PeakID (cmd=annotatePeaks.pl ./merged_peaks/idr_peaks_merged.txt mm10 -size 200 -norm 1e7 -d /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_aj_Male_Kupffer_ATAC_Chow_healthyoung_AJ1_TDT_l20210213_GTAGAGAG_CTATTAAG_S11_L001_trim30.aj.bowtie2_shifted_from_AJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_aj_Male_Kupffer_ATAC_Chow_healthyoung_AJ2_TDT_l20210213_CAGCCTCG_AAGGCTAT_S12_L001_trim30.aj.bowtie2_shifted_from_AJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_aj_Male_Kupffer_ATAC_Chow_healthyoung_AJ3_TDT_l20210213_TGCCTCTT_GAGCCTTA_S13_L001_trim30.aj.bowtie2_shifted_from_AJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_aj_Male_Kupffer_ATAC_Chow_healthyoung_AJ4_TDT_l20210213_TCCTCTAC_TTATGCGA_S14_L001_trim30.aj.bowtie2_shifted_from_AJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB1_TDT_l20210213_TCATGAGC_CTCTCTAT_S15_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB2_TDT_l20210213_CCTGAGAT_TATCCTCT_S16_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB3_TDT_l20210213_TAGCGAGT_GTAAGGAG_S17_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_balbcj_Male_Kupffer_ATAC_Chow_healthyoung_BALB4_TDT_l20210213_GTAGCTCC_ACTGCATA_S18_L001_trim30.balbcj.bowtie2_shifted_from_BALBCJ.sam /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C571_TDT_l20210213_TACTACGC_AAGGAGTA_S19_L001_trim30 /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C572_TDT_l20210213_AGGCTCCG_CTAAGCCT_S20_L001_trim30 /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C573_TDT_l20210213_GCAGCGTA_CGTCTAAT_S21_L001_trim30 /home/h1bennet/strains/data/ATAC/control_cohort2/tag_mouse_c57bl6j_Male_Kupffer_ATAC_Chow_healthyoung_C574_TDT_l20210213_CTGCGCAT_TCTCTCCG_S22_L001_trim30)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	atac_AJ_Kupffer_Control_rep1	atac_AJ_Kupffer_Control_rep2	atac_AJ_Kupffer_Control_rep3	atac_AJ_Kupffer_Control_rep4	atac_BALBcJ_Kupffer_Control_rep1	atac_BALBcJ_Kupffer_Control_rep2	atac_BALBcJ_Kupffer_Control_rep3	atac_BALBcJ_Kupffer_Control_rep4	atac_C57_Kupffer_Control_rep1	atac_C57_Kupffer_Control_rep2	atac_C57_Kupffer_Control_rep3	atac_C57_Kupffer_Control_rep4
Merged-chrX-36101513-3	chrX	36101415	36101615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10593.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	12.92	23.9	14.83	26.95	10.64	28.22	19.93	19.01	16.33	8.03	17.59	5.01
Merged-chr5-143622461-3	chr5	143622340	143622540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011182)	promoter-TSS (NM_011182)	-7.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	75.11	54.08	53.62	53.09	69.55	66.48	46.17	62.8	81.63	69.29	71.35	41.66
Merged-chr11-100814679-3	chr11	100814572	100814772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	7898.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	35.53	30.18	39.93	39.82	27.0	40.14	25.58	36.73	47.4	32.64	31.66	32.89
Merged-chr6-91712963-3	chr6	91712857	91713057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28890.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	182.52	163.74	188.82	159.67	214.37	258.07	148.15	223.12	223.83	226.95	290.94	150.05
Merged-chr17-70831832-3	chr17	70831791	70831991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	14886.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	37.55	43.26	39.93	45.45	56.05	44.53	56.14	59.19	49.17	64.77	86.43	52.0
Merged-chr10-13868970-3	chr10	13868905	13869105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-48.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	64.2	46.53	36.51	35.8	56.46	73.69	33.22	43.49	58.81	37.66	58.79	28.19
Merged-chr11-98907620-3	chr11	98907498	98907698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011799)	promoter-TSS (NM_011799)	-291.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	145.37	136.33	155.73	114.63	161.6	192.53	107.96	131.5	181.35	183.27	158.78	123.43
Merged-chr9-37488717-1	chr9	37488617	37488817	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-604.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	25.84	29.93	25.67	25.74	32.32	35.43	39.53	31.99	40.91	18.58	49.75	31.64
Merged-chr6-72938085-3	chr6	72937979	72938179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20153.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	58.15	55.59	67.88	25.74	29.05	46.1	23.25	32.02	64.91	42.18	50.75	31.33
Merged-chrX-74429029-3	chrX	74428964	74429164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010547)	promoter-TSS (NM_010547)	97.0	NM_008062	14381.0	Mm.27210	NM_008062	ENSMUSG00000031400	G6pdx	G28A|G6pd|Gpdx	glucose-6-phosphate dehydrogenase X-linked	protein-coding	20.19	37.23	30.8	22.12	31.09	35.43	28.23	27.0	26.55	41.17	33.16	20.68
Merged-chr6-42349121-3	chr6	42349028	42349228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	-700.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	29.88	34.96	22.82	31.77	38.46	33.24	31.56	36.76	67.07	52.22	73.86	31.64
Merged-chr6-84751623-3	chr6	84751522	84751722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 19 of 21)	Lx5|LINE|L1	-157714.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	32.3	19.87	56.48	50.27	35.18	57.38	54.48	56.69	46.22	52.22	57.28	30.7
Merged-chr10-117417499-3	chr10	117417399	117417599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29936.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	35.13	34.96	32.52	28.56	49.09	70.55	39.53	50.83	61.76	78.83	91.95	58.58
Merged-chr6-40325445-3	chr6	40325216	40325416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	-162.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	1.21	4.53	2.28	8.45	12.68	5.64	3.32	6.76	12.39	8.54	16.58	7.83
Merged-chr4-9682730-3	chr4	9682646	9682846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13402.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	49.26	57.85	59.33	64.35	66.68	90.94	81.05	116.27	99.52	112.97	129.14	72.36
Merged-chr10-68282640-3	chr10	68282558	68282758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3932.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	23.02	34.71	37.65	16.89	37.23	48.92	33.88	41.13	54.88	70.8	72.36	39.16
Merged-chr2-115581690-3	chr2	115581558	115581758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145898)	promoter-TSS (NM_001145898)	-58.0	NM_207264	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	21.0	22.89	20.54	27.75	42.14	28.22	24.25	52.29	54.88	51.72	87.93	32.58
Merged-chr10-8874187-3	chr10	8874081	8874281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	67.84	56.09	91.84	80.04	88.37	109.12	65.11	86.64	95.59	79.33	84.92	54.2
Merged-chr3-127487449-1	chr3	127487349	127487549	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	11666.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	30.09	18.58	33.16	27.88
Merged-chr1-88224254-3	chr1	88224154	88224354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2766.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	72.28	59.86	85.0	109.4	66.27	78.71	85.37	114.03	123.91	104.44	152.25	105.26
Merged-chr6-85333257-6	chr6	85333120	85333320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178639, intron 1 of 13)	CpG	202.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	39.17	62.88	63.89	68.78	47.05	57.38	52.82	49.35	61.56	79.83	80.9	63.28
Merged-chr14-70785524-3	chr14	70785433	70785633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11152.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	25.84	17.1	35.37	25.74	45.0	37.32	28.23	44.13	47.21	51.72	44.72	30.07
Merged-chr9-113741408-3	chr9	113741328	113741528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286599)	promoter-TSS (NM_001286599)	-45.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	32.71	36.72	15.97	36.2	46.64	31.36	22.59	34.74	66.09	63.27	77.88	49.5
Merged-chr11-94549156-3	chr11	94549056	94549256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	51.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	46.44	45.78	33.66	40.62	42.14	40.14	23.25	32.58	54.09	70.29	62.81	52.32
Merged-chr5-122219180-3	chr5	122219079	122219279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	8892.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	41.99	48.04	34.23	24.53	33.14	70.24	38.2	21.06	33.63	24.1	42.21	15.04
Merged-chr3-105898514-3	chr3	105898423	105898623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-5898.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	82.78	32.95	92.41	74.81	48.27	40.45	63.78	89.52	59.01	44.19	75.37	48.24
Merged-chr16-30599612-3	chr16	30599467	30599667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-156.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	106.6	96.08	141.47	111.41	107.19	128.88	109.28	92.64	134.14	143.6	151.75	71.42
Merged-chr7-64392235-3	chr7	64392097	64392297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	39.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	79.55	87.78	92.98	109.8	73.64	108.81	100.32	91.71	94.41	84.35	114.57	54.82
Merged-chr7-27591502-3	chr7	27591383	27591583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-69.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	103.37	90.05	56.48	76.02	77.32	115.71	67.43	64.43	142.6	159.17	117.58	70.48
Merged-chr2-152830656-3	chr2	152830570	152830770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	47.0	NM_001289716	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	104.58	73.19	75.3	61.54	72.82	112.89	58.79	93.34	95.39	81.84	120.6	55.45
Merged-chr5-19666663-3	chr5	19666562	19666762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-240856.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	21.8	35.97	21.11	60.73	54.41	49.54	42.52	107.69	120.77	79.33	133.16	80.82
Merged-chr2-126707271-3	chr2	126707173	126707373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252580)	promoter-TSS (NM_001252580)	-55.0	NM_001252580	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	138.91	127.52	129.49	121.46	119.46	186.26	101.31	120.65	153.02	155.65	191.45	108.39
Merged-chr6-113668910-3	chr6	113668828	113669028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28122.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	137.69	141.11	138.05	131.12	162.0	214.48	168.41	119.41	201.02	231.47	200.49	119.67
Merged-chr10-121583217-3	chr10	121583109	121583309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	3585.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	24.63	44.02	27.38	15.28	47.05	69.93	21.26	30.98	61.96	70.29	47.23	22.24
Merged-chr2-45050037-3	chr2	45049934	45050134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26857.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	52.9	59.36	91.27	83.26	54.0	54.56	37.87	63.42	65.5	68.79	68.84	41.66
Merged-chr1-153502006-5	chr1	153501885	153502085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14325.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	41.59	27.42	41.07	25.34	39.27	38.26	34.21	45.95	30.49	49.21	42.21	30.07
Merged-chr18-12237107-3	chr18	12237019	12237219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-733.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	18.17	13.83	23.96	14.88	29.05	29.79	18.27	25.01	45.04	38.66	35.68	25.06
Merged-chr6-4749343-3	chr6	4749244	4749444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	2038.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	71.88	67.41	58.19	49.07	69.55	83.72	42.52	64.79	88.71	80.34	106.53	59.21
Merged-chr7-30412866-3	chr7	30412749	30412949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	-939.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	86.82	81.5	134.06	109.0	139.1	130.76	124.23	121.4	133.94	105.44	167.83	87.09
Merged-chr6-87518806-3	chr6	87518727	87518927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	14432.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	46.03	35.72	39.93	47.86	43.36	60.21	38.53	60.5	43.66	38.16	35.68	16.6
Merged-chr8-3621397-3	chr8	3621287	3621487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026156)	promoter-TSS (NM_026156)	-91.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	191.8	181.85	181.98	164.5	243.83	269.36	122.9	201.51	285.2	258.08	234.66	144.42
Merged-chr4-127045664-3	chr4	127045568	127045768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15486.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	35.13	35.97	47.35	43.84	33.14	31.67	47.17	43.15	54.48	52.22	56.78	35.09
Merged-chr1-184618217-3	chr1	184618135	184618335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60544.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	86.82	80.74	86.14	95.72	98.18	104.73	82.71	91.74	92.44	73.81	85.92	51.69
Merged-chr18-68160009-3	chr18	68159918	68160118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	-67928.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	65.41	32.45	98.69	55.5	89.59	93.76	97.66	73.65	84.38	74.31	82.41	43.23
Merged-chr6-90597681-3	chr6	90597583	90597783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7197.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	65.01	39.49	73.59	83.26	68.73	63.97	86.36	84.2	91.07	71.3	97.98	67.35
Merged-chr7-99858988-3	chr7	99858864	99859064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025668)	promoter-TSS (NM_025668)	-81.0	NM_025668	66624.0	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	86.01	76.97	73.59	62.74	106.78	119.47	53.81	69.81	101.1	148.12	85.92	63.59
Merged-chr14-67715454-1	chr14	67715354	67715554	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285933)	promoter-TSS (NM_001285933)	156.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	34.32	37.73	23.96	35.8	45.0	36.06	26.57	25.21	35.8	43.18	49.75	30.07
Merged-chr5-72868468-3	chr5	72868377	72868577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113460)	promoter-TSS (NM_001113460)	-29.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	39.98	25.91	30.23	49.47	53.59	51.11	18.27	51.98	53.5	65.78	68.84	34.15
Merged-chr11-86614345-3	chr11	86614282	86614482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-30224.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	39.98	37.23	49.06	47.86	62.18	62.09	45.51	37.88	61.56	85.36	83.41	36.65
Merged-chr4-28944432-3	chr4	28944320	28944520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-123659.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	87.22	81.24	96.98	63.15	101.46	103.48	60.79	100.26	142.21	104.44	142.2	62.65
Merged-chr1-152796965-3	chr1	152796861	152797061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-3192.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	83.59	78.98	105.53	96.13	87.55	120.1	95.0	88.04	114.28	93.39	127.63	79.57
Merged-chrX-151929599-3	chrX	151929497	151929697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021523, intron 77 of 82)	intron (NM_021523, intron 77 of 82)	16383.0	NR_029753	723947.0		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	18.98	15.85	22.82	25.34	20.86	24.15	35.54	18.7	33.44	20.08	33.16	21.3
Merged-chr4-43045877-3	chr4	43045779	43045979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	341.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	77.53	62.13	74.73	69.18	86.32	76.2	60.79	79.74	92.64	73.31	93.96	52.63
Merged-chr2-121271488-3	chr2	121271390	121271590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290830)	promoter-TSS (NM_001290830)	-83.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	65.01	68.42	70.17	90.09	101.05	99.72	57.47	105.7	125.68	107.45	150.74	72.99
Merged-chr9-66350420-3	chr9	66350321	66350521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-29.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	33.11	20.12	25.1	17.29	24.96	21.32	5.98	12.39	39.14	36.15	37.69	25.69
Merged-chr13-41016263-3	chr13	41016143	41016343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-7.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	75.11	59.36	67.31	59.93	80.18	91.88	64.77	92.69	116.24	88.37	160.29	77.69
Merged-chr4-141419550-3	chr4	141419456	141419656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1223.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	38.76	34.46	23.39	29.76	40.5	37.63	28.57	32.55	33.83	53.22	55.27	28.51
Merged-chr6-72753039-3	chr6	72752945	72753145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	36000.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	43.61	36.72	43.35	47.86	43.77	40.45	43.85	70.85	43.47	40.67	72.86	39.16
Merged-chr17-46328034-3	chr17	46327925	46328125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-2.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	77.93	77.22	77.58	74.81	92.87	71.81	62.78	79.6	90.28	98.91	112.05	66.1
Merged-chr1-151041174-3	chr1	151041075	151041275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47740.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	54.92	44.27	90.7	67.97	69.55	62.09	62.78	84.03	55.07	61.76	109.04	35.09
Merged-chr7-81855123-3	chr7	81855046	81855246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3855.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	138.1	91.56	157.45	121.87	154.64	128.25	141.17	156.34	129.03	150.63	186.42	83.64
Merged-chr11-120035002-3	chr11	120034946	120035146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	6735.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	18.57	26.91	23.96	26.14	42.14	33.55	23.92	25.43	24.59	27.62	18.59	16.92
Merged-chr6-123171246-3	chr6	123171153	123171353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-1770.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	27.46	29.18	30.8	47.86	22.09	32.61	22.59	24.56	36.58	20.59	42.21	22.56
Merged-chr8-128685968-6	chr8	128685889	128686089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010578, intron 1 of 15)	CpG	335.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	28.27	28.17	21.68	30.57	22.5	26.97	38.53	21.64	42.68	32.64	48.24	26.94
Merged-chr10-84335651-3	chr10	84335566	84335766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104805.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	22.61	19.37	39.93	30.57	59.73	72.12	59.79	63.48	41.3	49.71	52.26	12.84
Merged-chr15-79028445-3	chr15	79028341	79028541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008197, exon 1 of 1)	5' UTR (NM_008197, exon 1 of 1)	229.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	29.48	25.91	20.54	20.51	20.86	22.89	12.95	20.36	34.22	29.62	38.69	21.93
Merged-chr5-117357653-3	chr5	117357556	117357756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 1 of 8)	CpG	351.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	13.33	19.37	25.1	32.58	15.96	18.5	26.57	24.87	30.88	28.62	25.12	26.63
Merged-chr13-41600169-3	chr13	41600051	41600251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6065.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	54.51	40.24	54.76	60.33	51.55	71.49	19.6	46.88	65.1	51.72	75.37	28.19
Merged-chr7-142390353-3	chr7	142390255	142390455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-2485.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	84.8	64.89	78.72	56.71	106.37	123.55	89.02	90.28	85.95	77.32	72.36	49.81
Merged-chr18-35772115-3	chr18	35772021	35772221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019912, intron 1 of 6)	CpG	562.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	18.57	29.93	16.54	14.88	33.96	26.97	14.95	20.5	55.47	43.18	57.28	30.7
Merged-chr5-146797282-1	chr5	146797182	146797382	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2326.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.5	0.57	0.0	0.0	0.63	0.0	0.0	19.67	16.57	23.62	4.39
Merged-chr14-105300758-2	chr14	105300657	105300857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 5 of 7)	intron (NM_029561, intron 5 of 7)	42084.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	60.57	79.99	112.38	85.27	82.23	95.33	92.68	125.72	0.59	0.0	1.51	0.0
Merged-chr5-31193174-3	chr5	31193071	31193271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	-32.0	NM_010122	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	166.36	125.76	159.16	129.91	172.23	175.29	110.28	148.46	169.35	167.2	200.49	119.04
Merged-chr7-6285546-3	chr7	6285444	6285644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1036.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	71.07	53.32	74.16	54.3	69.14	82.16	63.44	101.94	124.9	92.89	126.63	65.16
Merged-chr5-43865483-3	chr5	43865390	43865590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3319.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	46.44	28.42	53.05	41.43	86.73	72.75	72.08	80.22	69.23	48.2	73.86	40.1
Merged-chr12-71114073-3	chr12	71113982	71114182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029227, intron 2 of 4)	intron (NM_029227, intron 2 of 4)	2654.0	NM_029227	75266.0	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20-like	protein-coding	20.19	32.95	26.81	21.32	36.41	35.12	18.93	44.22	42.09	29.12	38.69	22.56
Merged-chr3-8747342-3	chr3	8747257	8747457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-80319.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	40.78	26.16	41.64	39.82	58.91	62.09	55.47	65.44	47.4	52.22	76.88	42.92
Merged-chr17-35394068-1	chr17	35393968	35394168	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_051981)	promoter-TSS (NR_051981)	-31.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.4	0.0	0.0	0.0	0.41	0.31	0.0	0.0	46.22	43.18	29.65	18.48
Merged-chr10-37138925-3	chr10	37138805	37139005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	21.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	71.88	71.94	52.48	47.86	86.73	92.82	50.82	80.89	102.28	83.35	116.07	40.72
Merged-chr5-130079403-3	chr5	130079279	130079479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	9.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	62.99	62.38	55.33	51.08	70.37	79.02	42.85	65.05	88.31	74.81	117.58	44.48
Merged-chr15-36902018-3	chr15	36901921	36902121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105092.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	30.69	13.33	28.52	30.97	30.27	24.15	17.27	36.31	34.62	21.09	55.78	28.51
Merged-chr11-52098654-3	chr11	52098572	52098772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019411)	promoter-TSS (NM_019411)	-152.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	180.09	183.87	176.27	185.41	189.82	233.3	169.74	154.49	267.3	244.53	311.04	166.97
Merged-chr8-40304620-3	chr8	40304519	40304719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3310.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	21.0	16.6	19.97	28.15	39.27	34.18	34.55	39.84	45.63	38.66	41.2	39.16
Merged-chr16-24136720-3	chr16	24136626	24136826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54036.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	30.69	24.4	31.95	28.56	27.82	32.61	14.95	26.92	33.24	58.24	38.19	23.49
Merged-chr11-76479893-3	chr11	76479788	76479988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	MER117|DNA|hAT-Charlie	-11423.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	75.51	70.68	92.41	81.24	82.23	94.07	67.76	75.95	82.41	99.92	84.42	59.21
Merged-chr6-108719028-3	chr6	108718935	108719135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58101.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	69.05	84.01	106.1	93.31	63.41	85.92	55.8	88.12	93.03	86.86	117.08	66.73
Merged-chr1-186677816-3	chr1	186677721	186677921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009367, intron 1 of 6)	B4A|SINE|B4	28168.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	16.15	17.36	19.97	24.94	20.05	15.99	24.91	29.36	18.88	18.58	29.65	20.99
Merged-chr11-115631668-2	chr11	115631567	115631767	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3372.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	10.5	15.85	6.28	6.44	14.73	26.65	17.94	10.37	29.5	15.06	17.59	11.28
Merged-chrX-73228155-3	chrX	73228053	73228253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007978)	promoter-TSS (NM_007978)	-153.0	NM_007978	14070.0	Mm.165807	NM_007978	ENSMUSG00000078317	F8a	AI852759|DXUcsf1|F8a1	factor 8-associated gene A	protein-coding	31.5	35.72	67.31	62.74	59.73	74.63	47.83	65.02	55.27	54.73	73.36	44.17
Merged-chr8-40598094-3	chr8	40597994	40598194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 3 of 13)	MER33|DNA|hAT-Charlie	36698.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	31.5	58.1	74.73	37.4	39.68	46.1	28.23	58.4	55.27	50.21	72.86	34.46
Merged-chr15-25321797-3	chr15	25321679	25321879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91985.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	51.69	50.56	58.76	69.98	56.87	53.62	46.84	78.87	67.07	44.19	74.87	34.15
Merged-chr6-57796069-3	chr6	57795958	57796158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	29067.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	61.78	66.91	78.15	51.48	67.09	87.8	61.12	58.43	90.87	73.31	66.83	30.39
Merged-chr18-34624153-3	chr18	34624049	34624249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-475.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	16.56	13.83	18.25	19.31	22.91	16.93	12.95	13.82	25.18	17.07	39.19	21.93
Merged-chr6-136518734-3	chr6	136518639	136518839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019426)	promoter-TSS (NM_019426)	-112.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	145.77	128.28	99.26	108.59	128.87	149.57	93.01	126.28	165.81	157.66	169.34	87.4
Merged-chr18-46742482-2	chr18	46742364	46742564	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026217)	promoter-TSS (NM_026217)	588.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	12.52	20.12	7.99	20.11	12.68	17.56	21.59	17.61	12.78	19.08	18.59	10.65
Merged-chr1-91398770-3	chr1	91398626	91398826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355152)	promoter-TSS (NM_001355152)	97.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	48.86	60.62	51.91	54.3	65.87	55.82	54.48	54.84	60.38	65.27	71.35	37.28
Merged-chr8-11452782-3	chr8	11452674	11452874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25155.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	132.04	116.46	149.46	96.53	144.41	200.06	137.52	163.01	161.48	144.61	161.3	92.73
Merged-chr11-87448909-3	chr11	87448820	87449020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	21329.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	47.24	74.7	55.9	69.98	46.23	92.19	54.81	46.32	41.11	39.16	48.74	37.59
Merged-chr1-173742466-3	chr1	173742347	173742547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-638.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	58.55	41.75	66.74	62.34	100.64	75.26	46.17	109.37	85.95	76.32	118.59	46.68
Merged-chr14-45664452-3	chr14	45664331	45664531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-6288.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	27.46	26.91	27.95	29.36	30.27	35.75	35.21	30.76	86.54	68.29	69.85	28.82
Merged-chr2-59338637-3	chr2	59338514	59338714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48068.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	118.31	91.81	153.45	131.52	126.82	123.55	127.89	176.33	143.19	142.1	194.96	119.35
Merged-chr2-69664210-3	chr2	69664112	69664312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028284, intron 9 of 11)	RSINE1|SINE|B4	-5908.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	23.02	17.86	82.72	44.24	30.27	26.03	58.79	65.47	52.12	40.17	82.41	43.23
Merged-chr11-75564370-3	chr11	75564260	75564460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12931.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	21.8	30.69	21.68	16.09	42.14	36.69	23.58	15.67	32.65	24.6	40.2	12.22
Merged-chr18-64618942-3	chr18	64618881	64619081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	42019.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	45.23	41.0	41.64	62.34	41.32	67.42	55.47	46.82	23.6	26.61	21.1	18.8
Merged-chr18-67396711-3	chr18	67396607	67396807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	5976.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	119.52	114.95	103.82	102.56	155.05	134.84	93.67	124.07	69.63	93.39	81.9	52.0
Merged-chr8-83141027-3	chr8	83140911	83141111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24341.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	39.17	28.17	59.9	41.02	43.36	28.54	22.59	45.67	29.31	24.1	29.65	20.68
Merged-chr3-41565608-3	chr3	41565512	41565712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	CpG	732.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	54.92	34.21	43.35	69.58	47.87	58.32	41.85	79.57	42.29	41.17	74.37	32.58
Merged-chr3-142561713-3	chr3	142561625	142561825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289492, intron 2 of 11)	intron (NM_001289492, intron 2 of 11)	1369.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	20.59	34.21	19.4	17.7	33.96	62.4	30.89	34.23	28.13	19.58	25.63	17.54
Merged-chr13-97187895-3	chr13	97187808	97188008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010422, intron 5 of 13)	intron (NM_010422, intron 5 of 13)	10449.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	178.07	199.21	218.48	260.22	174.28	195.98	208.27	197.52	164.23	179.75	214.06	112.15
Merged-chr10-7064293-3	chr10	7064213	7064413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41128.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	61.78	46.53	112.38	90.49	74.87	82.47	78.39	125.64	74.15	54.23	108.03	77.69
Merged-chr13-59585209-3	chr13	59585124	59585324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	-1.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	170.81	168.52	151.74	140.37	162.0	213.54	132.54	125.44	240.16	211.89	238.18	118.41
Merged-chr14-105082317-1	chr14	105082217	105082417	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32359.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	2.02	3.02	5.7	8.85	0.82	0.63	9.3	12.42	2.75	0.5	4.02	1.25
Merged-chr5-113830458-3	chr5	113830365	113830565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009151)	promoter-TSS (NM_009151)	36.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	22.21	25.91	17.68	13.67	32.32	42.02	12.62	23.92	37.17	34.65	29.65	28.51
Merged-chr11-100822588-3	chr11	100822486	100822686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011489)	promoter-TSS (NM_011489)	-16.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	31.5	22.64	25.67	30.57	39.27	50.49	36.21	35.33	43.27	38.66	32.66	25.69
Merged-chr14-66235718-3	chr14	66235600	66235800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-21876.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	52.49	44.77	88.99	55.1	67.09	43.59	48.83	65.72	60.58	63.27	67.33	44.17
Merged-chr13-111508789-3	chr13	111508691	111508891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18664.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	29.07	53.32	58.19	42.23	57.68	47.98	27.9	22.49	59.2	60.25	49.24	45.74
Merged-chr3-83841695-3	chr3	83841592	83841792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011905)	promoter-TSS (NM_011905)	-84.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	140.52	129.29	125.5	79.23	156.69	157.41	101.64	102.25	166.4	192.31	169.34	78.0
Merged-chr7-49759163-3	chr7	49759095	49759295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146052)	promoter-TSS (NM_001146052)	89.0	NM_001146049	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	18.57	27.42	23.39	24.94	32.73	23.2	29.23	38.61	25.77	16.57	39.7	15.35
Merged-chr17-29360895-3	chr17	29360806	29361006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013710)	promoter-TSS (NM_013710)	-8.0	NM_013710	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	55.32	48.04	65.03	65.16	57.68	74.32	33.55	51.06	67.27	57.74	64.32	27.25
Merged-chr12-17690538-3	chr12	17690459	17690659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361645)	promoter-TSS (NM_001361645)	-250.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	81.16	95.33	61.61	124.68	97.37	126.68	120.25	84.62	80.25	103.94	121.1	68.61
Merged-chr2-128715652-1	chr2	128715552	128715752	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	16737.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.63	1.51	1.71	4.02	5.32	1.88	10.63	12.06	2.75	4.52	4.02	5.01
Merged-chr1-16228765-3	chr1	16228657	16228857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025303)	TTS (NM_025303)	122875.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	54.51	41.0	61.61	51.48	80.18	67.1	65.77	81.98	97.16	80.34	105.02	46.68
Merged-chr7-46834057-3	chr7	46833950	46834150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11754.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	41.59	42.76	49.06	32.98	56.46	68.36	58.13	90.28	73.17	68.79	87.93	51.06
Merged-chr19-11119478-3	chr19	11119393	11119593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	11385.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	60.97	49.55	62.18	61.94	85.91	61.46	40.19	66.42	31.67	25.61	46.23	34.77
Merged-chr7-104446148-3	chr7	104446051	104446251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-26.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	76.32	67.41	71.88	83.66	90.41	87.17	48.83	82.6	97.16	94.4	109.54	59.52
Merged-chr17-5802262-3	chr17	5802184	5802384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045079, intron 2 of 2)	MER34A1|LTR|ERV1	2794.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	32.71	19.62	36.51	32.18	30.68	25.09	30.56	59.94	31.27	31.13	29.65	23.81
Merged-chr18-44381102-3	chr18	44380986	44381186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	CpG	586.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	15.75	19.87	19.97	17.7	14.73	15.99	11.29	18.5	23.8	23.1	28.14	19.11
Merged-chr12-17773876-3	chr12	17773779	17773979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	83070.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	29.48	44.27	45.64	32.98	80.59	86.55	68.1	49.96	91.07	106.45	98.99	45.74
Merged-chr3-108210544-3	chr3	108210444	108210644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-17.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	64.61	65.4	64.46	64.75	85.09	111.95	84.04	71.33	110.15	124.02	125.12	57.01
Merged-chr15-91191452-3	chr15	91191358	91191558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	549.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	31.5	18.61	17.11	30.97	22.09	22.26	11.96	19.74	21.64	22.59	29.14	14.41
Merged-chr11-3170984-1	chr11	3170884	3171084	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	RSINE1|SINE|B4	22479.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	25.44	24.65	16.54	21.32	22.09	19.44	32.22	20.16	0.39	0.0	0.0	1.25
Merged-chr17-33781289-3	chr17	33781199	33781399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020581, exon 1 of 7)	exon (NM_020581, exon 1 of 7)	276.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	52.9	37.48	54.19	30.16	51.14	47.04	34.55	40.6	31.08	45.19	37.69	26.94
Merged-chr4-136180603-1	chr4	136180503	136180703	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-179.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.42	0.0	2.85	0.0	18.82	27.59	11.96	16.07	1.77	2.51	0.5	4.07
Merged-chr1-106511838-3	chr1	106511755	106511955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34776.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	77.12	69.92	131.78	126.29	92.87	111.63	86.03	170.97	110.54	82.85	172.35	72.36
Merged-chr5-134232789-3	chr5	134232675	134232875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3150.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	79.55	57.35	49.06	38.21	87.14	113.51	62.45	59.78	111.13	116.49	97.98	54.82
Merged-chr7-16285595-3	chr7	16285502	16285702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172297)	promoter-TSS (NM_172297)	-943.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	35.53	28.42	30.8	20.91	31.5	33.87	21.26	27.7	27.14	25.11	32.16	15.98
Merged-chr16-22358991-3	chr16	22358900	22359100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64012.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	56.13	51.06	75.3	67.97	57.27	55.19	47.5	64.43	93.43	64.27	83.91	61.09
Merged-chr7-127511997-3	chr7	127511900	127512100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	17.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	82.78	63.89	73.59	57.92	92.05	106.93	39.53	70.93	108.97	135.07	138.18	66.1
Merged-chr6-97379546-1	chr6	97379446	97379646	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	79740.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.02	1.51	4.56	8.45	4.91	9.09	1.99	11.41	1.97	1.0	6.53	6.27
Merged-chr11-94761058-3	chr11	94760954	94761154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001105561, exon 1 of 5)	5' UTR (NM_001105561, exon 1 of 5)	128.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	41.19	41.75	42.78	36.6	47.46	38.57	25.58	28.4	49.17	31.13	46.73	28.82
Merged-chr3-88716880-3	chr3	88716780	88716980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009069)	promoter-TSS (NM_009069)	26.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	30.69	20.37	23.39	28.15	41.32	25.09	16.94	23.44	31.67	26.11	41.2	24.12
Merged-chr9-67845248-3	chr9	67845135	67845335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	4839.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	108.22	85.52	88.99	76.02	72.0	97.52	74.07	75.5	66.28	41.67	58.29	56.07
Merged-chr1-55405833-3	chr1	55405750	55405950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-96.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	123.97	125.76	173.42	179.78	136.23	123.55	124.9	154.91	133.16	136.07	190.44	91.47
Merged-chr8-94386392-3	chr8	94386296	94386496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022331)	promoter-TSS (NM_022331)	-33.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	127.2	192.17	129.49	129.11	152.6	222.32	121.24	122.33	200.82	185.28	251.24	110.58
Merged-chr15-8663923-3	chr15	8663827	8664027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	L3|LINE|CR1	46880.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	17.36	21.63	23.39	27.35	25.77	15.05	12.95	21.11	35.4	22.09	25.63	15.66
Merged-chr13-54621761-3	chr13	54621668	54621868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-16.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	58.15	52.82	45.64	49.87	40.91	77.14	35.87	55.57	67.86	72.81	80.4	40.72
Merged-chr8-117258094-3	chr8	117257983	117258183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	(T)n|Simple_repeat|Simple_repeat	1064.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	80.36	90.8	108.96	97.33	100.64	111.0	96.0	98.75	117.03	108.96	97.98	65.47
Merged-chr5-139380563-3	chr5	139380467	139380667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	-72.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	141.33	94.32	106.1	109.8	126.41	137.03	86.7	122.19	112.51	100.42	127.63	74.87
Merged-chr1-36264373-3	chr1	36264296	36264496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153408)	TTS (NM_153408)	9029.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	80.36	54.83	81.0	59.93	47.46	50.8	40.52	55.88	63.92	68.29	43.72	31.33
Merged-chr12-111164637-3	chr12	111164539	111164739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1731.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	49.26	52.82	53.62	37.4	63.41	71.18	16.61	39.45	64.32	78.33	81.4	33.83
Merged-chr4-124709999-3	chr4	124709904	124710104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4857.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	41.59	43.01	25.67	22.52	38.05	72.44	30.23	27.36	68.84	55.23	31.66	31.95
Merged-chr4-62322865-3	chr4	62322759	62322959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 17 of 27)	ORR1E|LTR|ERVL-MaLR	31312.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	58.95	29.18	45.07	46.66	37.64	44.53	23.25	46.57	41.89	43.18	73.36	21.62
Merged-chr10-62947032-3	chr10	62946925	62947125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152862)	promoter-TSS (NR_152862)	-4.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	17.77	15.85	25.67	22.52	22.91	24.46	15.61	31.65	30.29	30.63	36.18	15.35
Merged-chr10-118868596-3	chr10	118868499	118868699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 1 of 2)	CpG-1533	304.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	39.17	30.94	33.09	32.18	31.5	45.47	25.91	21.59	55.07	88.87	57.28	19.11
Merged-chr8-47680512-3	chr8	47680405	47680605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5346.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	36.75	22.64	31.95	36.2	45.0	46.72	16.61	44.36	51.53	28.12	48.74	31.33
Merged-chr14-67859688-3	chr14	67859575	67859775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	70.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	40.38	31.94	62.75	48.67	47.05	46.1	53.48	64.77	40.32	41.17	58.29	28.19
Merged-chr10-82629803-3	chr10	82629722	82629922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-16.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	161.52	149.66	179.69	115.83	141.55	156.47	88.69	93.28	204.95	225.95	266.82	119.98
Merged-chr6-83652864-1	chr6	83652764	83652964	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016751, exon 4 of 7)	exon (NM_016751, exon 4 of 7)	3252.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.06	2.26	10.27	2.41	5.73	3.45	8.64	13.51	7.67	4.52	7.03	11.28
Merged-chr10-7835234-3	chr10	7835131	7835331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1150.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	16.56	22.39	35.37	33.38	24.14	23.83	20.93	42.14	28.32	18.58	25.12	26.63
Merged-chr1-45795500-3	chr1	45795409	45795609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028599, exon 1 of 21)	5' UTR (NM_028599, exon 1 of 21)	343.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	55.32	60.87	86.71	51.88	76.5	73.06	51.49	81.06	79.46	93.39	100.5	58.27
Merged-chr2-120632197-3	chr2	120632098	120632298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22603.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	78.34	75.71	68.45	100.95	94.91	100.66	92.01	99.73	91.07	83.35	114.57	53.88
Merged-chr1-173420528-3	chr1	173420431	173420631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-73.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	83.59	65.4	53.62	55.91	81.41	103.17	37.2	59.36	86.74	78.83	95.47	29.45
Merged-chr2-26933522-3	chr2	26933452	26933652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	-41.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	104.58	112.43	124.93	73.2	133.37	167.45	92.01	107.92	167.77	161.18	153.26	101.81
Merged-chr13-92241602-3	chr13	92241517	92241717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010829, intron 19 of 23)	intron (NM_010829, intron 19 of 23)	-113166.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	22.61	23.39	14.26	28.96	72.0	60.83	56.8	64.6	42.88	51.21	51.76	36.03
Merged-chr17-6006321-3	chr17	6006231	6006431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357667, intron 6 of 24)	intron (NM_001357667, intron 6 of 24)	-1249.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	79.55	65.15	100.4	85.67	80.59	74.94	47.17	89.58	83.4	76.32	85.42	63.91
Merged-chr12-86046309-3	chr12	86046204	86046404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	L1MB3|LINE|L1	32737.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	73.89	50.81	106.1	77.22	107.59	83.72	97.33	138.28	102.28	82.35	155.27	76.75
Merged-chr19-45783672-3	chr19	45783586	45783786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-133.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	180.09	154.69	131.21	141.17	158.73	230.79	110.28	146.5	196.1	230.47	235.16	123.43
Merged-chr17-22867239-3	chr17	22867147	22867347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110254)	promoter-TSS (NM_001110254)	-113.0	NM_001110254	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	18.98	33.45	9.13	26.95	24.96	22.89	20.26	24.5	18.69	17.07	27.13	19.42
Merged-chr11-49076508-3	chr11	49076411	49076611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-76.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	43.21	45.78	69.03	47.86	31.5	67.73	43.18	56.41	60.38	63.77	59.8	41.66
Merged-chr5-27791624-3	chr5	27791508	27791708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-58.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	83.18	109.16	110.1	96.13	103.5	95.95	140.51	90.03	101.49	113.98	105.02	65.47
Merged-chr11-46817910-3	chr11	46817817	46818017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 3 of 8)	intron (NM_178759, intron 3 of 8)	7118.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	40.38	27.17	48.49	45.05	51.14	54.88	67.76	77.97	74.54	48.2	52.26	24.43
Merged-chr9-55938169-3	chr9	55938069	55938269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-50.0	NM_001081341	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	57.34	47.29	51.91	67.57	52.37	51.43	43.18	47.61	63.73	73.31	76.38	55.76
Merged-chr6-129495084-3	chr6	129494951	129495151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12114.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	52.49	56.59	50.2	42.63	64.23	79.96	44.18	62.27	61.56	45.69	52.76	22.24
Merged-chr14-31930624-3	chr14	31930545	31930745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-98458.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	43.21	36.97	62.75	64.75	43.77	28.85	30.56	55.15	57.43	45.69	74.37	57.01
Merged-chrM-13524-1	chrM	13424	13624	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											46447.4	44435.43	50954.9	55086.08	39443.31	48174.82	51249.99	55878.84	0.0	0.0	0.0	0.0
Merged-chr1-183299338-3	chr1	183299234	183299434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2041.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	79.55	91.3	81.58	69.58	85.91	70.55	137.85	66.67	46.42	59.75	59.8	122.8
Merged-chr5-150600986-3	chr5	150600895	150601095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6470.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	35.53	30.18	57.05	41.83	37.64	23.52	33.55	49.35	41.5	34.14	42.71	32.89
Merged-chr8-119575190-3	chr8	119575106	119575306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	-6.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	64.61	55.34	41.64	37.0	52.37	75.57	43.85	52.54	76.31	86.36	70.35	45.42
Merged-chr11-74829980-3	chr11	74829839	74830039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-985.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	60.97	73.95	69.6	55.91	74.05	86.55	56.8	82.09	92.44	69.29	108.54	59.52
Merged-chr7-140857357-3	chr7	140857263	140857463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-34.0	NM_053194	101489.0	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	67.43	39.49	44.5	46.66	43.36	52.68	34.21	54.22	61.17	57.24	77.88	36.34
Merged-chr1-172482414-1	chr1	172482314	172482514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_033608)	promoter-TSS (NM_033608)	97.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	33.92	17.36	25.1	6.44	18.82	23.83	6.98	6.53	18.88	16.57	14.07	9.4
Merged-chr4-135272929-3	chr4	135272825	135273025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-165.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	268.12	292.53	276.67	277.92	303.96	348.69	244.48	238.23	338.11	371.06	399.98	182.01
Merged-chr2-27427101-3	chr2	27426977	27427177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	531.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	72.68	57.1	74.16	48.26	83.05	78.39	47.5	75.25	112.9	78.83	106.53	54.51
Merged-chr4-108619966-3	chr4	108619861	108620061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	5.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	59.76	54.58	59.9	49.47	61.37	66.79	44.51	66.31	80.64	82.85	106.53	57.33
Merged-chr16-18343956-3	chr16	18343813	18344013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138583)	promoter-TSS (NM_138583)	-3.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	104.18	78.98	107.25	141.17	107.19	98.15	83.04	123.34	82.81	101.93	154.26	63.59
Merged-chr10-40093694-3	chr10	40093602	40093802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	48552.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	54.51	42.26	44.5	42.63	64.64	89.37	43.51	64.71	72.97	105.94	68.34	51.38
Merged-chr13-47105215-3	chr13	47105118	47105318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	1003.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	54.51	54.83	61.61	39.01	53.18	87.49	35.21	37.15	78.09	66.78	52.26	31.64
Merged-chr2-122148731-3	chr2	122148636	122148836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	1049.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	26.25	37.23	52.48	41.83	45.82	44.84	36.54	35.8	68.64	63.27	90.95	34.15
Merged-chr2-37443246-3	chr2	37443086	37443286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146121)	promoter-TSS (NM_146121)	-65.0	NM_199025	320633.0	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	96.51	82.75	91.27	78.03	96.55	104.11	59.79	87.73	123.91	107.95	131.65	57.33
Merged-chr8-126884353-2	chr8	126884260	126884460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35340.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	4.44	4.02	11.98	5.23	16.77	19.13	22.59	17.07	35.01	24.1	14.07	19.42
Merged-chr13-34709155-3	chr13	34709052	34709252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30490.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	40.38	23.14	37.08	33.78	67.91	73.06	49.49	47.5	45.83	47.2	67.84	23.81
Merged-chr10-41573358-3	chr10	41573255	41573455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	5339.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	109.43	101.37	97.55	125.89	96.55	84.66	77.4	93.25	78.87	75.82	119.59	58.89
Merged-chr2-167351622-3	chr2	167351539	167351739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2461.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	19.38	18.86	23.96	21.32	30.68	40.76	24.91	38.47	53.3	45.69	48.74	21.3
Merged-chr2-126477782-3	chr2	126477682	126477882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13771.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	64.61	40.5	89.56	82.45	88.78	125.43	100.32	99.11	88.71	55.23	74.87	68.61
Merged-chr2-24975146-3	chr2	24975046	24975246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-48.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	217.65	247.76	268.11	298.43	269.6	312.95	238.5	266.55	299.16	287.71	409.52	176.06
Merged-chr6-90463650-3	chr6	90463557	90463757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355668, intron 1 of 2)	CpG	1081.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	31.09	27.92	18.25	26.55	14.73	22.58	13.62	32.33	17.7	21.59	28.64	12.53
Merged-chr8-94917611-3	chr8	94917518	94917718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033533, intron 1 of 8)	CpG	480.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	82.37	70.93	75.87	50.68	92.05	74.94	66.77	96.65	94.41	93.39	143.71	72.99
Merged-chr15-4816987-3	chr15	4816877	4817077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81760.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	25.44	20.63	19.97	35.8	33.55	16.62	35.21	38.3	30.09	27.62	30.65	13.78
Merged-chr2-49424977-3	chr2	49424859	49425059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26527.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	35.94	41.25	58.19	67.57	29.46	48.92	38.2	67.35	58.22	51.21	56.28	33.83
Merged-chr11-117849191-3	chr11	117849106	117849306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-31.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	83.59	76.72	77.58	59.12	95.32	122.92	51.49	61.26	89.3	81.34	87.93	46.36
Merged-chr14-54554443-3	chr14	54554328	54554528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145462)	promoter-TSS (NM_145462)	-67.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	41.19	34.21	33.09	38.61	36.0	42.02	21.26	43.54	77.1	50.21	89.94	57.95
Merged-chr4-133673235-3	chr4	133673145	133673345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	-79.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	55.72	65.9	37.65	37.0	43.77	71.49	25.24	32.16	70.81	69.79	24.12	22.56
Merged-chr12-108178825-1	chr12	108178725	108178925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009832)	promoter-TSS (NM_009832)	459.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	19.38	13.58	20.54	8.45	20.86	10.03	14.62	15.39	19.28	13.56	21.61	25.06
Merged-chr13-55016686-3	chr13	55016591	55016791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4128.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	36.34	60.87	41.07	30.57	24.14	42.33	20.26	23.89	41.11	40.67	20.6	31.01
Merged-chr5-99251526-3	chr5	99251422	99251622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	95.7	102.87	87.85	98.54	111.28	141.11	99.98	118.29	109.56	122.01	156.27	78.94
Merged-chr13-89383885-3	chr13	89383766	89383966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-156770.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	84.39	103.38	95.84	95.72	45.0	44.53	29.23	22.07	221.08	186.28	270.34	139.09
Merged-chr4-98202442-3	chr4	98202331	98202531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	180834.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	16.96	21.13	34.23	29.76	25.36	30.73	27.24	35.78	38.94	37.16	56.28	23.18
Merged-chr14-122107551-1	chr14	122107451	122107651	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	469.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	15.75	20.88	17.68	22.93	22.5	24.77	18.93	19.15	19.87	12.05	23.11	20.36
Merged-chr11-113853634-1	chr11	113853534	113853734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172800, intron 16 of 44)	intron (NM_172800, intron 16 of 44)	-101819.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	15.75	24.4	22.25	26.95	0.0	0.0	0.0	0.06	0.39	0.0	0.0	0.0
Merged-chr10-127597498-3	chr10	127597406	127597606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23642.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	22.61	19.37	34.23	18.5	49.91	31.98	27.9	34.32	40.52	38.66	44.22	19.11
Merged-chr4-133118296-3	chr4	133118201	133118401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12332.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	18.17	27.42	27.95	24.53	35.18	50.17	24.25	27.9	61.96	58.75	67.33	24.12
Merged-chr3-100176224-3	chr3	100176124	100176324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104341, intron 3 of 13)	intron (NR_104341, intron 3 of 13)	13761.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	38.36	30.94	40.5	41.02	42.96	39.82	38.2	50.19	39.53	36.15	50.25	31.33
Merged-chr3-95230482-3	chr3	95230377	95230577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1534.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	30.28	35.47	37.65	26.55	35.18	43.59	21.26	32.02	44.45	41.17	42.71	27.57
Merged-chr12-69680954-3	chr12	69680867	69681067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135559, intron 1 of 22)	intron (NM_001135559, intron 1 of 22)	885.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	22.61	19.37	6.28	7.24	15.55	29.16	17.27	24.98	24.59	23.6	11.05	14.72
Merged-chr1-182983145-3	chr1	182983053	182983253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28365.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	31.5	23.14	33.66	29.76	38.05	32.93	38.86	40.71	25.77	36.15	31.15	21.62
Merged-chr3-27218805-3	chr3	27218694	27218894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	35790.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	49.67	42.76	92.41	77.22	81.41	95.33	64.44	115.4	78.28	71.3	94.47	52.94
Merged-chr17-57347125-3	chr17	57347005	57347205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11581.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	120.73	103.63	140.9	104.57	107.59	142.05	103.31	109.12	126.47	130.55	172.85	87.09
Merged-chr5-115490043-3	chr5	115490045	115490245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5661.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	52.49	43.51	64.46	50.27	42.14	78.71	48.83	33.84	53.3	58.75	40.2	42.92
Merged-chr7-92698854-3	chr7	92698755	92698955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28943.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	48.05	44.02	27.95	19.31	36.0	121.67	49.16	41.83	135.32	141.59	116.58	55.76
Merged-chr2-164858311-3	chr2	164858217	164858417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011125)	promoter-TSS (NM_011125)	-609.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	18.57	13.83	62.18	38.61	31.91	26.03	20.93	45.73	29.31	21.09	30.15	22.87
Merged-chr5-115349065-3	chr5	115348959	115349159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007748)	promoter-TSS (NM_007748)	-104.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	82.37	46.53	69.6	62.74	68.73	87.17	37.2	48.0	104.64	87.87	92.96	60.77
Merged-chr1-74284309-1	chr1	74284209	74284409	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	429.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	10.09	9.56	10.27	10.46	9.82	12.23	19.27	10.23	25.57	21.59	21.61	13.16
Merged-chr9-99382710-3	chr9	99382602	99382802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24172.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	56.94	42.76	51.91	71.99	22.5	25.71	36.21	50.75	27.14	15.57	35.17	19.74
Merged-chr15-99295129-3	chr15	99295041	99295241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018786)	promoter-TSS (NM_018786)	-100.0	NM_018786	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	85.2	54.08	35.94	57.51	61.37	72.12	67.1	49.15	83.59	82.35	81.9	43.23
Merged-chr16-91461900-3	chr16	91461787	91461987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3217.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	69.05	66.65	68.45	57.11	93.68	111.32	67.76	64.51	106.01	90.88	107.03	69.86
Merged-chrX-153498142-5	chrX	153498036	153498236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018798)	promoter-TSS (NM_018798)	-96.0	NM_018798	54609.0	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	27.05	23.9	22.25	17.29	38.46	37.32	31.89	33.7	46.62	50.21	76.88	31.64
Merged-chr5-150216254-2	chr5	150216153	150216353	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43677.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	10.9	3.02	4.56	5.23	19.64	18.81	23.58	27.03	98.74	90.38	117.58	51.06
Merged-chr15-101266813-3	chr15	101266676	101266876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-70.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	235.01	209.52	222.48	175.76	222.55	241.45	138.52	161.64	313.32	305.78	358.27	205.5
Merged-chr11-3163850-2	chr11	3163749	3163949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	RLTR51B_Mm|LTR|ERVK?	29614.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	20.59	21.13	18.83	26.95	29.05	21.32	30.23	18.08	0.0	0.5	0.5	0.0
Merged-chr6-124741547-2	chr6	124741452	124741652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-473.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	22.21	24.65	21.68	14.48	38.05	40.45	15.28	20.24	44.65	43.68	44.72	25.69
Merged-chr9-118150163-3	chr9	118150058	118150258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	38.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	44.82	50.31	55.33	63.15	54.41	70.24	42.19	49.26	69.63	70.29	115.07	37.59
Merged-chr5-35575092-3	chr5	35575011	35575211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	-41.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	34.73	27.92	52.48	33.78	56.87	34.81	26.57	46.49	76.31	66.78	69.34	45.42
Merged-chr7-25385894-3	chr7	25385792	25385992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_073028)	TTS (NR_073028)	4220.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	28.27	22.64	29.66	22.93	38.46	22.26	15.61	23.13	35.21	37.16	57.79	21.62
Merged-chr9-118666241-3	chr9	118666147	118666347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-45445.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	100.95	105.14	138.05	148.81	166.51	172.47	165.75	195.0	206.52	173.73	341.19	136.58
Merged-chr9-20888226-3	chr9	20888132	20888332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	57.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	81.97	76.97	71.88	71.19	116.19	123.55	58.13	84.87	119.0	120.51	163.31	105.26
Merged-chr6-114894667-3	chr6	114894565	114894765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27156.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	29.07	22.13	33.66	37.4	32.32	34.81	34.88	56.5	32.65	34.65	51.76	26.63
Merged-chr15-79670827-3	chr15	79670732	79670932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-36.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	44.82	31.69	52.48	37.81	38.86	42.33	20.26	31.32	51.34	47.2	71.35	25.37
Merged-chr7-5083469-3	chr7	5083373	5083573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010147, intron 2 of 11)	intron (NM_010147, intron 2 of 11)	3238.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	21.0	15.34	25.1	22.12	15.55	19.76	15.28	28.96	28.13	33.14	48.74	24.43
Merged-chr10-30676581-3	chr10	30676485	30676685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-20718.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	95.3	62.13	116.94	135.14	90.0	70.87	129.55	136.99	98.54	98.41	155.27	73.3
Merged-chr7-19276988-3	chr7	19276877	19277077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177691, exon 5 of 5)	3' UTR (NM_177691, exon 5 of 5)	3072.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	94.08	70.43	79.29	28.96	61.77	121.98	65.11	31.88	113.88	106.95	85.42	48.24
Merged-chr3-106558434-3	chr3	106558328	106558528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-10626.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	23.82	27.17	31.38	40.22	49.09	36.06	46.5	55.82	44.65	35.15	73.86	25.69
Merged-chr12-55821110-3	chr12	55820994	55821194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019994, exon 1 of 41)	5' UTR (NM_019994, exon 1 of 41)	422.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	39.98	51.56	38.22	39.42	60.96	72.75	49.49	49.37	52.12	62.26	91.45	39.78
Merged-chr1-87326888-3	chr1	87326794	87326994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110212)	promoter-TSS (NM_001110212)	-104.0	NM_146112	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	96.91	103.13	115.8	112.62	117.0	139.23	86.7	92.72	168.96	158.67	178.88	83.64
Merged-chr4-141506558-3	chr4	141506459	141506659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	32038.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	86.82	46.78	37.65	61.94	84.28	93.13	54.14	63.36	64.71	84.86	95.97	47.3
Merged-chr7-143046500-3	chr7	143046401	143046601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-6249.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	88.84	77.22	75.87	115.83	65.87	66.16	49.49	58.35	67.86	88.37	90.45	47.3
Merged-chr9-53536805-3	chr9	53536733	53536933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	-162.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	311.73	274.42	297.21	295.21	329.33	381.3	308.92	348.45	379.61	409.72	495.95	248.42
Merged-chr11-71230869-2	chr11	71230758	71230958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040696)	promoter-TSS (NM_001040696)	-125.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	73.09	82.5	121.51	100.55	0.0	0.0	0.0	0.0	66.28	64.77	75.37	37.91
Merged-chr1-60627620-3	chr1	60627514	60627714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60849.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	35.53	21.88	37.08	33.78	49.5	53.62	45.18	63.06	35.99	26.61	31.66	20.68
Merged-chr10-128704683-1	chr10	128704583	128704783	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183417, intron 1 of 7)	CpG	368.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	9.69	16.85	6.85	16.89	22.91	21.95	18.27	14.27	19.87	21.59	24.12	22.87
Merged-chr1-24469696-3	chr1	24469559	24469759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	117778.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	42.4	33.96	47.35	26.14	52.77	72.12	52.48	74.1	57.24	58.75	47.23	24.12
Merged-chr15-79229248-3	chr15	79229152	79229352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008837)	promoter-TSS (NM_008837)	79.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	29.07	24.15	30.8	41.43	33.96	44.21	35.21	23.16	35.01	31.63	39.19	37.59
Merged-chr14-50956140-1	chr14	50956040	50956240	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-1.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.41	0.0	0.0	0.0	17.31	37.16	19.6	9.71
Merged-chr1-34823564-3	chr1	34823473	34823673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	19477.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	26.25	14.59	41.07	26.14	34.36	38.26	24.58	35.41	51.53	36.15	67.33	20.68
Merged-chrUn_JH584304-28051-1	chrUn_JH584304	27951	28151	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31638.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	178.4	201.34	266.32	137.84
Merged-chr2-25255399-3	chr2	25255245	25255445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	69.0	NM_001252541	78797.0	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre	NADPH dependent diflavin oxidoreductase 1	protein-coding	49.26	39.49	28.52	30.16	41.73	39.82	22.59	34.37	42.29	43.68	38.19	26.0
Merged-chr7-83884377-3	chr7	83884260	83884460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030705)	promoter-TSS (NM_030705)	-19.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	88.84	83.76	108.96	113.82	89.59	95.33	95.67	112.91	126.27	148.12	163.81	87.09
Merged-chr8-70806705-3	chr8	70806566	70806766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1783.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	41.99	41.25	53.05	39.42	68.73	58.95	65.77	65.19	61.37	50.21	62.81	46.05
Merged-chr9-99568945-3	chr9	99568862	99569062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166138)	promoter-TSS (NM_001166138)	-63.0	NM_028768	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	40.38	38.23	61.61	35.8	62.18	67.73	47.5	46.57	67.46	69.79	95.47	45.74
Merged-chr9-20644833-3	chr9	20644727	20644927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	24.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	50.47	40.5	42.21	41.02	42.96	55.19	23.25	46.23	60.38	37.66	55.78	51.69
Merged-chr8-122281497-3	chr8	122281400	122281600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-641.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	157.48	164.5	217.91	139.56	217.64	231.42	157.12	153.93	243.7	272.64	305.01	169.79
Merged-chr11-4895343-3	chr11	4895230	4895430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	-13.0	NM_172438	107829.0	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	21.0	16.35	27.95	16.09	42.55	50.17	22.59	39.93	29.31	31.63	41.71	15.98
Merged-chr1-182923049-3	chr1	182922951	182923151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31737.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	29.48	21.63	41.64	36.2	46.23	17.56	48.83	61.49	30.29	22.59	45.73	27.88
Merged-chr17-43038904-3	chr17	43038807	43039007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 2 of 5)	intron (NM_178589, intron 2 of 5)	22352.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	59.36	45.78	91.84	64.75	55.64	57.38	46.5	70.01	74.74	55.23	88.44	50.44
Merged-chr2-101175307-3	chr2	101175214	101175414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-449434.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	42.4	28.17	41.07	47.46	63.82	65.22	50.16	81.84	54.09	28.62	80.9	38.53
Merged-chr8-46686905-3	chr8	46686813	46687013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M6|LINE|L1	52602.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	25.84	30.94	33.66	33.38	35.59	41.71	38.53	25.65	26.16	29.62	47.23	25.69
Merged-chr17-31021048-3	chr17	31020934	31021134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36660.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	18.98	23.39	26.81	17.29	42.14	50.8	43.51	57.34	27.93	28.12	32.66	17.86
Merged-chr13-37600381-3	chr13	37600278	37600478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-225660.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	37.15	30.43	35.37	37.4	31.91	54.88	50.49	43.23	41.7	53.22	43.72	25.06
Merged-chr4-86669468-3	chr4	86669372	86669572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	587.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	123.56	120.23	132.92	121.87	110.87	148.63	116.59	101.1	111.92	114.48	180.39	96.8
Merged-chr7-16053352-3	chr7	16053244	16053444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18501.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	23.02	16.85	25.67	16.49	27.82	33.24	27.24	27.22	36.39	34.65	39.7	18.8
Merged-chr11-3140024-2	chr11	3139946	3140146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	16025.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	35.13	31.69	17.11	34.99	31.09	25.4	33.55	21.17	0.0	0.5	0.0	0.0
Merged-chr9-108692056-3	chr9	108691950	108692150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-93.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	43.21	30.69	55.9	35.8	26.59	47.98	24.91	30.93	40.91	31.13	58.79	15.35
Merged-chr13-113509555-3	chr13	113509469	113509669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6725.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	103.37	92.81	166.0	121.87	123.14	160.55	142.17	148.96	144.17	131.55	235.16	93.67
Merged-chr2-79257131-3	chr2	79257038	79257238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	1712.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	55.72	61.88	80.43	78.03	69.96	62.09	48.83	81.2	81.04	60.75	77.38	44.48
Merged-chr4-124751519-3	chr4	124751433	124751633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-179.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	86.82	75.96	92.98	110.2	99.82	82.16	50.49	97.23	122.34	91.38	130.65	72.99
Merged-chr17-5591791-3	chr17	5591692	5591892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99192.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	143.75	95.08	213.35	228.45	235.64	130.13	241.82	243.95	197.28	164.19	314.55	142.22
Merged-chr17-74489510-3	chr17	74489414	74489614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026417)	promoter-TSS (NM_026417)	21.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	102.97	75.46	74.16	82.05	94.91	105.36	82.05	89.19	110.54	112.47	131.15	68.92
Merged-chr17-85090181-2	chr17	85090068	85090268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145984)	promoter-TSS (NM_145984)	99.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	21.4	23.14	28.52	22.12	21.68	19.44	29.9	24.64	19.87	22.59	26.63	18.48
Merged-chr15-88128609-2	chr15	88128521	88128721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	61.38	48.8	66.17	69.18	166.51	129.51	156.78	196.35	0.79	0.0	0.0	0.31
Merged-chr9-105395386-3	chr9	105395297	105395497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172461)	promoter-TSS (NM_172461)	35.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	190.19	236.44	201.37	227.65	151.78	223.58	139.51	180.08	281.26	267.12	369.32	146.92
Merged-chr17-35135819-2	chr17	35135711	35135911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252469)	promoter-TSS (NM_001252469)	97.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	26.25	32.95	15.4	22.93	27.0	44.21	21.59	19.65	47.99	44.19	49.24	18.8
Merged-chr3-21995794-1	chr3	21995694	21995894	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80858.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.02	4.28	2.85	4.42	12.27	5.64	1.99	12.25	2.95	1.51	4.52	7.52
Merged-chr16-13671910-3	chr16	13671814	13672014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	56.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	62.99	77.72	56.48	66.77	63.82	93.76	48.83	70.09	101.88	79.33	119.59	46.99
Merged-chr19-21274330-3	chr19	21274222	21274422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2044.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	65.82	57.6	76.44	78.03	79.37	89.37	89.69	101.58	106.21	91.38	175.87	71.11
Merged-chr17-35236486-3	chr17	35236383	35236583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-113.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	37.96	46.78	26.24	30.57	35.59	46.1	34.88	27.9	34.42	34.14	42.71	28.19
Merged-chr17-45598032-3	chr17	45597925	45598125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	1578.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	52.49	56.59	50.2	22.12	53.59	56.76	31.22	35.72	68.05	77.83	66.83	35.4
Merged-chr19-37157152-3	chr19	37157060	37157260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 2 of 10)	intron (NM_198300, intron 2 of 10)	-16683.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	57.74	49.55	54.76	59.93	73.23	69.93	48.16	67.71	76.31	58.24	77.38	34.15
Merged-chr14-52257883-3	chr14	52257761	52257961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-20289.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	123.56	106.65	96.41	104.57	141.96	137.97	116.59	144.0	196.1	184.27	248.23	128.13
Merged-chr17-8311065-3	chr17	8310965	8311165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134114)	promoter-TSS (NM_134114)	-23.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	74.3	78.73	90.13	87.28	70.77	100.34	60.79	70.4	86.94	68.79	77.88	33.52
Merged-chr9-103230888-2	chr9	103230787	103230987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-601.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	16.96	13.58	26.24	28.96	19.64	22.26	15.28	37.85	24.78	14.06	30.15	19.74
Merged-chr8-84202631-3	chr8	84202502	84202702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5916.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	33.92	33.7	45.07	61.13	69.96	47.35	74.07	82.99	61.56	44.19	79.39	44.48
Merged-chr4-134619273-3	chr4	134619164	134619364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-51413.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	67.03	49.55	88.99	89.69	90.82	78.08	60.12	83.16	59.6	66.78	64.32	58.27
Merged-chr14-27038955-3	chr14	27038846	27039046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134437)	promoter-TSS (NM_134437)	-55.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	56.13	31.19	39.93	30.16	47.87	59.89	38.86	51.31	48.98	41.17	64.32	28.51
Merged-chr9-20385150-3	chr9	20385041	20385241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	17.0	NM_001004190	434377.0	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	73.09	65.4	74.73	96.13	92.05	85.61	52.82	85.12	98.74	75.32	111.55	60.77
Merged-chr6-147476379-3	chr6	147476290	147476490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	25.0	NM_001355713	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	36.75	40.24	35.37	67.17	53.18	63.97	71.75	59.3	47.21	45.69	57.79	31.33
Merged-chr16-55838842-3	chr16	55838771	55838971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-230.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	141.33	165.0	71.88	64.35	143.19	228.59	98.65	62.13	199.64	227.96	164.81	43.54
Merged-chr17-57060457-3	chr17	57060374	57060574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025877)	promoter-TSS (NM_025877)	-611.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	62.18	53.07	42.78	55.1	60.96	81.22	63.44	68.8	61.17	87.87	81.9	45.74
Merged-chr1-106714384-3	chr1	106714291	106714491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177410)	promoter-TSS (NM_177410)	-101.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	67.03	37.48	65.03	61.13	42.55	47.35	42.19	75.25	56.45	69.29	83.91	39.16
Merged-chr4-142023388-3	chr4	142023281	142023481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	5483.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	16.96	13.83	34.23	26.55	23.73	25.71	23.58	25.12	23.41	22.59	25.63	26.0
Merged-chr5-64230310-3	chr5	64230214	64230414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-43.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	158.69	159.22	181.41	164.9	181.23	210.09	166.09	190.8	211.64	196.83	242.2	131.57
Merged-chr19-47090755-3	chr19	47090650	47090850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	-16.0	NM_011053	18572.0	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	131.64	94.57	158.02	121.46	137.46	152.71	77.73	140.64	169.74	146.61	153.26	84.58
Merged-chr4-135876092-3	chr4	135876003	135876203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2257.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	32.71	20.12	22.25	19.31	44.59	26.03	21.92	37.91	67.27	53.73	34.17	31.33
Merged-chr8-123102373-3	chr8	123102278	123102478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	28.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	81.16	69.67	71.31	58.32	87.14	77.77	48.83	60.79	101.69	87.37	88.94	44.17
Merged-chr17-74338733-3	chr17	74338633	74338833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-254.0	NM_001357738	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	40.78	36.22	54.19	39.01	49.5	47.04	38.86	51.5	35.8	45.19	46.23	37.91
Merged-chr19-55469360-2	chr19	55469269	55469469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	153312.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	25.44	34.96	42.21	38.21	54.41	45.78	47.5	51.17	0.39	0.0	0.0	0.31
Merged-chr1-180762865-3	chr1	180762760	180762960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	36817.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	40.78	61.12	63.32	55.1	57.27	59.89	49.16	55.57	50.75	57.24	41.71	40.72
Merged-chr6-97210684-3	chr6	97210587	97210787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022992)	promoter-TSS (NM_022992)	-105.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	46.03	64.64	34.8	43.44	45.82	62.71	52.15	37.12	74.54	68.29	79.89	45.74
Merged-chr5-86066738-3	chr5	86066646	86066846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	42.4	53.32	38.79	55.1	59.73	60.52	43.85	76.15	85.95	62.26	95.97	46.05
Merged-chr10-79987166-3	chr10	79987092	79987292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1408.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	50.47	45.28	73.02	44.24	51.55	50.17	29.56	51.65	59.99	51.21	52.26	52.32
Merged-chr15-41615623-3	chr15	41615532	41615732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	L3|LINE|CR1	166529.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	37.15	28.42	34.8	40.62	45.82	57.38	41.19	63.9	54.09	46.19	80.9	29.13
Merged-chr14-69732676-3	chr14	69732554	69732754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134078)	promoter-TSS (NM_134078)	-84.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	115.08	111.18	146.61	134.74	116.19	135.15	79.06	96.73	150.27	176.24	175.37	83.33
Merged-chr1-182341634-3	chr1	182341536	182341736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175127)	promoter-TSS (NM_175127)	-30.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	26.25	14.34	36.51	22.52	42.55	37.94	26.57	34.51	46.81	37.16	61.81	25.69
Merged-chr17-5800500-4	chr17	5800361	5800561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	971.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	23.42	26.91	21.11	25.74	13.09	26.03	22.26	27.31	26.55	27.62	32.16	28.51
Merged-chr14-70153637-5	chr14	70153507	70153707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001004155)	TTS (NM_001004155)	184.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	11.31	20.37	10.27	16.49	30.68	13.17	26.24	19.23	15.54	23.6	19.6	22.24
Merged-chr15-73724700-3	chr15	73724608	73724808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-89.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	51.69	33.7	33.09	35.8	52.77	62.4	33.55	53.38	72.38	62.76	120.09	36.34
Merged-chr14-73433668-3	chr14	73433571	73433771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48382.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	35.13	32.7	55.9	48.67	43.36	40.76	30.89	51.08	51.34	48.2	69.34	37.28
Merged-chr1-152766565-3	chr1	152766468	152766668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346119)	promoter-TSS (NM_001346119)	26.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	128.41	133.81	101.54	90.9	145.23	163.69	85.37	116.05	151.25	186.78	222.1	99.31
Merged-chr18-82847169-3	chr18	82847081	82847281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8716.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	36.34	24.65	42.21	39.01	39.68	41.08	36.54	50.36	50.16	57.24	76.88	19.74
Merged-chr5-149006891-3	chr5	149006794	149006994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-68.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	47.65	53.58	40.5	71.99	63.0	49.54	41.52	54.5	84.58	81.34	84.92	35.09
Merged-chr5-112344295-3	chr5	112344188	112344388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359853, exon 2 of 14)	5' UTR (NM_001359853, exon 2 of 14)	1193.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	48.05	40.5	74.73	25.74	29.05	39.51	14.95	36.45	66.68	44.69	50.75	39.78
Merged-chr15-76659830-3	chr15	76659732	76659932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-26.0	NM_001358910	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	95.3	60.12	74.73	77.62	100.23	120.1	70.42	103.09	110.93	140.59	193.46	60.46
Merged-chr11-97685838-3	chr11	97685736	97685936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-116.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	100.95	74.45	112.95	93.31	124.37	131.07	64.44	89.19	107.2	112.97	150.74	70.8
Merged-chr9-119568864-2	chr9	119568765	119568965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021544, intron 1 of 27)	intron (NM_021544, intron 1 of 27)	-6187.0	NM_001253860	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	21.0	17.61	22.82	26.95	34.36	17.25	41.85	23.02	2.56	2.51	10.55	5.01
Merged-chr13-8871097-3	chr13	8871001	8871201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-57.0	NM_172445	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	77.53	79.48	65.6	91.7	85.5	67.1	67.76	85.37	108.57	112.97	140.19	66.73
Merged-chr15-31467031-3	chr15	31466936	31467136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-13347.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	23.42	20.12	27.38	25.34	33.96	38.57	38.86	41.38	38.35	31.13	45.73	22.56
Merged-chr1-97770430-3	chr1	97770320	97770520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	248.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	14.94	16.35	15.97	19.31	24.14	24.15	19.6	26.13	29.11	17.57	51.76	20.99
Merged-chr3-67430095-3	chr3	67430000	67430200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	-15.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	31.9	21.88	18.25	43.84	47.87	51.43	43.18	58.93	40.12	34.14	52.76	31.33
Merged-chr11-34833662-3	chr11	34833582	34833782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-41.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	84.39	57.35	53.05	39.82	54.82	90.31	27.9	49.12	105.82	106.45	76.38	39.16
Merged-chr18-70530307-3	chr18	70530212	70530412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	9.0	NM_001136090	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	97.72	100.61	124.93	146.8	170.6	184.07	104.97	173.08	172.1	155.15	217.07	97.74
Merged-chr5-95919553-3	chr5	95919435	95919635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-37404.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	50.88	55.34	73.59	84.46	77.32	82.78	77.4	85.6	53.7	76.82	53.26	39.47
Merged-chr7-127027401-3	chr7	127027300	127027500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-921.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	127.6	114.19	102.68	110.6	136.23	148.01	95.0	89.27	207.11	204.36	181.9	119.35
Merged-chr5-142459299-3	chr5	142459201	142459401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-4630.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	78.34	46.03	74.73	52.69	59.73	63.97	37.87	72.84	102.47	64.27	76.38	52.94
Merged-chr8-85026783-3	chr8	85026628	85026828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026760)	promoter-TSS (NM_026760)	-105.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	88.84	78.48	70.74	82.85	81.41	115.08	60.12	85.09	74.15	92.89	108.03	64.22
Merged-chr8-70753312-3	chr8	70753209	70753409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1370.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	23.02	21.88	25.67	36.2	29.05	26.97	21.59	42.14	33.24	28.62	31.15	26.63
Merged-chr11-69671401-3	chr11	69671285	69671485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159375, intron 1 of 10)	CpG	1038.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	92.47	110.17	123.22	101.35	104.73	153.02	82.05	114.03	157.15	127.03	143.71	88.65
Merged-chr16-91372963-5	chr16	91372886	91373086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001110498, exon 1 of 7)	5' UTR (NM_001110498, exon 1 of 7)	203.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	31.5	32.95	30.8	32.18	17.59	52.37	30.56	32.3	18.29	23.6	24.12	17.23
Merged-chr5-136171707-3	chr5	136171604	136171804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	108.62	88.03	63.89	57.92	88.37	162.12	80.72	55.51	126.08	104.44	106.02	37.91
Merged-chr10-117302005-3	chr10	117301871	117302071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9103.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	91.26	89.54	60.47	66.36	59.73	64.6	45.51	39.87	75.72	61.76	48.24	34.46
Merged-chr13-5863749-3	chr13	5863623	5863823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	2234.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	50.47	53.58	46.78	45.45	56.05	65.22	46.5	62.13	62.55	76.82	69.34	48.56
Merged-chr10-12964444-3	chr10	12964284	12964484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029075)	promoter-TSS (NM_029075)	-125.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	44.42	70.43	57.62	39.82	44.59	83.72	58.46	32.13	58.61	79.33	49.75	36.97
Merged-chr4-155812387-3	chr4	155812281	155812481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207678)	promoter-TSS (NM_207678)	-108.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	114.68	144.38	140.33	139.16	163.23	190.34	122.24	143.33	205.34	151.64	271.84	115.28
Merged-chr12-105032500-3	chr12	105032396	105032596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003145)	promoter-TSS (NR_003145)	-122.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	312.94	340.07	342.27	379.68	348.56	457.82	363.73	417.7	409.9	454.41	499.97	269.1
Merged-chr2-84727374-3	chr2	84727275	84727475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-107.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	115.89	155.19	105.53	113.02	156.69	168.39	114.6	145.35	186.07	245.53	206.02	118.73
Merged-chr9-123929040-4	chr9	123928943	123929143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39649.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	20.59	24.65	25.1	21.72	20.86	27.28	14.95	15.2	19.08	29.12	24.62	16.6
Merged-chr1-180404449-3	chr1	180404336	180404536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73887.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	65.82	57.85	73.59	90.49	85.91	80.27	80.39	80.8	80.25	83.85	107.53	65.16
Merged-chr6-57812556-3	chr6	57812458	57812658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	12567.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	49.26	34.21	63.32	56.71	69.55	51.11	44.18	71.75	84.77	81.84	92.46	53.26
Merged-chr1-45864696-3	chr1	45864586	45864786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60908.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	27.46	21.38	57.05	58.32	48.68	18.5	87.69	98.27	28.91	22.09	44.22	36.97
Merged-chr3-104638592-3	chr3	104638472	104638672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-92.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	34.73	32.45	27.38	27.35	27.41	45.15	23.58	28.23	19.08	28.12	27.13	20.68
Merged-chr13-41466845-3	chr13	41466750	41466950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20510.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	55.32	48.29	70.17	58.72	59.32	55.19	42.19	71.66	78.68	79.33	103.01	48.87
Merged-chrX-14739179-3	chrX	14739089	14739289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	372300.0	NR_033171	67395.0	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	27.86	17.1	31.95	37.0	34.36	20.38	25.91	42.03	27.34	19.08	25.63	7.21
Merged-chr2-75792899-2	chr2	75792794	75792994	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39283.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	17.36	17.1	23.39	19.71	29.86	26.97	25.58	33.93	37.57	27.11	29.65	31.64
Merged-chr8-125568502-3	chr8	125568407	125568607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1356.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	84.39	55.34	88.99	70.38	67.5	65.22	57.13	77.92	71.0	68.79	118.08	80.82
Merged-chr1-43092498-5	chr1	43092403	43092603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357299)	promoter-TSS (NM_001357299)	-17.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	25.04	7.29	17.11	8.45	32.73	30.73	19.6	22.26	36.19	46.19	50.25	32.27
Merged-chr3-88296973-3	chr3	88296866	88297066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009836)	promoter-TSS (NM_009836)	33.0	NM_001357024	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	111.85	119.98	106.1	103.37	144.0	171.21	81.71	121.82	156.96	167.2	172.35	109.02
Merged-chr3-88536752-3	chr3	88536653	88536853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035434)	promoter-TSS (NR_035434)	-371.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	39.17	25.91	22.82	32.18	53.59	35.75	31.89	50.19	46.03	39.67	40.2	19.74
Merged-chr1-166339309-3	chr1	166339199	166339399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39868.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	38.36	47.29	77.58	75.61	81.41	80.27	62.12	115.46	86.15	72.81	124.11	62.97
Merged-chr9-32472523-3	chr9	32472426	32472626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	Lx8|LINE|L1	68926.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	30.28	19.87	30.8	26.14	28.23	29.16	28.23	45.5	21.44	23.6	25.12	19.11
Merged-chr8-34945323-3	chr8	34945227	34945427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 1 of 26)	MTD|LTR|ERVL-MaLR	20363.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	70.66	51.06	80.43	99.75	74.46	71.81	53.48	98.36	86.54	90.88	85.42	55.13
Merged-chr11-22814146-3	chr11	22814057	22814257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45578.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	30.28	42.26	58.19	74.0	45.0	43.27	36.21	62.92	37.17	38.16	38.69	21.93
Merged-chr1-125473419-3	chr1	125473318	125473518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37691.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	43.61	27.42	39.93	34.59	66.68	59.27	47.83	68.58	64.91	60.25	71.35	41.35
Merged-chr14-31569342-3	chr14	31569251	31569451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	8032.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	37.15	37.98	35.94	23.73	47.05	66.79	49.16	32.33	76.31	64.27	59.29	35.4
Merged-chrX-20848439-3	chrX	20848339	20848539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009703)	promoter-TSS (NM_009703)	-104.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	65.82	56.85	69.03	77.62	85.09	103.17	65.44	104.22	74.35	87.87	78.39	56.07
Merged-chr7-81856398-3	chr7	81856306	81856506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-2595.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	28.67	30.18	56.48	32.98	37.23	40.45	29.56	43.35	32.65	26.61	62.31	22.56
Merged-chr6-56902012-3	chr6	56901920	56902120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252374)	promoter-TSS (NM_001252374)	-134.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	32.71	46.78	39.36	43.04	37.23	31.98	36.87	45.79	53.89	55.73	64.32	40.72
Merged-chr7-141540851-3	chr7	141540727	141540927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-970.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	79.14	67.91	136.34	124.68	112.09	98.15	131.21	124.96	73.76	76.82	94.47	79.57
Merged-chr13-12408863-3	chr13	12408760	12408960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144835, intron 13 of 44)	intron (NM_144835, intron 13 of 44)	13485.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	116.7	75.71	124.36	131.92	124.37	117.59	116.59	150.95	130.4	102.93	152.25	71.74
Merged-chr3-104511966-3	chr3	104511860	104512060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310698)	promoter-TSS (NM_001310698)	-42.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	151.42	122.49	156.31	149.22	140.32	176.23	139.84	177.03	201.02	187.79	240.69	115.28
Merged-chr17-56075066-3	chr17	56074955	56075155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024432, exon 2 of 12)	5' UTR (NM_024432, exon 2 of 12)	4278.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	115.08	91.56	120.37	93.71	100.64	114.45	78.39	96.08	138.08	139.59	143.71	89.59
Merged-chr5-19891885-3	chr5	19891785	19891985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	L2a|LINE|L2	-15633.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	81.16	62.63	98.12	88.48	84.28	95.64	89.02	117.39	115.46	85.36	144.71	64.53
Merged-chr13-5870523-3	chr13	5870428	5870628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011803)	TTS (NM_011803)	9039.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	49.67	65.65	55.9	25.34	61.37	79.65	39.53	51.73	86.15	85.86	101.0	37.91
Merged-chr6-86579462-3	chr6	86579350	86579550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48724.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	40.38	20.12	39.36	26.55	47.46	45.47	31.56	27.2	59.01	35.15	48.24	32.58
Merged-chr7-43273692-3	chr7	43273594	43273794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	39606.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	84.8	46.78	81.0	101.76	87.96	77.14	63.11	105.25	89.89	91.89	106.02	57.33
Merged-chr9-56950872-3	chr9	56950762	56950962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-62.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	130.43	103.63	128.92	102.56	142.37	192.22	93.67	129.62	169.35	142.1	213.05	140.34
Merged-chr14-59260282-3	chr14	59260162	59260362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164329)	promoter-TSS (NM_001164329)	-46.0	NM_001164329	628693.0	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	27.46	26.91	65.03	56.31	29.46	37.94	40.19	49.37	41.11	33.64	54.77	33.83
Merged-chr3-108200581-3	chr3	108200581	108200781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081320, exon 1 of 3)	exon (NM_001081320, exon 1 of 3)	153.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	75.51	68.16	65.03	97.73	58.91	81.84	90.68	72.81	79.86	85.86	107.03	70.48
Merged-chr9-54501940-3	chr9	54501831	54502031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172771)	promoter-TSS (NM_172771)	-305.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	118.31	102.37	98.69	109.8	114.96	168.08	89.35	99.2	149.29	137.58	180.39	66.73
Merged-chr2-165922548-3	chr2	165922423	165922623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37685.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	32.71	15.34	15.97	19.31	30.27	20.07	14.95	15.0	31.86	27.11	36.18	16.92
Merged-chr6-22359194-3	chr6	22359087	22359287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-3106.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	36.34	42.76	39.36	47.46	54.82	56.13	45.18	67.46	55.66	40.67	98.99	33.52
Merged-chr9-61368550-3	chr9	61368485	61368685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3781.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	25.44	28.17	24.53	10.05	29.46	48.92	30.56	12.34	38.16	38.16	15.58	15.66
Merged-chr15-102470417-3	chr15	102470314	102470514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001174073)	promoter-TSS (NM_001174073)	-218.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	180.09	211.54	152.88	159.67	189.41	232.36	128.88	160.65	234.26	235.49	266.82	142.85
Merged-chr6-35568983-3	chr6	35568886	35569086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29098.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	53.7	55.59	54.19	29.36	53.59	121.35	53.81	26.22	79.27	84.35	70.35	31.33
Merged-chr3-96500482-3	chr3	96500372	96500572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24713.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	41.99	46.78	45.64	39.82	28.64	50.49	15.61	32.22	71.4	58.24	47.23	58.27
Merged-chr10-85386709-1	chr10	85386609	85386809	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	-105.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	4.85	0.75	0.0	0.0	3.27	1.25	1.66	4.35	181.54	170.72	196.97	117.16
Merged-chr6-135947616-1	chr6	135947516	135947716	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	225895.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	1.62	0.75	2.28	1.61	0.0	0.0	0.33	0.03	18.69	25.11	24.62	18.8
Merged-chr7-73595400-3	chr7	73595303	73595503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37008.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	77.53	57.35	71.88	81.24	101.05	106.61	51.82	89.24	91.85	86.36	136.17	62.03
Merged-chr16-16983353-3	chr16	16983241	16983441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011949)	promoter-TSS (NM_011949)	-41.0	NM_001357115	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	97.31	50.56	92.98	67.97	81.82	106.93	50.49	81.59	101.49	73.81	110.04	62.34
Merged-chr7-27447819-3	chr7	27447733	27447933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144923)	promoter-TSS (NM_144923)	-145.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	299.62	254.29	329.72	277.52	304.37	400.43	255.77	281.13	366.63	381.1	471.83	229.94
Merged-chr10-96435330-3	chr10	96435215	96435415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181686.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	24.63	20.63	27.38	29.36	31.5	35.43	23.25	23.33	34.22	22.09	25.63	20.99
Merged-chr7-13054766-3	chr7	13054662	13054862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	2.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	87.22	85.77	99.26	101.76	123.14	145.5	103.97	152.61	147.12	140.59	228.13	84.58
Merged-chr12-79642068-3	chr12	79641975	79642175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282658.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	21.4	11.57	17.11	26.55	28.23	34.81	24.58	30.31	28.52	24.1	21.1	15.66
Merged-chr16-87698913-3	chr16	87698817	87699017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-37.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	158.29	148.65	166.0	194.26	181.23	228.28	152.13	158.27	213.01	186.28	258.78	128.13
Merged-chr16-90187665-3	chr16	90187569	90187769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33073.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	45.23	43.01	36.51	17.7	43.36	47.66	47.83	35.66	56.65	51.21	59.29	23.18
Merged-chr6-120836177-3	chr6	120836070	120836270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-60.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	107.01	94.57	104.96	74.41	105.14	122.29	69.76	94.68	154.01	124.52	177.38	71.11
Merged-chr17-57078523-3	chr17	57078443	57078643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153551)	promoter-TSS (NM_153551)	-33.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	55.32	34.21	74.16	31.37	38.46	79.33	42.19	57.84	60.19	72.3	99.99	52.63
Merged-chr10-60273586-3	chr10	60273487	60273687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4041.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	33.52	27.92	41.07	29.76	39.27	43.27	39.2	40.85	58.02	51.21	63.82	31.64
Merged-chr13-112413787-1	chr13	112413687	112413887	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50283.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.63	7.29	3.99	5.63	4.5	0.94	13.29	8.69	9.05	9.04	6.53	1.57
Merged-chr18-4266200-3	chr18	4266117	4266317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86736.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	60.17	53.32	96.98	67.17	79.37	77.45	71.42	94.49	84.97	51.21	87.43	61.71
Merged-chr17-50470638-3	chr17	50470523	50470723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38924.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	40.78	51.06	39.36	39.82	49.91	65.54	18.6	38.89	90.87	82.35	38.19	37.59
Merged-chr4-32352134-3	chr4	32352037	32352237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	-65298.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	31.09	15.59	38.22	28.15	48.68	61.77	77.4	103.54	34.03	18.58	44.72	28.51
Merged-chr7-55968682-3	chr7	55968575	55968775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	ORR1E-int|LTR|ERVL-MaLR	6144.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	30.28	21.13	26.81	48.26	46.23	29.16	26.24	41.55	33.63	34.14	41.71	20.36
Merged-chr5-110424359-3	chr5	110424252	110424452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	24151.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	68.24	50.31	88.99	78.03	56.87	66.16	52.15	64.04	71.0	79.33	104.01	47.3
Merged-chr5-135064139-3	chr5	135064030	135064230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025362)	promoter-TSS (NM_025362)	-76.0	NM_025362	66114.0	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	77.12	71.43	69.03	67.57	89.59	90.94	34.21	61.65	96.18	98.91	82.91	50.44
Merged-chr16-18248881-3	chr16	18248773	18248973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	-10.0	NM_001357146	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	194.23	184.12	233.32	169.73	185.73	262.15	169.74	179.92	235.24	242.01	295.46	128.44
Merged-chr7-122208547-3	chr7	122208461	122208661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10935.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	52.49	42.01	62.75	62.74	70.77	54.56	51.15	66.87	72.58	66.78	94.97	45.11
Merged-chr11-106669915-3	chr11	106669806	106670006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	45375.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	73.09	69.67	38.22	47.86	65.05	105.36	53.15	33.39	49.57	46.19	53.26	18.17
Merged-chr4-141656327-3	chr4	141656227	141656427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	7788.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	29.48	33.2	35.94	37.4	66.27	47.98	41.19	48.28	43.66	47.7	67.33	35.4
Merged-chr19-46499974-3	chr19	46499875	46500075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	93.28	111.43	82.72	94.92	114.55	123.86	63.44	70.4	181.35	145.61	141.2	89.91
Merged-chr10-34171907-3	chr10	34171803	34172003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	35648.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	81.16	64.14	96.41	61.54	90.41	98.15	71.42	87.45	87.92	96.4	124.11	48.24
Merged-chr4-150556542-3	chr4	150556444	150556644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95630.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	34.32	25.4	47.92	37.0	32.73	24.46	23.92	46.57	45.04	35.15	53.77	38.22
Merged-chr2-84382221-3	chr2	84382099	84382299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43067.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	29.48	28.93	53.05	46.66	56.05	64.6	29.9	84.51	22.23	37.66	27.64	17.86
Merged-chr2-160019121-3	chr2	160019004	160019204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	2451.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	65.41	49.3	53.62	72.8	48.27	67.42	58.46	58.37	69.63	64.77	62.81	38.85
Merged-chr8-111259249-3	chr8	111259166	111259366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009149)	promoter-TSS (NM_009149)	-64.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	65.01	42.01	34.8	67.97	39.68	43.27	28.23	53.69	53.3	72.3	86.43	51.69
Merged-chr10-54132835-3	chr10	54132731	54132931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56909.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	50.88	44.52	49.63	54.3	29.86	44.84	22.92	37.21	56.45	51.72	47.23	21.3
Merged-chr8-94634250-3	chr8	94634161	94634361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359093, intron 6 of 14)	intron (NM_001359093, intron 6 of 14)	32320.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	18.17	15.59	57.05	31.77	21.27	26.03	29.23	55.51	24.0	18.58	50.75	35.4
Merged-chr12-104131261-3	chr12	104131162	104131362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3266.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	28.27	21.13	58.76	43.04	55.64	62.71	48.83	59.3	53.5	49.71	95.97	45.42
Merged-chr7-116446878-3	chr7	116446780	116446980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3422.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	100.14	93.32	122.65	136.35	131.32	133.58	106.96	155.13	134.93	139.59	193.96	99.62
Merged-chr1-80758577-3	chr1	80758473	80758673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175291)	promoter-TSS (NM_175291)	-20.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	43.61	35.72	29.09	34.99	27.82	34.49	34.55	37.23	51.73	49.21	58.29	29.13
Merged-chr17-33843220-3	chr17	33843127	33843327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305169)	promoter-TSS (NM_001305169)	136.0	NM_019421	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	25.44	31.44	27.38	28.56	33.96	57.38	33.22	35.36	54.29	40.67	44.22	34.77
Merged-chr8-71882008-3	chr8	71881887	71882087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145624)	promoter-TSS (NM_145624)	-81.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	93.68	73.95	84.43	65.56	58.09	52.99	46.5	48.03	97.16	102.43	116.07	53.26
Merged-chr4-155839694-2	chr4	155839639	155839839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024263)	promoter-TSS (NM_024263)	59.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	39.17	51.06	48.49	49.47	68.32	64.6	53.15	69.59	4.13	3.01	3.52	5.95
Merged-chr1-45916462-1	chr1	45916362	45916562	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	9132.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	1.62	2.77	7.99	9.65	1.64	2.51	8.97	9.87	4.52	8.54	0.5	3.45
Merged-chr2-143915421-3	chr2	143915313	143915513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019771)	promoter-TSS (NM_019771)	82.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	104.18	72.19	104.96	111.41	105.96	84.66	76.4	99.2	101.69	91.89	113.06	56.39
Merged-chr6-108446324-3	chr6	108446199	108446399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-43444.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	41.59	24.15	57.62	42.63	40.09	31.67	56.8	89.58	61.76	33.64	67.84	50.75
Merged-chr15-27874085-3	chr15	27873992	27874192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	151756.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	29.07	29.43	31.38	39.01	36.0	38.88	46.17	57.31	26.36	33.64	46.73	28.82
Merged-chr18-61481860-3	chr18	61481755	61481955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045419, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	2752.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	109.43	119.98	124.93	77.62	170.19	144.56	152.8	147.22	236.22	192.31	314.05	126.87
Merged-chr18-65934982-3	chr18	65934876	65935076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013833, exon 3 of 3)	3' UTR (NM_013833, exon 3 of 3)	4113.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	34.32	39.24	38.22	32.98	26.18	25.4	26.91	34.35	27.14	17.57	37.18	31.33
Merged-chr9-32508881-3	chr9	32508786	32508986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32566.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	73.49	43.01	54.76	67.17	50.73	61.15	63.44	74.8	64.12	56.74	99.49	50.44
Merged-chr10-75935846-3	chr10	75935732	75935932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175329, exon 2 of 5)	5' UTR (NM_175329, exon 2 of 5)	2702.0	NM_175329	103172.0	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	35.94	24.15	32.52	29.76	57.68	61.77	42.52	66.59	59.01	58.24	68.34	42.6
Merged-chr2-174344327-3	chr2	174344241	174344441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14252.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	39.17	37.48	25.1	46.66	56.87	47.66	41.52	38.75	62.74	68.79	53.26	41.04
Merged-chr12-111814008-3	chr12	111813901	111814101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028875)	promoter-TSS (NM_028875)	-122.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	193.42	214.3	268.69	265.85	254.46	315.77	268.06	287.1	346.56	350.97	431.13	173.86
Merged-chr19-56566191-3	chr19	56566065	56566265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	17904.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	43.61	34.96	49.06	41.83	39.27	45.47	30.89	33.45	44.06	25.11	39.19	20.05
Merged-chr10-39412961-3	chr10	39412867	39413067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	43168.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	50.47	29.43	76.44	68.37	49.09	65.54	66.1	97.88	83.99	58.75	116.58	56.07
Merged-chr11-72301591-3	chr11	72301510	72301710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037713)	promoter-TSS (NM_001037713)	-19.0	NM_001291153	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	28.27	30.18	22.25	22.93	29.05	34.49	41.52	34.32	25.57	29.62	36.68	23.18
Merged-chr14-66844804-3	chr14	66844700	66844900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	23800.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	33.92	28.17	26.81	20.11	33.96	37.63	20.59	26.52	37.57	65.27	43.72	17.23
Merged-chr6-42419652-3	chr6	42419553	42419753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14124.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	27.86	24.4	7.42	15.69	47.46	35.75	20.59	21.56	31.08	58.75	43.72	18.8
Merged-chr11-48856960-3	chr11	48856858	48857058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14462.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	31.9	29.18	15.97	28.96	17.18	36.06	14.62	18.79	23.6	39.67	23.62	26.63
Merged-chr15-79741398-3	chr15	79741288	79741488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1148.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	28.27	17.36	21.11	17.29	26.18	28.54	14.62	15.39	30.68	26.61	36.18	21.3
Merged-chr7-30563271-3	chr7	30563179	30563379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	-61.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	58.55	54.58	53.62	58.32	76.91	83.72	35.54	43.99	75.53	97.91	113.56	51.06
Merged-chr1-77741492-3	chr1	77741397	77741597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	-226409.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	39.17	29.68	69.03	59.93	44.18	42.33	50.16	117.9	76.51	67.78	145.22	67.35
Merged-chr5-149272671-3	chr5	149272573	149272773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	7669.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	16.15	11.07	17.11	21.32	26.59	16.62	20.93	36.59	19.28	22.09	33.16	22.87
Merged-chr13-106639178-3	chr13	106639078	106639278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	297780.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	50.47	46.28	55.33	53.09	45.41	43.59	33.55	68.66	50.55	56.74	77.88	46.05
Merged-chr7-13054370-3	chr7	13054273	13054473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145819, intron 1 of 5)	CpG	391.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	43.21	25.66	27.95	26.55	40.5	46.1	37.2	42.79	66.48	51.21	67.33	37.28
Merged-chr2-150749031-3	chr2	150748970	150749170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-11.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	146.58	129.29	128.92	153.64	136.64	168.7	110.61	141.06	178.0	149.63	236.17	138.46
Merged-chr7-66384421-3	chr7	66384304	66384504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 1 of 33)	(CA)n|Simple_repeat|Simple_repeat	-2680.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	26.65	27.42	27.38	16.49	28.64	38.88	19.6	37.07	42.29	55.73	28.64	24.43
Merged-chr17-33760485-3	chr17	33760384	33760584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	2.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	231.37	265.11	267.54	280.74	300.28	373.47	232.52	255.9	301.52	324.86	341.69	173.24
Merged-chr11-94386474-3	chr11	94386379	94386579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	6497.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	181.3	160.47	196.81	187.43	194.32	206.64	184.35	174.37	173.28	170.21	216.57	114.66
Merged-chr10-43668117-3	chr10	43668026	43668226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74699.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	65.41	60.87	99.26	93.31	89.59	90.31	72.41	119.55	98.34	95.9	130.65	72.68
Merged-chr10-22200430-2	chr10	22200328	22200528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	RLTR45|LTR|ERVK	26526.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	28.67	20.37	36.51	30.57	25.36	39.2	20.93	17.64	5.9	4.02	4.02	1.88
Merged-chr6-113076672-5	chr6	113076554	113076754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028385)	promoter-TSS (NM_028385)	590.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	136.08	195.19	175.13	158.87	123.14	179.36	177.71	130.35	188.82	247.04	247.22	112.15
Merged-chr6-97179635-1	chr6	97179535	97179735	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-511.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	7.27	6.29	6.85	12.47	12.27	12.23	7.97	12.22	15.93	9.04	17.08	7.21
Merged-chr7-3292961-3	chr7	3292883	3293083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-45.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	92.87	74.45	77.01	67.17	39.27	44.21	23.25	34.26	80.05	99.42	100.5	35.4
Merged-chr8-39594923-3	chr8	39594823	39595023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 8 of 9)	Tigger5b|DNA|TcMar-Tigger	47755.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	41.59	27.92	47.35	59.93	71.18	34.49	64.44	87.7	54.09	64.77	54.77	46.05
Merged-chr11-70000545-3	chr11	70000431	70000631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-95.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	75.11	59.61	49.63	57.11	65.87	61.15	42.52	44.05	90.48	73.31	65.83	40.41
Merged-chr12-112840367-3	chr12	112840295	112840495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10874.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	26.65	38.74	53.62	45.45	32.32	34.18	21.59	32.94	25.18	31.63	49.75	20.68
Merged-chr19-41482413-2	chr19	41482287	41482487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-42865.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	23.42	19.12	9.7	20.51	16.77	21.64	19.93	18.45	25.57	31.13	18.09	14.41
Merged-chr5-76524848-3	chr5	76524762	76524962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4445.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	23.42	17.36	30.8	22.93	20.05	31.67	39.53	37.07	33.83	39.16	50.75	26.94
Merged-chr8-84981732-2	chr8	84981673	84981873	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3025.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	3.63	8.55	8.56	2.82	15.96	9.72	5.65	7.18	11.41	9.54	17.08	6.58
Merged-chr17-71483979-1	chr17	71483879	71484079	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-8636.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	1.21	0.0	4.56	2.41	0.82	0.63	2.66	1.29	111.13	110.97	150.74	61.4
Merged-chr16-91522229-3	chr16	91522126	91522326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5318.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	83.99	65.4	81.0	108.59	98.59	91.88	74.07	100.88	89.69	82.85	96.48	83.33
Merged-chr8-119825010-3	chr8	119824895	119825095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	15584.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	79.14	37.98	76.44	70.38	62.59	41.08	63.78	91.26	62.15	46.7	68.84	46.36
Merged-chr1-44102508-3	chr1	44102415	44102615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029368)	promoter-TSS (NM_029368)	-74.0	NM_001356297	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	151.83	121.24	147.18	163.29	174.28	138.29	124.9	189.81	158.33	144.61	150.24	111.52
Merged-chr13-58359166-3	chr13	58359059	58359259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4212.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	122.35	87.78	92.41	100.15	142.78	158.67	117.92	155.3	148.5	105.94	160.79	69.23
Merged-chr14-73049132-3	chr14	73049025	73049225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133720)	promoter-TSS (NM_133720)	-11.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	34.73	28.93	43.93	45.05	41.73	44.84	14.62	44.66	60.78	52.72	58.79	26.63
Merged-chr8-126763785-3	chr8	126763693	126763893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85227.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	31.5	22.13	65.6	57.11	69.55	47.35	57.13	69.81	34.42	51.72	71.35	37.28
Merged-chr1-171234400-3	chr1	171234299	171234499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-50.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	42.8	39.49	32.52	41.83	63.0	67.1	30.23	40.4	54.29	71.8	86.43	56.39
Merged-chr15-34082732-3	chr15	34082649	34082849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	30.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	144.96	145.13	163.15	134.74	112.5	124.17	137.85	116.64	153.22	160.67	152.25	84.58
Merged-chr5-52783061-3	chr5	52782938	52783138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308144)	promoter-TSS (NM_001308144)	-17.0	NM_001308144	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	33.52	32.95	31.95	27.75	51.96	39.51	27.57	43.71	63.33	61.26	80.4	34.15
Merged-chr7-4274039-3	chr7	4273943	4274143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011093)	promoter-TSS (NM_011093)	-100.0	NM_011093	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	42.8	29.18	49.06	53.09	81.82	71.49	58.13	73.91	80.25	64.27	113.06	47.62
Merged-chr2-90940917-3	chr2	90940783	90940983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198683, intron 1 of 13)	CpG	486.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	15.75	17.61	13.12	20.11	25.77	15.37	25.24	22.09	23.6	15.06	24.62	13.78
Merged-chr17-45686310-3	chr17	45686190	45686390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	-59.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	81.57	71.69	63.89	29.76	58.91	93.76	45.51	42.25	106.41	101.43	78.89	52.63
Merged-chr7-104366509-3	chr7	104366411	104366611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7865.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	29.48	16.1	23.39	27.75	41.73	39.82	22.92	48.9	42.29	35.15	51.76	20.05
Merged-chr11-44520260-4	chr11	44520212	44520412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	935.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	31.09	34.46	39.93	45.45	35.18	40.14	42.52	38.72	54.88	54.73	73.36	38.22
Merged-chr4-126412746-3	chr4	126412647	126412847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153402, intron 2 of 18)	RMER19B|LTR|ERVK	16795.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	27.86	26.16	38.22	48.26	28.23	39.51	48.16	34.29	23.01	26.11	28.14	16.6
Merged-chr2-3727810-3	chr2	3727712	3727912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	14354.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	24.63	16.6	27.38	29.36	29.46	22.89	26.57	41.97	23.6	20.59	37.18	14.72
Merged-chr3-142394241-3	chr3	142394142	142394342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1454.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	44.01	27.92	29.66	53.89	36.0	38.57	29.56	53.02	44.84	26.11	47.23	37.28
Merged-chr3-96302825-3	chr3	96302723	96302923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8854.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	22.61	15.85	35.37	31.77	43.36	32.3	31.89	53.13	40.32	69.79	50.75	37.91
Merged-chr1-178336587-3	chr1	178336480	178336680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149827, intron 1 of 16)	CpG	1235.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	155.87	137.08	120.37	148.41	144.82	165.25	127.55	129.79	189.61	185.28	203.0	112.78
Merged-chr2-60884204-3	chr2	60884109	60884309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-2771.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	41.59	24.4	42.21	41.43	56.46	60.83	25.58	45.98	68.64	62.26	87.43	45.42
Merged-chr7-100534402-3	chr7	100534308	100534508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2692.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	21.8	18.61	35.94	32.18	24.14	25.4	15.61	22.68	33.83	26.11	44.22	20.36
Merged-chr9-35187683-3	chr9	35187568	35187768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177847, exon 7 of 7)	3' UTR (NM_001177847, exon 7 of 7)	-11681.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	44.42	44.27	27.38	16.49	24.96	47.35	28.57	21.95	68.45	44.69	57.28	23.49
Merged-chr10-94035442-3	chr10	94035328	94035528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053072)	promoter-TSS (NM_053072)	314.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	4.85	18.11	28.52	23.73	16.36	23.83	14.95	17.66	24.78	23.6	36.68	21.93
Merged-chr2-91972364-3	chr2	91972261	91972461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-8798.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	167.17	186.89	177.98	209.95	162.82	175.6	150.14	159.42	162.46	175.74	196.97	135.64
Merged-chr8-106683113-3	chr8	106683012	106683212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173037)	promoter-TSS (NM_173037)	44.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	48.86	35.21	35.94	28.15	67.09	69.3	39.53	44.72	99.33	85.36	84.92	42.92
Merged-chr17-88440522-3	chr17	88440370	88440570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-234.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	74.7	83.76	76.44	81.65	81.0	102.22	73.08	98.72	93.23	117.49	114.06	60.77
Merged-chr9-75196536-3	chr9	75196430	75196630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010864, intron 32 of 40)	intron (NM_010864, intron 32 of 40)	-35484.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	18.57	21.63	30.8	21.72	54.82	35.43	38.86	50.36	54.48	64.27	39.19	35.4
Merged-chr1-86229627-3	chr1	86229545	86229745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-73576.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	39.17	34.21	61.04	49.47	70.77	59.58	42.52	79.01	50.35	52.22	79.89	38.22
Merged-chr1-43337529-3	chr1	43337426	43337626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108225.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	21.0	16.6	21.11	26.55	30.27	15.05	33.88	41.36	25.57	18.08	37.69	30.07
Merged-chr19-12833780-3	chr19	12833671	12833871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361971)	TTS (NM_001361971)	-28006.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	63.4	68.42	83.86	89.29	124.37	97.83	72.41	99.98	82.81	57.74	78.39	39.47
Merged-chr12-108794394-5	chr12	108794298	108794498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009537, intron 1 of 4)	CpG-3499	1087.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	17.77	36.47	21.68	25.74	51.96	57.7	70.09	49.35	60.19	65.27	69.85	43.54
Merged-chr7-140953902-3	chr7	140953813	140954013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030694)	TTS (NM_030694)	2048.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	55.72	52.32	61.61	49.47	50.32	60.21	50.16	60.73	81.23	75.32	75.37	52.0
Merged-chr2-38926321-3	chr2	38926122	38926322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010264, exon 1 of 11)	5' UTR (NM_010264, exon 1 of 11)	239.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	37.96	54.33	32.52	57.51	34.77	45.15	45.51	34.71	41.89	60.75	56.78	41.35
Merged-chr17-39845000-10	chr17	39844886	39845086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	1989.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	734.91	1098.17	675.42	713.9	299.46	315.45	259.09	167.22	282.64	300.76	302.49	404.74
Merged-chr6-134567034-4	chr6	134566938	134567138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008514)	promoter-TSS (NM_008514)	-125.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	22.21	30.69	26.81	16.09	26.18	26.03	41.52	18.36	34.42	31.13	27.64	17.23
Merged-chr7-45488843-3	chr7	45488739	45488939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027903)	promoter-TSS (NM_027903)	-34.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	29.88	26.41	41.07	51.08	47.46	53.93	37.87	42.48	57.63	45.69	66.33	43.86
Merged-chr2-104590331-3	chr2	104590232	104590432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-152.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	297.19	283.98	301.77	287.17	323.19	402.63	312.24	356.69	350.3	322.85	463.29	214.59
Merged-chr1-144004952-3	chr1	144004872	144005072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-823.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	39.17	30.18	23.39	24.94	40.91	44.21	22.59	42.42	38.75	29.62	44.22	32.58
Merged-chr9-123924844-3	chr9	123924739	123924939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	43853.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	161.52	173.55	156.31	147.61	135.0	155.85	124.9	113.69	181.15	190.3	235.16	96.8
Merged-chr6-138140494-3	chr6	138140388	138140588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-39.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	22.21	21.13	19.97	25.74	38.46	26.65	16.28	29.16	19.08	18.08	20.6	7.83
Merged-chr7-75782161-3	chr7	75782082	75782282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66156.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	74.3	79.23	82.72	58.72	91.64	128.88	97.99	108.45	120.18	114.98	114.57	54.82
Merged-chr9-7567524-3	chr9	7567434	7567634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008611, exon 10 of 10)	exon (NM_008611, exon 10 of 10)	-3862.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	88.84	81.75	120.94	152.43	151.37	143.93	130.54	142.57	147.52	135.57	198.98	110.27
Merged-chr9-41105272-3	chr9	41105171	41105371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-25765.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	15.34	26.16	30.8	23.73	25.36	22.58	22.59	37.4	40.32	25.11	70.85	40.72
Merged-chr4-154864408-3	chr4	154864302	154864502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_154548, exon 5 of 5)	non-coding (NR_154548, exon 5 of 5)	-5183.0	NM_013783	27390.0	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	29.48	19.37	38.22	22.93	28.23	42.65	16.61	32.24	31.86	40.17	44.22	26.94
Merged-chr7-49159139-3	chr7	49159048	49159248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	3010.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	16.96	15.34	34.8	33.78	65.87	47.66	86.36	91.09	48.98	51.72	88.44	40.1
Merged-chr16-24653269-3	chr16	24653177	24653377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-68578.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	30.28	15.34	43.93	39.82	38.46	28.22	21.59	40.82	24.98	29.62	40.2	18.8
Merged-chr5-144100331-3	chr5	144100249	144100449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-87.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	17.36	21.13	19.4	16.09	30.27	22.26	10.3	27.48	36.98	36.15	37.18	22.24
Merged-chr17-27840019-3	chr17	27839923	27840123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-64.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	112.66	107.4	85.57	79.64	97.37	121.67	61.45	72.7	127.45	142.1	90.95	77.38
Merged-chr9-89261957-3	chr9	89261858	89262058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	50574.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	48.46	51.56	81.0	113.82	78.14	90.94	87.36	125.24	56.65	69.79	89.94	42.92
Merged-chr6-88902270-3	chr6	88902167	88902367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	16.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	105.39	145.13	101.54	71.59	173.87	203.51	123.57	140.8	196.49	251.55	169.34	115.91
Merged-chr15-50827538-3	chr15	50827428	50827628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	61521.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	64.61	37.98	46.21	45.45	47.87	35.12	38.86	49.01	71.99	42.68	49.75	15.98
Merged-chr18-64887199-3	chr18	64887097	64887297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-559.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	32.3	25.4	44.5	30.97	31.5	35.43	24.58	29.94	48.39	43.68	65.32	21.62
Merged-chr8-69006067-3	chr8	69005956	69006156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82680.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	22.61	19.62	28.52	22.93	28.23	39.51	24.58	23.86	46.42	49.71	68.84	43.54
Merged-chr16-76762031-3	chr16	76761930	76762130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	17062.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	64.61	42.26	77.01	61.13	41.32	68.36	48.5	53.24	60.38	26.11	53.26	23.49
Merged-chr13-106836356-3	chr13	106836244	106836444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	100614.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	59.36	38.48	43.93	51.88	87.55	38.26	38.2	85.21	48.39	40.17	67.33	36.34
Merged-chr2-11496888-3	chr2	11496778	11496978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	MTEb|LTR|ERVL-MaLR	5212.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	92.87	101.11	128.35	156.05	53.18	96.89	114.27	116.33	108.38	48.7	119.59	75.5
Merged-chr19-47147947-3	chr19	47147858	47148058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3784.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	25.44	18.36	25.67	25.34	20.05	30.42	11.63	19.85	26.55	23.6	19.09	13.47
Merged-chr12-36042545-3	chr12	36042442	36042642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-64.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	61.78	40.24	42.21	75.61	69.96	44.84	50.82	79.65	50.16	37.16	37.69	25.06
Merged-chr2-167815311-3	chr2	167815158	167815358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117069.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	51.69	41.5	53.05	41.02	81.0	68.67	57.13	53.55	80.64	67.28	102.51	47.62
Merged-chr8-126759907-1	chr8	126759807	126760007	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89113.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	4.44	2.01	6.28	10.46	16.77	7.53	20.59	37.04	7.28	0.5	2.01	10.96
Merged-chr19-32804915-3	chr19	32804814	32805014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 5 of 8)	intron (NM_008960, intron 5 of 8)	47337.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	23.02	18.86	25.67	23.33	59.73	57.38	34.55	41.52	34.62	40.67	28.64	15.04
Merged-chr10-58255466-3	chr10	58255392	58255592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-34.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	128.0	82.75	147.75	151.23	112.91	146.44	102.31	155.05	150.07	143.6	214.06	84.27
Merged-chr17-32389413-3	chr17	32389286	32389486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033525)	promoter-TSS (NR_033525)	53.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	38.76	34.71	45.64	36.6	41.32	49.86	41.19	44.89	50.94	49.71	56.28	26.94
Merged-chr14-103346418-1	chr14	103346318	103346518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_207215, exon 1 of 85)	exon (NM_207215, exon 1 of 85)	382.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	14.54	22.39	14.26	14.08	17.59	17.25	20.93	18.42	21.64	21.59	22.61	20.36
Merged-chr11-69420003-3	chr11	69419893	69420093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6318.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	22.21	15.59	23.96	12.47	28.23	39.51	18.6	15.28	34.81	39.67	41.71	15.35
Merged-chr2-26964418-3	chr2	26964314	26964514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207234)	promoter-TSS (NM_207234)	-28.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	31.09	27.92	17.11	32.58	30.27	36.37	17.94	31.71	33.63	32.64	34.67	19.42
Merged-chr11-106036801-3	chr11	106036710	106036910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-62.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	138.1	130.79	116.94	99.34	155.87	189.71	86.7	134.8	171.51	190.3	208.03	118.73
Merged-chr19-25138339-3	chr19	25138226	25138426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 23 of 47)	B1_Mur2|SINE|Alu	-98649.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	59.36	31.44	59.9	86.07	75.28	63.03	54.48	75.0	77.89	96.91	136.17	44.8
Merged-chr5-112950992-3	chr5	112950892	112951092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54630.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	42.8	38.74	47.92	35.39	40.91	54.56	33.88	31.57	38.55	38.16	41.2	20.99
Merged-chr14-67884902-3	chr14	67884813	67885013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-25168.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	55.32	63.39	61.61	104.97	59.32	76.51	59.46	59.75	48.19	71.8	68.34	38.53
Merged-chr17-74339272-4	chr17	74339259	74339459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162870, exon 1 of 17)	exon (NM_001162870, exon 1 of 17)	372.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	20.59	18.11	24.53	38.61	27.0	20.7	29.56	20.89	19.08	20.08	18.59	25.06
Merged-chr2-150782546-3	chr2	150782450	150782650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-4246.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	49.26	35.21	56.48	56.71	59.32	53.93	64.77	69.56	39.93	33.14	75.87	32.27
Merged-chr7-30323158-3	chr7	30323054	30323254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-779.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	121.54	89.8	78.72	51.48	134.6	137.66	102.31	67.07	50.16	48.2	45.22	15.98
Merged-chr7-126396880-3	chr7	126396785	126396985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-148.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	195.44	218.83	198.52	195.87	215.6	278.77	136.85	189.0	226.98	254.07	204.51	141.28
Merged-chr9-120709414-1	chr9	120709314	120709514	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	132083.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.04	1.26	0.57	7.24	15.14	14.74	15.28	13.88	0.0	0.0	0.0	0.63
Merged-chr5-8894804-3	chr5	8894666	8894866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1045.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	19.38	13.08	20.54	29.76	22.5	14.11	32.22	55.01	21.83	18.08	53.77	18.48
Merged-chr2-6259325-3	chr2	6259229	6259429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	MTC|LTR|ERVL-MaLR	-46335.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	39.98	16.85	44.5	31.77	22.09	20.07	31.22	47.1	31.86	18.08	42.21	26.31
Merged-chr2-24949682-3	chr2	24949581	24949781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	-96.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	135.27	114.95	135.2	113.82	146.87	151.46	138.18	104.27	176.82	144.1	175.37	107.14
Merged-chr18-32147623-3	chr18	32147499	32147699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8029.0	NM_001042767	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	21.4	18.61	16.54	22.12	29.46	32.93	29.9	39.45	17.11	36.15	38.69	15.04
Merged-chr13-63568010-3	chr13	63567903	63568103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001328514, intron 1 of 23)	CpG	-2268.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	46.84	61.88	64.46	55.5	75.28	95.01	84.7	75.28	101.88	107.95	125.12	72.36
Merged-chr8-47675199-3	chr8	47675096	47675296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-37.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	193.82	147.14	189.39	201.9	249.96	210.41	161.77	208.23	278.31	326.37	354.25	246.54
Merged-chr2-39004617-3	chr2	39004535	39004735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025592, intron 2 of 3)	intron (NM_025592, intron 2 of 3)	496.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	14.94	20.12	9.7	9.25	11.05	25.09	17.94	12.08	36.78	20.08	32.16	15.04
Merged-chr2-165885686-3	chr2	165885568	165885768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-830.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	18.98	13.58	17.11	18.5	36.41	24.77	32.55	26.69	28.32	20.59	33.67	12.53
Merged-chr18-20698274-3	chr18	20698173	20698373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	L1M4|LINE|L1	-33013.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	27.86	19.37	36.51	33.38	29.46	24.77	17.61	33.98	29.7	18.58	34.17	17.86
Merged-chr16-10418010-3	chr16	10417897	10418097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6059.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	56.13	69.67	83.29	85.27	55.64	72.12	48.83	55.29	47.01	32.64	66.33	33.83
Merged-chr12-71051296-3	chr12	71051180	71051380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 11 of 23)	B2_Mm2|SINE|B2	35313.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	48.46	30.94	18.83	19.31	61.37	57.7	49.83	51.17	43.47	36.65	41.2	24.75
Merged-chr5-30647922-3	chr5	30647792	30647992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175675)	promoter-TSS (NM_175675)	-44.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	41.99	28.67	38.79	26.55	35.59	41.71	31.89	42.81	59.01	57.74	71.86	43.86
Merged-chr4-132843208-3	chr4	132843115	132843315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146154)	promoter-TSS (NM_146154)	-46.0	NM_146154	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	25.84	28.42	22.82	30.57	30.68	43.9	14.62	19.07	30.68	35.65	41.71	20.68
Merged-chr13-21161373-3	chr13	21161276	21161476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18321.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	25.04	22.39	22.82	19.71	22.5	24.46	16.61	18.98	31.47	24.1	21.61	19.11
Merged-chr16-78577349-3	chr16	78577258	78577458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-670.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	65.01	83.76	98.12	91.3	124.37	176.54	100.98	173.83	208.88	214.9	222.1	102.12
Merged-chr14-54464831-3	chr14	54464738	54464938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022993, intron 1 of 6)	intron (NM_022993, intron 1 of 6)	691.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	48.05	31.19	19.4	11.26	29.46	54.88	19.27	18.42	46.42	47.7	25.12	17.23
Merged-chr16-57336908-3	chr16	57336812	57337012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-16365.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	130.02	129.03	120.37	155.65	115.78	153.65	96.99	151.85	162.46	141.09	169.34	84.58
Merged-chr14-66182768-3	chr14	66182661	66182861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	31063.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	29.07	28.67	30.23	21.32	22.09	50.49	18.27	34.74	40.32	16.07	39.7	31.64
Merged-chr8-82940141-3	chr8	82940036	82940236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	76780.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	21.0	17.36	25.1	54.3	69.55	56.44	85.7	107.8	29.7	26.61	49.75	23.49
Merged-chr17-26535495-3	chr17	26535409	26535609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26003.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	200.28	156.95	201.94	163.7	202.51	217.31	197.97	211.88	227.57	231.97	308.52	165.4
Merged-chr19-5648888-3	chr19	5648758	5648958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009045)	TTS (NM_009045)	11368.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	88.03	84.51	81.0	59.93	69.14	94.07	49.16	61.96	100.7	113.48	110.04	47.3
Merged-chr5-34187935-3	chr5	34187828	34188028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-218.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	279.83	356.16	378.21	384.91	353.87	421.13	383.33	356.3	393.77	408.21	547.71	286.33
Merged-chr17-45584252-3	chr17	45584154	45584354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199116)	TTS (NM_001199116)	8139.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	50.07	54.08	79.29	55.5	55.23	100.34	53.81	81.93	75.92	77.83	92.46	61.4
Merged-chr16-91405795-3	chr16	91405684	91405884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-451.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	72.68	62.63	54.76	21.72	58.91	89.05	24.25	37.93	112.11	89.37	73.86	36.97
Merged-chr17-29660588-3	chr17	29660491	29660691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-4.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	132.04	110.42	114.09	111.41	96.14	141.11	81.38	90.62	151.06	137.58	142.2	73.3
Merged-chr15-4734280-3	chr15	4734175	4734375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016704, intron 3 of 15)	intron (NM_016704, intron 3 of 15)	7065.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	59.76	49.3	45.64	65.96	78.96	69.93	103.64	102.06	68.64	66.78	104.01	36.34
Merged-chr13-41604326-3	chr13	41604210	41604410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	31.09	19.62	29.09	27.35	30.68	37.32	33.55	24.79	35.8	28.62	32.66	21.3
Merged-chr8-113643663-3	chr8	113643568	113643768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173015, exon 5 of 5)	3' UTR (NM_173015, exon 5 of 5)	455.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	44.01	44.02	35.94	29.76	31.5	42.65	32.88	20.58	41.7	47.2	52.76	19.42
Merged-chr8-41003232-3	chr8	41003114	41003314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	L1MB2|LINE|L1	-14254.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	29.48	36.22	56.48	70.38	49.5	50.8	44.84	88.93	100.7	83.35	123.11	41.04
Merged-chr14-31413911-3	chr14	31413812	31414012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	MLT1K|LTR|ERVL-MaLR	3765.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	52.9	31.94	58.19	53.09	58.91	63.97	57.13	80.64	46.22	48.7	64.82	43.86
Merged-chr4-133339432-3	chr4	133339331	133339531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-116.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	67.03	77.22	76.44	63.15	78.96	95.64	49.16	45.22	93.62	94.4	89.94	68.92
Merged-chr3-90248094-3	chr3	90247993	90248193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013901)	promoter-TSS (NM_013901)	-99.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	101.35	92.31	55.33	48.67	88.37	116.34	69.09	60.28	121.36	134.56	89.94	71.42
Merged-chr16-92410331-3	chr16	92410251	92410451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-10273.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	41.19	35.47	40.5	37.81	58.91	58.01	55.8	74.16	41.7	32.64	59.8	23.49
Merged-chr1-9859158-3	chr1	9859060	9859260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037759, intron 1 of 16)	intron (NM_001037759, intron 1 of 16)	10879.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	39.57	53.07	69.6	61.94	54.0	51.74	41.19	59.75	67.27	35.15	62.31	31.01
Merged-chr8-106060019-3	chr8	106059920	106060120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010901, intron 1 of 9)	CpG	417.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	15.75	30.94	19.4	18.9	15.14	23.83	15.28	15.2	17.31	32.64	20.6	14.72
Merged-chr2-158306355-3	chr2	158306249	158306449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-144.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	52.09	46.28	32.52	49.47	18.41	29.48	16.61	18.22	56.84	52.22	81.4	27.88
Merged-chr6-115995098-3	chr6	115995049	115995249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-144.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	43.21	57.35	41.64	56.71	58.91	53.62	59.46	36.03	45.43	82.85	69.85	39.78
Merged-chr8-120736299-3	chr8	120736202	120736402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008320)	promoter-TSS (NM_008320)	-56.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	83.18	73.7	77.01	98.94	99.82	100.97	65.44	91.71	130.4	99.42	155.27	84.27
Merged-chr13-34254902-3	chr13	34254802	34255002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90280.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	110.24	99.61	119.23	112.62	117.82	143.3	105.63	121.51	114.67	93.89	133.16	55.76
Merged-chr3-95990575-3	chr3	95990464	95990664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023320, intron 5 of 5)	intron (NM_023320, intron 5 of 5)	5054.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	124.37	84.01	139.76	132.73	133.78	137.03	106.96	135.45	118.8	139.08	143.71	81.76
Merged-chr2-120578485-3	chr2	120578393	120578593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	10822.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	60.57	34.96	31.38	55.91	54.0	58.64	36.54	47.13	69.43	60.75	74.37	44.48
Merged-chrX-160138033-2	chrX	160137941	160138141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008810, intron 1 of 10)	CpG	389.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	33.52	37.98	26.81	54.7	41.32	50.17	73.08	42.53	36.19	35.15	38.19	32.27
Merged-chr1-55052685-3	chr1	55052584	55052784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026424)	promoter-TSS (NM_026424)	-86.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	283.46	271.65	296.64	281.94	346.51	411.41	290.32	303.39	412.85	419.76	499.97	247.79
Merged-chr7-4073415-3	chr7	4073311	4073511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033568)	TTS (NR_033568)	-10207.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	23.42	22.39	31.38	37.0	33.14	22.58	18.6	34.07	28.52	25.61	29.14	22.87
Merged-chr7-133638294-1	chr7	133638194	133638394	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178115, intron 1 of 24)	CpG	619.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	4.04	7.04	6.85	3.62	1.23	5.64	3.65	5.5	4.33	8.03	6.53	5.64
Merged-chr10-128377115-4	chr10	128377000	128377200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-24.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	27.05	29.18	21.11	17.7	32.73	39.82	20.26	25.09	39.53	42.68	60.3	22.87
Merged-chr17-46835626-3	chr17	46835519	46835719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4206.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	27.46	19.12	25.1	18.5	26.18	29.48	24.91	21.59	31.67	23.1	39.7	11.9
Merged-chr8-22060625-3	chr8	22060522	22060722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	-99.0	NR_040650	207958.0	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	169.59	180.35	185.97	201.9	212.32	249.6	201.96	278.44	261.2	287.71	411.53	175.43
Merged-chr9-40330780-3	chr9	40330635	40330835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357618, intron 3 of 20)	intron (NM_001357618, intron 3 of 20)	-2737.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	17.77	13.58	16.54	26.95	24.14	26.65	14.95	20.33	18.69	24.1	35.17	15.04
Merged-chr13-44660000-3	chr13	44659918	44660118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70756.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	56.94	70.43	118.08	52.29	115.37	157.73	79.39	82.54	111.33	125.53	112.05	72.99
Merged-chr17-87265961-3	chr17	87265869	87266069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-22.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	102.97	112.68	100.4	86.47	96.55	100.66	104.3	94.91	121.36	122.01	179.89	87.4
Merged-chr8-14233208-3	chr8	14233085	14233285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 2 of 15)	intron (NM_172910, intron 2 of 15)	137310.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	21.0	14.59	38.79	35.39	13.5	20.38	14.28	24.08	22.82	9.04	32.66	18.8
Merged-chr16-50753261-3	chr16	50753159	50753359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20486.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	21.8	13.33	30.8	18.9	35.18	49.54	31.56	36.03	37.96	28.12	41.2	19.11
Merged-chr9-124143816-3	chr9	124143706	124143906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22263.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	47.24	32.7	49.06	55.91	40.09	49.23	20.26	40.79	53.7	61.26	54.27	36.97
Merged-chr13-34050691-3	chr13	34050593	34050793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	13052.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	39.17	31.69	47.92	36.2	40.09	59.89	40.19	51.79	42.88	38.66	50.75	22.56
Merged-chr6-34675089-3	chr6	34674992	34675192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 2 of 13)	ORR1E|LTR|ERVL-MaLR	-34352.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	31.9	23.64	35.37	26.95	55.64	65.85	31.56	58.12	63.53	86.86	85.42	48.56
Merged-chr10-20773356-3	chr10	20773245	20773445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48267.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	29.07	23.39	30.8	30.16	25.77	16.93	17.94	43.57	44.45	31.13	41.2	46.68
Merged-chr11-45718721-1	chr11	45718621	45718821	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89362.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	1.62	6.29	4.56	8.45	5.73	10.98	3.65	13.32	3.54	5.02	4.02	2.82
Merged-chr5-108461261-3	chr5	108461145	108461345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172716)	promoter-TSS (NM_172716)	-87.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	39.17	47.04	38.22	41.02	95.32	79.96	41.85	58.46	76.91	73.31	96.98	43.54
Merged-chr19-57610070-3	chr19	57609997	57610197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-937.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	123.16	77.97	94.7	82.05	79.78	99.4	78.72	75.67	93.23	100.92	86.93	56.39
Merged-chr12-36039602-3	chr12	36039513	36039713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	2865.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	98.12	69.17	111.24	121.87	109.64	116.34	90.68	139.43	123.13	134.06	131.15	77.69
Merged-chr11-5785895-3	chr11	5785800	5786000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2583.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	27.86	24.9	49.06	31.37	45.82	60.83	49.83	69.17	47.8	46.19	55.78	43.86
Merged-chr7-101908495-3	chr7	101908383	101908583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-2124.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	25.84	26.91	23.96	20.91	23.73	22.89	27.24	41.64	25.57	27.62	45.73	13.47
Merged-chr15-41789146-8	chr15	41789104	41789304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	170.0	NM_001130165	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	19.38	25.91	21.11	15.28	20.86	21.64	18.93	19.49	23.21	35.15	20.6	22.87
Merged-chr17-33919596-3	chr17	33919495	33919695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020625)	TTS (NM_020625)	117.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	63.8	85.77	62.75	35.39	54.41	90.62	33.55	51.17	94.8	76.82	46.23	61.09
Merged-chr17-25115998-3	chr17	25115916	25116116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163661)	promoter-TSS (NM_001163661)	-49.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	43.61	32.95	31.38	30.16	122.32	174.35	73.74	83.47	39.34	64.77	47.23	36.03
Merged-chr14-30717017-3	chr14	30716921	30717121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166532, intron 1 of 20)	intron (NM_001166532, intron 1 of 20)	1406.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	46.03	24.15	54.76	33.78	58.91	52.68	76.07	59.5	66.87	80.34	66.83	31.64
Merged-chr12-51678959-3	chr12	51678864	51679064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	RSINE1|SINE|B4	-12002.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	18.57	21.88	31.38	17.29	35.18	32.93	19.93	35.89	41.3	23.1	37.18	14.41
Merged-chr15-82906203-3	chr15	82906094	82906294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045068)	TTS (NR_045068)	5940.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	65.01	54.08	80.43	63.95	67.5	71.81	53.15	71.94	59.4	29.12	71.86	34.15
Merged-chr1-43321658-3	chr1	43321567	43321767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124084.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	113.47	96.59	110.67	140.77	78.14	91.25	82.71	98.69	108.57	111.97	159.29	57.01
Merged-chr11-100527990-3	chr11	100527889	100528089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199296)	promoter-TSS (NM_001199296)	11.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	105.79	126.77	118.65	91.7	136.64	132.33	81.71	93.39	153.81	137.07	175.87	82.08
Merged-chr18-39801315-3	chr18	39801207	39801407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27810.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	57.34	65.15	74.73	65.16	46.23	57.07	54.81	66.36	72.77	71.8	90.45	50.44
Merged-chr8-126845788-3	chr8	126845695	126845895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3225.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	153.04	139.6	194.53	201.5	188.19	246.78	218.9	238.66	247.43	208.88	302.49	158.2
Merged-chr7-27258712-3	chr7	27258617	27258817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010950)	promoter-TSS (NM_010950)	-44.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	64.61	48.54	56.48	79.23	71.59	92.82	54.14	73.23	99.13	105.44	105.52	42.92
Merged-chr3-52268346-3	chr3	52268221	52268421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-16.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	52.09	42.76	49.06	39.82	77.73	70.24	37.2	55.46	88.9	99.92	119.59	62.97
Merged-chr15-60824976-3	chr15	60824884	60825084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	96.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	53.3	31.19	34.8	43.44	56.05	59.89	35.54	47.44	43.66	54.73	60.8	26.63
Merged-chr7-25395296-3	chr7	25395190	25395390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	577.0	NR_015569	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	27.05	26.66	44.5	27.75	31.91	36.69	25.58	32.94	47.21	27.62	41.71	25.69
Merged-chr10-128695802-1	chr10	128695702	128695902	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	466.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	22.21	30.94	25.67	21.32	27.82	41.71	22.26	23.94	29.31	27.62	29.14	18.48
Merged-chr4-141558726-3	chr4	141558582	141558782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12520.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	21.0	14.59	14.83	10.86	30.68	28.54	14.62	14.94	31.86	32.13	20.1	23.49
Merged-chr5-110448605-3	chr5	110448491	110448691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-88.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	116.7	86.27	132.92	99.34	133.37	135.78	96.33	122.08	149.09	161.18	222.1	91.79
Merged-chr2-153632752-3	chr2	153632653	153632853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	28.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	46.44	30.43	42.21	45.85	20.46	24.77	18.93	28.15	47.4	46.19	43.72	40.41
Merged-chr3-62507013-3	chr3	62506905	62507105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028136)	promoter-TSS (NM_028136)	-17.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	84.39	66.15	53.62	73.6	87.55	82.16	63.78	99.42	99.13	51.72	128.13	50.12
Merged-chr6-82714421-3	chr6	82714313	82714513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60041.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	23.42	24.15	19.97	19.71	19.23	37.32	14.62	20.24	33.44	46.19	39.19	20.05
Merged-chr1-168432438-3	chr1	168432318	168432518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-249.0	NM_008783	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	141.33	138.84	140.9	164.5	226.23	237.69	184.69	246.2	244.48	209.38	329.13	172.61
Merged-chr15-58888997-3	chr15	58888912	58889112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175226)	promoter-TSS (NM_175226)	-217.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	96.51	113.69	88.99	86.47	116.59	136.09	95.33	78.48	136.5	152.64	150.74	77.06
Merged-chrX-74023914-3	chrX	74023815	74024015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008363)	promoter-TSS (NM_008363)	3.0	NM_001177975	16179.0	Mm.38241	NM_008363	ENSMUSG00000031392	Irak1	AA408924|IRAK|IRAK-1|IRAK1-S|IRAK1b|Il1rak|Plpk|mPLK	interleukin-1 receptor-associated kinase 1	protein-coding	52.49	56.34	49.63	52.69	62.18	61.15	48.16	80.94	71.2	81.34	115.57	48.87
Merged-chr11-102430379-3	chr11	102430286	102430486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008175)	promoter-TSS (NM_008175)	64.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	151.83	140.1	108.96	112.62	168.14	199.12	85.04	120.65	185.08	204.36	144.21	85.52
Merged-chr7-101549000-3	chr7	101548898	101549098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6804.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	59.36	43.01	50.77	46.25	51.14	81.84	73.41	71.47	83.79	74.81	98.49	57.95
Merged-chr5-115635693-3	chr5	115635590	115635790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	3703.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	74.3	39.74	57.62	69.18	69.14	66.16	48.16	74.05	38.75	54.23	73.86	26.31
Merged-chr5-103754030-3	chr5	103753916	103754116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080798)	promoter-TSS (NM_001080798)	-146.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	58.15	78.73	34.23	92.91	44.59	76.83	74.74	55.51	73.17	113.98	122.1	51.06
Merged-chr5-45450401-3	chr5	45450314	45450514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-185.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	324.65	320.95	325.73	376.46	387.01	425.2	359.74	369.0	488.38	555.83	575.85	314.21
Merged-chr2-121140532-3	chr2	121140444	121140644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177846, exon 1 of 1)	exon (NM_177846, exon 1 of 1)	116.0	NM_001290812	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	42.8	59.36	65.03	66.36	74.46	88.11	79.06	58.79	69.82	106.45	61.3	64.22
Merged-chr14-27428780-3	chr14	27428667	27428867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114879)	promoter-TSS (NM_001114879)	-67.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	56.13	66.91	53.05	75.61	88.78	109.44	64.11	74.55	145.16	112.97	155.27	83.33
Merged-chr1-9545328-3	chr1	9545224	9545424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-84.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	240.26	211.03	265.83	280.33	328.51	333.01	238.83	378.0	331.22	306.79	421.58	211.45
Merged-chr19-6291327-3	chr19	6291254	6291454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	14458.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	71.07	67.91	76.44	30.97	72.0	106.61	71.08	28.23	55.86	52.22	68.34	23.81
Merged-chr16-22654559-3	chr16	22654474	22654674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	2657.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	48.46	38.48	51.34	69.18	49.91	40.76	38.2	56.61	47.99	35.65	51.25	31.01
Merged-chr4-132533635-3	chr4	132533489	132533689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1825.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	20.59	28.17	29.09	26.95	32.73	40.76	17.61	38.86	42.68	32.13	55.27	26.31
Merged-chr8-35666011-2	chr8	35665916	35666116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-76996.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	16.56	26.91	40.5	27.35	51.96	58.32	50.82	72.06	4.92	5.02	6.03	1.88
Merged-chr2-50519102-4	chr2	50519047	50519247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	164122.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	25.44	28.17	29.66	26.14	29.05	23.2	35.21	27.64	43.47	33.64	47.23	31.95
Merged-chr15-81105060-3	chr15	81104959	81105159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153049)	promoter-TSS (NM_153049)	-12.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	106.6	83.51	95.27	86.07	99.82	118.22	67.76	95.36	95.39	101.93	129.14	47.93
Merged-chr13-52035969-3	chr13	52035882	52036082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60759.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	47.24	25.66	97.55	73.6	66.68	32.93	62.12	82.71	55.47	44.69	70.85	33.21
Merged-chr4-155601580-5	chr4	155601502	155601702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177186, exon 1 of 9)	5' UTR (NM_177186, exon 1 of 9)	186.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	43.61	30.94	38.22	47.06	36.0	56.76	39.53	43.4	69.04	100.92	73.36	56.07
Merged-chr7-16273479-3	chr7	16273377	16273577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001136471)	TTS (NM_001136471)	215.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	95.3	71.43	95.27	85.67	67.09	80.9	58.79	86.44	74.15	79.33	95.47	56.39
Merged-chr6-51469404-3	chr6	51469322	51469522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016806, intron 1 of 10)	CpG	472.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	37.15	41.0	38.22	38.21	18.82	38.26	31.56	31.35	50.16	56.74	40.7	26.63
Merged-chr9-21015357-3	chr9	21015288	21015488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	-552.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	72.68	65.65	88.42	82.45	67.5	101.6	62.78	88.88	100.9	104.44	120.09	67.04
Merged-chr17-56831204-3	chr17	56831110	56831310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027787)	promoter-TSS (NM_027787)	-202.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	210.78	199.71	221.91	189.84	279.42	307.61	199.97	247.35	270.05	256.58	350.73	147.24
Merged-chr4-40846783-3	chr4	40846701	40846901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3337.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	36.34	51.56	38.22	26.55	66.68	74.0	45.18	50.64	65.89	75.82	86.93	55.45
Merged-chr10-91138474-3	chr10	91138380	91138580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-14517.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	41.59	51.31	42.21	46.66	69.14	72.75	45.84	66.45	97.75	87.37	147.23	53.88
Merged-chr10-81357482-3	chr10	81357413	81357613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	22.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	49.67	53.83	52.48	60.33	70.37	66.16	50.49	62.44	82.81	74.31	91.95	32.58
Merged-chr10-62651344-3	chr10	62651232	62651432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-114.0	NM_053183	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	176.46	161.48	209.93	191.45	198.01	252.11	179.7	200.55	235.63	300.76	331.14	120.29
Merged-chr8-120112802-3	chr8	120112688	120112888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-1364.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	131.64	126.02	123.22	133.13	164.87	159.29	133.53	187.88	155.78	139.08	212.55	133.45
Merged-chr11-53764034-1	chr11	53763934	53764134	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-380.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	124.37	129.54	146.61	94.11	119.87	196.92	88.36	104.89	156.56	158.67	163.81	100.56
Merged-chr11-71251501-2	chr11	71251409	71251609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027858, intron 8 of 12)	RMER21A|LTR|ERV1	-20776.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	123.16	145.13	166.57	181.79	0.0	0.0	0.0	0.0	148.3	166.7	191.45	99.93
Merged-chr11-14443553-1	chr11	14443453	14443653	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10-int|LTR|ERVK	155672.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0.4	0.0	0.0	0.0	0.0	0.0	0.0	1.43	43.47	30.13	39.7	20.99
Merged-chr15-58214992-3	chr15	58214882	58215082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-90.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	31.09	35.97	41.07	32.98	43.77	43.27	38.2	62.5	42.29	47.7	58.29	60.46
Merged-chr16-20496809-3	chr16	20496705	20496905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2012.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	27.86	16.6	18.25	16.09	18.0	25.71	11.63	28.09	34.81	17.07	29.14	19.11
Merged-chr3-127762646-3	chr3	127762539	127762739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17888.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	27.05	29.18	56.48	40.22	49.09	36.37	19.27	42.76	18.49	9.04	20.6	17.86
Merged-chr16-11420455-3	chr16	11420374	11420574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 10 of 20)	Tigger17|DNA|TcMar-Tigger	14826.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	21.4	18.86	39.93	37.4	47.05	34.18	41.85	51.0	31.86	37.16	39.7	29.76
Merged-chr10-24149253-3	chr10	24149186	24149386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-3.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	137.29	120.73	171.71	175.36	174.28	155.53	130.88	162.17	189.02	184.77	245.71	109.02
Merged-chr7-80387960-3	chr7	80387852	80388052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-6.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	44.42	54.58	69.03	58.32	68.73	63.97	49.49	65.58	53.5	54.23	68.34	54.82
Merged-chr8-18846303-3	chr8	18846201	18846401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	22.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	175.65	143.87	139.76	172.14	142.78	182.19	206.94	171.59	140.63	145.61	216.07	125.62
Merged-chr5-96917758-3	chr5	96917651	96917851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	36.34	17.61	32.52	29.76	58.5	36.37	49.49	47.41	49.17	37.66	60.8	40.41
Merged-chr3-107781456-3	chr3	107781356	107781556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20987.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	32.71	31.44	39.36	65.56	33.55	36.37	27.9	38.64	33.83	30.63	61.3	30.7
Merged-chr1-5083194-3	chr1	5083084	5083284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310442)	promoter-TSS (NM_001310442)	98.0	NM_001310442	108664.0	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	59.76	106.14	94.13	92.91	83.05	100.66	128.22	102.08	79.27	91.38	112.56	80.51
Merged-chr5-64961161-5	chr5	64961057	64961257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1061.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	49.26	46.78	58.76	47.46	46.23	42.02	60.79	48.87	75.92	94.4	79.39	68.29
Merged-chr9-5308749-3	chr9	5308642	5308842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-107.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	186.15	143.12	104.96	134.74	161.6	163.69	109.95	147.31	163.64	168.21	190.94	84.9
Merged-chr12-112829544-3	chr12	112829443	112829643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359292)	promoter-TSS (NM_001359292)	-22.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	182.11	201.22	184.83	197.48	206.19	246.15	196.98	202.85	249.99	263.61	295.96	158.83
Merged-chr3-129725259-3	chr3	129725166	129725366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-180.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	73.09	102.37	77.58	91.7	124.37	115.08	138.52	110.64	92.05	124.52	117.58	84.9
Merged-chr6-82994427-3	chr6	82994224	82994424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	(CA)n|Simple_repeat|Simple_repeat	39147.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	19.79	15.59	13.12	14.88	21.27	21.64	10.96	19.49	41.89	38.16	32.66	23.49
Merged-chr17-35993846-3	chr17	35993751	35993951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-653.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	27.05	22.39	27.38	26.14	25.36	37.32	15.61	31.91	43.47	50.71	40.7	21.93
Merged-chr16-90284541-3	chr16	90284437	90284637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-34.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	138.1	134.32	152.31	165.71	144.0	169.02	127.89	170.69	175.45	176.24	255.26	129.07
Merged-chr4-12501287-3	chr4	12501174	12501374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-329259.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	15.34	20.88	35.94	28.15	51.96	41.39	47.5	78.5	70.22	58.24	56.28	31.33
Merged-chr14-26638895-3	chr14	26638805	26639005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	771.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	44.82	57.35	59.9	39.42	40.5	66.16	36.21	35.16	63.14	60.75	86.43	40.1
Merged-chr6-108783048-3	chr6	108782930	108783130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-29.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	72.68	80.49	86.14	91.7	95.32	103.17	78.06	78.65	149.48	148.12	182.4	86.77
Merged-chr4-109118081-3	chr4	109117990	109118190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134791)	promoter-TSS (NM_001134791)	-54.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	73.09	69.92	70.74	56.31	98.18	103.79	56.14	76.57	103.85	83.85	102.0	52.94
Merged-chr1-23380204-3	chr1	23380065	23380265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3010.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	50.88	40.24	70.74	68.78	63.41	55.5	48.5	90.67	55.07	47.2	68.34	51.38
Merged-chr6-26220018-3	chr6	26219885	26220085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	288559.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	15.34	18.86	24.53	22.12	25.36	19.76	26.91	14.66	32.06	20.08	35.68	13.47
Merged-chr9-88482645-3	chr9	88482548	88482748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019796)	promoter-TSS (NM_019796)	-251.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	184.53	204.24	220.77	215.98	216.01	241.76	196.98	229.23	264.74	298.25	359.78	195.48
Merged-chr8-70904694-3	chr8	70904597	70904797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1277.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	92.87	70.68	90.13	92.1	90.0	75.88	63.44	94.12	84.58	79.83	101.0	59.83
Merged-chr3-95651396-3	chr3	95651319	95651519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7302.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	25.04	14.59	22.25	22.52	37.23	37.0	59.79	50.8	37.57	29.62	42.21	25.69
Merged-chrX-8132599-3	chrX	8132489	8132689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026137, exon 1 of 9)	5' UTR (NM_026137, exon 1 of 9)	269.0	NM_001290783	73447.0	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	21.4	22.64	26.81	18.5	43.36	33.87	18.27	17.33	48.98	47.2	43.21	20.99
Merged-chr10-67703277-3	chr10	67703184	67703384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131325.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	23.02	27.67	33.09	26.95	34.36	42.96	16.94	41.89	30.68	27.62	43.21	28.19
Merged-chr4-101293231-3	chr4	101293123	101293323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-27941.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	46.44	44.77	25.67	28.96	36.0	56.76	16.28	40.54	74.35	68.29	69.85	38.85
Merged-chr19-6910502-1	chr19	6910402	6910602	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-396.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	20.19	16.6	23.96	19.31	21.27	34.18	16.28	12.03	26.75	26.11	29.65	19.74
Merged-chr13-25791493-3	chr13	25791386	25791586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174830.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	41.19	58.35	64.46	77.22	67.91	65.85	70.75	96.25	80.84	77.83	103.51	53.88
Merged-chr5-35584418-3	chr5	35584323	35584523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030721, intron 2 of 18)	(GAA)n|Simple_repeat|Simple_repeat	1389.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	38.36	37.98	38.79	38.61	42.55	61.77	27.57	27.03	48.19	53.73	44.22	44.8
Merged-chr12-3781628-3	chr12	3781525	3781725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-25355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	70.26	52.57	88.42	59.93	81.0	88.74	67.76	81.17	105.03	81.34	105.02	53.88
Merged-chr5-103614381-4	chr5	103614283	103614483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029415, intron 3 of 5)	intron (NM_029415, intron 3 of 5)	15020.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	18.98	25.91	24.53	26.14	26.59	20.07	26.57	15.39	17.31	28.62	19.6	18.17
Merged-chr2-129315997-3	chr2	129315897	129316097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6025.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	37.15	35.72	32.52	36.2	36.0	29.48	32.55	40.71	50.35	66.78	67.33	40.41
Merged-chr17-8225383-3	chr17	8225266	8225466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10677.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	28.67	36.97	41.64	30.57	36.0	31.67	19.93	20.38	23.01	27.11	23.11	16.92
Merged-chr11-119389995-3	chr11	119389876	119390076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-496.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	53.3	42.51	54.19	31.37	72.0	88.43	42.85	47.58	76.51	67.28	73.86	36.03
Merged-chr11-72607840-3	chr11	72607736	72607936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025985, intron 1 of 5)	CpG	575.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	28.67	25.15	19.4	21.72	24.96	28.22	28.57	16.23	49.17	35.15	45.22	28.51
Merged-chr3-95434310-3	chr3	95434199	95434399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-91.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	153.44	133.56	146.61	143.18	164.46	177.48	93.67	148.71	192.56	236.99	292.95	124.99
Merged-chr15-25550862-3	chr15	25550774	25550974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71676.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	114.27	118.22	118.65	125.89	52.37	96.58	75.4	82.4	89.1	77.83	74.87	34.77
Merged-chr6-122633505-3	chr6	122633405	122633605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	7081.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	24.23	25.66	25.1	30.16	29.46	48.6	32.22	28.63	24.59	39.16	42.71	44.17
Merged-chr4-59036839-5	chr4	59036753	59036953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1697.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	11.71	13.08	14.26	21.72	15.96	13.48	13.62	14.64	17.11	21.59	19.09	12.84
Merged-chr8-122476136-3	chr8	122476034	122476234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	-9.0	NM_153775	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	96.91	95.83	112.38	88.08	97.78	129.51	66.1	70.68	118.6	134.56	91.95	77.06
Merged-chr2-27773032-1	chr2	27772932	27773132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER77|LTR|ERVL	62449.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	14.13	13.33	2.28	4.83	4.09	5.64	2.66	1.68	5.31	11.05	2.01	2.19
Merged-chr6-100163329-3	chr6	100163232	100163432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124026.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	100.55	100.61	164.29	116.64	123.14	93.13	123.57	189.51	103.65	91.89	126.12	67.98
Merged-chr5-146221032-3	chr5	146220929	146221129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-58.0	NM_001256086	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	63.8	69.67	82.15	70.38	84.28	100.34	47.83	82.79	124.9	116.49	149.74	65.47
Merged-chr19-18671207-2	chr19	18671112	18671312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026120, intron 1 of 7)	CpG	432.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	32.3	27.67	26.81	28.15	34.77	22.58	25.58	20.72	37.96	25.11	29.65	24.12
Merged-chr5-36549411-3	chr5	36549331	36549531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-18808.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	67.84	49.05	93.55	82.05	50.73	53.93	53.81	95.22	41.89	37.66	56.78	40.72
Merged-chr4-53414184-3	chr4	53414078	53414278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26235.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	33.92	27.17	38.79	24.13	65.46	74.63	31.22	49.12	46.42	43.68	72.86	32.27
Merged-chr13-58552153-3	chr13	58552058	58552258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58719.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	88.03	79.73	106.1	102.96	67.91	98.15	48.5	65.38	127.26	94.4	95.97	65.47
Merged-chr13-37347954-3	chr13	37347851	37348051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2606.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	29.88	16.35	39.93	27.75	43.36	18.5	23.25	30.34	30.49	25.61	34.17	20.05
Merged-chrUn_JH584304-10458-1	chrUn_JH584304	10358	10558	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49231.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	334.37	268.12	442.69	208.32
Merged-chr4-95770718-3	chr4	95770619	95770819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191298.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	42.8	42.26	46.78	55.91	38.46	39.51	34.21	37.96	56.25	51.21	57.79	22.56
Merged-chr9-120805007-1	chr9	120804907	120805107	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110243.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.25	7.04	7.42	3.22	4.09	2.82	11.96	8.86	1.18	3.51	0.0	0.0
Merged-chr1-64928727-3	chr1	64928633	64928833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	28091.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	27.05	27.67	27.95	42.23	51.55	37.32	32.22	39.42	51.14	27.62	79.89	44.48
Merged-chr1-166409826-3	chr1	166409721	166409921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142948)	promoter-TSS (NM_001142948)	7.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	62.99	58.86	62.18	53.89	68.32	73.69	61.45	64.23	79.27	71.8	94.97	53.57
Merged-chr10-6417884-2	chr10	6417783	6417983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-340710.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	31.9	27.17	38.79	46.66	40.91	26.03	40.52	19.29	0.0	0.0	2.51	0.63
Merged-chr11-43353844-3	chr11	43353757	43353957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20604.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	77.12	77.47	83.86	96.53	83.87	103.17	55.47	89.16	125.68	120.51	131.65	51.38
Merged-chr3-65958316-3	chr3	65958315	65958515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	-166.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	130.02	140.6	83.86	98.14	128.87	199.43	131.87	93.31	138.27	174.73	202.5	107.45
Merged-chr1-39525963-3	chr1	39525870	39526070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9731.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	44.01	39.49	77.58	76.82	69.96	77.77	61.12	106.74	57.04	58.75	72.36	54.51
Merged-chr8-83768757-2	chr8	83768652	83768852	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-27441.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.02	1.76	0.0	2.01	31.5	27.28	28.57	35.78	29.9	13.05	34.67	23.18
Merged-chr9-111118131-3	chr9	111118049	111118249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164838)	promoter-TSS (NM_001164838)	38.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	66.22	61.62	50.77	53.89	45.82	89.37	49.49	49.32	69.63	56.24	90.95	38.22
Merged-chr10-127591158-3	chr10	127591045	127591245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 11 of 88)	intron (NM_008512, intron 11 of 88)	30003.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	150.21	107.15	239.59	187.83	210.28	254.62	201.96	241.57	167.97	163.69	246.72	144.1
Merged-chr6-28929349-3	chr6	28929262	28929462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93257.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	35.94	2.52	34.8	8.85	34.36	90.94	35.21	23.19	1.57	0.0	34.17	19.11
Merged-chr11-95844935-3	chr11	95844815	95845015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023121, intron 2 of 3)	intron (NM_023121, intron 2 of 3)	1670.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	22.21	21.63	25.67	18.1	27.41	20.7	33.55	20.1	22.42	20.08	30.65	17.54
Merged-chr7-133637612-3	chr7	133637525	133637725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-50.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	146.98	146.14	172.28	178.98	187.78	214.17	156.78	159.65	236.42	234.48	289.93	154.75
Merged-chr11-96977387-2	chr11	96977288	96977488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	CpG	300.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	33.52	32.45	34.8	26.95	33.14	37.63	38.2	33.28	59.4	69.79	68.84	48.56
Merged-chr2-31771381-3	chr2	31771281	31771481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11208.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	67.03	57.35	77.58	63.15	92.46	81.53	91.68	91.46	64.51	66.28	76.38	46.99
Merged-chr1-105971911-4	chr1	105971820	105972020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18362.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	30.28	41.25	17.11	23.33	25.77	37.63	25.24	28.71	33.44	48.2	29.14	18.48
Merged-chr7-28179990-3	chr7	28179885	28180085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	-331.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	107.41	96.59	98.69	107.39	131.32	122.61	82.38	108.25	153.61	143.6	204.51	70.48
Merged-chr15-36793676-3	chr15	36793559	36793759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	879.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	143.35	161.73	114.66	142.38	150.55	201.31	111.61	142.54	224.03	262.6	312.54	154.75
Merged-chr18-52563804-3	chr18	52563698	52563898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33931.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	98.12	86.02	83.29	69.98	130.91	159.29	97.66	119.86	106.8	129.04	143.21	70.17
Merged-chr7-63858677-3	chr7	63858578	63858778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58179.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	31.9	22.89	19.4	28.96	28.23	47.04	25.24	55.6	50.94	36.15	57.79	28.82
Merged-chr5-96164210-3	chr5	96164106	96164306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2216.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	47.24	21.63	45.07	35.8	53.59	47.98	47.5	74.5	59.2	47.2	51.76	45.11
Merged-chr10-17788079-3	chr10	17787985	17788185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8134.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	26.25	16.85	18.25	18.1	58.5	75.26	43.85	26.75	101.49	108.45	60.3	31.01
Merged-chr10-111298625-3	chr10	111298545	111298745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-34.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	90.05	100.36	125.5	105.78	138.28	121.67	92.01	170.36	183.31	146.11	250.74	124.99
Merged-chr11-109369348-3	chr11	109369252	109369452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-5698.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	114.27	109.16	178.55	135.94	146.05	165.88	132.54	163.35	170.33	146.61	183.91	104.94
Merged-chr17-33981303-1	chr17	33981203	33981403	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-189.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	172.69	212.89	152.75	119.67
Merged-chr19-34527527-3	chr19	34527426	34527626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-52.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	141.33	138.84	171.71	196.27	171.41	186.26	148.15	176.19	200.03	148.62	236.17	116.22
Merged-chr1-55419140-3	chr1	55419049	55419249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	13203.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	41.99	35.97	66.74	67.17	32.32	37.94	43.85	64.18	46.62	32.13	73.86	42.92
Merged-chr7-66356391-3	chr7	66356296	66356496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	B1F1|SINE|Alu	25328.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	41.59	33.96	25.67	43.04	42.14	55.82	30.23	37.63	49.57	47.7	48.24	22.56
Merged-chr11-107318754-3	chr11	107318622	107318822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 4 of 9)	B1_Mur1|SINE|Alu	-129341.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	22.21	27.67	29.09	42.63	42.96	25.71	54.14	37.01	81.04	57.24	106.02	50.12
Merged-chr1-171272275-3	chr1	171272184	171272384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020579, intron 3 of 7)	intron (NM_020579, intron 3 of 7)	1956.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	40.38	38.23	51.34	59.12	42.96	47.98	30.56	63.11	50.75	41.17	40.7	32.58
Merged-chr2-26389302-3	chr2	26389202	26389402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173180)	promoter-TSS (NM_173180)	14.0	NM_001085407	68112.0	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	35.94	27.42	32.52	41.43	46.23	39.51	28.9	44.61	50.16	34.14	32.16	28.19
Merged-chr16-38758702-3	chr16	38758599	38758799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	16440.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	92.07	92.31	131.21	121.87	92.46	79.33	69.09	130.6	98.93	82.85	142.2	77.69
Merged-chr15-75981591-1	chr15	75981491	75981691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146059, exon 2 of 2)	exon (NM_146059, exon 2 of 2)	694.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	20.59	11.82	18.25	17.29	11.86	17.25	14.62	13.46	8.46	9.54	18.59	13.78
Merged-chr4-41124396-3	chr4	41124296	41124496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139236)	promoter-TSS (NM_139236)	-57.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	148.6	145.63	168.28	196.27	172.23	190.34	117.26	173.52	207.31	201.85	259.28	129.38
Merged-chr1-185332138-3	chr1	185332042	185332242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-17.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	88.84	86.53	131.21	99.34	108.82	120.41	80.39	117.22	141.22	128.04	154.76	87.09
Merged-chr6-73248519-3	chr6	73248415	73248615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	10.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	54.51	61.12	55.9	53.89	75.68	80.9	90.35	64.26	69.23	61.26	56.28	47.62
Merged-chr5-114772066-3	chr5	114771967	114772167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1424.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	21.4	15.09	31.38	29.36	38.86	27.28	16.28	22.91	25.18	27.11	29.65	13.47
Merged-chr1-59912911-3	chr1	59912815	59913015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037725)	promoter-TSS (NM_001037725)	-91.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	145.77	136.08	146.04	128.7	123.55	130.76	85.37	131.61	186.46	163.69	241.19	115.6
Merged-chr15-95772498-3	chr15	95772394	95772594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18349.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	35.94	31.19	34.23	32.58	36.82	29.79	31.89	36.25	30.29	25.11	41.2	28.51
Merged-chr13-99337686-3	chr13	99337605	99337805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 3 of 9)	MIRb|SINE|MIR	6973.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	45.23	41.25	64.46	70.79	54.82	55.82	63.78	83.66	94.8	71.8	119.09	85.84
Merged-chr4-153877157-3	chr4	153877025	153877225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	73351.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	29.07	22.13	22.82	16.09	49.09	35.12	32.88	36.79	16.13	15.57	23.62	14.72
Merged-chr15-101224195-3	chr15	101224105	101224305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	-2.0	NM_019518	56149.0	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	47.24	41.0	23.96	32.98	44.18	37.32	32.55	28.01	51.34	37.16	86.43	18.8
Merged-chr7-45367246-4	chr7	45367210	45367410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029741)	promoter-TSS (NM_029741)	77.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	38.76	48.04	49.06	56.31	56.46	67.42	64.77	40.88	55.27	77.83	63.82	42.92
Merged-chr2-11441984-3	chr2	11441882	11442082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43482.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	103.78	78.98	86.71	96.93	85.91	129.51	113.27	124.32	145.94	113.98	132.66	104.94
Merged-chr4-134595250-3	chr4	134595160	134595360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-27409.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	41.59	38.23	53.05	52.29	61.77	56.44	40.19	44.89	67.07	57.24	69.34	55.13
Merged-chr3-153406409-3	chr3	153406314	153406514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-107765.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	27.86	39.99	55.33	58.72	44.18	47.98	61.12	86.16	42.29	41.67	65.32	38.22
Merged-chr6-134928744-3	chr6	134928647	134928847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037955)	promoter-TSS (NR_037955)	-345.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	149.81	128.28	118.65	128.7	114.96	131.39	120.58	111.7	181.35	174.23	207.53	100.87
Merged-chr19-17277047-1	chr19	17276947	17277147	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62458.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.21	0.0	0.0	0.0	0.82	0.0	0.0	0.0	11.6	5.02	4.52	12.22
Merged-chr7-88243251-3	chr7	88243149	88243349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34836.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	70.26	63.39	99.83	57.92	84.68	96.27	66.1	82.04	90.28	77.83	103.51	45.11
Merged-chr2-83941024-3	chr2	83940975	83941175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027964, exon 1 of 9)	exon (NM_027964, exon 1 of 9)	151.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	21.8	13.83	19.4	6.03	19.64	25.71	13.95	10.85	13.96	14.06	19.6	14.41
Merged-chr5-30888060-3	chr5	30887963	30888163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_122117)	promoter-TSS (NR_122117)	-789.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	86.41	58.35	57.05	78.83	63.41	78.39	41.52	54.81	68.25	79.33	42.21	52.94
Merged-chr15-76351213-3	chr15	76351128	76351328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	-66.0	NM_001164607	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	118.31	124.25	143.18	135.14	155.46	179.05	129.88	138.17	204.95	183.27	173.36	95.86
Merged-chr6-114457535-3	chr6	114457430	114457630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-992.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	61.38	52.32	76.44	58.72	70.37	65.22	74.41	90.93	97.56	72.3	106.02	69.23
Merged-chr17-57031856-4	chr17	57031728	57031928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-321.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	260.85	281.21	287.51	283.55	331.37	418.31	302.61	311.5	358.76	466.96	455.75	262.83
Merged-chr2-75763464-3	chr2	75763352	75763552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58789.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	73.49	50.81	54.19	47.86	71.59	130.13	68.76	52.51	220.68	238.0	275.36	121.55
Merged-chr8-34744877-2	chr8	34744776	34744976	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62734.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	7.27	2.26	5.13	14.08	2.45	0.94	8.3	7.91	87.33	49.71	101.5	25.06
Merged-chr4-95106157-3	chr4	95106065	95106265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53943.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	126.39	153.94	152.31	211.56	112.5	107.87	111.94	176.19	127.85	122.51	158.28	104.63
Merged-chr7-128744861-3	chr7	128744759	128744959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029982)	promoter-TSS (NM_001029982)	-11.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	90.05	77.97	55.9	65.56	111.69	98.46	72.08	62.44	105.82	106.95	92.96	59.52
Merged-chr19-12445200-3	chr19	12445090	12445290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-15589.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	59.36	46.78	41.64	30.57	56.05	76.83	37.87	52.43	67.07	49.71	54.27	35.09
Merged-chr15-27926054-3	chr15	27925937	27926137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99811.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	142.94	130.29	192.24	152.43	148.1	133.58	182.03	224.97	193.74	144.61	262.8	120.61
Merged-chr11-46810708-3	chr11	46810603	46810803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178759)	promoter-TSS (NM_178759)	-96.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	67.03	51.56	58.19	80.84	78.96	85.92	55.14	83.92	82.41	88.87	107.03	50.12
Merged-chr10-25464451-3	chr10	25464359	25464559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 4 of 16)	intron (NM_001358754, intron 4 of 16)	56091.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	42.8	53.07	80.43	30.97	46.64	54.25	42.52	59.86	63.73	46.7	62.81	30.07
Merged-chr7-90021237-3	chr7	90021116	90021316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7943.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	28.67	16.35	32.52	27.75	20.46	38.26	37.2	47.41	37.76	50.21	46.73	21.93
Merged-chr12-108765955-3	chr12	108765864	108766064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27347.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	32.71	20.37	36.51	24.94	38.05	39.82	27.57	37.6	32.45	37.16	53.77	25.06
Merged-chr15-83430486-3	chr15	83430383	83430583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	2367.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	16.15	13.83	20.54	20.11	24.96	28.54	20.26	22.29	21.64	18.08	20.1	8.14
Merged-chr1-144002874-3	chr1	144002774	144002974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009061, intron 2 of 4)	intron (NM_009061, intron 2 of 4)	1275.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	41.19	30.69	67.88	43.04	41.73	36.37	41.52	57.76	39.34	46.7	64.32	31.33
Merged-chr12-99942695-3	chr12	99942600	99942800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-21799.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	34.32	55.08	57.05	75.21	50.32	49.54	57.13	86.36	51.53	30.13	72.86	31.33
Merged-chr4-99200203-3	chr4	99200117	99200317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	6070.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	59.36	36.22	53.62	61.54	48.68	65.54	36.87	62.16	139.06	115.48	139.69	95.55
Merged-chr10-19068518-3	chr10	19068415	19068615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53105.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	34.32	31.44	43.93	24.13	28.23	39.51	20.93	24.31	57.43	39.16	46.23	23.18
Merged-chr11-115060016-3	chr11	115059904	115060104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	2035.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	92.07	77.97	141.47	121.06	37.64	61.15	63.78	70.46	43.66	44.69	81.9	44.8
Merged-chr10-127266743-1	chr10	127266643	127266843	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027151, intron 1 of 13)	CpG	481.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	3.63	3.27	6.28	10.46	7.36	7.21	5.31	7.85	18.49	14.56	5.02	14.41
Merged-chr4-45084626-3	chr4	45084534	45084734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024142)	promoter-TSS (NM_001024142)	-30.0	NM_001024142	269529.0	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	49.67	36.72	46.78	53.09	65.87	85.29	57.13	87.14	60.78	68.29	105.02	36.34
Merged-chr16-95701961-3	chr16	95701860	95702060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-447.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	61.78	58.35	88.99	58.32	76.09	96.27	56.47	75.98	85.56	82.85	132.15	53.26
Merged-chr6-83011454-1	chr6	83011354	83011554	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	22017.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.65	8.55	6.85	4.83	2.05	15.05	11.96	4.46	9.24	10.04	15.58	2.19
Merged-chr7-105811132-3	chr7	105811019	105811219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-32.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	265.7	261.09	250.43	308.49	313.37	367.51	272.71	290.72	323.95	340.93	374.35	211.77
Merged-chr8-115494549-3	chr8	115494455	115494655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	212339.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	31.09	20.12	18.25	17.29	31.5	31.04	43.51	32.22	28.13	29.62	28.64	20.99
Merged-chr6-125581432-3	chr6	125581331	125581531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	L1_Mur3|LINE|L1	28483.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	29.48	50.81	61.04	26.95	27.0	39.2	36.21	21.36	62.15	63.77	76.38	30.39
Merged-chrX-20425480-3	chrX	20425384	20425584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289684)	promoter-TSS (NM_001289684)	-204.0	NM_199317	382207.0	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	76.72	52.07	46.21	64.75	72.41	64.91	72.08	78.62	74.15	77.32	89.94	47.3
Merged-chr11-61579643-3	chr11	61579493	61579693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010148)	promoter-TSS (NM_010148)	94.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	31.09	35.72	17.11	28.15	16.36	25.4	25.58	17.24	27.14	35.65	23.11	21.62
Merged-chr11-108351008-3	chr11	108350884	108351084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7096.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	23.02	29.68	43.35	57.11	27.82	21.64	17.94	32.8	27.73	31.13	67.84	24.43
Merged-chr6-83441735-3	chr6	83441644	83441844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	-11.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	44.42	35.21	36.51	33.38	38.46	44.21	29.9	47.69	29.9	30.13	31.66	18.8
Merged-chr6-113604760-3	chr6	113604655	113604855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133937)	promoter-TSS (NM_133937)	-17.0	NM_133937	101314.0	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	27.05	26.91	23.39	18.1	28.64	28.85	21.59	20.5	31.47	43.68	38.19	25.06
Merged-chr2-24975957-3	chr2	24975853	24976053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-80.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	122.35	127.02	128.35	126.29	152.19	156.47	112.27	120.65	148.89	121.01	169.84	87.09
Merged-chr3-121171693-3	chr3	121171587	121171787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	8.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	67.84	90.3	68.45	101.76	97.37	100.34	123.24	95.8	103.46	88.37	125.12	57.64
Merged-chr2-121474028-3	chr2	121473942	121474142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081975)	promoter-TSS (NM_001081975)	-19.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	25.44	18.86	33.66	30.97	36.41	38.26	15.61	29.19	48.39	41.67	48.74	26.94
Merged-chr15-57037346-3	chr15	57037252	57037452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227809.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	14.54	15.59	24.53	26.14	67.91	60.21	75.73	85.04	38.35	31.63	26.13	12.53
Merged-chr11-51606912-3	chr11	51606806	51607006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010448)	promoter-TSS (NM_010448)	-25.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	124.77	149.16	90.7	86.88	121.5	177.8	94.0	92.13	172.69	153.14	134.67	80.82
Merged-chr17-70850701-1	chr17	70850601	70850801	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	509.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	31.9	43.77	25.67	19.71	29.05	59.58	24.58	16.18	45.63	65.27	38.19	19.11
Merged-chr12-25101235-3	chr12	25101130	25101330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5138.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	93.68	95.08	90.13	125.89	104.32	107.56	103.31	113.08	88.71	81.84	107.03	72.05
Merged-chr2-90559122-3	chr2	90559026	90559226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	21521.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	45.23	29.18	57.62	63.15	55.23	65.54	30.23	36.17	50.94	65.27	60.3	30.07
Merged-chr7-74684189-3	chr7	74684131	74684331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-129451.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	114.27	92.56	107.25	116.24	99.41	100.97	57.47	145.63	144.76	164.69	121.1	92.1
Merged-chr11-116027966-3	chr11	116027873	116028073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-2343.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	72.68	65.15	46.21	37.4	56.46	122.29	36.21	37.91	91.26	77.83	67.84	52.32
Merged-chr10-39451280-3	chr10	39451178	39451378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81479.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	110.64	86.53	158.59	144.79	105.96	99.72	109.62	195.95	128.44	76.82	142.71	96.17
Merged-chr5-105595728-3	chr5	105595630	105595830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	76259.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	25.04	24.9	49.63	27.75	44.59	36.69	32.88	32.33	44.06	25.61	41.71	27.88
Merged-chr12-33170305-3	chr12	33170194	33170394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	22608.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	23.82	18.61	34.23	29.36	24.14	24.15	18.27	36.79	55.47	43.68	47.74	43.23
Merged-chr18-38296757-3	chr18	38296724	38296924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	19.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	70.66	88.03	61.04	109.4	66.68	74.32	76.73	74.3	81.43	69.79	99.99	52.0
Merged-chr19-6921972-3	chr19	6921869	6922069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-161.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	221.68	182.11	244.16	183.81	284.74	297.89	154.79	169.32	242.91	294.23	286.42	158.2
Merged-chr1-118507438-3	chr1	118507407	118507607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 16 of 39)	intron (NM_001359330, intron 16 of 39)	-48242.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	10.09	15.59	23.39	20.11	13.5	16.31	11.63	18.98	23.8	15.57	25.63	15.35
Merged-chr5-136568953-3	chr5	136568863	136569063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-11653	-1473.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	26.25	29.93	15.4	17.29	24.55	26.03	10.96	18.5	23.41	19.08	34.17	13.47
Merged-chr9-58549088-3	chr9	58548988	58549188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8148.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	17.36	27.67	25.1	5.23	37.23	89.05	31.22	28.04	31.86	44.69	33.16	17.54
Merged-chr7-80947720-3	chr7	80947630	80947830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019951)	promoter-TSS (NM_019951)	-180.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	43.21	52.82	43.93	51.08	47.46	56.76	53.15	51.67	48.58	57.24	60.3	35.71
Merged-chr19-55840957-3	chr19	55840851	55841051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-54370.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	37.55	34.46	61.04	30.57	43.36	32.61	25.58	33.79	44.65	33.14	44.72	20.99
Merged-chr7-106617119-1	chr7	106617019	106617219	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277179, intron 1 of 2)	MMVL30-int|LTR|ERV1	27526.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.0	38.75	34.65	41.2	27.25
Merged-chr9-57561123-5	chr9	57561017	57561217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 1 of 8)	CpG	173.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	24.23	27.42	19.97	30.57	23.73	29.16	25.91	18.36	33.83	32.64	27.64	31.64
Merged-chr2-102887670-2	chr2	102887588	102887788	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	13977.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.42	6.54	1.71	6.44	13.91	15.37	20.93	17.75	28.91	17.07	55.27	19.11
Merged-chr12-84174468-3	chr12	84174473	84174673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	19442.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	33.92	37.98	48.49	34.19	49.5	48.6	37.87	36.31	71.4	40.67	41.71	26.63
Merged-chr7-137437568-3	chr7	137437452	137437652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023140)	promoter-TSS (NM_023140)	-21.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	90.45	92.31	100.97	105.38	127.23	147.07	93.34	120.7	134.53	113.48	199.99	72.68
Merged-chr2-101628461-1	chr2	101628361	101628561	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009020, intron 2 of 2)	intron (NM_009020, intron 2 of 2)	525.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	9.29	2.52	5.7	9.25	7.36	4.39	2.66	7.85	15.34	12.55	17.08	8.46
Merged-chr5-4104517-3	chr5	4104415	4104615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020010, exon 1 of 10)	5' UTR (NM_020010, exon 1 of 10)	182.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	75.51	58.61	72.45	82.05	96.55	97.21	71.42	133.49	137.68	132.05	173.36	86.46
Merged-chr1-72284321-3	chr1	72284236	72284436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175564)	promoter-TSS (NM_175564)	-15.0	NM_001356516	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	142.14	126.02	148.32	151.23	178.37	225.15	158.11	257.16	219.31	177.24	307.52	136.9
Merged-chr2-50296589-3	chr2	50296494	50296694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	207.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	144.96	128.28	125.5	141.98	134.19	177.17	205.28	139.18	131.98	186.78	190.94	123.43
Merged-chr13-67779685-3	chr13	67779592	67779792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	-1.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	60.57	27.92	70.17	71.19	81.0	84.66	77.4	95.55	138.08	109.46	133.16	63.91
Merged-chr5-137831716-3	chr5	137831614	137831814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 2 of 6)	MLTR14|LTR|ERV1	4564.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	28.27	22.89	48.49	24.13	45.41	44.84	26.91	45.73	29.11	31.13	51.25	26.94
Merged-chr15-50889347-3	chr15	50889247	50889447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-233.0	NR_035444	100316685.0		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	33.52	21.63	28.52	31.37	20.05	37.63	34.21	41.66	45.04	31.13	54.77	30.07
Merged-chr19-21894953-1	chr19	21894853	21895053	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116613.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.44	2.52	11.41	9.25	4.91	5.02	16.28	10.68	2.75	3.51	3.52	5.64
Merged-chr2-128709646-3	chr2	128709581	128709781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	10766.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	35.53	27.92	44.5	47.06	58.09	46.72	85.04	53.33	28.72	35.15	26.63	21.3
Merged-chr13-9149635-3	chr13	9149552	9149752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 8 of 17)	intron (NM_172585, intron 8 of 17)	55771.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	48.46	49.55	60.47	67.57	60.96	60.21	45.18	89.44	71.99	47.7	98.99	64.85
Merged-chr3-108445252-3	chr3	108445130	108445330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204979)	promoter-TSS (NM_001204979)	29.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	36.75	42.26	61.04	53.49	71.59	58.01	47.5	62.92	70.02	64.27	126.63	44.48
Merged-chr16-50445207-3	chr16	50445114	50445314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12748.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	31.5	25.4	29.09	24.94	30.27	42.65	18.27	47.69	41.11	17.57	46.23	25.06
Merged-chr6-108503828-3	chr6	108503720	108503920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 53 of 61)	L1ME1|LINE|L1	14077.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	96.1	78.23	121.51	100.95	159.55	163.69	123.24	170.33	151.45	166.2	238.18	111.52
Merged-chr17-10599208-1	chr17	10599108	10599308	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	142992.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	5.65	4.53	0.57	7.64	6.55	4.39	13.62	19.12	4.52	6.53	8.04	3.13
Merged-chr17-45563401-2	chr17	45563281	45563481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-555.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	25.44	19.12	23.96	8.04	29.46	46.72	6.64	12.11	21.05	24.1	22.61	11.28
Merged-chr19-44931553-3	chr19	44931456	44931656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172638, intron 1 of 19)	CpG	437.0	NM_001081225	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	25.44	21.38	18.83	26.95	20.86	22.58	16.28	28.51	35.99	26.61	27.13	24.12
Merged-chr1-157412674-3	chr1	157412587	157412787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-92.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	104.99	114.95	132.92	123.88	122.32	136.72	97.66	117.03	173.87	134.06	166.32	97.43
Merged-chr6-8495353-3	chr6	8495244	8495444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13817.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	41.99	14.09	35.37	30.16	37.23	62.4	54.81	102.42	55.27	44.19	62.81	31.64
Merged-chr11-104469500-3	chr11	104469400	104469600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-639.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	16.15	17.1	17.68	9.65	28.64	21.32	12.29	19.82	37.76	32.64	38.19	17.86
Merged-chr7-19817629-3	chr7	19817536	19817736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	5119.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	74.7	64.64	78.15	43.04	82.23	90.0	78.72	59.78	111.33	94.4	104.01	70.48
Merged-chr17-47521752-3	chr17	47521673	47521873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	16722.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	21.4	18.36	22.25	15.69	23.32	21.01	25.24	33.73	18.69	21.09	27.64	15.98
Merged-chr2-153161727-2	chr2	153161636	153161836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	435.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	21.0	25.66	19.97	33.38	24.14	16.93	23.25	18.39	20.65	39.67	25.63	17.23
Merged-chr5-67600122-3	chr5	67600022	67600222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7761.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	22.21	14.84	35.37	20.51	26.59	29.48	15.61	37.07	20.26	9.04	27.64	21.93
Merged-chr10-17723545-1	chr10	17723445	17723645	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010828, intron 1 of 1)	CpG	317.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	121.54	149.66	42.78	45.05	56.87	127.94	52.15	40.96	124.9	151.64	70.85	38.53
Merged-chr1-154097862-3	chr1	154097759	154097959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-103328.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	51.69	55.08	55.9	47.06	51.55	83.1	34.55	48.76	59.79	73.31	52.76	32.27
Merged-chr17-5626504-3	chr17	5626410	5626610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133910.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	56.13	44.02	96.41	82.05	74.46	56.44	97.99	124.35	105.62	113.48	121.1	84.27
Merged-chr7-90457224-3	chr7	90457098	90457298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	10.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	88.84	73.7	59.9	76.82	91.64	90.62	57.47	95.52	112.11	82.35	111.05	61.09
Merged-chr8-111643915-3	chr8	111643813	111644013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358993, intron 1 of 3)	CpG	470.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	89.64	91.3	65.03	92.51	89.18	107.87	54.48	75.42	119.19	132.56	137.68	64.22
Merged-chr8-83442584-3	chr8	83442479	83442679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019708)	promoter-TSS (NM_019708)	83.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	90.45	89.54	90.7	97.73	108.82	104.11	66.1	95.3	96.18	98.41	128.13	51.38
Merged-chr19-7020279-3	chr19	7020157	7020357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	-788.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	67.84	47.79	74.16	79.64	57.27	67.42	52.82	77.92	62.94	44.69	94.97	56.7
Merged-chr11-69837925-1	chr11	69837825	69838025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-600.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	37.55	48.54	34.23	42.23	51.55	48.92	38.86	27.11	31.86	39.16	33.16	23.81
Merged-chr4-3766561-3	chr4	3766465	3766665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	MTD|LTR|ERVL-MaLR	51601.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	20.59	21.38	40.5	50.27	47.87	30.73	47.5	35.83	37.57	33.14	37.18	37.59
Merged-chr4-126228247-3	chr4	126228144	126228344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25534.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	27.86	37.48	28.52	24.13	31.09	72.75	30.89	27.03	51.93	65.78	27.13	21.62
Merged-chr15-58215438-3	chr15	58215317	58215517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-525.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	34.32	43.26	40.5	33.78	68.32	49.54	45.84	46.09	74.54	64.27	92.96	41.98
Merged-chr2-73475858-3	chr2	73475787	73475987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	9866.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	56.53	41.25	35.94	54.3	54.41	44.53	53.48	65.52	54.48	57.24	58.29	35.4
Merged-chr11-114890256-3	chr11	114890167	114890367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347654, exon 1 of 7)	5' UTR (NM_001347654, exon 1 of 7)	226.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	127.2	114.45	110.67	131.52	146.87	131.7	138.18	138.14	161.28	147.62	164.31	126.25
Merged-chr6-113330753-3	chr6	113330654	113330854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010957, intron 3 of 6)	ORR1A4|LTR|ERVL-MaLR	3778.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	45.63	25.15	31.38	25.74	41.32	36.06	14.28	27.87	47.4	45.19	69.85	26.63
Merged-chr6-120916894-3	chr6	120916785	120916985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-61.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	54.11	55.08	67.88	56.31	63.0	76.51	47.17	54.34	83.59	99.92	110.55	62.03
Merged-chr12-69502111-3	chr12	69501984	69502184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26534.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	49.67	46.28	61.04	55.91	71.18	82.78	68.43	94.23	89.89	53.73	88.94	53.88
Merged-chr14-31128411-3	chr14	31128309	31128509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	521.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	17.36	24.65	33.09	18.5	19.64	28.54	18.27	20.33	18.88	19.58	21.61	13.78
Merged-chr5-110094534-3	chr5	110094443	110094643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5426.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	83.59	100.61	115.8	179.78	105.14	114.77	128.55	143.83	115.85	137.58	179.89	98.05
Merged-chr7-82648520-3	chr7	82648420	82648620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	8.0	NM_177894	330577.0	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	127.2	129.79	120.37	134.33	158.32	177.48	103.64	164.8	186.85	189.29	204.01	109.02
Merged-chr16-24859949-3	chr16	24859832	24860032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138077.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	49.67	36.72	32.52	22.12	45.0	45.47	25.58	40.18	52.32	49.21	61.3	28.82
Merged-chr1-10038064-3	chr1	10037971	10038171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	88.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	71.47	76.46	54.76	104.57	68.32	112.89	127.89	83.22	74.94	62.26	75.87	69.86
Merged-chr8-79163064-3	chr8	79162968	79163168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	85515.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	50.47	41.0	39.93	50.27	50.73	58.01	57.47	93.79	51.93	37.16	41.2	29.13
Merged-chr17-21450334-3	chr17	21450248	21450448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-26.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	74.7	64.89	90.7	65.96	86.73	118.22	62.45	117.31	154.4	132.05	250.24	86.77
Merged-chr14-105177368-3	chr14	105177258	105177458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134077)	promoter-TSS (NM_134077)	-31.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	77.93	80.24	81.58	71.19	93.68	138.29	68.1	102.48	145.35	131.55	169.84	58.27
Merged-chr7-78847257-3	chr7	78847150	78847350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029585)	promoter-TSS (NM_029585)	-39.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	58.55	51.56	37.08	51.08	59.73	70.87	38.86	67.99	69.43	71.3	83.91	51.38
Merged-chr4-155841198-3	chr4	155841118	155841318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024263, intron 3 of 9)	CpG	1538.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	52.09	49.3	56.48	58.72	40.09	36.37	53.48	49.43	37.57	32.64	54.77	35.09
Merged-chr8-121947882-3	chr8	121947766	121947966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2626.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	82.37	51.81	68.45	52.29	84.68	87.17	56.47	70.01	61.96	54.23	81.9	45.42
Merged-chr19-40708333-3	chr19	40708216	40708416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	48546.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	94.08	109.41	128.92	125.89	168.96	151.14	108.62	154.12	155.58	130.05	182.9	81.45
Merged-chr1-91053405-1	chr1	91053305	91053505	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-39.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	32.71	24.4	41.07	36.6	33.55	31.67	23.25	29.83	53.3	39.16	89.44	37.91
Merged-chr18-49642931-3	chr18	49642813	49643013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112688.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	18.17	18.36	29.66	42.23	37.64	35.12	46.17	47.19	35.01	32.64	47.23	26.94
Merged-chr10-25331918-3	chr10	25331817	25332017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27881.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	159.1	140.6	132.92	171.74	142.37	152.71	125.23	169.88	182.13	188.79	221.59	80.82
Merged-chr9-108567485-3	chr9	108567386	108567586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023247)	promoter-TSS (NM_023247)	-144.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	137.69	160.98	83.86	78.43	113.32	211.98	74.07	65.5	175.45	198.83	149.24	69.86
Merged-chr2-39008071-3	chr2	39007968	39008168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028809)	promoter-TSS (NM_028809)	-71.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	130.83	100.61	133.49	111.81	159.96	116.34	113.93	157.63	132.37	148.12	216.57	88.65
Merged-chr5-86065635-3	chr5	86065520	86065720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-37.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	150.21	160.47	144.33	187.43	175.1	200.69	123.24	196.94	263.56	245.03	325.11	136.9
Merged-chr6-39206972-3	chr6	39206883	39207083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-210.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	35.53	37.48	28.52	25.74	39.27	50.8	22.92	41.02	45.43	48.2	49.24	28.51
Merged-chr12-102451701-3	chr12	102451593	102451793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11880.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	109.83	98.85	128.92	165.3	114.96	128.88	187.68	142.68	128.24	108.45	195.97	101.81
Merged-chr7-7295712-3	chr7	7295600	7295800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357104, intron 1 of 9)	intron (NM_001357104, intron 1 of 9)	3136.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	23.02	28.67	31.95	34.99	29.86	36.69	17.27	39.34	29.9	25.61	34.17	15.04
Merged-chr8-83165420-3	chr8	83165291	83165491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	39.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	62.99	68.42	61.04	53.09	77.73	81.53	59.46	73.29	83.0	58.24	53.26	41.66
Merged-chr12-85523915-3	chr12	85523823	85524023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50033.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	104.18	53.32	116.94	107.79	132.14	192.85	90.35	107.27	144.37	162.18	149.74	74.56
Merged-chr15-74957059-3	chr15	74956938	74957138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008529, intron 1 of 3)	intron (NM_008529, intron 1 of 3)	1932.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	23.42	21.63	34.23	47.06	27.41	25.4	26.57	47.41	36.39	18.08	65.83	26.0
Merged-chr14-75845847-3	chr14	75845720	75845920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	564.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	87.62	101.62	63.89	70.79	76.09	101.28	74.07	86.3	116.24	125.53	117.08	82.08
Merged-chr1-107583039-3	chr1	107582942	107583142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6964.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	93.28	114.45	118.08	123.88	123.96	141.42	125.23	114.48	134.34	114.48	107.03	89.91
Merged-chr4-62629655-3	chr4	62629549	62629749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	9977.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	33.92	40.75	53.62	48.67	49.09	45.47	35.87	59.69	51.93	45.69	60.8	35.71
Merged-chr4-116557591-3	chr4	116557498	116557698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-129.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	159.1	134.57	179.69	158.06	146.46	169.02	104.97	138.48	212.23	188.79	231.14	102.44
Merged-chr8-69716525-3	chr8	69716424	69716624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359086, exon 1 of 6)	5' UTR (NM_001359086, exon 1 of 6)	378.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	98.93	71.18	43.93	47.06	79.78	119.47	36.21	66.98	114.87	102.93	120.6	70.48
Merged-chr12-85257462-3	chr12	85257372	85257572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-11487.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	100.95	78.23	107.25	88.89	125.59	130.76	88.36	100.6	95.2	103.94	124.62	59.52
Merged-chr9-48532903-3	chr9	48532802	48533002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37559.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	29.07	30.69	59.33	53.89	52.77	39.51	32.22	47.16	55.86	44.69	87.43	41.98
Merged-chr14-16244054-3	chr14	16243947	16244147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	-716.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	59.36	43.77	34.8	34.19	54.82	60.52	27.9	39.22	82.02	71.3	73.86	28.19
Merged-chr7-84689989-3	chr7	84689900	84690100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360577)	promoter-TSS (NM_001360577)	-43.0	NM_001360582	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	189.78	165.25	195.67	191.04	188.19	248.98	154.46	220.49	279.1	265.11	368.82	151.93
Merged-chr9-121314234-3	chr9	121314117	121314317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	16715.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	65.82	72.19	61.61	41.02	79.37	90.62	50.82	43.93	101.49	105.94	108.54	38.53
Merged-chr10-94378486-3	chr10	94378373	94378573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	66524.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	85.6	69.92	90.7	90.49	93.68	118.84	103.31	109.01	101.69	77.83	124.11	78.94
Merged-chr2-145934727-3	chr2	145934619	145934819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025820)	promoter-TSS (NM_025820)	-19.0	NM_025820	66877.0	Mm.248755	NM_025820	ENSMUSG00000001767	Crnkl1	1200013P10Rik|5730590A01Rik|C80326|crn	crooked neck pre-mRNA splicing factor 1	protein-coding	73.49	35.47	51.34	46.25	69.14	63.97	37.87	58.49	92.25	102.43	99.49	70.8
Merged-chr2-79966916-3	chr2	79966824	79967024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-58525.0	NM_001009978	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	65.82	38.48	87.28	136.75	107.19	75.88	141.84	167.69	115.65	96.91	181.9	103.06
Merged-chr8-106148117-3	chr8	106148036	106148236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2218.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	20.59	23.14	51.91	26.55	29.86	35.75	33.22	37.43	51.73	41.67	47.74	42.29
Merged-chr7-16308673-3	chr7	16308578	16308778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-905.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	79.95	92.56	77.58	54.3	59.32	94.07	30.56	69.03	98.54	78.33	64.82	57.01
Merged-chr15-102150909-3	chr15	102150819	102151019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146064, intron 1 of 14)	intron (NM_146064, intron 1 of 14)	344.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	46.03	41.75	57.62	64.35	111.28	68.36	72.08	105.48	76.31	88.87	83.91	64.85
Merged-chr8-72570963-5	chr8	72570917	72571117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172396)	promoter-TSS (NM_172396)	31.0	NM_172396	66818.0	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	67.84	100.11	54.19	113.82	72.82	97.21	101.64	69.28	91.85	91.38	114.06	84.9
Merged-chr10-43856541-3	chr10	43856437	43856637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	30630.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	55.32	53.58	98.69	83.26	72.82	76.2	63.44	90.59	92.64	72.81	87.93	46.99
Merged-chr18-84088135-3	chr18	84088023	84088223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-35.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	62.59	59.36	52.48	52.69	57.27	61.77	52.82	99.65	55.27	62.76	102.0	51.69
Merged-chr1-154094489-3	chr1	154094394	154094594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106693.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	25.04	25.4	21.11	18.5	27.0	37.0	29.23	29.66	43.86	42.18	41.71	25.69
Merged-chr17-21515894-3	chr17	21515793	21515993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19646.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	31.09	18.61	9.7	14.88	23.32	20.07	23.92	22.49	28.32	29.12	31.15	14.41
Merged-chr6-122657898-3	chr6	122657800	122658000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31476.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	142.14	135.07	154.59	178.17	149.32	156.16	115.93	145.46	142.6	146.11	171.85	118.1
Merged-chr9-106908894-1	chr9	106908794	106908994	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153413, intron 46 of 52)	intron (NM_153413, intron 46 of 52)	-16956.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	4.85	5.28	3.99	4.83	0.41	2.51	2.66	8.41	36.58	18.08	52.76	13.78
Merged-chr4-101020240-3	chr4	101020124	101020324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48814.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	33.52	20.63	30.23	60.73	23.73	35.75	53.48	47.16	36.39	32.64	56.28	14.41
Merged-chr19-5894174-3	chr19	5894072	5894272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	-44.0	NM_198634	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	47.24	35.21	37.65	50.27	35.18	55.82	36.21	28.6	54.29	59.75	36.68	35.71
Merged-chr10-111544126-3	chr10	111544034	111544234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37848.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	100.95	81.24	125.5	104.97	105.14	133.9	113.93	154.35	126.47	158.67	152.75	79.26
Merged-chr9-22328013-3	chr9	22327961	22328161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2629.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	83.18	85.02	76.44	100.95	83.87	133.9	79.39	98.94	94.8	126.03	156.77	83.96
Merged-chr11-69696020-3	chr11	69695919	69696119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	79.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	29.07	43.77	76.44	43.04	56.87	80.9	60.12	68.97	47.8	36.65	46.23	27.57
Merged-chr17-65730488-3	chr17	65730386	65730586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42266.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	20.59	32.45	16.54	22.52	57.27	42.96	35.87	31.4	60.97	38.66	58.29	28.51
Merged-chr2-144011399-3	chr2	144011299	144011499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024281)	promoter-TSS (NM_024281)	-136.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	341.21	326.48	353.68	395.36	317.06	443.08	366.72	380.69	419.14	437.33	527.61	284.76
Merged-chr3-116808235-3	chr3	116808153	116808353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-87.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	85.6	79.48	63.89	73.6	106.37	106.93	58.13	114.79	134.14	115.48	162.8	94.92
Merged-chr2-150675138-3	chr2	150675034	150675234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6894.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	24.23	23.14	26.81	15.69	21.27	20.7	13.62	19.21	29.31	20.59	21.61	14.72
Merged-chr11-76623456-3	chr11	76623400	76623600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45761.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	19.79	32.45	23.39	37.0	35.18	18.81	25.91	24.64	48.98	45.69	40.2	25.06
Merged-chr1-125560940-3	chr1	125560845	125561045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-57.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	153.85	172.05	179.69	188.63	179.19	193.16	143.83	178.26	212.03	219.42	316.06	156.32
Merged-chr7-141414185-3	chr7	141414095	141414295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172116)	promoter-TSS (NM_172116)	-70.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	146.17	152.43	178.55	106.58	160.37	224.2	107.96	146.47	199.84	208.37	193.46	107.14
Merged-chr8-115423896-3	chr8	115423797	115423997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	282997.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	33.52	35.47	37.08	28.96	42.55	47.04	40.19	43.26	41.5	31.13	46.23	30.39
Merged-chr15-102406025-4	chr15	102405869	102406069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-347.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	240.26	238.2	248.15	271.89	250.78	318.28	203.62	248.41	360.92	405.7	469.32	256.88
Merged-chr8-39674384-1	chr8	39674284	39674484	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31706.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.65	2.52	2.28	7.64	5.73	3.14	9.3	10.79	0.2	3.51	1.0	0.31
Merged-chr7-92670070-3	chr7	92669973	92670173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-161.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	298.4	307.37	367.37	384.1	357.56	387.58	334.83	358.66	397.7	442.86	475.35	234.32
Merged-chr4-137388563-3	chr4	137388445	137388645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21246.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	53.7	48.04	64.46	53.49	56.87	54.25	56.47	52.29	59.6	47.7	50.25	55.45
Merged-chr8-57487952-3	chr8	57487855	57488055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	-8.0	NR_126553	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	178.88	145.38	152.31	233.28	208.23	255.25	163.43	277.12	227.17	220.93	335.66	151.62
Merged-chr16-28929997-1	chr16	28929897	28930097	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177718)	promoter-TSS (NM_177718)	-299.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	2.83	8.3	5.7	6.84	4.5	6.9	3.99	8.1	3.34	0.0	5.53	2.82
Merged-chr4-94603193-3	chr4	94603102	94603302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	45.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	59.36	71.94	74.16	78.43	90.41	93.44	81.38	93.51	138.86	145.61	155.27	76.75
Merged-chr11-20333223-1	chr11	20333123	20333323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-510.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	16.56	27.92	22.25	33.78	24.14	24.77	32.55	33.28	23.21	27.62	30.15	21.93
Merged-chr6-91877978-3	chr6	91877890	91878090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172730)	promoter-TSS (NM_172730)	-63.0	NM_172730	232236.0	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	145.37	128.53	128.35	135.14	133.78	172.78	87.69	142.49	193.54	204.86	196.47	135.64
Merged-chr5-144254627-1	chr5	144254527	144254727	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-598.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	2.02	1.26	3.99	0.8	4.5	5.33	5.31	3.95	16.33	23.1	21.1	14.72
Merged-chr6-129333981-3	chr6	129333887	129334087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2206.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	39.98	35.97	49.06	64.75	74.87	81.22	41.85	86.75	70.22	71.3	95.47	73.93
Merged-chr5-114774718-3	chr5	114774615	114774815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	268.0	NR_027872	67642.0	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	51.28	82.75	60.47	51.48	59.73	69.3	29.9	39.03	74.35	72.81	62.31	50.12
Merged-chr4-141874336-3	chr4	141874216	141874416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	604.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	30.28	33.7	28.52	30.97	20.05	39.51	26.91	13.01	77.3	63.77	45.22	43.23
Merged-chr10-61475744-3	chr10	61475686	61475886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153542)	promoter-TSS (NM_153542)	-47.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	86.01	56.59	98.12	109.8	96.14	108.81	88.03	120.53	107.2	106.95	169.34	76.12
Merged-chr17-35821201-3	chr17	35821104	35821304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-509.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	24.63	9.06	22.82	4.83	29.86	34.81	23.25	20.58	31.08	43.18	27.13	11.59
Merged-chr15-96700225-3	chr15	96700111	96700311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-483.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	25.44	16.85	15.97	6.84	19.23	20.38	15.61	16.49	16.72	30.63	19.09	18.17
Merged-chr19-40678691-3	chr19	40678572	40678772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	18902.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	92.87	63.64	151.17	167.72	114.96	116.34	186.35	201.17	118.6	82.35	205.52	95.55
Merged-chr4-148140388-6	chr4	148140276	148140476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027985)	promoter-TSS (NM_027985)	-114.0	NM_027985	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	44.01	67.16	39.93	69.18	57.68	68.99	94.67	50.94	61.56	85.36	78.89	50.12
Merged-chr13-111725543-3	chr13	111725460	111725660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	39382.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	138.1	148.4	172.85	143.59	81.41	105.99	82.38	94.79	158.73	151.13	276.87	135.02
Merged-chr3-61592524-3	chr3	61592427	61592627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	228020.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	45.63	44.52	54.19	53.49	56.05	65.85	60.12	99.17	84.97	86.86	65.83	52.0
Merged-chr2-167649523-3	chr2	167649480	167649680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11964.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	31.09	24.4	59.9	59.12	73.64	61.77	69.42	85.01	54.09	59.75	54.27	39.78
Merged-chr17-23993740-3	chr17	23993639	23993839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133731, exon 6 of 6)	3' UTR (NM_133731, exon 6 of 6)	4361.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	34.73	47.79	38.22	43.44	39.27	58.64	26.24	38.22	49.76	56.24	53.77	41.04
Merged-chr7-113722189-3	chr7	113722080	113722280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-43818.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	17.77	19.62	38.79	38.61	39.27	42.33	34.88	46.49	36.19	32.64	51.76	27.25
Merged-chr1-121440806-3	chr1	121440693	121440893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 3 of 23)	MTD|LTR|ERVL-MaLR	9726.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	74.3	59.61	91.84	149.22	58.5	49.86	65.44	83.75	39.34	26.61	60.3	27.57
Merged-chr17-26561461-3	chr17	26561345	26561545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-67.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	57.34	45.53	54.19	40.22	49.09	58.32	40.86	57.9	73.76	49.71	95.47	45.42
Merged-chr13-30659932-3	chr13	30659833	30660033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-126.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	98.93	91.81	97.55	83.26	88.37	80.27	55.8	70.71	136.89	111.47	147.73	49.81
Merged-chr9-109914417-3	chr9	109914299	109914499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-17375.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	99.74	98.6	113.52	107.39	119.05	127.31	89.35	97.26	160.3	184.27	196.47	93.04
Merged-chr5-150592697-3	chr5	150592566	150592766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1859.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	81.97	46.53	67.31	78.83	67.09	70.24	61.45	67.65	69.23	61.76	98.49	62.03
Merged-chr7-139273528-3	chr7	139273425	139273625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25043.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	24.63	12.32	19.4	34.19	37.64	19.76	29.9	53.13	35.4	30.13	48.24	22.87
Merged-chr1-171223380-1	chr1	171223280	171223480	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-866.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	1.62	1.51	2.28	1.21	0.0	3.14	4.32	3.64	25.96	18.58	16.58	12.22
Merged-chr1-88567384-3	chr1	88567255	88567455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	15838.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	76.72	88.29	100.97	104.97	122.73	153.02	73.08	132.93	154.6	175.23	220.09	98.99
Merged-chr9-44234987-3	chr9	44234865	44235065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-919.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	37.55	30.94	58.76	33.78	42.14	58.01	18.6	35.44	54.48	47.7	40.2	36.97
Merged-chr2-51972954-3	chr2	51972865	51973065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001141948, exon 1 of 8)	5' UTR (NM_001141948, exon 1 of 8)	243.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	33.52	25.66	26.24	26.14	47.05	39.82	23.92	42.76	42.29	45.19	51.25	23.81
Merged-chr15-102279501-3	chr15	102279431	102279631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	75.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	72.68	67.41	65.03	75.61	81.82	83.1	54.14	64.63	63.53	60.75	86.93	60.46
Merged-chr1-72307553-3	chr1	72307468	72307668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357520, exon 1 of 21)	5' UTR (NM_001357520, exon 1 of 21)	147.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	37.96	25.91	31.95	30.16	29.86	42.96	41.19	54.9	45.63	36.15	49.75	33.52
Merged-chr16-18811687-3	chr16	18811508	18811708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028403)	promoter-TSS (NR_028403)	364.0	NM_001161623	12544.0	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	75.11	83.0	60.47	79.64	81.41	73.38	61.78	77.75	90.67	108.96	90.95	41.66
Merged-chr3-19628220-3	chr3	19628106	19628306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16254.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	45.63	63.13	32.52	59.12	46.64	47.35	47.83	49.51	48.78	84.35	49.75	39.16
Merged-chr19-11965542-3	chr19	11965398	11965598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-346.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	280.64	265.11	262.98	282.34	307.24	386.95	269.06	279.14	380.79	431.81	381.89	220.85
Merged-chr11-11540768-1	chr11	11540668	11540868	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51502.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.02	2.52	2.28	4.02	3.27	4.08	6.98	1.96	20.06	9.04	14.07	7.52
Merged-chr19-29948396-3	chr19	29948286	29948486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164724, intron 1 of 7)	intron (NM_001164724, intron 1 of 7)	2596.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	21.8	22.13	14.26	22.12	18.82	28.22	14.62	17.24	24.0	24.1	42.21	23.49
Merged-chr8-60982752-1	chr8	60982652	60982852	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173873, intron 1 of 12)	CpG	559.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.25	5.79	3.99	4.42	13.09	3.45	7.97	9.81	10.42	13.05	10.05	9.4
Merged-chr15-58135162-3	chr15	58135079	58135279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-97.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	153.04	135.32	136.34	119.05	135.82	176.23	124.56	123.81	179.58	169.21	177.38	85.21
Merged-chr17-27907727-3	chr17	27907623	27907823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1519.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	24.63	21.38	18.25	24.53	20.86	33.87	15.94	24.28	32.45	40.17	27.64	16.92
Merged-chr3-107778167-3	chr3	107778035	107778235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17666.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	31.5	23.14	21.11	55.1	22.91	24.15	34.88	37.88	38.16	41.67	48.74	24.75
Merged-chr9-22070882-3	chr9	22070750	22070950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-152.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	127.6	97.34	110.1	109.8	102.68	152.08	93.67	135.95	172.5	160.17	235.16	92.1
Merged-chr1-180314892-3	chr1	180314788	180314988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15588.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	88.03	82.0	86.71	96.13	24.96	35.12	13.62	19.6	36.98	25.11	44.72	18.17
Merged-chr8-126872765-3	chr8	126872665	126872865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	23745.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	81.57	73.19	118.65	107.39	118.64	112.89	84.7	129.0	116.44	101.43	135.67	61.4
Merged-chr17-47225504-3	chr17	47225406	47225606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	AT_rich|Low_complexity|Low_complexity	-4724.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	105.79	59.11	73.02	96.13	74.05	78.39	60.79	72.2	80.64	86.86	75.87	60.46
Merged-chr2-151039400-3	chr2	151039290	151039490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	-11.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	69.05	51.81	63.89	51.08	93.68	68.67	50.16	56.44	97.16	72.81	94.97	62.03
Merged-chr3-108571645-3	chr3	108571623	108571823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	24.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	107.81	100.86	112.38	91.7	111.69	135.15	64.11	79.07	120.37	108.96	109.04	69.55
Merged-chr5-64229168-3	chr5	64229056	64229256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	-1201.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	34.73	22.13	61.61	41.83	45.41	57.7	79.06	102.34	38.16	59.75	83.41	41.35
Merged-chr14-10453500-1	chr14	10453400	10453600	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-42.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	16.56	17.1	9.13	10.46	26.18	23.83	16.61	21.64	33.24	33.64	41.71	17.54
Merged-chr5-150891748-3	chr5	150891664	150891864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-60843.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	16.96	16.35	22.82	18.5	26.59	23.52	22.92	27.34	26.95	35.15	25.63	21.3
Merged-chr17-8195819-3	chr17	8195702	8195902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001197046, exon 13 of 13)	3' UTR (NM_001197046, exon 13 of 13)	30284.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	53.3	49.55	122.65	109.0	43.36	37.94	56.47	74.8	53.89	24.1	70.35	42.92
Merged-chr19-40588496-3	chr19	40588401	40588601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-38.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	93.68	80.99	56.48	65.16	76.09	95.64	36.54	59.05	80.05	76.82	91.45	51.06
Merged-chr13-40922518-3	chr13	40922437	40922637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	4903.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	16.96	14.34	9.7	29.76	17.18	19.44	27.57	37.63	21.24	16.57	36.68	24.75
Merged-chr13-51734793-3	chr13	51734700	51734900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	58947.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	51.28	41.0	74.16	53.89	54.41	46.1	48.16	51.53	46.03	45.69	48.74	39.16
Merged-chrX-85719479-3	chrX	85719379	85719579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 12 of 19)	L3|LINE|CR1	57340.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	26.65	7.8	38.22	33.78	30.68	34.49	40.19	49.6	46.81	51.72	63.31	23.18
Merged-chr7-16286342-3	chr7	16286247	16286447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136471, intron 1 of 13)	CpG	448.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	227.34	202.98	201.37	203.92	228.28	316.71	176.71	210.73	278.12	291.22	326.11	169.16
Merged-chr11-77793401-3	chr11	77793296	77793496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7902.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	55.72	56.85	62.75	74.41	66.27	80.59	53.81	53.16	72.58	69.79	60.3	37.91
Merged-chr5-43737153-1	chr5	43737053	43737253	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 35 of 37)	intron (NM_001359906, intron 35 of 37)	44996.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.0	0.75	0.0	0.4	20.05	26.65	27.57	40.57	1.57	0.0	0.0	1.25
Merged-chr6-65137922-3	chr6	65137817	65138017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019455, intron 2 of 5)	intron (NM_019455, intron 2 of 5)	6813.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	27.46	12.83	31.95	23.73	25.36	20.07	24.58	40.01	32.06	31.63	47.74	28.19
Merged-chr8-84220296-3	chr8	84220205	84220405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-11398.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	123.56	70.18	98.12	95.32	102.68	105.67	78.06	80.13	103.06	107.45	136.68	77.38
Merged-chr3-130873965-3	chr3	130873876	130874076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143578.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	73.49	73.7	98.69	79.23	85.91	101.91	79.06	123.65	132.96	105.44	158.28	87.09
Merged-chr1-151817077-3	chr1	151816962	151817162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	61688.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	18.98	21.38	28.52	24.94	27.41	39.51	36.54	33.39	38.16	26.61	59.8	31.64
Merged-chr15-62056609-3	chr15	62056512	62056712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	17355.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	156.67	121.49	170.0	151.63	150.96	164.31	150.47	180.08	165.81	121.51	191.95	96.8
Merged-chr5-52424115-3	chr5	52424122	52424322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-16937.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	11.31	9.81	8.56	18.1	8.18	7.84	19.93	11.05	9.44	14.56	14.07	9.71
Merged-chr18-33213939-3	chr18	33213797	33213997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-35.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	214.42	217.57	219.06	195.47	182.05	190.97	173.73	242.38	265.53	236.99	360.78	132.83
Merged-chr2-91963742-3	chr2	91963667	91963867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138306)	promoter-TSS (NM_138306)	-204.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	142.54	143.62	140.33	119.45	144.0	166.51	128.55	122.47	173.28	178.75	215.57	123.11
Merged-chr13-30749221-3	chr13	30749133	30749333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013674)	promoter-TSS (NM_013674)	0.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	107.41	92.81	122.08	103.77	123.14	105.36	91.35	137.78	117.23	145.61	158.78	79.26
Merged-chr14-77036758-3	chr14	77036655	77036855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	-17.0	NM_001310648	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	111.04	115.2	106.1	60.73	81.0	112.89	63.78	79.51	188.43	187.29	184.41	81.45
Merged-chr2-18998245-3	chr2	18998144	18998344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355149)	promoter-TSS (NM_001355149)	-75.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	159.1	152.43	151.17	139.97	78.96	78.71	51.49	122.61	81.23	53.73	123.11	43.86
Merged-chr10-71238134-3	chr10	71238027	71238227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009360)	promoter-TSS (NM_009360)	-83.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	85.6	78.23	88.42	96.93	125.59	154.59	88.03	129.31	128.24	110.46	176.37	62.34
Merged-chr19-47732158-2	chr19	47732062	47732262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026377, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	406.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	16.56	19.12	12.55	14.48	16.36	16.62	11.29	13.88	17.7	13.05	14.57	7.52
Merged-chr1-171619217-3	chr1	171619125	171619325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-11815.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	100.14	92.31	114.09	109.4	87.14	121.98	81.71	108.65	114.28	92.39	158.28	89.91
Merged-chr2-117358054-3	chr2	117357960	117358160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15183.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	83.18	93.82	75.3	18.9	65.46	127.62	43.85	21.03	114.28	104.94	82.91	30.07
Merged-chr18-84762794-3	chr18	84762679	84762879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	18712.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	22.21	20.63	18.83	16.49	18.82	21.01	15.61	29.3	35.99	17.07	32.16	20.68
Merged-chr7-122034506-3	chr7	122034425	122034625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026140, exon 9 of 9)	3' UTR (NM_026140, exon 9 of 9)	-13327.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	25.84	25.15	26.24	18.5	18.82	23.52	13.29	26.75	22.23	28.62	31.66	17.23
Merged-chr2-84623971-3	chr2	84623865	84624065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25515.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	62.18	46.03	79.86	97.73	64.64	105.05	81.38	84.08	60.58	61.76	85.92	42.6
Merged-chr10-34297466-3	chr10	34297366	34297566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030203)	promoter-TSS (NM_030203)	45.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	49.67	36.97	36.51	36.6	45.0	44.53	23.92	47.19	53.89	66.28	80.9	38.53
Merged-chr14-75185982-3	chr14	75185913	75186113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	49588.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	23.82	45.02	29.66	4.42	29.46	58.95	27.24	19.32	55.66	50.71	31.15	20.99
Merged-chr9-110994847-3	chr9	110994744	110994944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-5131.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	38.76	29.93	35.94	30.97	24.55	46.1	17.94	28.65	44.65	33.64	49.75	23.81
Merged-chr19-6084982-3	chr19	6084868	6085068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	7.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	63.8	48.54	40.5	37.0	48.68	70.87	31.56	41.92	75.53	93.89	65.83	49.18
Merged-chr19-5802569-3	chr19	5802477	5802677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	95.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	39.57	37.23	35.94	25.74	31.91	45.15	22.92	18.06	57.04	56.24	42.71	20.36
Merged-chr5-125179287-3	chr5	125179173	125179373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-59.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	79.55	58.86	53.05	34.59	66.68	53.93	37.54	55.4	73.76	88.37	86.93	48.87
Merged-chr11-5788457-3	chr11	5788343	5788543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-40.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	123.97	119.48	124.36	103.37	111.28	136.72	101.98	118.15	153.61	147.12	179.39	98.68
Merged-chr16-93034176-3	chr16	93034077	93034277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208103.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	24.23	19.62	47.35	28.56	36.41	28.85	20.59	32.55	30.09	21.59	39.7	23.81
Merged-chr4-21776265-3	chr4	21776164	21776364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-6.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	49.26	57.85	58.19	50.68	83.87	73.38	56.47	78.22	94.8	92.89	92.96	63.28
Merged-chr2-11708620-3	chr2	11708545	11708745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	2933.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	103.37	91.81	100.4	100.95	84.28	103.48	94.67	117.76	94.41	76.82	119.09	68.61
Merged-chr11-74838579-3	chr11	74838488	74838688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 4 of 5)	CpG	7664.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	151.83	172.05	181.41	140.77	162.41	212.6	103.97	138.73	199.44	191.8	218.58	135.33
Merged-chr7-15922466-3	chr7	15922374	15922574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009156)	promoter-TSS (NM_009156)	-103.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	51.69	68.92	50.77	71.19	60.55	70.87	83.71	63.62	64.91	74.81	61.81	67.67
Merged-chr13-5604361-3	chr13	5604242	5604442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	253750.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	51.28	30.94	51.91	33.38	84.28	74.63	70.09	78.06	86.15	91.89	92.96	36.03
Merged-chr13-21940442-3	chr13	21940331	21940531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4663.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	52.09	49.8	41.64	57.51	63.82	72.75	44.84	57.79	46.42	65.27	48.74	24.12
Merged-chr14-102981392-2	chr14	102981283	102981483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	1249.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	20.59	27.92	30.8	32.58	28.23	22.58	33.22	25.01	33.83	46.7	36.68	25.69
Merged-chr3-90079530-3	chr3	90079444	90079644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293749)	promoter-TSS (NM_001293749)	23.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	157.88	159.72	154.59	181.39	150.14	205.7	113.93	175.6	154.2	185.28	245.71	103.38
Merged-chr18-36561307-3	chr18	36561204	36561404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175375, intron 1 of 33)	CpG-6857	701.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	26.25	16.85	22.82	12.47	23.32	30.1	21.59	19.65	37.57	34.14	32.66	28.51
Merged-chr12-111441777-3	chr12	111441697	111441897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-864.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	108.62	90.8	82.72	43.84	97.37	157.41	65.77	57.14	122.93	106.45	113.06	47.93
Merged-chr13-23555102-3	chr13	23555004	23555204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145713)	promoter-TSS (NM_145713)	72.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	17.77	23.14	21.11	30.57	21.27	21.64	22.92	12.06	13.37	28.12	57.28	31.01
Merged-chr3-105036511-3	chr3	105036432	105036632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 2 of 5)	intron (NM_030249, intron 2 of 5)	16421.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	29.48	21.38	46.78	38.21	21.68	37.32	21.26	46.99	37.76	35.15	41.71	22.24
Merged-chr13-21531013-3	chr13	21530825	21531025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001251834, intron 1 of 1)	CpG	189.0	NM_139141	93681.0	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	19.79	27.67	43.35	49.07	29.05	26.97	63.11	32.05	24.98	30.13	35.17	27.88
Merged-chr4-135182054-3	chr4	135181973	135182173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61428.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	54.92	48.8	59.9	55.5	36.0	73.38	74.41	52.71	39.73	61.76	49.75	53.26
Merged-chr2-49452981-3	chr2	49452879	49453079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172663, intron 1 of 13)	intron (NM_172663, intron 1 of 13)	1493.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	65.41	78.98	80.43	114.63	83.46	82.16	56.8	88.26	134.93	108.96	130.14	63.28
Merged-chr9-66131626-3	chr9	66131442	66131642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4931.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	19.79	12.58	30.8	15.69	19.64	21.01	4.65	33.87	14.95	23.1	25.63	14.1
Merged-chr5-3490566-3	chr5	3490463	3490663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-53270.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	42.4	34.21	51.34	56.71	60.55	58.01	39.2	52.15	64.12	61.26	89.94	34.77
Merged-chr16-55966374-3	chr16	55966312	55966512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024218, exon 1 of 6)	5' UTR (NM_024218, exon 1 of 6)	137.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	40.38	51.56	51.91	63.15	48.68	57.7	42.85	37.74	76.71	60.75	59.8	41.98
Merged-chr15-36609142-3	chr15	36609057	36609257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008774)	promoter-TSS (NM_008774)	-184.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	252.78	282.47	256.14	267.46	281.87	350.26	242.82	254.1	405.77	391.64	480.37	246.85
Merged-chr11-50038980-3	chr11	50038899	50039099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	13668.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	39.98	27.17	52.48	34.19	43.77	51.43	28.9	39.31	49.76	49.71	42.71	25.06
Merged-chr9-116084216-3	chr9	116084113	116084313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	91150.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	48.46	61.37	53.05	67.17	63.0	63.97	37.2	65.1	74.74	54.23	69.85	43.54
Merged-chr5-90892848-1	chr5	90892748	90892948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_008176, exon 4 of 4)	3' UTR (NM_008176, exon 4 of 4)	1603.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	15.75	9.06	0.0	4.42	5.73	10.03	2.66	0.42	3.15	9.54	2.51	1.57
Merged-chr2-27411903-3	chr2	27411818	27412018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15690.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	27.46	18.36	34.8	24.53	37.23	20.7	19.27	25.43	32.45	24.1	32.66	14.1
Merged-chr3-58583227-1	chr3	58583127	58583327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040396, intron 1 of 5)	intron (NM_001040396, intron 1 of 5)	6591.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	18.57	14.09	9.7	6.03	3.27	0.94	1.66	0.5	1.97	2.01	0.5	0.63
Merged-chrX-20931577-3	chrX	20931483	20931683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008823)	promoter-TSS (NM_008823)	-28.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	30.69	28.17	28.52	23.73	45.0	45.47	32.22	40.43	54.29	38.16	67.33	16.29
Merged-chr17-15826232-2	chr17	15826137	15826337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178615, exon 1 of 3)	5' UTR (NM_178615, exon 1 of 3)	349.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	35.13	35.97	45.64	43.44	38.05	21.95	24.91	44.13	35.21	33.14	49.24	35.71
Merged-chr18-76238806-1	chr18	76238706	76238906	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2895.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	1.62	1.01	1.14	0.8	2.05	2.2	0.66	1.49	30.29	26.61	7.54	2.19
Merged-chr15-64185393-1	chr15	64185293	64185493	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	Lx9|LINE|L1	-124945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.21	0.0	0.57	0.0	0.82	1.25	1.0	0.06	24.98	30.63	31.66	18.17
Merged-chr17-35126444-3	chr17	35126343	35126543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033477)	promoter-TSS (NM_033477)	41.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	24.63	24.15	24.53	15.69	22.09	33.24	20.93	15.2	30.49	31.13	39.19	21.93
Merged-chr2-79255002-4	chr2	79254934	79255134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010576)	promoter-TSS (NM_010576)	-392.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	121.95	139.09	171.14	119.45	111.69	127.31	121.57	86.94	180.56	137.07	170.84	82.08
Merged-chr1-74505930-3	chr1	74505839	74506039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	-118.0	NM_001310662	319651.0	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	179.69	167.77	194.53	158.87	238.1	242.39	136.52	177.42	210.65	198.33	247.22	138.46
Merged-chr2-164455049-3	chr2	164454944	164455144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5927.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	121.95	122.24	124.36	74.41	129.69	170.9	83.37	90.51	125.49	149.13	127.63	75.18
Merged-chr13-113618504-3	chr13	113618423	113618623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	41.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	100.55	105.14	119.8	74.41	132.96	175.29	127.22	116.22	192.75	199.34	230.14	103.06
Merged-chr2-132102876-3	chr2	132102790	132102990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	42218.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	76.32	65.15	46.78	32.98	40.09	76.83	38.53	60.95	58.22	75.32	49.75	40.1
Merged-chr3-121693464-3	chr3	121693384	121693584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22721.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	24.23	14.84	34.23	28.15	40.91	26.97	30.89	43.88	44.06	43.68	41.2	21.62
Merged-chr10-67097095-5	chr10	67096915	67097115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-27.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	16.96	17.1	18.83	10.46	18.41	32.61	25.24	23.19	25.96	29.62	29.65	21.3
Merged-chr6-87542148-3	chr6	87542058	87542258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8899.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	118.72	102.62	148.89	130.71	119.87	128.88	122.24	141.22	141.22	129.04	177.88	110.58
Merged-chr10-118709844-3	chr10	118709738	118709938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153313.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	50.07	59.61	100.4	78.83	70.37	128.88	138.52	104.61	126.86	103.43	143.71	71.74
Merged-chr15-98985367-1	chr15	98985267	98985467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-598.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	18.17	16.35	22.82	16.89	13.91	18.5	13.62	9.81	27.34	21.09	19.09	15.35
Merged-chr8-120589291-3	chr8	120589200	120589400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-225.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	315.77	266.12	302.91	298.03	348.97	422.38	314.9	306.14	359.74	441.85	477.36	242.78
Merged-chr17-88118943-3	chr17	88118860	88119060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6552.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	45.23	30.94	61.04	74.41	58.91	66.79	54.14	59.52	66.48	68.29	84.92	41.35
Merged-chr6-134983693-3	chr6	134983592	134983792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	1691.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	35.53	37.73	36.51	47.06	52.77	69.3	30.89	54.79	49.57	43.18	64.82	37.28
Merged-chr1-174040951-3	chr1	174040850	174041050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146717)	promoter-TSS (NM_146717)	-983.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	114.27	101.37	77.01	104.17	125.19	150.51	109.62	103.18	134.93	123.52	141.7	80.51
Merged-chr14-14345715-3	chr14	14345602	14345802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-793.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	176.46	207.26	201.94	185.41	152.6	198.81	135.19	160.29	234.26	233.98	266.32	197.67
Merged-chrX-93889544-3	chrX	93889441	93889641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57446.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	29.48	34.96	31.95	45.45	44.59	50.17	49.83	53.41	65.3	63.77	113.06	47.93
Merged-chr17-65931163-2	chr17	65931057	65931257	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	20030.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	8.48	7.04	4.56	4.02	24.14	22.26	15.94	26.1	30.29	30.13	48.74	36.65
Merged-chr7-140128058-3	chr7	140127962	140128162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153783, intron 3 of 6)	intron (NM_153783, intron 3 of 6)	2377.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	41.19	16.35	43.35	55.91	36.41	28.85	37.2	51.36	24.39	25.11	35.17	21.3
Merged-chr18-62180026-3	chr18	62179933	62180133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007420)	promoter-TSS (NM_007420)	-52.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	239.45	257.82	219.63	223.22	208.23	297.89	171.4	193.82	276.15	255.57	290.43	158.83
Merged-chr17-35739784-3	chr17	35739699	35739899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32651.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	52.09	64.89	38.79	33.38	27.82	71.49	41.85	52.12	47.6	53.73	42.71	24.12
Merged-chr6-42339428-3	chr6	42339303	42339503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10425.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	28.67	19.87	45.64	50.68	22.5	25.4	27.9	45.65	34.81	20.08	36.18	19.74
Merged-chr10-77565965-3	chr10	77565869	77566069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008404)	TTS (NM_008404)	-15686.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	34.73	61.62	22.25	26.55	19.64	53.93	13.95	24.87	45.63	50.71	58.79	28.82
Merged-chr3-94612472-3	chr3	94612371	94612571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011656)	TTS (NM_011656)	-29755.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	25.44	32.2	38.79	35.8	45.82	27.91	31.22	57.9	43.27	21.59	58.29	28.51
Merged-chr3-108840278-1	chr3	108840178	108840378	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011504, intron 1 of 18)	CpG	224.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	33.52	35.47	35.37	33.38	33.14	24.15	27.24	32.1	38.55	67.78	50.25	33.83
Merged-chr1-163403737-3	chr1	163403637	163403837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132627)	promoter-TSS (NR_132627)	-68.0	NM_178883	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	33.92	34.21	37.65	47.86	64.23	59.58	52.15	75.67	64.51	69.79	129.14	37.59
Merged-chr4-123996006-3	chr4	123995901	123996101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78568.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	42.4	44.77	65.6	54.7	64.23	56.13	49.16	62.33	50.94	68.29	87.43	47.62
Merged-chr6-108829907-3	chr6	108829818	108830018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	1277.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	31.5	26.91	40.5	20.11	35.59	49.54	37.87	43.63	56.25	39.16	83.91	41.04
Merged-chr2-125859112-3	chr2	125859021	125859221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009939)	promoter-TSS (NM_009939)	12.0	NM_175154	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	74.7	86.27	100.4	110.2	98.59	113.51	61.12	98.58	140.04	104.44	157.78	81.76
Merged-chr11-48871480-3	chr11	48871386	48871586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008326)	promoter-TSS (NM_008326)	-66.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	37.96	26.41	34.23	21.32	16.36	29.79	13.29	23.89	43.07	24.1	27.64	23.18
Merged-chr9-123021307-3	chr9	123021246	123021446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	20.0	NM_001164823	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	50.07	56.09	62.18	82.05	41.32	51.43	29.9	59.97	65.69	81.84	86.43	40.41
Merged-chr6-115037876-3	chr6	115037773	115037973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026894)	promoter-TSS (NM_026894)	1.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	38.36	29.93	31.95	26.14	44.59	47.66	25.58	36.87	28.32	40.67	50.25	21.93
Merged-chr13-52031613-3	chr13	52031463	52031663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65178.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	24.63	23.14	21.68	29.36	31.09	24.15	33.22	26.44	49.57	43.68	50.75	33.83
Merged-chr15-38535540-3	chr15	38535458	38535658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16292.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	32.71	29.68	42.78	13.27	69.14	70.55	33.22	57.95	74.54	54.73	61.3	43.86
Merged-chr14-54405444-3	chr14	54405344	54405544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	4028.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	47.65	26.16	33.09	28.96	50.32	39.82	59.79	58.04	43.07	39.67	21.61	15.98
Merged-chr2-72838228-3	chr2	72838129	72838329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24512.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	45.23	52.82	62.75	47.86	27.82	56.44	52.48	32.58	89.49	113.48	97.48	53.26
Merged-chr3-79531915-3	chr3	79531815	79532015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	35764.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	138.5	106.9	150.03	151.63	152.6	168.7	154.79	173.47	159.12	171.22	193.96	138.78
Merged-chr17-12960601-3	chr17	12960497	12960697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009338, intron 1 of 8)	CpG	128.0	NM_009338	110460.0	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	54.92	85.52	59.9	93.71	84.68	123.23	137.52	93.79	80.05	97.91	84.42	80.2
Merged-chr7-128063485-3	chr7	128063384	128063584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 1 of 29)	intron (NM_008401, intron 1 of 29)	844.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	41.19	35.47	71.88	85.27	64.23	60.52	64.77	76.09	42.09	39.16	41.71	42.92
Merged-chr16-85285579-2	chr16	85285486	85285686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111879.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	43.21	14.84	72.45	69.98	1.64	4.08	2.66	3.93	50.75	36.65	108.03	52.63
Merged-chr8-27174705-3	chr8	27174598	27174798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-52.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	69.86	48.8	58.76	59.12	67.91	90.94	55.14	52.65	81.04	68.29	80.4	42.6
Merged-chr1-165634594-3	chr1	165634490	165634690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347128)	promoter-TSS (NM_001347128)	-49.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	226.93	172.05	222.48	213.17	234.01	246.15	197.64	271.8	212.42	188.29	359.78	160.08
Merged-chr15-93337086-3	chr15	93337056	93337256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-221.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	80.36	66.15	26.24	50.68	76.09	97.83	69.76	54.95	78.48	109.46	108.54	39.47
Merged-chr11-32619693-3	chr11	32619594	32619794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22861.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	18.98	18.61	35.37	27.75	14.73	42.02	21.26	33.25	37.37	26.11	42.21	22.87
Merged-chr2-27714378-3	chr2	27714284	27714484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	3801.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	32.3	35.21	45.64	42.63	62.18	71.49	56.14	56.16	60.19	53.73	71.35	49.18
Merged-chr15-33083217-3	chr15	33083127	33083327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018755)	promoter-TSS (NM_018755)	98.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	35.94	34.21	35.37	39.82	49.5	47.04	46.84	57.06	32.85	32.64	60.8	43.23
Merged-chr12-69423010-3	chr12	69422909	69423109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50859.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	37.15	26.41	51.91	38.21	46.23	49.54	42.52	58.91	44.84	20.08	38.69	18.48
Merged-chr10-53434872-3	chr10	53434776	53434976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24994.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	27.86	12.58	42.21	46.66	29.46	47.98	43.51	69.22	46.42	33.64	72.86	44.48
Merged-chr13-112012850-1	chr13	112012750	112012950	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	144914.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.25	3.42	3.22	33.55	16.62	29.23	44.97	6.69	1.51	3.01	2.82
Merged-chr13-35783800-3	chr13	35783709	35783909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	42407.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	51.28	43.77	56.48	69.18	41.32	56.13	60.46	67.49	63.53	48.2	64.82	45.42
Merged-chr5-138116972-3	chr5	138116873	138117073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011757)	promoter-TSS (NM_011757)	68.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	54.92	52.07	31.38	37.0	54.82	58.32	22.59	38.19	36.39	52.22	42.71	28.82
Merged-chr16-5234154-1	chr16	5234054	5234254	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	533.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	7.27	5.53	4.56	5.23	16.77	12.86	5.31	15.9	12.98	11.55	17.59	8.46
Merged-chr15-78982924-3	chr15	78982828	78983028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024716)	promoter-TSS (NM_001024716)	-128.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	132.04	112.68	128.35	111.01	130.91	156.16	115.6	119.83	151.25	168.71	160.29	68.92
Merged-chr2-30794837-3	chr2	30794724	30794924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_198000)	TTS (NM_198000)	6913.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	30.28	24.15	21.68	16.89	23.32	28.54	24.58	23.02	32.06	41.17	31.15	21.62
Merged-chr4-101647478-3	chr4	101647384	101647584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-299.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	300.42	292.78	296.07	319.75	329.33	449.35	302.61	370.43	398.88	436.83	510.52	234.64
Merged-chr12-16875898-3	chr12	16875796	16875996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19082.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	59.76	45.02	81.0	59.12	83.87	102.54	50.16	64.93	105.23	100.42	143.21	51.69
Merged-chr2-166639243-3	chr2	166639144	166639344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 3 of 39)	intron (NM_177782, intron 3 of 39)	74588.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	81.57	70.68	101.54	92.1	99.41	111.0	63.78	68.58	98.74	89.37	103.51	40.72
Merged-chrX-74281761-3	chrX	74281660	74281860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173547)	promoter-TSS (NM_001173547)	-24.0	NM_027109	69537.0	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	41.99	26.91	32.52	41.83	27.41	30.42	18.27	46.37	24.0	28.62	36.68	26.63
Merged-chr5-109690886-3	chr5	109690810	109691010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131917.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	52.09	67.41	94.13	95.72	67.91	84.66	55.47	76.09	108.77	131.05	164.31	88.65
Merged-chr11-8610037-3	chr11	8609899	8610099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	54536.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	112.26	102.87	95.84	106.18	140.73	168.7	140.84	100.91	143.58	146.61	133.66	67.98
Merged-chr5-31452425-3	chr5	31452340	31452540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	4.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	72.68	70.68	92.98	97.73	67.5	93.44	54.14	70.21	68.64	59.75	68.34	39.78
Merged-chr4-133468252-3	chr4	133468154	133468354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11879.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	85.2	87.28	82.15	51.48	130.5	142.99	76.4	81.84	113.29	99.92	113.06	62.65
Merged-chr18-14682270-3	chr18	14682232	14682432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009280, intron 1 of 10)	CpG	582.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	16.96	16.85	21.11	25.74	26.59	21.64	37.87	25.26	21.83	19.58	18.09	21.93
Merged-chr1-191281372-3	chr1	191281256	191281456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36762.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	90.85	53.32	81.58	87.68	117.82	109.75	85.7	98.38	159.12	162.68	205.01	92.1
Merged-chr2-84059457-3	chr2	84059349	84059549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118223.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	44.82	47.04	47.92	41.83	78.55	83.72	76.73	77.24	72.77	85.36	76.38	46.68
Merged-chr8-22698203-3	chr8	22698097	22698297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8386.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	35.53	33.7	43.35	21.72	51.96	68.05	42.52	53.52	44.65	51.21	60.8	26.31
Merged-chr14-66189035-3	chr14	66188925	66189125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 4 of 30)	intron (NM_001162366, intron 4 of 30)	24799.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	21.8	17.61	17.11	21.72	25.36	23.2	14.95	22.85	34.22	28.12	28.64	20.05
Merged-chr1-184480827-3	chr1	184480738	184480938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76853.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	23.02	12.58	20.54	23.73	45.82	17.56	27.57	50.19	29.5	27.11	44.22	23.81
Merged-chr7-19326007-3	chr7	19325870	19326070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15925.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	71.07	64.39	80.43	46.25	76.5	79.02	49.16	66.34	74.94	52.72	74.37	52.63
Merged-chr12-3913055-3	chr12	3912948	3913148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	21304.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	40.38	22.64	38.79	31.77	32.32	30.1	42.52	52.07	36.39	23.1	34.67	15.98
Merged-chr2-70885862-3	chr2	70885761	70885961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-60381.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	62.59	60.12	79.86	78.43	89.59	93.44	61.12	101.33	72.77	54.73	77.38	65.79
Merged-chr16-55822008-5	chr16	55821843	55822043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159394, exon 1 of 12)	exon (NM_001159394, exon 1 of 12)	195.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	225.72	235.68	102.68	69.58	139.91	298.21	83.71	44.13	251.17	313.82	200.49	82.39
Merged-chr5-93198378-3	chr5	93198278	93198478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	8117.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	34.73	25.91	20.54	30.97	34.77	31.98	21.26	44.33	36.78	28.62	31.15	21.3
Merged-chr3-14880534-3	chr3	14880445	14880645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5724.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	87.62	84.76	64.46	74.0	75.28	88.11	59.79	71.41	107.39	89.37	92.96	40.1
Merged-chr6-131353731-3	chr6	131353642	131353842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34708.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	36.75	38.48	22.82	46.66	26.59	28.85	22.26	42.06	31.08	37.16	46.73	32.58
Merged-chr7-43313254-3	chr7	43313153	43313353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	47.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	148.19	108.16	127.21	137.95	159.55	160.24	119.58	136.57	150.86	164.19	174.36	77.69
Merged-chr4-93335523-3	chr4	93335428	93335628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	-17.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	43.21	58.86	34.8	55.5	68.73	50.49	74.74	69.7	55.86	74.81	60.8	41.04
Merged-chr5-64803202-3	chr5	64803116	64803316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-307.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	148.19	157.2	157.45	146.4	127.64	139.85	145.16	126.81	137.48	151.64	179.89	77.38
Merged-chr2-180695371-3	chr2	180695241	180695441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	-3293.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	30.28	27.67	30.8	47.06	44.59	54.88	41.52	71.24	25.57	20.59	34.17	22.56
Merged-chr17-87282146-3	chr17	87282022	87282222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028639)	promoter-TSS (NM_028639)	692.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	132.85	117.72	125.5	107.39	110.46	153.34	79.39	141.25	165.41	154.15	189.94	86.15
Merged-chr12-112693627-3	chr12	112693519	112693719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	14779.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	121.95	108.66	121.51	109.8	153.41	156.79	99.98	129.34	152.24	164.19	160.29	95.55
Merged-chr17-24470286-3	chr17	24470167	24470367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025954)	promoter-TSS (NM_025954)	-206.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	169.19	154.69	135.2	164.5	150.96	206.02	116.26	131.58	172.5	213.39	247.22	132.51
Merged-chr6-108098682-3	chr6	108098585	108098785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33640.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	29.07	10.82	14.83	22.93	43.77	24.15	19.93	28.09	38.94	20.08	34.17	19.42
Merged-chr5-104958369-3	chr5	104958277	104958477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	24340.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	103.78	114.7	95.27	117.84	100.64	116.65	117.92	106.79	117.42	152.14	102.51	88.34
Merged-chr7-92886401-3	chr7	92886296	92886496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	11143.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	32.71	46.28	44.5	45.85	49.5	68.67	73.08	56.55	76.51	55.73	73.36	42.92
Merged-chr5-72817852-3	chr5	72817720	72817920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50628.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	39.98	33.96	22.82	22.12	43.77	58.64	49.83	25.96	31.27	22.09	38.69	9.71
Merged-chr1-97661188-3	chr1	97661077	97661277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	499.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	22.61	18.11	26.24	20.91	19.23	20.38	20.26	13.65	21.05	24.1	18.09	12.22
Merged-chr3-88510148-3	chr3	88510048	88510248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6796.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	237.03	183.11	225.9	212.76	297.83	337.09	188.34	231.84	293.07	314.82	342.69	156.32
Merged-chr9-66060126-3	chr9	66060005	66060205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-64.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	119.93	125.26	131.78	128.7	123.55	167.76	103.31	119.52	125.68	127.03	182.9	86.15
Merged-chr16-11174837-3	chr16	11174777	11174977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	1516.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	16.56	10.82	17.68	16.89	16.77	13.17	9.97	9.28	15.14	18.08	15.58	15.66
Merged-chr7-24904272-3	chr7	24904176	24904376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-70.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	166.36	196.95	223.62	202.71	173.87	233.61	183.36	221.61	165.61	175.74	295.46	137.84
Merged-chr17-26533989-3	chr17	26533879	26534079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25507.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	161.11	117.97	196.24	184.61	156.69	203.82	180.7	196.57	171.51	173.23	186.42	134.08
Merged-chr17-13938867-1	chr17	13938767	13938967	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9506.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	1.21	0.5	2.28	1.61	4.09	2.2	8.64	9.7	5.31	2.01	7.03	4.39
Merged-chr15-81860045-3	chr15	81859916	81860116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1690.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	92.47	95.33	97.55	86.07	111.28	111.95	67.1	86.1	137.09	112.47	133.16	106.2
Merged-chr5-3356097-3	chr5	3355988	3356188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12195.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	29.88	9.06	30.8	12.47	41.32	41.39	14.95	19.79	45.24	61.26	34.67	10.65
Merged-chr11-114789346-3	chr11	114789279	114789479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001102615, exon 18 of 20)	exon (NM_001102615, exon 18 of 20)	6513.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	16.96	21.13	30.8	14.48	21.68	29.79	17.94	20.89	22.23	32.13	23.62	20.68
Merged-chr8-120323226-3	chr8	120323115	120323315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94985.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	46.84	30.94	31.38	43.44	45.0	61.15	54.81	74.36	52.32	42.18	53.77	31.01
Merged-chr12-105027894-3	chr12	105027806	105028006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3235.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	83.99	75.71	51.91	57.11	74.87	102.54	50.82	70.18	80.84	85.36	93.96	64.22
Merged-chr2-91395897-1	chr2	91395797	91395997	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175123, intron 2 of 8)	RMER19C|LTR|ERVK	48817.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	2.02	1.51	1.14	3.62	10.23	5.02	1.66	12.48	5.9	2.51	5.53	8.46
Merged-chr12-58538497-3	chr12	58538398	58538598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-269240.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	65.82	61.88	59.9	87.28	76.91	56.44	82.71	91.49	43.66	65.78	54.77	34.77
Merged-chr2-144337914-3	chr2	144337808	144338008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5828.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	14.94	19.87	33.66	16.49	28.64	21.01	14.62	24.53	23.21	24.6	24.12	11.9
Merged-chr2-117249762-3	chr2	117249646	117249846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	7.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	49.67	33.2	55.33	35.39	38.86	52.68	24.25	38.05	52.91	67.78	55.27	40.1
Merged-chr6-65516882-3	chr6	65516783	65516983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73515.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	31.5	24.15	36.51	17.7	13.91	37.94	23.92	18.17	51.14	34.65	39.19	12.53
Merged-chr2-119898485-3	chr2	119898387	119898587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013720, intron 1 of 23)	intron (NM_013720, intron 1 of 23)	1259.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	41.59	42.26	29.66	23.33	47.87	43.59	15.94	26.69	52.32	77.32	60.3	33.83
Merged-chr17-84342591-3	chr17	84342507	84342707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	LTR40b|LTR|ERVL	123601.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	44.42	46.03	60.47	64.75	30.68	24.77	27.57	43.74	28.13	17.07	43.21	20.99
Merged-chr7-105762970-3	chr7	105762859	105763059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10724.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	33.52	29.43	35.94	28.56	33.55	52.99	16.61	38.36	77.1	70.29	94.97	42.29
Merged-chr19-32223926-3	chr19	32223829	32224029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-12916.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	172.82	110.92	128.92	135.14	230.73	301.03	200.3	185.78	218.91	202.85	200.49	97.11
Merged-chr8-80879859-3	chr8	80879773	80879973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	606.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	30.28	25.66	25.67	33.38	28.64	22.89	15.94	27.84	24.98	19.58	25.63	17.86
Merged-chr17-17587897-2	chr17	17587799	17587999	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36590.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	18.98	25.91	19.4	19.71	18.0	21.95	10.96	21.93	21.83	17.57	26.63	10.02
Merged-chr6-42421695-3	chr6	42421606	42421806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12829.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	89.64	86.27	84.43	88.08	86.73	96.89	68.1	85.26	98.54	103.94	95.97	67.35
Merged-chr14-25481087-3	chr14	25480977	25481177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21892.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	88.84	52.57	87.28	94.11	69.14	84.04	80.39	93.17	68.25	53.73	104.52	47.3
Merged-chr4-41640291-3	chr4	41640204	41640404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027147)	promoter-TSS (NM_027147)	-2.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	100.14	97.09	93.55	108.59	89.18	97.83	109.28	87.51	140.44	133.56	149.74	67.67
Merged-chr17-47273141-3	chr17	47273053	47273253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	42923.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	40.78	33.45	46.21	40.22	40.09	49.23	16.94	29.64	43.66	61.26	39.19	19.11
Merged-chr19-8819934-3	chr19	8819851	8820051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027412)	promoter-TSS (NM_027412)	550.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	148.6	125.76	116.37	124.28	152.6	144.87	91.01	101.38	185.08	162.18	207.02	109.64
Merged-chr15-89591883-3	chr15	89591783	89591983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026817)	promoter-TSS (NM_026817)	40.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	8.08	17.61	20.54	24.13	24.96	16.93	33.55	21.36	29.9	25.61	49.24	32.27
Merged-chr11-101658494-3	chr11	101658399	101658599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7042.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	31.5	35.47	39.93	30.16	27.0	50.17	34.88	17.83	32.85	33.14	37.69	16.29
Merged-chr5-115513443-1	chr5	115513343	115513543	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	ID_B1|SINE|B4	6767.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	2.42	1.01	4.56	4.83	60.14	65.85	37.87	56.5	2.56	3.01	2.01	6.89
Merged-chr3-127020332-3	chr3	127020236	127020436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 14 of 47)	intron (NM_001327938, intron 14 of 47)	-21884.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	23.82	19.37	35.37	32.18	17.59	17.56	29.9	34.21	26.36	20.08	40.7	31.01
Merged-chr12-84172450-3	chr12	84172345	84172545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	21570.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	26.25	40.24	43.35	28.56	29.05	43.27	18.6	32.19	42.68	44.19	33.67	24.75
Merged-chr1-172500784-3	chr1	172500681	172500881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	CpG	535.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	29.07	16.85	23.39	23.73	17.59	35.12	35.87	27.0	49.76	45.69	46.23	26.0
Merged-chr2-72366703-3	chr2	72366579	72366779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80978.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	68.65	66.15	79.29	93.71	83.87	105.36	89.69	97.74	94.02	111.97	98.49	77.06
Merged-chr15-84994670-3	chr15	84994569	84994769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6698.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	40.78	38.23	58.76	59.53	53.59	50.8	59.46	79.91	73.36	62.76	70.85	57.01
Merged-chr12-76369545-3	chr12	76369468	76369668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	-8.0	NM_028356	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	133.25	119.73	140.9	111.41	105.14	129.82	132.2	109.77	145.94	143.6	208.53	77.06
Merged-chr18-39650556-3	chr18	39650458	39650658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122939.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	39.57	37.48	53.05	31.77	51.14	79.96	52.15	51.45	62.55	63.27	66.83	27.57
Merged-chr2-18056628-3	chr2	18056541	18056741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149308, intron 1 of 9)	CpG	913.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	111.04	103.88	105.53	85.67	115.78	123.86	67.43	101.44	147.52	146.61	178.88	66.41
Merged-chr2-132595939-3	chr2	132595848	132596048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2248.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	41.19	27.17	22.25	32.18	73.64	78.39	30.23	52.37	46.03	55.23	47.23	38.85
Merged-chr5-43354618-3	chr5	43354554	43354754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119300.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	19.79	12.58	42.21	19.71	35.18	27.91	50.82	53.27	58.81	35.65	48.24	40.1
Merged-chr8-124020949-1	chr8	124020849	124021049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001357315, exon 1 of 5)	5' UTR (NM_001357315, exon 1 of 5)	107.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	14.94	12.83	2.28	8.85	15.14	15.37	7.31	10.01	20.85	16.57	25.63	10.34
Merged-chr18-5740603-3	chr18	5740461	5740661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360982, intron 2 of 7)	L1MD2|LINE|L1	147914.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	46.84	58.86	43.93	35.8	51.14	102.54	54.48	34.26	78.87	59.75	119.59	41.35
Merged-chr5-45719293-3	chr5	45719196	45719396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027993)	TTS (NR_027993)	8282.0	NR_027993	100041576.0	Mm.451765	NR_027993	ENSMUSG00000015882	Gm3414	-	predicted gene 3414	ncRNA	21.0	18.86	59.33	34.59	56.05	25.71	36.87	68.05	53.11	40.67	50.25	37.91
Merged-chr1-144250611-3	chr1	144250526	144250726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1522.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	48.05	42.76	39.36	49.07	32.32	25.4	38.2	52.85	35.01	37.66	33.67	40.1
Merged-chr5-53995393-3	chr5	53995259	53995459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3164.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	136.08	104.13	120.37	86.47	141.55	178.42	92.68	84.9	186.07	164.19	222.6	73.62
Merged-chr12-117476770-3	chr12	117476672	117476872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-39707.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	27.86	23.14	24.53	16.09	29.46	21.32	17.94	16.6	49.37	45.69	42.21	17.86
Merged-chr1-194992765-3	chr1	194992666	194992866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15807.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	14.54	21.88	25.1	23.73	26.59	24.77	26.91	34.18	21.64	20.59	27.13	23.18
Merged-chr9-113930905-3	chr9	113930800	113931000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083319)	promoter-TSS (NM_001083319)	-34.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	274.98	324.47	266.4	282.75	285.15	380.05	272.05	249.95	383.15	434.32	499.47	221.79
Merged-chr13-3634078-3	chr13	3633998	3634198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267724)	promoter-TSS (NM_001267724)	66.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	48.46	55.08	85.0	70.79	73.64	75.88	66.1	95.13	85.76	56.24	112.05	42.6
Merged-chr4-6453962-5	chr4	6453858	6454058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	CpG	313.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	14.54	15.09	14.26	10.05	18.0	24.15	12.62	23.89	33.83	20.59	34.17	24.12
Merged-chr2-34871016-3	chr2	34870904	34871104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080554)	promoter-TSS (NM_080554)	-42.0	NM_080554	66998.0	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	85.2	103.88	74.16	90.9	107.19	123.86	66.1	58.15	126.08	129.54	131.65	93.67
Merged-chr8-71405990-3	chr8	71405874	71406074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172756)	promoter-TSS (NM_172756)	-38.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	51.69	47.54	75.87	57.92	76.5	74.0	32.22	54.98	83.0	99.92	88.44	54.51
Merged-chr17-12916285-3	chr17	12916176	12916376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013686)	promoter-TSS (NM_013686)	-53.0	NM_001290712	21454.0	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	268.12	332.02	355.39	324.17	337.1	433.67	311.91	417.2	346.96	385.62	512.03	242.47
Merged-chr2-75981823-3	chr2	75981659	75981859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030188, exon 1 of 1)	5' UTR (NM_030188, exon 1 of 1)	208.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	25.44	16.1	24.53	17.29	36.41	30.73	13.62	23.78	56.45	57.24	45.73	39.16
Merged-chr4-32564565-3	chr4	32564478	32564678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	7084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	113.06	75.21	163.72	164.1	157.91	120.41	232.85	211.91	125.49	73.81	155.27	79.26
Merged-chr17-24463977-3	chr17	24463892	24464092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6481.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	38.76	36.72	69.6	44.24	40.5	48.29	32.55	42.39	23.21	16.57	33.16	15.98
Merged-chr18-4256595-3	chr18	4256481	4256681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	27.05	18.61	20.54	18.5	38.86	38.88	28.57	45.0	31.27	28.62	32.16	21.62
Merged-chr5-105568285-3	chr5	105568209	105568409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48838.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	37.15	35.97	58.19	39.42	40.5	31.67	31.56	38.07	58.81	30.13	54.77	24.12
Merged-chr11-70372651-3	chr11	70372557	70372757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-20626.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	22.61	31.44	23.39	24.13	47.05	38.88	19.6	38.07	27.34	36.65	34.17	20.68
Merged-chr13-102695480-5	chr13	102695390	102695590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	1932.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	14.94	29.93	32.52	27.75	38.86	21.64	37.87	32.44	39.73	43.68	37.69	39.16
Merged-chr4-130919926-3	chr4	130919828	130920028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6594.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	16.56	7.8	22.25	14.88	17.18	31.36	19.6	43.74	34.81	18.58	21.61	20.99
Merged-chr8-117526354-3	chr8	117526250	117526450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	28075.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	35.13	22.64	41.07	25.34	70.77	49.54	34.88	59.08	40.32	32.64	53.77	29.13
Merged-chr1-51938578-3	chr1	51938487	51938687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22609.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	50.07	44.02	82.15	100.55	59.73	46.41	48.83	54.2	68.05	51.21	93.46	52.32
Merged-chr2-27740346-3	chr2	27740241	27740441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29758.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	256.01	270.9	280.66	248.16	282.28	349.95	266.07	283.71	452.97	474.49	505.0	249.67
Merged-chr7-127470976-3	chr7	127470884	127471084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-630.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	55.72	65.65	50.77	57.51	74.87	94.7	44.18	42.81	92.64	92.89	100.5	61.4
Merged-chr19-4163355-3	chr19	4163236	4163436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021485)	promoter-TSS (NM_021485)	47.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	50.07	32.95	46.78	41.02	26.18	36.37	33.88	28.23	47.01	32.13	28.64	29.76
Merged-chr11-118419059-3	chr11	118418937	118419137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267592)	promoter-TSS (NM_001267592)	81.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	141.73	123.5	92.98	84.46	146.05	164.31	82.05	88.23	174.07	173.23	159.79	87.09
Merged-chr3-9249869-3	chr3	9249747	9249947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-720.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	95.7	97.34	98.12	104.17	118.23	142.36	85.04	106.63	119.0	90.88	136.17	62.65
Merged-chr10-94035953-3	chr10	94035863	94036063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304572)	promoter-TSS (NM_001304572)	-38.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	173.63	165.25	142.04	159.27	187.78	222.95	152.8	168.84	171.12	214.4	196.47	111.84
Merged-chr14-61682372-3	chr14	61682299	61682499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-26.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	156.27	165.0	112.95	154.44	160.37	213.54	144.16	91.93	203.18	254.07	218.08	89.59
Merged-chr9-70257694-3	chr9	70257627	70257827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	50377.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	16.96	24.4	26.81	23.33	29.05	25.4	29.9	21.62	22.62	21.09	27.13	18.48
Merged-chr16-13672618-3	chr16	13672451	13672651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	693.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	37.96	60.12	49.06	55.5	37.23	55.82	59.46	45.48	75.13	79.33	60.8	41.98
Merged-chr7-132358985-3	chr7	132358884	132359084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41756.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	81.97	78.48	130.06	123.88	78.14	89.05	108.95	154.35	107.79	107.45	175.37	98.68
Merged-chr3-101010828-3	chr3	101010743	101010943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 6 of 8)	intron (NM_001167906, intron 6 of 8)	18652.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	14.54	14.09	21.68	29.76	28.23	26.97	20.59	26.47	19.28	17.57	28.64	19.42
Merged-chr7-43443503-3	chr7	43443395	43443595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-577.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	34.73	34.96	38.79	39.42	41.73	66.16	35.87	51.65	58.81	65.78	99.49	33.83
Merged-chr2-128127462-3	chr2	128127365	128127565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	-110.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	157.48	137.33	143.18	162.49	171.41	192.22	158.11	151.82	204.16	168.21	238.68	106.51
Merged-chr1-52113804-3	chr1	52113634	52113834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5704.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	130.02	112.18	96.41	79.23	114.14	124.8	82.71	89.75	109.95	122.01	132.15	74.24
Merged-chr7-89423323-2	chr7	89423223	89423423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2983.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	20.59	13.08	22.25	23.73	43.77	26.34	24.58	35.44	2.75	6.03	2.51	3.13
Merged-chr16-50552220-4	chr16	50552110	50552310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 4 of 5)	MLTR11B|LTR|ERVK	23708.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	22.21	22.64	26.24	43.44	20.05	14.11	24.58	42.0	15.54	22.09	27.13	17.54
Merged-chr10-8021527-3	chr10	8021425	8021625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-65402.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	29.07	15.34	30.8	45.45	36.41	31.04	23.92	47.55	32.26	36.65	57.28	25.37
Merged-chr2-26140531-3	chr2	26140409	26140609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256522)	promoter-TSS (NM_001256522)	-3.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	98.53	106.4	100.4	94.92	68.32	124.17	75.73	67.09	146.93	168.71	139.69	110.27
Merged-chr16-20424316-3	chr16	20424191	20424391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	2103.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	24.23	30.94	59.33	28.56	37.64	48.29	27.24	33.48	43.66	39.67	40.7	19.74
Merged-chr1-131072636-1	chr1	131072536	131072736	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	25207.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.65	4.02	2.28	2.41	65.46	76.83	45.84	51.45	4.13	11.05	5.53	2.51
Merged-chr11-95859279-2	chr11	95859174	95859374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045187, intron 1 of 1)	CpG	457.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	23.42	22.89	27.95	16.09	27.82	31.98	16.28	13.09	38.55	43.68	34.67	26.0
Merged-chr8-11038553-3	chr8	11038465	11038665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30135.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	23.82	19.62	51.34	26.55	38.46	36.06	37.87	56.94	35.01	25.11	54.27	33.21
Merged-chr18-35771438-3	chr18	35771343	35771543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019912)	promoter-TSS (NM_019912)	-116.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	86.41	85.27	74.16	63.95	92.05	104.11	63.11	65.24	114.87	114.48	122.1	73.3
Merged-chr1-136140275-3	chr1	136140170	136140370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	8880.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	56.53	52.32	45.07	57.11	54.82	69.3	69.42	64.43	69.43	83.35	72.36	42.6
Merged-chr14-46882213-1	chr14	46882113	46882313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-752.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	13.33	11.32	6.28	10.05	11.45	7.53	9.3	9.98	8.46	14.06	5.02	14.72
Merged-chr4-117120551-3	chr4	117120457	117120657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024078, exon 7 of 7)	non-coding (NR_024078, exon 7 of 7)	5168.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	159.5	116.46	172.85	155.65	208.64	267.16	188.34	187.4	168.76	206.37	192.45	102.44
Merged-chr13-52600468-3	chr13	52600337	52600537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	3555.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	48.46	54.58	62.75	23.33	55.64	112.26	67.1	51.36	87.72	67.78	67.84	20.36
Merged-chr14-14702825-3	chr14	14702731	14702931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-194.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	168.38	173.55	158.02	191.45	207.01	189.08	165.42	198.11	256.68	211.89	350.73	153.19
Merged-chr11-69554940-3	chr11	69554825	69555025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	5312.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	73.09	71.69	87.28	70.38	84.68	103.17	68.43	61.49	104.44	124.52	89.44	57.01
Merged-chr3-103207668-3	chr3	103207554	103207754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35999.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	33.92	33.2	45.07	38.61	60.55	58.95	46.5	52.23	68.64	52.72	95.47	27.57
Merged-chr9-78428356-3	chr9	78428261	78428461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14876.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	41.59	22.89	34.23	43.84	44.59	46.1	36.21	57.34	44.25	43.18	58.79	35.4
Merged-chr4-53155691-3	chr4	53155612	53155812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4183.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	189.38	135.57	255.56	186.22	227.05	238.0	236.51	282.23	246.84	260.09	337.67	144.1
Merged-chr8-22757588-3	chr8	22757496	22757696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008872)	promoter-TSS (NM_008872)	-126.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	29.07	29.43	33.66	26.95	63.41	58.64	46.5	57.39	45.43	47.2	50.75	31.01
Merged-chr11-29846788-1	chr11	29846688	29846888	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 10 of 41)	Lx2|LINE|L1	-21120.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.04	2.26	2.28	3.62	6.55	4.08	13.29	11.02	4.92	5.52	10.55	3.45
Merged-chr14-56811897-3	chr14	56811791	56811991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253753)	promoter-TSS (NM_001253753)	-98.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	121.95	115.7	122.65	111.81	122.32	140.17	133.86	60.79	158.33	196.32	188.93	79.26
Merged-chr1-97659575-3	chr1	97659477	97659677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133825, intron 1 of 2)	intron (NM_133825, intron 1 of 2)	2099.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	56.53	34.21	44.5	54.7	58.91	54.88	49.83	85.21	65.3	42.68	89.44	34.15
Merged-chr10-13304867-3	chr10	13304755	13304955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19434.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	67.03	74.2	49.06	43.04	68.32	105.05	61.78	66.73	106.8	103.94	67.33	45.42
Merged-chr19-8798593-3	chr19	8798496	8798696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-39.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	107.01	84.76	81.0	77.62	110.05	133.9	81.71	81.06	133.16	127.03	160.79	83.64
Merged-chr5-90224058-3	chr5	90223937	90224137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033310)	promoter-TSS (NM_001033310)	-41.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	218.05	205.75	231.03	259.82	229.92	279.39	205.95	256.54	328.27	370.55	422.59	225.24
Merged-chr18-32857646-3	chr18	32857575	32857775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20388.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	16.96	11.82	33.66	30.16	18.41	22.58	27.9	33.87	21.44	19.58	38.19	18.17
Merged-chr4-138973235-1	chr4	138973135	138973335	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_029857, exon 1 of 17)	5' UTR (NM_029857, exon 1 of 17)	330.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	8.88	17.61	5.7	5.63	13.5	21.01	11.63	11.72	18.29	20.08	13.06	9.71
Merged-chr5-137786811-3	chr5	137786718	137786918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-117.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	150.21	141.11	120.37	100.15	175.51	192.85	79.39	82.35	184.89	227.96	163.31	89.91
Merged-chr4-43040368-3	chr4	43040268	43040468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-67.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	219.66	219.33	243.58	213.17	257.74	291.62	217.9	225.9	247.04	293.73	366.31	151.62
Merged-chr14-16380313-3	chr14	16380205	16380405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	15099.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	35.94	26.41	29.09	34.59	21.68	30.73	29.56	32.58	26.36	31.13	30.15	15.66
Merged-chr6-88045265-3	chr6	88045153	88045353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293652)	promoter-TSS (NM_001293652)	17.0	NM_001293652	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	90.85	105.14	65.6	71.59	69.96	103.17	38.86	67.74	118.6	115.48	132.66	65.79
Merged-chr17-56325846-3	chr17	56325722	56325922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357909)	promoter-TSS (NM_001357909)	-228.0	NM_172132	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	264.08	250.77	322.31	302.45	292.1	386.01	314.9	342.65	421.9	399.68	545.7	245.91
Merged-chr7-27238796-3	chr7	27238711	27238911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133770, intron 5 of 14)	intron (NM_133770, intron 5 of 14)	5798.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	117.91	120.23	132.92	107.79	143.19	169.64	136.52	142.07	156.76	126.53	189.94	95.23
Merged-chr2-180171438-3	chr2	180171339	180171539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-149.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	258.83	267.37	322.88	308.89	288.42	345.87	275.04	304.63	330.83	339.42	406.51	208.95
Merged-chr6-22398574-3	chr6	22398459	22398659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42478.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	32.3	21.63	15.97	35.8	36.0	25.09	30.23	47.38	41.7	37.16	58.79	20.68
Merged-chr5-149051425-1	chr5	149051325	149051525	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001313894, exon 1 of 5)	5' UTR (NM_001313894, exon 1 of 5)	191.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	14.54	16.6	21.68	9.25	14.73	23.83	27.24	22.07	19.28	24.6	25.12	18.17
Merged-chr9-77656059-3	chr9	77655885	77656085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172925, exon 3 of 3)	3' UTR (NM_172925, exon 3 of 3)	19253.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	10.09	16.6	21.11	13.67	13.5	7.84	16.28	18.2	20.65	11.55	8.04	11.59
Merged-chr10-51422737-3	chr10	51422637	51422837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-57875.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	30.69	27.17	27.38	23.73	45.0	55.82	41.52	45.62	45.43	37.66	40.7	31.95
Merged-chr6-125345767-3	chr6	125345663	125345863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011324)	TTS (NM_011324)	-3960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	30.69	17.61	29.66	27.75	42.14	31.67	15.94	33.28	54.68	39.67	62.31	24.12
Merged-chr1-106162791-3	chr1	106162694	106162894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8730.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	27.05	20.12	37.08	20.91	33.14	29.79	27.57	38.3	40.91	40.17	40.7	26.94
Merged-chr8-88636123-3	chr8	88636006	88636206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027840)	promoter-TSS (NM_027840)	22.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	77.93	54.83	111.81	76.42	70.37	81.22	58.79	74.8	82.22	97.41	105.52	69.23
Merged-chr8-120114035-3	chr8	120113962	120114162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-90.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	113.87	152.93	156.31	141.98	167.73	199.12	152.47	146.5	204.36	226.95	237.17	113.72
Merged-chr1-186575882-3	chr1	186575793	186575993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17212.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	123.97	83.76	117.51	143.99	101.87	93.76	117.92	161.27	110.54	78.83	148.73	88.65
Merged-chr6-39725555-3	chr6	39725453	39725653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-90.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	163.54	136.08	155.73	138.76	147.69	223.89	142.5	162.48	216.16	189.8	228.13	124.05
Merged-chr7-110018266-3	chr7	110018144	110018344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362172)	promoter-TSS (NM_001362172)	-7.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	65.82	55.84	58.76	44.64	66.68	60.52	43.85	60.03	74.15	94.9	99.99	49.81
Merged-chr7-55794144-3	chr7	55794026	55794226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360874)	promoter-TSS (NM_001360874)	1.0	NM_001360873	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	80.76	64.39	82.72	69.58	112.09	93.76	53.81	111.98	81.63	77.83	96.98	52.94
Merged-chr4-123928164-3	chr4	123928053	123928253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 5 of 6)	intron (NM_017475, intron 5 of 6)	10720.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	112.66	93.82	126.64	114.22	98.59	132.95	85.7	144.87	161.87	110.46	148.23	98.99
Merged-chr5-43185719-3	chr5	43185642	43185842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-47721.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	43.21	37.48	62.18	61.94	49.09	80.27	72.08	92.78	76.12	73.31	130.14	57.33
Merged-chr9-37093177-2	chr9	37093084	37093284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	54138.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	45.23	38.74	46.78	51.88	41.73	53.31	27.9	50.19	12.98	4.02	4.02	3.76
Merged-chr2-117027381-3	chr2	117027275	117027475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93696.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	11.71	15.85	18.25	18.5	24.96	33.87	52.82	29.78	23.8	22.09	24.12	13.16
Merged-chr5-143579957-3	chr5	143579870	143580070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31264.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	66.63	75.21	88.42	81.24	77.73	81.53	69.42	96.87	102.87	83.85	104.01	86.15
Merged-chr6-121147039-3	chr6	121146940	121147140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16018.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	60.57	48.8	60.47	75.61	40.91	67.42	39.53	66.03	41.89	46.7	77.38	54.2
Merged-chr16-8738991-3	chr16	8738883	8739083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003918)	promoter-TSS (NM_001003918)	-641.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	33.92	36.22	25.67	29.76	46.23	54.56	32.55	50.86	55.86	57.74	80.9	39.16
Merged-chr10-68238944-3	chr10	68238833	68239033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39793.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	35.13	47.04	34.8	41.83	47.05	44.84	24.58	36.79	67.27	57.74	64.82	32.27
Merged-chr7-136308987-3	chr7	136308874	136309074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	40441.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	45.63	46.03	78.15	56.31	43.36	52.99	57.8	64.74	87.72	87.87	91.95	53.26
Merged-chr15-100038685-3	chr15	100038615	100038815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159361)	promoter-TSS (NM_001159361)	51.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	65.01	54.08	45.07	39.42	45.0	46.41	34.88	38.58	47.8	61.76	55.27	37.59
Merged-chr18-34247579-3	chr18	34247452	34247652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-142.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	32.3	35.21	19.97	24.13	21.68	35.75	38.86	20.52	41.3	41.17	45.73	22.87
Merged-chr14-44103900-3	chr14	44103795	44103995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001012766)	TTS (NM_001012766)	1008.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	46.44	36.47	38.79	53.49	42.96	53.62	39.86	41.52	47.01	39.16	70.35	34.15
Merged-chr5-100039020-3	chr5	100038915	100039115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	207.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	129.62	123.5	116.94	113.02	120.28	164.0	108.95	121.51	176.23	150.13	166.32	90.85
Merged-chr2-167352728-3	chr2	167352635	167352835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3557.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	38.36	16.6	58.76	32.18	43.36	45.78	45.51	76.37	53.11	29.62	71.86	41.66
Merged-chr14-52106906-3	chr14	52106794	52106994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2873.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	45.63	23.39	72.45	71.99	49.5	26.65	54.81	75.06	35.99	34.65	54.27	41.98
Merged-chr17-56938968-3	chr17	56938894	56939094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3606.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	54.51	42.01	50.77	44.64	51.96	61.15	29.56	60.81	64.51	83.35	63.82	45.11
Merged-chr6-15846163-3	chr6	15846070	15846270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	125509.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	100.14	116.21	135.77	169.73	121.91	132.64	136.85	158.47	168.96	168.71	244.71	105.88
Merged-chr6-134701033-3	chr6	134700954	134701154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	60114.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	138.5	128.03	132.35	106.18	99.41	118.22	66.43	79.6	109.36	117.99	107.03	55.76
Merged-chr3-13592760-3	chr3	13592668	13592868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	60097.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	37.15	34.46	61.04	80.44	64.64	72.12	88.36	117.39	73.76	69.79	80.4	46.36
Merged-chr7-6170534-3	chr7	6170470	6170670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1943.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	27.86	16.85	31.95	24.13	29.46	18.19	14.28	34.91	27.93	11.55	21.61	17.86
Merged-chr15-88505927-1	chr15	88505827	88506027	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94375.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.25	1.14	0.0	0.0	0.94	0.0	0.03	40.91	26.11	25.63	17.23
Merged-chr18-34861930-1	chr18	34861830	34862030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007913, intron 1 of 1)	intron (NM_007913, intron 1 of 1)	723.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	159.1	214.3	72.45	49.07	106.37	296.01	34.55	15.03	201.21	332.39	110.04	65.47
Merged-chr6-113741622-3	chr6	113741530	113741730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-949.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	34.32	22.89	27.38	51.08	37.64	54.25	30.23	36.62	40.91	54.23	63.82	29.13
Merged-chr18-82526055-3	chr18	82525971	82526171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-28392.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	98.12	75.21	112.38	93.31	123.55	116.96	95.0	142.12	121.16	137.07	202.0	92.1
Merged-chr18-50096747-3	chr18	50096641	50096841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31460.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	54.92	64.39	99.83	90.09	77.73	71.81	109.62	129.76	89.3	68.79	134.16	82.08
Merged-chr10-19033873-3	chr10	19033776	19033976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-18466.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	61.38	42.76	57.05	49.47	67.5	79.96	53.81	53.66	64.71	75.32	67.33	29.13
Merged-chr17-75119639-3	chr17	75119542	75119742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	-59139.0	NM_001331236	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	44.42	51.06	59.9	65.56	35.59	50.49	32.55	54.39	67.46	55.23	75.87	44.17
Merged-chr4-95051602-3	chr4	95051482	95051682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010591, exon 1 of 1)	5' UTR (NM_010591, exon 1 of 1)	640.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	117.5	126.27	78.72	70.79	76.09	90.0	61.78	65.69	69.23	100.92	94.97	51.69
Merged-chr2-60851405-3	chr2	60851308	60851508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	30030.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	46.03	55.84	47.35	54.7	46.64	70.24	47.83	62.55	49.57	65.27	76.38	38.85
Merged-chr4-12009362-3	chr4	12009269	12009469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42795.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	59.76	78.23	84.43	84.86	94.5	123.55	101.31	157.77	115.06	84.86	145.22	76.75
Merged-chr10-19559947-3	chr10	19559848	19560048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32001.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	39.57	17.1	33.09	32.18	39.27	61.15	52.15	43.68	55.07	46.7	46.73	17.86
Merged-chr13-4609205-3	chr13	4609121	4609321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-57.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	91.66	101.62	89.56	112.62	139.1	110.38	106.96	175.6	138.67	128.54	225.61	83.33
Merged-chr19-41381847-3	chr19	41381786	41381986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	3184.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	33.11	41.5	47.92	33.78	62.59	70.24	44.18	60.76	49.17	46.7	51.76	22.87
Merged-chr11-59542569-3	chr11	59542457	59542657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145827)	promoter-TSS (NM_145827)	-129.0	NM_145827	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	103.37	73.95	87.28	71.99	134.19	139.54	140.84	114.7	119.98	145.61	143.71	110.58
Merged-chr7-111082357-4	chr7	111082264	111082464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013507, intron 1 of 21)	CpG	666.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	50.47	38.23	55.33	41.83	42.96	46.1	62.78	52.09	55.47	59.25	59.29	51.38
Merged-chr13-51849035-3	chr13	51848936	51849136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011817)	TTS (NM_011817)	2361.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	102.56	72.44	93.55	85.27	110.05	95.01	103.64	122.1	120.57	113.98	159.29	83.96
Merged-chr15-36496796-3	chr15	36496713	36496913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-22.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	35.53	26.16	47.35	48.67	45.0	45.78	44.18	50.41	62.15	49.71	111.55	34.77
Merged-chr15-67781022-3	chr15	67780896	67781096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	477860.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	128.41	127.52	87.28	97.73	114.14	118.84	50.16	67.65	115.65	147.12	123.11	62.03
Merged-chr7-80209938-3	chr7	80209849	80210049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	11508.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	42.4	54.83	71.31	49.47	42.55	40.45	67.76	64.29	50.35	29.62	41.2	39.16
Merged-chr18-68196096-3	chr18	68196003	68196203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-31843.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	38.76	16.6	57.62	47.46	60.14	32.3	57.8	73.35	43.07	36.15	45.22	40.41
Merged-chr7-3693214-3	chr7	3693107	3693307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164205)	promoter-TSS (NM_001164205)	318.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	95.7	104.13	91.84	66.36	72.82	116.34	70.75	43.49	127.26	145.11	107.03	69.23
Merged-chr7-125613851-3	chr7	125613760	125613960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	L1MA9|LINE|L1	10431.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	33.11	25.66	51.34	50.68	45.0	46.41	48.5	47.41	28.13	21.59	42.71	31.95
Merged-chr19-3575926-3	chr19	3575833	3576033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028999)	promoter-TSS (NM_028999)	-184.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	152.63	153.68	129.49	117.44	168.55	217.93	132.54	119.8	175.64	183.27	203.51	80.2
Merged-chr7-80860411-3	chr7	80860312	80860512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1696.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	38.36	23.14	26.81	13.27	40.91	40.76	14.62	27.39	44.84	39.67	42.71	13.47
Merged-chr7-90370437-3	chr7	90370363	90370563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-16518.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	70.66	52.82	86.14	83.66	67.5	57.7	59.13	92.16	74.15	44.19	90.95	57.64
Merged-chr16-92698787-3	chr16	92698674	92698874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	CpG	-1445.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	37.96	24.15	37.65	19.31	34.36	31.36	18.6	22.6	41.89	28.62	51.76	23.81
Merged-chrUn_JH584304-59048-1	chrUn_JH584304	58948	59148	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 1 of 6)	intron (NR_003518, intron 1 of 6)	641.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	571.18	516.16	571.83	308.88
Merged-chr1-152581307-3	chr1	152581215	152581415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43902.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	136.08	125.26	86.71	91.3	135.41	166.19	86.03	92.58	145.75	157.16	140.19	80.82
Merged-chr9-123923282-3	chr9	123923193	123923393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	45399.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	18.57	21.88	29.09	16.49	20.46	15.68	14.62	20.55	47.8	28.62	40.2	41.04
Merged-chr3-31056739-8	chr3	31056708	31056908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	17842.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	23.42	15.09	13.69	9.25	16.36	16.62	13.95	7.09	35.99	33.14	46.23	20.05
Merged-chr9-96537041-3	chr9	96536942	96537142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-58367.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	13.73	13.58	31.95	14.88	27.82	13.8	25.58	15.67	19.08	9.54	26.13	14.41
Merged-chr8-108387356-3	chr8	108387247	108387447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	197330.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	35.53	21.38	38.79	37.0	36.82	34.81	33.22	44.41	41.11	26.61	58.29	22.24
Merged-chr8-117340427-3	chr8	117340339	117340539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-8731.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	72.68	60.12	106.68	87.68	106.78	92.19	93.67	128.1	102.28	67.78	126.63	78.32
Merged-chr1-182124728-3	chr1	182124652	182124852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012058)	promoter-TSS (NM_012058)	15.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	93.68	94.57	107.82	95.72	125.59	140.17	74.07	108.42	140.83	141.59	235.16	85.21
Merged-chr7-34196452-4	chr7	34196306	34196506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360710, exon 2 of 6)	exon (NM_001360710, exon 2 of 6)	264.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	27.05	27.17	20.54	32.98	31.09	35.12	31.22	32.69	33.63	34.65	39.19	33.21
Merged-chr3-137918540-3	chr3	137918441	137918641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019920)	promoter-TSS (NM_019920)	-14.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	84.39	49.8	53.62	65.96	98.59	93.76	52.48	75.67	93.03	105.44	112.56	69.86
Merged-chr1-62770775-3	chr1	62770660	62770860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 11 of 16)	intron (NM_001077404, intron 11 of 16)	23972.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	28.27	19.37	31.38	30.57	29.46	19.76	14.28	28.26	31.86	23.6	20.6	19.11
Merged-chr9-57233973-3	chr9	57233859	57234059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2597.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	31.5	42.51	29.66	40.22	51.14	73.69	53.15	55.82	54.48	67.78	48.24	49.81
Merged-chr11-60727323-3	chr11	60727247	60727447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302207)	promoter-TSS (NM_001302207)	-84.0	NM_001302207	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	30.28	28.93	42.21	37.0	30.68	39.2	22.26	26.22	26.95	33.64	42.71	25.06
Merged-chr19-43511740-3	chr19	43511641	43511841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	12864.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	71.47	64.39	41.07	55.91	71.59	73.06	50.82	77.52	43.86	48.7	91.45	45.11
Merged-chr11-80183847-3	chr11	80183746	80183946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-26.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	23.82	20.63	41.07	22.93	44.59	37.32	19.27	31.46	42.48	44.19	54.27	18.48
Merged-chr6-34399355-3	chr6	34399243	34399443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13019.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	63.8	43.26	69.03	46.66	56.87	44.21	52.15	76.15	66.48	54.23	77.38	43.23
Merged-chr12-30911631-3	chr12	30911530	30911730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013709)	promoter-TSS (NM_013709)	-18.0	NM_001110239	11431.0	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	107.41	108.91	83.29	112.62	134.6	149.57	120.58	90.9	148.5	173.73	211.55	98.99
Merged-chr4-130790363-3	chr4	130790260	130790460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2177.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	33.52	48.54	49.63	30.57	36.41	50.49	29.56	37.77	41.5	48.2	45.73	21.3
Merged-chr10-117148571-3	chr10	117148462	117148662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-88.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	76.32	65.9	87.85	58.72	101.05	84.35	63.44	97.32	116.83	91.38	136.68	77.69
Merged-chr2-121171122-3	chr2	121170979	121171179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	46.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	43.61	26.16	59.9	46.66	32.73	31.36	28.9	40.29	41.7	28.12	57.79	39.47
Merged-chr11-69095134-3	chr11	69095059	69095259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3790.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	231.37	265.61	221.91	223.62	281.05	324.55	200.3	227.92	295.43	334.4	348.22	184.83
Merged-chr1-105171230-3	chr1	105171125	105171325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-184782.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	34.32	14.84	29.09	28.15	17.59	22.89	27.24	33.0	31.47	38.66	65.32	27.57
Merged-chr7-126272372-3	chr7	126272269	126272469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145587)	promoter-TSS (NM_145587)	-127.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	16.96	14.59	8.56	11.26	29.46	52.99	19.93	29.13	36.58	36.65	55.27	20.68
Merged-chr19-3377118-3	chr19	3377000	3377200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11757.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	71.07	69.92	84.43	55.1	95.73	94.7	59.79	96.79	74.15	109.96	84.92	61.71
Merged-chr2-169918685-1	chr2	169918585	169918785	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44502.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.0	1.51	0.0	0.0	0.0	0.0	0.0	0.03	31.08	22.09	26.13	12.84
Merged-chr3-103171727-3	chr3	103171651	103171851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	96.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	90.05	103.38	75.3	87.68	94.5	117.59	75.07	89.58	111.52	132.05	128.64	69.55
Merged-chr4-108847957-3	chr4	108847870	108848070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	113.0	NM_029571	100087.0	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	21.4	25.66	16.54	27.35	22.09	20.38	40.52	19.29	21.44	28.62	26.13	9.08
Merged-chr10-78244165-3	chr10	78244075	78244275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081055, intron 1 of 22)	CpG	467.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	25.84	31.69	10.84	19.71	27.41	35.75	21.26	16.88	33.24	23.6	16.08	15.35
Merged-chr9-118610204-3	chr9	118610093	118610293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3484.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.69	13.58	29.09	24.13	18.0	39.51	22.26	25.26	24.78	24.1	41.2	20.99
Merged-chr7-80166899-3	chr7	80166798	80166998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19943.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	61.38	57.6	47.92	26.14	44.59	80.9	39.86	28.21	43.47	51.21	54.77	22.87
Merged-chr11-70669361-3	chr11	70669256	70669456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	60.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	66.22	70.93	78.15	59.12	72.0	74.32	36.87	50.16	87.53	102.93	83.91	54.82
Merged-chr11-69418185-3	chr11	69418099	69418299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	111.45	117.97	67.31	59.12	63.0	136.09	55.14	60.81	135.32	110.97	126.12	74.56
Merged-chr6-31220456-4	chr6	31220324	31220524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	73.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	29.07	22.89	31.38	24.13	31.09	32.93	27.24	28.57	28.13	33.64	40.2	30.7
Merged-chr10-80292392-3	chr10	80292315	80292515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-16.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	90.05	71.94	42.21	55.1	94.5	110.06	43.51	71.02	91.85	103.94	111.55	72.05
Merged-chr15-96633790-3	chr15	96633705	96633905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	MTD|LTR|ERVL-MaLR	8157.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	48.86	33.2	45.07	40.62	40.5	57.38	39.86	76.26	68.05	52.72	38.19	25.06
Merged-chr9-86592852-3	chr9	86592766	86592966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20813.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	40.38	30.18	37.08	42.23	57.68	55.5	37.54	74.02	48.58	26.11	52.26	25.06
Merged-chr17-56472978-3	chr17	56472895	56473095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	3485.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	52.09	41.75	49.63	41.43	41.73	60.21	39.53	47.5	38.55	57.24	51.25	27.25
Merged-chr4-152176820-3	chr4	152176731	152176931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1269.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	15.34	20.63	33.09	24.94	24.14	24.77	12.95	23.47	19.28	18.58	25.12	21.62
Merged-chr6-128135211-3	chr6	128135092	128135292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8386.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	76.32	48.29	44.5	64.75	48.68	75.57	63.78	75.06	88.51	52.22	119.09	59.21
Merged-chr15-58266606-3	chr15	58266499	58266699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	54.92	42.51	80.43	46.25	102.28	75.26	74.41	95.61	85.95	67.28	117.08	55.76
Merged-chr5-112240910-3	chr5	112240814	112241014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11604.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	17.36	15.85	24.53	14.48	30.27	28.22	14.95	20.83	33.83	21.09	37.18	24.43
Merged-chr7-43667432-2	chr7	43667335	43667535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-4596.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	23.02	15.85	21.68	19.31	25.77	28.54	33.22	12.84	43.47	42.18	31.15	22.56
Merged-chr7-127573245-3	chr7	127573137	127573337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-111.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	146.98	136.33	154.02	149.62	191.05	208.21	127.55	146.19	173.68	155.65	174.86	120.29
Merged-chr6-100370497-3	chr6	100370421	100370621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-83163.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	18.17	22.39	41.64	29.36	28.64	27.59	16.61	20.05	41.3	55.23	41.2	19.74
Merged-chr10-119063260-1	chr10	119063160	119063360	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	-12761.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	14.13	12.07	22.25	20.11	45.41	37.63	44.51	56.61	43.86	48.7	72.86	39.16
Merged-chr15-64278964-3	chr15	64278873	64279073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33700.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	30.69	29.18	27.95	45.85	29.86	34.81	22.26	34.51	26.55	34.65	32.66	30.07
Merged-chr10-62547075-3	chr10	62546973	62547173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19628.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	20.59	37.73	23.96	22.12	36.0	40.76	14.95	34.85	41.11	37.16	39.7	16.6
Merged-chr1-36272684-3	chr1	36272586	36272786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	739.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	25.44	26.66	37.08	24.53	41.73	43.59	15.61	33.17	38.35	20.59	44.72	25.37
Merged-chr1-154034322-3	chr1	154034213	154034413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134384.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	39.57	32.45	45.07	25.34	39.68	49.23	30.23	49.01	42.09	50.71	54.27	21.62
Merged-chr11-70647090-3	chr11	70646968	70647168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027445)	promoter-TSS (NM_027445)	-29.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	118.72	92.56	65.6	75.21	110.46	141.73	63.44	57.76	111.92	121.01	74.87	58.58
Merged-chr9-65460865-3	chr9	65460766	65460966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138584)	promoter-TSS (NM_138584)	-71.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	112.66	74.7	110.1	96.53	78.14	97.21	108.95	100.77	114.47	113.98	117.58	77.69
Merged-chr16-21333333-3	chr16	21333234	21333434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131983)	promoter-TSS (NR_131983)	22.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	69.45	51.81	55.33	57.92	57.68	59.27	50.82	62.58	63.14	55.23	55.78	43.23
Merged-chr10-21994613-3	chr10	21994493	21994693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011361)	promoter-TSS (NM_011361)	-73.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	159.9	142.87	144.9	121.46	153.82	184.38	138.18	122.78	136.3	151.64	175.87	95.55
Merged-chr13-55202222-3	chr13	55202113	55202313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-7569.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	24.23	24.9	15.97	21.72	21.68	27.59	15.61	21.56	19.67	22.59	33.67	15.04
Merged-chr18-4353005-3	chr18	4352898	4353098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-45.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	181.71	185.88	172.28	191.04	173.05	201.94	127.89	148.94	218.72	220.93	275.36	109.96
Merged-chr14-75032378-3	chr14	75032277	75032477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198642, exon 2 of 14)	exon (NM_198642, exon 2 of 14)	16350.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	25.04	27.42	34.8	21.72	24.55	25.4	24.58	26.61	19.47	28.12	37.18	12.53
Merged-chr7-118129693-3	chr7	118129603	118129803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019419)	promoter-TSS (NM_019419)	-78.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	241.47	202.73	236.74	195.07	235.23	268.1	208.94	253.52	241.14	274.65	316.06	182.32
Merged-chr3-58416513-3	chr3	58416422	58416622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1802.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	54.11	68.92	50.77	57.51	45.82	63.66	54.14	54.65	70.81	62.26	98.99	52.32
Merged-chr10-75473641-3	chr10	75473542	75473742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24132.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	21.4	24.9	26.24	27.35	40.5	32.3	31.89	34.37	48.58	25.61	43.72	27.25
Merged-chr13-55693025-3	chr13	55692918	55693118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181278)	promoter-TSS (NM_181278)	-106.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	85.6	73.7	65.6	57.92	73.23	103.79	39.2	46.93	87.13	107.45	77.38	62.34
Merged-chr14-63438205-3	chr14	63438140	63438340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 1 of 3)	ID_B1|SINE|B4	1846.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	75.91	75.96	72.45	58.72	78.96	132.01	63.44	65.52	108.38	80.84	88.94	51.38
Merged-chr11-23754465-3	chr11	23754359	23754559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	16511.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	59.76	45.53	61.04	26.55	33.55	94.7	28.57	34.43	69.23	64.27	65.32	27.25
Merged-chr11-77513319-3	chr11	77513212	77513412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024920)	promoter-TSS (NM_001024920)	-39.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	44.82	36.22	54.76	32.18	56.05	60.83	30.89	45.95	62.74	50.21	62.81	27.88
Merged-chr17-65604501-3	chr17	65604407	65604607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9048.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	18.57	23.9	31.38	17.29	31.09	23.52	13.95	22.46	29.11	33.64	33.67	26.0
Merged-chr15-76080580-3	chr15	76080491	76080691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356629, intron 1 of 12)	CpG	279.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	62.99	52.07	49.63	59.93	74.87	79.96	44.51	47.58	83.59	94.9	111.05	61.4
Merged-chr17-25861505-3	chr17	25861381	25861581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163766)	promoter-TSS (NM_001163766)	34.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	125.98	100.36	102.68	84.06	96.55	91.88	38.53	72.95	87.53	132.05	105.02	73.93
Merged-chr10-4047252-2	chr10	4047161	4047361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 17 of 27)	ID4_|SINE|ID	74186.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	8.88	5.53	21.11	13.27	14.73	14.42	16.94	33.48	5.9	7.03	6.53	6.89
Merged-chr11-104442942-3	chr11	104442842	104443042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-651.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	67.03	54.33	63.89	57.92	77.32	89.37	37.2	71.89	80.25	66.78	102.51	50.44
Merged-chr10-8875409-3	chr10	8875300	8875500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	10670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	104.99	72.19	154.59	106.58	162.0	183.75	140.84	157.35	115.65	106.45	112.05	51.06
Merged-chr13-42051299-2	chr13	42051194	42051394	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-727.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	79.14	108.66	64.46	73.2	50.73	110.69	48.83	47.97	113.49	108.96	113.56	47.93
Merged-chr4-130919440-3	chr4	130919356	130919556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6122.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	47.65	56.09	48.49	30.97	52.37	82.78	52.48	41.38	60.97	48.2	57.28	26.63
Merged-chr14-79451837-3	chr14	79451757	79451957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	22.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	35.94	36.47	32.52	18.9	67.91	45.15	39.53	47.44	41.5	30.63	52.76	27.88
Merged-chr17-80290180-3	chr17	80290085	80290285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-27.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	81.57	73.7	114.09	94.52	108.82	127.62	80.72	148.15	179.38	117.99	224.11	119.04
Merged-chr5-3493274-3	chr5	3493184	3493384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-50549.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	27.46	40.5	25.1	35.8	56.46	74.63	42.19	38.75	74.15	64.27	62.81	29.45
Merged-chr7-110891735-3	chr7	110891656	110891856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194464, intron 15 of 20)	L1MEd|LINE|L1	-13229.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	23.02	29.93	29.09	37.0	21.27	18.5	33.55	19.09	28.91	37.66	44.22	22.87
Merged-chr5-121284987-2	chr5	121284894	121285094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 11 of 75)	intron (NM_181421, intron 11 of 75)	64775.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	8.48	9.06	14.83	8.45	5.32	8.15	2.99	12.98	3.93	2.01	15.58	3.13
Merged-chr18-23843526-3	chr18	23843418	23843618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	39548.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	27.05	27.42	38.22	30.16	35.18	36.37	24.58	44.41	33.24	43.18	68.34	31.01
Merged-chr9-118612406-3	chr9	118612327	118612527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	5718.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	19.79	23.14	31.95	26.14	44.59	39.51	47.5	44.38	60.78	61.26	59.8	46.36
Merged-chr14-55591098-3	chr14	55591006	55591206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-5.0	NM_001029855	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	163.94	160.22	170.57	150.82	193.1	224.52	153.8	166.96	230.91	205.86	281.89	134.08
Merged-chr6-108466232-3	chr6	108466116	108466316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-23527.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	32.71	14.59	32.52	30.97	31.5	23.83	59.79	70.6	21.44	9.54	25.63	27.88
Merged-chr2-132029931-3	chr2	132029834	132030034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175445)	promoter-TSS (NM_175445)	54.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	30.28	14.84	23.39	22.12	65.05	47.04	25.24	40.85	25.96	38.16	33.16	33.83
Merged-chr7-113207270-3	chr7	113207154	113207354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007489)	promoter-TSS (NM_007489)	-211.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	261.66	284.73	248.15	310.1	258.55	336.78	252.12	327.56	363.28	406.2	420.58	196.1
Merged-chr18-35598591-3	chr18	35598478	35598678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-39.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	39.17	36.47	28.52	24.53	43.36	52.37	16.28	41.97	61.96	55.73	63.31	45.42
Merged-chr1-135746304-3	chr1	135746201	135746401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 3 of 5)	intron (NM_001360782, intron 3 of 5)	17134.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	112.66	89.8	82.72	90.9	60.55	79.02	87.03	97.01	135.52	119.0	200.49	94.29
Merged-chr7-81829573-3	chr7	81829466	81829666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146193)	promoter-TSS (NM_146193)	-135.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	75.51	74.96	103.25	48.26	72.41	103.48	68.43	74.52	54.29	64.77	83.91	41.35
Merged-chr10-22302526-3	chr10	22302445	22302645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4175.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	86.41	59.36	118.08	96.53	104.32	109.75	76.4	151.85	56.65	51.21	70.35	30.7
Merged-chr1-155412928-3	chr1	155412833	155413033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	4511.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	29.48	27.42	14.83	22.52	29.86	26.65	21.26	44.69	34.62	15.57	42.21	11.9
Merged-chr3-61364517-3	chr3	61364438	61364638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	31.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	194.23	186.13	211.07	214.77	195.55	218.56	164.42	207.65	237.4	263.1	309.53	146.92
Merged-chr15-58876341-3	chr15	58876224	58876424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3675.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	30.28	25.91	38.22	30.97	37.64	37.63	14.28	31.77	52.52	38.66	35.68	35.71
Merged-chr6-83572517-3	chr6	83572415	83572615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024239)	promoter-TSS (NM_024239)	-11.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	48.05	37.98	61.61	51.88	78.14	61.15	30.23	50.8	85.76	52.72	74.37	41.98
Merged-chr3-89102046-3	chr3	89101943	89102143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134469)	promoter-TSS (NM_134469)	-76.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	155.87	125.26	166.0	146.4	137.87	195.04	89.02	124.79	173.28	154.15	150.24	99.62
Merged-chr1-170976084-3	chr1	170975980	170976180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010187)	promoter-TSS (NM_010187)	-9.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	24.63	22.89	25.1	14.88	30.27	30.73	12.62	30.53	39.14	40.67	24.62	25.06
Merged-chr12-91734853-3	chr12	91734746	91734946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	51590.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	77.12	55.34	98.69	58.32	77.73	85.92	65.11	99.08	85.95	61.26	126.63	48.24
Merged-chr12-54695805-3	chr12	54695692	54695892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001331162, exon 1 of 5)	5' UTR (NM_001331162, exon 1 of 5)	102.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	62.18	65.65	62.18	86.47	70.37	94.07	63.78	71.94	94.8	95.9	96.98	62.03
Merged-chr7-123397541-3	chr7	123397450	123397650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10267.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	53.7	50.31	78.15	58.72	39.68	45.78	35.21	60.81	69.63	44.69	58.79	35.71
Merged-chr8-84846975-3	chr8	84846889	84847089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	-58.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	226.53	190.41	217.91	197.08	234.01	284.72	175.39	216.76	321.19	332.9	337.17	146.3
Merged-chr8-94857467-3	chr8	94857376	94857576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009090)	promoter-TSS (NM_009090)	26.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	35.13	27.92	38.22	21.72	46.23	32.61	28.57	19.35	65.1	58.24	38.69	25.69
Merged-chr2-164681703-3	chr2	164681621	164681821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-3386.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	27.05	14.59	34.23	29.76	50.32	30.1	52.48	60.7	49.17	37.16	60.8	38.85
Merged-chr4-129883076-3	chr4	129882907	129883107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-23219.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	26.65	29.18	19.4	24.94	31.5	27.28	19.93	19.26	30.68	35.65	32.16	23.81
Merged-chr9-72111900-3	chr9	72111789	72111989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	-70.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	38.36	38.23	22.82	39.82	50.32	51.74	27.9	35.38	73.36	59.75	78.89	41.04
Merged-chr2-19658494-3	chr2	19658413	19658613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	451.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	41.59	33.45	47.92	33.38	36.82	22.58	36.54	29.07	39.93	35.65	44.72	15.66
Merged-chr7-99091402-3	chr7	99091314	99091514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	49730.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	42.8	21.63	52.48	38.21	38.46	45.47	58.46	42.56	35.8	35.65	49.75	26.63
Merged-chr4-45890247-3	chr4	45890150	45890350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-53.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	64.61	55.84	50.77	55.1	60.14	60.83	30.23	61.99	62.15	53.22	96.48	46.99
Merged-chr12-102743759-3	chr12	102743661	102743861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324515)	promoter-TSS (NM_001324515)	1.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	132.44	148.15	122.08	134.74	104.73	145.5	94.0	109.04	138.86	125.02	148.23	100.25
Merged-chr1-180428145-4	chr1	180428063	180428263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55341.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	11.71	16.85	13.69	4.83	41.73	19.76	24.91	17.02	36.19	43.68	27.13	15.04
Merged-chr17-13940676-3	chr17	13940566	13940766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7707.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	35.53	22.13	50.2	59.12	65.46	42.65	32.22	67.43	49.96	45.69	77.88	37.59
Merged-chr5-143602299-3	chr5	143602199	143602399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20148.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	19.79	12.07	20.54	21.72	17.59	27.91	29.23	36.79	43.66	33.14	34.17	34.15
Merged-chr3-131643003-4	chr3	131642895	131643095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011863, exon 12 of 12)	exon (NM_011863, exon 12 of 12)	76963.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	23.82	37.23	44.5	32.98	25.36	37.32	52.82	30.5	41.7	45.19	47.74	18.48
Merged-chr2-91537790-3	chr2	91537741	91537941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165989, intron 1 of 43)	intron (NM_001165989, intron 1 of 43)	-8481.0	NM_029437	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	24.23	25.15	30.8	40.62	35.18	20.7	31.22	35.55	34.22	29.12	39.19	29.76
Merged-chr11-64832332-3	chr11	64832241	64832441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146694.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	33.11	23.9	35.94	33.38	69.55	67.1	55.8	57.0	35.6	47.2	43.72	21.93
Merged-chr4-95230663-3	chr4	95230569	95230769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-178447.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	36.75	31.19	50.2	49.07	52.77	44.21	63.78	67.18	71.2	55.23	79.89	52.32
Merged-chr6-114644723-3	chr6	114644618	114644818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1621.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	44.82	26.16	50.2	43.44	57.68	65.85	34.88	52.91	67.66	53.73	77.88	39.78
Merged-chr7-43642799-3	chr7	43642703	43642903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 4 of 5)	RLTR28|LTR|ERVL	8064.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	63.4	55.08	55.33	62.34	56.46	73.38	33.88	52.77	90.28	73.31	84.42	46.36
Merged-chr10-19933935-4	chr10	19933896	19934096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-530.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	27.05	15.59	11.98	20.11	43.36	42.02	21.59	31.09	16.92	22.09	19.09	12.22
Merged-chr4-100548137-3	chr4	100548023	100548223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033773, intron 9 of 9)	intron (NM_001033773, intron 9 of 9)	69256.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	35.94	31.94	53.05	45.85	36.41	30.73	29.9	55.21	45.43	46.19	72.36	33.21
Merged-chr6-124806152-3	chr6	124806057	124806257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2504.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	39.57	35.21	46.78	40.62	50.32	53.62	26.91	37.29	62.94	67.28	73.36	36.03
Merged-chr15-36879842-3	chr15	36879719	36879919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82890.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	35.13	35.72	34.8	40.62	49.91	46.41	38.86	61.01	42.68	40.17	67.84	29.45
Merged-chr13-118775343-3	chr13	118775252	118775452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	60653.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	95.3	79.23	88.42	100.15	119.46	100.66	74.07	119.41	76.71	53.22	78.39	44.48
Merged-chr3-95951257-3	chr3	95951139	95951339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21982.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	59.76	59.36	54.76	43.44	58.5	81.84	53.48	44.13	63.14	53.22	67.33	55.13
Merged-chr12-116047655-3	chr12	116047572	116047772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-52.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	126.39	150.92	146.04	160.88	205.78	246.15	182.03	229.26	263.17	238.5	312.54	156.95
Merged-chr5-99979086-3	chr5	99978995	99979195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077267)	promoter-TSS (NM_001077267)	-157.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	157.88	135.32	138.05	131.92	145.23	199.12	105.3	121.96	191.77	205.86	242.2	108.7
Merged-chr1-182504459-3	chr1	182504368	182504568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	13142.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	62.99	56.85	71.88	39.82	52.37	108.18	48.16	54.36	68.64	80.34	93.46	48.24
Merged-chr3-87509327-3	chr3	87509233	87509433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16245.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	33.52	21.38	39.36	16.49	29.86	61.77	38.2	24.28	62.15	40.17	43.72	15.66
Merged-chr3-106790133-3	chr3	106790052	106790252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007651)	promoter-TSS (NM_007651)	-3.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	76.32	63.64	67.31	109.0	67.91	85.61	53.15	83.52	100.7	82.35	100.5	49.18
Merged-chr5-113634461-2	chr5	113634399	113634599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9104.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	18.57	21.13	26.81	30.97	19.64	37.94	22.92	23.24	37.37	20.08	38.19	30.7
Merged-chr8-75155081-3	chr8	75154998	75155198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	45589.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	29.48	35.21	41.64	40.22	29.46	41.71	60.79	80.08	55.07	44.69	71.86	31.95
Merged-chrUn_JH584304-65037-1	chrUn_JH584304	64937	65137	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5348.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	25.77	36.15	36.68	29.45
Merged-chr4-72195334-3	chr4	72195236	72195436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	5557.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	29.48	22.13	64.46	39.01	53.59	56.13	55.47	78.95	35.4	28.62	52.26	18.17
Merged-chr6-117917075-3	chr6	117916982	117917182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166427)	promoter-TSS (NM_001166427)	-212.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	65.01	64.89	71.88	55.5	54.41	73.06	69.09	59.97	72.18	75.82	74.37	56.7
Merged-chr1-37639303-3	chr1	37639209	37639409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	80502.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	26.25	15.09	20.54	27.35	29.86	30.73	14.62	18.14	34.81	21.09	29.14	19.11
Merged-chr7-126725310-3	chr7	126725197	126725397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-20481.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	28.67	29.18	15.97	26.14	39.27	48.92	40.52	21.67	46.62	41.67	33.16	25.69
Merged-chr5-122284349-3	chr5	122284259	122284459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177242)	promoter-TSS (NM_177242)	-39.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	37.15	36.47	61.61	33.78	43.77	49.86	28.23	45.65	55.66	70.29	70.35	36.34
Merged-chr16-17181541-3	chr16	17181420	17181620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009456, intron 1 of 3)	L3|LINE|CR1	19972.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	92.07	73.7	103.25	121.87	92.05	109.12	76.73	100.32	87.53	76.32	87.43	66.73
Merged-chr8-108901451-3	chr8	108901326	108901526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-35434.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	26.65	30.69	39.93	32.58	45.0	67.73	39.86	66.9	32.06	28.12	45.73	24.12
Merged-chr12-3418927-3	chr12	3418823	3419023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	7824.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	21.4	19.87	34.8	29.76	32.32	28.85	19.93	31.85	24.0	22.59	27.13	19.11
Merged-chr13-6648821-3	chr13	6648714	6648914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-43.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	88.03	77.22	81.0	116.24	124.37	101.28	90.35	145.74	144.57	113.98	240.69	94.61
Merged-chr2-38211633-3	chr2	38211543	38211743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	75741.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	60.57	38.48	67.88	34.99	60.14	102.85	48.5	53.58	88.71	69.29	95.47	33.21
Merged-chr13-44491095-3	chr13	44490989	44491189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51362.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	23.42	18.36	29.66	21.32	24.96	27.28	21.59	24.9	38.75	32.13	47.74	22.56
Merged-chr12-85945134-1	chr12	85945034	85945234	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	Lx9|LINE|L1	120184.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	2.42	3.02	2.28	11.26	3.27	0.63	13.95	14.58	2.95	0.5	6.03	10.02
Merged-chr13-98871350-3	chr13	98871146	98871346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 6 of 23)	PB1D9|SINE|Alu	19796.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	9.29	11.32	2.28	7.24	4.91	2.51	7.64	6.34	10.62	19.58	18.09	10.02
Merged-chr10-63377630-3	chr10	63377506	63377706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-4837.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	21.0	23.64	15.4	18.5	24.14	29.79	16.94	10.91	30.29	29.62	36.18	16.29
Merged-chr5-137778801-3	chr5	137778675	137778875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356989)	promoter-TSS (NM_001356989)	-129.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	38.36	37.98	31.95	28.96	40.09	43.9	20.93	39.67	44.84	47.7	34.17	23.18
Merged-chr5-105558786-3	chr5	105558692	105558892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	39321.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	83.18	70.18	81.58	45.05	49.91	78.71	23.25	33.2	76.71	71.8	74.87	37.91
Merged-chr3-105023549-3	chr3	105023435	105023635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	29418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	93.28	75.96	96.41	92.91	78.14	93.76	61.12	82.07	96.97	90.38	140.19	79.88
Merged-chr3-137864427-3	chr3	137864324	137864524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316995)	promoter-TSS (NM_001316995)	-63.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	182.92	171.79	191.1	169.73	228.69	249.6	162.1	194.19	290.9	266.62	387.92	152.56
Merged-chr6-134595078-3	chr6	134594980	134595180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-28167.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	26.65	16.1	31.38	35.39	40.91	24.46	28.57	55.57	26.16	23.6	31.66	25.06
Merged-chr6-81447925-3	chr6	81447858	81448058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	447705.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	65.41	74.7	94.7	96.53	99.82	96.89	86.03	114.0	131.39	141.09	139.69	99.31
Merged-chr11-100619148-3	chr11	100619057	100619257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	CpG	1011.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	46.84	35.72	26.81	53.89	33.96	46.72	28.9	30.34	48.19	44.19	66.33	36.97
Merged-chr2-156863984-3	chr2	156863882	156864082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026124, intron 1 of 3)	intron (NM_026124, intron 1 of 3)	860.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	59.36	35.97	63.89	36.6	71.59	81.53	58.46	65.41	61.76	64.27	74.37	35.71
Merged-chr11-58104563-3	chr11	58104458	58104658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356477, intron 1 of 6)	CpG	329.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	71.47	58.1	53.62	62.34	69.14	58.01	37.2	57.81	33.24	51.21	54.77	41.35
Merged-chr15-96627431-3	chr15	96627349	96627549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	14513.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	25.44	22.13	32.52	25.34	36.0	38.88	31.56	55.09	62.74	30.63	77.38	47.3
Merged-chr10-84577397-3	chr10	84577303	84577503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146008, intron 1 of 9)	CpG	456.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	33.52	20.37	15.4	38.61	23.32	35.12	29.56	35.86	38.75	37.66	57.79	31.01
Merged-chr17-80775397-3	chr17	80775297	80775497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-47372.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	75.91	79.73	71.31	68.78	76.09	93.44	72.08	83.52	107.79	116.99	105.02	94.61
Merged-chr2-78868898-6	chr2	78868791	78868991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009454)	promoter-TSS (NM_009454)	-156.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	27.86	27.17	19.97	18.1	27.0	41.71	30.89	19.04	43.27	39.16	45.73	26.31
Merged-chr4-155847998-1	chr4	155847898	155848098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356381, intron 1 of 15)	CpG	596.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	2.83	3.77	5.13	8.04	3.27	1.88	9.3	3.87	6.29	7.53	8.54	10.96
Merged-chr4-101741717-3	chr4	101741614	101741814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24307.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	33.11	23.9	42.78	28.56	56.46	49.86	56.14	57.42	77.69	75.82	113.56	44.8
Merged-chr18-75924945-1	chr18	75924845	75925045	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	104767.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.4	1.01	0.0	0.0	0.0	1.25	1.33	1.21	46.81	35.65	35.17	24.43
Merged-chr6-47953406-3	chr6	47953305	47953505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	15.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	49.67	44.52	58.76	80.04	72.0	64.91	82.38	91.21	52.12	66.78	85.92	45.42
Merged-chr9-111059300-3	chr9	111059213	111059413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-1795.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	199.07	176.57	185.4	228.05	227.46	255.88	219.23	199.32	258.45	238.0	270.84	143.16
Merged-chr1-105976388-3	chr1	105976292	105976492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13890.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	27.86	26.91	26.24	21.32	28.23	25.71	13.62	32.27	42.09	34.14	46.23	23.18
Merged-chr7-12818789-3	chr7	12818666	12818866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026046)	promoter-TSS (NM_026046)	94.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	47.65	42.01	37.08	43.84	51.55	40.14	56.8	55.46	49.17	32.13	46.23	37.28
Merged-chr15-84988651-2	chr15	84988551	84988751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-680.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	17.36	7.55	21.11	7.24	15.14	23.2	5.31	14.16	13.18	13.56	19.6	11.28
Merged-chr10-46108995-3	chr10	46108877	46109077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135771.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	64.61	81.24	108.96	147.61	126.0	131.07	116.92	156.42	142.6	145.11	179.39	104.63
Merged-chr9-48985157-3	chr9	48985061	48985261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-224.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	211.59	249.01	229.32	194.26	267.14	358.1	186.02	168.25	327.09	312.81	332.14	182.63
Merged-chr17-15396194-3	chr17	15396101	15396301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-1.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	196.65	179.84	180.83	174.15	176.32	235.81	148.48	217.4	241.53	217.91	282.9	140.03
Merged-chr15-8627318-3	chr15	8627201	8627401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83506.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	39.57	27.42	23.96	27.75	43.77	43.27	27.9	40.26	37.37	32.13	41.71	30.07
Merged-chr3-97932376-3	chr3	97932277	97932477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2204.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	32.71	24.4	92.41	57.92	31.91	45.78	44.84	78.73	39.93	32.64	51.25	37.28
Merged-chr5-112266385-5	chr5	112266308	112266508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-10283.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	12.92	23.14	21.11	32.18	13.91	24.15	26.57	19.21	27.54	31.63	27.13	22.87
Merged-chr5-53401249-3	chr5	53401148	53401348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134142.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	43.21	38.99	45.07	37.4	62.59	46.72	37.2	46.43	65.3	54.73	78.39	44.48
Merged-chr3-81102334-3	chr3	81102219	81102419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	65903.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	71.47	62.88	91.27	95.72	104.73	79.33	57.8	98.24	116.83	96.4	99.49	71.74
Merged-chr1-127981238-3	chr1	127981143	127981343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	112470.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	60.17	50.56	104.96	90.9	95.32	79.96	104.63	115.65	101.29	81.34	122.1	75.81
Merged-chr18-23896809-3	chr18	23896717	23896917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57871.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	76.72	67.91	105.53	104.17	90.0	112.26	99.98	130.18	103.06	98.91	122.61	68.61
Merged-chr12-64917796-3	chr12	64917696	64917896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-115.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	171.21	154.69	135.2	165.3	173.05	242.08	140.18	224.83	261.6	246.03	326.61	118.73
Merged-chr12-111966986-3	chr12	111966844	111967044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361914)	promoter-TSS (NM_001361914)	65.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	23.42	31.69	31.38	26.14	38.46	51.74	40.52	33.67	55.86	51.21	49.24	47.3
Merged-chr18-57571473-3	chr18	57571364	57571564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-19067.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	34.32	22.39	34.23	32.98	24.96	19.76	26.57	34.26	40.91	30.13	39.19	24.12
Merged-chr11-55008388-3	chr11	55008302	55008502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 6 of 24)	L2b|LINE|L2	25069.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	54.51	32.45	44.5	45.85	84.28	69.61	63.44	89.24	73.17	62.76	90.45	58.27
Merged-chr15-38278322-3	chr15	38278232	38278432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21568.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	14.54	14.34	9.7	19.31	9.82	22.26	23.58	13.82	24.19	18.08	29.65	13.47
Merged-chr15-80255130-3	chr15	80255040	80255240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-44.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	102.16	93.32	109.53	77.22	104.73	121.35	63.44	108.11	156.17	150.13	177.88	96.8
Merged-chr8-11461131-3	chr8	11461049	11461249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16780.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	128.0	128.03	145.47	125.49	151.78	167.13	136.52	134.92	169.94	169.21	170.84	116.54
Merged-chr19-5473890-3	chr19	5473796	5473996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-794.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	44.82	22.89	25.67	24.94	27.41	21.95	19.93	23.8	36.19	28.12	29.14	18.17
Merged-chr2-6705724-3	chr2	6705623	6705823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	15939.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	18.17	18.61	22.25	28.56	34.36	20.7	16.61	32.75	27.34	22.59	26.13	19.74
Merged-chr13-67637782-3	chr13	67637683	67637883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-30.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	85.2	50.05	80.43	74.0	69.14	94.39	69.42	61.49	86.15	90.38	107.53	41.04
Merged-chr13-23621712-3	chr13	23621616	23621816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-592.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	35.53	16.6	51.34	31.77	40.5	36.69	40.52	47.38	40.12	53.73	105.02	43.23
Merged-chr11-97659189-3	chr11	97659085	97659285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4227.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	153.44	131.55	121.51	105.78	141.96	211.66	104.97	88.51	181.15	187.29	175.87	80.82
Merged-chr11-115765382-3	chr11	115765281	115765481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-52.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	93.68	69.17	57.62	47.46	69.14	66.48	41.19	46.15	80.84	114.48	42.21	54.2
Merged-chr11-94544133-3	chr11	94544046	94544246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013381, exon 5 of 9)	exon (NM_001013381, exon 5 of 9)	5061.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	27.46	16.6	25.67	22.93	27.0	38.88	15.28	27.17	22.23	35.15	47.23	20.68
Merged-chr9-106892037-3	chr9	106891964	106892164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-126.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	165.15	172.8	205.36	135.14	178.37	200.69	145.49	159.53	291.3	241.01	345.71	165.4
Merged-chr10-56879889-1	chr10	56879789	56879989	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	447908.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	1.62	2.77	0.0	3.62	3.27	3.76	13.62	9.84	1.38	7.03	4.02	1.25
Merged-chr10-77515853-3	chr10	77515738	77515938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133998)	promoter-TSS (NM_133998)	-25.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	135.68	117.72	135.2	114.63	141.14	173.72	90.68	126.76	150.07	163.69	181.9	80.2
Merged-chr19-12460690-1	chr19	12460590	12460790	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010821)	promoter-TSS (NM_010821)	-89.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	15.75	16.1	32.52	11.26	12.68	9.72	15.61	17.33	32.45	19.58	31.66	27.88
Merged-chr17-24073506-3	chr17	24073387	24073587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027008)	promoter-TSS (NM_027008)	-2.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	76.32	80.99	66.74	54.7	67.91	99.72	50.82	50.75	95.0	97.41	68.34	58.58
Merged-chr17-70707148-3	chr17	70707073	70707273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	139604.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	29.88	15.34	22.25	12.87	31.09	26.97	12.95	21.7	19.47	28.12	23.62	19.74
Merged-chr9-61914568-3	chr9	61914458	61914658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-48.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	56.53	52.07	60.47	47.46	69.14	79.96	51.15	34.63	106.8	77.32	88.94	59.21
Merged-chr15-38602351-3	chr15	38602277	38602477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-7443.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	23.82	28.93	34.23	20.11	37.23	34.49	31.89	56.83	45.63	24.1	40.7	34.46
Merged-chr13-113436483-3	chr13	113436381	113436581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	66363.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	107.01	102.12	148.32	126.29	34.77	30.42	21.26	30.98	30.68	31.63	46.23	21.93
Merged-chr15-38644423-3	chr15	38644339	38644539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17465.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	23.82	25.4	33.66	45.85	49.91	45.78	48.5	54.45	66.87	74.81	49.75	37.59
Merged-chr11-121681007-3	chr11	121680906	121681106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7855.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	70.66	81.75	74.73	60.73	112.09	108.81	60.12	74.05	77.3	98.41	126.63	62.34
Merged-chr4-56947461-3	chr4	56947349	56947549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175518)	promoter-TSS (NM_175518)	-20.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	60.57	62.88	67.31	84.46	79.37	86.23	69.42	102.11	84.38	87.37	134.67	67.04
Merged-chr16-75766952-3	chr16	75766849	75767049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030201)	promoter-TSS (NM_030201)	-131.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	290.73	340.32	277.24	318.14	299.87	384.75	244.15	351.9	381.18	422.77	461.78	273.8
Merged-chr11-68968050-3	chr11	68967954	68968154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028048)	promoter-TSS (NM_028048)	-77.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	27.46	23.64	35.37	28.56	38.46	41.08	26.24	42.14	56.25	35.65	61.81	21.3
Merged-chr5-33936451-3	chr5	33936360	33936560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-202.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	111.45	162.49	131.78	145.19	133.37	160.55	96.99	115.54	197.28	179.25	159.29	109.33
Merged-chr9-94433628-3	chr9	94433530	94433730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	104451.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	52.09	47.79	87.85	61.13	66.27	64.6	43.85	81.06	83.4	90.38	90.95	58.27
Merged-chr7-19320149-3	chr7	19320039	19320239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10094.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	187.76	174.06	211.07	181.79	212.73	253.99	144.16	171.51	228.35	242.01	276.37	133.14
Merged-chr17-20945267-3	chr17	20945156	20945356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-198.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	419.14	409.99	404.45	431.16	445.92	532.76	457.07	480.65	557.22	554.32	642.17	345.85
Merged-chr10-12735918-3	chr10	12735825	12736025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	125810.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	33.52	28.93	54.19	37.0	42.96	52.68	77.4	74.05	68.45	49.21	91.95	52.32
Merged-chr13-14613134-3	chr13	14613032	14613232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029271)	promoter-TSS (NM_029271)	-95.0	NM_029271	75398.0	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	245.51	269.89	240.16	252.58	335.87	323.61	197.31	362.86	376.85	389.63	472.84	208.95
Merged-chr5-88764988-3	chr5	88764899	88765099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	-14.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	247.12	239.71	262.41	286.77	276.96	303.85	288.66	328.26	357.78	298.75	521.58	231.19
Merged-chrUn_JH584304-7128-1	chrUn_JH584304	7028	7228	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52561.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	42.68	62.26	49.75	34.77
Merged-chr18-62192212-3	chr18	62192124	62192324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12124.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	22.61	22.89	27.38	24.53	35.59	26.65	21.59	27.5	26.75	26.61	28.64	17.23
Merged-chr1-192078635-3	chr1	192078559	192078759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	13940.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	75.51	66.65	112.38	130.31	63.0	74.63	79.72	116.55	77.5	63.27	88.44	64.85
Merged-chrX-13347359-6	chrX	13347245	13347445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66323.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	18.57	12.83	17.68	12.07	15.14	11.29	29.9	19.96	15.74	11.05	20.1	14.1
Merged-chr10-15215010-1	chr10	15214910	15215110	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	454721.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	6.86	6.29	2.28	2.41	9.0	18.81	13.29	18.76	3.15	4.02	2.01	2.51
Merged-chr1-134095211-3	chr1	134095122	134095322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16020.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	58.95	45.53	65.6	78.43	63.82	58.64	57.13	80.75	76.31	63.77	110.55	42.92
Merged-chr18-84688504-3	chr18	84688420	84688620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2818.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	31.09	28.67	44.5	45.05	42.14	43.27	24.25	35.47	64.12	57.24	62.31	41.66
Merged-chr10-128547840-3	chr10	128547746	128547946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	-102.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	138.5	134.06	132.35	139.16	130.91	172.15	111.94	141.42	178.0	180.26	211.55	150.37
Merged-chr4-59803592-3	chr4	59803491	59803691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2059.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	50.07	33.7	23.39	43.04	43.36	61.15	43.85	61.35	48.58	42.68	60.8	28.51
Merged-chr13-100201921-3	chr13	100201830	100202030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	192.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	10.9	8.3	22.25	18.9	13.91	25.71	20.26	7.6	13.77	25.61	27.64	13.47
Merged-chr11-63051258-3	chr11	63051165	63051365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10394.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	114.27	105.39	121.51	149.62	161.19	137.97	105.3	155.58	128.63	100.42	178.38	83.64
Merged-chr4-53159920-3	chr4	53159821	53160021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	-26.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	224.51	202.23	209.93	202.31	217.23	274.38	187.34	196.12	251.76	264.11	291.44	201.12
Merged-chr3-108997929-3	chr3	108997831	108998031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	29676.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	30.69	19.37	20.54	22.93	17.59	23.52	17.94	19.32	37.37	31.13	34.67	19.11
Merged-chr3-87508430-3	chr3	87508322	87508522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17156.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	38.36	41.25	43.35	20.91	30.27	61.46	20.26	27.48	64.91	62.76	50.25	24.75
Merged-chr17-66123653-3	chr17	66123579	66123779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001348292, exon 1 of 27)	5' UTR (NM_001348292, exon 1 of 27)	159.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	44.42	51.31	52.48	41.43	54.0	52.37	51.82	53.69	49.96	55.23	61.81	41.04
Merged-chr8-34965771-3	chr8	34965658	34965858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175091)	promoter-TSS (NM_175091)	-68.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	159.1	135.32	165.43	152.84	197.19	238.63	151.47	212.66	255.5	245.53	259.78	155.38
Merged-chr6-128838470-3	chr6	128838369	128838569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	4.5SRNA|scRNA|scRNA	-12154.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	35.53	19.87	16.54	14.88	21.68	23.83	13.62	15.0	22.03	22.09	20.6	13.78
Merged-chr6-116679789-3	chr6	116679702	116679902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5966.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	93.68	85.27	128.35	117.84	108.82	94.7	89.35	125.61	86.35	111.47	163.81	73.62
Merged-chr11-114913073-3	chr11	114912958	114913158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21328.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	88.03	88.29	94.13	82.45	74.87	88.11	73.41	79.46	84.58	106.95	84.42	72.68
Merged-chr9-69398020-3	chr9	69397944	69398144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145618)	promoter-TSS (NM_145618)	46.0	NM_145618	93697.0	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	14.13	22.64	19.4	20.51	18.82	13.48	14.95	16.26	26.55	26.11	21.61	26.63
Merged-chr1-195092346-3	chr1	195092205	195092405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132621)	promoter-TSS (NR_132621)	-57.0	NM_010778	17221.0	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	15.75	17.86	26.81	33.38	24.14	29.79	32.22	48.93	27.93	26.11	43.21	17.23
Merged-chr4-101686565-3	chr4	101686455	101686655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30852.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	23.02	13.58	58.76	54.3	61.37	52.37	95.0	104.89	102.87	86.86	170.84	65.47
Merged-chr18-32361592-3	chr18	32361470	32361670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-15647.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	65.01	53.07	55.33	67.17	57.27	77.45	58.13	82.35	88.71	60.75	87.43	44.17
Merged-chrX-105064455-3	chrX	105064349	105064549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015467, intron 4 of 4)	intron (NR_015467, intron 4 of 4)	5675.0	NR_015467	71445.0	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	22.61	13.58	26.81	20.51	26.18	24.15	29.56	48.53	38.94	23.1	46.73	22.24
Merged-chr19-56723425-3	chr19	56723319	56723519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	1047.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	17.77	18.61	7.99	13.67	20.05	23.2	23.92	13.57	13.77	20.08	16.08	17.23
Merged-chr14-20826166-1	chr14	20826066	20826266	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-10496.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.81	1.76	0.57	3.62	39.68	40.45	20.93	41.52	2.95	3.51	3.52	4.39
Merged-chr5-140505513-3	chr5	140505425	140505625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021528)	promoter-TSS (NM_021528)	-84.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	146.58	153.18	108.96	111.01	162.0	212.6	106.63	113.72	196.29	197.83	193.46	93.35
Merged-chr2-170252843-3	chr2	170252715	170252915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103546.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	37.55	30.69	51.34	49.07	36.0	33.87	33.55	39.76	53.7	41.67	46.73	39.47
Merged-chr9-100570138-3	chr9	100570034	100570234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	951.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	25.44	14.09	27.38	29.76	29.46	35.43	31.56	51.73	39.93	18.58	68.84	21.3
Merged-chr18-30507185-3	chr18	30507073	30507273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	234308.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	47.24	59.11	66.17	34.59	62.59	41.71	37.2	41.3	102.47	80.34	103.51	33.52
Merged-chr12-104752129-3	chr12	104752037	104752237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-185.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	93.68	86.02	85.57	92.1	93.68	101.28	72.75	82.71	114.28	102.93	110.04	49.5
Merged-chr10-96332972-3	chr10	96332875	96333075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	106768.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	149.4	103.63	147.75	171.34	127.23	127.62	149.81	157.01	160.69	147.62	243.7	110.27
Merged-chr15-36173979-3	chr15	36173889	36174089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-21.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	49.67	42.26	57.62	58.72	63.0	46.72	24.58	66.5	85.76	77.32	60.3	55.76
Merged-chr10-78134611-3	chr10	78134508	78134708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35160.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	40.78	35.21	34.8	18.9	37.23	41.39	29.23	28.51	53.7	44.19	54.27	21.93
Merged-chr11-26637898-2	chr11	26637806	26638006	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43986.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.27	9.56	2.28	8.45	29.05	36.69	13.29	18.98	40.52	34.14	22.11	7.52
Merged-chr17-6746202-3	chr17	6746101	6746301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	36579.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	75.51	64.89	58.76	108.19	110.46	100.03	95.67	122.38	80.05	71.8	112.56	46.99
Merged-chr1-144006709-3	chr1	144006615	144006815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2566.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	111.04	109.92	85.0	119.86	104.73	111.63	86.7	120.22	122.54	132.56	106.53	64.85
Merged-chr16-95724360-3	chr16	95724243	95724443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A1|LTR|ERVK	21936.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	90.45	67.16	82.15	99.75	121.09	87.8	92.68	164.22	114.08	87.87	117.08	75.18
Merged-chr16-75887010-1	chr16	75886910	75887110	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22256.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	8.08	6.79	9.7	4.02	9.82	18.81	4.98	14.69	20.06	18.58	12.56	4.7
Merged-chr9-83536258-3	chr9	83536127	83536327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12111.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	29.48	21.63	38.79	28.56	38.86	26.97	23.58	50.22	35.6	21.59	39.7	23.81
Merged-chr14-21745289-3	chr14	21745179	21745379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007268, intron 3 of 7)	MER91C|DNA|hAT-Tip100	-2400.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	34.32	50.81	69.03	41.83	58.5	63.34	92.34	91.23	72.58	33.14	70.85	47.62
Merged-chr19-42564113-3	chr19	42563968	42564168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177464, exon 2 of 7)	exon (NM_177464, exon 2 of 7)	45263.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	18.57	16.6	29.09	43.44	15.55	14.11	23.92	40.99	14.36	17.57	27.13	13.16
Merged-chr1-118389388-3	chr1	118389297	118389497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359346, exon 1 of 38)	5' UTR (NM_001359346, exon 1 of 38)	339.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	125.58	104.64	118.65	123.48	141.96	138.91	111.28	155.61	163.25	120.0	162.3	97.74
Merged-chr1-171370045-3	chr1	171369950	171370150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027893)	promoter-TSS (NM_027893)	-123.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	21.4	32.45	28.52	19.31	22.91	23.2	10.3	29.38	24.19	26.61	45.22	31.01
Merged-chr10-86021837-3	chr10	86021751	86021951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-78.0	NM_153195	69754.0	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	90.05	127.27	162.58	134.33	143.19	140.48	117.26	145.35	151.25	169.71	223.6	96.49
Merged-chr11-17008703-3	chr11	17008604	17008804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019549)	promoter-TSS (NM_019549)	14.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	130.83	126.27	126.64	115.03	139.1	192.53	115.26	123.9	199.44	189.8	220.09	88.97
Merged-chrX-99049423-3	chrX	99049326	99049526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	6845.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	16.15	16.85	18.83	23.73	20.05	24.77	20.59	31.74	22.23	28.62	37.18	21.62
Merged-chr18-75018719-3	chr18	75018615	75018815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027727)	promoter-TSS (NM_027727)	-57.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	90.45	93.82	127.21	92.51	126.41	124.17	81.38	134.27	143.19	116.49	178.88	85.21
Merged-chr6-108659958-3	chr6	108659863	108660063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-666.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	78.34	67.91	73.02	80.04	76.91	99.09	91.01	72.73	86.74	85.86	89.94	55.76
Merged-chr17-80206803-2	chr17	80206716	80206916	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360435, intron 1 of 6)	CpG	489.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	46.03	72.44	64.46	66.36	63.82	76.83	73.41	90.56	122.93	121.01	134.16	80.2
Merged-chr5-125465828-3	chr5	125465718	125465918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10055.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	120.73	125.26	151.74	142.38	141.14	195.36	88.69	133.71	190.59	192.81	237.67	93.04
Merged-chr15-81585250-3	chr15	81585150	81585350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-964.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	144.16	123.0	117.51	146.0	120.28	158.35	78.06	102.22	153.81	166.7	167.33	102.12
Merged-chr5-105745523-3	chr5	105745445	105745645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	44735.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	45.23	16.1	27.95	25.74	33.14	36.06	22.59	35.44	50.35	42.18	65.83	31.95
Merged-chr19-9993215-3	chr19	9993122	9993322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011913, intron 3 of 11)	intron (NM_011913, intron 3 of 11)	8411.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	21.0	22.64	23.39	12.07	16.36	23.83	8.3	13.74	29.11	25.61	38.19	25.06
Merged-chr9-73113455-3	chr9	73113341	73113541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-28.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	40.38	36.22	36.51	34.19	49.91	43.27	23.92	35.16	77.5	70.29	78.89	51.69
Merged-chr11-87591978-3	chr11	87591861	87592061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-205.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	277.41	278.44	327.44	321.36	342.83	372.21	295.3	320.22	436.65	444.36	535.65	294.47
Merged-chr2-32395917-6	chr2	32395784	32395984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-6.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	16.56	15.85	14.26	14.08	19.23	28.54	14.62	12.9	28.72	36.65	40.7	29.13
Merged-chr3-101597903-3	chr3	101597795	101597995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6812.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	32.3	31.94	38.22	47.86	50.32	38.88	18.27	42.53	41.7	44.69	50.25	24.43
Merged-chr6-127561739-3	chr6	127561636	127561836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-16239.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	26.25	33.2	26.24	24.94	25.77	36.69	12.95	22.91	32.65	34.14	37.69	25.37
Merged-chr12-54985135-3	chr12	54985031	54985231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 2 of 26)	CpG	1205.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	33.52	60.12	41.07	28.15	38.86	62.71	55.47	30.81	47.99	55.23	55.27	35.09
Merged-chr15-84235866-3	chr15	84235769	84235969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3826.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	115.49	102.12	108.39	115.43	151.37	147.69	92.34	158.38	166.79	145.11	211.04	137.84
Merged-chr5-45669802-3	chr5	45669694	45669894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	-86.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	144.16	146.39	154.59	180.59	239.73	225.15	138.52	241.18	237.8	186.78	303.5	99.62
Merged-chr5-140616863-3	chr5	140616773	140616973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9532.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	127.2	139.09	160.87	82.05	145.64	221.07	102.31	135.93	184.1	176.24	186.92	94.92
Merged-chr8-94098487-3	chr8	94098385	94098585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026116, exon 1 of 17)	5' UTR (NM_026116, exon 1 of 17)	326.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	138.1	135.32	168.86	136.75	156.69	218.25	94.0	157.6	218.13	199.34	252.25	105.88
Merged-chr8-84415281-2	chr8	84415221	84415421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-43.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	21.4	29.93	17.68	30.57	22.5	33.24	27.57	32.83	1.38	0.0	1.0	1.25
Merged-chr1-184732766-3	chr1	184732695	184732895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-302.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	69.86	71.69	72.45	74.41	84.68	77.45	64.77	68.61	72.38	79.33	85.92	44.8
Merged-chr11-3177415-3	chr11	3177314	3177514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	16049.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	22.61	34.71	18.25	19.71	40.5	34.18	45.51	29.92	0.2	0.0	0.0	0.63
Merged-chr2-155381789-3	chr2	155381682	155381882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178111)	promoter-TSS (NM_178111)	-74.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	76.32	50.31	61.04	66.36	58.91	80.9	52.48	52.09	91.26	88.37	75.87	64.53
Merged-chr8-123983025-3	chr8	123982910	123983110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019552, exon 1 of 13)	5' UTR (NM_019552, exon 1 of 13)	112.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	107.41	118.97	101.54	82.05	103.09	131.07	78.06	127.01	86.54	88.87	98.49	34.15
Merged-chr15-79403276-3	chr15	79403178	79403378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253817)	promoter-TSS (NM_001253817)	0.0	NM_001253819	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	38.36	40.75	21.68	31.77	35.18	68.36	28.23	31.18	51.14	40.67	51.76	38.85
Merged-chr12-108631263-3	chr12	108631167	108631367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	L1MEc|LINE|L1	-4486.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	63.8	80.49	95.84	104.97	85.09	84.98	90.68	100.21	70.02	59.25	91.95	61.4
Merged-chr6-29917042-3	chr6	29916942	29917142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104576)	promoter-TSS (NR_104576)	29.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	29.88	31.19	29.09	27.35	31.09	44.53	22.26	30.25	32.26	28.12	39.7	19.74
Merged-chr8-47917870-3	chr8	47917778	47917978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	72673.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	29.48	17.86	23.39	39.42	18.82	17.25	29.23	40.37	27.73	19.58	26.13	19.42
Merged-chr9-95572784-3	chr9	95572670	95572870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12953.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	117.5	103.88	184.83	149.62	144.82	150.51	174.06	177.11	157.74	127.03	198.48	121.86
Merged-chr11-3164170-2	chr11	3164065	3164265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	B2_Mm2|SINE|B2	29298.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	18.57	27.42	15.4	18.1	24.55	20.7	26.57	17.05	1.57	0.5	3.52	1.57
Merged-chr19-5952191-3	chr19	5952106	5952306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 7 of 17)	PB1D10|SINE|Alu	12000.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	79.55	45.28	69.03	40.62	61.37	121.35	52.15	61.68	83.59	72.3	89.44	39.16
Merged-chr4-155831526-3	chr4	155831372	155831572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025338, exon 1 of 4)	5' UTR (NM_025338, exon 1 of 4)	203.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	34.32	31.94	34.23	35.39	40.09	46.41	35.54	37.6	50.35	61.26	64.82	39.78
Merged-chr9-65021697-3	chr9	65021579	65021779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	38.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	30.69	35.72	22.25	35.8	34.36	52.99	23.25	31.12	36.58	45.69	44.72	27.88
Merged-chrX-72918480-3	chrX	72918392	72918592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019405)	promoter-TSS (NM_019405)	-29.0	NM_010941	18194.0	Mm.38792	NM_010941	ENSMUSG00000031349	Nsdhl	AI747449|Bpa|H105E3|Str|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding	79.95	56.34	115.8	74.81	85.91	85.29	75.07	109.79	96.77	94.9	143.21	64.22
Merged-chr9-15709535-3	chr9	15709450	15709650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357565)	promoter-TSS (NM_001357565)	-188.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	50.47	53.58	75.3	78.83	48.68	66.79	99.65	84.93	56.25	56.24	70.85	75.18
Merged-chr7-118705771-3	chr7	118705673	118705873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-35.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	38.76	48.29	38.22	37.0	59.73	64.28	32.22	57.36	97.16	86.36	98.99	60.15
Merged-chr4-149307829-3	chr4	149307703	149307903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290995)	promoter-TSS (NM_001290995)	-70.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	98.53	95.58	85.0	116.64	102.28	111.95	79.39	93.56	135.52	130.55	170.34	69.86
Merged-chr7-135715833-3	chr7	135715727	135715927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	552.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	92.47	80.99	82.72	34.59	48.68	106.61	37.87	29.44	110.93	91.89	85.42	29.13
Merged-chr2-4919468-1	chr2	4919368	4919568	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	472.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	4.04	5.79	7.99	7.64	40.91	47.35	27.24	45.98	4.52	11.55	3.52	4.39
Merged-chr8-84908662-3	chr8	84908549	84908749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	25.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	141.73	162.99	178.55	175.36	164.87	246.47	138.85	172.68	200.03	189.8	234.16	104.94
Merged-chr19-3323328-3	chr19	3323222	3323422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	21.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	111.85	95.58	58.19	63.15	69.14	99.09	70.09	57.98	86.74	94.4	88.44	62.03
Merged-chr13-37858028-4	chr13	37857851	37858051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-30483.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	37.96	46.78	31.38	39.01	34.36	42.96	38.2	32.3	47.6	49.71	40.7	31.33
Merged-chr1-77515203-3	chr1	77515114	77515314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-126.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	26.65	23.39	38.22	36.6	41.32	41.71	47.5	47.61	28.13	31.13	61.3	19.42
Merged-chr2-30133216-3	chr2	30133109	30133309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-537.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	44.01	30.43	26.81	16.49	37.23	57.07	19.93	21.03	53.11	62.26	38.19	20.68
Merged-chr8-81767877-3	chr8	81767782	81767982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425320.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	33.52	13.83	29.09	16.09	17.59	22.89	16.61	28.18	27.34	19.08	41.2	19.74
Merged-chr19-3911878-3	chr19	3911783	3911983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271443, intron 1 of 6)	intron (NM_001271443, intron 1 of 6)	891.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	27.46	19.62	18.25	32.98	36.41	30.1	14.28	24.53	37.17	31.63	35.68	17.23
Merged-chr10-40247030-3	chr10	40246931	40247131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023323)	promoter-TSS (NM_023323)	8.0	NM_023323	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	76.72	48.29	26.24	45.85	79.78	62.71	34.88	42.65	84.97	75.82	84.92	33.52
Merged-chr7-99828386-3	chr7	99828286	99828486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016720)	promoter-TSS (NM_016720)	31.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	20.59	16.85	25.67	21.32	37.64	45.15	22.92	19.79	39.14	27.11	39.7	17.54
Merged-chr19-61199787-3	chr19	61199687	61199887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23478.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	232.18	308.62	293.21	388.12	293.74	258.07	231.86	338.3	306.05	310.3	397.46	295.72
Merged-chr19-47731645-3	chr19	47731549	47731749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-107.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	159.9	134.06	194.53	117.84	184.91	223.26	100.32	174.31	195.51	202.35	310.53	103.06
Merged-chrX-59817927-3	chrX	59817830	59818030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON4|Unknown|Unknown	-181534.0	NM_007979	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	29.07	24.4	21.11	50.27	26.18	41.71	33.88	50.44	65.89	56.24	92.96	23.18
Merged-chr5-124552850-3	chr5	124552788	124552988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	24.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	85.6	59.36	55.9	40.62	63.41	77.14	40.52	51.25	74.54	67.78	70.85	41.98
Merged-chr13-97559852-3	chr13	97559730	97559930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-170.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	41.19	49.3	39.36	57.11	44.59	66.16	35.87	53.1	58.02	51.72	65.32	30.39
Merged-chr15-80117357-3	chr15	80117262	80117462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_207708, exon 4 of 4)	3' UTR (NM_207708, exon 4 of 4)	-15792.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	17.77	14.09	14.26	18.1	16.77	30.42	11.96	25.74	46.03	18.08	40.7	23.18
Merged-chr5-136170202-3	chr5	136170096	136170296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178751, intron 1 of 2)	intron (NM_178751, intron 1 of 2)	460.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	48.46	44.02	24.53	27.35	43.77	52.05	37.2	33.73	44.45	37.16	35.17	19.74
Merged-chr4-141147544-3	chr4	141147457	141147657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-365.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	34.32	30.94	37.65	24.13	41.73	42.96	28.9	37.93	61.37	71.3	55.78	38.53
Merged-chr13-21506372-3	chr13	21506303	21506503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_026798, intron 1 of 1)	intron (NR_026798, intron 1 of 1)	121.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	28.67	30.18	34.8	51.08	33.14	36.06	51.82	45.56	27.73	28.62	54.27	31.95
Merged-chr1-45925576-3	chr1	45925478	45925678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	16.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	46.44	25.4	58.76	68.78	66.27	35.75	32.55	72.06	43.27	46.19	73.36	63.91
Merged-chr10-94923460-3	chr10	94923371	94923571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21107.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	58.95	57.1	91.27	92.1	59.73	64.6	72.75	107.02	76.91	46.7	127.13	65.47
Merged-chr2-164071209-3	chr2	164071085	164071285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291155)	promoter-TSS (NM_001291155)	-16.0	NM_001291155	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	123.16	109.92	132.92	106.99	149.73	160.55	103.31	111.48	171.51	182.26	230.64	111.52
Merged-chr11-79225091-3	chr11	79225000	79225200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17924.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	25.84	25.15	43.93	40.62	27.82	59.89	17.27	23.52	41.7	46.7	56.28	16.92
Merged-chr17-35740582-3	chr17	35740545	35740745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31805.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	51.28	35.47	62.18	48.26	36.41	84.35	58.13	55.63	65.3	52.22	69.34	43.54
Merged-chr15-74721092-3	chr15	74720995	74721195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198607)	promoter-TSS (NM_198607)	-139.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	112.26	135.57	107.82	116.24	132.96	146.44	104.97	145.63	142.8	148.12	186.92	86.15
Merged-chr2-3713395-3	chr2	3713296	3713496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-62.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	123.16	122.75	91.84	109.8	117.82	143.62	83.37	100.79	158.33	165.69	154.26	89.28
Merged-chr4-41760434-3	chr4	41760325	41760525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	-18.0	NM_001163401	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	61.78	53.58	79.86	74.0	72.82	71.81	56.14	103.82	105.62	84.86	123.11	69.23
Merged-chr6-91441421-3	chr6	91441321	91441521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	434.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	20.19	18.86	16.54	10.46	19.64	20.38	14.28	29.1	29.5	17.07	24.12	26.63
Merged-chr8-84197691-3	chr8	84197584	84197784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10834.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	93.28	61.62	50.77	56.31	88.78	97.52	49.49	48.65	76.12	70.29	69.34	35.4
Merged-chr3-106785316-3	chr3	106785187	106785387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	4862.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	79.95	55.08	65.03	64.35	67.5	80.59	47.17	69.62	88.31	83.35	64.82	45.74
Merged-chr11-116018318-3	chr11	116018227	116018427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5608.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	28.67	23.14	22.82	29.76	29.86	39.51	6.98	10.71	33.44	36.65	30.15	23.81
Merged-chr14-73385325-3	chr14	73385223	73385423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008410)	promoter-TSS (NM_008410)	-34.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	59.76	48.29	45.64	57.11	62.59	60.21	50.82	60.7	65.89	59.75	80.9	40.1
Merged-chr1-171050993-3	chr1	171050894	171051094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010188)	TTS (NM_010188)	8400.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	18.17	12.58	26.81	17.29	24.55	22.89	19.6	26.61	31.47	22.59	37.18	27.25
Merged-chr12-79191904-3	chr12	79191805	79192005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-50.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	27.05	18.61	20.54	23.33	29.46	22.89	15.28	22.01	42.09	29.62	53.26	18.8
Merged-chr1-191180615-3	chr1	191180536	191180736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	2697.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	25.84	39.49	39.93	58.32	27.41	24.15	22.92	33.0	31.86	28.62	41.71	21.62
Merged-chr13-102684892-3	chr13	102684782	102684982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8665.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	25.44	19.62	34.8	16.49	16.36	28.22	17.61	29.1	39.93	37.66	39.19	25.37
Merged-chr1-127225254-3	chr1	127225165	127225365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20279.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	28.67	31.69	28.52	36.6	31.91	27.59	30.23	42.7	41.11	29.12	39.7	26.63
Merged-chr14-55793615-3	chr14	55793503	55793703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4746.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	26.25	38.48	35.37	19.31	33.96	42.02	15.61	29.33	42.68	46.7	31.15	27.88
Merged-chr14-104995794-3	chr14	104995708	104995908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A1|LTR|ERVL	118868.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	39.98	22.39	59.9	34.19	29.46	22.89	37.2	51.06	47.01	28.62	45.73	34.77
Merged-chr3-90514417-3	chr3	90514325	90514525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	-10.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	44.42	35.97	44.5	48.26	50.32	34.81	27.57	51.42	51.14	31.13	49.24	25.69
Merged-chr11-100850575-3	chr11	100850470	100850670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	15.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	67.03	44.77	50.77	31.37	52.77	63.03	21.26	40.65	75.33	89.88	84.92	56.7
Merged-chr9-118674418-3	chr9	118674334	118674534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-37258.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	165.96	120.73	189.39	144.39	183.69	223.26	168.41	162.93	238.98	230.47	331.64	152.87
Merged-chr4-62630150-3	chr4	62630042	62630242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	10470.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	39.57	26.66	27.38	24.13	32.32	37.63	19.27	40.26	30.88	29.12	32.66	22.87
Merged-chr2-119896856-1	chr2	119896756	119896956	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-372.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	24.63	27.42	22.25	13.27	22.5	46.41	6.98	14.1	22.42	34.65	20.6	13.78
Merged-chr11-120353816-3	chr11	120353722	120353922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5144.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	93.68	78.98	101.54	95.72	130.09	121.67	78.72	99.65	127.06	161.68	207.53	72.36
Merged-chr3-19628746-3	chr3	19628638	19628838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15722.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	160.31	159.97	131.78	153.24	128.87	172.47	162.1	124.32	225.6	203.35	190.44	124.99
Merged-chr12-100925192-3	chr12	100925090	100925290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-16992.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	33.92	11.82	28.52	16.49	33.14	34.18	16.94	31.18	28.52	29.12	24.62	16.92
Merged-chr1-131473983-3	chr1	131473882	131474082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	53379.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	41.59	42.76	55.9	40.62	50.32	51.11	29.9	24.62	48.19	52.22	47.23	31.95
Merged-chr6-32528272-3	chr6	32528187	32528387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	17146.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	52.9	46.53	63.32	55.1	75.68	82.47	56.8	73.15	67.46	73.31	92.96	44.48
Merged-chr19-6157375-3	chr19	6157273	6157473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7066.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	33.11	42.26	51.34	30.16	53.18	53.31	29.56	35.72	64.32	54.23	56.28	31.33
Merged-chr5-129008594-3	chr5	129008487	129008687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007941)	promoter-TSS (NM_007941)	-15.0	NM_007941	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	57.74	59.11	65.03	56.31	70.77	63.66	66.1	70.93	74.94	65.27	94.47	47.93
Merged-chr5-95935221-3	chr5	95935121	95935321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21718.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	53.7	69.67	91.27	52.69	115.37	134.52	102.64	103.6	120.37	102.93	95.97	49.81
Merged-chr7-143473672-3	chr7	143473579	143473779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008767)	promoter-TSS (NM_008767)	-76.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	51.28	36.47	22.25	35.8	40.09	38.57	25.91	44.13	54.29	36.65	61.3	34.15
Merged-chr17-24804305-3	chr17	24804188	24804388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029197)	promoter-TSS (NM_029197)	-94.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	19.38	17.61	12.55	22.12	27.41	28.22	16.61	17.86	19.28	24.1	18.09	18.17
Merged-chr14-52267543-1	chr14	52267443	52267643	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172601, intron 5 of 7)	L1MB3|LINE|L1	-11603.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	28.91	36.15	49.75	24.12
Merged-chr12-118301378-3	chr12	118301288	118301488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	52.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	114.27	121.74	103.25	132.32	160.78	180.62	164.42	175.71	151.65	166.7	288.43	96.8
Merged-chr4-53196177-3	chr4	53196095	53196295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36300.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	28.67	37.73	26.81	36.2	33.96	33.24	19.27	28.82	41.11	60.25	55.27	26.0
Merged-chr8-53434467-3	chr8	53434378	53434578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-77224.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	27.86	17.61	22.82	47.06	31.91	20.7	25.58	50.78	31.47	39.67	33.16	19.74
Merged-chr4-107364321-3	chr4	107364215	107364415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3469.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	19.79	12.58	28.52	15.69	41.32	32.3	18.93	27.06	23.01	41.17	31.66	15.98
Merged-chr7-16816305-3	chr7	16816194	16816394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133789, exon 1 of 18)	5' UTR (NM_133789, exon 1 of 18)	405.0	NM_001039878	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	17.77	23.14	25.67	23.73	23.73	27.59	25.91	22.96	32.85	41.17	37.18	18.48
Merged-chr7-143043131-3	chr7	143043026	143043226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-9624.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	35.94	38.23	43.93	35.39	29.46	64.28	29.23	45.9	47.21	62.76	51.25	25.06
Merged-chr1-86059595-3	chr1	86059511	86059711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5008.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	42.4	40.5	46.21	37.4	33.96	45.15	21.92	44.58	54.29	25.11	46.73	27.57
Merged-chr13-113500769-3	chr13	113500666	113500866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	2078.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	27.46	19.87	32.52	26.95	36.0	52.37	43.85	61.6	46.22	22.59	42.71	20.99
Merged-chr14-77850069-3	chr14	77849986	77850186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24831.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	120.73	105.39	162.01	184.61	155.87	158.98	172.73	209.1	206.33	168.21	254.76	137.84
Merged-chr17-53569903-3	chr17	53569797	53569997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2926.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	21.4	20.88	30.23	26.55	29.46	33.55	15.61	26.44	33.04	20.08	41.2	35.09
Merged-chr7-25278953-3	chr7	25278874	25279074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3205.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	43.61	37.98	55.33	38.61	59.73	50.17	32.22	32.07	58.81	44.19	74.37	36.65
Merged-chr18-66474015-3	chr18	66473914	66474114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15410.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	34.73	31.69	29.09	23.73	49.09	58.32	27.24	50.75	59.6	67.28	81.4	39.16
Merged-chrX-23692955-3	chrX	23692828	23693028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305675)	promoter-TSS (NM_001305675)	-123.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	98.53	97.09	82.15	128.3	106.37	141.11	85.04	85.93	122.54	138.08	154.26	73.93
Merged-chrX-142370136-3	chrX	142370042	142370242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	20393.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	35.94	43.51	42.21	61.13	53.59	77.14	53.48	79.26	61.37	44.19	75.87	44.8
Merged-chr18-66458576-3	chr18	66458481	66458681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-23.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	160.71	154.94	121.51	127.5	125.59	231.1	100.32	125.69	215.96	196.83	247.22	133.45
Merged-chr9-108662134-3	chr9	108662049	108662249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020520)	promoter-TSS (NM_020520)	51.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	25.84	19.37	38.79	31.77	34.77	35.12	22.26	20.22	47.8	32.64	49.75	26.63
Merged-chr13-52572088-3	chr13	52571975	52572175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	1150.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	27.46	20.12	41.64	32.58	52.37	40.76	54.14	53.78	60.97	39.67	78.39	30.7
Merged-chr1-155483833-3	chr1	155483736	155483936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	43275.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	68.24	69.67	80.43	95.72	77.73	80.59	77.73	93.39	74.54	72.81	119.09	58.27
Merged-chr12-77238059-3	chr12	77237962	77238162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016893)	promoter-TSS (NM_016893)	-42.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	39.17	37.73	37.65	46.25	48.27	58.32	47.17	54.81	51.14	38.16	67.33	41.98
Merged-chr19-6869586-3	chr19	6869476	6869676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-11365.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	96.1	71.69	58.19	68.37	82.23	99.72	40.19	82.91	76.71	81.84	79.39	31.64
Merged-chr15-98763257-3	chr15	98763166	98763366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007478)	promoter-TSS (NM_007478)	-148.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	45.63	54.08	39.36	41.43	56.87	51.74	21.59	32.41	63.14	63.77	62.31	43.54
Merged-chr2-155819788-1	chr2	155819688	155819888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-585.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	16.96	11.32	8.56	10.46	11.45	8.78	9.97	7.74	17.7	13.56	14.07	11.59
Merged-chr5-148483445-3	chr5	148483312	148483512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68261.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	45.63	56.85	67.31	68.37	37.23	52.68	40.52	64.77	73.17	55.23	79.39	45.42
Merged-chr14-47351054-3	chr14	47350944	47351144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22816.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	111.85	95.83	140.33	159.67	105.96	151.14	130.54	186.08	128.44	83.35	127.63	105.88
Merged-chr9-44605232-5	chr9	44605113	44605313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357703, exon 1 of 14)	intron (NM_001110826, intron 1 of 13)	321.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	10.9	19.87	13.12	4.42	11.45	22.58	10.63	11.13	19.08	27.11	25.12	31.95
Merged-chr2-61593092-3	chr2	61592988	61593188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-9.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	114.27	131.55	113.52	95.72	128.05	168.7	103.97	128.27	177.61	183.27	212.55	113.72
Merged-chr10-111997217-3	chr10	111997120	111997320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	44.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	29.48	33.2	29.09	32.58	32.73	42.02	39.2	23.22	56.25	39.67	76.88	33.21
Merged-chr17-80323920-2	chr17	80323800	80324000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145452, intron 1 of 17)	intron (NM_001145452, intron 1 of 17)	16493.0	NM_001145452	381112.0	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.0	1.01	1.14	0.0	19.64	36.69	21.59	31.93	23.41	31.63	33.67	17.23
Merged-chr7-98328532-3	chr7	98328421	98328621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-7313.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	79.95	64.89	90.13	97.73	47.87	58.32	47.5	59.86	44.65	37.66	55.78	35.4
Merged-chr13-69535407-1	chr13	69535307	69535507	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1543.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.02	7.8	2.85	5.23	12.68	12.54	10.3	16.43	8.26	4.02	5.53	10.96
Merged-chr12-112672043-1	chr12	112671943	112672143	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2233.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	3.23	2.52	4.56	0.0	4.91	5.02	9.63	3.7	11.21	6.53	15.58	5.95
Merged-chr9-21367647-3	chr9	21367531	21367731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-240.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	165.15	155.95	135.77	99.34	148.1	178.74	70.09	102.17	183.12	222.43	127.63	100.87
Merged-chr15-79768490-3	chr15	79768403	79768603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	5964.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	31.09	18.36	23.39	27.35	38.86	26.03	34.21	34.29	28.13	18.08	33.16	26.0
Merged-chr19-53313887-3	chr19	53313758	53313958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	CpG	2413.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	22.21	31.94	21.68	31.77	27.82	35.12	38.2	45.14	47.21	43.18	59.8	20.05
Merged-chrX-50972347-3	chrX	50972243	50972443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29633.0	NM_001190332	385354.0	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	23.42	23.9	24.53	29.76	38.46	39.82	34.88	49.88	33.63	29.12	42.71	22.24
Merged-chr17-39846554-3	chr17	39846452	39846652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	3555.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	638.8	872.05	610.39	640.7	209.87	238.32	167.41	112.99	182.92	270.63	236.67	286.33
Merged-chr11-97629792-3	chr11	97629694	97629894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175332)	promoter-TSS (NM_175332)	-78.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	62.59	50.81	60.47	39.82	60.96	57.38	45.18	53.41	68.64	61.26	79.89	38.53
Merged-chr9-25151343-1	chr9	25151243	25151443	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	438.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	25.04	32.45	21.68	30.97	23.73	44.53	48.83	29.5	35.6	42.68	37.69	38.53
Merged-chr8-119440599-3	chr8	119440515	119440715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	3453.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	33.11	43.77	26.24	58.72	41.32	64.28	57.47	46.29	49.17	54.23	52.26	27.57
Merged-chr14-33248745-3	chr14	33248639	33248839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31916.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	30.69	13.58	15.4	22.93	27.41	25.4	26.57	38.92	35.21	29.12	30.15	20.99
Merged-chr17-29492939-3	chr17	29492853	29493053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1908.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	47.65	45.02	49.06	32.58	54.41	52.99	39.86	30.36	47.6	49.71	62.31	54.51
Merged-chr13-22041354-3	chr13	22041256	22041456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175656)	promoter-TSS (NM_175656)	6.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	114.68	88.54	77.58	104.17	85.5	76.83	59.13	76.49	72.38	97.41	129.64	53.88
Merged-chr16-32003189-3	chr16	32003078	32003278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177103, exon 1 of 10)	5' UTR (NM_177103, exon 1 of 10)	109.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	96.1	90.55	45.07	63.55	74.87	115.71	42.19	67.49	90.28	97.41	103.01	75.18
Merged-chr15-80072216-3	chr15	80072119	80072319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6360.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	48.46	34.21	67.88	54.3	64.64	33.24	90.68	93.76	39.93	36.65	52.26	45.74
Merged-chr10-8519036-3	chr10	8518930	8519130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-205.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	78.34	70.18	69.03	82.05	58.5	56.76	52.15	69.48	53.3	74.31	70.85	58.58
Merged-chr13-94358973-3	chr13	94358901	94359101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	41.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	37.15	51.06	54.19	69.98	45.0	60.83	41.19	55.91	61.17	38.66	54.77	27.57
Merged-chr5-122158245-3	chr5	122158156	122158356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-23.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	144.56	140.1	107.25	97.33	125.19	137.66	75.73	74.66	175.05	200.84	177.38	84.9
Merged-chr3-90248868-3	chr3	90248759	90248959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013901, intron 1 of 3)	intron (NM_013901, intron 1 of 3)	667.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	95.3	73.7	66.17	62.34	108.82	137.66	73.08	86.47	123.13	97.41	108.54	64.85
Merged-chr19-12463904-3	chr19	12463804	12464004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3125.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	66.63	66.65	87.85	60.73	74.87	86.55	70.75	79.07	80.05	75.32	84.92	36.65
Merged-chr16-91917954-3	chr16	91917856	91918056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	13674.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	24.23	15.34	24.53	18.1	25.77	43.9	18.27	20.41	28.13	43.68	29.65	20.68
Merged-chr13-65242032-3	chr13	65241916	65242116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-36300.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	8.88	11.82	5.13	6.03	13.5	8.15	11.63	10.04	34.81	30.13	27.13	16.92
Merged-chr8-123224877-3	chr8	123224816	123225016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194446)	promoter-TSS (NM_194446)	75.0	NM_194444	234854.0	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	8.88	12.58	20.54	20.91	21.27	20.38	13.62	10.35	19.08	23.6	20.1	12.84
Merged-chr8-13660454-3	chr8	13660336	13660536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	17151.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	37.15	26.66	27.95	29.76	52.77	43.27	59.13	73.6	46.22	44.19	55.27	36.03
Merged-chr19-7057856-3	chr19	7057746	7057946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1078.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	50.88	45.78	50.2	67.17	67.5	66.16	33.22	72.79	94.02	63.77	67.33	31.64
Merged-chr3-52267958-1	chr3	52267858	52268058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-379.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	12.52	16.35	1.71	19.31	11.45	14.42	16.94	14.05	13.18	18.08	14.57	10.65
Merged-chr2-6322742-3	chr2	6322634	6322834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080548)	promoter-TSS (NM_001080548)	-23.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	64.61	68.16	55.9	64.75	63.0	64.6	42.19	62.89	66.09	79.33	91.95	43.23
Merged-chr17-67343145-3	chr17	67343057	67343257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	11302.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	89.64	80.74	85.57	82.45	116.59	153.02	135.19	148.15	127.26	128.04	127.63	83.02
Merged-chr18-54991273-3	chr18	54991167	54991367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	-1087.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	39.57	33.7	34.8	37.0	37.64	30.73	13.62	25.43	60.19	56.74	70.85	31.64
Merged-chr11-68514141-3	chr11	68514023	68514223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	MurERV4-int|LTR|ERVK	11104.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	56.94	68.16	44.5	37.0	57.27	102.54	35.54	30.81	57.04	61.76	59.29	28.82
Merged-chr4-3510846-3	chr4	3510729	3510929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26261.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	45.23	39.99	57.62	51.88	94.91	122.61	107.29	46.18	135.52	162.18	163.81	95.23
Merged-chr7-110689512-3	chr7	110689418	110689618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61861.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	46.44	44.02	49.63	35.8	58.5	97.21	42.85	36.22	83.2	75.82	81.9	26.31
Merged-chr19-6276094-3	chr19	6275981	6276181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-815.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	92.47	76.72	81.58	76.02	75.68	145.18	68.76	53.05	112.11	100.92	86.43	62.34
Merged-chr10-100487454-3	chr10	100487357	100487557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110013)	promoter-TSS (NM_001110013)	-110.0	NM_001110013	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	110.64	89.29	187.11	170.13	154.64	138.29	161.77	193.8	193.15	181.76	251.74	129.69
Merged-chr10-68204050-2	chr10	68203956	68204156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74670.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	18.98	10.82	26.81	23.73	19.23	26.03	17.27	41.92	1.57	4.02	7.54	2.82
Merged-chr11-78791656-3	chr11	78791532	78791732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34963.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	11.71	21.63	19.4	21.72	29.46	21.95	13.29	13.82	26.55	24.1	19.09	17.86
Merged-chr1-36471496-3	chr1	36471388	36471588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033570)	promoter-TSS (NM_033570)	-109.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	92.47	88.54	107.82	117.04	112.5	122.29	96.99	99.62	128.83	159.17	161.8	69.55
Merged-chr10-40847422-3	chr10	40847315	40847515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027879, intron 7 of 14)	intron (NM_027879, intron 7 of 14)	35728.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	29.88	20.63	35.37	55.1	33.14	25.09	53.15	58.63	31.67	26.11	59.8	29.76
Merged-chr1-86527085-1	chr1	86526985	86527185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	CpG-365	528.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	49.26	69.67	26.24	24.53	31.09	64.91	16.28	8.97	61.96	86.86	45.73	16.6
Merged-chr8-11009618-3	chr8	11009506	11009706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	CpG-13826	-1176.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	29.88	13.58	22.82	41.83	29.86	37.32	32.22	45.34	43.86	30.13	65.32	33.83
Merged-chr14-56812912-3	chr14	56812810	56813010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	921.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	35.53	33.2	42.78	34.19	40.09	37.32	14.95	23.41	48.98	61.76	50.25	36.97
Merged-chr11-69682034-3	chr11	69681935	69682135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	49.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	112.66	107.15	110.1	78.83	101.05	128.25	64.77	79.46	124.7	128.54	146.22	75.81
Merged-chr2-124704399-3	chr2	124704310	124704510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	50829.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	16.96	21.13	38.22	19.31	21.68	28.22	23.92	18.0	28.13	19.58	34.67	27.88
Merged-chr12-102705277-3	chr12	102705191	102705391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-422.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	42.8	58.1	50.77	43.04	47.87	53.62	46.84	38.05	47.4	60.75	55.27	33.21
Merged-chr19-41829836-3	chr19	41829709	41829909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	-161.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	28.67	36.97	15.4	35.8	31.09	23.83	33.55	22.85	59.2	68.79	55.27	41.98
Merged-chr7-67460032-3	chr7	67459942	67460142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87184.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	30.28	34.71	47.35	40.22	63.41	70.87	49.16	69.9	63.92	48.7	96.48	47.3
Merged-chr10-111103286-3	chr10	111103190	111103390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61512.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	181.3	148.9	184.26	197.48	187.37	227.34	180.37	250.63	229.14	197.33	344.2	183.26
Merged-chr17-7169465-3	chr17	7169394	7169594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-621.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	23.02	18.61	19.97	21.32	31.91	37.63	26.24	37.54	38.55	44.19	45.73	32.27
Merged-chr9-22096208-3	chr9	22096059	22096259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3094.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	44.01	48.54	41.07	51.08	60.14	67.73	54.81	45.5	80.05	75.82	113.06	57.95
Merged-chr10-20059089-3	chr10	20058993	20059193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-89827.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	39.98	28.42	38.22	42.63	47.05	35.12	42.52	49.12	21.05	19.08	32.16	23.18
Merged-chr19-8929497-3	chr19	8929413	8929613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009073)	promoter-TSS (NM_009073)	-157.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	88.43	68.42	80.43	75.21	69.55	60.21	48.83	73.09	76.91	102.93	125.62	59.83
Merged-chr5-92488357-3	chr5	92488259	92488459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	17298.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	36.75	34.96	41.07	40.62	49.5	49.86	74.74	55.35	61.37	57.74	84.42	34.15
Merged-chr4-108789438-3	chr4	108789352	108789552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-8364.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	19.38	15.09	40.5	36.2	27.41	39.51	19.27	39.31	27.34	24.1	21.61	13.78
Merged-chr7-4900414-1	chr7	4900314	4900514	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14803.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	1.62	0.0	1.71	0.0	0.0	1.57	1.33	1.85	18.29	15.57	26.63	23.81
Merged-chr17-34142666-2	chr17	34142555	34142755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	27.05	19.62	19.97	19.71	10.23	1.88	1.33	3.62	41.7	41.67	35.17	13.16
Merged-chr6-17622121-3	chr6	17622041	17622241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14869.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	32.3	33.45	42.78	52.69	46.64	28.54	33.55	43.57	45.83	51.21	47.23	35.4
Merged-chr2-128745960-3	chr2	128745853	128746053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47038.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	50.07	31.44	23.39	40.22	58.91	67.73	40.52	62.89	64.91	49.21	37.69	33.83
Merged-chr5-24540915-3	chr5	24540803	24541003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310476)	promoter-TSS (NM_001310476)	75.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	28.67	19.12	33.09	42.63	28.23	25.4	23.92	39.7	20.46	29.12	34.17	19.11
Merged-chr12-84802850-3	chr12	84802747	84802947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	29577.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	27.05	24.65	47.92	31.77	33.96	47.98	17.61	24.2	28.72	28.62	31.66	6.89
Merged-chr6-120866240-3	chr6	120866135	120866335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153516, intron 4 of 6)	intron (NM_153516, intron 4 of 6)	30005.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	25.44	23.9	40.5	27.75	19.23	24.77	10.96	22.37	45.63	34.14	36.68	32.89
Merged-chr10-117829893-3	chr10	117829768	117829968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16106.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	30.28	26.41	26.24	25.74	25.36	39.2	41.19	32.05	23.8	26.61	33.67	17.54
Merged-chr9-98296683-3	chr9	98296586	98296786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357446, exon 1 of 4)	5' UTR (NM_001357446, exon 1 of 4)	116.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	85.6	103.88	83.29	98.14	85.91	105.36	128.88	81.59	117.23	127.03	129.14	88.97
Merged-chr10-96374418-3	chr10	96374301	96374501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	148194.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	47.65	34.71	71.31	43.84	52.37	51.43	51.15	63.5	41.3	34.65	60.3	25.69
Merged-chr2-173337826-3	chr2	173337717	173337917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61284.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	51.28	42.01	55.9	66.77	61.77	76.51	51.15	91.63	74.94	74.81	128.13	35.4
Merged-chr16-11063279-3	chr16	11063174	11063374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3024.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	84.39	114.19	92.98	38.61	66.68	141.73	78.06	33.53	101.69	93.39	97.98	20.68
Merged-chr1-86582681-3	chr1	86582602	86582802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172974)	promoter-TSS (NM_172974)	83.0	NM_001360816	18582.0	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	47.24	76.97	78.15	102.16	72.82	64.91	103.31	64.26	73.36	76.32	78.39	72.68
Merged-chr17-56303246-3	chr17	56303130	56303330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010931)	promoter-TSS (NM_010931)	-107.0	NM_010931	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	55.72	46.78	25.1	15.28	54.0	80.59	23.25	31.68	81.04	78.83	67.33	16.6
Merged-chr6-83867199-3	chr6	83867086	83867286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35445.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	64.2	69.42	58.76	73.2	67.09	81.22	89.35	55.79	57.83	62.26	67.33	61.71
Merged-chr7-44849897-3	chr7	44849758	44849958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253920)	promoter-TSS (NM_001253920)	-149.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	44.42	37.23	25.1	22.93	30.27	35.75	33.88	33.03	45.24	44.69	41.2	34.77
Merged-chr9-107611801-3	chr9	107611690	107611890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2549.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	29.48	30.18	28.52	19.31	27.82	52.05	29.23	33.06	28.32	34.65	25.12	14.72
Merged-chrX-38635197-3	chrX	38635101	38635301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021550)	promoter-TSS (NM_021550)	-58.0	NM_021550	59048.0	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	96.1	100.11	123.22	116.24	127.64	157.41	109.28	133.32	139.85	146.61	161.3	99.31
Merged-chr11-60913797-3	chr11	60913699	60913899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-7.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	59.36	49.05	46.21	58.72	71.59	68.99	42.52	44.97	74.94	84.86	71.86	38.22
Merged-chr7-80789265-3	chr7	80789163	80789363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14068.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	28.67	25.4	23.96	18.1	31.5	37.0	14.28	20.41	41.89	41.67	42.71	23.81
Merged-chr7-140999491-3	chr7	140999383	140999583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11261.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	50.47	56.34	105.53	97.33	73.23	64.6	81.05	91.74	80.64	61.76	82.41	56.7
Merged-chr9-35265352-3	chr9	35265254	35265454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	2451.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	33.92	41.5	29.09	34.19	20.05	39.82	22.26	34.18	31.67	33.14	31.66	20.36
Merged-chr5-24039635-3	chr5	24039540	24039740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8950.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	52.09	53.58	79.29	63.95	94.5	75.26	36.87	73.35	88.71	81.34	64.32	27.57
Merged-chr13-42051656-3	chr13	42051544	42051744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-377.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	130.43	132.05	159.73	108.59	145.64	178.74	110.61	85.54	223.24	189.8	203.51	107.45
Merged-chr17-66519757-3	chr17	66519663	66519863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024448)	promoter-TSS (NM_024448)	-93.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	59.36	47.79	87.28	50.27	65.87	81.53	37.54	76.6	104.44	78.33	112.56	67.67
Merged-chr11-115190548-3	chr11	115190443	115190643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	RMER17C2|LTR|ERVK	3056.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	44.42	28.17	48.49	52.69	34.36	24.15	32.22	23.55	114.87	104.94	127.13	55.45
Merged-chr3-105047049-3	chr3	105046950	105047150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	5903.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	203.92	155.19	187.68	209.95	185.32	191.28	176.71	175.6	170.33	194.82	217.57	132.83
Merged-chr1-106375617-1	chr1	106375517	106375717	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171014.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	2.83	4.02	5.7	9.65	12.68	4.7	5.65	13.18	15.54	3.51	13.57	10.96
Merged-chr4-155943793-3	chr4	155943695	155943895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-18.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	49.26	44.77	77.01	51.88	74.46	89.37	43.51	67.23	112.9	102.93	153.76	68.92
Merged-chr10-60398628-3	chr10	60398523	60398723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 28 of 68)	intron (NM_001252635, intron 28 of 68)	-1103.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	77.53	58.35	64.46	81.65	72.82	75.88	47.17	66.95	80.84	107.95	70.85	46.36
Merged-chr2-150851450-3	chr2	150851356	150851556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8886.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	61.38	33.7	44.5	60.73	62.18	71.18	54.81	111.31	68.64	33.14	85.92	52.0
Merged-chr11-70668911-3	chr11	70668809	70669009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178116)	TTS (NM_178116)	507.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	140.12	132.3	128.35	125.49	132.55	168.39	113.93	105.25	151.06	186.28	186.42	80.2
Merged-chr6-116003705-3	chr6	116003602	116003802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8697.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	62.99	57.6	65.6	45.85	46.23	49.86	33.55	48.17	52.52	49.21	48.24	31.95
Merged-chr18-82863213-3	chr18	82863133	82863333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	7336.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	18.98	20.12	27.95	26.14	40.09	30.42	22.92	39.79	46.03	32.13	49.24	29.45
Merged-chr6-124662932-3	chr6	124662810	124663010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-194.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	224.51	251.02	280.66	252.98	247.51	301.03	227.87	217.63	301.13	290.72	381.38	204.25
Merged-chr3-96172420-3	chr3	96172322	96172522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-84.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	73.09	51.56	65.6	58.72	56.87	56.76	39.86	62.22	76.51	81.34	82.41	46.36
Merged-chr1-93125425-3	chr1	93125323	93125523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9817.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	25.84	28.42	51.34	34.19	43.36	31.04	24.58	46.46	39.53	33.14	56.78	29.13
Merged-chr1-59904166-1	chr1	59904066	59904266	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8840.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	2.42	1.76	3.42	8.04	6.14	4.39	8.64	14.02	5.31	5.02	8.54	2.82
Merged-chr9-123863817-3	chr9	123863722	123863922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1793.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	20.59	16.35	37.65	21.72	19.23	21.01	16.61	18.93	32.85	34.65	26.63	15.66
Merged-chr5-125273846-3	chr5	125273726	125273926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	67268.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	31.5	18.36	25.67	27.35	68.32	63.66	33.55	44.38	34.03	57.74	57.28	32.58
Merged-chr14-47000598-3	chr14	47000507	47000707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163433)	promoter-TSS (NM_001163433)	-733.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	57.34	47.29	61.04	42.63	42.14	54.25	40.86	45.25	56.45	63.77	50.75	34.15
Merged-chr3-14534309-3	chr3	14534197	14534397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163580, intron 1 of 18)	intron (NM_001163580, intron 1 of 18)	509.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	28.27	34.96	38.79	53.49	54.41	46.72	40.52	59.97	45.04	48.2	57.28	37.59
Merged-chr1-139422230-3	chr1	139422081	139422281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-202.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	58.15	44.52	66.17	78.03	90.82	81.22	56.8	87.93	83.2	98.41	114.57	53.88
Merged-chr14-70577709-3	chr14	70577622	70577822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-102.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	239.45	239.96	304.05	223.22	290.87	348.38	225.21	346.94	272.61	290.22	374.85	190.47
Merged-chr18-62224873-3	chr18	62224756	62224956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44756.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	38.76	26.66	25.67	46.66	21.27	33.24	13.95	23.75	26.55	21.09	60.8	20.68
Merged-chr1-72255260-2	chr1	72255157	72255357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11264.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	18.98	27.42	18.25	9.25	30.68	55.5	12.29	15.95	18.88	23.6	28.64	13.16
Merged-chr8-94370957-3	chr8	94370756	94370956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15573.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	10.09	12.07	13.12	10.86	13.09	13.48	17.94	9.56	21.05	11.55	16.58	9.08
Merged-chr5-73557225-3	chr5	73557123	73557323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153313, intron 8 of 9)	intron (NR_153313, intron 8 of 9)	66197.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	39.17	32.95	63.89	81.65	69.55	59.27	53.15	91.6	71.4	60.25	83.91	46.36
Merged-chr11-115654233-3	chr11	115654149	115654349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 3 of 5)	RSINE1|SINE|B4	-25954.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	35.94	33.2	43.35	59.93	34.77	36.69	23.58	56.02	47.6	37.66	42.71	29.45
Merged-chr11-9048531-2	chr11	9048422	9048622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037928)	promoter-TSS (NM_001037928)	-70.0	NM_001037928	626870.0	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	-	predicted gene 11992	protein-coding	6.46	5.79	2.28	8.45	27.82	17.25	20.93	19.99	28.13	21.59	46.23	26.31
Merged-chr9-123923702-3	chr9	123923612	123923812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	44980.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	23.02	18.61	26.81	18.1	13.91	22.89	12.62	13.77	16.13	16.07	20.1	15.66
Merged-chr7-90048915-3	chr7	90048823	90049023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110364, exon 6 of 6)	non-coding (NR_110364, exon 6 of 6)	19764.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	36.34	22.89	54.19	30.16	43.77	45.78	88.36	77.5	41.89	53.22	59.29	26.0
Merged-chr14-76152698-3	chr14	76152595	76152795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41804.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	59.76	56.85	79.86	72.4	56.46	88.74	42.52	58.51	95.2	75.82	87.43	47.93
Merged-chrX-42171044-3	chrX	42170933	42171133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	intron (NM_021465, intron 1 of 32)	20332.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	21.8	20.63	34.8	25.34	29.46	32.61	24.91	47.58	36.58	27.62	44.22	23.49
Merged-chr5-135912016-3	chr5	135911913	135912113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	22628.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	38.36	38.23	27.38	30.97	61.77	58.32	46.17	52.26	59.01	79.33	52.26	45.74
Merged-chr5-114661217-3	chr5	114661108	114661308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-2787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	68.24	74.7	79.29	82.05	69.96	74.94	49.49	62.3	70.81	74.81	88.44	59.83
Merged-chr4-45487949-3	chr4	45487839	45488039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	42889.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	73.49	54.33	63.32	121.06	72.41	54.25	76.07	99.81	71.2	60.75	94.47	51.38
Merged-chr2-68985480-3	chr2	68985367	68985567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	124026.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	31.09	19.87	30.8	22.52	19.23	22.26	22.26	41.61	29.9	28.12	22.11	20.68
Merged-chr18-13007763-3	chr18	13007662	13007862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	772.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	54.11	50.05	33.09	41.43	44.18	36.69	28.9	53.86	68.25	49.21	53.77	42.29
Merged-chr1-161482385-3	chr1	161482271	161482471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12286.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	21.0	16.85	35.94	34.19	47.87	58.64	34.55	65.78	47.21	51.21	58.29	29.76
Merged-chr3-89773947-1	chr3	89773847	89774047	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_130957)	promoter-TSS (NR_130957)	338.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	13.33	10.56	3.42	19.71	15.14	7.84	14.62	16.12	19.67	10.54	19.09	17.23
Merged-chr5-5419452-3	chr5	5419354	5419554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39203.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	69.86	51.06	61.61	77.62	88.78	87.17	78.72	118.26	120.37	91.38	96.48	79.57
Merged-chr4-129500910-3	chr4	129500800	129501000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9710.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	126.39	128.03	111.24	45.45	81.82	153.34	68.43	39.53	114.47	123.02	143.21	57.64
Merged-chr4-86580227-3	chr4	86580115	86580315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4542.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	60.17	63.39	81.58	68.37	77.32	96.89	43.51	84.56	73.95	82.35	77.38	57.95
Merged-chr3-51561287-3	chr3	51561257	51561457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-534.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	12.92	17.1	11.41	23.33	22.09	22.58	18.93	20.27	20.85	25.61	25.63	14.1
Merged-chr11-115743111-3	chr11	115743013	115743213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22320.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	32.3	22.89	17.68	21.72	18.41	30.1	19.93	25.49	25.37	26.11	47.23	27.25
Merged-chr13-34991696-3	chr13	34991607	34991807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110331, intron 2 of 9)	MER77B|LTR|ERVL	2437.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	21.8	33.45	43.93	16.49	21.27	35.75	9.63	24.5	47.4	32.13	41.2	23.49
Merged-chr4-135963631-3	chr4	135963525	135963725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-100.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	85.2	61.88	50.77	58.32	75.68	81.53	35.21	51.79	86.54	107.95	77.38	43.54
Merged-chr1-91456333-4	chr1	91456246	91456446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2982.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	38.36	29.68	69.6	35.8	58.5	42.65	59.79	56.61	64.32	46.7	87.43	43.86
Merged-chr16-33185055-3	chr16	33184947	33185147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176840)	promoter-TSS (NM_176840)	-24.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	80.36	52.82	67.88	50.68	87.96	80.27	46.17	67.07	65.3	94.4	96.98	60.46
Merged-chr11-85235048-3	chr11	85234926	85235126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	94.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	43.21	50.05	45.64	43.44	44.18	62.4	49.83	38.94	55.66	72.81	45.73	46.05
Merged-chr14-75186447-3	chr14	75186334	75186534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50009.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	35.13	43.77	45.64	29.36	56.46	64.6	25.58	24.76	47.01	77.83	47.74	18.48
Merged-chr1-86442608-3	chr1	86442498	86442698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	16269.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	42.4	37.98	27.38	15.69	27.0	53.62	23.92	17.75	58.61	64.27	45.73	25.37
Merged-chr3-94443348-3	chr3	94443249	94443449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030116)	promoter-TSS (NM_030116)	13.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	34.73	41.0	55.9	38.21	61.77	56.44	33.88	53.55	59.4	66.78	90.45	46.68
Merged-chr1-165134015-3	chr1	165133920	165134120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	26753.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	21.4	24.15	29.66	41.83	28.64	35.12	15.61	42.45	50.94	34.14	70.35	31.01
Merged-chr13-3539064-2	chr13	3538974	3539174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	999.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	8.48	10.31	20.54	13.27	6.95	11.6	19.27	29.16	13.37	20.59	21.61	14.1
Merged-chr10-91242759-3	chr10	91242649	91242849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22130.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	35.13	19.62	29.09	44.24	33.55	25.09	59.79	49.23	29.31	18.58	31.15	18.17
Merged-chr4-119912417-3	chr4	119912310	119912510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	97732.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	18.17	17.36	27.95	22.52	24.14	40.14	23.58	27.06	27.34	39.67	31.66	17.54
Merged-chr17-30004839-3	chr17	30004752	30004952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-187.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	72.28	95.08	117.51	85.67	81.41	123.86	88.03	79.71	74.35	97.91	86.93	76.12
Merged-chr14-19823924-3	chr14	19823842	19824042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-119.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	163.13	166.76	164.86	169.73	162.82	162.43	109.95	146.05	171.12	172.72	199.99	122.49
Merged-chr8-68793911-3	chr8	68793807	68794007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293792)	promoter-TSS (NM_001293792)	-22.0	NM_001359129	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	117.5	126.02	136.34	120.26	120.69	127.0	70.09	120.31	172.5	205.86	222.1	141.91
Merged-chr7-113513725-3	chr7	113513629	113513829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-105.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	198.67	150.41	177.41	219.2	219.28	229.54	193.32	254.08	220.88	253.56	308.02	138.78
Merged-chr15-80074974-3	chr15	80074904	80075104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3575.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	34.32	30.18	43.35	53.89	79.78	60.52	50.49	87.67	62.35	34.14	60.8	39.78
Merged-chr1-176826322-3	chr1	176826207	176826407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9826.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	41.99	27.67	54.76	15.28	50.73	83.72	41.85	48.31	65.69	75.32	75.87	34.77
Merged-chr16-25059171-3	chr16	25059066	25059266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	21.4	19.87	30.23	24.13	29.05	34.49	29.9	29.66	14.95	16.57	19.09	28.51
Merged-chr1-136685499-3	chr1	136685406	136685606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1877.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	87.62	65.9	133.49	149.62	118.23	131.7	123.57	130.46	133.75	124.02	151.25	113.72
Merged-chr2-71211742-3	chr2	71211665	71211865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198878)	promoter-TSS (NM_001198878)	59.0	NM_001198876	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	48.05	44.02	51.91	65.56	57.27	55.5	63.11	60.84	45.04	50.71	64.82	33.21
Merged-chr10-6715835-3	chr10	6715747	6715947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42746.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	14.94	15.34	43.35	21.72	38.05	20.38	10.96	44.47	35.8	25.11	31.15	20.99
Merged-chr10-94474386-3	chr10	94474280	94474480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-40477.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	88.43	64.89	75.87	116.24	108.82	111.32	108.62	145.51	96.57	102.93	141.7	91.47
Merged-chr3-131303191-3	chr3	131303095	131303295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027816)	promoter-TSS (NM_027816)	32.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	29.48	26.16	24.53	36.6	54.41	50.49	60.46	72.31	38.16	32.64	75.87	28.51
Merged-chr7-16052934-3	chr7	16052837	16053037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18908.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	104.18	101.37	78.72	71.59	96.14	94.7	57.13	81.76	138.47	116.99	147.23	66.73
Merged-chr5-92353786-3	chr5	92353737	92353937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-4948.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	62.99	52.57	52.48	32.98	36.82	67.73	37.54	28.09	83.4	67.28	89.44	32.58
Merged-chr10-118098156-3	chr10	118098047	118098247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43640.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	133.66	116.96	157.45	136.35	148.1	207.59	210.26	200.44	185.08	167.7	223.6	126.56
Merged-chr8-108971524-1	chr8	108971424	108971624	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	34664.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	5.03	5.7	8.04	3.68	15.99	22.59	15.98	8.85	8.03	19.09	3.45
Merged-chr11-85697685-3	chr11	85697597	85697797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	22047.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	44.42	31.94	67.88	53.89	72.0	58.32	42.85	88.85	59.79	55.23	61.3	53.57
Merged-chr10-121446035-3	chr10	121445925	121446125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	30225.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	23.82	26.16	31.95	15.28	30.27	48.6	21.26	18.95	25.37	27.11	23.62	14.1
Merged-chr9-121574599-3	chr9	121574488	121574688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12432.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	18.17	15.85	19.97	34.19	27.82	21.01	31.22	25.77	24.98	23.6	29.65	10.96
Merged-chr15-38289156-3	chr15	38289056	38289256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	10744.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	65.41	43.26	46.21	64.35	98.59	80.9	72.75	66.25	85.17	69.79	87.43	55.76
Merged-chr5-5115271-1	chr5	5115171	5115371	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 6 of 14)	intron (NM_011074, intron 6 of 14)	150797.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.41	0.0	0.0	0.0	21.05	23.1	23.62	17.54
Merged-chr3-88648303-3	chr3	88648193	88648393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198911)	TTS (NM_001198911)	4849.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	68.24	51.56	72.45	52.29	82.23	90.31	46.84	63.79	82.61	82.85	89.94	35.4
Merged-chr11-95414913-3	chr11	95414753	95414953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	770.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	54.51	65.4	38.22	39.82	40.09	56.76	43.85	22.15	42.68	72.3	66.33	46.99
Merged-chr5-99234634-3	chr5	99234524	99234724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145839, exon 5 of 14)	exon (NM_145839, exon 5 of 14)	18303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	58.95	56.59	72.45	39.82	43.77	68.05	32.88	65.58	59.99	75.32	79.89	31.95
Merged-chr6-42349853-3	chr6	42349764	42349964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	36.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	230.16	218.83	318.31	283.95	272.05	314.83	257.1	307.15	331.42	355.99	484.39	228.06
Merged-chr13-9409216-3	chr13	9409100	9409300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	132675.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	56.13	28.93	62.75	79.64	56.46	70.87	56.14	76.04	44.06	50.21	43.72	20.05
Merged-chr8-22641926-3	chr8	22641839	22642039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011130, intron 7 of 13)	intron (NM_011130, intron 7 of 13)	-5130.0	NR_027886	68074.0	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	26.65	30.18	49.06	52.29	40.09	42.33	41.52	58.35	42.48	39.16	45.22	33.83
Merged-chr16-31290449-3	chr16	31290358	31290558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-15181.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	32.71	33.2	46.78	45.85	59.73	50.49	29.23	42.06	69.23	61.76	66.83	46.99
Merged-chr10-78356168-3	chr10	78356069	78356269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4469.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	50.07	50.05	64.46	44.64	39.68	45.78	33.55	33.98	50.94	37.16	51.25	23.81
Merged-chr4-41368429-3	chr4	41368370	41368570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 2 of 6)	intron (NM_001355508, intron 2 of 6)	16507.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	15.34	18.11	13.69	22.93	21.27	21.01	25.58	30.73	30.88	26.61	25.63	17.86
Merged-chr9-66375029-3	chr9	66374950	66375150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 2 of 77)	intron (NM_145617, intron 2 of 77)	24600.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	20.19	14.09	18.25	16.49	17.18	28.22	15.94	25.35	39.34	43.68	30.65	17.23
Merged-chr3-133091824-3	chr3	133091716	133091916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	9.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	83.99	71.94	44.5	77.22	71.18	86.86	49.16	67.79	108.38	80.84	99.99	55.13
Merged-chr11-79611098-3	chr11	79610944	79611144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12119.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	28.27	26.16	43.93	40.62	38.05	40.76	38.53	53.92	44.65	37.16	39.7	27.88
Merged-chr6-97464358-3	chr6	97464231	97464431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-5045.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	75.91	75.96	55.33	48.26	71.59	119.47	46.17	48.9	71.79	83.85	101.0	50.44
Merged-chr1-39590391-3	chr1	39590291	39590491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13044.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	30.69	30.69	46.21	39.42	31.09	47.66	29.9	46.77	49.96	42.18	55.78	19.11
Merged-chr7-47035160-3	chr7	47035065	47035265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15475.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	65.01	51.06	71.88	84.86	67.5	70.24	65.11	86.47	72.58	58.75	95.97	56.7
Merged-chr1-171658685-3	chr1	171658586	171658786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5649.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	13.33	18.36	39.93	32.58	38.05	31.67	31.22	46.04	27.93	31.13	29.65	25.06
Merged-chr1-54914651-3	chr1	54914550	54914750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	11737.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	49.26	48.29	43.35	62.34	27.0	34.49	29.9	40.79	42.48	43.68	39.19	30.39
Merged-chrM-14739-2	chrM	14641	14841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											42635.57	42537.91	54168.85	56485.73	40959.44	49699.73	50263.11	66168.21	0.0	0.0	0.0	0.0
Merged-chr7-27486906-3	chr7	27486828	27487028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-25.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	164.75	185.88	150.6	152.43	193.1	219.19	145.49	140.47	237.6	218.92	259.78	118.1
Merged-chr1-131943008-3	chr1	131942876	131943076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19939.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	21.0	25.15	46.78	49.47	32.73	28.22	37.87	53.22	35.99	17.07	41.2	29.76
Merged-chr10-127662270-3	chr10	127662173	127662373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122895, intron 5 of 5)	intron (NM_001122895, intron 5 of 5)	4430.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	30.69	33.45	35.94	29.76	49.09	45.15	29.9	41.94	49.57	60.25	72.86	43.23
Merged-chr13-48545978-3	chr13	48545885	48546085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7713.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	154.65	151.92	213.92	189.03	154.64	208.21	104.3	154.8	200.03	198.83	272.85	146.61
Merged-chrX-48234679-3	chrX	48234564	48234764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22270.0	NM_028276	72554.0	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	28.67	26.91	39.93	32.98	46.23	47.35	42.52	51.14	45.04	33.64	54.27	28.82
Merged-chr15-64085983-3	chr15	64085885	64086085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276462)	TTS (NM_001276462)	-25537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	25.04	28.67	29.66	27.75	32.32	28.22	20.59	36.06	31.08	31.63	50.25	24.12
Merged-chr3-90051928-3	chr3	90051818	90052018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	282.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	14.94	18.11	27.95	14.48	25.36	33.55	10.3	27.28	31.27	41.67	45.22	31.33
Merged-chr18-9708148-1	chr18	9708048	9708248	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 1 of 9)	CpG	500.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	1.21	4.28	4.56	1.61	2.86	5.64	6.64	13.6	1.57	5.52	3.52	6.89
Merged-chr13-47233304-3	chr13	47233217	47233417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	39314.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	23.02	22.39	24.53	35.39	40.91	23.83	34.21	47.41	35.99	28.62	31.66	22.24
Merged-chr5-30638328-3	chr5	30638252	30638452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-9584.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	56.13	55.59	85.0	56.71	61.77	89.68	58.46	85.63	70.22	76.32	92.96	57.33
Merged-chr1-172525306-3	chr1	172525204	172525404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	4174.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	14.54	18.61	35.94	25.74	32.73	16.31	32.55	27.03	27.14	19.58	40.2	18.48
Merged-chr5-104571624-3	chr5	104571504	104571704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346671)	promoter-TSS (NM_001346671)	-68.0	NM_001346672	69623.0	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	17.36	18.36	15.4	12.87	20.05	18.19	12.62	17.33	77.5	83.35	115.07	53.88
Merged-chr4-32239453-3	chr4	32239328	32239528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-178007.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	23.42	21.63	23.96	31.37	33.14	31.67	50.16	51.79	29.31	28.12	45.73	35.4
Merged-chr3-146108184-3	chr3	146108100	146108300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-164.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	50.07	37.98	25.67	49.07	48.68	58.64	34.21	54.93	137.09	94.4	133.66	68.29
Merged-chr5-33358688-3	chr5	33358590	33358790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021500, intron 2 of 8)	intron (NM_021500, intron 2 of 8)	-20006.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	49.26	36.22	48.49	39.01	54.41	52.05	54.48	58.29	52.12	42.18	57.28	31.95
Merged-chr11-60935488-3	chr11	60935378	60935578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	3421.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	59.76	49.55	55.9	44.24	65.46	79.96	36.87	51.84	88.12	102.93	87.43	48.87
Merged-chr2-167656865-3	chr2	167656800	167657000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	4644.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	60.17	68.16	85.0	89.29	81.0	110.69	115.93	109.26	109.56	110.46	114.06	90.53
Merged-chr3-54709172-3	chr3	54709065	54709265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019995, exon 11 of 20)	exon (NM_019995, exon 11 of 20)	14042.0	NM_001358015	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	37.15	36.72	57.05	60.73	51.96	60.21	51.15	98.38	71.59	61.26	91.95	41.98
Merged-chr11-101173984-3	chr11	101173898	101174098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007721, exon 2 of 2)	exon (NM_007721, exon 2 of 2)	1445.0	NM_007721	12777.0	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	14.54	17.86	21.68	16.49	24.96	33.55	18.27	22.74	21.05	36.15	43.72	27.88
Merged-chr1-191085739-3	chr1	191085614	191085814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12700.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	32.3	43.01	55.33	34.99	44.18	57.38	53.81	39.36	62.35	56.24	64.82	38.22
Merged-chr11-23762848-3	chr11	23762772	23762972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	8098.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	42.8	32.2	61.61	66.77	41.32	59.58	46.84	62.1	51.53	41.17	62.31	27.25
Merged-chr10-86772508-3	chr10	86772417	86772617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003910, intron 14 of 15)	intron (NM_001003910, intron 14 of 15)	-6488.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	88.43	78.23	103.82	74.41	94.5	91.25	60.46	115.07	124.9	112.47	140.19	62.65
Merged-chrX-77509344-3	chrX	77509245	77509445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1882.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	50.88	39.99	38.22	41.43	50.32	60.83	53.15	39.9	66.48	87.87	69.85	41.04
Merged-chr2-92483761-3	chr2	92483662	92483862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-23244.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	33.92	37.23	43.93	36.6	65.46	78.71	63.78	60.73	57.04	85.86	83.91	46.99
Merged-chr11-75573343-3	chr11	75573241	75573441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-14738.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	43.21	43.01	47.35	57.92	77.32	74.63	68.76	74.24	58.22	61.76	109.54	63.59
Merged-chr5-76048317-3	chr5	76048207	76048407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69879.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	29.88	31.94	70.74	52.29	45.0	41.39	24.91	55.77	49.76	51.21	61.81	35.09
Merged-chr2-27475711-3	chr2	27475623	27475823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-50.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	78.74	69.17	42.78	53.49	84.68	90.94	48.5	76.57	87.72	76.32	143.71	57.33
Merged-chr2-43738673-3	chr2	43738575	43738775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10149.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	59.76	52.57	61.04	91.7	47.87	56.44	62.12	84.81	71.0	60.25	66.33	57.64
Merged-chr13-98896900-3	chr13	98896803	98897003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	-5861.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	7.27	14.09	36.51	20.91	19.64	20.07	13.62	26.44	35.01	27.62	31.15	21.62
Merged-chr19-46648121-3	chr19	46648035	46648235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24734.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	27.46	19.37	4.56	18.5	31.09	27.28	29.56	32.86	20.06	25.61	18.59	17.54
Merged-chr10-60257614-3	chr10	60257490	60257690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-20038.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	57.74	42.01	58.76	57.11	54.82	72.12	71.08	91.49	117.03	79.33	120.6	79.26
Merged-chr17-44777137-3	chr17	44777039	44777239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357320)	promoter-TSS (NM_001357320)	-27.0	NM_001357320	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	92.47	148.4	120.94	120.26	156.28	144.87	111.28	145.63	204.95	224.94	227.62	131.57
Merged-chr15-86273516-3	chr15	86273416	86273616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-4159.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	61.78	58.35	48.49	60.33	54.0	48.6	40.86	45.17	42.48	40.17	74.87	26.94
Merged-chr7-139402943-3	chr7	139402848	139403048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	L1MB5|LINE|L1	2454.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	49.67	55.84	42.78	51.08	47.46	70.55	34.88	26.92	44.65	43.18	63.82	24.12
Merged-chr10-79996452-3	chr10	79996353	79996553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1155.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	42.8	55.08	41.64	44.24	51.55	65.85	45.18	57.22	79.07	63.77	87.43	39.16
Merged-chr17-23803503-2	chr17	23803390	23803590	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175229, intron 1 of 13)	CpG	303.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	39.98	42.51	41.07	27.35	27.41	62.09	25.58	27.08	80.64	92.89	86.43	51.06
Merged-chr8-27261252-3	chr8	27261145	27261345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	918.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	175.25	168.52	189.39	202.71	204.55	257.13	169.07	229.46	194.52	207.87	279.38	121.86
Merged-chr7-132323612-3	chr7	132323500	132323700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6372.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	35.53	33.7	40.5	49.87	33.55	47.04	26.24	35.27	62.55	31.13	53.26	26.0
Merged-chr4-109199613-3	chr4	109199510	109199710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	2662.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	13.73	14.34	30.8	30.16	16.77	23.52	19.6	34.65	20.65	27.62	29.14	17.54
Merged-chr2-145824963-3	chr2	145824872	145825072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	38856.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	30.28	37.48	56.48	55.1	46.23	56.44	36.54	56.89	64.71	65.27	91.45	46.68
Merged-chr15-84995713-2	chr15	84995584	84995784	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7713.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	10.09	11.32	7.99	7.24	21.68	11.6	9.3	14.66	23.01	17.07	24.12	12.84
Merged-chr8-33599562-3	chr8	33599446	33599646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017374)	promoter-TSS (NM_017374)	-75.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	71.07	65.9	50.77	63.55	76.91	72.44	67.76	86.38	80.05	70.29	83.91	59.52
Merged-chr2-174018179-3	chr2	174018079	174018279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58872.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	70.26	45.02	78.72	82.85	66.68	65.54	63.44	86.86	72.18	78.33	101.5	52.32
Merged-chr1-130462582-3	chr1	130462444	130462644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010016, intron 1 of 9)	intron (NM_010016, intron 1 of 9)	200.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	25.04	24.65	22.82	24.13	24.55	28.54	30.56	37.93	37.37	45.19	64.82	29.76
Merged-chr3-121330379-3	chr3	121330272	121330472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38632.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	17.36	24.15	21.11	27.75	16.36	13.8	17.94	25.29	34.22	15.57	27.64	18.48
Merged-chr11-121745716-3	chr11	121745592	121745792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43265.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	17.36	20.12	16.54	16.49	23.73	33.55	19.27	23.86	37.57	37.16	45.22	23.49
Merged-chr11-46461593-3	chr11	46461475	46461675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134250, intron 3 of 6)	ID_B1|SINE|B4	6644.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	21.8	26.91	25.67	23.33	54.41	50.17	42.52	52.93	38.94	37.66	60.3	23.81
Merged-chr9-121314997-3	chr9	121314897	121315097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	17495.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	60.17	46.28	37.65	48.26	62.18	98.46	60.12	57.48	82.02	77.83	92.96	48.56
Merged-chr7-114562810-6	chr7	114562710	114562910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177382, exon 1 of 5)	exon (NM_177382, exon 1 of 5)	162.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	48.46	45.53	54.76	54.7	39.68	33.24	81.05	38.41	55.27	77.83	91.45	47.93
Merged-chr17-53479195-3	chr17	53479108	53479308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-26.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	254.39	264.36	265.26	317.34	260.19	287.55	248.46	283.07	349.91	311.31	365.3	189.84
Merged-chr16-96081529-3	chr16	96081426	96081626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145125, intron 4 of 41)	intron (NM_145125, intron 4 of 41)	902.0	NM_001103179	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	65.82	54.58	53.05	41.43	73.23	101.91	43.85	58.43	110.93	66.28	93.96	65.79
Merged-chr2-94178936-3	chr2	94178835	94179035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21026.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	22.61	32.7	21.11	26.14	18.0	27.28	19.6	28.46	42.88	22.59	78.89	18.48
Merged-chr4-141546619-3	chr4	141546531	141546731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	469.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	16.96	38.74	26.24	27.35	27.0	35.43	29.56	19.79	49.76	39.16	43.21	22.24
Merged-chr5-34538087-3	chr5	34537978	34538178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-5287.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	30.69	35.21	19.4	31.37	36.41	26.97	21.92	26.05	16.13	18.08	31.66	13.47
Merged-chr13-81400872-2	chr13	81400770	81400970	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 77 of 89)	intron (NM_054053, intron 77 of 89)	232274.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	5.25	7.55	14.83	5.63	1.64	3.76	8.64	11.78	13.57	6.03	19.09	6.27
Merged-chr19-41332419-3	chr19	41332329	41332529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	52641.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	54.11	30.94	63.89	44.64	68.73	51.43	42.52	51.79	71.4	69.29	76.38	44.48
Merged-chr15-86202855-3	chr15	86202737	86202937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11622.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	77.53	59.86	96.98	49.87	101.87	87.49	109.62	135.2	65.3	73.81	75.87	51.38
Merged-chr3-19630299-3	chr3	19630233	19630433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14127.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	64.61	55.59	90.13	86.47	83.87	81.53	103.97	115.26	115.06	68.79	110.04	69.55
Merged-chr3-87334172-3	chr3	87334041	87334241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23740.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	63.4	62.38	75.87	77.22	74.46	107.56	139.18	48.7	96.18	95.4	164.31	106.82
Merged-chr6-38712356-3	chr6	38712256	38712456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	MIRc|SINE|MIR	49287.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	44.82	48.29	64.46	57.92	31.5	67.1	27.24	51.73	71.2	74.81	95.47	60.15
Merged-chr7-130519616-3	chr7	130519497	130519697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136054)	promoter-TSS (NM_001136054)	-17.0	NM_013799	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	103.78	97.09	102.11	108.19	109.23	137.34	111.61	103.4	146.14	128.04	146.22	98.37
Merged-chr11-3170706-2	chr11	3170614	3170814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	22749.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	35.94	32.45	31.38	37.4	45.0	56.13	36.21	35.75	0.0	0.5	0.0	0.0
Merged-chr9-111063040-3	chr9	111062944	111063144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5526.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	89.24	98.85	83.29	88.08	102.28	138.29	94.67	96.67	75.33	58.75	58.79	29.13
Merged-chr5-140108083-3	chr5	140107974	140108174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	66844.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	82.37	57.85	108.96	93.71	74.05	80.9	53.48	89.66	88.51	49.21	84.92	58.27
Merged-chr11-94994102-1	chr11	94994002	94994202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2890.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	23.42	25.15	23.39	31.77	0.82	0.94	3.32	2.02	1.97	3.01	2.51	4.39
Merged-chr17-24220816-3	chr17	24220722	24220922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	29.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	105.39	85.52	88.42	102.96	117.41	109.44	53.81	95.5	95.59	80.84	142.71	58.89
Merged-chr10-128298422-3	chr10	128298314	128298514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-330.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	78.74	68.42	94.13	88.89	100.64	97.21	73.41	82.93	114.08	116.99	115.07	83.33
Merged-chr9-116183190-3	chr9	116183095	116183295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5985.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	29.07	20.88	18.83	16.09	29.05	44.84	13.95	25.91	38.75	25.11	20.6	17.54
Merged-chr19-47228869-3	chr19	47228797	47228997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163480)	promoter-TSS (NM_001163480)	54.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	28.67	20.37	37.65	20.91	42.55	28.85	33.22	30.9	33.83	29.62	58.79	14.1
Merged-chr12-110446475-3	chr12	110446329	110446529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-750.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	124.77	76.46	87.85	85.27	124.78	112.89	80.72	112.63	104.83	109.96	148.73	65.79
Merged-chr15-13212155-1	chr15	13212055	13212255	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38480.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.63	3.02	2.28	10.46	7.36	5.33	9.3	11.38	6.88	6.03	9.04	7.21
Merged-chr4-122892358-3	chr4	122892230	122892430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6254.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	38.76	35.72	49.06	59.53	53.59	44.21	36.54	33.81	50.94	42.68	63.31	24.75
Merged-chr13-95679365-2	chr13	95679271	95679471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-17549.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	12.52	24.15	46.78	30.57	19.64	28.54	15.61	19.85	2.95	3.01	9.04	3.45
Merged-chr12-3426786-3	chr12	3426688	3426888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	-41.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	147.79	186.13	213.35	186.22	171.41	202.57	149.14	168.37	208.29	186.78	301.99	127.19
Merged-chr5-53385699-3	chr5	53385627	53385827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118621.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	31.09	19.62	17.68	23.73	26.59	39.2	16.28	36.31	50.35	63.27	42.21	21.62
Merged-chr15-79348293-3	chr15	79348190	79348390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304832)	promoter-TSS (NM_001304832)	-112.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	151.42	113.69	92.41	84.46	135.41	220.13	95.33	81.48	185.08	194.82	179.89	77.06
Merged-chr19-59345310-3	chr19	59345229	59345429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033222, exon 1 of 5)	exon (NM_001033222, exon 1 of 5)	451.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	20.19	23.9	20.54	30.57	14.32	21.32	30.89	19.99	22.23	20.08	24.12	17.54
Merged-chr11-34034095-3	chr11	34033991	34034191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	-12837.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	56.94	49.55	84.43	57.51	91.64	82.47	92.34	66.14	68.25	52.72	99.99	47.93
Merged-chr13-9093761-3	chr13	9093668	9093868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-113.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	290.33	274.42	338.28	232.47	378.01	405.14	256.44	327.25	428.58	404.7	524.59	241.53
Merged-chr5-99250989-3	chr5	99250892	99251092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1935.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	46.84	47.29	43.35	47.06	37.64	53.62	48.83	47.61	52.12	52.72	63.31	28.19
Merged-chr18-75494984-3	chr18	75494876	75495076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-19669.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	46.84	36.97	24.53	22.52	37.64	35.43	29.56	32.36	31.08	44.19	33.67	24.43
Merged-chr10-69213143-3	chr10	69213045	69213245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	-47.0	NM_001331193	320700.0	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	90.85	75.46	82.72	60.73	100.23	92.82	64.11	89.27	88.71	89.88	131.15	60.46
Merged-chr1-138244118-3	chr1	138244020	138244220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29618.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	104.18	105.39	103.25	103.77	97.78	109.75	78.06	67.99	110.15	106.95	126.12	58.58
Merged-chr12-65036410-3	chr12	65036348	65036548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177806, exon 1 of 14)	5' UTR (NM_177806, exon 1 of 14)	114.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	51.28	64.89	65.6	57.51	54.82	81.22	101.64	63.87	74.15	83.35	79.89	73.93
Merged-chr4-43964705-3	chr4	43964613	43964813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7011.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	75.91	94.57	61.04	88.89	66.68	84.35	77.73	57.59	105.23	93.39	90.45	58.27
Merged-chr11-118146564-3	chr11	118146468	118146668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-17349.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	39.17	13.58	19.4	10.05	67.09	68.67	33.22	63.14	58.02	71.8	40.7	28.82
Merged-chr15-100552033-3	chr15	100551910	100552110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033476)	promoter-TSS (NM_033476)	-2.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	168.38	160.22	149.46	139.97	183.28	202.88	125.56	138.37	214.0	233.48	186.92	125.93
Merged-chr2-45197545-3	chr2	45197426	45197626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80084.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	91.66	105.39	61.61	53.09	97.78	113.2	67.76	58.74	123.52	104.94	96.48	44.48
Merged-chr14-118663169-3	chr14	118663061	118663261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	13770.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	35.94	37.73	79.29	42.63	31.09	39.51	44.84	65.16	40.32	31.13	54.77	17.54
Merged-chr11-60878891-3	chr11	60878799	60878999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168507, exon 1 of 3)	5' UTR (NM_001168507, exon 1 of 3)	139.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	109.83	79.48	125.5	93.31	108.41	116.34	83.37	101.64	119.39	115.99	141.2	68.61
Merged-chr10-99261819-5	chr10	99261676	99261876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1455.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	44.82	29.43	38.22	39.01	39.27	44.84	25.58	27.95	36.98	43.18	40.2	21.93
Merged-chr10-77662932-3	chr10	77662822	77663022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	21698.0	NR_035451	100316811.0		NR_035451	ENSMUSG00000089424	Mir1930	mir-1930|mmu-mir-1930	microRNA 1930	ncRNA	27.86	14.34	42.78	32.98	26.18	37.32	30.89	29.16	40.71	43.18	51.76	27.57
Merged-chr11-68901487-3	chr11	68901365	68901565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-101.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	66.63	66.91	39.93	37.0	62.18	65.85	33.55	37.96	86.35	87.87	43.21	53.26
Merged-chr1-134093165-3	chr1	134093086	134093286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-14031.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	223.7	272.4	275.53	297.63	232.37	323.61	246.8	231.06	330.44	338.92	448.72	213.65
Merged-chr17-88552191-3	chr17	88552127	88552327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	22103.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	27.46	13.58	19.97	30.57	22.91	26.03	38.86	37.43	30.49	39.16	46.23	21.93
Merged-chr13-24104189-3	chr13	24104091	24104291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112977.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	59.76	79.23	82.15	68.37	90.41	112.57	85.37	77.19	101.49	95.4	115.07	48.56
Merged-chr11-101552747-3	chr11	101552645	101552845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	91.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	159.5	203.49	183.12	156.05	167.32	206.64	120.25	143.13	221.47	200.84	195.47	134.39
Merged-chr3-84748307-1	chr3	84748207	84748407	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67270.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.23	1.01	3.99	2.41	18.0	18.19	18.27	38.07	1.18	0.5	5.53	0.94
Merged-chr1-37013187-3	chr1	37013056	37013256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73629.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	61.38	66.4	45.07	45.05	38.05	74.0	38.2	37.35	72.38	66.78	63.82	19.11
Merged-chr4-132329513-3	chr4	132329422	132329622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027925)	promoter-TSS (NM_027925)	16.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	51.28	68.16	50.77	56.71	74.05	64.28	46.17	55.07	94.61	101.93	112.56	54.2
Merged-chr10-81601040-3	chr10	81600956	81601156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-156.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	77.53	57.85	62.18	67.97	77.73	80.27	59.13	86.02	105.42	114.48	140.19	74.87
Merged-chr5-115011048-3	chr5	115010955	115011155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029012)	promoter-TSS (NM_029012)	-469.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	85.6	65.9	79.86	68.78	86.73	77.14	43.85	88.23	127.85	111.47	108.03	70.17
Merged-chr2-174330820-3	chr2	174330677	174330877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201616, intron 1 of 11)	CpG-8943	688.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	24.63	24.9	18.83	30.16	28.23	46.41	23.58	23.75	49.57	36.65	66.83	47.3
Merged-chr5-123058027-3	chr5	123057924	123058124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11008.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	123.16	101.37	90.13	84.86	112.5	155.53	74.07	63.56	136.11	169.21	109.54	84.58
Merged-chr19-11766616-3	chr19	11766508	11766708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3807.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	39.98	34.71	51.91	29.76	44.18	39.82	37.54	43.71	41.89	25.11	43.21	40.41
Merged-chr5-96912974-3	chr5	96912872	96913072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8300.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	41.99	52.32	38.22	42.23	54.41	68.36	37.54	61.63	33.04	32.64	39.7	20.05
Merged-chr3-89843335-3	chr3	89843239	89843439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	11969.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	45.63	39.99	79.86	70.38	59.73	61.77	56.14	78.2	53.5	51.21	73.86	63.91
Merged-chr17-27827157-3	chr17	27827049	27827249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6607.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	38.36	47.79	47.92	23.33	51.14	67.1	17.94	21.59	56.25	83.35	36.18	27.88
Merged-chr2-167713303-4	chr2	167713202	167713402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22125.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	17.77	12.07	8.56	19.71	25.36	19.76	26.57	21.81	43.27	52.22	45.73	26.31
Merged-chr9-106308762-3	chr9	106308646	106308846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27685.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	20.59	21.13	20.54	32.18	36.0	19.13	20.26	23.89	45.43	54.73	52.76	31.64
Merged-chr9-121352413-3	chr9	121352316	121352516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-14542.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	30.69	34.96	27.95	35.8	22.09	31.36	35.54	25.07	36.39	26.61	32.16	29.76
Merged-chr4-47303538-3	chr4	47303439	47303639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-49683.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	55.32	56.59	50.77	64.75	45.0	64.28	65.11	37.54	62.74	79.83	54.27	47.62
Merged-chr1-64338760-3	chr1	64338662	64338862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-194042.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	17.36	15.34	22.25	26.55	42.55	52.05	36.21	47.07	23.21	36.15	29.14	30.07
Merged-chr14-62842704-3	chr14	62842608	62842808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	4987.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	77.12	77.72	71.31	71.19	53.59	71.49	42.85	53.07	67.86	57.74	72.36	26.0
Merged-chr13-113908485-1	chr13	113908385	113908585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	113977.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	25.44	29.68	31.38	32.98	0.0	0.0	0.66	1.15	1.18	1.0	0.0	0.63
Merged-chr10-20835407-3	chr10	20835309	20835509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-110331.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	131.23	129.03	150.03	138.76	132.55	139.23	73.08	146.13	171.32	132.05	167.83	107.76
Merged-chr12-85219390-3	chr12	85219284	85219484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145445)	promoter-TSS (NM_145445)	-97.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	178.48	188.65	170.0	161.68	203.32	243.33	139.84	191.16	221.08	231.47	284.91	102.75
Merged-chr3-84039450-3	chr3	84039349	84039549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 1 of 34)	CpG	712.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	21.8	15.09	41.64	17.7	29.86	33.24	25.58	23.36	39.73	22.09	38.69	24.75
Merged-chr6-83506963-3	chr6	83506847	83507047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162521)	promoter-TSS (NM_001162521)	22.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	222.09	205.5	231.03	198.69	201.69	248.04	127.55	187.88	231.7	254.07	263.8	127.5
Merged-chr8-46792860-3	chr8	46792751	46792951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	53106.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	20.59	26.66	30.8	25.34	36.41	33.24	16.61	30.67	35.01	43.18	54.27	22.24
Merged-chr1-151620833-3	chr1	151620724	151620924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	49451.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	69.86	63.64	110.1	71.99	82.64	90.62	59.46	81.28	79.86	88.87	86.43	42.6
Merged-chr7-73533617-3	chr7	73533510	73533710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8136.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	25.04	21.88	23.96	14.88	25.77	24.15	14.62	31.43	30.29	23.1	24.12	12.84
Merged-chr17-88131475-3	chr17	88131372	88131572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190356)	TTS (NM_001190356)	5960.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	35.53	22.64	33.09	23.73	39.68	57.7	34.21	54.56	61.17	61.76	50.25	20.05
Merged-chr5-8056509-3	chr5	8056414	8056614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-28.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	30.28	35.21	24.53	54.7	60.14	62.09	73.41	59.02	37.37	48.7	86.43	38.85
Merged-chr13-56353436-3	chr13	56353338	56353538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9462.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	122.75	115.7	182.55	212.36	157.5	171.21	147.48	174.22	116.83	111.47	136.68	76.75
Merged-chr4-6373121-3	chr4	6373036	6373236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	7456.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	36.34	23.14	31.38	44.24	42.14	42.02	53.81	77.72	62.35	29.12	79.89	29.76
Merged-chr18-38339027-3	chr18	38338940	38339140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-47.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	76.72	70.43	62.75	50.27	78.14	95.64	37.2	71.75	74.35	85.86	92.96	52.94
Merged-chr7-5015510-5	chr7	5015389	5015589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-19.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	27.46	29.68	19.4	28.15	29.86	26.97	21.92	30.14	41.89	34.14	57.79	39.78
Merged-chr7-27195810-3	chr7	27195707	27195907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243888)	promoter-TSS (NM_001243888)	26.0	NM_001243888	414069.0	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	41.19	56.85	53.62	52.29	53.59	75.88	35.21	49.4	77.69	75.82	90.45	39.47
Merged-chr2-28540123-3	chr2	28540014	28540214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	6650.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	208.36	195.69	200.8	158.87	184.51	245.84	176.38	167.47	215.37	189.8	183.91	122.49
Merged-chr7-126482669-3	chr7	126482594	126482794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4661.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	101.76	64.89	92.98	54.3	106.37	92.5	87.03	102.17	87.13	85.36	87.43	54.2
Merged-chr10-20919809-3	chr10	20919709	20919909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-32738.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	23.42	14.84	31.38	33.38	29.86	28.54	36.21	45.56	33.04	18.58	47.23	30.07
Merged-chr7-19421452-3	chr7	19421350	19421550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-33.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	48.46	50.81	43.35	36.6	50.32	68.99	31.89	57.14	61.76	61.26	84.42	30.07
Merged-chr2-32966896-3	chr2	32966784	32966984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	3583.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	73.89	41.5	55.9	46.25	62.18	74.63	44.84	63.45	82.22	81.34	86.43	45.74
Merged-chr4-52439064-3	chr4	52438968	52439168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	-104.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	75.91	83.76	61.61	87.28	81.82	92.5	95.0	84.87	74.94	85.86	75.87	52.32
Merged-chr7-101362904-3	chr7	101362814	101363014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14845.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	149.0	135.07	150.03	108.59	175.51	223.58	155.79	164.72	194.92	170.21	190.94	102.12
Merged-chr7-127512427-3	chr7	127512308	127512508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	425.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	33.52	35.21	22.82	22.12	45.41	51.43	18.27	31.04	68.64	66.28	87.43	53.57
Merged-chr3-16180659-3	chr3	16180580	16180780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	-2485.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	31.5	32.45	41.64	44.24	47.87	52.05	31.22	48.73	51.53	44.19	72.36	29.13
Merged-chr7-26243277-3	chr7	26243168	26243368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-23563.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	15.34	26.41	21.11	23.33	29.46	28.22	26.57	14.64	21.64	23.1	22.61	15.04
Merged-chr19-42518771-3	chr19	42518676	42518876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-29.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	61.78	68.16	66.74	57.51	84.68	94.07	43.51	71.27	77.69	71.8	118.59	54.82
Merged-chr8-114133875-1	chr8	114133775	114133975	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290181, exon 1 of 4)	5' UTR (NM_001290181, exon 1 of 4)	301.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	3.63	3.02	3.99	2.41	3.68	12.54	9.97	8.58	2.36	5.02	7.54	5.33
Merged-chr6-82766713-3	chr6	82766614	82766814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	7740.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	23.82	20.37	25.67	20.11	40.09	38.26	32.22	30.84	43.47	40.67	53.77	17.86
Merged-chr8-25070192-3	chr8	25070092	25070292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-31230.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	21.8	20.88	24.53	29.36	23.73	24.46	22.26	28.74	26.75	21.59	30.15	20.05
Merged-chr7-35156656-3	chr7	35156582	35156782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29703.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	18.57	15.59	13.69	17.29	28.64	34.49	21.26	42.36	32.85	24.1	51.76	14.72
Merged-chr4-122840360-1	chr4	122840260	122840460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008917, intron 1 of 8)	L1MB5|LINE|L1	4133.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.81	2.01	1.14	0.8	5.32	4.08	9.63	11.21	1.18	3.51	1.51	0.63
Merged-chr18-31609834-4	chr18	31609654	31609854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	176.0	NM_026165	67453.0	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	35.94	41.25	22.25	39.42	38.86	31.04	54.81	29.41	27.54	61.26	43.21	36.65
Merged-chr19-43667265-3	chr19	43667170	43667370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	7611.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	58.15	47.54	70.74	63.15	73.23	65.22	40.52	65.69	62.15	76.32	76.38	36.03
Merged-chr2-51376831-3	chr2	51376739	51376939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61061.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	25.44	23.64	22.25	38.61	65.46	77.45	53.48	75.9	42.48	32.64	48.74	23.81
Merged-chrUn_GL456389-10666-1	chrUn_GL456389	10566	10766	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	451.6	625.62	659.26	532.24
Merged-chr12-4234119-3	chr12	4234000	4234200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204912)	promoter-TSS (NM_001204912)	73.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	71.47	70.43	62.18	82.05	73.23	90.0	65.44	65.55	68.25	90.88	87.93	52.0
Merged-chr13-52624290-3	chr13	52624194	52624394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	27412.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	26.25	28.93	23.39	24.94	25.36	53.62	31.56	42.2	41.7	20.59	48.74	19.42
Merged-chr15-99030758-3	chr15	99030644	99030844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	853.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	35.53	32.7	14.83	21.32	36.82	72.12	32.55	36.5	52.32	49.21	60.8	40.41
Merged-chr13-3541679-3	chr13	3541585	3541785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	3610.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	41.99	30.43	52.48	58.32	69.14	58.64	63.44	63.84	42.48	51.72	69.34	39.47
Merged-chr12-102445628-3	chr12	102445531	102445731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5818.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	142.54	112.68	158.59	116.24	159.96	179.36	116.59	142.91	148.89	152.64	179.89	106.51
Merged-chr10-79704412-3	chr10	79704339	79704539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	81.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	171.21	155.95	162.58	164.1	183.69	229.54	121.91	187.35	262.38	244.02	370.83	149.74
Merged-chrX-152342598-3	chrX	152342491	152342691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358369)	promoter-TSS (NM_001358369)	-107.0	NM_001358369	52808.0	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	137.69	147.14	173.42	137.55	137.46	178.42	149.48	194.64	180.36	176.24	241.69	108.08
Merged-chr17-15761433-3	chr17	15761355	15761555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 30 of 35)	intron (NM_007690, intron 30 of 35)	56488.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	35.13	37.48	55.33	51.48	43.36	55.82	35.87	53.3	70.61	73.81	75.87	39.47
Merged-chr7-43747980-3	chr7	43747854	43748054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077063, intron 2 of 2)	intron (NR_077063, intron 2 of 2)	7982.0	NR_077063	100504720.0	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	44.01	24.4	45.07	47.06	49.91	29.79	35.21	46.4	50.35	36.65	51.25	30.7
Merged-chr11-60830675-3	chr11	60830560	60830760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	29.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	76.32	50.05	83.86	59.12	65.87	82.47	42.19	48.79	89.69	97.91	77.38	45.74
Merged-chr15-64242686-3	chr15	64242586	64242786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	69987.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	117.5	128.03	110.1	118.65	116.59	135.78	114.6	149.3	153.02	179.75	188.43	90.22
Merged-chr10-96333460-3	chr10	96333381	96333581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	107274.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	84.39	65.9	70.74	62.74	76.5	88.11	60.79	80.02	98.54	88.37	130.65	44.8
Merged-chr9-14074442-3	chr9	14074345	14074545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-201856.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	43.61	41.0	54.76	55.1	22.91	44.21	41.19	52.54	53.5	30.63	65.83	33.21
Merged-chr17-21532294-3	chr17	21532201	21532401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3238.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	24.23	32.7	28.52	49.47	46.64	42.33	40.86	55.68	38.55	35.65	74.37	33.52
Merged-chr8-83741279-3	chr8	83741176	83741376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163031)	promoter-TSS (NM_001163031)	35.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	163.13	153.18	163.72	175.36	247.92	261.83	169.74	162.2	190.59	220.42	310.03	130.63
Merged-chr14-77897325-1	chr14	77897225	77897425	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-6914.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.81	7.04	14.26	4.83	2.86	8.15	7.97	3.28	19.67	13.05	19.09	12.53
Merged-chr15-59809487-3	chr15	59809371	59809571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	47.65	57.35	70.17	59.12	52.37	80.59	69.42	58.96	87.53	61.26	77.88	46.68
Merged-chr3-148918609-3	chr3	148918502	148918702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	URR1B|DNA|hAT-Charlie	36033.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	112.26	91.05	168.28	148.81	164.05	194.73	226.87	259.18	142.8	124.02	181.4	95.55
Merged-chr17-34304914-3	chr17	34304825	34305025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-942.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	60.57	77.47	92.98	62.34	81.41	114.77	57.8	43.71	160.5	151.64	155.27	83.96
Merged-chr7-121120314-3	chr7	121120214	121120414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139310, intron 12 of 28)	intron (NM_139310, intron 12 of 28)	36876.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	65.01	82.5	75.87	82.85	84.68	100.66	76.73	107.61	148.5	80.84	150.24	72.36
Merged-chr7-127745941-3	chr7	127745836	127746036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172748)	promoter-TSS (NM_172748)	-839.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	95.3	99.1	98.69	123.07	112.5	104.42	63.78	87.93	141.03	138.08	166.32	100.25
Merged-chr19-38396012-3	chr19	38395904	38396104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	24.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	20.19	17.86	21.68	20.91	33.14	38.26	12.95	31.21	35.99	20.08	33.67	18.8
Merged-chr6-88518928-3	chr6	88518827	88519027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	-127.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	176.05	176.07	209.93	203.51	236.46	268.42	162.43	181.29	234.45	264.11	262.3	135.96
Merged-chr1-156996658-3	chr1	156996556	156996756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57030.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	37.55	44.02	71.88	55.91	40.91	38.57	31.89	42.81	46.42	47.2	66.33	27.88
Merged-chr9-56937406-3	chr9	56937286	56937486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133976)	promoter-TSS (NM_133976)	-114.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	80.36	38.48	74.16	56.71	56.87	68.99	39.86	52.99	76.31	92.39	64.82	45.42
Merged-chr2-148681538-2	chr2	148681459	148681659	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	439.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	17.77	24.4	36.51	24.53	26.18	26.65	29.56	22.07	29.11	45.69	55.27	18.48
Merged-chr13-81783768-3	chr13	81783676	81783876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007684, intron 1 of 4)	CpG	529.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	188.17	156.45	170.57	154.44	196.37	213.54	179.37	219.76	283.23	245.03	357.77	168.85
Merged-chr17-86167005-2	chr17	86166896	86167096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-789.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	13.73	14.59	17.11	16.09	16.36	19.76	14.62	21.93	21.24	13.05	17.59	12.84
Merged-chr4-95050747-3	chr4	95050668	95050868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010591, exon 1 of 1)	exon (NM_010591, exon 1 of 1)	1454.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	63.4	58.86	30.8	63.15	54.41	54.56	51.82	50.55	71.4	71.8	106.02	57.95
Merged-chr8-70353354-3	chr8	70353243	70353443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-64.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	94.08	84.26	71.31	83.66	87.55	114.14	36.21	67.63	122.93	126.53	112.05	75.81
Merged-chr17-56716996-3	chr17	56716913	56717113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-92.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	106.6	88.54	93.55	90.9	95.32	112.57	53.15	74.47	167.18	145.11	124.62	99.31
Merged-chr2-51982421-2	chr2	51982328	51982528	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9220.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.81	0.0	1.71	0.0	27.0	26.97	17.27	32.38	26.95	20.59	39.19	17.54
Merged-chr6-108537131-3	chr6	108537033	108537233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	47390.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	73.49	65.9	114.09	85.27	90.41	123.23	91.01	111.25	109.56	93.39	129.14	88.97
Merged-chr11-101972292-3	chr11	101972206	101972406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5291.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	51.28	33.96	33.09	46.66	60.14	63.34	36.54	43.4	58.61	93.39	66.33	47.3
Merged-chr10-44458727-3	chr10	44458588	44458788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	60.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	45.63	47.04	45.07	49.87	58.5	61.46	47.5	39.11	53.3	53.22	69.34	22.56
Merged-chr8-128076451-3	chr8	128076344	128076544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201781.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	21.8	39.24	65.03	33.38	40.09	47.35	46.84	45.39	50.55	34.14	56.78	42.29
Merged-chr11-54068050-3	chr11	54067952	54068152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	965.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	48.05	37.98	50.77	29.76	34.36	50.8	33.22	32.27	46.03	54.73	61.81	19.42
Merged-chr9-75434291-3	chr9	75434203	75434403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7221.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	65.82	58.61	57.05	32.98	66.68	92.19	44.18	59.22	91.26	122.01	84.92	61.09
Merged-chr7-66124795-3	chr7	66124699	66124899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	15284.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	63.8	44.52	71.31	75.21	69.14	57.7	60.12	78.84	51.73	40.17	77.38	47.93
Merged-chr13-114818156-3	chr13	114818040	114818240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-97.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	67.43	69.67	88.99	69.18	72.0	79.33	78.39	89.19	83.59	99.42	107.03	58.58
Merged-chr2-131517748-3	chr2	131517646	131517846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	25884.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	29.88	30.94	22.25	34.59	28.23	30.42	20.26	25.74	43.66	23.1	37.18	14.72
Merged-chr1-130715901-4	chr1	130715812	130716012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-91.0	NR_027859	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	46.44	50.31	25.1	45.45	43.36	51.11	35.87	39.7	43.47	49.71	56.78	49.81
Merged-chr6-120479451-3	chr6	120479347	120479547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	14360.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	140.92	99.35	128.92	143.99	118.64	171.21	113.27	127.21	128.04	116.99	169.34	84.27
Merged-chr1-151036710-3	chr1	151036624	151036824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43289.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	24.23	18.36	30.8	33.78	46.64	23.83	39.2	43.91	35.6	22.09	53.26	30.07
Merged-chrX-13230822-3	chrX	13230724	13230924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR72_RN|LTR|ERV1	5459.0	NR_045430	72122.0	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	61.38	36.72	47.35	40.22	58.91	63.34	28.57	47.47	40.52	39.67	59.29	46.68
Merged-chr18-53267790-3	chr18	53267680	53267880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	MMAR1|DNA|TcMar-Mariner	22118.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	71.07	64.89	143.18	96.93	103.09	83.72	133.2	137.5	127.85	94.4	176.37	90.22
Merged-chr9-21963547-3	chr9	21963445	21963645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010149)	promoter-TSS (NM_010149)	31.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	30.69	19.62	44.5	45.05	46.64	31.04	28.57	60.45	45.63	33.14	39.7	23.49
Merged-chr4-147904841-3	chr4	147904715	147904915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285922)	promoter-TSS (NM_001285922)	94.0	NM_001285922	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	32.3	38.48	31.95	31.37	32.32	43.9	29.56	22.35	34.22	44.19	28.14	33.21
Merged-chr13-60670798-3	chr13	60670706	60670906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	68595.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	94.08	82.5	75.3	94.92	97.78	111.0	52.82	114.53	113.88	125.53	118.08	71.74
Merged-chr6-85069446-3	chr6	85069334	85069534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177077)	promoter-TSS (NM_177077)	79.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	41.99	58.61	41.07	65.16	58.09	44.84	62.78	57.28	34.81	46.19	52.26	35.4
Merged-chr12-84752244-3	chr12	84752156	84752356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20856.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	70.26	53.83	114.66	53.49	82.64	73.38	59.13	89.27	75.72	78.83	74.87	60.15
Merged-chr15-64100660-3	chr15	64100554	64100754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40206.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	103.37	77.47	104.96	124.68	107.59	117.28	66.1	115.57	98.74	128.04	131.65	71.11
Merged-chr11-97188099-3	chr11	97187979	97188179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-187.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	208.76	215.06	185.97	202.31	222.14	263.71	143.83	184.23	256.28	271.14	275.36	114.03
Merged-chr2-26941692-3	chr2	26941593	26941793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198628, intron 5 of 18)	intron (NM_198628, intron 5 of 18)	7624.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	119.52	112.68	118.08	120.26	121.91	136.72	95.33	120.48	169.15	145.61	183.41	108.7
Merged-chr4-67448027-2	chr4	67447910	67448110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	620459.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	16.15	13.08	17.11	26.55	31.5	59.27	33.22	54.28	5.31	3.51	5.02	1.25
Merged-chr2-122164491-3	chr2	122164376	122164576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3776.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	35.13	45.53	51.91	40.22	51.14	42.65	38.2	56.78	66.48	44.19	58.29	26.63
Merged-chr1-74435763-3	chr1	74435653	74435853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009509)	TTS (NM_009509)	26369.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	48.86	32.45	47.92	28.15	58.91	54.88	37.2	45.87	53.3	48.7	59.8	24.75
Merged-chr10-20123587-3	chr10	20123482	20123682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 23 of 29)	intron (NM_008580, intron 23 of 29)	-25338.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	18.57	15.09	25.1	18.1	37.64	55.19	27.24	44.02	37.96	45.19	38.69	18.48
Merged-chr16-91061765-3	chr16	91061670	91061870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	7375.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	64.2	44.77	82.15	67.97	81.0	84.66	62.12	100.63	88.12	76.82	98.99	68.92
Merged-chr3-27153926-3	chr3	27153829	27154029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177626)	promoter-TSS (NM_001177626)	-51.0	NM_001177626	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	246.72	214.8	200.8	196.27	232.37	301.34	165.09	258.31	276.15	298.75	348.22	147.24
Merged-chr1-64928103-3	chr1	64928011	64928211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	LTR79|LTR|ERVL	28713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	44.82	31.44	58.76	36.2	46.64	54.88	48.16	61.51	57.04	56.74	57.28	38.22
Merged-chr4-109666876-3	chr4	109666763	109666963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-107.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	90.85	83.26	87.28	82.05	71.18	74.94	65.44	89.38	83.4	98.91	128.64	65.47
Merged-chr7-122021120-3	chr7	122021004	122021204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028758)	promoter-TSS (NM_028758)	94.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	29.07	31.19	22.82	32.58	44.18	33.55	24.25	25.57	32.45	33.14	39.7	23.49
Merged-chr15-5446570-3	chr15	5446471	5446671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49747.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	57.74	60.87	66.17	59.12	92.87	102.54	48.83	89.89	86.35	57.74	71.86	61.09
Merged-chr7-80261263-3	chr7	80261178	80261378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028053)	promoter-TSS (NR_028053)	63.0	NM_031375	83485.0	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	16.15	24.4	15.4	26.95	20.86	17.56	16.28	19.96	23.01	28.62	22.61	19.42
Merged-chr1-92907437-3	chr1	92907341	92907541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_138577)	TTS (NR_138577)	452.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	37.15	21.63	37.65	26.14	45.82	36.37	17.94	34.85	61.37	56.24	76.38	36.34
Merged-chr10-91137568-3	chr10	91137481	91137681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13618.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	98.93	52.57	107.25	99.34	142.37	134.52	128.22	131.38	129.03	117.49	183.91	75.81
Merged-chr4-151988911-3	chr4	151988801	151989001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145929)	promoter-TSS (NM_001145929)	85.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	20.19	21.88	22.82	15.28	38.46	20.7	24.91	25.74	26.75	23.6	29.65	15.98
Merged-chr3-98026250-3	chr3	98026211	98026411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12773.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	36.75	19.37	42.21	20.11	20.05	26.03	17.94	13.85	24.39	24.1	25.12	11.9
Merged-chr8-126869131-3	chr8	126869019	126869219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	20099.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	76.72	62.88	105.53	93.71	107.59	117.59	106.96	109.91	108.97	107.45	117.08	83.02
Merged-chr12-21315802-2	chr12	21315691	21315891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	-601.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	22.21	18.11	7.99	21.32	29.86	31.04	20.93	32.83	2.36	3.01	2.01	4.7
Merged-chr9-57468041-3	chr9	57467886	57468086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020270)	promoter-TSS (NM_020270)	74.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	29.07	35.97	15.97	17.29	29.05	43.9	37.87	15.31	35.99	31.63	22.61	15.66
Merged-chr16-65739858-1	chr16	65739758	65739958	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75775.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	84.38	99.42	119.59	54.82
Merged-chr2-129360828-1	chr2	129360728	129360928	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-9074.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	9.69	4.78	6.28	5.23	12.27	11.92	14.95	14.69	9.44	7.03	6.53	9.71
Merged-chr3-83863142-3	chr3	83863047	83863247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21539.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	188.57	205.25	213.35	173.75	164.46	283.78	194.32	196.71	276.54	265.11	349.23	155.38
Merged-chr17-48409051-3	chr17	48408954	48409154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357903)	promoter-TSS (NM_001357903)	766.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	48.46	57.1	61.04	40.22	52.37	69.93	42.85	55.65	71.79	79.33	71.35	51.38
Merged-chr7-7281596-3	chr7	7281483	7281683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302386)	TTS (NM_001302386)	-3294.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	82.37	81.75	123.22	107.39	132.55	136.72	139.84	190.01	133.55	86.86	156.27	111.52
Merged-chr6-142746962-3	chr6	142746864	142747064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9722.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	42.4	36.72	33.09	42.23	51.14	47.35	51.49	76.96	75.33	53.22	66.83	57.95
Merged-chr1-124073255-3	chr1	124073183	124073383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27724.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	54.11	45.02	65.6	88.08	83.87	74.63	101.64	148.43	87.92	80.34	119.09	52.32
Merged-chr3-88745178-3	chr3	88745073	88745273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	27426.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	14.94	22.39	19.97	2.41	17.59	29.79	18.27	11.61	30.09	21.09	17.59	5.64
Merged-chr2-153345664-3	chr2	153345583	153345783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039939)	promoter-TSS (NM_001039939)	127.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	120.33	122.75	96.41	98.94	126.41	139.23	91.01	88.04	156.17	138.58	183.41	92.41
Merged-chrX-101429104-3	chrX	101429002	101429202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252518)	promoter-TSS (NM_001252518)	-549.0	NM_023144	53610.0	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	37.96	29.93	33.66	20.51	30.27	40.45	19.27	29.1	41.3	46.7	29.65	18.8
Merged-chr15-101977530-3	chr15	101977429	101977629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-23242.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	101.76	104.64	102.68	94.11	123.96	170.58	115.6	124.77	180.36	141.59	176.37	106.51
Merged-chr10-79746643-3	chr10	79746537	79746737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172551)	promoter-TSS (NM_172551)	-56.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	57.34	54.58	85.0	59.93	62.18	100.66	49.83	74.33	106.21	65.27	128.13	54.2
Merged-chr1-120517767-3	chr1	120517675	120517875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12751.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	108.62	119.48	129.49	110.6	61.37	68.36	65.11	71.02	134.14	161.68	177.38	98.99
Merged-chr13-64129373-3	chr13	64129319	64129519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-89.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	17.36	15.85	9.13	24.53	27.0	19.13	17.61	32.24	25.96	30.63	43.72	19.11
Merged-chr11-29549601-3	chr11	29549508	29549708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163521, intron 1 of 11)	intron (NM_001163521, intron 1 of 11)	-1568.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	45.63	52.82	40.5	32.18	51.55	79.96	43.51	57.62	81.63	81.34	83.41	29.45
Merged-chr10-75282853-3	chr10	75282741	75282941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-34036.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	57.34	31.94	103.25	102.96	68.32	74.32	77.4	95.94	70.22	57.74	103.01	76.12
Merged-chr2-103606351-3	chr2	103606240	103606440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40030.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	33.11	26.41	50.2	37.0	47.87	48.6	26.57	47.52	48.98	62.26	58.29	43.86
Merged-chr8-41073983-1	chr8	41073883	41074083	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-19187.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.0	1.26	1.14	1.61	0.0	2.82	4.32	2.44	53.7	37.66	71.35	33.83
Merged-chr14-102980035-3	chr14	102979936	102980136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	2596.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	39.57	25.15	61.61	37.4	42.14	30.1	26.91	70.21	52.71	40.17	84.92	39.47
Merged-chr1-37000498-3	chr1	37000405	37000605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-60978.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	56.94	71.18	57.62	41.43	56.05	41.71	26.24	35.05	57.63	43.18	58.29	26.31
Merged-chr3-75956286-3	chr3	75956182	75956382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175193, exon 1 of 15)	exon (NM_175193, exon 1 of 15)	667.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	34.73	31.19	37.08	41.83	57.68	41.08	41.19	58.01	53.11	29.62	63.82	34.77
Merged-chr3-90476023-3	chr3	90475858	90476058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-243.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	105.79	102.87	123.22	127.5	128.87	157.1	105.63	84.9	157.74	144.1	158.28	135.96
Merged-chr6-72407341-3	chr6	72407241	72407441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6967.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	27.46	27.92	34.23	25.34	44.59	54.56	24.25	32.05	69.63	40.67	56.78	31.95
Merged-chr10-57727856-3	chr10	57727759	57727959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-57064.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	114.68	120.48	147.75	131.12	146.05	149.57	103.64	185.44	140.24	119.5	210.04	98.68
Merged-chr10-63176607-3	chr10	63176502	63176702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182992, intron 2 of 19)	Charlie1a|DNA|hAT-Charlie	27350.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	84.39	69.17	93.55	116.24	78.14	76.51	57.47	105.17	70.22	73.81	95.97	67.04
Merged-chr2-102638295-3	chr2	102638186	102638386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173749, intron 8 of 10)	intron (NM_173749, intron 8 of 10)	-20403.0	NM_001077514	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	44.42	56.34	46.78	39.01	45.82	41.08	37.87	47.24	47.6	31.63	58.79	41.98
Merged-chr13-52061622-3	chr13	52061516	52061716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	43.21	29.43	50.77	61.94	49.09	45.15	58.13	66.7	62.55	55.23	98.99	43.23
Merged-chr2-30952928-3	chr2	30952842	30953042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133673)	promoter-TSS (NM_133673)	-59.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	40.78	47.54	37.08	41.43	49.09	63.97	23.92	38.38	67.46	71.8	65.32	49.18
Merged-chr6-29245935-3	chr6	29245841	29246041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26547.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	190.19	166.01	224.76	181.39	178.37	252.74	212.26	235.85	227.17	227.45	319.58	133.45
Merged-chr7-80766265-3	chr7	80766184	80766384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 4 of 37)	intron (NM_016721, intron 4 of 37)	37047.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	42.8	30.18	25.1	10.86	36.41	65.85	27.57	23.16	42.88	43.18	27.13	16.92
Merged-chr7-99101898-3	chr7	99101809	99102009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39235.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	103.78	91.56	75.3	99.75	132.14	108.81	79.39	86.89	102.47	93.39	95.97	73.3
Merged-chrX-70477139-3	chrX	70477037	70477237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357750)	promoter-TSS (NM_001357750)	43.0	NM_001033328	236848.0	Mm.24569	NM_001033328	ENSMUSG00000073139	Tmem185a	ee3	transmembrane protein 185A	protein-coding	21.8	28.67	25.1	33.38	64.23	30.73	27.24	35.78	39.73	57.24	48.24	37.28
Merged-chrX-155262428-3	chrX	155262341	155262541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313718)	promoter-TSS (NM_001313718)	-2.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	58.95	53.07	76.44	52.29	85.91	83.72	58.13	79.68	87.33	72.81	118.08	62.65
Merged-chr10-112140011-3	chr10	112139918	112140118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23603.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	62.59	56.59	61.04	85.27	96.96	97.52	50.49	101.5	105.62	94.4	108.54	72.99
Merged-chr7-39552680-3	chr7	39552635	39552835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	34969.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	177.67	158.46	156.31	158.87	151.78	196.3	154.13	243.14	213.6	210.88	294.45	151.62
Merged-chr11-75461442-3	chr11	75461340	75461540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-99.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	243.08	233.42	253.85	199.09	268.37	375.66	210.6	228.59	326.9	424.78	391.94	192.97
Merged-chr11-29808774-3	chr11	29808704	29808904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	16864.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	63.8	62.38	114.09	127.5	93.28	84.04	128.55	191.1	103.26	63.27	184.91	84.58
Merged-chr1-125560469-3	chr1	125560371	125560571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356294)	promoter-TSS (NM_001356294)	-124.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	200.28	216.06	235.03	227.24	250.37	337.4	236.84	280.49	277.92	308.79	369.32	192.97
Merged-chr18-4303315-3	chr18	4303209	4303409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49644.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	23.82	28.42	21.11	26.14	38.86	29.79	20.93	33.64	43.86	44.19	46.23	28.82
Merged-chr6-86404255-3	chr6	86404152	86404352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011585)	promoter-TSS (NM_011585)	33.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	71.07	64.89	70.17	50.68	87.96	102.54	53.81	77.47	98.74	99.92	132.15	59.83
Merged-chr9-88404312-3	chr9	88404193	88404393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359958, intron 12 of 28)	intron (NM_001359958, intron 12 of 28)	34658.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	72.68	55.59	95.27	73.2	77.73	81.53	73.41	99.93	84.97	66.28	126.63	53.88
Merged-chr4-99929429-3	chr4	99929319	99929519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-32.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	33.92	36.72	51.91	61.54	62.18	68.99	53.81	79.12	69.82	69.79	92.46	44.8
Merged-chr2-3668902-3	chr2	3668797	3668997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44561.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	73.89	73.19	83.29	138.36	90.82	87.8	75.4	107.61	100.7	83.85	126.63	60.46
Merged-chr15-57906838-3	chr15	57906735	57906935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5364.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	89.64	89.29	95.84	74.0	128.46	151.77	113.6	119.41	164.82	173.73	174.36	90.53
Merged-chr16-4719254-3	chr16	4719149	4719349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	107.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	20.19	24.65	29.09	26.95	34.77	41.39	35.54	21.08	36.58	45.19	26.63	25.69
Merged-chr14-55559999-3	chr14	55559921	55560121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133734)	promoter-TSS (NM_133734)	-8.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	35.53	41.75	40.5	38.21	42.96	39.2	16.28	36.87	47.4	59.75	75.87	46.36
Merged-chr14-27381573-3	chr14	27381483	27381683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 4 of 10)	URR1A|DNA|hAT-Charlie	20194.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	53.3	24.65	33.09	47.06	42.55	48.6	56.47	55.99	47.4	34.65	56.28	32.58
Merged-chr6-129407509-3	chr6	129407452	129407652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1310.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	54.11	46.53	68.45	102.96	64.23	64.91	88.69	96.08	57.24	69.79	63.31	30.07
Merged-chr5-103691712-3	chr5	103691607	103691807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35975.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	41.59	37.23	47.35	35.39	31.09	28.54	22.92	45.08	65.89	56.74	65.83	43.23
Merged-chr9-71167246-3	chr9	71167143	71167343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1533.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	87.62	59.86	68.45	80.44	99.41	84.98	67.43	89.94	118.21	107.45	121.6	70.17
Merged-chr19-56822279-3	chr19	56822159	56822359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3950.0	NM_001002238	83561.0	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	115.08	113.44	104.96	96.13	118.64	145.5	73.74	96.93	128.44	170.72	155.27	70.48
Merged-chr3-32709107-1	chr3	32709007	32709207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019673, intron 1 of 13)	CpG	561.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	28.67	25.91	17.11	17.7	28.64	22.26	25.24	21.56	25.57	37.16	24.62	26.94
Merged-chr10-120227053-3	chr10	120226959	120227159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025431)	promoter-TSS (NM_025431)	-1.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	25.84	34.21	16.54	17.7	61.77	33.87	35.87	23.38	43.07	47.2	58.79	33.21
Merged-chr17-72904019-3	chr17	72903912	72904112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14293.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	58.55	48.54	56.48	77.62	60.55	73.38	64.11	94.99	93.62	59.75	94.97	47.3
Merged-chr1-181842465-3	chr1	181842360	181842560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	-59.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	136.89	144.13	166.0	166.51	155.87	171.84	115.93	158.27	175.05	177.24	230.64	100.87
Merged-chr15-38483524-3	chr15	38483421	38483621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7026.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	63.8	52.57	96.98	72.8	73.64	79.65	94.0	113.08	70.02	53.73	123.61	65.79
Merged-chr6-15758679-3	chr6	15758565	15758765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	138.5	125.76	132.35	203.92	169.78	181.87	217.9	224.13	225.01	191.8	217.57	141.91
Merged-chr8-70646113-3	chr8	70646073	70646273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023217)	TTS (NM_023217)	13565.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	81.16	78.23	81.58	69.58	40.91	49.23	46.17	46.29	110.34	91.38	105.02	67.98
Merged-chr18-80255247-3	chr18	80255169	80255369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164420)	promoter-TSS (NM_001164420)	24.0	NM_001164420	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	47.24	22.89	29.66	24.13	48.68	54.56	34.21	45.17	52.52	35.65	66.33	28.82
Merged-chr1-127270680-4	chr1	127270539	127270739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	C-rich|Low_complexity|Low_complexity	65653.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	89.64	32.45	64.46	74.81	69.96	46.72	56.47	122.92	47.8	32.64	50.25	27.88
Merged-chr2-27476063-2	chr2	27475962	27476162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-389.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	21.4	18.36	15.97	19.71	14.73	18.81	7.31	10.32	13.18	26.11	24.62	8.77
Merged-chr2-102977993-3	chr2	102977890	102978090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76325.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	47.24	57.1	40.5	52.69	46.64	59.89	54.81	41.13	55.86	66.28	45.22	36.65
Merged-chr1-170939471-3	chr1	170939389	170939589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11906.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	16.56	12.83	26.81	23.73	67.09	52.68	51.15	73.57	62.94	54.73	59.29	44.8
Merged-chr7-127769097-3	chr7	127769016	127769216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	-699.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	100.55	82.5	102.11	85.27	105.14	122.29	77.4	80.36	129.22	135.07	148.23	78.0
Merged-chr14-25493722-3	chr14	25493640	25493840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34555.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	42.4	42.01	49.06	33.38	49.91	93.76	44.84	75.9	59.4	40.17	51.25	35.4
Merged-chr11-97436089-3	chr11	97436033	97436233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14027.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	54.11	40.24	38.22	41.02	36.82	41.71	33.88	42.7	32.45	44.69	28.14	17.54
Merged-chr7-25707731-3	chr7	25707632	25707832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11321.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	77.93	87.78	108.39	90.9	88.37	183.44	175.72	128.66	152.04	122.51	184.91	79.88
Merged-chr2-155729447-3	chr2	155729340	155729540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145537)	promoter-TSS (NM_145537)	35.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	32.71	28.17	39.36	30.57	48.27	54.88	29.56	45.39	43.66	67.78	73.86	29.45
Merged-chr6-87535262-4	chr6	87535121	87535321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1962.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	19.79	27.67	23.39	18.9	49.91	50.17	52.48	36.7	34.42	39.67	51.76	35.71
Merged-chr11-82890577-3	chr11	82890447	82890647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102717)	promoter-TSS (NR_102717)	77.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	18.98	24.15	27.38	30.97	20.86	31.98	34.55	20.44	24.0	30.13	30.15	22.24
Merged-chr10-30804046-3	chr10	30803914	30804114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358841)	promoter-TSS (NM_001358841)	-688.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	16.56	19.12	15.4	19.31	25.77	13.48	25.91	30.76	24.19	18.08	37.69	21.62
Merged-chr10-79857714-3	chr10	79857652	79857852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-2781.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	85.6	67.41	92.98	50.68	93.68	124.17	84.04	70.4	97.16	107.45	121.6	46.99
Merged-chr9-25486464-3	chr9	25486364	25486564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4867.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	31.9	32.45	74.73	64.75	86.73	99.4	85.7	139.26	96.38	80.34	129.14	43.86
Merged-chr5-33018751-3	chr5	33018653	33018853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-63.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	174.04	159.22	166.0	187.02	160.37	214.8	130.21	140.41	182.92	242.01	192.95	120.92
Merged-chr4-119733667-3	chr4	119733547	119733747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-74702.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	160.71	144.13	146.61	169.73	179.19	168.39	122.24	153.59	209.47	236.49	308.52	142.85
Merged-chr16-14112953-3	chr16	14112861	14113061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46313.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	23.02	34.71	26.24	32.98	29.86	41.39	26.24	40.79	43.27	35.65	31.15	28.51
Merged-chr7-101011981-3	chr7	101011829	101012029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008773)	promoter-TSS (NM_008773)	69.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	25.44	32.95	25.1	22.93	54.0	32.61	41.52	49.57	20.85	18.58	34.17	15.04
Merged-chr7-134693350-3	chr7	134693232	134693432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	MTD|LTR|ERVL-MaLR	22645.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	27.05	25.4	27.95	23.33	30.68	25.4	20.93	25.21	26.16	19.08	30.65	23.81
Merged-chr7-45525052-3	chr7	45524956	45525156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	1212.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	55.32	44.02	39.36	35.39	35.59	83.41	44.84	37.21	67.86	50.71	74.87	40.1
Merged-chr8-119826596-3	chr8	119826502	119826702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13977.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	26.65	19.87	21.68	18.9	38.05	33.87	21.26	31.15	41.11	43.18	41.2	15.35
Merged-chr18-12949307-3	chr18	12949202	12949402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7461.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	48.46	62.63	46.78	88.08	56.87	57.38	65.44	57.22	67.46	49.21	80.9	60.46
Merged-chr5-90904555-2	chr5	90904442	90904642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	643.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	39.57	16.6	6.85	6.03	8.59	46.41	6.31	1.99	39.53	51.72	20.6	2.51
Merged-chr17-55726394-3	chr17	55726286	55726486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13750.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	29.88	15.34	25.67	32.18	40.91	39.51	29.56	40.49	26.16	33.14	37.18	17.23
Merged-chr1-193173549-3	chr1	193173451	193173651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-26.0	NM_001160359	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	234.2	211.54	249.29	235.69	272.46	312.32	200.96	283.66	325.13	314.32	364.3	216.47
Merged-chr3-57737041-1	chr3	57736941	57737141	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	984.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	4.04	4.02	1.14	4.42	14.73	3.14	3.65	9.81	11.8	5.02	3.01	6.27
Merged-chr10-96691143-3	chr10	96691069	96691269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	101.76	112.94	83.86	21.32	89.59	112.26	68.76	39.08	151.06	162.68	107.03	52.94
Merged-chr12-71137199-3	chr12	71137111	71137311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286203)	promoter-TSS (NM_001286203)	363.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	27.46	17.86	35.37	20.51	29.46	26.03	22.92	25.35	28.32	35.15	16.58	19.42
Merged-chr15-97348604-3	chr15	97348489	97348689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-101302.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	20.19	13.08	53.05	22.12	27.82	31.67	29.23	36.2	30.49	25.61	55.27	20.05
Merged-chr6-82652978-3	chr6	82652879	82653079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025882)	promoter-TSS (NM_025882)	-114.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	132.44	113.19	127.78	101.76	131.73	170.58	78.72	126.65	150.86	144.61	210.04	83.64
Merged-chr5-30013061-6	chr5	30012948	30013148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031168)	promoter-TSS (NM_031168)	-66.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	35.53	39.49	43.35	23.33	30.68	59.27	27.57	18.2	54.48	87.37	54.27	30.39
Merged-chr19-8893010-3	chr19	8892914	8893114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176843)	promoter-TSS (NM_176843)	27.0	NM_176843	109077.0	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	25.44	17.36	18.83	24.94	17.59	37.94	7.31	11.02	24.39	21.59	27.64	16.92
Merged-chr17-32608266-3	chr17	32608159	32608359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13060.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	40.78	22.13	43.35	30.16	57.27	35.43	34.88	58.46	48.78	41.17	65.32	41.04
Merged-chr9-99122936-3	chr9	99122851	99123051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	17260.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	16.15	30.18	52.48	55.5	14.73	25.71	20.93	42.31	69.04	45.69	70.35	61.71
Merged-chr16-76763071-3	chr16	76762969	76763169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	16023.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	37.96	21.38	18.83	15.69	42.14	59.89	49.49	49.63	54.09	31.63	46.23	20.36
Merged-chr1-36445341-3	chr1	36445230	36445430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310517)	promoter-TSS (NM_001310517)	-59.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	46.03	37.98	47.92	31.77	65.46	66.48	25.58	48.76	75.33	52.72	92.46	37.91
Merged-chr2-101763239-3	chr2	101763146	101763346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	34461.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	133.66	106.65	152.31	173.75	128.87	114.14	137.85	142.46	125.88	99.42	171.85	99.93
Merged-chr6-52477639-3	chr6	52477561	52477761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14790.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	81.16	76.72	78.72	98.14	73.23	79.96	69.42	92.22	64.71	97.91	113.06	66.73
Merged-chr1-105988260-3	chr1	105988085	105988285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	2097.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	16.56	19.62	31.38	35.8	22.91	32.93	26.57	50.5	39.34	34.65	51.76	41.04
Merged-chr12-111669362-3	chr12	111669271	111669471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021273)	TTS (NM_021273)	2967.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	23.82	18.61	30.23	26.95	40.91	40.76	18.27	33.06	50.75	39.16	53.77	33.21
Merged-chr19-41911808-3	chr19	41911701	41911901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023418)	promoter-TSS (NM_023418)	-70.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	164.34	154.94	127.21	136.75	145.23	198.18	103.64	126.87	185.67	194.82	173.36	121.86
Merged-chr8-84414392-2	chr8	84414291	84414491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-973.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	69.45	62.38	70.17	80.44	96.55	121.35	63.78	91.09	0.98	0.0	4.02	1.25
Merged-chr11-82101705-3	chr11	82101599	82101799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011331)	promoter-TSS (NM_011331)	-146.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	33.52	54.08	71.31	38.21	51.96	90.94	40.86	36.03	62.55	77.83	77.88	32.27
Merged-chr4-120978476-3	chr4	120978375	120978575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 4 of 9)	intron (NM_133716, intron 4 of 9)	-5153.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	13.73	23.64	25.1	33.78	26.18	31.36	22.59	42.65	38.35	28.12	30.15	15.66
Merged-chr5-33658548-3	chr5	33658518	33658718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356983)	promoter-TSS (NM_001356983)	490.0	NM_001040435	21335.0	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	65.01	51.31	74.16	81.65	95.73	79.65	50.82	70.54	86.35	87.87	81.4	55.76
Merged-chr8-69089488-3	chr8	69089397	69089597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-275.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	20.59	15.09	27.95	26.55	18.41	34.18	21.92	23.66	23.6	19.58	25.12	12.22
Merged-chr19-4299770-3	chr19	4299690	4299890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	6432.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	16.96	13.08	26.81	22.52	20.05	20.38	24.58	22.99	28.91	23.6	29.14	23.81
Merged-chr1-184471545-3	chr1	184471445	184471645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86146.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	14.13	21.88	31.95	30.57	30.68	26.34	22.26	52.88	26.75	30.13	55.78	20.36
Merged-chr4-63556906-3	chr4	63556819	63557019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1844.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	18.57	14.09	17.68	15.69	32.32	28.22	15.61	40.85	31.27	33.14	31.66	16.29
Merged-chr9-110408242-3	chr9	110408127	110408327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081043)	promoter-TSS (NM_001081043)	-17.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	75.11	78.98	58.19	62.74	72.0	108.81	49.16	46.46	107.2	120.51	119.59	53.26
Merged-chr7-81345285-3	chr7	81345191	81345391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-57.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	58.55	65.4	45.64	57.11	65.87	70.87	37.54	34.91	80.05	88.87	81.9	46.05
Merged-chr1-80757598-3	chr1	80757492	80757692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	961.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	58.15	58.86	23.96	20.91	53.59	82.78	30.56	24.11	76.71	57.74	51.76	18.8
Merged-chr19-56740335-3	chr19	56740226	56740426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17954.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	62.99	39.74	33.66	44.64	54.82	70.87	53.15	54.0	72.18	67.78	51.25	32.58
Merged-chr6-71633474-3	chr6	71633381	71633581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-564.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	130.02	105.39	141.47	105.78	149.32	150.2	85.04	111.11	159.32	175.23	184.91	71.74
Merged-chr11-88973946-3	chr11	88973840	88974040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016706)	promoter-TSS (NM_016706)	5.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	38.76	24.9	35.94	19.31	37.23	39.2	32.88	34.63	45.43	43.18	52.26	27.25
Merged-chr7-145111589-3	chr7	145111504	145111704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96515.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	130.83	137.08	189.96	161.28	121.91	188.77	159.11	162.03	169.35	155.65	217.07	122.8
Merged-chr14-50838202-3	chr14	50838112	50838312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 35 of 54)	intron (NM_009351, intron 35 of 54)	30296.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	43.21	28.17	52.48	42.23	37.23	41.39	21.59	42.84	93.23	75.82	134.16	65.16
Merged-chr13-19418078-3	chr13	19417979	19418179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22266.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	56.13	54.33	47.35	34.59	50.32	71.49	35.54	37.85	68.84	50.21	71.35	30.7
Merged-chr7-31031940-3	chr7	31031848	31032048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001111073)	TTS (NM_001111073)	8369.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	41.19	43.51	62.75	48.26	59.73	67.42	66.1	67.82	119.78	109.46	131.15	69.86
Merged-chr5-105495346-3	chr5	105495233	105495433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24138.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	44.82	42.51	45.64	35.8	46.64	63.34	47.17	56.8	40.91	45.19	45.22	23.18
Merged-chr19-5806958-3	chr19	5806854	5807054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	44.42	30.69	40.5	41.43	61.77	51.74	25.91	44.94	66.48	38.16	42.71	40.41
Merged-chr10-75222780-3	chr10	75222686	75222886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145826, intron 2 of 18)	intron (NM_001145826, intron 2 of 18)	10396.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	263.27	282.21	296.64	294.01	255.69	359.67	251.79	272.41	388.66	441.35	444.19	243.72
Merged-chr13-60702048-3	chr13	60702012	60702212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	Tigger20a|DNA|TcMar-Tigger	84252.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	32.71	15.09	69.6	54.7	78.14	41.39	50.49	88.91	32.06	25.61	59.29	37.28
Merged-chr18-35562149-3	chr18	35562046	35562246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010771)	promoter-TSS (NM_010771)	-12.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	70.66	85.27	109.53	80.84	117.0	128.25	89.02	96.42	139.45	140.09	151.75	82.39
Merged-chrX-57707063-3	chrX	57706964	57707164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-203307.0	NM_001033360	245424.0	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	38.36	34.71	58.19	61.94	51.96	50.17	54.81	75.62	66.68	51.72	88.94	40.1
Merged-chr3-41564866-4	chr3	41564748	41564948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130186)	promoter-TSS (NM_001130186)	-32.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	11.31	13.33	13.69	9.25	11.05	14.11	11.63	15.59	10.62	24.1	16.58	13.16
Merged-chr10-84774820-3	chr10	84774716	84774916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	18768.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	64.61	40.24	77.58	62.34	70.77	75.57	64.44	95.8	83.99	63.77	113.06	57.01
Merged-chr18-83828588-3	chr18	83828482	83828682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	257980.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	57.34	37.98	51.91	45.05	31.09	63.03	48.83	46.21	59.01	65.27	65.32	27.88
Merged-chr1-180778364-3	chr1	180778261	180778461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35244.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	12.52	12.07	13.69	19.71	30.27	27.28	23.58	27.39	23.6	26.61	31.15	23.49
Merged-chr19-12436333-3	chr19	12436253	12436453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	8448.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	96.91	76.97	96.41	94.11	112.91	103.48	91.35	119.44	74.94	83.85	113.56	62.97
Merged-chr1-152797487-3	chr1	152797372	152797572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2681.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	28.27	17.36	17.68	17.29	24.55	31.98	13.29	22.32	27.34	21.09	15.07	10.65
Merged-chr5-147430159-3	chr5	147430161	147430361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359433, exon 1 of 20)	5' UTR (NM_001359433, exon 1 of 20)	105.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	37.55	53.32	51.34	39.82	18.82	50.17	39.86	34.77	34.81	54.23	57.79	33.21
Merged-chr6-126996553-3	chr6	126996450	126996650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18992.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	65.01	68.16	65.03	75.61	63.82	81.22	62.78	54.9	71.59	60.75	75.87	28.51
Merged-chr10-118053226-3	chr10	118053143	118053343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-88544.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	73.49	75.21	71.88	84.46	66.27	80.27	86.03	83.89	89.3	71.8	89.44	56.07
Merged-chr6-113306635-3	chr6	113306542	113306742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282126)	promoter-TSS (NM_001282126)	-495.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	313.35	291.52	350.83	298.43	376.38	454.99	287.0	391.6	369.97	436.33	497.96	270.04
Merged-chr5-135711065-3	chr5	135710973	135711173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	21928.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	54.92	72.19	107.82	82.85	90.0	119.16	76.4	109.63	94.41	111.97	137.18	77.38
Merged-chr2-5035916-3	chr2	5035813	5036013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 7 of 13)	ID_B1|SINE|B4	-23122.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	35.94	40.5	47.92	41.83	29.46	19.76	16.28	23.13	48.78	44.69	49.24	38.53
Merged-chr13-100786623-3	chr13	100786534	100786734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172301)	promoter-TSS (NM_172301)	-148.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	132.44	140.35	168.28	131.12	193.51	186.58	132.2	153.11	166.99	180.76	184.91	94.92
Merged-chr12-117481886-3	chr12	117481791	117481991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34588.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	63.8	59.11	75.87	67.17	60.14	94.7	88.36	78.14	115.85	78.33	142.2	72.68
Merged-chr3-105892626-3	chr3	105892525	105892725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11796.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	18.57	20.63	22.82	36.6	26.59	15.68	23.58	21.76	33.24	30.13	38.19	23.18
Merged-chr8-27128713-3	chr8	27128611	27128811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-79.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	33.92	35.47	42.78	36.6	34.36	64.91	39.2	45.53	45.63	49.21	63.82	29.45
Merged-chr15-59202524-3	chr15	59202411	59202611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104437.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	62.99	71.94	87.85	66.36	88.37	115.08	88.03	109.46	95.39	104.44	135.17	68.29
Merged-chr3-69699970-2	chr3	69699858	69700058	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22097.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	9.29	17.1	9.13	6.03	51.14	90.31	37.2	51.7	74.94	59.75	71.86	27.88
Merged-chr15-79030827-3	chr15	79030750	79030950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161712)	promoter-TSS (NM_001161712)	-24.0	NM_013847	26912.0	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	49.26	42.26	55.33	42.23	56.87	56.13	33.88	55.85	56.65	46.19	73.36	39.47
Merged-chr1-105964701-3	chr1	105964597	105964797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25585.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	29.48	20.12	18.25	34.99	26.18	32.3	31.22	44.78	43.47	36.65	69.34	25.06
Merged-chr4-47320069-3	chr4	47319968	47320168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-33154.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	39.57	19.62	16.54	40.62	41.32	35.43	33.88	39.08	38.55	41.67	34.67	22.24
Merged-chr16-91456084-3	chr16	91455996	91456196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9008.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	25.44	28.93	36.51	34.99	36.0	30.73	26.91	31.54	42.68	27.62	34.67	26.63
Merged-chr17-21488933-3	chr17	21488824	21489024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-64.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	58.55	60.37	77.58	83.26	94.09	95.95	63.44	129.81	136.5	88.37	213.05	107.76
Merged-chr3-52502890-3	chr3	52502797	52502997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14067.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	42.8	32.95	115.8	76.82	62.59	90.0	85.04	118.07	64.91	38.66	103.51	38.22
Merged-chr18-84087699-2	chr18	84087592	84087792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-466.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	40.78	28.17	44.5	56.31	28.64	37.94	21.26	36.62	29.5	29.62	45.22	31.95
Merged-chr1-63176784-3	chr1	63176793	63176993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	62.0	NM_018796	55949.0	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	28.67	36.72	23.39	41.83	31.5	54.56	35.87	27.5	52.52	62.26	37.69	36.65
Merged-chr10-8811899-1	chr10	8811799	8811999	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	L1MC4|LINE|L1	74171.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.83	1.76	8.56	7.24	4.91	5.33	19.93	17.52	2.56	0.0	1.51	0.94
Merged-chr2-91265155-3	chr2	91265068	91265268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	53.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	220.88	227.63	258.99	168.92	258.55	315.77	218.57	235.07	248.81	260.59	306.51	138.15
Merged-chr8-14892832-3	chr8	14892719	14892919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4283.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	58.15	28.42	51.34	37.81	52.37	63.34	48.5	65.13	66.28	58.75	53.77	40.1
Merged-chr17-36042833-3	chr17	36042718	36042918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	-76.0	NM_001359756	15039.0	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	84.8	90.55	99.26	74.41	139.5	151.46	116.26	104.33	93.43	109.96	77.88	51.38
Merged-chr15-57924264-3	chr15	57924170	57924370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	L1M2|LINE|L1	12071.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	44.42	35.47	66.17	50.68	41.32	38.88	43.51	71.19	45.24	34.14	90.45	58.89
Merged-chr15-78876368-3	chr15	78876281	78876481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145929)	promoter-TSS (NM_145929)	-809.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	34.73	35.97	45.64	29.36	22.91	50.17	20.93	18.25	30.88	30.63	36.18	20.99
Merged-chr2-30929081-3	chr2	30928976	30929176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23925.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	31.9	22.64	26.24	25.34	54.0	64.6	24.91	39.7	47.01	56.24	54.27	29.45
Merged-chr17-48261999-3	chr17	48261878	48262078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2317.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	30.69	26.66	41.07	29.36	31.09	47.98	31.22	22.37	40.71	35.15	39.19	13.78
Merged-chr18-9828176-1	chr18	9828076	9828276	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	120528.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.85	3.27	6.28	8.04	21.27	16.62	25.24	31.01	2.16	5.52	5.02	1.25
Merged-chr10-81378653-3	chr10	81378558	81378758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019757)	promoter-TSS (NM_019757)	-288.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	275.39	249.77	207.65	230.46	284.33	343.99	157.45	209.97	375.48	411.22	434.14	190.15
Merged-chr9-44396905-3	chr9	44396801	44397001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-26.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	240.66	228.64	195.67	176.97	263.05	306.36	172.73	215.89	272.81	315.32	343.7	129.07
Merged-chr4-123564147-3	chr4	123564057	123564257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-52263.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	41.99	49.05	48.49	58.72	40.5	67.1	36.21	59.89	52.12	79.33	68.34	51.38
Merged-chr4-116683242-3	chr4	116683142	116683342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2357.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	25.04	29.43	28.52	22.93	36.41	29.48	26.91	30.93	48.78	48.7	41.2	31.95
Merged-chr13-61804280-1	chr13	61804180	61804380	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32700.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.0	0.0	2.28	0.0	0.0	0.0	1.33	0.03	66.09	72.81	112.05	73.3
Merged-chr3-38144288-3	chr3	38144175	38144375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63844.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	39.57	35.47	29.66	35.8	21.68	23.83	17.61	26.16	30.88	32.64	44.72	20.05
Merged-chr18-75697630-3	chr18	75697517	75697717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201354)	promoter-TSS (NM_201354)	79.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	50.07	46.53	41.64	55.1	46.23	52.99	70.42	50.07	49.57	41.67	61.3	39.47
Merged-chr5-32135801-3	chr5	32135699	32135899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	-673.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	173.23	130.04	192.24	129.51	157.91	170.9	126.56	151.54	239.76	303.27	296.97	187.02
Merged-chr13-67061094-3	chr13	67060997	67061197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	73.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	89.24	67.91	77.58	94.11	87.14	90.62	98.32	111.48	100.31	95.9	123.61	75.81
Merged-chr2-68796214-3	chr2	68796115	68796315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65226.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	18.98	29.18	24.53	19.31	44.18	57.38	37.2	46.21	52.32	48.2	39.7	22.24
Merged-chr10-121375452-3	chr10	121375364	121375564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10374.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	61.38	61.37	88.42	58.32	78.96	81.84	72.08	102.2	116.24	67.28	136.17	62.97
Merged-chr18-53744689-3	chr18	53744592	53744792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-145.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	100.95	107.65	83.86	106.58	147.28	198.81	110.28	148.09	248.42	216.91	248.23	111.84
Merged-chr8-57530839-3	chr8	57530745	57530945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 11 of 11)	Lx7|LINE|L1	19002.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	42.8	36.97	42.78	71.19	61.77	54.88	48.5	66.22	44.25	50.21	84.92	36.03
Merged-chr7-99146258-3	chr7	99146133	99146333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5089.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	53.3	28.42	55.9	51.88	71.59	60.83	70.75	71.69	95.79	82.85	111.55	62.34
Merged-chr14-25861986-3	chr14	25861883	25862083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	19828.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	53.7	47.29	85.57	65.16	73.23	85.29	62.12	82.68	76.51	75.32	97.98	46.99
Merged-chr10-78412994-3	chr10	78412888	78413088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010925)	promoter-TSS (NM_010925)	55.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	67.43	76.72	69.03	65.16	78.55	93.13	68.43	69.36	123.32	104.44	83.91	59.83
Merged-chr4-126103858-3	chr4	126103753	126103953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-104.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	162.33	131.05	194.53	137.55	172.23	193.16	125.89	135.34	185.87	210.38	212.05	107.14
Merged-chr6-51545415-3	chr6	51545299	51545499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	106.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	73.49	71.69	65.03	65.96	83.46	93.76	54.48	75.36	115.06	100.42	99.99	44.17
Merged-chr7-130847391-3	chr7	130847308	130847508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18316.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	18.98	22.64	31.38	35.8	26.59	32.61	25.91	42.48	36.58	19.58	40.2	21.62
Merged-chr9-99090121-3	chr9	99090025	99090225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 7 of 23)	intron (NM_029094, intron 7 of 23)	50086.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	37.55	37.48	36.51	47.86	53.18	55.19	54.48	61.91	68.64	59.75	72.36	49.18
Merged-chr16-49965794-3	chr16	49965724	49965924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9994.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	28.27	29.18	34.8	24.94	32.32	43.27	40.52	27.9	32.85	49.21	48.74	20.68
Merged-chr3-81982719-3	chr3	81982618	81982818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6990.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	17.77	26.91	18.25	21.72	46.23	43.59	38.2	56.97	48.78	36.15	61.3	30.7
Merged-chr16-45174048-3	chr16	45173959	45174159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356366, intron 4 of 10)	Lx8|LINE|L1	15230.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	87.22	46.78	95.84	107.79	83.46	81.84	80.39	126.87	84.58	54.73	130.14	51.06
Merged-chr12-81754848-3	chr12	81754749	81754949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	26321.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	65.01	54.08	91.84	93.71	71.59	77.45	67.43	82.49	83.2	82.35	99.99	68.92
Merged-chr4-151058098-3	chr4	151058007	151058207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-154.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	199.07	215.81	207.65	222.01	245.87	297.89	161.77	189.17	243.7	288.71	337.17	157.26
Merged-chr11-60936151-2	chr11	60936051	60936251	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	MIRb|SINE|MIR	4094.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	7.27	9.31	12.55	6.84	16.36	14.74	11.29	17.78	18.29	18.08	28.14	20.05
Merged-chr6-8059412-1	chr6	8059312	8059512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 26 of 34)	intron (NM_001037865, intron 26 of 34)	133205.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	68.65	91.56	104.96	129.11	1.64	0.0	0.66	1.43	0.39	0.0	0.0	0.94
Merged-chr6-34371868-3	chr6	34371790	34371990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12357.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	41.99	36.47	42.21	28.96	38.86	46.72	23.58	35.83	40.52	36.15	50.75	23.49
Merged-chr14-20734574-3	chr14	20734479	20734679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-17.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	121.95	106.4	154.59	145.19	150.14	223.58	140.84	182.13	172.1	174.23	242.2	115.28
Merged-chr12-102757879-3	chr12	102757785	102757985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025666)	promoter-TSS (NM_025666)	-75.0	NM_001142938	100233175.0	Mm.291222	NM_001142938	ENSMUSG00000091931	Gon7	-	GON7, KEOPS complex subunit homolog	protein-coding	176.86	150.67	167.14	155.25	160.78	192.53	117.26	168.11	180.56	183.27	194.46	109.33
Merged-chr9-16233746-3	chr9	16233634	16233834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	MTC|LTR|ERVL-MaLR	144497.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	21.0	20.12	33.66	22.93	33.96	26.34	28.9	43.09	49.17	25.61	45.22	30.07
Merged-chr14-73386790-3	chr14	73386705	73386905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1516.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	18.98	15.59	28.52	28.15	20.46	17.56	30.56	41.38	43.07	32.13	37.18	25.69
Merged-chr4-155487944-3	chr4	155487841	155488041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3420.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	22.21	15.09	19.4	20.51	31.09	22.26	12.95	18.76	31.47	19.08	19.09	20.99
Merged-chr17-81670343-3	chr17	81670217	81670417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	CpG	68070.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	15.34	13.33	14.83	11.66	27.82	24.46	13.95	18.81	13.96	18.08	18.59	5.95
Merged-chr11-16951269-3	chr11	16951187	16951387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110425)	promoter-TSS (NR_110425)	-5.0	NR_110423	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	201.09	208.52	219.63	238.5	245.46	304.79	198.97	267.87	354.63	309.8	382.89	149.43
Merged-chr13-9599522-3	chr13	9599415	9599615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 17 of 36)	ORR1E|LTR|ERVL-MaLR	164295.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	27.46	15.09	23.39	20.91	31.09	27.28	26.24	25.35	31.08	25.61	28.64	23.49
Merged-chr3-100162471-3	chr3	100162359	100162559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	-4.0	NM_010269	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	96.51	77.97	110.67	137.15	91.23	95.01	96.66	135.7	135.52	134.06	161.3	95.55
Merged-chr1-133133676-3	chr1	133133581	133133781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	2515.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	115.49	115.45	140.9	121.87	138.28	162.12	95.33	143.41	173.09	143.1	159.29	90.53
Merged-chr1-134455548-3	chr1	134455439	134455639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153128)	promoter-TSS (NM_153128)	8.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	30.28	23.9	14.26	18.9	36.0	27.59	12.62	18.17	31.08	34.65	40.7	23.81
Merged-chr13-34875493-3	chr13	34875376	34875576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-18.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	47.24	50.56	61.61	47.46	61.77	52.68	30.23	46.07	59.99	51.21	61.3	44.48
Merged-chr15-25891771-3	chr15	25891667	25891867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 2 of 8)	ID_B1|SINE|B4	-41785.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	42.8	19.62	51.91	49.87	51.96	49.54	55.14	81.73	49.37	35.65	86.43	41.04
Merged-chr4-129189798-3	chr4	129189702	129189902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029036)	promoter-TSS (NM_029036)	7.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	124.77	121.74	118.08	98.54	122.32	174.35	85.04	84.56	142.01	172.72	141.7	98.99
Merged-chr4-117191950-1	chr4	117191850	117192050	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-9326.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.4	3.27	1.14	0.0	9.82	17.87	8.64	4.93	0.2	1.0	0.0	3.13
Merged-chr18-10182225-3	chr18	10182113	10182313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009071)	promoter-TSS (NM_009071)	-421.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	196.24	189.9	188.82	210.75	191.87	259.95	166.09	183.84	249.99	302.27	316.56	143.16
Merged-chr19-5803661-3	chr19	5803557	5803757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-985.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	156.67	149.16	152.88	134.33	123.55	134.21	87.03	103.37	146.53	144.1	110.04	88.03
Merged-chr10-127667793-3	chr10	127667706	127667906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	683.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	104.99	100.61	94.7	100.15	90.41	87.49	93.34	73.93	151.65	166.2	177.88	83.64
Merged-chr5-72262161-3	chr5	72262065	72262265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	58822.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	72.28	53.07	95.84	92.51	81.0	77.45	57.8	111.06	86.15	85.86	107.53	72.99
Merged-chr18-23954731-3	chr18	23954629	23954829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	41.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	86.82	71.69	82.15	83.66	103.91	92.5	98.65	84.11	93.82	87.37	135.67	49.18
Merged-chr10-75835555-3	chr10	75835470	75835670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010361)	promoter-TSS (NM_010361)	-689.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	117.91	95.08	96.41	79.64	113.32	136.09	97.66	127.57	129.22	104.44	117.58	93.35
Merged-chr13-8842436-3	chr13	8842342	8842542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	28602.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	23.42	24.65	23.39	21.72	17.59	18.5	20.93	47.16	35.99	16.57	48.74	19.42
Merged-chrX-7319343-3	chrX	7319248	7319448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243762)	promoter-TSS (NM_001243762)	10.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	84.39	94.32	108.96	111.41	90.0	97.83	79.72	103.01	94.8	137.58	130.65	65.79
Merged-chr4-136035294-3	chr4	136035198	136035398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13649.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	44.42	27.42	45.07	55.5	40.5	51.74	26.91	45.5	58.02	44.69	43.72	31.64
Merged-chr8-70506609-3	chr8	70506513	70506713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151646)	promoter-TSS (NR_151646)	139.0	NM_001357209	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	66.22	60.62	53.62	71.59	56.87	81.53	91.68	47.38	47.8	54.23	50.25	43.23
Merged-chr7-132620180-3	chr7	132620069	132620269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	9526.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	33.92	31.69	59.33	51.08	42.55	39.2	37.54	52.43	72.38	32.64	91.45	45.11
Merged-chr1-181842033-2	chr1	181841937	181842137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133815, intron 1 of 13)	CpG	364.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	47.24	51.31	59.9	59.12	41.32	47.98	50.82	42.48	47.01	43.68	71.35	32.89
Merged-chr9-100415476-2	chr9	100415374	100415574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70999.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	19.38	20.63	24.53	22.52	5.73	16.31	17.94	31.49	5.7	0.0	4.02	7.52
Merged-chr11-57801541-3	chr11	57801439	57801639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	-72.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	78.74	83.51	122.08	90.49	128.05	112.89	83.04	133.85	145.55	92.39	125.12	67.98
Merged-chr1-177681393-3	chr1	177681301	177681501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38458.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	37.55	37.23	32.52	30.57	68.73	113.2	50.82	68.64	82.41	94.9	106.53	50.75
Merged-chr15-68258945-3	chr15	68258845	68259045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-89.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	93.68	75.46	73.59	94.52	106.78	99.4	57.8	94.15	129.03	115.99	177.88	78.63
Merged-chr6-87503054-3	chr6	87502941	87503141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-6714.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	185.34	180.6	188.82	183.0	176.73	219.81	156.78	163.99	190.39	242.52	250.74	141.28
Merged-chrX-42068179-3	chrX	42068069	42068269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125870)	promoter-TSS (NR_125870)	-229.0	NM_001301639	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	68.24	62.13	64.46	56.71	57.68	89.68	61.12	44.58	61.76	63.77	92.96	40.41
Merged-chr12-73584726-3	chr12	73584630	73584830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-66.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	50.47	43.51	65.03	40.62	47.46	44.84	30.89	51.25	56.06	49.71	67.84	31.95
Merged-chr2-148522241-3	chr2	148522139	148522339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78704.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	91.26	57.6	118.08	106.99	129.69	105.36	150.14	160.15	141.03	144.61	184.41	83.96
Merged-chr13-46728045-3	chr13	46727924	46728124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-175.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	117.91	102.87	120.37	93.71	98.59	159.92	75.07	88.99	170.53	156.66	152.75	119.67
Merged-chrUn_JH584304-59712-1	chrUn_JH584304	59612	59812	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003518)	promoter-TSS (NR_003518)	-23.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1718.46	1828.17	2033.55	1156.58
Merged-chr9-13701937-3	chr9	13701845	13702045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173776, intron 2 of 3)	intron (NM_173776, intron 2 of 3)	39485.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	28.27	23.64	39.36	41.83	33.96	42.33	32.88	54.56	47.99	23.1	74.87	21.62
Merged-chr11-102407581-3	chr11	102407522	102407722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-105.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	56.94	53.32	52.48	57.11	75.68	82.47	50.16	51.84	79.27	57.24	87.43	49.18
Merged-chr4-148039000-3	chr4	148038892	148039092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	-85.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	207.55	207.51	184.83	180.19	206.19	253.99	176.71	196.71	294.25	372.56	375.86	187.33
Merged-chr2-165969023-3	chr2	165968930	165969130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23607.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	57.34	53.83	62.75	57.51	63.41	101.28	42.19	49.26	76.71	97.91	110.04	54.2
Merged-chr12-116262978-3	chr12	116262873	116263073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146039)	promoter-TSS (NM_146039)	52.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	25.84	29.68	17.11	28.96	39.27	30.1	48.83	54.36	37.37	25.61	48.74	25.69
Merged-chr7-43660157-3	chr7	43660057	43660257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	4.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	29.07	39.49	62.18	32.58	33.14	47.04	35.87	35.16	50.94	60.75	52.76	31.33
Merged-chr19-55570051-3	chr19	55569933	55570133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	132171.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	23.02	25.15	50.2	57.92	48.68	52.68	34.88	46.71	39.93	31.63	35.68	29.76
Merged-chr16-58477765-3	chr16	58477664	58477864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	RMER6C|LTR|ERVK	45662.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	28.27	16.6	35.94	14.48	57.68	73.06	50.16	41.52	84.38	83.85	106.02	48.24
Merged-chr13-54687272-3	chr13	54687179	54687379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027396, intron 1 of 10)	CpG	529.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	18.98	20.88	11.98	20.91	31.09	27.91	16.61	26.5	26.36	30.13	37.18	24.43
Merged-chr1-135753121-3	chr1	135753020	135753220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153810)	TTS (NR_153810)	-12965.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	31.09	37.73	29.66	44.64	37.23	52.99	30.56	42.25	59.6	60.25	93.96	35.4
Merged-chr8-91070735-3	chr8	91070631	91070831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	674.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	29.88	20.63	23.39	30.97	57.68	52.05	26.57	49.01	54.09	41.17	62.31	32.27
Merged-chr4-35157476-3	chr4	35157368	35157568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	16.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	28.27	27.42	25.67	28.15	41.73	39.2	22.26	38.05	41.5	31.13	46.23	22.56
Merged-chr7-104244426-3	chr7	104244330	104244530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357679)	promoter-TSS (NM_001357679)	-27.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	66.22	69.17	45.64	75.61	75.28	74.63	60.46	63.87	92.25	76.82	95.97	46.99
Merged-chr3-95632454-3	chr3	95632370	95632570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019561)	TTS (NM_019561)	7490.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	21.0	20.12	38.79	27.75	26.18	14.74	38.86	23.58	25.96	21.09	27.64	24.75
Merged-chr19-46573254-3	chr19	46573135	46573335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019718)	promoter-TSS (NM_019718)	-53.0	NM_019718	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	148.19	155.44	176.27	142.38	151.37	206.02	126.56	128.27	190.59	230.97	225.11	112.46
Merged-chr14-75024984-3	chr14	75024881	75025081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	8954.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	29.48	27.67	41.64	21.72	23.32	50.49	19.27	20.8	33.83	40.17	22.61	15.04
Merged-chr1-105663809-3	chr1	105663730	105663930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	-31.0	NM_173187	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	121.54	99.86	95.27	112.21	126.0	165.88	92.68	93.84	169.15	190.3	177.38	105.57
Merged-chr9-114640142-3	chr9	114640021	114640221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	79.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	181.3	169.78	189.39	197.48	179.19	252.11	147.48	181.4	272.22	267.12	368.32	183.26
Merged-chr12-32163852-3	chr12	32163730	32163930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44508.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	45.63	58.61	71.31	78.83	67.5	63.66	58.13	79.85	84.77	69.29	130.14	100.56
Merged-chr8-94434298-3	chr8	94434178	94434378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015514, exon 2 of 3)	non-coding (NR_015514, exon 2 of 3)	825.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	19.79	22.64	19.4	22.12	24.14	18.5	19.93	35.36	26.36	23.1	32.16	19.42
Merged-chr16-96127998-3	chr16	96127880	96128080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008251)	promoter-TSS (NM_008251)	-255.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	64.2	54.83	62.75	94.92	63.41	70.55	99.65	70.29	76.31	87.87	93.96	45.11
Merged-chr10-10429250-3	chr10	10429147	10429347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43067.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	30.69	42.51	40.5	49.47	35.18	42.96	29.9	52.57	50.55	55.23	44.22	39.16
Merged-chr12-85524611-3	chr12	85524523	85524723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50733.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	56.13	55.34	65.6	41.43	77.73	109.44	74.07	69.2	105.62	103.43	101.0	47.3
Merged-chr2-19347471-3	chr2	19347361	19347561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126563, intron 1 of 3)	intron (NR_126563, intron 1 of 3)	3144.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	23.02	13.83	29.09	41.83	49.91	61.15	32.88	61.07	40.91	31.13	57.28	29.13
Merged-chr15-6522986-3	chr15	6522882	6523082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56865.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	31.09	25.91	19.4	43.44	38.05	31.36	52.48	22.07	23.21	33.64	29.65	14.41
Merged-chr5-43882286-3	chr5	43882192	43882392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	PB1D10|SINE|Alu	13483.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	95.7	84.76	111.81	112.62	117.41	108.18	116.92	117.17	137.09	111.97	155.77	83.96
Merged-chr17-74294433-1	chr17	74294333	74294533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133771, intron 1 of 8)	CpG	430.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	13.73	22.39	10.84	16.49	20.05	14.11	12.62	11.05	9.44	16.57	11.05	9.08
Merged-chr4-136120210-3	chr4	136120112	136120312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23610.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	16.96	19.12	34.8	24.94	42.55	52.05	36.21	66.93	29.9	30.63	45.22	39.47
Merged-chr8-70629941-3	chr8	70629841	70630041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	2154.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	90.85	76.46	75.87	76.42	72.41	50.8	48.83	52.18	108.38	95.9	66.83	59.83
Merged-chr8-26158125-3	chr8	26158016	26158216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199042)	promoter-TSS (NM_199042)	-53.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	92.47	87.78	87.85	100.95	132.55	147.07	67.76	107.89	144.57	131.05	173.36	71.42
Merged-chr8-77518064-3	chr8	77517912	77518112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-105.0	NM_030113	78514.0	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	25.84	16.1	23.39	40.22	42.96	41.39	16.94	50.86	47.8	43.18	60.3	26.31
Merged-chr1-182409038-3	chr1	182408930	182409130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173378)	promoter-TSS (NM_173378)	-137.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	145.77	129.54	135.77	113.82	139.91	185.01	115.26	151.35	210.06	180.76	257.77	120.29
Merged-chr11-120491822-3	chr11	120491702	120491902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-35.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	29.88	24.4	23.39	22.12	30.27	35.75	22.59	22.96	47.01	50.21	47.23	19.42
Merged-chr4-123904939-3	chr4	123904842	123905042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-71.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	146.17	114.19	158.02	110.2	166.91	137.03	96.66	111.39	164.04	157.16	205.01	97.11
Merged-chr19-34194590-3	chr19	34194491	34194691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	1657.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	41.19	31.94	27.38	26.14	45.0	34.81	30.56	37.01	46.22	38.66	64.32	26.31
Merged-chr9-104002531-3	chr9	104002432	104002632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172460)	promoter-TSS (NM_172460)	-12.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	209.57	244.99	284.66	215.58	269.6	320.47	188.34	234.2	344.4	317.83	403.49	182.95
Merged-chr13-96388257-3	chr13	96388180	96388380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-14.0	NM_026173	67463.0	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	186.55	171.54	148.32	167.32	176.32	225.15	154.79	178.65	167.97	201.34	196.47	145.04
Merged-chr11-110427350-3	chr11	110427257	110427457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	28255.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	56.13	45.28	45.07	65.96	51.55	66.79	22.92	38.44	74.74	66.78	73.36	31.33
Merged-chr5-30889030-3	chr5	30888909	30889109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	3.0	NM_001048192	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	21.4	16.1	12.55	19.71	21.27	14.74	16.94	12.34	13.77	26.61	12.56	10.02
Merged-chr11-108223354-3	chr11	108223281	108223481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	120507.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	46.84	48.29	46.21	51.88	48.27	36.37	33.22	36.56	37.57	28.12	60.3	29.13
Merged-chr15-53346194-3	chr15	53346108	53346308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-25.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	134.06	121.99	103.25	113.82	108.0	137.66	82.38	119.02	121.16	96.91	170.84	67.98
Merged-chr7-114194469-3	chr7	114194374	114194574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	60206.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.25	13.83	16.54	18.5	19.23	17.87	16.94	29.13	32.65	25.61	36.68	23.49
Merged-chr11-49202806-3	chr11	49202689	49202889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-711.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	28.67	38.99	38.22	28.15	29.46	34.81	21.92	18.93	37.96	39.16	29.65	17.23
Merged-chr11-82566274-3	chr11	82566181	82566381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67072.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	30.28	35.47	74.73	65.16	44.18	43.59	34.88	52.51	47.99	58.75	59.8	46.68
Merged-chr15-58076658-3	chr15	58076569	58076769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-161.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	191.4	221.85	244.73	190.64	242.19	296.33	187.68	198.65	319.42	331.89	340.68	174.8
Merged-chr10-14207874-3	chr10	14207787	14207987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241508.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	70.66	70.68	79.29	92.1	78.55	68.36	79.72	91.12	60.38	71.3	84.92	42.6
Merged-chr5-86804186-3	chr5	86804100	86804300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-66.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	147.39	128.78	126.64	147.61	177.14	183.75	136.52	185.75	214.78	177.24	290.43	157.57
Merged-chr15-61999795-3	chr15	61999681	61999881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14440.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	160.31	149.16	176.84	145.6	127.64	174.97	131.21	152.75	127.85	181.76	197.98	108.39
Merged-chr15-101078882-3	chr15	101078743	101078943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-24444.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	50.07	47.04	56.48	38.21	50.73	50.49	39.86	59.5	56.25	42.18	65.83	38.22
Merged-chr3-59312771-3	chr3	59312668	59312868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	31488.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	23.82	22.89	29.09	23.33	84.28	34.18	45.18	70.29	46.22	43.18	41.2	31.95
Merged-chr1-184033740-3	chr1	184033629	184033829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022019)	promoter-TSS (NM_022019)	269.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	33.52	41.25	40.5	41.83	27.82	43.59	46.84	44.19	40.91	38.16	40.7	36.97
Merged-chr8-34158396-3	chr8	34158310	34158510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	3847.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	50.07	32.7	71.88	57.92	60.96	59.27	61.45	66.98	59.99	52.72	67.84	49.81
Merged-chr5-63967752-3	chr5	63967665	63967865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1132.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	20.59	10.56	17.68	20.11	23.32	15.99	13.62	23.13	28.91	21.59	27.64	22.56
Merged-chr8-126805982-3	chr8	126805856	126806056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43064.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	80.76	66.65	94.7	56.71	101.87	129.51	101.64	75.67	97.36	99.42	107.53	26.63
Merged-chr19-46152395-3	chr19	46152297	46152497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-161.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	182.52	187.14	220.2	236.49	219.69	288.49	172.06	225.0	197.47	179.75	169.84	121.86
Merged-chr7-45526295-3	chr7	45526198	45526398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	-30.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	202.3	194.93	162.01	153.64	155.05	234.87	158.78	130.6	217.14	273.15	262.3	135.02
Merged-chr7-47050577-3	chr7	47050482	47050682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-58.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	141.33	131.8	134.06	131.92	149.32	183.75	121.57	153.65	176.04	201.34	266.82	103.69
Merged-chr3-137950645-3	chr3	137950542	137950742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	30907.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	24.23	19.37	30.8	30.16	20.05	36.06	36.87	28.82	28.72	29.62	43.21	22.87
Merged-chr17-57342463-4	chr17	57342346	57342546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16240.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	12.11	13.83	11.41	14.48	16.77	15.99	16.28	16.37	21.83	25.11	17.08	13.78
Merged-chr9-124312643-3	chr9	124312544	124312744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243117)	promoter-TSS (NM_001243117)	50.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	83.18	94.57	87.28	102.56	78.96	107.56	56.47	92.66	91.66	90.88	111.55	48.87
Merged-chr16-31926795-3	chr16	31926707	31926907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-7044.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	165.15	164.0	126.07	83.66	100.64	228.28	121.91	53.19	158.33	166.7	136.17	76.44
Merged-chr9-85587317-3	chr9	85587239	85587439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161995.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	42.8	33.2	26.24	23.73	54.82	66.79	50.82	37.23	57.63	57.74	70.85	23.81
Merged-chr4-125055439-4	chr4	125055279	125055479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145552)	TTS (NM_145552)	10278.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	18.98	17.1	23.39	20.11	22.91	19.13	15.61	22.82	38.16	59.25	44.22	27.57
Merged-chr16-13903118-3	chr16	13903043	13903243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	2.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	134.06	114.7	142.04	117.04	134.6	123.23	82.05	144.95	197.67	191.8	227.62	98.68
Merged-chr2-5824872-3	chr2	5824763	5824963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356504, intron 3 of 6)	intron (NM_001356504, intron 3 of 6)	-20171.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	44.01	44.02	70.17	52.29	27.41	38.26	21.92	41.69	37.76	39.16	40.2	36.34
Merged-chr10-85353088-1	chr10	85352988	85353188	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-33726.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	78.87	45.69	112.05	51.69
Merged-chr2-122572674-3	chr2	122572569	122572769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38608.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	139.31	133.81	135.77	192.65	105.14	183.75	181.03	179.41	129.22	160.17	159.29	126.87
Merged-chr15-50820376-3	chr15	50820283	50820483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	68666.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	46.03	46.28	53.62	49.07	62.59	70.55	40.86	78.14	73.76	53.73	88.44	30.07
Merged-chr4-120951730-3	chr4	120951624	120951824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-23.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	136.08	88.29	110.1	94.92	107.59	113.83	74.07	95.66	127.85	118.5	166.32	89.28
Merged-chr10-95146764-3	chr10	95146666	95146866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131146)	promoter-TSS (NR_131146)	-941.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	18.17	22.13	42.78	30.16	24.96	31.04	19.6	34.15	37.57	29.62	39.19	27.25
Merged-chr9-110676813-3	chr9	110676707	110676907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	20304.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	152.63	146.64	192.81	186.22	154.23	181.56	153.46	169.29	136.7	154.15	176.37	111.52
Merged-chr4-3391903-2	chr4	3391801	3392001	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-145189.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	1.62	0.0	0.0	1.21	29.46	32.3	19.27	10.63	80.45	43.18	68.84	44.48
Merged-chr19-53600083-3	chr19	53600059	53600259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-237.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	89.24	119.73	93.55	121.87	143.6	171.52	102.64	103.74	158.14	211.39	199.99	115.28
Merged-chr1-134361979-3	chr1	134361878	134362078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	21.0	NM_020588	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	85.6	72.94	73.59	76.82	102.28	96.27	46.84	77.05	97.95	120.51	129.64	64.22
Merged-chr16-91916777-3	chr16	91916684	91916884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14846.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	29.88	10.56	18.83	14.88	24.96	28.54	16.94	26.02	31.08	15.06	23.62	9.08
Merged-chr2-156144217-3	chr2	156144119	156144319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164216)	promoter-TSS (NM_001164216)	-14.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	35.53	31.19	29.09	31.77	29.86	41.71	15.94	28.37	39.73	44.19	46.73	26.94
Merged-chr9-106437862-3	chr9	106437752	106437952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025371, intron 1 of 14)	intron (NM_025371, intron 1 of 14)	384.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	27.86	20.12	22.25	18.1	33.55	37.0	20.93	29.92	31.86	30.63	30.15	10.34
Merged-chr7-80192482-3	chr7	80192387	80192587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	5646.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	44.42	43.51	41.64	57.11	35.18	52.68	43.51	27.62	30.49	31.63	31.66	25.06
Merged-chr11-23699915-3	chr11	23699804	23700004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	33928.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	33.11	23.39	25.67	16.49	22.5	31.36	19.6	31.29	36.19	12.55	39.7	22.24
Merged-chr10-52382140-3	chr10	52382046	52382246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-22.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	195.44	164.5	180.83	174.55	207.42	243.02	192.33	251.78	270.25	194.82	335.66	142.54
Merged-chr2-22781636-3	chr2	22781534	22781734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	L1_Mus4|LINE|L1	7307.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	25.04	26.41	14.26	8.45	20.05	41.39	15.94	3.06	46.22	46.19	27.64	4.7
Merged-chr2-167949390-3	chr2	167949292	167949492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17065.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	41.19	29.68	31.38	55.91	47.46	45.78	77.73	82.99	39.73	27.11	41.71	35.09
Merged-chr1-184444370-3	chr1	184444224	184444424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113367.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	28.27	13.08	43.35	38.61	25.77	19.13	17.94	39.0	12.98	17.07	26.13	15.98
Merged-chr5-124032282-3	chr5	124032138	124032338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177876)	promoter-TSS (NM_177876)	22.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	54.51	58.35	40.5	43.04	38.46	45.47	24.25	42.7	67.66	75.82	55.27	36.03
Merged-chr7-16297020-3	chr7	16296928	16297128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10233.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	44.01	36.97	33.66	36.6	46.23	55.5	31.89	33.31	92.84	107.45	93.46	51.38
Merged-chr11-26805090-3	chr11	26804988	26805188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19980.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	23.02	31.94	43.35	37.4	42.14	28.54	21.92	42.2	47.8	61.76	37.69	22.24
Merged-chr2-119156980-3	chr2	119156886	119157086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033136)	promoter-TSS (NM_001033136)	48.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	60.97	38.99	46.78	34.19	42.96	39.2	18.27	35.07	83.99	50.71	41.71	55.45
Merged-chr16-95708837-3	chr16	95708747	95708947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	6440.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	64.61	56.34	91.27	55.5	108.82	132.33	117.92	104.52	116.24	132.56	131.15	54.51
Merged-chr15-31410204-2	chr15	31410101	31410301	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42442.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	1.62	1.01	1.71	2.82	58.09	64.28	48.5	56.78	50.35	43.18	54.77	37.28
Merged-chr15-5349096-3	chr15	5349003	5349203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104916.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	44.42	26.91	26.81	31.37	32.73	47.04	27.57	34.99	35.99	34.14	42.71	18.17
Merged-chr5-138754945-3	chr5	138754820	138755020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-161.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	21.4	19.62	7.42	21.32	60.14	52.99	46.17	49.65	34.22	33.14	58.29	19.74
Merged-chr1-30949228-3	chr1	30949134	30949334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011200, intron 1 of 5)	CpG	476.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	60.97	68.16	49.63	82.85	63.82	52.37	82.38	60.53	73.17	70.8	93.96	62.97
Merged-chr4-47314133-3	chr4	47314044	47314244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009928)	TTS (NM_009928)	-39078.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	88.03	117.46	105.53	76.42	71.18	111.32	60.46	65.66	118.41	97.91	94.47	42.6
Merged-chr2-122611806-3	chr2	122611701	122611901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	-524.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	67.03	56.59	55.9	73.2	56.46	63.34	44.51	56.13	60.19	47.7	75.87	28.82
Merged-chr8-128694681-3	chr8	128694601	128694801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010578, intron 1 of 15)	MTC|LTR|ERVL-MaLR	9047.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	25.04	28.67	32.52	40.22	20.86	22.58	25.58	29.16	39.34	25.61	42.21	22.24
Merged-chrX-47918271-3	chrX	47918182	47918382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177215, intron 3 of 23)	intron (NM_177215, intron 3 of 23)	5826.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	62.99	51.56	39.36	57.51	64.23	56.76	60.79	67.37	51.53	82.85	63.82	61.09
Merged-chr10-40276113-3	chr10	40276015	40276215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18403.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	35.94	31.69	35.37	70.79	42.14	60.52	50.82	74.19	31.08	31.13	51.25	32.58
Merged-chr6-83040760-3	chr6	83040651	83040851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	6527.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	15.34	12.32	37.08	17.29	19.64	16.62	30.56	27.81	31.47	22.09	43.21	26.31
Merged-chr6-84583573-3	chr6	84583466	84583666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10244.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	42.4	59.61	46.21	51.88	62.18	73.38	41.85	51.9	60.78	51.21	62.81	23.81
Merged-chr8-26697480-1	chr8	26697380	26697580	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126943.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	14.94	12.58	13.69	17.29	14.32	18.5	17.61	15.95	45.83	30.63	43.21	34.77
Merged-chr10-77962848-3	chr10	77962727	77962927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	7045.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	29.07	32.45	34.23	30.16	58.91	47.98	27.57	36.84	48.58	42.18	35.68	23.81
Merged-chr8-61591169-3	chr8	61591064	61591264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	5.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	29.48	53.83	39.36	36.6	53.59	58.64	77.06	69.67	45.04	50.21	33.16	34.77
Merged-chr11-102467246-3	chr11	102467147	102467347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010575, intron 4 of 29)	CpG	2636.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	65.41	55.34	59.9	57.11	67.91	78.39	52.15	66.25	81.63	57.24	86.93	35.71
Merged-chr7-128089343-3	chr7	128089226	128089426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 12 of 29)	L1M2|LINE|L1	26686.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	41.99	29.18	47.35	32.98	42.96	40.76	24.58	31.18	45.04	34.65	61.81	29.13
Merged-chr17-65768658-3	chr17	65768548	65768748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	4104.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	101.35	71.69	109.53	117.84	130.09	59.27	89.02	100.49	103.46	97.41	100.5	74.87
Merged-chr10-39960287-3	chr10	39960193	39960393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173500)	promoter-TSS (NM_001173500)	-140.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	135.68	99.86	92.41	119.05	106.78	131.7	80.39	101.66	156.96	113.98	157.78	83.64
Merged-chr13-88828500-3	chr13	88828410	88828610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037987, intron 1 of 10)	intron (NM_001037987, intron 1 of 10)	7038.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	74.7	50.81	134.63	111.81	24.55	30.42	64.44	60.11	116.44	90.38	199.99	76.44
Merged-chr6-87850524-3	chr6	87850408	87850608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355195, intron 1 of 4)	CpG	598.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	12.92	16.1	7.99	18.9	15.14	18.81	23.92	13.12	18.88	28.12	29.65	23.81
Merged-chr19-45075154-3	chr19	45075035	45075235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-106.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	49.26	58.1	44.5	40.62	42.96	50.49	27.9	30.53	47.4	33.64	56.78	20.99
Merged-chr10-80406780-3	chr10	80406669	80406869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025650)	promoter-TSS (NM_025650)	52.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	27.05	34.96	21.68	33.78	44.59	47.35	36.54	22.91	38.94	34.65	44.22	23.49
Merged-chr1-163994792-3	chr1	163994692	163994892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201364)	promoter-TSS (NM_201364)	4.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	54.51	54.58	67.31	69.58	61.37	78.08	69.42	88.77	77.89	60.25	103.01	58.89
Merged-chr12-32008891-1	chr12	32008791	32008991	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	B1_Mur2|SINE|Alu	52388.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.81	0.0	0.0	1.61	2.05	0.94	1.33	0.06	18.1	16.57	21.61	3.76
Merged-chr15-41830865-3	chr15	41830765	41830965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-93.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	86.41	99.86	77.01	139.16	120.69	137.66	125.56	183.39	147.91	120.0	199.49	74.87
Merged-chr19-4397265-3	chr19	4397172	4397372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-195.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	173.63	164.75	191.67	179.38	190.23	221.07	163.1	143.64	212.42	242.01	230.64	130.01
Merged-chr9-64960846-3	chr9	64960750	64960950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	18.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	50.47	54.58	53.05	49.87	38.86	55.19	25.58	34.63	72.77	71.8	84.92	41.98
Merged-chrX-17572342-3	chrX	17572248	17572448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028058)	promoter-TSS (NM_028058)	-23.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	68.65	62.88	42.78	63.55	78.14	92.82	49.16	78.87	93.62	84.35	137.18	41.66
Merged-chr2-69723026-4	chr2	69722885	69723085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-103.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	18.98	45.28	42.21	42.23	49.91	35.12	52.48	39.48	36.98	59.75	47.74	21.3
Merged-chr6-136687647-2	chr6	136687548	136687748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25755.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	15.75	13.58	33.66	25.34	18.0	18.5	11.63	16.09	0.0	1.0	1.0	0.31
Merged-chr14-34768576-3	chr14	34768469	34768669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-51567.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	21.4	27.17	28.52	32.98	54.0	71.49	38.53	43.4	33.63	41.67	54.77	20.99
Merged-chr5-102046853-3	chr5	102046750	102046950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23071.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	31.5	18.11	37.08	19.71	22.5	31.98	41.19	53.47	25.77	22.59	60.3	24.75
Merged-chr13-119836671-3	chr13	119836562	119836762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6445.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	40.78	54.08	45.07	60.73	58.5	48.29	22.26	31.57	66.48	66.78	66.83	28.82
Merged-chr4-148583510-2	chr4	148583410	148583610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8003.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	19.38	26.16	38.79	50.68	38.05	47.04	24.58	47.13	2.36	4.52	1.51	1.88
Merged-chr3-59219533-3	chr3	59219423	59219623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357010, intron 3 of 3)	intron (NM_001357010, intron 3 of 3)	-8641.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	17.36	21.13	15.97	19.31	25.77	46.1	19.27	27.64	33.83	49.71	25.12	15.66
Merged-chr4-132959674-3	chr4	132959550	132959750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14445.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	65.41	38.74	75.3	52.29	81.0	84.66	57.8	62.55	97.75	94.9	101.0	53.88
Merged-chr6-47835668-3	chr6	47835556	47835756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027477)	promoter-TSS (NM_027477)	-5.0	NM_027477	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	42.8	57.6	59.33	74.41	51.14	53.31	36.87	78.56	65.69	53.73	79.39	50.44
Merged-chr2-78050789-1	chr2	78050689	78050889	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_108098)	promoter-TSS (NR_108098)	-388.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	6.46	7.29	2.28	9.25	3.27	8.15	4.32	11.02	3.15	3.01	6.53	6.58
Merged-chr9-55512261-3	chr9	55512165	55512365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145615)	promoter-TSS (NM_145615)	-22.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	100.14	91.56	65.03	61.54	129.28	157.73	82.05	113.5	136.89	155.15	160.79	86.46
Merged-chr1-131068378-3	chr1	131068273	131068473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	MTC|LTR|ERVL-MaLR	29470.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	61.78	66.15	39.36	63.95	56.87	72.12	42.85	51.06	56.25	58.75	53.77	37.28
Merged-chr5-33996588-1	chr5	33996488	33996688	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001001985, exon 1 of 3)	5' UTR (NM_001001985, exon 1 of 3)	604.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	6.06	4.02	7.99	7.24	20.46	21.95	16.94	26.69	6.69	3.51	7.03	5.64
Merged-chr11-87987602-3	chr11	87987519	87987719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026556)	promoter-TSS (NM_026556)	-86.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	76.32	86.53	60.47	86.07	90.82	79.33	45.51	55.35	63.53	40.67	70.85	36.03
Merged-chr8-4250776-3	chr8	4250672	4250872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195258, intron 5 of 6)	intron (NM_001195258, intron 5 of 6)	-2330.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	15.75	20.88	19.97	22.52	35.18	31.36	16.94	23.75	33.24	34.65	45.22	13.47
Merged-chr11-21034143-3	chr11	21034058	21034258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57166.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	98.53	128.53	35.94	19.71	73.23	183.75	40.19	25.04	100.11	130.55	56.28	16.92
Merged-chr4-43493431-3	chr4	43493331	43493531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	66.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	43.61	46.28	25.67	30.16	65.87	51.74	38.86	33.95	40.12	45.69	36.68	32.89
Merged-chr14-57890386-3	chr14	57890287	57890487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-51.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	155.46	163.74	155.16	174.55	197.19	213.54	140.51	150.48	168.76	236.99	292.95	120.92
Merged-chr11-3914290-3	chr11	3914173	3914373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	391.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	25.44	23.64	19.97	15.69	40.91	36.69	28.9	33.17	26.55	32.64	46.73	18.8
Merged-chr10-78149293-3	chr10	78149194	78149394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	20474.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	67.43	75.71	57.05	63.95	76.91	91.56	43.85	61.37	84.58	87.87	80.4	51.38
Merged-chr2-119288646-3	chr2	119288544	119288744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172269)	promoter-TSS (NM_172269)	-98.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	96.91	107.65	123.79	115.43	98.59	157.41	106.96	116.58	142.6	122.01	145.22	91.79
Merged-chr12-33125756-3	chr12	33125661	33125861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 4 of 5)	MLT1J|LTR|ERVL-MaLR	21825.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	52.09	41.5	53.62	49.07	77.73	64.91	46.84	61.29	58.22	40.17	70.35	52.63
Merged-chr17-35919121-3	chr17	35919053	35919253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-119.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	41.99	51.56	39.93	43.84	51.14	73.06	19.6	40.43	85.36	54.73	72.36	46.99
Merged-chrX-77433616-3	chrX	77433523	77433723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-77604.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	57.74	46.03	75.3	25.34	81.82	62.4	51.49	63.73	68.84	74.31	65.83	40.1
Merged-chr18-80470039-3	chr18	80469941	80470141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-374.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	170.0	141.86	128.35	129.91	185.32	222.64	130.88	173.38	209.47	226.45	255.26	111.21
Merged-chr8-3392971-3	chr8	3392876	3393076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133962)	promoter-TSS (NM_133962)	-32.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	29.48	19.87	32.52	28.56	50.32	47.35	23.25	46.57	52.32	47.2	52.76	29.76
Merged-chr13-48976498-3	chr13	48976397	48976597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8385.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	33.11	32.2	28.52	24.53	28.23	46.72	19.93	35.38	46.62	39.67	39.19	39.47
Merged-chr5-16467306-3	chr5	16467212	16467412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-86183.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	45.63	28.17	69.03	52.69	81.0	42.96	85.7	136.85	67.66	65.78	103.51	60.77
Merged-chr2-129261331-3	chr2	129261220	129261420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35892.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	41.99	26.16	30.8	28.15	35.18	37.0	16.61	33.06	28.72	40.17	36.18	24.75
Merged-chr10-4080046-3	chr10	4079961	4080161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106986.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	25.84	17.36	31.95	20.11	31.5	34.81	29.9	49.57	31.86	29.62	38.69	17.23
Merged-chr15-89177793-3	chr15	89177697	89177897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2991.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	87.62	89.04	112.38	92.51	106.78	113.2	67.1	98.38	141.81	129.54	167.33	123.11
Merged-chr3-105801336-3	chr3	105801253	105801453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	28.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	36.75	37.98	47.92	30.16	36.0	36.06	32.22	37.04	76.91	46.19	76.38	40.41
Merged-chr10-80539199-3	chr10	80539099	80539299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-75.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	20.59	19.37	18.25	19.31	26.18	44.84	21.26	21.76	36.98	28.62	45.22	22.24
Merged-chr17-84647862-3	chr17	84647754	84647954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21355.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	43.61	43.51	79.86	90.49	78.14	86.23	53.15	88.32	104.83	99.92	117.58	60.46
Merged-chr13-113379103-3	chr13	113379008	113379208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123736.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	21.4	16.35	26.24	26.14	62.18	49.86	73.74	82.32	57.24	64.77	74.37	51.06
Merged-chr11-96789202-3	chr11	96789131	96789331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007622)	promoter-TSS (NM_007622)	95.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	54.51	60.12	41.07	61.94	54.82	56.44	50.49	40.43	32.45	58.75	54.77	36.03
Merged-chr7-133124284-3	chr7	133124208	133124408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009980)	promoter-TSS (NM_009980)	-825.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	103.37	105.14	108.39	102.96	83.87	121.35	77.73	80.05	153.61	128.54	196.97	78.94
Merged-chr9-40760566-3	chr9	40760490	40760690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-40683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	39.17	41.75	40.5	70.79	89.59	80.27	63.78	74.3	24.39	17.07	36.68	24.75
Merged-chr15-84325948-3	chr15	84325796	84325996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	-223.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	25.04	27.17	20.54	20.11	36.82	32.93	42.52	26.16	33.83	35.15	29.14	28.19
Merged-chr1-153487710-3	chr1	153487605	153487805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-45.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	75.51	65.65	45.07	42.23	69.96	102.54	29.23	56.36	110.15	71.8	93.46	43.23
Merged-chr6-136656442-3	chr6	136656345	136656545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5448.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	54.51	39.49	51.91	47.86	30.68	43.9	28.57	54.67	21.24	28.12	27.13	9.4
Merged-chr14-79481126-4	chr14	79481014	79481214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-80.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	52.9	53.58	30.8	47.86	69.14	85.92	34.21	52.96	71.4	98.41	62.81	45.11
Merged-chr11-62551648-3	chr11	62551533	62551733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313984)	promoter-TSS (NM_001313984)	-98.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	180.5	206.25	94.13	115.43	135.41	208.21	67.43	65.38	142.21	170.21	123.61	62.34
Merged-chr19-40963193-3	chr19	40963100	40963300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008528, intron 4 of 16)	intron (NM_008528, intron 4 of 16)	31335.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	50.07	44.02	65.6	56.31	82.23	82.16	45.18	86.8	61.17	38.66	53.26	33.21
Merged-chr13-52636393-3	chr13	52636320	52636520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	39538.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	90.45	74.96	98.69	60.33	138.28	104.73	82.38	78.34	99.92	122.01	113.06	58.27
Merged-chr9-106887215-3	chr9	106887122	106887322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-222.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	180.09	169.28	128.35	146.4	166.1	204.45	96.33	139.51	202.39	212.89	228.13	112.46
Merged-chr9-44881398-3	chr9	44881270	44881470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-96.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	77.93	58.61	73.59	55.1	60.96	94.07	50.82	56.27	118.01	107.95	83.91	54.2
Merged-chr6-113531604-3	chr6	113531480	113531680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175101)	promoter-TSS (NM_175101)	58.0	NM_175101	66087.0	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	28.67	29.93	27.95	30.16	24.14	30.1	18.93	22.21	35.99	27.11	19.6	13.78
Merged-chr1-128417009-2	chr1	128416913	128417113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145507, intron 1 of 3)	CpG	403.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	18.57	28.17	18.83	24.53	28.23	31.36	36.21	29.27	19.67	26.11	35.17	28.51
Merged-chr17-34282592-1	chr17	34282492	34282692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_010378)	TTS (NM_010378)	5179.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	3.63	15.59	16.54	8.45	0.41	6.59	0.0	0.25	12.39	1.51	0.0	6.89
Merged-chr8-12672141-3	chr8	12672036	12672236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-36.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	54.11	49.55	53.05	54.7	65.05	73.38	48.5	88.49	78.68	84.35	92.46	60.46
Merged-chr4-118366435-1	chr4	118366335	118366535	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198170, intron 65 of 71)	intron (NM_198170, intron 65 of 71)	6436.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	5.25	2.52	3.42	3.62	20.05	38.57	26.57	17.07	2.75	1.0	2.51	1.88
Merged-chrX-20617715-3	chrX	20617608	20617808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358624)	promoter-TSS (NM_001358624)	-89.0	NM_001358624	104130.0	Mm.30084	NM_019435	ENSMUSG00000031059	Ndufb11	CI-ESSS|D5Bwg0566e|D5Bwg0577e|NP15.6|Np15|p15.6	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	protein-coding	50.07	56.85	77.01	63.55	98.59	64.28	65.77	36.08	68.25	86.36	90.45	52.0
Merged-chr6-127109608-3	chr6	127109493	127109693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177003)	promoter-TSS (NM_177003)	-41.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	77.93	52.82	54.19	62.74	87.55	102.85	61.45	76.77	85.17	73.31	101.5	34.77
Merged-chr6-146675302-3	chr6	146675205	146675405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18087.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	180.5	163.49	151.74	275.91	150.55	201.94	194.98	211.37	285.59	255.07	308.02	230.88
Merged-chr3-65529469-3	chr3	65529311	65529511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027955)	promoter-TSS (NR_027955)	3.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	79.95	67.41	91.84	94.11	85.09	89.05	102.97	123.48	114.47	96.91	129.14	89.91
Merged-chr8-84977708-4	chr8	84977594	84977794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	1054.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	141.73	174.06	148.89	123.07	138.69	205.39	120.58	74.5	179.18	198.83	208.03	92.41
Merged-chr12-111182080-3	chr12	111181984	111182184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130987, intron 1 of 3)	intron (NR_130987, intron 1 of 3)	2407.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	20.59	29.68	30.23	23.73	13.5	47.04	11.96	17.05	60.97	31.13	51.76	17.86
Merged-chr12-8547454-3	chr12	8547341	8547541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177802, intron 2 of 6)	intron (NM_177802, intron 2 of 6)	-7875.0	NM_001286385	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	51.28	46.78	33.09	59.93	83.46	81.22	63.78	71.78	39.73	30.13	62.31	36.65
Merged-chr17-24007650-3	chr17	24007577	24007777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9577.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	105.79	72.19	115.23	72.8	128.46	150.83	118.25	127.79	144.96	158.16	195.97	90.53
Merged-chr7-16254478-3	chr7	16254367	16254567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4871.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	144.96	131.8	158.02	154.04	140.32	187.2	188.67	167.86	158.14	150.63	187.43	89.28
Merged-chr9-99090670-3	chr9	99090595	99090795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 6 of 23)	RSINE1|SINE|B4	49516.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	21.4	21.38	34.23	26.55	60.14	56.44	43.18	53.1	64.71	58.75	53.77	46.05
Merged-chr6-120473638-3	chr6	120473539	120473739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 3 of 12)	intron (NM_008359, intron 3 of 12)	10442.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	64.61	46.28	50.2	53.09	103.5	132.95	102.31	139.09	85.95	72.3	84.42	58.58
Merged-chr16-31938974-3	chr16	31938855	31939055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	5104.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	28.27	18.86	43.35	34.19	40.5	38.57	26.57	37.79	46.62	43.18	67.84	33.52
Merged-chr1-180256331-3	chr1	180256241	180256441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128605)	promoter-TSS (NM_001128605)	-41.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	106.6	73.19	84.43	84.86	116.19	107.56	64.11	106.23	131.39	99.92	182.9	86.15
Merged-chr10-80149535-3	chr10	80149419	80149619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	-163.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	122.75	121.74	166.0	139.97	142.78	170.27	132.87	148.6	219.11	210.38	283.9	154.75
Merged-chr3-15285095-3	chr3	15285060	15285260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47142.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	33.11	38.48	82.72	77.22	90.82	104.73	60.79	109.18	81.43	86.36	163.31	66.73
Merged-chr9-110732797-3	chr9	110732689	110732889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083936, intron 1 of 13)	GC_rich|Low_complexity|Low_complexity	9821.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	90.45	80.49	107.82	120.26	91.64	92.82	78.39	120.0	98.74	104.44	138.69	74.24
Merged-chr1-59684961-3	chr1	59684869	59685069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-37.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	73.49	60.12	63.32	55.91	55.23	84.35	39.53	56.75	83.79	103.43	83.91	53.88
Merged-chr17-84100798-3	chr17	84100692	84100892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22132.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	43.61	24.9	38.79	28.96	36.41	33.87	28.23	42.11	41.7	49.21	63.82	26.63
Merged-chr2-27311813-3	chr2	27311720	27311920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	MIR3|SINE|MIR	-64517.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	57.34	32.95	45.07	41.83	74.87	64.28	29.23	54.25	62.15	63.77	89.94	42.29
Merged-chr12-16591701-3	chr12	16591588	16591788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	-1918.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	111.85	98.6	88.99	77.62	139.1	166.51	105.3	129.31	67.66	64.77	58.29	27.57
Merged-chr4-140964846-3	chr4	140964752	140964952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 1 of 7)	B4A|SINE|B4	3581.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	43.61	42.51	25.67	28.96	40.09	43.9	23.58	35.72	49.76	37.16	51.76	29.76
Merged-chr12-3856241-3	chr12	3856124	3856324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6020.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	60.97	33.45	77.01	64.75	76.09	70.87	90.35	105.81	41.11	60.75	55.27	41.04
Merged-chr4-63401813-3	chr4	63401716	63401916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1629.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	61.38	53.32	99.26	76.82	76.09	84.66	78.72	86.55	79.07	84.86	94.47	54.82
Merged-chr15-81400081-3	chr15	81399980	81400180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-58.0	NM_177310	321003.0	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	41.59	26.41	40.5	39.42	51.14	53.93	26.24	41.3	67.66	76.32	46.73	43.54
Merged-chr17-87984645-3	chr17	87984553	87984753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9603.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	27.05	13.33	29.66	22.93	36.82	32.93	32.88	45.76	35.21	39.67	57.28	20.68
Merged-chrX-60404869-3	chrX	60404769	60404969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001798)	promoter-TSS (NM_001001798)	-864.0	NM_001037863	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	90.85	91.05	93.55	137.55	95.73	116.02	82.71	134.97	127.45	112.47	170.84	71.74
Merged-chr18-4920529-3	chr18	4920421	4920621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	108035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	21.8	17.86	30.23	19.71	35.59	21.64	16.28	28.49	25.18	24.1	39.19	28.82
Merged-chr1-171044702-3	chr1	171044655	171044855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14639.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	19.38	15.85	23.39	13.27	18.0	22.58	15.94	22.37	33.63	30.13	39.7	26.63
Merged-chr5-134582711-3	chr5	134582616	134582816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020022)	promoter-TSS (NM_020022)	26.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	76.32	55.34	58.19	36.6	67.5	77.45	37.87	52.18	100.9	65.78	73.86	42.92
Merged-chr1-121462118-3	chr1	121462015	121462215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 9 of 23)	intron (NM_029955, intron 9 of 23)	31048.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	97.31	81.24	119.8	108.59	30.27	32.93	31.56	44.86	40.91	30.63	23.11	22.24
Merged-chr17-34341143-3	chr17	34341023	34341223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033978, exon 5 of 5)	3' UTR (NM_001033978, exon 5 of 5)	3522.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	50.88	39.24	38.79	28.96	55.23	44.53	30.89	43.77	59.99	46.7	69.85	41.66
Merged-chr1-57377620-3	chr1	57377556	57377756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	36.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	75.51	87.03	109.53	86.88	104.73	98.46	79.39	107.75	94.21	94.9	120.09	63.91
Merged-chr2-165332818-3	chr2	165332700	165332900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6321.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	27.05	23.14	39.93	38.61	30.68	44.21	38.2	44.19	34.81	32.13	40.7	31.95
Merged-chr9-124312244-1	chr9	124312144	124312344	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243117, intron 1 of 4)	intron (NM_001243117, intron 1 of 4)	450.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	22.61	22.64	34.23	25.74	38.05	31.98	21.92	21.11	45.63	36.65	41.2	26.63
Merged-chr5-113592020-3	chr5	113591924	113592124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41604.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	34.73	38.23	60.47	29.36	49.5	84.98	44.18	68.08	99.92	114.98	93.46	50.44
Merged-chr3-116638144-3	chr3	116638041	116638241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23554.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	23.42	23.39	37.08	20.11	45.82	42.33	38.86	46.71	41.5	27.11	35.17	23.18
Merged-chr10-81545303-3	chr10	81545191	81545391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-245.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	290.33	229.65	238.45	255.4	284.33	367.19	197.97	204.7	313.13	363.02	357.27	205.5
Merged-chrX-7899169-5	chrX	7899081	7899281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313693)	promoter-TSS (NM_001313693)	88.0	NM_001252529	54633.0	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	15.75	31.19	28.52	35.39	20.86	39.2	40.19	17.38	39.14	27.11	44.22	26.63
Merged-chr10-22306646-3	chr10	22306565	22306765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-55.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	120.73	107.4	113.52	107.79	143.19	199.43	74.74	109.23	61.17	76.82	68.84	34.77
Merged-chr6-137735085-3	chr6	137734973	137735173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-9.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	184.13	180.35	175.13	192.25	157.1	184.07	165.09	197.36	284.21	304.28	340.68	174.18
Merged-chr7-92561338-6	chr7	92561237	92561437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001162918, exon 1 of 8)	5' UTR (NM_001162918, exon 1 of 8)	188.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	38.36	41.75	41.64	55.91	37.23	43.9	78.39	42.25	45.63	47.7	64.32	34.46
Merged-chr2-128396158-3	chr2	128396038	128396238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33213.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	32.3	28.17	34.23	28.56	45.41	45.47	27.9	27.17	56.45	37.16	53.26	44.48
Merged-chr17-47395673-4	chr17	47395504	47395704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008189, exon 2 of 4)	exon (NM_008189, exon 2 of 4)	5002.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	30.28	50.31	42.21	35.8	21.27	16.93	9.63	11.66	45.43	53.73	49.75	41.04
Merged-chr10-3973112-3	chr10	3973016	3973216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	41.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	70.66	58.1	51.34	58.72	58.09	95.01	52.82	69.28	49.57	61.76	91.45	39.78
Merged-chrX-20962076-3	chrX	20961982	20962182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013840)	promoter-TSS (NM_013840)	-32.0	NR_027446	320742.0	Mm.391227	NR_027445		A230072C01Rik	-	RIKEN cDNA A230072C01 gene	ncRNA	54.92	37.98	38.79	37.4	48.27	53.31	25.58	34.71	50.16	48.7	56.28	34.15
Merged-chr16-30416076-3	chr16	30415961	30416161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27531.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	49.67	34.46	37.65	20.51	42.55	56.44	36.87	34.77	57.83	51.72	38.19	20.68
Merged-chr13-110541879-3	chr13	110541785	110541985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	146841.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	31.9	20.63	32.52	30.97	29.86	51.74	35.21	41.13	46.03	64.77	44.72	24.75
Merged-chr4-53714160-3	chr4	53714043	53714243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139309)	promoter-TSS (NM_139309)	-39.0	NM_139309	246179.0	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	51.28	53.58	53.05	43.04	56.87	64.6	41.19	56.16	57.43	70.8	80.4	47.93
Merged-chr12-102368251-3	chr12	102368144	102368344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71569.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	63.8	30.18	64.46	40.62	56.05	68.36	80.72	84.0	72.97	64.77	101.0	52.63
Merged-chr4-155847391-3	chr4	155847232	155847432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	-70.0	NM_010091	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	96.1	91.56	104.39	89.29	91.64	123.86	81.71	91.74	100.7	111.97	83.91	75.18
Merged-chr17-62649799-2	chr17	62649697	62649897	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	231520.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	8.08	5.03	2.28	12.07	4.5	3.45	16.61	14.97	14.36	4.52	21.1	11.9
Merged-chr7-122289072-3	chr7	122288950	122289150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008855)	promoter-TSS (NM_008855)	-75.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	31.5	26.41	27.95	29.76	43.36	31.67	20.59	35.07	39.14	33.64	51.25	27.25
Merged-chr11-6415810-3	chr11	6415727	6415927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-43.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	135.27	192.67	122.08	124.28	117.41	199.75	92.68	75.0	210.26	251.05	245.21	106.51
Merged-chr8-79225775-3	chr8	79225687	79225887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026315, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	22796.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	31.09	34.46	59.9	49.47	40.91	39.82	54.14	87.67	44.84	51.72	77.88	39.16
Merged-chr4-128666590-3	chr4	128666482	128666682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11880.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	110.24	80.74	75.87	48.26	78.14	122.92	57.8	40.26	81.63	95.9	82.91	46.99
Merged-chr2-59177503-3	chr2	59177395	59177595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	16645.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	8.08	3.52	16.54	16.49	20.05	15.05	19.6	29.61	31.86	27.11	36.18	13.47
Merged-chr9-118706355-3	chr9	118706245	118706445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-5347.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	46.84	22.39	49.06	52.69	78.55	60.52	43.51	67.51	50.55	65.78	62.31	40.41
Merged-chr9-110709946-3	chr9	110709842	110710042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028312, exon 4 of 7)	exon (NM_028312, exon 4 of 7)	32668.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	53.7	55.34	49.06	54.7	49.91	54.25	44.18	49.82	64.71	45.19	72.86	35.09
Merged-chr17-74459206-3	chr17	74459109	74459309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033367)	promoter-TSS (NM_001033367)	-101.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	64.61	69.17	53.62	56.71	70.77	104.42	46.84	58.51	87.13	77.83	81.9	52.0
Merged-chr16-33756179-3	chr16	33756091	33756291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37846.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	58.55	45.02	68.45	69.58	56.05	87.8	64.77	80.3	85.36	88.37	90.45	53.88
Merged-chr6-82971252-3	chr6	82971184	82971384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	24362.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	24.63	28.93	26.24	19.31	17.59	37.63	29.56	34.6	29.9	25.11	26.13	21.3
Merged-chr9-32676755-3	chr9	32676650	32676850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19292.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	35.53	28.67	45.07	33.38	39.68	48.6	24.91	72.67	32.06	27.11	44.22	27.88
Merged-chr19-45998382-4	chr19	45998302	45998502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198296)	promoter-TSS (NM_198296)	86.0	NM_198296	71617.0	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	35.53	41.75	34.23	43.44	44.59	48.29	52.15	30.25	40.91	52.72	40.2	32.27
Merged-chr5-129715498-3	chr5	129715403	129715603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356954)	promoter-TSS (NM_001356954)	6.0	NM_001356959	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	48.46	52.32	58.76	49.87	71.59	79.02	44.51	62.94	100.7	69.79	87.93	45.74
Merged-chr3-136684714-1	chr3	136684614	136684814	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	14648.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.85	1.51	2.28	5.23	4.09	13.17	14.62	9.87	0.59	5.02	0.0	2.51
Merged-chr18-12741802-1	chr18	12741702	12741902	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042419, intron 1 of 5)	intron (NM_001042419, intron 1 of 5)	447.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	12.92	10.56	13.69	11.66	12.68	13.8	6.31	15.5	29.7	13.56	40.7	16.29
Merged-chr17-48316130-3	chr17	48316040	48316240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177083)	promoter-TSS (NM_177083)	-22.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	18.57	17.61	27.38	23.33	31.09	30.73	13.29	25.82	32.26	23.1	38.69	27.57
Merged-chr7-30373706-3	chr7	30373620	30373820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10948.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	74.7	59.11	46.78	59.12	65.05	80.59	40.52	67.85	89.69	62.76	87.93	37.59
Merged-chr3-27584696-3	chr3	27584596	27584796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037275)	TTS (NR_037275)	299.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	48.46	31.94	59.33	54.7	65.05	72.75	65.11	82.68	59.4	69.79	95.47	41.35
Merged-chr2-167253684-3	chr2	167253574	167253774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13137.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	69.45	43.26	118.08	101.76	82.23	54.25	82.71	108.95	95.59	64.27	104.52	76.75
Merged-chr1-135517106-3	chr1	135517020	135517220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-62437.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	100.14	91.3	152.31	119.86	91.23	114.14	93.01	110.3	77.69	78.83	109.04	64.22
Merged-chr10-53616094-3	chr10	53615999	53616199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	14340.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	43.61	27.17	29.09	34.59	40.5	51.74	32.55	50.72	56.25	42.68	59.29	31.01
Merged-chr3-127572736-3	chr3	127572631	127572831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197997, intron 7 of 25)	intron (NM_197997, intron 7 of 25)	19242.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	35.13	28.17	34.23	60.33	36.41	42.02	33.22	50.83	72.97	47.7	86.93	56.39
Merged-chr5-23433936-3	chr5	23433837	23434037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	416.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	45.63	48.29	77.01	39.42	49.09	62.09	35.87	45.31	79.07	102.93	91.95	47.93
Merged-chr1-156002556-3	chr1	156002471	156002671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29316.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	23.82	18.86	39.36	26.14	20.46	19.44	12.29	33.25	46.62	23.6	66.33	23.49
Merged-chr11-115075578-2	chr11	115075478	115075678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13539.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	16.96	12.32	49.06	27.75	26.59	19.13	17.27	37.51	7.87	3.01	11.05	7.52
Merged-chr2-165857718-3	chr2	165857650	165857850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	423.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	41.59	24.65	40.5	28.56	36.41	44.53	22.92	35.92	23.6	30.63	28.64	23.81
Merged-chr2-31974397-3	chr2	31974320	31974520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-30.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	138.1	150.67	155.73	136.75	166.51	175.6	73.41	127.63	211.44	222.43	193.46	141.6
Merged-chr17-81580625-3	chr17	81580530	81580730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	157757.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	39.57	40.75	54.76	50.68	33.96	21.64	22.26	38.02	52.52	20.08	39.19	22.56
Merged-chr8-106168842-3	chr8	106168768	106168968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357382)	promoter-TSS (NM_001357382)	14.0	NM_178798	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	31.9	35.47	36.51	31.77	32.73	40.76	32.55	28.04	54.68	46.7	34.67	39.78
Merged-chr6-86487399-3	chr6	86487302	86487502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	825.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	34.73	27.17	45.07	41.83	46.23	57.38	35.87	49.12	44.25	49.21	56.28	34.46
Merged-chr18-4353455-3	chr18	4353360	4353560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-87.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	160.71	174.06	201.94	143.18	147.69	228.59	151.14	169.46	190.98	210.38	244.21	104.0
Merged-chr6-34177081-3	chr6	34176980	34177180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-26.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	151.83	161.73	160.87	147.21	165.69	193.47	129.88	178.8	174.07	141.59	212.55	100.25
Merged-chr1-165751357-3	chr1	165751253	165751453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12405.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	25.84	28.17	49.63	47.46	33.14	30.42	18.93	37.21	46.62	33.14	55.27	35.71
Merged-chr9-48480637-3	chr9	48480525	48480725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357505)	promoter-TSS (NM_001357505)	-14.0	NM_001357503	104444.0	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	76.72	89.04	94.7	108.19	150.14	135.15	95.33	112.88	120.77	98.41	163.81	79.88
Merged-chr15-100421363-3	chr15	100421256	100421456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	1699.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	121.95	107.91	85.0	90.49	116.19	144.24	76.73	81.56	146.53	139.59	123.61	98.99
Merged-chr10-67690216-3	chr10	67690128	67690328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-118269.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	33.11	36.97	54.76	46.25	31.91	47.66	37.54	63.06	49.17	29.12	46.73	31.33
Merged-chr10-41883088-3	chr10	41883013	41883213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-4326.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	54.11	45.78	44.5	44.64	36.41	52.68	38.86	34.21	66.68	34.14	31.66	12.53
Merged-chr8-84986039-5	chr8	84985940	84986140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4555.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	110.64	81.24	86.71	79.64	101.87	138.6	122.57	90.03	112.31	119.5	134.67	97.11
Merged-chr6-17635682-3	chr6	17635594	17635794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	84.39	54.08	85.57	64.75	85.09	105.67	82.71	95.33	87.72	78.83	135.67	55.76
Merged-chr5-148511941-1	chr5	148511841	148512041	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011908, exon 2 of 5)	exon (NM_011908, exon 2 of 5)	39732.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.86	4.28	9.13	8.85	2.05	2.51	10.96	9.93	3.34	1.0	7.03	4.7
Merged-chr7-83892016-3	chr7	83891948	83892148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023403)	promoter-TSS (NM_023403)	48.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	195.84	175.57	196.24	164.9	195.55	234.55	178.71	219.95	264.55	242.52	349.73	160.71
Merged-chr6-129407108-2	chr6	129407002	129407202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1760.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	18.17	8.05	21.68	29.36	21.68	12.23	15.94	19.4	24.19	14.06	22.11	13.47
Merged-chr7-126695893-3	chr7	126695854	126696054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	-46.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	100.14	69.67	105.53	67.97	105.96	135.78	53.15	74.22	90.67	82.85	93.96	50.12
Merged-chr5-31871019-3	chr5	31870917	31871117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	MTEa|LTR|ERVL-MaLR	172967.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	33.11	25.91	52.48	52.29	38.46	32.93	33.88	43.79	35.6	31.63	47.23	25.69
Merged-chr16-36627040-3	chr16	36626948	36627148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	39029.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	120.73	91.3	116.94	119.86	120.69	151.46	118.59	132.73	141.81	114.98	221.09	79.88
Merged-chr17-15695771-3	chr17	15695668	15695868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9199.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	66.22	69.17	66.17	83.26	71.59	86.23	59.13	98.36	93.82	87.37	123.11	67.98
Merged-chr7-120917670-3	chr7	120917564	120917764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025298)	promoter-TSS (NM_025298)	-80.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	193.01	206.25	176.84	207.13	204.55	217.62	191.66	126.73	192.95	195.82	197.98	120.61
Merged-chr12-28750451-3	chr12	28750337	28750537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	16.0	NM_001161411	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	60.57	65.15	57.05	42.23	54.41	86.23	43.18	68.66	97.95	95.4	103.51	51.38
Merged-chr7-35802927-3	chr7	35802817	35803017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177739)	promoter-TSS (NM_177739)	72.0	NM_177739	668501.0	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	18.98	22.13	15.97	18.9	16.77	20.7	21.92	14.52	23.41	29.12	20.1	21.93
Merged-chr16-45148754-3	chr16	45148684	45148884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028756, intron 4 of 6)	intron (NM_028756, intron 4 of 6)	9889.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	51.69	16.1	27.95	32.98	40.09	48.6	41.52	60.0	34.03	27.62	30.15	31.33
Merged-chrUn_JH584304-34300-1	chrUn_JH584304	34200	34400	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25389.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	26.36	20.08	27.13	34.46
Merged-chr5-124480345-3	chr5	124480224	124480424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2089.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	109.83	125.76	138.05	128.7	108.41	153.65	123.9	117.11	174.07	177.24	219.08	121.23
Merged-chr4-128660314-3	chr4	128660220	128660420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	5618.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	67.03	40.24	61.61	42.63	74.87	58.01	51.15	83.36	64.91	66.28	72.36	38.85
Merged-chr5-110135756-3	chr5	110135653	110135853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289580)	promoter-TSS (NM_001289580)	-77.0	NM_172717	231600.0	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	136.08	107.65	115.8	150.02	194.73	190.34	156.45	191.22	194.33	168.21	224.11	113.09
Merged-chr17-35172655-3	chr17	35172550	35172750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361501, exon 3 of 8)	5' UTR (NM_001361501, exon 3 of 8)	3402.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	41.59	36.97	28.52	53.09	50.32	40.14	23.92	46.74	64.71	63.27	73.86	43.54
Merged-chr13-74390888-3	chr13	74390792	74390992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14326.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	35.53	37.23	49.06	51.08	33.96	36.69	37.87	49.79	55.66	62.26	59.29	44.8
Merged-chr15-99260121-3	chr15	99260041	99260241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-8180.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	26.25	27.67	37.08	22.93	42.55	45.78	15.61	30.76	43.86	34.14	29.14	19.74
Merged-chr8-125359703-2	chr8	125359601	125359801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133132.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	23.82	21.38	22.82	35.8	35.18	19.76	30.23	41.36	2.36	1.0	2.51	3.45
Merged-chr15-79892346-3	chr15	79892247	79892447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-61.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	60.57	53.58	97.55	65.56	84.68	81.84	44.18	74.86	45.04	38.16	45.73	26.31
Merged-chr11-84513559-3	chr11	84513441	84513641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019816)	promoter-TSS (NM_019816)	-40.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	69.05	56.09	66.17	47.06	74.87	91.88	35.21	60.22	118.01	82.35	82.91	82.39
Merged-chr5-115327104-3	chr5	115327020	115327220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-57.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	56.94	57.6	59.9	46.25	79.37	84.66	30.56	50.94	75.92	108.96	76.88	39.78
Merged-chr5-64680224-3	chr5	64680136	64680336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69537.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	24.23	15.59	45.64	25.74	25.36	30.73	21.92	31.65	33.04	28.62	51.25	18.8
Merged-chr7-30184096-3	chr7	30183988	30184188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009944)	promoter-TSS (NM_009944)	-83.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	154.65	171.29	141.47	128.7	153.82	281.59	188.67	145.43	226.58	231.47	219.08	95.23
Merged-chr5-34531844-3	chr5	34531745	34531945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	6061.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	48.05	36.97	46.21	30.57	33.14	47.98	37.54	33.76	30.29	40.17	35.17	30.07
Merged-chr3-133583834-3	chr3	133583742	133583942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39452.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	24.63	23.14	30.23	41.43	42.55	18.5	16.61	29.5	46.03	38.16	45.22	27.25
Merged-chr18-58659445-3	chr18	58659370	58659570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	-12.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	24.23	11.82	18.83	23.33	40.5	37.0	16.61	39.22	33.04	30.13	69.85	22.56
Merged-chrX-13071967-3	chrX	13071865	13072065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009481, intron 1 of 44)	CpG	467.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	35.94	37.48	58.76	42.63	39.27	55.5	49.83	49.93	62.55	58.75	78.39	38.85
Merged-chr9-7846932-3	chr9	7846840	7847040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9883.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	38.36	43.51	44.5	21.72	18.82	43.59	25.24	15.67	51.14	46.19	35.68	19.11
Merged-chr16-87495927-3	chr16	87495843	87496043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009840)	promoter-TSS (NM_009840)	-74.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	110.64	107.91	104.96	117.04	113.73	150.2	102.97	86.1	156.96	186.78	164.81	115.91
Merged-chr13-21402649-3	chr13	21402544	21402744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145778, intron 1 of 5)	CpG	111.0	NM_001145778	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	31.9	43.01	45.64	69.98	38.05	58.95	78.06	51.59	40.71	57.74	47.74	33.83
Merged-chr17-78373404-3	chr17	78373312	78373512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44740.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	25.84	16.6	46.21	39.82	20.05	29.79	27.57	44.41	32.65	24.6	43.72	19.11
Merged-chr14-20294647-3	chr14	20294527	20294727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-63.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	98.12	79.99	107.82	59.93	94.09	124.8	54.81	61.35	106.8	112.47	125.62	46.99
Merged-chr10-87842326-3	chr10	87842212	87842412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15953.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	11.71	18.61	13.69	18.1	20.86	28.85	23.58	29.64	37.17	20.08	28.64	12.53
Merged-chr10-3973813-3	chr10	3973707	3973907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 1 of 27)	CpG	732.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	74.7	43.51	72.45	69.58	84.28	88.74	71.08	113.89	71.99	60.75	91.45	39.16
Merged-chr10-91182148-1	chr10	91182048	91182248	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-10529.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	37.15	21.63	19.97	21.72	27.0	27.59	16.61	26.55	51.34	24.6	59.29	22.87
Merged-chr10-80165162-3	chr10	80165049	80165249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2690.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	77.93	54.83	46.78	45.45	53.18	67.73	36.54	68.61	65.5	72.3	67.33	50.12
Merged-chr6-71831781-3	chr6	71831665	71831865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362138, intron 1 of 13)	CpG	445.0	NM_001253686	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	102.97	94.32	122.65	132.73	135.0	144.56	110.95	151.18	128.83	149.13	175.37	88.03
Merged-chr6-52640329-3	chr6	52640179	52640379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145567)	promoter-TSS (NM_145567)	21.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	111.04	110.67	96.41	121.06	151.37	142.05	100.65	126.34	116.44	158.16	167.33	89.28
Merged-chr1-55053230-3	chr1	55053138	55053338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026424, intron 1 of 3)	CpG	468.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	100.14	72.44	94.7	81.65	67.09	140.48	85.04	88.65	119.98	120.0	155.27	69.23
Merged-chr13-4663036-3	chr13	4662960	4663160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53896.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	70.26	70.43	66.74	65.96	102.28	106.93	49.16	114.14	141.62	162.68	190.94	93.98
Merged-chr7-3898254-3	chr7	3898143	3898343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289428)	promoter-TSS (NM_001289428)	-93.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	52.09	34.21	52.48	46.66	72.41	86.55	56.8	41.89	64.51	77.32	105.02	30.7
Merged-chr4-8536181-3	chr4	8536080	8536280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021518, intron 1 of 7)	CpG	536.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	48.86	47.79	59.9	58.72	24.96	42.96	33.55	39.34	54.88	45.19	42.71	32.89
Merged-chr6-56797041-3	chr6	56796943	56797143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001362209, exon 1 of 4)	5' UTR (NM_001362209, exon 1 of 4)	170.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	14.94	9.56	9.7	8.04	27.0	19.13	20.93	20.75	20.65	31.13	29.65	24.43
Merged-chr16-20382171-3	chr16	20382081	20382281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 12 of 29)	intron (NM_013790, intron 12 of 29)	44213.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	23.02	31.19	38.22	44.64	28.64	45.47	58.46	58.04	50.16	30.13	51.76	24.43
Merged-chr14-30825612-3	chr14	30825505	30825705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028839)	promoter-TSS (NM_028839)	11.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	31.09	22.89	40.5	36.6	25.36	37.94	23.25	24.64	32.06	47.2	47.74	29.13
Merged-chr1-143918569-3	chr1	143918473	143918673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85576.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	73.49	51.81	88.99	87.28	52.37	55.82	45.84	86.66	65.3	75.82	64.82	49.81
Merged-chr2-60021772-3	chr2	60021682	60021882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	103958.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	25.44	33.2	54.76	48.67	40.5	43.27	32.22	58.43	49.17	37.66	61.3	44.48
Merged-chr13-103900187-3	chr13	103900098	103900298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	B4A|SINE|B4	20388.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	21.4	11.07	15.4	29.76	22.09	16.62	22.92	43.82	28.13	19.08	35.17	13.47
Merged-chr12-17658592-3	chr12	17658504	17658704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32205.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	44.42	52.57	76.44	33.38	58.09	96.27	93.01	40.12	43.47	27.11	40.7	12.84
Merged-chr6-31079814-3	chr6	31079714	31079914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16721.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	64.61	50.05	138.05	102.16	107.19	113.83	131.87	205.01	117.62	101.93	196.97	87.4
Merged-chr3-51559819-3	chr3	51559753	51559953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033624)	promoter-TSS (NR_033624)	96.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	43.61	49.3	50.2	40.62	40.91	61.46	39.53	42.03	44.84	40.67	42.21	42.6
Merged-chr10-7662700-2	chr10	7662613	7662813	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-658.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	9.29	11.57	6.28	4.42	32.73	19.76	14.28	12.87	21.05	26.61	32.16	11.59
Merged-chr11-53820863-2	chr11	53820758	53820958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	38398.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	21.8	22.89	46.78	3.62	4.91	13.8	3.32	2.05	53.11	19.08	29.14	20.05
Merged-chr6-134049146-3	chr6	134049040	134049240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	13440.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	23.02	21.38	25.67	26.14	24.96	28.85	19.93	24.5	32.45	16.07	30.65	34.15
Merged-chr19-10294708-3	chr19	10294636	10294836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	10141.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	31.9	40.24	27.95	39.01	27.0	37.0	22.92	25.6	21.24	25.61	33.16	24.12
Merged-chr3-123508469-3	chr3	123508373	123508573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028574)	promoter-TSS (NR_028574)	-137.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	289.93	277.69	232.75	239.31	326.06	365.0	256.44	259.37	416.98	420.76	435.15	226.18
Merged-chr7-131371180-3	chr7	131371088	131371288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039534)	promoter-TSS (NM_001039534)	42.0	NM_001039534	214580.0	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	62.59	50.56	73.02	52.29	65.46	63.34	71.42	81.5	64.32	47.2	67.84	39.47
Merged-chr7-31208365-3	chr7	31208273	31208473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	46015.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	32.71	28.93	30.8	26.95	21.68	28.85	29.9	22.32	20.26	23.6	26.13	15.66
Merged-chr5-66106623-3	chr5	66106579	66106779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-8500.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	23.42	25.66	37.08	23.33	33.14	47.98	25.24	35.33	31.27	25.11	39.19	22.56
Merged-chr19-8713808-8	chr19	8713681	8713881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008577, exon 1 of 9)	5' UTR (NM_008577, exon 1 of 9)	116.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	26.65	28.93	31.95	26.95	33.14	33.87	26.91	22.12	28.13	27.62	36.18	24.75
Merged-chr10-111074072-3	chr10	111073969	111074169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64003.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	18.98	16.6	33.09	21.32	32.73	24.46	28.23	37.74	29.5	26.61	41.2	20.36
Merged-chr19-8983498-3	chr19	8983385	8983585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5799.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	33.11	31.19	33.09	31.77	49.91	37.94	36.87	27.2	32.85	42.68	61.3	21.62
Merged-chr11-51635833-3	chr11	51635724	51635924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	72.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	38.36	26.16	14.83	21.72	29.46	38.88	26.57	28.93	31.27	38.66	33.16	19.74
Merged-chr9-118868923-3	chr9	118868807	118869007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-57629.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	34.32	20.88	60.47	35.39	18.82	32.61	28.57	50.78	28.91	17.07	29.65	23.49
Merged-chr7-25708181-2	chr7	25708079	25708279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10874.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	27.46	14.59	21.11	15.69	34.77	32.61	24.25	27.84	25.37	19.08	18.59	13.16
Merged-chr13-112530043-3	chr13	112529946	112530146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139299, intron 14 of 16)	intron (NM_139299, intron 14 of 16)	50616.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	25.44	24.4	66.17	37.4	90.82	47.66	69.76	90.11	59.99	72.81	119.59	50.75
Merged-chr4-150855054-3	chr4	150854945	150855145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	-25.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	118.72	139.09	103.25	97.73	101.05	136.4	87.03	91.37	159.12	195.32	143.21	112.15
Merged-chr13-113636109-3	chr13	113636019	113636219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17555.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	13.73	22.39	18.83	25.34	51.14	38.88	41.19	74.44	54.29	54.73	72.86	50.75
Merged-chr5-99203632-3	chr5	99203524	99203724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	29.48	21.88	24.53	18.9	49.09	33.24	22.26	40.99	37.17	38.66	22.61	19.74
Merged-chr11-100939550-3	chr11	100939422	100939622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	18.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	276.2	196.19	199.09	217.59	252.83	315.77	145.16	212.61	313.52	360.01	353.25	176.37
Merged-chr6-128764277-3	chr6	128764168	128764368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24373.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	115.49	139.6	155.73	173.75	127.64	157.73	93.67	124.94	182.92	186.78	170.84	163.53
Merged-chr18-73812759-3	chr18	73812650	73812850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145494, intron 1 of 15)	B4A|SINE|B4	2642.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	38.36	17.36	32.52	32.58	38.46	38.88	52.48	78.34	15.14	19.58	25.12	19.11
Merged-chr17-6430104-3	chr17	6430008	6430208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009342)	promoter-TSS (NM_009342)	-4.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	113.47	93.32	122.65	95.32	222.14	213.54	105.3	130.63	110.74	99.42	130.65	75.5
Merged-chr5-65764520-3	chr5	65764425	65764625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024917, intron 1 of 19)	CpG	1004.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	32.3	22.39	29.09	20.51	24.14	29.48	17.94	24.87	34.03	36.65	40.7	35.09
Merged-chr5-64619992-3	chr5	64619893	64620093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9294.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	21.0	19.12	25.1	20.51	25.36	34.18	20.93	27.73	43.27	51.21	39.7	27.25
Merged-chr5-29378439-3	chr5	29378326	29378526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020295)	promoter-TSS (NM_020295)	-36.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	86.82	87.78	103.25	90.09	74.05	90.62	70.09	80.5	109.36	111.97	157.78	60.15
Merged-chr12-75721157-3	chr12	75721057	75721257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	14572.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	46.84	41.25	46.21	55.1	66.27	67.73	55.47	81.65	52.71	23.6	36.68	15.04
Merged-chr9-72491940-3	chr9	72491832	72492032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009359)	promoter-TSS (NM_009359)	27.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	16.15	16.85	26.81	22.52	18.0	24.77	29.56	13.32	26.36	20.08	35.17	14.72
Merged-chr18-88845719-2	chr18	88845626	88845826	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48481.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.25	4.53	5.13	5.23	21.27	15.68	19.93	23.22	27.34	37.16	44.72	21.62
Merged-chr4-118620732-3	chr4	118620599	118620799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026789)	promoter-TSS (NM_026789)	-100.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	35.53	28.93	31.95	47.86	33.96	31.67	26.91	19.4	50.55	45.69	49.24	28.51
Merged-chr7-44496448-3	chr7	44496313	44496513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028169)	promoter-TSS (NM_028169)	100.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	82.37	69.17	65.6	83.26	85.91	79.33	57.47	60.08	91.85	102.93	100.5	63.28
Merged-chr18-82534589-3	chr18	82534491	82534691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-19872.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	30.28	18.86	34.23	34.99	33.55	33.24	31.89	41.41	24.19	36.15	30.15	16.92
Merged-chr9-108341991-3	chr9	108341880	108342080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2900.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	33.11	26.91	16.54	13.67	28.23	41.08	24.58	42.9	51.53	47.7	54.27	31.95
Merged-chr1-33883560-3	chr1	33883466	33883666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177235, exon 2 of 7)	5' UTR (NM_177235, exon 2 of 7)	24055.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	46.84	37.48	45.07	60.73	51.14	46.1	27.9	50.66	40.71	54.73	62.81	32.58
Merged-chr11-118248684-3	chr11	118248588	118248788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-96.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	239.05	227.88	212.78	188.23	263.46	299.15	195.98	166.57	288.74	301.77	288.43	167.28
Merged-chr17-55752585-3	chr17	55752473	55752673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	2589.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	49.26	56.09	55.9	43.84	61.77	101.6	54.14	61.79	44.25	42.68	43.72	17.54
Merged-chr2-132253297-3	chr2	132253187	132253387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-107.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	184.53	178.58	213.92	154.85	211.1	278.14	136.19	185.89	235.04	263.1	292.44	148.8
Merged-chr6-149193738-3	chr6	149193619	149193819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-5007.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	145.77	124.51	112.95	108.59	147.69	163.69	105.96	112.54	195.31	222.43	229.13	103.06
Merged-chr7-92878826-3	chr7	92878779	92878979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	3626.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	46.03	59.61	100.97	99.75	56.05	68.67	74.41	90.76	79.27	66.78	80.4	67.98
Merged-chr16-10991182-3	chr16	10991086	10991286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1935.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	24.23	17.1	33.66	26.14	21.68	26.03	23.58	34.15	41.5	12.55	46.23	18.48
Merged-chr16-11456469-3	chr16	11456361	11456561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50813.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	94.49	105.14	68.45	94.52	99.41	134.21	93.67	65.58	216.75	252.56	246.72	151.31
Merged-chr15-76925637-3	chr15	76925503	76925703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172817)	promoter-TSS (NM_172817)	-155.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	28.27	32.2	24.53	29.36	28.64	42.65	22.26	24.31	28.13	31.13	37.18	21.3
Merged-chr4-11480184-3	chr4	11480082	11480282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5776.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	22.61	18.11	28.52	26.55	27.41	21.01	18.27	39.5	36.78	25.11	39.7	24.43
Merged-chr1-143777725-2	chr1	143777622	143777822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	444.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	17.36	20.63	26.81	31.77	28.64	25.4	27.57	29.75	24.39	23.1	35.17	26.0
Merged-chr6-136828348-3	chr6	136828268	136828468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-152.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	222.49	257.56	214.49	232.07	261.83	315.77	230.53	291.37	333.19	384.11	348.72	208.95
Merged-chr1-157016778-3	chr1	157016678	157016878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-77152.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	31.09	22.39	48.49	37.0	24.14	25.71	35.21	42.17	27.14	25.11	38.19	30.07
Merged-chr10-37261287-3	chr10	37261188	37261388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122362.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	48.46	32.45	45.07	40.62	56.87	57.7	38.53	46.65	55.66	40.17	73.36	21.93
Merged-chr14-70057126-3	chr14	70057025	70057225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-20320.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	176.05	177.58	231.61	205.93	199.23	243.02	216.58	223.96	224.62	236.99	292.95	163.84
Merged-chr7-111122273-3	chr7	111122163	111122363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015573, intron 1 of 2)	CpG	412.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	25.44	35.72	26.81	53.49	41.73	36.69	42.52	36.93	33.83	18.58	42.21	32.89
Merged-chr5-147059514-3	chr5	147059413	147059613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	17059.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	92.87	67.41	94.7	83.26	112.09	87.8	80.05	112.51	34.62	22.09	40.2	20.68
Merged-chr6-57691640-2	chr6	57691491	57691691	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025574, intron 1 of 1)	intron (NM_025574, intron 1 of 1)	487.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	32.3	23.14	31.38	34.99	38.05	33.87	57.47	49.26	37.76	36.65	40.2	17.54
Merged-chr2-32288199-3	chr2	32288096	32288296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	-57.0	NM_133852	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	177.67	180.35	166.0	143.59	197.19	268.42	137.52	146.1	203.97	253.56	246.22	125.31
Merged-chr1-74788013-3	chr1	74787919	74788119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4000.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	29.07	26.16	15.97	24.53	18.0	20.7	10.3	10.07	23.01	22.09	24.62	23.18
Merged-chr11-4218166-3	chr11	4218065	4218265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028022)	promoter-TSS (NM_028022)	-86.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	27.46	15.85	17.68	22.52	38.05	40.45	18.6	34.32	27.54	31.63	24.12	25.06
Merged-chr16-44962986-3	chr16	44962879	44963079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027578, intron 4 of 4)	MIR3|SINE|MIR	19301.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	64.2	84.76	83.86	155.65	109.64	103.79	99.65	122.44	120.37	130.05	147.73	83.33
Merged-chr5-115484433-3	chr5	115484316	115484516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167691)	promoter-TSS (NM_001167691)	68.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	51.28	36.97	39.36	49.87	60.14	67.42	22.92	47.38	66.48	71.3	67.33	55.45
Merged-chr10-44702284-3	chr10	44702177	44702377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-243529.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	49.67	53.07	88.42	63.95	54.0	99.4	72.41	98.75	73.56	66.28	89.44	55.45
Merged-chr4-16163871-3	chr4	16163753	16163953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329751)	promoter-TSS (NM_001329751)	-210.0	NR_138102	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	179.69	164.5	135.77	160.48	213.96	274.69	197.31	181.77	352.07	363.02	386.41	165.72
Merged-chr13-37994205-3	chr13	37994129	37994329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025965)	promoter-TSS (NM_025965)	-21.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	71.07	64.14	81.58	64.35	98.18	91.56	54.14	57.06	165.02	164.19	182.9	90.85
Merged-chr11-70720757-3	chr11	70720663	70720863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153103, intron 18 of 22)	intron (NM_153103, intron 18 of 22)	14773.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	115.49	116.96	137.48	135.14	186.55	163.69	185.02	172.63	127.85	153.64	157.78	105.57
Merged-chr14-30694956-3	chr14	30694808	30695008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19941.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	21.8	29.18	26.81	32.58	40.5	31.98	28.57	49.57	25.37	28.62	26.63	18.48
Merged-chr3-60501296-3	chr3	60501212	60501412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001253710, exon 1 of 8)	5' UTR (NM_001253710, exon 1 of 8)	133.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	90.45	58.35	46.78	61.13	44.59	41.71	35.87	39.28	54.48	73.31	54.77	28.82
Merged-chr18-61489346-3	chr18	61489242	61489442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102c|DNA|hAT-Charlie	-4735.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	32.3	19.37	26.81	20.51	29.46	33.55	22.59	30.9	42.48	27.62	61.81	32.89
Merged-chr12-80326160-3	chr12	80326058	80326258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65519.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	35.94	26.16	43.93	39.01	41.73	40.14	54.14	53.16	55.86	20.08	52.76	35.71
Merged-chr8-88651383-3	chr8	88651273	88651473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 1 of 12)	MTB|LTR|ERVL-MaLR	4026.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	94.08	97.84	110.1	74.81	130.5	145.5	71.08	50.24	122.93	104.44	102.51	50.75
Merged-chr11-105126398-3	chr11	105126300	105126500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-25.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	56.94	54.83	35.94	34.59	62.18	65.85	35.54	41.24	62.74	70.29	61.81	37.28
Merged-chr12-24651853-3	chr12	24651756	24651956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178357, intron 1 of 3)	CpG	485.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	130.83	126.27	148.89	119.05	177.96	217.62	141.5	172.65	156.37	152.14	194.96	93.67
Merged-chr2-11192943-3	chr2	11192826	11193026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20544.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	19.79	18.36	46.21	33.78	22.5	23.52	13.62	21.11	35.8	28.62	23.62	15.35
Merged-chr15-101254102-3	chr15	101253998	101254198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12748.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	95.3	75.46	109.53	76.02	107.59	120.73	74.41	87.36	168.17	142.6	210.54	102.75
Merged-chr10-118879205-3	chr10	118879120	118879320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-10317.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	34.73	41.25	38.79	44.64	42.55	83.1	77.73	49.71	53.5	52.22	62.81	26.31
Merged-chr4-53217740-3	chr4	53217645	53217845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28451.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	32.71	46.53	19.4	35.39	47.87	90.62	63.78	59.19	52.91	54.73	70.85	21.3
Merged-chr2-60810803-3	chr2	60810701	60810901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	70637.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	44.01	22.13	62.18	37.4	45.0	43.27	47.17	80.61	32.06	32.64	71.35	31.64
Merged-chr4-28812957-3	chr4	28812861	28813061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122889)	promoter-TSS (NM_001122889)	-170.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	34.73	27.42	23.39	41.43	35.18	47.98	45.84	55.54	49.96	49.21	95.47	25.69
Merged-chr6-97457381-3	chr6	97457281	97457481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1905.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	125.18	108.66	163.15	138.76	152.19	151.77	145.82	140.86	128.63	132.05	178.88	93.98
Merged-chr18-34856392-3	chr18	34856291	34856491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4816.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	101.76	104.89	115.23	149.62	111.69	151.14	95.33	167.89	147.91	111.97	208.03	93.67
Merged-chr3-59153584-3	chr3	59153482	59153682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287119)	promoter-TSS (NM_001287119)	46.0	NR_045641	320463.0	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	83.18	76.72	92.41	73.6	65.87	50.17	53.48	76.26	84.58	69.29	107.03	51.69
Merged-chr17-35202071-3	chr17	35201976	35202176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-69.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	96.91	100.36	59.9	66.77	70.37	155.22	38.2	40.32	99.72	129.04	94.47	43.23
Merged-chr14-31436143-3	chr14	31436033	31436233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-33.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	154.25	165.25	151.74	137.55	183.69	238.32	132.2	164.83	196.69	195.82	266.32	112.15
Merged-chrX-163827755-3	chrX	163827661	163827861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-66429.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	23.02	17.1	27.95	38.21	43.36	39.82	37.2	54.5	33.63	21.59	52.76	21.62
Merged-chr6-48593826-3	chr6	48593744	48593944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079901)	promoter-TSS (NM_001079901)	-39.0	NM_001079905	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	35.13	38.23	51.34	51.48	60.96	56.44	36.54	55.77	52.71	57.74	79.39	47.62
Merged-chr4-144891422-3	chr4	144891322	144891522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1405.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	29.88	19.12	22.82	29.76	44.18	30.1	38.86	54.76	28.91	24.1	35.17	24.75
Merged-chr4-134853411-3	chr4	134853290	134853490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-45.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	122.35	120.98	119.23	111.81	126.41	158.98	91.01	89.89	166.4	161.68	119.59	97.11
Merged-chr9-69993167-3	chr9	69993046	69993246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	3680.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	46.84	38.48	34.23	37.0	42.55	69.3	26.57	29.24	37.76	46.19	39.7	18.17
Merged-chr12-108894230-3	chr12	108894143	108894343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-29.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	126.39	105.64	157.45	133.53	155.05	158.04	112.61	171.11	192.75	162.68	232.65	102.44
Merged-chr7-35333983-3	chr7	35333887	35334087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027897)	promoter-TSS (NM_027897)	-250.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	62.99	44.52	65.03	64.75	78.55	95.01	55.14	93.93	64.51	47.2	74.87	40.1
Merged-chr4-41314406-3	chr4	41314318	41314518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026893, intron 1 of 8)	CpG	483.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	18.17	31.44	30.23	41.83	24.96	42.33	44.84	31.77	29.9	32.64	61.81	37.59
Merged-chr6-72390171-3	chr6	72390060	72390260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	507.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	14.54	16.85	23.39	16.09	15.55	22.26	24.25	18.73	24.0	39.16	30.65	18.8
Merged-chr7-27473519-5	chr7	27473404	27473604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-336.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	70.66	81.75	85.57	101.76	78.14	91.88	98.32	70.23	79.86	105.44	96.48	75.18
Merged-chr15-83009182-3	chr15	83009092	83009292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13946.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	22.21	17.1	17.11	8.45	18.82	38.57	23.58	18.84	38.94	33.14	44.22	23.49
Merged-chr6-135168183-3	chr6	135168085	135168285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013546)	promoter-TSS (NM_013546)	30.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	54.92	51.56	46.21	49.87	63.82	62.09	39.86	54.62	78.48	77.83	113.56	46.05
Merged-chr16-91012038-3	chr16	91011940	91012140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164483)	promoter-TSS (NM_001164483)	-732.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	48.46	29.93	36.51	39.42	33.96	35.43	18.93	32.69	45.43	59.25	54.27	23.49
Merged-chr7-104465265-3	chr7	104465185	104465385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-92.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	92.87	79.48	87.28	125.49	128.87	125.12	82.38	74.97	100.7	101.43	109.54	85.21
Merged-chr2-127133950-3	chr2	127133836	127134036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144818)	promoter-TSS (NM_144818)	18.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	19.79	28.93	46.78	14.08	26.18	29.79	12.29	26.58	42.68	42.18	30.65	31.33
Merged-chr9-78631972-1	chr9	78631872	78632072	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153098, intron 2 of 32)	intron (NM_153098, intron 2 of 32)	16426.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	6.86	1.51	6.28	4.42	0.41	9.41	4.32	8.97	7.47	1.51	11.56	3.76
Merged-chr19-43885297-3	chr19	43885222	43885422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-5554.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	16.96	25.15	27.95	37.0	22.5	15.37	23.58	34.26	22.82	14.56	18.59	12.84
Merged-chr17-47250151-3	chr17	47250059	47250259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	19929.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	52.49	31.69	57.62	57.51	60.14	71.81	30.23	65.64	69.23	44.19	89.94	50.44
Merged-chr19-12439755-3	chr19	12439639	12439839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	11834.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	15.75	12.32	13.69	5.63	38.46	35.43	22.59	25.68	31.67	54.23	42.71	24.43
Merged-chr1-15805591-3	chr1	15805497	15805697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-49.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	92.47	103.63	138.05	114.22	147.28	161.18	117.92	195.81	214.39	197.33	282.4	118.41
Merged-chr16-49858694-3	chr16	49858599	49858799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	3045.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	92.47	87.78	106.68	88.08	109.23	100.03	75.4	105.56	137.09	120.0	163.31	60.46
Merged-chr8-84975632-3	chr8	84975552	84975752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011563)	TTS (NM_011563)	3096.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	18.17	19.37	22.82	33.38	21.68	29.79	24.91	28.65	30.68	28.12	27.64	15.35
Merged-chr1-135735473-3	chr1	135735361	135735561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	6294.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	21.8	16.85	22.25	29.76	15.55	22.58	30.23	32.44	45.83	24.1	37.69	21.3
Merged-chr11-121734410-3	chr11	121734301	121734501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31974.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	50.88	40.24	29.09	46.66	69.55	76.51	37.87	41.5	63.53	93.39	93.46	67.67
Merged-chr4-142089048-3	chr4	142088941	142089141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027137)	TTS (NR_027137)	-4737.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	38.36	22.89	52.48	38.61	43.36	37.0	37.2	47.5	42.09	41.67	52.26	25.37
Merged-chr11-115603889-3	chr11	115603814	115604014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025305)	promoter-TSS (NM_025305)	2.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	65.82	35.97	47.35	43.44	56.05	75.26	24.58	38.27	65.3	87.37	70.35	48.24
Merged-chr2-26744539-3	chr2	26744436	26744636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12816.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	73.89	71.18	59.9	29.36	80.59	114.14	65.44	55.46	87.72	117.99	100.5	46.05
Merged-chr12-102380327-3	chr12	102380233	102380433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59480.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	31.9	25.91	34.8	29.76	31.09	35.43	25.91	33.76	34.62	26.61	40.7	21.93
Merged-chr6-149141527-3	chr6	149141437	149141637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177101)	promoter-TSS (NM_177101)	24.0	NM_001252095	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	111.04	98.85	86.71	92.51	108.41	105.67	55.8	114.31	106.6	93.89	140.7	69.55
Merged-chr18-70644536-3	chr18	70644454	70644654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76262.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	30.28	21.63	45.07	30.97	54.82	45.15	35.54	57.84	63.92	66.28	73.36	35.71
Merged-chr9-110305258-4	chr9	110305178	110305378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	86.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	20.59	21.38	34.8	30.57	13.5	30.42	30.89	21.53	26.55	35.15	31.66	20.05
Merged-chr15-5414611-3	chr15	5414516	5414716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81702.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	77.93	38.74	57.05	57.92	59.73	74.94	45.51	71.08	85.36	61.76	83.91	38.53
Merged-chr19-45047676-3	chr19	45047598	45047798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_155547, exon 1 of 11)	non-coding (NR_155547, exon 1 of 11)	122.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	72.28	60.37	57.05	67.17	62.59	64.6	57.13	42.39	51.14	40.17	48.24	36.65
Merged-chr8-109692920-3	chr8	109692831	109693031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 1 of 10)	CpG	363.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	31.09	41.0	22.25	42.23	38.05	52.37	53.15	33.56	47.6	44.69	48.24	43.86
Merged-chr11-93968454-3	chr11	93968361	93968561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	60.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	126.79	78.23	64.46	83.66	86.73	125.74	54.81	67.57	120.96	138.58	113.06	59.83
Merged-chr4-148676811-3	chr4	148676706	148676906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33489.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	31.09	32.2	27.95	36.6	23.73	40.14	17.27	26.1	35.6	43.68	57.79	23.18
Merged-chr12-84009440-3	chr12	84009356	84009556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012006)	promoter-TSS (NM_012006)	-46.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	57.74	27.17	42.21	36.6	56.46	77.77	46.84	58.18	41.3	47.2	34.67	20.99
Merged-chr2-21022579-3	chr2	21022467	21022667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53693.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	19.79	26.91	22.25	33.78	26.59	31.98	25.24	39.81	37.76	23.1	46.73	26.31
Merged-chr13-111936144-3	chr13	111936041	111936241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68205.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	186.96	149.41	211.64	230.46	173.46	156.47	159.77	183.48	168.56	136.57	215.57	122.49
Merged-chr13-110944862-3	chr13	110944758	110944958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41012.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	73.89	57.85	106.1	88.89	103.09	73.06	84.7	125.13	87.72	57.24	106.53	64.53
Merged-chr7-80832409-3	chr7	80832312	80832512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-29081.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	33.11	30.94	47.35	32.18	39.27	56.76	36.87	42.5	35.99	32.13	61.3	21.62
Merged-chr5-32863606-3	chr5	32863493	32863693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-128.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	67.43	71.69	78.72	73.2	96.96	99.4	47.5	70.29	94.21	95.9	98.49	65.16
Merged-chr2-38514614-3	chr2	38514520	38514720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	2744.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	62.59	51.31	79.29	69.18	62.59	74.32	49.49	79.07	57.04	70.8	62.31	37.28
Merged-chr12-70476948-3	chr12	70476894	70477094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23840.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	35.53	32.45	32.52	51.08	33.14	30.73	24.25	33.5	31.08	38.66	36.18	27.25
Merged-chr3-138143440-3	chr3	138143345	138143545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348196)	promoter-TSS (NM_001348196)	-3.0	NM_175389	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	65.41	32.95	49.63	59.12	72.0	71.18	35.87	61.51	102.47	97.41	124.62	84.27
Merged-chr8-126583100-1	chr8	126583000	126583200	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10336.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.06	4.53	6.28	2.82	13.09	16.31	3.65	5.72	6.49	5.52	4.02	5.01
Merged-chr7-122251914-3	chr7	122251824	122252024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32428.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	16.96	20.37	24.53	14.88	19.64	24.77	12.62	22.37	32.06	44.69	49.24	18.8
Merged-chr15-86244584-1	chr15	86244484	86244684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	L1MA4|LINE|L1	30125.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	19.79	26.66	31.95	20.11	4.91	1.88	4.65	1.85	2.56	1.0	1.0	2.19
Merged-chr2-117121496-1	chr2	117121396	117121596	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_033524, exon 1 of 7)	5' UTR (NM_033524, exon 1 of 7)	425.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	8.88	19.12	11.41	9.65	19.64	33.55	18.27	10.29	17.11	23.1	30.65	6.89
Merged-chr4-118437436-3	chr4	118437345	118437545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-102.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	111.85	108.16	87.85	94.92	135.41	137.03	79.72	108.84	123.52	150.13	162.8	83.96
Merged-chr6-87887839-3	chr6	87887733	87887933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017477)	promoter-TSS (NM_017477)	-107.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	105.39	138.09	114.09	102.16	122.73	160.86	80.05	102.03	142.6	173.73	136.68	98.99
Merged-chr9-90226583-3	chr9	90226491	90226691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 5 of 12)	intron (NM_194334, intron 5 of 12)	44178.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	52.09	42.26	69.03	74.0	50.32	43.27	59.46	62.33	53.3	59.25	67.84	37.59
Merged-chr19-41321373-3	chr19	41321274	41321474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-57370.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	147.39	125.01	148.32	168.92	150.55	226.4	121.24	134.5	150.86	164.19	165.82	91.79
Merged-chr17-46674323-3	chr17	46674214	46674414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-59.0	NM_144857	224823.0	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	68.65	57.6	55.33	61.13	63.0	82.16	38.53	69.7	81.43	70.29	77.38	43.86
Merged-chr8-75093622-3	chr8	75093532	75093732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	14.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	134.06	142.36	117.51	141.17	140.32	185.64	107.96	124.01	162.07	152.64	201.5	78.94
Merged-chr13-112786388-2	chr13	112786291	112786491	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-14386.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.06	7.55	7.99	3.22	42.14	86.55	52.82	45.2	108.38	70.29	90.95	54.2
Merged-chr2-72980509-3	chr2	72980406	72980606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001018042)	promoter-TSS (NM_001018042)	-60.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	114.27	90.8	127.78	135.94	111.28	163.06	88.69	132.39	163.64	188.79	206.52	115.6
Merged-chr5-69556923-3	chr5	69556828	69557028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172711)	promoter-TSS (NM_172711)	4.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	187.36	164.25	144.9	183.81	192.28	225.77	128.88	239.24	255.3	266.12	298.98	179.19
Merged-chr11-95384691-4	chr11	95384650	95384850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-106.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	10.9	16.35	17.68	13.67	22.5	29.79	17.27	7.09	22.82	35.15	18.09	26.31
Merged-chr15-27941242-3	chr15	27941133	27941333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	84615.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	87.62	85.77	106.1	119.05	84.68	89.68	75.73	101.3	131.39	129.04	131.65	78.0
Merged-chr2-132597411-3	chr2	132597313	132597513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	-783.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	51.69	46.28	56.48	83.26	85.09	63.03	76.07	82.09	80.45	67.78	111.05	54.82
Merged-chr1-78537712-3	chr1	78537609	78537809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	26649.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	56.13	61.62	95.84	64.35	122.73	130.13	121.57	162.93	69.43	63.77	102.51	44.17
Merged-chr11-23256438-3	chr11	23256344	23256544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134014, exon 2 of 26)	5' UTR (NM_134014, exon 2 of 26)	403.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	25.04	25.91	47.35	28.96	22.91	25.09	12.62	20.07	54.88	40.67	54.27	32.27
Merged-chr18-77065109-3	chr18	77065026	77065226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164167)	promoter-TSS (NM_001164167)	-82.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	46.03	59.61	70.74	51.08	53.18	52.05	42.52	41.69	58.81	72.3	81.9	41.35
Merged-chr7-73533106-3	chr7	73532991	73533191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8655.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	43.21	29.18	25.67	31.37	33.96	32.3	23.58	33.31	28.13	23.6	38.19	18.8
Merged-chr13-14062697-3	chr13	14062596	14062796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331178, intron 1 of 4)	intron (NM_001331178, intron 1 of 4)	792.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	34.73	34.96	25.1	30.16	18.82	39.82	19.6	26.22	40.12	26.11	28.14	20.68
Merged-chr5-139793619-3	chr5	139793520	139793720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	2084.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	57.34	55.59	85.0	46.25	73.23	75.88	47.83	65.41	44.06	45.69	45.73	28.51
Merged-chr5-92465665-3	chr5	92465561	92465761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7104.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	49.26	31.44	71.88	35.8	81.41	95.33	106.29	79.18	85.95	84.35	103.51	37.59
Merged-chr3-95893871-3	chr3	95893790	95893990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-31.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	88.84	84.51	74.16	95.72	111.28	147.69	71.75	84.87	112.7	98.91	145.22	62.65
Merged-chr14-77794644-3	chr14	77794573	77794773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033440, exon 3 of 3)	3' UTR (NM_001033440, exon 3 of 3)	4295.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	21.4	13.58	12.55	28.15	42.96	28.22	41.52	33.87	55.27	74.81	49.75	34.77
Merged-chr14-76778940-1	chr14	76778840	76779040	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18809.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0.81	0.0	0.0	3.62	3.27	1.88	0.66	1.65	38.35	20.59	38.69	13.47
Merged-chr12-80115523-5	chr12	80115414	80115614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2501.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	42.8	32.7	12.55	14.48	31.5	30.1	10.3	11.86	56.45	76.82	47.74	41.35
Merged-chr11-21224632-3	chr11	21224518	21224718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14414.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	28.67	29.93	31.38	23.33	34.36	50.8	27.57	34.65	54.88	39.67	50.75	21.93
Merged-chr7-43465544-3	chr7	43465448	43465648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290316, intron 4 of 9)	intron (NM_001290316, intron 4 of 9)	2315.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	79.95	91.81	85.57	109.0	114.55	128.88	111.61	116.64	125.29	110.97	167.33	71.74
Merged-chr2-130667747-3	chr2	130667646	130667846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025922)	promoter-TSS (NM_025922)	-95.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	30.28	24.9	20.54	26.55	33.55	29.16	19.93	30.45	37.37	24.1	32.16	15.98
Merged-chr6-124359157-3	chr6	124359063	124359263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2077.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	40.38	44.77	54.76	52.29	39.68	38.26	32.55	45.5	51.73	41.67	52.26	33.83
Merged-chr5-113644655-3	chr5	113644568	113644768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-1065.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	152.63	121.74	161.44	119.86	141.96	205.39	139.84	164.1	198.65	217.41	221.09	95.86
Merged-chr11-94211306-3	chr11	94211208	94211408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-146.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	135.68	127.78	115.23	116.24	195.14	227.65	124.9	135.87	256.28	247.04	233.65	141.28
Merged-chr19-34192249-3	chr19	34192152	34192352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	23.0	NM_029682	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	37.96	28.93	27.95	34.99	34.36	41.39	34.21	34.46	45.43	47.7	38.69	27.88
Merged-chr14-55560640-5	chr14	55560531	55560731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	-292.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	119.93	127.78	111.24	118.65	130.09	199.75	154.46	99.17	154.2	186.28	148.23	93.67
Merged-chr19-21045808-3	chr19	21045694	21045894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58916.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	33.92	22.89	24.53	14.48	41.32	68.99	35.54	38.02	31.27	48.2	46.73	15.35
Merged-chr10-37137158-3	chr10	37137054	37137254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008538, intron 1 of 1)	CpG	1772.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	86.41	100.11	101.54	70.79	89.18	128.56	81.38	114.9	152.04	145.11	186.92	70.48
Merged-chr17-33810440-3	chr17	33810351	33810551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357162)	promoter-TSS (NM_001357162)	-72.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	79.55	65.65	74.16	63.95	77.73	114.77	64.44	84.17	115.26	93.39	93.96	66.73
Merged-chr3-152209782-2	chr3	152209677	152209877	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	306.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	42.8	33.45	42.78	30.16	42.55	80.27	30.89	50.64	69.63	58.24	75.37	33.83
Merged-chr17-35736695-1	chr17	35736595	35736795	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32096.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.66	0.0	23.6	19.08	24.12	15.98
Merged-chr14-57889790-2	chr14	57889668	57889868	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	568.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	16.15	6.29	25.1	14.08	12.27	13.48	13.62	20.27	19.47	16.07	34.67	24.12
Merged-chr15-38661888-3	chr15	38661799	38661999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-5.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	121.14	99.61	90.13	103.77	129.28	144.87	91.01	107.27	182.72	175.74	178.38	105.26
Merged-chrM-5466-2	chrM	5317	5517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											30488.19	29516.3	35788.17	37480.19	28820.11	34573.6	31244.66	29862.04	0.0	0.0	0.0	0.0
Merged-chr17-84103593-3	chr17	84103488	84103688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24928.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	53.7	49.3	74.16	50.27	70.37	99.09	68.76	84.45	87.53	77.83	108.54	44.48
Merged-chr12-100005483-3	chr12	100005387	100005587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	40988.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	38.76	37.48	27.38	43.44	65.46	50.17	54.81	59.16	51.93	38.16	50.25	32.89
Merged-chr4-58613233-3	chr4	58613140	58613340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59749.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	22.61	29.18	63.89	32.98	30.27	33.24	18.93	48.14	49.96	33.14	47.74	27.88
Merged-chr2-145720344-3	chr2	145720235	145720435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19140.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	23.42	14.09	26.81	23.33	31.5	31.36	18.27	23.72	35.4	28.12	32.66	22.24
Merged-chr4-88033418-3	chr4	88033324	88033524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027326)	promoter-TSS (NM_027326)	-17.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	74.3	76.46	91.84	110.6	130.5	113.83	91.68	152.58	132.17	131.55	225.11	72.05
Merged-chr11-46798496-3	chr11	46798367	46798567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12332.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	71.07	62.88	57.62	55.91	52.37	91.56	60.79	35.89	64.71	59.75	41.71	12.22
Merged-chr18-30513775-3	chr18	30513672	30513872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	240907.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	26.25	18.36	31.38	30.16	45.82	35.12	18.6	26.33	28.91	30.13	55.27	21.93
Merged-chr16-49943859-3	chr16	49943747	49943947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11983.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	21.8	13.58	4.56	17.7	28.64	37.32	14.62	24.79	38.55	32.13	18.09	15.35
Merged-chr15-58889518-3	chr15	58889423	58889623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175151)	TTS (NM_175151)	294.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	21.4	33.45	23.39	21.32	13.91	21.95	18.6	21.45	18.49	26.61	26.13	30.39
Merged-chr13-37595367-3	chr13	37595252	37595452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230686.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	61.78	54.08	46.78	36.6	38.05	87.49	48.83	54.5	61.76	35.15	67.33	26.94
Merged-chr2-124385853-1	chr2	124385753	124385953	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-163495.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	6.06	2.52	1.14	7.24	3.27	2.2	7.31	8.72	3.15	3.51	2.51	3.76
Merged-chr15-50871397-3	chr15	50871303	50871503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	17646.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	33.11	17.61	37.08	33.38	36.41	26.65	27.24	40.18	37.96	24.1	35.17	14.41
Merged-chr8-41417115-3	chr8	41417002	41417202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013522)	promoter-TSS (NM_013522)	16.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	50.88	67.66	52.48	51.48	84.28	83.1	50.16	62.52	80.84	91.89	97.98	60.15
Merged-chr6-149375312-3	chr6	149375217	149375417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33667.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	47.24	32.45	45.07	36.2	45.41	48.92	17.94	56.02	58.81	44.19	73.36	26.94
Merged-chr2-119972392-3	chr2	119972311	119972511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-288.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	79.55	82.75	91.27	76.42	91.64	121.67	71.75	80.64	116.83	112.97	132.66	74.87
Merged-chr1-138618106-3	chr1	138618013	138618213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	1644.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	51.69	41.25	41.07	50.27	55.23	46.41	39.86	46.32	60.58	51.72	85.42	35.4
Merged-chr10-60760623-3	chr10	60760540	60760740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7858.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	27.05	20.37	37.08	21.72	27.82	24.15	9.63	26.61	53.11	27.11	36.68	23.81
Merged-chr14-50944538-3	chr14	50944422	50944622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013632, exon 1 of 6)	5' UTR (NM_013632, exon 1 of 6)	219.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	111.85	132.81	95.84	111.41	90.0	94.39	67.43	67.18	129.42	131.05	158.28	68.92
Merged-chr17-28013414-3	chr17	28013302	28013502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67182.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	37.15	22.13	18.83	33.78	38.05	49.23	21.26	29.22	30.09	24.1	47.23	24.43
Merged-chr11-100355468-3	chr11	100355337	100355537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359052, intron 1 of 12)	CpG	691.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	22.61	14.09	31.38	16.89	16.77	19.76	10.63	17.83	13.57	13.05	16.58	13.16
Merged-chr14-66200002-3	chr14	66199907	66200107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	13817.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	35.53	23.9	49.06	43.84	45.82	38.26	27.57	58.18	43.86	39.67	64.32	44.8
Merged-chr15-66814160-3	chr15	66814074	66814274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	17655.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	56.94	54.08	63.32	47.86	59.73	64.28	66.1	56.24	56.25	54.23	77.38	29.45
Merged-chrX-7722159-3	chrX	7722067	7722267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290792)	promoter-TSS (NM_001290792)	-53.0	NM_172372	54636.0	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	26.25	16.85	21.68	16.49	24.14	33.24	22.92	23.07	22.23	30.63	25.63	19.42
Merged-chr6-140623490-3	chr6	140623396	140623596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009637)	promoter-TSS (NM_009637)	-6.0	NM_001005605	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	268.52	268.38	230.46	195.47	228.28	292.25	211.26	235.01	329.85	355.99	354.75	167.6
Merged-chr11-73093095-3	chr11	73092989	73093189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	2494.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	86.41	78.73	73.59	111.01	114.55	107.56	71.75	100.71	73.17	99.42	116.58	38.53
Merged-chr2-79370849-3	chr2	79370748	79370948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	58140.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	32.71	26.16	55.33	36.6	26.59	23.2	25.91	44.24	39.14	34.65	47.23	29.13
Merged-chr8-35394289-3	chr8	35394169	35394369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18528.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	35.13	26.16	54.19	51.48	47.46	60.83	55.8	81.42	59.99	52.22	89.44	52.63
Merged-chr1-43915364-3	chr1	43915276	43915476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18618.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	31.5	31.44	17.11	28.56	47.46	61.15	57.13	39.56	50.16	42.68	52.76	25.37
Merged-chr10-79681945-3	chr10	79681829	79682029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177613)	promoter-TSS (NM_177613)	-266.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	174.44	193.68	192.81	168.12	177.14	265.28	177.38	158.24	249.01	297.25	277.87	119.98
Merged-chr1-171059458-3	chr1	171059364	171059564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010188)	promoter-TSS (NM_010188)	-61.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	68.24	64.64	78.15	42.63	63.82	80.59	54.14	67.71	78.09	61.76	79.39	45.74
Merged-chr10-12573834-3	chr10	12573732	12573932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287903.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	23.82	37.48	38.79	14.88	41.73	48.29	29.9	43.18	53.5	62.26	58.29	20.05
Merged-chr9-31283235-3	chr9	31283141	31283341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	11840.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	48.05	47.04	42.78	39.01	74.87	116.65	52.48	71.58	85.56	79.33	96.98	56.39
Merged-chr9-90067586-3	chr9	90067552	90067752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 7 of 10)	intron (NM_001312649, intron 7 of 10)	13385.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	24.63	15.59	59.33	21.32	15.96	24.15	15.94	47.72	46.42	40.17	60.8	31.64
Merged-chr12-111946875-3	chr12	111946755	111946955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2373.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	28.67	40.24	45.07	54.3	51.55	51.11	28.23	55.07	63.92	49.71	66.33	38.85
Merged-chr4-3678109-3	chr4	3678005	3678205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-16.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	58.15	55.08	92.41	63.55	56.46	80.59	53.48	74.58	88.12	86.86	155.77	68.29
Merged-chr12-85474446-2	chr12	85474341	85474541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010234, intron 1 of 3)	CpG	551.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	170.81	186.13	173.42	129.91	153.0	259.64	80.72	88.07	206.72	228.46	242.2	124.05
Merged-chr5-113647375-3	chr5	113647276	113647476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	3014.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	58.95	43.01	88.42	63.15	79.37	50.8	75.07	109.91	85.17	58.24	113.06	49.5
Merged-chr4-43656540-3	chr4	43656440	43656640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-95.0	NM_026871	68917.0	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	78.74	72.69	99.83	110.2	119.05	124.49	93.01	109.4	106.21	133.56	158.78	71.74
Merged-chr2-129489666-3	chr2	129489577	129489777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46925.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	31.5	36.97	54.76	48.67	60.55	56.13	38.53	47.52	55.86	46.19	62.81	23.81
Merged-chr5-41708324-3	chr5	41708246	41708446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310589)	promoter-TSS (NM_001310589)	-167.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	96.1	111.43	96.98	98.14	92.87	120.73	111.28	110.08	131.39	169.71	137.18	87.09
Merged-chr15-37007472-3	chr15	37007383	37007583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026521)	promoter-TSS (NM_026521)	-81.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	209.97	232.41	191.67	211.56	243.01	287.55	215.91	266.19	310.77	283.19	394.95	174.8
Merged-chr4-53080400-3	chr4	53080294	53080494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 17 of 49)	MIRb|SINE|MIR	68514.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	23.42	19.87	33.66	27.35	43.77	34.49	47.17	77.69	67.27	27.11	98.49	27.88
Merged-chr10-53379868-3	chr10	53379754	53379954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204983)	promoter-TSS (NM_001204983)	-3.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	71.47	74.2	63.32	108.59	80.18	86.23	80.72	104.22	101.29	80.34	159.79	61.09
Merged-chr7-134670770-3	chr7	134670639	134670839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	52.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	30.28	28.93	28.52	20.11	30.68	29.16	33.22	31.09	23.21	40.67	33.67	17.86
Merged-chr1-156459849-3	chr1	156459750	156459950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	14478.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	58.55	45.78	94.7	50.27	73.23	64.28	57.8	104.64	54.29	46.19	55.27	37.59
Merged-chr17-36958590-3	chr17	36958503	36958703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029602)	promoter-TSS (NM_029602)	11.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	115.08	135.07	131.78	137.15	144.0	185.95	97.99	137.5	201.41	169.21	224.61	104.63
Merged-chr1-84350462-3	chr1	84350364	84350564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65819.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	132.85	110.42	188.82	180.59	150.14	149.89	164.76	195.67	150.07	148.62	210.04	112.78
Merged-chr2-91710898-3	chr2	91710806	91711006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145528)	promoter-TSS (NM_145528)	54.0	NM_001356518	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	21.4	25.91	30.23	20.51	45.41	41.71	29.56	31.77	44.45	50.21	71.86	34.77
Merged-chr16-35022362-3	chr16	35022277	35022477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023587)	promoter-TSS (NM_023587)	-44.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	75.51	61.37	51.91	61.94	90.82	69.93	43.51	70.68	77.3	83.85	101.0	56.39
Merged-chr13-81352493-3	chr13	81352392	81352592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	280652.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	107.01	100.36	115.23	134.33	113.73	140.79	124.56	137.13	132.96	129.54	158.78	75.5
Merged-chr3-122566709-3	chr3	122566617	122566817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 5 of 15)	intron (NM_001114665, intron 5 of 15)	-25036.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	31.9	26.91	33.66	36.6	43.36	41.39	38.86	57.95	55.47	52.72	57.79	40.41
Merged-chr8-106412398-3	chr8	106412279	106412479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2960.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	44.42	32.7	92.98	86.88	54.82	45.15	65.11	74.52	68.25	40.67	102.0	48.24
Merged-chr3-95994005-3	chr3	95993909	95994109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1830.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	31.09	19.12	18.25	16.89	32.32	36.06	25.91	34.79	37.37	47.2	32.16	21.3
Merged-chr6-124917315-3	chr6	124917207	124917407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152158, intron 1 of 1)	(CGGGG)n|Simple_repeat|Simple_repeat	444.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	35.94	45.78	31.95	51.48	31.5	44.84	31.89	45.87	40.52	45.69	50.75	33.83
Merged-chr14-62332174-3	chr14	62332122	62332322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026001, intron 1 of 10)	CpG	154.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	27.05	35.97	13.69	26.95	23.32	32.61	29.9	25.49	30.09	30.13	27.64	21.3
Merged-chr10-78185160-3	chr10	78185054	78185254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-5.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	96.91	92.06	100.4	92.91	113.32	147.07	63.44	95.75	120.37	120.51	126.12	79.57
Merged-chr1-193160504-3	chr1	193160415	193160615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016851, intron 2 of 7)	intron (NM_016851, intron 2 of 7)	7403.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	40.38	36.47	51.34	46.25	63.0	55.5	44.18	68.86	86.54	62.26	61.3	42.6
Merged-chr10-127607264-3	chr10	127607162	127607362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 4 of 88)	L1ME3G|LINE|L1	13886.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	27.46	13.83	29.09	25.34	59.32	46.41	88.36	57.5	39.53	35.15	37.18	22.56
Merged-chr15-7114062-3	chr15	7113916	7114116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15556.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	25.44	19.87	30.23	29.76	21.27	27.28	27.9	31.79	35.01	34.65	32.66	38.85
Merged-chr17-34257832-3	chr17	34257740	34257940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5387.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	149.4	175.82	155.16	123.07	156.28	165.57	81.38	84.0	204.75	177.75	187.93	109.96
Merged-chr2-121956402-3	chr2	121956316	121956516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008545)	promoter-TSS (NM_008545)	-324.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	52.9	42.51	50.2	33.38	53.18	52.37	25.24	39.42	71.4	64.27	73.36	61.71
Merged-chr16-91475926-2	chr16	91475838	91476038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-9277.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	77.53	71.18	73.02	71.19	110.46	117.28	64.77	112.4	3.54	2.51	7.03	3.13
Merged-chr9-107985884-3	chr9	107985789	107985989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	27.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	29.07	31.94	18.25	47.46	25.77	22.58	24.58	22.79	23.41	28.62	28.14	17.86
Merged-chr11-63091197-3	chr11	63091096	63091296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	29537.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	17.36	12.32	21.68	20.91	24.55	15.05	21.59	28.96	35.21	20.08	45.73	23.81
Merged-chr12-85255641-3	chr12	85255524	85255724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-9639.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	41.59	18.86	29.09	24.53	31.5	28.54	27.9	11.52	34.81	26.11	23.62	15.35
Merged-chr18-53245878-1	chr18	53245778	53245978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	CpG	216.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	33.92	47.54	66.74	45.45	34.77	44.84	30.23	44.16	39.73	49.71	50.75	41.66
Merged-chr19-55099465-3	chr19	55099360	55099560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	17.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	50.88	39.24	62.18	32.18	49.09	58.32	26.91	59.72	70.81	54.23	61.81	46.36
Merged-chr14-7976357-3	chr14	7976261	7976461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	17821.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	58.55	49.8	72.45	87.68	58.91	59.27	45.84	59.19	70.22	46.7	65.32	51.06
Merged-chr10-19014765-2	chr10	19014651	19014851	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009397, intron 1 of 8)	intron (NM_009397, intron 1 of 8)	659.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	67.43	76.72	33.66	31.37	51.96	83.72	27.57	11.02	60.78	78.33	56.28	30.39
Merged-chr14-70981235-2	chr14	70981129	70981329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91122.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	17.77	13.08	31.95	27.35	37.23	25.09	32.55	47.44	0.79	1.0	4.02	0.63
Merged-chr15-12211682-3	chr15	12211574	12211774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	6646.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	84.39	84.51	74.73	65.56	89.59	129.51	89.69	85.85	102.08	124.02	120.09	41.98
Merged-chr18-3337587-6	chr18	3337513	3337713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110852)	promoter-TSS (NM_001110852)	-24.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	160.31	181.6	160.87	176.57	195.14	207.27	180.37	196.26	175.45	228.46	185.92	115.91
Merged-chr9-63612188-3	chr9	63612087	63612287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9541.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	27.05	16.35	23.39	21.32	35.18	26.34	20.59	25.68	18.69	30.13	30.15	16.6
Merged-chr2-158133254-3	chr2	158133143	158133343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13149.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	203.11	193.68	269.83	228.05	238.51	289.43	237.83	259.23	252.55	237.5	368.32	186.39
Merged-chr17-46857272-2	chr17	46857191	46857391	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25878.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	12.52	21.88	10.84	11.26	12.27	15.99	19.27	13.99	22.23	23.6	24.12	17.23
Merged-chr7-64374064-3	chr7	64373961	64374161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	34.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	77.93	116.71	116.94	102.96	103.91	142.36	92.68	138.9	110.74	117.49	172.85	66.41
Merged-chr8-88137827-3	chr8	88137734	88137934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-51.0	NM_172757	234549.0	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	30.28	30.69	30.23	34.19	41.73	42.33	27.24	41.13	44.65	28.62	55.27	32.58
Merged-chr3-105959297-3	chr3	105959235	105959435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027432)	promoter-TSS (NM_027432)	-163.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	112.26	84.76	71.31	37.81	74.05	113.51	68.1	50.97	109.36	151.13	81.9	79.26
Merged-chr12-100184296-3	chr12	100184174	100184374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3694.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	150.62	141.36	164.86	162.49	201.28	222.64	172.4	219.87	245.86	230.47	320.08	185.45
Merged-chr8-79370818-3	chr8	79370715	79370915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	28653.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	19.79	27.42	43.35	57.51	17.18	26.34	14.28	32.75	28.52	28.12	38.19	25.37
Merged-chr10-95195974-3	chr10	95195869	95196069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	-50144.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	36.34	35.72	50.77	35.39	54.41	57.38	39.2	43.88	59.01	61.26	94.97	41.98
Merged-chr18-82635675-3	chr18	82635587	82635787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177832, intron 13 of 29)	RLTR22_Mur|LTR|ERVK	57047.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	21.0	13.58	32.52	28.96	29.46	26.03	23.92	32.58	28.52	25.61	18.09	20.05
Merged-chr15-78879306-3	chr15	78879219	78879419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2129.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	30.28	42.76	37.65	36.2	56.87	54.56	37.87	43.54	76.31	66.28	60.3	49.18
Merged-chr18-38365086-3	chr18	38364974	38365174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-26081.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	36.34	30.94	39.93	32.98	65.87	50.49	28.23	43.96	50.55	40.17	85.92	31.01
Merged-chr18-83832312-3	chr18	83832216	83832416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	254246.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	50.07	35.97	53.62	50.27	47.46	66.48	46.17	60.22	42.68	52.22	44.72	30.7
Merged-chr8-120564034-3	chr8	120563946	120564146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	25029.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	182.92	186.38	232.18	267.87	207.42	256.5	177.71	196.09	250.97	232.98	326.11	162.27
Merged-chr7-29307939-3	chr7	29307841	29308041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013874, intron 1 of 11)	CpG	3936.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	27.86	16.6	35.94	18.5	31.5	33.24	21.59	40.51	50.16	35.65	63.31	38.22
Merged-chr1-125435647-4	chr1	125435592	125435792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	35.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	157.08	182.11	210.5	173.75	195.14	210.09	202.96	201.03	230.32	257.58	330.63	179.82
Merged-chr11-106613179-3	chr11	106613074	106613274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-244.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	96.91	67.66	78.72	118.25	119.05	117.59	85.04	105.08	128.44	130.55	147.23	85.21
Merged-chr2-26503849-3	chr2	26503737	26503937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	-15.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	66.22	43.26	33.09	33.38	39.27	54.88	29.9	46.74	45.43	76.82	81.4	37.59
Merged-chr9-32695968-3	chr9	32695856	32696056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-86.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	134.06	120.73	147.18	162.49	135.82	140.17	117.59	168.22	162.66	152.14	206.52	106.51
Merged-chr2-122375607-3	chr2	122375503	122375703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6685.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	157.48	165.0	146.61	201.9	162.41	198.18	99.32	102.11	208.29	206.37	214.06	145.98
Merged-chrX-159532571-3	chrX	159532476	159532676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033472)	promoter-TSS (NM_001033472)	-92.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	105.39	100.36	106.68	129.11	132.55	151.14	100.32	127.6	125.68	115.99	155.27	74.24
Merged-chr14-54398087-3	chr14	54397975	54398175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	11397.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	21.8	21.63	39.36	20.51	31.5	34.81	28.23	40.85	33.63	27.11	31.66	20.36
Merged-chr5-137286823-3	chr5	137286729	137286929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	28.27	27.92	23.96	30.57	28.23	28.85	17.94	30.56	29.31	30.13	28.14	19.11
Merged-chr17-62448287-2	chr17	62448200	62448400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	433017.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.04	3.77	4.56	16.49	15.14	32.93	15.28	32.5	13.96	3.51	18.59	10.65
Merged-chr16-76203123-3	chr16	76203034	76203234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80521.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	31.9	18.86	27.38	47.86	51.55	50.17	69.09	73.21	46.81	29.12	64.82	30.7
Merged-chr12-25283946-3	chr12	25283848	25284048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154774.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	55.32	40.75	58.19	54.7	66.68	55.5	45.84	52.35	62.15	58.75	94.47	39.78
Merged-chr11-121702396-3	chr11	121702285	121702485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-42.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	136.48	151.92	143.76	125.89	151.78	182.19	83.71	128.02	164.43	173.23	204.51	87.4
Merged-chr2-32847333-3	chr2	32847223	32847423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009295)	promoter-TSS (NM_009295)	-86.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	132.85	134.82	121.51	106.99	146.46	197.24	96.0	120.73	199.25	190.8	215.06	99.93
Merged-chr17-81665116-3	chr17	81665015	81665215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	73272.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	57.74	49.55	54.76	44.24	36.0	66.48	32.22	44.1	47.6	45.19	53.26	20.36
Merged-chr7-125601929-3	chr7	125601836	125602036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1493.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	39.57	38.48	45.07	37.81	18.0	37.0	23.25	44.02	34.22	39.67	63.82	26.0
Merged-chr10-84409075-3	chr10	84408976	84409176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31395.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	32.71	20.63	22.25	32.18	27.41	28.85	15.61	26.07	26.95	21.09	28.64	20.68
Merged-chr2-60910921-3	chr2	60910804	60911004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-29466.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	61.38	61.62	61.04	52.69	82.23	131.39	65.77	77.58	127.45	119.5	140.19	59.21
Merged-chr12-20815793-3	chr12	20815691	20815891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015521)	promoter-TSS (NR_015521)	-12.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	14.13	13.58	25.67	36.6	47.46	31.04	40.19	50.13	26.95	23.1	48.74	15.35
Merged-chr1-138192206-3	chr1	138192119	138192319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16914.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	64.2	51.31	75.87	70.79	78.96	80.27	65.11	99.73	57.83	56.24	80.4	35.4
Merged-chr18-50111416-3	chr18	50111279	50111479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16822.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	53.7	51.06	71.31	88.48	58.09	86.23	60.12	85.6	34.22	40.67	70.35	37.59
Merged-chr18-67249166-3	chr18	67249063	67249263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3333.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	45.63	43.51	39.36	52.29	53.18	53.62	26.91	51.5	53.7	41.67	61.3	36.03
Merged-chr13-20127707-3	chr13	20127589	20127789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37182.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	111.45	84.01	86.14	69.58	53.18	99.09	44.84	55.46	71.59	59.25	66.33	36.97
Merged-chr14-13361836-3	chr14	13361711	13361911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	77031.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	79.55	97.59	133.49	158.47	136.23	148.95	139.84	166.91	162.46	155.65	223.6	105.57
Merged-chr18-52567536-3	chr18	52567456	52567656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37689.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	44.01	37.73	18.25	19.31	86.73	83.72	48.5	52.07	70.02	66.78	52.76	25.37
Merged-chr17-21534689-3	chr17	21534592	21534792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-847.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	16.15	28.93	40.5	38.61	36.0	39.2	21.59	43.57	42.48	32.13	36.18	29.45
Merged-chr17-78917947-3	chr17	78917860	78918060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	1461.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	90.05	59.61	94.13	120.26	72.41	48.92	120.91	143.97	76.31	44.69	137.68	61.09
Merged-chr4-53122473-1	chr4	53122373	53122573	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37422.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.46	12.58	13.12	7.24	8.59	10.98	12.29	10.29	22.62	23.1	26.63	15.35
Merged-chr1-156040848-3	chr1	156040755	156040955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-6.0	NM_001160181	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	73.89	71.94	79.29	57.51	87.55	77.14	49.16	88.18	100.51	99.92	81.9	70.17
Merged-chr15-103323584-3	chr15	103323496	103323696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356627, intron 2 of 7)	G-rich|Low_complexity|Low_complexity	10742.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	25.04	16.35	20.54	16.49	25.77	21.32	15.28	23.22	24.98	29.12	41.71	21.93
Merged-chr17-36231497-3	chr17	36231384	36231584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	26362.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	104.99	190.91	102.68	92.91	57.68	60.83	47.17	38.16	99.13	125.02	101.5	113.72
Merged-chr6-31113013-3	chr6	31112916	31113116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-49923.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	43.61	58.1	54.19	34.59	55.23	78.08	64.77	59.5	84.38	64.27	128.64	47.93
Merged-chr13-93231231-3	chr13	93231126	93231326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	57.34	86.53	100.97	98.94	58.5	72.44	73.41	88.18	59.6	87.87	106.02	52.32
Merged-chr4-3679016-3	chr4	3678919	3679119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	898.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	107.01	108.91	120.94	141.98	148.91	146.44	97.99	155.24	156.17	135.57	248.73	114.66
Merged-chr4-129081806-3	chr4	129081700	129081900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 7 of 8)	intron (NM_029219, intron 7 of 8)	23529.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	37.96	57.85	63.89	29.36	57.68	87.17	40.52	48.03	54.68	49.71	66.33	29.76
Merged-chr2-152227340-2	chr2	152227228	152227428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007788, intron 1 of 12)	CpG	488.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	32.3	24.9	21.68	20.51	18.41	30.1	23.92	25.6	35.99	25.61	37.18	17.86
Merged-chr10-95361392-2	chr10	95361287	95361487	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045337, intron 2 of 2)	intron (NR_045337, intron 2 of 2)	25111.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	8.08	4.02	14.83	9.65	17.59	35.75	22.26	14.94	25.77	27.62	37.18	17.23
Merged-chr10-98880916-3	chr10	98880815	98881015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-33727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	65.01	64.64	95.84	76.42	96.14	99.72	70.09	101.58	113.88	112.47	111.05	59.21
Merged-chr17-6601695-3	chr17	6601594	6601794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166627)	promoter-TSS (NM_001166627)	23.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	61.38	61.88	39.93	63.95	98.18	90.62	64.77	32.27	39.14	24.6	40.7	11.28
Merged-chr2-73496173-3	chr2	73496067	73496267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-10414.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	161.92	152.17	200.23	167.32	143.19	193.79	194.98	178.18	206.92	199.34	222.6	90.22
Merged-chr11-26602368-3	chr11	26602265	26602465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8445.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	15.75	24.65	31.95	17.7	10.23	21.95	15.94	15.93	25.96	25.61	26.63	17.54
Merged-chr10-86706239-3	chr10	86706165	86706365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	454.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	29.88	22.89	31.38	47.06	49.91	42.96	35.21	40.74	38.75	32.64	40.2	25.69
Merged-chr3-89411975-3	chr3	89411881	89412081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362375)	promoter-TSS (NM_001362375)	-100.0	NR_155545	319945.0	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	151.02	120.73	96.98	110.6	158.32	183.44	76.4	113.86	164.82	188.29	176.37	91.16
Merged-chr6-85961851-5	chr6	85961725	85961925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-158.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	22.21	40.75	33.66	34.19	35.18	61.15	50.82	35.33	45.24	46.7	45.73	45.42
Merged-chr15-101144915-3	chr15	101144825	101145025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001277259, exon 12 of 12)	3' UTR (NM_001277259, exon 12 of 12)	16403.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	24.63	27.92	30.8	23.73	30.27	32.93	18.93	22.85	18.1	27.11	22.11	21.62
Merged-chr3-96226917-3	chr3	96226833	96227033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	5861.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	71.47	49.3	71.31	56.71	75.68	76.83	54.81	74.5	107.98	94.4	134.16	66.73
Merged-chr17-44105798-3	chr17	44105703	44105903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	5.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	119.52	138.09	87.85	112.62	72.82	93.13	78.39	76.01	99.72	96.4	109.04	62.34
Merged-chr5-140207287-3	chr5	140207265	140207465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32447.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	27.46	15.85	22.82	40.62	33.14	25.71	39.53	59.61	29.31	31.13	40.7	23.18
Merged-chr2-103955877-3	chr2	103955790	103955990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-2105.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	26.25	20.63	53.62	34.99	40.09	44.21	24.91	52.18	26.36	26.11	52.26	22.87
Merged-chr11-50377103-2	chr11	50377005	50377205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-614.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	16.15	18.36	13.69	18.5	23.73	30.73	29.9	14.1	22.03	24.1	12.06	19.42
Merged-chr7-82866254-3	chr7	82866177	82866377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1056.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	124.77	120.73	108.39	148.81	127.23	123.23	91.01	160.6	206.52	183.77	311.04	154.13
Merged-chr11-59562976-3	chr11	59562856	59563056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 7 of 9)	MTE2b|LTR|ERVL-MaLR	8782.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	35.13	27.42	27.95	36.2	68.73	60.52	35.87	36.56	40.91	52.22	51.25	27.88
Merged-chrUn_GL456359-19543-1	chrUn_GL456359	19443	19643	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	164.63	162.18	172.85	104.0
Merged-chr1-93071580-3	chr1	93071489	93071689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	10891.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	194.63	210.28	189.39	202.71	190.64	259.95	238.83	207.11	232.88	273.15	253.75	148.18
Merged-chr8-11103942-3	chr8	11103838	11104038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95508.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	44.82	37.23	67.88	61.54	57.27	89.68	97.99	138.31	40.71	25.11	62.31	36.03
Merged-chr17-83861836-3	chr17	83861713	83861913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7395.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	72.68	79.99	69.03	94.92	38.05	55.82	72.75	50.75	55.66	52.22	58.79	49.81
Merged-chr4-141210690-1	chr4	141210590	141210790	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-3266.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.81	1.01	0.0	0.0	0.41	1.88	0.66	0.0	7.87	2.51	8.54	12.53
Merged-chr4-129820032-3	chr4	129819913	129820113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-466.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	155.87	150.41	136.34	117.84	159.96	209.15	126.89	151.57	201.21	227.45	259.28	122.49
Merged-chr8-115614353-3	chr8	115614262	115614462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92532.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	43.21	44.27	77.01	57.11	89.18	62.09	57.13	77.24	72.77	60.25	103.01	50.12
Merged-chr4-9110543-3	chr4	9110435	9110635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-158758.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	40.78	34.21	62.75	37.0	69.96	55.82	38.53	65.66	83.4	41.67	77.88	41.66
Merged-chr8-83573286-3	chr8	83573183	83573383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027179, exon 4 of 12)	exon (NM_027179, exon 4 of 12)	6525.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	13.73	14.84	23.39	14.48	20.46	27.59	21.92	20.41	16.52	6.03	22.61	14.72
Merged-chr11-3160594-2	chr11	3160477	3160677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	MTD|LTR|ERVL-MaLR	32886.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	18.98	17.86	12.55	18.1	32.73	14.74	32.55	19.35	1.18	1.51	1.0	0.63
Merged-chr17-68213989-1	chr17	68213889	68214089	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59808.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	3.23	4.53	6.28	9.25	4.09	6.27	7.31	9.25	3.34	2.51	9.04	4.7
Merged-chr6-116664252-3	chr6	116664158	116664358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	9578.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	199.48	163.74	220.77	213.17	225.42	241.76	155.79	201.37	195.11	204.86	281.39	106.2
Merged-chr7-28766614-3	chr7	28766523	28766723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122765)	promoter-TSS (NM_001122765)	21.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	228.95	249.77	231.61	238.91	261.83	325.49	270.72	218.86	334.37	393.65	345.21	215.21
Merged-chr17-26123453-3	chr17	26123358	26123558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-45.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	48.86	48.8	53.62	47.86	59.32	71.18	30.56	37.85	66.48	58.75	46.23	27.88
Merged-chr3-9725560-6	chr3	9725446	9725646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	108133.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	18.17	14.34	17.11	11.66	32.32	41.08	29.56	29.52	31.67	24.1	36.68	13.78
Merged-chr17-25833006-3	chr17	25832900	25833100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	361.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	157.08	147.14	131.78	136.35	141.55	182.19	100.65	132.53	187.44	247.04	233.65	122.49
Merged-chr8-45975855-3	chr8	45975774	45975974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033148)	promoter-TSS (NM_001033148)	346.0	NM_138668	192169.0	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	11.31	14.84	21.68	22.52	26.59	10.35	16.28	23.05	37.17	26.61	27.64	14.1
Merged-chr16-29579324-3	chr16	29579227	29579427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	-7.0	NM_133752	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	89.24	85.02	83.29	68.78	97.78	122.29	73.74	86.8	106.01	126.53	159.29	62.03
Merged-chr17-5454415-3	chr17	5454305	5454505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14145.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	54.11	60.62	76.44	56.31	29.46	28.85	34.88	39.31	71.4	47.7	58.79	41.66
Merged-chr19-8020128-3	chr19	8020054	8020254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54127.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	45.23	48.54	38.22	47.46	69.55	63.66	51.82	39.48	63.33	80.34	50.25	38.85
Merged-chr13-49200821-3	chr13	49200730	49200930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	174.44	185.38	192.24	159.67	196.37	280.65	201.96	202.99	213.6	261.09	252.75	165.4
Merged-chr1-63730597-3	chr1	63730456	63730656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172422)	promoter-TSS (NM_172422)	-69.0	NM_172422	75619.0	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	34.32	42.76	57.62	20.91	23.73	48.29	21.92	24.34	43.07	35.65	35.68	32.58
Merged-chrUn_JH584304-24645-1	chrUn_JH584304	24545	24745	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	35044.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	16.13	25.11	24.62	24.12
Merged-chr8-57576389-3	chr8	57576229	57576429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 2 of 11)	Tigger9a|DNA|TcMar-Tigger	64486.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	81.57	100.11	110.1	90.49	84.28	101.28	62.45	81.9	149.09	132.56	159.79	61.4
Merged-chr5-120588807-3	chr5	120588736	120588936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145853)	promoter-TSS (NM_145853)	-187.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	163.13	185.63	191.67	135.54	220.1	279.71	134.2	175.46	251.96	280.68	283.9	146.3
Merged-chr12-102442812-3	chr12	102442690	102442890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2977.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	32.71	25.91	38.79	44.64	55.23	65.54	43.18	97.46	54.09	35.15	74.37	27.25
Merged-chr10-80102667-3	chr10	80102554	80102754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	48.0	NM_183426	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	38.76	34.71	36.51	27.75	38.46	45.47	26.57	33.59	38.16	30.63	51.25	26.31
Merged-chr19-29486759-3	chr19	29486649	29486849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35238.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	161.52	155.19	188.25	115.43	193.92	229.85	207.94	187.68	218.13	225.95	197.48	111.52
Merged-chr12-44265994-3	chr12	44265884	44266084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-3170.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	28.27	25.15	23.39	16.49	47.87	44.53	41.19	55.21	67.07	48.2	68.84	27.57
Merged-chr9-107968275-3	chr9	107968186	107968386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-7281.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	20.19	21.13	18.83	32.98	25.77	31.36	21.59	30.73	20.46	23.1	35.17	29.45
Merged-chr3-152402495-3	chr3	152402386	152402586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	5802.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	75.51	57.1	90.13	79.23	98.59	84.35	101.98	112.65	100.11	94.9	94.97	70.48
Merged-chr4-141273023-3	chr4	141272929	141273129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5410.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	65.01	35.72	67.88	38.21	67.91	84.98	64.77	84.03	63.33	58.24	73.86	36.97
Merged-chr5-145167105-3	chr5	145166999	145167199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	5.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	121.95	128.53	86.14	91.7	97.37	146.44	68.76	98.64	130.4	134.56	103.01	109.02
Merged-chr7-112316712-1	chr7	112316612	112316812	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 8 of 25)	intron (NM_001193305, intron 8 of 25)	-51596.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	4.04	1.01	9.13	6.03	4.91	2.82	7.64	10.04	1.18	0.0	1.0	0.94
Merged-chr11-114982061-1	chr11	114981961	114982161	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_145437)	TTS (NM_145437)	7825.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.81	2.52	0.0	0.8	89.18	95.33	64.11	69.14	7.28	1.51	4.02	3.13
Merged-chr5-53378806-3	chr5	53378710	53378910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111704.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	26.65	31.44	48.49	44.24	34.77	46.41	48.83	76.07	65.1	56.74	70.35	48.56
Merged-chr17-74804030-1	chr17	74803930	74804130	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	MER20|DNA|hAT-Charlie	86280.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	2.83	4.28	3.42	8.45	1.64	3.76	3.32	1.23	48.98	37.66	58.29	22.87
Merged-chr19-42072351-2	chr19	42072255	42072455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	14015.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	30.28	20.12	21.68	36.6	37.64	30.1	25.91	30.22	0.39	0.5	0.0	2.82
Merged-chr1-36571793-3	chr1	36571677	36571877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13396.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	118.31	91.56	204.22	168.52	163.23	164.63	175.05	240.25	191.97	133.56	289.43	98.37
Merged-chr8-8452381-3	chr8	8452282	8452482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	208391.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	41.99	50.56	56.48	62.34	139.91	176.54	135.53	186.45	172.69	178.75	229.63	112.78
Merged-chr13-58215664-3	chr13	58215555	58215755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152234)	promoter-TSS (NM_152234)	-2.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	57.74	39.24	60.47	51.08	60.55	74.63	27.57	47.66	89.69	73.31	101.0	61.09
Merged-chr6-56704738-3	chr6	56704651	56704851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025520)	promoter-TSS (NM_025520)	-52.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	58.55	52.07	43.35	40.62	63.82	63.97	47.83	63.53	75.33	64.77	62.31	53.88
Merged-chr5-140842108-2	chr5	140842035	140842235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11704.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	24.63	20.63	59.33	86.07	49.09	37.63	71.75	85.51	3.34	2.51	10.05	5.01
Merged-chr18-38338428-3	chr18	38338312	38338512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	581.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	31.9	30.43	24.53	39.01	20.86	34.18	27.9	24.28	30.68	34.14	48.24	27.57
Merged-chr6-145121058-3	chr6	145121010	145121210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	-629.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	42.4	37.23	32.52	32.18	34.36	43.59	54.48	41.27	24.39	36.65	36.18	30.07
Merged-chr3-137951971-1	chr3	137951871	137952071	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29578.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	9.69	13.58	20.54	7.24	24.14	17.87	13.29	23.75	28.52	11.55	21.61	13.16
Merged-chr4-95161410-3	chr4	95161252	95161452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-109130.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	86.82	77.97	91.84	70.79	83.05	85.92	69.76	100.85	124.5	122.01	157.28	85.84
Merged-chr2-68825587-3	chr2	68825501	68825701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35840.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	32.71	23.39	26.24	35.8	31.5	41.39	38.53	40.6	29.9	41.17	49.75	22.24
Merged-chr16-13819258-3	chr16	13819173	13819373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	22.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	161.11	161.98	198.52	185.41	210.28	206.96	139.51	204.03	230.52	251.05	323.1	150.99
Merged-chr11-96880482-2	chr11	96880394	96880594	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	30101.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	6.86	1.51	0.0	0.0	45.41	21.01	35.87	62.27	89.3	93.39	62.31	61.4
Merged-chr2-19351995-3	chr2	19351871	19352071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126563, exon 4 of 4)	non-coding (NR_126563, exon 4 of 4)	7654.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	33.11	31.69	43.35	44.64	47.87	62.71	38.2	41.72	41.7	48.7	67.33	31.01
Merged-chr13-95019525-3	chr13	95019418	95019618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	43174.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	20.19	17.86	18.25	37.4	24.14	15.68	17.27	34.96	24.59	23.1	30.15	18.17
Merged-chr8-26169327-3	chr8	26169225	26169425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11156.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	20.19	25.4	18.83	23.33	29.05	38.88	19.27	27.76	25.37	26.61	41.2	19.11
Merged-chr4-43262949-3	chr4	43262768	43262968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 38 of 39)	intron (NM_001081413, intron 38 of 39)	-4291.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	25.44	34.96	34.8	44.24	24.55	28.85	32.88	25.15	12.39	19.08	37.18	17.23
Merged-chr2-30982105-3	chr2	30981999	30982199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144885)	promoter-TSS (NM_144885)	-158.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	237.03	245.49	286.94	213.97	285.55	370.96	212.26	211.77	300.93	376.58	417.56	212.08
Merged-chr18-36749278-3	chr18	36749173	36749373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011879, exon 7 of 20)	exon (NM_011879, exon 7 of 20)	4617.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	107.41	88.79	96.41	119.86	109.23	112.26	69.76	105.45	110.15	111.97	112.05	70.17
Merged-chr15-82244551-3	chr15	82244433	82244633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080158)	promoter-TSS (NM_001080158)	-197.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	45.23	43.51	49.63	57.11	62.18	75.88	59.13	48.84	55.66	77.83	69.85	52.63
Merged-chr6-54082735-3	chr6	54082605	54082805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	42773.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	105.39	116.96	127.21	131.52	104.32	113.2	96.99	95.97	103.06	113.48	116.58	66.1
Merged-chr16-57189705-3	chr16	57189613	57189813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 10 of 17)	intron (NM_026254, intron 10 of 17)	11758.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	32.71	28.67	24.53	38.21	56.46	67.42	40.86	51.28	47.4	51.72	77.88	29.45
Merged-chr4-141735103-3	chr4	141735001	141735201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11574.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	39.98	25.4	54.76	37.81	43.36	27.91	24.58	32.41	56.84	79.33	79.89	35.09
Merged-chr1-37474828-3	chr1	37474741	37474941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13764.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	59.36	60.37	70.17	60.73	47.05	65.22	48.5	63.7	70.02	65.78	71.35	42.92
Merged-chr7-47080965-3	chr7	47080860	47081060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	2264.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	56.53	54.83	112.95	77.22	65.87	59.27	63.78	89.05	84.58	72.3	89.94	84.9
Merged-chr7-125444900-3	chr7	125444767	125444967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029842, intron 1 of 7)	CpG	247.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	40.78	43.51	53.05	45.45	49.91	70.87	41.19	30.39	63.33	74.81	70.35	43.54
Merged-chr13-95888373-3	chr13	95888254	95888454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	B1F|SINE|Alu	3568.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	77.12	75.21	74.16	97.33	126.41	155.85	92.68	143.69	119.19	143.6	126.63	78.94
Merged-chr4-139352487-3	chr4	139352371	139352571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	105.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	58.15	61.62	62.75	74.81	72.41	86.23	64.11	61.54	78.68	61.26	77.88	28.82
Merged-chr18-38418871-3	chr18	38418791	38418991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-16.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	77.53	78.48	62.75	79.64	74.87	79.65	65.11	74.24	99.52	67.78	112.05	48.87
Merged-chr11-107012384-3	chr11	107012281	107012481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12856.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	34.73	26.66	26.24	30.57	47.46	65.54	19.93	32.83	40.71	33.64	38.19	19.74
Merged-chr11-97315733-3	chr11	97315623	97315823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	7.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	72.28	79.99	62.18	62.74	65.87	99.4	40.86	38.19	75.72	87.37	52.26	72.36
Merged-chr13-107756493-3	chr13	107756397	107756597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	69100.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	134.46	106.65	138.62	199.09	116.59	123.86	165.75	172.6	99.72	117.99	142.2	67.35
Merged-chr18-35730479-3	chr18	35730373	35730573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	3484.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	49.26	54.58	55.9	80.84	62.18	58.64	50.82	90.25	69.04	65.27	129.64	58.58
Merged-chr10-62183251-3	chr10	62183148	62183348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10979.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	45.23	23.9	34.8	23.33	22.5	34.49	20.26	32.72	36.19	44.19	44.72	25.69
Merged-chr7-132859267-3	chr7	132859187	132859387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	62.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	23.42	26.16	30.23	28.56	36.82	26.97	30.23	23.97	43.86	37.66	40.7	26.31
Merged-chr15-31565307-3	chr15	31565202	31565402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3531.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	20.59	21.38	23.96	25.74	45.82	39.82	35.54	60.42	36.78	41.17	48.24	25.37
Merged-chr8-92818344-3	chr8	92818243	92818443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8954.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	51.28	39.24	51.34	45.45	60.14	68.05	45.84	75.45	71.4	53.73	81.9	40.41
Merged-chr8-72240007-3	chr8	72239875	72240075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-43.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	128.0	105.14	156.88	120.66	123.96	131.07	54.81	86.44	142.8	174.73	140.7	90.85
Merged-chr5-86804687-3	chr5	86804584	86804784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177680, intron 1 of 16)	CpG	418.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	46.03	49.55	41.07	53.49	45.41	68.05	65.44	62.13	68.64	75.82	111.55	51.06
Merged-chr15-8994780-7	chr15	8994688	8994888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	26839.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	11.31	9.81	12.55	10.46	13.09	6.27	7.97	10.71	18.69	11.55	18.09	17.23
Merged-chr4-150132853-1	chr4	150132753	150132953	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019741, intron 6 of 13)	intron (NM_019741, intron 6 of 13)	13509.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	4.04	4.02	2.28	0.4	6.55	6.9	4.98	3.14	11.8	8.03	8.04	8.14
Merged-chr9-118040930-3	chr9	118040848	118041048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001048146, exon 1 of 7)	5' UTR (NM_001048146, exon 1 of 7)	426.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	69.45	76.72	71.31	82.45	77.73	73.06	56.14	70.93	107.0	92.39	141.2	65.47
Merged-chr10-29231831-3	chr10	29231732	29231932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20189.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	23.02	16.6	27.95	16.49	30.27	41.08	24.58	31.43	33.04	36.65	29.65	18.8
Merged-chr3-79568090-3	chr3	79567923	79568123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162999)	promoter-TSS (NM_001162999)	-169.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	107.81	129.79	94.13	104.17	115.37	121.04	127.22	97.09	136.7	122.51	116.07	87.71
Merged-chr5-130222320-3	chr5	130222211	130222411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-24.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	50.07	49.55	34.8	39.01	54.41	61.46	25.91	43.85	104.64	74.81	78.89	42.29
Merged-chr1-36262309-3	chr1	36262213	36262413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	11112.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	130.43	104.64	155.73	158.47	112.5	106.3	72.75	132.45	84.18	79.33	128.64	68.61
Merged-chr13-20151750-3	chr13	20151656	20151856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	61249.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	18.98	18.11	46.21	28.15	33.55	29.16	37.2	35.89	24.19	24.1	27.13	26.0
Merged-chr1-186706467-1	chr1	186706367	186706567	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	-478.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	3.63	5.53	2.28	6.03	5.32	0.63	5.31	5.72	2.75	3.51	4.02	2.19
Merged-chr11-93886062-1	chr11	93885962	93886162	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-145.0	NM_001346525	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	38.76	51.31	46.78	49.47	50.73	77.14	41.19	46.43	45.24	66.78	75.37	49.18
Merged-chr19-5846749-3	chr19	5846635	5846835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	123.16	111.93	166.57	131.52	136.64	206.33	91.68	148.18	168.56	162.68	189.94	111.52
Merged-chr3-95950875-2	chr3	95950787	95950987	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21630.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	18.98	29.68	15.97	20.51	22.09	29.16	18.93	18.36	25.57	32.13	20.6	23.81
Merged-chr11-115071974-3	chr11	115071932	115072132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9993.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	39.57	42.01	58.19	63.95	49.91	60.83	68.43	36.93	47.21	68.29	70.85	46.05
Merged-chr14-45251801-3	chr14	45251702	45251902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 3 of 6)	Lx7|LINE|L1	32085.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	37.15	27.42	35.94	39.82	38.86	22.89	28.57	43.4	26.16	27.11	39.7	22.24
Merged-chr16-18412189-3	chr16	18412045	18412245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	1349.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	35.94	34.21	39.93	43.04	29.05	31.04	45.84	41.78	22.23	27.62	23.62	21.93
Merged-chr2-129607125-3	chr2	129607040	129607240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	11678.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	18.17	12.58	22.25	19.71	18.41	21.32	14.28	21.84	25.37	19.58	24.62	17.23
Merged-chr3-65929561-3	chr3	65929483	65929683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28666.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	87.62	73.95	67.31	43.44	105.96	139.85	71.42	63.14	120.18	138.58	141.7	60.46
Merged-chr9-115314770-1	chr9	115314670	115314870	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-4349.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.0	0.75	1.14	0.0	0.0	0.0	0.0	0.03	20.65	20.59	22.61	14.41
Merged-chr9-114933999-3	chr9	114933890	114934090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-3.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	121.14	95.08	132.92	96.53	117.41	127.62	84.04	133.6	160.3	128.54	290.94	117.79
Merged-chr2-19627282-3	chr2	19627241	19627441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30556.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	67.03	79.99	87.28	81.24	71.59	85.29	65.77	66.81	83.59	102.43	132.15	72.68
Merged-chr7-100372040-3	chr7	100371935	100372135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	-139.0	NM_028292	72590.0	Mm.177502	NM_028292	ENSMUSG00000030718	Ppme1	1110069N17Rik|2700017M01Rik|PME-1|Pme1	protein phosphatase methylesterase 1	protein-coding	190.19	237.69	197.95	233.68	219.28	249.6	153.8	162.84	249.6	254.07	234.16	166.03
Merged-chr1-67398211-2	chr1	67398124	67398324	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	275197.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	4.85	2.52	10.27	5.63	71.18	46.41	52.82	73.57	49.76	57.74	65.32	30.7
Merged-chr7-143287460-3	chr7	143287373	143287573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	9074.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	19.38	24.9	33.09	32.18	16.36	19.44	16.94	37.43	36.58	21.09	42.71	31.01
Merged-chr7-4498368-3	chr7	4498217	4498417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	3363.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	39.17	25.15	36.51	34.99	23.32	32.93	32.88	25.65	41.11	31.13	58.79	26.94
Merged-chr1-58423094-3	chr1	58422987	58423187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042634, intron 1 of 12)	intron (NM_001042634, intron 1 of 12)	1001.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	41.19	36.22	31.95	32.18	44.59	58.64	24.58	49.04	68.25	61.26	50.75	39.16
Merged-chr2-91984751-3	chr2	91984682	91984882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011957, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	-21219.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	42.8	41.25	41.07	52.69	61.77	58.32	62.12	78.93	45.63	63.27	60.3	42.29
Merged-chr16-36663698-3	chr16	36663599	36663799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	2378.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	67.03	57.85	59.33	78.43	67.09	98.15	45.51	66.22	94.02	77.32	96.48	46.05
Merged-chr11-86757036-3	chr11	86756958	86757158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	509.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	29.88	17.1	13.69	14.08	15.55	27.28	14.62	20.86	40.52	36.65	37.69	31.01
Merged-chr8-119798371-3	chr8	119798265	119798465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19949.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	38.76	26.91	25.1	43.04	45.0	50.49	22.92	36.84	76.51	72.3	70.35	46.05
Merged-chr18-17728817-3	chr18	17728723	17728923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147833.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	20.19	23.9	37.65	47.46	120.28	110.06	67.76	123.03	69.43	88.87	57.28	37.91
Merged-chr3-122293186-3	chr3	122293097	122293297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030439)	TTS (NR_030439)	506.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	47.24	100.86	57.05	89.29	63.0	59.89	99.65	65.66	71.0	99.42	78.39	63.59
Merged-chr17-34972287-4	chr17	34972156	34972356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-100.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	86.01	115.45	99.26	124.28	95.32	153.96	97.33	36.36	105.82	139.59	130.14	88.03
Merged-chr8-94666674-3	chr8	94666584	94666784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024191)	promoter-TSS (NM_024191)	84.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	38.36	33.2	25.1	41.43	50.32	57.07	50.82	48.25	48.19	46.7	81.9	18.8
Merged-chr5-34369782-3	chr5	34369696	34369896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-137.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	124.37	148.9	147.18	119.45	167.73	200.06	107.29	136.68	192.95	172.22	253.25	104.63
Merged-chr5-121397878-3	chr5	121397832	121398032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172722)	promoter-TSS (NM_172722)	-50.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	39.98	34.46	43.35	26.55	38.05	58.95	22.26	26.94	70.02	63.77	75.87	41.98
Merged-chr11-119267923-3	chr11	119267827	119268027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-36.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	46.44	41.75	46.21	25.34	53.59	60.83	30.56	39.9	74.35	42.68	47.74	44.17
Merged-chr9-7734542-3	chr9	7734472	7734672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29505.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	65.41	89.8	55.33	26.55	45.82	116.96	45.18	22.51	87.53	91.38	67.33	26.31
Merged-chr4-125124941-3	chr4	125124822	125125022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2959.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	100.95	102.12	107.82	55.1	68.73	108.81	53.81	46.01	117.62	128.54	127.63	47.62
Merged-chr17-69201551-3	chr17	69201434	69201634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	B4A|SINE|B4	42178.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	29.07	20.63	24.53	30.57	31.09	23.83	24.58	30.95	33.04	31.13	45.22	25.69
Merged-chr11-69097644-3	chr11	69097550	69097750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1299.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	31.9	29.68	45.64	36.6	40.91	66.48	30.23	41.22	46.81	43.68	46.23	33.52
Merged-chr2-172440494-3	chr2	172440381	172440581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-97.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	127.6	122.24	155.73	146.4	292.51	278.45	204.95	288.67	160.89	122.51	190.94	70.48
Merged-chr12-80463181-3	chr12	80463137	80463337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133798, exon 1 of 9)	5' UTR (NM_133798, exon 1 of 9)	142.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	8.08	10.31	4.56	14.88	11.86	15.37	18.93	12.9	14.36	22.59	17.59	13.78
Merged-chr10-53927685-1	chr10	53927585	53927785	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 8 of 12)	MTD|LTR|ERVL-MaLR	148111.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	17.36	18.36	11.41	31.37	29.46	42.96	26.24	40.51	13.77	11.55	16.08	11.59
Merged-chr1-191071326-2	chr1	191071243	191071443	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8322.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	14.54	11.32	10.84	13.27	13.09	23.2	5.98	8.78	23.6	20.08	17.08	16.6
Merged-chr7-39655333-1	chr7	39655233	39655433	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	137567.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	28.32	33.64	38.19	19.74
Merged-chr2-90917731-3	chr2	90917626	90917826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025576, exon 1 of 5)	exon (NM_025576, exon 1 of 5)	324.0	NM_025576	66461.0	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	19.79	20.12	35.94	16.09	24.55	21.64	15.94	24.0	24.0	22.59	31.66	13.16
Merged-chr19-41345661-3	chr19	41345556	41345756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39414.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	29.88	23.14	34.8	44.24	41.73	32.61	28.23	39.5	40.71	31.63	34.67	33.21
Merged-chr7-63937364-1	chr7	63937264	63937464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	CpG	1551.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	41.59	45.78	26.24	47.06	38.86	41.71	46.5	45.22	46.62	30.63	66.33	33.83
Merged-chr10-121473999-5	chr10	121473881	121474081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	B1_Mur2|SINE|Alu	2269.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	8.88	9.81	10.27	12.07	18.0	6.9	16.61	15.28	13.37	12.55	29.65	8.77
Merged-chr4-134469056-3	chr4	134468962	134469162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019641, intron 1 of 4)	CpG	742.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	42.8	47.04	48.49	37.0	64.23	58.64	33.22	37.74	73.17	79.33	78.89	50.44
Merged-chr4-149782594-3	chr4	149782502	149782702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8335.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	36.34	21.88	42.21	41.02	35.59	29.48	30.89	43.54	33.24	38.66	47.74	30.7
Merged-chr17-62627749-3	chr17	62627641	62627841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	253576.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	23.02	30.18	51.34	33.38	91.23	63.66	48.16	85.35	59.4	67.78	72.86	37.59
Merged-chr3-22076210-3	chr3	22076084	22076284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-468.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	52.9	59.36	64.46	44.64	69.14	68.05	43.18	53.3	83.0	77.83	91.95	63.91
Merged-chr5-43279935-3	chr5	43279836	43280036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177379, intron 7 of 10)	intron (NM_001177379, intron 7 of 10)	-44582.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	41.19	27.92	39.36	56.31	16.36	28.85	30.89	58.57	83.2	56.24	67.84	68.92
Merged-chr15-36792586-3	chr15	36792501	36792701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253806, intron 1 of 5)	CpG	-1669.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	139.71	132.3	154.59	152.43	160.78	175.91	152.13	157.88	216.55	226.95	303.5	150.05
Merged-chr4-62502266-3	chr4	62502164	62502364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-64.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	113.47	114.7	152.31	156.86	145.64	152.4	116.26	145.29	51.93	36.65	78.89	27.25
Merged-chr2-164458524-3	chr2	164458431	164458631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-2440.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	60.97	35.21	59.33	32.58	58.09	92.82	53.81	24.36	57.43	61.76	50.25	42.92
Merged-chr9-124126583-3	chr9	124126493	124126693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	5050.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	27.46	15.59	41.64	14.08	25.77	16.93	16.94	24.59	27.34	20.59	29.14	19.11
Merged-chr3-19627249-3	chr3	19627158	19627358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17202.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	87.22	64.14	91.84	63.15	87.55	82.16	82.71	113.78	106.41	83.85	97.48	77.38
Merged-chr6-34995479-3	chr6	34995374	34995574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR52|LTR|ERVL	-17475.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	34.32	49.3	25.1	37.81	38.46	42.33	25.24	51.67	31.47	26.11	38.19	25.69
Merged-chr13-92722577-1	chr13	92722477	92722677	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72241.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	3.23	3.52	4.56	0.4	2.45	0.63	1.0	2.78	30.88	19.58	44.22	30.07
Merged-chr6-136808202-3	chr6	136808090	136808290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-58.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	84.8	69.92	94.7	84.86	110.87	120.41	80.39	103.12	189.61	186.28	214.56	95.86
Merged-chr4-124705279-3	chr4	124705126	124705326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	4527.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	22.61	21.63	33.66	17.29	39.68	36.69	24.25	18.5	48.58	42.18	47.23	20.68
Merged-chr9-124053733-3	chr9	124053630	124053830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31759.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	41.59	26.66	42.21	30.16	33.96	26.65	46.17	50.78	29.5	24.1	46.23	24.12
Merged-chr17-71669709-3	chr17	71669603	71669803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3558.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	45.63	39.24	33.66	25.74	22.5	32.61	21.26	32.8	46.81	48.2	56.28	25.06
Merged-chr6-128143660-3	chr6	128143562	128143762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-84.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	54.11	39.49	49.63	48.67	72.82	74.32	56.8	65.66	61.37	72.81	81.4	47.3
Merged-chr5-129006410-3	chr5	129006307	129006507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152615, intron 1 of 11)	B3|SINE|B2	2165.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	20.59	18.61	35.37	24.53	34.36	29.48	40.19	44.66	44.45	41.67	55.27	32.58
Merged-chr15-25680878-3	chr15	25680786	25680986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 2 of 40)	ORR1D2|LTR|ERVL-MaLR	58336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	29.88	26.66	45.07	54.3	21.68	40.76	50.49	55.77	37.76	19.58	45.22	26.63
Merged-chr6-124730357-2	chr6	124730263	124730463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	2791.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	29.88	20.37	46.21	39.01	41.32	38.57	34.88	39.67	66.48	85.86	104.52	40.1
Merged-chr12-31997061-3	chr12	31996973	31997173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	MamRep605|LTR?|LTR?	-46828.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	42.8	36.97	52.48	47.46	57.27	35.75	27.24	56.78	58.81	68.29	82.41	44.17
Merged-chr10-66928316-3	chr10	66928217	66928417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7933.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	28.27	34.21	48.49	41.83	78.96	61.77	38.53	49.96	73.56	70.29	72.36	47.93
Merged-chr6-42396241-3	chr6	42396147	42396347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3991.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	29.88	27.92	44.5	30.16	49.5	49.54	40.52	65.27	66.28	52.22	81.4	42.29
Merged-chr19-46760936-1	chr19	46760836	46761036	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-673.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	19.38	11.57	17.11	8.85	18.82	24.46	8.3	16.12	20.85	15.57	16.08	17.54
Merged-chr9-44268655-3	chr9	44268531	44268731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-32.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	30.28	28.42	44.5	16.49	40.5	39.2	24.91	29.92	32.45	40.17	21.1	16.29
Merged-chr8-71464809-3	chr8	71464712	71464912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053162)	promoter-TSS (NM_053162)	-114.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	164.75	159.72	179.69	158.87	185.73	206.96	153.8	139.63	203.57	227.96	194.46	135.96
Merged-chr11-106193681-3	chr11	106193559	106193759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-56.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	136.48	134.32	134.06	104.57	119.87	160.55	94.67	88.4	146.34	150.13	178.38	98.37
Merged-chr2-32969581-3	chr2	32969490	32969690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	6289.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	43.61	51.06	46.78	57.11	51.96	55.5	48.16	76.63	66.48	51.21	68.84	49.5
Merged-chr13-98944756-3	chr13	98944680	98944880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18396.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	17.36	28.93	23.39	24.53	27.0	26.03	20.26	20.89	22.23	35.15	32.66	14.1
Merged-chr16-20301926-3	chr16	20301828	20302028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005767, intron 1 of 9)	intron (NM_001005767, intron 1 of 9)	434.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	31.09	15.85	26.24	23.73	36.0	39.51	21.59	43.71	27.54	33.64	36.68	16.92
Merged-chr8-3308505-3	chr8	3308405	3308605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-28888.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	50.07	57.85	42.78	45.45	42.14	56.44	43.51	27.7	59.79	55.73	49.24	35.09
Merged-chr4-3679750-3	chr4	3679654	3679854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	1633.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	14.54	22.64	26.81	26.95	18.0	28.22	28.9	13.93	29.11	31.63	37.18	18.17
Merged-chrX-139684965-3	chrX	139684844	139685044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081499)	promoter-TSS (NM_001081499)	-52.0	NM_001081499	245638.0	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	52.49	43.77	59.33	86.88	81.82	77.45	60.12	96.06	81.04	72.81	108.54	67.35
Merged-chr18-38352252-3	chr18	38352153	38352353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-13260.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	26.25	26.91	25.1	21.32	55.64	37.63	24.58	34.74	47.99	45.69	54.27	33.21
Merged-chr15-79546746-3	chr15	79546640	79546840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	1.0	NM_001040187	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	77.12	87.03	77.01	70.79	86.32	100.34	60.79	54.36	104.24	125.02	92.96	77.06
Merged-chr1-72226027-3	chr1	72225925	72226125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13711.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	27.86	16.1	27.38	21.72	28.64	28.22	30.23	27.76	36.58	29.12	51.76	31.33
Merged-chr10-128804489-3	chr10	128804361	128804561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178066)	promoter-TSS (NM_178066)	-14.0	NM_178066	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	21.0	26.66	30.23	18.5	38.86	42.65	29.23	28.51	41.5	32.64	40.7	19.11
Merged-chr3-51415919-3	chr3	51415790	51415990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-126.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	49.26	43.77	45.64	50.27	52.77	58.95	40.86	58.09	72.18	68.29	65.32	38.22
Merged-chr9-7828875-3	chr9	7828716	7828916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007465, intron 2 of 7)	RLTR24B_MM|LTR|ERV1	7990.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	23.02	19.12	17.11	0.8	13.09	27.28	3.99	4.32	22.62	23.1	24.12	2.19
Merged-chr13-67772493-1	chr13	67772393	67772593	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7200.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	1.62	0.5	0.57	0.0	0.0	0.0	0.0	0.93	61.76	49.71	77.38	50.75
Merged-chr8-126684168-3	chr8	126684068	126684268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90732.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	27.46	33.7	53.62	34.19	77.73	50.17	39.86	45.59	58.61	60.25	57.79	33.52
Merged-chr8-71611047-3	chr8	71610985	71611185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	61.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	232.59	240.96	200.8	158.06	259.78	316.39	219.56	194.52	288.34	341.43	331.64	181.69
Merged-chr4-3695740-3	chr4	3695659	3695859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	MTEb|LTR|ERVL-MaLR	17638.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	24.63	23.9	26.24	21.72	26.59	39.2	31.89	39.95	59.6	44.19	48.74	25.69
Merged-chr9-64703046-3	chr9	64702915	64703115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34741.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	91.66	83.26	74.16	81.65	93.68	122.29	77.4	83.08	90.67	105.44	93.96	51.69
Merged-chr1-177983265-3	chr1	177983175	177983375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8123.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	252.78	240.71	268.11	280.74	271.24	307.61	241.49	204.0	337.52	376.58	482.38	223.05
Merged-chr16-36598486-3	chr16	36598393	36598593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36359.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	25.84	23.14	45.64	41.83	24.96	36.37	19.6	25.32	51.53	51.21	55.27	27.88
Merged-chr9-55208970-3	chr9	55208860	55209060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028049)	promoter-TSS (NM_028049)	25.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	34.73	38.48	34.8	20.91	43.36	44.53	16.28	28.57	33.83	39.67	64.32	31.95
Merged-chr10-13986712-3	chr10	13986574	13986774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	20295.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	33.52	16.35	32.52	19.31	40.91	56.76	67.43	80.69	63.92	57.24	61.3	37.59
Merged-chr2-181536611-3	chr2	181536512	181536712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	MYSERV6-int|LTR|ERVK	16127.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	51.69	41.5	80.43	50.68	98.59	87.49	67.43	81.53	82.02	64.27	84.42	54.82
Merged-chr11-72782295-3	chr11	72782196	72782396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024926, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	13543.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	31.09	26.91	41.64	39.01	28.64	35.75	14.95	24.34	36.39	24.6	36.18	24.12
Merged-chr13-21362850-3	chr13	21362741	21362941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016684)	promoter-TSS (NM_016684)	21.0	NM_016684	22758.0	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	26.65	26.66	37.08	48.67	40.91	41.08	43.85	60.08	53.3	41.67	92.96	33.52
Merged-chr10-83634688-3	chr10	83634589	83634789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	13975.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	22.61	13.83	21.68	24.13	21.27	18.81	12.29	19.51	24.98	22.09	46.23	6.89
Merged-chr12-36156899-3	chr12	36156787	36156987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-62.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	35.13	65.65	34.8	82.45	69.55	59.89	107.62	65.27	63.33	78.83	94.97	64.85
Merged-chr18-23869155-3	chr18	23869050	23869250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65180.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	14.13	26.41	31.38	14.48	107.19	106.61	69.09	79.23	73.17	123.02	72.86	36.34
Merged-chr4-119126088-3	chr4	119125979	119126179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	17334.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	44.01	16.6	40.5	22.12	40.91	45.15	18.27	31.57	72.18	81.84	61.81	39.16
Merged-chr19-9939066-3	chr19	9938967	9939167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39534.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	90.05	75.71	77.58	43.84	113.73	142.36	106.29	104.13	124.11	104.94	103.01	53.26
Merged-chr3-144044644-3	chr3	144044555	144044755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	157677.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	88.84	108.91	90.7	116.64	84.28	96.27	74.41	85.77	114.28	97.91	114.06	57.33
Merged-chr5-117319207-3	chr5	117319094	117319294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	-72.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	24.23	24.9	25.1	26.95	24.96	25.09	19.27	19.93	17.31	19.58	27.13	13.78
Merged-chrX-164941733-3	chrX	164941636	164941836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 13 of 14)	L2a|LINE|L2	38639.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	28.27	26.16	29.66	29.36	39.68	35.12	37.54	48.5	49.17	47.7	62.81	42.92
Merged-chr8-84004880-3	chr8	84004801	84005001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106191)	promoter-TSS (NR_106191)	-727.0	NR_106191	102466886.0		NR_106191	ENSMUSG00000098823	Mir8111	Gm27823|mmu-mir-8111	microRNA 8111	ncRNA	48.46	61.88	46.78	63.95	47.87	67.42	44.84	47.13	90.08	83.85	128.13	57.64
Merged-chr7-104507901-3	chr7	104507808	104508008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167828)	promoter-TSS (NM_001167828)	-59.0	NM_001167828	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	41.19	47.29	38.79	22.12	43.36	38.88	21.92	28.65	61.17	60.25	92.96	39.16
Merged-chr15-97361168-3	chr15	97361080	97361280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113893.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	72.68	63.64	74.16	63.55	74.05	84.66	52.82	91.51	71.59	50.71	94.47	34.15
Merged-chr1-131357929-3	chr1	131357820	131358020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-78357.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	67.43	70.93	48.49	17.7	60.55	116.02	57.47	33.34	50.75	76.82	60.8	20.99
Merged-chr1-86430214-3	chr1	86430116	86430316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3887.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	53.7	32.2	66.17	26.55	54.82	46.41	33.55	37.29	48.58	33.14	69.85	30.07
Merged-chr2-18056970-3	chr2	18056881	18057081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	-865.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	115.49	106.65	94.13	91.3	76.91	93.76	69.76	96.65	104.05	100.42	127.63	55.76
Merged-chr7-142342377-3	chr7	142342247	142342447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	L1MB3|LINE|L1	29912.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	52.09	43.51	65.6	67.17	25.77	28.22	23.25	22.74	49.96	61.76	73.86	33.83
Merged-chr4-102572262-3	chr4	102572165	102572365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2205.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	114.68	125.76	122.08	93.31	103.09	138.6	112.27	79.65	171.51	145.11	156.77	71.42
Merged-chrX-74278162-3	chrX	74278067	74278267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172154, intron 1 of 7)	PB1D7|SINE|Alu	3569.0	NM_027109	69537.0	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	49.26	34.71	38.22	43.04	64.64	57.07	52.48	57.79	57.04	57.24	59.29	46.05
Merged-chr11-88048362-3	chr11	88048258	88048458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001078167, intron 1 of 2)	CpG	985.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	27.86	19.87	17.11	21.32	21.68	21.64	18.6	19.99	40.91	33.64	41.71	22.87
Merged-chr5-66112244-3	chr5	66112148	66112348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14069.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	141.73	156.2	164.29	171.34	159.96	207.9	120.58	169.35	171.91	182.26	205.52	99.31
Merged-chr2-124705093-3	chr2	124705005	124705205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51524.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	52.49	61.88	78.72	49.07	70.37	94.07	69.76	61.26	58.22	64.27	100.5	35.09
Merged-chr7-27689381-3	chr7	27689264	27689464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	24.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	196.65	166.51	173.99	227.65	211.51	248.04	189.01	252.59	186.46	218.92	273.85	148.8
Merged-chr10-60003137-3	chr10	60003026	60003226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347451)	promoter-TSS (NM_001347451)	9.0	NM_001347451	52717.0	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	117.5	80.49	146.04	113.82	127.23	153.02	92.34	118.68	161.48	169.21	169.84	110.58
Merged-chr3-69669353-1	chr3	69669253	69669453	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52702.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	4.85	8.55	6.85	3.62	13.09	3.76	7.97	10.35	5.51	6.03	5.02	3.76
Merged-chr12-54820877-3	chr12	54820820	54821020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25258.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	22.61	20.88	37.65	48.26	28.23	28.22	26.57	22.35	21.64	19.58	32.66	17.86
Merged-chr6-135240589-3	chr6	135240491	135240691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080552, intron 4 of 5)	intron (NM_001080552, intron 4 of 5)	7293.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	29.07	29.43	48.49	40.62	38.05	32.93	26.24	52.21	26.55	39.16	52.76	28.19
Merged-chr7-113369361-3	chr7	113369252	113369452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-13.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	108.62	130.79	114.66	95.72	106.78	134.84	87.36	116.38	163.84	157.66	198.98	93.35
Merged-chr16-43363130-3	chr16	43363054	43363254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	57042.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	21.8	19.37	23.96	26.14	33.14	22.26	41.85	30.31	25.37	28.62	32.16	16.29
Merged-chr18-66002719-3	chr18	66002612	66002812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-77.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	117.1	122.75	142.61	135.14	186.96	172.15	155.12	203.3	201.61	173.73	294.45	120.61
Merged-chr2-73455792-3	chr2	73455690	73455890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1901.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	46.84	30.94	57.62	67.97	38.46	43.27	49.16	74.69	46.81	41.67	65.32	50.44
Merged-chr15-96284967-1	chr15	96284867	96285067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-2555.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	18.98	23.64	9.7	16.89	10.64	11.92	37.54	17.83	14.36	19.08	20.6	20.99
Merged-chr3-20423088-3	chr3	20422973	20423173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55896.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	61.38	47.54	90.13	68.78	69.14	84.35	109.95	118.68	60.78	87.37	104.52	56.07
Merged-chr16-3895680-3	chr16	3895590	3895790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153801, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	11071.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	63.4	57.6	69.03	66.36	84.68	75.88	53.15	79.21	52.12	62.26	80.4	41.66
Merged-chr2-75985296-3	chr2	75985211	75985411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3344.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	28.67	29.93	30.8	41.83	38.86	41.71	23.25	33.67	51.53	62.26	55.27	28.19
Merged-chr15-102073753-3	chr15	102073638	102073838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-35.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	115.08	139.09	116.94	98.14	148.1	195.98	106.63	106.21	190.98	185.78	196.97	90.85
Merged-chr3-97680799-3	chr3	97680702	97680902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9760.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	31.5	25.15	21.68	30.97	34.77	37.32	30.89	26.16	23.01	26.11	30.15	15.66
Merged-chr12-104214424-3	chr12	104214372	104214572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009251)	promoter-TSS (NM_009251)	18.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	21.8	45.28	43.93	22.93	25.77	52.05	30.23	20.92	47.8	28.12	25.63	15.98
Merged-chr13-30696092-3	chr13	30696000	30696200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	36041.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	62.99	38.48	45.64	62.34	58.91	33.87	37.2	54.95	67.66	62.26	52.26	32.89
Merged-chr11-103017145-3	chr11	103017061	103017261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026551)	promoter-TSS (NM_026551)	-14.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	63.8	60.37	42.78	56.31	84.68	91.25	38.86	64.43	75.13	86.86	85.92	39.47
Merged-chr6-121338331-3	chr6	121338234	121338434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144512)	TTS (NM_144512)	-4742.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	28.67	17.61	15.4	16.89	20.46	20.38	14.62	17.5	30.29	33.64	57.28	20.99
Merged-chr4-103197535-1	chr4	103197435	103197635	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356276, intron 8 of 11)	intron (NM_001356276, intron 8 of 11)	17641.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	2.83	2.52	5.13	10.86	4.91	2.2	5.31	11.78	2.56	5.52	4.02	4.39
Merged-chr1-191821458-3	chr1	191821344	191821544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010892)	promoter-TSS (NM_010892)	-29.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	89.24	57.6	51.34	51.48	81.82	68.99	39.2	74.5	107.0	121.51	120.09	69.86
Merged-chr1-167266616-3	chr1	167266513	167266713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	MER21B|LTR|ERVL	18514.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	25.44	20.12	41.07	37.4	21.68	30.42	15.28	41.41	30.29	25.11	28.14	15.35
Merged-chr7-35396883-3	chr7	35396744	35396944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178643)	promoter-TSS (NM_178643)	-77.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	115.89	84.26	80.43	105.78	99.0	100.97	83.04	110.13	118.01	121.01	128.13	85.21
Merged-chr1-165461128-3	chr1	165461021	165461221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-87.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	314.96	331.26	350.83	343.48	372.28	444.33	329.85	417.59	409.31	408.21	602.48	268.78
Merged-chr16-42876227-2	chr16	42876116	42876316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-454.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	39.17	37.98	31.38	22.93	69.14	48.92	59.46	48.95	45.43	54.73	46.73	31.01
Merged-chr12-77833606-1	chr12	77833506	77833706	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-393049.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	5.65	6.04	11.41	2.41	12.68	16.93	3.99	12.06	6.49	24.1	7.03	7.83
Merged-chr8-81767193-3	chr8	81767112	81767312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424650.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	21.0	15.59	24.53	12.47	21.27	19.13	18.6	14.75	31.86	8.03	25.12	15.35
Merged-chr8-26118756-3	chr8	26118652	26118852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357292)	promoter-TSS (NM_001357292)	472.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	17.77	21.63	20.54	20.51	33.14	34.81	34.21	29.69	32.06	40.67	39.19	42.29
Merged-chr11-118145920-3	chr11	118145829	118146029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16710.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	80.76	69.42	82.72	67.57	193.1	253.68	165.42	173.92	218.72	201.85	246.22	124.37
Merged-chr1-135430528-3	chr1	135430412	135430612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153774)	promoter-TSS (NM_153774)	-13.0	NM_001357578	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	60.97	53.07	41.64	41.43	71.18	68.99	33.55	56.44	71.2	68.79	83.41	60.77
Merged-chr10-67695005-3	chr10	67694909	67695109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123050.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	36.34	18.11	41.07	42.23	43.36	39.51	24.58	42.22	26.16	21.09	34.17	22.24
Merged-chr7-127422025-3	chr7	127421912	127422112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	22.0	NM_026999	69234.0	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	77.12	80.49	102.68	57.92	84.28	87.17	50.82	74.19	87.53	77.32	92.46	46.36
Merged-chr5-122050546-3	chr5	122050423	122050623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-672.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	29.88	25.91	19.97	15.69	17.18	35.75	11.29	19.68	29.5	33.14	29.14	17.86
Merged-chr8-92849867-3	chr8	92849759	92849959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-5474.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	25.04	12.07	23.39	13.67	29.86	13.48	16.28	22.77	58.22	61.26	38.19	31.01
Merged-chr2-157737347-3	chr2	157737225	157737425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025680)	promoter-TSS (NM_025680)	-76.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	87.62	71.43	87.28	61.54	59.32	87.8	47.83	66.9	81.43	100.42	76.38	60.77
Merged-chr16-57396447-3	chr16	57396360	57396560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43183.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	25.84	23.9	27.38	27.75	40.91	30.42	25.58	42.95	41.7	24.6	30.15	25.37
Merged-chr12-84219421-3	chr12	84219323	84219523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-542.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	18.57	13.58	27.95	15.28	28.23	37.63	32.55	30.25	31.27	22.09	31.15	15.04
Merged-chr9-90054447-3	chr9	90054342	90054542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007801, exon 1 of 12)	5' UTR (NM_007801, exon 1 of 12)	175.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	61.38	78.23	65.6	68.78	70.77	105.05	52.82	65.13	154.6	133.56	166.82	59.83
Merged-chr2-84505203-1	chr2	84505103	84505303	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046046, intron 1 of 2)	Lx|LINE|L1	1670.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.4	0.25	1.14	0.0	0.0	0.63	0.0	0.39	41.7	40.17	63.31	27.88
Merged-chr5-122821367-3	chr5	122821264	122821464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021505)	promoter-TSS (NM_021505)	-22.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	61.78	55.84	71.88	49.47	51.14	61.46	39.2	44.24	84.58	68.29	92.96	54.82
Merged-chr9-32668213-3	chr9	32668120	32668320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27822.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	22.21	14.34	46.21	29.76	33.55	26.97	26.91	43.6	23.6	26.11	45.73	27.88
Merged-chr7-16313648-1	chr7	16313548	16313748	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133234, exon 3 of 4)	exon (NM_133234, exon 3 of 4)	4065.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	21.8	19.87	13.12	15.69	16.36	24.46	14.95	16.88	36.78	35.65	45.73	19.74
Merged-chr15-68258167-3	chr15	68258055	68258255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	701.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	133.25	104.38	144.33	100.55	130.5	157.73	122.57	176.69	191.18	143.1	226.12	100.87
Merged-chr12-91751504-3	chr12	91751414	91751614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	Lx7|LINE|L1	34922.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	21.8	20.12	23.39	24.13	25.36	21.01	22.92	28.37	36.78	16.57	23.62	19.74
Merged-chrX-10216776-3	chrX	10216679	10216879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177953)	promoter-TSS (NM_001177953)	16.0	NM_001177954	19893.0	Mm.247556	NM_011285	ENSMUSG00000031174	Rpgr	Rd9|Rp3h	retinitis pigmentosa GTPase regulator	protein-coding	48.86	52.57	53.05	51.08	58.91	68.67	35.54	64.54	71.2	76.32	97.98	51.06
Merged-chr8-27030545-3	chr8	27030436	27030636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153592, intron 6 of 11)	MTD|LTR|ERVL-MaLR	6737.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	91.66	71.94	90.13	88.48	92.87	103.48	100.65	115.15	82.22	71.3	106.02	58.27
Merged-chr3-9828770-3	chr3	9828654	9828854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	4925.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	22.21	20.63	51.34	47.06	39.68	33.24	42.85	52.32	34.22	20.08	49.75	35.71
Merged-chr6-134921614-3	chr6	134921494	134921694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009875, intron 1 of 2)	intron (NM_009875, intron 1 of 2)	1193.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	23.42	27.17	23.96	24.94	24.96	26.65	18.93	19.74	52.91	37.16	62.81	41.04
Merged-chr10-127311263-3	chr10	127311176	127311376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003913, intron 1 of 20)	intron (NM_001003913, intron 1 of 20)	510.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	14.94	12.83	3.42	3.22	19.64	25.09	10.63	9.59	22.23	22.59	22.11	10.34
Merged-chr7-63912148-3	chr7	63912069	63912269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4688.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	42.4	31.94	69.6	41.43	67.5	56.44	42.52	69.0	78.68	66.28	78.89	46.68
Merged-chr10-13946701-3	chr10	13946606	13946806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19369.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	86.82	78.23	90.13	119.05	73.64	121.35	74.41	111.65	94.21	112.47	126.12	53.57
Merged-chr15-81858743-3	chr15	81858640	81858840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-414.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	24.63	20.12	21.11	27.75	28.23	27.59	30.23	20.36	32.06	29.12	37.18	26.31
Merged-chr4-128654681-3	chr4	128654572	128654772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195130)	promoter-TSS (NM_001195130)	-30.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	85.2	81.24	85.57	62.34	84.28	116.65	60.12	72.76	118.6	113.98	155.77	58.58
Merged-chr16-95827611-3	chr16	95827521	95827721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	71092.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	113.87	102.87	111.24	137.15	119.87	139.23	133.86	149.58	144.37	144.1	182.4	101.81
Merged-chr8-79399468-3	chr8	79399368	79399568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	0.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	64.2	64.89	74.73	86.47	59.32	77.45	73.41	88.21	68.45	50.21	103.51	44.48
Merged-chr14-55681958-3	chr14	55681852	55682052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-135.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	119.93	107.15	134.06	112.62	156.28	170.27	94.67	130.46	116.05	126.53	127.63	93.35
Merged-chr5-113635303-3	chr5	113635202	113635402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	8301.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	18.57	25.4	27.38	34.99	37.23	31.36	31.89	52.37	31.86	35.15	65.83	37.28
Merged-chr10-127030830-3	chr10	127030740	127030940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025537)	promoter-TSS (NM_025537)	-26.0	NM_025537	66399.0	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	40.38	24.9	33.09	29.36	37.64	38.26	17.94	26.78	44.65	43.68	41.71	22.87
Merged-chr16-88480339-3	chr16	88480245	88480445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26633.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	21.4	20.37	32.52	26.55	52.77	53.93	40.19	76.37	43.86	48.7	49.75	26.94
Merged-chr8-71310581-3	chr8	71310463	71310663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	RLTR17|LTR|ERVK	37849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	60.97	55.34	58.19	43.04	73.23	97.52	39.86	49.77	77.3	88.37	87.43	55.76
Merged-chr2-35256347-3	chr2	35256257	35256457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206367)	promoter-TSS (NM_001206367)	-2.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	43.21	35.97	65.03	49.07	51.55	50.17	36.87	58.82	56.25	49.21	69.34	37.91
Merged-chr6-127351865-3	chr6	127351777	127351977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-43910.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	58.95	62.13	59.9	31.37	47.87	90.62	59.13	36.87	58.42	64.27	55.78	23.18
Merged-chr4-6191056-3	chr4	6190965	6191165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-40.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	63.4	38.99	44.5	76.82	107.59	100.66	74.41	116.22	125.09	119.5	195.97	70.17
Merged-chr14-54577557-3	chr14	54577458	54577658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010590, exon 1 of 8)	5' UTR (NM_010590, exon 1 of 8)	103.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	31.09	25.91	31.38	18.1	36.41	35.75	13.29	19.88	36.98	33.14	52.26	23.18
Merged-chr16-45376013-1	chr16	45375913	45376113	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33040.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.04	5.79	10.84	20.51	27.41	19.44	20.93	25.91	4.72	3.01	3.52	2.51
Merged-chr4-86690403-3	chr4	86690295	86690495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20336.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	157.48	124.76	147.75	159.67	160.37	179.68	124.9	145.29	165.41	185.78	202.0	121.23
Merged-chr1-71974915-3	chr1	71974825	71975025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	30270.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	42.4	46.28	37.65	79.23	52.37	65.54	65.11	101.5	54.48	51.21	85.42	38.53
Merged-chr4-11076191-3	chr4	11076074	11076274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	31.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	46.03	54.08	48.49	49.07	74.87	61.46	43.85	57.0	64.51	64.27	72.36	36.65
Merged-chr14-31608942-3	chr14	31608834	31609034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31551.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	18.98	14.34	33.66	25.34	21.27	23.83	19.93	22.01	38.35	28.62	35.68	15.98
Merged-chr1-23843954-2	chr1	23843869	23844069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110972)	TTS (NR_110972)	65767.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	23.42	17.1	37.08	53.49	2.45	0.0	1.33	0.53	35.01	31.13	58.79	29.45
Merged-chr1-132139715-3	chr1	132139570	132139770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	15.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	29.07	25.91	26.81	27.75	29.46	30.42	26.91	28.35	14.36	22.09	44.22	15.66
Merged-chr15-100085088-3	chr15	100084971	100085171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	46407.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	38.76	20.37	53.62	13.67	28.23	32.61	33.55	47.44	24.98	27.11	40.7	26.0
Merged-chr2-75659804-3	chr2	75659671	75659871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146130, intron 1 of 10)	CpG	481.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	103.37	111.68	98.69	81.24	98.18	152.4	120.25	89.44	150.07	173.73	150.74	95.55
Merged-chr5-3543831-3	chr5	3543744	3543944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	11.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	89.64	74.96	73.02	65.96	95.73	100.97	72.08	98.38	97.36	83.85	127.13	66.1
Merged-chr2-34373213-3	chr2	34373072	34373272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1127.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	19.79	17.86	13.12	31.77	36.82	32.93	23.58	28.51	36.98	25.61	60.3	34.46
Merged-chr10-40349272-3	chr10	40349181	40349381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-27.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	251.97	287.75	250.43	269.07	282.28	315.14	263.41	285.09	325.32	338.92	399.47	180.75
Merged-chr6-113038119-3	chr6	113038024	113038224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8178.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	34.73	41.5	35.94	39.01	66.27	74.63	45.51	56.24	50.75	54.23	56.28	38.85
Merged-chr2-122147605-3	chr2	122147509	122147709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-78.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	192.21	191.92	160.3	170.53	192.69	194.42	108.29	148.99	217.14	186.28	180.89	115.6
Merged-chr3-95016248-3	chr3	95016135	95016335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-778.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	98.12	52.57	86.14	53.49	76.5	81.53	56.8	72.14	96.18	107.95	121.6	52.94
Merged-chr4-130801429-3	chr4	130801345	130801545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8908.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	39.98	33.2	74.73	51.08	74.46	62.71	86.03	75.73	90.67	64.77	112.56	56.39
Merged-chr2-167260598-3	chr2	167260507	167260707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20070.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	41.59	18.36	54.19	58.32	50.73	35.43	91.35	99.56	39.53	22.09	52.76	30.39
Merged-chr14-32165809-4	chr14	32165744	32165944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019744)	promoter-TSS (NM_019744)	55.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	32.71	29.93	15.4	15.28	20.86	16.31	18.93	10.65	24.98	19.08	35.17	20.99
Merged-chr2-128445604-3	chr2	128445530	128445730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16279.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	38.76	26.66	36.51	27.35	21.27	38.57	21.59	23.78	51.73	49.21	35.68	31.01
Merged-chr9-21924205-3	chr9	21924108	21924308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3080.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	47.65	39.24	53.05	38.61	64.23	97.52	56.14	90.06	91.85	86.86	107.53	63.91
Merged-chr15-97373996-3	chr15	97373902	97374102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172293, exon 5 of 6)	5' UTR (NM_172293, exon 5 of 6)	-126715.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	24.23	15.34	37.65	26.14	28.23	42.96	31.22	43.04	43.47	42.68	36.68	18.8
Merged-chr14-26638026-3	chr14	26637916	26638116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-118.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	351.71	323.21	289.79	318.54	355.92	385.07	322.21	340.63	415.21	423.28	461.28	273.48
Merged-chr1-165604388-3	chr1	165604295	165604495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 4 of 5)	intron (NM_001083897, intron 4 of 5)	30146.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	27.46	17.86	42.21	26.14	25.36	31.67	22.59	50.58	30.09	22.59	50.75	24.43
Merged-chr19-32211050-3	chr19	32210949	32211149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	-36.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	31.09	16.35	19.97	24.13	61.77	80.27	37.2	42.87	39.14	28.62	41.2	24.12
Merged-chr18-36679396-3	chr18	36679276	36679476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357512)	promoter-TSS (NM_001357512)	-10.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	129.62	88.79	89.56	84.86	135.0	156.79	87.69	128.33	180.95	193.31	195.47	112.46
Merged-chr11-98729433-3	chr11	98729325	98729525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011869)	promoter-TSS (NM_011869)	10.0	NM_001361995	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	37.96	20.37	31.38	29.36	39.68	44.53	17.61	24.2	46.03	33.64	42.71	18.8
Merged-chr10-13184276-3	chr10	13184140	13184340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181470, intron 4 of 10)	intron (NM_181470, intron 4 of 10)	-6217.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	21.8	21.88	34.23	25.74	29.46	27.91	30.89	34.82	29.11	18.08	24.12	16.92
Merged-chr8-46595797-3	chr8	46595697	46595897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	21430.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	91.66	78.73	107.82	121.46	73.64	95.33	88.03	122.66	105.42	92.89	120.6	71.42
Merged-chr14-72933828-3	chr14	72933727	72933927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91776.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	22.61	21.13	26.24	44.64	24.55	17.87	18.93	16.15	38.35	28.62	44.22	23.18
Merged-chr12-73611002-3	chr12	73610893	73611093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	26197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	29.88	37.98	42.21	20.51	49.91	63.66	31.56	33.64	45.04	42.68	59.8	20.99
Merged-chr8-122430083-1	chr8	122429983	122430183	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2857.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	41.59	43.26	66.17	49.47	67.5	60.52	54.14	47.3	62.55	47.2	70.85	39.47
Merged-chr11-34031538-3	chr11	34031436	34031636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15392.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	185.75	174.06	161.44	190.64	166.91	223.26	158.45	173.22	194.13	215.91	248.73	117.79
Merged-chr11-108222831-3	chr11	108222747	108222947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	121041.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	100.55	92.81	136.91	150.02	78.96	96.27	96.33	129.51	109.95	72.3	112.05	62.97
Merged-chr5-103758697-3	chr5	103758615	103758815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	4142.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	32.71	12.83	26.24	34.99	40.09	37.0	29.56	28.82	40.12	49.71	38.19	29.76
Merged-chr10-117860545-3	chr10	117860458	117860658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14584.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	59.36	50.56	85.57	71.99	101.05	113.2	80.72	106.07	97.16	95.4	121.6	78.94
Merged-chr10-66864589-3	chr10	66864544	66864744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55740.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	153.04	97.34	183.69	208.74	168.55	174.66	217.24	221.64	187.25	173.73	234.16	135.96
Merged-chr7-141562149-3	chr7	141562018	141562218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007459)	promoter-TSS (NM_007459)	-62.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	106.6	103.88	99.26	80.84	117.82	140.48	107.62	108.2	129.42	124.52	145.72	77.69
Merged-chrX-57305161-3	chrX	57305048	57305248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	21453.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	21.4	16.1	37.08	37.0	41.32	25.09	19.93	28.23	26.16	17.07	18.59	21.3
Merged-chr13-33931813-3	chr13	33931728	33931928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-4204.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	25.44	18.36	26.24	22.93	33.96	22.89	28.9	47.33	25.96	34.14	32.16	26.63
Merged-chr10-44691794-3	chr10	44691715	44691915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-233067.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	100.14	64.14	107.25	75.61	128.87	125.74	93.34	103.37	91.66	94.4	102.0	62.34
Merged-chr3-53460273-3	chr3	53460171	53460371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	2987.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	48.86	34.71	40.5	45.85	58.09	72.75	46.17	60.42	79.27	71.3	90.45	41.66
Merged-chr10-99427284-3	chr10	99427178	99427378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	164047.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	14.13	19.37	27.38	25.74	18.0	16.93	17.61	19.96	20.26	8.03	18.59	16.29
Merged-chr1-155505186-1	chr1	155505086	155505286	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21925.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	2.42	2.77	5.7	5.23	4.91	4.08	11.29	15.03	4.33	4.52	20.6	2.19
Merged-chr17-10383624-3	chr17	10383525	10383725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59023.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	108.22	93.07	144.33	122.27	68.32	81.22	92.01	112.32	107.39	83.85	140.19	61.4
Merged-chr5-100585229-3	chr5	100585145	100585345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-13040.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	29.07	28.67	19.97	29.76	36.0	21.32	17.27	30.95	22.82	19.08	25.12	24.43
Merged-chr13-37845797-3	chr13	37845702	37845902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	18409.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	44.42	31.94	45.64	55.91	43.77	36.69	33.55	37.09	35.99	22.09	32.16	19.74
Merged-chr5-135778523-3	chr5	135778403	135778603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008617)	promoter-TSS (NM_008617)	-118.0	NM_001289557	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	221.28	170.28	167.14	167.72	215.6	305.42	139.18	161.55	232.29	266.12	235.66	154.13
Merged-chr15-88862009-3	chr15	88861915	88862115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145478)	promoter-TSS (NM_145478)	-179.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	226.53	234.17	288.08	240.11	263.87	332.39	254.11	262.91	312.34	305.78	372.84	205.19
Merged-chr1-131103933-3	chr1	131103842	131104042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6099.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	105.39	60.37	102.68	102.56	96.55	112.57	85.7	91.57	96.97	73.31	143.21	52.32
Merged-chr9-21962572-3	chr9	21962390	21962590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010149, intron 1 of 7)	intron (NM_010149, intron 1 of 7)	1086.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	5.65	4.53	2.85	9.65	15.14	8.47	8.3	13.23	8.85	12.55	12.56	10.65
Merged-chr7-16294985-3	chr7	16294885	16295085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8190.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	76.72	105.64	106.68	110.6	92.05	136.4	83.04	121.65	134.93	138.08	133.66	87.71
Merged-chr9-25510768-3	chr9	25510629	25510829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	29132.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	92.87	70.43	126.64	121.87	136.64	145.81	159.44	160.04	147.71	122.01	170.84	90.22
Merged-chr17-43557317-3	chr17	43557214	43557414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11137.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	81.97	80.99	62.75	40.62	83.05	132.01	90.68	73.15	79.46	128.04	118.08	39.78
Merged-chr1-184478190-3	chr1	184478097	184478297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79494.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	83.18	72.69	118.65	95.32	92.46	105.36	71.75	111.98	111.33	113.98	135.17	71.42
Merged-chr1-44147871-3	chr1	44147769	44147969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	125.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	86.01	65.4	92.41	78.03	121.91	94.7	81.71	138.53	114.28	96.4	132.15	89.91
Merged-chr3-144202359-4	chr3	144202207	144202407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161770)	promoter-TSS (NM_001161770)	25.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	31.5	29.68	24.53	24.94	22.09	16.93	15.28	20.44	25.18	23.1	18.59	17.54
Merged-chr11-62076911-3	chr11	62076779	62076979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029936)	promoter-TSS (NM_001029936)	-145.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	59.76	41.75	30.8	36.2	48.27	81.22	45.84	49.54	49.57	49.21	66.83	32.27
Merged-chr5-21030393-3	chr5	21030287	21030487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	4860.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	45.63	45.78	57.62	80.44	54.82	58.01	50.16	72.59	40.52	30.13	53.26	26.94
Merged-chr14-75017510-3	chr14	75017385	75017585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	1458.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	25.44	20.12	40.5	32.98	30.27	39.82	23.58	53.41	32.06	29.62	52.26	19.11
Merged-chr12-59061390-3	chr12	59061268	59061468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030057, exon 1 of 6)	5' UTR (NM_030057, exon 1 of 6)	104.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	68.65	56.09	69.6	70.38	68.73	79.65	82.05	75.34	72.97	97.41	130.65	58.27
Merged-chr18-36783175-3	chr18	36783088	36783288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305627)	promoter-TSS (NM_001305627)	17.0	NM_008214	15115.0	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	35.94	30.69	31.38	48.26	55.64	47.04	34.21	43.65	71.0	65.27	91.45	39.16
Merged-chr3-9833652-3	chr3	9833561	9833761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	18.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	88.84	74.2	106.1	76.02	89.18	103.79	62.78	82.65	101.1	106.95	113.06	42.6
Merged-chr12-3799749-3	chr12	3799641	3799841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7239.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	48.86	44.77	63.32	59.53	55.23	70.24	45.51	66.65	57.63	54.73	83.41	48.24
Merged-chr12-12295100-4	chr12	12295044	12295244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	33005.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.46	10.31	10.27	10.05	13.09	17.87	13.29	8.61	19.28	24.6	20.1	20.99
Merged-chr7-45182370-3	chr7	45182270	45182470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053256)	TTS (NM_053256)	1375.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	52.49	42.76	44.5	61.13	58.5	64.91	27.24	51.59	75.53	51.21	79.39	31.01
Merged-chr1-82793304-3	chr1	82793188	82793388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24832.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	18.98	19.12	26.81	22.93	40.09	28.85	37.2	34.96	36.98	35.65	26.63	34.15
Merged-chr6-48554758-3	chr6	48554606	48554806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177736)	promoter-TSS (NM_177736)	-93.0	NM_001110160	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	85.6	64.89	99.26	72.8	83.46	85.61	76.07	100.85	102.47	103.43	127.63	62.65
Merged-chr2-5713424-3	chr2	5713277	5713477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	1385.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	70.26	55.34	69.03	43.84	64.64	81.84	34.21	84.48	46.62	42.18	57.28	52.63
Merged-chr3-84814451-3	chr3	84814359	84814559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1118.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	202.3	216.82	233.32	201.9	173.87	289.11	218.9	225.95	286.77	319.34	379.88	214.9
Merged-chr14-72603083-3	chr14	72602984	72603184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106919.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	75.51	58.86	31.95	47.86	52.77	64.28	44.18	50.52	81.43	69.79	90.45	53.57
Merged-chr14-104937542-3	chr14	104937339	104937539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015593, intron 4 of 5)	intron (NR_015593, intron 4 of 5)	177237.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	16.15	29.43	19.97	33.78	9.41	20.7	29.23	19.65	59.2	42.18	35.17	26.94
Merged-chr4-150078814-3	chr4	150078731	150078931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8672.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	18.98	12.83	21.11	3.22	14.32	22.89	20.59	11.86	23.8	24.1	29.65	4.7
Merged-chr5-137858149-3	chr5	137858039	137858239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-90.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	18.57	12.32	23.39	24.94	19.64	21.64	17.94	12.87	26.36	29.12	27.13	20.99
Merged-chr5-124440223-1	chr5	124440123	124440323	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310725, intron 1 of 6)	CpG	293.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	21.0	21.63	5.13	7.24	11.05	23.2	9.63	6.9	15.74	30.63	23.62	16.6
Merged-chr14-75164555-3	chr14	75164481	75164681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	28156.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	41.59	37.73	51.34	47.46	57.27	71.18	36.87	56.72	75.13	76.32	88.94	37.59
Merged-chr6-122935054-3	chr6	122934956	122935156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_199311)	TTS (NM_199311)	13208.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	32.71	25.91	28.52	50.27	41.32	48.6	40.52	38.36	36.19	32.64	40.2	18.48
Merged-chr11-83675913-3	chr11	83675813	83676013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13329.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	17.36	28.42	36.51	38.21	24.55	21.01	14.95	23.92	36.19	34.14	26.63	35.71
Merged-chr18-38372179-3	chr18	38372061	38372261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33168.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	73.49	79.48	47.92	59.12	67.5	127.0	63.11	60.59	77.69	121.51	97.98	48.24
Merged-chr18-63708646-3	chr18	63708564	63708764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360837)	promoter-TSS (NM_001360837)	-31.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	97.31	111.93	98.12	114.63	113.73	142.36	105.3	101.66	155.97	126.53	193.96	116.54
Merged-chr11-89100643-3	chr11	89100561	89100761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26820.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	47.65	40.5	27.38	16.89	32.73	37.63	7.64	18.7	33.44	31.63	60.8	17.54
Merged-chr6-128362791-3	chr6	128362704	128362904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326586)	promoter-TSS (NM_001326586)	18.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	73.49	80.99	69.6	53.89	65.05	81.53	74.74	73.65	43.66	47.2	75.87	27.57
Merged-chr10-67633302-3	chr10	67633206	67633406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61347.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	27.46	14.59	42.21	28.15	31.09	38.88	35.21	33.59	54.68	32.13	45.73	39.47
Merged-chr7-64360253-3	chr7	64360145	64360345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13850.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	23.42	12.58	24.53	23.33	45.0	29.16	31.22	49.96	37.76	29.12	36.18	17.54
Merged-chr16-22010398-3	chr16	22010293	22010493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357424, intron 1 of 15)	intron (NM_001357424, intron 1 of 15)	909.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	27.46	23.9	43.93	25.34	34.77	51.11	34.55	53.89	58.02	43.18	44.22	55.45
Merged-chr7-47068031-3	chr7	47067937	47068137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15187.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	141.33	138.09	198.52	213.97	185.73	211.66	230.53	229.57	192.36	179.75	247.72	126.56
Merged-chr19-26845475-3	chr19	26845358	26845558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21551.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	18.17	17.1	4.56	25.34	19.23	22.26	12.62	22.15	24.98	28.12	25.63	20.36
Merged-chr17-12171239-3	chr17	12171116	12171316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51932.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	10.5	14.84	25.67	21.72	11.45	28.85	47.83	35.89	67.46	57.24	84.42	34.77
Merged-chr3-139075460-3	chr3	139075343	139075543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040690)	promoter-TSS (NM_001040690)	-242.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	135.27	123.0	126.64	128.3	96.55	113.2	117.59	134.36	108.77	122.51	177.88	67.98
Merged-chr10-96690498-3	chr10	96690369	96690569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73468.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	33.11	42.76	27.38	13.67	29.46	60.21	22.26	21.25	76.71	60.25	51.76	31.33
Merged-chr7-141022307-3	chr7	141022206	141022406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5414.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	41.59	29.68	49.63	37.0	65.05	60.21	44.18	58.99	59.01	68.29	77.38	57.95
Merged-chr19-4037955-3	chr19	4037866	4038066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	-54.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	35.53	23.64	20.54	18.9	44.59	28.54	19.93	22.29	28.91	41.67	35.17	30.7
Merged-chr1-45868893-3	chr1	45868788	45868988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56706.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	61.38	42.01	64.46	78.43	49.91	48.6	55.14	79.49	46.62	62.76	50.75	40.1
Merged-chr9-90251244-3	chr9	90251156	90251356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	19513.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	42.8	30.94	41.07	24.53	59.32	47.98	51.49	63.08	45.04	43.18	38.69	28.82
Merged-chr4-154927136-1	chr4	154927036	154927236	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178931, intron 2 of 7)	intron (NM_178931, intron 2 of 7)	941.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	6.46	5.79	11.98	3.22	4.91	11.29	3.99	0.98	50.16	44.69	35.17	18.48
Merged-chr12-69159224-3	chr12	69159130	69159330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-44.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	238.64	249.01	256.71	244.14	221.32	257.76	193.99	160.65	279.89	290.22	259.78	167.91
Merged-chr11-44523957-3	chr11	44523866	44524066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	4589.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	21.0	35.72	50.2	41.83	37.23	48.92	40.52	43.01	45.04	35.15	36.18	25.37
Merged-chr9-106447624-3	chr9	106447543	106447743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	35.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	92.07	59.86	74.73	90.49	108.41	122.61	75.4	117.42	111.92	122.01	121.1	77.38
Merged-chr16-32402982-3	chr16	32402911	32403111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	2505.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	35.94	38.99	19.97	24.53	35.59	41.39	11.96	27.2	50.94	54.23	48.24	30.39
Merged-chr7-45136426-3	chr7	45136292	45136492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013520)	promoter-TSS (NM_013520)	40.0	NM_013520	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	18.17	22.89	39.93	39.01	16.77	25.4	34.21	28.43	44.06	34.65	37.18	28.82
Merged-chr12-86241804-3	chr12	86241707	86241907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324488)	promoter-TSS (NM_001324488)	-51.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	194.23	175.31	163.72	155.65	203.73	248.66	129.55	153.81	180.56	162.18	206.02	101.5
Merged-chr7-83809860-3	chr7	83809738	83809938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14999.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	35.13	37.23	45.07	48.67	38.46	40.45	50.49	44.8	45.24	50.21	61.81	24.12
Merged-chr15-39737659-3	chr15	39737553	39737753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8277.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	16.96	18.86	35.37	22.12	45.82	28.22	30.89	62.58	37.37	48.2	67.84	34.77
Merged-chr17-43093839-1	chr17	43093739	43093939	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	64452.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	6.46	2.77	15.97	5.63	2.05	4.08	7.64	10.65	2.95	2.01	1.0	5.95
Merged-chr6-99522775-3	chr6	99522675	99522875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-12329	-1782.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	24.23	34.46	28.52	14.88	35.18	35.12	35.21	15.79	25.57	31.13	27.64	15.66
Merged-chr5-23894420-3	chr5	23894333	23894533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42200.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	57.34	59.61	74.16	98.54	112.09	104.11	91.01	104.02	113.88	85.36	123.61	61.71
Merged-chr17-35424798-3	chr17	35424727	35424927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023124)	promoter-TSS (NM_023124)	-20.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	71.47	60.37	59.9	41.02	81.82	93.44	37.54	35.97	86.54	121.01	113.56	61.09
Merged-chr6-134035261-3	chr6	134035162	134035362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007961)	promoter-TSS (NM_007961)	-438.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	134.46	142.11	101.54	65.56	120.28	175.6	101.64	82.65	117.42	124.52	108.54	46.68
Merged-chr10-119055420-3	chr10	119055296	119055496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4897.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	43.21	34.96	65.03	45.85	62.18	61.15	36.21	61.32	74.54	41.17	88.94	36.03
Merged-chr16-30601612-3	chr16	30601488	30601688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	1865.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	31.5	25.4	27.95	28.15	31.91	49.86	32.88	29.27	21.83	21.09	49.24	26.31
Merged-chr13-111933726-3	chr13	111933625	111933825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65789.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	31.5	17.1	63.89	50.27	42.55	48.6	40.19	57.62	45.83	44.69	58.29	45.11
Merged-chr6-97178799-1	chr6	97178699	97178899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081111, intron 1 of 16)	intron (NM_001081111, intron 1 of 16)	325.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	12.11	27.92	15.4	21.72	23.73	18.81	28.9	16.88	18.88	17.07	22.61	23.81
Merged-chr5-146829721-1	chr5	146829621	146829821	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3169.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.81	6.54	4.56	3.62	1.23	2.51	2.66	3.28	44.84	36.65	46.23	29.45
Merged-chr17-65886398-3	chr17	65886291	65886491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-636.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	17.36	16.85	11.98	28.56	23.73	19.44	27.57	31.32	30.49	23.6	47.74	23.81
Merged-chr8-107425098-3	chr8	107425020	107425220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026277)	promoter-TSS (NM_026277)	-82.0	NM_026277	67619.0	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	63.8	60.87	59.9	65.16	60.96	104.42	54.14	78.87	67.86	69.79	113.56	65.47
Merged-chr9-119075531-3	chr9	119075458	119075658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019676, intron 5 of 14)	intron (NM_019676, intron 5 of 14)	12703.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	39.17	33.2	31.95	46.25	58.5	54.25	34.21	54.87	54.88	49.21	80.4	54.51
Merged-chr7-115019564-3	chr7	115019426	115019626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	68252.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	29.07	25.66	43.35	33.38	29.46	23.52	30.89	42.2	32.26	22.59	33.67	12.22
Merged-chr10-42276136-1	chr10	42276036	42276236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019740, intron 1 of 3)	CpG-1005	606.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	16.56	20.12	9.13	18.1	15.96	8.78	12.95	14.75	18.1	10.54	16.08	14.1
Merged-chr13-86046754-3	chr13	86046610	86046810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	85.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	81.97	95.58	105.53	111.01	65.87	92.82	113.93	59.19	113.69	104.44	133.16	81.45
Merged-chr8-84200399-3	chr8	84200298	84200498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8120.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	35.53	17.1	19.4	18.5	25.36	28.54	9.97	17.69	32.26	39.16	24.62	11.28
Merged-chr1-180849068-3	chr1	180848970	180849170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2081.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	120.73	104.38	113.52	123.88	148.5	182.19	91.68	129.93	150.07	112.97	166.82	82.39
Merged-chr15-62003044-3	chr15	62002922	62003122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17681.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	37.55	16.1	37.08	29.76	23.73	28.22	28.23	26.66	14.95	20.59	22.61	19.42
Merged-chr18-36559826-4	chr18	36559681	36559881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-822.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	32.3	39.24	24.53	28.15	53.59	51.43	43.18	40.09	39.73	36.15	34.67	42.92
Merged-chr16-55754592-3	chr16	55754491	55754691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67547.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	105.79	71.94	98.12	85.67	80.18	130.45	69.76	105.79	117.03	127.53	118.59	55.76
Merged-chr19-34524744-3	chr19	34524716	34524916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021460, exon 2 of 10)	exon (NM_021460, exon 2 of 10)	2658.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	23.02	27.92	26.81	28.15	19.64	29.16	29.9	21.81	42.09	28.12	34.17	27.88
Merged-chr14-30635406-3	chr14	30635307	30635507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9199.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	54.11	47.79	50.77	24.94	26.18	52.68	23.58	15.08	55.86	64.27	52.26	29.45
Merged-chr10-59292735-3	chr10	59292635	59292835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30561.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	24.23	20.63	19.97	15.28	38.86	37.0	16.61	31.12	29.31	29.62	38.69	18.48
Merged-chr12-111758881-3	chr12	111758776	111758976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	8.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	23.42	14.84	25.1	18.9	24.55	18.81	15.28	19.09	34.81	31.63	28.14	19.11
Merged-chr6-129434396-3	chr6	129434282	129434482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	17618.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	118.31	129.79	138.62	151.23	111.69	157.1	138.85	170.66	144.37	164.69	160.79	83.02
Merged-chr11-3155458-2	chr11	3155347	3155547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 13 of 33)	exon (NM_030207, exon 13 of 33)	31426.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	22.61	25.66	28.52	22.93	25.77	16.93	33.22	19.4	0.39	0.5	2.01	0.31
Merged-chr17-34555692-3	chr17	34555591	34555791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8604.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	21.8	20.88	16.54	23.73	20.86	17.56	13.29	18.76	33.04	28.12	36.18	26.94
Merged-chr4-8842969-3	chr4	8842874	8843074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 18 of 36)	L1MA5A|LINE|L1	91650.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	80.76	76.72	123.79	113.42	157.5	171.84	138.52	176.02	147.12	182.26	190.94	93.04
Merged-chr16-89848764-3	chr16	89848678	89848878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-30426.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	72.28	88.79	107.82	122.67	119.87	102.22	96.0	115.79	103.65	94.4	133.66	53.57
Merged-chr4-59581588-3	chr4	59581479	59581679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024255)	promoter-TSS (NM_024255)	16.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	137.29	108.16	118.65	141.98	144.82	157.1	91.35	137.61	166.2	176.24	235.66	111.21
Merged-chr4-142091269-3	chr4	142091164	142091364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6960.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	63.8	49.3	111.81	95.72	62.59	67.73	74.07	97.43	47.4	42.18	65.83	59.52
Merged-chr2-174438950-3	chr2	174438849	174439049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	90.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	126.39	129.54	115.8	64.75	121.5	126.68	84.7	107.64	179.18	160.67	197.48	90.22
Merged-chr5-38493989-1	chr5	38493889	38494089	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145559, intron 1 of 10)	ORR1C1|LTR|ERVL-MaLR	8163.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.5	0.0	1.21	5.73	0.31	1.66	0.64	28.52	31.63	54.27	26.63
Merged-chr9-107296645-3	chr9	107296555	107296755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-4.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	22.21	32.95	29.09	26.14	28.64	30.73	32.55	26.07	37.37	47.7	50.75	30.07
Merged-chr5-9087426-1	chr5	9087326	9087526	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13311.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	7.67	17.1	21.68	26.14	11.86	7.21	12.95	18.93	22.23	27.62	36.18	15.98
Merged-chr4-101182808-3	chr4	101182685	101182885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 5 of 24)	(A)n|Simple_repeat|Simple_repeat	82497.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	31.09	33.45	28.52	51.88	42.14	30.73	45.51	45.87	32.65	24.6	42.71	29.76
Merged-chr14-66868746-3	chr14	66868653	66868853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-97.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	143.35	112.18	121.51	144.79	131.73	121.98	82.05	128.16	148.89	161.18	177.88	99.93
Merged-chr11-117194645-3	chr11	117194591	117194791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4970.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	102.97	93.57	94.7	87.28	88.78	97.52	79.72	82.49	125.68	108.45	139.69	74.24
Merged-chr4-86668785-3	chr4	86668673	86668873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	1286.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	17.77	15.59	37.65	19.31	24.14	24.15	20.93	30.59	24.78	16.57	29.65	11.59
Merged-chr12-91764502-3	chr12	91764396	91764596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21940.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	29.48	27.92	50.77	30.57	37.64	29.79	48.83	69.79	48.58	34.14	46.23	44.8
Merged-chr4-133277738-3	chr4	133277648	133277848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110978)	promoter-TSS (NR_110978)	42.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	70.66	73.95	44.5	47.46	46.64	66.48	25.24	28.99	107.0	97.91	95.47	44.17
Merged-chr15-58262270-3	chr15	58262168	58262368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47376.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	36.34	13.83	34.8	27.75	89.18	72.44	57.8	76.37	94.8	92.89	88.44	54.51
Merged-chr15-75616572-3	chr15	75616468	75616668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011759)	promoter-TSS (NM_011759)	-116.0	NM_001044718	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	201.09	184.12	179.12	189.03	192.69	250.54	160.77	186.39	195.31	215.4	255.26	124.05
Merged-chr1-189007818-3	chr1	189007726	189007926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172650)	promoter-TSS (NM_172650)	14.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	62.18	57.6	73.02	57.92	88.37	83.72	49.16	74.83	96.57	106.45	77.88	50.12
Merged-chr2-36234651-3	chr2	36234549	36234749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	MIRb|SINE|MIR	4223.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	46.84	30.94	67.31	60.33	56.05	35.75	60.12	61.77	53.89	52.22	79.39	65.16
Merged-chr4-135945916-3	chr4	135945808	135946008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-540.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	52.9	30.18	47.92	43.04	73.23	65.22	48.5	81.76	66.48	66.28	71.86	40.1
Merged-chr13-20562442-3	chr13	20562352	20562552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	MIR3|SINE|MIR	89462.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	45.63	28.93	34.23	34.99	59.32	78.71	40.52	54.28	36.58	40.67	35.68	17.54
Merged-chr15-76671574-3	chr15	76671467	76671667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-76.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	123.16	95.33	144.9	106.18	125.59	160.55	72.08	119.78	154.6	143.6	231.64	97.43
Merged-chr11-83640361-3	chr11	83640249	83640449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9029.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	50.07	41.75	42.78	43.44	92.05	75.26	66.1	78.0	88.9	75.82	69.34	53.88
Merged-chr5-110107739-3	chr5	110107634	110107834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145147, intron 1 of 9)	CpG-11316	463.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	88.03	76.72	95.27	89.69	83.46	84.98	71.75	115.91	137.29	128.54	230.64	93.67
Merged-chr1-34839428-3	chr1	34839315	34839515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3635.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	49.67	36.72	58.76	35.8	58.09	50.17	24.58	67.32	54.09	38.66	43.72	28.19
Merged-chr10-43996385-3	chr10	43996272	43996472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	8474.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	78.74	70.18	107.82	59.12	83.87	83.1	66.77	62.08	81.04	93.89	90.95	34.15
Merged-chr18-5123441-3	chr18	5123346	5123546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42285.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	7.27	13.83	24.53	16.49	33.14	22.26	42.85	30.64	23.8	20.59	30.65	13.47
Merged-chr19-37482867-3	chr19	37482731	37482931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	17577.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	48.46	24.9	83.29	38.61	40.91	42.02	51.15	49.29	35.01	43.18	50.75	36.97
Merged-chr17-65635946-3	chr17	65635852	65636052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3804.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	59.36	92.06	58.76	61.94	104.73	159.92	104.63	85.79	89.1	135.07	103.51	47.62
Merged-chr10-78087302-3	chr10	78087179	78087379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17911.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	65.41	61.88	83.86	75.21	87.14	84.35	60.12	81.62	86.54	81.84	97.48	54.82
Merged-chr2-83724417-3	chr2	83724318	83724518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	21.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	119.93	90.55	119.8	167.72	72.41	99.4	88.36	131.16	121.16	135.57	152.25	76.44
Merged-chr13-49682054-3	chr13	49681926	49682126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172015)	promoter-TSS (NM_172015)	-104.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	70.66	58.61	79.29	66.36	76.91	79.02	59.46	70.29	99.33	82.35	102.51	54.51
Merged-chr2-3284748-1	chr2	3284648	3284848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008708, intron 1 of 13)	CpG	536.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	13.73	9.81	13.69	6.44	13.09	8.47	13.62	10.82	18.29	16.07	18.59	20.99
Merged-chr18-20736024-3	chr18	20735948	20736148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10356.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	42.4	35.97	53.05	53.49	23.73	40.14	22.26	46.6	49.96	30.13	45.73	30.07
Merged-chr5-74944250-3	chr5	74944151	74944351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4943.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	29.88	36.97	36.51	31.77	54.0	58.64	43.51	84.14	60.38	57.74	88.94	37.28
Merged-chr12-76540369-3	chr12	76540237	76540437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6777.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	20.19	22.13	23.96	17.7	22.5	15.68	22.92	16.6	29.7	10.04	14.07	14.41
Merged-chr14-50807800-3	chr14	50807727	50807927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002142)	promoter-TSS (NR_002142)	-56.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	222.9	245.24	171.14	204.72	206.6	277.83	158.11	174.48	266.71	261.09	239.18	166.34
Merged-chr18-80690119-3	chr18	80690036	80690236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	18037.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	47.24	44.52	47.35	53.09	61.37	47.35	55.14	63.42	53.3	38.16	53.77	42.92
Merged-chr17-56507818-3	chr17	56507721	56507921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4662.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	70.26	53.07	47.92	48.67	111.28	104.11	57.47	67.29	78.68	90.38	102.0	45.42
Merged-chr9-13298991-3	chr9	13298906	13299106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52050.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	24.23	25.66	30.8	28.15	33.14	37.63	32.22	52.74	31.27	24.6	33.16	19.42
Merged-chr15-34443352-3	chr15	34443269	34443469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028101)	promoter-TSS (NR_028101)	-93.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	90.45	114.45	103.25	117.84	126.82	114.14	107.62	128.13	127.45	98.91	192.95	87.4
Merged-chr8-84665095-3	chr8	84665010	84665210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2258.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	27.46	18.61	25.67	26.14	24.55	14.11	30.56	19.91	36.58	33.14	44.72	27.88
Merged-chr13-37772893-3	chr13	37772815	37773015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53123.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	27.05	14.84	21.68	16.49	25.77	31.98	19.27	23.19	24.59	39.16	34.67	17.54
Merged-chr7-88251680-3	chr7	88251575	88251775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26410.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	37.55	55.08	70.74	65.56	40.5	65.85	74.41	52.91	38.16	52.72	67.84	40.72
Merged-chr18-20896193-6	chr18	20896076	20896276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-98.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	23.02	39.74	29.09	47.86	39.27	31.67	56.47	30.45	26.95	32.13	35.68	26.63
Merged-chr4-132605975-3	chr4	132605895	132606095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33051.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	84.8	75.71	91.84	70.79	90.0	131.07	79.39	71.05	108.97	105.94	128.13	82.08
Merged-chr9-86571874-3	chr9	86571753	86571953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145969)	promoter-TSS (NM_001145969)	-11.0	NM_028352	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	108.22	97.09	128.92	105.78	167.32	165.25	105.63	161.61	201.41	208.37	316.06	136.58
Merged-chr1-60913524-2	chr1	60913420	60913620	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009843, intron 3 of 3)	intron (NM_009843, intron 3 of 3)	4495.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	21.8	12.32	15.4	20.11	22.5	10.03	2.66	16.6	20.65	20.59	28.14	20.05
Merged-chr6-13838709-3	chr6	13838648	13838848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330666, exon 2 of 4)	5' UTR (NM_001330666, exon 2 of 4)	1194.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	6.86	15.85	10.84	17.29	16.77	20.07	15.94	13.88	22.23	23.1	29.65	14.1
Merged-chr8-120436904-3	chr8	120436826	120437026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51940.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	29.07	35.97	38.79	24.94	27.82	41.71	25.24	34.32	55.27	43.68	51.76	18.48
Merged-chr7-127026868-1	chr7	127026768	127026968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-389.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	38.36	41.0	41.07	28.15	28.23	36.69	25.91	32.41	59.2	53.73	51.25	32.58
Merged-chr19-45363639-3	chr19	45363535	45363735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-99.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	202.71	165.51	200.8	209.95	188.19	254.62	187.01	179.78	262.78	224.94	252.75	165.09
Merged-chr18-50033034-3	chr18	50032935	50033135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	2051.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	78.74	81.24	67.88	37.0	73.23	95.01	59.13	57.53	46.81	59.75	42.21	15.66
Merged-chr14-20765910-4	chr14	20765801	20766001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039139, intron 7 of 18)	intron (NM_001039139, intron 7 of 18)	28187.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	17.36	11.82	28.52	13.27	22.91	22.26	42.85	26.64	14.75	15.06	26.13	10.34
Merged-chr4-19575081-3	chr4	19574979	19575179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	13.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	164.34	157.96	193.38	172.14	176.32	179.99	136.19	201.51	197.87	199.34	260.79	133.76
Merged-chr2-131262450-3	chr2	131262356	131262556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355683)	promoter-TSS (NM_001355683)	-44.0	NM_001355683	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	92.47	95.83	90.13	92.91	118.64	109.75	63.44	98.72	102.28	112.97	145.72	63.59
Merged-chr8-84222696-3	chr8	84222613	84222813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-13806.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	86.01	94.83	133.49	121.06	114.14	84.66	89.69	117.67	45.63	31.13	64.32	26.94
Merged-chr7-31008337-3	chr7	31008214	31008414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26393.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	34.32	19.37	30.8	34.59	48.27	32.61	29.9	65.5	52.32	54.23	86.43	41.66
Merged-chr6-134830103-3	chr6	134830013	134830213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-86.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	201.9	186.89	181.41	229.25	195.96	228.59	242.82	214.51	221.47	235.49	261.29	157.57
Merged-chr12-5119900-3	chr12	5119807	5120007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202554.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	26.65	38.99	34.8	38.61	46.64	62.71	34.55	82.74	64.51	43.68	128.13	51.69
Merged-chr11-120633992-1	chr11	120633892	120634092	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-445.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	25.04	17.61	9.7	18.1	23.73	37.0	15.28	27.31	33.24	23.6	30.65	34.15
Merged-chr2-75683091-3	chr2	75682980	75683180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	21583.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	46.03	57.85	68.45	47.46	65.05	110.38	52.82	77.92	59.99	59.75	65.32	52.63
Merged-chr13-60895515-3	chr13	60895413	60895613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001145801, exon 4 of 4)	3' UTR (NM_001145801, exon 4 of 4)	1934.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	20.19	15.34	37.65	30.57	13.09	21.01	30.56	44.44	23.01	19.08	54.77	34.77
Merged-chr8-60983318-3	chr8	60983206	60983406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	5.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	113.47	113.94	120.94	167.72	193.1	185.01	151.47	227.69	224.03	191.3	282.9	113.72
Merged-chr11-5741171-3	chr11	5741069	5741269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361590)	promoter-TSS (NM_001361590)	7.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	29.88	24.9	24.53	20.91	41.32	27.28	24.25	31.63	43.47	31.63	55.78	28.82
Merged-chr4-41756150-3	chr4	41756015	41756215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	-95.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	21.0	22.89	7.42	21.72	17.59	24.15	14.95	15.93	22.03	22.59	28.14	20.36
Merged-chr3-137947732-3	chr3	137947644	137947844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	29189.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	50.07	50.05	55.9	65.16	47.46	64.6	46.5	54.2	62.15	51.72	73.86	21.62
Merged-chr9-96718594-3	chr9	96718504	96718704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175537, intron 1 of 2)	MIRb|SINE|MIR	841.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	14.94	12.07	17.11	15.69	25.77	14.42	14.95	26.05	19.28	18.58	25.63	16.6
Merged-chr16-91382577-3	chr16	91382496	91382696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	MTEa-int|LTR|ERVL-MaLR	9813.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	52.09	38.23	72.45	78.03	69.96	76.2	58.46	81.79	72.18	45.19	81.4	43.54
Merged-chr5-63830897-2	chr5	63830804	63831004	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18409.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.25	3.27	7.99	7.24	9.82	4.7	6.64	14.41	6.88	8.03	17.59	14.41
Merged-chr10-118766217-3	chr10	118766118	118766318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102685.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	31.09	32.45	43.35	46.66	45.41	39.51	32.55	37.6	62.94	51.21	87.93	30.39
Merged-chr5-135713593-3	chr5	135713455	135713655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	22334.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	61.78	56.59	59.9	48.67	55.23	86.55	50.49	82.01	92.44	85.86	118.08	68.61
Merged-chr18-11839426-3	chr18	11839315	11839515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	-38.0	NR_045421	621998.0	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	38.36	24.9	33.09	39.01	39.68	33.55	18.27	33.28	20.26	19.58	24.62	19.11
Merged-chr12-86833914-3	chr12	86833828	86834028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50886.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	102.56	121.49	98.12	76.42	146.05	175.91	121.91	138.31	158.73	175.23	195.47	95.86
Merged-chr5-139149403-1	chr5	139149303	139149503	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	598.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	7.27	6.54	7.99	5.23	9.82	11.92	4.65	9.73	10.03	14.06	8.04	11.9
Merged-chr18-38601245-4	chr18	38601178	38601378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-10.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	47.65	43.26	57.05	38.61	36.82	41.71	35.87	44.55	38.94	43.18	59.8	25.69
Merged-chr19-42753398-3	chr19	42753322	42753522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-647.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	97.31	58.86	74.73	65.96	100.64	95.95	76.07	95.38	72.18	95.4	88.94	52.94
Merged-chr6-131269755-3	chr6	131269650	131269850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22388.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	101.35	91.81	122.65	141.17	117.82	115.71	96.0	135.03	92.84	82.85	89.44	56.07
Merged-chr2-180702047-3	chr2	180701921	180702121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	81.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	43.61	65.4	44.5	36.2	42.55	51.74	51.49	42.56	54.88	56.24	71.35	45.11
Merged-chr11-3193187-3	chr11	3193200	3193400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 1 of 32)	CpG	163.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	128.0	133.81	83.29	141.17	297.01	211.98	372.36	302.44	60.97	86.86	79.89	71.74
Merged-chr9-121301149-1	chr9	121301049	121301249	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3647.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.4	1.51	2.28	0.0	0.0	0.0	2.99	0.53	18.1	25.11	36.68	16.29
Merged-chr17-27820720-3	chr17	27820617	27820817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-175.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	134.06	143.37	115.8	109.4	127.23	185.01	112.94	97.4	181.94	224.44	192.45	94.92
Merged-chr11-120190074-3	chr11	120189969	120190169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030682)	promoter-TSS (NR_030682)	-213.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	41.19	34.46	34.8	30.57	21.27	53.93	23.58	24.45	58.02	35.65	52.26	25.37
Merged-chr17-34858835-3	chr17	34858738	34858938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008198, intron 10 of 17)	intron (NM_008198, intron 10 of 17)	-1206.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	17.77	8.8	20.54	21.72	18.41	21.01	18.93	15.73	28.52	19.58	34.67	11.59
Merged-chr14-10134058-3	chr14	10133934	10134134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	249939.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	37.96	25.66	45.07	58.72	40.09	47.66	38.2	61.91	63.33	42.18	77.38	31.95
Merged-chr19-40641052-3	chr19	40640967	40641167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-18703.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	31.9	18.86	45.64	37.4	82.64	75.57	75.73	83.72	67.27	80.34	66.83	41.66
Merged-chr16-17921969-3	chr16	17921833	17922033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	6286.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	82.78	99.35	119.8	103.37	107.59	139.54	99.65	80.64	128.04	126.03	182.9	76.75
Merged-chr1-134302925-3	chr1	134302820	134303020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144855, intron 25 of 28)	intron (NM_001144855, intron 25 of 28)	12916.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	55.32	52.32	57.62	56.31	48.27	58.95	42.52	51.34	43.86	42.18	54.77	38.22
Merged-chr12-112860996-1	chr12	112860896	112861096	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019925)	promoter-TSS (NM_019925)	-80.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	14.13	4.28	6.85	7.24	19.23	13.17	2.99	5.3	11.6	2.01	5.02	7.83
Merged-chr9-44089051-3	chr9	44088977	44089177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	4157.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	41.59	42.01	38.79	36.6	47.87	42.33	34.88	54.76	42.29	33.64	42.21	25.06
Merged-chr7-80179495-1	chr7	80179395	80179595	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7346.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	1.62	0.5	0.0	0.0	3.27	0.63	0.0	0.81	43.66	37.16	43.21	32.27
Merged-chr7-89216851-3	chr7	89216748	89216948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	121939.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	23.02	21.88	24.53	34.99	51.55	32.61	16.61	33.2	38.16	42.18	32.16	23.81
Merged-chr15-101134535-3	chr15	101134433	101134633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277255, intron 3 of 11)	intron (NM_001277255, intron 3 of 11)	6011.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	77.93	56.09	63.32	63.15	65.05	65.54	35.54	59.75	65.5	62.76	77.38	57.64
Merged-chr7-19461753-3	chr7	19461634	19461834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3240.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	43.61	22.89	38.79	33.78	36.0	45.78	31.89	49.26	59.99	34.14	53.77	36.03
Merged-chr19-42752688-3	chr19	42752631	42752831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	44.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	50.47	52.07	66.17	59.12	53.18	39.2	51.49	53.33	21.83	31.63	27.13	19.74
Merged-chr4-156210160-3	chr4	156210059	156210259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-5768.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	22.61	31.69	26.81	18.9	15.14	32.61	17.27	26.41	26.36	25.61	41.2	16.6
Merged-chr8-126494608-3	chr8	126494510	126494710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19545.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	100.14	53.07	135.77	73.2	110.46	113.2	115.6	145.32	99.72	103.94	141.2	73.3
Merged-chr14-76195503-3	chr14	76195380	76195580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55982.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	53.3	55.59	82.72	75.21	49.91	69.93	76.4	85.4	57.43	48.7	76.38	35.71
Merged-chr7-35234907-3	chr7	35234805	35235005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19560.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	75.11	47.04	58.19	60.33	52.37	58.32	64.77	56.38	79.66	70.29	108.03	62.34
Merged-chr17-87447030-5	chr17	87446939	87447139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-104.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	33.52	37.98	15.97	26.95	13.5	42.33	27.57	14.75	37.57	45.19	30.15	27.88
Merged-chr10-34282697-1	chr10	34282597	34282797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009433, exon 1 of 1)	exon (NM_009433, exon 1 of 1)	507.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	9.29	16.35	15.97	14.48	20.46	20.38	21.59	18.2	27.54	19.08	18.59	18.8
Merged-chr9-70678876-3	chr9	70678773	70678973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-109.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	164.75	164.5	211.64	182.6	196.78	271.87	189.01	213.03	273.0	266.12	324.6	182.01
Merged-chr10-8762929-3	chr10	8762828	8763028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123142.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	41.99	24.9	29.09	28.15	42.55	43.27	32.88	28.96	81.04	73.81	84.42	25.69
Merged-chr1-183388910-3	chr1	183388810	183389010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277959)	promoter-TSS (NM_001277959)	25.0	NM_001277957	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	37.55	31.94	21.11	36.6	50.73	43.59	23.92	38.92	50.35	40.67	61.3	20.05
Merged-chr13-109299046-3	chr13	109298929	109299129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-25715.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	76.72	70.93	63.89	109.0	89.59	88.11	99.98	117.59	115.85	93.89	138.69	66.1
Merged-chr9-57073615-3	chr9	57073503	57073703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110351, intron 1 of 21)	intron (NM_001110351, intron 1 of 21)	1563.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	190.59	199.46	233.89	182.2	227.05	255.88	181.37	188.66	249.79	291.22	262.8	156.63
Merged-chr15-76640008-3	chr15	76639904	76640104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183091)	promoter-TSS (NM_183091)	-75.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	64.61	49.8	22.25	57.11	63.0	65.22	34.21	55.4	99.92	82.85	70.35	35.71
Merged-chr11-20113406-1	chr11	20113306	20113506	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-455.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	21.4	19.87	27.38	28.56	24.55	45.15	22.59	39.34	44.45	45.69	31.66	20.99
Merged-chr11-99448937-1	chr11	99448837	99449037	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10784.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	2.83	4.28	1.14	6.84	7.36	2.51	17.27	12.08	8.85	5.02	1.51	5.95
Merged-chr2-153108500-3	chr2	153108395	153108595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010407)	promoter-TSS (NM_010407)	27.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	21.4	26.16	18.83	24.94	29.86	27.28	18.27	19.07	39.14	43.18	40.2	22.24
Merged-chr11-98709283-3	chr11	98709179	98709379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	7966.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	32.3	21.13	24.53	26.95	21.27	27.28	32.88	25.93	27.14	27.62	35.68	27.88
Merged-chr9-108306821-3	chr9	108306726	108306926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	29.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	61.38	40.24	40.5	52.69	48.27	52.99	36.54	61.54	73.76	56.74	135.17	45.74
Merged-chr8-94012729-3	chr8	94012629	94012829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011787)	promoter-TSS (NM_011787)	-89.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	44.82	30.18	41.64	25.34	49.5	59.58	35.54	48.22	51.73	32.64	63.82	28.82
Merged-chr7-116457179-3	chr7	116457087	116457287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-13729.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	67.84	61.37	49.06	43.84	78.55	89.37	63.11	78.65	105.42	90.88	54.77	60.77
Merged-chr1-144308484-3	chr1	144308393	144308593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59389.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	18.57	13.08	34.23	26.95	24.55	36.06	31.89	51.59	22.03	47.2	38.69	18.8
Merged-chr5-92374879-3	chr5	92374778	92374978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11582.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	114.27	123.0	150.03	95.72	114.96	145.81	123.24	81.03	124.9	115.99	139.19	57.64
Merged-chr16-37654460-3	chr16	37654358	37654558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026610)	promoter-TSS (NM_026610)	-90.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	137.29	101.11	87.85	102.56	163.64	154.9	86.36	106.37	149.88	148.12	199.99	92.41
Merged-chr13-92637000-3	chr13	92636892	92637092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	25854.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	52.09	29.68	46.78	42.23	51.55	46.1	50.82	81.81	50.16	34.14	67.33	28.19
Merged-chr10-95548291-3	chr10	95548196	95548396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	11025.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	41.19	46.03	51.91	41.43	52.37	75.57	53.81	37.23	68.84	60.75	61.3	22.87
Merged-chr3-142273449-3	chr3	142273363	142273563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-104038.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	21.8	18.61	13.12	8.45	21.68	16.93	11.96	18.84	36.58	22.59	39.19	15.04
Merged-chr5-8675783-3	chr5	8675605	8675805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011076, intron 6 of 29)	Tigger7|DNA|TcMar-Tigger	-52753.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	15.34	17.61	23.96	38.61	42.55	30.1	24.91	48.14	26.55	24.1	27.64	14.41
Merged-chr7-140882357-3	chr7	140882255	140882455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	-39.0	NM_011875	23997.0	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	68.24	67.16	67.31	59.12	64.64	99.09	34.88	56.72	88.31	74.31	115.57	50.75
Merged-chr5-121837748-3	chr5	121837674	121837874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-915.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	42.8	36.47	54.19	37.4	32.32	59.58	59.79	35.02	25.77	23.6	22.61	15.66
Merged-chr4-126609838-3	chr4	126609744	126609944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145950)	promoter-TSS (NM_001145950)	-10.0	NM_001013755	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	47.24	46.03	51.91	35.39	58.09	83.41	51.49	59.69	69.82	51.72	99.49	59.83
Merged-chr1-84924290-3	chr1	84924195	84924395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027921, intron 2 of 4)	intron (NM_027921, intron 2 of 4)	10788.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	25.84	29.93	30.23	63.55	49.09	54.25	42.19	66.56	37.57	46.7	67.33	30.07
Merged-chr17-35821667-3	chr17	35821580	35821780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-33.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	134.87	155.44	126.64	129.51	125.19	205.7	110.95	65.78	197.08	225.95	200.49	77.06
Merged-chr7-114163138-3	chr7	114162948	114163148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45267.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	11.31	11.82	9.7	16.09	5.32	11.29	13.29	8.44	34.22	22.09	42.71	21.62
Merged-chr10-99354101-3	chr10	99353976	99354176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90845.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	22.21	25.15	34.8	23.33	50.32	49.23	51.15	44.89	62.74	32.13	67.84	34.46
Merged-chr7-126377465-3	chr7	126377350	126377550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045537, exon 1 of 13)	non-coding (NR_045537, exon 1 of 13)	484.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	62.99	48.54	41.64	39.42	58.91	73.06	41.19	42.95	100.31	91.38	80.4	56.7
Merged-chr17-27204470-3	chr17	27204337	27204537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146075)	promoter-TSS (NM_146075)	1.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	71.88	68.92	61.61	68.78	71.59	89.68	49.16	56.78	94.41	119.0	90.95	48.87
Merged-chr8-127829859-3	chr8	127829774	127829974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	448351.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	16.56	28.42	24.53	47.86	28.64	18.81	33.22	48.17	33.04	25.61	40.7	32.58
Merged-chr9-123815652-3	chr9	123815543	123815743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	9166.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	54.51	41.5	45.64	55.91	41.73	53.93	29.56	43.6	77.69	85.86	66.33	38.22
Merged-chr17-7925902-3	chr17	7925800	7926000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-100.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	104.58	78.73	89.56	51.08	72.82	99.09	50.16	80.58	107.2	93.89	94.97	58.27
Merged-chr12-118302159-3	chr12	118302076	118302276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	-736.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	384.01	363.96	447.81	458.51	470.88	520.84	477.66	606.65	499.98	423.78	684.38	291.96
Merged-chr5-106696729-4	chr5	106696636	106696836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026856)	promoter-TSS (NM_026856)	94.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	60.17	58.86	66.74	46.25	61.77	64.28	57.47	61.46	67.66	58.75	96.98	41.98
Merged-chr9-21936927-3	chr9	21936831	21937031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290299)	promoter-TSS (NM_001290299)	-79.0	NM_001290299	235044.0	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	93.28	66.15	79.86	73.6	83.05	138.29	58.46	85.35	115.46	87.37	117.58	68.29
Merged-chr8-120101396-3	chr8	120101300	120101500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133967)	promoter-TSS (NM_133967)	72.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	37.55	37.48	45.64	37.4	49.5	48.6	43.51	64.04	63.33	51.72	96.48	49.5
Merged-chr4-122991383-3	chr4	122991263	122991463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-4568.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	51.28	41.75	40.5	38.61	30.68	57.38	25.91	25.15	66.48	60.25	46.73	37.59
Merged-chr9-116175776-3	chr9	116175673	116175873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	-410.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	14.54	14.84	32.52	26.14	18.0	12.86	21.92	22.79	17.51	13.56	18.59	15.04
Merged-chr7-122823609-3	chr7	122823509	122823709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146850.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	56.13	34.71	34.23	28.15	47.46	90.94	47.17	49.85	108.97	79.83	92.46	46.99
Merged-chr16-92466330-3	chr16	92466230	92466430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081549)	promoter-TSS (NM_001081549)	-161.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	195.84	222.85	156.31	197.08	219.28	260.27	198.64	207.28	262.38	268.12	287.92	150.68
Merged-chr13-96542580-3	chr13	96542467	96542667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164222)	promoter-TSS (NM_001164222)	12.0	NM_012048	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	172.82	191.92	208.79	246.95	207.42	232.98	184.35	246.25	255.69	228.46	339.18	162.59
Merged-chr17-35809651-3	chr17	35809569	35809769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12044.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	33.52	22.64	50.2	41.83	27.41	23.2	51.49	35.66	21.83	36.65	29.65	35.09
Merged-chr11-115199010-3	chr11	115198904	115199104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11517.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	34.32	28.93	71.31	44.64	23.73	47.35	21.26	19.71	64.32	69.29	69.34	52.63
Merged-chr8-90908316-3	chr8	90908211	90908411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	CpG	-23938.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	196.65	205.25	239.02	210.75	198.42	235.81	219.9	194.41	265.14	272.14	351.24	180.75
Merged-chr9-120577308-3	chr9	120577238	120577438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	7.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	85.2	64.39	54.19	58.72	60.55	72.12	46.17	66.62	104.44	111.47	123.11	51.69
Merged-chr16-77084285-3	chr16	77084193	77084393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70224.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	124.37	109.41	94.7	104.17	108.41	158.98	94.34	126.51	155.58	149.63	184.41	90.53
Merged-chr4-148626760-5	chr4	148626639	148626839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131120, exon 1 of 8)	non-coding (NR_131120, exon 1 of 8)	257.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	54.51	46.78	25.1	34.59	42.55	42.33	16.61	38.02	55.66	70.29	51.25	27.25
Merged-chr14-31389997-3	chr14	31389908	31390108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27669.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	135.27	125.01	127.21	138.36	202.51	218.87	193.99	187.57	218.91	275.15	321.59	150.68
Merged-chr10-127576546-3	chr10	127576458	127576658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008512, exon 24 of 89)	exon (NM_008512, exon 24 of 89)	-41999.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	29.07	31.94	26.81	17.7	32.32	41.39	24.58	27.64	41.11	34.65	39.7	23.49
Merged-chr14-67007670-3	chr14	67007582	67007782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009761, intron 1 of 5)	intron (NM_009761, intron 1 of 5)	1195.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	33.52	16.85	35.37	22.93	42.96	45.47	44.51	47.16	43.47	32.13	52.76	31.33
Merged-chr4-134396253-3	chr4	134396141	134396341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-79.0	NM_133880	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	117.91	95.83	98.69	102.96	128.87	174.66	80.05	110.19	126.27	136.57	164.81	76.75
Merged-chr6-6542346-3	chr6	6542234	6542434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	36324.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	34.32	29.18	37.08	23.73	59.73	69.93	36.87	60.93	59.4	70.29	111.55	58.89
Merged-chr13-73763573-3	chr13	73763451	73763651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011390)	promoter-TSS (NM_011390)	-109.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	51.28	48.54	29.09	50.68	56.46	63.34	47.17	54.28	62.74	66.78	44.22	37.28
Merged-chr5-122708139-2	chr5	122708034	122708234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310718, intron 1 of 10)	intron (NM_001310718, intron 1 of 10)	590.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	58.55	36.97	66.74	31.37	56.87	73.69	40.52	48.67	51.93	35.65	36.68	30.07
Merged-chr12-34783820-3	chr12	34783730	34783930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	133265.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	30.28	31.69	34.23	51.88	41.73	35.43	21.59	53.83	47.4	29.12	60.8	27.88
Merged-chr3-30793269-3	chr3	30793170	30793370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027016, exon 1 of 8)	5' UTR (NM_027016, exon 1 of 8)	394.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	58.95	45.53	38.22	68.37	54.0	63.97	43.85	69.95	114.67	115.48	94.47	71.11
Merged-chr9-121632134-3	chr9	121632044	121632244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026915, intron 1 of 5)	MLT1F1|LTR|ERVL-MaLR	9449.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	77.12	56.09	66.17	80.84	66.27	89.05	59.13	90.56	99.13	93.39	110.04	86.15
Merged-chr2-50687916-3	chr2	50687812	50688012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-221772.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	18.17	13.33	19.97	16.49	49.91	53.62	32.88	34.46	46.03	45.69	46.23	31.95
Merged-chr7-140036529-3	chr7	140036436	140036636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133755)	promoter-TSS (NM_133755)	138.0	NM_001286007	74237.0	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	49.26	82.75	65.6	78.83	60.55	62.09	71.42	46.57	69.63	71.8	76.88	60.46
Merged-chr2-170209389-3	chr2	170209308	170209508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66733.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	22.61	22.64	19.97	7.64	29.05	30.1	31.22	37.99	31.08	39.67	49.75	21.93
Merged-chr4-41774183-1	chr4	41774083	41774283	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347065)	promoter-TSS (NM_001347065)	-7.0	NM_001048179	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	1.62	0.25	0.0	0.0	0.0	0.0	0.0	0.0	57.63	35.15	60.3	22.24
Merged-chr8-75085067-3	chr8	75084964	75085164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8554.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	25.44	17.61	28.52	28.56	24.96	25.71	14.62	33.0	27.54	28.12	24.62	24.12
Merged-chr1-131555323-3	chr1	131555233	131555433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27430.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	21.4	10.56	22.82	19.31	30.27	21.95	15.28	22.21	27.54	29.12	44.22	18.8
Merged-chr11-3184167-3	chr11	3184085	3184285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	L1_Mus1|LINE|L1	9278.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	14.54	9.56	19.97	19.31	19.23	9.72	13.62	5.75	7.08	17.57	5.02	10.34
Merged-chr9-110117296-5	chr9	110117262	110117462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001252682, exon 1 of 23)	5' UTR (NM_001252682, exon 1 of 23)	254.0	NM_001252682	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	17.36	23.39	23.39	32.58	27.0	32.61	28.57	21.31	22.03	24.1	41.2	29.45
Merged-chr17-22225654-3	chr17	22225575	22225775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-61.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	39.98	26.91	27.38	41.83	29.05	28.22	33.22	23.13	110.93	99.42	123.11	67.04
Merged-chr11-94370961-3	chr11	94370877	94371077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	21999.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	20.19	13.08	18.83	20.11	106.37	118.53	83.37	88.85	62.74	77.32	74.87	36.65
Merged-chr12-17881816-3	chr12	17881713	17881913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	191004.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	81.97	61.62	74.73	96.53	120.69	123.86	96.99	123.59	114.67	122.01	182.4	92.1
Merged-chr4-59189277-3	chr4	59189187	59189387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-263.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	37.55	34.96	31.38	30.57	27.0	38.26	54.81	30.98	34.03	40.67	45.22	26.94
Merged-chr10-37259254-3	chr10	37259152	37259352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120326.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	26.65	34.21	41.07	36.6	27.0	41.39	29.56	35.16	46.03	36.15	39.19	12.84
Merged-chr10-54122019-3	chr10	54121963	54122163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	46141.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	26.25	27.67	40.5	40.22	39.27	16.62	35.87	35.94	44.25	27.62	57.79	46.68
Merged-chr17-34604016-5	chr17	34603926	34604126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-465.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	198.26	181.85	181.41	156.05	199.64	250.23	151.8	147.39	217.54	285.7	225.11	152.87
Merged-chr10-78482081-3	chr10	78481997	78482197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-17149.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	45.63	27.92	50.2	40.62	50.73	59.27	51.15	51.28	47.6	49.21	75.37	40.72
Merged-chr6-129397483-4	chr6	129397418	129397618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001204239, exon 1 of 5)	5' UTR (NM_001204239, exon 1 of 5)	221.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	14.13	15.85	21.11	34.19	21.68	20.38	10.3	23.47	39.73	36.65	66.33	27.57
Merged-chr11-46437462-1	chr11	46437362	46437562	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001104556, intron 1 of 1)	CpG	501.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	12.52	13.58	11.41	11.66	14.32	25.71	22.92	14.16	15.34	20.08	15.07	12.22
Merged-chr10-127668242-3	chr10	127668134	127668334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	1111.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	39.98	36.72	64.46	39.42	36.0	47.04	33.22	29.44	70.22	74.81	89.44	50.44
Merged-chr4-55824211-3	chr4	55824110	55824310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-291735.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	41.19	37.48	42.78	48.67	48.27	43.27	41.19	61.04	39.14	32.13	74.37	34.46
Merged-chr5-43877621-3	chr5	43877527	43877727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	MTEa|LTR|ERVL-MaLR	8818.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	76.72	56.85	113.52	116.64	87.14	83.1	90.02	119.52	73.76	60.25	98.99	49.5
Merged-chr6-72601943-3	chr6	72601835	72602035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026159, intron 3 of 10)	intron (NM_026159, intron 3 of 10)	3307.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	16.15	15.85	25.67	27.75	24.55	30.42	16.94	28.51	35.99	27.62	43.21	23.49
Merged-chr10-78426557-3	chr10	78426450	78426650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007793, intron 1 of 2)	intron (NM_007793, intron 1 of 2)	880.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	23.42	18.86	17.68	22.52	37.64	41.08	24.58	30.5	34.81	39.67	28.14	24.12
Merged-chr1-13383712-3	chr1	13383612	13383812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-9629.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	44.82	32.7	50.77	18.5	39.27	56.13	28.23	38.05	69.63	69.29	54.27	28.82
Merged-chr16-18066409-3	chr16	18066330	18066530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289813)	promoter-TSS (NM_001289813)	27.0	NM_001289813	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	40.38	38.74	62.18	55.1	64.23	52.37	52.48	64.46	62.15	60.25	71.35	36.34
Merged-chr10-81365853-3	chr10	81365741	81365941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-21.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	21.8	24.4	27.95	29.76	46.23	40.76	20.26	40.01	39.34	34.65	62.31	28.19
Merged-chr17-10500983-3	chr17	10500947	10501147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	44831.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	35.94	22.13	22.82	32.98	54.41	42.02	34.55	45.03	35.6	23.1	43.72	25.69
Merged-chr1-106321606-3	chr1	106321511	106321711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	149742.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	52.09	39.99	58.19	57.51	39.27	42.96	46.17	68.5	65.1	44.19	50.75	39.16
Merged-chr2-172345470-3	chr2	172345360	172345560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-117.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	226.53	228.39	232.75	261.43	270.83	364.06	254.11	265.37	360.14	364.03	489.42	203.31
Merged-chr16-33380835-3	chr16	33380764	33380964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	89.0	NM_011749	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	60.17	48.8	27.95	45.45	42.14	42.33	23.25	30.53	39.34	47.2	36.18	22.87
Merged-chr7-64248426-1	chr7	64248326	64248526	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039104, intron 26 of 26)	intron (NM_001039104, intron 26 of 26)	1673.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	6.06	1.76	1.71	15.69	23.73	5.64	24.25	31.35	4.33	1.51	11.56	5.33
Merged-chr6-38552099-3	chr6	38552010	38552210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170848, intron 1 of 8)	CpG	776.0	NM_001170849	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	123.56	129.03	144.33	135.14	161.6	168.39	107.96	144.08	153.81	181.26	236.17	130.32
Merged-chr18-56572937-3	chr18	56572862	56573062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019996)	promoter-TSS (NM_019996)	-23.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	83.59	71.69	70.17	100.55	85.09	91.25	68.1	110.72	109.75	99.42	210.54	91.79
Merged-chr1-58393025-3	chr1	58392926	58393126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-110.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	67.43	76.72	66.17	50.27	70.37	70.87	77.06	73.85	79.27	104.44	74.87	66.73
Merged-chr19-4839385-3	chr19	4839291	4839491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207268)	promoter-TSS (NM_207268)	25.0	NM_207268	399599.0	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	98.53	82.5	81.58	94.52	122.73	161.49	65.77	101.36	147.12	113.48	152.25	57.95
Merged-chr16-13780735-3	chr16	13780639	13780839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	40.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	73.89	45.02	62.75	65.96	99.0	79.02	67.76	99.9	93.43	99.42	122.61	57.95
Merged-chr12-55836752-3	chr12	55836643	55836843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155205, intron 1 of 10)	CpG	377.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	14.54	17.1	19.4	22.12	29.05	18.19	35.54	31.43	23.8	20.08	24.62	15.98
Merged-chr12-111908171-3	chr12	111908075	111908275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011625)	promoter-TSS (NM_011625)	-120.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	69.45	51.06	53.62	47.46	67.5	67.42	42.52	59.3	80.64	88.37	88.94	42.29
Merged-chr8-14888746-3	chr8	14888626	14888826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_012000, exon 1 of 3)	5' UTR (NM_012000, exon 1 of 3)	190.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	132.44	144.38	113.52	159.67	142.78	190.03	177.38	148.96	139.85	189.29	172.85	114.66
Merged-chr17-88530058-3	chr17	88529936	88530136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-88.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	132.44	120.48	171.14	118.65	162.0	145.81	121.91	114.22	173.87	211.89	233.15	103.06
Merged-chr1-36369192-3	chr1	36369089	36369289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-8.0	NM_001310513	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	51.69	46.28	35.37	38.61	51.96	52.37	28.23	33.0	80.64	97.41	55.27	43.54
Merged-chr7-83883825-3	chr7	83883746	83883946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030705, exon 1 of 1)	5' UTR (NM_030705, exon 1 of 1)	495.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	37.15	39.24	53.05	52.69	54.41	62.09	48.16	54.76	49.76	84.86	79.39	43.54
Merged-chr10-84576480-3	chr10	84576285	84576485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-562.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	38.36	37.23	18.83	42.63	42.96	40.14	31.22	25.74	37.17	65.78	44.22	42.29
Merged-chr9-56108355-3	chr9	56108242	56108442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	18366.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	62.59	69.67	79.86	87.68	89.18	112.89	83.37	96.31	130.99	150.13	169.34	99.93
Merged-chr7-99377652-3	chr7	99377552	99377752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3866.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	64.2	50.56	80.43	76.42	63.0	57.07	54.81	68.69	66.68	40.67	86.43	41.04
Merged-chr13-13590286-3	chr13	13590201	13590401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-108.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	139.71	118.97	168.28	185.01	192.28	184.38	183.03	227.78	197.67	172.72	273.35	128.13
Merged-chr16-10543073-3	chr16	10542907	10543107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	47.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	72.68	71.94	76.44	61.54	75.28	74.63	92.01	100.77	88.31	85.86	129.64	57.64
Merged-chr11-61407998-3	chr11	61407923	61408123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-29948.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	32.3	20.12	21.11	39.82	30.27	38.57	18.27	25.71	36.78	37.66	31.15	26.63
Merged-chr1-180835836-3	chr1	180835722	180835922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-15329.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	28.27	17.86	29.66	21.72	27.0	29.48	25.58	27.67	31.47	17.07	26.63	24.12
Merged-chr6-125509940-1	chr6	125509840	125510040	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15180.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.85	5.28	11.41	0.8	4.5	6.27	1.66	2.47	33.24	23.1	39.19	16.29
Merged-chr16-77016171-3	chr16	77016080	77016280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	2111.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	25.04	24.15	26.24	23.73	35.18	26.34	15.28	40.93	47.8	27.62	44.22	20.36
Merged-chr1-23256156-3	chr1	23256044	23256244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16125.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	179.29	186.89	210.5	200.7	205.78	247.1	223.88	283.21	248.42	227.45	396.46	127.81
Merged-chr17-45552253-3	chr17	45552183	45552383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2606.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	21.0	15.09	27.38	10.05	17.59	18.5	10.63	15.28	21.64	26.61	25.12	15.04
Merged-chr3-30995794-3	chr3	30995692	30995892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	21.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	54.51	48.54	66.17	67.97	53.18	69.3	60.46	80.83	61.96	68.79	104.01	43.23
Merged-chr7-27196320-3	chr7	27196219	27196419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-48.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	178.07	172.55	169.43	181.39	170.6	222.95	164.76	170.24	239.57	277.16	256.77	147.86
Merged-chr10-127643870-3	chr10	127643780	127643980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	894.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	42.8	60.87	55.33	37.81	64.23	85.29	58.46	29.92	79.46	86.36	75.37	40.41
Merged-chr13-98872649-3	chr13	98872528	98872728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	18414.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	31.5	22.13	20.54	28.56	25.77	19.44	33.22	26.78	36.98	21.09	13.57	15.04
Merged-chr1-191326421-3	chr1	191326332	191326532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 1 of 7)	CpG	467.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	37.15	27.92	14.26	22.93	22.5	41.71	32.22	18.67	46.22	47.2	46.23	28.19
Merged-chr8-66438698-3	chr8	66438590	66438790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	47840.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	45.23	38.48	52.48	63.15	57.68	24.46	66.1	55.77	46.62	46.7	78.39	31.01
Merged-chr12-69184069-3	chr12	69183879	69184079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	88.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	84.39	110.67	84.43	117.44	79.37	108.5	101.31	72.34	113.1	93.89	124.62	75.81
Merged-chr11-71144844-3	chr11	71144758	71144958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004142)	promoter-TSS (NM_001004142)	-154.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	23.82	14.59	45.64	28.56	38.46	42.02	28.57	21.36	26.55	27.11	37.69	22.87
Merged-chr1-186117357-3	chr1	186117256	186117456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-46.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	133.66	170.79	187.68	185.41	227.05	206.02	140.18	252.62	269.46	260.09	338.67	169.79
Merged-chr3-7502896-3	chr3	7502805	7503005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	-521.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	17.36	20.63	19.97	21.72	27.41	15.99	30.56	35.55	34.42	37.16	44.72	17.23
Merged-chr3-149464810-3	chr3	149464708	149464908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	190071.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	106.2	65.65	112.95	163.7	123.55	148.01	157.12	188.97	146.53	129.54	248.73	119.98
Merged-chr17-72837464-3	chr17	72837358	72837558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357370)	promoter-TSS (NM_001357370)	-78.0	NM_001357369	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	72.28	86.27	79.86	94.11	85.91	88.11	108.29	78.73	84.97	92.89	121.6	73.3
Merged-chr9-112079146-1	chr9	112079046	112079246	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362012, intron 18 of 19)	intron (NM_001362012, intron 18 of 19)	39565.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	10.09	4.78	13.69	14.48	2.86	3.76	9.97	11.58	8.06	4.52	10.05	9.08
Merged-chr5-3344436-3	chr5	3344320	3344520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009873, exon 2 of 8)	exon (NM_009873, exon 2 of 8)	527.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	31.5	31.69	20.54	35.8	24.96	52.05	34.21	26.47	29.11	50.21	51.25	23.18
Merged-chr7-55911558-3	chr7	55911438	55911638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	50955.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	119.12	95.58	95.84	125.49	124.78	150.51	156.78	156.62	214.98	211.39	301.99	147.86
Merged-chr2-13538431-3	chr2	13538347	13538547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	MIR|SINE|MIR	6217.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	68.24	74.96	75.3	78.43	85.09	94.7	80.72	84.39	115.26	99.92	152.25	78.63
Merged-chr1-63181210-3	chr1	63181111	63181311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018796)	TTS (NM_018796)	2188.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	71.47	62.88	62.75	71.19	82.64	80.59	42.52	91.23	85.76	97.41	112.56	49.5
Merged-chr13-9082355-3	chr13	9082269	9082469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11512.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	48.46	32.45	47.92	44.24	70.37	81.53	48.5	74.02	95.39	79.83	88.94	43.86
Merged-chr12-69241974-3	chr12	69241881	69242081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178253, exon 1 of 13)	exon (NM_178253, exon 1 of 13)	149.0	NM_178253	271005.0	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	29.07	19.62	21.11	17.29	31.5	39.2	22.92	34.46	42.88	29.62	53.26	23.81
Merged-chr19-29463820-3	chr19	29463743	29463943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	52924.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	54.51	45.28	51.91	47.46	49.5	62.71	46.17	68.61	60.19	38.66	48.74	30.07
Merged-chr7-80404310-3	chr7	80404219	80404419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081454, intron 1 of 15)	intron (NM_001081454, intron 1 of 15)	1117.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	138.1	133.06	115.23	113.02	151.78	211.03	126.56	139.85	165.02	202.35	172.85	106.51
Merged-chr11-22287175-3	chr11	22287065	22287265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153078)	promoter-TSS (NM_153078)	-370.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	164.34	170.79	228.18	231.26	280.65	309.5	236.84	340.52	253.73	214.9	342.19	160.71
Merged-chr13-113615871-6	chr13	113615877	113616077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2587.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	38.36	36.47	58.19	63.55	36.82	34.18	51.15	45.36	49.57	48.2	109.04	39.78
Merged-chr9-65569656-3	chr9	65569565	65569765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	10422.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	79.95	62.38	95.27	98.14	76.09	93.44	84.37	98.94	98.54	98.41	118.08	69.23
Merged-chr10-17684028-3	chr10	17683935	17684135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39193.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	23.82	30.18	23.96	30.97	29.86	30.1	19.6	29.44	59.79	49.71	37.69	19.11
Merged-chr11-61469043-3	chr11	61468939	61469139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15047.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	22.21	13.83	29.66	18.9	29.46	24.15	28.23	43.93	34.81	35.65	25.63	26.31
Merged-chr4-148088094-3	chr4	148088016	148088216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	-52.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	58.15	65.9	56.48	69.18	54.82	79.65	37.2	65.22	90.48	94.9	75.37	45.74
Merged-chr5-143055762-3	chr5	143055645	143055845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	57275.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	80.76	72.69	100.4	68.78	46.64	71.49	47.5	60.11	69.63	71.3	71.86	54.51
Merged-chr7-16048343-3	chr7	16048283	16048483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23462.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	121.14	112.18	126.64	95.72	140.32	174.66	69.76	93.84	112.51	97.91	120.09	60.15
Merged-chr17-3314347-3	chr17	3314248	3314448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12225.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	34.32	24.65	20.54	39.82	43.36	31.98	40.86	53.1	41.3	45.69	54.27	27.88
Merged-chr16-91849070-3	chr16	91848992	91849192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	82538.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	92.07	110.67	119.23	167.72	104.73	169.33	120.58	119.52	130.8	153.14	203.0	112.78
Merged-chr12-116054572-3	chr12	116054477	116054677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	6853.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	35.94	30.94	79.29	71.99	155.05	102.22	160.77	193.29	153.22	120.0	192.95	113.72
Merged-chr11-87748867-3	chr11	87748782	87748982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7982.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	26.65	22.89	33.09	17.7	29.86	42.65	14.62	23.58	50.75	58.24	47.23	19.74
Merged-chr18-6241477-3	chr18	6241364	6241564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	60.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	49.26	56.85	49.06	69.98	69.14	71.18	74.74	64.63	38.94	42.68	81.4	34.46
Merged-chr4-53158861-3	chr4	53158761	53158961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1034.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	124.37	111.18	107.82	117.04	128.46	170.58	130.21	159.51	152.24	133.56	211.04	105.57
Merged-chr10-128058950-3	chr10	128058872	128059072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-10.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	82.37	91.05	81.0	67.97	88.78	109.12	72.75	77.61	135.71	136.57	98.99	83.33
Merged-chr1-179546315-3	chr1	179546169	179546369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146105)	promoter-TSS (NM_146105)	7.0	NM_001331054	15278.0	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	145.37	145.38	145.47	177.37	143.6	211.03	139.84	157.37	220.49	186.78	301.49	155.07
Merged-chr8-105827726-1	chr8	105827626	105827826	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-18.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	31.09	21.63	20.54	26.55	40.91	51.11	24.25	28.12	59.01	55.23	84.92	45.74
Merged-chr13-54688211-3	chr13	54688089	54688289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	11.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	104.58	87.53	90.13	108.19	130.91	170.27	78.06	107.13	164.43	170.21	203.0	109.96
Merged-chr5-139017904-3	chr5	139017807	139018007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22954.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	74.7	60.37	55.9	65.16	99.0	88.11	46.17	65.86	106.6	99.42	113.06	65.47
Merged-chr10-118611231-3	chr10	118611129	118611329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54704.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	25.84	14.34	43.35	31.77	19.23	24.46	34.55	27.06	23.01	28.12	52.76	27.88
Merged-chr17-79485458-1	chr17	79485358	79485558	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7573.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	1.21	0.25	1.14	0.8	0.41	4.08	8.97	4.49	82.61	86.86	99.49	69.23
Merged-chr16-4726364-3	chr16	4726210	4726410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136066)	promoter-TSS (NM_001136066)	-51.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	40.38	35.97	38.22	44.64	54.0	44.84	32.88	52.04	47.4	48.2	60.8	37.28
Merged-chr11-103436481-3	chr11	103436392	103436592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23828.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.65	14.09	19.97	3.62	25.36	31.04	13.29	14.38	25.18	29.12	29.14	11.59
Merged-chr6-8691433-3	chr6	8691341	8691541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	67017.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	50.07	36.72	78.15	68.37	66.27	68.05	35.21	95.16	100.51	70.29	128.13	59.21
Merged-chr19-41848266-3	chr19	41848169	41848369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177603)	promoter-TSS (NM_177603)	-137.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	46.44	55.34	55.9	52.69	30.68	77.45	62.45	33.03	45.04	62.76	59.8	47.62
Merged-chr19-55774992-3	chr19	55774902	55775102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	33192.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	46.84	28.42	50.2	41.02	40.09	38.57	32.22	51.06	40.32	43.68	39.19	23.81
Merged-chr15-103240918-3	chr15	103240820	103241020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039129, intron 1 of 10)	intron (NM_001039129, intron 1 of 10)	466.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	23.42	20.63	20.54	18.1	19.23	30.73	18.93	16.99	42.09	40.17	43.21	23.81
Merged-chr13-20140256-3	chr13	20140172	20140372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	49765.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	33.11	47.04	69.03	21.72	32.32	48.29	18.6	27.93	49.96	55.73	59.8	22.24
Merged-chr11-102230200-3	chr11	102230085	102230285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284250)	promoter-TSS (NM_001284250)	-13.0	NM_001284250	15184.0	Mm.22665	NM_010412	ENSMUSG00000008855	Hdac5	AI426555|Hdac4|mHDA1|mKIAA0600	histone deacetylase 5	protein-coding	57.74	55.59	54.19	46.25	63.41	54.88	30.56	38.61	77.3	80.34	48.24	58.58
Merged-chr10-41386054-3	chr10	41385951	41386151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-64307.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	28.27	36.97	57.62	51.08	42.55	46.41	41.85	43.26	37.76	46.7	68.84	41.35
Merged-chr8-124586825-2	chr8	124586724	124586924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023709, intron 1 of 19)	intron (NM_023709, intron 1 of 19)	10713.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	36.34	40.75	53.62	36.2	24.55	18.19	19.93	33.45	0.0	0.0	1.0	0.0
Merged-chr9-31280449-3	chr9	31280365	31280565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9064.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	104.99	78.48	102.68	94.52	100.23	122.61	83.71	122.94	145.35	162.68	202.5	96.17
Merged-chr17-26168191-3	chr17	26168103	26168303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159598, intron 2 of 9)	ORR1B1|LTR|ERVL-MaLR	29517.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	23.42	14.34	25.67	50.27	29.46	17.87	21.26	43.68	11.21	19.08	27.64	21.62
Merged-chr11-44470033-1	chr11	44469933	44470133	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024475, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	515.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	9.69	9.81	11.98	10.05	16.36	9.09	9.3	8.05	14.16	24.1	16.08	16.29
Merged-chr3-59120698-3	chr3	59120584	59120784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	MER20|DNA|hAT-Charlie	10078.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	21.0	15.59	23.39	19.71	15.14	24.77	15.61	24.17	22.42	18.58	34.67	14.72
Merged-chr17-67329615-3	chr17	67329509	67329709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24850.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	108.62	78.48	87.28	76.02	96.14	149.57	88.03	90.79	115.26	98.91	101.0	45.11
Merged-chr11-24185140-3	chr11	24185041	24185241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104446.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	27.86	29.18	38.22	57.51	40.5	58.01	35.54	46.35	21.64	28.62	33.67	17.23
Merged-chr12-105784574-3	chr12	105784476	105784676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347440)	promoter-TSS (NM_001347440)	-121.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	121.95	130.04	134.06	104.17	201.69	294.44	210.93	228.23	204.36	200.84	210.54	109.64
Merged-chr16-8667471-3	chr16	8667370	8667570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	4683.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	32.71	37.23	38.22	32.58	50.32	68.05	41.19	56.02	53.11	75.82	88.44	40.1
Merged-chr3-95043101-3	chr3	95043006	95043206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-492.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	35.53	31.69	43.93	27.35	54.0	40.45	22.92	42.06	51.34	45.19	41.71	36.03
Merged-chr14-120263596-3	chr14	120263498	120263698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12071.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	71.47	56.34	59.33	28.96	48.27	85.92	41.19	46.49	59.4	57.24	49.75	26.63
Merged-chr16-32595384-3	chr16	32595279	32595479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13517.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	50.88	37.73	49.06	53.09	38.05	55.19	28.9	45.2	55.47	53.22	50.25	32.89
Merged-chr13-113600854-3	chr13	113600761	113600961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17703.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	79.55	67.91	75.3	35.39	73.64	134.52	72.75	64.88	117.23	110.46	103.01	82.08
Merged-chr7-99151519-3	chr7	99151427	99151627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10383.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	23.02	39.24	47.35	31.77	31.91	42.96	22.26	31.35	49.96	38.66	46.73	15.35
Merged-chr7-19228203-3	chr7	19228113	19228313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-176.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	313.35	314.91	269.26	282.75	262.24	373.15	248.13	218.1	381.97	436.83	409.02	237.14
Merged-chr7-123371168-3	chr7	123371072	123371272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1257.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	76.32	48.29	114.66	74.41	86.73	97.52	91.35	107.27	92.25	78.33	114.57	69.23
Merged-chr11-21424512-3	chr11	21424405	21424605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17B2|LTR|ERVK	-53238.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	27.46	23.9	29.66	45.45	48.68	40.45	26.91	41.44	48.58	34.14	32.16	26.0
Merged-chr6-38938647-3	chr6	38938552	38938752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	19666.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	48.05	35.47	69.6	67.57	34.36	37.63	43.85	63.45	45.43	56.24	94.47	41.04
Merged-chr16-20672728-3	chr16	20672628	20672828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	1.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	111.45	95.33	87.85	89.69	131.32	147.69	86.36	99.17	136.89	145.61	133.66	67.04
Merged-chr18-23752285-3	chr18	23752160	23752360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	45.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	45.63	40.5	36.51	24.94	54.41	43.59	38.86	32.22	33.04	46.7	50.75	31.01
Merged-chr7-19822795-3	chr7	19822682	19822882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-27.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	69.05	69.92	56.48	32.58	45.82	91.25	46.84	47.1	82.22	69.79	68.84	24.43
Merged-chr10-128696429-3	chr10	128696330	128696530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-162.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	281.85	291.02	276.67	289.18	291.28	388.52	266.07	323.66	381.57	391.14	462.79	255.63
Merged-chr10-53928098-3	chr10	53928018	53928218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	147678.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	59.76	29.18	68.45	102.56	92.46	87.17	83.71	140.38	41.11	76.32	94.47	69.55
Merged-chrX-38600578-3	chrX	38600502	38600702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356360)	promoter-TSS (NM_001356360)	131.0	NM_001361381	68995.0	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	59.36	58.86	45.64	43.04	44.18	63.34	39.2	49.85	62.94	44.69	93.96	48.24
Merged-chr11-110993792-3	chr11	110993700	110993900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-3687.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	87.22	53.07	102.11	148.01	56.05	56.44	73.41	85.12	104.24	70.8	141.2	72.36
Merged-chr14-54756576-3	chr14	54756487	54756687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25299.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	46.44	49.55	63.32	55.5	42.55	64.91	54.81	74.75	101.1	68.29	133.16	73.3
Merged-chr9-83834572-3	chr9	83834450	83834650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009445)	promoter-TSS (NM_009445)	-139.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	86.01	98.85	54.76	87.68	105.14	140.79	106.63	102.81	131.98	129.04	183.91	64.85
Merged-chr6-31126531-3	chr6	31126410	31126610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-63417.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	127.6	83.0	194.53	146.4	130.5	165.57	177.05	170.75	197.08	157.66	311.54	137.52
Merged-chr16-57228830-3	chr16	57228736	57228936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 1 of 17)	MTC|LTR|ERVL-MaLR	2630.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	55.32	61.37	57.05	69.18	57.68	86.55	55.14	55.18	119.0	103.43	163.31	96.17
Merged-chr12-84761434-3	chr12	84761315	84761515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	MLTR14|LTR|ERV1	11697.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	89.64	70.68	79.29	56.71	113.32	141.42	69.42	54.84	108.57	123.02	80.9	42.29
Merged-chr7-105778611-3	chr7	105778491	105778691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	8959.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	27.86	15.09	24.53	30.16	38.46	25.71	21.26	37.26	28.13	24.1	20.6	20.68
Merged-chr18-83853977-3	chr18	83853886	83854086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	232576.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	37.15	28.42	38.22	53.89	47.87	56.44	41.52	62.22	51.34	45.19	64.82	32.58
Merged-chr7-116443503-3	chr7	116443419	116443619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-61.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	64.61	59.61	77.01	82.45	78.96	88.43	50.82	81.76	101.88	97.41	105.02	66.1
Merged-chr2-30693426-3	chr2	30693314	30693514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15403.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	24.23	21.38	44.5	28.56	38.46	39.51	23.25	33.17	45.24	44.19	46.23	37.91
Merged-chr5-36748666-3	chr5	36748571	36748771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133724)	promoter-TSS (NM_133724)	8.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	44.82	40.75	53.05	45.45	45.0	63.66	18.27	44.92	64.91	80.84	62.81	43.23
Merged-chr10-96274192-3	chr10	96274108	96274308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48001.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	16.96	18.86	33.09	34.19	29.05	38.88	23.25	36.17	25.57	20.59	27.13	16.6
Merged-chr6-114648800-3	chr6	114648712	114648912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	5715.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	24.23	18.36	39.93	18.9	46.64	27.91	34.21	34.4	37.76	23.6	43.21	24.75
Merged-chr7-45523970-3	chr7	45523879	45524079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	2289.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	25.44	12.07	19.97	5.23	24.55	19.76	22.92	21.42	34.42	21.59	42.21	24.75
Merged-chr14-55635772-3	chr14	55635677	55635877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024267)	promoter-TSS (NM_024267)	-93.0	NM_024267	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	109.02	88.79	90.7	96.53	101.87	111.63	49.49	100.51	103.26	103.43	116.07	72.36
Merged-chr8-125012963-3	chr8	125012843	125013043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016909)	promoter-TSS (NM_016909)	-54.0	NM_016909	53424.0	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	76.72	39.24	56.48	70.79	67.5	76.2	63.44	64.37	67.46	71.3	95.47	34.77
Merged-chr2-27308640-3	chr2	27308537	27308737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	MTE2a|LTR|ERVL-MaLR	-61334.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	35.53	25.91	40.5	69.98	42.55	32.93	25.58	65.55	30.29	22.09	51.76	23.18
Merged-chr16-8862466-3	chr16	8862359	8862559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32359.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	29.48	16.1	7.99	15.69	38.86	25.09	17.61	27.14	20.46	23.6	20.1	15.35
Merged-chr11-117781708-3	chr11	117781606	117781806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	-591.0	NM_001195090	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	37.55	32.45	46.78	29.76	54.82	51.11	37.2	57.87	54.88	36.65	54.27	41.04
Merged-chr10-51480209-1	chr10	51480109	51480309	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-403.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	10.9	4.53	10.84	8.85	24.14	21.01	7.97	15.73	24.78	17.57	16.58	15.98
Merged-chr16-42875583-3	chr16	42875488	42875688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-1.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	352.11	408.98	340.56	466.55	430.38	482.59	449.1	485.64	595.57	649.72	750.71	326.74
Merged-chr6-85434092-3	chr6	85433999	85434199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	2123.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	35.13	39.49	88.99	41.43	47.46	60.21	36.87	55.77	57.63	36.65	68.34	51.06
Merged-chr14-122376825-3	chr14	122376737	122376937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029556, intron 4 of 7)	intron (NM_029556, intron 4 of 7)	74278.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	19.79	13.83	34.8	34.59	26.59	26.97	23.58	41.58	35.6	32.13	54.77	27.88
Merged-chr1-38013322-3	chr1	38013203	38013403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	15293.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	46.84	23.9	58.19	60.33	36.82	40.45	34.88	51.65	53.3	22.59	57.28	37.28
Merged-chr1-52233325-3	chr1	52233213	52233413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113383)	promoter-TSS (NM_001113383)	-81.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	245.91	185.88	223.05	226.04	234.42	285.04	234.84	270.09	319.81	305.28	394.95	178.88
Merged-chr19-29368611-3	chr19	29368492	29368692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1154.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	30.69	33.7	24.53	6.84	40.5	59.27	18.27	19.99	62.55	42.68	38.69	11.59
Merged-chr15-100423107-3	chr15	100423009	100423209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356952)	promoter-TSS (NM_001356952)	-54.0	NM_008732	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	146.58	117.97	117.51	105.38	130.09	141.73	75.07	90.0	183.31	165.69	162.8	83.96
Merged-chr12-70227735-3	chr12	70227634	70227834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	-51.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	93.68	68.42	65.6	92.51	106.78	112.57	81.38	127.09	110.74	81.84	135.67	64.85
Merged-chr1-156674885-3	chr1	156674787	156674987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-548.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	82.78	71.18	72.45	55.91	50.73	80.9	58.46	62.72	59.4	68.79	62.81	42.6
Merged-chr2-92059643-3	chr2	92059548	92059748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35478.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	38.36	25.15	19.4	31.37	32.73	42.33	28.9	16.18	32.65	30.13	41.2	11.59
Merged-chr19-11336166-3	chr19	11336108	11336308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025610)	promoter-TSS (NM_001025610)	-62.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	36.34	32.45	41.64	27.35	55.23	42.33	29.56	27.28	35.6	55.73	44.22	28.19
Merged-chr12-119372548-3	chr12	119372454	119372654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70856.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	46.84	30.69	34.23	32.98	43.77	55.5	53.15	55.96	54.48	66.28	59.29	23.49
Merged-chr4-148448460-3	chr4	148448345	148448545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-137.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	149.0	161.73	157.45	182.2	177.55	204.45	132.54	159.81	208.29	206.87	222.6	125.62
Merged-chr12-51865968-3	chr12	51865867	51866067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36431.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	159.1	84.51	98.12	148.41	164.05	151.46	142.17	217.01	104.05	113.98	129.14	75.5
Merged-chr13-48965784-3	chr13	48965694	48965894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	2034.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	29.88	24.9	30.23	29.76	41.73	25.09	38.53	44.8	43.86	45.69	48.74	27.57
Merged-chr4-154964273-4	chr4	154964211	154964411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172990, intron 1 of 18)	CpG	188.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	14.94	16.1	21.11	21.32	18.0	16.62	24.25	14.94	15.93	24.6	26.13	17.86
Merged-chr5-134099699-3	chr5	134099606	134099806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-42.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	51.69	35.72	49.63	36.2	67.5	78.39	56.47	53.24	59.99	58.75	97.48	44.48
Merged-chr5-65247477-3	chr5	65247382	65247582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153391, exon 28 of 37)	exon (NM_153391, exon 28 of 37)	47786.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	25.84	40.75	37.08	32.98	46.64	49.23	28.9	30.79	54.88	70.8	22.61	21.62
Merged-chr18-23749803-3	chr18	23749698	23749898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126066)	TTS (NR_126066)	2507.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	48.46	43.77	38.22	46.25	57.27	49.86	28.9	56.61	62.94	58.24	66.83	38.53
Merged-chr17-40880438-3	chr17	40880340	40880540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027834, exon 1 of 2)	exon (NM_027834, exon 1 of 2)	118.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	29.88	27.17	38.22	34.19	21.27	17.87	31.56	21.62	29.7	29.62	41.71	26.63
Merged-chr7-46830924-3	chr7	46830827	46831027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14877.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	60.17	53.32	43.93	76.42	57.68	62.4	68.1	93.28	83.0	68.29	87.93	56.7
Merged-chr6-39278531-3	chr6	39278422	39278622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71749.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	40.38	26.66	38.22	28.56	73.23	67.73	82.05	89.13	27.34	35.15	55.27	19.42
Merged-chr7-110313585-3	chr7	110313479	110313679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 37 of 40)	intron (NM_177324, intron 37 of 40)	91876.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	121.54	105.14	150.03	194.26	117.0	111.63	138.52	144.87	105.03	88.87	123.61	77.38
Merged-chrX-167329803-3	chrX	167329707	167329907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	764.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	16.96	13.83	19.4	5.63	22.91	28.54	13.62	20.36	30.88	29.12	37.18	19.42
Merged-chr17-26605797-3	chr17	26605702	26605902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	44290.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	57.34	48.8	54.19	62.74	91.64	95.33	76.4	109.21	88.31	75.32	72.86	64.53
Merged-chr17-29498262-3	chr17	29498168	29498368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7223.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	60.57	63.64	70.74	70.79	53.59	60.83	33.55	38.89	59.01	59.75	61.3	28.51
Merged-chr1-171851724-3	chr1	171851633	171851833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	12036.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	19.38	14.09	27.38	38.61	41.73	40.76	21.26	33.5	31.86	49.21	56.78	33.21
Merged-chr7-17027746-3	chr7	17027654	17027854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011155, exon 1 of 13)	exon (NM_011155, exon 1 of 13)	160.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	49.67	59.86	62.18	67.17	48.68	76.83	69.09	47.66	50.16	74.31	70.35	49.18
Merged-chr17-47737031-3	chr17	47736932	47737132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-5.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	65.01	52.07	59.9	57.51	66.27	63.03	37.54	47.92	77.89	70.8	98.99	46.36
Merged-chr10-99270594-3	chr10	99270502	99270702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7371.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	72.68	54.58	95.27	81.24	86.73	106.61	92.01	140.36	96.97	113.48	122.61	65.47
Merged-chr14-66873539-3	chr14	66873409	66873609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4659.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	26.25	14.34	16.54	18.5	19.64	22.26	21.92	12.56	31.27	28.62	28.64	17.86
Merged-chr18-54970989-3	chr18	54970901	54971101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	19179.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	81.97	88.03	92.98	104.17	105.55	113.83	72.41	96.98	100.7	122.01	128.64	75.81
Merged-chr12-79136038-3	chr12	79135943	79136143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	5255.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	38.76	19.87	36.51	21.32	85.91	69.3	79.72	102.51	58.42	57.24	58.79	27.88
Merged-chr10-58399586-3	chr10	58399491	58399691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	5218.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	31.5	24.4	41.07	62.74	35.18	38.26	39.53	50.55	37.17	36.65	63.82	25.69
Merged-chr8-19703339-1	chr8	19703239	19703439	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26237.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	4.44	11.32	4.56	2.41	3.27	2.51	12.95	2.3	3.15	6.03	4.02	4.7
Merged-chr15-57892537-3	chr15	57892447	57892647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-129.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	266.51	260.58	258.42	239.31	299.87	328.31	280.68	296.83	295.82	315.82	398.97	172.3
Merged-chr16-93711161-3	chr16	93711074	93711274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-733.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	35.94	32.7	22.82	48.26	37.23	34.49	29.56	19.46	47.21	55.73	42.71	28.51
Merged-chr19-53314321-3	chr19	53314242	53314442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	CpG	2897.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	131.23	146.39	190.53	192.25	172.23	167.45	136.52	188.16	208.1	200.84	270.84	153.19
Merged-chr10-111721216-3	chr10	111721130	111721330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126957.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	24.23	16.6	32.52	47.06	49.5	30.73	51.82	62.27	33.83	31.63	83.41	44.17
Merged-chr16-55504941-3	chr16	55504857	55505057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10226.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	67.03	38.99	49.63	56.71	69.55	78.08	40.86	78.28	92.25	109.96	79.39	50.12
Merged-chr13-112440149-3	chr13	112440041	112440241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23929.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	28.67	14.09	28.52	30.16	59.73	42.65	50.82	76.82	37.76	38.66	48.74	24.75
Merged-chr10-80677970-3	chr10	80677864	80678064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1671.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	60.17	46.78	53.62	46.66	77.73	59.89	53.81	56.78	82.61	73.81	90.45	55.13
Merged-chr1-107481643-3	chr1	107481539	107481739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29784.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	25.04	26.41	27.38	24.13	32.32	42.65	23.25	31.18	34.62	24.6	38.69	26.31
Merged-chr10-95357242-1	chr10	95357142	95357342	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20966.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	7.27	2.52	11.98	2.41	0.0	3.76	2.99	4.99	21.05	6.53	21.1	16.29
Merged-chr12-3235798-2	chr12	3235692	3235892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	1.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	68.65	72.44	39.36	51.48	77.73	62.4	41.19	45.11	74.54	98.91	85.42	38.53
Merged-chr18-39137596-3	chr18	39137489	39137689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144444.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	21.4	23.39	25.67	19.31	21.68	25.4	15.61	30.62	27.14	27.62	31.15	18.8
Merged-chr11-20930815-3	chr11	20930712	20930912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99704.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	39.57	39.74	51.91	50.27	67.09	52.68	41.19	61.65	57.63	66.28	60.3	35.71
Merged-chr6-122854746-3	chr6	122854631	122854831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	1426.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	52.9	42.51	28.52	49.87	37.23	54.25	45.84	41.92	62.74	60.75	54.77	36.03
Merged-chr11-68853151-3	chr11	68853037	68853237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-6.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	155.06	116.96	136.34	133.53	191.05	237.06	119.91	117.45	204.95	205.36	206.52	110.58
Merged-chr3-130709709-3	chr3	130709605	130709805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-261.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	30.28	36.47	25.67	34.99	47.05	55.19	28.23	37.04	58.81	49.21	81.9	50.12
Merged-chr6-83502849-3	chr6	83502768	83502968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4101.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	33.11	28.93	50.2	34.99	27.0	28.22	23.58	36.45	29.11	46.7	48.74	37.59
Merged-chr18-60774536-3	chr18	60774464	60774664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020600)	promoter-TSS (NM_020600)	-32.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	79.55	79.73	77.58	63.95	82.23	107.24	63.44	67.26	75.92	95.9	111.05	55.45
Merged-chr6-29768325-3	chr6	29768214	29768414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-129.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	184.53	153.43	200.23	141.57	176.32	248.98	130.21	164.08	195.11	153.14	248.73	136.58
Merged-chr17-84188655-3	chr17	84188556	84188756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-709.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	205.53	181.1	276.1	219.6	207.82	193.16	179.37	224.33	209.47	213.39	253.25	173.24
Merged-chr11-114927355-3	chr11	114927247	114927447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7039.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	45.23	32.95	25.1	43.84	24.96	50.8	28.23	29.05	44.65	13.56	37.18	23.81
Merged-chr11-97150133-3	chr11	97150038	97150238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-426.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	21.0	25.91	25.67	14.88	33.14	25.4	15.94	21.64	39.34	30.13	27.64	21.62
Merged-chr5-137631779-1	chr5	137631679	137631879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2656.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	12.11	11.57	3.42	1.61	4.91	14.74	5.65	3.39	6.88	5.52	4.52	7.52
Merged-chr6-97486189-3	chr6	97486081	97486281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1639.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	44.01	34.21	52.48	60.33	56.05	66.16	78.39	70.57	70.61	73.81	99.99	68.92
Merged-chr4-3627174-2	chr4	3627070	3627270	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-29336.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	39.17	42.51	47.35	43.44	57.68	82.16	62.78	55.54	56.65	89.88	120.6	45.74
Merged-chr6-81446288-3	chr6	81446193	81446393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	449370.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	48.05	52.82	57.05	49.87	31.5	80.9	51.82	46.57	73.76	58.75	82.41	40.1
Merged-chr16-33954916-3	chr16	33954813	33955013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	12125.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	37.15	30.18	28.52	37.0	27.0	37.63	37.2	39.2	46.22	30.13	45.22	20.68
Merged-chr16-3872368-3	chr16	3872265	3872465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033159)	promoter-TSS (NM_001033159)	9.0	NM_001033159	71063.0	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	52.9	49.8	64.46	80.04	28.64	26.65	17.61	31.18	29.5	18.58	50.75	13.47
Merged-chr13-89378570-1	chr13	89378470	89378670	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-162066.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.04	4.53	3.42	8.45	4.09	3.76	2.33	6.28	40.91	29.12	34.17	25.37
Merged-chr3-106788145-3	chr3	106788061	106788261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1988.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	31.09	36.47	40.5	37.4	34.36	38.88	24.58	46.26	49.96	38.16	81.9	41.04
Merged-chr6-17764498-3	chr6	17764396	17764596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	15326.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	52.09	77.97	69.03	59.93	64.64	96.89	47.17	62.75	83.99	88.37	86.93	38.22
Merged-chr3-88178190-3	chr3	88178085	88178285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-400.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	144.56	165.76	130.63	153.64	196.37	211.35	155.12	167.16	201.61	193.81	243.2	136.58
Merged-chr5-112326286-3	chr5	112326165	112326365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-104.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	83.99	75.96	71.31	71.99	99.41	101.28	72.75	71.41	104.05	100.92	113.56	47.3
Merged-chr11-6200205-3	chr11	6200094	6200294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173748, exon 1 of 6)	5' UTR (NM_173748, exon 1 of 6)	257.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	30.69	20.37	24.53	14.08	31.91	40.45	16.28	31.32	46.62	47.2	43.72	48.24
Merged-chr16-44746320-3	chr16	44746200	44746400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356392)	promoter-TSS (NM_001356392)	63.0	NM_001356392	66067.0	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	23.82	20.63	22.82	30.16	26.18	40.14	28.57	27.84	33.04	36.65	48.74	20.68
Merged-chr4-139252146-3	chr4	139252058	139252258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58047.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	22.61	12.58	29.66	17.29	20.86	23.52	11.29	19.07	35.6	15.06	22.11	19.11
Merged-chr12-111672321-3	chr12	111672221	111672421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021273)	promoter-TSS (NM_021273)	17.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	33.11	31.94	28.52	27.75	32.73	35.43	18.6	21.59	32.26	48.7	47.23	37.28
Merged-chr18-61105780-3	chr18	61105703	61105903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001037859, exon 2 of 22)	5' UTR (NM_001037859, exon 2 of 22)	231.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	62.59	60.12	58.19	39.82	81.82	111.0	63.44	48.48	89.49	69.79	81.9	49.5
Merged-chr6-126910918-3	chr6	126910819	126911019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	10920.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	20.19	45.53	39.93	45.85	26.18	32.93	20.93	35.05	43.47	30.63	49.75	30.07
Merged-chr7-66388308-3	chr7	66388225	66388425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	16.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	27.46	18.61	30.23	18.5	31.5	31.98	16.94	26.55	47.01	43.68	54.77	29.76
Merged-chr6-125481902-3	chr6	125481748	125481948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12912.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	22.61	35.97	31.38	23.33	25.77	46.1	28.9	29.13	49.96	56.24	39.19	40.1
Merged-chr18-32407478-3	chr18	32407325	32407525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29141.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	78.34	75.46	115.23	141.17	103.91	86.23	105.3	129.28	121.55	121.51	187.93	102.75
Merged-chr1-74387007-3	chr1	74386900	74387100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013612)	TTS (NM_013612)	-4609.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	90.05	77.22	88.42	66.77	103.5	127.94	87.69	88.35	163.64	176.24	176.87	94.61
Merged-chrX-12089794-3	chrX	12089686	12089886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-9233.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	30.69	20.12	32.52	22.93	39.27	34.18	24.91	28.99	29.9	22.09	32.16	15.98
Merged-chr2-165321003-3	chr2	165320914	165321114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-188.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	39.57	27.92	45.07	39.01	51.96	34.18	30.56	54.28	54.88	40.17	53.77	53.88
Merged-chr10-128626856-3	chr10	128626803	128627003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-397.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	62.99	48.8	67.31	52.29	69.14	80.9	35.87	57.56	77.3	72.81	95.97	37.91
Merged-chr8-3500478-3	chr8	3500376	3500576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-43.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	75.11	88.54	73.59	80.04	76.5	112.89	66.1	76.54	103.26	106.95	102.51	64.53
Merged-chr17-17234789-3	chr17	17234624	17234824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362181)	promoter-TSS (NM_001362181)	-179.0	NM_001362181	102640673.0		NM_001362181		LOC102640673	-	zinc finger protein 431-like	protein-coding	103.37	91.05	115.8	123.88	135.41	118.22	93.67	91.71	172.3	133.06	224.61	105.26
Merged-chr13-28600999-3	chr13	28600893	28601093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	109880.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	48.46	38.23	92.98	90.49	66.27	54.56	93.01	78.36	76.91	63.27	119.59	62.97
Merged-chr3-87885747-3	chr3	87885647	87885847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-185.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	216.84	208.77	220.77	197.48	252.83	294.76	195.98	195.31	227.96	207.87	255.26	159.45
Merged-chr2-170002772-3	chr2	170002683	170002883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	YREP_Mm|Unknown|Unknown	-39596.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	23.42	16.35	47.35	45.45	31.5	21.64	30.56	48.2	48.39	48.7	42.21	43.86
Merged-chr16-58498593-3	chr16	58498488	58498688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24838.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	178.48	177.83	263.55	234.48	246.28	274.69	221.23	248.94	268.28	289.21	378.37	225.24
Merged-chr12-35066731-3	chr12	35066627	35066827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	Lx8|LINE|L1	19538.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	29.48	17.61	17.68	28.15	43.36	36.69	32.88	53.92	22.03	38.16	43.21	22.24
Merged-chr5-107437865-3	chr5	107437788	107437988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-109.0	NM_001255991	100503185.0	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	77.12	59.11	59.33	60.33	70.77	64.6	43.85	57.84	67.07	61.26	94.47	57.33
Merged-chr3-32529450-3	chr3	32529350	32529550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-32.0	NM_024200	67414.0	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	88.43	82.75	83.29	57.51	127.23	118.22	104.97	138.62	124.7	136.07	181.4	91.47
Merged-chrX-20662840-3	chrX	20662741	20662941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136085)	promoter-TSS (NM_001136085)	-55.0	NM_001136085	22201.0	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	26.25	32.95	17.68	32.18	31.91	52.99	26.91	41.75	42.48	62.76	68.34	28.82
Merged-chr14-103346858-3	chr14	103346763	103346963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-63.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	98.12	107.91	112.38	101.35	123.96	96.58	77.73	134.05	121.55	138.58	193.96	85.21
Merged-chr8-70805074-3	chr8	70804979	70805179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3370.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	49.67	38.99	66.17	19.71	46.23	57.7	27.9	41.58	74.94	71.3	94.47	29.13
Merged-chr2-158624887-3	chr2	158624793	158624993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175419)	promoter-TSS (NM_175419)	-20.0	NM_175419	109275.0	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	52.49	35.21	44.5	46.25	60.96	63.66	23.92	59.94	55.27	57.24	103.01	49.5
Merged-chr9-77910146-3	chr9	77910050	77910250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7215.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	46.44	40.24	21.11	9.65	68.73	89.05	45.84	27.14	57.63	40.17	40.7	23.49
Merged-chr12-40585776-3	chr12	40585706	40585906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139753.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	16.56	25.15	15.97	10.46	24.96	26.03	21.92	17.47	27.14	38.66	39.7	25.37
Merged-chr4-55665016-3	chr4	55664928	55665128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132553.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	56.94	49.55	55.9	70.38	68.73	59.58	53.15	107.36	66.09	48.7	52.76	57.95
Merged-chr9-45247807-3	chr9	45247705	45247905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18902.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	71.47	71.69	101.54	84.86	103.91	121.35	72.75	91.54	107.79	102.43	114.06	61.71
Merged-chr4-133241558-4	chr4	133241484	133241684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016693, intron 1 of 28)	intron (NM_016693, intron 1 of 28)	766.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	23.42	13.83	13.69	19.71	16.36	18.5	12.29	10.15	26.75	33.14	22.11	29.76
Merged-chr8-126587004-3	chr8	126586917	126587117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6419.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	29.48	14.59	27.38	16.49	37.23	38.57	18.27	24.9	36.58	28.62	20.6	21.62
Merged-chr2-36278955-3	chr2	36278882	36279082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44C|DNA|TcMar-Tigger	48556.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	38.76	30.69	42.21	51.08	48.68	60.21	47.17	51.2	95.39	80.34	93.46	37.91
Merged-chr15-9071775-1	chr15	9071675	9071875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040395, intron 1 of 12)	CpG	515.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	20.19	14.84	28.52	19.71	16.36	15.37	17.94	22.32	21.44	12.05	20.1	14.72
Merged-chr6-121227010-3	chr6	121226903	121227103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017379)	TTS (NM_017379)	16269.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	58.15	88.79	86.71	76.02	73.23	60.21	46.84	80.89	101.29	76.82	105.02	61.09
Merged-chr14-18238488-3	chr14	18238395	18238595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	CpG	611.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	194.23	229.9	217.34	264.65	254.05	257.13	246.14	244.23	314.7	324.86	404.0	182.63
Merged-chr6-86471939-1	chr6	86471839	86472039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8891.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	19.38	13.33	21.11	9.65	30.27	28.54	13.29	18.81	33.24	31.13	29.14	29.45
Merged-chr18-46612370-3	chr18	46612260	46612460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14656.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	61.38	53.07	46.78	67.57	68.73	89.68	44.84	86.19	72.77	51.72	53.77	38.53
Merged-chr15-88142187-1	chr15	88142087	88142287	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-172687.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	8.08	4.02	1.14	13.67	27.41	19.13	24.25	41.66	0.0	0.5	0.0	0.63
Merged-chr3-152714097-3	chr3	152714012	152714212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178016)	promoter-TSS (NM_178016)	12.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	68.65	85.52	57.05	89.69	83.87	95.33	51.82	93.2	124.31	96.4	143.21	105.26
Merged-chr11-51264650-3	chr11	51264550	51264750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-988.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	33.52	18.11	27.38	20.51	31.5	28.85	14.28	27.62	50.55	43.18	36.18	26.0
Merged-chr2-181837886-3	chr2	181837779	181837979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153594)	promoter-TSS (NM_153594)	25.0	NM_001291211	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	29.48	16.1	27.95	17.29	26.18	30.42	20.59	29.36	28.32	22.59	34.67	22.87
Merged-chr19-43940182-3	chr19	43940077	43940277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028029)	promoter-TSS (NM_028029)	21.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	53.3	36.97	55.9	36.2	51.96	46.1	40.86	36.25	50.16	43.68	80.9	31.95
Merged-chr17-37538588-3	chr17	37538489	37538689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8632.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	44.01	48.04	122.65	129.91	70.37	41.39	79.72	67.01	73.17	71.8	95.47	48.87
Merged-chr8-72350211-3	chr8	72350115	72350315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31153.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	22.61	15.34	47.35	36.2	34.36	27.59	28.9	49.88	29.31	27.11	44.22	23.81
Merged-chr13-55020287-3	chr13	55020177	55020377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	542.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	67.43	57.6	71.31	65.96	75.28	55.5	60.12	78.22	84.77	84.86	79.89	55.45
Merged-chr6-127236773-3	chr6	127236682	127236882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71185.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	134.87	121.99	142.61	174.55	131.32	173.72	138.85	123.84	146.93	158.16	188.93	67.04
Merged-chr17-50509557-3	chr17	50509465	50509665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	18.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	35.53	22.89	25.1	32.58	43.36	43.59	24.58	20.94	39.73	42.18	28.64	24.75
Merged-chr3-41083199-3	chr3	41083116	41083316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-170.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	209.97	261.09	207.08	233.28	299.05	308.56	258.43	263.1	388.07	452.4	563.28	243.09
Merged-chr8-14891469-3	chr8	14891378	14891578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	2942.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	92.87	83.76	109.53	140.37	117.0	123.55	152.47	168.67	108.77	116.49	178.38	97.43
Merged-chr6-127254159-3	chr6	127254057	127254257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53810.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	128.81	103.63	152.31	117.84	110.87	115.39	86.36	127.26	113.69	102.43	143.71	74.56
Merged-chr19-53142610-3	chr19	53142524	53142724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277100)	promoter-TSS (NM_001277100)	-132.0	NM_001277100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	295.98	273.66	378.21	331.01	392.33	439.0	265.4	409.63	402.82	422.27	544.19	213.33
Merged-chr16-37011707-3	chr16	37011597	37011797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159369)	promoter-TSS (NM_001159369)	-89.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	51.69	40.24	30.8	43.84	44.59	63.34	25.24	39.73	55.27	58.75	71.86	35.4
Merged-chr5-143817717-3	chr5	143817618	143817818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-54144.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	120.33	90.55	93.55	71.19	121.5	107.87	61.12	93.11	104.83	101.93	125.12	74.24
Merged-chr9-77754658-3	chr9	77754605	77754805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151778, exon 1 of 17)	non-coding (NR_151778, exon 1 of 17)	170.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	69.05	115.45	54.76	62.74	75.28	97.52	92.68	69.48	107.39	123.02	96.98	40.72
Merged-chr15-58261760-3	chr15	58261667	58261867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-46875.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	85.2	82.5	94.13	100.95	144.0	111.63	102.64	114.81	137.29	113.48	120.09	75.81
Merged-chr12-40446751-3	chr12	40446717	40446917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	764.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	18.17	24.15	20.54	21.72	11.86	19.13	14.95	15.87	21.24	14.56	17.08	12.22
Merged-chr14-31830777-3	chr14	31830692	31830892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-377.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	62.59	40.24	51.34	33.38	61.77	55.19	52.15	74.78	84.18	74.81	106.02	33.52
Merged-chr7-118491518-3	chr7	118491398	118491598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033380, exon 1 of 1)	5' UTR (NM_001033380, exon 1 of 1)	477.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	21.4	32.45	48.49	32.98	40.91	45.15	29.23	46.6	39.73	45.19	50.25	34.46
Merged-chr16-98082053-3	chr16	98081964	98082164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	375.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	19.38	13.33	24.53	21.72	39.68	35.12	27.24	43.37	40.12	46.19	58.29	39.78
Merged-chr12-25378285-2	chr12	25378199	25378399	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	249125.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	7.67	4.28	8.56	12.07	1.64	8.47	4.98	10.82	22.23	25.61	38.69	30.07
Merged-chr10-7663329-3	chr10	7663227	7663427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-44.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	51.28	46.03	31.38	34.59	80.59	71.49	70.75	62.19	78.87	62.76	102.0	54.2
Merged-chr17-78362527-3	chr17	78362433	78362633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	55619.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	51.28	56.09	75.87	69.98	65.87	49.23	65.11	84.87	65.1	55.73	71.86	37.28
Merged-chr14-8224088-3	chr14	8223997	8224197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027782)	TTS (NM_027782)	7849.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	18.17	32.45	28.52	51.08	36.0	53.93	46.17	86.47	72.18	47.7	42.71	38.53
Merged-chr6-125256730-3	chr6	125256636	125256836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8789.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	15.75	13.33	23.96	13.27	25.77	18.19	18.6	28.26	59.4	37.16	52.26	25.69
Merged-chr2-59889901-3	chr2	59889815	59890015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A3|LTR|ERVK	-7309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	16.15	13.58	23.96	22.93	19.23	22.58	13.62	29.19	22.82	22.09	28.64	16.6
Merged-chr14-40985840-3	chr14	40985737	40985937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-18941.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	60.97	61.37	73.02	57.92	54.41	72.75	50.49	73.74	68.84	62.76	54.27	36.97
Merged-chr13-85359355-3	chr13	85359262	85359462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69876.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	35.53	37.48	39.93	53.09	61.77	35.12	31.22	63.79	57.63	71.3	80.4	47.3
Merged-chr9-104408071-3	chr9	104407969	104408169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18044.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	67.84	71.18	65.6	44.24	55.23	81.84	63.78	65.36	111.13	89.88	143.71	69.86
Merged-chr11-32358601-3	chr11	32358510	32358710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177364, intron 1 of 12)	MIR|SINE|MIR	10799.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	67.03	56.09	54.76	60.33	27.82	19.13	12.95	20.22	42.48	40.67	61.3	28.19
Merged-chr11-114679795-3	chr11	114679704	114679904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	4336.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	70.66	55.84	57.62	62.34	59.32	85.29	47.5	57.48	87.92	61.26	104.52	51.38
Merged-chr7-64141516-3	chr7	64141460	64141660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12275.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	62.59	60.12	90.13	47.06	72.41	83.1	74.41	64.18	100.9	95.4	83.41	68.29
Merged-chr17-35000969-3	chr17	35000870	35001070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011690)	promoter-TSS (NM_011690)	63.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	42.8	27.42	24.53	50.27	34.36	47.98	47.83	29.33	47.8	55.73	62.81	38.53
Merged-chr11-84829118-3	chr11	84829017	84829217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	-61.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	124.77	118.22	184.26	106.58	161.6	146.44	117.59	143.24	142.21	134.06	171.85	104.32
Merged-chr3-94588180-3	chr3	94588077	94588277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5461.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	62.99	62.63	63.89	61.54	123.96	123.23	141.84	127.96	95.2	124.02	109.54	48.24
Merged-chr12-81781281-3	chr12	81781167	81781367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-97.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	92.07	71.43	107.82	91.7	114.55	142.99	75.73	115.91	177.81	138.58	197.48	87.09
Merged-chrX-102113327-3	chrX	102113219	102113419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6146.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	21.0	31.94	53.62	38.21	44.59	49.86	54.81	49.74	57.63	50.21	54.27	41.04
Merged-chr17-35998296-3	chr17	35998199	35998399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	3795.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	29.88	32.45	26.81	24.94	29.86	22.89	16.94	19.07	34.42	23.1	35.68	17.54
Merged-chr13-5511986-3	chr13	5511899	5512099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	346093.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	22.21	20.12	28.52	19.31	43.36	33.87	24.25	43.18	33.04	44.69	49.24	17.86
Merged-chr12-105962828-3	chr12	105962738	105962938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-47425.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	26.65	17.86	17.11	22.12	29.05	20.38	15.61	24.62	46.03	29.12	52.26	41.35
Merged-chr1-62721543-3	chr1	62721453	62721653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	18236.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	28.67	28.17	30.23	34.59	43.36	38.88	16.28	40.09	41.3	28.62	38.19	20.68
Merged-chr5-115535117-3	chr5	115535046	115535246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-24321.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	18.17	19.87	26.24	24.53	49.5	45.47	34.88	54.7	63.53	28.62	46.73	48.87
Merged-chr17-23771670-3	chr17	23771563	23771763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153791)	promoter-TSS (NM_153791)	-61.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	96.91	68.92	73.59	84.46	96.96	109.75	53.81	75.2	111.92	115.48	136.17	65.16
Merged-chr17-64721288-3	chr17	64721175	64721375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-45836.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	72.68	46.53	103.25	90.9	137.87	108.81	143.17	159.48	95.79	103.94	156.77	75.18
Merged-chr19-60226657-3	chr19	60226548	60226748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358271)	promoter-TSS (NM_001358271)	53.0	NR_152391	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	87.62	99.86	85.0	98.14	95.32	97.83	74.41	106.43	83.2	79.33	97.98	47.93
Merged-chr12-52603884-3	chr12	52603778	52603978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	-1556.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	31.9	40.75	45.64	41.43	30.27	36.37	38.86	17.66	53.3	69.79	60.3	49.81
Merged-chr7-48788514-3	chr7	48788426	48788626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-477.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	56.13	40.75	49.06	43.04	66.68	62.09	37.87	77.94	71.79	56.74	69.85	49.81
Merged-chr16-50409569-3	chr16	50409465	50409665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	22824.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	21.0	12.07	26.24	34.99	22.09	26.97	28.57	37.74	43.66	34.65	49.75	24.75
Merged-chr9-118611346-3	chr9	118611238	118611438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4629.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	49.26	29.18	59.9	49.47	51.14	43.9	57.8	71.89	60.19	42.18	117.08	47.62
Merged-chr11-62458449-3	chr11	62458335	62458535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039536)	promoter-TSS (NM_001039536)	-25.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	34.73	23.14	21.11	27.35	27.82	38.57	28.9	21.08	41.5	29.12	38.19	28.51
Merged-chr4-13152353-2	chr4	13152253	13152453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	245516.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	15.34	11.57	27.38	25.34	29.86	16.62	33.88	52.49	5.31	6.53	11.05	4.07
Merged-chr17-48043719-3	chr17	48043637	48043837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-5444.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	25.44	39.74	54.19	55.1	39.68	44.21	42.19	37.12	23.21	21.09	29.14	20.99
Merged-chr4-9647184-1	chr4	9647084	9647284	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3467.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.25	2.77	7.99	8.04	7.36	14.74	10.3	17.69	14.36	11.05	24.62	8.77
Merged-chr15-73645774-3	chr15	73645687	73645887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21043.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	117.5	93.57	106.1	90.9	96.14	120.73	62.12	81.7	115.06	96.91	165.32	70.17
Merged-chrX-13280563-2	chrX	13280426	13280626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010028)	promoter-TSS (NM_010028)	-496.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	23.02	13.33	20.54	18.5	20.86	28.54	27.57	17.19	30.49	28.12	23.11	14.41
Merged-chr7-102266753-3	chr7	102266657	102266857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1067.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	14.54	14.34	16.54	16.89	29.05	26.65	15.61	21.9	26.55	25.11	32.16	19.42
Merged-chr13-73433780-3	chr13	73433689	73433889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33594.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	37.55	48.29	59.33	41.43	64.23	41.39	30.89	59.58	75.92	69.29	74.87	46.05
Merged-chr4-148151996-3	chr4	148151895	148152095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015797)	promoter-TSS (NM_015797)	34.0	NM_001163706	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	165.56	167.52	178.55	185.82	187.37	213.86	149.14	193.32	214.19	226.45	293.95	108.08
Merged-chr2-3512934-3	chr2	3512851	3513051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	-114.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	336.77	302.09	315.46	343.88	340.37	439.94	251.12	330.48	366.43	426.79	468.82	224.61
Merged-chr2-114654796-3	chr2	114654696	114654896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025675, intron 1 of 8)	CpG	168.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	86.41	80.74	75.3	121.46	85.91	111.95	148.15	131.19	75.72	101.43	124.11	77.69
Merged-chr17-7884957-3	chr17	7884875	7885075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	40.78	16.85	37.65	26.95	29.86	43.9	30.56	43.37	33.04	32.64	33.16	29.45
Merged-chr10-67598771-3	chr10	67598657	67598857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26798.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	167.98	136.58	149.46	180.19	170.19	193.79	160.44	178.85	217.73	183.77	277.87	151.62
Merged-chr2-113440846-3	chr2	113440732	113440932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285459)	promoter-TSS (NM_001285459)	-232.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	58.15	44.02	53.62	63.55	92.46	72.44	52.15	88.21	110.15	101.43	127.13	81.45
Merged-chr15-75929825-3	chr15	75929733	75929933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-15.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	25.44	19.87	20.54	26.55	32.32	26.65	19.93	37.71	37.57	50.71	50.25	37.59
Merged-chr5-45497720-3	chr5	45497633	45497833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4359.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	14.54	21.63	35.94	25.74	26.18	19.76	42.85	41.55	28.13	23.6	31.15	15.35
Merged-chr2-118926532-3	chr2	118926455	118926655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	58.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	15.34	15.59	33.09	18.1	28.23	21.95	16.61	28.49	22.82	14.06	27.13	17.86
Merged-chr15-99074932-3	chr15	99074823	99075023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	-50.0	NM_001162506	78733.0	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	112.66	106.14	120.94	101.76	105.96	161.18	79.06	102.93	131.39	147.62	160.29	81.76
Merged-chr5-135568857-3	chr5	135568729	135568929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	4220.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	26.25	17.86	15.97	25.74	51.14	40.76	39.2	41.16	43.27	26.11	43.21	21.3
Merged-chr9-121371717-3	chr9	121371616	121371816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357973, intron 1 of 5)	(CTGGGG)n|Simple_repeat|Simple_repeat	4758.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	63.8	33.96	57.62	25.74	69.55	49.23	47.5	38.02	63.53	55.73	71.35	41.98
Merged-chr1-65112662-1	chr1	65112562	65112762	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9299.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	6.06	9.31	7.99	17.7	9.82	16.93	10.3	10.85	22.82	19.58	22.61	19.74
Merged-chr1-53876172-3	chr1	53876090	53876290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	26766.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	34.73	25.15	49.06	39.01	39.27	38.26	60.79	46.54	36.58	46.7	31.66	22.56
Merged-chr7-31150689-1	chr7	31150589	31150789	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153431, intron 1 of 18)	CpG	482.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	14.94	20.88	10.84	6.44	23.73	35.43	9.97	13.04	24.78	22.09	15.07	6.89
Merged-chr6-128799669-3	chr6	128799583	128799783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11042.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	27.46	33.7	15.4	32.58	27.41	40.14	28.23	26.41	64.32	62.26	50.25	45.42
Merged-chr19-14598357-3	chr19	14598266	14598466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302950)	promoter-TSS (NM_001302950)	-183.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	472.04	401.69	410.73	376.46	387.01	475.69	363.06	341.72	423.86	455.41	511.53	218.66
Merged-chr11-78177520-3	chr11	78177414	78177614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291235)	promoter-TSS (NM_001291235)	-635.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	22.61	15.34	21.68	6.44	25.36	17.56	11.63	16.04	23.6	23.1	24.62	12.84
Merged-chr14-121423644-3	chr14	121423543	121423743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44413.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	44.42	39.74	65.03	63.55	60.55	39.51	35.21	53.92	53.89	36.65	45.73	24.12
Merged-chr2-93457909-3	chr2	93457806	93458006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	3945.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	134.46	84.51	105.53	82.85	71.59	124.49	91.68	79.51	89.49	93.39	112.05	41.98
Merged-chr11-3649121-3	chr11	3649031	3649231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159288)	promoter-TSS (NM_001159288)	-317.0	NR_002321	544752.0	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	148.6	128.28	144.9	127.9	122.32	162.74	107.96	127.91	183.51	178.25	201.5	110.27
Merged-chr9-78451597-3	chr9	78451520	78451720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026658, intron 3 of 11)	RSINE1|SINE|B4	3410.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	28.67	25.15	26.81	34.99	24.14	32.3	35.54	36.31	40.52	34.14	54.27	24.43
Merged-chr2-151494181-3	chr2	151494063	151494263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291074)	promoter-TSS (NM_001291074)	-19.0	NM_001291074	386649.0	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	104.99	119.22	100.97	82.45	132.14	126.06	98.32	120.53	175.64	171.72	173.86	120.61
Merged-chr1-151598046-3	chr1	151597933	151598133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	L3|LINE|CR1	26660.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	118.31	93.57	123.79	108.59	130.91	139.54	89.69	97.79	110.54	142.1	117.08	58.27
Merged-chr11-110426992-3	chr11	110426893	110427093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	27891.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	81.97	39.74	67.31	41.83	43.36	50.17	36.87	44.1	65.5	49.21	67.84	32.89
Merged-chr2-164862601-3	chr2	164862500	164862700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4892.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	59.76	49.8	50.77	84.46	76.91	100.66	96.99	91.07	103.85	88.87	115.07	68.61
Merged-chr2-101733003-3	chr2	101732903	101733103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 7 of 8)	MTEb|LTR|ERVL-MaLR	54583.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	98.12	89.8	142.04	135.54	113.73	127.31	112.61	135.9	154.01	112.97	192.95	111.52
Merged-chr13-100152829-3	chr13	100152737	100152937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 12 of 15)	intron (NM_001126182, intron 12 of 15)	27982.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	83.18	87.78	123.79	91.3	102.68	109.44	58.13	91.49	99.52	111.47	105.02	49.5
Merged-chr19-29485499-3	chr19	29485392	29485592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36495.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	14.94	12.58	27.38	16.89	32.73	39.51	66.77	41.78	43.66	30.13	47.23	18.17
Merged-chr7-4812824-3	chr7	4812713	4812913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-473.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	188.17	172.55	167.14	174.15	212.73	256.19	160.11	178.54	276.94	290.72	338.17	150.99
Merged-chr7-105650870-3	chr7	105650775	105650975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153392, intron 2 of 3)	intron (NR_153392, intron 2 of 3)	10430.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	15.34	23.14	19.4	20.51	27.82	22.58	21.59	26.41	18.69	18.58	32.66	13.16
Merged-chr4-49521160-3	chr4	49521088	49521288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	12.0	NM_001289901	230162.0	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	74.3	81.75	115.23	95.32	129.69	122.92	96.99	178.94	123.72	112.47	229.13	92.41
Merged-chr7-143069231-3	chr7	143069145	143069345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115085)	promoter-TSS (NM_001115085)	-123.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	210.78	215.56	256.71	218.8	216.42	298.83	224.22	215.94	305.85	374.57	422.59	221.79
Merged-chr16-35776469-2	chr16	35776405	35776605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152314, intron 1 of 8)	MTC|LTR|ERVL-MaLR	6119.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	18.57	10.82	16.54	16.49	18.82	12.86	25.24	20.24	6.88	6.03	22.61	4.39
Merged-chr14-118691089-3	chr14	118690975	118691175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-14144.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	37.96	34.46	36.51	47.06	42.96	26.97	31.56	64.15	40.71	31.13	38.69	32.27
Merged-chr3-95740716-3	chr3	95740613	95740813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356965, intron 17 of 17)	intron (NM_001356965, intron 17 of 17)	-1144.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	41.99	48.54	32.52	26.14	58.91	56.76	32.88	63.79	83.79	61.26	67.84	49.81
Merged-chr5-124623145-3	chr5	124623060	124623260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026486, intron 14 of 18)	intron (NM_026486, intron 14 of 18)	-5892.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	27.05	28.67	30.8	26.55	26.18	29.16	30.56	31.65	28.72	21.59	29.14	15.66
Merged-chr3-108840609-3	chr3	108840490	108840690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-88.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	95.3	100.36	92.98	99.75	90.41	126.06	64.77	74.58	109.16	122.51	129.64	77.69
Merged-chr7-35710523-3	chr7	35710416	35710616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178704, intron 12 of 18)	intron (NM_178704, intron 12 of 18)	43938.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	34.32	38.99	41.07	67.57	53.59	47.66	82.71	58.4	24.98	28.62	51.25	27.25
Merged-chr12-70999730-3	chr12	70999613	70999813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	16110.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	118.31	127.78	123.79	142.78	126.0	126.68	95.33	132.56	162.27	150.63	187.43	109.33
Merged-chr10-24670805-1	chr10	24670705	24670905	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308329, intron 6 of 24)	intron (NM_001308329, intron 6 of 24)	41354.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	3.63	3.02	5.7	14.48	8.18	6.27	27.57	44.16	0.59	2.01	2.01	1.88
Merged-chr2-113848851-3	chr2	113848728	113848928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	-167.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	24.23	24.4	12.55	22.52	24.96	27.28	32.55	16.79	17.9	27.11	27.13	20.36
Merged-chr11-105589490-3	chr11	105589431	105589631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181071)	promoter-TSS (NM_181071)	-455.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	53.7	58.35	36.51	39.01	55.64	58.64	33.55	34.15	62.94	70.8	51.76	37.59
Merged-chr15-12322051-3	chr15	12321982	12322182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025673, intron 1 of 3)	CpG	586.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	26.65	27.67	29.66	25.34	29.05	26.97	40.86	24.06	37.57	40.17	39.7	19.11
Merged-chr1-191201389-3	chr1	191201300	191201500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18067.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	91.66	72.69	84.43	77.22	88.37	114.14	71.42	101.78	90.48	116.99	108.03	82.39
Merged-chr10-91170737-3	chr10	91170630	91170830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283048)	promoter-TSS (NM_001283048)	-180.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	36.75	54.83	51.34	33.38	44.59	44.84	38.2	39.03	62.94	67.78	58.29	39.16
Merged-chr16-18687098-3	chr16	18687003	18687203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57165.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	36.75	23.64	34.23	47.86	69.14	89.05	81.05	102.42	33.44	18.08	72.86	29.13
Merged-chr4-136206280-3	chr4	136206196	136206396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355698)	promoter-TSS (NM_001355698)	-69.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	39.17	17.1	18.83	34.19	31.5	34.18	18.93	24.28	14.95	27.62	23.62	12.84
Merged-chr15-80255998-3	chr15	80255875	80256075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009716, intron 1 of 2)	CpG	791.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	109.43	61.88	83.29	58.72	72.82	125.74	64.77	65.24	112.11	117.49	102.0	60.15
Merged-chr2-5417844-3	chr2	5417746	5417946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	38456.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	41.19	33.45	37.08	60.33	37.64	37.32	20.26	32.69	39.14	31.13	45.22	29.76
Merged-chr7-127968372-2	chr7	127968289	127968489	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	910.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	9.29	8.8	8.56	8.45	12.27	21.32	11.96	12.67	28.32	13.05	22.61	18.8
Merged-chr4-11485908-3	chr4	11485811	11486011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347055)	promoter-TSS (NM_001347055)	-47.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	193.01	167.77	233.32	199.89	208.64	243.33	165.42	214.4	225.8	221.93	309.03	150.05
Merged-chr7-80425717-3	chr7	80425622	80425822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-20286.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	28.67	19.62	23.96	25.34	38.05	34.18	30.89	43.18	25.77	9.54	37.18	27.88
Merged-chr5-117891276-3	chr5	117891175	117891375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	MER47A|DNA|TcMar-Tigger	24436.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	25.84	22.39	37.08	13.27	18.41	51.11	27.9	21.39	38.16	45.69	37.18	24.75
Merged-chr17-88118095-3	chr17	88117986	88118186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7426.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	29.07	17.86	24.53	23.73	36.0	47.04	22.59	46.82	60.58	59.75	76.38	29.76
Merged-chr11-79339552-3	chr11	79339463	79339663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010897)	promoter-TSS (NM_010897)	-329.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	52.49	46.03	42.21	32.98	45.0	52.05	20.26	29.5	65.89	68.79	38.69	41.35
Merged-chr16-90916267-3	chr16	90916154	90916354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18595.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	37.55	29.43	31.95	19.31	51.55	72.44	48.5	54.9	48.39	58.75	68.84	23.49
Merged-chr8-110618620-3	chr8	110618555	110618755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	88.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	65.01	55.08	72.45	69.18	53.18	72.44	50.16	49.68	48.98	67.78	77.88	40.41
Merged-chr11-34778413-3	chr11	34778311	34778511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	5494.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	31.5	32.2	38.79	23.73	20.46	27.28	26.57	28.4	30.49	43.18	35.17	25.37
Merged-chr4-135946439-3	chr4	135946342	135946542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-6.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	58.55	48.8	37.08	50.27	51.96	76.83	43.18	54.62	82.41	76.82	82.91	55.13
Merged-chr6-86585288-3	chr6	86585213	86585413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42861.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	162.73	173.3	178.55	154.44	167.32	236.75	139.18	138.25	218.13	267.62	232.15	127.81
Merged-chr16-32332191-3	chr16	32332074	32332274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177633)	promoter-TSS (NM_177633)	-78.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	41.99	46.03	43.93	43.04	47.46	71.18	21.26	42.45	75.53	60.25	67.84	33.52
Merged-chr9-82975618-4	chr9	82975480	82975680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-91.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	54.92	72.94	63.32	56.31	49.09	70.24	57.47	62.02	67.66	72.3	58.79	39.47
Merged-chr3-122498136-1	chr3	122498036	122498236	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355264, intron 1 of 9)	intron (NM_001355264, intron 1 of 9)	14567.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.63	1.01	14.83	4.02	5.32	9.09	2.99	12.53	6.69	1.51	7.54	5.95
Merged-chr6-67037446-3	chr6	67037352	67037552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-45.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	188.17	203.23	189.96	249.36	189.41	204.45	168.41	247.09	209.67	193.31	313.05	120.61
Merged-chr1-184558389-3	chr1	184558292	184558492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040472)	promoter-TSS (NR_040472)	-701.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	39.57	37.48	33.66	21.72	45.82	68.36	48.16	37.46	42.29	42.18	32.66	15.98
Merged-chr13-45912070-3	chr13	45911972	45912172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	52919.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	30.69	18.36	31.95	32.18	27.41	39.2	21.26	22.12	18.1	33.14	38.69	21.93
Merged-chr12-108179463-3	chr12	108179356	108179556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028262)	promoter-TSS (NM_028262)	-172.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	247.93	252.28	269.26	243.73	292.51	352.14	260.42	315.09	312.14	348.46	413.04	209.58
Merged-chr2-180257287-3	chr2	180257186	180257386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-93.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	196.65	190.91	181.41	195.47	269.6	266.22	167.41	199.15	252.94	301.26	318.07	173.86
Merged-chr5-144255975-3	chr5	144255761	144255961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018772, exon 2 of 3)	exon (NM_018772, exon 2 of 3)	636.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	22.21	27.42	20.54	20.91	22.09	37.32	36.54	22.82	34.42	33.14	32.66	28.51
Merged-chr10-19094506-3	chr10	19094405	19094605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47244.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	71.47	70.93	48.49	81.65	67.91	97.83	59.13	70.01	81.63	100.92	113.56	57.01
Merged-chr15-86225278-3	chr15	86225195	86225395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	10836.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	130.43	118.47	185.97	174.96	162.41	148.95	160.11	172.4	122.73	118.5	207.53	133.14
Merged-chr4-19709184-3	chr4	19709130	19709330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276292)	promoter-TSS (NM_001276292)	-226.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	165.96	167.27	223.05	201.9	181.64	200.37	134.2	192.03	184.3	212.89	294.96	133.14
Merged-chr5-24445230-3	chr5	24445115	24445315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023229)	promoter-TSS (NM_023229)	20.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	71.88	64.89	73.59	103.77	83.87	79.02	96.66	98.24	76.31	95.9	116.58	55.13
Merged-chr8-35375574-3	chr8	35375485	35375685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177741)	promoter-TSS (NM_177741)	-156.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	37.96	31.44	45.07	32.18	56.87	45.15	39.53	47.83	33.83	43.18	46.23	23.18
Merged-chr12-112762273-3	chr12	112762184	112762384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1629.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	68.24	53.58	112.38	117.84	87.96	68.36	67.1	88.71	65.1	74.31	86.43	59.83
Merged-chr2-94010774-3	chr2	94010640	94010840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026944)	promoter-TSS (NM_026944)	-10.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	31.09	24.4	18.25	16.89	38.86	44.21	50.49	39.42	65.1	56.24	71.35	44.17
Merged-chr2-158500202-3	chr2	158500093	158500293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291138)	TTS (NM_001291138)	-2419.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	28.27	31.44	26.81	26.95	27.41	54.25	27.9	26.69	24.59	31.13	32.66	15.98
Merged-chr2-25054448-3	chr2	25054343	25054543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	64.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	41.19	55.34	38.22	62.34	47.05	57.38	46.5	45.03	55.47	61.26	83.41	37.59
Merged-chr14-66223821-3	chr14	66223725	66223925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-10001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	139.71	127.27	162.58	155.25	118.64	153.34	112.94	124.21	131.78	125.53	149.24	93.04
Merged-chr17-26242229-3	chr17	26242120	26242320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2022.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	24.63	24.9	18.83	18.1	26.18	48.6	16.94	21.25	40.71	31.13	28.14	17.86
Merged-chr7-143095753-3	chr7	143095638	143095838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1096.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	30.28	30.43	62.75	49.07	25.77	24.77	29.9	39.84	53.3	41.67	51.25	45.11
Merged-chr19-46502223-3	chr19	46502127	46502327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053100, exon 1 of 6)	5' UTR (NM_053100, exon 1 of 6)	579.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	10.5	26.66	26.24	23.33	18.0	19.44	11.96	16.54	20.65	18.08	37.69	32.27
Merged-chr8-68183970-3	chr8	68183869	68184069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92559.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	83.18	65.65	57.05	84.86	55.64	71.49	28.57	47.19	62.55	81.34	70.85	30.07
Merged-chr10-37338393-3	chr10	37338315	37338515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-199489.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	178.48	206.76	148.89	153.24	202.92	258.7	186.02	161.8	201.61	272.64	245.71	105.88
Merged-chr12-76957867-3	chr12	76957766	76957966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4382.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	36.75	47.79	42.21	60.33	55.23	52.37	37.87	65.75	70.61	56.74	97.48	49.81
Merged-chr5-108268808-3	chr5	108268706	108268906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026106)	promoter-TSS (NM_026106)	-91.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	92.07	60.12	103.25	87.28	74.05	94.07	59.13	97.6	98.54	65.78	157.78	50.75
Merged-chr10-81402324-1	chr10	81402224	81402424	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7251.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	12.11	12.07	14.83	18.1	20.46	8.78	24.25	29.5	15.54	12.55	20.6	18.48
Merged-chr7-55986724-3	chr7	55986630	55986830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153578, intron 3 of 4)	intron (NM_153578, intron 3 of 4)	24199.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	38.76	45.78	33.66	42.63	40.5	67.42	39.86	58.63	48.19	37.16	48.24	26.0
Merged-chr9-110532364-3	chr9	110532256	110532456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081340)	promoter-TSS (NM_001081340)	-241.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	64.2	95.58	75.87	57.11	73.64	84.04	75.73	78.84	89.1	90.88	121.6	66.1
Merged-chr4-149793367-3	chr4	149793247	149793447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19080.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	18.57	28.17	32.52	21.32	20.86	25.4	15.28	18.2	25.18	21.59	29.14	15.04
Merged-chr2-167886678-3	chr2	167886595	167886795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45632.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	24.63	25.66	49.63	26.55	63.0	56.76	41.19	47.89	64.12	52.22	58.79	35.09
Merged-chr1-97662073-3	chr1	97661977	97662177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-59.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	50.47	44.77	39.93	55.1	50.73	40.76	50.82	70.77	58.42	52.22	61.81	31.64
Merged-chr16-36656120-3	chr16	36655947	36656147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	B3|SINE|B2	10030.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	93.68	74.7	116.37	98.54	117.41	140.79	96.99	109.54	104.44	109.46	120.09	59.21
Merged-chr10-8873790-1	chr10	8873690	8873890	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	12280.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.65	8.55	2.28	2.41	13.5	8.47	10.3	13.85	12.0	13.56	4.02	7.21
Merged-chr5-36563973-3	chr5	36563883	36564083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	18414.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	48.05	33.7	83.86	77.62	31.91	32.3	55.8	60.31	34.03	16.57	52.26	31.95
Merged-chr2-137608758-1	chr2	137608658	137608858	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-492238.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	4.04	2.01	3.42	9.25	3.68	3.76	8.64	17.78	1.18	3.01	4.52	2.19
Merged-chr6-108829094-1	chr6	108828994	108829194	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138677, exon 1 of 12)	exon (NM_138677, exon 1 of 12)	453.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	16.96	8.8	20.54	16.89	15.14	20.7	23.58	13.6	23.21	17.57	30.15	21.93
Merged-chr8-121652998-3	chr8	121652904	121653104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-14599	-1071.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	132.04	135.07	183.69	154.85	195.96	222.64	150.14	201.37	179.18	194.31	303.0	113.72
Merged-chr2-131160145-3	chr2	131160064	131160264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-83.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	124.77	103.13	135.77	113.82	111.28	164.94	77.73	116.47	144.96	136.07	158.78	83.02
Merged-chr15-78607753-3	chr15	78607664	78607864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 5 of 12)	intron (NM_028195, intron 5 of 12)	10717.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	96.1	98.1	78.15	107.79	126.0	147.69	102.64	112.99	129.81	145.11	145.22	81.76
Merged-chr13-97302106-1	chr13	97302006	97302206	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61001.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	4.85	5.03	6.85	15.69	2.86	1.25	7.31	9.08	2.56	6.03	4.52	0.94
Merged-chr19-37434735-3	chr19	37434610	37434810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-131.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	81.97	62.63	68.45	71.59	55.64	68.05	28.57	61.77	53.11	48.2	44.22	29.45
Merged-chr11-83733275-3	chr11	83733173	83733373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-13667.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	31.09	31.94	23.39	38.61	45.41	74.32	29.56	34.35	45.43	44.69	48.24	25.37
Merged-chr15-98933998-3	chr15	98933907	98934107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011654, intron 1 of 3)	CpG	383.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	52.9	57.6	53.05	54.7	39.27	58.32	35.21	35.16	56.25	70.29	68.34	43.23
Merged-chr8-126572487-3	chr8	126572374	126572574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20962.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	47.24	36.72	26.81	34.59	51.55	72.75	41.85	47.02	43.47	75.32	58.29	38.53
Merged-chr3-95042607-3	chr3	95042516	95042716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-2.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	82.37	69.67	69.6	66.36	104.73	102.22	44.18	75.84	99.33	113.48	133.16	68.61
Merged-chr16-13818700-3	chr16	13818617	13818817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	-534.0	NM_010946	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	111.85	88.03	104.96	88.89	96.96	94.39	56.14	95.27	144.76	108.45	194.96	73.62
Merged-chr6-108876186-3	chr6	108876075	108876275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47534.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	19.79	15.09	25.67	20.91	25.77	26.34	11.29	12.14	16.33	7.53	16.58	2.82
Merged-chr11-11886554-3	chr11	11886456	11886656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	3852.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	65.82	60.87	61.61	52.69	45.82	77.45	60.79	66.22	107.39	96.91	104.01	46.05
Merged-chr1-182905895-1	chr1	182905795	182905995	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48893.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.23	0.0	1.14	1.61	4.09	0.94	11.96	8.78	4.52	1.0	5.02	4.07
Merged-chr1-43098599-3	chr1	43098510	43098710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	18.0	NM_001013025	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	106.6	122.24	120.94	100.15	124.37	158.04	109.62	104.94	95.2	120.51	135.17	71.42
Merged-chr6-58916748-3	chr6	58916633	58916833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361966, intron 24 of 25)	intron (NM_001361966, intron 24 of 25)	-9607.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	27.86	22.89	38.79	30.16	47.46	57.07	96.99	123.08	84.97	79.33	95.47	46.99
Merged-chr7-99147105-3	chr7	99147001	99147201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5957.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	70.26	57.1	64.46	67.97	78.55	82.16	46.17	64.93	103.26	101.93	107.53	60.46
Merged-chrX-160502529-1	chrX	160502429	160502629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001358968, exon 1 of 15)	5' UTR (NM_001358968, exon 1 of 15)	367.0	NM_001177878	110094.0	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	35.13	19.62	23.96	33.38	26.59	29.79	33.88	37.01	23.01	39.67	18.59	25.69
Merged-chr7-30308683-3	chr7	30308581	30308781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198027)	promoter-TSS (NM_198027)	-72.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	138.5	120.73	136.34	141.57	166.91	198.81	120.91	204.53	173.09	176.74	275.36	96.49
Merged-chr13-113614125-3	chr13	113614032	113614232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4432.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	28.67	19.87	35.37	36.2	84.68	82.16	105.63	99.28	91.66	86.86	140.19	61.4
Merged-chr3-34019952-3	chr3	34019843	34020043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-136.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	94.89	71.94	94.7	76.02	91.23	110.06	89.69	109.4	105.23	136.07	150.74	51.69
Merged-chr2-128817968-3	chr2	128817900	128818100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028248)	promoter-TSS (NM_028248)	-303.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	111.04	83.76	81.58	62.34	123.96	119.47	74.41	70.91	134.73	165.19	138.69	88.65
Merged-chr10-98880296-3	chr10	98880207	98880407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34335.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	113.47	71.43	95.27	123.48	100.23	123.55	103.64	136.91	170.33	159.67	175.87	96.8
Merged-chr9-7332031-3	chr9	7331951	7332151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12346.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	25.04	19.12	46.78	25.74	49.09	62.09	62.45	75.25	49.37	60.75	64.32	23.18
Merged-chr11-79207933-3	chr11	79207840	79208040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35084.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	37.15	31.94	43.93	39.82	37.64	37.32	19.93	23.22	46.62	57.24	56.78	38.85
Merged-chr12-17715874-3	chr12	17715752	17715952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	25043.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	34.32	38.99	59.9	51.88	60.96	64.91	46.5	73.93	63.14	57.74	104.52	43.86
Merged-chr7-135651941-3	chr7	135651848	135652048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	49.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	25.04	21.88	24.53	16.89	26.18	24.15	27.57	23.38	42.88	33.64	52.26	27.57
Merged-chr8-35520107-1	chr8	35520007	35520207	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24574.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.0	0.5	0.0	0.0	0.82	0.0	0.0	0.42	19.87	17.07	24.12	6.58
Merged-chr15-82987945-3	chr15	82987838	82988038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28642.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	41.19	41.25	46.21	49.07	70.37	66.48	41.52	71.75	52.52	68.79	82.91	31.33
Merged-chr9-108716352-3	chr9	108716238	108716438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 2 of 10)	intron (NM_008924, intron 2 of 10)	24195.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	18.57	15.85	15.97	31.37	24.96	25.71	14.28	33.9	20.26	21.59	36.18	22.56
Merged-chr16-33836800-3	chr16	33836707	33836907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7142.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	20.19	13.58	15.4	19.31	48.68	26.65	17.27	44.78	17.11	25.11	26.13	20.99
Merged-chr15-6304006-3	chr15	6303911	6304111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	4222.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	61.38	53.32	47.35	57.11	49.5	57.7	46.17	52.01	41.5	54.23	45.22	25.37
Merged-chr10-128923103-3	chr10	128923004	128923204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015740, intron 1 of 3)	CpG	420.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	53.7	68.16	69.6	49.07	83.05	118.84	60.79	100.82	106.01	103.43	131.65	78.0
Merged-chr3-122924291-3	chr3	122924179	122924379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046036)	promoter-TSS (NR_046036)	-118.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	67.84	58.1	45.64	73.6	69.55	63.03	92.01	70.43	58.02	59.25	88.94	40.1
Merged-chr2-167632125-3	chr2	167632040	167632240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311131)	promoter-TSS (NM_001311131)	-135.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	110.64	131.05	118.08	109.4	148.1	137.34	90.68	106.85	193.15	191.8	159.79	98.68
Merged-chr2-165043182-3	chr2	165043101	165043301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8422.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	21.0	38.48	61.04	22.12	14.32	30.73	13.95	20.44	63.73	41.67	46.23	29.76
Merged-chr11-120905664-3	chr11	120905563	120905763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	27209.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	19.38	25.66	27.38	16.49	26.18	27.59	16.61	13.12	15.34	20.59	28.14	14.1
Merged-chr3-145576260-3	chr3	145576184	145576384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346521)	promoter-TSS (NM_001346521)	68.0	NM_001346521	229937.0	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	29.88	38.74	58.19	40.22	49.5	45.47	55.14	39.34	38.75	42.68	56.78	28.51
Merged-chr3-83055404-3	chr3	83055299	83055499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-139.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	251.56	213.8	249.86	274.3	290.05	305.42	209.93	301.77	279.69	247.04	429.12	159.14
Merged-chr12-84761888-1	chr12	84761788	84761988	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	11224.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	16.96	10.31	7.99	17.7	18.82	14.42	10.63	15.95	17.51	16.57	20.1	13.78
Merged-chr16-92861818-3	chr16	92861712	92861912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-35738.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	43.21	31.44	27.95	48.67	55.64	82.78	57.13	79.51	79.27	98.91	98.49	63.91
Merged-chr9-109875467-3	chr9	109875349	109875549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-130.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	128.41	115.45	140.9	109.8	130.91	129.82	85.37	101.22	200.23	187.29	227.12	119.67
Merged-chr2-119618594-3	chr2	119618488	119618688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042653)	promoter-TSS (NM_001042653)	-83.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	126.39	95.33	72.45	90.9	110.87	140.79	81.05	106.26	172.89	168.21	153.76	89.28
Merged-chr9-119402015-3	chr9	119401908	119402108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-170.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	112.66	104.64	107.82	143.99	110.87	140.79	88.36	110.75	170.53	181.26	187.43	95.86
Merged-chr10-120208771-3	chr10	120208658	120208858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-68.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	75.91	79.23	61.04	55.1	69.96	83.41	48.5	61.71	110.15	116.49	137.18	64.85
Merged-chr2-130450312-3	chr2	130450232	130450432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	54.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	41.59	48.04	39.93	57.92	40.91	49.54	44.18	47.86	42.29	50.21	60.3	33.83
Merged-chr4-137861767-1	chr4	137861667	137861867	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-470.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	14.13	13.33	9.13	12.07	22.91	17.56	20.26	19.18	12.0	3.51	7.03	8.77
Merged-chr3-65658993-3	chr3	65658905	65659105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106200)	promoter-TSS (NR_106200)	-283.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	99.74	67.66	107.25	85.27	105.96	115.39	128.55	180.62	102.87	77.32	148.73	89.91
Merged-chr17-6655924-3	chr17	6655820	6656020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199948)	promoter-TSS (NM_001199948)	19.0	NM_001199948	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	63.4	73.95	45.64	62.34	69.55	88.11	55.47	24.59	36.98	25.61	38.69	16.92
Merged-chr12-85599318-3	chr12	85599220	85599420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-96.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	120.73	105.64	112.95	105.78	99.41	152.08	111.61	144.28	124.5	142.1	205.01	71.74
Merged-chr1-191062964-3	chr1	191062874	191063074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163421)	promoter-TSS (NM_001163421)	-42.0	NM_026895	68972.0	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	30.28	24.15	27.95	37.4	16.77	31.98	10.96	25.09	29.9	30.63	42.21	26.31
Merged-chr10-99181712-3	chr10	99181620	99181820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73585.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	107.41	116.46	172.85	195.07	135.0	175.29	170.07	200.94	121.75	112.47	207.53	124.99
Merged-chr6-121130234-3	chr6	121130134	121130334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	788.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	17.36	19.87	24.53	16.49	18.0	31.67	16.28	24.53	32.45	26.11	34.17	23.18
Merged-chr8-84270486-3	chr8	84270387	84270587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294281)	promoter-TSS (NM_001294281)	-85.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	253.99	243.48	260.7	252.18	256.92	322.35	189.34	267.81	290.51	329.88	334.15	182.32
Merged-chr1-39469207-3	chr1	39469103	39469303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	9544.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	18.17	14.09	21.11	19.71	20.46	22.89	31.22	32.69	23.6	18.08	29.65	20.36
Merged-chr6-50060126-3	chr6	50060027	50060227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-50114.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	22.21	25.91	37.65	24.53	19.23	41.71	21.59	38.36	46.42	21.59	59.29	21.3
Merged-chr1-165667100-3	chr1	165667002	165667202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-32561.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	98.93	57.1	112.95	109.0	98.18	90.0	119.91	152.47	107.98	98.41	183.91	80.82
Merged-chr9-44552386-2	chr9	44552287	44552487	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-25966.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	2.83	2.01	1.14	0.8	19.23	24.15	17.27	14.89	48.58	59.25	58.79	23.18
Merged-chr6-54699598-1	chr6	54699498	54699698	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17974.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.4	1.01	0.0	0.0	0.41	0.0	0.0	0.95	23.01	32.13	48.74	20.99
Merged-chr11-89002376-3	chr11	89002336	89002536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	3033.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	10.09	7.04	15.4	17.7	12.68	16.62	16.61	13.91	33.63	21.09	27.64	18.8
Merged-chr16-58511609-3	chr16	58511426	58511626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	B1_Mus2|SINE|Alu	11900.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	21.0	18.61	22.25	21.72	35.18	22.26	23.58	14.38	30.29	41.67	40.7	20.68
Merged-chr6-47748497-1	chr6	47748397	47748597	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4266.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	1.14	0.0	0.0	0.63	0.0	0.0	30.49	22.59	24.12	23.49
Merged-chr15-99651701-3	chr15	99651605	99651805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-49.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	63.8	54.33	26.24	47.86	72.82	71.18	28.57	35.8	67.46	58.75	52.26	33.21
Merged-chr1-92180878-2	chr1	92180777	92180977	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-536.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	68.24	51.06	82.15	63.95	84.68	79.02	57.13	83.61	108.38	124.52	132.66	91.47
Merged-chr2-150921849-3	chr2	150921742	150921942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	12248.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	51.69	41.0	56.48	48.26	76.91	69.3	65.77	80.3	69.43	73.31	84.92	52.0
Merged-chr9-77936101-3	chr9	77936009	77936209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	18744.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	30.69	23.64	19.97	22.52	31.5	46.72	19.6	31.57	38.94	33.14	30.15	28.82
Merged-chrX-104413765-3	chrX	104413589	104413789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009592, exon 1 of 16)	exon (NM_009592, exon 1 of 16)	157.0	NM_009592	11306.0	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	25.04	21.88	19.4	34.19	28.23	23.83	30.89	29.02	34.42	19.58	36.18	21.62
Merged-chr10-19691986-3	chr10	19691876	19692076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20611.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	153.85	150.41	161.44	161.28	153.0	170.27	136.52	130.71	171.12	210.38	222.6	116.85
Merged-chr1-167336585-3	chr1	167336493	167336693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13398.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	32.71	17.1	29.09	22.12	30.68	31.98	26.24	39.67	37.17	23.6	47.23	24.43
Merged-chr9-103305155-3	chr9	103305064	103305264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176979)	promoter-TSS (NM_176979)	-163.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	24.63	31.19	52.48	47.06	63.41	58.01	38.2	49.85	105.03	85.86	122.61	50.75
Merged-chr10-86886617-3	chr10	86886538	86886738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	107633.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	64.61	48.8	73.59	48.26	50.73	68.36	47.83	89.86	83.2	66.78	72.86	61.71
Merged-chr5-138207429-2	chr5	138207334	138207534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13120.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	44.42	35.21	59.9	78.83	86.32	75.57	58.79	86.08	1.77	1.0	0.0	1.25
Merged-chr11-59208718-2	chr11	59208610	59208810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024210, intron 1 of 6)	CpG	349.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	19.38	13.08	24.53	9.65	17.59	16.93	11.63	13.77	31.27	19.58	27.64	11.59
Merged-chr13-41552104-3	chr13	41552027	41552227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54089.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	12.92	19.12	24.53	30.57	29.86	30.42	12.62	31.71	35.4	33.14	28.64	25.06
Merged-chr7-90016674-3	chr7	90016572	90016772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12487.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	32.71	31.44	30.23	21.32	49.09	30.1	28.9	47.19	34.22	29.12	34.17	34.15
Merged-chr12-98268664-3	chr12	98268576	98268776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	41.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	44.82	38.48	55.33	44.24	36.41	48.29	29.56	27.42	47.99	49.21	82.41	25.37
Merged-chr13-64398269-3	chr13	64398187	64398387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27767.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	19.79	14.09	23.39	28.56	44.59	43.9	28.9	49.43	15.74	27.62	23.62	12.22
Merged-chr15-10470665-3	chr15	10470550	10470750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030046)	promoter-TSS (NM_030046)	-134.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	62.99	56.59	34.8	30.57	72.41	68.36	60.79	57.76	82.81	59.25	110.04	51.38
Merged-chr15-80030698-3	chr15	80030623	80030823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-15915.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	33.11	27.67	45.07	45.05	44.18	47.66	39.86	45.08	32.45	27.62	27.64	26.0
Merged-chr1-136135218-3	chr1	136135099	136135299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3809.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	101.35	101.11	135.2	118.25	125.59	141.73	132.87	166.68	142.01	113.98	178.38	87.4
Merged-chr10-59236647-3	chr10	59236521	59236721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14699.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	97.31	89.29	111.24	69.58	109.23	123.23	80.05	96.93	130.4	114.98	163.81	85.52
Merged-chr9-78050587-3	chr9	78050484	78050684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1374.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	115.49	85.27	86.14	86.88	67.09	128.56	89.35	82.96	119.0	109.46	129.64	73.3
Merged-chr14-73525025-3	chr14	73524944	73525144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172527, intron 3 of 4)	CpG	205.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	56.94	87.03	70.74	64.75	51.14	74.0	73.74	41.89	59.6	69.79	92.46	47.3
Merged-chr14-106681433-3	chr14	106681334	106681534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-194914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	64.2	42.76	65.6	99.34	95.32	98.78	64.44	128.94	98.34	96.4	117.58	57.95
Merged-chr1-60657237-3	chr1	60657143	60657343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89145.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	31.9	27.92	33.66	43.04	38.46	42.65	39.2	51.14	44.65	29.12	54.77	35.4
Merged-chr13-64161784-3	chr13	64161686	64161886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019986)	promoter-TSS (NM_019986)	-80.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	254.39	221.85	260.7	279.13	272.05	326.43	272.05	288.45	314.31	325.87	472.33	227.43
Merged-chr4-126046944-3	chr4	126046857	126047057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025544)	promoter-TSS (NM_025544)	29.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	67.03	68.42	90.7	83.66	101.46	116.96	57.8	90.0	78.09	88.37	117.58	57.64
Merged-chr6-137687875-2	chr6	137687763	137687963	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38578.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	2.41	29.86	36.06	23.25	26.75	19.08	22.09	38.19	11.9
Merged-chr2-32236558-3	chr2	32236452	32236652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-131.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	58.15	53.83	41.07	54.7	67.09	64.28	54.14	49.26	71.2	63.77	57.28	51.38
Merged-chr4-117182658-3	chr4	117182545	117182745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-21.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	39.17	35.47	42.21	41.02	28.64	43.27	20.59	36.9	55.86	68.29	72.36	43.23
Merged-chr10-14103313-3	chr10	14103192	14103392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	136913.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	42.4	45.28	74.73	55.5	45.41	61.15	47.5	68.92	56.45	49.21	98.49	39.78
Merged-chr8-34904293-3	chr8	34904200	34904400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	MER90a|LTR|ERV1	61390.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	35.53	37.98	72.45	78.43	71.59	53.93	82.38	104.52	67.27	62.76	103.01	46.68
Merged-chr16-50756893-3	chr16	50756798	50756998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24125.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	22.21	32.95	24.53	22.12	30.27	39.51	36.87	41.5	44.84	38.16	61.81	22.24
Merged-chr12-69446563-3	chr12	69446499	69446699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28951.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	39.17	40.5	50.2	47.86	43.36	61.77	65.44	59.72	32.65	31.13	36.18	29.76
Merged-chr4-130913287-3	chr4	130913190	130913390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-44.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	59.76	34.71	49.06	57.11	71.18	58.95	36.54	61.77	63.33	71.8	77.38	50.44
Merged-chr16-55807758-1	chr16	55807658	55807858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14380.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	13.73	12.83	1.14	2.41	9.0	29.48	0.66	1.51	4.52	5.52	1.0	0.94
Merged-chr8-90938624-3	chr8	90938520	90938720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	6371.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	54.11	29.68	33.09	32.18	40.5	62.4	53.81	64.93	34.81	22.59	35.68	26.0
Merged-chr13-21753923-3	chr13	21753817	21754017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178183)	promoter-TSS (NM_178183)	-5.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	82.78	65.9	78.15	102.56	85.5	79.96	61.45	97.57	98.54	106.45	127.13	80.51
Merged-chr10-81285860-3	chr10	81285768	81285968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-87.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	50.07	50.56	40.5	71.99	70.77	92.19	45.84	61.46	82.02	110.97	82.91	57.01
Merged-chr2-52897235-3	chr2	52897166	52897366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39398.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	73.09	36.22	81.58	88.08	82.64	58.32	93.01	85.57	80.45	85.86	103.51	59.83
Merged-chr13-43777538-3	chr13	43777421	43777621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7591.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	49.67	30.18	48.49	45.45	88.78	69.3	42.19	58.71	63.14	51.72	62.81	34.77
Merged-chr11-64079514-3	chr11	64079373	64079573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033780)	promoter-TSS (NR_033780)	-1.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	34.32	38.48	34.8	48.67	43.77	52.99	32.88	59.1	55.27	52.22	57.28	29.13
Merged-chr7-122300757-1	chr7	122300657	122300857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	11632.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	57.74	41.75	52.48	26.14	3.27	5.64	1.33	3.7	5.11	7.03	6.53	2.82
Merged-chr4-147922354-3	chr4	147922252	147922452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 10 of 18)	MER58B|DNA|hAT-Charlie	14424.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	12.11	15.85	15.97	14.88	22.09	18.5	13.29	22.63	32.06	29.12	29.65	15.35
Merged-chr10-4111891-1	chr10	4111791	4111991	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	101229.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	14.94	3.27	3.99	5.63	10.23	25.4	21.59	14.52	1.38	3.01	1.51	1.88
Merged-chr15-25634324-3	chr15	25634219	25634419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	11769.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	110.64	113.69	99.83	84.46	27.82	46.72	47.17	54.45	45.63	53.73	65.32	31.64
Merged-chr7-104465613-3	chr7	104465504	104465704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-411.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	38.36	27.42	24.53	30.97	29.05	43.59	28.57	30.87	46.22	53.22	53.26	25.69
Merged-chr2-84826975-3	chr2	84826873	84827073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-48.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	24.63	32.95	38.22	43.44	25.77	42.65	36.21	46.21	57.04	62.76	84.92	31.95
Merged-chr2-14207013-3	chr2	14206912	14207112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-22402.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	47.24	40.5	62.18	58.72	69.55	53.93	47.83	68.41	72.18	75.82	67.33	50.44
Merged-chr4-144892378-3	chr4	144892285	144892485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-442.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	89.64	97.34	107.25	117.84	69.55	104.11	80.05	105.81	136.89	119.5	168.33	84.9
Merged-chr15-3270997-2	chr15	3270884	3271084	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	7.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	30.28	21.38	17.11	17.7	29.05	31.36	19.27	21.25	41.11	29.12	44.72	16.29
Merged-chr11-110697214-3	chr11	110697122	110697322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217882.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	37.96	23.39	43.93	48.67	43.36	63.03	32.88	52.88	46.22	46.7	60.3	32.89
Merged-chr9-37613676-3	chr9	37613563	37613763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	57.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	100.14	114.19	95.84	114.22	134.19	106.61	88.03	98.89	183.31	190.3	193.46	114.34
Merged-chr18-53312146-3	chr18	53312041	53312241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	66479.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	56.94	50.81	79.86	90.9	97.37	70.87	72.41	120.17	68.64	66.28	126.12	61.09
Merged-chr1-180357909-3	chr1	180357813	180358013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-27364.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	43.61	54.83	28.52	28.56	28.23	59.27	24.58	27.08	34.22	47.2	28.64	15.04
Merged-chr1-165614977-3	chr1	165614868	165615068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	19573.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	50.88	30.18	71.88	66.36	74.46	49.23	67.1	83.52	52.52	66.78	76.38	49.18
Merged-chr7-5125951-3	chr7	5125837	5126037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009028)	promoter-TSS (NM_009028)	13.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	37.55	28.93	19.97	31.77	24.96	33.55	19.27	28.51	41.89	32.64	39.7	27.25
Merged-chr5-134932292-3	chr5	134932200	134932400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-73.0	NM_001359536	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	41.99	28.67	25.1	36.6	57.68	70.55	25.91	47.86	52.32	44.69	50.25	39.47
Merged-chr10-53596837-3	chr10	53596742	53596942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-119.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	130.02	134.82	175.7	174.55	180.82	187.52	140.51	206.52	190.59	168.21	283.4	143.79
Merged-chr6-119388810-3	chr6	119388731	119388931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355692)	promoter-TSS (NM_001355692)	-97.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	94.49	73.45	65.6	58.32	93.68	129.19	73.08	79.96	150.66	110.46	159.79	52.32
Merged-chr16-96145318-3	chr16	96145216	96145416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207301)	promoter-TSS (NM_207301)	-103.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	188.57	229.9	218.48	266.66	250.37	251.17	242.15	281.89	280.28	297.75	416.06	151.31
Merged-chr8-88118694-3	chr8	88118598	88118798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-61.0	NM_029074	382030.0	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	170.81	154.94	153.45	128.3	140.73	146.75	152.47	137.75	141.62	141.59	147.73	109.33
Merged-chr4-156109884-3	chr4	156109776	156109976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-122.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	191.8	214.55	229.89	269.07	204.55	197.86	152.47	214.09	209.47	216.41	277.37	162.9
Merged-chr5-99415245-3	chr5	99415145	99415345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-162318.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	89.24	52.82	66.17	62.74	81.0	84.35	53.48	75.28	96.38	80.84	69.85	34.46
Merged-chr10-66848962-3	chr10	66848857	66849057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71427.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	8.88	10.82	29.09	19.71	29.86	25.4	18.93	41.75	34.22	29.62	35.17	23.81
Merged-chr17-57275228-3	chr17	57275154	57275354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3846.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	32.71	19.12	39.36	9.65	23.73	24.77	13.95	25.93	18.88	25.61	27.64	18.8
Merged-chr6-129436247-3	chr6	129436150	129436350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15750.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	35.13	34.21	50.77	54.3	79.37	83.41	66.43	59.47	66.09	86.36	105.02	57.64
Merged-chr7-129528498-3	chr7	129528414	129528614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63349.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	45.63	31.69	59.9	63.95	52.37	58.64	60.12	69.9	68.45	40.67	59.8	44.8
Merged-chr15-58749288-3	chr15	58749193	58749393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74134.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	21.4	16.35	18.25	22.93	38.46	18.19	17.61	37.74	32.06	20.08	30.15	24.75
Merged-chr5-140419327-3	chr5	140419216	140419416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	11.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	25.44	11.32	11.41	9.65	23.32	26.97	18.93	12.62	39.93	30.13	31.66	30.07
Merged-chr14-21757759-3	chr14	21757664	21757864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359953, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6212.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	46.84	48.54	51.91	41.43	47.05	73.69	32.88	60.22	71.2	65.78	53.77	47.93
Merged-chr11-87461937-3	chr11	87461836	87462036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	34345.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	42.4	29.93	41.64	35.39	52.77	45.78	34.21	36.06	40.12	33.64	57.28	35.71
Merged-chr6-66896799-1	chr6	66896699	66896899	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177558)	promoter-TSS (NM_001177558)	-92.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	16.96	15.34	13.69	10.46	24.96	20.07	20.59	22.09	15.34	15.57	22.11	15.35
Merged-chr1-178337829-3	chr1	178337745	178337945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-30.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	97.72	91.56	77.58	89.69	92.87	137.03	76.73	74.75	168.17	144.1	177.88	87.09
Merged-chr11-120930144-1	chr11	120930044	120930244	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 1 of 18)	RLTR33|LTR|ERVK	2728.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.63	3.02	11.41	1.61	0.82	1.88	1.66	2.1	15.34	5.52	24.62	8.77
Merged-chr7-30420422-3	chr7	30420317	30420517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011827)	promoter-TSS (NM_011827)	-563.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	81.97	71.18	96.41	57.51	91.64	109.44	89.35	70.12	115.65	105.94	140.19	78.63
Merged-chr13-48962773-3	chr13	48962680	48962880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5048.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	99.33	70.18	124.36	129.51	89.18	81.53	160.44	179.41	90.28	87.87	178.88	97.43
Merged-chr2-117342874-3	chr2	117342764	117342964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	13.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	39.57	38.74	32.52	28.56	34.77	31.67	26.24	28.35	51.53	48.7	46.73	29.45
Merged-chr5-120516668-3	chr5	120516568	120516768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5476.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	86.41	83.0	98.69	76.82	93.68	119.47	123.9	125.97	144.96	143.1	176.87	92.1
Merged-chr5-96160663-3	chr5	96160552	96160752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	895.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	25.44	12.58	18.83	26.55	23.73	20.07	10.63	31.93	26.36	32.13	34.67	13.78
Merged-chr17-26532867-3	chr17	26532806	26533006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24434.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	145.77	104.38	149.46	127.1	149.73	126.37	122.57	142.09	114.28	141.59	136.68	97.11
Merged-chr14-76287939-3	chr14	76287836	76288036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36474.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	46.03	44.77	67.31	73.2	50.32	78.08	41.52	67.32	60.58	50.71	62.31	30.07
Merged-chr9-50948265-3	chr9	50948164	50948364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	60809.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	36.34	28.17	29.09	40.22	21.68	21.01	29.23	42.81	38.16	21.09	34.67	21.93
Merged-chr5-43869369-3	chr5	43869250	43869450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	541.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	50.07	78.48	71.31	67.17	59.73	103.17	93.34	60.62	119.78	133.06	172.35	57.64
Merged-chr15-55113611-3	chr15	55113546	55113746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-64.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	39.57	33.96	51.34	37.4	36.82	50.8	23.25	37.85	64.12	26.11	53.77	25.69
Merged-chr10-94967410-3	chr10	94967320	94967520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22842.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	22.61	22.13	11.98	15.28	34.36	39.2	27.24	31.29	54.09	30.63	33.16	17.23
Merged-chr15-31601781-3	chr15	31601673	31601873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	73.0	NM_007637	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	113.47	157.96	125.5	135.54	132.14	172.78	85.04	127.07	162.66	168.21	142.2	97.74
Merged-chr19-23758338-3	chr19	23758256	23758456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-520.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	30.28	32.95	31.95	33.38	33.96	51.74	26.57	41.75	45.24	61.26	61.81	33.21
Merged-chr2-170129425-3	chr2	170129264	170129464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1856.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	21.8	27.67	22.82	14.08	17.18	31.04	10.3	17.38	52.12	32.64	34.17	9.71
Merged-chr10-75832371-3	chr10	75832290	75832490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010361, intron 4 of 4)	intron (NM_010361, intron 4 of 4)	2491.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	17.36	17.61	19.97	15.28	13.91	21.01	11.29	19.15	27.34	23.1	23.62	13.16
Merged-chr11-69323893-3	chr11	69323807	69324007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	-34.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	153.44	155.19	140.33	132.32	153.82	202.88	84.37	127.01	168.96	180.26	159.29	100.87
Merged-chr2-92459756-3	chr2	92459658	92459858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	36.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	44.82	32.95	46.78	47.06	60.96	51.74	33.88	40.79	41.5	38.16	62.31	39.47
Merged-chr2-23069215-3	chr2	23069107	23069307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001102438, exon 1 of 13)	5' UTR (NM_001102438, exon 1 of 13)	135.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	37.15	45.78	33.09	37.0	38.46	21.64	41.52	38.27	38.94	30.13	39.7	37.59
Merged-chr7-88270713-3	chr7	88270618	88270818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7367.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	46.03	47.04	63.32	61.94	65.87	62.71	80.05	72.67	49.57	70.8	83.41	31.95
Merged-chr1-82724971-3	chr1	82724906	82725106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310699, exon 1 of 7)	5' UTR (NM_001310699, exon 1 of 7)	116.0	NM_001310695	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	59.76	73.95	53.62	75.61	59.32	76.51	99.32	58.77	65.1	98.91	72.86	60.77
Merged-chr15-8340805-3	chr15	8340716	8340916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103647.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	52.49	41.75	35.37	46.66	40.91	49.54	32.55	58.51	60.19	55.23	50.25	33.83
Merged-chr14-51089545-3	chr14	51089463	51089663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1514.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	94.08	66.91	73.02	131.52	85.5	80.27	72.08	89.83	56.65	34.14	67.33	40.72
Merged-chr9-106199248-3	chr9	106199082	106199282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	51.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	27.86	46.03	46.21	46.66	47.87	52.99	44.51	36.98	43.86	37.16	42.71	27.88
Merged-chr4-139741919-2	chr4	139741819	139742019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011039, intron 8 of 8)	MTD|LTR|ERVL-MaLR	88381.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	21.0	9.31	47.35	38.61	0.0	0.0	0.0	0.0	21.05	22.59	46.23	26.0
Merged-chr4-139235734-1	chr4	139235634	139235834	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	41623.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.04	4.02	10.84	0.0	33.14	49.54	29.23	19.37	11.41	6.03	1.51	3.13
Merged-chr4-141273442-3	chr4	141273332	141273532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5007.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	27.05	16.1	10.27	16.49	19.64	26.97	11.96	16.29	32.26	35.15	36.68	25.06
Merged-chr13-66907111-1	chr13	66907011	66907211	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177750, intron 1 of 2)	intron (NM_001177750, intron 1 of 2)	1696.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	0.0	0.25	0.0	0.8	0.0	0.63	1.99	0.81	42.48	52.72	39.7	28.19
Merged-chr11-70230565-3	chr11	70230440	70230640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-742.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	29.07	34.71	21.11	17.29	28.23	37.94	14.28	12.95	22.23	26.61	23.62	11.9
Merged-chr15-101257020-3	chr15	101256904	101257104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9842.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	44.01	39.99	39.93	34.59	40.09	62.71	28.23	36.11	61.56	51.72	87.43	22.87
Merged-chr14-21890654-3	chr14	21890542	21890742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-41732.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	35.13	47.54	63.89	32.58	123.14	157.41	84.37	112.04	120.96	123.02	110.55	62.65
Merged-chr4-134245630-3	chr4	134245535	134245735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	-44.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	72.28	64.89	62.75	55.1	72.82	90.31	38.86	45.73	89.3	91.89	71.35	53.88
Merged-chr13-8677394-1	chr13	8677294	8677494	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	193650.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	1.21	0.0	2.85	1.21	4.09	3.76	12.29	7.07	1.57	3.51	3.52	2.82
Merged-chrX-159144866-3	chrX	159144777	159144977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110905.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	21.0	25.4	19.97	29.76	19.23	21.32	14.62	18.08	35.4	20.59	22.61	6.58
Merged-chr9-48422500-3	chr9	48422393	48422593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31851.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	21.4	25.4	36.51	33.78	29.46	30.42	29.23	29.75	45.04	48.2	65.32	32.27
Merged-chr3-146653800-3	chr3	146653698	146653898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2481.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	46.84	66.65	43.93	45.05	85.09	68.99	78.06	95.89	79.86	74.81	96.98	55.13
Merged-chr11-70764445-3	chr11	70764319	70764519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177565)	promoter-TSS (NM_177565)	-28.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	18.17	20.37	30.8	14.88	15.55	23.2	17.94	21.2	23.6	29.62	25.12	16.29
Merged-chr10-127622267-2	chr10	127622152	127622352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1104.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	28.27	16.35	32.52	20.91	24.14	31.36	30.23	30.56	29.7	33.64	37.69	23.18
Merged-chr18-53256367-3	chr18	53256260	53256460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	L1MC5|LINE|L1	10698.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	29.48	27.17	47.92	32.98	47.87	37.94	37.87	53.24	35.21	23.1	54.27	27.57
Merged-chr6-17637070-4	chr6	17637009	17637209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007604)	promoter-TSS (NM_007604)	99.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	102.56	121.99	137.48	98.54	120.28	133.9	108.95	104.78	150.66	191.3	189.94	105.26
Merged-chr11-101119978-3	chr11	101119889	101120089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134024)	promoter-TSS (NM_134024)	-142.0	NM_134024	103733.0	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	186.96	157.96	179.12	151.23	175.1	200.37	95.67	135.37	169.74	186.78	138.18	97.11
Merged-chr16-57121616-5	chr16	57121489	57121689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138599)	promoter-TSS (NM_138599)	-125.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	53.3	85.27	81.0	107.39	93.28	104.11	134.53	93.2	96.57	110.46	122.61	83.02
Merged-chr2-16335431-3	chr2	16335313	16335513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20891.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	35.13	23.14	41.64	56.31	67.5	33.87	65.11	97.49	56.65	30.63	73.86	48.87
Merged-chr1-182528124-3	chr1	182528008	182528208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10498.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	42.4	44.27	51.91	37.4	62.59	93.44	36.21	57.11	57.24	76.82	71.35	32.27
Merged-chr11-63045999-3	chr11	63045898	63046098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15661.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	24.63	16.6	30.8	20.11	36.82	46.41	35.54	43.82	51.53	43.68	63.82	38.53
Merged-chr11-97127237-3	chr11	97127144	97127344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11913.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	17.36	31.69	37.08	27.35	37.64	32.93	23.25	12.36	26.36	35.15	29.14	19.42
Merged-chr2-118026013-3	chr2	118025911	118026111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	(TG)n|Simple_repeat|Simple_repeat	85191.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	62.59	49.05	74.16	69.18	69.55	72.75	53.48	73.01	25.37	33.14	38.19	35.09
Merged-chr2-93458866-3	chr2	93458762	93458962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2989.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	85.2	99.35	92.98	41.83	74.05	120.1	103.31	50.36	131.19	98.41	92.96	40.41
Merged-chr6-31177048-3	chr6	31176942	31177142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41432.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	23.02	25.4	37.08	22.12	29.46	32.93	22.59	29.61	33.24	34.65	37.69	15.35
Merged-chr6-128381427-3	chr6	128381344	128381544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027697, intron 2 of 2)	intron (NM_027697, intron 2 of 2)	5934.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	40.78	47.54	39.36	33.78	25.77	24.15	34.21	38.86	47.8	7.03	22.11	33.21
Merged-chrX-7574363-3	chrX	7574218	7574418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290574)	promoter-TSS (NM_001290574)	-37.0	NM_138605	54646.0	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	47.65	45.53	40.5	37.81	56.46	54.56	32.88	61.15	69.82	96.91	100.5	53.57
Merged-chrX-56455949-3	chrX	56455843	56456043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	CpG-15696	1104.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	79.55	48.54	81.0	115.83	79.37	78.39	72.08	97.07	92.05	79.33	161.3	68.61
Merged-chr1-43471443-3	chr1	43471337	43471537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	25686.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	29.88	50.56	27.95	21.72	33.55	71.18	29.9	11.89	63.53	66.78	63.82	10.34
Merged-chr15-66742748-3	chr15	66742650	66742850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	71980.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	41.99	38.99	35.94	45.45	41.73	45.78	33.88	37.4	34.03	32.13	70.35	17.86
Merged-chr4-133968068-3	chr4	133967975	133968175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-84.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	31.09	29.93	41.07	30.97	36.82	38.26	25.58	22.37	34.03	47.7	25.63	35.09
Merged-chr6-135161499-3	chr6	135161381	135161581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	MIR3|SINE|MIR	6734.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	61.78	34.71	51.91	59.93	36.82	43.59	44.18	54.2	44.25	56.24	70.85	35.4
Merged-chr13-8995377-4	chr13	8995298	8995498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027000, intron 1 of 16)	intron (NM_027000, intron 1 of 16)	614.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	15.75	14.34	13.69	10.05	13.91	13.48	5.65	12.0	18.69	19.58	14.57	20.68
Merged-chr2-83644448-3	chr2	83644347	83644547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-131.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	144.96	118.72	104.39	129.51	155.05	173.41	134.53	169.77	185.87	195.32	247.22	129.38
Merged-chr12-69516703-3	chr12	69516609	69516809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41159.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	64.2	62.63	74.73	57.11	87.14	85.29	62.78	95.38	103.85	101.43	116.07	65.47
Merged-chr16-91933387-3	chr16	91933295	91933495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1765.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	47.24	33.45	53.62	52.69	43.77	61.46	32.88	53.41	52.12	50.21	58.29	39.78
Merged-chr10-88712593-3	chr10	88712486	88712686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18515.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	87.22	79.73	86.14	104.17	87.55	97.21	120.91	80.5	93.62	116.49	90.95	54.82
Merged-chr10-68204678-2	chr10	68204599	68204799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74027.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	21.8	32.7	26.24	22.52	27.82	37.32	26.24	30.17	0.2	3.51	2.01	2.82
Merged-chr14-25457800-3	chr14	25457695	25457895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1390.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	42.4	25.15	34.8	25.34	20.05	36.69	23.92	36.9	35.21	30.63	40.7	17.86
Merged-chrX-143483067-3	chrX	143482968	143483168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-35523.0	NM_001195048	18481.0	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 (RAC1) activated kinase 3	protein-coding	145.37	231.91	184.83	258.61	176.73	158.35	251.12	251.02	245.07	314.32	255.76	318.28
Merged-chr8-109687505-3	chr8	109687425	109687625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 1 of 10)	MLTR31A_MM|LTR|ERVK	5769.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	66.22	47.29	114.66	80.04	49.09	53.62	67.76	60.36	76.51	42.18	130.14	40.41
Merged-chr7-66369247-3	chr7	66369154	66369354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	L1MC5|LINE|L1	12470.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	31.9	35.47	49.06	46.66	39.27	48.6	31.22	40.46	47.6	43.68	61.81	23.81
Merged-chr4-133672584-3	chr4	133672489	133672689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	58.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	58.55	61.37	42.21	45.05	58.5	78.08	44.51	41.8	41.5	73.81	55.27	36.97
Merged-chr3-135597160-3	chr3	135597064	135597264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	94383.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	37.55	40.75	44.5	46.25	32.32	23.83	38.2	51.65	34.81	23.6	38.69	31.95
Merged-chr5-115516266-3	chr5	115516168	115516368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	9592.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	104.18	86.78	116.37	80.84	121.91	121.98	85.7	113.16	109.56	105.94	155.77	79.57
Merged-chr6-90477321-2	chr6	90477223	90477423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001355668, exon 3 of 3)	3' UTR (NM_001355668, exon 3 of 3)	14747.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	20.19	17.36	19.4	28.15	5.32	13.8	12.29	18.9	7.28	12.05	11.56	5.95
Merged-chr1-74434720-3	chr1	74434625	74434825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310662)	TTS (NM_001310662)	25341.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	89.24	82.5	92.41	85.27	105.14	136.72	77.73	94.04	103.85	123.02	91.95	61.71
Merged-chrX-167231334-3	chrX	167231224	167231424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22106.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	40.78	34.71	30.23	46.66	54.41	27.91	31.22	45.45	52.32	46.19	77.38	31.64
Merged-chr11-44546422-3	chr11	44546330	44546530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27053.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	28.67	23.9	23.39	26.95	26.18	35.12	19.93	31.68	48.19	22.09	40.2	25.37
Merged-chr9-58271366-3	chr9	58271259	58271459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18195.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	80.36	59.61	71.31	64.35	92.05	79.96	53.48	62.97	114.08	99.92	76.38	59.83
Merged-chr9-16215533-3	chr9	16215438	16215638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	162693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	159.1	144.13	205.36	239.31	122.73	138.91	103.31	216.23	197.67	169.71	285.41	139.09
Merged-chr5-107987026-6	chr5	107986885	107987085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	92.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	17.77	32.2	13.12	32.98	27.0	23.52	14.95	22.15	24.0	40.17	29.14	7.52
Merged-chr1-52232445-3	chr1	52232366	52232566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081081, intron 1 of 17)	CpG	766.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	40.38	47.04	49.63	45.05	38.05	59.27	36.54	48.56	78.28	68.79	84.92	40.72
Merged-chr4-12008268-3	chr4	12008182	12008382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41708.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	27.86	36.72	30.23	47.46	41.73	47.66	29.56	47.36	51.14	45.19	46.73	29.13
Merged-chr6-31081436-3	chr6	31081322	31081522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18329.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	66.22	68.92	87.28	76.42	87.14	148.95	113.93	116.58	147.71	122.51	171.35	74.87
Merged-chrUn_JH584304-328-1	chrUn_JH584304	228	428	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59361.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	27.34	25.11	19.6	12.84
Merged-chr1-121327878-3	chr1	121327789	121327989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271531)	promoter-TSS (NM_001271531)	135.0	NM_001357251	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	116.29	93.82	124.93	133.93	105.96	115.39	124.23	115.71	84.18	82.85	130.65	61.09
Merged-chr17-50182650-3	chr17	50182541	50182741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	7856.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	18.98	22.89	27.95	24.13	29.46	52.37	48.5	60.2	45.24	28.12	29.14	25.37
Merged-chr2-164943071-3	chr2	164942983	164943183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5136.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	118.72	128.53	124.93	135.94	175.1	166.19	115.93	139.51	169.35	149.63	211.04	116.54
Merged-chr14-63410680-3	chr14	63410592	63410792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6495.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	23.82	14.59	27.38	19.31	21.27	18.19	38.2	43.46	21.44	10.04	25.63	14.72
Merged-chr17-67448243-3	chr17	67448149	67448349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93758.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	17.36	17.1	24.53	22.52	22.5	20.38	26.57	33.36	20.65	18.58	25.12	18.48
Merged-chr14-25401726-3	chr14	25401634	25401834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57451.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	38.36	43.01	37.08	16.49	36.41	120.1	50.49	20.58	33.63	30.13	36.68	6.89
Merged-chr10-20505672-3	chr10	20505570	20505770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	42658.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	98.93	75.71	108.39	105.78	89.18	115.71	91.01	111.25	75.72	64.27	78.89	49.81
Merged-chr2-92055545-3	chr2	92055435	92055635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31365.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	58.15	35.21	38.22	39.01	33.14	49.54	28.9	37.88	59.4	33.64	45.73	23.81
Merged-chr9-72791868-3	chr9	72791785	72791985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15389.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	38.36	38.74	63.32	56.31	54.41	35.75	27.9	46.43	30.29	33.14	25.12	25.69
Merged-chr5-3342401-3	chr5	3342297	3342497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1496.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	33.11	29.18	19.97	28.96	27.41	33.24	27.24	29.89	33.24	33.14	34.67	36.03
Merged-chr3-100692481-3	chr3	100692374	100692574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7001.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	30.69	32.45	38.22	30.57	29.46	34.18	41.85	45.31	69.23	50.71	58.29	34.46
Merged-chr17-49428362-3	chr17	49428258	49428458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	-6.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	100.55	71.94	101.54	62.74	94.91	148.01	60.46	124.49	152.63	146.61	213.05	80.82
Merged-chr1-13513994-3	chr1	13513899	13514099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS-int|LTR|ERV1	75911.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	29.88	29.43	47.92	33.78	40.5	39.51	46.17	56.47	34.62	30.13	65.83	35.09
Merged-chr4-123951849-3	chr4	123951746	123951946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34413.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	25.44	24.9	47.35	36.2	19.23	30.73	35.54	60.08	34.03	28.12	35.68	23.81
Merged-chr11-98783499-3	chr11	98783429	98783629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8152.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	99.74	125.76	130.63	106.58	133.78	130.13	119.25	123.08	142.21	138.08	149.74	81.76
Merged-chr8-36247196-3	chr8	36247086	36247286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	2330.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	49.26	39.99	55.9	44.64	78.55	65.54	55.14	71.61	100.51	68.29	134.67	51.69
Merged-chr14-24490655-3	chr14	24490551	24490751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207635)	promoter-TSS (NM_207635)	-27.0	NM_207635	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	79.95	79.23	61.61	64.75	65.87	77.14	47.83	74.8	105.03	103.43	130.14	76.12
Merged-chr11-98795113-3	chr11	98794999	98795199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361932)	promoter-TSS (NM_001361932)	-417.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	23.02	18.86	23.39	24.13	16.77	24.46	17.94	15.7	31.47	35.15	17.59	22.24
Merged-chr11-116657996-3	chr11	116657906	116658106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163318, intron 2 of 4)	intron (NM_001163318, intron 2 of 4)	898.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	62.59	35.97	57.05	37.81	56.87	52.05	31.56	42.48	60.78	53.73	55.27	29.13
Merged-chr2-160070576-3	chr2	160070481	160070681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53928.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	124.37	125.51	102.68	113.42	108.82	127.0	83.71	91.82	146.14	145.11	108.03	98.37
Merged-chr2-128806778-3	chr2	128806690	128806890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	99.74	67.91	79.29	71.99	70.37	99.09	62.78	83.5	61.76	92.39	90.45	52.0
Merged-chr17-65717709-3	chr17	65717627	65717827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 2 of 6)	intron (NM_133685, intron 2 of 6)	55025.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	98.12	112.43	136.91	152.03	87.96	86.55	90.35	119.78	120.96	94.4	174.36	87.4
Merged-chr10-80692385-3	chr10	80692311	80692511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	ID_B1|SINE|B4	9409.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	48.05	40.24	29.66	37.81	38.05	44.21	27.24	24.0	51.53	56.24	38.69	44.8
Merged-chr3-34069142-3	chr3	34069026	34069226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001113188, exon 17 of 17)	3' UTR (NM_001113188, exon 17 of 17)	12228.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	21.4	13.33	22.82	23.33	33.96	19.13	28.9	22.29	18.88	23.6	26.13	16.92
Merged-chr6-32511109-3	chr6	32511006	32511206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040277)	promoter-TSS (NR_040277)	-35.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	27.86	18.36	45.64	50.68	40.5	30.73	31.89	49.43	32.45	12.55	51.25	22.87
Merged-chr12-51968060-3	chr12	51967965	51968165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	3256.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	32.71	24.9	36.51	42.63	23.32	40.14	26.24	53.89	49.37	38.16	50.25	25.37
Merged-chr10-24133371-3	chr10	24133272	24133472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15917.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	27.86	18.36	23.39	37.0	31.09	37.63	22.92	35.3	32.45	33.14	38.69	23.18
Merged-chr17-88112464-3	chr17	88112337	88112537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-13075.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	130.02	146.39	104.39	65.56	160.78	243.33	124.56	98.94	247.43	235.49	213.56	108.08
Merged-chr5-137684852-3	chr5	137684772	137684972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303266)	promoter-TSS (NM_001303266)	-119.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	165.15	138.09	123.79	119.86	164.46	177.8	128.55	137.38	200.62	177.24	206.02	102.44
Merged-chr6-29264546-3	chr6	29264450	29264650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7938.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	79.14	52.07	92.98	47.06	93.28	101.6	73.08	80.24	94.41	88.87	95.97	63.28
Merged-chr6-87672284-3	chr6	87672193	87672393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-125.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	172.02	174.06	205.36	188.63	231.96	221.7	170.07	210.08	245.66	200.34	287.92	151.31
Merged-chr10-127603901-3	chr10	127603796	127603996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17252.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	25.44	11.32	17.11	12.07	33.55	31.98	14.95	27.28	35.21	53.22	32.66	31.01
Merged-chr2-4559649-3	chr2	4559567	4559767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-87.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	54.11	46.03	83.86	58.72	67.91	58.32	64.77	91.04	53.7	59.25	109.04	40.41
Merged-chr17-43077779-3	chr17	43077665	43077865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	61210.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	60.97	38.99	37.08	21.72	38.05	46.41	33.55	28.68	36.39	24.6	44.72	22.24
Merged-chr19-47148567-3	chr19	47148452	47148652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	36.75	43.51	48.49	38.61	50.32	86.55	44.84	45.84	62.15	58.24	51.76	26.31
Merged-chr8-124863101-3	chr8	124862981	124863181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025615)	promoter-TSS (NM_025615)	48.0	NM_010322	14712.0	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	89.24	68.42	76.44	61.54	92.05	113.2	65.77	80.47	96.38	83.85	108.54	60.15
Merged-chr2-27768006-3	chr2	27767896	27768096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	57413.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	50.88	34.46	30.23	34.19	42.55	60.52	22.26	28.88	38.16	57.74	65.32	32.27
Merged-chr15-25632368-3	chr15	25632289	25632489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9839.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	45.23	46.28	36.51	30.97	24.96	30.42	34.88	32.58	27.34	29.12	31.66	18.17
Merged-chr2-158076927-3	chr2	158076825	158077025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291136, exon 6 of 6)	3' UTR (NM_001291136, exon 6 of 6)	14872.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	31.09	27.92	64.46	77.62	33.14	38.26	30.23	44.75	35.6	35.15	74.37	33.21
Merged-chr7-45062510-4	chr7	45062419	45062619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	90.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	29.07	24.9	14.83	12.87	28.64	34.81	15.94	15.62	28.72	23.1	18.09	21.62
Merged-chr1-54250695-3	chr1	54250588	54250788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	5.0	NM_030025	78016.0	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	69.05	74.2	60.47	101.35	119.87	129.19	110.95	139.63	83.4	108.96	162.8	77.69
Merged-chr15-95799799-3	chr15	95799682	95799882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8939.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	37.15	34.21	53.05	58.72	35.18	52.37	41.19	55.88	48.39	34.14	68.84	35.4
Merged-chr17-34264181-3	chr17	34264083	34264283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207105, intron 1 of 5)	intron (NM_207105, intron 1 of 5)	956.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	42.4	73.7	63.32	39.82	21.27	34.18	21.59	16.77	55.27	32.64	46.23	32.58
Merged-chr6-121230099-3	chr6	121229995	121230195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-15811.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	22.21	14.84	25.67	27.75	28.23	20.07	27.57	28.54	23.8	30.63	31.15	25.06
Merged-chr6-122309889-3	chr6	122309781	122309981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1161.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	44.01	46.78	49.06	33.38	63.0	78.71	51.49	46.37	96.77	80.84	69.85	37.28
Merged-chr6-40594989-3	chr6	40594890	40595090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9185.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	20.19	15.85	23.96	22.93	29.05	47.35	30.23	44.38	41.3	49.71	54.77	25.69
Merged-chr7-100582926-3	chr7	100582843	100583043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003559, intron 1 of 7)	CpG	187.0	NM_198831	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	26.25	17.36	24.53	20.11	28.23	25.4	10.63	7.96	18.49	24.6	20.6	16.92
Merged-chr1-166379140-3	chr1	166379029	166379229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-38.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	157.08	176.07	128.35	142.78	168.55	190.65	137.85	129.28	204.36	195.82	203.51	100.87
Merged-chr9-77961551-3	chr9	77961499	77961699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	44234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	73.89	68.92	68.45	79.64	81.82	86.23	85.04	93.73	93.43	68.79	93.96	44.17
Merged-chr6-89338866-3	chr6	89338753	89338953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	23760.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	31.09	39.24	49.63	43.84	15.96	37.63	28.57	54.06	32.65	24.6	46.23	20.36
Merged-chr14-17414721-1	chr14	17414621	17414821	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-246239.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	12.92	18.61	29.66	27.75	54.41	30.42	38.2	59.92	46.03	43.68	65.83	30.07
Merged-chr12-80132769-3	chr12	80132682	80132882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033514)	promoter-TSS (NR_033514)	62.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	56.94	84.51	74.16	68.37	63.0	83.1	69.42	59.08	80.45	106.45	85.42	48.24
Merged-chr14-118706324-3	chr14	118706231	118706431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-112.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	95.3	76.46	82.72	90.49	89.18	84.66	97.33	102.14	50.75	78.33	65.83	48.87
Merged-chr5-113945377-3	chr5	113945274	113945474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 14 of 14)	intron (NM_198109, intron 14 of 14)	-36668.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	50.88	64.89	73.59	60.73	107.59	107.56	85.04	114.17	73.56	72.3	157.78	53.88
Merged-chr17-12992452-3	chr17	12992365	12992565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	74.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	111.85	134.57	100.97	164.1	96.55	141.11	170.4	73.85	121.75	137.58	150.74	81.14
Merged-chr5-23978745-1	chr5	23978645	23978845	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	51567.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.63	1.51	15.97	4.02	31.09	29.79	30.89	59.8	8.26	3.51	8.04	2.19
Merged-chr15-59647674-3	chr15	59647565	59647765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-989.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	20.59	21.63	24.53	27.75	37.23	26.34	26.57	27.17	37.96	39.16	52.76	20.99
Merged-chr3-89801634-3	chr3	89801515	89801715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28006.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	55.32	58.35	51.91	37.0	56.87	90.0	37.2	41.94	63.14	53.73	80.4	30.07
Merged-chr16-95955903-3	chr16	95955794	95955994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26817.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	90.05	104.89	119.23	154.04	102.68	105.05	125.56	145.43	136.89	96.4	177.38	93.98
Merged-chr6-49073845-3	chr6	49073750	49073950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029353)	promoter-TSS (NM_029353)	55.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	68.65	61.62	77.58	94.92	77.32	79.96	83.04	106.35	71.4	75.82	92.96	80.82
Merged-chr8-72184003-3	chr8	72183895	72184095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5673.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	32.3	24.9	42.78	30.57	64.64	56.13	47.83	62.64	45.24	33.64	58.29	37.91
Merged-chr8-106145523-3	chr8	106145402	106145602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-4852.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	15.75	14.34	24.53	4.02	29.86	36.06	22.92	11.52	23.01	33.64	22.61	11.59
Merged-chr18-34506194-5	chr18	34506050	34506250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	673.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	20.19	10.82	15.4	17.7	5.32	14.42	15.61	16.51	20.26	23.6	18.09	18.48
Merged-chr15-73067606-3	chr15	73067512	73067712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6408.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	256.01	256.81	252.14	259.82	292.51	347.13	296.63	286.66	380.79	350.47	466.81	232.76
Merged-chr1-39478704-3	chr1	39478596	39478796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357522)	promoter-TSS (NM_001357522)	51.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	59.76	42.26	45.07	53.09	56.87	57.07	55.8	60.14	42.29	43.18	64.82	44.48
Merged-chr2-103566272-3	chr2	103566193	103566393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-17.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	81.97	59.61	103.82	77.22	61.77	69.3	63.44	82.68	68.64	56.74	113.56	51.38
Merged-chr7-16405762-1	chr7	16405662	16405862	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4566.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	3.23	4.02	10.27	7.24	11.45	6.9	5.98	10.82	12.0	7.03	7.54	5.95
Merged-chr4-129032864-3	chr4	129032772	129032972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25399.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	90.85	75.46	90.7	65.16	72.41	123.55	47.17	35.8	92.25	105.94	94.97	46.05
Merged-chr8-4238752-3	chr8	4238668	4238868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	28.0	NM_001164172	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	193.82	182.61	221.91	217.19	222.55	261.83	217.57	214.46	355.22	359.01	411.03	199.55
Merged-chr19-40659707-3	chr19	40659634	40659834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-36.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	56.13	34.46	66.17	87.28	61.77	48.6	59.13	64.46	64.51	56.74	77.38	39.16
Merged-chr5-64812729-3	chr5	64812631	64812831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	9208.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	84.8	46.03	51.91	61.13	38.46	59.89	29.56	58.23	44.84	32.13	54.77	31.33
Merged-chr3-51276763-3	chr3	51276648	51276848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-13.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	24.23	18.61	29.09	22.12	33.14	40.76	31.56	38.55	47.21	42.68	52.26	31.95
Merged-chr2-165955014-3	chr2	165954910	165955110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37627.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	35.94	17.61	50.77	42.63	42.55	44.84	32.55	65.83	45.43	37.16	60.3	34.77
Merged-chr19-16781049-3	chr19	16780943	16781143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-110.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	166.36	135.32	125.5	120.26	192.28	197.55	106.29	153.37	203.77	125.53	220.59	89.91
Merged-chr14-36864251-3	chr14	36864135	36864335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55300.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	37.96	30.69	39.93	51.48	63.41	79.65	56.14	88.07	56.84	46.7	55.27	39.47
Merged-chr6-16965841-3	chr6	16965747	16965947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67406.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	45.63	40.75	34.23	47.06	50.32	49.54	27.9	49.85	43.66	38.66	40.7	22.24
Merged-chr6-93122880-1	chr6	93122780	93122980	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	182298.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.86	4.28	4.56	6.84	31.91	22.89	21.59	28.63	2.75	7.03	7.54	1.57
Merged-chr7-25788762-3	chr7	25788665	25788865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-32.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	21.4	33.2	38.79	44.24	51.55	32.3	32.55	51.65	24.0	50.71	40.2	21.93
Merged-chr17-37045598-1	chr17	37045498	37045698	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019439)	promoter-TSS (NM_019439)	-368.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	14.13	12.58	7.42	11.66	18.0	14.42	6.98	10.91	14.16	15.57	20.1	10.96
Merged-chr8-11465443-3	chr8	11465339	11465539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	B2_Mm2|SINE|B2	-12490.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	23.82	16.85	21.68	18.9	39.27	59.89	32.55	33.06	40.32	45.69	41.71	36.34
Merged-chr18-80934046-3	chr18	80933959	80934159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	-1.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	96.51	83.76	47.92	56.71	101.05	104.42	63.78	63.11	116.24	138.58	127.13	75.5
Merged-chr3-146521231-6	chr3	146521186	146521386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027332, exon 1 of 5)	exon (NM_027332, exon 1 of 5)	137.0	NM_027332	70285.0	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	35.13	35.21	31.38	66.36	28.64	39.51	51.49	47.92	27.54	49.71	50.75	46.68
Merged-chr3-65319813-3	chr3	65319723	65319923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-17138.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	71.47	61.62	98.69	90.09	92.87	94.7	97.99	102.84	102.47	85.36	87.43	51.06
Merged-chr6-115015653-3	chr6	115015542	115015742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026894, intron 5 of 7)	intron (NM_026894, intron 5 of 7)	22232.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	32.3	35.21	46.78	41.02	36.0	62.09	51.82	57.31	59.4	57.74	87.93	39.16
Merged-chr17-56997226-3	chr17	56997129	56997329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-110.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	144.96	115.95	143.18	112.62	183.69	208.53	151.14	160.74	180.95	184.77	235.66	96.49
Merged-chr2-131233987-3	chr2	131233892	131234092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206385)	promoter-TSS (NM_001206385)	-71.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	132.44	104.13	122.08	121.46	119.87	116.96	95.0	143.08	142.8	100.92	165.82	76.12
Merged-chr12-75853714-3	chr12	75853616	75853816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	35398.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	29.48	32.95	65.03	59.12	28.23	33.55	39.86	76.96	32.85	24.6	46.73	30.07
Merged-chr19-37172948-3	chr19	37172836	37173036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-907.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	29.88	20.12	26.81	32.98	28.64	25.71	20.26	48.08	17.51	22.09	28.14	16.92
Merged-chr3-27650317-3	chr3	27650214	27650414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	60138.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	88.43	81.5	95.27	124.28	58.09	71.81	64.77	75.34	49.17	51.72	75.87	49.5
Merged-chr2-22589759-3	chr2	22589662	22589862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32565.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	302.04	253.54	300.06	338.65	400.51	375.66	481.98	0.08	489.16	454.41	549.21	244.66
Merged-chr7-45570338-3	chr7	45570249	45570449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243052)	promoter-TSS (NM_001243052)	196.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	18.57	18.61	14.83	24.53	33.96	20.07	18.6	23.24	21.83	19.08	19.6	17.86
Merged-chr14-120762967-3	chr14	120762881	120763081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-148213.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	60.17	63.39	79.86	82.45	99.41	79.65	53.81	105.76	88.12	76.82	103.01	63.91
Merged-chr17-73950277-3	chr17	73950191	73950391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-95.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	95.3	91.3	102.11	88.08	107.59	148.95	94.67	125.75	154.99	165.19	215.57	98.05
Merged-chr12-16828673-3	chr12	16828581	16828781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17716.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	16.15	12.83	15.4	24.94	19.64	27.91	15.61	24.73	25.37	25.61	40.2	17.86
Merged-chr16-44119922-3	chr16	44119822	44120022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19337.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	87.22	56.34	91.27	84.86	106.37	110.06	73.08	105.03	102.08	93.89	118.59	70.48
Merged-chrX-48256831-3	chrX	48256732	48256932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028276)	promoter-TSS (NM_028276)	-102.0	NM_028276	72554.0	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	104.18	73.45	71.31	101.35	86.32	122.92	76.73	93.34	138.86	113.98	143.71	64.53
Merged-chr12-34297200-3	chr12	34297097	34297297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 16 of 27)	intron (NM_001271386, intron 16 of 27)	231692.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	17.77	14.09	44.5	25.34	25.77	22.58	36.21	50.92	29.31	13.05	47.23	25.06
Merged-chr17-27555729-3	chr17	27555612	27555812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-862.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	55.32	55.84	40.5	26.95	52.77	66.16	29.9	35.38	77.3	91.89	47.74	46.99
Merged-chr1-65107815-3	chr1	65107714	65107914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285881, exon 8 of 8)	3' UTR (NM_001285881, exon 8 of 8)	-4451.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	19.38	20.12	27.38	26.95	27.41	25.71	20.59	31.21	42.29	22.59	27.64	23.49
Merged-chr17-43570643-3	chr17	43570541	43570741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	2190.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	47.24	77.47	63.32	84.06	84.28	89.68	77.73	54.62	61.76	64.77	51.25	24.43
Merged-chr13-56335030-3	chr13	56334955	56335155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27845.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	48.86	36.22	63.89	52.69	110.87	86.23	85.04	82.35	25.57	58.75	65.83	30.07
Merged-chr14-77547069-3	chr14	77546953	77547153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-40185.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	29.07	37.73	75.87	60.33	38.46	37.32	36.87	54.45	60.58	62.76	62.81	50.12
Merged-chr5-52669657-3	chr5	52669543	52669743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172490)	promoter-TSS (NM_172490)	58.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	25.44	22.39	24.53	30.16	42.96	34.81	46.17	26.5	45.04	54.23	55.78	29.76
Merged-chr10-81649053-3	chr10	81648980	81649180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142963)	promoter-TSS (NM_001142963)	11.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	65.41	60.62	65.6	53.09	66.68	78.08	60.79	46.32	70.02	76.32	96.48	35.71
Merged-chr7-80846110-3	chr7	80846024	80846224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15984.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	74.7	78.48	68.45	53.49	96.96	100.97	47.83	60.0	84.77	89.37	112.56	56.39
Merged-chr1-95314076-3	chr1	95313968	95314168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	440.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	64.2	46.28	50.77	55.91	52.77	56.76	69.76	83.92	78.87	76.32	99.49	83.96
Merged-chr4-132620157-1	chr4	132620057	132620257	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18889.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	1.62	1.01	4.56	0.8	6.55	2.82	2.33	1.23	31.67	34.65	31.15	19.11
Merged-chr6-43449593-3	chr6	43449498	43449698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	MTD|LTR|ERVL-MaLR	7169.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	39.17	41.25	24.53	72.8	53.18	59.89	45.51	64.54	49.57	51.21	56.78	31.01
Merged-chr16-21411908-3	chr16	21411821	21412021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11197.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	41.19	21.38	69.6	41.02	31.91	29.79	22.26	30.03	32.45	26.61	28.14	17.23
Merged-chr10-117909353-3	chr10	117909252	117909452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16107.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	83.59	89.04	69.03	54.7	64.64	98.46	64.11	72.45	47.99	45.69	42.21	23.18
Merged-chr1-134094450-3	chr1	134094353	134094553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15298.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	33.11	21.63	61.61	45.05	44.18	40.14	40.52	54.73	42.88	37.16	60.3	31.01
Merged-chr17-29489179-3	chr17	29489083	29489283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1862.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	90.45	67.16	53.05	67.57	47.87	93.76	42.19	47.07	110.74	91.89	81.9	52.63
Merged-chr10-18235148-3	chr10	18235066	18235266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144820)	promoter-TSS (NM_144820)	-185.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	92.47	122.49	102.68	117.84	93.28	93.44	120.25	101.94	74.15	94.9	128.64	70.48
Merged-chr18-82505159-3	chr18	82505043	82505243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	30020.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	77.93	75.46	71.88	64.35	101.05	118.53	92.68	89.1	101.88	107.45	164.81	75.5
Merged-chr1-178342250-3	chr1	178342156	178342356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4441.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	36.34	28.93	32.52	28.15	40.5	45.15	24.25	43.01	51.73	39.16	50.25	25.06
Merged-chr12-112644753-3	chr12	112644669	112644869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161737)	promoter-TSS (NM_001161737)	-59.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	271.35	276.18	319.46	296.42	238.92	334.27	247.8	294.23	370.36	384.61	450.22	229.94
Merged-chr8-78624217-3	chr8	78624123	78624323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	114895.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	78.74	54.33	59.9	65.96	94.5	61.15	58.79	83.13	116.83	108.96	118.59	77.69
Merged-chr17-7169968-3	chr17	7169871	7170071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-144.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	247.53	257.06	325.16	273.09	330.96	371.58	283.67	395.95	323.55	357.5	432.64	226.81
Merged-chr4-132768203-3	chr4	132768106	132768306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-154.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	94.49	103.13	75.3	86.47	118.64	105.99	50.82	63.95	113.69	121.51	135.17	72.99
Merged-chr7-139233907-3	chr7	139233790	139233990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-14592.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	44.01	36.47	17.68	35.39	45.82	45.78	35.21	46.07	40.12	28.12	54.27	16.92
Merged-chr18-77796873-3	chr18	77796775	77796975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-485.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	23.42	18.36	47.35	18.1	32.32	37.32	28.57	36.76	39.53	51.21	35.17	20.68
Merged-chr6-125449868-3	chr6	125449747	125449947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44913.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	16.56	14.34	18.25	24.13	16.77	15.68	9.3	24.62	22.62	18.58	33.67	23.81
Merged-chr8-91070061-3	chr8	91069969	91070169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	12.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	57.34	66.15	56.48	65.96	60.14	83.72	40.52	72.08	110.34	103.94	117.58	52.32
Merged-chr5-24100536-3	chr5	24100451	24100651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026448)	promoter-TSS (NM_026448)	-39.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	55.72	58.1	58.76	66.36	41.32	46.41	32.55	37.51	81.82	100.92	118.59	54.82
Merged-chrX-134308079-3	chrX	134307956	134308156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145924)	promoter-TSS (NM_145924)	-28.0	NM_145924	102920.0	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	72.28	78.73	74.73	69.18	69.96	95.01	60.12	87.25	92.25	76.32	132.66	52.32
Merged-chr11-100704333-3	chr11	100704208	100704408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-37.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	42.8	51.31	45.64	52.29	60.55	72.12	46.84	46.46	63.92	69.29	60.8	59.83
Merged-chr4-128993160-3	chr4	128993052	128993252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033966)	promoter-TSS (NM_001033966)	-72.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	130.02	123.25	143.76	141.57	160.78	160.86	113.93	139.37	182.33	184.77	146.22	112.78
Merged-chr4-45011725-3	chr4	45011625	45011825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163284, exon 1 of 2)	5' UTR (NM_001163284, exon 1 of 2)	687.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	38.36	43.26	50.2	27.35	45.0	57.38	20.93	42.98	82.41	58.24	78.39	30.39
Merged-chrX-20961647-3	chrX	20961575	20961775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027445)	promoter-TSS (NR_027445)	-1.0	NR_027445	320742.0	Mm.391227	NR_027445		A230072C01Rik	-	RIKEN cDNA A230072C01 gene	ncRNA	41.99	42.01	41.07	35.8	24.14	50.8	26.24	38.5	60.38	45.69	48.74	36.97
Merged-chr2-103606789-1	chr2	103606689	103606889	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40479.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.44	5.79	3.42	1.21	16.36	12.23	3.65	3.14	6.49	13.05	6.53	4.7
Merged-chr15-39957836-3	chr15	39957745	39957945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4804.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	55.72	57.85	63.32	103.77	64.64	81.53	66.77	96.08	73.17	58.75	109.54	53.26
Merged-chr19-12573442-3	chr19	12573326	12573526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-84.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	117.1	117.97	101.54	123.88	126.0	149.57	81.71	111.62	129.03	129.54	188.43	83.33
Merged-chr13-81711097-3	chr13	81711045	81711245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028372)	promoter-TSS (NM_028372)	-132.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	94.08	95.83	111.81	134.74	114.55	87.17	149.14	121.29	103.85	145.61	145.22	88.97
Merged-chr1-172310064-5	chr1	172309966	172310166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2301.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	17.36	15.59	14.26	20.51	14.32	10.98	16.61	8.66	15.93	20.08	13.57	12.53
Merged-chr13-21468570-3	chr13	21468470	21468670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025719)	promoter-TSS (NM_025719)	-69.0	NM_025719	66707.0	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	60.17	45.28	72.45	74.41	70.37	63.34	67.43	82.18	69.43	46.19	128.13	48.24
Merged-chr2-181497662-2	chr2	181497560	181497760	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111899, intron 1 of 5)	intron (NR_111899, intron 1 of 5)	518.0	NM_001291204	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	19.79	18.86	18.83	14.88	22.09	27.28	29.9	20.55	18.88	10.04	29.14	10.02
Merged-chr12-87147605-3	chr12	87147508	87147708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-99.0	NM_001252556	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	148.19	158.71	160.3	199.09	189.41	199.75	162.43	190.94	177.22	186.78	238.68	122.17
Merged-chr6-100381281-3	chr6	100381183	100381383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93925.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	41.99	38.23	49.63	44.64	40.09	34.49	31.56	58.04	61.56	52.72	49.24	25.69
Merged-chr11-8535055-3	chr11	8534971	8535171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 10 of 30)	intron (NM_001083587, intron 10 of 30)	129464.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	22.21	16.1	27.38	19.31	19.64	24.46	14.28	24.39	37.76	30.63	52.26	35.09
Merged-chr8-104534959-3	chr8	104534849	104535049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	249.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	43.21	29.93	32.52	20.51	32.73	75.88	35.54	37.96	53.5	59.75	55.27	23.49
Merged-chr11-101467633-3	chr11	101467531	101467731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-544.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	54.11	50.81	51.34	66.77	83.05	73.06	41.19	67.26	67.27	47.2	59.29	32.58
Merged-chr19-47936592-3	chr19	47936499	47936699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3G|LINE|L1	-1113.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	27.46	27.17	35.37	26.55	23.32	17.87	13.62	23.5	24.78	20.59	28.64	20.99
Merged-chr9-83575565-3	chr9	83575448	83575648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	27210.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	26.65	18.11	30.23	30.97	36.82	33.24	48.5	59.38	25.37	22.59	46.73	34.46
Merged-chr7-28376510-3	chr7	28376398	28376598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011756)	TTS (NM_011756)	2730.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	74.3	66.15	79.86	90.49	84.68	74.0	102.97	94.51	118.01	118.5	175.87	75.81
Merged-chr14-103487152-3	chr14	103487062	103487262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26179.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	62.59	68.16	79.29	96.93	72.82	69.61	96.33	100.63	104.83	87.87	104.52	51.69
Merged-chr11-111096812-3	chr11	111096718	111096918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30654.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	68.65	43.51	80.43	60.73	80.59	58.64	59.46	67.01	90.08	87.87	72.86	68.29
Merged-chr5-110269913-3	chr5	110269831	110270031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163538)	promoter-TSS (NM_001163538)	-32.0	NM_001163538	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	123.16	124.76	137.48	163.29	151.37	156.47	123.24	133.65	146.53	127.03	120.6	76.75
Merged-chr5-3596613-3	chr5	3596538	3596738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172991)	promoter-TSS (NM_172991)	-91.0	NM_172991	269623.0	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	20.59	23.14	18.83	14.48	24.96	28.85	14.95	31.85	35.6	41.67	54.27	29.13
Merged-chr17-94834920-3	chr17	94834809	94835009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-110.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	19.38	14.09	35.37	35.8	27.0	20.38	29.56	34.93	25.18	33.64	41.71	24.75
Merged-chr14-19419343-3	chr14	19419216	19419416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	183271.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	31.5	18.61	16.54	18.5	41.73	23.52	34.55	31.26	38.55	39.16	39.7	45.42
Merged-chr11-96065353-3	chr11	96065221	96065421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	43.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	62.18	50.05	44.5	48.26	61.37	57.38	37.2	48.14	54.88	64.77	68.84	40.72
Merged-chr9-65581127-3	chr9	65581030	65581230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1043.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	55.72	53.83	49.06	44.24	58.09	53.62	36.21	53.47	78.87	82.85	83.91	54.82
Merged-chr9-21029591-3	chr9	21029484	21029684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010493)	TTS (NM_010493)	211.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	33.11	32.2	10.27	25.74	31.91	40.14	16.61	23.19	21.44	28.12	26.63	14.1
Merged-chr14-25460325-3	chr14	25460208	25460408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	CpG	1123.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	31.5	42.01	26.81	22.12	40.5	44.53	24.91	29.69	38.94	31.63	42.71	20.05
Merged-chr12-8519671-3	chr12	8519557	8519757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19648.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	90.45	74.45	148.32	129.91	117.0	113.51	109.62	175.77	172.89	100.42	218.58	103.69
Merged-chr15-101244158-3	chr15	101244094	101244294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19008.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	68.65	57.85	99.83	71.59	95.32	99.4	81.71	88.85	72.77	74.31	95.47	56.07
Merged-chr4-137993406-3	chr4	137993303	137993503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172703)	promoter-TSS (NM_172703)	-53.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	55.72	49.8	47.35	49.07	49.91	50.8	40.86	37.93	75.13	109.96	69.34	57.01
Merged-chr15-81586108-3	chr15	81585998	81586198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-116.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	20.19	28.93	17.68	21.72	23.73	20.07	20.26	21.64	34.42	20.59	29.14	22.87
Merged-chr5-3355604-3	chr5	3355514	3355714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	11721.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	21.0	17.36	24.53	28.96	38.05	38.88	37.54	26.47	32.26	43.68	35.17	24.12
Merged-chr14-50955712-1	chr14	50955612	50955812	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-429.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.03	19.28	26.61	31.15	21.3
Merged-chr11-115163268-3	chr11	115163180	115163380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-61.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	172.82	177.33	164.29	152.43	180.01	223.58	128.88	155.94	251.56	210.88	283.9	132.51
Merged-chr19-4302418-3	chr19	4302309	4302509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3813.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	57.34	47.54	69.03	72.4	55.64	54.88	69.09	64.43	65.5	58.75	69.85	52.32
Merged-chr3-27449631-3	chr3	27449522	27449722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	78271.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	46.84	49.8	65.6	53.09	55.64	67.42	56.14	101.89	35.99	27.62	59.29	28.19
Merged-chr6-48410082-3	chr6	48409948	48410148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362145, intron 9 of 15)	intron (NM_001362145, intron 9 of 15)	14462.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	48.86	38.23	57.62	87.28	58.5	47.98	62.45	85.07	48.78	49.21	83.41	50.44
Merged-chr19-46961873-3	chr19	46961744	46961944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	CpG	507.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	26.65	27.17	25.1	24.94	24.55	33.87	28.57	31.6	32.85	23.1	29.65	18.17
Merged-chr6-129098046-3	chr6	129097939	129098139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	2864.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	14.54	15.34	25.1	18.5	38.46	23.83	17.94	30.22	37.96	44.19	24.12	32.89
Merged-chr4-150730435-3	chr4	150730342	150730542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78268.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	21.8	21.13	17.11	30.16	18.41	21.01	21.59	27.76	30.49	34.65	32.66	18.48
Merged-chr7-68129236-3	chr7	68129131	68129331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135002.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	68.65	66.4	55.33	64.75	65.46	106.61	68.1	81.9	107.2	126.53	132.66	57.01
Merged-chr6-38871181-3	chr6	38871006	38871206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	5084.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	26.25	19.37	19.4	30.16	18.82	23.83	21.26	21.59	30.29	23.1	33.16	22.87
Merged-chr17-84119387-3	chr17	84119269	84119469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40709.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	23.82	14.59	21.68	23.33	31.5	20.07	16.61	22.49	26.16	21.59	34.17	16.92
Merged-chr11-98400314-3	chr11	98400195	98400395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033537, exon 1 of 8)	exon (NM_001033537, exon 1 of 8)	195.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	43.21	39.99	21.68	22.12	37.23	52.68	13.29	23.83	48.98	30.63	33.16	21.93
Merged-chr11-22666187-3	chr11	22666067	22666267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153884.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	167.17	175.57	155.73	188.23	203.73	253.68	156.78	176.3	212.03	197.83	230.14	100.87
Merged-chr4-8700376-3	chr4	8700285	8700485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	9979.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	29.48	31.94	42.21	56.71	30.27	33.55	27.24	48.11	32.26	30.63	46.23	37.28
Merged-chr1-153803151-3	chr1	153803051	153803251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40990.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	15.34	10.06	5.7	1.61	15.14	28.85	13.95	5.69	24.78	16.07	13.06	7.21
Merged-chr4-109457003-3	chr4	109456899	109457099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013876, exon 2 of 3)	exon (NM_013876, exon 2 of 3)	19506.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	31.5	18.36	23.39	20.91	17.18	18.19	13.95	33.98	28.52	21.59	31.15	15.35
Merged-chr12-28635928-3	chr12	28635807	28636007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	46.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	57.34	43.01	50.2	63.95	66.27	99.4	30.56	45.53	92.64	82.85	75.87	56.39
Merged-chr1-121567979-3	chr1	121567868	121568068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	12.0	NM_025860	66942.0	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	62.18	64.39	70.17	66.36	86.32	72.75	41.19	71.44	55.27	80.84	92.96	52.0
Merged-chr16-22265996-3	chr16	22265894	22266094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	11.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	135.27	125.76	118.08	127.5	137.05	150.83	87.36	113.61	173.68	200.84	184.41	114.97
Merged-chr16-78490425-3	chr16	78490312	78490512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69904.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	35.53	35.47	41.64	23.33	51.55	59.27	31.56	47.36	42.09	32.64	47.74	24.75
Merged-chr3-38423583-3	chr3	38423488	38423688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61228.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	31.09	32.7	43.35	46.66	21.68	39.2	35.54	34.43	37.76	27.62	45.22	22.87
Merged-chr16-92058254-3	chr16	92058177	92058377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017391)	promoter-TSS (NM_017391)	-45.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	99.33	77.72	31.95	55.91	76.5	89.05	37.2	48.67	90.67	119.0	75.87	68.29
Merged-chr7-118243801-3	chr7	118243712	118243912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	-95.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	181.3	166.51	160.87	175.36	222.55	273.75	173.39	196.23	229.93	276.66	292.44	145.98
Merged-chr11-49243907-3	chr11	49243788	49243988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-303.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	195.03	175.57	226.47	204.32	187.37	198.81	130.21	170.94	256.87	275.66	279.38	163.84
Merged-chr13-37963610-3	chr13	37963521	37963721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30587.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	44.01	31.94	26.81	20.51	59.73	50.49	22.26	30.81	55.86	43.68	46.23	30.07
Merged-chr9-119418244-1	chr9	119418144	119418344	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	16066.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	1.21	1.26	1.14	1.61	6.95	3.76	2.66	4.71	30.29	37.16	36.68	18.48
Merged-chr11-69016002-3	chr11	69015918	69016118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013256, exon 1 of 23)	5' UTR (NM_001013256, exon 1 of 23)	107.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	116.29	85.52	87.28	56.31	92.46	120.41	64.11	70.18	92.84	97.41	112.56	53.26
Merged-chrX-102037043-3	chrX	102036964	102037164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	34243.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	51.69	50.31	59.9	81.65	58.91	68.67	72.41	83.24	43.47	45.19	56.78	30.07
Merged-chr14-52305099-3	chr14	52305030	52305230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019721)	promoter-TSS (NM_019721)	-6.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	38.76	39.99	35.94	52.69	49.5	62.71	36.21	51.87	65.1	56.74	82.41	46.68
Merged-chr18-36726667-3	chr18	36726534	36726734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009841, exon 1 of 2)	5' UTR (NM_009841, exon 1 of 2)	181.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	90.45	75.21	104.39	79.64	111.28	91.25	92.01	88.88	101.29	101.93	168.83	88.03
Merged-chr11-67604605-3	chr11	67604513	67604713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	8058.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	31.09	17.36	31.95	49.87	20.46	24.15	29.9	39.11	38.16	22.59	40.2	22.87
Merged-chr5-3420320-3	chr5	3420210	3420410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76417.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	35.53	26.16	33.66	35.39	27.82	30.73	29.56	37.15	38.55	32.64	60.8	35.71
Merged-chr6-97479419-3	chr6	97479316	97479516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	LTR16A|LTR|ERVL	8404.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	113.87	130.04	149.46	153.64	138.28	204.14	144.83	179.27	189.8	228.46	316.06	143.16
Merged-chr12-80793062-3	chr12	80792954	80793154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	2522.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	38.76	39.74	43.93	28.15	49.91	66.79	13.95	25.51	59.2	63.27	42.71	20.99
Merged-chr3-108856124-3	chr3	108856038	108856238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15636.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	69.45	64.39	67.88	64.35	54.82	72.12	44.18	36.34	96.18	80.84	82.91	34.46
Merged-chr16-30395312-3	chr16	30395203	30395403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-6773.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	26.65	21.13	29.66	20.91	33.55	35.75	22.26	36.93	28.52	25.11	45.73	16.6
Merged-chr10-128412790-3	chr10	128412693	128412893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	1177.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	23.82	25.66	43.35	24.94	30.68	33.87	16.94	41.89	37.37	33.14	48.74	39.47
Merged-chr6-85029124-3	chr6	85029026	85029226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	40387.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	22.21	13.08	30.23	20.91	21.68	31.04	24.58	34.82	14.16	17.07	25.63	20.36
Merged-chrX-140529273-3	chrX	140529156	140529356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13412.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	41.19	18.61	47.35	70.79	46.64	34.81	39.86	57.87	39.14	22.59	70.35	28.51
Merged-chr7-44405789-3	chr7	44405678	44405878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21652.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	99.74	101.37	95.84	111.81	140.32	160.55	117.59	118.77	128.04	156.66	167.83	93.04
Merged-chr5-72259539-3	chr5	72259434	72259634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 10 of 22)	intron (NR_003966, intron 10 of 22)	56191.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	21.0	13.83	32.52	27.35	42.55	31.36	30.56	46.15	42.29	20.59	38.19	28.51
Merged-chr7-49468012-3	chr7	49467938	49468138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	168797.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	79.55	82.25	94.7	103.37	122.32	108.5	99.98	108.34	107.2	95.9	117.58	71.11
Merged-chr1-172347606-3	chr1	172347497	172347697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	6387.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	54.11	24.15	38.79	30.97	47.46	47.35	36.54	47.64	48.78	50.21	60.8	29.13
Merged-chr8-40851121-1	chr8	40851021	40851221	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11246.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.42	1.76	2.28	1.61	0.41	2.82	3.99	3.11	51.53	46.7	54.27	26.31
Merged-chr3-139074858-4	chr3	139074730	139074930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	CpG	371.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	19.38	16.1	13.69	12.87	20.86	20.7	20.93	15.7	24.78	18.08	31.15	16.6
Merged-chr11-6626042-3	chr11	6625943	6626143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130457)	promoter-TSS (NM_001130457)	24.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	50.47	49.55	47.92	41.43	54.41	71.18	43.18	52.91	69.23	68.29	83.41	38.53
Merged-chr5-123945456-2	chr5	123945351	123945551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001134767, intron 5 of 12)	intron (NM_001134767, intron 5 of 12)	14762.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	27.46	34.46	41.07	35.8	30.27	26.97	22.92	22.43	1.38	0.0	0.0	0.0
Merged-chr5-148493129-3	chr5	148493044	148493244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58529.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	46.84	40.24	70.74	36.6	47.87	51.11	42.85	37.51	37.57	28.62	34.67	27.88
Merged-chr4-56802412-3	chr4	56802272	56802472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-41.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	46.84	46.53	38.22	45.05	51.14	63.97	61.12	49.43	58.02	71.3	60.3	51.69
Merged-chr11-104550617-3	chr11	104550526	104550726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285990)	promoter-TSS (NM_001285990)	-6.0	NM_001285988	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	85.6	103.63	39.93	45.45	57.68	91.25	26.57	32.27	80.84	124.02	45.22	59.83
Merged-chr12-25207973-3	chr12	25207869	25208069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78795.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	55.72	42.26	60.47	49.07	50.32	50.17	40.86	75.03	47.01	58.75	46.73	37.91
Merged-chr1-89552640-3	chr1	89552560	89552760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97849.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	29.48	38.74	69.03	29.36	58.09	84.98	70.75	75.06	57.83	50.21	98.49	36.34
Merged-chr8-117343183-3	chr8	117343083	117343283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5987.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	49.26	34.46	51.34	59.93	55.23	55.5	62.45	78.34	61.37	47.2	73.86	51.06
Merged-chr3-146404627-3	chr3	146404561	146404761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253768)	promoter-TSS (NM_001253768)	19.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	76.72	48.8	45.64	51.48	88.37	89.68	76.07	80.33	94.02	66.78	143.71	41.35
Merged-chr9-45405359-3	chr9	45405259	45405459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-718.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	28.27	23.14	23.96	22.12	29.46	31.98	30.89	34.07	30.09	34.14	35.68	22.87
Merged-chr5-72263157-3	chr5	72263072	72263272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59829.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	31.5	28.42	62.75	39.82	22.09	28.85	14.62	47.94	44.25	40.17	35.17	21.62
Merged-chr2-90673486-3	chr2	90673386	90673586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3729.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	46.44	29.43	41.64	40.22	56.87	68.05	43.18	41.19	57.43	51.21	64.32	29.76
Merged-chr4-59808619-3	chr4	59808519	59808719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	B3A|SINE|B2	2969.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	20.19	20.63	33.09	15.28	18.41	33.24	23.58	33.0	34.03	23.1	39.19	12.53
Merged-chr5-92375546-3	chr5	92375443	92375643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12247.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	17.36	16.6	23.39	31.37	31.5	39.82	23.25	28.18	38.16	32.13	33.16	19.42
Merged-chr1-144318516-3	chr1	144318404	144318604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69400.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	34.32	25.15	42.21	24.13	53.18	37.0	51.49	71.97	70.41	47.7	55.78	47.62
Merged-chr2-154790898-3	chr2	154790775	154790975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139511)	promoter-TSS (NM_001139511)	-235.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	169.59	144.13	150.6	159.27	165.28	188.14	111.28	131.36	226.39	226.95	238.18	116.22
Merged-chr11-85525193-3	chr11	85525085	85525285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172021.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	76.72	69.92	64.46	88.08	125.19	133.58	111.94	118.85	126.27	100.92	85.92	66.41
Merged-chr10-81134442-3	chr10	81134340	81134540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1831.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	96.51	97.34	118.08	92.51	97.78	120.73	82.05	101.22	156.17	136.57	165.82	75.5
Merged-chr13-112735244-3	chr13	112735134	112735334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-65543.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	24.23	23.64	26.24	25.34	58.09	69.3	35.87	39.62	24.19	14.56	28.64	15.98
Merged-chr2-150786704-3	chr2	150786618	150786818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153781)	promoter-TSS (NM_153781)	-78.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	65.41	46.53	85.57	113.02	70.77	78.71	81.38	96.65	99.72	78.83	121.6	58.89
Merged-chr19-37550469-3	chr19	37550372	37550572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175353)	promoter-TSS (NM_175353)	54.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	30.28	24.4	15.4	22.12	31.09	24.46	27.57	15.98	20.46	26.11	26.13	18.17
Merged-chr3-79089252-3	chr3	79089151	79089351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 11 of 23)	intron (NM_001099624, intron 11 of 23)	55636.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	52.49	79.23	50.2	61.54	66.27	94.07	44.51	70.4	44.25	54.23	74.37	40.72
Merged-chr8-104110938-3	chr8	104110837	104111037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5064.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	103.78	100.61	135.77	166.51	115.78	138.29	140.84	159.0	149.88	122.51	157.28	98.37
Merged-chr7-25756251-3	chr7	25756148	25756348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190974)	TTS (NM_001190974)	-1489.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	115.89	110.92	129.49	117.44	123.14	158.04	107.29	102.39	135.12	126.03	162.3	76.44
Merged-chr5-65863606-3	chr5	65863500	65863700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	31.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	23.82	14.84	20.54	32.58	37.64	31.36	14.95	22.96	22.03	22.59	26.63	17.54
Merged-chr15-102722192-3	chr15	102722074	102722274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026192)	promoter-TSS (NM_026192)	4.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	106.2	95.58	88.42	120.26	116.59	136.09	82.71	134.27	142.8	147.12	173.86	87.71
Merged-chr4-53270097-3	chr4	53269936	53270136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	196.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	39.98	24.15	38.79	39.01	81.0	50.49	58.46	64.79	61.17	42.18	61.81	46.05
Merged-chr9-18473673-3	chr9	18473579	18473779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028935)	promoter-TSS (NM_028935)	-34.0	NM_028160	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	52.09	34.21	53.05	54.3	78.14	63.34	45.51	91.09	75.72	56.24	106.02	54.2
Merged-chr2-51022669-2	chr2	51022576	51022776	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	112992.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.81	4.53	7.99	2.41	29.05	58.32	25.91	28.65	35.4	37.16	41.2	18.17
Merged-chr7-80232736-3	chr7	80232640	80232840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011870)	promoter-TSS (NM_011870)	65.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	186.96	129.79	186.54	156.86	168.55	198.81	140.51	160.6	259.23	274.15	254.76	118.1
Merged-chr4-35130820-3	chr4	35130729	35130929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-21226.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	168.79	151.67	191.1	171.34	170.6	233.93	183.03	163.43	164.63	220.42	178.38	97.11
Merged-chr7-27357590-5	chr7	27357478	27357678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199236, intron 18 of 18)	intron (NM_001199236, intron 18 of 18)	-1570.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	23.42	20.37	26.24	33.38	24.96	26.34	31.56	17.27	25.37	24.1	39.7	24.75
Merged-chr7-90130233-3	chr7	90130126	90130326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	13.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	207.55	235.68	196.81	215.58	236.46	297.58	223.88	228.65	277.13	390.14	361.29	198.3
Merged-chr11-32559035-3	chr11	32558942	32559142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	25776.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	65.82	59.36	83.29	76.82	74.46	90.0	63.44	76.63	78.28	90.38	102.51	57.64
Merged-chr1-173451867-3	chr1	173451777	173451977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	31273.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	56.13	45.28	86.14	95.72	76.5	59.27	68.76	103.26	52.71	34.65	92.96	45.11
Merged-chr8-36613978-3	chr8	36613876	36614076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	-33.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	38.36	49.05	66.17	78.03	72.82	76.51	69.76	99.11	65.3	60.25	108.03	36.34
Merged-chr5-43187519-3	chr5	43187404	43187604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	ORR1F|LTR|ERVL-MaLR	-45959.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	49.26	27.67	60.47	45.85	40.91	48.29	82.38	77.08	107.98	90.88	128.64	52.0
Merged-chr11-119085579-3	chr11	119085516	119085716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	621.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	26.25	27.17	28.52	21.32	13.91	32.61	16.61	15.36	31.67	44.69	27.13	26.0
Merged-chr1-54837867-3	chr1	54837764	54837964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	88523.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	49.67	31.44	55.33	71.59	57.68	49.23	45.51	66.11	35.6	47.2	63.31	36.34
Merged-chr12-80833728-3	chr12	80833599	80833799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	43167.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	41.99	27.17	49.06	30.16	45.41	38.88	21.92	32.22	38.35	36.15	48.24	28.19
Merged-chr15-82354344-3	chr15	82354249	82354449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025987)	promoter-TSS (NM_025987)	-58.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	116.7	110.67	122.65	110.6	159.96	152.71	96.66	144.37	166.2	140.59	223.6	78.32
Merged-chr10-57836246-1	chr10	57836146	57836346	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	41702.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.04	2.52	6.85	15.28	11.86	17.56	35.54	34.96	5.9	5.52	8.04	7.52
Merged-chr4-121215107-3	chr4	121215021	121215221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346660)	promoter-TSS (NM_001346660)	-37.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	84.8	83.26	82.72	65.16	81.0	88.43	41.52	50.78	140.44	104.94	107.53	86.46
Merged-chr11-106675467-3	chr11	106675346	106675546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39835.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	131.64	97.09	99.83	108.59	146.87	143.62	86.36	84.34	99.13	102.93	100.5	51.06
Merged-chr11-43433716-3	chr11	43433633	43433833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148673)	promoter-TSS (NM_148673)	2.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	60.57	48.8	63.89	59.93	56.46	74.0	38.2	48.39	72.97	79.33	47.74	38.22
Merged-chr17-6778482-3	chr17	6778371	6778571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	4309.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	87.62	86.53	76.44	88.89	66.68	96.89	54.14	64.07	83.99	73.31	92.96	50.12
Merged-chr4-141871169-3	chr4	141871055	141871255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3765.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	117.1	96.84	134.06	99.34	95.73	112.57	51.15	86.13	130.21	134.06	174.36	109.02
Merged-chr11-104425273-3	chr11	104425164	104425364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081045, exon 2 of 14)	5' UTR (NM_001081045, exon 2 of 14)	17027.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	104.99	72.19	104.96	86.47	88.37	108.18	64.44	91.91	90.48	76.82	122.1	58.89
Merged-chr13-98912809-3	chr13	98912733	98912933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	13551.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	22.61	34.96	36.51	16.89	23.32	24.77	9.63	24.22	23.8	33.64	22.61	12.53
Merged-chr17-27910353-3	chr17	27910245	27910445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	1039.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	71.07	61.88	90.7	94.11	55.23	75.88	62.45	60.08	65.3	43.18	63.31	38.85
Merged-chr18-36365206-3	chr18	36365123	36365323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	16599.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	26.25	20.88	18.83	44.64	31.09	28.22	46.84	51.98	27.93	27.11	54.27	26.63
Merged-chr7-126799816-2	chr7	126799698	126799898	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-544.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	52.09	31.44	38.22	36.6	49.09	53.62	24.58	36.34	60.58	51.72	52.76	38.85
Merged-chr9-96631551-3	chr9	96631447	96631647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-44.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	57.34	50.81	83.29	67.97	61.77	77.45	57.47	69.08	93.23	73.81	123.61	47.93
Merged-chr19-4148571-3	chr19	4148464	4148664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-99.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	57.34	58.35	60.47	69.58	69.96	71.81	52.48	53.13	83.4	86.86	94.47	62.97
Merged-chr14-30870380-2	chr14	30870281	30870481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-8876.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	10.9	6.04	21.11	28.56	14.32	6.27	16.61	28.01	3.54	3.51	8.04	2.51
Merged-chr3-16184677-3	chr3	16184558	16184758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1493.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	49.26	33.2	39.93	39.82	48.27	58.32	27.24	45.48	63.33	49.21	50.25	32.89
Merged-chr9-21237646-3	chr9	21237526	21237726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	1706.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	30.28	30.43	18.83	27.35	39.68	41.08	38.86	28.79	42.48	21.59	35.68	30.39
Merged-chr18-77714499-3	chr18	77714398	77714598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	314.0	NR_027978	67640.0	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	17.77	13.33	20.54	20.91	19.64	23.83	14.95	27.53	20.85	37.66	46.73	18.17
Merged-chr1-131097839-3	chr1	131097745	131097945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-2.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	106.6	129.54	107.82	109.4	128.05	210.72	92.68	93.53	158.92	164.19	218.58	81.45
Merged-chr10-81496465-3	chr10	81496362	81496562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-99.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	191.4	207.26	256.14	243.73	222.96	293.5	185.35	240.95	264.74	278.17	328.62	201.74
Merged-chr7-100242551-3	chr7	100242450	100242650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	14943.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	23.82	19.62	23.96	41.43	20.46	28.22	20.93	38.41	25.96	11.05	18.09	13.16
Merged-chr9-62980879-3	chr9	62980742	62980942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019663)	promoter-TSS (NM_019663)	37.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	46.44	51.31	54.19	33.78	45.82	63.97	38.53	38.13	67.27	58.75	57.28	49.18
Merged-chr6-137386532-3	chr6	137386430	137386630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-24191.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	54.51	57.35	103.25	69.18	53.59	59.58	53.48	85.15	93.62	73.31	133.16	57.33
Merged-chr8-13159178-3	chr8	13159077	13159277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	16.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	81.97	58.35	55.33	45.45	63.41	98.78	40.19	70.96	100.31	84.86	74.87	36.65
Merged-chr11-60707872-3	chr11	60707781	60707981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008502, intron 11 of 20)	intron (NM_008502, intron 11 of 20)	8191.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	21.0	29.18	30.8	37.81	34.77	37.32	23.92	33.84	27.73	26.11	38.69	20.05
Merged-chr9-50533505-3	chr9	50533418	50533618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133217, exon 12 of 12)	exon (NM_133217, exon 12 of 12)	-4877.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	23.02	26.41	26.24	33.78	20.05	27.59	13.29	29.05	34.03	23.6	32.66	24.43
Merged-chr7-97027062-3	chr7	97026958	97027158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-54693.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	80.76	64.14	71.88	64.75	72.41	95.64	92.01	73.15	76.51	92.89	69.85	71.42
Merged-chr8-70761076-3	chr8	70760988	70761188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-167.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	228.14	259.83	248.15	276.71	283.51	311.38	223.55	272.95	327.88	362.52	359.28	258.13
Merged-chr12-21389669-1	chr12	21389569	21389769	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011739)	TTS (NM_011739)	-16037.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.81	2.01	4.56	2.41	4.09	0.63	0.0	2.61	31.08	24.6	36.18	33.52
Merged-chr6-85937055-3	chr6	85936949	85937149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21078.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	27.86	30.18	28.52	39.82	41.32	51.74	55.14	35.27	45.24	42.18	43.21	35.71
Merged-chr5-68735368-3	chr5	68735261	68735461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	606348.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	50.88	54.83	78.15	92.51	71.18	70.87	103.64	110.27	129.81	111.47	187.43	97.74
Merged-chr6-6217157-3	chr6	6217050	6217250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	23.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	24.63	12.07	19.4	27.75	52.77	74.94	52.15	90.42	32.85	30.13	58.29	34.15
Merged-chr18-65490540-3	chr18	65490428	65490628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59531.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	24.23	22.13	30.23	30.97	23.73	34.49	24.91	35.92	27.93	16.07	28.14	18.17
Merged-chr11-119875873-3	chr11	119875781	119875981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-6408.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	37.15	30.94	51.91	51.08	49.5	45.47	54.48	57.5	43.86	28.62	43.21	43.86
Merged-chr16-55733971-3	chr16	55733853	55734053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88185.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	18.17	15.85	22.82	20.11	33.96	38.26	47.5	61.85	47.01	43.18	39.7	20.68
Merged-chr3-116861866-3	chr3	116861774	116861974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009146, intron 1 of 16)	intron (NM_009146, intron 1 of 16)	194.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	28.27	28.17	29.66	20.91	20.86	34.81	25.58	24.98	32.45	54.73	35.17	25.06
Merged-chr9-119102448-3	chr9	119102366	119102566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-12.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	64.61	46.03	49.63	30.16	47.05	64.6	25.91	46.51	74.74	84.86	92.96	49.81
Merged-chr9-22307725-3	chr9	22307609	22307809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145612)	promoter-TSS (NM_145612)	-71.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	88.84	96.34	100.97	82.05	106.37	134.84	72.75	120.03	117.62	112.47	148.73	81.45
Merged-chr10-76345381-3	chr10	76345280	76345480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-89.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	77.12	62.38	63.32	66.36	84.28	79.33	44.84	91.49	124.11	104.44	131.65	64.22
Merged-chr1-34716645-2	chr1	34716554	34716754	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80444.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	3.63	3.52	2.28	9.65	36.0	42.02	43.85	62.8	39.93	35.65	70.85	40.1
Merged-chr3-123267976-3	chr3	123267892	123268092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 1 of 22)	CpG	496.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	39.57	25.91	31.38	33.38	42.14	28.54	55.8	52.49	39.14	50.21	41.71	41.35
Merged-chr13-4756586-3	chr13	4756480	4756680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-147416.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	50.07	46.03	25.67	39.01	56.46	53.62	44.18	58.46	65.89	61.26	64.82	43.54
Merged-chr5-43355382-3	chr5	43355264	43355464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120010.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	85.6	73.95	70.74	104.57	87.14	88.43	91.68	114.7	149.48	155.15	197.48	81.76
Merged-chr11-100701489-2	chr11	100701390	100701590	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030150, intron 6 of 12)	intron (NM_030150, intron 6 of 12)	2781.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	2.42	0.0	1.14	0.4	31.09	35.43	24.58	13.63	32.65	27.62	33.67	17.23
Merged-chr6-24166954-2	chr6	24166856	24167056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 1 of 14)	MIR|SINE|MIR	1136.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	22.21	24.4	21.11	20.11	48.68	52.68	33.88	37.01	2.75	1.0	2.51	1.88
Merged-chr9-47530190-3	chr9	47530080	47530280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	10.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	84.8	65.65	74.73	51.08	78.55	83.41	57.8	60.98	119.39	122.51	117.58	66.41
Merged-chr6-85137551-5	chr6	85137460	85137660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011467, exon 1 of 3)	exon (NM_011467, exon 1 of 3)	204.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	14.13	14.59	18.25	10.86	20.86	17.87	17.27	11.64	16.52	26.11	26.63	32.27
Merged-chr8-122377040-1	chr8	122376940	122377140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001029993, intron 1 of 18)	CpG	424.0	NM_001029993	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	12.52	15.09	10.84	4.83	22.91	14.74	3.32	6.59	18.69	14.56	16.08	8.14
Merged-chr12-79841528-3	chr12	79841433	79841633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83200.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	49.26	39.49	53.62	44.24	66.68	62.09	38.86	66.08	51.14	71.8	75.87	58.27
Merged-chr6-147091496-3	chr6	147091398	147091598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081237, exon 1 of 3)	5' UTR (NM_001081237, exon 1 of 3)	423.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	35.94	24.4	31.38	38.61	33.14	29.79	32.55	37.88	44.45	58.24	63.82	37.28
Merged-chr3-138958762-3	chr3	138958660	138958860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 7 of 13)	intron (NM_001356388, intron 7 of 13)	116441.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	31.9	20.37	49.63	48.67	24.55	33.87	29.56	45.11	30.88	39.16	40.7	21.3
Merged-chr4-59626172-4	chr4	59626090	59626290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153158)	promoter-TSS (NM_153158)	-21.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	29.88	13.08	23.96	11.26	33.55	32.61	15.94	29.33	44.06	37.16	43.72	35.4
Merged-chr8-8649780-3	chr8	8649694	8649894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10979.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	15.75	11.82	9.13	17.29	36.82	44.21	54.14	62.66	16.52	18.58	27.13	16.29
Merged-chr18-5806510-3	chr18	5806420	5806620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	213873.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	64.2	78.73	81.0	82.45	125.19	158.04	100.98	96.08	105.23	98.41	119.09	44.8
Merged-chr9-64790848-3	chr9	64790755	64790955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20156.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	39.17	26.91	55.33	47.46	76.5	70.24	36.87	55.37	57.43	54.73	81.9	37.59
Merged-chr16-91451975-3	chr16	91451878	91452078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13126.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	50.47	30.43	51.34	59.53	33.55	32.61	21.59	56.89	37.57	25.61	57.28	27.57
Merged-chr12-112808914-3	chr12	112808804	112809004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145450)	promoter-TSS (NM_145450)	-71.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	36.34	39.24	38.79	35.8	43.77	52.99	31.22	67.37	75.53	69.79	83.41	53.26
Merged-chr11-60777414-3	chr11	60777321	60777521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	-56.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	73.89	62.88	74.16	64.75	115.37	139.54	93.01	105.17	139.85	168.71	146.72	78.94
Merged-chr11-8709746-3	chr11	8709638	8709838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-45203.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	31.9	34.96	22.25	30.57	42.96	53.31	21.26	36.45	66.48	49.71	49.24	37.91
Merged-chr1-170282626-3	chr1	170282527	170282727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012009, intron 2 of 3)	intron (NM_012009, intron 2 of 3)	5309.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	33.52	33.7	87.28	77.22	49.5	31.04	39.2	78.95	24.39	24.1	53.26	30.07
Merged-chr14-52120354-3	chr14	52120250	52120450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168515, intron 4 of 24)	intron (NM_001168515, intron 4 of 24)	9447.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	35.53	27.42	36.51	54.3	23.73	33.55	33.55	44.41	28.91	25.61	32.16	19.74
Merged-chr19-29461444-3	chr19	29461324	29461524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	50505.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	54.51	53.32	75.3	35.8	79.78	111.0	89.02	64.91	84.58	77.32	67.84	35.09
Merged-chr5-123394635-3	chr5	123394530	123394730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-168.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	172.02	160.22	167.71	160.48	159.96	208.21	150.47	126.28	166.99	181.26	193.96	104.32
Merged-chr17-69417399-3	chr17	69417315	69417515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026848, exon 1 of 1)	non-coding (NR_026848, exon 1 of 1)	968.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	96.51	108.41	87.28	143.99	104.73	138.29	111.94	129.08	145.35	114.98	129.64	82.08
Merged-chr7-64872991-3	chr7	64872894	64873094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	46.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	75.11	90.8	98.12	105.78	109.23	114.77	106.96	100.09	108.57	99.92	132.15	77.06
Merged-chr15-59728325-3	chr15	59728225	59728425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66634.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	211.59	228.89	240.16	222.82	237.28	270.93	233.85	212.02	289.92	318.33	343.2	191.72
Merged-chr1-106317134-3	chr1	106317020	106317220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 3 of 16)	intron (NM_133821, intron 3 of 16)	145251.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	35.53	21.88	70.74	71.99	43.77	42.65	46.84	63.62	47.01	39.16	57.79	28.82
Merged-chr4-139161226-3	chr4	139161125	139161325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	19430.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	42.4	17.1	29.66	37.81	36.41	36.06	15.28	24.79	49.96	28.12	56.78	21.3
Merged-chr7-44553968-3	chr7	44553858	44554058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	7.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	62.99	54.08	46.21	67.97	62.59	68.05	38.86	54.17	96.57	80.84	96.98	51.06
Merged-chr7-19749781-3	chr7	19749676	19749876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-203.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	111.04	129.54	132.35	134.74	111.28	148.63	82.05	77.64	130.01	149.13	166.82	75.81
Merged-chr3-108146183-3	chr3	108146122	108146322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-70.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	52.49	45.53	43.35	34.99	60.14	55.82	36.21	47.05	55.47	46.19	66.33	34.77
Merged-chr6-87541138-3	chr6	87541049	87541249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7890.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	133.66	81.5	145.47	96.93	114.96	106.61	122.9	151.96	83.79	101.43	106.02	76.44
Merged-chr15-25267165-3	chr15	25267068	25267268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146596.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	33.92	16.6	53.62	37.0	42.96	36.06	41.19	66.25	26.75	23.1	37.18	14.41
Merged-chr17-70755125-3	chr17	70755023	70755223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	91654.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	16.96	20.37	3.99	21.32	18.82	23.52	11.96	27.22	27.14	27.62	36.68	20.99
Merged-chr8-56301455-3	chr8	56301343	56301543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	6891.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	42.4	41.5	47.35	61.54	54.41	51.11	22.92	18.98	62.15	57.74	66.33	32.27
Merged-chr16-46010466-3	chr16	46010358	46010558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-45.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	161.11	151.92	158.59	182.6	225.42	248.35	203.95	259.74	245.27	248.04	355.26	167.91
Merged-chrUn_JH584304-6413-1	chrUn_JH584304	6313	6513	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53276.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.29	21.09	21.1	32.58
Merged-chr11-79993082-3	chr11	79992985	79993185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163018)	promoter-TSS (NM_001163018)	-21.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	59.36	59.61	60.47	63.15	90.41	81.53	45.18	72.11	101.49	94.9	83.41	54.51
Merged-chr15-78257936-3	chr15	78257809	78258009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13098.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	48.05	29.68	39.93	26.14	43.36	62.71	43.18	52.6	53.7	45.19	44.72	33.83
Merged-chr2-94273404-3	chr2	94273292	94273492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11993.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	48.05	39.24	51.34	26.95	43.36	63.66	51.49	61.65	83.2	110.97	86.93	65.79
Merged-chr8-104641731-3	chr8	104641648	104641848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026753)	promoter-TSS (NM_026753)	-20.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	33.52	24.65	43.93	36.2	50.32	60.52	32.22	48.73	47.01	64.27	80.4	35.4
Merged-chr7-25316713-3	chr7	25316616	25316816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-448.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	134.06	146.14	166.57	174.55	152.6	162.12	176.05	167.92	164.04	147.12	197.48	133.45
Merged-chr13-55321924-3	chr13	55321727	55321927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025596)	promoter-TSS (NM_025596)	153.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	9.69	21.63	19.4	16.09	16.77	19.13	19.93	14.47	14.75	24.6	19.09	17.86
Merged-chr6-136684245-1	chr6	136684145	136684345	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22352.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.44	3.52	3.99	2.41	2.86	2.82	1.66	3.67	10.82	6.03	26.13	12.84
Merged-chr1-136683960-3	chr1	136683852	136684052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	323.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	52.9	33.2	49.06	56.71	93.68	78.08	93.34	92.75	98.74	76.82	99.49	48.87
Merged-chr2-84798296-3	chr2	84798205	84798405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-523.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	37.55	51.31	28.52	24.94	29.46	64.6	11.96	24.28	48.19	78.33	54.77	25.69
Merged-chr13-93251951-3	chr13	93251844	93252044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-51813.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	28.67	15.85	48.49	32.58	46.64	38.57	49.16	67.04	29.5	29.12	49.75	30.39
Merged-chr8-31168800-3	chr8	31168697	31168897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-73.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	104.99	114.45	114.09	111.01	153.82	145.5	111.28	151.43	144.17	157.16	171.35	122.49
Merged-chr2-68861201-5	chr2	68861049	68861249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-292.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	50.07	50.05	47.35	59.53	49.5	46.41	70.42	52.51	53.89	59.75	72.86	55.45
Merged-chr14-45583841-3	chr14	45583730	45583930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	40120.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	43.21	31.44	34.23	30.16	36.82	44.84	24.58	38.36	37.96	34.65	40.2	26.63
Merged-chr18-34410956-2	chr18	34410849	34411049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016927, intron 2 of 14)	B3|SINE|B2	1526.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	42.4	24.15	50.2	23.33	39.68	54.56	22.26	42.45	0.79	0.5	1.0	0.31
Merged-chr5-108448877-3	chr5	108448738	108448938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172883, exon 1 of 10)	exon (NM_172883, exon 1 of 10)	262.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	19.38	25.66	25.67	19.31	16.36	20.38	21.26	25.26	15.54	18.58	27.64	10.65
Merged-chr8-110217854-3	chr8	110217749	110217949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-111.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	174.04	141.86	142.61	175.76	192.69	210.09	134.2	170.41	244.68	179.75	290.94	138.15
Merged-chr10-43221425-3	chr10	43221328	43221528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-58.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	69.86	71.69	84.43	71.59	99.0	98.78	57.8	106.85	123.13	102.43	146.22	68.29
Merged-chrX-93832231-3	chrX	93832129	93832329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145630)	promoter-TSS (NM_145630)	-134.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	42.8	45.78	39.93	60.33	69.14	51.11	45.84	86.66	58.81	38.66	99.99	40.1
Merged-chr1-23383372-3	chr1	23383266	23383466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-191.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	228.14	221.34	279.52	253.79	230.73	258.07	235.18	322.6	299.75	249.55	431.13	189.84
Merged-chr5-35582973-3	chr5	35582875	35583075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357020)	promoter-TSS (NM_001357020)	-59.0	NM_001357020	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	50.88	49.55	49.63	26.14	62.59	64.91	45.84	57.17	86.35	76.82	107.53	50.75
Merged-chr7-55918505-3	chr7	55918419	55918619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 23 of 30)	intron (NM_011370, intron 23 of 30)	43974.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	40.78	34.71	63.89	59.12	69.55	72.12	48.16	78.08	128.63	124.02	155.77	75.81
Merged-chr3-89350057-3	chr3	89349955	89350155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009614)	promoter-TSS (NM_009614)	-27.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	31.5	27.17	37.08	33.78	59.32	49.86	34.21	38.41	47.6	43.68	56.78	32.89
Merged-chr2-91084657-3	chr2	91084573	91084773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12005.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	56.94	37.73	74.73	56.31	71.59	70.24	63.78	71.64	71.59	64.27	110.55	79.26
Merged-chr4-129788897-3	chr4	129788811	129789011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31568.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	40.38	29.18	52.48	45.45	33.14	48.29	32.55	36.93	67.46	56.74	69.34	39.47
Merged-chr4-132040254-4	chr4	132040174	132040374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	8804.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	41.59	17.1	32.52	30.16	46.64	41.39	40.19	44.13	34.81	48.7	31.66	27.57
Merged-chr11-77982556-3	chr11	77982424	77982624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-292.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	167.98	150.41	110.67	91.7	156.28	214.48	110.95	112.79	242.71	227.96	241.19	136.9
Merged-chr18-57740349-3	chr18	57740242	57740442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	39653.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	27.86	20.12	27.95	59.53	33.55	26.65	52.48	60.39	46.22	44.69	86.93	34.77
Merged-chr19-46863738-3	chr19	46863644	46863844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98607.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	19.38	14.84	33.09	18.5	61.77	77.14	63.44	57.87	35.21	56.24	60.3	20.05
Merged-chr15-53556297-3	chr15	53556200	53556400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57979.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	41.59	38.48	30.8	47.46	29.05	28.85	21.59	34.82	37.37	35.65	40.2	20.05
Merged-chr9-45955246-3	chr9	45955169	45955369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172257)	promoter-TSS (NM_172257)	-20.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	47.65	36.47	45.64	51.48	50.32	54.88	35.87	46.21	66.68	51.21	63.31	35.4
Merged-chr5-114380602-4	chr5	114380561	114380761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026145)	promoter-TSS (NM_026145)	41.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	18.17	18.36	13.12	19.71	14.32	14.11	25.91	11.58	14.36	20.08	17.59	15.35
Merged-chr6-117879480-4	chr6	117879334	117879534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	16553.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	53.3	57.35	38.22	66.77	63.82	78.08	51.49	48.62	72.97	110.46	82.41	74.56
Merged-chr15-3979576-3	chr15	3979469	3979669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134099)	promoter-TSS (NM_134099)	4.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	98.53	96.08	121.51	111.81	123.55	135.78	97.66	156.14	144.17	154.15	242.2	90.53
Merged-chr18-50083121-3	chr18	50083032	50083232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-29470.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	99.74	100.36	128.92	87.68	106.78	157.1	129.55	128.36	142.6	163.18	155.27	78.0
Merged-chr6-92214901-3	chr6	92214798	92214998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	-87.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	108.62	54.58	88.99	72.8	81.41	113.51	78.72	84.87	116.83	102.43	121.1	70.17
Merged-chr4-133353592-3	chr4	133353483	133353683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14268.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	16.56	15.34	19.4	6.03	22.5	42.02	14.28	20.02	33.24	28.12	37.69	20.36
Merged-chr9-124424190-3	chr9	124424084	124424284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	397.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	86.41	89.04	111.81	82.45	103.5	116.65	57.47	100.49	142.99	135.57	174.86	83.96
Merged-chr5-125388729-1	chr5	125388629	125388829	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019639, intron 1 of 1)	PB1D9|SINE|Alu	1288.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	52.49	78.73	54.19	29.36	39.27	61.46	23.92	25.71	65.89	83.85	45.22	32.58
Merged-chr19-44422328-4	chr19	44422234	44422434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14625.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	7.67	7.04	7.99	17.29	16.36	46.72	57.13	50.69	18.1	19.08	28.14	16.29
Merged-chr15-103310620-3	chr15	103310538	103310738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-200.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	116.7	126.02	102.68	61.94	112.5	169.02	108.29	98.64	135.52	146.61	141.7	58.27
Merged-chr3-38112754-3	chr3	38112662	38112862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95357.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	31.5	21.13	37.08	24.53	25.36	29.16	24.91	49.74	40.91	28.12	21.1	27.88
Merged-chr10-116582972-3	chr10	116582854	116583054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1443.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	32.71	27.42	20.54	22.52	29.46	39.82	27.9	25.96	52.71	32.13	43.21	22.87
Merged-chr2-76610877-3	chr2	76610778	76610978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37116.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	59.76	41.5	61.04	61.94	69.55	73.69	78.06	102.76	80.25	76.82	83.41	58.27
Merged-chrX-10714894-3	chrX	10714794	10714994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2471.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	69.05	47.79	64.46	43.44	89.59	98.78	55.14	82.77	112.9	83.85	98.99	52.63
Merged-chr5-20941390-3	chr5	20941271	20941471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	-9618.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	73.09	73.95	81.58	81.65	70.77	84.35	74.07	104.08	110.93	79.33	137.68	52.0
Merged-chr12-111432303-3	chr12	111432208	111432408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028807)	TTS (NM_028807)	-10353.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	49.26	31.94	32.52	26.55	46.23	57.07	31.89	39.93	54.88	25.61	36.18	24.43
Merged-chr7-100431340-3	chr7	100431212	100431412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 22 of 32)	intron (NM_001017985, intron 22 of 32)	-41679.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	37.96	27.92	41.07	52.29	53.59	29.16	39.2	45.42	106.41	82.85	134.67	65.16
Merged-chr7-35742184-1	chr7	35742084	35742284	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12270.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	29.48	17.86	37.65	24.13	20.46	44.84	41.85	35.38	0.79	3.01	0.5	0.0
Merged-chr11-73024664-3	chr11	73024551	73024751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	5643.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	91.66	70.43	121.51	113.42	117.0	105.67	92.34	129.17	86.74	82.35	103.01	58.27
Merged-chr4-59548704-3	chr4	59548623	59548823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144904, intron 1 of 14)	CpG	641.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	30.28	41.25	29.09	27.35	26.18	37.0	43.51	24.64	48.19	52.22	52.26	40.1
Merged-chr9-83548328-3	chr9	83548222	83548422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172507)	promoter-TSS (NM_172507)	-16.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	61.78	53.07	36.51	64.75	70.37	90.62	61.45	60.5	94.02	98.91	118.59	61.09
Merged-chr13-52602991-3	chr13	52602875	52603075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6093.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	78.34	46.03	97.55	74.41	77.32	104.11	138.85	147.0	76.71	75.82	121.6	52.63
Merged-chr5-151057166-3	chr5	151057071	151057271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 7 of 13)	intron (NR_153382, intron 7 of 13)	104564.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	51.69	75.46	73.59	67.57	80.59	79.33	76.07	97.57	90.28	68.79	123.61	50.44
Merged-chr13-3771642-3	chr13	3771546	3771746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32672.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	32.3	24.4	49.06	38.21	15.55	23.52	19.6	16.35	17.31	4.02	14.07	6.89
Merged-chr10-90983223-1	chr10	90983123	90983323	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	99520.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.66	1.32	23.6	10.54	50.75	26.63
Merged-chr13-104817077-3	chr13	104816964	104817164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026072)	promoter-TSS (NM_026072)	-106.0	NM_026075	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	41.19	44.77	58.19	62.74	36.82	42.65	68.76	44.16	42.09	45.19	36.18	33.21
Merged-chr3-127409075-1	chr3	127408975	127409175	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001327939)	promoter-TSS (NM_001327939)	-17.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.4	3.77	3.42	3.62	4.91	4.39	3.65	3.62	69.04	59.75	92.46	42.6
Merged-chr16-36642851-3	chr16	36642740	36642940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23237.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	136.48	126.27	100.4	63.95	163.64	240.82	92.34	82.12	148.7	128.04	141.7	50.75
Merged-chr11-70446882-3	chr11	70446782	70446982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5049.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	75.51	63.39	55.33	50.27	79.37	93.13	47.83	63.17	74.94	71.3	89.94	47.93
Merged-chr5-148556650-1	chr5	148556550	148556750	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3862.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	2.42	4.28	1.14	5.23	3.68	7.53	5.65	3.28	49.17	42.68	61.3	27.57
Merged-chr14-25459205-3	chr14	25459115	25459315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	30.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	49.26	45.53	45.07	34.99	45.41	45.47	24.91	42.48	30.68	33.64	36.18	30.39
Merged-chr4-53384954-3	chr4	53384835	53385035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55478.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	23.82	27.92	33.66	21.32	45.41	63.03	45.84	41.24	45.83	50.21	46.23	33.52
Merged-chr11-115859738-3	chr11	115859622	115859822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35664.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	56.53	49.55	49.06	37.4	64.23	85.29	34.21	43.68	67.86	45.19	50.25	30.39
Merged-chr15-96699765-3	chr15	96699670	96699870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-42.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	44.01	49.05	23.96	27.35	40.09	48.6	25.58	30.28	55.66	54.73	51.76	26.0
Merged-chr4-149445481-3	chr4	149445379	149445579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9489.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	107.81	113.19	115.23	126.29	110.87	106.93	95.67	121.35	134.93	96.91	164.31	67.98
Merged-chr8-70477013-3	chr8	70476905	70477105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-62.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	80.36	83.26	78.15	69.18	120.69	102.22	56.8	69.9	110.15	136.07	134.16	77.38
Merged-chr6-6578548-3	chr6	6578434	6578634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009169, exon 1 of 3)	exon (NM_009169, exon 1 of 3)	124.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	31.9	58.1	50.2	83.26	42.14	51.43	77.4	50.36	53.89	72.3	72.86	49.18
Merged-chr1-60916354-3	chr1	60916247	60916447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001281976)	TTS (NM_001281976)	7322.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	38.76	22.39	31.38	39.82	27.82	28.85	15.28	31.26	33.63	29.62	34.17	18.48
Merged-chr11-3104932-1	chr11	3104832	3105032	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR4|LTR|ERVK	-19089.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	2.02	0.0	3.42	0.8	4.91	3.76	1.33	0.45	35.6	27.11	29.65	18.17
Merged-chr19-6242474-3	chr19	6242360	6242560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	792.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	89.64	84.76	90.7	82.85	108.41	132.33	51.15	80.41	113.29	116.99	111.05	54.82
Merged-chr6-129236063-3	chr6	129235961	129236161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	1984.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	167.98	114.7	138.62	141.57	151.78	188.46	149.14	178.4	204.56	159.17	220.59	134.08
Merged-chr2-158175208-2	chr2	158175112	158175312	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16796.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	37.15	18.86	46.78	30.57	64.23	54.56	65.11	51.76	54.29	33.64	84.42	49.18
Merged-chr10-99172244-3	chr10	99172120	99172320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	64085.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	59.36	39.24	54.76	98.54	55.23	46.1	90.02	148.43	57.43	39.16	89.44	36.34
Merged-chr19-21895735-3	chr19	21895625	21895825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	117385.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	40.38	35.21	87.28	74.0	54.0	50.8	72.41	79.82	56.06	40.67	77.38	41.35
Merged-chr8-70804114-3	chr8	70804016	70804216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4333.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	15.34	11.57	25.1	17.29	23.73	26.65	21.26	26.05	29.9	26.11	24.12	7.52
Merged-chr3-95930149-3	chr3	95930023	95930223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253758, intron 1 of 4)	CpG	866.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	14.94	15.09	11.98	9.65	17.18	23.52	19.93	15.73	16.33	30.13	22.61	14.41
Merged-chr3-101600418-3	chr3	101600321	101600521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4286.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	37.96	34.46	51.34	49.87	49.5	43.27	33.88	56.8	48.98	40.67	55.78	45.42
Merged-chr12-85541383-3	chr12	85541291	85541491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	53.7	63.13	108.96	91.3	101.05	102.54	79.72	113.75	107.79	115.48	151.25	68.29
Merged-chr1-93635815-3	chr1	93635717	93635917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-90.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	169.59	190.91	236.17	266.26	237.69	242.71	228.87	261.39	244.68	262.1	384.4	178.25
Merged-chr12-81971275-3	chr12	81971151	81971351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018814, exon 20 of 36)	exon (NM_018814, exon 20 of 36)	111221.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	25.84	26.66	16.54	34.59	22.5	17.87	28.9	20.94	18.69	28.62	18.09	21.3
Merged-chr16-52061342-3	chr16	52061236	52061436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29787.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	74.3	84.51	107.25	51.08	96.96	132.64	106.63	128.16	128.24	84.35	117.58	59.52
Merged-chr7-97251826-3	chr7	97251740	97251940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	74124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	32.3	38.99	65.6	86.07	77.32	79.65	49.49	75.39	60.58	54.73	92.96	44.48
Merged-chr7-141460844-3	chr7	141460757	141460957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-237.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	73.09	55.08	72.45	66.36	74.46	99.4	67.76	93.81	91.46	75.32	128.64	58.58
Merged-chr12-70453083-3	chr12	70452994	70453194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	-60.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	77.12	60.62	66.17	59.12	88.37	81.53	58.46	85.15	105.23	93.39	105.52	66.41
Merged-chr16-92415887-3	chr16	92415788	92415988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-15810.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	90.45	87.78	114.66	150.42	100.23	140.17	159.11	129.79	90.28	98.91	136.68	74.87
Merged-chr10-44069313-3	chr10	44069222	44069422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64476.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	28.67	15.59	27.95	34.99	25.36	33.87	23.58	32.5	36.78	27.62	40.7	31.95
Merged-chr11-6292560-3	chr11	6292447	6292647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252288)	promoter-TSS (NM_001252288)	-11.0	NM_001252288	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	23.42	25.66	20.54	16.49	22.91	25.4	18.93	32.1	47.99	26.61	50.25	36.65
Merged-chr5-99379747-3	chr5	99379635	99379835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126808.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	110.24	99.35	96.41	54.3	114.55	183.13	110.28	122.55	140.44	140.09	153.76	65.16
Merged-chr9-7250821-3	chr9	7250736	7250936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21678.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	27.46	14.09	36.51	57.92	39.68	29.48	39.2	49.51	30.88	34.14	46.73	20.36
Merged-chr15-66845545-3	chr15	66845420	66845620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-13691.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	113.87	135.32	130.63	123.07	123.55	165.88	116.92	113.8	128.04	113.98	155.27	66.73
Merged-chr18-25241815-3	chr18	25241711	25241911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	72791.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	27.86	22.64	41.07	42.23	28.23	27.59	30.23	47.72	25.77	29.62	44.22	21.93
Merged-chr15-36179692-3	chr15	36179579	36179779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_012031, exon 1 of 19)	5' UTR (NM_012031, exon 1 of 19)	149.0	NM_012031	26942.0	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	27.86	24.65	27.38	24.13	33.14	39.82	18.27	43.37	35.8	30.13	50.25	28.19
Merged-chr7-6362751-3	chr7	6362630	6362830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-578.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	240.26	243.23	222.48	224.03	344.06	335.21	224.88	259.52	430.16	415.74	497.46	220.85
Merged-chr16-91648204-3	chr16	91648093	91648293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019973, intron 1 of 4)	CpG-5863	369.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	21.0	21.38	17.68	17.7	10.64	21.32	19.27	10.91	18.88	23.1	20.6	20.05
Merged-chr11-63132941-3	chr11	63132796	63132996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302260)	promoter-TSS (NM_001302260)	93.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	13.33	9.81	8.56	23.73	17.18	46.72	29.9	37.37	47.99	34.65	71.86	32.27
Merged-chrX-105065020-3	chrX	105064922	105065122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015467, intron 4 of 4)	intron (NR_015467, intron 4 of 4)	5102.0	NR_015467	71445.0	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	37.15	55.08	51.34	68.78	59.32	62.71	68.1	101.8	88.12	53.22	97.98	43.54
Merged-chr11-48787947-3	chr11	48787842	48788042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12418.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	91.66	70.93	103.25	76.02	90.0	116.34	45.18	83.27	134.73	96.4	122.61	61.09
Merged-chr17-32364500-3	chr17	32364385	32364585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13908.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	46.44	40.75	69.6	35.39	49.5	61.77	27.9	35.58	71.4	64.77	60.8	30.07
Merged-chr8-22136737-2	chr8	22136641	22136841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011848, intron 11 of 15)	RLTR44B|LTR|ERVK	-11674.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	41.19	48.8	59.33	42.23	71.59	74.0	53.15	26.64	0.79	0.0	2.01	1.25
Merged-chr2-36216677-3	chr2	36216584	36216784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-13742.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	28.27	31.19	45.64	51.48	45.82	33.55	44.84	49.88	66.68	47.2	77.38	34.77
Merged-chr4-145300374-3	chr4	145300301	145300501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 2 of 12)	intron (NM_009401, intron 2 of 12)	14746.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	35.94	39.74	22.82	6.44	23.32	95.01	24.91	21.14	46.42	25.11	26.63	12.53
Merged-chr5-64780984-3	chr5	64780876	64781076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22547.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	59.76	41.0	50.77	46.66	83.05	37.0	35.87	57.73	41.7	54.73	60.8	32.27
Merged-chr3-95315758-1	chr3	95315658	95315858	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	568.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	18.17	11.32	31.38	9.65	11.45	27.91	11.96	11.55	17.7	18.08	24.62	14.41
Merged-chr9-75037658-3	chr9	75037561	75037761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021548)	promoter-TSS (NM_021548)	47.0	NR_152135	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	42.8	43.51	32.52	41.43	46.64	62.71	34.88	48.81	57.83	62.26	56.78	24.12
Merged-chr1-123919825-3	chr1	123919725	123919925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	125734.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	85.6	70.68	72.45	63.15	86.73	119.78	110.61	116.69	124.31	88.37	117.08	45.74
Merged-chr13-110602042-3	chr13	110601950	110602150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207006.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	131.64	108.91	136.91	129.91	155.05	144.24	109.62	164.27	175.45	149.13	141.2	87.71
Merged-chr4-126321731-3	chr4	126321623	126321823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133883)	promoter-TSS (NM_133883)	-20.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	52.09	43.51	63.32	55.5	40.5	67.42	27.24	49.77	69.82	93.39	73.86	44.8
Merged-chr9-98601700-3	chr9	98601588	98601788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-9.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	35.94	27.67	54.76	54.7	58.5	57.38	41.52	75.95	59.4	33.64	60.3	35.71
Merged-chr10-95291352-3	chr10	95291282	95291482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32327.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	31.09	32.2	43.35	67.17	34.77	31.98	26.57	36.25	46.62	37.16	56.78	17.23
Merged-chr12-100729199-3	chr12	100729067	100729267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4047.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	31.09	34.21	33.09	37.0	40.5	51.74	35.54	37.07	52.91	38.16	34.17	29.76
Merged-chr6-53571942-3	chr6	53571844	53572044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-1430.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	48.86	35.47	55.9	52.69	44.59	56.76	32.88	55.63	64.91	52.72	74.37	33.52
Merged-chr7-133709158-3	chr7	133709014	133709214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025392)	promoter-TSS (NM_025392)	181.0	NM_009479	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	36.34	36.97	41.07	33.38	37.64	41.39	45.51	30.31	55.07	59.75	48.74	49.5
Merged-chr2-170322254-3	chr2	170322140	170322340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34121.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	25.44	33.7	43.93	26.55	52.77	63.34	51.15	54.45	46.42	39.67	55.78	40.72
Merged-chr17-84273049-3	chr17	84272902	84273102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-85055.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	68.65	45.28	52.48	61.13	97.78	83.1	70.42	75.08	57.63	67.78	61.81	33.83
Merged-chr2-166710053-3	chr2	166709961	166710161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	3771.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	44.01	46.03	51.34	40.62	66.27	55.5	46.84	51.95	64.51	56.24	59.29	30.07
Merged-chrX-134601118-3	chrX	134601025	134601225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313717)	promoter-TSS (NM_001313717)	-54.0	NM_001313716	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	94.49	110.42	88.99	81.65	111.28	143.93	74.74	96.17	110.74	101.43	113.06	48.56
Merged-chr4-149155938-3	chr4	149155852	149156052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10130.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	44.82	29.43	54.76	43.84	62.18	75.26	75.07	91.04	60.19	61.26	69.34	34.15
Merged-chr5-64716762-3	chr5	64716643	64716843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86780.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	42.4	31.94	54.19	49.87	38.46	40.14	35.87	45.53	84.18	84.35	73.36	50.12
Merged-chr19-21778336-3	chr19	21778250	21778450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031997)	promoter-TSS (NM_031997)	10.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	152.23	160.73	172.85	205.12	164.05	201.63	163.1	191.24	160.69	147.12	190.44	104.63
Merged-chr3-152886985-1	chr3	152886885	152887085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	95222.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	17.36	16.35	34.8	1.61	4.5	10.98	5.98	2.41	3.74	0.0	0.5	2.82
Merged-chr12-81860918-3	chr12	81860825	81861025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018814, intron 1 of 35)	CpG	895.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	26.25	31.69	34.8	22.93	37.64	33.55	23.25	20.92	35.21	27.11	19.6	24.12
Merged-chr5-140392847-3	chr5	140392704	140392904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3496.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	57.34	59.61	67.31	87.68	47.46	60.52	52.82	59.64	74.15	52.22	76.38	41.98
Merged-chrUn_JH584304-39660-1	chrUn_JH584304	39560	39760	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20029.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	40.12	46.19	38.19	34.77
Merged-chr13-66933014-5	chr13	66932923	66933123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	49.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	81.57	83.0	92.41	100.15	82.23	91.88	123.9	90.42	110.54	137.58	151.25	90.53
Merged-chr3-89785520-3	chr3	89785388	89785588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11879.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	23.02	24.9	34.23	23.73	26.18	32.93	25.58	27.48	26.36	27.11	32.16	33.52
Merged-chr4-107253714-3	chr4	107253618	107253818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355459)	promoter-TSS (NM_001355459)	26.0	NM_001355460	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	248.33	228.64	259.56	240.11	296.19	310.75	249.13	273.9	224.62	288.21	258.78	162.59
Merged-chr6-83659514-2	chr6	83659418	83659618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3402.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	16.56	11.82	38.22	26.55	27.41	9.09	55.8	92.47	7.47	9.04	12.56	8.77
Merged-chr19-8741572-6	chr19	8741476	8741676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019829)	promoter-TSS (NM_019829)	152.0	NM_001167799	56389.0	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	60.57	66.91	47.35	76.02	48.27	68.36	44.18	34.88	58.61	66.78	49.75	48.87
Merged-chr16-50551104-3	chr16	50550992	50551192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 4 of 5)	intron (NR_040379, intron 4 of 5)	22590.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	26.25	17.36	54.19	60.33	35.59	22.89	39.86	69.22	44.06	11.05	39.19	26.31
Merged-chr5-30960342-3	chr5	30960234	30960434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-7.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	103.78	95.58	103.25	105.38	94.09	85.61	45.18	81.93	112.7	109.96	164.31	103.06
Merged-chr2-83725533-1	chr2	83725433	83725633	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1136.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.85	0.5	0.0	1.61	2.86	1.25	8.97	10.85	2.95	2.51	7.54	1.25
Merged-chr2-18767234-3	chr2	18767123	18767323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6361.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	41.59	41.0	37.65	35.39	23.32	37.0	27.24	30.31	37.37	40.67	32.66	28.82
Merged-chr11-117830618-3	chr11	117830526	117830726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4612.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	58.95	55.34	65.03	47.46	57.68	84.98	46.5	52.79	101.88	79.83	89.94	36.97
Merged-chr17-27623536-3	chr17	27623427	27623627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-75.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	39.98	53.07	54.19	34.59	58.5	61.77	39.53	43.07	59.99	84.86	72.36	40.41
Merged-chr5-121386542-3	chr5	121386468	121386668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-953.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	11.71	13.33	17.11	15.69	17.18	15.68	15.61	20.5	20.85	34.14	28.14	16.29
Merged-chr9-119352232-3	chr9	119352126	119352326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5155.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	22.21	18.11	10.27	16.89	21.68	31.36	14.95	14.89	24.19	31.13	40.7	16.92
Merged-chr1-87651612-3	chr1	87651518	87651718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	MTC|LTR|ERVL-MaLR	31306.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	27.86	28.67	45.64	39.01	50.73	30.73	32.22	31.01	47.99	44.19	52.26	34.46
Merged-chr18-64518745-3	chr18	64518645	64518845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2188.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	25.44	15.34	22.25	18.5	38.05	31.98	25.58	35.44	36.58	35.15	49.75	46.68
Merged-chr9-44113600-3	chr9	44113491	44113691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153762)	promoter-TSS (NM_153762)	-540.0	NM_153762	213211.0	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	130.43	107.15	132.92	95.72	148.91	154.28	83.71	99.67	170.73	177.75	139.69	79.26
Merged-chr5-36695833-5	chr5	36695751	36695951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081232, intron 1 of 8)	CpG	170.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	35.53	51.31	39.36	39.01	28.64	49.54	39.86	22.46	52.71	34.65	51.76	39.47
Merged-chr1-24686435-3	chr1	24686338	24686538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 2 of 15)	MIR|SINE|MIR	7520.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	28.67	30.43	45.07	32.98	33.55	40.76	32.22	63.25	34.81	58.24	61.81	40.72
Merged-chr18-62227777-3	chr18	62227696	62227896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47696.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	62.18	49.55	57.05	41.43	39.68	68.67	22.26	31.51	29.31	31.13	37.18	15.35
Merged-chr4-3656444-3	chr4	3656361	3656561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040643)	promoter-TSS (NR_040643)	-45.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	26.65	36.47	26.81	28.56	31.09	33.55	31.89	22.6	46.22	46.7	64.32	29.76
Merged-chr7-25107271-3	chr7	25107164	25107364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 5 of 13)	L1MA6|LINE|L1	-10089.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	21.0	31.19	49.06	21.72	51.96	51.43	26.24	66.14	43.27	51.21	69.85	26.31
Merged-chr13-112660685-3	chr13	112660592	112660792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178746)	promoter-TSS (NM_178746)	-74.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	81.57	80.49	78.72	98.14	101.87	90.62	67.1	121.26	117.82	104.44	166.32	60.77
Merged-chr14-122068098-3	chr14	122067991	122068191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33417.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	37.55	41.75	27.95	19.71	22.5	35.75	13.95	16.57	46.42	29.12	32.16	16.6
Merged-chr6-145340077-3	chr6	145339934	145340134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47591.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	50.47	47.79	47.92	60.33	48.27	63.66	60.46	80.38	71.4	51.72	104.01	64.22
Merged-chr14-62838096-1	chr14	62837996	62838196	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106174)	TTS (NR_106174)	375.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	6.46	17.1	15.97	7.64	12.27	8.78	9.97	10.49	10.23	12.05	14.07	12.84
Merged-chrX-139570286-3	chrX	139570188	139570388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254761, intron 1 of 6)	L2c|LINE|L2	6948.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	20.59	17.86	20.54	26.14	22.5	20.38	29.56	37.49	43.47	57.74	76.88	41.35
Merged-chr11-83045739-3	chr11	83045636	83045836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5203.0	NR_073524	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	63.8	72.94	59.33	44.24	96.14	132.95	50.49	64.63	82.81	101.43	91.95	47.62
Merged-chr9-90269071-3	chr9	90268987	90269187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1682.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	21.0	25.91	18.25	34.19	21.68	34.18	27.57	30.64	39.93	39.67	38.19	19.74
Merged-chr4-86676867-1	chr4	86676767	86676967	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6808.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.62	1.51	0.0	1.61	4.09	1.88	0.0	2.36	21.05	19.58	22.61	16.92
Merged-chr9-22468324-3	chr9	22468216	22468416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	40.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	39.17	39.49	46.21	49.47	39.27	53.93	45.84	48.65	49.17	46.19	71.35	29.45
Merged-chr14-8173162-3	chr14	8173087	8173287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-195.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	346.46	333.78	386.2	380.88	366.56	462.83	381.0	478.4	470.48	467.46	584.39	315.46
Merged-chr7-75848266-3	chr7	75848163	75848363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182782)	promoter-TSS (NM_182782)	-75.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	114.27	93.32	114.66	136.35	124.37	133.27	84.37	168.76	133.35	148.12	212.05	72.05
Merged-chr11-87031048-3	chr11	87030962	87031162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37300.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	36.75	42.26	50.2	44.64	104.32	80.27	48.5	86.72	87.13	60.75	76.38	49.81
Merged-chr19-33589776-3	chr19	33589663	33589863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013770, intron 1 of 10)	intron (NM_001013770, intron 1 of 10)	548.0	NM_001013770	381236.0	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	18.57	20.37	18.25	14.88	15.14	34.49	27.9	19.88	18.69	25.11	27.13	14.72
Merged-chr5-17842254-3	chr5	17842154	17842354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-6358.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	42.4	20.37	32.52	41.83	45.0	45.15	37.87	62.97	36.58	33.14	47.23	26.94
Merged-chr6-122863057-3	chr6	122862950	122863150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6893.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	79.14	72.44	117.51	111.81	123.14	156.47	141.17	150.03	99.92	88.37	105.52	73.93
Merged-chr10-56106829-3	chr10	56106741	56106941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-76.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	69.05	70.68	71.88	82.05	64.64	101.6	58.46	94.68	106.6	98.91	87.93	59.21
Merged-chr2-21179369-3	chr2	21179263	21179463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26002.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	14.13	19.87	22.25	19.71	19.64	12.54	26.57	34.32	21.64	24.6	21.61	15.35
Merged-chr11-77348244-3	chr11	77348127	77348327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-53.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	32.3	40.75	42.21	36.6	47.46	55.82	27.9	34.35	62.74	79.33	67.84	37.91
Merged-chr13-47106011-3	chr13	47105913	47106113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025900, intron 1 of 10)	CpG	208.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	43.21	61.12	35.37	26.55	40.5	57.07	39.2	29.36	98.34	93.89	71.35	41.66
Merged-chr7-67451604-3	chr7	67451503	67451703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78745.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	54.11	57.1	56.48	44.64	50.32	80.9	49.16	44.83	128.24	102.43	141.7	54.51
Merged-chr12-41350024-3	chr12	41349939	41350139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	136018.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	40.38	40.75	66.17	82.85	71.59	68.36	61.78	84.93	86.15	77.83	102.51	50.12
Merged-chr9-57073135-2	chr9	57073037	57073237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110351, intron 1 of 21)	CpG	1097.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	67.84	65.65	58.19	69.58	76.09	81.22	48.83	56.8	74.74	74.81	105.02	54.2
Merged-chr19-10843604-3	chr19	10843491	10843691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	1047.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	13.73	19.87	23.39	14.88	16.36	23.2	16.28	13.91	18.29	15.06	26.13	19.74
Merged-chr5-92509106-3	chr5	92508989	92509189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3432.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	52.9	37.73	55.33	36.6	59.32	80.59	34.88	62.3	73.17	54.23	52.26	30.07
Merged-chr14-34311252-3	chr14	34311152	34311352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	525.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	30.69	32.2	11.98	25.34	29.05	28.85	25.58	28.37	32.26	34.14	40.2	25.37
Merged-chr3-27209913-3	chr3	27209811	27210011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	26907.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	112.26	75.46	135.2	131.92	178.37	185.95	200.3	237.45	204.16	186.78	257.77	175.12
Merged-chr2-167588912-3	chr2	167588806	167589006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43099.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	101.76	88.54	92.41	99.75	81.41	114.77	120.25	127.74	110.15	73.81	105.02	68.92
Merged-chr2-85047885-3	chr2	85047785	85047985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001136081)	TTS (NM_001136081)	-2575.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	211.59	205.25	248.72	245.34	227.05	272.18	210.6	279.17	250.78	285.2	339.68	189.21
Merged-chr8-84872184-3	chr8	84872090	84872290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-68.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	37.96	18.36	31.95	24.94	49.91	23.52	21.26	20.55	51.14	38.16	37.69	34.77
Merged-chr17-36020852-3	chr17	36020752	36020952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008207)	promoter-TSS (NM_008207)	-292.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	27.46	18.36	31.95	20.91	50.73	42.65	30.56	60.56	46.62	51.21	60.8	45.42
Merged-chr17-48409896-3	chr17	48409801	48410001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-81.0	NM_010913	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	259.64	256.81	250.43	228.85	245.46	370.96	194.65	196.35	330.04	383.61	409.02	198.61
Merged-chr11-95843161-3	chr11	95843067	95843267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163464)	promoter-TSS (NM_001163464)	-78.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	102.97	53.58	69.03	61.13	74.46	107.24	74.07	80.02	101.29	105.94	77.88	45.11
Merged-chr1-30873427-1	chr1	30873327	30873527	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10171.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	29.07	33.2	23.96	23.73	36.0	46.72	50.16	40.6	61.76	53.73	52.76	45.11
Merged-chr7-126976117-3	chr7	126976008	126976208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	194.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	46.84	42.01	45.64	32.18	68.73	64.28	31.22	40.88	88.31	74.31	82.91	52.63
Merged-chr1-86154743-3	chr1	86154662	86154862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-18.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	75.91	75.96	79.29	60.33	100.23	93.76	58.13	94.85	108.97	123.52	148.23	79.57
Merged-chr18-65505137-3	chr18	65505016	65505216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	74119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	28.27	33.96	41.07	45.05	38.86	47.98	26.57	34.32	18.49	31.63	34.17	20.36
Merged-chr13-119409300-6	chr13	119409145	119409345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	12.0	NM_001308506	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	23.82	30.94	26.81	25.34	36.82	36.37	40.19	29.61	35.21	45.19	39.19	26.0
Merged-chr10-126919254-3	chr10	126919156	126919356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17885.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	37.15	36.97	42.78	39.01	43.77	64.6	23.58	30.08	59.79	53.22	43.21	22.24
Merged-chr17-78400749-3	chr17	78400665	78400865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001285946, exon 5 of 7)	exon (NM_001285946, exon 5 of 7)	17387.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	24.63	15.34	30.23	32.18	23.73	22.26	26.57	46.82	24.78	29.12	33.67	25.06
Merged-chr2-52895124-3	chr2	52895021	52895221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	37253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	51.28	34.71	45.07	39.42	49.09	71.81	51.15	68.16	76.31	72.3	98.99	51.38
Merged-chr15-82147151-3	chr15	82147053	82147253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033218)	promoter-TSS (NM_033218)	-116.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	165.15	156.45	126.07	178.58	150.55	215.11	130.21	137.55	211.05	239.0	234.16	129.07
Merged-chr10-80939877-3	chr10	80939783	80939983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9792.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	84.8	73.19	53.62	21.72	70.37	95.95	59.13	37.6	101.88	80.84	112.56	38.22
Merged-chr14-75833912-1	chr14	75833812	75834012	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	11052.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	17.77	16.85	8.56	19.31	14.32	21.32	18.27	21.06	23.8	22.59	23.62	17.23
Merged-chr14-77033502-3	chr14	77033402	77033602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172488, intron 4 of 7)	intron (NM_172488, intron 4 of 7)	3115.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	70.26	82.25	75.3	73.6	78.96	104.73	67.76	84.56	122.34	120.0	117.58	55.45
Merged-chr5-110230990-3	chr5	110230876	110231076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-28.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	90.45	87.03	126.07	94.52	119.05	125.12	68.43	104.69	119.19	119.0	147.73	67.35
Merged-chr6-125422488-3	chr6	125422379	125422579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-41975.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	9.29	13.83	17.11	21.72	26.18	16.93	19.6	14.72	26.36	19.58	27.13	17.54
Merged-chr10-99108150-3	chr10	99108051	99108251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	16.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	49.67	60.37	58.76	53.49	53.59	64.91	44.84	58.51	64.12	57.74	78.89	35.4
Merged-chr11-101965771-3	chr11	101965666	101965866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1249.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	69.05	58.86	53.05	40.22	78.96	95.01	59.46	56.75	104.83	102.93	102.51	50.75
Merged-chr14-121381977-3	chr14	121381882	121382082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2752.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	23.82	28.42	26.81	39.01	29.46	18.5	31.89	44.22	25.96	20.59	45.22	29.45
Merged-chr17-73034615-3	chr17	73034517	73034717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73368.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	96.91	83.26	95.84	100.15	133.78	142.05	113.27	139.04	118.6	101.43	183.41	79.26
Merged-chr5-74535595-3	chr5	74535520	74535720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001159574, exon 1 of 16)	5' UTR (NM_001159574, exon 1 of 16)	138.0	NM_001159574	66899.0	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	37.15	49.8	35.94	45.05	36.0	42.96	53.48	39.03	52.71	53.73	40.7	46.99
Merged-chr9-77825492-1	chr9	77825392	77825592	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70957.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.21	0.5	5.7	2.41	5.73	2.51	1.0	5.1	30.29	38.66	30.65	18.17
Merged-chr5-104860141-1	chr5	104860041	104860241	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-73.0	NM_001039231	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	0.0	0.0	0.57	0.0	0.82	0.31	0.0	0.0	28.91	29.12	50.25	16.29
Merged-chr5-140704512-2	chr5	140704404	140704604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-507.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	65.41	69.92	35.37	60.73	71.18	84.04	45.18	36.56	67.27	89.88	74.37	42.6
Merged-chr5-18007241-3	chr5	18007146	18007346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44676.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	54.11	36.72	45.07	104.57	57.27	52.37	65.77	84.76	70.22	48.2	90.45	53.57
Merged-chr2-60210519-3	chr2	60210405	60210605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	569.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	36.75	40.75	45.64	59.53	45.41	48.92	44.18	41.1	63.73	45.69	46.73	41.66
Merged-chr10-10120686-3	chr10	10120569	10120769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219629.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	33.11	18.86	57.62	43.84	58.5	51.11	103.31	131.38	40.32	15.57	44.22	22.87
Merged-chr2-69789620-3	chr2	69789534	69789734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028521)	promoter-TSS (NM_028521)	-103.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	102.56	98.1	153.45	106.18	137.05	119.47	98.99	136.01	156.17	143.1	205.52	84.9
Merged-chr8-104233175-3	chr8	104233094	104233294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	15364.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	27.46	18.61	60.47	67.57	47.05	42.65	67.43	87.9	48.19	33.64	48.74	44.17
Merged-chr3-103968485-3	chr3	103968383	103968583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030676)	promoter-TSS (NR_030676)	-167.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	67.03	63.39	63.32	77.62	67.09	73.06	87.03	62.86	38.35	59.25	60.8	39.78
Merged-chr11-116198899-3	chr11	116198815	116199015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	60.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	73.89	85.52	65.6	72.8	70.77	102.85	57.8	71.27	98.34	107.45	93.96	60.77
Merged-chr16-21596605-3	chr16	21596491	21596691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98074.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	16.96	13.83	18.25	18.5	42.96	35.75	33.88	41.07	25.37	21.09	35.17	11.59
Merged-chr11-69079053-3	chr11	69078949	69079149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5623.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	81.97	70.43	67.88	58.32	85.5	104.73	48.5	76.26	78.48	81.34	133.66	49.81
Merged-chr19-46328399-3	chr19	46328298	46328498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133694, exon 1 of 4)	5' UTR (NM_133694, exon 1 of 4)	214.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	31.9	29.43	37.65	30.16	32.73	50.17	32.55	28.32	32.65	35.65	41.71	28.19
Merged-chr11-53350763-3	chr11	53350655	53350855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-12.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	77.93	95.33	95.84	67.57	75.28	102.85	65.44	69.0	114.08	121.01	112.56	78.94
Merged-chr9-20521447-3	chr9	20521347	20521547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082485)	promoter-TSS (NM_001082485)	-28.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	48.46	36.22	35.94	45.85	35.18	50.49	44.18	59.8	53.11	61.76	68.34	39.16
Merged-chr9-88599623-3	chr9	88599530	88599730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-387.0	NR_040766	320692.0	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	110.24	129.29	109.53	164.1	150.14	188.46	143.5	139.15	167.97	141.09	215.57	106.2
Merged-chr15-59648502-3	chr15	59648345	59648545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-209.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	124.77	143.87	103.25	125.89	177.55	171.52	157.45	135.79	154.6	192.31	168.83	101.19
Merged-chr6-129713801-3	chr6	129713695	129713895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	3337.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	43.61	29.68	51.34	67.17	54.82	29.16	45.18	56.92	49.37	64.77	80.9	44.48
Merged-chr16-36477125-3	chr16	36477038	36477238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21746.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	100.95	69.92	114.09	83.26	87.14	123.23	90.35	109.51	156.96	105.44	169.84	114.97
Merged-chr12-85947373-3	chr12	85947268	85947468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	122418.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	72.68	54.33	96.41	80.84	81.41	84.04	60.79	90.56	119.59	96.91	134.67	78.63
Merged-chr4-15958277-5	chr4	15958126	15958326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 1 of 15)	CpG	259.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	82.37	72.94	83.29	61.94	101.87	112.89	94.67	108.98	159.12	169.21	205.01	105.88
Merged-chr18-56490858-3	chr18	56490764	56490964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360917, intron 11 of 13)	intron (NM_001360917, intron 11 of 13)	-47275.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	65.41	56.09	55.9	59.53	94.91	97.21	90.02	81.87	43.27	54.73	86.43	23.18
Merged-chr18-39835866-3	chr18	39835734	39835934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62337.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	13.73	15.09	22.82	32.18	34.36	32.93	18.93	43.29	41.7	36.15	60.3	27.57
Merged-chr14-75180736-3	chr14	75180619	75180819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44294.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	29.07	25.15	17.11	15.69	26.18	42.33	22.59	22.37	35.01	31.63	29.14	26.0
Merged-chr4-45407782-3	chr4	45407675	45407875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	991.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	39.57	21.13	33.09	26.14	26.18	51.74	50.16	48.9	50.35	59.25	53.77	33.21
Merged-chr5-24586747-3	chr5	24586639	24586839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133913)	promoter-TSS (NM_133913)	-11.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	27.86	17.36	29.09	30.16	30.68	31.36	29.9	29.75	34.22	38.66	64.82	26.94
Merged-chr5-99250027-3	chr5	99249952	99250152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2875.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	27.86	30.69	43.93	36.6	17.18	31.67	46.17	48.17	40.52	34.14	79.39	36.65
Merged-chr11-45851906-3	chr11	45851809	45852009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346760)	promoter-TSS (NM_001346760)	-55.0	NM_001346760	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	48.05	31.69	38.79	32.18	45.41	63.97	34.55	51.65	60.38	55.23	72.86	31.33
Merged-chr7-30957510-3	chr7	30957384	30957584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-681.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	46.84	62.63	41.64	49.07	41.73	63.34	63.11	40.54	52.52	62.26	56.78	35.71
Merged-chr9-107602302-3	chr9	107602211	107602411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042779, intron 9 of 19)	intron (NM_001042779, intron 9 of 19)	3091.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	49.26	26.41	37.65	43.04	28.23	32.61	19.6	42.73	51.14	49.71	29.65	23.18
Merged-chr4-124708687-3	chr4	124708576	124708776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010213)	TTS (NM_010213)	-6185.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	55.32	47.54	57.62	20.91	75.68	78.71	43.85	47.69	80.45	80.84	55.27	29.13
Merged-chr12-21417715-3	chr12	21417606	21417806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011739)	promoter-TSS (NM_011739)	-270.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	134.46	114.45	123.79	157.66	166.91	194.1	136.52	201.76	188.43	171.22	235.66	105.57
Merged-chr4-3626845-3	chr4	3626748	3626948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-29658.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	71.88	74.7	78.72	84.06	90.0	120.1	68.76	74.8	109.56	100.92	127.63	77.69
Merged-chr2-50494241-3	chr2	50494152	50494352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139227.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	24.23	26.66	39.36	52.69	34.77	21.32	22.92	29.5	16.92	7.03	41.71	20.68
Merged-chr17-10319807-3	chr17	10319693	10319893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	-126.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	140.52	127.78	98.69	93.71	122.73	176.86	84.37	84.2	198.85	177.24	157.28	89.28
Merged-chr4-132808282-3	chr4	132808204	132808404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11940.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	45.63	38.99	54.76	49.87	50.73	50.8	22.92	46.46	54.48	65.78	49.24	40.41
Merged-chr2-119034820-3	chr2	119034729	119034929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173450)	promoter-TSS (NM_173450)	39.0	NM_173450	271842.0	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	61.78	49.05	48.49	71.19	64.23	69.93	32.88	54.67	80.84	62.76	55.27	43.86
Merged-chr16-50779588-3	chr16	50779490	50779690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3819.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	20.59	14.34	13.69	19.31	32.73	49.54	22.26	38.24	49.57	54.23	89.44	36.34
Merged-chr10-66953435-3	chr10	66953342	66953542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-33058.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	39.98	36.72	35.94	23.33	27.82	52.37	18.6	31.68	38.35	35.65	26.13	21.3
Merged-chr15-3270639-3	chr15	3270544	3270744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-123.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	103.78	80.74	77.58	115.43	99.41	110.69	109.62	105.73	110.74	91.38	113.06	71.11
Merged-chr13-75845999-3	chr13	75845907	75846107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6121.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	90.05	87.53	121.51	130.71	88.37	135.46	96.0	114.14	65.3	58.24	80.9	34.15
Merged-chr13-26792045-2	chr13	26791942	26792142	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21877.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	6.46	4.02	7.99	17.7	5.73	11.29	4.65	16.57	20.85	24.1	37.69	14.41
Merged-chr4-139616854-3	chr4	139616727	139616927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-6067.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	32.3	18.61	15.97	14.08	29.05	20.38	16.28	22.91	20.06	30.13	31.15	18.48
Merged-chr4-102625160-3	chr4	102625059	102625259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35316.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	156.27	177.08	236.74	190.24	170.19	205.7	186.35	178.4	189.41	209.88	305.01	126.87
Merged-chr9-110657810-3	chr9	110657713	110657913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	1310.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	86.82	79.99	103.25	76.82	83.87	80.59	41.19	83.78	101.88	73.81	118.08	54.2
Merged-chr7-48998841-3	chr7	48998707	48998907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39734.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	25.04	13.58	23.96	34.59	32.32	31.98	23.58	57.08	41.89	33.64	80.4	20.36
Merged-chr2-102672133-1	chr2	102672033	102672233	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	MTC|LTR|ERVL-MaLR	13444.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.06	6.29	7.99	8.04	57.68	49.23	64.77	55.18	3.15	5.52	3.01	6.27
Merged-chr5-139345277-3	chr5	139345176	139345376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197980)	promoter-TSS (NM_197980)	-110.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	44.82	46.78	50.77	36.6	47.05	90.62	42.19	51.53	64.51	61.26	76.88	35.4
Merged-chr12-111691422-2	chr12	111691325	111691525	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13320.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.85	4.78	19.4	0.4	26.18	21.64	27.57	34.99	18.1	16.07	41.71	20.36
Merged-chr7-121074587-3	chr7	121074479	121074679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-49.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	86.82	96.34	74.73	74.81	102.28	106.3	81.05	70.79	115.85	103.43	122.61	62.34
Merged-chr11-16978477-3	chr11	16978376	16978576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27066.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	34.32	25.4	25.1	36.6	32.73	32.61	31.56	40.6	41.11	31.63	45.73	17.23
Merged-chr11-76494670-3	chr11	76494570	76494770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-175.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	21.4	21.88	20.54	28.15	29.86	26.97	23.25	26.05	24.78	31.13	28.14	13.47
Merged-chr4-130800727-3	chr4	130800634	130800834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8197.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	56.13	37.23	55.9	66.77	49.5	60.52	52.82	82.71	81.82	61.26	115.07	56.07
Merged-chr5-142909603-2	chr5	142909514	142909714	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2860.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	28.67	26.41	38.22	32.58	40.5	34.18	20.93	25.49	39.34	40.67	49.24	34.77
Merged-chr8-95888475-3	chr8	95888365	95888565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-100.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	60.57	57.6	66.74	53.89	65.46	74.94	51.15	66.79	65.5	53.73	96.98	47.62
Merged-chr2-152112109-3	chr2	152111999	152112199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029688)	TTS (NM_029688)	6575.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	29.48	28.67	34.23	25.74	31.09	48.29	12.95	34.01	43.47	47.7	55.78	39.16
Merged-chr1-180393257-3	chr1	180393137	180393337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-62688.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	38.36	27.67	35.94	37.4	33.14	37.32	30.89	53.58	45.04	31.63	52.76	34.46
Merged-chr2-93214395-3	chr2	93214290	93214490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	26842.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	71.47	86.27	95.27	37.4	37.64	100.34	40.86	28.57	105.03	113.48	117.58	38.22
Merged-chr9-99074659-3	chr9	99074571	99074771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 8 of 23)	B4A|SINE|B4	-38981.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	22.61	12.83	38.22	29.36	21.68	24.15	30.56	35.92	28.52	16.07	28.64	19.42
Merged-chr8-94037136-3	chr8	94037022	94037222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	-76.0	NM_177767	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	201.9	175.06	207.65	175.76	203.73	239.26	185.35	204.87	218.91	210.38	222.1	144.73
Merged-chr2-118388504-3	chr2	118388402	118388602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	-115.0	NM_001355383	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	220.07	199.71	209.93	209.95	247.51	306.05	166.75	214.85	235.04	226.45	258.28	140.34
Merged-chr19-47220420-1	chr19	47220320	47220520	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021360, intron 1 of 5)	(CACAT)n|Simple_repeat|Simple_repeat	-8423.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	1.62	1.01	0.0	0.0	0.82	0.94	3.32	0.0	15.54	11.05	16.08	3.76
Merged-chr1-172499853-3	chr1	172499739	172499939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	-407.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	18.57	29.93	24.53	13.27	27.41	29.79	13.29	16.18	37.17	44.19	46.23	26.0
Merged-chr7-141392158-3	chr7	141392055	141392255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	-5.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	73.49	46.28	77.58	59.12	85.5	101.28	60.12	63.67	124.11	111.47	124.11	68.92
Merged-chr11-3153873-3	chr11	3153752	3153952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 13 of 32)	intron (NM_030207, intron 13 of 32)	29831.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	62.18	62.88	54.19	34.59	106.78	97.21	90.02	101.58	32.85	36.65	62.81	23.49
Merged-chr10-111996620-3	chr10	111996525	111996725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	639.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	41.99	39.74	18.25	29.36	27.82	27.59	22.26	38.13	64.91	60.75	66.83	30.07
Merged-chr1-36073370-3	chr1	36073271	36073471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	MLT1A1|LTR|ERVL-MaLR	4971.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	23.42	31.19	33.09	17.29	34.77	59.89	49.83	39.5	46.03	46.7	51.76	12.22
Merged-chr1-149940443-3	chr1	149940374	149940574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-18035.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	51.28	46.78	55.33	72.4	84.28	75.57	62.12	76.82	83.0	84.86	70.35	54.2
Merged-chr11-97362268-3	chr11	97362175	97362375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138657)	promoter-TSS (NM_138657)	-276.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	65.41	56.59	57.62	36.6	81.41	99.72	42.19	65.24	121.75	86.36	104.01	53.57
Merged-chr15-83171905-3	chr15	83171802	83172002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	CpG	306.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	67.84	48.54	67.88	42.23	84.28	99.72	61.12	72.59	121.75	110.97	114.06	61.4
Merged-chr3-109254125-3	chr3	109254025	109254225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86558.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	32.71	22.39	35.94	24.53	35.59	16.93	17.94	19.57	46.81	33.14	28.14	28.82
Merged-chr7-139388912-3	chr7	139388828	139389028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-181.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	270.14	265.11	278.38	331.01	307.65	393.85	263.74	301.46	388.85	427.29	582.38	227.74
Merged-chr2-153350866-6	chr2	153350776	153350976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	4737.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	27.05	14.84	21.11	12.47	35.18	30.1	22.92	23.13	32.26	28.12	27.13	19.42
Merged-chr11-84870147-3	chr11	84870056	84870256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131197)	promoter-TSS (NR_131197)	151.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	47.65	51.31	37.65	40.22	37.23	43.59	38.53	40.43	88.31	66.28	106.53	29.45
Merged-chrX-121497393-1	chrX	121497293	121497493	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	899992.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	4.04	3.02	8.56	12.87	20.46	23.83	11.96	23.72	0.39	2.51	0.0	1.25
Merged-chr2-174473072-3	chr2	174472976	174473176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-135.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	199.07	214.8	173.42	153.64	228.28	273.44	185.02	165.11	224.62	314.32	349.23	153.5
Merged-chr12-16895495-3	chr12	16895362	16895562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	CpG	484.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	18.57	20.12	27.95	8.45	18.41	37.63	14.28	20.13	23.21	28.12	34.17	15.35
Merged-chr16-91452375-2	chr16	91452290	91452490	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12714.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	11.31	7.8	11.41	8.85	15.96	22.89	17.61	13.21	26.75	23.1	32.66	16.29
Merged-chr17-26514876-2	chr17	26514766	26514966	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6394.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.27	5.28	3.42	6.44	32.32	20.7	14.95	17.1	21.44	26.11	29.14	17.23
Merged-chr4-114987289-3	chr4	114987193	114987393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025647)	promoter-TSS (NM_025647)	-65.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	44.42	55.84	57.62	54.3	50.73	70.55	26.57	62.41	90.28	80.34	114.57	49.5
Merged-chr2-101781485-3	chr2	101781378	101781578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	16229.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	71.88	55.84	149.46	95.72	106.78	113.51	72.08	110.22	103.65	113.48	142.71	65.47
Merged-chr8-70549893-1	chr8	70549793	70549993	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	10218.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.44	0.75	0.0	2.01	45.41	26.03	37.54	32.24	3.15	4.02	3.01	0.63
Merged-chr13-23531043-3	chr13	23530932	23531132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-12.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	94.89	96.59	67.31	70.38	126.82	129.51	62.45	67.09	124.5	147.62	132.66	84.27
Merged-chr17-84108146-3	chr17	84108046	84108246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29486.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	58.95	46.28	68.45	55.91	64.23	75.26	47.83	59.22	56.06	75.82	69.34	36.97
Merged-chr8-3279573-3	chr8	3279465	3279665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	52.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	86.01	84.26	71.88	77.22	87.96	103.17	111.61	104.19	100.9	91.89	120.09	55.13
Merged-chr5-148554421-1	chr5	148554321	148554521	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1633.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.23	2.26	1.71	2.01	2.05	3.76	3.99	0.53	16.13	9.04	18.09	12.53
Merged-chr1-131021161-3	chr1	131021055	131021255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010548, intron 2 of 4)	intron (NM_010548, intron 2 of 4)	1310.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	27.46	21.13	31.38	24.13	32.32	17.25	20.59	25.21	35.4	20.08	39.19	16.29
Merged-chr5-117116109-3	chr5	117115981	117116181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178622)	promoter-TSS (NM_178622)	-88.0	NM_178622	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	47.24	52.82	42.21	28.56	31.5	56.13	37.54	32.78	50.16	69.79	42.21	39.78
Merged-chr6-83044971-3	chr6	83044856	83045056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-4755.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	41.19	35.21	51.34	36.2	65.46	43.27	43.85	51.67	65.5	75.32	71.35	49.18
Merged-chr2-35732220-3	chr2	35732120	35732320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35488.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	70.26	87.03	102.68	101.76	85.91	73.38	74.07	86.16	92.64	86.36	111.05	75.5
Merged-chr4-53133598-3	chr4	53133489	53133689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	26306.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	58.55	52.07	45.64	44.24	58.5	58.64	41.19	29.61	43.86	28.62	43.21	24.43
Merged-chr10-8535627-3	chr10	8535530	8535730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16805.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	28.67	19.37	26.24	28.15	28.23	39.82	18.27	32.89	30.88	16.57	30.65	19.42
Merged-chr11-78984958-3	chr11	78984859	78985059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-35.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	90.85	91.56	109.53	101.76	80.18	109.44	75.07	109.37	112.7	114.48	111.05	55.76
Merged-chr3-116594906-3	chr3	116594798	116594998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289571)	promoter-TSS (NM_001289571)	-11.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	90.05	72.19	52.48	80.04	100.23	90.62	73.74	86.38	108.38	102.93	111.55	52.32
Merged-chr11-53795381-3	chr11	53795271	53795471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24898.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	41.99	26.91	35.37	34.19	52.77	59.58	26.24	42.79	59.2	59.75	73.36	28.82
Merged-chr17-34850283-3	chr17	34850156	34850356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	-52.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	129.21	121.74	122.65	97.73	147.28	178.74	71.75	102.36	172.3	182.26	167.33	105.57
Merged-chr9-111046397-3	chr9	111046294	111046494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	10850.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	67.84	72.19	93.55	65.56	85.91	99.09	48.16	68.19	81.82	59.25	103.01	42.6
Merged-chr2-70978485-3	chr2	70978392	70978592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	39882.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	70.66	79.23	107.82	87.68	100.64	115.71	94.0	106.23	124.9	134.56	147.23	98.99
Merged-chr13-82949757-3	chr13	82949657	82949857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-251424.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	18.57	14.34	27.38	24.13	34.36	21.01	24.58	37.85	32.85	34.14	24.62	22.24
Merged-chr17-53566894-3	chr17	53566809	53567009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020005)	promoter-TSS (NM_020005)	-62.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	102.56	105.14	82.15	97.73	96.14	96.27	91.35	108.17	100.9	97.41	91.45	59.52
Merged-chr13-37337402-3	chr13	37337286	37337486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7959.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	28.67	34.96	45.64	47.06	26.59	32.3	38.86	39.06	36.78	28.62	50.25	35.4
Merged-chr12-76533699-5	chr12	76533583	76533783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039597)	promoter-TSS (NR_039597)	123.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	23.42	20.88	11.41	25.74	29.46	32.93	27.9	18.36	32.26	29.62	25.63	13.78
Merged-chr17-28085131-3	chr17	28085026	28085226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4487.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	27.46	34.96	34.23	18.5	27.41	33.55	11.63	26.92	56.06	59.75	42.21	29.45
Merged-chr13-91460963-3	chr13	91460844	91461044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-153.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	119.12	115.7	134.63	131.52	174.69	159.61	151.14	188.78	140.83	168.21	220.09	90.22
Merged-chr11-93996815-3	chr11	93996678	93996878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	687.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	50.47	37.73	57.62	43.04	47.87	79.33	48.16	43.85	64.51	61.26	65.83	39.78
Merged-chr2-32882806-3	chr2	32882677	32882877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	6643.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	34.73	44.52	49.06	29.76	81.82	102.85	53.15	60.76	74.54	73.31	75.37	43.54
Merged-chr17-21650606-3	chr17	21650501	21650701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-10.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	104.58	85.52	106.68	117.84	110.46	139.23	72.75	84.06	168.76	163.18	233.15	108.08
Merged-chr10-25318579-3	chr10	25318480	25318680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19417.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	73.09	64.64	100.4	115.03	87.55	120.73	96.0	140.3	145.35	114.48	140.19	69.86
Merged-chr4-150583699-3	chr4	150583602	150583802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	68472.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	56.13	34.96	58.19	56.31	58.5	48.29	32.55	60.39	52.91	49.71	56.78	44.48
Merged-chr2-152406272-3	chr2	152406165	152406365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8219.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	57.34	104.64	74.73	79.23	99.41	102.54	81.71	90.42	90.08	66.78	144.71	58.27
Merged-chr6-113714504-3	chr6	113714412	113714612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3180.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	33.92	19.62	23.96	38.61	38.05	26.03	26.91	35.16	26.36	30.63	47.23	26.31
Merged-chr15-73423901-3	chr15	73423798	73423998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-707.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	51.28	40.5	43.35	42.23	37.64	50.8	32.22	45.9	46.81	68.29	53.26	36.03
Merged-chr11-6416684-3	chr11	6416588	6416788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	818.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	18.98	18.86	25.67	20.51	28.64	35.75	17.61	26.24	37.17	25.61	51.25	31.95
Merged-chr6-71493924-3	chr6	71493839	71494039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	62.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	59.36	53.58	58.76	68.78	59.32	80.27	54.48	75.06	71.99	53.73	86.43	47.93
Merged-chr9-108853073-3	chr9	108852985	108853185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	-958.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	21.8	25.15	21.11	28.15	35.18	30.1	32.22	29.3	34.22	40.17	35.17	22.56
Merged-chr7-30169829-3	chr7	30169741	30169941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357557)	promoter-TSS (NM_001357557)	-81.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	69.86	49.3	63.32	50.68	81.0	84.04	41.19	62.75	100.9	66.28	111.55	56.07
Merged-chr12-111559835-3	chr12	111559717	111559917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	14585.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	96.51	83.76	106.1	74.81	49.5	69.93	38.2	50.07	62.55	63.27	75.87	47.93
Merged-chr14-67188944-3	chr14	67188834	67189034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44358.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	20.59	18.61	21.11	20.11	19.23	39.2	22.59	22.29	28.91	50.71	28.64	29.76
Merged-chr7-31002847-3	chr7	31002743	31002943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20922.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	36.34	24.9	49.06	38.21	63.0	47.66	56.47	59.44	52.12	74.81	72.86	40.1
Merged-chr4-59864088-3	chr4	59863994	59864194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50962.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	77.53	48.54	75.3	85.67	61.77	52.68	58.79	82.46	54.09	50.21	87.43	58.27
Merged-chr1-39367822-3	chr1	39367750	39367950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	-1.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	100.95	79.48	94.13	106.18	113.73	146.75	94.0	99.17	162.27	149.13	226.12	105.57
Merged-chr6-124830082-3	chr6	124829988	124830188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-88.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	45.23	56.34	79.29	55.5	83.46	94.7	58.46	81.5	132.76	132.56	147.73	54.51
Merged-chr1-155096871-3	chr1	155096758	155096958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2778.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	43.21	29.93	70.17	50.68	51.96	32.93	28.57	63.53	44.45	37.16	54.27	40.1
Merged-chr11-97533274-3	chr11	97533167	97533367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 10 of 19)	intron (NM_018873, intron 10 of 19)	-32927.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	30.69	16.6	30.23	29.36	42.14	37.63	20.26	31.09	50.75	34.14	24.62	24.43
Merged-chr5-125329381-3	chr5	125329285	125329485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	11709.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	31.5	18.36	34.23	26.55	63.0	40.45	60.79	59.86	35.21	32.64	43.72	37.28
Merged-chr6-88826240-3	chr6	88826140	88826340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15695.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	44.82	56.34	71.31	45.85	46.23	64.28	41.85	60.56	86.74	65.27	92.96	36.97
Merged-chr4-138217117-3	chr4	138217022	138217222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	-5.0	NM_001356432	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	98.12	107.91	111.81	75.21	141.55	158.04	83.71	101.27	160.89	179.75	162.8	103.69
Merged-chr9-13536883-3	chr9	13536777	13536977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83112.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	54.92	53.58	53.62	40.62	49.91	111.0	47.17	67.23	69.04	62.76	61.81	28.82
Merged-chr11-52072050-3	chr11	52071951	52072151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-26773.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	20.19	15.85	27.38	23.73	30.68	26.34	22.26	32.86	30.09	19.58	36.18	26.0
Merged-chr6-115361124-3	chr6	115361045	115361245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	1.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	33.92	33.96	19.4	25.34	34.36	32.61	23.58	29.94	33.44	26.11	38.19	19.11
Merged-chr19-41900716-3	chr19	41900616	41900816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4563.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	26.65	34.46	61.61	71.19	61.77	47.98	49.49	55.65	42.29	44.69	51.25	37.28
Merged-chr9-45268201-3	chr9	45268093	45268293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008348, intron 1 of 6)	intron (NM_008348, intron 1 of 6)	956.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	30.69	21.88	45.07	39.42	36.82	36.37	32.55	42.7	51.93	45.69	50.25	39.16
Merged-chr16-33951091-3	chr16	33951010	33951210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15928.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	52.09	43.26	48.49	42.63	49.5	65.85	45.18	65.3	58.22	89.37	52.76	43.54
Merged-chr7-59229207-3	chr7	59229099	59229299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173010, exon 1 of 9)	5' UTR (NM_173010, exon 1 of 9)	449.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	36.75	43.51	25.1	44.64	30.68	41.08	62.78	40.77	42.88	39.67	54.77	51.06
Merged-chr6-85451408-3	chr6	85451306	85451506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-99.0	NM_007638	12468.0	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	241.87	256.56	260.7	237.3	268.37	273.12	231.52	261.81	293.66	258.58	298.47	148.49
Merged-chr16-22009335-3	chr16	22009252	22009452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-132.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	182.52	191.92	194.53	177.77	191.87	283.16	139.18	173.22	271.63	250.55	278.88	168.85
Merged-chr6-124834703-3	chr6	124834556	124834756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013538)	TTS (NM_013538)	4480.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	58.95	49.05	59.33	77.22	77.73	65.54	71.75	95.83	83.59	81.34	121.6	68.29
Merged-chr12-113124954-3	chr12	113124878	113125078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-15258.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	68.24	82.0	79.86	103.77	60.55	74.32	59.79	72.7	71.59	59.25	118.59	71.42
Merged-chr1-93803864-3	chr1	93803771	93803971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-94.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	162.33	174.31	182.55	182.6	201.28	220.76	166.09	230.97	230.32	221.43	342.69	131.26
Merged-chr19-47137365-3	chr19	47137264	47137464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	930.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	41.19	28.17	47.92	51.88	34.36	41.39	39.86	56.02	46.22	52.22	59.29	33.83
Merged-chr13-55622945-3	chr13	55622811	55623011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-94.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	23.42	23.39	25.1	29.36	22.91	20.7	16.28	19.4	34.22	33.64	32.16	16.6
Merged-chr13-43365528-3	chr13	43365443	43365643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5173.0	NM_178848	68346.0	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	22.61	18.11	26.24	21.72	21.27	21.01	21.92	24.39	13.37	15.57	20.1	10.34
Merged-chr6-125572681-3	chr6	125572585	125572785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	MTD|LTR|ERVL-MaLR	19737.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	104.99	63.64	102.11	104.17	102.68	79.02	118.25	107.83	119.0	113.48	179.39	89.59
Merged-chr5-93267142-3	chr5	93267028	93267228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	-445.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	79.55	99.61	75.3	71.19	76.09	105.67	66.1	66.87	133.16	141.59	144.71	65.47
Merged-chr13-21941066-3	chr13	21940942	21941142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4052.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	41.59	40.75	45.07	52.29	40.5	33.55	30.56	37.07	33.04	40.67	35.68	18.8
Merged-chr3-87376348-3	chr3	87376243	87376443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-44.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	28.27	23.39	30.8	30.97	48.27	32.61	20.93	37.4	54.68	57.24	58.29	32.58
Merged-chr10-88622779-3	chr10	88622699	88622899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17647.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	21.4	14.59	15.97	40.62	33.55	41.71	45.84	50.94	20.06	20.59	32.66	28.51
Merged-chr2-124684707-3	chr2	124684610	124684810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31129.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	183.32	184.12	219.06	195.47	200.46	232.04	214.58	203.02	213.01	215.4	301.99	131.57
Merged-chr3-60570848-3	chr3	60570732	60570932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	69653.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	16.15	10.06	27.95	21.72	32.73	19.76	13.29	26.55	25.96	22.59	24.12	14.41
Merged-chr7-101907131-3	chr7	101907044	101907244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	-785.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	41.99	31.44	55.33	59.12	51.96	44.53	36.21	53.22	46.81	20.59	49.75	45.74
Merged-chr9-65655656-3	chr9	65655543	65655743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028030, intron 6 of 7)	ID_B1|SINE|B4	-20905.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	68.65	52.32	71.88	69.58	58.09	68.99	33.88	64.43	37.37	26.11	79.39	38.22
Merged-chr5-30814606-3	chr5	30814521	30814721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133350)	promoter-TSS (NM_133350)	-20.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	42.4	41.25	21.68	34.59	45.82	41.08	24.91	24.11	48.98	48.7	59.8	35.4
Merged-chr17-84957352-2	chr17	84957230	84957430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	93.0	NR_027929	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	97.72	93.07	89.56	120.26	77.32	118.84	106.96	84.73	142.99	153.64	198.48	83.33
Merged-chr3-144039638-3	chr3	144039498	144039698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162734.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	23.82	27.17	30.8	37.81	22.5	24.15	32.88	25.04	30.68	27.11	39.7	19.11
Merged-chr1-40087671-3	chr1	40087583	40087783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360800, intron 1 of 8)	MER5A|DNA|hAT-Charlie	1590.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	50.47	39.74	55.33	48.26	32.32	44.21	32.22	33.22	42.29	44.69	59.8	37.91
Merged-chr18-23807841-3	chr18	23807775	23807975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3905.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	86.41	70.93	98.12	98.94	112.5	81.53	75.4	94.79	92.25	83.85	112.56	64.22
Merged-chr15-10470301-3	chr15	10470212	10470412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030046, exon 1 of 12)	exon (NM_030046, exon 1 of 12)	204.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	83.59	51.31	69.6	45.85	78.14	70.87	65.77	100.82	79.27	65.27	135.17	43.23
Merged-chr13-30545372-3	chr13	30545271	30545471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025710)	promoter-TSS (NM_025710)	-55.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	89.24	89.8	88.99	110.6	76.91	114.45	81.71	105.2	156.17	146.11	165.32	76.75
Merged-chr9-41153078-3	chr9	41152968	41153168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	4994.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	23.42	31.44	27.38	24.53	39.68	45.15	50.49	63.11	47.01	31.13	62.31	25.37
Merged-chr5-24101032-3	chr5	24100938	24101138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161800, intron 1 of 9)	CpG	448.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	18.98	18.36	10.27	14.88	17.18	16.31	27.24	18.39	21.44	23.6	20.6	11.28
Merged-chr10-127599614-3	chr10	127599503	127599703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	21545.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	64.2	64.64	86.14	49.07	72.41	124.8	72.08	75.62	76.51	75.32	79.89	54.51
Merged-chr18-80707706-3	chr18	80707634	80707834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	CpG	439.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	11.31	12.58	18.25	9.65	20.46	20.07	18.93	14.89	20.65	16.07	26.13	19.74
Merged-chr7-100591119-3	chr7	100590995	100591195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	319.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	45.23	52.57	41.07	51.48	58.91	65.85	46.84	53.16	47.01	56.24	58.29	38.85
Merged-chr11-120347588-3	chr11	120347476	120347676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	-163.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	54.92	49.55	38.22	33.78	23.32	37.32	27.57	13.6	59.4	58.75	66.83	26.63
Merged-chr12-21370447-3	chr12	21370363	21370563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3169.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	56.13	60.12	48.49	55.5	51.55	84.98	43.18	52.37	63.33	56.24	43.21	26.94
Merged-chr12-102439834-3	chr12	102439717	102439917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-4.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	199.48	193.17	213.35	201.9	216.01	246.15	187.68	215.52	233.67	274.65	326.61	176.37
Merged-chr10-77545112-3	chr10	77544994	77545194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 3 of 15)	intron (NM_008404, intron 3 of 15)	14746.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	37.96	37.98	91.27	66.77	58.91	60.21	25.91	54.34	55.07	38.66	78.39	41.98
Merged-chr14-17851080-3	chr14	17850916	17851116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	MER2|DNA|TcMar-Tigger	-130628.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	30.28	33.45	17.68	14.48	18.82	30.1	10.3	17.75	41.7	24.1	26.63	16.92
Merged-chr9-48388642-1	chr9	48388542	48388742	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172921, intron 2 of 8)	RLTR19D|LTR|ERVK	26601.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.0	0.5	0.0	0.0	2.45	0.31	1.33	0.34	30.09	25.61	31.66	31.64
Merged-chr12-3349585-3	chr12	3349496	3349696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15536.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	22.21	17.86	15.97	11.26	42.14	30.1	23.92	35.78	40.91	49.71	27.64	22.87
Merged-chr5-91961118-3	chr5	91961021	91961221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1435.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	29.48	26.16	29.66	23.33	34.77	33.87	28.23	27.53	43.27	38.66	32.16	36.65
Merged-chr2-36217163-3	chr2	36217069	36217269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13257.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	73.09	51.81	90.7	86.47	80.18	63.03	54.48	96.39	93.43	86.36	109.04	67.98
Merged-chr17-71598777-3	chr17	71598701	71598901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-40.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	77.53	73.19	69.03	61.13	90.41	92.82	69.76	99.17	140.83	114.48	140.19	88.03
Merged-chr5-114707753-3	chr5	114707638	114707838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029992)	promoter-TSS (NM_029992)	-41.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	43.61	30.94	26.24	28.15	27.82	31.98	17.27	22.54	41.89	30.63	32.66	24.12
Merged-chr5-92042815-3	chr5	92042707	92042907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276315)	promoter-TSS (NM_001276315)	-111.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	54.11	52.82	62.18	56.31	66.68	77.45	89.69	78.95	80.45	97.41	76.38	45.42
Merged-chr11-46480694-3	chr11	46480610	46480810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	25779.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	84.8	67.41	140.9	133.93	123.55	121.67	116.59	129.93	62.15	78.33	105.02	57.64
Merged-chr5-77265260-3	chr5	77265159	77265359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011263)	promoter-TSS (NM_011263)	-235.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	64.61	45.78	41.64	44.64	67.5	68.99	76.07	89.89	62.35	52.72	90.45	40.41
Merged-chr6-53566911-3	chr6	53566787	53566987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-6487.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	11.71	14.59	7.42	15.28	18.41	20.07	10.96	11.72	23.41	25.61	27.13	10.02
Merged-chr19-5457544-3	chr19	5457433	5457633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	30.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	52.49	35.72	48.49	34.99	42.55	56.44	41.19	45.98	50.55	47.7	54.27	25.37
Merged-chr15-99333158-3	chr15	99333062	99333262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	29878.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	62.18	58.1	82.72	86.07	97.37	120.1	59.46	81.14	70.02	90.38	90.45	52.63
Merged-chr11-31870747-3	chr11	31870551	31870751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290676)	promoter-TSS (NM_001290676)	-289.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	73.49	76.72	81.0	85.67	63.82	79.33	82.71	64.09	93.82	134.56	160.79	82.08
Merged-chr18-77804870-3	chr18	77804762	77804962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-8472.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	19.38	35.97	34.23	42.23	19.64	23.83	29.23	27.25	38.35	31.13	37.69	21.3
Merged-chr13-34037647-3	chr13	34037550	34037750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026512)	promoter-TSS (NM_026512)	9.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	19.38	12.58	13.12	14.48	25.77	23.83	16.94	31.18	19.87	21.59	39.7	22.56
Merged-chr1-43521210-3	chr1	43521111	43521311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75460.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	46.44	23.64	42.21	51.88	52.77	55.82	49.16	85.65	74.54	58.24	98.49	39.16
Merged-chr15-102296206-3	chr15	102296099	102296299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014976)	promoter-TSS (NM_001014976)	-94.0	NM_001014976	105988.0	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	40.38	28.67	30.23	27.75	47.46	36.37	14.62	32.3	51.93	49.21	49.24	28.19
Merged-chr8-22838892-3	chr8	22838789	22838989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-20650.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	101.76	85.52	117.51	132.73	97.37	116.02	80.05	140.61	117.42	102.43	111.55	84.27
Merged-chr9-108094565-3	chr9	108094474	108094674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	-94.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	83.18	83.26	81.58	76.82	108.41	103.17	63.44	87.22	100.7	99.42	141.7	64.22
Merged-chr2-119016006-3	chr2	119015897	119016097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13396.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	116.7	98.6	131.21	107.39	112.09	110.38	87.36	139.6	108.77	83.35	132.15	74.87
Merged-chr17-47214283-3	chr17	47214179	47214379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-15951.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	25.04	13.83	54.19	29.36	20.05	16.93	23.25	33.81	17.51	26.61	30.15	16.6
Merged-chr11-9531867-3	chr11	9531783	9531983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339941.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	19.38	19.37	23.39	48.26	40.5	32.61	34.88	43.85	42.68	38.66	62.81	40.1
Merged-chr1-131963829-3	chr1	131963730	131963930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	915.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	29.88	27.92	41.07	53.49	49.91	27.28	40.19	69.79	42.88	34.65	56.78	33.83
Merged-chr2-32078716-3	chr2	32078634	32078834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4971.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	58.15	57.1	56.48	48.26	70.77	84.98	53.48	50.92	76.51	60.75	82.41	31.33
Merged-chr17-81518510-3	chr17	81518400	81518600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219887.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	18.57	23.9	35.37	28.56	20.86	28.54	14.95	45.22	30.88	17.07	29.14	18.8
Merged-chr1-39578689-3	chr1	39578605	39578805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1358.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	66.63	79.73	93.55	65.56	104.32	162.43	131.87	115.09	161.68	174.23	156.27	91.79
Merged-chr13-101907889-3	chr13	101907783	101907983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139666.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	52.09	50.81	53.62	49.07	76.91	100.03	101.31	59.05	86.15	80.84	87.43	28.19
Merged-chr11-51688712-3	chr11	51688615	51688815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-81.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	125.18	129.54	96.41	148.01	114.96	156.47	88.03	106.94	191.77	162.68	207.02	129.07
Merged-chr6-143115233-3	chr6	143115157	143115357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	-15105.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	35.13	27.42	45.07	31.77	34.77	50.17	76.4	103.71	61.96	38.16	67.33	38.53
Merged-chr6-113483350-3	chr6	113483244	113483444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-12.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	140.12	136.58	164.29	117.44	146.46	219.5	92.68	181.85	176.43	162.18	171.85	99.62
Merged-chr3-30860903-1	chr3	30860803	30861003	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	Lx8b|LINE|L1	4953.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	6.46	2.77	6.28	2.41	10.64	0.0	3.99	11.33	3.93	7.03	4.52	5.33
Merged-chr7-90129467-3	chr7	90129367	90129567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	7.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	163.13	155.44	156.88	136.35	150.96	196.3	126.56	151.65	142.99	171.22	210.04	95.23
Merged-chr17-43077191-3	chr17	43077061	43077261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	60606.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	55.72	35.21	54.19	57.51	45.0	47.66	34.88	51.53	38.35	34.65	48.24	21.62
Merged-chr8-22658083-3	chr8	22657905	22658105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4568.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	25.04	20.88	18.83	29.36	19.64	22.26	21.26	21.17	23.6	29.62	33.16	5.95
Merged-chr1-178319468-1	chr1	178319368	178319568	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025511, intron 1 of 3)	PB1D10|SINE|Alu	315.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	14.94	10.56	14.83	16.09	19.64	14.11	14.28	23.3	31.08	18.58	19.09	16.29
Merged-chr2-79056291-3	chr2	79056197	79056397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186619.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	37.55	26.16	40.5	37.4	41.32	34.18	28.23	52.96	37.76	41.67	36.68	22.56
Merged-chr12-99561430-3	chr12	99561288	99561488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2453.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	23.82	20.63	14.26	18.1	55.23	43.27	17.94	28.6	36.98	34.14	21.61	29.13
Merged-chr7-75142759-1	chr7	75142659	75142859	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360573, intron 7 of 13)	CT-rich|Low_complexity|Low_complexity	77260.0	NM_001360575	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.04	3.27	3.42	2.41	1.64	5.96	7.97	5.86	5.9	1.0	1.51	1.57
Merged-chr10-80142290-3	chr10	80142182	80142382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	7.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	111.85	94.32	83.29	123.48	111.28	168.7	65.77	93.81	137.29	112.97	150.74	67.98
Merged-chr4-145241106-3	chr4	145240950	145241150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	5820.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	62.18	72.69	56.48	67.17	60.55	91.88	82.05	64.82	96.77	110.46	133.16	75.5
Merged-chr7-30973957-3	chr7	30973848	30974048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017405)	promoter-TSS (NM_017405)	144.0	NR_038860	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	36.75	43.77	35.94	34.99	48.68	51.43	45.51	41.5	60.97	62.76	75.87	38.53
Merged-chr2-11375267-3	chr2	11375189	11375389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	23211.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	39.57	44.77	54.76	80.84	58.09	62.09	53.48	67.49	80.25	66.78	121.1	61.4
Merged-chr10-123076411-3	chr10	123076274	123076474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153395, exon 1 of 34)	5' UTR (NM_153395, exon 1 of 34)	131.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	135.68	101.37	122.08	109.0	123.96	126.06	104.63	145.63	134.34	149.63	205.52	93.98
Merged-chr14-31408023-3	chr14	31407920	31408120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	9657.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	19.79	11.82	24.53	13.27	42.14	29.16	13.95	48.42	33.44	19.58	26.63	24.75
Merged-chr1-134494610-3	chr1	134494521	134494721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-39.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	124.37	113.69	130.63	121.46	141.14	145.81	79.06	107.36	137.09	174.23	190.44	86.46
Merged-chr19-42018078-3	chr19	42017978	42018178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-17960.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	39.57	32.95	35.94	36.2	43.36	43.9	34.55	40.23	35.01	41.17	38.69	19.42
Merged-chr9-90237654-1	chr9	90237554	90237754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	MIR3|SINE|MIR	33115.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	22.61	16.1	66.74	48.26	37.64	36.37	64.77	75.31	43.27	46.7	92.96	42.29
Merged-chr14-25780812-3	chr14	25780715	25780915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-11959.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	26.65	35.47	57.62	23.73	26.18	45.15	34.88	58.32	24.19	31.13	33.16	26.94
Merged-chr6-97857895-3	chr6	97857788	97857988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	50830.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	47.24	47.04	45.64	65.96	43.36	55.5	40.19	55.68	57.04	45.69	55.27	20.68
Merged-chr18-67699745-3	chr18	67699660	67699860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24861.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	33.52	27.17	43.93	32.58	31.5	32.3	18.27	34.88	41.3	49.21	62.81	18.8
Merged-chr7-80033540-3	chr7	80033437	80033637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	ID4|SINE|ID	7309.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	27.05	27.17	34.23	32.98	33.55	37.63	18.6	23.07	60.78	40.67	33.16	40.41
Merged-chr6-148831533-3	chr6	148831427	148831627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081113)	promoter-TSS (NM_001081113)	-60.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	94.08	80.99	54.19	84.06	104.73	100.34	87.69	113.5	111.13	89.88	145.72	75.81
Merged-chr10-62500399-3	chr10	62500305	62500505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	7352.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	35.53	32.95	21.11	32.98	29.05	42.33	9.97	31.85	50.16	51.72	54.27	19.11
Merged-chr10-58393231-3	chr10	58393124	58393324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-1149.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	62.99	66.91	99.26	105.38	68.73	80.9	76.73	95.38	110.34	106.45	98.49	65.47
Merged-chr7-80835513-3	chr7	80835417	80835617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-26591.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	31.09	11.32	17.11	21.72	20.05	20.38	23.92	28.01	31.08	23.6	36.68	31.01
Merged-chr11-32538945-3	chr11	32538862	32539062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	5696.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	79.95	61.12	60.47	59.53	103.91	92.19	100.32	147.03	84.77	79.33	113.06	49.81
Merged-chr4-34389396-3	chr4	34389274	34389474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-161241.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	40.78	23.14	32.52	40.62	49.91	37.94	35.54	41.13	34.42	28.12	49.24	19.42
Merged-chr9-66975423-3	chr9	66975327	66975527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	57.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	38.36	34.71	23.96	31.77	34.36	40.45	29.23	28.32	61.17	43.18	49.24	26.63
Merged-chr6-136940172-3	chr6	136940059	136940259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-632.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	44.01	53.07	55.33	47.86	58.91	45.15	33.88	55.63	75.72	76.82	108.54	38.22
Merged-chr13-32935145-3	chr13	32935031	32935231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30382.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	60.57	52.32	61.04	54.7	67.91	66.48	81.05	93.17	86.15	68.29	93.96	48.87
Merged-chr13-51845713-3	chr13	51845636	51845836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-939.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	30.69	39.24	25.67	25.74	39.27	31.04	23.58	32.61	44.45	27.11	44.22	30.07
Merged-chr6-93068036-1	chr6	93067936	93068136	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	127454.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	1.14	0.0	2.45	2.82	7.64	11.75	0.2	2.01	0.0	0.31
Merged-chr6-72933166-2	chr6	72933064	72933264	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25068.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	0.0	1.61	108.82	98.46	93.34	132.93	127.45	90.38	152.25	83.64
Merged-chr8-80335876-1	chr8	80335776	80335976	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-158169.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	3.63	3.52	11.41	8.04	16.77	2.2	17.94	4.71	11.41	10.04	8.54	2.51
Merged-chr5-113910225-3	chr5	113910126	113910326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1520.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	38.76	21.38	42.21	21.32	49.09	57.38	23.25	39.48	50.35	54.23	59.8	38.22
Merged-chr17-83680443-3	chr17	83680341	83680541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-25722.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	45.23	26.16	54.76	49.07	27.82	27.59	29.56	41.66	35.21	35.65	34.67	30.39
Merged-chr2-58921215-3	chr2	58921136	58921336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	166052.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	43.21	46.03	59.9	59.93	55.23	61.77	62.78	93.98	75.53	48.7	97.98	48.24
Merged-chr6-125334591-3	chr6	125334483	125334683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 3 of 11)	L1MB7|LINE|L1	13243.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	46.03	29.68	51.34	37.0	57.27	69.93	42.19	49.4	63.53	60.75	72.36	43.54
Merged-chr14-20661167-3	chr14	20661064	20661264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3410.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	71.47	50.31	54.76	61.94	71.59	77.14	31.89	77.64	80.84	107.45	98.49	62.34
Merged-chr11-121706938-3	chr11	121706839	121707039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4512.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	29.07	31.44	15.97	45.45	25.36	33.87	10.96	30.5	51.93	22.59	41.71	26.31
Merged-chr16-49971468-3	chr16	49971371	49971571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8989.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	53.3	41.75	69.6	64.75	90.0	69.93	63.78	78.28	80.25	81.34	145.22	44.48
Merged-chr7-43665130-3	chr7	43665022	43665222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4961.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	58.15	41.0	53.62	28.15	45.0	60.52	24.91	27.11	62.15	66.28	70.85	31.01
Merged-chr3-135423326-3	chr3	135423237	135423437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	96.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	89.24	114.95	97.55	134.33	105.14	140.79	175.72	100.6	116.64	117.49	117.08	95.55
Merged-chr2-167777512-3	chr2	167777439	167777639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	86362.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	135.27	114.45	136.91	88.89	185.32	198.81	130.54	155.92	160.89	198.33	186.92	93.04
Merged-chr3-142765170-3	chr3	142765064	142765264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145546)	promoter-TSS (NM_145546)	-83.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	219.26	221.85	129.49	170.93	182.05	245.21	167.08	193.51	287.36	280.17	234.16	151.93
Merged-chr4-129495936-3	chr4	129495833	129496033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4743.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	103.37	98.35	118.65	100.15	118.64	174.35	82.05	96.59	121.36	130.55	165.82	76.75
Merged-chr5-96997510-3	chr5	96997407	96997607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-182.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	154.25	137.59	111.81	90.9	144.41	173.09	151.14	126.62	159.71	152.14	207.02	86.46
Merged-chr13-74317339-3	chr13	74317234	74317434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011051)	promoter-TSS (NM_011051)	-8.0	NM_001359996	18570.0	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	118.31	86.78	114.66	143.18	132.55	119.16	111.94	183.98	157.94	143.6	215.06	101.5
Merged-chr8-128594299-3	chr8	128594211	128594411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-91343.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	18.57	13.58	21.68	14.48	21.68	24.15	21.59	33.84	17.9	21.59	41.2	18.17
Merged-chr16-31081397-3	chr16	31081304	31081504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198626)	promoter-TSS (NM_198626)	28.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	82.37	79.73	90.13	73.2	98.59	107.87	80.39	96.93	94.61	103.43	107.53	57.95
Merged-chr2-117328722-3	chr2	117328644	117328844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	14133.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	21.0	15.09	21.68	6.84	40.09	24.15	13.62	15.56	36.39	28.12	29.14	20.05
Merged-chr13-55040247-3	chr13	55040147	55040347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359758, intron 11 of 14)	intron (NM_001359758, intron 11 of 14)	-18862.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	31.9	27.67	33.09	27.35	36.0	39.2	47.5	42.5	45.63	44.19	42.21	42.29
Merged-chr16-90747265-3	chr16	90747136	90747336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	8912.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	18.17	9.56	11.98	13.27	12.68	12.86	13.29	13.54	27.54	23.1	28.14	18.8
Merged-chr8-105855009-3	chr8	105854896	105855096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021513)	promoter-TSS (NM_021513)	-107.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	39.98	34.71	32.52	37.4	36.0	45.47	35.54	37.54	40.71	44.69	35.68	33.21
Merged-chr12-76403806-1	chr12	76403706	76403906	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	-370.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	50.47	67.16	61.04	76.02	63.0	60.21	77.06	51.79	62.15	87.37	80.9	44.17
Merged-chr2-129198622-3	chr2	129198486	129198686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-187.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	121.14	105.64	106.68	100.15	148.91	189.08	93.01	123.14	196.88	202.85	253.75	121.23
Merged-chr13-100602426-2	chr13	100602321	100602521	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	14523.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	4.04	2.52	0.0	4.02	71.59	48.6	32.55	64.65	53.89	55.23	73.36	40.72
Merged-chr16-36632348-3	chr16	36632256	36632456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	33721.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	106.2	93.57	97.55	86.07	110.05	134.84	100.65	96.62	105.82	116.49	144.21	65.79
Merged-chr5-64887249-3	chr5	64887140	64887340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45459.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	49.67	58.1	25.1	28.56	40.91	75.26	63.78	36.95	47.8	45.19	39.19	19.74
Merged-chr2-158361516-3	chr2	158361414	158361614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027887)	promoter-TSS (NR_027887)	-5.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	15.75	12.58	24.53	22.12	24.96	33.87	13.29	21.73	40.32	27.11	36.68	20.99
Merged-chr16-44199215-3	chr16	44199107	44199307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029889, intron 3 of 7)	intron (NM_001029889, intron 3 of 7)	25810.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	60.57	62.63	82.72	73.6	108.41	80.27	84.37	96.22	83.4	77.32	106.02	77.38
Merged-chrX-134541805-3	chrX	134541705	134541905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013898).2	promoter-TSS (NM_013898).2	-135.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	28.67	48.04	46.21	35.39	50.32	59.89	50.82	47.94	38.35	72.3	50.75	34.77
Merged-chr18-23989593-3	chr18	23989478	23989678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-56.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	65.41	69.17	72.45	47.46	60.55	87.17	61.12	81.22	66.87	76.82	84.92	62.03
Merged-chr1-62483240-3	chr1	62483127	62483327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 20 of 22)	L2c|LINE|L2	-220090.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	18.57	20.88	23.39	23.33	39.27	56.76	27.24	52.63	12.0	22.59	20.6	23.18
Merged-chr10-128779670-3	chr10	128779575	128779775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11235.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	161.92	110.92	118.65	119.86	151.78	160.24	122.9	133.68	173.48	189.8	173.86	113.4
Merged-chr5-64336917-3	chr5	64336820	64337020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106563.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	31.5	16.35	23.39	30.57	41.73	20.38	29.9	47.55	44.84	40.67	52.26	34.77
Merged-chr5-32997873-3	chr5	32997744	32997944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20972.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	75.91	48.8	69.03	73.2	65.46	64.91	88.03	79.79	60.58	44.19	79.89	40.41
Merged-chr1-77279759-3	chr1	77279660	77279860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217008.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	44.42	45.78	42.21	35.39	58.5	47.04	36.54	60.59	63.92	65.27	93.96	41.66
Merged-chr11-43681861-3	chr11	43681751	43681951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-147.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	239.85	259.33	279.52	304.06	293.33	309.5	234.51	311.95	343.02	347.96	455.75	203.31
Merged-chr2-180920985-3	chr2	180920870	180921070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-34.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	123.97	128.78	92.98	113.42	146.46	142.05	115.93	104.8	140.24	165.19	170.84	80.2
Merged-chr4-88537575-3	chr4	88537474	88537674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14780.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	51.69	56.85	86.71	68.78	76.91	67.73	68.43	105.31	79.07	54.23	99.49	53.88
Merged-chr4-132306188-3	chr4	132306121	132306321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-2457.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	23.42	18.61	33.66	20.91	30.27	21.64	30.56	32.38	42.09	17.57	40.2	25.06
Merged-chr17-50508874-3	chr17	50508776	50508976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	-671.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	27.46	25.4	21.11	29.76	32.32	32.93	19.6	31.29	28.91	33.14	44.72	34.46
Merged-chr18-70522322-3	chr18	70522241	70522441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289515, intron 6 of 9)	intron (NM_001289515, intron 6 of 9)	5555.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	25.44	29.18	36.51	42.23	67.91	70.24	49.49	93.95	73.56	49.71	98.49	44.8
Merged-chr19-36926049-3	chr19	36925956	36926156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-23.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	71.07	55.08	71.88	66.36	65.05	66.79	27.24	66.0	150.27	104.44	141.2	73.3
Merged-chr19-53248263-3	chr19	53248174	53248374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001277100)	TTS (NM_001277100)	6931.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	28.67	29.43	27.38	24.94	36.0	38.26	15.61	40.09	31.27	27.62	43.72	21.62
Merged-chr6-52921525-3	chr6	52921439	52921639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11919.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	29.88	26.91	47.92	37.0	48.27	31.67	25.24	47.36	31.47	40.67	49.75	27.25
Merged-chr12-72536285-3	chr12	72536186	72536386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-71.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	208.36	196.19	223.62	236.9	255.69	270.3	248.13	331.82	262.97	267.62	410.53	203.31
Merged-chr2-69015346-3	chr2	69015184	69015384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-120516.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	25.04	47.29	77.01	51.48	37.64	37.32	47.83	58.09	57.83	40.67	57.28	48.56
Merged-chr11-115692981-3	chr11	115692884	115693084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	6550.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	123.56	112.68	120.37	136.35	102.28	120.1	97.99	101.47	113.69	121.01	184.41	105.88
Merged-chr4-136286044-3	chr4	136285965	136286165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-2.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	82.78	49.8	44.5	52.69	78.55	90.31	51.82	61.29	90.67	90.88	86.43	64.85
Merged-chr6-5093812-3	chr6	5093713	5093913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	MLT1F2|LTR|ERVL-MaLR	100133.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	79.14	55.08	108.96	119.45	89.59	87.8	90.02	138.59	104.64	79.33	137.68	83.02
Merged-chr11-9335430-3	chr11	9335351	9335551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143509.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	48.05	34.96	38.79	42.63	52.77	87.8	35.87	63.9	97.56	80.34	131.65	62.03
Merged-chr7-63903867-3	chr7	63903770	63903970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-12987.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	21.8	21.13	21.68	21.72	36.82	39.51	35.54	38.89	27.93	29.12	40.7	22.56
Merged-chr3-105895436-3	chr3	105895342	105895542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8979.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	49.26	51.06	53.62	51.88	90.82	66.79	33.22	48.53	71.99	81.34	85.92	49.81
Merged-chr11-106388095-3	chr11	106388001	106388201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5320.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	19.38	20.37	17.11	18.5	25.77	34.49	26.24	18.11	24.39	25.11	32.66	23.49
Merged-chr1-74438174-3	chr1	74438079	74438279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28795.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	102.56	67.41	108.96	87.28	112.5	136.09	72.41	97.74	109.95	99.92	138.69	82.39
Merged-chr7-127091284-1	chr7	127091184	127091384	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178901)	promoter-TSS (NM_178901)	-152.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	1.62	1.26	2.28	0.0	67.09	55.5	27.9	42.34	4.52	1.0	2.51	5.64
Merged-chr18-40329820-1	chr18	40329720	40329920	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	71459.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.87	19.67	29.12	35.17	24.75
Merged-chr1-170867833-3	chr1	170867776	170867976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-105.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	37.55	31.44	19.4	22.12	19.64	26.65	15.61	17.89	50.94	37.66	21.61	17.86
Merged-chr2-90542849-3	chr2	90542745	90542945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37802.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	108.22	130.79	151.74	110.6	173.87	223.58	124.23	143.3	171.51	178.75	192.95	99.31
Merged-chr2-103797449-4	chr2	103797345	103797545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111290)	promoter-TSS (NM_001111290)	195.0	NM_001111291	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	38.76	47.54	57.62	49.87	44.59	48.29	54.14	48.81	51.53	43.18	43.21	40.41
Merged-chr9-57651074-3	chr9	57650987	57651187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2544.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	46.84	46.78	47.35	58.32	47.87	47.66	39.86	50.41	54.68	38.16	63.82	49.5
Merged-chr10-19063581-3	chr10	19063486	19063686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-48176.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	35.94	17.36	18.25	18.1	38.05	33.87	14.28	15.14	35.21	48.7	39.7	21.62
Merged-chr4-132535610-3	chr4	132535500	132535700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	41.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	22.61	23.14	30.8	16.89	23.32	39.82	23.25	19.46	49.76	35.65	28.14	35.4
Merged-chr2-129310018-3	chr2	129309928	129310128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-56.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	59.76	62.38	62.18	61.54	37.64	64.28	41.85	34.74	63.73	48.7	73.36	34.46
Merged-chr13-104228868-3	chr13	104228782	104228982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021790)	promoter-TSS (NM_021790)	-38.0	NM_172807	238831.0	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	173.63	175.31	161.44	141.98	176.32	212.29	136.52	183.03	229.34	182.26	249.23	166.66
Merged-chr3-89730682-3	chr3	89730579	89730779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-39.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	34.32	37.23	31.38	24.13	46.23	36.69	25.58	40.07	35.6	45.19	64.32	20.68
Merged-chr7-28962414-3	chr7	28962308	28962508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360548)	promoter-TSS (NM_001360548)	-76.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	140.12	114.45	91.84	106.58	120.69	151.14	94.67	111.0	143.58	134.06	155.27	65.47
Merged-chr13-74009361-3	chr13	74009278	74009478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-41.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	114.27	73.19	86.71	106.99	121.91	104.42	68.1	159.28	100.11	114.98	167.83	88.97
Merged-chr18-56975330-3	chr18	56975245	56975445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	34.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	38.36	28.17	23.39	43.44	42.96	40.76	36.54	51.31	46.22	43.68	66.83	33.52
Merged-chr17-26886236-3	chr17	26886124	26886324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-30867.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	38.76	33.45	50.2	29.36	30.27	60.21	20.26	38.22	54.09	32.64	44.22	20.36
Merged-chr19-47133280-3	chr19	47133178	47133378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133746, intron 2 of 2)	intron (NM_133746, intron 2 of 2)	5016.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	29.48	18.86	30.8	46.25	47.46	47.66	53.48	50.33	35.99	28.12	39.7	30.39
Merged-chr5-88720830-3	chr5	88720727	88720927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026735)	promoter-TSS (NM_026735)	-44.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	161.11	138.59	177.98	133.93	173.46	184.07	131.21	202.6	215.37	247.04	253.25	126.87
Merged-chr3-105815483-3	chr3	105815408	105815608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045845)	promoter-TSS (NR_045845)	-59.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	37.15	25.66	68.45	34.99	39.68	40.14	28.23	59.08	49.76	58.24	70.35	27.57
Merged-chr13-12258204-3	chr13	12258125	12258325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-112.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	144.56	117.46	152.31	174.55	145.23	149.89	146.49	167.89	208.69	206.37	273.85	135.33
Merged-chr13-44937911-3	chr13	44937810	44938010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 7 of 9)	RMER17C2|LTR|ERVK	64186.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	22.61	13.08	24.53	45.05	27.41	32.3	29.56	38.78	38.94	32.13	32.16	21.3
Merged-chr11-107012799-3	chr11	107012688	107012888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13263.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	59.76	59.86	49.06	40.22	55.64	74.0	24.91	32.83	57.04	69.79	46.23	42.6
Merged-chr3-65397382-3	chr3	65397281	65397481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4828.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	37.55	22.89	21.68	31.37	46.64	27.91	21.59	48.5	32.06	35.65	35.68	16.6
Merged-chr13-105051626-1	chr13	105051526	105051726	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	3304.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	3.23	4.53	4.56	8.85	14.32	5.02	4.98	12.22	4.52	3.51	2.51	4.07
Merged-chr16-13109774-3	chr16	13109670	13109870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015769)	promoter-TSS (NM_015769)	34.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	165.56	204.74	186.54	225.23	216.01	194.73	156.45	161.33	203.97	219.42	297.47	128.75
Merged-chr1-172370172-2	chr1	172370086	172370286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001039484, exon 2 of 2)	3' UTR (NM_001039484, exon 2 of 2)	-6345.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	20.59	16.6	22.82	27.75	34.77	24.77	23.25	30.06	2.75	4.02	0.0	4.07
Merged-chr11-121796225-3	chr11	121796111	121796311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34007.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	22.61	20.12	56.48	36.6	66.27	74.94	55.8	68.5	59.2	74.81	91.45	43.54
Merged-chr11-68706681-3	chr11	68706586	68706786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	14771.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	25.04	20.63	25.67	59.12	80.18	76.2	55.8	54.42	62.35	49.21	58.79	43.23
Merged-chr1-46849949-3	chr1	46849844	46850044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3674.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	26.25	29.93	38.22	28.56	55.64	44.21	23.58	61.82	57.43	56.24	55.27	39.47
Merged-chr2-45196689-3	chr2	45196587	45196787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79245.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	50.07	43.01	42.21	42.23	51.96	54.88	46.17	57.79	65.3	45.69	72.36	37.91
Merged-chr12-104124187-1	chr12	104124087	104124287	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-3809.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	3.23	1.01	3.42	1.21	6.55	9.72	5.65	14.72	3.54	7.03	6.03	5.33
Merged-chr8-83566739-3	chr8	83566641	83566841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025843)	promoter-TSS (NM_025843)	-17.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	30.69	26.16	30.23	39.01	29.05	40.76	20.26	36.34	45.24	41.17	66.83	40.72
Merged-chr1-34838495-3	chr1	34838380	34838580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4570.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	30.28	25.4	40.5	36.6	38.46	35.75	39.86	62.75	47.21	39.67	64.32	43.54
Merged-chr10-118085472-3	chr10	118085364	118085564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56323.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	88.84	92.31	128.35	136.75	125.59	132.33	174.06	176.24	141.22	109.46	180.39	88.97
Merged-chr14-17899902-1	chr14	17899802	17900002	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-81742.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	1.01	2.85	0.8	2.45	1.57	8.97	11.3	3.74	1.51	4.02	2.82
Merged-chr5-144003019-3	chr5	144002921	144003121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177682, intron 7 of 14)	intron (NM_177682, intron 7 of 14)	11832.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	18.57	30.18	46.78	56.31	38.05	38.26	24.91	42.06	48.58	34.14	45.73	32.58
Merged-chr4-53149903-3	chr4	53149802	53150002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	116.7	107.4	125.5	102.16	119.87	195.36	174.06	125.69	152.43	167.7	165.32	61.71
Merged-chr1-91080542-3	chr1	91080497	91080697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 6 of 22)	intron (NM_008515, intron 6 of 22)	27153.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	191.4	153.18	238.45	177.77	181.64	296.95	191.33	224.5	241.34	218.92	282.9	141.28
Merged-chr1-165237026-3	chr1	165236929	165237129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-69.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	213.61	181.85	229.32	245.74	253.24	275.63	192.66	254.13	268.87	239.0	301.49	156.95
Merged-chr16-95711933-1	chr16	95711833	95712033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011809, intron 4 of 9)	intron (NM_011809, intron 4 of 9)	9526.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.48	2.52	0.0	1.61	0.82	5.64	0.0	1.12	2.56	0.5	0.5	2.51
Merged-chr17-47156393-3	chr17	47156281	47156481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	15439.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	31.5	21.63	43.93	27.75	22.5	41.08	28.9	38.36	17.51	17.07	26.63	17.54
Merged-chr9-110038095-3	chr9	110037994	110038194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205332, intron 8 of 17)	intron (NM_001205332, intron 8 of 17)	-13927.0	NM_001311163	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	24.63	22.64	46.78	55.91	25.36	18.5	26.91	44.58	18.88	17.07	42.71	21.3
Merged-chr5-135468507-3	chr5	135468369	135468569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73923.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	103.37	99.35	83.86	83.26	116.19	147.38	101.31	124.4	109.56	140.09	85.92	81.14
Merged-chr10-13192992-5	chr10	13192889	13193089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181470, intron 1 of 10)	CpG	148.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	55.32	66.65	44.5	39.82	55.64	85.61	63.78	33.2	69.63	86.86	67.33	38.22
Merged-chr9-107554558-3	chr9	107554391	107554591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-92.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	163.13	136.83	138.05	104.17	147.69	173.41	102.97	125.75	183.51	219.42	171.85	129.38
Merged-chr8-70768427-3	chr8	70768332	70768532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008841, exon 16 of 16)	3' UTR (NM_008841, exon 16 of 16)	-1769.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	141.33	127.78	166.0	83.26	151.37	227.97	128.55	142.68	190.0	184.27	199.99	78.63
Merged-chr17-23740409-3	chr17	23740295	23740495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-65.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	52.09	40.5	58.19	62.34	55.64	53.31	39.2	67.26	49.76	61.76	77.38	37.59
Merged-chr10-80399693-3	chr10	80399589	80399789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-158.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	334.75	320.45	390.19	348.71	373.92	479.77	326.86	356.81	453.56	395.16	516.05	286.64
Merged-chr4-132212261-3	chr4	132212170	132212370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	-14.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	85.6	92.56	104.96	82.45	119.87	138.29	58.46	78.28	120.37	151.64	128.64	66.1
Merged-chr4-138068829-3	chr4	138068753	138068953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	69665.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	58.55	39.24	61.61	39.01	45.41	67.73	27.24	49.4	61.17	42.68	66.83	38.85
Merged-chr7-127196066-3	chr7	127195949	127196149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027353)	promoter-TSS (NM_027353)	28.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	88.03	77.72	67.31	58.72	101.87	84.66	42.52	57.95	110.34	100.92	80.9	79.57
Merged-chr3-126695552-3	chr3	126695439	126695639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	98588.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	27.46	41.75	33.66	29.76	27.41	28.85	30.23	64.51	54.48	46.19	65.32	51.69
Merged-chr1-137921791-3	chr1	137921700	137921900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44655.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	23.02	22.39	49.63	66.77	54.0	36.69	36.54	71.94	61.56	37.66	72.36	46.36
Merged-chr7-34912337-3	chr7	34912250	34912450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008820)	promoter-TSS (NM_008820)	-57.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	64.61	55.84	43.93	74.0	90.82	87.17	61.12	80.44	89.3	104.44	136.17	55.45
Merged-chr10-117063466-2	chr10	117063366	117063566	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-91.0	NM_001358767	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	33.52	36.72	30.23	40.22	40.91	36.37	41.85	40.49	39.73	47.7	47.23	53.26
Merged-chr13-80886135-3	chr13	80886048	80886248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	53.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	210.78	178.58	145.47	204.32	227.05	219.19	189.67	224.55	227.17	228.96	222.1	137.21
Merged-chr11-120316223-3	chr11	120316124	120316324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31189.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	95.3	51.81	96.41	74.0	96.96	92.19	64.11	89.02	83.2	66.78	115.57	56.07
Merged-chr2-157561362-3	chr2	157561250	157561450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010923, intron 2 of 2)	intron (NM_010923, intron 2 of 2)	1272.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	39.17	20.63	41.07	34.19	26.18	31.67	22.59	33.2	28.13	21.09	78.89	41.04
Merged-chr7-114254497-5	chr7	114254410	114254610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033370, intron 1 of 21)	CpG	170.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	29.48	32.7	38.79	35.8	26.59	26.97	32.55	31.82	44.25	31.13	49.75	43.86
Merged-chr8-105701125-3	chr8	105701030	105701230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-18.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	22.21	22.39	18.83	20.51	17.59	36.69	12.95	16.29	44.84	26.61	29.14	30.7
Merged-chr10-17948123-3	chr10	17948022	17948222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033432)	promoter-TSS (NM_001033432)	-55.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	115.89	105.14	127.78	111.81	125.19	155.22	110.28	112.85	149.29	155.15	127.63	77.06
Merged-chr18-68301016-1	chr18	68300916	68301116	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	596.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	7.27	6.54	4.56	8.85	5.32	6.9	6.98	7.6	16.33	15.06	13.57	9.08
Merged-chrX-13461783-3	chrX	13461679	13461879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5893.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	62.99	45.28	47.92	35.39	72.0	76.83	42.52	54.53	77.1	71.3	72.86	41.98
Merged-chr16-3908654-3	chr16	3908569	3908769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	-16.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	24.23	19.37	7.99	23.73	18.0	24.77	20.26	19.37	38.94	42.68	40.2	11.59
Merged-chr2-148685966-3	chr2	148685860	148686060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	4840.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	118.31	99.1	89.56	99.75	94.91	134.52	106.29	104.44	147.71	123.02	128.64	91.79
Merged-chr14-20695720-3	chr14	20695609	20695809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168273)	TTS (NM_001168273)	741.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	27.86	41.75	15.4	28.96	38.05	32.93	19.93	28.99	44.25	27.11	39.7	22.56
Merged-chr7-122459374-2	chr7	122459262	122459462	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170237.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.85	1.76	3.42	5.23	29.05	42.02	15.94	30.59	35.01	36.15	35.17	16.29
Merged-chr17-10704332-1	chr17	10704232	10704432	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	L1MEf|LINE|L1	135859.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.04	3.02	7.42	5.23	30.27	29.79	30.23	30.39	3.34	13.56	4.02	5.64
Merged-chr10-117376994-3	chr10	117376884	117377084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-11.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	81.57	66.15	69.03	64.35	74.05	111.0	55.14	98.13	152.83	127.53	143.21	78.32
Merged-chr8-47991097-3	chr8	47990974	47991174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-523.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	62.59	48.54	34.8	47.46	79.37	84.66	69.09	109.63	66.48	64.77	107.53	49.18
Merged-chr3-8991021-3	chr3	8990923	8991123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13181.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	19.38	24.65	31.95	16.89	26.59	45.78	17.61	17.02	48.78	34.14	35.68	17.86
Merged-chr10-80051972-7	chr10	80051860	80052060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-1528.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	21.0	12.32	8.56	12.87	29.86	26.34	24.25	34.26	21.64	23.6	19.6	25.69
Merged-chr10-71344884-3	chr10	71344801	71345001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-52.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	88.03	82.25	91.84	78.43	120.69	114.45	95.67	105.65	127.65	120.0	152.25	95.55
Merged-chr7-98655829-3	chr7	98655721	98655921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172280, intron 1 of 19)	CpG	748.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	30.28	37.73	41.64	37.4	41.73	44.53	24.91	33.25	42.88	43.68	50.75	40.72
Merged-chr8-26697782-3	chr8	26697688	26697888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126635.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	53.7	33.96	86.14	63.15	62.59	51.11	60.12	80.02	82.41	93.89	127.63	74.87
Merged-chr19-37137359-3	chr19	37137277	37137477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290829, intron 3 of 9)	intron (NM_001290829, intron 3 of 9)	-36466.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	23.42	17.86	43.35	49.07	38.46	56.44	25.58	66.14	28.52	17.57	32.66	28.51
Merged-chr6-65144798-3	chr6	65144680	65144880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-50.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	88.43	94.07	100.4	123.88	120.28	91.25	69.09	123.17	128.24	104.44	121.1	95.55
Merged-chr2-70964947-3	chr2	70964858	70965058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001110512, exon 9 of 9)	3' UTR (NM_001110512, exon 9 of 9)	53416.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	59.76	60.87	93.55	82.85	83.87	82.16	71.75	95.61	116.24	89.37	147.23	93.67
Merged-chr19-5088026-3	chr19	5087933	5088133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-505.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	31.9	24.65	38.79	24.53	37.23	58.01	12.95	29.89	50.35	56.24	42.71	37.59
Merged-chr6-116193543-3	chr6	116193456	116193656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-182.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	58.15	59.11	65.03	50.27	68.73	76.83	33.88	58.18	95.39	116.99	98.99	51.38
Merged-chrX-71052381-3	chrX	71052284	71052484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	2128.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	29.07	26.91	20.54	13.27	25.36	31.04	22.59	20.86	20.85	36.15	30.65	15.66
Merged-chr8-4613149-3	chr8	4613035	4613235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-35.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	142.94	106.14	126.07	146.4	162.41	168.39	138.18	238.57	208.88	185.78	289.43	112.78
Merged-chr6-134268236-2	chr6	134268129	134268329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-128100.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	69.45	68.16	91.84	77.22	53.18	98.15	85.37	81.81	5.9	2.01	6.03	1.25
Merged-chr7-143829618-3	chr7	143829514	143829714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007856, intron 1 of 8)	intron (NM_007856, intron 1 of 8)	6447.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	39.57	46.03	33.66	20.91	43.36	42.65	30.23	34.15	52.52	56.74	49.75	44.48
Merged-chr14-31131026-3	chr14	31130939	31131139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2109.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	37.15	33.96	41.07	39.01	37.64	48.92	31.22	37.99	47.8	43.68	85.42	21.3
Merged-chr11-106085352-3	chr11	106085250	106085450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	(T)n|Simple_repeat|Simple_repeat	448.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	30.69	32.2	26.24	26.14	36.0	43.9	18.93	32.66	45.63	36.65	32.16	26.94
Merged-chr3-94974685-3	chr3	94974629	94974829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293716)	promoter-TSS (NM_001293716)	-2.0	NM_001293715	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	50.88	49.05	46.21	55.1	53.59	60.83	36.87	45.14	59.01	58.24	64.32	42.29
Merged-chr17-34837062-3	chr17	34836956	34837156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	37.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	71.47	77.47	42.78	48.26	67.09	96.89	38.86	45.39	127.65	106.45	132.66	54.2
Merged-chr10-80261735-3	chr10	80261590	80261790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-678.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	86.82	71.69	78.72	87.28	83.05	113.83	64.44	66.28	100.11	110.46	128.13	77.69
Merged-chr15-83036325-3	chr15	83036220	83036420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2923.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	31.9	26.91	41.07	41.43	44.59	37.94	30.23	48.56	38.75	41.67	70.35	39.16
Merged-chr2-167698102-3	chr2	167698001	167698201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110334)	TTS (NR_110334)	6924.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	119.12	96.84	146.61	133.13	124.78	131.7	96.33	143.83	126.08	138.58	145.72	117.16
Merged-chr14-25634592-3	chr14	25634493	25634693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31080.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	41.99	30.69	45.07	49.07	46.64	44.21	43.18	56.3	32.45	35.65	53.26	22.56
Merged-chr9-99183478-3	chr9	99183368	99183568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-43257.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	90.45	85.02	94.13	72.8	103.5	152.08	86.36	107.5	145.75	141.59	152.75	62.03
Merged-chr4-154932986-3	chr4	154932889	154933089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4912.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	36.75	38.48	47.35	23.33	47.87	91.88	43.85	28.51	77.5	58.24	63.31	28.51
Merged-chr6-146577690-4	chr6	146577581	146577781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347513)	promoter-TSS (NM_001347513)	154.0	NM_001362108	71177.0	Mm.271774	NM_138757	ENSMUSG00000040250	Ints13	4933424B01Rik|Asun|Spata30	integrator complex subunit 13	protein-coding	77.12	78.48	76.44	71.59	77.32	93.44	96.66	74.19	80.84	108.96	99.99	67.67
Merged-chr2-157279051-3	chr2	157278961	157279161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	-37.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	61.78	63.13	91.27	67.57	89.18	92.82	59.79	79.26	91.07	111.97	122.61	68.61
Merged-chr1-66816558-1	chr1	66816458	66816658	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	CpG	1037.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	6.46	11.32	6.85	6.03	9.0	7.53	10.3	6.2	19.28	20.59	14.07	17.86
Merged-chr8-14842380-3	chr8	14842275	14842475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 14 of 15)	intron (NM_172910, intron 14 of 15)	-46161.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	24.23	15.09	15.97	28.56	26.18	46.72	41.85	53.55	38.16	20.08	53.26	29.76
Merged-chr5-76140480-4	chr5	76140365	76140565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	192.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	107.01	134.82	120.94	134.33	112.91	155.85	164.76	121.91	141.42	174.23	126.63	103.69
Merged-chr4-138972275-3	chr4	138972166	138972366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305423)	promoter-TSS (NM_001305423)	-17.0	NM_001305423	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	32.3	44.02	16.54	33.78	39.68	60.21	29.56	34.91	52.12	54.23	52.76	27.88
Merged-chr16-91523119-3	chr16	91523019	91523219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	4425.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	54.11	47.29	70.17	62.34	78.14	58.64	52.82	59.89	82.61	71.8	79.39	53.26
Merged-chrX-155728584-3	chrX	155728484	155728684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-105257.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	18.17	14.34	21.11	20.51	30.27	22.58	18.6	25.63	25.37	32.64	46.23	20.99
Merged-chr11-94392936-3	chr11	94392839	94393039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029600)	promoter-TSS (NM_029600)	37.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	30.69	26.66	23.39	36.2	35.59	29.79	29.23	37.79	21.64	23.6	30.65	14.41
Merged-chr5-135934005-3	chr5	135933901	135934101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	640.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	23.82	19.12	33.09	19.31	29.86	28.54	11.96	23.64	34.03	37.16	27.64	27.25
Merged-chr15-58872671-3	chr15	58872618	58872818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026642)	promoter-TSS (NM_026642)	69.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	21.8	18.86	21.11	27.35	18.0	21.64	11.29	14.36	19.08	14.56	25.63	18.17
Merged-chr9-42471397-3	chr9	42471281	42471481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173038, intron 1 of 7)	intron (NM_173038, intron 1 of 7)	877.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	19.79	10.31	20.54	43.84	24.55	26.65	10.96	32.1	23.8	20.08	37.18	24.43
Merged-chr11-83473016-3	chr11	83472945	83473145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-63.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	128.41	92.81	86.14	101.76	124.37	167.13	65.11	110.22	186.07	163.69	184.91	119.35
Merged-chr4-126162764-3	chr4	126162660	126162860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025856)	promoter-TSS (NM_025856)	-95.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	124.77	119.22	100.97	77.62	101.46	178.74	75.73	73.01	137.48	141.09	115.57	41.04
Merged-chr5-92348383-1	chr5	92348283	92348483	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021274, intron 1 of 3)	intron (NM_021274, intron 1 of 3)	506.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	14.54	36.72	14.83	2.82	2.86	27.91	4.65	1.15	22.62	30.63	7.54	3.76
Merged-chr10-14186781-3	chr10	14186677	14186877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	220398.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	91.26	69.92	80.43	96.53	87.55	111.32	75.07	95.33	82.02	87.37	91.95	47.62
Merged-chr1-180850886-3	chr1	180850790	180850990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-261.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	166.36	181.85	172.85	173.35	150.55	217.31	113.6	135.9	275.36	294.74	396.46	177.94
Merged-chr12-24710335-3	chr12	24710235	24710435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	2081.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	33.52	36.47	31.38	38.21	42.14	35.75	18.93	19.51	50.94	54.23	50.25	35.71
Merged-chr4-123962626-3	chr4	123962537	123962737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	45204.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	44.42	53.07	52.48	37.4	39.27	51.74	59.13	58.32	57.63	35.15	38.19	39.78
Merged-chr2-167773115-3	chr2	167773016	167773216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81939.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	121.54	90.05	163.15	138.36	141.55	154.28	157.45	160.68	162.27	160.17	231.14	141.91
Merged-chr9-24899847-1	chr9	24899747	24899947	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74361.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	2.42	5.53	1.14	1.61	25.36	20.7	13.95	21.17	2.95	3.01	8.04	14.41
Merged-chr12-84409003-3	chr12	84408912	84409112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007647)	promoter-TSS (NM_007647)	17.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	43.61	31.44	37.65	37.81	42.55	46.41	15.94	42.2	52.32	65.78	89.94	36.97
Merged-chr11-34012173-3	chr11	34012064	34012264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18971.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	63.4	69.42	71.31	51.48	58.5	83.41	66.43	58.09	74.94	77.83	82.91	56.39
Merged-chr16-31948567-3	chr16	31948482	31948682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	36.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	50.07	52.07	36.51	44.24	50.73	55.82	30.23	40.35	64.32	74.31	63.82	28.19
Merged-chr3-95160352-3	chr3	95160237	95160437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-83.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	67.84	62.13	94.13	78.03	98.59	108.18	65.44	97.54	76.31	60.25	99.49	53.26
Merged-chr18-61638141-3	chr18	61638027	61638227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1526.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	34.32	32.95	21.11	17.7	38.05	56.13	22.92	31.68	48.98	50.71	39.7	25.06
Merged-chr9-65740784-2	chr9	65740678	65740878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64230.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	18.98	26.16	31.95	20.91	29.46	43.27	16.61	16.54	2.56	4.02	1.51	4.07
Merged-chr10-111473183-3	chr10	111473090	111473290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-37.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	167.58	122.49	188.25	145.6	178.78	213.23	143.83	181.82	208.69	192.81	264.31	123.43
Merged-chr8-84990537-3	chr8	84990453	84990653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-42.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	98.93	86.02	144.33	95.72	109.64	151.77	104.3	88.57	135.32	142.1	141.2	84.9
Merged-chr15-38515413-3	chr15	38515303	38515503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	3863.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	15.75	22.64	29.09	24.53	18.0	24.77	29.23	37.29	31.08	21.09	38.69	25.37
Merged-chr8-70765063-1	chr8	70764963	70765163	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023065, exon 2 of 8)	exon (NM_023065, exon 2 of 8)	1600.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	2.02	7.04	0.0	4.83	2.86	5.33	9.3	5.3	7.67	7.53	4.52	5.33
Merged-chr6-66535236-3	chr6	66535080	66535280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	-41.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	157.48	196.69	193.38	257.01	231.14	247.72	211.26	262.88	299.75	298.25	432.64	214.59
Merged-chr7-16326388-3	chr7	16326289	16326489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019748)	TTS (NM_019748)	16806.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	21.8	34.21	38.79	15.28	20.05	62.09	20.26	25.68	37.17	67.78	51.25	26.63
Merged-chr5-65973398-3	chr5	65973298	65973498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081104, intron 4 of 4)	LTR84a|LTR|ERVL	6274.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	49.67	53.58	66.74	48.26	72.82	98.15	54.14	70.99	88.9	108.96	69.85	53.88
Merged-chr10-100059448-3	chr10	100059337	100059537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347156, intron 2 of 8)	intron (NM_001347156, intron 2 of 8)	43616.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	52.49	53.83	102.11	72.4	86.73	58.01	92.34	170.1	127.65	121.51	95.97	79.57
Merged-chr16-97992669-3	chr16	97992565	97992765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4650.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	21.4	16.1	15.4	19.31	24.14	21.01	12.29	16.77	39.73	34.65	31.66	20.05
Merged-chr6-33515506-3	chr6	33515404	33515604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	266376.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	49.67	42.51	33.09	32.98	54.0	47.35	36.87	54.93	55.86	48.2	42.21	23.18
Merged-chr6-17688925-3	chr6	17688803	17689003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5091.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	60.97	47.79	59.33	67.97	65.05	50.8	56.14	59.66	95.59	81.84	69.34	45.74
Merged-chr2-11425821-1	chr2	11425721	11425921	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27321.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.81	2.01	1.14	1.61	1.23	2.51	1.99	4.63	3.74	2.01	3.01	2.19
Merged-chr15-63500578-3	chr15	63500474	63500674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20966.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	47.65	26.16	87.28	108.59	68.32	43.9	100.32	120.7	52.91	36.15	76.88	41.66
Merged-chr14-102883508-3	chr14	102883384	102883584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99148.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	28.27	16.35	32.52	33.38	24.96	18.81	19.27	37.6	39.14	24.1	65.32	27.25
Merged-chrX-38364856-3	chrX	38364744	38364944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	48722.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	18.57	10.82	19.97	23.33	30.27	31.98	18.6	11.24	27.34	23.6	21.1	20.99
Merged-chr3-15179675-3	chr3	15179560	15179760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152642.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	39.17	40.24	73.02	65.56	43.36	42.02	36.21	58.54	54.48	37.16	58.79	21.62
Merged-chr3-95882425-3	chr3	95882303	95882503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-175.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	102.16	82.0	79.86	76.02	95.32	115.71	77.06	106.04	126.27	152.64	127.63	97.11
Merged-chr12-108792879-3	chr12	108792788	108792988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-423.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	127.2	126.27	126.07	137.15	162.41	193.47	131.87	139.94	250.58	208.88	313.55	139.72
Merged-chr19-45326633-1	chr19	45326533	45326733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-37101.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	16.15	12.58	1.14	8.04	3.27	10.98	3.65	2.61	6.49	9.04	9.04	3.76
Merged-chr3-135212518-3	chr3	135212396	135212596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-67.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	83.18	87.03	78.15	92.91	102.68	93.44	73.74	104.3	117.62	122.01	136.17	74.24
Merged-chr2-167381820-3	chr2	167381716	167381916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32638.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	29.88	20.63	63.89	37.81	47.87	65.22	40.86	41.89	56.45	41.17	55.78	28.51
Merged-chr17-33089459-3	chr17	33089372	33089572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001024950, exon 1 of 4)	5' UTR (NM_001024950, exon 1 of 4)	105.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	30.69	42.51	46.78	48.26	37.23	50.17	44.84	38.92	39.14	53.73	46.23	28.82
Merged-chr2-27405167-5	chr2	27405052	27405252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	22456.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	18.57	30.43	16.54	11.26	18.82	31.98	26.24	10.77	19.28	16.57	17.59	13.78
Merged-chr17-46552942-3	chr17	46552826	46553026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105942)	TTS (NR_105942)	963.0	NR_105942	102466778.0		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	33.52	30.18	40.5	48.26	36.82	45.15	22.92	28.6	54.88	36.65	59.29	33.52
Merged-chr5-43233732-3	chr5	43233638	43233838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	275.0	NM_001177379	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	91.26	67.66	108.39	109.0	101.87	86.86	109.95	142.09	128.63	122.51	181.9	84.27
Merged-chr5-134678246-3	chr5	134678117	134678317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	31.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	40.78	48.54	48.49	38.21	60.14	49.54	49.83	51.2	50.75	53.22	64.32	33.21
Merged-chrX-96239796-3	chrX	96239699	96239899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030718)	promoter-TSS (NR_030718)	-127.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	96.91	80.24	59.33	107.39	75.68	88.74	66.1	66.9	78.68	70.8	79.89	43.23
Merged-chr2-59160229-3	chr2	59160119	59160319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	464.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	37.15	32.7	34.8	36.2	21.27	40.14	30.23	47.55	49.17	20.59	45.73	29.76
Merged-chr7-141328110-3	chr7	141327999	141328199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	-31.0	NM_001141950	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	102.97	96.34	56.48	79.64	87.55	94.39	48.5	48.22	126.86	137.58	123.11	74.24
Merged-chr3-108085443-3	chr3	108085344	108085544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-18.0	NM_001289720	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	28.67	28.93	34.23	24.13	47.05	31.36	26.57	52.49	47.8	53.73	56.28	35.4
Merged-chr11-116146266-3	chr11	116146160	116146360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172571, intron 26 of 30)	intron (NM_172571, intron 26 of 30)	-7392.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	24.63	30.43	58.19	44.64	42.55	36.69	18.27	42.76	32.65	25.11	37.69	27.88
Merged-chr5-99216880-3	chr5	99216785	99216985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145839)	TTS (NM_145839)	36042.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	98.93	109.16	93.55	88.08	88.78	158.67	77.4	79.32	107.39	131.05	145.72	63.59
Merged-chr11-48800346-3	chr11	48800220	48800420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-40.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	33.92	21.13	29.09	22.12	38.05	47.66	21.92	28.18	82.61	80.84	44.72	46.68
Merged-chr15-59650624-3	chr15	59650519	59650719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1965.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	19.38	21.38	35.94	30.16	64.23	63.34	37.54	57.76	41.7	52.22	80.9	36.65
Merged-chr7-145284007-3	chr7	145283928	145284128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-17.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	80.36	77.47	110.1	97.33	91.64	101.6	90.02	104.08	139.06	129.54	165.82	61.09
Merged-chr3-101604716-3	chr3	101604604	101604804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	3.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	182.11	163.24	169.43	196.68	147.28	211.35	170.74	192.11	205.15	187.29	277.37	129.38
Merged-chr5-100416293-3	chr5	100416184	100416384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-50.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	147.79	138.84	146.61	143.18	182.05	145.18	96.66	143.5	176.23	171.72	209.03	119.67
Merged-chrX-48146428-3	chrX	48146330	48146530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028773)	promoter-TSS (NM_028773)	-6.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	27.46	19.62	29.66	28.15	37.64	47.98	22.26	38.52	41.3	40.67	49.24	22.56
Merged-chr3-58520481-3	chr3	58520387	58520587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-5334.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	78.34	60.87	65.6	65.56	60.14	66.48	56.8	67.57	88.51	67.28	75.37	48.24
Merged-chr2-37359263-3	chr2	37359175	37359375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026176)	promoter-TSS (NM_026176)	57.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	58.95	60.87	50.2	63.55	57.27	82.47	39.86	65.97	96.77	107.45	108.03	45.11
Merged-chr5-88565640-5	chr5	88565466	88565666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289774, intron 1 of 17)	CpG	526.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	26.25	21.63	17.68	16.49	28.23	24.46	27.24	35.3	25.37	48.2	44.72	25.69
Merged-chr11-75550039-3	chr11	75549934	75550134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-1395.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	119.93	105.64	82.72	102.96	111.69	152.08	84.37	92.44	149.68	98.91	133.66	67.35
Merged-chr6-100143951-3	chr6	100143852	100144052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143406.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	37.55	33.2	23.39	18.5	25.77	35.75	23.58	26.86	26.55	29.12	22.11	14.72
Merged-chr6-108532155-3	chr6	108532044	108532244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	42401.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	55.32	34.46	100.4	96.53	66.27	51.43	80.05	105.84	65.3	40.17	88.94	46.68
Merged-chr3-133545191-3	chr3	133545117	133545317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-827.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	57.34	28.42	61.04	76.42	53.18	60.52	62.45	73.18	57.63	75.32	82.91	58.89
Merged-chr11-69785020-3	chr11	69784918	69785118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029348)	TTS (NM_029348)	10919.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	26.65	26.91	43.93	27.35	39.27	41.08	22.59	40.57	33.04	29.62	43.21	17.23
Merged-chr9-32539456-3	chr9	32539355	32539555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1997.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	41.19	26.66	37.08	34.99	67.91	61.46	51.82	86.58	56.84	62.26	75.87	38.85
Merged-chr6-51469984-3	chr6	51469896	51470096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	-102.0	NM_016806	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	154.25	162.99	130.63	111.41	214.78	222.95	175.39	124.4	199.25	169.71	108.54	96.17
Merged-chr5-115559399-3	chr5	115559297	115559497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-70.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	198.26	184.87	187.11	199.89	187.78	251.17	145.49	146.05	200.43	213.9	224.61	104.32
Merged-chr13-94285412-3	chr13	94285288	94285488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-107.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	39.98	39.24	30.8	36.6	45.82	34.18	32.88	42.7	49.96	38.66	56.28	28.82
Merged-chr17-43554009-1	chr17	43553909	43554109	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-10370.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	5.65	3.52	10.27	2.82	21.27	25.71	14.62	20.89	5.31	6.03	2.51	4.7
Merged-chr12-108937697-2	chr12	108937591	108937791	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	43419.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	7.67	3.27	4.56	11.66	29.05	38.26	32.22	46.63	20.06	21.09	34.17	12.53
Merged-chr9-90258279-3	chr9	90258182	90258382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	12487.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	51.28	32.45	71.31	96.13	71.18	42.65	80.72	87.7	58.61	51.72	96.48	55.13
Merged-chr9-123769636-3	chr9	123769542	123769742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	2431.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	63.4	58.61	74.73	38.21	64.64	65.54	45.84	53.05	51.73	51.72	52.76	29.76
Merged-chr18-5764894-3	chr18	5764802	5765002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	172255.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	57.34	66.15	98.12	53.09	60.96	69.3	54.14	57.59	99.92	84.86	103.01	40.41
Merged-chr5-120613369-2	chr5	120613264	120613464	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029096)	promoter-TSS (NM_029096)	234.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	71.88	55.84	80.43	53.09	105.55	112.57	65.44	72.5	101.69	98.91	118.59	70.8
Merged-chr10-82859190-3	chr10	82859097	82859297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-9.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	214.82	223.61	178.55	136.75	200.46	250.54	185.02	150.95	265.53	250.05	279.38	164.46
Merged-chr2-165320668-3	chr2	165320562	165320762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001302752, exon 1 of 21)	5' UTR (NM_001302752, exon 1 of 21)	164.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	20.59	11.82	28.52	30.97	19.64	17.25	26.24	32.55	18.29	24.6	22.61	21.93
Merged-chrX-142190523-3	chrX	142190419	142190619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007576, intron 1 of 19)	intron (NM_001007576, intron 1 of 19)	6417.0	NM_001007576	245650.0	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	23.02	21.63	18.83	34.59	27.82	41.08	20.59	35.24	36.58	29.12	37.18	21.3
Merged-chr9-70585382-3	chr9	70585289	70585489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152142, intron 15 of 19)	intron (NR_152142, intron 15 of 19)	42674.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	29.07	30.18	31.95	26.55	23.32	42.02	35.21	33.11	37.17	30.63	33.16	24.43
Merged-chr1-39503354-3	chr1	39503251	39503451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24596.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	58.55	58.86	63.32	38.21	48.27	93.44	67.43	52.91	61.56	47.2	40.7	22.87
Merged-chr12-52398073-3	chr12	52397984	52398184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82525.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	30.69	17.61	27.95	59.93	37.64	26.34	65.44	50.41	42.09	27.62	56.28	16.6
Merged-chr15-58140968-1	chr15	58140868	58141068	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	-398.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	8.88	5.79	6.28	4.83	16.36	13.48	13.95	16.51	7.47	13.56	9.55	18.48
Merged-chr8-120113583-1	chr8	120113483	120113683	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-569.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	36.75	30.43	43.35	39.82	33.55	52.05	80.72	78.22	75.13	66.28	74.87	42.92
Merged-chr5-118404604-3	chr5	118404487	118404687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-156132.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	75.91	90.55	93.55	92.91	134.6	266.22	161.77	174.73	146.73	113.48	198.98	104.32
Merged-chr14-30549178-3	chr14	30549147	30549347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009388, exon 1 of 14)	5' UTR (NM_009388, exon 1 of 14)	116.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	47.65	54.83	66.17	67.17	46.64	58.01	75.4	48.98	52.12	42.18	70.35	53.88
Merged-chr4-141953038-3	chr4	141952946	141953146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 12 of 31)	MER2|DNA|TcMar-Tigger	-29946.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	69.86	66.65	83.86	61.13	96.55	102.22	63.78	79.71	114.47	107.95	120.09	60.46
Merged-chr5-140597332-3	chr5	140597214	140597414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	15.75	29.18	26.81	21.32	54.41	47.04	34.55	40.04	37.17	32.64	40.7	16.92
Merged-chr15-78257405-3	chr15	78257307	78257507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 7 of 9)	RSINE1|SINE|B4	12596.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	35.13	19.62	36.51	26.55	35.59	35.43	35.54	33.25	30.88	27.62	42.21	23.49
Merged-chr19-4510300-3	chr19	4510216	4510416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-156.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	210.78	218.07	205.36	216.79	235.23	307.93	190.67	184.71	254.91	261.6	264.81	166.97
Merged-chr4-59783435-2	chr4	59783340	59783540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013577, intron 1 of 4)	CpG	415.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	36.34	27.17	51.91	32.58	23.32	35.43	12.29	27.08	46.03	28.12	36.68	22.87
Merged-chr1-171346276-3	chr1	171346169	171346369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012049)	promoter-TSS (NM_012049)	594.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	33.11	26.41	29.09	27.35	23.73	36.06	14.95	23.24	24.0	27.62	35.68	19.74
Merged-chr1-16228421-3	chr1	16228314	16228514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025303)	TTS (NM_025303)	122532.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	106.6	101.62	120.94	74.81	135.82	125.74	89.69	102.39	151.25	120.0	160.79	76.44
Merged-chr16-75887371-3	chr16	75887257	75887457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	21909.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	48.46	49.8	82.72	40.22	64.23	91.56	54.81	62.97	87.13	52.72	134.67	38.53
Merged-chr3-116662371-1	chr3	116662271	116662471	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 1 of 11)	CpG	306.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	54.92	43.01	53.62	44.24	56.05	60.21	51.15	40.57	60.78	68.29	91.45	53.57
Merged-chr13-52078740-3	chr13	52078626	52078826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18015.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	58.55	55.08	60.47	42.63	67.5	146.12	63.44	56.07	86.15	89.88	83.91	29.76
Merged-chr4-47315649-3	chr4	47315530	47315730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37592.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	93.28	97.09	116.37	127.9	126.82	119.47	138.18	166.32	117.82	99.92	150.74	79.88
Merged-chr11-80043582-3	chr11	80043466	80043666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1M8|LINE|L1	37425.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	91.26	104.64	86.71	47.06	87.96	145.18	52.15	45.56	123.13	132.56	99.99	69.86
Merged-chr6-120822823-3	chr6	120822725	120822925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-127.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	103.78	131.8	77.01	87.68	110.46	124.8	70.42	77.58	150.66	151.13	129.14	68.29
Merged-chr17-53587252-3	chr17	53587154	53587354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3128.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	60.57	35.21	66.17	56.71	95.73	66.48	78.06	98.41	88.31	119.0	107.53	65.16
Merged-chr15-66919580-3	chr15	66919473	66919673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018865, exon 5 of 5)	3' UTR (NM_018865, exon 5 of 5)	28180.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	22.21	23.9	29.66	29.76	26.59	24.15	20.59	40.23	25.18	28.62	38.19	26.94
Merged-chr2-124755448-3	chr2	124755348	124755548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101867.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	39.17	45.53	54.19	45.45	41.32	55.82	41.85	68.92	58.81	48.2	56.28	36.03
Merged-chr14-61439497-1	chr14	61439397	61439597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008466, intron 1 of 16)	CpG	450.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	16.96	16.85	13.69	19.31	18.41	16.93	18.93	11.83	17.9	15.57	10.55	10.96
Merged-chr12-84023280-3	chr12	84023186	84023386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	13784.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	50.88	54.08	53.05	55.1	68.73	99.09	63.44	62.61	80.84	81.84	78.89	69.55
Merged-chr1-172126730-3	chr1	172126636	172126836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159525)	promoter-TSS (NM_001159525)	-19.0	NM_001356513	19298.0	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	44.82	36.22	28.52	28.15	48.68	48.6	25.58	41.44	52.91	55.73	60.8	30.07
Merged-chr12-55824222-3	chr12	55824127	55824327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2711.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	27.05	39.24	35.37	43.04	33.55	46.72	39.53	41.27	41.11	48.2	33.67	22.87
Merged-chr7-25269874-3	chr7	25269767	25269967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2168.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	36.75	23.39	31.38	41.83	43.36	55.5	32.55	55.29	33.44	27.62	51.25	23.49
Merged-chr16-43951816-3	chr16	43951698	43951898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	27252.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	48.86	74.7	78.72	92.1	65.46	73.06	48.16	90.87	62.15	69.29	113.56	35.71
Merged-chr9-70421577-3	chr9	70421483	70421683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	-29.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	31.5	17.1	21.11	20.91	33.14	33.55	15.61	13.4	34.22	39.67	42.21	26.94
Merged-chr7-19345375-3	chr7	19345279	19345479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127324, intron 1 of 6)	CpG	308.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	15.75	19.12	21.68	22.52	32.73	29.16	13.62	22.23	43.66	28.62	34.17	25.69
Merged-chr14-22019599-5	chr14	22019513	22019713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028275)	promoter-TSS (NM_028275)	-99.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	36.34	56.09	35.37	34.19	46.23	77.14	54.48	33.95	48.39	56.24	52.26	27.57
Merged-chr12-117479191-3	chr12	117479083	117479283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37296.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	59.76	54.33	89.56	71.59	70.37	83.1	59.13	108.36	96.18	87.37	121.1	54.2
Merged-chr4-10874046-3	chr4	10873920	10874120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-478.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	20.59	16.6	21.68	20.91	40.91	23.52	12.95	20.19	41.3	34.14	25.12	22.24
Merged-chr17-35972299-2	chr17	35972199	35972399	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145487)	TTS (NM_145487)	-2549.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.81	1.26	0.0	0.8	14.32	34.18	4.98	11.58	29.31	24.1	19.6	11.9
Merged-chr3-95139753-3	chr3	95139656	95139856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106175).2	promoter-TSS (NR_106175).2	-570.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	20.59	11.32	31.95	26.14	31.91	14.11	11.29	35.5	48.78	36.65	46.23	36.34
Merged-chr7-34302089-3	chr7	34301949	34302149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16440.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	16.56	9.31	19.4	22.12	17.59	19.13	9.97	21.98	14.16	3.51	17.59	11.59
Merged-chr13-108044450-3	chr13	108044344	108044544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-30.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	125.58	114.95	132.35	122.27	136.23	127.31	102.31	105.67	167.97	141.59	181.4	90.85
Merged-chr6-72141374-3	chr6	72141269	72141469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-18172.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	50.88	23.39	57.05	47.86	49.91	50.8	83.04	121.35	47.01	40.17	83.41	58.58
Merged-chr17-57275667-3	chr17	57275601	57275801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3399.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	26.65	48.54	43.35	34.59	37.23	41.71	38.53	20.41	47.99	47.2	28.14	29.13
Merged-chr12-69157645-3	chr12	69157528	69157728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009093)	TTS (NM_009093)	1558.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	27.86	25.66	35.37	40.22	27.82	22.26	40.19	39.81	29.7	25.61	43.21	25.69
Merged-chr4-3648436-3	chr4	3648340	3648540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8066.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	32.3	24.9	22.25	18.1	20.86	25.09	25.24	31.54	31.27	36.65	66.33	32.58
Merged-chr2-168540041-3	chr2	168539941	168540141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	L2|LINE|L2	50324.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	29.88	36.47	29.66	39.42	41.32	59.58	32.22	53.75	28.13	19.58	43.21	25.37
Merged-chr7-110710767-3	chr7	110710648	110710848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-57458.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	38.36	40.75	61.04	22.12	72.41	90.31	59.79	69.11	116.24	101.93	122.1	77.38
Merged-chr7-43346376-5	chr7	43346277	43346477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-4964.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	16.56	13.83	17.11	22.52	29.05	11.6	30.56	28.37	26.16	34.65	31.15	23.49
Merged-chr16-33062419-3	chr16	33062300	33062500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172823)	promoter-TSS (NM_172823)	-121.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	122.35	127.27	172.85	136.75	144.82	156.47	123.9	150.59	166.0	160.67	226.62	100.56
Merged-chr7-16311711-3	chr7	16311656	16311856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	2173.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	26.65	21.63	29.09	22.52	35.18	30.1	31.89	23.78	24.19	21.09	35.17	16.6
Merged-chr15-50698296-1	chr15	50698196	50698396	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190753.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	21.0	13.08	34.23	21.72	31.09	34.18	25.58	25.35	38.75	31.13	46.23	26.63
Merged-chr5-108131968-3	chr5	108131859	108132059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028481)	promoter-TSS (NM_028481)	661.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	39.98	27.17	69.6	47.06	59.73	61.15	40.52	81.67	88.71	70.8	95.97	58.27
Merged-chr3-69669738-3	chr3	69669637	69669837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-52318.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	23.42	21.63	26.24	32.18	39.68	44.21	20.26	33.45	46.81	39.67	52.26	32.89
Merged-chr5-124445359-3	chr5	124445268	124445468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-131.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	24.23	29.18	27.95	21.72	42.96	39.2	25.24	35.24	40.71	35.15	62.81	20.99
Merged-chr10-7681077-3	chr10	7680981	7681181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	54.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	40.38	63.39	45.07	51.88	51.14	55.19	84.37	55.54	50.35	48.2	49.75	22.56
Merged-chr9-59751101-5	chr9	59750964	59751164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172071)	promoter-TSS (NM_001172071)	-110.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	61.38	94.32	85.0	102.96	61.77	113.2	84.04	64.43	79.27	106.95	102.0	82.39
Merged-chr7-99435007-3	chr7	99434912	99435112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-30992.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	58.55	35.97	26.24	55.91	70.77	40.14	35.21	57.36	36.19	43.68	48.74	30.07
Merged-chr5-105415683-3	chr5	105415599	105415799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-76.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	110.64	108.91	99.26	63.95	146.46	141.73	93.01	118.26	149.68	165.69	199.99	67.35
Merged-chr16-17891795-3	chr16	17891714	17891914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-86.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	113.06	100.11	115.8	125.08	137.87	131.39	83.37	137.69	155.58	143.1	212.55	98.99
Merged-chr2-12406887-3	chr2	12406787	12406987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355537, intron 2 of 13)	intron (NM_001355537, intron 2 of 13)	12573.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	59.76	61.12	45.07	69.98	42.14	45.15	41.85	70.07	90.08	71.3	88.44	57.01
Merged-chr7-45628932-3	chr7	45628843	45629043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028544, exon 3 of 12)	exon (NM_028544, exon 3 of 12)	1406.0	NM_028544	69903.0	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	52.09	56.34	42.21	31.77	50.32	60.21	29.56	50.69	62.94	52.72	75.87	44.8
Merged-chr3-88138419-3	chr3	88138328	88138528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3944.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	74.3	49.8	56.48	57.11	51.14	75.57	44.84	59.27	95.59	88.87	78.39	54.82
Merged-chr9-85357592-3	chr9	85357510	85357710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30460.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	37.55	18.36	34.23	36.6	38.46	28.85	22.26	31.46	55.86	38.66	64.82	28.51
Merged-chr2-70661445-3	chr2	70661336	70661536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-73.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	184.94	178.58	240.73	178.98	151.37	174.66	97.99	182.55	151.06	167.2	189.44	99.31
Merged-chr3-96220888-3	chr3	96220779	96220979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	1.0	NM_175662	319176.0	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	81.97	80.49	97.55	103.37	95.32	95.64	58.13	61.51	127.45	143.6	168.83	96.49
Merged-chr2-38481323-3	chr2	38481225	38481425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30372.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	21.8	20.88	35.94	22.52	36.0	25.4	12.62	30.14	37.76	22.59	38.69	25.69
Merged-chr11-116843528-3	chr11	116843457	116843657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	42.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	202.71	201.22	192.24	141.98	196.78	241.45	178.04	165.11	227.17	266.62	219.58	124.99
Merged-chr5-122392312-3	chr5	122392202	122392402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	424.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	20.19	18.36	17.11	9.25	18.82	26.03	16.94	12.98	25.57	27.11	29.14	19.74
Merged-chr10-42278152-3	chr10	42278039	42278239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-1005	-1397.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	75.51	68.92	95.84	72.4	77.32	73.06	61.78	74.41	99.33	78.33	86.93	72.05
Merged-chr9-119444940-3	chr9	119444837	119445037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172456)	promoter-TSS (NM_172456)	-23.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	54.92	60.12	66.17	45.45	58.91	80.9	32.88	53.58	52.12	68.29	99.49	25.37
Merged-chr7-28765359-3	chr7	28765270	28765470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306222, intron 1 of 5)	L2a|LINE|L2	1274.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	93.68	109.92	79.29	60.33	94.09	136.4	59.79	61.32	126.08	147.12	104.01	56.7
Merged-chr11-83616761-3	chr11	83616653	83616853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-23666.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	18.98	12.83	26.81	22.12	63.41	66.16	74.74	87.9	26.55	33.14	63.82	31.33
Merged-chr7-43920775-3	chr7	43920660	43920860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13011.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	34.73	45.28	46.21	49.07	48.27	64.6	70.42	52.37	68.25	62.26	113.06	56.39
Merged-chr11-69417706-3	chr11	69417622	69417822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4047.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	42.4	49.55	36.51	28.56	43.77	65.85	21.59	37.96	59.6	77.32	76.88	32.27
Merged-chr2-32081510-3	chr2	32081416	32081616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	2189.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	95.7	65.15	82.72	79.23	99.41	92.5	75.07	81.06	110.54	101.43	121.6	60.15
Merged-chr4-150349840-3	chr4	150349723	150349923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	(TCC)n|Simple_repeat|Simple_repeat	67907.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	32.71	24.65	37.08	29.76	49.09	48.29	22.92	49.82	41.11	40.17	33.67	27.88
Merged-chr12-10390781-3	chr12	10390681	10390881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	1.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	132.85	120.73	146.61	157.66	164.05	174.66	178.38	206.38	190.59	154.65	242.7	124.68
Merged-chr18-50024212-3	chr18	50024138	50024338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-6746.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	136.89	94.07	140.33	113.82	136.23	139.54	102.64	128.78	144.76	151.64	189.44	87.71
Merged-chr8-111643472-3	chr8	111643395	111643595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	52.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	63.4	60.37	60.47	61.54	77.32	79.96	46.84	57.7	72.18	82.85	96.48	54.2
Merged-chr3-90491007-3	chr3	90490903	90491103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	10.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	63.4	83.26	94.7	64.35	74.46	89.37	75.07	73.26	72.97	93.39	109.04	57.33
Merged-chr2-148498047-1	chr2	148497947	148498147	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54512.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	10.09	4.02	3.42	6.84	4.91	3.76	17.94	12.03	4.13	5.02	8.04	4.7
Merged-chr6-30048424-2	chr6	30048344	30048544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164226, intron 1 of 11)	CpG	456.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	17.36	28.93	23.96	24.94	12.27	30.1	27.24	17.72	20.65	18.08	21.61	14.72
Merged-chr4-149485252-3	chr4	149485152	149485352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	-14.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	47.24	36.97	62.75	52.29	60.14	55.5	38.2	59.5	51.53	48.7	75.87	41.98
Merged-chr11-96829541-3	chr11	96829449	96829649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-47.0	NM_001130450	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	44.42	48.54	50.77	43.84	33.14	38.26	23.25	30.95	41.7	48.7	53.77	32.27
Merged-chr6-128834632-3	chr6	128834544	128834744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-8329.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	89.24	115.45	115.23	84.06	106.78	138.91	109.62	97.15	124.9	119.5	129.64	47.62
Merged-chr2-129338435-3	chr2	129338333	129338533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28461.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	77.12	44.52	108.39	76.02	62.59	98.46	69.76	80.24	105.03	125.02	164.31	92.73
Merged-chr5-121220179-3	chr5	121220082	121220282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181421)	promoter-TSS (NM_181421)	-37.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	44.82	49.3	35.37	33.78	38.05	45.78	14.95	35.02	50.16	55.23	51.76	34.15
Merged-chr6-97294261-3	chr6	97294168	97294368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41488.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	35.94	30.18	22.25	22.12	32.32	67.42	27.9	27.84	44.84	49.71	35.17	20.68
Merged-chr17-86162098-3	chr17	86161991	86162191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5694.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	33.52	21.13	27.38	30.16	17.18	28.85	10.96	25.29	43.47	27.11	66.83	17.23
Merged-chr16-65562717-3	chr16	65562628	65562828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026879)	promoter-TSS (NM_026879)	-31.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	89.64	60.12	81.58	98.14	121.5	76.2	72.41	110.8	118.41	110.97	130.65	65.79
Merged-chr9-44335166-2	chr9	44335052	44335252	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010436, exon 1 of 1)	exon (NM_010436, exon 1 of 1)	437.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	10.9	15.09	12.55	19.71	20.05	22.26	8.97	14.5	33.24	26.61	22.61	23.81
Merged-chr16-78236976-3	chr16	78236902	78237102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18452.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	38.76	28.67	49.63	45.05	68.32	93.13	68.76	110.52	92.05	69.79	89.94	56.7
Merged-chr11-79704531-3	chr11	79704425	79704625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7444.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	95.3	89.29	86.71	76.82	95.73	115.08	61.45	84.2	129.03	107.45	93.46	64.85
Merged-chr17-56935575-3	chr17	56935479	56935679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-191.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	163.54	122.49	154.59	132.32	160.78	175.91	116.59	139.01	175.64	227.96	223.6	111.52
Merged-chr10-60958165-3	chr10	60958078	60958278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-2545.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	33.52	25.4	22.82	38.61	53.18	75.26	40.86	64.57	73.17	79.83	53.77	60.46
Merged-chr11-3155966-2	chr11	3155885	3156085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 12 of 32)	intron (NM_030207, intron 12 of 32)	31964.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	21.0	13.58	11.41	14.48	20.86	16.93	12.95	10.4	0.0	0.0	0.0	0.0
Merged-chr9-105408264-1	chr9	105408164	105408364	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	7476.0	NM_001164828	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	0.81	1.51	3.42	0.8	1.64	1.88	0.0	1.71	16.92	17.07	26.63	15.98
Merged-chrX-12591583-3	chrX	12591484	12591684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	3825.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	25.84	24.15	35.37	43.04	26.59	22.26	42.52	42.31	14.36	20.59	20.1	14.72
Merged-chr12-25216977-3	chr12	25216890	25217090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	87816.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	18.57	17.1	36.51	23.73	24.55	21.01	16.94	33.73	23.8	20.08	35.17	26.63
Merged-chr11-54091868-3	chr11	54091750	54091950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9074.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	68.24	82.5	71.31	77.62	73.23	98.78	60.12	73.15	100.7	116.99	98.49	68.92
Merged-chr2-45185408-3	chr2	45185307	45185507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67965.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	25.44	15.59	21.11	17.29	15.14	24.77	14.95	28.57	21.24	26.61	24.62	15.98
Merged-chr7-104505887-2	chr7	104505783	104505983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	1966.0	NM_199146	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	52.9	58.86	51.34	67.17	78.96	85.61	49.83	49.01	1.97	0.0	0.0	0.31
Merged-chr11-53532405-3	chr11	53532300	53532500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252333, intron 2 of 9)	intron (NM_001252333, intron 2 of 9)	12212.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	52.09	47.79	54.19	41.43	75.68	65.54	30.23	40.77	76.12	61.76	62.81	43.23
Merged-chrX-8132113-3	chrX	8131992	8132192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028542, intron 1 of 8)	intron (NM_028542, intron 1 of 8)	766.0	NM_001290783	73447.0	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	36.75	42.26	27.95	35.8	55.23	59.58	31.89	43.88	60.38	55.73	71.86	34.77
Merged-chr4-139640959-1	chr4	139640859	139641059	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175438, intron 9 of 14)	intron (NM_175438, intron 9 of 14)	-3083.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	3.63	2.01	0.0	2.01	22.91	30.73	13.62	20.83	4.52	4.02	3.01	2.51
Merged-chr12-110933029-3	chr12	110932914	110933114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081057, exon 10 of 21)	exon (NM_001081057, exon 10 of 21)	43750.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	25.04	27.67	41.07	49.87	33.96	35.75	44.18	69.53	26.95	30.13	45.22	29.45
Merged-chr13-24393155-3	chr13	24392923	24393123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-22099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	1.21	1.51	2.28	4.83	3.27	1.88	4.32	2.19	6.88	8.03	12.56	4.07
Merged-chr6-91585682-1	chr6	91585582	91585782	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69647.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.23	2.26	0.0	5.63	3.27	2.82	10.3	11.64	1.77	1.51	4.02	3.45
Merged-chr1-134955999-3	chr1	134955894	134956094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-54.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	57.74	71.69	91.84	94.11	82.23	105.67	75.73	101.05	91.66	64.77	130.14	74.87
Merged-chr11-79088206-3	chr11	79088109	79088309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28373.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	38.36	33.45	47.92	49.87	64.23	76.51	36.87	65.8	45.24	58.75	77.38	51.38
Merged-chr4-6365904-3	chr4	6365815	6366015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	CpG	235.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	113.47	136.33	78.72	90.49	117.41	162.12	103.97	90.53	221.86	202.85	191.95	92.73
Merged-chr11-69991008-3	chr11	69990920	69991120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019749)	promoter-TSS (NM_019749)	-350.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	29.88	34.46	29.09	28.56	33.55	40.14	15.94	18.64	34.62	41.67	53.77	26.63
Merged-chr18-5803131-3	chr18	5803024	5803224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	86.82	92.06	136.91	119.86	147.69	185.95	143.5	134.89	106.21	111.97	139.19	56.07
Merged-chrX-167229514-3	chrX	167229434	167229634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20316.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	98.53	117.46	131.21	128.7	119.05	108.81	117.26	115.96	117.23	103.43	151.75	86.15
Merged-chr1-184027212-3	chr1	184027064	184027264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	6834.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	17.36	10.56	30.8	19.31	27.41	16.31	18.27	22.71	34.22	15.06	35.68	28.19
Merged-chr2-148875602-3	chr2	148875492	148875692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-80.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	239.85	222.85	297.78	335.43	300.69	275.32	280.68	308.22	289.13	266.12	369.32	174.49
Merged-chr13-23556206-3	chr13	23556084	23556284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145713)	TTS (NM_145713)	1152.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	59.76	53.07	47.35	29.76	42.14	48.92	44.84	48.34	56.45	41.67	91.95	49.18
Merged-chr12-100110213-3	chr12	100110128	100110328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2103.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	28.27	39.74	24.53	40.22	35.18	42.96	27.24	36.28	47.21	63.27	46.73	32.58
Merged-chr2-128719521-3	chr2	128719424	128719624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20609.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	85.2	65.4	75.3	74.0	42.96	52.68	35.87	63.36	55.07	57.74	50.75	31.01
Merged-chr1-30873842-3	chr1	30873719	30873919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10563.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	57.74	83.0	58.19	63.15	69.55	81.84	91.68	77.72	76.51	92.89	93.96	64.53
Merged-chr4-139193468-1	chr4	139193368	139193568	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	569.0	NM_001037761	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	10.9	6.79	12.55	12.47	7.77	9.72	11.29	13.35	9.05	24.1	24.12	16.92
Merged-chr12-55299550-3	chr12	55299446	55299646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-3091.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	60.17	55.34	79.29	85.67	82.64	83.41	82.05	104.75	86.74	85.86	113.06	86.15
Merged-chr6-85451984-3	chr6	85451872	85452072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-2.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	67.43	61.37	51.91	89.69	62.59	83.72	43.51	65.19	81.04	65.27	101.0	55.76
Merged-chr18-38443744-1	chr18	38443644	38443844	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 2 of 7)	intron (NM_001355749, intron 2 of 7)	24837.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.42	8.05	1.71	0.0	4.09	8.78	2.99	1.54	15.74	7.53	13.06	4.07
Merged-chr13-5774075-3	chr13	5773969	5774169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84023.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	47.65	47.04	41.64	45.05	56.05	77.45	61.45	79.51	58.81	52.22	44.72	27.57
Merged-chr11-20455235-3	chr11	20455147	20455347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-88006.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	17.36	13.33	15.4	29.36	17.59	21.01	20.26	19.07	19.08	20.08	26.63	13.78
Merged-chr2-30171529-3	chr2	30171512	30171712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007931)	promoter-TSS (NM_007931)	88.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	21.0	38.74	12.55	22.12	22.5	25.71	29.56	15.73	34.62	24.1	38.69	19.74
Merged-chr11-58959279-3	chr11	58959178	58959378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2433.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	39.98	32.95	43.93	25.34	18.41	16.62	12.29	24.03	97.16	91.38	102.0	57.64
Merged-chr9-90235494-3	chr9	90235362	90235562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35307.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	153.85	121.74	162.58	173.75	176.32	190.97	180.04	205.68	198.85	173.73	270.84	167.28
Merged-chr15-6623871-3	chr15	6623780	6623980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	30423.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	121.54	125.76	98.12	77.62	99.41	173.09	91.01	73.4	119.78	139.59	145.72	65.16
Merged-chr11-97703267-3	chr11	97703172	97703372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-162.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	163.13	140.35	136.34	145.19	172.64	219.19	101.98	116.27	189.21	184.77	131.65	98.37
Merged-chr11-100619653-3	chr11	100619564	100619764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019795, exon 1 of 14)	5' UTR (NM_019795, exon 1 of 14)	504.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	59.36	23.39	17.11	23.33	56.05	54.88	17.27	25.74	62.15	54.23	92.46	39.78
Merged-chr1-180196046-3	chr1	180195916	180196116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359268)	promoter-TSS (NM_001359268)	4.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	158.69	159.47	194.53	160.08	185.32	201.31	161.44	204.84	225.99	212.39	303.0	132.83
Merged-chr13-101879902-3	chr13	101879799	101879999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111682.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	56.53	52.07	69.03	47.06	54.41	63.66	89.69	45.9	65.1	97.41	105.52	54.51
Merged-chr11-54812946-3	chr11	54812853	54813053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6966.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	67.43	61.88	53.05	74.81	60.55	74.32	44.51	81.2	73.36	46.19	64.32	43.54
Merged-chr19-9975102-3	chr19	9975016	9975216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5484.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	143.35	123.25	124.36	109.4	153.82	181.87	116.59	113.38	135.71	141.09	148.73	89.59
Merged-chr5-124021926-3	chr5	124021823	124022023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	RSINE1|SINE|B4	10337.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	22.21	12.32	17.68	21.32	23.32	14.42	16.61	19.77	35.6	34.65	23.11	31.01
Merged-chr14-24487071-3	chr14	24486984	24487184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081247)	promoter-TSS (NM_001081247)	-26.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	50.07	36.97	25.1	29.76	36.82	40.14	26.24	35.16	51.93	57.74	47.74	27.57
Merged-chr7-81571232-3	chr7	81571156	81571356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004185)	promoter-TSS (NM_001004185)	-36.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	57.34	62.88	77.01	71.59	83.05	76.83	49.49	88.12	97.56	92.89	110.55	52.32
Merged-chr8-88274879-2	chr8	88274772	88274972	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	2469.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	7.27	3.02	10.27	5.23	37.64	31.67	29.56	33.14	28.72	23.1	31.15	26.63
Merged-chr10-120209638-5	chr10	120209559	120209759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026617, intron 1 of 6)	L1MB2|LINE|L1	833.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	18.57	23.39	24.53	16.09	29.05	16.93	4.98	18.95	29.7	16.07	21.1	11.59
Merged-chr11-84870848-3	chr11	84870733	84870933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131197)	promoter-TSS (NR_131197)	-90.0	NR_131197	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	113.06	123.0	150.6	81.65	129.69	162.12	84.7	87.11	143.58	144.1	114.57	87.09
Merged-chr11-54988985-3	chr11	54988893	54989093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 19 of 24)	L1MB3|LINE|L1	-26053.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	22.21	17.61	39.93	23.33	29.05	22.89	21.92	34.07	36.98	35.15	46.23	25.37
Merged-chr11-75054885-3	chr11	75054770	75054970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11121.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	63.4	50.56	76.44	88.89	80.18	65.85	83.37	96.08	69.43	51.72	106.02	61.09
Merged-chr7-44848697-1	chr7	44848597	44848797	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	382.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	37.96	52.57	48.49	45.45	53.59	62.09	44.18	40.51	50.16	59.75	70.85	41.66
Merged-chr16-94246149-3	chr16	94246038	94246238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	44153.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	42.4	34.96	29.66	34.19	50.32	55.5	21.59	41.64	48.78	50.71	65.83	31.95
Merged-chr12-3310056-3	chr12	3309946	3310146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-77.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	167.17	178.58	236.74	214.77	235.64	271.55	189.01	222.9	262.78	248.54	382.39	159.14
Merged-chr8-121950372-6	chr8	121950202	121950402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-190.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	51.28	60.87	41.07	43.84	49.91	71.18	69.42	42.31	71.79	82.85	80.9	62.34
Merged-chr10-30600669-3	chr10	30600580	30600780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028604)	promoter-TSS (NM_028604)	20.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	39.57	28.17	22.82	35.8	50.32	36.06	33.88	61.57	67.66	37.16	52.76	29.13
Merged-chr17-13683998-3	chr17	13683909	13684109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76532.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	58.55	50.05	81.58	70.38	82.23	82.78	66.1	93.76	127.06	122.01	165.82	90.53
Merged-chr5-23787645-3	chr5	23787547	23787747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177323)	promoter-TSS (NM_177323)	-64.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	81.57	74.45	95.84	107.39	57.68	64.6	50.49	74.55	104.64	103.43	110.04	52.0
Merged-chr2-24977276-3	chr2	24977172	24977372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	1239.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	52.09	51.81	44.5	54.7	64.64	66.79	29.23	70.54	71.59	50.21	49.24	46.05
Merged-chr9-65075338-3	chr9	65075233	65075433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028906, intron 17 of 20)	intron (NM_028906, intron 17 of 20)	-26153.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	22.21	26.16	35.37	36.6	25.77	35.12	29.23	39.67	56.25	23.1	31.15	28.19
Merged-chr15-9430073-3	chr15	9429971	9430171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5957.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	25.44	24.15	41.64	26.95	18.82	36.69	23.58	45.67	39.53	35.15	53.77	31.01
Merged-chr19-46511463-3	chr19	46511369	46511569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9821.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	159.5	139.85	193.96	176.97	174.28	197.86	142.5	153.59	181.94	161.18	216.07	103.69
Merged-chr6-17065163-1	chr6	17065063	17065263	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207176)	promoter-TSS (NM_207176)	14.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	5.65	4.53	4.56	13.27	5.73	13.48	5.31	16.65	11.8	4.02	6.53	8.77
Merged-chr4-129672653-4	chr4	129672552	129672752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008468, intron 1 of 13)	CpG	115.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	18.17	19.87	28.52	12.07	26.18	20.07	26.91	24.93	34.22	26.61	20.1	28.51
Merged-chr8-71382093-3	chr8	71381995	71382195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-143.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	41.59	43.26	27.95	30.16	67.5	58.95	34.21	34.23	66.68	67.78	80.9	27.57
Merged-chr1-93478934-3	chr1	93478836	93479036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-19.0	NM_133808	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	175.25	196.19	184.26	175.36	222.55	280.33	189.01	179.3	280.28	292.73	355.76	154.75
Merged-chr2-16183292-3	chr2	16183194	16183394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	MER44D|DNA|TcMar-Tigger	-173010.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	39.57	22.39	41.07	49.47	84.28	76.51	73.74	74.1	61.96	59.75	53.77	41.66
Merged-chr19-18647059-3	chr19	18646976	18647176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145497, intron 8 of 8)	intron (NM_145497, intron 8 of 8)	15060.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	52.49	38.74	42.78	65.56	61.37	38.88	60.12	89.1	41.7	38.16	59.8	21.93
Merged-chr7-28372831-3	chr7	28372745	28372945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-183.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	195.84	190.66	220.77	237.3	216.82	263.71	161.77	196.21	290.9	336.41	314.05	179.19
Merged-chr9-40807817-3	chr9	40807730	40807930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6557.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	58.15	47.79	51.34	61.94	57.27	74.63	50.16	71.3	98.34	76.82	96.48	43.54
Merged-chr6-137558992-3	chr6	137558886	137559086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12023.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	67.84	60.12	88.99	133.93	62.59	55.19	85.04	105.03	64.12	56.24	84.92	48.56
Merged-chr7-19303927-3	chr7	19303824	19304024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6121.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	50.88	61.88	21.68	52.29	38.46	81.22	26.57	21.14	57.43	74.31	52.76	17.54
Merged-chr15-64276490-3	chr15	64276406	64276606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	36167.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	13.33	11.57	23.96	25.74	28.64	22.58	29.9	28.65	21.44	27.11	33.67	13.16
Merged-chr17-24669633-3	chr17	24669543	24669743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-44.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	117.91	113.19	103.82	106.99	109.64	185.64	60.46	119.1	140.83	158.67	211.04	95.55
Merged-chr1-181016692-3	chr1	181016603	181016803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	866.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	35.94	35.72	45.07	76.42	33.14	32.3	48.83	66.56	46.22	30.63	55.78	45.42
Merged-chr16-32396398-3	chr16	32396299	32396499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4107.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	51.28	36.72	53.62	57.11	51.96	51.74	30.89	43.6	54.09	55.73	49.75	31.64
Merged-chr12-36053815-2	chr12	36053714	36053914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11336.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	61.78	33.45	38.22	70.38	62.18	55.5	62.12	83.41	3.34	1.51	6.03	2.82
Merged-chr11-58103977-3	chr11	58103874	58104074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	4.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	87.22	82.75	102.68	102.96	127.23	117.9	102.97	82.23	115.85	120.51	182.4	98.68
Merged-chr1-36308221-3	chr1	36308140	36308340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	507.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	122.75	97.84	123.79	89.69	108.82	127.0	118.25	127.91	118.8	122.01	137.18	98.99
Merged-chr9-64092317-3	chr9	64092233	64092433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11572.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	87.22	84.01	70.74	60.33	100.64	158.04	91.35	88.99	123.72	134.06	124.62	64.53
Merged-chr4-53124852-3	chr4	53124736	53124936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	L3|LINE|CR1	35059.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	53.7	45.78	83.29	49.47	100.64	80.9	57.13	75.62	64.32	83.85	127.13	36.03
Merged-chr11-16956676-3	chr11	16956557	16956757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5247.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	105.79	111.18	86.71	97.33	97.78	129.19	95.67	127.63	131.19	108.45	141.7	73.3
Merged-chr16-91728730-3	chr16	91728620	91728820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	82.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	131.23	143.12	122.08	127.5	158.32	168.39	113.93	135.25	185.67	200.34	240.19	119.98
Merged-chr19-6164349-3	chr19	6164232	6164432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028967)	promoter-TSS (NM_028967)	-107.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	44.01	46.53	27.38	18.5	26.59	64.91	18.93	22.6	48.19	61.26	37.18	18.8
Merged-chr17-8868072-3	chr17	8867973	8868173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	18088.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	14.13	23.39	35.37	23.33	44.59	31.36	32.22	52.77	40.12	19.08	44.22	20.05
Merged-chr10-96686288-3	chr10	96686199	96686399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69298.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	83.59	70.68	100.97	81.65	121.5	113.83	88.03	101.27	116.05	84.86	156.77	84.27
Merged-chr3-58414627-3	chr3	58414512	58414712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-108.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	64.61	76.21	63.32	84.06	51.96	66.48	68.76	70.71	80.84	84.35	65.83	63.91
Merged-chr8-126517351-3	chr8	126517261	126517461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42296.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	126.39	97.59	106.1	150.02	117.82	132.01	91.68	128.1	140.24	149.13	193.46	76.44
Merged-chr4-141994185-3	chr4	141994057	141994257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	GA-rich|Low_complexity|Low_complexity	11165.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	18.98	14.84	25.67	18.9	47.05	31.67	12.29	38.47	39.53	43.18	44.22	18.17
Merged-chr11-31733138-3	chr11	31733035	31733235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61273.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	136.89	162.24	158.02	168.92	63.0	97.83	103.31	131.3	245.27	194.82	177.38	119.04
Merged-chr5-147894873-3	chr5	147894768	147894968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	-53.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	150.21	136.08	158.59	131.12	137.87	114.45	90.02	116.44	128.44	141.09	156.27	75.81
Merged-chr14-31597680-3	chr14	31597577	31597777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20294.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	17.77	47.54	27.38	19.71	21.68	48.29	24.58	18.28	70.22	73.81	75.37	41.35
Merged-chr3-89727263-3	chr3	89727164	89727364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	-3454.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	8.08	14.84	7.42	17.29	25.36	23.52	13.95	20.92	28.72	24.1	46.23	13.16
Merged-chr10-87696702-1	chr10	87696602	87696802	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-161563.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	2.86	3.76	1.99	1.79	67.07	65.27	119.59	60.77
Merged-chr7-88315089-1	chr7	88314989	88315189	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	37004.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.06	2.26	0.0	1.61	5.32	10.03	3.65	10.91	1.97	9.54	3.52	1.88
Merged-chr12-108651258-4	chr12	108651225	108651425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 3 of 14)	intron (NM_001163396, intron 3 of 14)	-7295.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	14.54	10.82	18.83	19.71	31.09	32.3	30.56	32.66	32.85	39.16	41.2	26.94
Merged-chr16-55631795-3	chr16	55631692	55631892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137061.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	20.59	19.87	17.11	35.8	38.46	14.74	25.24	35.16	34.03	34.65	59.8	17.86
Merged-chr9-42141780-3	chr9	42141666	42141866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17469.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	41.19	22.64	46.21	43.44	23.73	15.68	28.23	28.32	38.16	35.15	30.15	19.11
Merged-chr17-34655813-3	chr17	34655718	34655918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017406)	TTS (NM_017406)	8672.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	55.72	50.81	37.08	59.12	14.32	26.65	17.61	18.06	44.45	55.73	39.7	34.15
Merged-chr15-73148342-3	chr15	73148256	73148456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36591.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	18.98	16.35	26.24	22.93	19.64	21.32	23.58	22.65	35.01	34.65	38.19	32.58
Merged-chr18-88972082-1	chr18	88971982	88972182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_105777)	promoter-TSS (NR_105777)	52.0	NR_105777	102466633.0		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	10.9	17.36	11.41	25.74	13.91	15.37	20.59	21.2	15.14	11.05	17.59	11.9
Merged-chr15-34043260-3	chr15	34043176	34043376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39443.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	16.15	21.63	23.39	11.66	16.77	21.01	16.28	19.37	32.06	30.13	40.2	20.68
Merged-chr2-156523203-3	chr2	156523105	156523305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24371.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	48.05	44.52	46.78	33.78	60.96	54.56	45.84	68.47	68.84	59.75	61.81	57.95
Merged-chr8-105170548-3	chr8	105170453	105170653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161457)	promoter-TSS (NM_001161457)	-121.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	124.37	137.84	155.73	156.05	128.05	131.39	101.31	134.33	133.16	104.94	112.05	69.55
Merged-chr17-29435598-3	chr17	29435485	29435685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-55460.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	96.51	66.65	70.17	92.91	60.55	76.51	78.72	52.88	91.85	82.85	128.64	58.27
Merged-chr4-152178046-3	chr4	152177951	152178151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-49.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	97.31	86.53	77.01	102.16	106.37	105.67	89.69	95.3	111.52	100.42	147.73	69.86
Merged-chr15-8992345-3	chr15	8992238	8992438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198024, intron 1 of 13)	MIRb|SINE|MIR	24389.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	65.41	57.6	72.45	65.16	87.14	62.71	62.78	98.72	103.46	104.44	132.66	61.71
Merged-chr13-20208268-3	chr13	20208145	20208345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	117738.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	56.13	35.72	41.64	65.16	67.5	47.98	76.07	79.85	93.43	75.32	106.53	70.48
Merged-chr8-122557897-3	chr8	122557788	122557988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6559.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	28.27	34.96	23.96	42.23	43.36	34.81	47.5	57.11	24.0	36.15	30.65	30.39
Merged-chr9-15301591-3	chr9	15301499	15301699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	8.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	66.63	52.82	52.48	72.8	48.27	73.38	74.41	116.41	75.53	53.73	83.41	62.34
Merged-chrX-37085406-3	chrX	37085309	37085509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026055)	promoter-TSS (NM_026055)	-187.0	NM_026055	67248.0	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	24.23	28.17	32.52	43.44	31.5	44.21	53.48	38.07	32.65	40.17	39.7	35.4
Merged-chr14-103012720-3	chr14	103012634	103012834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	21069.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	42.8	56.34	24.53	16.09	52.37	104.11	32.22	40.04	93.23	104.44	88.44	26.94
Merged-chr16-16073537-3	chr16	16073443	16073643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	73308.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	78.74	87.78	90.13	102.96	96.96	112.26	73.08	118.32	118.6	114.48	117.08	72.36
Merged-chr1-182908561-3	chr1	182908476	182908676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46212.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	105.79	66.91	129.49	93.31	130.91	90.94	93.34	127.99	112.11	102.93	136.68	97.43
Merged-chr1-152903315-3	chr1	152903225	152903425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-679.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	146.17	128.78	146.61	120.66	165.69	176.86	84.04	122.08	186.46	209.38	174.36	134.39
Merged-chr17-31039818-3	chr17	31039716	31039916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17878.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	95.7	73.7	104.39	105.78	102.28	110.69	62.12	83.41	118.8	89.37	94.97	59.21
Merged-chr5-124425904-3	chr5	124425740	124425940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359978)	promoter-TSS (NM_001359978)	117.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	62.18	63.39	43.35	41.02	45.82	70.24	44.84	47.89	64.51	83.35	41.2	48.87
Merged-chr10-121471746-3	chr10	121471647	121471847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	4503.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	31.5	17.61	30.23	43.44	43.36	37.0	63.11	67.6	29.7	17.07	35.68	33.83
Merged-chr8-109777795-3	chr8	109777704	109777904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-779.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	22.21	25.15	35.37	32.98	18.82	19.13	24.58	26.47	31.86	16.57	28.64	26.0
Merged-chr1-155812902-3	chr1	155812805	155813005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023268)	promoter-TSS (NM_023268)	-6.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	76.72	57.35	60.47	56.31	99.41	86.86	58.46	58.77	50.16	43.18	76.38	37.28
Merged-chr12-102456237-1	chr12	102456137	102456337	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12897.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	6.46	3.77	6.28	11.66	5.73	13.17	13.62	11.61	10.03	12.55	19.09	12.22
Merged-chr7-80779501-3	chr7	80779405	80779605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23826.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	171.61	153.18	174.56	141.17	172.23	238.94	138.85	154.43	193.93	193.31	243.2	109.02
Merged-chr10-98775024-3	chr10	98774938	98775138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139604.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	60.17	46.53	61.61	50.27	81.0	70.24	57.8	66.0	80.25	55.73	70.35	50.75
Merged-chr1-189875833-1	chr1	189875733	189875933	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	46458.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	1.62	1.01	5.13	1.61	25.77	24.15	24.91	37.12	3.54	0.0	4.02	1.57
Merged-chr3-144697350-3	chr3	144697249	144697449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 8 of 10)	(T)n|Simple_repeat|Simple_repeat	22986.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	60.57	65.15	56.48	54.7	40.09	80.59	37.54	76.29	111.33	66.78	80.9	41.35
Merged-chr9-50856560-1	chr9	50856460	50856660	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-364.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	1.21	3.27	3.42	0.8	12.27	0.0	2.99	0.56	20.65	24.6	28.64	17.54
Merged-chr8-71570513-3	chr8	71570411	71570611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357182)	promoter-TSS (NM_001357182)	-83.0	NM_001357182	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	136.48	107.15	124.93	136.35	174.69	193.16	128.22	148.49	168.37	164.19	178.38	108.7
Merged-chr12-110776193-3	chr12	110776113	110776313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	38281.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	68.24	53.58	130.63	71.59	60.14	83.41	69.09	103.77	80.25	43.68	128.64	53.88
Merged-chr17-83395585-3	chr17	83395494	83395694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 1 of 21)	MTEa|LTR|ERVL-MaLR	44663.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	10.09	15.85	33.09	13.67	19.64	18.5	11.96	22.6	21.64	29.62	43.21	16.6
Merged-chr2-128297050-3	chr2	128296945	128297145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132306.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	35.94	18.86	38.22	21.72	36.41	45.78	31.22	37.85	47.99	50.21	30.65	34.15
Merged-chr14-120910519-2	chr14	120910427	120910627	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-667.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	29.48	27.92	19.97	7.24	27.0	45.15	28.9	24.17	40.91	50.21	53.26	21.62
Merged-chr6-3447638-3	chr6	3447559	3447759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	46839.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	27.05	49.8	32.52	55.1	36.82	63.34	36.87	53.36	74.94	63.77	75.37	36.65
Merged-chr8-72723305-3	chr8	72723247	72723447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009188)	promoter-TSS (NM_009188)	77.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	30.28	48.29	38.79	53.89	37.64	51.74	41.52	31.85	49.57	40.17	60.8	27.88
Merged-chr2-14231626-3	chr2	14231523	14231723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	2209.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	36.34	27.17	22.25	23.33	59.73	56.76	35.87	45.2	55.86	59.75	41.71	33.52
Merged-chr5-135394576-3	chr5	135394474	135394674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-28.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	65.41	53.58	65.6	38.21	78.14	101.6	31.56	46.96	66.28	82.85	86.43	50.12
Merged-chr9-21146929-3	chr9	21146833	21147033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	2973.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	39.98	34.21	29.09	31.77	62.59	67.42	24.58	50.64	52.71	54.73	53.26	27.88
Merged-chr11-69408755-3	chr11	69408657	69408857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001017426, exon 2 of 23)	5' UTR (NM_001017426, exon 2 of 23)	4918.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	170.4	146.89	213.35	171.74	140.32	205.39	163.43	148.74	206.52	181.26	214.06	107.76
Merged-chr9-96478676-3	chr9	96478572	96478772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011279)	promoter-TSS (NM_011279)	3.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	107.41	82.25	92.98	93.71	110.46	103.17	63.11	79.23	124.31	149.13	157.78	77.06
Merged-chr2-11535587-3	chr2	11535471	11535671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	CpG	18358.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	92.47	75.46	91.27	70.38	112.91	123.23	74.74	115.26	123.72	121.01	153.26	96.8
Merged-chr8-70375374-3	chr8	70375279	70375479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016685, intron 4 of 18)	CpG-14087	1831.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	54.51	41.0	51.34	28.96	64.23	75.26	41.85	64.21	65.5	64.77	60.8	27.25
Merged-chr1-33907615-3	chr1	33907524	33907724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-3.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	48.86	50.31	18.25	31.37	27.41	51.43	23.92	29.55	34.22	41.17	37.18	16.29
Merged-chr1-140257911-3	chr1	140257807	140258007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	11650.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	25.04	34.46	58.19	51.88	63.0	47.66	39.86	89.44	35.01	40.17	50.75	39.78
Merged-chr6-54956571-3	chr6	54956486	54956686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15075.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	18.98	50.31	63.32	43.84	55.23	50.8	43.51	57.7	78.87	108.96	87.93	47.3
Merged-chr9-21265227-3	chr9	21265138	21265338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-47.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	84.8	76.21	82.15	80.84	101.05	132.01	92.34	106.32	132.57	107.45	132.15	79.88
Merged-chr10-80929895-3	chr10	80929803	80930003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-188.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	199.48	182.86	153.45	154.44	178.78	258.7	112.27	119.83	281.85	316.83	314.05	155.38
Merged-chr6-120472097-3	chr6	120472001	120472201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008359, exon 2 of 13)	exon (NM_008359, exon 2 of 13)	8904.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	35.53	23.39	55.33	41.83	59.73	56.76	66.1	76.93	60.78	36.15	78.39	28.19
Merged-chr7-118116209-3	chr7	118116117	118116317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170669)	promoter-TSS (NM_170669)	-70.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	54.51	62.88	67.88	57.51	64.64	88.43	53.81	52.26	139.45	121.51	116.07	83.02
Merged-chr2-52857736-3	chr2	52857623	52857823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	-145.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	35.94	40.24	38.79	44.64	52.37	50.8	40.52	61.99	54.09	42.68	68.84	23.81
Merged-chr11-53762992-3	chr11	53762904	53763104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106131)	TTS (NR_106131)	650.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	81.57	66.15	52.48	28.56	74.05	126.37	31.89	29.02	90.48	102.43	60.8	31.33
Merged-chr6-22474813-3	chr6	22474698	22474898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118717.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	42.8	47.04	51.34	57.51	49.09	37.63	41.19	57.62	58.42	49.71	62.81	25.06
Merged-chr6-54593260-3	chr6	54593167	54593367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153573)	promoter-TSS (NM_153573)	-139.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	43.21	23.64	40.5	42.23	45.82	54.56	46.84	56.19	48.98	47.2	74.37	31.95
Merged-chr2-84531468-3	chr2	84531379	84531579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24606.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	44.42	34.46	54.19	45.85	53.59	51.11	47.17	67.29	43.66	43.18	51.76	36.65
Merged-chr9-119982531-3	chr9	119982427	119982627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	496.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	24.23	25.4	30.23	32.98	25.77	29.79	19.6	21.56	47.01	37.66	55.27	31.64
Merged-chr4-119320570-3	chr4	119320481	119320681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028677)	promoter-TSS (NM_028677)	-58.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	43.61	39.99	45.64	38.61	65.05	53.31	33.22	31.71	63.33	76.32	73.36	44.48
Merged-chr15-51734391-3	chr15	51734261	51734461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131100.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	28.27	27.92	50.77	44.64	50.73	37.94	49.83	51.62	60.58	51.72	60.8	21.62
Merged-chr3-28099358-3	chr3	28099243	28099443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	115172.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	23.42	29.93	78.15	27.75	47.46	58.64	55.8	61.04	83.0	77.83	91.95	49.18
Merged-chr4-95209561-3	chr4	95209445	95209645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157323.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	28.27	24.9	29.66	39.82	51.96	81.22	34.55	58.15	38.75	59.25	29.65	21.3
Merged-chr9-100504536-3	chr9	100504441	100504641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	L3|LINE|CR1	2315.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	50.47	36.97	31.95	18.9	31.5	53.93	21.59	13.12	56.65	37.16	33.67	16.92
Merged-chr12-79172661-3	chr12	79172585	79172785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016800)	promoter-TSS (NM_016800)	-227.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	79.55	101.37	100.97	103.37	140.73	153.65	114.93	125.69	121.75	99.92	154.76	88.34
Merged-chr12-54696930-3	chr12	54696806	54697006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U1|snRNA|snRNA	-1012.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	44.42	26.91	37.65	18.5	34.36	55.82	22.26	23.86	60.19	55.73	60.8	34.15
Merged-chr19-3378792-3	chr19	3378686	3378886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-10071.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	59.76	50.31	70.17	76.82	51.14	68.05	58.46	57.22	74.94	75.82	86.43	36.34
Merged-chr6-112696285-3	chr6	112696171	112696371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167730, intron 1 of 13)	intron (NM_001167730, intron 1 of 13)	399.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	26.25	27.42	33.66	18.9	24.14	35.75	16.61	22.88	41.11	40.67	34.67	19.74
Merged-chr10-128536482-3	chr10	128536369	128536569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10610.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	64.2	48.04	35.37	31.77	53.18	61.15	16.61	46.35	65.5	64.77	72.86	42.92
Merged-chr16-44768131-3	chr16	44768028	44768228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	2392.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	20.59	28.42	23.96	20.91	33.55	27.59	11.29	24.06	31.47	30.63	25.12	20.36
Merged-chr16-21382361-3	chr16	21382259	21382459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40759.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	97.31	60.37	91.84	93.31	86.73	96.58	61.45	104.3	102.87	102.43	130.65	65.16
Merged-chr17-29717011-3	chr17	29716893	29717093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	24.0	NM_026782	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	29.48	35.72	33.09	43.44	44.18	56.13	29.9	31.79	33.63	31.63	32.66	20.99
Merged-chr5-135545466-3	chr5	135545345	135545545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-323.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	216.03	222.1	251.0	214.37	283.51	338.03	264.08	270.7	261.01	353.48	369.32	215.21
Merged-chr3-89087644-3	chr3	89087598	89087798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028188, intron 9 of 10)	intron (NM_028188, intron 9 of 10)	2333.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	19.79	17.61	21.11	26.95	19.23	15.99	26.57	23.89	25.77	21.59	16.58	25.69
Merged-chr6-54811791-3	chr6	54811692	54811892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5124.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	32.71	43.01	46.21	53.49	28.23	37.32	20.26	51.25	27.93	21.59	36.18	31.33
Merged-chr11-87404558-3	chr11	87404457	87404657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031386)	promoter-TSS (NM_031386)	-62.0	NM_053269	114714.0	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	142.94	113.44	109.53	100.55	90.41	137.34	46.84	65.61	186.85	171.22	143.71	90.53
Merged-chr15-80134057-3	chr15	80133968	80134168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025609, intron 1 of 10)	intron (NM_025609, intron 1 of 10)	914.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	25.84	12.58	26.24	17.29	24.55	29.79	15.94	27.56	27.14	26.11	28.64	19.42
Merged-chr11-118476887-3	chr11	118476794	118476994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359368)	promoter-TSS (NM_001359368)	62.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	117.5	118.97	116.94	117.44	124.78	163.06	111.61	132.34	156.17	149.13	178.38	111.84
Merged-chr3-79288276-3	chr3	79288166	79288366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57110.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	35.94	31.94	52.48	51.08	43.77	39.2	19.93	50.16	42.09	23.1	28.14	21.3
Merged-chr1-119492402-3	chr1	119492300	119492500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	RLTR26B_MM|LTR|ERVK	12382.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	14.94	12.58	31.95	28.96	24.14	15.37	23.92	28.51	26.55	22.59	48.74	15.66
Merged-chr9-77750756-3	chr9	77750669	77750869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3766.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	121.95	91.3	100.4	110.6	131.73	129.82	98.99	112.46	140.63	156.15	190.94	92.1
Merged-chr12-25098915-3	chr12	25098822	25099022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2830.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	161.92	152.68	147.18	154.44	144.82	193.79	104.63	201.45	190.98	209.88	233.15	121.23
Merged-chr16-16870775-3	chr16	16870651	16870851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	15.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	70.66	77.22	59.9	64.35	59.73	58.01	49.16	42.73	84.97	63.27	87.93	34.77
Merged-chr17-63422103-3	chr17	63422002	63422202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	78478.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	21.4	17.1	37.08	44.24	38.05	20.38	28.57	37.32	42.09	46.7	44.72	27.57
Merged-chr11-69662312-1	chr11	69662212	69662412	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	337.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	45.63	24.65	33.66	24.53	26.18	40.14	18.6	27.14	58.42	61.76	39.7	33.21
Merged-chr10-76442336-3	chr10	76442238	76442438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008787, intron 1 of 41)	CpG	574.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	47.24	43.26	24.53	36.6	70.77	54.88	32.22	44.33	69.82	59.25	117.58	36.03
Merged-chr15-77842288-3	chr15	77842189	77842389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-114.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	272.16	239.2	222.48	246.15	287.19	318.9	206.28	246.87	326.31	366.54	349.23	218.35
Merged-chr3-37312479-3	chr3	37312336	37312536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	10.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	82.78	58.86	70.17	84.46	94.09	70.55	51.15	94.6	99.13	84.86	126.63	55.45
Merged-chr10-37204569-3	chr10	37204483	37204683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65657.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	27.86	22.89	25.1	17.7	45.0	37.0	38.53	36.06	33.24	51.72	30.65	23.49
Merged-chr3-144205440-3	chr3	144205306	144205506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-151.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	84.8	89.54	61.04	71.59	60.14	61.46	81.38	76.74	74.35	64.27	69.85	38.85
Merged-chr17-32284053-3	chr17	32283953	32284153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	70.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	79.55	69.92	61.61	65.56	78.55	71.49	54.14	73.63	62.55	77.32	81.9	39.16
Merged-chr11-20204517-3	chr11	20204415	20204615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	B1F|SINE|Alu	3103.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	39.98	42.01	31.95	37.4	25.36	48.29	48.5	68.47	71.59	62.26	50.75	37.28
Merged-chr16-35939875-3	chr16	35939773	35939973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	-846.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	123.97	125.76	158.02	129.11	111.28	137.66	101.31	130.49	134.34	158.16	134.16	77.69
Merged-chr11-65788352-3	chr11	65788261	65788461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009157)	promoter-TSS (NM_009157)	-2.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	81.97	104.13	118.08	105.38	124.78	140.79	63.78	107.75	151.06	143.1	203.0	87.4
Merged-chr4-48279707-3	chr4	48279641	48279841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	-19.0	NM_010569	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	199.88	178.33	237.88	225.63	208.23	267.48	217.57	294.51	269.66	273.15	429.12	215.84
Merged-chr10-81088595-3	chr10	81088480	81088680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145365, exon 8 of 12)	exon (NM_145365, exon 8 of 12)	10292.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	23.02	16.85	19.4	21.32	33.14	21.64	17.61	24.22	25.57	38.66	33.67	31.64
Merged-chr4-135820403-3	chr4	135820310	135820510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35661.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	10.9	22.39	19.4	24.13	15.96	20.38	15.61	20.92	26.36	21.09	21.61	15.66
Merged-chr17-25844562-3	chr17	25844474	25844674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163766)	TTS (NM_001163766)	277.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	44.42	31.19	43.93	38.21	69.14	58.64	29.9	44.13	70.02	57.24	52.76	32.58
Merged-chr17-71286122-3	chr17	71286024	71286224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24887.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	45.63	26.91	73.02	75.21	79.37	75.88	89.69	132.34	21.24	45.19	67.84	33.21
Merged-chr1-40230519-3	chr1	40230439	40230639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	5459.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	17.77	21.88	29.66	29.36	16.36	12.54	32.88	41.3	13.96	8.54	24.62	13.16
Merged-chr19-41774617-1	chr19	41774517	41774717	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27467.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	4.44	6.79	9.7	9.65	22.91	9.09	8.3	12.93	43.07	38.66	48.24	38.53
Merged-chr5-21188607-3	chr5	21188497	21188697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2330.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	102.97	83.51	106.1	112.62	117.41	135.15	74.41	123.87	96.57	110.97	126.63	59.21
Merged-chr16-23305912-3	chr16	23305807	23306007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	15437.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	23.82	24.65	30.23	38.21	27.0	40.76	32.22	51.14	22.42	23.1	51.76	26.0
Merged-chr11-50292485-3	chr11	50292380	50292580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-144.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	189.78	187.39	220.77	223.22	257.74	262.77	167.08	225.31	283.23	304.78	312.54	174.49
Merged-chr8-35705037-1	chr8	35704937	35705137	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116017.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	0.75	5.7	5.63	2.86	0.63	11.29	9.2	5.9	1.51	7.03	2.51
Merged-chr12-110845312-3	chr12	110845251	110845451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Ile-ATT|tRNA|tRNA	4322.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	64.2	53.58	55.9	54.7	41.73	71.49	36.87	31.68	48.78	53.73	47.23	40.1
Merged-chr4-134128781-3	chr4	134128683	134128883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-30.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	31.5	17.1	24.53	28.15	50.73	40.76	23.58	34.4	40.71	34.65	39.7	23.81
Merged-chr16-10433531-3	chr16	10433437	10433637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	59.36	58.61	75.3	48.67	81.0	111.95	63.44	53.69	86.35	78.83	68.84	41.35
Merged-chr15-96286780-3	chr15	96286677	96286877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-745.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	123.56	105.64	91.84	99.75	83.05	108.18	57.47	100.82	113.49	110.97	123.61	61.71
Merged-chr11-53430411-3	chr11	53430311	53430511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025352, intron 1 of 1)	intron (NM_025352, intron 1 of 1)	420.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	25.44	19.12	25.67	15.69	18.82	36.37	16.61	20.92	42.29	33.64	37.69	27.88
Merged-chr13-80949278-3	chr13	80949171	80949371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_103550)	TTS (NR_103550)	8868.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	59.76	41.25	71.31	79.64	89.18	93.44	88.69	100.29	104.24	114.48	104.01	65.16
Merged-chr6-54284507-3	chr6	54284419	54284619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	11697.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	33.52	32.95	70.17	77.22	65.46	65.85	51.82	82.65	37.37	51.21	70.85	41.66
Merged-chr15-79687967-3	chr15	79687873	79688073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-101.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	68.24	72.69	77.01	56.31	81.82	80.9	56.47	68.1	102.08	85.86	79.39	55.13
Merged-chr4-116557082-3	chr4	116556980	116557180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-647.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	37.15	28.17	19.97	33.78	25.36	36.37	28.23	29.69	56.06	45.19	38.69	31.01
Merged-chr11-77386550-3	chr11	77386427	77386627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	38247.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	44.01	20.37	39.93	42.23	44.18	35.75	18.6	49.85	30.09	28.12	40.2	16.29
Merged-chr4-115857486-3	chr4	115857368	115857568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355174, intron 3 of 11)	intron (NM_001355174, intron 3 of 11)	18270.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	64.2	48.54	52.48	80.84	59.32	50.8	57.47	91.96	76.31	73.81	107.53	42.92
Merged-chrUn_JH584304-11029-1	chrUn_JH584304	10929	11129	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48660.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	20.65	18.58	13.06	13.78
Merged-chr2-13413699-3	chr2	13413591	13413791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	78185.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	63.8	41.5	59.33	60.73	108.0	105.67	70.09	90.25	69.82	72.3	91.95	45.42
Merged-chr4-132780472-3	chr4	132780372	132780572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12112.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	67.84	42.51	55.9	61.13	81.41	71.81	34.55	52.54	64.32	49.21	50.75	45.74
Merged-chr13-54565424-3	chr13	54565338	54565538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-56.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	88.03	61.88	54.19	35.39	48.68	120.41	33.55	41.22	110.54	107.95	70.85	29.45
Merged-chr11-49846749-3	chr11	49846707	49846907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	56.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	186.96	179.34	185.4	172.14	169.78	190.97	169.74	178.8	185.48	213.9	203.51	151.62
Merged-chr1-131138300-3	chr1	131138127	131138327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	7.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	47.65	36.97	39.93	32.58	47.46	48.92	43.18	40.26	60.97	45.69	32.66	26.31
Merged-chr1-91250218-3	chr1	91250113	91250313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-91.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	167.58	214.3	237.88	193.86	216.42	223.89	164.76	198.98	252.35	278.67	280.89	129.07
Merged-chr2-150840303-3	chr2	150840218	150840418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	2252.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	152.63	136.58	188.25	196.68	164.05	166.82	174.39	179.05	151.45	116.99	203.51	129.38
Merged-chr7-28732906-3	chr7	28732810	28733010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310687, intron 3 of 6)	intron (NM_001310687, intron 3 of 6)	7911.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	69.86	44.77	58.76	43.04	65.05	73.69	46.17	81.08	75.53	66.78	90.45	47.93
Merged-chr17-81706318-3	chr17	81706204	81706404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	32083.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	24.63	10.31	18.25	16.09	31.91	15.37	20.59	25.77	30.68	20.59	31.66	20.99
Merged-chr17-34101899-3	chr17	34101791	34101991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6582.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	42.8	54.83	41.64	41.43	24.14	38.26	15.94	16.12	59.4	71.8	63.82	43.86
Merged-chr4-12088002-3	chr4	12087912	12088112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177861)	promoter-TSS (NM_177861)	-5.0	NR_110955	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	97.72	94.32	67.88	78.83	92.87	117.9	67.76	92.52	148.89	151.13	162.3	94.92
Merged-chr11-116852495-3	chr11	116852387	116852587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011358, intron 1 of 2)	CpG	607.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	33.92	24.15	19.97	33.38	29.46	40.45	23.58	26.05	57.04	39.67	42.21	31.01
Merged-chr13-28420039-3	chr13	28419932	28420132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277548.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	33.92	39.49	24.53	44.24	83.46	58.64	54.14	102.11	54.48	42.68	60.3	28.51
Merged-chr8-70792496-3	chr8	70792396	70792596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-63.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	124.37	106.14	98.69	99.75	147.28	152.4	75.07	132.0	143.58	154.15	146.22	71.42
Merged-chr16-97962291-3	chr16	97962174	97962374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175428, intron 1 of 2)	CpG	348.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	135.27	104.13	156.31	140.77	190.64	162.74	121.91	178.68	262.38	200.84	339.68	130.01
Merged-chr14-54409418-3	chr14	54409316	54409516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	56.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	55.72	46.03	54.19	41.43	45.82	52.05	60.79	62.64	43.27	37.66	39.7	18.8
Merged-chr12-8922971-3	chr12	8922874	8923074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	1667.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	53.7	43.26	63.32	47.86	35.59	32.61	49.83	53.3	60.97	59.75	61.81	41.98
Merged-chr4-57959398-3	chr4	57959320	57959520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3009.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	54.51	34.21	55.9	44.24	51.14	42.96	55.8	84.45	67.07	67.78	110.04	46.68
Merged-chr7-24547047-3	chr7	24546955	24547155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009532, exon 2 of 18)	5' UTR (NM_009532, exon 2 of 18)	356.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	206.74	199.96	201.94	219.6	247.92	292.88	157.12	211.68	252.35	205.86	303.0	129.07
Merged-chr12-16584243-3	chr12	16584152	16584352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	5518.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	70.26	75.21	60.47	44.64	63.0	72.44	58.13	53.38	20.06	26.61	24.62	14.72
Merged-chr7-130893252-3	chr7	130893159	130893359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357696, intron 5 of 12)	intron (NM_001357696, intron 5 of 12)	-15009.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	80.36	57.35	61.04	45.45	67.09	90.62	54.14	56.72	76.51	99.42	80.4	39.47
Merged-chr8-46933863-3	chr8	46933757	46933957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53030.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	17.77	17.61	27.38	15.28	29.46	21.64	13.95	22.63	15.14	23.6	24.62	18.48
Merged-chr9-119322367-3	chr9	119322275	119322475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	52.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	37.96	37.23	23.39	26.95	19.64	32.3	28.9	28.46	64.12	60.25	43.72	27.57
Merged-chr17-29490530-3	chr17	29490433	29490633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-512.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	286.29	264.86	244.73	200.7	245.87	330.82	191.99	179.55	328.08	350.47	390.43	175.12
Merged-chr5-108694173-3	chr5	108694083	108694283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164259)	promoter-TSS (NM_001164259)	-46.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	113.06	95.83	96.41	123.48	141.55	102.85	77.06	140.61	134.73	119.0	160.29	93.35
Merged-chr7-44970315-3	chr7	44970203	44970403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357670, intron 6 of 18)	intron (NM_001357670, intron 6 of 18)	4548.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	73.89	62.63	102.68	62.34	100.23	110.38	67.43	74.41	86.74	87.87	100.5	31.01
Merged-chr11-90002881-3	chr11	90002776	90002976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008796)	promoter-TSS (NM_008796)	18.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	71.47	84.01	114.66	93.71	92.05	111.0	61.12	106.96	87.72	81.84	157.78	47.93
Merged-chr3-109448459-3	chr3	109448360	109448560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	L3|LINE|CR1	107777.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	38.36	48.8	39.36	65.16	55.23	49.23	36.21	34.04	57.43	58.75	56.28	45.74
Merged-chr10-30778487-3	chr10	30778389	30778589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	24837.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	31.09	27.42	17.68	25.34	36.0	48.29	39.2	34.32	38.35	44.69	56.28	18.8
Merged-chr4-129820704-3	chr4	129820611	129820811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	3.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	31.09	35.47	48.49	34.99	46.23	49.86	34.21	32.8	48.58	34.65	46.23	32.27
Merged-chr9-61032274-2	chr9	61032187	61032387	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15218.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	6.46	2.52	0.0	2.01	13.5	31.98	16.28	15.59	40.52	47.7	37.69	14.72
Merged-chr9-124037930-3	chr9	124037857	124038057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26B_MM|LTR|ERVK	15986.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	46.44	62.88	54.19	60.33	60.96	79.96	44.84	84.11	55.66	71.3	116.07	46.68
Merged-chr2-10048634-3	chr2	10048519	10048719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-10.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	79.95	60.87	71.31	82.05	70.77	90.0	71.75	83.5	90.08	79.83	115.07	35.71
Merged-chr1-144004228-3	chr1	144004135	144004335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-86.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	320.61	273.91	298.35	317.74	298.65	354.02	242.48	333.09	364.66	388.63	532.63	217.41
Merged-chr2-23156032-3	chr2	23155930	23156130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-6.0	NM_025979	67121.0	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	192.21	234.42	239.02	198.69	175.51	237.69	152.8	161.66	268.28	261.09	314.55	182.95
Merged-chr5-106964378-3	chr5	106964298	106964498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009863)	promoter-TSS (NM_009863)	76.0	NM_009863	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	28.67	36.22	39.36	39.42	41.73	38.88	58.46	44.13	36.78	31.13	33.67	27.25
Merged-chr7-137421504-1	chr7	137421404	137421604	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-10748.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	2.83	3.27	7.99	4.02	3.68	0.94	2.66	2.3	6.29	7.53	17.08	10.02
Merged-chr13-63431718-3	chr13	63431614	63431814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042673)	promoter-TSS (NM_001042673)	31.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	85.6	48.04	64.46	46.66	50.32	105.05	63.78	49.68	90.48	93.39	97.98	48.87
Merged-chr19-46304631-3	chr19	46304516	46304716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-121.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	201.49	198.2	211.64	165.71	195.55	268.1	179.04	149.36	209.67	250.55	231.14	150.05
Merged-chr10-22166213-3	chr10	22166125	22166325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	-7272.0	NM_198193	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	27.86	26.16	22.82	28.56	32.73	38.88	29.23	18.31	43.47	56.24	43.21	24.75
Merged-chr13-88459700-3	chr13	88459595	88459795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-361777.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	89.64	70.18	56.48	82.05	96.96	90.94	56.8	96.56	122.73	91.38	115.57	67.04
Merged-chr19-7018425-4	chr19	7018333	7018533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1036.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	16.56	25.15	23.96	23.33	19.64	21.64	17.94	14.92	23.6	27.11	29.14	20.05
Merged-chr8-128357308-3	chr8	128357203	128357403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1770.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	56.53	42.01	49.63	51.48	24.55	26.65	33.88	30.56	43.66	39.67	53.77	23.49
Merged-chr10-84412776-3	chr10	84412695	84412895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	27676.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	57.34	40.75	55.33	71.99	29.86	59.89	38.53	50.5	36.58	31.63	42.71	25.69
Merged-chr16-17492377-3	chr16	17492280	17492480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291070, intron 1 of 19)	intron (NM_001291070, intron 1 of 19)	459.0	NM_001291070	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	14.94	29.93	38.22	26.95	13.5	25.71	11.96	19.82	24.98	23.1	41.2	26.31
Merged-chr17-33824545-3	chr17	33824420	33824620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	42.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	62.99	72.69	86.14	61.54	72.0	54.25	27.24	22.79	90.48	84.86	54.27	68.29
Merged-chr8-70610290-3	chr8	70610187	70610387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1973.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	159.5	128.53	152.31	137.95	153.82	174.97	105.3	151.91	178.99	172.22	228.13	95.23
Merged-chr5-76522645-3	chr5	76522520	76522720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-6687.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	35.94	22.89	30.23	36.2	31.09	35.12	32.55	49.15	39.53	30.63	36.68	20.99
Merged-chr7-127588213-3	chr7	127588091	127588291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	404.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	52.9	51.56	53.05	43.44	54.82	63.66	42.19	41.72	75.53	77.32	81.9	43.54
Merged-chr6-34907371-3	chr6	34907270	34907470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3461.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	56.13	44.77	45.64	18.9	75.28	94.39	71.75	75.34	90.28	61.76	50.25	42.92
Merged-chr16-84835362-3	chr16	84835263	84835463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	239.0	NM_008065	14390.0	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	37.55	39.24	41.07	50.27	45.41	45.78	52.82	35.05	76.12	80.34	105.52	74.24
Merged-chr4-8691124-3	chr4	8691020	8691220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	CpG	714.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	23.02	15.59	35.37	20.91	21.27	13.17	16.28	35.05	20.06	23.1	26.13	14.1
Merged-chr10-57486792-3	chr10	57486667	57486867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	382.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	27.46	24.65	29.09	17.7	18.41	19.76	28.23	24.87	26.36	21.09	22.61	17.86
Merged-chr6-39230882-3	chr6	39230792	39230992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-24119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	97.72	118.97	108.96	139.97	134.6	127.62	114.93	124.63	113.49	85.86	143.71	78.94
Merged-chr12-98249887-3	chr12	98249811	98250011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	9548.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	38.36	15.85	27.38	26.14	56.87	27.91	31.89	48.79	55.07	48.7	47.23	34.15
Merged-chr4-32570170-3	chr4	32570045	32570245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	1517.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	74.7	85.27	108.96	119.86	116.19	131.07	132.87	155.08	128.63	85.36	196.47	105.26
Merged-chr1-55506593-3	chr1	55506506	55506706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	MIR|SINE|MIR	100660.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	69.05	74.96	65.03	76.02	68.32	108.5	59.46	85.6	106.41	73.31	112.05	53.88
Merged-chr9-106821840-3	chr9	106821719	106821919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001015507)	promoter-TSS (NM_001015507)	-157.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	142.54	133.31	151.74	101.76	121.09	157.73	97.66	99.98	208.29	232.47	208.03	124.68
Merged-chr15-75842013-3	chr15	75841924	75842124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172121)	promoter-TSS (NM_172121)	-116.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	68.24	63.89	72.45	54.3	76.09	104.11	55.8	87.2	122.73	96.91	83.41	57.64
Merged-chr4-156197502-3	chr4	156197411	156197611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-23.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	44.82	41.0	43.35	43.44	39.27	68.36	50.82	43.93	66.28	59.25	76.38	36.65
Merged-chr10-121740280-3	chr10	121740154	121740354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359720, intron 1 of 2)	intron (NM_001359720, intron 1 of 2)	324.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	14.13	14.59	10.27	12.07	11.45	16.62	13.62	18.25	12.98	17.07	23.11	14.72
Merged-chr12-4769149-3	chr12	4769047	4769247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361147)	promoter-TSS (NM_001361147)	120.0	NM_175431	207921.0	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	48.05	61.88	99.83	85.27	71.59	72.44	120.91	63.14	61.17	97.91	78.89	61.71
Merged-chr12-8637145-3	chr12	8637031	8637231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37003.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	107.01	83.76	128.35	98.94	97.37	170.9	65.11	105.62	115.65	112.47	129.64	73.93
Merged-chr2-76070550-3	chr2	76070447	76070647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88580.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	21.8	23.39	23.96	23.33	27.0	24.77	15.28	30.56	28.32	17.57	48.74	20.36
Merged-chr18-23903057-3	chr18	23902967	23903167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51621.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	28.67	23.14	29.66	34.19	64.64	74.63	52.82	64.01	52.32	48.2	60.8	36.03
Merged-chr7-99141285-3	chr7	99141184	99141384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-140.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	246.72	300.32	355.39	324.17	305.6	358.73	273.04	279.65	359.55	370.05	415.55	223.99
Merged-chr14-65345669-3	chr14	65345582	65345782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12994.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	87.22	101.37	118.65	131.52	99.82	97.52	82.05	92.16	117.23	104.94	104.01	80.51
Merged-chr6-122653916-3	chr6	122653824	122654024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	27500.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	16.96	12.58	24.53	16.89	13.5	13.17	9.3	8.61	33.63	28.62	21.61	12.53
Merged-chr19-7483290-3	chr19	7483190	7483390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	1.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	135.27	149.66	100.4	115.83	150.55	128.25	77.06	84.87	123.72	191.8	150.74	103.38
Merged-chr11-120492749-3	chr11	120492638	120492838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013770, intron 1 of 10)	intron (NM_013770, intron 1 of 10)	901.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	53.7	51.06	49.63	26.55	57.68	74.0	25.58	28.93	52.52	49.71	66.33	27.57
Merged-chr1-171234726-3	chr1	171234629	171234829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-380.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	16.96	23.14	38.22	27.35	26.59	26.65	24.25	28.68	26.36	27.11	29.14	24.75
Merged-chr13-51946373-3	chr13	51946274	51946474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99699.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	84.8	68.67	71.31	87.68	79.37	93.76	63.44	90.08	107.59	105.44	117.58	57.64
Merged-chr11-101009431-3	chr11	101009323	101009523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-29.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	81.16	66.91	96.98	92.1	80.18	121.35	38.2	77.94	131.78	108.45	112.56	76.75
Merged-chr4-150909913-3	chr4	150909794	150909994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	27.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	113.47	91.81	103.82	89.29	132.55	122.92	73.41	99.0	163.05	177.24	132.66	80.82
Merged-chr5-130144762-3	chr5	130144611	130144811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-177.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	139.31	168.52	156.88	177.37	176.73	187.52	208.6	182.78	245.66	225.45	359.78	168.22
Merged-chr10-80039815-3	chr10	80039718	80039918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-159.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	159.9	121.74	138.05	114.22	143.19	182.5	105.63	115.21	157.94	173.23	196.97	84.58
Merged-chr7-19308737-3	chr7	19308616	19308816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347586, intron 1 of 4)	CpG	1329.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	150.21	152.93	213.35	163.7	183.69	150.2	147.48	181.04	199.44	240.51	298.98	156.32
Merged-chr3-116122920-3	chr3	116122820	116123020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	6768.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	17.77	29.18	41.64	33.78	34.36	27.59	34.21	55.74	24.0	19.08	34.17	27.25
Merged-chr8-85515602-3	chr8	85515496	85515696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22979.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	31.5	18.61	31.38	26.55	27.41	25.09	42.85	46.23	31.47	28.12	66.33	30.39
Merged-chr12-76404198-3	chr12	76404109	76404309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	33.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	220.07	194.18	268.69	265.85	255.28	252.43	218.9	268.91	322.77	353.48	367.82	221.79
Merged-chr10-99443646-3	chr10	99443545	99443745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165526.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	35.53	37.98	49.63	33.38	66.27	52.68	43.51	55.85	49.96	30.13	64.82	29.45
Merged-chr3-97901181-3	chr3	97901092	97901292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011342)	promoter-TSS (NM_011342)	-35.0	NM_011342	20333.0	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	33.92	41.5	34.23	53.09	47.87	58.95	31.22	38.66	42.88	46.19	56.78	26.0
Merged-chr10-94913563-3	chr10	94913485	94913685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	30993.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	31.09	23.14	32.52	42.63	33.96	37.94	29.56	49.12	37.96	28.12	51.25	39.16
Merged-chr18-84785371-3	chr18	84785268	84785468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	41301.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	122.75	101.87	115.23	139.16	147.28	142.36	111.94	171.87	156.96	138.08	180.39	114.97
Merged-chr15-31602199-3	chr15	31602104	31602304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	88.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	34.73	48.29	51.91	55.91	50.32	50.8	43.51	40.46	50.35	28.62	56.28	32.89
Merged-chr3-89394210-3	chr3	89394122	89394322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-68.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	23.82	17.1	14.26	9.25	21.68	21.95	19.93	13.32	25.18	24.1	18.59	14.1
Merged-chr10-67185702-3	chr10	67185594	67185794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242396)	promoter-TSS (NM_001242396)	-56.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	112.26	81.24	78.15	84.06	101.87	121.04	42.85	84.39	99.92	115.48	120.09	73.62
Merged-chr7-132656289-3	chr7	132656199	132656399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	45656.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	18.57	14.84	22.82	15.28	20.05	19.13	12.29	15.87	21.05	27.62	24.12	10.65
Merged-chr2-5064060-3	chr2	5063974	5064174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	43.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	86.41	69.67	62.18	53.89	51.14	78.08	45.18	56.8	117.23	115.48	106.02	51.38
Merged-chr11-116110302-3	chr11	116110192	116110392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-57.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	33.11	30.94	20.54	35.8	29.86	35.75	17.61	22.99	25.77	27.62	38.69	23.18
Merged-chr8-46395554-3	chr8	46395465	46395665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-75472.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	29.88	51.31	59.9	43.04	42.55	38.26	32.88	62.16	66.09	48.2	70.85	40.1
Merged-chr3-40540831-3	chr3	40540750	40540950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	83.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	36.34	48.04	34.8	46.25	57.27	64.91	60.46	65.3	48.78	48.2	58.79	31.33
Merged-chr7-141467394-3	chr7	141467309	141467509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	47.0	NM_001111049	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	18.57	31.44	28.52	36.6	29.05	26.65	27.9	16.51	24.0	31.63	40.2	17.54
Merged-chr10-22731421-3	chr10	22731290	22731490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	57.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	102.16	121.99	103.25	130.31	96.55	120.73	84.04	91.88	155.97	123.52	170.34	79.57
Merged-chr1-40240656-3	chr1	40240560	40240760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	15580.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	27.46	36.97	37.65	27.35	31.91	42.65	40.52	38.69	27.34	41.67	45.22	22.87
Merged-chr3-79154190-1	chr3	79154090	79154290	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-8315.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.63	3.02	7.42	4.83	17.18	8.78	3.99	12.25	4.52	6.53	5.02	6.89
Merged-chr15-51991824-3	chr15	51991715	51991915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-55.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	180.9	197.45	156.31	209.95	184.91	222.32	177.05	219.95	270.64	282.18	358.77	181.69
Merged-chrX-13281005-3	chrX	13280898	13281098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010028)	promoter-TSS (NM_010028)	-24.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	54.51	58.86	38.22	53.89	46.23	66.48	38.2	45.39	94.8	82.35	74.87	53.57
Merged-chr14-121366393-3	chr14	121366283	121366483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	12847.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	28.27	11.07	13.69	22.52	29.46	19.44	23.92	30.17	24.78	9.54	26.63	12.22
Merged-chr2-68879276-3	chr2	68879171	68879371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	17830.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	39.98	41.5	25.67	24.13	33.55	62.71	44.84	32.69	71.2	78.33	63.31	34.77
Merged-chr17-37203755-3	chr17	37203656	37203856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5790.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	42.8	51.06	47.92	48.67	27.41	43.9	19.27	43.57	44.06	33.14	40.7	25.06
Merged-chr4-138214046-2	chr4	138213936	138214136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2576.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	16.96	32.95	25.67	12.87	32.32	17.87	19.6	24.76	5.31	7.03	4.52	8.14
Merged-chr2-50690294-3	chr2	50690183	50690383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	32.71	33.96	27.38	24.53	66.27	43.9	43.85	42.98	42.09	52.22	57.28	26.31
Merged-chr16-30972130-3	chr16	30972047	30972247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	109285.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	25.44	14.34	29.09	26.95	34.77	34.49	34.55	32.33	31.08	23.1	33.16	27.57
Merged-chr2-36244886-3	chr2	36244771	36244971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	14445.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	41.99	36.22	67.88	69.18	40.91	26.65	39.86	75.11	39.93	24.1	56.78	47.62
Merged-chr7-101451198-3	chr7	101451032	101451232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	116.0	NR_152193	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	13.73	24.65	24.53	22.93	24.14	26.34	27.9	16.04	13.96	13.05	14.07	15.35
Merged-chr7-90040671-3	chr7	90040572	90040772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	11513.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	44.82	24.4	55.9	51.08	36.82	50.8	63.11	82.23	49.76	30.13	55.27	30.07
Merged-chr9-25519390-3	chr9	25519292	25519492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	37795.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	57.34	48.8	86.71	69.98	110.87	96.58	105.63	132.42	103.26	79.33	125.62	75.18
Merged-chr2-29802645-3	chr2	29802555	29802755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-25.0	NM_011989	26569.0	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	54.51	36.47	39.36	45.05	58.09	74.0	47.5	60.45	50.35	52.72	82.91	30.07
Merged-chr2-150749575-1	chr2	150749475	150749675	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	494.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	22.61	19.87	20.54	14.88	25.36	26.34	16.94	17.02	23.8	34.65	39.7	18.8
Merged-chr16-13256491-5	chr16	13256399	13256599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122667)	promoter-TSS (NM_001122667)	18.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	29.88	21.63	18.25	21.32	31.91	34.81	15.61	32.16	51.53	56.74	52.26	38.22
Merged-chr11-73138351-3	chr11	73138246	73138446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-52.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	54.51	51.31	47.35	54.3	66.68	81.53	43.18	51.42	76.31	81.34	91.45	39.78
Merged-chr5-77095218-3	chr5	77095109	77095309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159901)	promoter-TSS (NM_001159901)	58.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	35.13	18.86	37.08	33.78	12.27	14.42	15.28	17.44	19.28	25.11	44.22	19.11
Merged-chr2-166623340-3	chr2	166623229	166623429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	58807.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	67.43	51.31	53.05	51.88	59.32	59.89	44.84	61.91	51.53	51.21	68.84	30.39
Merged-chr19-8953752-3	chr19	8953649	8953849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-83.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	88.84	93.32	120.37	79.23	77.32	98.15	75.73	68.3	119.0	126.53	114.06	64.53
Merged-chr16-10976322-3	chr16	10976224	10976424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	16797.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	166.36	126.02	174.56	141.98	163.23	199.43	195.98	181.63	212.42	215.4	264.31	120.61
Merged-chr12-98375553-5	chr12	98375492	98375692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	106957.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	15.75	35.97	22.82	27.35	25.77	26.97	32.88	26.52	25.77	32.13	29.14	28.19
Merged-chr8-106415328-3	chr8	106415220	106415420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011764)	promoter-TSS (NM_011764)	-19.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	117.5	96.34	111.24	101.76	109.64	104.73	71.75	97.26	107.59	107.45	140.19	74.24
Merged-chr6-29348049-3	chr6	29347938	29348138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_184053)	promoter-TSS (NM_184053)	-68.0	NM_001285412	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	186.15	182.61	235.6	161.68	224.19	273.75	126.89	220.85	221.47	200.34	250.74	126.25
Merged-chr7-104446516-3	chr7	104446422	104446622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-397.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	33.11	34.46	32.52	36.2	48.68	46.72	22.26	36.17	47.21	41.67	62.81	24.12
Merged-chr11-59839372-3	chr11	59839278	59839478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011991, intron 1 of 11)	CpG	389.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	59.76	61.88	50.2	43.84	53.59	67.1	26.24	45.36	89.3	73.81	86.93	59.83
Merged-chr5-129908586-3	chr5	129908480	129908680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026916)	promoter-TSS (NM_026916)	40.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	50.88	51.81	54.76	62.74	57.68	66.16	62.78	51.34	83.79	79.83	96.98	57.01
Merged-chr16-3732802-3	chr16	3732707	3732907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11292.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	52.49	41.0	38.79	38.21	83.46	108.81	65.44	79.6	75.53	91.38	92.96	43.23
Merged-chr10-20772246-3	chr10	20772109	20772309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47131.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	62.59	49.05	76.44	50.68	56.87	58.64	34.55	53.19	60.78	52.22	46.73	26.0
Merged-chr10-59879581-3	chr10	59879495	59879695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	4.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	88.84	89.8	82.72	68.78	87.55	108.18	77.06	83.08	108.18	153.14	163.81	84.9
Merged-chr9-55149864-3	chr9	55149731	55149931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346658)	promoter-TSS (NM_001346658)	-252.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	19.79	17.1	19.97	20.91	14.32	16.93	27.9	12.17	14.36	16.07	15.07	23.18
Merged-chr7-121707467-3	chr7	121707370	121707570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-217.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	56.94	52.82	65.03	84.46	86.73	71.18	42.85	76.77	101.49	89.37	124.11	67.35
Merged-chr14-63448031-3	chr14	63447905	63448105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	11611.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	45.63	26.91	38.79	35.39	45.41	46.41	34.21	43.46	62.74	77.32	61.81	38.22
Merged-chr17-24455377-3	chr17	24455295	24455495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-3.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	168.79	103.88	116.94	137.15	145.23	180.62	92.68	110.55	159.71	176.24	145.22	101.81
Merged-chr11-54729533-3	chr11	54729444	54729644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	58159.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	22.61	33.7	54.76	24.53	35.18	65.85	30.89	37.32	46.03	44.19	45.22	36.97
Merged-chr1-151625452-3	chr1	151625357	151625557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54084.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	26.25	21.63	37.65	24.94	56.05	45.15	15.61	33.98	39.14	39.16	34.67	22.24
Merged-chr7-41633894-1	chr7	41633794	41633994	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360684)	promoter-TSS (NM_001360684)	363.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	24.63	35.21	34.23	45.05	54.41	41.71	38.86	42.06	53.89	41.17	68.84	29.13
Merged-chr7-130547380-3	chr7	130547290	130547490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-9.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	38.76	52.57	41.07	59.53	45.41	53.31	41.52	52.74	66.68	56.74	85.92	34.46
Merged-chr5-23433421-3	chr5	23433329	23433529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	924.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	101.76	105.64	127.78	144.39	112.5	135.78	90.02	131.97	200.82	185.78	195.97	118.41
Merged-chr12-35535079-3	chr12	35534970	35535170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	-81.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	58.55	56.09	57.62	67.17	59.32	53.31	37.87	60.81	64.32	61.76	85.42	44.17
Merged-chr3-19163180-3	chr3	19163074	19163274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-79.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	223.3	226.63	229.32	259.02	241.78	272.18	188.67	298.29	224.62	236.49	299.48	153.81
Merged-chr13-9760216-3	chr13	9760125	9760325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	3585.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	116.29	107.4	156.31	130.71	109.64	120.41	145.82	225.34	162.27	167.2	207.02	127.81
Merged-chr12-86884861-3	chr12	86884732	86884932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	-18.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	62.59	54.83	67.31	57.92	74.46	88.74	53.81	55.79	111.52	109.46	126.12	88.34
Merged-chr9-24298421-3	chr9	24298325	24298525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175678, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	200407.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	31.9	38.74	51.34	58.72	38.46	38.57	49.83	70.91	53.11	36.65	97.98	32.58
Merged-chr3-148221048-3	chr3	148220931	148221131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	733604.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	113.06	135.83	135.77	134.74	186.55	208.53	153.46	217.35	138.67	153.14	177.88	109.96
Merged-chr16-36711977-3	chr16	36711901	36712101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	18023.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	172.02	163.49	168.28	177.77	189.41	222.01	109.95	168.53	159.32	166.2	204.01	107.76
Merged-chr15-82338958-3	chr15	82338903	82339103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-177.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	102.56	110.17	79.29	88.08	119.87	134.84	67.43	85.15	139.65	127.53	127.13	72.99
Merged-chr8-69901690-3	chr8	69901579	69901779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032004)	promoter-TSS (NM_032004)	-505.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	109.43	100.11	99.83	79.64	84.68	111.32	60.46	83.86	117.62	106.45	88.94	74.24
Merged-chr17-81536329-3	chr17	81536223	81536423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	202064.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	52.9	43.26	66.74	54.7	42.96	50.17	47.5	65.27	54.09	53.22	62.81	29.76
Merged-chr5-123228225-3	chr5	123228124	123228324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026000)	promoter-TSS (NM_026000)	34.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	29.48	32.7	26.24	18.9	33.14	52.05	12.29	18.67	57.63	58.24	22.61	28.19
Merged-chr4-46389293-5	chr4	46389207	46389407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347095, intron 1 of 4)	CpG	116.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	16.56	16.1	18.83	16.89	11.05	13.48	10.63	15.62	105.03	109.96	61.81	64.53
Merged-chr19-32951004-3	chr19	32950898	32951098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	193421.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	31.09	25.66	54.76	46.25	45.0	42.02	32.22	47.13	48.39	37.16	54.77	31.95
Merged-chr9-38728405-3	chr9	38728311	38728511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 9 of 18)	intron (NM_001145957, intron 9 of 18)	10143.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	53.3	53.83	88.42	112.21	92.46	74.63	105.96	154.57	89.3	96.4	146.72	81.45
Merged-chr7-3707210-3	chr7	3707077	3707277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029767)	TTS (NM_029767)	3136.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	90.85	101.11	94.13	131.92	99.82	142.99	101.31	96.51	86.74	77.32	129.14	49.81
Merged-chr5-96911739-3	chr5	96911642	96911842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9530.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	120.73	95.58	152.31	109.0	96.14	116.34	110.28	120.84	123.91	132.56	174.36	84.27
Merged-chr10-63244238-1	chr10	63244138	63244338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359484, intron 1 of 22)	CpG	441.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	25.84	17.86	25.67	22.12	24.96	32.93	32.22	16.01	33.24	32.13	35.68	17.86
Merged-chr5-33658037-3	chr5	33657939	33658139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310541)	promoter-TSS (NM_001310541)	-62.0	NM_001356985	68366.0	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	163.13	152.93	175.7	176.57	179.19	209.47	146.82	165.67	225.21	197.83	284.91	143.48
Merged-chr5-123524235-3	chr5	123524105	123524305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023232)	promoter-TSS (NM_023232)	-41.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	54.92	40.5	33.09	45.85	49.09	69.93	32.55	47.1	81.04	96.91	81.4	52.94
Merged-chr4-138943909-3	chr4	138943826	138944026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23186.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	53.7	33.2	46.21	45.05	31.91	34.49	16.61	37.54	58.81	46.7	61.3	44.48
Merged-chr9-21166253-3	chr9	21166161	21166361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	CpG	547.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	29.48	28.67	19.97	16.49	12.27	28.22	20.93	22.23	32.85	37.66	34.17	30.07
Merged-chr11-21571987-3	chr11	21571875	21572075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-41.0	NM_001316675	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	206.74	263.1	253.85	294.01	208.23	238.32	209.6	238.88	306.44	315.32	440.68	192.03
Merged-chr16-49791180-3	chr16	49791080	49791280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64474.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	62.18	47.29	43.93	24.53	79.37	103.79	66.1	32.07	70.61	60.25	66.83	14.72
Merged-chr11-70789473-3	chr11	70789372	70789572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	27.86	26.66	27.95	24.53	34.77	39.2	16.61	20.97	46.03	36.15	39.7	21.93
Merged-chr2-174439648-3	chr2	174439544	174439744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-605.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	86.01	69.42	54.76	51.48	95.73	99.09	80.05	87.93	134.34	127.03	127.63	78.63
Merged-chr1-171326803-1	chr1	171326703	171326903	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2005.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.0	0.25	0.0	0.0	0.0	0.0	0.0	0.22	31.08	22.09	47.23	23.18
Merged-chr3-10351418-3	chr3	10351308	10351508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331015)	promoter-TSS (NM_001331015)	-91.0	NM_001331014	66361.0	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	191.8	148.9	162.01	211.96	193.51	242.39	223.22	206.61	254.32	194.31	342.69	145.36
Merged-chr10-70243292-3	chr10	70243185	70243385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1991.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	78.34	47.04	73.59	56.71	72.82	63.03	73.08	91.91	73.76	89.88	133.66	70.48
Merged-chr2-122738453-3	chr2	122738322	122738522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019788)	promoter-TSS (NM_019788)	-83.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	82.37	91.3	98.12	88.08	97.37	103.48	73.08	70.6	119.59	107.95	163.81	66.73
Merged-chr10-125388764-4	chr10	125388668	125388868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59805.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	10.5	14.34	19.97	25.74	9.0	11.92	18.27	13.71	11.41	24.1	11.05	14.1
Merged-chr12-80260503-3	chr12	80260388	80260588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-107.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	151.83	129.29	141.47	134.74	120.28	136.09	96.66	120.03	106.6	122.51	114.06	70.48
Merged-chr2-25356392-3	chr2	25356286	25356486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-54.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	35.94	32.45	27.38	37.4	40.09	33.87	18.93	31.65	55.47	57.24	38.19	18.17
Merged-chr2-136532208-1	chr2	136532108	136532308	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175667)	promoter-TSS (NM_175667)	-113.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	6.06	3.02	1.14	7.24	30.27	24.15	40.86	46.91	4.13	5.02	4.52	2.51
Merged-chr13-74062240-3	chr13	74062149	74062349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028959)	promoter-TSS (NM_028959)	36.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	55.32	64.64	70.74	81.65	79.37	65.85	97.66	72.08	73.76	88.87	97.48	53.26
Merged-chr14-61696579-3	chr14	61696482	61696682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14209.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	36.34	24.4	41.07	21.32	44.59	45.15	43.85	48.67	35.6	60.75	35.68	20.68
Merged-chr5-108669229-3	chr5	108669145	108669345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_174870)	TTS (NM_174870)	5551.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	66.63	54.83	55.33	59.12	79.37	79.02	65.44	62.75	83.99	119.0	112.05	50.12
Merged-chr4-11026443-3	chr4	11026310	11026510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-18791.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	45.23	34.96	45.64	46.25	41.73	45.15	27.9	45.06	54.09	51.72	55.27	24.75
Merged-chr11-30026086-3	chr11	30025973	30026173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-40.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	230.97	272.4	233.89	276.31	225.42	311.69	224.22	300.76	287.16	311.31	387.92	198.61
Merged-chr9-57521634-2	chr9	57521537	57521737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	CpG	405.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	25.44	32.95	30.23	24.94	25.36	38.26	32.88	21.67	33.44	38.16	26.63	22.56
Merged-chr10-40300873-3	chr10	40300768	40300968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009665, intron 1 of 7)	CpG	1318.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	40.38	35.97	25.67	43.84	32.32	38.88	38.53	58.85	35.4	37.66	81.9	31.64
Merged-chr12-86079537-3	chr12	86079442	86079642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-501.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	34.73	21.38	39.93	53.49	43.77	39.2	34.88	40.85	53.89	54.73	77.38	31.95
Merged-chr12-84451191-3	chr12	84451098	84451298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173756)	promoter-TSS (NM_173756)	-174.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	206.34	205.0	197.38	209.95	218.05	295.7	248.13	216.84	301.92	300.76	304.5	193.29
Merged-chr1-46873970-3	chr1	46873867	46874067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20349.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	20.59	20.37	32.52	41.83	32.73	40.76	44.51	67.26	42.48	40.67	85.92	26.94
Merged-chr13-90923031-5	chr13	90922950	90923150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024175)	promoter-TSS (NM_024175)	-72.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	57.34	64.89	47.35	80.44	92.87	87.49	79.39	64.74	65.1	106.45	74.37	38.53
Merged-chr6-85961222-3	chr6	85961103	85961303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028099, intron 1 of 8)	CpG	464.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	27.05	21.38	14.26	14.08	27.82	23.83	31.56	34.37	41.11	36.15	52.26	22.24
Merged-chr18-37644260-3	chr18	37644176	37644376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-72.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	184.94	159.72	200.23	190.24	173.46	185.95	149.14	200.69	269.86	257.58	239.68	106.51
Merged-chr10-33950887-1	chr10	33950787	33950987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359455, intron 1 of 10)	intron (NM_001359455, intron 1 of 10)	372.0	NM_001359456	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	23.82	15.34	22.25	12.07	15.55	17.25	17.27	18.39	15.74	12.55	15.58	14.72
Merged-chr7-97355350-3	chr7	97355257	97355457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16260.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	75.51	71.69	71.31	63.15	73.64	101.91	71.08	74.19	65.89	74.31	108.54	40.41
Merged-chr4-152008883-3	chr4	152008804	152009004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	13.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	180.9	180.85	166.0	191.45	244.23	322.67	248.13	257.13	231.5	286.7	320.08	155.38
Merged-chr2-119547632-3	chr2	119547539	119547739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	-12.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	123.56	112.18	159.16	125.08	147.69	176.54	122.9	146.41	164.43	174.23	222.1	125.31
Merged-chr14-54735720-3	chr14	54735630	54735830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016972, exon 5 of 11)	exon (NM_016972, exon 5 of 11)	-23556.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	28.67	31.44	19.4	19.71	31.5	28.54	23.25	27.67	28.72	23.6	24.62	16.6
Merged-chr10-37339785-3	chr10	37339658	37339858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200832.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	29.48	44.52	28.52	28.56	59.73	87.8	32.55	37.96	70.61	57.24	45.22	16.29
Merged-chr9-44462182-3	chr9	44462129	44462329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7462.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	39.98	28.67	39.93	37.0	34.36	39.82	26.91	49.77	47.01	36.65	37.18	30.7
Merged-chr5-65309080-3	chr5	65308967	65309167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 4 of 24)	MTE2b|LTR|ERVL-MaLR	26572.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	31.5	31.44	47.35	48.67	38.05	41.08	35.21	47.41	40.71	24.1	69.34	29.45
Merged-chr5-20256740-3	chr5	20256625	20256825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349207.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	18.17	14.59	23.96	34.59	25.77	23.52	20.26	42.28	28.32	20.59	32.66	18.17
Merged-chr15-81926260-3	chr15	81926158	81926358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030229)	promoter-TSS (NM_030229)	-45.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	166.36	126.27	117.51	106.99	130.91	211.66	89.02	116.1	197.08	179.25	187.93	109.64
Merged-chr5-73647611-3	chr5	73647535	73647735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011890)	promoter-TSS (NM_011890)	96.0	NM_011890	24051.0	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	25.84	42.76	38.79	35.8	44.59	31.04	44.84	43.6	33.04	35.15	48.74	27.25
Merged-chr6-91679216-3	chr6	91679115	91679315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4852.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	37.15	36.22	34.8	43.84	40.91	75.26	40.52	69.56	49.96	45.69	67.33	42.6
Merged-chr5-102034326-3	chr5	102034241	102034441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35580.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	36.34	18.11	32.52	57.92	51.96	50.49	51.49	71.66	35.99	38.16	66.33	43.86
Merged-chr6-34863076-3	chr6	34862996	34863196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-50.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	40.38	53.32	42.21	42.23	49.09	58.01	28.9	51.67	68.45	65.27	66.83	41.66
Merged-chr7-101905834-3	chr7	101905733	101905933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-4.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	151.42	177.58	170.57	153.24	171.82	226.71	157.12	157.35	184.49	197.83	219.08	138.15
Merged-chr4-47275153-3	chr4	47275052	47275252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67140.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	87.22	66.65	54.76	26.14	74.46	102.85	43.18	48.11	92.05	83.35	73.86	37.28
Merged-chr3-103872750-3	chr3	103872642	103872842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	12465.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	27.46	17.36	39.36	49.07	33.96	23.83	24.91	40.88	40.52	34.14	40.2	33.52
Merged-chr15-89174062-3	chr15	89173948	89174148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-97.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	59.76	43.01	23.96	26.14	45.82	45.78	34.21	45.03	42.88	36.15	63.82	22.56
Merged-chr5-124439782-3	chr5	124439675	124439875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030241)	promoter-TSS (NM_030241)	-155.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	211.19	165.76	220.77	174.55	158.73	238.0	162.1	181.18	205.74	243.02	223.1	132.2
Merged-chr5-29434703-3	chr5	29434583	29434783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033457)	promoter-TSS (NM_001033457)	16.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	40.38	20.63	33.66	47.06	50.32	63.34	35.21	63.7	48.78	47.2	77.38	53.26
Merged-chr17-81572987-1	chr17	81572887	81573087	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	RMER19B2|LTR|ERVK	165400.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.25	2.01	8.56	4.83	11.45	4.08	3.65	8.89	3.34	2.51	6.03	3.13
Merged-chr7-45921477-3	chr7	45921367	45921567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-41.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	23.42	22.64	26.81	23.33	33.96	46.41	20.93	34.57	22.23	23.1	38.69	16.92
Merged-chr17-56008466-3	chr17	56008359	56008559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	-323.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	56.13	53.58	66.17	55.1	78.55	89.05	37.2	68.5	79.46	65.27	89.94	42.29
Merged-chrX-134756591-3	chrX	134756506	134756706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358520)	promoter-TSS (NM_001358520)	54.0	NM_001358520	71703.0	Mm.67949	NM_027870	ENSMUSG00000049047	Armcx3	1200004E24Rik|AI450003|ALEX3	armadillo repeat containing, X-linked 3	protein-coding	33.92	28.17	17.11	28.15	32.32	53.62	19.6	30.87	45.83	57.74	53.77	26.63
Merged-chr3-38565064-3	chr3	38564977	38565177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-80261.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	16.56	15.85	29.09	22.52	56.87	38.57	53.81	93.17	71.2	54.73	90.45	51.69
Merged-chr9-124424654-3	chr9	124424562	124424762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	875.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	146.17	127.78	98.69	71.59	110.46	144.24	65.44	100.12	147.91	150.13	148.73	94.29
Merged-chr18-44828518-3	chr18	44828449	44828649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-116.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	69.86	77.97	42.78	71.59	61.77	43.59	68.43	59.1	44.84	48.7	55.78	47.62
Merged-chr11-98816939-3	chr11	98816840	98817040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-6851.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	44.42	41.5	65.03	52.29	36.0	44.84	32.55	44.36	46.22	34.65	44.72	28.51
Merged-chr6-28421726-3	chr6	28421630	28421830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-6.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	139.71	125.26	168.28	117.44	159.96	156.47	131.87	158.24	201.41	201.85	249.23	135.33
Merged-chr2-154436321-3	chr2	154436236	154436436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-148.0	NM_172860	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	207.95	174.31	199.66	157.26	243.42	269.36	174.39	199.21	214.78	233.98	301.99	113.4
Merged-chr19-23114642-3	chr19	23114546	23114746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26580.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	16.56	12.32	2.85	17.7	29.05	23.52	17.94	38.22	36.98	32.13	31.15	25.06
Merged-chr9-102521573-3	chr9	102521470	102521670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024291, intron 4 of 10)	ORR1E|LTR|ERVL-MaLR	15432.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	35.53	36.47	65.03	33.78	30.68	52.68	49.49	49.99	52.91	53.73	79.39	30.07
Merged-chr10-81350563-3	chr10	81350455	81350655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010440)	promoter-TSS (NM_010440)	-98.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	164.75	185.88	185.97	181.39	209.46	221.38	168.08	186.2	223.63	248.54	266.32	106.2
Merged-chr12-3759670-3	chr12	3759584	3759784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-47296.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	39.17	49.3	45.64	51.08	45.82	69.3	34.21	57.45	49.17	40.67	44.72	39.47
Merged-chr15-25830640-3	chr15	25830550	25830750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12648.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	58.55	44.02	58.76	85.67	82.64	91.25	100.32	91.35	111.13	91.38	131.65	60.46
Merged-chr9-106281167-5	chr9	106281079	106281279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027354, exon 1 of 11)	5' UTR (NM_027354, exon 1 of 11)	118.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	26.25	30.69	25.1	28.15	28.64	37.94	27.57	21.64	43.47	54.23	36.68	25.69
Merged-chr10-75893243-3	chr10	75893141	75893341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358985)	promoter-TSS (NM_001358985)	-157.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	126.79	104.13	131.21	119.86	117.82	166.82	118.25	146.8	202.2	196.83	240.69	127.81
Merged-chr19-6951615-3	chr19	6951515	6951715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007522, exon 4 of 4)	3' UTR (NM_007522, exon 4 of 4)	9053.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	93.68	71.18	112.95	80.44	103.5	86.86	59.46	68.69	112.51	111.47	100.5	71.42
Merged-chr14-57398548-3	chr14	57398447	57398647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-64.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	85.2	75.21	93.55	120.26	104.32	119.16	77.73	137.1	120.57	100.92	182.4	84.58
Merged-chr19-42000078-3	chr19	42000006	42000206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	MIR|SINE|MIR	18343.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	68.24	47.79	64.46	55.91	43.77	52.68	51.15	52.85	32.85	46.7	55.78	27.57
Merged-chr10-81633726-3	chr10	81633603	81633803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027480, intron 2 of 19)	intron (NM_027480, intron 2 of 19)	5163.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	76.32	51.06	75.87	93.31	121.09	79.02	100.32	119.24	82.22	81.34	113.06	50.12
Merged-chr12-84004029-3	chr12	84003930	84004130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-5472.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	67.03	44.52	57.05	44.24	78.55	70.87	55.14	58.68	87.72	68.79	55.27	42.92
Merged-chr4-9009897-3	chr4	9009809	9010009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	258585.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	49.26	37.23	74.73	69.58	66.68	46.41	66.77	96.39	64.12	51.72	97.48	46.36
Merged-chr7-16052027-3	chr7	16051939	16052139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19806.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	28.67	22.64	28.52	16.09	22.09	25.71	19.27	33.34	28.91	42.68	46.73	18.8
Merged-chr2-104493594-3	chr2	104493524	104493724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010434, intron 1 of 15)	CpG	865.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	60.97	65.65	56.48	63.55	64.64	58.95	75.73	65.97	81.23	60.25	91.45	60.15
Merged-chr7-49084901-3	chr7	49084804	49085004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	77254.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	22.21	18.86	46.78	34.99	31.91	22.89	28.57	43.79	36.78	31.63	66.83	17.86
Merged-chr6-142391154-3	chr6	142391048	142391248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025872, intron 1 of 4)	intron (NM_025872, intron 1 of 4)	3905.0	NM_025872	66964.0	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	16.15	22.13	21.68	16.09	20.05	24.77	13.62	24.45	31.86	22.59	38.19	18.48
Merged-chr1-105170325-3	chr1	105170231	105170431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-185676.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	37.15	22.64	56.48	56.71	41.32	58.01	50.82	52.91	50.16	59.75	102.51	46.36
Merged-chr13-112800738-3	chr13	112800617	112800817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-60.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	116.29	104.38	130.63	127.9	132.14	124.49	110.95	154.26	152.43	113.48	198.98	81.76
Merged-chr4-141078389-3	chr4	141078293	141078493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-36.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	80.36	82.0	89.56	69.18	77.32	80.27	34.88	58.4	94.02	86.36	86.43	60.77
Merged-chr2-12314197-3	chr2	12314091	12314291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12247.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	89.64	65.4	89.56	87.28	63.0	72.12	70.09	80.58	107.79	71.3	157.78	63.91
Merged-chr17-13010097-3	chr17	13010002	13010202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2263.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	85.2	82.25	58.76	42.23	73.64	154.59	77.06	45.81	123.91	127.03	85.92	43.86
Merged-chr13-36534373-3	chr13	36534299	36534499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	200078.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	106.6	83.51	81.0	124.68	85.5	110.38	72.75	106.18	108.18	133.06	126.12	70.17
Merged-chr8-82383524-3	chr8	82383453	82383653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	19033.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	62.18	67.16	75.87	63.95	58.5	84.66	71.42	74.19	62.15	75.82	64.82	28.19
Merged-chr6-5092946-3	chr6	5092823	5093023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101023.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	40.38	43.77	53.62	37.81	61.37	47.04	38.86	25.77	53.5	44.69	59.29	34.77
Merged-chr1-16688335-3	chr1	16688229	16688429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-127.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	34.32	29.93	59.9	38.21	51.14	58.32	38.2	68.02	79.27	79.33	68.34	34.46
Merged-chr9-103202101-3	chr9	103201987	103202187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009275)	promoter-TSS (NM_009275)	-22.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	58.55	46.78	54.76	88.89	42.14	86.23	68.43	67.65	60.19	72.81	88.94	56.39
Merged-chr19-60818835-3	chr19	60818728	60818928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7273.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	69.45	84.51	108.96	124.68	115.37	109.12	109.95	122.36	118.6	129.04	107.53	72.68
Merged-chr3-79628893-3	chr3	79628806	79629006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	-139.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	350.09	343.84	391.33	460.52	383.74	445.9	362.4	525.34	455.53	469.97	641.67	347.1
Merged-chr12-36187306-3	chr12	36187196	36187396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146033, intron 6 of 9)	intron (NM_146033, intron 6 of 9)	30172.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	76.72	68.67	100.4	94.92	99.0	79.33	92.01	156.65	75.33	72.3	121.1	58.58
Merged-chr14-104867747-3	chr14	104867646	104867846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	228599.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	27.46	30.43	37.08	33.78	38.86	44.21	59.46	58.15	70.81	32.13	46.73	24.43
Merged-chr3-145692240-3	chr3	145692109	145692309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42224.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	19.38	18.36	25.67	45.45	67.5	42.96	74.07	88.18	58.02	63.77	88.44	63.28
Merged-chr11-58009861-3	chr11	58009757	58009957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	CpG	793.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	13.73	28.67	19.97	20.11	20.46	24.15	18.93	15.22	29.31	33.64	36.68	24.12
Merged-chr14-45669912-3	chr14	45669805	45670005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-11762.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	18.57	11.57	25.1	17.7	31.09	24.46	13.95	28.88	47.21	32.13	35.17	17.54
Merged-chr17-45583004-3	chr17	45582928	45583128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9365.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	30.28	39.24	41.64	37.4	33.14	25.09	23.58	21.48	64.32	51.72	57.28	42.29
Merged-chr9-41137264-3	chr9	41137155	41137355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20807.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	48.86	36.72	45.07	33.38	47.05	84.35	53.15	64.15	29.5	23.6	35.17	14.72
Merged-chr19-43530358-3	chr19	43530253	43530453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5748.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	99.74	109.16	103.25	121.46	73.23	97.83	95.0	82.01	74.54	100.42	111.55	74.56
Merged-chr8-46935062-3	chr8	46934964	46935164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51823.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	33.92	26.91	29.09	18.1	30.68	38.57	16.61	23.78	55.47	28.62	52.76	31.01
Merged-chr3-95871462-3	chr3	95871320	95871520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040446)	promoter-TSS (NR_040446)	94.0	NM_078479	66292.0	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik|S21mt	mitochondrial ribosomal protein S21	protein-coding	33.52	18.11	17.11	24.53	31.09	26.65	17.27	21.67	31.27	31.63	19.6	22.56
Merged-chr11-54807924-3	chr11	54807803	54808003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12016.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	40.38	37.98	72.45	55.1	40.5	76.2	46.84	53.27	72.38	65.78	45.73	34.46
Merged-chr16-21590979-3	chr16	21590864	21591064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	103701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	34.73	31.19	55.9	32.18	60.14	64.6	42.85	54.39	52.52	46.19	101.5	33.52
Merged-chr7-27481735-3	chr7	27481634	27481834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5219.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	25.84	41.5	39.93	46.25	51.14	47.04	38.53	58.74	42.68	39.16	54.27	34.46
Merged-chr5-96177192-3	chr5	96177095	96177295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15205.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	45.23	33.7	53.05	65.96	58.91	62.09	70.09	107.3	76.31	61.26	93.46	39.16
Merged-chr5-21056218-3	chr5	21056123	21056323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-312.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	206.74	191.92	224.76	169.73	208.23	240.51	173.39	234.51	266.12	290.72	386.91	163.53
Merged-chr10-11343663-3	chr10	11343542	11343742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	197.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	71.07	65.15	78.15	73.2	58.09	78.71	91.01	94.63	67.46	46.19	78.39	33.83
Merged-chr6-8412975-3	chr6	8412867	8413067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	96194.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	15.34	19.62	25.1	25.74	67.09	76.51	59.79	120.7	48.58	32.13	60.8	29.13
Merged-chr1-160212320-1	chr1	160212220	160212420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	572.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	8.88	17.86	22.82	20.51	13.91	5.64	8.64	8.41	14.95	23.6	9.55	11.59
Merged-chr15-9140426-3	chr15	9140312	9140512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	42.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	135.27	131.55	136.34	150.42	153.41	189.4	128.22	199.29	227.37	189.29	269.33	122.17
Merged-chr5-138622834-3	chr5	138622741	138622941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183025)	promoter-TSS (NM_183025)	-18.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	65.82	51.06	58.76	54.7	87.14	91.88	35.21	75.2	90.28	113.98	111.05	63.28
Merged-chr6-145303106-3	chr6	145303013	145303213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52561.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	64.2	54.08	98.69	62.34	81.82	90.94	85.37	111.87	124.7	80.34	126.63	63.28
Merged-chr11-104252271-1	chr11	104252171	104252371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001038609, intron 1 of 11)	intron (NM_001038609, intron 1 of 11)	20835.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	31.5	17.36	51.91	38.21	2.45	0.0	1.0	2.33	0.98	0.0	0.5	0.31
Merged-chr2-58567654-1	chr2	58567554	58567754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	320.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	18.17	7.29	11.41	14.08	9.41	18.5	13.29	14.1	12.39	13.05	15.58	9.08
Merged-chr10-80148408-1	chr10	80148308	80148508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347117, intron 1 of 7)	CpG	136.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	67.84	77.22	53.05	45.05	31.09	85.92	29.23	22.43	65.69	65.27	51.25	42.29
Merged-chr17-10326735-3	chr17	10326652	10326852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	2150.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	101.35	116.71	113.52	92.1	129.28	149.57	164.76	157.91	144.17	160.67	183.41	99.93
Merged-chr16-38239942-3	chr16	38239840	38240040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	54884.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	25.44	24.9	41.07	26.95	29.05	32.93	25.91	53.36	33.24	36.15	31.15	25.69
Merged-chr16-38341833-3	chr16	38341720	38341920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081025)	promoter-TSS (NM_001081025)	40.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	42.4	35.72	38.22	31.77	36.82	37.63	21.92	28.85	48.39	59.75	57.79	22.87
Merged-chr8-69017597-3	chr8	69017501	69017701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71135.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	42.4	27.17	39.93	40.62	28.23	29.16	23.25	37.65	49.17	36.15	58.29	31.95
Merged-chr7-145284511-3	chr7	145284407	145284607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-496.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	53.7	30.18	69.03	60.73	63.0	78.39	51.15	78.62	86.15	65.78	93.96	54.2
Merged-chrX-8252548-4	chrX	8252432	8252632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290430)	promoter-TSS (NM_001290430)	-126.0	NM_001290430	54632.0	Mm.327529	NM_133991	ENSMUSG00000031171	Ftsj1	AI931847|Ftsj|Ftsjl|Sfc12	FtsJ RNA methyltransferase homolog 1 (E. coli)	protein-coding	14.94	19.62	23.39	23.33	22.09	19.44	12.95	16.6	16.52	17.07	25.12	18.8
Merged-chr1-171617113-3	chr1	171617025	171617225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9715.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	71.88	73.95	87.85	65.16	112.91	134.52	91.68	99.7	106.41	101.43	112.05	67.04
Merged-chr16-87455010-3	chr16	87454920	87455120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024258)	promoter-TSS (NM_024258)	35.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	84.39	66.65	92.98	61.13	69.14	83.1	56.47	86.47	88.9	122.51	169.34	85.84
Merged-chr2-11588151-3	chr2	11588026	11588226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 8 of 11)	MTE2a|LTR|ERVL-MaLR	15073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	40.38	46.53	46.78	58.72	62.18	80.9	71.75	78.28	84.18	54.73	85.42	56.39
Merged-chr9-118662678-3	chr9	118662570	118662770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-49022.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	181.71	214.55	222.48	233.28	252.42	287.55	228.2	273.48	231.11	257.08	359.78	181.69
Merged-chr9-37208226-3	chr9	37208131	37208331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	8.0	NM_025464	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	238.24	211.79	208.22	228.45	289.65	281.27	241.82	298.46	324.14	316.83	454.24	193.91
Merged-chr8-116238840-3	chr8	116238737	116238937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-266178.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	22.21	19.12	35.94	29.36	36.41	22.89	20.59	35.78	37.96	33.14	25.63	27.25
Merged-chr18-82915027-2	chr18	82914924	82915124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	392.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	11.31	16.85	14.26	16.89	11.05	10.98	18.93	12.56	13.96	17.07	24.62	14.41
Merged-chr10-42277755-3	chr10	42277667	42277867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-1005	-1025.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	196.24	223.86	236.17	199.89	223.37	319.53	180.04	233.97	240.75	294.23	350.23	193.91
Merged-chr2-19628360-3	chr2	19628247	19628447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	29550.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	40.38	27.17	66.74	60.33	48.68	50.49	55.8	69.11	58.81	50.71	79.39	36.97
Merged-chr11-8702032-1	chr11	8701932	8702132	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37497.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.83	4.78	3.42	5.63	5.73	5.02	5.65	3.48	30.09	26.61	36.68	14.41
Merged-chr9-64023058-3	chr9	64022956	64023156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-997.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	107.01	121.74	98.69	99.34	103.09	115.71	82.05	88.09	114.08	144.61	149.74	88.03
Merged-chr13-37660273-3	chr13	37660163	37660363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165775.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	43.61	52.32	37.65	28.96	30.68	68.05	27.57	33.06	45.63	40.17	34.17	15.66
Merged-chr13-21750590-3	chr13	21750466	21750666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178211)	promoter-TSS (NM_178211)	-13.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	22.61	17.36	31.38	18.5	18.41	19.76	14.62	18.25	25.57	32.64	32.66	15.98
Merged-chr13-52572681-3	chr13	52572588	52572788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	537.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	122.35	99.35	156.88	126.69	138.69	157.41	119.91	143.72	123.72	141.59	174.86	96.17
Merged-chr15-100600113-3	chr15	100600019	100600219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-135.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	27.46	19.87	26.81	8.85	29.05	26.03	10.63	17.55	44.84	41.67	31.66	21.62
Merged-chr3-60080784-3	chr3	60080667	60080867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1102.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	46.44	61.12	41.07	75.21	63.82	63.03	47.5	59.08	65.69	82.35	50.25	34.46
Merged-chr18-39490896-3	chr18	39490795	39490995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3650.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	123.16	89.29	131.21	120.66	83.87	121.98	96.0	99.65	129.81	93.89	125.12	85.52
Merged-chr3-116007442-3	chr3	116007347	116007547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-2.0	NM_021388	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	77.53	72.69	52.48	49.87	74.46	101.28	46.5	53.1	92.44	128.04	112.56	37.28
Merged-chr9-37094310-1	chr9	37094210	37094410	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	53012.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	7.27	9.06	5.7	4.02	19.23	14.42	14.95	16.12	1.18	2.01	0.0	0.63
Merged-chr11-115824005-3	chr11	115823898	115824098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145438)	promoter-TSS (NM_145438)	-60.0	NM_145438	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	43.21	21.88	30.8	28.15	57.68	45.47	19.93	38.78	48.19	34.14	48.74	28.82
Merged-chr17-6106460-3	chr17	6106367	6106567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	-363.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	83.59	56.09	51.34	53.49	64.64	112.89	56.47	83.86	94.8	84.35	104.01	48.56
Merged-chr18-32163452-1	chr18	32163352	32163552	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011946, exon 1 of 17)	5' UTR (NM_011946, exon 1 of 17)	363.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	31.9	45.53	22.82	27.75	46.64	32.3	38.86	31.77	44.45	37.16	33.67	28.19
Merged-chr17-6783192-3	chr17	6783101	6783301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-421.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	27.86	24.9	29.66	17.7	33.55	25.09	34.88	27.5	18.88	17.57	18.59	15.66
Merged-chr7-126746303-3	chr7	126746200	126746400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-13326.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	33.11	33.7	44.5	36.6	87.14	78.39	44.84	61.09	71.99	90.88	109.04	57.01
Merged-chr12-34789242-3	chr12	34789140	34789340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	MLT1F|LTR|ERVL-MaLR	127855.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	16.56	18.61	26.81	42.23	31.09	25.09	28.23	48.98	48.98	47.7	58.79	31.64
Merged-chr7-141467801-3	chr7	141467695	141467895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-24.0	NR_152219	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	31.9	24.65	29.66	19.31	54.82	54.25	22.59	35.44	47.4	34.65	40.2	22.87
Merged-chr12-40445916-3	chr12	40445818	40446018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172575)	promoter-TSS (NM_172575)	-128.0	NM_178845	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	271.35	278.19	275.53	313.72	253.64	318.59	240.16	326.3	325.32	313.82	431.13	223.36
Merged-chr13-112748251-3	chr13	112748141	112748341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52536.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	45.63	26.66	21.11	50.27	60.55	48.6	55.47	51.84	69.04	54.23	86.93	34.46
Merged-chr7-28392828-3	chr7	28392716	28392916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026042)	promoter-TSS (NM_026042)	-126.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	189.78	193.43	203.08	221.21	224.19	261.83	180.37	176.33	260.42	283.69	291.44	152.25
Merged-chr4-48108807-3	chr4	48108718	48108918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16101.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	40.78	26.66	23.96	33.78	26.59	31.67	18.6	56.22	36.78	35.65	28.64	24.12
Merged-chr3-65528973-1	chr3	65528873	65529073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_027955, exon 2 of 2)	non-coding (NR_027955, exon 2 of 2)	441.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	46.84	31.69	43.35	41.83	28.23	56.13	28.23	24.79	80.05	45.69	80.9	43.54
Merged-chr9-78448255-3	chr9	78448173	78448373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026658)	promoter-TSS (NM_026658)	63.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	66.22	70.43	72.45	54.7	69.55	83.41	45.18	71.16	72.77	60.75	50.25	34.77
Merged-chr18-42262241-3	chr18	42262140	42262340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-169.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	235.41	232.41	240.73	229.25	266.33	270.61	205.61	274.68	325.72	268.12	322.59	171.98
Merged-chr17-70968926-4	chr17	70968873	70969073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21543.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	23.02	27.17	11.41	19.31	21.68	29.16	5.98	13.93	31.86	14.56	25.63	22.56
Merged-chr5-3647998-3	chr5	3647886	3648086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026033)	promoter-TSS (NM_026033)	-50.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	92.07	95.58	95.27	85.27	98.18	96.58	107.62	108.08	126.27	110.97	146.72	61.09
Merged-chr18-50128262-3	chr18	50128140	50128340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008292)	promoter-TSS (NM_008292)	39.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	34.32	20.88	17.11	31.37	33.14	30.42	21.26	34.46	35.01	26.61	43.72	39.16
Merged-chr8-85492459-3	chr8	85492319	85492519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-198.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	40.38	35.72	34.8	43.04	33.55	49.23	37.54	48.53	31.67	46.19	51.76	31.01
Merged-chr8-117282328-3	chr8	117282237	117282437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25318.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	49.67	35.97	58.19	50.68	40.09	55.5	60.12	63.2	51.34	26.61	43.21	39.47
Merged-chr15-58325552-3	chr15	58325449	58325649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	15.75	17.1	8.56	14.48	28.64	27.59	10.63	21.28	40.12	26.11	42.71	24.12
Merged-chr5-117872343-3	chr5	117872258	117872458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5519.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	27.46	35.21	39.93	22.52	55.23	72.44	45.18	43.93	87.53	92.39	94.47	34.77
Merged-chr3-89177360-3	chr3	89177239	89177439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309909)	promoter-TSS (NM_001309909)	-52.0	NM_001309910	24045.0	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	96.1	99.86	110.67	106.58	112.09	108.81	98.99	95.52	107.59	113.48	98.99	57.64
Merged-chr13-47228436-3	chr13	47228361	47228561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	34458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	75.51	61.12	112.95	86.47	76.5	88.74	50.82	86.97	79.86	92.89	132.15	80.82
Merged-chr14-20803712-3	chr14	20803592	20803792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9453.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	29.48	34.71	35.37	38.21	16.36	24.15	10.96	23.05	32.26	49.21	48.24	37.28
Merged-chr12-84222825-3	chr12	84222741	84222941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3960.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	36.34	14.34	28.52	19.31	34.77	21.64	12.29	32.44	36.58	22.59	36.18	18.8
Merged-chr9-90043082-3	chr9	90042974	90043174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-11193.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	56.94	72.19	63.89	58.72	73.23	92.82	53.48	69.06	127.65	145.11	199.99	79.88
Merged-chr10-117435598-3	chr10	117435479	117435679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11856.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	56.94	60.87	67.31	56.71	55.64	69.93	34.88	54.62	79.46	68.29	85.92	48.56
Merged-chr12-116460588-3	chr12	116460497	116460697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133762, exon 29 of 29)	exon (NM_133762, exon 29 of 29)	-25123.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	39.57	38.23	48.49	39.82	33.96	38.57	34.21	72.9	71.99	87.37	86.93	46.05
Merged-chr5-136199090-3	chr5	136199006	136199206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-152.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	123.56	116.46	148.89	136.75	127.64	171.21	92.01	139.94	169.55	217.91	165.82	114.66
Merged-chr13-55479223-3	chr13	55479117	55479317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177371, intron 8 of 14)	intron (NM_001177371, intron 8 of 14)	-1441.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	63.8	62.38	69.6	63.15	70.37	130.76	67.1	60.79	107.0	95.4	128.64	49.81
Merged-chr5-113017211-3	chr5	113017113	113017313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1675.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	40.38	30.69	26.24	18.5	30.27	22.26	15.28	19.63	38.94	53.22	39.7	20.68
Merged-chr17-31855975-3	chr17	31855886	31856086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-182.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	142.14	150.92	136.34	119.05	141.14	196.3	70.42	104.3	137.29	154.65	135.67	90.22
Merged-chr10-21889567-3	chr10	21889477	21889677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	7393.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	75.91	85.27	68.45	89.29	57.27	116.65	63.11	75.0	65.5	89.88	84.92	49.81
Merged-chr13-52583265-6	chr13	52583182	52583382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	-155.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	41.19	48.04	50.77	51.88	28.64	58.32	34.55	37.91	50.94	30.13	55.27	37.91
Merged-chr4-129496799-3	chr4	129496708	129496908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5618.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	100.55	69.42	38.22	54.7	70.77	106.93	63.44	35.89	129.22	91.38	98.49	53.57
Merged-chrM-3670-1	chrM	3570	3770	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											41546.94	39510.26	48538.44	49557.04	38136.22	45917.41	44888.58	58421.28	0.0	0.0	0.0	0.0
Merged-chr1-135147533-3	chr1	135147430	135147630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026823, intron 1 of 6)	CpG	696.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	88.03	114.95	91.27	113.82	112.09	156.16	92.68	136.63	149.88	121.01	166.82	91.79
Merged-chr7-6283754-3	chr7	6283654	6283854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2826.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	29.88	41.5	30.23	44.64	33.96	49.86	41.52	39.93	63.73	45.69	57.79	26.94
Merged-chr6-129402633-3	chr6	129402537	129402737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019985, intron 4 of 5)	intron (NM_019985, intron 4 of 5)	5340.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	19.79	17.1	27.38	24.13	18.82	17.25	18.6	43.65	40.52	30.13	54.27	27.57
Merged-chr8-75033829-5	chr8	75033735	75033935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136259, intron 1 of 15)	CpG	149.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	69.86	102.12	85.0	92.51	88.78	98.78	102.97	44.5	99.92	151.13	114.57	73.93
Merged-chr7-35172006-3	chr7	35171909	35172109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14376.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	44.01	26.16	29.09	19.71	29.86	37.32	31.89	29.75	32.45	34.14	35.68	23.81
Merged-chr11-109361976-3	chr11	109361904	109362104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-790.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	51.28	57.85	58.76	24.94	31.09	77.77	31.89	30.87	57.04	50.71	47.74	16.29
Merged-chr5-3343858-3	chr5	3343805	3344005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	12.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	26.25	18.61	13.12	25.74	32.32	34.49	22.26	21.73	34.42	28.12	41.2	26.31
Merged-chr18-79181546-1	chr18	79181446	79181646	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-72155.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	2.83	1.01	5.7	10.46	24.96	34.81	56.14	43.54	5.31	6.03	13.06	2.82
Merged-chr11-6444634-3	chr11	6444540	6444740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347064)	promoter-TSS (NM_001347064)	-197.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	195.84	190.16	259.56	197.48	220.1	301.66	183.36	229.09	290.31	289.21	267.82	154.44
Merged-chr16-18426495-3	chr16	18426385	18426585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	68.0	NM_013711	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	24.23	16.6	22.25	16.09	26.18	28.54	31.56	39.93	28.72	36.65	39.7	24.75
Merged-chr17-86114404-3	chr17	86114317	86114517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 10 of 20)	Lx8|LINE|L1	30758.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	31.9	23.64	43.35	31.77	24.96	43.9	32.55	60.03	50.75	39.67	75.37	33.52
Merged-chr7-3645107-3	chr7	3644997	3645197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-172.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	271.35	258.57	339.99	293.61	315.42	358.1	284.34	314.16	365.64	367.54	430.13	265.34
Merged-chr13-111980461-3	chr13	111980369	111980569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112533.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	65.41	52.82	75.3	70.79	131.73	122.29	120.58	136.68	59.01	49.71	82.41	40.72
Merged-chr9-50739423-3	chr9	50739317	50739517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025865)	TTS (NM_025865)	-1682.0	NM_001311069	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	50.88	36.22	47.92	63.55	47.46	84.98	45.18	57.59	63.73	88.87	89.44	30.39
Merged-chr17-27976510-1	chr17	27976410	27976610	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	67204.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	2.83	3.52	3.42	5.63	13.91	18.19	12.95	11.41	0.98	1.0	1.0	1.57
Merged-chr13-23543485-3	chr13	23543333	23543533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	11.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	60.97	57.35	70.17	84.46	65.87	59.89	46.5	64.96	84.58	71.8	109.04	52.94
Merged-chr4-120825782-3	chr4	120825681	120825881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277095)	promoter-TSS (NM_001277095)	-40.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	139.31	109.92	108.96	126.29	109.23	121.35	65.11	72.39	139.45	147.12	168.33	95.86
Merged-chr5-114639560-3	chr5	114639465	114639665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022017, intron 3 of 15)	intron (NM_022017, intron 3 of 15)	18856.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	20.59	18.61	14.26	17.7	21.68	36.06	19.27	23.86	27.34	28.12	26.13	13.16
Merged-chr19-42005787-3	chr19	42005681	42005881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	L3|LINE|CR1	24018.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	88.84	47.54	87.28	71.99	54.82	80.9	59.13	67.68	44.84	53.73	70.35	35.71
Merged-chr3-27682741-1	chr3	27682641	27682841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001356953, exon 2 of 27)	5' UTR (NM_001356953, exon 2 of 27)	27711.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	17.36	23.14	20.54	18.9	4.09	1.57	0.66	0.03	0.98	0.0	0.0	0.0
Merged-chr2-160622101-3	chr2	160621993	160622193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23804.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	44.82	15.34	47.92	62.74	30.27	29.79	52.48	67.77	40.12	40.17	38.19	21.62
Merged-chr19-32224900-3	chr19	32224788	32224988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13875.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	24.63	21.63	35.37	28.15	56.46	74.0	36.87	46.51	43.86	41.17	62.81	21.93
Merged-chr2-30965789-3	chr2	30965688	30965888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	2130.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	23.02	36.97	27.95	39.42	51.55	53.31	27.9	33.11	60.97	41.67	69.34	29.45
Merged-chr8-26119306-3	chr8	26119214	26119414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207659)	promoter-TSS (NM_207659)	-54.0	NM_001357292	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	155.46	163.49	182.55	119.45	140.32	220.76	120.58	130.18	176.04	222.43	229.63	80.2
Merged-chr2-165317062-3	chr2	165316982	165317182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	-731.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	68.65	45.78	55.33	66.36	68.73	82.78	41.85	69.42	83.4	75.32	101.5	76.44
Merged-chr16-24936048-3	chr16	24935938	24936138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-123601.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	35.94	18.11	29.09	30.57	33.55	34.49	18.93	44.69	31.67	22.59	42.21	29.13
Merged-chr10-18943554-3	chr10	18943457	18943657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	68406.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	16.56	16.35	39.93	35.39	15.96	24.15	54.81	56.72	26.55	28.62	71.35	41.98
Merged-chr10-13500703-3	chr10	13500631	13500831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-297.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	10.9	14.84	21.68	18.1	16.77	15.05	13.29	17.83	17.31	19.58	30.65	9.08
Merged-chr5-24842043-2	chr5	24841937	24842137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053075, intron 1 of 7)	CpG	324.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	18.98	20.12	26.81	9.65	13.91	16.62	21.26	13.49	24.19	30.13	22.11	19.74
Merged-chr7-84679457-3	chr7	84679373	84679573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-77.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	34.73	34.96	58.19	67.97	51.96	43.27	37.2	69.45	68.84	44.19	76.38	32.27
Merged-chr2-27758563-3	chr2	27758472	27758672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	47989.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	33.92	25.66	38.22	51.48	46.64	26.34	43.85	79.18	41.7	35.65	55.78	26.94
Merged-chr12-69985760-3	chr12	69985670	69985870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	1232.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	16.15	17.86	21.68	20.51	30.68	77.45	14.62	21.31	46.03	57.24	35.68	24.12
Merged-chr15-59829935-3	chr15	59829857	59830057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34998.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	32.71	23.9	53.62	40.62	38.05	35.12	36.87	61.46	47.99	35.15	46.73	32.58
Merged-chr9-119088413-4	chr9	119088335	119088535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-174.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	40.78	55.59	37.65	59.12	47.46	60.52	55.8	40.71	70.61	67.78	87.93	67.67
Merged-chr1-162224971-3	chr1	162224857	162225057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002870, exon 1 of 1)	non-coding (NR_002870, exon 1 of 1)	1589.0	NR_029796	387210.0		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	33.52	28.93	11.98	30.57	73.64	100.34	46.84	55.57	36.98	35.65	34.67	20.05
Merged-chr11-3535489-3	chr11	3535377	3535577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159284, intron 3 of 21)	intron (NM_001159284, intron 3 of 21)	3815.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	61.38	45.78	39.93	52.29	72.82	69.93	42.19	82.04	68.45	52.72	115.07	57.01
Merged-chr15-84988112-3	chr15	84988056	84988256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-185.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	118.31	125.76	91.27	85.27	108.0	127.62	80.39	91.91	150.47	125.53	156.27	106.82
Merged-chr19-37147351-3	chr19	37147251	37147451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 2 of 10)	PB1D9|SINE|Alu	-26492.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	69.86	57.85	91.27	67.17	79.78	62.71	62.12	87.45	58.42	35.65	96.48	33.83
Merged-chr18-35748487-3	chr18	35748410	35748610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-7956.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	27.05	24.65	38.22	21.72	39.27	37.32	25.58	33.11	32.06	39.16	23.11	29.76
Merged-chr9-43106019-3	chr9	43105908	43106108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-290.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	46.03	42.76	47.35	24.53	40.09	39.2	29.9	28.57	49.57	67.28	40.7	35.71
Merged-chr10-111782528-1	chr10	111782428	111782628	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	91848.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	3.63	1.01	0.57	6.03	4.5	3.76	3.65	3.48	3.54	2.51	3.52	0.94
Merged-chr15-6390847-3	chr15	6390719	6390919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4071.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	28.27	8.05	36.51	34.59	40.91	19.44	34.88	41.16	16.92	20.59	23.62	16.6
Merged-chrX-85776808-3	chrX	85776693	85776893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294138)	promoter-TSS (NM_001294138)	26.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	127.2	153.94	133.49	199.09	166.51	183.75	217.24	192.65	190.79	199.84	261.29	119.04
Merged-chr2-80267112-3	chr2	80267012	80267212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25358.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	41.19	39.74	44.5	69.18	33.96	47.04	28.57	65.27	54.88	71.3	70.85	40.41
Merged-chr18-73703848-3	chr18	73703756	73703956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	-70.0	NR_155448	105246496.0	Mm.109270	NR_155448		4930578L24Rik	-	RIKEN cDNA 4930578L24 gene	ncRNA	74.7	68.67	77.58	67.17	91.64	91.56	53.81	84.06	127.06	123.02	136.68	82.39
Merged-chr10-79916954-3	chr10	79916841	79917041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177994)	promoter-TSS (NM_177994)	-11.0	NM_177994	109284.0	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	28.27	15.34	29.09	20.11	33.14	33.87	18.27	20.55	40.52	32.64	51.25	20.68
Merged-chr11-51289997-1	chr11	51289897	51290097	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	77.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	12.52	8.3	3.42	15.28	15.55	11.29	16.94	17.61	5.7	11.05	5.53	6.27
Merged-chr16-4964364-3	chr16	4964269	4964469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	81.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	252.37	214.55	249.86	279.13	275.33	334.27	266.07	290.44	246.65	305.78	429.62	182.01
Merged-chrX-10871790-3	chrX	10871698	10871898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154433.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	48.46	33.2	26.81	42.23	38.05	47.98	28.23	42.42	57.04	61.26	63.31	36.03
Merged-chr6-122339789-5	chr6	122339728	122339928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-171.0	NR_073364	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	8.48	18.11	18.83	10.46	16.77	28.54	16.61	13.68	28.32	23.1	26.63	16.29
Merged-chr16-16573357-3	chr16	16573255	16573455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-13136.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	16.56	21.88	37.08	38.61	25.77	29.16	16.94	29.55	37.37	22.59	49.24	27.25
Merged-chr11-53301068-1	chr11	53300968	53301168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-589.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	16.96	19.62	21.68	14.08	14.73	23.52	15.28	15.22	20.06	37.16	23.11	22.24
Merged-chr8-108743371-3	chr8	108743264	108743464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28720.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	23.42	32.2	27.38	17.29	36.82	29.16	33.55	46.79	34.22	25.11	33.16	33.52
Merged-chr2-52930261-3	chr2	52930245	52930445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	72477.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	11.71	11.82	10.27	9.65	14.32	15.99	18.93	7.18	14.55	17.57	14.07	15.04
Merged-chr7-59228654-3	chr7	59228557	59228757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-93.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	174.44	181.85	218.48	183.81	243.01	248.98	212.26	264.95	232.68	244.02	370.33	152.25
Merged-chr8-41043736-3	chr8	41043636	41043836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-1805.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	17.77	9.81	7.42	11.26	20.05	27.59	9.3	21.03	22.03	23.6	20.6	15.04
Merged-chr11-26640662-3	chr11	26640551	26640751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46731.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	139.71	179.34	182.55	152.03	119.46	158.35	128.22	116.05	159.91	167.2	171.85	60.77
Merged-chr3-95668987-5	chr3	95668821	95669021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10200.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	29.07	20.12	10.27	10.86	24.96	33.87	15.28	24.64	30.09	31.63	27.13	19.42
Merged-chr7-27446820-3	chr7	27446699	27446899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032610)	promoter-TSS (NM_032610)	-210.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	51.69	44.02	62.18	28.15	53.18	42.02	44.18	53.36	47.99	47.7	72.86	24.12
Merged-chr1-91046442-3	chr1	91046337	91046537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7007.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	103.37	67.66	95.27	95.32	94.91	106.3	63.11	78.03	69.82	77.32	84.42	52.32
Merged-chrX-142537760-3	chrX	142537659	142537859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142588.0	NM_001358725	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	52.49	48.04	52.48	57.11	46.23	49.86	57.13	62.5	49.76	57.24	72.86	34.46
Merged-chr10-98609634-3	chr10	98609554	98609754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-257787.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	19.38	21.63	24.53	18.1	30.68	36.37	12.62	15.9	39.73	38.66	26.13	14.1
Merged-chr8-120369123-3	chr8	120369027	120369227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119739.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	21.8	17.61	25.1	28.15	18.41	34.81	22.26	26.97	32.45	35.15	32.16	20.99
Merged-chr5-33629777-3	chr5	33629701	33629901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-166.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	172.42	169.53	145.47	134.74	182.87	219.19	138.85	167.22	235.83	262.6	242.7	117.47
Merged-chr5-113773932-3	chr5	113773854	113774054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	1142.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	79.55	104.38	77.01	75.21	91.23	123.23	93.34	71.24	108.97	136.07	109.04	77.69
Merged-chr7-80092638-3	chr7	80092534	80092734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-17377.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	34.73	23.9	46.21	28.56	52.37	42.65	40.19	49.57	31.27	33.64	42.71	34.46
Merged-chr3-89103172-3	chr3	89103020	89103220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1153.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	44.82	21.88	24.53	28.56	18.41	19.13	16.28	28.46	21.83	16.07	21.1	17.23
Merged-chr9-45906935-3	chr9	45906834	45907034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310839)	promoter-TSS (NM_001310839)	-23.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	39.98	41.5	34.23	27.35	35.18	61.46	24.58	27.31	42.29	61.26	58.29	23.81
Merged-chrUn_JH584304-30954-1	chrUn_JH584304	30854	31054	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28735.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.8	19.58	18.59	11.28
Merged-chr19-55236213-3	chr19	55236117	55236317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5019.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	19.38	14.59	19.4	24.13	40.91	25.09	59.46	65.36	28.32	22.59	52.26	28.82
Merged-chr18-84951613-3	chr18	84951509	84951709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-85.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	159.5	149.41	156.88	173.35	196.37	220.44	149.81	229.09	268.87	225.45	271.84	122.8
Merged-chr17-47754353-3	chr17	47754272	47754472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	16441.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	97.72	79.73	80.43	85.27	113.73	123.23	87.36	104.1	145.75	117.99	120.09	62.03
Merged-chr4-42968869-1	chr4	42968769	42968969	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1077.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.63	4.02	1.14	3.22	2.45	3.14	2.66	1.4	38.75	46.7	45.22	31.64
Merged-chr9-108340563-3	chr9	108340473	108340673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001329528)	TTS (NM_001329528)	1493.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	79.14	53.32	85.0	65.96	67.5	81.84	75.73	94.99	95.79	82.35	144.71	67.04
Merged-chr14-76414572-3	chr14	76414446	76414646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310646)	promoter-TSS (NM_001310646)	-415.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	87.22	93.32	85.0	110.6	101.05	104.42	92.01	78.9	105.23	97.91	133.66	65.79
Merged-chr1-91459458-3	chr1	91459348	91459548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-120.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	227.74	222.35	235.03	200.7	274.51	311.38	188.34	213.95	243.11	294.23	299.98	183.89
Merged-chr16-38198402-3	chr16	38198303	38198503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 7 of 11)	MTC|LTR|ERVL-MaLR	96421.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	25.44	31.94	19.97	24.13	15.14	30.1	16.94	25.21	34.81	47.7	26.63	7.83
Merged-chr2-31170468-3	chr2	31170356	31170556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178760, intron 4 of 17)	intron (NM_178760, intron 4 of 17)	18140.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	32.3	22.39	39.36	34.99	22.91	34.49	18.6	33.53	30.88	10.04	35.17	24.43
Merged-chr4-94556760-3	chr4	94556631	94556831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	65.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	91.26	77.72	84.43	71.99	80.18	94.39	73.08	91.93	90.87	81.34	84.92	54.82
Merged-chr19-47330890-3	chr19	47330797	47330997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 6 of 14)	intron (NM_008018, intron 6 of 14)	-57308.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	48.46	43.26	38.22	35.39	38.46	59.58	27.57	22.07	47.99	53.73	51.25	23.81
Merged-chr6-87255860-3	chr6	87255764	87255964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_054041, exon 10 of 18)	exon (NM_054041, exon 10 of 18)	79911.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	34.32	36.72	34.23	41.02	22.5	33.87	21.26	28.88	43.66	29.12	47.23	26.94
Merged-chr18-60716904-3	chr18	60716794	60716994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	10672.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	31.5	22.64	38.22	47.86	54.41	35.75	45.18	61.26	44.25	25.11	57.79	44.8
Merged-chr7-139213286-3	chr7	139213170	139213370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-5.0	NM_001143755	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	120.73	82.75	105.53	110.2	129.28	139.85	53.48	105.95	191.57	221.43	222.1	119.98
Merged-chr14-72558123-1	chr14	72558023	72558223	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 19 of 25)	intron (NM_207636, intron 19 of 25)	151880.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.81	2.26	3.42	5.63	2.45	5.96	11.63	10.37	11.01	4.02	7.54	3.45
Merged-chr10-60346826-3	chr10	60346744	60346944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-7.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	87.62	72.44	110.1	86.47	76.5	88.74	68.76	69.03	69.43	89.88	78.39	74.87
Merged-chr1-93825397-3	chr1	93825305	93825505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310767, exon 1 of 10)	5' UTR (NM_001310767, exon 1 of 10)	165.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	62.59	70.18	78.15	85.67	71.18	90.94	148.81	94.74	71.2	91.89	88.44	77.69
Merged-chr9-123461995-3	chr9	123461909	123462109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001348167, exon 21 of 21)	3' UTR (NM_001348167, exon 21 of 21)	-16692.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	430.45	575.24	435.26	498.33	130.5	150.2	161.77	20.66	113.49	108.45	118.08	224.93
Merged-chr14-50820256-1	chr14	50820156	50820356	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009632, intron 13 of 15)	intron (NM_009632, intron 13 of 15)	12340.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.0	0.5	0.0	4.83	4.09	1.57	0.0	0.93	26.16	18.58	34.17	26.0
Merged-chr12-112864995-3	chr12	112864886	112865086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4070.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	86.82	107.91	83.86	63.55	104.73	128.25	58.13	66.53	97.75	95.9	124.62	40.1
Merged-chr16-55812779-2	chr16	55812703	55812903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	9335.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	13.33	8.05	2.28	1.61	5.32	11.92	2.66	1.88	15.34	13.05	2.01	1.25
Merged-chr12-69448081-3	chr12	69447975	69448175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27475.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	90.85	65.4	99.26	80.04	65.46	97.21	92.01	132.84	94.61	108.96	93.96	47.62
Merged-chr2-61585611-3	chr2	61585515	61585715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	7029.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	50.47	61.37	80.43	62.74	52.77	74.94	60.79	49.63	116.44	113.98	126.63	76.12
Merged-chr1-161969160-3	chr1	161969060	161969260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204905)	promoter-TSS (NM_001204905)	-12.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	58.15	55.84	64.46	55.1	76.5	90.0	58.46	68.8	83.4	78.83	141.7	64.85
Merged-chr14-30577853-1	chr14	30577753	30577953	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5704.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.0	0.25	1.14	2.82	0.0	1.88	0.0	0.76	98.93	87.37	139.69	66.1
Merged-chr3-54735464-3	chr3	54735345	54735545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	-81.0	NM_001163570	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	88.84	112.43	122.65	129.51	122.32	131.7	61.12	98.58	152.43	189.8	200.99	93.67
Merged-chr1-119526279-3	chr1	119526188	119526388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146103, exon 1 of 1)	5' UTR (NM_146103, exon 1 of 1)	134.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	47.65	73.19	77.58	104.57	78.55	89.37	149.81	85.12	58.42	99.92	93.46	64.85
Merged-chr15-88863202-4	chr15	88863102	88863302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145478, exon 4 of 6)	exon (NM_145478, exon 4 of 6)	1008.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	19.79	15.09	13.69	5.63	20.46	27.28	20.93	20.07	30.09	30.13	19.09	24.43
Merged-chr1-180936933-2	chr1	180936821	180937021	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010094, intron 2 of 3)	intron (NM_010094, intron 2 of 3)	1899.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.0	0.0	0.0	0.8	26.59	23.52	18.6	20.58	26.36	17.57	30.15	17.23
Merged-chr19-44069796-3	chr19	44069670	44069870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164359)	promoter-TSS (NM_001164359)	5.0	NM_001164359	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	35.53	22.64	18.25	30.57	24.55	36.37	18.27	24.79	26.75	28.62	37.69	29.45
Merged-chr14-102980663-3	chr14	102980545	102980745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	1987.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	22.21	18.36	42.21	32.18	19.64	16.93	22.59	34.09	39.34	17.57	50.25	15.98
Merged-chr1-89555572-3	chr1	89555469	89555669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	100758.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	60.97	63.13	39.93	35.8	78.96	112.26	62.45	57.62	93.03	122.01	105.02	43.54
Merged-chr15-34046549-3	chr15	34046436	34046636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36183.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	173.23	207.01	153.45	194.66	194.32	212.92	188.67	184.8	215.96	196.32	250.24	114.34
Merged-chr3-93552557-3	chr3	93552469	93552669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2548.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	26.65	34.46	39.93	43.04	21.68	21.32	38.53	35.66	27.14	15.57	24.12	23.81
Merged-chr19-6408948-3	chr19	6408863	6409063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 12 of 16)	intron (NM_011242, intron 12 of 16)	8380.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	80.36	39.99	60.47	58.32	60.55	39.51	52.82	60.9	61.96	39.67	81.4	31.64
Merged-chr3-40949693-3	chr3	40949578	40949778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040399)	promoter-TSS (NM_001040399)	-953.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	217.65	205.5	227.04	207.54	286.37	283.78	259.76	285.81	313.32	295.24	452.23	174.8
Merged-chr17-51178743-3	chr17	51178634	51178834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 1 of 21)	CpG	618.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	50.88	42.51	65.03	45.05	60.96	67.73	65.11	77.33	81.04	90.88	123.61	42.6
Merged-chr15-103239504-3	chr15	103239413	103239613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	339.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	100.14	116.96	102.68	99.34	94.09	126.68	63.44	123.73	132.17	150.63	179.89	79.88
Merged-chr10-98776465-3	chr10	98776369	98776569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138173.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	68.24	58.1	58.19	56.71	94.5	73.38	45.18	62.33	95.2	85.86	82.91	52.63
Merged-chr14-121929533-3	chr14	121929447	121929647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13773.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	81.16	59.36	83.86	63.15	60.14	62.4	61.45	69.9	56.45	44.19	65.32	31.64
Merged-chr19-5929747-3	chr19	5929627	5929827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4911.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	44.01	51.06	67.88	48.67	63.0	78.08	52.82	49.43	106.41	71.3	81.4	40.1
Merged-chr13-101760466-3	chr13	101760366	101760566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	7751.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	47.24	29.68	26.24	42.23	29.46	28.54	18.6	26.24	29.5	23.6	21.61	16.6
Merged-chr5-23783652-3	chr5	23783558	23783758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289780)	promoter-TSS (NM_001289780)	53.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	44.82	54.83	74.73	57.92	69.55	62.4	42.52	73.6	69.43	51.21	103.51	40.72
Merged-chr16-4863105-3	chr16	4863008	4863208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030192, exon 12 of 16)	exon (NM_030192, exon 12 of 16)	16743.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	21.8	27.17	27.95	29.36	26.18	44.53	25.58	39.7	37.17	41.17	75.87	17.23
Merged-chr11-98148942-3	chr11	98148850	98149050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	666.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	23.02	22.13	25.1	15.28	45.41	36.06	26.24	28.63	37.17	27.62	43.72	31.33
Merged-chrX-8176030-3	chrX	8175908	8176108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172478, exon 1 of 6)	5' UTR (NM_172478, exon 1 of 6)	173.0	NM_001166437	209815.0	Mm.122963	NM_172478	ENSMUSG00000039201	Tbc1d25	6330576A08Rik|DXHXS7927e|Oatl1	TBC1 domain family, member 25	protein-coding	21.4	18.61	15.4	24.13	17.18	24.77	8.97	22.01	28.13	34.65	31.15	13.47
Merged-chr4-132308634-3	chr4	132308528	132308728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029468)	promoter-TSS (NR_029468)	-50.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	30.69	33.45	31.95	30.97	36.82	32.61	25.58	22.09	44.45	56.74	36.68	26.31
Merged-chr16-49905668-1	chr16	49905568	49905768	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	50014.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	19.38	4.28	18.83	11.26	17.59	34.81	23.58	25.04	30.09	23.1	36.68	17.54
Merged-chr6-5298327-3	chr6	5298218	5298418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	55.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	58.15	74.7	68.45	81.24	78.14	67.1	52.15	69.28	59.79	61.26	85.92	37.59
Merged-chr10-59616699-3	chr10	59616608	59616808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-16.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	65.82	57.1	59.33	96.93	80.59	83.72	64.44	69.39	82.41	71.8	108.54	55.13
Merged-chr1-178369468-3	chr1	178369374	178369574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31659.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	35.53	34.96	36.51	24.94	21.27	33.87	17.94	33.5	40.32	26.11	44.72	21.93
Merged-chr11-102248820-3	chr11	102248720	102248920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-62.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	44.42	24.9	25.67	23.33	24.96	36.69	18.27	16.29	51.73	42.18	32.66	17.23
Merged-chr17-17587576-3	chr17	17587501	17587701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36888.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	62.99	64.39	96.41	81.65	41.32	79.65	40.86	99.0	66.68	77.83	79.39	42.6
Merged-chr3-122573643-3	chr3	122573534	122573734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31953.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	35.53	36.72	28.52	41.02	28.64	46.1	31.22	31.96	66.87	52.72	67.33	44.48
Merged-chr13-67081415-3	chr13	67081335	67081535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	110.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	52.9	65.65	68.45	101.76	61.77	88.43	104.3	102.81	88.9	98.41	136.68	96.8
Merged-chr12-85366600-3	chr12	85366501	85366701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8116.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	82.37	64.39	103.25	61.94	100.23	120.73	94.34	85.21	86.94	53.73	128.13	52.94
Merged-chr9-53667080-3	chr9	53666959	53667159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027807, exon 1 of 19)	exon (NM_027807, exon 1 of 19)	448.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	25.84	23.39	14.83	18.5	25.77	32.61	22.92	24.31	50.55	55.23	42.71	25.37
Merged-chr15-27630758-3	chr15	27630660	27630860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013792)	promoter-TSS (NM_001013792)	-67.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	185.34	174.06	159.73	159.27	163.23	199.43	137.52	158.86	229.14	229.96	228.63	133.45
Merged-chr5-105507918-2	chr5	105507822	105508022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11549.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	33.52	15.34	62.18	43.44	37.23	26.03	22.59	36.84	0.79	1.51	13.57	4.39
Merged-chr11-106084312-3	chr11	106084211	106084411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-591.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	307.69	329.25	357.11	344.28	334.65	410.78	315.56	338.52	376.46	464.95	544.19	246.85
Merged-chr1-165736255-3	chr1	165736144	165736344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27514.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	41.99	23.39	47.35	76.42	48.27	40.76	60.79	62.5	52.52	49.21	65.83	30.7
Merged-chr2-101629034-3	chr2	101628932	101629132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-46.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	88.03	97.09	118.08	76.42	154.23	137.03	130.21	183.73	157.15	143.6	225.61	83.96
Merged-chr3-103058318-3	chr3	103058197	103058397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010937)	promoter-TSS (NM_010937)	12.0	NM_010937	18176.0	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	38.36	32.45	66.74	46.66	45.0	36.06	28.9	41.38	81.04	54.73	61.81	58.27
Merged-chr2-66256655-3	chr2	66256547	66256747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-30.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	67.84	61.12	65.03	96.93	97.78	80.59	114.93	126.11	102.67	93.39	143.21	65.47
Merged-chr16-15863406-3	chr16	15863318	15863518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029354)	promoter-TSS (NM_029354)	-49.0	NM_001359003	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	77.93	65.15	65.6	76.82	71.59	93.13	39.86	66.06	119.78	93.39	125.12	56.7
Merged-chr5-135715784-1	chr5	135715684	135715884	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	20105.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.81	1.76	3.42	1.21	19.64	21.01	19.27	16.21	0.79	1.51	1.51	9.4
Merged-chrX-52053703-1	chrX	52053603	52053803	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008150, exon 9 of 9)	exon (NM_008150, exon 9 of 9)	-80931.0	NM_028851	74279.0	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	1.21	1.51	2.85	2.41	3.68	1.88	8.3	12.7	0.2	1.0	2.01	0.94
Merged-chr17-35838330-3	chr17	35838230	35838430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011655)	promoter-TSS (NM_011655)	-29.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	80.36	87.53	83.29	76.42	95.73	99.09	52.82	68.41	100.7	85.86	117.08	53.57
Merged-chr15-66816665-3	chr15	66816558	66816758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	15171.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	109.83	101.62	126.64	136.35	100.64	113.51	87.03	87.48	86.15	109.96	94.97	50.44
Merged-chr12-99390900-3	chr12	99390812	99391012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	59162.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	68.24	40.75	33.09	36.6	42.55	42.96	35.21	24.53	49.57	39.67	27.64	46.99
Merged-chrX-8168385-3	chrX	8168265	8168465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172478, intron 3 of 5)	(CA)n|Simple_repeat|Simple_repeat	7816.0	NM_001166437	209815.0	Mm.122963	NM_172478	ENSMUSG00000039201	Tbc1d25	6330576A08Rik|DXHXS7927e|Oatl1	TBC1 domain family, member 25	protein-coding	34.32	39.74	34.23	46.66	33.96	36.69	42.52	29.52	33.04	41.17	38.69	45.74
Merged-chr7-28373401-3	chr7	28373301	28373501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-739.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	59.76	74.2	90.13	76.42	67.5	114.45	60.12	58.29	106.8	114.98	98.99	57.64
Merged-chr15-86169248-3	chr15	86169146	86169346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16482.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	20.59	19.62	16.54	6.84	38.86	48.92	20.59	22.26	43.66	45.19	23.11	15.04
Merged-chr7-29859994-3	chr7	29859894	29860094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	15.0	NM_172740	233058.0	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	42.4	29.68	31.38	39.82	41.32	51.43	25.58	50.5	79.27	66.78	108.03	41.98
Merged-chr2-11589025-3	chr2	11588924	11589124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_152824, exon 8 of 12)	exon (NM_152824, exon 8 of 12)	14175.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	28.27	37.98	33.09	46.66	34.36	23.2	49.16	22.79	35.01	33.14	35.68	19.74
Merged-chr9-71485945-3	chr9	71485845	71486045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178602)	promoter-TSS (NM_178602)	38.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	25.04	17.36	23.96	24.94	26.18	22.26	15.28	16.04	35.8	36.65	52.26	24.43
Merged-chr3-21937459-3	chr3	21937354	21937554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139198.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	28.67	29.93	41.64	39.82	27.41	44.53	38.53	52.43	44.25	38.66	34.17	41.35
Merged-chr19-46343922-3	chr19	46343808	46344008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1146.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	37.55	34.21	27.38	28.56	30.27	29.79	35.87	18.5	25.96	27.11	18.09	15.35
Merged-chr18-68252988-3	chr18	68252897	68253097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	7976.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	31.5	40.24	55.9	41.43	46.64	56.76	32.88	45.84	62.94	41.67	52.76	34.46
Merged-chr17-36837092-3	chr17	36836980	36837180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-66.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	197.86	177.33	188.25	183.81	194.32	217.31	139.51	202.12	217.93	234.99	222.6	135.33
Merged-chr11-79119000-3	chr11	79118895	79119095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	27478.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	50.88	58.1	33.66	46.25	63.0	75.26	38.2	62.72	68.84	80.34	79.89	55.13
Merged-chr11-50244055-3	chr11	50243964	50244164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5532.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	27.05	27.17	22.82	43.44	33.14	54.88	32.88	40.23	45.04	27.11	57.28	28.51
Merged-chr5-66147533-3	chr5	66147435	66147635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	B3A|SINE|B2	3443.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	46.44	39.49	49.06	37.4	67.5	43.27	33.88	44.3	53.3	47.2	70.85	21.93
Merged-chr11-100626372-2	chr11	100626282	100626482	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3427.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	12.52	8.05	18.83	15.69	4.5	5.33	15.28	14.66	33.24	4.02	26.13	14.1
Merged-chr2-27232528-3	chr2	27232433	27232633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138665, intron 8 of 20)	intron (NM_138665, intron 8 of 20)	14770.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	39.57	63.64	34.8	40.62	68.73	63.03	71.75	58.93	43.27	58.24	49.24	37.28
Merged-chr16-13286670-3	chr16	13286559	13286759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	21580.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	88.43	88.03	82.72	76.42	54.41	83.72	48.5	39.9	94.02	75.32	108.03	42.29
Merged-chr3-103916676-3	chr3	103916574	103916774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	2554.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	34.73	19.37	26.81	28.56	16.36	19.76	19.6	29.07	34.22	25.61	43.21	22.87
Merged-chr16-4723013-3	chr16	4722908	4723108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-3353.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	27.46	23.64	40.5	20.51	29.86	29.79	42.85	42.28	36.19	55.23	56.78	36.34
Merged-chr5-64205866-3	chr5	64205770	64205970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-24487.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	27.86	29.93	37.08	41.43	47.87	30.1	45.51	62.41	36.39	32.64	42.21	24.43
Merged-chr3-137865764-3	chr3	137865666	137865866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316995, intron 3 of 4)	CpG-9623	1279.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	64.2	48.8	65.6	39.42	75.68	87.17	34.55	46.57	76.71	98.91	101.0	37.28
Merged-chr7-27508154-3	chr7	27508025	27508225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019412, intron 5 of 5)	CpG-12884	8801.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	75.11	51.81	59.9	77.62	76.5	78.08	51.49	64.68	95.0	107.45	99.49	49.18
Merged-chr9-50818309-3	chr9	50818221	50818421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045601, intron 12 of 13)	intron (NR_045601, intron 12 of 13)	-38603.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	39.57	29.93	38.79	17.7	20.86	37.0	13.29	17.16	34.03	28.62	49.24	13.16
Merged-chr16-30065268-3	chr16	30065164	30065364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008235)	promoter-TSS (NM_008235)	-93.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	172.02	152.43	134.63	118.65	170.19	172.15	121.57	151.51	175.45	202.85	194.96	107.45
Merged-chr14-19418823-3	chr14	19418724	19418924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	183763.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	61.78	60.62	32.52	51.08	72.82	39.2	55.14	54.76	88.51	108.45	67.33	104.32
Merged-chr6-120174464-4	chr6	120174336	120174536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-19387.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	18.17	23.39	18.25	31.37	52.37	52.68	56.47	61.51	11.21	18.58	29.65	19.74
Merged-chr15-58746350-3	chr15	58746258	58746458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77069.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	28.27	23.14	35.37	37.81	22.91	34.18	34.88	37.23	43.07	47.2	43.21	20.99
Merged-chr17-44105238-3	chr17	44105124	44105324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	584.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	34.73	35.21	8.56	6.44	16.77	29.48	11.96	13.21	28.72	36.15	8.54	10.96
Merged-chr10-67611115-3	chr10	67611018	67611218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-39159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	29.07	37.23	62.75	44.24	47.87	56.76	57.13	68.97	55.47	70.29	78.89	37.59
Merged-chr10-127481462-3	chr10	127481362	127481562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20224.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	44.82	61.88	33.66	37.4	54.0	95.64	53.81	50.13	64.91	63.27	50.25	56.07
Merged-chr14-21822952-3	chr14	21822855	21823055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8606.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	47.65	44.77	62.75	45.85	52.77	53.31	53.48	78.39	61.96	49.21	79.89	63.91
Merged-chr10-117719141-3	chr10	117719025	117719225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-8367.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	54.92	54.58	35.94	32.18	81.82	102.22	35.87	40.71	90.08	105.94	67.84	53.26
Merged-chr11-44478661-3	chr11	44478570	44478770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	-8122.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	23.42	18.86	35.37	18.5	18.0	24.15	17.61	17.92	36.19	40.17	29.14	13.47
Merged-chr1-189871659-1	chr1	189871559	189871759	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	50632.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.81	2.77	1.14	1.61	6.95	3.14	11.63	4.49	2.75	1.51	0.0	1.88
Merged-chr14-32174343-3	chr14	32174243	32174443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033988, intron 6 of 9)	intron (NM_001033988, intron 6 of 9)	8554.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	39.98	37.98	33.09	54.3	35.59	55.19	62.45	46.6	61.17	41.17	47.23	39.78
Merged-chr4-131861483-1	chr4	131861383	131861583	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025297, intron 5 of 9)	intron (NM_025297, intron 5 of 9)	-12156.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	12.92	5.28	13.12	9.65	11.86	11.29	9.3	11.8	14.55	9.04	12.56	11.28
Merged-chr1-155158651-3	chr1	155158567	155158767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-36.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	134.87	160.22	159.16	135.54	146.46	175.6	130.54	146.13	171.91	160.17	178.88	99.62
Merged-chr17-34120467-3	chr17	34120378	34120578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	-578.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	47.65	53.58	78.15	40.22	44.59	59.58	40.19	43.99	89.49	92.39	91.95	46.99
Merged-chr15-95805212-3	chr15	95805126	95805326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	14383.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	83.59	73.19	49.06	37.4	98.18	146.44	81.71	81.93	127.65	109.96	86.93	57.64
Merged-chr12-26460264-3	chr12	26460153	26460353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3801.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	82.37	89.04	119.23	65.96	96.55	132.01	45.84	98.69	99.72	110.46	126.63	70.17
Merged-chr14-34310512-3	chr14	34310424	34310624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008133)	promoter-TSS (NM_008133)	-7.0	NM_001360074	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	247.53	221.85	214.49	203.92	237.28	281.27	227.87	250.37	268.48	269.63	313.55	150.68
Merged-chr16-76337101-3	chr16	76337020	76337220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	138.1	136.83	185.4	171.74	157.91	138.91	89.69	153.95	175.84	143.1	177.88	104.94
Merged-chr17-83527874-3	chr17	83527770	83527970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-13537.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	21.4	12.58	25.1	27.35	35.59	26.34	26.57	37.74	51.73	29.62	45.73	30.7
Merged-chr9-100644234-3	chr9	100644135	100644335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 1 of 33)	CpG	787.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	35.13	33.7	29.66	34.19	27.0	45.15	42.19	31.35	37.57	40.67	48.24	19.74
Merged-chr15-79690596-3	chr15	79690486	79690686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-310.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	241.87	232.16	201.37	285.16	241.37	271.24	213.59	233.05	302.7	297.75	351.74	220.23
Merged-chr5-36720913-3	chr5	36720807	36721007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24886.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	25.04	23.9	31.38	26.95	39.27	72.44	38.53	40.35	37.76	46.7	46.73	20.99
Merged-chr11-44470556-3	chr11	44470455	44470655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-7.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	102.16	99.1	127.21	84.06	102.68	134.21	92.01	96.79	124.5	131.55	146.22	73.62
Merged-chr9-114812153-3	chr9	114812049	114812249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	RSINE1|SINE|B4	-30156.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	16.56	16.1	21.68	26.55	56.05	38.26	35.87	41.89	30.49	25.61	33.16	26.31
Merged-chr9-58246242-3	chr9	58246159	58246359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008884, intron 2 of 7)	intron (NM_008884, intron 2 of 7)	3527.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	24.63	17.36	34.23	47.06	36.82	29.48	18.93	29.05	33.83	22.59	41.71	32.27
Merged-chr2-29739627-3	chr2	29739518	29739718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-21910.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	39.98	55.34	61.61	44.64	39.27	63.97	32.55	51.56	38.75	33.64	41.2	34.46
Merged-chr2-52763227-3	chr2	52763168	52763368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-21119.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	18.57	16.85	21.68	16.89	17.18	23.2	18.6	19.04	28.52	22.59	23.62	14.1
Merged-chr6-97829368-5	chr6	97829257	97829457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	22299.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	22.21	22.39	14.83	16.09	25.77	46.72	15.61	15.0	37.37	56.74	26.13	17.54
Merged-chr1-60941457-3	chr1	60941362	60941562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32437.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	28.27	28.17	25.1	34.59	29.86	31.36	25.24	32.97	39.73	19.58	33.16	19.11
Merged-chr6-141070088-3	chr6	141069979	141070179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179190.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	75.51	68.16	85.57	121.87	106.37	100.34	99.65	149.75	104.83	79.33	210.54	75.81
Merged-chr2-132686968-3	chr2	132686874	132687074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358260)	promoter-TSS (NM_001358260)	43.0	NM_001358260	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	52.09	54.33	49.63	41.43	65.46	51.74	39.86	47.05	52.12	57.74	58.79	53.26
Merged-chr14-61681389-3	chr14	61681253	61681453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1020.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	92.47	88.03	57.62	62.74	81.82	142.36	68.1	74.75	118.8	113.48	110.04	72.99
Merged-chr18-11657363-3	chr18	11657261	11657461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045526)	promoter-TSS (NR_045526)	12.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	75.11	60.62	54.76	53.89	66.27	93.44	45.18	70.54	113.69	122.51	105.02	63.91
Merged-chr16-21375433-3	chr16	21375335	21375535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A1|LTR|ERVK	-42079.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	23.02	25.91	21.11	22.12	18.82	17.25	14.28	21.93	20.65	22.09	27.13	10.96
Merged-chr13-24463937-3	chr13	24463821	24464021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 13 of 16)	intron (NM_001111110, intron 13 of 16)	48799.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	40.38	38.74	30.8	49.07	39.68	52.05	35.87	61.57	87.13	62.26	88.94	36.03
Merged-chr15-53328252-1	chr15	53328152	53328352	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	17931.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.27	1.51	5.7	5.23	11.05	6.59	4.32	16.57	4.72	3.51	4.52	5.64
Merged-chr6-54679358-2	chr6	54679259	54679459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-2265.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	73.09	55.59	75.3	68.37	72.0	67.1	71.42	89.16	2.75	0.0	1.0	2.19
Merged-chr19-47465670-3	chr19	47465596	47465796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1285.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	57.34	38.74	50.77	55.5	52.77	69.3	50.49	66.34	33.44	18.08	50.75	31.64
Merged-chr1-55088195-3	chr1	55088100	55088300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008303)	promoter-TSS (NM_008303)	43.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	240.66	229.65	283.52	187.83	211.1	294.76	167.75	210.56	296.21	305.28	285.91	166.97
Merged-chr5-20951893-3	chr5	20951792	20951992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	-70.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	139.31	121.99	122.65	153.64	145.64	145.81	109.95	162.39	160.1	184.27	232.65	98.05
Merged-chr12-46819518-3	chr12	46819415	46819615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	30.28	36.72	22.82	47.46	119.46	119.16	92.01	127.99	77.1	79.83	108.54	36.34
Merged-chr11-97150652-3	chr11	97150580	97150780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-968.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	23.82	31.19	15.97	14.08	22.91	31.67	14.28	20.55	35.99	40.17	23.11	18.17
Merged-chr8-70634270-3	chr8	70634129	70634329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1773.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	52.49	53.58	59.9	45.85	77.73	78.39	38.53	67.71	87.13	59.25	99.49	55.76
Merged-chr7-135650234-3	chr7	135650114	135650314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015548, intron 2 of 2)	intron (NR_015548, intron 2 of 2)	-1685.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	21.0	22.64	34.23	32.58	43.36	35.12	20.59	37.21	30.49	24.1	38.19	14.41
Merged-chr7-141444073-3	chr7	141443958	141444158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360523)	promoter-TSS (NM_001360523)	-33.0	NR_153591	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	31.9	24.15	36.51	27.75	52.77	34.81	33.55	42.65	33.24	27.11	36.68	26.63
Merged-chr3-108257087-3	chr3	108257011	108257211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011967, exon 1 of 9)	5' UTR (NM_011967, exon 1 of 9)	185.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	112.66	139.35	142.04	131.52	148.91	181.87	133.86	127.82	197.47	227.96	205.01	123.11
Merged-chr4-32565197-3	chr4	32565083	32565283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	6479.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	53.7	47.29	55.9	35.39	56.87	50.8	49.83	41.27	54.29	42.68	66.83	21.62
Merged-chr2-144270706-3	chr2	144270583	144270783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289630)	promoter-TSS (NM_001289630)	-111.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	110.64	115.7	103.25	97.33	101.05	116.65	113.27	73.96	111.52	108.45	149.74	91.79
Merged-chr16-50588367-3	chr16	50588248	50588448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2155.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	38.76	41.75	74.16	72.8	59.32	46.41	63.11	105.76	74.35	49.71	68.34	50.44
Merged-chr3-95519085-3	chr3	95518982	95519182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-7704.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	29.07	30.69	48.49	34.99	47.87	54.56	31.56	39.42	50.16	48.2	40.2	32.89
Merged-chr6-120466747-3	chr6	120466634	120466834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	3537.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	46.44	41.0	50.2	44.24	65.87	47.35	44.18	61.29	42.09	34.14	41.71	22.24
Merged-chr4-133177055-1	chr4	133176955	133177155	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-18600.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	5.65	2.01	9.7	6.44	22.09	16.93	17.94	35.75	6.1	6.03	12.56	4.39
Merged-chr18-65802432-3	chr18	65802313	65802513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025468, intron 1 of 5)	intron (NM_025468, intron 1 of 5)	1835.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	40.38	26.66	25.1	20.11	45.0	50.17	26.57	45.67	40.32	49.21	46.73	37.59
Merged-chr2-117403916-3	chr2	117403817	117404017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61040.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	28.67	17.1	30.8	28.96	23.73	22.89	22.92	29.05	40.71	32.64	31.15	22.24
Merged-chr18-56753658-3	chr18	56753556	56753756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010721)	TTS (NM_010721)	45843.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	37.55	23.64	41.07	34.59	35.59	42.33	41.85	41.94	29.9	19.58	42.71	29.45
Merged-chr6-148212133-3	chr6	148212031	148212231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015615)	promoter-TSS (NR_015615)	-157.0	NR_015615	320737.0	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	279.02	275.93	217.34	252.58	310.1	334.9	191.99	215.86	329.45	296.74	276.87	196.1
Merged-chr8-109705489-3	chr8	109705399	109705599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-47.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	62.99	46.78	58.76	52.29	66.27	57.07	35.87	54.98	84.38	44.19	91.95	54.82
Merged-chr17-29432112-3	chr17	29432006	29432206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-58939.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	185.34	160.73	172.28	193.86	146.87	186.26	165.09	125.69	228.35	243.02	251.74	131.89
Merged-chr10-69212652-3	chr10	69212565	69212765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	8.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	28.27	18.86	23.96	24.13	20.86	22.26	25.24	26.02	21.05	35.15	26.63	18.17
Merged-chr5-67302094-3	chr5	67301982	67302182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4873.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	38.36	25.91	55.9	47.06	35.18	35.75	30.89	37.15	42.09	44.69	42.21	29.13
Merged-chr11-100378648-3	chr11	100378546	100378746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010593, intron 7 of 13)	intron (NM_010593, intron 7 of 13)	19144.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	18.57	18.86	22.82	29.36	24.96	25.71	23.25	33.5	31.27	22.09	46.23	20.68
Merged-chr18-4302866-3	chr18	4302757	4302957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50096.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	32.3	31.69	42.78	41.02	54.41	36.37	36.54	56.97	48.98	35.65	78.39	38.85
Merged-chr2-113450111-3	chr2	113450003	113450203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	9039.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	56.94	41.75	49.63	36.2	65.87	80.27	72.75	101.33	77.1	79.33	76.88	42.92
Merged-chr2-132019411-3	chr2	132019273	132019473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	10615.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	19.38	19.87	21.11	14.88	24.55	20.07	30.23	23.66	19.47	14.56	16.58	13.47
Merged-chr13-9764037-3	chr13	9763926	9764126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347476)	promoter-TSS (NM_001347476)	-216.0	NM_001347476	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	29.07	27.67	23.96	28.56	22.5	19.76	27.57	24.31	35.4	44.69	40.7	36.65
Merged-chr13-3782722-3	chr13	3782608	3782808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21610.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	51.69	65.15	51.34	43.44	61.77	54.56	59.79	46.12	45.04	57.74	75.37	20.36
Merged-chr8-70001831-3	chr8	70001717	70001917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5433.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	54.51	59.36	54.76	62.74	55.64	59.27	41.85	44.86	62.55	52.72	75.87	38.22
Merged-chr9-108854093-3	chr9	108854014	108854214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	71.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	140.12	137.33	149.46	106.18	142.37	225.46	83.37	130.71	168.37	171.72	183.91	109.33
Merged-chr1-125470963-3	chr1	125470837	125471037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35210.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	46.44	36.72	61.04	47.46	46.64	42.33	51.15	59.44	56.25	37.16	60.3	43.54
Merged-chr3-144570329-3	chr3	144570235	144570435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	-92.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	289.93	259.33	235.03	283.55	262.64	321.41	202.96	268.57	323.16	258.58	401.99	198.3
Merged-chr12-16877043-3	chr12	16876943	16877143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17935.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	14.13	15.59	14.83	12.47	24.96	25.71	10.63	16.6	15.74	27.11	27.64	10.96
Merged-chr19-47090319-1	chr19	47090219	47090419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	306.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	6.46	6.04	5.13	10.86	15.55	6.27	4.98	9.28	8.46	8.03	16.08	7.83
Merged-chr19-38021457-1	chr19	38021357	38021557	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	22120.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.81	4.78	0.0	4.42	4.09	5.64	7.31	7.57	4.72	1.0	0.0	1.25
Merged-chr15-38371868-3	chr15	38371771	38371971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71160.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	68.65	80.74	79.86	38.21	94.5	124.8	94.67	84.76	97.56	87.37	112.56	62.03
Merged-chr4-139175448-3	chr4	139175334	139175534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033543)	TTS (NR_033543)	5221.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	61.78	37.98	47.35	49.87	63.0	91.56	70.75	65.13	51.34	40.17	56.28	41.35
Merged-chr10-119240178-3	chr10	119240068	119240268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-113.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	228.14	226.63	220.77	173.75	232.78	265.91	181.7	233.94	320.8	317.83	326.11	177.94
Merged-chr11-106419640-3	chr11	106419539	106419739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 9 of 21)	intron (NM_023913, intron 9 of 21)	-36858.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	42.8	29.43	43.93	27.35	54.41	44.84	32.88	47.83	40.91	31.63	24.12	34.15
Merged-chr11-22860536-3	chr11	22860436	22860636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169114)	promoter-TSS (NM_001169114)	-200.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	15.34	15.34	23.39	17.29	21.68	23.2	15.94	13.51	16.52	25.11	15.07	9.08
Merged-chr9-122310890-3	chr9	122310785	122310985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-16462.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	18.17	31.44	22.25	20.91	31.09	51.11	27.24	26.64	27.73	31.13	33.67	26.63
Merged-chr1-10280380-3	chr1	10280280	10280480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47710.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	24.23	29.18	46.21	22.93	27.82	26.03	15.94	30.9	37.76	30.13	43.72	27.57
Merged-chr2-117989350-3	chr2	117989218	117989418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	121884.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	28.67	11.32	27.95	13.67	29.05	31.67	39.53	31.82	24.98	23.1	50.75	31.33
Merged-chr1-162622097-1	chr1	162621997	162622197	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17053.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	0.4	1.01	0.0	0.0	71.59	69.93	69.09	62.75	2.75	0.0	0.0	0.94
Merged-chr4-95052304-3	chr4	95052215	95052415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010591)	promoter-TSS (NM_010591)	-93.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	295.17	264.61	293.79	258.21	289.24	341.79	260.42	284.44	390.62	386.12	397.46	237.77
Merged-chr7-127290411-3	chr7	127290317	127290517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5843.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	62.18	60.62	48.49	50.68	58.09	80.27	35.21	39.0	53.5	67.28	59.29	30.7
Merged-chr2-75659102-3	chr2	75658999	75659199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198090)	promoter-TSS (NM_198090)	-160.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	216.03	218.58	185.4	207.54	242.19	222.64	197.31	232.15	259.23	252.06	317.07	162.27
Merged-chr17-5573227-3	chr17	5573151	5573351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	X7A_LINE|LINE|CR1	80651.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	123.16	63.64	130.63	128.3	192.69	128.88	142.17	198.67	176.82	148.12	206.52	110.27
Merged-chr1-74817036-3	chr1	74816940	74817140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25021.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	52.09	48.04	55.33	46.66	50.73	58.64	41.52	41.38	74.15	57.24	84.42	46.05
Merged-chr7-44952926-3	chr7	44952818	44953018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077591, intron 6 of 10)	intron (NM_001077591, intron 6 of 10)	9678.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	89.64	74.2	90.13	70.38	102.28	117.59	65.77	89.92	107.39	122.01	104.52	56.07
Merged-chr19-43520546-3	chr19	43520444	43520644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4061.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	52.09	27.92	45.64	46.25	36.0	42.96	38.53	56.89	74.54	65.78	93.96	62.03
Merged-chr5-65199575-3	chr5	65199459	65199659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-137.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	142.94	176.82	135.77	188.63	200.05	224.83	147.48	207.93	212.62	197.83	282.9	136.9
Merged-chr19-3907071-3	chr19	3906974	3907174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	59.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	46.44	54.33	39.36	45.45	47.05	63.97	33.88	37.6	66.87	66.28	89.94	43.86
Merged-chr7-16263172-3	chr7	16263101	16263301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3661.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	26.25	33.96	26.24	22.93	22.09	38.57	13.29	21.53	30.29	21.09	26.13	15.66
Merged-chr11-30786736-3	chr11	30786634	30786834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	14959.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	24.63	16.1	27.95	27.75	20.46	15.68	16.28	25.26	34.62	28.62	40.2	17.86
Merged-chr2-124608861-3	chr2	124608769	124608969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-1427.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	73.49	70.43	99.26	78.83	80.59	64.6	78.06	83.86	74.15	57.74	142.2	66.73
Merged-chr3-95281844-3	chr3	95281727	95281927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173347, exon 1 of 8)	5' UTR (NM_173347, exon 1 of 8)	249.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	62.18	67.41	55.33	65.96	110.87	89.37	40.86	81.48	96.57	110.97	110.55	51.38
Merged-chr8-56071015-3	chr8	56070914	56071114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	RLTR28|LTR|ERVL	130189.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	55.72	52.32	95.27	65.56	73.23	92.82	114.6	108.22	121.75	116.49	142.2	70.48
Merged-chr10-81320761-3	chr10	81320641	81320841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-362.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	245.91	254.29	223.62	247.76	261.83	320.16	227.87	267.56	318.04	358.0	449.72	213.02
Merged-chr6-67036615-3	chr6	67036502	67036702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	3.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	35.94	35.72	31.38	32.18	32.73	42.65	37.2	46.63	43.47	45.69	69.34	31.01
Merged-chr9-45113184-2	chr9	45113084	45113284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-4692.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	23.02	11.57	31.38	31.77	28.64	38.57	14.95	28.07	5.31	4.52	6.03	3.76
Merged-chrX-96130314-3	chrX	96130240	96130440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	34295.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	58.15	46.53	67.88	41.43	36.82	66.79	30.89	52.71	64.91	60.75	64.82	42.6
Merged-chr9-72660334-3	chr9	72660234	72660434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1997.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	56.94	68.92	52.48	60.73	47.87	54.56	42.52	46.63	81.43	42.68	47.23	32.27
Merged-chr9-108306126-3	chr9	108306037	108306237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	22.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	221.68	192.42	151.74	139.16	199.23	258.38	154.13	143.92	259.04	319.84	237.17	154.44
Merged-chr1-92640599-3	chr1	92640509	92640709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1339.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	31.09	20.37	31.95	24.53	28.64	30.73	35.21	27.03	25.18	29.12	18.59	14.72
Merged-chr13-49196828-5	chr13	49196678	49196878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013610)	TTS (NM_013610)	9231.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	19.79	20.37	22.25	18.5	39.27	53.93	36.21	21.59	32.45	38.66	34.17	21.3
Merged-chr1-191443764-1	chr1	191443664	191443864	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 3 of 5)	intron (NR_151615, intron 3 of 5)	21284.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	6.86	10.82	6.28	0.8	4.5	10.66	3.99	1.21	27.73	17.07	7.54	5.95
Merged-chr17-26508259-3	chr17	26508283	26508483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	89.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	171.61	159.47	156.31	180.59	124.78	175.91	145.16	167.24	176.04	201.34	253.25	137.21
Merged-chr8-70561966-1	chr8	70561866	70562066	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	22291.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.83	5.53	3.42	2.41	20.05	31.67	21.26	24.7	6.49	9.54	9.55	6.89
Merged-chr8-35387117-3	chr8	35387030	35387230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177741, exon 2 of 2)	3' UTR (NM_177741, exon 2 of 2)	11389.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	16.15	23.64	48.49	48.26	25.36	38.57	36.54	45.22	45.24	40.67	56.28	39.47
Merged-chr16-59601035-3	chr16	59600935	59601135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35910.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	31.5	34.21	25.67	23.33	47.05	39.51	31.89	37.43	42.29	23.6	67.33	33.21
Merged-chr3-103020468-3	chr3	103020362	103020562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144901)	promoter-TSS (NM_144901)	-84.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	203.11	241.22	223.62	246.15	217.23	295.39	191.33	211.99	285.98	299.25	317.57	156.63
Merged-chr4-101742200-3	chr4	101742117	101742317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24810.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	27.46	34.71	23.39	51.08	42.96	51.11	47.83	51.87	87.72	73.81	95.97	57.33
Merged-chr6-86779414-3	chr6	86779326	86779526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	L1M1|LINE|L1	-4312.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	67.03	52.32	89.56	54.3	55.23	79.65	61.45	71.66	84.38	52.22	54.27	36.65
Merged-chr4-45795315-3	chr4	45795224	45795424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3698.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	26.65	20.88	28.52	23.33	24.96	19.76	21.92	20.02	50.55	25.11	51.76	35.4
Merged-chr3-129949581-3	chr3	129949476	129949676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	20630.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	28.27	23.64	54.76	34.19	42.96	42.65	34.88	72.08	32.65	40.17	61.81	29.13
Merged-chr4-132509769-3	chr4	132509628	132509828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	728.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	21.8	8.8	14.26	19.31	11.86	14.11	21.26	24.2	13.37	14.56	28.14	18.17
Merged-chr19-53332163-3	chr19	53332071	53332271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	1763.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	126.79	79.73	154.59	155.25	114.14	94.07	170.74	142.26	100.9	114.98	167.33	85.84
Merged-chr3-27617069-3	chr3	27617017	27617217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	MER126|DNA|DNA	-32122.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	31.5	20.63	38.22	47.86	42.14	61.77	38.2	57.95	47.99	45.19	68.34	28.82
Merged-chr9-58537962-3	chr9	58537880	58538080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133983, intron 1 of 6)	intron (NM_133983, intron 1 of 6)	2960.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	26.65	16.6	29.66	19.31	17.59	20.38	20.26	15.03	31.27	25.61	28.14	16.6
Merged-chr4-130802233-3	chr4	130802123	130802323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	9686.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	55.72	48.8	81.58	66.77	87.96	70.55	57.13	61.43	73.95	70.29	72.36	70.48
Merged-chr1-106628439-3	chr1	106628327	106628527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	RCHARR1|DNA|hAT-Charlie	-81796.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	25.44	20.63	18.83	29.36	28.64	54.25	19.93	45.5	32.65	46.19	56.28	36.03
Merged-chr4-149617179-3	chr4	149617079	149617279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290989, intron 2 of 17)	ID_B1|SINE|B4	30711.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	28.27	23.14	33.66	34.59	29.86	31.67	15.61	18.93	34.42	25.11	39.7	21.62
Merged-chr5-92486937-3	chr5	92486825	92487025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	Lx8|LINE|L1	18732.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	52.9	60.37	54.19	53.89	118.64	124.8	86.03	82.21	97.16	130.05	126.63	57.64
Merged-chr11-95514684-3	chr11	95514609	95514809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130858)	promoter-TSS (NM_130858)	-144.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	30.28	41.75	31.38	22.93	29.46	25.09	14.28	20.97	19.67	21.09	23.11	14.1
Merged-chr11-89003394-3	chr11	89003281	89003481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3978.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	12.92	12.32	12.55	17.29	19.23	17.56	20.59	20.78	30.88	22.59	39.19	33.21
Merged-chr9-118646028-3	chr9	118645918	118646118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	39309.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	29.88	11.07	52.48	48.26	79.78	78.71	123.9	98.05	57.24	53.22	72.86	52.0
Merged-chr15-99000790-1	chr15	99000690	99000890	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14825.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	4.53	2.28	0.4	3.27	4.7	2.99	2.55	7.47	4.02	1.0	5.33
Merged-chr16-91527254-3	chr16	91527139	91527339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105786)	TTS (NR_105786)	305.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	52.09	31.19	40.5	36.6	40.91	47.35	24.25	26.38	58.61	62.76	65.32	30.07
Merged-chr9-55257294-3	chr9	55257199	55257399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	26326.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	16.96	21.63	22.82	7.64	41.73	24.77	23.25	26.44	30.09	35.65	19.6	21.3
Merged-chr11-43426243-3	chr11	43426159	43426359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013917)	promoter-TSS (NM_013917)	-11.0	NM_001131054	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	48.86	37.23	48.49	33.38	49.09	39.82	42.52	45.08	76.51	62.26	118.08	41.66
Merged-chr9-45181924-3	chr9	45181821	45182021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-13845.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	27.86	30.94	35.37	16.49	35.18	53.62	17.61	16.57	67.07	53.22	41.2	15.98
Merged-chr3-89279681-3	chr3	89279574	89279774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-29.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	36.75	24.9	26.24	42.23	41.73	27.59	20.93	37.51	26.55	33.14	46.23	12.22
Merged-chr6-33249042-3	chr6	33248951	33249151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-77.0	NM_009148	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	116.29	126.52	135.2	165.71	186.96	143.3	133.2	214.82	219.11	155.65	255.26	131.57
Merged-chr1-95323183-3	chr1	95323072	95323272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	9544.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	71.88	56.59	70.17	69.58	86.32	92.82	57.13	122.61	96.18	89.88	107.53	53.26
Merged-chr7-16100668-3	chr7	16100561	16100761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2081.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	35.53	41.75	53.05	36.6	48.68	58.32	29.56	57.76	60.38	47.7	65.83	40.1
Merged-chr15-66833530-3	chr15	66833415	66833615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 43 of 47)	intron (NM_009375, intron 43 of 47)	-1686.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	21.4	21.13	28.52	30.97	23.73	24.15	32.22	27.17	20.46	15.57	22.11	19.42
Merged-chr14-33202340-3	chr14	33202256	33202456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14467.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	26.25	29.18	26.81	31.37	40.09	48.6	32.22	51.93	42.48	30.63	62.31	34.15
Merged-chr4-55531451-4	chr4	55531337	55531537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010637, intron 2 of 4)	CpG	1038.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	20.59	25.4	18.83	19.71	20.86	31.36	15.61	21.22	27.54	26.61	28.64	31.01
Merged-chr1-170934595-3	chr1	170934494	170934694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7011.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	52.09	53.07	59.9	67.57	60.96	50.49	45.51	86.89	59.79	63.27	76.88	59.21
Merged-chr3-36475133-3	chr3	36475026	36475226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028183)	promoter-TSS (NM_028183)	398.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	45.23	46.78	49.06	43.44	46.23	55.19	48.83	60.14	62.94	47.7	73.86	43.54
Merged-chr3-102995743-3	chr3	102995647	102995847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025679)	promoter-TSS (NM_025679)	7.0	NM_025679	66641.0	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	67.03	73.45	118.08	81.24	86.32	87.49	72.75	114.56	89.1	101.93	127.13	80.2
Merged-chr14-21076040-3	chr14	21075926	21076126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-126.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	175.65	141.36	149.46	170.53	214.37	246.47	170.07	232.01	188.23	180.76	254.26	129.69
Merged-chr12-52308759-3	chr12	52308657	52308857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	171852.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	20.19	7.04	31.38	31.77	35.59	23.83	40.19	63.56	29.9	22.59	63.31	20.36
Merged-chr7-44869926-3	chr7	44869847	44870047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-159.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	107.01	91.05	94.7	106.18	98.59	158.35	119.25	114.79	132.96	128.54	175.37	76.44
Merged-chr15-94591558-3	chr15	94591455	94591655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1731.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	36.34	25.66	38.79	25.34	35.59	63.97	47.83	42.98	45.04	42.18	45.22	24.43
Merged-chr9-44579581-3	chr9	44579481	44579681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25311.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	46.44	27.92	41.07	47.06	52.37	77.14	44.51	49.88	77.3	102.43	84.92	58.58
Merged-chr12-102296605-3	chr12	102296505	102296705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12964.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	33.52	43.01	25.67	23.33	60.96	81.53	39.2	40.37	55.47	46.19	35.17	20.05
Merged-chr1-45907561-1	chr1	45907461	45907661	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_016917)	TTS (NM_016917)	18033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	2.83	2.52	1.14	0.8	6.14	8.47	3.65	7.93	8.26	4.52	4.52	10.34
Merged-chr3-41943253-1	chr3	41943153	41943353	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	200635.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	2.82	0.41	3.76	7.97	13.63	2.56	0.0	5.02	0.31
Merged-chr7-41599239-3	chr7	41599155	41599355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34276.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	131.64	112.43	168.28	151.23	147.69	143.3	93.34	105.56	170.14	149.63	201.5	132.51
Merged-chr5-81058355-3	chr5	81058259	81058459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	36766.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	30.69	26.66	36.51	63.95	45.0	36.06	54.14	65.78	59.99	55.73	76.38	45.42
Merged-chr10-127642578-2	chr10	127642473	127642673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-413.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	17.36	10.56	12.55	16.49	9.82	15.99	10.3	14.19	18.88	30.13	25.63	14.72
Merged-chr2-4917564-3	chr2	4917478	4917678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1418.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	35.94	20.37	47.35	37.0	36.0	30.42	21.92	33.59	40.52	34.14	36.18	23.81
Merged-chr1-164275641-3	chr1	164275534	164275734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	36.0	NM_029115	74895.0	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	53.3	51.81	64.46	44.24	58.91	62.71	64.44	86.36	92.84	79.83	152.25	46.68
Merged-chr17-6794609-3	chr17	6794494	6794694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11814.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	67.43	51.31	59.33	74.0	82.23	76.51	38.53	72.22	92.05	75.32	111.05	54.51
Merged-chr9-46012715-3	chr9	46012602	46012802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027498)	promoter-TSS (NM_027498)	-12.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	97.31	82.5	65.6	57.11	99.41	99.4	59.46	63.39	110.54	124.52	121.1	71.42
Merged-chr9-20898623-3	chr9	20898525	20898725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016876)	promoter-TSS (NM_016876)	-35.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	25.44	20.37	27.38	21.72	41.73	33.87	12.95	26.38	38.94	35.65	59.29	30.7
Merged-chr11-118459301-3	chr11	118459187	118459387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER73|LTR|ERVL	-4292.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	54.11	36.22	60.47	68.78	75.68	87.17	130.54	135.65	86.54	59.25	142.71	61.09
Merged-chrX-74393227-3	chrX	74393130	74393330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161423)	promoter-TSS (NM_001161423)	44.0	NM_025473	66294.0	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	60.97	50.05	41.64	55.91	76.09	87.8	52.15	88.46	80.45	68.29	116.07	34.77
Merged-chr1-119913200-3	chr1	119913107	119913307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-39.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	71.07	67.16	88.99	91.3	90.0	112.57	84.37	132.56	129.03	110.46	143.21	101.5
Merged-chr14-54864182-3	chr14	54864062	54864262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177705)	promoter-TSS (NM_001177705)	-4.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	82.78	80.99	107.82	100.15	100.23	109.12	77.06	112.96	106.6	124.52	182.9	86.15
Merged-chr16-85173742-3	chr16	85173659	85173859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-52.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	47.24	34.21	50.77	51.88	49.09	69.93	31.89	71.19	78.28	62.26	103.01	57.95
Merged-chr4-132303330-3	chr4	132303245	132303445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	11.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	31.09	20.88	41.07	32.58	28.23	50.49	32.22	32.36	38.94	31.13	43.21	24.75
Merged-chr7-25683715-3	chr7	25683633	25683833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	2575.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	41.59	38.99	56.48	58.72	75.68	49.23	47.17	54.42	49.37	39.16	85.42	36.34
Merged-chr10-94514874-3	chr10	94514772	94514972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172051)	promoter-TSS (NM_172051)	15.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	21.4	17.36	22.25	14.88	41.32	18.81	20.93	34.32	23.8	24.6	21.1	17.86
Merged-chr18-39145369-2	chr18	39145266	39145466	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	152221.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.23	3.52	13.69	7.64	24.55	26.97	10.96	16.51	7.47	22.59	26.63	14.72
Merged-chr1-64876449-3	chr1	64876337	64876537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	80387.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	40.38	53.58	91.84	63.55	62.18	55.5	41.85	82.09	88.12	72.3	98.49	43.54
Merged-chr14-19985280-3	chr14	19985143	19985343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7994.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	37.96	45.02	73.02	114.63	75.68	39.82	72.41	89.86	59.99	54.23	86.43	46.68
Merged-chr7-127512966-3	chr7	127512869	127513069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024331)	promoter-TSS (NR_024331)	-100.0	NR_024331	629159.0	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	49.26	43.01	37.65	20.91	40.5	45.78	41.52	30.31	56.84	50.21	56.28	27.88
Merged-chr17-46640076-3	chr17	46639961	46640161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029091, exon 6 of 17)	exon (NM_029091, exon 6 of 17)	6019.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	27.86	40.5	33.09	30.97	24.96	42.02	23.92	34.68	29.31	29.12	24.12	16.92
Merged-chr4-5644112-3	chr4	5644021	5644221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	31.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	26.25	29.43	21.11	27.35	51.14	32.3	44.18	42.53	39.14	35.15	62.31	32.58
Merged-chr4-3723014-3	chr4	3722906	3723106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8042.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	39.57	36.22	45.64	45.85	48.27	57.38	42.52	57.84	54.09	49.21	63.82	32.27
Merged-chr2-27765088-3	chr2	27765008	27765208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54525.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	43.21	39.24	54.19	32.18	47.46	75.88	41.19	54.25	73.95	78.33	76.38	52.94
Merged-chr19-44315200-1	chr19	44315100	44315300	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12029.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	3.23	8.8	10.84	11.66	4.09	6.27	13.62	7.12	17.11	14.06	15.07	10.02
Merged-chr5-17839767-3	chr5	17839650	17839850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-3854.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	115.08	77.47	77.01	115.83	110.05	114.14	76.4	131.02	127.85	146.11	112.05	63.59
Merged-chr10-83637546-3	chr10	83637418	83637618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	11146.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	97.72	85.77	113.52	130.71	96.96	72.75	76.73	107.08	76.71	63.77	95.47	45.42
Merged-chr7-55842232-3	chr7	55842132	55842332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164661, exon 1 of 32)	5' UTR (NM_001164661, exon 1 of 32)	161.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	44.01	29.68	31.95	31.77	47.46	93.44	51.49	37.09	62.15	59.75	84.42	26.31
Merged-chr11-118981160-3	chr11	118980989	118981189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7092.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	6.46	10.82	13.69	7.24	9.82	10.03	7.31	9.34	18.1	10.04	21.1	16.6
Merged-chr11-101587889-3	chr11	101587795	101587995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359325, intron 4 of 7)	RMER19B|LTR|ERVK	5596.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	44.01	28.42	29.66	28.96	63.82	61.46	20.59	45.14	62.94	37.66	68.84	48.87
Merged-chr16-91865180-3	chr16	91865038	91865238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	66492.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	15.34	18.36	23.96	17.7	17.18	15.37	29.23	37.63	20.85	12.55	29.65	16.92
Merged-chr1-106581989-3	chr1	106581906	106582106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-35375.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	33.92	26.91	31.95	63.55	48.68	37.0	47.83	76.26	55.86	63.77	100.5	48.87
Merged-chr17-87106892-3	chr17	87106793	87106993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-786.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	34.32	26.16	22.25	28.56	24.96	33.87	32.55	33.17	43.47	51.21	42.71	24.75
Merged-chr18-36472487-3	chr18	36472372	36472572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17977.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	105.39	86.78	80.43	81.24	101.05	148.32	111.28	97.35	92.84	97.91	117.58	57.64
Merged-chr7-80774395-3	chr7	80774290	80774490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28941.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	43.61	24.15	25.67	28.56	32.73	48.29	22.59	48.14	47.01	61.76	56.28	32.89
Merged-chr4-139615426-1	chr4	139615326	139615526	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 8 of 8)	MTD|LTR|ERVL-MaLR	-7468.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	7.67	4.02	6.28	3.62	2.45	7.53	2.66	1.12	12.78	6.03	22.11	15.35
Merged-chr17-29264120-3	chr17	29263997	29264197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026845)	promoter-TSS (NM_026845)	-126.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	15.75	29.43	22.25	32.98	20.46	36.37	24.25	20.13	24.59	25.11	23.62	20.36
Merged-chr7-113378103-3	chr7	113378011	113378211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-8772.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	68.65	56.85	60.47	35.8	59.32	87.17	56.47	55.6	72.77	86.86	86.43	48.24
Merged-chr17-35425631-1	chr17	35425531	35425731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_023124, exon 3 of 5)	exon (NM_023124, exon 3 of 5)	754.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	9.29	12.07	6.28	6.03	7.77	4.39	5.98	2.44	6.88	8.54	4.02	6.27
Merged-chr17-27556510-3	chr17	27556414	27556614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-60.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	69.86	86.02	57.62	51.08	69.55	91.88	41.19	49.07	114.28	89.88	70.35	50.44
Merged-chr5-7955769-3	chr5	7955681	7955881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4691.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	31.9	20.88	49.06	46.25	54.0	38.88	56.14	75.67	47.4	44.69	47.74	43.86
Merged-chr1-37486622-3	chr1	37486510	37486710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1995.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	60.17	35.47	76.44	41.43	67.91	76.83	52.82	77.52	78.68	68.79	80.4	52.32
Merged-chr5-72219814-3	chr5	72219713	72219913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	16470.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	147.39	169.53	161.44	184.21	153.41	193.79	178.71	169.12	165.81	195.82	255.76	109.64
Merged-chr16-55776513-3	chr16	55776412	55776612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45626.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	60.17	64.89	43.35	12.47	80.18	133.9	52.48	33.22	139.45	147.62	97.48	35.09
Merged-chr8-70510472-3	chr8	70510368	70510568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348229)	promoter-TSS (NM_001348229)	-18.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	104.58	80.24	99.83	78.43	86.73	109.12	63.44	76.63	127.65	108.96	104.01	89.28
Merged-chr11-100397903-3	chr11	100397808	100398008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	-118.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	156.27	150.67	133.49	122.27	159.14	202.25	101.98	130.46	202.79	228.46	257.77	120.92
Merged-chr2-128437275-1	chr2	128437175	128437375	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-7924.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.83	4.28	10.27	0.8	29.86	31.04	21.26	19.77	7.28	8.54	5.02	2.51
Merged-chr12-112618140-3	chr12	112618041	112618241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	76.72	66.4	47.92	35.8	68.73	123.23	49.49	60.9	114.28	87.87	99.49	44.8
Merged-chr15-76080943-3	chr15	76080844	76081044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133691)	promoter-TSS (NM_133691)	2.0	NM_133691	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	86.82	94.83	83.86	40.62	84.68	119.47	36.21	57.79	116.64	121.01	115.57	79.57
Merged-chr2-155100870-3	chr2	155100789	155100989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040634)	promoter-TSS (NR_040634)	-810.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	21.4	19.37	41.64	33.38	29.86	22.58	25.58	35.5	25.96	28.12	36.18	42.29
Merged-chr6-47813518-3	chr6	47813423	47813623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-11.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	225.72	217.82	254.99	278.32	247.51	315.14	304.93	316.21	292.28	305.28	437.66	215.21
Merged-chr13-21169848-3	chr13	21169740	21169940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10091.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	41.59	32.2	29.09	40.22	35.59	29.16	26.57	26.86	33.63	25.61	21.1	19.11
Merged-chr15-55196583-3	chr15	55196488	55196688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037937, intron 4 of 8)	intron (NM_001037937, intron 4 of 8)	63152.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	87.22	74.7	96.98	117.84	114.14	93.13	84.37	137.3	85.17	82.85	111.55	65.16
Merged-chr18-46516031-5	chr18	46515945	46516145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173423, intron 2 of 2)	L1MB8|LINE|L1	9926.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	7.67	16.1	9.13	10.05	5.32	27.59	13.29	8.21	22.23	29.62	26.63	14.1
Merged-chr15-57694534-3	chr15	57694392	57694592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-175.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	36.75	25.91	26.81	17.7	31.09	42.65	20.59	30.31	39.53	27.11	21.1	26.31
Merged-chr2-5793977-3	chr2	5793876	5794076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356501)	TTS (NM_001356501)	-51058.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	22.61	20.63	30.8	29.76	115.37	115.39	99.32	76.85	85.36	74.31	90.95	53.57
Merged-chr16-23375092-3	chr16	23374980	23375180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-54053.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	67.84	53.07	118.08	130.71	80.59	45.78	103.64	98.5	60.97	51.72	104.52	65.79
Merged-chr2-98666490-5	chr2	98666369	98666569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1198812.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1151.63	1780.57	1280.1	1810.3	1020.71	603.0	1212.09	1050.2	1249.76	1354.18	1085.86	2149.01
Merged-chr3-122274287-3	chr3	122274194	122274394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153806)	promoter-TSS (NM_153806)	-120.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	186.96	212.54	195.67	230.46	198.01	268.1	183.03	277.82	246.45	219.42	319.58	142.22
Merged-chr18-4803447-3	chr18	4803305	4803505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9081.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	22.21	24.4	43.93	44.24	74.05	71.49	59.13	67.96	41.3	45.69	88.44	27.25
Merged-chr11-3913928-3	chr11	3913834	3914034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	730.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	55.32	49.3	58.76	49.07	78.96	67.1	54.14	68.13	67.27	42.68	77.88	43.54
Merged-chr1-173767035-3	chr1	173766934	173767134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008329)	promoter-TSS (NM_008329)	-115.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	110.64	131.05	116.37	146.8	202.1	206.96	175.39	196.68	162.86	134.56	178.38	85.84
Merged-chr1-161070782-3	chr1	161070686	161070886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131028)	promoter-TSS (NR_131028)	19.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	210.38	209.02	220.2	193.06	201.69	256.82	190.0	228.73	262.38	290.72	356.26	156.32
Merged-chr8-95852495-3	chr8	95852386	95852586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1005.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	115.08	118.22	132.92	96.53	157.5	204.76	117.59	151.29	175.64	150.63	198.98	124.05
Merged-chr11-3135738-2	chr11	3135643	3135843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 26 of 33)	exon (NM_030207, exon 26 of 33)	11722.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	18.57	19.37	34.8	15.28	16.77	22.89	24.58	23.07	0.39	1.51	0.0	1.88
Merged-chr5-148399375-3	chr5	148399264	148399464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007513, intron 1 of 12)	CpG	540.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	35.13	23.9	31.95	20.91	29.86	32.3	24.58	30.25	34.03	40.17	57.79	23.18
Merged-chr1-134962535-3	chr1	134962430	134962630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-35.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	77.93	67.41	55.9	63.15	120.28	116.65	98.99	122.02	134.73	126.53	179.39	110.27
Merged-chr19-5637822-1	chr19	5637722	5637922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_009045, exon 1 of 11)	5' UTR (NM_009045, exon 1 of 11)	332.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	22.61	45.02	21.11	34.19	24.96	26.03	22.59	22.37	39.14	41.67	34.17	10.34
Merged-chr1-36244276-3	chr1	36244173	36244373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198899)	promoter-TSS (NM_198899)	29.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	107.81	119.22	128.92	94.92	126.41	146.12	92.34	133.46	165.61	121.51	103.51	67.04
Merged-chr8-115427583-3	chr8	115427483	115427683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	279311.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	32.71	29.43	22.25	20.91	61.37	61.77	35.87	40.04	46.22	56.24	62.81	29.45
Merged-chr16-44118225-3	chr16	44118147	44118347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	B1F|SINE|Alu	21012.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	25.84	23.64	31.95	26.14	40.5	35.43	28.57	45.81	50.75	46.7	49.75	16.92
Merged-chr10-67004274-3	chr10	67004185	67004385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-790.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	56.53	34.21	62.75	47.86	46.64	46.1	50.82	64.63	64.71	47.2	80.9	34.77
Merged-chr17-34025176-1	chr17	34025076	34025276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-84.0	NR_029800	723823.0		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	15.75	17.86	15.97	10.05	13.5	7.84	4.65	7.07	13.37	22.59	13.57	13.16
Merged-chr10-10462611-1	chr10	10462511	10462711	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	9703.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.4	0.5	2.28	0.4	0.0	2.82	1.33	2.8	21.64	15.57	10.55	4.7
Merged-chr17-29489736-3	chr17	29489618	29489818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1327.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	68.65	60.37	53.05	27.35	49.5	108.5	33.22	17.36	93.62	106.95	66.83	26.63
Merged-chr16-17694923-3	chr16	17694828	17695028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	27972.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	84.8	50.31	90.7	90.09	84.28	108.18	77.73	131.22	67.46	43.68	81.9	52.94
Merged-chr17-47757283-3	chr17	47757191	47757391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	19360.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	74.7	71.18	41.07	39.42	78.55	90.94	68.76	73.32	123.72	66.28	57.79	41.98
Merged-chr8-126595635-3	chr8	126595538	126595738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2202.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	22.21	17.86	15.97	14.48	29.46	25.71	6.31	21.45	18.49	29.62	27.13	22.56
Merged-chr5-143518368-3	chr5	143518275	143518475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	9618.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	40.38	48.54	49.63	34.19	51.55	75.26	52.82	49.93	41.11	60.25	38.19	22.56
Merged-chr17-34000349-3	chr17	34000249	34000449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-2.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	254.8	287.24	230.46	201.9	219.69	325.8	176.38	130.82	267.89	309.8	259.28	114.03
Merged-chr8-126971107-3	chr8	126971003	126971203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-24.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	81.57	78.48	71.31	118.65	97.37	125.74	70.09	101.94	110.34	103.94	136.17	53.57
Merged-chr11-101465157-3	chr11	101465059	101465259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1040.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	27.46	31.44	27.38	27.35	43.77	58.64	56.14	53.75	51.73	43.18	41.2	35.4
Merged-chr17-72836460-3	chr17	72836372	72836572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-156.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	291.94	329.5	328.58	346.29	351.83	451.54	362.73	376.21	430.55	482.52	548.21	289.46
Merged-chr2-11188451-3	chr2	11188344	11188544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	16062.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	40.78	33.96	39.36	28.56	37.23	24.46	27.24	38.1	50.75	41.17	48.74	34.46
Merged-chr7-97356941-3	chr7	97356843	97357043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14674.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	41.19	37.48	50.2	48.26	44.18	53.93	38.86	59.33	43.86	30.13	62.81	30.39
Merged-chr19-57360924-3	chr19	57360804	57361004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	-5.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	136.48	136.58	117.51	157.26	150.55	169.02	142.17	149.27	193.74	197.33	195.47	93.35
Merged-chr11-86544875-3	chr11	86544770	86544970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	-63.0	NM_001114334	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	84.39	80.49	71.88	65.56	84.68	108.18	48.16	51.9	102.47	81.84	75.37	51.69
Merged-chr16-33782123-3	chr16	33782013	33782213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11924.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	31.09	24.65	36.51	16.09	40.09	43.59	24.91	51.28	36.58	38.16	47.74	35.09
Merged-chr2-20969604-3	chr2	20969458	20969658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033225, exon 2 of 2)	non-coding (NR_033225, exon 2 of 2)	684.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	88.03	78.23	77.58	63.95	99.82	172.15	83.71	74.22	125.88	114.98	123.61	50.75
Merged-chr8-123212867-3	chr8	123212768	123212968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	10.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	78.74	68.92	59.33	56.71	69.96	71.18	61.45	58.88	95.0	92.39	94.97	59.83
Merged-chr13-52059934-3	chr13	52059837	52060037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-36804.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	31.09	13.83	54.76	32.18	56.46	51.74	50.16	51.06	41.5	35.65	35.68	26.63
Merged-chr15-38468449-3	chr15	38468343	38468543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22104.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	46.03	35.47	55.33	56.31	38.05	51.11	44.84	58.51	31.47	33.64	67.33	43.86
Merged-chr11-53324658-3	chr11	53324556	53324756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026479)	promoter-TSS (NM_026479)	-33.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	18.17	23.64	31.38	28.56	29.46	31.36	11.29	25.46	34.42	32.64	58.79	26.94
Merged-chr1-165194477-3	chr1	165194359	165194559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-21.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	60.17	38.23	30.23	44.64	61.77	55.82	48.5	49.43	54.48	31.63	52.76	31.33
Merged-chr2-113397893-3	chr2	113397800	113398000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43164.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	43.61	37.73	50.2	62.34	58.09	58.64	39.86	56.41	72.38	62.76	45.22	57.33
Merged-chr3-9027517-3	chr3	9027431	9027631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22808.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	132.04	90.55	131.78	112.21	139.5	173.09	128.55	150.28	100.7	84.35	111.05	66.1
Merged-chr16-14163228-3	chr16	14163136	14163336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023317)	promoter-TSS (NM_023317)	-39.0	NM_023317	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	138.91	150.41	150.03	123.88	108.82	143.3	111.94	154.37	160.5	148.62	204.01	120.92
Merged-chr2-129633497-3	chr2	129633382	129633582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	38020.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	120.73	82.5	165.43	154.04	167.73	154.59	159.77	145.04	144.37	197.33	205.01	124.99
Merged-chr19-33120551-1	chr19	33120451	33120651	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36561.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	6.46	3.02	9.13	3.22	12.68	13.8	14.28	13.18	5.11	2.51	5.53	1.88
Merged-chr14-25614907-3	chr14	25614811	25615011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	11398.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	49.26	39.74	35.37	19.71	35.18	60.83	21.59	20.02	38.55	26.61	35.68	8.46
Merged-chr3-94837418-3	chr3	94837312	94837512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172683)	promoter-TSS (NM_172683)	-155.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	41.59	60.12	54.19	50.27	42.96	53.62	32.88	44.72	78.09	69.29	109.54	52.94
Merged-chr5-130256978-3	chr5	130256893	130257093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001015876)	promoter-TSS (NM_001015876)	-44.0	NR_153350	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	136.89	191.66	147.75	158.06	158.32	212.29	118.92	178.65	186.85	221.93	233.65	146.3
Merged-chr2-167689782-3	chr2	167689680	167689880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	865.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	44.42	35.72	46.78	22.12	60.55	65.22	27.9	32.83	47.99	62.76	64.32	31.33
Merged-chr7-45529699-3	chr7	45529587	45529787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148927, intron 1 of 19)	GA-rich|Low_complexity|Low_complexity	3357.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	28.67	20.37	24.53	18.1	26.18	39.82	15.61	9.62	24.78	27.11	22.11	15.66
Merged-chr2-118562605-3	chr2	118562505	118562705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12919.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	44.82	41.75	51.34	52.69	42.55	57.38	29.9	50.44	43.47	46.7	58.29	42.92
Merged-chr10-43034953-3	chr10	43034847	43035047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-43785.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	82.37	83.51	130.06	112.62	87.14	149.89	112.94	128.33	112.51	114.48	187.43	83.33
Merged-chr10-116581506-9	chr10	116581436	116581636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028082)	promoter-TSS (NM_028082)	-25.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	33.52	25.66	29.66	31.37	59.32	45.47	37.54	35.33	57.24	75.32	64.32	42.92
Merged-chr2-26917053-2	chr2	26916945	26917145	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013677)	promoter-TSS (NM_013677)	-515.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	10.09	3.52	7.99	5.63	13.09	15.68	5.98	12.03	12.78	10.04	20.1	10.96
Merged-chr14-23839844-1	chr14	23839744	23839944	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	164361.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	3.23	2.52	1.14	10.46	2.45	4.7	12.95	14.24	4.13	6.03	12.06	3.45
Merged-chr8-104339414-3	chr8	104339337	104339537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1157.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	21.0	19.62	15.97	27.75	29.86	22.89	41.52	27.2	19.28	25.61	17.59	25.69
Merged-chr12-55389878-3	chr12	55389773	55389973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	5651.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	63.4	54.58	74.16	73.6	96.14	75.26	69.76	89.08	69.82	79.83	92.46	41.35
Merged-chr4-155869501-3	chr4	155869368	155869568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	-28.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	79.95	66.15	82.15	93.31	103.5	89.68	53.81	78.98	118.41	98.41	101.5	63.59
Merged-chr10-69211812-3	chr10	69211719	69211919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-838.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	54.92	28.93	76.44	61.13	56.05	53.93	54.81	65.13	37.76	31.63	95.47	45.42
Merged-chr2-73029929-3	chr2	73029834	73030034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-49488.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	69.86	44.52	88.99	81.65	76.09	81.84	134.53	116.58	101.29	85.36	137.68	70.48
Merged-chr14-78536956-3	chr14	78536878	78537078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-118.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	119.93	110.42	88.99	115.83	126.0	143.62	97.66	117.51	170.53	157.16	174.36	82.39
Merged-chr16-94609391-3	chr16	94609295	94609495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2024.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	36.34	27.42	25.1	28.56	35.18	26.65	25.24	32.02	50.75	47.2	58.79	24.12
Merged-chr2-57181915-3	chr2	57181827	57182027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	96.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	64.61	72.94	48.49	86.07	51.14	58.01	91.01	60.39	69.43	94.4	87.93	50.75
Merged-chr7-45643731-3	chr7	45643643	45643843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172418, intron 7 of 9)	intron (NM_172418, intron 7 of 9)	3766.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	47.24	31.69	37.65	22.52	63.0	76.83	63.11	40.49	78.09	81.84	76.38	46.99
Merged-chr16-16896511-3	chr16	16896412	16896612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	43.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	91.66	111.93	107.82	132.73	144.0	145.18	76.4	110.61	129.62	155.65	196.47	99.31
Merged-chr7-34234165-3	chr7	34234042	34234242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3806.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	86.82	83.51	88.99	84.86	111.69	90.0	93.34	97.18	102.47	107.95	156.27	75.18
Merged-chr2-71390110-3	chr2	71390005	71390205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	845.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	45.63	35.47	38.22	19.71	72.82	86.86	41.19	68.27	84.77	80.84	79.39	61.4
Merged-chr8-39651932-3	chr8	39651846	39652046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-9268.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	70.26	45.78	76.44	82.85	72.0	97.21	73.41	101.27	44.84	33.64	34.17	21.93
Merged-chr19-18630632-3	chr19	18630522	18630722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	1191.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	24.23	15.59	28.52	27.35	26.18	17.87	27.57	38.13	21.05	21.09	32.66	15.66
Merged-chr12-79018108-3	chr12	79018007	79018207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10830.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	25.84	27.42	30.8	18.1	30.68	48.92	21.26	32.24	32.45	38.66	47.23	21.93
Merged-chr18-6773464-3	chr18	6773372	6773572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	8305.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	32.71	53.32	55.33	49.07	29.46	26.34	26.91	26.02	53.3	33.64	40.7	25.37
Merged-chr10-13988384-3	chr10	13988247	13988447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21968.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	66.63	69.67	79.86	82.05	82.64	93.13	64.11	83.27	97.36	96.4	91.95	64.85
Merged-chr13-51651747-3	chr13	51651653	51651853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	45.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	79.55	91.56	82.72	86.47	70.77	102.85	69.09	60.98	108.38	121.01	98.99	78.32
Merged-chr9-72274905-3	chr9	72274800	72275000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311105)	promoter-TSS (NM_001311105)	12.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	50.47	48.54	50.2	50.27	54.41	72.75	35.87	64.96	65.69	60.25	92.96	47.93
Merged-chr6-87533213-3	chr6	87533102	87533302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	57.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	50.88	34.71	55.9	78.83	54.0	49.23	60.12	61.57	46.03	41.67	57.79	46.05
Merged-chr16-50732738-3	chr16	50732650	50732850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028300)	promoter-TSS (NR_028300)	23.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	47.24	46.53	62.18	49.07	76.5	51.74	71.42	93.95	110.34	89.88	159.29	54.82
Merged-chr10-63243752-3	chr10	63243645	63243845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-52.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	184.94	189.4	186.54	242.93	193.92	216.05	229.86	196.32	227.17	220.42	294.45	163.84
Merged-chr15-31530248-3	chr15	31530140	31530340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	797.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	14.13	11.57	22.25	12.87	15.14	18.81	14.95	18.36	20.65	20.59	26.13	9.71
Merged-chr8-10901128-3	chr8	10901012	10901212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102285, intron 2 of 2)	intron (NR_102285, intron 2 of 2)	1190.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	94.49	102.12	96.98	86.07	96.55	90.31	82.05	70.46	113.49	93.39	88.94	44.48
Merged-chr11-49994639-3	chr11	49994528	49994728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30703.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	26.65	12.32	22.25	19.71	15.55	26.97	11.96	25.01	29.7	29.62	36.68	16.92
Merged-chr4-135873945-3	chr4	135873837	135874037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-91.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	66.63	67.41	28.52	31.77	81.82	117.9	51.15	48.65	115.85	99.92	90.95	60.15
Merged-chr12-110695933-2	chr12	110695852	110696052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010480, intron 1 of 10)	CpG	443.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	47.24	42.51	15.97	27.75	36.0	56.44	29.9	35.36	67.07	64.27	62.81	36.34
Merged-chr16-16983902-2	chr16	16983819	16984019	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038663, intron 1 of 7)	CpG	537.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	25.04	15.34	10.84	15.28	17.18	21.32	31.22	14.33	19.67	21.59	26.63	21.3
Merged-chr15-73185351-3	chr15	73185209	73185409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153178)	promoter-TSS (NM_153178)	-362.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	39.57	42.26	42.78	42.23	54.82	56.44	34.88	45.31	46.42	62.26	58.29	36.97
Merged-chr10-33951298-3	chr10	33951248	33951448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-89.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	70.66	63.89	72.45	71.59	57.68	101.28	50.82	73.37	97.16	86.36	106.02	58.58
Merged-chr2-109917584-3	chr2	109917475	109917675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-72.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	110.24	118.97	152.31	149.62	181.23	160.55	145.16	243.95	191.77	115.48	246.72	94.92
Merged-chr14-32085540-4	chr14	32085381	32085581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104305)	promoter-TSS (NR_104305)	-195.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	52.9	65.9	43.35	65.16	57.27	51.11	64.44	41.27	70.02	97.91	89.44	65.47
Merged-chr16-34304081-1	chr16	34303981	34304181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	209946.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	21.0	18.36	9.13	3.22	2.86	7.53	1.99	2.38	13.37	4.52	12.56	7.52
Merged-chr4-133631182-3	chr4	133631078	133631278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	2251.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	22.61	17.1	27.38	23.73	34.36	34.81	32.55	37.07	29.11	17.57	30.65	16.92
Merged-chr9-25485701-3	chr9	25485597	25485797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4100.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	63.4	57.1	60.47	65.16	81.41	90.31	69.09	103.26	96.57	94.4	128.64	70.48
Merged-chr8-25754416-3	chr8	25754305	25754505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	8.0	NM_001361595	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	70.66	58.1	38.22	51.88	123.55	85.61	62.45	77.66	83.59	97.41	90.45	42.92
Merged-chr4-132488751-2	chr4	132488662	132488862	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21694.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	14.13	9.31	1.71	7.24	20.86	30.73	32.55	31.96	36.58	19.58	35.68	17.23
Merged-chr3-98013444-3	chr3	98013321	98013521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-117.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	73.89	74.2	66.74	73.6	63.0	90.94	73.08	50.94	105.42	105.44	88.44	58.58
Merged-chr3-7366462-1	chr3	7366362	7366562	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-142.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	1.62	3.52	0.0	3.22	19.64	19.76	33.88	28.09	0.98	1.51	3.01	0.31
Merged-chr6-134425650-3	chr6	134425545	134425745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	11217.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	44.42	30.43	40.5	41.83	78.14	66.48	45.51	85.93	56.25	57.24	124.62	43.23
Merged-chr4-32353039-3	chr4	32352934	32353134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64401.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	29.48	17.36	37.65	30.16	39.68	32.61	45.84	64.68	16.52	21.09	31.66	15.98
Merged-chr5-115119280-3	chr5	115119152	115119352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007383)	promoter-TSS (NM_007383)	94.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	44.01	50.31	48.49	43.44	32.32	37.32	41.85	31.68	41.3	33.64	36.18	38.85
Merged-chr2-59612001-3	chr2	59611920	59612120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198294)	promoter-TSS (NM_198294)	-22.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	23.42	24.15	20.54	20.11	40.09	26.03	20.59	36.73	24.0	26.11	28.64	17.54
Merged-chr5-137502557-3	chr5	137502451	137502651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-122.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	114.68	118.97	126.07	86.88	99.41	129.51	49.16	65.78	112.31	142.6	130.14	81.76
Merged-chr12-76527768-3	chr12	76527680	76527880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5432.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	65.41	68.92	82.15	67.17	57.68	72.44	43.51	75.93	85.36	79.33	76.38	53.26
Merged-chr1-183320937-3	chr1	183320842	183321042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181732, intron 8 of 9)	intron (NM_181732, intron 8 of 9)	-23649.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	24.63	23.14	22.82	16.09	32.73	37.63	27.57	27.03	28.13	40.67	28.64	19.11
Merged-chr16-4839818-3	chr16	4839713	4839913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	4397.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	60.17	41.75	43.93	76.82	84.28	41.39	66.43	107.69	64.51	51.72	99.49	58.27
Merged-chr4-129058082-3	chr4	129057985	129058185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029219)	promoter-TSS (NM_029219)	-186.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	140.52	150.92	116.37	96.13	120.28	188.14	69.42	92.3	153.02	167.7	126.63	86.46
Merged-chr2-16491536-3	chr2	16491425	16491625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	135221.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	62.59	53.32	54.19	78.03	88.78	79.65	89.35	78.39	69.63	60.25	103.51	50.75
Merged-chr18-10609637-2	chr18	10609535	10609735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081222, intron 1 of 10)	CpG	717.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	6.86	12.32	16.54	14.88	12.68	15.99	19.27	14.58	18.69	27.11	24.62	10.65
Merged-chrX-142683563-3	chrX	142683478	142683678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	1852.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	33.92	36.97	34.8	29.76	36.41	55.5	34.21	41.16	43.07	37.66	42.21	25.37
Merged-chr1-65113002-3	chr1	65112914	65113114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9651.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	41.19	33.96	61.04	48.26	76.5	81.84	70.75	103.15	109.95	82.85	116.07	73.3
Merged-chr16-94526593-3	chr16	94526479	94526679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	50.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	133.66	112.18	67.31	90.9	129.69	165.25	99.98	92.41	204.95	247.54	235.16	109.02
Merged-chr15-81859567-1	chr15	81859467	81859667	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-1241.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	25.84	14.84	14.26	16.89	20.46	21.64	28.23	10.07	58.61	38.16	67.33	39.47
Merged-chr5-30961060-1	chr5	30960960	30961160	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-733.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	12.52	14.09	6.85	12.87	8.18	14.42	5.31	8.21	18.88	16.07	27.13	11.9
Merged-chr12-102453718-3	chr12	102453613	102453813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13900.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	88.84	92.31	89.56	112.62	129.69	128.56	87.36	127.26	161.48	138.58	162.3	120.29
Merged-chr1-151686903-3	chr1	151686812	151687012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	67815.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	93.28	114.19	118.08	88.08	85.5	119.47	58.79	86.22	80.64	81.34	75.37	47.93
Merged-chr1-160906849-1	chr1	160906749	160906949	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024952, intron 1 of 19)	CpG	438.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	17.77	11.82	5.13	11.26	22.91	23.2	29.23	16.07	23.01	27.62	42.71	32.27
Merged-chr4-149738113-3	chr4	149738021	149738221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177672)	promoter-TSS (NM_177672)	-53.0	NM_177672	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	74.3	62.38	88.99	75.61	94.5	107.87	41.52	78.17	123.72	116.99	126.63	63.91
Merged-chr14-30625138-3	chr14	30625013	30625213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1095.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	22.21	29.93	14.83	23.73	31.09	36.69	29.9	33.36	34.22	24.6	33.67	16.92
Merged-chr14-63080360-3	chr14	63080258	63080458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25285.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	129.62	126.52	148.89	170.13	143.19	154.28	150.81	142.63	149.09	124.52	191.95	110.9
Merged-chr5-147860566-3	chr5	147860463	147860663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025624)	promoter-TSS (NM_025624)	-65.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	31.5	41.75	49.63	42.63	40.5	36.69	38.86	49.35	46.81	58.75	66.33	36.65
Merged-chr18-58660037-3	chr18	58659939	58660139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	557.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	31.09	35.97	31.38	24.13	23.32	32.61	30.56	34.77	36.58	40.17	43.72	21.3
Merged-chr2-27071345-3	chr2	27071247	27071447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025376, intron 1 of 4)	intron (NM_025376, intron 1 of 4)	814.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	40.38	23.39	54.19	42.63	33.14	23.52	29.23	38.55	37.17	25.11	57.28	21.93
Merged-chr16-20651664-3	chr16	20651594	20651794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027485)	promoter-TSS (NR_027485)	42.0	NM_134101	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	46.84	35.72	63.89	32.98	49.09	50.17	27.57	51.53	74.15	49.71	70.35	39.16
Merged-chr19-41981379-3	chr19	41981259	41981459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-223.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	186.96	197.45	168.28	159.67	204.55	237.06	188.67	155.58	272.61	308.79	312.54	185.14
Merged-chr17-47394410-3	chr17	47394312	47394512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008189)	TTS (NM_008189)	6194.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	26.25	18.11	17.11	20.91	23.32	25.4	16.61	26.69	27.54	25.61	53.77	18.8
Merged-chr10-63240980-3	chr10	63240877	63241077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-2820.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	39.98	42.26	45.64	11.26	43.77	43.27	18.6	15.25	77.3	52.22	81.9	22.24
Merged-chr16-11176406-3	chr16	11176285	11176485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145931)	promoter-TSS (NM_145931)	8.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	162.73	146.64	180.26	162.89	142.78	167.13	119.25	140.44	188.62	200.34	239.68	109.02
Merged-chr3-106788513-3	chr3	106788401	106788601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1648.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	6.46	7.55	21.68	22.52	16.77	23.52	8.64	22.74	21.24	18.08	22.61	18.17
Merged-chr7-24601133-3	chr7	24601041	24601241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023154, intron 4 of 7)	intron (NM_023154, intron 4 of 7)	-10187.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	24.23	16.6	19.4	19.31	34.77	29.48	15.94	26.41	25.96	22.09	38.69	16.29
Merged-chr2-58160162-3	chr2	58160064	58160264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139200)	promoter-TSS (NM_139200)	-42.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	41.19	28.17	46.78	37.81	69.14	47.98	47.5	93.48	90.67	79.33	133.66	42.92
Merged-chr11-75654142-3	chr11	75654048	75654248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1867.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	140.92	140.1	123.79	117.84	154.64	153.65	99.65	111.67	122.93	159.17	133.16	71.42
Merged-chr1-91293904-2	chr1	91293805	91294005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4433.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	83.59	84.76	85.57	58.72	56.05	49.86	24.58	48.53	1.38	3.51	3.52	4.07
Merged-chr18-6104675-3	chr18	6104571	6104771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039692, intron 3 of 18)	L1MDa|LINE|L1	31427.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	20.19	22.13	33.09	17.29	29.46	26.03	20.59	37.18	39.34	41.17	26.13	20.36
Merged-chr14-73138752-3	chr14	73138647	73138847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3763.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	63.8	59.36	50.2	52.69	93.68	94.07	57.8	84.2	97.75	98.91	101.5	54.82
Merged-chrUn_JH584304-38637-1	chrUn_JH584304	38537	38737	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	21052.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	67.27	91.38	105.52	62.03
Merged-chr1-171845657-3	chr1	171845547	171845747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5950.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	28.67	22.64	38.22	17.29	67.09	47.66	29.56	46.37	24.39	20.08	19.09	18.17
Merged-chr7-132610656-3	chr7	132610563	132610763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029609)	promoter-TSS (NM_029609)	20.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	41.99	56.85	53.62	51.48	52.37	99.09	75.73	54.81	66.68	87.87	78.89	43.86
Merged-chr2-37452173-3	chr2	37452072	37452272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-82.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	122.75	113.44	120.37	160.48	156.28	161.49	116.59	167.47	191.18	156.15	274.36	117.47
Merged-chr10-94576097-3	chr10	94576005	94576205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177026)	promoter-TSS (NM_177026)	-158.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	181.3	176.07	229.89	200.3	235.23	243.96	223.22	268.99	219.31	237.5	355.26	152.56
Merged-chr1-74588212-3	chr1	74588103	74588303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310668)	promoter-TSS (NM_001310668)	-86.0	NM_001305652	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	99.74	105.39	106.68	129.51	114.96	154.59	109.62	151.54	144.17	130.55	203.51	71.11
Merged-chr5-135149137-2	chr5	135149037	135149237	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-574.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	134.46	129.79	99.83	115.43	138.28	180.62	77.73	108.65	164.63	182.26	190.44	99.62
Merged-chr1-180811819-3	chr1	180811723	180811923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008210, exon 2 of 4)	exon (NM_008210, exon 2 of 4)	1782.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	32.71	39.49	29.66	23.73	16.36	21.32	19.93	13.07	38.75	40.67	32.66	27.57
Merged-chr3-131564687-3	chr3	131564602	131564802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-66.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	302.85	351.64	365.09	440.41	425.06	452.8	505.9	432.67	484.25	497.59	719.56	309.19
Merged-chr8-123859416-4	chr8	123859221	123859421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028536, exon 2 of 4)	exon (NM_028536, exon 2 of 4)	888.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	26.25	26.16	21.68	24.94	18.82	16.62	29.56	21.45	16.13	23.6	35.17	20.36
Merged-chr7-81859055-3	chr7	81858931	81859131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145375)	promoter-TSS (NM_145375)	30.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	13.33	13.08	22.82	29.36	38.05	23.52	21.59	20.16	24.39	29.62	34.17	20.05
Merged-chr11-102284826-3	chr11	102284710	102284910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-10.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	96.91	104.13	103.25	89.29	110.05	155.85	59.46	58.93	133.55	127.53	110.55	85.21
Merged-chr13-95679966-2	chr13	95679863	95680063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-16957.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	59.76	55.34	69.03	54.3	49.5	101.91	66.77	66.31	0.79	0.0	0.0	1.25
Merged-chr2-104507257-3	chr2	104507155	104507355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12766.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	17.36	12.83	26.81	20.51	20.86	17.87	10.96	18.64	16.72	13.56	21.1	25.06
Merged-chr6-38433793-3	chr6	38433695	38433895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	-130.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	159.9	171.04	159.16	159.27	185.32	231.42	139.18	192.87	226.58	225.95	217.57	130.95
Merged-chr10-93539951-3	chr10	93539868	93540068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027908)	promoter-TSS (NM_027908)	65.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	65.41	57.85	32.52	56.31	58.09	85.61	59.13	83.41	90.28	89.88	117.08	46.36
Merged-chr16-33770034-3	chr16	33769945	33770145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23992.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	26.25	25.4	46.21	49.47	38.05	54.88	32.22	47.75	43.86	55.23	76.38	34.77
Merged-chr5-88631079-3	chr5	88630963	88631163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	44517.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	191.4	208.01	189.39	249.77	258.14	275.94	244.15	269.19	291.69	285.7	380.88	171.36
Merged-chr12-100026871-3	chr12	100026779	100026979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	62380.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	17.77	13.08	23.96	18.5	27.41	32.93	33.55	49.79	39.73	44.19	56.28	29.76
Merged-chr5-136151745-3	chr5	136151640	136151840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178751, intron 2 of 2)	intron (NM_178751, intron 2 of 2)	12959.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	27.86	37.73	44.5	29.76	22.91	52.05	28.9	29.89	23.6	31.13	34.17	21.3
Merged-chr9-96196277-3	chr9	96196174	96196374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-1.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	134.46	108.16	111.81	112.21	150.55	121.67	104.3	167.05	156.17	130.05	225.61	99.31
Merged-chr5-74068433-4	chr5	74068335	74068535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177561)	promoter-TSS (NM_177561)	-24.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	26.65	12.83	24.53	17.29	52.77	48.92	23.58	39.39	40.52	47.7	93.46	29.76
Merged-chr10-80017036-1	chr10	80016936	80017136	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001347074, exon 1 of 23)	exon (NM_001347074, exon 1 of 23)	121.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	10.9	6.04	13.69	5.23	15.96	12.23	3.99	5.75	8.65	18.58	9.55	8.46
Merged-chr14-47373908-3	chr14	47373797	47373997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	37.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	21.4	14.59	19.4	31.77	37.23	43.27	30.89	37.6	35.21	44.19	43.72	25.06
Merged-chr16-24629433-3	chr16	24629367	24629567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-92388.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	120.33	119.73	102.68	100.15	133.37	149.89	88.69	92.1	134.73	130.55	148.73	69.86
Merged-chr18-34409410-3	chr18	34409308	34409508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163004)	promoter-TSS (NM_001163004)	-15.0	NM_001163004	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	51.69	31.19	37.65	32.58	69.14	55.19	21.92	51.59	46.81	39.67	57.79	35.71
Merged-chr1-74248998-3	chr1	74248935	74249135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	12518.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	121.14	122.49	176.84	154.04	151.37	146.75	121.57	166.04	126.67	129.54	191.45	98.05
Merged-chr2-145808520-3	chr2	145808406	145808606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	22390.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	30.69	26.41	54.19	71.19	55.23	74.94	101.98	92.16	53.5	63.77	68.34	44.17
Merged-chrX-68678557-3	chrX	68678444	68678644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290424)	promoter-TSS (NM_001290424)	3.0	NM_001290424	14265.0	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	73.49	60.87	94.7	78.43	87.14	98.46	70.42	103.99	104.64	115.48	141.2	54.51
Merged-chr10-99169974-3	chr10	99169881	99170081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61846.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	96.91	61.37	98.12	106.18	114.14	90.31	70.42	104.78	72.58	76.32	111.05	43.23
Merged-chr6-115375514-3	chr6	115375409	115375609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	13160.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	35.94	26.91	23.96	32.58	32.32	24.15	27.9	33.76	41.3	30.63	37.69	27.88
Merged-chr16-11008400-3	chr16	11008287	11008487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040518)	promoter-TSS (NR_040518)	-511.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	92.87	51.81	102.68	106.18	100.23	92.19	135.53	87.25	120.77	82.35	153.26	74.56
Merged-chr9-114844489-3	chr9	114844338	114844538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-286.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	56.94	31.19	54.19	56.31	54.0	38.57	29.56	45.7	23.6	29.62	27.64	27.25
Merged-chr16-49970679-3	chr16	49970577	49970777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9783.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	43.61	34.71	30.8	29.36	56.46	42.96	46.17	40.12	59.99	61.26	77.88	31.64
Merged-chr13-49190205-3	chr13	49190102	49190302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	2655.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	69.45	55.08	90.7	50.68	94.91	114.45	127.89	138.42	119.78	112.97	170.34	75.81
Merged-chr13-113601312-3	chr13	113601229	113601429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17235.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	37.15	44.52	43.35	41.02	160.37	173.09	130.21	119.16	103.06	131.55	136.68	58.27
Merged-chr14-45329715-3	chr14	45329618	45329818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025959)	promoter-TSS (NM_025959)	-106.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	153.04	170.54	189.39	192.65	199.64	239.26	156.78	205.6	185.48	212.39	236.17	108.08
Merged-chr19-41339385-3	chr19	41339313	41339513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	45657.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	102.16	56.09	114.09	87.28	99.0	102.22	107.62	144.25	97.36	69.79	114.57	77.38
Merged-chr17-33910148-3	chr17	33910061	33910261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	560.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	52.09	78.48	50.77	39.82	41.73	45.15	31.89	33.34	63.53	54.73	49.75	44.48
Merged-chr17-88529009-3	chr17	88528920	88529120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-1104.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	32.71	14.09	25.1	26.95	44.18	27.28	23.58	32.58	45.83	31.13	32.16	20.36
Merged-chr2-148752473-3	chr2	148752372	148752572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	2111.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	27.05	14.09	37.65	25.74	24.55	27.28	17.61	23.44	34.62	36.65	43.72	31.01
Merged-chr11-102189605-3	chr11	102189495	102189695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-104.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	73.49	42.01	52.48	72.4	64.23	72.12	36.54	51.45	66.09	69.29	69.34	42.6
Merged-chr1-162574292-3	chr1	162574186	162574386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	3458.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	25.44	30.43	37.65	49.47	81.41	115.71	71.42	59.13	75.92	93.89	83.91	29.76
Merged-chr5-137825263-3	chr5	137825157	137825357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	11021.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	38.76	33.96	50.77	34.99	43.36	52.05	26.91	46.88	50.16	50.21	38.69	27.88
Merged-chr7-39449451-3	chr7	39449368	39449568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-50.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	96.1	86.27	81.58	94.11	112.5	139.23	120.25	185.02	159.71	175.23	217.07	111.21
Merged-chr13-58448207-3	chr13	58448097	58448297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44854.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	43.21	21.63	29.09	63.15	36.82	20.7	59.79	47.58	43.86	38.16	75.87	41.35
Merged-chr5-127617456-3	chr5	127617359	127617559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	-67.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	78.74	83.51	92.41	87.68	97.78	107.24	77.06	91.74	132.96	123.02	153.76	74.56
Merged-chr10-62450105-3	chr10	62450028	62450228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-390.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	31.9	31.44	27.95	33.78	47.46	50.49	52.15	41.44	62.35	30.63	45.22	27.57
Merged-chr12-102417859-3	chr12	102417774	102417974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	21939.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	29.48	15.85	23.96	14.08	35.59	38.26	11.63	31.46	31.47	30.13	27.64	20.68
Merged-chr19-5803227-1	chr19	5803127	5803327	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-555.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	36.34	38.23	17.68	26.14	31.5	32.61	38.53	21.39	41.11	38.16	32.16	36.03
Merged-chr17-46153568-3	chr17	46153480	46153680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-29.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	41.19	23.64	28.52	35.8	42.55	40.14	34.21	36.42	51.34	40.17	66.83	20.36
Merged-chr13-73434221-3	chr13	73434125	73434325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33158.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	25.04	19.62	29.66	30.16	27.82	20.7	26.91	37.21	21.64	17.57	29.14	28.82
Merged-chr8-85840793-3	chr8	85840711	85840911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199446)	promoter-TSS (NM_199446)	138.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	33.52	46.03	45.07	34.59	22.91	35.43	33.22	34.21	46.03	44.69	37.69	31.64
Merged-chr4-141646212-3	chr4	141646095	141646295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17920.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	37.15	36.97	27.38	45.05	35.18	30.42	25.24	29.41	49.17	38.66	56.28	27.57
Merged-chr13-76098688-3	chr13	76098596	76098796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	-36.0	NM_029847	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	117.91	155.7	171.71	173.35	164.87	177.17	143.5	185.27	190.98	175.23	209.03	140.34
Merged-chr16-17070156-3	chr16	17070071	17070271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291053)	promoter-TSS (NM_001291053)	32.0	NM_001291047	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	44.42	25.15	26.24	37.0	41.73	37.0	27.24	47.02	27.34	32.13	36.18	18.17
Merged-chr7-63905338-3	chr7	63905250	63905450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-11507.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	118.72	113.44	92.98	55.5	155.05	147.69	82.05	95.3	125.49	144.61	154.26	58.58
Merged-chr11-120484621-3	chr11	120484532	120484732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-5.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	43.21	38.23	33.09	45.85	51.55	63.66	24.58	36.87	76.51	63.27	85.42	35.09
Merged-chr2-144290526-3	chr2	144290429	144290629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	19625.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	73.49	61.88	83.86	65.56	71.59	78.08	59.13	90.53	103.26	95.9	140.7	57.95
Merged-chr10-56598409-3	chr10	56598302	56598502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166421.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	27.05	29.43	35.37	35.39	48.27	43.27	36.21	84.53	28.72	41.67	48.24	28.82
Merged-chr5-100614260-3	chr5	100614169	100614369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42064.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	69.45	61.37	64.46	52.69	79.78	102.85	47.83	49.46	95.59	99.42	102.51	35.4
Merged-chr15-35559266-3	chr15	35559177	35559377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 19 of 61)	intron (NM_177151, intron 19 of 61)	101641.0	NR_035527	100316736.0		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	15.34	18.86	17.68	28.15	20.86	23.52	23.25	46.12	28.52	26.61	36.18	30.07
Merged-chr10-81606219-3	chr10	81606115	81606315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-93.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	153.85	162.99	131.78	172.95	188.19	228.91	133.2	177.59	155.19	168.71	225.11	106.2
Merged-chr17-31520054-3	chr17	31519953	31520153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-62.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	181.3	162.24	209.36	174.96	227.05	207.9	175.39	160.82	179.97	203.85	290.94	126.56
Merged-chr17-47275847-3	chr17	47275763	47275963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	45633.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	54.51	43.01	45.07	48.26	51.55	66.48	48.83	57.36	82.02	53.73	102.51	55.45
Merged-chr12-70477743-3	chr12	70477631	70477831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	LTR16E2|LTR|ERVL	24577.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	34.73	41.0	25.1	40.22	28.23	52.68	30.56	39.25	69.43	64.27	91.45	36.65
Merged-chr2-91206460-3	chr2	91206355	91206555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357067, intron 6 of 10)	intron (NM_001357067, intron 6 of 10)	3543.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	120.33	112.43	120.94	101.35	126.41	178.74	84.37	108.53	151.06	142.1	155.77	86.15
Merged-chr10-45048827-3	chr10	45048738	45048938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18376.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	42.4	20.63	38.22	28.15	56.05	50.49	40.86	67.26	36.98	39.16	67.33	29.76
Merged-chr2-181288124-3	chr2	181288041	181288241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-175.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	113.47	93.82	88.42	88.08	112.5	121.35	55.47	91.93	160.69	156.66	155.77	100.87
Merged-chr8-35567479-3	chr8	35567388	35567588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20310.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	43.21	40.24	75.87	64.35	91.64	84.35	85.7	115.82	32.26	37.16	42.21	26.0
Merged-chr1-180330408-3	chr1	180330308	180330508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081175)	promoter-TSS (NM_001081175)	-68.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	69.86	68.42	91.84	63.55	69.96	74.94	42.52	66.73	68.84	89.37	73.86	47.93
Merged-chr16-38742278-3	chr16	38742170	38742370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	11.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	26.65	30.43	36.51	36.6	33.96	31.98	23.92	37.23	29.7	27.62	38.19	18.8
Merged-chr8-105471498-3	chr8	105471417	105471617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	-95.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	120.33	118.47	139.76	155.65	127.64	167.45	145.82	178.54	176.43	172.22	261.79	115.6
Merged-chr3-117868915-3	chr3	117868775	117868975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	61.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	64.61	94.83	82.72	73.2	110.87	94.39	97.33	126.53	96.77	81.84	134.16	56.7
Merged-chr6-72345187-3	chr6	72345089	72345289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-14.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	39.17	52.32	41.64	53.09	42.55	49.54	21.59	39.31	51.53	55.23	56.78	26.0
Merged-chr4-136285494-3	chr4	136285398	136285598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-569.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	46.44	41.75	47.35	48.26	52.37	47.35	27.24	41.07	84.18	52.22	96.98	42.6
Merged-chr7-24531793-2	chr7	24531682	24531882	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	1134.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	15.34	16.85	4.56	6.84	8.59	12.54	7.97	9.2	15.54	10.04	21.61	10.96
Merged-chr6-39241777-3	chr6	39241651	39241851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34978.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	21.0	23.9	40.5	30.16	30.68	20.7	25.91	53.38	37.37	23.6	33.67	37.28
Merged-chr2-160044731-3	chr2	160044638	160044838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	28085.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	37.96	40.24	71.31	37.4	67.5	86.55	45.51	56.64	50.94	54.23	57.79	23.49
Merged-chr13-43786470-3	chr13	43786366	43786566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	1354.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	81.16	102.12	54.76	50.27	66.27	98.46	58.13	70.04	86.15	93.39	89.94	52.94
Merged-chr1-152902857-3	chr1	152902762	152902962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-216.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	114.68	109.67	83.86	75.61	91.23	127.31	60.46	71.27	116.44	125.53	125.12	88.34
Merged-chr3-89913205-3	chr3	89913109	89913309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-13.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	86.01	83.76	86.14	75.21	91.23	106.3	72.75	81.73	98.54	126.03	129.14	67.04
Merged-chr9-107644746-3	chr9	107644651	107644851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9409.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	21.4	23.64	28.52	30.57	22.5	38.57	8.64	27.42	41.7	31.63	49.75	26.63
Merged-chr10-96377723-3	chr10	96377631	96377831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151524.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	68.24	65.4	114.09	74.41	63.0	94.7	86.7	87.45	70.41	54.73	100.5	54.2
Merged-chr11-6520941-3	chr11	6520810	6521010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178440)	promoter-TSS (NM_178440)	48.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	33.11	23.39	25.1	19.31	39.68	30.42	29.23	29.94	21.05	21.59	45.22	21.62
Merged-chr12-110889183-3	chr12	110889072	110889272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	-27.0	NM_026048	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	104.99	102.62	87.85	78.83	103.91	129.51	50.16	85.51	106.21	113.48	127.13	60.15
Merged-chr7-98816227-3	chr7	98816144	98816344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-18868.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	49.26	44.77	37.65	39.01	69.14	45.47	56.47	61.04	70.22	64.77	72.86	45.11
Merged-chr2-148732467-3	chr2	148732388	148732588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-68.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	33.92	34.21	34.23	58.32	63.41	55.82	56.8	81.79	48.58	33.64	80.9	41.35
Merged-chr1-52801844-3	chr1	52801698	52801898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	15890.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	47.24	43.01	46.78	44.24	44.59	27.91	44.51	42.06	69.04	48.7	71.86	44.17
Merged-chr2-112239572-5	chr2	112239465	112239665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-276.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	30.28	20.12	31.95	32.98	43.77	30.1	32.88	29.33	31.47	54.23	41.71	35.71
Merged-chr16-38394381-3	chr16	38394274	38394474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32184.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	51.28	44.77	87.28	47.46	152.19	163.06	183.69	143.66	128.44	145.11	178.88	76.75
Merged-chr9-119983213-3	chr9	119983109	119983309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-186.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	73.89	105.64	42.78	48.67	77.32	129.19	39.53	42.31	113.1	139.59	85.92	59.52
Merged-chr1-9876997-3	chr1	9876906	9877106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133220, intron 6 of 17)	intron (NM_133220, intron 6 of 17)	28725.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	104.58	91.3	151.17	133.13	100.64	117.59	98.99	150.25	120.18	117.99	129.14	67.35
Merged-chr7-30626155-3	chr7	30626048	30626248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	3.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	61.38	28.17	33.66	39.42	56.87	50.49	25.24	44.02	48.78	37.16	77.88	32.89
Merged-chr7-4501009-3	chr7	4500920	4501120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	660.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	82.37	59.11	62.18	57.51	57.27	80.9	64.44	67.71	80.64	56.24	93.96	43.54
Merged-chr8-71286482-3	chr8	71286390	71286590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	13776.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	63.8	52.32	54.19	52.69	103.5	95.01	85.37	52.46	64.12	74.81	67.84	49.81
Merged-chr17-71475455-3	chr17	71475348	71475548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-105.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	195.44	221.34	218.48	201.1	233.19	197.24	166.75	195.11	264.15	286.2	344.7	160.71
Merged-chr6-97461909-3	chr6	97461811	97462011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2625.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	105.79	102.12	92.41	57.51	112.5	192.22	129.88	91.21	148.5	157.66	161.3	59.21
Merged-chr4-116994461-3	chr4	116994358	116994558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-45.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	50.47	44.77	38.79	55.1	44.18	67.42	19.6	44.16	94.02	68.79	107.03	63.59
Merged-chr2-27762720-3	chr2	27762625	27762825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	52142.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	121.54	79.99	120.94	107.39	134.19	141.42	144.16	131.61	131.98	133.06	206.02	82.39
Merged-chr1-105925841-3	chr1	105925703	105925903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64479.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	16.15	17.61	50.77	46.66	29.46	35.43	91.01	79.79	36.58	23.1	44.72	26.31
Merged-chr6-97431723-3	chr6	97431619	97431819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	27567.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	112.66	104.64	144.33	139.16	120.69	152.4	153.46	143.83	117.62	110.97	127.13	88.97
Merged-chr1-91041802-3	chr1	91041706	91041906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-11638.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	109.43	111.68	202.51	117.44	146.46	153.65	136.19	176.36	148.7	164.19	234.16	115.6
Merged-chr4-45342547-1	chr4	45342447	45342647	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153167, exon 1 of 7)	exon (NM_153167, exon 1 of 7)	446.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	18.17	23.39	17.68	23.73	15.14	19.44	35.21	16.68	23.41	29.12	36.18	21.62
Merged-chr9-124425712-3	chr9	124425614	124425814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027950)	TTS (NR_027950)	1927.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	127.2	115.7	149.46	100.15	96.55	130.45	80.05	107.1	190.2	161.68	157.28	94.29
Merged-chr18-67205373-3	chr18	67205280	67205480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024190)	promoter-TSS (NM_024190)	21.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	71.47	74.2	75.3	57.51	72.0	79.65	35.87	62.16	135.32	132.56	130.65	82.08
Merged-chr15-6562524-3	chr15	6562399	6562599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17348.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	69.45	65.65	68.45	70.79	89.59	105.36	87.03	101.8	89.3	71.3	69.34	48.56
Merged-chr19-53313321-3	chr19	53313179	53313379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	CpG	1834.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	31.5	39.24	28.52	22.93	33.96	48.6	33.88	32.83	57.04	45.69	67.84	38.53
Merged-chr10-10468862-3	chr10	10468761	10468961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	3453.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	23.02	12.83	16.54	26.95	28.23	23.52	20.93	37.49	63.73	48.2	72.36	29.45
Merged-chr10-79985034-3	chr10	79984923	79985123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-763.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	99.33	88.79	116.94	97.73	121.5	120.73	69.42	98.94	152.24	165.19	200.49	99.31
Merged-chr4-95850383-5	chr4	95850315	95850515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	116620.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	14.94	28.67	18.25	22.93	26.18	17.87	32.22	21.87	31.86	33.64	46.23	24.75
Merged-chr14-54749507-3	chr14	54749427	54749627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	32359.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	16.56	13.33	6.85	24.13	23.32	15.99	23.58	35.8	16.33	19.08	33.16	17.86
Merged-chr7-28379248-4	chr7	28379130	28379330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011756)	promoter-TSS (NM_011756)	-2.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	165.96	225.37	203.65	202.31	171.82	264.66	160.77	155.3	202.79	251.55	322.09	125.31
Merged-chr5-115282647-3	chr5	115282542	115282742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026504, intron 1 of 6)	intron (NM_026504, intron 1 of 6)	2940.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	126.79	91.05	151.17	116.64	114.14	151.46	109.28	144.59	108.38	87.37	91.45	67.04
Merged-chr4-156198064-3	chr4	156197984	156198184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-596.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	123.56	88.03	114.66	71.59	96.96	153.34	62.78	111.08	149.68	143.6	221.59	68.29
Merged-chr2-142903058-3	chr2	142902952	142903152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131921)	promoter-TSS (NR_131921)	87.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	142.14	111.18	134.06	152.84	123.96	118.84	129.21	167.22	157.74	135.07	210.54	99.62
Merged-chr9-50554844-3	chr9	50554738	50554938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357222, exon 1 of 6)	5' UTR (NM_001357222, exon 1 of 6)	138.0	NM_001357222	16173.0	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	49.67	38.74	36.51	34.59	38.46	58.32	34.21	34.09	49.96	56.74	78.39	19.74
Merged-chr4-32358820-3	chr4	32358720	32358920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58615.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	88.03	50.56	124.93	119.05	58.09	96.89	90.35	140.97	60.38	44.19	82.91	46.99
Merged-chr1-93804226-1	chr1	93804126	93804326	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025454, intron 1 of 7)	CpG	261.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	76.32	53.58	44.5	44.24	55.23	113.51	43.51	63.17	118.41	110.97	152.25	63.28
Merged-chr7-141024934-3	chr7	141024829	141025029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8037.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	29.48	20.63	50.2	50.27	38.05	36.06	32.22	37.21	44.84	23.1	55.27	28.51
Merged-chr5-114130839-3	chr5	114130729	114130929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-327.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	58.55	36.22	54.76	30.16	52.37	51.43	31.22	48.73	79.46	83.85	67.84	49.18
Merged-chr9-47736243-3	chr9	47736129	47736329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	81979.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	52.9	38.48	54.19	41.02	41.32	62.4	29.56	40.68	77.69	68.79	67.84	46.36
Merged-chr11-79870623-3	chr11	79870495	79870695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91792.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	26.25	30.94	43.35	33.78	38.46	46.41	57.8	44.5	46.03	42.68	39.7	30.07
Merged-chr14-30908139-3	chr14	30908046	30908246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008407)	TTS (NM_008407)	15441.0	NM_008407	16426.0	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	29.48	29.18	39.36	28.56	41.32	43.9	30.56	50.5	75.92	53.22	79.89	43.54
Merged-chr1-172501874-3	chr1	172501764	172501964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	1618.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	31.9	23.64	23.96	46.25	42.55	48.6	26.91	24.93	59.99	75.82	60.3	32.89
Merged-chr17-24351969-3	chr17	24351879	24352079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-44.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	113.06	89.04	94.7	115.03	117.82	157.1	53.15	111.25	109.95	123.02	105.02	78.63
Merged-chrX-107178958-1	chrX	107178858	107179058	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29343.0	NM_175442	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	4.85	6.29	6.85	3.22	18.41	12.23	16.94	15.45	2.56	7.53	13.06	4.39
Merged-chr8-111876777-3	chr8	111876646	111876846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-71.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	137.29	108.91	172.28	122.67	155.87	179.05	136.19	189.81	186.46	181.26	248.23	131.26
Merged-chr1-131679838-3	chr1	131679732	131679932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8863.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	96.91	67.91	47.92	66.77	96.55	67.42	48.5	72.9	91.46	93.39	102.51	71.74
Merged-chr8-94179058-3	chr8	94178954	94179154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-35.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	255.6	284.73	279.52	296.42	285.96	350.89	278.03	308.13	326.7	338.92	415.55	211.45
Merged-chr4-116672966-3	chr4	116672867	116673067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12632.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	60.97	52.57	66.74	57.11	63.82	82.16	50.49	91.57	98.34	84.35	120.6	60.77
Merged-chr4-43478352-3	chr4	43478245	43478445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5364.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	25.04	30.18	34.23	31.37	36.82	43.59	17.27	36.5	69.63	42.18	79.89	46.68
Merged-chr7-28825204-3	chr7	28825096	28825296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016772)	promoter-TSS (NM_016772)	-142.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	71.47	58.61	74.16	68.37	73.64	57.07	58.13	73.32	67.46	71.8	87.93	53.57
Merged-chr5-141241386-3	chr5	141241260	141241460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-174.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	25.44	17.1	19.97	33.78	19.23	27.91	24.25	30.53	26.36	23.1	35.17	18.17
Merged-chr7-129575929-3	chr7	129575821	129576021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15942.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	33.92	27.17	37.08	23.73	24.55	38.26	40.86	54.45	58.81	36.15	38.69	36.34
Merged-chr2-68434701-3	chr2	68434569	68434769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	37312.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	36.34	38.23	51.34	45.45	26.59	40.76	25.58	45.36	51.34	25.61	63.82	20.05
Merged-chr15-78298828-3	chr15	78298728	78298928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	6893.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	31.9	37.23	50.2	16.49	36.41	59.58	25.91	10.12	40.52	38.16	39.7	9.08
Merged-chr5-66151956-3	chr5	66151847	66152047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	7.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	18.98	14.84	26.24	9.25	16.77	24.77	12.29	20.22	29.7	30.13	20.1	20.68
Merged-chr6-114875277-3	chr6	114875179	114875379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	46542.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	129.62	131.05	122.65	131.92	128.05	141.42	109.95	116.27	111.33	123.52	125.12	67.98
Merged-chr13-21453660-3	chr13	21453556	21453756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013786)	promoter-TSS (NM_001013786)	71.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	51.69	48.04	33.66	43.44	28.64	41.39	79.72	43.99	31.47	45.19	42.71	35.4
Merged-chr7-114453376-3	chr7	114453286	114453486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	38132.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	35.13	34.46	38.79	37.4	36.41	33.24	29.56	38.58	69.82	59.75	63.82	31.33
Merged-chr11-48902196-3	chr11	48902099	48902299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-47.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	44.01	39.24	75.87	49.47	45.82	30.42	18.6	42.28	37.37	19.08	59.29	28.19
Merged-chr6-120037116-3	chr6	120037027	120037227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1528.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	16.56	19.87	16.54	20.91	31.5	41.08	24.91	29.5	48.78	30.63	52.76	18.17
Merged-chr1-93444968-2	chr1	93444885	93445085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133808, intron 1 of 27)	CpG	716.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	39.98	40.24	31.38	29.36	37.64	48.92	24.25	46.21	55.86	48.7	61.81	35.09
Merged-chr2-29673015-3	chr2	29672919	29673119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	53299.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	44.42	29.43	55.9	41.43	43.36	37.94	30.56	36.39	43.27	26.61	34.17	17.54
Merged-chr2-73214440-3	chr2	73214334	73214534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025942)	promoter-TSS (NM_025942)	13.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	96.1	82.0	100.4	77.22	110.87	132.95	87.69	132.17	117.62	109.46	172.85	87.09
Merged-chr4-123573032-3	chr4	123572942	123573142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-43378.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	12.52	13.33	16.54	18.1	17.18	31.98	28.9	29.52	32.06	39.16	48.24	34.46
Merged-chr1-144140037-3	chr1	144139930	144140130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153171, intron 5 of 5)	intron (NM_153171, intron 5 of 5)	37342.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	16.96	15.85	21.68	30.57	24.55	22.58	37.2	28.85	20.65	17.57	23.11	17.23
Merged-chr14-73176024-3	chr14	73175941	73176141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	30810.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	44.01	39.74	62.18	47.06	95.32	66.16	85.37	104.58	88.51	45.19	83.41	54.2
Merged-chr2-118883474-3	chr2	118883362	118883562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18153.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	5.65	18.36	22.25	15.28	7.77	17.56	12.95	13.91	16.92	23.1	22.61	16.92
Merged-chr1-125463034-3	chr1	125462886	125463086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27259.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	39.98	23.64	47.92	34.59	58.09	47.35	36.54	47.41	55.07	51.72	70.85	40.41
Merged-chr6-125349655-3	chr6	125349518	125349718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011609)	promoter-TSS (NM_011609)	-105.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	25.84	15.34	11.98	24.53	13.91	19.76	16.28	12.62	26.95	23.6	28.64	14.1
Merged-chr8-84638780-1	chr8	84638680	84638880	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007578, exon 46 of 47)	exon (NM_007578, exon 46 of 47)	24072.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	9.69	6.29	5.7	9.25	16.77	14.42	7.31	11.05	12.78	10.54	9.04	1.57
Merged-chr1-138288934-3	chr1	138288842	138289042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177397, exon 3 of 3)	3' UTR (NM_177397, exon 3 of 3)	15204.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	29.07	20.12	35.94	23.33	19.23	49.54	28.57	50.07	22.62	17.57	35.68	24.43
Merged-chr17-87672448-3	chr17	87672327	87672527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008628)	promoter-TSS (NM_008628)	-130.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	85.6	62.88	84.43	99.75	111.69	113.2	83.37	132.51	148.3	124.52	177.88	90.85
Merged-chr12-69372005-3	chr12	69371872	69372072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-178.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	84.39	77.22	71.88	68.37	76.09	88.11	55.8	67.65	107.98	132.05	132.66	76.12
Merged-chr10-40883446-3	chr10	40883349	40883549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	-85.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	53.3	37.48	54.19	33.38	63.82	53.93	47.83	56.83	51.14	41.67	75.87	31.95
Merged-chr1-34315619-1	chr1	34315519	34315719	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117580.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	3.23	0.25	4.56	5.23	0.82	2.2	8.3	9.39	0.98	5.52	5.53	1.57
Merged-chr18-79330290-3	chr18	79330198	79330398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-220907.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	23.02	22.89	29.66	47.46	34.36	31.67	25.58	49.01	24.39	27.62	59.29	32.58
Merged-chr10-68276514-3	chr10	68276417	68276617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	2209.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	33.92	70.68	49.63	20.91	29.86	70.55	21.92	23.19	67.46	104.44	74.87	47.93
Merged-chr15-86182772-3	chr15	86182672	86182872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2956.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	35.94	19.62	35.37	43.04	23.32	21.01	33.22	41.75	31.27	35.65	31.15	33.21
Merged-chrX-93863545-3	chrX	93863452	93863652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31457.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	31.5	32.7	25.1	45.45	52.77	27.59	34.21	52.51	41.7	30.63	32.16	30.07
Merged-chr5-137601158-3	chr5	137601060	137601260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030037)	promoter-TSS (NM_030037)	-101.0	NM_030037	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	80.36	86.27	80.43	71.19	66.27	114.77	48.5	70.26	116.44	95.9	85.42	59.52
Merged-chr5-100798646-3	chr5	100798533	100798733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081107)	promoter-TSS (NM_001081107)	-33.0	NM_001081107	191578.0	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	22.61	30.18	27.95	22.12	21.68	31.36	19.27	25.96	22.03	16.07	27.13	20.68
Merged-chr10-80676499-3	chr10	80676385	80676585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021462)	promoter-TSS (NM_021462)	-192.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	232.18	268.63	220.77	166.51	260.19	337.72	153.46	195.37	324.14	430.3	325.61	226.18
Merged-chr4-42999795-3	chr4	42999651	42999851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009503, intron 1 of 16)	CpG	756.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	32.71	34.96	19.4	36.6	29.05	41.39	43.85	32.05	53.7	54.73	62.31	42.29
Merged-chr11-32324741-3	chr11	32324602	32324802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-23109.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	21.4	19.62	25.67	40.62	22.91	13.17	13.62	24.53	21.64	17.07	27.64	18.48
Merged-chr4-142098009-3	chr4	142097924	142098124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13720.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	36.75	46.78	36.51	44.64	52.77	55.19	54.48	42.39	48.98	58.24	39.7	19.74
Merged-chr11-113450269-1	chr11	113450169	113450369	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	115546.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	4.85	2.01	2.28	7.24	35.59	26.97	25.58	37.01	5.11	6.53	2.51	10.02
Merged-chr7-128048987-3	chr7	128048864	128049064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-13676.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	22.21	21.13	33.66	47.86	22.09	16.62	20.26	25.23	13.37	14.06	23.62	14.72
Merged-chr4-120993270-3	chr4	120993165	120993365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-19943.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	88.84	93.57	118.08	102.56	68.32	77.45	73.74	97.49	77.1	72.3	84.92	55.45
Merged-chr5-99414498-3	chr5	99414388	99414588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161561.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	39.98	42.01	54.19	51.48	50.32	77.14	53.81	67.18	45.43	38.66	45.73	41.35
Merged-chr17-87247074-3	chr17	87246975	87247175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18872.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	165.56	175.31	222.48	176.16	203.32	235.18	166.42	167.97	244.29	234.48	284.41	139.4
Merged-chr2-84656013-3	chr2	84655952	84656152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 1 of 18)	B1_Mur2|SINE|Alu	2925.0	NM_001355064	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	47.65	28.42	49.06	33.78	50.73	49.86	46.5	69.06	63.33	43.68	66.33	45.42
Merged-chr1-149957690-3	chr1	149957599	149957799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3591.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	67.84	60.62	73.02	69.18	69.96	68.99	68.76	83.47	128.04	90.88	98.99	59.52
Merged-chr16-93832202-3	chr16	93832101	93832301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045529)	promoter-TSS (NM_001045529)	80.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	169.59	181.85	158.59	147.21	174.69	217.31	129.88	156.87	263.37	259.59	283.4	138.15
Merged-chr19-6296750-3	chr19	6296637	6296837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-9720.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	68.24	60.62	30.23	8.45	51.55	110.38	29.9	15.81	103.26	115.99	53.77	16.92
Merged-chr7-43530531-3	chr7	43530390	43530590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111058, intron 3 of 6)	intron (NM_001111058, intron 3 of 6)	2681.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	50.47	63.39	75.87	46.66	107.19	105.05	104.3	84.28	107.0	84.86	109.04	55.76
Merged-chr18-61107792-3	chr18	61107716	61107916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	2244.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	44.42	24.4	58.76	34.99	34.36	43.27	33.22	48.42	42.29	42.18	51.25	56.07
Merged-chr2-152847923-3	chr2	152847818	152848018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141976)	promoter-TSS (NM_001141976)	-46.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	71.88	65.15	83.29	105.78	128.46	143.93	60.46	103.43	108.57	109.46	144.71	73.62
Merged-chr7-27167192-3	chr7	27167084	27167284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-382.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	100.95	78.48	128.35	104.97	116.59	127.31	80.05	122.36	140.83	160.17	174.86	101.81
Merged-chr18-3507880-3	chr18	3507800	3508000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-57.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	214.82	228.64	265.83	273.5	261.42	275.63	237.83	348.65	293.66	280.17	458.26	157.26
Merged-chr7-49462671-3	chr7	49462585	49462785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 9 of 37)	intron (NM_175272, intron 9 of 37)	174150.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	42.4	40.24	71.31	62.34	57.27	73.06	49.16	82.37	70.22	47.2	43.21	36.65
Merged-chr11-115048431-3	chr11	115048302	115048502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199201).2	promoter-TSS (NM_199201).2	-107.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	31.9	37.48	50.77	65.56	65.87	70.87	58.79	65.94	37.37	24.6	34.67	30.7
Merged-chr4-101172888-3	chr4	101172760	101172960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 10 of 24)	intron (NM_146145, intron 10 of 24)	92422.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	74.3	58.86	100.97	94.11	54.82	60.52	46.17	82.79	72.38	48.7	92.46	41.04
Merged-chr4-88878449-1	chr4	88878349	88878549	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1752.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	4.85	2.01	2.85	6.84	1.64	2.2	6.31	8.72	3.74	2.51	5.02	2.19
Merged-chr5-135472619-3	chr5	135472515	135472715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	72507.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	97.31	75.71	103.25	76.02	106.37	106.93	74.07	101.89	119.98	109.96	141.2	66.1
Merged-chr9-119981834-6	chr9	119981687	119981887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1236.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	12.11	13.08	13.69	22.93	13.5	15.99	12.62	10.71	16.33	18.08	12.06	10.02
Merged-chr14-8111755-3	chr14	8111659	8111859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13548.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	31.5	39.99	68.45	43.84	47.46	53.31	55.47	82.74	75.53	80.34	138.18	66.41
Merged-chr1-128103184-3	chr1	128103088	128103288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	-118.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	248.33	235.68	258.99	277.52	284.33	332.07	253.11	318.7	328.47	301.26	405.0	196.73
Merged-chr10-81366243-3	chr10	81366132	81366332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-412.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	21.4	32.45	38.79	26.14	36.0	40.45	23.58	35.3	28.72	27.62	64.82	20.99
Merged-chr5-112254734-3	chr5	112254656	112254856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1064.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	36.34	29.93	72.45	49.07	43.77	33.55	27.57	38.36	43.07	63.77	56.78	43.23
Merged-chr2-106003283-3	chr2	106003178	106003378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	271.0	NM_026992	99349.0	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	86.82	79.99	74.73	90.49	86.73	112.26	69.42	115.54	147.12	117.99	141.2	65.47
Merged-chr8-42210221-1	chr8	42210121	42210321	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	382954.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.02	1.51	1.14	5.63	15.96	2.2	4.65	24.11	0.39	0.5	6.03	0.0
Merged-chr11-116671609-3	chr11	116671501	116671701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-59.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	89.24	85.27	63.89	70.79	79.78	99.72	44.84	63.67	103.26	98.91	76.38	62.03
Merged-chr13-34738695-3	chr13	34738587	34738787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138746)	promoter-TSS (NM_138746)	-955.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	34.73	24.9	22.25	35.8	24.55	21.95	22.26	31.82	22.42	21.09	26.63	19.11
Merged-chr13-5779588-3	chr13	5779483	5779683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78509.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	90.45	53.58	36.51	71.99	70.37	74.32	28.57	60.95	69.82	75.32	83.91	39.16
Merged-chr1-136138411-3	chr1	136138302	136138502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	L3b|LINE|CR1	7012.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	23.82	13.08	26.24	18.1	28.23	23.83	24.91	37.88	31.86	26.11	42.71	27.88
Merged-chr1-179434929-3	chr1	179434809	179435009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	83132.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	31.9	23.64	42.21	49.47	44.18	36.06	27.57	38.27	65.3	50.21	63.82	44.8
Merged-chr16-16571542-3	chr16	16571439	16571639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-11320.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	76.32	67.66	108.96	82.45	95.32	111.63	73.74	81.0	78.68	78.83	103.51	82.7
Merged-chr4-132422544-3	chr4	132422440	132422640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175306)	promoter-TSS (NM_175306)	-94.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	126.39	118.97	96.41	84.86	118.64	136.72	78.72	93.62	144.17	135.07	146.72	71.42
Merged-chr4-10965175-3	chr4	10965000	10965200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42519.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	26.25	27.92	30.23	31.37	22.5	32.93	33.22	25.35	23.41	31.63	36.18	14.1
Merged-chr10-127621785-3	chr10	127621707	127621907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-659.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	43.21	62.88	59.33	68.37	95.32	87.17	108.29	123.87	91.46	102.93	117.08	52.32
Merged-chr2-127008692-3	chr2	127008583	127008783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175550)	promoter-TSS (NM_175550)	-28.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	36.75	36.97	28.52	24.94	27.41	42.02	33.88	33.7	34.42	43.18	43.72	40.41
Merged-chr2-12317573-3	chr2	12317473	12317673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15629.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	71.88	62.63	99.26	100.95	97.37	72.12	110.61	121.74	103.46	92.89	189.44	75.5
Merged-chr15-89089075-3	chr15	89088973	89089173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027905)	promoter-TSS (NM_027905)	35.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	33.11	29.18	36.51	33.78	43.77	33.55	23.92	37.4	51.53	56.74	45.22	26.63
Merged-chr8-66386243-3	chr8	66386170	66386370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166375)	promoter-TSS (NM_001166375)	-31.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	39.57	23.64	34.8	46.66	42.14	42.02	41.52	47.5	35.6	48.2	60.8	24.75
Merged-chr2-124858763-3	chr2	124858667	124858867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	205186.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	23.42	14.84	27.95	25.74	33.14	45.78	42.52	39.2	41.3	57.24	30.65	32.27
Merged-chr11-83299010-3	chr11	83298908	83299108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-31.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	69.05	65.65	92.41	70.38	81.0	109.44	58.13	87.65	122.93	117.49	122.1	72.99
Merged-chr3-126611654-1	chr3	126611554	126611754	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14703.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.04	2.26	4.56	4.02	4.5	2.2	6.31	8.61	3.34	11.05	4.52	6.27
Merged-chr2-164441989-1	chr2	164441889	164442089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	1199.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	18.17	18.86	1.14	1.21	2.05	9.41	0.66	0.59	4.13	10.04	2.01	0.63
Merged-chr8-14890484-1	chr8	14890384	14890584	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1948.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	13.73	27.67	34.8	40.62	35.18	49.86	46.84	64.09	65.89	42.18	79.89	44.8
Merged-chr1-77438768-1	chr1	77438668	77438868	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	58000.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	1.21	2.77	0.57	10.46	4.09	3.45	6.98	12.79	1.77	2.51	3.52	3.45
Merged-chr15-77306847-4	chr15	77306669	77306869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001110827, exon 1 of 14)	5' UTR (NM_001110827, exon 1 of 14)	284.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	12.11	17.36	22.25	14.88	22.91	28.85	22.59	26.41	14.95	16.07	19.09	21.93
Merged-chr12-91766483-3	chr12	91766386	91766586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	19950.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	222.09	202.23	300.63	270.28	237.28	249.92	320.21	342.2	287.36	279.67	485.4	182.01
Merged-chr11-23805986-3	chr11	23805893	23806093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	33.52	34.46	31.95	23.33	43.77	39.51	16.28	41.36	45.43	43.68	75.87	27.88
Merged-chr4-116720836-3	chr4	116720735	116720935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-120.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	111.45	92.06	82.72	94.52	121.91	151.46	70.42	101.41	153.22	127.03	137.18	80.51
Merged-chr7-45103836-3	chr7	45103737	45103937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010189)	promoter-TSS (NM_010189)	-15.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	98.93	101.37	111.81	119.45	122.73	137.03	116.59	142.99	101.29	97.41	164.31	67.35
Merged-chr18-32240267-3	chr18	32240171	32240371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-60.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	62.99	56.34	86.71	59.93	83.46	68.05	50.82	111.06	87.13	79.33	109.04	77.06
Merged-chr8-84236202-3	chr8	84236112	84236312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	830.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	35.53	35.97	31.38	18.5	43.77	79.65	16.28	21.42	61.96	72.3	58.79	24.75
Merged-chr7-4082971-3	chr7	4082873	4083073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-19769.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	73.09	61.62	66.74	78.43	62.18	72.12	50.16	85.6	63.73	77.32	77.38	34.77
Merged-chr17-47175002-4	chr17	47174903	47175103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	34061.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	27.86	22.89	21.68	30.16	22.09	35.43	34.88	16.77	23.21	32.64	30.65	22.87
Merged-chr11-73031001-3	chr11	73030917	73031117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018883, intron 9 of 15)	intron (NM_018883, intron 9 of 15)	12009.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	17.36	16.1	19.97	22.93	40.91	20.7	12.95	29.3	27.14	24.1	23.62	20.05
Merged-chr11-75592852-3	chr11	75592767	75592967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	4788.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	34.73	30.69	35.94	41.43	54.82	41.71	20.59	28.46	36.98	33.64	51.76	14.72
Merged-chr8-77610769-3	chr8	77610665	77610865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145599)	promoter-TSS (NM_145599)	-112.0	NM_145599	234463.0	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	125.98	116.96	159.73	135.94	126.0	158.67	106.96	169.01	185.28	135.57	186.92	94.61
Merged-chr6-16884109-3	chr6	16884006	16884206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	14335.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	47.24	30.18	29.09	51.08	38.46	32.3	25.91	55.46	35.4	39.16	44.22	19.42
Merged-chr9-107640352-3	chr9	107640283	107640483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5041.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	86.82	64.64	114.09	84.86	98.18	85.92	66.43	114.53	112.31	100.92	137.68	75.5
Merged-chr13-23763643-3	chr13	23763552	23763752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-16.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	49.67	40.5	41.64	35.8	54.41	48.29	27.24	32.89	67.86	78.33	90.95	40.72
Merged-chr16-5013588-3	chr16	5013486	5013686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133185)	promoter-TSS (NM_133185)	-33.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	179.29	147.14	175.7	170.93	160.78	215.42	112.94	180.87	215.37	230.97	249.73	119.98
Merged-chr13-100594233-1	chr13	100594133	100594333	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22711.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.0	0.75	3.99	0.0	1.23	0.0	0.0	0.06	55.07	44.69	64.82	49.18
Merged-chr2-92065482-3	chr2	92065403	92065603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41333.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	49.26	65.65	51.91	41.43	53.59	89.68	38.53	35.33	75.53	74.81	70.85	41.98
Merged-chr1-120519641-3	chr1	120519533	120519733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14609.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	46.03	67.41	67.88	22.93	21.27	47.04	38.53	10.82	105.82	119.5	79.89	37.59
Merged-chr2-129546992-3	chr2	129546892	129547092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-10390.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	119.93	98.85	100.97	105.78	122.73	153.02	103.97	109.07	109.36	136.07	113.56	61.4
Merged-chr6-129471569-3	chr6	129471469	129471669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1210.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	56.94	39.49	39.93	52.29	38.86	48.6	67.43	45.73	45.63	51.21	58.29	42.29
Merged-chr8-94387489-3	chr8	94387382	94387582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	1053.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	100.14	116.96	74.73	92.91	151.37	160.24	75.4	77.16	129.62	150.13	115.57	59.52
Merged-chr15-84235494-3	chr15	84235385	84235585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3442.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	59.76	50.05	30.23	16.49	72.82	84.04	28.23	25.43	67.07	89.88	50.75	19.11
Merged-chr12-111726308-3	chr12	111726206	111726406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 3 of 5)	intron (NM_001163388, intron 3 of 5)	13037.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	27.05	27.92	24.53	33.38	24.14	44.53	27.24	25.91	51.14	49.21	69.34	29.13
Merged-chr15-96654929-3	chr15	96654822	96655022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12009.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	34.73	23.9	54.76	43.84	32.73	35.43	37.54	51.36	41.89	37.16	94.47	55.45
Merged-chr13-64153372-3	chr13	64153274	64153474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-175.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	265.7	278.69	288.65	281.54	246.69	300.09	213.92	325.85	395.93	395.16	583.88	239.96
Merged-chr6-97280721-3	chr6	97280660	97280860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27980.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	35.94	31.94	34.23	15.69	26.59	49.86	25.24	25.93	47.99	55.73	35.17	20.99
Merged-chr19-5946272-3	chr19	5946162	5946362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	17944.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	33.92	25.91	26.81	23.33	40.09	37.0	30.56	32.61	49.76	45.69	38.19	35.09
Merged-chr2-181187809-3	chr2	181187715	181187915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151465, exon 2 of 4)	non-coding (NR_151465, exon 2 of 4)	568.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	81.57	68.92	79.86	60.73	92.46	88.43	76.07	65.36	119.98	97.41	170.84	80.51
Merged-chr4-31963956-3	chr4	31963872	31964072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-135.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	130.83	141.86	119.23	125.89	137.46	187.52	130.21	90.95	157.74	171.72	203.51	97.74
Merged-chr8-3664621-3	chr8	3664523	3664723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1139.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	44.42	44.27	88.99	61.13	107.59	106.93	83.37	99.11	99.72	112.47	139.19	79.88
Merged-chr14-63124418-3	chr14	63124321	63124521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1959.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	25.44	22.64	34.23	39.82	23.32	38.26	33.88	41.1	39.93	36.65	50.25	31.95
Merged-chr2-6256972-3	chr2	6256877	6257077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43983.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	26.25	19.37	18.25	22.52	6.55	17.25	8.64	28.49	37.96	19.58	30.65	14.1
Merged-chr9-85569060-3	chr9	85568974	85569174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180260.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	34.32	32.2	56.48	67.57	48.27	44.21	37.54	62.24	44.45	47.7	72.36	44.48
Merged-chr8-39298665-2	chr8	39298563	39298763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 1 of 3)	intron (NR_044988, intron 1 of 3)	683.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	27.05	31.19	39.93	57.11	41.32	33.87	28.9	59.44	2.36	1.0	0.5	0.0
Merged-chr8-84966152-3	chr8	84966050	84966250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-139.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	88.84	75.21	116.37	89.29	100.64	107.24	86.36	99.25	105.23	87.37	119.59	67.98
Merged-chr7-118117694-3	chr7	118117588	118117788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-1541.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	54.51	31.44	65.6	41.02	41.73	49.86	28.57	41.22	78.09	73.81	63.31	35.4
Merged-chr19-55294257-3	chr19	55294149	55294349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027976, exon 19 of 22)	exon (NM_027976, exon 19 of 22)	21787.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	26.65	17.86	31.95	25.34	20.46	16.93	17.61	18.9	23.41	26.11	33.16	17.54
Merged-chr17-43036303-3	chr17	43036219	43036419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	19764.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	21.8	13.58	19.97	30.57	26.18	32.3	30.89	55.57	21.83	20.08	30.65	17.86
Merged-chr1-54870765-1	chr1	54870665	54870865	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	55622.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.04	4.28	8.56	7.24	3.27	5.33	7.31	7.82	4.52	3.51	2.01	1.25
Merged-chr4-141670465-3	chr4	141670367	141670567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6352.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	55.32	55.08	37.65	41.83	61.77	68.36	35.54	60.84	81.82	71.3	57.79	54.2
Merged-chr19-5490433-3	chr19	5490330	5490530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-25.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	121.14	127.78	113.52	107.39	108.41	133.27	59.13	80.13	172.3	144.61	144.21	86.77
Merged-chrUn_GL456389-10405-1	chrUn_GL456389	10305	10505	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	162.46	275.66	365.81	77.38
Merged-chr10-61715264-3	chr10	61715137	61715337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284300)	promoter-TSS (NM_001284300)	-26.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	25.44	24.65	24.53	23.73	44.59	37.32	29.9	26.47	33.04	34.65	43.21	23.18
Merged-chr15-93275355-3	chr15	93275231	93275431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-152.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	283.87	306.61	272.68	296.02	304.37	292.88	273.38	291.09	374.1	387.12	508.01	234.95
Merged-chr16-75855631-3	chr16	75855534	75855734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53632.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	105.39	112.18	95.27	111.41	184.91	198.49	135.53	204.14	214.98	196.83	214.06	112.46
Merged-chr8-69012788-3	chr8	69012704	69012904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75932.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	122.35	87.53	113.52	104.57	92.05	110.38	93.01	90.06	83.0	94.9	112.05	54.51
Merged-chr12-118994429-3	chr12	118994346	118994546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28025.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	16.56	19.37	36.51	42.23	23.32	23.2	24.91	33.34	39.34	27.11	40.7	13.16
Merged-chr12-112619973-3	chr12	112619883	112620083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-64.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	86.41	75.96	92.98	67.17	106.78	102.22	84.04	102.36	81.82	90.88	81.9	64.85
Merged-chr1-155059667-3	chr1	155059564	155059764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23600.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	67.43	40.24	65.03	75.61	68.32	67.73	40.86	76.85	89.89	58.75	113.56	60.46
Merged-chr2-26493123-3	chr2	26493029	26493229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10693.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	53.3	44.02	41.64	44.24	54.41	31.04	34.21	38.07	43.47	52.72	64.32	31.01
Merged-chr18-14657061-3	chr18	14656966	14657166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25848.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	45.23	26.91	45.64	51.08	46.23	51.74	36.87	60.53	54.88	52.22	83.91	46.05
Merged-chr9-123928243-3	chr9	123928171	123928371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40421.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	68.65	60.87	103.82	78.03	75.28	82.16	45.18	77.66	91.07	70.8	77.38	55.45
Merged-chr19-10949309-3	chr19	10949202	10949402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-36.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	79.14	78.23	81.0	48.26	99.0	98.46	38.2	57.84	111.13	93.89	118.08	69.86
Merged-chr6-116198099-3	chr6	116198000	116198200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	76.72	76.46	63.32	77.22	85.91	137.03	75.4	71.36	115.85	119.0	149.24	66.1
Merged-chr8-13671825-3	chr8	13671724	13671924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	5763.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	43.61	28.93	47.92	63.55	29.86	39.82	59.13	78.53	41.89	29.62	61.3	42.92
Merged-chr11-102407091-1	chr11	102406991	102407191	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	426.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	7.27	10.06	4.56	3.62	6.14	13.8	6.31	11.1	11.01	15.57	12.06	10.65
Merged-chr7-43553317-3	chr7	43553210	43553410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-9060.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	35.94	17.36	42.21	20.91	23.73	23.83	27.57	31.88	20.65	17.57	24.62	18.48
Merged-chr17-7917394-3	chr17	7917284	7917484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8616.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	23.82	39.24	49.63	41.02	42.96	62.09	45.18	54.06	61.37	51.72	66.33	38.85
Merged-chr2-53191971-3	chr2	53191860	53192060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-124.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	95.3	105.14	115.8	118.25	115.78	121.35	98.99	118.49	134.14	133.06	178.38	94.61
Merged-chr6-97430496-3	chr6	97430389	97430589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	28797.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	19.38	24.65	24.53	23.33	39.27	28.54	21.92	22.88	26.16	35.15	21.1	17.23
Merged-chr3-30601366-3	chr3	30601260	30601460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-727.0	NM_001289623	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	38.36	38.23	37.65	38.61	33.55	35.12	29.23	17.58	51.53	36.15	37.18	35.09
Merged-chr5-99375882-3	chr5	99375771	99375971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122944.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	130.02	109.16	162.58	73.2	142.37	202.57	176.71	160.94	149.09	138.08	190.94	61.71
Merged-chr14-75284290-3	chr14	75284155	75284355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-111.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	71.47	53.07	71.88	53.49	64.23	60.52	50.49	57.48	87.13	70.8	73.36	41.35
Merged-chr6-52713719-3	chr6	52713571	52713771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025816)	promoter-TSS (NM_025816)	-58.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	70.26	51.56	45.07	60.73	54.0	80.59	36.54	65.27	71.99	67.78	81.4	32.89
Merged-chr1-177131682-3	chr1	177131568	177131768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	117099.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	27.05	16.6	27.95	19.71	38.05	30.73	25.24	38.75	39.53	35.65	35.17	22.24
Merged-chr5-43786772-3	chr5	43786667	43786867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4618.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	34.73	36.97	51.91	60.33	74.46	59.89	68.1	91.49	47.21	51.72	65.83	31.33
Merged-chr16-36665984-3	chr16	36665888	36666088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	89.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	129.21	102.37	126.64	94.11	69.96	176.23	62.78	55.51	123.72	128.54	160.79	56.7
Merged-chr17-50471418-3	chr17	50471317	50471517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38130.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	32.71	26.91	17.68	25.34	28.23	42.33	22.26	28.99	49.76	35.15	57.28	15.66
Merged-chr13-41230487-3	chr13	41230383	41230583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10080.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	25.04	43.51	37.65	32.98	38.46	39.2	30.89	30.87	52.12	55.73	62.81	33.21
Merged-chr11-29526348-3	chr11	29526242	29526442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133767)	promoter-TSS (NM_133767)	-55.0	NM_001282120	76784.0	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	23.02	23.14	24.53	28.56	30.68	26.34	19.93	28.18	20.85	21.59	33.16	16.6
Merged-chr10-81192682-3	chr10	81192572	81192772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007828, exon 8 of 8)	exon (NM_007828, exon 8 of 8)	-2019.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	36.34	34.71	37.65	37.0	41.32	51.11	24.25	39.84	37.17	47.2	38.69	23.18
Merged-chr2-103051379-1	chr2	103051279	103051479	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22134.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.63	4.53	6.85	1.61	0.41	3.45	9.3	9.25	4.52	7.03	5.02	5.95
Merged-chr13-56178760-3	chr13	56178662	56178862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168615, exon 1 of 3)	5' UTR (NM_001168615, exon 1 of 3)	123.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	78.74	54.58	91.84	114.63	50.73	78.71	51.49	107.19	41.3	43.18	73.86	36.34
Merged-chrX-57393062-3	chrX	57392953	57393153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011252)	promoter-TSS (NM_011252)	-17.0	NM_001166623	19655.0	Mm.28275	NM_011252	ENSMUSG00000031134	Rbmx	hnRNP G	RNA binding motif protein, X chromosome	protein-coding	37.96	48.8	54.19	62.34	65.87	66.16	58.79	66.2	79.07	55.73	97.48	38.22
Merged-chr2-128429311-3	chr2	128429233	128429433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	18.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	59.76	47.04	49.63	39.82	35.59	45.78	31.89	41.72	69.23	89.37	48.74	48.56
Merged-chr7-101970248-3	chr7	101970267	101970467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133947, intron 1 of 24)	CpG	524.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	17.77	25.66	11.41	15.69	17.59	26.65	9.63	17.16	22.62	31.63	20.6	24.75
Merged-chr4-120926255-3	chr4	120926161	120926361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-1256.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	45.63	26.41	43.93	19.31	23.32	52.99	27.9	26.47	43.86	36.15	24.62	12.22
Merged-chr8-84856981-3	chr8	84856884	84857084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	-2.0	NR_152751	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	29.48	41.25	22.82	24.53	44.18	55.19	31.89	45.87	63.33	45.19	54.77	20.05
Merged-chr1-155098895-2	chr1	155098811	155099011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010500, exon 1 of 1)	exon (NM_010500, exon 1 of 1)	725.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	87.62	108.66	31.38	22.12	55.23	92.19	37.87	18.9	97.36	115.48	67.84	47.62
Merged-chr7-27179016-3	chr7	27178891	27179091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-108.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	200.69	197.7	241.3	243.73	230.73	284.1	191.99	223.63	246.84	280.17	370.33	161.96
Merged-chr4-103114346-3	chr4	103114252	103114452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	-38.0	NM_027696	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	106.6	79.73	143.76	121.06	110.87	129.19	96.66	123.79	170.53	142.6	277.37	111.21
Merged-chr12-76537632-3	chr12	76537534	76537734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4074.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	219.66	210.78	268.69	267.06	173.46	211.03	186.68	246.53	198.06	192.31	297.97	149.43
Merged-chr11-17907044-3	chr11	17906945	17907145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46830.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	23.42	24.15	39.36	43.04	39.27	21.95	45.18	47.36	26.16	23.1	46.23	11.9
Merged-chr7-44986689-3	chr7	44986599	44986799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019830)	promoter-TSS (NM_019830)	-201.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	307.29	308.12	338.28	329.8	324.42	470.36	250.46	283.09	355.61	402.69	462.79	213.02
Merged-chr9-109931658-3	chr9	109931554	109931754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008633)	promoter-TSS (NM_008633)	-120.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	226.93	216.06	267.54	257.01	188.19	284.1	193.99	240.56	265.53	275.15	381.38	180.44
Merged-chr2-21205305-2	chr2	21205213	21205413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	52.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	31.5	28.93	26.24	29.76	30.27	34.81	15.61	19.04	49.96	32.13	40.7	19.11
Merged-chr8-124756891-2	chr8	124756780	124756980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5071.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	23.82	29.68	27.38	6.03	14.32	35.75	15.61	2.55	9.83	5.52	5.02	1.25
Merged-chr10-118052187-3	chr10	118052103	118052303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	46.03	46.28	50.2	64.35	64.64	70.55	44.51	71.13	71.99	62.76	81.4	53.26
Merged-chr17-17838342-3	chr17	17838237	17838437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162909, exon 8 of 9)	exon (NM_001162909, exon 8 of 9)	7362.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	190.19	194.93	148.32	168.92	222.96	281.59	158.11	229.43	241.73	319.34	341.19	146.92
Merged-chr7-144553784-3	chr7	144553659	144553859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033319)	promoter-TSS (NM_001033319)	-30.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	106.2	102.62	121.51	99.75	129.28	119.78	73.74	111.17	137.88	142.6	168.83	92.1
Merged-chr11-8443823-3	chr11	8443726	8443926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 27 of 30)	intron (NM_001083587, intron 27 of 30)	220709.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	16.15	14.59	26.24	30.97	14.73	37.94	32.22	42.59	25.18	23.6	31.66	31.95
Merged-chr4-121017259-3	chr4	121017140	121017340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133716)	promoter-TSS (NM_133716)	7.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	41.99	60.87	41.07	39.82	51.55	57.7	45.51	29.78	61.17	78.33	95.47	41.35
Merged-chr6-87916142-3	chr6	87916048	87916248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173737, intron 2 of 6)	intron (NM_173737, intron 2 of 6)	2172.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	58.55	47.29	47.92	52.29	63.82	71.49	33.88	84.98	56.84	48.7	61.81	51.38
Merged-chr7-24629009-3	chr7	24628892	24629092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001102613, exon 15 of 15)	3' UTR (NM_001102613, exon 15 of 15)	-7578.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	77.93	53.32	81.0	91.7	84.28	80.59	72.75	95.66	103.65	80.84	110.55	56.7
Merged-chr11-76243742-3	chr11	76243635	76243835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026029)	promoter-TSS (NM_026029)	-1.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	23.82	18.61	21.11	10.86	17.18	35.43	12.29	17.27	54.88	45.69	32.16	29.76
Merged-chr8-80948953-1	chr8	80948853	80949053	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65953.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	43.21	34.71	46.78	37.81	55.64	72.44	48.83	52.68	69.43	89.88	80.4	40.1
Merged-chr6-37732553-3	chr6	37732466	37732666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138245.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	44.82	61.37	41.64	52.69	76.5	95.01	41.52	77.64	132.57	174.23	114.06	102.12
Merged-chr15-78572785-3	chr15	78572676	78572876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	7.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	28.67	22.39	32.52	19.71	26.59	29.16	13.29	27.39	38.94	31.63	49.75	16.6
Merged-chr7-30121865-3	chr7	30121783	30121983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081007)	promoter-TSS (NM_001081007)	-49.0	NM_001081007	233060.0	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	4930428B01Rik|5930415A09Rik|KS1|Znf382	zinc finger protein 382	protein-coding	37.96	43.01	34.8	38.61	54.41	39.51	28.9	56.92	35.01	33.64	66.33	32.27
Merged-chr2-128731590-3	chr2	128731476	128731676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	32661.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	16.56	20.88	27.95	21.72	36.0	31.67	43.85	43.6	36.39	47.2	32.66	21.3
Merged-chr8-116733338-2	chr8	116733239	116733439	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029441)	promoter-TSS (NM_029441)	-348.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	10.5	8.8	6.28	6.03	18.0	15.68	14.28	12.42	14.95	18.58	29.65	5.64
Merged-chr9-58806126-3	chr9	58806019	58806219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17393.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	18.98	14.59	27.95	22.12	27.0	19.44	10.96	22.29	28.72	25.11	31.15	20.99
Merged-chr7-3290420-3	chr7	3290330	3290530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016969)	promoter-TSS (NM_016969)	-125.0	NM_016969	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	128.0	93.57	75.87	92.91	55.64	73.69	18.6	35.72	130.99	139.08	143.21	56.07
Merged-chr3-88177279-1	chr3	88177179	88177379	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	506.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	18.98	10.06	13.12	18.5	19.64	29.48	19.93	18.39	37.96	32.64	26.63	25.06
Merged-chr11-106751187-3	chr11	106751098	106751298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271372)	promoter-TSS (NM_001271372)	-28.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	18.57	14.09	28.52	16.09	24.96	22.26	21.26	19.68	34.62	32.13	41.71	16.29
Merged-chr13-23762566-5	chr13	23762427	23762627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013550)	promoter-TSS (NM_013550)	-141.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	52.09	47.29	55.33	50.27	43.77	46.1	43.18	35.69	64.12	56.74	72.36	48.56
Merged-chr6-28261962-3	chr6	28261848	28262048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-347.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	67.84	77.47	82.15	71.19	86.32	96.58	53.48	98.8	98.15	84.35	142.71	57.64
Merged-chr18-12643589-5	chr18	12643453	12643653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028341)	promoter-TSS (NM_028341)	20.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	13.33	20.37	17.68	23.33	14.32	18.5	13.29	12.76	16.72	24.6	20.6	22.56
Merged-chr2-166793761-3	chr2	166793666	166793866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023815)	promoter-TSS (NM_023815)	-1.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	47.24	39.24	29.09	33.38	45.41	28.22	25.58	27.5	36.98	40.67	48.74	26.0
Merged-chr19-59072052-3	chr19	59071945	59072145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4024.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	24.63	29.18	17.68	20.51	53.18	39.51	24.25	38.78	48.39	47.7	28.14	17.54
Merged-chr10-52419579-3	chr10	52419504	52419704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2057.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	45.23	29.43	63.32	49.47	92.46	52.68	100.98	121.12	66.28	76.82	88.94	46.36
Merged-chr17-78916544-3	chr17	78916451	78916651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	52.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	37.55	61.12	55.9	72.8	82.64	73.38	52.82	62.52	67.86	81.34	60.8	36.65
Merged-chr5-21517735-3	chr5	21517633	21517833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 17 of 20)	ORR1C1|LTR|ERVL-MaLR	-25794.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	38.36	31.44	39.93	46.25	58.5	37.63	31.56	48.65	58.61	44.19	65.32	29.13
Merged-chr12-25281636-3	chr12	25281552	25281752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	152478.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	121.14	86.78	166.0	164.9	148.5	154.59	109.28	138.53	156.96	127.03	167.83	90.53
Merged-chr9-113739124-3	chr9	113739014	113739214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2359.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	48.86	28.17	42.78	37.0	32.32	51.11	38.53	50.64	60.38	46.7	80.9	45.11
Merged-chr7-126898279-3	chr7	126898198	126898398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028389)	promoter-TSS (NM_028389)	-20.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	53.7	51.56	44.5	48.67	50.32	80.9	29.56	45.28	92.25	85.86	100.5	47.93
Merged-chr7-98703038-3	chr7	98702957	98703157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028410)	promoter-TSS (NM_028410)	-129.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	126.79	147.9	88.42	109.4	121.09	180.62	103.64	112.65	159.71	183.77	172.85	93.04
Merged-chr16-93810143-3	chr16	93810048	93810248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027293, exon 37 of 37)	exon (NM_027293, exon 37 of 37)	-15247.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	23.82	32.45	33.66	35.8	22.5	28.22	20.93	36.11	41.11	21.09	43.21	26.0
Merged-chr10-86704814-3	chr10	86704723	86704923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003939)	promoter-TSS (NM_001003939)	621.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	42.4	53.07	42.78	43.04	43.77	80.9	56.47	59.58	59.01	62.76	40.2	35.71
Merged-chr16-57902716-3	chr16	57902625	57902825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147988.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	49.26	34.21	66.74	53.09	68.73	66.16	75.07	81.34	66.48	61.76	104.52	53.26
Merged-chr11-21223759-3	chr11	21223662	21223862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15270.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	44.82	46.78	45.64	62.34	63.0	49.23	41.85	54.73	75.33	59.25	75.87	52.0
Merged-chr4-141444659-3	chr4	141444560	141444760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009541)	promoter-TSS (NM_009541)	-13.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	20.19	21.13	29.66	15.69	23.32	35.43	23.58	21.93	60.38	34.14	45.22	20.68
Merged-chr11-101665519-3	chr11	101665418	101665618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025404)	promoter-TSS (NM_025404)	-23.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	63.8	49.05	36.51	36.6	42.55	58.32	25.91	43.96	62.15	61.26	55.78	52.0
Merged-chr6-67069404-3	chr6	67069304	67069504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 4 of 6)	Lx5|LINE|L1	-31997.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	35.94	51.56	35.37	45.45	55.64	53.93	45.84	49.77	65.5	51.21	66.33	31.33
Merged-chr16-43889766-3	chr16	43889684	43889884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356328)	promoter-TSS (NM_001356328)	-108.0	NM_001356328	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	215.22	188.65	192.24	173.75	203.73	259.64	187.68	255.93	234.45	217.41	281.89	162.9
Merged-chr8-117405453-3	chr8	117405373	117405573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	L1MB7|LINE|L1	-47550.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	69.86	33.96	55.33	61.94	62.59	73.06	56.8	74.92	59.79	59.25	90.45	35.71
Merged-chr16-44988798-3	chr16	44988681	44988881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	45103.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	24.23	33.7	38.79	25.74	47.05	36.69	26.91	46.88	30.49	40.17	50.25	20.68
Merged-chr1-173427567-3	chr1	173427449	173427649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 1 of 8)	RMER19B|LTR|ERVK	6945.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	63.4	68.42	89.56	65.56	72.41	84.35	69.42	77.75	100.9	89.88	122.1	75.5
Merged-chr17-35823830-1	chr17	35823730	35823930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_133662)	TTS (NM_133662)	473.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	20.19	19.87	19.97	12.47	13.09	22.58	22.59	11.83	17.11	25.11	19.6	11.9
Merged-chr19-7482843-1	chr19	7482743	7482943	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003934, intron 1 of 8)	CpG	448.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	31.09	21.38	19.97	22.93	27.41	26.34	11.63	23.16	32.06	21.59	24.12	30.39
Merged-chr7-12897776-3	chr7	12897684	12897884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001447)	promoter-TSS (NM_001001447)	-25.0	NM_001290438	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	58.55	57.6	55.33	79.23	85.09	88.43	63.78	99.7	139.06	123.52	222.6	80.51
Merged-chr1-180263641-3	chr1	180263556	180263756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEb|LINE|L1	-7356.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	73.89	68.92	65.03	89.69	108.0	137.97	74.74	97.43	105.42	123.52	110.04	73.3
Merged-chr8-85071679-3	chr8	85071574	85071774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-83.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	34.73	35.72	53.05	32.18	40.5	55.82	38.2	47.3	69.63	57.24	57.79	37.59
Merged-chr10-75837498-3	chr10	75837402	75837602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2621.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	174.44	136.08	159.16	150.82	178.78	217.93	154.79	162.7	226.78	219.92	248.73	106.2
Merged-chr4-142021415-3	chr4	142021308	142021508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	3510.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	56.94	40.75	49.63	55.5	54.0	42.33	41.85	76.01	57.24	43.68	71.86	66.73
Merged-chr2-166713969-3	chr2	166713881	166714081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-149.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	104.18	115.7	130.63	115.43	121.5	206.96	109.28	96.51	184.69	228.46	220.59	121.55
Merged-chr2-127335465-3	chr2	127335356	127335556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-703.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	123.97	107.4	102.11	51.48	107.19	141.73	83.37	61.35	150.86	180.76	140.19	94.92
Merged-chr9-49051611-3	chr9	49051484	49051684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3997.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	45.63	31.44	30.8	53.09	49.5	37.94	16.94	40.85	20.26	23.1	37.69	19.74
Merged-chr5-137628085-3	chr5	137628014	137628214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1009.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	42.8	25.66	31.95	22.93	34.77	51.11	26.24	24.56	39.93	32.64	34.67	16.92
Merged-chr4-53440247-3	chr4	53440154	53440354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-159.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	96.51	95.33	97.55	86.47	70.37	115.39	77.4	90.56	103.06	131.55	168.83	69.86
Merged-chr2-29346740-3	chr2	29346632	29346832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026896)	promoter-TSS (NM_026896)	-78.0	NM_026896	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	22.21	24.65	17.68	33.38	40.09	46.1	33.22	28.26	36.78	36.65	43.72	18.17
Merged-chr13-23585994-3	chr13	23585909	23586109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-39.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	105.79	78.48	94.7	112.62	87.14	114.45	57.13	91.21	123.72	116.99	131.65	87.4
Merged-chr16-24151523-3	chr16	24151406	24151606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68816.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	39.57	50.56	51.34	36.2	36.0	53.62	20.26	41.92	44.84	44.69	47.74	24.43
Merged-chr15-12014288-3	chr15	12014178	12014378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-18271.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	56.53	61.62	47.92	39.42	31.91	57.7	27.9	37.51	41.89	37.66	50.25	27.25
Merged-chr9-88956919-3	chr9	88956835	88957035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009742)	promoter-TSS (NM_009742)	15.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	63.4	52.07	83.29	58.32	55.64	66.16	52.82	29.19	64.71	75.32	80.4	34.77
Merged-chr4-134513033-1	chr4	134512933	134513133	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081099, intron 1 of 2)	MURVY-LTR|LTR|ERV1	2034.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.0	1.01	0.0	0.0	0.0	0.0	0.0	0.0	22.62	16.57	18.59	7.83
Merged-chr11-117881134-3	chr11	117881043	117881243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	24.63	24.15	19.97	20.11	29.86	24.77	34.21	44.83	29.5	20.59	28.14	28.82
Merged-chr6-112739211-3	chr6	112739134	112739334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 16 of 21)	intron (NM_080448, intron 16 of 21)	-42564.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	48.46	33.96	35.37	45.05	26.59	35.75	23.92	49.26	35.99	29.62	36.68	25.69
Merged-chr13-113795207-4	chr13	113795025	113795225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	617.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	12.52	16.1	22.82	14.08	8.59	13.48	11.29	14.33	18.29	14.56	14.57	20.36
Merged-chr17-34971718-1	chr17	34971618	34971818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	438.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	14.94	20.63	4.56	1.61	12.27	23.2	2.99	2.21	10.03	25.11	7.03	0.63
Merged-chr12-4918283-3	chr12	4918191	4918391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362349, intron 1 of 27)	intron (NM_001362349, intron 1 of 27)	938.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	39.98	24.4	35.37	33.38	27.0	33.55	30.56	38.47	37.57	28.62	39.7	22.87
Merged-chr5-122779732-3	chr5	122779638	122779838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145358)	promoter-TSS (NM_145358)	-328.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	76.32	92.31	81.58	76.82	109.64	175.29	86.36	82.07	149.68	150.13	136.17	59.52
Merged-chr16-55907247-3	chr16	55907132	55907332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028815, intron 10 of 10)	intron (NM_028815, intron 10 of 10)	-11953.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	29.48	44.77	37.08	43.04	18.41	57.38	11.63	29.1	49.17	40.67	39.19	21.3
Merged-chr14-65150045-3	chr14	65149955	65150155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-51949.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	113.47	122.24	111.81	124.68	144.82	188.14	109.95	101.94	194.33	218.42	220.09	100.25
Merged-chr7-139247689-3	chr7	139247606	139247806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-776.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	15.34	20.88	10.27	24.94	12.27	24.15	33.55	26.1	18.29	25.11	25.63	26.31
Merged-chr8-107561365-3	chr8	107561268	107561468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10124.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	86.01	73.45	114.66	94.52	96.55	89.05	59.46	96.11	116.64	85.36	118.59	55.45
Merged-chr10-82764043-3	chr10	82763914	82764114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010914, exon 1 of 8)	5' UTR (NM_010914, exon 1 of 8)	127.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	150.62	157.96	181.98	162.49	164.05	150.2	129.55	156.73	201.8	191.8	259.28	117.16
Merged-chr10-117216297-3	chr10	117216227	117216427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 6 of 6)	(TG)n|Simple_repeat|Simple_repeat	8180.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	62.99	29.18	74.73	55.5	54.82	41.08	33.55	74.16	63.33	50.21	100.5	46.36
Merged-chr11-119041092-3	chr11	119040999	119041199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-186.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	166.77	155.95	141.47	115.83	162.41	186.58	104.97	117.25	213.21	224.44	247.22	128.13
Merged-chr16-90459221-3	chr16	90459120	90459320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72823.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	55.32	39.74	53.05	32.58	59.73	63.97	32.55	53.3	65.89	90.88	64.82	26.0
Merged-chr17-26916967-3	chr17	26916879	26917079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-112.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	146.58	149.16	118.08	116.64	123.14	170.9	89.35	66.31	166.59	210.38	144.71	92.73
Merged-chr1-74375545-2	chr1	74375437	74375637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013612, intron 1 of 14)	intron (NM_013612, intron 1 of 14)	334.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	40.78	28.67	44.5	36.2	45.82	59.58	23.92	42.62	68.84	53.73	88.44	51.06
Merged-chr17-63849728-3	chr17	63849633	63849833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-14248.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	23.82	25.4	44.5	34.19	36.41	18.19	31.22	37.46	37.76	51.21	36.68	17.54
Merged-chr5-115237959-3	chr5	115237843	115238043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026398, exon 2 of 6)	5' UTR (NM_026398, exon 2 of 6)	2092.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	35.94	46.28	54.19	45.05	49.5	80.27	27.9	40.63	63.14	54.23	76.38	31.95
Merged-chr13-42528364-3	chr13	42528255	42528455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-152444.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	102.97	87.03	108.39	103.37	80.18	105.67	105.63	102.34	123.72	107.45	154.26	98.05
Merged-chr3-87255452-1	chr3	87255352	87255552	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030707, intron 6 of 7)	B4A|SINE|B4	8072.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	4.04	6.54	11.98	7.24	2.86	3.45	8.64	12.73	2.75	2.51	1.0	2.19
Merged-chr6-99485346-3	chr6	99485253	99485453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35640.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	26.25	15.85	46.78	53.89	33.14	43.59	47.83	77.05	34.42	41.67	66.33	42.6
Merged-chr9-99140318-3	chr9	99140222	99140422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029094)	promoter-TSS (NM_029094)	-111.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	77.93	63.89	83.29	65.56	99.41	112.26	83.04	96.56	133.94	165.19	186.42	62.97
Merged-chr1-24471419-3	chr1	24471335	24471535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	116002.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	56.53	51.56	41.64	41.02	69.55	90.94	103.31	51.0	81.63	77.32	77.38	30.39
Merged-chr2-151542507-3	chr2	151542400	151542600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302078)	promoter-TSS (NM_001302078)	17.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	53.7	41.5	43.93	52.29	65.87	49.54	29.9	70.85	44.84	43.68	86.43	25.06
Merged-chr11-115707421-3	chr11	115707332	115707532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	1165.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	31.09	14.09	19.97	21.32	25.36	25.4	23.92	26.72	26.16	23.1	23.62	18.8
Merged-chr6-83115501-3	chr6	83115393	83115593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020619)	promoter-TSS (NM_020619)	-13.0	NM_020619	57377.0	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	78.34	90.3	78.72	69.58	98.59	103.79	63.78	72.65	104.44	130.05	138.69	66.1
Merged-chr14-18271146-3	chr14	18271041	18271241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316711)	promoter-TSS (NM_001316711)	5.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	216.03	240.46	233.32	267.46	301.51	286.29	240.82	332.24	276.15	306.79	398.47	183.57
Merged-chr11-98774869-1	chr11	98774769	98774969	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145434, exon 1 of 8)	5' UTR (NM_145434, exon 1 of 8)	508.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	5.25	7.29	3.42	6.84	4.09	9.72	7.97	4.49	13.96	15.57	6.53	7.21
Merged-chr5-23850607-3	chr5	23850547	23850747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045040)	promoter-TSS (NR_045040)	50.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	80.76	105.64	73.59	71.99	49.09	37.0	37.54	59.89	108.77	99.42	90.45	50.75
Merged-chr6-120363931-3	chr6	120363850	120364050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-149.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	26.25	28.67	15.4	32.58	30.68	39.82	37.87	23.55	41.11	45.69	43.72	35.09
Merged-chr19-7494372-3	chr19	7494266	7494466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-72.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	149.81	159.72	185.4	150.82	125.19	189.08	107.96	105.06	138.47	170.72	133.16	79.57
Merged-chr8-123044160-3	chr8	123044052	123044252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	1577.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	168.38	107.91	108.96	84.06	159.14	181.25	73.74	122.97	153.02	148.62	130.65	79.88
Merged-chr5-136245401-3	chr5	136245295	136245495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-455.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	38.36	33.2	27.38	28.56	43.77	73.06	46.17	39.36	52.12	80.34	78.39	44.48
Merged-chrX-103622475-3	chrX	103622371	103622571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028380, intron 1 of 10)	intron (NR_028380, intron 1 of 10)	1283.0	NR_028381	78878.0	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	76.32	66.65	42.21	79.23	87.55	87.17	58.79	73.18	96.97	104.94	81.9	53.26
Merged-chr9-108263917-3	chr9	108263827	108264027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276481)	promoter-TSS (NM_001276481)	31.0	NM_001276486	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	176.05	134.32	146.04	174.96	189.41	169.64	145.16	157.32	211.64	202.85	244.71	101.5
Merged-chr5-24394433-4	chr5	24394402	24394602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	31.09	44.52	54.76	52.29	43.36	46.72	86.7	47.69	60.19	59.75	64.32	50.75
Merged-chr1-180822468-3	chr1	180822360	180822560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8855.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	33.11	15.85	29.66	21.32	34.77	32.61	20.93	41.1	34.42	30.13	46.73	30.39
Merged-chr17-88511478-3	chr17	88511383	88511583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18641.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	29.88	33.2	15.97	27.35	38.46	32.3	17.61	28.46	37.57	40.67	52.26	33.52
Merged-chr5-33274684-3	chr5	33274586	33274786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198860, intron 1 of 9)	CpG	318.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	37.55	24.15	39.36	18.9	28.23	37.0	28.23	22.26	38.55	72.3	41.2	25.69
Merged-chr18-69593353-3	chr18	69593250	69593450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	247190.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	31.9	28.17	49.06	38.21	48.68	37.63	44.51	54.08	61.17	53.22	96.98	32.27
Merged-chr8-40511850-3	chr8	40511788	40511988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	105.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	76.32	80.24	77.01	106.58	75.28	97.52	107.96	71.97	101.69	107.95	105.52	66.73
Merged-chr5-53267121-3	chr5	53267021	53267221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145433)	promoter-TSS (NM_001145433)	15.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	67.43	50.81	59.33	56.31	95.32	84.98	49.16	81.98	77.1	82.85	124.11	49.5
Merged-chr16-4489274-3	chr16	4489186	4489386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361474, intron 3 of 5)	intron (NM_001361474, intron 3 of 5)	33789.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	20.59	31.19	18.83	18.5	27.41	34.81	27.24	22.43	25.77	21.09	24.12	15.04
Merged-chr1-170215347-3	chr1	170215260	170215460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360809)	promoter-TSS (NM_001360809)	47.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	52.9	55.59	40.5	40.22	74.05	71.49	41.85	52.63	57.24	64.77	114.57	51.06
Merged-chr7-100499930-2	chr7	100499814	100500014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011671)	TTS (NM_011671)	6556.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	13.73	11.07	5.7	4.83	16.77	15.68	3.32	2.52	4.52	6.53	7.54	5.01
Merged-chr19-10018203-3	chr19	10018095	10018295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347430)	promoter-TSS (NM_001347430)	1.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	88.84	48.29	88.99	60.73	71.59	78.39	48.16	63.06	73.17	64.77	110.55	36.34
Merged-chr10-94093575-1	chr10	94093475	94093675	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 5 of 20)	PB1D10|SINE|Alu	-54356.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.63	4.78	1.14	8.04	0.41	1.25	1.99	1.09	27.54	29.12	24.12	17.86
Merged-chr8-123805964-2	chr8	123805867	123806067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009003)	promoter-TSS (NM_009003)	-29.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	26.25	14.09	19.4	18.5	42.96	25.4	24.25	25.09	2.56	0.5	0.0	0.94
Merged-chr8-79159583-3	chr8	79159459	79159659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	89024.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	28.27	26.66	18.25	43.04	21.68	21.95	33.22	57.03	28.52	21.59	41.2	15.98
Merged-chr5-143112629-2	chr5	143112528	143112728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080561, intron 1 of 16)	CpG	392.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	25.44	22.89	23.39	18.5	20.46	24.77	23.92	18.84	32.06	28.62	29.65	23.49
Merged-chr4-53218261-3	chr4	53218160	53218360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27936.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	37.15	33.45	42.78	63.95	51.55	73.06	56.14	74.72	65.89	63.27	48.24	41.66
Merged-chr4-62661717-3	chr4	62661621	62661821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-12253.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	52.09	60.62	56.48	76.82	69.96	76.51	53.48	84.31	64.91	43.68	74.37	34.77
Merged-chr16-94632119-3	chr16	94632014	94632214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	20695.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	29.48	19.87	21.11	20.91	30.27	32.61	26.91	41.8	47.8	34.14	60.3	33.83
Merged-chr2-120540040-3	chr2	120539943	120540143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 3 of 21)	intron (NM_011743, intron 3 of 21)	23816.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	80.36	70.93	102.11	119.05	85.91	90.31	60.12	102.98	83.0	64.27	101.0	53.88
Merged-chr12-16894783-5	chr12	16894659	16894859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-219.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	48.46	28.67	43.93	29.36	65.46	80.9	33.55	40.4	75.72	90.38	117.58	56.07
Merged-chr5-139150089-3	chr5	139149974	139150174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-73.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	140.52	133.81	143.76	163.29	168.14	208.21	111.61	140.83	243.89	212.89	216.57	145.36
Merged-chr14-73441354-3	chr14	73441258	73441458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56069.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	20.59	18.11	46.78	22.93	45.82	22.26	36.54	42.06	27.14	26.11	41.2	25.06
Merged-chr5-122281363-3	chr5	122281265	122281465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3033.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	27.86	19.37	28.52	34.59	37.64	27.59	17.27	26.19	21.05	25.61	27.64	25.37
Merged-chr8-78508894-3	chr8	78508806	78509006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	22.0	NM_001252089	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	35.13	29.93	15.4	18.5	31.09	27.28	19.6	38.07	48.58	45.69	46.73	22.24
Merged-chrUn_JH584304-40700-1	chrUn_JH584304	40600	40800	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18989.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.29	25.11	25.63	20.05
Merged-chr18-46378772-3	chr18	46378682	46378882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66854.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	16.56	17.1	18.83	32.98	40.5	34.49	32.22	50.24	34.03	29.12	67.33	33.52
Merged-chr10-117072519-3	chr10	117072415	117072615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-8663.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	17.36	12.07	13.12	19.31	18.41	14.11	27.24	26.07	21.44	15.06	40.7	24.12
Merged-chr2-34372813-3	chr2	34372718	34372918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-773.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	75.91	66.91	70.17	79.23	76.5	97.21	67.76	79.29	93.23	103.43	135.67	91.16
Merged-chr16-43966014-3	chr16	43965902	43966102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13048.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	83.99	66.4	108.96	135.94	87.55	67.1	81.05	126.56	72.18	64.77	123.11	67.98
Merged-chr8-70659746-3	chr8	70659585	70659785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	53.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	67.03	57.85	41.64	36.2	44.59	47.04	33.22	41.83	49.96	58.24	50.25	32.58
Merged-chr19-4192030-3	chr19	4191935	4192135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-139.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	145.37	140.6	139.19	129.51	140.73	196.92	131.21	122.27	157.55	183.27	226.62	93.35
Merged-chr3-104992882-3	chr3	104992781	104992981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31172.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	46.03	55.84	69.6	50.27	61.37	67.73	37.87	42.79	49.37	49.71	81.9	46.36
Merged-chr1-148903318-3	chr1	148903221	148903421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1019118.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	86.82	85.77	109.53	132.73	123.96	102.85	103.31	144.51	126.86	112.47	119.59	65.16
Merged-chr8-20297021-3	chr8	20296938	20297138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030708, intron 1 of 4)	CpG	394.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	26.25	25.4	6.85	30.97	22.91	32.3	53.15	22.26	15.54	13.05	12.06	24.75
Merged-chr8-92853306-3	chr8	92853207	92853407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2026.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	43.61	29.43	58.19	55.5	65.87	45.78	59.46	71.1	54.68	63.77	111.05	40.72
Merged-chr15-97174779-1	chr15	97174679	97174879	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7535.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	4.44	6.29	10.84	2.82	13.91	14.11	16.61	18.36	17.51	16.57	10.05	11.9
Merged-chr16-44778933-3	chr16	44778837	44779037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13201.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	39.98	36.72	34.8	34.19	37.64	44.53	35.87	62.78	51.73	27.62	49.24	26.0
Merged-chr1-105742644-3	chr1	105742554	105742754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 24 of 28)	intron (NM_173187, intron 24 of 28)	-38069.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	29.88	21.38	29.66	26.95	30.68	22.58	28.9	39.62	29.7	40.17	50.25	26.94
Merged-chr13-23576165-2	chr13	23576065	23576265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178204, exon 1 of 1)	exon (NM_178204, exon 1 of 1)	402.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	18.57	12.32	21.68	10.46	12.27	18.19	4.32	5.89	8.85	19.58	11.05	18.48
Merged-chr14-75011187-3	chr14	75011084	75011284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-4843.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	26.25	26.16	23.96	25.34	45.82	40.14	42.19	48.34	40.12	42.68	59.29	20.68
Merged-chr10-118052553-3	chr10	118052435	118052635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89252.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	102.97	78.98	134.06	103.77	101.87	134.84	120.58	131.24	118.8	99.42	143.21	86.46
Merged-chr11-3147041-2	chr11	3146938	3147138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	B3|SINE|B2	23017.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	42.4	41.75	49.06	41.83	83.05	66.16	76.73	81.98	0.98	4.02	0.0	1.25
Merged-chr11-75587673-3	chr11	75587592	75587792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	-387.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	33.52	13.58	27.38	22.52	29.05	27.91	20.93	30.53	29.11	21.59	36.68	21.3
Merged-chr14-105288727-3	chr14	105288641	105288841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	30068.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	123.56	134.57	139.76	162.09	148.5	185.95	139.18	197.08	223.04	187.29	260.79	126.56
Merged-chr1-156442268-3	chr1	156442167	156442367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 6 of 15)	intron (NM_009230, intron 6 of 15)	-21352.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	30.28	23.9	41.07	38.61	15.14	23.52	36.87	43.85	26.36	18.08	33.16	21.62
Merged-chr9-53705713-4	chr9	53705571	53705771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	CpG	561.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	18.17	31.44	13.12	26.55	11.45	28.54	26.24	15.45	24.59	32.13	25.63	15.98
Merged-chr11-59839822-3	chr11	59839722	59839922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011991)	promoter-TSS (NM_011991)	-55.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	39.98	36.72	42.21	29.36	45.41	51.11	24.25	41.55	44.06	46.19	64.82	37.91
Merged-chr15-98762302-3	chr15	98762217	98762417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	675.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	50.07	42.26	39.36	41.83	34.36	32.93	27.24	25.07	47.99	36.65	53.77	31.01
Merged-chr10-19014252-1	chr10	19014152	19014352	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009397, intron 1 of 8)	intron (NM_009397, intron 1 of 8)	1158.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	26.25	25.91	17.11	8.45	15.96	42.65	11.63	14.22	26.75	21.09	29.14	18.17
Merged-chr7-44748455-3	chr7	44748368	44748568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133945)	promoter-TSS (NM_133945)	-77.0	NM_001289839	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	142.94	130.79	170.0	96.93	139.91	195.67	89.02	128.5	190.2	165.69	198.98	111.21
Merged-chr13-85553295-3	chr13	85553198	85553398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-263812.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	71.88	46.78	68.45	100.55	68.32	65.54	77.4	82.01	98.54	72.81	123.11	49.5
Merged-chr10-117910632-3	chr10	117910528	117910728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-14831.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	50.07	63.89	78.15	64.35	54.41	85.61	41.52	61.04	76.12	39.67	66.33	44.48
Merged-chr12-55474375-1	chr12	55474275	55474475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	18272.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	26.65	23.9	24.53	26.14	30.27	35.12	28.23	24.87	22.03	20.59	20.1	15.66
Merged-chr1-36065034-3	chr1	36064936	36065136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3364.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	75.51	87.53	73.59	56.71	96.55	157.1	79.39	45.17	135.71	103.94	99.49	43.86
Merged-chr8-14890121-3	chr8	14890009	14890209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1573.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	107.01	95.08	100.4	102.56	96.55	105.67	94.0	149.69	129.03	101.93	157.28	86.15
Merged-chr6-136938869-3	chr6	136938771	136938971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	656.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	36.34	24.9	26.81	26.14	27.82	27.59	17.61	12.93	54.48	67.78	47.74	26.94
Merged-chr1-54926409-3	chr1	54926296	54926496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081433)	promoter-TSS (NM_001081433)	-9.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	20.19	38.74	19.4	20.91	20.46	23.52	15.94	31.96	39.73	34.14	59.29	21.93
Merged-chr2-157566794-3	chr2	157566681	157566881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016916)	promoter-TSS (NM_016916)	-420.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	58.95	50.31	43.93	32.58	69.55	91.25	57.47	59.16	63.14	72.81	65.32	44.17
Merged-chr17-27056383-3	chr17	27056263	27056463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-941.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	72.68	41.0	69.03	45.05	48.68	39.2	26.24	48.98	36.39	43.68	34.67	24.12
Merged-chr4-43972348-3	chr4	43972241	43972441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-11163.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	52.09	38.74	51.91	46.66	97.37	73.06	48.83	54.34	68.84	89.37	110.55	43.23
Merged-chr6-97441636-3	chr6	97441528	97441728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	17658.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	153.85	104.89	131.21	160.48	175.51	168.7	108.62	149.22	130.99	120.51	140.19	98.37
Merged-chr3-84827952-3	chr3	84827852	84828052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	12375.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	51.69	34.71	48.49	35.8	37.23	25.71	40.52	38.58	45.83	43.18	28.64	24.12
Merged-chr6-52011767-3	chr6	52011668	52011868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	781.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	39.98	19.62	30.8	31.37	36.41	28.22	24.58	33.64	47.99	53.22	38.19	29.76
Merged-chr17-86677546-2	chr17	86677431	86677631	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-76333.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.23	4.28	4.56	6.03	32.32	26.65	38.2	34.68	17.31	20.08	21.61	4.7
Merged-chr8-109694077-3	chr8	109693972	109694172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-778.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	26.65	24.65	40.5	28.56	32.73	42.65	41.85	42.06	60.97	60.75	67.33	54.51
Merged-chr1-191817988-3	chr1	191817900	191818100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3473.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	27.46	27.42	37.08	17.29	31.09	49.54	17.27	34.68	34.42	30.63	77.88	20.05
Merged-chr6-29524336-3	chr6	29524232	29524432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2293.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	99.74	107.15	148.32	148.41	130.91	156.47	161.44	155.61	162.07	141.59	199.49	90.22
Merged-chr15-78258442-3	chr15	78258345	78258545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13634.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	123.97	104.89	130.63	107.39	101.05	155.85	109.62	115.88	141.81	112.47	156.77	79.57
Merged-chr5-139484564-3	chr5	139484467	139484667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-76.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	140.52	129.03	132.92	135.94	153.82	182.81	106.29	129.06	151.84	157.66	140.7	95.55
Merged-chr16-91931626-3	chr16	91931530	91931730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	0.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	67.84	66.65	67.31	62.74	94.5	81.53	31.22	63.7	112.9	84.86	118.59	83.02
Merged-chr5-135149507-3	chr5	135149406	135149606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-205.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	311.73	269.39	339.42	294.01	322.37	411.09	257.1	296.58	315.49	378.59	482.38	197.98
Merged-chr11-80146070-3	chr11	80145979	80146179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3926.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	66.63	59.61	69.03	59.53	86.73	81.84	46.17	64.57	62.55	71.8	73.86	54.2
Merged-chr2-163658487-3	chr2	163658389	163658589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164053)	promoter-TSS (NM_001164053)	31.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	25.44	36.22	17.11	21.32	31.91	22.58	25.91	17.78	27.73	30.13	33.67	19.11
Merged-chr6-57824807-5	chr6	57824709	57824909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	CpG	316.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	22.21	29.18	23.96	36.6	21.68	25.71	36.54	25.63	24.19	35.15	27.13	40.72
Merged-chr8-20424841-3	chr8	20424728	20424928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028428)	promoter-TSS (NR_028428)	-14.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	114.68	106.65	99.26	86.88	164.87	183.75	59.46	37.18	98.93	119.0	128.64	57.33
Merged-chr6-31078593-3	chr6	31078485	31078685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15492.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	61.78	37.73	62.18	39.01	78.14	91.25	74.07	81.28	88.71	69.29	71.35	35.71
Merged-chr2-33353627-3	chr2	33353523	33353723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	17871.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	46.03	37.48	89.56	76.02	41.32	39.51	56.8	89.92	35.8	31.63	58.79	32.58
Merged-chr12-33303128-3	chr12	33303024	33303224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	609.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	125.58	103.13	114.66	115.43	103.91	189.71	114.93	105.28	150.47	141.09	160.29	80.82
Merged-chr1-192770689-3	chr1	192770600	192770800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 1 of 11)	CpG	519.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	56.53	43.26	43.93	47.46	40.09	47.35	28.9	55.51	65.5	46.19	66.33	40.72
Merged-chr18-61486803-3	chr18	61486703	61486903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2196.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	46.44	38.48	75.87	45.05	105.55	87.49	44.51	86.16	49.37	41.17	41.2	41.04
Merged-chr14-34296552-3	chr14	34296454	34296654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13963.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	20.19	17.86	32.52	19.71	25.77	14.74	16.28	26.19	22.82	9.04	19.6	12.53
Merged-chr15-88864023-3	chr15	88863940	88864140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145478, intron 4 of 5)	intron (NM_145478, intron 4 of 5)	1846.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	137.29	127.02	159.73	128.3	165.69	221.7	153.8	142.04	217.14	195.82	229.13	114.66
Merged-chr1-43827928-3	chr1	43827819	43828019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-211.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	202.71	204.49	213.92	240.52	274.51	257.44	248.8	238.32	214.59	251.05	323.1	162.9
Merged-chr5-142821792-3	chr5	142821692	142821892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4405.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	26.25	12.07	23.39	14.08	31.5	24.77	10.3	16.49	16.33	23.1	23.11	16.29
Merged-chr4-126251896-3	chr4	126251792	126251992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	4427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	34.32	35.97	41.07	31.37	54.41	46.1	19.6	29.58	52.91	39.16	58.79	27.88
Merged-chr7-110003212-3	chr7	110003086	110003286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037959, intron 2 of 2)	intron (NR_037959, intron 2 of 2)	3460.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	33.52	14.59	25.1	22.93	40.5	43.9	25.91	47.33	42.68	55.23	53.26	29.45
Merged-chr5-100039961-3	chr5	100039865	100040065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	-29.0	NM_026421	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	75.51	73.7	94.13	77.22	94.09	101.6	58.13	73.79	119.0	133.06	135.67	103.69
Merged-chr7-69985365-2	chr7	69985274	69985474	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	352448.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	6.46	5.53	5.13	2.82	39.27	32.3	23.58	44.86	49.37	30.63	25.63	24.43
Merged-chr11-121236772-1	chr11	121236672	121236872	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-464.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	53.3	26.16	27.38	36.2	49.91	59.58	24.25	32.02	49.96	76.32	72.36	43.54
Merged-chr7-90043654-3	chr7	90043575	90043775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	14516.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	42.4	32.45	75.3	51.08	70.77	53.31	90.35	98.8	92.25	70.29	113.56	56.07
Merged-chr11-6476141-3	chr11	6476045	6476245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-69.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	54.51	42.51	57.62	38.61	45.0	52.99	36.54	48.98	78.48	69.79	85.42	47.62
Merged-chr2-73397120-3	chr2	73397026	73397226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10646.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	23.02	23.39	38.22	25.74	34.36	41.39	41.52	48.81	23.8	29.12	46.23	34.15
Merged-chr4-148164244-3	chr4	148164143	148164343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176848, exon 2 of 6)	exon (NM_176848, exon 2 of 6)	3575.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	26.25	21.13	21.11	24.53	38.46	28.54	19.27	28.29	17.7	22.09	43.72	20.36
Merged-chr15-7931791-1	chr15	7931691	7931891	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	116241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.81	0.5	0.0	2.01	4.91	4.39	10.96	8.16	7.67	2.01	3.52	4.39
Merged-chr16-29945455-3	chr16	29945223	29945423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33801.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	1.62	4.28	1.71	2.82	2.86	2.51	3.32	3.9	2.75	2.51	6.53	2.19
Merged-chr15-97825205-3	chr15	97825098	97825298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	6569.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	66.63	70.43	86.71	71.59	95.32	73.69	56.14	62.47	105.23	93.39	89.44	35.71
Merged-chr10-69252946-3	chr10	69252852	69253052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39758.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	72.68	52.82	62.18	79.23	56.46	55.82	62.78	58.26	76.71	61.76	72.36	60.77
Merged-chr7-114316598-3	chr7	114316506	114316706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-40490.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	20.59	22.13	36.51	30.57	31.09	20.7	31.89	51.87	20.46	21.09	60.8	39.47
Merged-chr9-58269548-3	chr9	58269437	58269637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16373.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	35.94	14.34	29.09	43.04	48.68	35.43	35.87	54.2	39.53	23.6	41.2	22.24
Merged-chr13-117034021-5	chr13	117033912	117034112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8496.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	22.21	20.88	22.82	34.19	18.82	14.74	32.55	24.42	20.85	29.62	19.09	21.3
Merged-chr10-68239847-3	chr10	68239749	68239949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	38877.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	43.21	46.03	38.22	25.74	48.27	69.3	28.23	25.57	75.92	44.69	51.25	26.63
Merged-chr5-44226656-3	chr5	44226563	44226763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-57.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	26.65	23.64	39.36	14.88	56.46	42.65	35.87	38.97	61.37	40.67	78.39	15.98
Merged-chr4-129624456-3	chr4	129624334	129624534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-526.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	57.74	54.33	62.75	73.2	81.82	90.94	49.49	60.42	100.51	67.28	164.31	55.76
Merged-chr5-121838829-3	chr5	121838748	121838948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1989.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	61.38	64.39	79.29	61.13	48.68	66.16	56.47	81.81	68.64	72.81	79.89	58.58
Merged-chr5-90999772-1	chr5	90999672	90999872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27745.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	15.34	8.3	22.82	13.67	7.77	6.59	6.64	13.49	11.21	3.51	15.58	11.59
Merged-chr2-167375320-3	chr2	167375189	167375389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26111.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	145.77	155.7	188.25	182.6	150.96	217.93	138.52	147.45	193.93	260.09	217.57	155.69
Merged-chrX-21567755-3	chrX	21567662	21567862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83138.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	46.44	44.27	55.9	49.07	72.82	56.76	77.73	73.57	74.35	75.32	81.9	45.11
Merged-chr4-136239856-3	chr4	136239739	136239939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008232, intron 17 of 24)	intron (NM_001008232, intron 17 of 24)	-8118.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	55.72	26.91	25.67	28.15	42.96	51.11	17.61	30.2	43.66	38.66	39.7	28.82
Merged-chr12-98283698-3	chr12	98283583	98283783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15048.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	23.42	16.1	23.96	29.36	29.86	25.4	20.59	23.86	33.04	31.63	23.11	15.66
Merged-chr14-69136045-3	chr14	69135937	69136137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35765.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	15.34	17.1	18.83	19.71	26.59	45.47	22.59	21.36	37.57	38.66	44.22	23.49
Merged-chr15-64075846-3	chr15	64075721	64075921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15373.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	115.49	89.54	114.66	108.19	112.91	147.38	100.98	110.38	126.47	132.56	137.68	79.26
Merged-chr9-21852645-3	chr9	21852532	21852732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177030)	promoter-TSS (NM_177030)	3.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	86.01	76.21	67.88	66.36	92.87	116.65	76.73	78.08	89.3	72.3	115.07	48.56
Merged-chr10-77522156-3	chr10	77522052	77522252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6339.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	29.48	32.45	31.38	39.42	47.87	42.33	35.54	58.35	41.7	47.7	63.82	20.68
Merged-chr13-56611971-3	chr13	56611875	56612075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	2389.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	90.05	52.32	76.44	70.38	79.37	124.8	66.43	93.36	98.74	95.4	97.48	52.0
Merged-chrX-71287320-3	chrX	71287208	71287408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 9 of 15)	intron (NM_001358113, intron 9 of 15)	72234.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	35.53	19.62	42.78	22.52	45.0	47.04	23.25	40.99	34.81	37.66	39.7	22.24
Merged-chr4-66793612-3	chr4	66793507	66793707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-33944.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	24.23	28.67	38.22	22.52	42.14	40.14	24.25	44.22	29.5	24.6	25.12	10.65
Merged-chr10-7725975-3	chr10	7725875	7726075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011835)	promoter-TSS (NM_011835)	-25.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	184.94	203.74	181.98	141.98	195.96	259.01	132.54	128.36	228.35	223.44	196.97	108.39
Merged-chr5-52476412-3	chr5	52476313	52476513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4870.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	71.88	66.15	86.71	124.28	81.41	45.78	66.43	118.04	63.14	64.27	89.44	42.29
Merged-chr2-143081913-3	chr2	143081797	143081997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020595)	TTS (NM_020595)	3504.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	73.09	81.75	90.7	121.06	99.41	84.35	74.41	108.34	110.15	103.94	138.18	65.47
Merged-chr13-111805230-4	chr13	111805143	111805343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3750.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	14.94	14.34	33.09	18.5	40.09	50.49	40.86	45.11	38.75	36.65	51.25	33.21
Merged-chr3-95662089-3	chr3	95661974	95662174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3353.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	20.59	17.61	20.54	29.36	20.86	25.71	13.95	30.76	31.47	34.65	60.8	21.93
Merged-chr8-126890830-3	chr8	126890720	126890920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41800.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	25.84	20.12	36.51	22.12	30.68	47.98	28.23	21.11	48.58	27.62	51.25	16.29
Merged-chr12-76962364-3	chr12	76962247	76962447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146176)	promoter-TSS (NM_001146176)	-99.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	205.13	183.62	259.56	226.84	276.14	243.96	229.2	246.31	284.21	270.63	419.57	175.74
Merged-chr8-25597576-3	chr8	25597487	25597687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-100.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	97.72	70.93	90.7	74.81	81.82	96.58	62.12	89.16	135.71	114.98	158.78	76.44
Merged-chr2-26483736-3	chr2	26483614	26483814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13595.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	89.24	99.35	118.65	53.09	119.87	121.98	72.41	72.7	100.9	113.98	104.52	52.63
Merged-chr2-160237010-3	chr2	160236901	160237101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90493.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	29.88	21.13	61.04	71.19	27.82	30.1	33.88	53.22	39.14	20.59	48.74	24.75
Merged-chr11-30954412-3	chr11	30954310	30954510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025745)	promoter-TSS (NM_025745)	12.0	NM_023906	65257.0	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	38.76	44.77	45.64	48.26	46.64	52.37	47.5	67.79	73.76	51.21	96.98	41.35
Merged-chr4-133918581-1	chr4	133918481	133918681	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10-int|LTR|ERVK	-30784.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	15.34	10.04	9.55	9.71
Merged-chr10-60832109-1	chr10	60832009	60832209	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	-528.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	8.08	3.52	1.71	6.44	4.91	7.84	8.3	10.23	3.93	1.51	4.52	8.14
Merged-chr17-26663113-3	chr17	26662991	26663191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13305.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	61.38	44.27	56.48	45.05	64.64	77.45	30.89	56.44	65.1	62.26	71.35	49.81
Merged-chr2-167771769-3	chr2	167771666	167771866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	19.79	17.36	34.8	7.64	26.18	24.15	41.52	44.27	31.67	18.08	38.69	26.63
Merged-chr7-30231890-3	chr7	30231807	30232007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027259)	promoter-TSS (NM_027259)	-167.0	NM_027259	69920.0	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	119.93	111.68	106.68	115.83	92.87	153.65	91.01	120.17	184.89	180.76	195.97	114.66
Merged-chr19-4000308-3	chr19	4000243	4000443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025529)	promoter-TSS (NM_025529)	-237.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	79.55	70.18	71.88	86.47	84.68	118.84	43.85	67.32	62.35	86.86	68.34	59.83
Merged-chr1-92216388-3	chr1	92216280	92216480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36039.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	93.68	74.7	104.96	109.4	95.32	99.09	113.27	95.27	129.42	105.44	114.06	83.64
Merged-chr13-45031041-3	chr13	45030957	45031157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28961.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	21.4	22.39	30.23	22.12	37.64	42.33	17.61	33.25	30.29	28.12	31.15	20.68
Merged-chr2-6459802-3	chr2	6459696	6459896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107060.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	14.13	17.1	50.2	25.34	13.09	31.67	23.92	35.07	40.32	19.08	69.85	32.89
Merged-chr4-43044064-3	chr4	43043951	43044151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2169.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	63.4	42.26	52.48	48.67	49.09	63.97	34.55	71.61	65.1	44.69	63.31	35.4
Merged-chr16-37868917-1	chr16	37868817	37869017	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177093, exon 1 of 4)	exon (NM_177093, exon 1 of 4)	517.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	13.33	12.83	26.81	17.29	27.0	10.35	23.58	20.52	23.6	16.07	25.12	27.25
Merged-chr9-75411687-1	chr9	75411587	75411787	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040719, intron 1 of 3)	MER110A|LTR|ERV1	1503.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	3.23	0.5	1.14	0.0	3.68	4.7	3.99	4.32	30.88	26.61	17.59	5.64
Merged-chr4-43959880-3	chr4	43959782	43959982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	2180.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	95.3	83.26	105.53	88.48	94.91	92.19	75.07	69.14	101.49	68.79	71.35	36.97
Merged-chr4-21847581-3	chr4	21847479	21847679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025669)	promoter-TSS (NM_025669)	-4.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	35.13	34.46	30.8	34.19	38.86	30.42	20.26	32.16	50.75	47.7	74.87	31.64
Merged-chr12-87200301-3	chr12	87200215	87200415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	-86.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	31.5	30.18	21.68	20.11	30.27	22.58	20.26	16.43	27.14	23.6	31.15	22.24
Merged-chr13-74617666-5	chr13	74617586	74617786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22167.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	11.31	9.31	15.97	10.05	10.23	12.23	10.3	9.95	16.13	12.55	34.67	27.57
Merged-chr6-34878148-3	chr6	34878042	34878242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347101)	promoter-TSS (NM_001347101)	-77.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	188.57	151.42	201.37	201.1	173.46	242.39	163.76	199.23	194.52	218.92	267.32	137.52
Merged-chr13-60683466-3	chr13	60683340	60683540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	81229.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	36.75	15.85	42.21	57.92	36.41	19.44	71.08	60.73	69.23	42.18	99.49	51.69
Merged-chr6-84017609-3	chr6	84017535	84017735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-1751.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	25.44	37.98	43.93	31.77	36.41	32.93	26.57	46.01	35.4	26.11	60.3	25.37
Merged-chr16-11385982-3	chr16	11385901	11386101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-19647.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	64.2	61.37	74.73	114.22	71.18	102.54	66.77	83.33	84.18	75.82	99.99	59.52
Merged-chr6-47595113-3	chr6	47595013	47595213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-83.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	130.83	120.73	126.64	130.71	184.91	197.24	127.22	178.18	199.84	177.24	232.65	141.28
Merged-chr1-9857763-3	chr1	9857679	9857879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037759, intron 1 of 16)	RMER13B|LTR|ERVK	9498.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	52.09	35.72	63.32	54.7	47.87	58.64	54.48	41.64	57.83	31.63	52.26	31.01
Merged-chr11-34036512-3	chr11	34036393	34036593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-10435.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	35.53	48.04	33.09	8.04	59.32	88.43	37.87	39.84	101.88	89.37	84.92	49.5
Merged-chr10-39369673-3	chr10	39369562	39369762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-137.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	82.78	57.85	89.56	100.15	113.32	100.66	98.99	156.42	91.26	70.8	143.21	91.47
Merged-chr8-84893897-3	chr8	84893786	84893986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	35.0	NM_001044744	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	116.29	83.26	147.18	109.4	112.09	161.49	88.36	132.65	151.84	132.05	180.89	84.27
Merged-chr1-131252772-3	chr1	131252694	131252894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7616.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	45.23	46.28	34.8	32.58	28.23	43.59	29.56	22.79	48.39	47.2	39.19	27.57
Merged-chr16-95929794-3	chr16	95929721	95929921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040484)	promoter-TSS (NR_040484)	-744.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	21.8	14.34	27.95	26.14	38.46	20.38	21.92	27.31	19.47	18.08	48.74	17.54
Merged-chr12-70946813-3	chr12	70946701	70946901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019785, intron 4 of 12)	intron (NM_019785, intron 4 of 12)	8944.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	24.63	20.37	25.1	28.15	33.55	40.76	33.22	29.64	32.26	27.62	42.71	24.75
Merged-chr12-99393102-3	chr12	99392999	99393199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	CpG	56975.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	62.59	53.07	64.46	54.3	38.05	66.16	50.16	71.22	63.53	56.24	69.85	40.1
Merged-chr12-80938840-3	chr12	80938738	80938938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6561.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	41.99	34.71	62.75	41.83	42.96	34.49	25.91	42.7	59.79	49.21	38.69	35.71
Merged-chr17-47502198-3	chr17	47502130	47502330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	61.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	68.65	88.54	69.6	93.31	73.64	98.15	77.06	59.52	86.15	111.47	81.4	62.65
Merged-chr8-95037203-3	chr8	95037113	95037313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17890.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	34.73	20.88	35.94	19.71	56.05	61.77	38.2	54.17	78.68	40.67	81.9	41.04
Merged-chr7-110630396-3	chr7	110630290	110630490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009627)	TTS (NM_009627)	2733.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	17.77	15.85	28.52	19.31	20.05	15.37	10.96	15.79	16.72	20.08	34.67	13.47
Merged-chr9-65575539-3	chr9	65575442	65575642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	MIR|SINE|MIR	4545.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	26.25	31.69	49.06	46.25	34.36	34.81	45.51	60.9	70.61	42.68	56.78	38.22
Merged-chr9-41179249-3	chr9	41179138	41179338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21176.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	41.19	39.74	39.36	57.92	38.05	63.66	47.5	55.68	19.87	6.03	21.61	11.9
Merged-chr4-101354607-3	chr4	101354515	101354715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	832.0	NR_040640	68400.0	Mm.272098	NR_040640	ENSMUSG00000087361	0610043K17Rik	-	RIKEN cDNA 0610043K17 gene	ncRNA	60.57	43.01	23.96	24.13	25.77	57.38	27.57	46.57	51.53	50.71	62.31	37.28
Merged-chr6-39527472-3	chr6	39527365	39527565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30369.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	62.18	45.02	41.07	47.06	47.05	68.67	48.5	67.88	84.77	58.24	101.0	49.81
Merged-chr1-191894582-3	chr1	191894468	191894668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030669, exon 5 of 5)	non-coding (NR_030669, exon 5 of 5)	-12213.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	82.78	89.04	98.12	118.65	126.82	127.62	118.25	148.79	118.21	87.87	155.77	84.9
Merged-chr9-20878299-3	chr9	20878195	20878395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1415.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	222.49	206.76	249.86	214.37	233.19	344.3	204.29	201.28	328.86	379.09	367.31	191.09
Merged-chr11-29515081-3	chr11	29514980	29515180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026465)	promoter-TSS (NM_026465)	-47.0	NM_001163454	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	66.22	48.04	55.33	66.77	55.64	63.66	43.18	56.24	85.56	65.78	86.93	46.68
Merged-chr11-107470764-3	chr11	107470650	107470850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-30.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	83.18	84.51	116.94	92.1	81.0	100.66	101.98	87.67	103.85	116.99	171.85	80.51
Merged-chr15-59739340-3	chr15	59739221	59739421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55638.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	29.07	27.67	42.21	23.33	38.86	48.29	20.26	38.47	43.86	39.16	32.16	24.43
Merged-chr19-5295533-3	chr19	5295444	5295644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030109)	promoter-TSS (NM_030109)	-89.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	119.12	104.89	119.8	101.35	96.14	123.23	54.48	78.79	152.43	101.43	109.04	71.11
Merged-chr16-8674367-3	chr16	8674259	8674459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2206.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	31.9	48.04	40.5	36.2	41.73	52.99	34.55	52.51	65.69	62.76	65.32	42.6
Merged-chr11-90235424-3	chr11	90235314	90235514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14062.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	41.59	38.48	53.05	30.57	49.5	55.19	49.83	53.02	56.25	54.23	44.22	33.83
Merged-chr13-24103338-3	chr13	24103239	24103439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112125.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	35.53	26.41	34.23	32.18	39.68	62.4	40.19	22.74	43.47	53.73	39.7	17.23
Merged-chr4-134767985-3	chr4	134767870	134768070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145554)	promoter-TSS (NM_145554)	34.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	27.05	36.47	33.66	39.82	31.09	31.04	24.25	19.09	39.34	28.12	34.67	27.88
Merged-chr2-31239327-3	chr2	31239225	31239425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6598.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	29.07	31.94	37.08	41.02	65.87	65.22	59.13	75.2	55.07	46.7	68.84	49.18
Merged-chr10-77033161-3	chr10	77033060	77033260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031196)	promoter-TSS (NM_031196)	-52.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	78.74	50.05	55.9	73.2	61.37	85.29	51.82	62.94	88.12	82.35	85.92	60.46
Merged-chr8-82374671-3	chr8	82374560	82374760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	27926.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	46.84	44.27	51.91	69.18	67.09	74.32	39.53	62.24	74.54	66.78	65.83	28.82
Merged-chr7-100530887-3	chr7	100530778	100530978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6222.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	41.19	44.02	42.21	39.82	43.77	46.72	43.85	37.26	47.4	50.71	40.7	52.0
Merged-chr2-34360211-3	chr2	34360134	34360334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	11811.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	30.28	21.38	27.38	19.31	41.73	20.07	18.27	31.54	36.58	21.59	29.65	16.92
Merged-chr11-98551119-3	chr11	98551006	98551206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166494)	promoter-TSS (NM_001166494)	9.0	NM_001166494	69376.0	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	19.79	12.58	15.97	16.49	33.55	33.24	8.3	19.49	23.8	16.07	27.64	21.3
Merged-chr10-17629911-3	chr10	17629799	17629999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93329.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	20.59	27.17	26.81	24.94	27.41	30.42	28.23	35.58	35.01	21.09	46.23	15.35
Merged-chr7-118170363-3	chr7	118170262	118170462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40737.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	29.88	17.1	35.37	32.18	33.14	41.08	29.9	29.24	39.53	36.65	35.68	19.42
Merged-chr14-102810128-3	chr14	102810042	102810242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172490.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	20.19	13.58	23.39	12.87	25.77	16.93	23.58	24.14	40.12	36.65	57.79	17.23
Merged-chr3-30969379-3	chr3	30969293	30969493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	22.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	41.99	22.89	45.07	39.42	41.73	33.24	42.85	35.89	32.06	41.17	40.7	32.89
Merged-chr12-72085097-2	chr12	72085043	72085243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	170.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	9.69	13.58	10.27	6.84	14.73	10.35	10.63	11.07	19.28	25.11	20.1	19.74
Merged-chr12-103434187-3	chr12	103434080	103434280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026790)	promoter-TSS (NM_026790)	-9.0	NM_026790	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	61.38	35.47	41.07	51.88	78.14	66.16	25.58	60.76	86.35	73.81	103.01	57.01
Merged-chr12-99884501-3	chr12	99884395	99884595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-20.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	72.28	52.57	81.0	63.15	81.82	90.31	34.21	71.08	105.03	93.39	69.34	35.09
Merged-chr13-5714384-3	chr13	5714271	5714471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143721.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	45.63	40.75	58.76	75.21	42.55	42.02	63.78	101.55	74.15	56.24	80.9	51.38
Merged-chr18-60729309-3	chr18	60729207	60729407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1741.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	75.51	88.29	70.74	95.72	82.64	105.36	81.71	89.36	81.43	90.88	111.55	81.14
Merged-chr11-69778159-3	chr11	69778067	69778267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	12255.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	36.75	32.95	47.92	29.36	21.68	39.2	30.56	25.26	39.73	39.16	57.79	20.05
Merged-chr15-99823583-3	chr15	99823492	99823692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-3443.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	123.97	104.13	133.49	137.95	91.64	61.46	47.5	62.61	90.08	68.29	101.0	70.17
Merged-chr19-5912864-3	chr19	5912757	5912957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	14.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	79.95	81.75	85.0	81.65	103.91	104.42	45.51	60.59	101.69	107.95	111.05	70.8
Merged-chr5-140321602-3	chr5	140321497	140321697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	-25.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	108.22	80.99	72.45	70.79	87.96	101.91	62.12	67.82	108.57	99.92	92.46	95.23
Merged-chr14-45351136-3	chr14	45351077	45351277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019637)	promoter-TSS (NM_019637)	-9.0	NM_019637	56291.0	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	95.7	98.35	108.96	92.1	119.05	129.19	121.24	113.5	120.18	119.5	134.67	74.24
Merged-chr16-97851599-8	chr16	97851496	97851696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	254.0	NM_001359078	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	38.76	27.67	38.22	24.53	43.77	40.76	22.26	36.14	71.0	62.76	95.97	35.4
Merged-chr12-103333077-3	chr12	103332980	103333180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 6 of 9)	MIR3|SINE|MIR	18121.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	48.46	47.29	93.55	60.33	47.05	45.15	48.83	74.64	67.86	51.72	54.27	42.6
Merged-chr1-58424094-3	chr1	58424014	58424214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-26.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	68.65	48.04	41.07	41.43	68.32	65.22	20.26	51.81	87.72	64.77	63.31	53.88
Merged-chr2-165318059-3	chr2	165317967	165318167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1716.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	31.9	14.84	33.09	20.91	49.91	32.3	39.86	59.5	31.67	21.09	45.73	25.69
Merged-chrX-140599396-3	chrX	140599308	140599508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 1 of 3)	CpG	1114.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	22.21	21.38	18.83	21.32	19.23	26.97	31.56	25.12	13.57	25.61	28.64	20.99
Merged-chr7-128740519-3	chr7	128740418	128740618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-89.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	40.78	47.79	70.74	48.67	71.18	63.97	34.88	63.84	68.25	80.84	80.9	33.21
Merged-chr6-122598615-3	chr6	122598516	122598716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	RLTR14|LTR|ERV1	3828.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	39.17	36.47	24.53	13.27	30.27	41.71	11.63	11.5	36.98	41.17	47.23	16.92
Merged-chr5-115559865-3	chr5	115559746	115559946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007475, exon 2 of 7)	exon (NM_007475, exon 2 of 7)	379.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	69.86	106.9	56.48	63.15	85.5	145.18	67.1	40.77	95.79	143.1	103.51	52.32
Merged-chr14-54417801-3	chr14	54417708	54417908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253679)	promoter-TSS (NM_001253679)	-106.0	NM_011405	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	85.2	80.99	33.09	31.77	57.68	122.29	50.16	26.52	76.51	82.85	50.25	19.74
Merged-chrX-160766062-3	chrX	160765970	160766170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1943.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	49.67	58.35	37.08	81.65	47.46	76.83	30.23	55.88	85.76	81.34	95.47	48.87
Merged-chr11-98809698-3	chr11	98809588	98809788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138660)	promoter-TSS (NM_138660)	-120.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	140.12	143.12	130.63	137.55	149.32	240.51	123.9	114.17	209.47	217.91	197.98	102.75
Merged-chrM-1390-2	chrM	1297	1497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											52133.25	46639.83	55038.8	51874.11	43814.58	55873.03	43876.13	68097.24	0.0	0.0	0.0	0.0
Merged-chr7-19077681-1	chr7	19077581	19077781	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1481.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	2.42	2.26	7.42	7.24	2.45	4.39	3.65	0.84	35.8	28.12	31.66	24.75
Merged-chr11-83078234-3	chr11	83078143	83078343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13131.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	102.97	77.97	116.94	106.58	98.59	119.47	70.42	104.02	92.25	100.42	115.57	67.98
Merged-chr13-65278766-3	chr13	65278657	65278857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-97.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	33.52	38.48	39.36	58.72	66.68	43.59	43.18	67.65	52.91	55.23	132.66	55.45
Merged-chr10-112163625-3	chr10	112163484	112163684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310675)	promoter-TSS (NM_001310675)	-37.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	31.09	18.36	23.96	37.81	36.82	22.89	24.58	23.38	13.37	7.03	18.59	11.59
Merged-chr4-15080637-1	chr4	15080537	15080737	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178617, intron 3 of 12)	intron (NM_178617, intron 3 of 12)	68494.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	4.85	3.27	11.41	17.29	6.55	21.64	13.62	25.15	0.59	4.02	2.51	0.0
Merged-chr11-69418991-3	chr11	69418878	69419078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5303.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	190.59	167.01	206.51	189.84	220.92	259.32	195.65	192.17	295.82	294.74	346.71	187.65
Merged-chr2-92183335-3	chr2	92183230	92183430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-852.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	25.84	27.67	22.25	22.93	20.86	18.5	19.93	19.93	26.16	20.59	31.15	26.0
Merged-chr2-98665150-3	chr2	98665052	98665252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1197495.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1067.23	1206.33	1182.56	1143.45	949.53	547.5	1068.59	365.55	964.95	939.44	762.77	1600.48
Merged-chr9-114781703-5	chr9	114781605	114781805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133978, exon 1 of 5)	exon (NM_133978, exon 1 of 5)	288.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	32.71	33.96	31.38	26.14	33.14	25.4	26.91	36.25	39.53	60.75	74.87	50.75
Merged-chr11-82004974-3	chr11	82004865	82005065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30612.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	86.01	91.56	129.49	120.26	80.59	112.89	110.61	75.45	112.51	105.94	121.6	78.32
Merged-chr7-143020940-3	chr7	143020832	143021032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110354)	TTS (NR_110354)	15273.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	41.19	39.24	57.05	71.99	37.23	42.33	42.85	46.96	60.58	43.18	73.36	40.1
Merged-chr13-48546654-3	chr13	48546545	48546745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8373.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	223.7	241.22	280.09	261.43	312.96	317.34	202.29	270.23	356.2	363.52	492.43	216.47
Merged-chr5-52189950-4	chr5	52189865	52190065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015537)	promoter-TSS (NR_015537)	581.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	9.69	20.88	13.12	22.52	24.14	42.33	30.89	24.81	27.73	25.11	26.63	24.43
Merged-chr1-89644322-3	chr1	89644225	89644425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	39567.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	41.19	31.69	38.22	26.55	52.37	54.56	31.56	65.52	68.84	48.2	92.96	25.37
Merged-chr2-84811094-3	chr2	84811024	84811224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_024230)	TTS (NM_024230)	11528.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	42.8	40.24	48.49	54.3	42.96	47.04	47.5	48.56	62.74	54.23	42.21	31.95
Merged-chr11-98949811-3	chr11	98949668	98949868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177302, intron 2 of 9)	intron (NM_001177302, intron 2 of 9)	10057.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	59.36	29.18	47.92	34.19	66.68	50.17	38.86	50.19	60.38	47.2	69.85	51.38
Merged-chr4-43562478-3	chr4	43562377	43562577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	106.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	203.51	174.56	175.7	222.01	200.05	239.88	195.98	209.78	208.88	309.8	260.79	173.24
Merged-chr5-136953164-3	chr5	136953074	136953274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163243)	promoter-TSS (NM_001163243)	-101.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	98.12	70.18	61.04	89.69	114.14	135.78	64.77	70.96	99.72	116.49	113.06	52.0
Merged-chr16-92865602-3	chr16	92865499	92865699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39525.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	62.18	40.5	62.75	54.7	90.0	79.02	50.82	84.11	79.07	78.33	69.85	36.03
Merged-chr11-62879402-3	chr11	62879276	62879476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356521)	promoter-TSS (NM_001356521)	-79.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	106.2	136.33	122.65	161.28	119.46	150.51	70.09	104.05	167.77	186.78	185.42	86.46
Merged-chr5-115506628-3	chr5	115506538	115506738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-38.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	54.51	66.4	76.44	76.02	54.0	80.27	50.49	63.93	99.72	95.4	116.07	57.95
Merged-chrX-36088716-3	chrX	36088607	36088807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-23401.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	24.63	34.96	27.38	24.94	52.77	61.77	21.92	20.61	41.3	33.14	42.21	23.18
Merged-chr17-50530340-3	chr17	50530232	50530432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	20785.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	19.38	13.58	23.39	31.37	35.59	43.9	20.93	44.75	23.8	28.62	30.15	16.92
Merged-chr16-93032162-3	chr16	93032037	93032237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-206063.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	41.99	35.47	37.08	34.19	34.36	41.39	15.61	14.94	59.99	39.67	33.67	21.93
Merged-chr3-146111134-2	chr3	146111025	146111225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3089.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	20.59	21.88	27.38	24.94	36.82	53.31	31.89	57.59	3.93	3.51	9.04	3.76
Merged-chr6-124688457-3	chr6	124688335	124688535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	23743.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	15.34	19.87	16.54	22.93	32.73	23.2	18.6	16.74	28.91	14.06	19.09	15.66
Merged-chr3-21806642-3	chr3	21806544	21806744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-270008.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	19.38	17.61	24.53	23.73	53.18	34.18	35.87	46.74	40.52	27.62	35.17	25.37
Merged-chr9-106230165-3	chr9	106230051	106230251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7553.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	37.15	56.34	57.62	49.47	57.68	67.73	35.21	67.29	83.79	81.84	80.9	52.63
Merged-chr12-87266741-3	chr12	87266639	87266839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	11.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	32.3	23.39	21.11	22.52	27.82	31.04	25.91	30.34	36.58	34.65	51.25	36.65
Merged-chr16-91869815-3	chr16	91869720	91869920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	61810.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	146.17	142.36	152.88	127.1	137.87	193.79	142.83	142.94	155.97	175.74	206.52	120.61
Merged-chr11-52004254-3	chr11	52004148	52004348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	27.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	92.87	100.86	79.86	63.95	115.78	134.52	57.47	92.58	124.9	122.01	182.4	71.74
Merged-chr11-90245825-3	chr11	90245742	90245942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3634.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	51.28	33.2	61.04	31.77	51.55	52.37	68.43	61.79	42.68	34.65	36.18	38.85
Merged-chr19-55808008-1	chr19	55807908	55808108	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	(T)n|Simple_repeat|Simple_repeat	66198.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	12.92	6.29	3.42	4.83	8.59	3.14	0.66	6.31	6.88	5.02	4.52	0.94
Merged-chr10-4430565-3	chr10	4430459	4430659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358796, intron 1 of 13)	L2|LINE|L2	-1393.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	27.05	29.43	26.81	35.8	45.0	47.98	35.87	61.54	63.92	51.72	72.36	50.75
Merged-chr3-66985829-3	chr3	66985739	66985939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356273)	promoter-TSS (NM_001356273)	-128.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	30.69	32.45	36.51	39.42	35.59	38.57	49.83	32.55	37.37	39.67	46.73	29.13
Merged-chr7-12949652-3	chr7	12949560	12949760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16178.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	260.04	233.92	252.14	333.83	302.33	314.51	258.43	333.62	332.21	295.74	393.95	173.86
Merged-chr6-70824664-3	chr6	70824561	70824761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19854.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	47.24	30.43	38.79	53.89	70.37	64.6	50.82	77.3	70.61	61.26	88.94	28.19
Merged-chr3-122984587-3	chr3	122984488	122984688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133857)	promoter-TSS (NM_133857)	-141.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	196.65	212.54	185.4	186.22	213.14	224.83	163.1	204.23	263.56	255.07	325.11	165.72
Merged-chr19-6085719-3	chr19	6085624	6085824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024231)	promoter-TSS (NM_024231)	627.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	51.69	46.28	30.8	35.39	59.32	44.84	24.91	29.02	60.58	57.24	87.93	29.13
Merged-chr9-59295479-3	chr9	59295376	59295576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	3904.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	22.21	20.63	21.68	6.44	31.91	61.15	20.93	13.57	38.94	30.63	27.13	5.64
Merged-chr10-121365995-3	chr10	121365881	121366081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	891.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	55.32	56.85	55.9	43.84	57.27	65.22	103.64	70.23	241.34	241.51	262.8	151.93
Merged-chr10-40258586-3	chr10	40258487	40258687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-875.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	71.47	69.17	55.9	84.46	38.46	67.42	47.5	49.71	69.43	45.69	73.36	47.93
Merged-chr4-138014331-3	chr4	138014231	138014431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16506.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	69.45	50.31	70.17	56.31	51.55	52.68	32.22	59.22	20.06	23.6	25.63	21.3
Merged-chr16-10482527-3	chr16	10482420	10482620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	2448.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	49.26	49.8	65.6	57.92	49.5	59.27	51.82	50.24	52.12	41.17	50.75	21.62
Merged-chr9-18292173-3	chr9	18292057	18292257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-110.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	126.79	126.02	116.94	143.18	111.69	164.31	133.2	131.97	212.82	189.8	247.22	102.44
Merged-chr17-10321275-3	chr17	10321184	10321384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037588)	TTS (NR_037588)	1365.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	63.4	61.62	34.23	23.73	43.77	74.32	29.9	34.15	87.13	108.96	60.8	27.88
Merged-chr5-34336981-3	chr5	34336898	34337098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	66.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	20.19	23.39	18.83	19.31	15.96	19.44	16.28	21.28	25.18	23.1	39.7	25.06
Merged-chr7-141480991-3	chr7	141480885	141481085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	4605.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	23.02	24.4	27.38	34.19	34.77	24.77	38.86	30.87	28.91	18.58	41.2	20.05
Merged-chr7-35118478-4	chr7	35118309	35118509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-884.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	10.9	16.85	10.84	21.32	20.05	14.74	12.29	17.3	14.55	10.54	21.1	19.11
Merged-chr11-16988010-4	chr11	16987921	16988121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 5 of 9)	intron (NM_019549, intron 5 of 9)	20697.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	27.46	33.2	18.25	16.89	32.73	79.96	47.83	24.22	55.47	41.17	66.83	19.74
Merged-chr19-29063996-3	chr19	29063856	29064056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3345.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	25.44	30.69	26.24	35.8	23.73	38.88	17.94	19.57	32.85	33.64	26.63	20.99
Merged-chr9-111118658-3	chr9	111118525	111118725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 1 of 13)	CpG	514.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	20.19	13.33	18.83	9.25	24.55	49.86	19.93	22.96	28.72	16.57	32.16	23.81
Merged-chr10-110920159-3	chr10	110920113	110920313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007792)	promoter-TSS (NM_007792)	37.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	121.95	87.28	104.39	84.06	153.0	156.47	101.31	145.57	118.6	96.4	154.26	75.5
Merged-chr9-120571467-3	chr9	120571383	120571583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-34.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	98.12	94.32	99.83	92.51	105.55	110.06	46.84	91.09	169.55	160.17	163.81	113.4
Merged-chr8-83715169-3	chr8	83715097	83715297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	20.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	100.95	121.99	91.27	98.14	129.28	192.85	102.31	121.37	176.43	189.29	227.62	119.35
Merged-chr3-52502382-3	chr3	52502289	52502489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14575.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	42.8	50.05	59.9	49.07	39.68	63.97	53.48	58.04	61.76	53.73	64.32	45.74
Merged-chr2-45276940-3	chr2	45276843	45277043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-159501.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	92.47	63.89	69.03	82.05	81.41	107.24	66.1	84.28	79.66	74.81	59.8	58.27
Merged-chr13-34187741-3	chr13	34187638	34187838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	24774.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	38.76	39.74	65.6	53.49	35.18	43.59	42.52	55.32	31.27	59.25	71.35	31.95
Merged-chr10-60284457-3	chr10	60284342	60284542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-19.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	27.86	26.41	52.48	39.42	38.05	21.32	26.24	43.32	40.12	26.61	33.67	33.83
Merged-chr7-29211473-3	chr7	29211378	29211578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164658, intron 1 of 27)	intron (NM_001164658, intron 1 of 27)	2555.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	125.98	112.43	121.51	114.63	139.91	136.4	117.26	97.74	101.49	89.88	88.94	63.59
Merged-chr7-30422244-3	chr7	30422147	30422347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360907)	promoter-TSS (NM_001360907)	-159.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	211.59	240.71	193.38	125.89	172.23	295.7	104.3	74.64	295.82	260.09	229.13	143.48
Merged-chr16-17132443-3	chr16	17132343	17132543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-60.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	198.26	188.9	235.6	246.55	210.28	260.27	214.25	270.09	228.75	206.37	292.95	172.92
Merged-chr10-44638850-3	chr10	44638751	44638951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-180103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	33.92	47.79	42.21	54.3	76.5	52.05	28.57	52.32	45.24	44.69	67.33	41.66
Merged-chr19-44555386-3	chr19	44555279	44555479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347447)	promoter-TSS (NM_001347447)	63.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	23.02	23.64	19.4	28.15	33.55	28.22	14.95	22.37	23.41	22.59	22.11	11.28
Merged-chr7-19935479-5	chr7	19935340	19935540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-14297.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	18.98	24.9	30.8	26.95	25.77	25.09	26.24	30.45	35.6	32.13	42.21	31.64
Merged-chr3-65655202-3	chr3	65655092	65655292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4096.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	26.25	19.37	26.24	15.28	29.86	26.03	38.2	57.5	17.31	19.58	25.63	15.98
Merged-chr11-117969245-3	chr11	117969127	117969327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007707, exon 1 of 2)	5' UTR (NM_007707, exon 1 of 2)	139.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	80.36	80.99	81.0	60.33	99.41	134.84	40.52	50.5	114.08	123.02	85.42	42.92
Merged-chr11-48856634-3	chr11	48856516	48856716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	31.5	20.12	49.63	32.18	30.68	29.16	16.94	22.65	38.75	43.68	29.14	28.19
Merged-chr8-35597260-3	chr8	35597184	35597384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-8264.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	23.42	24.65	32.52	35.8	28.23	26.65	28.23	50.41	39.93	33.14	50.75	21.3
Merged-chr10-127737175-3	chr10	127737078	127737278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2360.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	63.8	54.83	46.78	89.29	63.82	84.98	58.46	55.82	75.72	55.73	73.86	62.34
Merged-chrX-13846771-3	chrX	13846687	13846887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284504)	promoter-TSS (NM_001284504)	-231.0	NM_009806	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	54.11	58.61	66.74	53.49	59.73	61.46	41.52	70.26	74.15	68.29	104.01	52.0
Merged-chr12-112849517-1	chr12	112849417	112849617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11399.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	12.92	9.81	5.7	4.83	6.14	8.78	0.0	2.5	7.28	8.54	6.53	5.01
Merged-chr2-51147898-3	chr2	51147822	51148022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028810, intron 2 of 4)	CpG	1189.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	18.17	28.93	24.53	27.35	24.55	25.71	30.89	19.09	24.98	25.11	29.65	17.23
Merged-chr11-32565353-3	chr11	32565255	32565455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	32089.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	197.05	151.67	158.59	173.75	166.51	182.81	193.66	202.57	166.0	172.72	167.83	104.94
Merged-chr5-112324757-3	chr5	112324658	112324858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1611.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	41.19	56.09	53.05	47.86	142.78	147.69	103.31	117.2	86.74	74.81	79.89	59.52
Merged-chr11-69409538-3	chr11	69409438	69409638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4137.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	127.6	153.68	160.87	132.73	118.23	185.95	86.03	101.05	190.59	196.32	170.84	112.78
Merged-chr11-103979613-3	chr11	103979541	103979741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	12770.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	48.46	53.83	40.5	36.2	47.87	91.56	52.82	51.17	55.07	50.71	49.24	31.95
Merged-chr9-69989413-3	chr9	69989313	69989513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016787)	promoter-TSS (NM_016787)	-53.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	99.74	71.69	68.45	83.26	74.87	80.9	34.55	65.36	109.56	148.62	103.51	74.87
Merged-chr3-5860685-3	chr3	5860587	5860787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284439.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	584.29	844.38	567.03	591.23	203.32	203.2	184.35	117.87	190.98	199.84	237.17	334.26
Merged-chr12-16866018-3	chr12	16865913	16866113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28965.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	39.98	37.48	58.76	52.29	50.73	68.05	29.9	65.44	63.14	47.2	109.04	29.13
Merged-chr13-110560764-3	chr13	110560670	110560870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165726.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	28.27	42.26	52.48	50.68	42.14	50.8	56.47	58.65	62.35	52.72	67.33	36.97
Merged-chr8-108694007-3	chr8	108693915	108694115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20629.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	17.77	19.37	26.24	32.98	60.96	61.15	52.15	64.21	36.39	39.67	75.37	40.41
Merged-chr13-17018100-2	chr13	17018005	17018205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138654, intron 12 of 13)	Lx5b|LINE|L1	676660.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	69.05	49.55	67.31	108.59	49.91	32.3	48.83	71.89	0.39	0.5	0.0	0.0
Merged-chr18-88824730-3	chr18	88824629	88824829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	69478.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	69.86	45.02	49.06	58.72	45.0	67.73	52.15	93.17	66.28	58.75	86.43	36.97
Merged-chr4-137356923-3	chr4	137356817	137357017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	842.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	85.2	68.16	71.88	65.56	63.41	141.11	71.08	85.4	110.15	96.4	96.98	54.82
Merged-chr2-144010513-3	chr2	144010470	144010670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	CpG	693.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	60.57	80.49	62.75	64.75	53.18	90.62	65.44	75.53	141.62	137.58	145.22	75.81
Merged-chr1-92972178-3	chr1	92972093	92972293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-926.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	82.78	41.25	127.21	133.93	176.73	108.81	181.37	223.46	139.45	118.5	211.55	109.64
Merged-chrX-74085772-3	chrX	74085671	74085871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081979)	promoter-TSS (NM_001081979)	-81.0	NM_001081979	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	134.87	138.09	132.35	140.77	162.41	164.94	138.85	162.28	168.76	149.63	250.24	110.9
Merged-chr2-26647052-3	chr2	26646962	26647162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6818.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	45.63	30.18	44.5	26.95	54.0	70.87	33.88	55.4	62.55	65.27	72.36	41.66
Merged-chr9-44418108-3	chr9	44418023	44418223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201372)	promoter-TSS (NM_201372)	-54.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	44.42	41.25	34.8	43.44	59.32	86.55	40.19	47.24	75.13	83.85	75.87	40.1
Merged-chr8-83955510-3	chr8	83955411	83955611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-183.0	NM_024184	66929.0	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	262.47	238.2	290.93	254.19	306.42	351.52	222.22	275.58	356.79	406.71	416.56	202.06
Merged-chr17-17900961-3	chr17	17900866	17901066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13142.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	165.96	172.05	155.73	129.11	188.6	263.09	154.13	173.22	222.06	219.42	290.43	97.74
Merged-chr5-90366512-3	chr5	90366455	90366655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	-370.0	NM_198010	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	114.68	110.92	104.96	122.27	100.23	106.93	57.8	90.2	125.68	172.22	160.79	111.21
Merged-chr3-153262172-3	chr3	153262073	153262273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36476.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	16.15	16.85	19.97	18.5	27.82	26.97	26.57	36.53	35.6	37.16	36.18	14.41
Merged-chr9-57075345-3	chr9	57075268	57075468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152107, exon 2 of 2)	non-coding (NR_152107, exon 2 of 2)	681.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	31.5	31.19	33.09	30.57	34.77	39.51	14.62	31.96	43.07	45.19	45.22	17.86
Merged-chr5-115653125-3	chr5	115653003	115653203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151603, exon 1 of 3)	non-coding (NR_151603, exon 1 of 3)	483.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	220.07	208.27	206.51	205.93	207.42	287.23	196.98	183.34	245.47	262.1	287.92	148.8
Merged-chr3-127492852-1	chr3	127492752	127492952	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	MLT1G1|LTR|ERVL-MaLR	6263.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.0	0.0	0.4	0.0	0.0	0.66	0.73	36.58	29.62	40.7	20.05
Merged-chr17-47688106-3	chr17	47687995	47688195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290337)	TTS (NM_001290337)	291.0	NM_025365	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	105.79	87.53	94.13	76.42	102.68	107.24	54.81	104.66	161.68	128.04	140.19	82.7
Merged-chr16-91485076-3	chr16	91484961	91485161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-154.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	232.99	177.83	225.33	218.8	220.51	296.95	161.77	213.76	270.05	285.7	268.83	148.8
Merged-chr4-107577650-3	chr4	107577532	107577732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	105957.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	20.19	20.88	35.94	40.62	20.86	26.03	19.27	31.88	22.23	31.63	40.2	28.82
Merged-chr6-97396963-6	chr6	97396849	97397049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62337.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	20.59	25.91	35.37	28.56	30.27	29.48	22.26	22.68	27.14	36.65	44.72	36.03
Merged-chr5-72204709-3	chr5	72204589	72204789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1346.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	29.88	32.45	17.11	3.22	15.96	56.44	24.91	20.02	24.39	23.6	17.59	16.29
Merged-chr2-132221746-3	chr2	132221669	132221869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26019.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	49.67	31.19	51.91	35.39	49.09	59.89	59.46	67.88	66.48	53.73	69.85	46.99
Merged-chr11-70795708-3	chr11	70795601	70795801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 3 of 4)	MTB|LTR|ERVL-MaLR	16860.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	18.57	11.57	20.54	14.88	37.23	60.21	31.89	18.53	36.98	41.17	43.21	25.06
Merged-chr19-11929801-1	chr19	11929701	11929901	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 9 of 18)	intron (NM_172635, intron 9 of 18)	6073.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.81	1.51	0.0	0.0	0.82	0.0	0.66	0.2	18.49	28.62	24.12	26.31
Merged-chr2-60120876-3	chr2	60120756	60120956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	4884.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	49.26	51.06	57.05	43.44	44.59	75.57	41.19	68.22	74.94	46.19	62.81	33.83
Merged-chr18-88820316-3	chr18	88820217	88820417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73890.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	47.24	35.21	54.19	64.35	79.78	68.67	114.6	118.01	54.09	45.19	90.95	41.98
Merged-chr8-119394846-3	chr8	119394751	119394951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-41.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	106.2	96.34	91.27	94.11	128.87	171.52	109.62	117.53	129.42	137.58	161.3	106.2
Merged-chr16-31233582-3	chr16	31233422	31233622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32284.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	25.44	26.91	25.1	21.72	34.77	31.67	42.52	35.52	38.75	42.68	32.16	28.51
Merged-chr1-86525400-3	chr1	86525294	86525494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1163.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	59.36	50.31	74.16	43.44	99.41	95.95	45.18	52.96	100.9	107.45	127.13	57.95
Merged-chr1-136142552-2	chr1	136142462	136142662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	11172.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	16.56	22.13	33.09	25.34	29.86	37.32	25.24	31.12	45.04	43.18	68.34	34.46
Merged-chr2-174614137-3	chr2	174614034	174614234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29400.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	47.24	37.73	45.64	69.58	49.09	39.82	49.16	74.78	54.29	33.64	47.74	32.58
Merged-chr4-144892712-3	chr4	144892619	144892819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-108.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	53.3	54.08	51.34	86.07	47.05	81.53	55.14	55.77	75.92	70.8	79.39	46.36
Merged-chr19-8786341-3	chr19	8786243	8786443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177798)	promoter-TSS (NM_001177798)	-27.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	116.7	72.69	78.72	82.45	106.78	134.52	72.75	100.6	134.53	157.66	139.69	58.27
Merged-chr19-9914573-3	chr19	9914481	9914681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-15048.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	79.14	95.58	63.32	114.63	99.41	87.8	61.78	103.68	102.08	97.41	93.46	54.82
Merged-chr11-34047129-3	chr11	34047049	34047249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010696, exon 1 of 21)	5' UTR (NM_010696, exon 1 of 21)	221.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	59.36	80.49	51.34	46.66	69.14	109.12	53.15	44.22	98.15	69.29	88.44	46.99
Merged-chr8-117268210-3	chr8	117268114	117268314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	11195.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	18.98	17.61	19.97	14.08	33.96	29.48	12.95	17.41	36.98	28.12	42.21	18.8
Merged-chr1-138323266-3	chr1	138323163	138323363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49525.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	119.93	130.29	107.25	59.53	96.96	196.61	72.75	78.76	146.14	153.14	134.16	57.64
Merged-chr7-122920192-3	chr7	122920088	122920288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50271.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	87.22	76.72	82.72	117.84	58.5	68.67	65.44	77.92	80.64	78.83	112.05	63.59
Merged-chr1-149842036-3	chr1	149841939	149842139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	80400.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	23.02	45.02	30.8	24.53	60.14	72.75	28.9	47.3	71.59	59.75	87.93	45.11
Merged-chr1-35995424-3	chr1	35995335	35995535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72965.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	31.09	36.97	51.91	49.47	49.91	47.98	49.16	43.43	57.24	47.7	57.79	30.39
Merged-chr16-14361966-1	chr16	14361866	14362066	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	408.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	24.23	33.96	7.99	13.67	19.23	49.23	17.94	8.66	39.93	53.22	35.68	16.92
Merged-chr8-72144557-3	chr8	72144466	72144666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001491, intron 3 of 7)	intron (NM_001001491, intron 3 of 7)	9274.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	29.07	18.86	23.96	21.72	19.64	29.16	20.59	24.39	20.65	22.09	36.18	12.22
Merged-chr1-133661413-3	chr1	133661259	133661459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	40.0	NM_144530	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	48.05	35.21	38.22	46.66	42.96	59.27	37.54	41.72	72.38	76.82	70.85	34.15
Merged-chr13-34236960-3	chr13	34236863	34237063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	RSINE1|SINE|B4	73999.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	30.69	24.9	43.35	33.78	15.96	23.83	16.28	27.73	33.63	19.08	50.75	19.11
Merged-chr9-66856113-1	chr9	66856013	66856213	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21407.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	2.02	4.02	7.99	6.44	12.27	5.02	2.33	10.12	5.51	7.53	12.56	5.33
Merged-chr9-107982816-3	chr9	107982710	107982910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023738, intron 21 of 23)	intron (NM_023738, intron 21 of 23)	3106.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	37.55	38.99	78.72	51.48	53.59	58.01	42.19	46.88	48.39	36.65	73.86	34.77
Merged-chr2-127137271-3	chr2	127137172	127137372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3318.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	29.88	26.16	34.8	24.13	39.27	31.36	23.92	31.93	42.29	21.59	31.66	20.99
Merged-chr2-25194589-3	chr2	25194477	25194677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	2236.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	31.09	18.86	34.8	32.58	31.09	38.26	17.94	29.64	54.48	43.68	40.2	30.7
Merged-chr11-70432481-3	chr11	70432374	70432574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-106.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	147.79	144.63	159.73	129.51	168.96	200.37	121.91	120.53	237.01	232.98	254.76	127.81
Merged-chr10-45577877-3	chr10	45577786	45577986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172473)	promoter-TSS (NM_172473)	57.0	NM_172473	209462.0	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	16.96	29.18	18.83	42.23	49.91	35.75	28.9	60.59	32.06	34.14	46.73	26.94
Merged-chr5-93193600-3	chr5	93193505	93193705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12890.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	18.57	14.84	25.67	28.15	32.32	34.49	28.57	38.05	26.75	34.65	22.61	31.01
Merged-chr11-117991926-3	chr11	117991843	117992043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	5086.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	114.27	99.86	127.78	117.44	114.96	118.84	75.4	96.95	104.24	107.95	112.56	62.34
Merged-chr8-94551831-3	chr8	94551739	94551939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153507, intron 4 of 15)	intron (NM_153507, intron 4 of 15)	18811.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	19.38	17.86	23.96	21.32	47.87	26.65	16.61	36.53	31.08	33.64	45.22	18.17
Merged-chr3-113630005-4	chr3	113629877	113630077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026043, exon 1 of 15)	exon (NM_026043, exon 1 of 15)	172.0	NM_001287015	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	84.39	111.43	91.27	112.62	89.18	138.6	142.83	121.85	108.77	128.54	112.05	100.87
Merged-chr12-31351051-1	chr12	31350951	31351151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007861, intron 1 of 13)	CpG	420.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	32.3	23.14	34.8	26.14	34.36	34.81	36.21	33.87	28.91	43.68	28.14	24.12
Merged-chr4-141477821-3	chr4	141477705	141477905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33132.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	65.82	46.03	92.98	65.96	75.28	81.84	49.16	88.01	121.75	112.47	130.14	68.92
Merged-chr1-135313788-3	chr1	135313692	135313892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360858)	promoter-TSS (NM_001360858)	-55.0	NM_001360858	21854.0	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	Tim17a|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	59.76	58.35	39.93	60.73	99.0	125.12	70.42	104.69	144.96	101.93	167.83	71.74
Merged-chr10-77972343-1	chr10	77972243	77972443	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2471.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	10.9	12.58	18.25	5.23	7.77	19.44	5.31	18.06	18.29	23.1	26.13	17.86
Merged-chr7-4427464-3	chr7	4427372	4427572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290409, exon 6 of 6)	3' UTR (NM_001290409, exon 6 of 6)	18185.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	33.92	29.68	27.38	37.0	34.36	42.96	15.28	28.88	67.07	34.65	60.3	28.51
Merged-chr13-55471626-3	chr13	55471534	55471734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001030296, intron 1 of 2)	CpG	6142.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	96.91	88.79	70.74	38.21	59.32	116.34	42.52	37.07	96.77	100.42	87.93	52.94
Merged-chr9-72958798-3	chr9	72958690	72958890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	5.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	40.78	41.75	39.36	41.02	44.59	42.96	30.89	35.94	58.61	60.25	84.92	38.85
Merged-chr6-86365571-3	chr6	86365474	86365674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-109.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	126.79	155.19	146.61	145.6	163.23	202.25	121.24	148.74	199.25	218.42	243.2	140.66
Merged-chr9-116175268-3	chr9	116175177	116175377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	86.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	111.45	139.35	96.41	98.14	114.96	169.64	92.34	111.42	121.36	146.11	170.34	83.02
Merged-chr17-44777616-3	chr17	44777511	44777711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178652, intron 1 of 11)	CpG	445.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	46.84	50.05	42.21	53.09	55.23	59.58	48.5	62.52	63.73	69.29	77.38	35.4
Merged-chr7-24208133-3	chr7	24208034	24208234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019940)	promoter-TSS (NM_019940)	15.0	NM_019940	56707.0	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	32.71	27.42	35.94	31.77	23.32	39.51	18.93	42.7	38.35	31.63	52.26	18.8
Merged-chr1-40356141-2	chr1	40356035	40356235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	31546.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	13.73	10.82	9.13	28.15	16.77	18.81	14.62	15.39	6.88	7.53	9.04	9.08
Merged-chrX-21566854-3	chrX	21566759	21566959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82235.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	45.63	37.98	37.65	52.69	59.73	63.34	48.16	69.76	61.17	63.27	81.9	43.23
Merged-chr10-67226198-3	chr10	67226101	67226301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001242396, exon 9 of 25)	exon (NM_001242396, exon 9 of 25)	40451.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	56.13	39.49	62.18	46.66	44.59	61.46	51.15	76.12	56.25	46.19	82.41	36.34
Merged-chr4-154933668-1	chr4	154933568	154933768	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5591.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.42	3.27	5.13	2.41	4.09	5.33	7.64	0.56	30.09	17.57	23.11	13.47
Merged-chr15-81190886-3	chr15	81190785	81190985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	32.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	221.68	198.46	253.28	233.28	251.6	267.79	184.35	215.19	260.81	244.53	331.14	142.54
Merged-chr8-85084821-3	chr8	85084721	85084921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010764, intron 3 of 23)	intron (NM_010764, intron 3 of 23)	1552.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	24.63	19.62	37.65	32.58	39.27	33.87	32.55	45.67	41.5	35.65	49.75	22.24
Merged-chr16-8637599-3	chr16	8637485	8637685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	116.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	66.22	49.8	42.78	83.26	85.09	90.62	57.13	77.22	113.49	119.5	111.55	89.28
Merged-chr4-138283016-3	chr4	138282924	138283124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190978, intron 6 of 11)	intron (NM_001190978, intron 6 of 11)	20773.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	41.59	42.51	39.36	39.01	48.68	70.55	14.95	28.88	55.66	46.19	57.28	26.63
Merged-chr9-54734530-3	chr9	54734395	54734595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023191)	promoter-TSS (NM_023191)	54.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	104.58	117.46	118.65	101.35	106.78	104.73	94.34	97.88	117.03	104.94	112.56	74.56
Merged-chr8-105900402-3	chr8	105900299	105900499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173432)	promoter-TSS (NM_173432)	-75.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	67.84	60.37	63.32	55.91	82.23	92.5	41.85	72.73	90.67	97.41	82.91	77.06
Merged-chr15-97163233-3	chr15	97163125	97163325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155278, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	4019.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	39.98	18.61	51.34	51.48	43.77	42.65	51.82	60.08	49.76	53.73	51.76	29.45
Merged-chr4-19872150-2	chr4	19872000	19872200	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50466.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.86	4.02	6.28	11.66	17.18	14.74	12.95	17.38	10.82	7.03	11.56	4.07
Merged-chr13-64248987-3	chr13	64248900	64249100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122989)	promoter-TSS (NM_001122989)	300.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	16.15	17.61	11.98	16.49	36.41	26.65	15.61	28.96	38.16	45.19	28.14	18.17
Merged-chr4-135206436-3	chr4	135206328	135206528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	66332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	49.67	46.28	45.64	41.83	39.27	69.3	35.21	47.47	43.27	60.25	51.76	33.21
Merged-chr1-36309787-3	chr1	36309718	36309918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	2085.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	17.36	16.85	40.5	23.73	41.73	21.32	30.89	47.36	44.06	6.53	41.2	13.47
Merged-chr7-4526512-3	chr7	4526406	4526606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033548, exon 9 of 12)	exon (NM_001033548, exon 9 of 12)	-3978.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	25.84	31.44	23.96	16.49	63.0	54.56	31.22	51.11	64.12	70.29	99.49	48.87
Merged-chr16-91607177-3	chr16	91607068	91607268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9488.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	119.52	86.78	105.53	102.56	108.41	125.12	73.41	96.51	118.6	103.94	130.14	79.57
Merged-chr1-107513670-3	chr1	107513581	107513781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2171.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	29.88	26.41	33.09	32.98	46.64	36.69	26.57	46.23	35.4	44.19	28.64	21.93
Merged-chr15-64189444-3	chr15	64189344	64189544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	123229.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	34.73	24.65	17.11	20.91	31.09	42.65	22.92	38.47	35.6	43.18	33.16	18.48
Merged-chr11-72217261-3	chr11	72217130	72217330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1638.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	30.28	22.39	33.09	27.35	44.59	40.76	37.2	50.27	27.14	23.1	35.17	26.31
Merged-chr3-146445012-3	chr3	146444924	146445124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5443.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	22.21	29.43	34.23	39.82	43.77	36.69	49.49	53.13	43.86	47.2	76.38	49.18
Merged-chr1-93235780-3	chr1	93235690	93235890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172463)	promoter-TSS (NM_172463)	-107.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	56.13	42.76	50.2	64.75	54.82	52.99	51.82	67.96	54.88	31.13	59.8	36.03
Merged-chr16-38731112-3	chr16	38731008	38731208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11151.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	25.44	17.36	25.67	53.09	25.77	37.94	14.28	29.55	43.66	24.1	62.31	17.86
Merged-chr11-105506515-3	chr11	105506412	105506612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49777.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	51.28	26.41	55.33	45.85	44.18	44.84	40.52	44.72	62.55	48.2	45.73	27.25
Merged-chr1-151571448-3	chr1	151571353	151571553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	80.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	47.24	41.0	45.07	36.6	36.41	62.09	30.89	25.15	33.04	37.16	57.28	17.23
Merged-chr6-129388382-3	chr6	129388261	129388461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2487.0	NM_001204223	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	16.56	11.07	32.52	29.76	41.32	28.22	44.51	59.5	19.67	17.57	39.19	19.11
Merged-chr12-112617413-3	chr12	112617330	112617530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2617.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	77.53	75.21	83.29	77.22	109.23	120.73	63.11	107.86	100.31	109.96	125.62	55.76
Merged-chr10-81138323-3	chr10	81138221	81138421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2050.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	49.26	49.05	28.52	37.0	60.14	75.26	41.85	49.6	67.86	73.81	62.81	30.07
Merged-chr4-72199188-3	chr4	72199155	72199355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1638.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	49.26	40.75	51.34	56.71	55.23	74.0	58.13	66.45	67.07	69.29	94.97	47.3
Merged-chr13-113490696-3	chr13	113490585	113490785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12159.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	57.34	48.54	78.15	71.59	81.0	70.24	84.37	88.12	80.45	59.25	125.12	48.56
Merged-chr19-4333992-3	chr19	4333889	4334089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27767.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	83.18	76.72	142.04	83.26	121.5	95.01	69.42	93.79	89.3	67.28	91.45	52.0
Merged-chr7-16313005-4	chr7	16312876	16313076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 2 of 3)	intron (NM_133234, intron 2 of 3)	3393.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	21.0	33.7	19.4	21.72	20.86	43.59	34.21	20.83	50.55	49.71	41.2	33.21
Merged-chr11-32226485-3	chr11	32226377	32226577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-28.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	48.46	36.22	58.19	53.09	65.87	77.77	34.55	68.92	67.07	63.27	89.94	43.23
Merged-chr15-81845888-3	chr15	81845789	81845989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12437.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	142.94	118.47	142.04	125.49	189.01	273.44	160.11	211.21	277.13	259.59	297.97	140.34
Merged-chr4-105225796-3	chr4	105225705	105225905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 5 of 5)	L2c|LINE|L2	68458.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	68.24	63.89	86.71	94.52	57.27	103.48	72.41	85.35	112.9	111.47	141.7	61.71
Merged-chr6-87914094-3	chr6	87913999	87914199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017477)	TTS (NM_017477)	123.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	25.84	37.23	26.24	35.39	31.5	32.61	32.88	30.9	29.5	24.1	32.16	23.49
Merged-chrX-48204641-3	chrX	48204555	48204755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172465, intron 2 of 9)	intron (NM_172465, intron 2 of 9)	4047.0	NM_172465	208884.0	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	33.92	31.44	29.66	30.97	24.55	22.58	31.22	38.33	34.22	24.1	41.71	18.8
Merged-chr5-38560779-3	chr5	38560676	38560876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	819.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	80.36	91.81	78.72	62.74	76.91	89.68	51.15	76.88	102.67	98.41	115.57	66.1
Merged-chr6-31453697-1	chr6	31453597	31453797	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	54869.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	7.27	2.52	5.13	4.83	5.32	3.76	12.29	10.99	6.1	6.53	14.57	3.13
Merged-chr3-19084529-2	chr3	19084435	19084635	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78560.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	4.44	7.8	3.99	6.44	7.36	4.08	14.95	14.89	13.96	6.53	31.15	18.48
Merged-chr19-11770375-3	chr19	11770265	11770465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025606)	promoter-TSS (NM_025606)	-50.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	23.02	19.37	21.11	16.49	18.0	22.89	6.64	16.85	23.41	33.14	26.63	20.68
Merged-chr13-75707394-3	chr13	75707285	75707485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-99.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	227.74	212.54	267.54	237.3	268.78	304.79	230.19	336.03	333.19	301.77	454.24	217.41
Merged-chr17-34398828-3	chr17	34398730	34398930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	10.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	34.73	46.28	62.18	40.62	37.64	50.17	19.6	22.96	75.92	69.79	73.86	35.4
Merged-chr11-72689958-3	chr11	72689827	72690027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-75.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	50.47	37.73	33.09	48.26	58.09	42.65	35.54	29.33	65.3	77.83	72.86	34.46
Merged-chr12-24708591-3	chr12	24708485	24708685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009104, exon 2 of 10)	exon (NM_009104, exon 2 of 10)	331.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	23.82	28.17	22.82	27.75	22.91	24.15	23.58	26.61	34.03	14.56	42.71	27.88
Merged-chr17-56256050-3	chr17	56255911	56256111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-782.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	140.52	130.54	123.79	108.19	138.28	168.08	86.36	146.38	155.97	148.62	155.77	87.09
Merged-chr6-113077295-3	chr6	113077184	113077384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	-40.0	NR_027008	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	160.31	163.74	150.03	133.93	160.37	227.97	140.51	131.52	212.62	233.98	249.73	109.64
Merged-chr2-26445409-3	chr2	26445302	26445502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-186.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	232.18	223.11	206.51	220.0	227.05	333.64	173.39	169.37	297.39	343.44	337.67	176.68
Merged-chr17-53587836-3	chr17	53587734	53587934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190846, intron 1 of 17)	L2a|LINE|L2	3708.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	21.4	16.1	16.54	18.1	23.32	19.76	23.25	17.41	36.39	18.08	20.6	20.36
Merged-chr17-55944959-1	chr17	55944859	55945059	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	300.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	13.33	15.85	19.4	18.5	11.45	16.93	6.31	6.7	20.26	36.15	28.14	18.8
Merged-chr14-101515679-1	chr14	101515579	101515779	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	93512.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	1.21	1.26	0.0	4.42	4.5	3.76	10.3	8.36	4.72	3.01	3.01	1.88
Merged-chr17-6827417-3	chr17	6827348	6827548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44668.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	31.09	24.9	21.68	21.72	27.82	57.38	40.19	36.36	67.27	51.21	58.29	28.51
Merged-chr12-55572349-3	chr12	55572244	55572444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7139.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	51.28	37.48	57.05	53.09	27.82	40.14	29.23	44.19	47.21	34.14	33.67	23.81
Merged-chr3-27270327-3	chr3	27270244	27270444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46733.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	134.87	126.77	74.16	61.54	126.0	225.77	118.92	76.99	166.79	204.36	144.71	66.73
Merged-chr10-7589813-3	chr10	7589745	7589945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359742)	promoter-TSS (NM_001359742)	45.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	75.91	66.65	58.76	55.1	101.05	113.51	77.4	85.57	101.69	106.45	125.12	80.51
Merged-chr6-17281207-3	chr6	17281101	17281301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277756)	promoter-TSS (NM_001277756)	16.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	16.96	16.6	17.11	19.31	23.73	19.76	21.59	28.79	24.98	22.59	28.14	17.23
Merged-chr19-10182903-3	chr19	10182841	10183041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	53.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	81.57	81.5	84.43	82.45	82.23	87.8	73.74	67.63	67.27	59.75	92.96	55.45
Merged-chr14-72709987-3	chr14	72709901	72710101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	2.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	50.88	53.58	48.49	32.58	46.64	29.16	27.57	33.08	59.4	47.2	64.82	25.69
Merged-chr10-42276785-3	chr10	42276688	42276888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019740)	promoter-TSS (NM_019740)	-46.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	138.1	123.75	139.19	123.07	123.96	178.42	105.96	178.26	198.65	179.25	223.6	108.7
Merged-chr11-115062191-3	chr11	115062098	115062298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172050)	promoter-TSS (NM_172050)	-159.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	20.59	15.85	41.64	28.15	19.23	15.99	16.61	18.17	20.46	20.08	28.14	24.43
Merged-chr7-13034718-3	chr7	13034550	13034750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168469)	TTS (NM_001168469)	127.0	NM_001360733	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	39.57	44.52	36.51	56.31	49.5	69.61	54.81	62.58	78.28	59.75	96.98	46.99
Merged-chr3-116006873-3	chr3	116006778	116006978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163515)	promoter-TSS (NM_001163515)	528.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	18.17	33.7	23.96	18.1	29.05	31.67	29.9	21.87	39.53	24.1	46.23	16.92
Merged-chr7-19308133-5	chr7	19308045	19308245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347586, intron 1 of 4)	intron (NM_001347586, intron 1 of 4)	1900.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	82.37	58.61	50.2	53.09	62.59	57.38	26.91	38.86	67.27	87.37	62.81	38.85
Merged-chr11-46454861-3	chr11	46454762	46454962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134250)	promoter-TSS (NM_134250)	-69.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	43.61	21.38	35.37	26.95	45.41	69.61	86.03	66.31	34.03	48.2	48.24	34.46
Merged-chr5-123721029-3	chr5	123720920	123721120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027494)	promoter-TSS (NM_027494)	24.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	85.6	58.35	76.44	76.02	109.64	102.22	53.81	70.96	107.2	111.47	123.61	60.77
Merged-chr4-59254603-3	chr4	59254476	59254676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5475.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	49.67	55.34	60.47	47.06	54.82	63.03	36.54	54.9	79.27	74.31	63.31	34.46
Merged-chr9-57537619-3	chr9	57537622	57537822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166364, exon 1 of 5)	exon (NM_001166364, exon 1 of 5)	194.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	17.77	8.3	17.11	19.71	14.73	11.92	15.28	6.81	20.85	15.06	9.04	12.84
Merged-chr12-102440338-2	chr12	102440235	102440435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-522.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	26.25	14.84	41.07	32.18	38.86	27.59	32.88	47.97	34.62	42.68	50.25	37.91
Merged-chr11-102297147-3	chr11	102297054	102297254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098837)	promoter-TSS (NM_001098837)	-525.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	136.48	141.11	132.35	123.07	157.91	207.27	133.2	110.89	193.34	211.39	213.56	110.27
Merged-chr4-139622769-3	chr4	139622679	139622879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175438)	promoter-TSS (NM_175438)	-115.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	80.36	75.21	70.74	63.15	82.64	89.68	29.9	47.64	130.01	111.97	140.19	72.99
Merged-chr2-119594267-3	chr2	119594180	119594380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015473)	promoter-TSS (NR_015473)	-16.0	NR_027832	66602.0	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	46.44	55.34	54.19	34.99	64.23	57.38	34.55	52.04	79.07	85.36	90.45	49.18
Merged-chr17-5211046-3	chr17	5210950	5211150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207717.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	21.4	27.42	36.51	34.19	38.46	57.07	44.51	56.41	32.06	29.12	31.66	15.35
Merged-chr3-19350160-1	chr3	19350060	19350260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38838.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	6.86	10.82	23.96	8.04	1.64	2.51	0.0	1.57	1.38	2.01	2.01	0.0
Merged-chr9-103364917-3	chr9	103364844	103365044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	35.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	33.11	34.71	39.93	17.7	29.05	36.06	25.91	33.95	58.42	63.27	90.45	31.64
Merged-chr4-40722427-3	chr4	40722390	40722590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029594)	promoter-TSS (NR_029594)	22.0	NM_008298	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	176.86	166.76	151.74	149.62	168.96	252.74	113.93	109.51	249.2	330.39	255.26	147.24
Merged-chr7-55857930-3	chr7	55857795	55857995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	15824.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	36.75	22.89	36.51	35.8	40.5	31.98	18.27	31.12	47.6	38.16	31.66	27.57
Merged-chr13-103920511-3	chr13	103920407	103920607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	79.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	161.92	208.77	175.7	116.64	132.14	215.42	141.5	132.34	219.11	197.83	209.54	101.19
Merged-chr19-41385166-3	chr19	41385042	41385242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031376)	promoter-TSS (NM_031376)	-72.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	73.89	63.13	31.95	45.45	60.96	68.05	38.2	42.53	53.11	71.8	49.75	26.63
Merged-chr1-181017483-3	chr1	181017387	181017587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312918)	promoter-TSS (NM_001312918)	82.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	22.61	29.43	22.82	25.74	22.91	39.82	33.88	24.42	31.27	26.11	31.66	19.42
Merged-chr11-89001792-3	chr11	89001687	89001887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	2384.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	62.99	53.58	108.96	82.85	51.55	76.51	70.09	80.02	45.63	35.65	93.96	50.44
Merged-chr16-38171525-3	chr16	38171426	38171626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 3 of 11)	intron (NM_001347232, intron 3 of 11)	-82266.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	64.61	47.04	63.32	43.84	66.27	71.81	59.79	60.14	72.38	96.4	39.19	26.63
Merged-chr19-61266710-3	chr19	61266648	61266848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-38330.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	282.66	362.7	318.31	388.93	273.28	271.87	421.86	210.2	359.55	353.48	365.81	342.4
Merged-chr4-3660140-3	chr4	3660032	3660232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	3626.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	29.88	24.65	50.2	42.63	40.91	35.43	25.58	50.27	58.61	43.68	89.94	36.97
Merged-chr4-101656256-3	chr4	101656165	101656365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175036, exon 3 of 4)	exon (NM_175036, exon 3 of 4)	8482.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	97.72	86.78	173.99	164.9	129.28	119.78	127.55	129.53	147.52	80.84	182.4	92.73
Merged-chr15-29026430-3	chr15	29026330	29026530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	686974.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	45.23	42.51	42.21	79.64	52.37	49.54	51.15	127.88	81.04	76.82	132.15	75.81
Merged-chr12-4843929-3	chr12	4843832	4844032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170858, intron 1 of 3)	intron (NM_001170858, intron 1 of 3)	629.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	18.98	27.92	21.68	19.31	23.73	20.38	16.94	15.56	37.76	18.08	18.59	20.68
Merged-chr7-80065533-2	chr7	80065431	80065631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	9726.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	30.69	23.64	34.23	22.52	46.64	51.43	31.22	46.43	3.54	2.01	1.0	5.95
Merged-chr4-6367672-3	chr4	6367548	6367748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1968.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	20.59	21.63	19.4	24.53	24.55	18.5	31.22	41.38	26.16	28.62	36.68	40.41
Merged-chr7-127588672-3	chr7	127588587	127588787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	-11.0	NM_172281	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	133.66	94.57	111.81	103.77	150.55	145.5	72.75	99.06	154.99	133.56	162.8	85.52
Merged-chr2-75737398-3	chr2	75737293	75737493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32730.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	15.34	15.85	25.67	22.93	49.09	35.12	32.88	40.79	29.5	30.13	34.17	20.36
Merged-chr8-84689246-3	chr8	84689157	84689357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164560)	promoter-TSS (NM_001164560)	10.0	NM_198020	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	62.18	25.66	41.64	29.76	43.77	58.01	25.24	40.49	54.09	47.2	45.22	44.48
Merged-chr10-19044066-3	chr10	19043984	19044184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-28674.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	78.34	87.03	84.43	89.69	93.68	116.96	64.77	99.87	88.9	80.84	126.12	46.68
Merged-chr16-57502447-3	chr16	57502359	57502559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-46783.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	142.94	183.11	171.71	137.95	164.05	228.91	172.73	171.2	163.05	189.8	186.42	98.68
Merged-chr10-21609750-3	chr10	21609629	21609829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	16584.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	60.17	37.23	49.06	57.11	67.09	67.1	66.77	92.47	65.89	48.7	99.99	45.11
Merged-chr2-166459150-3	chr2	166459045	166459245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015558)	TTS (NR_015558)	11694.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	25.44	23.39	59.33	37.4	48.68	45.15	23.58	40.54	44.65	23.1	34.17	20.68
Merged-chr10-7841993-3	chr10	7841949	7842149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	5668.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	67.03	59.86	99.83	100.95	68.73	77.14	69.76	96.7	82.02	92.89	109.54	69.55
Merged-chrX-48208678-3	chrX	48208581	48208781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172465)	promoter-TSS (NM_172465)	21.0	NM_172465	208884.0	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	54.92	48.29	61.61	54.7	58.91	74.94	55.14	72.62	75.53	76.82	117.08	35.4
Merged-chr12-8865050-3	chr12	8864965	8865165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-56242.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	24.63	21.13	34.23	31.37	45.41	52.99	48.16	37.71	30.49	33.64	37.69	20.36
Merged-chr2-12084519-3	chr2	12084427	12084627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-216719.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	23.82	22.64	56.48	35.39	36.0	28.22	26.24	43.74	46.22	30.63	50.25	30.7
Merged-chr14-51884905-4	chr14	51884842	51885042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	100.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	83.18	70.68	78.15	78.83	107.19	122.61	65.44	115.79	103.85	85.36	115.57	58.89
Merged-chr10-60831546-3	chr10	60831408	60831608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	73.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	77.93	70.93	86.14	76.42	110.05	133.27	120.58	121.57	104.44	111.97	123.61	63.59
Merged-chr1-52722806-3	chr1	52722710	52722910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357464, intron 1 of 7)	intron (NM_001357464, intron 1 of 7)	4508.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	49.67	48.29	78.15	69.58	45.0	98.46	65.44	98.52	83.59	79.33	103.51	50.12
Merged-chr10-56228838-3	chr10	56228727	56228927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-138.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	56.94	50.81	30.8	83.26	65.05	59.27	80.05	70.91	64.51	64.77	70.85	49.5
Merged-chr10-128083173-3	chr10	128083073	128083273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-134.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	198.26	227.88	219.63	200.3	193.92	268.73	159.44	171.08	293.07	285.7	238.68	135.64
Merged-chr2-153241464-3	chr2	153241370	153241570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018807)	promoter-TSS (NM_018807)	-62.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	117.1	84.51	102.68	90.9	68.73	108.5	56.14	89.36	113.29	98.91	147.73	71.11
Merged-chr6-124373749-3	chr6	124373660	124373860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9274.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	28.27	15.85	19.97	17.29	24.14	22.58	18.6	20.55	15.93	17.57	19.6	15.35
Merged-chr7-127184983-3	chr7	127184892	127185092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11085.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	34.73	33.7	32.52	26.14	20.86	52.68	22.26	17.52	47.99	43.18	25.63	27.25
Merged-chr15-80798532-3	chr15	80798449	80798649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-61.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	58.95	53.32	33.66	30.57	63.0	55.19	34.88	40.21	74.35	46.7	76.88	49.18
Merged-chr16-85124812-3	chr16	85124707	85124907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	48900.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	71.88	34.96	90.7	91.7	93.68	78.08	113.27	129.76	75.72	60.75	135.67	52.32
Merged-chr17-34934980-3	chr17	34934881	34935081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	3728.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	69.86	47.29	66.17	59.12	74.46	83.1	63.11	61.88	87.72	86.36	107.53	64.53
Merged-chr15-101277345-1	chr15	101277245	101277445	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6956.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	4.04	12.07	0.0	1.21	2.86	5.02	0.0	0.0	9.64	17.57	1.0	3.13
Merged-chr11-70229075-3	chr11	70228983	70229183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007528, exon 2 of 9)	exon (NM_007528, exon 2 of 9)	715.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	26.25	29.68	25.1	15.69	12.68	29.48	15.61	16.79	41.89	35.65	44.22	20.36
Merged-chr10-71347749-3	chr10	71347655	71347855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-8.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	111.45	106.4	105.53	90.9	108.82	154.59	94.34	151.49	164.23	151.64	183.91	104.94
Merged-chr2-177498194-3	chr2	177498091	177498291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_036450)	promoter-TSS (NR_036450)	-35.0	NR_036450	433520.0	Mm.425117	NM_001024825		Gm14403	-	predicted gene 14403	ncRNA	15.34	22.13	19.4	29.36	23.73	15.68	24.25	18.5	27.14	22.59	55.78	18.48
Merged-chr16-50225152-3	chr16	50225049	50225249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347240, exon 12 of 17)	exon (NM_001347240, exon 12 of 17)	-152297.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	27.46	15.09	29.09	27.75	28.23	29.79	19.27	38.1	42.68	31.13	21.61	20.68
Merged-chr8-120179187-3	chr8	120179090	120179290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1721.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	35.53	27.17	44.5	26.14	27.41	34.49	45.18	23.19	32.06	50.71	29.14	17.54
Merged-chr12-85346601-3	chr12	85346487	85346687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-7225.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	26.25	14.84	24.53	27.75	20.05	38.88	23.58	35.69	32.85	26.11	50.25	31.01
Merged-chr18-46311924-3	chr18	46311811	46312011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	17.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	70.26	49.05	46.78	52.69	83.05	63.34	53.15	67.68	87.92	87.87	100.5	39.47
Merged-chrX-7714289-1	chrX	7714189	7714389	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7931.0	NM_172372	54636.0	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	18.17	18.61	13.69	18.5	27.0	21.64	13.95	8.83	22.42	20.59	29.65	14.1
Merged-chr14-87141274-3	chr14	87141163	87141363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-39.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	140.52	114.45	151.74	142.38	182.46	178.11	136.19	246.84	215.57	227.96	299.48	135.33
Merged-chr17-45613180-3	chr17	45613084	45613284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11082.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	81.97	76.72	90.13	85.67	99.0	118.22	62.45	68.24	96.57	93.89	111.05	71.74
Merged-chr15-4024917-3	chr15	4024824	4025024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028266, intron 1 of 1)	intron (NR_028266, intron 1 of 1)	-1504.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	65.41	49.8	42.21	51.88	57.27	45.47	33.22	48.9	77.3	67.28	75.87	40.72
Merged-chr9-90237996-3	chr9	90237912	90238112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32757.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	74.3	55.84	154.59	133.13	87.14	77.14	125.56	174.03	129.62	99.92	252.75	104.94
Merged-chr4-135314022-3	chr4	135313924	135314124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39190.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	121.95	113.69	128.92	91.7	137.87	161.49	75.07	94.09	150.27	157.16	134.67	88.65
Merged-chr11-67047358-3	chr11	67047260	67047460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025510, intron 2 of 4)	intron (NM_025510, intron 2 of 4)	5258.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	29.88	26.66	18.25	30.16	22.5	18.5	15.61	17.38	38.75	22.09	31.15	19.42
Merged-chr9-100446188-3	chr9	100446098	100446298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40275.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	25.04	35.47	22.25	46.66	33.55	40.45	38.86	27.93	28.91	24.1	44.22	17.54
Merged-chr19-60581086-3	chr19	60581003	60581203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-80.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	113.87	121.99	82.72	114.63	131.73	133.27	113.93	101.55	204.75	180.26	210.04	88.65
Merged-chr13-33003115-3	chr13	33003011	33003211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1430.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	42.8	37.73	71.31	27.35	37.23	62.4	34.55	26.78	108.38	63.77	77.38	49.18
Merged-chr10-60277683-3	chr10	60277570	60277770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	42.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	46.84	63.39	55.9	67.97	46.23	72.44	51.49	67.74	114.47	99.42	99.49	83.64
Merged-chr2-164805007-3	chr2	164804895	164805095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	-114.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	177.67	131.05	122.08	150.02	170.6	201.63	125.89	129.76	187.64	169.71	155.27	89.59
Merged-chr5-142895282-3	chr5	142895165	142895365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-27.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	54.51	31.44	34.23	38.61	56.46	58.32	20.59	41.61	50.94	44.69	45.22	24.43
Merged-chr8-84737805-3	chr8	84737706	84737906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36349.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	62.99	41.25	59.9	62.34	56.46	71.18	55.14	71.44	61.56	68.29	79.89	44.48
Merged-chr1-92666853-3	chr1	92666752	92666952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-18011.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	62.99	50.81	66.17	66.36	57.68	72.12	103.31	138.53	82.02	67.28	108.03	56.7
Merged-chr8-25052122-3	chr8	25052011	25052211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-13149.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	77.93	68.92	53.62	97.33	57.27	66.48	41.85	78.79	54.68	58.75	63.82	44.8
Merged-chr9-75549187-1	chr9	75549087	75549287	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	10470.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	2.42	1.51	2.28	0.0	2.05	0.0	1.0	1.37	56.25	55.73	59.29	31.64
Merged-chr12-3359562-3	chr12	3359443	3359643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5589.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	35.13	42.51	26.24	15.69	44.18	66.79	18.93	20.1	60.38	47.7	35.68	16.6
Merged-chr14-121379874-2	chr14	121379780	121379980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-650.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	15.34	20.88	18.25	14.48	17.18	6.59	17.94	13.88	19.28	21.59	14.07	28.19
Merged-chr9-107533982-3	chr9	107533873	107534073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	28.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	96.91	102.87	92.41	111.41	105.55	134.52	85.04	124.12	110.54	90.38	136.17	71.11
Merged-chr8-34807196-3	chr8	34807094	34807294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-416.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	74.7	68.67	87.28	93.71	86.32	77.14	93.34	117.03	131.58	121.51	162.8	84.9
Merged-chr15-86168744-3	chr15	86168651	86168851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16977.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	49.67	41.75	66.74	50.27	73.64	52.37	67.1	82.63	52.32	49.71	65.83	51.69
Merged-chr2-34943907-3	chr2	34943809	34944009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001326601, exon 10 of 10)	exon (NM_001326601, exon 10 of 10)	17863.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	44.01	33.7	74.73	41.02	32.32	32.3	24.91	54.0	39.73	23.1	44.22	18.8
Merged-chr8-13551206-3	chr8	13551101	13551301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025601, intron 8 of 8)	intron (NM_025601, intron 8 of 8)	11260.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	18.98	14.59	29.66	24.94	28.64	16.62	14.28	26.07	19.67	32.13	22.61	19.42
Merged-chr10-26772426-3	chr10	26772343	26772543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-69.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	89.64	93.07	90.7	62.34	110.05	129.51	72.41	118.07	122.73	122.01	170.34	62.97
Merged-chr7-140881854-3	chr7	140881753	140881953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	16.0	NM_001127351	64384.0	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	41.59	31.44	31.95	26.95	41.32	45.47	15.28	35.86	59.6	51.21	69.85	40.72
Merged-chr5-149690050-2	chr5	149689952	149690152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	11795.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	18.98	22.64	25.67	28.96	33.14	23.83	30.89	43.88	3.93	9.04	8.04	5.95
Merged-chr18-12973269-3	chr18	12973162	12973362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008378, intron 1 of 10)	(CTCGG)n|Simple_repeat|Simple_repeat	-1198.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	90.05	87.28	91.84	86.88	97.37	116.96	81.05	101.58	132.37	135.07	139.19	64.22
Merged-chr11-76884745-1	chr11	76884645	76884845	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-19800.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	5.65	2.52	2.28	3.22	15.14	15.68	13.95	14.1	2.95	8.03	5.53	7.83
Merged-chr11-50276073-3	chr11	50275965	50276165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	B4A|SINE|B4	16271.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	48.05	44.52	43.35	39.82	51.14	42.96	27.9	66.73	50.94	60.25	67.84	40.1
Merged-chr17-27851328-3	chr17	27851217	27851417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5190.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	37.15	36.97	39.36	41.02	75.28	98.46	42.52	64.91	80.05	97.91	82.91	36.65
Merged-chr16-3743453-1	chr16	3743353	3743553	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-646.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	6.46	9.31	9.7	8.45	24.96	28.22	17.61	34.49	25.96	32.13	21.1	24.43
Merged-chr6-148534619-3	chr6	148534555	148534755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79654.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	93.28	95.58	98.69	111.81	117.0	116.65	124.56	136.26	122.73	129.54	152.25	85.21
Merged-chr12-78748835-3	chr12	78748742	78748942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-105.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	220.07	225.12	194.53	155.65	245.05	305.42	179.37	241.88	302.7	269.13	406.01	181.38
Merged-chr17-88462887-3	chr17	88462812	88463012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355743, exon 2 of 5)	exon (NM_001355743, exon 2 of 5)	22208.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	60.97	40.75	62.18	82.05	101.87	90.0	74.41	114.76	70.81	73.31	107.03	45.11
Merged-chr17-27565838-3	chr17	27565740	27565940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002895)	promoter-TSS (NM_001002895)	-113.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	142.54	104.64	101.54	88.89	113.32	129.19	74.74	116.58	155.38	150.13	168.83	92.1
Merged-chr7-101663666-3	chr7	101663569	101663769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009191)	promoter-TSS (NM_009191)	-99.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	72.68	57.35	80.43	57.92	79.78	99.4	34.55	64.96	103.65	93.89	92.96	37.28
Merged-chr9-64281607-3	chr9	64281502	64281702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324557)	promoter-TSS (NM_001324557)	17.0	NM_001324557	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	73.49	59.86	82.15	71.59	68.32	93.76	31.56	48.06	88.12	81.84	64.32	57.33
Merged-chr15-103366631-3	chr15	103366520	103366720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010577, exon 1 of 30)	5' UTR (NM_010577, exon 1 of 30)	171.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	72.28	79.73	42.78	32.18	76.5	102.85	57.47	35.52	78.68	104.44	84.92	34.46
Merged-chr11-114684748-3	chr11	114684651	114684851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9283.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	66.63	57.35	92.41	85.27	73.23	79.96	64.44	113.44	108.57	80.84	109.54	103.38
Merged-chr7-110164954-3	chr7	110164858	110165058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42899.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	46.03	56.85	53.62	63.55	56.05	84.35	23.25	40.77	83.0	74.81	96.98	43.23
Merged-chr17-7945852-3	chr17	7945741	7945941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025789, exon 1 of 8)	exon (NM_025789, exon 1 of 8)	227.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	46.44	74.7	45.07	68.37	51.55	69.61	61.78	39.28	69.04	74.81	83.41	47.3
Merged-chr16-76053731-3	chr16	76053629	76053829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52945.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	31.5	38.48	79.29	74.41	58.09	52.99	54.48	93.65	46.42	43.18	72.36	46.36
Merged-chr12-113000808-3	chr12	113000697	113000897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028193)	promoter-TSS (NM_028193)	-176.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	138.1	121.99	130.06	107.79	186.55	220.44	111.94	148.85	203.57	205.36	281.39	124.99
Merged-chr4-101356246-3	chr4	101356142	101356342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	6.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	44.01	45.78	25.1	22.93	44.18	45.15	52.15	44.58	48.78	49.21	69.34	41.66
Merged-chr12-83487815-3	chr12	83487727	83487927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267626)	promoter-TSS (NM_001267626)	-91.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	38.36	35.97	40.5	43.84	44.18	71.81	30.89	70.09	47.6	49.71	71.86	35.71
Merged-chr10-94961504-3	chr10	94961405	94961605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16927.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	29.88	14.09	29.09	25.34	27.0	30.1	34.21	47.94	27.54	23.6	14.57	31.01
Merged-chr16-24593730-3	chr16	24593654	24593854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	64440.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	62.18	50.05	50.2	43.84	74.46	119.78	56.8	63.0	81.23	62.76	62.31	38.22
Merged-chr11-87749674-3	chr11	87749595	87749795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7169.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	141.73	150.92	168.86	150.42	141.55	167.76	117.26	121.35	231.9	224.44	287.42	153.19
Merged-chr9-59735863-3	chr9	59735746	59735946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	14803.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	23.42	18.36	39.36	40.22	27.0	42.65	36.54	34.6	36.78	34.14	49.24	25.37
Merged-chr1-106796288-1	chr1	106796188	106796388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009190, intron 1 of 10)	CpG	437.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	23.42	12.83	31.95	20.91	22.91	20.38	22.59	19.88	25.57	22.09	33.67	27.25
Merged-chr2-60125316-3	chr2	60125232	60125432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	408.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	23.82	27.92	35.37	27.35	31.5	26.34	30.89	19.99	29.9	29.12	28.64	30.7
Merged-chr15-50890088-3	chr15	50890002	50890202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-61.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	22.61	18.86	20.54	29.36	22.09	43.59	32.22	34.51	44.45	40.67	58.79	15.35
Merged-chr2-144009667-3	chr2	144009567	144009767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	1596.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	92.87	126.27	130.63	101.76	97.37	147.69	110.95	130.85	196.49	191.8	203.51	114.34
Merged-chr15-86204128-3	chr15	86204061	86204261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10298.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	40.78	28.17	59.33	25.34	57.27	52.05	74.07	81.31	55.27	68.79	98.49	63.91
Merged-chr10-80755066-3	chr10	80754969	80755169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-134.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	165.15	180.6	159.73	145.19	180.41	236.43	160.77	148.21	235.44	247.54	264.81	123.74
Merged-chr18-39619513-3	chr18	39619408	39619608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132263.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	39.98	39.74	43.93	24.13	61.77	90.94	65.11	55.01	83.2	100.92	69.85	30.39
Merged-chr9-107998053-3	chr9	107997960	107998160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4588.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	25.84	37.48	35.37	30.97	22.91	32.61	20.93	24.7	24.0	32.13	35.68	15.04
Merged-chr2-91948255-1	chr2	91948155	91948355	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2093.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	30.69	26.41	38.22	24.94	22.5	13.8	15.28	34.85	39.34	22.59	39.7	20.68
Merged-chr8-11039030-3	chr8	11038949	11039149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30619.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	46.03	39.74	86.71	94.11	102.28	84.35	73.08	125.89	68.64	87.37	120.09	60.15
Merged-chr5-135478967-3	chr5	135478866	135479066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	66156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	42.4	23.39	39.93	42.63	41.32	61.15	34.88	50.94	39.73	48.2	59.29	22.87
Merged-chr8-66490823-3	chr8	66490715	66490915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4285.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	26.65	20.88	28.52	13.27	28.64	47.66	28.23	22.49	54.29	57.74	67.84	32.89
Merged-chr6-140678804-3	chr6	140678696	140678896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009637)	TTS (NM_009637)	51911.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	27.46	17.36	19.4	23.73	11.86	24.15	17.27	21.34	35.01	21.09	40.7	16.29
Merged-chr3-144718733-3	chr3	144718648	144718848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1587.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	31.09	39.49	30.8	30.57	33.14	34.81	63.44	41.19	70.22	33.64	60.8	28.19
Merged-chr13-55714660-3	chr13	55714563	55714763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175150)	promoter-TSS (NM_175150)	13.0	NM_175150	69672.0	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	21.8	20.88	30.8	24.53	34.36	62.4	13.29	26.52	45.63	25.61	45.22	22.24
Merged-chr10-51422441-1	chr10	51422341	51422541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-58171.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.85	4.78	18.25	8.04	11.05	12.54	7.64	10.12	9.64	11.05	11.05	6.58
Merged-chr13-76018681-3	chr13	76018609	76018809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178916)	promoter-TSS (NM_178916)	3.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	105.79	97.09	101.54	102.56	134.6	138.29	101.64	111.17	204.95	215.91	290.94	124.68
Merged-chr10-130542258-3	chr10	130542145	130542345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44866.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	51.28	45.28	88.42	76.02	60.55	72.12	83.04	42.81	84.18	81.84	102.51	71.11
Merged-chr7-45016296-3	chr7	45016214	45016414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008422)	promoter-TSS (NM_001008422)	-65.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	176.86	160.98	172.85	148.41	168.96	227.34	127.55	118.26	246.06	260.59	271.34	162.27
Merged-chr6-52012172-2	chr6	52012079	52012279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	370.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	19.79	21.38	22.82	24.13	13.09	23.52	13.29	20.02	28.91	23.6	24.62	15.35
Merged-chr15-59726020-3	chr15	59725913	59726113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68946.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	26.65	20.37	21.68	32.58	38.46	44.84	37.87	56.07	38.35	52.72	50.25	43.86
Merged-chr1-160234780-1	chr1	160234680	160234880	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 6 of 8)	RMER6A|LTR|ERVK	-21888.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	1.62	2.26	6.85	2.82	18.41	22.26	14.62	19.37	0.79	5.52	3.01	3.76
Merged-chr19-43669583-3	chr19	43669485	43669685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	5296.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	18.57	21.88	37.08	31.37	28.64	29.16	34.21	42.45	32.26	38.66	42.71	37.91
Merged-chr11-62602862-3	chr11	62602822	62603022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	45.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	152.23	165.0	90.13	98.14	91.23	209.78	75.07	66.87	131.58	187.79	135.17	74.87
Merged-chr4-119177920-2	chr4	119177806	119178006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013848, exon 13 of 13)	3' UTR (NM_013848, exon 13 of 13)	-3711.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	75.91	55.59	114.09	96.53	1.64	0.31	1.99	2.36	92.44	67.78	139.69	62.03
Merged-chr10-39732859-4	chr10	39732791	39732991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	731.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	26.25	24.65	24.53	35.8	24.55	32.3	21.92	21.62	25.18	25.11	37.18	23.49
Merged-chr13-101540585-3	chr13	101540526	101540726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143046.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	56.53	41.25	47.92	46.66	62.59	65.85	74.41	65.44	61.96	73.81	67.84	64.85
Merged-chr5-53402939-3	chr5	53402827	53403027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135821.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	83.59	81.24	114.09	134.33	85.09	87.17	103.31	114.67	104.64	134.06	140.7	97.74
Merged-chr1-43462870-2	chr1	43462778	43462978	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	17127.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.65	4.02	1.71	1.61	46.23	54.25	46.17	64.4	47.4	59.75	45.22	29.45
Merged-chr5-85924551-1	chr5	85924451	85924651	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	141032.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	6.86	3.52	2.28	2.01	4.5	3.76	13.95	9.08	4.13	7.03	6.03	4.39
Merged-chr2-143063054-3	chr2	143062948	143063148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021335)	promoter-TSS (NM_021335)	-21.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	42.8	50.56	31.95	52.29	50.32	51.11	44.84	52.6	66.68	63.27	86.93	36.03
Merged-chr8-46739593-3	chr8	46739554	46739754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008391)	promoter-TSS (NM_008391)	-91.0	NM_008391	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	132.04	118.72	111.24	137.55	141.96	167.45	117.92	147.45	191.18	193.81	249.73	131.57
Merged-chr2-44976593-3	chr2	44976492	44976692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	46585.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	27.46	27.17	26.24	21.72	45.0	51.11	52.48	39.9	33.63	34.65	56.78	23.18
Merged-chr19-56721938-3	chr19	56721843	56722043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007419)	promoter-TSS (NM_007419)	-429.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	102.56	83.76	96.41	68.78	100.23	117.59	72.08	89.24	98.54	114.98	139.69	50.75
Merged-chr2-118745668-3	chr2	118745574	118745774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-84.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	29.88	27.92	54.19	42.63	42.14	40.45	25.58	40.57	49.37	59.75	69.85	29.76
Merged-chr7-38201122-3	chr7	38201028	38201228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17341.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	43.61	32.2	25.67	50.27	24.96	36.69	14.28	39.34	38.75	46.7	54.77	31.33
Merged-chr13-21779447-3	chr13	21779338	21779538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020034)	TTS (NM_020034)	1187.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	113.47	97.84	111.24	108.19	100.23	135.46	103.97	119.5	191.57	156.15	150.24	99.93
Merged-chr15-101223247-3	chr15	101223149	101223349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	872.0	NR_045326	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	44.01	26.91	34.8	28.96	38.05	29.48	29.56	50.22	51.14	23.1	41.71	30.07
Merged-chr5-105626383-3	chr5	105626304	105626504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73565.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	31.9	23.39	36.51	34.59	26.59	30.1	21.26	17.07	32.85	25.11	30.15	32.58
Merged-chr13-37348339-3	chr13	37348228	37348428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2983.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	57.74	47.04	32.52	54.3	46.64	62.4	44.51	44.16	43.47	66.28	36.18	41.04
Merged-chr5-22855272-2	chr5	22855161	22855361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-108377.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	16.96	21.88	24.53	30.97	1.64	0.94	0.66	0.39	41.7	36.15	29.65	26.0
Merged-chr2-29624458-3	chr2	29624341	29624541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4721.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	35.53	27.67	37.65	34.19	33.14	36.37	12.29	33.5	32.45	39.16	37.18	28.82
Merged-chr17-49019089-4	chr17	49018980	49019180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	86498.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	14.94	14.84	19.4	12.07	14.73	6.27	9.3	13.99	11.01	21.09	12.56	23.18
Merged-chr5-35105742-3	chr5	35105646	35105846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-49.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	39.17	61.88	58.19	51.88	72.41	96.89	57.8	48.7	65.69	87.37	76.38	47.3
Merged-chr10-57492239-3	chr10	57492158	57492358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008297, intron 1 of 11)	RLTR20D|LTR|ERVK	5873.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	23.02	27.92	30.23	23.73	37.64	52.99	54.14	51.39	59.01	44.19	82.91	38.22
Merged-chr12-21287488-3	chr12	21287387	21287587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1190.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	35.13	38.74	60.47	49.47	47.46	61.77	43.18	82.18	76.51	53.22	73.86	52.63
Merged-chr18-67641443-3	chr18	67641324	67641524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134138)	promoter-TSS (NM_134138)	-69.0	NM_001081073	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	47.24	53.58	30.8	32.18	61.37	55.19	49.83	45.14	48.78	58.24	51.76	36.65
Merged-chr10-96351519-3	chr10	96351421	96351621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125314.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	36.75	35.72	52.48	33.78	38.86	53.93	44.18	44.94	54.68	53.22	85.42	38.22
Merged-chr11-106488438-1	chr11	106488338	106488538	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-642.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	7.67	10.56	6.85	4.02	13.5	17.87	8.64	6.62	28.91	20.08	8.04	4.39
Merged-chr5-130000935-3	chr5	130000839	130001039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010368, exon 2 of 12)	exon (NM_010368, exon 2 of 12)	2110.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	122.75	116.71	114.66	126.29	136.64	183.13	126.56	151.57	162.07	163.18	223.1	97.74
Merged-chr8-84979937-3	chr8	84979863	84980063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1215.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	209.17	206.76	255.56	265.45	243.01	296.33	260.75	257.66	296.41	276.66	372.84	189.84
Merged-chr6-92941464-2	chr6	92941365	92941565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	883.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	22.61	6.79	3.99	21.32	116.59	141.11	141.84	152.1	1.18	1.0	0.0	2.82
Merged-chr7-143461133-3	chr7	143461031	143461231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161624)	promoter-TSS (NM_001161624)	-81.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	73.89	56.34	58.19	46.25	86.32	72.75	59.79	75.56	86.15	69.29	134.67	38.53
Merged-chr1-37299844-3	chr1	37299754	37299954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290797)	promoter-TSS (NM_001290797)	16.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	36.75	51.56	46.78	29.36	60.55	56.13	32.22	41.13	61.76	69.79	69.85	41.04
Merged-chr11-73177112-3	chr11	73177009	73177209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	26.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	124.77	128.03	151.17	103.77	178.78	201.31	123.57	142.51	199.25	193.31	209.03	119.67
Merged-chr3-109045723-3	chr3	109045615	109045815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18108.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	23.82	27.92	19.97	15.28	15.14	30.42	30.56	15.45	26.95	32.13	27.64	17.23
Merged-chr1-125458733-3	chr1	125458621	125458821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22994.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	23.42	15.85	47.92	26.95	40.09	34.18	33.88	38.83	44.65	47.2	64.82	38.53
Merged-chr7-82802472-3	chr7	82802383	82802583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46839.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	57.34	64.64	74.73	98.14	56.87	41.08	68.43	100.09	103.46	63.77	91.45	56.7
Merged-chr10-111465000-3	chr10	111464903	111465103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8224.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	15.75	21.38	33.09	51.08	40.91	29.48	22.92	36.11	43.86	33.64	46.23	20.05
Merged-chr5-123025433-3	chr5	123025326	123025526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	10352.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	71.47	52.07	59.9	84.86	73.23	76.51	68.43	78.87	57.24	48.7	70.85	58.89
Merged-chr15-98831538-3	chr15	98831457	98831657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-49.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	123.97	118.47	105.53	105.78	123.55	171.21	77.06	88.32	154.01	177.24	153.76	120.29
Merged-chr7-78912519-3	chr7	78912428	78912628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-896.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	47.65	57.85	38.22	26.55	52.77	62.09	32.22	35.94	44.84	48.7	57.79	23.49
Merged-chr16-38088963-3	chr16	38088862	38089062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019827)	promoter-TSS (NM_019827)	-39.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	243.49	267.88	292.07	269.88	276.55	312.63	255.44	258.28	374.3	399.68	476.35	226.18
Merged-chr17-29268891-3	chr17	29268802	29269002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030561, exon 1 of 9)	5' UTR (NM_030561, exon 1 of 9)	114.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	127.2	79.73	55.33	76.82	103.5	139.23	65.77	81.34	120.18	120.51	92.46	70.48
Merged-chr18-77841690-3	chr18	77841580	77841780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 2 of 14)	L1_Mur3|LINE|L1	-45290.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	48.46	59.36	62.18	47.86	45.82	81.22	46.17	34.07	60.19	62.76	58.79	30.39
Merged-chr13-65241581-1	chr13	65241481	65241681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-35865.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	22.21	37.48	23.39	27.75	24.96	20.7	42.52	25.79	43.47	38.66	41.2	34.46
Merged-chr11-90240863-1	chr11	90240763	90240963	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8613.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	18.17	13.83	16.54	13.27	31.91	46.72	30.56	22.49	32.85	39.67	35.68	9.08
Merged-chr5-139380979-2	chr5	139380856	139381056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033147)	TTS (NR_033147)	317.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	23.82	20.12	50.77	27.35	42.55	42.65	39.53	39.76	37.76	36.15	50.25	44.8
Merged-chr5-77193442-3	chr5	77193339	77193539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	17766.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	55.72	23.9	31.95	41.02	15.96	12.54	12.95	15.2	40.71	44.19	60.3	36.03
Merged-chr17-67304460-3	chr17	67304336	67304536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	50023.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	19.38	19.62	26.24	32.18	22.91	33.87	13.62	29.75	59.01	34.14	54.27	37.28
Merged-chr11-3176719-2	chr11	3176616	3176816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	16747.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	37.96	52.07	58.19	43.04	79.37	44.53	64.77	41.36	0.39	0.5	0.0	0.63
Merged-chr7-58399264-3	chr7	58399160	58399360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258942.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	138.5	148.65	134.63	187.02	179.19	175.91	192.33	160.68	207.7	189.29	293.95	141.6
Merged-chr10-80226536-3	chr10	80226423	80226623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-75.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	183.73	150.92	205.36	201.5	176.32	223.58	147.48	188.44	226.98	177.75	326.11	122.8
Merged-chr14-70175428-3	chr14	70175331	70175531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	1384.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	72.68	55.84	96.98	100.55	124.37	119.47	80.05	116.44	114.47	95.9	145.72	77.06
Merged-chr4-122848215-3	chr4	122848088	122848288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 4 of 8)	intron (NM_008917, intron 4 of 8)	11961.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	89.64	75.71	53.62	78.83	99.41	100.66	51.49	84.84	112.31	97.41	139.19	76.44
Merged-chr11-88201389-1	chr11	88201289	88201489	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	-2999.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.81	2.01	2.28	4.83	6.55	3.14	8.97	12.11	1.57	0.0	0.5	3.13
Merged-chr9-118925454-3	chr9	118925316	118925516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1120.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	51.28	38.23	37.65	49.07	85.5	64.6	36.87	48.31	73.17	66.28	65.83	41.98
Merged-chr14-120453267-3	chr14	120453162	120453362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-25199.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	21.4	24.4	18.83	16.09	40.5	45.78	29.9	21.39	34.81	24.1	51.25	14.41
Merged-chr10-79960021-3	chr10	79959942	79960142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175450)	promoter-TSS (NM_175450)	-110.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	197.46	189.9	209.93	168.52	196.37	260.58	112.27	175.51	226.39	246.03	241.19	157.89
Merged-chr2-117838597-3	chr2	117838509	117838709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	16681.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	25.04	23.9	22.82	37.0	45.82	58.01	40.52	83.1	58.81	61.26	72.36	44.48
Merged-chrX-74312951-3	chrX	74312820	74313020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138607)	promoter-TSS (NM_138607)	-113.0	NM_138607	108160.0	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	46.03	44.27	38.79	37.0	56.05	50.49	27.57	41.78	55.66	59.25	79.89	46.99
Merged-chr19-46524840-3	chr19	46524746	46524946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23198.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	35.94	37.98	52.48	53.49	56.87	53.93	81.05	75.84	45.43	38.66	64.32	37.59
Merged-chr13-41001070-3	chr13	41000979	41001179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155347)	promoter-TSS (NR_155347)	67.0	NR_155347	102633880.0	Mm.314757	NR_155347		A730081D07Rik	-	RIKEN cDNA A730081D07 gene	ncRNA	72.28	74.2	50.2	70.38	64.64	101.28	56.8	66.11	76.91	93.39	64.82	56.39
Merged-chr16-23108324-3	chr16	23108218	23108418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030705)	promoter-TSS (NR_030705)	-635.0	NR_030705	100216532.0		NR_030705	ENSMUSG00000088524	Snord2	-	small nucleolar RNA, C/D box 2	snoRNA	45.63	68.42	50.2	47.06	40.5	58.95	30.89	46.93	75.92	75.82	104.52	63.59
Merged-chr12-80939395-3	chr12	80939326	80939526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	5973.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	33.92	27.17	26.24	37.0	38.46	34.81	22.26	32.5	47.6	42.68	51.76	27.88
Merged-chr12-35885353-3	chr12	35885240	35885440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40281.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	22.61	20.88	38.79	52.69	33.96	27.91	33.22	47.47	21.83	49.21	44.22	26.0
Merged-chr1-119837552-3	chr1	119837464	119837664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-493.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	75.11	65.9	74.16	84.46	124.78	108.81	95.0	153.37	135.71	115.48	183.41	84.9
Merged-chr15-84350450-3	chr15	84350359	84350559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24340.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	21.4	20.37	27.95	22.52	26.18	17.87	38.2	49.09	24.98	20.59	44.22	18.48
Merged-chr11-103966492-3	chr11	103966387	103966587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-238.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	245.91	228.14	192.81	203.11	224.19	268.73	181.7	190.88	252.94	297.75	306.01	147.86
Merged-chr3-88531754-3	chr3	88531664	88531864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-631.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	18.98	22.89	15.97	16.09	30.27	22.89	23.92	16.4	25.57	28.12	16.58	16.6
Merged-chr12-24758528-3	chr12	24758424	24758624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50270.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	109.02	78.73	124.36	135.94	105.14	99.4	104.63	151.21	62.94	48.7	131.15	44.8
Merged-chr8-84437013-1	chr8	84436913	84437113	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	21649.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	5.65	3.02	3.99	2.41	15.14	15.05	19.93	30.81	0.0	0.0	0.0	0.31
Merged-chrX-152327556-3	chrX	152327452	152327652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040269)	promoter-TSS (NR_040269)	-59.0	NR_040270	72997.0	Mm.254833	NR_040269	ENSMUSG00000087403	Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA	26.25	31.44	32.52	39.42	41.32	43.27	37.2	55.99	37.37	41.17	51.25	31.01
Merged-chr5-38561744-3	chr5	38561634	38561834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-139.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	214.82	216.06	240.16	231.26	224.19	297.89	182.03	216.03	310.18	300.76	355.76	179.5
Merged-chrX-49196646-3	chrX	49196531	49196731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	Lx9|LINE|L1	91611.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	51.69	57.1	94.13	62.34	75.68	74.94	56.14	53.07	73.36	58.24	87.93	24.12
Merged-chr7-80711616-3	chr7	80711497	80711697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016721)	TTS (NM_016721)	-22720.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	28.67	41.5	54.19	47.86	53.59	76.51	29.56	53.61	43.86	47.2	67.33	45.11
Merged-chr9-78175974-3	chr9	78175872	78176072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	58.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	33.52	66.91	57.05	63.55	49.09	64.91	59.79	44.66	62.55	35.15	59.29	32.58
Merged-chr17-63500564-3	chr17	63500477	63500677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	3.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	65.01	43.01	57.05	75.21	57.27	69.61	64.77	96.76	59.99	60.75	73.86	33.52
Merged-chr1-55666379-3	chr1	55666257	55666457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	260411.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	27.86	19.87	30.23	26.14	16.36	15.68	11.63	21.48	24.39	48.2	31.66	20.68
Merged-chr18-12761314-3	chr18	12761218	12761418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19963.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	23.42	16.6	31.38	27.35	37.64	18.81	10.96	34.46	18.88	18.08	30.65	17.86
Merged-chr14-63079106-3	chr14	63078997	63079197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	24024.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	26.25	34.46	51.34	37.4	45.41	61.15	59.13	77.78	74.35	45.69	94.47	45.74
Merged-chr1-36573993-3	chr1	36573896	36574096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-15615.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	32.71	17.61	62.75	60.73	29.05	21.95	41.19	65.05	35.4	27.62	56.28	29.13
Merged-chr10-75212071-3	chr10	75211969	75212169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	-4.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	172.82	119.73	153.45	141.98	177.14	193.47	130.21	158.55	199.25	255.07	286.92	116.54
Merged-chr10-117376510-3	chr10	117376385	117376585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	CpG	488.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	26.65	20.88	29.09	17.29	31.91	36.06	30.56	27.08	56.25	51.21	62.31	41.35
Merged-chr19-7241198-3	chr19	7241093	7241293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027643)	promoter-TSS (NM_027643)	29.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	128.41	108.41	118.65	101.35	106.78	133.9	76.73	79.57	118.01	107.45	99.49	62.34
Merged-chr8-126839255-2	chr8	126839148	126839348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9772.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	16.56	13.83	38.22	12.47	43.36	47.35	35.21	29.19	48.39	46.19	52.76	27.88
Merged-chr2-118804687-3	chr2	118804585	118804785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9318.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	42.4	36.97	46.78	61.94	46.23	44.21	22.92	75.67	41.5	39.16	41.2	34.15
Merged-chr7-135735898-3	chr7	135735820	135736020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19541.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	23.42	33.45	18.25	19.71	32.73	35.12	34.21	25.4	48.19	60.25	52.26	34.15
Merged-chr7-19381942-3	chr7	19381838	19382038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	-101.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	83.59	77.97	63.89	50.27	85.91	90.31	39.53	58.32	129.62	98.41	121.1	56.39
Merged-chr2-5860608-3	chr2	5860519	5860719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016918, intron 3 of 9)	intron (NM_016918, intron 3 of 9)	2315.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	62.99	61.62	34.8	20.51	57.68	96.27	50.16	40.74	65.1	86.86	66.83	27.57
Merged-chr12-73963719-3	chr12	73963624	73963824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-806.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	30.28	15.59	37.65	22.52	40.91	50.49	25.91	51.7	49.17	45.19	43.21	22.24
Merged-chr11-58301941-3	chr11	58301845	58302045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5124.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	36.75	24.15	19.97	30.97	29.05	36.37	12.95	26.13	30.29	38.16	35.17	19.42
Merged-chr1-4867756-3	chr1	4867689	4867889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159750, intron 2 of 9)	RMER6B|LTR|ERVK	9461.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	29.88	40.75	51.34	26.55	47.05	49.86	30.56	24.03	85.76	49.21	82.91	35.09
Merged-chr17-46752304-3	chr17	46752206	46752406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305990)	promoter-TSS (NM_001305990)	-92.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	151.83	180.09	188.25	165.71	186.14	218.25	145.16	148.74	181.15	217.91	226.62	125.62
Merged-chr11-23823421-3	chr11	23823318	23823518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52448.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	100.14	73.45	70.17	67.17	110.05	111.63	86.03	81.0	81.04	63.27	71.86	47.62
Merged-chr11-94993461-3	chr11	94993365	94993565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2253.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	113.47	93.32	120.94	125.49	105.14	105.05	68.43	90.84	84.58	106.95	150.74	65.16
Merged-chr1-144243659-3	chr1	144243534	144243734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5470.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	17.77	20.37	11.41	20.51	26.59	31.67	30.23	26.78	25.96	31.63	35.17	23.81
Merged-chr2-147012884-3	chr2	147012777	147012977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-122.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	51.69	46.53	44.5	73.2	53.18	60.52	68.1	47.41	69.04	60.75	85.92	65.47
Merged-chr8-117475161-3	chr8	117475056	117475256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15891.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	44.01	23.9	17.68	24.94	23.73	27.91	13.62	26.92	47.21	43.18	40.2	25.37
Merged-chr16-90220615-3	chr16	90220511	90220711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-131.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	137.69	139.85	139.19	129.51	159.96	169.64	125.89	148.57	190.0	155.65	210.04	104.32
Merged-chr13-59003901-3	chr13	59003811	59004011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	196214.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	66.22	59.11	58.76	71.19	64.23	56.44	43.51	54.45	79.46	80.34	67.84	48.87
Merged-chr8-72296740-1	chr8	72296640	72296840	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-22322.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.83	2.52	2.28	4.42	4.5	8.47	7.31	9.5	5.9	7.03	3.01	5.95
Merged-chr19-15537742-3	chr19	15537668	15537868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16D|LTR|ERVL	386854.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	98.53	105.89	111.81	139.56	186.55	168.7	161.44	176.52	125.68	97.41	105.52	82.7
Merged-chr10-118818168-3	chr10	118818065	118818265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50738.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	101.76	105.14	102.11	77.22	115.37	158.67	99.32	104.58	160.1	183.77	160.29	70.17
Merged-chr7-114117749-3	chr7	114117641	114117841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	40.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	23.82	14.84	32.52	35.8	35.18	33.87	21.59	38.61	30.68	36.65	43.21	24.75
Merged-chr3-81051738-3	chr3	81051633	81051833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	15317.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	167.98	136.08	196.24	161.28	183.28	185.32	168.08	209.33	202.59	198.83	257.77	127.5
Merged-chr3-158061172-3	chr3	158061070	158061270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359763, intron 10 of 13)	intron (NM_001359763, intron 10 of 13)	24488.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	21.4	19.87	34.8	25.34	19.64	23.83	17.94	34.18	50.94	25.61	31.66	29.76
Merged-chr17-84701599-1	chr17	84701499	84701699	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18478.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	4.85	2.26	2.28	5.23	2.86	5.96	8.64	11.24	3.15	2.01	3.52	3.76
Merged-chr16-8830584-2	chr16	8830499	8830699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081400, exon 1 of 4)	exon (NM_001081400, exon 1 of 4)	499.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	24.63	27.92	28.52	36.2	25.36	35.43	38.86	18.98	46.42	39.67	48.74	41.04
Merged-chr9-110706993-3	chr9	110706885	110707085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	35625.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	60.17	48.8	58.19	71.19	68.73	72.75	50.16	65.1	79.86	67.28	68.84	34.77
Merged-chr5-19888646-3	chr5	19888549	19888749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-18869.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	37.15	35.21	50.77	63.55	43.77	51.43	37.54	63.84	49.37	63.27	73.36	35.09
Merged-chr2-73491728-3	chr2	73491639	73491839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5986.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	29.07	41.25	33.66	18.1	18.0	42.33	34.21	20.19	43.07	40.67	36.18	12.84
Merged-chr5-150673711-3	chr5	150673607	150673807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346503)	promoter-TSS (NM_001346503)	-120.0	NM_175310	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	263.68	275.93	286.37	258.21	270.01	335.84	239.16	304.29	313.32	328.88	432.14	217.41
Merged-chr15-100616027-3	chr15	100615946	100616146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045701)	promoter-TSS (NR_045701)	384.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	73.49	69.17	57.62	66.36	66.68	80.9	44.84	57.56	95.39	98.91	98.99	58.27
Merged-chr11-23257046-1	chr11	23256946	23257146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1005.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	12.11	9.56	11.41	20.11	5.32	16.31	12.29	15.59	23.41	27.62	21.61	17.54
Merged-chr1-152616238-3	chr1	152616149	152616349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	8968.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	32.3	23.64	44.5	39.01	33.96	37.94	16.28	21.11	39.14	33.64	27.64	23.49
Merged-chr14-47473103-3	chr14	47472980	47473180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030236, intron 1 of 1)	CpG	519.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	51.28	47.54	41.07	44.24	45.0	83.1	42.19	67.01	81.04	55.23	90.45	61.09
Merged-chr7-29984237-2	chr7	29984135	29984335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033355, intron 1 of 9)	intron (NM_001033355, intron 1 of 9)	280.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	41.59	51.06	29.09	11.66	52.77	74.32	24.25	20.27	6.69	12.05	7.54	6.27
Merged-chr10-39134017-3	chr10	39133917	39134117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	-6.0	NM_028006	71924.0	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	19.38	19.37	23.96	22.12	25.36	26.03	37.2	27.22	23.41	26.61	36.18	22.24
Merged-chr8-126593359-3	chr8	126593259	126593459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	77.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	35.53	15.85	47.92	25.34	27.41	43.59	33.22	23.55	47.99	47.7	54.27	20.36
Merged-chr8-125649622-3	chr8	125649514	125649714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20204.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	46.84	42.26	35.37	59.12	36.82	37.63	40.19	58.54	42.09	43.18	55.78	37.91
Merged-chr4-43492952-3	chr4	43492855	43493055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	104.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	218.05	200.97	233.32	220.81	227.05	285.98	181.7	200.24	258.45	282.18	343.2	156.95
Merged-chrX-8074752-3	chrX	8074649	8074849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011514)	promoter-TSS (NM_011514)	11.0	NM_011514	20937.0	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 1	protein-coding	117.91	116.96	159.73	107.79	153.41	163.37	110.28	123.34	173.28	153.64	175.37	103.38
Merged-chr11-113565798-3	chr11	113565695	113565895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166503)	promoter-TSS (NM_001166503)	20.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	27.86	25.66	26.24	17.29	51.55	39.82	24.91	36.5	55.86	69.79	51.25	23.49
Merged-chr17-43569990-1	chr17	43569890	43570090	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1539.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	8.88	3.77	6.28	3.22	6.14	10.35	10.96	8.89	8.85	7.03	5.53	4.07
Merged-chr7-84615239-1	chr7	84615139	84615339	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001360579, exon 7 of 7)	3' UTR (NM_001360579, exon 7 of 7)	-9297.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	5.25	1.51	2.85	1.21	2.45	0.63	14.28	15.06	2.16	3.51	3.01	4.07
Merged-chr17-87170557-3	chr17	87170461	87170661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24381.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	16.15	19.12	35.94	22.12	40.09	42.02	32.88	45.17	29.9	43.68	38.19	17.23
Merged-chr10-24160567-3	chr10	24160491	24160691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	11274.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	37.55	30.69	35.37	41.02	33.55	17.25	15.94	30.62	34.81	23.1	35.68	23.18
Merged-chr4-42949774-3	chr4	42949672	42949872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-95.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	185.34	195.69	237.31	214.77	210.28	286.29	172.4	242.24	261.4	281.18	381.89	163.84
Merged-chr5-140748558-3	chr5	140748452	140748652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 5 of 7)	intron (NM_173405, intron 5 of 7)	24425.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	36.34	31.69	52.48	44.64	59.32	40.14	41.19	60.87	35.99	28.12	37.69	33.21
Merged-chr14-75131073-3	chr14	75130995	75131195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-28.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	93.68	81.75	53.62	45.45	79.78	100.03	43.85	65.66	116.83	95.4	111.05	45.74
Merged-chr6-50132862-2	chr6	50132757	50132957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	21997.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	19.79	7.04	19.97	17.29	21.68	26.03	25.58	32.02	16.52	7.03	9.04	6.58
Merged-chr1-161897385-3	chr1	161897289	161897489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20707.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	33.52	19.37	34.8	26.55	62.59	49.23	58.13	53.07	39.14	31.63	47.23	32.58
Merged-chr2-170147830-3	chr2	170147678	170147878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5103.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	24.63	11.07	5.7	22.12	14.73	11.29	19.6	24.06	25.37	23.6	29.14	21.3
Merged-chr2-158028303-3	chr2	158028211	158028411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291136)	promoter-TSS (NM_001291136)	123.0	NM_029282	75425.0	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding	48.05	46.03	42.78	19.31	32.32	34.49	34.88	32.16	40.52	31.63	29.14	43.54
Merged-chr9-99479433-3	chr9	99479351	99479551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028768, exon 22 of 22)	3' UTR (NM_028768, exon 22 of 22)	9030.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	21.0	17.86	28.52	43.44	42.96	26.34	29.56	56.13	36.39	27.11	50.75	34.46
Merged-chr14-79426492-3	chr14	79426396	79426596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024135)	promoter-TSS (NM_001024135)	-15.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	169.59	163.74	154.59	210.75	204.55	236.43	166.42	246.62	213.41	198.33	305.01	139.4
Merged-chr7-131560316-3	chr7	131560207	131560407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-63.0	NM_009774	12237.0	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	151.42	132.81	153.45	146.0	75.68	90.31	62.45	78.0	104.64	93.39	143.71	67.35
Merged-chr15-78325947-3	chr15	78325861	78326061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007780)	promoter-TSS (NM_007780)	-29.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	39.17	20.88	31.95	35.8	47.05	28.22	36.87	39.93	42.48	42.68	45.22	36.03
Merged-chr16-44139774-3	chr16	44139692	44139892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	1.0	NM_001347239	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	151.02	155.95	128.35	153.64	147.69	201.31	154.46	139.88	253.53	243.52	235.66	138.78
Merged-chr13-75789638-3	chr13	75789548	75789748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50237.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	52.9	47.79	59.9	62.74	103.09	70.24	67.76	69.06	65.1	75.82	63.31	24.12
Merged-chr8-66391797-3	chr8	66391713	66391913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	5512.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	25.84	16.1	30.8	32.58	36.41	29.16	38.86	55.65	37.17	32.13	38.69	26.31
Merged-chr10-93484671-3	chr10	93484579	93484779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008517, exon 19 of 19)	exon (NM_008517, exon 19 of 19)	-4089.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	92.07	64.64	91.84	92.1	90.0	87.17	66.1	124.71	52.71	45.19	43.72	23.81
Merged-chr7-27860583-3	chr7	27860492	27860692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	7.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	35.13	48.04	43.35	37.81	42.96	35.12	49.16	41.07	40.91	44.19	67.84	24.43
Merged-chr1-176816975-3	chr1	176816870	176817070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	MLTR11B|LTR|ERVK	2310.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	54.11	70.68	73.02	51.08	70.37	78.39	65.77	61.63	73.76	88.37	120.09	35.4
Merged-chr7-75699982-3	chr7	75699871	75700071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-148367.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	34.32	29.68	29.09	47.06	29.05	22.58	25.91	35.78	24.39	22.09	23.62	14.72
Merged-chr17-33980704-1	chr17	33980604	33980804	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-788.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	3.63	4.02	1.14	0.8	5.73	0.63	0.0	0.45	15.54	20.08	12.56	8.77
Merged-chr7-126975591-3	chr7	126975511	126975711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026638)	promoter-TSS (NM_026638)	235.0	NM_001362232	381922.0	Mm.304201	NM_001362232		Cdiptos	D830044I16Rik	CDIP transferase, opposite strand	protein-coding	21.8	8.55	22.25	13.67	27.82	25.4	15.94	19.01	24.59	25.11	26.63	21.62
Merged-chr12-38778326-3	chr12	38778257	38778457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1725.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	40.78	49.3	31.95	42.23	61.37	99.4	45.51	46.04	110.93	100.42	70.85	38.85
Merged-chr2-105017033-3	chr2	105016942	105017142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145380)	promoter-TSS (NM_145380)	-15.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	44.82	34.71	51.91	49.07	76.91	61.77	63.11	63.42	74.35	81.84	133.16	69.55
Merged-chr16-30587716-4	chr16	30587690	30587890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178069)	promoter-TSS (NM_178069)	-201.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	25.84	24.9	25.67	23.73	26.18	24.77	21.26	19.46	21.83	32.13	16.08	11.9
Merged-chr6-34866425-3	chr6	34866321	34866521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	3275.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	21.4	25.4	26.81	14.48	27.0	16.62	15.61	21.67	41.5	20.08	27.64	11.9
Merged-chr7-16257986-3	chr7	16257890	16258090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	1348.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	157.88	141.86	147.18	98.54	114.55	203.51	139.84	130.49	169.15	172.22	216.57	57.01
Merged-chr11-53617406-3	chr11	53617310	53617510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027491)	promoter-TSS (NR_027491)	-72.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	45.63	21.88	21.68	36.2	33.96	41.39	31.56	52.49	30.68	17.07	36.68	21.62
Merged-chr13-67332506-3	chr13	67332412	67332612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177622)	promoter-TSS (NM_177622)	48.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	122.35	105.39	85.57	117.44	112.5	122.92	79.39	93.81	178.4	135.07	179.89	79.57
Merged-chr4-142081928-3	chr4	142081806	142082006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-2392.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	83.18	59.36	71.31	37.0	76.91	90.0	55.8	68.8	105.62	101.43	115.57	64.22
Merged-chr10-83168608-3	chr10	83168501	83168701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	169216.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	11.71	12.58	10.84	33.78	15.96	20.38	23.92	20.52	11.21	5.02	11.05	7.52
Merged-chr4-139191724-3	chr4	139191645	139191845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1154.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	17.36	12.07	29.09	20.11	41.73	51.74	26.91	31.77	37.76	39.67	45.22	19.42
Merged-chr6-91156711-3	chr6	91156591	91156791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-124.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	58.95	46.53	60.47	59.53	89.59	98.15	59.13	110.33	86.15	65.27	142.71	57.33
Merged-chr11-114818469-3	chr11	114818363	114818563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19539.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	81.16	62.88	58.19	89.69	83.46	94.39	57.13	86.02	68.25	72.3	86.93	57.33
Merged-chr5-77293024-3	chr5	77292928	77293128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17058.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	29.48	42.01	28.52	49.07	44.59	52.37	32.22	60.98	49.96	68.29	74.37	28.82
Merged-chr4-3967749-3	chr4	3967637	3967837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28313.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	29.48	27.17	33.09	33.78	29.05	38.88	22.92	33.84	47.21	34.65	37.18	19.74
Merged-chr4-95053365-3	chr4	95053269	95053469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	72.68	82.0	67.88	98.94	74.05	90.31	85.04	90.76	117.42	96.91	149.74	68.92
Merged-chr12-78919502-3	chr12	78919405	78919605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12567.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	16.56	24.15	28.52	19.71	28.64	33.55	17.61	22.96	33.83	30.13	39.19	27.57
Merged-chr7-139248254-3	chr7	139248184	139248384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-198.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	65.41	88.29	74.16	87.28	90.41	100.97	95.33	71.64	97.36	145.11	114.06	77.69
Merged-chr3-121597407-3	chr3	121597314	121597514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46071.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	58.15	73.7	127.78	68.78	89.59	150.51	88.03	102.06	145.16	101.43	239.18	87.71
Merged-chr3-75299647-3	chr3	75299540	75299740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29562.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	38.76	30.18	46.78	38.21	51.14	72.75	42.85	54.7	79.27	65.78	96.98	27.57
Merged-chr3-116865582-3	chr3	116865480	116865680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009146, intron 1 of 16)	(TCTG)n|Simple_repeat|Simple_repeat	3900.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	46.44	36.22	33.66	39.82	47.46	58.95	35.54	39.48	59.99	69.29	59.8	42.29
Merged-chr13-93243286-3	chr13	93243191	93243391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-50874.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	81.57	76.46	70.17	78.43	58.09	78.71	47.5	80.52	60.19	61.76	73.36	44.48
Merged-chr13-107838322-3	chr13	107838263	107838463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	Lx8|LINE|L1	51701.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	36.75	49.3	40.5	51.88	39.68	31.36	51.82	49.01	54.29	37.16	65.83	38.85
Merged-chr5-20945515-3	chr5	20945430	20945630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	-5459.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	44.01	55.34	59.33	43.84	46.23	73.38	46.17	60.06	58.81	68.79	73.86	51.38
Merged-chr10-59221825-3	chr10	59221656	59221856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	91.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	97.72	118.97	95.27	102.56	101.87	133.9	88.03	95.52	129.62	133.06	149.24	88.97
Merged-chrX-7789713-3	chrX	7789698	7789898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290455)	promoter-TSS (NM_001290455)	-195.0	NM_001290455	54645.0	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	33.52	35.97	18.83	22.52	20.86	31.98	15.28	19.99	34.42	28.62	25.63	24.43
Merged-chr16-21289813-3	chr16	21289726	21289926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	7046.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	54.92	53.32	97.55	84.86	63.0	60.83	45.51	82.32	54.09	62.26	75.37	50.44
Merged-chr3-79171756-1	chr3	79171656	79171856	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25881.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.81	2.01	1.14	3.22	3.27	5.02	2.33	1.49	23.6	30.13	25.12	14.1
Merged-chr17-17005052-3	chr17	17004953	17005153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59050.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	193.01	198.71	223.05	298.43	208.64	173.09	151.8	179.52	171.51	123.52	192.45	101.81
Merged-chr18-53227761-3	chr18	53227640	53227840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17922.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	37.55	28.93	91.84	92.51	50.73	42.96	85.7	84.06	42.68	51.72	99.49	45.11
Merged-chr7-25282418-1	chr7	25282318	25282518	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027882, exon 1 of 20)	5' UTR (NM_027882, exon 1 of 20)	239.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	69.05	65.15	59.9	71.99	74.87	92.82	62.12	54.81	84.77	97.91	97.48	56.39
Merged-chr5-129787202-3	chr5	129787042	129787242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	111.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	92.07	82.75	85.0	80.44	89.59	101.6	101.98	73.21	90.28	122.01	115.07	80.2
Merged-chr10-116950491-3	chr10	116950367	116950567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	-14.0	NM_001003950	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	93.28	88.29	124.36	106.99	96.14	138.6	84.37	148.43	174.07	147.12	174.86	92.41
Merged-chr13-36531697-3	chr13	36531602	36531802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 5 of 5)	MIRc|SINE|MIR	202775.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	27.05	23.39	19.4	22.52	23.32	22.58	28.23	32.94	31.27	25.61	40.2	22.56
Merged-chr13-104178817-3	chr13	104178714	104178914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	-25.0	NM_001361538	81003.0	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	75.51	55.59	80.43	84.06	130.5	126.06	95.33	118.74	151.65	88.87	191.45	98.37
Merged-chr5-21186219-3	chr5	21186115	21186315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-52.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	90.45	82.0	87.85	94.92	114.14	98.78	82.71	112.65	125.88	104.44	140.19	64.85
Merged-chr7-42505771-3	chr7	42505649	42505849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309388)	promoter-TSS (NM_001309388)	4.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	71.07	90.8	122.65	92.1	87.96	116.34	66.43	66.65	133.94	130.05	143.21	85.52
Merged-chr2-104817013-3	chr2	104816905	104817105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123327)	promoter-TSS (NM_001123327)	-309.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	85.2	87.28	70.74	70.79	84.68	75.26	76.07	85.88	97.16	106.95	135.67	69.55
Merged-chr9-48547453-3	chr9	48547352	48547552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52109.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	22.21	21.88	21.68	31.77	36.82	65.85	23.58	35.61	38.55	44.19	33.67	14.41
Merged-chr5-139775751-3	chr5	139775644	139775844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-66.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	56.53	48.04	37.08	45.05	57.68	45.47	28.9	46.29	50.94	35.15	46.23	31.33
Merged-chr6-42264919-3	chr6	42264813	42265013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-72.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	94.08	78.23	99.26	117.84	166.1	163.69	101.98	141.81	155.19	141.09	193.46	92.73
Merged-chr1-75192070-3	chr1	75191971	75192171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026187)	promoter-TSS (NM_026187)	-61.0	NR_109938	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	178.07	161.23	176.27	166.51	177.96	249.29	158.78	213.37	243.5	247.04	310.53	153.5
Merged-chr2-158498424-3	chr2	158498329	158498529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4183.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	21.0	23.64	41.64	32.18	45.82	26.97	24.91	29.07	29.31	25.11	34.17	24.12
Merged-chr1-172423573-3	chr1	172423462	172423662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	47031.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	36.75	23.64	51.34	54.7	31.5	31.36	26.24	39.11	109.75	105.44	121.6	67.35
Merged-chr11-72796184-3	chr11	72796107	72796307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	-19.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	58.15	53.83	47.35	49.07	66.68	76.51	31.22	45.25	56.84	61.26	57.28	38.53
Merged-chr6-53589921-3	chr6	53589784	53589984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16510.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	24.23	31.94	59.9	34.99	36.41	32.61	29.23	27.06	37.37	49.71	49.75	21.3
Merged-chr1-125434739-3	chr1	125434643	125434843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	984.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	81.16	111.18	79.86	47.86	69.96	132.64	77.73	53.02	184.69	168.71	153.26	77.38
Merged-chr9-7763955-3	chr9	7763826	7764026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-151.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	254.8	257.56	262.41	257.81	240.14	362.18	300.28	315.56	372.53	347.46	486.91	217.41
Merged-chr10-118796744-3	chr10	118796658	118796858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72145.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	113.06	109.67	158.59	104.17	138.28	156.16	124.9	137.83	134.34	155.15	177.88	86.77
Merged-chr6-108756119-3	chr6	108756014	108756214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-26945.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	39.57	20.63	49.06	59.93	58.09	53.93	31.56	53.02	43.27	18.58	55.78	22.56
Merged-chr2-133458898-3	chr2	133458788	133458988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93271.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	64.61	83.0	63.32	43.84	64.23	105.36	75.73	81.56	88.12	83.85	107.03	43.23
Merged-chr9-65587080-3	chr9	65586986	65587186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-74.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	29.48	21.38	31.95	18.1	33.96	32.93	20.26	27.39	28.91	30.13	21.61	15.35
Merged-chr6-86526669-3	chr6	86526574	86526774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-485.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	48.05	52.07	56.48	53.09	45.41	70.55	43.18	47.83	64.91	83.35	73.36	51.06
Merged-chr4-40703138-3	chr4	40703048	40703248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025545)	promoter-TSS (NM_025545)	46.0	NM_001025444	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	79.14	96.34	66.17	109.8	86.32	107.56	68.1	68.58	90.48	90.38	75.87	72.05
Merged-chr4-24865014-1	chr4	24864914	24865114	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13890.0	NM_001033531	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	7.67	2.77	3.42	10.05	4.91	15.99	12.62	22.32	6.1	8.03	2.51	4.07
Merged-chr19-5488432-3	chr19	5488341	5488541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-62.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	94.49	95.58	99.26	78.03	76.5	101.91	63.44	58.65	113.49	121.51	98.99	76.44
Merged-chr9-13835457-3	chr9	13835372	13835572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176836, intron 5 of 9)	intron (NM_176836, intron 5 of 9)	7756.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	55.72	44.77	58.19	72.8	71.18	63.66	61.45	123.14	78.48	47.2	83.91	48.87
Merged-chr7-128524203-3	chr7	128524081	128524281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013863, intron 1 of 3)	CpG	598.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	39.57	45.28	40.5	21.32	32.32	79.65	34.55	40.32	52.52	51.21	67.84	42.29
Merged-chr17-36271815-3	chr17	36271721	36271921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	183.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	35.53	53.32	57.62	58.32	30.27	77.77	71.42	53.72	49.57	46.7	41.2	34.15
Merged-chr18-36801806-3	chr18	36801710	36801910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027885)	promoter-TSS (NR_027885)	47.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	157.48	164.0	147.18	151.23	149.32	199.43	105.96	155.64	168.37	200.84	163.81	104.94
Merged-chr4-93334717-3	chr4	93334644	93334844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	767.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	97.31	97.59	91.27	109.0	150.55	120.1	101.31	114.7	111.33	95.4	186.92	75.5
Merged-chr10-17518716-3	chr10	17518615	17518815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-204513.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	123.97	115.7	109.53	138.36	142.37	157.1	87.69	115.09	138.67	155.15	133.16	62.65
Merged-chr6-53592513-3	chr6	53592431	53592631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	19157.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	118.72	93.57	108.96	79.23	135.41	153.65	107.96	106.71	151.84	197.83	153.76	105.26
Merged-chr10-8240850-3	chr10	8240765	8240965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277960.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	62.18	53.32	79.86	45.45	89.59	95.33	63.11	59.16	81.63	95.9	78.89	50.44
Merged-chr9-79793516-3	chr9	79793423	79793623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133718)	promoter-TSS (NM_133718)	-93.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	185.75	176.07	173.42	198.69	211.92	246.15	201.96	199.4	231.31	264.61	320.58	129.38
Merged-chr4-58563668-3	chr4	58563527	58563727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10136.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	68.24	24.65	63.89	50.68	67.09	44.53	52.15	75.14	44.45	44.19	64.32	32.89
Merged-chr9-45281076-3	chr9	45280962	45281162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11913.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	23.82	12.32	18.25	17.29	25.36	28.85	18.6	26.52	35.99	24.1	23.11	13.78
Merged-chr14-30625564-1	chr14	30625464	30625664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	CpG	644.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.86	16.1	16.54	3.62	10.64	10.35	18.27	9.59	10.82	9.54	9.04	4.39
Merged-chr7-127119287-3	chr7	127119184	127119384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2745.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	23.82	28.17	48.49	22.12	49.5	31.98	22.59	43.88	64.12	53.22	61.81	27.25
Merged-chr2-102899403-3	chr2	102899315	102899515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2250.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	13.73	15.85	24.53	23.73	18.0	20.38	28.57	35.19	45.24	28.62	54.77	28.82
Merged-chr19-4125855-3	chr19	4125741	4125941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	17.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	156.67	173.05	146.61	129.51	188.19	222.64	113.27	132.73	188.03	230.47	229.13	139.09
Merged-chr7-131410587-3	chr7	131410480	131410680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025826)	promoter-TSS (NM_025826)	-21.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	186.96	188.39	187.11	175.36	173.05	238.0	129.21	162.95	284.02	275.66	258.28	163.53
Merged-chr9-41160984-3	chr9	41160885	41161085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2923.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	37.15	31.69	38.79	21.32	34.77	44.53	33.88	34.88	49.76	44.69	37.18	25.37
Merged-chr3-104220522-3	chr3	104220435	104220635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159354)	promoter-TSS (NM_001159354)	-129.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	120.33	106.9	122.65	140.37	135.82	171.21	123.9	169.71	225.01	205.86	334.15	146.61
Merged-chr8-82874338-2	chr8	82874219	82874419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	10963.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.23	3.27	3.42	5.63	27.82	21.95	36.54	31.29	24.78	38.16	47.23	17.86
Merged-chr1-131760237-1	chr1	131760137	131760337	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	16215.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	5.25	1.76	2.28	1.21	20.86	14.74	10.63	5.36	4.33	4.52	5.53	1.25
Merged-chr4-141147124-3	chr4	141147019	141147219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-803.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	16.56	15.34	38.22	22.52	29.05	20.07	12.95	26.55	21.83	25.61	28.14	20.68
Merged-chr4-119966316-1	chr4	119966216	119966416	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	151638.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	33.11	29.18	61.61	57.11	57.27	82.78	59.79	74.83	72.97	71.3	78.89	49.5
Merged-chr16-93711710-3	chr16	93711600	93711800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-207.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	219.66	241.72	229.32	172.54	225.01	309.5	178.04	205.82	296.41	286.2	368.32	163.21
Merged-chr16-17531009-3	chr16	17530869	17531069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	83.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	70.26	94.83	96.98	79.23	81.82	88.74	96.99	65.52	102.67	105.94	98.99	73.62
Merged-chr7-19604503-3	chr7	19604404	19604604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125835)	promoter-TSS (NR_125835)	-18.0	NR_125836	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	92.47	70.93	76.44	65.56	92.87	92.19	68.76	82.23	80.84	100.92	109.54	51.38
Merged-chr2-173022368-2	chr2	173022271	173022471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019547, intron 1 of 3)	CpG	469.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	12.92	17.86	2.85	6.03	18.41	27.59	17.27	13.04	26.16	22.09	17.59	15.98
Merged-chr10-117859123-3	chr10	117859034	117859234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-13160.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	34.32	45.02	73.59	58.32	46.23	63.34	33.55	50.13	45.83	42.18	98.49	28.19
Merged-chr14-55745674-3	chr14	55745585	55745785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	-1.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	70.26	53.83	86.14	68.78	73.64	72.12	32.55	58.77	88.51	91.89	79.89	62.65
Merged-chr16-23332931-3	chr16	23332818	23333018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	42448.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	27.86	19.62	23.39	28.96	30.27	19.76	22.92	26.8	28.91	33.64	42.71	14.1
Merged-chr14-55557250-3	chr14	55557197	55557397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2732.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	57.34	41.0	54.19	43.04	84.68	61.77	51.49	67.68	47.4	54.23	60.8	43.23
Merged-chr4-126254992-3	chr4	126254883	126255083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	1336.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	14.94	16.85	18.83	19.71	20.86	31.67	15.94	13.46	34.42	20.59	36.68	21.62
Merged-chr3-31057478-3	chr3	31057377	31057577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18511.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	50.47	47.29	56.48	59.93	59.32	70.87	29.56	73.65	98.74	72.81	102.0	59.83
Merged-chr8-84066662-3	chr8	84066580	84066780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-156.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	273.37	298.56	283.52	281.14	274.1	416.11	271.38	290.3	348.73	399.68	420.08	223.67
Merged-chr9-40757946-3	chr9	40757865	40758065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43308.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	37.96	22.13	33.66	43.84	35.59	37.63	23.58	32.69	31.67	22.59	40.7	29.45
Merged-chr4-63403305-3	chr4	63403210	63403410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001045514, exon 1 of 22)	5' UTR (NM_001045514, exon 1 of 22)	135.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	31.5	42.26	34.8	32.18	33.55	62.71	36.54	25.43	34.62	49.21	40.2	24.12
Merged-chr4-88094595-3	chr4	88094502	88094702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	-28.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	185.34	176.57	208.22	194.66	221.73	237.69	192.33	276.17	253.73	212.39	371.84	158.2
Merged-chr14-32785913-3	chr14	32785807	32786007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163616)	promoter-TSS (NM_001163616)	-56.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	73.49	38.74	86.71	81.65	67.09	58.32	45.51	72.9	53.11	42.18	67.33	45.42
Merged-chr7-44453496-3	chr7	44453387	44453587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198250, intron 2 of 2)	intron (NM_198250, intron 2 of 2)	11000.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	25.84	26.91	17.68	13.27	22.09	31.67	15.28	19.74	25.37	25.11	34.67	15.35
Merged-chr17-34638105-3	chr17	34638010	34638210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6773.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	36.34	25.91	42.21	25.34	31.09	41.08	19.27	24.98	31.08	36.65	43.72	26.63
Merged-chr1-174053238-3	chr1	174053142	174053342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2867.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	23.82	38.74	21.68	20.11	67.5	142.99	110.95	62.22	82.02	142.1	68.84	27.25
Merged-chr2-128125904-3	chr2	128125797	128125997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-141.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	105.79	92.56	115.8	97.33	112.5	155.85	76.4	84.25	130.01	112.97	83.91	74.56
Merged-chr1-37496216-3	chr1	37496098	37496298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290801, intron 2 of 14)	intron (NM_001290801, intron 2 of 14)	-7593.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	23.02	24.4	62.18	27.75	46.64	26.65	18.6	27.28	43.66	42.68	31.66	22.87
Merged-chr10-62287848-3	chr10	62287719	62287919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 13 of 21)	intron (NM_010438, intron 13 of 21)	35381.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	48.05	49.55	75.3	78.43	83.05	50.8	63.44	101.64	54.88	62.26	93.46	53.26
Merged-chr4-128667355-3	chr4	128667267	128667467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	12665.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	44.82	36.97	50.77	31.77	39.68	35.12	26.91	19.65	45.04	38.16	43.72	32.58
Merged-chr18-25681487-4	chr18	25681417	25681617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-1769.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	27.46	39.49	42.78	56.31	29.05	24.15	38.53	36.42	18.29	20.59	23.11	18.48
Merged-chr14-105779482-2	chr14	105779369	105779569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117350.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	14.13	14.34	13.69	13.27	14.73	15.68	13.62	18.5	5.51	4.02	10.55	3.76
Merged-chr4-46554854-3	chr4	46554754	46554954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	11586.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	146.58	144.13	215.06	197.48	157.91	195.04	180.04	204.06	201.8	171.22	235.16	144.42
Merged-chr10-25297136-3	chr10	25297057	25297257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	CpG	2006.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	41.99	39.24	26.81	36.2	56.46	62.09	23.92	43.79	52.91	37.66	69.34	26.0
Merged-chr11-89000103-2	chr11	88999986	89000186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	683.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	14.54	10.31	22.25	9.25	16.77	23.2	15.94	8.86	35.8	35.65	44.22	11.59
Merged-chr7-126897500-3	chr7	126897406	126897606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026827, intron 1 of 5)	intron (NM_026827, intron 1 of 5)	772.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	32.71	34.96	35.94	31.77	40.5	43.9	20.59	32.27	54.88	54.23	45.73	35.71
Merged-chr13-111896520-3	chr13	111896394	111896594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28558.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	16.15	13.33	40.5	47.46	57.68	29.48	42.19	73.18	40.32	19.08	48.24	30.07
Merged-chr3-90383839-3	chr3	90383739	90383939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6099.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	46.84	38.48	77.58	36.2	33.55	61.77	37.54	67.23	38.94	25.61	54.77	33.52
Merged-chr19-23135810-5	chr19	23135728	23135928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5398.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	27.46	22.64	24.53	27.75	40.5	54.25	46.17	38.69	48.58	67.78	54.27	41.98
Merged-chr2-131106149-1	chr2	131106049	131106249	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19384.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.23	2.01	0.0	0.0	20.46	23.83	35.21	31.12	5.7	1.0	3.01	1.57
Merged-chr7-105633651-3	chr7	105633554	105633754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-83.0	NM_001285871	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	75.91	54.08	65.6	78.83	106.78	73.69	57.47	73.21	71.79	79.83	103.01	37.28
Merged-chr1-165717890-3	chr1	165717797	165717997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9803.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	95.7	65.9	83.29	92.51	69.55	56.44	106.96	94.26	51.93	53.73	76.88	26.94
Merged-chr17-50292888-3	chr17	50292777	50292977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010021, intron 1 of 10)	CpG	743.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	70.26	94.07	77.01	74.0	115.78	110.38	62.78	78.48	101.88	98.41	154.76	50.12
Merged-chr3-20538707-3	chr3	20538594	20538794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-171517.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	80.36	72.69	98.69	139.97	72.82	83.1	92.34	116.13	99.13	66.78	107.03	49.81
Merged-chr17-29841901-3	chr17	29841804	29842004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	45978.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	45.23	33.96	37.08	43.04	46.23	49.86	25.91	52.63	43.66	40.17	66.33	23.81
Merged-chr14-17743852-3	chr14	17743743	17743943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	82883.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	34.32	55.59	86.71	87.68	27.0	35.12	36.87	55.79	40.71	38.16	41.2	27.88
Merged-chr5-31698558-3	chr5	31698462	31698662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	512.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	138.5	124.25	144.9	146.4	149.73	193.47	108.29	107.27	174.27	174.73	171.35	98.99
Merged-chr9-54917181-3	chr9	54917099	54917299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177351)	promoter-TSS (NM_177351)	-91.0	NM_177351	235386.0	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	21.8	21.63	23.39	22.93	50.73	66.48	34.88	39.36	40.32	33.64	43.72	40.1
Merged-chr17-80772677-3	chr17	80772585	80772785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44660.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	45.23	45.78	51.91	56.31	109.23	82.78	70.75	95.8	73.56	84.86	104.01	38.22
Merged-chr8-107030230-3	chr8	107030138	107030338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1088.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	74.7	65.4	58.19	55.5	74.46	100.03	72.41	68.02	98.93	76.82	101.0	72.05
Merged-chr2-28583258-3	chr2	28583158	28583358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290484)	promoter-TSS (NM_001290484)	21.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	34.73	33.7	37.08	35.39	35.18	49.86	31.22	25.85	43.47	52.22	44.22	28.19
Merged-chr7-17024977-3	chr7	17024891	17025091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2923.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	41.59	31.19	59.9	49.47	40.91	39.51	43.51	68.02	70.81	57.24	114.06	33.21
Merged-chr15-79742151-3	chr15	79742051	79742251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045069)	promoter-TSS (NR_045069)	385.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	92.07	95.83	70.74	47.46	104.32	119.16	64.77	60.62	132.17	132.05	116.07	50.75
Merged-chr5-114855417-3	chr5	114855337	114855537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1723.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	76.32	65.65	67.31	57.51	39.27	50.49	33.88	49.07	54.09	60.75	75.87	49.18
Merged-chr12-69425081-3	chr12	69424981	69425181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50469.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	63.4	68.67	78.15	94.52	75.68	87.8	67.43	120.34	20.65	24.1	32.16	16.6
Merged-chr1-54888729-3	chr1	54888629	54888829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	37658.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	32.71	28.17	43.93	34.99	42.14	42.33	52.48	38.5	34.42	22.09	35.17	29.45
Merged-chr15-88745523-3	chr15	88745412	88745612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	-6199.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	48.46	24.9	31.95	46.66	43.36	48.29	45.84	66.93	36.39	34.65	45.22	21.3
Merged-chr7-125491518-3	chr7	125491424	125491624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026330)	promoter-TSS (NM_026330)	18.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	109.83	119.22	122.65	112.62	131.73	132.01	87.03	109.21	119.59	111.47	126.63	78.32
Merged-chr5-114827638-3	chr5	114827523	114827723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4155.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	18.98	23.14	20.54	6.44	20.86	39.51	23.58	24.81	34.81	19.08	50.25	24.75
Merged-chr8-23237762-3	chr8	23237667	23237867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	-99.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	206.74	206.76	243.58	298.43	281.46	285.04	250.46	329.95	280.67	299.25	408.02	146.61
Merged-chr8-70839778-3	chr8	70839721	70839921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-101.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	213.2	224.87	253.28	231.67	266.74	310.12	224.88	211.99	310.18	378.59	387.41	218.66
Merged-chr6-126939603-3	chr6	126939514	126939714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	-27.0	NM_009013	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	114.68	102.62	96.98	106.99	115.37	124.49	112.94	114.62	137.68	139.59	190.94	101.19
Merged-chrX-48433696-3	chrX	48433584	48433784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	29448.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	27.86	33.96	31.38	37.0	47.87	34.81	29.9	58.46	41.3	41.17	59.8	38.85
Merged-chr18-30272821-3	chr18	30272716	30272916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-49.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	138.91	121.74	131.78	160.08	153.0	171.21	115.6	211.21	144.57	155.15	233.65	84.9
Merged-chr2-59645191-1	chr2	59645091	59645291	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1578.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.23	2.01	7.99	2.82	10.23	4.7	5.31	8.19	4.72	2.01	9.04	4.39
Merged-chr4-105248206-5	chr4	105248112	105248312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90865.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	17.36	30.18	20.54	29.36	21.27	42.65	35.21	19.77	39.14	42.18	40.2	34.15
Merged-chr1-166430082-3	chr1	166429992	166430192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20264.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	83.99	93.57	102.11	144.79	133.78	162.74	130.54	158.8	148.3	161.68	188.43	95.86
Merged-chr18-36194822-3	chr18	36194715	36194915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	2345.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	40.78	36.47	59.9	47.86	29.05	23.52	20.26	30.87	27.73	17.57	27.64	29.13
Merged-chr2-71338277-3	chr2	71338174	71338374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	29280.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	86.82	69.92	81.0	100.15	90.82	88.11	74.07	111.73	107.79	107.95	113.06	60.15
Merged-chr16-24577984-3	chr16	24577897	24578097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	48683.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	17.77	19.12	31.38	26.55	42.55	21.64	30.56	26.36	37.76	24.1	32.16	19.42
Merged-chr17-7869294-3	chr17	7869192	7869392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56708.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	26.25	21.88	27.95	28.56	37.23	24.15	20.59	29.55	35.21	20.59	27.64	25.06
Merged-chr1-161351145-3	chr1	161351055	161351255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	-44283.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	56.53	51.31	44.5	49.47	55.23	45.47	14.62	33.48	52.52	62.76	64.32	30.7
Merged-chr13-56184499-3	chr13	56184422	56184622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5637.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	40.78	30.69	55.33	63.15	60.96	59.27	27.9	60.25	48.19	49.21	50.75	42.6
Merged-chr2-155930120-3	chr2	155930031	155930231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018888, exon 1 of 10)	5' UTR (NM_018888, exon 1 of 10)	179.0	NM_001355443	56046.0	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	53.3	25.15	33.66	29.36	35.59	26.65	26.91	37.23	28.32	17.07	29.14	23.81
Merged-chr7-28442961-3	chr7	28442862	28443062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039192, intron 3 of 6)	intron (NM_001039192, intron 3 of 6)	2025.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	155.46	104.89	123.22	90.49	133.78	141.11	82.05	94.29	135.71	146.61	138.69	80.82
Merged-chr18-68059579-3	chr18	68059471	68059671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126398.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	18.57	9.81	10.27	22.12	18.0	19.44	14.95	21.79	17.11	15.57	28.64	9.4
Merged-chr2-73512212-3	chr2	73512086	73512286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	17301.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	66.22	54.33	80.43	61.54	43.36	60.83	51.49	86.89	58.02	66.78	40.7	39.47
Merged-chr5-143909904-3	chr5	143909822	143910022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008886)	promoter-TSS (NM_008886)	-79.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	103.37	100.36	96.41	92.1	118.23	139.23	70.42	99.51	137.88	115.48	168.83	63.91
Merged-chr11-3153181-2	chr11	3153079	3153279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	29158.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	28.27	27.42	35.37	16.89	44.18	50.17	51.49	36.14	0.2	1.51	0.5	0.63
Merged-chrX-48594602-3	chrX	48594507	48594707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166648)	promoter-TSS (NM_001166648)	12.0	NM_001166648	208968.0	Mm.293819	NM_153532	ENSMUSG00000036916	Zfp280c	BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584	zinc finger protein 280C	protein-coding	26.65	24.9	25.67	28.15	55.64	40.45	34.88	37.68	50.55	45.69	66.33	26.63
Merged-chr17-25985777-3	chr17	25985684	25985884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347334)	promoter-TSS (NM_001347334)	12.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	56.13	64.14	81.0	74.41	89.18	114.77	61.45	77.08	100.11	99.92	112.56	58.89
Merged-chr5-35893344-1	chr5	35893244	35893444	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027373)	promoter-TSS (NM_027373)	25.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	5.65	8.8	6.28	5.23	28.64	31.98	14.62	29.72	7.47	2.51	10.05	4.39
Merged-chr4-145222206-3	chr4	145222106	145222306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	24664.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	40.78	39.49	93.55	86.88	58.5	42.65	88.03	106.32	79.66	60.25	121.6	94.92
Merged-chr4-63562385-3	chr4	63562294	63562494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	2167.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	36.34	28.67	31.38	42.23	36.41	32.3	21.59	53.55	33.83	26.11	42.21	21.3
Merged-chr16-24393870-3	chr16	24393791	24393991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037954)	promoter-TSS (NR_037954)	-236.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	19.38	16.35	5.7	16.89	18.41	11.92	8.64	7.54	19.28	7.53	13.06	11.28
Merged-chr7-4080726-3	chr7	4080612	4080812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-17508.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	40.38	30.94	47.35	56.71	35.59	55.5	33.22	35.58	36.39	50.71	80.9	33.21
Merged-chr13-116987468-3	chr13	116987375	116987575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	LTR31|LTR|ERV1	38041.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	90.85	58.35	81.0	103.77	34.36	43.59	35.21	51.34	41.5	38.66	49.75	29.45
Merged-chr5-138171200-3	chr5	138171089	138171289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	77.0	NM_001356577	17220.0	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	62.18	57.85	45.07	49.87	59.73	63.97	48.83	42.17	78.28	79.83	74.87	32.89
Merged-chr13-23885738-3	chr13	23885647	23885847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	15474.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	20.19	23.64	18.83	16.49	28.64	37.0	22.59	35.8	53.3	36.65	47.74	19.11
Merged-chr9-21015968-3	chr9	21015859	21016059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	19.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	97.72	89.54	51.34	26.55	80.18	145.81	46.84	20.89	93.43	91.89	87.93	23.81
Merged-chr7-110381724-1	chr7	110381624	110381824	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	160021.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.23	3.02	1.71	0.8	2.05	13.48	4.32	9.08	7.87	10.04	5.53	4.39
Merged-chr15-63616927-3	chr15	63616779	63616979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137271.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	50.47	19.87	57.05	42.63	35.59	25.4	50.82	75.25	42.48	16.57	58.29	21.62
Merged-chr14-75192951-3	chr14	75192837	75193037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-49350.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	21.8	44.27	38.79	21.32	46.23	79.96	25.58	16.99	72.58	36.15	38.19	29.13
Merged-chr6-146776828-3	chr6	146776711	146776911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001346666, exon 12 of 12)	3' UTR (NM_001346666, exon 12 of 12)	-28719.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	26.25	18.11	25.1	43.04	42.96	59.27	57.47	64.21	58.22	59.25	93.96	27.57
Merged-chr19-55232381-3	chr19	55232279	55232479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	8857.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	241.87	244.74	268.69	303.66	257.33	356.85	258.1	253.96	348.92	365.53	408.52	186.71
Merged-chr10-31313065-1	chr10	31312965	31313165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	-340.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	17.36	41.0	39.36	40.22	37.64	46.1	73.08	39.62	34.81	46.19	47.74	26.63
Merged-chr3-61416105-3	chr3	61416009	61416209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51602.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	109.02	104.89	111.81	103.37	92.87	136.72	110.61	104.72	153.61	130.05	95.97	67.67
Merged-chr5-113672642-3	chr5	113672559	113672759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22269.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	59.36	56.34	49.63	57.11	100.23	124.8	86.03	85.77	89.49	125.02	140.19	51.69
Merged-chr9-44435969-3	chr9	44435868	44436068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033469, exon 3 of 5)	exon (NM_001033469, exon 3 of 5)	4900.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	17.77	18.11	27.38	30.97	28.64	25.09	13.29	22.04	28.91	26.61	27.13	20.36
Merged-chr14-25789415-3	chr14	25789313	25789513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20557.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	29.48	28.67	15.4	37.81	37.23	33.24	22.92	40.68	30.68	43.18	51.25	20.05
Merged-chr2-29125518-2	chr2	29125440	29125640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_198033, exon 1 of 26)	5' UTR (NM_198033, exon 1 of 26)	548.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	11.71	12.07	19.4	18.9	14.32	23.2	21.92	13.04	15.93	13.56	21.1	16.6
Merged-chr15-36282552-1	chr15	36282452	36282652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357631, intron 1 of 7)	CpG	595.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	20.19	9.31	9.7	19.71	18.82	19.76	12.29	12.73	21.05	27.11	23.62	18.17
Merged-chr6-92092253-3	chr6	92092153	92092353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347342)	promoter-TSS (NM_001347342)	-180.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	234.2	178.84	193.38	193.86	232.78	206.64	206.28	252.39	234.26	276.16	331.14	156.32
Merged-chr18-80169574-3	chr18	80169476	80169676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16663.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	55.32	72.44	50.77	50.27	60.96	48.6	45.18	72.98	65.89	63.27	102.0	48.87
Merged-chr2-11197200-3	chr2	11197087	11197287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	24805.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	36.75	32.45	56.48	49.87	55.64	55.19	44.84	69.11	75.53	76.32	91.45	48.87
Merged-chr19-57361656-1	chr19	57361556	57361756	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	647.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	6.06	23.14	10.27	10.46	11.86	13.17	22.26	14.41	19.67	21.09	17.08	15.66
Merged-chr8-35466915-2	chr8	35466801	35467001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28632.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	46.03	35.21	70.74	60.73	54.82	47.66	63.78	77.47	10.62	2.51	5.53	4.39
Merged-chr1-120504831-3	chr1	120504740	120504940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010766, exon 1 of 17)	5' UTR (NM_010766, exon 1 of 17)	184.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	24.23	25.4	59.33	37.0	19.64	14.74	17.27	29.97	29.11	29.62	34.67	20.36
Merged-chr19-32276998-3	chr19	32276885	32277085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65972.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	60.57	48.04	49.06	55.5	91.23	90.31	65.44	81.79	71.99	69.79	97.48	42.6
Merged-chr6-125096148-4	chr6	125096075	125096275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	12.0	NM_145979	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	57.34	74.2	29.09	30.16	32.32	76.83	24.25	18.39	69.82	98.91	59.8	22.56
Merged-chr2-126476289-3	chr2	126476194	126476394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15259.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	73.89	41.25	97.55	57.92	79.78	98.46	97.66	124.68	84.18	87.37	100.5	72.36
Merged-chr7-92637133-3	chr7	92637054	92637254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-12.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	83.99	59.61	59.9	77.22	84.68	87.8	49.49	85.07	124.11	80.84	126.12	55.76
Merged-chr7-90443631-3	chr7	90443472	90443672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145151, exon 1 of 1)	exon (NM_145151, exon 1 of 1)	791.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	25.84	25.66	18.83	20.11	24.14	22.26	28.9	17.94	20.46	28.62	21.1	12.53
Merged-chr4-132274353-3	chr4	132274244	132274444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025579)	promoter-TSS (NM_025579)	-31.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	54.11	41.0	49.63	54.3	47.46	60.21	31.89	42.0	80.64	57.24	88.94	59.21
Merged-chr8-81015023-3	chr8	81014912	81015112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027554)	promoter-TSS (NM_027554)	-106.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	183.73	211.79	172.85	183.81	217.64	253.99	188.67	162.17	232.29	245.03	226.62	130.63
Merged-chr17-84146028-3	chr17	84145925	84146125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41922.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	48.46	53.58	43.35	53.89	64.64	51.43	19.6	35.8	48.58	37.16	42.71	36.97
Merged-chr8-120539535-3	chr8	120539425	120539625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106159)	TTS (NR_106159)	829.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	39.17	31.19	61.61	51.48	52.37	51.74	52.15	70.07	50.16	41.17	65.83	42.92
Merged-chr14-77836951-3	chr14	77836865	77837065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 5 of 5)	intron (NM_025384, intron 5 of 5)	37952.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	57.74	43.77	73.59	98.14	75.28	80.9	97.66	107.22	81.23	109.46	116.07	67.35
Merged-chr1-128004587-3	chr1	128004488	128004688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 8 of 20)	B4A|SINE|B4	97883.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	32.3	31.94	38.79	41.02	42.14	54.25	30.56	50.92	55.47	40.67	70.35	31.64
Merged-chr4-138325752-3	chr4	138325696	138325896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026880, intron 1 of 7)	CpG	500.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	53.7	64.39	58.76	61.13	51.55	49.23	38.86	39.48	62.74	63.27	74.87	39.78
Merged-chr4-152325778-3	chr4	152325683	152325883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	57.0	NR_102291	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	144.16	134.06	128.92	127.5	190.23	217.31	135.53	141.87	186.66	225.95	237.67	105.88
Merged-chr1-93342865-3	chr1	93342770	93342970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-82.0	NM_080850	269224.0	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	85.2	103.38	79.29	98.14	111.28	133.27	103.97	122.89	136.7	139.08	163.81	79.88
Merged-chr11-121421340-3	chr11	121421252	121421452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-21.0	NM_181420	238024.0	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	93.28	64.39	103.82	83.26	103.91	132.95	61.45	82.99	96.57	89.37	136.68	58.58
Merged-chr11-74494580-2	chr11	74494494	74494694	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	95564.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	9.29	2.26	5.13	2.82	24.55	27.91	11.63	18.76	27.73	22.09	28.64	16.92
Merged-chr7-140912434-3	chr7	140912345	140912545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6381.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	14.94	16.1	27.38	22.12	27.0	29.48	26.24	19.57	23.6	26.11	45.22	20.99
Merged-chr17-56009224-3	chr17	56009128	56009328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	27.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	55.32	46.78	50.77	40.62	75.28	78.71	47.83	68.52	63.73	46.19	84.92	36.97
Merged-chr17-54003739-3	chr17	54003624	54003824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-13093.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	49.67	48.04	62.18	72.4	63.0	76.83	81.05	114.2	65.69	54.73	80.9	40.1
Merged-chr7-48908906-3	chr7	48908821	48909021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27325.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	40.78	33.7	48.49	42.23	52.77	53.31	47.17	53.19	42.48	47.7	73.86	29.45
Merged-chr5-113908867-3	chr5	113908787	113908987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-181.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	114.68	116.46	142.61	91.3	150.14	156.16	92.01	101.72	167.97	164.19	210.54	100.56
Merged-chr5-124025312-3	chr5	124025210	124025410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6950.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	44.42	47.79	39.93	42.23	52.37	67.42	46.5	58.54	64.71	37.16	68.84	42.92
Merged-chr10-125390187-3	chr10	125390090	125390290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61227.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	57.34	35.21	62.18	49.87	65.87	59.58	50.49	88.63	67.27	69.79	104.52	55.13
Merged-chr8-70172384-3	chr8	70172277	70172477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293797)	promoter-TSS (NM_001293797)	-31.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	75.51	53.83	54.19	57.92	112.91	113.83	53.15	85.15	95.39	93.39	99.49	48.87
Merged-chr16-75961251-3	chr16	75961148	75961348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39536.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	134.46	119.22	134.06	100.95	144.0	142.36	99.65	141.53	145.94	191.8	211.55	85.52
Merged-chr6-124730018-3	chr6	124729917	124730117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	3137.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	55.72	42.51	65.6	115.43	59.32	71.18	50.82	74.94	100.31	90.88	123.11	66.41
Merged-chr11-115420045-3	chr11	115419954	115420154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183285)	promoter-TSS (NM_183285)	-72.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	104.18	106.65	87.85	78.83	121.91	127.62	65.77	77.64	115.26	114.98	109.04	65.79
Merged-chr11-68417988-3	chr11	68417887	68418087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-14138.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	41.99	35.97	22.82	33.38	44.18	42.33	27.9	37.21	41.89	44.19	46.23	24.75
Merged-chr9-109082451-3	chr9	109082342	109082542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	-54.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	42.8	32.45	37.08	30.16	52.37	39.82	25.58	41.66	57.83	48.2	57.28	33.83
Merged-chr4-151841926-1	chr4	151841826	151842026	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	19842.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	8.08	3.02	9.13	17.7	9.0	8.15	6.64	20.44	6.88	3.51	12.56	6.89
Merged-chr15-6334974-3	chr15	6334871	6335071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	35182.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	21.0	20.37	36.51	52.69	34.77	15.05	58.46	78.22	29.9	21.09	41.2	30.07
Merged-chr17-42876597-3	chr17	42876484	42876684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009847)	promoter-TSS (NM_009847)	-160.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	68.24	75.71	50.2	71.59	51.55	74.0	79.39	47.52	71.0	72.3	99.99	50.75
Merged-chr18-9735015-3	chr18	9734897	9735097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	27349.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	58.95	60.12	74.73	61.54	69.14	64.28	56.14	75.48	43.86	66.28	62.81	33.21
Merged-chr11-21091172-3	chr11	21091088	21091288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-136.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	196.24	175.82	139.19	165.3	216.82	276.88	151.47	188.33	244.88	336.41	313.55	145.36
Merged-chr11-69838445-3	chr11	69838344	69838544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-81.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	176.86	176.32	138.62	150.82	180.01	222.01	143.17	154.26	205.93	210.88	217.57	132.51
Merged-chr2-13558801-3	chr2	13558695	13558895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14131.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	155.87	151.92	177.98	163.7	170.6	164.0	118.92	187.99	229.93	208.37	274.36	168.22
Merged-chr1-4807781-3	chr1	4807684	4807884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008866)	promoter-TSS (NM_008866)	-39.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	95.7	85.02	102.68	114.22	115.78	110.38	109.62	126.28	134.34	107.45	164.81	78.94
Merged-chr10-34208348-3	chr10	34208249	34208449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-798.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	39.57	31.69	24.53	18.9	34.77	41.39	35.54	29.41	35.6	32.13	24.12	17.54
Merged-chr17-5316746-3	chr17	5316647	5316847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 11 of 19)	intron (NM_001085355, intron 11 of 19)	102020.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	23.82	19.37	27.38	42.63	17.18	54.25	44.18	52.07	21.05	10.54	29.14	16.6
Merged-chr4-151057561-3	chr4	151057463	151057663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009498, intron 1 of 4)	CpG	390.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	27.46	33.7	22.82	26.95	31.09	34.18	30.23	32.24	41.11	31.63	60.3	31.64
Merged-chr11-83302692-3	chr11	83302562	83302762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-35.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	45.63	42.76	29.09	25.74	43.77	68.99	26.91	23.27	61.96	51.21	60.8	27.88
Merged-chr15-62046486-3	chr15	62046394	62046594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	7237.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	42.4	42.51	35.37	46.25	40.91	47.35	24.58	49.35	72.18	61.76	115.07	49.81
Merged-chr5-114690346-3	chr5	114690230	114690430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	605.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	31.09	32.7	27.38	16.09	27.0	69.3	24.91	23.75	54.88	71.8	49.75	23.81
Merged-chr10-119001158-3	chr10	119001056	119001256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49343.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	27.86	26.66	26.81	24.53	63.82	105.99	54.14	55.26	78.68	68.29	78.39	37.59
Merged-chr4-132567583-3	chr4	132567482	132567682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	3515.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	104.99	102.12	85.0	46.66	130.09	204.76	97.33	65.1	160.1	211.89	132.15	69.55
Merged-chr19-8212639-3	chr19	8212552	8212752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172776, intron 2 of 9)	L1_Mus2|LINE|L1	6248.0	NM_172776	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	37.55	44.02	52.48	41.43	47.87	56.76	60.46	24.0	40.71	30.63	66.33	29.76
Merged-chr1-191071689-3	chr1	191071565	191071765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8644.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	37.55	19.62	36.51	30.97	24.55	32.93	24.91	30.03	30.49	35.15	38.69	29.13
Merged-chr5-110970478-4	chr5	110970382	110970582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	B1F|SINE|Alu	-33662.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	26.25	23.9	23.39	34.99	13.5	12.54	11.96	14.44	28.13	28.12	27.13	15.66
Merged-chr11-83534850-3	chr11	83534749	83534949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4331.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	100.55	93.07	90.7	43.84	85.09	121.04	44.51	38.78	128.83	156.15	108.54	59.52
Merged-chr2-11739738-3	chr2	11739625	11739825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34013.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	81.97	89.54	123.22	139.56	117.82	132.01	147.48	149.02	116.44	108.96	155.27	85.84
Merged-chr3-94310181-3	chr3	94310100	94310300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	68.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	161.52	164.25	200.8	210.35	161.6	179.36	132.2	208.88	183.71	150.13	287.92	127.19
Merged-chr19-29101310-3	chr19	29101211	29101411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-64.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	237.84	200.72	211.07	249.36	272.05	273.12	251.79	334.96	276.15	215.4	438.16	155.69
Merged-chr10-99211659-3	chr10	99211571	99211771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51560.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	79.14	54.33	53.62	55.91	98.18	120.73	87.36	86.92	87.13	96.4	105.02	60.77
Merged-chr17-24251446-3	chr17	24251348	24251548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	-39.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	138.91	154.69	180.83	154.85	148.91	207.9	154.79	193.74	195.31	203.85	235.16	126.56
Merged-chr8-71396708-3	chr8	71396598	71396798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-157.0	NM_026636	68251.0	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	170.81	139.09	182.55	121.46	132.96	162.74	105.3	139.63	202.59	217.41	225.11	124.99
Merged-chr16-97962715-3	chr16	97962613	97962813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-91.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	142.94	104.89	107.82	102.56	157.1	168.39	120.25	116.33	210.26	174.73	253.75	103.69
Merged-chr7-24972729-3	chr7	24972622	24972822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010261)	promoter-TSS (NM_010261)	6.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	60.17	56.59	69.6	82.45	95.32	107.56	57.13	87.65	98.34	93.39	102.51	59.21
Merged-chr1-65090585-3	chr1	65090555	65090755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31B|LTR|ERV1	-8365.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	64.2	35.97	51.91	32.58	63.0	74.0	37.2	67.88	57.04	57.24	54.77	21.93
Merged-chr8-46932067-3	chr8	46931952	46932152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	-54835.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	29.48	22.89	25.67	33.38	34.77	57.38	26.57	7.65	26.55	16.07	33.16	12.22
Merged-chr6-134066293-3	chr6	134066192	134066392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	MLT2B2|LTR|ERVL	30592.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	67.03	50.31	42.78	45.45	53.59	79.02	48.5	65.36	70.41	70.8	78.89	35.09
Merged-chr7-100706419-5	chr7	100706338	100706538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-197.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	46.03	43.51	52.48	52.29	55.64	69.93	48.16	50.8	59.2	90.88	71.35	64.53
Merged-chrX-17514252-3	chrX	17514113	17514313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57794.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	36.34	40.24	70.17	62.74	50.32	61.15	40.86	68.8	58.02	51.21	62.81	42.6
Merged-chr2-157007046-3	chr2	157006964	157007164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025853)	promoter-TSS (NM_025853)	11.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	69.86	66.15	43.93	29.36	77.32	94.7	35.54	48.39	95.59	93.39	64.32	40.41
Merged-chr15-40060475-1	chr15	40060375	40060575	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155348, intron 2 of 2)	intron (NR_155348, intron 2 of 2)	15287.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.4	3.52	13.69	7.24	2.86	2.51	8.3	10.49	4.52	5.52	13.06	4.7
Merged-chr6-116131924-3	chr6	116131831	116132031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MIR|SINE|MIR	61443.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	54.51	54.33	43.35	59.93	75.28	85.92	58.46	60.59	74.94	79.83	57.79	51.69
Merged-chr8-70752524-3	chr8	70752411	70752611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2168.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	43.61	22.89	26.24	40.22	60.96	52.05	58.13	78.42	71.2	53.22	49.75	40.1
Merged-chr4-123718266-3	chr4	123718192	123718392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002445).2	promoter-TSS (NR_002445).2	-106.0	NM_001030274	595136.0	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	73.09	52.57	67.88	54.7	84.68	97.83	32.55	62.55	96.57	81.34	73.36	38.22
Merged-chr6-125131854-3	chr6	125131765	125131965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138747)	promoter-TSS (NM_138747)	-18.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	127.6	133.06	76.44	79.64	107.19	127.94	70.42	88.71	132.96	159.67	119.09	82.7
Merged-chr1-151344408-3	chr1	151344283	151344483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-103.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	104.99	92.81	108.39	76.02	100.64	106.61	59.46	99.11	138.86	128.04	129.64	88.97
Merged-chr1-175625652-3	chr1	175625611	175625811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-76.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	179.69	147.4	223.62	180.59	187.78	236.12	161.44	250.01	209.87	194.31	275.86	124.37
Merged-chr7-73535028-1	chr7	73534928	73535128	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6718.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	3.23	6.29	6.85	5.23	3.68	1.88	5.65	9.25	4.52	2.01	3.01	5.95
Merged-chr14-57366945-3	chr14	57366858	57367058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	31525.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	28.67	30.94	46.21	43.44	39.68	34.81	31.22	61.54	45.83	25.11	46.73	45.11
Merged-chr16-64851858-3	chr16	64851734	64851934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	-111.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	347.26	292.53	329.15	355.95	381.28	412.66	353.43	481.99	483.26	428.3	611.52	281.31
Merged-chr13-34078055-3	chr13	34077956	34078156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-48.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	129.62	103.63	90.13	99.34	115.37	155.85	110.95	122.19	165.61	138.58	184.91	88.03
Merged-chr2-113304787-1	chr2	113304687	113304887	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19055.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0.4	2.52	7.42	2.41	3.27	2.51	7.31	9.45	4.52	0.5	3.01	3.76
Merged-chrX-56598103-3	chrX	56598002	56598202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146234)	promoter-TSS (NM_146234)	-183.0	NM_146234	236792.0	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	108.22	112.68	127.78	122.67	122.73	157.1	111.28	140.72	157.55	197.83	195.47	117.47
Merged-chr8-70673263-3	chr8	70673167	70673367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015816)	promoter-TSS (NM_015816)	36.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	177.27	198.71	210.5	168.52	193.1	255.25	87.69	147.45	222.45	222.93	223.1	118.73
Merged-chr17-31295281-3	chr17	31295175	31295375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-208.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	30.69	31.44	27.95	25.34	29.46	35.12	21.26	22.37	35.99	26.61	33.67	30.07
Merged-chr9-44515397-4	chr9	44515277	44515477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	11044.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	22.21	18.61	19.97	24.53	34.77	24.15	22.26	21.93	32.45	37.16	36.68	30.39
Merged-chr12-44210229-3	chr12	44210111	44210311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013760)	promoter-TSS (NM_013760)	-102.0	NR_049203	100885842.0		NR_049203	ENSMUSG00000093618	Mir5627	Gm23684|mir-5627|mmu-mir-5627	microRNA 5627	ncRNA	327.48	340.82	293.79	303.26	429.97	492.94	285.0	359.3	490.34	512.65	517.05	275.99
Merged-chr8-116978903-3	chr8	116978810	116979010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357254)	promoter-TSS (NM_001357254)	49.0	NM_027103	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	139.31	179.59	164.29	217.59	142.78	164.31	237.5	140.89	156.76	189.29	197.98	153.5
Merged-chr3-79629493-3	chr3	79629382	79629582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025794)	promoter-TSS (NM_025794)	403.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	14.54	18.61	13.12	18.1	15.55	18.5	13.29	12.56	20.26	12.55	28.14	16.6
Merged-chr11-51805393-3	chr11	51805294	51805494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42|LTR|ERVK	41731.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	13.73	14.59	23.39	18.9	33.96	37.0	13.95	30.2	31.08	24.6	43.72	15.35
Merged-chr6-17409875-3	chr6	17409787	17409987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR81A|LTR|Gypsy	-54070.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	96.51	72.44	104.39	78.83	122.32	162.43	93.67	119.69	183.51	182.77	180.39	87.71
Merged-chr5-147431171-3	chr5	147431097	147431297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	CpG	1041.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	39.98	32.95	31.38	22.52	36.0	35.75	25.58	25.82	48.78	61.76	40.2	30.07
Merged-chr13-44419259-3	chr13	44419159	44419359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20468.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	35.13	15.85	26.81	32.58	35.59	42.96	16.28	35.38	25.96	31.63	41.2	15.35
Merged-chr8-18595586-3	chr8	18595499	18595699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173189, exon 1 of 14)	exon (NM_173189, exon 1 of 14)	468.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	48.05	28.17	39.93	58.72	58.5	40.45	50.49	50.24	38.55	43.68	55.27	27.57
Merged-chr8-69008049-3	chr8	69007951	69008151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80685.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	73.89	54.08	71.88	71.59	37.23	63.03	46.84	65.02	64.91	49.71	82.91	51.38
Merged-chr3-94582707-3	chr3	94582608	94582808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	8.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	46.84	42.01	38.79	62.74	69.55	74.94	53.15	58.18	62.94	47.2	75.37	36.97
Merged-chr4-97757430-3	chr4	97757337	97757537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-20189.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	45.63	16.1	16.54	16.89	31.5	16.31	27.57	21.48	33.04	32.64	32.66	20.05
Merged-chr19-46305658-3	chr19	46305571	46305771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177370)	promoter-TSS (NM_001177370)	-24.0	NM_019408	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	107.41	140.6	172.85	103.77	140.32	178.74	75.4	92.64	178.79	183.27	146.72	99.62
Merged-chr4-124802513-3	chr4	124802424	124802624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-25.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	86.82	62.38	76.44	81.65	94.09	83.41	42.52	60.87	117.03	97.91	148.73	65.79
Merged-chr15-64312805-3	chr15	64312714	64312914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-141.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	152.23	118.47	139.19	111.81	117.0	154.59	83.04	110.22	179.97	190.3	186.42	98.05
Merged-chr2-106974470-3	chr2	106974370	106974570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-73.0	NM_001025102	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	73.09	84.76	92.41	82.85	96.96	108.81	86.7	139.82	87.33	93.89	153.76	61.71
Merged-chr13-41019155-3	chr13	41019062	41019262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2912.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	48.05	27.92	53.05	69.58	58.5	51.43	46.5	64.46	55.86	48.2	83.91	44.48
Merged-chr6-7844623-3	chr6	7844494	7844694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-630.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	197.05	214.05	198.52	189.84	230.73	291.62	205.28	234.39	297.0	287.2	438.16	149.43
Merged-chr19-43674989-3	chr19	43674869	43675069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	-88.0	NM_001356944	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	236.62	214.3	244.73	246.55	233.6	243.02	179.04	238.32	261.99	279.67	318.07	160.39
Merged-chr17-57248498-3	chr17	57248402	57248602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-813.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	29.88	30.43	41.07	18.1	47.46	65.22	13.95	33.53	37.76	44.19	40.7	25.06
Merged-chr11-29694253-3	chr11	29694125	29694325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	451.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	37.15	33.45	40.5	25.74	35.59	35.75	23.58	30.87	37.57	28.12	43.21	15.04
Merged-chr9-35278059-3	chr9	35277956	35278156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3049.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	30.28	35.97	37.65	32.58	21.27	24.77	28.9	33.76	24.59	22.59	28.14	21.93
Merged-chr18-46525998-3	chr18	46525920	46526120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173423)	promoter-TSS (NM_173423)	-49.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	211.19	203.49	231.03	192.25	231.55	264.34	206.28	209.36	322.18	339.93	326.61	178.88
Merged-chr19-21032041-3	chr19	21031903	21032103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72707.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	39.98	49.55	79.86	78.83	71.59	77.14	88.69	80.58	96.97	98.91	115.07	63.28
Merged-chr5-144126197-3	chr5	144126110	144126310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081109, intron 1 of 13)	intron (NM_001081109, intron 1 of 13)	25774.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	55.32	46.53	54.76	55.1	45.0	44.84	33.55	34.65	43.27	60.75	32.66	24.43
Merged-chr19-6992661-3	chr19	6992562	6992762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357001)	promoter-TSS (NM_001357001)	-80.0	NM_001357000	57431.0	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	107.81	95.83	132.35	104.17	134.19	188.14	77.4	116.83	121.95	122.01	128.64	79.88
Merged-chr5-123573033-3	chr5	123572903	123573103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029929)	promoter-TSS (NM_029929)	12.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	48.05	43.51	55.9	49.87	54.41	58.64	20.26	33.11	75.53	71.8	59.29	38.22
Merged-chr10-20312954-3	chr10	20312874	20313074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025392, intron 1 of 12)	CpG	505.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	82.78	79.99	74.16	106.99	90.82	100.03	72.41	90.87	111.92	113.48	163.81	74.24
Merged-chr10-111422816-3	chr10	111422733	111422933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50394.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	18.57	21.13	28.52	29.36	34.36	33.24	23.92	42.5	27.54	20.59	56.28	17.54
Merged-chr11-69901690-3	chr11	69901607	69901807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-109.0	NM_001291118	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	54.51	80.49	54.19	45.45	48.27	67.42	34.55	30.2	74.35	82.35	67.33	48.87
Merged-chr16-29735820-3	chr16	29735713	29735913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	156479.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	16.96	13.83	16.54	21.32	17.18	13.17	14.95	12.67	17.31	21.09	17.08	13.16
Merged-chr1-166345787-3	chr1	166345668	166345868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33399.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	31.9	57.6	73.59	83.66	78.14	65.22	80.72	104.78	77.1	64.27	94.97	54.2
Merged-chr17-86495066-3	chr17	86494957	86495157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 9 of 14)	intron (NM_011104, intron 9 of 14)	-207879.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	39.98	40.75	49.63	66.36	57.27	60.83	50.16	58.88	23.6	37.16	48.74	18.48
Merged-chr18-60763064-3	chr18	60763013	60763213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11483.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	42.8	34.71	54.19	67.17	67.5	64.28	68.1	69.95	71.59	54.73	142.71	61.71
Merged-chr10-17733244-3	chr10	17733149	17733349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10021.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	12.92	17.36	5.7	10.86	21.27	20.38	15.28	21.53	26.55	26.61	32.66	19.42
Merged-chr1-94035242-4	chr1	94035110	94035310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14717.0	NM_001310769	241159.0	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	6.46	7.04	12.55	17.7	11.45	12.86	29.9	17.1	8.26	16.07	11.05	17.23
Merged-chr8-77451643-3	chr8	77451539	77451739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-65417.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	32.71	38.99	50.77	38.61	51.14	39.51	39.53	50.3	72.58	58.24	68.84	22.56
Merged-chr13-42328736-3	chr13	42328641	42328841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27265.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	58.95	69.17	96.98	64.75	100.64	80.27	107.62	88.21	86.54	138.58	150.74	104.94
Merged-chr2-80025834-3	chr2	80025744	80025944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13058.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	56.13	57.85	59.33	66.77	84.28	104.11	73.08	82.26	109.36	108.45	92.96	49.5
Merged-chr2-173021935-3	chr2	173021834	173022034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019547)	promoter-TSS (NM_019547)	32.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	65.82	66.4	44.5	71.59	76.91	90.0	51.15	65.94	91.85	82.85	83.91	38.53
Merged-chr16-31201317-3	chr16	31201224	31201424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-86.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	226.53	226.12	192.24	232.07	242.6	287.86	210.26	210.98	272.02	267.12	314.05	152.56
Merged-chr13-108041606-3	chr13	108041498	108041698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2876.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	83.59	70.68	86.71	69.18	85.91	96.58	45.84	69.53	128.04	126.03	125.12	45.42
Merged-chr10-95151291-3	chr10	95151181	95151381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-5456.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	54.92	50.81	61.04	56.31	66.27	70.24	50.82	72.06	67.66	56.24	118.08	51.38
Merged-chrUn_JH584304-61247-1	chrUn_JH584304	61147	61347	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1558.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	48.78	55.73	56.28	52.32
Merged-chr2-60113878-3	chr2	60113772	60113972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	L1MA5A|LINE|L1	11868.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	41.19	55.34	59.33	38.61	55.23	83.41	27.24	51.67	65.1	55.73	69.34	41.04
Merged-chr2-145888573-3	chr2	145888475	145888675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028724)	TTS (NM_028724)	-14666.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	119.12	110.42	138.05	131.12	141.14	128.56	100.98	143.92	141.22	144.1	158.28	101.81
Merged-chr11-3186780-3	chr11	3186697	3186897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6666.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	25.44	30.69	16.54	20.51	72.82	70.24	40.52	54.5	115.46	115.99	70.85	48.87
Merged-chr16-35869281-3	chr16	35869179	35869379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	2103.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	75.11	121.74	87.85	59.53	89.18	127.62	43.18	48.22	129.03	152.14	101.0	59.21
Merged-chr18-63691956-1	chr18	63691856	63692056	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016792, intron 1 of 7)	CpG	403.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	16.96	17.61	13.12	12.47	16.77	21.95	22.26	16.15	26.36	20.59	32.16	23.18
Merged-chr2-158174074-3	chr2	158173963	158174163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17945.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	18.57	16.35	32.52	14.88	13.09	15.68	16.61	40.68	26.95	21.09	28.14	23.18
Merged-chr7-43250881-3	chr7	43250794	43250994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	36855.0	NM_001177525	100170401.0		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	23.02	16.35	29.09	25.34	22.09	34.81	46.84	17.5	36.39	32.13	49.75	24.12
Merged-chr11-116030374-4	chr11	116030285	116030485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	69.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	77.12	84.76	50.77	66.36	57.68	111.63	69.09	34.09	97.75	115.48	71.35	76.44
Merged-chr2-26021721-3	chr2	26021622	26021822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	38.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	88.84	68.92	63.89	100.55	65.05	82.78	39.2	60.39	72.18	61.76	91.45	39.78
Merged-chr17-44103913-3	chr17	44103809	44104009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	1899.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	42.4	32.7	51.91	41.83	46.64	45.15	37.2	63.06	74.54	68.79	64.82	48.24
Merged-chr14-118089447-3	chr14	118089379	118089579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37233.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	25.04	27.42	33.09	38.21	11.86	35.12	44.51	22.4	32.85	38.66	36.68	38.85
Merged-chr6-72162372-3	chr6	72162287	72162487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39190.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	66.63	59.61	71.31	82.45	96.14	69.93	66.1	100.04	69.63	72.3	109.04	52.32
Merged-chr13-41331823-3	chr13	41331735	41331935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	27166.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	15.75	21.38	16.54	32.98	38.86	34.81	24.58	48.08	29.7	30.13	40.2	25.37
Merged-chr5-92505665-3	chr5	92505552	92505752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	5.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	159.1	175.82	215.63	209.55	200.87	244.27	191.33	184.51	291.1	297.75	369.83	180.44
Merged-chr3-109464817-3	chr3	109464714	109464914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-109193.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	38.76	17.61	65.6	67.97	40.5	15.37	25.58	44.69	21.24	33.14	55.78	32.89
Merged-chr15-62037936-3	chr15	62037824	62038024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003368)	promoter-TSS (NR_003368)	-62.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	43.61	34.21	31.38	34.19	35.59	34.49	31.89	39.36	58.81	50.71	41.71	41.04
Merged-chr15-57929564-3	chr15	57929435	57929635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	17336.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	40.78	26.91	59.33	49.87	49.91	40.45	49.16	67.23	74.94	58.24	126.63	50.44
Merged-chr13-49298608-3	chr13	49298463	49298663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	10645.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	46.44	36.47	67.88	59.53	57.27	28.85	38.2	61.18	39.93	36.15	53.77	41.98
Merged-chr10-126905812-3	chr10	126905700	126905900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4429.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	80.36	72.19	90.7	66.77	90.82	113.51	83.71	85.93	100.9	101.43	95.47	63.28
Merged-chr12-100445457-3	chr12	100445352	100445552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75370.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	23.42	15.59	25.1	30.57	30.68	31.98	26.24	40.91	23.6	19.58	48.74	16.92
Merged-chr11-103265399-3	chr11	103265300	103265500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2001.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	38.76	23.9	27.95	25.74	20.05	13.48	18.6	20.75	27.73	17.57	30.65	14.72
Merged-chr13-13393573-3	chr13	13393458	13393658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	66.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	33.11	19.12	26.81	28.56	32.32	43.59	50.82	30.93	41.11	37.16	74.87	35.71
Merged-chr6-70844333-3	chr6	70844217	70844417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010121)	promoter-TSS (NM_010121)	-198.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	314.56	298.06	343.41	359.16	312.56	341.17	314.9	357.98	325.32	393.65	419.57	251.24
Merged-chr9-120582789-3	chr9	120582691	120582891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5460.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	25.04	21.38	30.8	18.5	32.32	36.69	12.95	27.7	44.25	59.75	39.19	28.51
Merged-chr5-36989075-3	chr5	36988974	36989174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-92.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	215.22	227.88	266.97	273.09	279.42	300.72	211.59	314.24	255.89	292.73	368.32	201.74
Merged-chr18-23873369-2	chr18	23873279	23873479	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	69409.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.44	2.52	1.14	1.61	48.27	34.18	63.44	60.42	45.43	44.69	40.7	34.46
Merged-chr15-101266026-3	chr15	101265928	101266128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-818.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	39.57	29.68	38.22	30.57	50.32	70.87	40.86	38.78	65.69	62.76	56.78	39.78
Merged-chr4-123282701-3	chr4	123282624	123282824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356377)	promoter-TSS (NM_001356377)	-187.0	NM_148917	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	38.36	34.96	23.39	21.72	49.91	36.06	16.28	19.4	41.11	41.67	34.67	20.99
Merged-chr10-21067340-3	chr10	21067235	21067435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177776, intron 4 of 6)	intron (NM_001177776, intron 4 of 6)	26515.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	24.23	21.88	25.1	27.75	15.14	13.8	11.29	20.58	27.54	21.09	22.61	18.17
Merged-chr17-15021697-2	chr17	15021581	15021781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123372, intron 11 of 11)	intron (NM_001123372, intron 11 of 11)	-11497.0	NM_198104	21647.0	Mm.440445	NM_011560	ENSMUSG00000079707	Tcte3	D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4	t-complex-associated testis expressed 3	protein-coding	16.96	19.37	30.8	34.59	0.0	0.0	0.0	0.0	22.23	19.58	24.12	15.04
Merged-chr2-158166761-3	chr2	158166653	158166853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20361.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	75.51	67.66	128.35	102.96	95.73	102.22	97.66	106.85	91.26	88.37	120.6	60.46
Merged-chr9-120110781-3	chr9	120110688	120110888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144793, intron 1 of 6)	CpG	389.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	46.44	46.53	51.34	61.54	63.82	71.49	25.24	44.66	84.77	82.85	107.03	46.36
Merged-chr14-13551334-2	chr14	13551225	13551425	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	97367.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	1.76	1.14	0.0	32.73	51.74	31.22	35.58	47.8	35.65	50.75	25.37
Merged-chr2-75788713-3	chr2	75788588	75788788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43489.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	29.88	28.67	28.52	8.45	19.64	36.37	17.27	10.43	43.27	29.12	35.17	13.78
Merged-chr14-51237700-3	chr14	51237597	51237797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	18415.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	25.84	37.98	49.63	60.33	46.23	44.53	29.9	27.84	37.96	32.64	33.16	30.39
Merged-chr2-148681050-3	chr2	148680946	148681146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-74.0	NM_001355689	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	233.8	243.48	235.6	247.76	243.83	284.1	210.6	254.16	275.36	301.26	347.22	175.74
Merged-chr9-62363807-2	chr9	62363706	62363906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CpG	22463.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	74.7	69.67	106.1	61.13	20.05	20.7	11.63	23.3	2.16	4.02	2.01	2.51
Merged-chr3-31094192-1	chr3	31094092	31094292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-866.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	11.31	18.36	10.27	19.71	16.36	21.01	30.23	17.44	23.21	29.12	44.22	16.92
Merged-chr1-165616823-3	chr1	165616737	165616937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17704.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	13.73	3.52	24.53	22.12	18.41	4.39	36.21	42.48	22.42	10.04	53.26	16.29
Merged-chr16-33076354-1	chr16	33076254	33076454	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	MTD|LTR|ERVL-MaLR	13833.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	1.21	5.03	7.42	6.03	9.41	3.14	0.66	8.69	7.47	1.51	2.51	3.45
Merged-chr11-99189342-3	chr11	99189254	99189454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34277.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	62.59	80.74	71.88	68.37	60.55	97.52	43.85	34.23	101.49	86.86	92.96	50.12
Merged-chr5-139398007-3	chr5	139397916	139398116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	8112.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	54.11	48.54	67.88	64.75	69.96	52.05	88.36	78.25	62.15	78.83	72.36	62.97
Merged-chr10-80603041-5	chr10	80602932	80603132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019575, intron 1 of 6)	CpG	150.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	47.65	60.37	25.1	41.43	51.14	74.32	60.46	33.39	48.78	53.22	61.81	40.41
Merged-chr8-119779527-3	chr8	119779432	119779632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1116.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	28.27	21.13	18.25	29.76	20.05	25.4	13.95	24.03	31.47	35.65	28.14	19.74
Merged-chr11-86201264-3	chr11	86201157	86201357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130958)	promoter-TSS (NR_130958)	-64.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	83.59	79.99	86.71	68.37	118.23	116.34	49.16	71.33	124.31	126.03	129.64	61.4
Merged-chr11-75047306-3	chr11	75047214	75047414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18677.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	24.23	12.58	25.1	34.19	23.73	29.48	37.2	30.79	34.03	20.59	51.76	25.69
Merged-chr11-22872018-3	chr11	22871923	22872123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	32.3	37.23	74.73	51.48	28.64	51.74	38.53	57.06	47.4	40.67	27.64	18.8
Merged-chr6-87184056-3	chr6	87183952	87184152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	79306.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	48.05	51.06	29.66	42.23	42.55	40.45	15.61	19.01	41.7	41.17	40.2	24.12
Merged-chr11-117830055-3	chr11	117829949	117830149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4035.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	76.32	71.18	85.0	63.15	63.82	109.12	79.06	67.01	87.33	77.83	94.47	27.25
Merged-chr10-118092320-1	chr10	118092220	118092420	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49467.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.81	0.5	0.0	0.4	2.86	4.39	0.66	1.26	17.11	18.58	26.63	14.72
Merged-chr13-17695530-2	chr13	17695430	17695630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	117.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	25.44	29.93	25.1	35.8	33.14	32.61	37.2	25.46	36.78	32.13	43.72	24.43
Merged-chr17-73935456-3	chr17	73935346	73935546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 5 of 35)	URR1A|DNA|hAT-Charlie	14750.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	81.16	55.08	114.66	98.54	58.5	55.5	97.33	110.44	65.69	60.25	67.33	45.42
Merged-chr10-82860755-3	chr10	82860629	82860829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	388.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	151.02	162.24	149.46	124.68	133.37	213.86	171.73	163.57	212.62	219.42	285.91	126.25
Merged-chr2-155819253-3	chr2	155819167	155819367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-64.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	117.5	105.64	132.92	132.73	149.73	164.31	100.32	113.72	158.73	113.48	172.35	96.17
Merged-chr1-74601405-3	chr1	74601322	74601522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305230)	promoter-TSS (NM_001305230)	-25.0	NM_001305230	57751.0	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	56.13	28.42	21.11	48.67	56.05	39.51	34.88	49.88	60.58	55.73	63.82	38.85
Merged-chr1-150165050-3	chr1	150164949	150165149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-101.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	63.8	68.16	120.94	79.23	88.37	150.2	127.55	102.62	165.02	99.92	177.38	63.91
Merged-chr2-116989502-3	chr2	116989407	116989607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89355.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	48.46	40.24	59.9	53.89	87.96	75.88	51.49	70.04	78.28	87.87	98.49	50.75
Merged-chr1-154260626-1	chr1	154260526	154260726	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-3720.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	3.23	1.51	3.42	2.82	1.64	9.09	3.65	10.96	1.97	1.51	9.55	5.33
Merged-chr14-46912696-3	chr14	46912590	46912790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	29725.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	43.61	30.94	43.35	25.74	57.68	56.44	31.56	46.88	40.91	61.26	42.71	33.21
Merged-chr11-97830682-3	chr11	97830560	97830760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10120.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	11.71	12.07	15.97	17.7	20.05	22.89	25.91	21.14	27.14	17.57	18.09	14.72
Merged-chr14-55672194-3	chr14	55672072	55672272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-63.0	NM_177992	105446.0	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	71.07	62.88	75.3	79.23	90.0	113.2	38.2	79.32	87.92	97.41	113.06	73.3
Merged-chr10-41477930-3	chr10	41477813	41478013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-97.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	40.38	27.67	22.25	21.72	46.23	49.23	29.56	42.25	47.99	48.2	43.21	27.88
Merged-chr17-27938551-3	chr17	27938456	27938656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	29250.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	17.77	22.64	45.64	45.45	23.32	27.28	24.58	26.13	25.57	22.59	34.67	24.43
Merged-chr2-26640450-4	chr2	26640365	26640565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024068)	promoter-TSS (NR_024068)	-221.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	16.56	21.38	13.12	13.67	22.5	32.61	23.92	16.57	32.26	36.15	35.17	24.43
Merged-chr5-52431662-3	chr5	52431548	52431748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-9511.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	64.61	69.17	82.15	61.13	48.27	45.47	47.17	68.86	55.47	43.18	77.38	40.1
Merged-chr9-58232616-3	chr9	58232495	58232695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	11445.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	84.39	69.92	82.15	61.94	75.68	85.29	58.79	68.5	92.25	55.73	60.8	52.32
Merged-chr14-21831169-4	chr14	21831071	21831271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011695)	promoter-TSS (NM_011695)	-390.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	70.66	87.53	91.27	131.92	73.23	126.37	98.65	97.18	88.12	99.42	150.74	76.12
Merged-chr4-108369424-3	chr4	108369337	108369537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099303, intron 2 of 2)	intron (NM_001099303, intron 2 of 2)	14218.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	43.61	47.04	62.18	58.32	60.55	60.21	51.49	90.95	71.59	60.25	101.0	53.88
Merged-chr10-125966177-3	chr10	125966076	125966276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177152)	promoter-TSS (NM_177152)	-43.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	25.04	21.63	37.08	23.33	49.09	49.54	68.1	47.5	46.42	49.71	68.34	37.28
Merged-chr14-19713240-3	chr14	19713131	19713331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-38026.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	50.47	52.82	54.76	49.07	74.05	56.13	46.5	56.13	60.19	58.24	81.4	45.11
Merged-chr13-112927528-3	chr13	112927452	112927652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	-172.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	266.1	268.63	273.25	296.82	277.37	303.85	219.56	315.37	241.93	268.12	321.59	177.31
Merged-chr11-75172528-5	chr11	75172497	75172697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029794)	promoter-TSS (NR_029794)	-791.0	NR_029794	387208.0		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	24.23	15.59	33.66	15.28	17.59	28.22	31.89	26.33	53.5	44.69	58.79	32.89
Merged-chr16-10992268-3	chr16	10992152	10992352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	869.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	126.39	116.96	119.23	113.02	128.46	216.68	123.9	128.97	152.43	178.25	220.09	102.75
Merged-chr17-32528901-3	chr17	32528780	32528980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101445)	TTS (NM_001101445)	-7677.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	33.52	19.87	15.97	20.91	21.68	24.46	24.91	26.24	12.78	20.08	20.6	20.99
Merged-chr3-152396527-3	chr3	152396414	152396614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-170.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	102.16	140.6	122.08	125.08	132.96	149.89	183.36	129.39	111.33	170.72	107.53	103.06
Merged-chr17-29395543-3	chr17	29395447	29395647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34633.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	169.19	191.92	216.2	153.24	142.37	222.32	133.2	138.56	159.32	184.27	189.44	86.46
Merged-chr18-40219423-3	chr18	40219332	40219532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-33.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	240.66	232.41	292.64	299.64	284.33	342.11	260.75	319.96	334.57	291.72	500.47	200.18
Merged-chr5-67836446-3	chr5	67836325	67836525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	11006.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	18.17	14.09	15.4	14.88	26.18	26.03	17.27	35.92	39.14	26.11	21.61	23.18
Merged-chr14-104522635-3	chr14	104522528	104522728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	38.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	44.01	31.69	47.92	30.97	31.09	39.51	42.85	43.63	46.81	47.2	65.32	23.18
Merged-chr19-25074993-3	chr19	25074889	25075089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	75460.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	31.09	21.38	32.52	36.2	17.59	20.07	17.27	28.12	17.51	17.07	34.67	24.75
Merged-chr14-32159912-3	chr14	32159795	32159995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	8.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	70.26	65.15	67.88	76.02	53.59	46.1	53.48	47.24	72.77	82.85	87.93	59.52
Merged-chr18-34776921-3	chr18	34776831	34777031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081256)	promoter-TSS (NM_001081256)	-77.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	90.45	96.08	77.01	82.05	103.09	133.27	50.16	79.91	129.03	137.07	151.75	62.97
Merged-chr11-62542807-3	chr11	62542716	62542916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-3555.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	27.86	16.35	20.54	20.91	29.46	43.59	12.95	24.28	27.93	26.11	26.13	31.01
Merged-chr6-129396981-3	chr6	129396880	129397080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-317.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	52.49	27.67	50.2	57.92	54.82	63.97	64.44	61.4	51.93	50.71	44.22	39.78
Merged-chr18-46741699-5	chr18	46741649	46741849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	-127.0	NM_001303015	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	31.09	35.97	31.38	55.91	49.91	66.48	52.15	42.73	51.14	70.8	61.81	36.65
Merged-chr2-131186888-3	chr2	131186792	131186992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023117)	promoter-TSS (NM_023117)	-56.0	NM_023117	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	54.92	28.42	39.36	30.57	47.05	58.32	29.9	42.84	71.2	68.79	78.39	27.88
Merged-chr10-88731004-3	chr10	88730927	88731127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	74.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	57.74	48.29	39.36	28.56	59.73	53.62	35.54	58.23	50.94	47.2	71.86	57.33
Merged-chrX-140614231-1	chrX	140614131	140614331	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13709.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	1.62	0.5	7.99	2.41	4.91	0.94	7.64	9.31	2.95	1.51	9.04	3.76
Merged-chr19-26748326-3	chr19	26748221	26748421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026003)	promoter-TSS (NM_026003)	-82.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	80.36	71.43	55.9	73.2	126.0	106.61	68.43	131.64	87.72	101.43	103.01	47.62
Merged-chr17-45625522-3	chr17	45625433	45625633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23431.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	36.75	39.74	34.8	26.95	33.55	76.83	39.2	24.98	66.28	63.27	61.81	30.39
Merged-chr13-42052834-3	chr13	42052710	42052910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 1 of 8)	(TCC)n|Simple_repeat|Simple_repeat	789.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	52.9	77.72	37.08	34.59	65.87	94.7	47.17	27.87	67.86	56.24	61.81	25.06
Merged-chr7-130546912-3	chr7	130546805	130547005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162855, intron 1 of 10)	CpG	476.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	30.28	21.88	23.39	18.9	22.09	14.74	18.93	21.56	23.21	18.08	35.17	16.92
Merged-chr2-60901693-3	chr2	60901620	60901820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-20282.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	59.36	70.93	79.29	70.38	71.18	84.35	102.97	63.08	93.23	91.38	96.98	52.94
Merged-chr9-78175502-3	chr9	78175410	78175610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-404.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	59.76	63.13	67.88	66.36	63.41	67.1	54.14	28.99	42.68	36.65	45.22	25.37
Merged-chr9-45906475-3	chr9	45906377	45906577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281934)	promoter-TSS (NM_001281934)	-92.0	NM_001281934	18554.0	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	47.24	35.21	43.35	41.43	34.36	50.17	28.57	28.91	63.33	56.24	68.34	23.49
Merged-chr13-56703016-3	chr13	56702948	56703148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-4.0	NM_001164041	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	54.51	58.61	72.45	53.89	50.32	79.02	32.88	40.46	66.09	57.74	89.44	42.92
Merged-chr5-21386577-3	chr5	21386496	21386696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	L1MB3|LINE|L1	13923.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	50.47	45.53	91.27	76.02	59.32	43.9	44.84	94.63	78.68	54.23	90.45	52.32
Merged-chr17-5602154-3	chr17	5602039	5602239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	109539.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	31.9	13.58	43.35	50.27	125.59	39.51	46.84	120.56	54.29	26.61	62.31	28.51
Merged-chr12-8922031-3	chr12	8922028	8922228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008640, exon 1 of 7)	exon (NM_008640, exon 1 of 7)	821.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	101.35	115.2	116.94	157.66	105.55	161.8	169.41	122.16	153.61	202.85	214.56	131.57
Merged-chr17-6079807-3	chr17	6079689	6079889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181392)	promoter-TSS (NM_181392)	-39.0	NM_181392	66467.0	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	90.45	73.95	64.46	81.65	98.18	77.45	69.42	76.68	129.81	128.04	132.66	108.08
Merged-chr8-41017739-3	chr8	41017641	41017841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015457, exon 1 of 3)	non-coding (NR_015457, exon 1 of 3)	273.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	64.61	49.8	46.21	59.93	51.55	63.34	49.16	75.84	124.11	122.51	153.76	89.91
Merged-chr3-88553659-3	chr3	88553554	88553754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-62.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	75.11	84.26	100.4	64.75	85.5	120.1	56.8	84.51	109.95	116.49	160.29	82.39
Merged-chr19-38022890-3	chr19	38022790	38022990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20687.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	86.01	55.34	86.71	74.0	74.05	87.17	101.98	75.98	51.34	71.8	82.91	36.34
Merged-chr18-23415294-1	chr18	23415194	23415394	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010087)	promoter-TSS (NM_010087)	-115.0	NM_010087	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	2.42	1.76	0.0	7.24	7.77	20.7	18.27	18.5	1.97	3.51	5.53	3.13
Merged-chr11-43385372-3	chr11	43385257	43385457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10896.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	137.29	143.37	83.86	113.02	118.23	195.04	142.5	95.83	125.68	161.68	129.14	72.99
Merged-chr3-89091002-3	chr3	89090900	89091100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	-969.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	10.9	16.35	19.97	14.48	15.14	13.8	20.93	19.15	21.24	22.09	20.6	11.28
Merged-chr11-94161447-3	chr11	94161349	94161549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50005.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	21.4	24.15	29.09	31.37	49.5	63.34	33.55	48.28	38.16	40.67	51.25	26.0
Merged-chr16-11322899-3	chr16	11322805	11323005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	1.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	63.4	61.88	50.77	47.86	59.73	85.61	45.18	80.55	70.02	88.37	111.55	42.92
Merged-chr10-87718786-3	chr10	87718673	87718873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139492.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	18.98	19.12	67.31	36.2	28.23	28.85	27.9	35.83	38.35	25.11	55.78	17.54
Merged-chr14-46884207-3	chr14	46884112	46884312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 1 of 12)	CpG	1247.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	23.02	17.36	30.8	16.09	20.46	23.2	21.26	28.23	36.39	34.65	38.69	21.3
Merged-chr6-30616831-3	chr6	30616752	30616952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	5842.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	40.38	44.02	32.52	34.99	43.77	52.05	40.52	42.28	57.24	24.6	45.73	25.37
Merged-chr15-96285572-3	chr15	96285471	96285671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1951.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	108.62	86.53	80.43	66.77	90.41	116.34	49.83	74.75	120.77	115.99	159.29	88.03
Merged-chr5-108312744-3	chr5	108312611	108312811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081234)	promoter-TSS (NM_001081234)	-214.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	60.57	77.22	64.46	59.12	58.5	65.22	65.11	66.65	48.58	48.2	64.32	45.11
Merged-chr10-94355575-3	chr10	94355475	94355675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43626.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	23.42	17.61	14.26	15.69	25.36	34.49	16.28	27.93	29.9	29.62	55.78	26.94
Merged-chr14-25485761-3	chr14	25485664	25485864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	26579.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	16.56	12.32	21.11	16.89	17.18	24.46	14.95	23.97	27.93	26.11	28.64	15.98
Merged-chr11-59538574-3	chr11	59538473	59538673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2996.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	94.49	61.37	88.42	93.31	130.91	133.27	91.01	111.06	113.49	116.49	145.22	69.55
Merged-chr15-33212026-3	chr15	33211914	33212114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	MIR|SINE|MIR	128885.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	18.57	23.64	31.38	22.93	25.77	27.28	16.61	26.3	42.68	33.64	48.74	27.57
Merged-chr10-117840727-3	chr10	117840624	117840824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5250.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	22.61	13.58	18.83	18.5	18.82	32.61	26.57	30.79	25.57	29.62	32.66	13.16
Merged-chrUn_JH584304-63112-1	chrUn_JH584304	63012	63212	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAG|tRNA|tRNA	-3423.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	22.03	21.09	16.58	25.06
Merged-chr15-73423243-3	chr15	73423138	73423338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-47.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	77.93	61.12	66.74	84.06	67.5	108.81	58.46	71.02	113.29	122.01	143.71	59.83
Merged-chr7-44467972-3	chr7	44467874	44468074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205070)	promoter-TSS (NM_001205070)	-6.0	NM_001360604	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	111.85	114.45	128.35	110.2	121.09	141.11	73.41	121.71	147.91	125.02	224.61	82.7
Merged-chr8-105937102-3	chr8	105937020	105937220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013640, intron 4 of 7)	intron (NM_013640, intron 4 of 7)	1272.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	24.63	23.14	23.96	17.7	36.0	28.22	20.93	19.07	36.19	45.19	52.26	23.81
Merged-chr15-27783302-3	chr15	27783188	27783388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-101746.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	65.82	49.8	74.16	59.93	92.05	75.57	37.87	79.32	70.22	54.73	59.8	56.39
Merged-chr12-108641190-3	chr12	108641096	108641296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5443.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	48.46	28.93	28.52	44.64	44.18	43.9	38.86	53.47	52.91	44.19	91.95	43.86
Merged-chr13-43398377-3	chr13	43398295	43398495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023554)	promoter-TSS (NM_023554)	19.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	49.67	48.54	51.34	43.84	66.68	75.88	48.16	46.85	91.26	95.9	86.93	52.0
Merged-chr4-116995346-3	chr4	116995236	116995436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-12.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	19.79	22.13	27.95	22.52	17.18	14.74	15.94	16.51	18.69	21.59	33.16	13.78
Merged-chr11-98588288-3	chr11	98588197	98588397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1052.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	37.96	38.99	23.39	24.53	41.73	40.45	23.25	22.54	33.24	36.65	30.65	20.99
Merged-chr17-36951751-3	chr17	36951653	36951853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	39.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	173.63	188.39	162.58	177.77	184.91	236.75	121.24	196.63	233.86	175.23	265.81	144.1
Merged-chr15-6411542-3	chr15	6411436	6411636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	24788.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	69.86	60.87	79.86	67.17	108.41	129.82	72.08	100.96	100.9	99.92	91.95	54.51
Merged-chrX-134963400-3	chrX	134963293	134963493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031259, intron 1 of 21)	(CCCCG)n|Simple_repeat|Simple_repeat	504.0	NM_001289736	83454.0	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	21.4	31.94	38.79	25.74	30.68	36.69	14.28	31.99	46.03	38.16	55.27	37.28
Merged-chr1-136142879-3	chr1	136142772	136142972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	MIR|SINE|MIR	11482.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	38.76	35.21	62.18	86.47	52.77	56.44	93.01	107.5	78.48	51.72	131.15	65.16
Merged-chr9-88481869-3	chr9	88481767	88481967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284328, intron 1 of 11)	CpG	530.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	31.5	30.43	30.23	35.8	30.68	37.32	35.87	28.85	32.26	30.13	50.75	28.19
Merged-chr2-158409734-3	chr2	158409620	158409820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291138)	promoter-TSS (NM_001291138)	-133.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	79.14	64.14	86.71	94.92	82.64	108.18	59.79	65.33	100.7	132.56	129.64	74.24
Merged-chr5-136987485-3	chr5	136987349	136987549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310747)	promoter-TSS (NM_001310747)	430.0	NM_011962	26433.0	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	24.23	23.14	17.11	21.32	24.96	20.7	13.95	19.91	17.51	22.09	25.63	21.62
Merged-chr6-71279583-3	chr6	71279481	71279681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	7562.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	25.04	28.93	34.8	21.72	34.36	36.37	19.6	28.04	34.22	41.67	34.67	25.37
Merged-chrUn_JH584304-28841-1	chrUn_JH584304	28741	28941	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30848.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.7	16.07	10.05	19.11
Merged-chr9-44772918-3	chr9	44772820	44773020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023831)	promoter-TSS (NM_023831)	-89.0	NM_023831	76568.0	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	64.61	48.04	53.62	43.84	85.09	88.43	43.18	42.87	91.07	77.32	105.02	41.66
Merged-chr10-82048162-3	chr10	82048095	82048295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001319203)	promoter-TSS (NM_001319203)	68.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	21.0	31.44	29.09	40.62	21.27	23.52	29.23	32.22	26.55	26.11	37.18	27.25
Merged-chr2-119742251-3	chr2	119742149	119742349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-88.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	58.95	32.95	45.64	34.99	28.23	30.42	14.62	30.36	55.27	37.66	58.79	20.05
Merged-chr2-173659705-3	chr2	173659583	173659783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027957)	promoter-TSS (NR_027957)	-144.0	NR_027957	100043911.0	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	182.92	178.58	204.79	167.72	242.6	288.8	170.4	180.23	320.4	378.09	351.24	178.56
Merged-chr17-34315622-1	chr17	34315522	34315722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010382, intron 5 of 5)	intron (NM_010382, intron 5 of 5)	9755.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.04	5.28	1.14	2.01	0.0	0.0	1.0	0.28	0.79	1.0	0.5	2.51
Merged-chr1-43474253-3	chr1	43474150	43474350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28499.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	21.8	31.94	23.39	21.32	32.32	33.55	14.62	21.62	34.42	43.18	28.64	32.89
Merged-chr4-112288601-1	chr4	112288501	112288701	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102474, intron 8 of 9)	Lx2|LINE|L1	56356.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	45.63	28.62	25.63	15.98
Merged-chr10-19584287-3	chr10	19584193	19584393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7656.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	33.92	21.88	30.23	43.44	26.59	29.79	27.57	33.87	26.75	26.61	46.73	19.11
Merged-chr15-79413954-3	chr15	79413864	79414064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10661.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	44.01	39.99	49.63	43.04	54.82	50.17	19.93	56.47	46.81	41.17	49.24	37.28
Merged-chr8-126594019-3	chr8	126593903	126594103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	-567.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	91.66	74.2	131.21	98.14	94.91	118.53	103.97	102.42	148.3	119.0	173.36	86.77
Merged-chr8-121113422-3	chr8	121113319	121113519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2752.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	25.84	19.62	22.25	24.13	28.23	30.42	19.27	26.69	32.65	42.68	41.71	21.3
Merged-chr11-82764365-3	chr11	82764305	82764505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	60.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	38.76	59.11	39.93	28.15	48.68	50.17	48.16	43.51	64.12	50.21	62.81	30.7
Merged-chr5-30869611-3	chr5	30869504	30869704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144525)	promoter-TSS (NM_144525)	25.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	20.19	28.93	31.95	20.91	45.82	37.0	17.94	34.68	46.42	26.11	52.26	32.89
Merged-chr18-60733145-1	chr18	60733045	60733245	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-4.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	9.29	6.04	13.69	5.63	10.64	13.48	21.92	13.43	9.83	6.03	11.56	6.27
Merged-chr9-120002204-3	chr9	120002108	120002308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17466.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	136.48	137.08	116.94	89.29	121.09	190.97	86.7	72.53	158.14	181.76	139.19	62.65
Merged-chr5-138280198-3	chr5	138280106	138280306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-269.0	NM_172412	71951.0	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	97.72	88.79	86.71	72.4	118.23	197.24	127.22	98.08	89.69	160.67	118.59	80.82
Merged-chr15-51738782-3	chr15	51738692	51738892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	126669.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	58.55	42.26	48.49	60.33	36.0	34.81	43.18	32.69	26.95	21.59	33.16	22.56
Merged-chr19-44930990-3	chr19	44930894	44931094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-125.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	157.08	149.16	195.1	130.31	173.87	198.81	114.27	139.71	192.75	221.93	217.07	135.33
Merged-chr3-118070302-3	chr3	118070186	118070386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-201350.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	14.54	16.35	22.82	35.39	42.55	33.55	73.08	91.71	40.12	26.61	43.72	19.11
Merged-chr1-78490317-3	chr1	78490211	78490411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1414.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	35.94	14.09	19.4	31.77	19.23	23.2	23.58	42.08	22.23	19.08	42.71	25.37
Merged-chr6-90737613-3	chr6	90737508	90737708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-21079.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	35.13	36.47	14.83	27.75	39.68	42.33	20.59	32.52	57.43	51.21	45.22	38.22
Merged-chr18-77796273-3	chr18	77796157	77796357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152167, exon 1 of 3)	non-coding (NR_152167, exon 1 of 3)	133.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	40.78	40.75	62.75	49.07	81.82	100.66	68.43	86.78	85.17	101.93	101.0	55.13
Merged-chr17-70992917-2	chr17	70992816	70993016	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357820)	TTS (NM_001357820)	-2400.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	14.54	10.06	14.26	12.47	19.64	21.01	7.97	16.88	32.06	19.58	26.13	15.98
Merged-chr15-79834347-3	chr15	79834204	79834404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028763)	promoter-TSS (NM_028763)	29.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	25.04	19.62	18.25	16.89	33.14	33.87	23.25	22.4	16.92	25.61	26.63	14.1
Merged-chr12-64965648-3	chr12	64965552	64965752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	-90.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	252.78	252.53	252.14	289.18	299.05	320.16	270.05	375.17	314.7	334.9	428.12	180.75
Merged-chr6-31218489-3	chr6	31218375	31218575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-1.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	60.57	49.05	50.77	32.58	37.64	51.43	26.57	41.97	70.22	61.76	76.88	43.54
Merged-chr16-30064176-3	chr16	30064069	30064269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1188.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	141.33	129.79	145.47	127.9	130.5	152.71	132.2	165.53	193.74	216.41	224.11	123.43
Merged-chr10-120979461-3	chr10	120979413	120979613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-183.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	77.12	70.68	50.2	66.36	74.46	116.02	104.63	93.95	87.92	54.23	106.02	63.59
Merged-chr13-98316864-4	chr13	98316682	98316882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_137279)	promoter-TSS (NR_137279)	185.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	16.15	26.66	24.53	23.73	14.73	20.07	32.22	15.67	28.13	39.67	26.63	28.19
Merged-chr7-43466518-3	chr7	43466401	43466601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3268.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	24.23	30.69	20.54	20.51	42.14	38.26	21.59	28.21	36.58	34.14	43.72	17.54
Merged-chr6-59011890-3	chr6	59011795	59011995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	12607.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	28.27	30.94	60.47	59.12	42.14	19.44	47.83	57.9	49.37	35.15	74.87	19.74
Merged-chr10-37203954-3	chr10	37203854	37204054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65028.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	60.97	43.77	90.13	83.26	99.82	79.33	103.31	108.06	66.28	46.7	86.43	49.5
Merged-chr8-26976064-3	chr8	26975969	26976169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1267.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	36.34	18.86	41.64	31.37	41.32	38.88	28.9	27.9	38.75	29.12	44.22	23.18
Merged-chr2-118598200-3	chr2	118598078	118598278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-33.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	38.36	31.69	34.23	38.61	31.5	56.44	19.6	31.93	37.96	43.18	47.74	28.51
Merged-chr9-57645671-3	chr9	57645577	57645777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007783)	promoter-TSS (NM_007783)	-24.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	84.8	74.96	110.67	108.59	84.68	103.17	72.41	67.57	108.97	92.39	126.12	84.9
Merged-chr11-80085851-3	chr11	80085757	80085957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3543.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	22.61	16.1	19.4	28.56	40.5	37.0	24.58	42.22	36.19	19.08	43.72	24.12
Merged-chr10-128409902-3	chr10	128409819	128410019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-69.0	NM_027257	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	142.54	143.87	170.0	163.29	172.64	189.08	132.54	183.34	198.06	204.86	228.13	121.55
Merged-chr11-116581553-3	chr11	116581460	116581660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173755)	promoter-TSS (NM_173755)	-113.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	62.18	44.27	26.81	25.34	47.05	46.41	17.94	27.48	49.37	51.72	49.24	20.99
Merged-chr15-55090257-4	chr15	55090191	55090391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355594, exon 1 of 10)	exon (NM_001355594, exon 1 of 10)	200.0	NM_183089	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	10.5	21.13	11.98	17.7	20.05	21.32	36.21	18.62	16.92	22.59	24.12	23.49
Merged-chr2-29827238-3	chr2	29827134	29827334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026615)	promoter-TSS (NM_026615)	-155.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	139.71	121.74	111.81	100.95	104.32	162.74	62.12	94.57	146.73	130.55	137.68	81.76
Merged-chr18-9958045-3	chr18	9957957	9958157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153552)	promoter-TSS (NM_153552)	-123.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	72.68	75.46	58.76	71.59	64.64	93.13	78.39	78.48	67.86	81.34	97.98	62.03
Merged-chr18-23812870-3	chr18	23812760	23812960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8890.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	50.07	42.01	29.66	17.7	54.82	54.88	30.23	29.64	59.6	50.71	48.24	31.01
Merged-chr11-116306748-3	chr11	116306651	116306851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016857)	promoter-TSS (NM_016857)	-1.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	39.17	25.4	45.07	22.93	42.14	46.1	15.94	27.95	48.58	39.67	32.66	34.15
Merged-chr8-129234359-4	chr8	129234255	129234455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-309.0	NM_153780	72139.0	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	35.94	33.45	35.37	30.97	39.68	48.92	35.54	29.5	55.66	62.76	106.02	63.59
Merged-chr4-44013083-3	chr4	44012997	44013197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080384, intron 2 of 5)	CpG	447.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	36.34	34.71	30.8	27.35	45.82	30.1	22.59	32.72	34.81	43.18	40.2	32.89
Merged-chr3-98066648-3	chr3	98066536	98066736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	B3|SINE|B2	53098.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	40.38	30.43	45.07	37.0	42.14	48.29	37.87	52.6	21.83	26.11	28.64	24.75
Merged-chr6-54681650-3	chr6	54681562	54681762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	38.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	79.55	89.04	95.84	111.41	113.32	124.49	77.73	128.58	115.85	99.42	171.85	56.07
Merged-chr1-85838240-3	chr1	85838144	85838344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	44227.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	60.57	42.76	72.45	50.27	63.41	66.48	41.85	69.56	78.09	50.21	97.98	44.8
Merged-chrX-13463323-3	chrX	13463228	13463428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-4344.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	25.84	24.65	39.36	31.77	39.68	56.13	38.86	38.97	31.67	55.73	35.68	26.63
Merged-chr18-39489366-4	chr18	39489317	39489517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2172.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	31.09	42.26	16.54	30.16	26.18	40.45	41.85	25.51	29.5	33.64	34.17	25.06
Merged-chr9-23669427-3	chr9	23669334	23669534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-428584.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	19.38	16.6	39.36	25.34	40.91	40.76	41.52	47.69	33.63	39.16	36.68	22.56
Merged-chr17-51179409-3	chr17	51179306	51179506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285991)	promoter-TSS (NM_001285991)	-54.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	112.26	112.68	138.62	126.29	148.91	172.47	141.84	164.36	155.78	130.05	222.1	88.65
Merged-chr12-84617462-3	chr12	84617375	84617575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-9.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	79.95	85.77	95.84	81.65	74.87	103.17	72.41	79.35	92.64	75.82	121.6	54.82
Merged-chr2-128372407-3	chr2	128372304	128372504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028591, exon 2 of 2)	non-coding (NR_028591, exon 2 of 2)	56947.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	29.48	17.61	34.23	27.35	40.09	29.16	21.59	29.02	41.7	38.16	33.16	24.43
Merged-chr11-120086905-3	chr11	120086789	120086989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-62.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	166.77	139.6	170.57	156.86	204.96	226.4	143.5	146.94	198.85	184.27	236.67	104.94
Merged-chr6-128891216-3	chr6	128891124	128891324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254946)	promoter-TSS (NM_001254946)	-100.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	67.03	60.62	78.72	59.93	47.46	95.01	87.36	67.15	63.14	64.27	88.44	41.66
Merged-chr5-31766985-3	chr5	31766899	31767099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	68949.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	16.56	15.85	38.79	28.96	33.14	27.28	27.24	35.69	32.85	21.09	30.65	23.81
Merged-chr11-32554895-3	chr11	32554801	32555001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	(T)n|Simple_repeat|Simple_repeat	21635.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	28.67	12.58	10.27	16.09	24.55	26.03	14.28	27.36	35.6	32.64	24.12	16.6
Merged-chr19-37048736-1	chr19	37048636	37048836	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	122657.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.81	2.01	5.7	0.8	3.68	0.31	5.31	2.55	20.06	21.09	35.17	23.18
Merged-chr13-37844082-3	chr13	37844001	37844201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	16708.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	29.07	29.18	35.37	34.99	31.5	41.71	24.58	32.44	44.65	34.65	33.67	24.12
Merged-chr1-36875073-3	chr1	36874997	36875197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 3 of 40)	ORR1E|LTR|ERVL-MaLR	64430.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	30.69	33.7	27.38	40.22	25.36	37.32	32.55	37.77	33.63	28.62	47.23	20.99
Merged-chr15-25637927-3	chr15	25637804	25638004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	15354.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	143.35	168.52	157.45	140.77	123.14	170.9	103.64	133.01	157.15	146.61	173.86	75.18
Merged-chr9-22475677-3	chr9	22475536	22475736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181316)	promoter-TSS (NM_181316)	-79.0	NM_001360259	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	81.97	58.86	69.6	77.22	105.96	97.52	69.42	121.54	90.67	75.32	112.05	41.66
Merged-chr8-46778297-3	chr8	46778193	46778393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	38548.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	103.37	87.03	109.53	98.54	96.14	125.12	73.74	101.22	125.09	123.52	132.15	82.08
Merged-chr13-29292969-3	chr13	29292873	29293073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131896, intron 15 of 16)	RSINE1|SINE|B4	276718.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	18.17	29.93	38.79	46.66	22.09	22.58	17.94	32.47	43.86	19.58	33.16	31.95
Merged-chr1-180793687-3	chr1	180793589	180793789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19916.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	37.55	27.92	27.38	20.51	52.37	52.37	36.21	37.46	51.53	41.67	41.71	23.49
Merged-chr3-15428102-3	chr3	15427982	15428182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	25.44	18.61	30.8	29.36	33.14	49.23	30.89	42.06	44.06	44.69	49.24	28.19
Merged-chr6-5269314-3	chr6	5269219	5269419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183308, intron 5 of 8)	intron (NM_183308, intron 5 of 8)	-13086.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	43.61	35.97	31.38	51.08	39.68	67.1	38.2	50.38	52.12	50.21	50.25	35.71
Merged-chr14-19751218-3	chr14	19751120	19751320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-37.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	73.89	83.51	71.88	103.77	76.5	78.39	86.36	92.92	65.3	93.39	127.63	51.06
Merged-chr16-35983982-3	chr16	35983884	35984084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008465, intron 1 of 13)	CpG	621.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	41.19	37.73	35.37	39.82	29.46	48.29	35.21	38.89	59.99	43.18	88.44	36.34
Merged-chr9-21616058-3	chr9	21615964	21616164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011417)	promoter-TSS (NM_011417)	-105.0	NM_011417	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	121.54	130.79	152.88	116.64	152.19	188.14	92.01	145.6	189.41	192.81	188.43	93.35
Merged-chr1-97661589-3	chr1	97661468	97661668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	108.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	23.82	28.42	18.83	17.7	29.05	26.03	39.2	32.33	29.9	32.64	20.1	26.31
Merged-chr10-111996044-3	chr10	111995938	111996138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	1226.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	33.92	24.4	24.53	18.1	29.05	20.38	17.61	32.44	51.34	44.69	39.19	26.94
Merged-chr10-108191702-3	chr10	108191602	108191802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	29302.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	123.16	130.79	121.51	167.32	112.5	135.15	145.82	154.51	122.73	110.97	172.85	91.79
Merged-chr1-171844368-3	chr1	171844275	171844475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4678.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	94.49	75.71	119.8	114.63	85.91	75.26	90.35	102.81	86.15	100.42	118.08	85.84
Merged-chr10-20952585-3	chr10	20952484	20952684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026203)	promoter-TSS (NM_026203)	37.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	146.58	136.58	136.91	171.34	182.46	189.4	128.55	149.1	213.21	241.51	253.75	139.09
Merged-chr8-84976583-3	chr8	84976506	84976706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008416)	TTS (NM_008416)	2142.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	162.33	183.36	179.12	173.35	183.69	261.83	227.87	169.68	241.34	282.69	276.37	185.14
Merged-chr10-122815297-2	chr10	122815209	122815409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	135994.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	64.61	56.09	70.17	76.82	111.69	95.64	81.05	126.25	3.34	2.51	8.04	5.33
Merged-chr16-43448720-3	chr16	43448633	43448833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-28537.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	44.42	24.15	49.06	52.69	55.64	39.82	62.12	72.2	51.73	54.23	64.32	15.35
Merged-chr11-70374529-3	chr11	70374440	70374640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	-22509.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	48.05	28.42	39.93	41.43	37.23	50.49	23.92	37.54	27.14	36.15	43.21	20.68
Merged-chr4-119540455-3	chr4	119540371	119540571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290696, intron 1 of 11)	intron (NM_001290696, intron 1 of 11)	810.0	NM_172699	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	41.59	46.53	27.38	30.97	23.32	26.65	9.97	22.46	35.99	39.16	26.63	28.82
Merged-chr12-59132736-3	chr12	59132632	59132832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	1279.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	50.07	23.14	27.95	36.6	33.14	31.67	31.56	52.43	61.56	35.65	42.71	37.91
Merged-chr14-33185205-3	chr14	33185116	33185316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-150.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	48.86	19.87	42.78	28.56	33.96	44.84	39.86	56.55	46.03	46.7	61.81	31.64
Merged-chr1-85736624-3	chr1	85736520	85736720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177055)	promoter-TSS (NM_177055)	-14.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	27.46	17.61	23.96	18.1	33.14	27.28	16.61	29.02	27.54	23.1	27.64	27.25
Merged-chr10-40244713-3	chr10	40244621	40244821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023323, intron 1 of 9)	intron (NM_023323, intron 1 of 9)	2258.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	19.38	18.11	42.21	33.78	38.46	28.54	19.93	40.32	40.32	28.12	26.63	26.31
Merged-chr12-100776199-3	chr12	100776089	100776289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2868.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	50.07	50.81	66.74	70.79	80.18	90.31	65.44	58.18	54.09	59.25	56.28	41.66
Merged-chr19-44562815-3	chr19	44562745	44562945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176958)	promoter-TSS (NM_176958)	-9.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	47.65	35.21	67.88	38.21	42.14	55.82	33.88	54.2	60.19	56.24	74.37	39.78
Merged-chr12-76615467-3	chr12	76615372	76615572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-67547.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	14.54	19.12	33.66	35.39	29.46	27.59	23.58	31.15	30.49	34.65	48.74	21.62
Merged-chr4-141874948-3	chr4	141874860	141875060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025994)	promoter-TSS (NM_025994)	-40.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	41.99	57.6	49.63	54.3	81.0	80.27	54.81	59.47	116.24	95.9	159.79	67.04
Merged-chr11-114765333-3	chr11	114765228	114765428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-61.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	53.7	31.94	35.37	38.21	64.64	49.86	32.22	36.84	54.48	47.2	60.8	34.15
Merged-chr18-20801758-3	chr18	20801669	20801869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	19.38	30.94	46.78	37.4	33.55	27.91	42.52	42.95	26.95	28.12	35.17	28.82
Merged-chr1-53839911-3	chr1	53839785	53839985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 22 of 28)	intron (NM_001001883, intron 22 of 28)	-9539.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	37.96	30.43	55.33	60.33	30.68	37.94	42.85	55.37	29.7	19.58	52.26	24.75
Merged-chr9-78533489-3	chr9	78533388	78533588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51764.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	46.03	51.31	67.31	49.87	60.14	68.05	42.52	77.22	82.02	80.34	84.42	66.1
Merged-chr2-31742344-3	chr2	31742242	31742442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-17597.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	24.23	19.37	21.11	9.65	24.96	29.48	17.61	17.33	28.32	29.12	32.66	16.29
Merged-chr5-146819495-3	chr5	146819381	146819581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13409.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	46.84	30.43	74.16	65.96	38.05	48.6	44.84	63.39	44.25	39.16	59.8	48.24
Merged-chr18-35703119-3	chr18	35703025	35703225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	19.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	20.19	22.89	27.38	20.51	33.14	26.97	15.94	35.1	30.29	37.16	49.24	21.3
Merged-chr15-100737860-3	chr15	100737780	100737980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	58.95	54.58	82.15	73.6	60.14	78.08	69.76	76.26	100.11	59.75	98.49	47.62
Merged-chr5-29731133-3	chr5	29731024	29731224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4774.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	59.36	79.99	52.48	46.25	51.55	94.07	55.14	30.87	87.53	75.32	84.42	41.66
Merged-chr1-121431657-3	chr1	121431636	121431836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 1 of 23)	intron (NM_029955, intron 1 of 23)	669.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	49.67	47.79	38.22	30.16	24.55	41.71	44.18	29.02	40.91	19.58	43.21	35.4
Merged-chr11-82007094-4	chr11	82006996	82007196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28481.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	64.61	41.5	70.17	51.08	51.55	57.07	40.52	44.5	55.27	60.75	71.86	37.59
Merged-chr11-20631883-3	chr11	20631774	20631974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-103.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	125.18	139.6	176.84	148.01	166.51	207.59	158.45	163.51	219.9	217.91	304.5	143.79
Merged-chr9-50567619-3	chr9	50567517	50567717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008360, intron 3 of 7)	intron (NM_008360, intron 3 of 7)	-6349.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	41.99	19.12	34.8	40.62	37.23	44.53	42.52	41.02	55.07	47.7	36.18	28.19
Merged-chrX-53716708-3	chrX	53716613	53716813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110489)	promoter-TSS (NR_110489)	-135.0	NR_110489	331578.0	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	49.67	24.9	50.77	36.2	48.27	39.2	35.87	49.12	47.21	59.25	49.24	36.65
Merged-chr16-10897521-3	chr16	10897395	10897595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	22.21	15.85	42.78	19.71	23.73	41.39	51.15	40.18	30.68	32.13	69.85	37.59
Merged-chr14-57730074-3	chr14	57729964	57730164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4354.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	19.38	28.17	41.64	45.85	34.36	32.93	38.2	53.92	37.37	42.68	65.83	47.3
Merged-chr15-64197986-3	chr15	64197896	64198096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	114677.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	78.74	65.65	86.71	98.14	67.5	100.34	94.34	113.33	94.21	75.82	93.96	50.44
Merged-chr4-43973664-3	chr4	43973567	43973767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-9837.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	166.77	158.46	190.53	149.22	179.6	202.57	111.28	167.5	200.82	190.8	216.07	95.55
Merged-chr19-26605048-3	chr19	26604939	26605139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-121.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	224.51	222.6	268.69	348.71	320.74	312.32	328.18	391.07	274.97	298.25	460.27	196.42
Merged-chr4-83315509-3	chr4	83315382	83315582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	8707.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	47.65	31.94	30.23	32.98	32.73	40.45	44.18	39.34	42.68	49.71	43.72	24.75
Merged-chr1-64532881-3	chr1	64532743	64532943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009952)	promoter-TSS (NM_009952)	39.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	123.97	137.33	146.04	130.31	107.19	172.15	104.63	130.91	213.6	206.87	263.3	138.78
Merged-chr1-106759749-3	chr1	106759648	106759848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316750)	promoter-TSS (NM_001316750)	-6.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	186.15	200.72	196.24	194.26	183.28	237.69	176.71	250.01	261.99	230.97	343.7	133.45
Merged-chr19-41335906-3	chr19	41335803	41336003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	49167.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	53.3	41.75	74.16	61.54	78.55	92.19	42.85	56.89	78.48	59.25	55.78	36.34
Merged-chr5-105702061-3	chr5	105701950	105702150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	1240.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	28.27	17.36	29.09	19.71	19.64	31.98	25.24	26.05	30.09	38.66	36.68	26.63
Merged-chr5-147077556-3	chr5	147077523	147077723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181730, exon 1 of 3)	5' UTR (NM_181730, exon 1 of 3)	277.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	39.98	37.73	37.08	39.42	38.86	39.2	29.56	30.2	39.73	51.21	42.21	41.35
Merged-chr10-22212454-2	chr10	22212360	22212560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	38558.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	23.82	23.9	20.54	19.31	20.46	28.54	11.29	4.04	1.77	0.0	0.0	0.0
Merged-chr14-70101528-3	chr14	70101433	70101633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	1440.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	58.15	59.11	76.44	65.56	61.37	63.03	47.83	57.81	68.25	69.79	96.48	51.38
Merged-chr2-163764599-2	chr2	163764498	163764698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14359.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	29.48	19.87	35.94	16.09	33.55	23.52	23.92	36.11	0.79	0.0	0.5	1.25
Merged-chr8-25018019-3	chr8	25017905	25018105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027194, intron 1 of 3)	intron (NM_027194, intron 1 of 3)	794.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	39.98	32.95	35.94	33.38	32.73	50.8	28.23	38.58	46.42	39.67	51.25	23.81
Merged-chr1-58734240-3	chr1	58734139	58734339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 4 of 8)	intron (NM_001355056, intron 4 of 8)	3687.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	23.82	23.64	37.65	16.09	38.86	45.47	22.92	32.05	41.11	29.12	40.7	19.74
Merged-chr9-83538371-3	chr9	83538282	83538482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9956.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	40.38	24.15	78.72	67.97	101.46	76.2	95.33	114.65	90.08	83.85	112.56	48.56
Merged-chr11-108098643-2	chr11	108098538	108098738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	L1MB8|LINE|L1	101790.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	29.88	14.59	28.52	26.95	0.0	0.31	0.0	0.0	22.62	16.57	31.15	19.42
Merged-chr12-44266667-3	chr12	44266569	44266769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2485.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	33.11	42.01	26.81	16.49	23.32	47.04	28.23	15.98	77.5	65.27	54.77	17.54
Merged-chr15-68259733-3	chr15	68259641	68259841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-885.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	28.27	12.83	26.81	16.49	29.05	21.64	14.95	17.83	21.05	17.57	28.64	14.72
Merged-chr8-22962250-3	chr8	22962164	22962364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12572.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	7.27	19.62	37.08	22.12	20.05	5.96	19.6	25.63	17.9	18.08	26.13	26.63
Merged-chr5-66015187-3	chr5	66015103	66015303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10918.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	19.79	16.1	27.95	29.76	28.64	26.03	20.93	29.66	43.86	32.13	52.76	19.42
Merged-chr15-83408346-1	chr15	83408246	83408446	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	24504.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	3.23	7.29	7.42	2.82	15.55	14.74	13.62	9.34	8.65	5.02	6.03	4.07
Merged-chr16-76767805-3	chr16	76767712	76767912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	11280.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	18.17	20.12	45.64	35.8	33.96	56.13	40.86	48.17	67.46	70.29	60.3	35.09
Merged-chr16-32165487-3	chr16	32165397	32165597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347182)	promoter-TSS (NM_001347182)	97.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	50.07	58.35	47.35	58.72	50.32	78.71	30.56	41.3	96.57	78.83	93.46	36.65
Merged-chr4-116075873-3	chr4	116075795	116075995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	626.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	33.52	29.18	35.94	19.71	26.59	39.51	19.6	26.47	46.81	48.2	64.32	45.74
Merged-chr16-76604161-3	chr16	76604065	76604265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	55370.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	44.82	61.37	62.75	65.96	64.64	75.88	77.73	90.76	86.74	72.3	78.39	41.66
Merged-chr5-21332339-3	chr5	21332249	21332449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-40324.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	26.65	16.6	32.52	45.45	57.27	48.29	33.88	60.0	44.25	52.72	38.69	21.3
Merged-chr7-116529997-3	chr7	116529886	116530086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360375, intron 11 of 14)	ORR1B2|LTR|ERVL-MaLR	25617.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	37.55	31.19	46.21	49.07	42.14	40.76	29.23	54.95	49.96	64.77	103.51	31.95
Merged-chr5-139287292-3	chr5	139287203	139287403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33806.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	66.22	67.66	69.6	64.35	67.91	85.61	51.15	71.19	104.44	83.85	81.9	47.62
Merged-chr7-64285769-3	chr7	64285665	64285865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	21.4	19.37	37.08	34.99	33.14	32.3	19.93	42.65	46.22	34.65	29.14	17.54
Merged-chr5-148552694-3	chr5	148552610	148552810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	78.0	NM_011908	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	120.33	108.41	85.0	127.5	93.28	125.74	86.7	92.27	130.21	186.28	138.69	57.01
Merged-chr16-49699136-3	chr16	49699038	49699238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-156.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	198.26	184.62	171.71	183.4	240.96	272.18	191.33	209.75	256.28	256.07	336.66	173.24
Merged-chr14-70949699-3	chr14	70949591	70949791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	59584.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	21.8	22.39	42.21	22.12	31.09	27.91	27.9	50.72	17.11	18.08	37.69	19.42
Merged-chr14-19968488-3	chr14	19968389	19968589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	8204.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	28.67	24.4	19.4	26.14	36.82	32.61	13.62	18.25	34.42	37.66	31.66	15.04
Merged-chr5-109751889-3	chr5	109751791	109751991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82251.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	58.55	88.79	83.29	111.01	58.91	57.7	84.37	60.62	31.67	46.7	49.24	49.18
Merged-chr6-137413183-2	chr6	137413079	137413279	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 13 of 26)	MTE2b|LTR|ERVL-MaLR	2458.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.4	2.01	0.57	0.8	52.37	53.31	44.18	50.72	70.02	59.75	96.98	34.15
Merged-chr5-121255164-3	chr5	121255079	121255279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 2 of 75)	intron (NM_181421, intron 2 of 75)	34960.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	42.4	35.47	49.06	48.26	23.73	50.8	30.23	29.41	31.27	33.64	47.23	22.24
Merged-chr11-53772716-3	chr11	53772628	53772828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	2255.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	43.61	42.26	63.32	53.09	38.05	56.44	33.22	50.8	68.45	60.75	72.36	31.64
Merged-chr2-71353829-3	chr2	71353718	71353918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	13736.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	31.09	26.16	30.8	18.9	29.86	45.15	41.19	27.2	35.8	55.73	34.17	22.24
Merged-chr5-104859817-1	chr5	104859717	104859917	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001039231, exon 1 of 5)	5' UTR (NM_001039231, exon 1 of 5)	210.0	NR_155269	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	0.0	0.25	0.57	0.0	0.0	0.0	0.0	0.0	19.28	26.11	26.63	10.65
Merged-chr13-21167570-3	chr13	21167439	21167639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12392.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	13.33	6.79	10.27	12.07	11.45	9.09	4.65	12.59	15.74	6.03	17.08	9.08
Merged-chr6-108564227-1	chr6	108564127	108564327	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58940.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	41.3	47.2	62.81	33.21
Merged-chr8-70630925-3	chr8	70630837	70631037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011819, intron 1 of 1)	intron (NM_011819, intron 1 of 1)	1158.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	96.91	61.12	87.28	61.13	48.27	48.92	52.48	65.1	85.56	85.36	101.0	67.67
Merged-chr10-98799036-4	chr10	98798896	98799096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115646.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	14.94	13.33	5.7	23.33	23.73	31.36	28.9	11.75	22.23	38.16	24.62	16.92
Merged-chr9-13587296-3	chr9	13587253	13587453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32636.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	139.31	114.7	147.18	180.99	162.41	188.77	128.22	177.59	204.36	176.74	220.09	123.43
Merged-chr7-19310289-4	chr7	19310141	19310341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-196.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	73.09	70.43	66.17	65.96	70.77	82.16	68.43	38.41	76.91	92.39	85.92	48.56
Merged-chr14-52280033-3	chr14	52279932	52280132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-637.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	31.09	29.43	26.24	25.34	23.73	31.67	22.59	25.15	49.96	38.66	44.22	33.83
Merged-chr10-78169856-3	chr10	78169767	78169967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	-99.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	154.25	135.83	108.39	119.45	176.73	195.04	125.23	155.8	180.76	164.69	192.95	97.11
Merged-chr10-58498016-3	chr10	58497924	58498124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	87.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	66.63	116.46	81.0	121.87	85.91	129.82	145.49	86.52	88.71	114.48	114.57	80.2
Merged-chr6-65164353-3	chr6	65164263	65164463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19633.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	25.84	12.58	20.54	39.01	25.77	7.84	16.28	41.97	19.87	18.08	24.12	14.1
Merged-chr7-127708355-3	chr7	127708268	127708468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030428)	promoter-TSS (NR_030428)	-119.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	27.86	32.45	17.11	17.7	28.23	44.84	23.92	12.0	23.6	34.14	19.09	15.98
Merged-chr7-97581012-3	chr7	97580911	97581111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	1115.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	44.82	24.65	43.93	41.83	42.14	38.57	34.21	40.57	19.28	19.08	38.69	21.3
Merged-chr3-79591407-3	chr3	79591341	79591541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026352, exon 1 of 10)	5' UTR (NM_026352, exon 1 of 10)	104.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	36.75	28.93	56.48	35.8	53.18	45.47	40.86	40.4	42.68	43.18	45.73	33.52
Merged-chr14-62837395-3	chr14	62837316	62837516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-274.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	209.17	223.61	167.14	169.33	162.41	241.45	149.81	139.15	248.42	311.81	273.35	122.49
Merged-chr17-35823086-3	chr17	35822969	35823169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	-288.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	145.37	117.72	142.61	115.83	141.55	156.16	99.65	142.4	158.33	198.33	243.2	128.75
Merged-chr7-30421322-1	chr7	30421222	30421422	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-409.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	9.69	4.28	10.27	5.63	8.18	5.96	1.66	5.47	25.18	28.62	21.1	19.42
Merged-chr5-31291168-3	chr5	31291032	31291232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-18.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	127.2	110.42	134.63	82.45	103.5	120.1	70.42	105.36	158.92	152.64	150.74	110.58
Merged-chr17-29549733-3	chr17	29549633	29549833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	-69.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	51.69	37.98	42.21	39.01	57.27	44.84	30.56	50.44	51.53	32.13	59.8	37.28
Merged-chr3-59212573-3	chr3	59212504	59212704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	(TG)n|Simple_repeat|Simple_repeat	-1722.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	50.07	45.53	26.24	43.84	47.05	51.74	18.93	43.46	52.71	44.69	47.23	20.99
Merged-chr10-37195211-3	chr10	37195118	37195318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56292.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	107.41	102.37	143.76	153.64	118.64	136.72	128.88	146.41	120.77	103.94	156.27	84.58
Merged-chr12-25206106-3	chr12	25205988	25206188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	76914.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	38.76	18.86	46.21	34.19	25.77	30.42	36.87	8.52	34.42	31.13	46.73	17.86
Merged-chr1-132318677-3	chr1	132318567	132318767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	2542.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	68.65	38.74	55.33	42.23	71.59	57.7	84.04	119.41	82.61	74.31	72.86	41.04
Merged-chr2-144556202-3	chr2	144556044	144556244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-85.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	69.86	64.14	67.31	71.99	82.64	74.94	48.5	62.78	88.12	91.89	129.14	57.33
Merged-chr7-126792543-3	chr7	126792455	126792655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-8.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	86.82	86.53	68.45	77.22	118.23	120.41	57.8	74.08	121.16	144.61	138.69	68.92
Merged-chr16-93833047-3	chr16	93832942	93833142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	PB1D11|SINE|Alu	921.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	46.44	34.71	50.77	18.5	47.05	31.98	20.59	23.07	49.57	49.21	46.23	23.18
Merged-chr5-121721983-3	chr5	121721872	121722072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	Tigger15a|DNA|TcMar-Tigger	10363.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	58.15	59.86	70.17	30.57	45.41	65.22	43.18	64.43	64.91	74.31	67.84	43.86
Merged-chr17-35210343-3	chr17	35210228	35210428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4977.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	114.68	161.73	130.06	73.6	138.69	187.83	69.09	70.32	147.91	140.59	122.1	89.28
Merged-chr18-73815553-3	chr18	73815436	73815636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145494)	promoter-TSS (NM_145494)	-144.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	151.02	97.34	109.53	115.03	167.32	156.47	111.94	178.74	215.77	192.81	287.42	144.73
Merged-chr10-17722393-3	chr10	17722302	17722502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-826.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	32.71	47.54	38.22	34.99	50.32	34.49	28.23	52.93	68.25	62.26	68.34	25.06
Merged-chr6-51881361-3	chr6	51881252	51881452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	131197.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	32.3	20.37	37.08	39.01	44.59	33.24	24.58	52.21	33.04	20.59	28.14	19.42
Merged-chr13-5605614-3	chr13	5605536	5605736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	252456.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	23.82	12.58	49.06	29.76	24.14	36.37	30.23	45.98	49.17	14.06	36.68	18.48
Merged-chr10-87675206-3	chr10	87675112	87675312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153417.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	35.13	38.23	44.5	41.02	41.73	62.71	39.86	48.22	52.52	53.22	59.8	35.4
Merged-chr12-70472870-3	chr12	70472753	70472953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	L1M2|LINE|L1	19699.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	28.67	33.45	26.24	33.38	36.0	41.71	33.55	40.93	31.27	33.64	45.73	24.75
Merged-chr11-54088460-3	chr11	54088349	54088549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-12475.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	32.3	19.37	19.4	18.5	29.46	36.69	13.29	36.56	42.09	26.61	45.73	27.57
Merged-chr2-181319742-3	chr2	181319655	181319855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166665)	promoter-TSS (NM_001166665)	31.0	NM_001001882	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	24.63	22.39	29.66	32.98	35.59	22.89	18.6	23.1	33.04	22.09	26.13	14.1
Merged-chr9-14381052-3	chr9	14380942	14381142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	200.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	64.61	50.81	53.62	59.12	53.59	51.43	54.14	87.36	50.35	74.31	82.41	57.95
Merged-chr5-30036127-3	chr5	30036006	30036206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	22992.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	61.38	34.21	54.19	82.05	48.27	71.49	46.84	33.08	32.45	49.71	34.67	29.45
Merged-chr6-124733186-3	chr6	124733085	124733285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-31.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	94.08	75.46	95.84	89.29	122.32	134.21	95.0	115.91	147.52	128.54	155.77	86.77
Merged-chr2-128746708-3	chr2	128746617	128746817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47802.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	29.48	12.07	22.82	33.38	29.46	17.87	16.61	41.97	33.44	20.08	40.2	30.07
Merged-chr11-117109833-3	chr11	117109737	117109937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5335.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	76.72	64.64	86.14	76.02	60.14	101.91	45.18	74.13	103.26	100.42	59.29	49.5
Merged-chr4-129696778-3	chr4	129696652	129696852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199305)	promoter-TSS (NM_199305)	93.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	27.05	36.97	16.54	20.51	24.55	23.52	21.59	21.17	24.78	26.61	30.15	26.31
Merged-chr12-113074432-3	chr12	113074266	113074466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361919)	promoter-TSS (NM_001361919)	-136.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	16.56	10.56	18.83	12.87	26.59	24.77	17.61	26.13	15.14	9.04	28.64	12.22
Merged-chr9-116102078-3	chr9	116101974	116102174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73289.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	107.41	75.21	116.37	130.71	134.6	121.04	105.3	148.68	107.0	81.84	167.33	83.64
Merged-chr11-99024311-3	chr11	99024183	99024383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-94.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	97.31	52.07	49.63	45.05	55.64	69.3	41.85	38.3	80.05	97.41	44.72	51.38
Merged-chr4-139188123-3	chr4	139188040	139188240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4759.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	44.82	37.98	54.19	34.59	68.32	47.98	56.14	63.62	46.62	39.16	44.72	33.21
Merged-chr5-65076295-3	chr5	65076207	65076407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-31261.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	21.8	26.91	31.38	40.22	35.59	42.96	44.84	53.07	46.03	35.15	43.72	31.64
Merged-chr17-29245871-3	chr17	29245766	29245966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8076.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	46.03	26.16	51.91	23.73	40.91	41.71	29.23	34.09	35.21	17.57	53.77	13.47
Merged-chr5-117287644-3	chr5	117287544	117287744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018858)	promoter-TSS (NM_018858)	-80.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	93.68	92.56	96.98	111.01	117.41	117.9	72.41	80.13	146.34	121.01	170.84	98.99
Merged-chr14-69861598-3	chr14	69861496	69861696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	21189.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	31.9	12.83	33.66	23.33	27.41	37.32	15.28	25.32	30.88	48.7	45.73	23.49
Merged-chr12-117765025-3	chr12	117764924	117765124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78837.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	20.19	28.42	18.25	41.02	31.91	35.75	22.92	35.13	33.83	48.2	36.68	28.51
Merged-chr11-30649222-3	chr11	30649121	30649321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029344, intron 1 of 3)	CpG	175.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	28.27	34.71	27.38	44.24	38.46	44.21	33.88	39.98	46.42	59.25	74.87	34.15
Merged-chr2-173000082-3	chr2	172999994	173000194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-23.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	130.02	123.75	123.22	111.81	131.32	191.28	92.34	158.61	200.23	232.98	241.19	139.4
Merged-chr7-127393753-3	chr7	127393664	127393864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-143.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	71.88	53.58	69.6	66.77	84.68	91.88	61.12	65.66	113.69	102.93	102.51	59.21
Merged-chr11-75173261-3	chr11	75173147	75173347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029794)	promoter-TSS (NR_029794)	-141.0	NR_029794	387208.0		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	62.18	55.59	65.03	36.6	74.87	94.7	48.83	42.06	100.7	112.97	91.45	69.55
Merged-chr11-23770326-3	chr11	23770235	23770435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	635.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	31.9	30.94	36.51	47.46	26.59	51.74	26.91	42.28	52.91	44.19	51.25	38.85
Merged-chr9-118632545-3	chr9	118632455	118632655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	25846.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	16.56	15.09	14.83	28.15	24.14	28.54	29.9	34.68	27.54	29.62	37.18	26.94
Merged-chr17-26243821-3	chr17	26243727	26243927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	415.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	23.42	22.89	30.8	22.12	22.09	29.48	19.93	17.78	34.62	22.59	32.16	20.99
Merged-chr17-37028879-3	chr17	37028762	37028962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5464.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	78.34	125.26	71.31	117.04	86.32	88.43	109.62	88.35	90.08	103.43	124.11	78.94
Merged-chr13-94098540-3	chr13	94098458	94098658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40762.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	36.75	59.86	74.16	57.92	48.27	77.77	54.48	55.35	74.15	74.81	67.84	53.26
Merged-chr5-134352929-3	chr5	134352812	134353012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26458.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	49.26	48.04	76.44	65.16	78.55	76.51	56.8	77.94	70.41	71.8	83.41	53.57
Merged-chr2-11603222-3	chr2	11603120	11603320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-21.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	71.88	71.69	83.86	81.65	78.14	81.53	63.11	85.49	107.98	80.84	128.13	73.93
Merged-chr6-71930262-3	chr6	71930176	71930376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	21223.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	85.2	71.94	98.12	117.84	66.68	58.95	49.16	74.8	57.83	41.17	67.84	34.15
Merged-chr16-4754279-3	chr16	4754183	4754383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2663.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	19.38	20.88	28.52	18.9	28.64	33.24	31.89	35.97	35.01	36.15	39.7	26.0
Merged-chr10-121377136-3	chr10	121377050	121377250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 5 of 13)	intron (NM_029364, intron 5 of 13)	12060.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	48.86	50.81	31.38	18.5	71.59	87.49	38.53	56.8	82.41	95.9	52.26	44.48
Merged-chr1-64078548-3	chr1	64078436	64078636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-36035.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	21.0	21.38	21.68	20.51	34.77	39.82	34.55	42.31	34.03	26.11	30.65	15.98
Merged-chr9-47595430-3	chr9	47595335	47595535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	65083.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	19.38	27.42	35.37	30.97	30.68	35.12	14.28	23.02	31.08	41.17	19.09	25.06
Merged-chr18-46149708-3	chr18	46149614	46149814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49104.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	52.9	45.28	42.21	22.93	34.36	58.32	21.59	13.54	73.17	60.75	40.2	29.45
Merged-chr7-43654705-3	chr7	43654611	43654811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	5450.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	43.61	42.26	62.18	57.92	47.87	58.95	35.21	59.94	50.55	52.22	71.86	32.58
Merged-chr17-87282854-3	chr17	87282818	87283018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	32.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	79.14	68.42	62.18	64.35	73.64	98.46	58.79	88.07	90.48	91.38	107.53	55.45
Merged-chr5-53195072-3	chr5	53194985	53195185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172710, intron 2 of 23)	MIR3|SINE|MIR	18367.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	25.44	24.15	55.9	43.44	52.77	34.81	48.83	70.46	44.06	31.63	47.23	37.28
Merged-chr10-7955906-2	chr10	7955797	7955997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_138667, exon 1 of 7)	5' UTR (NM_138667, exon 1 of 7)	226.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	21.8	23.64	26.24	25.74	31.91	22.26	34.88	16.54	23.41	21.09	27.64	11.9
Merged-chr11-95851055-3	chr11	95850956	95851156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	-7761.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	85.2	84.01	112.38	63.15	148.1	178.42	91.01	112.79	146.73	146.61	137.18	97.11
Merged-chr18-9392764-3	chr18	9392607	9392807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 1 of 9)	intron (NM_026484, intron 1 of 9)	57447.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	24.23	16.6	28.52	28.15	23.73	10.98	15.61	24.62	34.22	19.08	11.05	11.59
Merged-chr4-44300931-3	chr4	44300843	44301043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	26.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	22.21	35.21	36.51	25.34	39.27	38.88	35.21	24.76	40.71	37.16	35.68	21.3
Merged-chrX-101419870-3	chrX	101419770	101419970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177986)	promoter-TSS (NM_001177986)	44.0	NM_001177986	56364.0	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	27.86	26.41	42.78	24.53	40.91	52.68	33.22	44.72	43.47	48.2	71.35	22.56
Merged-chr11-98787014-3	chr11	98786930	98787130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8486.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	38.36	47.54	47.35	32.18	38.46	52.68	16.94	33.34	60.19	59.25	72.36	43.54
Merged-chr4-41529060-1	chr4	41528960	41529160	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	11623.0	NR_045726	76992.0	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	0.0	1.01	0.0	0.0	0.0	0.63	0.33	0.28	13.96	6.53	17.59	5.64
Merged-chr1-58744933-3	chr1	58744923	58745123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	14471.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	21.8	35.72	35.94	16.09	35.59	66.16	37.2	27.25	47.01	41.17	28.64	20.05
Merged-chr11-120526153-3	chr11	120526069	120526269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-4558.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	28.67	39.99	50.2	22.12	36.41	61.77	24.58	25.29	70.22	52.72	57.28	36.03
Merged-chr17-83350800-3	chr17	83350700	83350900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286567)	promoter-TSS (NM_001286567)	-131.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	111.85	93.07	111.24	71.19	101.05	165.57	55.47	106.35	164.04	122.01	178.88	76.75
Merged-chr11-20741113-3	chr11	20741034	20741234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	CpG	422.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	20.59	23.9	17.11	14.08	13.5	23.2	23.25	13.35	24.0	22.09	26.13	17.23
Merged-chr10-128345061-3	chr10	128344950	128345150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7323.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	33.11	24.9	23.39	40.22	41.73	31.67	21.92	47.02	38.16	27.11	33.16	35.71
Merged-chr5-108132681-3	chr5	108132576	108132776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361467)	promoter-TSS (NM_001361467)	-56.0	NM_001361467	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	255.6	211.28	235.6	246.15	248.33	304.48	208.94	268.26	291.1	277.66	338.67	167.91
Merged-chr11-120519908-3	chr11	120519820	120520020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10807.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	56.94	42.01	25.67	21.32	53.18	78.39	43.18	45.28	78.09	63.77	81.4	29.45
Merged-chr14-27123698-3	chr14	27123616	27123816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20277.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	73.09	69.92	81.0	67.57	121.91	175.29	119.25	92.33	75.72	96.91	119.09	39.47
Merged-chr11-51689092-1	chr11	51688992	51689192	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-458.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	37.55	32.45	27.38	45.45	40.09	47.66	26.24	41.69	56.84	67.28	55.78	33.83
Merged-chr2-129586289-3	chr2	129586195	129586395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6544.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	114.27	79.73	130.63	148.41	113.32	138.6	106.63	150.87	103.26	122.51	167.33	80.2
Merged-chr2-23039808-1	chr2	23039708	23039908	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	CpG	433.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	34.73	40.5	39.93	32.98	31.09	47.35	29.9	26.83	62.94	81.84	86.43	43.86
Merged-chr8-122264448-3	chr8	122264342	122264542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17699.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	39.57	36.22	46.21	37.4	53.18	53.31	45.84	41.24	43.47	56.24	49.24	33.52
Merged-chr9-62980401-2	chr9	62980284	62980484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	CpG	495.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	16.96	17.36	14.83	10.86	11.86	24.15	9.97	15.56	30.09	28.62	27.13	17.86
Merged-chr9-20581394-3	chr9	20581292	20581492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172919)	promoter-TSS (NM_172919)	64.0	NM_172919	244721.0	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	92.87	84.51	104.96	139.56	107.59	108.5	107.62	127.04	130.4	110.97	172.35	86.46
Merged-chr19-12442704-3	chr19	12442568	12442768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	14763.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	68.24	56.09	54.76	63.15	86.32	96.58	59.46	70.46	71.0	72.81	86.93	47.3
Merged-chr6-5006761-3	chr6	5006654	5006854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	103434.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	23.82	16.6	30.8	40.22	38.05	38.57	33.22	46.4	31.67	29.12	54.27	21.93
Merged-chr10-122576745-3	chr10	122576693	122576893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6902.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	26.25	18.61	17.11	41.02	16.77	26.03	17.61	28.26	25.96	45.69	35.17	25.06
Merged-chr10-44381146-3	chr10	44381049	44381249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21473.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	56.13	61.37	82.15	59.12	66.68	62.09	56.14	92.78	91.26	57.74	110.04	52.0
Merged-chr9-99575858-3	chr9	99575782	99575982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031403)	promoter-TSS (NM_031403)	83.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	37.15	38.74	37.65	39.01	42.55	36.37	42.52	37.63	41.3	52.22	44.72	25.69
Merged-chr17-27571438-3	chr17	27571315	27571515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A2|LTR|ERVK	-5688.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	54.51	50.31	68.45	76.02	54.0	49.23	45.51	28.93	44.84	28.12	43.72	15.66
Merged-chr6-148946491-3	chr6	148946374	148946574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019643)	promoter-TSS (NM_019643)	-4.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	102.97	94.32	162.58	141.17	129.28	148.63	122.57	100.93	165.41	168.71	194.46	105.26
Merged-chr1-184728903-3	chr1	184728791	184728991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3602.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	41.19	53.83	42.78	26.95	49.09	83.1	27.9	36.95	73.76	73.81	73.36	26.0
Merged-chr4-141765241-1	chr4	141765141	141765341	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172338, intron 13 of 14)	intron (NM_172338, intron 13 of 14)	18566.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	2.02	4.28	1.14	0.0	42.14	33.55	13.62	35.19	1.18	1.0	0.0	1.88
Merged-chr11-85713658-3	chr11	85713590	85713790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6054.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	85.6	58.35	108.39	108.59	110.46	92.5	107.62	139.04	99.52	113.48	140.7	77.38
Merged-chr17-57290410-4	chr17	57290327	57290527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11327.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	16.15	18.36	9.7	22.93	22.09	26.97	33.55	24.87	23.41	26.61	16.08	15.66
Merged-chr17-57096279-3	chr17	57096171	57096371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-8489.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	51.69	59.61	52.48	35.8	75.28	95.33	37.2	48.67	89.3	80.84	77.38	37.59
Merged-chr9-25155965-3	chr9	25155862	25156062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4181.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	28.27	20.88	35.94	26.55	28.64	36.69	26.91	54.25	46.03	33.64	48.74	37.28
Merged-chr11-119392981-3	chr11	119392877	119393077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2505.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	31.09	27.42	34.23	20.51	28.23	31.98	13.95	19.99	41.7	30.13	23.11	22.87
Merged-chr7-108934314-3	chr7	108934225	108934425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-90.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	238.24	232.66	198.52	180.99	192.69	299.78	166.75	219.03	277.13	321.35	287.92	142.22
Merged-chr9-44407444-6	chr9	44407322	44407522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	126.0	NM_021789	60409.0	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	23.42	33.2	19.97	23.73	31.91	40.76	38.86	26.05	40.32	50.21	45.22	16.29
Merged-chr1-72244447-1	chr1	72244347	72244547	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	454.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	22.21	17.36	24.53	28.56	30.27	30.73	25.91	23.8	31.47	41.17	43.72	22.24
Merged-chr18-41951289-3	chr18	41951182	41951382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-88.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	57.34	71.43	59.9	74.41	97.37	100.97	66.43	93.17	72.77	68.79	87.43	51.06
Merged-chr11-103102896-3	chr11	103102817	103103017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1229.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	201.49	165.76	161.44	191.85	164.46	203.2	116.26	180.0	183.51	191.8	174.86	108.39
Merged-chr3-52198171-3	chr3	52198089	52198289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70148.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	38.76	60.62	40.5	43.44	67.5	64.91	37.54	61.71	75.72	57.24	73.36	63.28
Merged-chr17-35752777-3	chr17	35752656	35752856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19694.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	77.53	36.47	55.9	30.57	69.55	84.35	39.53	38.75	74.35	88.37	86.43	34.15
Merged-chr11-94707840-3	chr11	94707746	94707946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3347.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	64.2	55.84	58.19	41.83	58.91	74.32	51.49	60.45	68.05	70.8	79.89	52.63
Merged-chr8-61913959-1	chr8	61913859	61914059	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11265.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.81	1.01	5.13	4.02	3.27	3.45	12.29	14.61	3.34	7.53	5.02	3.45
Merged-chr6-122811015-3	chr6	122810926	122811126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9158.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	209.97	237.69	281.81	239.31	229.92	316.08	237.5	246.2	322.77	311.81	422.59	193.29
Merged-chr3-52103085-3	chr3	52102980	52103180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	CpG	1926.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	50.88	38.48	41.64	47.46	40.5	61.77	45.18	47.02	67.46	82.35	64.82	42.6
Merged-chr10-51531038-3	chr10	51530947	51531147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS3|LTR|ERV1	40149.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	101.76	89.04	116.37	72.4	119.87	137.34	154.79	136.88	144.57	193.81	214.06	133.45
Merged-chr10-4432467-3	chr10	4432370	4432570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	-82.0	NM_001358796	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	231.78	227.88	232.75	242.53	218.05	230.79	245.47	259.29	210.46	239.0	244.71	172.61
Merged-chr15-86185810-3	chr15	86185701	86185901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	73.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	44.01	27.67	55.9	47.86	59.73	40.45	62.45	67.35	47.8	37.16	67.33	46.68
Merged-chr11-78348112-3	chr11	78348005	78348205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011676, exon 4 of 5)	exon (NM_011676, exon 4 of 5)	1395.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	23.42	23.9	45.64	24.13	30.27	42.33	15.61	30.62	37.17	21.09	29.14	20.36
Merged-chr4-155803587-3	chr4	155803508	155803708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025570, exon 2 of 5)	5' UTR (NM_025570, exon 2 of 5)	730.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	86.82	55.08	59.33	66.36	85.5	92.5	54.48	60.39	93.43	117.49	97.48	64.22
Merged-chr7-19669101-3	chr7	19669011	19669211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4081.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	30.69	20.63	30.23	36.2	41.32	54.88	17.27	36.2	45.43	43.68	66.33	34.15
Merged-chr13-100859299-3	chr13	100859189	100859389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25862.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	76.72	79.48	85.0	51.08	108.41	131.39	65.77	80.64	126.27	116.49	141.2	48.87
Merged-chr8-57429413-3	chr8	57429306	57429506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26517.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	48.46	36.47	39.36	43.04	42.96	49.54	22.92	44.89	46.81	32.13	27.64	15.66
Merged-chr13-51398008-3	chr13	51397909	51398109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10609.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	50.07	34.21	49.06	73.2	29.86	38.57	52.48	65.41	43.47	41.17	63.82	36.34
Merged-chr9-21798651-3	chr9	21798522	21798722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145611)	promoter-TSS (NM_145611)	-76.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	38.76	59.11	38.22	69.58	43.36	49.23	77.06	43.09	33.83	45.19	58.29	39.47
Merged-chr1-93236348-3	chr1	93236223	93236423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172463, intron 1 of 30)	CpG	426.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	15.75	11.57	13.12	18.5	11.05	15.99	12.62	15.9	15.54	6.53	26.63	15.04
Merged-chr1-87637668-3	chr1	87637554	87637754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	MLT1M|LTR|ERVL-MaLR	17342.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	32.71	26.41	32.52	39.82	32.32	42.96	36.87	37.01	50.75	71.3	70.35	37.91
Merged-chr10-93803487-1	chr10	93803387	93803587	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-28068.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.0	2.01	0.0	0.8	1.64	0.94	3.32	1.32	26.16	17.57	32.66	16.92
Merged-chr2-164785877-3	chr2	164785769	164785969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-152.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	62.59	62.63	77.01	47.06	60.55	66.79	49.83	62.8	59.01	68.79	77.88	44.48
Merged-chr4-83324283-3	chr4	83324190	83324390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-101.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	180.09	207.51	255.56	226.44	207.82	255.88	241.49	248.05	273.2	247.04	396.96	167.28
Merged-chr6-3345372-1	chr6	3345272	3345472	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54199.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	1.01	0.0	0.8	0.0	1.57	0.66	0.0	16.13	19.58	19.09	18.48
Merged-chr7-126502525-3	chr7	126502408	126502608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347658)	promoter-TSS (NM_001347658)	-83.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	83.99	84.76	140.33	93.71	86.32	79.02	83.04	79.79	104.64	107.95	130.14	83.96
Merged-chr10-96751717-3	chr10	96751610	96751810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134709.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	37.96	23.14	29.09	20.91	30.68	24.46	21.59	36.7	23.6	17.07	50.75	23.18
Merged-chr17-70963769-3	chr17	70963681	70963881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	26735.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	211.19	364.72	244.73	248.16	73.64	81.53	65.44	5.41	79.07	51.72	81.4	132.51
Merged-chr8-71309601-1	chr8	71309501	71309701	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36887.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.85	5.03	4.56	1.61	15.14	13.17	16.28	25.85	5.7	4.52	5.53	9.08
Merged-chr2-27028050-3	chr2	27027929	27028129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-31.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	70.66	95.58	107.82	58.32	109.23	175.91	100.98	89.92	162.86	137.58	187.93	79.88
Merged-chr7-101896717-3	chr7	101896632	101896832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	401.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	108.62	89.8	100.97	101.76	96.14	113.83	59.79	87.31	124.31	129.54	128.64	79.57
Merged-chr15-50867085-3	chr15	50867008	50867208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	21941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	70.26	55.84	51.34	100.15	76.09	92.5	47.17	78.9	89.1	108.96	125.12	58.58
Merged-chr5-63943495-1	chr5	63943395	63943595	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	25402.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	1.62	1.01	0.0	3.22	15.96	14.42	14.28	31.88	1.57	1.0	0.0	1.25
Merged-chr5-144283827-3	chr5	144283731	144283931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025833, intron 7 of 13)	Kanga2_a|DNA|TcMar-Tc2	6770.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	56.94	35.72	70.17	84.86	76.09	69.93	60.12	83.97	61.56	51.72	63.31	50.12
Merged-chr12-73964461-3	chr12	73964343	73964543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-87.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	95.3	82.0	77.01	74.0	87.14	125.74	69.09	88.32	155.58	110.97	177.88	64.22
Merged-chr5-24827373-3	chr5	24827312	24827512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	14949.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	30.69	22.13	38.22	35.8	36.82	27.28	19.93	28.26	43.86	45.19	44.72	36.65
Merged-chr1-134420291-3	chr1	134420209	134420409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	4645.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	121.54	120.98	128.92	107.39	137.87	145.18	86.03	105.39	123.13	111.97	137.68	76.12
Merged-chr10-82953621-3	chr10	82953513	82953713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-31884.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	48.05	52.82	54.19	62.74	47.05	61.15	57.13	60.56	53.7	72.3	80.4	28.82
Merged-chr5-67845430-3	chr5	67845357	67845557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	1974.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	17.36	18.61	9.7	16.89	10.23	14.42	16.94	16.4	14.16	11.55	12.06	16.29
Merged-chr3-97768117-3	chr3	97768043	97768243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110360)	promoter-TSS (NR_110360)	-129.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	39.57	68.16	39.36	56.31	51.96	64.91	84.7	47.27	50.75	61.76	53.77	50.12
Merged-chr5-110176486-3	chr5	110176400	110176600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	4.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	81.57	89.54	67.31	94.92	99.41	93.76	60.12	75.9	143.39	137.07	148.23	75.5
Merged-chr17-70966217-3	chr17	70966069	70966269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24347.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	41.19	54.58	57.05	56.31	47.46	63.97	45.18	38.19	63.14	40.67	42.71	29.13
Merged-chr7-30280926-3	chr7	30280828	30281028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-507.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	113.06	88.79	114.09	77.62	98.18	102.85	73.74	78.14	77.89	56.74	69.34	61.71
Merged-chr7-30956071-3	chr7	30955968	30956168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011680, intron 3 of 9)	CpG-12986	735.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	56.13	41.5	28.52	41.02	46.23	47.66	33.22	45.03	48.98	51.21	43.72	36.34
Merged-chr14-64916045-3	chr14	64915941	64916141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	33816.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	67.03	61.37	78.15	65.96	65.46	45.15	34.88	52.43	64.71	57.24	67.84	41.04
Merged-chr2-152962348-3	chr2	152962227	152962427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083618)	promoter-TSS (NM_001083618)	-158.0	NM_029064	74711.0	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	48.86	51.81	88.99	48.26	149.73	136.72	117.92	131.47	229.34	183.77	258.28	120.92
Merged-chr14-40965734-3	chr14	40965646	40965846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	1150.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	30.28	31.94	38.22	27.35	30.27	27.91	28.9	43.01	26.36	30.13	63.31	21.62
Merged-chr18-36670296-3	chr18	36670158	36670358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164406)	promoter-TSS (NM_001164406)	53.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	69.45	55.08	64.46	71.19	69.14	69.93	49.83	59.33	72.77	73.31	115.07	43.23
Merged-chr9-65201679-3	chr9	65201583	65201783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13007.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	13.73	19.12	19.4	45.45	22.09	58.01	31.56	29.5	32.65	27.62	35.17	15.35
Merged-chr18-4257004-1	chr18	4256904	4257104	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91172.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.63	4.78	3.42	4.42	12.27	13.8	8.64	10.91	7.87	4.02	8.04	6.27
Merged-chr1-167308630-3	chr1	167308498	167308698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039483)	promoter-TSS (NM_001039483)	-72.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	92.87	94.32	76.44	87.68	87.14	105.67	75.4	81.45	98.15	124.02	128.13	67.35
Merged-chr8-94601838-3	chr8	94601749	94601949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	-92.0	NM_001359093	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	291.54	245.49	306.91	272.69	271.64	338.35	248.46	306.06	313.91	336.41	364.3	226.49
Merged-chr17-28486222-3	chr17	28486121	28486321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010220)	promoter-TSS (NM_010220)	-72.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	197.86	139.85	158.02	152.84	191.87	240.82	127.55	180.48	163.84	186.28	185.92	110.27
Merged-chr7-99143387-3	chr7	99143270	99143470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2226.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	74.3	70.93	92.98	71.99	100.23	103.48	90.35	85.32	128.24	106.95	120.6	97.74
Merged-chr11-119428959-1	chr11	119428859	119429059	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38487.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	2.83	7.04	3.99	2.82	38.05	51.43	13.62	42.65	5.7	1.51	7.03	5.01
Merged-chr12-25099579-3	chr12	25099474	25099674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3482.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	50.47	46.53	71.88	75.21	52.77	60.52	51.82	69.93	97.75	77.32	116.58	65.79
Merged-chr11-116436900-3	chr11	116436805	116437005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	2692.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	53.3	47.04	61.61	41.83	65.05	74.32	46.5	53.94	65.89	74.81	79.89	58.89
Merged-chr14-65102216-3	chr14	65102118	65102318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4112.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	36.34	31.44	33.66	53.49	18.82	29.48	15.28	33.81	42.68	44.69	43.72	22.24
Merged-chr18-55409463-3	chr18	55409367	55409567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-416876.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	60.57	77.97	86.14	104.57	92.87	129.82	88.69	102.79	116.83	124.02	161.8	101.5
Merged-chr9-96530824-3	chr9	96530732	96530932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	71.07	43.77	80.43	94.11	60.55	82.16	67.76	84.28	120.77	94.9	134.67	85.52
Merged-chr12-13249070-3	chr12	13248977	13249177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134040)	promoter-TSS (NM_134040)	97.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	4.85	15.34	6.85	12.47	26.18	16.93	27.57	13.32	17.7	12.05	23.62	12.84
Merged-chr5-92667026-3	chr5	92666916	92667116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360020, intron 3 of 9)	intron (NM_001360020, intron 3 of 9)	8111.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	36.34	17.86	26.24	17.29	28.23	35.75	17.27	39.2	51.93	31.13	35.68	24.75
Merged-chr6-125603412-3	chr6	125603306	125603506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011708, exon 14 of 52)	exon (NM_011708, exon 14 of 52)	50458.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	36.75	28.93	25.1	19.31	49.91	47.66	12.29	26.58	36.58	47.7	59.8	25.06
Merged-chr5-108434427-3	chr5	108434265	108434465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007507)	promoter-TSS (NM_007507)	34.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	48.86	44.02	61.04	39.01	54.0	59.27	40.52	61.6	42.68	43.18	50.75	31.33
Merged-chr18-9490697-3	chr18	9490594	9490794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40540.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	16.96	11.57	27.95	34.19	47.05	26.03	60.46	68.24	40.52	31.13	55.27	23.81
Merged-chr4-40148550-3	chr4	40148474	40148674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	5309.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	63.4	66.65	89.56	90.9	93.28	94.07	76.4	120.06	110.34	58.75	150.74	65.79
Merged-chr19-56703901-3	chr19	56703790	56703990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18482.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	93.68	75.71	91.84	96.53	120.28	161.18	116.26	89.69	96.38	122.01	116.58	75.81
Merged-chr16-8823865-3	chr16	8823767	8823967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6233.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	48.86	41.5	23.96	23.73	61.37	86.23	42.19	45.53	70.81	64.27	47.23	37.91
Merged-chr17-88058099-3	chr17	88057999	88058199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	PB1D9|SINE|Alu	6833.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	34.32	29.93	19.4	27.75	36.82	40.45	43.85	55.01	36.58	19.08	40.2	21.3
Merged-chr13-51072170-3	chr13	51072083	51072283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28544.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	25.84	24.15	54.76	30.57	31.5	28.85	26.91	33.67	39.34	22.09	40.2	29.45
Merged-chr3-96269628-3	chr3	96269539	96269739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	-61.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	128.41	123.0	108.96	127.9	139.5	160.24	66.77	117.06	126.67	110.97	122.61	69.55
Merged-chr10-86705622-3	chr10	86705532	86705732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	-179.0	NM_001003910	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	229.76	212.79	228.75	269.88	289.65	291.62	262.75	248.13	338.89	357.5	454.75	229.94
Merged-chr17-26538238-3	chr17	26538146	26538346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23266.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	53.7	43.26	62.18	53.89	53.18	70.24	46.84	53.3	85.95	57.24	58.79	48.87
Merged-chr2-60848687-3	chr2	60848575	60848775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	32763.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	24.23	27.42	23.39	18.9	29.05	42.96	21.92	40.37	46.81	46.7	60.8	29.13
Merged-chr2-166875069-3	chr2	166874970	166875170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085495, intron 30 of 38)	intron (NM_001085495, intron 30 of 38)	-31026.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	45.63	22.39	55.9	41.43	44.59	26.65	27.9	39.62	37.96	20.59	30.65	24.75
Merged-chr17-73361193-3	chr17	73361065	73361265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033444, intron 4 of 22)	intron (NM_001033444, intron 4 of 22)	38131.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	68.24	58.1	114.66	114.63	51.55	37.0	54.48	97.32	40.32	33.64	76.88	44.17
Merged-chr2-102944248-3	chr2	102944136	102944336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42571.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	204.72	201.22	240.16	258.21	215.6	272.81	191.33	207.9	195.51	224.44	240.69	148.8
Merged-chr10-13273934-3	chr10	13273785	13273985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	50404.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	36.75	39.99	26.81	61.54	53.59	37.63	45.51	69.34	46.42	43.68	71.35	36.03
Merged-chr10-8859630-3	chr10	8859525	8859725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	26445.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	18.98	16.35	31.95	22.12	33.96	16.93	24.25	37.54	33.04	16.07	37.69	24.12
Merged-chr1-171268393-1	chr1	171268293	171268493	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1935.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.4	0.25	0.57	0.4	2.05	0.31	0.0	0.0	61.17	54.23	68.84	52.63
Merged-chr15-73435063-3	chr15	73434978	73435178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11887.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	63.8	59.11	85.0	67.57	78.14	102.54	57.47	82.43	90.28	103.94	137.18	58.27
Merged-chr4-107066864-3	chr4	107066723	107066923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175471)	promoter-TSS (NM_175471)	43.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	99.74	69.67	86.14	86.88	97.78	89.68	79.06	94.32	84.77	77.32	111.05	53.88
Merged-chr17-26571588-3	chr17	26571498	26571698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	L1MD3|LINE|L1	10086.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	51.28	52.57	79.29	71.19	109.23	116.96	116.92	104.22	92.84	54.73	73.86	54.82
Merged-chr1-176814214-3	chr1	176814107	176814307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-453.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	51.69	76.46	47.92	59.93	55.64	57.07	57.8	51.79	62.74	66.78	56.78	49.5
Merged-chr10-78574685-5	chr10	78574614	78574814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359303)	promoter-TSS (NM_001359303)	201.0	NM_001359301	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	44.42	45.28	39.36	42.63	45.82	56.44	41.52	46.65	72.18	81.34	84.42	67.04
Merged-chr7-19309620-3	chr7	19309500	19309700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008036, exon 1 of 4)	5' UTR (NM_008036, exon 1 of 4)	445.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	88.03	68.67	34.23	53.89	56.87	64.28	12.95	20.55	71.59	94.4	62.31	50.12
Merged-chr3-90052673-3	chr3	90052590	90052790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165984)	promoter-TSS (NM_001165984)	-112.0	NM_001287086	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	139.71	105.14	127.21	100.55	133.37	154.9	104.97	88.77	175.64	193.81	181.9	102.44
Merged-chr7-101851932-3	chr7	101851839	101852039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	5251.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	29.88	25.15	29.66	17.7	16.36	18.81	19.27	19.85	33.24	23.6	29.14	18.48
Merged-chr6-114268921-3	chr6	114268830	114269030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13705.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	26.25	26.66	42.78	41.02	23.32	44.21	22.92	44.86	37.76	27.62	61.3	30.7
Merged-chr12-12264306-3	chr12	12264203	12264403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	2164.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	33.92	38.48	54.19	65.56	40.5	63.34	65.11	62.08	87.33	73.31	99.99	49.18
Merged-chr5-98017004-3	chr5	98016920	98017120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	13942.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	80.76	60.62	82.72	71.59	51.55	58.01	50.82	63.79	52.91	49.21	61.81	43.54
Merged-chr17-17766680-3	chr17	17766586	17766786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	62745.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	25.84	28.42	15.97	23.73	26.59	20.7	12.29	28.6	33.04	35.15	26.63	24.75
Merged-chr17-34032268-3	chr17	34032104	34032304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-146.0	NM_001205216	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	35.94	41.25	31.95	14.48	23.32	26.03	15.28	18.28	35.4	22.59	32.16	14.72
Merged-chr19-34878054-3	chr19	34877957	34878157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-140.0	NM_023792	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	110.24	101.87	109.53	111.41	78.55	105.05	70.09	93.45	79.86	82.85	102.0	30.7
Merged-chr9-32540244-3	chr9	32540139	32540339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1213.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	92.07	95.08	83.29	83.66	85.91	111.0	60.79	88.88	90.28	103.43	105.02	48.56
Merged-chr10-41523412-3	chr10	41523298	41523498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	3898.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	28.27	38.48	38.22	31.37	15.14	29.48	18.27	31.77	29.7	36.15	22.11	19.11
Merged-chr10-61374316-3	chr10	61374214	61374414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	9209.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	20.19	17.61	22.82	20.91	30.27	31.36	18.93	29.1	26.36	31.13	44.22	22.87
Merged-chr12-76371032-3	chr12	76370921	76371121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	CpG-3289	755.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	29.07	25.91	30.8	25.74	23.32	37.32	14.28	24.67	54.09	28.62	49.24	26.94
Merged-chr8-106893209-2	chr8	106893105	106893305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	388.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	15.34	21.88	21.68	22.12	28.64	25.09	36.21	22.01	21.24	26.61	23.11	21.3
Merged-chr2-132169367-3	chr2	132169285	132169485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24065.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	80.76	51.81	84.43	102.96	106.37	145.81	88.03	108.87	120.37	117.49	162.8	91.79
Merged-chr4-8888499-3	chr4	8888414	8888614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137190.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	42.8	36.47	71.88	43.44	67.5	56.44	72.41	82.49	76.71	63.27	131.15	66.1
Merged-chr18-62046512-3	chr18	62046408	62046608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	93433.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	37.15	27.42	43.35	42.63	33.14	36.37	30.89	33.84	36.39	34.65	58.79	31.33
Merged-chr1-36082418-3	chr1	36082327	36082527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14027.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	57.74	51.56	64.46	70.38	62.59	100.97	97.33	119.24	63.14	61.26	131.15	55.13
Merged-chr14-55886120-3	chr14	55886029	55886229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027143, intron 2 of 7)	intron (NM_027143, intron 2 of 7)	1187.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	72.28	55.34	58.76	52.69	54.0	62.09	26.24	64.01	68.45	72.81	65.32	41.66
Merged-chr13-5865505-2	chr13	5865398	5865598	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4009.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.48	5.28	2.28	8.85	13.09	15.05	12.62	5.69	15.74	5.02	10.55	7.83
Merged-chr3-135612961-3	chr3	135612866	135613066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 11 of 24)	intron (NM_008689, intron 11 of 24)	78581.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	27.46	21.63	23.96	25.74	29.86	28.85	23.58	35.5	34.22	47.7	47.74	24.43
Merged-chr11-118401983-3	chr11	118401882	118402082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-23.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	55.32	53.07	54.76	49.47	72.0	94.39	48.83	64.43	58.42	60.75	74.87	48.87
Merged-chr4-119966894-3	chr4	119966808	119967008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	152230.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	194.63	179.34	228.75	195.07	227.05	316.39	211.93	188.89	212.03	234.48	259.28	109.33
Merged-chr11-49250588-3	chr11	49250490	49250690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110150)	promoter-TSS (NM_001110150)	38.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	45.23	40.24	41.64	56.31	42.96	43.9	28.9	35.61	44.84	54.73	53.77	41.98
Merged-chr13-92484018-3	chr13	92483944	92484144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-13.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	66.22	49.55	55.33	47.06	65.87	69.61	33.22	63.25	79.27	75.82	65.32	41.35
Merged-chr4-129033290-3	chr4	129033185	129033385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	96.91	105.39	98.69	65.56	104.73	146.75	52.48	65.24	119.98	124.02	96.48	73.93
Merged-chr4-134535323-3	chr4	134535221	134535421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029759)	promoter-TSS (NM_029759)	-53.0	NM_001355187	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	113.06	78.23	83.29	100.55	93.28	119.47	68.43	113.27	142.4	111.97	159.29	74.56
Merged-chr4-132049234-3	chr4	132049133	132049333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128606)	promoter-TSS (NM_001128606)	-155.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	65.01	29.68	49.06	50.27	51.96	58.32	41.85	58.65	72.97	58.75	85.42	31.95
Merged-chr14-70443347-3	chr14	70443234	70443434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164082)	promoter-TSS (NM_001164082)	-107.0	NM_001164082	67065.0	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	28.27	43.77	45.07	61.54	47.05	59.89	67.1	48.65	36.98	53.73	45.22	47.3
Merged-chr2-25574875-3	chr2	25574748	25574948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	23.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	48.86	86.78	51.34	74.0	57.27	90.62	69.42	45.03	76.51	78.83	92.96	55.45
Merged-chr5-125361201-3	chr5	125361113	125361313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-20119.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	19.79	24.4	26.81	15.28	27.82	31.67	23.58	28.68	39.73	52.22	34.17	23.81
Merged-chr5-129941691-3	chr5	129941623	129941823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001327)	promoter-TSS (NM_001001327)	-386.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	168.79	212.29	175.7	163.7	208.23	268.73	157.45	152.86	339.29	408.71	363.29	209.26
Merged-chr13-58999806-3	chr13	58999711	58999911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192114.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	49.67	71.43	102.11	43.44	102.68	101.91	64.44	102.51	53.11	73.81	82.91	64.22
Merged-chr9-37255674-3	chr9	37255583	37255783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	55.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	56.94	59.86	43.93	49.47	56.05	85.29	53.15	65.16	76.91	70.8	59.29	35.09
Merged-chr13-74815954-1	chr13	74815854	74816054	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7194.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	8.08	5.03	3.99	7.24	11.05	6.9	2.66	12.59	6.69	1.0	3.52	13.47
Merged-chr8-41025790-2	chr8	41025700	41025900	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	MTC|LTR|ERVL-MaLR	8332.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.63	3.27	1.71	6.44	5.73	0.94	8.64	16.74	24.59	28.62	54.77	21.62
Merged-chr2-121289571-3	chr2	121289447	121289647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032393)	promoter-TSS (NM_032393)	-55.0	NM_032393	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	18.17	23.9	7.42	26.95	20.46	30.1	18.6	22.82	54.48	42.18	79.89	39.78
Merged-chr2-18057847-3	chr2	18057754	18057954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	8.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	35.94	41.75	31.95	24.53	30.68	45.78	33.22	27.14	55.27	41.17	51.76	29.45
Merged-chr1-77280825-3	chr1	77280727	77280927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215941.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	71.47	54.83	77.58	72.4	80.18	75.88	47.17	81.62	98.15	88.87	138.69	63.59
Merged-chr15-95790838-3	chr15	95790741	95790941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-2.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	142.14	123.75	117.51	132.73	94.91	163.69	87.36	129.25	186.66	156.15	213.05	93.98
Merged-chr11-45623649-1	chr11	45623549	45623749	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-184434.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	7.27	5.28	7.99	9.25	20.46	5.33	16.61	15.64	0.79	1.0	1.0	1.25
Merged-chrM-228-2	chrM	175	375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											43326.87	47873.82	52622.34	58786.72	43343.7	50594.35	51062.31	71375.25	0.0	0.0	0.0	0.0
Merged-chr19-11950068-3	chr19	11949963	11950163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-15781.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	23.02	19.87	37.65	20.51	18.0	22.89	20.93	24.14	31.27	37.66	45.73	18.17
Merged-chr2-69885615-3	chr2	69885519	69885719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	-4.0	NR_110977	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	33.52	25.91	28.52	21.32	34.36	18.81	24.25	29.24	34.03	26.11	49.24	28.82
Merged-chr1-138856727-3	chr1	138856562	138856762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081226, exon 1 of 3)	exon (NM_001081226, exon 1 of 3)	192.0	NM_001081226	69549.0	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	37.96	63.64	51.34	71.99	42.14	54.25	73.41	12.79	29.7	44.69	42.21	27.57
Merged-chr8-94549689-3	chr8	94549587	94549787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153507, intron 2 of 15)	ID_B1|SINE|B4	16659.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	21.0	16.1	30.8	37.0	19.64	24.46	24.58	51.0	41.5	39.67	41.71	29.13
Merged-chr2-116914162-3	chr2	116914056	116914256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14004.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	42.8	25.66	48.49	41.02	47.46	59.27	66.43	86.22	55.07	69.79	59.29	38.53
Merged-chr15-100049839-3	chr15	100049737	100049937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	11173.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	31.9	24.9	28.52	18.5	16.77	30.42	17.27	12.53	34.62	19.08	30.65	15.35
Merged-chr5-30949996-3	chr5	30949886	30950086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003522)	promoter-TSS (NR_003522)	-80.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	103.37	80.99	99.83	84.46	122.73	139.23	81.71	82.12	107.59	120.0	115.07	63.59
Merged-chr17-87275545-3	chr17	87275423	87275623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	7291.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	81.16	63.39	64.46	27.35	72.41	101.6	43.18	60.76	73.56	73.81	65.32	48.24
Merged-chr12-80839851-3	chr12	80839765	80839965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	49333.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	39.98	38.23	37.65	37.4	38.05	66.79	26.57	27.14	52.12	35.15	51.25	26.63
Merged-chr8-22808630-3	chr8	22808518	22808718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2964.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	35.94	41.0	45.07	72.8	52.37	59.58	42.85	49.43	88.9	72.81	65.83	40.72
Merged-chr5-36576405-3	chr5	36576321	36576521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5976.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	74.7	54.08	90.13	82.85	66.27	54.88	51.15	67.68	80.64	42.68	62.81	56.7
Merged-chr11-103953960-3	chr11	103953856	103954056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008740)	promoter-TSS (NM_008740)	100.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	18.17	21.38	27.95	22.93	22.91	21.01	20.26	15.84	17.11	17.07	25.12	13.78
Merged-chr5-112277199-1	chr5	112277099	112277299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	508.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	17.77	13.33	12.55	24.13	16.36	14.42	16.61	12.67	19.08	24.6	17.08	18.17
Merged-chr17-71182476-3	chr17	71182373	71182573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1059.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	58.95	43.51	73.02	52.29	56.46	54.25	38.86	67.07	66.28	46.19	48.24	35.09
Merged-chr7-13023259-3	chr7	13023175	13023375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-877.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	49.67	39.99	51.34	42.63	70.77	71.81	37.54	61.82	55.27	45.69	72.86	34.46
Merged-chr11-103258406-3	chr11	103258310	103258510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	8991.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	53.7	43.01	41.07	33.38	46.23	42.65	21.26	30.53	50.94	38.16	52.76	27.57
Merged-chr7-130657959-3	chr7	130657865	130658065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-34591.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	56.53	30.69	49.63	67.97	47.05	44.84	20.59	36.93	41.3	26.11	45.73	20.05
Merged-chr19-4065098-3	chr19	4064998	4065198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-5651.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	22.21	16.1	7.99	11.26	21.27	24.15	4.65	3.7	29.5	28.12	10.05	3.76
Merged-chr4-8917381-3	chr4	8917274	8917474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166050.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	97.72	76.97	128.92	95.72	106.78	111.32	109.62	123.87	244.09	261.6	268.33	142.85
Merged-chr14-75195743-3	chr14	75195642	75195842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-46545.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	77.53	60.62	94.13	85.67	74.05	117.59	68.76	92.36	88.31	92.89	85.92	59.21
Merged-chr9-100866230-3	chr9	100866119	100866319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	168665.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	36.75	41.25	59.33	76.42	48.68	73.69	61.12	67.79	65.1	55.73	88.44	31.95
Merged-chrX-109120019-3	chrX	109119926	109120126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	24619.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	39.98	35.72	37.08	27.35	54.82	64.28	41.85	31.96	59.6	39.67	43.72	31.01
Merged-chr7-28179402-3	chr7	28179303	28179503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010092)	promoter-TSS (NM_010092)	-80.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	101.76	83.51	63.89	103.37	96.14	125.43	64.44	79.4	123.32	119.0	111.05	77.38
Merged-chr8-22476910-3	chr8	22476806	22477006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-27.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	47.24	32.7	42.21	50.68	47.46	42.02	17.94	41.07	52.12	55.23	68.84	36.34
Merged-chr7-141475288-3	chr7	141475181	141475381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053082)	promoter-TSS (NM_053082)	45.0	NM_053082	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	32.71	28.17	27.38	24.53	30.27	31.98	29.23	23.66	34.81	44.69	41.71	33.52
Merged-chr8-72583246-2	chr8	72583153	72583353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357280, intron 4 of 4)	ORR1D2|LTR|ERVL-MaLR	11430.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	46.84	37.73	62.75	68.78	3.27	0.31	1.33	4.82	55.27	73.31	73.86	47.93
Merged-chr14-26643428-3	chr14	26643322	26643522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	5288.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	49.67	45.28	54.19	54.7	40.91	53.93	22.26	46.09	53.3	53.73	64.82	30.07
Merged-chr15-100039065-1	chr15	100038965	100039165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	CpG	401.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	14.54	12.83	21.68	8.04	5.73	8.78	13.95	6.76	23.6	8.54	14.57	8.14
Merged-chr17-47508147-3	chr17	47508066	47508266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	3115.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	39.57	45.53	43.93	46.25	78.96	62.71	42.52	59.61	67.66	53.22	63.82	33.83
Merged-chr5-102031068-3	chr5	102030959	102031159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	38862.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	79.55	61.37	93.55	81.24	88.37	81.22	75.07	120.9	73.76	60.75	125.62	50.12
Merged-chr12-16877707-3	chr12	16877602	16877802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17276.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	39.17	31.44	33.66	49.47	34.77	45.15	28.9	30.25	55.86	59.75	66.33	35.4
Merged-chr11-70445631-3	chr11	70445553	70445753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6278.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	24.63	21.63	20.54	21.72	20.46	24.15	12.62	8.36	23.21	29.62	31.66	17.86
Merged-chr16-17146914-3	chr16	17146809	17147009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026940)	promoter-TSS (NM_026940)	-58.0	NM_026940	69101.0	Mm.101656	NM_026940	ENSMUSG00000041774	Ydjc	1810015A11Rik|4930521M19Rik	YdjC homolog (bacterial)	protein-coding	27.05	14.59	18.25	15.28	27.41	26.65	23.58	23.07	36.39	26.11	26.63	13.16
Merged-chr18-73754453-3	chr18	73754370	73754570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	9.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	63.4	71.43	53.05	71.99	45.0	59.58	59.79	59.89	55.27	54.23	74.87	31.64
Merged-chr11-87019640-3	chr11	87019537	87019737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25875.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	18.57	12.83	15.4	20.51	44.59	32.61	31.56	45.14	52.91	32.64	38.69	24.75
Merged-chr13-106813419-3	chr13	106813419	106813619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	123439.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	12.52	7.55	10.84	26.55	25.36	22.26	26.24	25.85	19.08	24.6	28.14	11.59
Merged-chr6-145211052-3	chr6	145210949	145211149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133688)	promoter-TSS (NM_133688)	-79.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	232.99	279.95	265.83	296.42	316.65	417.05	191.33	325.21	469.3	508.13	517.05	283.51
Merged-chr3-96489219-1	chr3	96489119	96489319	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35966.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	40.12	27.11	31.66	24.75
Merged-chr11-58960200-3	chr11	58960109	58960309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1502.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	29.07	33.7	30.23	24.13	24.14	37.94	36.21	28.49	37.17	45.69	51.76	33.21
Merged-chr11-119925408-3	chr11	119925316	119925516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	11606.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	73.49	82.0	91.27	122.27	92.87	105.99	81.05	100.43	56.84	37.16	96.98	55.45
Merged-chr12-102252737-3	chr12	102252642	102252842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-30332.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	35.13	36.22	22.82	23.33	28.23	36.37	15.28	28.15	35.01	27.11	32.66	14.1
Merged-chr5-25101372-3	chr5	25101275	25101475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145401)	promoter-TSS (NM_145401)	400.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	26.65	15.59	19.4	33.38	77.32	86.86	61.78	99.22	29.9	30.13	51.76	26.63
Merged-chr2-30237602-3	chr2	30237477	30237677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	54.0	NR_028299	67350.0	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	77.53	90.55	90.13	73.6	114.14	136.72	71.08	94.91	126.08	99.92	128.13	76.75
Merged-chr5-137787329-3	chr5	137787227	137787427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-4.0	NM_001360023	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	23.82	21.38	37.65	25.34	29.05	33.55	14.62	16.93	37.76	30.13	50.25	15.35
Merged-chr13-95494983-1	chr13	95494883	95495083	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16328.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	0.0	0.25	1.71	1.61	0.0	0.0	0.0	0.0	40.32	37.66	43.72	22.56
Merged-chr10-80475495-3	chr10	80475394	80475594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19412.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	44.01	30.94	39.36	25.74	42.14	52.99	29.56	33.98	54.09	47.2	79.89	43.23
Merged-chr7-114892833-3	chr7	114892735	114892935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55815.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	21.8	35.21	25.1	15.28	27.82	36.37	22.59	25.71	31.67	46.7	27.13	21.62
Merged-chr4-62286478-3	chr4	62286382	62286582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	53.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	58.15	78.73	43.35	55.5	62.59	75.57	63.44	49.99	82.41	87.87	79.39	42.6
Merged-chr9-58266669-3	chr9	58266575	58266775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13511.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	23.02	18.36	15.4	4.83	32.73	25.4	16.94	30.34	34.42	28.12	42.21	22.87
Merged-chr11-20201872-3	chr11	20201768	20201968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	CpG	456.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	33.52	22.13	19.97	24.13	32.73	39.51	31.56	26.66	35.99	41.17	57.79	40.1
Merged-chr7-35169532-3	chr7	35169426	35169626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16859.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	12.52	21.88	27.95	21.32	17.18	29.79	21.92	26.64	17.9	21.09	32.16	13.16
Merged-chr19-4060840-3	chr19	4060749	4060949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1402.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	27.05	17.61	34.23	26.95	19.64	30.1	24.25	28.71	31.86	61.26	56.78	24.75
Merged-chr15-100615361-3	chr15	100615231	100615431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011873)	promoter-TSS (NM_011873)	-221.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	167.58	175.31	173.99	102.96	179.19	212.92	113.27	112.37	236.03	331.39	261.29	139.4
Merged-chr17-33890798-3	chr17	33890709	33890909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-176.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	209.97	192.17	200.23	228.05	209.05	248.04	118.25	115.77	299.95	339.42	282.4	162.59
Merged-chr2-140778358-3	chr2	140778270	140778470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-106894.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	18.98	23.64	43.93	38.21	29.46	40.45	29.56	50.3	47.4	48.2	37.18	23.81
Merged-chr7-35056620-3	chr7	35056507	35056707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-41.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	143.75	147.9	137.48	137.55	170.6	171.52	109.95	141.11	163.05	176.24	218.58	90.85
Merged-chr14-76964197-3	chr14	76964083	76964283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72434.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	44.42	27.17	37.08	64.35	33.14	46.72	54.81	74.3	27.34	35.15	51.76	20.68
Merged-chr16-88487945-3	chr16	88487831	88488031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19047.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	25.44	16.35	22.25	20.91	44.18	52.37	36.21	79.37	57.63	56.24	63.31	46.05
Merged-chr2-79757933-1	chr2	79757833	79758033	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290743, intron 3 of 4)	intron (NM_001290743, intron 3 of 4)	50153.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	2.02	2.77	4.56	5.23	5.32	0.63	2.99	3.73	14.36	1.51	22.61	10.96
Merged-chr5-123906648-3	chr5	123906563	123906763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-612.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	33.11	22.13	19.97	14.08	36.82	60.83	14.62	18.9	64.91	58.24	36.18	27.25
Merged-chr15-98881468-3	chr15	98881363	98881563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026967)	promoter-TSS (NM_026967)	-49.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	91.26	86.27	61.61	65.56	94.91	97.21	70.09	55.96	136.7	97.91	166.82	53.26
Merged-chr7-88192894-3	chr7	88192782	88192982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-85203.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	65.01	49.55	71.31	106.18	56.05	55.19	94.67	91.21	34.81	30.63	64.32	33.21
Merged-chr4-120570103-3	chr4	120570016	120570216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355491)	promoter-TSS (NM_001355491)	160.0	NM_016748	51797.0	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	52.49	81.24	70.74	74.81	40.91	68.05	99.32	63.45	71.2	78.33	91.95	56.07
Merged-chr15-39771056-3	chr15	39770978	39771178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	25148.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	143.35	119.22	155.73	180.99	194.73	217.31	202.62	220.4	215.57	191.3	328.62	147.86
Merged-chr2-66144963-3	chr2	66144881	66145081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20188.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	33.92	26.16	31.95	49.47	38.05	45.15	31.89	62.47	47.01	24.1	57.28	29.13
Merged-chrX-140956778-3	chrX	140956663	140956863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016883)	promoter-TSS (NM_016883)	-52.0	NM_001164177	53380.0	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	91.26	74.45	98.12	71.59	78.96	93.13	63.78	88.21	104.24	103.94	115.57	59.21
Merged-chr12-85596394-2	chr12	85596291	85596491	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	17.36	6.04	10.27	4.83	21.68	20.7	5.98	13.6	21.44	22.59	24.12	9.71
Merged-chr18-31634980-3	chr18	31634878	31635078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-150.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	331.52	353.65	371.37	431.96	817.39	892.43	751.04	898.85	479.53	501.1	712.52	333.32
Merged-chr12-78350959-3	chr12	78350852	78351052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172952, intron 2 of 23)	LSU-rRNA_Hsa|rRNA|rRNA	124297.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	124.37	153.18	130.63	127.1	43.77	55.82	42.85	0.0	34.03	39.67	33.16	61.71
Merged-chr10-8884566-3	chr10	8884452	8884652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	MIRb|SINE|MIR	1518.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	19.38	19.37	46.21	28.56	29.46	42.33	27.57	39.45	36.78	38.66	34.17	23.81
Merged-chr19-3321789-3	chr19	3321708	3321908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1493.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	37.96	31.19	22.25	22.93	32.73	30.1	18.6	33.31	28.72	32.64	38.19	22.56
Merged-chr7-80294347-3	chr7	80294259	80294459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285998)	promoter-TSS (NM_001285998)	-92.0	NM_145150	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	155.06	132.56	123.79	139.16	142.37	197.55	69.76	141.14	175.84	169.21	215.57	96.17
Merged-chr17-65783806-3	chr17	65783687	65783887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	CpG-6545	432.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	16.56	21.38	18.25	16.49	14.32	24.46	16.94	20.52	15.14	24.6	37.18	17.86
Merged-chr6-145746553-5	chr6	145746420	145746620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-61863.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	23.02	30.18	25.67	48.67	38.86	40.14	55.8	38.66	32.65	43.18	52.76	35.09
Merged-chr2-69206237-3	chr2	69206131	69206331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305800)	promoter-TSS (NM_001305800)	-18.0	NM_001199123	66442.0	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	112.66	113.69	180.26	133.53	162.0	167.13	110.95	211.99	150.66	133.56	184.91	107.14
Merged-chr6-108570531-3	chr6	108570426	108570626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52641.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	28.67	13.83	30.23	18.9	54.0	35.12	51.15	71.75	32.26	28.62	42.21	29.45
Merged-chr4-111721654-3	chr4	111721568	111721768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1658.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	41.59	29.68	46.21	37.0	58.09	35.43	36.21	58.46	69.63	48.2	87.93	39.78
Merged-chr18-62164495-4	chr18	62164448	62164648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER103C|DNA|hAT-Charlie	15433.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	14.54	18.11	18.25	16.09	9.82	21.64	16.61	9.53	19.67	18.58	8.54	15.98
Merged-chr4-102558072-3	chr4	102557964	102558164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-11996.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	38.36	22.39	47.35	60.33	30.27	28.54	15.94	32.75	26.36	22.59	69.34	30.39
Merged-chr3-121885071-3	chr3	121884946	121885146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68183.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	17.36	22.89	22.82	8.04	21.68	15.68	12.29	20.97	22.42	22.59	18.09	13.47
Merged-chr15-27665810-3	chr15	27665705	27665905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	15737.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	57.74	58.86	66.74	53.09	73.23	102.54	60.79	59.47	92.44	79.33	79.89	43.86
Merged-chr12-79168581-1	chr12	79168481	79168681	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	3877.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.4	0.5	0.57	0.0	46.64	36.69	19.6	25.43	0.0	0.0	0.0	0.0
Merged-chr4-124936994-3	chr4	124936906	124937106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177573)	promoter-TSS (NM_177573)	-42.0	NM_177573	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	97.72	93.82	126.07	96.53	93.28	121.67	70.09	93.73	139.45	111.47	128.64	70.8
Merged-chr9-108854603-3	chr9	108854506	108854706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	563.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	25.44	15.85	29.66	24.53	31.91	31.04	21.59	21.64	45.43	41.17	33.67	24.12
Merged-chr4-106881275-3	chr4	106881189	106881389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-30181.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	16.15	14.34	5.13	2.41	20.86	25.09	13.62	11.36	25.57	25.61	25.63	6.89
Merged-chr1-161520263-5	chr1	161520161	161520361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25604.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	53.7	20.37	30.8	35.8	37.64	36.37	41.19	46.21	31.67	31.13	36.18	15.98
Merged-chr8-104631389-3	chr8	104631269	104631469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-48.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	34.73	21.88	34.8	20.91	38.05	37.0	25.58	27.81	57.63	39.67	40.7	22.24
Merged-chr7-38018658-3	chr7	38018556	38018756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	896.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	23.42	29.43	35.37	17.29	23.32	22.26	15.61	23.55	45.04	39.16	55.27	30.07
Merged-chr6-117431534-4	chr6	117431415	117431615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63720.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	45.63	49.8	47.92	74.81	35.59	42.02	65.77	46.35	39.53	55.73	46.73	26.94
Merged-chr2-117914104-3	chr2	117914001	117914201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	92173.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	29.88	25.66	27.95	38.21	44.18	32.93	39.53	47.89	25.96	10.54	38.19	23.81
Merged-chr5-112355666-3	chr5	112355578	112355778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039228, exon 1 of 1)	exon (NM_001039228, exon 1 of 1)	355.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	31.09	14.34	22.82	24.53	31.09	12.54	34.88	40.43	31.67	20.08	25.12	26.31
Merged-chr15-100761731-3	chr15	100761635	100761835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021530)	promoter-TSS (NM_021530)	-12.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	41.19	26.66	29.09	33.38	31.5	35.75	21.92	29.27	47.4	46.7	45.22	26.0
Merged-chr6-39222722-3	chr6	39222609	39222809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-15936.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	55.72	50.56	53.05	53.49	72.82	42.96	46.17	76.85	55.86	62.26	62.31	39.78
Merged-chr11-84597779-3	chr11	84597671	84597871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72111.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	64.61	60.87	71.88	73.2	79.37	59.89	60.79	90.87	66.87	57.74	102.51	64.22
Merged-chr10-117063903-3	chr10	117063819	117064019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-67.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	121.54	116.96	118.65	128.3	142.37	136.72	76.07	104.08	202.0	163.69	217.57	117.79
Merged-chr18-60806700-3	chr18	60806606	60806806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2857.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	71.47	82.0	83.86	61.94	69.96	93.13	35.87	57.76	104.24	121.51	103.51	47.93
Merged-chr7-83616432-3	chr7	83616306	83616506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 18 of 22)	intron (NM_177695, intron 18 of 22)	-15611.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	67.03	58.1	92.41	84.86	63.82	71.18	80.05	104.38	76.71	64.77	112.56	43.54
Merged-chr9-66882594-3	chr9	66882517	66882717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37088.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	33.11	30.94	51.91	58.32	34.77	34.18	62.12	61.09	26.95	26.61	39.7	26.94
Merged-chr13-23746547-3	chr13	23746433	23746633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	-201.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	96.51	70.43	104.39	111.41	129.28	121.98	69.42	105.79	125.49	137.58	142.2	88.97
Merged-chr14-55735999-3	chr14	55735896	55736096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9688.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	50.88	49.05	88.42	67.97	66.68	46.72	67.1	68.75	58.22	46.19	86.93	57.95
Merged-chr11-3164559-2	chr11	3164473	3164673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 9 of 33)	exon (NM_030207, exon 9 of 33)	28890.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	33.11	21.38	31.95	33.78	47.87	43.59	32.88	40.46	0.2	1.0	1.0	1.25
Merged-chr9-110131967-3	chr9	110131850	110132050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009211)	promoter-TSS (NM_009211)	-74.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	78.74	81.75	98.69	89.29	88.78	120.41	67.43	98.58	151.25	160.67	176.87	91.79
Merged-chr17-33394686-3	chr17	33394585	33394785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009542)	promoter-TSS (NM_009542)	-48.0	NM_009542	22643.0	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	43.21	33.2	38.22	44.24	54.82	48.29	28.9	53.24	52.12	54.23	71.86	39.47
Merged-chr9-21453200-3	chr9	21453098	21453298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	28290.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	37.55	27.67	38.79	28.96	60.55	52.37	43.51	49.88	65.1	64.27	45.22	53.57
Merged-chr11-75460186-3	chr11	75460072	75460272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1367.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	13.33	14.34	18.25	2.82	18.41	23.2	20.59	22.65	18.29	26.61	29.14	19.11
Merged-chr14-18331803-3	chr14	18331706	18331906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009455)	promoter-TSS (NM_009455)	38.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	35.13	35.72	41.07	44.64	32.73	56.76	55.47	48.03	45.24	55.23	64.82	30.39
Merged-chr4-149326016-3	chr4	149325920	149326120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8619.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	17.77	19.12	21.68	23.73	19.64	43.9	19.93	22.43	28.32	34.14	30.65	20.68
Merged-chr18-75000582-3	chr18	75000467	75000667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028552).2	promoter-TSS (NR_028552).2	90.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	51.28	68.67	51.34	65.56	58.09	78.71	85.04	49.23	73.95	66.28	69.34	42.92
Merged-chr13-81741218-3	chr13	81741117	81741317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	29800.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	46.03	33.2	47.92	55.5	42.55	47.98	72.08	86.36	85.36	80.34	80.9	44.17
Merged-chr7-51862258-3	chr7	51862164	51862364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	3.0	NM_001115087	100040608.0	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	58.95	67.16	69.03	89.69	116.19	95.95	115.93	134.19	112.11	82.85	152.75	77.69
Merged-chr17-74454849-3	chr17	74454769	74454969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	4239.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	19.38	17.86	28.52	16.49	17.18	26.34	21.59	32.44	32.06	29.62	37.18	16.92
Merged-chr5-29993786-3	chr5	29993692	29993892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19322.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	33.52	34.21	22.25	27.35	15.96	29.48	17.94	17.19	37.57	39.67	38.69	14.1
Merged-chr2-116942546-3	chr2	116942428	116942628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42376.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	18.98	17.61	15.4	23.33	33.96	25.4	45.18	28.07	44.25	34.65	62.31	25.69
Merged-chr7-119896025-5	chr7	119895943	119896143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173408)	promoter-TSS (NM_173408)	182.0	NM_001285960	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	39.57	45.53	38.22	37.4	45.41	37.94	56.47	44.64	57.43	70.8	72.86	47.3
Merged-chr4-123014173-3	chr4	123014089	123014289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2404.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	39.17	32.2	16.54	15.28	24.55	20.7	20.26	13.63	33.83	28.62	39.7	17.86
Merged-chr2-158144927-1	chr2	158144827	158145027	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1465.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	11.71	7.29	16.54	9.25	17.59	21.32	17.61	9.95	17.51	12.55	28.14	13.47
Merged-chr1-170924700-3	chr1	170924592	170924792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160215, intron 1 of 4)	intron (NM_001160215, intron 1 of 4)	2891.0	NM_145141	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	28.27	15.59	24.53	32.58	25.77	27.59	18.27	31.82	36.58	33.64	38.19	20.68
Merged-chr5-31468003-3	chr5	31467900	31468100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360001, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	15564.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	50.07	39.49	61.61	69.58	65.46	55.19	50.16	84.73	54.09	47.7	91.45	57.64
Merged-chr13-12460633-3	chr13	12460555	12460755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	1083.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	46.44	67.41	54.19	41.02	74.87	86.23	52.48	60.67	92.64	95.4	69.85	44.17
Merged-chr3-54277368-2	chr3	54277281	54277481	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 4 of 11)	intron (NM_001253682, intron 4 of 11)	-83726.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	10.5	5.79	8.56	7.64	29.86	33.87	26.91	54.11	58.42	40.67	89.94	50.44
Merged-chr12-8498652-3	chr12	8498548	8498748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007483, exon 1 of 1)	3' UTR (NM_007483, exon 1 of 1)	1361.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	64.61	66.91	37.08	32.98	50.32	64.6	41.19	31.07	94.02	90.88	98.49	58.89
Merged-chr12-40585060-3	chr12	40584943	40585143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	138990.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	128.81	109.67	119.8	111.81	137.87	184.38	115.93	146.97	145.35	154.15	154.26	72.36
Merged-chr11-9404206-1	chr11	9404106	9404306	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 35 of 61)	intron (NM_178259, intron 35 of 61)	212264.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.23	1.01	4.56	4.02	1.64	3.14	6.98	11.16	3.54	4.02	5.53	1.57
Merged-chr18-23844765-3	chr18	23844658	23844858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	40788.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	29.07	26.41	41.64	30.16	16.36	21.32	30.89	39.31	47.6	39.16	44.22	20.68
Merged-chr17-86658019-1	chr17	86657919	86658119	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011104)	TTS (NM_011104)	-95845.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.02	1.01	0.0	0.8	22.09	18.81	19.93	13.29	2.95	9.54	5.53	3.13
Merged-chrX-134585585-3	chrX	134585462	134585662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019865)	promoter-TSS (NM_019865)	-92.0	NM_019865	19982.0	Mm.286408	NM_019865	ENSMUSG00000079435	Rpl36a	L44L|Rpl44	ribosomal protein L36A	protein-coding	79.14	70.68	57.05	94.92	99.82	99.09	76.73	86.58	78.28	60.75	91.45	62.03
Merged-chr18-88894238-3	chr18	88894141	88894341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018821)	promoter-TSS (NM_018821)	-34.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	76.72	64.14	81.0	84.06	108.0	110.06	79.72	108.34	103.85	123.52	188.43	63.91
Merged-chr6-119479339-3	chr6	119479258	119479458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-310.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	70.26	71.69	65.03	74.81	55.23	91.25	100.65	74.41	63.53	78.83	72.86	73.3
Merged-chr15-84192199-3	chr15	84192095	84192295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-38.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	88.84	60.87	97.55	88.48	137.46	118.84	87.03	100.29	150.47	110.97	158.28	91.47
Merged-chr8-13650858-1	chr8	13650758	13650958	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	26729.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.23	1.51	1.71	3.22	2.05	3.14	1.99	3.06	3.54	2.01	1.51	0.31
Merged-chr9-63384888-3	chr9	63384778	63384978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7026.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	44.01	46.28	27.95	30.57	52.37	73.38	26.24	50.92	54.88	47.7	46.23	35.71
Merged-chr9-21291369-3	chr9	21291274	21291474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009878)	promoter-TSS (NM_009878)	-165.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	335.15	323.21	347.98	377.67	348.56	446.53	318.55	405.0	337.52	442.86	473.84	251.55
Merged-chr2-45113094-3	chr2	45112999	45113199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110572, exon 3 of 3)	non-coding (NR_110572, exon 3 of 3)	153.0	NM_001355290	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	27.46	33.2	20.54	16.49	27.0	55.19	18.27	13.99	27.73	45.19	38.69	20.99
Merged-chr11-107469862-3	chr11	107469759	107469959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	CpG	861.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	20.59	18.11	18.83	22.93	27.0	26.65	18.6	18.17	28.72	20.59	35.17	20.36
Merged-chr7-5014786-3	chr7	5014698	5014898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-70.0	NM_001110328	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	98.12	106.4	98.12	94.52	77.73	107.56	74.74	66.67	116.83	137.07	122.1	99.31
Merged-chr7-141379741-3	chr7	141379640	141379840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12420.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	32.71	33.96	39.36	33.78	41.73	58.32	28.57	36.76	56.45	64.27	66.83	40.41
Merged-chr11-16969867-3	chr11	16969729	16969929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18419.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	57.34	57.85	66.17	54.7	62.18	90.62	59.79	64.96	77.69	61.76	80.4	18.8
Merged-chr4-120054354-3	chr4	120054257	120054457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-106849.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	21.8	13.58	21.11	44.24	32.32	31.98	23.92	34.99	43.07	29.12	36.18	35.4
Merged-chr11-86484534-3	chr11	86484443	86484643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-114.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	182.52	193.17	211.07	174.96	201.28	248.66	149.14	150.59	224.22	253.56	266.32	128.13
Merged-chr6-48537577-2	chr6	48537482	48537682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	13.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	27.46	26.66	36.51	41.02	55.64	59.58	29.23	47.8	1.97	2.01	1.0	1.25
Merged-chr10-52382532-3	chr10	52382418	52382618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-394.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	46.03	35.47	25.67	30.97	46.64	68.99	41.85	51.84	50.75	53.22	77.38	34.15
Merged-chr8-76902167-3	chr8	76902067	76902267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-341.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	138.5	130.54	187.11	176.16	278.6	306.67	285.0	380.16	222.45	252.06	293.95	149.11
Merged-chr19-5794142-3	chr19	5794018	5794218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1863.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	35.53	38.23	23.39	34.59	23.73	64.91	10.96	7.85	17.31	37.16	8.54	15.66
Merged-chr7-101949168-3	chr7	101949055	101949255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15298.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	16.56	20.37	26.81	23.33	13.5	19.13	13.29	11.02	36.39	32.13	21.61	21.3
Merged-chr13-6889651-3	chr13	6889566	6889766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-240895.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	42.8	46.53	65.03	71.59	110.05	108.81	76.4	37.6	95.98	85.36	135.17	74.24
Merged-chr6-145341948-3	chr6	145341868	145342068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45657.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	42.8	29.43	39.93	41.02	40.91	57.07	38.86	46.15	67.46	56.74	98.49	47.93
Merged-chrX-7574771-2	chrX	7574670	7574870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290574)	promoter-TSS (NM_001290574)	-489.0	NM_138605	54646.0	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	20.19	13.08	9.13	7.64	23.32	11.6	10.96	12.2	20.06	17.57	19.6	12.84
Merged-chr3-129429596-3	chr3	129429477	129429677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4096.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	38.76	30.43	41.07	46.66	50.73	63.66	39.86	84.39	51.53	40.67	44.72	39.78
Merged-chr6-47878033-1	chr6	47877933	47878133	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146175, intron 1 of 7)	CpG	478.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	12.52	7.04	15.4	7.64	22.09	10.35	14.28	14.13	9.44	7.53	15.07	5.95
Merged-chr10-67596831-3	chr10	67596758	67596958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24899.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	70.26	52.07	83.29	74.0	86.32	77.14	114.93	158.8	100.7	85.86	104.01	73.3
Merged-chr3-90323408-3	chr3	90323319	90323519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18235.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	65.41	61.37	64.46	56.31	64.23	69.61	67.43	82.21	89.69	65.78	76.88	42.92
Merged-chrX-159255723-3	chrX	159255633	159255833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148945)	promoter-TSS (NM_148945)	-49.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	100.55	76.46	106.68	86.47	102.28	111.63	81.71	103.49	103.65	85.36	160.29	78.32
Merged-chr10-120220175-3	chr10	120220063	120220263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026617, intron 3 of 6)	intron (NM_026617, intron 3 of 6)	-6897.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	44.82	52.82	49.06	43.84	76.5	79.96	67.76	78.11	72.38	90.88	118.08	50.44
Merged-chr11-61930330-3	chr11	61930225	61930425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-68.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	87.62	104.64	89.56	67.97	84.68	131.39	45.84	58.93	132.76	112.47	122.61	63.91
Merged-chr13-74260762-3	chr13	74260646	74260846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	31585.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	39.98	40.5	72.45	72.8	49.91	49.86	58.13	86.72	79.27	58.24	76.88	61.4
Merged-chr17-15774109-3	chr17	15774018	15774218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52468.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	30.28	16.35	16.54	21.72	25.77	20.7	12.95	35.27	44.25	17.57	40.2	20.36
Merged-chr9-15710286-3	chr9	15710194	15710394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	556.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	75.11	53.58	80.43	82.05	87.14	87.8	67.43	131.33	114.87	88.37	143.21	82.7
Merged-chr2-26902940-3	chr2	26902832	26903032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-45.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	56.94	64.39	61.61	58.72	80.59	87.17	41.52	53.75	86.94	106.45	80.9	63.59
Merged-chr9-14500541-3	chr9	14500452	14500652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	-67.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	172.42	164.5	180.26	169.73	190.23	190.03	142.17	214.37	257.07	222.93	280.89	155.38
Merged-chr18-47370415-1	chr18	47370315	47370515	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1545.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	4.44	3.27	1.71	0.8	4.91	14.11	1.66	11.89	4.13	4.02	4.52	5.64
Merged-chr5-92278194-3	chr5	92278103	92278303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	-22.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	84.39	74.7	52.48	103.37	85.91	72.75	68.1	76.21	62.94	42.18	105.02	68.61
Merged-chr17-84095307-3	chr17	84095214	84095414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	16654.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	29.88	24.9	49.63	35.8	65.46	36.06	31.22	57.79	39.14	41.17	63.82	31.95
Merged-chr10-84338937-3	chr10	84338835	84339035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101536.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	106.6	97.34	147.75	129.51	108.41	120.41	99.32	161.19	108.77	88.87	142.2	61.09
Merged-chr11-114917288-2	chr11	114917178	114917378	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17108.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	5.25	3.27	7.99	0.8	38.86	40.76	37.87	50.44	27.73	14.56	39.19	27.88
Merged-chr14-31160681-3	chr14	31160594	31160794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138672, intron 11 of 68)	intron (NM_138672, intron 11 of 68)	7947.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	99.74	103.38	88.42	83.26	120.28	155.85	105.63	111.67	131.58	109.46	174.36	65.16
Merged-chr19-5489197-3	chr19	5489095	5489295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-816.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	106.6	73.45	108.96	87.68	81.82	109.12	41.85	63.87	112.9	136.57	135.67	68.29
Merged-chr9-65565038-3	chr9	65564916	65565116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	RMER15|LTR|ERVL	15071.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	44.82	34.71	61.04	51.48	78.96	62.71	62.12	74.89	45.43	53.22	59.29	49.81
Merged-chr14-61774377-3	chr14	61774277	61774477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92004.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	23.02	23.9	19.97	39.82	33.55	33.24	37.87	42.84	33.44	28.62	33.16	22.87
Merged-chr6-94500338-3	chr6	94500235	94500435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026255)	promoter-TSS (NM_026255)	21.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	46.03	20.88	27.38	39.42	47.87	44.84	29.56	46.68	48.19	55.73	72.86	60.77
Merged-chr7-47051966-3	chr7	47051861	47052061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1321.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	91.66	91.56	92.41	139.56	101.87	118.84	107.62	135.28	150.27	129.04	160.79	80.51
Merged-chr10-85185263-3	chr10	85185140	85185340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-186.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	107.41	126.77	79.86	123.48	132.96	143.62	116.26	91.43	141.62	182.26	147.23	128.13
Merged-chr6-125165666-3	chr6	125165558	125165758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008084, exon 1 of 7)	5' UTR (NM_008084, exon 1 of 7)	115.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	117.91	159.47	119.23	136.75	132.55	148.95	83.71	126.84	196.1	170.21	233.15	119.98
Merged-chr2-14249949-3	chr2	14249839	14250039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 4 of 29)	(GA)n|Simple_repeat|Simple_repeat	-11064.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	50.07	32.2	31.95	33.38	30.27	28.54	36.21	43.57	32.06	39.16	26.63	24.75
Merged-chr8-124663319-3	chr8	124663213	124663413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	56.0	NM_175149	69551.0	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	40.38	40.5	44.5	28.96	37.23	40.45	32.55	35.69	50.35	67.28	94.97	41.66
Merged-chr7-64279723-3	chr7	64279601	64279801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-7969.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	86.01	82.5	100.4	132.32	114.55	99.72	64.77	117.9	96.18	102.43	130.14	67.67
Merged-chr3-159839681-3	chr3	159839565	159839765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026582)	promoter-TSS (NM_026582)	15.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	13.33	12.83	22.25	17.7	25.77	30.1	15.28	25.96	22.42	18.58	20.1	14.72
Merged-chr3-61363802-3	chr3	61363706	61363906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-701.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	190.59	177.83	199.09	254.59	219.69	225.77	184.35	208.29	231.5	236.99	324.6	169.16
Merged-chr1-161528344-3	chr1	161528245	161528445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33688.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	16.96	20.37	7.99	17.7	15.14	29.16	21.59	18.0	26.16	30.13	23.62	6.89
Merged-chr13-18785917-1	chr13	18785817	18786017	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	68625.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.57	0.0	0.82	0.63	0.0	0.56	25.37	35.65	30.65	20.05
Merged-chr13-20794098-3	chr13	20794012	20794212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281854)	promoter-TSS (NM_001281854)	-1.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	50.88	44.77	61.04	52.69	51.55	69.61	57.13	50.22	74.94	56.24	74.87	27.57
Merged-chr17-80139011-3	chr17	80138937	80139137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	11566.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	24.23	15.34	42.21	23.73	22.5	21.64	37.54	44.69	27.14	19.58	33.67	27.25
Merged-chr8-123236265-3	chr8	123236162	123236362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357300)	promoter-TSS (NM_001357300)	-4.0	NM_030176	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	21.8	19.37	22.82	15.28	35.18	37.63	24.25	24.17	37.17	25.11	48.24	19.74
Merged-chr1-153899887-3	chr1	153899777	153899977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106194)	promoter-TSS (NR_106194)	-49.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	132.44	159.47	125.5	130.31	132.96	154.59	92.68	112.54	175.05	176.74	180.39	111.84
Merged-chrX-38373331-3	chrX	38373219	38373419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57197.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	17.36	16.85	22.82	30.97	28.23	38.57	22.59	18.39	31.08	32.13	42.21	19.42
Merged-chr9-57765159-3	chr9	57765093	57765293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007713, exon 1 of 13)	exon (NM_007713, exon 1 of 13)	667.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	63.4	60.87	65.03	74.0	67.09	84.66	40.52	54.67	87.53	95.4	121.6	83.33
Merged-chr10-34113484-3	chr10	34113392	34113592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	14480.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	32.71	32.45	23.96	43.04	41.73	52.37	59.79	32.89	34.62	40.67	46.73	25.37
Merged-chr18-61555191-3	chr18	61555093	61555293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146087)	promoter-TSS (NM_146087)	-80.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	160.71	141.11	167.14	121.87	152.6	185.95	98.99	139.49	221.47	208.88	221.09	117.79
Merged-chr2-129380389-3	chr2	129380296	129380496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-9257.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	48.46	38.74	62.18	53.49	48.68	72.44	49.49	60.73	77.69	71.8	77.88	44.8
Merged-chr10-58406076-3	chr10	58405967	58406167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359116, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	11694.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	48.46	35.21	37.08	59.53	54.41	52.99	40.52	57.56	64.91	66.28	70.85	41.98
Merged-chr14-70618253-3	chr14	70618120	70618320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360025, intron 2 of 15)	CpG	349.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	13.33	16.6	4.56	19.31	20.05	17.87	21.92	19.85	16.13	19.08	21.61	12.84
Merged-chr14-49066509-3	chr14	49066401	49066601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-48.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	87.22	96.34	91.27	98.14	87.14	117.59	72.41	113.66	97.56	114.98	125.12	72.99
Merged-chr1-105981049-3	chr1	105980932	105981132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	9250.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	77.53	63.13	78.15	84.86	76.5	89.37	87.03	107.89	87.72	104.94	117.08	76.44
Merged-chr5-93205427-3	chr5	93205323	93205523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1072.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	33.11	40.5	38.79	14.88	47.87	76.51	31.56	49.23	64.71	65.78	44.72	42.29
Merged-chr13-4942701-1	chr13	4942601	4942801	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333537.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	1.26	0.0	0.0	0.0	0.0	0.0	0.25	26.55	30.63	29.65	18.48
Merged-chr5-64381010-3	chr5	64380949	64381149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	86893.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	59.76	94.07	54.76	65.56	112.5	119.16	87.36	85.54	74.74	81.34	80.9	43.86
Merged-chr5-64241443-3	chr5	64241347	64241547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11090.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	75.51	59.86	63.32	81.24	67.5	79.33	74.74	97.18	70.81	95.9	102.0	59.52
Merged-chr11-80176028-3	chr11	80175929	80176129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-7843.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.46	6.54	22.25	23.73	28.23	24.15	9.97	20.5	21.83	22.09	24.62	19.74
Merged-chr13-34253753-3	chr13	34253645	34253845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90781.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	41.19	32.95	63.32	78.43	58.5	37.94	66.43	62.36	38.94	21.09	50.25	30.39
Merged-chr10-81571768-3	chr10	81571703	81571903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3484.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	74.3	70.68	107.82	65.96	116.59	92.82	71.08	113.92	104.83	100.42	111.05	53.26
Merged-chr6-113661234-3	chr6	113661105	113661305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	22738.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	25.04	13.83	31.95	20.11	22.09	26.34	22.59	24.11	27.34	16.57	27.13	11.28
Merged-chr5-140649140-3	chr5	140649045	140649245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175274)	promoter-TSS (NM_175274)	-114.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	90.45	86.78	70.17	88.08	120.69	139.23	64.11	86.27	147.52	127.53	177.88	75.81
Merged-chr6-72159959-3	chr6	72159856	72160056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36759.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	35.94	21.38	39.36	26.55	48.68	52.37	48.16	46.63	31.08	44.69	55.78	22.24
Merged-chr13-115900385-2	chr13	115900243	115900443	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	409345.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	2.42	3.02	5.13	3.22	42.14	43.27	37.54	33.76	39.53	24.1	32.66	17.54
Merged-chr15-73090823-3	chr15	73090778	73090978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053068, intron 1 of 2)	CpG	466.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	139.71	151.92	183.69	154.04	189.41	210.41	152.13	187.57	208.49	207.87	286.92	127.19
Merged-chr2-34783214-2	chr2	34783099	34783299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	11109.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	24.63	31.44	1.14	1.61	9.82	40.45	0.66	0.45	16.92	22.09	4.02	3.76
Merged-chr12-69296769-3	chr12	69296660	69296860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	79.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	32.71	24.15	27.95	39.42	44.18	46.41	37.87	45.2	44.25	38.66	44.72	29.76
Merged-chr1-179803818-3	chr1	179803733	179803933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026375, exon 1 of 36)	5' UTR (NM_026375, exon 1 of 36)	182.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	179.69	187.64	153.45	178.98	213.14	255.25	154.79	192.51	189.61	188.79	248.23	106.2
Merged-chr3-116508161-3	chr3	116508049	116508249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025517)	promoter-TSS (NM_025517)	26.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	100.95	65.9	82.72	91.3	116.59	107.56	95.67	100.43	109.36	114.48	146.22	95.55
Merged-chr11-31803647-1	chr11	31803547	31803747	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20900.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	6.06	4.28	5.7	6.03	15.55	17.56	13.95	20.97	4.52	11.05	8.54	6.58
Merged-chr15-76701450-3	chr15	76701349	76701549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-93.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	41.99	32.7	31.38	33.38	55.64	67.1	33.22	37.71	78.87	44.19	73.36	39.78
Merged-chr17-24414578-3	chr17	24414493	24414693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-53.0	NM_001357626	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	122.75	123.75	127.21	112.62	99.0	129.19	57.8	79.93	128.63	148.62	135.17	91.79
Merged-chr2-11429763-3	chr2	11429651	11429851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31251.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	180.5	184.62	191.67	205.93	220.51	250.86	234.84	243.56	281.26	316.83	355.76	174.8
Merged-chr6-122819890-3	chr6	122819790	122819990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021899)	promoter-TSS (NM_021899)	-294.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	20.59	17.36	24.53	12.07	28.64	24.46	16.28	20.36	46.62	38.16	44.22	21.93
Merged-chr17-87405749-3	chr17	87405603	87405803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22038.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	93.68	136.33	142.61	150.42	128.87	140.48	104.63	130.82	165.41	189.8	196.97	109.64
Merged-chr4-84884361-3	chr4	84884258	84884458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177385)	promoter-TSS (NM_177385)	49.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	115.89	104.13	102.11	138.76	135.0	151.77	103.31	182.24	135.32	123.52	195.97	96.49
Merged-chr7-101649068-3	chr7	101648978	101649178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14690.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	24.23	28.42	44.5	34.19	27.41	25.71	19.93	30.62	25.37	24.1	32.66	18.48
Merged-chr19-6941503-3	chr19	6941500	6941700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007522)	promoter-TSS (NM_007522)	-93.0	NM_001177362	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	38.36	26.41	22.82	28.15	35.59	36.69	15.28	27.5	36.19	50.21	37.18	21.3
Merged-chr6-122604483-3	chr6	122604387	122604587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008108)	TTS (NM_008108)	-2043.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	43.21	22.39	48.49	47.86	50.73	54.88	32.22	40.54	62.74	70.29	70.85	37.59
Merged-chr17-50157544-3	chr17	50157449	50157649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32948.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	88.84	91.05	123.79	74.81	70.37	109.12	85.37	92.94	128.04	83.85	125.62	55.76
Merged-chr1-64737861-3	chr1	64737779	64737979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-129.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	147.39	151.92	181.98	175.36	228.69	213.23	179.04	215.27	246.06	181.26	321.59	156.32
Merged-chr16-35903186-3	chr16	35903094	35903294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31812.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	18.17	22.39	24.53	24.13	30.27	31.36	18.27	22.57	48.39	53.22	39.7	34.46
Merged-chr18-5986006-3	chr18	5985908	5986108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150090.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	25.44	21.88	19.4	31.37	24.55	32.3	15.94	20.36	20.65	12.05	19.09	25.37
Merged-chr8-13595016-3	chr8	13594913	13595113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32552.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	89.24	89.29	106.1	150.02	110.05	105.36	132.54	151.74	137.88	113.98	162.3	111.21
Merged-chr5-64923139-3	chr5	64923029	64923229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9570.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	37.55	38.74	75.3	34.99	49.91	56.44	65.44	57.93	35.99	27.11	34.17	25.06
Merged-chr8-71463661-3	chr8	71463545	71463745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022419)	promoter-TSS (NM_022419)	12.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	59.36	40.24	46.78	50.27	76.09	74.94	48.83	51.73	86.94	71.3	90.45	45.74
Merged-chr17-57011462-3	chr17	57011357	57011557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133801)	promoter-TSS (NM_133801)	-169.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	123.16	119.73	82.72	88.08	115.37	163.69	104.3	110.86	161.28	179.75	124.62	94.29
Merged-chr2-131258916-3	chr2	131258802	131259002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3106.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	28.67	35.21	60.47	33.38	42.14	35.75	26.57	25.01	57.43	65.27	79.89	36.97
Merged-chr1-135659684-2	chr1	135659590	135659790	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60373.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.81	0.5	0.0	8.04	132.14	105.99	94.34	133.63	62.94	72.3	95.97	68.61
Merged-chr2-51934970-3	chr2	51934930	51935130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141982)	promoter-TSS (NM_001141982)	133.0	NM_030243	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	37.96	30.18	43.93	40.22	50.32	37.63	28.9	41.94	48.58	33.14	57.79	30.7
Merged-chr14-121985700-3	chr14	121985587	121985787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-20494.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	33.52	20.88	61.61	41.43	39.27	22.58	19.93	45.95	38.55	26.11	25.12	11.9
Merged-chr18-9790971-1	chr18	9790871	9791071	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	MTD|LTR|ERVL-MaLR	83323.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.04	5.28	6.28	10.46	16.77	6.9	4.98	10.54	2.16	3.01	1.0	1.57
Merged-chr12-33083596-3	chr12	33083491	33083691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 2 of 19)	intron (NM_001024478, intron 2 of 19)	9284.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	19.38	21.88	21.68	26.14	36.41	28.22	26.91	30.76	25.37	24.6	31.15	16.6
Merged-chr6-145342961-3	chr6	145342862	145343062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-44663.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	39.17	25.91	38.22	35.8	40.09	36.37	43.85	51.65	57.24	39.16	54.27	28.19
Merged-chr9-14842590-3	chr9	14842506	14842706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17604.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	27.05	19.87	54.76	46.25	54.0	55.5	48.83	61.12	45.24	45.69	89.44	32.58
Merged-chr16-87455376-1	chr16	87455276	87455476	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024258, intron 1 of 17)	CpG	391.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	39.98	48.29	19.4	20.51	33.96	58.64	26.24	21.28	83.79	62.76	53.77	38.22
Merged-chr6-90462534-3	chr6	90462443	90462643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-33.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	59.36	57.1	55.9	46.25	51.14	50.8	41.19	65.5	81.82	66.78	83.91	31.01
Merged-chr16-95797363-3	chr16	95797248	95797448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94941.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	38.36	32.7	73.59	41.83	38.86	46.1	56.14	65.55	68.25	51.21	105.02	36.65
Merged-chr11-104550239-1	chr11	104550139	104550339	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	381.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	21.4	15.34	7.42	5.23	5.32	15.99	14.28	12.87	17.9	29.12	23.11	21.93
Merged-chr14-40937312-3	chr14	40937213	40937413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10896.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	54.51	33.45	48.49	49.87	51.55	41.08	36.87	72.87	47.6	52.72	52.76	42.29
Merged-chr12-3686697-3	chr12	3686580	3686780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	113696.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	52.09	35.97	53.62	39.82	34.36	56.76	53.48	52.26	47.4	46.19	65.83	28.19
Merged-chr10-80398953-3	chr10	80398857	80399057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306143, intron 1 of 6)	CpG	574.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	130.83	117.97	112.95	104.57	130.09	180.3	94.67	117.39	163.05	168.21	173.36	112.78
Merged-chr14-14633331-3	chr14	14633236	14633436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69689.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	48.86	65.9	51.34	29.36	50.32	90.31	34.55	23.07	78.87	137.07	63.31	32.58
Merged-chr3-109031698-1	chr3	109031598	109031798	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4091.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.81	0.25	0.0	0.4	4.5	2.51	11.29	6.79	1.77	2.51	0.5	4.7
Merged-chr3-83885344-3	chr3	83885222	83885422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43714.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	53.7	32.45	67.88	70.79	162.0	172.15	222.55	166.49	134.73	142.1	238.68	110.58
Merged-chr19-5388777-3	chr19	5388697	5388897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016882)	promoter-TSS (NM_016882)	-94.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	58.55	62.88	65.6	46.66	90.41	86.23	40.19	67.6	95.2	83.85	83.91	52.63
Merged-chr5-48372380-3	chr5	48372285	48372485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	-7.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	62.99	65.4	78.72	90.9	101.05	84.98	61.45	99.53	93.23	103.43	135.17	70.17
Merged-chr17-71526979-3	chr17	71526879	71527079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023294)	promoter-TSS (NM_023294)	-122.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	110.64	131.05	122.65	146.0	124.37	186.26	135.19	136.91	153.61	162.18	192.95	102.44
Merged-chr4-155891777-3	chr4	155891678	155891878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	-16.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	46.84	30.43	27.38	24.13	38.05	39.82	19.27	29.86	53.5	44.19	47.23	27.25
Merged-chr17-34411324-1	chr17	34411224	34411424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163855, intron 1 of 23)	intron (NM_001163855, intron 1 of 23)	12504.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	13.73	9.81	3.99	8.45	4.09	5.96	1.99	2.72	9.05	16.57	3.01	5.64
Merged-chr16-5011832-3	chr16	5011740	5011940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133185, intron 4 of 10)	intron (NM_133185, intron 4 of 10)	1713.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	47.65	36.22	54.76	49.07	45.82	45.15	41.85	60.48	62.74	50.21	47.23	43.23
Merged-chr8-94377194-3	chr8	94377079	94377279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9250.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	74.3	91.05	131.21	79.23	65.87	87.17	58.79	78.08	81.63	70.29	97.98	45.74
Merged-chr13-113486651-3	chr13	113486559	113486759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	16185.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	139.31	107.91	167.71	161.28	154.64	148.95	155.79	188.75	168.76	138.08	218.08	106.51
Merged-chr4-103313785-3	chr4	103313692	103313892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-54.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	99.33	93.57	121.51	117.84	112.91	98.78	111.28	126.9	119.98	124.02	144.21	51.38
Merged-chr11-120041947-3	chr11	120041867	120042067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-186.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	77.53	89.04	94.13	129.51	109.64	132.33	103.97	154.15	136.89	99.92	169.84	88.03
Merged-chr13-109261981-3	chr13	109261863	109262063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-62781.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	60.57	68.67	88.42	103.37	74.87	84.35	122.9	113.47	102.87	65.78	106.02	63.91
Merged-chr19-10279865-3	chr19	10279769	10279969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25008.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	143.75	111.43	124.36	109.0	134.6	174.97	124.9	127.85	147.32	129.54	149.74	93.35
Merged-chr17-64592486-3	chr17	64592379	64592579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9170.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	81.16	79.73	95.84	100.55	105.96	121.98	124.56	111.2	139.45	138.08	109.54	80.82
Merged-chr3-27690286-3	chr3	27690198	27690398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	20154.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	92.47	61.88	106.1	86.47	78.14	86.23	70.42	104.94	120.77	100.42	101.5	60.46
Merged-chr18-70472415-3	chr18	70472326	70472526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	-28.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	59.36	58.35	58.19	58.72	92.05	112.57	64.11	88.57	105.23	85.36	133.66	69.23
Merged-chr8-10006601-3	chr8	10006511	10006711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-22.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	100.95	134.82	192.24	128.7	119.05	186.89	93.01	116.02	204.75	193.31	189.44	90.85
Merged-chr7-114079522-3	chr7	114079424	114079624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	38257.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	18.98	24.15	30.8	25.34	27.41	24.15	31.56	34.65	35.8	43.18	56.78	31.01
Merged-chr14-31336618-3	chr14	31336526	31336726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360187)	promoter-TSS (NM_001360187)	-12.0	NM_001360187	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	118.72	138.84	156.88	138.36	146.05	183.13	120.58	134.75	179.18	171.72	180.39	101.19
Merged-chr17-64617989-3	chr17	64617884	64618084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16335.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	18.57	12.83	33.09	36.6	36.0	19.76	30.56	50.1	29.5	19.58	21.61	15.04
Merged-chr16-87664081-3	chr16	87663974	87664174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34880.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	50.88	55.34	51.34	60.33	74.87	62.09	42.52	79.85	85.56	75.32	84.42	33.21
Merged-chr10-121586825-3	chr10	121586699	121586899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-5.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	163.54	162.74	139.76	127.5	137.46	206.02	141.84	148.23	240.75	193.81	247.22	134.7
Merged-chr18-61726315-3	chr18	61726217	61726417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	14.0	NM_021296	17714.0	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	64.61	63.39	45.07	57.92	86.73	83.1	49.16	73.43	101.29	96.91	119.59	60.46
Merged-chr9-65542352-3	chr9	65542212	65542412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	37775.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	131.23	104.89	137.48	166.11	107.19	171.21	102.31	116.38	158.14	156.15	183.41	109.96
Merged-chr15-83149123-3	chr15	83149002	83149202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004432)	promoter-TSS (NR_004432)	276.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	49.26	46.28	37.65	29.76	44.18	58.01	53.48	33.87	59.2	62.26	94.97	53.57
Merged-chr3-105910650-3	chr3	105910549	105910749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	6228.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	18.57	29.93	27.38	24.13	32.32	30.1	22.92	31.99	34.22	34.65	53.26	23.49
Merged-chr14-63122642-3	chr14	63122528	63122728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	CpG	166.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	125.58	135.07	168.28	126.69	146.05	169.33	139.18	155.92	169.55	184.27	237.17	144.42
Merged-chr9-66946379-2	chr9	66946282	66946482	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361106)	promoter-TSS (NM_001361106)	-31.0	NM_001361106	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	31.9	18.36	16.54	19.31	24.14	35.75	18.93	17.55	26.75	26.61	35.17	23.18
Merged-chr5-108629179-2	chr5	108629078	108629278	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028223)	promoter-TSS (NM_028223)	599.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	9.29	16.85	13.69	17.7	16.36	22.58	29.9	14.38	17.31	19.08	18.09	20.99
Merged-chr19-5572947-3	chr19	5572855	5573055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4931.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	16.96	16.1	17.68	16.49	18.0	28.54	22.92	22.99	19.67	21.59	22.61	12.53
Merged-chr2-156857505-3	chr2	156857423	156857623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015591, intron 1 of 2)	intron (NR_015591, intron 1 of 2)	5422.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	22.21	11.07	42.21	29.76	32.32	27.59	17.61	32.61	24.98	31.13	44.22	23.49
Merged-chr4-11156355-3	chr4	11156260	11156460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021897)	promoter-TSS (NM_021897)	-81.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	138.91	125.51	116.94	167.72	205.78	191.91	156.78	195.0	220.29	180.26	266.82	122.8
Merged-chr9-114805239-4	chr9	114805091	114805291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-23198.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	20.59	13.08	24.53	21.32	63.82	77.45	60.12	71.19	68.64	65.27	57.28	28.51
Merged-chr11-79528186-3	chr11	79528075	79528275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033711, exon 2 of 2)	5' UTR (NM_001033711, exon 2 of 2)	2434.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	94.49	64.89	92.41	102.16	93.68	125.74	67.43	87.81	75.53	84.35	103.51	51.38
Merged-chr14-50834701-1	chr14	50834601	50834801	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 41 of 54)	RLTR12B|LTR|ERVK	26785.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.42	4.28	5.13	7.64	15.96	13.48	15.94	12.56	24.98	29.12	25.12	22.24
Merged-chr16-36697823-1	chr16	36697723	36697923	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	3845.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.81	3.02	0.0	5.63	6.14	2.2	12.29	8.92	4.72	5.52	7.03	2.19
Merged-chr9-21220690-3	chr9	21220600	21220800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18632.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	50.88	53.58	48.49	67.57	70.37	68.67	38.86	60.03	85.36	67.78	89.44	48.87
Merged-chr15-82016266-3	chr15	82016164	82016364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134095)	promoter-TSS (NM_134095)	-44.0	NM_001356541	28075.0	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	133.25	92.31	119.8	114.63	121.09	142.68	63.78	107.94	163.25	177.75	138.69	88.03
Merged-chrX-100626002-3	chrX	100625894	100626094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028303)	promoter-TSS (NM_028303)	-53.0	NM_001356384	72621.0	Mm.291607	NM_028303	ENSMUSG00000015668	Pdzd11	1810012H22Rik|2310079D11Rik|2700099C19Rik|AI854765|Pdzk11	PDZ domain containing 11	protein-coding	68.65	55.59	64.46	72.4	106.78	80.27	49.83	100.23	86.15	97.41	128.13	59.21
Merged-chr2-32982146-3	chr2	32982033	32982233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-50.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	108.62	90.55	122.65	111.41	107.19	158.98	91.68	134.97	142.01	127.03	187.93	108.08
Merged-chr13-98925664-3	chr13	98925559	98925759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	725.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	43.61	39.74	33.09	36.2	29.05	47.66	31.56	35.07	48.78	56.74	43.72	33.83
Merged-chrX-74368667-3	chrX	74368576	74368776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145405)	promoter-TSS (NM_145405)	-128.0	NM_145405	27643.0	Mm.3979	NM_145405	ENSMUSG00000015290	Ubl4a	DXHXS254E|DXS254E|DXS254Eh|Gdx|Ubl4	ubiquitin-like 4A	protein-coding	29.88	29.68	29.09	34.99	20.46	28.54	37.87	26.44	20.06	27.62	26.13	14.41
Merged-chr11-114884896-3	chr11	114884798	114884998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	63.4	49.05	59.9	61.54	76.09	76.2	49.16	62.36	73.76	57.74	71.86	39.16
Merged-chr4-132529490-3	chr4	132529407	132529607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5907.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	26.65	29.93	45.07	34.59	31.09	44.84	50.49	32.41	49.37	54.73	41.2	22.87
Merged-chr19-34231776-1	chr19	34231676	34231876	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360720)	promoter-TSS (NM_001360720)	-849.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.08	5.53	7.42	8.45	8.59	3.45	2.33	13.01	9.24	7.53	8.04	2.82
Merged-chr6-21959121-3	chr6	21959051	21959251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9536.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	41.59	35.47	49.06	41.02	63.41	57.07	54.14	96.03	70.41	76.82	69.85	53.57
Merged-chr2-103796043-3	chr2	103795938	103796138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	1040.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	19.79	26.66	11.98	21.32	25.77	28.85	31.56	24.28	33.44	36.65	52.26	23.18
Merged-chr10-80160012-3	chr10	80159897	80160097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	CpG	-7842.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	241.87	243.98	241.3	267.06	222.14	282.53	161.44	209.72	304.08	352.98	332.14	183.26
Merged-chr7-16874353-3	chr7	16874245	16874445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	541.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	32.3	31.44	32.52	26.55	24.96	37.0	23.92	25.35	51.93	47.7	37.18	27.25
Merged-chr5-139366039-3	chr5	139365942	139366142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	3703.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	90.05	62.13	103.82	76.02	78.96	68.36	79.39	101.92	91.66	86.86	81.9	63.91
Merged-chr3-101800024-3	chr3	101799931	101800131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36192.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	24.23	25.66	33.66	30.16	45.82	32.93	33.88	39.56	31.67	22.59	61.3	19.74
Merged-chr6-72538912-3	chr6	72538806	72539006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5485.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	28.27	21.88	47.92	37.0	31.5	27.91	31.89	46.51	57.43	61.26	111.55	39.16
Merged-chr15-9428076-3	chr15	9427968	9428168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7960.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	50.47	49.05	51.34	57.11	52.77	59.58	70.09	85.93	70.41	72.3	79.39	53.88
Merged-chr13-56135527-3	chr13	56135430	56135630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159514)	promoter-TSS (NM_001159514)	20.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	48.05	50.05	42.21	45.05	47.46	47.98	33.22	36.31	73.17	68.29	99.49	55.76
Merged-chr10-94360903-3	chr10	94360793	94360993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	L1M4|LINE|L1	48944.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	25.04	21.63	8.56	14.08	20.05	41.08	20.59	19.04	31.47	22.09	26.13	6.89
Merged-chr8-119839787-3	chr8	119839685	119839885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	794.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	28.27	41.25	37.08	43.44	20.86	54.56	28.9	41.5	83.99	60.75	99.49	47.3
Merged-chr17-71179058-3	chr17	71178971	71179171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-4461.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	42.8	36.47	55.33	44.64	51.96	45.15	56.14	63.22	48.98	32.64	53.77	21.62
Merged-chr15-44427529-3	chr15	44427442	44427642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-569.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	24.63	30.94	20.54	44.64	29.46	36.69	40.19	42.39	41.89	35.65	38.69	20.68
Merged-chr10-117792804-3	chr10	117792683	117792883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-78.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	163.13	170.28	174.56	158.06	155.05	212.92	109.62	126.98	231.31	249.55	236.17	149.74
Merged-chr2-11778508-3	chr2	11778404	11778604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	751.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	76.72	66.91	83.29	75.21	92.05	118.53	79.06	114.81	135.71	137.58	147.23	60.46
Merged-chr15-50696121-3	chr15	50695997	50696197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	192952.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	50.47	38.74	34.23	29.76	49.5	92.19	35.87	35.5	41.3	30.63	43.72	22.56
Merged-chr3-36552594-3	chr3	36552493	36552693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-13.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	37.55	35.72	38.79	42.63	63.41	47.35	32.88	64.99	73.76	65.78	63.31	47.3
Merged-chr5-103692297-3	chr5	103692199	103692399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-36567.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	76.32	83.0	75.3	88.89	70.77	70.87	52.82	71.86	98.74	107.45	158.28	79.57
Merged-chr1-131911449-1	chr1	131911349	131911549	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	991.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	7.67	15.09	20.54	16.09	17.18	10.98	13.95	14.1	25.96	27.11	28.14	14.1
Merged-chr9-40455583-5	chr9	40455505	40455705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172768, exon 1 of 20)	exon (NM_172768, exon 1 of 20)	159.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	18.57	22.13	18.25	15.69	13.09	10.03	11.29	12.0	10.03	11.55	9.55	11.9
Merged-chr17-7430519-3	chr17	7430407	7430607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45202.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	54.92	59.86	61.04	51.88	65.05	90.0	47.5	39.65	99.92	110.46	114.57	76.44
Merged-chr9-66832632-3	chr9	66832536	66832736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	2070.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	78.34	69.17	82.15	90.09	52.77	79.65	42.85	47.83	91.66	72.81	70.85	48.24
Merged-chr16-76370251-3	chr16	76370152	76370352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2797.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	24.63	22.13	33.09	33.38	34.77	31.67	14.62	28.49	42.29	32.13	48.24	30.07
Merged-chr8-36815042-3	chr8	36814935	36815135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-81981.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	36.34	14.84	46.21	67.17	67.09	41.39	61.78	67.4	60.97	47.2	77.88	35.4
Merged-chr5-139384795-3	chr5	139384732	139384932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	4193.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	56.13	43.26	81.0	65.56	74.87	70.87	83.71	99.51	61.76	61.26	96.98	52.94
Merged-chr13-75788399-3	chr13	75788288	75788488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51497.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	25.04	19.62	27.38	24.13	40.5	38.57	23.58	47.38	51.53	35.15	52.76	15.04
Merged-chr1-152612893-3	chr1	152612801	152613001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	12316.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	29.48	22.64	42.21	32.18	32.32	18.5	37.87	49.01	25.37	32.64	34.17	21.3
Merged-chr6-86371462-3	chr6	86371319	86371519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-121.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	65.82	49.05	42.78	37.0	78.55	84.66	42.85	43.26	67.66	75.82	85.92	40.41
Merged-chr15-12008267-3	chr15	12008138	12008338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-12231.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	37.15	13.83	39.36	32.18	16.36	23.2	10.96	20.07	27.14	15.06	36.18	16.92
Merged-chr10-50763170-3	chr10	50763067	50763267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-132484.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	19.38	26.41	37.65	15.69	31.09	37.94	31.22	34.07	60.58	36.15	45.73	21.3
Merged-chr11-121451908-3	chr11	121451799	121451999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-50.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	56.94	73.95	46.21	51.08	54.82	80.27	32.22	44.02	75.13	76.82	61.3	41.98
Merged-chr17-5570457-3	chr17	5570349	5570549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77849.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	51.28	18.36	70.17	60.73	65.87	58.95	86.36	115.68	74.15	64.27	138.18	77.38
Merged-chr4-63410772-3	chr4	63410690	63410890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7345.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	46.84	49.05	57.05	44.24	45.82	99.72	33.22	66.53	71.99	80.34	97.48	45.42
Merged-chr10-53881401-3	chr10	53881320	53881520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130511.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	36.75	17.36	37.08	39.01	27.41	30.42	35.54	53.07	20.46	14.56	19.6	16.6
Merged-chr13-113617787-1	chr13	113617687	113617887	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	777.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	21.8	22.89	39.36	19.71	20.86	40.45	31.56	17.47	32.26	28.62	29.65	12.22
Merged-chr10-77537817-1	chr10	77537717	77537917	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7469.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.46	4.78	11.98	6.03	6.14	4.7	9.63	10.43	5.7	11.05	6.03	1.88
Merged-chr3-55829016-3	chr3	55828917	55829117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-18088.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	30.69	26.66	53.62	44.64	27.0	41.08	27.24	58.15	43.07	38.66	71.86	33.21
Merged-chr18-57826570-1	chr18	57826470	57826670	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34237.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	0.0	2.77	2.28	7.24	1.64	0.63	5.31	7.68	0.0	1.0	0.0	2.51
Merged-chr15-30610832-3	chr15	30610744	30610944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-428282.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	153.04	162.49	191.67	211.15	107.59	117.59	102.31	143.5	191.97	163.69	220.09	137.84
Merged-chr15-103486828-3	chr15	103486725	103486925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153505, exon 25 of 31)	exon (NM_153505, exon 25 of 31)	-16209.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	22.21	24.15	29.09	32.58	46.23	33.55	38.2	34.82	27.14	35.65	33.67	16.92
Merged-chr9-63716350-3	chr9	63716256	63716456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	41638.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	65.01	59.36	59.33	53.09	81.82	101.28	62.78	63.06	94.21	89.88	105.02	52.63
Merged-chr2-172398180-3	chr2	172398067	172398267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	4373.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	16.15	16.85	17.11	22.52	40.09	40.45	24.91	35.72	33.83	59.25	54.27	27.25
Merged-chr15-84982087-3	chr15	84982007	84982207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	5864.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	35.53	37.48	50.77	32.98	35.59	35.12	23.92	54.93	50.16	40.17	46.23	34.15
Merged-chr11-61267263-3	chr11	61267143	61267343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007437)	promoter-TSS (NM_007437)	-57.0	NM_007437	11671.0	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	99.74	77.72	83.86	68.78	134.19	124.8	57.47	105.48	117.23	84.86	95.97	79.26
Merged-chr16-22095957-3	chr16	22095870	22096070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	67329.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	21.8	16.1	24.53	21.32	34.77	35.43	34.88	37.74	27.54	19.08	29.14	23.81
Merged-chr5-121848951-3	chr5	121848848	121849048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-49.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	50.88	64.39	40.5	38.61	58.09	84.35	19.27	38.1	58.81	62.76	54.27	26.94
Merged-chr2-145822147-3	chr2	145822049	145822249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	36033.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	164.34	150.92	160.3	147.21	143.6	188.14	128.88	145.94	175.25	206.37	204.01	119.04
Merged-chr11-29705406-3	chr11	29705316	29705516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	11642.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	47.24	38.74	54.76	69.58	53.18	59.27	58.13	80.08	59.01	73.81	49.75	24.75
Merged-chr1-16571125-3	chr1	16570996	16571196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073122, exon 5 of 5)	non-coding (NR_073122, exon 5 of 5)	48242.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	35.13	16.85	25.67	28.56	27.82	34.18	52.15	63.67	50.94	28.12	32.16	29.76
Merged-chr9-44965636-3	chr9	44965527	44965727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346698)	promoter-TSS (NM_001346698)	-27.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	71.07	74.7	67.88	49.47	76.5	95.95	29.23	57.79	94.8	88.37	81.4	53.57
Merged-chr10-62792361-3	chr10	62792259	62792459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	9.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	131.64	148.4	161.44	146.8	141.96	192.85	109.95	138.17	175.05	175.23	172.35	128.75
Merged-chr16-91685718-3	chr16	91685614	91685814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3014.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	95.3	88.03	99.26	107.39	123.14	129.82	72.08	86.3	105.03	126.03	129.64	57.95
Merged-chr10-51451753-3	chr10	51451672	51451872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28840.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	23.82	14.59	17.11	18.1	27.41	19.13	25.24	34.4	29.11	40.67	24.12	15.35
Merged-chr10-84440737-3	chr10	84440650	84440850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-279.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	62.18	48.8	47.92	59.53	72.82	53.93	38.2	64.82	48.98	58.75	65.32	44.48
Merged-chr2-166906412-3	chr2	166906307	166906507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023565, intron 1 of 24)	CpG	311.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	86.41	73.95	100.4	75.61	96.55	99.72	53.15	78.03	146.73	151.13	128.64	88.65
Merged-chr14-27187010-4	chr14	27186907	27187107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	RSINE1|SINE|B4	43014.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	31.5	33.45	32.52	26.14	30.27	30.1	27.9	35.3	29.31	35.65	25.12	22.56
Merged-chr5-99382944-3	chr5	99382853	99383053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-130026.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	60.57	59.36	71.31	71.19	75.68	113.83	82.38	92.02	85.17	94.9	107.53	70.8
Merged-chr12-72844386-3	chr12	72844285	72844485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73380.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	173.63	158.71	173.42	169.33	163.23	169.02	152.8	198.73	237.8	195.32	258.28	137.21
Merged-chr13-25020334-3	chr13	25020245	25020445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013389)	promoter-TSS (NM_001013389)	-28.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	69.86	60.12	95.84	90.09	96.96	86.23	47.17	105.79	79.46	86.86	129.64	62.03
Merged-chr6-120453372-3	chr6	120453262	120453462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9835.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	18.57	31.44	37.65	22.52	62.59	54.56	85.04	89.78	71.4	66.28	68.84	53.88
Merged-chr14-117625503-3	chr14	117625412	117625612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	328335.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	41.59	66.91	76.44	68.78	61.77	82.78	66.1	82.82	90.67	74.81	124.62	46.99
Merged-chr5-139409576-3	chr5	139409469	139409669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3182.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	23.02	10.56	33.09	31.77	29.05	27.28	47.5	85.54	29.11	31.13	28.64	39.78
Merged-chr18-46280686-4	chr18	46280528	46280728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172627, intron 1 of 8)	CpG	222.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	12.92	16.35	17.68	20.11	17.59	21.64	26.57	23.44	17.9	33.14	25.12	22.87
Merged-chr10-39171296-3	chr10	39171185	39171385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7491.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	56.13	48.29	36.51	37.0	42.55	59.58	19.93	39.45	44.84	55.73	44.22	25.37
Merged-chr2-127080113-3	chr2	127079994	127080194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 1 of 7)	MTD|LTR|ERVL-MaLR	9437.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	35.94	40.75	54.19	32.58	42.96	49.86	30.23	35.1	57.83	60.75	52.76	34.77
Merged-chr2-30828332-3	chr2	30828167	30828367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133346)	promoter-TSS (NM_133346)	33.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	54.51	56.09	82.72	47.06	66.68	68.99	23.25	44.64	63.92	67.28	63.82	38.85
Merged-chr18-60733535-3	chr18	60733440	60733640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-399.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	22.21	23.14	29.66	34.19	56.05	43.9	32.22	43.63	52.52	69.29	43.72	23.81
Merged-chr2-37431282-3	chr2	37431179	37431379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-360.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	25.04	25.15	16.54	25.34	31.5	25.09	23.92	21.73	17.7	31.13	24.62	17.54
Merged-chr2-23040363-3	chr2	23040241	23040441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331044)	promoter-TSS (NM_001331044)	-100.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	136.89	129.03	98.69	113.02	116.59	149.26	99.98	93.45	164.82	181.26	153.76	98.99
Merged-chr12-99480575-3	chr12	99480493	99480693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-30519.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	26.25	21.88	27.38	14.88	25.36	37.0	9.3	13.21	31.67	26.11	28.64	13.78
Merged-chr17-36023788-3	chr17	36023688	36023888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3228.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	34.32	37.48	29.09	19.31	20.05	22.89	10.3	23.33	38.75	19.08	34.67	24.43
Merged-chr5-24383639-3	chr5	24383563	24383763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001002897)	TTS (NM_001002897)	8480.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	62.18	48.54	62.18	59.12	94.09	81.53	34.55	55.29	85.17	54.73	82.41	53.88
Merged-chr10-13008396-3	chr10	13008295	13008495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175102)	promoter-TSS (NM_175102)	-55.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	137.69	143.37	129.49	150.82	148.1	185.01	94.34	175.51	221.08	161.68	265.31	109.96
Merged-chr8-25009817-3	chr8	25009710	25009910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	7112.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	21.0	30.18	38.79	33.38	23.73	39.82	20.59	38.5	48.58	63.27	49.24	35.4
Merged-chrX-151803816-2	chrX	151803703	151803903	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021523, intron 1 of 82)	CpG	521.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	16.56	11.82	10.84	14.88	10.23	19.13	16.94	15.45	25.96	19.58	28.14	17.54
Merged-chr10-81070016-3	chr10	81069920	81070120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-63.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	189.38	157.96	187.68	123.88	216.42	246.15	112.27	161.58	233.08	244.53	229.63	149.43
Merged-chr14-19416164-3	chr14	19416066	19416266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	186421.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	67.84	62.88	59.9	58.32	55.23	37.32	74.41	53.19	54.09	64.27	64.82	74.24
Merged-chr5-65698658-1	chr5	65698558	65698758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-802.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	19.38	20.37	26.81	23.73	9.41	19.76	9.63	24.2	17.31	9.54	19.6	11.59
Merged-chr13-101523789-3	chr13	101523689	101523889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-126209.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	30.28	28.67	65.6	39.01	47.05	43.27	39.86	48.17	52.91	38.66	63.31	26.31
Merged-chr8-69996537-3	chr8	69996426	69996626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145596)	promoter-TSS (NM_145596)	-142.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	342.82	340.82	419.86	392.95	328.92	407.64	354.09	370.6	411.08	487.54	570.82	310.45
Merged-chr10-78476956-3	chr10	78476870	78477070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12022.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	40.78	39.49	62.18	35.8	56.87	49.54	38.86	73.77	59.01	47.2	51.76	31.01
Merged-chr10-127121226-3	chr10	127121111	127121311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171026)	promoter-TSS (NM_001171026)	-51.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	121.14	140.1	107.25	128.7	119.46	139.85	80.05	109.07	152.63	156.15	137.68	72.05
Merged-chr17-34198383-3	chr17	34198284	34198484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010724, exon 1 of 6)	5' UTR (NM_010724, exon 1 of 6)	189.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	27.46	41.5	40.5	30.97	36.82	34.18	16.94	27.39	38.16	36.65	41.71	21.3
Merged-chr1-88008420-3	chr1	88008325	88008525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033291, intron 1 of 27)	CpG	126.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	14.54	26.41	18.83	30.16	14.73	19.13	29.9	21.76	16.52	19.08	18.59	10.34
Merged-chr2-116953529-3	chr2	116953459	116953659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53407.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	55.72	34.71	25.67	20.91	41.73	75.88	48.5	27.39	57.63	53.22	60.8	25.06
Merged-chr2-25180640-3	chr2	25180528	25180728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-130.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	57.74	65.15	57.62	37.81	69.55	107.87	50.49	60.9	93.62	77.83	105.52	43.23
Merged-chr6-39418105-3	chr6	39418011	39418211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	1665.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	69.05	47.29	63.89	50.68	87.55	95.33	46.17	48.42	58.61	73.81	76.38	29.45
Merged-chr2-29935392-3	chr2	29935291	29935491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028923)	promoter-TSS (NM_028923)	-18.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	113.47	68.42	78.15	57.11	79.37	115.39	53.15	63.25	116.05	103.43	70.35	52.32
Merged-chr4-138972868-3	chr4	138972763	138972963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029857)	promoter-TSS (NM_029857)	-42.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	19.79	19.37	19.4	16.49	29.46	24.15	15.94	22.79	37.57	30.13	30.15	23.81
Merged-chr2-93823733-3	chr2	93823655	93823855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_001355076	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	56.53	53.32	44.5	51.48	66.27	66.16	39.2	57.36	69.43	69.79	66.33	46.99
Merged-chr2-150909726-3	chr2	150909607	150909807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163476, exon 1 of 5)	5' UTR (NM_001163476, exon 1 of 5)	113.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	123.16	122.24	136.91	136.35	93.28	139.23	138.52	129.37	139.45	136.07	174.36	102.75
Merged-chr1-24699520-3	chr1	24699419	24699619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	20601.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	38.76	32.95	53.62	36.6	101.05	148.32	98.65	213.51	50.16	29.62	87.93	30.39
Merged-chr11-54860715-3	chr11	54860597	54860797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	-106.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	164.75	168.78	152.31	160.08	168.14	155.22	128.55	128.13	178.79	184.27	183.91	95.23
Merged-chr12-85474044-3	chr12	85473918	85474118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010234, exon 1 of 4)	5' UTR (NM_010234, exon 1 of 4)	128.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	217.24	212.04	217.91	189.03	177.55	262.77	128.22	123.51	259.82	270.13	320.58	169.79
Merged-chr7-38271410-3	chr7	38271260	38271460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025390)	promoter-TSS (NM_025390)	-12.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	33.11	29.18	26.81	22.52	33.14	41.39	23.58	40.71	35.21	40.17	57.28	24.12
Merged-chr17-37270955-3	chr17	37270864	37271064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	730.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	45.63	37.23	51.34	33.78	55.23	44.21	43.18	39.14	59.79	57.24	57.28	38.22
Merged-chr1-131245238-3	chr1	131245134	131245334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-56.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	28.67	32.45	23.96	26.14	25.77	27.28	26.91	36.03	42.68	22.59	57.79	20.68
Merged-chr15-38470611-3	chr15	38470536	38470736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19911.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	120.73	148.9	128.35	162.49	123.96	159.61	161.1	146.55	187.05	206.37	215.06	126.87
Merged-chr6-82044685-2	chr6	82044585	82044785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3057.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	23.02	19.62	45.64	41.02	21.27	18.5	24.58	46.65	2.36	3.01	1.51	1.25
Merged-chr12-52307794-3	chr12	52307700	52307900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	172809.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	56.53	38.48	45.07	54.7	62.59	54.25	75.73	98.3	88.12	63.27	148.23	70.48
Merged-chr14-87415943-3	chr14	87415841	87416041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-642.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	105.39	112.18	91.84	118.25	128.46	124.49	107.29	154.71	159.71	139.08	211.04	109.02
Merged-chr13-98997228-3	chr13	98997124	98997324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12659.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	44.01	33.45	43.93	34.99	42.14	55.5	34.21	52.88	71.59	48.2	62.31	32.89
Merged-chr17-21532629-1	chr17	21532529	21532729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_131123, intron 2 of 2)	CpG	-2910.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	16.56	27.67	26.81	18.1	15.14	20.38	23.58	24.11	23.41	13.56	17.59	14.72
Merged-chr1-184614911-3	chr1	184614808	184615008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57217.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	73.89	64.64	80.43	81.65	81.41	76.83	45.84	60.45	75.92	75.32	72.36	53.88
Merged-chr7-133053033-3	chr7	133052932	133053132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	28828.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	82.37	91.56	140.9	83.26	88.78	105.05	71.42	99.51	98.15	103.43	137.18	69.86
Merged-chr2-160645841-3	chr2	160645736	160645936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-61.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	222.09	252.53	214.49	204.32	235.64	319.84	202.96	197.24	339.29	389.13	373.85	223.67
Merged-chr19-23246749-3	chr19	23246660	23246860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252684, intron 8 of 24)	L2|LINE|L2	25839.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	77.12	82.25	96.41	87.68	67.09	80.59	85.37	101.69	127.85	96.91	110.55	63.91
Merged-chr4-155086442-3	chr4	155086340	155086540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026395)	promoter-TSS (NM_026395)	-137.0	NM_001081100	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	204.32	187.14	212.21	164.9	240.14	236.75	140.18	182.58	237.4	186.78	228.13	137.21
Merged-chr1-35810738-3	chr1	35810637	35810837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-257663.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	37.15	22.13	38.22	59.12	37.23	66.79	40.19	51.39	57.04	40.67	65.32	34.46
Merged-chr5-110058148-3	chr5	110058053	110058253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41816.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	39.57	51.31	59.9	68.37	44.18	55.82	56.14	65.1	51.93	49.21	85.42	44.48
Merged-chr4-117887353-3	chr4	117887240	117887440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033617)	promoter-TSS (NM_033617)	-11.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	61.78	44.52	42.21	45.85	72.41	65.22	25.24	56.24	93.62	95.9	126.12	70.48
Merged-chr6-57769263-3	chr6	57769147	57769347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	55878.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	108.22	85.27	158.59	170.53	184.1	136.4	164.09	162.87	201.61	154.15	236.17	133.45
Merged-chr1-51907897-3	chr1	51907797	51907997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	8081.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	47.24	43.51	49.06	46.25	51.55	66.48	49.16	73.82	69.23	71.3	79.39	39.78
Merged-chr4-137593901-5	chr4	137593805	137594005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347227)	promoter-TSS (NM_001347227)	-267.0	NM_001347227	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	36.75	34.21	21.11	29.36	27.41	31.67	23.92	21.03	44.25	46.19	29.14	45.42
Merged-chr3-144698149-3	chr3	144698060	144698260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	22175.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	62.18	64.64	86.14	76.82	59.73	83.41	66.77	81.11	112.51	79.83	126.12	61.4
Merged-chr14-64186048-3	chr14	64185993	64186193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81770.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	60.57	64.64	77.58	80.04	63.0	75.26	70.75	79.46	85.76	78.33	89.44	43.86
Merged-chr8-71592118-3	chr8	71592036	71592236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-48.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	95.3	93.57	98.69	83.66	116.19	106.93	82.05	104.52	150.07	117.99	120.09	72.36
Merged-chr18-11657784-3	chr18	11657697	11657897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 1 of 18)	CpG	448.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	48.86	67.66	55.9	49.87	56.46	62.71	42.52	62.58	83.4	88.37	90.95	48.24
Merged-chr5-112287317-4	chr5	112287248	112287448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	10657.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	12.11	11.07	11.41	20.11	18.0	10.35	11.63	15.36	24.19	16.07	13.06	22.56
Merged-chr6-146079435-3	chr6	146079358	146079558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	145336.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	33.52	33.7	46.21	54.7	52.77	66.79	42.85	69.73	68.25	37.66	83.41	39.78
Merged-chr14-46993398-1	chr14	46993298	46993498	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-7942.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.46	3.52	2.85	6.84	6.55	5.02	5.98	11.58	8.46	5.02	5.02	2.82
Merged-chr12-98265825-3	chr12	98265710	98265910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2825.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	60.17	33.45	91.27	47.46	68.32	56.13	71.42	79.88	65.1	75.32	79.89	43.86
Merged-chrX-57053681-3	chrX	57053594	57053794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029371)	promoter-TSS (NM_029371)	124.0	NM_028242	72459.0	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	63.4	60.62	37.08	47.86	54.0	68.05	75.73	59.92	61.56	76.32	61.81	53.57
Merged-chr5-120612686-1	chr5	120612586	120612786	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-97.0	NM_133908	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	36.34	55.08	59.9	53.09	53.18	79.33	42.85	41.58	68.64	82.85	75.87	68.61
Merged-chr15-53343308-3	chr15	53343145	53343345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2938.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	65.41	67.66	61.61	82.85	51.14	76.83	68.1	82.4	83.79	66.78	96.48	48.56
Merged-chr14-55788880-3	chr14	55788803	55789003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019955)	promoter-TSS (NM_019955)	-46.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	37.55	36.22	33.66	32.58	50.32	61.77	25.91	41.86	42.88	51.21	38.69	24.43
Merged-chr18-34954754-3	chr18	34954663	34954863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-412.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	144.16	132.05	122.08	110.2	145.64	192.85	75.4	119.97	154.01	168.21	176.37	95.86
Merged-chr16-78217891-3	chr16	78217807	78218007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37547.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	107.41	124.25	109.53	92.91	53.59	66.79	45.84	56.22	75.72	53.73	74.87	29.13
Merged-chr10-13553140-3	chr10	13553051	13553251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347361)	promoter-TSS (NM_001347361)	-9.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	59.36	39.24	48.49	47.86	59.73	73.69	38.86	65.92	71.2	64.27	106.53	44.48
Merged-chr15-8099254-3	chr15	8099151	8099351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081402)	promoter-TSS (NM_001081402)	-42.0	NM_001081402	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	112.26	90.55	70.74	81.24	98.59	104.11	58.46	79.32	140.63	127.03	155.27	78.94
Merged-chr2-167802784-3	chr2	167802670	167802870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111593.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	42.4	29.43	119.23	109.8	103.09	66.79	104.3	138.95	85.95	36.15	158.78	72.36
Merged-chr3-35754011-3	chr3	35753926	35754126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029570)	promoter-TSS (NM_029570)	-37.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	48.05	56.59	53.62	48.26	94.91	75.57	52.15	73.29	81.82	72.81	100.5	38.85
Merged-chr15-77800711-3	chr15	77800604	77800804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41471.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	138.91	95.58	105.53	96.13	129.69	136.72	91.68	124.88	160.89	154.15	204.01	101.19
Merged-chr11-51817966-3	chr11	51817869	51818069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39512.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	47.24	35.97	50.2	32.18	41.32	52.05	28.9	39.11	49.96	55.23	49.75	34.46
Merged-chr12-86947299-3	chr12	86947200	86947400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289432)	promoter-TSS (NM_001289432)	-43.0	NM_173735	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	183.32	172.3	177.41	172.14	158.32	215.74	180.37	181.51	208.88	220.93	314.55	135.02
Merged-chr3-95668173-3	chr3	95668084	95668284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9463.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	36.75	29.68	29.66	19.31	38.05	42.96	31.56	36.08	54.48	60.25	66.33	29.13
Merged-chr7-118699036-3	chr7	118698912	118699112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	6726.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	18.57	10.82	24.53	14.08	24.96	28.22	51.82	58.63	42.48	28.12	64.32	38.85
Merged-chr19-6061237-3	chr19	6061147	6061347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013859)	promoter-TSS (NM_013859)	40.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	44.01	40.24	34.23	37.81	41.73	60.21	31.22	33.06	54.29	62.76	41.71	30.39
Merged-chr16-23272334-3	chr16	23272204	23272404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18166.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	93.28	75.46	115.8	79.64	108.0	109.12	65.77	89.36	121.36	103.43	128.13	60.77
Merged-chr7-90426452-3	chr7	90426351	90426551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	139.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	107.81	96.34	83.86	102.56	137.05	120.41	75.4	140.24	119.19	88.37	137.18	57.01
Merged-chr10-67271848-3	chr10	67271761	67271961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036293, intron 2 of 3)	intron (NM_001036293, intron 2 of 3)	13420.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	49.67	46.53	79.86	57.92	45.82	44.53	46.5	66.73	35.21	25.11	46.23	33.21
Merged-chr14-59341402-3	chr14	59341290	59341490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164327)	promoter-TSS (NM_001164327)	-60.0	NM_001164327	236451.0	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	36.34	34.71	49.06	52.69	44.18	57.38	40.52	40.15	74.94	42.18	75.87	51.06
Merged-chr7-34168497-3	chr7	34168351	34168551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016682)	promoter-TSS (NM_016682)	78.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	31.09	53.83	43.35	47.06	36.0	50.49	52.82	39.11	45.63	67.78	49.24	40.1
Merged-chr19-44389780-1	chr19	44389680	44389880	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17929.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.62	2.01	7.99	8.04	8.59	21.95	28.23	32.89	9.05	2.01	5.53	9.08
Merged-chr5-65108356-3	chr5	65108269	65108469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347355, intron 1 of 10)	intron (NM_001347355, intron 1 of 10)	801.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	31.9	34.71	47.92	32.98	35.18	29.79	25.91	38.58	43.86	29.62	47.74	24.75
Merged-chr3-89393789-3	chr3	89393695	89393895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-417.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	135.68	114.19	134.06	131.92	153.0	158.35	108.62	137.33	180.95	176.74	270.34	107.76
Merged-chrX-108834455-3	chrX	108834346	108834546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015493)	promoter-TSS (NR_015493)	-32.0	NR_015493	69964.0	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	87.22	82.0	98.69	102.16	82.23	84.04	93.34	106.68	110.74	107.45	148.73	75.5
Merged-chr8-77435198-3	chr8	77435112	77435312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-81844.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	124.77	107.91	147.18	113.82	105.14	122.92	97.99	69.98	145.75	145.61	160.79	68.61
Merged-chr9-65885095-3	chr9	65884990	65885190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170907)	promoter-TSS (NM_001170907)	83.0	NM_001170907	56404.0	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	39.57	17.61	45.07	41.43	56.46	35.75	27.57	38.16	37.37	29.12	62.31	26.63
Merged-chr4-149710712-3	chr4	149710608	149710808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9079.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	77.93	80.24	87.28	74.41	82.64	103.17	55.14	90.0	95.79	72.81	112.05	61.4
Merged-chr2-26237449-3	chr2	26237287	26237487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	12.0	NM_153559	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	32.71	29.18	36.51	30.57	58.09	52.99	28.23	35.61	55.66	59.75	53.77	32.58
Merged-chr13-20187861-3	chr13	20187752	20187952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	97345.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	29.88	30.94	32.52	36.2	15.96	37.63	25.91	24.53	27.34	28.12	31.15	12.22
Merged-chr7-28386178-3	chr7	28386067	28386267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6523.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	185.75	209.77	164.29	187.02	236.87	243.96	198.31	152.8	272.02	290.72	267.82	143.16
Merged-chr9-61965705-3	chr9	61965570	61965770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18871.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	26.65	34.96	34.23	47.86	39.68	37.32	45.84	47.66	39.14	46.19	46.23	21.3
Merged-chrX-109191596-3	chrX	109191490	109191690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5166.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	76.32	77.22	87.28	91.3	78.14	90.94	83.37	112.99	67.07	85.86	93.46	52.63
Merged-chr12-3221285-3	chr12	3221188	3221388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-14503.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	55.32	35.97	57.62	55.5	76.5	101.91	77.4	21.34	78.09	76.82	90.95	59.83
Merged-chr6-72616799-3	chr6	72616695	72616895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-47.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	123.97	116.71	91.27	101.35	123.96	180.3	78.72	109.29	147.52	136.07	185.92	93.98
Merged-chr17-83267698-3	chr17	83267579	83267779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52396.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	153.85	133.31	131.78	133.53	167.32	143.3	109.62	179.86	175.25	146.61	203.0	108.39
Merged-chr3-90433621-3	chr3	90433554	90433754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145540)	promoter-TSS (NM_145540)	-18.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	196.65	221.34	228.18	238.1	272.87	244.27	220.56	214.12	243.5	301.26	366.81	181.69
Merged-chr4-40143369-3	chr4	40143269	40143469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007386, exon 1 of 21)	5' UTR (NM_007386, exon 1 of 21)	104.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	204.72	179.34	208.22	235.69	227.05	275.32	197.31	248.36	293.26	286.2	378.87	168.22
Merged-chr1-106815523-3	chr1	106815471	106815671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18846.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	50.07	60.62	77.58	79.23	55.64	68.36	42.52	87.73	61.37	61.26	65.83	37.91
Merged-chr10-93589626-3	chr10	93589521	93589721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027246)	promoter-TSS (NM_027246)	37.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	50.47	70.43	51.91	51.88	70.77	62.71	52.15	17.66	45.63	61.76	46.23	31.95
Merged-chr9-35305451-3	chr9	35305351	35305551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	24346.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	1049.06	956.31	934.41	873.58	1218.31	643.45	1420.7	1639.21	1088.87	1266.81	1016.52	1557.25
Merged-chr12-86819362-3	chr12	86819265	86819465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65449.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	64.2	80.99	85.0	58.32	72.82	112.89	55.47	39.84	115.65	117.49	127.13	56.7
Merged-chr17-10982342-3	chr17	10982245	10982445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	141986.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	32.71	23.9	38.79	39.01	27.82	40.76	30.23	62.72	36.19	30.63	46.23	36.97
Merged-chr3-51183725-3	chr3	51183624	51183824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-40723.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	31.09	22.39	44.5	55.1	52.77	38.26	48.83	57.36	55.86	47.2	83.91	45.11
Merged-chr1-13012819-1	chr1	13012719	13012919	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21684.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.0	0.75	1.14	2.41	4.09	4.39	3.32	5.72	18.49	1.51	28.14	11.9
Merged-chr8-70594297-3	chr8	70594209	70594409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023627)	promoter-TSS (NM_023627)	-172.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	72.68	76.21	59.9	62.74	88.78	127.94	101.98	90.2	73.76	68.29	84.92	50.75
Merged-chr10-96015953-3	chr10	96015843	96016043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 13 of 28)	intron (NM_001001932, intron 13 of 28)	75280.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	58.15	43.77	59.9	77.62	88.37	98.15	47.17	77.55	81.43	69.79	78.89	43.86
Merged-chr17-65772693-3	chr17	65772592	65772792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133685)	promoter-TSS (NM_133685)	60.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	50.88	30.43	46.78	22.93	31.91	40.45	26.91	51.65	42.68	44.19	75.87	36.97
Merged-chrX-169320468-3	chrX	169320380	169320580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331049)	promoter-TSS (NM_001331049)	85.0	NM_001361166	101055907.0		NM_001361166		Gm15246	-	predicted gene 15246	protein-coding	163.94	159.22	147.18	193.86	185.73	191.59	154.13	225.03	220.49	219.42	334.65	135.33
Merged-chr1-13589423-3	chr1	13589317	13589517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028173, intron 1 of 10)	CpG	493.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	27.86	16.35	35.37	23.33	27.82	42.65	32.55	53.47	77.1	76.32	113.56	53.88
Merged-chr10-78465072-3	chr10	78464988	78465188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-140.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	207.55	214.8	241.87	251.78	281.87	269.36	186.35	239.8	290.7	245.53	352.24	180.75
Merged-chr1-128722237-3	chr1	128722175	128722375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129976.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	172.42	194.18	172.85	185.82	180.41	240.51	197.97	169.88	231.31	228.96	265.81	145.67
Merged-chr13-3537971-3	chr13	3537884	3538084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-91.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	224.91	205.0	221.91	212.76	255.69	251.8	205.95	214.94	248.61	247.54	306.01	132.2
Merged-chr4-43560516-3	chr4	43560415	43560615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2068.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	68.65	59.86	90.13	102.56	71.59	72.44	65.44	92.69	94.21	67.78	91.45	62.97
Merged-chr7-4792861-3	chr7	4792739	4792939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-126.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	123.97	91.3	111.81	79.23	102.28	117.59	67.1	73.51	133.94	136.07	163.81	74.24
Merged-chr12-31499746-5	chr12	31499623	31499823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134048)	promoter-TSS (NM_134048)	-107.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	33.11	48.04	45.07	45.05	38.05	54.88	65.11	51.7	45.04	57.24	51.76	52.0
Merged-chr14-77343927-3	chr14	77343816	77344016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	162952.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	90.05	89.8	145.47	130.71	81.0	109.44	71.08	124.18	137.48	88.87	122.1	75.18
Merged-chr11-53774816-3	chr11	53774711	53774911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159393, intron 7 of 9)	intron (NM_001159393, intron 7 of 9)	4338.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	27.86	17.1	18.25	18.9	28.23	23.83	21.59	20.3	41.3	33.14	24.62	15.35
Merged-chr14-121372023-3	chr14	121371909	121372109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	7221.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	16.56	19.62	29.66	29.36	31.91	24.15	28.57	46.91	16.52	29.62	44.22	19.42
Merged-chr5-140379395-3	chr5	140379291	140379491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	9917.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	46.44	47.29	57.05	55.5	47.87	31.98	27.57	50.97	40.91	45.19	52.26	27.88
Merged-chr11-101979581-3	chr11	101979471	101979671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5220.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	26.65	28.42	22.82	33.38	47.87	46.1	22.26	38.78	54.29	37.16	49.75	33.52
Merged-chr6-38434863-3	chr6	38434764	38434964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177185, intron 1 of 16)	CpG	939.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	24.23	26.41	29.09	22.93	34.36	30.42	17.94	28.26	44.25	28.62	27.64	29.13
Merged-chr17-6782763-3	chr17	6782659	6782859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	21.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	65.01	72.69	54.19	73.6	62.59	86.86	45.18	57.53	78.28	72.3	93.96	33.21
Merged-chr7-19002950-3	chr7	19002857	19003057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1108.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	29.88	22.13	23.39	19.31	31.09	27.28	13.95	23.22	40.12	41.17	29.14	21.3
Merged-chr11-106716796-3	chr11	106716699	106716899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1518.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	49.26	39.99	48.49	35.8	84.68	70.87	68.43	57.84	83.79	79.83	68.84	43.23
Merged-chr4-151044812-3	chr4	151044717	151044917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-152.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	165.96	162.99	144.9	132.73	190.64	228.59	145.82	163.88	231.11	233.98	286.92	130.95
Merged-chr18-79622470-3	chr18	79622366	79622566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-424429.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	21.4	27.67	29.09	27.35	22.09	22.89	31.89	39.7	28.52	22.09	43.72	27.25
Merged-chr4-45012528-3	chr4	45012434	45012634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-122.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	279.83	289.51	266.4	261.83	321.56	377.86	228.53	317.89	387.87	503.11	495.95	252.81
Merged-chr3-127787321-3	chr3	127787273	127787473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2499.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	55.32	26.66	59.33	46.25	53.18	40.45	50.16	51.67	39.14	42.68	38.19	17.54
Merged-chr12-33578113-1	chr12	33578013	33578213	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	148489.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	2.83	2.77	5.7	2.41	2.45	2.2	8.3	7.43	5.9	5.02	6.53	1.25
Merged-chr6-38346016-3	chr6	38345892	38346092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	8611.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	31.09	50.05	29.66	26.14	34.77	67.73	19.27	29.83	50.94	48.2	40.7	20.99
Merged-chr2-152105506-3	chr2	152105408	152105608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-16.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	77.12	69.67	74.16	80.04	99.41	102.22	78.06	78.17	93.62	98.91	104.01	52.94
Merged-chr1-182489926-3	chr1	182489818	182490018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 6 of 20)	intron (NM_009794, intron 6 of 20)	27692.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	77.93	69.42	86.14	72.8	81.0	73.69	36.54	94.18	82.22	92.39	118.08	45.42
Merged-chr9-27030689-3	chr9	27030599	27030799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	524.0	NM_178113	78658.0	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	54.11	78.23	65.03	69.98	77.73	92.82	55.14	89.33	113.88	114.48	145.22	67.67
Merged-chr10-84441274-3	chr10	84441165	84441365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-794.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	30.69	16.85	20.54	10.86	22.5	35.43	18.6	12.34	24.59	24.1	28.64	14.41
Merged-chr1-171827871-3	chr1	171827762	171827962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11835.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	93.68	79.99	120.94	79.23	89.59	111.32	57.13	74.27	100.51	94.9	121.1	50.75
Merged-chr13-22028868-3	chr13	22028774	22028974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6769.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	60.97	68.16	74.16	59.53	28.64	53.93	34.88	55.07	60.38	62.76	61.81	45.11
Merged-chr2-112448271-3	chr2	112448176	112448376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-6749.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	29.88	23.39	35.94	26.95	46.64	32.61	32.55	36.45	38.16	35.15	60.3	19.42
Merged-chr2-29965452-3	chr2	29965337	29965537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309460)	promoter-TSS (NM_001309460)	-123.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	179.29	182.86	142.61	169.33	174.28	229.54	127.89	133.37	196.49	236.49	227.62	108.39
Merged-chrX-75095946-3	chrX	75095843	75096043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001030307)	promoter-TSS (NM_001030307)	89.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	102.97	129.54	148.32	133.93	154.64	156.79	107.29	158.78	153.22	145.61	186.92	92.73
Merged-chr16-36875013-3	chr16	36874874	36875074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-148.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	203.92	210.78	195.1	207.54	221.73	275.94	203.29	208.94	287.75	289.21	271.34	152.25
Merged-chr6-72025666-3	chr6	72025569	72025769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	16859.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	37.55	34.21	44.5	27.75	43.36	78.08	29.9	42.87	72.58	69.29	61.81	33.21
Merged-chr10-79780254-3	chr10	79780153	79780353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	2979.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	121.95	105.39	132.92	106.99	139.5	138.91	93.34	99.06	177.02	218.92	190.44	114.66
Merged-chr5-137533645-3	chr5	137533559	137533759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010312)	promoter-TSS (NM_010312)	-353.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	74.7	58.1	75.87	57.11	66.68	89.68	54.14	62.08	75.33	92.39	81.4	48.87
Merged-chr8-69037931-3	chr8	69037813	69038013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50823.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	7.67	18.61	16.54	4.83	23.73	45.78	22.59	21.95	36.78	40.67	17.08	15.66
Merged-chr11-114927705-3	chr11	114927586	114927786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	6700.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	46.44	39.24	62.18	18.9	41.32	69.61	46.5	16.09	57.63	40.67	61.3	21.3
Merged-chr11-34058378-3	chr11	34058279	34058479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	MTD|LTR|ERVL-MaLR	11451.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	65.41	66.4	67.31	53.09	70.77	93.13	35.87	56.07	103.85	85.36	95.97	47.62
Merged-chr11-3157016-2	chr11	3156902	3157102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 11 of 32)	intron (NM_030207, intron 11 of 32)	32981.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	148.6	125.51	154.59	162.49	290.87	296.95	250.79	373.29	3.15	0.0	2.01	2.51
Merged-chr11-32554205-3	chr11	32554108	32554308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	URR1B|DNA|hAT-Charlie	20942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	32.71	42.26	30.23	26.95	68.73	79.65	46.84	54.84	83.59	78.33	79.89	46.68
Merged-chr5-113621233-3	chr5	113621112	113621312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	22391.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	18.98	14.09	30.23	30.97	30.68	50.17	37.2	42.73	29.31	34.14	34.17	28.51
Merged-chr12-82470254-3	chr12	82470164	82470364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146661.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	38.36	29.43	38.22	24.13	20.46	16.62	10.96	19.85	20.65	34.65	17.08	21.3
Merged-chr9-120933389-3	chr9	120933288	120933488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-12.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	116.29	139.09	83.86	83.66	106.37	134.84	79.72	74.36	152.04	157.16	139.69	78.0
Merged-chr1-46921762-3	chr1	46921662	46921862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	4014.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	52.49	64.64	55.33	61.13	69.14	85.92	48.16	70.43	77.89	63.27	73.36	31.33
Merged-chr7-100508838-3	chr7	100508744	100508944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153527, intron 3 of 7)	URR1B|DNA|hAT-Charlie	5971.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	35.53	35.21	46.21	44.24	47.05	52.05	49.16	55.88	66.28	63.77	59.29	48.87
Merged-chr15-73733232-3	chr15	73733133	73733333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	8303.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	36.34	30.43	20.54	17.29	29.05	64.28	29.9	16.18	45.04	50.21	40.2	21.3
Merged-chr1-88510054-2	chr1	88509948	88510148	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008132)	promoter-TSS (NM_008132)	18.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	2.02	0.0	1.14	0.8	23.32	18.19	15.61	34.09	26.55	30.13	30.15	31.64
Merged-chr12-3806486-3	chr12	3806430	3806630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271753)	promoter-TSS (NM_001271753)	-450.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	39.17	41.25	25.67	35.39	41.73	64.28	36.87	32.24	54.88	46.19	51.25	19.11
Merged-chr17-47216030-3	chr17	47215943	47216143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-14187.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	27.05	26.16	22.82	38.61	31.09	20.07	24.58	36.95	32.45	37.66	39.19	21.62
Merged-chr19-12833318-3	chr19	12833214	12833414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361971, exon 9 of 9)	exon (NM_001361971, exon 9 of 9)	-28463.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	40.78	24.4	33.66	31.37	31.91	37.32	20.26	40.4	25.57	23.6	30.65	20.36
Merged-chr7-63914270-3	chr7	63914185	63914385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-2572.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	35.94	39.24	35.37	43.84	62.59	58.32	27.9	65.38	47.99	44.19	70.35	44.8
Merged-chr5-24750859-3	chr5	24750758	24750958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153076)	TTS (NM_153076)	6985.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	32.3	21.38	25.67	17.7	35.59	45.78	27.24	51.39	65.89	56.24	81.9	33.52
Merged-chr2-62646202-3	chr2	62646112	62646312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	43.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	71.47	112.18	59.9	65.16	75.68	158.04	44.51	80.72	150.27	167.2	114.06	68.92
Merged-chr17-50490864-3	chr17	50490770	50490970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18677.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	18.17	25.91	43.93	19.71	26.18	31.04	23.25	35.92	32.85	25.61	41.2	26.94
Merged-chr2-131436333-3	chr2	131436254	131436454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-55508.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	19.38	37.98	42.78	20.51	54.41	76.83	26.57	32.78	81.23	91.38	58.79	31.95
Merged-chr10-37337498-3	chr10	37337410	37337610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198584.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	95.7	70.68	65.6	45.85	74.87	95.01	60.79	67.32	97.75	99.42	102.0	44.17
Merged-chr9-111553426-1	chr9	111553326	111553526	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114345.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	1.62	4.28	4.56	10.46	2.45	3.45	2.66	6.53	42.09	23.1	33.16	20.99
Merged-chr9-50462550-3	chr9	50462445	50462645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31980.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	21.0	12.07	22.82	25.74	35.59	32.61	17.27	27.34	29.11	29.62	53.77	28.19
Merged-chr5-85915185-3	chr5	85915072	85915272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150411.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	26.65	35.72	41.07	48.26	112.91	86.23	64.44	110.58	78.48	60.75	84.42	46.05
Merged-chr12-75596361-3	chr12	75596276	75596476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-176.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	186.55	194.18	249.29	184.61	225.83	211.98	172.4	253.09	253.53	193.81	301.99	145.67
Merged-chr19-42045437-3	chr19	42045326	42045526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-425.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	67.84	56.85	54.76	74.41	74.87	75.26	43.18	70.18	86.35	82.85	89.94	31.01
Merged-chr5-117978097-3	chr5	117977992	117978192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346588, intron 2 of 11)	intron (NM_001346588, intron 2 of 11)	1322.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	27.46	13.83	25.67	14.48	19.64	21.32	17.27	28.85	26.16	21.09	37.69	29.45
Merged-chr15-25407384-3	chr15	25407258	25407458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	6406.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	50.07	55.84	50.2	27.75	37.64	64.6	35.21	28.65	61.37	53.73	45.22	26.0
Merged-chr1-173978961-1	chr1	173978861	173979061	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 1 of 6)	Lx3_Mus|LINE|L1	3883.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	2.02	2.52	0.0	0.0	32.32	35.12	17.94	22.23	0.59	0.5	5.02	0.63
Merged-chr2-159587288-3	chr2	159587187	159587387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-360054.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	27.05	20.63	21.11	22.93	31.09	44.84	25.24	29.83	31.47	36.15	59.29	6.89
Merged-chr16-92697399-3	chr16	92697307	92697507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-78.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	63.4	60.62	71.31	80.84	39.68	56.13	35.21	63.36	59.6	52.72	56.28	45.11
Merged-chr13-93192400-3	chr13	93192310	93192510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133905)	promoter-TSS (NM_133905)	7.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	193.42	164.75	167.71	164.9	193.92	227.97	131.54	158.61	183.71	176.24	195.97	103.38
Merged-chr5-22917383-2	chr5	22917289	22917489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-170505.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	17.36	18.61	34.8	24.94	0.41	0.0	0.0	0.7	42.88	35.15	45.73	27.25
Merged-chr16-32113747-3	chr16	32113665	32113865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13963.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	72.68	72.94	77.01	86.07	96.96	92.82	66.43	73.74	91.66	90.88	80.4	61.71
Merged-chr9-47642858-3	chr9	47642759	47642959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	112507.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	27.86	23.39	29.09	37.81	25.36	31.36	21.59	38.97	21.64	15.06	38.69	14.41
Merged-chr13-91702519-3	chr13	91702421	91702621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015501, exon 2 of 2)	non-coding (NR_015501, exon 2 of 2)	-39000.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	76.32	73.45	121.51	135.94	96.96	98.78	112.94	155.38	96.38	77.83	187.43	67.67
Merged-chr12-102469563-3	chr12	102469462	102469662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-348.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	37.55	36.47	27.38	25.34	41.32	67.42	29.9	30.7	47.4	33.14	34.17	30.07
Merged-chr10-42860275-3	chr10	42860159	42860359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172938)	promoter-TSS (NM_172938)	-253.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	65.82	50.31	47.92	74.81	63.0	72.75	51.82	52.91	63.14	51.21	44.72	28.82
Merged-chr4-111719947-3	chr4	111719841	111720041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	-69.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	86.01	89.29	78.15	61.13	123.55	127.0	76.73	86.05	211.83	242.01	323.6	145.98
Merged-chr10-41450383-3	chr10	41450294	41450494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	36.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	111.85	92.31	83.29	108.19	108.41	127.31	91.35	131.66	155.38	120.0	160.79	103.38
Merged-chr9-35199943-3	chr9	35199841	35200041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177847)	promoter-TSS (NM_001177847)	24.0	NM_001177846	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	35.53	42.01	72.45	28.56	59.73	48.6	42.52	53.24	56.25	54.23	88.44	26.63
Merged-chr11-119390466-3	chr11	119390351	119390551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-21.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	25.04	22.39	28.52	15.28	22.09	38.88	14.28	30.95	36.58	32.64	31.15	30.39
Merged-chr17-50470090-3	chr17	50469982	50470182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39465.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	21.0	33.45	33.66	49.87	35.18	34.81	47.5	43.04	40.91	45.19	37.18	26.94
Merged-chr19-11989525-3	chr19	11989419	11989619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033174, intron 11 of 13)	intron (NM_001033174, intron 11 of 13)	23675.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	30.28	34.96	26.24	27.75	40.5	30.73	22.92	33.31	33.04	32.13	33.67	26.31
Merged-chr6-72140600-3	chr6	72140495	72140695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-17398.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	176.86	152.17	217.34	190.24	184.51	230.79	206.28	234.56	185.48	225.95	249.23	136.9
Merged-chr2-25196830-3	chr2	25196737	25196937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-24.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	54.92	65.65	72.45	67.17	78.14	98.78	76.07	90.67	100.7	84.35	146.72	63.59
Merged-chr10-82623198-3	chr10	82623051	82623251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135567)	promoter-TSS (NM_001135567)	77.0	NM_001135569	544717.0	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	28.67	32.45	29.09	25.34	28.64	33.24	22.92	33.5	45.63	61.26	74.37	41.35
Merged-chr16-10480006-3	chr16	10479891	10480091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302619)	promoter-TSS (NM_001302619)	-81.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	41.59	25.91	57.05	44.64	25.36	28.54	17.61	38.61	34.22	13.56	14.07	10.65
Merged-chr15-57695585-3	chr15	57695558	57695758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	CpG	991.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	30.69	46.78	33.66	20.91	46.23	60.21	38.53	49.65	67.07	61.76	56.78	38.53
Merged-chr9-111579736-3	chr9	111579641	111579841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 8 of 10)	B4|SINE|B4	110607.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	17.77	13.33	32.52	20.91	44.59	35.75	57.47	51.2	62.74	65.78	72.36	50.75
Merged-chr17-26244301-3	chr17	26244217	26244417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-75.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	99.74	110.42	121.51	91.7	128.87	120.1	69.76	63.48	167.18	180.26	160.79	83.96
Merged-chr15-98918256-3	chr15	98918159	98918359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-161.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	185.75	187.14	223.62	154.85	222.55	283.16	156.45	199.01	216.55	242.52	242.7	134.7
Merged-chr16-22857692-3	chr16	22857615	22857815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	-46.0	NM_001316746	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	253.99	261.84	261.27	233.68	306.01	350.26	216.91	250.46	312.93	312.31	332.64	165.72
Merged-chr11-48813845-3	chr11	48813757	48813957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145377, intron 1 of 5)	MIRb|SINE|MIR	3534.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	48.05	19.87	57.05	35.39	30.68	41.71	45.84	51.11	38.35	32.64	44.72	35.09
Merged-chr16-38902310-3	chr16	38902214	38902414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170599)	promoter-TSS (NM_170599)	-31.0	NM_170599	207683.0	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	62.18	53.58	41.64	51.88	58.91	71.81	79.72	69.39	50.35	50.71	82.91	30.39
Merged-chr14-65358472-3	chr14	65358364	65358564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	-212.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	39.57	44.77	32.52	16.49	43.36	29.79	26.91	27.62	57.63	56.24	52.76	29.45
Merged-chr11-19020547-3	chr11	19020450	19020650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1581.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	58.15	62.88	73.59	72.8	65.87	76.83	38.2	76.49	93.03	83.85	111.55	48.56
Merged-chr15-99457865-3	chr15	99457782	99457982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001884)	promoter-TSS (NM_001001884)	-134.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	44.42	33.7	39.93	36.2	47.87	60.83	41.19	43.21	74.74	99.92	92.46	43.86
Merged-chrX-9474565-3	chrX	9474469	9474669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5245.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	48.46	38.74	41.64	42.63	50.32	47.04	27.57	34.77	46.22	62.26	39.7	39.78
Merged-chr7-100495913-3	chr7	100495830	100496030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	2572.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	154.65	134.06	137.48	150.42	211.51	185.32	97.66	152.75	205.15	211.89	224.61	131.26
Merged-chr12-85602941-3	chr12	85602846	85603046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	MIR|SINE|MIR	2928.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	19.38	18.11	59.33	35.39	29.46	36.69	55.8	57.5	40.52	15.57	42.71	24.12
Merged-chr1-191193775-3	chr1	191193661	191193861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10428.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	45.23	32.7	31.95	22.12	56.87	63.97	14.95	36.81	53.89	50.71	50.75	23.81
Merged-chr9-70260462-3	chr9	70260355	70260555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	53105.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	44.01	41.75	42.21	46.25	41.32	39.82	27.24	38.44	64.91	59.75	85.92	40.41
Merged-chr2-52742266-4	chr2	52742160	52742360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-111.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	39.57	47.79	26.24	47.46	38.46	38.88	53.48	39.2	39.14	46.7	53.26	36.34
Merged-chr2-160210051-3	chr2	160209963	160210163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117431.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	31.09	22.13	37.08	28.15	54.82	58.64	47.83	52.65	65.69	60.75	83.41	41.98
Merged-chr2-128364362-3	chr2	128364263	128364463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	64988.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	79.95	76.21	45.64	35.39	63.41	169.33	40.19	51.31	76.12	90.88	72.86	40.41
Merged-chr13-35941461-1	chr13	35941361	35941561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-26445.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	28.67	30.69	22.25	4.83	18.82	36.37	3.99	9.9	4.72	6.53	8.54	6.27
Merged-chr1-91038180-3	chr1	91038077	91038277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-15267.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	37.15	36.22	49.06	72.4	54.82	62.4	43.51	52.26	61.56	45.19	88.44	26.31
Merged-chr7-34230322-3	chr7	34230200	34230400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008155)	promoter-TSS (NM_008155)	36.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	92.47	105.14	121.51	111.81	119.05	120.73	91.35	130.88	102.67	92.89	150.74	73.62
Merged-chr6-83681762-3	chr6	83681681	83681881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3924.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	37.96	16.35	25.67	31.77	22.91	18.5	19.6	24.22	28.72	38.16	32.66	25.06
Merged-chr5-105624389-3	chr5	105624307	105624507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75562.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	42.4	32.2	48.49	29.36	33.55	32.61	21.92	19.54	35.6	34.65	29.14	27.57
Merged-chr11-50236763-3	chr11	50236665	50236865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132732, intron 4 of 4)	CpG	1767.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	119.52	108.91	144.9	123.88	153.41	168.08	150.47	135.08	162.66	165.69	220.59	111.21
Merged-chr8-108723371-3	chr8	108723274	108723474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8730.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	37.96	44.02	62.75	23.33	53.18	52.37	34.55	64.74	33.83	36.65	42.21	21.93
Merged-chr16-44140647-3	chr16	44140517	44140717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	808.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	97.31	90.05	93.55	97.73	130.09	154.28	119.25	111.34	152.63	167.7	168.33	95.23
Merged-chr1-13648060-3	chr1	13647953	13648153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	12456.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	67.84	84.76	95.27	127.1	87.96	77.14	87.36	150.11	83.4	71.3	94.97	63.59
Merged-chr15-83350185-3	chr15	83350085	83350285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025445)	promoter-TSS (NM_025445)	62.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	68.24	71.18	67.88	63.15	64.23	74.32	48.83	48.17	71.4	60.75	67.33	35.4
Merged-chr9-14276181-3	chr9	14276067	14276267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-134.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	316.58	284.23	333.15	386.92	333.01	378.48	308.59	386.67	420.91	382.6	515.55	266.59
Merged-chr6-108782028-3	chr6	108781916	108782116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1043.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	81.97	71.69	72.45	83.66	92.46	81.22	72.41	103.63	98.34	64.27	94.47	57.01
Merged-chr7-46615800-3	chr7	46615727	46615927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 7 of 10)	MIR3|SINE|MIR	23980.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	77.53	59.86	89.56	125.49	104.73	111.32	92.34	121.65	114.28	115.99	142.71	102.44
Merged-chr8-57652302-3	chr8	57652264	57652464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040698, intron 1 of 3)	CpG	611.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	26.25	22.39	33.66	35.39	31.5	20.07	29.23	28.74	28.13	24.6	39.7	18.17
Merged-chr2-158597000-3	chr2	158596904	158597104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040359, intron 2 of 2)	intron (NR_040359, intron 2 of 2)	13719.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	14.54	11.32	26.24	22.93	21.27	19.44	7.64	14.3	18.49	6.53	33.16	15.98
Merged-chr1-39922884-3	chr1	39922784	39922984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	21971.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	36.75	17.61	32.52	37.4	24.96	14.11	23.25	33.64	17.31	17.07	29.65	26.63
Merged-chr17-29397058-3	chr17	29396960	29397160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36146.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	25.04	30.18	33.66	17.29	19.64	20.7	14.95	11.97	36.78	27.62	42.21	23.18
Merged-chr11-107317923-3	chr11	107317834	107318034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-128553.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	213.2	258.57	230.46	240.52	288.01	267.79	197.64	210.59	264.15	272.64	307.02	179.19
Merged-chr3-13721371-1	chr3	13721271	13721471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	-68506.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	4.44	1.76	6.28	4.83	4.09	2.51	9.3	12.42	6.1	1.51	12.06	5.01
Merged-chr15-76477355-3	chr15	76477262	76477462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331154)	promoter-TSS (NM_001331154)	0.0	NM_001331153	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	111.85	98.35	78.15	109.8	124.37	140.48	88.69	84.14	148.7	165.19	168.33	67.04
Merged-chr2-143991170-1	chr2	143991070	143991270	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	20093.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	11.71	6.54	8.56	12.47	13.5	13.48	8.64	10.49	15.74	11.55	11.56	12.84
Merged-chr1-184735269-3	chr1	184735168	184735368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2775.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	26.65	14.34	29.09	29.36	19.64	16.62	15.28	21.28	27.14	26.11	41.71	11.59
Merged-chr19-40994238-3	chr19	40994150	40994350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008528, exon 1 of 17)	5' UTR (NM_008528, exon 1 of 17)	285.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	48.86	39.99	55.33	72.8	47.05	40.76	30.56	60.62	63.14	41.67	53.26	44.48
Merged-chr3-129948596-3	chr3	129948495	129948695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	21611.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	27.86	20.37	22.25	18.5	25.77	45.47	22.92	48.59	25.37	21.09	29.65	20.36
Merged-chr5-105662078-3	chr5	105661960	105662160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37909.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	72.28	63.13	94.13	101.76	94.09	104.11	83.37	112.09	73.56	60.75	114.57	41.04
Merged-chr7-31148909-3	chr7	31148805	31149005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 1 of 18)	(CAGC)n|Simple_repeat|Simple_repeat	2266.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	44.82	45.02	48.49	36.2	48.68	62.71	40.86	67.04	61.96	57.74	85.42	28.82
Merged-chr4-59440155-3	chr4	59440045	59440245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1512.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	67.03	38.74	85.0	67.17	86.32	74.94	84.37	97.51	58.22	71.8	58.79	36.97
Merged-chr11-76587537-3	chr11	76587439	76587639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9800.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	121.95	97.84	116.94	103.77	91.23	116.02	77.73	89.94	104.44	105.94	114.06	67.67
Merged-chr4-155235130-3	chr4	155235009	155235209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12574.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	16.96	18.86	38.22	23.33	40.09	26.34	23.25	25.09	40.32	35.65	53.77	20.05
Merged-chr6-97814402-3	chr6	97814303	97814503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	7345.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	27.05	23.14	29.09	29.36	16.36	31.36	15.28	18.48	25.37	26.11	37.18	17.86
Merged-chr8-91082157-3	chr8	91082088	91082288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12131.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	52.9	51.81	31.38	24.53	83.05	119.16	59.46	42.93	65.3	82.85	72.86	27.25
Merged-chr15-58141384-3	chr15	58141300	58141500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	34.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	48.05	49.8	45.64	38.61	62.59	55.19	51.82	56.8	74.94	73.31	82.91	52.32
Merged-chr2-59427420-3	chr2	59427331	59427531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40749.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	27.86	41.5	17.11	17.29	34.77	65.85	25.58	32.86	32.65	32.64	35.17	16.29
Merged-chr12-26415283-3	chr12	26415197	26415397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081977)	promoter-TSS (NM_001081977)	-35.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	54.11	28.93	22.82	31.77	44.18	43.9	23.92	46.46	36.19	32.64	41.71	14.1
Merged-chr14-20181792-1	chr14	20181692	20181892	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021542)	promoter-TSS (NM_021542)	-10.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	17.36	4.02	2.28	4.42	12.27	12.23	19.93	15.84	3.15	2.51	2.51	6.27
Merged-chr13-17993337-3	chr13	17993239	17993439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	12.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	51.69	50.81	53.05	59.53	54.82	66.48	53.81	65.05	89.3	62.76	110.04	49.81
Merged-chr15-81514397-3	chr15	81514309	81514509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48093.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	78.34	82.5	77.58	85.67	110.87	106.61	79.06	96.34	98.54	93.89	122.61	52.94
Merged-chrX-36808017-3	chrX	36807916	36808116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9184.0	NR_131979	69591.0	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	130.43	110.67	138.05	137.55	115.78	150.51	117.92	147.42	110.34	123.02	146.22	83.96
Merged-chr11-115119645-3	chr11	115119561	115119761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169153, intron 4 of 6)	intron (NM_001169153, intron 4 of 6)	14331.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	45.63	27.42	45.64	23.33	49.09	61.77	43.18	55.99	68.45	38.16	48.74	47.62
Merged-chr18-60848986-3	chr18	60848873	60849073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	-9.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	119.93	141.36	110.67	92.91	153.0	154.9	85.04	113.92	166.4	176.24	187.43	95.86
Merged-chr4-45409537-3	chr4	45409439	45409639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-773.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	40.38	30.43	32.52	29.76	18.82	25.4	29.23	35.27	45.24	30.63	41.2	28.51
Merged-chrX-155213650-1	chrX	155213550	155213750	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291865, exon 7 of 7)	exon (NM_001291865, exon 7 of 7)	2799.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	3.23	0.0	4.56	3.62	0.41	0.63	6.64	6.48	5.31	4.02	6.03	3.45
Merged-chr6-120452572-3	chr6	120452470	120452670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10627.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	24.23	22.64	17.11	13.67	41.32	37.32	23.58	40.63	31.08	36.65	58.29	22.87
Merged-chr17-43558033-3	chr17	43557920	43558120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10431.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	83.18	50.81	63.89	78.83	85.91	87.49	83.37	79.74	72.58	100.92	146.72	35.71
Merged-chr11-74994306-3	chr11	74994211	74994411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	68439.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	24.63	19.62	44.5	24.94	34.36	36.06	32.22	30.62	37.76	37.66	35.68	30.7
Merged-chr12-86888756-4	chr12	86888644	86888844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3930.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	49.67	33.7	20.54	38.21	43.77	50.17	36.54	29.33	44.25	64.27	48.24	33.52
Merged-chr4-123412085-4	chr4	123412008	123412208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167918)	promoter-TSS (NM_001167918)	-197.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	15.75	16.6	12.55	12.07	24.96	26.34	19.6	14.44	25.37	28.12	31.66	16.29
Merged-chr6-100100870-3	chr6	100100757	100100957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	186501.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	49.67	31.44	56.48	52.69	48.27	43.9	34.21	56.3	51.73	54.73	50.25	36.34
Merged-chr17-47226018-1	chr17	47225918	47226118	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-4212.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	8.08	3.27	5.13	4.02	13.09	5.33	9.3	10.99	7.08	11.05	12.06	6.89
Merged-chr6-123266046-3	chr6	123265940	123266140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163161, intron 2 of 5)	L1ME3A|LINE|L1	3933.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	20.19	20.63	43.35	22.93	60.55	62.71	33.55	35.05	66.48	72.81	62.31	45.42
Merged-chr7-45299945-3	chr7	45299823	45300023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17050.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	34.73	26.66	18.83	25.74	24.14	39.82	20.59	30.98	27.73	40.17	44.72	26.63
Merged-chr13-110357187-3	chr13	110357084	110357284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177713)	promoter-TSS (NM_177713)	-12.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	47.65	40.75	45.64	56.71	62.18	68.36	57.8	89.24	72.18	53.73	69.85	26.94
Merged-chr12-32823580-3	chr12	32823480	32823680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045032)	promoter-TSS (NR_045032)	-536.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	82.78	61.88	56.48	49.47	74.87	95.01	53.48	66.14	97.95	82.85	55.78	46.68
Merged-chr13-45391719-3	chr13	45391644	45391844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2002.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	52.49	34.46	66.17	47.86	57.27	78.39	53.15	68.72	72.18	62.26	107.53	49.81
Merged-chr5-110810189-3	chr5	110810105	110810305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-124.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	182.11	182.11	179.12	175.36	224.6	263.4	152.8	180.81	296.61	298.25	362.29	167.91
Merged-chr5-125358413-3	chr5	125358283	125358483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17289.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	123.16	107.65	138.05	131.92	122.32	114.45	95.67	124.29	139.06	134.56	148.73	83.02
Merged-chr6-137754575-3	chr6	137754487	137754687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172733)	promoter-TSS (NM_172733)	10.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	34.73	42.01	30.23	36.6	32.73	46.1	55.14	37.93	36.39	45.69	51.25	28.82
Merged-chr18-67391353-3	chr18	67391211	67391411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026473, intron 1 of 3)	CpG	580.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	61.78	53.07	44.5	51.88	71.59	60.52	49.49	59.8	58.02	57.74	80.9	41.66
Merged-chr5-72184148-3	chr5	72184045	72184245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15956.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	96.91	65.4	59.33	86.88	66.27	75.57	32.22	56.89	82.22	79.83	85.92	37.59
Merged-chr8-13649323-3	chr8	13649213	13649413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	L1M4|LINE|L1	28274.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	32.3	28.67	48.49	33.78	49.09	30.73	42.19	50.05	31.08	19.08	36.68	26.63
Merged-chr16-39197154-3	chr16	39197055	39197255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8205.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	15.75	7.29	23.39	20.51	29.05	17.25	19.6	27.56	39.73	18.58	35.17	21.62
Merged-chrUn_JH584304-40131-1	chrUn_JH584304	40031	40231	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19558.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	56.65	68.29	86.93	53.57
Merged-chr2-12033931-3	chr2	12033762	12033962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	256109.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	27.46	24.15	28.52	18.1	13.09	26.97	28.57	24.87	32.06	29.62	23.62	22.56
Merged-chr13-81132883-3	chr13	81132781	81132981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	168807.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	55.32	45.53	70.74	85.27	65.87	66.79	60.46	70.6	71.99	78.33	72.86	51.69
Merged-chr19-38027053-3	chr19	38026972	38027172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	16505.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	23.82	20.88	14.26	51.48	38.46	25.4	12.62	25.23	14.16	17.07	25.63	23.49
Merged-chr12-102469067-3	chr12	102468957	102469157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199004)	promoter-TSS (NM_001199004)	-77.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	190.19	183.87	191.67	157.66	217.23	211.98	152.8	203.33	276.15	312.81	320.58	169.16
Merged-chr4-53826009-3	chr4	53825902	53826102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028053)	promoter-TSS (NM_028053)	-43.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	43.21	38.99	41.07	32.58	53.59	88.74	51.82	54.73	68.45	55.73	56.28	30.7
Merged-chr3-103801986-3	chr3	103801872	103802072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133865, exon 4 of 4)	3' UTR (NM_133865, exon 4 of 4)	-1157.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	48.46	22.13	78.72	56.31	56.87	42.33	55.14	63.42	43.47	34.65	73.36	60.15
Merged-chrX-145505256-1	chrX	145505156	145505356	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17617.0	NM_153319	27494.0	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	9.29	2.01	2.85	4.02	23.32	22.26	19.6	22.29	5.51	9.04	5.02	6.58
Merged-chr17-25274106-3	chr17	25273984	25274184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-40.0	NR_027452	100272221.0	Mm.478766	NR_027452		Gm17801	-	predicted gene, 17801	ncRNA	25.84	26.16	14.83	18.9	34.77	36.37	16.28	27.5	33.44	40.67	42.21	30.7
Merged-chr7-28338838-3	chr7	28338744	28338944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-125.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	150.21	112.43	116.37	112.21	119.46	168.7	63.44	98.27	161.87	161.68	166.82	69.86
Merged-chr2-153117294-3	chr2	153117153	153117353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	8785.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	77.53	73.95	131.78	120.26	108.0	116.34	106.29	153.65	85.95	51.21	143.71	77.69
Merged-chr19-34192635-3	chr19	34192552	34192752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360717)	promoter-TSS (NM_001360717)	-282.0	NM_001360717	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	65.82	66.65	43.35	75.21	77.73	82.16	46.17	85.82	90.67	93.39	96.98	63.59
Merged-chr7-90146505-3	chr7	90146406	90146606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16293.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	29.07	24.65	33.09	32.58	29.86	59.27	42.19	36.45	38.55	48.2	53.26	39.78
Merged-chr13-44800220-3	chr13	44800120	44800320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	68949.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	33.52	21.38	45.07	43.04	27.0	46.41	36.87	35.05	52.91	38.16	49.24	35.71
Merged-chr11-75141268-3	chr11	75141190	75141390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26862.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	87.22	62.13	92.41	78.03	66.27	112.57	92.68	97.96	81.04	55.73	74.87	29.76
Merged-chr18-12224587-3	chr18	12224483	12224683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	PB1|SINE|Alu	11803.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	16.56	12.32	28.52	30.57	27.82	21.64	17.94	24.31	27.14	41.17	40.7	16.6
Merged-chr6-43266624-3	chr6	43266531	43266731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133674, intron 1 of 14)	intron (NM_133674, intron 1 of 14)	987.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	13.73	17.61	27.95	18.5	17.59	26.65	19.93	34.15	31.47	20.08	29.14	18.17
Merged-chr5-114784798-3	chr5	114784699	114784899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	9659.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	22.21	20.88	29.09	24.53	26.59	34.81	12.95	20.02	42.29	32.64	22.61	31.33
Merged-chr18-75366679-3	chr18	75366584	75366784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	404.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	30.69	22.64	27.38	57.92	25.77	29.16	35.21	36.53	39.14	45.69	53.77	27.88
Merged-chr4-16083302-1	chr4	16083202	16083402	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69414.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	1.62	1.01	3.99	0.8	4.09	3.45	8.97	14.61	6.49	3.01	8.54	3.45
Merged-chr5-135962656-3	chr5	135962560	135962760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160366, intron 9 of 10)	CpG	11816.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	207.15	206.5	244.73	222.82	246.69	334.27	252.45	191.16	321.39	392.14	438.16	208.01
Merged-chr15-76331205-3	chr15	76331102	76331302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010331)	promoter-TSS (NM_010331)	-92.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	84.39	49.8	58.76	87.68	70.37	78.39	42.85	73.77	75.13	104.44	93.96	43.86
Merged-chr11-109473834-3	chr11	109473748	109473948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134038)	promoter-TSS (NM_134038)	-252.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	210.78	181.6	170.0	177.37	163.64	179.05	120.91	139.49	185.28	208.37	177.88	127.81
Merged-chr8-120103043-3	chr8	120102927	120103127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1555.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	34.32	34.21	30.23	26.55	43.77	57.7	57.47	78.03	64.32	57.24	58.79	30.07
Merged-chr8-10663992-3	chr8	10663885	10664085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	218469.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	105.39	113.94	144.9	142.78	120.69	108.5	125.23	136.37	105.62	100.42	149.24	88.03
Merged-chr8-104565056-3	chr8	104564960	104565160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23751.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	35.13	33.45	38.79	38.21	44.18	62.4	29.56	44.02	66.87	53.73	102.51	47.3
Merged-chr12-111071929-3	chr12	111071808	111072008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	32110.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	40.78	51.81	55.33	47.46	54.82	70.24	32.22	49.79	68.45	46.7	63.82	37.28
Merged-chr16-87653104-3	chr16	87653008	87653208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45846.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	79.55	71.43	82.72	85.67	86.32	120.41	75.07	108.08	110.74	77.83	104.01	57.64
Merged-chr7-123371619-3	chr7	123371532	123371732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1717.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	54.92	46.78	59.9	40.22	49.09	47.66	36.54	39.0	69.04	75.32	57.28	43.23
Merged-chr2-130629950-3	chr2	130629830	130630030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146084)	promoter-TSS (NM_001146084)	97.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	8.08	15.59	2.28	21.32	16.36	20.07	17.27	18.84	21.05	17.07	24.62	15.35
Merged-chr7-19086193-3	chr7	19086086	19086286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037282)	promoter-TSS (NR_037282)	-642.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	53.3	46.78	72.45	59.53	39.27	61.77	34.88	45.39	119.78	68.79	107.53	69.23
Merged-chr11-86570450-3	chr11	86570341	86570541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13717.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	16.56	13.83	45.07	17.7	34.77	33.24	45.18	69.14	46.62	27.62	51.25	38.53
Merged-chr4-120666508-3	chr4	120666409	120666609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019563)	promoter-TSS (NM_019563)	-54.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	33.11	18.86	19.97	29.76	33.14	34.81	18.6	38.52	39.73	29.12	45.73	24.43
Merged-chr17-44783345-3	chr17	44783232	44783432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	6166.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	35.53	31.94	51.34	39.42	56.05	35.75	33.22	52.63	49.96	41.17	63.82	38.22
Merged-chr15-73148918-3	chr15	73148816	73149016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36031.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	22.21	22.64	21.11	28.96	26.18	43.27	22.59	31.96	58.81	42.68	54.27	33.52
Merged-chr10-81182868-3	chr10	81182754	81182954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-153.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	195.03	229.65	183.12	186.22	213.96	265.28	173.06	202.43	258.84	246.53	309.53	169.79
Merged-chr3-36469074-3	chr3	36468980	36469180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	6444.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	36.75	27.42	27.38	33.78	46.23	57.38	65.77	67.35	60.78	66.28	90.95	30.39
Merged-chr18-75342955-3	chr18	75342852	75343052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	24136.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	29.88	32.7	46.78	44.24	33.55	47.35	26.91	35.47	31.47	46.19	36.18	29.76
Merged-chr12-85943039-3	chr12	85942946	85943146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118096.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	42.8	34.21	48.49	69.98	42.14	55.5	31.56	56.16	40.71	55.73	45.73	39.16
Merged-chr15-36608024-3	chr15	36607930	36608130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	57.74	56.59	67.31	61.94	67.09	82.78	92.34	101.24	89.49	85.86	152.75	67.67
Merged-chr17-34639776-3	chr17	34639673	34639873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5110.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	44.01	55.08	63.89	30.97	62.18	74.94	60.46	39.73	74.15	73.81	61.3	36.34
Merged-chr18-64516619-3	chr18	64516524	64516724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-67.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	148.6	140.35	186.54	170.93	170.19	231.1	161.44	168.0	212.62	215.4	261.79	117.79
Merged-chr6-97458186-3	chr6	97458087	97458287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	75.91	60.87	60.47	71.19	83.46	90.62	72.41	92.69	101.69	93.39	111.05	66.73
Merged-chr9-110101022-3	chr9	110100895	110101095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252683)	promoter-TSS (NM_001252683)	92.0	NM_001252683	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	23.42	22.89	14.26	25.74	31.91	31.04	27.57	17.52	20.85	20.59	28.64	11.9
Merged-chr17-24886538-3	chr17	24886414	24886614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355396)	promoter-TSS (NM_001355396)	-129.0	NR_152137	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	225.32	221.85	180.26	199.09	241.37	312.95	169.74	164.78	302.11	317.33	256.77	169.48
Merged-chr16-57482440-3	chr16	57482350	57482550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66792.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	47.65	51.56	65.6	57.11	60.96	70.87	57.47	75.79	96.57	60.75	92.96	47.62
Merged-chr3-68557149-3	chr3	68557099	68557299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113421, intron 2 of 7)	intron (NM_001113421, intron 2 of 7)	-15169.0	NM_013928	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	14.54	17.61	27.95	34.19	18.0	20.38	24.91	26.19	12.98	19.58	28.14	21.3
Merged-chr6-6310392-1	chr6	6310292	6310492	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136905, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	61733.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	6.46	0.5	1.14	2.41	22.5	28.22	16.28	10.4	6.1	7.53	11.05	5.33
Merged-chr1-151287733-3	chr1	151287636	151287836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56750.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	33.11	26.66	31.38	45.85	33.96	34.81	36.21	43.01	33.44	42.68	62.81	35.09
Merged-chr6-39076725-3	chr6	39076628	39076828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 10 of 12)	intron (NM_011539, intron 10 of 12)	-9142.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	34.73	32.2	66.17	49.07	55.64	52.99	51.15	61.65	53.7	66.28	69.34	54.2
Merged-chr12-87443855-3	chr12	87443782	87443982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026958)	promoter-TSS (NM_026958)	-14.0	NM_026958	380773.0	Mm.355701	NM_026958	ENSMUSG00000021040	Slirp	1810035L17Rik	SRA stem-loop interacting RNA binding protein	protein-coding	38.36	34.21	22.82	53.09	57.68	46.1	42.85	40.07	89.3	53.22	74.87	58.27
Merged-chrX-53370579-3	chrX	53370456	53370656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290514)	promoter-TSS (NM_001290514)	3.0	NM_001358456	70380.0	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	42.8	34.96	48.49	45.05	47.87	56.44	44.18	73.71	59.79	57.74	66.33	32.89
Merged-chr1-135620031-3	chr1	135619943	135620143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22267.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	76.72	63.64	103.25	106.58	78.55	106.61	47.83	103.57	119.59	115.48	137.18	71.74
Merged-chr7-143548327-3	chr7	143548208	143548408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	520.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	28.67	11.82	19.97	16.09	41.73	46.1	21.59	24.67	29.31	31.13	35.68	14.41
Merged-chr4-109202168-3	chr4	109202052	109202252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	120.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	54.11	64.39	64.46	64.75	66.27	72.75	74.74	51.2	40.71	59.75	70.35	39.16
Merged-chr18-82785372-3	chr18	82785273	82785473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-26334.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	23.02	30.18	40.5	30.16	40.5	34.18	23.25	35.72	55.27	37.66	62.81	39.47
Merged-chr10-111119407-3	chr10	111119285	111119485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45417.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	21.0	11.57	18.83	21.32	39.68	28.22	18.6	39.28	30.88	14.56	27.64	12.22
Merged-chr10-13935890-1	chr10	13935790	13935990	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-30185.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	2.28	0.0	0.0	4.08	0.66	0.81	20.46	22.09	25.63	11.9
Merged-chr6-86527150-2	chr6	86527002	86527202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-228.0	NR_037960	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	27.05	30.69	23.96	33.78	18.0	40.76	22.59	21.73	31.86	36.65	44.22	40.72
Merged-chr9-105803557-1	chr9	105803457	105803657	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 1 of 36)	ORR1E|LTR|ERVL-MaLR	6091.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	3.23	1.26	0.0	3.22	2.86	2.51	8.97	7.85	0.39	0.0	0.5	0.94
Merged-chr7-80993531-3	chr7	80993417	80993617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178707)	promoter-TSS (NM_178707)	-167.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	54.11	48.8	33.09	31.77	49.09	42.02	40.52	42.87	29.7	30.63	53.77	21.93
Merged-chr7-80640001-3	chr7	80639898	80640098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	3981.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	71.07	60.12	104.96	74.0	76.5	90.94	67.1	74.66	91.85	101.43	117.58	71.74
Merged-chr13-37331184-3	chr13	37331096	37331296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14149.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	15.34	24.65	39.93	47.46	24.55	18.19	38.86	39.31	34.81	20.59	44.22	25.69
Merged-chr4-132600714-3	chr4	132600607	132600807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36640.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	70.66	66.65	69.6	82.45	90.0	128.88	102.31	134.47	96.77	60.25	94.97	63.91
Merged-chr18-80225015-2	chr18	80224915	80225115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	18148.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	14.13	15.85	19.97	20.51	25.77	20.38	24.25	29.55	5.11	3.51	10.05	8.77
Merged-chr9-63758179-3	chr9	63758077	63758277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016769)	promoter-TSS (NM_016769)	-183.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	123.16	133.81	102.11	115.83	98.59	125.43	118.25	104.83	109.75	120.0	147.23	69.86
Merged-chr4-75275944-3	chr4	75275848	75276048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	2344.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	36.75	51.06	58.76	71.19	62.18	72.44	53.15	64.35	81.63	63.27	130.65	53.26
Merged-chr7-132575832-3	chr7	132575734	132575934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	564.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	119.52	114.7	130.06	156.86	134.6	174.35	94.67	143.52	191.57	176.74	234.66	123.74
Merged-chr16-49857758-3	chr16	49857654	49857854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	2100.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	23.02	26.91	44.5	43.44	28.23	39.82	55.14	48.11	27.73	27.62	67.84	19.11
Merged-chr4-137913551-4	chr4	137913477	137913677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 2 of 19)	CpG	51340.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	38.76	37.98	41.64	50.68	43.77	48.6	43.51	43.49	36.98	26.11	21.61	13.16
Merged-chr5-21372696-3	chr5	21372579	21372779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	6.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	35.94	39.49	60.47	28.96	45.41	33.55	25.91	52.12	51.53	65.27	61.3	26.0
Merged-chr12-101995041-2	chr12	101994936	101995136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016856, intron 8 of 14)	intron (NM_016856, intron 8 of 14)	19062.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	25.84	21.13	19.4	30.97	0.0	0.0	0.0	0.0	26.55	24.1	54.27	21.93
Merged-chr17-12159525-3	chr17	12159420	12159620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	40236.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	31.9	37.48	47.92	49.87	24.14	48.6	62.45	51.73	51.93	44.19	74.87	53.26
Merged-chr9-116145403-3	chr9	116145296	116145496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	29967.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	58.55	54.83	67.31	50.27	51.14	55.82	45.84	75.17	45.83	33.64	47.23	27.57
Merged-chr11-3130884-2	chr11	3130798	3130998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_030207)	TTS (NM_030207)	6877.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	27.05	17.61	15.97	18.1	20.46	16.93	30.23	22.57	0.2	0.5	0.0	0.0
Merged-chr2-6471268-1	chr2	6471168	6471368	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	118532.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.65	2.77	9.13	6.44	6.55	2.51	6.98	11.86	4.33	1.0	5.02	4.07
Merged-chr4-145774488-3	chr4	145774384	145774584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7059.0	NM_001083918	666532.0	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139	zinc finger protein 991	protein-coding	18.98	21.38	23.96	18.5	19.64	19.44	24.25	0.76	34.03	34.14	44.72	22.87
Merged-chr2-129592718-3	chr2	129592626	129592826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291021)	promoter-TSS (NM_001291021)	-113.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	108.22	108.91	151.17	157.26	142.78	143.3	127.89	131.55	186.66	177.75	230.64	119.67
Merged-chr2-117342277-3	chr2	117342156	117342356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	621.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	31.9	41.0	34.23	26.55	33.55	62.09	24.91	33.06	72.77	65.27	72.86	26.0
Merged-chr17-35380315-3	chr17	35380238	35380438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143689, intron 2 of 5)	CpG-6320	721.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	41.19	50.31	25.1	15.28	63.41	70.87	40.19	55.23	35.99	39.16	40.2	26.0
Merged-chr7-31156479-3	chr7	31156390	31156590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5319.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	56.13	54.08	51.34	33.78	87.14	99.4	52.82	45.59	80.64	77.83	83.91	31.01
Merged-chr1-9700570-3	chr1	9700447	9700647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-338.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	101.35	115.2	102.11	108.59	135.0	163.06	146.16	154.85	186.07	184.77	235.16	83.33
Merged-chr12-69987150-3	chr12	69987038	69987238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022028)	promoter-TSS (NM_022028)	-136.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	123.97	103.38	99.26	80.84	115.78	169.64	83.04	107.19	146.93	185.28	153.26	62.34
Merged-chr7-112023481-5	chr7	112023378	112023578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177249)	promoter-TSS (NM_177249)	-28.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	19.79	17.61	25.1	16.09	25.36	31.04	18.27	25.01	49.37	56.24	50.25	29.13
Merged-chr5-117158808-3	chr5	117158686	117158886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	25198.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	137.29	164.75	180.83	156.05	110.87	158.35	118.25	139.71	168.56	159.67	160.79	93.04
Merged-chr12-110485721-3	chr12	110485602	110485802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-37.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	36.34	37.98	36.51	28.96	33.96	41.39	18.6	26.33	41.3	60.25	45.73	33.52
Merged-chr13-43560283-3	chr13	43560174	43560374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-83.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	155.46	153.68	154.02	154.85	137.87	210.09	120.58	143.66	151.65	138.58	232.65	94.61
Merged-chr12-99883519-3	chr12	99883425	99883625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-83.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	77.53	68.42	69.03	61.94	90.0	84.66	41.52	76.54	104.24	83.35	129.64	42.6
Merged-chr19-58116981-3	chr19	58116887	58117087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65820.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	25.44	19.87	37.65	27.35	23.73	39.51	31.56	30.06	30.68	29.12	33.67	16.92
Merged-chr14-21148543-3	chr14	21148462	21148662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	72410.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	6.46	6.29	24.53	20.11	31.91	20.7	36.87	57.0	19.08	7.53	15.58	17.54
Merged-chr6-124898520-3	chr6	124898441	124898641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10341.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	36.34	33.45	46.78	17.29	28.64	37.63	11.63	19.85	61.76	29.62	52.76	25.37
Merged-chr16-13717125-3	chr16	13717035	13717235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011987, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-12701.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	17.77	28.42	28.52	42.23	31.91	38.26	54.48	33.5	24.39	38.66	49.24	41.66
Merged-chr5-113931074-3	chr5	113930967	113931167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22361.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	30.28	14.59	13.69	26.14	32.32	24.77	13.29	21.2	17.7	25.61	40.7	19.11
Merged-chr12-100067611-3	chr12	100067508	100067708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-44723.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	39.57	22.39	45.07	45.85	51.96	49.23	39.2	60.42	51.73	42.18	46.73	31.33
Merged-chr2-26911340-1	chr2	26911240	26911440	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011513)	promoter-TSS (NM_011513)	533.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	6.86	7.8	2.85	0.8	4.91	7.21	11.29	7.63	14.16	8.03	12.06	9.4
Merged-chr18-10610252-3	chr18	10610161	10610361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081222)	promoter-TSS (NM_001081222)	91.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	152.23	156.7	138.05	116.64	151.37	222.01	154.13	172.29	209.67	217.91	261.79	113.4
Merged-chr5-9161114-1	chr5	9161014	9161214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_152859, intron 1 of 16)	CpG	662.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	14.13	16.1	3.42	13.27	15.96	17.56	21.92	20.66	24.19	11.55	23.62	20.36
Merged-chr9-40701919-2	chr9	40701811	40702011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	RLTR12D|LTR|ERVK	15947.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	33.52	34.71	50.2	55.5	44.18	37.94	38.2	51.17	13.37	2.01	4.52	13.78
Merged-chr7-30650281-3	chr7	30650173	30650373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-45.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	206.74	183.36	190.53	201.1	181.64	260.89	136.85	188.72	238.98	227.96	243.2	120.61
Merged-chr8-14884526-3	chr8	14884420	14884620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4016.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	23.02	17.1	22.25	31.37	26.18	32.93	21.92	35.78	59.4	72.3	71.35	69.86
Merged-chr8-88662523-3	chr8	88662431	88662631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	15184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	176.05	185.88	182.55	186.22	171.41	211.03	147.82	163.54	223.24	197.33	279.38	147.24
Merged-chr12-110486240-3	chr12	110486123	110486323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	484.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	52.49	58.86	45.64	56.71	40.5	77.45	30.23	43.01	67.27	74.31	81.4	49.81
Merged-chr2-50676419-1	chr2	50676319	50676519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-233265.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	18.17	22.64	28.52	29.76	0.82	0.31	0.0	0.34	0.0	0.0	2.01	0.63
Merged-chr7-133048265-3	chr7	133048143	133048343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32996.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	21.4	19.12	47.92	24.94	29.05	17.25	31.56	34.77	38.75	27.11	47.74	23.49
Merged-chr18-77837709-3	chr18	77837614	77837814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-41324.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	151.02	179.59	172.28	142.38	120.69	205.7	125.23	128.33	213.8	177.24	219.58	82.08
Merged-chr10-128459190-4	chr10	128459110	128459310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114096)	promoter-TSS (NM_001114096)	-26.0	NM_001114096	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	14.94	9.56	7.99	2.82	18.82	37.0	8.64	18.9	39.53	49.71	54.27	22.87
Merged-chr7-129760003-3	chr7	129759897	129760097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168134.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	23.42	19.87	48.49	42.63	44.59	25.09	38.86	44.38	34.03	22.09	22.61	22.24
Merged-chr6-114293564-3	chr6	114293467	114293667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	10932.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	68.65	68.42	54.76	43.84	67.5	114.45	67.1	49.54	107.98	79.33	81.9	34.77
Merged-chr7-132316504-5	chr7	132316451	132316651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028578, exon 1 of 1)	non-coding (NR_028578, exon 1 of 1)	475.0	NM_001360768	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	16.56	21.88	26.81	26.14	18.41	21.64	20.59	17.97	31.86	18.08	31.66	28.19
Merged-chr4-42950279-3	chr4	42950182	42950382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-114.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	71.47	52.32	54.19	47.46	83.87	85.29	42.85	58.07	72.58	84.86	106.53	47.62
Merged-chr11-121804385-3	chr11	121804293	121804493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25825.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	81.16	57.85	87.85	104.57	118.64	123.55	88.69	91.32	107.0	106.95	108.03	60.15
Merged-chr17-34305803-3	chr17	34305691	34305891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-76.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	73.49	114.45	138.62	85.27	52.77	65.54	19.93	35.27	136.89	99.42	112.56	87.4
Merged-chr8-126536334-3	chr8	126536220	126536420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57116.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	32.3	16.6	25.67	27.35	57.27	79.65	33.88	59.27	37.37	51.21	51.25	20.99
Merged-chr15-102625314-3	chr15	102625192	102625392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310070, exon 1 of 12)	5' UTR (NM_001310070, exon 1 of 12)	172.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	60.97	109.41	68.45	94.11	88.78	95.64	109.28	73.49	77.3	110.97	98.49	74.24
Merged-chr2-172400114-3	chr2	172400008	172400208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	L2c|LINE|L2	6314.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	116.29	90.8	74.16	86.47	97.37	136.09	51.15	78.28	148.5	128.54	126.63	56.39
Merged-chr11-31898746-3	chr11	31898636	31898836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	URR1A|DNA|hAT-Charlie	27796.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	29.48	34.96	29.66	33.78	34.36	56.44	49.83	44.83	47.6	34.65	41.2	32.58
Merged-chr11-82871236-3	chr11	82871131	82871331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164571)	promoter-TSS (NM_001164571)	-21.0	NM_001164571	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	75.51	104.38	124.36	99.34	117.82	146.75	103.97	86.94	149.88	151.64	160.29	74.56
Merged-chr1-170709708-3	chr1	170709609	170709809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	65177.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	94.89	60.37	121.51	108.59	117.0	135.78	119.91	153.67	91.66	106.95	185.92	86.46
Merged-chr9-58802482-3	chr9	58802374	58802574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21038.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	29.07	11.57	16.54	22.12	24.14	29.48	16.28	18.08	27.34	21.09	31.15	15.66
Merged-chr14-102806786-3	chr14	102806756	102806956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175776.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	63.8	44.27	56.48	65.16	36.0	53.62	28.9	50.5	70.02	49.71	88.44	45.42
Merged-chr9-123863376-3	chr9	123863276	123863476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1347.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	22.21	30.94	42.21	28.15	24.96	28.85	24.91	32.1	51.93	28.12	41.2	36.97
Merged-chr19-32756237-4	chr19	32756211	32756411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1266.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	60.57	52.57	31.38	44.24	65.46	75.57	60.46	38.05	69.04	75.32	74.37	39.16
Merged-chr9-118658860-3	chr9	118658754	118658954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	52145.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	68.24	74.2	83.29	42.63	101.46	145.18	126.22	104.58	158.33	149.63	123.11	65.16
Merged-chr3-28781193-3	chr3	28781081	28781281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177586)	promoter-TSS (NM_177586)	-96.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	68.24	88.03	58.19	72.8	140.73	125.43	111.94	127.63	140.44	171.72	193.96	104.32
Merged-chr7-127904094-3	chr7	127904000	127904200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009739)	promoter-TSS (NM_009739)	27.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	14.94	16.6	17.68	16.09	28.64	16.62	36.21	18.98	24.59	17.57	26.13	20.05
Merged-chr11-113165298-1	chr11	113165198	113165398	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	36540.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.4	2.52	0.0	0.0	1.64	0.94	0.0	2.69	17.9	8.54	17.59	13.16
Merged-chr6-83121532-3	chr6	83121408	83121608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016757)	promoter-TSS (NM_016757)	-47.0	NM_001083922	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	174.04	194.93	213.35	217.19	206.19	259.01	172.73	247.29	237.21	225.45	285.91	136.9
Merged-chr17-31564503-3	chr17	31564401	31564601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-272.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	159.1	172.8	135.2	136.35	143.6	244.9	132.87	109.07	269.07	265.61	263.3	99.93
Merged-chr5-95914269-3	chr5	95914165	95914365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42674.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	33.92	27.17	40.5	37.81	77.73	85.92	56.14	60.87	60.38	69.29	68.34	29.76
Merged-chr6-30304488-3	chr6	30304392	30304592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	47.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	116.29	138.84	101.54	106.18	119.46	148.01	98.99	113.33	136.3	137.07	125.62	83.96
Merged-chr11-52080166-3	chr11	52080063	52080263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-18661.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	89.24	95.83	122.08	119.86	123.96	131.7	88.69	133.29	136.11	105.94	156.77	89.59
Merged-chr7-138909600-3	chr7	138909498	138909698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009760)	promoter-TSS (NM_009760)	-92.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	175.65	158.71	206.51	221.21	202.1	224.83	174.06	215.78	215.77	197.83	246.72	151.31
Merged-chr17-27074472-3	chr17	27074367	27074567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080553, intron 2 of 57)	intron (NM_080553, intron 2 of 57)	-16778.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	19.38	13.08	29.09	29.76	19.64	17.56	23.92	31.82	20.46	4.52	17.08	7.21
Merged-chr7-19326558-3	chr7	19326463	19326663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16518.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	181.3	144.88	184.26	139.16	138.28	210.09	87.03	121.94	246.25	209.38	295.46	106.51
Merged-chr10-83543985-3	chr10	83543894	83544094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	53.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	80.76	92.81	98.12	111.01	90.41	131.7	97.66	98.16	100.7	90.88	191.45	74.56
Merged-chr8-122932609-3	chr8	122932506	122932706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	84232.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	61.78	18.61	27.38	19.31	45.41	44.53	18.27	25.51	33.24	29.12	21.1	13.78
Merged-chr11-94589566-3	chr11	94589467	94589667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	12219.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	119.12	120.48	115.8	101.76	168.14	206.96	112.27	145.85	157.55	158.16	196.47	107.14
Merged-chr17-86753553-3	chr17	86753465	86753665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-299.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	58.15	59.61	61.61	76.42	116.19	103.48	98.99	92.86	95.79	105.94	127.13	63.28
Merged-chr18-65698532-3	chr18	65698423	65698623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	255.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	62.18	47.54	59.33	35.39	59.73	77.77	61.12	51.14	63.33	58.24	64.82	35.09
Merged-chr18-20648632-3	chr18	20648553	20648753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	-16597.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	86.82	92.56	92.98	109.8	121.09	105.05	87.03	92.58	139.85	113.98	136.17	82.7
Merged-chr5-31220706-3	chr5	31220621	31220821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-176.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	142.94	127.52	143.76	137.55	160.78	137.66	103.64	111.39	164.04	146.11	160.29	108.7
Merged-chr18-4836991-3	chr18	4836881	4837081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24495.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	18.17	13.08	9.13	16.89	26.18	13.48	14.28	25.15	20.06	21.59	29.14	18.17
Merged-chr2-34799865-3	chr2	34799758	34799958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	54.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	41.99	28.67	27.95	35.8	52.37	46.1	29.9	27.81	39.14	52.22	67.84	29.76
Merged-chr19-6278310-3	chr19	6278213	6278413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	1417.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	138.1	95.08	112.38	87.68	133.37	163.06	119.25	111.53	122.14	150.63	197.48	53.26
Merged-chr15-82346088-5	chr15	82346036	82346236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	90.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	49.67	69.67	62.75	61.13	51.14	69.3	70.75	42.76	71.99	108.45	75.87	62.03
Merged-chr19-57610684-4	chr19	57610518	57610718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-416.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	52.09	56.34	71.31	53.89	38.05	54.25	31.56	36.06	38.75	48.7	48.24	38.85
Merged-chr10-81356534-3	chr10	81356456	81356656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	-935.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	48.46	53.83	54.76	57.51	56.46	73.69	33.88	41.94	71.4	86.36	73.86	44.8
Merged-chr12-102437175-3	chr12	102437075	102437275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	RSINE1|SINE|B4	2638.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	65.01	50.81	83.29	82.85	77.32	72.44	89.69	81.93	101.49	80.34	117.08	74.56
Merged-chr15-79354815-3	chr15	79354712	79354912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	6410.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	70.66	60.37	42.78	22.93	54.82	80.9	53.81	55.04	120.77	83.35	75.37	43.23
Merged-chr5-52383897-3	chr5	52383791	52383991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	20087.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	67.03	85.27	114.66	122.27	57.68	59.89	52.48	84.45	130.6	104.94	132.66	73.62
Merged-chr5-112341522-3	chr5	112341422	112341622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153106, intron 1 of 6)	intron (NR_153106, intron 1 of 6)	1518.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	40.38	43.26	85.0	50.68	55.23	47.04	40.19	53.69	75.33	54.23	67.84	43.23
Merged-chr7-45515649-3	chr7	45515542	45515742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045555, intron 4 of 13)	intron (NM_001045555, intron 4 of 13)	1040.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	20.19	15.09	27.38	17.7	43.36	33.87	23.92	40.15	29.31	23.1	37.69	20.68
Merged-chr5-64029932-3	chr5	64029829	64030029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15044.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	23.82	19.37	26.81	28.56	34.36	23.2	29.23	34.54	43.86	45.19	58.79	27.88
Merged-chr2-113848343-3	chr2	113848252	113848452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181416, exon 1 of 12)	5' UTR (NM_181416, exon 1 of 12)	309.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	94.49	58.1	74.73	67.97	54.41	57.7	45.51	92.27	102.87	77.83	126.12	71.74
Merged-chr5-31241389-3	chr5	31241288	31241488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147201, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	470.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	54.92	53.83	45.07	28.15	67.91	76.51	42.52	68.55	83.99	57.24	108.03	59.52
Merged-chr1-80659656-3	chr1	80659561	80659761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5691.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	20.19	25.4	27.38	23.33	29.86	28.54	19.6	20.64	28.13	24.1	21.1	22.87
Merged-chr6-127152526-1	chr6	127152426	127152626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-1478.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	19.38	15.85	36.51	20.11	4.5	7.21	2.99	3.25	13.96	9.54	4.02	4.07
Merged-chr1-87625459-3	chr1	87625387	87625587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	L1MB7|LINE|L1	5175.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	33.11	26.16	38.79	35.8	42.96	27.91	22.26	41.61	47.4	39.67	56.78	44.48
Merged-chr10-53629461-3	chr10	53629372	53629572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027830, intron 2 of 13)	CpG	967.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	53.3	40.5	25.1	45.85	43.36	51.43	34.21	52.93	63.14	55.73	103.01	47.3
Merged-chr13-103924284-3	chr13	103924178	103924378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3692.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	56.94	47.54	44.5	44.24	26.18	34.18	18.6	44.8	37.96	32.13	40.2	23.49
Merged-chr14-21848980-3	chr14	21848889	21849089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026965)	promoter-TSS (NM_026965)	-79.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	77.12	68.67	63.89	72.4	73.64	95.64	52.82	93.0	97.16	93.89	105.02	56.07
Merged-chr8-35376547-3	chr8	35376403	35376603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	CpG	762.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	112.66	102.37	96.41	123.48	103.5	124.49	93.67	102.93	92.84	86.36	110.55	68.61
Merged-chr19-46339382-3	chr19	46339267	46339467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-707.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	39.17	41.0	28.52	15.28	36.0	46.72	24.25	31.54	69.04	40.67	64.32	35.09
Merged-chr10-128059788-3	chr10	128059702	128059902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019766, intron 1 of 7)	CpG	820.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	44.01	27.42	26.81	28.15	44.18	38.26	26.24	40.77	47.6	47.2	43.72	27.25
Merged-chr2-79253495-3	chr2	79253406	79253606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1920.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	25.44	17.1	33.66	29.36	22.5	36.06	22.59	27.48	35.21	46.7	42.71	16.6
Merged-chr14-104005447-3	chr14	104005322	104005522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	21720.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	42.8	30.43	42.78	41.02	51.14	62.71	89.02	89.55	77.69	60.25	60.3	37.28
Merged-chr17-30516963-1	chr17	30516863	30517063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172618, intron 5 of 11)	MTC|LTR|ERVL-MaLR	59324.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	4.44	16.6	18.83	22.12	1.64	0.63	1.99	4.26	3.34	1.0	4.52	4.39
Merged-chr15-78599342-3	chr15	78599237	78599437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2290.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	35.94	33.7	39.36	30.16	38.05	52.37	24.25	49.63	35.99	34.14	25.63	21.3
Merged-chr2-156864507-3	chr2	156864425	156864625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026124, intron 1 of 3)	B4A|SINE|B4	1403.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	23.82	14.59	25.1	24.53	42.14	39.51	25.91	27.08	50.55	39.16	50.25	17.54
Merged-chr15-10876522-3	chr15	10876443	10876643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	47492.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	109.43	101.11	124.93	111.81	123.55	130.13	94.0	152.19	166.0	126.03	183.91	104.94
Merged-chr2-130525561-4	chr2	130525372	130525572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 7 of 21)	B2_Mm2|SINE|B2	38277.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	8.88	13.33	8.56	18.5	20.46	21.32	14.28	10.79	23.6	28.12	28.14	27.57
Merged-chr16-18733320-3	chr16	18733244	18733444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43503.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	20.19	34.96	62.18	40.62	50.73	63.34	53.15	75.48	46.81	35.15	70.35	36.65
Merged-chr17-80373549-3	chr17	80373450	80373650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028385)	promoter-TSS (NR_028385)	-8.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	42.8	32.7	26.81	45.85	55.23	40.45	48.5	72.95	79.86	62.26	99.49	53.26
Merged-chr8-117482002-3	chr8	117481930	117482130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16245.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	58.15	55.59	50.2	55.91	81.0	85.61	42.19	61.65	91.07	83.35	107.53	41.66
Merged-chr1-7894863-1	chr1	7894763	7894963	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	805943.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	1.62	2.01	7.42	10.86	7.77	3.14	3.65	12.84	0.2	1.0	0.0	0.94
Merged-chr5-120511162-3	chr5	120511065	120511265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133221)	promoter-TSS (NM_133221)	-27.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	147.79	141.36	143.18	107.39	150.55	206.02	93.34	130.32	202.79	181.76	260.79	79.26
Merged-chr2-129100998-3	chr2	129100930	129101130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009086)	promoter-TSS (NM_009086)	34.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	56.13	51.06	62.18	39.01	63.82	69.61	38.2	53.13	65.69	59.75	84.92	44.8
Merged-chr11-115001681-3	chr11	115001541	115001741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134158, exon 1 of 4)	5' UTR (NM_134158, exon 1 of 4)	239.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	10.5	16.6	10.84	11.26	40.09	42.96	19.93	39.11	31.08	25.11	61.81	42.29
Merged-chr15-38299996-3	chr15	38299895	38300095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357677)	promoter-TSS (NM_001357677)	-95.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	44.82	40.5	35.94	30.57	48.68	43.59	52.48	35.1	74.94	49.71	61.81	49.5
Merged-chr19-6969814-3	chr19	6969718	6969918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-4.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	33.52	32.2	27.95	19.31	40.09	45.15	15.28	22.43	38.94	40.17	61.3	26.0
Merged-chr5-123863204-3	chr5	123863090	123863290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030701)	TTS (NM_030701)	2326.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	54.51	56.59	63.89	55.5	60.14	99.09	40.52	52.71	66.48	48.7	69.85	39.47
Merged-chr7-12834907-5	chr7	12834828	12835028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360576, exon 1 of 8)	5' UTR (NM_001360576, exon 1 of 8)	167.0	NM_001360576	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	28.67	28.67	19.4	43.44	45.41	35.12	41.52	37.35	45.43	53.22	90.95	33.83
Merged-chr13-113589730-3	chr13	113589630	113589830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28834.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	126.39	117.21	201.37	192.65	234.42	243.65	211.26	257.41	186.66	214.9	301.49	139.4
Merged-chr11-68655755-3	chr11	68655672	68655872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36143.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	41.59	45.78	98.12	69.98	66.27	83.41	101.98	92.58	82.61	73.31	104.52	70.48
Merged-chr1-137898513-3	chr1	137898426	137898626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67929.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	49.67	63.39	84.43	59.12	72.41	51.43	55.8	88.18	74.54	54.73	67.33	36.97
Merged-chr16-94312788-3	chr16	94312682	94312882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	781.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	42.8	36.97	38.22	23.33	60.14	58.01	44.51	39.62	70.81	62.26	90.45	38.22
Merged-chr5-117417171-3	chr5	117417071	117417271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	MTC|LTR|ERVL-MaLR	3169.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	67.43	53.07	106.1	78.43	78.96	76.51	88.03	77.16	107.39	109.96	142.71	88.97
Merged-chr2-128870924-3	chr2	128870826	128871026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	6994.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	31.5	21.88	21.68	29.76	41.73	75.57	61.45	53.22	35.6	41.17	48.74	19.42
Merged-chr3-88403657-3	chr3	88403531	88403731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025928, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	6766.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	55.72	46.28	65.03	58.72	85.91	72.75	39.86	62.72	77.89	63.27	82.91	61.4
Merged-chr4-128733712-3	chr4	128733616	128733816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6145.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	102.16	115.45	160.87	150.02	109.23	144.56	111.61	159.67	113.1	110.46	185.42	93.98
Merged-chrX-12165324-3	chrX	12165198	12165398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4943.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	25.44	32.7	10.27	26.95	30.27	34.81	28.23	27.28	33.83	34.65	27.64	17.54
Merged-chr6-97463921-3	chr6	97463833	97464033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-4647.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	57.74	63.39	63.32	84.86	56.05	68.67	107.96	82.15	78.09	86.36	123.11	64.53
Merged-chr5-31202350-3	chr5	31202228	31202428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175311)	promoter-TSS (NM_175311)	-25.0	NM_175311	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	136.08	142.62	138.05	139.97	147.28	183.13	124.9	129.56	195.9	228.46	253.25	124.37
Merged-chr6-122575905-3	chr6	122575841	122576041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	22132.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	43.61	44.27	47.35	22.12	57.27	76.83	37.54	28.46	31.27	53.22	44.72	17.86
Merged-chr1-92934495-4	chr1	92934408	92934608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	100.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	72.28	80.24	81.58	114.63	89.18	127.0	87.36	98.64	79.07	123.02	118.59	83.33
Merged-chr11-107189349-3	chr11	107189240	107189440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161329)	promoter-TSS (NM_001161329)	41.0	NM_133702	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	95.3	101.87	60.47	65.16	82.23	92.82	29.23	48.93	112.9	121.01	83.41	77.38
Merged-chr9-66887027-3	chr9	66886957	66887157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	32648.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	88.43	74.45	119.8	96.93	69.14	89.05	68.76	79.32	93.82	89.88	104.52	67.35
Merged-chr16-84990085-3	chr16	84990002	84990202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	17891.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	35.53	37.23	47.35	55.1	49.09	50.8	54.48	86.05	42.68	27.62	64.82	33.21
Merged-chr10-41519949-1	chr10	41519849	41520049	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016898, intron 1 of 5)	CpG	449.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	25.44	32.45	22.82	27.35	20.46	19.13	16.94	22.68	23.21	15.57	20.1	22.56
Merged-chr10-95844049-3	chr10	95843952	95844152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-96611.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	23.42	15.85	25.1	17.29	21.68	15.37	14.62	29.64	40.52	18.58	24.62	17.86
Merged-chr4-59003139-3	chr4	59003038	59003238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033165)	promoter-TSS (NM_001033165)	-55.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	62.99	45.53	79.29	67.97	71.59	82.78	33.22	83.83	110.54	122.51	139.69	77.06
Merged-chr4-117289349-5	chr4	117289226	117289426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310731, exon 1 of 11)	5' UTR (NM_001310731, exon 1 of 11)	129.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	18.57	22.64	20.54	16.89	14.73	26.34	17.61	18.73	27.73	42.68	30.15	28.19
Merged-chr16-27387882-3	chr16	27387775	27387975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1081.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	26.25	24.65	23.39	37.4	14.73	21.01	17.27	25.71	26.36	37.66	41.2	17.54
Merged-chr17-69181403-3	chr17	69181278	69181478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22022.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	130.83	142.11	158.59	163.7	115.78	171.52	126.22	133.46	212.42	185.28	221.59	124.68
Merged-chr5-120503265-1	chr5	120503165	120503365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023625, intron 1 of 11)	CpG	358.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	15.34	17.1	16.54	8.85	7.77	19.76	24.58	10.79	18.88	20.59	13.57	17.54
Merged-chr12-31950438-3	chr12	31950355	31950555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361928)	promoter-TSS (NM_001361928)	-210.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	276.2	279.45	298.92	320.55	298.24	374.41	278.69	315.28	380.59	410.22	441.18	248.11
Merged-chr11-5542299-3	chr11	5542180	5542380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-63.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	73.09	76.46	79.86	75.61	96.14	101.91	57.8	91.12	123.13	113.48	158.78	65.47
Merged-chr13-29984932-3	chr13	29984853	29985053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-562.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	15.75	25.66	18.83	19.71	26.18	36.37	25.24	32.02	40.52	52.72	70.35	35.71
Merged-chr10-8874823-3	chr10	8874709	8874909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11261.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	39.57	22.64	25.1	24.13	37.23	50.8	25.24	41.1	44.45	29.62	48.74	38.22
Merged-chr7-19876940-3	chr7	19876835	19877035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11030.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	45.63	41.75	39.93	24.13	68.73	75.26	33.22	35.92	80.25	108.45	73.36	57.33
Merged-chr5-90696285-3	chr5	90696184	90696384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55757.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	92.47	65.4	107.25	154.85	100.64	92.5	164.42	147.79	82.02	81.34	124.62	62.34
Merged-chr5-105623044-3	chr5	105622988	105623188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76881.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	59.36	45.78	61.04	65.96	72.0	63.34	44.18	63.42	67.07	51.21	78.39	44.48
Merged-chr1-172082734-3	chr1	172082640	172082840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	9.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	52.9	44.52	42.78	51.08	69.96	57.07	41.85	52.49	90.67	96.91	110.55	50.75
Merged-chr13-58128807-5	chr13	58128718	58128918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-262.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	44.82	63.13	71.31	57.92	54.41	53.93	54.14	43.46	64.91	101.43	54.77	61.09
Merged-chr11-82022839-3	chr11	82022722	82022922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12755.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	53.3	33.96	79.86	72.8	57.68	100.97	44.84	35.72	48.98	58.24	55.78	38.53
Merged-chr6-125039700-3	chr6	125039599	125039799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-149.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	133.25	90.3	81.58	109.8	119.05	143.3	67.43	86.13	161.48	138.58	131.65	97.74
Merged-chr3-136671067-7	chr3	136670914	136671114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	CpG	948.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	13.33	14.59	10.84	14.48	15.96	14.42	20.93	15.06	21.83	22.09	27.13	24.43
Merged-chr12-116435463-3	chr12	116435380	116435580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30078.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	20.59	24.4	35.37	30.16	30.27	32.61	38.53	38.75	80.25	66.28	87.43	52.94
Merged-chr13-64402115-3	chr13	64402031	64402231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30422.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	53.3	37.48	76.44	81.24	72.41	65.22	86.03	123.28	57.83	38.66	96.48	58.89
Merged-chr5-99214678-3	chr5	99214571	99214771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38256.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	195.44	186.89	188.82	181.79	144.0	209.47	143.17	191.24	179.77	199.34	181.9	104.63
Merged-chr2-14631813-3	chr2	14631701	14631901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	27495.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	80.36	94.07	85.0	99.75	103.91	114.14	95.0	109.35	98.54	108.96	126.12	67.67
Merged-chr5-135934676-3	chr5	135934559	135934759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-18.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	44.82	38.74	61.61	43.44	60.96	62.09	29.23	40.79	81.04	82.35	86.93	46.99
Merged-chr4-141873868-2	chr4	141873751	141873951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1069.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.27	12.32	14.26	20.11	8.18	11.29	5.65	7.26	16.13	10.54	18.59	16.6
Merged-chr2-148489117-3	chr2	148489022	148489222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-45587.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	63.8	33.96	42.21	65.16	68.32	61.46	35.87	81.25	68.45	54.73	73.86	42.92
Merged-chr17-57290963-3	chr17	57290875	57291075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11875.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	55.72	63.13	33.09	33.78	54.41	94.7	49.83	44.16	88.51	81.84	50.75	36.34
Merged-chr9-119937572-3	chr9	119937486	119937686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028976)	promoter-TSS (NM_028976)	-20.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	66.63	69.42	51.91	82.85	77.73	91.88	39.2	61.77	114.87	111.97	107.03	52.32
Merged-chr11-68852643-1	chr11	68852543	68852743	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023668, intron 1 of 8)	CpG	488.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	28.67	19.12	9.7	12.87	18.41	22.26	12.29	13.43	35.8	27.11	38.69	21.62
Merged-chr9-65031604-3	chr9	65031493	65031693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-865.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	36.75	31.44	35.37	29.36	33.55	42.33	30.23	15.45	46.22	41.67	53.77	29.13
Merged-chr11-74830440-3	chr11	74830339	74830539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-485.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	166.77	161.98	217.34	128.3	158.32	237.37	150.47	162.84	220.88	232.47	241.19	95.23
Merged-chr4-132510537-3	chr4	132510440	132510640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-84.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	116.29	104.13	83.29	100.95	126.0	138.29	84.7	91.26	177.02	157.16	161.3	97.74
Merged-chr12-119370072-3	chr12	119369986	119370186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73324.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	50.07	25.4	61.61	43.44	39.68	49.54	30.23	56.97	46.81	43.68	39.7	21.3
Merged-chr1-172633065-3	chr1	172632956	172633156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-82.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	191.0	151.67	197.38	176.57	188.19	224.2	154.13	214.37	257.66	259.09	353.75	145.98
Merged-chr3-121815178-4	chr3	121815126	121815326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355756)	promoter-TSS (NM_001355756)	76.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	34.73	26.66	24.53	20.91	35.59	38.57	37.87	38.38	35.21	46.7	61.3	32.27
Merged-chr13-99288078-3	chr13	99287960	99288160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56618.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	21.4	23.9	50.77	26.14	18.0	15.99	22.92	23.86	44.06	35.65	35.17	24.12
Merged-chr2-35463598-3	chr2	35463489	35463689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-2140.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	42.4	40.24	59.9	56.71	55.23	50.17	25.58	45.36	67.66	44.19	78.89	34.15
Merged-chr3-69634171-3	chr3	69634049	69634249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35189.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	35.53	25.66	43.35	53.89	44.59	55.82	64.11	71.33	38.16	36.15	41.71	23.81
Merged-chr6-72439127-3	chr6	72439025	72439225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046011, exon 1 of 1)	non-coding (NR_046011, exon 1 of 1)	433.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	127.6	167.27	137.48	95.72	92.46	194.73	72.08	99.93	205.93	213.9	160.79	96.49
Merged-chr10-42762332-3	chr10	42762234	42762434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	838.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	19.79	21.63	17.11	15.69	24.55	60.52	29.9	15.64	23.6	29.12	32.66	15.35
Merged-chr3-129878564-3	chr3	129878459	129878659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-47.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	37.55	28.93	25.67	35.39	44.18	54.56	28.9	45.62	57.24	69.29	69.85	33.83
Merged-chr7-19003310-3	chr7	19003204	19003404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	-761.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	44.01	38.74	42.21	32.98	40.5	32.93	22.92	27.95	63.92	34.14	58.79	47.62
Merged-chr4-43031452-3	chr4	43031331	43031531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023231)	promoter-TSS (NM_023231)	-47.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	46.84	29.43	35.37	43.44	51.55	37.0	31.89	43.21	48.98	45.69	66.83	43.86
Merged-chr6-143100200-3	chr6	143100089	143100289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-37.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	87.62	79.48	67.31	78.43	117.41	130.45	64.77	115.51	150.86	143.1	168.83	73.3
Merged-chr3-19188203-3	chr3	19188136	19188336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356295)	promoter-TSS (NM_001356295)	-59.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	104.58	77.47	112.38	122.27	141.96	131.7	132.54	191.24	177.02	157.16	272.35	103.69
Merged-chr3-19311363-3	chr3	19311385	19311585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122759)	promoter-TSS (NM_001122759)	-163.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	54.51	50.56	41.64	36.2	46.64	31.67	53.15	68.27	68.25	72.81	81.4	53.26
Merged-chr9-107547243-3	chr9	107547116	107547316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053253)	promoter-TSS (NM_053253)	-94.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	41.59	29.43	26.81	28.56	35.18	33.55	26.91	22.77	32.45	28.62	31.15	22.87
Merged-chr5-97111748-3	chr5	97111649	97111849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-153.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	90.85	126.77	91.84	113.82	110.05	143.93	107.29	88.49	121.16	129.54	147.73	71.74
Merged-chr1-165651378-3	chr1	165651273	165651473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16832.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	16.96	11.07	23.96	22.52	40.91	24.15	36.87	51.59	26.55	24.1	40.7	27.88
Merged-chr11-69429541-3	chr11	69429449	69429649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 76 of 85)	intron (NM_001081330, intron 76 of 85)	-15874.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	21.8	27.17	30.8	34.19	29.05	43.59	23.58	39.22	47.4	41.67	46.23	32.27
Merged-chr8-4325191-3	chr8	4325099	4325299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010485)	promoter-TSS (NM_010485)	-11.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	179.29	156.7	139.76	153.64	196.37	213.54	135.19	204.39	228.16	217.41	332.14	126.56
Merged-chr19-28917994-3	chr19	28917883	28918083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45937.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	76.72	109.16	111.24	90.09	76.91	136.72	77.06	101.27	192.16	170.21	200.49	85.52
Merged-chr15-41612419-3	chr15	41612309	41612509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	MIR3|SINE|MIR	163306.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	175.25	193.17	186.54	205.93	239.33	215.11	187.01	259.66	261.2	264.61	305.01	143.79
Merged-chr9-41068074-3	chr9	41067983	41068183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	MLT1E3|LTR|ERVL-MaLR	11423.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	51.69	41.75	61.04	68.78	39.68	36.37	33.22	56.13	26.95	25.11	22.11	17.54
Merged-chr13-67451598-3	chr13	67451518	67451718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	6.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	26.65	26.66	32.52	34.19	36.0	24.46	31.56	37.68	40.12	43.68	62.31	23.81
Merged-chr1-24100404-3	chr1	24100277	24100477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-36.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	86.01	71.94	55.9	68.78	127.64	84.35	93.67	95.78	99.72	79.83	119.59	48.56
Merged-chr15-76576495-4	chr15	76576417	76576617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172960, intron 1 of 14)	CpG	158.0	NR_073123	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	48.46	56.34	40.5	70.79	46.23	65.54	77.73	47.86	51.53	64.77	56.78	54.51
Merged-chr8-4613730-1	chr8	4613630	4613830	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	560.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	4.44	13.08	7.99	1.61	15.14	11.92	7.64	9.76	7.47	11.05	13.57	12.53
Merged-chr2-11501456-3	chr2	11501346	11501546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	CpG	644.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	99.33	110.92	129.49	116.24	126.0	153.96	136.85	157.91	141.22	134.06	216.57	85.52
Merged-chrX-137038243-3	chrX	137038141	137038341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082412)	promoter-TSS (NM_001082412)	61.0	NM_001082412	67062.0	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	18.17	19.62	23.39	21.72	31.91	24.46	36.54	26.83	20.46	28.12	22.61	22.87
Merged-chr9-41161623-3	chr9	41161520	41161720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3558.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	59.36	33.7	21.68	29.76	46.23	98.46	64.11	43.93	152.04	135.57	107.53	42.92
Merged-chr6-55203350-3	chr6	55203268	55203468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-15.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	20.19	18.36	29.66	39.42	39.68	22.89	29.9	32.78	35.8	44.19	67.84	28.51
Merged-chr12-76194704-3	chr12	76194606	76194806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-17447.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	37.96	24.65	40.5	29.76	23.32	48.6	26.24	39.11	28.91	37.16	23.11	32.89
Merged-chr3-127410389-1	chr3	127410289	127410489	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-1331.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.81	0.5	2.28	0.8	0.0	0.0	0.0	3.0	18.29	8.03	14.57	6.27
Merged-chr9-123717681-3	chr9	123717602	123717802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-77.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	135.68	152.17	72.45	119.45	120.28	151.14	70.09	90.0	198.85	188.29	174.36	98.68
Merged-chr7-45716251-3	chr7	45716150	45716350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	-1043.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	78.34	76.46	104.96	105.78	103.91	98.78	106.29	126.34	103.46	84.35	145.72	94.29
Merged-chr7-19871404-3	chr7	19871305	19871505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10106.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	69.45	64.14	75.87	106.18	72.82	84.98	57.47	100.68	99.13	77.32	71.86	54.82
Merged-chr2-132103567-3	chr2	132103474	132103674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	41534.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	35.13	57.35	32.52	21.32	41.73	95.64	37.54	37.57	64.51	59.75	51.76	28.82
Merged-chr5-139791923-2	chr5	139791797	139791997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	CpG	361.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	34.73	26.91	34.23	41.83	31.09	44.53	34.88	33.76	36.58	34.14	38.19	20.68
Merged-chr1-88652808-3	chr1	88652714	88652914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	49377.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	72.28	60.87	86.71	81.24	62.59	59.89	56.47	83.92	60.97	45.69	69.34	56.39
Merged-chr16-91355403-3	chr16	91355329	91355529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17354.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	142.14	121.99	155.73	162.89	140.73	202.57	141.84	187.6	168.17	198.33	218.08	101.81
Merged-chr2-120652998-3	chr2	120652903	120653103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43408.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	34.73	33.45	63.89	60.73	39.27	28.22	53.15	57.34	51.14	40.67	51.76	51.69
Merged-chrX-71050066-3	chrX	71049956	71050156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256048)	promoter-TSS (NM_001256048)	-200.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	33.11	46.53	50.77	47.46	39.27	43.59	23.58	45.95	50.94	53.22	46.23	31.64
Merged-chr2-52523285-3	chr2	52523215	52523415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	35296.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	44.82	49.8	93.55	97.33	65.05	81.53	90.35	95.05	83.79	70.8	80.9	44.17
Merged-chr6-134425380-1	chr6	134425280	134425480	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	10952.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	18.57	13.58	15.97	27.75	28.64	27.28	30.23	24.62	19.47	41.17	40.2	27.25
Merged-chr11-115628252-3	chr11	115628166	115628366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	29.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	150.21	147.4	126.64	131.52	184.1	180.3	153.13	130.23	199.25	202.35	222.6	113.72
Merged-chr8-14824647-1	chr8	14824547	14824747	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-63889.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	2.01	5.7	0.4	1.64	0.0	4.65	2.89	27.34	20.59	33.16	14.72
Merged-chr15-62130555-3	chr15	62130462	62130662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88889.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	48.86	42.51	58.76	40.62	65.05	68.67	57.47	50.61	66.48	38.16	58.79	33.52
Merged-chr9-108490702-3	chr9	108490584	108490784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168371)	promoter-TSS (NM_001168371)	8.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	65.41	63.89	58.76	60.73	74.46	70.55	30.89	45.67	85.95	81.34	89.94	49.18
Merged-chr8-22935795-3	chr8	22935678	22935878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081149, exon 17 of 18)	exon (NM_001081149, exon 17 of 18)	-39058.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	27.46	19.37	67.88	32.18	51.14	49.23	44.84	69.59	41.3	37.66	74.87	29.45
Merged-chr6-11925850-3	chr6	11925754	11925954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029404)	promoter-TSS (NM_029404)	-27.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	33.11	30.94	34.8	33.38	47.05	39.51	38.2	63.17	52.12	50.21	70.35	38.85
Merged-chr2-6256433-3	chr2	6256330	6256530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43436.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	46.44	25.66	38.22	48.67	41.73	29.16	20.26	45.48	38.94	28.62	52.26	30.7
Merged-chr1-189688202-3	chr1	189688110	189688310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-124.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	203.92	193.93	243.58	269.07	253.24	244.9	207.94	327.51	323.36	263.61	425.6	172.61
Merged-chr18-52165025-3	chr18	52164919	52165119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41473.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	34.32	23.64	60.47	55.91	59.73	46.41	59.79	90.59	47.6	52.22	49.24	32.89
Merged-chr6-116013879-3	chr6	116013770	116013970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18865.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	26.25	29.68	41.64	41.02	48.68	36.69	34.88	55.23	59.01	47.7	53.77	43.23
Merged-chr2-166305165-3	chr2	166305075	166305275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31267.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	21.4	13.33	33.09	19.31	18.82	16.93	29.56	28.01	30.49	23.1	56.28	25.06
Merged-chr10-13832841-3	chr10	13832742	13832942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	36115.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	72.28	100.86	144.9	71.19	92.87	110.69	113.6	113.44	168.76	138.58	128.64	67.67
Merged-chr1-138982451-3	chr1	138982346	138982546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4789.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	35.94	24.4	42.78	37.81	38.46	35.12	19.27	41.02	45.63	48.7	48.24	26.63
Merged-chr5-149246197-3	chr5	149246082	149246282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18822.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	99.74	79.99	102.11	101.76	97.78	85.92	89.02	118.32	103.46	77.32	142.71	82.39
Merged-chr13-97869635-3	chr13	97869538	97869738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118526.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	21.8	21.63	32.52	27.75	15.96	21.01	13.62	31.04	28.91	29.12	41.2	15.98
Merged-chr4-59441440-3	chr4	59441285	59441485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-2752.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	35.13	41.75	27.38	34.99	36.82	31.67	29.9	35.02	40.52	30.13	38.19	25.06
Merged-chr9-64737704-3	chr9	64737609	64737809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	47.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	43.21	30.43	39.93	39.82	49.09	60.83	16.94	27.14	49.17	50.21	66.83	44.8
Merged-chr13-91807587-3	chr13	91807406	91807606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145453, intron 1 of 5)	CpG	190.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	42.4	59.36	56.48	51.88	43.77	40.14	82.71	58.43	44.65	54.73	62.31	41.04
Merged-chr10-77971994-3	chr10	77971883	77972083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2111.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	18.57	19.12	36.51	17.29	20.46	29.16	49.83	33.06	36.78	39.67	28.64	19.42
Merged-chr12-24601023-3	chr12	24600933	24601133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	20314.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	54.92	68.92	43.35	47.46	62.18	123.23	32.88	74.44	52.71	73.31	58.29	37.91
Merged-chr16-23314933-3	chr16	23314838	23315038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	24468.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	131.23	99.35	155.16	169.73	123.55	132.64	95.0	109.35	123.91	130.05	138.18	97.43
Merged-chr11-16637877-3	chr11	16637766	16637966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114337.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	49.67	72.94	79.29	85.27	96.14	79.96	102.97	96.7	132.57	113.48	147.23	85.21
Merged-chr3-97933465-3	chr3	97933358	97933558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3285.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	29.07	25.15	25.67	20.11	46.23	37.0	18.6	29.19	30.09	49.71	69.34	26.94
Merged-chr16-4626717-3	chr16	4626614	4626814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030205)	TTS (NM_030205)	-1768.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	30.28	19.87	26.81	37.0	32.73	16.31	38.53	41.5	35.21	33.14	50.25	30.39
Merged-chr6-39004081-3	chr6	39003997	39004197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	CR1_Mam|LINE|CR1	63489.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	65.01	39.49	78.72	87.68	60.14	52.37	66.1	90.39	44.45	58.75	61.81	39.16
Merged-chr10-93175474-3	chr10	93175363	93175563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	L1MC3|LINE|L1	12678.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	20.59	18.11	25.1	51.88	38.46	37.63	39.53	60.22	40.12	28.12	79.89	37.59
Merged-chr13-63642759-2	chr13	63642672	63642872	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69312.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.81	1.01	2.28	0.0	4.5	11.92	4.65	12.28	22.03	23.6	36.18	20.99
Merged-chr7-12922227-3	chr7	12922136	12922336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-75.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	220.47	205.25	239.02	270.28	292.92	306.05	200.63	258.59	315.49	286.7	389.93	195.48
Merged-chr13-23698452-3	chr13	23698342	23698542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178208)	promoter-TSS (NM_178208)	16.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	113.47	121.99	143.76	157.66	110.05	144.56	129.21	108.39	193.93	176.74	210.54	118.41
Merged-chr10-68378339-3	chr10	68378250	68378450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-57208.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	85.2	72.44	104.96	93.71	85.91	105.67	78.06	109.74	109.95	83.35	163.81	56.39
Merged-chr10-34128657-3	chr10	34128563	34128763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-691.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	89.64	73.19	124.36	102.16	74.05	138.29	96.0	94.88	108.18	60.25	73.86	34.46
Merged-chr17-65630268-3	chr17	65630169	65630369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9487.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	47.24	47.04	73.59	44.24	79.37	79.65	71.75	66.06	80.45	73.31	90.45	31.01
Merged-chr11-97946081-3	chr11	97946000	97946200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163608, intron 7 of 13)	MTD|LTR|ERVL-MaLR	40346.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	30.28	24.65	48.49	30.97	36.0	32.93	12.62	31.04	64.71	40.17	55.78	34.77
Merged-chr5-135689004-3	chr5	135688898	135689098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-147.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	232.18	224.36	199.09	217.19	261.83	370.64	213.25	226.32	323.95	376.58	373.85	198.92
Merged-chr11-82023918-3	chr11	82023821	82024021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11656.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	56.94	31.19	46.78	44.24	45.41	64.28	25.91	39.87	49.17	48.2	79.89	46.68
Merged-chr4-115828498-3	chr4	115828399	115828599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	407.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	51.28	50.56	48.49	51.48	54.0	71.81	50.49	51.62	79.07	55.23	89.94	34.77
Merged-chr11-26387373-3	chr11	26387291	26387491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277273, intron 1 of 13)	CpG	307.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	73.09	105.39	69.6	133.93	89.18	104.11	111.94	93.06	96.18	110.97	113.56	77.06
Merged-chr11-69664022-3	chr11	69663903	69664103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291058)	TTS (NM_001291058)	960.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	43.21	56.09	52.48	37.0	65.87	66.48	45.18	52.85	101.49	106.45	70.35	50.12
Merged-chr3-67587626-3	chr3	67587530	67587730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025813, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	4862.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	44.42	29.43	31.38	29.76	47.05	32.93	18.93	50.58	51.73	30.13	51.25	19.11
Merged-chr6-100357151-3	chr6	100357043	100357243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-69785.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	58.55	44.77	37.08	51.48	60.55	69.3	34.88	64.37	60.97	61.76	70.35	48.24
Merged-chr14-122261444-3	chr14	122261354	122261554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-27816.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	31.5	41.5	66.74	53.89	44.18	46.72	68.43	102.67	56.84	35.65	84.42	45.74
Merged-chr1-183094966-3	chr1	183094853	183095053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278218, intron 8 of 8)	intron (NM_001278218, intron 8 of 8)	52604.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	17.77	27.42	52.48	50.27	30.68	26.34	36.21	36.17	25.37	20.08	48.74	33.21
Merged-chr8-46551920-3	chr8	46551828	46552028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-141.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	222.9	226.12	268.69	215.18	280.24	330.19	232.85	276.7	295.43	302.27	347.72	189.21
Merged-chr2-160011515-3	chr2	160011401	160011601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5152.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	17.77	10.56	14.83	24.53	50.32	19.13	33.55	39.84	20.46	18.58	38.19	18.48
Merged-chr6-31176527-3	chr6	31176409	31176609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41965.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	14.13	22.13	14.26	21.72	22.5	26.97	12.29	20.36	29.5	22.09	28.64	24.43
Merged-chr6-100671234-3	chr6	100671155	100671355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181590)	promoter-TSS (NM_181590)	-98.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	97.31	103.63	122.65	78.83	105.14	111.95	76.07	88.88	125.29	135.57	136.17	76.44
Merged-chr6-145359697-2	chr6	145359635	145359835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27890.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	21.4	15.34	22.82	19.71	17.18	22.89	14.28	16.09	2.36	0.5	3.01	0.63
Merged-chr8-94704146-3	chr8	94704020	94704220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7878.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	54.92	61.88	84.43	86.47	69.14	84.04	45.84	67.68	108.97	85.86	107.03	83.02
Merged-chr2-25333115-3	chr2	25332986	25333186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	343.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	21.0	15.34	10.27	2.41	18.41	22.89	9.3	5.92	17.11	18.08	15.58	17.54
Merged-chr17-74440700-3	chr17	74440607	74440807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 5 of 8)	intron (NM_001033367, intron 5 of 8)	18401.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	96.91	105.14	135.2	133.53	51.14	66.79	43.18	50.86	59.2	63.27	56.78	30.39
Merged-chr19-56773628-1	chr19	56773528	56773728	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	40055.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.81	1.01	12.55	4.42	3.68	0.63	9.3	9.62	5.31	11.55	9.04	12.53
Merged-chr4-46196256-3	chr4	46196144	46196344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011728)	promoter-TSS (NM_011728)	67.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	46.84	53.58	53.05	69.58	49.09	49.54	65.11	64.65	56.65	47.2	61.3	39.47
Merged-chr10-127605133-1	chr10	127605033	127605233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16015.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	90.85	113.19	143.76	73.2	120.69	128.88	136.85	99.17	118.41	112.97	144.21	64.53
Merged-chr2-25272443-3	chr2	25272342	25272542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	-24.0	NM_023464	68475.0	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	77.53	56.09	66.74	72.4	94.91	90.62	53.48	66.67	135.91	95.9	97.48	72.99
Merged-chr12-85980175-3	chr12	85980070	85980270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	98871.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	28.67	25.4	48.49	40.62	39.68	42.96	25.58	35.97	39.73	37.66	70.85	27.88
Merged-chr2-113327718-3	chr2	113327615	113327815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285458)	promoter-TSS (NM_001285458)	-21.0	NM_001285458	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	69.45	63.39	88.42	96.13	121.5	121.35	109.95	135.06	111.52	125.53	184.41	84.27
Merged-chr17-74867047-3	chr17	74866952	74867152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138477.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	92.47	79.23	75.87	83.26	54.0	89.68	41.19	94.6	133.16	101.93	139.19	69.23
Merged-chr15-43477137-3	chr15	43477033	43477233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	-96.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	242.28	228.39	295.5	323.77	285.96	295.39	248.46	365.89	291.69	309.3	472.33	182.95
Merged-chr3-81134937-3	chr3	81134847	81135047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357746, intron 2 of 6)	intron (NM_001357746, intron 2 of 6)	98531.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	23.42	16.1	38.22	31.37	32.73	48.92	58.46	60.59	58.22	51.21	69.34	22.56
Merged-chr15-101256232-3	chr15	101256128	101256328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10618.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	15.34	16.1	15.4	23.73	30.68	21.32	26.24	19.57	25.37	30.13	31.66	27.25
Merged-chr9-70842507-3	chr9	70842399	70842599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	MER20|DNA|hAT-Charlie	92309.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	19.38	31.19	39.36	26.95	36.82	49.86	48.16	50.86	32.26	46.19	35.68	25.06
Merged-chr12-73901300-3	chr12	73901186	73901386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313920)	promoter-TSS (NM_001313920)	-38.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	27.05	34.71	29.66	21.72	50.73	50.49	35.54	41.02	45.63	42.18	49.24	26.94
Merged-chr10-42225307-3	chr10	42225192	42225392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	51450.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	46.84	25.15	52.48	66.77	69.14	49.86	46.84	66.48	35.4	53.22	49.75	48.24
Merged-chr11-53763763-3	chr11	53763645	53763845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-91.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	117.1	135.83	143.76	130.31	145.23	203.82	120.25	126.65	192.75	181.76	192.95	104.32
Merged-chr14-13981483-3	chr14	13981362	13981562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19610.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	32.71	23.14	22.82	37.81	22.91	29.79	16.61	36.62	33.44	26.11	33.67	24.43
Merged-chr15-63506091-1	chr15	63505991	63506191	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26483.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.42	2.52	3.42	2.82	2.86	4.7	7.31	14.13	1.97	5.02	4.52	3.45
Merged-chr9-106247886-3	chr9	106247774	106247974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	80.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	35.94	43.01	40.5	36.6	45.41	40.45	40.19	33.45	37.57	46.19	42.71	25.37
Merged-chr17-86963168-3	chr17	86963064	86963264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	53.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	78.74	78.48	41.64	80.44	90.82	86.23	70.09	83.41	103.26	95.9	110.55	53.57
Merged-chr3-35754540-3	chr3	35754435	35754635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151627, intron 1 of 31)	CpG	472.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	21.8	31.44	21.11	34.19	39.68	34.18	30.89	32.78	31.86	46.19	36.18	18.8
Merged-chr1-171018861-3	chr1	171018767	171018967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144559)	promoter-TSS (NM_144559)	-59.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	19.38	23.64	28.52	21.32	22.09	26.65	25.24	29.64	28.91	26.11	40.7	27.25
Merged-chr5-25499660-3	chr5	25499527	25499727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-170.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	128.0	120.48	120.94	118.25	102.28	115.39	111.28	94.99	164.82	146.61	199.99	102.12
Merged-chr6-35177487-3	chr6	35177404	35177604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027513)	promoter-TSS (NM_027513)	-112.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	18.98	34.96	51.91	51.88	37.23	64.6	71.42	46.37	44.84	56.24	59.29	29.45
Merged-chr6-83914765-2	chr6	83914660	83914860	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008717, intron 1 of 26)	CpG	407.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	18.17	21.13	20.54	36.2	20.46	23.52	41.52	17.8	11.8	11.05	22.61	22.56
Merged-chr7-98309542-3	chr7	98309440	98309640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025408)	promoter-TSS (NM_025408)	2.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	86.82	71.43	88.42	122.67	84.28	100.66	44.84	79.18	98.74	78.33	106.53	68.92
Merged-chr10-78244731-3	chr10	78244634	78244834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081055)	promoter-TSS (NM_001081055)	-92.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	89.64	75.46	75.87	63.15	81.0	113.83	59.46	96.48	112.9	114.98	145.22	52.32
Merged-chr14-121352445-1	chr14	121352345	121352545	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	26785.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.63	6.04	3.42	3.62	5.73	4.7	7.64	12.36	8.46	5.02	11.05	5.33
Merged-chr11-107242819-1	chr11	107242719	107242919	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-53438.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.81	4.78	8.56	12.07	3.27	4.08	15.94	8.86	8.26	3.01	7.03	2.19
Merged-chr1-135147843-1	chr1	135147743	135147943	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1009.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	36.75	38.48	58.19	47.46	48.68	57.38	35.87	45.25	71.2	46.19	65.32	44.48
Merged-chr13-76130093-2	chr13	76129992	76130192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081352, intron 18 of 43)	intron (NM_001081352, intron 18 of 43)	31358.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	17.77	18.61	21.68	14.48	16.77	22.58	15.94	34.23	5.7	4.02	5.53	1.88
Merged-chr19-41483202-3	chr19	41483105	41483305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-42047.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	23.42	19.87	2.28	18.1	41.32	35.75	15.94	15.81	29.7	31.13	34.67	15.35
Merged-chr2-27327181-3	chr2	27327065	27327265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-79862.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	29.48	30.18	41.64	30.16	54.41	36.69	32.55	56.8	30.88	19.08	47.74	21.62
Merged-chr8-116627378-3	chr8	116627283	116627483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	Lx8|LINE|L1	105608.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	16.56	24.9	23.96	29.36	35.59	29.79	15.94	26.66	49.17	41.17	35.17	23.81
Merged-chr7-24611335-3	chr7	24611226	24611426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-2.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	50.47	53.07	73.59	70.79	76.5	80.59	46.17	79.71	84.18	78.83	89.94	48.56
Merged-chr18-14783961-3	chr18	14783848	14784048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	703.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	30.28	20.63	17.68	23.33	18.82	18.19	28.23	33.93	25.18	20.08	40.2	22.56
Merged-chr5-24685761-3	chr5	24685669	24685869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-46.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	248.33	260.33	251.57	283.15	291.69	329.57	273.38	255.37	368.2	417.75	455.75	215.53
Merged-chr7-24902992-3	chr7	24902895	24903095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	9.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	37.96	34.21	39.36	24.94	26.59	27.59	28.57	37.15	37.96	33.64	29.65	24.75
Merged-chr11-78178004-3	chr11	78177891	78178091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-158.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	39.98	25.91	29.66	23.33	42.14	47.04	25.91	37.29	39.93	51.21	65.32	29.76
Merged-chr8-46140511-3	chr8	46140401	46140601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16355.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	51.28	36.22	78.15	71.19	58.91	55.5	48.16	75.67	52.71	77.83	81.4	42.29
Merged-chr2-60288802-3	chr2	60288705	60288905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4321.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	44.82	27.92	53.62	48.67	42.96	39.2	37.54	38.64	36.98	27.11	49.75	33.21
Merged-chr4-127043669-3	chr4	127043569	127043769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17485.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	27.46	22.13	43.35	29.76	24.14	26.34	17.27	19.37	40.12	40.67	31.15	19.42
Merged-chr2-43545896-3	chr2	43545807	43546007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-9418.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	20.19	20.88	33.66	41.02	36.82	17.56	18.93	44.8	23.6	21.59	26.13	34.15
Merged-chr18-36471730-3	chr18	36471643	36471843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-17248.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	39.98	27.42	38.22	26.14	47.05	63.34	30.89	54.5	64.51	54.23	56.78	34.15
Merged-chr17-27028619-3	chr17	27028508	27028708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	19.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	18.17	32.45	31.95	32.18	31.09	36.37	18.6	25.07	35.21	21.59	47.23	19.74
Merged-chr4-132353642-3	chr4	132353541	132353741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003270)	promoter-TSS (NR_003270)	45.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	55.32	79.73	54.19	54.3	45.0	84.98	38.86	31.46	64.12	65.78	51.76	31.95
Merged-chr4-130787711-3	chr4	130787580	130787780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4857.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	62.99	54.83	78.72	54.7	79.78	104.11	67.43	106.07	80.25	46.7	98.49	51.38
Merged-chr2-153558633-3	chr2	153558544	153558744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28673.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	26.65	29.43	35.94	20.51	26.59	49.54	26.91	17.94	48.19	50.21	49.75	21.62
Merged-chr16-25061867-1	chr16	25061767	25061967	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	2228.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	8.88	2.77	2.28	5.63	13.09	4.7	2.33	8.89	3.15	11.55	5.02	6.58
Merged-chr8-119344438-3	chr8	119344360	119344560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024219)	promoter-TSS (NM_024219)	-78.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	94.08	84.51	98.69	101.76	134.19	150.83	71.75	116.83	151.65	128.54	164.81	97.43
Merged-chr7-25680712-3	chr7	25680610	25680810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-70.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	136.89	145.89	132.35	109.8	118.64	190.03	87.69	82.91	190.39	202.35	205.01	101.5
Merged-chr5-34170949-3	chr5	34170862	34171062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1436.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	34.73	21.13	25.1	17.29	36.0	36.37	21.26	32.86	29.11	41.67	27.64	24.75
Merged-chr4-155774606-3	chr4	155774512	155774712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-51.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	25.04	13.83	18.83	15.69	22.09	21.95	10.63	28.18	33.04	28.62	35.68	15.66
Merged-chr11-75462495-3	chr11	75462389	75462589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030711, intron 1 of 2)	intron (NR_030711, intron 1 of 2)	950.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	27.46	33.2	31.38	20.91	33.14	51.43	28.57	33.03	45.83	48.2	60.8	54.2
Merged-chr10-85354523-1	chr10	85354423	85354623	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32291.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.0	0.0	2.41	1.64	1.88	1.99	0.36	79.07	66.78	81.4	46.05
Merged-chr6-140610319-3	chr6	140610229	140610429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12334.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	50.88	44.02	76.44	55.1	55.64	73.06	50.82	61.18	89.69	58.24	90.95	37.28
Merged-chr7-139388439-2	chr7	139388369	139388569	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-640.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	80.76	66.4	82.72	74.0	97.78	90.0	88.69	99.51	127.06	110.97	165.82	98.37
Merged-chr2-140395338-3	chr2	140395226	140395426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013802)	promoter-TSS (NM_001013802)	-104.0	NM_001013802	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	37.15	29.18	20.54	33.38	149.73	176.54	92.01	204.2	47.4	54.73	83.41	44.48
Merged-chr17-85395701-3	chr17	85395606	85395806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028576, intron 6 of 10)	intron (NM_028576, intron 6 of 10)	222690.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	64.2	56.85	90.7	94.52	78.96	134.84	85.7	132.87	145.55	119.0	158.78	85.21
Merged-chr16-91601965-3	chr16	91601852	91602052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4272.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	41.19	25.91	58.19	58.72	60.14	38.57	46.5	64.93	53.5	50.21	65.83	50.12
Merged-chr12-69372561-3	chr12	69372456	69372656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007481, exon 2 of 2)	5' UTR (NM_007481, exon 2 of 2)	406.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	28.27	26.16	29.09	33.38	22.09	25.09	38.2	28.74	45.04	43.18	68.84	37.59
Merged-chr4_GL456216_random-16096-1	chr4_GL456216_random	15996	16196	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033326, exon 1 of 7)	5' UTR (NM_001033326, exon 1 of 7)	215.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	196.88	261.6	239.18	129.38
Merged-chr10-128549231-3	chr10	128549073	128549273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-5.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	101.76	100.11	87.85	80.84	119.05	127.94	67.76	79.68	109.56	134.56	144.21	69.55
Merged-chr2-59184687-3	chr2	59184595	59184795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23845.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	44.42	30.69	54.19	46.66	61.77	68.99	40.19	58.91	80.05	63.27	91.95	47.62
Merged-chr15-76657009-3	chr15	76656920	76657120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276321)	promoter-TSS (NM_001276321)	-119.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	42.8	35.72	38.79	41.02	40.5	47.66	29.23	32.27	43.86	52.72	62.81	28.51
Merged-chr13-41484175-1	chr13	41484075	41484275	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	3185.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	10.09	2.52	3.42	2.01	4.09	10.66	1.99	9.93	3.74	10.04	1.0	1.25
Merged-chr4-125116694-3	chr4	125116601	125116801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11180.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	94.49	91.81	112.38	106.99	82.64	89.05	101.98	108.36	90.48	79.33	144.71	61.09
Merged-chr1-13373473-3	chr1	13373412	13373612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	CpG	571.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	26.25	38.23	24.53	23.33	33.55	40.14	25.58	28.07	34.22	43.18	34.17	26.31
Merged-chr11-115699459-3	chr11	115699355	115699555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	79.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	99.33	96.59	140.9	124.28	147.28	132.33	153.8	128.64	152.43	130.55	196.97	118.73
Merged-chr7-19824334-3	chr7	19824230	19824430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1575.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	109.43	97.34	111.81	80.04	124.37	129.82	99.65	90.79	142.21	116.49	154.26	55.13
Merged-chr6-120454839-3	chr6	120454742	120454942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-8355.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	60.17	46.78	71.31	44.24	78.14	108.81	79.39	96.14	104.83	122.51	107.53	58.89
Merged-chr15-17603801-1	chr15	17603701	17603901	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	765826.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	2.28	4.83	2.45	5.02	7.64	12.79	6.29	2.51	4.02	4.07
Merged-chr18-60767165-5	chr18	60767046	60767246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7450.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	13.33	13.08	28.52	21.72	24.14	29.16	36.87	41.8	24.78	18.08	23.11	26.94
Merged-chr5-29839631-3	chr5	29839537	29839737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-103701.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	27.05	26.66	24.53	33.78	30.68	27.59	31.89	28.18	39.93	42.68	51.25	20.36
Merged-chr5-65991376-3	chr5	65991274	65991474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027961, intron 4 of 6)	ORR1B1|LTR|ERVL-MaLR	12911.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	49.67	67.16	39.36	34.99	67.09	162.43	58.79	55.68	94.8	108.96	109.54	42.6
Merged-chr9-32516894-3	chr9	32516843	32517043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	24509.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	87.22	74.45	102.11	117.44	65.46	82.16	66.1	80.83	48.58	41.67	66.83	34.46
Merged-chr17-84408931-3	chr17	84408829	84409029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 22 of 37)	intron (NM_183021, intron 22 of 37)	57279.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	30.69	32.45	29.09	16.49	21.68	27.28	7.97	13.18	34.81	22.09	39.19	25.06
Merged-chr6-145139986-3	chr6	145139863	145140063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-5512.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	30.28	32.7	39.93	41.43	43.77	32.61	33.55	47.78	44.25	31.63	33.67	30.7
Merged-chrX-95444966-3	chrX	95444848	95445048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175179)	promoter-TSS (NM_175179)	-108.0	NM_175179	72345.0	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	66.22	80.74	49.06	57.11	61.37	70.55	70.75	81.95	103.65	106.95	94.47	46.05
Merged-chr5-143113058-3	chr5	143112931	143113131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-11.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	64.2	68.67	62.75	44.24	66.27	77.14	29.23	42.79	85.17	96.91	101.0	59.21
Merged-chr5-105052306-3	chr5	105052204	105052404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029509, intron 1 of 9)	intron (NM_029509, intron 1 of 9)	1257.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	27.46	16.6	39.93	28.96	32.32	35.12	12.62	31.18	38.35	43.68	37.69	23.49
Merged-chr2-164460915-3	chr2	164460841	164461041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	-30.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	77.93	75.21	65.03	76.82	75.28	102.22	53.15	73.09	110.93	81.34	114.06	69.86
Merged-chr18-61401855-3	chr18	61401748	61401948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	24.63	26.41	42.78	38.61	45.82	30.73	22.59	40.35	34.22	19.08	41.2	14.72
Merged-chr17-46111008-3	chr17	46110909	46111109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026768)	promoter-TSS (NM_026768)	5.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	23.02	24.9	24.53	22.52	28.23	33.24	11.29	22.37	47.99	52.72	42.21	20.99
Merged-chr11-82015292-3	chr11	82015145	82015345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-20332.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	47.65	34.71	39.93	24.13	52.37	55.5	27.24	26.78	44.84	50.21	35.17	20.99
Merged-chr4-117126213-3	chr4	117126110	117126310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	-485.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	67.84	39.49	49.63	66.36	127.23	132.01	75.4	128.5	96.18	90.88	121.1	50.75
Merged-chr8-54529563-3	chr8	54529478	54529678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029701, intron 1 of 4)	CpG	420.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	49.67	36.72	46.21	49.47	60.14	85.61	79.39	115.65	80.84	77.32	144.71	54.51
Merged-chr9-22156790-3	chr9	22156710	22156910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-36.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	115.08	101.11	161.44	117.44	146.05	157.1	107.96	142.4	182.53	165.69	273.35	117.47
Merged-chr15-55072111-3	chr15	55072007	55072207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081288)	promoter-TSS (NM_001081288)	45.0	NM_001081288	319944.0	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	58.95	43.51	55.33	49.47	67.91	58.95	64.77	74.38	56.25	70.29	88.94	54.2
Merged-chr8-119426613-3	chr8	119426507	119426707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10555.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	32.71	19.62	41.07	18.9	41.73	25.09	23.58	31.07	48.19	42.68	39.7	39.47
Merged-chr13-23622507-3	chr13	23622396	23622596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015787)	promoter-TSS (NM_015787)	62.0	NM_015787	50709.0	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	121.95	100.86	96.41	127.9	122.32	113.2	99.98	112.88	114.08	105.94	199.99	83.33
Merged-chr5-86071751-3	chr5	86071635	86071835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019992)	promoter-TSS (NM_019992)	-11.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	30.28	15.34	26.81	18.9	30.27	19.44	19.27	21.98	34.81	30.63	53.77	16.6
Merged-chr11-95310346-3	chr11	95310252	95310452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195004)	promoter-TSS (NM_001195004)	-64.0	NR_155298	102640811.0	Mm.440938	NR_155298		Gm11520	-	predicted gene 11520	ncRNA	142.54	136.08	112.38	113.82	113.73	154.9	72.41	72.0	157.74	190.3	144.21	81.76
Merged-chr4-40948413-3	chr4	40948313	40948513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009736)	promoter-TSS (NM_009736)	-119.0	NM_001171739	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	225.32	224.11	236.74	239.71	244.64	268.73	192.33	216.59	258.45	324.36	284.41	181.38
Merged-chr16-91855924-3	chr16	91855826	91856026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	75704.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	19.38	6.79	22.25	14.48	24.14	16.93	14.95	27.36	17.7	21.09	20.6	11.9
Merged-chr17-94864832-3	chr17	94864713	94864913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024731)	promoter-TSS (NM_001024731)	-105.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	63.8	53.83	59.9	78.43	78.55	74.0	67.76	72.48	88.51	75.32	123.61	72.36
Merged-chr1-39493283-3	chr1	39493186	39493386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14531.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	56.94	47.29	49.63	50.27	29.05	36.06	35.21	35.58	37.57	29.12	46.23	17.23
Merged-chr16-95990943-3	chr16	95990841	95991041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	19.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	89.24	77.47	85.57	70.38	95.73	91.25	65.44	95.05	126.67	105.44	130.14	88.34
Merged-chr5-136116644-3	chr5	136116553	136116753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-38.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	72.28	62.13	69.03	67.17	61.77	105.36	44.18	62.55	92.64	113.48	85.92	50.75
Merged-chr1-152904671-3	chr1	152904566	152904766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2020.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	76.72	82.75	107.25	58.32	106.78	110.69	49.16	78.39	104.44	95.9	119.59	48.87
Merged-chr17-35257572-3	chr17	35257475	35257675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5519.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	20.19	18.86	20.54	15.69	26.18	35.12	16.61	20.78	51.93	43.18	47.23	40.1
Merged-chr17-12921275-3	chr17	12921188	12921388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290712, intron 6 of 10)	intron (NM_001290712, intron 6 of 10)	-1569.0	NR_028479	100303746.0		NR_028479		Snora20	MBI-125	small nucleolar RNA, H/ACA box 20	snoRNA	34.73	16.1	25.1	33.78	51.14	33.24	28.23	52.4	47.21	31.63	49.24	32.89
Merged-chr1-7398070-3	chr1	7397957	7398157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	309137.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	209.17	252.79	265.83	278.32	337.92	313.89	278.36	321.06	334.17	317.83	386.91	196.1
Merged-chr15-96709847-3	chr15	96709759	96709959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10131.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	151.42	154.94	112.95	111.81	148.91	189.08	110.95	97.49	183.12	196.32	173.36	95.23
Merged-chr11-121741688-3	chr11	121741591	121741791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39264.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	70.66	50.56	59.33	44.24	96.55	114.14	40.52	49.32	101.69	76.32	98.49	58.27
Merged-chr6-49264038-3	chr6	49263946	49264146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347209)	promoter-TSS (NM_001347209)	6.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	73.89	92.81	73.02	52.69	70.37	97.21	56.8	84.76	132.76	97.91	116.58	85.84
Merged-chr5-105718464-3	chr5	105718355	105718555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	17645.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	137.69	95.33	137.48	162.49	144.41	143.3	127.89	157.71	149.48	140.09	202.0	88.03
Merged-chrUn_JH584304-50105-1	chrUn_JH584304	50005	50205	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9584.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.05	11.55	15.58	15.66
Merged-chr11-51584758-3	chr11	51584666	51584866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	9.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	112.26	115.45	121.51	77.22	124.78	139.54	55.47	110.75	146.73	131.05	148.73	86.15
Merged-chr6-83634220-3	chr6	83634119	83634319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21897.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	40.78	25.4	79.29	61.94	45.0	34.49	79.72	90.67	40.71	21.59	57.28	41.04
Merged-chr13-42258660-3	chr13	42258564	42258764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42812.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	46.44	42.76	70.17	57.51	71.59	91.88	67.76	64.82	90.87	84.86	83.91	46.68
Merged-chr5-101766473-3	chr5	101766378	101766578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1348.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	28.27	30.43	46.78	28.96	40.91	27.28	34.88	36.39	30.68	26.11	46.23	17.86
Merged-chr4-22357620-3	chr4	22357510	22357710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104378)	promoter-TSS (NR_104378)	67.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	94.49	105.89	130.06	117.04	121.09	101.6	150.47	156.14	107.0	98.91	159.79	94.29
Merged-chr19-24174179-2	chr19	24174103	24174303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-14.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	59.76	43.51	63.32	44.24	0.0	0.0	0.33	0.36	22.42	14.56	18.09	6.58
Merged-chr13-98819288-3	chr13	98819184	98819384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	16.15	13.83	23.39	16.89	13.91	20.7	16.94	31.79	37.17	19.08	30.65	19.11
Merged-chr17-46160925-3	chr17	46160813	46161013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-119.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	165.15	178.33	196.24	168.12	241.78	220.44	137.52	177.98	197.67	188.79	276.37	137.52
Merged-chr6-72097512-3	chr6	72097420	72097620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-88.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	92.87	62.63	77.01	90.49	108.41	86.55	101.98	124.35	119.19	128.04	140.19	112.15
Merged-chr1-185294815-3	chr1	185294726	185294926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198653, exon 18 of 23)	exon (NM_198653, exon 18 of 23)	-18493.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	24.63	13.33	42.78	37.4	61.37	43.9	61.12	74.83	41.5	26.61	77.38	43.86
Merged-chr14-16365046-3	chr14	16364920	16365120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-186.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	194.63	167.27	203.65	185.82	217.64	201.31	185.02	230.02	255.5	203.85	299.48	134.7
Merged-chr11-118156726-3	chr11	118156636	118156836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27517.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	25.04	19.87	25.67	26.95	54.41	54.25	59.79	42.14	47.6	43.68	57.28	37.28
Merged-chr13-51645118-3	chr13	51645003	51645203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025415)	promoter-TSS (NM_025415)	-129.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	227.74	252.03	188.82	220.41	266.74	348.07	189.34	196.23	265.53	373.57	296.46	141.28
Merged-chr2-71327303-3	chr2	71327198	71327398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	40256.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	98.53	100.61	127.21	141.57	117.0	145.18	98.65	114.84	130.4	127.53	147.23	94.92
Merged-chr6-87002863-3	chr6	87002708	87002908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-7028.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	26.25	34.46	37.65	55.91	40.91	42.33	35.21	59.94	29.11	27.11	29.65	34.77
Merged-chr18-65800398-4	chr18	65800279	65800479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-199.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	86.41	99.61	94.7	113.42	98.59	137.03	139.18	82.91	140.04	169.21	169.34	82.08
Merged-chr5-105732191-3	chr5	105732080	105732280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	CpG	31370.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	22.61	24.15	21.11	28.56	20.46	25.4	17.94	27.34	29.9	23.6	23.62	18.8
Merged-chr15-101240937-3	chr15	101240860	101241060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15774.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	22.21	18.61	25.67	24.53	22.91	30.1	19.6	29.55	25.77	28.12	37.18	22.87
Merged-chr8-91112332-1	chr8	91112232	91112432	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302337, exon 10 of 10)	3' UTR (NM_001302337, exon 10 of 10)	21407.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	4.85	3.27	6.85	8.85	6.55	3.14	8.64	17.69	3.74	3.01	4.52	3.76
Merged-chr15-59615090-3	chr15	59614995	59615195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33559.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	76.32	70.68	111.81	94.11	45.82	44.53	39.2	62.16	78.87	71.8	74.87	48.87
Merged-chr11-120938971-3	chr11	120938849	120939049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6077.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	52.49	40.5	59.9	23.33	44.59	99.4	34.88	42.9	68.84	84.35	74.37	29.13
Merged-chr9-22225739-3	chr9	22225650	22225850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	38.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	82.78	81.75	101.54	121.06	117.82	116.96	99.32	103.43	94.61	93.89	98.99	64.53
Merged-chr4-56141783-1	chr4	56141683	56141883	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	599642.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	2.02	1.26	5.7	5.63	0.82	0.63	9.63	5.44	2.36	1.0	2.51	2.51
Merged-chr4-125127927-3	chr4	125127825	125128025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-44.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	135.68	139.85	131.78	92.51	117.82	176.54	67.1	83.83	161.68	143.6	163.31	94.92
Merged-chr2-166697488-3	chr2	166697388	166697588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	16344.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	31.5	43.26	45.07	15.28	42.96	56.76	26.57	21.14	54.29	46.19	49.24	28.51
Merged-chr8-60883645-3	chr8	60883562	60883762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-6731.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	27.05	21.63	41.07	40.22	38.86	27.59	40.86	59.94	21.24	30.13	34.17	26.94
Merged-chr9-64789498-3	chr9	64789397	64789597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21514.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	52.9	52.82	50.2	49.87	68.73	62.71	46.84	41.33	83.2	94.9	71.86	54.2
Merged-chr8-111992277-3	chr8	111992176	111992376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357186)	promoter-TSS (NM_001357186)	26.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	50.47	48.54	34.8	49.47	51.96	56.44	34.21	56.52	70.22	67.28	102.51	34.77
Merged-chr7-4653976-3	chr7	4653865	4654065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4985.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	69.05	61.37	90.13	89.29	56.46	77.45	48.16	63.28	51.34	38.66	50.25	35.71
Merged-chr11-55033453-3	chr11	55033366	55033566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110211)	promoter-TSS (NM_001110211)	5.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	41.59	46.28	37.65	33.38	62.59	80.59	24.91	41.5	74.54	58.24	67.84	25.06
Merged-chr16-23107869-1	chr16	23107769	23107969	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152586, intron 1 of 11)	CpG	401.0	NM_001347179	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	31.5	45.78	18.25	19.31	22.09	48.92	12.95	12.25	27.34	35.65	25.12	20.68
Merged-chr15-59511715-2	chr15	59511647	59511847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-136907.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	72.68	70.18	64.46	68.37	2.45	1.25	1.0	0.73	56.06	76.82	71.86	47.93
Merged-chr1-84218751-3	chr1	84218658	84218858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105771)	TTS (NR_105771)	203.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	20.19	11.32	18.25	22.12	23.73	15.99	24.58	29.89	27.14	18.58	34.67	20.05
Merged-chr11-8580012-3	chr11	8579905	8580105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	84530.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	33.11	37.48	40.5	27.75	65.46	88.43	68.76	71.72	71.0	96.91	59.8	22.87
Merged-chr14-76330189-3	chr14	76330101	76330301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78739.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	60.57	59.11	50.2	63.15	44.59	62.09	41.52	64.32	98.74	62.76	80.4	47.62
Merged-chr2-20899496-3	chr2	20899389	20899589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68232.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	56.53	57.1	69.03	54.3	44.59	57.7	27.57	51.76	65.89	53.73	48.74	34.15
Merged-chr2-118901369-3	chr2	118901268	118901468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045523)	promoter-TSS (NM_001045523)	-247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	81.57	86.27	94.13	83.66	84.68	69.3	49.16	77.64	104.83	96.4	117.08	56.07
Merged-chr2-34784784-1	chr2	34784684	34784884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145522, intron 5 of 7)	intron (NM_145522, intron 5 of 7)	12694.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	11.71	11.32	3.42	0.8	4.91	23.83	0.0	0.67	3.54	4.52	1.0	2.51
Merged-chr6-57571811-3	chr6	57571731	57571931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9161.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	30.28	23.14	38.22	35.39	33.96	37.32	22.92	62.19	55.47	37.66	76.38	34.15
Merged-chrX-134059153-3	chrX	134059032	134059232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290398)	promoter-TSS (NM_001290398)	-44.0	NM_001359054	108062.0	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	83.99	73.45	68.45	75.61	95.32	93.44	86.36	120.73	143.19	116.99	168.83	62.97
Merged-chr5-54045751-3	chr5	54045654	54045854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	47231.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	21.4	21.88	48.49	30.57	45.41	39.2	27.57	49.93	26.75	29.12	58.29	29.45
Merged-chr2-79635231-3	chr2	79635146	79635346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-179.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	197.46	182.86	210.5	208.34	229.1	209.78	179.7	240.06	308.01	281.68	422.09	188.27
Merged-chr10-51454597-3	chr10	51454507	51454707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-26005.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	67.43	47.04	43.35	20.91	58.09	73.38	28.23	47.41	62.35	56.74	63.82	43.23
Merged-chr4-134924596-3	chr4	134924524	134924724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023665, intron 2 of 4)	intron (NM_023665, intron 2 of 4)	999.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	42.8	35.97	34.23	39.82	39.68	49.23	20.59	34.82	71.99	34.65	77.88	41.98
Merged-chr1-58743535-3	chr1	58743452	58743652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	13000.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	106.2	77.22	151.74	120.66	116.59	138.6	138.18	128.75	132.57	135.57	125.62	85.84
Merged-chr17-62574775-3	chr17	62574711	62574911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	306506.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	60.17	56.34	90.13	95.32	101.87	81.84	103.31	139.82	105.62	92.89	92.46	74.24
Merged-chr8-35495572-3	chr8	35495459	35495659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-26.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	88.43	86.27	84.43	93.31	105.14	121.04	55.14	117.25	111.92	113.48	160.29	74.56
Merged-chr12-111484073-1	chr12	111483973	111484173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001033248)	TTS (NM_001033248)	1750.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	16.56	12.83	4.56	2.41	2.45	8.47	2.66	4.23	3.54	6.03	3.52	5.64
Merged-chr9-100545353-1	chr9	100545253	100545453	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	CpG	781.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.67	4.78	9.13	6.03	11.05	10.98	2.99	10.04	8.06	8.54	6.53	3.13
Merged-chr18-53255530-3	chr18	53255437	53255637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	9875.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	52.49	27.92	54.76	38.61	66.27	49.23	30.89	53.86	74.94	60.25	66.83	58.58
Merged-chr5-64211491-3	chr5	64211391	64211591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	RCHARR1|DNA|hAT-Charlie	-18866.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	41.59	35.47	71.31	49.47	59.32	54.25	86.7	72.5	48.19	47.7	65.83	28.51
Merged-chr9-65562321-3	chr9	65562221	65562421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17766.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	76.72	62.88	71.88	71.99	79.78	87.8	120.58	81.03	85.95	94.9	58.29	35.4
Merged-chr5-124013070-3	chr5	124012973	124013173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16221.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	33.52	36.97	37.65	34.99	47.05	56.44	44.84	51.36	66.09	40.17	40.2	41.35
Merged-chr11-55204299-3	chr11	55204140	55204340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-100.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	32.71	13.33	22.82	14.88	26.18	29.79	25.58	18.17	32.06	24.1	28.64	15.66
Merged-chr16-22331112-3	chr16	22331015	22331215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36127.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	17.36	16.85	22.82	30.97	24.96	24.77	25.24	33.0	24.98	14.06	25.12	18.48
Merged-chr19-3931915-3	chr19	3931794	3931994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2178.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	104.99	90.55	139.76	112.21	126.0	157.73	110.61	115.74	118.41	116.99	142.71	76.75
Merged-chrX-103981373-3	chrX	103981262	103981462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358205)	promoter-TSS (NM_001358205)	-77.0	NM_011276	19820.0	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	95.3	97.59	83.29	74.81	135.41	150.83	76.73	102.53	135.52	113.48	186.92	93.67
Merged-chr1-36948120-3	chr1	36948014	36948214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-8587.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	38.36	31.94	26.81	39.82	47.46	42.33	30.23	19.4	43.86	30.63	58.79	31.95
Merged-chr9-95750317-3	chr9	95750185	95750385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311123)	promoter-TSS (NM_001311123)	73.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	60.17	81.5	45.64	84.86	66.68	81.53	67.76	73.88	90.87	89.88	110.04	62.34
Merged-chr12-69583062-3	chr12	69582890	69583090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033236)	promoter-TSS (NM_001033236)	38.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	50.07	54.58	83.86	51.88	70.37	70.87	52.48	69.42	36.39	25.11	47.23	25.69
Merged-chr14-30593888-3	chr14	30593784	30593984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16426.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	73.09	76.97	79.86	63.15	69.14	77.45	66.77	67.35	63.92	49.21	104.52	53.88
Merged-chr1-131200223-3	chr1	131200109	131200309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-24.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	127.2	125.26	136.34	134.33	130.91	164.31	84.37	125.94	162.27	100.42	206.02	99.31
Merged-chr8-105880902-3	chr8	105880815	105881015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181594)	promoter-TSS (NM_181594)	34.0	NM_181594	234699.0	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	29.88	25.15	26.81	12.07	17.18	24.15	11.29	25.99	24.39	18.58	33.67	20.36
Merged-chr5-21411510-3	chr5	21411430	21411630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	13147.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	127.6	140.1	139.76	114.63	122.73	146.75	102.97	126.2	176.23	179.75	155.27	92.41
Merged-chr1-36557463-5	chr1	36557355	36557555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001304330, exon 1 of 16)	5' UTR (NM_001304330, exon 1 of 16)	102.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	10.5	17.86	24.53	16.09	16.77	21.01	19.27	12.34	14.16	15.06	20.6	11.28
Merged-chr13-98868734-2	chr13	98868635	98868835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	22307.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	26.25	15.59	23.96	31.37	19.64	23.52	15.94	29.44	0.2	0.0	0.0	2.51
Merged-chr10-96035248-3	chr10	96035155	96035355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 22 of 28)	MTEa|LTR|ERVL-MaLR	94592.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	65.41	56.09	55.9	71.99	57.68	84.35	43.18	79.07	60.58	61.76	72.86	52.94
Merged-chrX-163745356-1	chrX	163745256	163745456	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	15976.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	2.42	3.02	3.42	1.61	4.09	0.94	9.97	11.38	2.56	9.54	4.02	0.0
Merged-chr12-85992205-3	chr12	85992104	85992304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86837.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	25.44	45.02	50.77	35.39	41.73	35.12	29.56	60.42	61.76	56.24	71.35	32.58
Merged-chr14-103037265-3	chr14	103037153	103037353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3450.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	125.18	128.28	83.86	136.35	101.46	165.25	152.8	140.02	148.5	154.15	194.96	97.11
Merged-chr2-150789539-1	chr2	150789439	150789639	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2743.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	2.42	2.26	2.28	8.45	3.68	2.51	9.63	4.88	6.69	1.0	4.02	0.94
Merged-chr7-25386274-3	chr7	25386162	25386362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_073028)	TTS (NR_073028)	3850.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	35.13	21.38	16.54	29.36	27.0	16.62	8.3	27.31	24.0	12.55	23.11	14.41
Merged-chr13-113616820-3	chr13	113616712	113616912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1752.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	13.33	16.35	18.25	16.09	15.55	15.68	32.55	22.46	20.46	19.58	47.74	35.71
Merged-chr13-60601901-3	chr13	60601785	60601985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-62.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	35.94	21.63	43.93	40.62	71.18	59.89	49.49	60.5	73.17	44.19	77.88	48.87
Merged-chr2-27563941-3	chr2	27563842	27564042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48795.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	43.61	35.97	53.62	53.09	36.41	53.62	32.88	47.94	39.53	34.65	60.8	33.52
Merged-chr4-149696874-3	chr4	149696772	149696972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1836.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	43.61	27.67	38.79	44.24	27.82	36.06	23.58	33.48	61.37	17.57	37.18	35.09
Merged-chr1-136466294-3	chr1	136466196	136466396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1552.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	75.51	52.07	69.03	58.32	97.78	65.22	62.78	89.27	100.7	72.3	127.63	69.55
Merged-chr11-82035489-3	chr11	82035409	82035609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011333)	promoter-TSS (NM_011333)	-68.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	91.26	100.86	111.24	115.03	73.64	119.78	70.75	81.36	112.31	111.97	128.13	67.35
Merged-chr2-25332620-3	chr2	25332524	25332724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	-53.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	117.91	129.54	159.16	106.99	162.41	179.68	80.05	98.3	189.41	175.23	147.73	116.22
Merged-chr3-89847814-3	chr3	89847697	89847897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172530, intron 2 of 5)	MIR|SINE|MIR	16427.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	27.46	22.13	45.64	44.24	26.59	23.52	41.19	63.45	46.42	23.1	60.8	31.95
Merged-chr7-138389251-3	chr7	138389151	138389351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	8479.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	37.15	33.7	41.64	47.06	33.96	42.96	43.51	50.27	31.47	40.17	38.69	21.3
Merged-chr5-36484465-3	chr5	36484350	36484550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-138.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	217.65	217.57	259.56	232.87	216.82	264.34	214.91	217.23	296.8	328.38	403.49	198.3
Merged-chr8-11767635-3	chr8	11767535	11767735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017402, intron 1 of 19)	RMER15|LTR|ERVL	9305.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	14.13	15.09	26.24	30.16	30.68	36.37	25.24	28.99	32.85	37.66	41.71	35.71
Merged-chr1-127774053-3	chr1	127773968	127774168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	-14.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	273.37	310.89	294.93	262.64	324.83	396.04	279.69	238.57	390.03	405.2	424.1	218.97
Merged-chrX-166510534-3	chrX	166510413	166510613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007577)	promoter-TSS (NM_001007577)	-35.0	NM_001007577	245695.0	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	104.58	97.34	117.51	116.24	158.73	171.52	113.27	189.39	148.11	170.21	244.71	104.63
Merged-chr4-139199851-3	chr4	139199741	139199941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5730.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	37.96	49.55	54.76	67.17	30.68	44.21	37.2	46.74	49.57	43.18	77.88	34.46
Merged-chr5-65860839-3	chr5	65860714	65860914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2755.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	29.48	21.13	57.05	46.25	44.59	26.03	27.24	41.33	38.35	40.67	61.3	32.89
Merged-chr4-89295379-4	chr4	89295271	89295471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	191.0	NR_132431	102633081.0	Mm.409388	NR_132431		Gm12610	ANRIL|Gm12609	predicted gene 12610	ncRNA	16.56	28.93	18.83	27.35	27.82	28.22	39.2	34.07	31.47	13.56	25.63	21.62
Merged-chr15-25590177-1	chr15	25590077	25590277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-32373.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	33.92	18.61	27.95	24.53	0.0	0.0	0.66	0.0	0.2	0.0	1.0	0.31
Merged-chr15-93917141-3	chr15	93917041	93917241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	9970.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	15.34	18.11	24.53	38.61	20.05	16.31	12.62	32.97	21.64	29.12	47.74	32.27
Merged-chr4-145258217-3	chr4	145258111	145258311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11341.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	93.68	86.78	78.15	51.08	160.78	156.47	96.66	86.02	127.06	118.5	119.59	72.36
Merged-chr5-123398036-3	chr5	123397920	123398120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	3222.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	31.5	37.23	41.64	42.23	33.96	28.85	14.95	26.55	35.8	22.09	26.63	19.42
Merged-chr8-57487131-3	chr8	57487031	57487231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	729.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	19.79	29.93	27.95	26.14	24.96	25.09	35.21	26.38	26.95	22.59	38.19	20.99
Merged-chr15-51952588-3	chr15	51952480	51952680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	32.71	35.72	46.21	41.02	44.59	52.99	36.21	58.77	88.71	78.83	86.43	59.52
Merged-chr17-34894354-3	chr17	34894265	34894465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198886)	promoter-TSS (NM_198886)	-194.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	77.53	86.53	70.74	64.35	84.68	71.49	35.54	68.47	100.7	124.02	87.43	47.3
Merged-chr11-60927466-3	chr11	60927372	60927572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4395.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	68.24	56.34	55.33	58.32	69.55	66.16	30.89	62.5	81.82	86.36	76.38	45.42
Merged-chrX-36129583-3	chrX	36129518	36129718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 2 of 10)	intron (NM_133990, intron 2 of 10)	17510.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	47.65	41.75	37.65	31.37	52.37	51.43	21.92	32.55	28.52	44.69	28.14	9.4
Merged-chr2-125791571-3	chr2	125791420	125791620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8650.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	37.96	38.99	35.37	53.09	55.23	48.92	37.87	50.89	63.53	67.78	80.4	49.5
Merged-chr11-47063955-3	chr11	47063858	47064058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	253159.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	60.97	51.56	77.01	97.33	56.05	58.32	54.48	90.45	117.23	114.48	139.69	57.64
Merged-chr2-30205836-3	chr2	30205754	30205954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	-7.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	53.3	58.1	69.03	49.07	78.96	99.09	61.12	65.22	96.38	87.87	87.93	41.04
Merged-chr7-120205759-2	chr7	120205641	120205841	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026458, intron 1 of 30)	L1MB5|LINE|L1	1777.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	6.86	5.03	3.99	7.24	25.77	21.01	25.58	27.95	20.26	15.57	29.14	15.04
Merged-chrX-150925259-1	chrX	150925159	150925359	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	92034.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	4.85	3.27	1.71	2.82	4.5	4.39	8.64	11.41	5.9	6.53	6.53	4.07
Merged-chr16-38753661-3	chr16	38753555	38753755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 2 of 6)	(A)n|Simple_repeat|Simple_repeat	11396.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	31.5	23.39	38.79	30.16	31.5	25.71	35.21	35.78	40.71	26.61	54.27	23.49
Merged-chr13-3526467-3	chr13	3526358	3526558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11617.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	79.95	79.99	83.29	111.81	56.87	52.99	58.13	103.68	74.74	63.27	76.88	43.86
Merged-chr12-12172299-1	chr12	12172199	12172399	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89840.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.42	2.01	6.28	1.61	0.82	0.94	11.96	12.14	11.01	7.53	6.53	9.4
Merged-chr8-41239563-3	chr8	41239459	41239659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-200.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	191.8	196.19	201.94	223.22	211.92	269.99	237.83	233.08	234.85	207.87	297.47	145.98
Merged-chr8-83652553-3	chr8	83652423	83652623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-155.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	127.6	141.11	110.67	133.93	130.09	163.06	102.31	124.51	164.82	165.69	171.85	110.9
Merged-chr8-119813186-3	chr8	119813089	119813289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	27390.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	153.04	136.08	225.33	187.83	184.51	185.95	183.03	204.2	193.54	192.31	269.83	145.36
Merged-chr7-79660122-3	chr7	79660030	79660230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029835)	promoter-TSS (NM_029835)	-66.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	130.43	128.03	138.62	153.24	176.73	201.31	117.26	184.23	218.32	165.69	219.08	146.61
Merged-chr2-180126312-2	chr2	180126212	180126412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	6946.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	28.27	24.15	39.93	43.04	33.14	26.34	49.83	68.92	3.15	1.51	6.53	5.01
Merged-chr14-102748822-3	chr14	102748722	102748922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	233810.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	47.24	22.64	35.37	57.51	63.82	58.32	75.4	66.39	55.07	44.69	80.4	41.35
Merged-chr13-21408566-3	chr13	21408486	21408686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5831.0	NM_023685	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	91.26	62.38	102.11	90.9	100.23	90.62	85.04	116.3	45.83	45.19	82.41	47.62
Merged-chr8-126804268-3	chr8	126804168	126804368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44752.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	138.5	123.0	126.64	75.21	164.46	192.22	106.63	124.74	148.3	153.64	147.23	69.23
Merged-chr5-138262274-3	chr5	138262159	138262359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153161, exon 6 of 11)	exon (NM_153161, exon 6 of 11)	-1786.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	23.82	28.93	22.82	34.99	40.5	24.15	27.57	33.39	22.42	41.17	32.66	21.62
Merged-chr15-59051274-3	chr15	59051180	59051380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	L1M2|LINE|L1	30746.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	33.92	22.13	35.94	64.75	73.64	81.84	76.73	84.03	50.35	47.2	88.94	57.33
Merged-chr17-88256575-3	chr17	88256465	88256665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131053.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	20.59	21.63	23.96	6.03	21.68	43.27	24.25	13.15	29.7	21.59	20.6	3.45
Merged-chr9-108347805-3	chr9	108347707	108347907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-24.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	140.12	122.75	138.05	119.45	117.0	193.16	112.61	103.07	159.51	178.75	176.87	133.76
Merged-chr11-109247088-3	chr11	109246985	109247185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165934, intron 12 of 16)	L1MB8|LINE|L1	51096.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	90.85	136.33	107.82	57.11	67.91	124.8	54.48	38.8	98.93	76.82	93.46	30.39
Merged-chr10-87832257-3	chr10	87832140	87832340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26025.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	94.08	70.43	85.0	90.9	97.37	89.05	88.03	115.12	107.39	117.99	112.56	66.41
Merged-chr3-95015614-3	chr3	95015513	95015713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-156.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	196.24	206.25	262.41	232.07	231.55	297.27	205.95	258.93	297.2	286.7	428.12	161.96
Merged-chr11-63026781-3	chr11	63026668	63026868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22634.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	23.02	16.85	41.07	34.19	36.0	53.31	72.75	54.08	61.56	40.17	91.45	29.13
Merged-chr15-59721755-3	chr15	59721669	59721869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73115.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	30.69	23.64	37.08	29.36	63.82	67.73	62.45	74.22	47.8	33.14	59.8	29.13
Merged-chr13-100833474-3	chr13	100833379	100833579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-52.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	180.9	176.32	130.63	167.32	165.28	183.44	125.56	162.39	209.28	232.47	245.71	104.0
Merged-chr11-67579310-3	chr11	67579187	67579387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-7213.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	59.76	51.56	59.33	50.27	63.41	77.77	54.14	57.45	71.79	69.79	73.86	50.75
Merged-chr13-54071966-6	chr13	54071883	54072083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027324, intron 1 of 10)	CpG	138.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	18.57	18.36	13.12	23.33	9.82	10.35	16.61	14.24	32.65	25.11	34.17	24.43
Merged-chrX-16619695-1	chrX	16619595	16619795	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173740)	promoter-TSS (NM_173740)	-3.0	NM_173740	17161.0	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	4.04	2.52	1.14	1.21	21.27	22.26	15.28	21.9	6.69	2.01	15.58	1.25
Merged-chr19-29940424-3	chr19	29940298	29940498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5392.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	116.7	152.17	179.12	152.43	161.19	141.11	140.84	171.59	165.22	147.12	193.96	88.97
Merged-chr5-147896033-3	chr5	147895947	147896147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1232.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	66.22	50.81	88.42	76.42	48.27	39.2	55.8	74.69	73.36	64.77	88.44	48.87
Merged-chr4-151933626-3	chr4	151933512	151933712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172704)	promoter-TSS (NM_172704)	-108.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	95.3	101.62	112.95	78.03	99.82	116.02	93.01	87.2	159.32	142.6	142.71	93.04
Merged-chr17-35259249-3	chr17	35259130	35259330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3864.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	152.23	139.09	195.1	138.76	174.28	222.64	130.21	142.57	105.23	104.94	110.04	65.79
Merged-chr5-54060235-1	chr5	54060135	54060335	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	61712.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	2.83	1.51	7.42	5.63	9.0	3.76	10.63	9.98	7.47	8.03	7.03	3.45
Merged-chr9-45245088-2	chr9	45244967	45245167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21640.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	4.85	11.57	5.13	16.09	4.5	7.84	2.33	8.72	11.8	8.03	19.6	5.33
Merged-chr10-125317577-3	chr10	125317473	125317673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-8757.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	63.4	37.48	97.55	129.91	80.59	69.93	103.97	164.44	84.38	73.31	164.31	72.99
Merged-chr14-31423282-3	chr14	31423180	31423380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-5603.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	68.24	38.23	63.32	84.86	84.28	61.15	68.76	89.44	87.13	71.3	79.89	48.56
Merged-chr18-56707691-3	chr18	56707585	56707785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010721)	promoter-TSS (NM_010721)	-128.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	89.64	97.09	101.54	122.67	91.64	88.43	108.62	113.47	134.73	144.61	163.81	76.44
Merged-chr11-76179695-3	chr11	76179578	76179778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026664)	promoter-TSS (NM_026664)	-48.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	25.44	25.15	18.83	26.95	33.14	37.32	17.94	25.35	28.91	27.62	42.21	16.29
Merged-chr12-110822555-3	chr12	110822449	110822649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	18390.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	22.61	17.36	30.8	38.21	37.64	22.58	16.28	36.5	37.37	24.1	45.73	30.07
Merged-chr14-57619660-3	chr14	57619563	57619763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020506, intron 6 of 22)	intron (NM_020506, intron 6 of 22)	45293.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	26.25	32.95	32.52	30.97	20.86	25.09	20.59	34.63	27.34	22.59	35.68	26.63
Merged-chr1-33670433-3	chr1	33670340	33670540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	616.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	26.65	32.7	30.23	26.55	42.55	30.73	26.57	46.23	34.03	18.58	57.79	34.15
Merged-chr3-89228300-3	chr3	89228212	89228412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013605)	promoter-TSS (NM_013605)	-744.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	27.46	33.96	30.23	18.9	26.18	29.16	15.94	28.15	71.4	42.18	48.24	22.87
Merged-chr15-89172701-3	chr15	89172600	89172800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1251.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	16.56	13.08	25.1	21.32	19.64	28.85	24.58	22.85	21.24	20.59	31.66	16.6
Merged-chr8-3221888-3	chr8	3221795	3221995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	57722.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	21.8	13.83	24.53	28.56	30.27	20.38	19.93	42.98	38.75	31.63	42.71	25.37
Merged-chr17-35218861-5	chr17	35218758	35218958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13507.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	12.11	12.32	10.27	8.85	13.91	16.62	14.28	6.98	25.18	20.59	21.1	10.65
Merged-chr2-166031222-3	chr2	166031128	166031328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	38591.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	30.69	34.21	23.96	45.85	30.27	32.3	13.29	27.81	32.06	30.63	28.14	15.04
Merged-chr9-108002533-3	chr9	108002430	108002630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-118.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	138.91	117.97	143.76	121.46	139.5	169.96	102.97	113.16	184.89	184.27	157.78	100.87
Merged-chr4-155187316-3	chr4	155187213	155187413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	35222.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	27.05	22.64	37.08	24.94	49.91	38.26	27.9	45.67	27.93	17.07	33.67	28.82
Merged-chr7-16387864-3	chr7	16387753	16387953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285892)	promoter-TSS (NM_001285892)	43.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	72.28	75.71	67.31	53.49	83.46	82.16	41.85	58.12	100.9	91.89	97.48	57.01
Merged-chr12-76393138-1	chr12	76393038	76393238	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11038.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	4.85	9.06	7.99	2.41	17.59	15.05	12.62	12.31	12.78	6.03	5.02	1.57
Merged-chr12-91849258-3	chr12	91849141	91849341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-84.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	241.47	230.15	257.85	309.69	311.33	339.29	258.43	379.4	360.92	322.35	516.55	266.9
Merged-chr7-35119228-3	chr7	35119145	35119345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-48.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	199.88	206.76	212.21	207.54	219.28	270.3	208.27	204.34	217.54	242.52	284.41	151.62
Merged-chr4-138304676-3	chr4	138304571	138304771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-67.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	146.17	161.73	135.77	122.67	172.64	277.83	182.03	163.51	201.02	270.13	243.2	157.57
Merged-chr2-11777614-3	chr2	11777494	11777694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	-9.0	NM_001348236	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	158.69	147.14	202.51	177.37	173.46	205.08	122.24	174.11	205.54	190.3	291.94	125.62
Merged-chr18-82876412-3	chr18	82876307	82876507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20510.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	44.42	28.67	30.8	24.53	65.87	77.14	29.23	26.52	67.07	72.3	53.77	24.75
Merged-chr9-13828126-2	chr9	13828008	13828208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176836, intron 1 of 9)	CpG-14706	392.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	25.04	30.43	30.23	38.61	33.96	31.36	49.49	31.49	39.53	36.15	46.73	33.52
Merged-chr7-113614647-3	chr7	113614541	113614741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49654.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	19.38	21.38	25.67	20.51	15.55	26.65	16.94	42.03	36.19	30.13	38.19	15.04
Merged-chr1-185329269-3	chr1	185329131	185329331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198653, exon 1 of 23)	exon (NM_198653, exon 1 of 23)	170.0	NM_198653	381314.0	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	50.47	49.3	35.37	21.32	51.14	50.49	46.5	37.88	41.5	52.72	47.74	28.82
Merged-chr3-135402500-3	chr3	135402385	135402585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20948.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	15.75	17.61	19.97	21.32	26.59	21.64	17.94	22.57	27.54	29.62	34.67	27.57
Merged-chr3-95293810-3	chr3	95293720	95293920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	10885.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	79.95	71.94	116.37	124.68	166.1	148.63	130.21	187.91	121.95	112.47	172.35	114.97
Merged-chr6-97806960-3	chr6	97806850	97807050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-108.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	83.18	106.65	93.55	111.01	117.82	113.83	83.71	131.08	106.6	108.45	136.68	60.46
Merged-chr17-86962556-3	chr17	86962456	86962656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	-555.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	52.09	42.76	61.61	43.04	78.96	74.94	26.24	59.78	59.6	59.25	60.8	51.38
Merged-chr3-7755732-3	chr3	7755669	7755869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-142009.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	57.34	70.93	97.55	64.75	67.91	59.27	41.52	52.37	82.02	65.78	79.39	50.12
Merged-chr2-128420634-3	chr2	128420552	128420752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	8699.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	77.53	126.02	73.59	42.63	62.59	147.38	41.85	38.75	90.67	120.0	59.29	30.39
Merged-chr10-118083185-3	chr10	118083052	118083252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58635.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	138.5	110.92	183.69	146.0	172.23	167.76	169.74	201.45	106.6	45.19	125.12	79.88
Merged-chr12-40559302-3	chr12	40559208	40559408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113255.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	84.8	79.73	69.6	87.68	88.78	110.38	94.0	103.85	121.16	97.41	104.01	54.82
Merged-chr17-33955750-3	chr17	33955688	33955888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	-12.0	NM_001357330	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	115.49	99.61	98.69	97.33	83.46	140.79	46.5	77.47	93.23	107.95	105.02	75.81
Merged-chr8-84907737-3	chr8	84907636	84907836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	-888.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	41.99	29.18	37.65	32.58	38.46	38.88	24.58	42.31	57.24	49.21	52.26	21.3
Merged-chr17-74528344-3	chr17	74528235	74528435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	40.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	265.7	263.35	289.22	273.09	299.46	323.61	277.69	306.76	359.15	384.61	498.97	241.84
Merged-chr12-111443857-2	chr12	111443743	111443943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1182.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	15.34	25.4	18.25	15.69	12.68	53.93	28.9	15.31	37.37	26.61	41.71	21.93
Merged-chr5-17854698-3	chr5	17854596	17854796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-4904.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	140.92	133.06	180.26	199.09	151.37	173.41	136.52	199.88	142.4	140.09	176.87	96.17
Merged-chr4-133130479-3	chr4	133130403	133130603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-130.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	83.99	76.97	57.62	49.47	85.5	84.98	31.56	49.71	91.66	94.4	73.36	49.81
Merged-chr5-102055170-3	chr5	102055054	102055254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	MLTR11B|LTR|ERVK	14767.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	44.42	27.42	66.17	69.58	65.87	61.77	85.37	74.02	49.57	43.18	93.46	44.8
Merged-chr11-60538058-3	chr11	60537946	60538146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172943, exon 1 of 4)	5' UTR (NM_172943, exon 1 of 4)	363.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	52.09	53.58	26.81	25.34	55.64	62.71	24.25	31.63	73.56	99.92	75.87	40.72
Merged-chr3-10288706-3	chr3	10288580	10288780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	RMER17D2|LTR|ERVK	12503.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	78.74	55.59	81.0	130.71	101.87	63.03	67.76	75.39	95.59	79.83	116.58	60.46
Merged-chr5-76183928-3	chr5	76183831	76184031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	51.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	74.7	51.81	64.46	70.38	69.14	72.44	56.14	88.12	84.97	84.35	128.64	54.51
Merged-chr12-76255237-3	chr12	76255133	76255333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	1.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	123.56	96.08	108.39	128.3	119.87	135.46	117.92	159.34	166.79	178.75	227.12	81.76
Merged-chr4-126137949-1	chr4	126137849	126138049	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028800, intron 10 of 10)	intron (NM_028800, intron 10 of 10)	-10054.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	3.63	10.31	3.42	0.0	12.68	24.77	12.29	5.16	10.42	6.03	6.53	2.82
Merged-chr11-58010421-3	chr11	58010344	58010544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	1380.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	68.65	63.13	75.3	41.43	68.32	61.46	40.52	57.39	80.45	80.34	80.4	28.82
Merged-chrUn_JH584304-37164-1	chrUn_JH584304	37064	37264	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	22525.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	113.29	153.14	157.78	85.21
Merged-chrX-117770527-3	chrX	117770430	117770630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-656697.0	NM_001142750	100039551.0	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	43.21	50.81	66.17	78.43	76.5	87.8	80.39	133.91	91.46	109.46	200.49	63.91
Merged-chr9-108049171-3	chr9	108049072	108049272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357682)	promoter-TSS (NM_001357682)	-92.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	214.82	189.4	231.61	238.5	211.51	250.54	130.88	212.36	243.11	199.34	268.83	150.68
Merged-chr9-42264342-3	chr9	42264224	42264424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172769)	promoter-TSS (NM_172769)	-24.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	109.83	103.13	82.72	98.54	122.32	159.61	85.37	126.28	176.04	129.54	177.88	78.94
Merged-chr7-135914125-1	chr7	135914025	135914225	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-197746.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	10.9	13.33	7.99	6.84	13.09	20.07	6.31	11.78	13.57	17.07	10.05	11.28
Merged-chr19-40247473-1	chr19	40247373	40247573	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016861, intron 3 of 6)	intron (NM_016861, intron 3 of 6)	24143.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	4.85	6.29	3.42	6.44	7.36	18.5	3.32	17.72	5.31	6.53	6.03	5.33
Merged-chrX-20658335-3	chrX	20658244	20658444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009457)	promoter-TSS (NM_009457)	42.0	NM_009457	22201.0	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	42.4	32.7	29.09	32.58	38.46	61.46	62.45	58.68	44.84	61.26	53.26	37.28
Merged-chr15-50840677-3	chr15	50840609	50840809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 2 of 5)	MIR|SINE|MIR	48340.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	58.95	61.62	77.58	75.21	92.05	122.29	80.72	139.6	100.31	85.86	102.0	46.36
Merged-chr8-72322621-3	chr8	72322539	72322739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008452)	TTS (NM_008452)	3577.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	151.02	166.26	177.41	193.86	146.46	205.08	171.4	172.94	224.22	212.89	247.22	166.34
Merged-chr7-100845624-3	chr7	100845524	100845724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177073)	TTS (NM_177073)	17789.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	67.03	67.91	64.46	78.43	86.73	101.28	81.38	86.05	81.04	71.8	122.1	61.09
Merged-chr9-88523030-3	chr9	88522915	88523115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040721)	promoter-TSS (NR_040721)	-118.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	176.05	167.77	136.34	152.84	209.46	216.05	150.14	175.18	238.19	223.44	212.05	127.5
Merged-chr2-59343010-3	chr2	59342910	59343110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	43672.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	33.52	38.99	40.5	42.63	39.27	49.86	38.86	44.61	44.06	36.65	41.2	33.21
Merged-chr13-75820126-3	chr13	75820030	75820230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19755.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	23.82	30.43	30.23	39.82	34.36	38.26	31.22	41.86	40.52	39.67	41.71	28.51
Merged-chr2-79696153-3	chr2	79696045	79696245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11635.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	71.47	59.11	98.12	86.88	141.96	112.26	73.74	104.78	114.87	97.41	159.29	67.04
Merged-chr2-164074111-3	chr2	164074037	164074237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021420)	promoter-TSS (NM_021420)	-41.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	76.32	86.27	94.13	88.08	71.18	105.67	69.09	68.33	90.08	83.85	95.47	70.48
Merged-chr17-22081246-1	chr17	22081146	22081346	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	84731.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.0	3.77	3.42	0.0	2.45	0.94	2.99	3.59	39.73	40.67	38.69	19.42
Merged-chr6-17800937-3	chr6	17800836	17801036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51766.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	39.17	24.65	53.05	24.94	42.96	42.02	33.55	43.88	50.75	62.76	76.38	38.85
Merged-chr10-88731420-3	chr10	88731326	88731526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	12.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	60.17	57.1	63.89	48.67	77.73	65.22	47.83	67.74	46.81	37.16	86.43	44.8
Merged-chr13-95892108-3	chr13	95892028	95892228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027711)	promoter-TSS (NM_027711)	-206.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	50.47	51.56	37.65	54.3	54.82	48.6	34.88	49.21	56.25	48.7	53.26	35.09
Merged-chr2-52891309-3	chr2	52891225	52891425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MLT1F|LTR|ERVL-MaLR	33457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	15.34	16.35	21.68	14.08	39.68	25.09	36.87	48.39	23.6	23.1	25.12	18.17
Merged-chr4-148160120-3	chr4	148160006	148160206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-12.0	NR_104374	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	102.97	115.7	109.53	127.5	117.41	130.13	86.03	117.25	155.19	151.13	188.43	91.79
Merged-chr13-95033188-3	chr13	95033071	95033271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	56827.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	47.24	65.15	62.18	47.86	81.82	75.26	65.77	100.88	73.36	57.24	62.31	39.47
Merged-chr11-97782459-3	chr11	97782364	97782564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-25.0	NM_022891	65019.0	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	33.92	38.23	70.17	39.82	54.82	75.26	24.58	30.76	82.41	63.77	61.3	46.68
Merged-chr19-47224952-3	chr19	47224867	47225067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021360, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-3876.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	65.41	54.83	78.15	70.38	53.59	75.26	42.52	61.71	72.38	91.89	103.51	60.77
Merged-chr5-21424811-3	chr5	21424712	21424912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	-91.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	110.24	94.07	91.27	117.04	136.23	116.65	81.71	148.91	146.53	125.02	206.02	71.42
Merged-chr11-79214202-3	chr11	79214112	79214312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28812.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	92.87	69.17	72.45	47.46	108.41	126.37	80.05	86.02	102.08	124.52	120.09	47.3
Merged-chr14-61971625-3	chr14	61971529	61971729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-289256.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	35.94	17.61	21.68	28.15	45.41	18.5	22.26	43.71	31.27	19.08	39.7	17.23
Merged-chr7-28709676-3	chr7	28709584	28709784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7098.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	18.98	20.63	28.52	30.97	33.96	25.4	16.94	35.94	31.27	22.59	41.2	25.69
Merged-chr19-47919277-3	chr19	47919189	47919389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	10.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	49.26	42.26	42.21	54.3	60.14	59.58	34.21	56.92	73.76	87.37	83.41	62.97
Merged-chr4-19894794-3	chr4	19894690	19894890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	L1MC3|LINE|L1	27776.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	74.3	52.07	72.45	86.88	71.59	79.33	80.05	84.65	75.33	66.28	107.53	49.5
Merged-chr14-79430466-3	chr14	79430373	79430573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001024135, exon 1 of 1)	3' UTR (NM_001024135, exon 1 of 1)	3962.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	26.25	19.12	23.39	39.82	23.73	30.73	23.58	29.58	42.48	27.11	33.67	17.54
Merged-chr2-131036926-1	chr2	131036826	131037026	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	3472.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	10.9	1.76	5.7	1.21	9.82	5.96	3.99	11.16	5.7	5.52	3.52	2.82
Merged-chr6-53287286-3	chr6	53287177	53287377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-26.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	37.15	30.69	20.54	31.77	43.36	94.7	42.19	51.56	36.78	43.68	42.21	16.29
Merged-chr16-76372377-3	chr16	76372293	76372493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	CpG	656.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	31.5	30.18	32.52	39.01	29.86	56.13	53.81	43.46	39.73	53.22	65.83	26.0
Merged-chr7-45923623-3	chr7	45923526	45923726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2200.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	131.23	112.94	141.47	101.35	124.78	187.2	121.24	134.92	174.27	164.69	195.97	101.19
Merged-chr18-35942317-3	chr18	35942227	35942427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22503.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	104.18	62.38	78.15	96.53	94.5	91.56	64.44	89.89	92.64	99.92	108.03	61.71
Merged-chr8-70539452-3	chr8	70539371	70539571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-204.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	208.76	232.16	191.1	186.62	226.23	238.0	188.01	200.55	253.53	313.82	294.96	168.85
Merged-chr5-121842843-3	chr5	121842738	121842938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5979.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	45.63	39.74	61.61	43.44	70.77	84.35	44.18	53.41	60.58	52.22	33.16	23.81
Merged-chr8-104442929-3	chr8	104442822	104443022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013380, exon 1 of 13)	5' UTR (NM_001013380, exon 1 of 13)	125.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	32.71	47.79	31.38	57.92	45.0	43.27	64.11	43.23	39.53	47.2	61.3	50.75
Merged-chr17-46383599-3	chr17	46383494	46383694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207671)	promoter-TSS (NM_207671)	-172.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	151.42	132.56	150.6	151.23	171.41	194.1	119.58	145.63	186.46	199.34	234.66	112.78
Merged-chr19-29512036-1	chr19	29511936	29512136	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015567, intron 2 of 3)	B4A|SINE|B4	9951.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	12.92	4.28	9.13	11.66	15.96	8.47	22.26	21.79	12.0	14.06	23.62	10.96
Merged-chr10-94148271-3	chr10	94148185	94148385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011629, intron 1 of 13)	CpG	354.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	30.28	30.94	25.67	18.5	33.14	33.24	21.92	21.28	46.62	38.16	43.72	29.13
Merged-chr3-36863046-3	chr3	36862921	36863121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-85.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	135.68	145.13	147.75	202.31	193.51	201.63	170.07	192.31	214.59	233.98	286.42	161.96
Merged-chr11-6366085-3	chr11	6365981	6366181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29044.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	41.19	48.29	45.07	27.75	79.78	88.11	28.57	43.07	74.35	74.31	60.8	24.12
Merged-chr4-46563970-3	chr4	46563846	46564046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	2494.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	139.71	139.35	201.37	178.98	234.42	191.28	218.24	211.49	159.12	154.15	157.78	109.64
Merged-chr4-102760215-3	chr4	102760108	102760308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	73.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	16.56	16.1	15.4	16.89	24.96	26.97	18.27	29.16	18.29	8.54	23.11	17.54
Merged-chr10-62582417-3	chr10	62582320	62582520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019553, exon 15 of 15)	exon (NM_019553, exon 15 of 15)	-3963.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	27.86	33.7	33.09	51.08	35.59	56.44	30.89	25.57	35.8	44.19	62.81	32.58
Merged-chr16-18413212-3	chr16	18413118	18413318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	276.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	30.69	42.01	77.58	85.27	46.64	27.91	46.17	68.38	41.5	36.15	45.22	47.3
Merged-chr6-108448275-1	chr6	108448175	108448375	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41468.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	21.0	19.87	30.23	20.11	31.09	56.44	41.19	49.32	48.78	32.13	64.32	17.23
Merged-chr18-66437539-3	chr18	66437440	66437640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21064.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	28.67	14.34	25.67	26.14	30.68	33.24	21.26	32.22	41.89	34.14	36.18	21.3
Merged-chr11-116624294-3	chr11	116624195	116624395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-43.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	68.24	57.35	56.48	50.68	70.77	103.79	51.15	45.45	96.18	95.4	78.39	55.76
Merged-chr16-57216189-3	chr16	57216099	57216299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14728.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	78.74	80.49	98.69	101.35	105.55	111.63	59.79	129.45	105.03	98.41	130.14	63.28
Merged-chr3-126625313-3	chr3	126625233	126625433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28382.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	35.94	18.61	37.08	59.12	45.41	41.08	34.88	59.47	79.46	52.22	78.39	52.63
Merged-chr10-115385695-3	chr10	115385567	115385767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033261, exon 1 of 35)	exon (NM_001033261, exon 1 of 35)	708.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	28.27	32.7	36.51	34.59	32.32	39.51	61.45	43.57	42.29	54.23	61.3	49.81
Merged-chr6-135350359-1	chr6	135350259	135350459	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12572.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	8.08	1.01	12.55	8.85	45.82	46.1	56.14	80.8	6.69	2.01	4.52	4.7
Merged-chr3-75556990-3	chr3	75556900	75557100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-148.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	258.83	247.76	255.56	263.04	278.6	312.95	271.05	362.33	387.28	375.07	449.22	218.03
Merged-chr19-16038048-1	chr19	16037948	16038148	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52973.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.42	1.76	4.56	5.63	11.45	5.02	2.99	10.4	4.92	4.02	3.52	5.64
Merged-chr11-44437959-3	chr11	44437863	44438063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32585.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	43.61	32.45	78.72	69.98	82.23	73.69	48.5	83.52	81.43	69.29	130.14	53.88
Merged-chr4-126110748-3	chr4	126110716	126110916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6859.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	50.88	67.16	46.78	30.57	57.68	112.26	66.43	36.25	69.23	70.29	62.81	27.57
Merged-chr5-3802966-4	chr5	3802894	3803094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	130.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	22.61	39.99	24.53	51.48	40.5	20.7	37.87	32.36	24.59	24.6	42.71	32.58
Merged-chr8-13674870-3	chr8	13674775	13674975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	2712.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	21.0	23.39	45.64	32.98	25.77	29.79	29.23	36.62	29.7	20.08	42.21	24.75
Merged-chr6-124829087-3	chr6	124829018	124829218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	366.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	142.14	143.87	166.57	133.13	170.19	212.29	134.53	160.85	190.98	238.5	271.84	132.83
Merged-chr10-99090069-3	chr10	99089982	99090182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17000.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	79.55	58.61	71.88	31.77	48.68	86.86	54.81	43.77	64.51	78.83	120.09	24.12
Merged-chr11-59809956-4	chr11	59809933	59810133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	6.0	NM_001271356	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	12.52	28.17	27.95	20.51	21.27	32.3	25.58	14.66	30.88	33.64	20.6	27.25
Merged-chr16-55747381-3	chr16	55747280	55747480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74758.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	68.24	86.27	93.55	99.75	81.0	90.94	76.07	85.85	105.62	113.48	90.95	56.39
Merged-chr4-136469789-3	chr4	136469694	136469894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	33.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	60.17	41.5	60.47	36.2	51.55	58.95	32.22	39.53	49.17	35.65	41.2	32.58
Merged-chrX-7605436-3	chrX	7605344	7605544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138603)	promoter-TSS (NM_138603)	-24.0	NM_138603	54638.0	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	39.57	36.47	41.07	60.33	45.82	37.63	26.57	38.05	60.97	44.19	58.79	34.77
Merged-chr8-95434945-3	chr8	95434826	95435026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-57.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	209.57	200.72	205.36	187.02	229.1	282.53	155.46	191.5	269.86	323.36	333.15	150.99
Merged-chr11-23633131-1	chr11	23633031	23633231	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027860, intron 1 of 21)	intron (NM_027860, intron 1 of 21)	500.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	5.25	10.31	5.7	3.22	4.5	9.72	10.3	8.47	13.57	7.03	8.54	8.46
Merged-chr1-134071658-1	chr1	134071558	134071758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7497.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.08	6.54	5.7	4.02	3.27	9.72	1.99	1.32	5.31	5.02	3.01	3.13
Merged-chr10-75146207-3	chr10	75146113	75146313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65860.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	48.86	37.98	57.62	58.32	67.91	74.63	47.5	106.85	65.69	42.68	80.4	49.81
Merged-chr19-56743741-3	chr19	56743655	56743855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21383.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	26.25	24.4	51.34	28.15	15.14	24.46	27.24	34.09	25.57	22.09	34.17	22.56
Merged-chr11-69122776-3	chr11	69122643	69122843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033041, exon 4 of 4)	exon (NM_033041, exon 4 of 4)	2290.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	31.09	26.41	23.96	26.14	37.23	36.37	16.28	23.94	29.7	32.13	45.22	21.3
Merged-chr6-145276423-3	chr6	145276308	145276508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25856.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	113.47	78.98	126.07	157.66	162.0	131.07	135.19	187.26	157.74	164.69	205.01	117.16
Merged-chr11-17005089-3	chr11	17004991	17005191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	RSINE1|SINE|B4	3627.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	132.44	149.91	164.86	197.48	185.73	161.8	130.54	182.16	173.48	169.71	268.33	134.7
Merged-chr17-73948294-3	chr17	73948206	73948406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1890.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	58.55	42.26	57.05	59.93	75.28	65.85	52.15	66.76	74.54	69.29	84.42	47.3
Merged-chr1-171390305-3	chr1	171390188	171390388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	1328.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	83.99	85.27	103.25	69.58	104.73	142.99	74.07	88.68	98.74	96.4	116.07	52.32
Merged-chr4-53122046-3	chr4	53121965	53122165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37830.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	110.24	84.01	154.02	127.1	186.14	162.74	130.88	185.33	170.92	135.57	216.57	111.84
Merged-chr10-41810257-6	chr10	41810146	41810346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-328.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	29.07	41.0	43.35	38.21	31.5	27.59	44.51	41.97	52.71	60.75	76.38	46.68
Merged-chr4-151842808-3	chr4	151842724	151842924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	18944.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	27.46	32.7	54.19	37.81	33.96	42.96	23.92	37.29	37.37	27.11	46.73	27.88
Merged-chr14-62347357-3	chr14	62347260	62347460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026001, intron 2 of 10)	intron (NM_026001, intron 2 of 10)	15292.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	107.81	89.8	118.65	49.47	78.55	102.22	65.11	64.63	103.65	70.29	110.55	52.0
Merged-chr8-126584427-5	chr8	126584344	126584544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	60.97	62.38	79.29	48.67	97.37	104.73	73.08	82.82	78.68	63.77	86.93	58.58
Merged-chr5-92118052-3	chr5	92117971	92118171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	19654.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	44.82	29.18	30.8	32.98	42.55	59.27	21.92	58.07	53.3	68.29	80.9	35.71
Merged-chr19-17176891-3	chr19	17176798	17176998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 10 of 19)	A-rich|Low_complexity|Low_complexity	162607.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	39.57	43.77	46.78	44.24	38.46	34.49	22.26	45.36	55.66	32.64	46.73	25.69
Merged-chr7-144937665-3	chr7	144937570	144937770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007631, intron 2 of 4)	intron (NM_007631, intron 2 of 4)	2255.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	29.07	23.64	32.52	20.51	27.0	31.36	16.94	20.78	46.22	30.13	57.28	30.07
Merged-chr4-58553306-3	chr4	58553219	58553419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172989)	promoter-TSS (NM_172989)	-26.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	39.17	49.05	59.33	42.23	43.36	43.9	36.87	42.45	49.76	42.18	50.75	24.12
Merged-chr9-56928352-3	chr9	56928197	56928397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175483)	promoter-TSS (NM_175483)	74.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	35.13	23.9	23.39	23.33	24.14	29.16	23.25	18.31	24.59	25.11	31.15	22.24
Merged-chr6-112696665-3	chr6	112696565	112696765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021385)	promoter-TSS (NM_021385)	5.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	38.76	41.5	17.11	34.19	19.64	37.94	23.25	30.9	64.32	33.14	44.22	33.21
Merged-chr7-31151078-3	chr7	31150981	31151181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	90.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	57.34	47.54	61.61	54.7	40.5	62.4	42.19	41.66	70.41	68.79	95.47	37.59
Merged-chr5-145280473-3	chr5	145280364	145280564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2879.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	32.3	37.98	43.35	36.6	32.32	46.1	27.24	36.06	59.6	46.7	86.43	21.62
Merged-chr17-56673236-3	chr17	56673130	56673330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027933)	promoter-TSS (NM_027933)	5.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	176.05	164.0	135.77	154.04	195.55	242.71	107.29	166.35	173.28	200.34	234.66	122.17
Merged-chrX-166230997-3	chrX	166230891	166231091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7952.0	NM_001177961	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	12.52	27.67	21.11	33.38	41.32	31.67	22.26	29.41	24.0	21.09	29.14	13.16
Merged-chr10-80434098-3	chr10	80433997	80434197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-444.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	121.54	120.73	143.76	125.89	153.41	173.72	90.68	118.21	155.78	151.64	176.37	89.91
Merged-chr16-91613170-3	chr16	91613065	91613265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	5834.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	40.38	15.34	28.52	20.91	31.5	34.18	23.92	31.18	47.99	44.19	50.75	27.25
Merged-chr7-92837370-3	chr7	92837257	92837457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029494)	TTS (NM_029494)	36890.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	39.17	34.21	63.89	45.05	71.18	89.68	51.15	86.89	76.51	60.25	83.41	45.74
Merged-chr8-86746148-3	chr8	86746053	86746253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009172)	promoter-TSS (NM_009172)	-147.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	60.17	44.52	53.05	39.01	63.41	61.15	38.53	53.52	62.94	79.33	82.91	47.62
Merged-chr4-129789726-3	chr4	129789649	129789849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30730.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	42.8	49.3	41.07	42.23	54.41	54.88	26.91	52.6	63.14	60.25	51.76	31.64
Merged-chr2-168955516-3	chr2	168955420	168955620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	67.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	29.88	32.7	30.23	61.13	49.09	37.0	63.11	40.65	36.58	31.13	53.77	40.1
Merged-chr4-126058525-3	chr4	126058430	126058630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-35.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	38.36	20.88	25.67	23.73	19.64	46.41	19.6	22.99	40.71	33.64	70.35	30.7
Merged-chr4-3712198-3	chr4	3712126	3712326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2738.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	37.15	29.18	30.23	19.71	45.0	37.94	37.87	30.87	42.68	27.11	49.75	23.18
Merged-chr10-39899187-3	chr10	39899074	39899274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033628)	promoter-TSS (NR_033628)	64.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	37.15	48.29	56.48	47.06	50.32	47.04	56.47	48.76	51.53	56.24	66.83	42.29
Merged-chr5-74705308-1	chr5	74705208	74705408	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2405.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	8.08	13.33	5.7	3.62	27.0	47.35	24.91	24.28	6.29	5.02	1.51	2.51
Merged-chr2-169928143-3	chr2	169928045	169928245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35042.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	54.51	40.75	65.03	44.24	81.82	40.14	78.39	86.38	66.87	49.71	103.51	32.58
Merged-chr10-57745638-3	chr10	57745549	57745749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39274.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	29.88	22.89	34.23	35.8	46.23	54.88	46.5	63.59	47.6	41.17	66.33	35.4
Merged-chr2-158167842-3	chr2	158167745	158167945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21453.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	37.96	29.43	63.89	49.87	70.37	47.98	117.92	99.28	73.36	48.2	93.46	61.4
Merged-chr16-29772780-3	chr16	29772677	29772877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	193443.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	43.21	22.39	43.35	38.61	42.14	39.82	44.84	73.51	32.45	29.62	56.28	28.51
Merged-chr4-154160780-3	chr4	154160695	154160895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-111.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	150.62	127.02	191.67	155.25	177.55	203.51	124.9	178.51	227.76	187.29	285.91	138.15
Merged-chr4-102608291-3	chr4	102608188	102608388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18445.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	37.15	21.13	47.35	38.21	33.14	26.03	29.23	28.49	22.03	4.02	20.1	6.58
Merged-chr8-72320312-3	chr8	72320201	72320401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008452, intron 2 of 2)	PB1D7|SINE|Alu	1239.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	31.5	24.9	23.39	16.89	33.96	31.04	19.6	12.7	44.45	53.73	58.29	27.57
Merged-chr6-140767477-3	chr6	140767379	140767579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140594.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	20.59	18.86	23.96	34.59	24.55	21.95	28.23	33.79	45.43	51.21	63.82	31.01
Merged-chr8-117055325-3	chr8	117055240	117055440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 13 of 42)	MIR|SINE|MIR	27109.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	96.51	83.76	107.25	121.06	129.69	112.26	93.34	146.19	117.23	140.59	146.22	82.39
Merged-chr13-28617654-3	chr13	28617559	28617759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	93214.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	60.57	44.27	89.56	81.24	87.14	84.04	97.66	129.87	101.88	73.31	87.93	65.79
Merged-chr2-164859833-3	chr2	164859732	164859932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-2124.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	35.53	27.92	35.37	31.37	51.96	46.72	42.19	61.79	45.04	38.16	49.24	26.31
Merged-chr13-113437765-3	chr13	113437641	113437841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65103.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	72.68	76.21	142.04	132.73	70.77	90.0	78.06	98.22	105.62	62.76	151.75	57.95
Merged-chr17-35051883-3	chr17	35051764	35051964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1621.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	44.82	67.41	57.62	59.53	83.87	99.09	58.79	83.75	121.95	99.92	114.57	62.97
Merged-chr15-80582729-3	chr15	80582652	80582852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289442, intron 1 of 7)	L3|LINE|CR1	10155.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	29.88	32.7	17.68	28.15	17.18	31.36	16.28	26.66	30.49	32.64	28.14	38.53
Merged-chr5-97355339-3	chr5	97355251	97355451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	36979.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	43.21	29.68	64.46	56.31	40.91	47.35	41.52	43.37	55.07	51.21	79.89	30.7
Merged-chr16-19979984-3	chr16	19979900	19980100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	3049.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	35.13	22.64	44.5	31.37	48.27	34.18	27.57	29.58	39.73	34.65	39.7	17.23
Merged-chr16-14352804-3	chr16	14352706	14352906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8752.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	69.45	68.67	63.89	56.71	72.41	89.05	51.82	57.25	107.0	103.94	96.98	51.06
Merged-chr15-58250186-3	chr15	58250074	58250274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-35282.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	84.39	70.18	85.0	84.06	107.19	137.66	96.66	91.99	105.23	97.91	87.93	57.95
Merged-chr1-160906321-3	chr1	160906238	160906438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-73.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	201.9	197.45	181.98	208.34	246.28	272.49	156.12	214.18	261.79	292.73	301.99	150.05
Merged-chr15-96562772-3	chr15	96562671	96562871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	79191.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	22.21	20.63	28.52	25.74	37.23	42.02	26.91	38.8	43.86	18.08	35.68	21.62
Merged-chr7-28339603-4	chr7	28339526	28339726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-907.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	30.69	26.66	12.55	23.33	17.18	16.31	21.92	22.6	29.11	34.65	41.2	21.62
Merged-chrX-47912566-3	chrX	47912531	47912731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177215, exon 1 of 24)	5' UTR (NM_177215, exon 1 of 24)	175.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	14.94	28.93	23.39	24.13	25.36	38.26	45.84	27.67	19.87	32.64	34.17	19.74
Merged-chrX-143352980-3	chrX	143352869	143353069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358592, intron 4 of 11)	intron (NM_001358592, intron 4 of 11)	41293.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	22.61	24.9	22.82	29.36	21.27	25.4	23.58	40.32	46.62	35.15	25.63	26.94
Merged-chr11-40733970-3	chr11	40733854	40734054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	293.0	NM_001290697	52653.0	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	20.59	34.96	17.11	27.35	30.68	31.67	47.17	31.23	33.24	34.14	42.21	34.15
Merged-chr3-18319649-3	chr3	18319559	18319759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76321.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	55.72	62.13	110.1	81.24	60.55	56.44	73.41	79.4	113.49	109.46	116.07	76.12
Merged-chr9-111552048-3	chr9	111551932	111552132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112951.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	21.4	15.59	35.37	35.39	31.91	19.13	12.95	30.48	37.37	35.15	38.19	23.49
Merged-chr12-85280393-3	chr12	85280303	85280503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	32.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	201.09	185.63	187.11	120.26	195.55	284.1	114.27	130.01	217.93	223.44	191.95	93.67
Merged-chr11-98785910-3	chr11	98785821	98786021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9595.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	90.85	68.67	66.17	47.46	79.78	103.79	50.82	57.76	95.2	78.33	96.48	45.11
Merged-chr19-45060379-3	chr19	45060282	45060482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25A|LTR|ERVK	12806.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	35.94	27.67	33.09	29.36	33.96	58.95	25.58	36.31	28.72	40.67	18.59	27.25
Merged-chr17-43058819-3	chr17	43058702	43058902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	MTD|LTR|ERVL-MaLR	42247.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	35.13	24.4	40.5	40.62	52.77	49.86	23.58	54.28	46.81	40.67	62.31	36.03
Merged-chr7-45466798-3	chr7	45466680	45466880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007527, exon 1 of 6)	5' UTR (NM_007527, exon 1 of 6)	118.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	47.65	55.34	41.07	45.45	34.36	43.59	43.18	36.36	51.53	53.22	48.74	45.74
Merged-chr9-103230426-3	chr9	103230329	103230529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-143.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	111.04	49.8	77.01	96.93	93.28	64.91	88.69	110.16	74.15	74.31	92.96	53.88
Merged-chr6-124415137-3	chr6	124415050	124415250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	-83.0	NM_175933	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	101.35	80.99	100.97	88.08	75.68	102.22	52.15	82.65	131.98	97.91	142.71	101.81
Merged-chr10-81384314-3	chr10	81384207	81384407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-121.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	136.08	138.84	102.11	115.83	132.96	187.2	139.51	152.27	176.43	217.91	240.69	129.69
Merged-chr15-5143774-4	chr15	5143683	5143883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355640)	promoter-TSS (NM_001355640)	-78.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	21.8	21.38	17.68	14.88	43.36	40.76	23.92	25.49	42.88	39.16	52.76	14.41
Merged-chr18-36771434-2	chr18	36771345	36771545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008214, intron 5 of 12)	intron (NM_008214, intron 5 of 12)	-5231.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	28.27	34.96	32.52	19.71	21.68	27.28	19.27	33.64	1.97	3.01	4.02	0.0
Merged-chr7-100227457-3	chr7	100227385	100227585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027629)	promoter-TSS (NM_027629)	-122.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	40.78	48.04	30.23	50.68	32.73	56.44	53.48	29.24	31.08	49.71	32.16	35.09
Merged-chr17-83709743-3	chr17	83709671	83709871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 2 of 16)	intron (NM_054082, intron 2 of 16)	3608.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	73.49	46.53	62.18	57.92	81.82	78.39	42.85	37.35	74.15	78.33	78.89	78.0
Merged-chr14-19950978-3	chr14	19950876	19951076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285909, intron 3 of 5)	intron (NM_001285909, intron 3 of 5)	25717.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	69.86	40.75	71.88	64.75	85.5	59.27	44.18	86.97	73.56	64.27	86.43	59.83
Merged-chr6-37427339-3	chr6	37427234	37427434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	14814.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	75.51	73.45	64.46	40.62	61.77	103.17	47.5	62.16	120.77	118.5	130.65	49.81
Merged-chr4-141147901-3	chr4	141147790	141147990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-32.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	44.42	35.72	47.92	30.97	32.73	56.13	18.93	27.25	72.18	67.78	83.91	52.32
Merged-chr7-118740688-3	chr7	118740587	118740787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027815, exon 1 of 31)	exon (NM_027815, exon 1 of 31)	416.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	84.8	71.18	80.43	71.19	77.32	102.85	54.81	63.7	102.47	97.41	112.56	47.93
Merged-chr11-83533434-3	chr11	83533324	83533524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2906.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	33.52	23.9	33.66	24.13	41.32	42.65	11.63	24.95	40.91	33.14	24.62	26.63
Merged-chr2-166745983-3	chr2	166745882	166746082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32150.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	25.84	24.4	27.95	18.5	23.32	34.18	22.26	23.44	41.3	28.62	39.7	15.66
Merged-chr4-116221543-1	chr4	116221443	116221643	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	-65.0	NM_001355584	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	34.73	43.26	41.07	37.0	31.09	39.2	31.89	27.14	44.45	48.7	63.82	30.39
Merged-chr19-4304405-3	chr19	4304307	4304507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1815.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	35.13	23.14	42.21	38.21	29.46	25.4	26.57	34.09	40.32	34.65	38.19	31.95
Merged-chr7-141435315-3	chr7	141435220	141435420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177576)	promoter-TSS (NM_001177576)	55.0	NM_001360723	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	52.49	43.01	41.64	47.46	54.0	47.98	41.85	42.93	55.07	59.25	56.78	28.82
Merged-chr16-91841092-3	chr16	91840917	91841117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	90613.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	40.78	59.36	32.52	57.11	34.77	60.21	42.19	61.26	59.4	55.23	71.86	44.48
Merged-chr6-87500006-3	chr6	87499908	87500108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-3681.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	41.19	46.78	65.03	49.47	51.55	51.11	35.21	53.47	36.19	42.18	63.82	28.19
Merged-chr19-44284276-3	chr19	44284178	44284378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9398.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	124.77	115.2	116.37	110.6	130.5	166.19	115.6	113.58	118.21	98.41	147.73	71.74
Merged-chr16-91415706-4	chr16	91415633	91415833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	9498.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	35.13	29.93	19.97	27.75	28.23	47.35	21.59	22.85	54.48	59.75	54.27	49.5
Merged-chr18-25883554-3	chr18	25883452	25883652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129395.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	55.32	50.05	104.96	95.72	81.41	98.46	96.99	148.82	108.38	106.45	157.78	91.79
Merged-chr19-11045186-3	chr19	11045129	11045329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	5337.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	45.23	38.99	29.09	23.73	38.05	21.95	22.59	24.42	33.24	41.17	53.26	16.92
Merged-chr13-38204892-3	chr13	38204811	38205011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	-28.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	68.65	49.05	69.03	75.61	70.77	81.84	35.54	76.68	76.71	67.78	108.03	53.26
Merged-chrX-152001837-3	chrX	152001739	152001939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016763)	promoter-TSS (NM_016763)	-57.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	26.65	27.92	24.53	24.53	40.5	31.36	18.93	40.21	43.07	36.15	65.32	26.31
Merged-chr13-97241101-3	chr13	97240978	97241178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-27.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	172.82	149.16	131.21	159.67	137.46	127.94	93.01	158.19	144.17	94.9	183.41	78.94
Merged-chr3-107333636-3	chr3	107333529	107333729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-340.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	70.26	73.45	70.17	61.54	92.46	116.96	52.82	66.25	141.22	99.92	119.09	66.1
Merged-chr7-142442811-3	chr7	142442674	142442874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009405, intron 1 of 5)	intron (NM_009405, intron 1 of 5)	306.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	54.51	40.75	51.91	65.96	60.14	34.81	40.19	59.3	57.24	49.71	65.32	48.56
Merged-chr7-67951012-3	chr7	67950905	67951105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1252.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	29.07	15.59	20.54	22.52	27.41	31.36	30.23	29.72	16.52	21.09	14.57	24.12
Merged-chr17-37270236-3	chr17	37270219	37270419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013819)	promoter-TSS (NM_013819)	85.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	59.76	78.98	42.21	67.57	45.0	96.27	62.45	45.59	94.61	91.38	92.96	89.91
Merged-chr11-117334270-3	chr11	117334161	117334361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	1948.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	23.42	28.67	27.38	26.55	38.86	28.85	19.27	29.64	39.73	30.13	39.19	25.37
Merged-chr11-121706617-3	chr11	121706524	121706724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4197.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	25.04	24.15	15.4	13.27	34.77	39.51	8.3	19.74	35.01	42.18	29.65	17.54
Merged-chr6-87394059-3	chr6	87393959	87394159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-5124.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	23.82	23.9	19.4	29.76	26.59	32.3	12.29	31.35	25.77	18.08	22.61	17.86
Merged-chr16-24626334-3	chr16	24626226	24626426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95529.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	40.78	42.26	58.19	30.57	61.77	87.8	56.8	38.66	59.6	79.33	52.26	41.66
Merged-chr9-99229596-3	chr9	99229486	99229686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001244762, exon 5 of 5)	exon (NM_001244762, exon 5 of 5)	7653.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	53.7	57.35	65.03	43.04	50.73	95.95	37.2	38.07	56.45	60.25	60.8	24.12
Merged-chr8-88300451-3	chr8	88300376	88300576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	6272.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	65.01	48.04	93.55	66.77	80.18	84.66	54.81	103.04	83.59	58.24	84.92	52.32
Merged-chr13-101867050-3	chr13	101866968	101867168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98851.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	51.69	57.6	64.46	65.96	55.23	63.97	49.83	71.58	89.3	68.29	84.92	73.3
Merged-chr15-25984306-3	chr15	25984193	25984393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-73.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	260.85	258.07	232.75	257.01	288.42	350.89	255.77	283.15	356.01	317.83	452.74	181.07
Merged-chr12-102173862-1	chr12	102173762	102173962	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	45135.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	2.42	4.53	6.85	0.0	19.23	21.64	13.29	24.45	2.36	1.51	6.03	5.33
Merged-chr1-181150956-3	chr1	181150834	181151034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030131)	promoter-TSS (NM_030131)	3.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	37.15	16.85	13.12	35.39	36.41	24.15	13.29	33.84	38.55	45.69	54.77	21.3
Merged-chr3-28032011-4	chr3	28031832	28032032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	47761.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	17.36	24.15	27.95	30.97	11.05	23.83	35.21	25.77	24.19	24.6	24.62	11.59
Merged-chr2-173528740-3	chr2	173528646	173528846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028158)	TTS (NM_028158)	6154.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	32.71	22.13	21.68	28.56	21.68	15.05	13.95	18.73	24.98	19.58	27.64	20.68
Merged-chr17-28257061-3	chr17	28256925	28257125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-14683.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	35.94	22.39	28.52	21.72	43.77	49.23	36.54	35.97	49.76	42.68	37.18	24.12
Merged-chr13-9173607-3	chr13	9173504	9173704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	79723.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	39.98	30.43	47.35	42.23	49.5	67.1	47.5	67.01	61.17	50.71	50.75	38.53
Merged-chr19-24999460-3	chr19	24999366	24999566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028785)	promoter-TSS (NM_028785)	-63.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	71.88	50.81	50.77	56.31	48.68	28.54	21.92	36.42	44.45	49.71	39.19	29.45
Merged-chr5-68049764-3	chr5	68049658	68049858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17923.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	26.25	40.5	31.38	35.8	27.0	26.97	18.27	17.33	45.24	31.63	45.73	20.05
Merged-chr10-68723272-3	chr10	68723196	68723396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	-450.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	47.65	54.58	49.06	47.46	54.82	56.13	62.78	52.4	94.8	69.79	99.49	55.13
Merged-chr5-138264009-3	chr5	138263917	138264117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153161)	promoter-TSS (NM_153161)	-28.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	32.3	25.15	35.37	33.78	29.05	36.37	30.56	24.56	30.29	25.61	38.69	25.69
Merged-chr6-34869668-3	chr6	34869565	34869765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	6519.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	145.37	82.75	108.39	100.55	106.78	117.9	110.61	131.69	106.41	123.52	123.61	57.01
Merged-chr14-60444370-3	chr14	60444279	60444479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	66093.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	50.88	35.72	48.49	45.05	45.0	55.82	30.89	35.92	47.99	53.22	31.66	40.1
Merged-chr6-72396135-3	chr6	72396019	72396219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5452.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	58.55	57.6	53.62	27.75	65.05	80.59	30.23	24.14	82.81	97.91	63.82	43.23
Merged-chr6-124903802-3	chr6	124903699	124903899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008479)	TTS (NM_008479)	7906.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	45.63	47.79	39.36	58.72	56.46	50.8	25.24	49.49	80.84	71.3	83.41	46.36
Merged-chr6-108710122-3	chr6	108710021	108710221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49187.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	27.86	19.37	26.81	28.15	33.96	33.24	12.95	27.56	43.66	29.62	50.25	18.48
Merged-chr11-69097121-3	chr11	69097000	69097200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1849.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	121.14	98.6	110.1	84.46	174.28	111.32	94.34	105.9	117.23	141.59	138.69	83.33
Merged-chr5-23434421-4	chr5	23434340	23434540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	11.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	21.4	17.61	11.98	11.66	20.05	35.12	8.97	18.95	37.57	45.69	56.78	20.05
Merged-chr2-121457110-3	chr2	121457009	121457209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026318)	promoter-TSS (NM_026318)	21.0	NM_026318	67693.0	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	21.0	17.86	19.4	26.55	34.36	26.97	13.29	29.41	27.34	36.15	29.14	21.3
Merged-chr15-66093692-3	chr15	66093578	66093778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	-116874.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	21.4	21.38	26.81	18.5	26.18	29.48	12.95	29.55	26.36	16.07	30.15	17.23
Merged-chr15-77945872-3	chr15	77945795	77945995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017983, intron 7 of 8)	intron (NM_001017983, intron 7 of 8)	10827.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	34.32	32.2	49.06	48.26	70.77	46.72	53.48	59.66	42.09	35.15	42.21	38.85
Merged-chr1-131096494-3	chr1	131096427	131096627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	1316.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	34.32	25.91	22.25	27.75	38.86	37.94	20.59	37.07	35.6	40.67	66.83	27.57
Merged-chr8-123009046-3	chr8	123008955	123009155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	33229.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	21.0	15.09	23.96	19.31	18.41	20.7	12.62	24.14	28.32	26.11	21.61	16.29
Merged-chr2-69861600-3	chr2	69861509	69861709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	47.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	62.59	54.08	35.37	55.1	67.09	58.95	29.56	54.42	80.25	53.73	83.41	42.92
Merged-chr3-95632925-3	chr3	95632816	95633016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019561)	TTS (NM_019561)	7936.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	24.23	21.63	24.53	27.35	20.86	20.07	23.58	37.4	32.45	32.64	34.17	30.7
Merged-chr11-3144899-2	chr11	3144807	3145007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 17 of 33)	exon (NM_030207, exon 17 of 33)	20886.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	20.59	38.74	29.09	45.05	55.64	42.33	65.44	52.4	0.2	0.0	0.5	0.0
Merged-chr19-38836557-3	chr19	38836452	38836652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362424)	promoter-TSS (NM_001362424)	-27.0	NM_145952	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	67.03	68.42	74.73	86.07	89.59	79.65	87.03	106.09	96.97	76.32	125.62	56.7
Merged-chr15-95822233-3	chr15	95822136	95822336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7836.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	126.39	101.37	120.94	106.99	152.19	198.49	125.89	161.58	180.36	176.24	194.96	102.12
Merged-chr7-45341496-3	chr7	45341386	45341586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029741, intron 25 of 29)	intron (NM_029741, intron 25 of 29)	6217.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	77.93	73.19	61.04	49.07	51.96	108.18	49.49	58.51	77.89	101.93	86.93	42.92
Merged-chr16-35983279-3	chr16	35983187	35983387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-76.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	62.59	66.4	47.35	65.96	48.68	91.88	38.86	62.66	95.0	104.94	129.64	60.77
Merged-chr6-90550725-3	chr6	90550626	90550826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027406)	promoter-TSS (NM_027406)	-67.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	60.97	35.21	39.36	35.39	44.59	46.1	36.87	67.6	59.4	40.67	74.87	24.75
Merged-chr8-70766516-1	chr8	70766416	70766616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_023065, exon 1 of 8)	exon (NM_023065, exon 1 of 8)	147.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	37.96	37.23	26.81	15.69	18.82	41.08	20.26	22.63	71.4	42.18	42.21	18.17
Merged-chr11-73193317-3	chr11	73193216	73193416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357891, intron 3 of 11)	intron (NM_001357891, intron 3 of 11)	5703.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	44.01	31.19	46.78	41.83	34.36	49.86	31.89	55.09	46.62	26.11	63.82	20.68
Merged-chr2-29125035-3	chr2	29124929	29125129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198033)	promoter-TSS (NM_198033)	37.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	104.18	92.56	108.96	96.93	119.46	155.22	69.09	109.85	148.5	133.56	195.47	81.45
Merged-chr18-77946966-3	chr18	77946863	77947063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 1 of 43)	MTE-int|LTR|ERVL-MaLR	8496.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	75.51	43.77	40.5	30.97	29.46	32.93	19.6	16.68	55.66	61.76	60.3	31.64
Merged-chr14-31323955-3	chr14	31323841	31324041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033668)	promoter-TSS (NM_001033668)	-45.0	NM_001033668	110084.0	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	38.36	20.37	17.68	24.94	43.36	34.81	21.59	26.58	31.27	33.64	32.66	20.99
Merged-chr6-31116559-3	chr6	31116467	31116667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	MIRb|SINE|MIR	-53474.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	94.89	65.4	180.26	135.54	141.96	108.81	140.51	213.31	110.93	99.42	174.36	78.0
Merged-chr7-100537073-3	chr7	100536960	100537160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-40.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	104.99	75.71	112.95	92.91	132.14	141.73	60.46	98.19	81.04	99.92	113.06	39.16
Merged-chrM-756-2	chrM	656	856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											47478.29	47924.88	53331.99	59634.96	41873.79	51705.96	56494.3	68127.61	0.0	0.0	0.0	0.0
Merged-chr5-121837086-3	chr5	121836972	121837172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-213.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	189.38	196.19	163.15	162.89	200.05	247.1	156.12	115.18	239.57	253.06	237.67	139.72
Merged-chr11-29497259-3	chr11	29497161	29497361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	17772.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	44.01	22.89	30.23	32.18	36.82	26.65	42.52	34.57	35.99	28.12	26.13	22.87
Merged-chr2-52959225-3	chr2	52959124	52959324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	101356.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	31.5	30.94	47.92	30.57	40.09	46.41	51.15	64.79	36.98	39.67	47.74	22.87
Merged-chr5-146247895-3	chr5	146247754	146247954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	L1MB8|LINE|L1	16604.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	81.16	59.86	106.1	92.91	84.68	98.46	81.38	90.14	92.44	92.39	137.68	83.33
Merged-chr19-10947392-3	chr19	10947253	10947453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	1913.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	51.28	52.07	73.02	49.47	75.28	85.29	77.73	71.86	73.36	79.33	66.83	36.65
Merged-chr4-11016726-3	chr4	11016638	11016838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9119.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	56.13	53.58	39.93	67.57	55.23	90.94	33.22	77.69	102.08	99.92	113.56	71.74
Merged-chr7-90041780-3	chr7	90041677	90041877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	12618.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	153.44	126.27	130.63	104.17	178.78	214.17	177.05	129.0	160.69	201.85	149.74	77.06
Merged-chr14-40967098-3	chr14	40966966	40967166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145928)	promoter-TSS (NM_145928)	-170.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	275.79	253.29	294.93	279.93	297.42	344.62	211.93	281.38	307.03	373.57	458.77	224.3
Merged-chr16-76241476-3	chr16	76241386	76241586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118873.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	27.86	19.62	45.07	41.43	22.09	35.12	32.55	66.25	24.19	29.62	35.68	26.0
Merged-chr12-102646758-3	chr12	102646650	102646850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	MIR3|SINE|MIR	38270.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	17.36	24.9	42.21	39.01	25.77	15.99	24.58	26.1	24.98	58.24	32.66	19.11
Merged-chr3-144207093-3	chr3	144206998	144207198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1843.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	19.79	25.66	31.38	6.44	18.0	38.26	16.94	14.52	28.52	28.62	25.12	13.78
Merged-chr11-59554361-3	chr11	59554247	59554447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 5 of 9)	RSINE1|SINE|B4	11661.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	31.5	36.72	25.1	21.72	59.73	70.55	18.6	25.37	62.74	51.21	49.75	29.76
Merged-chr10-44380713-3	chr10	44380639	44380839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21063.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	115.49	105.89	125.5	113.02	126.0	126.37	111.94	133.82	176.04	155.65	185.92	119.67
Merged-chr7-120835594-3	chr7	120835487	120835687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7244.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	65.82	49.05	70.74	53.89	59.32	80.59	24.25	53.3	124.31	103.43	74.37	72.68
Merged-chr17-35766544-3	chr17	35766386	35766586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5964.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	11.71	14.34	17.11	21.72	21.68	18.81	23.25	17.1	23.21	18.58	32.16	25.06
Merged-chr2-155613562-3	chr2	155613463	155613663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085378, exon 4 of 42)	exon (NM_001085378, exon 4 of 42)	2320.0	NM_001085378	668940.0	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	18.98	25.4	17.68	24.94	51.96	32.61	27.9	40.57	39.34	17.07	46.73	25.37
Merged-chr4-19570094-3	chr4	19569997	19570197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356481)	promoter-TSS (NM_001356481)	11.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	75.11	53.07	88.99	71.19	87.55	73.38	51.15	84.81	92.05	53.22	107.53	50.12
Merged-chr17-33563922-3	chr17	33563834	33564034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	L3b|LINE|CR1	8227.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	36.34	47.29	66.74	57.51	47.05	62.71	47.17	58.79	50.94	58.75	68.84	43.54
Merged-chr11-32349806-3	chr11	32349710	32349910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	1999.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	101.76	96.59	128.92	107.39	52.37	56.13	37.54	57.28	85.56	89.88	120.6	49.81
Merged-chr13-32801960-3	chr13	32801843	32802043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-87.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	209.57	200.72	190.53	209.55	229.51	256.82	193.66	262.23	278.51	294.23	344.7	193.91
Merged-chr9-85749411-3	chr9	85749286	85749486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-52.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	83.18	71.94	60.47	64.75	102.28	110.06	69.76	97.29	134.14	126.03	133.16	84.27
Merged-chr7-16924593-1	chr7	16924493	16924693	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-561.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	43.21	32.45	38.22	45.45	47.46	71.81	43.18	55.12	78.09	88.87	144.71	50.75
Merged-chr13-98815335-3	chr13	98815233	98815433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172591, exon 1 of 26)	5' UTR (NM_172591, exon 1 of 26)	116.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	156.67	146.14	136.91	164.5	157.1	156.47	125.89	147.87	177.81	168.71	211.55	105.26
Merged-chr5-43868869-3	chr5	43868769	43868969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	60.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	81.57	92.06	98.12	99.34	58.5	87.8	86.36	56.22	133.35	168.71	181.9	63.59
Merged-chr15-57923081-3	chr15	57922982	57923182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167679, exon 4 of 18)	exon (NM_001167679, exon 4 of 18)	10883.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	38.36	11.57	48.49	26.55	35.18	32.61	23.58	53.22	49.96	29.62	60.8	34.15
Merged-chr16-93798796-3	chr16	93798713	93798913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-3912.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	44.42	64.14	81.58	59.12	50.73	51.11	42.85	60.98	71.79	39.67	66.83	35.71
Merged-chr5-113016193-3	chr5	113016097	113016297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-659.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	50.07	34.21	35.94	32.58	33.14	46.72	23.58	22.26	37.76	40.67	54.77	18.17
Merged-chr8-117367637-3	chr8	117367529	117367729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	18459.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	29.48	22.13	81.58	41.43	73.23	38.88	80.05	115.21	56.45	38.66	101.5	54.2
Merged-chr1-86528289-3	chr1	86528186	86528386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	CpG-365	1729.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	99.33	94.32	86.14	92.91	110.05	93.76	93.01	82.46	107.98	117.99	142.71	88.03
Merged-chr6-125367883-3	chr6	125367793	125367993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	12611.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	154.65	136.08	207.08	168.92	149.73	150.83	137.19	161.92	153.02	159.67	220.59	100.56
Merged-chr4-9649626-3	chr4	9649572	9649772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5955.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	24.63	28.93	23.96	35.8	46.23	31.67	39.53	42.45	38.16	29.12	54.27	31.64
Merged-chr6-134220460-3	chr6	134220365	134220565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-175864.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	81.57	76.72	85.0	82.05	88.37	90.0	100.32	94.51	109.56	103.94	93.46	66.41
Merged-chr17-56079492-2	chr17	56079395	56079595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-136.0	NM_001304784	15193.0	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfl2	HRP-2|Hdgfrp2	HDGF like 2	protein-coding	245.51	251.28	215.63	233.28	283.92	366.57	237.5	237.0	356.4	333.9	441.18	228.06
Merged-chr2-153199298-3	chr2	153199191	153199391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26150.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	67.84	43.51	67.31	44.24	62.18	77.14	40.19	61.21	63.33	72.3	96.98	57.95
Merged-chr1-38129950-3	chr1	38129842	38130042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359287)	promoter-TSS (NM_001359287)	-276.0	NM_001359288	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	47.24	72.19	56.48	39.82	67.09	99.4	58.46	53.27	85.95	85.86	109.04	45.42
Merged-chr8-119558852-3	chr8	119558759	119558959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019709)	promoter-TSS (NM_019709)	-98.0	NM_019709	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	95.3	69.92	90.13	82.45	124.37	131.39	52.48	83.47	162.27	192.81	184.41	84.27
Merged-chr10-30811093-3	chr10	30810999	30811199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7773.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	50.47	44.02	65.6	55.91	74.87	54.25	31.22	42.59	73.17	60.25	51.25	34.77
Merged-chr14-31166231-3	chr14	31166130	31166330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	2411.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	100.95	69.17	96.98	69.58	151.78	137.66	150.14	135.48	108.18	110.97	127.13	66.73
Merged-chr12-87260721-3	chr12	87260614	87260814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134044, exon 3 of 19)	exon (NM_134044, exon 3 of 19)	3530.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	39.17	54.08	42.21	36.6	38.05	42.02	27.57	39.06	30.68	42.18	33.16	28.82
Merged-chr6-88903924-3	chr6	88903818	88904018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1667.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	37.55	36.22	38.79	35.8	33.55	50.49	31.89	57.25	54.48	47.2	37.18	40.41
Merged-chr15-98506430-3	chr15	98506331	98506531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8957.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	62.18	35.47	59.9	59.12	82.23	66.16	50.16	66.06	77.89	55.73	99.99	55.13
Merged-chr7-45017716-3	chr7	45017620	45017820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-222.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	298.4	230.65	328.01	257.41	266.33	342.42	216.58	227.92	261.2	271.14	287.92	176.37
Merged-chr1-74241048-1	chr1	74240948	74241148	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	4531.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	4.44	3.77	7.99	4.02	4.09	4.08	8.64	11.89	4.72	4.52	4.02	5.33
Merged-chr5-130029333-3	chr5	130029217	130029417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007761)	promoter-TSS (NM_007761)	11.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	50.07	52.07	59.33	31.77	54.41	47.35	43.18	62.27	74.54	65.78	69.85	43.54
Merged-chrX-7841229-3	chrX	7841141	7841341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138604)	promoter-TSS (NM_138604)	-590.0	NM_001290536	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	101.35	93.57	96.41	105.78	134.19	105.67	81.38	93.31	132.57	117.99	145.72	84.9
Merged-chr17-35331529-2	chr17	35331429	35331629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10804.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	34.32	25.91	40.5	21.72	30.27	18.5	19.6	27.34	0.0	0.0	0.5	3.13
Merged-chr2-3519992-3	chr2	3519892	3520092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177647, intron 2 of 3)	RMER10A|LTR|ERVL	6927.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	24.23	26.91	49.63	34.99	20.05	26.65	18.6	26.52	36.58	31.13	30.65	16.92
Merged-chr13-62624122-3	chr13	62624018	62624218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324406)	promoter-TSS (NM_001324406)	64.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	31.09	47.29	53.62	77.22	52.77	59.58	66.1	54.84	89.1	88.87	133.16	76.12
Merged-chr5-100656502-3	chr5	100656380	100656580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	17776.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	152.23	194.18	219.06	197.88	197.6	228.91	147.82	159.65	212.82	224.44	273.85	154.44
Merged-chr1-143929911-1	chr1	143929811	143930011	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74238.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	1.51	1.14	4.02	3.27	5.33	9.63	13.68	4.33	8.54	5.53	2.82
Merged-chr11-75486689-3	chr11	75486590	75486790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-87.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	150.21	132.05	154.59	128.7	180.01	179.05	95.33	110.24	176.63	137.58	177.38	88.65
Merged-chr15-98534340-3	chr15	98534219	98534419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289437)	promoter-TSS (NM_001289437)	-50.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	147.79	109.92	128.92	128.7	120.69	198.49	92.68	149.72	200.03	177.75	234.66	129.07
Merged-chr2-126499909-3	chr2	126499821	126500021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-74.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	30.28	19.62	31.38	37.81	41.32	41.08	28.9	36.11	41.5	40.67	47.23	37.59
Merged-chr8-33929350-3	chr8	33929246	33929446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	517.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	98.53	94.57	65.6	39.42	57.68	141.11	72.75	66.59	158.73	146.61	129.64	55.13
Merged-chr17-13660101-3	chr17	13659976	13660176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-100465.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	39.17	35.97	90.7	53.49	69.55	59.89	40.86	73.07	71.99	74.31	86.43	53.26
Merged-chr10-10321330-3	chr10	10321231	10321431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150983.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	104.18	104.38	77.58	78.83	101.46	143.62	65.11	108.31	106.41	92.39	121.6	46.36
Merged-chr10-78392340-3	chr10	78392235	78392435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16210.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	74.3	76.72	65.6	90.9	90.82	87.8	60.46	92.83	60.58	62.26	69.85	40.72
Merged-chr9-45246277-3	chr9	45246197	45246397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	20410.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	86.01	113.69	115.23	123.07	118.23	158.98	101.64	94.43	126.47	158.16	126.12	73.62
Merged-chr2-17643121-1	chr2	17643021	17643221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028757, intron 2 of 6)	L1MB3|LINE|L1	79607.0	NR_105847	102465964.0		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	1.21	2.26	5.7	4.83	10.23	2.82	24.58	22.46	6.1	3.01	2.51	2.51
Merged-chr16-21913540-3	chr16	21913453	21913653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	21584.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	41.59	43.51	43.35	50.27	64.23	48.6	12.95	39.34	59.99	57.74	56.28	48.56
Merged-chrX-13208154-3	chrX	13208057	13208257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28126.0	NR_045430	72122.0	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	55.72	49.3	31.38	30.16	60.14	72.75	36.87	41.69	73.36	79.83	74.87	32.27
Merged-chr6-50114443-3	chr6	50114346	50114546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	3586.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	65.82	62.63	85.57	86.47	85.91	75.57	57.13	107.44	56.25	42.68	69.34	33.52
Merged-chr19-45660494-3	chr19	45660390	45660590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013907)	promoter-TSS (NM_013907)	-297.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	25.44	25.4	21.11	26.95	27.0	25.4	10.96	21.98	32.45	25.61	56.78	26.63
Merged-chr1-152768262-3	chr1	152768165	152768365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	1723.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	27.46	26.41	19.97	29.76	33.14	51.43	10.96	37.46	39.14	45.69	47.23	22.56
Merged-chr13-52929651-3	chr13	52929545	52929745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016709)	promoter-TSS (NM_016709)	32.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	83.18	42.76	71.31	47.06	65.46	74.63	42.52	71.8	106.21	107.45	130.65	54.51
Merged-chr19-38054451-3	chr19	38054375	38054575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-509.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	32.3	31.19	30.23	41.43	30.27	37.63	54.81	30.31	42.68	58.24	67.84	37.59
Merged-chr1-144268167-6	chr1	144268049	144268249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-19045.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	11.71	15.59	19.97	32.58	34.77	24.15	28.9	27.11	23.6	30.63	33.16	22.87
Merged-chr8-119437048-3	chr8	119436947	119437147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-115.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	177.67	176.82	196.24	128.7	200.46	220.76	146.82	173.55	244.88	250.55	247.22	144.73
Merged-chr19-10577317-3	chr19	10577167	10577367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302218)	promoter-TSS (NM_001302218)	110.0	NM_001282064	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	18.17	23.9	29.66	37.0	24.96	27.28	22.59	16.74	20.46	30.13	25.12	24.75
Merged-chr14-79587482-5	chr14	79587392	79587592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-168.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	58.55	35.97	30.23	41.02	60.96	67.1	66.1	35.52	73.36	84.86	64.32	49.81
Merged-chr3-58415977-1	chr3	58415877	58416077	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1257.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	8.88	14.84	4.56	7.24	14.73	7.84	17.27	11.47	14.16	20.59	13.06	8.77
Merged-chr14-59297581-3	chr14	59297470	59297670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172603)	promoter-TSS (NM_172603)	-48.0	NM_172603	219131.0	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	27.46	23.9	51.91	43.44	28.23	32.61	37.54	23.8	34.22	25.61	61.3	34.77
Merged-chr12-12225830-3	chr12	12225730	12225930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36309.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	103.78	62.88	89.56	96.93	95.32	97.83	98.32	122.22	173.28	156.66	158.28	109.33
Merged-chr12-21316419-3	chr12	21316327	21316527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	35.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	46.44	54.58	58.19	57.51	55.64	78.08	73.08	64.37	46.22	39.67	42.71	38.85
Merged-chr12-32199605-3	chr12	32199523	32199723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020272, intron 4 of 10)	intron (NM_020272, intron 4 of 10)	8715.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	23.02	19.37	31.95	36.2	27.41	26.34	29.23	48.5	26.55	29.62	27.13	13.47
Merged-chr1-157048309-3	chr1	157048196	157048396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60354.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	25.44	20.37	42.78	30.57	15.14	19.76	12.62	24.56	41.11	22.09	28.64	26.0
Merged-chr1-183979968-3	chr1	183979848	183980048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54050.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	141.33	142.87	175.13	236.49	123.96	133.58	120.58	120.95	130.6	126.53	161.8	102.44
Merged-chr18-84355430-3	chr18	84355313	84355513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234091.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	42.4	37.98	38.79	57.51	46.64	44.84	38.86	58.77	42.09	49.21	74.87	39.16
Merged-chr4-123551989-3	chr4	123551897	123552097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-64423.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	38.76	35.47	42.78	34.59	46.23	49.86	32.88	47.24	45.24	37.16	55.78	25.06
Merged-chr2-34905147-3	chr2	34905091	34905291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8785.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	279.43	239.96	291.5	274.7	298.65	381.93	222.22	251.44	355.22	377.08	508.51	219.91
Merged-chr13-75797948-3	chr13	75797845	75798045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41940.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	120.33	96.59	140.33	138.76	155.05	167.76	145.49	181.29	177.61	186.28	245.21	91.79
Merged-chr1-91540545-3	chr1	91540454	91540654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-11.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	189.38	173.81	194.53	170.93	200.87	225.46	217.57	225.59	250.58	246.53	320.08	157.89
Merged-chr8-66440165-3	chr8	66440051	66440251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	46379.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	23.02	17.36	18.83	28.56	26.18	43.59	28.9	31.09	31.67	27.11	34.17	17.86
Merged-chr9-13296625-3	chr9	13296541	13296741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49685.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	78.74	59.61	62.75	52.69	81.0	82.16	46.5	72.28	73.56	84.86	102.51	34.46
Merged-chr18-8694247-3	chr18	8694109	8694309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-518647.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	21.4	28.42	29.66	39.01	0.0	0.0	0.0	0.0	44.65	54.73	52.26	38.53
Merged-chr1-176814761-3	chr1	176814665	176814865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151682, exon 1 of 17)	non-coding (NR_151682, exon 1 of 17)	105.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	164.34	176.07	152.88	212.36	143.19	185.32	120.25	179.08	201.02	194.31	320.08	127.19
Merged-chr15-75981946-3	chr15	75981848	75982048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163518, exon 1 of 1)	exon (NM_001163518, exon 1 of 1)	337.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	56.13	47.54	62.18	84.46	68.32	69.93	79.39	95.38	64.51	60.25	97.98	34.15
Merged-chr2-145434275-3	chr2	145434179	145434379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	120703.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	35.13	29.43	44.5	27.75	26.59	37.32	18.93	27.64	38.55	37.16	45.22	20.68
Merged-chr7-4877013-3	chr7	4876905	4877105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-48.0	NM_001101598	664994.0	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	163.94	153.18	181.98	200.3	165.69	196.61	126.56	182.33	222.45	211.89	247.22	107.14
Merged-chr16-8769324-3	chr16	8769241	8769441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30999.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	33.11	44.27	27.95	32.18	32.73	37.0	26.91	28.12	28.32	23.6	45.22	19.74
Merged-chr11-6547229-1	chr11	6547129	6547329	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190343, intron 1 of 8)	CpG	342.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	19.38	15.09	26.81	9.65	29.86	30.73	17.27	25.26	31.27	43.68	31.66	16.6
Merged-chr1-40322037-3	chr1	40321929	40322129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2560.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	50.47	37.23	60.47	62.34	67.5	50.49	52.15	76.43	56.65	60.75	90.45	52.63
Merged-chr4-59888188-3	chr4	59888065	59888265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 6 of 8)	intron (NM_172468, intron 6 of 8)	26891.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	28.67	23.14	30.23	46.25	55.23	39.51	46.17	67.49	31.67	36.15	37.69	29.13
Merged-chr8-34865760-1	chr8	34865660	34865860	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 11 of 26)	intron (NM_175091, intron 11 of 26)	58150.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.0	1.76	0.0	0.0	13.91	17.56	9.97	16.54	3.34	3.51	0.5	0.94
Merged-chr15-84996072-3	chr15	84995984	84996184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8113.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	23.82	25.66	14.83	24.94	32.73	39.51	37.2	34.04	65.3	56.24	51.76	31.01
Merged-chr11-54885118-3	chr11	54885036	54885236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17718.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	42.8	43.01	83.86	75.21	78.96	63.34	69.76	82.82	57.24	61.76	83.41	41.35
Merged-chr1-191756749-3	chr1	191756637	191756837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 4 of 7)	intron (NM_001134829, intron 4 of 7)	38342.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	27.86	26.91	34.23	41.43	35.18	23.2	33.55	49.04	36.39	35.15	48.24	24.75
Merged-chr13-112787206-2	chr13	112787093	112787293	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-13584.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	1.51	0.0	0.0	20.86	26.97	21.92	27.56	45.63	39.67	34.17	29.45
Merged-chr11-3135438-2	chr11	3135334	3135534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 27 of 33)	exon (NM_030207, exon 27 of 33)	11413.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	16.56	20.63	21.11	21.72	37.23	15.37	16.28	14.61	0.0	1.51	0.0	0.94
Merged-chr9-46009851-3	chr9	46009736	46009936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357241, intron 1 of 5)	MIR|SINE|MIR	2854.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	41.59	30.94	47.35	54.3	58.09	35.12	16.61	29.61	62.94	31.13	74.87	29.13
Merged-chr5-65137937-3	chr5	65137838	65138038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	6707.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	23.82	31.44	31.38	24.94	24.14	29.79	21.92	38.8	27.93	34.14	29.14	29.13
Merged-chr13-98814713-3	chr13	98814642	98814842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	CpG	707.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	19.79	14.34	18.83	18.5	29.05	25.71	22.26	18.28	22.23	23.6	29.14	26.94
Merged-chr6-39781511-3	chr6	39781418	39781618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	18.17	21.63	8.56	17.7	15.96	17.87	20.26	10.09	28.72	36.65	32.16	19.42
Merged-chr13-59557374-3	chr13	59557287	59557487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284218)	promoter-TSS (NM_001284218)	-40.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	39.98	67.66	61.04	34.59	51.55	47.35	38.2	45.14	107.39	72.3	107.53	62.34
Merged-chrX-167210358-3	chrX	167210263	167210463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1145.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	95.3	79.73	75.87	78.43	74.46	64.6	53.15	77.1	89.69	72.81	104.52	55.13
Merged-chr16-36714362-3	chr16	36714289	36714489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	20411.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	19.79	17.1	16.54	20.11	30.27	38.26	14.95	32.69	28.91	45.19	42.71	16.6
Merged-chr2-129549946-3	chr2	129549868	129550068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13366.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	36.34	40.75	50.2	33.78	44.59	77.77	39.86	35.64	33.63	40.17	58.79	20.68
Merged-chr11-69099363-3	chr11	69099277	69099477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	428.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	25.04	12.07	23.96	18.5	44.18	27.91	22.26	21.0	18.88	33.64	29.65	26.94
Merged-chr16-26581636-3	chr16	26581558	26581758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134103)	promoter-TSS (NM_134103)	-47.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	113.47	86.02	106.68	133.53	127.64	116.02	130.88	174.67	120.37	92.89	174.86	57.95
Merged-chr8-119605209-3	chr8	119605116	119605316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021441)	promoter-TSS (NM_021441)	24.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	52.49	36.72	43.35	59.53	42.14	55.5	31.89	47.02	60.58	49.21	45.22	30.7
Merged-chr7-65693486-3	chr7	65693376	65693576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	59.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	55.32	39.49	60.47	46.25	69.96	70.55	55.14	68.47	55.66	71.8	85.92	48.56
Merged-chr7-127346154-3	chr7	127346059	127346259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-845.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	44.42	25.91	34.23	31.37	37.23	39.82	15.61	31.43	43.66	68.29	58.29	36.03
Merged-chr12-8433071-3	chr12	8432992	8433192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	66917.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	19.79	18.86	28.52	28.15	40.5	36.37	49.16	50.3	29.9	29.12	35.68	26.94
Merged-chr11-43368638-3	chr11	43368504	43368704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5857.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	103.78	97.84	105.53	82.85	113.73	166.51	100.32	93.62	162.86	152.64	130.65	82.08
Merged-chr2-73386694-3	chr2	73386617	73386817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190297)	promoter-TSS (NM_001190297)	-237.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	297.6	305.61	330.29	264.65	328.51	375.35	253.45	315.53	429.76	500.1	543.69	286.64
Merged-chr19-5406590-1	chr19	5406490	5406690	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-225.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	28.72	14.06	29.14	12.53
Merged-chr2-167805927-5	chr2	167805825	167806025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114748.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	13.73	15.09	14.26	14.88	24.14	30.73	15.28	14.02	21.05	14.06	25.63	23.49
Merged-chr15-25605589-3	chr15	25605531	25605731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16919.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	47.24	55.59	61.04	54.7	48.68	56.76	77.06	61.91	50.55	38.66	67.84	21.3
Merged-chr10-14133105-3	chr10	14133015	14133215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 5 of 9)	intron (NM_001358782, intron 5 of 9)	166736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	48.05	38.99	52.48	27.35	47.05	67.1	34.21	43.65	61.37	59.75	47.74	25.37
Merged-chr17-49429275-3	chr17	49429175	49429375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	911.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	73.89	59.11	75.87	41.83	79.37	104.42	59.13	64.26	108.18	72.3	111.55	41.35
Merged-chr16-11253477-3	chr16	11253358	11253558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035466)	TTS (NR_035466)	867.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	23.42	29.43	22.25	31.77	22.91	16.93	28.23	21.9	33.24	29.62	31.15	26.0
Merged-chr10-88357167-3	chr10	88357058	88357258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-83.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	83.18	100.61	109.53	103.37	121.91	151.14	107.62	117.45	140.63	119.5	162.3	75.18
Merged-chr1-53774208-3	chr1	53774125	53774325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	10990.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	51.69	42.01	65.6	52.29	49.91	53.31	27.24	54.98	59.6	45.19	64.82	39.78
Merged-chr7-101551700-3	chr7	101551586	101551786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033804)	TTS (NR_033804)	4116.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	118.31	129.29	132.92	131.52	138.28	229.85	116.59	104.22	159.32	160.17	150.24	88.65
Merged-chr1-34849889-6	chr1	34849792	34849992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175421)	promoter-TSS (NM_175421)	-67.0	NM_145516	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	20.19	21.88	7.99	26.14	28.64	24.15	21.26	29.92	44.25	36.65	43.72	26.63
Merged-chr3-65188022-3	chr3	65187941	65188141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-62.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	20.59	15.85	26.24	19.71	39.27	13.8	19.93	24.87	24.78	19.08	25.63	20.99
Merged-chr11-90234673-3	chr11	90234549	90234749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-14827.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	36.34	42.76	42.78	25.34	51.55	77.45	24.58	39.53	60.58	42.68	54.27	22.56
Merged-chr2-70968509-3	chr2	70968405	70968605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	49869.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	28.67	23.64	63.32	71.19	41.32	61.46	53.48	80.69	57.83	50.21	89.44	50.12
Merged-chr17-5492556-3	chr17	5492461	5492661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-39.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	79.55	55.08	172.28	125.89	121.91	101.91	113.27	156.2	110.74	110.97	229.63	113.72
Merged-chr4-134730136-3	chr4	134730034	134730234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-25844.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	41.99	34.46	63.89	26.14	38.86	45.47	47.83	53.19	36.58	30.13	59.8	35.4
Merged-chr14-79549643-3	chr14	79549551	79549751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	33977.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	29.07	24.4	28.52	30.57	51.55	43.9	23.92	48.03	63.33	43.18	43.21	30.07
Merged-chr2-173020032-3	chr2	173019908	173020108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1894.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	42.4	36.47	33.09	44.24	65.05	49.23	40.52	44.92	41.3	38.66	53.77	33.21
Merged-chr11-106623827-3	chr11	106623735	106623935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-10905.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	34.32	47.29	75.87	63.15	51.14	65.54	57.8	77.38	56.45	48.2	85.92	48.56
Merged-chr5-108246523-3	chr5	108246427	108246627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22370.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	53.3	52.82	87.85	70.79	47.46	96.58	75.4	58.82	45.04	50.71	53.26	23.49
Merged-chr2-158174684-3	chr2	158174605	158174805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17303.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	69.86	53.83	104.39	64.75	90.82	95.33	84.7	109.37	111.33	106.45	125.62	74.87
Merged-chr3-137947036-3	chr3	137946927	137947127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28472.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	25.04	33.96	39.93	22.52	65.87	67.1	37.87	41.75	44.45	58.75	46.73	22.24
Merged-chr16-77030604-3	chr16	77030510	77030710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	16541.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	85.2	60.62	95.84	81.65	110.87	115.71	108.95	103.32	97.95	105.44	118.59	57.64
Merged-chr8-12756953-3	chr8	12756856	12757056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293667)	promoter-TSS (NM_001293667)	-60.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	29.07	17.86	26.81	17.7	45.41	41.39	34.21	51.53	40.52	47.2	75.87	25.69
Merged-chr3-58672164-3	chr3	58672062	58672262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20120.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	33.52	36.22	32.52	24.94	44.59	51.43	30.89	43.63	42.68	39.16	52.76	17.23
Merged-chr11-119377541-3	chr11	119377421	119377621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 14 of 16)	intron (NM_178743, intron 14 of 16)	-12951.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	38.76	29.93	53.62	28.15	88.37	82.47	68.76	78.34	106.01	113.98	124.11	87.4
Merged-chr18-3281918-3	chr18	3281821	3282021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-174.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	51.28	43.77	65.6	78.43	39.68	35.75	73.74	78.28	74.74	53.22	92.46	65.16
Merged-chr11-68863983-3	chr11	68863856	68864056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10825.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	37.15	28.67	45.64	34.19	54.0	41.39	32.22	31.26	37.17	52.22	58.79	27.57
Merged-chrX-48424814-3	chrX	48424715	48424915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	38317.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	44.01	41.75	60.47	36.6	37.23	49.23	41.19	56.38	63.14	62.76	71.86	36.65
Merged-chr6-48086127-3	chr6	48086036	48086236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362062, intron 1 of 5)	CpG	457.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	16.15	13.33	11.41	18.9	15.55	15.68	27.24	22.99	25.77	17.07	29.14	22.87
Merged-chr12-100202044-3	chr12	100201961	100202161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313934, intron 1 of 5)	AmnSINE1|SINE|Deu	1917.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	61.78	39.99	53.62	60.33	55.23	82.16	60.12	79.35	76.31	78.33	61.81	45.74
Merged-chr10-81167879-3	chr10	81167788	81167988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-168.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	182.52	169.28	139.76	125.89	155.87	238.32	130.88	117.59	247.63	222.93	194.46	139.72
Merged-chr8-66334448-3	chr8	66334344	66334544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-51857.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	37.55	39.49	34.23	62.34	45.0	57.07	42.52	73.15	50.16	39.67	61.3	48.56
Merged-chr4-133056211-3	chr4	133056106	133056306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	44700.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	17.36	13.08	38.22	17.7	51.55	29.79	10.63	24.7	40.91	41.17	32.16	25.37
Merged-chr5-32138565-3	chr5	32138462	32138662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2090.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	23.02	14.59	30.23	33.38	33.14	38.57	36.87	38.24	43.07	19.08	59.8	38.22
Merged-chr3-40846815-3	chr3	40846708	40846908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	46.0	NM_028140	72175.0	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	221.28	226.63	219.06	263.04	290.05	315.77	232.52	203.83	300.74	308.29	371.84	172.3
Merged-chr1-134083838-3	chr1	134083737	134083937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4682.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	29.48	37.98	67.31	61.94	51.96	59.89	44.84	72.06	60.58	28.62	98.49	48.56
Merged-chr7-38267816-2	chr7	38267662	38267862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025390, intron 2 of 6)	intron (NM_025390, intron 2 of 6)	3586.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	16.96	15.85	35.37	20.51	19.64	15.68	17.27	18.0	4.92	5.52	5.02	1.88
Merged-chr5-122354361-3	chr5	122354302	122354502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	74.0	NR_152872	56433.0	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	86.82	71.69	49.63	47.86	93.68	90.62	41.52	50.13	87.53	100.42	91.95	78.63
Merged-chr8-122946026-3	chr8	122945912	122946112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	96272.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	33.92	34.71	37.08	47.86	49.91	29.79	17.61	37.99	49.37	39.67	75.87	24.43
Merged-chr8-128605771-3	chr8	128605617	128605817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-79937.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	20.59	22.13	39.36	32.98	42.55	43.59	26.91	67.68	26.75	24.1	56.78	24.75
Merged-chr7-101363641-3	chr7	101363569	101363769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-14453.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	39.17	36.22	39.93	28.96	64.64	60.52	57.8	59.27	58.81	37.16	92.46	30.7
Merged-chr17-46880000-3	chr17	46879898	46880098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10623.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	37.15	24.65	38.79	35.8	46.23	82.16	67.76	55.32	43.66	60.25	50.25	19.42
Merged-chr2-156415856-3	chr2	156415760	156415960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-5049.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	42.4	32.7	62.18	44.24	38.46	44.84	25.24	32.89	52.71	48.2	67.84	25.37
Merged-chr10-127632129-3	chr10	127632009	127632209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10877.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	86.41	93.57	96.41	108.59	156.69	148.63	120.58	124.35	125.09	120.51	169.84	63.28
Merged-chr3-138443097-3	chr3	138442984	138443184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-9.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	123.16	85.77	123.22	125.08	140.73	165.25	95.67	157.51	202.2	166.7	277.87	89.59
Merged-chr1-93512030-3	chr1	93511937	93512137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145519)	promoter-TSS (NM_145519)	-67.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	154.25	146.64	187.68	149.62	187.37	195.04	161.77	239.36	220.29	196.83	248.73	122.17
Merged-chr5-23432912-3	chr5	23432812	23433012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	1441.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	90.85	123.75	115.23	106.99	157.1	136.4	107.96	139.46	177.41	180.26	189.94	108.08
Merged-chr6-106769151-3	chr6	106769104	106769304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	66.0	NM_001242360	70047.0	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	82.78	64.39	75.3	46.25	82.64	94.07	66.77	83.58	89.49	108.96	75.37	40.72
Merged-chr2-124626624-3	chr2	124626515	124626715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	16319.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	24.23	26.41	41.64	25.34	38.46	41.71	30.89	49.74	62.15	33.14	42.21	28.19
Merged-chr2-48766758-3	chr2	48766667	48766867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47342.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	77.53	66.4	73.59	80.44	69.14	93.76	96.99	105.36	101.29	104.94	142.71	86.15
Merged-chr11-83066869-3	chr11	83066771	83066971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	1759.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	60.97	63.64	65.6	46.25	63.82	89.68	51.82	71.41	83.2	90.88	84.92	43.86
Merged-chr15-75857313-5	chr15	75857219	75857419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5020.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	35.94	21.13	31.95	29.76	37.23	43.59	33.88	31.71	35.8	46.7	42.71	41.66
Merged-chr15-78597044-3	chr15	78596954	78597154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	7.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	41.99	36.72	49.63	45.45	59.73	62.09	53.15	67.09	67.07	54.73	73.36	36.03
Merged-chr7-28811429-3	chr7	28811318	28811518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177301, intron 1 of 12)	CpG	528.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	62.18	45.02	63.32	71.99	48.68	80.27	47.17	62.24	71.2	69.79	63.82	57.01
Merged-chr13-37620042-4	chr13	37619956	37620156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205982.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	39.98	60.62	48.49	49.47	55.23	94.39	85.04	55.99	70.22	58.24	87.43	46.68
Merged-chr11-69411821-3	chr11	69411717	69411917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	1858.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	68.24	57.1	33.09	37.0	70.77	79.65	41.85	52.85	110.93	75.82	83.41	54.2
Merged-chr2-132846661-3	chr2	132846564	132846764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-2.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	49.26	74.7	49.06	59.12	53.18	74.32	40.19	50.64	62.74	64.27	53.26	41.98
Merged-chr9-77917268-3	chr9	77917175	77917375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-90.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	227.74	190.91	206.51	199.89	256.92	290.37	224.88	230.75	275.36	273.65	312.54	149.43
Merged-chr12-84766442-3	chr12	84766291	84766491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 1 of 3)	RMER13A1|LTR|ERVK	6721.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	16.56	17.36	16.54	17.29	28.23	21.32	12.29	19.99	15.74	13.56	31.66	18.48
Merged-chr17-34331462-2	chr17	34331358	34331558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033978, intron 1 of 4)	intron (NM_001033978, intron 1 of 4)	5783.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	8.88	19.87	15.4	3.22	2.86	10.03	3.99	0.64	15.14	10.54	17.08	1.25
Merged-chr5-9069060-3	chr5	9068972	9069172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31665.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	24.63	22.89	37.65	41.02	59.73	33.87	43.51	57.14	33.44	29.12	33.16	27.25
Merged-chr13-110960440-3	chr13	110960345	110960545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56599.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	35.13	27.92	51.91	54.3	49.5	47.04	44.84	67.18	60.38	58.75	55.78	34.77
Merged-chr19-29488619-3	chr19	29488515	29488715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33372.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	55.72	45.53	57.62	40.22	76.5	68.99	53.48	63.7	87.53	76.82	86.43	48.56
Merged-chr12-35026147-3	chr12	35026049	35026249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21040.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	37.15	20.37	33.09	47.06	39.27	45.15	34.21	59.58	50.16	27.11	46.23	21.93
Merged-chr2-62460541-3	chr2	62460456	62460656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Plat_L3|LINE|CR1	23097.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	53.7	36.47	45.64	53.09	38.46	58.32	45.84	52.4	77.1	53.73	70.35	52.94
Merged-chrM-2614-2	chrM	2529	2729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											51415.7	45376.4	55023.97	56115.71	48371.58	59599.22	53113.47	75405.97	0.0	0.0	0.0	0.0
Merged-chr11-96977820-3	chr11	96977731	96977931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-143.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	214.82	236.44	210.5	214.37	279.01	322.04	180.7	192.98	244.88	302.77	249.73	158.83
Merged-chr9-105495169-3	chr9	105495085	105495285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-52.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	104.99	87.03	97.55	92.1	106.78	117.59	70.09	100.37	209.87	187.79	289.43	115.6
Merged-chr9-83925075-3	chr9	83924918	83925118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-119.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	79.95	60.37	45.64	84.86	86.73	69.61	72.75	98.36	92.05	95.9	134.67	35.4
Merged-chr7-19083958-3	chr7	19083862	19084062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126095, exon 1 of 15)	non-coding (NR_126095, exon 1 of 15)	113.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	14.13	15.09	19.4	14.08	15.14	14.42	17.94	11.86	44.45	24.6	47.23	20.99
Merged-chr11-77372524-3	chr11	77372455	77372655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	24275.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	10.5	10.82	10.27	14.48	12.27	11.6	9.63	21.62	21.44	21.09	21.1	19.74
Merged-chr10-21077273-3	chr10	21077193	21077393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177776, intron 6 of 6)	intron (NM_001177776, intron 6 of 6)	36473.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	31.5	39.49	31.95	31.37	16.77	19.76	15.94	24.06	27.54	25.61	34.17	20.05
Merged-chr1-191334657-3	chr1	191334567	191334767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	8702.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	98.93	106.9	102.11	103.37	113.32	128.25	81.38	121.82	137.48	124.52	138.69	88.97
Merged-chr18-83984182-3	chr18	83984078	83984278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	102384.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	29.88	32.45	51.34	17.29	27.41	25.4	21.59	27.64	55.66	36.15	74.87	45.74
Merged-chr3-95673880-3	chr3	95673732	95673932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14085.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	58.15	63.64	77.58	102.96	92.87	90.94	71.08	74.66	65.69	77.32	95.97	58.58
Merged-chr9-21424821-3	chr9	21424723	21424923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253893)	promoter-TSS (NM_001253893)	-85.0	NM_007871	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	152.63	147.9	191.67	155.65	214.78	253.05	141.84	181.49	203.38	267.12	233.65	151.93
Merged-chr16-11134709-3	chr16	11134592	11134792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-160.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	305.67	310.64	294.36	303.66	298.24	365.63	266.73	270.28	359.94	367.04	452.74	240.9
Merged-chr9-96719920-3	chr9	96719820	96720020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359960)	promoter-TSS (NM_001359960)	-70.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	46.84	30.43	27.95	37.4	36.0	42.96	37.87	34.35	48.78	51.72	72.36	37.59
Merged-chrX-102008144-3	chrX	102008039	102008239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	L2c|LINE|L2	63168.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	34.32	17.1	31.38	36.2	19.23	22.26	22.92	25.51	22.03	21.59	19.09	14.1
Merged-chr2-79036491-3	chr2	79036404	79036604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166826.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	40.78	24.15	29.66	43.84	60.14	42.96	36.87	70.71	55.07	59.75	69.34	36.03
Merged-chr6-97429926-3	chr6	97429812	97430012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	MTD|LTR|ERVL-MaLR	29374.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	22.21	25.66	32.52	21.32	40.5	29.79	33.55	43.4	27.14	34.14	46.73	45.11
Merged-chr16-11203358-3	chr16	11203239	11203439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038156)	promoter-TSS (NR_038156)	-44.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	92.07	74.96	88.42	75.21	67.5	114.14	50.49	89.61	103.26	120.0	112.05	85.21
Merged-chr11-89076409-3	chr11	89076310	89076510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 2 of 3)	Lx9|LINE|L1	2569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	52.09	48.04	35.94	72.8	42.14	41.39	23.92	50.3	41.11	47.7	68.34	41.98
Merged-chr6-29794769-3	chr6	29794691	29794891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	26348.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	78.74	92.31	79.86	106.99	100.64	117.59	62.45	98.3	81.63	78.83	81.4	41.66
Merged-chr11-86757781-5	chr11	86757671	86757871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-204.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	81.57	72.94	57.05	53.89	94.09	108.5	43.18	49.77	111.92	151.64	97.48	79.88
Merged-chr8-57592850-3	chr8	57592748	57592948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	B3A|SINE|B2	-58905.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	33.11	25.91	38.22	26.95	42.14	40.45	35.87	56.07	55.07	39.16	76.88	38.22
Merged-chr9-63602583-3	chr9	63602502	63602702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	-44.0	NM_025857	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	129.21	84.76	91.27	94.11	173.46	190.34	57.47	156.25	153.02	148.12	149.74	94.29
Merged-chr7-141550566-3	chr7	141550456	141550656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10699.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	39.17	28.67	29.09	13.67	32.32	48.6	44.84	27.36	30.29	28.62	34.67	13.16
Merged-chrX-136742106-2	chrX	136741998	136742198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019768)	promoter-TSS (NM_019768)	-489.0	NM_019768	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	24.23	12.58	38.79	23.33	29.05	30.73	23.25	28.01	51.93	50.71	74.87	23.49
Merged-chr4-53227927-3	chr4	53227794	53227994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18302.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	87.62	94.57	115.23	108.19	136.23	145.5	105.3	118.68	133.16	141.59	163.81	102.75
Merged-chr8-104247222-3	chr8	104247111	104247311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	1347.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	117.91	119.48	164.86	142.78	131.32	142.68	138.52	189.67	144.57	89.88	206.02	86.46
Merged-chr2-143991488-3	chr2	143991381	143991581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	19782.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	25.44	18.36	34.8	24.94	36.0	24.15	12.95	25.54	28.91	22.59	35.17	22.24
Merged-chr8-75086248-3	chr8	75086138	75086338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	89.64	94.32	122.08	110.2	129.28	196.92	157.12	141.17	126.08	149.13	141.7	60.77
Merged-chr4-127243753-3	chr4	127243636	127243836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-48.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	78.34	73.19	66.74	67.57	69.96	87.8	42.19	69.0	112.11	83.35	129.64	73.93
Merged-chr12-84175865-3	chr12	84175767	84175967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18148.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	118.31	99.86	111.24	94.11	92.46	127.94	63.78	100.26	115.46	119.5	135.17	67.35
Merged-chr10-128805485-3	chr10	128805370	128805570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359824)	promoter-TSS (NM_001359824)	-84.0	NM_001359825	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	165.15	171.54	163.72	193.86	209.05	217.62	156.45	181.04	195.7	224.94	248.73	139.09
Merged-chr4-20042068-3	chr4	20041974	20042174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	22.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	39.57	42.51	29.09	47.46	86.32	61.15	68.1	65.44	74.54	46.7	132.15	40.41
Merged-chr7-80830612-3	chr7	80830520	80830720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27289.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	208.76	181.1	189.39	223.22	225.83	300.72	209.93	213.48	262.19	250.05	293.45	157.57
Merged-chr18-46598366-3	chr18	46598246	46598446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025698)	promoter-TSS (NM_025698)	642.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	24.63	17.61	21.68	15.28	17.18	14.74	21.59	12.87	24.98	27.11	15.58	26.0
Merged-chr8-120743759-3	chr8	120743661	120743861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008320, exon 3 of 9)	exon (NM_008320, exon 3 of 9)	5122.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	64.2	61.12	95.27	84.86	66.68	50.8	89.69	94.37	62.35	40.67	73.36	57.33
Merged-chr11-116130179-3	chr11	116130080	116130280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	948.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	30.28	22.89	35.94	31.37	48.27	51.43	30.23	44.47	56.25	50.21	43.72	37.91
Merged-chr10-84549975-3	chr10	84549876	84550076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040658, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	3362.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	35.94	40.75	43.93	24.53	39.27	38.57	24.91	18.81	39.53	32.13	51.25	29.45
Merged-chr8-39403961-2	chr8	39403861	39404061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	105981.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	19.79	29.68	27.38	55.1	22.91	27.91	37.54	54.59	1.97	1.51	1.0	0.31
Merged-chr16-38376997-3	chr16	38376901	38377101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081984, intron 3 of 3)	MTC|LTR|ERVL-MaLR	14811.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	36.34	21.63	34.23	38.61	33.96	48.6	55.8	50.22	56.25	38.66	79.89	25.69
Merged-chr4-136148059-1	chr4	136147959	136148159	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	4237.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	67.84	82.25	51.34	79.64	91.64	83.41	77.06	100.77	90.48	77.83	69.85	52.63
Merged-chr4-40142914-3	chr4	40142773	40142973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-392.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	154.25	170.54	197.95	221.21	201.28	215.11	137.52	242.72	222.26	235.99	262.8	147.55
Merged-chr4-135920679-3	chr4	135920576	135920776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024243)	promoter-TSS (NM_024243)	-50.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	34.32	27.17	23.39	28.56	47.46	23.52	20.59	27.53	44.25	36.15	51.25	34.77
Merged-chr4-119000184-3	chr4	119000069	119000269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38202.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	71.47	62.88	74.73	22.52	54.41	73.38	27.9	27.5	99.72	123.52	78.89	33.83
Merged-chr11-89021064-3	chr11	89020973	89021173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009546)	TTS (NM_009546)	21670.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	121.95	98.85	170.57	179.38	198.82	189.08	162.1	163.29	234.45	253.06	285.41	145.36
Merged-chr10-77266424-3	chr10	77266330	77266530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030262, intron 6 of 8)	intron (NM_030262, intron 6 of 8)	7130.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	208.36	188.14	198.52	212.76	236.05	281.9	184.69	222.45	248.61	217.41	364.8	154.44
Merged-chr16-76366068-3	chr16	76365988	76366188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6961.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	69.05	58.86	49.06	61.54	33.96	30.42	33.22	47.3	35.4	35.65	49.24	17.23
Merged-chr1-193844636-3	chr1	193844525	193844725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-337095.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	44.42	34.96	54.19	73.2	64.23	42.33	52.82	90.65	77.5	42.68	62.81	31.64
Merged-chr13-94976385-3	chr13	94976295	94976495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172590)	promoter-TSS (NM_172590)	51.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	67.84	76.21	70.17	63.95	87.55	110.06	59.79	67.57	90.08	59.25	82.91	54.51
Merged-chr6-56832124-3	chr6	56832047	56832247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012056)	promoter-TSS (NM_012056)	88.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	16.96	28.67	11.98	16.49	31.5	33.24	34.21	40.54	26.36	25.61	34.67	16.92
Merged-chrX-169980614-1	chrX	169980514	169980714	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 4 of 9)	intron (NM_010797, intron 4 of 9)	-1697.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	56.45	37.66	41.71	10.65
Merged-chr6-48579490-3	chr6	48579341	48579541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-6639.0	NM_001347167	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	19.38	28.42	28.52	22.52	45.41	34.18	39.86	46.07	23.6	29.12	32.16	15.98
Merged-chr11-70688049-3	chr11	70687980	70688180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	25.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	60.57	31.19	69.6	48.26	57.27	47.98	59.46	67.6	60.19	51.72	101.0	43.86
Merged-chr5-124037089-3	chr5	124036999	124037199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4839.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	21.8	22.39	31.38	28.56	24.14	18.19	21.92	25.82	52.52	23.6	38.19	26.94
Merged-chrY-90799335-1	chrY	90799235	90799435	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	13893.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.0	0.5	0.0	0.0	6.55	6.27	4.65	1.65	21.05	28.12	23.62	10.65
Merged-chr9-44231131-3	chr9	44231031	44231231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	2915.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	31.09	38.99	29.09	9.25	31.09	47.35	15.28	17.44	39.93	48.2	30.65	22.24
Merged-chr10-77418348-3	chr10	77418252	77418452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	-24.0	NR_027377	100045653.0	Mm.363175	NR_027377		Gm17769	-	predicted gene, 17769	ncRNA	124.37	129.79	130.63	143.99	147.28	241.76	113.27	181.04	165.22	170.21	229.63	111.84
Merged-chr3-51483982-3	chr3	51483870	51484070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	4.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	78.34	70.68	109.53	85.67	126.41	122.29	88.03	122.02	125.09	122.01	179.39	80.51
Merged-chr7-46985888-3	chr7	46985775	46985975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033461, intron 3 of 4)	intron (NR_033461, intron 3 of 4)	9243.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	31.9	22.64	43.93	17.7	23.32	28.54	19.27	24.39	29.9	25.61	49.75	19.74
Merged-chr18-23803877-3	chr18	23803783	23803983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153058)	promoter-TSS (NM_153058)	-87.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	288.71	301.83	282.95	321.76	288.42	332.39	326.52	316.91	302.9	338.42	396.46	195.48
Merged-chr6-140624443-6	chr6	140624341	140624541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-468.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	8.48	8.55	9.13	8.45	18.82	28.85	9.97	7.57	21.24	21.59	15.07	10.96
Merged-chr17-37524768-3	chr17	37524668	37524868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5189.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	25.84	26.16	48.49	60.73	38.46	35.75	39.53	35.69	41.3	41.67	50.75	32.89
Merged-chr9-57440100-3	chr9	57439994	57440194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	20.0	NM_176831	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	87.62	62.63	103.25	63.15	96.55	109.44	54.81	66.17	82.41	75.32	92.46	59.83
Merged-chr13-28953835-3	chr13	28953741	28953941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-142.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	44.01	33.7	57.62	60.33	58.09	61.15	33.22	70.32	25.96	30.13	22.61	5.33
Merged-chr17-17871857-3	chr17	17871781	17871981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12058.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	79.55	76.46	74.73	77.22	73.64	104.42	69.42	84.11	106.01	114.98	135.67	55.76
Merged-chr19-56548557-3	chr19	56548433	56548633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018831)	promoter-TSS (NM_018831)	272.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	74.7	71.43	103.82	78.83	69.14	80.27	68.76	70.91	79.46	63.27	106.02	46.05
Merged-chr10-119028810-3	chr10	119028704	119028904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152787, exon 4 of 4)	non-coding (NR_152787, exon 4 of 4)	21695.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	16.15	24.65	19.97	24.94	30.27	58.01	33.55	26.13	67.27	68.79	61.3	40.41
Merged-chr12-110932504-3	chr12	110932408	110932608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175336, intron 9 of 20)	B1F|SINE|Alu	43244.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	39.98	33.7	50.77	48.26	18.0	22.58	27.57	36.84	27.14	22.09	36.18	25.06
Merged-chr1-180387636-3	chr1	180387538	180387738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-57089.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	194.63	161.73	231.03	152.84	207.01	257.76	153.8	172.96	202.39	230.97	285.91	143.16
Merged-chr8-120108047-3	chr8	120107954	120108154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-6098.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	25.04	25.15	39.36	47.46	38.46	42.65	32.88	51.93	36.78	22.09	72.36	25.69
Merged-chr13-100744629-3	chr13	100744537	100744737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190264)	promoter-TSS (NM_001190264)	22.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	47.24	46.53	55.33	41.43	58.09	71.49	35.87	54.56	55.27	47.2	81.9	40.72
Merged-chr15-38299281-3	chr15	38299180	38299380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013692, intron 1 of 3)	CpG	620.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	193.01	200.72	195.67	171.34	269.6	322.98	225.54	216.98	300.15	382.6	376.36	160.39
Merged-chr7-137410647-3	chr7	137410530	137410730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029886, intron 1 of 3)	CpG	126.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	136.89	182.86	152.31	196.27	127.23	210.09	249.79	178.68	144.76	155.65	171.35	124.05
Merged-chr10-61146351-3	chr10	61146253	61146453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316674, intron 1 of 14)	CpG	1331.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	58.55	84.76	72.45	76.02	62.18	62.4	68.76	66.22	76.12	70.8	68.34	52.0
Merged-chr11-51539803-3	chr11	51539692	51539892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 5 of 28)	intron (NM_153393, intron 5 of 28)	-44965.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	35.13	35.72	22.82	39.82	47.87	54.88	16.94	38.38	36.78	63.27	70.35	24.12
Merged-chr17-29009369-3	chr17	29009256	29009456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1361.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	44.82	41.5	33.66	49.47	62.59	83.72	41.19	59.44	83.0	59.75	70.35	42.29
Merged-chr8-126758097-3	chr8	126758015	126758215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90905.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	54.51	41.25	73.02	61.13	87.55	65.54	75.73	100.65	52.12	54.23	74.87	44.8
Merged-chr10-10660153-3	chr10	10660055	10660255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54210.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	24.63	29.18	35.94	40.62	24.96	28.22	19.93	37.51	34.42	26.11	58.29	26.0
Merged-chr1-5019378-3	chr1	5019270	5019470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	169.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	19.38	16.1	17.68	19.71	33.14	27.91	25.58	51.2	35.01	30.63	53.26	23.81
Merged-chr16-87479207-1	chr16	87479107	87479307	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024258, exon 14 of 18)	exon (NM_024258, exon 14 of 18)	16662.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	1.62	1.01	5.13	5.63	7.36	2.2	10.3	11.13	2.95	7.03	9.55	5.33
Merged-chr4-122924022-3	chr4	122923911	122924111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37177.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	29.48	22.64	38.79	43.04	40.5	33.55	23.25	28.79	38.94	24.1	48.74	19.42
Merged-chr15-51689707-3	chr15	51689596	51689796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	175765.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	30.69	36.97	68.45	64.35	39.68	31.04	35.21	55.74	39.73	42.18	58.79	22.87
Merged-chr9-94993678-1	chr9	94993578	94993778	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 9 of 15)	intron (NM_177909, intron 9 of 15)	241849.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	1.62	1.51	0.0	5.63	4.5	2.51	7.64	16.51	0.59	1.51	5.53	3.45
Merged-chr1-178406434-3	chr1	178406300	178406500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026626, intron 1 of 6)	CpG	382.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	123.56	117.72	120.37	142.78	110.87	108.18	90.68	116.83	115.85	124.52	182.9	88.03
Merged-chr12-72761085-3	chr12	72760979	72761179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-132.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	120.73	108.66	133.49	95.72	137.87	148.95	109.62	125.69	218.32	185.28	241.69	121.23
Merged-chr4-134914969-3	chr4	134914848	134915048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-32.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	27.05	30.94	30.23	26.55	25.77	23.83	24.25	21.95	30.88	25.61	35.68	26.94
Merged-chr2-166045194-3	chr2	166045112	166045312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	52575.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	44.82	32.7	42.21	31.37	48.68	74.94	42.85	60.39	46.62	45.69	53.77	43.86
Merged-chr8-33731869-3	chr8	33731751	33731951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167921)	promoter-TSS (NM_001167921)	-63.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	151.42	180.85	177.98	213.57	181.23	217.93	174.06	212.33	205.93	232.47	312.54	121.55
Merged-chr17-26676455-3	chr17	26676407	26676607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025272, exon 1 of 4)	exon (NM_025272, exon 1 of 4)	111.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	27.86	24.15	18.25	22.52	24.96	36.06	32.88	20.44	35.99	29.62	30.65	27.88
Merged-chr4-118999822-3	chr4	118999715	118999915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37848.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	80.76	51.81	58.19	66.77	56.05	91.25	34.55	58.43	124.11	78.33	127.13	68.61
Merged-chr14-73334050-3	chr14	73333946	73334146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-E-int|LTR|ERVL	-8224.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	37.15	38.23	58.19	48.26	31.5	31.98	21.26	43.4	33.83	51.21	36.18	39.47
Merged-chr13-59770358-3	chr13	59770244	59770444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026921)	promoter-TSS (NM_026921)	378.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	39.17	32.2	29.66	20.11	25.77	35.75	22.59	22.15	46.22	40.67	50.25	27.57
Merged-chrUn_JH584304-8786-1	chrUn_JH584304	8686	8886	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	50903.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.57	16.07	17.59	14.1
Merged-chr15-88491119-3	chr15	88491009	88491209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-109193.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	20.19	21.63	37.65	32.58	34.36	20.07	22.59	47.66	47.01	28.62	51.25	36.34
Merged-chr14-54894448-2	chr14	54894354	54894554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019402, exon 1 of 7)	exon (NM_019402, exon 1 of 7)	311.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	25.44	24.4	35.94	18.5	19.64	20.38	20.93	17.27	24.39	32.64	20.1	17.86
Merged-chr5-122614457-3	chr5	122614351	122614551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358917)	promoter-TSS (NM_001358917)	93.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	48.46	38.48	37.08	30.57	41.32	47.04	28.23	31.15	48.19	46.7	23.62	18.8
Merged-chr7-115131459-3	chr7	115131347	115131547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180173.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	47.24	22.39	35.94	33.38	39.27	33.24	40.19	47.5	38.35	28.12	48.24	29.76
Merged-chr4-139169506-3	chr4	139169395	139169595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11160.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	77.53	51.31	83.86	82.85	36.41	34.49	47.17	38.33	74.94	94.4	80.4	61.09
Merged-chr19-41341829-3	chr19	41341718	41341918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	43252.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	68.65	56.85	96.41	76.02	77.32	94.7	66.43	86.78	60.19	59.75	74.37	38.85
Merged-chr7-49078900-1	chr7	49078800	49079000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	83258.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	1.01	0.0	4.02	5.32	3.76	13.62	12.95	4.72	1.0	3.01	3.76
Merged-chr17-62576122-3	chr17	62576030	62576230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	305187.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	41.59	47.04	87.28	67.97	66.68	67.1	77.06	113.83	87.92	70.8	123.61	79.26
Merged-chr7-66392717-3	chr7	66392637	66392837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053080, exon 13 of 13)	exon (NM_053080, exon 13 of 13)	-4396.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	76.72	86.53	90.7	96.13	64.64	77.77	69.09	77.52	71.0	63.27	71.86	48.56
Merged-chr10-19078282-3	chr10	19078180	19078380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62870.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	83.59	84.51	53.05	20.51	94.09	93.13	59.13	40.43	67.86	71.3	68.34	24.75
Merged-chr19-55683937-3	chr19	55683846	55684046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	MTD|LTR|ERVL-MaLR	18258.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	37.15	31.94	43.35	33.78	41.32	51.43	45.18	40.65	51.14	44.69	57.28	41.04
Merged-chr9-41160688-1	chr9	41160588	41160788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2626.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	13.33	20.88	19.4	13.67	14.73	16.31	12.95	16.65	15.14	23.6	25.63	13.78
Merged-chr1-153415164-3	chr1	153415075	153415275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-942.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	69.86	53.07	20.54	45.45	31.09	86.86	18.6	49.96	76.12	70.29	49.24	48.56
Merged-chr6-71963836-3	chr6	71963751	71963951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009088, intron 22 of 33)	intron (NM_009088, intron 22 of 33)	54798.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	81.16	66.15	86.71	35.39	63.41	100.03	48.16	37.18	81.23	84.35	92.46	41.35
Merged-chr4-59455683-3	chr4	59455571	59455771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17038.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	80.36	60.37	69.6	68.37	72.0	77.14	101.31	106.12	47.8	55.23	57.28	36.34
Merged-chr12-77238875-3	chr12	77238745	77238945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045554, exon 1 of 12)	non-coding (NR_045554, exon 1 of 12)	106.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	41.59	49.55	44.5	56.71	69.55	61.46	52.15	77.64	61.37	58.75	89.94	50.44
Merged-chr16-36636944-3	chr16	36636847	36637047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	MTD|LTR|ERVL-MaLR	29130.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	48.05	43.01	40.5	56.71	75.28	66.48	45.84	62.13	58.61	74.81	94.47	46.36
Merged-chr17-70852874-4	chr17	70852774	70852974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	CpG	658.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	123.97	155.7	98.69	57.51	106.37	200.06	117.92	76.77	203.57	242.52	188.43	72.05
Merged-chr18-50087932-3	chr18	50087828	50088028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-34266.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	37.55	15.34	34.8	51.08	28.23	37.32	37.54	63.17	42.68	33.64	81.9	20.05
Merged-chr12-76552542-3	chr12	76552444	76552644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-4619.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	73.89	53.32	100.4	70.38	66.68	75.57	70.75	104.02	96.18	84.86	122.1	68.29
Merged-chr15-81399698-3	chr15	81399616	81399816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-22.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	49.67	53.58	53.05	56.31	74.87	85.61	41.19	49.29	84.18	86.86	95.47	40.72
Merged-chr10-121365047-3	chr10	121364957	121365157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-33.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	101.35	72.69	73.02	77.22	121.5	134.21	74.07	117.31	190.79	191.8	221.59	108.7
Merged-chr11-64627630-1	chr11	64627530	64627730	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-190956.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	9.69	4.28	5.7	3.62	7.36	20.07	11.96	3.9	3.74	1.0	0.5	2.82
Merged-chr18-53245555-3	chr18	53245468	53245668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-94.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	60.97	63.64	89.56	55.1	70.77	70.55	71.08	99.2	105.42	73.81	146.22	62.65
Merged-chr9-21724348-3	chr9	21724296	21724496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	820.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	54.92	40.24	37.08	32.18	40.91	51.74	44.51	44.44	61.56	39.67	51.25	41.66
Merged-chr2-59240198-3	chr2	59240116	59240316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79366.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	142.94	106.14	211.07	212.36	148.5	145.81	169.41	243.11	193.74	139.59	218.58	145.67
Merged-chr9-64253688-3	chr9	64253529	64253729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008927)	promoter-TSS (NM_008927)	-24.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	80.76	67.66	78.72	94.92	100.23	130.76	63.78	79.26	134.34	122.51	131.65	80.51
Merged-chr9-89224797-3	chr9	89224678	89224878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	13394.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	87.22	80.74	91.84	121.06	127.23	140.17	83.04	78.79	116.64	84.35	124.11	72.99
Merged-chr3-94595941-3	chr3	94595859	94596059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44A|LTR|ERVK	-13243.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	24.23	32.95	31.38	20.11	54.0	75.88	38.2	25.65	38.35	25.61	31.66	16.6
Merged-chrX-93689462-3	chrX	93689368	93689568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_211138, intron 1 of 7)	intron (NM_211138, intron 1 of 7)	14356.0	NM_211138	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	37.55	45.28	61.04	69.18	51.96	46.41	53.81	77.13	55.07	53.73	57.28	48.87
Merged-chr12-86836866-3	chr12	86836769	86836969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47945.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	27.86	43.77	33.66	39.82	49.5	43.59	20.59	37.35	54.48	53.22	56.28	23.49
Merged-chr19-41263453-3	chr19	41263364	41263564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133352, intron 1 of 14)	CpG	540.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	34.73	48.04	27.38	26.14	42.96	42.96	47.17	29.58	46.62	65.27	58.79	31.33
Merged-chr6-113046227-3	chr6	113046132	113046332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-70.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	149.0	136.33	148.89	152.03	181.64	222.32	139.18	147.79	212.62	191.3	193.96	131.57
Merged-chr1-166138353-3	chr1	166138261	166138461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8140.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	60.57	46.28	41.64	36.6	79.37	93.13	67.1	103.79	71.99	86.36	102.51	46.68
Merged-chr19-44314566-3	chr19	44314461	44314661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11390.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	110.64	108.41	128.35	130.71	110.87	189.4	153.46	173.3	208.29	166.2	297.47	116.22
Merged-chr14-18234998-3	chr14	18234885	18235085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4121.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	19.79	12.07	31.95	18.5	6.14	25.4	17.27	31.49	29.5	37.16	28.64	23.49
Merged-chr1-40295038-3	chr1	40294937	40295137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123382, intron 5 of 10)	intron (NM_001123382, intron 5 of 10)	28451.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	69.45	65.65	78.15	98.14	92.46	91.56	70.09	100.82	117.82	138.58	127.63	63.28
Merged-chr6-53708075-3	chr6	53707955	53708155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112770.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	19.38	18.11	18.83	17.7	22.09	41.71	20.93	17.47	22.23	36.15	43.72	18.48
Merged-chr4-155568285-3	chr4	155568195	155568395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	4480.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	41.99	33.2	19.97	30.57	39.27	28.85	30.23	34.01	47.01	70.29	55.78	29.45
Merged-chr1-166002815-3	chr1	166002701	166002901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-167.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	199.07	171.04	176.27	134.33	199.64	245.53	191.66	191.3	348.73	345.95	409.02	180.75
Merged-chr3-107895823-3	chr3	107895713	107895913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010360)	promoter-TSS (NM_010360)	-41.0	NM_010360	14866.0	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	18.17	14.84	17.68	17.7	33.96	36.37	32.88	34.65	29.5	29.12	50.25	26.0
Merged-chr7-89404304-3	chr7	89404203	89404403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	-63.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	123.97	101.62	124.93	156.05	148.5	142.68	141.5	183.08	155.19	145.11	216.57	108.39
Merged-chr4-134095145-3	chr4	134095063	134095263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013706)	promoter-TSS (NM_013706)	-90.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	21.0	31.19	37.08	22.93	25.36	28.54	14.28	16.21	58.02	48.7	55.78	34.15
Merged-chr19-21066645-3	chr19	21066582	21066782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38028.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	48.46	41.25	40.5	37.81	57.27	42.33	39.53	56.55	47.21	42.68	69.34	26.63
Merged-chr13-30582740-3	chr13	30582631	30582831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32312.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	33.92	24.15	30.23	42.23	67.91	36.06	31.89	55.79	26.36	24.1	53.77	28.82
Merged-chr5-41768561-3	chr5	41768413	41768613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4293.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	17.77	16.1	14.83	18.5	16.36	16.62	14.62	19.54	19.28	27.62	22.11	7.83
Merged-chr11-97830103-3	chr11	97830004	97830204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10676.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	55.72	51.81	70.74	50.27	65.05	75.88	61.12	58.35	80.25	66.78	80.4	38.53
Merged-chr2-27350511-3	chr2	27350399	27350599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	RMER1C|Other|Other	77109.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	109.02	88.03	109.53	93.71	91.23	121.04	59.46	98.5	107.2	90.38	117.08	65.47
Merged-chr2-117304129-3	chr2	117304026	117304226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38751.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	28.67	33.96	39.93	24.53	34.36	39.2	24.91	21.53	69.23	54.23	63.31	39.47
Merged-chr5-100674163-3	chr5	100673955	100674155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027978, exon 1 of 7)	exon (NM_027978, exon 1 of 7)	201.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	11.71	27.67	19.4	28.15	15.55	34.18	29.9	8.21	22.03	16.57	26.63	15.04
Merged-chr4-4792833-2	chr4	4792727	4792927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177730, exon 1 of 5)	exon (NM_177730, exon 1 of 5)	479.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	12.92	9.06	12.55	16.09	13.91	12.86	14.95	17.72	13.18	11.05	27.13	10.96
Merged-chr8-111094564-3	chr8	111094468	111094668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198308)	promoter-TSS (NM_198308)	-177.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	68.65	56.59	54.19	45.85	54.0	70.87	41.52	35.55	78.28	75.32	96.98	49.81
Merged-chr11-5512523-3	chr11	5512375	5512575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31B|LTR|ERV1	-8166.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	28.67	15.85	34.23	16.89	27.41	32.61	21.59	32.94	22.03	24.1	16.58	22.56
Merged-chr1-171388995-3	chr1	171388890	171389090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	30.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	117.91	134.82	143.76	143.59	165.69	196.92	134.2	153.25	169.74	183.77	240.19	112.46
Merged-chr19-42090291-3	chr19	42090170	42090370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-165.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	265.7	271.65	272.11	248.56	271.24	310.44	223.55	240.23	270.64	355.99	406.51	203.0
Merged-chr2-94438237-3	chr2	94438140	94438340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-54.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	96.1	136.58	130.63	127.1	119.87	126.68	103.31	152.02	139.26	140.59	163.31	112.78
Merged-chr18-54846628-3	chr18	54846522	54846722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143558.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	45.23	29.68	63.32	42.23	44.59	53.31	41.19	54.67	59.01	59.25	74.87	35.71
Merged-chr8-46211075-3	chr8	46210974	46211174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-12.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	32.3	33.7	25.1	33.78	36.82	36.37	28.57	32.61	50.16	44.69	45.73	22.87
Merged-chr17-46680987-3	chr17	46680888	46681088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027910)	promoter-TSS (NM_027910)	2.0	NM_001277309	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	155.06	128.78	136.34	162.49	185.32	207.59	151.8	145.85	214.98	194.82	225.61	104.0
Merged-chr6-136654296-1	chr6	136654196	136654396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7597.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	19.79	8.8	17.68	18.9	16.77	12.86	15.94	8.89	26.36	21.09	34.67	28.51
Merged-chr1-165691679-3	chr1	165691581	165691781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	16413.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	31.9	28.17	33.66	34.99	59.73	85.29	48.5	61.74	81.23	42.68	80.4	29.45
Merged-chr16-58476555-3	chr16	58476474	58476674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	46852.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	49.67	35.72	62.18	37.4	81.82	70.24	79.39	68.83	83.2	89.37	84.92	49.81
Merged-chr1-37997292-3	chr1	37997169	37997369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	-61.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	149.0	116.71	128.35	123.48	162.41	202.25	96.0	125.44	204.75	212.89	226.12	126.25
Merged-chr19-10188785-3	chr19	10188675	10188875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146094, intron 5 of 11)	intron (NM_146094, intron 5 of 11)	-2600.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	28.67	28.67	41.07	39.01	38.46	25.71	23.92	37.85	19.08	10.04	40.2	18.17
Merged-chr13-81108644-3	chr13	81108575	81108775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	144601.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	27.86	24.15	19.97	32.18	34.77	32.93	34.88	50.61	25.96	36.65	44.72	29.45
Merged-chr8-68062465-3	chr8	68062376	68062576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-87902.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	29.07	30.69	16.54	42.23	27.0	22.89	21.92	35.19	26.36	24.1	59.8	25.69
Merged-chr7-120150393-3	chr7	120150289	120150489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5098.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	92.07	81.75	116.37	147.21	98.18	128.56	103.64	162.42	132.37	125.02	161.3	93.04
Merged-chr7-105628807-3	chr7	105628704	105628904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	4767.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	52.49	57.35	66.17	50.27	66.68	71.18	39.2	51.7	71.2	57.74	93.46	47.3
Merged-chr13-62383185-3	chr13	62383079	62383279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	-5.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	24.63	36.47	34.23	43.84	27.0	24.15	29.23	27.48	32.45	45.69	66.83	37.28
Merged-chr2-71367754-3	chr2	71367627	71367827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-173.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	46.03	84.51	43.35	58.72	73.64	76.51	97.66	64.32	67.27	79.83	89.44	60.15
Merged-chr2-90504200-3	chr2	90504095	90504295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25021.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	17.36	14.59	26.24	15.69	44.18	31.04	23.92	31.09	44.84	24.1	36.18	16.6
Merged-chr4-119539572-3	chr4	119539459	119539659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-102.0	NM_001290696	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	100.55	95.58	65.6	57.92	58.09	80.9	48.5	55.32	112.51	109.96	113.56	72.05
Merged-chr6-99785411-3	chr6	99785298	99785498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59006.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	34.32	23.14	34.8	29.36	25.36	30.42	30.23	31.71	29.5	23.1	30.65	13.47
Merged-chr9-96376046-3	chr9	96375945	96376145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11614.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	16.15	17.1	23.96	24.53	27.82	30.73	24.58	20.61	62.55	51.21	46.73	45.11
Merged-chr16-48994096-3	chr16	48993975	48994175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	37.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	46.84	44.52	31.95	58.32	67.09	61.15	76.07	64.21	64.91	67.28	81.9	34.46
Merged-chr18-52465654-3	chr18	52465564	52465764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-29.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	203.11	193.68	158.02	176.16	175.91	256.82	160.11	182.83	263.17	245.53	256.77	118.73
Merged-chr6-145249509-3	chr6	145249395	145249595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 1 of 4)	CpG	736.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	18.17	30.43	24.53	25.74	22.09	33.24	26.57	31.37	40.32	49.71	60.3	40.41
Merged-chr11-100320484-3	chr11	100320387	100320587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011508, intron 1 of 3)	CpG	538.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	160.71	146.64	172.28	138.76	148.5	210.09	132.2	143.3	189.41	222.43	230.14	143.79
Merged-chr16-16358903-3	chr16	16358731	16358931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276341)	promoter-TSS (NM_001276341)	200.0	NM_152816	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	28.67	33.45	30.23	38.61	32.32	24.46	46.17	32.27	40.12	35.15	45.22	32.27
Merged-chrUn_JH584304-13975-1	chrUn_JH584304	13875	14075	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	45714.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	24.78	30.13	32.66	21.62
Merged-chr10-98881698-3	chr10	98881602	98881802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-32940.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	79.95	47.54	63.89	61.94	106.78	89.68	63.44	100.46	78.28	74.31	73.36	58.89
Merged-chr2-29624928-3	chr2	29624844	29625044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	5224.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	28.67	30.69	30.23	22.52	46.64	58.32	30.23	27.48	38.16	58.24	62.81	24.12
Merged-chr5-54013441-3	chr5	54013360	54013560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	14937.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	44.42	43.01	46.21	28.15	33.96	55.5	23.92	52.82	73.95	73.81	56.28	30.07
Merged-chr19-30033322-3	chr19	30033223	30033423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	2810.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	29.88	18.86	29.66	28.56	31.91	32.3	29.23	51.93	34.03	32.64	43.21	20.05
Merged-chr3-103857535-2	chr3	103857453	103857653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2242.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	14.54	18.61	35.94	24.94	2.45	1.57	3.99	2.72	51.34	33.14	66.33	27.25
Merged-chr11-45945013-3	chr11	45944919	45945119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-84.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	129.62	137.08	138.05	143.99	131.32	176.23	119.58	135.11	192.95	177.24	227.62	105.26
Merged-chr17-88341799-3	chr17	88341701	88341901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98903.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	108.22	104.38	107.82	90.49	94.5	92.82	88.03	108.39	129.03	121.01	128.13	71.42
Merged-chr11-17003035-3	chr11	17002910	17003110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5708.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	110.64	85.77	152.88	117.84	83.87	136.09	92.34	120.22	138.67	99.92	181.4	60.46
Merged-chr9-21022023-3	chr9	21021913	21022113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010493, intron 2 of 6)	intron (NM_010493, intron 2 of 6)	6073.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	5.25	27.17	13.69	5.63	20.46	21.32	5.31	4.12	22.03	22.09	22.61	4.07
Merged-chr7-112225802-3	chr7	112225724	112225924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177282)	promoter-TSS (NM_177282)	-12.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	99.33	69.92	123.22	87.68	94.91	102.85	74.07	121.09	43.47	43.18	74.87	34.46
Merged-chr1-181247345-3	chr1	181247250	181247450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35372.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	94.49	86.78	79.86	77.22	77.32	130.13	58.46	65.52	85.17	111.47	110.55	63.59
Merged-chr10-17788680-3	chr10	17788597	17788797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-7522.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	62.18	90.55	37.65	50.68	74.46	118.84	55.14	31.82	136.89	119.5	96.98	46.36
Merged-chr13-81110357-3	chr13	81110242	81110442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	146268.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	23.82	17.36	24.53	29.36	22.91	23.83	16.94	30.22	34.22	24.6	44.72	30.07
Merged-chr11-34389672-3	chr11	34389566	34389766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025382, intron 1 of 3)	intron (NM_001025382, intron 1 of 3)	74844.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	64.2	49.8	77.01	88.08	54.41	50.8	50.82	85.35	31.86	21.59	59.29	36.65
Merged-chr4-35223636-3	chr4	35223517	35223717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2263.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	46.03	33.96	26.81	35.39	53.59	40.14	35.54	46.88	63.53	46.19	67.33	30.7
Merged-chr16-4880594-3	chr16	4880498	4880698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-747.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	162.73	180.09	168.28	166.51	173.87	223.26	88.36	121.04	236.22	239.0	238.68	117.16
Merged-chr8-69920450-3	chr8	69920363	69920563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-17905.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	104.99	87.28	57.62	80.04	88.37	119.47	31.56	53.94	108.57	124.02	59.8	72.99
Merged-chr7-101108461-3	chr7	101108358	101108558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	-317.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	101.76	100.86	109.53	88.48	128.05	113.83	63.78	91.82	129.22	132.56	142.71	92.41
Merged-chr13-113920175-1	chr13	113920075	113920275	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	125667.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.02	0.0	2.85	4.83	0.0	1.88	5.31	9.73	16.52	8.54	21.1	17.54
Merged-chr8-126832176-4	chr8	126832108	126832308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16812.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	23.02	20.12	35.37	27.75	32.73	30.73	70.42	34.12	46.03	37.66	58.29	27.25
Merged-chr17-45554981-3	chr17	45554880	45555080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-720.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	18.98	24.9	35.94	21.72	18.0	32.3	12.29	15.2	39.34	27.62	47.23	25.69
Merged-chr5-146248903-3	chr5	146248794	146248994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	MMAR1|DNA|TcMar-Mariner	17644.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	23.02	17.36	47.35	44.24	44.59	22.89	25.91	33.84	30.68	33.14	37.69	25.69
Merged-chr15-67903169-3	chr15	67903077	67903277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	355679.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	39.98	23.39	50.77	43.44	52.37	39.82	32.55	40.32	41.89	53.73	49.75	24.43
Merged-chr14-50944129-3	chr14	50944031	50944231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-172.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	41.59	39.24	34.23	43.84	40.09	51.43	41.85	29.92	40.71	47.2	55.78	37.28
Merged-chr7-122101878-3	chr7	122101768	122101968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028177)	promoter-TSS (NM_028177)	-20.0	NM_028177	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	107.01	104.38	126.07	108.19	113.73	154.59	64.77	103.57	130.01	130.55	170.84	88.65
Merged-chr10-80105652-3	chr10	80105547	80105747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2945.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	60.97	60.87	50.2	37.81	69.96	75.26	30.89	29.94	83.59	88.37	67.84	24.12
Merged-chr4-12083430-3	chr4	12083352	12083552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	4505.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	24.23	23.14	22.25	31.37	22.5	26.03	13.95	24.03	47.4	30.13	53.77	29.45
Merged-chr11-40692666-3	chr11	40692568	40692768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134017)	promoter-TSS (NM_134017)	14.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	136.08	131.55	191.67	146.4	203.73	190.34	134.86	241.85	185.48	159.17	263.8	130.63
Merged-chr6-47830546-3	chr6	47830456	47830656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177882)	promoter-TSS (NM_177882)	-51.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	39.98	33.7	42.78	33.38	51.14	33.24	25.24	50.38	51.73	38.16	67.84	27.88
Merged-chr9-20544635-3	chr9	20544519	20544719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23200.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	60.57	41.5	51.91	48.26	58.09	50.17	41.52	63.45	70.61	74.81	94.47	43.23
Merged-chr15-28026123-3	chr15	28026029	28026229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-281.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	218.05	167.52	233.89	184.61	197.6	248.66	158.45	254.1	245.27	210.38	331.14	137.52
Merged-chr8-73314082-3	chr8	73313971	73314171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	39469.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	52.49	40.75	43.93	41.02	45.41	42.96	40.86	38.27	68.05	29.12	56.78	20.68
Merged-chr3-132035379-3	chr3	132035281	132035481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49911.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	31.5	19.87	38.22	37.4	41.32	34.18	37.2	42.03	31.67	20.08	65.32	12.22
Merged-chr9-50452611-3	chr9	50452486	50452686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41939.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	25.44	23.64	22.82	30.16	23.73	35.75	13.62	23.55	30.09	27.62	44.22	22.87
Merged-chr2-34781545-3	chr2	34781428	34781628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	9438.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	32.3	33.96	1.14	12.87	21.68	56.13	4.98	1.74	34.81	46.19	4.02	4.07
Merged-chr6-84043606-3	chr6	84043528	84043728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	24242.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	48.05	52.32	83.86	64.35	57.27	67.42	69.76	80.94	79.66	67.28	70.35	50.12
Merged-chr18-62548838-3	chr18	62548734	62548934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177829)	promoter-TSS (NM_177829)	29.0	NM_134136	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	199.88	174.81	176.27	146.8	202.92	241.14	147.82	193.94	208.1	187.79	250.74	112.15
Merged-chr7-127478391-1	chr7	127478291	127478491	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	6777.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	63.8	81.24	46.78	74.0	59.32	98.78	50.82	42.34	68.64	93.89	80.4	46.99
Merged-chr10-117906586-3	chr10	117906454	117906654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18905.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	14.94	15.59	31.95	18.9	24.55	38.26	35.87	25.6	33.44	27.11	37.69	31.33
Merged-chr6-128479932-3	chr6	128479859	128480059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	41202.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	35.53	26.66	36.51	48.26	41.73	48.29	34.21	49.46	72.58	55.73	94.47	39.47
Merged-chr3-69560149-3	chr3	69560061	69560261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38799.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	85.6	76.46	107.25	134.33	146.46	113.83	114.93	169.26	124.11	111.47	161.8	70.17
Merged-chr7-110796822-2	chr7	110796723	110796923	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	24219.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	8.08	4.53	24.53	6.03	49.5	48.29	40.52	54.31	26.75	30.13	27.13	21.3
Merged-chr4-132601493-3	chr4	132601403	132601603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	37436.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	33.52	35.72	56.48	22.52	58.91	69.3	48.16	48.17	50.75	52.22	53.77	36.34
Merged-chr6-113677558-3	chr6	113677457	113677657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-19493.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	65.41	45.78	91.84	71.19	110.87	118.53	81.38	133.63	77.69	91.38	117.08	75.18
Merged-chr15-73617821-3	chr15	73617701	73617901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357747)	promoter-TSS (NM_001357747)	-477.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	116.29	84.01	99.26	74.0	125.19	163.37	88.03	107.38	130.6	123.02	117.58	63.91
Merged-chr4-40970983-3	chr4	40970886	40971086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	43.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	49.26	35.21	34.23	45.85	62.18	66.16	33.88	39.48	84.18	91.89	101.0	56.7
Merged-chr11-58008739-3	chr11	58008638	58008838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028451)	promoter-TSS (NM_028451)	-326.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	38.36	33.45	29.66	33.78	69.14	75.26	22.59	28.74	65.5	65.78	67.84	38.53
Merged-chr7-29180641-3	chr7	29180550	29180750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	23.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	240.66	220.34	203.65	236.9	236.87	289.74	178.04	230.13	256.28	307.79	292.44	151.62
Merged-chr7-24081837-3	chr7	24081737	24081937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045486)	promoter-TSS (NM_001045486)	-60.0	NM_001289640	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	108.62	98.1	127.78	138.36	123.55	160.24	105.96	116.19	171.12	169.21	222.6	85.52
Merged-chr2-79636197-3	chr2	79636097	79636297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080558, intron 2 of 17)	CpG-8223	772.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	54.11	48.04	69.03	78.43	51.14	51.74	55.8	74.44	104.64	79.83	140.19	58.89
Merged-chr18-24603849-3	chr18	24603764	24603964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139143)	promoter-TSS (NM_139143)	-47.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	144.56	123.0	150.6	177.37	178.78	160.86	116.92	205.51	158.92	180.76	263.3	166.66
Merged-chr13-55593140-3	chr13	55593037	55593237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026211)	promoter-TSS (NM_026211)	2.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	38.36	43.51	42.78	52.69	56.05	61.77	29.9	55.85	71.0	73.31	100.5	43.54
Merged-chr7-141131272-3	chr7	141131183	141131383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013782)	promoter-TSS (NM_013782)	-3.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	54.11	53.58	43.35	41.02	42.14	55.19	23.25	38.13	43.47	65.78	70.85	36.34
Merged-chrX-12588426-3	chrX	12588325	12588525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	666.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	22.61	15.85	7.42	12.07	19.64	15.99	9.3	13.18	21.05	16.07	17.08	7.52
Merged-chr1-93343610-3	chr1	93343523	93343723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-22.0	NM_023200	66385.0	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	86.82	82.25	90.13	100.15	103.91	141.11	75.4	133.96	147.32	88.87	156.77	77.69
Merged-chr14-31641098-3	chr14	31640973	31641173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	16.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	52.9	66.15	68.45	67.57	87.96	76.83	68.1	70.21	59.6	64.77	90.45	62.34
Merged-chr9-119322847-3	chr9	119322772	119322972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	-445.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	219.26	194.93	173.99	185.41	207.82	267.16	150.81	174.56	306.44	337.42	366.81	190.78
Merged-chr17-65726983-3	chr17	65726884	65727084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	MIR3|SINE|MIR	45768.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	73.09	75.71	93.55	83.66	80.18	63.03	61.45	103.51	102.28	109.96	116.58	67.04
Merged-chr13-65112985-3	chr13	65112918	65113118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-36.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	71.88	74.96	69.03	79.64	54.0	72.12	44.84	66.22	100.11	104.44	134.16	61.71
Merged-chr6-5297567-3	chr6	5297507	5297707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	766.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	39.98	32.2	22.82	32.58	34.36	33.55	37.87	39.42	28.13	30.63	34.67	15.98
Merged-chr16-17619418-3	chr16	17619297	17619497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029945)	promoter-TSS (NM_029945)	43.0	NM_001164609	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	23.42	31.69	15.97	19.31	22.91	15.99	24.91	18.9	26.55	16.07	23.11	20.05
Merged-chr7-130858171-3	chr7	130858071	130858271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7553.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	106.2	87.03	123.22	123.07	91.64	96.27	107.96	101.94	148.3	96.91	176.87	62.34
Merged-chr18-53265089-3	chr18	53264993	53265193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	RLTR30D2_MM|LTR|ERV1	19431.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	79.95	59.61	73.02	42.23	116.19	112.89	114.27	74.16	122.54	111.47	103.01	53.26
Merged-chr9-114731169-3	chr9	114731080	114731280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-23.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	119.93	87.03	118.08	110.2	94.91	123.86	71.42	97.57	128.83	147.12	170.84	117.79
Merged-chr19-4147326-3	chr19	4147234	4147434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1329.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	31.9	25.66	35.37	28.56	29.86	55.82	36.54	29.16	51.73	38.16	37.69	26.94
Merged-chr6-122571481-3	chr6	122571376	122571576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17667.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	61.78	75.21	60.47	84.46	76.5	102.54	95.0	81.28	79.86	108.45	115.07	67.35
Merged-chr17-34028113-3	chr17	34028037	34028237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-82.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	64.2	38.74	46.21	30.16	40.5	73.69	40.52	47.92	72.18	47.2	71.35	30.07
Merged-chr17-27547431-3	chr17	27547320	27547520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9154.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	93.68	74.45	127.78	39.82	47.46	61.77	31.89	24.39	54.48	46.19	53.77	23.49
Merged-chr7-17027405-1	chr7	17027305	17027505	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	509.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	25.04	28.67	9.7	25.74	18.41	21.64	23.25	16.85	38.55	45.69	47.74	27.88
Merged-chr7-19076065-3	chr7	19075962	19076162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-138.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	37.96	20.88	34.8	17.7	45.82	33.24	28.23	36.67	70.81	77.32	140.7	54.51
Merged-chr7-43579754-5	chr7	43579597	43579797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172482, exon 1 of 4)	5' UTR (NM_172482, exon 1 of 4)	111.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	111.85	98.35	104.39	130.71	110.05	150.83	98.65	123.53	155.58	174.23	183.91	107.14
Merged-chr1-53855906-3	chr1	53855786	53855986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	6462.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	53.7	44.27	50.77	57.11	70.37	67.73	52.15	86.13	76.71	63.77	79.39	45.42
Merged-chr15-6386679-3	chr15	6386585	6386785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-63.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	76.72	62.13	62.18	85.27	71.59	79.33	65.11	73.29	61.37	71.8	65.32	33.21
Merged-chr2-145813012-3	chr2	145812908	145813108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	26892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	122.35	104.89	165.43	228.85	106.37	116.34	124.23	158.02	123.32	139.59	187.43	84.9
Merged-chr11-102245299-3	chr11	102245199	102245399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3583.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	39.17	24.15	39.36	28.15	50.32	47.35	39.86	55.18	81.63	85.86	65.83	68.61
Merged-chr17-43138544-3	chr17	43138434	43138634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19757.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	57.34	57.6	61.04	76.82	73.23	87.8	61.45	89.33	74.15	87.37	85.42	51.06
Merged-chr1-75210800-3	chr1	75210702	75210902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	-24.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	79.14	55.34	46.78	102.16	79.78	97.21	44.84	83.41	122.34	124.02	157.28	89.28
Merged-chr4-62479935-3	chr4	62479834	62480034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138653)	promoter-TSS (NM_138653)	-133.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	14.54	19.37	18.25	26.95	20.86	21.95	24.25	14.33	27.34	23.6	29.65	19.11
Merged-chr15-101372154-3	chr15	101372048	101372248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2023.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	34.73	21.13	17.11	24.13	29.86	53.31	19.27	29.24	52.32	21.09	30.65	20.99
Merged-chr7-127800547-3	chr7	127800430	127800630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133943)	promoter-TSS (NM_133943)	-79.0	NM_133943	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	52.9	41.75	35.37	43.44	30.68	58.64	34.88	55.49	62.55	57.74	84.92	46.36
Merged-chr17-33684825-3	chr17	33684741	33684941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145486)	TTS (NM_145486)	617.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	23.42	21.63	19.97	22.52	22.5	23.52	22.59	23.58	30.09	39.67	32.16	30.39
Merged-chr8-120816549-3	chr8	120816434	120816634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	77895.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	29.88	21.38	22.82	16.89	32.32	34.18	22.59	18.28	17.9	28.12	31.66	15.35
Merged-chr2-132598289-3	chr2	132598181	132598381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	85.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	31.09	23.39	40.5	39.42	43.36	49.54	36.87	64.4	64.32	28.12	78.39	32.89
Merged-chr15-75678807-3	chr15	75678710	75678910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-10.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	30.69	26.66	32.52	39.01	54.82	48.92	24.91	42.79	40.91	42.68	53.77	34.46
Merged-chr6-146888419-3	chr6	146888337	146888537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170433)	promoter-TSS (NM_001170433)	-57.0	NM_001355728	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	91.66	51.31	85.0	93.31	125.19	101.6	90.02	138.56	113.49	92.39	214.56	76.75
Merged-chr14-26858490-3	chr14	26858410	26858610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36094.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	28.27	21.63	33.09	20.91	19.64	12.54	26.24	31.63	28.32	37.16	48.24	26.0
Merged-chr2-148851392-3	chr2	148851305	148851505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029960)	promoter-TSS (NM_029960)	-471.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	23.82	29.68	25.67	32.18	31.09	26.65	33.22	37.88	27.73	29.62	35.68	26.94
Merged-chr18-24020421-3	chr18	24020330	24020530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357447)	promoter-TSS (NM_001357447)	-60.0	NM_001357447	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	91.66	73.45	86.14	88.48	85.91	113.51	82.05	102.79	120.37	117.99	193.96	68.29
Merged-chr1-52653561-3	chr1	52653471	52653671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MusHAL1|LINE|L1	22866.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	38.36	28.67	49.06	66.36	49.09	63.03	62.45	49.91	63.14	76.32	69.85	47.62
Merged-chr11-23895238-3	chr11	23895151	23895351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	19.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	67.03	68.67	88.99	60.73	85.91	89.68	59.46	84.79	88.9	60.75	119.59	65.79
Merged-chr6-34907977-3	chr6	34907872	34908072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	2859.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	119.12	126.52	103.25	87.28	133.78	174.35	159.77	132.39	150.86	130.55	127.63	78.94
Merged-chr13-67484245-3	chr13	67484147	67484347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	6.0	NM_001076791	408067.0	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	31.9	23.64	18.25	35.8	37.23	35.43	36.87	45.59	46.03	54.23	66.83	36.34
Merged-chr3-100685702-6	chr3	100685608	100685808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010763)	promoter-TSS (NM_010763)	-235.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	23.42	32.95	31.95	27.75	40.91	36.06	33.22	30.64	32.45	40.67	39.19	32.27
Merged-chr7-81849413-3	chr7	81849307	81849507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9594.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	139.71	120.98	150.6	152.84	137.05	172.47	122.24	153.67	157.74	175.23	184.91	83.64
Merged-chr8-4324756-1	chr8	4324656	4324856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_033527)	promoter-TSS (NR_033527)	344.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	24.63	35.97	26.24	18.1	19.64	19.13	39.2	24.36	32.65	34.14	24.62	20.05
Merged-chr9-66879682-3	chr9	66879585	66879785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	L1MA4|LINE|L1	40020.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	50.47	19.62	22.25	20.91	45.41	45.78	17.27	29.55	30.68	26.61	21.1	14.1
Merged-chr11-49203387-3	chr11	49203299	49203499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-101.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	113.06	136.33	107.25	119.05	86.32	150.83	86.03	83.19	151.65	193.31	158.28	106.51
Merged-chr18-81585375-3	chr18	81585276	81585476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	406704.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	28.27	25.91	35.94	37.4	22.91	22.26	34.21	36.39	41.3	68.79	84.42	34.15
Merged-chr5-115137751-1	chr5	115137651	115137851	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2776.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	5.65	11.07	4.56	5.63	4.5	14.42	4.32	9.53	5.31	2.51	4.52	5.33
Merged-chr11-108425145-3	chr11	108425035	108425235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029606)	promoter-TSS (NM_029606)	-131.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	122.35	130.04	124.36	93.31	118.23	172.15	95.67	98.69	172.5	157.66	173.86	83.33
Merged-chr7-30729555-3	chr7	30729453	30729653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-19.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	45.23	51.06	31.38	33.78	53.59	59.58	28.23	39.45	85.56	84.35	41.2	41.98
Merged-chr5-135471931-3	chr5	135471828	135472028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73194.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	44.01	28.42	62.75	46.66	107.19	85.61	77.4	99.34	62.15	68.29	86.93	58.27
Merged-chr4-44234650-3	chr4	44234556	44234756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13389.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	57.74	59.36	51.34	40.22	51.96	56.13	42.52	37.46	50.75	48.7	59.29	21.93
Merged-chr4-124709180-3	chr4	124709082	124709282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010213)	TTS (NM_010213)	-5679.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	38.76	22.64	37.08	18.9	32.73	35.43	19.27	26.44	47.21	43.68	52.26	29.76
Merged-chr19-34442238-3	chr19	34442132	34442332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32903.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	41.99	50.81	74.16	52.29	62.18	49.23	32.22	67.43	69.63	46.19	68.84	43.54
Merged-chr13-69534817-3	chr13	69534735	69534935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-971.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	204.72	197.2	163.15	174.96	223.37	201.0	149.81	211.29	264.35	242.52	300.99	166.34
Merged-chr17-88113502-3	chr17	88113307	88113507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-12105.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	66.22	47.54	52.48	55.5	66.68	99.72	68.76	62.83	69.82	95.4	72.36	56.7
Merged-chr17-84958540-3	chr17	84958438	84958638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027930)	promoter-TSS (NR_027930)	537.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	26.65	35.72	30.23	18.1	10.64	13.8	28.23	26.97	38.35	43.68	41.2	29.45
Merged-chr1-128417365-3	chr1	128417251	128417451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177445)	promoter-TSS (NM_177445)	65.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	60.17	41.75	51.34	41.43	70.77	43.9	40.86	44.58	74.94	67.78	78.89	53.88
Merged-chr5-23999694-1	chr5	23999594	23999794	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310471, intron 2 of 10)	intron (NM_001310471, intron 2 of 10)	30618.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.23	3.02	2.85	9.25	2.86	5.02	7.97	9.98	5.7	5.52	15.07	6.27
Merged-chr17-57247846-3	chr17	57247759	57247959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-170.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	219.66	185.38	215.06	227.65	244.64	259.01	223.55	231.45	247.24	266.12	314.05	159.77
Merged-chr1-77516381-3	chr1	77516270	77516470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1282.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	19.38	16.35	29.66	28.96	24.96	22.58	22.59	38.24	13.57	17.57	27.13	15.35
Merged-chr3-108134856-3	chr3	108134735	108134935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	11317.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	24.63	23.64	40.5	45.05	30.68	47.04	30.56	49.32	49.57	24.1	47.74	31.33
Merged-chr2-133550645-3	chr2	133550531	133550731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1528.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	57.34	49.55	51.34	74.81	45.82	48.92	65.44	65.1	84.77	55.73	77.38	53.26
Merged-chr8-69654449-3	chr8	69654339	69654539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177527)	promoter-TSS (NM_001177527)	-117.0	NM_001177527	636741.0	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	68.65	48.04	51.34	73.2	105.96	117.59	65.44	93.48	77.89	83.85	98.99	43.54
Merged-chr5-96792608-3	chr5	96792513	96792713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	-772.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	21.0	17.61	35.37	30.57	18.41	21.32	28.9	28.96	46.62	29.12	41.2	29.45
Merged-chr2-166826986-3	chr2	166826895	166827095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085495, intron 2 of 38)	intron (NM_001085495, intron 2 of 38)	21414.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	16.56	20.37	22.82	20.91	23.73	25.4	21.59	35.19	38.35	23.6	43.21	24.75
Merged-chr2-32586995-3	chr2	32586918	32587118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-60.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	126.79	152.93	141.47	144.79	177.96	193.16	140.84	158.08	193.15	201.85	216.57	111.21
Merged-chr10-78298299-3	chr10	78298215	78298415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	41892.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	31.9	28.67	53.05	34.59	38.05	50.49	37.87	53.86	25.77	18.08	31.66	26.31
Merged-chr11-85352748-2	chr11	85352648	85352848	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-416.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	38.76	30.94	38.79	20.11	40.09	58.32	25.24	27.7	58.81	43.68	45.22	36.97
Merged-chr4-120879658-3	chr4	120879540	120879740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 3 of 7)	MIR3|SINE|MIR	24841.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	40.78	42.01	33.09	28.15	70.37	81.84	78.72	55.68	73.17	90.88	84.92	31.01
Merged-chr7-80828627-3	chr7	80828518	80828718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25287.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	24.63	17.86	41.64	27.35	41.73	45.78	39.86	40.15	30.09	24.1	28.14	16.6
Merged-chr12-88445646-3	chr12	88445558	88445758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361598, intron 5 of 9)	intron (NM_001361598, intron 5 of 9)	-68335.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	25.04	21.13	36.51	20.51	33.96	37.0	27.9	49.43	52.12	35.65	46.73	25.69
Merged-chr6-113351798-3	chr6	113351697	113351897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7875.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	48.86	38.74	41.07	34.19	36.41	36.37	30.56	53.86	35.6	43.18	50.75	35.09
Merged-chr12-83688158-3	chr12	83688059	83688259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	7.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	65.82	54.33	51.34	60.73	76.91	92.19	30.89	71.33	83.4	92.89	109.54	52.0
Merged-chr5-138683246-3	chr5	138683147	138683347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60388.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	29.88	18.86	41.07	37.4	37.64	45.78	35.54	43.6	47.8	42.68	63.82	39.16
Merged-chr9-65545802-3	chr9	65545688	65545888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34299.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	128.0	107.15	181.98	151.23	144.0	142.05	129.21	133.91	127.26	111.97	181.9	107.45
Merged-chr6-97820855-3	chr6	97820770	97820970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	13812.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	88.84	81.5	83.86	68.37	78.96	143.62	76.07	97.07	106.01	133.06	119.59	48.24
Merged-chr2-28495266-3	chr2	28495193	28495393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-1598.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	45.63	50.56	82.15	43.44	67.5	77.14	30.56	42.11	98.15	83.85	78.89	51.06
Merged-chr12-52503836-3	chr12	52503757	52503957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12220.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	82.37	58.86	50.2	66.77	84.28	61.77	44.84	69.59	77.3	97.41	89.94	37.91
Merged-chr17-22361505-4	chr17	22361349	22361549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176962)	promoter-TSS (NM_176962)	-4.0	NM_001347330	224598.0	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	14.13	18.61	23.96	24.53	15.96	24.77	21.92	12.36	26.36	52.22	41.2	36.65
Merged-chr8-129263640-3	chr8	129263541	129263741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144501)	promoter-TSS (NR_144501)	11.0	NR_144501	102635552.0		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	48.05	55.08	77.01	83.66	64.23	66.16	60.79	27.0	80.64	61.76	91.95	60.46
Merged-chr19-34270413-3	chr19	34270363	34270563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15090.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	15.34	19.37	15.97	8.45	15.14	20.07	9.97	12.0	31.08	40.17	29.65	16.92
Merged-chr4-101329297-3	chr4	101329196	101329396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	17731.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	25.84	29.43	62.18	71.59	48.27	37.63	54.48	74.58	49.37	31.13	55.78	28.51
Merged-chr13-43789192-3	chr13	43789106	43789306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	4094.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	128.0	127.02	150.03	135.54	142.37	176.54	129.88	149.97	161.48	143.6	197.98	129.38
Merged-chr12-85513833-3	chr12	85513739	85513939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39949.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	17.36	19.37	19.4	0.0	27.0	76.83	20.26	3.76	40.71	50.71	22.11	2.82
Merged-chr2-71453289-3	chr2	71453189	71453389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025633)	promoter-TSS (NM_025633)	-49.0	NM_025633	66559.0	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	55.72	28.67	29.66	40.22	71.59	70.87	38.53	75.11	69.82	46.19	80.9	36.65
Merged-chr9-80067602-5	chr9	80067555	80067755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311110, intron 1 of 23)	CpG	752.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	34.73	22.39	19.97	25.34	21.27	24.15	33.88	19.96	24.0	26.11	19.6	15.04
Merged-chr4-132573547-3	chr4	132573462	132573662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	9495.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	37.96	39.99	33.09	22.52	38.86	52.05	21.26	29.19	57.43	37.66	33.67	40.1
Merged-chr14-9635685-3	chr14	9635568	9635768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-248427.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	12.92	21.38	30.23	37.0	24.96	13.48	40.19	42.48	32.26	33.14	37.69	17.54
Merged-chr14-31251374-3	chr14	31251237	31251437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	-22.0	NR_153760	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	64.61	57.6	49.06	51.08	63.0	81.53	45.51	40.63	110.15	123.52	121.1	78.32
Merged-chr4-40852107-3	chr4	40852005	40852205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	MIRb|SINE|MIR	-1967.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	23.82	15.34	39.36	39.82	31.09	27.91	19.6	46.18	34.81	34.14	66.33	27.57
Merged-chr1-91231976-2	chr1	91231873	91232073	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18331.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	10.5	6.29	9.7	8.45	22.91	25.09	20.26	22.88	22.23	21.09	23.62	13.16
Merged-chr13-98867959-3	chr13	98867844	98868044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23098.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	32.3	31.44	42.78	36.6	29.05	37.0	27.9	46.49	39.53	19.58	50.75	19.42
Merged-chr9-32652421-3	chr9	32652347	32652547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-43595.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	23.42	18.36	23.96	34.19	41.73	41.08	15.28	50.13	30.29	33.64	37.18	20.99
Merged-chr10-57794796-3	chr10	57794665	57794865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020561, exon 1 of 8)	exon (NM_020561, exon 1 of 8)	221.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	88.03	119.98	82.72	107.79	133.37	152.08	185.02	136.26	89.1	149.13	131.65	69.86
Merged-chr19-41372561-3	chr19	41372456	41372656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	12514.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	27.46	28.93	38.79	33.38	36.82	43.27	27.57	47.02	38.35	26.61	37.69	18.8
Merged-chr9-71162711-3	chr9	71162618	71162818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271843)	promoter-TSS (NM_001271843)	-85.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	33.52	27.92	39.93	40.62	44.59	28.85	24.58	43.35	52.91	53.22	55.78	33.83
Merged-chr15-27675268-3	chr15	27675127	27675327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	6315.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	66.63	50.81	60.47	37.81	68.32	72.75	38.86	70.46	61.17	62.76	53.77	45.74
Merged-chr10-95306571-1	chr10	95306471	95306671	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	17138.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.27	4.02	6.85	9.25	3.27	3.14	15.61	9.81	3.93	2.51	16.08	4.39
Merged-chr4-85005787-3	chr4	85005683	85005883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175275, intron 11 of 25)	intron (NM_175275, intron 11 of 25)	121474.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	20.59	16.85	34.23	39.01	22.09	16.31	23.92	34.35	21.83	21.59	40.7	24.43
Merged-chr9-85588272-3	chr9	85588177	85588377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161057.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	29.48	33.7	25.1	39.01	40.09	44.84	18.27	38.41	41.11	38.66	46.73	22.56
Merged-chr2-155276390-3	chr2	155276312	155276512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	48.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	85.6	61.12	69.6	58.32	89.18	108.81	56.47	72.87	107.2	115.48	118.08	78.0
Merged-chr17-31058939-3	chr17	31058843	31059043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	1249.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	75.91	57.35	79.86	65.16	67.91	100.66	81.05	93.9	62.55	45.69	69.34	51.69
Merged-chr14-73509948-3	chr14	73509840	73510040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-109.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	46.84	46.78	41.64	36.2	50.73	62.71	40.19	44.92	104.44	80.34	80.9	52.0
Merged-chr2-27688180-3	chr2	27688083	27688283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10982.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	97.72	80.24	85.57	102.16	105.96	80.59	57.8	91.01	76.71	62.76	105.52	49.5
Merged-chr9-7871295-3	chr9	7871197	7871397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1873.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	19.79	14.59	29.09	12.87	16.77	19.76	18.93	20.19	28.13	23.1	37.69	18.48
Merged-chr13-74522564-3	chr13	74522466	74522666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28616.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	45.23	34.21	39.36	44.64	44.59	28.22	56.47	34.99	44.65	27.62	49.75	42.29
Merged-chr2-166996353-3	chr2	166996277	166996477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-78.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	102.16	87.78	78.72	103.77	160.37	130.13	87.69	99.31	142.99	122.01	213.05	67.67
Merged-chr1-131015571-3	chr1	131015467	131015667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4278.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	22.21	38.23	38.79	20.11	68.73	96.58	43.85	47.66	57.43	59.75	71.35	31.95
Merged-chr6-129180538-3	chr6	129180442	129180642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-73.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	94.89	132.05	115.8	103.77	120.69	126.06	83.04	112.51	150.47	142.1	148.23	89.59
Merged-chr8-18936407-3	chr8	18936310	18936510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	14461.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	111.45	102.62	108.39	137.55	141.96	152.08	142.17	172.4	185.87	180.26	225.11	99.93
Merged-chrM-14244-2	chrM	14144	14344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											34816.47	35824.12	42051.78	46505.55	33796.04	40507.65	40950.03	43403.53	0.0	0.0	0.0	0.0
Merged-chr5-139460607-3	chr5	139460519	139460719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-85.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	88.84	82.75	71.88	87.28	88.37	109.75	32.22	64.65	125.68	109.96	92.96	61.71
Merged-chr9-87171680-3	chr9	87171551	87171751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101482, intron 2 of 3)	B3|SINE|B2	22423.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	26.65	46.28	47.92	54.7	49.91	39.2	46.84	101.19	39.14	29.12	65.32	37.59
Merged-chr2-104122725-3	chr2	104122612	104122812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026634)	promoter-TSS (NM_026634)	-57.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	64.2	55.59	57.62	57.51	77.73	76.51	56.14	80.64	75.72	73.31	102.0	39.16
Merged-chr4-150566388-3	chr4	150566295	150566495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	85779.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	102.56	70.93	100.97	124.28	108.41	82.47	69.09	124.37	90.87	82.85	112.56	70.48
Merged-chr11-50131391-3	chr11	50131322	50131522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	62.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	48.86	70.43	35.94	50.27	64.64	39.51	58.13	35.94	80.05	81.84	87.93	50.44
Merged-chr2-164822933-3	chr2	164822838	164823038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178375)	TTS (NM_178375)	252.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	143.75	113.69	120.37	120.26	150.55	163.69	91.68	118.57	210.26	161.18	200.49	102.12
Merged-chr11-79253373-3	chr11	79253276	79253476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	1319.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	41.99	44.77	38.22	27.75	40.91	62.4	27.24	33.39	64.91	49.21	45.22	27.57
Merged-chr5-5367708-3	chr5	5367592	5367792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	12559.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	37.96	23.14	19.4	51.88	43.36	39.82	26.91	49.93	34.62	30.63	23.62	19.42
Merged-chr3-103017528-3	chr3	103017419	103017619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3027.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	40.78	35.97	44.5	61.94	50.32	63.66	59.79	82.88	60.38	59.25	74.37	48.24
Merged-chr5-123907141-3	chr5	123907048	123907248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-127.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	121.14	125.26	120.94	70.79	120.28	188.46	73.08	80.86	151.25	151.64	135.67	80.51
Merged-chr3-106548398-3	chr3	106548304	106548504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-602.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	19.79	18.86	24.53	30.97	33.96	35.75	37.2	59.02	38.94	12.05	65.32	40.41
Merged-chr13-104287039-3	chr13	104286950	104287150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081020)	promoter-TSS (NM_001081020)	-785.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	57.74	52.32	69.6	62.74	63.0	67.1	62.45	93.06	99.72	62.26	116.07	89.59
Merged-chr5-139015188-3	chr5	139015071	139015271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20218.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	52.49	62.13	78.72	79.23	112.5	97.52	95.0	103.96	81.43	101.43	71.35	44.48
Merged-chr11-98810079-1	chr11	98809979	98810179	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	10.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	16.56	14.34	6.28	13.27	16.77	25.4	12.95	15.08	18.49	29.62	31.15	17.54
Merged-chr13-38528454-3	chr13	38528392	38528592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-8.0	NM_145367	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	27.05	12.58	23.39	26.55	36.82	36.69	24.58	30.11	38.75	41.17	25.12	31.95
Merged-chr4-127077470-3	chr4	127077366	127077566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285885)	promoter-TSS (NM_001285885)	83.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	102.16	93.82	81.0	58.72	88.37	127.31	40.86	65.16	136.89	113.98	119.09	58.89
Merged-chrX-101222498-3	chrX	101222310	101222510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018875, exon 1 of 5)	exon (NM_018875, exon 1 of 5)	153.0	NM_001110311	55988.0	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	12.52	21.13	23.96	33.38	18.82	29.48	40.52	23.5	19.47	36.15	23.11	23.49
Merged-chr1-13256377-3	chr1	13256273	13256473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 2 of 22)	intron (NM_008678, intron 2 of 22)	116056.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	21.8	13.08	17.11	22.12	26.18	21.01	23.58	29.47	91.85	94.9	106.53	51.06
Merged-chr7-38071252-2	chr7	38071156	38071356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36234.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	8.88	16.6	28.52	33.78	38.46	17.56	22.26	32.22	4.92	5.52	6.53	4.07
Merged-chr15-64088565-3	chr15	64088446	64088646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28098.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	53.3	46.03	60.47	51.88	50.32	58.95	45.84	61.71	36.78	38.66	53.77	41.66
Merged-chr15-83033345-3	chr15	83033241	83033441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	56.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	83.59	65.9	96.41	82.45	94.91	92.82	62.12	88.43	79.86	70.8	93.96	58.27
Merged-chr19-44582849-3	chr19	44582745	44582945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19991.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	45.63	38.48	39.36	42.23	35.59	39.51	24.91	35.69	35.6	32.13	63.31	20.68
Merged-chr5-150599688-3	chr5	150599587	150599787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001362416)	TTS (NM_001362416)	-5162.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	23.42	38.74	23.39	16.89	34.36	25.71	35.87	21.79	36.39	33.14	36.68	22.24
Merged-chr12-110888303-3	chr12	110888209	110888409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081057)	promoter-TSS (NM_001081057)	836.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	19.79	18.36	18.25	15.69	37.23	34.81	25.91	35.02	36.58	49.21	33.16	25.37
Merged-chr16-17182352-3	chr16	17182247	17182447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009456, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	19145.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	33.11	25.15	18.25	36.2	40.5	47.98	22.59	39.31	29.31	30.63	34.17	17.23
Merged-chr9-99243350-3	chr9	99243240	99243440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	-1.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	115.89	104.89	122.65	126.29	161.19	158.04	74.07	135.08	190.0	158.67	213.56	108.39
Merged-chr2-4555422-3	chr2	4555317	4555517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-4337.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	72.68	61.62	62.18	93.71	91.64	84.98	66.1	87.39	58.61	59.25	109.04	56.07
Merged-chr11-4232832-1	chr11	4232732	4232932	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3953.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	6.46	2.26	5.13	4.42	56.46	69.3	104.3	65.05	1.77	2.51	4.02	1.88
Merged-chr9-61946877-3	chr9	61946760	61946960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-61.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	149.0	153.18	166.0	120.26	163.64	169.02	79.06	105.9	176.82	170.72	178.38	106.82
Merged-chr1-45865915-3	chr1	45865813	45866013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59681.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	16.56	16.6	30.23	26.14	33.14	31.04	32.22	50.44	17.51	22.09	37.69	14.72
Merged-chr19-5712134-3	chr19	5712027	5712227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	7656.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	23.82	28.17	26.24	20.51	43.77	37.94	25.24	24.67	62.55	61.76	90.95	41.98
Merged-chrX-13506566-3	chrX	13506475	13506675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38903.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	31.5	20.12	33.09	44.64	42.14	30.1	47.5	47.41	41.3	30.63	60.8	28.51
Merged-chr5-141080532-3	chr5	141080435	141080635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-79939.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	47.65	34.21	62.75	70.38	72.82	47.66	52.15	77.52	52.12	48.7	77.38	43.54
Merged-chr17-24478888-3	chr17	24478801	24479001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252463, intron 1 of 8)	CpG	177.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	70.26	58.86	59.33	56.31	64.64	79.33	62.12	49.18	54.48	53.73	52.26	55.76
Merged-chr1-16798489-3	chr1	16798391	16798591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110035.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	60.97	41.5	51.34	50.68	36.0	61.46	48.5	115.71	77.3	43.18	101.0	36.34
Merged-chr8-126667065-3	chr8	126666963	126667163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73627.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	15.75	11.57	21.68	8.45	22.91	16.31	17.94	26.78	21.05	8.54	27.64	11.9
Merged-chr2-69713502-3	chr2	69713403	69713603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177244)	promoter-TSS (NM_177244)	-897.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	39.57	42.51	58.76	69.58	66.68	60.83	61.12	72.7	58.22	50.71	124.11	46.99
Merged-chr10-118820062-3	chr10	118819975	118820175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48828.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	33.52	27.92	39.93	36.2	58.5	52.99	69.09	85.77	35.21	31.63	74.87	23.18
Merged-chr3-96580321-3	chr3	96580225	96580425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027241, intron 5 of 7)	intron (NM_027241, intron 5 of 7)	-13524.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	37.96	50.05	44.5	44.24	72.41	65.85	27.24	48.17	82.02	37.16	71.86	50.44
Merged-chr11-103404010-3	chr11	103403914	103404114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	8650.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	73.89	41.75	74.16	57.51	42.14	53.62	55.8	60.42	53.11	43.68	81.4	54.82
Merged-chr12-31634663-3	chr12	31634578	31634778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-20.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	37.55	26.66	44.5	20.91	42.96	59.89	28.23	39.0	75.72	69.29	64.32	30.39
Merged-chr18-5334369-3	chr18	5334226	5334426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360447, intron 1 of 4)	CpG	113.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	116.7	97.09	142.61	106.99	133.78	127.31	100.65	123.84	171.12	142.6	165.32	94.29
Merged-chr18-25168881-3	chr18	25168786	25168986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142698)	promoter-TSS (NM_001142698)	-9.0	NM_001004361	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	104.58	108.41	77.58	134.74	102.68	130.45	176.71	162.25	96.77	128.54	145.72	106.82
Merged-chr2-159557708-3	chr2	159557619	159557819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-389622.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	30.28	18.61	38.79	32.98	40.09	55.19	20.26	53.78	47.6	55.73	54.27	31.64
Merged-chr4-46452480-4	chr4	46452400	46452600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	CpG	1574.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	18.57	15.85	13.69	15.28	18.82	32.93	20.93	16.68	24.19	32.13	25.63	16.92
Merged-chr7-126487269-3	chr7	126487162	126487362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-93.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	96.51	84.26	106.1	106.99	89.59	127.94	83.37	99.73	111.52	132.56	172.35	76.75
Merged-chr4-150488318-3	chr4	150488222	150488422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163852.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	93.28	99.35	144.33	147.61	96.96	127.94	119.58	145.18	95.0	80.34	156.27	74.56
Merged-chr13-51846596-3	chr13	51846497	51846697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-78.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	122.75	140.35	130.63	157.26	135.0	178.74	118.25	129.39	193.34	205.86	217.07	115.91
Merged-chr10-118981271-1	chr10	118981171	118981371	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-54128.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	12.11	11.07	17.11	16.09	28.64	29.79	16.94	19.96	34.22	32.13	32.66	26.0
Merged-chr16-91834240-3	chr16	91834163	91834363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 16 of 28)	URR1B|DNA|hAT-Charlie	97367.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	19.38	14.09	27.38	18.9	24.96	30.1	33.88	21.73	39.73	30.13	44.22	18.8
Merged-chr17-3114954-3	chr17	3114840	3115040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-32.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	117.1	115.2	132.92	130.71	112.5	135.46	116.92	155.27	165.22	147.62	213.05	113.4
Merged-chr15-64082439-1	chr15	64082339	64082539	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21991.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.44	6.04	8.56	4.42	2.45	2.2	16.61	7.74	6.49	6.03	10.05	3.76
Merged-chr17-56585339-3	chr17	56585227	56585427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	345.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	37.96	49.55	15.97	25.34	47.87	35.12	24.91	21.59	56.84	45.19	51.25	36.65
Merged-chr7-25619369-3	chr7	25619267	25619467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025504)	promoter-TSS (NM_025504)	-47.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	60.17	45.28	38.22	59.93	52.77	72.44	32.22	60.36	54.09	68.79	54.27	46.36
Merged-chr5-101997521-3	chr5	101997437	101997637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	72384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	15.75	18.86	21.68	4.42	28.64	38.26	15.94	13.37	25.77	29.12	22.61	12.22
Merged-chr2-159593019-3	chr2	159592914	159593114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-354327.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	24.23	15.85	21.68	27.75	45.0	31.67	20.26	46.04	19.87	28.62	49.75	27.88
Merged-chr10-20990805-3	chr10	20990725	20990925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358561, intron 15 of 22)	intron (NM_001358561, intron 15 of 22)	38278.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	28.27	18.36	42.21	35.8	33.14	37.94	33.88	55.91	44.06	36.15	36.18	26.94
Merged-chr6-97504946-3	chr6	97504865	97505065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-17145.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	34.73	13.58	21.11	29.36	22.91	14.42	23.25	29.07	39.93	24.1	37.69	31.33
Merged-chr18-34861099-7	chr18	34860989	34861189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007913)	promoter-TSS (NM_007913)	-118.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	139.31	153.18	111.24	107.39	141.96	238.94	126.89	113.89	197.47	298.75	229.63	154.13
Merged-chr3-67576460-3	chr3	67576339	67576539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6329.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	34.32	32.2	32.52	30.16	61.37	73.38	42.19	66.31	60.58	89.88	48.74	26.0
Merged-chrUn_JH584304-17378-1	chrUn_JH584304	17278	17478	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR21|LTR|ERVK	42311.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.49	17.57	8.04	5.64
Merged-chr4-136123226-3	chr4	136123140	136123340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20582.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	44.42	39.99	44.5	57.51	53.59	78.71	44.84	66.98	66.87	81.34	79.89	55.13
Merged-chr6-134897446-1	chr6	134897346	134897546	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029441)	promoter-TSS (NR_029441)	379.0	NM_001167695	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	11.31	6.54	3.42	4.83	11.86	4.7	7.31	10.32	7.08	5.02	18.09	6.58
Merged-chr16-14135222-3	chr16	14135121	14135321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 13 of 26)	ORR1B2|LTR|ERVL-MaLR	24053.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	32.71	25.4	35.37	53.49	33.14	21.95	45.18	54.14	30.49	25.61	43.21	29.13
Merged-chr9-57130730-3	chr9	57130622	57130822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028636)	promoter-TSS (NM_028636)	-55.0	NM_028636	73744.0	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	32.71	35.47	34.8	32.18	40.5	41.71	18.6	27.84	47.8	35.15	57.28	26.0
Merged-chr7-99535038-3	chr7	99534946	99535146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177231)	promoter-TSS (NM_177231)	-440.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	18.57	20.88	26.81	24.13	27.82	21.01	8.64	23.78	21.64	8.54	10.05	16.92
Merged-chr12-9006296-3	chr12	9006210	9006410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172470, intron 14 of 27)	intron (NM_172470, intron 14 of 27)	-23687.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	24.23	25.4	21.68	24.53	36.82	48.92	29.23	36.95	21.24	16.07	29.14	15.04
Merged-chr19-4070902-3	chr19	4070796	4070996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-11449.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	60.17	43.26	46.21	52.69	72.82	65.54	73.08	65.78	70.02	55.73	77.88	40.41
Merged-chr9-107542097-3	chr9	107541983	107542183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019720)	promoter-TSS (NM_019720)	110.0	NM_001357290	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	26.65	22.89	14.26	43.04	30.68	29.79	25.91	23.02	25.57	34.65	40.7	23.49
Merged-chr16-90810508-3	chr16	90810395	90810595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029497)	promoter-TSS (NM_029497)	-82.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	122.35	133.56	102.11	96.53	143.19	184.69	83.04	88.4	186.07	149.13	154.76	96.49
Merged-chr5-74531803-3	chr5	74531741	74531941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178672)	promoter-TSS (NM_178672)	-99.0	NM_001114660	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	81.16	77.97	77.58	106.18	93.28	106.3	63.44	107.97	92.64	81.84	86.93	58.27
Merged-chr13-101844213-3	chr13	101844115	101844315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75998.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	31.09	25.4	33.09	40.22	35.59	30.73	39.2	47.24	40.91	45.69	46.73	30.07
Merged-chr6-88108227-3	chr6	88108106	88108306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3948.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	34.32	29.43	38.79	25.34	41.32	39.2	33.22	50.64	49.57	54.73	55.27	27.25
Merged-chr2-26360984-3	chr2	26360900	26361100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1453.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	69.86	54.58	79.29	56.31	85.91	63.03	48.5	67.43	76.71	87.87	124.11	59.21
Merged-chr12-40626695-3	chr12	40626591	40626791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 4 of 52)	intron (NM_172803, intron 4 of 52)	180638.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	89.24	64.64	97.55	86.88	89.59	109.12	108.95	126.25	108.77	103.94	98.49	69.55
Merged-chr15-101190944-3	chr15	101190856	101191056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 1 of 8)	MIR3|SINE|MIR	-2913.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	48.86	51.31	47.35	42.23	47.87	54.88	37.87	58.35	68.05	55.23	71.35	45.11
Merged-chr6-134796553-3	chr6	134796432	134796632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151455, exon 1 of 2)	non-coding (NR_151455, exon 1 of 2)	882.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	102.16	100.61	123.79	145.6	70.77	65.22	58.13	72.34	100.9	89.88	132.15	55.45
Merged-chr6-47778530-3	chr6	47778393	47778593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25159.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	15.75	17.1	15.97	16.89	26.18	23.52	23.25	30.2	42.48	46.19	36.18	30.7
Merged-chr4-130902395-3	chr4	130902297	130902497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10937.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	41.59	22.64	43.35	25.74	38.46	29.79	49.49	73.68	41.11	26.61	45.22	29.45
Merged-chr2-172370635-3	chr2	172370631	172370831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291185)	promoter-TSS (NM_001291185)	-161.0	NM_011497	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	54.92	63.89	49.63	72.8	67.91	90.94	66.77	55.88	69.43	84.86	83.91	42.92
Merged-chr17-28260093-3	chr17	28259989	28260189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-11619.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	64.61	50.31	87.85	45.05	98.18	118.84	100.32	113.52	122.54	111.47	130.14	70.17
Merged-chr17-45556807-3	chr17	45556633	45556833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1033.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	25.44	18.86	18.83	13.67	21.27	26.34	30.56	5.92	29.5	31.63	19.09	13.78
Merged-chr3-152478187-3	chr3	152478069	152478269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81485.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	21.4	24.65	34.8	31.37	22.5	13.8	21.26	31.43	27.73	33.64	31.66	23.49
Merged-chr10-22301773-3	chr10	22301671	22301871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	ORR1C1|LTR|ERVL-MaLR	-4949.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	50.47	31.69	41.64	45.05	45.0	42.96	29.56	45.53	27.34	17.57	43.21	24.43
Merged-chr5-135369963-3	chr5	135369856	135370056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145414)	promoter-TSS (NM_145414)	3.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	31.5	21.13	27.38	22.12	29.86	30.1	20.59	25.82	48.98	56.24	41.2	17.23
Merged-chr2-5714903-1	chr2	5714803	5715003	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-141.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	23.42	17.1	30.23	13.27	26.18	24.46	22.59	20.41	20.46	25.11	35.17	13.78
Merged-chr5-18000340-3	chr5	18000253	18000453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37783.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	95.3	54.08	110.1	103.77	125.59	99.72	97.66	114.7	111.92	97.41	86.93	77.69
Merged-chr7-5101482-3	chr7	5101426	5101626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15385.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	91.26	97.34	127.78	124.28	74.46	89.37	84.7	117.84	79.46	73.31	106.02	56.7
Merged-chr5-23874658-3	chr5	23874563	23874763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22430.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	58.95	33.7	34.23	35.39	60.55	69.93	32.55	72.9	74.54	48.2	69.85	39.16
Merged-chr19-27429927-3	chr19	27429857	27430057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	-49.0	NR_131940	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	199.07	202.48	195.1	171.34	159.96	198.18	152.13	174.7	218.52	236.49	294.45	131.89
Merged-chr16-24393096-5	chr16	24393060	24393260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178665)	promoter-TSS (NM_178665)	-190.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	25.04	13.33	37.08	25.34	30.27	31.36	22.59	26.78	22.82	22.09	29.65	27.25
Merged-chr15-66856723-3	chr15	66856632	66856832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24903.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	24.63	25.15	41.64	33.38	45.41	28.22	46.5	44.97	31.86	29.12	45.22	26.31
Merged-chr3-144198704-3	chr3	144198608	144198808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161769, intron 2 of 4)	CpG	3624.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	36.34	30.94	26.81	49.07	54.82	39.51	24.25	34.12	38.94	27.62	52.76	16.6
Merged-chr9-40800130-3	chr9	40800015	40800215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1158.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	41.99	31.94	21.68	46.25	51.55	47.98	38.2	51.31	50.94	31.13	64.82	37.91
Merged-chr14-67072072-3	chr14	67071968	67072168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360034, intron 1 of 8)	CpG	403.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	41.99	36.47	19.97	40.22	33.14	56.13	48.83	31.79	36.78	51.72	57.28	38.85
Merged-chr17-50025328-3	chr17	50025258	50025458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165139.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	34.73	32.95	48.49	51.08	69.96	63.34	26.91	64.29	63.92	51.72	69.85	47.3
Merged-chr5-149247282-3	chr5	149247190	149247390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17714.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	52.49	48.29	74.16	70.38	49.5	44.53	57.13	71.5	63.14	50.71	67.33	42.6
Merged-chr7-127297327-3	chr7	127297230	127297430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253873, intron 1 of 30)	intron (NM_001253873, intron 1 of 30)	1070.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	54.92	60.37	43.35	27.35	72.41	130.45	62.12	51.17	90.28	97.41	86.93	25.37
Merged-chr13-113548153-3	chr13	113548058	113548258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45314.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	100.55	84.26	108.39	67.97	101.05	157.73	92.01	64.15	110.15	131.55	80.9	66.41
Merged-chr5-145191576-3	chr5	145191476	145191676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020582)	promoter-TSS (NM_020582)	16.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	52.09	39.74	49.63	47.86	58.09	35.43	21.92	46.23	57.83	77.83	63.82	38.85
Merged-chr1-155083581-3	chr1	155083463	155083663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-299.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	104.18	110.17	112.95	112.21	131.32	145.5	103.64	104.92	178.99	189.29	232.15	125.62
Merged-chr9-21760416-3	chr9	21760351	21760551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026282)	promoter-TSS (NM_026282)	-148.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	39.17	37.73	37.65	33.78	58.09	62.09	48.5	63.65	54.88	64.77	69.85	23.81
Merged-chr13-23534946-2	chr13	23534835	23535035	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-483.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	15.75	6.29	11.41	4.02	12.68	6.59	2.99	11.58	20.85	18.58	27.13	6.27
Merged-chr10-80075456-3	chr10	80075328	80075528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	11.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	179.29	146.14	215.63	187.83	187.37	207.59	180.37	202.88	207.9	225.95	285.91	123.11
Merged-chr11-73047792-3	chr11	73047690	73047890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025818)	promoter-TSS (NM_025818)	-77.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	84.8	89.54	83.29	74.81	82.23	133.9	56.8	80.13	105.62	111.47	131.65	60.46
Merged-chr2-18976409-3	chr2	18976313	18976513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	21708.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	30.69	25.91	29.66	61.54	37.64	29.79	32.55	45.22	33.04	30.13	37.69	32.58
Merged-chr4-104949079-1	chr4	104948979	104949179	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104376, intron 3 of 20)	intron (NR_104376, intron 3 of 20)	35623.0	NM_001285952	242594.0	Mm.65181	NM_001162980	ENSMUSG00000078612	Fyb2	1700024P16Rik|ARAP|C1orf168|Gm620	FYN binding protein 2	protein-coding	4.85	0.5	3.99	5.23	1.23	12.54	3.99	16.01	3.54	1.0	4.02	2.82
Merged-chr14-66242916-3	chr14	66242824	66243024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-29100.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	24.23	18.61	21.68	16.89	28.64	21.01	20.26	34.04	33.04	31.13	31.15	17.54
Merged-chr9-54950682-3	chr9	54950550	54950750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011966)	promoter-TSS (NM_011966)	-209.0	NM_011966	26441.0	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	93.28	73.7	96.98	86.47	123.55	128.56	78.72	105.17	156.37	117.49	213.05	70.48
Merged-chr14-17479105-1	chr14	17479005	17479205	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-181855.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.42	0.25	0.0	0.0	5.32	3.14	5.98	11.07	7.28	7.03	4.52	5.01
Merged-chr14-20388928-3	chr14	20388819	20389019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134081)	promoter-TSS (NM_134081)	-9.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	88.03	67.91	110.67	89.29	83.46	98.46	74.07	89.52	118.6	115.99	85.42	66.73
Merged-chr13-100449657-3	chr13	100449558	100449758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008670, intron 1 of 15)	Lx8|LINE|L1	3206.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	40.38	34.71	38.22	51.88	20.86	44.53	43.85	29.05	54.09	49.21	70.35	68.92
Merged-chr2-117080549-3	chr2	117080453	117080653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40518.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	37.55	36.22	42.21	16.89	61.37	77.77	61.12	21.34	61.96	67.78	51.76	27.25
Merged-chr16-21793495-3	chr16	21793409	21793609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-838.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	38.76	25.15	48.49	33.78	41.32	45.15	35.87	35.02	31.47	30.63	39.7	21.62
Merged-chr7-4445638-3	chr7	4445505	4445705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290409)	promoter-TSS (NM_001290409)	52.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	33.92	33.7	25.67	40.62	34.36	35.43	36.87	43.65	39.53	37.66	35.68	35.4
Merged-chr7-73537889-3	chr7	73537786	73537986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	CpG	3860.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	276.2	288.5	289.22	278.72	314.19	359.98	281.35	245.41	370.95	416.75	380.38	236.52
Merged-chr13-65112134-3	chr13	65112055	65112255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	827.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	73.09	46.03	60.47	74.0	51.55	64.91	44.18	65.66	46.62	39.67	63.82	35.71
Merged-chr4-33265447-3	chr4	33265360	33265560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-16673.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	29.48	30.18	66.74	32.18	28.23	19.44	24.58	39.28	53.3	26.61	59.8	42.29
Merged-chr19-46503425-3	chr19	46503333	46503533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	UCON4|Unknown|Unknown	1785.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	28.67	18.61	35.37	14.08	23.32	25.09	30.23	27.17	33.04	31.63	25.63	19.42
Merged-chr6-143167165-3	chr6	143167066	143167266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029250)	promoter-TSS (NM_029250)	-64.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	160.71	127.02	155.73	159.27	153.41	185.01	137.19	198.25	186.26	178.25	267.82	109.33
Merged-chr13-80883341-3	chr13	80883224	80883424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153410)	promoter-TSS (NR_153410)	-60.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	85.6	82.5	84.43	88.89	98.59	81.22	60.46	70.93	130.4	94.4	123.11	72.68
Merged-chr14-102924836-3	chr14	102924756	102924956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57776.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	66.22	35.97	72.45	82.85	49.91	54.88	55.47	101.33	64.12	46.19	128.13	51.38
Merged-chr5-32714057-3	chr5	32714009	32714209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32233.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	107.81	80.74	77.58	97.73	93.28	116.02	69.76	60.7	106.21	128.54	83.41	66.41
Merged-chr14-25747671-3	chr14	25747528	25747728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21228.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	21.8	31.94	34.8	37.81	38.05	43.27	39.2	49.07	31.27	19.08	45.73	26.63
Merged-chr11-79223624-3	chr11	79223525	79223725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19399.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	93.28	62.88	55.9	49.07	78.14	98.78	47.83	52.15	103.26	82.85	98.49	54.82
Merged-chr3-106553582-3	chr3	106553485	106553685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-5783.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	49.67	45.53	111.81	62.34	69.55	59.89	48.5	80.08	65.69	61.26	73.86	38.85
Merged-chr10-17383149-3	chr10	17383040	17383240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-287358.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	36.34	28.93	27.95	26.55	38.46	35.43	26.57	26.52	40.52	28.12	38.69	15.98
Merged-chr17-34972673-2	chr17	34972560	34972760	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-43.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	34.73	42.51	23.39	34.99	49.91	55.82	22.92	30.11	57.83	61.26	66.83	34.15
Merged-chr18-46179440-3	chr18	46179338	46179538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178872, intron 4 of 9)	intron (NM_178872, intron 4 of 9)	19380.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	34.32	42.76	53.62	63.95	33.96	29.79	39.86	57.2	59.99	51.72	123.61	42.92
Merged-chr11-76763615-3	chr11	76763506	76763706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	-28.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	52.09	37.98	41.07	38.61	67.91	49.86	16.61	37.51	64.91	53.73	71.35	20.68
Merged-chr7-118277643-3	chr7	118277526	118277726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33719.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	76.72	70.18	78.72	70.79	77.32	85.61	40.19	79.01	102.08	94.4	83.41	57.01
Merged-chr13-34994209-3	chr13	34994104	34994304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-60.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	49.26	52.32	33.66	39.82	88.78	60.21	40.86	49.26	65.1	78.33	86.93	52.63
Merged-chr3-122294061-3	chr3	122293949	122294149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030439)	promoter-TSS (NR_030439)	-346.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	26.25	21.63	11.98	30.97	33.55	31.67	29.23	23.64	43.27	35.65	32.66	26.94
Merged-chr19-24284387-3	chr19	24284302	24284502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-3816.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	50.88	62.63	48.49	47.86	20.05	43.9	34.55	30.62	52.71	40.67	74.87	28.19
Merged-chr14-33447294-3	chr14	33447188	33447388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-130.0	NM_016700	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	173.63	175.57	163.15	147.21	182.05	219.5	176.71	152.22	280.08	262.1	329.13	130.01
Merged-chr10-44632143-1	chr10	44632043	44632243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-173395.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.63	5.53	6.28	4.83	15.55	3.76	5.31	11.44	7.08	7.53	9.04	3.13
Merged-chr11-20159154-3	chr11	20159035	20159235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42277.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	16.56	11.57	20.54	34.19	36.0	22.26	28.9	47.22	27.73	28.62	51.76	27.25
Merged-chr1-172643809-3	chr1	172643684	172643884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-10810.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	85.2	80.99	94.13	46.66	57.68	136.72	43.18	52.43	117.82	138.08	123.11	54.82
Merged-chr10-53630104-3	chr10	53629976	53630176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	363.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	208.36	212.79	224.76	203.11	260.6	322.98	213.92	264.59	309.39	317.33	402.49	190.47
Merged-chr8-57589444-3	chr8	57589344	57589544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-62309.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	34.32	33.7	35.94	43.04	61.77	36.69	32.88	49.23	64.71	47.7	53.77	34.46
Merged-chr8-22476517-2	chr8	22476381	22476581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011394)	promoter-TSS (NM_011394)	-219.0	NM_011394	20516.0	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	18.57	19.62	22.82	26.55	24.96	13.8	25.91	20.97	15.14	17.07	25.12	14.41
Merged-chr19-4793994-3	chr19	4793893	4794093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	16.0	NM_001290124	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	122.75	125.76	128.92	129.91	140.32	169.64	112.27	102.76	160.89	153.64	153.76	79.26
Merged-chr15-74918626-3	chr15	74918517	74918717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36434.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	26.25	25.66	45.07	26.14	15.96	18.5	11.63	10.85	56.84	39.16	50.25	22.56
Merged-chr11-5838020-3	chr11	5837932	5838132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017401)	promoter-TSS (NM_017401)	-16.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	115.89	118.97	81.58	84.46	141.14	188.14	93.01	99.81	142.21	130.05	171.35	74.24
Merged-chr11-116424248-3	chr11	116424149	116424349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9845.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	99.33	83.51	115.8	72.8	91.64	95.95	53.48	83.05	126.67	80.84	102.51	52.63
Merged-chr18-5334927-3	chr18	5334821	5335021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	-114.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	148.6	125.26	123.79	121.46	144.82	189.4	92.01	142.94	142.21	167.2	190.44	93.67
Merged-chr6-99435359-3	chr6	99435257	99435457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053202)	promoter-TSS (NM_053202)	-12.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	20.59	17.36	39.93	49.07	63.41	44.21	61.12	59.19	16.72	25.61	34.17	20.36
Merged-chr4-55623588-3	chr4	55623496	55623696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91121.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	111.45	114.7	130.06	103.77	151.78	193.47	115.93	142.12	136.5	135.57	161.3	77.69
Merged-chr3-149326888-3	chr3	149326784	149326984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52147.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	50.47	47.29	55.33	58.32	65.87	70.24	72.41	80.24	85.95	69.29	83.41	41.04
Merged-chr8-83608117-3	chr8	83608048	83608248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-27.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	218.45	191.41	204.22	162.49	243.83	260.89	160.11	194.92	237.4	286.7	289.43	178.88
Merged-chr2-165326568-3	chr2	165326462	165326662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207706)	promoter-TSS (NM_207706)	-83.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	149.81	156.95	151.74	150.82	182.46	200.06	138.18	159.56	192.75	160.67	230.14	121.23
Merged-chr15-50698669-1	chr15	50698569	50698769	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190380.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.88	7.04	9.13	8.04	11.45	13.48	4.65	11.07	10.42	20.08	7.03	2.82
Merged-chr17-70992534-2	chr17	70992443	70992643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2027.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	44.01	32.95	19.97	36.2	38.86	40.76	30.56	28.23	7.08	8.54	9.55	5.64
Merged-chr13-101592535-3	chr13	101592438	101592638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100092.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	25.44	19.87	21.68	22.12	14.32	17.87	15.28	18.28	29.31	16.07	22.11	19.11
Merged-chr14-27355233-3	chr14	27355117	27355317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	L1MC4a|LINE|L1	-6172.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	37.55	47.54	33.66	16.89	59.32	92.19	40.52	26.83	87.92	79.33	47.23	22.24
Merged-chr1-191182485-3	chr1	191182388	191182588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	CpG	845.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	85.2	86.02	55.33	57.92	48.68	58.32	36.54	53.27	66.87	75.32	72.36	34.15
Merged-chr3-105825839-3	chr3	105825722	105825922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10255.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	77.12	56.09	75.3	73.2	67.91	81.53	75.4	92.02	99.52	84.35	107.03	81.76
Merged-chr5-148559623-3	chr5	148559547	148559747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-6859.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	12.11	17.36	11.98	25.74	10.64	15.37	21.92	11.72	17.7	28.12	25.63	20.36
Merged-chr3-105017604-3	chr3	105017489	105017689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	35364.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	54.11	27.42	82.72	67.17	56.05	82.47	57.47	54.45	39.14	32.13	58.29	26.0
Merged-chr6-142747401-3	chr6	142747298	142747498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9288.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	35.94	32.95	31.38	47.06	68.73	42.02	50.82	70.35	80.84	60.25	72.86	73.62
Merged-chr8-120716216-3	chr8	120716113	120716313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20145.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	100.14	83.51	111.24	106.58	120.28	108.18	97.66	129.73	126.08	133.56	183.41	80.2
Merged-chr2-77342131-3	chr2	77342015	77342215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61523.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	38.36	31.69	31.95	30.97	43.36	34.81	29.23	46.09	38.55	55.23	69.34	22.87
Merged-chr1-144242029-3	chr1	144241972	144242172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	7032.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	16.96	45.28	12.55	42.23	28.64	38.26	18.27	14.72	30.09	28.12	28.14	22.24
Merged-chr3-145924944-3	chr3	145924868	145925068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	CpG	706.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	28.27	30.43	33.66	17.29	24.96	43.59	25.58	27.25	51.93	40.17	70.85	31.95
Merged-chr14-103007945-3	chr14	103007835	103008035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	Lx10|LINE|L1	-25298.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	86.82	123.25	114.09	113.42	151.37	191.59	166.09	135.22	194.92	208.88	242.7	125.31
Merged-chr17-73952347-3	chr17	73952211	73952411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2115.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	10.9	33.2	23.39	17.29	37.64	32.3	24.91	25.29	22.03	24.6	28.14	11.9
Merged-chr5-72559639-4	chr5	72559437	72559637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 1 of 21)	CpG	108.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	17.36	24.9	17.11	24.53	17.18	34.49	27.24	19.07	29.5	47.2	27.64	16.29
Merged-chr11-54866477-4	chr11	54866296	54866496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008248)	promoter-TSS (NM_008248)	13.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	39.17	45.28	34.23	32.98	58.91	57.07	26.91	36.53	64.32	54.73	51.25	49.18
Merged-chr19-7039507-3	chr19	7039442	7039642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016737, intron 1 of 13)	CpG	484.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	20.59	11.07	5.7	20.91	20.86	23.2	15.61	7.12	23.21	28.62	26.13	19.42
Merged-chr11-17005745-3	chr11	17005608	17005808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	3010.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	16.96	20.63	16.54	21.72	19.64	15.68	15.28	17.3	19.67	25.11	19.6	21.3
Merged-chr7-125554606-3	chr7	125554515	125554715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	2333.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	20.59	29.68	32.52	21.32	35.18	28.54	26.91	27.31	35.8	45.69	61.81	32.89
Merged-chr4-136117253-3	chr4	136117138	136117338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26584.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	107.41	86.53	72.45	76.82	90.0	129.51	51.15	86.22	111.52	149.13	155.77	101.19
Merged-chr7-25181645-3	chr7	25181538	25181738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26569.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	30.69	27.92	27.38	24.94	40.91	29.79	14.62	25.91	41.7	29.12	46.73	18.17
Merged-chr3-97159260-1	chr3	97159160	97159360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_019800, exon 1 of 10)	exon (NM_019800, exon 1 of 10)	483.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	12.52	17.86	5.7	16.49	15.14	11.29	4.65	9.98	9.44	10.04	12.06	11.9
Merged-chr7-48881128-3	chr7	48881024	48881224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013368)	promoter-TSS (NM_001013368)	-83.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	119.52	109.67	89.56	129.11	157.5	176.54	77.73	135.28	171.71	175.23	257.27	99.93
Merged-chr11-20107877-3	chr11	20107780	20107980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5071.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	24.23	16.6	30.23	35.39	38.05	30.42	20.26	43.91	52.52	66.78	67.84	35.71
Merged-chr4-115847597-3	chr4	115847500	115847700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8402.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	94.08	110.67	129.49	139.97	117.82	141.11	87.69	99.25	130.01	156.66	117.58	104.63
Merged-chr3-152912402-3	chr3	152912328	152912528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69779.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	19.38	32.2	18.83	30.97	44.18	16.62	38.53	53.55	49.57	27.11	45.73	28.51
Merged-chr18-35662177-3	chr18	35662050	35662250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027733)	promoter-TSS (NM_027733)	36.0	NM_027733	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	27.46	30.94	11.98	21.32	22.5	32.61	39.2	28.43	32.45	33.14	48.24	25.06
Merged-chr5-114813943-3	chr5	114813818	114814018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027817)	promoter-TSS (NR_027817)	58.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	28.27	36.72	29.09	28.96	34.77	47.04	23.25	23.38	42.48	48.7	43.21	35.71
Merged-chr8-33646967-3	chr8	33646856	33647056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-4980.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	26.65	16.85	47.92	55.1	36.41	23.83	25.58	58.18	39.14	29.62	50.25	32.58
Merged-chr14-55585285-3	chr14	55585152	55585352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	2.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	25.44	25.66	26.81	43.84	43.77	32.93	28.9	35.13	40.32	20.59	43.72	22.56
Merged-chr9-104814906-3	chr9	104814785	104814985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	-238383.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	25.04	14.84	32.52	26.14	23.32	20.38	13.29	32.02	38.75	22.59	42.21	20.36
Merged-chr1-131019579-3	chr1	131019473	131019673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010548)	promoter-TSS (NM_010548)	-272.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	39.57	33.45	31.95	25.34	30.68	67.42	31.89	21.5	57.24	78.33	82.41	26.94
Merged-chr12-106030623-3	chr12	106030527	106030727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	20364.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	42.8	29.43	42.21	35.39	40.5	21.01	23.58	40.26	42.68	45.19	52.26	32.89
Merged-chr7-15945990-3	chr7	15945903	15946103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133831, exon 1 of 13)	exon (NM_133831, exon 1 of 13)	105.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	53.7	67.41	57.62	76.42	45.0	64.91	86.7	47.75	52.12	60.25	54.27	47.93
Merged-chr13-62964843-3	chr13	62964733	62964933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289924)	promoter-TSS (NM_001289924)	-60.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	73.89	71.43	64.46	75.21	100.64	73.06	53.81	73.68	110.74	109.46	140.19	95.23
Merged-chr6-145303801-3	chr6	145303707	145303907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53255.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	48.86	46.03	69.6	67.57	71.59	68.36	82.05	97.32	96.18	69.29	127.13	65.79
Merged-chr11-69795492-3	chr11	69795453	69795653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291104)	TTS (NM_001291104)	384.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	95.7	86.53	98.12	94.92	106.78	96.27	60.12	106.12	95.39	107.95	127.13	70.48
Merged-chr9-44379379-3	chr9	44379269	44379469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-121.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	164.75	133.56	143.76	143.99	178.37	199.43	104.97	113.36	250.78	257.08	246.72	133.14
Merged-chr17-84126332-3	chr17	84126238	84126438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47678.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	55.32	39.24	60.47	43.84	47.05	57.38	32.55	49.23	69.04	49.21	71.35	38.85
Merged-chr7-16842846-3	chr7	16842754	16842954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-48.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	39.98	41.25	40.5	50.68	56.87	74.0	49.16	54.76	56.06	64.27	88.44	39.78
Merged-chr11-58307090-3	chr11	58306989	58307189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182996)	promoter-TSS (NM_182996)	20.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	42.8	12.07	31.95	40.62	31.09	48.29	19.6	30.98	69.04	48.7	100.5	35.09
Merged-chr6-72380490-3	chr6	72380344	72380544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	24.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	40.38	39.99	36.51	39.82	38.86	39.2	48.16	38.69	53.5	56.74	52.26	38.85
Merged-chr2-93462521-3	chr2	93462411	93462611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-9.0	NM_007656	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	87.62	83.51	102.68	81.65	116.59	104.11	108.62	98.38	149.68	125.53	162.8	61.4
Merged-chr9-21235537-3	chr9	21235484	21235684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110307, intron 2 of 5)	intron (NM_001110307, intron 2 of 5)	3748.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	31.09	32.45	26.81	18.5	32.32	32.3	30.23	29.92	39.53	24.6	27.13	16.92
Merged-chr7-55969649-3	chr7	55969572	55969772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	B1_Mus2|SINE|Alu	7141.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	56.53	51.06	62.75	44.64	39.27	49.23	58.79	24.45	56.25	42.68	65.83	26.63
Merged-chr6-87809339-3	chr6	87809227	87809427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	430.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	115.49	105.39	122.08	128.7	88.37	116.96	93.67	100.49	96.57	101.93	94.97	73.3
Merged-chr5-110879812-3	chr5	110879691	110879891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	-12.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	14.94	18.61	15.97	9.65	27.82	28.54	10.96	28.26	38.94	48.2	48.74	28.19
Merged-chr8-105700677-3	chr8	105700590	105700790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286345)	promoter-TSS (NM_001286345)	-458.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	26.65	22.39	22.25	19.31	27.41	24.46	15.28	26.02	31.27	38.16	36.68	16.29
Merged-chr15-82338030-3	chr15	82337914	82338114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355546, intron 2 of 8)	intron (NM_001355546, intron 2 of 8)	812.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	29.07	23.9	17.11	18.1	27.82	23.52	13.62	25.71	39.14	25.11	21.61	20.68
Merged-chr15-59721188-3	chr15	59721091	59721291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72537.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	15.34	15.09	19.97	10.46	18.82	27.59	15.94	26.58	24.39	39.67	28.14	23.81
Merged-chr14-63132495-3	chr14	63132393	63132593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	10031.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	58.95	52.57	71.88	64.35	132.96	143.62	102.64	121.09	111.33	115.48	91.95	56.7
Merged-chr7-102018286-3	chr7	102018197	102018397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-142.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	39.57	25.15	51.91	38.61	54.0	79.33	57.8	53.52	68.84	49.71	93.46	30.7
Merged-chr3-136426769-3	chr3	136426650	136426850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22599.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	71.88	51.81	91.27	100.15	94.09	80.27	80.72	107.55	92.44	95.4	119.59	60.77
Merged-chrX-8090537-3	chrX	8090428	8090628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009515)	promoter-TSS (NM_009515)	-37.0	NM_009515	22376.0	Mm.4735	NM_009515	ENSMUSG00000031165	Was	U42471|Wasp	Wiskott-Aldrich syndrome	protein-coding	27.86	31.94	53.62	50.27	31.91	38.88	30.89	47.58	36.39	47.7	64.32	39.78
Merged-chr8-43443075-2	chr8	43442976	43443176	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85061.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	6.86	2.52	2.28	2.82	41.32	28.22	36.54	47.22	47.8	32.64	62.31	33.21
Merged-chr1-80452215-3	chr1	80452109	80452309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	L2|LINE|L2	6277.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	18.57	21.38	28.52	18.5	18.82	13.17	33.55	35.75	22.62	24.6	35.17	22.56
Merged-chr6-40471415-3	chr6	40471306	40471506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286664)	promoter-TSS (NM_001286664)	-9.0	NM_212468	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	107.41	108.66	86.71	98.94	106.78	138.6	79.06	102.11	137.29	124.52	151.75	71.42
Merged-chr6-85380682-3	chr6	85380598	85380798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6064.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	69.86	48.04	75.3	63.95	71.59	95.64	43.18	89.13	85.76	93.89	94.47	49.18
Merged-chr15-38650977-3	chr15	38650871	38651071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10933.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	17.77	8.05	16.54	20.51	28.64	20.38	23.58	37.29	28.13	15.57	33.67	21.3
Merged-chr9-32118076-1	chr9	32117976	32118176	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195632, intron 1 of 21)	intron (NM_001195632, intron 1 of 21)	1940.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	7.67	4.78	6.85	9.65	4.91	5.64	9.63	16.35	8.85	12.55	11.05	4.39
Merged-chr19-23141636-2	chr19	23141546	23141746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010638, exon 1 of 2)	5' UTR (NM_010638, exon 1 of 2)	420.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	15.34	18.86	10.27	20.11	23.32	20.7	22.26	18.76	22.03	18.08	14.07	17.86
Merged-chr5-136170712-3	chr5	136170611	136170811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178751)	promoter-TSS (NM_178751)	-55.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	39.57	34.46	26.24	17.7	31.5	57.07	28.9	20.94	54.88	42.18	42.71	21.62
Merged-chr18-77944877-3	chr18	77944788	77944988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 1 of 43)	L1MC4a|LINE|L1	6421.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	23.02	27.42	41.64	15.69	26.59	24.77	18.93	18.53	34.42	36.15	55.78	17.86
Merged-chr4-32588430-3	chr4	32588339	32588539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	13943.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	33.92	29.68	31.38	34.19	45.0	37.63	39.86	75.93	84.97	51.21	75.37	48.24
Merged-chr12-59219916-3	chr12	59219823	59220023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-440.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	160.31	145.38	156.88	160.08	189.01	235.81	170.07	206.52	198.65	219.42	249.23	137.21
Merged-chr2-18975469-1	chr2	18975369	18975569	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	22652.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	5.65	7.04	9.13	14.48	4.5	2.51	9.3	13.82	6.69	5.52	6.53	8.46
Merged-chr11-51921930-3	chr11	51921833	51922033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-45698.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	33.92	35.47	21.11	38.21	63.41	64.6	37.2	60.03	76.91	69.79	96.48	48.24
Merged-chr19-7056739-3	chr19	7056617	7056817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134147)	promoter-TSS (NM_134147)	-51.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	25.84	17.61	20.54	22.93	27.0	30.42	15.94	21.11	38.75	24.6	41.71	23.81
Merged-chr7-118712512-3	chr7	118712416	118712616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360794)	promoter-TSS (NM_001360794)	-27.0	NM_001360794	101565.0	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110	centriolar coiled coil protein 110	protein-coding	86.01	106.4	111.24	98.94	106.78	121.98	79.06	115.23	157.55	148.12	172.35	87.71
Merged-chr15-95828207-3	chr15	95828116	95828316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1856.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	100.95	111.18	144.9	111.01	63.0	55.19	59.79	80.86	68.84	76.82	67.33	56.39
Merged-chr13-110798408-3	chr13	110798279	110798479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105120.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	30.28	25.15	18.25	16.09	10.23	11.29	16.61	19.21	39.34	29.12	27.13	13.16
Merged-chr8-120686260-3	chr8	120686162	120686362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17942.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	100.14	64.64	151.74	126.69	155.05	137.97	178.71	194.02	134.73	162.18	209.54	121.86
Merged-chr4-34687328-3	chr4	34687233	34687433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011895, exon 1 of 8)	5' UTR (NM_011895, exon 1 of 8)	105.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	96.51	109.67	73.59	121.46	90.82	114.14	104.3	117.73	103.46	112.97	145.22	72.36
Merged-chr5-44052724-2	chr5	44052624	44052824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	42044.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	19.79	13.83	16.54	30.97	2.86	2.82	6.64	4.15	26.16	10.04	36.68	28.19
Merged-chr9-65575994-3	chr9	65575892	65576092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	4095.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	54.11	36.47	55.33	43.84	51.96	50.8	34.21	55.32	54.88	42.18	65.32	56.07
Merged-chr9-96716021-1	chr9	96715921	96716121	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	3424.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.4	2.52	3.42	2.82	3.27	3.14	10.3	8.94	2.56	4.02	3.01	5.33
Merged-chr8-4779616-3	chr8	4779526	4779726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-59.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	43.21	48.04	54.76	50.68	59.73	70.24	57.13	77.72	87.33	79.83	113.06	41.66
Merged-chr6-92199625-2	chr6	92199521	92199721	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030081, intron 7 of 11)	intron (NM_030081, intron 7 of 11)	15190.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	8.88	3.52	6.28	5.23	34.36	22.58	14.62	26.47	30.88	43.18	28.14	24.75
Merged-chr2-180710115-3	chr2	180710021	180710221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177852)	promoter-TSS (NM_177852)	-105.0	NM_001289652	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	110.64	91.56	72.45	110.6	96.96	123.55	70.75	88.99	139.85	134.06	117.58	79.57
Merged-chr11-113752489-3	chr11	113752382	113752582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163346)	promoter-TSS (NM_001163346)	-667.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	25.44	17.1	14.26	18.9	32.32	55.5	25.24	23.07	45.63	24.1	33.67	29.76
Merged-chr17-56183935-3	chr17	56183818	56184018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080837)	promoter-TSS (NM_080837)	2.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	83.99	66.4	78.15	55.1	83.46	98.46	37.87	59.8	95.0	81.34	105.02	57.33
Merged-chr6-42929209-3	chr6	42929112	42929312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	1979.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	21.4	30.43	31.95	44.64	31.09	50.8	29.23	23.3	57.83	42.18	47.74	21.93
Merged-chr18-65495979-3	chr18	65495897	65496097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	65000.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	43.61	52.07	51.91	54.3	44.59	93.44	64.77	44.64	33.24	35.65	26.63	4.7
Merged-chr1-169969321-3	chr1	169969214	169969414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040438)	promoter-TSS (NR_040438)	-95.0	NR_040438	67303.0	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	142.94	136.83	144.9	144.39	195.55	278.77	169.74	232.49	200.82	174.23	318.57	115.6
Merged-chr8-78626830-3	chr8	78626745	78626945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	117517.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	22.21	14.84	29.09	17.29	42.14	31.67	40.19	46.79	30.29	30.13	35.17	26.0
Merged-chr14-54254000-3	chr14	54253911	54254111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-82.0	NM_010015	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	250.76	250.77	238.45	226.04	263.05	303.54	214.58	210.17	287.56	280.17	333.15	173.24
Merged-chr17-59021056-3	chr17	59020945	59021145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_145521, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-7723.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	31.09	19.12	27.38	35.8	20.46	24.77	43.85	39.79	47.01	31.63	58.29	42.92
Merged-chr7-142403829-3	chr7	142403738	142403938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15968.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	111.45	86.78	132.35	128.7	119.46	126.37	105.63	163.43	131.39	98.91	162.8	114.34
Merged-chr14-102903049-3	chr14	102902961	102903161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79571.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	17.77	13.33	26.81	28.15	16.77	15.68	28.9	38.97	24.39	20.59	21.1	30.7
Merged-chr15-66577533-3	chr15	66577434	66577634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081409)	promoter-TSS (NM_001081409)	-38.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	67.84	61.88	91.84	56.71	87.14	110.38	44.84	95.89	137.68	144.1	153.76	68.61
Merged-chr8-57511739-3	chr8	57511615	57511815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008252)	promoter-TSS (NM_008252)	-128.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	353.32	282.72	340.56	359.57	434.06	493.56	421.52	511.1	423.86	390.14	543.18	247.79
Merged-chr7-118533207-6	chr7	118533101	118533301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001304758, exon 1 of 7)	exon (NM_001304758, exon 1 of 7)	155.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	43.61	38.74	36.51	47.06	28.64	42.96	46.84	38.58	56.25	82.85	55.78	52.0
Merged-chr16-73875166-3	chr16	73875050	73875250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	466917.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	17.77	20.88	50.77	67.17	74.87	67.73	90.68	129.53	95.39	81.84	152.75	80.51
Merged-chr4-148444721-3	chr4	148444608	148444808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027873)	promoter-TSS (NM_027873)	43.0	NM_027873	71707.0	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	25.84	41.25	28.52	25.34	30.68	38.88	36.87	18.45	37.37	35.15	46.73	25.69
Merged-chr8-85083244-3	chr8	85083144	85083344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-25.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	65.01	62.13	105.53	69.98	92.46	91.56	63.44	91.71	97.95	97.91	128.13	62.97
Merged-chr2-11598473-3	chr2	11598370	11598570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 2 of 11)	ID_B1|SINE|B4	4729.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	30.28	22.64	33.66	25.74	20.46	31.67	32.22	43.63	41.5	36.15	61.81	27.25
Merged-chr19-6858237-3	chr19	6858147	6858347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-36.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	33.11	32.45	15.97	22.12	32.73	67.73	22.59	21.76	54.68	42.68	52.76	29.45
Merged-chr5-111330665-3	chr5	111330593	111330793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-4.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	110.64	114.19	94.7	104.57	94.91	121.35	84.37	76.26	168.76	191.3	215.06	103.38
Merged-chr2-166493110-3	chr2	166493029	166493229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45678.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	75.11	85.27	81.0	78.43	105.96	120.1	68.1	81.87	160.3	110.97	177.88	108.08
Merged-chr15-67176965-3	chr15	67176921	67177121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-139.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	164.75	149.41	186.54	179.78	146.46	173.09	132.87	172.23	112.51	116.49	154.76	90.85
Merged-chr18-56709015-3	chr18	56708914	56709114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	CpG	1201.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	90.05	103.13	94.7	102.16	94.91	127.0	102.31	130.49	144.17	110.46	213.56	95.23
Merged-chr19-3389330-3	chr19	3389238	3389438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286557)	promoter-TSS (NM_001286557)	-40.0	NM_001286557	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	101.35	114.45	108.39	111.01	123.96	158.98	87.69	99.36	96.77	124.52	149.24	72.68
Merged-chr10-29361357-3	chr10	29361257	29361457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110198, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1085.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	53.3	46.53	39.93	31.77	63.41	58.32	49.16	58.18	85.76	73.81	92.96	49.81
Merged-chr2-28641121-5	chr2	28641045	28641245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-88.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	22.21	16.6	12.55	12.07	13.91	21.32	14.95	11.19	22.82	27.62	14.57	16.6
Merged-chr11-32563809-3	chr11	32563701	32563901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	30535.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	72.28	41.75	41.07	43.84	76.09	82.78	64.11	94.77	75.92	68.29	69.85	44.48
Merged-chr6-38710620-3	chr6	38710509	38710709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47540.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	69.86	50.81	83.29	69.98	84.68	89.05	60.12	84.36	105.03	68.79	111.05	59.21
Merged-chr7-140956002-3	chr7	140955898	140956098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-37.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	32.71	18.11	27.38	18.9	33.96	32.93	21.26	24.84	35.99	29.12	57.79	20.99
Merged-chr2-91485046-4	chr2	91484960	91485160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 16 of 37)	L1_Rod|LINE|L1	27529.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	13.73	21.88	14.26	16.89	15.14	19.13	24.58	21.81	42.48	26.61	33.16	24.12
Merged-chr7-71832347-2	chr7	71832247	71832447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77348.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	33.92	29.18	45.07	38.21	70.77	53.62	34.21	73.21	9.83	3.01	13.06	6.27
Merged-chrX-157492137-3	chrX	157492029	157492229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359185)	promoter-TSS (NM_001359185)	158.0	NM_009214	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	23.82	27.92	42.78	32.18	42.55	49.23	40.86	46.21	47.4	44.19	52.26	24.12
Merged-chr8-72272910-1	chr8	72272810	72273010	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32892.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	8.48	3.52	3.99	10.46	15.96	35.75	14.62	11.72	7.87	12.05	10.55	7.21
Merged-chr1-121431077-3	chr1	121430945	121431145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-22.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	84.39	119.73	154.02	105.78	116.59	137.66	67.76	119.97	128.63	151.13	157.28	79.57
Merged-chr10-40348737-3	chr10	40348639	40348839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-569.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	130.02	126.27	159.73	150.82	138.28	119.78	101.64	135.93	170.73	171.72	151.25	95.86
Merged-chr5-120526434-3	chr5	120526346	120526546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	15254.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	17.36	12.07	26.81	23.33	12.27	28.85	18.93	28.37	46.03	21.09	21.1	15.98
Merged-chr6-34619688-3	chr6	34619603	34619803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	21199.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	35.53	22.13	29.66	25.74	31.09	31.98	28.9	34.65	68.25	51.72	56.28	46.36
Merged-chr10-80569881-3	chr10	80569785	80569985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	7411.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	54.92	32.95	42.21	45.85	41.32	72.44	23.92	44.27	56.84	51.72	66.33	41.66
Merged-chr13-22043129-3	chr13	22043092	22043292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-38.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	115.89	105.64	105.53	123.48	108.0	144.56	92.01	102.9	113.88	86.86	117.08	77.38
Merged-chr13-110563057-2	chr13	110562955	110563155	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168011.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.86	4.02	1.14	1.61	11.45	19.13	4.98	3.28	26.55	26.61	8.04	5.64
Merged-chr19-21272177-3	chr19	21272068	21272268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-110.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	260.45	303.34	250.43	291.19	329.33	343.36	333.17	256.32	391.02	397.17	411.03	207.07
Merged-chr2-147013423-2	chr2	147013285	147013485	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	CpG	386.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	21.0	38.99	23.39	19.31	25.36	37.0	27.9	25.51	48.98	45.69	69.34	26.31
Merged-chr8-14873956-3	chr8	14873857	14874057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14579.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	18.17	13.33	26.24	37.81	33.14	26.97	45.51	67.29	28.13	20.08	41.2	17.86
Merged-chr9-121330247-3	chr9	121330152	121330352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	B4|SINE|B4	32750.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	29.07	24.15	37.08	54.7	34.36	29.48	49.49	53.83	31.67	23.1	47.74	33.52
Merged-chr16-33591888-3	chr16	33591809	33592009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	73314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	38.36	18.36	39.36	46.66	45.0	44.84	31.56	58.04	41.3	43.18	74.87	33.83
Merged-chr6-120039827-3	chr6	120039718	120039918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	26.65	36.72	23.39	30.16	43.77	40.76	25.58	32.75	50.55	42.18	39.19	20.05
Merged-chr11-115692174-3	chr11	115692061	115692261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	7373.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	21.4	32.2	61.61	37.0	48.68	62.71	31.22	57.0	56.65	41.67	68.84	38.85
Merged-chr2-20894369-3	chr2	20894267	20894467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 3 of 24)	MTD|LTR|ERVL-MaLR	73354.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	30.28	29.18	24.53	10.05	27.41	56.76	18.93	37.82	51.34	33.64	35.17	20.36
Merged-chr7-90476087-3	chr7	90475989	90476189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-94.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	218.05	206.25	220.2	211.15	230.73	249.92	204.29	273.84	290.31	249.04	333.15	136.58
Merged-chr1-64118381-3	chr1	64118277	64118477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	3012.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	21.4	19.37	19.4	4.42	47.05	81.84	52.48	36.25	35.6	51.21	38.19	21.93
Merged-chr14-59201126-3	chr14	59201030	59201230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360611)	promoter-TSS (NM_001360611)	-98.0	NM_027764	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	81.16	95.33	108.39	89.29	117.41	99.4	91.68	121.09	106.8	114.48	117.58	74.56
Merged-chr3-89863870-3	chr3	89863786	89863986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32516.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	21.4	35.47	49.06	49.87	60.55	61.77	43.51	62.78	44.25	48.2	56.28	27.88
Merged-chr9-99180508-3	chr9	99180433	99180633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40322.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	23.82	23.39	55.33	31.37	50.32	42.33	39.2	59.02	53.11	30.63	57.79	30.07
Merged-chr7-137411079-3	chr7	137410947	137411147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-291.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	56.13	41.5	65.03	38.21	82.64	71.49	40.86	65.8	84.38	96.91	136.17	70.17
Merged-chr14-76110847-3	chr14	76110764	76110964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	-27.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	111.85	97.59	106.68	115.43	108.82	149.26	92.34	125.8	173.48	170.21	163.81	116.85
Merged-chr5-139294331-3	chr5	139294243	139294443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	31121.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	18.57	22.13	24.53	6.44	24.55	53.62	13.29	10.85	39.34	28.62	32.16	12.53
Merged-chr3-90231606-3	chr3	90231504	90231704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_206924)	promoter-TSS (NM_206924)	7.0	NM_206924	23922.0	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	54.92	53.58	50.77	69.98	77.32	74.63	40.52	54.2	65.89	90.88	76.38	61.4
Merged-chr7-92832619-3	chr7	92832512	92832712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029494, intron 4 of 4)	Lx6|LINE|L1	41635.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	17.36	13.83	29.66	18.9	47.46	39.2	46.17	56.8	35.8	24.6	35.68	19.42
Merged-chr2-91086516-3	chr2	91086414	91086614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10164.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	83.99	70.68	85.0	66.36	95.32	119.47	93.67	84.76	93.82	88.87	113.56	60.15
Merged-chr8-70865784-3	chr8	70865692	70865892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7698.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	107.01	78.98	46.21	58.32	103.5	134.84	60.79	65.5	115.46	161.18	137.68	86.15
Merged-chr6-116208089-3	chr6	116207996	116208196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	63.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	81.97	45.02	65.6	41.02	85.09	101.6	52.15	75.42	73.95	65.78	72.36	47.3
Merged-chr2-129593971-3	chr2	129593870	129594070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	801.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	22.21	20.12	16.54	26.55	25.36	42.02	25.58	25.12	40.91	39.67	38.19	21.3
Merged-chr8-64947201-3	chr8	64947135	64947335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	50.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	183.32	218.58	189.96	240.11	202.92	219.5	232.19	245.94	210.26	227.96	286.42	142.54
Merged-chr13-118420613-1	chr13	118420513	118420713	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-33361.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	2.42	1.01	0.57	0.8	2.45	3.76	0.66	3.42	43.47	21.59	63.31	18.48
Merged-chr1-155416937-2	chr1	155416843	155417043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	CpG	501.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	15.75	13.58	18.83	17.29	17.59	24.77	9.97	11.24	21.83	19.58	22.61	23.49
Merged-chr2-32138050-3	chr2	32137931	32138131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13117.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	146.98	109.16	142.61	115.03	150.55	182.81	78.06	127.88	174.46	176.74	160.79	108.08
Merged-chr18-77767802-3	chr18	77767692	77767892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146089)	promoter-TSS (NM_146089)	7.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	68.24	51.31	54.19	49.07	71.18	87.17	46.84	89.5	71.2	70.29	106.53	49.5
Merged-chr17-28420538-3	chr17	28420457	28420657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-55341.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	36.75	15.34	51.91	32.18	47.05	28.85	41.52	82.01	25.96	22.59	45.22	29.76
Merged-chr5-77013367-3	chr5	77013279	77013479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077218, intron 2 of 3)	intron (NR_077218, intron 2 of 3)	-2644.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	41.99	46.53	60.47	51.48	67.09	68.99	41.52	63.14	62.15	43.18	77.88	42.92
Merged-chr7-127016813-4	chr7	127016730	127016930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001102563)	TTS (NM_001102563)	522.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	14.13	18.11	20.54	12.47	22.91	21.01	9.97	15.98	22.82	30.63	25.63	27.57
Merged-chr7-99980367-3	chr7	99980176	99980376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175388, exon 1 of 6)	exon (NM_175388, exon 1 of 6)	182.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	16.56	14.34	14.83	24.13	4.5	10.98	17.27	9.48	13.37	15.57	22.11	10.65
Merged-chrX-10717404-3	chrX	10717312	10717512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166635)	promoter-TSS (NM_001166635)	47.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	41.99	51.81	38.22	54.3	64.64	100.66	30.89	65.16	76.31	108.96	141.7	49.18
Merged-chr17-79895444-3	chr17	79895292	79895492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357752, intron 1 of 13)	CpG	731.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	17.77	26.41	18.25	24.94	25.77	28.85	42.85	28.26	34.42	50.71	38.69	28.19
Merged-chr16-57280384-3	chr16	57280290	57280490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027651, intron 3 of 7)	intron (NM_027651, intron 3 of 7)	12461.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	26.25	20.12	47.35	36.2	34.77	21.64	32.88	49.63	58.81	34.14	68.84	26.31
Merged-chr6-91440924-3	chr6	91440796	91440996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	-42.0	NR_045980	75787.0	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	62.99	37.98	41.64	51.48	56.05	56.13	31.22	53.83	77.3	68.29	73.86	41.66
Merged-chr18-38185530-3	chr18	38185381	38185581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24281.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	24.63	25.66	49.63	35.8	31.09	31.98	21.92	29.78	30.49	37.16	53.26	25.06
Merged-chrX-49288311-3	chrX	49288186	49288386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145951)	promoter-TSS (NM_145951)	-44.0	NM_001271450	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	54.51	46.78	60.47	73.2	83.46	85.61	65.44	83.89	73.76	86.36	120.6	50.75
Merged-chr16-70385703-3	chr16	70385611	70385811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	71762.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	22.21	13.58	15.97	25.34	31.5	21.95	20.26	24.93	25.18	22.59	43.21	19.11
Merged-chr9-110525919-3	chr9	110525817	110526017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010628)	TTS (NM_010628)	-6680.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	35.94	36.47	38.22	25.34	32.32	44.53	30.23	49.77	40.12	57.24	62.31	37.59
Merged-chr17-73035405-3	chr17	73035275	73035475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72610.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	29.88	25.66	27.38	41.43	30.27	18.5	28.9	40.71	32.85	28.12	35.68	18.8
Merged-chr4-123026350-3	chr4	123026251	123026451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151450, intron 1 of 9)	intron (NR_151450, intron 1 of 9)	9758.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	31.5	19.62	39.36	44.24	18.82	27.28	21.59	26.58	31.08	18.08	41.2	17.23
Merged-chr16-3909038-3	chr16	3908960	3909160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	51.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	48.86	33.45	43.93	39.01	51.14	61.46	38.2	46.37	47.21	52.72	85.42	34.46
Merged-chr10-75504943-3	chr10	75504839	75505039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HERVL40-int|LTR|ERVL	12442.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	41.59	30.18	44.5	32.58	58.91	41.39	55.47	68.36	56.65	45.69	58.79	31.33
Merged-chr6-13677512-3	chr6	13677394	13677594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175312, intron 1 of 4)	CpG	472.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	23.02	28.42	18.25	49.07	22.09	43.27	47.5	33.2	41.5	33.64	51.76	29.76
Merged-chr4-57954672-3	chr4	57954568	57954768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	1743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	31.5	50.31	44.5	25.74	37.64	36.37	40.19	53.05	80.05	65.78	79.89	44.48
Merged-chr17-48185443-3	chr17	48185335	48185535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-18178.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	41.59	38.48	72.45	90.09	90.82	91.56	68.76	74.86	91.26	108.96	126.12	47.3
Merged-chr15-100674057-3	chr15	100673938	100674138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033612)	TTS (NM_033612)	-4538.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	54.51	27.17	40.5	57.11	23.73	26.34	40.86	75.5	25.77	16.57	34.67	40.72
Merged-chr6-117906787-3	chr6	117906689	117906889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	7.0	NM_133834	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	220.88	203.74	158.02	180.19	196.37	260.58	177.05	185.27	263.56	256.58	350.73	159.14
Merged-chr7-34193046-3	chr7	34192955	34193155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360710, exon 4 of 6)	exon (NM_001360710, exon 4 of 6)	3615.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	43.21	37.48	67.31	71.99	65.46	52.05	47.83	99.34	43.66	47.7	89.94	56.7
Merged-chr10-77581662-3	chr10	77581563	77581763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	8.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	130.43	137.84	131.21	107.79	162.41	179.99	103.64	122.36	164.04	167.2	193.96	111.84
Merged-chr2-26910711-3	chr2	26910633	26910833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-74.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	85.2	68.92	62.18	53.89	88.37	127.0	61.12	53.07	114.87	118.5	113.06	75.5
Merged-chr7-143038299-3	chr7	143038190	143038390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14460.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	26.25	19.62	27.38	22.12	17.59	18.19	20.26	25.46	33.44	19.58	44.72	16.29
Merged-chr19-40679170-3	chr19	40679062	40679262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	HAL1|LINE|L1	19392.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	62.99	46.78	102.68	86.07	78.96	68.67	90.68	114.93	79.27	51.72	148.23	57.64
Merged-chr14-61556898-3	chr14	61556809	61557009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-23.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	178.48	196.19	196.81	130.71	184.51	278.77	171.4	203.5	227.37	251.05	253.75	145.04
Merged-chr6-108448577-3	chr6	108448481	108448681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41162.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	64.61	46.78	60.47	50.27	70.77	81.53	65.44	84.45	68.25	84.86	117.08	73.3
Merged-chr7-107594050-3	chr7	107593952	107594152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-999.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	42.4	61.12	63.32	63.55	56.46	63.97	40.86	76.6	63.92	50.21	96.48	51.06
Merged-chr17-28523217-3	chr17	28523119	28523319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7642.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	25.04	26.16	26.24	18.1	42.14	43.59	16.28	30.22	20.65	36.15	29.14	21.3
Merged-chr7-120102363-3	chr7	120102269	120102469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145586)	promoter-TSS (NM_145586)	-57.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	66.63	48.04	63.32	83.26	95.73	93.44	72.08	113.83	89.69	87.37	137.68	55.13
Merged-chr3-35693213-3	chr3	35693109	35693309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-27046.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	51.28	66.15	53.05	81.65	38.86	38.57	34.55	48.76	38.75	46.19	60.3	37.28
Merged-chr9-115310577-3	chr9	115310502	115310702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-181.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	207.95	185.88	174.56	196.68	205.37	269.05	146.16	204.42	301.52	298.25	438.16	203.62
Merged-chr17-5195564-3	chr17	5195481	5195681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	35.94	38.74	38.22	30.16	58.91	76.2	39.86	48.95	44.84	38.66	63.31	23.81
Merged-chr10-94471640-3	chr10	94471507	94471707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-43250.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	73.49	57.35	111.81	117.04	82.64	90.94	103.97	143.8	95.39	57.74	141.2	86.46
Merged-chr5-99252934-3	chr5	99252841	99253041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145839)	promoter-TSS (NM_145839)	-14.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	202.3	198.2	147.18	151.23	190.23	220.44	184.35	148.71	287.16	271.64	304.5	169.79
Merged-chr8-56294576-3	chr8	56294474	56294674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	22.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	61.78	53.83	70.17	85.27	65.87	35.75	52.48	56.75	49.17	31.13	59.29	28.51
Merged-chrX-36598195-3	chrX	36598095	36598295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016783)	promoter-TSS (NM_016783)	2.0	NM_016783	53328.0	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema|mPR	progesterone receptor membrane component 1	protein-coding	60.57	37.23	57.62	46.25	61.37	50.8	29.56	55.96	67.27	72.3	84.42	43.54
Merged-chr11-3452374-3	chr11	3452266	3452466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028317)	promoter-TSS (NR_028317)	-71.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	121.14	134.06	156.88	109.8	126.0	167.45	81.38	126.95	177.02	152.14	183.91	97.74
Merged-chr13-37356771-3	chr13	37356673	37356873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	11428.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	35.53	20.88	31.38	43.84	31.5	36.69	18.6	37.93	37.37	40.67	33.67	23.81
Merged-chr2-163761591-3	chr2	163761487	163761687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11348.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	61.38	61.62	83.86	96.53	52.37	57.38	51.15	91.37	28.32	25.61	34.67	28.51
Merged-chr5-110770800-3	chr5	110770713	110770913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173066)	promoter-TSS (NM_173066)	-96.0	NM_173066	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	263.68	239.96	219.63	197.88	255.28	373.78	197.64	247.54	347.94	412.23	463.79	213.33
Merged-chr12-110602020-3	chr12	110601904	110602104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030238, intron 1 of 76)	CpG	609.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	21.0	12.32	25.1	14.08	13.91	17.25	23.58	19.46	21.64	16.07	39.7	20.99
Merged-chr7-143830162-3	chr7	143830069	143830269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7002.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	129.21	127.78	150.6	137.55	128.05	169.02	85.7	148.37	177.02	155.15	226.62	110.27
Merged-chr14-75179457-3	chr14	75179348	75179548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43023.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	40.78	20.88	23.96	23.33	26.59	52.05	33.55	28.91	43.86	44.69	55.27	34.46
Merged-chr3-51408977-3	chr3	51408894	51409094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025523)	promoter-TSS (NM_025523)	-39.0	NM_025523	66377.0	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	72.28	54.08	22.25	45.05	81.82	72.44	30.89	77.3	103.06	95.4	116.07	58.58
Merged-chr17-55945354-3	chr17	55945251	55945451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-92.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	36.34	30.43	51.91	33.38	49.91	54.25	40.19	31.23	55.66	69.29	62.31	45.74
Merged-chr18-57578533-3	chr18	57578430	57578630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-26133.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	25.04	17.86	12.55	19.71	30.68	26.97	23.58	23.02	39.73	32.13	55.78	17.23
Merged-chr4-129742432-3	chr4	129742325	129742525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-122.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	119.12	84.01	95.84	88.48	99.82	119.78	57.8	57.0	138.86	116.49	93.96	74.24
Merged-chr17-44436749-3	chr17	44436642	44436842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	248170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	19.38	37.48	53.05	23.33	33.96	22.26	11.96	23.64	45.24	20.08	43.21	19.11
Merged-chr15-58933765-3	chr15	58933669	58933869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	-39.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	73.49	75.21	53.62	57.51	78.14	98.15	51.82	79.88	81.04	81.34	116.58	44.8
Merged-chr7-16310206-3	chr7	16310113	16310313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 1 of 3)	CpG	630.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	73.89	79.73	68.45	59.12	58.09	92.5	65.77	63.42	80.25	89.88	117.08	50.12
Merged-chr15-76818197-3	chr15	76818107	76818307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-37.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	70.26	66.65	67.88	59.12	76.5	78.08	36.54	55.15	97.95	97.91	105.52	56.07
Merged-chr1-135633663-2	chr1	135633556	135633756	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35880.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	5.65	3.52	0.0	3.62	41.73	34.81	29.23	54.65	27.93	47.7	42.71	35.09
Merged-chr11-82045508-3	chr11	82045407	82045607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013654)	promoter-TSS (NM_013654)	-205.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	22.21	21.88	22.82	44.24	20.86	30.42	21.59	24.2	34.62	25.61	34.67	18.8
Merged-chr8-120436064-3	chr8	120435972	120436172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52794.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	59.76	56.09	110.1	51.88	84.68	91.88	80.72	84.42	92.25	37.66	77.38	38.22
Merged-chr8-107031285-3	chr8	107031194	107031394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_126165)	promoter-TSS (NM_126165)	-32.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	71.47	73.45	63.89	59.12	87.96	85.92	47.17	79.29	101.1	119.5	117.08	60.46
Merged-chr11-121673278-3	chr11	121673204	121673404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-153.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	257.22	245.49	241.3	261.43	251.19	292.25	186.35	209.05	282.64	292.73	340.68	150.05
Merged-chr13-91223989-3	chr13	91223877	91224077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	10.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	88.03	103.13	75.3	106.18	135.82	115.39	142.17	120.73	136.3	131.05	178.88	74.24
Merged-chr2-152756705-3	chr2	152756584	152756784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2511.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	40.78	17.61	38.79	47.86	33.14	25.4	25.58	50.92	31.27	32.64	47.74	19.42
Merged-chr16-44130657-3	chr16	44130568	44130768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	8591.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	20.19	12.83	16.54	20.11	27.41	38.88	32.22	63.87	45.43	22.09	44.22	47.62
Merged-chr16-15890137-3	chr16	15890021	15890221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007679)	TTS (NM_007679)	2835.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	33.92	34.21	33.66	69.58	29.46	35.43	28.9	45.06	39.93	25.61	36.18	25.37
Merged-chr4-155761145-3	chr4	155761026	155761226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_179203)	promoter-TSS (NM_179203)	-28.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	143.75	120.73	115.8	113.82	157.91	151.14	87.69	97.4	151.84	115.48	149.24	91.79
Merged-chrX-168673965-3	chrX	168673857	168674057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010832)	promoter-TSS (NM_010832)	-55.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	35.13	28.42	35.94	43.44	40.91	43.9	40.52	44.38	46.81	46.19	80.4	26.94
Merged-chr13-101659243-3	chr13	101659159	101659359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33371.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	25.44	13.58	33.09	24.53	16.36	33.55	12.95	19.68	41.11	38.16	55.78	21.93
Merged-chr17-46751618-3	chr17	46751519	46751719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	595.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	69.05	53.58	83.29	81.65	60.55	76.51	30.89	81.48	77.3	58.24	77.38	50.12
Merged-chr16-56037788-3	chr16	56037690	56037890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029092)	promoter-TSS (NM_029092)	-16.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	88.43	98.35	94.7	82.85	120.28	148.95	75.4	119.08	132.76	129.54	189.94	100.56
Merged-chr4-126556945-3	chr4	126556848	126557048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-32.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	31.5	36.22	32.52	28.96	32.32	39.2	25.24	33.34	37.76	42.18	56.28	25.69
Merged-chr13-110569265-3	chr13	110569134	110569334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174190.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	52.09	52.32	83.29	41.83	68.32	79.65	38.2	50.41	120.96	104.44	83.91	52.63
Merged-chr2-167988440-3	chr2	167988323	167988523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	22170.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	16.96	13.58	24.53	34.19	14.32	15.37	27.24	24.87	15.74	20.08	25.12	24.43
Merged-chr5-65765098-3	chr5	65765003	65765203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024917, intron 1 of 19)	intron (NM_001024917, intron 1 of 19)	1582.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	48.86	49.3	50.2	41.43	38.86	60.21	20.93	62.61	56.45	68.29	56.78	30.7
Merged-chr14-74732245-3	chr14	74732141	74732341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285423)	promoter-TSS (NM_001285423)	-56.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	88.43	63.64	81.0	88.08	106.37	88.43	68.43	87.53	92.64	84.35	131.65	62.03
Merged-chr18-57878660-4	chr18	57878582	57878782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	4.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	27.05	29.18	15.97	18.1	42.14	41.71	45.84	30.76	32.26	25.61	37.69	16.29
Merged-chr10-78352459-3	chr10	78352373	78352573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-773.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	28.67	23.39	26.24	18.9	37.64	28.85	18.6	30.39	22.42	27.62	44.72	16.29
Merged-chr18-46458421-3	chr18	46458320	46458520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7396.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	136.08	116.96	134.06	124.28	130.91	181.87	143.5	185.44	125.29	178.75	217.07	132.83
Merged-chr1-106231503-3	chr1	106231414	106231614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	Lx7|LINE|L1	59645.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	104.99	80.99	80.43	98.14	105.14	143.93	87.69	123.65	133.16	98.41	124.62	67.35
Merged-chr14-33213962-3	chr14	33213851	33214051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2872.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	24.23	11.82	25.1	24.53	17.18	29.48	13.29	21.67	36.58	36.15	56.28	26.31
Merged-chr7-98703572-1	chr7	98703472	98703672	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	325.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	6.06	13.08	5.13	5.23	12.68	18.19	16.61	10.77	9.83	7.03	14.57	10.02
Merged-chr3-15156903-3	chr3	15156810	15157010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175392.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	27.46	18.36	33.09	29.76	23.32	21.95	29.23	32.27	27.14	23.6	26.63	20.99
Merged-chr5-3501848-3	chr5	3501689	3501889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42044.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	109.02	85.52	81.0	70.38	152.6	178.74	121.24	118.57	168.96	137.07	140.19	72.36
Merged-chr2-174437883-3	chr2	174437781	174437981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1158.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	121.14	117.21	133.49	96.13	148.1	150.83	115.6	134.36	217.73	159.67	185.42	111.21
Merged-chr11-86579078-3	chr11	86578987	86579187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5071.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	137.69	128.03	151.17	168.92	147.28	137.03	108.62	128.33	168.17	141.59	176.37	121.23
Merged-chr19-47447022-3	chr19	47446946	47447146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	17365.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	28.27	32.2	47.92	41.83	32.32	39.51	37.2	39.42	24.0	14.56	29.14	17.23
Merged-chr10-39417805-3	chr10	39417720	39417920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48021.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	31.5	22.39	62.18	39.42	31.09	34.18	41.52	59.66	31.47	23.6	87.43	29.76
Merged-chr1-155028881-3	chr1	155028779	155028979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54385.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	40.38	32.7	25.1	18.1	21.27	32.93	19.93	30.28	34.22	28.12	37.18	22.87
Merged-chr4-150798990-3	chr4	150798891	150799091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54805.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	52.49	49.8	82.15	82.05	108.82	90.94	71.08	100.09	90.08	120.0	109.54	103.38
Merged-chr10-10558232-3	chr10	10558148	10558348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-41.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	180.09	201.73	207.08	252.98	213.96	247.41	178.71	307.68	252.15	182.26	301.49	143.79
Merged-chr11-60222964-3	chr11	60222882	60223082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358315)	promoter-TSS (NM_001358315)	-401.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	64.61	72.94	56.48	74.0	82.64	97.21	49.83	85.18	51.93	52.22	58.29	35.4
Merged-chrUn_JH584304-19200-1	chrUn_JH584304	19100	19300	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40489.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	27.34	41.17	23.62	31.64
Merged-chr7-13024325-3	chr7	13024226	13024426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011588, exon 1 of 17)	5' UTR (NM_011588, exon 1 of 17)	174.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	58.55	37.73	51.34	55.91	76.91	63.34	52.82	64.91	113.49	100.42	128.13	65.47
Merged-chr2-166662979-3	chr2	166662896	166663096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	50836.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	31.5	28.17	57.62	27.35	31.91	41.39	43.85	41.92	55.86	31.63	62.31	38.85
Merged-chr11-51938899-3	chr11	51938803	51939003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-28728.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	30.69	17.61	39.93	52.29	54.41	35.12	47.83	65.38	48.78	31.13	63.82	33.52
Merged-chr7-110614846-3	chr7	110614726	110614926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	94.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	29.48	33.45	18.83	24.94	30.68	38.88	32.88	20.69	18.88	36.65	34.17	13.78
Merged-chr17-24163779-3	chr17	24163674	24163874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-41.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	98.12	97.34	75.3	94.92	101.87	124.17	73.08	76.85	157.55	174.73	133.16	119.98
Merged-chr7-46999137-3	chr7	46999007	46999207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175318, intron 2 of 5)	intron (NM_175318, intron 2 of 5)	9307.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	37.55	42.01	49.06	47.06	27.0	39.82	25.58	37.77	52.12	51.21	58.29	36.97
Merged-chr4-55805484-3	chr4	55805401	55805601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-273026.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	42.4	42.76	54.19	73.2	35.18	27.91	20.26	45.81	37.76	26.11	45.73	36.34
Merged-chr2-117186297-1	chr2	117186197	117186397	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	1170.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.81	2.52	3.42	4.02	7.36	2.51	9.3	11.1	3.15	3.01	2.01	3.45
Merged-chr17-57280557-3	chr17	57280418	57280618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	1418.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	70.26	75.96	102.68	84.86	98.18	92.5	104.3	113.86	77.89	70.8	105.02	36.03
Merged-chr1-34005808-3	chr1	34005710	34005910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6015.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	31.09	23.9	25.1	43.04	29.05	25.4	23.58	33.08	25.96	30.63	39.7	22.87
Merged-chr5-72269749-3	chr5	72269664	72269864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66421.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	52.49	71.69	66.74	74.41	61.77	79.33	66.1	69.53	74.94	69.79	72.86	49.81
Merged-chr7-19750319-3	chr7	19750224	19750424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-751.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	25.04	22.89	42.21	31.37	24.55	42.02	21.59	35.1	49.17	52.22	54.27	32.58
Merged-chr13-99353321-3	chr13	99353221	99353421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8535.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	167.58	146.14	171.14	173.35	165.69	222.64	118.59	215.44	202.59	219.42	243.7	87.71
Merged-chr8-128506101-3	chr8	128506019	128506219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008737)	TTS (NM_008737)	146878.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	68.24	46.78	45.64	20.11	65.46	82.16	32.88	48.17	75.53	72.3	75.87	32.58
Merged-chr1-171849689-3	chr1	171849587	171849787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	9990.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	73.49	71.69	105.53	104.97	115.37	106.3	119.25	142.74	169.55	196.83	258.78	127.19
Merged-chr2-90478780-3	chr2	90478698	90478898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	376.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	47.24	33.2	62.18	47.06	57.27	57.38	43.51	54.17	30.49	29.12	64.82	35.09
Merged-chr1-151997779-3	chr1	151997677	151997877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	92543.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	37.55	30.94	44.5	35.8	45.82	37.0	29.23	44.3	55.27	25.11	44.72	23.49
Merged-chr13-62466805-3	chr13	62466722	62466922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136496)	promoter-TSS (NM_001136496)	-10.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	48.46	60.87	66.74	68.78	66.68	60.21	76.4	89.36	104.05	90.38	133.66	61.09
Merged-chr16-84834937-3	chr16	84834835	84835035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	41.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	140.52	152.17	175.7	159.67	201.28	167.13	143.17	172.74	219.31	223.94	272.85	121.86
Merged-chr4-53512636-3	chr4	53512530	53512730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 3 of 15)	L2b|LINE|L2	72217.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	18.17	14.59	22.25	22.52	53.18	65.54	58.79	52.37	28.72	32.13	33.16	17.23
Merged-chr8-108781374-3	chr8	108781278	108781478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66734.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	55.72	42.26	46.21	69.18	49.91	45.15	42.19	64.23	41.89	33.64	34.67	23.81
Merged-chr1-106818587-3	chr1	106818492	106818692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21867.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	34.73	29.93	40.5	26.95	22.09	25.71	22.92	11.52	30.09	31.63	29.65	19.74
Merged-chr8-46163660-3	chr8	46163560	46163760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357215)	promoter-TSS (NM_001357215)	9.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	96.1	83.76	82.72	100.55	101.46	95.95	60.79	100.51	109.75	87.37	129.14	57.01
Merged-chr13-103919402-3	chr13	103919306	103919506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1180.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	20.59	28.42	19.97	26.55	20.86	33.24	26.24	26.5	41.11	25.61	43.21	26.94
Merged-chr1-127868809-3	chr1	127868710	127868910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	37.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	45.23	45.28	42.78	45.85	52.77	55.5	45.84	48.48	56.06	63.27	66.83	33.52
Merged-chr10-63429583-3	chr10	63429484	63429684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-514.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	118.31	138.34	122.08	162.89	157.5	157.1	90.35	126.79	203.97	186.28	177.38	114.97
Merged-chr3-127790572-3	chr3	127790493	127790693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356430)	promoter-TSS (NM_001356430)	-64.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	39.57	43.01	38.79	32.18	45.0	70.24	27.9	34.91	32.26	35.65	38.69	10.96
Merged-chr2-132224484-3	chr2	132224379	132224579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23309.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	92.87	89.54	101.54	104.17	80.18	119.78	65.11	84.9	91.66	79.33	112.05	63.28
Merged-chr17-35969901-3	chr17	35969805	35970005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	-155.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	203.92	223.86	167.71	146.4	199.23	279.39	138.85	142.54	216.36	227.96	222.1	142.54
Merged-chr5-92279349-3	chr5	92279257	92279457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1176.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	81.97	66.91	110.67	87.68	36.0	41.71	28.57	52.21	106.8	90.38	124.62	72.68
Merged-chr8-70873610-5	chr8	70873502	70873702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-112.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	23.82	30.69	19.97	26.55	24.14	27.28	19.93	15.5	30.88	41.67	22.61	18.8
Merged-chr3-67557362-3	chr3	67557254	67557454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25414.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	163.13	180.85	217.34	216.38	177.96	254.62	151.14	229.51	278.31	300.26	289.93	154.13
Merged-chr8-70698900-3	chr8	70698828	70699028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1189.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	209.57	213.55	187.68	190.24	261.83	278.14	185.35	210.7	249.01	265.11	304.0	155.07
Merged-chr8-126846295-3	chr8	126846178	126846378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2742.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	39.98	37.48	40.5	23.33	40.09	42.65	31.56	49.01	54.68	40.67	56.28	33.21
Merged-chr13-94123072-1	chr13	94122972	94123172	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	65276.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	1.62	4.53	6.85	16.49	2.05	3.76	8.97	8.36	2.95	1.0	1.51	1.88
Merged-chr15-97880706-3	chr15	97880589	97880789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	27607.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	41.99	18.61	39.36	59.53	44.59	43.59	38.53	57.28	61.56	30.63	45.73	37.91
Merged-chr17-7868839-3	chr17	7868736	7868936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57164.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	30.69	28.17	14.83	33.78	28.64	33.55	13.95	33.39	35.8	39.16	46.23	16.6
Merged-chr5-146795044-3	chr5	146794921	146795121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-65.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	183.32	167.01	156.31	123.88	187.78	220.44	118.59	166.43	190.0	232.98	264.81	148.18
Merged-chr11-3290092-3	chr11	3290041	3290241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253691)	promoter-TSS (NM_001253691)	-316.0	NM_001253690	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	28.27	40.24	28.52	19.31	25.36	23.52	23.92	24.03	31.27	31.13	42.71	18.48
Merged-chr8-104111305-2	chr8	104111214	104111414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5441.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	32.71	31.44	32.52	39.01	19.23	58.95	48.5	44.22	56.84	40.67	82.41	32.27
Merged-chr19-10895175-3	chr19	10895081	10895281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253843)	promoter-TSS (NM_001253843)	-50.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	163.94	147.65	110.67	110.6	138.69	199.43	83.71	115.46	148.89	177.75	151.25	98.05
Merged-chr12-110591671-3	chr12	110591466	110591666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033340, exon 1 of 1)	non-coding (NR_033340, exon 1 of 1)	192.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	79.55	77.72	52.48	67.17	53.59	74.94	60.12	52.37	74.15	97.91	61.3	52.63
Merged-chr19-5088443-3	chr19	5088338	5088538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-100.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	153.04	141.11	172.85	146.0	150.14	180.62	108.62	127.51	177.41	172.22	142.71	113.09
Merged-chr4-101650567-3	chr4	101650467	101650667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	2784.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	34.32	20.63	25.1	10.86	36.82	33.87	14.28	33.31	29.11	47.7	30.15	17.86
Merged-chr15-64040950-3	chr15	64040853	64041053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	18811.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	74.3	48.54	92.41	87.28	99.82	136.4	94.34	118.63	97.95	103.43	108.03	65.16
Merged-chr6-135011583-3	chr6	135011490	135011690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026360)	promoter-TSS (NM_026360)	-22.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	56.94	55.59	58.76	74.81	94.09	87.49	54.14	82.04	95.2	74.81	110.55	64.22
Merged-chr11-8760070-3	chr11	8759985	8760185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-95550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	37.55	49.3	42.78	37.4	51.55	68.05	49.16	55.79	71.99	84.35	72.36	71.11
Merged-chr14-103785324-3	chr14	103785264	103785464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58337.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	22.61	25.91	23.39	33.78	45.0	42.65	45.18	58.74	27.93	26.61	39.19	27.25
Merged-chr3-95674385-3	chr3	95674290	95674490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13527.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	59.76	65.9	58.19	52.69	76.91	71.49	56.47	62.89	77.1	76.82	128.13	53.26
Merged-chr4-155732780-3	chr4	155732657	155732857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-2047.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	52.09	56.85	74.16	76.82	38.86	58.32	41.52	57.45	44.84	54.73	78.89	39.47
Merged-chr10-44268429-3	chr10	44268351	44268551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053069, exon 1 of 8)	5' UTR (NM_053069, exon 1 of 8)	112.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	165.15	171.04	157.45	192.25	135.82	207.27	133.2	152.97	204.16	234.99	261.29	143.16
Merged-chr7-141902501-3	chr7	141902412	141902612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347562)	promoter-TSS (NM_001347562)	-51.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	116.7	132.56	86.71	77.62	119.87	141.73	87.69	91.79	140.04	141.09	164.81	83.96
Merged-chr14-31596665-3	chr14	31596578	31596778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-19295.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	49.26	46.28	118.08	68.78	52.77	81.22	71.42	104.64	83.0	53.73	126.12	68.92
Merged-chr13-89740452-3	chr13	89740364	89740564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081249, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	2048.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	27.05	13.58	17.68	30.16	32.32	42.96	27.24	52.54	48.78	30.63	70.85	25.69
Merged-chr4-88864798-3	chr4	88864714	88864914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14727.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	31.09	26.41	34.23	26.14	40.09	39.82	28.57	36.11	42.29	36.65	46.73	27.57
Merged-chr11-83703884-3	chr11	83703766	83703966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-190.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	73.49	51.06	88.42	78.03	90.82	85.92	59.13	68.05	77.1	63.77	103.01	47.93
Merged-chr11-78497829-3	chr11	78497728	78497928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172795)	promoter-TSS (NM_172795)	-74.0	NM_172795	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	47.65	39.74	57.05	63.55	65.87	64.91	36.54	42.84	40.71	29.62	42.71	23.18
Merged-chr16-55551215-3	chr16	55551127	55551327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	56496.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	92.87	81.5	85.0	84.06	162.0	134.21	86.36	125.38	125.29	125.53	116.58	67.35
Merged-chr16-4790151-3	chr16	4790028	4790228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358080)	promoter-TSS (NM_001358080)	164.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	87.22	92.56	81.58	82.05	99.41	118.53	103.31	78.62	90.08	104.44	105.02	75.5
Merged-chrX-102119338-3	chrX	102119224	102119424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027181)	promoter-TSS (NM_027181)	-141.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	87.22	96.34	98.12	92.1	121.5	136.09	95.67	101.97	137.09	136.57	150.24	75.18
Merged-chrX-75416555-3	chrX	75416469	75416669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166457)	promoter-TSS (NM_001166457)	15.0	NM_010839	105886298.0	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	55.72	54.08	77.01	67.97	69.14	71.81	79.39	89.55	83.4	64.77	129.14	43.23
Merged-chr5-90700357-3	chr5	90700247	90700447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58951.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	62.99	41.0	67.88	91.3	80.59	69.61	80.72	101.36	75.53	62.76	88.94	47.62
Merged-chr9-50603914-3	chr9	50603820	50604020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	19.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	104.58	87.03	74.73	80.04	108.0	101.91	56.14	87.93	112.11	100.42	104.52	71.42
Merged-chr12-88360594-3	chr12	88360539	88360739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	125.0	NM_001361599	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	51.69	69.67	59.9	63.95	73.64	101.28	124.9	102.03	83.4	99.92	124.62	49.18
Merged-chr9-90274698-3	chr9	90274583	90274783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3914.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	121.14	130.79	152.88	139.16	121.5	183.13	134.2	156.06	193.34	181.76	234.16	125.31
Merged-chr13-118387262-3	chr13	118387162	118387362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-10.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	79.95	85.27	75.3	97.33	113.32	75.57	63.78	111.28	137.48	132.56	132.15	84.58
Merged-chr5-112265649-3	chr5	112265530	112265730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	9810.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	90.85	87.03	97.55	95.32	81.41	91.25	53.81	98.58	100.51	122.01	179.89	95.55
Merged-chr4-43454719-3	chr4	43454642	43454842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-116.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	10.9	26.91	17.11	21.32	12.68	19.13	17.27	17.58	21.64	14.56	34.17	10.34
Merged-chr3-121548253-3	chr3	121548153	121548353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15909.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	55.32	49.55	61.61	61.54	50.73	93.44	50.82	58.63	88.31	85.36	112.56	62.03
Merged-chr4-55532942-3	chr4	55532832	55533032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-457.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	94.89	97.84	115.8	126.29	124.37	128.25	129.88	134.3	136.89	165.19	202.5	111.21
Merged-chr7-29007421-3	chr7	29007335	29007535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 101 of 105)	intron (NM_009109, intron 101 of 105)	24581.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	27.05	31.19	46.21	52.29	43.77	33.87	32.88	66.03	29.5	22.59	32.66	28.51
Merged-chr1-184852464-3	chr1	184852385	184852585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6638.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	62.59	77.97	81.0	69.18	114.96	96.89	63.78	96.2	96.77	104.94	117.08	53.26
Merged-chr15-51920594-3	chr15	51920497	51920697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43156.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	37.15	32.45	51.91	41.83	37.23	50.49	36.54	54.48	54.68	35.15	52.76	23.81
Merged-chr5-32168651-3	chr5	32168576	32168776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32204.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	20.19	36.72	14.83	17.7	35.18	60.83	19.93	17.33	54.29	70.8	31.66	20.05
Merged-chr5-29861669-3	chr5	29861570	29861770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125734.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	22.21	18.61	31.95	30.97	25.77	45.15	24.25	29.47	34.22	32.13	53.77	26.31
Merged-chr10-75591726-3	chr10	75591620	75591820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	2339.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	50.47	55.59	91.84	107.79	81.41	76.83	49.83	96.59	77.1	45.69	99.49	60.15
Merged-chrX-36864248-3	chrX	36864143	36864343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029951)	promoter-TSS (NM_029951)	3.0	NM_029951	77644.0	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	37.15	24.9	18.25	16.09	26.18	32.3	13.95	14.52	35.8	36.65	32.66	23.81
Merged-chr10-88683090-3	chr10	88682979	88683179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-56.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	85.2	70.43	86.14	55.91	85.09	77.77	58.13	82.32	94.41	72.3	91.95	60.77
Merged-chr3-84582748-3	chr3	84582638	84582838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-113.0	NM_001081093	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	120.73	122.49	119.23	154.04	105.55	98.78	105.96	96.87	130.99	116.99	175.87	83.33
Merged-chr2-162932235-6	chr2	162932110	162932310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026499, intron 2 of 5)	CpG-8791	702.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	13.33	15.34	15.4	22.52	18.82	11.6	17.94	18.2	21.64	22.09	19.6	17.54
Merged-chr8-106500163-3	chr8	106500062	106500262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10690.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	108.62	114.95	156.88	124.28	148.5	150.83	82.71	128.8	135.32	117.99	118.08	91.47
Merged-chr15-83595162-3	chr15	83595064	83595264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183017)	promoter-TSS (NM_183017)	-7.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	75.51	34.46	54.76	47.86	44.18	64.91	38.53	41.8	53.89	61.26	62.31	46.99
Merged-chrX-7884377-3	chrX	7884284	7884484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_138606)	TTS (NM_138606)	140.0	NM_078484	22232.0	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	17.36	14.59	20.54	16.49	23.32	26.03	17.27	19.23	26.36	26.61	41.2	11.9
Merged-chr3-87408365-3	chr3	87408261	87408461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27421.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	23.82	18.86	19.97	19.71	29.05	27.91	19.6	22.29	42.88	22.09	28.14	19.42
Merged-chr18-82822048-3	chr18	82821948	82822148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33849.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	37.15	18.36	25.1	20.11	21.68	33.55	17.94	26.05	49.17	29.62	60.8	35.71
Merged-chr7-49046517-3	chr7	49046431	49046631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87458.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	37.55	23.39	34.8	32.18	38.05	26.34	33.55	58.29	43.47	23.6	52.76	36.65
Merged-chr6-120083162-3	chr6	120083068	120083268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10212.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	36.34	24.65	30.8	24.53	56.46	65.85	58.79	70.57	77.5	52.22	48.74	27.88
Merged-chr17-34761625-3	chr17	34761517	34761717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ETnERV2-int|LTR|ERVK	-17720.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	33.11	37.98	35.37	62.74	40.5	42.65	35.87	34.93	81.82	62.26	81.9	67.67
Merged-chr19-24432594-1	chr19	24432494	24432694	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	44880.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	1.62	0.5	0.0	0.4	2.86	1.25	0.66	2.5	28.72	21.09	31.15	15.66
Merged-chr8-104250890-3	chr8	104250781	104250981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	20.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	33.92	37.73	32.52	33.38	49.91	35.75	14.28	47.78	55.86	45.19	73.86	40.41
Merged-chr16-27399615-3	chr16	27399500	27399700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	10644.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	27.05	16.85	16.54	18.5	21.68	24.15	13.62	17.02	30.09	26.11	30.65	18.8
Merged-chr7-35065096-3	chr7	35064982	35065182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8516.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	59.36	40.75	76.44	58.32	87.96	71.81	45.51	69.84	94.02	73.81	95.97	56.07
Merged-chr10-121596729-3	chr10	121596580	121596780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-9886.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	37.96	21.88	37.08	50.68	50.32	34.49	37.87	56.78	49.96	33.14	78.89	24.12
Merged-chr11-43353187-3	chr11	43353103	43353303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21258.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	119.52	73.45	98.69	66.36	133.78	122.92	55.14	99.11	135.91	137.58	107.53	64.85
Merged-chr6-29827411-3	chr6	29827324	29827524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-26317.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	36.34	25.91	46.21	44.24	37.23	40.76	27.24	39.7	31.86	40.17	34.17	20.05
Merged-chr2-125123627-3	chr2	125123534	125123734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162417)	promoter-TSS (NM_001162417)	26.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	23.82	26.66	27.95	30.97	30.68	31.98	22.59	16.68	56.06	33.14	39.7	25.37
Merged-chr17-34296163-3	chr17	34296067	34296267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8396.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	159.5	218.07	184.83	135.54	106.78	158.35	65.44	64.04	192.95	144.61	165.82	105.57
Merged-chr7-107595071-3	chr7	107594970	107595170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	19.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	207.15	214.55	195.1	216.79	186.55	241.76	168.41	225.65	242.32	264.11	336.66	110.58
Merged-chr10-95685359-3	chr10	95685256	95685456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121210.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	64.61	42.51	32.52	55.5	68.73	65.85	33.88	42.48	53.89	48.7	55.27	35.09
Merged-chr8-70700025-3	chr8	70699932	70700132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	2293.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	61.38	51.81	45.64	25.34	60.96	66.48	31.22	23.38	71.2	66.78	67.33	37.59
Merged-chr1-160195145-3	chr1	160195029	160195229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-86.0	NM_025474	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	392.89	319.44	359.39	315.32	372.69	432.1	314.23	375.7	509.23	511.65	554.74	300.11
Merged-chr3-83859259-3	chr3	83859170	83859370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17662.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	33.92	12.58	21.11	16.49	33.14	36.37	17.61	19.49	25.37	32.64	38.69	20.05
Merged-chr5-25243308-1	chr5	25243208	25243408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	-3065.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	27.05	23.14	25.1	30.57	5.73	3.45	1.33	2.61	1.57	2.51	3.01	1.57
Merged-chr1-128016330-3	chr1	128016225	128016425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	86146.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	98.93	87.78	83.29	106.58	122.73	132.95	81.71	108.45	142.21	127.03	162.8	94.29
Merged-chr19-47730785-3	chr19	47730686	47730886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-970.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	28.67	37.23	34.8	26.14	54.0	51.11	29.56	30.93	48.98	80.84	72.86	29.13
Merged-chr17-46711422-3	chr17	46711333	46711533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145488)	promoter-TSS (NM_145488)	-30.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	67.03	55.84	64.46	36.2	37.64	54.56	31.89	46.57	62.15	53.73	44.72	33.83
Merged-chr18-80692033-3	chr18	80691933	80692133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16140.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	44.01	33.45	49.63	62.74	66.68	45.78	44.84	62.83	50.75	36.65	60.3	35.71
Merged-chr4-135856048-3	chr4	135855973	135856173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	2.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	108.62	98.6	91.84	82.45	91.64	139.54	61.78	73.99	132.57	154.15	102.51	91.16
Merged-chr6-13607888-3	chr6	13607757	13607957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_155435, exon 1 of 4)	non-coding (NR_155435, exon 1 of 4)	241.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	63.4	70.93	47.35	76.82	57.68	92.5	91.68	69.95	86.35	114.98	86.93	59.21
Merged-chr8-84978632-4	chr8	84978479	84978679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008416, exon 1 of 1)	5' UTR (NM_008416, exon 1 of 1)	169.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	119.93	121.49	104.39	77.22	134.19	143.62	71.42	81.08	161.87	175.74	226.62	115.91
Merged-chr7-101348014-3	chr7	101347901	101348101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-68.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	29.07	27.67	39.93	27.35	46.23	29.16	21.92	22.68	27.73	25.11	26.63	21.3
Merged-chr11-116087598-3	chr11	116087505	116087705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-610.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	18.17	25.4	22.82	14.48	36.0	35.75	10.63	14.16	30.09	33.64	30.65	30.39
Merged-chr4-86612148-3	chr4	86612045	86612245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173400)	promoter-TSS (NM_173400)	-90.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	161.52	151.92	175.7	199.49	177.96	243.33	160.11	228.25	209.47	187.29	307.52	119.67
Merged-chr1-191072747-1	chr1	191072647	191072847	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	9726.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	26.65	24.65	33.09	26.95	47.05	62.4	30.56	42.03	72.18	80.34	68.34	28.19
Merged-chr11-74724268-5	chr11	74724144	74724344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037610)	promoter-TSS (NR_037610)	140.0	NM_013625	18472.0	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	55.32	85.02	37.65	52.29	51.14	83.1	72.75	48.87	78.28	91.38	60.8	39.16
Merged-chr8-110847117-3	chr8	110847022	110847222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	98.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	16.56	19.37	29.66	22.12	20.46	19.76	13.29	18.28	16.52	18.08	17.59	17.54
Merged-chr11-30163292-2	chr11	30163178	30163378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	34979.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	11.31	16.1	9.7	6.44	24.96	15.37	13.29	29.86	0.39	0.0	0.5	0.0
Merged-chr14-57746709-3	chr14	57746618	57746818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	-595.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	25.04	18.86	35.37	27.75	31.91	20.07	25.24	32.66	36.19	25.11	43.72	29.45
Merged-chr9-101552958-3	chr9	101552853	101553053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210759.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	40.38	34.96	46.21	42.23	49.09	52.05	43.85	72.79	84.77	50.71	108.03	60.77
Merged-chr3-61340314-3	chr3	61340208	61340408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24199.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	14.94	24.15	20.54	7.64	21.68	65.54	19.27	16.01	37.17	22.09	21.61	4.7
Merged-chr13-73328485-3	chr13	73328381	73328581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010888)	promoter-TSS (NM_010888)	1.0	NR_033306	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	105.79	101.87	114.66	77.62	98.59	91.88	86.7	110.33	168.37	131.55	175.37	107.76
Merged-chr4-143212654-3	chr4	143212541	143212741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	68.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	33.52	32.7	31.38	26.95	18.41	31.67	25.91	33.08	31.86	33.64	34.17	26.94
Merged-chr1-87659430-3	chr1	87659313	87659513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	39101.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	62.59	70.93	91.27	72.4	92.87	104.73	57.8	68.64	77.3	56.24	89.44	61.09
Merged-chr4-57930762-3	chr4	57930664	57930864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14500.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	20.19	22.13	34.8	28.56	51.55	33.87	43.85	80.05	74.15	42.18	42.21	38.53
Merged-chr8-111258829-2	chr8	111258718	111258918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009149, exon 1 of 26)	exon (NM_009149, exon 1 of 26)	384.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	12.11	22.39	14.83	26.95	17.18	14.74	23.92	20.44	22.42	22.09	34.17	25.69
Merged-chr2-132689414-3	chr2	132689314	132689514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358261)	promoter-TSS (NM_001358261)	-743.0	NM_001358261	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	33.52	34.46	33.09	42.63	48.68	31.67	26.91	46.04	46.62	43.18	55.27	34.15
Merged-chr2-19371912-3	chr2	19371801	19372001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029619, intron 1 of 4)	CpG	265.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	22.61	18.36	7.99	22.12	16.77	36.37	33.55	23.19	20.65	24.1	32.16	24.12
Merged-chr2-167505446-3	chr2	167505332	167505532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1989.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	24.63	21.63	14.83	25.34	32.32	37.63	16.61	19.74	36.98	55.23	34.17	27.57
Merged-chr2-52513870-3	chr2	52513764	52513964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	44747.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	45.63	33.96	36.51	30.57	26.59	30.1	31.89	24.39	32.65	27.11	28.64	26.94
Merged-chr7-29816035-3	chr7	29815932	29816132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-40.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	144.96	104.89	146.04	156.86	150.55	170.9	106.29	164.55	143.78	105.44	189.44	88.65
Merged-chr14-30672090-3	chr14	30671989	30672189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17714.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	29.48	24.65	21.68	23.33	29.86	33.55	15.61	30.42	37.76	48.2	34.17	20.68
Merged-chr5-76974757-4	chr5	76974720	76974920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025691, exon 1 of 19)	exon (NM_025691, exon 1 of 19)	119.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	27.05	17.36	16.54	29.76	24.14	33.87	45.18	26.07	34.03	43.68	39.7	31.33
Merged-chr4-149137452-3	chr4	149137368	149137568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027263, intron 1 of 4)	CpG	132.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	40.38	37.73	27.38	55.91	27.0	48.29	36.54	24.08	37.37	27.62	13.57	27.25
Merged-chr10-44589490-3	chr10	44589405	44589605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130757.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	142.14	149.16	183.12	166.91	155.46	183.44	132.54	147.45	144.96	97.41	156.27	96.49
Merged-chr6-86665993-3	chr6	86665889	86666089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	3170.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	21.8	26.91	26.24	24.13	33.14	32.3	26.57	37.96	32.26	22.59	48.74	32.27
Merged-chr16-4475253-3	chr16	4475148	4475348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	47827.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	112.26	113.19	140.9	109.8	114.96	117.9	72.41	94.26	134.34	134.06	132.15	121.86
Merged-chr12-102382438-3	chr12	102382373	102382573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	57340.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	27.05	14.09	45.64	41.43	27.0	44.53	88.36	125.24	35.99	17.07	60.3	30.07
Merged-chr17-8283777-3	chr17	8283678	8283878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-35.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	111.45	129.54	107.25	124.28	143.6	158.98	155.79	140.47	155.97	161.68	246.72	101.19
Merged-chrX-98938062-3	chrX	98937936	98938136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_207633, exon 1 of 7)	5' UTR (NM_207633, exon 1 of 7)	255.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	86.01	101.37	116.94	106.99	106.37	122.29	101.98	117.42	122.93	83.35	141.7	85.84
Merged-chr19-7341773-3	chr19	7341690	7341890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007928)	promoter-TSS (NM_007928)	70.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	115.49	108.41	70.17	66.36	121.09	137.66	56.47	51.76	136.89	156.15	123.11	77.06
Merged-chr4-45972252-3	chr4	45972154	45972354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146142)	promoter-TSS (NM_146142)	-43.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	180.9	169.53	196.81	199.49	180.01	189.71	129.88	178.85	226.98	219.92	274.86	138.46
Merged-chr10-81570970-3	chr10	81570873	81571073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4314.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	21.0	25.91	40.5	35.8	26.59	35.12	37.54	24.28	35.4	47.2	25.12	25.06
Merged-chr13-113917767-3	chr13	113917656	113917856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123248.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	38.76	42.51	58.19	60.73	35.59	48.92	49.16	91.74	74.94	34.65	87.93	51.06
Merged-chr14-55147009-3	chr14	55146901	55147101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30066.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	130.02	89.54	124.36	129.11	107.59	123.55	102.97	127.29	154.79	120.51	166.32	102.75
Merged-chr17-43326893-3	chr17	43326793	43326993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33538.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	27.05	17.1	19.4	30.16	41.73	31.67	20.93	26.07	46.22	49.71	56.28	20.05
Merged-chr18-46525132-3	chr18	46525020	46525220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173423, intron 1 of 2)	intron (NM_173423, intron 1 of 2)	851.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	118.72	119.73	148.32	144.39	150.55	168.7	119.25	168.34	164.63	170.72	207.02	105.57
Merged-chr18-80408811-3	chr18	80408735	80408935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-44581.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	70.66	59.61	83.29	42.63	78.55	73.06	64.11	98.47	38.75	27.11	40.2	31.64
Merged-chr7-12961922-3	chr7	12961832	12962032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3906.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	111.45	109.16	100.97	135.94	129.69	171.52	117.92	165.67	179.77	169.71	194.46	115.6
Merged-chr11-95416169-3	chr11	95416074	95416274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2091.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	70.66	42.01	66.74	33.78	44.18	23.52	21.26	20.36	33.24	32.64	36.18	20.99
Merged-chr16-32079347-3	chr16	32079242	32079442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177326)	promoter-TSS (NM_177326)	0.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	95.7	104.64	108.39	121.06	108.82	127.31	87.69	94.6	129.81	127.53	145.22	91.16
Merged-chr10-68277827-3	chr10	68277718	68277918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	908.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	29.48	28.93	34.8	31.77	38.46	31.67	21.92	26.64	32.85	49.21	49.75	19.11
Merged-chr14-75754132-3	chr14	75754016	75754216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177381, intron 1 of 22)	CpG	377.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	16.15	29.43	22.82	18.9	20.46	28.54	35.54	33.93	27.54	26.11	47.23	23.49
Merged-chr12-110706986-3	chr12	110706890	110707090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10595.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	137.69	102.37	112.95	147.61	129.69	168.7	117.26	137.69	145.94	160.67	182.9	109.02
Merged-chr18-62088137-3	chr18	62088055	62088255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91826.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	15.34	19.37	34.8	36.6	24.96	28.85	22.59	30.93	24.78	16.07	31.15	14.72
Merged-chr7-19093247-3	chr7	19093150	19093350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126095, exon 15 of 15)	non-coding (NR_126095, exon 15 of 15)	-1294.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	23.02	22.39	18.25	13.67	11.05	32.3	10.96	13.35	26.16	33.64	32.16	21.3
Merged-chr12-79296357-3	chr12	79296273	79296473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-91.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	69.45	75.71	62.18	55.1	80.18	90.0	44.84	72.14	96.18	104.44	94.97	67.35
Merged-chr2-151576238-3	chr2	151576091	151576291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145535, intron 1 of 8)	CpG	3568.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	34.73	24.15	33.66	29.36	43.36	32.93	32.88	44.64	40.71	38.16	52.26	23.49
Merged-chr1-63114626-3	chr1	63114480	63114680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081436)	promoter-TSS (NM_001081436)	109.0	NR_045915	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	34.73	46.03	40.5	44.64	51.14	59.27	46.84	37.77	46.42	57.24	52.76	46.68
Merged-chr11-78176520-3	chr11	78176417	78176617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080849, intron 1 of 14)	intron (NM_080849, intron 1 of 14)	149.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	50.47	37.73	34.23	32.98	42.14	59.89	45.18	27.42	43.66	43.18	48.24	25.06
Merged-chr9-21918234-3	chr9	21918127	21918327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324531)	promoter-TSS (NM_001324531)	-44.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	121.14	93.82	81.58	78.03	122.32	123.55	71.08	108.25	123.13	128.04	119.09	49.18
Merged-chr4-144908986-3	chr4	144908892	144909092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	15855.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	38.36	33.45	29.66	42.23	49.5	60.21	60.12	68.5	33.63	26.11	37.69	34.15
Merged-chr18-67933178-3	chr18	67933063	67933263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172631)	promoter-TSS (NM_172631)	-10.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	28.27	25.66	30.23	31.77	29.46	47.98	31.22	29.61	21.05	27.11	19.6	14.1
Merged-chr7-25238510-3	chr7	25238384	25238584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-633.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	59.76	66.65	79.29	69.58	77.73	84.04	51.15	60.36	89.49	110.46	107.03	67.04
Merged-chr11-106276619-3	chr11	106276509	106276709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029467)	promoter-TSS (NM_029467)	-63.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	62.59	57.85	52.48	49.87	108.41	77.45	34.88	47.75	98.15	124.02	103.01	49.81
Merged-chr16-56075952-3	chr16	56075816	56076016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360073, intron 3 of 24)	CpG	436.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	26.65	37.73	28.52	23.33	32.32	33.55	31.22	40.96	33.83	28.62	52.26	31.95
Merged-chr10-127422231-3	chr10	127422122	127422322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	1355.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	46.44	38.99	23.39	28.15	22.91	45.47	29.56	31.65	51.14	55.73	55.27	24.43
Merged-chr1-131110917-3	chr1	131110808	131111008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13065.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	103.78	84.51	66.74	51.88	112.5	139.23	61.45	68.47	126.86	139.08	136.68	69.23
Merged-chr11-3141893-2	chr11	3141791	3141991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 21 of 32)	intron (NM_030207, intron 21 of 32)	17870.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	42.4	42.51	43.35	41.43	100.64	84.98	90.02	58.18	2.36	4.02	0.5	2.51
Merged-chr7-49047359-3	chr7	49047278	49047478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	88305.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	11.71	8.3	19.97	15.69	15.55	5.96	33.22	18.9	15.34	13.56	22.61	24.12
Merged-chr5-25081751-3	chr5	25081652	25081852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	18890.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	42.4	23.9	37.08	49.47	74.05	73.38	49.16	90.0	55.27	34.65	63.82	41.04
Merged-chr7-129746943-1	chr7	129746843	129747043	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER44C|DNA|TcMar-Tigger	155080.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	2.83	3.52	5.7	8.85	4.09	1.88	6.98	11.8	4.52	1.0	3.52	5.95
Merged-chr7-48789017-3	chr7	48788952	48789152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	49.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	46.03	51.56	30.23	73.2	56.87	73.69	45.51	59.97	72.77	60.75	117.08	44.8
Merged-chr17-71135274-3	chr17	71135177	71135377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48255.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	86.41	47.04	132.35	126.69	105.14	68.99	127.22	165.06	110.15	69.29	131.15	75.5
Merged-chr8-53511781-3	chr8	53511696	53511896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	94.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	169.59	175.57	161.44	210.35	163.64	174.03	143.17	156.65	217.73	204.86	272.85	108.39
Merged-chr2-38479743-3	chr2	38479651	38479851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-31946.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	33.92	30.43	48.49	55.91	40.09	41.39	35.54	57.39	40.32	36.15	55.78	30.39
Merged-chr19-8819434-3	chr19	8819352	8819552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	51.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	125.98	112.43	130.63	117.44	110.46	129.82	97.99	74.5	145.94	147.12	141.7	81.76
Merged-chr3-95530008-3	chr3	95529905	95530105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021281, intron 2 of 7)	intron (NM_021281, intron 2 of 7)	3219.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	47.65	32.7	51.34	50.27	39.27	49.23	40.52	59.83	46.81	54.23	74.87	36.65
Merged-chr14-50924859-3	chr14	50924762	50924962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	31.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	109.83	129.29	91.84	98.94	129.28	131.7	84.04	76.65	116.83	134.06	104.52	58.27
Merged-chr12-119157244-3	chr12	119157151	119157351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81025.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	52.09	39.74	45.07	49.47	57.27	39.82	40.19	64.32	58.22	55.73	78.39	45.74
Merged-chr8-70439700-3	chr8	70439596	70439796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-123.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	136.89	133.81	144.9	106.99	129.28	183.75	88.36	122.19	140.83	150.63	176.87	80.2
Merged-chr4-134923590-3	chr4	134923482	134923682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-43.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	120.33	102.87	93.55	95.32	118.64	148.01	58.46	79.65	132.17	172.72	154.26	80.51
Merged-chr1-85894575-3	chr1	85894457	85894657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	47.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	44.42	30.69	59.33	28.56	41.73	42.33	35.21	43.71	67.46	56.74	90.95	41.98
Merged-chr17-28952440-3	chr17	28952350	28952550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	14.0	NM_001356299	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	54.11	44.02	40.5	31.77	42.55	50.49	19.6	31.51	50.75	61.26	43.21	42.6
Merged-chr4-47261316-3	chr4	47261205	47261405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	53293.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	180.9	147.14	107.25	132.73	150.14	186.26	139.18	157.49	155.38	199.34	194.96	104.94
Merged-chr7-44857244-3	chr7	44857150	44857350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290767)	promoter-TSS (NM_001290767)	104.0	NM_001290766	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	41.59	34.46	46.78	36.6	51.55	45.15	31.22	30.06	47.99	39.67	48.74	21.3
Merged-chr3-139205766-3	chr3	139205693	139205893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-100.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	37.55	44.02	41.64	51.48	50.73	45.15	60.79	51.45	54.09	84.86	77.38	53.26
Merged-chr18-65669103-1	chr18	65669003	65669203	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-29165.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.85	3.52	14.83	6.03	5.73	0.94	7.64	9.39	2.36	2.01	1.0	0.0
Merged-chr19-40640053-3	chr19	40639958	40640158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19712.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	25.84	19.12	16.54	12.87	40.09	30.1	27.57	25.32	40.71	53.22	40.2	20.36
Merged-chr5-36554036-3	chr5	36553939	36554139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	B3A|SINE|B2	-23416.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	29.07	18.36	35.37	27.35	24.14	23.52	13.29	23.86	18.49	23.1	33.16	12.22
Merged-chr16-92301221-3	chr16	92301122	92301322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138743)	promoter-TSS (NM_138743)	-81.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	46.44	25.91	27.95	46.25	56.46	51.74	24.58	43.88	72.58	50.21	58.29	38.22
Merged-chr9-78113270-3	chr9	78113168	78113368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019987)	promoter-TSS (NM_019987)	30.0	NM_019987	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	55.32	50.81	53.05	66.36	77.73	69.93	53.81	85.49	87.13	47.7	93.96	43.54
Merged-chr9-100546126-4	chr9	100545995	100546195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010878)	promoter-TSS (NM_010878)	39.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	115.49	116.46	110.1	131.12	109.64	127.62	156.78	128.92	161.28	168.21	174.36	119.04
Merged-chr17-47010144-3	chr17	47010072	47010272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177374, exon 1 of 47)	exon (NM_001177374, exon 1 of 47)	360.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	20.59	32.2	20.54	27.75	25.36	48.29	29.9	21.36	28.52	44.69	23.62	25.69
Merged-chr11-115142173-3	chr11	115142060	115142260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8168.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	53.3	27.67	44.5	43.04	51.14	47.66	32.22	47.52	35.6	31.13	31.15	24.12
Merged-chr19-9917971-3	chr19	9917900	9918100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18467.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	24.23	26.41	32.52	44.64	31.09	42.96	21.92	39.95	42.09	22.59	31.66	28.82
Merged-chr6-48700403-3	chr6	48700275	48700475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7869.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	81.97	94.57	61.61	67.57	13.91	30.42	14.28	10.82	63.33	57.74	58.29	18.8
Merged-chr1-87327537-1	chr1	87327437	87327637	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146112, intron 1 of 28)	CpG	539.0	NM_001110212	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	11.31	20.12	9.13	20.91	16.77	18.5	19.93	11.55	9.83	14.06	20.1	22.24
Merged-chr10-127311757-3	chr10	127311673	127311873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	13.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	109.02	98.1	123.22	95.32	102.28	107.87	69.76	86.69	134.14	121.01	142.71	86.15
Merged-chr4-41275477-3	chr4	41275357	41275557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-322.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	44.82	45.53	31.38	34.59	86.73	74.94	28.9	60.45	86.35	82.35	95.97	49.5
Merged-chr15-79075127-3	chr15	79075060	79075260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145139)	promoter-TSS (NM_145139)	-63.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	58.95	48.04	77.58	64.35	72.41	86.55	63.11	75.53	62.15	64.77	76.88	31.01
Merged-chr10-99451392-3	chr10	99451277	99451477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157794.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	39.98	28.93	18.83	31.37	45.0	34.81	14.95	29.1	48.78	32.13	40.7	21.93
Merged-chr2-127070641-3	chr2	127070504	127070704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026678)	promoter-TSS (NM_026678)	-53.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	71.88	68.67	74.73	88.48	89.18	82.78	51.15	90.17	78.28	61.26	118.08	55.76
Merged-chr2-11602654-1	chr2	11602554	11602754	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	545.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	4.04	10.31	5.7	21.72	2.86	5.02	18.93	17.3	9.83	12.05	9.55	10.96
Merged-chr14-54259199-3	chr14	54259109	54259309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-23.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	64.61	32.45	82.72	65.56	65.87	66.79	62.12	81.48	84.77	67.78	95.97	44.17
Merged-chr18-31910706-3	chr18	31910624	31910824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	1179.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	104.99	112.18	93.55	115.83	104.32	109.75	97.99	132.42	139.26	140.59	177.38	99.93
Merged-chr7-128379033-3	chr7	128378941	128379141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	39131.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	36.75	41.75	36.51	28.15	30.68	43.59	29.23	44.72	34.42	38.66	56.78	31.95
Merged-chr3-96572128-3	chr3	96572026	96572226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5325.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	53.3	48.04	52.48	28.96	41.32	56.44	42.85	52.09	62.94	56.74	84.42	36.03
Merged-chr3-157576140-1	chr3	157576040	157576240	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359745, intron 1 of 3)	intron (NM_001359745, intron 1 of 3)	9248.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	7.27	2.26	13.69	8.04	1.64	4.39	12.29	8.5	5.51	6.03	8.54	11.28
Merged-chr10-66814609-3	chr10	66814499	66814699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105785.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	86.01	68.92	71.88	63.15	67.91	95.33	47.83	80.66	88.51	84.86	87.43	53.88
Merged-chr10-5805607-3	chr10	5805535	5805735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-170.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	173.63	182.61	159.73	189.03	235.23	253.68	148.48	242.22	284.61	289.71	407.51	169.16
Merged-chr6-91117007-3	chr6	91116918	91117118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018815)	promoter-TSS (NM_018815)	-192.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	62.18	52.32	57.05	71.19	51.55	60.52	63.11	70.4	42.29	42.18	58.29	47.62
Merged-chr16-30922814-3	chr16	30922719	30922919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158613.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	21.0	30.69	27.95	28.56	37.64	34.49	25.58	31.82	39.34	43.68	29.14	21.62
Merged-chr7-19508581-3	chr7	19508449	19508649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177692)	promoter-TSS (NM_177692)	-121.0	NR_138583	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	33.52	31.44	32.52	27.35	20.86	36.69	40.52	24.2	30.88	31.63	35.17	23.18
Merged-chr17-24696128-3	chr17	24696031	24696231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357836)	promoter-TSS (NM_001357836)	25.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	77.12	47.54	39.36	40.62	49.5	82.16	37.2	51.45	85.76	80.84	96.48	31.33
Merged-chr11-51925783-3	chr11	51925675	51925875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41856.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	37.15	38.23	58.76	41.43	69.55	57.07	72.41	90.45	71.2	46.19	109.54	44.8
Merged-chr8-23208890-3	chr8	23208816	23209016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	-463.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	12.52	12.32	20.54	8.85	18.0	18.81	17.94	16.15	12.78	14.06	21.61	14.72
Merged-chr7-80535146-3	chr7	80535046	80535246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007550)	promoter-TSS (NM_007550)	-27.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	144.56	106.65	143.18	172.54	142.37	154.9	78.39	137.33	171.12	151.64	248.73	106.51
Merged-chr7-126770987-3	chr7	126770897	126771097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024228, exon 8 of 10)	exon (NM_024228, exon 8 of 10)	4583.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	19.38	27.17	29.66	24.13	61.77	85.61	39.2	41.41	35.21	28.62	42.71	31.95
Merged-chr18-56933013-3	chr18	56932934	56933134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3226.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	44.01	21.63	19.97	46.66	33.96	31.04	33.88	52.46	27.73	31.13	35.68	32.27
Merged-chr18-53745138-3	chr18	53745048	53745248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-601.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	153.44	107.91	130.06	111.41	137.05	144.56	89.02	117.14	166.79	179.25	203.0	120.92
Merged-chr2-32535213-3	chr2	32535102	32535302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-157.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	116.7	89.8	94.13	75.21	128.46	104.73	63.44	93.03	129.03	123.52	143.71	75.18
Merged-chr1-97718651-3	chr1	97718558	97718758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	51434.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	49.26	39.49	65.03	43.04	59.73	59.27	49.16	91.43	63.92	60.25	99.49	63.28
Merged-chr11-58323344-3	chr11	58323246	58323446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	19.0	NM_001256517	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	134.46	107.4	120.94	102.16	132.96	146.44	109.95	120.28	140.24	164.69	162.8	93.04
Merged-chr8-11555375-3	chr8	11555280	11555480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-382.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	159.9	123.5	134.06	128.7	174.28	158.35	102.31	132.51	164.63	201.34	207.02	98.99
Merged-chr8-27022565-3	chr8	27022455	27022655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1244.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	31.9	23.14	13.12	19.71	28.23	23.2	15.94	33.31	43.86	30.63	29.65	16.92
Merged-chr13-43795707-3	chr13	43795610	43795810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	10598.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	18.98	20.37	49.63	34.59	27.0	22.89	29.23	35.16	33.63	16.57	56.28	37.28
Merged-chr4-45472254-3	chr4	45472159	45472359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58569.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	60.17	45.78	48.49	50.27	73.64	53.31	113.27	138.62	49.57	36.15	53.77	52.63
Merged-chrX-106031304-3	chrX	106031160	106031360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	4036.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	30.28	19.12	22.82	20.11	50.32	27.91	26.57	34.46	40.71	31.13	32.66	24.12
Merged-chr7-45813942-3	chr7	45813840	45814040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011181, intron 1 of 11)	CpG	376.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	17.77	18.86	10.84	9.25	13.09	17.56	13.95	13.12	17.7	21.59	20.6	12.53
Merged-chr13-100409340-2	chr13	100409239	100409439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008670, intron 15 of 15)	intron (NM_008670, intron 15 of 15)	43525.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	15.34	14.84	25.67	18.9	33.96	50.17	30.56	17.16	6.29	5.52	4.52	2.82
Merged-chr14-120262920-3	chr14	120262804	120263004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12765.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	67.03	73.19	61.04	54.3	52.37	96.27	66.77	57.42	74.74	59.25	66.83	38.53
Merged-chr5-100820919-3	chr5	100820834	100821034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	1.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	23.82	28.93	21.11	27.35	31.91	24.46	23.58	25.6	28.32	17.57	31.66	15.35
Merged-chr16-92867879-2	chr16	92867771	92867971	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41797.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	9.29	13.58	19.4	22.52	24.55	25.09	14.62	23.8	38.75	18.58	40.2	19.74
Merged-chr11-93995260-3	chr11	93995175	93995375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-816.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	156.67	125.76	139.76	148.01	154.23	218.25	97.99	153.53	220.68	193.81	218.08	115.6
Merged-chr9-108342548-3	chr9	108342470	108342670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3490.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	139.71	143.62	119.23	130.71	150.55	180.93	100.65	132.73	133.55	156.15	137.18	121.55
Merged-chr11-61469500-3	chr11	61469392	61469592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15500.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	86.82	76.72	118.65	89.29	117.82	121.35	77.06	94.68	134.73	132.05	116.07	79.88
Merged-chr11-88047679-3	chr11	88047587	88047787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173374, exon 1 of 4)	5' UTR (NM_173374, exon 1 of 4)	314.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	82.78	82.0	86.71	71.99	70.37	100.03	50.16	47.86	103.26	110.97	99.99	55.45
Merged-chr14-60269366-3	chr14	60269309	60269509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	4204.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	56.13	73.7	49.06	29.36	53.18	76.2	36.54	22.07	56.65	57.24	37.18	24.43
Merged-chr14-120832022-3	chr14	120831922	120832122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79172.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	29.48	33.7	31.38	40.22	34.36	42.33	34.88	41.38	59.2	50.71	82.41	37.91
Merged-chr15-96715239-3	chr15	96715133	96715333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15505.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	25.84	20.12	45.07	37.81	33.14	17.87	18.6	26.36	40.32	39.16	32.66	19.11
Merged-chr19-5837699-3	chr19	5837594	5837794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	7784.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	34.32	26.66	44.5	27.35	49.5	40.76	29.9	44.61	29.5	22.59	38.69	20.36
Merged-chr11-8689089-3	chr11	8688980	8689180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24545.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	50.47	50.56	66.74	55.5	78.14	51.43	66.43	75.79	92.64	109.46	94.47	62.97
Merged-chr1-152582124-3	chr1	152582030	152582230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43087.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	18.57	16.6	42.21	28.15	33.14	14.11	15.28	27.64	25.57	17.07	27.64	13.47
Merged-chr13-18717315-3	chr13	18717213	18717413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	21.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	68.24	62.88	70.17	79.64	110.05	94.7	50.82	83.92	108.38	121.01	113.56	69.55
Merged-chr9-21161476-3	chr9	21161378	21161578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4236.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	118.72	99.1	77.01	49.07	101.46	134.21	71.42	57.42	160.1	140.59	95.47	62.65
Merged-chr2-145860740-3	chr2	145860633	145860833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028724, exon 9 of 13)	exon (NM_028724, exon 9 of 13)	-42508.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	65.41	27.92	50.77	41.83	47.46	54.56	59.46	93.93	67.07	40.17	73.86	49.81
Merged-chr2-61577825-3	chr2	61577737	61577937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	-749.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	19.38	20.63	14.26	16.89	17.59	31.36	23.92	15.08	58.42	41.17	72.36	22.24
Merged-chr1-162625521-3	chr1	162625432	162625632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13618.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	43.21	35.21	43.93	62.74	44.59	62.71	49.83	50.83	72.77	61.76	66.33	47.62
Merged-chr18-46597661-3	chr18	46597590	46597790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010120)	promoter-TSS (NM_010120)	-14.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	170.81	149.66	112.38	119.05	167.32	224.2	99.98	163.8	201.8	224.94	217.07	123.11
Merged-chr2-68867354-3	chr2	68867242	68867442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	5901.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	57.74	65.4	42.21	22.93	31.09	59.27	26.91	24.7	43.86	44.19	42.71	19.11
Merged-chr4-88390722-5	chr4	88390595	88390795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48231.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	11.31	7.55	11.41	8.04	23.32	24.46	4.65	13.74	30.49	18.08	19.09	10.96
Merged-chr2-163472636-3	chr2	163472524	163472724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028122)	promoter-TSS (NR_028122)	5.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	44.42	32.7	39.93	37.0	45.82	48.6	28.9	45.28	49.17	50.71	60.8	33.52
Merged-chr3-20035174-3	chr3	20035078	20035278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146324, exon 1 of 9)	exon (NM_001146324, exon 1 of 9)	132.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	54.51	81.24	66.17	109.4	75.28	92.82	147.48	102.81	48.39	71.3	62.31	69.23
Merged-chr11-3932065-3	chr11	3931956	3932156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-12.0	NM_015749	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	35.94	39.24	42.78	44.64	46.64	45.15	42.52	68.38	56.84	43.18	72.36	39.78
Merged-chr2-155404838-3	chr2	155404727	155404927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22971.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	54.11	47.54	43.35	49.07	56.46	88.11	55.47	68.47	69.63	72.3	81.4	41.35
Merged-chr7-16047878-3	chr7	16047792	16047992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-23953.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	15.75	14.34	11.41	14.88	13.5	22.89	24.58	12.28	21.44	14.56	22.11	16.29
Merged-chr5-137103128-1	chr5	137103028	137103228	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13079.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	4.04	4.02	1.14	7.64	11.05	14.42	5.65	14.5	1.18	1.51	0.0	2.19
Merged-chr9-41207612-3	chr9	41207507	41207707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1452.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	50.07	42.76	34.8	20.51	39.27	51.74	20.59	32.97	84.58	91.89	77.88	49.5
Merged-chr13-102683951-3	chr13	102683836	102684036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9611.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	19.79	17.86	18.25	28.96	17.18	26.65	17.94	28.77	21.64	18.08	26.63	13.47
Merged-chr12-55483151-4	chr12	55483054	55483254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	9493.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	20.19	15.09	9.13	4.83	11.45	22.89	0.0	2.61	17.7	13.56	2.51	3.13
Merged-chr5-147072064-2	chr5	147071957	147072157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	4515.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	21.0	27.17	35.94	33.78	69.14	52.37	50.49	63.28	0.98	2.51	12.06	1.57
Merged-chr6-95117782-3	chr6	95117693	95117893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102670)	promoter-TSS (NM_001102670)	-87.0	NM_001008785	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	207.15	216.06	249.29	283.95	256.1	301.03	259.76	374.44	389.05	387.12	516.05	284.76
Merged-chr14-103034265-3	chr14	103034187	103034387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-484.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	41.59	41.25	57.05	29.36	48.27	92.82	35.21	60.62	110.34	86.36	90.95	40.72
Merged-chr7-99183951-3	chr7	99183853	99184053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	100.14	66.65	67.88	83.26	60.55	79.33	62.78	95.86	63.53	67.28	65.32	45.11
Merged-chr12-55398716-3	chr12	55398609	55398809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	-116.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	186.55	173.55	232.75	218.39	171.41	222.64	189.67	228.34	215.77	220.42	306.51	118.73
Merged-chr5-103678325-3	chr5	103678230	103678430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22598.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	18.57	17.1	35.37	22.93	21.68	22.58	13.95	12.25	35.99	18.58	42.21	27.88
Merged-chr10-67702915-3	chr10	67702828	67703028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130969.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	22.21	29.68	38.22	48.67	50.32	45.15	29.56	41.33	43.66	45.69	55.78	42.29
Merged-chr12-80945495-3	chr12	80945385	80945585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	-14.0	NM_001347416	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	79.95	73.95	54.19	38.61	70.77	102.22	41.19	56.92	122.34	124.52	88.94	66.73
Merged-chr1-40085981-3	chr1	40085891	40086091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-102.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	44.42	42.76	27.38	40.62	20.05	43.59	29.56	20.41	61.76	35.15	45.22	26.94
Merged-chr8-71289325-3	chr8	71289209	71289409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16595.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	72.28	53.07	116.37	100.15	102.28	74.94	93.01	137.72	130.01	94.4	113.56	93.35
Merged-chr15-80813053-3	chr15	80812955	80813155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	14445.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	15.75	18.36	17.11	23.33	35.59	37.94	16.94	20.55	23.6	40.67	26.63	35.4
Merged-chr14-73168791-3	chr14	73168705	73168905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	26020.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	80.36	65.9	104.39	84.46	81.82	112.26	77.73	81.06	99.13	115.99	84.42	56.07
Merged-chr17-73937217-3	chr17	73937099	73937299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	12997.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	49.26	47.54	95.27	90.9	77.73	71.49	79.06	111.81	72.77	47.2	89.44	65.47
Merged-chr19-9445504-1	chr19	9445404	9445604	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113744.0	NR_073559	619371.0	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	4.85	3.27	9.13	4.83	5.73	0.31	9.63	10.29	0.0	0.0	1.0	0.0
Merged-chr11-119491424-3	chr11	119491343	119491543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153849)	promoter-TSS (NR_153849)	96.0	NM_001164636	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	67.03	75.96	43.35	40.22	42.55	72.75	49.49	45.67	50.75	63.77	39.19	39.47
Merged-chr8-26966663-3	chr8	26966546	26966746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10690.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	26.25	16.85	25.1	27.75	28.23	37.63	31.56	34.04	43.07	27.11	46.23	21.62
Merged-chr1-101902290-3	chr1	101902173	101902373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	746505.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	6.86	16.85	25.67	19.31	42.14	32.93	35.87	43.68	27.54	31.63	50.25	21.3
Merged-chr10-62486933-3	chr10	62486819	62487019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133672)	promoter-TSS (NM_133672)	-114.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	132.04	100.61	91.84	72.4	121.09	175.6	65.77	78.36	180.76	194.82	182.4	83.02
Merged-chr3-95754926-3	chr3	95754809	95755009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	68.0	NR_151589	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	33.52	31.44	58.19	34.99	45.41	41.08	14.62	37.09	46.03	45.19	53.77	24.12
Merged-chr10-4386973-5	chr10	4386866	4387066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033466, intron 1 of 2)	CpG	509.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	133.25	129.29	132.92	78.83	165.28	179.99	140.51	150.11	200.43	206.37	290.94	112.78
Merged-chr19-10831932-6	chr19	10831827	10832027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1869.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	41.59	18.11	32.52	14.88	46.64	56.44	21.92	33.73	66.28	52.22	69.34	35.4
Merged-chr14-58201472-3	chr14	58201361	58201561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	128775.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	30.69	16.6	27.38	28.96	31.91	22.89	14.95	25.32	26.75	25.61	28.14	15.98
Merged-chr2-167421542-3	chr2	167421441	167421641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-169.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	176.86	131.55	115.23	140.37	145.23	232.04	169.74	137.61	232.29	202.35	212.55	139.72
Merged-chr15-66476095-3	chr15	66475986	66476186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	24824.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	21.8	29.68	35.94	31.37	35.59	29.79	16.61	38.64	42.88	27.62	47.23	26.0
Merged-chr8-69625419-5	chr8	69625326	69625526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045553)	promoter-TSS (NM_001045553)	122.0	NM_172754	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	53.3	83.51	66.17	74.0	75.28	93.44	65.77	59.97	63.53	96.4	87.93	58.27
Merged-chr1-60960729-3	chr1	60960631	60960831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17183.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	19.79	14.84	30.23	18.9	24.14	24.15	17.27	35.27	35.99	23.6	30.65	16.6
Merged-chr3-40894133-3	chr3	40894017	40894217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-160.0	NM_026622	269423.0	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	215.22	245.99	233.89	199.89	204.96	242.08	184.35	179.69	262.58	275.66	396.96	140.97
Merged-chr10-88201150-3	chr10	88201063	88201263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	66.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	23.42	32.45	30.23	42.63	47.87	59.89	42.85	50.05	55.47	55.73	57.79	37.91
Merged-chr15-58744650-3	chr15	58744556	58744756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78771.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	65.41	56.34	54.19	39.01	58.5	84.04	46.5	49.35	84.58	71.8	87.93	49.18
Merged-chr10-41490382-3	chr10	41490254	41490454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009213)	promoter-TSS (NM_009213)	-14.0	NM_009213	20598.0	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	77.53	72.19	84.43	79.23	107.59	95.33	55.47	90.84	78.87	95.4	133.16	54.51
Merged-chr16-32277542-3	chr16	32277473	32277673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027355, exon 1 of 6)	5' UTR (NM_027355, exon 1 of 6)	112.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	29.48	31.19	29.09	23.73	27.41	32.61	24.91	21.06	22.82	26.61	22.11	27.88
Merged-chr6-47651057-3	chr6	47650947	47651147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	4047.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	75.51	79.48	94.13	90.09	81.0	93.13	88.03	82.4	33.04	38.66	41.2	35.4
Merged-chr11-11690258-3	chr11	11690037	11690237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301866)	promoter-TSS (NM_001301866)	-40.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	14.94	7.29	8.56	24.13	8.18	9.09	18.6	22.15	18.49	14.06	23.62	15.98
Merged-chr16-13754571-3	chr16	13754462	13754662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357954)	promoter-TSS (NM_001357954)	-2.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	143.75	121.24	98.12	127.9	162.82	140.79	120.58	175.4	149.29	148.62	194.96	113.72
Merged-chrX-48513543-3	chrX	48513435	48513635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012019)	promoter-TSS (NM_012019)	28.0	NM_001290364	26926.0	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	73.09	62.63	65.6	98.94	76.09	92.82	71.42	86.64	95.2	78.83	129.14	49.81
Merged-chr1-75219320-3	chr1	75219219	75219419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-25.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	67.43	34.46	43.93	34.59	87.14	90.31	45.18	66.76	63.14	59.25	128.13	52.63
Merged-chr6-87182926-1	chr6	87182826	87183026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_054041, intron 16 of 17)	RSINE1|SINE|B4	78180.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	21.8	17.36	18.25	14.88	0.0	0.0	1.33	0.11	0.0	3.01	0.0	0.63
Merged-chr13-45965253-4	chr13	45965144	45965344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009124)	promoter-TSS (NM_009124)	-253.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	36.34	58.1	57.05	48.26	53.59	71.49	36.87	38.33	54.09	70.29	56.78	38.22
Merged-chr7-12780195-1	chr7	12780095	12780295	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4537.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	6.86	3.27	2.28	8.04	3.27	10.35	8.3	6.64	9.24	12.05	15.07	5.64
Merged-chr15-63595770-3	chr15	63595594	63595794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-116086.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	25.84	27.42	47.35	42.23	32.73	31.04	41.85	54.9	26.75	14.56	24.12	15.98
Merged-chr15-75678424-3	chr15	75678321	75678521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028404, intron 1 of 13)	intron (NM_028404, intron 1 of 13)	379.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	31.9	22.89	33.09	20.51	29.05	47.35	15.61	21.62	38.55	39.16	52.26	12.22
Merged-chr11-118234642-3	chr11	118234527	118234727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13965.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	33.52	23.64	37.08	29.36	37.23	23.2	26.57	39.06	24.98	26.11	33.16	23.49
Merged-chr3-130058654-3	chr3	130058569	130058769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	2238.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	38.36	22.64	49.63	35.8	27.41	28.85	19.27	35.44	38.35	43.68	61.3	27.57
Merged-chr4-107314326-3	chr4	107314225	107314425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-38.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	47.65	56.34	78.72	50.27	74.46	79.96	53.48	80.36	71.4	56.74	98.49	44.8
Merged-chr2-122028491-3	chr2	122028404	122028604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144545)	promoter-TSS (NM_144545)	-76.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	194.23	193.17	218.48	214.37	238.1	300.72	204.95	211.51	332.6	318.84	411.53	195.48
Merged-chr10-98684336-3	chr10	98684249	98684449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230293.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	65.01	64.39	45.64	57.92	60.96	68.05	44.84	55.74	84.18	69.79	77.38	33.21
Merged-chr4-137994764-3	chr4	137994669	137994869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	1313.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	31.09	17.86	19.97	26.55	21.27	30.73	17.94	27.98	28.72	18.58	29.14	18.17
Merged-chr6-86848951-2	chr6	86848856	86849056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	484.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	14.54	12.83	6.28	2.41	18.0	13.48	8.97	10.68	22.23	27.11	11.56	12.84
Merged-chr1-180302909-3	chr1	180302800	180303000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27576.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	119.52	129.03	118.65	123.88	94.91	141.73	104.97	102.34	145.35	144.1	198.98	67.98
Merged-chr8-94779314-3	chr8	94779209	94779409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	7129.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	50.47	44.27	52.48	25.34	44.59	54.88	55.14	31.23	50.75	62.76	53.26	42.29
Merged-chr15-54929607-3	chr15	54929490	54929690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9444.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	131.64	166.76	212.21	190.24	174.28	159.92	161.1	157.4	185.08	170.21	268.33	129.69
Merged-chr5-34534076-3	chr5	34533980	34534180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	8296.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	80.36	75.71	112.95	91.7	78.14	81.53	75.73	63.76	85.17	84.86	118.08	46.05
Merged-chr13-45371826-3	chr13	45371724	45371924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17918.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	62.18	73.19	54.19	70.79	73.23	96.27	63.11	65.33	90.67	69.79	74.37	59.52
Merged-chr17-5238922-4	chr17	5238778	5238978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179889.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	19.38	13.08	15.97	20.91	24.96	29.48	25.58	19.07	17.7	27.11	30.15	19.42
Merged-chr11-116130626-3	chr11	116130515	116130715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	513.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	48.05	39.49	32.52	31.37	52.37	46.1	17.27	31.74	42.09	51.72	49.24	25.06
Merged-chr11-59202447-3	chr11	59202345	59202545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037964)	promoter-TSS (NR_037964)	-14.0	NR_037964	72203.0	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	39.57	33.2	32.52	27.35	34.36	27.59	19.27	21.76	57.24	84.86	74.87	32.27
Merged-chr15-27625516-3	chr15	27625407	27625607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5186.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	24.63	27.92	42.21	63.55	39.27	32.61	38.86	65.05	47.6	51.72	78.39	39.16
Merged-chr13-49198965-3	chr13	49198879	49199079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11432.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	58.15	64.39	100.4	50.27	105.14	114.45	105.96	152.55	168.76	142.6	180.89	105.57
Merged-chr4-28420863-1	chr4	28420763	28420963	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-392268.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	1.62	1.01	0.0	4.02	5.73	9.72	6.64	13.23	1.77	3.51	7.54	2.51
Merged-chrX-93757702-3	chrX	93757595	93757795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74400.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	29.07	22.39	38.79	23.33	33.14	30.1	37.54	27.79	40.12	26.11	48.74	37.28
Merged-chr14-46994961-3	chr14	46994860	46995060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6380.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	36.34	23.64	36.51	43.84	51.14	43.27	33.88	64.29	28.32	33.64	31.66	24.43
Merged-chr2-22773682-3	chr2	22773565	22773765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	-662.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	51.28	60.62	69.6	55.91	57.27	66.79	50.16	78.93	60.78	64.77	70.35	44.8
Merged-chr2-5771062-3	chr2	5770957	5771157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56295.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	79.14	71.94	74.16	113.82	51.14	72.12	57.13	51.39	89.3	109.96	103.01	68.29
Merged-chr2-75832212-3	chr2	75832109	75832309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	32.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	77.93	87.53	83.86	74.0	85.91	93.44	54.48	94.32	79.66	97.41	95.97	45.74
Merged-chr11-30986408-3	chr11	30986304	30986504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026527)	promoter-TSS (NM_026527)	-39.0	NM_001290667	68044.0	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	36.75	33.2	62.75	33.38	47.46	69.61	58.79	56.55	56.45	56.24	101.5	48.56
Merged-chr17-34291765-3	chr17	34291659	34291859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3988.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	56.13	75.96	91.84	59.53	45.41	57.07	18.6	33.36	89.1	70.29	120.6	59.52
Merged-chr18-20697289-3	chr18	20697166	20697366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-32006.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	63.4	41.25	58.19	58.32	51.55	60.83	35.87	75.7	53.11	52.22	61.3	39.47
Merged-chr17-12119230-3	chr17	12119121	12119321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026644)	promoter-TSS (NM_026644)	-63.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	71.07	38.74	57.05	98.54	91.64	124.17	89.35	127.21	105.03	101.43	156.77	81.45
Merged-chr7-47055950-3	chr7	47055859	47056059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5319.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	85.6	66.15	120.94	89.69	117.41	125.74	176.71	169.21	126.67	77.83	145.22	85.84
Merged-chr19-5845488-3	chr19	5845219	5845419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	159.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	81.16	104.13	80.43	84.46	74.87	101.91	49.49	46.68	97.95	113.98	115.57	67.98
Merged-chr17-5574856-3	chr17	5574737	5574937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	MLT1H1|LTR|ERVL-MaLR	82237.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	45.23	38.99	82.15	57.92	66.27	73.69	67.76	108.65	70.02	66.78	135.67	64.53
Merged-chr5-115272905-3	chr5	115272805	115273005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016698)	promoter-TSS (NM_016698)	-10.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	55.32	43.26	70.17	32.98	51.14	59.58	29.56	38.13	79.66	86.86	62.31	52.32
Merged-chr7-99963049-3	chr7	99962950	99963150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17408.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	48.86	28.93	38.79	38.61	34.77	49.86	36.21	46.54	24.0	22.09	30.15	18.17
Merged-chr2-83724891-1	chr2	83724791	83724991	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008402, exon 1 of 30)	exon (NM_008402, exon 1 of 30)	494.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	17.36	12.32	6.85	18.5	12.68	10.03	19.27	15.87	16.33	17.57	27.64	15.98
Merged-chr11-69921525-3	chr11	69921422	69921622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166596)	promoter-TSS (NM_001166596)	-136.0	NM_181582	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	247.93	200.97	221.91	199.49	199.23	266.85	159.11	153.76	310.18	294.74	258.78	183.26
Merged-chrX-75514248-3	chrX	75514152	75514352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011692)	promoter-TSS (NM_011692)	-45.0	NM_011692	22327.0	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	27.46	34.71	26.81	25.34	37.64	54.56	26.91	38.05	36.78	42.18	49.75	16.6
Merged-chr11-77515071-3	chr11	77514978	77515178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026185)	promoter-TSS (NM_026185)	-39.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	71.47	47.04	74.16	67.97	56.46	47.35	39.2	59.05	48.98	36.15	59.29	25.37
Merged-chr18-36513034-3	chr18	36512957	36513157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2748.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	51.28	42.26	42.78	56.31	61.37	61.46	82.38	100.96	81.82	61.26	89.94	48.87
Merged-chr19-6236322-3	chr19	6236227	6236427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-487.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	43.61	47.79	51.34	36.6	54.41	67.1	30.56	48.5	65.69	59.25	72.36	30.07
Merged-chr2-127444547-3	chr2	127444422	127444622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029629)	promoter-TSS (NM_029629)	43.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	34.32	30.43	17.11	22.12	31.91	25.71	14.62	28.37	31.08	29.12	40.7	20.36
Merged-chr8-95807590-3	chr8	95807482	95807682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-120.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	186.96	182.86	203.65	170.13	219.28	259.01	182.03	236.33	264.15	301.77	298.47	159.14
Merged-chr7-110844386-3	chr7	110844276	110844476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025999)	promoter-TSS (NM_025999)	5.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	41.59	46.78	37.65	43.44	36.82	54.25	30.23	32.97	49.37	55.73	46.73	34.15
Merged-chr3-96557882-3	chr3	96557799	96557999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-58.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	139.71	150.92	155.16	129.11	149.32	211.66	112.94	123.25	177.81	191.3	203.51	118.41
Merged-chr17-24719994-3	chr17	24719895	24720095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	-30.0	NR_027900	73474.0	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	131.23	155.19	113.52	124.28	133.78	227.34	75.07	86.33	179.77	225.95	203.0	90.85
Merged-chr11-98682401-3	chr11	98682294	98682494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-160.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	91.66	84.26	98.12	65.96	103.09	145.18	72.41	62.02	136.11	160.17	147.73	74.87
Merged-chr9-37420822-3	chr9	37420732	37420932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164767, intron 17 of 27)	CpG	12343.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	128.41	100.36	103.82	141.17	141.55	150.2	133.86	173.33	161.48	104.94	271.34	101.81
Merged-chr10-99425477-3	chr10	99425376	99425576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162245.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	21.0	24.15	43.93	23.73	57.27	67.1	41.19	47.69	42.68	43.18	50.75	23.18
Merged-chr19-12556488-3	chr19	12556388	12556588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17022.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	32.71	14.59	49.63	29.36	21.68	39.2	12.95	28.85	25.37	30.13	25.63	27.25
Merged-chr17-78417781-3	chr17	78417688	78417888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 1 of 9)	CpG	364.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	64.2	58.1	54.19	88.08	65.87	71.49	62.45	71.1	93.23	103.43	150.74	55.13
Merged-chr5-93032844-1	chr5	93032744	93032944	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	12178.0	NM_175270	78088.0	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	5.65	2.26	6.28	8.45	18.82	18.19	33.55	26.61	8.85	6.53	3.01	6.58
Merged-chr12-55492378-2	chr12	55492266	55492466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010907, exon 1 of 6)	exon (NM_010907, exon 1 of 6)	281.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	196.24	204.49	126.64	88.89	141.96	216.99	116.92	65.5	178.2	194.82	121.1	55.13
Merged-chr3-157534378-5	chr3	157534267	157534467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	202.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	81.97	57.6	54.76	71.99	78.55	91.25	67.43	80.83	85.95	145.61	134.67	99.93
Merged-chr2-132247776-3	chr2	132247667	132247867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	21.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	122.75	111.93	82.72	74.0	123.14	131.07	56.47	76.37	146.14	145.61	125.62	66.73
Merged-chr18-84682027-3	chr18	84681911	84682111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	48.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	89.64	106.9	108.96	118.25	110.46	148.95	100.65	108.06	174.46	162.18	207.02	76.75
Merged-chr5-134639432-3	chr5	134639329	134639529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-20.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	78.34	69.42	100.97	95.32	88.78	130.76	53.48	78.59	116.83	145.11	134.16	76.12
Merged-chr15-89355695-3	chr15	89355604	89355804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271601)	promoter-TSS (NM_001271601)	-15.0	NR_073376	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	88.03	75.46	68.45	59.53	84.68	96.89	55.8	67.15	101.88	109.46	120.6	64.22
Merged-chr5-115845146-3	chr5	115845048	115845248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007708)	promoter-TSS (NM_007708)	-508.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	48.46	29.93	23.39	50.27	52.37	45.47	34.21	54.45	64.71	54.73	63.82	42.29
Merged-chr2-11513263-3	chr2	11513172	11513372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-11182.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	32.3	36.47	36.51	55.1	63.82	50.17	55.47	73.93	54.88	40.17	75.87	36.97
Merged-chr19-61244894-3	chr19	61244794	61244994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16476.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	71.47	67.41	45.64	85.67	67.91	69.93	72.08	78.76	78.28	75.32	92.46	44.8
Merged-chr4-106911392-3	chr4	106911243	106911443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023672)	promoter-TSS (NM_023672)	-127.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	46.44	39.24	42.21	37.81	50.32	58.01	26.57	64.77	57.63	51.72	74.87	31.64
Merged-chr9-88709998-3	chr9	88709907	88710107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9580.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	35.53	46.53	71.31	49.07	63.82	58.64	71.42	62.02	48.98	44.69	57.28	46.99
Merged-chr18-39458938-3	chr18	39458851	39459051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	28294.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	16.56	21.38	41.64	22.93	26.18	40.76	26.57	34.07	30.49	38.16	28.64	25.37
Merged-chr15-99723955-3	chr15	99723863	99724063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	511.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	28.67	15.09	29.66	26.14	27.82	23.2	17.94	23.44	23.41	22.59	26.13	26.63
Merged-chr11-21009707-3	chr11	21009653	21009853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81571.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	25.44	17.36	20.54	32.58	29.05	26.97	22.92	23.36	30.88	27.11	46.73	18.17
Merged-chr4-136898893-3	chr4	136898809	136899009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007572)	promoter-TSS (NM_007572)	-65.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	136.08	140.35	168.86	103.37	168.14	191.59	126.22	113.47	147.12	148.62	153.26	84.58
Merged-chr5-65938158-3	chr5	65938058	65938258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28966.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	65.01	60.37	57.05	44.64	66.27	83.41	33.22	61.09	86.54	66.78	84.92	34.77
Merged-chr7-63911458-3	chr7	63911358	63911558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5399.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	33.11	22.64	35.37	33.38	67.91	37.63	36.87	56.5	45.04	49.71	80.9	37.28
Merged-chr5-122707608-3	chr5	122707507	122707707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	63.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	84.39	97.34	66.17	69.98	74.05	110.38	51.49	45.87	89.3	88.37	119.59	69.55
Merged-chr15-67174731-3	chr15	67174650	67174850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2132.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	46.84	57.1	49.63	33.78	38.05	60.21	26.91	49.35	46.62	53.73	66.33	42.6
Merged-chr1-191119504-3	chr1	191119390	191119590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21076.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	48.46	41.25	60.47	81.24	67.5	74.0	57.8	70.04	33.04	28.62	54.77	21.62
Merged-chr14-10209216-3	chr14	10209111	10209311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	MTD|LTR|ERVL-MaLR	244247.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	14.54	12.58	20.54	26.14	27.41	16.31	25.58	36.36	33.83	22.59	35.17	22.56
Merged-chr10-95322360-3	chr10	95322252	95322452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	1357.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	57.34	43.51	78.72	60.73	60.55	63.66	40.19	74.08	76.91	56.24	88.44	32.89
Merged-chr12-84361918-3	chr12	84361814	84362014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172581)	promoter-TSS (NM_172581)	-54.0	NM_172582	217707.0	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	159.9	168.02	135.77	159.27	152.6	222.95	89.02	151.49	229.73	195.32	191.95	120.29
Merged-chr11-21425922-3	chr11	21425842	21426042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54675.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	28.27	16.85	30.23	32.18	58.09	38.88	32.22	56.5	32.85	30.13	34.17	15.35
Merged-chr5-146819751-1	chr5	146819651	146819851	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13139.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	31.9	18.61	35.37	32.58	29.05	36.69	36.21	42.62	33.83	33.14	46.73	15.98
Merged-chr7-79466267-3	chr7	79466161	79466361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017462)	promoter-TSS (NM_017462)	12.0	NM_001360095	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	138.5	151.92	176.27	172.14	158.32	206.64	129.21	145.6	211.64	239.0	266.32	149.11
Merged-chr13-24802545-3	chr13	24802448	24802648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	891.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	26.25	15.85	35.94	34.99	31.91	38.88	28.9	55.07	58.61	38.66	50.25	30.39
Merged-chr3-61363327-2	chr3	61363225	61363425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1182.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	26.65	22.89	26.24	16.09	22.91	27.28	18.6	19.51	25.77	28.12	26.13	12.53
Merged-chr16-23988767-3	chr16	23988665	23988865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	87.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	60.57	103.13	39.36	63.15	56.46	95.64	65.11	39.93	68.84	66.28	48.24	47.93
Merged-chr5-88573513-3	chr5	88573419	88573619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	8479.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	62.99	70.43	86.14	53.09	97.78	122.29	105.96	122.64	98.15	115.99	104.01	64.22
Merged-chr8-25201656-3	chr8	25201538	25201738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177089)	promoter-TSS (NM_177089)	-96.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	120.73	102.62	111.81	85.27	136.23	180.62	102.64	118.96	197.28	200.34	229.13	101.5
Merged-chr6-124273403-3	chr6	124273289	124273489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31262.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	79.55	58.35	118.65	109.8	131.73	95.64	122.24	90.9	67.86	98.41	119.59	52.63
Merged-chr1-67477329-1	chr1	67477229	67477429	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	354302.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	1.61	5.32	4.39	7.97	11.44	9.24	4.52	7.03	8.77
Merged-chr3-96262384-3	chr3	96262299	96262499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033596)	TTS (NM_033596)	918.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	42.8	29.68	26.81	36.2	37.64	37.0	29.56	42.25	51.53	30.63	97.48	42.92
Merged-chr10-78465729-3	chr10	78465634	78465834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-786.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	43.61	37.73	68.45	42.23	55.64	50.17	53.81	69.73	71.0	44.19	73.36	48.87
Merged-chr9-124016803-3	chr9	124016700	124016900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5171.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	18.57	5.28	44.5	26.55	35.59	30.42	14.95	39.73	17.51	8.03	16.58	16.92
Merged-chr6-97866785-3	chr6	97866684	97866884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	59726.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	89.24	62.88	65.6	52.29	68.73	79.65	60.12	70.65	51.53	52.22	65.83	21.93
Merged-chr9-13545907-3	chr9	13545793	13545993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74096.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	52.49	48.8	79.29	84.06	58.09	67.42	64.77	81.76	58.81	46.19	64.32	31.95
Merged-chr4-111720499-3	chr4	111720403	111720603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	493.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	63.8	38.99	60.47	55.1	74.46	65.54	65.11	68.3	97.56	110.97	120.6	51.38
Merged-chr11-53859305-3	chr11	53859203	53859403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-47.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	39.57	31.94	50.77	40.62	49.09	37.0	28.57	29.22	51.34	47.7	59.8	26.31
Merged-chr1-23921958-3	chr1	23921820	23922020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	CpG	461.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	18.17	19.87	25.67	20.51	15.55	21.64	28.57	29.64	26.75	33.64	46.23	16.29
Merged-chr2-32452106-3	chr2	32452000	32452200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-630.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	199.07	196.19	173.99	154.44	174.69	232.04	129.88	166.85	185.67	199.34	216.57	120.61
Merged-chr14-32201924-3	chr14	32201833	32202033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016897)	promoter-TSS (NM_016897)	-38.0	NM_001359915	26430.0	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	55.32	38.99	34.23	20.51	49.91	50.8	23.25	24.95	61.96	44.19	57.79	45.42
Merged-chr14-87416532-3	chr14	87416432	87416632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-51.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	72.68	65.9	47.92	92.51	67.5	82.16	77.06	80.86	98.74	70.29	141.7	64.22
Merged-chr14-31019110-3	chr14	31019004	31019204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	27.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	58.55	58.1	58.76	40.22	68.73	89.68	26.24	53.89	94.02	98.91	67.84	43.54
Merged-chr6-125219155-3	chr6	125219060	125219260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080557, intron 3 of 3)	intron (NM_001080557, intron 3 of 3)	3579.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	31.09	16.1	19.4	17.29	36.41	23.2	14.95	21.08	23.41	19.08	32.66	17.86
Merged-chr7-101900869-3	chr7	101900750	101900950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081679, intron 3 of 3)	MIRb|SINE|MIR	2935.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	54.11	44.27	49.63	34.19	60.55	62.71	40.86	40.37	55.86	62.76	55.27	36.34
Merged-chr6-113661701-3	chr6	113661623	113661823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23256.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	44.82	37.73	54.19	29.36	61.37	66.79	23.25	39.87	65.3	75.82	73.36	38.85
Merged-chr14-66186755-3	chr14	66186647	66186847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27077.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	50.47	46.03	49.63	24.53	51.96	48.29	19.6	29.33	52.52	64.27	58.29	35.71
Merged-chr11-89092902-3	chr11	89092794	89092994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033266, exon 4 of 4)	3' UTR (NM_001033266, exon 4 of 4)	19053.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	79.95	64.14	82.15	77.22	72.0	67.73	64.44	70.96	41.7	28.62	34.67	24.75
Merged-chrUn_JH584304-51737-1	chrUn_JH584304	51637	51837	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003518)	TTS (NR_003518)	7952.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	29.7	38.16	39.7	29.13
Merged-chr6-26206213-3	chr6	26206090	26206290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	274764.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	44.01	29.68	48.49	85.27	67.5	59.89	48.16	115.77	69.63	84.86	90.45	47.3
Merged-chr12-71055693-3	chr12	71055591	71055791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	39724.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	34.32	16.85	38.79	37.81	48.68	45.78	32.22	50.89	39.73	56.74	40.7	17.86
Merged-chr11-60046418-3	chr11	60046319	60046519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290012)	promoter-TSS (NM_001290012)	70.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	35.94	48.04	48.49	48.67	70.37	66.16	56.8	38.24	40.32	60.75	44.22	33.52
Merged-chr18-39491572-3	chr18	39491472	39491672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4327.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	44.01	50.56	29.09	46.25	36.41	54.56	49.83	34.54	44.06	48.2	92.46	40.1
Merged-chr19-37561698-3	chr19	37561594	37561794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	11276.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	31.09	21.38	24.53	31.77	29.05	19.76	20.26	34.26	37.37	27.62	28.14	18.48
Merged-chr11-61653198-3	chr11	61653073	61653273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-148.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	44.82	45.78	41.07	31.37	43.36	63.03	24.25	27.08	65.5	86.36	53.77	27.57
Merged-chr4-135307666-2	chr4	135307559	135307759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34899.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	31.9	29.43	17.11	2.82	5.73	33.24	4.65	5.83	12.98	11.55	5.53	2.82
Merged-chr12-91738586-3	chr12	91738495	91738695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	47841.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	75.11	52.07	92.98	94.11	106.37	85.61	162.1	193.99	61.56	51.72	116.07	41.66
Merged-chr8-71625259-3	chr8	71625162	71625362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146211)	TTS (NM_146211)	5844.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	57.74	52.57	79.29	80.04	76.09	75.26	60.46	80.08	76.71	61.76	93.96	63.28
Merged-chr4-141790823-3	chr4	141790724	141790924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-180.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	167.58	155.7	126.64	131.12	207.42	231.42	133.86	134.83	232.88	248.54	228.63	110.27
Merged-chr10-8848371-3	chr10	8848273	8848473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37697.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	57.74	49.05	74.73	37.81	62.18	95.33	64.11	68.24	58.02	73.81	73.36	27.25
Merged-chr4-148940822-3	chr4	148940726	148940926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027195, intron 11 of 15)	intron (NM_027195, intron 11 of 15)	11496.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	54.92	27.42	26.24	30.16	42.14	48.29	33.55	45.62	48.39	44.69	83.91	31.64
Merged-chr7-49000982-3	chr7	49000879	49001079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	41906.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	35.53	46.53	58.19	37.0	51.96	62.09	67.43	82.4	75.33	44.19	86.93	48.24
Merged-chr7-16401092-4	chr7	16400883	16401083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-213.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	28.27	32.45	17.11	24.94	25.36	25.4	32.55	23.92	24.39	31.63	24.62	32.58
Merged-chrX-151017276-3	chrX	151017139	151017339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168600)	promoter-TSS (NM_001168600)	54.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	51.69	46.78	82.72	57.51	85.5	97.52	51.82	82.77	64.71	55.73	83.91	41.66
Merged-chr19-40663926-3	chr19	40663810	40664010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	4140.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	26.65	24.65	33.66	37.4	47.05	56.44	36.21	32.07	51.73	40.67	55.78	23.49
Merged-chr1-180403872-3	chr1	180403780	180403980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73331.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	232.99	212.79	251.0	240.52	258.55	306.05	261.75	263.86	233.67	308.79	386.91	194.85
Merged-chrX-36874307-3	chrX	36874236	36874436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313696)	promoter-TSS (NM_001313696)	41.0	NM_019668	22209.0	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	34.73	37.23	25.67	30.16	36.82	63.03	27.9	26.66	42.68	51.72	48.24	21.62
Merged-chr4-41377798-3	chr4	41377702	41377902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355509, intron 3 of 5)	intron (NM_001355509, intron 3 of 5)	25839.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	46.03	44.02	47.92	46.25	59.32	56.13	52.15	52.68	61.96	60.75	42.71	41.98
Merged-chr1-51500375-3	chr1	51500288	51500488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21989.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	21.0	10.56	33.66	17.29	36.82	40.45	25.58	36.81	31.67	21.09	30.65	19.74
Merged-chr9-95682844-3	chr9	95682772	95682972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 5 of 8)	intron (NM_029620, intron 5 of 8)	45244.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	57.74	55.84	100.4	72.8	61.77	83.41	70.09	85.07	104.44	90.38	132.66	72.68
Merged-chr11-82016607-3	chr11	82016471	82016671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19006.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	37.96	60.37	53.62	39.42	63.82	101.6	42.85	35.24	62.35	76.32	78.89	39.47
Merged-chr4-155200992-3	chr4	155200904	155201104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	21531.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	126.79	83.26	109.53	98.54	105.14	135.46	63.11	87.9	112.31	105.44	146.72	83.64
Merged-chr16-16302900-3	chr16	16302814	16303014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-51.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	79.14	43.51	63.32	65.96	82.23	65.22	60.46	66.06	84.18	73.31	117.58	54.51
Merged-chr10-100016172-2	chr10	100016076	100016276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	CpG	355.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	10.09	36.72	26.24	23.33	11.45	21.01	17.27	18.17	8.46	15.06	18.59	10.02
Merged-chr15-102136281-3	chr15	102136180	102136380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-65.0	NM_001033277	223918.0	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	121.14	108.66	99.26	94.52	146.46	126.06	66.1	121.51	156.37	151.64	171.85	98.37
Merged-chr10-69186058-3	chr10	69185959	69186159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22493.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	56.94	49.3	48.49	51.48	67.09	58.01	61.78	60.48	79.46	71.3	77.88	41.66
Merged-chr11-23008428-3	chr11	23008345	23008545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4942.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	18.17	16.1	37.08	15.69	17.18	23.2	23.92	23.05	28.91	20.08	27.64	15.35
Merged-chr16-56064545-3	chr16	56064428	56064628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360073, intron 1 of 24)	(CAAAA)n|Simple_repeat|Simple_repeat	6998.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	26.65	32.7	49.06	44.24	51.55	32.93	56.8	56.5	46.22	31.63	60.3	25.06
Merged-chr19-16084486-3	chr19	16084392	16084592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48339.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	110.24	104.89	118.65	128.3	90.82	114.14	93.34	106.29	126.86	113.98	142.2	76.12
Merged-chr1-52307236-1	chr1	52307136	52307336	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74004.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	4.44	6.29	6.28	4.02	117.0	146.75	103.31	128.41	5.31	8.54	5.53	3.13
Merged-chr11-106216886-3	chr11	106216771	106216971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-55.0	NM_001361643	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	87.62	84.76	82.15	73.2	78.55	104.73	53.48	59.1	117.03	105.94	104.01	67.98
Merged-chr3-123385964-3	chr3	123385865	123386065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	25.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	109.83	87.53	110.67	140.37	137.46	179.36	74.41	146.86	118.21	104.44	178.88	93.35
Merged-chr8-85025615-3	chr8	85025497	85025697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	-310.0	NM_001357202	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	76.72	62.38	70.17	64.35	96.96	92.19	51.49	78.84	122.14	89.88	103.51	51.69
Merged-chr15-100757660-3	chr15	100757566	100757766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4081.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	21.0	22.89	22.25	25.34	26.18	30.1	12.95	21.87	20.65	27.62	16.58	16.29
Merged-chr13-52156067-3	chr13	52155975	52156175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59334.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	33.92	25.15	33.66	29.36	28.23	22.26	19.6	39.73	36.19	21.59	43.21	18.8
Merged-chr2-36238472-3	chr2	36238370	36238570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 5 of 10)	MamGypLTR3a|LTR|Gypsy	8044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	39.17	36.22	39.36	61.13	36.0	36.37	69.76	78.11	47.99	34.14	79.89	54.2
Merged-chr6-145553411-1	chr6	145553311	145553511	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62552.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	1.21	1.01	4.56	8.85	4.09	1.88	8.3	12.73	0.39	2.01	1.0	4.39
Merged-chr4-53250513-3	chr4	53250414	53250614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040665, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	4318.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	64.2	67.91	52.48	28.56	78.55	122.92	56.8	35.75	86.15	102.43	111.05	53.26
Merged-chr14-73552832-3	chr14	73552725	73552925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361638)	promoter-TSS (NM_001361638)	39.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	21.8	35.72	31.38	39.42	51.55	41.71	33.22	35.5	43.07	54.73	67.84	31.64
Merged-chr18-54998641-3	chr18	54998554	54998754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6063.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	20.19	16.85	12.55	14.88	30.27	26.65	16.94	36.03	31.47	38.66	43.72	26.0
Merged-chr13-55536622-3	chr13	55536521	55536721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134059)	promoter-TSS (NM_134059)	37.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	207.55	196.69	148.89	164.1	204.55	267.79	108.95	153.14	229.14	272.64	213.05	98.37
Merged-chr3-89998740-3	chr3	89998630	89998830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310681)	promoter-TSS (NM_001310681)	-14.0	NM_001282032	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	48.86	52.82	47.92	38.21	49.09	44.53	16.28	28.65	64.12	65.27	54.27	45.11
Merged-chr2-5861860-3	chr2	5861750	5861950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152181)	TTS (NR_152181)	1084.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	21.0	20.63	23.96	22.93	22.5	23.2	18.27	24.9	32.65	26.61	45.22	23.81
Merged-chr6-30303992-2	chr6	30303877	30304077	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	CpG	562.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	18.57	27.67	12.55	18.5	26.18	25.09	17.94	15.17	37.37	31.13	28.14	19.74
Merged-chr2-25211400-3	chr2	25211256	25211456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021393, exon 1 of 13)	5' UTR (NM_021393, exon 1 of 13)	133.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	34.73	26.41	40.5	43.84	48.27	48.6	26.24	37.35	37.76	44.69	34.17	24.75
Merged-chr3-50438234-1	chr3	50438134	50438334	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011990, intron 2 of 11)	intron (NM_011990, intron 2 of 11)	5379.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	5.65	1.01	4.56	4.42	9.41	9.72	21.59	12.34	1.97	4.52	7.03	1.57
Merged-chr5-43232996-3	chr5	43232893	43233093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175937)	promoter-TSS (NM_175937)	-470.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	118.31	136.83	135.77	140.37	135.82	148.63	181.03	153.2	153.61	191.8	283.9	123.74
Merged-chr13-52596876-3	chr13	52596781	52596981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011518)	promoter-TSS (NM_011518)	-1.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	28.67	28.17	42.78	37.0	57.27	42.96	32.22	38.13	42.09	55.73	51.25	35.71
Merged-chr9-35211081-3	chr9	35210979	35211179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	-24.0	NM_001291448	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	266.91	260.83	259.56	239.31	272.87	371.58	209.6	251.08	300.54	342.44	384.9	195.17
Merged-chr1-80340923-3	chr1	80340842	80341042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313728)	promoter-TSS (NM_001313728)	-252.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	104.99	110.17	91.84	94.92	128.87	132.64	107.96	76.88	156.76	163.69	172.85	94.92
Merged-chr13-102895996-3	chr13	102895896	102896096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	135741.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	31.5	23.14	21.11	43.04	40.09	39.82	20.93	41.1	24.39	27.62	27.13	19.11
Merged-chr15-36578698-3	chr15	36578613	36578813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23140.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	45.63	31.44	65.6	66.36	59.32	73.69	40.52	80.94	58.02	71.8	93.46	50.44
Merged-chr2-4493305-3	chr2	4493212	4493412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-66442.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	17.77	19.87	18.83	16.89	17.18	22.26	10.96	24.08	31.67	31.63	44.72	21.3
Merged-chr1-191224435-3	chr1	191224342	191224542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151547)	promoter-TSS (NR_151547)	-12.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	73.09	66.15	44.5	68.37	58.5	107.87	42.85	65.72	100.51	106.45	97.48	79.88
Merged-chr12-4505529-3	chr12	4505428	4505628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18585.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	31.9	22.89	67.31	62.74	83.87	44.53	64.44	89.64	44.25	44.69	79.89	31.95
Merged-chrX-23675640-3	chrX	23675538	23675738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17413.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	44.42	49.8	59.33	67.17	54.41	52.99	49.16	72.93	57.83	74.81	73.36	45.42
Merged-chr7-89403784-3	chr7	89403667	89403867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	455.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	25.04	19.12	36.51	31.77	29.46	42.65	27.9	30.59	28.72	32.64	27.13	17.86
Merged-chr17-83274253-3	chr17	83274153	83274353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58970.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	107.01	119.22	94.7	61.54	132.55	149.89	101.64	74.36	128.63	157.66	101.5	54.82
Merged-chr10-62553675-3	chr10	62553552	62553752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24805.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	42.4	44.52	71.31	43.44	87.96	94.7	56.47	81.17	82.02	76.82	103.51	57.33
Merged-chr10-51455981-3	chr10	51455885	51456085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24627.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	53.3	30.69	70.74	59.93	67.5	82.47	86.7	122.3	60.38	70.29	92.96	46.36
Merged-chr8-105852013-3	chr8	105851912	105852112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177150)	promoter-TSS (NM_177150)	-4.0	NM_177150	320394.0	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	20.59	15.34	30.23	17.7	17.59	22.89	11.63	20.72	35.99	25.11	31.66	15.66
Merged-chr9-37041221-1	chr9	37041121	37041321	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	L2c|LINE|L2	106101.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	9.29	5.79	5.7	9.65	4.91	4.7	12.29	12.45	0.79	0.0	0.0	0.31
Merged-chr9-59485863-3	chr9	59485768	59485968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019927, intron 1 of 13)	CpG	506.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	27.46	30.69	22.82	26.55	29.05	40.76	24.58	33.31	52.32	45.69	48.24	26.0
Merged-chr11-17953885-3	chr11	17953792	17953992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	-17.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	86.01	66.15	107.82	73.2	116.59	104.11	78.39	134.27	102.08	112.47	202.0	82.39
Merged-chr8-13287755-6	chr8	13287742	13287942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-171.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	59.76	31.19	47.35	24.13	73.23	89.05	23.58	62.44	94.8	89.88	117.08	67.35
Merged-chr17-88066125-3	chr17	88066029	88066229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-838.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	177.27	155.44	170.0	153.64	159.14	195.36	153.8	174.7	234.06	254.07	305.51	151.31
Merged-chr9-16114462-3	chr9	16114360	16114560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-239904.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	60.97	68.92	96.41	110.2	81.82	105.99	94.67	107.52	126.27	82.85	127.13	81.76
Merged-chr6-118419592-3	chr6	118419539	118419739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194339)	promoter-TSS (NM_194339)	-222.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	79.14	95.83	82.15	88.48	69.55	90.0	81.05	72.53	79.07	89.37	90.45	62.65
Merged-chr2-31061043-3	chr2	31060935	31061135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35465.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	56.53	45.02	44.5	30.97	67.91	62.09	37.87	36.84	54.09	45.69	54.27	28.82
Merged-chr7-29155646-3	chr7	29155541	29155741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146023, intron 3 of 7)	CpG	569.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	22.61	14.59	19.4	22.93	37.64	49.23	26.91	28.15	42.88	39.16	39.19	30.39
Merged-chr1-175880662-3	chr1	175880562	175880762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-116.0	NM_012012	26909.0	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	42.4	49.05	49.06	72.8	68.32	74.0	106.29	97.85	42.68	70.8	88.94	61.4
Merged-chr5-122264501-3	chr5	122264398	122264598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-38.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	92.47	97.59	83.86	71.99	132.55	139.23	60.46	93.51	126.47	140.09	170.84	63.28
Merged-chr19-15984973-3	chr19	15984871	15985071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045355)	promoter-TSS (NR_045355)	18.0	NM_198019	208518.0	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	64.2	80.74	66.17	87.28	80.59	63.34	48.16	71.41	65.1	48.7	67.33	40.1
Merged-chr10-25447381-3	chr10	25447302	25447502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	39034.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	29.48	23.39	35.37	41.43	31.91	38.88	31.89	65.86	28.32	28.62	39.19	19.74
Merged-chr2-105904587-3	chr2	105904499	105904699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-35.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	132.04	129.54	153.45	185.01	159.14	169.96	149.14	263.83	206.13	188.29	249.73	121.86
Merged-chr7-143023683-3	chr7	143023573	143023773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110354, intron 4 of 4)	intron (NR_110354, intron 4 of 4)	18014.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	75.91	64.14	59.9	46.66	66.27	94.07	45.18	40.85	89.3	90.88	80.4	47.3
Merged-chr2-145468929-3	chr2	145468832	145469032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 3 of 16)	Tigger7|DNA|TcMar-Tigger	86050.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	43.21	36.22	61.04	91.7	65.87	65.22	55.47	81.73	67.07	79.33	78.89	48.87
Merged-chr7-144915065-3	chr7	144914923	144915123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347537)	promoter-TSS (NM_001347537)	-77.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	129.62	99.1	125.5	121.46	99.0	99.72	71.42	100.04	80.45	81.84	101.0	70.48
Merged-chr7-58829337-3	chr7	58829261	58829461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009728)	TTS (NM_009728)	171159.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	11.71	18.61	15.97	20.91	31.5	25.4	13.29	24.11	16.13	18.58	23.11	17.23
Merged-chr7-25689323-3	chr7	25689221	25689421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011577, intron 1 of 6)	CpG	2319.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	211.59	237.19	218.48	183.0	198.82	277.51	215.25	197.27	281.85	225.45	277.87	130.95
Merged-chr17-24141672-3	chr17	24141573	24141773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-79.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	194.23	167.27	193.38	191.45	195.55	236.75	140.84	186.81	214.39	254.57	265.81	106.51
Merged-chr2-91194861-3	chr2	91194784	91194984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013839, exon 1 of 10)	5' UTR (NM_013839, exon 1 of 10)	151.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	54.51	73.19	59.33	75.21	55.64	99.09	93.67	94.43	138.47	127.03	165.32	96.49
Merged-chr4-53125623-1	chr4	53125523	53125723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34272.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	28.27	18.11	22.82	13.67	29.86	36.37	19.27	13.54	26.55	22.09	13.06	8.77
Merged-chr10-19015374-3	chr10	19015223	19015423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009397)	promoter-TSS (NM_009397)	87.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	163.13	161.98	146.61	86.07	161.19	220.13	98.65	96.53	250.97	299.76	269.33	128.44
Merged-chr4-135353624-1	chr4	135353524	135353724	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-410.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	39.98	34.96	14.26	17.29	47.05	39.82	33.22	37.91	71.59	58.24	77.38	34.15
Merged-chr18-23813574-3	chr18	23813492	23813692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	L1ME1|LINE|L1	9622.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	62.59	59.36	48.49	38.61	54.0	89.05	28.9	55.77	64.12	76.32	70.35	27.88
Merged-chr5-36712041-3	chr5	36711924	36712124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16003.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	42.4	53.58	45.64	78.43	44.59	50.49	40.52	86.83	57.63	70.8	102.51	41.04
Merged-chr4-134496744-3	chr4	134496624	134496824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285847)	promoter-TSS (NM_001285847)	-37.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	91.26	60.62	88.42	96.13	88.78	101.28	77.06	116.16	59.79	74.81	86.43	66.73
Merged-chr5-125292076-3	chr5	125291973	125292173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	49021.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	32.71	16.1	30.23	25.34	36.82	29.79	13.95	46.85	29.7	28.12	47.74	28.82
Merged-chr2-178020922-3	chr2	178020802	178021002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-2382.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	62.59	63.64	56.48	77.62	80.59	104.73	71.08	46.77	125.49	77.32	129.64	58.27
Merged-chr7-44854817-3	chr7	44854725	44854925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290695, exon 4 of 4)	3' UTR (NM_001290695, exon 4 of 4)	-2321.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	41.99	34.21	26.81	32.58	45.82	35.43	41.19	40.93	46.62	35.15	64.82	33.83
Merged-chr16-44173077-3	chr16	44172994	44173194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-303.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	165.56	138.34	134.06	182.2	210.28	211.35	196.98	260.08	249.6	207.37	327.62	151.31
Merged-chr10-80053509-3	chr10	80053404	80053604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	16.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	208.76	225.62	231.03	199.09	190.23	262.15	176.38	203.08	289.92	252.56	334.15	146.61
Merged-chr5-72763180-3	chr5	72763072	72763272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 14 of 17)	intron (NM_013689, intron 14 of 17)	-10395.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	24.23	15.85	20.54	27.75	28.23	26.03	17.61	24.59	34.22	31.63	28.64	21.3
Merged-chr5-149267694-3	chr5	149267616	149267816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2712.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	23.02	17.61	25.1	15.69	34.77	25.09	36.21	31.99	26.36	39.16	35.68	16.29
Merged-chr7-80269610-3	chr7	80269513	80269713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-42.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	43.21	35.97	21.11	19.71	29.46	35.75	21.92	25.07	41.5	30.63	47.23	18.17
Merged-chrX-85573852-3	chrX	85573756	85573956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025729)	promoter-TSS (NM_025729)	-166.0	NM_001358447	66724.0	Mm.119646	NM_025729	ENSMUSG00000035476	Tab3	4921526G09Rik|Map3k7ip3|mKIAA4135	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding	81.97	71.94	108.96	83.26	130.91	130.76	96.66	106.09	120.77	111.47	176.37	72.36
Merged-chr6-86400222-3	chr6	86400125	86400325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67A|LTR|ERV1	-3075.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	79.14	61.12	47.92	36.2	66.68	94.7	73.41	70.71	84.38	60.25	85.92	36.97
Merged-chr2-91950431-3	chr2	91950325	91950525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-77.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	44.01	36.72	51.34	44.64	33.14	26.97	24.25	38.3	40.12	20.59	28.64	27.57
Merged-chr14-102827949-3	chr14	102827878	102828078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154654.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	63.4	42.26	76.44	98.14	81.41	75.26	74.07	98.94	64.12	52.72	94.47	41.04
Merged-chr11-95714065-3	chr11	95713954	95714154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1300.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	35.94	40.75	37.08	37.81	41.32	40.45	10.3	28.21	38.75	33.64	36.18	30.07
Merged-chr7-7121041-3	chr7	7120933	7121133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172738, intron 1 of 4)	intron (NM_172738, intron 1 of 4)	443.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	32.71	29.93	30.8	47.86	45.0	48.29	34.21	62.24	59.6	57.74	64.32	33.21
Merged-chr13-34107201-3	chr13	34107091	34107291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046184, intron 1 of 4)	L1MEf|LINE|L1	6081.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	28.27	22.64	49.63	37.81	22.09	26.65	26.57	30.11	23.21	18.58	50.75	17.23
Merged-chr7-28796813-3	chr7	28796721	28796921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177158, exon 9 of 12)	exon (NM_177158, exon 9 of 12)	7852.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	54.11	51.31	83.86	56.31	69.55	79.02	50.16	68.66	88.31	93.39	132.66	69.23
Merged-chr3-28171450-3	chr3	28171352	28171552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-91762.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	26.65	31.69	57.05	23.33	47.05	41.39	28.57	38.83	44.45	43.68	37.18	18.17
Merged-chr8-104239738-3	chr8	104239623	104239823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 4 of 8)	PB1D10|SINE|Alu	8835.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	86.41	62.63	119.23	89.69	83.05	100.03	71.08	121.12	126.08	89.88	123.61	83.64
Merged-chr10-62602180-4	chr10	62602083	62602283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019553, exon 1 of 15)	exon (NM_019553, exon 1 of 15)	115.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	39.57	65.65	38.79	46.25	50.73	67.42	57.13	49.32	66.09	106.95	83.91	41.35
Merged-chr8-83738331-3	chr8	83738223	83738423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	2988.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	82.37	59.86	102.68	121.46	117.0	108.18	93.34	110.55	161.68	104.44	200.49	105.57
Merged-chr11-97800214-3	chr11	97800119	97800319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 1 of 6)	CpG	654.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	20.59	20.63	34.23	23.33	23.32	12.23	15.94	14.41	17.7	21.09	27.64	34.46
Merged-chr8-106140994-3	chr8	106140869	106141069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3995.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	21.4	13.58	33.09	19.71	27.41	31.36	14.95	26.36	26.36	42.68	28.14	17.23
Merged-chr11-93885789-3	chr11	93885697	93885897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-31.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	126.39	101.87	104.96	72.8	135.41	165.25	61.78	90.36	115.65	191.8	168.83	80.51
Merged-chr8-27023762-3	chr8	27023674	27023874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-25.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	141.73	139.85	124.36	117.04	126.0	186.89	86.36	122.92	228.35	210.88	183.41	114.66
Merged-chr1-162548547-3	chr1	162548458	162548658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-213.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	91.66	79.48	82.15	84.86	126.0	105.36	73.08	114.17	127.65	122.01	171.35	74.56
Merged-chr13-49215652-2	chr13	49215570	49215770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026738, intron 1 of 5)	CpG	356.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	13.33	19.62	19.4	19.31	35.18	19.76	26.91	28.91	22.23	30.13	33.67	27.57
Merged-chr6-50596942-3	chr6	50596815	50597015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027564)	promoter-TSS (NM_027564)	-325.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	107.81	110.92	128.35	135.54	166.51	150.83	95.33	146.78	136.89	148.62	198.48	103.06
Merged-chr19-32186655-3	chr19	32186549	32186749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24364.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	60.57	38.48	32.52	40.62	74.46	106.93	65.77	65.19	57.83	49.21	45.73	23.81
Merged-chr9-95512028-3	chr9	95511938	95512138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-42.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	187.76	193.68	168.28	143.18	143.6	216.37	151.8	122.72	227.17	244.53	188.43	118.1
Merged-chr13-43864659-3	chr13	43864563	43864763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	79551.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	143.35	146.89	183.69	150.02	153.41	221.38	131.21	178.35	188.03	208.37	212.05	103.38
Merged-chr4-98923309-3	chr4	98923207	98923407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-503.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	283.06	296.05	302.34	334.63	343.24	432.1	287.0	385.88	410.09	464.45	484.9	269.41
Merged-chr19-55316484-3	chr19	55316382	55316582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033573)	promoter-TSS (NM_001033573)	425.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	54.92	65.4	47.92	69.18	40.09	70.87	80.72	47.07	31.27	57.74	61.3	37.91
Merged-chr17-70849875-3	chr17	70849783	70849983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	-93.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	52.09	73.19	58.76	64.35	72.82	90.94	66.43	62.36	80.25	115.48	112.05	76.44
Merged-chr17-33799450-3	chr17	33799368	33799568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-11055.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	35.13	24.15	35.37	29.76	54.0	56.13	32.88	39.76	45.43	36.15	37.69	34.77
Merged-chr6-72098093-1	chr6	72097993	72098193	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	485.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	3.23	9.06	8.56	20.11	12.27	7.84	12.62	11.55	9.64	5.02	15.07	14.41
Merged-chr12-111430054-3	chr12	111429939	111430139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12594.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	72.68	46.53	45.64	17.7	48.68	90.94	44.18	24.67	82.61	112.97	63.82	25.37
Merged-chrX-94177973-3	chrX	94177876	94178076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34675.0	NM_012010	26905.0	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	84.39	101.87	91.84	100.95	91.23	108.5	99.32	105.2	110.74	126.53	151.25	78.94
Merged-chr16-97472684-3	chr16	97472588	97472788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020622, intron 7 of 7)	L1MB7|LINE|L1	-9782.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	37.55	45.53	45.64	66.77	39.27	67.42	59.79	63.48	59.2	65.78	71.86	26.94
Merged-chr5-120516275-2	chr5	120516180	120516380	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5088.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	60.57	59.36	57.05	47.86	85.91	125.43	87.36	109.35	124.31	113.48	189.94	71.74
Merged-chr5-140992484-3	chr5	140992369	140992569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175362, intron 1 of 24)	L1ME3|LINE|L1	8127.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	23.82	13.33	32.52	15.28	22.5	10.35	14.62	23.22	25.77	14.56	25.63	11.9
Merged-chr16-32430885-3	chr16	32430774	32430974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009981)	promoter-TSS (NM_009981)	-47.0	NM_009981	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	106.6	83.0	87.85	69.18	87.96	102.85	44.18	70.49	111.72	115.99	122.61	85.52
Merged-chr4-62291338-3	chr4	62291237	62291437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290518)	promoter-TSS (NM_001290518)	-210.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	16.96	28.17	34.8	28.96	29.05	30.1	27.57	25.71	65.1	58.24	50.25	25.06
Merged-chr5-135957723-3	chr5	135957603	135957803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16773.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	199.88	203.49	236.74	190.24	218.87	282.84	143.83	193.65	206.13	183.27	250.74	129.38
Merged-chr18-31760543-1	chr18	31760443	31760643	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-73.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	8.48	10.31	11.41	12.07	8.18	11.6	12.62	14.89	19.87	16.57	26.13	9.71
Merged-chr4-123750971-3	chr4	123750858	123751058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-659.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	48.46	36.22	50.2	51.88	50.32	60.83	27.24	44.36	36.58	41.17	57.79	21.93
Merged-chr1-30873086-2	chr1	30872981	30873181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9825.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	21.0	20.88	17.68	22.93	28.23	31.36	27.9	34.88	27.34	31.13	33.16	32.58
Merged-chr4-107923621-3	chr4	107923501	107923701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009949)	promoter-TSS (NM_009949)	-12.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	163.13	157.96	144.33	157.26	199.23	233.61	135.86	147.59	176.23	191.8	239.18	100.25
Merged-chr2-162976072-3	chr2	162975949	162976149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081338, exon 23 of 23)	3' UTR (NM_001081338, exon 23 of 23)	-11432.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	20.59	10.82	16.54	15.28	32.73	18.19	11.96	20.58	27.34	20.59	26.63	22.56
Merged-chr11-106819686-3	chr11	106819584	106819784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025481)	TTS (NM_025481)	30432.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	37.55	40.5	63.32	51.88	76.91	87.17	71.42	99.93	40.12	39.67	42.71	31.01
Merged-chr6-89297445-3	chr6	89297331	89297531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11706.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	16.15	17.61	26.24	18.1	14.73	20.07	26.91	54.5	23.6	16.57	25.12	21.93
Merged-chr16-87625554-3	chr16	87625492	87625692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72262.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	131.64	120.48	155.16	140.37	185.73	205.39	167.41	175.37	173.87	172.22	194.46	80.82
Merged-chr19-7235026-3	chr19	7234915	7235115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027643, intron 2 of 7)	intron (NM_027643, intron 2 of 7)	6207.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	33.11	25.15	26.24	34.19	42.96	32.93	15.94	26.58	37.96	33.64	43.21	28.51
Merged-chr16-90397061-3	chr16	90396949	90397149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	MLTR14|LTR|ERV1	10652.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	27.05	38.74	56.48	52.29	53.18	39.82	34.88	41.89	35.01	37.66	40.2	20.68
Merged-chr3-53466707-3	chr3	53466629	53466829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	2912.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	34.73	29.43	20.54	32.58	32.73	47.35	20.93	25.49	46.22	32.13	38.69	19.74
Merged-chr11-58224494-3	chr11	58224381	58224581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17D2|LTR|ERVK	9504.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	19.38	14.84	27.95	25.74	22.91	30.42	19.6	23.1	39.93	32.64	33.16	21.3
Merged-chr12-80127407-3	chr12	80127313	80127513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	5431.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	38.36	45.78	59.9	31.37	57.68	65.54	33.88	47.41	70.81	86.36	87.43	36.34
Merged-chr11-3143365-2	chr11	3143284	3143484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 19 of 32)	intron (NM_030207, intron 19 of 32)	19363.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	12.52	22.39	14.26	17.29	22.91	31.36	25.58	25.37	0.0	0.0	0.0	0.0
Merged-chr5-32785714-3	chr5	32785608	32785808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	-82.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	44.42	67.91	59.9	76.82	91.64	95.95	34.88	72.14	93.03	116.99	112.56	54.51
Merged-chr4-45320460-3	chr4	45320356	45320556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025513, exon 1 of 4)	exon (NM_025513, exon 1 of 4)	147.0	NM_025513	66362.0	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	74.3	73.95	80.43	85.27	83.87	95.95	94.67	76.37	45.83	88.37	76.38	52.0
Merged-chr9-118040369-3	chr9	118040276	118040476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048146)	promoter-TSS (NM_001048146)	-146.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	195.03	198.2	198.52	259.82	229.92	243.33	206.94	206.02	276.54	298.25	444.19	160.08
Merged-chr3-136670001-3	chr3	136669902	136670102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293622)	promoter-TSS (NM_001293622)	-64.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	252.78	206.5	195.1	221.61	261.83	253.68	203.95	278.83	282.64	307.79	387.92	204.88
Merged-chr9-75542067-1	chr9	75541967	75542167	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17590.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.81	2.52	10.27	4.83	1.64	2.2	2.33	4.07	17.31	6.03	8.54	9.71
Merged-chr2-155956521-3	chr2	155956435	155956635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001129999)	promoter-TSS (NM_001129999)	-23.0	NM_001129999	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	15.75	15.85	27.95	16.49	41.32	27.28	14.28	22.37	36.39	27.11	45.22	26.94
Merged-chr2-150788907-1	chr2	150788807	150789007	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2111.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.81	2.01	2.28	4.02	4.09	3.76	9.63	8.66	7.28	6.03	7.03	3.13
Merged-chr1-92216890-3	chr1	92216806	92217006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36565.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	86.01	72.19	83.86	92.51	89.59	114.45	83.37	90.48	108.97	94.9	145.22	56.7
Merged-chr6-113638449-3	chr6	113638336	113638536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172161)	promoter-TSS (NM_172161)	-31.0	NM_172161	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	100.55	77.22	110.67	88.89	104.73	135.78	75.73	93.76	118.21	124.02	167.83	86.15
Merged-chr1-143739617-3	chr1	143739515	143739715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	0.0	NM_023505	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	41.99	45.78	52.48	59.53	67.5	59.58	53.48	69.62	63.92	60.25	75.37	53.57
Merged-chr8-116627999-3	chr8	116627899	116628099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	104992.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	80.76	79.99	65.6	64.35	75.28	115.08	59.46	72.98	129.03	109.46	166.82	62.34
Merged-chr11-29693808-3	chr11	29693709	29693909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194051)	promoter-TSS (NM_194051)	35.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	52.9	44.02	34.8	55.5	49.5	53.31	65.11	42.08	58.81	59.75	86.93	41.35
Merged-chr5-144014908-3	chr5	144014802	144015002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-49.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	46.44	37.48	55.33	40.62	56.87	54.88	28.9	57.93	70.41	55.73	91.45	53.88
Merged-chr19-55256437-3	chr19	55256332	55256532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	L1MB5|LINE|L1	3063.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	32.71	24.15	39.93	35.39	40.09	35.12	38.53	37.46	36.98	21.09	76.38	27.57
Merged-chr17-84118387-3	chr17	84118296	84118496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39736.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	36.75	27.92	67.31	36.6	54.0	57.07	39.2	65.13	41.89	44.19	76.38	28.82
Merged-chr10-5825018-3	chr10	5824919	5825119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019958)	TTS (NM_019958)	-1076.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	22.21	18.11	17.68	11.26	24.14	19.76	17.27	20.24	22.42	26.61	26.13	17.86
Merged-chr13-9191374-3	chr13	9191280	9191480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85145.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	22.21	39.99	27.38	35.8	53.18	44.53	49.83	70.37	48.19	64.77	55.78	46.36
Merged-chr11-99168192-3	chr11	99168105	99168305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13128.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	77.53	56.85	55.9	46.25	62.59	115.08	66.1	43.09	112.31	81.34	117.08	39.16
Merged-chr7-16875117-3	chr7	16875008	16875208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-209.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	354.94	323.21	338.28	349.11	400.51	516.14	305.27	387.59	426.81	496.58	543.18	267.22
Merged-chr7-44528129-3	chr7	44528026	44528226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019866, exon 6 of 6)	exon (NM_019866, exon 6 of 6)	-3457.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	44.42	15.59	19.4	24.94	42.14	40.14	20.59	47.86	24.0	24.6	42.71	25.69
Merged-chr3-16183124-3	chr3	16183012	16183212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-53.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	213.61	178.84	223.62	196.68	172.23	200.06	163.1	201.53	224.42	295.24	293.45	150.37
Merged-chr7-125607985-3	chr7	125607845	125608045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	4516.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	46.03	64.89	74.16	28.96	51.14	122.61	32.55	40.57	78.09	67.78	84.92	30.39
Merged-chr15-6579837-3	chr15	6579753	6579953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	6.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	50.47	27.67	51.91	31.77	40.5	69.93	29.9	47.05	50.35	27.62	46.23	26.0
Merged-chr13-38658613-3	chr13	38658528	38658728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025380, intron 1 of 3)	CpG	400.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	25.44	44.77	38.22	30.97	26.59	31.04	41.19	24.22	23.8	30.63	59.8	28.19
Merged-chr7-126884872-3	chr7	126884750	126884950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	117.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	158.29	133.31	136.34	143.59	144.82	216.68	90.68	124.79	165.22	212.89	199.49	113.4
Merged-chr2-52955286-3	chr2	52955177	52955377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	97409.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	258.03	231.91	290.93	251.78	294.15	370.33	232.85	287.72	272.61	278.67	399.47	162.27
Merged-chr13-9895246-3	chr13	9895137	9895337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-129916.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	34.32	22.64	23.96	28.96	21.68	21.64	25.91	34.88	30.49	22.09	40.2	26.63
Merged-chr11-80154047-3	chr11	80153942	80154142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172133)	promoter-TSS (NM_172133)	-120.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	69.45	65.65	81.0	87.68	114.55	108.81	62.78	88.12	125.29	106.95	117.58	61.4
Merged-chr9-44567834-3	chr9	44567721	44567921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37071.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	61.38	61.12	53.62	59.93	71.59	84.98	51.49	60.87	100.9	131.05	147.23	61.71
Merged-chr2-29772317-3	chr2	29772208	29772408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10780.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	18.57	11.57	20.54	13.67	32.73	35.75	22.92	34.96	32.45	40.17	52.26	26.0
Merged-chr4-83266159-3	chr4	83266051	83266251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58038.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	66.63	62.38	61.61	67.97	72.82	67.1	41.85	69.56	91.46	54.23	94.97	22.56
Merged-chr4-103114738-3	chr4	103114626	103114826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	336.0	NM_001286222	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	65.01	103.38	91.27	94.92	76.91	71.81	76.4	65.83	97.95	138.08	127.63	65.16
Merged-chr18-32880672-3	chr18	32880575	32880775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105779)	promoter-TSS (NR_105779)	-2.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	25.44	19.12	24.53	33.38	36.82	26.97	24.25	39.62	25.77	30.63	40.2	16.92
Merged-chr15-25303228-3	chr15	25303125	25303325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110539.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	46.44	38.99	49.63	30.57	65.87	43.59	51.49	53.33	58.42	70.8	69.34	38.85
Merged-chr7-19282599-3	chr7	19282507	19282707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-17.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	30.28	41.0	39.93	15.69	52.37	58.01	23.92	28.93	59.01	53.73	67.84	30.07
Merged-chr10-34131539-3	chr10	34131444	34131644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3572.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	79.95	73.19	74.73	86.47	74.87	102.22	73.74	88.21	106.01	79.83	90.45	46.05
Merged-chr9-61948205-3	chr9	61948124	61948324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	29.88	28.67	26.24	25.34	20.86	42.33	10.96	18.67	40.32	32.64	46.73	18.8
Merged-chr3-67582766-3	chr3	67582676	67582876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	8.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	96.1	80.74	85.0	86.88	94.91	96.58	65.44	112.21	83.2	92.89	90.95	54.51
Merged-chr19-10790488-1	chr19	10790388	10790588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009852, intron 12 of 12)	L3|LINE|CR1	39570.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	5.65	14.84	26.81	19.31	2.86	3.76	0.66	5.05	1.77	4.02	2.01	2.19
Merged-chr1-65178345-3	chr1	65178248	65178448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	794.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	185.34	168.78	166.57	211.15	161.6	215.42	233.18	238.91	233.27	210.38	280.89	141.6
Merged-chr3-122964502-3	chr3	122964408	122964608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133857, intron 2 of 15)	intron (NM_133857, intron 2 of 15)	19939.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	14.54	20.63	28.52	24.53	23.73	25.4	18.6	32.16	33.63	22.59	30.15	12.84
Merged-chr1-135411161-3	chr1	135411075	135411275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357578, intron 5 of 24)	intron (NM_001357578, intron 5 of 24)	19316.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	48.86	47.54	83.29	63.95	52.77	51.43	37.87	66.56	77.3	48.7	92.46	43.23
Merged-chr10-50634389-3	chr10	50634289	50634489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 4 of 41)	L1M4|LINE|L1	41720.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	48.86	51.56	56.48	27.75	80.18	70.87	44.18	42.2	79.46	72.3	47.23	20.99
Merged-chr15-101259296-3	chr15	101259129	101259329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	40.38	38.99	66.74	50.68	51.14	53.62	44.51	31.18	44.65	30.63	60.3	39.16
Merged-chr7-29043716-4	chr7	29043617	29043817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	39977.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	27.86	29.68	42.21	47.46	36.41	31.67	33.22	28.96	25.96	31.63	30.65	26.94
Merged-chr12-87415573-3	chr12	87415472	87415672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22185.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	23.82	23.64	21.11	28.56	23.73	28.85	15.28	24.25	30.49	30.63	27.64	19.11
Merged-chr15-13435395-1	chr15	13435295	13435495	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-261720.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.83	3.52	10.84	1.61	16.77	4.39	11.29	22.01	4.33	7.03	15.07	2.51
Merged-chr14-120394987-3	chr14	120394856	120395056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	-83505.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	20.19	13.08	36.51	30.57	18.82	30.42	30.89	35.5	35.21	23.1	45.22	18.17
Merged-chr4-53120540-3	chr4	53120431	53120631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	39364.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	182.52	181.85	150.03	198.69	200.46	267.16	180.7	166.07	231.9	256.58	246.22	175.43
Merged-chr10-19939427-3	chr10	19939337	19939537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	4911.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	65.82	46.03	77.01	47.46	73.64	79.96	50.49	71.08	41.3	43.68	42.21	24.75
Merged-chr6-47594337-3	chr6	47594203	47594403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007971, intron 1 of 19)	CpG	727.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	43.21	44.52	45.07	20.91	36.82	65.54	31.22	41.3	42.68	48.2	49.24	17.23
Merged-chr8-84982818-3	chr8	84982712	84982912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4064.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	39.17	27.42	44.5	22.52	42.14	49.86	56.14	59.97	65.89	32.13	67.84	45.42
Merged-chr2-30093842-3	chr2	30093758	30093958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-223.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	100.55	105.14	106.1	121.46	155.87	173.72	100.98	119.97	170.73	188.29	196.47	107.76
Merged-chr8-11476956-3	chr8	11476852	11477052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	-977.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	130.83	153.94	185.4	161.68	114.14	154.28	175.72	146.97	192.16	201.85	238.18	151.62
Merged-chr8-79028094-3	chr8	79028011	79028211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178267)	promoter-TSS (NM_178267)	-326.0	NM_001294279	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	26.25	19.37	19.97	36.6	33.14	26.03	26.24	49.46	34.81	24.1	25.12	17.86
Merged-chr2-132252771-3	chr2	132252674	132252874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011045, intron 1 of 5)	CpG	406.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	61.38	50.31	71.88	60.73	70.37	82.47	54.81	64.32	78.28	81.34	109.54	50.75
Merged-chr16-57536781-3	chr16	57536709	57536909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-12433.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	107.81	82.5	78.72	76.02	98.18	147.69	78.06	107.92	104.44	127.53	120.09	62.97
Merged-chr3-146152444-2	chr3	146152349	146152549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	2275.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	41.19	48.29	45.07	46.66	44.59	47.35	39.2	53.07	0.98	1.0	0.0	1.88
Merged-chr11-93821742-3	chr11	93821650	93821850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	64016.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	41.99	23.64	39.93	35.8	137.46	142.99	120.25	150.73	157.74	178.75	196.47	94.29
Merged-chr12-35131585-3	chr12	35131491	35131691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 20 of 25)	ORR1D1-int|LTR|ERVL-MaLR	63306.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	22.61	19.87	27.38	52.69	34.36	18.5	19.27	37.93	40.12	28.62	46.73	19.74
Merged-chr8-106059416-3	chr8	106059295	106059495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-208.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	186.96	154.94	226.47	174.55	180.41	254.31	172.73	203.78	202.0	234.48	238.18	144.73
Merged-chr2-160152320-3	chr2	160152206	160152406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	135653.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	104.18	102.12	123.22	133.93	124.37	123.23	112.61	145.74	106.41	107.45	128.64	70.17
Merged-chr1-166380126-3	chr1	166380017	166380217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	950.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	56.94	45.28	37.65	29.76	52.37	68.05	51.15	58.12	60.19	44.69	61.81	32.58
Merged-chr7-67380873-3	chr7	67380762	67380962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8004.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	33.52	19.62	19.4	26.14	32.73	39.82	16.61	27.76	32.26	26.61	32.16	18.17
Merged-chr7-145122670-3	chr7	145122569	145122769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85450.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	23.02	22.13	30.23	43.04	28.64	18.19	36.21	54.7	16.33	5.02	10.05	12.84
Merged-chr5-96921225-3	chr5	96921129	96921329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131152)	promoter-TSS (NR_131152)	-43.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	68.24	64.14	83.86	80.84	45.82	79.02	49.16	62.86	100.31	50.71	90.95	57.33
Merged-chr11-117832432-3	chr11	117832330	117832530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027827, exon 3 of 11)	exon (NM_027827, exon 3 of 11)	-6416.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	21.8	38.48	25.1	31.77	45.82	44.21	24.91	28.63	37.96	35.15	34.67	28.82
Merged-chr8-73233599-3	chr8	73233485	73233685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	B4|SINE|B4	119955.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	83.59	60.62	74.73	96.13	64.64	76.2	70.75	103.6	91.66	86.36	126.12	57.95
Merged-chr2-18821752-3	chr2	18821617	18821817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19899.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	52.9	46.53	58.19	65.56	41.32	58.01	50.49	62.92	39.73	28.12	60.3	34.15
Merged-chr2-11553967-3	chr2	11553904	11554104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-75.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	88.43	98.1	90.7	114.22	124.78	125.74	87.03	126.87	113.29	150.63	176.87	94.92
Merged-chr10-10325734-1	chr10	10325634	10325834	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	146580.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.83	3.77	3.99	8.04	30.68	23.52	18.6	23.86	2.36	4.02	2.01	1.25
Merged-chr2-61711707-3	chr2	61711625	61711825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	31.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	86.01	62.88	81.58	68.37	84.68	85.61	66.1	113.58	119.0	108.96	112.56	80.51
Merged-chr18-74268166-3	chr18	74268054	74268254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013594)	promoter-TSS (NM_013594)	-21.0	NM_001357423	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	124.77	136.08	115.23	148.41	168.14	170.58	128.22	192.87	205.34	170.72	246.72	151.31
Merged-chr2-13544501-3	chr2	13544402	13544602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	162.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	77.53	49.05	68.45	60.33	93.68	69.61	90.35	72.59	73.17	67.28	120.6	85.84
Merged-chr14-52009007-3	chr14	52008902	52009102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	5556.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	29.48	25.15	23.96	20.11	29.86	34.81	14.95	37.63	35.01	26.61	48.74	32.58
Merged-chr6-39205424-3	chr6	39205302	39205502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033430, intron 1 of 19)	intron (NM_001033430, intron 1 of 19)	1371.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	32.71	26.41	31.95	29.76	29.46	41.39	28.9	37.65	45.43	34.65	29.65	32.58
Merged-chr7-123170583-5	chr7	123170513	123170713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144925, exon 6 of 24)	exon (NM_144925, exon 6 of 24)	-44253.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	24.23	25.66	25.67	32.18	24.96	43.59	36.21	23.27	28.13	34.14	26.13	19.11
Merged-chr12-87387470-3	chr12	87387364	87387564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	891.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	12.52	20.12	18.25	25.34	22.91	20.38	29.9	20.36	19.87	26.61	40.2	13.16
Merged-chr13-5802388-3	chr13	5802264	5802464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55728.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	53.7	33.2	35.37	40.22	99.82	90.94	45.18	64.54	51.53	55.23	36.18	21.93
Merged-chr1-161131470-3	chr1	161131331	161131531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039482)	promoter-TSS (NM_001039482)	48.0	NM_001039482	226541.0	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	54.11	45.28	46.78	56.31	74.87	71.18	73.41	82.6	60.38	48.2	69.34	50.44
Merged-chr9-40457637-3	chr9	40457532	40457732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-1868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	37.96	33.96	63.32	56.31	21.27	42.65	37.2	69.84	34.22	39.67	63.31	25.69
Merged-chr4-120881229-3	chr4	120881141	120881341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	26442.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	31.9	27.42	32.52	27.75	46.64	51.74	34.21	39.39	57.24	49.71	56.28	30.07
Merged-chrX-21632699-3	chrX	21632606	21632806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-82194.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	32.71	24.65	19.97	23.73	32.73	35.43	29.9	45.11	37.76	28.12	28.64	12.53
Merged-chr14-76757692-1	chr14	76757592	76757792	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2439.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.62	5.28	2.85	0.4	1.23	2.82	6.64	2.07	58.02	52.72	68.34	27.57
Merged-chr7-102065315-3	chr7	102065206	102065406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286689)	promoter-TSS (NM_001286689)	-141.0	NM_001360748	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	22.61	42.76	42.78	39.42	33.96	68.67	50.16	27.67	47.4	49.21	39.7	28.19
Merged-chr1-162388726-3	chr1	162388615	162388815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 2 of 20)	intron (NM_001038619, intron 2 of 20)	89319.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	18.57	40.5	36.51	32.98	27.41	64.6	28.23	33.62	55.86	42.18	46.23	19.11
Merged-chr6-146724883-3	chr6	146724788	146724988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346666)	promoter-TSS (NM_001346666)	-42.0	NM_001346666	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	138.5	117.72	119.8	111.01	140.32	173.72	122.24	120.59	212.82	153.14	180.39	112.15
Merged-chr5-129725051-3	chr5	129724992	129725192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	17.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	54.11	55.84	66.74	68.78	58.91	71.49	37.54	50.19	73.36	97.91	84.92	72.36
Merged-chr13-23738844-3	chr13	23738723	23738923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015786)	promoter-TSS (NM_015786)	16.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	71.88	74.2	79.29	89.29	82.64	71.81	69.09	80.27	92.84	122.01	134.16	77.06
Merged-chr4-122872131-3	chr4	122872046	122872246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 2 of 12)	intron (NM_007598, intron 2 of 12)	13930.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	35.53	37.48	45.64	34.59	50.73	66.79	27.24	35.94	60.19	76.32	80.4	38.85
Merged-chr16-91398755-1	chr16	91398655	91398855	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7480.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	13.33	8.8	10.84	9.25	11.45	10.03	4.98	13.57	16.92	19.08	23.11	10.34
Merged-chr8-11473237-3	chr8	11473161	11473361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4668.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	18.17	15.09	35.37	28.15	20.86	24.15	24.25	30.64	22.62	12.55	36.18	18.17
Merged-chr1-183264301-3	chr1	183264228	183264428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-32732.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	40.38	51.06	49.06	56.31	38.86	47.98	37.87	51.08	58.61	70.8	65.32	35.4
Merged-chr11-32532858-1	chr11	32532758	32532958	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-408.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	44.01	54.83	22.25	15.28	72.0	83.41	28.23	36.84	54.88	56.74	48.24	26.31
Merged-chr6-31109411-3	chr6	31109326	31109526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46333.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	29.07	39.24	59.33	40.22	55.64	41.71	50.49	74.41	77.5	51.72	74.37	51.38
Merged-chr10-28323211-3	chr10	28323116	28323316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	248396.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	26.25	21.38	35.94	52.29	45.0	34.18	22.92	65.41	38.35	24.6	61.81	29.45
Merged-chr6-29212347-3	chr6	29212251	29212451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011829)	promoter-TSS (NM_011829)	-54.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	49.26	40.75	66.74	53.49	51.96	50.8	49.49	69.87	59.79	63.77	93.46	40.1
Merged-chr16-76341880-3	chr16	76341782	76341982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 2 of 3)	RMER15-int|LTR|ERVL	31167.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	46.44	48.8	25.1	45.85	55.23	68.05	30.56	54.34	81.04	67.28	78.89	29.76
Merged-chr2-153214876-3	chr2	153214797	153214997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10544.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	98.12	93.07	111.81	92.1	146.87	162.74	168.41	152.24	161.09	147.12	203.0	100.56
Merged-chr16-4879332-3	chr16	4879220	4879420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	CpG	531.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	19.79	13.08	36.51	26.55	30.27	11.92	26.57	40.77	38.35	34.65	37.18	31.95
Merged-chr15-100443684-2	chr15	100443564	100443764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	20471.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	39.17	46.03	49.06	37.4	0.82	2.2	3.32	0.56	39.93	46.19	59.29	25.06
Merged-chr8-84701378-3	chr8	84701268	84701468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008535)	promoter-TSS (NM_008535)	-89.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	35.53	31.19	27.95	39.42	41.73	26.97	25.91	31.21	35.01	31.13	26.63	26.94
Merged-chr3-20076831-3	chr3	20076754	20076954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355097, intron 10 of 25)	B2_Mm2|SINE|B2	18563.0	NR_105047	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	27.46	26.66	25.67	34.19	33.96	43.59	26.91	28.57	44.84	30.13	63.31	24.75
Merged-chr10-127291203-2	chr10	127291099	127291299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	406.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	50.47	66.4	25.67	22.93	29.05	59.89	24.25	26.55	38.35	63.27	33.67	36.34
Merged-chr2-181581854-3	chr2	181581737	181581937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164597)	TTS (NM_001164597)	136.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	15.34	27.92	11.98	17.7	16.77	16.31	31.89	18.08	19.67	22.59	13.06	21.3
Merged-chr11-5065296-3	chr11	5065211	5065411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	16.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	33.11	18.36	26.81	32.18	30.27	25.09	24.58	46.46	28.13	38.16	59.8	36.34
Merged-chr5-50058997-3	chr5	50058854	50059054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	42.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	27.46	17.86	14.83	23.73	47.46	36.69	53.48	77.08	19.67	15.06	27.13	13.78
Merged-chr4-118179714-3	chr4	118179641	118179841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161823, intron 1 of 21)	intron (NM_001161823, intron 1 of 21)	302.0	NM_172382	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	118.72	75.46	99.26	106.18	122.32	111.63	67.43	108.9	147.12	133.06	160.29	102.75
Merged-chr3-8924926-3	chr3	8924830	8925030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1073.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	46.44	20.63	36.51	50.68	20.46	24.15	33.55	50.66	42.68	21.09	37.18	34.46
Merged-chr2-84800516-3	chr2	84800427	84800627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	1699.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	34.32	44.27	39.93	25.34	25.36	64.6	16.94	28.85	63.53	60.75	38.69	21.93
Merged-chr3-52102113-3	chr3	52102002	52102202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	2904.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	177.27	208.27	257.28	228.05	239.73	231.1	232.52	223.54	226.39	250.05	305.51	175.74
Merged-chr2-101886230-3	chr2	101886161	101886361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029635)	promoter-TSS (NM_029635)	-1.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	50.47	51.81	50.2	55.1	54.82	61.46	59.79	55.15	81.82	85.86	90.45	58.27
Merged-chr2-112454990-3	chr2	112454894	112455094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133749)	promoter-TSS (NM_133749)	-31.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	123.97	129.54	118.65	137.95	118.64	136.09	98.99	168.28	214.59	177.75	185.42	113.4
Merged-chr5-107949840-3	chr5	107949737	107949937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	37240.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	46.03	41.0	61.04	83.66	61.77	46.72	56.14	62.05	63.92	48.2	64.82	31.33
Merged-chr7-19024263-3	chr7	19024166	19024366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	-111.0	NM_001360713	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	133.25	152.68	146.04	146.4	141.14	202.57	136.19	141.7	199.84	185.78	220.59	123.74
Merged-chr4-133159889-3	chr4	133159790	133159990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	29257.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	54.51	62.63	57.05	62.34	63.82	88.11	54.81	60.73	88.51	79.83	84.92	68.29
Merged-chr13-33004628-3	chr13	33004522	33004722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	81.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	119.93	92.31	118.65	106.18	104.32	74.63	72.41	98.69	115.26	93.89	182.9	64.53
Merged-chr10-96371132-3	chr10	96371021	96371221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144914.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	20.59	20.88	26.81	21.32	39.68	25.09	15.28	24.79	29.31	11.55	43.21	18.48
Merged-chr5-113992465-3	chr5	113992358	113992558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 1 of 14)	L1MB8|LINE|L1	1299.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	22.21	30.94	33.66	25.34	31.09	34.18	17.27	30.64	40.52	32.13	48.74	22.24
Merged-chr12-16877339-2	chr12	16877257	16877457	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17621.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	18.98	6.29	14.26	14.88	21.27	20.7	17.61	30.87	15.14	26.61	36.18	18.17
Merged-chr9-62122738-3	chr9	62122637	62122837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039595)	promoter-TSS (NR_039595)	-143.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	143.75	171.54	168.86	143.18	191.05	222.32	107.96	136.12	219.11	209.38	260.29	127.81
Merged-chr19-46486901-3	chr19	46486808	46487008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-14740.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	23.82	25.4	26.24	22.52	47.46	29.79	26.57	34.88	42.88	29.62	37.69	26.0
Merged-chr7-47022717-3	chr7	47022607	47022807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14293.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	107.41	91.05	145.47	106.99	123.96	156.79	148.81	145.74	133.75	132.56	129.64	86.77
Merged-chr9-35117538-3	chr9	35117425	35117625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-661.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	77.93	73.7	98.69	81.24	74.87	128.56	129.21	127.09	109.16	100.92	175.37	66.73
Merged-chr11-6291750-5	chr11	6291655	6291855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361904)	promoter-TSS (NM_001361904)	96.0	NM_001361903	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	98.53	127.78	120.94	142.78	98.59	147.07	137.19	101.83	116.83	138.58	141.2	98.99
Merged-chr13-46727273-3	chr13	46727282	46727482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175749, exon 1 of 22)	exon (NM_175749, exon 1 of 22)	467.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	21.4	37.73	31.95	48.67	13.91	26.65	32.22	23.5	27.73	39.67	34.67	31.95
Merged-chr8-13677141-3	chr8	13677006	13677206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	CpG	481.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	20.59	29.68	30.23	28.15	27.41	25.09	20.26	18.48	26.95	43.18	33.67	23.81
Merged-chr10-19186445-3	chr10	19186345	19186545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	19207.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	119.12	64.39	69.6	64.75	117.82	122.29	80.39	73.93	105.82	86.86	112.56	52.63
Merged-chr16-91433708-3	chr16	91433610	91433810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27475.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	24.23	26.41	26.81	7.64	45.82	42.65	30.23	22.96	29.7	36.15	43.21	26.31
Merged-chr17-17374559-3	chr17	17374464	17374664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025934, exon 1 of 10)	5' UTR (NM_025934, exon 1 of 10)	232.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	39.57	33.45	33.09	31.77	51.55	44.53	28.23	41.78	60.38	55.73	60.3	20.05
Merged-chr17-56717770-3	chr17	56717664	56717864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	2.0	NM_027244	69875.0	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	28.27	23.14	22.25	24.53	27.41	25.4	10.63	22.63	36.19	37.66	48.74	30.39
Merged-chr14-54770575-3	chr14	54770463	54770663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	11323.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	28.27	37.73	70.74	40.22	37.23	51.74	37.2	28.15	82.61	52.22	104.52	64.53
Merged-chr12-35294884-3	chr12	35294789	35294989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99992.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	69.86	69.92	61.04	88.48	114.96	74.63	86.36	97.88	84.97	99.42	101.5	53.57
Merged-chr7-27553159-3	chr7	27553045	27553245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	73.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	58.55	58.35	40.5	90.49	87.14	62.71	44.51	79.26	48.98	56.24	85.42	44.48
Merged-chr8-126884754-2	chr8	126884650	126884850	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35730.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	7.67	4.28	0.57	6.44	18.0	12.54	11.63	9.9	17.7	18.08	20.1	10.34
Merged-chr2-45049479-3	chr2	45049388	45049588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26311.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	156.27	138.59	176.27	151.23	224.6	226.09	140.18	181.35	240.94	246.53	271.84	146.61
Merged-chr18-39519624-1	chr18	39519524	39519724	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32379.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.85	6.29	7.99	10.05	5.73	12.23	4.32	4.79	13.96	9.54	12.06	4.7
Merged-chr17-50504324-2	chr17	50504228	50504428	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5219.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	30.69	44.77	27.38	10.05	26.18	70.55	12.62	10.43	57.24	75.32	41.71	14.41
Merged-chr11-53805972-3	chr11	53805872	53806072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	35499.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	96.51	82.0	91.27	98.14	95.73	164.94	91.35	99.79	165.81	99.42	195.47	73.93
Merged-chr19-5843146-3	chr19	5843037	5843237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2341.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	30.28	20.12	33.09	20.11	33.14	36.37	21.92	37.91	38.35	27.62	58.79	15.66
Merged-chr7-28350681-3	chr7	28350593	28350793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	4.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	182.11	145.13	156.31	148.81	129.69	181.56	133.2	111.48	188.43	215.91	189.94	130.95
Merged-chr7-66355137-3	chr7	66355045	66355245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	26579.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	60.57	50.05	38.22	24.53	46.64	65.22	32.22	23.86	64.71	55.73	58.29	7.21
Merged-chr9-61977475-3	chr9	61977433	61977633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	MER20|DNA|hAT-Charlie	-30734.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	82.78	58.35	88.42	106.58	83.87	79.33	62.78	87.65	57.83	68.29	79.89	50.44
Merged-chrX-136172226-3	chrX	136172131	136172331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168578)	promoter-TSS (NM_001168578)	20.0	NM_001168578	66684.0	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding	41.19	41.75	32.52	26.14	43.77	45.47	29.56	48.5	53.7	51.21	105.52	42.6
Merged-chr18-76930046-3	chr18	76929935	76930135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	8.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	80.76	82.25	118.65	75.21	88.37	89.37	64.11	78.22	132.96	112.97	111.05	118.1
Merged-chr5-66083537-3	chr5	66083442	66083642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	14637.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	35.94	29.93	19.4	26.55	29.46	33.55	16.94	19.68	46.42	48.7	39.19	36.03
Merged-chr7-126200482-3	chr7	126200399	126200599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	2.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	78.34	86.53	73.02	50.27	85.5	87.49	39.53	71.5	134.53	121.51	124.62	53.88
Merged-chr7-31115761-3	chr7	31115673	31115873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008281)	promoter-TSS (NM_008281)	-447.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	65.82	79.73	81.58	66.77	96.96	153.65	107.62	90.84	118.01	128.04	196.97	52.0
Merged-chr5-135489262-3	chr5	135489158	135489358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	CpG	55864.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	44.82	28.42	29.09	25.34	50.73	67.1	42.85	40.12	72.38	37.66	55.27	32.58
Merged-chrM-4391-1	chrM	4291	4491	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											50773.26	44745.57	56731.34	56017.17	45987.32	55890.28	52673.01	72797.25	0.0	0.0	0.0	0.0
Merged-chr4-11254229-3	chr4	11254123	11254323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178112)	promoter-TSS (NM_178112)	36.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	90.45	80.24	74.16	109.0	108.82	122.92	103.31	139.94	109.75	114.98	150.74	69.86
Merged-chr11-69685887-3	chr11	69685750	69685950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023517)	promoter-TSS (NM_023517)	-296.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	16.15	17.61	17.11	12.87	23.73	28.85	15.61	19.54	27.73	35.65	29.65	23.81
Merged-chr8-103577363-3	chr8	103577285	103577485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26414.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	62.99	39.99	143.76	129.51	128.46	111.32	184.69	201.2	108.97	129.54	179.39	132.2
Merged-chr2-30242742-3	chr2	30242634	30242834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	4965.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	36.34	21.88	40.5	29.36	37.23	53.31	20.59	54.98	30.88	18.58	44.22	17.54
Merged-chr6-70792206-3	chr6	70792113	70792313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-38.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	206.74	235.43	235.6	240.11	248.33	305.42	214.58	286.8	277.53	281.18	362.29	192.66
Merged-chr4-102574414-3	chr4	102574330	102574530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4370.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	136.89	121.74	185.97	159.27	189.01	181.25	168.41	161.83	209.87	193.31	301.49	92.73
Merged-chr14-76778437-1	chr14	76778337	76778537	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18306.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.62	3.27	9.13	2.01	2.86	4.39	2.99	1.4	18.1	17.07	22.61	13.47
Merged-chr1-181144283-3	chr1	181144190	181144390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-86.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	48.46	50.05	43.93	49.87	49.5	70.55	37.54	64.21	89.49	88.37	88.44	46.99
Merged-chr1-172241082-3	chr1	172240986	172241186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013734, intron 11 of 22)	intron (NM_013734, intron 11 of 22)	17338.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	33.92	39.74	32.52	46.25	25.36	33.87	32.88	40.79	29.5	26.11	35.17	24.43
Merged-chr10-7212246-3	chr10	7212159	7212359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-22.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	83.59	105.14	115.23	101.35	92.46	128.88	66.43	90.06	106.01	127.03	114.06	64.22
Merged-chr13-38037210-3	chr13	38037100	38037300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	211.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	49.26	48.04	61.04	56.31	68.32	73.38	32.55	54.81	69.43	92.89	98.99	66.41
Merged-chr6-38974052-3	chr6	38973945	38974145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	55059.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	39.57	51.56	51.91	70.38	72.41	58.01	80.72	78.39	49.76	44.69	58.29	72.99
Merged-chr16-18877178-3	chr16	18877071	18877271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	421.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	31.9	25.15	20.54	38.61	15.96	23.83	24.91	13.29	34.03	26.61	32.16	15.98
Merged-chr7-3295862-3	chr7	3295756	3295956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093766, intron 1 of 1)	intron (NM_001093766, intron 1 of 1)	2828.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	63.4	55.84	58.76	77.22	65.05	63.34	37.2	63.7	69.04	55.23	73.36	34.46
Merged-chr1-171917724-3	chr1	171917595	171917795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030710, exon 1 of 8)	5' UTR (NM_030710, exon 1 of 8)	233.0	NM_001347186	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	39.57	20.12	34.8	39.42	27.82	22.58	36.87	44.27	27.93	33.64	26.63	29.76
Merged-chr9-110411687-3	chr9	110411592	110411792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3482.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	16.96	11.82	15.4	27.75	23.32	29.48	10.63	25.93	29.7	34.65	43.72	15.98
Merged-chr13-104178392-2	chr13	104178281	104178481	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	85.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	22.21	10.31	11.41	18.1	14.73	17.87	15.94	19.46	23.01	11.05	27.13	10.65
Merged-chr14-8216324-3	chr14	8216221	8216421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	73.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	39.17	21.63	43.35	30.16	45.41	66.48	50.82	105.45	53.89	48.2	85.42	41.04
Merged-chr10-80751673-3	chr10	80751566	80751766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	-3537.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	188.57	172.05	170.57	185.01	199.64	272.49	140.84	129.28	240.16	243.02	271.84	130.95
Merged-chr8-78821041-3	chr8	78820924	78821124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001191004, intron 1 of 4)	CpG	128.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	60.17	62.63	57.05	57.51	68.32	60.21	54.81	66.84	60.97	64.27	62.81	54.51
Merged-chr5-102498982-3	chr5	102498875	102499075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17584.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	37.96	24.15	45.64	67.17	36.82	42.65	54.81	51.08	62.55	41.67	86.93	41.66
Merged-chr13-37642578-3	chr13	37642492	37642692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-183446.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	52.09	43.77	90.13	78.83	72.0	85.61	83.04	90.87	52.32	61.76	74.37	46.36
Merged-chr16-35981733-3	chr16	35981630	35981830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1633.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	47.24	42.76	30.23	28.56	16.36	21.95	19.93	25.21	20.26	10.04	26.63	29.76
Merged-chr7-118703281-3	chr7	118703195	118703395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	2443.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	121.54	91.81	101.54	84.86	115.37	126.68	100.98	126.08	265.73	292.73	307.52	178.56
Merged-chr16-36673368-3	chr16	36673271	36673471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7294.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	38.76	26.91	68.45	47.06	42.55	53.31	43.51	73.21	43.66	44.69	78.39	32.27
Merged-chr6-71440716-3	chr6	71440591	71440791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-54.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	281.04	287.5	342.27	338.65	349.78	396.04	304.6	319.71	434.29	431.81	529.11	260.32
Merged-chr6-121110329-3	chr6	121110225	121110425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20697.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	51.69	36.72	42.21	62.34	67.5	69.3	67.43	43.6	66.28	101.43	60.8	46.36
Merged-chr17-36083575-2	chr17	36083455	36083655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008199, intron 2 of 5)	CpG-6344	694.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	38.36	25.91	31.38	32.18	0.0	0.0	0.0	0.03	37.76	40.17	29.14	18.48
Merged-chr12-85475146-3	chr12	85475050	85475250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010234, exon 2 of 4)	exon (NM_010234, exon 2 of 4)	1260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	106.2	103.63	58.19	38.21	58.91	110.06	19.6	22.18	82.61	125.53	68.34	28.82
Merged-chr10-120141314-3	chr10	120141208	120141408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028679)	TTS (NM_028679)	-28343.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	17.36	12.07	17.11	18.9	30.27	34.18	23.92	42.5	45.83	30.63	43.72	18.8
Merged-chr9-75408002-3	chr9	75407899	75408099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	1360.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	45.23	32.45	26.81	25.34	56.05	88.11	39.86	45.84	91.66	74.31	109.04	43.86
Merged-chr10-91123431-3	chr10	91123314	91123514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	549.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	21.8	25.4	53.62	23.73	22.91	32.93	42.52	24.42	32.06	32.64	42.71	35.09
Merged-chr10-67696159-3	chr10	67696142	67696342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124283.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	18.98	12.83	28.52	24.53	24.96	24.15	26.91	37.18	33.83	22.09	38.69	27.57
Merged-chr2-131204696-3	chr2	131204609	131204809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5651.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	60.97	61.88	72.45	60.73	85.5	74.0	70.42	53.38	71.0	64.27	76.38	51.38
Merged-chr2-155473867-3	chr2	155473762	155473962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-33079.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	22.21	12.83	19.97	18.1	33.96	17.87	11.96	20.89	35.21	38.66	32.16	25.69
Merged-chr14-103115572-3	chr14	103115471	103115671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 84 of 84)	intron (NM_207215, intron 84 of 84)	-16005.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	41.19	65.65	53.05	26.14	44.59	53.31	19.93	28.63	54.09	37.66	47.23	20.68
Merged-chr16-76363216-3	chr16	76363135	76363335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9814.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	47.24	33.7	46.78	60.33	30.68	53.93	35.21	47.69	33.24	22.09	33.16	15.04
Merged-chr16-4371231-3	chr16	4371153	4371353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49245.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	19.79	12.07	11.98	38.21	20.86	14.11	28.9	47.86	17.31	20.59	33.67	16.92
Merged-chr11-89031378-3	chr11	89031286	89031486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29362.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	17.36	25.66	36.51	25.74	23.32	24.77	24.25	29.33	48.78	60.75	70.85	44.17
Merged-chr18-23430776-1	chr18	23430676	23430876	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15367.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	1.62	1.26	0.0	0.8	5.32	13.17	5.98	8.89	6.69	3.51	3.01	1.25
Merged-chr1-155159159-1	chr1	155159059	155159259	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021433, intron 1 of 7)	CpG	456.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	21.4	11.57	7.42	9.65	10.23	12.86	5.65	8.1	20.06	16.57	24.12	14.41
Merged-chr5-99327260-3	chr5	99327138	99327338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-74311.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	134.46	114.7	130.63	152.03	134.19	168.7	123.24	147.0	152.04	137.58	173.36	95.86
Merged-chr7-28374864-3	chr7	28374756	28374956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2194.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	23.02	23.14	29.66	31.37	29.46	31.98	21.26	24.34	42.29	49.21	37.18	36.03
Merged-chr6-51611854-3	chr6	51611725	51611925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66532.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	38.36	19.12	27.95	57.11	28.64	28.54	20.59	40.23	36.78	42.18	56.28	23.49
Merged-chr1-172478196-3	chr1	172478111	172478311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029612, exon 4 of 4)	exon (NM_029612, exon 4 of 4)	2851.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	14.13	21.38	16.54	23.33	16.77	16.31	15.94	26.19	29.5	21.09	38.69	23.18
Merged-chr15-98937034-3	chr15	98936968	98937168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2678.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	51.28	35.97	21.11	39.82	51.14	37.63	26.91	42.45	45.04	54.73	47.23	27.57
Merged-chr3-96696411-3	chr3	96696316	96696516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146135)	promoter-TSS (NM_146135)	41.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	33.52	19.37	26.81	41.83	40.09	37.0	17.61	38.44	30.49	28.12	40.7	19.42
Merged-chr1-125454684-3	chr1	125454602	125454802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18975.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	21.8	20.12	26.24	24.13	49.5	67.73	31.56	52.26	43.07	44.19	65.32	38.22
Merged-chr11-96765822-3	chr11	96765691	96765891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11764.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	67.43	58.35	79.86	51.88	75.68	94.07	50.16	75.17	98.93	78.33	86.43	58.58
Merged-chr9-7346122-3	chr9	7346097	7346297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	-1177.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	9.29	8.3	10.27	13.67	11.86	15.37	18.6	16.63	11.41	6.03	10.55	8.77
Merged-chr14-45608498-3	chr14	45608400	45608600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	49553.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	31.5	44.52	88.99	29.76	26.59	32.3	21.92	28.77	123.32	104.44	126.12	56.7
Merged-chr2-170321645-3	chr2	170321538	170321738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34723.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	20.59	12.58	22.25	27.35	27.41	18.5	12.62	22.99	25.18	20.59	40.7	16.6
Merged-chr11-87426909-3	chr11	87426812	87427012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-679.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	75.11	70.43	97.55	86.47	50.73	95.95	70.75	50.02	59.79	51.72	77.88	38.53
Merged-chr16-22446090-3	chr16	22446015	22446215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6545.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	21.8	19.12	38.22	21.72	22.09	18.19	17.27	13.23	20.06	20.59	14.57	20.68
Merged-chr2-52924521-3	chr2	52924420	52924620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	66652.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	19.79	14.84	30.8	23.73	42.55	29.79	32.22	28.68	44.84	32.64	34.67	14.1
Merged-chr7-141539886-3	chr7	141539778	141539978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-21.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	114.68	96.59	94.13	106.99	99.82	110.06	55.47	97.63	108.77	74.31	124.11	93.98
Merged-chr1-92973073-3	chr1	92972954	92973154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-65.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	65.41	50.56	98.12	90.9	93.28	87.8	78.39	116.08	120.57	95.4	159.29	68.29
Merged-chr11-86587016-3	chr11	86586917	86587117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-2859.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	193.01	167.52	152.31	167.72	179.6	238.32	153.8	141.28	213.21	246.53	217.07	130.01
Merged-chr1-36554727-3	chr1	36554622	36554822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304329, intron 2 of 14)	intron (NM_001304329, intron 2 of 14)	2835.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	41.99	17.36	27.95	20.51	26.59	30.1	18.93	36.17	37.37	31.63	61.81	22.87
Merged-chr12-103347612-3	chr12	103347514	103347714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8387.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	74.3	60.87	125.5	98.14	60.55	48.6	101.31	95.19	69.82	53.73	87.43	57.64
Merged-chrX-106634986-3	chrX	106634882	106635082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	intron (NM_001033541, intron 1 of 3)	-31303.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	20.19	33.96	56.48	53.09	42.55	48.6	47.83	44.02	26.16	42.68	39.7	25.06
Merged-chr2-102998551-3	chr2	102998441	102998641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74972.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	23.02	28.42	28.52	35.8	55.23	52.37	43.18	55.79	53.5	51.21	72.86	55.13
Merged-chr19-38930901-3	chr19	38930799	38930999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-91.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	29.48	28.42	27.95	44.24	49.91	36.69	29.23	33.59	44.06	34.65	47.74	32.89
Merged-chr7-27329520-3	chr7	27329415	27329615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113549, intron 3 of 29)	CpG	4133.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	54.51	61.12	57.05	39.01	63.0	50.8	45.18	53.97	77.1	76.82	102.0	38.53
Merged-chrUn_JH584304-20694-1	chrUn_JH584304	20594	20794	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	38995.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	27.73	34.65	54.27	26.31
Merged-chr10-58446812-3	chr10	58446714	58446914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-38.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	186.96	157.71	163.15	154.04	151.78	234.87	118.92	137.47	209.87	218.42	201.5	118.73
Merged-chr4-59783940-3	chr4	59783857	59784057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013577)	promoter-TSS (NM_001013577)	-102.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	99.74	109.16	101.54	92.1	133.78	146.44	73.08	111.34	147.71	155.15	172.35	103.69
Merged-chr5-125394372-3	chr5	125394252	125394452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-4335.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	41.99	33.7	43.35	47.06	59.73	56.13	30.89	40.4	98.15	99.92	95.47	56.7
Merged-chr7-81762885-3	chr7	81762792	81762992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025997)	promoter-TSS (NM_025997)	-61.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	61.78	49.8	41.07	42.23	69.14	47.35	28.9	55.49	97.16	54.23	59.29	52.63
Merged-chr15-102459112-3	chr15	102459021	102459221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-49.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	50.07	54.58	66.74	55.5	54.41	83.72	23.58	51.17	83.99	82.85	73.86	46.99
Merged-chrX-159371987-3	chrX	159371911	159372111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025437)	promoter-TSS (NM_025437)	-167.0	NM_025437	66235.0	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay|eIF-4C	eukaryotic translation initiation factor 1A, X-linked	protein-coding	56.53	37.98	60.47	50.27	69.14	76.2	65.11	88.18	83.99	64.27	115.07	48.24
Merged-chr8-34154558-3	chr8	34154498	34154698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026432)	promoter-TSS (NM_026432)	35.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	151.83	145.13	154.59	154.04	177.55	204.45	128.55	170.27	176.04	183.77	219.58	114.66
Merged-chr7-44246628-3	chr7	44246490	44246690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025880)	promoter-TSS (NM_025880)	-132.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	47.65	60.12	39.93	28.96	33.96	70.55	42.52	32.92	53.7	85.86	45.22	32.58
Merged-chr18-50053416-3	chr18	50053312	50053512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	130.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	87.62	133.56	81.58	65.96	66.68	129.82	48.83	51.5	94.21	137.58	105.02	57.95
Merged-chr12-41024036-3	chr12	41023961	41024161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-29.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	190.59	138.34	126.07	169.33	160.78	186.26	108.95	193.15	244.48	196.83	304.0	132.83
Merged-chr9-7571380-3	chr9	7571277	7571477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-19.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	20.59	16.1	38.79	46.25	48.68	33.87	39.53	51.36	51.53	37.66	71.35	42.29
Merged-chr11-101069992-3	chr11	101069891	101070091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013792)	promoter-TSS (NM_013792)	-103.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	87.22	78.98	99.83	67.57	112.09	102.22	63.78	79.96	130.8	99.42	101.5	71.74
Merged-chr17-42924963-3	chr17	42924866	42925066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48542.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	94.89	74.45	94.13	120.66	80.59	58.95	95.67	91.15	97.56	67.28	148.73	83.02
Merged-chr4-62329534-3	chr4	62329456	62329656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	31040.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	58.95	49.3	62.18	47.06	67.09	78.39	47.5	71.36	65.89	59.25	66.83	43.54
Merged-chr4-46277477-2	chr4	46277369	46277569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66725.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	28.67	22.13	35.94	37.4	32.73	41.39	29.9	48.95	1.18	1.0	1.51	0.94
Merged-chr2-120404142-3	chr2	120404020	120404220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-4.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	66.22	42.26	53.05	70.79	87.14	86.23	32.88	49.29	77.1	84.35	77.38	40.41
Merged-chr3-31134845-3	chr3	31134737	31134937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-15083.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	105.79	60.12	91.27	64.75	70.77	131.07	85.04	85.04	110.93	87.87	110.04	32.27
Merged-chr9-72133346-3	chr9	72133274	72133474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21555.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	33.11	33.96	33.09	27.35	35.59	39.2	34.21	27.59	45.83	45.19	38.19	26.31
Merged-chr1-133856441-1	chr1	133856341	133856541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50732.0	NM_054076	269120.0	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	4.85	6.79	6.85	2.41	4.09	5.02	9.97	9.22	1.97	2.01	5.02	2.82
Merged-chr11-43352022-3	chr11	43351922	43352122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22439.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	42.4	24.4	27.95	63.55	60.14	41.39	25.91	52.15	60.78	36.15	75.87	35.71
Merged-chr6-108571391-3	chr6	108571286	108571486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51781.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	62.99	43.77	69.03	57.51	71.18	93.13	69.76	96.36	60.78	51.21	66.33	44.17
Merged-chr10-78425716-3	chr10	78425612	78425812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007793)	promoter-TSS (NM_007793)	42.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	53.3	66.15	58.19	51.88	64.64	95.95	53.81	62.52	70.81	88.87	73.86	68.92
Merged-chr8-123254216-3	chr8	123254144	123254344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020497)	promoter-TSS (NM_020497)	-22.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	40.38	44.02	39.93	30.16	38.86	36.37	22.26	32.24	55.86	50.21	68.84	32.58
Merged-chr7-45591970-3	chr7	45591830	45592030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16754.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	81.16	75.21	70.17	47.46	126.0	118.53	41.19	32.1	129.42	93.89	103.51	48.56
Merged-chr4-115839167-3	chr4	115839083	115839283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-15.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	81.57	64.39	87.85	75.61	107.59	88.74	61.45	68.52	119.0	114.98	142.71	68.61
Merged-chr2-44956455-3	chr2	44956338	44956538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66739.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	128.0	120.23	110.67	119.45	140.73	188.46	146.82	126.0	185.67	190.8	204.51	70.48
Merged-chr2-73547435-3	chr2	73547336	73547536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17949.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	30.28	29.68	45.64	22.52	29.86	51.11	52.48	39.36	37.57	30.13	50.25	34.15
Merged-chr17-84466258-3	chr17	84466182	84466382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183021)	promoter-TSS (NM_183021)	-74.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	134.46	103.38	104.96	123.07	128.05	137.34	66.43	113.78	152.43	184.27	176.37	93.35
Merged-chr3-36863663-1	chr3	36863563	36863763	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172679, intron 1 of 85)	intron (NM_172679, intron 1 of 85)	557.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	4.04	4.78	2.28	4.02	10.64	10.98	6.98	12.08	9.44	1.0	4.52	6.27
Merged-chr18-77047371-3	chr18	77047258	77047458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	-62.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	79.95	55.08	77.58	68.37	86.73	91.56	66.1	112.07	142.01	108.96	158.78	85.84
Merged-chr2-127270165-3	chr2	127270064	127270264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139308)	promoter-TSS (NM_139308)	-65.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	79.95	91.05	79.29	79.64	110.46	116.96	69.42	87.7	112.31	121.01	154.26	81.45
Merged-chr19-12435107-5	chr19	12435037	12435237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7232.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	102.97	108.16	112.95	86.47	89.59	141.73	159.11	107.05	98.15	100.92	124.11	51.38
Merged-chr1-156718563-3	chr1	156718494	156718694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145413, intron 1 of 7)	CpG	316.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	17.36	16.6	25.1	22.93	21.68	15.99	19.27	14.3	23.01	29.12	20.6	12.84
Merged-chr1-95624527-3	chr1	95624447	95624647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43047.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	63.8	49.55	61.61	47.46	68.73	88.43	49.83	80.08	69.43	40.17	68.34	27.88
Merged-chr13-96670960-3	chr13	96670871	96671071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-35.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	228.95	232.66	323.45	258.61	286.78	293.5	236.84	317.33	318.44	333.4	472.84	198.3
Merged-chrX-94234740-3	chrX	94234664	94234864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153165)	promoter-TSS (NM_153165)	-166.0	NM_001039059	236904.0	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding	51.69	47.04	49.06	39.42	40.5	69.93	54.81	43.63	51.53	66.78	57.79	39.47
Merged-chr2-11332661-3	chr2	11332554	11332754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6835.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	39.57	26.66	31.38	32.58	44.59	53.31	48.16	71.08	46.81	36.15	65.32	47.62
Merged-chr13-17960829-2	chr13	17960735	17960935	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16618.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	4.85	5.03	11.41	21.32	22.5	12.86	21.92	29.22	21.64	18.08	27.64	17.23
Merged-chr7-79884144-3	chr7	79884045	79884245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009682, intron 4 of 5)	L1MB2|LINE|L1	-35935.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	59.76	57.1	32.52	37.0	39.68	63.66	47.83	41.47	74.94	56.24	71.86	26.31
Merged-chr7-28347946-3	chr7	28347841	28348041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2748.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	23.82	17.36	34.8	32.58	29.86	38.57	22.92	38.55	39.73	32.64	46.23	26.0
Merged-chr9-45300592-3	chr9	45300469	45300669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18531.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	111.85	81.5	94.13	82.45	93.68	130.13	69.42	69.08	133.35	115.48	88.44	76.44
Merged-chr3-63929315-3	chr3	63929195	63929395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357824)	promoter-TSS (NM_001357824)	177.0	NM_177856	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	68.24	79.23	51.91	86.47	103.91	101.6	126.56	127.54	95.59	102.43	127.13	78.0
Merged-chr13-52042066-3	chr13	52041959	52042159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54682.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	30.28	24.9	35.94	46.25	42.96	33.55	28.9	51.65	56.25	47.2	67.33	31.01
Merged-chr7-16049665-3	chr7	16049512	16049712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22233.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	26.65	36.47	23.96	23.33	33.14	58.64	53.81	33.7	12.39	15.57	14.07	14.72
Merged-chr4-126096636-3	chr4	126096544	126096744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	-9.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	105.39	77.22	83.29	86.88	94.09	132.33	70.42	84.76	147.52	144.1	194.96	88.34
Merged-chr7-25250804-3	chr7	25250717	25250917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-59.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	95.3	83.0	85.57	68.78	85.91	102.85	47.5	67.01	101.69	127.53	146.22	67.35
Merged-chr10-18022476-3	chr10	18022354	18022554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	636.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	16.56	26.66	19.4	21.32	28.23	24.46	20.26	25.04	36.78	32.13	50.75	19.74
Merged-chr1-181151356-3	chr1	181151241	181151441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030131, intron 1 of 4)	CpG	410.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	17.77	22.39	13.12	19.71	18.82	23.83	26.24	9.98	17.51	28.62	14.07	9.4
Merged-chr18-20741678-3	chr18	20741582	20741782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4722.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	30.69	31.69	26.81	16.89	48.68	78.39	53.15	56.92	35.99	38.16	56.28	17.23
Merged-chr2-132094626-3	chr2	132094548	132094748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 2 of 6)	intron (NM_001355431, intron 2 of 6)	50460.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	135.68	127.27	140.9	139.56	137.05	154.59	102.64	145.04	156.76	150.63	152.25	113.09
Merged-chr11-97718540-3	chr11	97718438	97718638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	15104.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	51.28	31.69	35.37	33.38	25.77	60.21	43.51	39.53	32.85	32.64	40.7	24.12
Merged-chr4-101653628-3	chr4	101653547	101653747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 2 of 3)	MTD|LTR|ERVL-MaLR	5864.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	17.36	16.85	18.83	32.18	36.0	15.05	34.21	38.22	22.42	19.58	29.14	15.35
Merged-chr9-116139739-3	chr9	116139638	116139838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	35625.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	28.27	34.21	30.23	45.05	40.5	29.79	30.89	55.32	49.17	35.15	53.77	36.65
Merged-chr2-66210089-3	chr2	66209996	66210196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290669, exon 20 of 28)	exon (NM_001290669, exon 20 of 28)	46521.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	19.79	17.86	28.52	17.29	15.96	15.99	14.95	31.35	17.9	19.58	20.1	15.98
Merged-chr7-80198469-3	chr7	80198405	80198605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	64.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	56.13	61.37	77.01	43.04	45.82	42.96	45.51	68.24	41.89	37.16	46.23	29.13
Merged-chr13-13954484-3	chr13	13954373	13954573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362404)	promoter-TSS (NM_001362404)	-201.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	279.83	298.56	305.76	315.32	330.56	379.42	330.18	451.29	438.22	441.35	555.75	282.88
Merged-chr1-156471282-3	chr1	156471213	156471413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3015.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	58.55	38.48	50.2	46.66	40.5	54.56	29.23	50.5	74.74	45.69	69.34	42.29
Merged-chr5-29735883-3	chr5	29735756	29735956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-42.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	48.05	64.89	34.8	45.45	47.05	72.44	32.55	38.66	55.66	81.84	59.8	36.97
Merged-chr5-139372278-3	chr5	139372174	139372374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	CpG	-2529.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	83.18	69.42	44.5	63.95	82.23	98.78	78.39	86.55	97.36	95.4	91.45	57.64
Merged-chr19-8829848-3	chr19	8829726	8829926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081196, exon 11 of 14)	exon (NM_001081196, exon 11 of 14)	-7641.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	32.3	22.39	43.93	39.01	34.36	40.76	48.5	38.94	31.27	21.09	37.69	16.6
Merged-chr6-33837037-3	chr6	33836916	33837116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-192432.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	34.32	35.21	49.06	37.81	48.27	47.66	47.5	29.86	59.79	56.24	58.79	38.85
Merged-chrX-68679177-3	chrX	68679078	68679278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033481)	promoter-TSS (NR_033481)	637.0	NM_001290424	14265.0	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	6.06	10.56	6.85	14.88	21.27	9.09	12.29	12.2	20.06	16.07	18.59	18.48
Merged-chr4-136310910-3	chr4	136310789	136310989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028871)	promoter-TSS (NM_028871)	-53.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	55.32	74.45	53.05	76.82	97.37	102.54	46.5	67.43	109.56	118.5	111.55	83.64
Merged-chr11-120305258-3	chr11	120305158	120305358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	42155.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	50.47	48.29	65.03	48.67	84.28	79.65	32.22	52.79	86.74	72.3	65.32	36.97
Merged-chr10-81266770-3	chr10	81266664	81266864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025317, intron 1 of 2)	CpG	162.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	77.93	72.69	63.89	78.83	63.41	94.7	72.08	52.01	76.31	102.93	68.84	85.21
Merged-chr11-76847040-3	chr11	76846939	76847139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-31.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	47.24	29.68	54.76	34.59	61.37	52.05	25.58	35.38	41.5	56.24	59.29	25.06
Merged-chr16-90143897-3	chr16	90143802	90144002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	1665.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	111.45	140.1	140.33	165.71	160.37	184.38	148.15	208.23	186.26	171.72	277.87	117.16
Merged-chr6-114742405-3	chr6	114742304	114742504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 18 of 19)	intron (NM_001253718, intron 18 of 19)	99307.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	33.11	35.97	56.48	68.78	28.23	37.32	20.59	33.03	38.55	23.6	54.27	34.77
Merged-chr3-127837578-3	chr3	127837476	127837676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346718)	promoter-TSS (NM_001346718)	-53.0	NM_145964	211556.0	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	121.14	110.42	131.78	123.07	146.05	147.38	101.31	143.94	157.94	183.27	221.09	94.92
Merged-chr14-8112147-2	chr14	8112055	8112255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13944.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	12.92	15.59	17.68	12.47	23.73	47.04	36.54	31.29	20.65	48.7	40.2	21.62
Merged-chr14-73222755-3	chr14	73222654	73222854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-15137.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	132.85	94.83	142.04	140.77	103.91	149.89	147.15	132.39	117.23	108.96	118.59	88.34
Merged-chr19-8807040-3	chr19	8806939	8807139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4509.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	25.44	24.65	31.95	36.2	28.64	29.48	24.58	33.34	32.45	28.12	43.21	23.81
Merged-chr19-56744392-3	chr19	56744298	56744498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22026.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	31.09	19.12	34.23	47.06	33.96	36.69	40.52	59.22	37.57	34.65	63.31	37.59
Merged-chr13-98926441-3	chr13	98926325	98926525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-41.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	73.49	55.59	47.35	49.87	53.18	74.94	33.55	72.62	82.61	90.88	89.94	48.87
Merged-chr19-4182051-3	chr19	4181955	4182155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6576.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	104.58	86.53	49.63	71.19	115.78	100.34	34.55	54.22	101.1	78.33	82.41	46.05
Merged-chr7-84688120-3	chr7	84687999	84688199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	-1541.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	24.63	23.64	27.38	16.09	15.55	17.25	11.96	17.83	23.21	24.1	23.62	18.48
Merged-chr2-160361678-3	chr2	160361595	160361795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5370.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	44.82	27.67	38.22	47.06	39.68	38.88	42.52	52.23	29.5	31.63	50.25	18.48
Merged-chr7-126776878-3	chr7	126776780	126776980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026875)	promoter-TSS (NM_026875)	-95.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	92.87	75.21	108.96	81.24	119.05	153.65	94.0	128.69	136.7	125.53	176.37	83.33
Merged-chr7-43671192-3	chr7	43671078	43671278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-853.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	25.84	15.34	36.51	17.29	19.23	29.16	24.91	22.96	27.73	30.63	44.22	22.24
Merged-chr13-112753529-3	chr13	112753439	112753639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47238.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	29.48	18.36	27.38	33.38	31.91	43.59	26.24	47.02	38.35	30.63	51.25	41.35
Merged-chr6-114843047-3	chr6	114842941	114843141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78780.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	44.42	33.2	20.54	22.93	28.64	31.04	20.26	22.04	34.81	36.65	27.13	24.75
Merged-chr11-23305815-2	chr11	23305701	23305901	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1094.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	12.92	13.33	14.26	23.33	13.09	27.59	17.94	22.79	36.39	18.08	28.14	15.04
Merged-chr19-40647698-3	chr19	40647608	40647808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-12062.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	32.3	28.67	35.37	28.56	40.91	33.87	31.89	43.91	40.71	39.67	46.23	19.42
Merged-chr13-112395153-3	chr13	112395059	112395259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68911.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	84.8	104.64	89.56	68.37	75.28	79.96	73.74	76.35	71.0	52.22	83.41	37.28
Merged-chr6-115901261-3	chr6	115901141	115901341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30686.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	54.11	32.7	33.09	61.94	55.64	73.38	50.49	52.85	86.54	54.23	72.86	52.0
Merged-chr3-60472634-1	chr3	60472534	60472734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-196.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	15.34	5.03	4.56	18.1	10.64	5.02	5.65	11.36	15.93	9.54	11.56	8.77
Merged-chr1-52630709-3	chr1	52630626	52630826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	21.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	58.15	61.62	52.48	64.75	64.23	47.04	57.8	72.36	75.13	68.79	103.01	47.93
Merged-chr5-64612241-1	chr5	64612141	64612341	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1542.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	2.83	3.27	5.7	10.46	14.32	2.2	2.99	11.36	3.93	2.01	8.54	8.46
Merged-chr12-17679747-3	chr12	17679656	17679856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11053.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	70.26	75.46	93.55	104.17	92.46	98.15	71.08	106.09	112.9	86.86	131.65	67.67
Merged-chr2-77276319-3	chr2	77276226	77276426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	4266.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	16.96	13.33	36.51	24.53	32.32	43.59	26.24	37.18	32.85	30.13	25.63	15.98
Merged-chr10-82697539-3	chr10	82697435	82697635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1472.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	114.27	80.24	115.8	129.91	108.82	115.39	121.24	144.03	112.31	111.47	170.84	97.43
Merged-chr16-70314220-5	chr16	70314145	70314345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	296.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	104.18	142.36	66.74	114.22	121.09	175.6	191.66	111.56	159.12	174.23	160.29	109.02
Merged-chr11-116767921-2	chr11	116767823	116768023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011371, intron 3 of 8)	intron (NM_011371, intron 3 of 8)	7584.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	22.61	20.88	26.81	24.94	35.59	32.93	16.61	31.74	0.0	1.51	0.0	0.0
Merged-chr3-90213680-3	chr3	90213527	90213727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027015)	promoter-TSS (NM_027015)	20.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	82.78	99.61	63.89	77.22	82.64	107.87	61.12	62.97	110.93	90.38	82.91	56.7
Merged-chr10-80702620-3	chr10	80702517	80702717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-76.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	67.43	58.61	88.42	67.17	83.46	95.64	61.12	71.3	81.04	99.92	99.49	56.7
Merged-chr7-116607298-3	chr7	116607196	116607396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102927.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	21.8	15.09	29.09	32.98	30.27	28.22	17.27	30.25	35.8	21.09	46.73	17.23
Merged-chr2-28591663-3	chr2	28591575	28591775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-8396.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	163.13	137.08	131.78	113.02	145.23	221.38	135.86	107.58	182.33	172.22	193.46	93.98
Merged-chr11-3185940-3	chr11	3185832	3186032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	B1_Mur4|SINE|Alu	7531.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	38.76	35.21	25.1	35.8	39.68	34.18	35.21	32.64	54.68	60.25	54.77	47.93
Merged-chr1-9806081-3	chr1	9805997	9806197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	7967.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	41.99	26.16	45.07	24.53	33.55	28.54	19.27	39.76	49.57	44.19	44.72	27.25
Merged-chr16-73957851-2	chr16	73957748	73957948	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358493, intron 16 of 28)	intron (NM_001358493, intron 16 of 28)	384219.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	8.08	2.01	4.56	5.23	29.46	16.62	36.54	51.73	40.32	21.59	58.29	24.75
Merged-chr13-100104021-3	chr13	100103917	100104117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081061)	promoter-TSS (NM_001081061)	53.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	40.78	45.78	29.09	30.57	45.41	57.07	21.92	33.06	43.27	34.14	29.14	31.95
Merged-chr7-141437656-3	chr7	141437552	141437752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360523)	TTS (NM_001360523)	222.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	29.48	26.16	31.38	47.46	35.18	42.96	26.91	30.11	53.89	35.15	51.76	37.91
Merged-chr5-103760921-3	chr5	103760838	103761038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6365.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	90.05	50.05	85.57	82.45	88.78	74.32	79.39	60.08	86.15	75.82	96.48	55.13
Merged-chr2-129570909-3	chr2	129570824	129571024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-21915.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	37.15	52.82	71.31	21.72	57.68	86.55	35.21	38.66	46.81	68.79	65.32	19.42
Merged-chr17-3115743-3	chr17	3115633	3115833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 1 of 19)	intron (NM_134123, intron 1 of 19)	761.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	30.69	40.24	25.1	32.58	41.73	46.1	39.86	47.52	43.47	41.17	63.31	43.54
Merged-chr2-150904721-3	chr2	150904627	150904827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024465)	promoter-TSS (NM_024465)	4.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	168.79	140.1	172.85	187.43	166.51	164.94	152.13	178.77	217.93	158.16	293.95	140.97
Merged-chr15-9748849-3	chr15	9748711	9748911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177123)	promoter-TSS (NM_177123)	57.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	39.57	35.97	40.5	45.45	50.32	42.33	35.54	53.5	66.87	48.2	81.4	30.7
Merged-chr16-48831511-1	chr16	48831411	48831611	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11041.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	7.67	4.28	6.28	22.12	7.36	6.9	14.28	26.66	4.33	1.51	9.04	10.96
Merged-chr15-50361954-3	chr15	50361849	50362049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	527100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	30.28	16.6	52.48	30.97	16.77	30.73	33.22	37.71	25.77	17.57	18.59	20.36
Merged-chr16-58475028-3	chr16	58474929	58475129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 7 of 10)	intron (NM_001357433, intron 7 of 10)	48397.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	59.76	32.7	48.49	57.51	49.91	76.83	60.46	60.42	44.45	65.27	71.86	33.21
Merged-chr3-135691492-3	chr3	135691399	135691599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008689)	promoter-TSS (NM_008689)	48.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	70.66	86.53	104.96	52.69	76.09	99.72	66.77	50.66	121.55	140.09	144.71	53.88
Merged-chr4-131910077-1	chr4	131909977	131910177	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102393, intron 3 of 4)	RLTR31D_MM|LTR|ERVK	9952.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	6.86	3.02	1.14	0.0	4.09	2.82	9.3	8.72	3.74	3.01	7.54	5.33
Merged-chr16-22436307-3	chr16	22436212	22436412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358428, intron 2 of 12)	(A)n|Simple_repeat|Simple_repeat	2056.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	75.11	49.3	77.58	72.8	81.41	73.69	48.5	66.2	46.62	64.27	57.79	48.56
Merged-chr11-31671934-3	chr11	31671832	31672032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024919)	promoter-TSS (NM_001024919)	-70.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	75.91	98.35	66.17	92.1	99.41	113.2	62.12	103.93	120.37	94.4	152.75	57.95
Merged-chr7-67951747-3	chr7	67951623	67951823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	-534.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	74.3	49.8	53.05	59.53	96.14	85.61	75.73	85.54	58.42	55.23	81.9	35.4
Merged-chr7-45154401-3	chr7	45154262	45154462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278207)	promoter-TSS (NM_001278207)	59.0	NM_001278207	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	70.26	73.19	69.6	61.13	69.96	112.26	51.49	56.66	87.13	121.01	107.03	80.51
Merged-chr4-141139827-3	chr4	141139704	141139904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	-8.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	63.4	66.4	58.76	43.44	85.91	97.83	46.84	51.93	129.42	131.05	117.08	76.75
Merged-chr9-59749078-3	chr9	59748974	59749174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	1575.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	71.47	38.74	61.04	58.72	33.55	44.53	56.8	54.22	47.21	43.68	45.22	32.58
Merged-chr9-36726710-3	chr9	36726556	36726756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007691)	promoter-TSS (NM_007691)	2.0	NM_007691	12649.0	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	19.38	18.11	25.1	14.08	35.59	35.12	13.29	38.07	46.42	58.75	59.29	43.54
Merged-chr17-35917741-5	chr17	35917634	35917834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035445)	promoter-TSS (NR_035445)	-155.0	NR_035445	100316810.0		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA	14.13	12.83	6.28	14.48	13.91	15.05	9.97	15.87	19.08	21.09	11.56	15.66
Merged-chr5-29854600-3	chr5	29854499	29854699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118663.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	37.55	17.1	47.92	37.81	33.55	29.79	45.51	65.38	29.9	29.12	35.17	23.81
Merged-chr11-96777672-3	chr11	96777585	96777785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163389)	promoter-TSS (NM_001163389)	-130.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	196.24	196.44	183.69	188.23	205.78	265.28	156.45	166.6	252.15	232.98	234.16	141.6
Merged-chr1-152902437-1	chr1	152902337	152902537	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160257, intron 1 of 23)	CpG	208.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	20.59	23.9	30.23	19.31	29.46	25.4	14.95	18.56	36.19	32.64	22.11	32.58
Merged-chr4-63399370-4	chr4	63399238	63399438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1098.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	50.88	41.75	41.07	37.81	49.5	63.34	83.71	54.79	62.55	69.29	70.35	36.34
Merged-chr14-118578078-3	chr14	118577984	118578184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 18 of 29)	ORR1E|LTR|ERVL-MaLR	14388.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	35.13	23.9	57.62	59.93	43.36	49.54	43.18	90.08	33.24	22.59	66.33	22.24
Merged-chr11-114745345-3	chr11	114745243	114745443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	17931.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	43.21	37.73	37.08	46.25	38.05	38.57	22.92	38.5	53.3	49.71	64.32	24.12
Merged-chr18-62478334-1	chr18	62478234	62478434	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65518.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	1.62	0.0	0.0	0.8	0.82	0.0	0.0	0.0	20.65	21.09	31.15	20.68
Merged-chr11-75588123-3	chr11	75588031	75588231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	52.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	76.32	69.17	62.18	73.6	78.96	89.05	48.5	70.93	79.07	94.4	94.97	53.57
Merged-chr10-85917109-3	chr10	85917005	85917205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302886)	promoter-TSS (NM_001302886)	-119.0	NM_001302886	72843.0	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	192.61	203.74	188.82	178.98	207.01	236.12	174.06	241.85	261.6	241.51	311.04	144.73
Merged-chr2-68472105-3	chr2	68472008	68472208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016866)	promoter-TSS (NM_016866)	-127.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	38.76	26.41	21.68	27.75	39.68	38.88	27.24	40.71	28.32	40.17	70.85	25.69
Merged-chr19-60598424-3	chr19	60598313	60598513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17390.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	33.52	18.61	20.54	33.38	61.77	80.27	56.8	68.94	68.64	61.26	57.79	41.04
Merged-chrX-12135227-3	chrX	12135117	12135317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 3 of 3)	intron (NR_045434, intron 3 of 3)	25129.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	53.3	50.05	74.16	33.78	50.32	52.05	38.2	58.96	43.27	57.74	69.85	43.86
Merged-chr13-3611164-3	chr13	3611060	3611260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134063)	promoter-TSS (NM_134063)	-52.0	NM_001360838	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	242.28	243.73	241.87	262.64	246.69	332.7	212.59	238.37	384.53	376.58	404.5	184.2
Merged-chr5-117133593-3	chr5	117133503	117133703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183306)	promoter-TSS (NM_183306)	15.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	34.32	26.16	27.38	19.31	32.32	37.94	24.91	32.27	30.29	25.61	46.23	23.81
Merged-chr1-191026265-3	chr1	191026169	191026369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198025)	promoter-TSS (NM_198025)	-79.0	NM_198025	226844.0	Mm.134053	NM_198025	ENSMUSG00000066595	Flvcr1	9630055N22Rik|FLVCR|Mfsd7b	feline leukemia virus subgroup C cellular receptor 1	protein-coding	172.02	172.05	250.43	202.31	180.01	213.86	141.5	211.77	188.62	184.27	228.63	109.33
Merged-chr13-83572150-3	chr13	83572044	83572244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347566, intron 1 of 10)	intron (NM_001347566, intron 1 of 10)	-1463.0	NM_001347577	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	112.66	101.62	151.17	189.03	94.09	81.84	77.4	127.82	101.29	80.34	154.76	56.07
Merged-chr8-27175219-3	chr8	27175134	27175334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-588.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	76.72	71.94	89.56	80.44	87.55	124.8	82.05	116.58	140.63	102.43	149.74	83.64
Merged-chr2-5895413-3	chr2	5895304	5895504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356411)	promoter-TSS (NM_001356411)	28.0	NM_021305	57743.0	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	134.46	135.07	120.37	106.58	132.14	161.8	102.64	121.35	139.26	155.15	218.08	91.79
Merged-chr15-103307352-3	chr15	103307237	103307437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030720)	TTS (NM_030720)	3101.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	30.69	33.45	19.97	24.94	25.36	31.98	16.94	20.92	45.24	54.23	31.15	30.07
Merged-chr3-146499744-3	chr3	146499607	146499807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	46.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	119.93	117.46	124.36	101.35	173.46	138.91	108.95	123.34	201.41	195.32	256.27	118.73
Merged-chr11-103383735-3	chr11	103383642	103383842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 5 of 11)	L2a|LINE|L2	-20050.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	76.72	72.94	83.29	67.57	90.82	74.0	66.77	84.53	76.51	86.86	115.57	61.4
Merged-chr11-117810744-4	chr11	117810652	117810852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	1085.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	18.57	17.1	20.54	14.48	14.73	15.37	19.6	9.81	23.6	19.58	21.61	16.29
Merged-chr11-48817269-4	chr11	48817145	48817345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	146.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	78.34	127.27	113.52	98.94	106.37	113.83	125.89	88.15	84.38	112.97	106.53	87.71
Merged-chr9-119895456-3	chr9	119895332	119895532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026236, intron 1 of 18)	CpG	537.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	18.98	30.43	15.97	4.02	7.36	33.24	11.96	15.95	43.66	33.14	25.63	11.28
Merged-chr1-181881779-3	chr1	181881695	181881895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39394.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	30.28	24.4	37.65	35.8	34.36	27.28	21.92	40.23	37.76	35.65	29.14	20.05
Merged-chr4-105164237-3	chr4	105164138	105164338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6891.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	80.36	62.13	109.53	116.24	50.32	32.61	38.53	70.35	77.89	62.76	80.9	41.35
Merged-chr12-69401206-3	chr12	69401090	69401290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29040.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	69.86	40.5	69.6	70.38	83.87	88.43	61.12	93.11	54.88	38.66	89.44	48.24
Merged-chr5-65724511-3	chr5	65724411	65724611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26655.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	57.74	66.65	116.37	83.66	87.96	87.49	54.81	69.39	80.45	86.86	103.51	55.45
Merged-chr19-23135044-3	chr19	23134940	23135140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6186.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	39.57	24.15	23.39	23.33	102.28	146.12	118.59	111.14	99.52	138.08	164.31	70.48
Merged-chr6-38876343-3	chr6	38876262	38876462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-172.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	50.07	35.21	38.22	30.97	36.82	52.68	29.9	34.29	61.76	53.73	69.85	30.7
Merged-chr19-5692782-3	chr19	5692692	5692892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3661.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	28.67	24.9	26.81	22.12	47.05	20.7	21.26	23.02	36.98	26.11	30.15	20.36
Merged-chr11-26452853-3	chr11	26452740	26452940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102382, intron 7 of 11)	intron (NR_102382, intron 7 of 11)	65756.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	23.02	19.87	18.83	20.91	16.36	21.01	22.59	36.39	26.55	38.16	38.69	22.56
Merged-chr3-121546158-3	chr3	121546066	121546266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13822.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	27.86	19.37	34.8	16.89	29.86	39.2	16.61	28.54	59.01	66.78	58.29	39.78
Merged-chr11-118457148-3	chr11	118457055	118457255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-2160.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	92.47	89.29	115.23	135.14	188.19	207.9	141.84	164.08	245.86	218.92	220.59	144.73
Merged-chr2-44962401-3	chr2	44962310	44962510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60767.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	33.52	16.6	20.54	27.75	38.86	30.1	33.55	42.79	46.42	20.59	45.22	20.68
Merged-chr8-113635373-3	chr8	113635265	113635465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-221.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	279.02	329.25	326.3	337.04	314.6	423.95	330.51	370.43	415.21	422.27	531.63	241.22
Merged-chr1-190910459-3	chr1	190910367	190910567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178775, intron 1 of 14)	MIRb|SINE|MIR	1303.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	24.23	14.84	32.52	35.8	20.86	26.65	12.95	30.7	24.19	21.59	29.14	14.72
Merged-chr17-6317524-3	chr17	6317462	6317662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166629)	promoter-TSS (NM_001166629)	-88.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	39.57	42.01	38.22	38.21	47.46	33.24	55.14	23.27	86.54	84.86	103.51	40.1
Merged-chr4-9634329-3	chr4	9634233	9634433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	9384.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	46.03	32.45	47.92	53.09	65.46	48.6	51.49	68.33	50.35	60.75	56.28	46.05
Merged-chr16-91727522-3	chr16	91727400	91727600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	1302.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	58.55	58.1	75.3	57.11	67.91	73.06	41.85	59.22	93.23	101.43	75.87	71.11
Merged-chr8-22701553-3	chr8	22701445	22701645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159774, intron 2 of 21)	Lx8b|LINE|L1	5038.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	52.09	42.26	27.38	17.7	56.46	89.37	33.22	36.93	75.33	88.87	85.42	38.85
Merged-chr19-29805236-3	chr19	29805192	29805392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172836, exon 1 of 8)	exon (NM_172836, exon 1 of 8)	717.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	12.52	13.58	12.55	18.9	18.0	22.58	20.93	23.52	21.64	18.08	14.07	15.98
Merged-chr19-46962398-3	chr19	46962310	46962510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028353)	promoter-TSS (NR_028353)	-59.0	NR_028353	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	24.23	38.74	19.97	31.37	45.0	53.93	24.25	24.62	37.76	52.72	33.16	21.93
Merged-chr11-72690375-2	chr11	72690275	72690475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009671, intron 1 of 24)	intron (NM_009671, intron 1 of 24)	373.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	24.23	20.63	19.97	20.51	19.23	16.62	20.26	14.64	18.69	20.59	19.6	11.59
Merged-chr15-83130081-1	chr15	83129981	83130181	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 6 of 7)	Tigger1|DNA|TcMar-Tigger	-7280.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	12.11	24.4	9.7	14.48	8.18	24.46	10.3	15.76	18.88	18.58	20.6	13.78
Merged-chr19-44248321-3	chr19	44248222	44248422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	45034.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	102.97	108.91	83.86	101.35	125.59	172.15	87.03	95.58	90.67	116.99	117.08	56.07
Merged-chr4-133804636-3	chr4	133804522	133804722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51011.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	57.74	40.24	66.17	61.13	49.91	59.58	46.5	47.72	81.43	67.78	70.35	38.85
Merged-chr12-111430620-3	chr12	111430527	111430727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	-12034.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	70.66	54.33	57.05	57.92	102.68	117.59	91.68	89.1	114.28	109.96	131.65	56.7
Merged-chr2-119674960-3	chr2	119674866	119675066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030112)	promoter-TSS (NM_030112)	-102.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	79.95	62.63	55.9	50.68	57.27	85.61	71.08	65.02	83.4	68.29	70.85	26.31
Merged-chrX-140520390-3	chrX	140520292	140520492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22276.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	72.28	70.93	96.98	123.07	119.87	89.68	88.36	106.82	123.32	82.35	163.81	80.82
Merged-chr6-86772857-3	chr6	86772753	86772953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2261.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	24.23	32.45	37.65	18.5	31.09	49.54	18.93	42.65	51.14	54.73	48.74	21.93
Merged-chr13-23751511-3	chr13	23751406	23751606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	418.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	26.25	18.61	23.96	22.12	19.64	24.15	17.27	16.18	33.83	27.62	52.26	15.35
Merged-chr7-98805055-3	chr7	98804955	98805155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30057.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	98.93	90.55	115.23	124.28	158.73	116.96	164.76	151.46	129.81	135.07	193.96	90.22
Merged-chr5-124629026-3	chr5	124628927	124629127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-25.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	82.78	61.12	59.33	57.11	92.46	98.46	51.82	73.4	102.87	94.4	114.57	65.79
Merged-chr9-96399625-3	chr9	96399520	96399720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35189.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	115.08	134.57	96.98	118.65	96.96	150.2	99.65	92.41	136.89	146.61	127.63	88.03
Merged-chr14-70395270-3	chr14	70395190	70395390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021308, intron 15 of 22)	intron (NM_021308, intron 15 of 22)	33804.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	106.2	92.06	166.0	137.55	168.96	157.1	175.39	180.56	144.37	202.35	226.12	111.52
Merged-chr2-50669477-3	chr2	50669378	50669578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-240206.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	50.47	57.1	46.21	43.84	39.68	63.03	59.79	53.05	71.0	76.32	64.32	32.27
Merged-chr2-45117307-3	chr2	45117218	45117418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355288, exon 1 of 11)	5' UTR (NM_001355288, exon 1 of 11)	124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	29.07	44.52	23.96	28.15	31.09	46.41	30.89	13.54	35.99	45.19	50.25	25.69
Merged-chr10-8757194-3	chr10	8757090	8757290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128880.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	25.84	20.63	34.8	32.98	24.96	34.81	17.27	33.28	53.5	55.73	53.77	26.94
Merged-chr14-73381795-3	chr14	73381680	73381880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	3509.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	57.34	31.44	39.36	72.4	69.96	52.05	78.72	122.94	71.4	33.64	74.87	44.48
Merged-chr19-53038692-3	chr19	53038589	53038789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-35.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	266.1	238.2	272.11	287.57	272.46	341.17	231.52	254.08	304.87	292.73	448.21	203.31
Merged-chr16-70387581-1	chr16	70387481	70387681	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	73632.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.42	7.55	3.42	0.8	4.91	3.45	5.65	11.83	4.72	5.02	8.54	5.01
Merged-chr14-14703159-2	chr14	14703057	14703257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360516, exon 1 of 25)	5' UTR (NM_001360516, exon 1 of 25)	132.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	68.24	64.39	54.76	78.83	52.37	58.64	73.41	65.02	50.75	60.75	42.21	41.35
Merged-chr14-48422200-1	chr14	48422100	48422300	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23923.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.63	0.75	2.28	1.61	8.18	5.96	4.65	1.77	35.8	27.62	41.71	24.43
Merged-chr6-94221869-1	chr6	94221769	94221969	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	URR1B|DNA|hAT-Charlie	15573.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	1.21	0.25	0.0	4.02	13.91	22.89	16.28	16.04	0.2	2.01	5.53	0.94
Merged-chr19-47440217-3	chr19	47440122	47440322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	24189.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	37.55	26.66	34.23	39.42	36.41	35.12	52.15	74.38	19.08	15.06	20.6	27.57
Merged-chr15-25404014-3	chr15	25403918	25404118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	9746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	55.32	55.59	54.19	50.68	37.23	50.17	29.9	34.57	46.22	38.16	45.22	27.88
Merged-chr8-11555965-3	chr8	11555871	11556071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-92.0	NM_001302457	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	211.99	229.65	186.54	203.51	216.01	284.41	211.26	206.44	309.0	306.79	415.05	185.14
Merged-chr14-50930473-3	chr14	50930422	50930622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310507, intron 1 of 5)	CpG	327.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	28.27	22.13	38.79	21.32	33.14	52.68	33.22	53.16	35.01	40.17	31.66	31.95
Merged-chr18-61452001-3	chr18	61451923	61452123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32584.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	75.11	68.92	70.17	55.91	98.59	113.2	53.15	54.42	108.38	99.92	129.14	49.5
Merged-chr11-75531615-3	chr11	75531529	75531729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-65.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	39.17	26.16	33.66	27.75	45.0	46.1	42.19	44.92	47.8	53.73	41.2	29.76
Merged-chr8-116943380-3	chr8	116943307	116943507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	14.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	51.69	47.79	42.21	47.06	65.46	57.38	29.23	44.55	60.38	55.23	74.87	30.07
Merged-chr14-31392980-3	chr14	31392881	31393081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	24696.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	128.81	84.26	134.06	98.94	153.82	153.34	112.27	156.06	142.4	115.99	140.7	100.56
Merged-chr3-116712224-3	chr3	116712131	116712331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362374)	promoter-TSS (NM_001362374)	49.0	NM_144902	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	22.61	21.88	26.24	34.19	31.09	35.12	36.87	40.07	34.22	24.6	45.22	25.69
Merged-chr13-8713601-1	chr13	8713501	8713701	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001289530, exon 7 of 10)	exon (NM_001289530, exon 7 of 10)	157443.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	2.42	0.5	3.42	3.22	9.0	1.88	5.65	9.73	1.57	0.0	0.0	1.57
Merged-chr6-122598161-3	chr6	122598062	122598262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	4282.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	56.13	44.77	44.5	39.82	59.73	70.55	36.54	48.81	69.63	75.82	85.42	57.01
Merged-chr17-5770448-3	chr17	5770321	5770521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28236.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	44.42	31.44	41.64	42.23	46.23	21.01	39.86	38.41	26.55	28.12	55.78	24.43
Merged-chr10-19591889-3	chr10	19591799	19591999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-50.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	259.64	254.55	236.17	260.63	265.51	310.44	202.29	219.87	282.25	295.74	338.67	147.55
Merged-chr9-45266352-3	chr9	45266281	45266481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106054)	TTS (NR_106054)	326.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	39.17	38.48	21.11	39.42	48.27	62.71	55.14	59.89	51.34	16.07	44.72	23.49
Merged-chr18-60792180-3	chr18	60792118	60792318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11631.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	45.63	42.01	44.5	45.05	43.77	43.9	23.58	44.1	45.43	36.15	48.74	34.15
Merged-chr6-37723552-3	chr6	37723467	37723667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147244.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	19.38	16.6	18.25	20.11	15.55	14.42	4.32	7.99	96.97	92.39	89.94	71.42
Merged-chr1-93754883-3	chr1	93754789	93754989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	-51.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	71.47	75.46	90.13	65.56	68.73	85.61	77.06	97.21	97.16	79.83	147.73	74.56
Merged-chr5-137531087-3	chr5	137530983	137531183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010312, intron 1 of 9)	CpG	-1489.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	66.22	57.6	54.76	37.81	82.23	64.6	26.57	59.1	85.36	73.81	57.79	48.87
Merged-chr2-165992638-3	chr2	165992558	165992758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	21.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	63.4	63.89	76.44	60.33	60.96	55.19	42.52	61.29	98.93	88.87	93.96	55.76
Merged-chr16-91030930-3	chr16	91030821	91031021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152264, intron 7 of 17)	intron (NR_152264, intron 7 of 17)	13458.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	21.8	15.85	19.4	29.36	23.32	26.65	16.94	26.05	33.63	27.62	22.61	10.65
Merged-chr1-53352740-3	chr1	53352646	53352846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001353501)	promoter-TSS (NM_001353501)	6.0	NM_001290984	70396.0	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	144.16	122.24	131.78	155.25	141.55	150.2	94.0	165.81	194.72	179.25	249.73	105.57
Merged-chr4-88439873-3	chr4	88439783	88439983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	-957.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	92.87	67.91	75.87	98.14	90.0	132.95	109.95	140.33	126.47	104.94	179.39	79.88
Merged-chr18-67873676-1	chr18	67873576	67873776	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027556, intron 41 of 45)	ORR1E|LTR|ERVL-MaLR	-59497.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.5	0.0	0.0	0.0	2.2	0.0	0.0	29.9	17.57	33.16	18.8
Merged-chr7-127745469-3	chr7	127745344	127745544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1331.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	44.82	21.88	39.93	32.58	40.91	50.49	21.59	29.75	63.14	44.69	49.75	40.72
Merged-chr18-53261457-3	chr18	53261360	53261560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	15798.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	28.27	18.86	18.83	16.49	27.82	21.64	13.95	28.26	26.16	17.07	17.08	13.16
Merged-chr1-180922527-3	chr1	180922428	180922628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12494.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	26.65	21.13	39.93	39.42	29.46	23.52	20.26	31.88	29.11	37.66	46.73	23.18
Merged-chr1-135691177-3	chr1	135691039	135691239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28924.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	22.21	20.12	19.97	21.32	28.23	31.67	21.26	20.02	14.55	16.57	17.08	13.16
Merged-chr4-139131097-3	chr4	139130986	139131186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	27.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	112.66	72.94	90.13	63.55	101.87	95.33	50.16	74.13	112.7	148.62	104.52	52.32
Merged-chr8-70797478-2	chr8	70797390	70797590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-645.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	47.65	51.81	26.81	49.87	51.96	54.88	51.49	32.61	32.65	46.7	49.75	34.77
Merged-chr6-110040541-3	chr6	110040458	110040658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-604954.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	17.36	14.34	30.23	18.5	40.09	26.65	23.58	39.34	31.27	33.64	31.15	19.74
Merged-chr16-93603924-4	chr16	93603827	93604027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-112.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	26.25	25.15	28.52	24.53	23.73	26.65	26.24	24.48	71.2	93.89	102.0	56.07
Merged-chr16-21595888-3	chr16	21595791	21595991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98774.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	48.86	28.93	56.48	36.6	64.64	87.49	78.72	86.19	43.47	49.71	56.78	39.16
Merged-chr2-167932784-2	chr2	167932693	167932893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	466.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	12.11	6.29	14.83	20.91	24.96	24.77	13.62	13.49	17.11	17.07	22.11	13.78
Merged-chr17-84626493-3	chr17	84626376	84626576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-23.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	29.07	22.89	37.08	32.18	38.46	38.26	29.9	44.07	51.93	51.21	76.88	32.27
Merged-chr2-164866961-3	chr2	164866867	164867067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9259.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	87.62	85.77	102.11	84.46	147.69	142.05	88.03	120.2	115.26	112.47	116.07	103.38
Merged-chr11-23633700-3	chr11	23633595	23633795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-64.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	159.5	137.59	174.56	172.14	177.14	209.15	178.71	241.68	210.46	147.62	285.91	123.43
Merged-chr11-3161344-2	chr11	3161252	3161452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	32111.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	33.11	36.97	26.24	36.6	54.41	29.48	38.2	42.28	2.36	4.02	3.01	2.19
Merged-chr11-70453436-4	chr11	70453353	70453553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151497)	TTS (NR_151497)	1522.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	46.03	53.07	57.05	37.0	58.5	47.35	50.16	39.7	54.88	61.26	53.26	27.88
Merged-chr8-75109474-3	chr8	75109359	75109559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-50.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	138.91	134.82	191.1	139.97	167.73	204.76	107.62	166.18	183.71	170.72	183.41	98.05
Merged-chr19-55658759-3	chr19	55658651	55658851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	43453.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	95.7	73.45	103.25	69.58	118.64	147.38	96.33	136.54	88.9	66.78	100.5	46.36
Merged-chr7-120842816-3	chr7	120842724	120842924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007908)	promoter-TSS (NM_007908)	-7.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	38.36	35.72	38.22	33.38	54.0	37.63	28.23	47.8	62.15	37.66	61.81	37.59
Merged-chr7-30552387-3	chr7	30552278	30552478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-106.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	109.02	111.18	131.21	120.26	168.55	167.76	103.97	169.63	157.74	164.69	167.83	113.09
Merged-chr2-174437444-1	chr2	174437344	174437544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1595.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	17.36	14.59	25.1	14.08	16.36	19.76	13.95	19.32	34.42	27.11	26.63	23.18
Merged-chr7-19267230-3	chr7	19267144	19267344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	PB1D10|SINE|Alu	4610.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	34.73	20.63	44.5	27.35	50.32	32.61	34.55	48.81	58.02	42.68	58.79	33.21
Merged-chr12-44269148-3	chr12	44269047	44269247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-7.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	195.44	169.03	185.4	182.2	211.92	282.84	160.44	251.19	287.36	342.94	373.85	175.12
Merged-chr17-71264947-3	chr17	71264822	71265022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	46089.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	84.39	65.15	104.96	81.24	102.28	138.29	99.98	137.22	43.86	47.2	48.74	31.64
Merged-chr13-111979559-1	chr13	111979459	111979659	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111623.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.4	2.52	0.0	5.23	17.59	7.84	6.64	11.55	5.7	3.01	3.01	6.27
Merged-chr5-139726573-5	chr5	139726456	139726656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	9777.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	42.4	27.42	38.22	20.91	18.0	44.53	43.51	28.63	43.27	62.26	62.31	36.34
Merged-chr6-29247314-3	chr6	29247207	29247407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25181.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	40.78	35.21	49.63	24.53	31.91	36.37	38.86	38.36	62.15	53.22	75.87	31.01
Merged-chr3-61605702-3	chr3	61605616	61605816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241209.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	20.19	23.39	29.66	43.44	35.18	26.34	29.56	46.77	33.04	33.64	19.09	17.54
Merged-chr11-60836667-2	chr11	60836565	60836765	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	6034.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	60.55	52.68	33.55	44.89	63.92	58.75	63.31	60.15
Merged-chr9-58582187-3	chr9	58582114	58582314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-26.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	163.54	143.62	119.23	119.05	149.73	216.05	129.55	110.47	222.26	251.55	207.53	119.35
Merged-chr13-24105499-3	chr13	24105381	24105581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 17 of 37)	MTEa|LTR|ERVL-MaLR	-114267.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	80.76	70.43	96.41	99.75	105.55	139.23	90.35	129.59	108.97	120.0	123.11	70.8
Merged-chr1-60973795-1	chr1	60973695	60973895	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4119.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.85	4.78	14.26	4.83	29.05	15.05	27.9	33.22	10.42	3.51	5.53	11.59
Merged-chr14-32931882-3	chr14	32931773	32931973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59509.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	56.94	54.08	54.19	65.16	39.27	70.24	47.5	50.19	52.91	46.7	57.79	32.89
Merged-chr2-122369177-3	chr2	122369073	122369273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013829)	promoter-TSS (NM_001013829)	-255.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	132.85	115.2	123.22	121.87	139.5	130.76	106.96	169.49	188.03	141.59	246.22	86.46
Merged-chr11-116389392-1	chr11	116389292	116389492	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	23640.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	3.42	0.8	0.0	0.0	1.99	0.0	47.4	48.7	46.73	22.24
Merged-chr7-45635407-3	chr7	45635316	45635516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152217)	TTS (NR_152217)	3342.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	62.99	49.05	37.65	49.47	58.91	76.83	20.93	36.2	75.92	67.78	45.73	47.3
Merged-chr5-21564166-3	chr5	21564080	21564280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	20653.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	67.43	57.85	84.43	74.41	83.05	96.58	79.06	85.29	90.87	84.35	90.45	62.03
Merged-chr13-48872476-3	chr13	48872351	48872551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1566.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	44.82	33.45	33.09	29.76	30.68	36.06	24.91	41.07	34.81	28.62	32.16	16.92
Merged-chr14-20707487-3	chr14	20707388	20707588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252081)	promoter-TSS (NM_001252081)	-64.0	NM_001252081	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	67.43	71.69	37.08	59.53	62.59	96.27	60.79	57.98	78.09	68.29	100.5	68.92
Merged-chr17-10824763-3	chr17	10824656	10824856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	15435.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	20.19	16.85	22.82	31.77	29.46	22.26	18.93	38.13	14.75	17.07	26.13	19.11
Merged-chr17-56626920-3	chr17	56626808	56627008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	-5.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	44.82	48.8	44.5	51.08	62.18	58.32	40.52	39.22	67.86	52.22	42.71	41.04
Merged-chr18-46474912-3	chr18	46474809	46475009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-9093.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	91.26	80.49	99.26	108.19	112.5	139.23	104.63	152.36	99.33	116.49	139.69	68.92
Merged-chr10-78367178-3	chr10	78367049	78367249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-15449.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	17.36	14.84	15.4	20.11	28.64	20.7	11.96	22.4	17.51	23.1	21.61	13.78
Merged-chr2-49452103-3	chr2	49452001	49452201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172663, intron 1 of 13)	CpG	615.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	87.22	116.96	76.44	90.49	116.19	124.49	88.03	84.36	187.05	151.64	147.73	90.22
Merged-chr2-15049317-3	chr2	15049215	15049415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165942)	promoter-TSS (NM_001165942)	-3.0	NM_001355685	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	92.07	88.29	55.9	102.56	84.28	95.01	72.08	127.77	125.49	110.46	204.01	71.11
Merged-chr1-185363732-3	chr1	185363626	185363826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	682.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	39.17	19.87	29.09	23.73	24.55	40.45	26.57	23.27	41.89	34.65	62.31	32.58
Merged-chr13-37462299-3	chr13	37462223	37462423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116978.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	35.94	18.86	33.66	35.8	49.5	35.75	50.49	60.93	18.1	27.11	32.66	21.93
Merged-chr9-65536273-3	chr9	65536175	65536375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43812.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	148.6	124.51	142.61	111.81	154.64	159.92	83.04	106.07	160.69	144.61	182.4	93.04
Merged-chr17-20945665-1	chr17	20945565	20945765	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016891, intron 1 of 14)	CpG	211.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	50.88	50.81	30.8	44.24	47.46	52.37	41.52	50.58	74.35	84.35	64.32	41.04
Merged-chr10-83646524-3	chr10	83646436	83646636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 1 of 20)	Lx8|LINE|L1	2128.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	23.02	22.13	26.81	15.28	33.96	20.07	37.2	60.9	32.45	25.61	30.15	30.39
Merged-chr2-5714482-3	chr2	5714394	5714594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177343, exon 1 of 11)	5' UTR (NM_177343, exon 1 of 11)	268.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	80.76	70.68	128.35	114.63	48.27	43.27	57.47	74.36	41.89	27.62	65.83	45.11
Merged-chr12-111425499-3	chr12	111425409	111425609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028807, exon 6 of 13)	exon (NM_028807, exon 6 of 13)	8064.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	35.13	27.17	29.66	15.69	18.41	30.73	23.58	24.95	27.34	34.65	30.65	17.86
Merged-chr3-90266452-3	chr3	90266368	90266568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	-46.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	42.4	46.53	62.18	44.24	51.96	60.21	51.82	55.99	73.17	54.23	91.45	36.97
Merged-chr1-87621555-3	chr1	87621377	87621577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1165.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	27.46	28.42	41.64	41.83	18.0	32.3	39.86	24.64	22.82	27.62	56.28	41.66
Merged-chr19-5944366-3	chr19	5944237	5944437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	-19521.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	57.74	28.67	23.39	32.18	28.23	60.52	27.57	39.48	55.47	40.17	21.61	12.53
Merged-chr10-78135212-3	chr10	78135089	78135289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34579.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	69.05	47.29	57.05	22.93	53.18	117.28	43.51	25.18	100.31	81.84	64.32	26.0
Merged-chr17-64602168-6	chr17	64602073	64602273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	CpG-6542	524.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	24.63	18.86	22.82	18.1	22.09	22.58	17.94	20.22	25.77	26.61	23.11	15.35
Merged-chr3-8983898-3	chr3	8983754	8983954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19708.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	146.98	115.2	158.59	187.83	161.6	166.82	162.76	209.61	197.67	162.18	305.51	143.79
Merged-chrX-160502209-3	chrX	160502091	160502291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358968)	promoter-TSS (NM_001358968)	29.0	NM_001177878	110094.0	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	36.75	35.97	40.5	47.46	51.96	52.99	37.54	59.72	51.53	71.3	63.31	41.66
Merged-chr4-41348025-3	chr4	41347930	41348130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-966.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	21.0	28.42	40.5	34.99	30.68	21.64	14.95	29.52	32.65	23.1	42.21	28.19
Merged-chr1-171226456-3	chr1	171226360	171226560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131173)	TTS (NR_131173)	1406.0	NM_013474	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	40.78	37.98	46.78	37.81	47.46	38.57	42.19	56.36	56.65	34.14	53.77	28.19
Merged-chr8-108691995-3	chr8	108691891	108692091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22653.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	50.88	57.35	39.93	57.51	58.09	61.77	45.51	39.95	79.86	49.71	52.26	32.89
Merged-chr10-127666962-3	chr10	127666878	127667078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	-145.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	54.92	66.4	79.29	87.68	80.59	56.76	79.39	73.26	136.5	140.09	188.43	85.52
Merged-chr1-52844901-3	chr1	52844794	52844994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-144.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	314.15	353.9	334.29	366.4	347.74	334.9	314.23	391.66	403.21	416.25	630.62	235.58
Merged-chr10-99302258-3	chr10	99302137	99302337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39006.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	67.43	57.6	93.55	72.4	78.96	95.01	95.33	124.29	107.0	104.94	124.11	48.56
Merged-chr10-100840221-3	chr10	100840112	100840312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98577.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	21.8	17.1	27.95	35.8	22.91	33.87	14.95	44.66	30.29	26.61	44.22	24.12
Merged-chr2-25588767-3	chr2	25588663	25588863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-8664.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	31.9	39.99	45.64	41.02	59.73	63.03	56.47	61.15	62.55	67.28	86.93	40.1
Merged-chr11-120350354-3	chr11	120350245	120350445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038126, intron 1 of 1)	CpG	1667.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	87.62	81.5	85.57	86.47	78.96	84.66	61.78	54.59	83.59	83.85	121.1	73.93
Merged-chr16-4879857-3	chr16	4879763	4879963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-12.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	48.05	47.79	47.35	35.8	44.59	78.39	29.56	51.84	72.77	95.9	93.96	59.21
Merged-chr19-5663708-3	chr19	5663553	5663753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	54.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	46.44	50.81	45.07	42.63	54.0	63.34	35.87	33.42	49.76	35.15	54.27	26.31
Merged-chr4-40156296-3	chr4	40156212	40156412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	13047.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	27.46	29.93	39.36	19.31	29.46	47.66	16.61	33.79	50.55	40.67	74.37	29.76
Merged-chr12-104175837-2	chr12	104175742	104175942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21970.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	20.19	20.37	27.38	14.88	5.32	5.96	0.33	1.79	69.04	74.81	83.91	33.83
Merged-chr11-102296351-3	chr11	102296250	102296450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098836, intron 1 of 12)	CpG	279.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	18.17	18.11	22.25	11.66	15.14	32.3	11.63	11.78	25.37	42.68	36.18	19.11
Merged-chr13-83079417-3	chr13	83079306	83079506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-381073.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	47.24	21.38	64.46	50.68	50.32	38.26	55.8	99.67	63.53	53.73	63.82	29.45
Merged-chr17-34187588-4	chr17	34187481	34187681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	25.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	49.26	53.83	37.65	50.68	30.68	52.99	34.88	38.22	68.05	75.32	64.82	44.48
Merged-chr2-170324266-3	chr2	170324226	170324426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32035.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	13.73	8.3	23.96	14.88	11.45	21.95	12.29	19.32	27.54	35.65	26.13	26.0
Merged-chr4-125118136-3	chr4	125118040	125118240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153159)	TTS (NM_153159)	9741.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	71.07	76.97	87.28	76.82	72.82	70.24	63.44	96.2	84.58	63.27	77.88	58.58
Merged-chr17-80128081-3	chr17	80127981	80128181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	610.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	26.25	36.72	43.35	38.21	60.55	62.4	75.4	77.22	54.48	39.16	55.78	37.59
Merged-chr7-100443888-3	chr7	100443738	100443938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 27 of 32)	intron (NM_001017985, intron 27 of 32)	-29153.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	93.68	56.34	74.16	75.21	96.14	102.22	71.75	64.74	92.44	86.36	104.01	58.89
Merged-chr10-96496916-1	chr10	96496816	96497016	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120085.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.48	2.52	8.56	5.63	20.46	10.98	20.59	19.12	2.95	3.01	2.51	7.21
Merged-chr2-32548137-3	chr2	32548038	32548238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12779.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	29.88	25.4	29.09	15.28	44.59	30.1	14.95	22.29	45.83	44.69	40.2	19.74
Merged-chr5-34514012-3	chr5	34513901	34514101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-22.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	101.35	108.66	98.12	100.95	133.37	148.63	99.98	104.69	119.39	149.13	152.75	73.93
Merged-chr4-139156664-3	chr4	139156588	139156788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23967.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	24.63	14.84	29.66	24.53	57.68	40.45	36.87	42.67	35.21	29.12	33.16	15.98
Merged-chr11-106778642-1	chr11	106778542	106778742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_148431, intron 1 of 7)	intron (NR_148431, intron 1 of 7)	824.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	14.94	10.31	5.7	7.24	7.36	9.41	6.64	2.24	15.93	12.55	12.56	6.58
Merged-chr8-36812580-3	chr8	36812468	36812668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-79514.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	36.34	18.86	57.62	44.64	55.64	38.26	64.44	106.09	51.34	54.73	96.48	37.28
Merged-chr7-130648286-3	chr7	130648184	130648384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-44272.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	90.85	79.73	66.74	72.4	66.68	91.25	39.2	66.48	88.51	87.87	125.62	53.57
Merged-chr5-124478375-3	chr5	124478242	124478442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-107.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	76.32	56.85	45.07	49.47	83.05	98.78	36.87	47.89	104.24	102.93	109.54	59.52
Merged-chr10-13501138-3	chr10	13501041	13501241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330198, exon 1 of 8)	5' UTR (NM_001330198, exon 1 of 8)	113.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	109.43	115.95	115.23	92.1	132.55	153.02	86.7	110.92	175.64	148.62	203.0	83.96
Merged-chr16-85133679-3	chr16	85133606	85133806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	40001.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	62.99	37.73	63.89	35.8	70.77	104.42	64.11	64.51	91.66	85.86	131.15	27.25
Merged-chr11-20133129-3	chr11	20133040	20133240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20189.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	56.94	61.37	45.64	32.98	53.18	70.87	35.21	46.71	71.0	61.26	66.33	30.07
Merged-chr16-77013653-3	chr16	77013574	77013774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-395.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	176.05	178.84	171.14	186.62	182.87	248.35	182.03	235.37	310.96	249.04	364.3	149.11
Merged-chr1-165771782-3	chr1	165771682	165771882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 4 of 4)	MIR|SINE|MIR	8024.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	97.72	79.48	116.94	113.02	104.32	145.81	114.27	126.11	137.68	105.44	189.94	79.26
Merged-chr4-135406394-3	chr4	135406309	135406509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8182.0	NM_145555	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	29.07	20.12	18.25	35.39	49.5	28.54	26.24	25.46	23.01	26.11	27.64	17.23
Merged-chr10-91082064-3	chr10	91081954	91082154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027078)	promoter-TSS (NM_027078)	689.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	23.02	12.32	29.09	25.74	18.0	21.95	24.58	27.95	46.81	24.6	53.77	35.4
Merged-chr4-134102587-3	chr4	134102482	134102682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045571)	promoter-TSS (NR_045571)	-1.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	41.59	33.96	32.52	36.2	49.09	73.06	24.58	46.51	58.81	53.22	78.89	42.6
Merged-chr1-151608019-2	chr1	151607915	151608115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	36642.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.25	4.78	27.95	39.42	3.68	0.94	12.95	13.93	1.97	2.01	4.02	1.57
Merged-chr6-87010038-4	chr6	87009957	87010157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020045, intron 1 of 7)	CpG	221.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	22.61	14.34	22.25	17.7	20.46	46.41	59.46	28.26	15.14	16.07	20.1	15.98
Merged-chr4-116651531-3	chr4	116651361	116651561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021473, exon 1 of 9)	5' UTR (NM_021473, exon 1 of 9)	213.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	17.36	20.37	17.11	18.1	13.5	20.07	29.9	19.29	16.72	27.11	28.14	24.12
Merged-chr10-60286785-3	chr10	60286694	60286894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2333.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	44.82	25.4	58.19	48.26	37.64	26.65	53.15	80.08	39.34	20.59	73.86	33.83
Merged-chr14-25484239-3	chr14	25484138	25484338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	25053.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	93.28	74.7	95.27	96.13	126.0	137.34	78.39	121.77	105.42	107.95	141.2	72.05
Merged-chr19-40684267-3	chr19	40684164	40684364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24494.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	144.96	161.23	165.43	166.51	179.19	217.31	150.81	190.49	170.73	181.76	217.07	106.82
Merged-chr16-91891220-1	chr16	91891120	91891320	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 30 of 38)	intron (NM_010587, intron 30 of 38)	40410.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	1.62	1.76	1.14	0.0	0.82	0.31	0.0	0.84	24.0	14.56	21.1	12.22
Merged-chr8-111940637-3	chr8	111940559	111940759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-44.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	61.38	45.78	73.59	76.82	76.5	68.99	43.51	73.15	94.61	102.43	134.67	70.8
Merged-chr15-81361000-5	chr15	81360907	81361107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011399)	promoter-TSS (NM_011399)	-242.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	45.23	33.2	30.23	28.56	41.32	45.78	33.55	32.94	37.57	50.71	44.22	22.24
Merged-chr19-36409669-3	chr19	36409571	36409771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029508, intron 1 of 8)	CpG	30604.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	207.15	213.8	234.46	176.16	236.05	237.69	172.4	213.65	250.58	230.97	304.5	120.29
Merged-chr3-87859980-3	chr3	87859893	87860093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033573, intron 6 of 6)	intron (NM_033573, intron 6 of 6)	13238.0	NM_021309	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	23.42	18.61	28.52	15.28	20.05	26.65	11.96	22.85	33.44	29.62	35.68	15.66
Merged-chr3-115689606-3	chr3	115689509	115689709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25446.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	74.7	61.37	92.98	81.65	79.78	111.95	102.64	102.93	112.9	93.89	111.55	58.27
Merged-chr10-44360750-1	chr10	44360650	44360850	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_035450)	TTS (NR_035450)	1074.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	5.65	3.27	19.4	3.62	4.09	2.2	7.31	15.95	4.52	0.5	10.55	9.71
Merged-chr15-98867514-3	chr15	98867421	98867621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	3684.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	39.57	23.9	20.54	25.74	50.73	64.6	27.9	46.79	38.35	57.74	57.28	23.81
Merged-chr19-4855181-3	chr19	4855084	4855284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019861)	promoter-TSS (NM_019861)	55.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	37.96	36.72	25.67	26.14	28.23	43.9	16.28	22.74	31.27	38.16	30.15	18.17
Merged-chr3-127490177-1	chr3	127490077	127490277	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	URR1B|DNA|hAT-Charlie	8938.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	1.51	2.28	0.0	0.82	0.63	0.0	0.0	71.2	42.18	65.83	46.68
Merged-chr10-78105659-3	chr10	78105564	78105764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	36296.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	58.55	40.75	60.47	45.85	57.27	41.08	28.23	41.66	76.31	41.17	72.36	32.27
Merged-chr15-78406674-3	chr15	78406621	78406821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	9.0	NM_001162493	246221.0	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	22.21	17.86	15.4	22.12	31.09	28.54	15.94	26.83	46.81	53.73	49.75	33.21
Merged-chrX-101274089-3	chrX	101273995	101274195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021521)	promoter-TSS (NM_021521)	4.0	NM_021521	59024.0	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	104.99	104.13	102.68	95.32	111.69	135.46	97.66	129.51	121.55	151.64	149.24	84.58
Merged-chr6-82753220-3	chr6	82753110	82753310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21244.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	49.67	60.37	55.33	24.94	63.82	114.45	69.76	48.03	93.03	60.75	83.91	35.09
Merged-chr8-71676622-3	chr8	71676524	71676724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190830, intron 1 of 23)	CpG	241.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	23.82	36.22	30.23	41.43	28.23	37.0	35.87	26.75	37.96	42.68	39.7	32.27
Merged-chr4-130914162-3	chr4	130914072	130914272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	L3b|LINE|CR1	838.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	96.1	74.2	92.98	70.38	103.09	115.08	96.66	132.03	136.11	111.97	156.27	81.14
Merged-chr14-45664991-3	chr14	45664882	45665082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6839.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	55.32	63.64	47.35	47.06	52.77	87.49	56.8	81.03	91.46	80.84	107.53	52.63
Merged-chr11-77763274-3	chr11	77763203	77763403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13932.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	37.96	35.47	43.35	27.35	46.64	55.5	19.93	35.24	44.84	38.16	26.13	23.49
Merged-chr2-158767900-3	chr2	158767795	158767995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-204.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	138.1	110.42	167.14	143.99	147.69	152.4	104.97	158.83	156.56	119.5	183.91	95.23
Merged-chr13-20787145-3	chr13	20787025	20787225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6988.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	131.64	129.79	114.66	80.44	127.64	216.99	117.59	83.38	153.22	162.18	149.74	63.59
Merged-chr7-92669106-4	chr7	92668963	92669163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	849.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	28.27	22.64	19.4	20.11	17.18	21.64	17.94	19.91	38.94	30.63	34.17	23.81
Merged-chr13-91728073-3	chr13	91727978	91728178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028314, intron 1 of 1)	L1MC4a|LINE|L1	-13443.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	18.98	23.9	41.07	24.94	14.32	28.22	19.93	27.42	32.85	24.6	34.17	18.17
Merged-chr4-154928201-3	chr4	154928147	154928347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-170.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	20.59	18.86	35.37	14.48	29.05	24.46	17.27	18.53	25.18	18.08	28.14	12.53
Merged-chr8-80952444-3	chr8	80952286	80952486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62520.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	115.89	112.43	122.08	84.46	106.78	131.07	78.06	91.35	108.18	97.91	94.47	61.4
Merged-chr2-25500704-3	chr2	25500597	25500797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	-53.0	NM_001356407	30839.0	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	96.1	88.54	77.58	74.41	90.0	106.61	101.98	69.48	108.97	96.91	96.98	82.08
Merged-chr3-54735022-3	chr3	54734912	54735112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	352.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	95.7	70.18	89.56	91.7	116.59	120.1	84.37	107.3	110.93	111.97	148.73	88.03
Merged-chr10-117710767-3	chr10	117710661	117710861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-3.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	113.47	106.4	144.33	101.35	111.28	150.2	109.95	123.48	151.65	157.16	197.98	105.57
Merged-chr11-21031995-3	chr11	21031899	21032099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59325.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	55.72	53.58	22.82	18.9	36.82	102.54	20.26	20.05	70.61	37.66	52.26	18.8
Merged-chr18-10706813-3	chr18	10706717	10706917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	-43.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	14.94	25.91	26.81	27.35	33.55	24.15	27.24	39.31	23.41	21.09	35.17	12.22
Merged-chr11-3167618-2	chr11	3167601	3167801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25762.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	11.31	19.87	14.83	25.74	25.36	31.36	28.57	20.27	1.57	2.51	5.53	2.82
Merged-chr8-122474024-3	chr8	122473919	122474119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2045.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	65.82	54.08	85.0	69.58	108.0	79.02	71.75	86.66	43.27	61.76	78.89	44.8
Merged-chr6-34872038-3	chr6	34871951	34872151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	6014.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	36.75	35.47	48.49	46.25	59.73	44.53	55.47	85.49	48.98	46.19	68.84	24.12
Merged-chr10-93453359-3	chr10	93453249	93453449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313897)	promoter-TSS (NM_001313897)	-47.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	86.01	80.49	70.74	96.13	116.59	107.56	74.07	89.97	139.85	89.88	179.39	82.7
Merged-chr16-36987685-3	chr16	36987585	36987785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	2782.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	39.57	62.13	38.22	22.93	34.77	68.36	21.26	17.94	60.97	59.75	47.23	36.34
Merged-chr5-135009850-4	chr5	135009764	135009964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033794, exon 1 of 5)	non-coding (NR_033794, exon 1 of 5)	408.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	48.86	40.75	37.65	50.27	35.18	46.41	55.47	38.69	53.5	52.22	67.84	45.74
Merged-chr7-142399503-3	chr7	142399401	142399601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11631.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	159.5	118.47	133.49	139.56	159.14	174.03	133.86	160.37	190.98	186.78	183.91	125.93
Merged-chr17-43580725-3	chr17	43580618	43580818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10791.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	38.76	16.1	21.68	26.14	53.59	43.9	40.19	32.75	32.85	40.17	44.22	22.24
Merged-chr7-80014020-3	chr7	80013897	80014097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10817.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	33.11	34.46	31.38	30.57	39.27	36.37	21.26	29.27	48.58	45.19	37.69	23.81
Merged-chr2-168230555-3	chr2	168230508	168230708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	-14.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	49.67	26.41	38.79	39.82	38.86	43.9	19.93	33.56	54.09	61.26	57.28	50.44
Merged-chr12-110974913-1	chr12	110974813	110975013	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3705.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	5.25	4.28	8.56	7.64	3.68	9.72	5.98	12.2	4.33	9.04	11.56	2.51
Merged-chr2-129545668-3	chr2	129545563	129545763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9061.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	27.46	17.1	65.03	38.61	29.05	31.98	32.88	41.33	44.45	30.13	33.16	25.69
Merged-chr8-34965274-1	chr8	34965174	34965374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_175091, exon 1 of 27)	exon (NM_175091, exon 1 of 27)	416.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	8.88	15.59	17.68	29.36	19.23	15.68	20.59	13.99	16.33	15.06	17.08	12.22
Merged-chr11-86577402-3	chr11	86577299	86577499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6759.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	162.73	152.43	160.3	155.25	177.14	216.99	145.82	179.02	191.57	175.74	202.5	117.79
Merged-chr10-118804821-3	chr10	118804729	118804929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64074.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	107.81	100.86	127.78	92.1	132.55	192.53	104.63	139.07	133.75	176.74	191.45	82.39
Merged-chrX-74254692-3	chrX	74254585	74254785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007927)	promoter-TSS (NM_007927)	-2.0	NM_007927	13726.0	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	128.81	135.83	150.03	126.69	132.55	184.69	141.5	149.66	157.35	165.19	188.43	99.93
Merged-chr14-66296984-3	chr14	66296905	66297105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029979)	promoter-TSS (NM_029979)	-20.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	54.11	35.21	34.23	39.42	56.87	54.88	36.54	42.22	54.29	49.21	48.24	34.77
Merged-chr8-95255011-3	chr8	95254875	95255075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195413, intron 25 of 32)	intron (NM_001195413, intron 25 of 32)	51610.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	35.94	28.17	33.66	25.74	40.5	43.59	21.26	46.04	46.42	57.24	63.82	42.92
Merged-chr8-46890471-3	chr8	46890365	46890565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96422.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	48.05	28.67	50.2	34.19	68.73	59.58	28.23	50.44	58.22	40.17	68.84	50.12
Merged-chr2-37423038-3	chr2	37422887	37423087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290642)	promoter-TSS (NM_001290642)	-84.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	105.79	76.46	108.39	74.81	114.55	132.64	56.14	97.54	129.42	157.66	136.17	78.32
Merged-chr5-117159598-3	chr5	117159483	117159683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	ID_B1|SINE|B4	25995.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	47.24	43.51	54.76	28.96	42.96	56.13	17.27	27.7	62.15	54.73	53.77	30.39
Merged-chr1-37541141-3	chr1	37541045	37541245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	-129.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	47.24	49.55	39.36	45.85	72.0	70.55	43.85	61.99	66.87	64.27	80.9	39.78
Merged-chr11-83717256-3	chr11	83717171	83717371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8267.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	70.66	59.61	63.32	30.57	51.14	45.15	23.25	16.74	41.3	49.71	27.13	18.17
Merged-chr10-127596183-3	chr10	127596129	127596329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24919.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	42.8	27.92	35.37	29.76	31.5	30.42	58.79	60.95	47.21	46.19	55.78	34.46
Merged-chr4-32249161-3	chr4	32249064	32249264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168271.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	29.07	21.13	25.1	26.95	42.14	34.18	46.84	54.95	32.45	24.6	29.14	15.04
Merged-chr17-80933790-3	chr17	80933697	80933897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131127)	TTS (NR_131127)	-10835.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	30.28	43.77	67.88	59.53	57.68	49.54	65.11	87.67	86.15	29.62	70.35	52.94
Merged-chr1-138614693-3	chr1	138614592	138614792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	5065.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	53.7	44.52	42.78	40.62	39.68	30.42	28.23	33.73	51.53	39.67	51.25	24.75
Merged-chr1-78488799-3	chr1	78488712	78488912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	85.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	63.4	78.98	53.62	66.77	65.05	95.33	69.76	67.23	67.27	69.79	99.99	39.78
Merged-chr9-109059239-3	chr9	109059129	109059329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012236)	promoter-TSS (NM_001012236)	22.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	137.29	181.1	130.06	111.01	108.82	222.01	98.65	96.95	170.92	211.39	176.37	82.39
Merged-chr15-53400525-3	chr15	53400418	53400618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-54335.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	73.89	48.8	61.04	71.19	80.18	56.44	67.43	87.08	76.31	59.25	89.44	35.09
Merged-chr6-83775854-3	chr6	83775769	83775969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009357)	promoter-TSS (NM_009357)	-57.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	89.64	52.07	59.9	71.59	73.64	69.3	46.84	75.76	62.94	67.78	69.85	56.07
Merged-chr8-35708024-3	chr8	35707921	35708121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118538.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	25.04	14.84	22.82	28.56	31.91	32.61	27.24	31.79	41.7	38.66	66.33	31.33
Merged-chr13-98955388-3	chr13	98955291	98955491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45R|DNA|hAT-Tip100	-29007.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	35.13	23.9	36.51	20.91	38.46	46.72	30.56	49.96	35.01	41.17	58.79	31.01
Merged-chr2-36136752-3	chr2	36136663	36136863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	-59.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	62.18	70.68	55.33	77.22	51.55	79.96	71.42	68.97	85.95	98.41	89.44	69.23
Merged-chr7-46845803-3	chr7	46845711	46845911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	7.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	91.66	81.5	119.23	100.95	107.19	137.34	107.62	122.58	141.22	139.08	188.93	85.52
Merged-chr16-93031796-3	chr16	93031675	93031875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205701.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	39.17	21.38	27.38	31.77	33.55	28.85	23.92	34.65	30.88	34.14	55.27	31.33
Merged-chr14-62858522-3	chr14	62858418	62858618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-7024.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	111.45	138.09	132.35	150.02	101.46	107.56	76.73	105.2	105.42	111.97	147.23	63.91
Merged-chr15-98145660-3	chr15	98145556	98145756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170710)	promoter-TSS (NM_001170710)	46.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	27.46	23.9	18.83	31.37	45.0	24.77	15.94	21.84	47.21	29.12	49.24	18.8
Merged-chr7-25077106-3	chr7	25077009	25077209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168506, exon 2 of 3)	5' UTR (NM_001168506, exon 2 of 3)	302.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	263.27	224.61	247.58	295.21	288.01	340.23	293.64	286.46	286.57	286.7	313.55	168.85
Merged-chr2-25428581-3	chr2	25428466	25428666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007379)	promoter-TSS (NM_007379)	-108.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	60.57	69.92	58.76	41.43	90.82	97.52	35.87	63.9	101.1	75.82	86.93	57.01
Merged-chr15-36933799-3	chr15	36933664	36933864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73638.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	37.96	40.5	67.88	65.16	65.46	67.42	90.35	96.93	61.76	65.27	88.94	49.18
Merged-chr12-40551501-3	chr12	40551409	40551609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	105456.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	26.65	23.14	60.47	27.75	29.05	45.78	31.56	39.39	42.48	48.2	68.34	20.99
Merged-chrM-5812-2	chrM	5725	5925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											39777.51	38331.6	49051.86	48851.98	37214.51	44897.99	38011.65	37317.68	0.0	0.0	0.0	0.0
Merged-chr15-97964656-2	chr15	97964554	97964754	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201359, intron 1 of 7)	intron (NM_201359, intron 1 of 7)	425.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	25.04	16.6	17.11	8.45	34.36	45.78	23.58	22.32	39.53	29.62	34.17	21.62
Merged-chr7-19683894-3	chr7	19683793	19683993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-2433.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	59.36	44.77	75.3	89.69	103.91	95.64	88.03	97.01	83.99	86.86	95.97	67.67
Merged-chr1-179842766-3	chr1	179842655	179842855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38740.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	71.07	83.26	74.16	105.78	108.41	99.72	96.33	111.73	100.51	90.38	101.0	66.41
Merged-chr17-34649880-1	chr17	34649780	34649980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_017406, intron 5 of 17)	(TG)n|Simple_repeat|Simple_repeat	2734.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	41.19	24.4	30.23	30.16	0.0	0.63	0.33	0.36	8.26	2.51	4.52	3.13
Merged-chr11-69995621-3	chr11	69995522	69995722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-144.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	152.63	144.63	123.79	146.8	134.6	186.26	98.99	120.84	213.21	234.99	190.44	132.51
Merged-chr7-17058507-3	chr7	17058404	17058604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1825.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	42.4	32.95	18.83	32.18	40.91	45.47	44.51	43.57	43.27	43.18	64.82	43.54
Merged-chr6-108185472-3	chr6	108185362	108185562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145937, exon 1 of 9)	exon (NM_145937, exon 1 of 9)	121.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	38.76	34.21	22.82	34.99	36.82	38.88	65.44	26.72	38.55	50.71	39.7	28.82
Merged-chr4-137909632-3	chr4	137909523	137909723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 2 of 19)	intron (NM_199307, intron 2 of 19)	47386.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	25.04	19.62	25.67	26.14	37.23	31.04	19.27	30.93	38.16	24.1	30.65	14.72
Merged-chr1-67038835-3	chr1	67038709	67038909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	25.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	47.65	45.02	57.62	85.27	67.5	58.01	64.44	98.47	53.3	53.22	81.9	53.26
Merged-chr2-112265631-3	chr2	112265542	112265742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-672.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	141.73	148.15	140.9	173.75	173.05	185.64	151.47	215.92	176.23	170.21	257.27	116.85
Merged-chr19-21036685-3	chr19	21036592	21036792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68018.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	61.38	52.32	69.03	74.0	75.68	68.67	57.13	84.28	53.5	69.29	101.0	46.99
Merged-chr12-111449462-3	chr12	111449372	111449572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009396, intron 7 of 11)	intron (NM_009396, intron 7 of 11)	6811.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	24.63	17.61	26.24	18.9	35.59	41.08	24.25	47.07	44.65	32.64	39.7	34.46
Merged-chrX-129749635-3	chrX	129749535	129749735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172493)	promoter-TSS (NM_172493)	-107.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	100.14	99.61	90.13	93.31	119.46	153.34	115.93	123.25	137.29	161.68	196.47	87.09
Merged-chr2-181287666-4	chr2	181287591	181287791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 1 of 9)	CpG	275.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	17.77	19.87	19.4	13.67	29.46	29.16	18.27	18.36	52.71	39.67	62.81	31.64
Merged-chr11-51615798-3	chr11	51615711	51615911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3962.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	30.28	11.82	17.68	26.95	26.18	35.43	13.62	22.07	40.91	29.62	42.21	28.51
Merged-chr19-10839697-3	chr19	10839587	10839787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2857.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	22.61	17.86	46.21	15.28	27.0	30.73	24.25	15.17	28.91	36.65	65.32	31.33
Merged-chr19-4019395-3	chr19	4019302	4019502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6647.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	18.57	29.18	19.97	23.33	19.23	34.81	11.29	16.35	23.6	19.58	21.1	24.75
Merged-chr17-71178708-2	chr17	71178593	71178793	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4839.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	18.98	12.32	21.11	20.51	20.05	26.97	22.26	31.46	16.52	27.11	22.61	9.4
Merged-chr16-33418092-1	chr16	33417992	33418192	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	17647.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	5.25	2.26	0.0	2.01	5.73	6.9	14.62	12.42	4.92	0.5	5.53	5.01
Merged-chr6-143114676-3	chr6	143114567	143114767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-14515.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	46.84	40.75	51.34	51.48	51.14	70.87	50.16	105.22	83.79	64.77	84.42	46.68
Merged-chr16-3718154-2	chr16	3718062	3718262	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-38.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.8	17.59	42.96	22.92	29.75	51.14	55.23	55.78	18.48
Merged-chr5-65883584-3	chr5	65883496	65883696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	20027.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	15.75	18.36	20.54	24.53	20.05	20.7	25.91	33.28	19.87	32.64	38.69	22.87
Merged-chr6-47920666-3	chr6	47920591	47920791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001145881, exon 1 of 5)	5' UTR (NM_001145881, exon 1 of 5)	123.0	NM_001145881	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	41.19	56.34	54.19	62.74	46.64	48.92	66.43	50.27	31.47	42.68	33.67	32.27
Merged-chr13-41521498-3	chr13	41521401	41521601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-34141.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	42.8	53.58	82.15	45.85	74.87	93.13	50.16	68.05	59.99	52.22	83.91	59.52
Merged-chr17-35263710-3	chr17	35263628	35263828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267808, intron 6 of 11)	CpG-6316	605.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	37.15	54.08	31.38	39.82	41.73	68.99	42.85	37.46	69.04	64.27	78.89	40.41
Merged-chr4-134000928-3	chr4	134000828	134001028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-64.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	67.03	63.13	59.33	66.36	74.87	106.3	44.84	61.82	115.06	133.56	112.05	89.28
Merged-chr9-110826042-3	chr9	110825949	110826149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199471)	promoter-TSS (NM_199471)	-641.0	NM_199471	272643.0	Mm.458525	NM_199471	ENSMUSG00000058398	Prss43	Gm661|Tessp3	protease, serine 43	protein-coding	35.53	24.4	31.38	25.34	31.91	26.03	16.61	40.93	33.63	23.6	39.7	11.59
Merged-chr2-109890816-3	chr2	109890715	109890915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011699)	promoter-TSS (NM_011699)	-63.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	71.07	61.37	54.19	76.82	99.0	88.74	57.8	100.4	117.62	93.39	154.26	89.28
Merged-chr1-149961108-3	chr1	149960975	149961175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	215.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	21.4	19.37	15.4	23.33	21.27	17.56	27.57	17.52	26.75	22.09	26.63	15.04
Merged-chr8-70538849-3	chr8	70538751	70538951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-824.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	111.04	137.33	101.54	112.21	100.23	146.12	78.06	86.19	184.3	199.34	209.54	101.19
Merged-chr12-80109135-3	chr12	80109039	80109239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007564, exon 2 of 2)	3' UTR (NM_007564, exon 2 of 2)	3874.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	35.94	32.45	31.95	31.37	62.18	49.54	33.88	24.14	58.81	51.21	38.69	25.69
Merged-chr11-61861924-3	chr11	61861823	61862023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6831.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	34.32	30.43	39.93	37.81	40.5	36.69	21.92	40.77	30.09	30.63	32.66	21.93
Merged-chr1-43914719-3	chr1	43914623	43914823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19271.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	66.63	39.24	85.57	74.0	77.32	73.38	98.32	87.93	68.45	44.19	65.83	41.35
Merged-chr3-126628738-3	chr3	126628633	126628833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31782.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	33.92	33.45	37.65	37.4	32.73	36.69	38.53	42.06	37.96	28.12	33.67	20.99
Merged-chr14-19972623-3	chr14	19972533	19972733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	4060.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	31.09	28.17	25.1	28.15	24.14	20.7	26.57	38.47	33.83	29.12	21.1	20.36
Merged-chr13-55528617-3	chr13	55528529	55528729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-91.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	30.69	24.9	38.22	27.75	38.86	31.04	30.23	36.9	28.32	28.62	39.19	18.48
Merged-chr12-73598439-3	chr12	73598340	73598540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	13644.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	35.94	30.94	55.9	38.21	38.86	44.21	32.55	40.85	47.4	59.75	52.26	34.15
Merged-chr14-61648869-3	chr14	61648769	61648969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	CpG	-16759.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	69.45	73.45	70.74	79.64	70.37	85.92	39.2	57.67	95.98	72.3	79.89	48.87
Merged-chr6-17542628-2	chr6	17542526	17542726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 12 of 21)	intron (NM_008591, intron 12 of 21)	78669.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	20.59	22.64	20.54	25.74	19.23	24.46	23.92	45.76	4.33	0.0	6.53	2.19
Merged-chr5-142905974-3	chr5	142905896	142906096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007393, intron 1 of 5)	CpG	758.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	210.78	209.77	190.53	180.59	143.6	252.43	171.73	147.59	260.42	338.92	332.64	219.29
Merged-chr13-17803619-3	chr13	17803512	17803712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	1485.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	29.88	29.93	22.25	33.78	27.0	38.57	22.59	41.66	53.89	40.67	57.79	36.34
Merged-chr5-72914256-3	chr5	72914137	72914337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113423)	promoter-TSS (NM_001113423)	-125.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	180.9	178.58	223.62	217.19	180.41	285.66	188.67	220.29	267.3	352.48	409.02	191.41
Merged-chr7-28440959-3	chr7	28440850	28441050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039192)	promoter-TSS (NM_001039192)	13.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	78.74	76.97	86.71	104.97	111.69	92.5	76.4	86.41	95.0	97.91	137.68	57.33
Merged-chr1-180942459-3	chr1	180942334	180942534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-84.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	21.4	19.87	18.25	22.93	31.09	27.59	13.62	30.0	42.48	39.16	54.77	31.01
Merged-chr17-32091407-3	chr17	32091327	32091527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027316)	promoter-TSS (NR_027316)	-4.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	51.28	44.77	39.93	39.42	47.87	57.07	38.86	46.51	73.36	58.75	80.4	34.15
Merged-chr7-34389282-1	chr7	34389182	34389382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	CpG	423.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	28.27	31.19	34.23	19.31	27.41	21.64	20.93	21.64	21.64	14.06	25.63	21.62
Merged-chr6-15841896-6	chr6	15841777	15841977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121216.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	21.0	10.31	14.26	18.1	21.27	13.48	17.94	20.83	19.47	26.11	18.59	11.9
Merged-chr15-62043952-3	chr15	62043861	62044061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4704.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	19.38	20.88	13.69	20.91	30.68	17.25	27.9	27.45	36.19	33.64	54.27	26.63
Merged-chr4-119174293-3	chr4	119174186	119174386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183140)	promoter-TSS (NM_183140)	-91.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	154.25	122.24	170.0	167.32	162.82	186.26	125.56	202.96	197.67	191.3	285.91	122.49
Merged-chr1-55525310-3	chr1	55525215	55525415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	Lx9|LINE|L1	119369.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	44.01	34.21	57.62	71.19	60.96	64.6	48.16	61.85	71.0	65.27	73.86	51.38
Merged-chr5-147911317-3	chr5	147911215	147911415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16500.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	25.44	18.36	25.1	18.5	39.27	20.07	19.27	35.92	65.3	55.73	89.44	46.05
Merged-chr7-67464810-3	chr7	67464699	67464899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91941.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	26.65	37.48	43.93	39.82	65.87	39.82	29.9	44.19	49.17	32.64	63.82	35.09
Merged-chr5-72203295-3	chr5	72203180	72203380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-49.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	126.39	126.02	102.68	143.99	110.87	143.3	80.05	145.32	135.52	130.55	207.53	77.38
Merged-chr4-122886527-3	chr4	122886428	122886628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-452.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	38.76	45.02	61.04	66.36	51.55	41.71	33.88	39.87	62.74	65.78	79.89	47.93
Merged-chr11-69662760-3	chr11	69662664	69662864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	-115.0	NM_011900	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	115.49	122.49	98.69	100.55	126.0	156.47	106.96	113.36	193.15	148.62	162.8	94.92
Merged-chr13-107831352-3	chr13	107831230	107831430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	58734.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	137.29	110.17	112.95	143.99	119.05	156.16	89.69	142.74	199.84	152.64	293.45	106.51
Merged-chr1-134415413-3	chr1	134415304	134415504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	26.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	148.19	195.94	156.88	160.48	168.96	196.3	143.83	153.87	209.28	230.47	297.97	155.07
Merged-chr10-8870546-3	chr10	8870394	8870594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	15576.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	175.25	132.56	147.18	133.53	173.46	203.2	154.13	155.92	149.09	176.74	137.68	95.23
Merged-chr1-165766052-3	chr1	165765949	165766149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2291.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	35.13	27.17	17.68	33.38	41.32	48.6	39.2	46.77	48.78	57.24	67.33	29.76
Merged-chr3-115887955-3	chr3	115887857	115888057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027193)	promoter-TSS (NM_027193)	102.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	48.46	56.34	67.31	40.22	74.05	105.99	62.45	46.51	67.66	82.35	86.43	39.47
Merged-chr7-3693674-3	chr7	3693584	3693784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	74.0	NM_001164205	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	142.94	108.16	147.18	114.63	105.96	139.54	79.72	132.34	129.42	94.9	165.32	75.18
Merged-chr17-50157941-3	chr17	50157827	50158027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32570.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	41.19	40.24	42.78	14.88	44.18	68.67	21.26	23.24	73.56	77.83	59.29	15.66
Merged-chr2-25634514-1	chr2	25634414	25634614	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6540.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	7.27	3.02	6.28	7.64	2.05	4.7	6.98	10.54	6.1	4.02	10.05	2.19
Merged-chr15-66447571-1	chr15	66447471	66447671	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019457, intron 7 of 11)	intron (NM_019457, intron 7 of 11)	53339.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	3.23	5.03	9.13	4.83	2.86	8.78	3.65	3.5	20.06	16.07	4.52	5.64
Merged-chr8-108894360-3	chr8	108894216	108894416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-42544.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	12.11	11.07	13.69	8.04	20.86	13.8	8.64	18.81	14.75	10.04	26.63	13.78
Merged-chr12-82401663-3	chr12	82401562	82401762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	90313.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	23.82	27.17	18.25	39.01	42.55	51.74	34.21	60.28	42.68	45.69	61.81	29.76
Merged-chr18-42511273-3	chr18	42511168	42511368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110344)	promoter-TSS (NR_110344)	-219.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	255.6	290.01	232.18	273.5	321.15	357.47	334.16	334.09	332.01	408.21	464.29	255.0
Merged-chr7-80837926-3	chr7	80837831	80838031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24177.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	15.75	16.1	27.95	24.13	29.05	26.03	33.55	53.36	34.81	22.59	47.74	23.49
Merged-chr18-37955046-3	chr18	37954944	37955144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	-56.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	78.74	53.32	70.17	66.36	122.32	67.73	60.79	78.03	98.34	126.03	138.18	65.16
Merged-chr11-60115343-3	chr11	60115237	60115437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	CpG	10324.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	102.56	97.34	70.17	67.17	133.37	126.68	95.33	131.1	155.78	127.53	135.17	68.92
Merged-chr12-100839427-3	chr12	100839325	100839525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	60099.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	55.32	34.46	56.48	59.53	40.5	36.37	38.2	50.22	98.34	67.28	98.49	41.04
Merged-chr10-24165862-3	chr10	24165762	24165962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	16545.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	24.63	23.14	43.35	25.34	29.46	31.04	31.22	35.86	34.81	29.62	36.18	26.0
Merged-chr6-115666844-3	chr6	115666747	115666947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9041.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	74.3	80.24	70.17	75.61	115.37	134.84	91.35	94.15	124.5	155.65	101.0	79.88
Merged-chr16-37814446-1	chr16	37814346	37814546	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	37391.0	NM_008047	14314.0	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	8.08	5.03	5.13	10.05	11.45	19.44	4.65	9.64	4.72	4.02	9.55	4.07
Merged-chr12-91765365-3	chr12	91765269	91765469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21067.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	72.28	78.73	96.41	74.0	85.5	117.28	84.37	112.51	137.88	83.85	110.55	42.92
Merged-chr3-65665782-3	chr3	65665683	65665883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166659)	promoter-TSS (NM_001166659)	-445.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	17.36	9.81	28.52	10.05	25.77	29.79	18.27	37.88	43.27	28.62	42.21	28.19
Merged-chr5-105558001-3	chr5	105557915	105558115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	38544.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	233.39	191.66	223.05	198.28	234.01	266.22	118.92	195.48	297.2	286.2	308.02	177.62
Merged-chr8-120682895-3	chr8	120682796	120682996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14576.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	35.13	32.95	36.51	16.89	36.82	69.93	23.92	26.86	52.91	43.18	48.74	18.48
Merged-chr14-103033613-3	chr14	103033516	103033716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 1 of 2)	intron (NR_045657, intron 1 of 2)	187.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	103.37	96.08	122.08	98.54	114.14	180.3	129.55	145.49	168.76	185.78	197.98	93.04
Merged-chr11-109480059-3	chr11	109479956	109480156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5836.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	39.98	31.44	30.8	23.33	30.27	28.85	32.22	25.43	36.39	25.11	39.7	22.87
Merged-chr19-53564416-3	chr19	53564321	53564521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35103.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	57.74	46.03	79.86	78.43	123.14	73.06	102.97	122.64	41.7	32.13	33.16	20.36
Merged-chr15-58015411-3	chr15	58015323	58015523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18871.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	62.99	66.15	108.39	62.34	100.64	108.5	96.33	116.41	113.88	101.43	130.65	93.35
Merged-chr8-84201628-3	chr8	84201495	84201695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6923.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	128.0	113.44	86.71	100.95	143.6	145.5	63.78	80.27	120.57	151.13	123.61	80.2
Merged-chr11-49845361-3	chr11	49845253	49845453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1398.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	11.71	26.91	29.09	20.51	22.09	22.58	16.94	20.78	26.75	25.61	52.76	30.39
Merged-chr4-6357241-3	chr4	6357157	6357357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8423.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	41.19	21.38	38.79	34.59	65.46	72.44	61.12	71.97	79.27	57.24	100.5	47.62
Merged-chrX-20929989-3	chrX	20929870	20930070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008823, intron 2 of 8)	intron (NM_008823, intron 2 of 8)	1585.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	47.24	34.71	53.05	25.74	41.32	56.13	49.49	43.4	53.89	52.22	68.84	32.89
Merged-chrM-2276-1	chrM	2176	2376	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											40691.7	41270.46	44643.37	50681.19	37211.65	44893.91	47420.06	58125.54	0.0	0.0	0.0	0.0
Merged-chr8-126778867-3	chr8	126778773	126778973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-70147.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	31.5	56.09	36.51	35.8	47.46	49.23	50.82	64.82	152.24	138.08	203.0	125.93
Merged-chr8-23256712-2	chr8	23256636	23256836	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001042484, exon 2 of 6)	exon (NM_001042484, exon 2 of 6)	344.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	14.13	15.09	13.69	18.1	18.82	19.44	23.25	10.26	19.08	18.58	27.13	19.42
Merged-chr1-165639732-3	chr1	165639635	165639835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5194.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	37.15	29.93	54.19	44.24	36.0	26.34	33.55	45.65	38.55	45.69	74.87	32.89
Merged-chr6-35539870-3	chr6	35539773	35539973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	15.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	143.35	144.88	175.7	193.86	181.23	190.03	119.91	189.7	209.67	175.74	333.15	149.43
Merged-chr15-27702916-3	chr15	27702807	27703007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21365.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	31.9	27.67	35.37	51.08	49.91	22.89	42.19	57.93	35.21	28.62	47.23	33.52
Merged-chr10-127063460-3	chr10	127063347	127063547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-88.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	144.56	114.19	97.55	121.87	127.23	153.65	91.01	97.54	168.37	169.71	161.8	109.96
Merged-chr10-25359807-3	chr10	25359716	25359916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358755)	promoter-TSS (NM_001358755)	18.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	117.91	95.83	76.44	83.66	114.96	132.01	75.4	79.79	163.84	121.01	156.77	84.27
Merged-chr3-69127124-3	chr3	69127024	69127224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-32.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	152.23	153.68	203.08	150.02	164.46	199.12	173.39	179.58	211.44	219.92	305.51	134.39
Merged-chr11-46804631-3	chr11	46804547	46804747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6152.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	52.9	33.7	67.88	43.44	48.27	78.39	77.4	73.43	59.6	40.67	58.29	23.49
Merged-chr13-74770674-3	chr13	74770569	74770769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301156)	promoter-TSS (NM_001301156)	67.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	93.68	104.64	105.53	101.76	99.41	105.05	49.49	127.74	120.57	99.42	168.83	76.44
Merged-chr12-33429555-3	chr12	33429429	33429629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	-95.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	79.14	77.22	67.88	63.55	65.87	87.8	55.47	60.39	81.04	88.87	72.86	50.75
Merged-chr19-5460645-3	chr19	5460545	5460745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253832)	promoter-TSS (NM_001253832)	38.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	33.52	33.45	29.66	15.28	29.05	29.48	14.95	20.8	27.34	35.15	34.17	18.17
Merged-chr10-24950412-3	chr10	24950302	24950502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22932.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	15.75	17.86	25.67	23.33	35.59	24.15	45.51	46.18	26.75	34.65	50.75	29.45
Merged-chr9-121718398-3	chr9	121718307	121718507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-774.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	29.07	29.93	27.95	22.12	39.68	30.1	17.61	32.58	61.56	44.19	42.21	23.81
Merged-chr7-27605743-1	chr7	27605643	27605843	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-54.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	8.08	3.52	4.56	2.41	5.73	8.15	4.32	3.59	15.14	26.61	39.7	18.8
Merged-chr10-57793147-3	chr10	57793051	57793251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1393.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	34.73	32.7	39.93	49.07	38.86	47.98	40.86	44.61	71.99	52.22	63.82	38.22
Merged-chr5-127615624-3	chr5	127615541	127615741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1751.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	20.59	14.09	17.11	20.91	22.91	33.87	38.86	37.51	45.43	37.66	40.2	21.3
Merged-chr4-139199272-3	chr4	139199168	139199368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5157.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	41.99	16.6	61.61	66.36	50.73	38.26	62.45	61.07	47.21	34.14	75.87	38.22
Merged-chr3-96245263-3	chr3	96245125	96245325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-232.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	50.07	46.78	41.64	47.06	48.27	52.99	32.22	29.3	72.97	64.77	67.33	54.51
Merged-chr1-191171771-1	chr1	191171671	191171871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 3 of 3)	intron (NM_007498, intron 3 of 3)	-6954.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	7.27	1.76	1.14	0.0	2.05	4.39	0.66	0.76	0.79	2.51	0.0	1.57
Merged-chr5-129895676-3	chr5	129895577	129895777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183088)	promoter-TSS (NM_183088)	-46.0	NM_001359408	71970.0	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding	120.33	115.7	128.35	132.32	123.14	127.62	95.0	171.9	199.44	158.16	185.92	104.32
Merged-chr1-75435968-3	chr1	75435853	75436053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357171)	promoter-TSS (NM_001357171)	17.0	NM_001357169	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	26.65	20.37	13.69	12.47	36.41	32.61	16.28	27.2	22.23	31.13	41.2	19.11
Merged-chr10-68283265-3	chr10	68283159	68283359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4533.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	48.05	46.28	49.63	38.21	62.59	65.85	38.86	48.65	61.56	62.26	78.89	34.15
Merged-chr9-104233287-3	chr9	104233194	104233394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	29636.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	34.73	36.22	66.17	64.35	43.36	38.26	52.82	77.83	75.92	61.76	90.45	57.64
Merged-chr12-112897105-1	chr12	112897005	112897205	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	23436.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	5.25	5.53	20.54	7.24	5.73	3.76	9.97	13.43	5.51	2.01	8.54	6.89
Merged-chr7-88255070-3	chr7	88254981	88255181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-23004.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	30.28	24.65	46.78	51.48	40.91	46.41	52.15	41.13	39.14	32.64	57.79	14.1
Merged-chr7-4099029-1	chr7	4098929	4099129	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	-20501.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	3.23	0.75	7.42	0.0	0.0	5.33	1.66	3.17	22.62	25.61	33.16	14.41
Merged-chr1-131089890-3	chr1	131089783	131089983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7960.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.67	10.31	15.4	6.44	19.64	30.1	29.56	27.06	21.83	18.58	26.13	15.98
Merged-chr19-42091100-3	chr19	42091006	42091206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	671.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	79.95	94.32	110.67	109.8	79.37	100.03	61.45	76.32	72.58	80.34	74.37	52.32
Merged-chr5-117888290-3	chr5	117888198	117888398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	21459.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	63.8	57.6	74.16	51.08	99.41	117.9	137.19	109.65	88.71	110.46	133.66	41.66
Merged-chr13-19395856-3	chr13	19395751	19395951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-38.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	159.9	168.27	165.43	220.41	183.69	240.51	181.03	221.44	259.04	234.48	287.92	173.86
Merged-chr7-75796604-3	chr7	75796496	75796696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51742.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	29.48	29.68	39.36	26.14	33.14	42.65	21.92	43.29	53.5	52.22	57.28	30.07
Merged-chr4-40269849-3	chr4	40269742	40269942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134097)	promoter-TSS (NM_134097)	-1.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	151.02	133.81	137.48	121.87	139.91	196.92	100.98	155.66	197.87	185.28	270.34	143.79
Merged-chr8-13105589-3	chr8	13105488	13105688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	-133.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	278.22	244.74	261.27	250.97	302.33	375.97	261.42	292.09	350.89	342.44	400.48	201.43
Merged-chr18-63692437-3	chr18	63692349	63692549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016792)	promoter-TSS (NM_016792)	-90.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	111.85	102.12	81.58	93.31	129.28	142.05	80.72	110.24	171.91	175.74	213.05	122.17
Merged-chr14-55884953-3	chr14	55884852	55885052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019820)	promoter-TSS (NM_019820)	10.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	123.56	79.48	113.52	94.92	121.09	114.45	97.99	111.73	120.37	109.96	156.27	81.76
Merged-chr14-66845701-3	chr14	66845600	66845800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	22900.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	31.09	12.58	22.25	8.85	44.59	40.14	12.29	13.01	65.1	69.29	85.92	33.52
Merged-chr6-51520865-3	chr6	51520746	51520946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-3057.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	35.94	37.23	37.08	41.83	34.77	46.1	44.84	17.24	32.85	35.65	40.2	23.81
Merged-chr10-86881712-3	chr10	86881627	86881827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 44 of 68)	MTE2a|LTR|ERVL-MaLR	102722.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	22.61	26.16	37.08	28.96	30.68	33.55	28.57	51.22	30.88	26.11	48.24	18.8
Merged-chr1-159232142-3	chr1	159231997	159232197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-103.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	52.9	88.54	71.88	84.46	114.14	90.94	98.65	101.97	85.17	78.83	94.47	48.24
Merged-chr4-123572128-3	chr4	123572031	123572231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-44289.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	52.49	43.51	44.5	49.07	58.09	62.71	46.17	66.03	56.65	63.77	71.86	39.78
Merged-chr7-128133847-3	chr7	128133751	128133951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021334, intron 8 of 29)	intron (NM_021334, intron 8 of 29)	4283.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	64.2	43.77	67.31	49.07	73.23	74.63	59.46	62.83	68.84	53.22	75.37	46.99
Merged-chr3-137953341-3	chr3	137953247	137953447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28202.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	41.19	47.54	44.5	48.26	37.23	47.35	35.54	59.16	54.68	53.22	74.37	31.64
Merged-chr9-20997304-3	chr9	20997219	20997419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-5418.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	32.3	24.15	47.35	40.62	41.73	54.88	43.85	62.24	46.42	38.16	50.25	44.8
Merged-chr13-93301173-3	chr13	93301064	93301264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2593.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	20.19	20.37	30.8	23.33	36.82	37.63	18.93	34.71	18.29	19.58	30.15	19.74
Merged-chr11-117195729-3	chr11	117195624	117195824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3937.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	22.61	22.64	32.52	23.73	27.41	37.0	12.95	24.42	24.39	20.59	24.12	16.29
Merged-chr2-180042517-3	chr2	180042411	180042611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	28.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	74.7	68.42	78.72	78.83	87.14	120.73	80.39	100.4	120.37	138.08	148.23	70.48
Merged-chr7-19149405-3	chr7	19149310	19149510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-214.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	221.68	177.58	193.96	201.9	216.82	280.33	142.83	206.83	237.99	252.06	281.89	140.03
Merged-chr5-148464596-3	chr5	148464507	148464707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64703.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	29.07	25.91	46.21	43.04	67.09	62.4	71.08	93.76	60.19	59.25	70.85	39.47
Merged-chr7-142387944-3	chr7	142387831	142388031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-61.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	118.72	115.7	98.12	125.49	128.87	111.32	90.02	122.92	167.58	187.29	185.42	142.54
Merged-chr3-94879947-1	chr3	94879847	94880047	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172683, exon 19 of 19)	exon (NM_172683, exon 19 of 19)	7011.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	5.25	6.04	7.42	5.23	2.05	15.68	11.96	8.41	7.67	5.02	13.57	5.95
Merged-chr5-24416301-3	chr5	24416204	24416404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183000, intron 4 of 10)	intron (NM_183000, intron 4 of 10)	2853.0	NM_001310474	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	26.25	36.97	26.24	17.7	36.41	42.02	20.26	25.49	25.57	50.71	34.17	33.52
Merged-chr3-121630801-3	chr3	121630701	121630901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12684.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	71.07	49.05	86.14	49.87	63.41	95.95	61.78	53.1	106.6	84.86	130.14	48.24
Merged-chr15-84923234-3	chr15	84923128	84923328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-200.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	111.45	146.14	119.8	108.59	147.28	167.76	107.62	95.02	180.76	217.91	162.3	111.84
Merged-chr16-18289032-1	chr16	18288932	18289132	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033324, intron 1 of 13)	CpG	136.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	27.86	33.96	30.8	30.57	58.09	58.95	60.12	51.59	42.48	59.75	70.35	41.35
Merged-chr17-81703459-3	chr17	81703363	81703563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34924.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	53.3	41.25	49.63	71.59	48.68	35.75	63.11	74.47	53.7	40.67	57.79	33.21
Merged-chr11-52360957-3	chr11	52360830	52361030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011694)	promoter-TSS (NM_011694)	68.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	77.53	68.42	74.73	90.9	76.91	66.79	86.36	97.54	96.38	78.83	95.97	56.7
Merged-chr8-14911575-3	chr8	14911466	14911666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-97.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	19.38	14.84	19.4	17.7	29.05	36.37	35.54	34.26	37.96	40.67	39.7	19.11
Merged-chr6-87811902-4	chr6	87811832	87812032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039394)	promoter-TSS (NM_001039394)	-153.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	73.09	77.22	92.41	80.84	87.55	90.0	67.76	66.56	73.76	96.4	111.55	64.53
Merged-chr4-133212608-3	chr4	133212500	133212700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-64.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	50.07	64.39	46.21	30.57	69.96	67.42	22.59	33.03	80.05	73.81	62.31	40.72
Merged-chr5-110653442-3	chr5	110653283	110653483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027156)	promoter-TSS (NM_027156)	-1.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	68.24	55.59	42.21	43.44	54.41	63.34	24.58	57.39	71.99	48.2	55.78	40.41
Merged-chr7-12965815-3	chr7	12965713	12965913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362139)	promoter-TSS (NM_001362139)	-25.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	67.84	75.21	77.01	75.61	78.55	96.89	67.43	112.4	100.7	79.83	135.67	81.14
Merged-chr17-15705580-3	chr17	15705464	15705664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	597.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	21.0	20.37	17.68	25.74	22.91	33.87	23.92	14.89	32.26	20.59	32.66	16.29
Merged-chr2-72979796-3	chr2	72979699	72979899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098425)	promoter-TSS (NM_001098425)	367.0	NR_045269	100503849.0	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	44.01	33.7	26.24	29.76	54.82	75.26	52.15	47.27	63.53	73.31	122.1	39.47
Merged-chr6-54817650-3	chr6	54817551	54817751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	735.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	104.18	98.1	96.98	98.14	110.46	99.72	87.36	122.19	89.3	77.83	83.41	60.15
Merged-chr9-21526160-3	chr9	21526084	21526284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	7.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	48.86	27.92	58.19	36.2	66.27	51.43	73.08	74.83	43.47	44.19	51.76	28.51
Merged-chr15-103240341-3	chr15	103240249	103240449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-48.0	NR_104427	15382.0	Mm.237064	NM_010447	ENSMUSG00000046434	Hnrnpa1	HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding	132.44	122.49	113.52	94.11	129.28	139.23	73.08	92.13	160.5	162.68	177.38	83.64
Merged-chr7-35647516-3	chr7	35647423	35647623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-41.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	78.74	81.5	62.75	78.43	94.91	102.85	62.12	92.5	116.44	97.41	118.08	78.0
Merged-chr18-60212032-3	chr18	60211936	60212136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-41.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	29.48	31.69	77.58	46.25	32.73	28.85	22.59	36.14	48.78	43.18	55.27	31.64
Merged-chr1-156036102-3	chr1	156036022	156036222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160182)	promoter-TSS (NM_001160182)	86.0	NM_001160182	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	128.0	123.5	142.61	119.05	145.64	174.97	102.97	113.92	197.67	227.96	265.31	124.99
Merged-chr1-64301457-5	chr1	64301365	64301565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-180076.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	44.42	61.12	70.74	41.83	42.14	74.0	81.38	61.29	59.6	88.37	74.87	50.44
Merged-chr1-4857701-3	chr1	4857602	4857802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011541)	promoter-TSS (NM_011541)	8.0	NM_011541	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	168.38	181.1	185.4	233.28	148.5	191.91	142.83	206.24	189.61	173.73	213.56	117.47
Merged-chr8-22398508-3	chr8	22398397	22398597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	124.0	NM_181325	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	78.34	76.21	63.89	83.26	84.68	97.83	131.21	98.69	66.48	91.89	86.43	54.82
Merged-chr11-114723320-3	chr11	114723188	114723388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4124.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	32.3	45.02	43.35	33.38	41.32	75.88	26.57	25.29	31.67	38.16	36.68	17.23
Merged-chr3-27742349-3	chr3	27742238	27742438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31886.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	31.09	33.45	58.19	25.74	61.37	63.03	34.88	49.99	52.91	50.71	55.78	32.89
Merged-chr1-91494611-3	chr1	91494509	91494709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-59.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	72.28	47.29	81.0	74.0	67.09	67.1	40.86	73.21	89.69	65.78	155.27	59.83
Merged-chr11-114898242-3	chr11	114898148	114898348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170758, intron 4 of 6)	intron (NM_170758, intron 4 of 6)	8207.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	93.68	93.32	118.08	104.57	112.09	140.79	98.99	106.88	126.86	159.17	153.26	76.44
Merged-chr7-31111229-3	chr7	31111122	31111322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-225.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	81.57	81.5	92.98	59.93	109.64	134.84	94.0	81.11	128.44	135.57	139.19	73.62
Merged-chr9-53007671-3	chr9	53007563	53007763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	240449.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	22.61	21.88	27.95	24.53	29.46	33.55	43.51	19.77	41.3	26.11	45.22	24.12
Merged-chr18-32067870-3	chr18	32067771	32067971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173441, exon 1 of 14)	5' UTR (NM_173441, exon 1 of 14)	137.0	NM_173441	73473.0	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	54.11	70.43	53.62	59.12	54.82	105.36	76.73	64.74	64.12	93.39	68.34	64.53
Merged-chr6-125445474-3	chr6	125445362	125445562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR85a|LTR|Gypsy?	49298.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	91.26	111.68	127.78	151.23	141.55	176.86	107.96	135.45	174.66	179.25	235.16	126.56
Merged-chr7-6172244-3	chr7	6172149	6172349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-264.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	206.74	227.13	225.33	222.42	251.6	264.97	226.21	253.15	304.47	320.85	346.71	210.83
Merged-chrX-56482097-3	chrX	56481993	56482193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 6 of 16)	intron (NM_172779, intron 6 of 16)	27254.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	50.07	58.35	45.07	58.32	72.0	87.17	81.38	80.69	69.82	94.4	107.03	44.8
Merged-chr13-98263081-3	chr13	98262978	98263178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178918)	promoter-TSS (NM_178918)	2.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	228.14	218.83	243.01	267.87	234.42	259.32	221.56	211.82	272.81	275.15	266.82	201.43
Merged-chr5-102502572-3	chr5	102502479	102502679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	21188.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	29.07	23.14	36.51	46.25	42.14	28.85	36.21	65.16	41.7	33.14	56.28	26.0
Merged-chr4-149790823-3	chr4	149790745	149790945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-16578.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	31.5	32.95	28.52	34.99	33.55	35.43	40.86	39.08	31.86	26.61	39.19	27.88
Merged-chr1-177714182-3	chr1	177714090	177714290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-15624.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	14.94	13.33	26.81	18.1	21.27	15.99	15.94	29.16	18.69	22.59	18.59	14.41
Merged-chr4-40757884-3	chr4	40757775	40757975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021535)	promoter-TSS (NM_021535)	10.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	91.26	69.17	65.03	57.51	81.82	101.28	63.44	72.17	111.33	112.97	158.28	75.5
Merged-chr6-108554769-3	chr6	108554669	108554869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65026.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	21.4	12.32	15.97	18.1	22.91	18.19	17.27	29.97	31.47	14.56	37.18	18.17
Merged-chr4-108328286-3	chr4	108328168	108328368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027250, exon 1 of 3)	exon (NM_027250, exon 1 of 3)	116.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	81.57	85.52	83.29	81.24	78.96	101.28	90.68	70.43	73.95	110.46	84.42	65.79
Merged-chr2-170343324-3	chr2	170343240	170343440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13021.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	55.72	31.44	35.37	29.36	62.18	47.66	25.24	43.93	51.93	70.8	65.83	33.21
Merged-chr7-28809621-3	chr7	28809539	28809739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-1251.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	26.65	19.37	38.22	32.58	18.0	38.57	14.62	22.15	48.39	28.12	60.8	37.91
Merged-chr6-34875459-3	chr6	34875399	34875599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_197986)	TTS (NM_197986)	2566.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	46.03	58.1	53.05	74.0	42.14	43.59	63.11	47.78	41.89	39.16	38.19	39.47
Merged-chr17-71486738-1	chr17	71486638	71486838	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11395.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	2.42	2.26	2.85	4.83	3.68	4.08	6.31	6.62	25.18	20.59	52.26	10.96
Merged-chrX-75131006-3	chrX	75130906	75131106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008621)	promoter-TSS (NM_008621)	10.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	49.26	36.97	39.36	46.66	39.68	62.71	28.57	43.35	58.42	35.65	68.34	31.33
Merged-chr8-128491893-3	chr8	128491794	128491994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132653.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	35.94	34.21	23.96	36.2	39.27	25.4	22.59	21.87	38.16	26.61	46.23	24.75
Merged-chr10-126901339-3	chr10	126901236	126901436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026858)	promoter-TSS (NM_026858)	35.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	57.34	52.32	63.32	71.19	64.64	65.22	42.85	56.92	42.68	44.69	71.35	29.76
Merged-chr12-12302027-3	chr12	12301913	12302113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39874.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	121.95	82.5	102.68	143.59	110.46	127.0	110.28	138.37	135.71	105.94	133.66	79.88
Merged-chr19-34846607-3	chr19	34846499	34846699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	-25826.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	29.88	24.4	32.52	36.6	40.09	31.67	25.24	38.13	37.76	29.62	55.78	27.88
Merged-chr13-80941031-3	chr13	80940927	80941127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_103550, intron 1 of 4)	AmnSINE1|SINE|Deu	624.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	17.77	16.6	29.09	21.72	38.46	28.54	38.53	64.32	45.43	30.63	38.69	34.77
Merged-chr7-4685130-3	chr7	4685020	4685220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360629)	promoter-TSS (NM_001360629)	-139.0	NM_024172	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	122.35	130.79	159.16	125.08	181.64	194.1	125.89	112.15	222.85	257.58	228.63	125.31
Merged-chr15-12117807-3	chr15	12117705	12117905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-46.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	53.7	49.3	47.35	37.0	81.41	79.33	42.85	79.51	111.92	144.1	183.41	93.67
Merged-chr1-91458391-3	chr1	91458293	91458493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	935.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	25.84	23.9	23.39	27.75	27.41	31.36	20.93	26.94	45.04	39.67	70.35	29.76
Merged-chr9-13442459-1	chr9	13442359	13442559	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11098.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	8.08	4.53	3.42	7.24	4.5	8.47	2.66	9.34	4.92	5.02	3.01	0.0
Merged-chr14-19777615-3	chr14	19777516	19777716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	26359.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	52.9	34.96	81.0	45.05	60.55	66.16	53.81	62.89	53.89	38.16	43.72	20.68
Merged-chr16-33891763-3	chr16	33891667	33891867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62102.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	71.88	53.83	64.46	66.77	75.68	78.71	59.13	87.03	80.25	76.32	86.43	52.32
Merged-chr18-32377171-3	chr18	32377077	32377277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-40.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	93.68	104.64	100.4	101.76	92.05	109.75	57.13	91.99	111.13	146.61	145.72	52.32
Merged-chr5-149636749-3	chr5	149636644	149636844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-408.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	56.13	66.4	69.03	85.67	81.82	83.72	45.51	74.27	115.06	83.35	200.99	79.57
Merged-chr7-80782439-3	chr7	80782357	80782557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	20874.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	56.53	48.29	73.02	50.68	90.0	94.39	79.39	78.31	68.25	82.85	56.28	51.06
Merged-chr17-10318263-3	chr17	10318161	10318361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	CpG	1100.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	55.72	56.59	70.17	45.05	46.23	76.83	51.15	53.47	80.05	90.38	60.8	38.85
Merged-chr1-162571567-3	chr1	162571445	162571645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016796, intron 1 of 7)	CpG	717.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	55.72	47.54	83.29	57.11	110.05	108.5	87.69	97.63	96.97	88.37	175.37	84.58
Merged-chr9-118655102-3	chr9	118654990	118655190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	48381.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	30.28	25.66	42.21	38.21	29.86	58.32	86.36	96.7	41.7	25.61	54.27	30.07
Merged-chr15-102350794-3	chr15	102350697	102350897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-30.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	82.37	46.28	45.07	61.13	57.68	78.39	38.53	51.0	78.48	89.88	84.42	65.16
Merged-chr8-106058806-3	chr8	106058700	106058900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-803.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	34.32	31.44	21.11	19.71	48.68	64.28	15.94	16.29	51.73	51.21	40.7	23.81
Merged-chr11-75541151-3	chr11	75541067	75541267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	9055.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	77.12	57.85	74.16	77.62	72.0	74.63	62.12	59.44	82.02	90.38	74.87	53.88
Merged-chr11-116616978-3	chr11	116616876	116617076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	7276.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	57.34	43.26	42.21	42.23	65.46	67.1	28.57	44.38	59.79	77.32	55.78	41.35
Merged-chr3-38102681-3	chr3	38102561	38102761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105458.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	34.73	31.44	34.8	30.57	54.0	72.44	58.46	32.3	47.4	67.28	41.2	30.39
Merged-chr2-11596821-3	chr2	11596711	11596911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 3 of 11)	intron (NM_152824, intron 3 of 11)	6388.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	46.84	57.85	76.44	53.09	66.68	104.42	79.39	75.42	113.1	68.29	93.96	56.07
Merged-chr12-102282307-3	chr12	102282219	102282419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	-755.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	64.2	32.7	65.03	53.89	46.23	83.72	62.12	77.97	62.94	58.75	67.33	45.74
Merged-chr4-62283088-3	chr4	62282998	62283198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3331.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	71.07	70.43	66.17	46.25	56.46	85.61	47.83	44.33	84.58	70.8	60.8	32.27
Merged-chr19-3880610-3	chr19	3880510	3880710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	24620.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	67.84	48.54	97.55	74.41	64.23	64.91	39.86	73.65	69.23	45.69	48.74	40.72
Merged-chr3-139062296-3	chr3	139062181	139062381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	12920.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	22.61	13.08	15.4	26.55	14.32	20.7	15.61	21.87	43.27	27.62	38.69	24.43
Merged-chr7-90071645-3	chr7	90071551	90071751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42492.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	35.53	34.46	42.78	38.61	39.68	48.29	41.52	45.25	34.42	54.23	49.24	18.8
Merged-chr6-108307426-3	chr6	108307308	108307508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	94312.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	54.51	47.54	58.19	47.46	60.55	67.73	30.89	55.74	48.58	51.72	51.76	30.7
Merged-chr15-66662174-3	chr15	66662082	66662282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8588.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	18.57	16.85	19.4	26.14	31.91	38.57	22.26	38.07	37.96	20.08	26.13	21.3
Merged-chr18-6136106-3	chr18	6135984	6136184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	14.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	136.48	148.9	166.0	131.92	176.32	191.91	126.56	120.48	189.61	220.93	182.4	109.02
Merged-chr12-102297216-3	chr12	102297114	102297314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	RLTR11A2|LTR|ERVK	13573.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	44.42	32.95	47.35	36.6	62.18	48.29	64.11	82.21	62.55	50.71	59.29	33.83
Merged-chr9-108809932-3	chr9	108809833	108810033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030729, intron 1 of 12)	intron (NM_030729, intron 1 of 12)	1553.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	22.21	32.95	27.95	28.15	31.5	36.69	12.62	32.55	38.94	30.13	44.22	31.01
Merged-chr2-31670696-3	chr2	31670583	31670783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-32.0	NM_144886	227715.0	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	27.05	26.41	18.83	20.11	50.32	38.57	15.28	16.99	54.88	39.16	30.65	21.62
Merged-chr5-28037377-3	chr5	28037283	28037483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34029.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	124.37	119.22	108.96	131.12	132.14	161.49	135.53	156.0	150.07	143.6	143.71	96.17
Merged-chr2-166471636-4	chr2	166471507	166471707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24156.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	21.4	13.33	17.11	22.12	33.14	28.85	21.92	35.64	35.4	29.62	32.66	25.06
Merged-chr11-102316819-3	chr11	102316740	102316940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011551, intron 1 of 20)	CpG	447.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	50.47	47.04	33.66	21.72	44.59	32.61	25.58	29.1	57.43	61.26	53.26	33.52
Merged-chr7-80386720-3	chr7	80386625	80386825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1221.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	86.41	62.13	94.7	77.22	91.23	90.31	68.43	87.31	100.51	87.37	120.09	83.02
Merged-chr12-51718814-3	chr12	51718701	51718901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 2 of 5)	intron (NM_001329698, intron 2 of 5)	-26887.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	50.47	42.51	63.89	56.31	54.0	48.6	50.82	72.34	36.58	29.62	38.69	38.85
Merged-chr8-126979742-3	chr8	126979634	126979834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151744)	promoter-TSS (NR_151744)	-296.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	22.61	16.35	26.24	23.33	15.55	28.54	18.93	25.63	33.04	23.1	50.25	21.3
Merged-chr3-98046576-3	chr3	98046490	98046690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	MIR3|SINE|MIR	33052.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	75.11	67.16	81.58	87.28	81.0	87.49	51.15	90.06	77.5	75.32	132.66	68.92
Merged-chr1-16216780-3	chr1	16216681	16216881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110899.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	23.02	34.96	29.09	22.93	33.14	44.21	31.56	34.29	55.27	60.25	42.71	23.81
Merged-chr12-28649593-3	chr12	28649483	28649683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	-19.0	NR_104608	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	53.7	38.23	50.2	29.76	61.77	56.44	35.87	56.55	85.76	81.84	75.37	51.69
Merged-chr12-113140288-3	chr12	113140143	113140343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	7.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	52.49	75.96	61.04	72.8	52.37	55.5	60.46	51.39	48.19	46.19	58.79	40.72
Merged-chr6-82045343-2	chr6	82045244	82045444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3716.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	18.57	24.65	31.38	33.78	21.68	34.18	32.55	32.36	4.92	2.01	1.51	1.57
Merged-chr11-55468799-3	chr11	55468720	55468920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-932.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	33.11	40.75	35.94	49.07	43.77	45.15	32.22	33.42	43.27	54.23	42.21	30.07
Merged-chr5-122602391-1	chr5	122602291	122602491	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009879, intron 6 of 18)	intron (NM_009879, intron 6 of 18)	12153.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.4	0.0	0.57	0.0	1.64	0.0	1.99	0.0	26.55	25.61	33.16	15.98
Merged-chr4-154878038-3	chr4	154877951	154878151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013783, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	-6048.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	31.5	14.59	31.95	22.52	38.46	47.98	16.94	30.11	54.88	65.27	60.3	46.68
Merged-chr10-53344097-3	chr10	53344013	53344213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	6427.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	30.69	20.63	44.5	32.18	24.14	30.73	14.62	48.84	50.55	22.09	57.79	27.88
Merged-chr16-95833570-3	chr16	95833373	95833573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	65240.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	21.0	18.86	28.52	31.77	16.36	27.59	33.55	23.22	24.59	38.66	22.61	24.75
Merged-chr13-22022458-2	chr13	22022353	22022553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-12712.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	34.73	26.16	22.82	19.31	20.86	23.2	12.29	16.93	5.31	14.56	8.54	4.39
Merged-chr17-27850742-1	chr17	27850642	27850842	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5765.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	4.44	2.01	0.57	0.4	4.91	12.23	2.33	5.41	7.08	6.53	8.54	8.77
Merged-chr12-85468891-3	chr12	85468808	85469008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4982.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	120.73	109.92	133.49	142.78	138.69	147.38	113.93	160.63	136.11	128.04	195.97	124.68
Merged-chr4-134289032-3	chr4	134288929	134289129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1183.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	30.28	18.36	21.68	22.52	38.05	34.49	34.55	35.44	30.29	36.15	39.7	24.12
Merged-chr16-58727929-3	chr16	58727823	58728023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_171826)	promoter-TSS (NM_171826)	13.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	174.44	148.4	199.09	186.22	226.23	235.18	167.08	319.29	259.82	232.98	462.79	161.33
Merged-chr6-50836168-1	chr6	50836068	50836268	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60053.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	1.21	0.5	0.0	3.62	7.36	1.57	0.66	5.97	7.87	15.57	11.05	12.84
Merged-chr4-9670564-2	chr4	9670449	9670649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1205.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	33.11	25.91	36.51	36.2	5.32	5.33	4.32	2.19	46.22	53.73	66.33	36.97
Merged-chr11-51857936-3	chr11	51857848	51858048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-318.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	31.09	28.67	30.23	40.62	24.55	22.58	40.52	28.93	57.24	48.7	64.32	29.45
Merged-chr7-4812418-1	chr7	4812318	4812518	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-78.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	41.99	58.35	41.07	58.72	48.27	64.28	32.22	31.74	73.56	87.87	85.92	55.45
Merged-chr2-120291793-3	chr2	120291697	120291897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2728.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	62.99	54.83	102.68	69.98	45.0	33.87	42.85	67.43	80.45	45.19	92.96	55.76
Merged-chr16-4586781-3	chr16	4586674	4586874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7939.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	313.75	298.56	343.41	303.66	384.15	414.23	266.07	312.42	355.22	380.09	515.04	205.82
Merged-chr13-49341453-3	chr13	49341337	49341537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029791)	promoter-TSS (NM_029791)	-112.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	144.96	153.18	174.56	144.39	121.91	193.16	99.32	151.88	221.86	217.41	276.87	137.52
Merged-chr2-153319395-3	chr2	153319290	153319490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008444, intron 2 of 8)	intron (NM_008444, intron 2 of 8)	26420.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	40.38	32.7	41.07	56.71	58.91	51.43	39.86	47.24	45.63	45.69	65.83	58.89
Merged-chr11-74898031-3	chr11	74897930	74898130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-50.0	NM_177325	104662.0	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	42.4	32.2	39.36	30.16	45.41	44.84	30.89	32.19	42.68	40.17	59.8	27.57
Merged-chr2-160368043-3	chr2	160367948	160368148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-983.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	49.26	39.99	30.8	38.61	38.46	36.37	30.23	36.11	33.63	54.23	48.74	41.98
Merged-chr18-53266520-3	chr18	53266360	53266560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	20798.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	130.83	119.48	141.47	185.41	168.96	178.11	167.41	190.65	164.23	164.69	207.02	116.22
Merged-chr16-96208567-3	chr16	96208490	96208690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015825, intron 2 of 7)	intron (NM_015825, intron 2 of 7)	8120.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	67.43	44.27	60.47	78.43	40.91	52.05	40.86	108.39	34.81	33.64	96.48	26.31
Merged-chr8-85555256-4	chr8	85555124	85555324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019794)	promoter-TSS (NM_019794)	47.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	44.42	47.29	30.23	31.77	43.77	41.08	38.53	31.68	46.03	59.75	49.75	43.54
Merged-chr7-145283234-3	chr7	145283132	145283332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	779.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	123.16	63.39	139.76	90.49	140.73	130.13	155.46	199.23	135.52	152.14	192.95	98.68
Merged-chr2-4450070-3	chr2	4449970	4450170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	49094.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	58.55	35.47	40.5	36.2	34.77	55.82	61.78	41.05	75.33	48.7	70.85	37.91
Merged-chr14-60634734-3	chr14	60634626	60634826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033272)	promoter-TSS (NM_001033272)	21.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	26.65	24.65	26.24	25.34	33.55	25.71	13.95	25.49	33.63	23.1	38.69	27.25
Merged-chr10-24869889-3	chr10	24869792	24869992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	-94.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	207.15	192.67	253.85	201.1	235.64	247.41	184.69	268.82	248.42	225.45	298.47	151.62
Merged-chr8-75063614-3	chr8	75063532	75063732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29946.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	44.82	62.63	88.42	71.59	64.23	106.3	89.02	97.01	94.61	97.41	139.19	68.92
Merged-chr5-114444165-3	chr5	114444061	114444261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023556)	promoter-TSS (NM_023556)	-108.0	NM_001306205	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	179.29	176.57	169.43	189.44	173.05	217.31	101.31	156.73	229.93	208.88	270.34	109.33
Merged-chr7-104398667-3	chr7	104398567	104398767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40021.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	54.92	23.64	25.1	30.16	41.73	32.61	26.91	28.07	52.12	38.66	55.78	30.7
Merged-chr11-110538397-3	chr11	110538312	110538512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59072.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	38.36	40.24	42.78	63.55	32.32	34.81	28.57	40.15	30.68	23.6	34.17	48.24
Merged-chr14-54876925-5	chr14	54876848	54877048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167908, exon 1 of 2)	exon (NM_001167908, exon 1 of 2)	590.0	NM_001167908	105651.0	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	25.44	22.39	20.54	22.52	20.46	17.87	15.28	18.03	23.41	37.66	21.61	20.68
Merged-chr3-60527997-3	chr3	60527881	60528081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	26802.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	49.67	64.39	50.2	76.42	68.32	78.71	45.51	88.07	67.66	45.69	76.88	50.75
Merged-chr13-5614384-3	chr13	5614284	5614484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243708.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	58.55	24.15	75.87	73.6	145.64	58.32	147.48	113.02	96.57	82.85	184.91	56.07
Merged-chr17-37276065-3	chr17	37275924	37276124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	4394.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	60.17	45.53	38.22	46.66	44.18	29.16	48.5	49.6	83.2	56.74	75.87	46.36
Merged-chr5-3198562-3	chr5	3198457	3198657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-145336.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	100.95	88.29	134.06	151.63	80.18	79.96	106.29	105.62	101.29	69.29	118.08	57.95
Merged-chr14-37135377-3	chr14	37135296	37135496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-74.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	243.49	222.6	215.63	233.28	243.83	296.64	242.15	339.39	313.32	279.17	375.35	208.32
Merged-chr3-27689603-3	chr3	27689496	27689696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	G-rich|Low_complexity|Low_complexity	20856.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	64.61	49.05	46.78	57.92	93.28	96.89	68.76	102.39	121.16	99.92	123.11	60.15
Merged-chr3-121491083-3	chr3	121490965	121491165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	41279.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	46.03	55.84	67.88	49.07	54.82	63.34	45.84	63.59	58.02	42.68	65.32	50.12
Merged-chr3-39269595-1	chr3	39269495	39269695	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	382655.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	5.25	7.55	3.42	5.63	1.64	0.0	0.0	0.5	88.51	62.76	85.92	38.85
Merged-chr2-6478493-3	chr2	6478388	6478588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125752.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	92.87	78.98	92.98	86.88	121.09	106.93	82.38	137.33	108.97	135.07	179.39	100.56
Merged-chr4-116685673-3	chr4	116685553	116685753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011034)	promoter-TSS (NM_011034)	54.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	76.32	97.34	56.48	72.4	67.91	104.73	72.41	44.38	97.95	100.42	100.5	52.63
Merged-chr3-88746453-3	chr3	88746355	88746555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26144.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	76.72	82.25	88.99	41.43	62.59	109.12	28.57	40.23	95.2	104.94	68.84	37.91
Merged-chr14-121873347-3	chr14	121873253	121873453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4917.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	42.8	29.18	39.36	34.59	62.59	31.98	33.22	47.16	28.13	49.71	68.84	32.58
Merged-chr1-66700836-3	chr1	66700771	66700971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	40.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	76.32	79.73	79.29	96.93	112.09	115.39	126.89	118.29	151.25	147.62	192.45	80.51
Merged-chr7-19573346-3	chr7	19573235	19573435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027189)	promoter-TSS (NM_027189)	8.0	NM_027189	69731.0	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem nuclear organelle associated protein 7	protein-coding	26.65	29.68	19.4	34.19	23.32	37.94	23.58	23.69	27.14	31.13	31.66	28.51
Merged-chr10-112002763-3	chr10	112002666	112002866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5502.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	20.59	19.62	39.36	33.78	25.77	21.32	25.91	63.65	52.91	22.09	51.25	31.01
Merged-chr15-102518094-3	chr15	102518016	102518216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009319)	promoter-TSS (NM_009319)	-76.0	NM_001253795	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	211.99	213.55	229.89	193.46	203.32	249.6	185.68	189.7	267.69	318.33	338.17	174.18
Merged-chr10-81298078-3	chr10	81297990	81298190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	5127.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	84.8	47.79	79.86	65.96	91.23	100.97	60.79	96.03	114.67	97.91	137.68	66.1
Merged-chr16-87432604-3	chr16	87432495	87432695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	11.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	178.88	179.09	236.17	216.38	205.37	225.77	147.82	247.26	284.21	205.86	297.47	144.42
Merged-chr19-29431165-3	chr19	29431041	29431241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	20222.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	52.49	50.05	55.9	40.62	67.09	80.27	59.46	54.0	70.22	64.27	77.38	33.83
Merged-chr5-103911215-3	chr5	103911116	103911316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359986)	promoter-TSS (NM_001359986)	43.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	67.03	56.09	37.65	43.84	59.32	63.66	45.84	59.86	75.33	83.85	106.53	55.76
Merged-chr2-24934826-3	chr2	24934715	24934915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178408, intron 1 of 7)	CpG	466.0	NR_027876	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	12.92	10.06	14.83	21.72	20.46	14.11	13.29	15.11	24.19	15.06	25.12	15.98
Merged-chr17-12754767-3	chr17	12754667	12754867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13456.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	67.03	66.91	103.25	88.48	110.05	133.9	65.11	92.3	117.82	121.51	129.14	71.74
Merged-chr8-70616067-3	chr8	70615965	70616165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	-779.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	50.07	51.81	87.85	71.19	76.5	82.78	77.06	101.13	71.59	68.79	105.02	51.38
Merged-chr13-30702397-3	chr13	30702294	30702494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	42335.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	22.21	37.98	23.96	20.91	40.91	40.76	24.91	13.54	24.59	15.06	28.64	14.41
Merged-chr10-53398433-3	chr10	53398372	53398572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11410.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	21.8	19.37	17.68	22.12	18.41	16.93	27.57	16.4	22.42	26.11	17.59	20.05
Merged-chr2-91070500-5	chr2	91070411	91070611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-196.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	70.26	67.66	47.35	73.6	112.91	120.1	73.41	74.89	85.36	92.89	93.96	70.8
Merged-chr17-13867141-3	chr17	13867052	13867252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-81221.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	21.8	19.87	45.64	28.96	49.91	30.42	46.17	59.69	28.91	38.16	40.7	25.69
Merged-chr19-10803937-3	chr19	10803831	10804031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	26127.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	14.94	16.85	34.8	17.7	16.77	20.38	12.29	21.7	20.85	16.07	28.14	18.48
Merged-chr13-9878678-3	chr13	9878588	9878788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-113367.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	41.19	16.35	56.48	41.02	36.0	53.62	51.15	55.82	58.22	79.83	115.57	45.74
Merged-chr4-62357914-3	chr4	62357820	62358020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	2676.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	37.96	29.43	24.53	73.2	33.55	45.15	38.86	49.51	57.24	47.2	68.34	45.74
Merged-chr11-45926852-3	chr11	45926761	45926961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18074.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	21.0	33.2	35.94	27.75	32.73	36.37	34.21	21.73	38.55	36.15	26.13	35.09
Merged-chr9-107629284-3	chr9	107629181	107629381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	6061.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	43.21	41.0	70.74	40.22	94.91	68.05	39.2	61.09	88.31	83.35	92.96	51.69
Merged-chr6-145855885-3	chr6	145855783	145855983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9537.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	29.48	38.23	53.05	43.04	61.37	63.97	64.77	64.01	44.65	31.63	37.18	41.04
Merged-chr5-100663197-3	chr5	100663109	100663309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11047.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	88.84	73.95	112.95	83.26	88.78	105.36	80.05	112.37	83.4	98.41	122.61	72.05
Merged-chr5-99380406-3	chr5	99380311	99380511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-127484.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	136.48	114.7	152.88	137.15	208.64	207.9	194.65	204.59	190.79	186.78	272.85	117.47
Merged-chr8-123027909-3	chr8	123027803	123028003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	14381.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	73.09	58.86	53.05	52.29	72.0	84.04	39.86	35.3	60.38	63.27	62.81	32.27
Merged-chr8-46881485-3	chr8	46881389	46881589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105398.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	37.96	36.47	42.21	52.29	53.59	53.31	52.48	44.61	54.09	49.21	54.27	46.99
Merged-chr19-6401605-3	chr19	6401527	6401727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 1 of 16)	CpG	1044.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	56.13	40.5	47.92	45.85	64.64	56.76	42.85	49.65	75.72	77.32	99.99	49.5
Merged-chr15-101984459-3	chr15	101984372	101984572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19870.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	56.53	43.26	45.07	41.43	70.37	88.11	45.51	61.43	93.03	86.86	95.97	55.45
Merged-chr2-181242041-3	chr2	181241937	181242137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183162)	promoter-TSS (NM_183162)	-10.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	105.79	97.09	111.81	76.82	98.18	142.05	89.02	76.32	182.53	182.77	193.46	97.43
Merged-chr4-132494764-3	chr4	132494673	132494873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144907, intron 8 of 9)	intron (NM_144907, intron 8 of 9)	15683.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	90.05	91.3	87.28	102.56	114.14	113.83	97.33	108.76	116.05	116.99	144.21	81.45
Merged-chr7-133744792-3	chr7	133744680	133744880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15489.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	17.77	14.09	18.25	28.56	44.59	34.18	24.58	51.22	22.42	25.11	63.82	27.88
Merged-chrX-96026068-3	chrX	96025958	96026158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69084.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	29.07	21.13	34.23	21.72	30.68	46.1	21.26	31.12	31.86	50.71	42.21	15.98
Merged-chr17-35379492-3	chr17	35379350	35379550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-167.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	153.44	127.78	126.64	102.56	125.19	186.58	105.3	128.05	169.94	176.74	155.77	81.45
Merged-chr6-124477575-3	chr6	124477480	124477680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12796.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	25.84	32.2	27.95	21.72	28.64	46.72	25.24	25.63	40.91	44.19	46.23	21.62
Merged-chr5-139286746-3	chr5	139286643	139286843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33246.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	26.65	24.15	34.23	22.52	48.27	59.27	34.55	34.74	58.22	57.24	73.86	27.25
Merged-chr1-155475184-3	chr1	155475099	155475299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	51912.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	23.82	20.37	29.09	20.11	20.86	17.56	17.61	29.1	28.72	26.61	38.19	12.84
Merged-chr13-49191866-3	chr13	49191731	49191931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	4284.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	20.19	16.35	18.25	21.32	46.23	31.67	55.8	54.81	32.06	31.63	41.2	26.0
Merged-chr3-21935693-3	chr3	21935592	21935792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140960.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	21.8	16.85	21.11	24.13	22.09	23.83	14.62	21.73	34.03	21.09	42.71	24.43
Merged-chr18-34887532-3	chr18	34887436	34887636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	26329.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	144.56	145.38	131.78	132.73	141.96	203.2	93.67	124.07	187.05	160.67	245.71	99.62
Merged-chr8-11758362-3	chr8	11758265	11758465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113518)	promoter-TSS (NM_001113518)	35.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	58.15	50.05	74.73	47.86	59.73	54.56	57.8	72.67	71.99	77.32	74.87	36.65
Merged-chr10-52233552-3	chr10	52233448	52233648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-71.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	23.82	30.69	22.82	32.58	33.55	25.71	37.87	38.66	26.16	32.64	30.15	24.43
Merged-chr8-83332557-3	chr8	83332445	83332645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-59.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	113.47	94.32	88.99	82.45	183.28	222.32	117.92	128.8	193.34	199.84	224.11	94.92
Merged-chr19-5816146-3	chr19	5816040	5816240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13468.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	37.96	24.4	27.38	39.82	88.37	42.96	31.56	55.26	48.58	58.24	36.68	33.83
Merged-chr6-120042962-3	chr6	120042847	120043047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4292.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	14.94	19.87	49.63	28.96	48.27	38.57	38.86	65.86	28.72	35.65	35.68	24.12
Merged-chr3-103021027-3	chr3	103020929	103021129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310693, intron 1 of 17)	CpG	483.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	96.1	110.17	108.96	95.72	113.32	143.93	94.34	93.56	164.43	144.61	196.97	71.42
Merged-chr5-43866748-3	chr5	43866647	43866847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2062.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	31.5	21.13	28.52	21.72	49.91	47.04	39.2	41.33	45.43	56.74	64.82	20.05
Merged-chr7-140125610-3	chr7	140125503	140125703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346725)	promoter-TSS (NM_001346725)	-54.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	90.45	43.01	104.96	80.04	90.0	80.27	65.77	81.08	98.15	78.83	100.5	41.98
Merged-chr4-108118619-3	chr4	108118516	108118716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-69.0	NM_011327	20280.0	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	92.47	66.91	94.13	99.34	87.14	96.58	67.1	108.17	92.05	90.38	117.08	52.94
Merged-chr11-115078565-3	chr11	115078487	115078687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12844.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	42.8	27.17	39.36	50.27	43.36	36.06	19.6	33.45	41.7	35.15	43.72	20.68
Merged-chr11-8624221-3	chr11	8624146	8624346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	RLTR20A4|LTR|ERVK	40289.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	18.98	11.57	23.96	16.09	11.86	14.74	24.58	12.87	23.01	25.11	30.65	28.19
Merged-chr4-126256472-3	chr4	126256366	126256566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-147.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	104.58	95.08	102.68	97.73	110.46	157.41	105.63	82.29	85.76	115.48	82.41	67.35
Merged-chr9-120058840-3	chr9	120058739	120058939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	9457.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	86.01	63.64	81.0	67.17	93.68	98.78	72.41	75.5	117.82	106.95	94.47	42.6
Merged-chr2-146512200-3	chr2	146512114	146512314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-210.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	303.65	339.81	358.25	356.35	376.38	443.71	338.48	465.39	475.99	490.06	686.39	324.54
Merged-chr14-33203950-3	chr14	33203846	33204046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-12877.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	23.02	14.84	30.23	19.71	40.91	52.37	35.21	51.93	28.32	32.13	28.64	20.36
Merged-chr4-116821658-3	chr4	116821567	116821767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-159.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	45.23	42.01	55.33	47.86	23.73	46.41	42.19	24.11	20.65	28.12	44.72	33.83
Merged-chr12-108766298-1	chr12	108766198	108766398	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27013.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	16.56	15.59	11.98	10.86	20.46	20.7	20.59	13.46	24.39	23.1	24.62	11.9
Merged-chr16-91358628-1	chr16	91358528	91358728	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14155.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	19.87	14.56	25.12	16.6
Merged-chr16-59471868-3	chr16	59471762	59471962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025910)	promoter-TSS (NM_025910)	87.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	78.74	106.65	80.43	108.19	68.73	116.34	135.53	79.46	81.23	95.4	102.51	62.65
Merged-chr13-23684077-3	chr13	23683992	23684192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	-107.0	NM_001290380	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	143.75	152.68	124.93	168.92	144.0	155.53	145.16	159.7	213.41	204.86	256.27	137.84
Merged-chr7-98427356-3	chr7	98427262	98427462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13054.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	54.51	42.01	58.76	61.13	64.23	70.24	41.52	69.39	59.6	35.65	50.75	44.17
Merged-chr2-157566227-3	chr2	157566142	157566342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355426, exon 1 of 2)	5' UTR (NM_001355426, exon 1 of 2)	119.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	21.0	30.69	27.95	26.55	39.68	58.01	38.2	22.63	29.9	35.65	27.64	18.17
Merged-chr11-29864476-3	chr11	29864362	29864562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	Lx7|LINE|L1	-38794.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	21.0	18.36	22.82	17.29	37.23	26.65	22.59	39.17	37.96	23.6	38.69	20.36
Merged-chr2-129594381-1	chr2	129594281	129594481	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	-1081.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.25	10.56	11.41	8.04	7.77	7.53	8.3	10.74	13.57	11.55	16.58	9.71
Merged-chr9-24503192-4	chr9	24503074	24503274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-34.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	82.37	80.74	56.48	66.36	78.55	105.05	95.33	72.56	117.42	114.98	153.76	61.4
Merged-chr10-80798525-3	chr10	80798396	80798596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	130.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	45.23	58.35	55.33	55.91	62.59	72.12	50.82	44.1	81.82	77.83	80.4	52.32
Merged-chr15-3995939-3	chr15	3995822	3996022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-117.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	298.0	281.46	270.97	290.39	310.92	381.62	310.58	317.78	458.48	509.64	569.31	261.26
Merged-chr4-59177754-3	chr4	59177658	59177858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11792.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	60.17	63.89	89.56	64.35	74.05	93.13	81.38	101.16	82.41	89.37	106.53	47.93
Merged-chr10-128411613-3	chr10	128411504	128411704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-12.0	NR_104288	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	157.88	134.06	159.73	161.28	186.96	198.49	113.27	160.63	205.34	201.85	244.21	161.65
Merged-chr9-61013135-5	chr9	61013035	61013235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3934.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	11.31	17.61	6.28	16.89	18.0	7.53	11.96	9.25	16.52	14.56	12.06	11.28
Merged-chr17-71263378-3	chr17	71263298	71263498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	47613.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	28.67	29.18	43.93	39.82	64.64	52.99	54.14	88.79	29.31	26.11	26.13	24.12
Merged-chr3-104523775-3	chr3	104523667	104523867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11849.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	36.75	32.95	36.51	67.97	36.41	26.97	42.52	55.65	22.82	16.57	32.16	18.8
Merged-chr8-20297540-3	chr8	20297444	20297644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030708)	promoter-TSS (NR_030708)	-112.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	50.07	39.74	42.21	38.21	81.41	107.24	70.42	138.81	99.92	64.77	117.08	54.2
Merged-chr17-55712644-3	chr17	55712556	55712756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	-20.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	93.28	72.44	81.0	46.66	67.91	84.98	51.82	53.89	85.56	97.91	121.1	51.06
Merged-chr15-100495297-3	chr15	100495192	100495392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-53.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	30.69	37.48	39.93	32.98	59.32	84.04	48.5	56.61	59.99	61.76	42.21	36.97
Merged-chr6-29272568-3	chr6	29272463	29272663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023516)	promoter-TSS (NM_023516)	-63.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	263.68	248.51	258.42	202.71	250.78	336.78	233.85	258.81	336.14	376.58	395.45	176.68
Merged-chr17-51220095-3	chr17	51219992	51220192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40740.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	70.26	49.3	85.57	66.36	67.5	84.04	79.39	79.35	77.69	65.27	104.01	67.35
Merged-chr16-22119112-4	chr16	22119080	22119280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	44119.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	43.21	36.47	41.64	57.51	43.36	52.05	30.56	43.01	92.25	61.76	74.37	64.53
Merged-chr1-130717509-3	chr1	130717402	130717602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178691, exon 1 of 2)	exon (NM_178691, exon 1 of 2)	175.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	50.47	55.34	43.35	45.45	65.46	72.44	37.2	53.92	85.76	106.45	87.43	35.09
Merged-chr11-109365034-3	chr11	109364919	109365119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1365.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	43.21	34.71	52.48	36.6	29.86	36.06	47.83	55.65	32.26	25.11	43.72	24.12
Merged-chr9-100440446-4	chr9	100440344	100440544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46029.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	37.15	44.02	42.78	27.75	31.91	53.31	32.22	25.68	27.34	39.16	24.12	23.18
Merged-chr13-103897792-3	chr13	103897696	103897896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	22790.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	27.86	20.63	23.96	22.12	25.77	33.24	20.59	27.14	43.07	39.16	36.68	21.93
Merged-chr8-105701602-3	chr8	105701504	105701704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-43.0	NM_001047435	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	58.55	43.01	43.35	47.06	61.37	80.9	31.56	43.18	59.2	80.34	60.3	33.52
Merged-chr2-144213973-3	chr2	144213870	144214070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-24680.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	104.99	101.11	110.67	93.31	107.59	122.61	98.99	114.34	138.08	126.53	166.32	76.75
Merged-chr9-66599792-3	chr9	66599701	66599901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6686.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	79.55	40.24	73.59	69.98	93.28	92.5	81.05	92.8	83.4	76.82	101.5	52.94
Merged-chr7-29238238-3	chr7	29238139	29238339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	-84.0	NM_001110201	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	188.98	167.01	156.31	186.22	211.92	254.93	117.59	166.18	178.2	184.77	184.91	106.82
Merged-chr18-60807433-3	chr18	60807328	60807528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	3579.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	117.5	124.51	120.94	98.94	119.05	150.51	85.7	109.23	125.68	134.56	114.57	72.68
Merged-chr4-129508113-3	chr4	129508000	129508200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5481.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	70.26	99.1	54.19	37.81	51.55	148.32	38.53	28.71	79.27	99.42	54.27	23.81
Merged-chr3-154584525-3	chr3	154584406	154584606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168358, intron 4 of 4)	intron (NM_001168358, intron 4 of 4)	-12205.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	17.36	17.86	35.94	51.88	31.5	30.1	41.52	73.82	35.01	21.09	41.2	30.39
Merged-chr11-97555456-3	chr11	97555361	97555561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	19665.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	20.19	27.17	24.53	8.04	22.91	17.25	13.29	11.1	29.5	19.08	19.09	15.04
Merged-chr7-16820549-3	chr7	16820443	16820643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3811.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	42.4	30.43	33.66	32.98	38.86	22.26	30.56	36.93	41.3	23.6	40.7	29.45
Merged-chr4-63562037-3	chr4	63561954	63562154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	1827.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	39.57	43.77	69.03	63.55	47.46	45.15	29.56	54.2	46.03	38.66	70.35	20.68
Merged-chr8-70616853-3	chr8	70616763	70616963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	19.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	90.45	58.1	77.01	83.66	65.46	74.0	66.1	69.67	95.79	81.34	129.14	56.39
Merged-chr19-34599482-3	chr19	34599377	34599577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110517)	promoter-TSS (NM_001110517)	-50.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	42.8	44.27	46.78	38.21	40.09	50.17	19.27	20.52	89.69	88.87	111.55	51.38
Merged-chr18-5990090-3	chr18	5989999	5990199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145999.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	115.08	105.14	127.78	131.52	131.73	162.43	110.61	173.3	137.29	139.08	187.93	88.34
Merged-chr12-85304916-3	chr12	85304810	85305010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145138, intron 20 of 21)	intron (NM_145138, intron 20 of 21)	16319.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	25.84	21.38	36.51	25.74	28.64	32.93	24.25	30.93	40.52	27.62	35.17	23.49
Merged-chr2-25372262-3	chr2	25372180	25372380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290407, exon 1 of 6)	5' UTR (NM_001290407, exon 1 of 6)	245.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	46.44	35.21	63.32	45.05	68.32	62.09	47.83	63.67	73.56	48.2	69.85	33.83
Merged-chr16-51921272-3	chr16	51921178	51921378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	66009.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	86.82	79.48	87.28	115.83	77.73	73.06	100.65	120.36	134.93	105.94	124.11	81.14
Merged-chr6-39120309-3	chr6	39120170	39120370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045813, intron 1 of 3)	RMER16|LTR|ERVK	1797.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	38.76	18.36	41.07	25.34	36.0	32.3	28.9	24.45	33.83	32.64	43.21	18.17
Merged-chr1-93801998-3	chr1	93801910	93802110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023136)	promoter-TSS (NM_023136)	-76.0	NM_001105667	21915.0	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	161.92	133.31	169.43	157.26	151.78	192.22	146.16	168.17	198.06	175.23	196.97	118.1
Merged-chr10-8772640-3	chr10	8772543	8772743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113427.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	32.3	18.36	55.33	28.96	44.18	37.32	56.8	55.23	31.47	35.65	42.21	34.15
Merged-chr6-50566605-3	chr6	50566488	50566688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015581)	promoter-TSS (NR_015581)	-55.0	NR_027892	73183.0	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	155.06	158.21	185.4	172.14	175.1	218.87	141.84	159.76	205.93	247.54	279.38	135.33
Merged-chr5-143758270-3	chr5	143758169	143758369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015486)	promoter-TSS (NR_015486)	-85.0	NR_015486	320064.0	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	35.13	38.99	49.06	40.62	39.68	40.14	23.25	52.88	51.14	45.19	74.37	20.99
Merged-chr2-148536799-3	chr2	148536703	148536903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93268.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	21.4	21.38	46.78	23.33	40.5	27.91	45.18	84.06	36.39	37.16	57.79	27.25
Merged-chr2-85037163-3	chr2	85037066	85037266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136081)	promoter-TSS (NM_001136081)	46.0	NM_182990	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	71.88	64.14	78.72	62.34	76.09	94.7	63.78	86.1	107.0	86.36	144.71	55.76
Merged-chr3-96670182-3	chr3	96670064	96670264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081139)	promoter-TSS (NM_001081139)	33.0	NM_001356540	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	28.67	19.87	18.83	21.32	28.23	31.67	18.27	26.61	89.69	74.81	109.04	55.76
Merged-chr11-22859764-3	chr11	22859637	22859837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-2.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	63.4	114.95	79.86	54.7	92.05	122.92	66.77	66.98	98.34	119.0	107.03	53.88
Merged-chr7-120835087-3	chr7	120834993	120835193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7738.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	29.48	23.64	35.37	26.55	33.14	31.04	26.57	37.26	57.24	65.27	53.77	33.83
Merged-chr9-107340533-3	chr9	107340413	107340613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175486)	promoter-TSS (NM_175486)	-127.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	35.53	41.75	51.34	36.2	51.96	54.88	44.51	41.61	88.31	68.79	104.52	42.6
Merged-chrX-73967278-3	chrX	73967120	73967320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008224)	promoter-TSS (NM_008224)	-863.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	35.13	35.97	36.51	34.59	32.32	47.04	18.27	29.33	43.86	46.7	47.74	24.43
Merged-chr19-4121190-3	chr19	4121103	4121303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	372.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	40.78	36.47	12.55	23.33	30.27	40.14	16.61	30.22	65.69	73.81	44.22	33.21
Merged-chr10-8912373-3	chr10	8912230	8912430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26260.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	95.7	112.94	108.39	148.01	108.0	131.07	115.93	129.37	102.87	116.99	163.81	107.14
Merged-chr14-25527518-2	chr14	25527413	25527613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-6926.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	4.44	5.53	19.4	17.29	17.59	19.13	29.9	25.01	8.26	3.51	3.52	6.89
Merged-chr5-104046818-3	chr5	104046714	104046914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028794)	promoter-TSS (NM_028794)	-50.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	191.0	204.49	240.73	187.02	190.23	209.15	150.47	162.37	202.79	292.23	297.47	137.21
Merged-chr18-75363439-3	chr18	75363336	75363536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155535, intron 6 of 6)	intron (NR_155535, intron 6 of 6)	3652.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	44.42	41.5	58.19	42.63	61.77	83.1	75.07	96.34	73.76	95.4	85.92	53.57
Merged-chr7-45460996-3	chr7	45460883	45461083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007527)	TTS (NM_007527)	-1097.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	29.48	29.43	42.21	35.8	39.27	59.27	64.44	62.16	55.27	43.18	53.26	39.78
Merged-chr2-133495646-3	chr2	133495551	133495751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56508.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	63.4	58.61	76.44	98.94	90.82	47.66	67.76	90.06	55.47	39.67	119.09	41.35
Merged-chr8-69395560-3	chr8	69395486	69395686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038043)	promoter-TSS (NR_038043)	-42.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	27.46	25.4	47.92	42.63	50.32	49.86	36.21	57.08	56.25	55.23	76.38	39.47
Merged-chr3-96629886-3	chr3	96629792	96629992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025875)	promoter-TSS (NM_025875)	-36.0	NM_025875	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	41.19	43.77	27.95	52.69	54.0	58.01	29.9	28.43	62.15	57.24	75.87	26.63
Merged-chr17-17581426-3	chr17	17581307	17581507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	43082.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	74.3	56.34	61.04	81.24	63.82	81.22	57.47	88.51	49.17	40.67	85.42	41.98
Merged-chr8-95332076-5	chr8	95331965	95332165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024467)	promoter-TSS (NM_024467)	-115.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	44.01	61.88	56.48	80.44	40.09	66.48	78.39	56.66	36.39	46.7	45.73	58.89
Merged-chr10-77606578-3	chr10	77606469	77606669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301671)	promoter-TSS (NM_001301671)	-29.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	144.96	128.78	114.09	115.03	136.64	190.65	103.31	142.68	219.31	210.88	258.28	106.82
Merged-chr9-116083741-3	chr9	116083639	116083839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91624.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	26.25	23.9	36.51	38.61	29.46	48.29	36.87	34.09	49.96	30.13	50.75	20.05
Merged-chr13-75794368-3	chr13	75794265	75794465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45520.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	24.63	35.21	55.9	20.51	80.59	79.65	41.19	34.96	71.0	102.43	80.9	33.83
Merged-chr9-124282228-3	chr9	124282174	124282374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30420.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	28.67	19.12	47.35	43.84	40.91	30.73	25.58	35.92	46.42	45.69	58.29	28.19
Merged-chr7-100461800-3	chr7	100461690	100461890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-11201.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	79.14	72.19	120.37	91.3	106.37	115.08	54.14	89.61	97.95	86.36	117.58	60.77
Merged-chr7-80340299-3	chr7	80340215	80340415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-96.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	73.89	74.96	71.31	79.23	86.32	102.22	66.1	83.08	119.0	100.92	114.06	79.26
Merged-chr8-126594656-3	chr8	126594556	126594756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-14677	-1220.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	202.3	203.99	179.69	222.82	236.05	247.72	173.39	232.82	253.73	278.17	368.82	194.23
Merged-chr6-116672564-3	chr6	116672453	116672653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	1283.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	71.07	74.2	55.9	33.38	54.82	118.53	39.86	22.29	93.03	99.42	85.42	31.01
Merged-chr18-82462197-3	chr18	82462136	82462336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-12887.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	25.04	19.37	23.96	12.87	39.68	36.69	16.28	21.84	31.08	32.64	33.16	19.42
Merged-chr11-116020140-3	chr11	116020069	116020269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4335.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	21.8	10.56	14.26	23.33	11.05	18.81	15.28	8.66	24.98	14.06	19.6	14.72
Merged-chr12-12278662-3	chr12	12278569	12278769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	16530.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	42.4	59.61	43.93	58.32	47.87	70.24	77.06	61.35	53.89	80.34	53.77	47.3
Merged-chr1-33900330-3	chr1	33900241	33900441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	7280.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	89.64	69.42	57.05	67.97	82.64	129.19	45.84	76.15	94.21	94.4	77.38	45.74
Merged-chr9-96364495-3	chr9	96364404	96364604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007502)	promoter-TSS (NM_007502)	-73.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	187.76	185.63	197.95	170.13	191.46	206.64	136.85	186.59	297.59	294.74	305.51	180.13
Merged-chr19-9936751-3	chr19	9936650	9936850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37217.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	50.88	32.95	45.07	45.45	79.78	62.09	55.14	89.41	52.52	49.71	51.25	28.19
Merged-chr9-32562643-3	chr9	32562539	32562739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21187.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	36.75	21.38	39.93	31.37	31.09	36.69	30.89	40.82	31.86	15.06	34.17	23.81
Merged-chr13-100744203-3	chr13	100744094	100744294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025369, intron 1 of 3)	CpG	465.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	32.71	39.49	46.78	27.75	47.05	51.43	28.9	43.93	47.01	62.76	91.95	41.66
Merged-chr6-24707304-1	chr6	24707204	24707404	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25941.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	7.67	3.27	1.14	7.64	27.41	41.08	17.94	35.64	2.36	12.05	11.05	1.88
Merged-chr13-19394328-3	chr13	19394223	19394423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	1490.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	34.32	15.59	22.25	33.78	31.91	29.79	16.28	32.16	29.31	21.09	39.7	19.74
Merged-chr4-63389920-3	chr4	63389830	63390030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8310.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	117.91	66.91	85.0	98.94	108.0	122.92	79.39	130.07	117.62	71.8	120.6	55.13
Merged-chr19-3768889-3	chr19	3768781	3768981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167889, intron 2 of 10)	CpG-7172	1460.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	140.12	134.57	141.47	102.56	152.19	184.69	84.37	111.81	129.03	163.18	168.83	71.11
Merged-chr3-88143270-3	chr3	88143167	88143367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	895.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	37.96	28.17	24.53	28.15	44.59	48.6	59.46	43.57	61.17	51.72	74.87	44.17
Merged-chr11-114229964-2	chr11	114229882	114230082	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	31724.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	5.25	1.76	3.42	1.21	26.59	23.52	30.23	19.32	68.84	20.08	55.78	42.29
Merged-chr7-45525552-3	chr7	45525482	45525682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	686.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	78.74	91.56	51.34	39.82	29.46	86.86	29.9	36.7	87.53	83.85	79.89	44.8
Merged-chr7-25681049-2	chr7	25680942	25681142	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172148)	promoter-TSS (NM_172148)	-116.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	79.95	78.23	90.7	55.5	119.87	139.85	57.13	88.49	126.67	142.1	132.66	74.24
Merged-chr11-69396116-3	chr11	69396028	69396228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045525)	promoter-TSS (NM_001045525)	337.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	33.92	45.53	41.07	33.38	44.59	61.46	39.86	36.9	60.78	64.77	69.34	33.21
Merged-chr11-60417172-3	chr11	60417086	60417286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145427)	promoter-TSS (NM_145427)	41.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	155.87	154.94	164.86	129.91	187.37	216.05	90.68	114.87	221.27	217.91	158.28	112.78
Merged-chr14-31183821-3	chr14	31183720	31183920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347583, exon 14 of 14)	3' UTR (NM_001347583, exon 14 of 14)	-15179.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	36.34	18.86	46.21	39.42	43.77	38.57	34.55	48.25	27.73	44.69	35.17	25.06
Merged-chr14-20298309-3	chr14	20298206	20298406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3616.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	29.07	27.17	35.37	22.52	33.96	46.41	30.56	39.73	52.52	64.77	57.79	34.77
Merged-chr14-64949965-3	chr14	64949869	64950069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-76.0	NM_153414	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	115.08	92.56	110.1	104.57	138.28	133.9	113.27	143.36	142.01	143.6	163.31	88.97
Merged-chr11-120727362-3	chr11	120727265	120727465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347608)	promoter-TSS (NM_001347608)	-81.0	NM_001347608	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	126.39	111.68	104.96	130.71	148.91	129.82	90.02	116.61	138.67	140.59	160.79	92.1
Merged-chr7-141016974-3	chr7	141016906	141017106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-114.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	42.4	32.7	59.33	73.2	55.23	62.4	71.75	88.43	70.22	72.3	102.51	68.61
Merged-chr6-134073130-3	chr6	134073032	134073232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	37432.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	38.36	13.08	17.68	18.9	36.41	42.96	17.94	24.22	34.62	21.09	51.25	20.05
Merged-chr1-91043601-3	chr1	91043516	91043716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-9828.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	15.75	13.83	14.83	23.33	18.82	18.19	16.28	28.09	15.54	17.57	17.59	19.42
Merged-chr1-58720216-3	chr1	58720113	58720313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6927.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	35.13	28.17	29.09	17.7	56.46	88.43	48.83	48.48	61.17	69.29	55.27	32.27
Merged-chr19-3908080-3	chr19	3908002	3908202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-969.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	115.49	84.76	103.82	103.37	119.87	133.27	62.78	103.99	102.87	117.99	110.55	91.47
Merged-chr4-151996316-3	chr4	151996215	151996415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-136.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	172.42	144.63	195.1	170.53	184.1	241.76	126.22	184.26	225.4	244.53	308.52	150.99
Merged-chr5-64503673-3	chr5	64503565	64503765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	26657.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	30.69	24.15	33.09	24.13	34.77	19.76	36.54	40.09	31.08	24.6	30.65	27.88
Merged-chr3-122301527-3	chr3	122301433	122301633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	-7830.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	93.68	59.36	67.31	103.77	123.96	119.78	116.26	156.87	98.54	112.97	134.67	58.58
Merged-chr10-41473911-3	chr10	41473813	41474013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2401.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	43.21	23.14	33.09	22.12	51.14	61.46	27.9	40.93	51.73	44.19	59.29	40.1
Merged-chr18-23997056-3	chr18	23996954	23997154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011755, intron 2 of 2)	intron (NM_011755, intron 2 of 2)	7420.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	70.66	59.11	101.54	82.85	91.64	85.61	49.83	126.93	98.34	75.32	97.48	75.18
Merged-chr15-58034165-5	chr15	58034064	58034264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029418, exon 1 of 6)	exon (NM_029418, exon 1 of 6)	130.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	29.07	45.78	34.8	25.74	31.91	53.62	32.55	23.36	39.53	66.28	43.72	47.93
Merged-chr12-38788782-3	chr12	38788679	38788879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5068.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	67.43	56.85	61.04	100.55	101.46	100.03	96.0	157.99	77.3	77.83	131.65	65.16
Merged-chr2-61583122-3	chr2	61582997	61583197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011529, intron 1 of 7)	L1M4|LINE|L1	4511.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	48.05	50.05	46.21	43.84	69.14	75.88	43.85	66.73	64.91	58.75	101.5	39.78
Merged-chrX-48623716-3	chrX	48623620	48623820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290705)	promoter-TSS (NM_001290705)	46.0	NM_001290705	20523.0	Mm.34953	NM_011398	ENSMUSG00000031105	Slc25a14	BMCP1|UCP5|UCP5L|UCP5S	solute carrier family 25 (mitochondrial carrier, brain), member 14	protein-coding	27.46	17.1	5.7	19.31	36.0	26.03	28.23	26.8	33.63	21.09	49.24	31.64
Merged-chr9-56419082-3	chr9	56418995	56419195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	476.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	50.47	30.43	31.95	15.28	35.18	47.66	13.95	23.55	52.52	26.61	49.75	22.24
Merged-chr18-12236450-3	chr18	12236345	12236545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-59.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	178.88	188.65	170.57	207.94	212.73	233.93	146.49	181.94	221.47	231.47	331.64	131.26
Merged-chr16-90177655-3	chr16	90177567	90177767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35430.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	23.02	24.15	27.38	22.52	31.5	25.09	30.89	37.99	22.03	23.1	27.64	14.72
Merged-chr5-142906745-3	chr5	142906665	142906865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-11.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	163.54	194.68	157.45	128.3	118.64	182.81	95.0	97.26	206.52	251.55	228.63	121.86
Merged-chr11-106256161-3	chr11	106256053	106256253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	-32.0	NM_008950	19184.0	Mm.272361	NM_008950	ENSMUSG00000020708	Psmc5	mSUG1	protease (prosome, macropain) 26S subunit, ATPase 5	protein-coding	31.9	16.6	24.53	24.53	30.27	30.1	7.97	25.77	57.63	38.66	32.66	26.31
Merged-chr10-39261345-3	chr10	39261246	39261446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97552.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	88.03	64.89	71.88	105.78	77.32	85.29	79.39	101.5	80.64	66.28	105.52	47.93
Merged-chr8-40511322-3	chr8	40511231	40511431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033560)	promoter-TSS (NM_033560)	423.0	NM_001271543	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	35.53	34.46	35.94	43.84	44.18	35.12	34.55	31.4	47.99	33.64	35.68	26.94
Merged-chr4-8912885-3	chr4	8912799	8912999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161575.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	43.61	47.04	39.36	55.5	54.82	65.54	52.15	56.33	85.95	81.34	120.6	53.26
Merged-chr16-62857710-3	chr16	62857611	62857811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	3404.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	19.79	33.7	30.8	34.59	47.87	47.04	24.91	59.44	68.25	44.19	69.85	35.71
Merged-chr8-88696879-3	chr8	88696760	88696960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173369)	promoter-TSS (NM_173369)	-168.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	206.74	220.09	260.7	211.56	244.64	309.5	203.29	244.8	266.91	305.28	346.21	137.21
Merged-chr2-124711225-3	chr2	124711123	124711323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57642.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	49.26	68.92	58.19	54.3	38.46	111.63	73.74	69.87	79.86	98.41	96.48	28.19
Merged-chr3-90265118-3	chr3	90265011	90265211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-124.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	52.09	45.02	54.19	50.68	52.77	62.4	48.5	64.82	76.51	66.28	83.41	58.58
Merged-chr15-41760229-1	chr15	41760129	41760329	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	Lx4A|LINE|L1	-28766.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.83	0.0	2.28	4.42	11.45	2.51	2.66	7.29	3.34	6.53	7.03	3.45
Merged-chr18-80151746-3	chr18	80151620	80151820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-238.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	73.09	115.45	47.35	98.14	78.96	120.73	73.74	73.74	132.37	150.63	113.06	70.48
Merged-chr11-101095468-3	chr11	101095386	101095586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-51.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	45.23	48.54	31.95	46.25	51.96	55.82	24.58	31.35	45.83	44.69	41.2	23.81
Merged-chr11-120617922-3	chr11	120617790	120617990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	0.0	NM_024229	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	69.45	63.89	60.47	65.16	63.82	76.2	36.21	46.71	74.94	76.82	67.33	40.1
Merged-chrX-21062087-3	chrX	21061990	21062190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111076)	promoter-TSS (NM_001111076)	-52.0	NM_001111076	319535.0	Mm.170163	NM_001013387	ENSMUSG00000054737	Zfp182	6330583I20Rik|Znf182	zinc finger protein 182	protein-coding	20.19	17.86	19.97	32.58	40.91	37.0	23.92	29.75	50.94	47.7	60.3	39.16
Merged-chr7-35555418-3	chr7	35555297	35555497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	531.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	57.34	51.56	65.6	53.49	76.5	66.79	74.74	66.79	74.15	97.91	105.52	67.98
Merged-chr11-16932320-3	chr11	16932220	16932420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18962.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	27.46	44.02	58.19	72.8	40.91	30.73	43.18	68.78	42.29	34.14	53.77	32.58
Merged-chr1-105990406-3	chr1	105990323	105990523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	17.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	302.44	353.15	326.3	370.02	329.33	412.98	384.99	398.16	448.84	479.51	585.39	289.15
Merged-chr7-55868464-3	chr7	55868371	55868571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	26400.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	29.88	24.9	37.65	23.33	75.28	108.5	73.41	88.09	94.02	120.51	92.46	63.59
Merged-chr7-6363229-1	chr7	6363129	6363329	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-79.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	50.07	68.16	57.05	73.6	76.91	80.59	104.3	73.23	54.88	75.82	78.89	52.32
Merged-chr10-111159953-3	chr10	111159858	111160058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-4844.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	33.11	58.86	48.49	59.53	44.59	67.1	41.19	58.77	30.09	23.1	22.61	16.6
Merged-chr15-82899775-3	chr15	82899680	82899880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045068, intron 1 of 3)	CpG	700.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	76.72	70.68	60.47	33.38	53.59	75.26	35.54	24.28	65.3	56.74	38.69	20.68
Merged-chr11-69991578-3	chr11	69991478	69991678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026017)	TTS (NM_026017)	208.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	59.76	56.85	56.48	26.95	45.41	64.91	18.27	36.22	59.79	78.33	71.35	48.56
Merged-chr7-140115766-3	chr7	140115654	140115854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	669.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	30.69	23.14	46.21	19.31	54.0	37.94	45.84	42.73	46.03	46.19	58.29	22.24
Merged-chr14-45667366-3	chr14	45667281	45667481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9238.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	198.67	172.05	196.81	126.29	132.96	238.63	147.15	177.76	253.33	221.43	217.57	121.55
Merged-chr8-26978076-3	chr8	26977987	26978187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101502, intron 1 of 1)	CpG	751.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	23.42	29.93	22.82	26.55	31.09	38.88	40.19	40.68	55.07	39.16	66.33	39.16
Merged-chrUn_JH584304-27208-1	chrUn_JH584304	27108	27308	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32481.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	180.95	191.8	217.57	127.81
Merged-chr9-66347561-3	chr9	66347465	66347665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2885.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	35.13	52.82	33.09	41.02	45.82	53.31	27.9	43.68	60.58	47.2	63.31	44.17
Merged-chr3-65950456-3	chr3	65950357	65950557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	7792.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	16.96	14.59	22.25	14.08	23.73	29.16	17.61	27.73	25.37	23.1	28.14	12.84
Merged-chr17-34644721-3	chr17	34644636	34644836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-147.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	63.8	57.6	38.79	46.66	88.37	82.16	40.86	47.58	86.35	90.88	84.42	32.27
Merged-chr2-62656263-3	chr2	62656169	62656369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-8058.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	17.36	22.39	27.38	19.71	38.86	36.37	25.91	38.1	47.99	25.61	38.19	20.68
Merged-chr17-24169038-3	chr17	24168892	24169092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	-183.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	46.44	61.12	49.63	28.15	41.73	58.01	24.91	32.86	62.55	83.85	67.84	44.48
Merged-chr11-97987775-3	chr11	97987662	97987862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	40.78	31.69	38.79	24.94	32.32	48.29	30.89	35.05	55.47	51.72	54.77	20.36
Merged-chr1-131287051-3	chr1	131286963	131287163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7500.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	22.21	15.59	22.82	24.53	27.0	79.65	26.24	23.16	24.39	45.19	49.75	25.37
Merged-chr10-85367099-1	chr10	85366999	85367199	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-19715.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.4	0.5	0.0	2.41	0.0	0.63	0.0	0.39	10.82	19.08	38.69	15.35
Merged-chr10-40125370-3	chr10	40125274	40125474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	16880.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	125.18	88.79	177.98	148.81	160.78	173.72	162.76	182.05	173.87	164.19	272.85	116.85
Merged-chr11-116138928-3	chr11	116138826	116139026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-58.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	119.52	114.95	77.01	97.73	117.0	165.25	62.45	76.6	148.3	172.72	135.67	92.1
Merged-chr16-31838275-4	chr16	31838224	31838424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 13 of 22)	L1MA9|LINE|L1	-40486.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	50.88	42.76	59.9	33.78	27.41	52.05	53.15	46.09	48.78	43.68	48.24	20.99
Merged-chr7-4943420-3	chr7	4943299	4943499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173008, intron 13 of 13)	intron (NM_173008, intron 13 of 13)	17555.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	43.61	50.56	48.49	32.18	45.41	59.27	21.59	42.62	65.1	84.35	73.36	38.85
Merged-chr11-51606067-3	chr11	51605973	51606173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048061, intron 2 of 7)	CpG	808.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	78.74	125.01	79.29	75.21	65.87	120.1	79.39	70.49	122.93	106.45	106.53	76.75
Merged-chr11-115199364-2	chr11	115199266	115199466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11879.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	33.92	24.4	35.37	19.31	5.73	12.23	7.64	7.29	41.7	32.64	59.8	23.49
Merged-chr5-145114277-3	chr5	145114177	145114377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	21.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	41.59	62.88	41.07	36.6	45.41	68.67	48.16	50.27	58.02	67.28	101.5	48.24
Merged-chr3-88102894-3	chr3	88102786	88102986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033484, intron 19 of 37)	intron (NM_001033484, intron 19 of 37)	20835.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	35.94	39.49	62.18	65.96	83.05	57.38	63.44	98.5	52.32	57.24	73.86	70.8
Merged-chr16-11460965-1	chr16	11460865	11461065	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	55317.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.06	6.29	6.28	0.0	19.64	17.56	18.27	8.89	9.83	5.52	5.02	5.33
Merged-chr2-145832061-3	chr2	145831982	145832182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	45966.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	20.19	10.06	22.25	23.73	29.86	15.37	36.21	40.32	24.0	24.6	43.21	20.05
Merged-chr1-87658208-3	chr1	87658100	87658300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	37888.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	20.59	11.32	35.94	14.48	33.55	25.4	19.27	31.04	16.13	27.11	26.63	16.29
Merged-chr11-61494408-3	chr11	61494306	61494506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291035)	promoter-TSS (NM_001291035)	-140.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	193.82	175.57	198.52	195.47	207.01	246.47	149.81	150.42	242.52	255.07	227.62	115.28
Merged-chr2-116971839-2	chr2	116971745	116971945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71693.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	16.15	14.59	14.83	21.72	20.05	11.6	13.95	14.13	18.49	23.6	27.64	10.02
Merged-chr9-72438476-3	chr9	72438369	72438569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008613)	promoter-TSS (NM_008613)	-60.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	35.94	43.01	51.91	50.68	62.18	60.83	46.5	64.6	69.04	49.21	99.99	59.21
Merged-chr1-36129348-3	chr1	36129253	36129453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14960.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	49.67	44.27	49.63	57.51	66.27	83.41	83.37	102.11	57.24	54.73	65.83	65.79
Merged-chr14-30715606-3	chr14	30715543	30715743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	28.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	46.44	35.47	31.38	13.67	36.82	47.35	17.94	22.54	35.8	49.21	48.74	20.36
Merged-chr1-184441393-3	chr1	184441304	184441504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116287.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	46.84	25.4	37.65	47.06	33.14	40.45	19.93	52.18	52.52	50.21	57.79	41.66
Merged-chr10-12867010-3	chr10	12866901	12867101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5266.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	78.34	72.69	110.1	87.28	87.96	112.57	76.07	102.67	108.38	97.41	177.38	78.32
Merged-chr1-34485920-3	chr1	34485777	34485977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12535.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	15.75	14.34	8.56	15.28	17.18	27.59	29.56	18.48	36.78	33.64	29.14	22.87
Merged-chr1-127278527-1	chr1	127278427	127278627	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73541.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	2.42	4.02	8.56	3.62	10.64	10.98	11.29	10.21	11.01	10.54	11.56	9.71
Merged-chr16-57223167-3	chr16	57223054	57223254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	8312.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	15.34	14.59	31.95	37.4	34.77	31.04	22.26	37.57	29.7	31.63	36.68	37.91
Merged-chr6-100110191-3	chr6	100110083	100110283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177175.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	63.4	53.32	79.86	72.4	49.91	61.77	56.14	66.2	47.21	39.16	63.31	26.94
Merged-chr3-76025721-1	chr3	76025621	76025821	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48840.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.81	0.5	3.42	6.84	10.23	6.27	4.32	12.53	0.79	3.01	10.05	9.71
Merged-chr5-73490901-3	chr5	73490802	73491002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-124.0	NM_001190733	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	260.85	274.92	273.82	333.83	339.15	380.99	314.23	427.68	377.84	390.64	511.53	201.74
Merged-chr1-84302996-3	chr1	84302902	84303102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18357.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	26.25	31.19	27.38	20.91	53.59	74.94	45.18	41.05	64.32	44.19	51.76	26.31
Merged-chr6-17637781-1	chr6	17637681	17637881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	771.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	17.36	15.59	23.96	16.89	12.27	19.76	17.94	16.88	28.52	52.72	29.65	22.87
Merged-chr8-88697579-2	chr8	88697472	88697672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	544.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	23.02	12.07	16.54	15.28	15.55	20.38	17.94	13.15	23.8	20.59	29.14	16.92
Merged-chr15-83031077-3	chr15	83030969	83031169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1119.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	29.07	18.36	45.07	25.34	33.96	29.16	37.87	40.21	39.34	29.12	45.73	23.81
Merged-chr10-68239241-1	chr10	68239141	68239341	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39485.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	14.54	15.34	23.39	10.05	25.36	25.4	16.28	15.31	32.85	11.05	16.08	9.71
Merged-chr4-63496087-3	chr4	63495990	63496190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028640)	promoter-TSS (NM_028640)	-99.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	56.94	36.47	54.76	51.08	57.68	48.29	22.26	61.91	69.04	63.77	68.34	57.64
Merged-chr17-75551965-3	chr17	75551872	75552072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-26.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	216.03	220.59	180.26	183.0	227.05	290.05	219.23	209.33	321.98	321.35	327.62	171.98
Merged-chr4-41361236-3	chr4	41361123	41361323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	9260.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	36.34	29.68	50.2	47.86	51.55	37.63	31.22	43.26	40.32	50.21	42.21	33.52
Merged-chr7-25651462-3	chr7	25651361	25651561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	7300.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	40.78	43.77	53.05	40.62	54.0	53.93	27.24	40.63	29.5	34.65	29.14	23.18
Merged-chr10-80509793-3	chr10	80509656	80509856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	14850.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	9.69	16.1	18.25	19.31	16.77	16.62	22.92	16.35	24.39	26.11	22.11	17.54
Merged-chr14-54442723-3	chr14	54442596	54442796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008608)	TTS (NM_008608)	11098.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	73.49	89.8	66.17	40.62	68.32	127.0	70.75	31.54	108.77	114.98	96.98	35.09
Merged-chr3-108797964-3	chr3	108797854	108798054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011504, intron 16 of 18)	intron (NM_011504, intron 16 of 18)	42548.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	20.19	20.63	47.35	38.61	45.41	26.03	22.26	42.36	49.96	25.61	52.26	39.78
Merged-chr7-29007964-2	chr7	29007836	29008036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 101 of 105)	PB1D9|SINE|Alu	25082.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	20.59	25.4	23.39	24.13	26.18	25.4	29.56	27.34	5.51	4.02	6.03	8.14
Merged-chr1-52366522-1	chr1	52366422	52366622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133290.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.5	1.71	5.63	19.23	11.92	17.27	36.62	0.79	2.51	1.0	0.63
Merged-chr19-4099995-3	chr19	4099896	4100096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-2.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	39.17	18.86	45.07	16.49	35.59	26.97	16.61	31.88	48.98	41.17	44.72	38.22
Merged-chr9-45405801-3	chr9	45405697	45405897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-280.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	91.26	70.93	67.31	37.0	92.46	108.18	58.79	45.56	73.76	88.87	64.32	33.83
Merged-chr6-145306883-3	chr6	145306789	145306989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56337.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	97.31	76.72	100.4	126.29	131.32	118.22	97.66	140.86	211.44	188.79	308.02	139.72
Merged-chr9-7558374-3	chr9	7558277	7558477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008611)	promoter-TSS (NM_008611)	-52.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	17.77	20.37	27.38	20.91	32.73	37.94	39.2	69.28	51.93	33.14	72.86	24.75
Merged-chr3-75276710-3	chr3	75276571	75276771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6593.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	36.34	32.45	43.35	40.62	34.77	33.87	37.87	41.94	33.44	42.68	45.73	18.8
Merged-chr17-35673805-3	chr17	35673678	35673878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-35.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	21.0	29.93	27.38	29.36	44.18	38.88	19.6	37.21	58.81	50.21	66.83	39.47
Merged-chr5-118478388-3	chr5	118478287	118478487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82332.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	43.21	54.58	37.65	31.37	64.23	72.44	46.84	43.46	49.96	42.68	56.28	36.97
Merged-chr14-16244550-1	chr14	16244450	16244650	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-1219.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	2.83	4.78	3.42	1.21	2.45	3.45	5.31	2.72	47.4	44.69	33.16	22.24
Merged-chr15-81083477-3	chr15	81083358	81083558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	21589.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	56.53	62.63	85.0	43.44	47.46	90.0	52.48	56.92	57.04	74.81	75.87	44.8
Merged-chr17-35135265-4	chr17	35135162	35135362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252468)	promoter-TSS (NM_001252468)	84.0	NM_057171	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	39.17	63.89	39.93	34.59	32.73	68.67	35.21	29.58	52.32	41.67	37.69	34.46
Merged-chr9-56592868-3	chr9	56592762	56592962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42786.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	27.05	38.99	39.36	24.53	34.36	40.76	21.26	33.56	37.76	24.6	44.22	27.25
Merged-chr1-192093086-3	chr1	192092998	192093198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	-499.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	20.19	21.38	23.96	20.11	24.96	21.32	12.95	22.82	26.36	25.11	39.7	14.72
Merged-chr7-96951528-3	chr7	96951442	96951642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	15.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	116.29	106.9	106.68	76.42	129.69	148.32	94.67	118.88	138.47	127.53	173.86	90.22
Merged-chr18-58536222-3	chr18	58536114	58536314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20026.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	47.24	37.98	36.51	68.78	51.96	62.09	45.51	56.33	34.42	39.67	37.18	27.88
Merged-chr6-117891625-3	chr6	117891523	117891723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8717.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	36.75	36.72	21.68	22.52	37.64	32.3	17.94	17.27	58.61	29.62	44.22	23.81
Merged-chrX-109108585-3	chrX	109108485	109108685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	13178.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	18.17	14.84	29.09	23.33	24.55	24.15	17.27	21.79	26.75	17.57	24.62	20.36
Merged-chr7-43608188-3	chr7	43608100	43608300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1031.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	51.69	32.95	47.92	43.84	45.41	70.87	52.82	48.11	49.17	37.16	46.23	20.68
Merged-chr9-65676505-3	chr9	65676402	65676602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-46.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	67.84	66.15	79.29	57.92	87.14	83.1	49.83	71.69	98.34	65.27	109.04	47.3
Merged-chr3-105687618-3	chr3	105687517	105687717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-46.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	133.66	145.38	147.18	103.77	146.05	156.47	94.67	113.3	174.86	194.82	190.44	123.43
Merged-chr3-106722178-3	chr3	106722084	106722284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028081, intron 1 of 2)	CpG	502.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	53.3	61.37	69.03	74.41	74.05	111.95	61.78	65.47	106.8	119.5	125.62	73.3
Merged-chr4-131910774-3	chr4	131910678	131910878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102393, intron 3 of 4)	RMER15-int|LTR|ERVL	9251.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	64.61	48.54	66.17	79.23	101.46	79.33	97.99	112.57	107.79	71.8	80.4	50.12
Merged-chr17-81065044-3	chr17	81064956	81065156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	29.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	70.26	78.98	69.03	83.26	101.46	122.29	97.66	77.97	100.31	105.44	173.86	63.28
Merged-chr7-19093997-3	chr7	19093885	19094085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011383)	promoter-TSS (NM_011383)	-559.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	73.49	80.49	63.32	76.02	57.68	97.21	48.5	70.01	110.15	104.94	134.67	57.01
Merged-chr18-37935578-3	chr18	37935486	37935686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305981)	promoter-TSS (NM_001305981)	-110.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	194.63	236.94	176.27	218.39	210.28	259.95	170.74	207.7	241.34	221.93	295.46	135.33
Merged-chr18-62182497-3	chr18	62182387	62182587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2387.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	17.77	28.17	26.24	22.52	32.32	41.39	20.59	24.7	29.9	39.16	31.15	14.72
Merged-chr18-65697796-3	chr18	65697701	65697901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177028)	promoter-TSS (NM_177028)	-467.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	68.24	48.8	72.45	96.93	105.14	67.1	77.73	123.98	108.38	61.76	124.11	85.84
Merged-chr3-36000666-3	chr3	36000584	36000784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023644)	promoter-TSS (NM_023644)	-6.0	NM_023644	72039.0	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	75.91	85.77	96.41	109.8	119.46	127.94	102.64	133.12	164.63	164.69	215.57	107.76
Merged-chr5-112325414-3	chr5	112325313	112325513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	26.25	28.67	27.38	21.32	33.14	44.84	21.59	20.02	56.45	40.17	84.42	37.59
Merged-chr11-97799626-3	chr11	97799547	97799747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	82.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	53.3	47.29	62.75	46.66	49.09	49.86	39.86	55.35	44.06	27.62	54.27	36.65
Merged-chr15-101173954-3	chr15	101173881	101174081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-91.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	44.42	51.06	51.34	22.93	42.96	78.39	16.94	35.16	84.18	65.78	92.96	32.89
Merged-chr8-26978409-2	chr8	26978309	26978509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110508, intron 2 of 2)	CpG-13923	1073.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	17.36	15.59	19.97	4.42	21.27	11.29	12.95	13.74	18.69	38.66	26.63	20.36
Merged-chr14-75164062-3	chr14	75163976	75164176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	27651.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	39.57	24.65	25.1	46.66	33.14	30.73	25.91	41.13	39.53	38.66	71.35	33.83
Merged-chr2-52998135-3	chr2	52998039	52998239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140271.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	118.72	93.07	64.46	39.01	127.64	165.57	98.65	79.74	105.82	143.6	134.16	46.36
Merged-chr19-21777281-3	chr19	21777202	21777402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1038.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	38.76	38.23	75.87	35.8	47.87	49.23	55.8	90.9	42.88	65.78	76.88	39.78
Merged-chr17-29095501-3	chr17	29095404	29095604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007669, intron 1 of 2)	CpG	1735.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	80.36	97.84	98.12	75.21	127.23	152.08	110.95	102.51	136.5	171.22	170.84	96.8
Merged-chr17-85019083-3	chr17	85018986	85019186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-9261.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	60.97	42.76	35.37	37.0	63.82	74.0	41.52	64.07	55.86	78.33	74.87	46.36
Merged-chr8-61584849-3	chr8	61584759	61584959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	L2a|LINE|L2	6310.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	67.43	42.51	47.92	50.27	52.77	57.07	53.48	76.91	67.86	50.21	51.25	49.81
Merged-chr2-160620235-5	chr2	160620129	160620329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25668.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	64.2	65.4	73.02	57.51	68.32	74.94	79.72	61.15	80.25	97.91	72.36	69.86
Merged-chr11-30772439-3	chr11	30772333	30772533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	CpG	658.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	43.21	41.0	35.94	28.15	45.82	55.19	38.86	50.78	36.39	28.12	62.31	27.25
Merged-chrX-142698332-3	chrX	142698241	142698441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	16615.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	27.05	15.09	23.39	24.53	19.64	26.65	25.24	28.54	24.59	14.06	27.64	17.23
Merged-chr2-160268107-3	chr2	160268022	160268222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59372.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	50.07	43.26	102.68	88.08	42.14	40.14	74.74	92.33	37.76	40.67	50.25	41.98
Merged-chr7-130533502-3	chr7	130533386	130533586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162855, intron 10 of 10)	intron (NM_001162855, intron 10 of 10)	-13117.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	59.36	52.82	75.3	52.69	42.96	77.77	33.22	56.41	80.84	82.35	78.89	45.42
Merged-chr10-67608314-3	chr10	67608210	67608410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36351.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	30.28	36.72	19.97	12.07	53.18	105.67	46.17	12.84	45.83	41.67	25.12	10.65
Merged-chr2-84638654-3	chr2	84638555	84638755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	10825.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	25.04	24.15	37.08	39.42	33.14	38.26	35.54	31.6	36.19	31.13	34.17	25.37
Merged-chr10-67205102-3	chr10	67204994	67205194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	19344.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	39.57	32.95	23.96	49.87	43.77	47.04	46.84	51.56	50.75	38.16	72.86	39.78
Merged-chr2-32857821-3	chr2	32857733	32857933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10596.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	27.46	22.13	30.8	8.04	29.46	29.79	14.95	20.78	18.69	36.65	22.61	15.35
Merged-chr12-55421440-3	chr12	55421344	55421544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	22619.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	27.05	19.37	34.23	20.11	47.87	39.2	21.59	39.95	32.26	35.65	55.27	29.13
Merged-chr1-58725976-3	chr1	58725891	58726091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-4561.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	41.19	62.88	48.49	16.89	52.37	102.54	28.57	27.7	89.49	77.32	77.88	25.69
Merged-chr4-119125717-3	chr4	119125624	119125824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	16979.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	44.01	36.22	63.89	59.93	47.05	68.05	50.82	73.6	97.56	78.83	145.72	55.45
Merged-chr16-49792669-3	chr16	49792545	49792745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63009.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	89.64	60.37	79.86	57.51	73.64	117.59	83.71	73.12	94.41	94.9	106.53	37.28
Merged-chr5-90689951-3	chr5	90689849	90690049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49422.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	84.8	71.18	136.91	135.14	159.96	159.92	196.65	126.7	125.88	121.01	164.81	115.91
Merged-chr1-131087070-3	chr1	131086974	131087174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	10769.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	41.19	47.54	62.75	54.7	65.46	66.48	57.47	77.33	84.97	64.77	93.96	67.35
Merged-chr5-88509250-3	chr5	88509173	88509373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18624.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	52.09	53.07	67.31	55.91	73.23	38.26	45.18	57.5	88.71	66.28	86.93	46.99
Merged-chr16-23135973-3	chr16	23135870	23136070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8240.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	20.19	10.82	21.68	8.85	15.96	19.76	14.62	11.16	27.54	21.59	33.67	14.72
Merged-chr14-34297159-3	chr14	34297054	34297254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13363.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	38.36	23.64	34.23	40.62	32.73	31.04	22.26	30.98	29.7	32.64	23.62	28.51
Merged-chr9-75414488-1	chr9	75414388	75414588	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040719, intron 3 of 3)	intron (NR_040719, intron 3 of 3)	4304.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	0.0	1.01	0.0	0.0	1.23	3.76	0.0	0.03	29.31	19.08	21.61	14.1
Merged-chr6-17586949-1	chr6	17586849	17587049	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-50061.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.81	0.5	0.0	2.41	0.41	0.0	2.33	0.93	46.62	32.64	57.28	23.81
Merged-chr16-84606309-2	chr16	84606202	84606402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73487.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	15.34	25.66	36.51	17.7	4.09	11.29	4.65	3.56	63.53	31.13	36.68	26.63
Merged-chr3-55112139-3	chr3	55112071	55112271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144895)	promoter-TSS (NM_144895)	5.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	77.12	74.7	83.86	69.58	66.27	82.78	97.33	85.82	90.67	115.48	129.64	52.32
Merged-chr2-30415597-3	chr2	30415494	30415694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138748)	promoter-TSS (NM_138748)	154.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	115.49	104.89	110.67	122.67	95.73	105.67	55.47	64.15	93.43	94.4	136.68	67.98
Merged-chr4-102656730-3	chr4	102656633	102656833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66890.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	24.63	22.13	15.4	28.96	20.05	22.89	29.9	19.57	35.8	18.08	45.73	30.39
Merged-chr1-46853627-3	chr1	46853531	46853731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-13.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	204.72	249.26	159.16	166.51	207.82	212.6	178.04	200.78	277.33	251.55	272.85	138.15
Merged-chr2-52513026-3	chr2	52512918	52513118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	45593.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	53.7	61.12	58.19	60.73	54.82	120.1	66.77	59.05	98.15	74.31	86.93	36.03
Merged-chr10-80561596-5	chr10	80561506	80561706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-46.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	21.4	19.12	15.4	18.5	15.55	20.7	27.57	17.8	16.92	32.13	23.11	26.0
Merged-chr10-44539083-3	chr10	44538994	44539194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80346.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	43.21	48.8	46.78	30.57	33.96	53.31	33.22	24.79	36.58	46.19	32.66	23.81
Merged-chr2-154597621-3	chr2	154597522	154597722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021534, intron 1 of 3)	MTC|LTR|ERVL-MaLR	6051.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	34.73	31.44	40.5	42.23	28.64	51.74	43.18	39.56	42.09	25.11	44.72	33.52
Merged-chr5-141004439-4	chr5	141004322	141004522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3826.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	32.3	34.21	37.08	28.96	27.41	37.63	39.2	33.03	36.39	25.11	31.66	30.39
Merged-chr19-4300478-3	chr19	4300415	4300615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5707.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	81.97	64.14	96.98	91.3	117.41	98.15	90.02	115.18	95.0	87.87	103.01	58.89
Merged-chr18-3336903-1	chr18	3336803	3337003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_033457, exon 1 of 2)	non-coding (NR_033457, exon 1 of 2)	487.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	33.92	34.46	25.1	33.38	27.0	37.32	36.54	34.12	37.76	48.2	46.73	40.41
Merged-chr1-23256786-3	chr1	23256689	23256889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15480.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	54.11	69.67	56.48	62.74	33.14	61.15	66.1	61.26	59.6	54.73	88.94	45.11
Merged-chrX-94366940-3	chrX	94366855	94367055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026673)	promoter-TSS (NM_026673)	-155.0	NM_026673	68316.0	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding	106.6	129.29	138.62	154.44	146.05	180.62	108.62	132.31	183.9	186.78	183.41	129.38
Merged-chr6-83914396-3	chr6	83914292	83914492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008717)	promoter-TSS (NM_008717)	39.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	55.32	52.07	55.9	45.05	55.64	52.99	27.57	38.07	70.81	48.2	66.33	34.46
Merged-chr7-110061548-3	chr7	110061425	110061625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-177.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	212.8	223.61	230.46	223.62	261.01	301.97	160.44	236.61	335.55	365.53	326.11	179.19
Merged-chr6-28480183-3	chr6	28480087	28480287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019776)	promoter-TSS (NM_019776)	-161.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	313.75	355.66	365.09	359.16	408.69	452.8	307.59	423.93	431.53	492.57	579.36	293.84
Merged-chr2-25622040-3	chr2	25621931	25622131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109993)	promoter-TSS (NM_001109993)	-26.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	74.3	93.82	85.0	85.27	95.73	111.0	67.43	102.62	94.21	117.99	114.57	62.97
Merged-chr16-76225918-3	chr16	76225825	76226025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103312.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	17.36	13.58	26.81	17.29	15.55	18.5	27.9	37.43	27.14	20.08	32.66	15.04
Merged-chr11-114668504-3	chr11	114668385	114668585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-58.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	32.3	37.98	21.68	27.35	38.86	42.02	28.23	29.89	56.25	47.2	40.7	28.82
Merged-chr13-23761511-3	chr13	23761420	23761620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	-271.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	173.23	164.75	156.88	163.29	173.46	267.16	124.56	159.0	265.33	321.35	280.39	174.18
Merged-chr7-97332198-3	chr7	97332067	97332267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039039)	promoter-TSS (NM_001039039)	-156.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	126.39	131.05	150.03	120.26	136.23	154.28	131.21	141.51	174.07	171.22	211.04	67.67
Merged-chr5-23418397-5	chr5	23418363	23418563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15890.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	31.5	48.29	37.65	50.68	49.5	45.47	51.15	40.12	37.57	33.14	49.24	34.15
Merged-chr3-116613973-3	chr3	116613873	116614073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289571, exon 7 of 16)	exon (NM_001289571, exon 7 of 16)	614.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	25.04	30.69	49.63	51.08	31.09	26.97	33.55	46.93	19.87	32.13	41.2	15.98
Merged-chr1-161876870-3	chr1	161876752	161876952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357401)	promoter-TSS (NM_001357401)	-170.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	350.09	390.87	421.0	457.3	384.97	433.04	364.06	421.88	517.29	558.84	731.11	349.29
Merged-chr17-23673667-3	chr17	23673563	23673763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181821)	promoter-TSS (NM_181821)	55.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	37.15	54.58	38.22	69.18	52.37	38.26	62.45	46.49	44.06	54.73	64.32	43.23
Merged-chr5-143464566-3	chr5	143464462	143464662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	69.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	131.64	89.54	98.69	86.47	96.96	133.58	57.13	76.09	100.31	122.51	134.16	84.9
Merged-chr2-90579264-3	chr2	90579145	90579345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1402.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	57.34	57.35	49.06	37.4	47.87	84.35	41.52	44.8	72.97	111.97	105.02	39.47
Merged-chr15-88751936-2	chr15	88751855	88752055	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181412, intron 1 of 2)	CpG	244.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	12.92	22.89	12.55	12.07	20.46	28.54	22.26	19.68	30.09	37.16	40.7	23.81
Merged-chr16-36999769-3	chr16	36999637	36999837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9270.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	22.21	13.33	33.66	28.56	14.73	13.17	18.6	19.57	21.83	21.59	21.1	12.84
Merged-chrX-106027189-3	chrX	106027090	106027290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109757)	promoter-TSS (NM_001109757)	-34.0	NM_001109757	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	50.88	59.11	66.74	62.74	69.55	70.87	46.5	53.5	62.15	51.21	103.01	49.81
Merged-chr2-14250353-3	chr2	14250252	14250452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-10651.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	81.57	63.64	82.15	90.9	73.64	99.4	57.13	102.14	73.56	68.79	91.95	51.06
Merged-chr19-45058467-3	chr19	45058354	45058554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10878.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	89.64	74.2	66.17	68.37	78.96	90.62	53.48	66.42	96.18	97.41	73.86	72.36
Merged-chr19-47263858-1	chr19	47263758	47263958	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164717, exon 14 of 14)	3' UTR (NM_001164717, exon 14 of 14)	9731.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.81	1.51	1.71	0.0	0.82	0.31	0.0	0.0	14.55	5.52	17.08	14.41
Merged-chr11-46436943-3	chr11	46436848	46437048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025426)	promoter-TSS (NM_025426)	1.0	NM_001104530	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	78.74	56.09	54.19	91.7	79.37	81.84	80.72	81.76	96.57	77.32	119.59	56.7
Merged-chr13-74208655-3	chr13	74208561	74208761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	39.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	72.68	58.61	95.27	106.18	97.78	87.8	69.76	118.6	86.54	114.98	149.24	72.99
Merged-chr4-132804632-3	chr4	132804532	132804732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8268.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	90.05	78.73	95.84	72.4	97.37	131.07	70.42	85.96	105.82	89.88	131.65	54.82
Merged-chr5-29736429-2	chr5	29736322	29736522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028426)	promoter-TSS (NR_028426)	-486.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	15.34	15.34	14.83	28.15	20.86	27.91	26.57	18.36	26.16	35.65	24.12	17.86
Merged-chr10-115251420-3	chr10	115251336	115251536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	57.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	111.85	55.59	62.18	68.78	88.37	132.64	53.15	77.89	122.34	121.51	150.74	85.52
Merged-chr10-39731496-3	chr10	39731405	39731605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	502.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	78.74	87.28	82.15	72.8	96.96	96.58	76.07	120.08	111.13	112.97	162.3	70.8
Merged-chr9-66124862-3	chr9	66124726	66124926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	60.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	86.82	92.56	103.25	63.15	101.46	132.01	77.73	82.6	124.9	139.59	134.67	78.0
Merged-chr6-83326135-3	chr6	83326066	83326266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145571, exon 1 of 6)	5' UTR (NM_145571, exon 1 of 6)	127.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	56.13	84.01	83.29	78.43	69.14	70.55	97.99	56.58	63.53	76.82	57.79	57.01
Merged-chr15-86191630-3	chr15	86191523	86191723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5482.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	131.23	106.14	98.12	103.37	132.14	153.96	155.12	161.05	125.68	115.99	162.8	99.62
Merged-chr13-5888968-3	chr13	5888866	5889066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27477.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	49.67	47.79	66.17	61.54	35.59	35.43	27.9	54.14	47.01	38.66	50.75	38.85
Merged-chr19-11065385-3	chr19	11065283	11065483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-14817.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	28.67	21.88	27.38	29.36	47.87	26.34	30.89	33.5	26.95	18.08	33.16	19.11
Merged-chr11-115413382-3	chr11	115413293	115413493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347645)	TTS (NM_001347645)	6526.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	69.45	47.54	41.07	51.48	49.91	68.99	23.92	36.22	61.56	70.8	60.3	36.97
Merged-chr12-44209280-1	chr12	44209180	44209380	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013760, intron 1 of 2)	intron (NM_013760, intron 1 of 2)	788.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	18.17	22.64	9.13	10.86	16.77	22.89	14.62	12.39	25.18	19.58	14.57	13.47
Merged-chr14-73139949-3	chr14	73139841	73140041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2569.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	25.84	17.61	19.97	14.08	27.82	40.14	40.19	31.23	29.11	30.63	34.67	32.58
Merged-chr10-117323975-3	chr10	117323876	117324076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31108.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	22.21	21.63	47.35	39.82	34.36	26.34	23.25	27.76	43.47	38.16	56.78	23.81
Merged-chr14-15066577-3	chr14	15066491	15066691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	245776.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	52.09	39.74	72.45	92.91	38.86	58.32	103.64	108.17	95.2	60.25	81.4	68.92
Merged-chr3-103206591-3	chr3	103206497	103206697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34942.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	136.48	165.25	172.28	141.17	121.5	232.36	163.76	147.45	202.39	211.89	235.66	129.07
Merged-chr5-123884612-3	chr5	123884517	123884717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4597.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	80.36	58.35	51.34	49.07	60.96	71.49	33.88	43.68	74.94	67.78	50.25	58.89
Merged-chr7-25267506-3	chr7	25267417	25267617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-182.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	251.56	234.42	228.75	246.15	252.83	296.33	213.92	242.3	297.98	245.03	294.96	154.44
Merged-chr8-92854878-3	chr8	92854781	92854981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	-452.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	50.47	52.07	67.88	58.32	72.41	94.7	49.49	59.61	80.05	72.81	83.91	47.3
Merged-chr16-30977427-3	chr16	30977337	30977537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	103995.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	29.07	29.18	26.81	31.37	30.68	43.9	18.27	31.63	40.71	33.14	55.78	22.24
Merged-chr4-63401177-3	chr4	63401077	63401277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	2268.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	52.49	33.45	42.21	18.1	61.77	54.88	43.18	48.48	57.63	44.69	60.3	36.97
Merged-chr11-18925106-3	chr11	18925012	18925212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 8 of 11)	intron (NM_010789, intron 8 of 11)	93857.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	48.46	57.85	55.33	51.48	57.27	48.92	46.17	76.96	61.37	54.23	71.86	31.95
Merged-chr14-50062375-1	chr14	50062275	50062475	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22304.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	1.62	2.01	0.57	4.02	2.05	2.2	1.99	1.18	17.9	30.63	41.71	22.24
Merged-chr12-8641010-3	chr12	8640918	8641118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-33116.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	85.6	90.55	96.41	109.8	101.87	126.37	125.89	104.83	105.62	115.99	114.06	57.64
Merged-chr18-24436701-3	chr18	24436585	24436785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7515.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	44.82	23.64	37.08	27.75	43.36	52.37	35.87	47.22	42.29	28.62	48.24	39.47
Merged-chr1-7395704-3	chr1	7395599	7395799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	306779.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	80.36	67.91	86.71	73.6	90.0	109.44	70.75	73.12	98.34	108.45	104.52	83.96
Merged-chr15-5302577-3	chr15	5302468	5302668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58381.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	35.94	51.06	63.89	68.78	48.68	56.76	45.84	62.22	49.37	44.19	68.34	51.06
Merged-chr3-89196700-3	chr3	89196597	89196797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6228.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	92.47	68.42	94.13	64.75	79.78	93.76	68.43	94.54	104.05	91.89	109.04	65.47
Merged-chr12-55488907-3	chr12	55488812	55489012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010907)	TTS (NM_010907)	3735.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	97.31	91.05	161.44	140.37	134.6	123.23	160.77	177.9	131.19	129.04	192.45	95.23
Merged-chr3-69316763-3	chr3	69316619	69316819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-199.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	106.6	135.83	92.41	126.29	91.23	116.96	103.31	85.04	155.97	159.17	209.54	94.29
Merged-chr4-43419986-3	chr4	43419912	43420112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9122.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	33.11	26.91	28.52	26.14	16.77	24.15	21.26	28.21	34.81	20.08	21.1	20.99
Merged-chr16-49801669-3	chr16	49801588	49801788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53966.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	49.26	35.72	39.36	61.54	79.78	63.97	58.13	92.24	88.51	59.25	81.4	56.07
Merged-chr15-35938093-3	chr15	35937965	35938165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053071, intron 1 of 3)	CpG	181.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	31.09	24.15	18.83	27.75	15.14	36.06	35.87	26.02	30.29	24.6	36.68	32.27
Merged-chr4-12533113-3	chr4	12533020	12533220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-361105.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	71.47	77.47	66.74	62.34	62.18	66.48	50.16	79.01	105.82	71.8	71.35	42.29
Merged-chr16-90197573-3	chr16	90197520	90197720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23122.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	38.36	52.82	44.5	44.64	48.68	56.76	29.56	40.32	64.32	64.27	99.99	40.72
Merged-chr2-120154664-3	chr2	120154539	120154739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-64.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	181.71	159.22	174.56	183.81	186.96	214.48	128.55	161.47	201.8	211.39	229.63	129.69
Merged-chr17-13760257-3	chr17	13760170	13760370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010806)	promoter-TSS (NM_010806)	-271.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	16.96	19.12	19.4	21.32	22.91	33.87	21.26	35.5	29.5	35.15	44.72	24.43
Merged-chr12-3297820-3	chr12	3297701	3297901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	12168.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	47.24	52.57	53.62	43.44	45.0	66.79	59.79	23.38	78.09	82.35	96.48	38.85
Merged-chr9-58253153-3	chr9	58253053	58253253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026942)	promoter-TSS (NM_026942)	-11.0	NR_028146	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	102.56	85.02	79.29	93.31	78.96	105.67	58.13	71.83	117.03	110.46	154.26	52.63
Merged-chr7-87925610-3	chr7	87925531	87925731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	341463.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	14.54	15.34	18.83	34.59	38.46	31.36	50.16	53.97	36.19	29.12	33.16	26.63
Merged-chr3-79153144-3	chr3	79153054	79153254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7279.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	96.91	80.74	94.7	91.7	123.55	190.34	121.24	112.6	126.67	161.18	145.72	77.69
Merged-chr7-126701238-3	chr7	126701126	126701326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301374, intron 6 of 10)	intron (NM_001301374, intron 6 of 10)	2994.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	37.96	33.2	22.25	21.72	27.41	57.07	18.6	18.73	47.99	38.16	48.74	22.56
Merged-chr1-88095086-3	chr1	88094973	88095173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	72.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	32.71	20.37	39.93	25.34	33.14	25.09	27.24	37.18	42.68	33.64	38.19	22.56
Merged-chr7-16614702-3	chr7	16614613	16614813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172739, exon 1 of 7)	5' UTR (NM_172739, exon 1 of 7)	280.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	17.77	16.1	17.68	31.37	25.77	20.38	14.62	18.39	32.06	37.66	32.16	21.93
Merged-chr2-26409209-3	chr2	26409112	26409312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290437)	promoter-TSS (NM_001290437)	7.0	NM_033134	64436.0	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	102.56	75.71	103.82	71.99	105.55	137.97	79.39	111.87	107.0	102.93	160.79	80.51
Merged-chr3-38202052-2	chr3	38201943	38202143	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6076.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.02	1.26	6.28	3.22	19.23	25.4	40.52	53.61	33.44	23.1	37.69	26.0
Merged-chrX-137049527-3	chrX	137049420	137049620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146261)	promoter-TSS (NM_146261)	-74.0	NM_146261	245622.0	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	39.57	38.74	35.94	41.43	52.37	50.8	48.5	62.94	60.58	54.23	96.48	41.04
Merged-chr18-32162920-3	chr18	32162762	32162962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011946)	promoter-TSS (NM_011946)	-227.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	157.88	149.91	165.43	193.86	182.05	235.81	138.85	205.21	274.18	339.93	322.09	223.36
Merged-chr5-16553465-3	chr5	16553368	16553568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-27.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	43.21	25.91	33.09	61.13	50.73	50.49	70.42	98.8	64.51	56.74	98.49	50.75
Merged-chr11-6274944-3	chr11	6274836	6275036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134020)	promoter-TSS (NM_134020)	-99.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	88.84	62.63	74.73	85.27	73.64	109.44	41.85	83.61	98.74	72.3	108.03	68.29
Merged-chr17-24779677-2	chr17	24779579	24779779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24703.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	35.53	39.49	38.79	41.43	67.5	78.71	60.79	45.81	1.18	0.0	0.0	0.63
Merged-chr13-99196440-3	chr13	99196366	99196566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	11643.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	19.79	18.61	35.94	34.99	24.96	30.1	38.86	55.09	39.73	19.58	37.18	25.37
Merged-chr7-38085040-3	chr7	38084924	38085124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	22466.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	211.19	212.29	209.36	185.01	283.92	322.04	200.63	237.14	359.74	400.18	505.5	213.33
Merged-chr18-36512414-3	chr18	36512308	36512508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3397.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	46.84	49.3	50.2	55.5	69.55	80.27	50.82	57.0	96.18	87.37	76.88	39.78
Merged-chr7-96976179-3	chr7	96976075	96976275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	ORR1D2|LTR|ERVL-MaLR	24648.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	25.04	14.59	18.25	32.18	49.09	32.93	42.52	54.17	31.27	25.61	37.69	27.25
Merged-chr13-16012410-3	chr13	16012319	16012519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008380, intron 2 of 4)	intron (NM_008380, intron 2 of 4)	568.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	24.63	22.89	37.08	28.56	39.27	26.65	28.9	26.89	43.66	21.09	45.73	20.68
Merged-chr10-40212601-3	chr10	40212496	40212696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34383.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	70.66	54.08	45.64	62.74	64.64	96.58	53.15	67.49	69.04	76.32	93.96	46.36
Merged-chr6-88446521-3	chr6	88446427	88446627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023060)	promoter-TSS (NM_023060)	12.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	16.96	17.1	18.83	17.7	21.68	30.1	11.29	23.33	34.42	26.61	35.17	15.98
Merged-chr17-86128462-3	chr17	86128350	86128550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 5 of 20)	L1MC4|LINE|L1	16725.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	100.14	83.0	151.17	144.39	90.82	117.28	93.01	136.43	64.71	59.25	119.59	52.94
Merged-chr6-129400094-3	chr6	129399980	129400180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019985, exon 2 of 6)	exon (NM_019985, exon 2 of 6)	2783.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	126.39	100.36	139.19	150.82	154.64	200.69	126.89	186.34	180.36	153.64	222.6	96.8
Merged-chr2-58480943-3	chr2	58480834	58481034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	80476.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	51.28	38.99	64.46	47.86	41.32	46.72	36.21	55.29	47.4	59.75	62.81	39.78
Merged-chr9-45248280-1	chr9	45248180	45248380	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18427.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	3.63	7.29	2.28	4.42	7.36	5.64	12.62	11.41	10.42	11.55	4.52	8.14
Merged-chr2-160646546-3	chr2	160646525	160646725	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009408, exon 2 of 21)	exon (NM_009408, exon 2 of 21)	728.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	19.38	11.82	18.83	12.47	9.82	26.97	15.94	7.15	22.42	26.61	8.54	23.49
Merged-chr15-84184203-3	chr15	84184116	84184316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8017.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	19.79	19.12	33.09	20.11	15.55	20.07	26.24	23.44	25.18	22.59	39.19	14.41
Merged-chr16-70803721-3	chr16	70803628	70803828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187303.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	57.74	41.0	57.62	62.74	62.59	71.81	71.75	74.16	86.35	59.25	87.43	34.46
Merged-chr2-94437077-3	chr2	94436968	94437168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1118.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	18.57	13.83	20.54	20.91	19.23	34.81	22.26	44.78	26.16	34.65	35.68	24.43
Merged-chr19-14635467-3	chr19	14635378	14635578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37295.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	31.09	22.89	21.11	40.22	33.96	34.18	34.21	36.42	34.62	26.61	39.7	19.11
Merged-chr8-124230059-3	chr8	124229956	124230156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1338.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	46.03	46.03	75.3	35.8	60.55	54.25	32.55	42.28	64.91	44.69	81.9	40.72
Merged-chr12-108990607-3	chr12	108990527	108990727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	77590.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	90.85	58.35	123.79	104.97	123.96	97.52	105.96	157.4	88.71	82.35	153.26	77.38
Merged-chr1-154786406-3	chr1	154786300	154786500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60480.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	31.09	21.63	25.67	12.07	32.32	31.36	12.62	28.85	29.5	40.17	26.63	18.17
Merged-chr16-96082541-3	chr16	96082443	96082643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-115.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	82.37	85.27	75.3	51.08	66.68	90.0	56.8	105.28	94.61	108.96	136.17	64.22
Merged-chr15-72810133-3	chr15	72810073	72810273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	151.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	15.34	39.74	27.38	25.74	31.91	32.3	36.21	17.33	29.9	48.7	36.68	33.21
Merged-chr11-8575549-3	chr11	8575463	8575663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	88972.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	55.72	53.58	39.36	50.27	47.87	61.46	48.5	70.4	64.12	73.31	41.71	44.48
Merged-chr1-36273491-3	chr1	36273396	36273596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-71.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	162.33	146.14	160.3	193.06	158.32	181.25	128.22	132.98	177.02	191.8	227.12	114.66
Merged-chr7-101900503-1	chr7	101900403	101900603	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027532)	TTS (NM_027532)	3282.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	17.77	11.32	6.28	8.85	15.14	9.72	14.28	16.21	11.41	13.56	6.53	13.78
Merged-chr2-157457629-3	chr2	157457505	157457705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 4 of 13)	CpG	33312.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	36.75	33.2	17.68	29.36	53.59	53.31	34.55	32.05	32.85	56.74	45.22	28.51
Merged-chr15-50854600-3	chr15	50854495	50854695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	34454.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	45.23	35.97	43.93	42.63	41.32	33.87	41.52	62.24	39.34	34.65	48.24	14.41
Merged-chr11-78261616-3	chr11	78261509	78261709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002004)	promoter-TSS (NM_001002004)	-145.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	107.81	103.88	95.27	82.05	117.41	112.89	73.74	81.48	131.58	149.63	157.78	99.31
Merged-chr16-49853158-3	chr16	49853058	49853258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2496.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	23.82	24.4	52.48	29.76	35.59	40.45	30.56	42.14	39.34	42.18	41.71	20.36
Merged-chr12-32642668-3	chr12	32642560	32642760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177675.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	58.15	42.26	59.9	56.31	44.18	56.13	24.91	45.17	56.65	39.67	57.79	28.82
Merged-chr16-23609899-3	chr16	23609806	23610006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-13.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	83.18	79.99	89.56	76.42	66.27	83.41	39.2	64.96	99.72	92.39	82.41	50.12
Merged-chr8-106150319-3	chr8	106150242	106150442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	-12.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	74.7	59.86	85.0	52.29	82.64	95.64	49.16	74.78	116.24	85.86	139.19	61.09
Merged-chr9-123529683-3	chr9	123529576	123529776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-77.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	283.46	258.07	226.47	226.04	226.23	293.19	187.68	251.61	316.67	301.77	373.85	180.13
Merged-chr5-4530470-3	chr5	4530350	4530550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227766.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	22.61	16.85	34.23	30.97	73.23	87.8	64.11	69.34	75.33	108.96	108.03	50.44
Merged-chr10-118095927-1	chr10	118095827	118096027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-45860.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	17.77	10.06	26.24	8.45	21.68	22.89	37.54	28.23	2.75	4.02	5.02	4.39
Merged-chr18-53158823-3	chr18	53158729	53158929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17463.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	24.23	23.9	23.96	26.55	25.36	26.03	17.61	31.18	36.98	25.11	64.82	23.81
Merged-chr5-20882330-3	chr5	20882231	20882431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	-122.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	365.03	376.54	440.96	415.47	419.74	524.92	355.09	432.25	445.11	470.47	543.18	320.16
Merged-chr17-69144555-3	chr17	69144471	69144671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-12173.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	23.42	17.61	55.33	42.63	17.59	28.22	45.51	63.2	25.57	9.04	33.16	15.66
Merged-chr16-36633283-3	chr16	36633195	36633395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32782.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	17.77	17.36	28.52	6.84	18.0	33.24	13.95	16.88	35.21	33.14	30.65	15.66
Merged-chr11-107132171-3	chr11	107132038	107132238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176850)	promoter-TSS (NM_176850)	-216.0	NM_001359590	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	37.55	34.21	31.38	49.47	32.73	43.9	26.24	33.08	62.35	46.7	68.34	22.56
Merged-chrUn_GL456392-23116-1	chrUn_GL456392	23016	23216	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	31.47	34.14	33.16	36.03
Merged-chr9-7838260-3	chr9	7838170	7838370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1213.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	24.23	36.47	25.1	12.87	30.68	58.32	24.25	10.15	71.99	40.67	32.66	17.23
Merged-chrX-162888366-3	chrX	162888263	162888463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025932)	promoter-TSS (NM_025932)	99.0	NM_025932	67043.0	Mm.44207	NM_025932	ENSMUSG00000031357	Syap1	2010110O17Rik|AW011796|BSTA	synapse associated protein 1	protein-coding	45.23	52.32	40.5	49.47	32.73	54.25	48.5	48.53	47.4	54.23	72.86	31.01
Merged-chr3-121570849-3	chr3	121570740	121570940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38496.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	68.24	44.52	71.31	53.09	85.91	111.63	61.12	54.9	98.74	133.56	96.98	60.46
Merged-chr6-42382270-3	chr6	42382180	42382380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9012.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	136.89	100.86	127.78	171.34	174.28	109.44	120.91	177.28	146.34	117.99	228.63	118.41
Merged-chr8-105858707-3	chr8	105858615	105858815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1818.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	47.24	33.96	50.77	49.07	65.05	74.32	27.24	53.24	52.52	45.69	72.86	41.04
Merged-chr1-39577496-3	chr1	39577396	39577596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-149.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	184.13	203.74	169.43	178.58	192.28	277.2	225.88	195.93	227.17	249.55	321.09	136.9
Merged-chr8-84664104-3	chr8	84663997	84664197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1245.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	138.5	150.92	169.43	132.73	185.32	193.79	93.34	127.99	223.83	222.93	244.21	106.82
Merged-chr19-34520387-3	chr19	34520285	34520485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7089.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	28.67	22.13	44.5	39.82	29.05	47.98	31.56	48.93	58.81	43.68	48.24	38.53
Merged-chr6-136803896-1	chr6	136803796	136803996	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175652)	TTS (NM_175652)	535.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	39.57	44.77	46.78	50.27	42.55	47.98	32.22	40.26	56.06	52.22	54.27	39.47
Merged-chr1-164307560-3	chr1	164307462	164307662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293313)	promoter-TSS (NM_001293313)	-75.0	NM_001357052	66352.0	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	119.93	131.8	136.34	126.29	176.32	175.91	123.24	167.72	224.42	204.86	300.48	120.92
Merged-chr15-61985321-5	chr15	61985199	61985399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-42.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	25.44	26.16	25.67	26.95	29.86	43.9	46.17	34.93	12.0	24.1	9.55	14.41
Merged-chr10-12868776-1	chr10	12868676	12868876	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7041.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	10.9	9.31	8.56	15.28	15.96	13.8	10.96	10.07	13.96	7.53	9.04	5.01
Merged-chr16-91461381-3	chr16	91461283	91461483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-3721.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	33.52	27.92	38.22	69.58	48.68	34.18	37.54	54.14	33.44	31.63	42.71	21.93
Merged-chr7-29232510-3	chr7	29232356	29232556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033525)	promoter-TSS (NM_001033525)	66.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	30.28	17.61	33.09	23.33	29.05	24.77	28.57	19.68	36.78	19.58	30.15	14.72
Merged-chr3-90293037-3	chr3	90292920	90293120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22871.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	183.73	193.43	196.81	164.9	194.73	270.61	172.4	177.95	276.35	301.77	277.37	165.09
Merged-chr12-57282211-1	chr12	57282111	57282311	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51786.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	8.48	5.53	10.84	9.65	7.36	11.29	8.3	13.23	5.9	8.54	7.54	6.89
Merged-chr16-85173204-3	chr16	85173136	85173336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	CpG	471.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	20.19	13.33	10.84	16.49	15.96	18.5	28.57	20.8	16.92	17.07	26.63	12.53
Merged-chr1-131188736-3	chr1	131188640	131188840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	MIR3|SINE|MIR	11445.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	43.61	21.63	44.5	25.74	54.82	51.74	43.18	61.85	46.22	40.17	60.8	29.76
Merged-chr6-24964997-3	chr6	24964857	24965057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	10.5	15.59	7.42	21.32	22.09	15.99	19.27	16.23	15.93	20.59	18.09	14.1
Merged-chr6-83125145-3	chr6	83125051	83125251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023547)	promoter-TSS (NM_023547)	-122.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	25.44	14.84	26.24	21.72	22.91	25.71	18.93	12.56	31.27	29.12	26.63	26.0
Merged-chr4-141182170-3	chr4	141182079	141182279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 4 of 9)	intron (NM_172518, intron 4 of 9)	-31777.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	16.96	12.07	35.94	19.71	49.91	35.75	47.83	40.85	48.19	32.64	52.76	21.62
Merged-chr1-132417463-3	chr1	132417370	132417570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	17.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	117.91	126.77	128.35	145.6	82.64	109.75	84.7	114.81	92.05	79.33	155.27	59.52
Merged-chr3-95985426-3	chr3	95985330	95985530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045872)	promoter-TSS (NR_045872)	-80.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	58.95	52.57	61.04	53.89	50.73	42.96	44.84	55.29	52.52	48.2	64.82	39.47
Merged-chr15-72837133-3	chr15	72837037	72837237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-26813.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	55.32	49.55	43.93	55.5	96.96	77.77	46.5	79.88	84.58	119.5	91.45	53.26
Merged-chr18-80708227-3	chr18	80708147	80708347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-74.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	77.53	76.46	74.16	53.49	86.32	90.94	51.82	69.25	111.33	97.41	103.01	85.21
Merged-chr14-60251498-3	chr14	60251404	60251604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-25.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	178.48	183.87	185.97	157.66	187.78	278.45	150.81	189.62	253.53	238.0	301.99	124.99
Merged-chr1-165621926-3	chr1	165621826	165622026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	12615.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	21.4	13.33	24.53	21.32	22.5	16.31	34.21	3.87	27.54	20.59	34.67	26.0
Merged-chr7-35151046-3	chr7	35150962	35151162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31769.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	69.05	50.81	64.46	57.51	68.73	67.1	64.44	78.87	84.77	77.32	96.98	57.64
Merged-chr2-155627223-1	chr2	155627123	155627323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085378, intron 24 of 41)	intron (NM_001085378, intron 24 of 41)	4343.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	4.44	5.03	2.85	3.22	2.45	12.54	0.66	8.5	8.06	5.02	8.54	7.21
Merged-chr11-5707675-3	chr11	5707560	5707760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026080)	promoter-TSS (NM_026080)	39.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	61.38	56.85	55.9	42.23	54.0	63.97	31.56	45.67	52.12	61.76	80.9	35.71
Merged-chr1-23382764-3	chr1	23382689	23382889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	CpG	386.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	9.69	23.9	15.97	18.9	22.09	18.5	16.61	16.51	12.78	19.58	21.61	22.24
Merged-chr19-45673148-3	chr19	45673064	45673264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12971.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	39.17	36.97	52.48	42.63	27.82	45.78	26.57	48.17	42.09	41.17	32.16	22.56
Merged-chr16-43364307-3	chr16	43364229	43364429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	55867.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	32.71	23.39	47.35	30.97	39.68	25.71	19.27	38.47	32.45	37.16	44.22	17.23
Merged-chr12-38780285-3	chr12	38780180	38780380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007960, exon 1 of 13)	5' UTR (NM_007960, exon 1 of 13)	198.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	65.41	65.9	60.47	41.02	58.91	78.71	44.51	65.36	99.92	96.91	82.91	43.23
Merged-chr4-149407643-3	chr4	149407533	149407733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022022, intron 1 of 26)	B4A|SINE|B4	18998.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	35.94	19.87	34.8	47.06	48.27	31.98	57.8	56.13	22.82	19.08	48.24	18.17
Merged-chr7-80754228-3	chr7	80754115	80754315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49116.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	28.27	23.39	55.33	49.47	65.87	37.0	45.51	74.19	31.27	25.61	46.23	33.52
Merged-chr16-27389002-3	chr16	27388920	27389120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	64.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	46.84	66.4	58.76	57.11	49.09	52.99	55.14	36.42	57.04	73.31	52.26	22.24
Merged-chr11-11808933-3	chr11	11808815	11809015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163359)	promoter-TSS (NM_001163359)	47.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	231.37	255.8	218.48	216.38	189.82	172.47	136.52	200.16	274.77	258.08	256.77	193.29
Merged-chr19-33392168-3	chr19	33392056	33392256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001167818, exon 1 of 7)	5' UTR (NM_001167818, exon 1 of 7)	139.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	47.65	82.5	75.3	69.58	56.05	45.47	75.07	51.39	40.32	36.15	37.69	35.4
Merged-chr18-32352816-3	chr18	32352718	32352918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-24399.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	82.37	59.36	89.56	51.88	66.27	113.51	66.1	74.05	77.89	64.77	97.98	49.18
Merged-chr6-50381773-3	chr6	50381662	50381862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	MER5B|DNA|hAT-Charlie	1075.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	96.51	103.13	119.8	105.78	66.68	116.96	58.46	67.4	122.54	114.98	103.51	62.03
Merged-chr9-35101780-3	chr9	35101686	35101886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-14942.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	78.74	57.1	73.59	50.27	49.09	67.42	45.18	73.09	58.81	51.21	51.25	41.98
Merged-chr17-73942406-3	chr17	73942316	73942516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7780.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	35.13	32.45	71.88	41.43	35.59	25.09	20.93	33.34	30.09	26.61	30.15	37.28
Merged-chr14-103469628-3	chr14	103469549	103469749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43692.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	58.15	54.83	65.6	67.97	108.0	118.22	63.78	86.97	103.26	102.43	106.53	63.28
Merged-chr11-86652881-3	chr11	86652781	86652981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18394.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	32.3	14.34	23.39	17.7	37.64	25.71	12.29	18.9	41.11	38.66	26.13	28.19
Merged-chr6-134922960-3	chr6	134922863	134923063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	2562.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	41.99	33.2	51.34	53.89	49.09	58.95	46.84	58.29	74.15	66.28	115.07	53.57
Merged-chr8-111343379-3	chr8	111343264	111343464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5159.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	52.09	52.57	48.49	40.22	34.77	46.1	16.28	29.22	46.62	44.69	60.8	21.62
Merged-chr15-9131757-3	chr15	9131693	9131893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	8661.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	77.93	90.3	107.25	137.55	99.41	112.57	97.99	124.4	104.05	111.97	131.15	57.33
Merged-chr4-131861105-3	chr4	131861008	131861208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025297, intron 5 of 9)	intron (NM_025297, intron 5 of 9)	-12531.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	14.94	19.62	18.83	10.46	20.05	19.44	13.62	11.47	14.75	14.56	26.13	20.05
Merged-chr13-73804006-3	chr13	73803903	73804103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40306.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	175.65	186.13	223.05	207.13	222.14	228.28	237.83	287.86	247.83	223.94	328.12	151.62
Merged-chr16-20358068-3	chr16	20357966	20358166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32662.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	32.71	26.41	48.49	33.78	49.91	35.75	38.86	64.82	48.19	41.67	46.23	35.71
Merged-chr15-57696203-1	chr15	57696103	57696303	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	1536.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	6.46	8.3	7.99	7.64	7.77	21.95	7.31	8.61	4.72	19.08	8.04	6.58
Merged-chr14-70057453-1	chr14	70057353	70057553	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19992.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	86.01	95.58	101.54	70.38	64.64	114.14	68.43	49.74	97.16	115.99	98.49	51.69
Merged-chr3-108653918-3	chr3	108653824	108654024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145543)	promoter-TSS (NM_145543)	-3.0	NM_001355632	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	70.66	58.61	66.74	50.27	70.77	96.89	42.19	62.66	103.46	96.91	95.97	66.41
Merged-chr9-64811975-1	chr9	64811875	64812075	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	CpG-15087	964.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	12.92	12.83	10.84	6.84	16.77	9.72	19.27	6.36	24.39	21.09	20.1	21.93
Merged-chr5-21131359-3	chr5	21131267	21131467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44912.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	143.35	137.59	164.29	182.6	155.87	174.35	115.26	177.53	147.52	135.57	200.99	109.02
Merged-chr11-60775113-3	chr11	60775016	60775216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2249.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	25.44	19.37	22.25	6.84	59.73	47.66	27.24	21.17	50.94	44.69	31.66	14.72
Merged-chr3-90669051-3	chr3	90669018	90669218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013650)	promoter-TSS (NM_013650)	47.0	NM_013650	20201.0	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	10.09	15.34	9.7	14.88	49.09	36.69	45.51	47.94	18.29	18.58	30.15	25.06
Merged-chr1-138619300-3	chr1	138619190	138619390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	CpG	467.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	73.09	78.23	59.9	78.03	63.82	81.22	60.12	84.03	99.92	85.36	95.97	63.59
Merged-chr17-34301374-1	chr17	34301274	34301474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4493.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	26.25	36.22	28.52	24.94	9.41	22.26	3.65	3.45	7.67	2.01	6.53	2.19
Merged-chr11-79088506-1	chr11	79088406	79088606	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28670.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.86	4.53	9.13	10.46	14.73	7.53	23.25	15.67	14.16	10.54	20.1	14.72
Merged-chr19-5023834-5	chr19	5023703	5023903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007854)	promoter-TSS (NM_007854)	-203.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	34.32	44.27	33.66	35.39	43.77	79.02	35.54	25.35	49.96	32.13	45.22	22.56
Merged-chr10-13983905-3	chr10	13983812	13984012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	17533.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	63.8	49.3	75.3	74.41	96.14	100.97	179.37	150.95	81.23	76.32	114.06	62.65
Merged-chr5-137745927-3	chr5	137745818	137746018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-51.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	53.3	36.47	48.49	30.16	45.41	52.68	25.58	33.93	56.25	52.72	60.8	32.27
Merged-chr17-35200639-3	chr17	35200526	35200726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278601, intron 2 of 2)	intron (NM_001278601, intron 2 of 2)	1381.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	58.55	60.37	28.52	30.57	65.87	89.05	36.21	55.04	88.31	86.86	61.81	41.35
Merged-chr16-91851828-5	chr16	91851756	91851956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79774.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	16.15	22.89	35.37	30.57	26.18	22.26	29.56	26.92	25.77	30.63	25.63	35.09
Merged-chr10-99081737-3	chr10	99081630	99081830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25352.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	102.97	82.75	79.29	47.06	82.23	121.04	73.08	52.26	135.32	128.54	106.53	66.41
Merged-chr1-161035522-1	chr1	161035422	161035622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	606.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	19.38	35.72	9.7	15.28	13.5	39.51	13.95	10.65	18.49	20.08	23.11	15.66
Merged-chr1-39511982-3	chr1	39511871	39512071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER92D|LTR|ERV1	-23730.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	22.21	18.61	15.97	28.15	21.27	38.57	42.19	35.86	26.36	40.17	34.17	19.42
Merged-chr5-130023917-2	chr5	130023810	130024010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133768, intron 2 of 16)	intron (NM_133768, intron 2 of 16)	471.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	22.21	24.4	17.11	11.26	13.5	25.4	11.63	15.59	46.03	28.62	46.23	20.05
Merged-chr3-37639878-3	chr3	37639777	37639977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305442)	promoter-TSS (NM_001305442)	-70.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	52.09	54.58	34.8	38.61	34.36	32.3	20.59	30.0	29.9	31.63	34.17	25.37
Merged-chr9-85326738-3	chr9	85326689	85326889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001160378, exon 2 of 3)	exon (NM_001160378, exon 2 of 3)	335.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	29.88	50.81	24.53	32.58	27.0	50.8	34.21	24.36	54.88	45.69	51.76	31.64
Merged-chr7-25219993-3	chr7	25219901	25220101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-142.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	111.85	98.1	81.0	64.35	129.28	150.2	41.52	82.85	164.63	135.57	118.59	83.64
Merged-chr18-61707671-3	chr18	61707586	61707786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172832)	promoter-TSS (NM_172832)	-51.0	NM_172832	240334.0	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	32.71	29.93	49.06	35.39	33.96	55.82	23.25	58.93	41.5	33.14	55.27	23.49
Merged-chr2-31688208-3	chr2	31688128	31688328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283047)	promoter-TSS (NM_001283047)	241.0	NR_153862	108168742.0	Mm.416860	NR_153862		Gm13427	-	predicted gene 13427	ncRNA	98.93	86.02	101.54	101.35	135.41	131.07	73.08	126.65	123.91	125.53	209.03	67.35
Merged-chr1-36052801-3	chr1	36052718	36052918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15582.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	110.24	90.3	96.41	92.1	108.82	124.8	104.63	143.16	134.14	87.87	146.22	77.69
Merged-chr3-54246625-2	chr3	54246521	54246721	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	90564.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.23	4.02	1.14	8.04	41.32	37.32	48.5	55.15	33.44	31.63	39.7	22.87
Merged-chr14-47395857-2	chr14	47395766	47395966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144553, exon 14 of 19)	exon (NM_144553, exon 14 of 19)	22006.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	16.56	18.61	20.54	24.13	22.5	34.18	36.87	40.18	4.72	0.0	1.0	2.82
Merged-chr2-156863037-3	chr2	156862951	156863151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015591)	promoter-TSS (NR_015591)	-71.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	161.92	150.92	111.81	150.82	157.5	223.26	112.27	127.43	155.38	157.16	195.47	92.1
Merged-chr6-39592666-3	chr6	39592559	39592759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358797)	promoter-TSS (NM_001358797)	94.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	53.7	95.08	77.01	88.89	79.78	100.97	92.68	74.19	67.46	80.84	96.98	50.44
Merged-chr13-97801533-1	chr13	97801433	97801633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	50421.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	14.13	13.08	5.13	4.83	2.45	3.14	1.99	2.69	6.69	4.52	3.52	6.58
Merged-chr8-95081011-3	chr8	95080855	95081055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-246.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	156.67	165.51	164.29	145.19	212.73	248.66	140.18	179.05	287.16	362.52	322.59	195.17
Merged-chr4-147936694-3	chr4	147936589	147936789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011122)	promoter-TSS (NM_011122)	87.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	50.88	48.29	50.77	71.59	31.91	46.72	47.5	43.15	42.48	39.67	44.22	35.71
Merged-chr6-86793632-3	chr6	86793536	86793736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013471)	promoter-TSS (NM_013471)	-52.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	44.42	45.78	28.52	27.75	45.0	53.31	27.9	30.81	54.48	46.19	44.22	37.59
Merged-chr16-33950335-3	chr16	33950252	33950452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16686.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	22.21	24.9	34.23	16.09	25.77	23.83	22.59	34.12	24.19	28.12	28.64	26.31
Merged-chr14-26580112-3	chr14	26580009	26580209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145969, intron 1 of 17)	intron (NM_145969, intron 1 of 17)	559.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	28.27	23.9	19.97	45.05	27.82	37.94	44.84	42.73	36.78	26.11	30.15	24.12
Merged-chr16-31663965-5	chr16	31663867	31664067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252434)	promoter-TSS (NM_001252434)	32.0	NM_001252434	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	18.57	27.17	11.41	16.09	42.14	48.92	43.18	19.32	18.49	21.59	21.1	7.52
Merged-chrX-75875174-3	chrX	75875077	75875277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145629)	promoter-TSS (NM_145629)	5.0	NM_001346519	102866.0	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	21.0	20.63	31.95	19.31	53.59	44.53	35.54	67.99	26.36	31.63	55.27	15.98
Merged-chr8-121108392-3	chr8	121108301	121108501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-22.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	126.39	142.87	107.25	120.26	122.32	197.24	91.01	124.26	220.09	168.21	170.84	118.41
Merged-chr17-40934625-3	chr17	40934520	40934720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-65.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	256.41	242.72	225.33	222.42	234.83	282.84	178.04	285.03	355.22	323.86	376.86	190.47
Merged-chr10-127675317-3	chr10	127675210	127675410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1755.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	8.88	16.1	10.27	4.42	11.45	16.93	8.97	10.57	25.77	29.12	19.09	15.04
Merged-chr10-115384904-3	chr10	115384801	115385001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033261)	promoter-TSS (NM_001033261)	-58.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	236.62	229.65	265.83	269.88	245.87	295.39	267.4	314.02	307.23	285.2	398.97	200.18
Merged-chr12-16881884-3	chr12	16881788	16881988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13090.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	49.26	52.32	50.2	49.47	69.96	104.73	58.13	63.03	70.22	97.41	83.91	40.41
Merged-chrX-140505979-3	chrX	140505844	140506044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36724.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	40.78	23.64	33.09	47.06	101.46	49.23	57.47	61.07	34.03	45.19	84.92	28.19
Merged-chr2-160335252-3	chr2	160335143	160335343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7749.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	30.28	21.13	59.9	32.58	16.77	30.1	20.26	23.47	41.11	21.59	49.75	20.99
Merged-chr10-42680800-3	chr10	42680707	42680907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	1891.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	31.09	48.29	30.23	35.39	25.77	35.43	36.54	30.5	48.78	42.68	53.77	25.37
Merged-chr2-102967632-3	chr2	102967524	102967724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65959.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	34.32	36.97	34.8	34.59	60.14	54.25	32.88	62.22	54.48	52.22	62.31	28.82
Merged-chr12-51829475-3	chr12	51829387	51829587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144788)	promoter-TSS (NM_144788)	49.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	50.88	47.54	53.62	48.67	40.91	79.33	84.04	53.61	57.43	61.76	58.29	38.85
Merged-chr8-84982294-3	chr8	84982201	84982401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3553.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	52.49	52.57	46.78	51.48	69.96	58.95	47.17	68.92	70.22	44.19	75.37	38.53
Merged-chr4-118409294-3	chr4	118409191	118409391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	-28.0	NM_198170	230676.0	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|TIGR	seizure threshold 2	protein-coding	104.18	93.32	92.98	90.9	101.05	127.31	53.81	103.18	127.45	116.99	140.7	84.9
Merged-chr2-92484749-2	chr2	92484644	92484844	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24226.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	2.42	1.26	1.14	0.0	21.68	15.37	22.59	20.72	22.62	21.09	35.68	11.28
Merged-chr9-63124327-3	chr9	63124235	63124435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22645.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	52.09	43.51	52.48	51.48	50.32	66.79	37.87	46.65	65.1	66.78	66.83	46.36
Merged-chr16-91011169-3	chr16	91011079	91011279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028368)	promoter-TSS (NR_028368)	-70.0	NR_028368	67394.0	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	126.79	154.44	127.78	120.66	145.64	188.14	94.34	133.09	190.79	180.76	246.22	111.84
Merged-chr14-57387173-3	chr14	57387075	57387275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	11308.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	17.77	20.37	38.22	14.48	35.59	31.98	22.92	38.92	43.86	42.68	25.63	17.54
Merged-chr17-56764796-3	chr17	56764714	56764914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144858)	promoter-TSS (NM_144858)	63.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	35.13	28.42	37.08	37.0	30.27	36.69	31.89	30.28	39.93	37.16	43.72	36.97
Merged-chr1-128705346-3	chr1	128705260	128705460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113061.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	113.47	118.22	126.64	129.91	153.82	193.16	113.6	145.88	188.43	169.71	219.58	106.2
Merged-chr6-72139698-3	chr6	72139599	72139799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-16502.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	123.56	125.01	198.52	172.54	164.87	145.5	182.69	202.74	129.62	129.04	202.0	87.71
Merged-chr2-140844237-3	chr2	140844139	140844339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-172763.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	37.96	33.45	39.36	28.56	29.05	51.43	32.55	37.46	52.12	39.67	45.22	17.86
Merged-chr1-154008797-3	chr1	154008724	154008924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108895.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	45.23	52.07	27.95	40.22	33.96	42.33	48.83	54.62	34.42	23.1	46.73	25.69
Merged-chr1-86214429-3	chr1	86214328	86214528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	59648.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	72.28	72.19	71.88	87.68	85.09	104.11	83.04	115.12	53.3	46.19	109.54	48.87
Merged-chr11-51763671-3	chr11	51763560	51763760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025535)	promoter-TSS (NM_025535)	-3.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	35.13	21.63	27.38	10.86	29.05	34.49	16.61	22.07	50.94	40.67	45.73	17.54
Merged-chr13-112337319-3	chr13	112337229	112337429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	48811.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	44.01	29.93	43.93	51.48	65.87	65.22	79.72	94.43	42.48	46.7	54.27	30.07
Merged-chr10-52273209-3	chr10	52273098	52273298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025705, intron 2 of 10)	intron (NM_025705, intron 2 of 10)	39579.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	20.19	16.85	14.83	16.89	48.27	38.88	30.56	49.6	16.33	24.1	30.65	19.42
Merged-chr13-43769106-3	chr13	43768996	43769196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-16016.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	61.38	39.74	74.16	47.86	81.82	88.11	86.7	85.18	88.71	71.3	137.68	43.86
Merged-chr12-82448300-3	chr12	82448207	82448407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 22 of 23)	intron (NM_001167983, intron 22 of 23)	136958.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	45.23	45.78	35.37	46.25	26.18	51.11	34.21	47.92	67.66	50.71	91.95	56.39
Merged-chr13-55513458-3	chr13	55513340	55513540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026131)	promoter-TSS (NM_026131)	6.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	24.63	15.34	18.25	15.69	20.05	22.89	16.94	18.93	37.76	39.67	25.63	19.74
Merged-chr4-151862586-3	chr4	151862492	151862692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-824.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	224.51	211.54	235.03	178.17	241.78	256.82	172.4	231.93	304.47	291.22	309.03	168.22
Merged-chr12-79132339-3	chr12	79132248	79132448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	1560.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	122.75	106.14	126.07	83.66	157.5	234.55	130.88	150.7	198.65	233.98	174.86	113.09
Merged-chr3-27258614-3	chr3	27258509	27258709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS-int|LTR|ERV1	-58468.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	65.01	59.61	57.05	53.89	44.18	54.88	31.89	39.65	56.25	41.67	57.28	35.4
Merged-chr10-127288840-3	chr10	127288757	127288957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033072, exon 1 of 13)	5' UTR (NM_033072, exon 1 of 13)	161.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	48.05	48.8	49.63	29.36	57.27	60.83	25.58	35.27	62.94	74.31	61.81	61.09
Merged-chr3-59186593-1	chr3	59186493	59186693	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	8511.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	5.65	2.77	0.0	6.44	4.09	3.14	8.64	6.76	7.87	5.52	3.52	4.39
Merged-chr2-120134922-3	chr2	120134811	120135011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	19664.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	39.17	30.69	67.31	65.16	54.41	44.84	26.91	46.6	51.73	41.67	63.82	46.99
Merged-chr17-17624631-3	chr17	17624523	17624723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-134.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	156.27	124.0	154.02	135.54	181.23	206.96	118.59	185.78	228.16	212.89	265.81	148.49
Merged-chr11-43748037-3	chr11	43747947	43748147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-74.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	126.79	134.82	115.23	152.84	119.05	160.86	95.67	154.12	185.67	207.87	242.2	115.28
Merged-chr1-161517531-3	chr1	161517425	161517625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22868.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	31.9	27.17	37.08	45.85	27.0	35.75	34.21	40.23	29.11	27.62	30.65	15.66
Merged-chr2-167885763-3	chr2	167885664	167885864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	39.98	31.94	56.48	20.11	47.05	52.99	27.9	30.22	42.29	57.74	49.24	15.98
Merged-chr3-133659991-3	chr3	133659902	133660102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115612.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	60.17	42.26	54.19	47.86	41.32	65.54	49.16	59.52	41.11	22.59	78.89	31.01
Merged-chr18-31759837-3	chr18	31759658	31759858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-66.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	40.38	55.34	39.36	34.99	60.55	74.0	59.79	63.62	49.57	66.78	83.91	55.13
Merged-chr4-70535048-3	chr4	70534948	70535148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-120.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	173.63	175.31	183.69	267.06	211.1	236.43	202.62	316.66	284.8	271.14	474.34	176.37
Merged-chr2-167493066-3	chr2	167492943	167493143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170756)	promoter-TSS (NM_170756)	-169.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	80.36	106.9	58.19	79.64	82.64	113.83	52.15	63.28	123.91	126.53	119.09	70.17
Merged-chr8-71488633-3	chr8	71488536	71488736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_032544, exon 1 of 9)	5' UTR (NM_032544, exon 1 of 9)	533.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	39.98	35.47	34.8	58.72	51.14	69.61	25.24	49.4	57.83	50.21	58.79	32.89
Merged-chr1-35860947-3	chr1	35860838	35861038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-207462.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	61.78	43.77	63.89	55.1	31.09	41.08	30.23	55.74	63.73	39.67	48.24	48.87
Merged-chr4-105204384-3	chr4	105204290	105204490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 2 of 5)	MIRc|SINE|MIR	47043.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	22.21	15.34	46.78	48.26	15.55	20.07	31.22	36.31	31.08	20.08	41.2	29.13
Merged-chr7-114066909-3	chr7	114066759	114066959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	50922.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	35.94	40.24	36.51	47.06	32.32	50.49	48.83	41.52	68.05	64.27	89.94	31.64
Merged-chr4-56831301-1	chr4	56831201	56831401	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018761, intron 8 of 18)	intron (NM_018761, intron 8 of 18)	-28970.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	6.86	3.02	3.42	6.44	2.45	2.51	10.3	9.31	5.11	7.53	3.52	4.39
Merged-chr6-57774001-3	chr6	57773914	57774114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51111.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	77.93	46.28	96.41	86.07	90.41	66.79	60.12	78.08	90.08	68.79	97.48	73.93
Merged-chr4-43046214-3	chr4	43046111	43046311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	9.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	52.49	56.59	39.36	34.99	77.73	76.2	42.52	51.81	60.97	60.25	74.37	39.78
Merged-chr8-20550553-1	chr8	20550453	20550653	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-64374.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	4.44	6.79	2.28	2.01	5.32	7.21	3.32	1.65	16.92	22.59	20.1	10.96
Merged-chr8-127815004-3	chr8	127814926	127815126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	463199.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	75.11	60.62	46.21	71.99	78.55	68.67	51.49	80.89	74.15	78.33	106.53	57.01
Merged-chr14-36968793-3	chr14	36968695	36968895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-31.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	183.73	156.7	173.42	180.19	278.6	271.55	171.73	267.87	297.2	258.58	382.89	176.68
Merged-chr5-136084998-3	chr5	136084908	136085108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1092.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	58.95	67.41	77.01	47.06	46.23	65.54	32.55	50.24	59.6	65.78	59.8	47.3
Merged-chr5-99250485-2	chr5	99250390	99250590	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2437.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	11.31	6.54	10.27	11.26	11.45	23.2	14.28	9.56	11.41	20.08	22.61	20.68
Merged-chr4-44167953-3	chr4	44167827	44168027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	29.0	NM_001355181	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	54.11	35.72	32.52	35.8	56.87	49.86	30.89	44.8	49.96	58.75	64.82	34.46
Merged-chr1-170573521-2	chr1	170573427	170573627	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	16322.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	2.52	1.14	1.61	25.77	27.91	20.59	22.12	19.67	26.11	21.61	16.92
Merged-chr19-34583412-3	chr19	34583298	34583498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-131.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	15.75	27.17	17.11	14.08	22.5	18.5	16.28	6.9	23.21	21.59	21.61	15.35
Merged-chrUn_GL456392-22755-1	chrUn_GL456392	22655	22855	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	31.67	51.21	32.16	36.65
Merged-chr17-46202703-3	chr17	46202626	46202826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030715)	promoter-TSS (NM_030715)	-101.0	NM_030715	80905.0	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	81.57	67.16	86.14	60.73	92.05	111.63	52.48	69.84	103.85	124.02	121.1	79.57
Merged-chr17-31057964-7	chr17	31057884	31058084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 1 of 14)	CpG	290.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	13.33	14.84	13.12	26.14	24.55	35.43	29.23	21.56	20.65	20.08	36.68	23.49
Merged-chr2-129306193-3	chr2	129306088	129306288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040371, exon 4 of 5)	non-coding (NR_040371, exon 4 of 5)	3784.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	41.99	28.42	54.76	72.8	59.73	50.17	77.73	84.53	61.17	32.64	80.9	41.98
Merged-chr9-16312865-3	chr9	16312764	16312964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65367.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	17.77	20.63	26.81	39.01	40.5	37.0	21.92	57.25	30.09	37.66	47.74	22.56
Merged-chr6-29246776-3	chr6	29246654	29246854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25734.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	33.92	24.4	62.18	32.58	39.27	40.76	45.18	62.44	54.09	50.21	59.29	26.63
Merged-chr7-19271966-5	chr7	19271847	19272047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	-93.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	77.93	85.52	71.31	61.94	55.64	122.61	33.88	39.28	97.75	94.9	108.03	53.88
Merged-chr7-35057262-3	chr7	35057168	35057368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-702.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	47.65	31.19	31.95	57.92	62.59	52.37	30.56	55.91	56.45	41.67	59.8	46.36
Merged-chr1-185204051-3	chr1	185203946	185204146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-122.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	134.46	112.43	149.46	146.0	145.64	164.0	121.91	137.97	185.87	198.83	235.66	111.52
Merged-chr13-41606486-3	chr13	41606377	41606577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	CpG	261.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	26.25	16.35	56.48	14.88	28.64	28.85	15.28	26.55	38.75	26.61	32.66	20.36
Merged-chr15-59743068-3	chr15	59742963	59743163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51896.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	46.44	48.54	43.35	47.46	25.77	74.32	30.56	45.42	65.1	69.29	69.34	49.18
Merged-chr10-118709117-1	chr10	118709017	118709217	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-152592.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.65	2.01	4.56	3.22	2.45	2.2	9.97	7.63	6.1	1.51	9.55	4.07
Merged-chr15-66561073-3	chr15	66560967	66561167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172514)	promoter-TSS (NM_172514)	-21.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	25.04	31.69	46.21	36.6	38.05	53.93	44.84	47.05	58.22	51.72	56.78	36.97
Merged-chr11-111290768-3	chr11	111290672	111290872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	224608.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	61.38	60.87	55.9	60.33	69.96	84.66	45.18	60.34	79.07	93.39	81.9	55.76
Merged-chr16-22108340-3	chr16	22108267	22108467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	54932.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	23.82	23.9	31.95	26.14	25.36	52.68	23.92	19.96	46.03	35.65	43.21	28.19
Merged-chr8-78509305-3	chr8	78509214	78509414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	-14.0	NM_001282109	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	15.34	7.04	15.4	8.04	11.05	17.56	12.95	19.09	20.65	29.62	29.14	15.35
Merged-chrX-163909002-3	chrX	163908927	163909127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026887)	promoter-TSS (NM_026887)	10.0	NM_001290379	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	208.76	176.07	202.51	240.11	214.37	249.29	209.6	280.18	249.6	286.2	344.7	171.36
Merged-chr13-24801304-4	chr13	24801239	24801439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-318.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	76.32	107.91	83.29	98.94	48.68	84.66	66.43	64.93	108.38	133.06	101.5	73.62
Merged-chr16-95931715-3	chr16	95931613	95931813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2636.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	112.26	74.45	145.47	159.67	127.64	127.94	109.28	125.75	112.51	96.91	141.7	80.2
Merged-chr4-134548286-3	chr4	134548187	134548387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029100, intron 2 of 11)	MIRc|SINE|MIR	3879.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	50.88	45.02	46.78	40.22	86.73	107.56	65.44	74.97	93.23	140.09	120.09	99.62
Merged-chr15-88862440-2	chr15	88862321	88862521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	227.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	85.2	80.49	61.04	71.59	82.23	123.86	57.13	78.62	146.53	146.11	117.58	78.94
Merged-chr10-41303224-3	chr10	41303140	41303340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	1.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	59.36	49.8	45.07	34.99	69.55	85.61	43.51	52.32	71.59	90.88	88.94	50.12
Merged-chr8-72475213-3	chr8	72475107	72475307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	26.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	144.56	168.27	184.26	154.04	128.46	179.99	113.27	129.7	230.72	253.56	233.65	129.69
Merged-chr17-25016404-3	chr17	25016287	25016487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	301.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	17.77	18.11	11.41	17.29	23.73	35.43	16.28	27.22	28.91	38.66	53.26	24.43
Merged-chr12-80231627-3	chr12	80231557	80231757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	28714.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	56.13	45.02	74.16	82.45	51.55	41.39	29.9	44.27	33.44	23.6	51.76	22.56
Merged-chr6-39781890-3	chr6	39781791	39781991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29045.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	44.82	31.69	52.48	44.64	58.91	64.6	55.8	79.43	79.86	71.3	68.34	41.98
Merged-chr19-32637475-3	chr19	32637380	32637580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360403, intron 3 of 11)	intron (NM_001360403, intron 3 of 11)	17475.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	44.42	54.83	71.88	75.61	63.82	49.86	54.81	72.84	67.86	50.21	77.38	32.58
Merged-chr7-80647551-3	chr7	80647468	80647668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	11551.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	29.07	56.59	71.88	82.85	61.77	37.63	48.16	63.84	56.45	61.76	80.4	46.68
Merged-chr14-40924545-2	chr14	40924440	40924640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	MIR3|SINE|MIR	23669.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.44	9.06	4.56	13.27	12.27	11.6	12.29	22.99	6.1	3.01	7.54	5.01
Merged-chr7-140116486-3	chr7	140116387	140116587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053119)	promoter-TSS (NM_053119)	-64.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	81.16	82.75	108.39	65.96	85.91	77.77	59.46	91.85	117.82	85.36	112.56	59.21
Merged-chr15-79659075-3	chr15	79658964	79659164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-108.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	33.92	41.5	34.8	32.98	35.18	42.33	39.2	23.75	38.94	61.26	47.23	43.23
Merged-chr9-116376213-3	chr9	116376112	116376312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187032.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	50.88	61.12	54.19	59.12	73.23	76.51	51.49	90.95	75.92	51.72	88.94	30.07
Merged-chr1-135266093-3	chr1	135265993	135266193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 7 of 9)	intron (NM_001159624, intron 7 of 9)	-7621.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	64.2	41.75	59.9	47.46	63.82	90.0	64.77	70.04	57.43	70.8	77.38	36.34
Merged-chr11-68474723-3	chr11	68474625	68474825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-28294.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	56.13	55.59	51.91	40.22	67.09	91.25	37.2	33.0	63.53	67.78	67.84	21.62
Merged-chr13-38960519-3	chr13	38960413	38960613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134060)	promoter-TSS (NM_134060)	24.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	35.53	26.41	44.5	56.71	44.59	35.43	28.23	71.66	55.07	49.71	66.33	36.65
Merged-chr10-128493899-3	chr10	128493811	128494011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-25.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	57.34	58.61	63.89	66.77	57.27	73.69	31.56	53.19	85.17	87.37	118.08	52.0
Merged-chr5-151333291-3	chr5	151333199	151333399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35376.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	51.69	50.56	51.34	75.61	63.0	66.16	60.12	81.76	114.87	103.94	86.43	65.47
Merged-chr9-22313449-3	chr9	22313358	22313558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5820.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	97.31	88.03	124.93	123.48	83.05	135.78	84.7	120.65	129.42	80.84	137.18	73.62
Merged-chr8-11635816-3	chr8	11635716	11635916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-59.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	80.36	60.62	51.91	71.59	113.73	90.94	64.11	99.98	104.05	112.47	165.82	57.01
Merged-chr8-11341363-3	chr8	11341264	11341464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-28538.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	71.47	38.74	60.47	74.41	63.82	65.85	45.84	73.82	71.0	71.8	82.91	46.36
Merged-chr11-69410832-3	chr11	69410711	69410911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	2864.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	80.36	84.76	70.74	56.31	63.82	124.49	42.85	49.88	107.98	85.86	129.64	63.28
Merged-chr1-136127097-3	chr1	136127005	136127205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_046167)	TTS (NR_046167)	4078.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	12.52	26.66	29.66	25.34	29.46	30.1	21.26	36.95	39.34	46.7	46.23	26.94
Merged-chr5-114699170-3	chr5	114699056	114699256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	-8221.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	122.35	110.67	122.65	134.74	124.78	131.07	92.34	132.37	152.43	162.68	194.46	106.82
Merged-chr7-127769847-3	chr7	127769754	127769954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	39.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	51.28	33.96	29.09	36.6	55.23	56.44	38.2	37.21	57.43	40.17	53.77	38.85
Merged-chr4-134097408-3	chr4	134097316	134097516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2343.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	69.45	43.77	75.3	38.61	51.55	66.79	36.21	40.21	86.35	89.88	88.44	50.12
Merged-chr16-24625728-3	chr16	24625607	24625807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-96148.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	100.55	101.37	84.43	73.6	91.23	117.9	58.46	71.97	93.03	78.33	74.37	53.57
Merged-chr1-192759636-2	chr1	192759527	192759727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	11592.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	26.65	21.63	34.23	22.12	0.82	0.0	2.33	1.49	22.03	14.56	22.61	16.29
Merged-chr11-103443960-3	chr11	103443853	103444053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-31289.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	39.57	34.46	28.52	21.72	46.23	61.46	23.58	22.51	64.91	70.8	47.74	32.58
Merged-chr7-43343353-3	chr7	43343256	43343456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7985.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	22.21	16.6	17.68	24.53	33.14	26.03	21.59	33.93	21.44	28.62	36.18	15.04
Merged-chr11-115641369-3	chr11	115641243	115641443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13048.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	194.63	144.88	165.43	107.79	194.73	253.37	118.25	143.36	224.62	245.03	225.61	124.99
Merged-chr17-12783418-3	chr17	12783314	12783514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-13708.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	39.98	56.85	42.78	58.72	49.91	79.96	49.16	61.4	81.43	80.84	108.54	61.4
Merged-chr17-25785445-3	chr17	25785330	25785530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	-92.0	NM_026897	68977.0	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	33.92	27.17	27.95	34.59	37.64	35.43	38.2	28.74	34.22	54.23	32.16	28.82
Merged-chr18-54902726-3	chr18	54902617	54902817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87463.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	40.78	23.64	35.37	32.98	32.73	23.83	27.24	55.26	43.66	44.69	57.28	32.58
Merged-chr2-146010916-3	chr2	146010831	146011031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76147.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	34.32	23.39	53.62	61.13	49.09	41.08	52.48	55.35	49.37	40.17	74.37	35.09
Merged-chr13-59822721-3	chr13	59822626	59822826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 1 of 27)	CpG	421.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	97.72	92.31	95.84	83.26	80.59	127.0	69.76	81.65	105.03	122.51	133.66	82.08
Merged-chr15-25282509-3	chr15	25282413	25282613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131251.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	48.05	48.8	27.95	37.81	51.14	55.82	77.06	79.09	76.12	60.75	87.93	56.07
Merged-chr2-120027516-3	chr2	120027409	120027609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114637)	promoter-TSS (NM_001114637)	26.0	NM_001114637	433466.0	Mm.482417	NM_001114637	ENSMUSG00000098789	Jmjd7	-	jumonji domain containing 7	protein-coding	53.3	46.03	61.04	52.29	57.68	63.03	49.49	64.01	65.69	76.82	81.9	31.33
Merged-chr5-88770466-3	chr5	88770347	88770547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007832, intron 2 of 6)	intron (NM_007832, intron 2 of 6)	5434.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	31.5	32.7	31.38	29.36	35.59	29.79	18.6	39.14	47.8	46.7	46.23	23.81
Merged-chr16-17759642-3	chr16	17759542	17759742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	21.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	27.86	23.9	32.52	37.81	28.64	29.16	13.95	27.7	33.83	35.65	46.73	32.58
Merged-chr2-128698299-3	chr2	128698187	128698387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-628.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	46.03	27.17	49.63	34.19	44.18	49.54	19.93	38.86	49.57	52.22	54.27	38.85
Merged-chr6-56797756-3	chr6	56797654	56797854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	59.0	NM_001362210	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	115.49	127.02	91.84	103.77	124.78	172.15	107.62	121.4	177.22	169.71	177.88	86.15
Merged-chr1-173430539-3	chr1	173430450	173430650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	ORR1F|LTR|ERVL-MaLR	9946.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	56.94	79.48	83.86	58.32	78.55	61.77	40.19	69.45	103.06	91.38	89.94	47.3
Merged-chr6-140619927-3	chr6	140619805	140620005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2758.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	31.5	35.72	14.83	33.78	33.14	33.55	34.55	40.65	45.04	32.64	56.28	37.28
Merged-chr14-31386253-3	chr14	31386144	31386344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	31433.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	58.55	49.55	106.1	89.69	105.14	90.0	134.53	133.46	107.2	95.4	130.14	116.22
Merged-chr10-23851440-1	chr10	23851340	23851540	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011979)	promoter-TSS (NM_011979)	-22.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	2.01	8.56	1.61	0.82	0.94	3.99	5.8	23.41	6.03	40.2	12.22
Merged-chr8-126422461-3	chr8	126422376	126422576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-25.0	NM_174987	67892.0	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	126.39	102.37	106.1	92.91	108.41	146.44	68.76	102.28	154.79	156.15	139.69	100.25
Merged-chr3-52047185-3	chr3	52047069	52047269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57837.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	121.54	122.75	153.45	143.59	145.64	173.41	144.16	210.25	194.52	175.23	235.66	127.19
Merged-chr12-55302679-3	chr12	55302599	55302799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	62.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	50.07	42.01	45.07	40.62	60.55	56.76	47.83	54.42	43.27	50.21	72.36	25.69
Merged-chr11-79871005-1	chr11	79870905	79871105	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91382.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	14.13	12.58	11.98	8.85	18.82	18.81	2.99	18.08	29.9	26.11	23.62	22.56
Merged-chr9-21313421-3	chr9	21313316	21313516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1083.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	33.11	49.55	27.95	36.6	43.77	69.61	25.58	33.67	53.11	43.68	54.27	30.07
Merged-chr5-64970076-3	chr5	64969987	64970187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026667)	promoter-TSS (NM_026667)	12.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	29.07	26.41	33.66	28.15	31.5	47.35	27.24	31.93	45.83	35.65	54.77	34.15
Merged-chr11-115690528-3	chr11	115690430	115690630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	9004.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	15.75	12.32	18.83	6.03	21.27	28.85	11.29	10.77	30.49	22.59	18.59	14.72
Merged-chr13-95845204-3	chr13	95845162	95845362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	PB1D10|SINE|Alu	46660.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	15.34	12.83	18.83	10.46	26.59	39.51	13.62	25.37	33.44	36.65	44.22	29.76
Merged-chr15-58211566-3	chr15	58211478	58211678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	3314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	43.21	27.92	45.07	47.06	38.05	38.26	54.48	78.03	41.5	43.68	55.27	41.98
Merged-chr1-165681553-3	chr1	165681414	165681614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	26580.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	69.86	47.04	72.45	63.55	49.91	69.93	46.5	51.06	44.45	54.23	36.18	27.25
Merged-chr3-108017539-3	chr3	108017441	108017641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010358, intron 1 of 7)	intron (NM_010358, intron 1 of 7)	432.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	35.13	30.18	25.67	40.22	47.05	50.49	23.92	33.98	37.17	55.23	64.82	17.86
Merged-chr3-130730367-3	chr3	130730277	130730477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	21.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	140.12	105.14	140.33	153.64	168.96	174.97	107.62	135.31	238.58	217.91	291.94	160.08
Merged-chr19-57452932-3	chr19	57452831	57453031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028115)	promoter-TSS (NM_028115)	25.0	NM_028115	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	24.23	17.36	34.23	34.99	47.87	44.53	31.56	43.74	29.31	41.17	51.76	27.57
Merged-chr8-122567703-3	chr8	122567622	122567822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026014)	promoter-TSS (NM_026014)	-293.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	102.56	120.98	123.22	98.14	97.37	136.4	112.61	105.87	134.93	162.18	123.11	82.7
Merged-chr7-19321609-3	chr7	19321496	19321696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-11551.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	165.15	183.62	192.24	225.23	179.19	227.97	164.42	161.33	272.22	271.14	298.98	171.36
Merged-chr6-116004909-3	chr6	116004815	116005015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9910.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	28.67	28.93	25.67	30.16	34.77	45.47	22.92	41.75	32.06	43.68	47.74	18.48
Merged-chr7-128611201-3	chr7	128611113	128611313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-152.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	184.53	189.15	214.49	214.77	224.19	285.04	152.47	186.59	249.01	236.99	270.84	128.75
Merged-chr4-105718745-3	chr4	105718646	105718846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-522467.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	21.4	18.61	32.52	28.15	27.0	20.38	36.87	50.83	27.14	27.62	45.73	22.56
Merged-chr13-95888845-3	chr13	95888727	95888927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	3095.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	17.36	20.12	21.11	18.9	33.96	34.81	17.61	24.67	31.08	32.64	36.68	20.68
Merged-chr7-25719061-3	chr7	25718932	25719132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	21.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	25.04	30.94	23.96	24.53	30.27	22.26	12.95	19.93	25.96	25.11	18.09	28.19
Merged-chr3-38187666-3	chr3	38187576	38187776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20443.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	28.27	28.67	31.95	50.27	21.68	28.22	46.84	55.12	54.09	66.28	69.34	46.05
Merged-chr2-170330013-3	chr2	170329917	170330117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26344.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	63.4	30.69	48.49	49.87	53.59	48.29	47.5	57.81	46.81	45.69	71.86	36.65
Merged-chr8-57531162-3	chr8	57531080	57531280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 11 of 11)	intron (NM_001167981, intron 11 of 11)	19337.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	18.98	19.62	30.23	38.61	25.36	31.04	25.91	31.71	50.75	41.67	45.73	28.51
Merged-chr16-30776456-3	chr16	30776358	30776558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176735.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	18.17	4.53	19.97	40.22	27.0	18.5	49.49	46.21	28.72	9.04	55.78	21.3
Merged-chrX-36745030-3	chrX	36744924	36745124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 1 of 3)	intron (NR_075097, intron 1 of 3)	1392.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	53.3	38.99	45.64	67.17	48.27	65.22	32.88	69.45	63.14	46.19	74.87	44.17
Merged-chr16-55757723-2	chr16	55757625	55757825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	64413.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	33.11	28.42	33.66	39.01	46.64	29.79	29.56	14.61	43.07	58.24	53.26	32.58
Merged-chr2-33131020-4	chr2	33130902	33131102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	-383.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	107.41	122.24	99.83	103.37	112.09	140.79	94.34	76.54	173.87	186.28	166.32	104.32
Merged-chr1-36272282-1	chr1	36272182	36272382	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1143.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	10.9	8.8	7.99	8.04	4.91	13.48	10.3	8.07	6.69	14.06	15.58	10.34
Merged-chr4-8842505-3	chr4	8842412	8842612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	91188.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	50.07	58.86	56.48	50.27	37.64	52.99	28.23	40.15	92.05	83.35	91.45	48.56
Merged-chr19-60861442-3	chr19	60861341	60861541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362384)	promoter-TSS (NM_001362384)	-13.0	NM_053198	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	70.26	71.94	81.0	83.26	88.37	84.35	66.1	117.0	93.23	84.35	149.24	78.63
Merged-chr1-159187025-3	chr1	159186928	159187128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45172.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	42.8	51.06	99.26	76.02	126.0	117.59	138.52	132.98	92.84	87.87	144.21	68.92
Merged-chr4-53149061-3	chr4	53148963	53149163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	10832.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	20.59	27.17	34.8	31.37	37.64	38.57	49.83	37.54	51.34	39.67	57.79	50.12
Merged-chr5-65537150-3	chr5	65537031	65537231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310618)	promoter-TSS (NM_001310618)	-114.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	90.85	94.83	67.31	72.8	96.14	106.3	64.77	96.76	123.52	119.0	132.66	74.56
Merged-chr2-90576438-3	chr2	90576326	90576526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4221.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	13.33	16.6	29.09	21.72	37.23	37.63	39.2	40.88	32.26	31.13	31.15	15.66
Merged-chr3-96278186-3	chr3	96278095	96278295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8495.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	32.71	25.91	35.37	31.77	40.5	42.65	25.24	34.35	32.06	43.18	59.29	20.05
Merged-chr16-85122127-3	chr16	85122006	85122206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	51601.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	29.88	11.07	27.38	36.2	30.68	32.93	24.91	49.49	24.78	32.13	38.69	16.6
Merged-chr18-82902748-3	chr18	82902668	82902868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8111.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	48.46	29.43	35.37	18.5	43.77	51.11	28.57	37.57	44.45	49.71	61.81	34.15
Merged-chr2-109280722-3	chr2	109280626	109280826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-12.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	160.31	139.6	116.94	145.6	132.96	153.65	113.93	177.98	204.95	178.25	233.15	114.66
Merged-chr19-47432614-3	chr19	47432513	47432713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31798.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	176.05	152.93	152.31	142.78	150.55	181.25	127.89	199.99	147.32	143.1	201.5	104.63
Merged-chr12-85598229-3	chr12	85598126	85598326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205052)	promoter-TSS (NM_001205052)	-879.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	51.28	39.74	57.62	58.32	70.77	71.81	48.83	77.47	87.72	52.22	73.36	44.48
Merged-chr17-47221482-5	chr17	47221383	47221583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-8747.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	37.55	36.72	45.07	41.02	33.96	40.14	53.48	25.37	49.96	46.19	46.73	38.53
Merged-chr11-85374929-1	chr11	85374829	85375029	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 6 of 25)	intron (NM_138681, intron 6 of 25)	21765.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	7.27	6.29	9.13	5.63	5.32	10.98	3.65	13.23	4.33	2.01	2.01	0.0
Merged-chr7-96477421-3	chr7	96477318	96477518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-135454.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	81.16	71.69	111.81	123.88	81.0	70.55	84.04	122.16	43.27	61.76	73.36	65.16
Merged-chr19-47067666-3	chr19	47067547	47067747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177342)	promoter-TSS (NM_177342)	-101.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	39.98	43.26	35.37	32.98	49.91	39.51	30.89	27.73	43.47	70.8	28.14	26.94
Merged-chr1-43811171-3	chr1	43811065	43811265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16543.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	39.98	25.15	54.76	39.42	59.32	63.66	35.54	82.37	46.22	46.7	51.76	34.77
Merged-chr15-78913835-3	chr15	78913720	78913920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020271)	promoter-TSS (NM_020271)	-99.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	61.38	61.37	57.62	39.82	65.46	79.02	44.18	53.78	85.76	60.75	78.39	37.59
Merged-chr3-89459147-3	chr3	89459051	89459251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026784)	promoter-TSS (NM_026784)	33.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	33.92	43.51	45.07	35.8	66.68	42.96	21.59	36.53	56.25	44.19	35.68	25.37
Merged-chr8-14675676-3	chr8	14675571	14675771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-212865.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	73.49	55.34	95.84	93.31	125.19	108.5	132.87	145.82	111.33	95.9	161.8	67.04
Merged-chr2-19579374-1	chr2	19579274	19579474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25464.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	41.19	43.51	82.15	61.94	0.0	0.0	0.0	0.0	1.57	0.0	1.51	1.88
Merged-chr12-32890642-3	chr12	32890531	32890731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63158.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	50.88	51.31	65.03	60.73	68.32	75.88	61.45	95.97	60.58	57.24	88.44	61.71
Merged-chr10-79854441-3	chr10	79854347	79854547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	15.0	NM_001283013	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	191.8	206.0	225.9	181.39	245.05	262.15	194.32	200.22	291.69	324.86	306.51	167.91
Merged-chr1-10233074-3	chr1	10232979	10233179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102430)	promoter-TSS (NM_001102430)	-409.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	76.32	85.77	95.27	93.31	98.18	97.52	86.7	115.43	100.7	80.84	116.58	49.5
Merged-chr3-88685750-3	chr3	88685642	88685842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-45.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	62.99	80.74	82.72	69.18	58.09	95.95	57.47	66.95	104.44	108.45	142.2	73.93
Merged-chr1-86394481-3	chr1	86394393	86394593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5132.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	33.52	25.15	54.19	34.99	49.5	43.9	42.19	51.73	44.25	26.11	47.23	30.39
Merged-chr11-48853790-5	chr11	48853535	48853735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Thr-ACA|tRNA|tRNA	16164.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	21.4	12.32	14.26	27.75	16.77	19.76	18.6	17.92	32.26	25.61	21.1	19.74
Merged-chr4-3744330-3	chr4	3744234	3744434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	29370.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	136.89	107.4	147.18	129.91	97.78	157.1	77.73	73.99	118.6	150.63	113.06	65.47
Merged-chr18-67389404-3	chr18	67389333	67389533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1298.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	44.42	55.34	43.35	33.38	45.82	52.05	22.92	29.13	44.25	39.67	43.72	31.95
Merged-chr2-6323282-3	chr2	6323190	6323390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	CpG	533.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	17.36	14.84	24.53	13.67	13.09	17.56	12.29	19.29	20.26	30.13	29.14	13.47
Merged-chr2-160171292-3	chr2	160171178	160171378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154625.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	62.18	48.8	79.86	75.21	59.32	56.44	78.72	73.93	57.04	41.17	99.49	46.68
Merged-chr6-24664260-3	chr6	24664181	24664381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	714.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	40.78	45.28	34.8	41.43	44.59	55.82	57.8	44.94	61.96	60.25	56.78	28.51
Merged-chr16-5011410-3	chr16	5011322	5011522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133185, intron 5 of 10)	intron (NM_133185, intron 5 of 10)	2131.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	19.38	22.64	21.68	14.48	28.23	23.52	23.58	17.78	29.5	19.58	20.1	12.22
Merged-chr11-21048883-3	chr11	21048774	21048974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42450.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	24.63	26.91	26.81	12.87	26.18	50.8	13.95	29.33	46.81	38.66	27.64	23.18
Merged-chr8-72008542-3	chr8	72008445	72008645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	1081.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	59.36	55.34	54.76	82.05	76.09	80.27	70.75	86.66	86.94	74.81	107.53	57.01
Merged-chr14-67275526-3	chr14	67275436	67275636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	39175.0	NM_001037931	628416.0	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	48.05	43.51	47.92	52.69	74.87	116.34	86.7	119.58	95.2	96.91	132.15	80.82
Merged-chr9-3029760-3	chr9	3029660	3029860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	8983.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	61.38	61.12	66.74	50.27	77.32	49.54	138.18	3.64	55.47	54.73	69.34	101.19
Merged-chr1-193130246-3	chr1	193130150	193130350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	1.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	94.89	71.43	74.16	64.35	76.5	82.16	72.75	68.08	85.95	92.89	107.53	77.38
Merged-chr17-28294609-3	chr17	28294504	28294704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-18926.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	37.96	22.13	45.07	38.21	57.68	38.57	22.59	49.35	47.4	33.14	45.22	35.09
Merged-chr2-163419633-3	chr2	163419519	163419719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025699)	promoter-TSS (NM_025699)	-149.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	263.68	210.53	231.61	198.28	277.78	320.16	202.96	214.21	312.73	312.31	341.19	203.94
Merged-chr10-95940634-3	chr10	95940514	95940714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-49.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	160.31	170.79	176.84	147.21	144.0	207.27	139.51	197.41	213.21	221.93	334.65	130.01
Merged-chr14-20655023-4	chr14	20654945	20655145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021508, intron 2 of 5)	intron (NM_021508, intron 2 of 5)	1495.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	13.33	11.07	10.27	18.1	22.09	31.36	25.58	16.26	36.58	61.26	52.26	28.51
Merged-chr2-137881196-3	chr2	137881103	137881303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-375381.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	30.69	18.86	40.5	56.71	34.36	31.04	40.19	45.98	26.16	29.62	53.77	24.12
Merged-chr5-137076309-3	chr5	137076210	137076410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4038.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	70.66	48.29	96.98	65.56	92.46	85.29	66.1	90.08	67.86	100.92	120.6	53.88
Merged-chr1-181257811-3	chr1	181257709	181257909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45831.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	31.9	24.15	37.08	24.13	26.18	42.02	26.24	32.44	35.01	31.13	29.65	14.1
Merged-chr19-56713872-3	chr19	56713755	56713955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8517.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	50.07	46.03	40.5	66.36	65.05	113.51	87.03	64.91	85.36	105.94	120.09	40.1
Merged-chr9-65908953-3	chr9	65908873	65909073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	-37.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	83.99	51.06	71.88	70.79	88.37	102.54	63.44	67.51	92.64	98.91	87.43	56.7
Merged-chr6-17629253-3	chr6	17629144	17629344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7766.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	47.65	39.99	53.62	43.84	79.78	84.35	41.52	53.97	75.53	58.24	92.96	45.11
Merged-chr11-85774891-3	chr11	85774801	85775001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046194, intron 1 of 2)	intron (NR_046194, intron 1 of 2)	779.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	34.73	33.7	43.35	37.81	43.36	56.13	18.93	45.39	47.4	33.14	37.18	20.99
Merged-chr6-125411231-3	chr6	125411119	125411319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30715.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	30.28	31.69	39.36	21.32	39.27	45.47	27.9	54.76	39.34	39.16	61.3	27.88
Merged-chr14-73442153-3	chr14	73442057	73442257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56868.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	147.39	131.55	176.84	168.52	142.37	185.32	142.5	179.52	170.14	135.57	242.7	119.98
Merged-chr17-80224545-3	chr17	80224470	80224670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355458, exon 1 of 3)	5' UTR (NM_001355458, exon 1 of 3)	119.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	43.61	41.0	21.68	35.8	25.36	41.39	43.85	33.2	36.98	30.13	34.17	33.83
Merged-chr7-19816433-3	chr7	19816289	19816489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	6366.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	108.62	91.56	117.51	84.46	137.87	151.46	101.64	109.21	157.15	147.62	181.9	87.71
Merged-chr8-123443049-3	chr8	123442961	123443161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281803)	promoter-TSS (NM_001281803)	105.0	NM_054046	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	44.01	40.24	36.51	36.2	46.64	34.18	51.49	33.98	26.16	37.16	25.12	33.83
Merged-chr6-72165048-3	chr6	72164964	72165164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41867.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	29.07	25.66	34.23	27.35	27.82	18.5	15.28	36.62	36.78	45.69	50.75	30.7
Merged-chr9-7337303-3	chr9	7337188	7337388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7109.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	21.0	14.59	51.91	25.34	44.18	36.37	26.24	52.49	36.58	29.62	32.16	23.49
Merged-chr2-101827330-1	chr2	101827230	101827430	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11650.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.46	1.51	4.56	12.07	4.5	10.66	0.66	11.24	5.31	6.53	4.02	4.7
Merged-chr18-76152760-1	chr18	76152660	76152860	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17792.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.81	1.76	5.13	2.41	0.0	2.51	0.0	0.84	34.81	34.14	33.16	16.29
Merged-chr16-91548158-3	chr16	91548054	91548254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	1060.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	36.75	22.64	39.36	42.63	38.86	39.82	39.53	53.44	48.98	48.2	57.79	31.01
Merged-chr12-4843370-3	chr12	4843286	4843486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173416)	promoter-TSS (NM_173416)	83.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	55.72	52.07	43.35	30.97	51.96	54.56	27.24	42.03	59.01	57.24	57.28	36.97
Merged-chr10-40073806-3	chr10	40073705	40073905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	RSINE1|SINE|B4	-48537.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	60.57	45.02	79.86	59.53	82.23	103.79	55.14	98.86	95.98	72.3	98.99	59.52
Merged-chrUn_JH584304-53481-1	chrUn_JH584304	53381	53581	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	6208.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.9	15.06	20.1	21.62
Merged-chr17-42883140-3	chr17	42883020	42883220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6696.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	24.23	26.66	48.49	33.38	15.14	28.85	23.92	23.58	25.77	16.57	27.64	21.62
Merged-chr14-99104680-1	chr14	99104580	99104780	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029320, intron 2 of 17)	intron (NM_029320, intron 2 of 17)	-4910.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.81	2.52	3.99	8.85	5.32	4.7	11.63	9.64	5.51	3.01	13.57	5.64
Merged-chr1-167394310-4	chr1	167394194	167394394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-497.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	26.65	34.71	17.11	63.15	24.14	31.04	34.88	32.55	19.47	23.1	19.6	18.17
Merged-chr18-46959003-3	chr18	46958909	46959109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178377, intron 1 of 6)	CpG	133.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	99.74	125.01	119.8	132.73	110.05	131.7	232.52	118.26	96.97	104.94	108.03	78.0
Merged-chr11-60220575-3	chr11	60220439	60220639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011480)	promoter-TSS (NM_011480)	88.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	41.59	44.52	37.08	47.86	47.46	56.44	27.24	37.43	35.21	39.16	20.6	22.87
Merged-chr15-101160228-1	chr15	101160128	101160328	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-13844.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	3.23	0.25	1.71	0.8	0.82	0.0	4.65	1.26	5.51	10.54	4.02	3.76
Merged-chr18-10181469-3	chr18	10181377	10181577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009071, exon 1 of 33)	5' UTR (NM_009071, exon 1 of 33)	315.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	23.82	21.63	18.83	19.31	29.46	24.77	31.89	19.23	24.59	26.61	23.62	23.81
Merged-chr2-153145530-3	chr2	153145448	153145648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 11 of 12)	L1MB7|LINE|L1	-15753.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	27.46	11.82	34.8	22.93	30.27	30.42	21.92	18.76	32.45	34.14	25.63	19.42
Merged-chr14-62001765-3	chr14	62001657	62001857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	291222.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	40.38	14.84	26.24	62.34	38.05	34.81	66.43	78.48	24.0	27.11	36.68	28.19
Merged-chr14-30479559-3	chr14	30479477	30479677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	12.0	NM_133761	75901.0	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	67.43	79.48	67.31	95.32	73.23	101.6	67.43	70.63	83.0	72.3	116.58	53.26
Merged-chr15-80233968-3	chr15	80233874	80234074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178719)	promoter-TSS (NM_178719)	-106.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	195.44	182.36	199.09	169.33	218.46	244.9	138.18	171.42	229.73	203.85	247.72	115.28
Merged-chr11-118212861-3	chr11	118212767	118212967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112700)	promoter-TSS (NM_001112700)	-125.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	36.75	22.13	43.93	20.91	61.37	49.86	76.73	88.09	40.91	27.11	58.79	36.34
Merged-chr1-9893316-3	chr1	9893216	9893416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133220, intron 17 of 17)	intron (NM_133220, intron 17 of 17)	-15322.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	93.68	86.02	139.19	137.15	102.28	126.37	99.32	163.74	96.18	91.89	104.52	63.59
Merged-chr8-13645115-3	chr8	13645012	13645212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	L1MB8|LINE|L1	32475.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	23.02	16.85	42.21	36.2	46.23	34.18	57.8	74.1	35.6	18.08	40.7	25.69
Merged-chr1-144248407-3	chr1	144248304	144248504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 2 of 4)	intron (NM_015811, intron 2 of 4)	700.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	31.5	36.47	27.38	24.13	23.32	27.91	17.61	23.44	28.32	33.14	23.62	20.05
Merged-chr5-92083048-3	chr5	92082958	92083158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080797)	promoter-TSS (NM_001080797)	-141.0	NM_001080797	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	31.5	31.19	34.23	18.5	23.73	24.77	31.89	25.88	24.59	24.6	34.67	26.0
Merged-chr13-45442600-3	chr13	45442482	45442682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52840.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	22.61	23.64	17.11	17.7	38.46	37.32	32.55	34.09	20.85	18.08	27.64	18.48
Merged-chr14-22759795-3	chr14	22759683	22759883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-216985.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	21.0	19.12	33.09	28.96	40.91	27.91	24.58	43.99	20.26	26.61	35.17	17.23
Merged-chr9-65579072-3	chr9	65578964	65579164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	MIR3|SINE|MIR	1023.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	104.99	91.56	171.14	116.64	119.05	118.22	105.3	130.09	105.23	83.35	175.87	71.74
Merged-chr11-4704432-5	chr11	4704368	4704568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	-124.0	NM_197979	66152.0	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	27.05	25.91	19.97	18.1	14.73	28.85	16.28	19.32	31.27	37.66	24.12	22.56
Merged-chr15-85879280-3	chr15	85879200	85879400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028063)	promoter-TSS (NM_028063)	-27.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	72.68	63.89	71.88	74.0	61.37	71.81	74.41	104.83	96.97	83.85	119.59	51.69
Merged-chr1-150393214-3	chr1	150393122	150393322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145511)	promoter-TSS (NM_145511)	-142.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	282.66	280.96	285.23	270.28	290.46	346.81	295.96	285.45	361.71	405.2	409.52	223.05
Merged-chr17-86151102-3	chr17	86151007	86151207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5932.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	56.53	46.03	51.91	72.8	88.78	95.01	59.13	101.86	62.74	73.31	86.93	35.4
Merged-chr2-173739339-3	chr2	173739233	173739433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 1 of 5)	B1F|SINE|Alu	1762.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	73.89	79.73	84.43	66.77	95.73	89.05	77.73	124.51	112.11	76.32	104.01	65.16
Merged-chr10-98878018-3	chr10	98877922	98878122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36620.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	44.01	27.67	19.97	31.37	62.59	66.48	25.58	45.0	57.63	63.27	57.79	35.09
Merged-chr1-36558259-3	chr1	36558141	36558341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304330)	promoter-TSS (NM_001304330)	140.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	25.04	18.11	17.68	18.9	20.05	18.19	10.63	14.69	19.87	20.59	34.17	18.48
Merged-chr18-80170086-3	chr18	80169995	80170195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16144.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	44.01	49.8	39.93	40.62	45.0	68.05	37.87	47.47	74.74	54.23	101.5	58.89
Merged-chr2-76648176-3	chr2	76648089	76648289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-195.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	281.04	327.99	308.62	353.13	384.15	349.32	358.41	366.53	407.14	447.88	543.69	240.28
Merged-chr1-52800513-3	chr1	52800408	52800608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17180.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	102.97	95.08	160.3	117.04	74.05	119.47	87.36	122.22	148.5	137.07	146.22	97.74
Merged-chr14-30196478-3	chr14	30196371	30196571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	157015.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	20.19	13.83	26.81	23.33	34.77	38.88	16.61	30.84	31.08	24.6	38.69	35.09
Merged-chr5-113918874-3	chr5	113918773	113918973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10167.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	64.2	57.35	44.5	49.47	65.05	81.53	45.84	61.79	73.76	63.77	79.89	45.42
Merged-chr11-70237863-3	chr11	70237782	70237982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177603)	promoter-TSS (NM_001177603)	32.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	150.62	150.92	134.63	122.27	126.82	193.16	111.61	106.6	201.21	218.92	183.91	102.12
Merged-chr8-40584810-3	chr8	40584713	40584913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	49979.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	29.88	42.76	47.35	37.4	42.14	50.17	47.83	70.96	84.97	61.76	83.91	53.26
Merged-chr19-6840696-3	chr19	6840611	6840811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019924)	promoter-TSS (NM_019924)	-84.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	23.42	25.66	26.24	17.7	21.27	32.93	14.95	19.35	31.47	31.13	22.61	14.1
Merged-chr2-130563746-3	chr2	130563655	130563855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	-2.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	65.01	74.7	69.03	60.33	113.73	114.45	77.4	96.79	64.51	69.29	118.08	55.45
Merged-chr4-56953337-3	chr4	56953235	56953435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5906.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	27.46	23.14	32.52	42.23	21.68	33.55	33.55	44.83	19.67	9.54	32.16	19.11
Merged-chrX-163845632-3	chrX	163845539	163845739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63378.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	23.02	18.11	34.23	38.61	29.46	29.79	56.8	73.74	22.82	19.58	47.23	27.57
Merged-chr16-16525648-3	chr16	16525541	16525741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1770.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	75.11	35.47	61.61	72.4	66.27	63.34	58.79	57.42	67.46	50.71	62.81	52.94
Merged-chr8-26977077-3	chr8	26976974	26977174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101502)	promoter-TSS (NM_001101502)	-262.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	155.46	168.02	134.06	155.65	168.96	220.76	122.9	147.08	195.31	194.82	217.07	123.43
Merged-chr2-104732264-3	chr2	104732138	104732338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	10563.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	49.26	33.2	40.5	48.67	40.5	60.21	58.46	65.05	52.32	55.23	51.76	44.48
Merged-chr8-84661303-1	chr8	84661203	84661403	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010499)	TTS (NM_010499)	1549.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	29.48	22.64	13.12	10.86	11.86	29.48	14.62	7.77	25.77	24.6	27.13	14.1
Merged-chr8-71747317-2	chr8	71747223	71747423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21642.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	16.56	26.66	27.38	40.22	4.09	5.64	9.63	3.76	25.96	25.11	40.7	30.39
Merged-chr11-115188841-3	chr11	115188740	115188940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	1353.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	137.29	124.76	126.07	124.68	109.23	119.16	96.33	119.97	137.48	123.52	120.6	81.76
Merged-chr12-76765654-3	chr12	76765548	76765748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154884, intron 1 of 2)	CpG	110.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	67.84	77.47	70.74	78.03	74.46	72.12	86.36	58.82	86.15	90.88	78.89	56.07
Merged-chr8-3314016-3	chr8	3313912	3314112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34395.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	39.57	32.2	49.06	72.8	42.96	31.36	30.56	56.94	42.09	36.15	42.71	25.37
Merged-chr15-62057628-3	chr15	62057529	62057729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	L1MB4|LINE|L1	18372.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	94.49	63.64	127.78	104.17	99.0	95.64	109.28	114.65	78.48	86.36	96.48	86.46
Merged-chr14-60205199-3	chr14	60205099	60205299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001362440)	TTS (NM_001362440)	23716.0	NR_030458	751526.0		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	31.5	25.91	26.24	41.02	35.59	44.21	19.6	40.65	23.8	25.11	43.21	25.69
Merged-chr5-125183786-1	chr5	125183686	125183886	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4572.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.86	3.77	3.42	5.23	16.36	19.13	13.62	15.84	6.49	5.02	4.02	6.89
Merged-chr2-98667154-3	chr2	98667083	98667283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199526.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1730.67	1328.57	1517.41	1162.36	2340.48	1366.86	1955.49	1885.63	2706.62	3182.35	2852.09	2940.32
Merged-chr1-85895698-3	chr1	85895596	85895796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1186.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	186.96	195.69	223.05	205.93	190.64	217.31	171.4	181.4	240.75	226.45	237.67	134.08
Merged-chr11-121713732-3	chr11	121713598	121713798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	11271.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	17.36	23.39	20.54	19.71	20.05	19.13	12.62	25.6	24.78	11.55	20.1	11.28
Merged-chrX-73966454-3	chrX	73966383	73966583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008224)	promoter-TSS (NM_008224)	-126.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	48.46	39.74	64.46	29.36	45.82	63.66	46.5	41.41	70.22	46.7	70.35	33.21
Merged-chr15-67481907-3	chr15	67481793	67481993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	255124.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	129.21	104.89	170.0	132.73	152.19	205.7	99.32	174.03	171.71	148.12	143.21	103.69
Merged-chr18-25487150-3	chr18	25487040	25487240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362310, intron 11 of 12)	C-rich|Low_complexity|Low_complexity	192608.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	16.15	18.36	15.97	18.5	38.46	27.91	37.54	40.82	38.55	29.62	58.79	23.18
Merged-chr5-147063506-2	chr5	147063423	147063623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	13049.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	37.55	20.63	21.68	21.32	39.27	39.51	28.23	35.24	1.97	3.51	2.01	2.51
Merged-chr2-30807749-3	chr2	30807655	30807855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356435)	promoter-TSS (NM_001356435)	-213.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	189.78	228.14	212.78	216.79	297.83	347.44	221.23	255.06	332.21	372.06	408.52	172.3
Merged-chr8-104571200-3	chr8	104571104	104571304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20264.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	24.23	24.4	23.39	28.56	30.68	16.62	21.92	22.51	32.45	28.62	28.14	19.11
Merged-chr1-155076136-3	chr1	155076025	155076225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	7139.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	38.76	42.26	66.17	41.02	54.0	46.1	60.46	62.33	60.97	31.63	68.84	49.5
Merged-chr12-17544762-3	chr12	17544647	17544847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-126.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	140.12	124.76	134.63	131.52	193.51	249.6	149.14	187.01	246.25	250.55	308.52	145.67
Merged-chrUn_JH584304-32488-1	chrUn_JH584304	32388	32588	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27201.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	36.19	35.15	35.68	29.13
Merged-chr13-5635182-3	chr13	5635096	5635296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	222896.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	18.57	20.37	44.5	17.7	14.32	24.15	21.26	12.39	26.36	28.12	29.14	19.74
Merged-chr4-63424266-3	chr4	63424175	63424375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008792, intron 7 of 11)	intron (NM_001008792, intron 7 of 11)	-20830.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	30.69	23.64	30.8	14.08	16.36	39.51	20.59	22.88	43.27	34.14	51.25	20.05
Merged-chr4-82859640-3	chr4	82859536	82859736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026647)	promoter-TSS (NM_026647)	37.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	38.76	36.72	49.06	52.29	31.5	42.65	66.77	43.85	39.93	55.73	45.73	32.27
Merged-chr2-154314086-3	chr2	154313974	154314174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001025574, exon 7 of 15)	exon (NM_001025574, exon 7 of 15)	6830.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	24.23	27.42	41.07	25.34	88.37	71.49	63.44	34.93	36.58	50.71	46.23	39.78
Merged-chr16-44120322-2	chr16	44120222	44120422	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18937.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	8.48	6.79	8.56	7.64	23.32	20.38	25.58	23.27	14.55	16.57	15.58	12.53
Merged-chr5-8368149-3	chr5	8368005	8368205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098225)	promoter-TSS (NM_001098225)	55.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	31.09	25.15	39.93	41.83	32.73	38.57	45.84	58.6	24.39	22.09	51.76	17.54
Merged-chr8-71507805-3	chr8	71507691	71507891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_032398, exon 3 of 6)	exon (NM_032398, exon 3 of 6)	3978.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	62.59	43.01	51.91	60.33	29.05	31.04	15.28	29.92	75.33	68.29	70.35	46.99
Merged-chr19-4113317-3	chr19	4113234	4113434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276284)	TTS (NM_001276284)	8241.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	33.11	19.37	45.07	35.8	69.96	49.23	34.21	47.92	64.32	55.73	45.22	35.09
Merged-chr9-56098004-4	chr9	56097870	56098070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	7994.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	8.48	11.57	21.68	16.49	9.82	16.62	10.96	9.39	20.46	22.59	18.09	11.9
Merged-chr11-54956051-3	chr11	54955927	54956127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199275, exon 2 of 19)	5' UTR (NM_001199275, exon 2 of 19)	6913.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	75.91	101.62	91.27	63.15	81.82	121.35	85.7	65.5	94.41	113.98	99.49	56.39
Merged-chr10-93365107-3	chr10	93364995	93365195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28884.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	18.98	20.12	22.82	20.51	20.05	33.24	23.25	21.17	16.13	6.03	19.6	14.72
Merged-chr4-129640951-5	chr4	129640835	129641035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005506)	promoter-TSS (NM_001005506)	-130.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	55.32	58.86	55.33	52.69	52.77	63.66	55.8	38.94	59.01	67.28	46.23	50.44
Merged-chr5-53540016-3	chr5	53539904	53540104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15775.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	33.11	17.61	29.66	28.15	19.64	11.29	23.58	43.57	24.98	21.59	43.72	23.81
Merged-chr7-126503532-3	chr7	126503420	126503620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-83.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	227.74	213.04	179.69	183.0	196.37	260.27	140.51	147.98	215.96	312.31	260.29	150.37
Merged-chr6-128845517-3	chr6	128845419	128845619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19204.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	44.42	46.53	52.48	46.66	66.27	58.64	40.86	67.29	89.3	52.72	105.02	48.24
Merged-chr5-135702787-3	chr5	135702690	135702890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	L1MC4a|LINE|L1	13645.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	50.07	49.05	75.87	49.47	83.46	100.34	61.78	74.13	103.06	106.95	89.44	72.05
Merged-chr4-33282541-3	chr4	33282452	33282652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27759.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	123.16	136.33	94.13	90.09	87.96	121.35	110.95	66.56	133.75	131.05	116.58	73.62
Merged-chr8-18846938-3	chr8	18846841	18847041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026792, intron 1 of 7)	CpG	662.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	65.01	37.73	65.6	69.58	63.41	54.56	78.06	80.5	69.63	66.28	89.44	58.27
Merged-chr17-31074825-3	chr17	31074750	31074950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17156.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	60.17	36.47	26.81	39.42	69.96	102.54	69.76	60.62	64.51	48.2	57.28	31.64
Merged-chr4-36014287-3	chr4	36014183	36014383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169079.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	17.77	24.65	38.79	22.12	91.23	66.16	89.02	147.25	79.86	50.71	115.07	56.39
Merged-chr2-117405634-3	chr2	117405519	117405719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	-62742.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	25.04	13.58	20.54	24.13	24.55	36.69	14.28	28.37	29.9	18.08	37.69	17.86
Merged-chr16-32914192-3	chr16	32914082	32914282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310674)	promoter-TSS (NM_001310674)	82.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	33.11	54.08	65.6	42.23	53.18	54.25	43.85	41.78	36.58	39.16	23.11	19.42
Merged-chr17-29111512-2	chr17	29111400	29111600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17731.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	25.04	25.15	37.65	18.5	37.23	43.59	30.23	35.72	2.36	2.51	5.02	3.13
Merged-chr10-51597426-3	chr10	51597315	51597515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-6955.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	16.96	21.13	53.05	27.35	51.14	55.5	51.15	64.09	35.99	28.62	62.31	36.97
Merged-chr4-132078554-3	chr4	132078461	132078661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3248.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	83.99	65.9	78.15	78.43	87.14	88.74	72.08	74.41	98.15	88.37	114.06	69.55
Merged-chr3-133093131-3	chr3	133093023	133093223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-1084.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	21.8	29.43	25.67	18.1	20.86	26.97	22.26	31.46	38.75	32.13	37.18	32.58
Merged-chr2-21205717-3	chr2	21205621	21205821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	-3.0	NM_001001297	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	127.2	112.18	107.82	109.8	107.59	138.29	107.96	122.02	170.33	170.21	234.66	105.26
Merged-chr10-128259099-3	chr10	128258992	128259192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	4961.0	NM_133996	28194.0	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	18.17	15.34	27.95	37.81	33.96	31.04	25.58	42.62	24.0	21.09	24.12	14.1
Merged-chr4-144906661-3	chr4	144906558	144906758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	13521.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	20.59	12.58	35.37	31.77	34.77	45.78	59.79	85.12	25.37	25.11	35.68	29.13
Merged-chr18-65684029-3	chr18	65683942	65684142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-14226.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	184.13	182.36	172.85	180.19	171.01	254.31	180.7	176.3	202.79	163.18	214.56	130.32
Merged-chr16-16146824-3	chr16	16146724	16146924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146068)	promoter-TSS (NM_146068)	27.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	74.3	67.16	95.84	85.67	108.0	113.2	75.73	97.09	73.17	95.4	107.03	60.15
Merged-chr12-73907869-3	chr12	73907756	73907956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-11.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	151.02	159.47	147.18	138.36	236.05	183.44	147.48	184.46	226.58	211.39	248.23	139.4
Merged-chr6-29474053-3	chr6	29473950	29474150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001145360)	TTS (NM_001145360)	2613.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	47.24	43.01	43.35	40.62	77.32	81.84	40.86	74.89	81.63	63.27	119.59	44.8
Merged-chr17-10359602-3	chr17	10359513	10359713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35011.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	88.84	97.34	98.69	119.86	83.46	104.42	60.79	98.97	125.49	85.86	143.21	71.11
Merged-chr7-113637894-1	chr7	113637794	113637994	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-72907.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	4.44	5.28	2.85	8.85	6.95	1.88	10.96	11.02	4.13	4.02	8.04	5.01
Merged-chr17-28694888-3	chr17	28694782	28694982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	2314.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	55.32	36.97	40.5	29.36	43.77	58.32	27.9	26.55	55.07	56.24	41.71	17.54
Merged-chr8-122376518-3	chr8	122376407	122376607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-102.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	75.11	74.2	89.56	65.16	87.96	96.58	64.44	51.79	127.45	114.98	126.12	69.23
Merged-chr9-57640641-3	chr9	57640560	57640760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4993.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	60.57	37.23	66.17	59.93	60.55	40.14	74.74	88.77	34.81	29.12	71.86	42.6
Merged-chr10-121461545-3	chr10	121461441	121461641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	14709.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	60.97	63.13	81.0	64.35	71.59	62.4	100.98	84.31	51.53	37.66	54.27	33.83
Merged-chr19-4625637-3	chr19	4625511	4625711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023131)	promoter-TSS (NM_023131)	6.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	70.66	64.14	50.2	43.84	45.41	83.72	47.83	52.23	60.19	61.76	44.22	36.34
Merged-chr4-66796951-3	chr4	66796869	66797069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30582.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	75.51	58.61	79.29	70.38	80.18	79.96	65.44	95.92	76.91	68.79	95.97	52.32
Merged-chr5-95898128-3	chr5	95898025	95898225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58814.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	41.19	49.8	50.2	40.62	92.87	126.37	82.05	47.52	55.27	82.85	53.77	21.3
Merged-chr2-34785452-1	chr2	34785352	34785552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145522, intron 5 of 7)	ID_B1|SINE|B4	13362.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	12.92	11.32	2.28	2.01	6.14	18.81	0.0	2.72	6.88	4.02	1.0	1.57
Merged-chr17-24550443-1	chr17	24550343	24550543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013630, exon 1 of 46)	exon (NM_013630, exon 1 of 46)	493.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	24.23	28.67	16.54	24.13	25.36	30.42	23.58	21.22	25.96	30.63	35.68	29.45
Merged-chr9-35124450-3	chr9	35124339	35124539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027030)	TTS (NM_027030)	-7575.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	102.97	95.58	58.76	46.66	163.64	234.87	115.6	89.94	129.62	160.17	138.69	56.7
Merged-chr14-51942423-3	chr14	51942316	51942516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19643.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	46.03	49.05	37.08	55.5	45.41	55.19	34.88	44.5	30.68	34.65	40.7	22.24
Merged-chr12-111413520-3	chr12	111413428	111413628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3902.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	39.17	37.23	26.81	27.35	24.55	43.59	24.25	28.18	42.29	33.14	39.7	20.36
Merged-chr11-3105524-3	chr11	3105447	3105647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18474.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	114.27	125.76	118.08	136.35	128.87	136.09	110.61	102.25	167.58	203.85	173.86	101.81
Merged-chr19-42001813-3	chr19	42001722	42001922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	20059.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	53.7	50.05	50.77	28.96	45.82	66.48	35.21	40.32	52.32	47.2	57.79	31.95
Merged-chr10-85871847-3	chr10	85871737	85871937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	6.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	41.59	40.75	42.78	27.35	33.96	41.39	23.92	35.97	63.33	74.31	66.83	36.34
Merged-chr7-139235033-3	chr7	139234946	139235146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-13436.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	20.59	22.13	22.82	21.32	33.96	35.12	24.58	33.08	41.11	49.21	70.85	27.88
Merged-chr11-4661592-3	chr11	4661509	4661709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	23816.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	51.69	43.51	48.49	38.61	44.18	44.84	40.86	49.15	69.23	38.16	57.28	48.87
Merged-chr15-97821084-3	chr15	97820978	97821178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	URR1B|DNA|hAT-Charlie	-6215.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	20.59	30.69	24.53	24.53	38.05	43.59	21.26	21.73	28.52	15.57	34.17	16.92
Merged-chr7-51879419-1	chr7	51879319	51879519	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008087, intron 1 of 7)	intron (NM_008087, intron 1 of 7)	452.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.81	1.26	0.0	2.41	0.82	0.0	2.66	5.24	24.19	19.08	39.19	20.05
Merged-chr8-124231301-3	chr8	124231209	124231409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-85.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	35.53	33.96	25.67	17.29	40.91	26.03	22.92	23.78	50.16	35.65	67.33	19.11
Merged-chr9-43743812-1	chr9	43743712	43743912	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-764.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	5.25	4.78	6.85	8.85	5.32	14.11	14.62	10.35	2.16	9.04	3.52	11.59
Merged-chr18-35022015-3	chr18	35021928	35022128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67677.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	30.28	44.02	43.93	28.15	45.0	47.66	27.9	45.31	49.37	46.7	51.25	34.15
Merged-chr12-73687588-3	chr12	73687500	73687700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102804.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	65.82	56.09	76.44	69.18	83.05	89.68	72.08	99.0	80.84	72.81	97.98	50.12
Merged-chr16-32189301-3	chr16	32189210	32189410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	9510.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	113.47	99.86	97.55	111.01	103.09	91.56	61.12	74.69	80.45	87.37	95.47	70.17
Merged-chr5-140733481-3	chr5	140733383	140733583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	9356.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	123.56	70.68	86.71	100.55	93.28	89.05	68.1	98.78	85.17	98.91	116.58	46.05
Merged-chr15-97517968-3	chr15	97517859	97518059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187863.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	32.71	21.88	55.9	41.83	38.86	54.56	75.4	63.45	44.25	21.09	45.22	13.16
Merged-chr2-28498646-3	chr2	28498537	28498737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139197, intron 3 of 6)	intron (NM_139197, intron 3 of 6)	1746.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	17.77	34.21	23.39	11.66	44.18	62.4	18.6	17.16	57.63	57.74	26.63	15.35
Merged-chr4-48042888-3	chr4	48042811	48043011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2394.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	124.77	101.11	185.4	120.26	118.64	153.65	126.89	126.87	232.29	209.38	293.45	144.73
Merged-chr12-86897343-3	chr12	86897243	86897443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12529.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	74.3	83.0	56.48	80.44	87.14	85.29	80.05	55.15	110.93	150.13	102.0	66.41
Merged-chr15-58988992-3	chr15	58988884	58989084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55174.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	45.23	38.48	55.9	47.06	78.14	55.5	73.08	93.06	58.02	75.32	73.86	47.93
Merged-chr4-155563519-3	chr4	155563430	155563630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	-285.0	NM_001159637	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	152.63	143.87	154.59	152.03	236.46	264.66	151.8	179.86	268.28	293.23	294.45	139.09
Merged-chr11-116168245-3	chr11	116168154	116168354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172571)	promoter-TSS (NM_172571)	-76.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	70.66	65.4	56.48	45.05	78.96	88.74	39.2	64.12	89.1	65.27	84.92	40.72
Merged-chr4-133814205-3	chr4	133814091	133814291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	60540.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	52.49	46.53	34.8	32.58	39.68	74.32	32.22	29.52	55.86	68.79	67.84	49.18
Merged-chr1-72104229-2	chr1	72104143	72104343	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99048.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	1.01	0.0	0.0	33.55	49.23	50.82	46.71	42.88	30.13	69.34	19.42
Merged-chr5-100570214-3	chr5	100570106	100570306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1999.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	47.24	60.12	55.9	54.7	45.0	39.2	29.56	26.38	88.51	58.75	94.47	57.64
Merged-chr15-83174348-3	chr15	83174239	83174439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2131.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	115.49	101.62	105.53	96.13	128.05	191.59	102.97	101.44	169.74	178.25	177.38	94.92
Merged-chr14-74847817-3	chr14	74847712	74847912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	100065.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	25.84	36.97	20.54	15.28	29.05	48.92	19.6	17.64	42.09	51.72	29.14	19.11
Merged-chr1-120057229-3	chr1	120057121	120057321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 12 of 13)	HAL1|LINE|L1	16559.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	35.94	26.41	41.64	35.39	29.46	36.69	44.84	42.5	55.86	58.24	47.23	36.03
Merged-chrX-7841730-3	chrX	7841625	7841825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138604)	promoter-TSS (NM_138604)	-106.0	NM_001290536	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	108.22	96.08	134.63	97.33	91.23	135.15	75.73	107.61	120.18	130.05	135.67	68.92
Merged-chr7-120982368-3	chr7	120982267	120982467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	-55.0	NM_001354986	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	138.91	106.14	117.51	122.27	133.37	142.68	102.97	117.76	157.55	149.63	137.68	114.34
Merged-chr6-36989630-1	chr6	36989530	36989730	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 20 of 32)	L1MD2|LINE|L1	-179451.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	4.85	1.76	4.56	2.41	0.82	4.7	9.97	10.51	3.93	4.52	4.52	3.13
Merged-chr1-165661897-3	chr1	165661794	165661994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-27353.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	155.87	121.74	207.65	149.22	204.96	267.16	204.95	217.23	216.95	181.76	248.73	105.88
Merged-chr5-121191286-3	chr5	121191198	121191398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109992)	promoter-TSS (NM_001109992)	99.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	25.44	32.95	22.82	29.76	29.86	28.85	40.52	19.93	31.27	21.59	19.6	21.62
Merged-chr7-80836141-3	chr7	80836036	80836236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25972.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	50.88	44.02	53.62	52.69	69.96	56.13	47.5	78.28	86.35	61.76	81.4	52.63
Merged-chr17-24344847-1	chr17	24344747	24344947	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031621, intron 2 of 29)	intron (NM_001031621, intron 2 of 29)	2405.0	NM_001031621	381072.0	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	0.81	0.5	0.0	4.02	3.27	4.7	10.63	1.91	21.44	23.6	30.65	12.84
Merged-chr17-43072500-2	chr17	43072403	43072603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	55948.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	23.82	25.15	22.25	28.56	26.59	34.81	25.91	30.53	5.11	1.51	4.52	1.57
Merged-chr15-59744651-3	chr15	59744536	59744736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50323.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	107.81	92.06	97.55	109.4	94.09	105.05	88.03	98.89	129.03	134.06	119.59	89.91
Merged-chr6-115544669-3	chr6	115544566	115544766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199033)	promoter-TSS (NM_199033)	-38.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	91.26	83.26	75.87	60.33	94.5	103.17	62.45	56.75	113.29	127.03	85.42	60.46
Merged-chrX-73915100-3	chrX	73914995	73915195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3797.0	NM_001162424	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	115.08	133.06	183.12	148.01	127.64	156.79	138.85	137.1	184.49	177.24	227.12	125.31
Merged-chr6-31111658-3	chr6	31111503	31111703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-48510.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	18.57	26.16	49.06	46.66	26.59	32.93	95.33	105.98	67.27	41.67	106.53	65.16
Merged-chr4-132074707-3	chr4	132074591	132074791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128607, intron 1 of 17)	CpG	622.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	39.98	19.62	42.21	27.75	36.82	37.94	36.21	54.06	40.12	26.11	48.74	31.64
Merged-chr2-152669479-3	chr2	152669410	152669610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159553)	promoter-TSS (NM_001159553)	49.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	50.88	62.13	59.33	51.08	52.37	54.88	42.19	34.54	69.63	75.82	63.82	39.47
Merged-chr6-29517334-3	chr6	29517227	29517427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9298.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	42.8	19.37	18.83	25.34	34.77	43.27	24.58	37.15	42.48	35.15	43.72	31.33
Merged-chr4-147927876-3	chr4	147927779	147927979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 6 of 18)	intron (NM_011122, intron 6 of 18)	8897.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	25.84	19.87	25.67	14.48	48.68	37.94	28.9	46.23	49.17	58.24	81.4	35.09
Merged-chr19-46003480-3	chr19	46003385	46003585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176785)	promoter-TSS (NM_176785)	7.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	71.88	71.69	55.9	45.85	79.78	110.38	53.81	65.75	66.87	71.3	84.42	50.75
Merged-chr12-70912040-3	chr12	70911947	70912147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25810.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	26.25	22.39	18.83	23.33	24.14	25.4	26.57	26.58	25.77	27.11	30.15	28.51
Merged-chr11-114908238-2	chr11	114908149	114908349	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18208.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	21.0	8.55	15.97	24.94	49.5	31.98	52.48	37.54	57.43	32.13	58.29	40.72
Merged-chr7-141455189-4	chr7	141455138	141455338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	50.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	59.76	65.4	43.35	46.66	51.55	60.52	33.88	37.18	57.63	50.71	44.22	22.87
Merged-chr11-116682697-3	chr11	116682575	116682775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009180, intron 5 of 8)	intron (NM_009180, intron 5 of 8)	8078.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	72.28	52.32	78.15	47.86	57.27	88.11	42.19	69.48	49.76	48.2	68.84	54.51
Merged-chr11-98954710-3	chr11	98954616	98954816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5755.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	25.04	10.82	29.09	30.16	16.36	17.87	14.95	28.99	21.64	31.13	35.17	17.23
Merged-chr10-125764593-3	chr10	125764492	125764692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-201627.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	25.44	19.12	29.66	27.75	29.46	39.51	22.59	42.2	42.68	62.76	88.94	31.01
Merged-chr3-9885078-3	chr3	9884922	9885122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51343.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	24.63	13.08	5.7	19.31	22.5	24.15	21.26	27.7	111.92	81.84	103.01	56.7
Merged-chr15-40958337-3	chr15	40958235	40958435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-215366.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	18.17	12.07	30.23	18.5	33.96	31.04	45.84	49.77	40.71	37.66	50.75	22.87
Merged-chr7-141394309-3	chr7	141394191	141394391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011528, intron 1 of 7)	L1MC4a|LINE|L1	2131.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	25.84	24.9	43.93	24.13	70.77	62.4	58.79	52.07	46.22	39.16	41.71	28.19
Merged-chr11-60353092-3	chr11	60352998	60353198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-193.0	NM_001359810	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	222.9	234.17	252.71	250.17	275.33	338.97	244.81	246.28	291.69	367.54	375.35	168.85
Merged-chr10-62504072-3	chr10	62503971	62504171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	3686.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	40.38	46.03	68.45	59.53	84.28	115.08	56.47	112.01	99.52	88.37	119.59	65.79
Merged-chr9-70012606-3	chr9	70012508	70012708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	60.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	37.55	54.33	43.93	46.66	34.36	43.59	37.87	27.28	44.25	47.2	48.24	28.82
Merged-chr10-83648690-3	chr10	83648535	83648735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145220)	promoter-TSS (NM_145220)	29.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	63.4	62.88	61.61	63.95	61.77	47.35	45.51	71.58	69.63	56.24	72.36	47.93
Merged-chr16-35888360-3	chr16	35888250	35888450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16968.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	43.61	32.45	57.05	57.11	33.14	61.46	32.22	38.38	69.82	55.73	52.76	36.34
Merged-chrX-61680620-3	chrX	61680518	61680718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28998.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	15.75	22.64	42.78	25.74	49.91	40.45	47.83	69.59	81.63	72.3	99.99	62.97
Merged-chr1-151689734-3	chr1	151689627	151689827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 6 of 13)	intron (NM_022018, intron 6 of 13)	65000.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	49.26	50.05	65.03	52.69	46.64	89.68	36.87	51.03	54.48	41.17	62.81	33.52
Merged-chr10-16589604-3	chr10	16589496	16589696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	506186.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	28.67	14.84	35.94	41.02	42.96	42.02	39.2	56.1	49.17	39.16	47.74	27.88
Merged-chr18-36281033-3	chr18	36280945	36281145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008989)	promoter-TSS (NM_008989)	-117.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	52.49	46.53	44.5	33.38	69.55	77.14	32.22	56.05	88.12	102.93	96.48	72.05
Merged-chr9-14275132-3	chr9	14275038	14275238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	101.76	77.97	78.15	77.62	128.87	160.86	86.7	141.11	113.49	88.37	153.26	49.18
Merged-chr4-155669491-3	chr4	155669376	155669576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256107)	promoter-TSS (NM_001256107)	-222.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	52.9	71.69	68.45	61.13	90.41	93.76	79.39	41.97	73.36	98.41	83.41	64.53
Merged-chr15-99820116-3	chr15	99820023	99820223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023063)	promoter-TSS (NM_023063)	26.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	47.65	36.22	44.5	39.01	30.27	28.22	11.96	22.77	50.94	42.18	46.73	23.81
Merged-chr5-21136733-3	chr5	21136649	21136849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39530.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	24.63	19.37	37.08	29.36	33.55	25.09	33.88	36.98	27.34	51.72	45.22	16.92
Merged-chr3-94583143-3	chr3	94583051	94583251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-435.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	68.24	65.9	61.61	59.93	54.82	74.32	43.51	74.86	88.12	87.37	80.9	58.89
Merged-chr6-37870648-3	chr6	37870552	37870752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-159.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	216.84	217.57	267.54	217.99	245.46	241.76	226.21	316.52	341.45	320.85	452.23	183.89
Merged-chr14-47189422-3	chr14	47189342	47189542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	-29.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	46.44	67.66	50.77	43.44	37.64	56.76	23.92	43.21	83.4	52.72	44.22	38.53
Merged-chr10-6717342-3	chr10	6717250	6717450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAG)n|Simple_repeat|Simple_repeat	-41243.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	135.68	120.23	98.69	140.77	119.46	154.59	67.76	144.48	173.28	169.71	183.91	95.86
Merged-chr5-90772444-3	chr5	90772356	90772556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	21.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	55.72	38.74	65.6	55.91	57.68	51.43	46.17	61.46	62.55	41.17	74.37	19.74
Merged-chr7-16295622-3	chr7	16295540	16295740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8845.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	78.74	83.76	62.18	81.65	87.96	133.9	47.83	92.69	106.6	95.9	103.51	66.41
Merged-chr11-59227008-3	chr11	59226911	59227111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1151.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	37.15	32.95	34.23	25.74	36.82	53.93	17.94	50.27	39.34	39.67	48.24	17.86
Merged-chr11-43411606-3	chr11	43411523	43411723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14358.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	48.46	50.81	70.17	53.09	68.32	68.99	45.18	58.68	76.12	69.29	80.4	36.97
Merged-chr6-86397116-3	chr6	86397014	86397214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	36.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	31.09	34.71	44.5	37.0	34.36	52.05	36.54	37.65	36.78	32.64	52.76	22.24
Merged-chr15-78877319-4	chr15	78877223	78877423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145929, exon 1 of 17)	5' UTR (NM_145929, exon 1 of 17)	133.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	58.15	58.61	45.64	52.69	71.59	81.22	54.48	48.45	68.45	72.3	73.86	52.94
Merged-chr8-11098601-3	chr8	11098518	11098718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90188.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	83.18	70.43	107.82	98.54	153.0	191.91	115.93	148.49	111.52	89.88	113.06	50.75
Merged-chr10-14055579-3	chr10	14055488	14055688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	89209.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	55.72	45.78	79.29	78.43	84.28	95.33	78.06	109.04	56.25	66.78	68.34	51.06
Merged-chr6-34384245-3	chr6	34384147	34384347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172398)	promoter-TSS (NM_172398)	0.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	36.34	28.93	30.23	52.69	51.96	29.16	32.22	44.64	45.43	39.16	58.79	31.01
Merged-chr13-52036541-3	chr13	52036450	52036650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60191.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	14.94	21.63	27.95	20.11	30.27	22.89	11.63	19.96	30.49	35.65	27.64	21.93
Merged-chr2-28840486-3	chr2	28840407	28840607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	101.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	22.21	25.15	13.69	33.78	31.09	36.69	20.93	13.74	36.98	30.13	31.15	20.36
Merged-chr15-81831617-3	chr15	81831515	81831715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20201.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	56.94	39.74	49.63	37.4	51.96	61.46	23.92	49.09	53.3	58.75	73.36	49.81
Merged-chrUn_JH584304-2040-1	chrUn_JH584304	1940	2140	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57649.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.96	9.54	14.57	9.71
Merged-chrX-74270276-3	chrX	74270185	74270385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052835)	promoter-TSS (NM_052835)	-531.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	62.59	50.56	62.18	49.87	49.09	64.91	43.51	54.36	69.63	69.29	86.43	49.5
Merged-chr2-152742625-3	chr2	152742527	152742727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6376.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	46.84	49.05	27.38	35.39	86.32	112.89	18.93	72.0	60.19	58.24	65.83	38.22
Merged-chr1-37562153-3	chr1	37562043	37562243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21127.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	58.15	51.56	60.47	76.82	44.18	47.35	36.54	41.64	33.04	34.14	48.24	29.13
Merged-chr19-5424971-3	chr19	5424860	5425060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	19.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	76.72	83.0	85.0	50.27	99.0	102.22	50.49	68.22	128.24	115.48	105.52	63.59
Merged-chr15-67174169-3	chr15	67174071	67174271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2711.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	38.36	51.31	54.19	48.26	48.68	59.27	26.91	51.59	50.35	75.32	67.33	30.7
Merged-chr4-55816021-3	chr4	55815923	55816123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-283548.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	54.51	60.87	31.38	49.07	54.41	50.17	44.51	39.73	53.7	64.77	52.76	39.16
Merged-chr13-23706187-3	chr13	23706078	23706278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347493, intron 2 of 4)	intron (NM_001347493, intron 2 of 4)	4676.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	34.32	30.18	42.78	43.84	54.82	49.54	39.86	45.65	70.81	52.22	67.33	36.34
Merged-chr16-37539795-3	chr16	37539693	37539893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-4.0	NM_001355727	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	165.96	144.38	152.88	183.0	181.64	210.09	132.2	207.37	242.32	191.8	234.66	125.62
Merged-chr6-82824529-3	chr6	82824449	82824649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50095.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	43.21	37.23	69.6	48.67	50.73	46.41	56.47	62.78	42.88	34.65	54.27	29.76
Merged-chr17-26503132-3	chr17	26503034	26503234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	128.81	111.93	88.42	125.08	144.41	151.46	64.11	102.2	185.87	145.61	133.16	91.79
Merged-chr15-83100189-3	chr15	83100082	83100282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023475)	promoter-TSS (NM_023475)	-23.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	149.81	160.98	104.39	95.72	163.23	194.42	89.35	118.57	165.61	182.26	134.67	88.97
Merged-chr8-110997821-3	chr8	110997725	110997925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-2.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	54.92	43.01	57.62	37.81	51.55	60.21	46.5	49.93	64.91	53.73	59.29	38.22
Merged-chr2-91335386-3	chr2	91335283	91335483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	70268.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	35.13	26.91	35.94	41.43	32.73	47.35	45.51	48.79	66.68	53.73	97.98	35.4
Merged-chr15-90224225-3	chr15	90224121	90224321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033441)	promoter-TSS (NM_001033441)	-90.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	136.89	162.49	180.83	209.55	171.41	177.48	165.42	222.65	235.63	169.71	275.36	127.81
Merged-chr2-32363042-3	chr2	32362934	32363134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	24.0	NM_001252536	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	76.32	80.99	45.07	66.36	73.23	90.0	46.17	64.71	75.33	98.41	98.99	50.75
Merged-chr2-128796663-3	chr2	128796552	128796752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-21651.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	27.05	28.42	32.52	30.16	47.05	59.27	43.51	66.03	26.36	23.1	39.19	20.68
Merged-chr8-25720094-3	chr8	25720013	25720213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_121643)	promoter-TSS (NR_121643)	65.0	NR_121643	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	40.38	44.52	30.8	50.27	34.77	38.26	47.5	45.7	32.06	28.62	37.69	29.13
Merged-chr8-71521824-3	chr8	71521732	71521932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10063.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	60.17	64.89	61.61	66.77	65.87	81.84	38.86	51.03	84.97	72.81	98.49	57.01
Merged-chr16-30009079-3	chr16	30008981	30009181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	CpG	414.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	24.63	27.42	29.09	47.86	18.82	26.65	21.59	41.19	24.39	28.62	33.16	26.0
Merged-chr11-110372772-3	chr11	110372688	110372888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26314.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	35.13	37.73	47.92	33.38	47.05	50.8	36.54	44.3	54.68	42.18	66.33	41.35
Merged-chr12-69447431-3	chr12	69447343	69447543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28107.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	77.53	70.43	78.72	75.61	85.5	103.79	58.46	77.33	96.38	83.35	82.91	78.63
Merged-chr14-33193987-3	chr14	33193879	33194079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8913.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	44.42	49.3	58.19	67.97	54.82	58.01	40.19	80.05	66.28	73.31	77.38	46.99
Merged-chr3-96160389-3	chr3	96160286	96160486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-1584.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	18.98	20.37	29.09	32.98	40.5	52.99	25.24	46.37	38.94	42.18	49.75	33.52
Merged-chr18-38212853-3	chr18	38212763	38212963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3101.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	44.01	28.93	37.08	45.45	50.73	42.02	13.29	49.71	50.55	46.7	55.27	37.59
Merged-chr16-33934901-3	chr16	33934808	33935008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	32130.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	13.73	16.1	32.52	35.39	25.77	21.95	15.61	40.46	25.37	24.1	28.64	23.18
Merged-chr2-174077920-3	chr2	174077812	174078012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	861.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	51.28	24.9	45.07	45.85	42.14	35.43	23.58	38.52	45.63	55.23	48.24	38.53
Merged-chr10-77613678-3	chr10	77613575	77613775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125903)	promoter-TSS (NR_125903)	-34.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	39.17	31.44	36.51	46.66	51.14	49.23	29.9	39.87	54.68	47.7	44.72	28.51
Merged-chr1-13659105-3	chr1	13658994	13659194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	1415.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	30.69	30.69	44.5	37.81	45.41	40.45	30.56	45.31	44.25	36.65	40.7	22.56
Merged-chr11-88998526-3	chr11	88998433	88998633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	-870.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	27.05	15.34	25.67	20.91	25.77	22.89	35.21	36.22	22.03	24.6	25.63	20.36
Merged-chr5-5320353-3	chr5	5320256	5320456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54288.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	26.65	24.65	39.93	24.13	22.91	21.32	20.93	25.63	71.79	36.15	61.81	25.69
Merged-chr3-88142337-3	chr3	88142222	88142422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-50.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	130.02	116.96	102.11	115.03	142.78	162.12	152.13	139.88	201.02	174.23	229.63	148.8
Merged-chr17-14953654-3	chr17	14953552	14953752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024250, intron 7 of 11)	intron (NM_024250, intron 7 of 11)	7608.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	68.65	70.18	70.17	78.43	94.91	83.72	74.07	104.58	92.64	83.35	146.72	50.75
Merged-chr2-145740886-3	chr2	145740791	145740991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	L3|LINE|CR1	39696.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	159.1	159.72	159.73	214.37	215.6	236.43	222.89	232.29	207.31	200.84	267.82	124.99
Merged-chr11-103964231-3	chr11	103964129	103964329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2496.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	37.15	34.21	33.09	34.59	60.96	60.21	51.49	47.07	67.07	47.7	80.9	36.65
Merged-chr2-46371206-3	chr2	46371111	46371311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	674606.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	55.72	46.78	43.35	46.66	72.82	112.26	98.65	73.07	98.15	119.5	103.51	45.42
Merged-chr3-126770228-3	chr3	126770125	126770325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025439, intron 5 of 19)	intron (NM_001025439, intron 5 of 19)	173161.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	26.25	22.89	39.36	24.94	22.5	15.68	28.57	35.3	37.17	38.66	47.23	29.45
Merged-chr4-132922728-3	chr4	132922627	132922827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-176.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	210.38	197.45	201.94	156.05	254.87	323.61	146.49	192.56	288.34	343.44	310.53	187.02
Merged-chr9-94696855-3	chr9	94696743	94696943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	26951.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	151.02	89.8	141.47	148.01	128.05	136.4	125.56	187.09	166.0	142.1	176.87	109.64
Merged-chr7-25712006-3	chr7	25711903	25712103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028771, exon 5 of 5)	3' UTR (NM_028771, exon 5 of 5)	7050.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	40.38	23.64	34.8	32.18	89.59	45.47	75.07	57.65	65.89	62.26	55.78	28.19
Merged-chr17-74431710-3	chr17	74431591	74431791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 8 of 8)	MTE2b|LTR|ERVL-MaLR	27417.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	95.7	92.56	96.41	105.38	126.0	116.65	103.64	103.68	130.4	134.56	174.36	61.71
Merged-chr14-14120942-3	chr14	14120809	14121009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025550)	promoter-TSS (NM_025550)	-5.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	76.32	87.28	66.17	115.03	90.41	109.75	99.98	95.78	85.76	87.87	122.61	58.27
Merged-chr10-96374776-3	chr10	96374670	96374870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	148563.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	104.99	106.65	96.41	73.2	91.64	128.25	65.44	70.85	112.9	87.87	109.04	54.82
Merged-chr10-19008031-3	chr10	19007925	19008125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166402, intron 2 of 7)	intron (NM_001166402, intron 2 of 7)	3938.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	26.25	34.21	35.37	26.55	26.18	54.88	23.25	35.69	68.45	55.23	52.76	34.15
Merged-chr12-70140752-3	chr12	70140645	70140845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-13426.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	47.24	38.23	47.35	49.87	45.82	42.33	33.55	52.26	36.39	31.63	82.41	37.59
Merged-chr6-129472841-3	chr6	129472747	129472947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132130)	promoter-TSS (NR_132130)	-68.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	67.03	41.5	86.71	73.6	51.96	85.92	61.78	85.88	83.2	87.87	73.86	34.46
Merged-chr15-50855174-3	chr15	50855071	50855271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	33878.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	39.98	20.37	30.8	30.57	38.05	26.65	26.24	37.43	36.39	41.17	41.71	18.48
Merged-chr5-64342351-3	chr5	64342263	64342463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112006.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	27.86	25.15	60.47	25.34	57.27	71.18	38.2	56.27	64.12	54.73	84.42	44.17
Merged-chr2-9965793-3	chr2	9965704	9965904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	ORR1A2|LTR|ERVL-MaLR	59655.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	30.69	33.96	34.23	49.47	38.46	27.91	24.25	54.08	41.89	46.19	55.78	41.66
Merged-chr11-85140168-3	chr11	85140068	85140268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029934)	promoter-TSS (NM_001029934)	-213.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	155.46	190.16	171.71	164.9	210.28	266.85	111.28	157.18	240.35	244.53	240.19	153.5
Merged-chr2-153291397-3	chr2	153291286	153291486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008444)	promoter-TSS (NM_008444)	-30.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	44.82	43.26	42.21	39.42	55.23	47.66	23.58	30.5	70.02	73.31	43.21	31.95
Merged-chr3-133310159-3	chr3	133310089	133310289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146141)	promoter-TSS (NM_146141)	79.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	36.75	45.53	53.05	53.09	58.91	59.58	63.78	66.06	73.36	75.82	105.52	70.48
Merged-chr14-56778483-3	chr14	56778407	56778607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360420)	promoter-TSS (NM_001360420)	-189.0	NM_025682	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	63.8	72.94	51.91	101.35	86.32	97.83	90.02	84.59	66.28	77.32	95.97	72.99
Merged-chr10-39413553-3	chr10	39413455	39413655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	L1MB2|LINE|L1	43756.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	44.42	19.37	52.48	49.87	48.27	26.97	46.84	70.37	38.94	20.59	44.22	25.69
Merged-chrX-73716401-3	chrX	73716305	73716505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012060)	promoter-TSS (NM_012060)	-192.0	NM_007435	11666.0	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	148.19	141.11	147.75	141.17	151.78	185.01	156.12	122.38	198.46	217.41	287.42	148.8
Merged-chr11-70475355-3	chr11	70475254	70475454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-15370.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	27.46	24.65	49.63	22.93	35.18	47.66	29.23	29.55	41.11	53.22	44.22	29.76
Merged-chr16-50753813-3	chr16	50753698	50753898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21025.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	57.34	49.05	32.52	36.2	82.64	107.56	47.5	52.63	69.43	66.28	59.29	36.34
Merged-chr1-173973360-1	chr1	173973260	173973460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 3 of 6)	intron (NM_008327, intron 3 of 6)	9484.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	5.65	5.79	10.84	17.29	42.55	36.37	59.13	68.47	0.39	0.0	1.0	1.25
Merged-chr7-43636353-3	chr7	43636249	43636449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	1610.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	20.59	30.43	39.36	28.96	42.96	49.23	41.19	47.61	53.7	55.23	65.32	27.25
Merged-chr12-69168753-4	chr12	69168685	69168885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081406)	promoter-TSS (NM_001081406)	-29.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	23.02	8.8	9.13	14.48	28.64	28.85	9.63	15.48	25.96	46.7	28.14	34.15
Merged-chr6-71452977-3	chr6	71452900	71453100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-12363.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	56.13	36.97	39.93	30.57	66.27	83.1	42.85	45.14	37.37	37.16	40.2	23.81
Merged-chr9-66945989-3	chr9	66945879	66946079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311101)	promoter-TSS (NM_001311101)	-107.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	63.4	61.62	82.15	69.18	71.18	98.46	57.47	69.31	57.63	74.81	97.98	39.78
Merged-chr15-83367408-3	chr15	83367312	83367512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027980)	promoter-TSS (NR_027980)	-115.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	70.26	52.32	38.22	44.64	94.5	77.14	43.51	61.96	61.76	44.69	54.27	37.59
Merged-chr13-111808097-4	chr13	111808025	111808225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	CpG	868.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	17.36	30.94	14.26	10.46	6.95	26.97	22.26	10.26	23.8	21.09	19.6	16.92
Merged-chr3-108389401-3	chr3	108389303	108389503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5565.0	NM_019976	56742.0	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	61.38	52.82	52.48	50.68	76.09	73.06	36.21	64.79	80.84	88.87	70.85	36.97
Merged-chr4-117127173-3	chr4	117127060	117127260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175030, intron 2 of 3)	intron (NM_175030, intron 2 of 3)	347.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	37.15	24.9	33.66	24.13	38.05	32.93	20.59	35.52	38.94	28.12	51.76	34.77
Merged-chr14-51278653-3	chr14	51278551	51278751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22539.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	42.4	47.04	57.62	67.57	42.55	39.82	43.85	34.74	30.09	49.21	53.77	14.41
Merged-chr13-49272445-3	chr13	49272350	49272550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23744.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	30.69	23.64	39.93	37.0	56.87	43.9	59.46	80.47	41.3	25.61	60.3	27.88
Merged-chr2-112493288-3	chr2	112493176	112493376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028844, intron 1 of 5)	CpG	312.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	67.84	50.56	53.05	61.94	59.32	50.17	76.4	82.93	80.25	79.83	86.93	56.7
Merged-chr3-88746025-3	chr3	88745912	88746112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26587.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	23.82	30.69	65.03	39.42	26.18	26.34	14.62	23.47	35.6	31.13	23.11	21.3
Merged-chr7-45715343-3	chr7	45715236	45715436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020011)	promoter-TSS (NM_020011)	-129.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	113.87	138.59	173.99	121.46	129.28	180.93	92.34	154.99	174.86	166.2	184.41	99.62
Merged-chr18-82862340-3	chr18	82862252	82862452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	6455.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	21.0	27.17	26.24	21.72	35.18	37.0	26.91	33.17	53.89	41.17	52.26	22.56
Merged-chr1-173409211-3	chr1	173409112	173409312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11392.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	52.09	52.07	43.93	30.97	86.32	70.24	41.85	63.08	62.55	62.76	71.86	36.34
Merged-chrX-155216430-3	chrX	155216355	155216555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291865)	promoter-TSS (NM_001291865)	-6.0	NM_001291865	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	130.83	119.73	87.28	129.51	97.78	138.6	118.59	115.51	135.12	126.03	178.88	86.15
Merged-chr13-98803882-3	chr13	98803760	98803960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 2 of 25)	intron (NM_172591, intron 2 of 25)	11589.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	20.19	18.11	15.97	50.27	37.64	39.2	37.54	52.15	39.93	44.19	52.26	33.83
Merged-chr5-135551798-3	chr5	135551709	135551909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	29.48	14.59	31.95	17.29	45.41	67.1	30.89	35.36	35.01	43.18	34.17	24.43
Merged-chr11-48901040-3	chr11	48900949	48901149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	1103.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	37.96	36.47	38.22	41.83	28.23	15.68	25.58	18.62	33.04	22.59	22.11	15.35
Merged-chr7-80993905-3	chr7	80993797	80993997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178707, intron 1 of 9)	CpG	213.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	16.96	24.65	16.54	11.26	20.46	20.07	13.95	17.66	30.49	18.58	37.18	17.86
Merged-chr17-39843485-7	chr17	39843348	39843548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	451.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	875.43	1292.85	772.97	808.02	352.24	378.17	289.99	225.56	303.69	321.85	354.25	461.13
Merged-chr4-83486240-7	chr4	83486175	83486375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290527, exon 1 of 11)	5' UTR (NM_001290527, exon 1 of 11)	188.0	NM_001290527	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	13.33	29.93	19.97	25.74	29.46	28.54	49.16	28.63	25.57	31.63	32.66	19.11
Merged-chr19-16330415-3	chr19	16330298	16330498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-15394.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	38.76	45.28	49.63	48.26	30.27	37.63	23.92	38.3	43.86	33.64	48.74	32.27
Merged-chr12-77058846-1	chr12	77058746	77058946	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96598.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	2.42	3.02	8.56	9.25	15.55	4.7	9.63	28.12	5.31	1.0	10.55	5.95
Merged-chr8-105860507-3	chr8	105860424	105860624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-9.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	138.5	152.43	142.61	164.5	186.55	164.94	120.58	188.97	204.95	222.93	225.61	147.86
Merged-chr7-122310385-3	chr7	122310289	122310489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	21264.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	54.11	52.07	77.58	53.09	61.77	52.99	43.85	60.95	56.65	59.75	74.37	33.21
Merged-chr3-107279048-3	chr3	107278960	107279160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026774, exon 1 of 4)	exon (NM_026774, exon 1 of 4)	202.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	47.24	56.59	44.5	57.11	48.68	47.04	50.49	56.07	47.8	32.64	66.83	29.13
Merged-chr13-17805373-3	chr13	17805279	17805479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-282.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	268.52	259.07	260.7	230.06	264.69	321.41	271.05	303.23	292.87	322.35	422.59	213.33
Merged-chr12-99796124-3	chr12	99796030	99796230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87312.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	62.59	74.2	58.76	68.78	72.41	81.84	44.18	77.44	90.08	93.89	87.43	52.0
Merged-chr11-61505082-3	chr11	61504991	61505191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-53.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	39.57	36.97	35.94	22.93	53.18	49.23	20.93	30.5	57.83	61.76	31.66	43.23
Merged-chr5-143527652-3	chr5	143527588	143527788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347530, intron 1 of 6)	CpG	305.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	15.75	29.43	23.96	21.72	24.55	23.2	20.26	15.7	35.4	32.13	29.65	26.63
Merged-chr6-125148665-5	chr6	125148524	125148724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	3400.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	16.15	16.6	18.25	19.71	21.68	24.77	18.27	12.03	16.52	19.08	26.13	18.17
Merged-chr8-70619034-3	chr8	70618923	70619123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	2179.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	210.38	187.89	208.79	206.73	232.78	263.71	206.61	235.74	253.92	253.06	266.82	180.44
Merged-chr6-134065281-3	chr6	134065185	134065385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	29585.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	83.59	74.96	107.82	103.77	100.23	99.09	85.37	99.34	95.0	85.86	119.59	78.32
Merged-chr5-7980821-3	chr5	7980720	7980920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054098, exon 5 of 5)	3' UTR (NM_054098, exon 5 of 5)	20348.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	21.8	14.09	30.23	30.57	40.09	50.17	72.41	78.14	63.73	54.23	96.98	39.47
Merged-chr18-65694960-1	chr18	65694860	65695060	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3308.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.65	1.26	1.71	6.84	4.5	3.45	12.29	8.33	5.9	4.02	7.03	10.34
Merged-chr19-23141081-3	chr19	23140970	23141170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-156.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	141.33	114.45	122.65	122.27	208.23	182.81	157.12	173.02	233.08	285.2	325.61	124.37
Merged-chr11-68871947-3	chr11	68871845	68872045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16608.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	21.0	18.36	37.65	26.14	52.77	48.6	39.86	54.95	48.39	51.72	38.69	35.09
Merged-chr1-85775253-1	chr1	85775153	85775353	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_108086)	promoter-TSS (NR_108086)	-18.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	1.21	0.5	1.71	0.0	17.59	5.96	6.64	10.12	1.38	3.51	10.55	3.76
Merged-chr11-98754205-3	chr11	98754108	98754308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	12423.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	42.8	34.96	41.64	19.71	59.32	64.91	20.93	34.37	72.77	75.82	51.25	22.56
Merged-chr4-59815551-3	chr4	59815338	59815538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9788.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	8.48	16.6	4.56	13.27	16.36	18.5	22.59	8.89	15.93	13.56	12.06	13.78
Merged-chr2-52950376-3	chr2	52950263	52950463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	92495.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	21.8	13.33	38.79	34.19	34.36	32.3	44.51	65.19	34.42	17.07	54.27	17.86
Merged-chr9-21723530-3	chr9	21723398	21723598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010700)	promoter-TSS (NM_010700)	-78.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	97.31	73.95	76.44	72.8	119.05	111.32	53.48	77.44	104.24	90.38	101.0	63.28
Merged-chr11-4258926-3	chr11	4258829	4259029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	1361.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	29.88	26.91	28.52	33.78	37.23	51.74	32.88	32.61	40.71	45.19	39.7	17.86
Merged-chr3-144872196-1	chr3	144872096	144872296	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22894.0	NM_139148	229927.0	Mm.290600	NM_139148	ENSMUSG00000037033	Clca3b	Clca4	chloride channel accessory 3B	protein-coding	0.0	0.5	0.0	0.8	6.55	3.45	13.62	10.99	0.39	3.51	9.55	2.51
Merged-chr2-48717998-3	chr2	48717901	48718101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96108.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	23.42	15.85	33.09	37.4	45.82	31.67	34.21	43.93	60.78	42.18	38.19	22.24
Merged-chrUn_JH584304-14603-1	chrUn_JH584304	14503	14703	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	45086.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	33.44	32.13	43.21	16.92
Merged-chr2-31785245-3	chr2	31785150	31785350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	25077.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	16.96	24.4	18.83	23.73	20.86	25.71	19.93	31.51	30.09	25.61	37.69	29.76
Merged-chr2-163645129-3	chr2	163645042	163645242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	1.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	176.86	178.08	190.53	162.09	188.19	223.89	164.42	151.85	265.73	274.65	270.34	154.75
Merged-chr4-94979094-3	chr4	94978971	94979171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	29.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	145.37	122.24	151.17	130.31	143.19	159.61	104.63	156.51	194.13	169.71	191.45	103.38
Merged-chr2-90504947-3	chr2	90504848	90505048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25774.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	130.83	136.83	157.45	130.71	180.41	233.93	175.05	194.47	191.77	211.39	224.61	93.04
Merged-chr16-31235642-3	chr16	31235571	31235771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34433.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	71.88	43.26	110.1	88.48	100.64	79.96	81.05	116.16	111.33	119.5	164.31	83.64
Merged-chr4-102517223-3	chr4	102517201	102517401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52759.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	26.25	25.4	36.51	49.47	0.0	6.27	0.0	10.26	23.8	13.56	28.14	14.41
Merged-chrUn_JH584304-60409-1	chrUn_JH584304	60309	60509	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003518)	promoter-TSS (NR_003518)	-720.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	69.43	74.81	91.45	53.57
Merged-chrX-123103494-1	chrX	123103394	123103594	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310652)	promoter-TSS (NM_001310652)	-29.0	NM_001310652	73061.0	Mm.292979	NM_028426	ENSMUSG00000079450	Cldn34c1	3110007F17Rik	claudin 34C1	protein-coding	0.0	1.76	0.0	0.0	2.05	2.51	1.33	1.93	28.52	31.63	69.34	20.68
Merged-chr17-74432832-3	chr17	74432769	74432969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	26239.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	50.47	23.64	78.72	48.26	55.23	42.65	67.76	84.03	49.76	26.11	48.24	21.62
Merged-chr10-117953119-3	chr10	117953024	117953224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27665.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	27.46	20.37	24.53	25.34	53.18	49.86	33.88	41.41	49.57	54.73	50.25	38.22
Merged-chr18-77865615-3	chr18	77865513	77865713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-69223.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	18.98	17.86	30.23	28.96	19.64	18.81	17.27	24.03	23.01	23.6	44.72	21.3
Merged-chr5-100498606-3	chr5	100498496	100498696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115010)	promoter-TSS (NM_001115010)	-23.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	71.88	66.91	55.9	43.84	56.87	86.23	45.18	55.12	80.25	86.36	117.58	56.07
Merged-chr16-43655399-3	chr16	43655299	43655499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	8785.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	29.07	20.37	26.24	17.7	16.36	17.87	19.6	23.36	27.73	18.58	25.63	14.72
Merged-chr18-62720135-3	chr18	62720029	62720229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	21258.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	33.11	34.96	53.05	44.64	57.68	56.13	57.47	57.9	85.56	83.85	132.15	59.52
Merged-chr1-191125966-3	chr1	191125875	191126075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	27561.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	49.26	36.72	47.92	54.7	58.5	63.34	55.8	44.24	42.09	55.23	52.76	50.12
Merged-chr3-129901435-3	chr3	129901343	129901543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009811)	promoter-TSS (NM_009811)	28.0	NM_009811	12368.0	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	46.84	48.04	62.18	77.22	87.14	70.24	51.15	113.16	87.33	62.76	138.69	72.99
Merged-chr11-11763527-3	chr11	11763440	11763640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	45422.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	81.16	76.21	107.82	115.83	111.28	120.1	111.94	146.52	114.87	115.99	167.83	80.82
Merged-chr15-61987202-3	chr15	61987112	61987312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177353, intron 1 of 2)	CpG	1871.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	45.63	32.7	30.8	36.6	40.5	36.37	41.19	59.86	31.86	24.6	39.19	17.23
Merged-chr12-44176510-1	chr12	44176410	44176610	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33558.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.0	0.5	0.0	2.01	1.23	2.51	1.66	4.07	35.01	41.67	85.42	27.88
Merged-chr1-138550426-3	chr1	138550340	138550540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 2 of 9)	RLTR26_Mus|LTR|ERVK	69317.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	18.98	15.85	18.83	24.94	25.36	20.7	21.92	32.22	28.32	16.07	27.64	15.66
Merged-chr4-59928591-3	chr4	59928489	59928689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13533.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	33.92	22.89	25.1	29.76	28.64	41.71	19.27	36.22	40.32	43.68	67.84	18.8
Merged-chr15-91172357-3	chr15	91172243	91172443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	19664.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	29.07	15.59	58.76	32.58	44.18	45.47	50.49	79.6	45.63	24.6	30.65	35.09
Merged-chr5-114923115-3	chr5	114923010	114923210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-130.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	67.84	103.38	46.78	41.02	51.55	124.17	52.15	48.59	102.47	125.53	48.74	32.27
Merged-chr17-88127378-3	chr17	88127278	88127478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190356, intron 1 of 1)	L1M4|LINE|L1	1866.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	22.21	15.09	17.11	17.7	20.86	30.42	19.93	30.81	33.04	31.63	32.16	26.63
Merged-chr6-39055258-3	chr6	39055156	39055356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	12330.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	23.82	31.44	34.8	18.1	18.82	32.61	24.91	12.53	21.83	24.6	19.09	11.9
Merged-chr2-167358655-3	chr2	167358572	167358772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-9494.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	28.67	18.86	31.95	24.53	34.77	42.02	48.5	63.48	57.24	35.15	52.76	27.25
Merged-chr19-12795622-3	chr19	12795534	12795734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361971)	promoter-TSS (NM_001361971)	489.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	130.43	147.65	158.59	156.05	160.37	180.3	111.94	134.24	172.5	188.29	239.68	117.79
Merged-chr11-78697523-3	chr11	78697433	78697633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-108.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	147.39	124.25	111.81	109.8	188.6	201.31	101.98	133.82	173.87	154.65	166.32	95.55
Merged-chr16-10412107-3	chr16	10412010	10412210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	172.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	60.97	81.5	56.48	74.81	55.64	87.8	71.75	70.54	56.25	77.32	74.37	47.62
Merged-chr4-116075280-5	chr4	116075160	116075360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	-9.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	24.23	24.9	9.13	25.74	24.96	31.36	22.92	26.94	45.24	54.73	28.64	29.76
Merged-chr14-30593347-3	chr14	30593226	30593426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	16984.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	108.62	96.59	117.51	100.15	138.28	143.93	110.95	109.68	152.83	138.58	170.34	87.09
Merged-chr6-134792692-3	chr6	134792563	134792763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048054)	promoter-TSS (NM_001048054)	-35.0	NM_001048054	70686.0	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	88.43	87.03	92.41	75.61	75.68	112.26	41.85	61.01	159.12	132.56	151.25	78.63
Merged-chr5-103629637-3	chr5	103629548	103629748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029415)	promoter-TSS (NM_029415)	-245.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	45.23	28.17	51.91	69.18	47.46	36.37	48.16	66.98	38.94	43.18	41.2	27.25
Merged-chr2-180725260-3	chr2	180725169	180725369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183161)	promoter-TSS (NM_183161)	-70.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	46.84	35.21	29.66	39.82	53.59	47.35	35.54	65.66	43.07	44.69	54.77	27.57
Merged-chr19-24995036-3	chr19	24994930	24995130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4499.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	41.59	17.86	26.81	33.38	21.27	19.76	9.63	23.64	31.47	36.15	37.69	20.36
Merged-chr2-24311908-3	chr2	24311827	24312027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X7A_LINE|LINE|CR1	20731.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	26.65	20.12	50.2	34.59	39.27	28.54	28.9	41.94	41.3	29.62	54.77	35.09
Merged-chr2-66144065-3	chr2	66143978	66144178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19285.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	35.53	32.45	56.48	63.95	29.05	35.12	33.55	50.05	37.37	28.12	28.64	26.31
Merged-chr1-128103720-2	chr1	128103630	128103830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357573)	promoter-TSS (NM_001357573)	424.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	13.73	21.38	22.82	16.49	21.68	20.7	24.25	18.2	20.85	25.61	28.64	15.66
Merged-chr13-67526187-3	chr13	67526072	67526272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	59.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	106.6	104.13	103.82	129.11	125.19	135.78	77.06	158.16	166.99	136.57	202.0	114.66
Merged-chr14-103945905-3	chr14	103945812	103946012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	81230.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	29.88	13.83	23.96	25.34	44.18	52.37	61.12	74.3	44.65	27.62	45.73	27.57
Merged-chr2-129065969-3	chr2	129065852	129066052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027192)	promoter-TSS (NM_027192)	5.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	23.82	14.84	23.96	16.49	44.18	25.71	19.27	32.83	38.94	28.62	36.68	22.56
Merged-chrX-20932185-3	chrX	20932082	20932282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008823)	promoter-TSS (NM_008823)	-627.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	43.21	24.4	34.8	34.99	65.87	46.72	39.86	55.21	52.52	39.16	57.79	28.51
Merged-chr14-19418193-3	chr14	19418104	19418304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	184383.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	84.39	53.58	82.72	71.19	108.0	70.55	159.77	196.04	85.36	143.1	124.11	180.44
Merged-chr2-60019298-3	chr2	60019211	60019411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	106429.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	29.48	21.63	33.09	32.58	34.77	26.65	28.9	46.09	31.67	29.62	42.21	20.68
Merged-chr9-104281147-3	chr9	104281045	104281245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18215.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	70.66	66.4	98.69	78.43	83.46	88.11	59.79	90.08	93.62	71.3	105.52	68.29
Merged-chr3-63964742-3	chr3	63964630	63964830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331067)	promoter-TSS (NM_001331067)	3.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	159.9	168.52	168.86	173.75	187.37	218.25	172.73	142.71	192.75	240.51	280.89	136.9
Merged-chr8-111562018-3	chr8	111561897	111562097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	23654.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	14.94	18.86	20.54	24.13	28.64	36.06	40.19	35.1	32.85	33.14	31.15	23.49
Merged-chr15-81466199-3	chr15	81466126	81466326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019712)	promoter-TSS (NM_019712)	-90.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	115.08	124.51	94.13	95.32	129.69	168.08	91.35	74.36	165.81	171.22	167.33	81.45
Merged-chr6-98113897-3	chr6	98113806	98114006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122123.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	36.34	31.19	43.93	46.66	33.96	43.59	47.17	50.07	38.35	39.16	55.78	31.33
Merged-chr2-157078182-1	chr2	157078082	157078282	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1083.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	9.69	5.03	4.56	5.23	5.73	4.08	3.32	2.69	11.21	4.52	2.01	6.89
Merged-chr18-35118964-3	chr18	35118883	35119083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009818)	promoter-TSS (NM_009818)	71.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	18.57	38.23	29.09	38.21	26.59	35.75	42.19	33.81	24.59	29.62	43.72	34.46
Merged-chr8-71613641-3	chr8	71613554	71613754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	2630.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	75.91	95.33	100.4	81.24	97.78	113.83	77.06	116.83	121.36	66.28	130.14	78.32
Merged-chr3-103212372-3	chr3	103212304	103212504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	40749.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	22.61	11.32	16.54	6.84	22.5	31.36	21.26	15.0	49.17	41.17	57.28	16.6
Merged-chr10-7792859-3	chr10	7792758	7792958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026141)	promoter-TSS (NM_026141)	-36.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	76.72	50.81	57.62	49.47	54.82	61.15	20.26	46.32	79.66	83.35	65.32	57.64
Merged-chr12-54795723-3	chr12	54795624	54795824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026998)	promoter-TSS (NM_026998)	-62.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	30.28	21.63	46.21	33.78	32.73	30.73	28.57	42.87	52.71	34.14	48.24	28.51
Merged-chr17-84117004-3	chr17	84116899	84117099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38339.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	48.05	46.53	42.78	47.06	65.87	78.39	47.83	56.22	52.12	44.19	54.27	41.98
Merged-chr11-87737441-3	chr11	87737342	87737542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-109.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	100.14	119.48	130.63	113.02	108.41	166.51	90.02	70.77	142.6	129.54	154.26	83.64
Merged-chr1-171017935-3	chr1	171017776	171017976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1050.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	23.42	20.12	35.37	18.9	25.77	33.55	34.88	38.97	41.5	40.67	31.15	41.35
Merged-chr8-4677912-3	chr8	4677821	4678021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	64751.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	170.81	205.0	197.95	207.94	172.64	216.99	167.75	263.38	324.93	307.29	418.57	207.07
Merged-chr13-97198377-3	chr13	97198286	97198486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010422)	promoter-TSS (NM_010422)	-29.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	107.81	85.02	102.11	130.71	101.87	113.51	79.72	111.76	101.1	110.97	180.39	67.98
Merged-chr5-105011792-3	chr5	105011677	105011877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29060.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	56.13	50.31	53.05	59.12	77.32	49.86	50.82	53.24	54.09	51.72	72.86	29.45
Merged-chr15-81021593-3	chr15	81021505	81021705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43840.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	75.11	65.15	88.42	59.93	85.09	97.21	74.41	74.8	76.31	60.75	94.97	41.66
Merged-chr12-76549509-1	chr12	76549409	76549609	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	L2c|LINE|L2	-1584.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	2.42	4.28	8.56	7.24	4.91	5.96	8.97	14.27	1.38	1.51	4.02	5.95
Merged-chr8-35587812-3	chr8	35587708	35587908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081279)	promoter-TSS (NM_001081279)	10.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	37.55	24.4	34.23	23.73	30.68	28.22	33.55	41.3	43.07	39.16	57.79	23.49
Merged-chr12-55415919-1	chr12	55415819	55416019	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310583, intron 6 of 6)	PB1D10|SINE|Alu	17094.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.63	2.52	6.28	4.83	11.05	18.5	15.94	16.82	8.65	6.53	14.07	5.33
Merged-chr8-46470865-3	chr8	46470779	46470979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-158.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	175.65	188.65	179.69	199.89	260.19	268.1	202.62	223.82	270.45	316.33	420.08	159.45
Merged-chr19-3882456-3	chr19	3882346	3882546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	22784.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	28.67	19.62	29.66	27.35	21.27	30.42	19.6	22.21	40.91	20.08	25.63	15.98
Merged-chr16-14317380-3	chr16	14317281	14317481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025345)	promoter-TSS (NM_025345)	-49.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	217.65	210.03	286.37	216.38	269.6	241.45	203.95	289.66	249.2	276.16	351.24	152.56
Merged-chr5-141056218-3	chr5	141056143	141056343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-55647.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	47.24	52.07	49.63	62.34	55.23	55.19	39.53	47.3	51.93	53.73	63.31	40.1
Merged-chr11-51967608-3	chr11	51967509	51967709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029976)	promoter-TSS (NM_029976)	-22.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	58.95	52.07	49.06	27.75	63.41	43.59	27.9	47.83	72.97	62.26	67.84	39.16
Merged-chr5-67846527-3	chr5	67846416	67846616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	915.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	20.19	21.38	23.39	16.49	23.32	32.61	22.26	26.22	35.6	29.62	44.22	25.69
Merged-chr13-111930090-3	chr13	111929996	111930196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62160.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	32.71	41.5	47.92	30.97	26.18	31.67	11.29	43.32	42.09	23.6	35.17	28.82
Merged-chr16-23279979-3	chr16	23279877	23280077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-10493.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	79.14	50.81	86.14	90.09	85.09	62.4	70.09	80.44	67.27	58.24	93.46	57.01
Merged-chr2-167007058-3	chr2	167006973	167007173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8240.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	86.01	60.87	77.01	37.4	81.0	87.8	53.81	64.07	103.26	69.29	102.51	65.47
Merged-chr1-60566836-3	chr1	60566730	60566930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045513)	promoter-TSS (NM_001045513)	-65.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	85.2	69.92	66.74	74.41	83.05	115.39	62.78	100.37	81.82	86.36	144.71	42.92
Merged-chr4-126148446-3	chr4	126148366	126148566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172145, exon 1 of 3)	5' UTR (NM_172145, exon 1 of 3)	463.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	20.59	22.64	27.95	26.14	33.96	25.71	26.57	25.29	31.08	25.11	40.2	23.18
Merged-chr8-119838872-1	chr8	119838772	119838972	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1707.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	18.57	22.64	23.39	23.33	20.46	24.46	18.6	20.1	35.8	26.11	27.64	29.13
Merged-chr2-58567263-3	chr2	58567156	58567356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	-78.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	46.84	22.89	42.21	57.11	45.82	45.47	27.9	50.55	50.55	42.68	92.96	31.95
Merged-chr2-102987147-3	chr2	102987062	102987262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85497.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	69.86	51.56	41.07	37.81	66.27	84.98	62.12	52.4	55.07	56.24	44.22	17.54
Merged-chr5-114567281-3	chr5	114567176	114567376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-975.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	45.63	47.79	37.65	48.67	76.09	102.22	64.44	61.65	71.99	91.38	74.37	57.95
Merged-chr2-120731545-3	chr2	120731467	120731667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026891)	promoter-TSS (NM_026891)	-50.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	62.99	58.1	51.34	54.3	75.68	80.59	46.5	69.31	78.68	78.83	126.63	51.06
Merged-chr14-25841780-3	chr14	25841684	25841884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	-371.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	29.88	16.35	15.4	17.7	24.14	43.9	18.6	39.56	39.34	17.07	29.65	16.92
Merged-chr3-97775060-3	chr3	97774972	97775172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7058.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	86.41	62.13	69.6	64.35	69.96	80.27	37.2	49.6	77.1	103.94	88.44	51.06
Merged-chr13-110394411-3	chr13	110394296	110394496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-648.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	34.73	30.43	35.37	48.67	35.59	40.14	22.59	39.45	56.65	73.81	76.88	43.86
Merged-chr1-152536675-3	chr1	152536557	152536757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	88560.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	126.79	174.06	179.12	181.39	185.73	219.19	210.26	246.39	208.1	179.75	244.71	145.67
Merged-chr8-3646022-3	chr8	3645919	3646119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9751.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	34.32	24.15	39.36	23.73	44.59	40.45	38.2	63.42	46.22	42.18	54.77	29.45
Merged-chr13-40921493-3	chr13	40921397	40921597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3863.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	93.28	57.1	89.56	98.54	79.37	131.39	86.36	111.81	101.49	96.91	117.58	63.59
Merged-chr8-119425830-3	chr8	119425707	119425907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11355.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	73.09	60.87	75.87	87.28	79.37	83.1	68.76	93.17	90.28	70.29	91.45	44.48
Merged-chr2-29624134-3	chr2	29624029	29624229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4409.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	38.76	31.19	34.23	26.95	38.86	34.81	25.58	36.84	50.94	44.19	59.8	27.88
Merged-chr7-83859918-3	chr7	83859838	83860038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24403.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	38.76	35.97	44.5	55.1	76.91	52.37	85.37	80.44	52.32	44.19	107.03	41.98
Merged-chr8-70003259-3	chr8	70003170	70003370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6886.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	65.41	58.86	81.0	58.32	74.05	75.88	49.16	62.3	124.7	99.42	91.45	51.69
Merged-chr9-56094961-2	chr9	56094855	56095055	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	4979.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.81	1.01	0.57	0.0	24.14	32.61	15.94	24.34	29.5	31.63	48.74	14.41
Merged-chr13-60738114-3	chr13	60738006	60738206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	48258.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	123.97	102.87	124.36	120.26	108.82	164.0	105.3	151.54	131.78	152.14	192.45	98.37
Merged-chr11-4544534-3	chr11	4544465	4544665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	B2_Mm2|SINE|B2	50250.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	37.15	23.9	32.52	34.59	29.46	38.57	20.93	30.81	37.96	30.63	38.19	34.15
Merged-chr3-96300855-3	chr3	96300755	96300955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6886.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	63.8	66.4	100.97	136.35	94.5	90.94	91.01	125.61	111.92	112.47	159.79	86.77
Merged-chr19-32485904-3	chr19	32485802	32486002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010799, exon 1 of 5)	5' UTR (NM_010799, exon 1 of 5)	133.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	34.73	33.7	42.78	39.82	62.59	52.37	31.89	45.31	50.75	56.24	44.72	28.51
Merged-chr2-38998129-3	chr2	38998037	38998237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-172.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	74.7	97.84	106.1	107.39	100.64	124.17	160.11	131.02	109.16	130.55	118.08	115.28
Merged-chr10-77978569-3	chr10	77978488	77978688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026431)	promoter-TSS (NM_026431)	-62.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	186.15	136.08	166.57	140.77	207.82	207.27	150.81	191.72	193.54	225.95	237.67	133.45
Merged-chr2-128374140-3	chr2	128374100	128374300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55151.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	52.09	51.31	63.89	47.86	57.68	80.27	53.48	56.72	68.25	72.81	63.82	35.4
Merged-chr17-83705803-3	chr17	83705685	83705885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171053)	promoter-TSS (NM_001171053)	-378.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	23.42	17.61	19.97	25.34	44.59	11.6	20.26	30.39	29.9	26.61	43.72	26.31
Merged-chr11-40755342-3	chr11	40755228	40755428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	160.71	152.17	185.4	223.22	193.51	227.34	213.25	280.26	236.81	187.79	297.47	140.03
Merged-chr7-102267475-6	chr7	102267336	102267536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-388.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	41.19	48.04	36.51	67.97	52.37	45.15	57.47	35.64	40.52	68.29	50.75	54.2
Merged-chr5-143470959-3	chr5	143470846	143471046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	6453.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	50.88	46.78	75.87	46.66	54.41	43.59	37.54	57.87	58.61	61.76	58.79	42.92
Merged-chr6-71831269-3	chr6	71831165	71831365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253681)	promoter-TSS (NM_001253681)	-55.0	NM_001362134	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	104.99	113.69	131.78	118.65	140.32	200.69	99.98	162.67	149.48	142.1	233.15	109.02
Merged-chr11-98937613-3	chr11	98937504	98937704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-92.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	34.73	43.01	49.06	49.47	61.77	65.22	31.89	44.1	75.33	70.29	90.45	55.13
Merged-chr6-124829491-3	chr6	124829387	124829587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-3.0	NM_013700	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	146.98	146.39	155.73	180.19	159.14	240.2	117.92	177.51	235.44	269.63	326.61	172.3
Merged-chr4-41713456-3	chr4	41713346	41713546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	71.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	16.15	19.12	21.68	15.28	22.09	34.18	29.9	22.18	25.18	26.11	22.61	21.3
Merged-chr1-183350037-3	chr1	183349952	183350152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177389, intron 6 of 26)	intron (NM_177389, intron 6 of 26)	19513.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	29.88	37.23	27.95	25.74	20.86	47.35	17.61	27.39	35.21	43.68	39.7	26.63
Merged-chrX-166440709-3	chrX	166440619	166440819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025432)	promoter-TSS (NM_025432)	-15.0	NM_177429	237222.0	Mm.247480	NM_177429	ENSMUSG00000040586	Ofd1	Cxorf5|DXGgc7e|ORF2	OFD1, centriole and centriolar satellite protein	protein-coding	54.51	33.45	32.52	43.44	46.64	68.36	21.59	51.03	72.58	81.84	85.92	41.04
Merged-chr11-98776033-3	chr11	98775926	98776126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-649.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	65.41	64.89	61.04	34.59	58.09	94.39	48.83	54.59	64.91	73.81	83.91	41.35
Merged-chr4-149773671-2	chr4	149773567	149773767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027460, intron 1 of 6)	CpG	600.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	14.94	25.4	18.83	28.15	11.45	22.89	18.6	17.66	32.26	27.11	24.12	20.05
Merged-chr6-87496342-3	chr6	87496274	87496474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175476)	promoter-TSS (NM_175476)	-47.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	29.88	39.49	37.65	44.24	34.36	44.84	26.91	39.84	63.14	29.12	35.68	33.52
Merged-chr5-53509740-3	chr5	53509624	53509824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46055.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	132.44	142.36	147.75	110.6	81.82	168.7	101.64	93.67	166.79	169.21	187.43	80.82
Merged-chr5-69592168-3	chr5	69592079	69592279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359239, intron 1 of 6)	CpG	125.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	27.05	20.12	19.4	27.35	24.14	22.89	45.18	39.31	15.34	18.08	33.16	30.7
Merged-chr2-45089685-3	chr2	45089597	45089797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	20580.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	103.78	113.94	81.0	61.94	116.59	156.79	75.4	77.5	138.67	177.75	155.77	72.99
Merged-chr12-111574439-3	chr12	111574349	111574549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	-47.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	81.97	82.5	99.26	87.28	116.59	114.77	55.14	92.83	130.8	122.01	115.07	71.11
Merged-chr19-12012437-3	chr19	12012353	12012553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24287.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	72.68	44.27	49.63	33.78	49.5	59.89	32.22	40.82	62.55	45.69	52.76	34.77
Merged-chr15-55380212-3	chr15	55380103	55380303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 10 of 47)	intron (NM_181277, intron 10 of 47)	72453.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	66.63	65.4	100.97	84.06	81.82	99.09	54.48	100.93	89.89	112.97	135.67	55.76
Merged-chr13-30628836-3	chr13	30628750	30628950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	13807.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	20.19	31.44	49.06	40.22	51.14	46.1	51.82	43.65	47.6	38.16	56.28	31.01
Merged-chrX-122397387-1	chrX	122397287	122397487	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138742)	promoter-TSS (NM_138742)	-2.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	7.27	2.26	5.7	8.04	36.41	40.14	33.88	49.79	5.31	4.52	13.06	5.01
Merged-chr8-126849926-5	chr8	126849796	126849996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	876.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	80.36	101.87	71.31	84.46	83.05	110.06	115.93	83.55	98.54	162.18	110.55	87.4
Merged-chr11-108343969-3	chr11	108343885	108344085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011101)	promoter-TSS (NM_011101)	-97.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	37.55	38.23	37.08	43.44	46.23	39.51	24.91	34.51	45.83	72.81	50.75	40.1
Merged-chr18-7869056-3	chr18	7868886	7869086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	154.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	77.53	77.72	67.31	70.38	65.87	67.73	88.36	64.57	71.4	88.87	69.34	59.52
Merged-chr7-43642492-1	chr7	43642392	43642592	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 4 of 5)	B1_Mus1|SINE|Alu	7753.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	10.9	25.4	19.97	13.67	14.73	29.79	16.28	8.05	24.39	36.65	35.68	24.43
Merged-chr14-45220629-4	chr14	45220432	45220632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	815.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	13.73	10.56	11.98	14.08	16.36	15.68	9.97	9.22	16.92	19.08	33.67	23.18
Merged-chr7-27474672-3	chr7	27474541	27474741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	801.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	118.31	92.06	122.08	132.73	138.69	146.44	115.6	135.31	178.79	159.17	206.52	116.54
Merged-chr2-71581000-5	chr2	71580897	71581097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-34243.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	15.75	19.37	31.38	24.94	19.64	18.5	18.6	31.57	13.77	16.57	34.67	22.56
Merged-chr6-46450556-3	chr6	46450446	46450646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 12 of 23)	B3|SINE|B2	-793850.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	38.36	18.11	55.9	78.03	73.64	38.88	51.82	109.91	53.5	52.22	97.98	44.17
Merged-chr16-96083069-2	chr16	96082957	96083157	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-629.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	34.73	32.2	56.48	23.33	47.46	79.65	33.88	31.54	68.25	54.23	71.86	29.76
Merged-chr3-57673722-3	chr3	57673585	57673785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033349, intron 2 of 3)	intron (NM_001033349, intron 2 of 3)	18852.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	36.34	31.44	50.2	64.35	35.59	21.95	43.85	54.14	41.11	28.12	35.68	26.31
Merged-chr15-25606741-3	chr15	25606636	25606836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15814.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	41.19	47.04	56.48	54.3	40.09	42.33	36.21	46.65	43.86	43.68	64.32	25.37
Merged-chr2-44927204-3	chr2	44927091	44927291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-65569.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	154.65	159.72	167.14	143.59	220.92	243.33	180.04	150.25	231.7	288.21	345.21	120.92
Merged-chr17-35897413-3	chr17	35897315	35897515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033630)	promoter-TSS (NM_001033630)	-37.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	35.94	18.86	37.08	15.28	23.32	39.2	19.93	21.7	46.22	34.14	35.68	23.81
Merged-chr12-40555246-3	chr12	40555158	40555358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	109205.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	44.82	29.93	55.9	38.61	47.87	42.96	48.16	57.48	60.19	50.21	44.72	20.36
Merged-chr17-37246876-3	chr17	37246761	37246961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14493.0	NM_146512	258505.0	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	26.65	30.94	34.23	20.11	37.64	34.18	11.96	22.26	60.78	40.17	57.79	33.83
Merged-chr15-100732804-3	chr15	100732706	100732906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045781)	promoter-TSS (NR_045781)	-69.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	93.68	73.95	77.58	58.32	81.82	97.83	60.46	71.64	77.1	67.28	111.05	45.74
Merged-chr4-48044339-2	chr4	48044235	48044435	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-970.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.48	6.04	7.99	8.45	20.05	13.8	9.63	29.58	19.28	23.1	36.18	19.74
Merged-chr4-21767156-3	chr4	21767040	21767240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029840)	promoter-TSS (NM_029840)	71.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	18.17	29.68	30.8	23.33	29.86	38.26	19.6	29.02	37.37	30.13	34.17	16.92
Merged-chr9-7825028-3	chr9	7824933	7825133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007465, intron 4 of 7)	intron (NM_007465, intron 4 of 7)	11773.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	30.69	49.05	67.31	37.81	29.05	46.72	30.23	35.13	58.42	57.74	77.88	44.17
Merged-chr13-34691279-3	chr13	34691162	34691362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38339.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	72.68	81.75	78.15	64.75	81.0	129.51	73.41	59.16	79.46	83.85	92.46	35.71
Merged-chr17-45433711-3	chr17	45433621	45433821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152810)	promoter-TSS (NM_152810)	-14.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	67.43	64.89	49.63	47.86	56.87	73.69	36.54	33.53	90.28	78.83	98.99	43.54
Merged-chr2-14234235-3	chr2	14234119	14234319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	LTR16C|LTR|ERVL	4805.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	35.94	20.88	26.24	20.51	45.0	57.07	18.27	40.85	51.53	54.23	63.82	23.18
Merged-chr2-167093689-3	chr2	167093595	167093795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28402.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	79.14	58.86	49.06	64.35	99.82	88.43	57.13	55.46	68.84	64.27	94.47	56.07
Merged-chr12-84285324-3	chr12	84285255	84285455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029880)	promoter-TSS (NM_029880)	59.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	87.22	94.32	91.27	113.42	133.37	143.93	61.45	90.11	127.65	131.05	128.13	95.86
Merged-chr9-57148285-3	chr9	57148158	57148358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357409)	promoter-TSS (NM_001357409)	47.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	149.0	125.26	135.2	131.12	137.46	193.47	123.57	127.99	200.43	195.32	209.54	123.74
Merged-chr1-135631655-3	chr1	135631533	135631733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33857.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	45.23	32.2	44.5	62.74	93.28	96.58	61.45	82.49	88.9	69.79	97.48	56.39
Merged-chr5-143235146-3	chr5	143235059	143235259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289590)	promoter-TSS (NM_001289590)	-4.0	NM_001289589	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	34.32	39.49	54.76	37.81	41.73	54.88	19.93	43.51	37.96	51.72	39.19	36.34
Merged-chr4-54527883-2	chr4	54527783	54527983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-420062.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	62.18	48.8	79.29	84.46	107.59	139.85	144.16	171.59	1.38	8.03	6.53	5.95
Merged-chrX-74270745-3	chrX	74270684	74270884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052835)	promoter-TSS (NM_052835)	-32.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	70.66	63.39	50.2	69.18	81.41	99.72	43.85	47.38	102.67	119.0	113.56	53.57
Merged-chr13-21721930-3	chr13	21721799	21721999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-145.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	101.76	96.34	126.64	129.11	131.32	94.39	139.18	134.78	122.73	141.09	138.18	81.14
Merged-chr18-38397054-3	chr18	38396966	38397166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21841.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	31.09	17.86	54.76	48.67	24.14	35.43	40.52	62.27	37.57	27.62	52.76	23.18
Merged-chr4-9643706-3	chr4	9643616	9643816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	1.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	31.5	17.1	33.09	19.31	50.73	34.18	31.22	54.03	56.84	21.09	74.37	40.1
Merged-chr2-129893572-4	chr2	129893514	129893714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92155.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	14.94	12.32	34.23	26.95	22.5	22.58	25.58	26.55	21.44	31.63	29.65	28.51
Merged-chr8-80325423-3	chr8	80325344	80325544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168601.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	41.19	40.75	42.78	58.72	79.78	40.45	65.77	67.35	34.22	52.72	60.3	37.28
Merged-chr13-52062104-3	chr13	52061998	52062198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-34643.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	28.27	24.65	32.52	18.5	41.32	52.37	27.57	26.27	45.63	47.2	62.31	19.74
Merged-chr11-29374292-3	chr11	29374210	29374410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_176841, exon 1 of 32)	5' UTR (NM_176841, exon 1 of 32)	138.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	44.82	40.24	34.8	31.77	50.73	50.17	38.53	35.36	46.03	49.21	54.77	19.11
Merged-chr1-131975777-3	chr1	131975659	131975859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	5150.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	77.53	31.19	75.87	64.35	105.96	63.34	110.95	127.74	86.54	45.69	124.11	65.16
Merged-chr9-22389267-3	chr9	22389093	22389293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	13.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	45.63	37.48	37.08	37.81	39.68	38.26	38.53	33.9	52.12	30.13	54.77	39.47
Merged-chr6-97479045-3	chr6	97478964	97479164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	8756.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	55.72	29.18	63.32	85.27	63.0	91.88	108.62	84.17	95.0	97.41	143.71	78.94
Merged-chr12-69538109-3	chr12	69537948	69538148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44980.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	19.38	26.66	14.83	14.08	37.23	86.23	43.51	30.5	41.11	62.76	40.2	14.1
Merged-chr9-70657276-3	chr9	70657190	70657390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-116.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	164.75	148.9	160.3	166.91	157.91	240.51	128.88	156.17	222.85	210.38	225.11	108.39
Merged-chr2-73553054-3	chr2	73552952	73553152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23565.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	28.27	22.89	22.82	19.71	52.77	57.38	30.56	33.5	47.21	49.71	50.75	22.56
Merged-chr7-118704427-2	chr7	118704360	118704560	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1278.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	2.42	4.78	3.42	8.04	7.77	6.27	14.95	8.33	37.96	39.67	44.22	26.94
Merged-chr1-149954161-3	chr1	149954067	149954267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	7123.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	54.11	28.42	40.5	52.29	37.23	29.48	35.87	49.68	63.73	47.2	57.79	27.25
Merged-chr17-48347470-3	chr17	48347393	48347593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031254, intron 1 of 4)	intron (NM_031254, intron 1 of 4)	1092.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	34.73	20.37	51.34	49.47	37.23	34.81	32.88	52.01	52.52	62.26	51.76	36.65
Merged-chr7-127477982-3	chr7	127477858	127478058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6344.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	235.82	200.22	235.6	189.03	223.37	278.14	199.63	216.2	301.72	259.09	380.38	186.39
Merged-chr1-53851545-3	chr1	53851469	53851669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	2145.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	67.03	64.89	58.76	72.8	76.5	90.94	45.18	70.6	49.37	60.25	98.49	40.1
Merged-chr4-143162233-3	chr4	143162125	143162325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256380, intron 5 of 7)	CpG-10608	-26063.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	206.34	171.29	180.83	172.95	178.37	227.03	150.14	168.73	227.96	248.04	240.69	142.85
Merged-chr8-84104967-3	chr8	84104871	84105071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357322)	promoter-TSS (NM_001357322)	-174.0	NM_172502	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	150.21	181.6	196.81	175.76	204.14	270.61	140.18	187.21	231.5	228.46	203.0	150.99
Merged-chr2-140794206-5	chr2	140794153	140794353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	RMER17C2|LTR|ERVK	-122777.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	11.71	13.33	14.83	13.67	29.05	25.09	30.56	18.73	10.03	24.1	15.58	6.58
Merged-chr5-136962168-3	chr5	136962080	136962280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025562, exon 1 of 5)	5' UTR (NM_025562, exon 1 of 5)	103.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	37.55	38.74	56.48	49.47	48.27	42.02	49.83	31.23	31.86	40.17	40.2	30.07
Merged-chr7-143757109-3	chr7	143757022	143757222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9871.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	18.57	24.15	20.54	30.97	12.68	30.42	30.23	22.37	27.73	22.09	32.66	27.88
Merged-chr9-100452688-3	chr9	100452576	100452776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33797.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	37.55	40.75	45.07	40.22	51.96	56.13	39.53	68.86	31.86	15.57	30.15	22.24
Merged-chr10-117831073-3	chr10	117830990	117831190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14884.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	47.24	29.43	25.1	32.98	44.18	31.36	26.57	36.81	40.91	30.63	44.72	22.56
Merged-chr16-45644668-1	chr16	45644568	45644768	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 2 of 5)	intron (NM_145389, intron 2 of 5)	9450.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	0.0	2.01	0.0	0.8	0.0	1.25	2.33	0.67	145.75	163.69	217.07	70.17
Merged-chr2-22749973-3	chr2	22749893	22750093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24334.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	33.92	38.23	25.1	45.85	46.23	45.78	28.9	46.88	52.12	43.68	77.38	41.66
Merged-chr8-85036838-3	chr8	85036758	85036958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122843)	promoter-TSS (NM_001122843)	-57.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	89.24	72.94	73.59	63.15	49.09	70.24	39.86	61.23	91.46	115.48	89.94	66.41
Merged-chr5-64677173-3	chr5	64677069	64677269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66470.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	44.01	33.96	41.07	34.59	45.41	50.8	24.25	36.76	32.45	40.17	44.72	33.52
Merged-chr11-45752987-3	chr11	45752907	45753107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55076.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	38.76	34.46	54.76	42.23	62.59	65.54	39.86	40.99	85.56	53.22	49.24	38.85
Merged-chr11-53567368-3	chr11	53567266	53567466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290805)	promoter-TSS (NM_001290805)	-3.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	48.46	44.52	49.63	40.22	57.27	61.46	42.19	72.73	71.99	95.4	63.31	46.05
Merged-chr3-10439611-3	chr3	10439517	10439717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127191, intron 1 of 6)	CpG	513.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	20.19	20.37	17.11	21.72	20.86	13.48	9.3	17.64	28.32	17.07	31.66	20.36
Merged-chr18-46447798-3	chr18	46447690	46447890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18026.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	165.15	168.52	170.57	163.7	201.28	240.51	205.28	181.94	208.1	207.37	241.19	128.44
Merged-chr4-132802426-3	chr4	132802338	132802538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6074.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	74.7	55.59	72.45	41.43	48.27	67.73	42.52	45.9	73.36	60.75	48.24	28.82
Merged-chr18-70436009-1	chr18	70435909	70436109	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-36445.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	10.5	12.83	15.97	18.5	9.82	11.29	16.94	10.96	28.32	23.1	48.24	21.93
Merged-chr8-68247159-1	chr8	68247059	68247259	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29369.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	2.02	2.52	1.14	2.01	6.55	10.66	4.32	2.24	25.37	20.59	11.56	5.33
Merged-chr11-62576679-3	chr11	62576553	62576753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011706, intron 2 of 15)	intron (NM_011706, intron 2 of 15)	2167.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	27.05	27.17	32.52	26.14	39.68	23.52	22.59	26.16	26.36	25.11	24.62	17.86
Merged-chr5-149678365-3	chr5	149678260	149678460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081204, exon 1 of 15)	exon (NM_001081204, exon 1 of 15)	103.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	96.1	98.85	74.16	74.41	69.55	75.26	110.61	70.74	106.21	122.51	109.54	63.28
Merged-chr17-69222544-3	chr17	69222457	69222657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	54649.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	56.94	69.42	82.15	82.85	96.14	93.76	65.77	86.75	99.33	105.44	108.03	53.57
Merged-chr6-125008952-3	chr6	125008880	125009080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175557)	promoter-TSS (NM_175557)	-258.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	144.56	156.7	148.89	154.44	151.78	172.47	124.9	140.08	193.15	225.45	246.72	121.86
Merged-chr7-16452831-3	chr7	16452756	16452956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026938)	promoter-TSS (NM_026938)	77.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	57.34	87.03	105.53	113.82	115.37	105.99	93.34	139.4	102.08	82.35	161.8	72.99
Merged-chr4-129556642-3	chr4	129556541	129556741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010693, intron 5 of 11)	intron (NM_010693, intron 5 of 11)	1170.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	18.57	16.85	19.97	18.5	22.91	19.44	10.63	18.48	20.65	32.64	17.08	16.92
Merged-chr7-46710608-3	chr7	46710482	46710682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030233)	promoter-TSS (NM_030233)	69.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	18.98	29.68	18.25	30.16	32.73	39.82	33.88	26.41	27.34	37.66	23.11	26.31
Merged-chr16-27349506-3	chr16	27349410	27349610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198112, intron 4 of 4)	intron (NM_198112, intron 4 of 4)	20729.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	41.59	49.05	50.2	41.83	42.14	61.77	23.58	31.23	74.54	46.19	53.26	33.52
Merged-chr2-165405569-3	chr2	165405476	165405676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054055, exon 13 of 13)	3' UTR (NM_054055, exon 13 of 13)	-5182.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	43.61	35.97	49.63	44.24	62.18	70.24	26.91	44.27	64.12	55.23	71.86	27.57
Merged-chr10-80935542-3	chr10	80935462	80935662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5471.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	75.11	74.96	82.72	24.53	75.68	95.01	43.18	41.55	96.57	102.43	109.54	29.45
Merged-chr5-16552797-3	chr5	16552706	16552906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-689.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	164.75	143.87	220.2	216.38	177.55	210.72	196.31	270.06	255.69	206.87	349.73	194.85
Merged-chr10-79097693-3	chr10	79097582	79097782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359717)	promoter-TSS (NM_001359717)	-82.0	NM_001004362	72128.0	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	184.13	175.06	208.79	215.18	174.28	221.7	166.42	250.74	229.93	220.93	266.82	114.97
Merged-chr8-122934152-3	chr8	122934049	122934249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	MT2B|LTR|ERVL	85775.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	70.26	60.37	68.45	89.29	78.14	94.7	52.48	51.36	42.29	60.75	54.27	40.41
Merged-chr11-120633646-3	chr11	120633552	120633752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-105.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	77.12	57.85	62.18	55.91	66.68	100.66	29.9	47.8	84.58	70.8	57.28	40.1
Merged-chr14-25694067-3	chr14	25693962	25694162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-108.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	100.55	124.51	116.37	96.93	113.32	133.58	109.28	139.12	114.87	148.12	180.39	93.98
Merged-chr17-34122373-5	chr17	34122202	34122402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	305.0	NM_001204973	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	13.73	26.66	15.97	21.72	22.09	26.65	15.61	14.1	43.07	33.64	40.2	31.95
Merged-chr11-9011147-3	chr11	9011070	9011270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303532)	promoter-TSS (NM_001303532)	21.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	19.38	20.63	15.4	27.35	28.23	32.61	19.27	21.62	38.35	33.14	41.2	27.88
Merged-chr14-8093591-3	chr14	8093495	8093695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4616.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	151.42	142.11	146.04	163.29	196.37	196.3	157.12	175.18	194.52	178.75	213.56	124.68
Merged-chr10-57746473-3	chr10	57746374	57746574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38449.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	73.49	55.34	72.45	102.96	104.32	138.29	77.4	110.89	110.34	125.53	107.03	57.95
Merged-chr2-25557782-3	chr2	25557680	25557880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-120.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	110.24	90.8	122.65	127.5	133.78	153.34	74.07	136.21	145.16	168.71	180.89	92.73
Merged-chr5-105496364-3	chr5	105496258	105496458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-23113.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	54.92	35.97	71.88	62.34	68.73	60.52	51.15	62.55	37.17	45.19	48.24	18.8
Merged-chr19-8984577-3	chr19	8984484	8984684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4700.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	127.6	112.43	74.73	81.65	123.96	154.28	50.49	59.19	167.97	176.74	118.08	71.42
Merged-chr2-12301899-3	chr2	12301763	12301963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138462)	promoter-TSS (NR_138462)	81.0	NR_138462	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	14.54	23.64	11.41	22.52	19.23	19.13	30.23	20.02	19.28	18.08	21.1	12.84
Merged-chr18-36720119-3	chr18	36720016	36720216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6699.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	69.45	45.78	91.27	71.19	91.64	76.51	83.04	94.6	61.37	62.76	62.31	35.09
Merged-chr10-117746396-3	chr10	117746299	117746499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-41.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	106.6	76.97	94.13	95.32	101.87	94.7	80.05	100.68	146.34	133.06	148.23	68.92
Merged-chr14-47276958-3	chr14	47276875	47277075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172598)	promoter-TSS (NM_172598)	-118.0	NM_172598	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	90.45	69.92	51.34	65.16	67.5	97.52	66.1	72.73	106.21	111.47	104.52	72.68
Merged-chr8-33385633-3	chr8	33385542	33385742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-115.0	NM_011721	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	58.95	79.99	66.74	109.0	103.5	99.72	118.92	109.15	107.0	104.94	146.22	62.97
Merged-chr16-87661286-3	chr16	87661193	87661393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37661.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	156.67	170.79	161.44	139.16	173.05	251.17	175.05	215.44	268.09	251.55	200.99	109.64
Merged-chr3-36853396-1	chr3	36853296	36853496	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	-9710.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	19.64	21.01	20.93	8.33	4.33	7.03	4.52	2.51
Merged-chr2-32424148-3	chr2	32424037	32424237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290558)	promoter-TSS (NM_001290558)	-71.0	NM_001290558	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	38.36	26.41	36.51	35.39	40.09	43.9	22.59	40.37	50.55	43.68	73.36	31.01
Merged-chr3-89960640-3	chr3	89960538	89960738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081182, intron 2 of 27)	CpG	2694.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	65.01	40.24	69.03	49.07	47.87	34.81	17.61	45.93	80.64	64.77	110.04	44.17
Merged-chr19-61265510-3	chr19	61265418	61265618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37100.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	64.61	79.23	98.69	103.37	113.73	99.09	60.46	102.79	105.23	76.32	120.6	59.52
Merged-chr11-72458151-3	chr11	72458037	72458237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 5 of 12)	intron (NM_153060, intron 5 of 12)	16810.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	81.16	80.24	54.76	40.62	81.82	128.88	100.98	43.82	60.78	89.37	81.4	28.82
Merged-chr9-85326132-3	chr9	85326038	85326238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160379, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	986.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	18.57	11.57	37.08	21.72	38.05	17.25	28.23	25.57	53.5	37.16	59.29	29.13
Merged-chr11-58955109-3	chr11	58955012	58955212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	427.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	47.65	50.56	49.06	47.06	36.0	42.33	44.51	29.69	58.61	53.22	43.21	35.4
Merged-chr11-69758264-3	chr11	69758153	69758353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291068, exon 1 of 29)	5' UTR (NM_001291068, exon 1 of 29)	380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	109.43	84.51	79.29	74.81	102.28	113.51	69.76	78.5	140.63	123.52	139.19	65.47
Merged-chr16-55975106-3	chr16	55975005	55975205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	-488.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	43.21	42.51	34.8	39.82	58.5	62.71	44.51	73.12	76.31	68.29	74.37	40.41
Merged-chr3-129536392-3	chr3	129536281	129536481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-3993.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	33.92	24.9	27.38	42.63	45.0	44.53	39.86	75.17	49.96	40.67	72.86	25.06
Merged-chr18-32375599-3	chr18	32375507	32375707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045403, intron 1 of 2)	intron (NR_045403, intron 1 of 2)	-1610.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	26.65	26.91	23.96	23.73	20.05	18.5	14.95	21.9	34.62	25.61	44.72	22.56
Merged-chr15-79141280-3	chr15	79141193	79141393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310579)	promoter-TSS (NM_001310579)	-32.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	31.9	25.91	29.66	26.55	37.23	29.48	29.23	28.09	46.42	49.71	40.2	34.15
Merged-chr7-128312849-3	chr7	128312760	128312960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-14729.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	33.52	20.88	24.53	26.55	25.36	28.85	15.61	19.71	19.87	26.61	32.16	22.87
Merged-chr8-105636377-3	chr8	105636270	105636470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181322)	promoter-TSS (NM_181322)	-168.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	102.56	93.07	91.27	57.92	101.05	148.95	83.04	79.49	161.28	133.06	117.08	78.32
Merged-chr10-21605167-3	chr10	21605064	21605264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	12019.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	92.47	91.81	71.88	99.75	92.05	82.47	87.36	86.44	95.39	80.34	109.54	74.56
Merged-chr5-34573687-3	chr5	34573583	34573783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331081)	promoter-TSS (NM_001331081)	19.0	NM_001331086	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	146.58	106.14	119.23	103.77	162.41	147.38	98.65	124.74	151.45	153.64	183.41	101.5
Merged-chr5-100500787-3	chr5	100500690	100500890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-151.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	95.7	91.56	88.99	53.49	106.78	148.95	62.12	78.08	142.99	145.61	147.73	63.28
Merged-chr10-76531460-3	chr10	76531341	76531541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-164.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	135.68	96.84	112.38	141.98	171.41	206.02	155.46	174.79	194.33	178.25	253.25	107.45
Merged-chr9-22071435-3	chr9	22071357	22071557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310759)	promoter-TSS (NM_001310759)	-81.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	58.15	52.57	36.51	37.0	46.23	78.08	33.55	46.93	94.02	79.83	81.4	47.3
Merged-chr6-70792891-3	chr6	70792780	70792980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-705.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	29.88	23.9	43.35	28.96	36.82	22.89	24.25	34.79	29.9	17.07	31.15	22.87
Merged-chr15-8636207-3	chr15	8636132	8636332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_148938, exon 10 of 10)	exon (NM_148938, exon 10 of 10)	74575.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	71.47	84.01	105.53	90.09	86.32	107.87	75.4	93.25	114.87	107.95	150.74	63.59
Merged-chr12-54405255-3	chr12	54405156	54405356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13938.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	23.02	14.34	38.79	21.72	46.23	45.15	39.2	60.0	39.34	57.24	68.84	36.34
Merged-chr11-26639690-2	chr11	26639587	26639787	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-45767.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.0	1.26	0.0	1.61	58.5	36.69	34.21	21.48	67.46	58.24	65.83	21.93
Merged-chr13-116949698-3	chr13	116949605	116949805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	75811.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	62.18	41.25	54.76	45.05	44.18	48.6	32.88	51.81	74.35	55.23	82.41	26.94
Merged-chr1-107584042-3	chr1	107583996	107584196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5910.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	61.38	67.66	51.91	85.67	48.27	70.24	54.48	53.78	54.48	56.74	61.81	23.81
Merged-chr7-105777911-3	chr7	105777806	105778006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	9644.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	27.46	32.7	18.25	30.16	51.14	28.85	39.53	61.18	32.85	39.67	61.81	35.4
Merged-chr4-41135968-3	chr4	41135868	41136068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-53.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	22.21	18.86	31.38	15.28	38.05	37.94	36.54	27.03	28.13	45.19	47.23	29.13
Merged-chr9-48390111-1	chr9	48390011	48390211	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172921, intron 4 of 8)	intron (NM_172921, intron 4 of 8)	28070.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.82	0.63	0.0	0.0	20.26	5.02	18.09	6.89
Merged-chr11-32642866-1	chr11	32642766	32642966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001271349, exon 1 of 12)	5' UTR (NM_001271349, exon 1 of 12)	311.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	39.17	36.22	56.48	41.83	27.41	45.47	36.87	34.74	30.49	40.17	44.72	35.4
Merged-chr16-59639254-3	chr16	59639164	59639364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	75.0	NM_019665	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	138.5	145.89	115.23	168.52	155.46	164.63	137.52	165.65	163.45	157.16	227.62	107.14
Merged-chr10-127070359-3	chr10	127070261	127070461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	-100.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	55.72	51.56	69.03	82.45	67.5	74.0	40.52	56.94	73.95	71.8	81.9	32.27
Merged-chr16-92801062-3	chr16	92800956	92801156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	25018.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	25.84	15.09	34.8	26.95	34.77	21.95	26.24	35.58	36.58	17.07	39.7	25.37
Merged-chr16-30789142-3	chr16	30789046	30789246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	189423.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	86.41	73.19	78.72	104.57	104.32	100.34	66.1	103.82	98.34	101.93	131.15	59.83
Merged-chr11-53519834-3	chr11	53519725	53519925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	89.0	NM_001347496	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	36.34	35.97	26.81	46.66	46.64	43.27	20.93	40.04	41.11	37.66	49.75	28.82
Merged-chr5-117486282-3	chr5	117486161	117486361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	72259.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	55.32	43.01	56.48	49.87	51.55	68.99	36.54	49.35	53.3	40.67	57.79	45.42
Merged-chr16-11346379-3	chr16	11346264	11346464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	23460.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	50.07	36.97	46.21	57.92	53.59	57.38	40.19	76.68	45.04	44.69	55.27	36.97
Merged-chr19-3914732-3	chr19	3914636	3914836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1962.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	63.4	51.81	83.86	56.71	55.23	75.57	39.86	50.55	64.32	47.7	65.83	32.58
Merged-chr11-3145786-2	chr11	3145677	3145877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 15 of 32)	URR1B|DNA|hAT-Charlie	21756.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	29.48	15.34	44.5	27.35	99.0	52.99	71.42	114.11	0.59	0.5	2.01	0.94
Merged-chr11-117962272-3	chr11	117962120	117962320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7146.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	14.94	14.59	13.69	12.47	34.77	31.67	18.6	11.78	29.9	24.1	22.61	15.66
Merged-chr7-141221852-3	chr7	141221753	141221953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029793)	promoter-TSS (NR_029793)	-360.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	51.28	27.67	52.48	30.16	73.64	83.1	46.84	73.51	72.18	62.26	90.45	23.49
Merged-chr6-115375853-2	chr6	115375765	115375965	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	Lx8b|LINE|L1	13516.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	23.42	9.31	26.81	27.35	25.36	20.7	8.97	24.36	29.9	17.57	36.18	23.49
Merged-chr9-78527496-3	chr9	78527398	78527598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45774.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	163.54	134.32	131.78	140.77	163.23	219.5	160.11	152.38	174.46	203.85	164.81	105.26
Merged-chr3-142577290-3	chr3	142577203	142577403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	16947.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	43.61	30.43	39.36	41.02	30.68	52.37	31.89	42.5	45.24	47.7	65.32	27.88
Merged-chr12-52097777-3	chr12	52097683	52097883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	37.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	38.76	47.54	35.94	55.5	54.0	58.32	68.76	68.86	53.89	53.73	58.29	32.58
Merged-chr1-136673533-3	chr1	136673442	136673642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9854.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	36.75	28.93	33.66	28.15	46.23	39.82	39.2	46.4	53.3	29.12	72.36	26.31
Merged-chr5-146777242-3	chr5	146777118	146777318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	17738.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	21.0	13.58	17.68	18.9	47.87	31.04	35.21	29.07	50.55	55.23	54.27	31.33
Merged-chr4-119422359-3	chr4	119422258	119422458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	62.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	25.84	22.64	18.25	14.08	37.23	44.84	25.24	22.79	32.45	27.11	39.7	14.1
Merged-chr3-158031747-3	chr3	158031645	158031845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	27.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	98.53	85.77	79.29	65.56	81.82	101.91	76.07	99.65	99.72	95.9	138.69	67.04
Merged-chr11-98775423-3	chr11	98775323	98775523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-46.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	99.74	105.39	94.7	67.17	110.46	142.68	62.12	72.36	108.38	132.05	86.93	55.13
Merged-chr12-85599727-3	chr12	85599634	85599834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205053)	promoter-TSS (NM_001205053)	-284.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	86.82	78.48	85.0	61.54	72.0	133.58	53.81	50.64	130.4	135.57	185.42	66.1
Merged-chr2-122146856-3	chr2	122146763	122146963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-824.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	28.67	17.36	36.51	24.13	25.77	24.77	20.26	24.34	48.58	41.17	38.19	20.36
Merged-chr19-5924155-3	chr19	5924078	5924278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	638.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	23.82	21.63	30.23	16.49	27.41	30.73	14.95	11.61	25.96	26.61	23.62	23.18
Merged-chr5-24577484-3	chr5	24577325	24577525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	42.0	NM_013853	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	179.69	167.01	157.45	180.19	170.6	221.7	145.49	164.97	241.34	270.13	283.4	184.2
Merged-chr18-46198982-3	chr18	46198951	46199151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170855)	promoter-TSS (NM_001170855)	-233.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	45.63	50.81	59.33	59.53	58.5	52.68	82.71	65.13	51.34	53.22	62.81	41.04
Merged-chr4-10923388-3	chr4	10923285	10923485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48887.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	102.56	118.97	163.72	201.5	143.19	128.88	122.24	196.18	160.1	147.62	187.93	78.94
Merged-chr13-43790824-3	chr13	43790710	43790910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5698.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	126.79	86.02	125.5	111.41	106.37	157.1	85.04	108.65	114.67	145.61	129.64	67.98
Merged-chr12-110889794-3	chr12	110889700	110889900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	536.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	51.69	34.96	58.19	39.42	49.91	45.15	47.17	57.98	50.16	47.7	63.82	40.41
Merged-chr9-37348409-3	chr9	37348324	37348524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081429)	promoter-TSS (NM_001081429)	-32.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	109.83	95.83	116.94	106.18	85.09	111.0	83.71	142.43	145.16	132.05	186.92	114.03
Merged-chr10-94601189-3	chr10	94601081	94601281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14982.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	38.76	23.9	19.4	24.94	33.96	42.33	29.56	27.11	39.93	32.64	38.19	26.31
Merged-chr2-30658614-3	chr2	30658509	30658709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_136917, exon 4 of 4)	non-coding (NR_136917, exon 4 of 4)	19402.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	108.62	89.29	58.76	90.09	112.09	106.61	46.5	76.09	114.87	124.02	102.0	61.71
Merged-chr9-124279796-3	chr9	124279679	124279879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32915.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	21.8	19.37	32.52	18.5	26.59	33.87	12.62	22.07	45.24	50.71	46.23	24.12
Merged-chr3-22073277-3	chr3	22073164	22073364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3388.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	55.72	49.55	62.75	76.42	58.91	62.09	52.82	67.99	52.71	60.75	70.85	42.29
Merged-chr17-63864411-3	chr17	63864315	63864515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	CpG	434.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	32.3	30.18	40.5	39.01	47.46	45.15	34.88	35.94	39.34	45.19	47.23	26.94
Merged-chr6-59208875-3	chr6	59208784	59208984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081145)	promoter-TSS (NM_001081145)	14.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	184.13	174.56	170.57	172.54	191.87	225.77	231.52	238.88	247.24	247.54	270.84	159.45
Merged-chr5-146781838-3	chr5	146781724	146781924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	13132.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	125.18	111.93	104.39	121.87	115.37	143.3	86.03	128.78	149.68	139.08	182.4	82.7
Merged-chr18-36515329-1	chr18	36515229	36515429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010415, intron 1 of 5)	CpG	476.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	56.13	38.74	26.24	19.31	18.82	33.55	23.25	25.18	55.27	39.67	29.14	11.28
Merged-chr11-71817633-3	chr11	71817547	71817747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66632.0	NM_001357965	216881.0	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	32.3	26.16	32.52	50.68	42.14	31.36	42.52	66.03	41.3	22.59	42.71	24.43
Merged-chr13-48978013-3	chr13	48977918	48978118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	9906.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	25.44	23.9	19.97	19.31	16.77	23.52	23.25	14.52	35.01	18.08	24.12	14.1
Merged-chr9-65568887-3	chr9	65568763	65568963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	MTD|LTR|ERVL-MaLR	11224.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	103.37	96.84	103.82	105.38	114.55	142.36	131.54	116.24	149.48	137.07	159.29	98.99
Merged-chr3-96263289-3	chr3	96263148	96263348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	69.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	31.9	47.79	35.94	53.09	18.41	47.66	30.56	31.54	66.09	50.21	82.91	41.35
Merged-chr1-156560685-3	chr1	156560585	156560785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1898.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	37.96	28.67	19.97	32.18	29.05	43.27	24.58	40.93	64.71	62.76	60.3	34.77
Merged-chr15-86202054-3	chr15	86201903	86202103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12456.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	26.25	24.4	21.68	22.12	22.91	31.04	28.23	24.79	28.72	21.59	29.14	18.17
Merged-chr5-76906044-3	chr5	76905947	76906147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	-533.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	45.63	25.4	41.07	18.5	34.36	52.99	31.22	32.86	57.24	51.72	43.21	27.25
Merged-chr1-154032835-3	chr1	154032723	154032923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132894.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	111.45	116.21	78.15	78.03	115.78	146.44	72.41	79.4	140.83	122.51	161.3	61.09
Merged-chr2-179978143-1	chr2	179978043	179978243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033782, exon 2 of 2)	non-coding (NR_033782, exon 2 of 2)	1290.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	4.04	3.52	9.13	4.83	2.86	3.45	8.97	9.95	5.51	14.06	12.06	4.7
Merged-chr11-12535736-3	chr11	12535639	12535839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70779.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	19.79	15.34	23.39	38.21	23.73	47.35	30.23	37.23	37.96	27.62	23.11	22.56
Merged-chr17-66111617-3	chr17	66111528	66111728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-17.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	65.01	80.99	91.84	82.45	92.05	91.88	110.61	103.79	102.08	82.85	134.16	82.39
Merged-chr10-126978582-3	chr10	126978500	126978700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113470)	promoter-TSS (NM_001113470)	-117.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	111.85	70.68	77.01	82.05	87.55	91.56	62.45	82.26	117.03	100.92	127.13	82.39
Merged-chr9-75441508-3	chr9	75441412	75441612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-12.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	95.7	96.08	110.1	80.44	83.05	134.21	101.64	93.65	112.11	109.46	118.59	69.86
Merged-chr14-61518861-3	chr14	61518777	61518977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	26189.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	26.65	26.16	37.65	37.0	38.86	68.05	61.45	57.95	25.37	37.16	27.13	32.27
Merged-chr1-165644565-3	chr1	165644467	165644667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10026.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	21.8	17.36	38.79	28.96	35.59	45.78	54.81	61.01	36.39	35.65	57.28	29.76
Merged-chr2-103569952-3	chr2	103569864	103570064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	3654.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	31.09	37.48	37.08	14.88	31.91	31.98	17.27	13.51	67.46	61.76	53.26	27.88
Merged-chr17-8144108-3	chr17	8144043	8144243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026611, intron 2 of 8)	intron (NM_026611, intron 2 of 8)	3645.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	50.47	37.23	69.03	49.47	46.64	47.04	36.21	39.79	36.98	37.16	46.23	20.05
Merged-chr14-75787052-3	chr14	75786973	75787173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-36.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	107.81	129.79	156.31	140.77	153.0	161.18	118.92	154.29	182.33	171.72	189.94	88.34
Merged-chr5-4531255-1	chr5	4531155	4531355	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	226961.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	3.63	4.53	4.56	0.0	12.68	4.39	2.99	14.24	12.78	7.53	19.6	15.98
Merged-chr7-25706494-3	chr7	25706416	25706616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12537.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	19.38	18.86	23.96	18.9	18.0	26.03	12.29	16.37	28.72	20.08	22.11	13.47
Merged-chr4-132247704-3	chr4	132247603	132247803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122992, intron 3 of 10)	intron (NM_001122992, intron 3 of 10)	13846.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	38.36	32.2	65.6	66.77	53.18	52.99	79.72	89.92	45.63	51.72	71.86	47.3
Merged-chr4-134098818-3	chr4	134098717	134098917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3744.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	101.35	104.38	120.37	130.71	121.09	137.97	84.37	96.06	119.39	121.51	137.68	64.53
Merged-chr15-51729077-3	chr15	51728962	51729162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136399.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	109.02	115.2	99.26	114.22	99.82	141.73	80.72	98.97	181.54	145.61	168.33	98.05
Merged-chr11-102946784-3	chr11	102946696	102946896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011795)	promoter-TSS (NM_011795)	-335.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	25.04	23.14	34.23	21.72	15.55	29.16	29.9	22.29	47.99	29.12	28.14	16.29
Merged-chr8-85081430-3	chr8	85081330	85081530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	467.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	45.63	34.96	31.38	44.24	42.96	42.96	34.55	44.33	45.43	43.18	71.86	38.53
Merged-chr7-128392503-3	chr7	128392380	128392580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25692.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	109.02	100.61	81.0	80.84	77.73	122.61	82.38	92.3	105.62	112.47	127.13	72.36
Merged-chr1-74375154-3	chr1	74375052	74375252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-51.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	107.01	89.8	162.58	112.62	154.23	196.3	117.92	146.72	165.41	186.28	192.95	113.4
Merged-chrX-77510886-3	chrX	77510734	77510934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020601)	promoter-TSS (NM_020601)	-393.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	19.79	25.91	19.4	20.91	30.68	30.1	30.23	18.11	28.32	37.66	28.14	15.98
Merged-chr5-90897607-3	chr5	90897538	90897738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6261.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	89.64	55.34	85.0	66.77	133.37	102.22	76.73	108.84	129.62	98.41	130.14	65.47
Merged-chr18-6516176-3	chr18	6516086	6516286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	-78.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	105.39	94.07	93.55	81.24	101.05	142.68	76.4	98.92	128.83	142.1	186.42	105.88
Merged-chr5-123886612-3	chr5	123886498	123886698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6578.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	46.44	47.54	39.36	22.52	66.27	89.37	21.59	29.44	78.87	75.82	36.18	22.87
Merged-chr1-170175062-3	chr1	170174964	170175164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-100.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	263.27	257.31	225.33	219.2	285.15	382.87	214.58	260.86	323.36	342.44	326.11	161.65
Merged-chr19-60940142-3	chr19	60940040	60940240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	50391.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	43.21	42.51	67.88	73.2	64.23	56.13	68.43	75.06	68.64	53.73	92.96	43.54
Merged-chr15-89476181-3	chr15	89476077	89476277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_077233)	promoter-TSS (NR_077233)	-75.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	119.12	90.3	118.65	103.77	132.14	132.01	110.28	143.47	169.35	156.15	247.22	113.72
Merged-chrX-101954320-3	chrX	101954208	101954408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	104923.0	NM_001163610	100042480.0	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|Gm10456	NHS-like 2	protein-coding	52.49	52.32	84.43	69.98	79.37	81.53	70.75	99.62	79.46	84.86	130.14	62.97
Merged-chr18-49834174-3	chr18	49834095	49834295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1198.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	41.59	26.16	29.09	42.63	50.73	31.36	57.47	88.93	39.53	20.08	48.24	29.13
Merged-chr7-46833461-3	chr7	46833346	46833546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12358.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	18.57	27.17	41.07	22.52	41.32	38.57	50.16	90.51	36.98	32.64	58.29	38.53
Merged-chr14-30435561-3	chr14	30435470	30435670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-22466.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	24.23	23.39	40.5	24.13	44.59	40.76	26.24	41.64	41.89	40.67	43.21	34.46
Merged-chr11-70844782-3	chr11	70844687	70844887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	26.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	51.28	36.97	34.8	18.5	49.09	42.65	21.26	25.46	41.11	43.68	27.13	27.57
Merged-chr16-23296981-3	chr16	23296889	23297089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	6519.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	45.63	44.27	60.47	77.22	59.32	77.77	65.44	64.29	70.02	52.72	99.99	61.09
Merged-chr8-46818333-3	chr8	46818221	46818421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	78576.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	24.63	19.62	31.38	32.98	38.86	40.14	29.23	43.09	41.7	31.13	43.21	37.59
Merged-chr10-127641977-3	chr10	127641896	127642096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-990.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	21.4	18.61	28.52	15.69	25.77	31.98	18.93	15.42	31.47	27.11	38.69	15.35
Merged-chr17-67474157-3	chr17	67474052	67474252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119661.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	30.28	61.12	74.73	73.6	58.09	73.38	53.81	82.29	90.28	99.42	123.11	73.62
Merged-chr13-81657688-3	chr13	81657588	81657788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-118.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	184.53	190.91	168.28	197.88	210.69	259.32	188.34	240.98	242.52	253.06	330.63	155.69
Merged-chr19-61228474-3	chr19	61228379	61228579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-61.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	70.66	66.91	78.15	65.56	85.09	90.31	69.42	79.68	94.61	85.86	109.04	44.17
Merged-chr15-59759824-3	chr15	59759713	59759913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35146.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	14.54	21.63	27.95	14.88	61.37	53.93	42.85	44.89	33.24	56.74	67.33	37.59
Merged-chr6-128887538-3	chr6	128887429	128887629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289707)	promoter-TSS (NM_001289707)	-58.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	26.65	21.38	23.39	20.91	16.36	24.15	11.29	14.64	28.72	29.62	28.64	18.48
Merged-chr5-125405147-3	chr5	125405056	125405256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15139.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	20.59	31.44	35.37	21.32	27.82	29.16	30.89	33.11	49.96	29.62	51.76	43.23
Merged-chr2-181186765-3	chr2	181186667	181186867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151465)	promoter-TSS (NR_151465)	-55.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	28.27	22.64	28.52	17.7	26.18	30.1	21.26	24.95	33.04	36.15	30.15	24.75
Merged-chr12-78868317-3	chr12	78868219	78868419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026114, intron 2 of 7)	RLTR35B_MM|LTR|ERVL	6247.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	31.5	38.74	52.48	39.82	58.91	48.6	34.55	49.12	50.75	43.68	66.83	33.52
Merged-chr6-83413240-4	chr6	83413138	83413338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-12136.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	27.46	17.36	13.69	25.34	20.05	16.62	13.95	29.07	25.37	27.62	25.63	26.0
Merged-chr10-80150461-1	chr10	80150361	80150561	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 2 of 7)	CpG-1261	779.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	7.27	3.77	8.56	8.85	6.95	2.2	2.66	3.95	10.62	21.09	7.03	11.28
Merged-chr15-101279603-1	chr15	101279503	101279703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4698.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	14.94	13.58	0.0	0.0	1.64	9.09	0.33	0.9	4.52	16.57	1.0	0.94
Merged-chr6-5211881-3	chr6	5211786	5211986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17940.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	20.19	34.71	39.36	54.7	52.77	36.69	46.5	79.23	39.53	48.2	45.22	36.97
Merged-chr8-8689993-3	chr8	8689909	8690109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106114)	TTS (NR_106114)	153.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	38.36	22.89	32.52	44.24	36.82	26.03	35.21	43.82	62.35	54.73	46.73	19.11
Merged-chr4-145254582-3	chr4	145254470	145254670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-7700.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	75.11	59.11	59.9	45.45	91.23	121.98	72.41	69.53	107.59	109.46	76.88	70.17
Merged-chr4-16214144-3	chr4	16214042	16214242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 3 of 6)	MTD|LTR|ERVL-MaLR	50032.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	20.19	19.12	32.52	23.33	26.59	18.5	24.25	24.84	42.48	24.1	37.69	15.98
Merged-chr12-81859896-3	chr12	81859794	81859994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018814)	promoter-TSS (NM_018814)	-136.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	21.4	14.84	20.54	17.7	26.59	31.04	19.6	26.22	21.64	21.59	45.22	11.9
Merged-chr8-11558205-3	chr8	11558083	11558283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-227.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	243.08	284.23	309.76	309.69	306.01	357.79	339.48	301.91	400.85	428.8	503.99	303.24
Merged-chr5-107869140-3	chr5	107869049	107869249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	CpG	5958.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	78.34	48.04	84.43	57.51	58.09	49.23	46.84	63.08	66.09	71.3	86.43	47.62
Merged-chr6-76268295-3	chr6	76268195	76268395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-974182.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	33.11	38.23	67.31	62.34	26.59	38.88	46.84	77.78	50.94	62.26	62.31	26.63
Merged-chr7-125555666-3	chr7	125555568	125555768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	3386.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	87.22	59.36	116.37	59.53	51.14	46.41	43.85	54.22	78.87	96.4	112.05	67.67
Merged-chr18-3281129-3	chr18	3281035	3281235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-3.0	NM_001311067	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	90.05	55.34	79.86	81.24	92.05	110.38	63.11	91.93	134.93	104.44	130.14	69.86
Merged-chr13-49309267-3	chr13	49309172	49309372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015759)	promoter-TSS (NM_015759)	-64.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	67.03	55.08	73.59	82.85	63.0	72.75	72.41	68.97	86.54	91.89	94.97	67.67
Merged-chr8-105393950-3	chr8	105393860	105394060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18579.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	25.04	20.63	27.38	6.44	19.23	36.37	17.27	10.91	25.18	40.17	26.63	20.68
Merged-chr15-103453696-3	chr15	103453592	103453792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153505)	promoter-TSS (NM_153505)	-133.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	102.56	121.99	118.08	158.06	125.59	125.74	94.34	130.94	130.8	114.98	186.92	85.84
Merged-chr19-37955645-3	chr19	37955548	37955748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 22 of 53)	intron (NM_001302140, intron 22 of 53)	87929.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	52.9	44.27	50.2	42.63	56.87	69.61	52.48	53.27	59.4	59.75	58.29	38.85
Merged-chr12-100168794-3	chr12	100168714	100168914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9161.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	44.01	44.27	41.07	43.84	50.32	80.27	47.83	35.52	53.3	54.73	52.26	37.28
Merged-chr10-80622515-3	chr10	80622454	80622654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-226.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	163.13	165.51	111.24	133.13	143.19	197.24	135.53	104.38	215.57	229.96	213.56	110.9
Merged-chr3-131976090-3	chr3	131976009	131976209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109183.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	12.92	20.63	26.24	14.88	20.86	31.98	22.26	32.89	31.47	34.65	48.74	23.49
Merged-chr6-124931347-3	chr6	124931264	124931464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-24.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	117.5	129.03	106.68	111.41	158.32	152.4	121.24	113.38	186.85	165.19	209.03	116.54
Merged-chr9-106477159-3	chr9	106477065	106477265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-144.0	NM_145620	27966.0	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	273.37	283.72	309.19	291.59	273.28	386.32	234.18	292.85	364.86	354.49	438.67	210.52
Merged-chr16-33922443-3	chr16	33922359	33922559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	44579.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	77.53	41.0	84.43	86.47	103.09	71.81	119.58	117.08	107.98	98.91	124.62	92.73
Merged-chr10-67979541-3	chr10	67979439	67979639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359318)	promoter-TSS (NM_001359318)	-31.0	NM_001359318	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	49.26	49.8	55.9	60.33	110.46	116.65	56.47	73.91	66.87	75.32	98.49	45.74
Merged-chr10-67009955-3	chr10	67009834	67010034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	4859.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	18.17	19.12	23.96	16.89	17.59	30.1	23.25	27.76	15.93	22.09	21.61	12.22
Merged-chr3-28109570-1	chr3	28109470	28109670	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	125399.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.23	1.01	6.85	2.01	3.68	4.08	6.64	13.65	4.33	4.52	8.54	3.45
Merged-chr5-36796814-3	chr5	36796714	36796914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-60.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	49.67	69.17	52.48	50.68	61.37	59.89	49.16	44.19	117.03	97.41	113.56	60.77
Merged-chr13-12650361-3	chr13	12650193	12650393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003568, exon 1 of 7)	non-coding (NR_003568, exon 1 of 7)	102.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	25.84	36.47	38.22	49.07	38.46	48.29	37.2	35.07	40.12	45.69	41.2	29.13
Merged-chr17-23546487-3	chr17	23546358	23546558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4341.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	23.42	20.12	30.23	27.35	29.05	30.42	19.93	13.54	23.6	30.63	21.1	22.24
Merged-chr17-63921813-3	chr17	63921706	63921906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 5 of 18)	intron (NM_001037997, intron 5 of 18)	-16166.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	17.77	17.36	18.25	20.91	31.91	34.18	49.83	56.16	26.36	24.6	47.23	23.49
Merged-chr4-41348968-3	chr4	41348886	41349086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-10.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	106.2	80.24	63.89	76.02	84.28	90.31	68.1	66.36	110.15	124.52	120.09	83.96
Merged-chr3-81036831-3	chr3	81036728	81036928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	412.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	31.5	24.9	23.96	28.15	18.82	35.43	41.52	33.73	21.44	24.1	30.65	21.93
Merged-chr4-21879825-3	chr4	21879723	21879923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356348)	promoter-TSS (NM_001356348)	-30.0	NM_001356348	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	32.3	25.66	25.1	28.96	37.64	24.15	24.91	37.29	36.19	31.13	50.75	27.25
Merged-chr1-157039266-3	chr1	157039179	157039379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69371.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	101.76	104.13	142.04	109.0	94.5	142.36	131.87	95.02	133.35	150.63	169.84	66.41
Merged-chr4-144904159-3	chr4	144904050	144904250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	11013.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	71.07	51.81	77.01	64.35	94.5	86.23	88.36	125.94	81.82	73.81	110.55	57.95
Merged-chr9-123924252-3	chr9	123924158	123924358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44434.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	51.69	44.02	54.19	40.22	58.5	73.06	31.22	50.16	111.52	78.83	83.91	58.27
Merged-chr17-26576996-3	chr17	26576896	26577096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	MIRc|SINE|MIR	15484.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	23.02	16.1	26.24	21.32	27.82	19.76	23.25	25.77	38.55	22.59	34.67	19.11
Merged-chr19-44293953-3	chr19	44293840	44294040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009128, exon 1 of 6)	5' UTR (NM_009128, exon 1 of 6)	264.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	27.46	24.65	33.09	28.56	32.32	33.87	34.21	39.48	39.93	33.64	55.27	26.63
Merged-chr11-119942937-3	chr11	119942846	119943046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130862)	promoter-TSS (NM_130862)	-146.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	161.52	169.03	162.01	154.85	147.28	159.29	90.35	121.32	188.03	171.22	183.41	100.25
Merged-chr8-26744612-3	chr8	26744522	26744722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79801.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	31.9	27.67	50.2	38.21	40.91	34.81	64.77	66.22	39.34	38.16	43.21	37.59
Merged-chr11-109331537-3	chr11	109331442	109331642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15325.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	58.15	58.61	75.87	47.46	61.37	65.54	36.21	55.4	77.5	68.79	97.98	38.22
Merged-chr1-178187515-3	chr1	178187420	178187620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	103.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	406.22	446.71	459.79	470.57	281.87	358.73	240.82	211.91	373.71	389.13	506.5	219.6
Merged-chr1-93445565-3	chr1	93445410	93445610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133808, intron 1 of 27)	CpG	191.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	89.24	141.36	61.61	55.5	64.64	119.47	59.79	44.94	115.65	143.1	78.89	57.01
Merged-chr3-96240320-3	chr3	96240222	96240422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013549).2	promoter-TSS (NM_013549).2	12.0	NM_013549	15267.0	Mm.5220	NM_013549	ENSMUSG00000064220	Hist2h2aa1	AI448581|H2a-614|H2a-615|Hist2	histone cluster 2, H2aa1	protein-coding	31.9	30.43	22.25	26.55	81.41	84.66	60.12	35.94	63.33	35.15	57.28	31.01
Merged-chr16-45252645-1	chr16	45252545	45252745	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177584, exon 6 of 6)	3' UTR (NM_177584, exon 6 of 6)	28308.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.42	1.51	0.0	1.21	4.5	10.35	3.32	13.07	0.2	3.01	2.01	0.63
Merged-chr13-9129060-3	chr13	9128959	9129159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	35178.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	101.76	87.28	110.1	76.02	94.5	139.85	139.84	139.51	146.53	157.66	134.16	84.9
Merged-chr15-52712380-3	chr15	52712288	52712488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027212)	promoter-TSS (NM_027212)	-57.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	147.79	103.88	103.82	119.45	141.14	150.2	98.32	191.72	168.96	166.2	241.19	84.9
Merged-chr6-88828188-3	chr6	88828106	88828306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	13729.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	107.01	86.78	128.35	113.02	119.87	136.09	90.35	147.2	125.09	158.67	186.92	98.37
Merged-chr1-191849651-3	chr1	191849555	191849755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28182.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	39.57	29.43	60.47	67.17	40.91	44.53	47.17	91.51	99.52	58.75	165.82	103.69
Merged-chr10-127600394-3	chr10	127600295	127600495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20753.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	52.09	38.48	79.86	74.41	69.14	66.48	67.1	79.71	65.3	49.21	76.38	44.8
Merged-chr6-134173532-3	chr6	134173437	134173637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	137837.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	29.88	23.39	21.68	26.14	30.68	36.69	29.56	36.56	20.65	21.09	34.17	15.98
Merged-chr5-147542464-3	chr5	147542366	147542566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	112310.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	85.2	71.43	103.25	117.44	86.32	79.96	69.42	114.93	98.74	95.9	138.18	60.77
Merged-chr17-67450304-3	chr17	67450209	67450409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95818.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	14.94	11.57	21.68	20.91	17.59	15.05	11.63	26.72	18.49	16.57	30.65	19.11
Merged-chr18-38576201-3	chr18	38576113	38576313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25055.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	26.65	17.1	15.4	14.08	20.46	17.56	24.58	20.5	18.69	24.1	29.65	13.78
Merged-chr7-46033681-3	chr7	46033559	46033759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153057)	promoter-TSS (NM_153057)	-37.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	149.4	153.43	163.15	123.07	143.19	174.35	151.47	132.06	190.98	176.24	200.99	116.54
Merged-chr2-120629021-3	chr2	120628929	120629129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19434.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	214.82	171.04	187.11	180.19	214.37	229.85	172.06	200.52	263.76	236.49	322.59	175.74
Merged-chr10-117710192-3	chr10	117710096	117710296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010786, intron 1 of 11)	CpG-1528	562.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	51.28	34.21	54.19	49.47	66.27	48.29	50.49	55.79	63.53	59.25	56.78	46.68
Merged-chr7-18910536-3	chr7	18910406	18910606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033314)	promoter-TSS (NM_001033314)	-102.0	NM_001033314	232933.0	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	163.94	159.97	196.81	177.77	190.64	224.2	145.82	193.57	238.39	227.96	278.38	104.0
Merged-chr14-70883004-3	chr14	70882891	70883091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7116.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	64.61	70.68	34.8	43.84	50.73	75.57	46.5	32.19	111.13	110.46	117.58	45.11
Merged-chr12-3904111-3	chr12	3904016	3904216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	12372.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	43.21	43.26	67.88	63.15	40.5	54.56	59.46	74.36	51.34	50.21	95.97	50.12
Merged-chr1-92082981-3	chr1	92082870	92083070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	97371.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	38.36	37.48	56.48	74.41	64.23	51.74	56.8	71.1	59.6	38.16	71.86	35.71
Merged-chr9-107633500-3	chr9	107633414	107633614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1828.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	24.23	19.37	13.69	26.14	26.18	26.34	24.91	21.48	34.03	36.15	57.79	26.0
Merged-chr5-90877063-3	chr5	90876984	90877184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-14161.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	15.75	12.32	54.76	42.63	45.82	30.73	51.49	59.16	39.14	50.71	70.35	35.4
Merged-chr5-124621617-3	chr5	124621525	124621725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026486, intron 13 of 18)	L1MB5|LINE|L1	-7427.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	36.34	41.5	56.48	39.42	23.32	28.54	18.27	26.24	41.11	29.62	37.69	24.43
Merged-chr15-83009739-3	chr15	83009624	83009824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13414.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	88.84	87.28	116.37	96.13	139.91	147.38	94.34	128.75	126.86	156.15	139.69	86.15
Merged-chr13-23535279-3	chr13	23535164	23535364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-154.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	33.11	19.62	16.54	38.61	45.0	31.67	20.93	25.6	44.65	41.17	52.76	29.76
Merged-chr13-3893573-3	chr13	3893462	3893662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001047159)	promoter-TSS (NM_001047159)	19.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	38.76	36.97	31.95	55.1	46.23	41.08	32.88	46.74	47.4	39.67	56.28	37.91
Merged-chr7-35318383-3	chr7	35318247	35318447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026181)	promoter-TSS (NM_026181)	93.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	27.86	40.24	29.66	30.57	39.27	34.18	50.82	37.49	34.03	28.62	43.21	24.43
Merged-chr9-95857658-3	chr9	95857588	95857788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	91.0	NM_019864	245000.0	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	88.84	103.88	84.43	68.37	65.05	90.0	80.39	57.95	107.0	104.44	93.46	75.18
Merged-chr7-30664975-3	chr7	30664810	30665010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027999)	promoter-TSS (NM_027999)	84.0	NM_027999	71909.0	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	39.17	48.29	45.64	34.99	38.86	44.84	12.62	30.42	38.94	39.16	23.62	24.75
Merged-chr8-80272719-1	chr8	80272619	80272819	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-214711.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	7.27	2.77	3.42	4.83	2.86	4.7	11.63	10.82	3.54	5.52	5.02	3.45
Merged-chr11-83544451-3	chr11	83544336	83544536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13918.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	38.36	34.96	33.09	18.1	44.59	63.66	39.86	39.67	51.73	50.21	61.3	19.11
Merged-chr5-34949436-3	chr5	34949338	34949538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-10.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	78.74	51.31	60.47	63.95	73.23	57.38	63.11	60.53	71.0	63.77	83.41	32.58
Merged-chr9-21168463-3	chr9	21168377	21168577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2763.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	125.58	118.22	123.79	73.6	103.09	150.51	76.07	81.84	136.3	113.48	133.16	68.29
Merged-chr17-32830253-3	chr17	32830120	32830320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293229)	promoter-TSS (NM_001293229)	41.0	NM_001293229	240064.0	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	34.32	30.18	30.23	37.4	29.05	38.88	21.26	28.96	51.93	47.7	57.28	32.58
Merged-chr15-98484684-3	chr15	98484595	98484795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2012.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	67.03	50.81	64.46	69.98	64.64	58.32	34.88	59.61	67.07	62.76	64.82	41.66
Merged-chr2-32499547-1	chr2	32499447	32499647	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-35812.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	3.63	3.27	0.57	6.03	2.86	3.76	10.96	12.84	4.52	1.51	4.02	1.25
Merged-chr7-114292128-3	chr7	114292027	114292227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	42.8	16.6	19.4	41.83	24.96	33.55	23.92	37.96	60.38	34.65	60.3	41.66
Merged-chr18-80702649-3	chr18	80702544	80702744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	5529.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	105.79	95.08	81.58	107.39	95.73	65.22	101.98	95.64	63.73	70.29	66.83	57.95
Merged-chr13-108158664-3	chr13	108158566	108158766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362403)	promoter-TSS (NM_001362403)	-41.0	NM_001127346	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	112.26	79.23	86.71	114.63	128.05	145.18	103.64	134.41	158.73	125.02	203.0	95.86
Merged-chr3-159840299-3	chr3	159840192	159840392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	642.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	15.75	13.83	8.56	17.29	27.41	16.93	22.59	20.89	19.28	31.13	36.18	16.6
Merged-chr4-150606011-3	chr4	150605919	150606119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46155.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	18.17	20.12	24.53	32.18	31.09	27.59	31.22	44.64	35.8	18.58	36.18	27.25
Merged-chr8-13155509-3	chr8	13155379	13155579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3682.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	41.19	48.29	48.49	42.23	60.96	64.91	47.83	42.0	58.02	53.22	58.79	48.56
Merged-chr4-88550366-3	chr4	88550261	88550461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7884.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	58.55	61.88	72.45	75.61	67.5	89.68	27.24	74.61	107.0	76.82	130.14	55.76
Merged-chr2-119112720-3	chr2	119112600	119112800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011234)	promoter-TSS (NM_011234)	-117.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	31.09	42.01	32.52	31.37	41.32	42.02	34.21	22.49	34.81	39.67	26.13	25.37
Merged-chr10-44686207-3	chr10	44686094	44686294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-227446.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	31.9	27.67	37.65	25.74	15.14	30.1	26.91	38.5	34.42	21.59	44.22	15.04
Merged-chrX-8096979-3	chrX	8096867	8097067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003632)	promoter-TSS (NR_003632)	-120.0	NR_003632	627782.0	Mm.305432	NM_001037930	ENSMUSG00000086404	Gm6787	EG627782	proteasome (prosome, macropain) subunit, beta type 7 pseudogene	pseudo	58.15	68.92	84.43	57.11	87.55	81.53	50.16	62.8	84.97	96.4	109.04	29.76
Merged-chr4-102658740-3	chr4	102658645	102658845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68902.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	16.96	17.61	19.4	16.89	27.41	20.07	21.59	12.9	37.96	38.16	46.73	23.49
Merged-chr2-148568088-3	chr2	148567985	148568185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-104530.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	39.98	33.96	61.61	77.22	52.37	55.82	65.11	115.21	46.42	40.17	72.86	47.3
Merged-chr9-32686061-3	chr9	32685960	32686160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9982.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	28.67	27.17	54.19	41.83	29.05	42.02	38.86	46.82	37.37	26.11	53.26	29.13
Merged-chr3-152210350-3	chr3	152210190	152210390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	-132.0	NM_001355369	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	123.97	135.07	104.39	101.76	121.91	196.3	100.98	97.23	199.84	209.38	198.48	119.04
Merged-chr3-79842777-3	chr3	79842696	79842896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-134.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	62.59	78.98	63.89	84.86	68.32	76.83	77.73	70.46	59.2	73.31	83.91	48.87
Merged-chr16-85071951-3	chr16	85071852	85072052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	99741.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	137.69	131.55	160.3	174.55	94.09	117.28	118.25	152.27	109.36	104.44	144.71	85.52
Merged-chr14-20836761-3	chr14	20836679	20836879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008873, intron 1 of 10)	intron (NM_008873, intron 1 of 10)	117.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	29.07	38.48	26.81	28.56	36.0	82.78	19.27	23.44	28.32	53.22	25.63	27.25
Merged-chr10-111583311-1	chr10	111583211	111583411	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10962.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	3.23	2.52	0.0	5.23	5.73	3.14	9.3	11.05	2.16	3.51	3.52	2.19
Merged-chrX-109095397-3	chrX	109095305	109095505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019989)	promoter-TSS (NM_019989)	-2.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	46.84	24.9	52.48	45.45	30.27	48.6	15.28	31.51	53.11	52.22	72.36	29.45
Merged-chr15-98484120-3	chr15	98484004	98484204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1421.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	62.18	49.05	53.62	51.48	65.46	48.29	43.51	49.54	72.77	69.79	87.43	49.18
Merged-chr1-55808898-3	chr1	55808769	55808969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122372.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	13.73	21.13	20.54	22.12	28.23	16.31	10.96	24.93	18.69	22.09	28.64	12.53
Merged-chr11-23007767-3	chr11	23007651	23007851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5636.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	54.11	75.21	94.7	94.52	80.18	79.96	62.78	99.0	94.02	56.24	99.49	47.62
Merged-chr19-32990794-3	chr19	32990686	32990886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-166326.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	19.79	19.37	47.35	50.68	33.55	26.03	36.87	47.55	27.54	21.09	34.67	17.54
Merged-chr6-130092605-1	chr6	130092505	130092705	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013793, intron 3 of 7)	intron (NM_013793, intron 3 of 7)	-25334.0	NM_001252577	16635.0	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	70.61	66.28	57.79	45.11
Merged-chr9-71952740-3	chr9	71952633	71952833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 5 of 20)	MIRc|SINE|MIR	-56637.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	22.61	14.84	19.4	26.95	31.09	31.98	15.61	37.79	35.99	30.63	31.66	47.93
Merged-chr2-157135233-3	chr2	157135128	157135328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018851)	promoter-TSS (NM_018851)	-6.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	75.11	93.07	91.84	93.71	71.18	128.56	68.1	72.5	127.26	94.9	118.08	57.95
Merged-chr2-23039197-3	chr2	23039110	23039310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	1031.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	37.96	50.56	29.66	22.12	35.18	66.48	33.22	20.16	101.69	82.35	95.47	48.87
Merged-chr7-27361593-3	chr7	27361481	27361681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_032610, exon 33 of 36)	exon (NM_032610, exon 33 of 36)	-5573.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	181.71	195.19	219.63	180.59	211.92	240.51	179.7	174.65	285.39	254.57	315.56	140.97
Merged-chr14-52133828-3	chr14	52133726	52133926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023879, exon 10 of 25)	exon (NM_023879, exon 10 of 25)	22923.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	50.47	42.51	38.79	47.46	38.86	46.1	24.91	47.24	39.53	43.68	48.24	18.48
Merged-chr2-30929855-3	chr2	30929738	30929938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23163.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	19.38	18.11	6.85	15.69	20.46	61.77	14.62	15.39	34.62	45.69	26.63	22.24
Merged-chr3-137775222-1	chr3	137775122	137775322	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	8393.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	8.88	3.77	0.0	5.23	3.27	2.2	8.64	12.79	3.74	7.03	3.52	5.33
Merged-chr9-114752989-3	chr9	114752892	114753092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21789.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	146.98	193.43	181.41	178.98	179.6	238.94	142.5	170.64	236.42	257.58	323.1	134.7
Merged-chr12-12320891-3	chr12	12320794	12320994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	58755.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	50.07	35.21	136.34	74.0	109.23	90.0	90.35	144.0	77.69	51.72	102.51	54.51
Merged-chr9-121297805-6	chr9	121297705	121297905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152160, exon 1 of 18)	non-coding (NR_152160, exon 1 of 18)	303.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	26.65	30.94	12.55	9.65	24.14	20.38	13.62	14.24	36.19	41.17	39.19	32.27
Merged-chr15-59049020-3	chr15	59048924	59049124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33002.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	32.3	28.17	25.67	27.35	48.27	48.29	37.54	42.7	47.21	29.12	57.79	29.76
Merged-chr5-74641231-1	chr5	74641131	74641331	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159577, intron 2 of 10)	intron (NM_001159577, intron 2 of 10)	36641.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	6.46	8.3	2.28	5.63	15.55	11.92	13.95	18.62	4.52	2.51	8.54	5.01
Merged-chr5-41707730-3	chr5	41707606	41707806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-15.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	18.17	20.63	7.99	23.73	24.96	18.81	20.26	20.83	30.29	39.16	33.67	20.99
Merged-chr19-56720453-3	chr19	56720356	56720556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1916.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	57.74	30.43	27.38	24.94	65.87	75.57	67.1	34.85	53.7	71.3	58.79	27.25
Merged-chr13-70638167-3	chr13	70638090	70638290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-556.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	80.76	91.81	112.38	121.06	117.0	99.72	94.67	125.55	128.04	109.96	178.38	111.84
Merged-chr2-156720933-3	chr2	156720839	156721039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	-26.0	NM_001042488	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	102.56	99.61	77.01	79.64	110.87	139.85	56.47	69.5	143.19	147.62	120.6	60.46
Merged-chr4-155066984-3	chr4	155066879	155067079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-51.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	170.0	130.04	151.74	127.9	169.78	204.76	105.3	149.08	170.33	165.19	226.12	107.14
Merged-chr3-33800102-3	chr3	33799969	33800169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025978)	promoter-TSS (NM_025978)	-114.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	191.8	146.89	185.97	169.33	175.1	202.57	136.85	203.92	193.93	186.28	245.21	122.17
Merged-chr19-6340806-1	chr19	6340706	6340906	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-354.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	14.13	15.59	4.56	11.26	21.27	17.56	7.64	7.37	20.85	17.07	20.1	14.1
Merged-chr3-105704700-3	chr3	105704608	105704808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	109.0	NM_175398	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	12.52	24.4	20.54	16.09	33.55	26.97	22.26	14.78	12.78	17.07	15.58	7.21
Merged-chr1-171006555-3	chr1	171006462	171006662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12364.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	32.3	34.96	31.38	32.98	36.82	34.49	20.26	29.55	33.63	29.62	42.71	24.75
Merged-chr16-17451952-3	chr16	17451860	17452060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277231)	promoter-TSS (NM_001277231)	-25.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	103.37	66.65	116.94	95.72	103.5	103.79	72.41	105.73	126.67	131.55	165.32	81.45
Merged-chr15-60823316-3	chr15	60823204	60823404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162926, exon 2 of 2)	exon (NM_001162926, exon 2 of 2)	339.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	25.04	22.64	26.24	26.14	22.5	32.61	16.94	25.77	26.75	22.59	42.21	25.37
Merged-chr12-108334167-3	chr12	108334056	108334256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-160.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	100.95	126.27	135.77	123.07	76.91	85.61	59.13	60.7	34.81	37.66	39.7	13.47
Merged-chr1-79776095-3	chr1	79775998	79776198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	27.86	31.69	29.66	46.66	60.55	53.31	41.52	58.07	128.44	140.09	170.84	91.47
Merged-chr18-36734063-1	chr18	36733963	36734163	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-1007.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	8.88	15.59	8.56	5.63	16.36	30.73	10.96	3.59	23.01	28.12	21.1	7.83
Merged-chr18-53247157-3	chr18	53247052	53247252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	1490.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	88.03	79.73	121.51	108.19	101.05	92.19	113.93	113.19	116.44	108.45	95.97	80.82
Merged-chr12-25178012-3	chr12	25177915	25178115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48841.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	24.23	19.62	31.38	28.96	32.32	24.15	19.93	39.14	31.27	22.09	35.68	22.56
Merged-chr19-42639759-3	chr19	42639649	42639849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26943.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	33.92	28.67	43.93	49.07	53.18	41.71	30.89	38.8	40.12	30.63	39.19	30.7
Merged-chr7-19335835-3	chr7	19335752	19335952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-9219.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	23.82	26.91	35.94	29.76	21.68	40.45	15.61	23.22	52.52	44.19	55.27	35.4
Merged-chr11-93955912-3	chr11	93955778	93955978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077529)	promoter-TSS (NM_001077529)	-95.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	29.48	42.51	31.38	51.48	35.59	50.17	71.75	42.59	42.68	60.75	58.29	28.82
Merged-chr11-55013062-3	chr11	55012941	55013141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 3 of 24)	intron (NR_138556, intron 3 of 24)	20430.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	80.36	51.81	63.32	66.77	77.73	69.93	56.14	65.58	62.94	56.74	93.46	44.8
Merged-chr19-55218618-3	chr19	55218464	55218664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	22672.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	33.11	47.29	34.23	44.24	41.32	47.98	46.17	36.06	59.2	62.26	40.7	20.05
Merged-chr11-70525278-3	chr11	70525180	70525380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008946)	promoter-TSS (NM_008946)	-77.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	88.43	76.72	94.13	55.91	101.87	111.95	52.82	47.75	108.77	100.42	92.46	58.27
Merged-chr2-181273989-3	chr2	181273893	181274093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	13973.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	66.63	50.05	47.92	74.81	114.96	113.83	107.62	78.87	110.15	111.47	132.15	73.3
Merged-chr15-25896967-3	chr15	25896870	25897070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-36582.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	31.5	18.11	26.81	25.34	42.55	45.15	29.56	61.35	53.3	40.67	59.29	36.03
Merged-chr11-23255768-3	chr11	23255658	23255858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-283.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	304.87	324.47	341.13	362.38	393.97	408.27	367.71	385.01	434.09	463.95	569.31	316.71
Merged-chr1-88576400-3	chr1	88576336	88576536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24919.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	17.36	13.83	21.68	25.34	15.55	15.68	22.59	22.77	12.39	19.58	20.1	15.98
Merged-chr14-101608779-3	chr14	101608708	101608908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081278, exon 1 of 19)	5' UTR (NM_001081278, exon 1 of 19)	383.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	12.92	8.8	22.82	16.89	22.5	13.17	30.56	28.15	23.41	11.55	27.64	17.23
Merged-chr10-94090238-1	chr10	94090138	94090338	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	54237.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.83	4.28	1.14	3.62	4.09	0.31	2.99	2.3	14.16	22.09	24.12	15.35
Merged-chr4-129513604-3	chr4	129513509	129513709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010807)	promoter-TSS (NM_010807)	28.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	136.08	137.08	104.96	100.15	113.32	172.78	64.44	56.27	192.16	224.44	181.9	83.96
Merged-chr4-132611559-3	chr4	132611460	132611660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27486.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	71.88	93.82	63.89	10.05	93.68	179.36	65.11	35.22	132.76	132.56	101.5	31.64
Merged-chr13-18781443-3	chr13	18781370	18781570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	64178.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	41.19	31.94	35.37	46.66	31.5	37.94	43.85	54.73	35.99	42.18	49.24	27.57
Merged-chr2-120158304-3	chr2	120158202	120158402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-3727.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	42.4	31.69	33.66	33.38	33.96	31.36	36.54	42.34	40.32	26.61	29.14	26.63
Merged-chr12-84417294-3	chr12	84417186	84417386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025525)	promoter-TSS (NM_025525)	86.0	NM_025525	66381.0	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	23.02	30.18	14.83	14.08	25.77	28.54	34.21	19.6	52.91	39.16	33.67	24.75
Merged-chr1-62720349-3	chr1	62720205	62720405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16988.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	46.84	39.74	51.34	37.0	21.68	36.06	26.91	28.09	33.24	43.18	40.7	22.87
Merged-chr14-76081668-3	chr14	76081581	76081781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41|LTR|ERV1	29134.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	20.19	19.62	23.39	19.71	29.46	30.73	20.59	15.93	50.94	23.1	43.72	29.13
Merged-chr11-55453822-3	chr11	55453749	55453949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	7359.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	53.7	40.24	48.49	44.64	74.87	90.94	50.82	46.09	93.62	91.38	82.91	33.52
Merged-chr13-99323849-3	chr13	99323762	99323962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20816.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	56.13	41.5	63.32	64.75	104.32	136.09	97.99	89.33	99.92	102.43	134.67	50.12
Merged-chr8-106149177-3	chr8	106149066	106149266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1188.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	68.65	40.24	59.9	63.55	45.41	60.52	57.47	58.4	85.36	51.21	90.45	36.65
Merged-chr12-91384493-3	chr12	91384396	91384596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-87.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	113.87	98.6	138.62	158.06	159.14	169.33	130.21	222.03	207.7	196.32	325.61	138.46
Merged-chr10-94199031-3	chr10	94198946	94199146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	37.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	39.17	37.23	45.64	50.27	46.23	45.78	35.21	33.73	46.42	30.63	68.84	34.46
Merged-chr14-52279493-3	chr14	52279374	52279574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-79.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	201.9	196.19	205.93	222.82	202.51	270.61	187.68	245.55	255.1	246.03	314.55	166.97
Merged-chr12-91676124-3	chr12	91676025	91676225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-85638.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	25.04	18.36	35.37	18.5	20.46	31.36	23.92	27.84	29.7	23.6	30.15	15.98
Merged-chr12-73686967-3	chr12	73686865	73687065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102169.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	35.94	22.39	25.1	26.55	49.09	45.78	26.24	37.09	38.35	32.64	55.27	28.51
Merged-chr1-180848281-3	chr1	180848189	180848389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2862.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	35.94	45.02	47.92	56.71	57.27	91.56	40.86	60.95	64.51	64.77	87.93	42.29
Merged-chr1-80614845-3	chr1	80614741	80614941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	50511.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	31.09	21.38	27.38	22.93	31.09	34.81	23.25	23.24	30.49	31.13	37.18	17.23
Merged-chr11-84129575-3	chr11	84129446	84129646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172562)	promoter-TSS (NM_172562)	22.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	19.79	29.18	17.11	29.76	48.27	43.9	18.27	27.7	29.11	27.11	34.67	15.04
Merged-chr12-71864043-3	chr12	71863954	71864154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-25489.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	25.84	31.94	32.52	14.48	28.64	67.1	26.91	28.26	42.48	38.66	13.57	18.17
Merged-chr12-91668743-3	chr12	91668659	91668859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-78272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	123.16	108.16	134.63	128.3	135.41	150.2	135.53	141.06	111.52	89.88	143.21	57.64
Merged-chr14-27429535-3	chr14	27429428	27429628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028945, intron 1 of 23)	CpG	694.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	32.71	29.43	39.93	45.85	34.77	28.85	39.53	57.2	51.53	39.16	86.43	33.83
Merged-chr7-102019477-3	chr7	102019386	102019586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1331.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	111.04	130.29	114.66	42.23	134.6	258.38	170.4	84.45	147.91	154.15	138.69	40.72
Merged-chr6-53370134-3	chr6	53370022	53370222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 2 of 10)	intron (NM_001327821, intron 2 of 10)	82819.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	74.3	85.77	80.43	106.18	120.28	141.11	103.31	127.91	115.46	96.91	142.2	72.68
Merged-chr15-78174281-3	chr15	78174161	78174361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025931)	promoter-TSS (NM_025931)	-153.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	226.93	239.71	281.81	254.19	278.19	308.24	231.86	239.78	278.71	334.4	345.21	179.82
Merged-chr2-104110290-3	chr2	104110200	104110400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12469.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	14.54	20.63	25.67	26.14	49.91	47.04	24.25	40.09	9.24	3.51	20.1	11.28
Merged-chr13-9150158-3	chr13	9150063	9150263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 9 of 17)	intron (NM_172585, intron 9 of 17)	56282.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	71.88	59.11	78.15	41.83	65.05	134.84	89.35	61.63	69.43	63.77	42.21	20.68
Merged-chr18-73542192-3	chr18	73542089	73542289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30516.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	35.53	28.42	26.81	21.32	65.87	89.68	44.18	50.94	66.87	60.25	73.36	20.99
Merged-chr9-70834820-3	chr9	70834729	70834929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99979.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	73.89	74.96	81.58	57.92	61.77	101.28	61.78	99.48	88.12	80.84	115.07	72.99
Merged-chr15-81084062-3	chr15	81083968	81084168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	20979.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	33.92	18.61	60.47	33.78	40.91	55.5	58.13	68.16	29.5	25.11	52.26	33.21
Merged-chr9-65524151-3	chr9	65524036	65524236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55951.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	22.61	23.9	22.25	24.53	27.0	31.36	16.28	18.73	39.34	27.11	45.73	22.87
Merged-chr18-8376843-3	chr18	8376713	8376913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	507100.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	31.09	20.88	21.68	23.33	32.73	21.64	22.26	52.12	34.81	46.7	53.26	24.43
Merged-chr14-47374555-3	chr14	47374476	47374676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	716.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	91.26	95.83	103.82	125.49	144.82	167.76	161.77	174.9	151.06	136.07	174.86	111.21
Merged-chr12-91748394-3	chr12	91748289	91748489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38047.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	56.13	57.1	95.84	104.97	141.14	163.37	184.35	195.17	130.6	119.0	221.59	104.0
Merged-chr18-39802263-3	chr18	39802151	39802351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28754.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	30.69	34.21	31.95	27.35	41.32	74.32	28.23	37.63	62.55	75.82	59.29	18.8
Merged-chr8-84420706-2	chr8	84420606	84420806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	L1ME1|LINE|L1	5342.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	87.62	59.11	82.72	76.42	101.87	114.14	64.77	85.01	0.2	1.0	1.0	1.25
Merged-chr7-30094937-5	chr7	30094828	30095028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011981)	promoter-TSS (NM_011981)	-148.0	NM_011981	26466.0	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	16.96	12.07	13.69	21.72	11.45	18.81	22.26	13.43	24.59	22.09	28.64	33.83
Merged-chr7-75656655-3	chr7	75656536	75656736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-191702.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	50.47	44.27	31.95	26.95	66.68	97.21	61.45	56.27	56.65	64.77	51.76	21.62
Merged-chr5-16434798-3	chr5	16434697	16434897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-118698.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	19.38	15.85	44.5	35.39	40.91	32.61	46.84	59.83	51.73	42.68	77.38	34.15
Merged-chr10-93688480-3	chr10	93688390	93688590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5168.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	24.23	24.9	28.52	26.14	45.41	56.76	30.56	40.12	42.68	41.17	43.21	32.58
Merged-chrX-96130896-3	chrX	96130792	96130992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	34847.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	75.51	52.82	65.6	42.23	65.46	70.87	41.85	65.36	69.23	66.78	77.38	42.92
Merged-chr19-56721238-3	chr19	56721152	56721352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1120.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	44.01	24.65	26.24	19.31	35.18	56.76	26.57	31.23	36.39	54.23	37.18	19.11
Merged-chr12-76615033-3	chr12	76614913	76615113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 15 of 35)	ORR1D2|LTR|ERVL-MaLR	-67088.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	55.32	54.08	75.3	67.97	64.23	40.45	56.47	82.57	75.13	68.79	83.91	55.76
Merged-chr12-87266339-3	chr12	87266233	87266433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	-47.0	NM_001142581	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	101.35	103.13	84.43	90.49	106.37	102.54	77.06	108.48	104.64	97.91	133.66	77.69
Merged-chr7-90023194-3	chr7	90023099	90023299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5960.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	98.53	59.86	92.98	119.05	103.09	92.19	162.1	120.53	112.7	100.42	140.19	77.06
Merged-chr7-99380995-3	chr7	99380890	99381090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-528.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	54.11	40.5	105.53	65.56	59.73	88.43	49.49	71.64	76.12	71.3	88.44	53.26
Merged-chr10-59887536-3	chr10	59887401	59887601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	ID4|SINE|ID	7910.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	14.13	16.1	18.25	26.14	27.82	28.22	20.59	19.49	22.62	26.11	23.62	18.8
Merged-chr19-10843101-1	chr19	10843001	10843201	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023044, exon 1 of 8)	exon (NM_023044, exon 1 of 8)	557.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	21.0	23.14	45.07	28.96	23.32	40.76	13.95	20.33	44.65	51.72	34.17	28.51
Merged-chr17-27173874-3	chr17	27173779	27173979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6115.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	23.02	19.87	29.09	32.58	26.59	37.94	18.93	28.63	35.8	28.62	27.13	16.29
Merged-chr14-79301590-3	chr14	79301499	79301699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025427)	promoter-TSS (NM_025427)	36.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	24.63	21.13	27.95	24.13	14.32	42.33	27.57	30.14	29.7	17.07	34.67	29.13
Merged-chr7-118855762-3	chr7	118855639	118855839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	-36.0	NM_001081446	434232.0	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	52.49	53.07	46.78	71.19	62.18	69.93	35.54	55.63	95.79	104.44	129.64	49.81
Merged-chr11-115512891-3	chr11	115512793	115512993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1500.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	54.51	64.14	78.15	74.81	48.68	67.1	31.56	65.02	75.53	46.19	75.37	34.77
Merged-chr16-36530823-3	chr16	36530722	36530922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	31312.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	37.15	26.41	62.75	57.51	43.36	47.98	48.16	58.99	35.8	33.14	84.42	36.65
Merged-chr10-12868295-3	chr10	12868216	12868416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6581.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	22.21	19.12	31.95	34.99	27.82	31.98	28.23	27.39	30.09	22.59	37.69	27.57
Merged-chr17-45555611-3	chr17	45555510	45555710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-90.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	121.95	145.38	123.79	125.49	161.19	200.69	102.64	91.99	181.35	173.23	153.76	118.73
Merged-chr2-91483654-3	chr2	91483547	91483747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 16 of 37)	B3|SINE|B2	26116.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	19.79	21.63	14.26	7.64	27.41	17.87	10.96	22.32	31.27	15.57	30.15	15.98
Merged-chr9-59731308-3	chr9	59731220	59731420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19329.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	56.94	57.85	56.48	26.95	61.37	73.06	47.5	50.07	66.09	47.7	65.32	41.66
Merged-chr1-156680913-3	chr1	156680812	156681012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-6573.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	107.41	87.78	136.91	141.98	114.96	111.0	105.63	146.97	29.31	19.08	48.74	35.4
Merged-chr1-170162021-2	chr1	170161921	170162121	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12943.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	3.23	3.02	4.56	5.63	25.77	14.74	19.6	34.26	17.51	20.59	27.64	15.98
Merged-chr12-21336029-3	chr12	21335937	21336137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19645.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	85.2	91.56	100.97	73.6	97.78	132.64	51.15	73.79	162.27	139.08	143.71	68.92
Merged-chr14-32281779-3	chr14	32281664	32281864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011960, intron 15 of 17)	intron (NM_011960, intron 15 of 17)	-40255.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	56.13	29.68	48.49	45.05	37.64	50.17	49.49	52.32	36.58	36.15	52.26	27.57
Merged-chr4-130800280-3	chr4	130800178	130800378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7741.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	131.23	107.4	151.17	163.7	146.46	173.09	150.14	157.29	154.01	178.75	246.22	120.61
Merged-chr2-174327638-5	chr2	174327533	174327733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-135.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	23.82	24.4	18.25	19.71	32.32	36.69	17.94	17.55	31.08	37.66	24.12	25.06
Merged-chr14-31001569-3	chr14	31001484	31001684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026911)	promoter-TSS (NM_026911)	82.0	NM_026911	69019.0	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	27.86	38.99	40.5	38.21	42.14	40.76	39.53	23.58	38.75	41.67	39.7	40.41
Merged-chr4-123921309-3	chr4	123921223	123921423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	3890.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	59.36	55.34	75.3	61.94	52.37	88.43	63.11	71.24	85.17	66.28	94.97	65.16
Merged-chr3-90081620-4	chr3	90081535	90081735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	2114.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	39.57	26.41	42.21	34.19	47.87	49.54	33.55	31.74	36.58	52.72	47.74	36.97
Merged-chr11-50210291-3	chr11	50210202	50210402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290769, intron 1 of 7)	CpG	518.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	131.23	151.67	106.1	117.84	98.18	194.1	103.31	111.31	182.92	202.35	195.97	101.81
Merged-chr1-151428531-3	chr1	151428415	151428615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025819)	promoter-TSS (NM_025819)	-27.0	NM_026876	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	235.82	236.69	252.71	251.37	272.87	332.39	210.93	295.18	256.28	303.77	353.25	191.41
Merged-chr15-100084163-3	chr15	100084048	100084248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	45484.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	41.59	45.02	51.91	51.08	64.64	60.21	48.83	76.82	58.61	35.65	78.39	41.35
Merged-chr11-29173514-3	chr11	29173387	29173587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134034, intron 1 of 15)	CpG	580.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	21.0	19.12	22.25	14.88	33.96	28.22	25.24	24.25	28.52	22.09	37.69	21.93
Merged-chr19-32179752-3	chr19	32179650	32179850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31263.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	56.53	48.29	50.2	32.18	85.91	126.68	51.15	52.35	79.46	91.89	62.81	30.7
Merged-chr5-112280340-3	chr5	112280224	112280424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	MIR3|SINE|MIR	3633.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	67.84	61.12	85.0	103.37	63.0	56.44	89.35	105.0	74.15	70.29	105.02	73.62
Merged-chr18-66478329-3	chr18	66478239	66478439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19735.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	117.5	118.47	126.07	131.12	100.64	142.05	108.29	108.7	142.99	179.25	177.38	99.62
Merged-chr7-83722654-3	chr7	83722543	83722743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360087, exon 2 of 19)	exon (NM_001360087, exon 2 of 19)	9755.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	58.15	49.05	63.32	69.18	48.27	41.71	44.18	63.17	50.75	40.17	69.34	32.58
Merged-chr2-71344098-3	chr2	71344010	71344210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	23444.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	20.59	20.63	22.82	23.73	38.05	26.03	23.25	34.96	42.88	39.67	38.19	17.54
Merged-chr5-129584039-3	chr5	129583937	129584137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011846)	promoter-TSS (NM_011846)	-132.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	40.78	39.99	29.66	34.19	29.05	45.15	53.15	36.06	25.18	41.17	42.71	37.28
Merged-chr4-88794471-2	chr4	88794363	88794563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161609).6	promoter-TSS (NM_001161609).6	-24.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	32.71	35.21	44.5	35.39	0.0	0.0	0.0	0.11	16.52	15.06	23.11	18.17
Merged-chr10-19009562-3	chr10	19009453	19009653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	2410.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	220.47	197.2	198.52	127.5	218.46	282.22	116.92	116.86	219.31	218.92	219.58	110.27
Merged-chr10-118866637-3	chr10	118866513	118866713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2290.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	17.36	14.09	19.4	18.5	33.14	55.19	42.85	22.23	41.5	43.68	38.69	11.9
Merged-chr11-119709436-3	chr11	119709330	119709530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106525.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	35.94	46.03	56.48	46.66	55.23	44.21	43.18	48.25	38.35	38.16	58.79	32.58
Merged-chrX-38189762-3	chrX	38189640	38189840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079513)	promoter-TSS (NM_001079513)	-53.0	NM_020256	56805.0	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	43.61	33.45	53.05	36.2	43.77	40.14	27.9	36.87	48.39	31.63	50.75	35.4
Merged-chr10-80742385-3	chr10	80742276	80742476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-101.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	157.88	153.43	176.27	145.19	171.82	253.99	135.19	156.08	216.55	239.0	281.39	146.61
Merged-chr11-32455225-5	chr11	32455143	32455343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361561)	promoter-TSS (NM_001361561)	-127.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	52.09	54.83	39.36	50.68	60.55	82.16	81.38	60.0	53.7	75.32	68.34	33.83
Merged-chr3-58692320-3	chr3	58692188	58692388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045167)	promoter-TSS (NR_045167)	100.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	123.97	131.55	113.52	129.11	111.69	148.32	139.84	126.39	112.7	136.57	126.12	102.44
Merged-chr12-83689113-3	chr12	83689007	83689207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	544.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	24.23	13.58	31.95	17.29	25.36	35.43	25.24	31.21	38.94	47.2	33.67	23.49
Merged-chr13-3406834-3	chr13	3406739	3406939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71464.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	28.27	33.96	37.65	49.07	47.05	47.35	22.92	28.74	50.75	58.75	52.76	25.37
Merged-chr1-105790516-4	chr1	105790406	105790606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	9783.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	40.78	42.51	34.8	41.43	31.09	19.44	46.84	34.6	36.98	47.2	40.7	26.94
Merged-chr2-142611336-3	chr2	142611241	142611441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	290123.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	123.97	94.57	86.14	96.93	101.87	84.35	106.63	161.5	111.52	105.94	177.38	62.34
Merged-chr5-135078304-3	chr5	135078218	135078418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199677)	promoter-TSS (NM_001199677)	-52.0	NM_001199677	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	38.36	22.13	27.95	24.53	30.68	37.0	17.61	29.94	47.8	53.73	44.72	18.48
Merged-chr19-60811623-3	chr19	60811542	60811742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	87.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	65.82	68.16	82.15	67.57	83.46	83.72	121.24	84.84	69.04	76.82	83.91	52.94
Merged-chr2-38286096-3	chr2	38286011	38286211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	1273.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	43.61	21.63	22.82	27.35	61.77	84.98	90.02	59.92	64.71	48.2	50.25	35.4
Merged-chr13-105291990-3	chr13	105291887	105292087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	1027.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	24.23	42.51	66.17	53.49	33.14	22.26	36.54	50.86	42.68	33.14	28.64	25.37
Merged-chr2-126934248-3	chr2	126934122	126934322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	-987.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	55.72	70.18	71.31	34.59	55.64	87.8	46.84	43.07	70.22	58.75	48.74	28.82
Merged-chr5-92279939-3	chr5	92279842	92280042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1761.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	32.3	24.4	37.65	37.0	34.36	37.32	19.6	33.34	47.4	25.11	39.19	21.62
Merged-chr11-75170505-3	chr11	75170412	75170612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010430)	promoter-TSS (NM_010430)	-257.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	31.09	29.68	41.07	33.38	28.64	34.49	44.51	33.34	59.01	67.28	81.4	36.97
Merged-chr11-78826558-3	chr11	78826457	78826657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001076681)	promoter-TSS (NM_001076681)	-38.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	66.63	61.62	35.94	43.44	60.96	63.66	26.24	39.53	72.77	85.36	60.8	68.29
Merged-chr13-44731243-3	chr13	44731141	44731341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	-30.0	NM_001360281	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	31.09	21.88	29.66	28.96	29.05	55.5	14.62	23.16	55.66	59.25	48.24	23.49
Merged-chr10-121365444-1	chr10	121365344	121365544	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	CpG	354.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	24.63	25.4	19.97	24.13	26.18	38.57	22.59	22.49	44.06	35.65	47.23	26.31
Merged-chr18-65693743-3	chr18	65693643	65693843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4525.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	81.57	55.59	98.69	118.65	102.68	106.61	117.59	123.95	71.2	82.35	120.6	51.69
Merged-chr18-49850525-3	chr18	49850425	49850625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081371, intron 5 of 42)	intron (NM_001081371, intron 5 of 42)	17528.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	23.42	25.91	36.51	21.32	24.55	34.49	28.9	44.58	36.78	33.14	52.76	30.07
Merged-chr11-120378779-3	chr11	120378686	120378886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027980)	promoter-TSS (NM_027980)	-40.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	93.68	90.05	78.15	45.05	110.87	113.2	46.84	88.18	115.06	136.07	112.05	59.83
Merged-chr4-43578664-3	chr4	43578576	43578776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-59.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	50.88	33.7	53.62	36.6	61.37	57.7	30.56	53.22	46.22	47.2	70.35	41.04
Merged-chr14-63543886-3	chr14	63543774	63543974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177594)	promoter-TSS (NM_177594)	79.0	NM_177594	210376.0	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	24.63	28.42	34.8	36.6	30.68	44.84	44.84	26.92	18.49	37.66	23.11	29.76
Merged-chr1-165737657-3	chr1	165737572	165737772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26086.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	29.48	26.66	40.5	43.04	39.27	46.72	33.55	54.31	55.27	59.75	61.81	27.25
Merged-chr6-81958234-2	chr6	81958136	81958336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177884, exon 17 of 17)	3' UTR (NM_177884, exon 17 of 17)	7713.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	19.79	18.61	31.38	32.98	26.18	36.69	29.9	62.02	3.34	0.5	9.55	3.45
Merged-chr5-9104121-3	chr5	9104032	9104232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3395.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	22.21	23.64	18.25	24.94	29.05	19.13	20.93	29.61	26.75	19.58	34.67	16.6
Merged-chr4-101155718-3	chr4	101155619	101155819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86681.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	78.34	56.59	85.0	66.36	82.23	96.58	76.4	100.63	94.41	88.37	123.11	71.42
Merged-chr1-107489840-3	chr1	107489742	107489942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21581.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	19.38	17.1	50.2	41.83	25.36	19.44	24.91	48.39	48.58	35.15	36.68	18.48
Merged-chr15-99342815-3	chr15	99342731	99342931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	27651.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	36.75	51.81	34.23	20.91	51.14	92.82	25.24	18.56	46.42	37.66	29.65	17.23
Merged-chr13-63815311-3	chr13	63815226	63815426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023507)	promoter-TSS (NM_023507)	86.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	223.3	190.16	205.93	188.63	193.1	224.83	109.28	203.61	241.34	284.19	254.26	192.03
Merged-chr1-36556748-3	chr1	36556639	36556839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	818.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	87.22	66.65	85.57	67.17	98.59	116.65	83.71	83.8	107.2	111.47	135.67	52.0
Merged-chr4-147868646-3	chr4	147868544	147868744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010244)	promoter-TSS (NM_010244)	75.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	329.5	263.6	351.97	360.37	332.6	336.46	293.31	320.47	382.36	409.72	468.82	248.73
Merged-chr5-139479270-3	chr5	139479187	139479387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133349, intron 3 of 6)	intron (NM_133349, intron 3 of 6)	5204.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	31.9	26.91	37.08	6.84	36.82	62.09	29.23	42.08	25.18	22.09	11.56	23.18
Merged-chr13-113591529-3	chr13	113591422	113591622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_130796)	TTS (NM_130796)	27042.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	94.89	38.99	114.66	138.36	128.87	115.71	160.11	149.38	121.95	114.48	212.05	90.53
Merged-chr8-119432429-3	chr8	119432343	119432543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4719.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	31.9	45.28	41.64	20.11	50.73	72.75	45.51	45.03	61.56	47.2	47.74	19.74
Merged-chr14-104522327-1	chr14	104522227	104522427	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026047, intron 1 of 5)	CpG	339.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	18.57	14.59	9.13	12.47	35.18	21.32	25.58	20.5	18.29	15.57	18.09	15.35
Merged-chr19-8888799-3	chr19	8888696	8888896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025463)	promoter-TSS (NM_025463)	-22.0	NR_039598	100628605.0		NR_039598	ENSMUSG00000093314	Mir5136	mmu-mir-5136|mu-mir-5136	microRNA 5136	ncRNA	130.43	119.98	88.99	95.32	129.69	163.06	64.11	87.39	122.34	130.55	149.74	64.22
Merged-chr2-75685601-3	chr2	75685498	75685698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	19065.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	112.26	101.62	140.9	110.2	120.28	140.79	96.99	130.79	132.37	141.09	150.24	93.67
Merged-chr4-156203144-3	chr4	156203043	156203243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-141.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	138.1	118.97	158.02	129.51	159.55	174.97	92.68	136.01	184.69	142.1	199.99	104.0
Merged-chr7-19094654-3	chr7	19094562	19094762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190491)	TTS (NM_001190491)	118.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	43.21	31.44	30.23	20.11	34.77	65.54	19.27	19.68	70.81	58.24	48.74	20.05
Merged-chr6-142345743-3	chr6	142345550	142345750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183165)	promoter-TSS (NM_183165)	-47.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	67.03	84.26	41.64	65.16	46.64	76.83	74.07	50.97	68.45	61.76	65.32	43.23
Merged-chr8-105758660-3	chr8	105758567	105758767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-60.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	36.75	28.93	31.95	26.55	36.41	42.65	22.26	37.4	35.21	39.67	40.7	25.06
Merged-chr9-35050767-1	chr9	35050667	35050867	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.85	5.03	6.85	2.01	8.18	11.6	13.29	15.08	9.44	15.06	10.05	11.59
Merged-chr19-7040111-3	chr19	7040008	7040208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016737)	promoter-TSS (NM_016737)	-82.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	255.2	234.17	293.21	240.92	265.51	359.67	195.32	217.04	282.84	322.85	360.78	220.23
Merged-chr18-74778966-4	chr18	74778880	74779080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-232.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	75.91	68.16	71.31	68.78	68.73	94.7	77.73	69.79	77.3	63.77	96.48	55.13
Merged-chr17-17837976-1	chr17	17837876	17838076	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162909, intron 6 of 8)	intron (NM_001162909, intron 6 of 8)	7001.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	83.59	73.95	20.54	38.61	71.59	130.13	54.81	57.06	107.79	141.59	139.19	51.06
Merged-chr9-96670001-3	chr9	96669904	96670104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38501.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	69.05	60.37	59.33	54.7	82.23	94.07	63.78	75.14	73.76	71.8	99.49	43.54
Merged-chr5-121385670-3	chr5	121385591	121385791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-76.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	98.12	83.26	87.85	64.35	105.14	113.2	59.13	64.65	103.46	128.54	114.57	63.28
Merged-chr10-7667539-3	chr10	7667459	7667659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145706)	promoter-TSS (NM_145706)	55.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	47.65	28.42	23.39	32.18	46.64	48.92	35.87	57.45	38.16	45.19	53.77	26.31
Merged-chr2-127336074-3	chr2	127336024	127336224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-35.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	171.21	174.31	159.73	103.77	108.82	253.05	108.62	111.51	234.85	258.08	230.64	121.86
Merged-chr3-109267176-3	chr3	109267075	109267275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	29.48	19.37	27.38	50.68	87.55	59.89	45.51	51.93	35.21	40.17	37.69	23.81
Merged-chr2-3475044-3	chr2	3474945	3475145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-59.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	132.44	114.45	112.95	148.81	130.5	160.55	98.32	137.16	156.56	123.02	216.57	96.49
Merged-chr3-136326056-3	chr3	136325941	136326141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310749)	promoter-TSS (NM_001310749)	25.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	81.57	86.78	124.93	119.45	57.27	58.95	82.38	92.97	76.31	51.72	101.5	46.99
Merged-chr4-126468710-3	chr4	126468596	126468796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317173)	promoter-TSS (NM_001317173)	-113.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	74.3	92.56	73.59	59.93	114.55	127.0	45.84	89.08	103.85	92.89	121.1	67.67
Merged-chr13-17695032-3	chr13	17694943	17695143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	-278.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	265.29	242.22	292.07	265.45	333.83	353.4	268.06	346.35	387.48	344.44	459.77	220.85
Merged-chr10-25285235-3	chr10	25285121	25285321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	13942.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	21.8	22.64	43.35	26.55	35.18	21.95	21.26	41.64	40.91	29.62	37.69	29.76
Merged-chr2-132599290-3	chr2	132599166	132599366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	1070.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	86.01	92.81	116.94	102.56	148.91	149.89	141.17	123.65	141.81	172.22	185.92	104.0
Merged-chr19-29239716-3	chr19	29239624	29239824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-12079.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	37.55	40.24	37.65	8.45	31.91	51.11	21.59	28.35	65.3	54.23	59.8	18.17
Merged-chr13-23729194-3	chr13	23729112	23729312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9595.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	19.38	23.14	17.68	44.64	15.14	19.44	23.58	27.7	21.44	20.08	20.6	25.69
Merged-chr6-127472251-3	chr6	127472147	127472347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181402, intron 4 of 8)	intron (NM_181402, intron 4 of 8)	18620.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	76.72	61.12	50.2	65.16	76.09	70.87	46.5	77.61	76.71	57.74	92.46	41.35
Merged-chr15-72971993-3	chr15	72971891	72972091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 8 of 21)	ORR1D2|LTR|ERVL-MaLR	83821.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	39.57	28.67	59.9	48.26	48.27	41.39	47.17	62.55	62.74	42.18	57.79	34.46
Merged-chr11-55097866-3	chr11	55097731	55097931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010299)	promoter-TSS (NM_010299)	-154.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	165.96	196.69	208.79	155.65	200.46	227.97	128.22	143.19	208.49	251.05	244.71	132.83
Merged-chr5-149051966-4	chr5	149051854	149052054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	-338.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	30.69	27.67	33.09	18.1	33.14	31.36	14.95	25.88	58.81	54.73	53.26	34.15
Merged-chr11-78535495-3	chr11	78535384	78535584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018854)	promoter-TSS (NM_018854)	776.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	46.44	36.47	41.64	32.98	37.64	41.39	29.23	42.22	59.6	45.69	48.74	49.81
Merged-chr11-11462045-3	chr11	11461933	11462133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001185153, intron 1 of 7)	CpG	386.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	59.36	68.67	62.18	63.95	61.77	68.67	58.46	77.33	118.6	140.09	149.74	93.67
Merged-chr2-124751999-3	chr2	124751893	124752093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98412.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	18.98	13.33	27.95	19.71	19.23	22.26	15.28	25.85	21.05	16.07	25.12	20.99
Merged-chr3-59262933-3	chr3	59262837	59263037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	48.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	36.75	24.65	71.88	34.19	52.37	53.93	42.85	63.28	55.66	17.57	49.75	23.18
Merged-chr10-21947134-3	chr10	21947025	21947225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-31547.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	141.33	120.98	94.13	62.74	133.37	223.58	119.58	91.09	154.01	153.64	154.26	58.89
Merged-chr5-31727666-3	chr5	31727566	31727766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	29616.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	66.22	46.78	38.79	78.83	60.55	66.48	37.2	67.63	83.59	102.93	105.52	50.12
Merged-chr17-28801672-3	chr17	28801575	28801775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081315, intron 1 of 12)	CpG	549.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	59.76	47.04	65.03	49.07	86.32	92.19	43.85	57.17	93.62	87.37	115.57	54.2
Merged-chr13-92899801-1	chr13	92899701	92899901	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	55014.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.5	12.0	3.01	14.57	4.39
Merged-chr19-17345063-3	chr19	17344939	17345139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-5534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	37.55	43.26	57.05	24.94	42.55	40.14	33.55	47.44	67.46	48.7	63.31	33.83
Merged-chr8-115707935-3	chr8	115707852	115708052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1058.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	84.8	74.7	58.19	83.66	93.28	103.79	43.85	80.24	107.79	95.4	123.11	79.26
Merged-chr18-75245087-2	chr18	75244990	75245190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	52227.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	25.84	18.11	38.79	41.02	17.18	16.93	38.2	60.59	8.26	0.5	11.05	5.33
Merged-chr4-58912721-3	chr4	58912602	58912802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	47.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	35.53	26.16	21.68	34.59	33.55	25.09	27.9	32.36	22.82	24.1	35.68	28.19
Merged-chr2-32727578-3	chr2	32727498	32727698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252547)	promoter-TSS (NM_001252547)	-91.0	NM_001252547	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	87.22	71.94	68.45	83.26	105.14	128.88	70.42	96.48	115.26	100.42	135.17	49.5
Merged-chr11-86358362-3	chr11	86358257	86358457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	-832.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	83.59	69.42	74.73	49.87	81.41	97.52	37.54	69.28	103.65	90.88	73.86	48.56
Merged-chr8-26961888-3	chr8	26961775	26961975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15461.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	16.56	13.58	28.52	14.08	24.96	38.26	21.92	31.88	28.52	43.18	24.12	19.11
Merged-chr17-3081847-3	chr17	3081726	3081926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	2357.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	40.38	50.31	40.5	39.82	109.64	101.91	96.33	85.12	28.72	25.61	28.64	26.94
Merged-chr7-19501136-3	chr7	19501036	19501236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	7195.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	78.34	60.12	79.86	62.74	107.59	122.61	68.76	90.51	120.37	102.93	93.46	69.86
Merged-chr2-160214298-2	chr2	160214204	160214404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113190.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	18.17	18.61	17.68	12.87	23.32	23.2	22.26	20.69	11.41	21.59	24.12	17.23
Merged-chr16-20535384-3	chr16	20535282	20535482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-98.0	NM_001302970	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	245.1	236.18	257.85	257.41	238.51	304.48	188.67	234.7	224.62	276.66	278.38	145.98
Merged-chr8-120572800-3	chr8	120572696	120572896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198671, exon 11 of 16)	exon (NM_198671, exon 11 of 16)	16279.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	36.75	13.08	16.54	22.93	39.68	17.25	32.22	36.7	25.96	25.61	26.63	16.29
Merged-chr3-121693201-1	chr3	121693101	121693301	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22438.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	8.08	19.12	21.11	14.88	18.0	19.13	21.59	21.56	17.51	25.11	25.12	19.74
Merged-chr10-79539083-3	chr10	79538992	79539192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5305.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	47.24	21.88	41.07	47.06	24.96	30.1	22.92	47.69	35.8	23.1	39.7	21.62
Merged-chr4-44072650-3	chr4	44072554	44072754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	63.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	88.03	90.55	78.15	76.02	104.32	87.17	56.47	84.73	101.29	92.39	96.98	49.18
Merged-chr2-20898905-3	chr2	20898789	20898989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68832.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	45.23	33.45	30.8	31.37	24.14	26.03	18.6	27.48	39.34	19.08	34.67	15.66
Merged-chr14-7914050-3	chr14	7913943	7914143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081427, intron 25 of 45)	intron (NM_001081427, intron 25 of 45)	80139.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	37.96	27.67	31.38	25.74	28.64	63.97	45.84	55.4	54.29	44.69	54.27	35.09
Merged-chr14-31188893-3	chr14	31188803	31189003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17923.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	73.89	65.65	110.1	81.24	85.09	130.13	83.04	89.24	105.23	93.89	111.05	70.8
Merged-chr5-134314862-3	chr5	134314726	134314926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080749)	promoter-TSS (NM_001080749)	-66.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	64.61	50.05	49.63	50.68	68.73	41.39	35.54	43.6	68.84	56.74	74.37	36.34
Merged-chr2-79698426-3	chr2	79698310	79698510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9370.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	44.42	19.37	44.5	20.11	62.59	42.33	59.79	62.41	59.4	53.73	72.86	49.5
Merged-chr3-51340290-3	chr3	51340224	51340424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	CpG	320.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	23.42	31.19	11.98	11.26	39.27	34.49	32.22	20.8	41.7	25.11	34.67	23.18
Merged-chr12-24975008-3	chr12	24974913	24975113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	81.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	48.05	59.11	58.76	34.59	41.73	56.44	47.17	43.51	58.42	58.24	62.31	38.22
Merged-chr18-62169541-3	chr18	62169492	62169692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10389.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	41.99	19.87	14.26	27.75	22.5	30.1	27.24	41.61	23.01	25.61	27.13	22.24
Merged-chr10-16997013-3	chr10	16996900	16997100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	98782.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	95.7	112.68	99.83	117.04	88.37	105.99	86.7	127.32	137.68	135.57	137.68	76.44
Merged-chr3-153566314-3	chr3	153566206	153566406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	Lx8b|LINE|L1	158827.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	33.11	32.7	47.35	48.67	56.05	51.43	30.23	74.52	61.37	50.21	77.38	42.29
Merged-chr5-111115901-3	chr5	111115786	111115986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	111742.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	29.88	16.6	18.83	24.94	27.0	19.13	25.24	31.32	19.28	17.57	27.13	21.62
Merged-chr7-25659116-3	chr7	25659027	25659227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138586)	promoter-TSS (NM_138586)	-26.0	NM_138586	27998.0	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	149.4	141.86	111.81	121.46	123.14	211.03	100.32	129.22	175.45	205.36	176.87	100.25
Merged-chr6-3498433-3	chr6	3498347	3498547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024260)	promoter-TSS (NM_024260)	54.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	47.24	46.28	46.78	58.32	53.59	68.67	54.48	73.74	47.8	66.28	87.93	41.66
Merged-chr7-28382073-3	chr7	28381966	28382166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2838.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	240.66	223.11	228.18	167.32	279.01	326.43	185.68	175.82	272.81	318.84	329.13	131.57
Merged-chr2-158136461-3	chr2	158136357	158136557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	9935.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	47.24	57.6	75.3	61.13	73.64	116.02	179.04	115.71	95.2	83.35	143.71	74.24
Merged-chr8-31150283-3	chr8	31150168	31150368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-48.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	110.64	114.95	69.6	98.54	101.05	85.92	76.4	85.82	179.97	172.72	170.34	98.68
Merged-chr17-8506252-1	chr17	8506152	8506352	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20549.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	7.67	6.04	2.28	19.31	44.18	17.25	19.27	22.15	2.75	4.02	2.51	0.31
Merged-chr6-125164822-3	chr6	125164709	125164909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289726, intron 2 of 6)	CpG	964.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	37.15	29.93	52.48	40.62	43.77	63.34	36.21	48.95	73.76	53.22	53.77	37.59
Merged-chr12-75449087-3	chr12	75449017	75449217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32336.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	20.19	18.11	33.09	30.16	30.27	26.97	19.6	41.75	26.16	23.6	30.15	17.23
Merged-chr9-25481527-3	chr9	25481437	25481637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026189)	promoter-TSS (NM_026189)	-60.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	125.98	141.86	165.43	154.85	138.69	189.4	150.14	161.36	202.39	153.64	269.83	135.02
Merged-chr16-4894377-3	chr16	4894261	4894461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8261.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	24.63	17.61	27.95	15.69	23.73	39.82	20.93	21.0	33.83	42.18	28.64	15.04
Merged-chr17-73941954-3	chr17	73941852	73942052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8244.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	21.0	20.37	23.96	32.58	42.14	42.65	42.19	56.24	51.73	36.15	49.75	18.8
Merged-chr4-108834353-6	chr4	108834279	108834479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	-77.0	NM_001356361	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	10.5	23.39	7.99	18.1	15.14	15.68	15.94	10.93	21.24	30.63	34.17	23.81
Merged-chr10-60367247-3	chr10	60367144	60367344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 4 of 6)	(CCCCCT)n|Simple_repeat|Simple_repeat	20393.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	39.17	27.17	55.9	51.48	58.91	47.04	67.1	80.78	45.63	36.65	57.79	42.6
Merged-chr17-27556923-3	chr17	27556811	27557011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166537, exon 1 of 5)	5' UTR (NM_001166537, exon 1 of 5)	258.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	36.75	36.47	32.52	35.39	45.82	43.9	14.62	28.26	46.42	29.12	52.76	30.07
Merged-chr9-59727623-3	chr9	59727526	59727726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	19862.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	39.17	30.94	37.08	33.38	51.14	36.06	24.58	50.75	45.63	41.17	67.33	42.92
Merged-chrX-95957065-3	chrX	95956984	95957184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152822)	promoter-TSS (NM_152822)	-110.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	90.05	114.95	108.39	124.28	69.96	105.67	113.93	78.45	150.86	159.67	162.8	110.27
Merged-chr12-28751768-3	chr12	28751615	28751815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201357)	promoter-TSS (NM_201357)	-113.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	60.57	77.47	85.0	76.42	87.55	91.88	84.7	81.39	67.46	54.73	94.47	40.1
Merged-chr1-155070633-3	chr1	155070528	155070728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	12636.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	58.15	43.51	42.21	68.37	67.09	52.99	55.8	69.34	66.28	53.73	85.42	47.3
Merged-chr10-127642945-3	chr10	127642862	127643062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-24.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	81.97	91.3	63.32	64.35	90.82	100.03	64.11	82.63	105.03	120.51	149.74	69.55
Merged-chr6-133105648-3	chr6	133105539	133105739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163445, exon 1 of 1)	3' UTR (NM_001163445, exon 1 of 1)	400.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	57.74	71.18	38.79	67.57	60.55	63.97	73.74	60.31	58.42	42.68	74.87	29.45
Merged-chr16-23993414-3	chr16	23993313	23993513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4561.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	90.05	72.19	90.7	99.75	56.46	86.86	52.82	62.41	60.58	53.22	74.37	35.09
Merged-chr12-79141624-3	chr12	79141513	79141713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	MMAR1|DNA|TcMar-Mariner	10825.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	20.19	15.09	11.41	5.63	58.5	78.08	86.03	89.3	31.67	22.59	35.17	14.72
Merged-chr3-89430299-3	chr3	89430205	89430405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293763)	promoter-TSS (NM_001293763)	91.0	NM_001293763	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	141.73	109.16	148.89	141.17	148.5	169.33	109.62	176.89	130.6	145.61	221.09	78.32
Merged-chr9-85577562-3	chr9	85577468	85577668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	171766.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	29.07	33.45	23.96	29.36	41.73	41.08	15.28	36.34	43.86	35.65	28.14	22.87
Merged-chr8-122564769-6	chr8	122564673	122564873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3242.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	26.25	21.38	27.38	34.19	24.96	38.88	27.9	28.04	37.76	48.7	25.12	28.82
Merged-chr9-51009178-3	chr9	51009076	51009276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-103.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	165.96	196.69	173.42	178.58	208.23	242.71	146.82	187.01	245.07	221.43	299.98	123.11
Merged-chr6-127163057-3	chr6	127162967	127163167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-12019.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	94.49	80.49	95.84	84.06	111.28	124.8	78.06	109.35	158.14	96.4	166.82	64.53
Merged-chr14-55106562-3	chr14	55106460	55106660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	33.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	24.23	21.63	38.22	50.27	38.46	50.8	26.24	36.25	36.19	29.62	64.32	36.97
Merged-chr7-141265001-3	chr7	141264923	141265123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252601, intron 4 of 9)	intron (NM_001252601, intron 4 of 9)	1401.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	38.76	26.41	54.19	33.78	29.86	26.97	25.24	31.21	28.91	25.61	38.19	29.45
Merged-chr10-108185440-3	chr10	108185336	108185536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	23036.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	29.48	14.34	36.51	27.35	29.05	32.3	46.17	62.97	43.66	42.68	64.32	34.15
Merged-chr10-122047821-3	chr10	122047733	122047933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	-518.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	19.38	16.1	20.54	24.13	14.32	20.07	18.93	21.98	27.93	23.6	43.72	19.11
Merged-chr11-54156079-3	chr11	54155980	54156180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	55156.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	40.78	44.77	32.52	59.12	56.87	59.58	39.2	53.13	56.25	42.68	65.83	45.42
Merged-chr11-6546691-4	chr11	6546554	6546754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190343)	promoter-TSS (NM_001190343)	-233.0	NM_146014	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	46.03	65.65	49.06	55.1	41.32	42.33	69.42	45.34	62.15	88.87	44.22	62.03
Merged-chr15-96466675-3	chr15	96466573	96466773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-5830.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	25.84	27.67	19.4	29.36	59.32	83.1	51.15	67.71	28.52	32.64	34.67	15.98
Merged-chr7-45395810-3	chr7	45395714	45395914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-72.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	196.65	176.32	202.51	184.21	249.55	287.86	132.2	209.66	241.53	319.34	256.77	172.92
Merged-chr6-115463141-3	chr6	115463044	115463244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001127330, exon 6 of 8)	exon (NM_001127330, exon 6 of 8)	41078.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	32.71	23.9	37.65	40.22	49.5	40.45	46.84	68.69	40.91	35.15	30.15	36.65
Merged-chr5-74671655-1	chr5	74671555	74671755	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	6217.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.0	1.14	0.8	42.14	32.61	20.26	25.68	0.0	0.0	0.0	0.94
Merged-chr8-91134091-3	chr8	91133928	91134128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302337)	promoter-TSS (NM_001302337)	-1.0	NM_001302268	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	226.13	174.56	261.27	197.48	268.37	314.51	219.23	285.03	254.51	276.16	389.42	175.43
Merged-chr2-127079660-3	chr2	127079569	127079769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	9012.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	42.8	31.69	39.36	72.8	60.96	42.02	33.22	31.54	27.14	27.62	28.64	16.29
Merged-chrX-101429572-3	chrX	101429486	101429686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252518)	promoter-TSS (NM_001252518)	-65.0	NM_023144	53610.0	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	71.07	90.8	66.74	85.67	76.09	79.02	60.12	66.36	89.49	99.42	81.9	52.32
Merged-chr11-102309129-3	chr11	102309031	102309231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001044383, intron 12 of 19)	CpG	8156.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	123.97	88.54	122.65	102.96	82.23	103.79	50.16	78.65	128.83	115.48	126.12	85.84
Merged-chr17-26715546-3	chr17	26715427	26715627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029870)	promoter-TSS (NM_029870)	-123.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	120.73	118.22	128.92	106.18	122.73	159.61	78.72	104.69	189.61	189.29	153.76	106.2
Merged-chr1-164248918-3	chr1	164248813	164249013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-133.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	173.63	171.54	201.37	187.02	275.74	275.32	219.9	256.94	321.98	306.79	397.97	180.13
Merged-chr14-60265142-3	chr14	60265025	60265225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-80.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	142.94	141.86	147.18	139.97	165.28	215.74	111.94	133.07	159.71	163.69	202.0	104.32
Merged-chr12-8501903-4	chr12	8501835	8502035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1926.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	14.13	8.05	5.7	12.87	7.36	17.87	14.62	14.61	21.24	18.08	20.1	17.54
Merged-chr2-28468028-3	chr2	28467923	28468123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-43.0	NM_080452	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	39.17	37.73	32.52	22.12	31.09	48.92	19.6	25.63	58.42	38.66	55.78	22.24
Merged-chr13-74640076-4	chr13	74640007	74640207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030711, intron 1 of 18)	CpG	254.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	28.67	42.01	54.76	35.8	46.64	47.04	51.15	48.39	55.86	82.35	68.34	49.18
Merged-chr7-122231345-3	chr7	122231254	122231454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HERVL74-int|LTR|ERVL	11858.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	49.26	48.29	96.98	71.19	60.96	76.2	72.75	87.39	72.58	51.21	82.91	62.03
Merged-chr15-81112732-3	chr15	81112626	81112826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-7679.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	171.61	134.06	171.14	145.6	110.87	153.65	115.93	158.8	142.8	114.48	172.85	104.0
Merged-chr8-86885263-3	chr8	86885163	86885363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030563)	promoter-TSS (NM_030563)	-5.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	48.05	34.46	38.79	20.51	42.14	43.27	29.23	27.03	49.37	51.72	75.87	27.25
Merged-chr1-53851079-3	chr1	53850997	53851197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	1673.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	104.58	59.86	151.17	133.93	158.32	116.34	147.15	183.76	97.16	112.47	224.61	91.47
Merged-chr3-88553006-3	chr3	88552910	88553110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-59.0	NR_155541	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	93.28	96.84	98.12	83.26	96.14	111.0	50.49	78.95	113.69	120.51	102.51	72.68
Merged-chr1-128747523-2	chr1	128747413	128747613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-155214.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	16.15	5.79	13.69	25.74	29.86	29.79	69.76	53.41	3.93	0.5	7.54	5.64
Merged-chrM-15566-2	chrM	15476	15676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											34387.64	27189.42	37565.14	38600.72	32266.4	35506.79	38815.83	54002.85	0.0	0.0	0.0	0.0
Merged-chr4-150557059-3	chr4	150556940	150557140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95134.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	56.53	50.31	52.48	57.51	73.64	53.93	37.2	43.21	65.3	58.75	85.42	49.5
Merged-chr16-24891711-3	chr16	24891653	24891853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-167886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	33.52	23.14	49.63	57.11	83.05	83.41	59.13	82.15	61.17	49.21	80.9	48.56
Merged-chr9-25151861-3	chr9	25151771	25151971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-90.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	275.39	252.28	265.83	285.16	254.05	331.13	311.58	322.32	384.13	359.01	550.22	244.35
Merged-chr10-127636817-3	chr10	127636698	127636898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6188.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	58.55	54.33	55.33	52.29	62.59	70.87	47.5	46.49	61.37	34.14	42.21	40.1
Merged-chr11-106122889-3	chr11	106122769	106122969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 5 of 15)	intron (NM_011947, intron 5 of 15)	37058.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	41.59	31.44	62.18	39.01	42.96	54.88	29.56	44.38	38.94	35.65	48.74	23.81
Merged-chr1-162740567-3	chr1	162740475	162740675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081290)	promoter-TSS (NM_001081290)	-19.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	131.64	119.22	127.21	125.49	117.82	107.24	54.81	104.55	170.14	182.26	217.57	111.52
Merged-chr2-130906463-3	chr2	130906356	130906556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009730)	promoter-TSS (NM_009730)	-39.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	81.97	67.91	71.31	75.21	78.96	84.35	58.46	85.49	102.28	79.33	104.01	57.64
Merged-chr13-113485673-3	chr13	113485541	113485741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17203.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	118.31	83.51	132.92	141.17	152.19	177.17	158.78	157.4	152.43	137.58	205.01	88.34
Merged-chr10-41595804-3	chr10	41595703	41595903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 30 of 47)	intron (NM_001358562, intron 30 of 47)	27787.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	69.05	76.21	94.13	84.46	77.73	68.36	60.12	78.06	82.81	76.82	104.01	72.99
Merged-chr2-72379622-3	chr2	72379515	72379715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 8 of 19)	intron (NM_023057, intron 8 of 19)	93914.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	16.15	22.89	21.68	25.74	24.14	21.95	17.27	25.79	21.44	24.1	23.62	25.69
Merged-chr10-80855196-3	chr10	80855074	80855274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	-18.0	NM_001359149	66094.0	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	54.92	54.83	43.35	45.45	47.05	58.01	35.54	41.47	64.51	44.19	66.83	38.85
Merged-chr19-29420180-3	chr19	29420079	29420279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	9260.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	42.8	40.5	70.74	47.46	57.68	71.81	66.43	63.22	74.15	59.75	72.36	34.46
Merged-chr14-25473171-3	chr14	25473120	25473320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14035.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	46.03	55.08	71.31	65.16	80.59	96.27	70.42	90.59	79.07	57.74	102.51	51.06
Merged-chr16-30948424-3	chr16	30948310	30948510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	133022.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	61.38	59.86	65.03	56.31	75.28	95.64	37.2	53.78	41.11	51.21	46.73	24.43
Merged-chr15-8445477-3	chr15	8445378	8445578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-4777	-1015.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	51.28	35.21	33.66	41.02	44.18	46.1	30.23	31.01	48.19	40.67	67.84	34.46
Merged-chr4-154928968-3	chr4	154928863	154929063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-886.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	30.28	26.41	23.96	26.95	27.0	30.1	14.28	16.57	47.8	29.12	37.69	24.12
Merged-chr11-117939896-3	chr11	117939779	117939979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29487.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	39.17	30.94	25.67	36.6	45.0	35.43	22.26	25.43	27.14	43.68	53.26	18.17
Merged-chr2-14229279-3	chr2	14229196	14229396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-118.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	25.04	20.88	10.27	24.13	15.96	19.44	13.95	24.36	26.55	28.12	23.62	18.8
Merged-chr19-7206203-4	chr19	7206084	7206284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134150)	promoter-TSS (NM_134150)	100.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	46.03	44.27	36.51	28.96	30.27	62.71	27.24	22.88	45.24	55.23	46.73	39.78
Merged-chr15-12376327-3	chr15	12376210	12376410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54814.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	33.52	24.65	29.66	15.69	31.5	23.52	27.24	26.83	24.98	36.15	28.14	26.0
Merged-chr16-36935405-1	chr16	36935305	36935505	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	422.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	10.5	12.07	13.12	6.44	14.73	23.2	15.61	3.93	8.46	12.55	13.06	7.21
Merged-chr18-57591765-3	chr18	57591671	57591871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-39374.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	29.07	17.36	26.81	52.69	15.96	13.8	21.92	35.92	21.64	26.11	19.09	15.98
Merged-chrUn_JH584304-21087-1	chrUn_JH584304	20987	21187	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	38602.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	53.3	42.18	38.19	31.64
Merged-chr15-66684912-3	chr15	66684802	66685002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 10 of 47)	MTD|LTR|ERVL-MaLR	14132.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	31.5	16.85	33.09	28.56	24.96	29.48	25.58	47.94	26.36	31.13	42.71	20.36
Merged-chr14-121797841-3	chr14	121797746	121797946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-112.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	31.5	35.72	29.66	29.36	55.64	83.1	43.51	72.25	59.99	33.14	57.28	47.3
Merged-chr18-36735032-3	chr18	36734918	36735118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-52.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	156.27	128.78	159.73	147.21	160.37	155.53	118.59	157.77	178.79	161.68	195.97	133.14
Merged-chr7-126928859-3	chr7	126928754	126928954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-25.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	74.3	60.37	81.0	77.62	87.96	98.46	41.52	58.12	87.92	81.84	96.98	51.69
Merged-chr13-55212208-3	chr13	55212118	55212318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 1 of 22)	CpG	2436.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	24.63	16.1	18.83	14.48	24.96	13.48	10.96	20.47	25.18	45.19	28.64	15.98
Merged-chr13-58402391-5	chr13	58402289	58402489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301343)	promoter-TSS (NM_001301343)	123.0	NR_153504	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	58.15	65.65	56.48	57.51	67.09	93.13	77.4	56.19	67.86	129.04	78.89	65.47
Merged-chr12-85374283-3	chr12	85374173	85374373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	CpG	444.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	83.18	72.44	99.83	110.2	94.91	125.43	65.11	91.6	97.36	127.03	184.41	88.65
Merged-chr15-82942250-1	chr15	82942150	82942350	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17046.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	1.21	2.26	2.28	1.21	0.0	0.63	0.0	0.0	20.26	16.07	34.17	16.92
Merged-chr17-86167547-3	chr17	86167443	86167643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-242.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	105.39	118.97	98.69	118.25	81.41	94.7	65.11	80.69	111.33	102.43	116.07	76.75
Merged-chr1-53825105-3	chr1	53824989	53825189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-24335.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	29.88	31.94	34.23	46.25	63.82	58.32	49.49	46.99	68.05	60.25	61.81	20.05
Merged-chr4-139308077-3	chr4	139307986	139308186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	2622.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	80.76	49.55	69.6	69.58	131.73	145.5	101.31	113.36	72.97	80.34	101.0	48.87
Merged-chr9-64830232-3	chr9	64830142	64830342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	19231.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	29.48	22.64	37.08	33.78	35.18	60.83	28.57	40.07	37.37	38.66	37.18	34.15
Merged-chr4-128811566-3	chr4	128811458	128811658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-5446.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	54.92	37.98	38.79	32.18	62.18	77.45	25.58	42.73	67.46	61.76	68.34	30.07
Merged-chr8-70212555-5	chr8	70212396	70212596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-215.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	140.92	159.22	130.06	152.84	186.55	222.01	184.02	171.84	168.17	214.9	213.56	129.38
Merged-chr12-41565878-1	chr12	41565778	41565978	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-79821.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.04	2.01	1.14	2.41	5.32	0.0	9.3	8.97	1.77	5.02	4.52	1.25
Merged-chr2-59401174-3	chr2	59401067	59401267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14485.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	27.86	22.13	42.21	32.18	40.91	44.53	52.48	59.83	43.86	44.69	72.86	52.32
Merged-chr3-95133980-3	chr3	95133834	95134034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153121)	promoter-TSS (NM_153121)	78.0	NM_027013	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	34.32	29.43	25.67	41.83	40.09	45.47	22.59	36.25	46.03	45.69	43.72	20.68
Merged-chr10-99441217-3	chr10	99441111	99441311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167960.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	31.9	20.12	45.07	45.45	55.23	42.02	48.83	55.74	42.09	39.16	39.19	27.25
Merged-chrX-94122561-3	chrX	94122463	94122663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358356, intron 1 of 8)	CpG	844.0	NM_011768	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	60.17	60.12	49.63	59.12	73.64	70.87	64.44	64.85	90.28	98.91	104.52	50.44
Merged-chrUn_JH584304-53958-1	chrUn_JH584304	53858	54058	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	5731.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	24.39	26.61	25.63	34.46
Merged-chr8-86888740-3	chr8	86888641	86888841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3483.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	37.55	27.17	55.9	32.58	54.0	49.23	52.48	59.64	48.19	47.7	67.84	30.39
Merged-chr10-75517925-3	chr10	75517824	75518024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347201)	promoter-TSS (NM_001347201)	48.0	NM_001347201	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	83.18	96.59	94.7	64.75	105.55	122.61	61.45	68.02	107.59	132.05	110.55	76.44
Merged-chr2-163642932-3	chr2	163642818	163643018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012032, intron 1 of 9)	RLTR4_Mm|LTR|ERV1	-1932.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	29.48	27.42	18.25	24.94	31.5	31.98	20.59	37.99	34.22	23.6	33.67	18.48
Merged-chrX-48343574-3	chrX	48343441	48343641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178782, intron 2 of 14)	intron (NM_178782, intron 2 of 14)	2183.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	47.24	43.51	52.48	55.1	40.5	61.15	54.14	70.18	51.34	40.67	84.42	39.78
Merged-chr7-24884061-3	chr7	24884019	24884219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-473.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	63.8	53.58	51.34	41.83	63.0	76.51	56.47	46.74	83.79	73.31	98.49	56.7
Merged-chr1-74332500-3	chr1	74332392	74332592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-118.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	69.86	77.47	53.62	57.51	91.64	95.64	66.43	81.11	80.05	76.32	109.54	58.89
Merged-chr3-65666465-6	chr3	65666330	65666530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037923, intron 1 of 2)	CpG	202.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	87.62	63.39	90.7	96.93	73.64	111.95	146.49	138.14	68.64	66.78	105.02	60.77
Merged-chr6-142573037-3	chr6	142572966	142573166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-1452.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	14.94	9.81	10.84	20.11	16.77	21.32	26.24	20.58	17.51	33.14	22.61	18.17
Merged-chr16-33641987-3	chr16	33641891	33642091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-42475.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	17.77	22.89	36.51	16.09	26.18	31.04	18.27	30.0	28.32	29.62	27.13	24.75
Merged-chr8-69749855-6	chr8	69749749	69749949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001200023, exon 1 of 4)	5' UTR (NM_001200023, exon 1 of 4)	113.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	68.24	72.94	66.17	67.97	49.5	81.53	97.66	56.64	72.97	71.3	84.42	66.1
Merged-chr15-97164843-3	chr15	97164746	97164946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	2398.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	62.18	57.6	88.42	94.52	82.23	78.71	95.67	113.3	98.34	70.8	125.12	93.67
Merged-chr5-149636336-3	chr5	149636225	149636425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-10.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	171.21	191.66	155.73	191.45	202.92	197.24	141.17	191.24	223.44	188.29	200.99	124.37
Merged-chr12-100203584-3	chr12	100203473	100203673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	3429.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	26.25	25.15	23.96	20.51	34.77	59.89	28.9	46.15	31.67	33.64	33.16	26.0
Merged-chr9-116366352-3	chr9	116366266	116366466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177186.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	31.09	16.6	35.94	33.38	25.77	30.42	29.9	30.25	24.0	16.07	35.68	12.22
Merged-chr15-67116910-3	chr15	67116815	67117015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	59967.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	110.24	119.22	117.51	127.5	159.55	226.09	166.09	125.83	142.99	148.62	186.42	75.81
Merged-chr5-23908433-1	chr5	23908333	23908533	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56200.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.4	0.0	0.0	0.0	17.18	25.71	24.58	27.84	0.2	0.0	0.0	3.13
Merged-chr1-191990195-3	chr1	191990087	191990287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8447.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	36.75	32.2	43.93	42.23	46.23	50.17	35.87	56.64	62.94	52.72	79.89	28.19
Merged-chr2-49313291-3	chr2	49313175	49313375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67375.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	27.86	33.2	29.09	33.78	34.36	37.0	24.25	48.79	59.6	42.68	56.78	26.94
Merged-chr18-44686916-1	chr18	44686816	44687016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-24650.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	21.8	16.6	23.39	24.53	0.0	0.0	0.0	0.0	6.69	8.03	6.03	6.58
Merged-chr12-36157912-3	chr12	36157830	36158030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146033, intron 1 of 9)	intron (NM_146033, intron 1 of 9)	806.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	12.92	11.82	26.81	14.48	12.27	11.92	10.3	18.95	14.16	19.08	17.59	17.54
Merged-chr12-86832362-3	chr12	86832247	86832447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52467.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	15.34	19.37	15.4	13.67	31.91	25.71	13.62	26.22	22.23	30.63	30.65	20.36
Merged-chr19-53855173-3	chr19	53855066	53855266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-37065.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	21.4	15.34	23.39	27.75	29.05	37.94	25.58	38.66	36.78	19.08	37.69	22.56
Merged-chr7-24530547-3	chr7	24530466	24530666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153134)	promoter-TSS (NM_153134)	-82.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	109.02	89.54	95.84	101.35	85.91	126.68	71.08	99.0	143.39	108.45	138.18	98.05
Merged-chr11-116110796-3	chr11	116110707	116110907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-572.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	88.03	89.29	103.25	135.94	123.14	120.1	75.73	87.14	102.67	135.07	112.05	67.35
Merged-chr2-168170408-3	chr2	168170311	168170511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-15898.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	96.51	76.97	110.67	88.89	129.28	115.71	110.95	125.86	134.73	104.94	168.33	80.2
Merged-chr16-20141091-3	chr16	20140961	20141161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145931)	promoter-TSS (NM_001145931)	-2.0	NM_001033237	208146.0	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	50.07	34.46	27.95	37.4	64.23	63.97	34.55	50.07	67.86	83.85	84.42	56.07
Merged-chr11-103281937-3	chr11	103281848	103282048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14547.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	88.03	81.5	93.55	115.43	94.09	79.65	74.41	88.26	92.25	79.83	109.04	69.55
Merged-chr11-77981854-3	chr11	77981744	77981944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-972.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	99.33	61.62	70.17	101.35	81.41	113.2	50.49	72.28	125.49	118.5	120.6	77.69
Merged-chr1-172513117-3	chr1	172513010	172513210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8020.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	37.96	24.65	21.68	29.76	27.0	21.01	28.23	35.27	71.0	68.79	98.99	28.19
Merged-chr15-67345681-3	chr15	67345565	67345765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045140, intron 7 of 8)	RMER19A|LTR|ERVK	118896.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	30.28	33.2	25.67	63.15	40.91	29.48	44.51	48.59	40.91	40.17	70.35	28.19
Merged-chr1-106695944-3	chr1	106695852	106696052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	ORR1F|LTR|ERVL-MaLR	18338.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	21.8	31.19	83.29	60.73	46.64	42.96	61.45	94.35	64.71	43.18	93.46	55.45
Merged-chr10-82900291-3	chr10	82900205	82900405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	33679.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	37.55	18.86	56.48	51.08	54.82	52.99	107.62	91.49	142.01	106.45	230.64	103.69
Merged-chr13-56522425-3	chr13	56522320	56522520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346732)	promoter-TSS (NM_001346732)	-52.0	NM_178674	213311.0	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	16.56	15.09	3.42	17.7	37.23	33.55	18.93	21.2	35.01	22.09	36.68	19.74
Merged-chr1-166409313-3	chr1	166409206	166409406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175170, exon 2 of 6)	5' UTR (NM_175170, exon 2 of 6)	522.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	48.05	48.54	19.4	18.1	49.09	77.77	48.16	24.53	51.14	63.27	37.69	11.28
Merged-chr2-59243708-4	chr2	59243583	59243783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	GA-rich|Low_complexity|Low_complexity	82833.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	14.13	13.33	27.95	32.18	42.55	12.23	36.87	33.11	17.51	14.56	19.6	16.29
Merged-chr18-10725572-3	chr18	10725511	10725711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144860)	promoter-TSS (NM_144860)	-14.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	214.42	190.16	185.4	254.19	245.46	281.9	198.31	249.11	193.15	205.36	296.46	142.85
Merged-chr18-11691043-2	chr18	11690953	11691153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 4 of 18)	RLTR13B1|LTR|ERVK	33704.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	35.13	45.02	49.63	24.13	2.05	3.14	2.99	1.23	47.4	35.65	33.16	20.68
Merged-chr11-86624488-3	chr11	86624400	86624600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-40342.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	39.98	33.7	42.78	25.34	49.09	52.37	21.92	18.53	56.45	45.69	47.74	26.31
Merged-chr2-163602286-3	chr2	163602183	163602383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-31.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	50.07	36.97	51.34	39.01	52.77	66.48	22.92	56.83	61.96	70.8	68.84	40.41
Merged-chr2-31572661-3	chr2	31572542	31572742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-9.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	15.34	13.08	7.99	13.67	22.5	15.99	12.62	15.25	20.06	21.09	20.1	16.92
Merged-chr16-90445596-3	chr16	90445495	90445695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 2 of 10)	intron (NM_015755, intron 2 of 10)	59198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	21.0	36.22	33.66	20.11	22.09	29.79	19.27	30.06	26.55	31.63	25.63	15.98
Merged-chr10-121586156-3	chr10	121586067	121586267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	627.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	57.34	57.6	41.64	21.32	65.05	112.89	41.52	25.71	102.87	106.45	80.4	43.23
Merged-chr17-86378794-3	chr17	86378691	86378891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-91613.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	41.99	49.8	60.47	70.79	64.23	50.17	62.78	96.22	69.04	46.19	57.28	64.53
Merged-chrX-169106366-3	chrX	169106260	169106460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109847, intron 1 of 14)	intron (NR_109847, intron 1 of 14)	-6518.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	39.98	16.1	40.5	58.72	61.37	33.55	46.84	100.85	46.81	44.19	58.79	24.75
Merged-chr14-121423113-3	chr14	121422997	121423197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43867.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	51.69	49.3	48.49	77.22	57.27	51.43	46.5	71.58	61.17	38.66	75.37	36.97
Merged-chr7-44373948-3	chr7	44373853	44374053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1077.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	50.88	31.69	50.77	68.37	42.96	51.74	40.19	77.27	73.17	51.72	104.52	59.83
Merged-chr18-50088925-3	chr18	50088827	50089027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-35265.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	38.76	28.42	29.66	28.56	36.41	63.34	38.2	46.26	49.96	42.68	60.3	28.82
Merged-chr7-49070813-3	chr7	49070714	49070914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	91344.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	30.28	19.62	26.24	29.76	36.0	29.16	17.94	43.57	47.01	33.64	28.64	20.36
Merged-chr3-36066053-3	chr3	36065965	36066165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172678)	promoter-TSS (NM_172678)	86.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	41.99	48.54	54.76	51.08	60.14	96.27	65.44	94.77	72.38	72.81	101.5	47.3
Merged-chr2-58161142-3	chr2	58161046	58161246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1024.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	60.17	50.56	73.02	92.1	119.05	91.88	104.97	137.97	148.7	125.02	219.58	88.65
Merged-chr17-83214306-3	chr17	83214219	83214419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-964.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	41.19	43.26	57.05	52.29	44.18	44.84	38.2	54.28	59.99	53.22	60.8	37.59
Merged-chr3-55129492-3	chr3	55129379	55129579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144987, intron 8 of 8)	MER73|LTR|ERVL	-7860.0	NM_001290138	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	68.24	40.75	97.55	72.8	79.78	92.82	84.04	138.51	107.2	118.5	138.18	69.55
Merged-chr11-96075867-3	chr11	96075761	96075961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161419)	promoter-TSS (NM_001161419)	-167.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	202.71	209.02	209.93	187.83	212.32	248.04	143.83	161.89	262.58	331.39	267.32	163.21
Merged-chr11-88718466-3	chr11	88718353	88718553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201341)	promoter-TSS (NM_001201341)	-186.0	NM_001201341	76626.0	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	63.4	60.37	54.19	44.24	52.37	65.22	41.19	56.36	72.58	61.76	75.37	41.04
Merged-chr5-73286814-3	chr5	73286700	73286900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2616.0	NR_040687	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	57.34	46.03	40.5	60.33	37.23	40.14	35.87	53.64	48.39	31.63	72.86	27.88
Merged-chr8-18954148-3	chr8	18954055	18954255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3180.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	67.84	63.64	74.16	105.78	93.28	101.91	91.68	122.55	94.8	99.42	156.27	72.99
Merged-chr9-75273750-2	chr9	75273648	75273848	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081322, intron 19 of 40)	intron (NM_001081322, intron 19 of 40)	-32540.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	8.48	6.29	6.28	15.28	22.09	16.62	22.59	53.24	37.17	16.57	39.7	29.45
Merged-chr10-122570012-3	chr10	122569920	122570120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-129.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	130.02	112.94	146.04	176.57	121.5	144.56	120.25	119.22	165.02	130.55	147.23	93.35
Merged-chr6-113442573-3	chr6	113442477	113442677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205025)	promoter-TSS (NM_001205025)	8.0	NM_001243739	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	31.9	19.62	44.5	24.94	32.73	34.81	12.62	33.59	29.7	29.12	35.68	29.76
Merged-chr11-3124038-3	chr11	3123953	3124153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	32.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	78.74	84.01	84.43	89.69	114.96	144.24	108.29	80.94	120.57	107.45	172.85	65.79
Merged-chr4-33245089-3	chr4	33244969	33245169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033225)	TTS (NM_001033225)	3718.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	20.59	23.64	26.24	26.14	19.64	25.4	36.87	26.58	38.16	21.09	52.76	26.94
Merged-chr17-37044897-3	chr17	37044818	37045018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-1048.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	27.46	19.62	23.39	25.74	23.32	33.55	24.91	33.93	37.17	28.62	39.19	22.87
Merged-chr1-37865180-3	chr1	37865060	37865260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207228)	promoter-TSS (NM_207228)	-78.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	218.45	213.3	220.77	197.88	238.92	313.57	202.29	240.45	274.38	348.46	347.22	178.56
Merged-chr6-11907725-3	chr6	11907561	11907761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-168.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	52.09	67.16	35.37	49.47	51.55	90.0	85.7	54.36	73.76	101.93	95.97	51.69
Merged-chr10-80741257-3	chr10	80741176	80741376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	999.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	35.13	21.13	50.77	41.83	36.41	44.53	36.87	41.94	62.94	52.72	74.87	38.22
Merged-chr6-25809278-3	chr6	25809153	25809353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-27.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	235.01	199.46	233.32	244.14	247.92	260.27	215.25	283.91	331.42	327.37	373.34	170.73
Merged-chr15-78244809-3	chr15	78244716	78244916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	5.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	121.54	112.94	127.78	97.33	128.05	162.43	111.61	87.73	117.62	97.91	133.66	46.68
Merged-chr1-65186596-3	chr1	65186505	65186705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111320)	promoter-TSS (NM_001111320)	-80.0	NM_001310624	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	197.05	165.0	188.82	166.51	178.78	233.61	146.82	176.64	230.72	214.4	280.39	162.59
Merged-chr19-38054887-3	chr19	38054789	38054989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-95.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	160.71	149.41	146.04	119.45	204.55	182.19	98.65	123.62	193.15	189.8	213.56	92.41
Merged-chr2-72260876-3	chr2	72260732	72260932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	156.27	113.94	200.8	183.0	146.05	156.47	140.18	157.96	143.39	155.65	231.14	97.74
Merged-chr11-121259906-3	chr11	121259776	121259976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080932)	promoter-TSS (NM_001080932)	-111.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	84.39	84.76	73.02	55.5	74.87	105.05	55.14	76.85	128.44	124.02	144.71	60.77
Merged-chr16-50528966-3	chr16	50528897	50529097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	CpG	495.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	22.21	23.39	25.1	20.51	25.77	29.48	32.22	28.35	27.34	31.13	35.17	20.99
Merged-chr3-95106927-3	chr3	95106816	95107016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008847)	promoter-TSS (NM_008847)	14.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	50.88	57.85	51.91	59.53	76.09	91.25	61.78	61.6	87.92	66.78	108.54	61.71
Merged-chrUn_JH584304-36335-1	chrUn_JH584304	36235	36435	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	23354.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	22.82	16.07	20.6	10.02
Merged-chr11-87443491-3	chr11	87443400	87443600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	15909.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	76.32	70.68	60.47	93.31	36.41	91.88	56.8	49.09	50.94	53.22	70.85	34.46
Merged-chr4-150212675-3	chr4	150212591	150212791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B1|LTR|ERVK	-11556.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	95.7	83.51	101.54	85.67	85.5	120.73	86.36	69.81	121.95	110.97	130.65	57.95
Merged-chr17-56584861-3	chr17	56584749	56584949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	-133.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	218.05	232.16	196.24	232.87	219.28	298.21	157.45	152.3	299.75	325.87	328.12	197.04
Merged-chrX-85797681-3	chrX	85797553	85797753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20834.0	NM_001294138	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	43.61	60.87	46.78	47.86	64.23	93.44	67.43	59.19	89.89	74.31	85.42	51.69
Merged-chr5-115535838-3	chr5	115535727	115535927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-23640.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	39.98	17.1	35.94	37.0	50.73	46.41	39.53	59.61	53.3	45.69	65.83	33.52
Merged-chr2-101881969-3	chr2	101881875	101882075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1052.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	50.47	32.2	50.2	41.43	85.91	89.68	66.43	83.41	105.03	119.5	102.51	58.89
Merged-chr16-17222368-3	chr16	17222264	17222464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11223.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	103.37	134.32	69.6	84.06	22.91	39.82	18.27	7.43	31.67	31.13	27.13	37.28
Merged-chr16-32177064-3	chr16	32176964	32177164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2736.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	63.8	99.86	67.88	28.15	55.64	89.37	48.16	30.7	83.99	91.38	68.84	22.87
Merged-chr7-116476490-3	chr7	116476351	116476551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27918.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	26.25	43.01	45.64	37.81	42.55	51.43	43.18	39.25	66.09	42.68	61.3	24.75
Merged-chr16-91354760-3	chr16	91354659	91354859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18024.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	83.59	94.83	94.13	109.8	114.55	128.25	109.62	108.48	108.38	101.43	129.64	73.3
Merged-chr6-89644553-3	chr6	89644450	89644650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153162, intron 1 of 15)	CpG	562.0	NM_001178059	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	102.97	112.68	147.75	140.77	125.59	163.06	125.23	127.43	123.72	106.45	162.3	90.22
Merged-chrX-60001699-3	chrX	60001599	60001799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305797, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2235.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	44.42	37.48	60.47	53.09	51.14	76.2	46.84	92.47	82.02	82.85	99.49	45.74
Merged-chr6-88842211-3	chr6	88842119	88842319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030251)	promoter-TSS (NM_030251)	-284.0	NR_155424	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	160.31	190.66	185.97	176.57	192.69	266.85	202.29	188.33	266.12	352.48	320.58	162.27
Merged-chr14-25854255-3	chr14	25854154	25854354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	12099.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	49.67	27.42	50.2	52.29	54.0	63.03	55.8	66.34	53.3	44.19	70.85	33.52
Merged-chr17-56812233-3	chr17	56812139	56812339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	RMER5|LTR|ERV1	18769.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	33.52	37.23	51.34	53.09	18.41	27.28	22.92	33.14	46.62	30.63	70.35	39.78
Merged-chr9-72968573-3	chr9	72968408	72968608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163725, intron 4 of 6)	intron (NM_001163725, intron 4 of 6)	9723.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	61.78	54.58	28.52	35.39	52.77	63.97	28.23	52.01	56.25	60.75	63.82	32.89
Merged-chr6-120193335-3	chr6	120193236	120193436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347432)	promoter-TSS (NM_001347432)	-487.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	36.75	34.96	42.78	31.77	52.77	72.44	33.88	54.7	44.45	50.21	66.33	38.22
Merged-chr2-164833521-3	chr2	164833439	164833639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	57.0	NM_001082974	415115.0	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	32.71	39.74	27.38	46.25	56.05	52.68	48.83	47.78	55.47	60.25	57.79	51.38
Merged-chr1-131976766-3	chr1	131976684	131976884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145977, exon 2 of 5)	5' UTR (NM_145977, exon 2 of 5)	6175.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	55.72	43.51	97.55	83.66	92.46	90.62	84.37	147.76	95.59	93.89	141.2	76.75
Merged-chr15-38473865-3	chr15	38473762	38473962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	16685.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	119.12	88.54	88.42	81.24	94.09	128.56	89.02	104.13	115.46	97.91	128.13	75.18
Merged-chr6-8687368-3	chr6	8687262	8687462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71096.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	88.43	104.38	130.06	129.91	104.32	111.95	101.64	145.01	133.35	139.08	145.22	62.03
Merged-chr16-31837616-3	chr16	31837524	31837724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 12 of 22)	intron (NM_001357281, intron 12 of 22)	-41186.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	32.3	16.35	23.96	24.13	31.91	23.52	13.29	20.92	35.01	27.62	32.66	19.11
Merged-chr17-29601571-3	chr17	29601465	29601665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-5260.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	21.0	16.35	25.1	15.28	32.73	40.76	18.93	30.9	24.78	24.1	41.2	22.87
Merged-chr5-66088449-3	chr5	66088354	66088554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9725.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	75.91	67.66	92.41	51.88	64.23	94.39	38.53	82.71	105.42	91.38	79.89	44.48
Merged-chr2-61593599-3	chr2	61593508	61593708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149324, intron 1 of 9)	intron (NR_149324, intron 1 of 9)	511.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	91.66	100.36	71.31	112.62	102.68	131.7	103.31	94.85	122.14	125.02	138.18	83.33
Merged-chr10-75667432-6	chr10	75667322	75667522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	CpG	-23414.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	16.15	15.34	14.26	13.67	24.55	15.05	23.58	19.09	16.13	19.58	19.6	18.8
Merged-chr11-87756228-2	chr11	87756114	87756314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-650.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	22.21	15.34	15.97	20.91	12.27	29.16	11.96	6.62	26.36	28.62	24.12	17.54
Merged-chr11-106428257-3	chr11	106428145	106428345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 5 of 21)	intron (NM_023913, intron 5 of 21)	-45464.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	56.13	54.33	85.0	80.84	49.5	61.77	41.19	47.38	51.53	60.75	77.38	27.88
Merged-chr2-174076291-3	chr2	174076212	174076412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172675)	promoter-TSS (NM_172675)	-739.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	72.68	65.9	74.73	78.83	72.82	80.59	48.83	79.21	81.43	95.9	122.1	59.83
Merged-chr9-44320308-3	chr9	44320149	44320349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	33.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	59.36	58.61	47.35	44.64	58.09	64.28	41.85	55.15	95.59	68.29	80.9	49.5
Merged-chr2-98662333-3	chr2	98662233	98662433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1194676.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1420.15	1216.39	1380.51	1208.61	1462.14	733.13	1532.3	2325.12	1268.44	1349.16	1122.04	1543.78
Merged-chr4-145252758-3	chr4	145252666	145252866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5896.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	37.15	34.21	45.64	28.15	39.68	78.39	47.5	30.48	57.04	49.21	47.23	18.48
Merged-chr3-89233652-3	chr3	89233568	89233768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183037)	TTS (NM_183037)	4612.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	15.75	14.09	19.4	16.89	35.18	34.49	16.61	29.07	30.88	26.61	31.66	18.8
Merged-chr8-84147949-3	chr8	84147854	84148054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145970)	promoter-TSS (NM_145970)	-84.0	NM_001163752	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	48.05	25.4	34.8	28.96	52.77	44.84	22.92	34.82	52.52	57.74	43.21	38.22
Merged-chr8-83749435-1	chr8	83749335	83749535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8124.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	41.59	20.37	44.5	21.32	27.41	29.16	26.57	22.96	39.34	43.68	37.18	17.86
Merged-chr15-74960942-3	chr15	74960841	74961041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5835.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	72.28	53.32	79.29	65.56	63.41	61.77	35.87	54.31	79.46	51.21	64.32	61.4
Merged-chr14-120277222-3	chr14	120277169	120277369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	1600.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	90.85	53.07	75.3	99.75	87.14	80.59	67.1	111.2	97.16	77.32	152.25	63.59
Merged-chr10-59235382-3	chr10	59235268	59235468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	13446.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	21.0	12.32	23.96	17.7	24.55	35.12	29.23	28.46	28.32	37.16	26.63	25.37
Merged-chr6-3481908-3	chr6	3481810	3482010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178899, intron 3 of 9)	intron (NM_178899, intron 3 of 9)	12588.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	29.88	20.37	32.52	41.02	35.18	33.24	28.57	47.47	36.58	26.11	51.76	29.13
Merged-chr18-61177125-3	chr18	61177027	61177227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178277)	promoter-TSS (NM_178277)	-77.0	NM_134134	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	56.53	61.12	38.79	44.24	69.55	72.44	42.85	53.64	62.74	46.7	53.26	34.77
Merged-chr2-167661711-3	chr2	167661595	167661795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-151.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	104.99	81.75	103.25	74.41	128.46	137.03	103.64	112.01	138.27	135.07	184.91	61.09
Merged-chr17-21566420-3	chr17	21566310	21566510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	-568.0	NM_001002008	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	27.46	27.42	23.39	14.48	30.68	41.39	25.24	36.0	120.18	109.46	91.95	57.33
Merged-chr11-70459854-3	chr11	70459753	70459953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151497, exon 1 of 6)	non-coding (NR_151497, exon 1 of 6)	131.0	NR_151499	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	61.78	64.14	29.09	28.96	49.5	132.33	60.46	40.88	95.0	82.35	60.3	24.75
Merged-chr3-95987918-3	chr3	95987830	95988030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045872)	TTS (NR_045872)	2420.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	44.01	44.77	45.07	44.64	51.14	60.83	34.88	90.22	46.42	49.21	79.89	34.77
Merged-chr11-29875005-3	chr11	29874928	29875128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	RMER16_Mm|LTR|ERVK	-49360.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	37.55	35.72	63.89	71.19	48.27	35.12	52.82	39.03	40.91	27.62	53.26	30.7
Merged-chr17-51209751-3	chr17	51209661	51209861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30409.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	17.77	17.36	21.11	27.75	13.91	16.62	14.28	31.46	36.58	23.6	25.12	18.17
Merged-chr9-53706484-3	chr9	53706370	53706570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175562)	promoter-TSS (NM_175562)	-238.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	196.65	212.04	228.75	247.35	272.87	311.69	204.29	207.11	340.07	339.93	436.66	196.1
Merged-chr6-85374809-3	chr6	85374720	85374920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177466)	promoter-TSS (NM_177466)	-186.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	96.51	68.42	99.26	74.81	106.37	107.56	79.72	83.41	122.73	144.61	196.47	82.08
Merged-chr6-100287415-4	chr6	100287251	100287451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	7.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	32.71	39.99	24.53	13.27	32.73	41.39	17.27	15.59	58.81	52.72	51.76	30.07
Merged-chr6-58831642-4	chr6	58831520	58831720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361967, exon 1 of 23)	5' UTR (NM_001361967, exon 1 of 23)	155.0	NM_001361966	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	37.55	51.81	25.1	53.09	45.0	35.75	56.14	55.35	36.58	49.71	51.25	31.64
Merged-chr8-11477938-3	chr8	11477839	11478039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	10.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	64.61	59.61	61.61	61.94	51.55	80.59	58.79	35.52	86.15	92.39	88.94	38.53
Merged-chr16-23346974-3	chr16	23346870	23347070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	MTEa|LTR|ERVL-MaLR	56500.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	40.78	51.06	39.36	36.2	24.55	58.01	34.21	22.18	40.71	23.1	48.24	19.74
Merged-chr14-62245706-5	chr14	62245604	62245804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47275.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	16.15	27.42	13.12	29.76	18.0	32.3	33.88	21.67	20.06	24.6	22.11	11.59
Merged-chr1-72254767-3	chr1	72254634	72254834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	10741.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	88.43	57.6	74.16	66.36	67.91	74.0	68.1	100.88	93.23	84.35	139.19	56.39
Merged-chr16-4913847-3	chr16	4913737	4913937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 5 of 17)	B3|SINE|B2	-25274.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	46.03	34.71	55.9	44.24	52.77	46.41	20.59	42.9	48.78	57.74	51.76	30.39
Merged-chr3-107334025-3	chr3	107333922	107334122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-733.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	153.04	131.55	133.49	135.14	153.0	209.78	111.28	176.97	232.09	211.89	322.59	133.45
Merged-chr1-36710070-3	chr1	36709986	36710186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146107)	promoter-TSS (NM_146107)	-161.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	103.78	102.12	108.96	111.81	140.32	179.99	69.09	136.88	160.69	127.53	170.84	93.35
Merged-chr2-165402125-3	chr2	165402006	165402206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1712.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	65.41	42.26	76.44	80.04	90.82	106.3	89.02	104.36	108.97	109.46	79.39	52.32
Merged-chr8-88647225-3	chr8	88647093	88647293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-154.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	19.79	18.86	17.11	25.34	52.37	50.49	44.18	34.01	23.01	21.59	38.69	17.54
Merged-chr9-7870691-3	chr9	7870589	7870789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	ORR1C2|LTR|ERVL-MaLR	2481.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	23.42	30.69	29.66	24.13	28.23	40.45	27.57	15.79	53.3	44.69	40.2	26.94
Merged-chr16-76373805-3	chr16	76373718	76373918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	9.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	21.8	19.12	23.39	28.15	46.64	41.08	54.81	57.48	25.96	24.1	56.78	20.68
Merged-chr16-14358726-3	chr16	14358611	14358811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2847.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	36.75	25.15	29.66	14.88	31.91	43.59	21.92	32.22	47.21	39.16	55.27	13.78
Merged-chr7-13009924-3	chr7	13009818	13010018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-66.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	62.18	59.61	63.32	57.51	69.55	71.81	58.46	77.66	101.29	87.37	97.98	52.94
Merged-chr12-69184637-3	chr12	69184529	69184729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	471.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	33.52	25.4	31.95	35.8	31.5	31.98	45.18	32.38	39.34	26.11	43.21	27.88
Merged-chr6-113307773-3	chr6	113307677	113307877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	640.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	39.17	34.96	45.07	36.2	55.64	72.12	36.87	38.47	60.38	51.72	70.85	35.09
Merged-chr8-104534557-3	chr8	104534449	104534649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	88.0	NM_144931	234664.0	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	61.38	70.43	65.03	77.22	63.41	65.22	104.63	63.0	59.2	60.25	64.32	45.42
Merged-chr11-80209025-3	chr11	80208914	80209114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-41.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	66.22	63.13	49.06	49.07	62.59	73.06	54.48	42.22	78.09	68.79	73.86	57.01
Merged-chr5-59845923-3	chr5	59845822	59846022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140080.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	8.88	16.6	22.25	27.35	43.77	41.71	33.55	76.65	40.91	33.64	35.17	23.49
Merged-chr19-32215053-3	chr19	32214938	32215138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4025.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	82.37	58.1	68.45	57.11	110.05	64.91	54.48	83.22	77.89	73.31	79.39	57.64
Merged-chr2-66180057-3	chr2	66179965	66180165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55272.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	18.98	25.91	34.8	22.93	34.36	32.61	19.6	40.35	35.21	28.62	63.82	32.89
Merged-chrX-74246924-1	chrX	74246824	74247024	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010227)	promoter-TSS (NM_010227)	-390.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	21.0	16.6	12.55	10.05	10.64	20.7	12.95	17.16	27.34	19.58	17.08	14.41
Merged-chr15-8444988-1	chr15	8444888	8445088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-525.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	16.96	16.85	14.83	20.91	21.27	16.93	7.31	10.12	31.47	32.13	39.7	29.76
Merged-chr6-99784985-3	chr6	99784877	99785077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-58585.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	27.05	27.42	25.67	22.52	23.32	40.45	21.26	17.78	28.32	28.12	25.63	19.74
Merged-chr1-133610385-3	chr1	133610303	133610503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-123.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	93.68	97.09	102.11	107.79	106.37	125.74	84.04	112.57	142.4	142.1	156.27	76.75
Merged-chr4-107879781-3	chr4	107879680	107879880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282737)	promoter-TSS (NM_001282737)	25.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	67.43	55.59	52.48	54.3	63.0	71.81	39.86	60.34	106.6	93.89	80.4	51.69
Merged-chr19-3322420-3	chr19	3322321	3322521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-880.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	23.82	33.96	19.97	30.97	32.32	40.76	28.9	17.94	31.67	27.11	46.23	20.68
Merged-chr13-58217788-3	chr13	58217694	58217894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2141.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	30.28	20.37	40.5	18.5	22.09	26.34	11.29	28.43	46.42	31.13	36.18	25.37
Merged-chr9-38820262-3	chr9	38820161	38820361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	4853.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	26.25	13.58	25.67	25.74	19.64	32.3	18.6	34.88	38.35	37.66	44.22	30.39
Merged-chr5-86078936-3	chr5	86078889	86079089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7243.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	96.1	68.42	129.49	116.24	115.78	95.01	110.95	145.32	194.33	201.85	273.35	155.69
Merged-chr9-77912083-3	chr9	77912000	77912200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5265.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	40.38	29.68	30.23	24.94	30.27	40.14	34.21	36.06	65.1	38.16	43.72	34.15
Merged-chr17-87025472-3	chr17	87025297	87025497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008838)	promoter-TSS (NM_008838)	4.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	98.12	105.14	90.7	98.14	120.69	103.79	81.05	115.88	165.61	175.23	171.85	85.52
Merged-chr4-11558882-3	chr4	11558795	11558995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256145)	promoter-TSS (NM_001256145)	-25.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	52.9	50.31	50.77	44.64	81.0	68.36	58.79	85.51	101.69	77.83	123.61	59.21
Merged-chr15-73612201-3	chr15	73612125	73612325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	5099.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	27.86	20.88	30.8	32.98	48.27	54.88	44.18	54.17	49.57	41.67	34.67	35.09
Merged-chr2-109904346-3	chr2	109904244	109904444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033473, intron 4 of 4)	intron (NR_033473, intron 4 of 4)	8975.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	35.53	31.94	36.51	55.5	43.36	33.87	19.6	45.84	50.94	36.15	60.3	33.83
Merged-chr11-73018934-3	chr11	73018831	73019031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	-77.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	97.31	69.67	95.84	97.73	112.91	99.09	83.04	114.59	131.98	98.41	155.77	54.82
Merged-chr17-53463358-3	chr17	53463256	53463456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-35.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	52.09	52.57	66.17	47.06	78.14	61.15	36.87	69.48	80.25	70.8	80.9	37.28
Merged-chr15-6501047-3	chr15	6500970	6501170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55737.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	31.9	37.98	23.96	20.51	38.86	46.41	23.25	40.15	53.5	35.15	34.17	28.51
Merged-chr5-24030780-3	chr5	24030680	24030880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053090)	promoter-TSS (NM_053090)	-90.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	184.13	157.96	197.38	187.83	180.41	191.91	162.1	199.74	209.67	195.32	230.64	113.09
Merged-chr16-15594446-3	chr16	15594338	15594538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023585)	promoter-TSS (NM_023585)	80.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	56.53	67.66	69.6	82.85	90.0	74.0	85.7	66.79	66.68	57.74	68.84	52.0
Merged-chr19-46076330-1	chr19	46076230	46076430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039351, intron 1 of 12)	intron (NM_001039351, intron 1 of 12)	483.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	16.56	9.81	4.56	1.61	8.59	9.09	5.31	6.08	14.16	12.55	11.05	10.02
Merged-chr17-35235851-3	chr17	35235737	35235937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-22.0	NM_010909	18038.0	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	54.11	67.66	66.74	47.06	63.41	66.48	29.56	47.5	101.1	79.33	79.89	70.17
Merged-chr11-64655349-3	chr11	64655250	64655450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218676.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	104.18	112.94	134.06	92.1	80.18	173.72	59.46	65.89	118.21	155.65	133.16	45.74
Merged-chr2-52938480-3	chr2	52938372	52938572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80604.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	92.07	84.51	82.15	57.92	148.5	137.97	77.4	110.44	117.82	136.57	107.03	75.5
Merged-chr17-56291302-3	chr17	56291187	56291387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025836)	promoter-TSS (NM_025836)	-776.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	105.79	90.8	91.27	67.57	99.82	140.17	63.78	99.95	110.15	145.61	146.72	78.32
Merged-chr5-142443689-3	chr5	142443576	142443776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-20255.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	52.09	51.31	51.34	57.51	96.55	158.98	139.51	94.01	76.71	76.32	86.43	51.38
Merged-chr6-51544546-3	chr6	51544432	51544632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	9.0	NM_001127348	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	72.68	58.35	49.63	39.01	82.23	116.65	58.46	68.38	114.28	102.93	94.97	41.98
Merged-chr16-87440435-3	chr16	87440335	87440535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016924, intron 1 of 4)	CpG	157.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	58.15	78.73	62.75	74.0	63.0	81.22	99.65	81.17	73.17	78.83	98.99	62.34
Merged-chr11-95309727-3	chr11	95309615	95309815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	531.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	168.79	144.88	139.19	161.68	157.1	205.7	120.91	132.73	166.4	151.64	197.98	110.58
Merged-chr4-132883840-3	chr4	132883764	132883964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	594.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	22.61	16.1	25.1	32.98	20.86	14.42	17.94	28.99	21.83	14.06	43.72	18.48
Merged-chr4-133369656-3	chr4	133369547	133369747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358455)	promoter-TSS (NM_001358455)	-88.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	43.21	43.01	42.78	42.23	41.32	63.34	22.92	33.73	61.96	59.25	74.87	47.62
Merged-chr11-87127120-3	chr11	87127031	87127231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	56.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	132.04	117.21	111.24	97.73	128.46	179.36	68.43	102.93	161.48	251.05	155.77	105.26
Merged-chr12-80436711-3	chr12	80436677	80436877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177267)	promoter-TSS (NM_177267)	-176.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	32.71	34.21	28.52	29.76	61.37	47.04	37.2	33.56	25.57	52.22	24.62	25.69
Merged-chr2-121008390-3	chr2	121008288	121008488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-20.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	40.78	29.93	29.66	32.18	46.64	52.68	19.6	38.07	53.5	54.73	53.77	41.35
Merged-chr15-89211296-3	chr15	89211202	89211402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-257.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	67.84	49.55	21.68	29.76	31.09	48.29	31.56	25.15	39.73	42.18	35.68	31.64
Merged-chr7-142398165-3	chr7	142398052	142398252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10282.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	121.14	98.1	131.21	114.22	119.87	102.85	124.9	137.89	113.69	137.58	157.78	118.1
Merged-chr3-104864471-3	chr3	104864364	104864564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	41.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	43.21	42.01	42.78	49.47	49.5	62.4	31.22	43.49	78.48	75.32	59.8	36.03
Merged-chr12-25097333-3	chr12	25097232	25097432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	20.59	24.4	28.52	20.51	24.96	31.36	22.26	37.37	39.53	29.62	36.68	36.03
Merged-chr13-113487238-3	chr13	113487127	113487327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	15617.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	134.87	144.13	177.98	128.3	136.64	217.31	191.0	164.64	176.04	190.3	199.99	126.87
Merged-chr1-111864971-3	chr1	111864861	111865061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	-43.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	126.79	108.16	164.29	176.57	175.51	188.46	198.31	274.01	182.13	153.64	321.09	119.04
Merged-chr3-57696450-3	chr3	57696378	57696578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3941.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	30.69	25.66	17.68	19.31	22.91	22.26	11.96	25.46	25.37	14.56	21.1	16.6
Merged-chr6-108828488-3	chr6	108828414	108828614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-127.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	277.81	290.26	318.31	373.24	393.56	402.31	356.75	461.78	450.42	471.48	697.95	286.01
Merged-chr2-32507306-3	chr2	32507214	32507414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28045.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	43.61	22.64	36.51	55.1	36.41	50.17	55.14	77.47	49.96	39.67	62.31	42.29
Merged-chr17-33629279-4	chr17	33629146	33629346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026712, intron 1 of 5)	CpG	154.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	43.61	35.47	26.24	34.99	31.5	42.65	33.22	25.51	31.86	39.16	30.15	23.81
Merged-chr18-34758739-3	chr18	34758662	34758862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175104)	promoter-TSS (NM_175104)	-88.0	NM_175104	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	49.67	30.43	46.78	40.22	62.59	74.94	27.9	58.12	86.74	69.29	65.32	32.58
Merged-chr5-122372462-3	chr5	122372354	122372554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	-54.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	79.95	63.13	65.6	48.67	57.27	133.9	43.85	61.65	95.39	83.35	68.84	52.94
Merged-chr10-117717753-3	chr10	117717660	117717860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7002.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	54.51	44.02	38.22	60.33	68.73	82.78	70.42	65.33	93.43	101.93	145.22	64.22
Merged-chr12-84751444-3	chr12	84751346	84751546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	21666.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	25.44	16.85	31.38	19.31	20.46	23.83	19.27	32.69	34.62	22.59	38.19	21.62
Merged-chr17-50499580-3	chr17	50499466	50499666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9981.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	42.4	33.7	47.92	24.53	40.09	32.93	28.57	34.93	46.62	39.67	63.31	26.94
Merged-chr5-31362093-3	chr5	31361993	31362193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	64512.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	34.73	38.23	52.48	59.12	38.46	74.32	44.51	21.42	31.08	33.14	36.68	27.57
Merged-chr7-55853023-3	chr7	55852916	55853116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	10945.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	76.72	88.54	117.51	134.74	96.14	104.73	83.37	86.83	96.97	118.5	141.7	53.26
Merged-chr7-19466001-3	chr7	19465919	19466119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7525.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	25.04	13.08	29.09	18.9	22.5	28.22	25.24	42.53	44.25	33.64	47.23	37.91
Merged-chr7-144941662-3	chr7	144941562	144941762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1737.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	54.11	39.49	38.79	43.04	39.27	62.09	26.24	40.12	64.91	61.76	82.91	40.41
Merged-chr17-23564237-3	chr17	23564138	23564338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-12.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	119.93	136.33	172.85	196.27	143.19	150.2	108.62	160.12	204.75	219.92	272.35	146.3
Merged-chr2-60284317-3	chr2	60284221	60284421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290660, exon 1 of 6)	5' UTR (NM_001290660, exon 1 of 6)	163.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	139.71	187.64	168.28	140.77	156.28	204.76	173.39	142.46	186.46	205.36	202.5	121.23
Merged-chr1-149947170-3	chr1	149947060	149947260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14130.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	16.96	10.82	30.23	24.53	31.91	31.67	29.23	48.06	34.22	31.13	34.67	25.69
Merged-chr4-132795350-1	chr4	132795250	132795450	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1014.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	8.88	4.28	10.84	4.83	15.55	16.93	5.31	12.73	17.51	13.05	23.62	15.04
Merged-chr18-60596184-3	chr18	60596101	60596301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177340, exon 3 of 3)	exon (NM_177340, exon 3 of 3)	-4485.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	56.94	34.21	43.93	51.08	73.23	62.4	48.5	60.87	60.78	56.74	83.91	38.22
Merged-chr10-24712084-3	chr10	24711952	24712152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008813, exon 1 of 25)	5' UTR (NM_008813, exon 1 of 25)	107.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	40.78	45.02	49.06	62.74	57.27	47.04	51.82	69.59	44.45	61.26	50.75	33.52
Merged-chr12-32111762-3	chr12	32111689	32111889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50510.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	35.94	35.47	34.23	58.72	45.82	37.32	27.57	47.3	59.01	42.68	61.3	37.59
Merged-chr2-11192511-3	chr2	11192410	11192610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	21.8	34.21	26.24	23.33	26.59	38.88	23.58	25.57	55.07	53.22	43.72	28.51
Merged-chr1-92251076-3	chr1	92250966	92251166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-70725.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	21.4	23.64	38.79	28.15	20.46	24.15	15.94	31.79	64.71	30.63	50.75	28.51
Merged-chr7-19084649-3	chr7	19084545	19084745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	796.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	100.95	78.23	76.44	107.79	69.55	121.04	58.13	117.7	141.62	121.51	158.78	83.02
Merged-chr11-117146301-3	chr11	117146197	117146397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	31125.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	34.73	35.72	37.08	37.81	42.55	40.14	20.26	34.09	58.42	41.17	36.68	20.99
Merged-chr10-81015055-3	chr10	81014963	81015163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-138.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	190.19	142.87	179.12	183.4	225.83	263.09	153.13	174.65	221.08	212.39	237.67	111.52
Merged-chr3-106547788-3	chr3	106547692	106547892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-6.0	NM_001286986	67171.0	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	99.33	105.89	87.85	111.01	90.82	115.39	92.34	92.38	114.47	144.61	137.18	104.94
Merged-chr2-168207453-3	chr2	168207357	168207557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009628)	promoter-TSS (NM_009628)	-345.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	137.29	134.57	94.7	89.69	98.18	137.03	78.39	95.55	146.93	176.74	168.83	102.44
Merged-chr11-20169175-3	chr11	20169061	20169261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32251.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	34.32	16.85	37.08	39.01	40.09	45.15	24.25	43.37	42.29	33.14	41.2	26.94
Merged-chr16-24620172-3	chr16	24620069	24620269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	90855.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	19.79	19.12	19.97	28.56	36.0	33.24	14.95	24.79	27.93	19.58	34.67	21.3
Merged-chr2-91526719-3	chr2	91526629	91526829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165989)	promoter-TSS (NM_001165989)	-33.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	47.65	37.23	40.5	45.05	53.59	89.05	33.88	56.69	73.36	60.75	67.84	48.87
Merged-chr4-19898219-3	chr4	19898134	19898334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	24332.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	32.3	16.85	46.21	34.99	45.82	38.26	23.58	54.9	39.14	34.65	54.77	26.63
Merged-chr10-80933837-3	chr10	80933752	80933952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3761.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	58.95	69.92	59.9	51.48	96.96	104.73	34.88	44.44	82.41	117.99	106.53	44.8
Merged-chr8-119412806-3	chr8	119412715	119412915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17923.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	7.27	17.36	14.83	17.29	11.05	16.31	10.63	14.66	18.88	19.08	35.17	13.47
Merged-chr2-167689032-3	chr2	167688912	167689112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	97.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	96.51	106.4	132.92	98.14	110.87	148.32	115.6	123.98	150.66	178.75	231.14	119.67
Merged-chr14-50870513-3	chr14	50870399	50870599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	55.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	23.42	30.43	29.66	22.12	24.55	33.55	42.19	33.62	27.93	31.63	43.21	22.87
Merged-chr7-41499441-3	chr7	41499370	41499570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	420.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	66.63	30.94	65.6	68.37	77.73	83.41	73.08	116.24	114.47	94.4	176.87	88.03
Merged-chr11-115514461-3	chr11	115514368	115514568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008258)	promoter-TSS (NM_008258)	-75.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	130.43	110.42	114.66	85.67	99.0	153.96	51.49	80.13	132.57	127.03	104.52	66.1
Merged-chr12-85824731-3	chr12	85824681	85824881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081423)	promoter-TSS (NM_001081423)	112.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	79.14	63.64	31.95	61.54	69.55	89.05	72.75	54.87	62.55	67.28	77.88	60.15
Merged-chr7-143038731-3	chr7	143038637	143038837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14013.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	64.61	53.32	45.64	32.98	36.82	55.82	22.59	28.79	59.01	49.71	60.3	26.63
Merged-chr7-74647557-3	chr7	74647451	74647651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92771.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	47.65	68.67	66.17	38.21	42.55	32.93	20.59	28.77	96.77	84.86	61.3	36.97
Merged-chr12-85648178-3	chr12	85648093	85648293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-38527.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	62.18	38.48	52.48	80.44	84.28	79.65	51.49	59.33	60.78	65.78	94.47	53.57
Merged-chr14-59440917-3	chr14	59440817	59441017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	-37.0	NM_001320721	239122.0	Mm.205022	NM_001081024	ENSMUSG00000071350	Setdb2	Clld8|Gm293|KMT1F	SET domain, bifurcated 2	protein-coding	123.16	102.12	153.45	177.37	109.23	119.16	107.29	163.71	151.84	112.47	206.02	102.44
Merged-chr15-83122806-3	chr15	83122705	83122905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029101)	promoter-TSS (NM_029101)	-4.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	49.67	34.21	27.95	33.38	48.68	57.7	23.92	35.3	53.11	66.28	70.35	34.46
Merged-chr1-178369069-3	chr1	178368970	178369170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31255.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	88.84	87.03	85.0	91.3	102.68	111.0	73.41	110.61	111.13	139.59	154.76	63.28
Merged-chr16-75872426-3	chr16	75872317	75872517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	36849.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	82.78	53.58	46.21	19.71	68.73	92.5	27.9	25.29	141.03	151.64	111.55	36.97
Merged-chr12-37241309-3	chr12	37241202	37241402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178767)	promoter-TSS (NM_178767)	-337.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	21.4	22.13	27.38	19.31	38.86	31.36	26.91	38.1	37.37	32.13	40.2	21.93
Merged-chr3-103859650-3	chr3	103859549	103859749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-146.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	107.41	100.86	87.85	124.68	69.96	90.94	79.39	68.64	79.86	83.85	117.08	38.22
Merged-chr7-12881093-3	chr7	12880999	12881199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-79.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	87.22	53.07	65.6	94.92	118.64	101.91	66.77	148.09	114.87	106.45	189.44	62.97
Merged-chrX-100508379-3	chrX	100508267	100508467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008784, intron 5 of 5)	intron (NM_008784, intron 5 of 5)	14076.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	44.82	47.79	56.48	23.73	26.59	52.68	45.51	44.64	59.01	31.63	48.24	25.37
Merged-chr8-41016370-3	chr8	41016292	41016492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1076.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	58.95	56.34	37.65	65.56	56.87	57.7	32.88	62.02	171.91	177.24	210.04	104.32
Merged-chr12-83860904-3	chr12	83860791	83860991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073564, intron 2 of 12)	MTEa|LTR|ERVL-MaLR	15921.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	24.63	35.21	53.62	34.99	35.18	41.39	18.6	28.35	41.11	29.12	49.24	31.95
Merged-chrX-19167278-3	chrX	19167175	19167375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20304.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	80.36	79.73	38.22	31.37	49.5	108.18	26.91	30.34	79.86	81.34	73.36	32.58
Merged-chr5-64794147-3	chr5	64794054	64794254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9369.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	40.38	35.97	41.64	52.29	48.27	47.35	21.59	54.81	53.5	47.2	52.26	27.57
Merged-chr13-98957918-1	chr13	98957818	98958018	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26647.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.75	0.0	0.8	0.82	0.0	0.0	0.03	33.83	22.09	24.62	26.31
Merged-chr13-117211554-3	chr13	117211455	117211655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9018.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	25.04	32.7	81.0	86.07	47.05	39.82	46.84	57.42	66.48	50.71	80.9	45.42
Merged-chr1-71103087-3	chr1	71102988	71103188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-116.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	226.93	199.71	270.97	255.8	272.46	298.52	201.3	279.7	323.36	320.34	487.41	160.71
Merged-chr6-113630475-3	chr6	113630369	113630569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	6448.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	33.11	38.99	48.49	60.33	29.46	37.0	24.58	46.21	23.41	23.6	23.62	15.66
Merged-chr4-114909020-3	chr4	114908935	114909135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008593)	promoter-TSS (NM_008593)	-137.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	44.01	56.34	42.21	70.79	48.68	49.54	32.22	50.72	64.32	61.26	76.38	44.48
Merged-chr12-40656103-3	chr12	40655995	40656195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210042.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	46.84	35.72	58.76	53.09	45.0	50.8	20.26	53.41	59.79	60.25	47.23	31.01
Merged-chr17-44053610-3	chr17	44053512	44053712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25190.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	73.89	74.45	134.06	123.48	102.68	98.78	107.29	127.99	90.87	77.32	142.2	75.18
Merged-chr8-75152828-3	chr8	75152709	75152909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43300.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	29.48	33.7	39.93	33.38	25.36	35.75	41.19	30.36	51.14	50.71	52.26	20.99
Merged-chrX-76599051-3	chrX	76598931	76599131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001201395, intron 1 of 1)	SYNREP_MM|Satellite|Satellite	3893.0	NM_001201395	74987.0	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	18.57	28.17	24.53	27.75	23.32	22.89	26.91	34.85	51.93	64.27	54.77	60.15
Merged-chr8-122551464-3	chr8	122551419	122551619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357349)	promoter-TSS (NM_001357349)	-190.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	48.86	64.39	54.76	58.72	49.5	67.73	72.41	46.82	50.16	57.74	40.7	36.03
Merged-chr6-29523589-3	chr6	29523500	29523700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3025.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	69.05	54.08	66.17	53.49	56.46	62.71	28.57	47.1	71.79	53.22	70.85	53.57
Merged-chr9-63706513-3	chr9	63706400	63706600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	51494.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	81.57	73.19	90.7	41.83	54.41	98.78	51.82	47.58	104.64	77.32	86.43	45.11
Merged-chr6-72120093-3	chr6	72120010	72120210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045163)	TTS (NR_045163)	2830.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	26.25	23.64	45.07	62.74	52.77	43.59	40.86	70.65	55.86	47.2	70.85	52.32
Merged-chr4-88438916-3	chr4	88438812	88439012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	14.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	16.15	20.37	27.95	28.15	20.46	11.6	27.24	28.21	23.8	35.15	45.22	24.43
Merged-chr3-41374782-1	chr3	41374682	41374882	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	118417.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	1.62	0.0	2.28	3.22	2.45	3.45	10.96	10.32	0.0	0.0	3.01	0.63
Merged-chr2-127270711-3	chr2	127270628	127270828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139308, exon 1 of 8)	exon (NM_139308, exon 1 of 8)	499.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	54.92	72.69	74.16	68.78	59.32	106.3	48.16	68.64	104.44	85.36	128.64	64.53
Merged-chr6-125166597-3	chr6	125166492	125166692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	-125.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	48.86	32.95	43.35	18.9	58.91	53.93	22.26	37.09	100.7	85.86	152.75	59.52
Merged-chr5-117120025-3	chr5	117119904	117120104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199685)	promoter-TSS (NM_001199685)	-125.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	146.17	111.68	162.58	138.76	174.28	208.84	146.49	139.35	194.72	216.41	223.1	98.05
Merged-chr12-35047937-3	chr12	35047837	35048037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	748.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	60.97	51.06	56.48	88.08	56.05	54.56	54.48	62.33	59.4	55.73	83.41	44.8
Merged-chrX-59817531-2	chrX	59817434	59817634	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181930.0	NM_007979	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	8.08	5.53	8.56	12.87	21.27	14.74	15.94	18.06	18.49	17.57	31.66	15.35
Merged-chr15-25302009-3	chr15	25301913	25302113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	111751.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	31.5	27.92	49.06	52.29	39.68	33.87	65.11	55.26	54.68	41.67	77.38	34.77
Merged-chr10-121369062-3	chr10	121368955	121369155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3965.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	16.56	26.91	23.39	20.11	32.73	31.04	38.53	36.93	33.04	27.62	34.67	15.35
Merged-chr1-181214495-1	chr1	181214395	181214595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2517.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	24.63	23.14	37.08	25.34	1.23	1.25	1.66	0.9	3.74	4.02	2.01	2.82
Merged-chr17-28007333-3	chr17	28007225	28007425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73259.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	29.48	25.4	52.48	39.42	27.0	27.59	33.88	52.63	26.55	17.07	36.18	15.04
Merged-chr17-70851864-3	chr17	70851769	70851969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-135.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	136.48	145.63	135.2	148.81	153.41	224.83	128.22	158.44	185.28	195.32	229.13	102.12
Merged-chr13-9180452-3	chr13	9180335	9180535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	86554.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	38.76	46.03	26.81	31.37	56.87	56.76	40.52	39.36	67.86	54.73	71.35	29.13
Merged-chr11-87109022-3	chr11	87108880	87109080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175563)	promoter-TSS (NM_175563)	-266.0	NM_175563	270906.0	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	168.79	196.95	202.51	171.34	198.82	262.46	126.89	161.72	269.46	295.74	295.96	182.01
Merged-chr9-46283022-3	chr9	46282920	46283120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146000)	promoter-TSS (NM_146000)	8.0	NM_146000	215051.0	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	38.36	39.49	20.54	20.91	35.18	44.53	20.93	30.53	43.07	46.19	39.19	28.82
Merged-chr19-3851771-3	chr19	3851667	3851867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-6.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	136.48	133.06	126.64	88.48	105.14	163.37	76.4	88.93	135.91	178.75	141.7	84.58
Merged-chr18-34932067-3	chr18	34931971	34932171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144866)	promoter-TSS (NM_144866)	-68.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	291.14	255.05	273.82	243.73	290.46	389.14	259.09	270.37	355.61	381.6	473.34	225.24
Merged-chr4-46650203-3	chr4	46650119	46650319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198664)	promoter-TSS (NM_198664)	-20.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	60.97	43.77	29.09	41.02	58.5	62.4	32.88	56.36	68.64	94.4	80.9	52.94
Merged-chr3-108383713-3	chr3	108383621	108383821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040560)	promoter-TSS (NR_040560)	20.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	17.77	23.39	22.25	22.93	27.41	31.67	18.6	24.03	21.05	33.14	27.64	16.29
Merged-chr4-136021795-3	chr4	136021710	136021910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013736)	promoter-TSS (NM_013736)	-161.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	147.79	151.92	110.67	131.92	138.28	162.74	85.7	90.79	186.85	168.71	158.78	109.33
Merged-chr18-46404857-3	chr18	46404773	46404973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60943.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	115.08	97.34	107.82	104.17	90.41	169.33	75.07	129.79	169.74	167.7	205.52	96.17
Merged-chr15-53414999-3	chr15	53414878	53415078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-68795.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	75.91	67.41	87.28	122.67	105.55	84.04	82.05	124.04	105.82	97.41	143.71	67.35
Merged-chr1-66816133-3	chr1	66816019	66816219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	MIR|SINE|MIR	1476.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	51.28	38.99	47.35	36.6	70.77	92.5	82.05	91.99	124.31	115.48	135.67	76.44
Merged-chr2-4919012-3	chr2	4918903	4919103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	7.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	30.28	24.9	33.66	30.16	42.14	56.13	37.54	44.33	40.32	48.2	70.85	31.01
Merged-chr1-134458330-3	chr1	134458232	134458432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311136, intron 1 of 11)	intron (NM_001311136, intron 1 of 11)	2801.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	43.61	36.22	36.51	66.36	29.46	39.2	26.57	29.47	33.63	21.59	38.19	27.25
Merged-chr5-86172858-3	chr5	86172746	86172946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-103.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	152.23	149.16	140.9	153.64	178.37	211.03	179.04	232.94	240.16	245.03	288.93	167.6
Merged-chr6-34608791-3	chr6	34608686	34608886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	10282.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	19.38	14.59	47.92	32.18	44.18	54.25	41.85	47.27	53.5	32.64	89.94	39.16
Merged-chr1-132155953-3	chr1	132155859	132156059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16274.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	35.13	24.15	29.66	21.32	19.23	27.91	17.61	18.0	36.78	34.65	38.69	25.06
Merged-chr8-122870540-3	chr8	122870450	122870650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	22176.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	19.79	23.39	21.11	22.93	31.5	37.0	32.88	28.96	41.5	43.68	53.26	17.86
Merged-chr11-101468102-3	chr11	101468002	101468202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-73.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	23.82	21.13	24.53	14.88	18.41	31.67	14.62	27.9	31.08	23.1	25.63	18.8
Merged-chrX-85870264-4	chrX	85870223	85870423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163539)	promoter-TSS (NM_001163539)	50.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	18.17	19.62	19.97	19.31	30.68	42.33	28.9	21.64	27.14	23.1	28.64	10.96
Merged-chr15-98683369-3	chr15	98683273	98683473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5912.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	27.46	30.94	34.8	7.24	20.46	46.72	17.61	13.54	40.71	37.16	24.62	24.43
Merged-chr9-95540660-3	chr9	95540578	95540778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19139.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	34.73	33.7	22.25	24.13	40.91	50.8	31.56	26.64	76.12	61.76	89.94	51.06
Merged-chr2-157069652-3	chr2	157069558	157069758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	9607.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	41.99	29.18	58.19	32.18	36.82	40.45	41.19	41.16	24.39	19.08	27.13	14.72
Merged-chr8-84662357-2	chr8	84662246	84662446	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010499, exon 1 of 1)	exon (NM_010499, exon 1 of 1)	506.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	85.2	100.36	63.32	44.64	49.09	107.56	38.53	25.04	75.53	98.41	85.92	49.18
Merged-chr9-53633634-3	chr9	53633535	53633735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161618, intron 9 of 17)	intron (NM_001161618, intron 9 of 17)	-23285.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	16.96	14.34	21.68	34.99	25.77	22.26	35.21	36.22	45.04	28.12	54.77	26.31
Merged-chrX-96256732-3	chrX	96256633	96256833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177789, intron 4 of 6)	B4A|SINE|B4	13916.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	24.23	20.88	38.22	26.95	39.27	22.26	30.89	40.04	28.72	27.62	22.61	22.87
Merged-chr6-108213059-3	chr6	108212966	108213166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-30.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	140.92	125.01	157.45	170.53	157.1	164.31	122.24	225.23	226.98	177.75	306.51	166.66
Merged-chr3-79237830-3	chr3	79237743	79237943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	24924.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	84.8	84.01	101.54	137.95	119.46	117.28	80.39	106.99	121.16	109.96	178.88	74.24
Merged-chr2-122118420-3	chr2	122118322	122118522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-36.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	169.59	155.19	201.37	173.75	207.01	210.72	155.12	198.03	199.84	202.35	245.21	147.24
Merged-chr2-45279658-3	chr2	45279571	45279771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162229.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	93.28	70.68	73.02	49.07	130.5	147.38	101.31	91.74	128.24	146.61	92.96	75.18
Merged-chr12-31351430-3	chr12	31351310	31351510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007861)	promoter-TSS (NM_007861)	61.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	87.62	77.72	69.6	70.79	97.37	88.43	85.04	72.34	128.44	123.02	139.19	71.42
Merged-chr8-121906648-3	chr8	121906551	121906751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	1035.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	19.38	31.44	43.35	44.24	32.73	22.89	13.29	30.17	43.47	41.67	54.77	44.17
Merged-chr8-75083998-3	chr8	75083900	75084100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9618.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	156.27	132.3	161.44	144.79	164.87	204.14	156.78	162.42	202.79	181.26	183.41	107.76
Merged-chr10-88346092-3	chr10	88345985	88346185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	10990.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	26.65	20.88	32.52	32.58	45.0	67.42	49.16	41.33	36.39	37.16	52.26	29.13
Merged-chr13-113741975-1	chr13	113741875	113742075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-52533.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	31.5	32.7	54.76	61.54	0.0	0.0	0.0	0.62	0.0	0.0	1.0	0.0
Merged-chr6-99666775-3	chr6	99666665	99666865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	6.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	24.63	18.11	11.98	16.09	17.18	15.68	16.61	17.1	12.39	13.05	17.08	9.71
Merged-chr11-19924343-3	chr11	19924221	19924421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033523)	promoter-TSS (NM_033523)	-121.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	64.61	58.35	77.01	51.88	57.68	104.42	37.54	49.65	68.05	81.84	73.86	45.42
Merged-chr7-127967329-3	chr7	127967263	127967463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347649)	promoter-TSS (NM_001347649)	-116.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	113.06	121.99	99.26	83.66	69.96	101.6	64.44	59.19	83.59	97.41	64.32	75.18
Merged-chr15-19857455-2	chr15	19857362	19857562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	672089.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	89.64	91.3	93.55	98.94	0.0	0.0	0.0	0.03	131.19	137.07	150.24	68.29
Merged-chr9-123058886-3	chr9	123058777	123058977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177911, intron 10 of 13)	L1M4|LINE|L1	24136.0	NM_177911	331046.0	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	32.3	24.65	31.95	34.19	18.41	36.69	40.19	36.06	45.43	41.17	71.35	33.83
Merged-chr5-114654196-3	chr5	114654104	114654304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	4217.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	56.94	28.17	56.48	56.71	70.37	91.56	39.2	61.82	57.43	61.26	56.78	33.52
Merged-chr10-80901014-3	chr10	80900939	80901139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-70.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	209.57	228.64	223.62	175.36	218.46	330.19	132.87	217.88	334.37	360.51	307.52	165.09
Merged-chr5-75933630-3	chr5	75933519	75933719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010612, exon 30 of 30)	3' UTR (NM_010612, exon 30 of 30)	44809.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	83.99	75.71	128.35	125.49	86.73	119.16	83.04	129.48	61.17	64.77	88.44	67.04
Merged-chr16-44063353-3	chr16	44063237	44063437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21329.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	28.67	26.66	34.8	36.6	23.32	19.13	23.25	30.17	26.75	33.64	52.76	25.06
Merged-chr10-88826815-3	chr10	88826703	88826903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175158)	promoter-TSS (NM_175158)	11.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	31.09	29.93	22.25	32.98	43.36	40.45	19.93	32.69	58.02	40.67	61.81	36.03
Merged-chr8-69903309-3	chr8	69903215	69903415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-757.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	128.41	125.26	132.35	110.2	157.91	164.94	102.31	123.93	132.37	153.14	130.14	92.73
Merged-chr7-118484214-3	chr7	118484108	118484308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033380)	TTS (NM_001033380)	7767.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	90.85	103.13	85.0	80.44	73.64	136.72	73.08	115.07	100.7	100.42	127.63	60.15
Merged-chr2-128392577-3	chr2	128392487	128392687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36764.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	54.92	42.51	18.25	31.37	58.91	57.38	22.59	36.59	76.91	69.29	63.31	52.94
Merged-chr7-101896319-3	chr7	101896238	101896438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027532)	promoter-TSS (NM_027532)	7.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	99.33	99.1	87.85	90.49	102.28	109.44	63.78	81.98	111.13	131.55	133.16	61.71
Merged-chr4-108833639-3	chr4	108833539	108833739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027453)	promoter-TSS (NM_027453)	1.0	NM_027453	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	79.55	64.64	46.21	62.74	86.32	75.88	48.16	61.49	99.13	93.39	130.65	62.97
Merged-chr2-102867945-3	chr2	102867856	102868056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	33709.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	25.44	26.91	67.88	50.68	45.41	25.4	38.53	57.76	33.04	31.63	64.82	38.22
Merged-chr2-152332585-3	chr2	152332460	152332660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	79.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	86.01	101.87	130.63	112.21	91.23	98.15	95.33	88.09	121.55	108.45	128.13	85.84
Merged-chr5-124541282-3	chr5	124541187	124541387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019770, intron 1 of 3)	CpG	496.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	23.02	36.72	29.66	16.09	20.05	37.63	30.89	26.27	52.71	42.68	55.78	42.29
Merged-chr17-27635343-3	chr17	27635251	27635451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025963)	promoter-TSS (NM_025963)	-109.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	58.15	45.53	39.36	82.05	81.0	86.86	37.87	45.7	82.61	55.73	87.43	54.2
Merged-chr4-118144519-3	chr4	118144414	118144614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161823, intron 16 of 21)	intron (NM_001161823, intron 16 of 21)	-9568.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	60.97	44.52	94.13	67.17	76.5	88.11	82.38	81.9	86.74	68.29	121.1	53.26
Merged-chr7-102025449-3	chr7	102025344	102025544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-7289.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	185.34	217.07	215.63	209.95	196.37	240.82	191.66	170.08	216.95	219.42	228.13	116.85
Merged-chr11-74493345-3	chr11	74493246	74493446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96812.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	60.57	75.46	54.19	54.3	56.05	72.75	30.56	40.99	73.56	58.24	66.33	34.46
Merged-chr5-28071962-3	chr5	28071872	28072072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	560.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	181.71	139.09	147.18	123.88	152.6	247.41	186.35	201.7	242.71	253.06	285.41	156.01
Merged-chr8-111732185-3	chr8	111732085	111732285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198839)	promoter-TSS (NM_001198839)	-49.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	98.93	95.58	99.83	94.92	142.78	157.41	105.3	148.46	104.44	60.75	137.18	67.35
Merged-chr4-8535614-3	chr4	8535532	8535732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021518)	promoter-TSS (NM_021518)	-12.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	88.84	94.32	90.13	86.88	110.87	113.2	83.37	107.24	137.29	149.63	223.6	79.26
Merged-chr12-95747108-3	chr12	95747089	95747289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	54963.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	37.96	25.91	34.23	19.71	38.05	37.94	33.88	45.0	33.44	44.19	41.71	27.57
Merged-chr10-41519312-4	chr10	41519225	41519425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-175.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	78.34	97.59	83.86	76.02	62.18	86.86	87.36	60.53	96.18	110.46	87.43	67.98
Merged-chr7-31089914-1	chr7	31089814	31090014	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13217.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	5.65	5.79	0.0	8.45	24.55	16.31	17.27	25.71	7.28	4.52	10.55	4.39
Merged-chr9-107576924-3	chr9	107576827	107577027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331161)	promoter-TSS (NM_001331161)	0.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	19.38	24.65	22.82	12.47	27.41	46.1	14.28	34.43	36.98	27.62	56.28	15.04
Merged-chr19-29648438-3	chr19	29648337	29648537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081213)	promoter-TSS (NM_001081213)	-22.0	NM_001362131	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	58.95	74.7	57.05	72.4	80.18	92.19	36.54	86.08	83.79	97.91	105.52	44.8
Merged-chr8-4322661-3	chr8	4322555	4322755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010485, intron 1 of 5)	intron (NM_010485, intron 1 of 5)	2445.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	34.73	27.42	26.81	23.33	33.14	31.67	20.59	43.43	54.48	47.7	33.16	36.34
Merged-chr15-5539570-3	chr15	5539517	5539717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	43299.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	19.79	36.72	26.81	28.15	49.5	62.71	42.52	30.73	42.09	39.67	34.17	27.57
Merged-chr8-116975228-3	chr8	116975145	116975345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	3408.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	29.88	23.39	46.21	37.4	43.77	21.01	29.23	49.74	39.73	21.59	38.69	31.95
Merged-chr12-69198022-7	chr12	69197890	69198090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	439.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	21.4	22.64	10.84	27.35	14.73	11.6	30.23	27.95	20.26	19.58	30.65	22.56
Merged-chr8-108317710-3	chr8	108317615	108317815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	266962.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	58.15	53.32	62.18	54.7	48.27	63.66	27.57	39.11	65.89	62.76	68.84	40.1
Merged-chr3-65974850-3	chr3	65974737	65974937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16588.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	167.98	183.87	181.98	190.24	223.37	224.52	176.05	192.76	262.58	314.32	349.23	156.32
Merged-chr2-12923983-3	chr2	12923877	12924077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305436)	promoter-TSS (NM_001305436)	-64.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	83.99	77.47	82.72	106.58	97.78	109.75	81.71	122.47	134.73	110.97	153.26	81.76
Merged-chr18-53264283-3	chr18	53264183	53264383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	18621.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	75.11	59.36	67.88	75.61	93.68	76.51	73.41	92.69	100.7	80.84	134.67	69.55
Merged-chr17-67350597-3	chr17	67350459	67350659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	3900.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	113.06	99.1	131.78	84.46	119.05	153.34	110.61	130.82	138.67	153.14	143.71	65.79
Merged-chr7-19345068-1	chr7	19344968	19345168	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007948)	promoter-TSS (NM_007948)	-3.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	6.86	5.03	9.13	17.29	19.64	13.48	10.96	7.68	20.06	31.13	36.18	30.7
Merged-chr14-45658212-3	chr14	45658112	45658312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-69.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	116.7	125.26	138.62	101.76	130.5	159.29	109.62	137.27	220.88	255.07	242.2	110.9
Merged-chr8-85142745-3	chr8	85142646	85142846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9178.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	77.93	66.4	99.83	104.97	91.23	93.76	83.71	105.36	132.57	119.0	170.34	96.8
Merged-chr6-65115058-3	chr6	65114951	65115151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	29679.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	51.28	47.79	70.74	86.47	59.32	35.75	71.08	95.36	56.06	60.25	91.45	44.8
Merged-chr10-125749215-3	chr10	125749120	125749320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-216999.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	50.07	45.53	75.3	67.57	56.05	68.36	59.46	83.05	80.84	67.78	149.24	72.05
Merged-chr16-4679801-3	chr16	4679691	4679891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-71.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	111.85	107.91	111.24	101.76	136.23	162.74	89.69	129.81	206.72	168.71	241.19	92.1
Merged-chr6-83795775-3	chr6	83795671	83795871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164187, intron 1 of 9)	intron (NM_001164187, intron 1 of 9)	613.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	34.32	19.12	39.36	21.32	31.5	29.48	13.95	27.25	27.73	20.08	26.13	23.49
Merged-chr9-52048782-1	chr9	52048682	52048882	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_023357)	promoter-TSS (NR_023357)	-77.0	NR_023357	629557.0	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	11.31	12.32	16.54	10.46	11.45	14.42	14.28	10.85	13.18	24.1	16.08	11.59
Merged-chr8-9976426-3	chr8	9976320	9976520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-97.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	276.2	267.63	253.28	279.53	272.87	337.4	328.85	334.12	374.89	367.54	553.23	234.32
Merged-chr6-146578246-2	chr6	146578128	146578328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	317.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	37.96	32.2	31.95	27.75	30.68	42.65	29.9	39.11	54.48	63.77	108.54	47.3
Merged-chr9-118669919-3	chr9	118669830	118670030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 9 of 27)	MER2|DNA|TcMar-Tigger	-41762.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	112.66	100.36	110.67	78.83	188.19	163.06	144.49	159.79	239.57	226.95	390.43	133.14
Merged-chr11-61533848-3	chr11	61533748	61533948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252188, intron 5 of 10)	intron (NM_001252188, intron 5 of 10)	28704.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	24.63	25.15	54.19	74.81	32.32	36.06	55.8	53.1	34.62	31.13	47.23	23.49
Merged-chr9-63377839-3	chr9	63377744	63377944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011840)	promoter-TSS (NM_011840)	8.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	36.75	24.15	37.08	22.52	33.96	30.1	32.55	28.51	28.91	32.13	23.11	24.12
Merged-chr5-92504822-1	chr5	92504722	92504922	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	835.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	12.92	16.35	16.54	16.89	22.91	37.63	16.94	21.45	41.11	28.12	48.24	17.23
Merged-chr10-122754085-3	chr10	122753980	122754180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74765.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	58.55	60.12	57.05	61.13	49.91	49.23	43.51	65.05	79.66	54.73	88.44	46.68
Merged-chr2-118260003-3	chr2	118259920	118260120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3054.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	35.13	29.93	49.63	38.21	44.59	40.45	15.94	28.43	39.34	52.22	40.2	26.0
Merged-chr16-4003816-3	chr16	4003713	4003913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2135.0	NM_177472	52864.0	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	163.13	136.83	127.21	131.12	159.55	146.12	119.91	146.47	174.66	179.75	207.02	112.46
Merged-chr3-94456660-3	chr3	94456561	94456761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13325.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	20.59	21.13	24.53	22.12	22.09	24.15	16.94	26.19	25.57	26.61	24.62	25.37
Merged-chr18-6491114-1	chr18	6491014	6491214	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	-257.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	35.53	18.11	17.68	19.31	35.18	52.99	24.58	31.6	33.24	20.08	52.26	10.34
Merged-chr14-70766778-3	chr14	70766724	70766924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-196.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	104.18	100.36	94.13	85.27	115.78	110.06	64.11	99.62	97.36	114.98	126.12	78.94
Merged-chr2-90509444-3	chr2	90509327	90509527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-30253.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	12.52	11.32	17.68	7.64	39.68	31.98	17.27	27.56	39.93	34.65	43.21	13.47
Merged-chr4-132564147-3	chr4	132564057	132564257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	90.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	23.42	21.38	20.54	32.58	61.37	70.24	45.18	51.95	37.37	50.21	48.74	23.49
Merged-chr9-71187592-3	chr9	71187503	71187703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	18827.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	33.52	21.63	26.24	17.7	20.46	43.9	18.27	16.68	34.42	39.67	36.68	15.04
Merged-chr18-78142222-3	chr18	78142115	78142315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-96.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	83.99	59.61	87.85	91.3	74.87	85.92	80.39	97.35	110.34	94.4	134.67	73.62
Merged-chrX-19276314-1	chrX	19276214	19276414	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-129343.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	7.27	4.53	11.41	7.24	1.23	5.33	9.63	9.84	6.49	5.52	8.04	2.82
Merged-chr11-51858864-3	chr11	51858740	51858940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1210.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	16.56	18.36	23.39	32.18	24.55	15.99	31.56	26.07	20.26	20.08	18.59	15.98
Merged-chr8-19958087-1	chr8	19957987	19958187	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	RMER16_Mm|LTR|ERVK	228511.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	1.21	1.01	3.99	0.4	17.18	17.25	14.95	18.93	2.36	4.52	5.53	0.31
Merged-chr18-12738545-3	chr18	12738465	12738665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2790.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	18.98	19.87	27.38	34.59	36.0	26.97	21.59	52.21	37.57	49.71	68.34	31.95
Merged-chr1-57970099-3	chr1	57970016	57970216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	-32.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	77.93	75.71	63.32	88.48	103.5	105.99	85.04	103.18	110.54	111.47	148.23	67.67
Merged-chr7-92875182-3	chr7	92875077	92875277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-76.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	153.85	151.92	162.58	166.51	184.51	202.25	165.42	210.76	252.55	260.59	353.75	149.11
Merged-chr3-135825297-1	chr3	135825197	135825397	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	18.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	5.25	6.79	9.13	9.65	9.82	6.59	12.62	19.51	12.59	4.02	7.54	8.77
Merged-chr1-191907627-3	chr1	191907523	191907723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030669)	promoter-TSS (NR_030669)	-96.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	16.56	16.1	19.97	25.74	22.5	24.77	17.94	21.98	18.1	15.06	9.04	5.01
Merged-chr5-137294531-3	chr5	137294423	137294623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	-146.0	NM_027356	70240.0	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	88.84	78.48	68.45	73.2	96.96	122.92	39.2	79.79	92.64	98.41	135.67	67.35
Merged-chr19-60659109-2	chr19	60659024	60659224	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-78101.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.63	3.27	4.56	2.41	22.5	15.05	27.9	28.77	12.78	8.03	27.64	11.9
Merged-chr10-81129531-3	chr10	81129437	81129637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6734.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	39.98	41.75	30.8	18.1	31.5	32.61	19.6	41.33	42.68	28.12	40.7	22.24
Merged-chr1-72107289-2	chr1	72107187	72107387	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102092.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	8.88	4.28	13.69	7.64	70.77	79.02	50.49	82.74	66.68	60.75	79.39	54.82
Merged-chr13-64152436-3	chr13	64152348	64152548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361047)	promoter-TSS (NM_001361047)	-75.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	62.59	52.07	49.06	54.7	56.87	61.15	45.18	53.72	83.59	98.91	83.41	53.88
Merged-chr2-19657685-3	chr2	19657587	19657787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027715)	promoter-TSS (NM_027715)	210.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	187.76	148.65	195.1	139.16	157.91	193.16	120.58	167.16	230.13	208.37	300.99	140.66
Merged-chr15-8443687-3	chr15	8443578	8443778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	CpG	785.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	31.09	31.19	42.21	28.15	24.96	46.41	30.56	20.72	55.47	56.24	60.3	48.56
Merged-chr13-67268735-2	chr13	67268646	67268846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_155551, exon 1 of 6)	non-coding (NR_155551, exon 1 of 6)	248.0	NR_155551	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	21.4	28.42	25.67	32.58	26.59	22.58	31.22	16.15	8.85	10.54	7.54	9.4
Merged-chr13-107857199-3	chr13	107857085	107857285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	32879.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	83.59	96.08	109.53	83.26	49.5	76.2	53.81	65.08	109.16	70.8	93.96	56.39
Merged-chr16-76607431-3	chr16	76607327	76607527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58632.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	34.73	43.01	41.07	49.47	44.18	50.8	33.22	49.99	73.76	65.78	50.75	23.81
Merged-chr12-102002315-2	chr12	102002211	102002411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016856, intron 13 of 14)	intron (NM_016856, intron 13 of 14)	26337.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	32.71	24.9	39.93	34.99	1.64	4.7	3.65	3.28	16.33	5.02	24.62	14.1
Merged-chr1-54903070-3	chr1	54902964	54903164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	RMER19B|LTR|ERVK	23323.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	16.15	19.12	29.09	20.11	36.0	19.76	30.56	35.07	20.46	16.07	21.1	17.23
Merged-chr8-25040599-3	chr8	25040490	25040690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-1628.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	36.75	31.94	59.33	43.44	48.68	52.99	38.2	54.7	36.58	49.71	47.74	26.63
Merged-chr13-113949936-3	chr13	113949815	113950015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	155407.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	93.68	41.75	120.94	124.28	67.09	58.95	129.21	215.13	176.43	57.74	257.77	99.31
Merged-chr2-21183008-3	chr2	21182904	21183104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	22361.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	46.03	46.03	92.41	82.45	72.82	49.86	78.06	89.58	52.52	50.21	86.93	36.65
Merged-chr11-20806871-2	chr11	20806785	20806985	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	24223.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.04	4.28	7.42	10.86	13.5	6.27	3.32	15.56	13.57	5.02	18.09	4.39
Merged-chr12-51845115-3	chr12	51844972	51845172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15536.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	47.65	45.02	50.77	52.29	72.0	82.47	56.8	79.85	76.91	62.76	79.39	47.62
Merged-chr17-27911487-3	chr17	27911383	27911583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	2177.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	30.69	18.11	42.78	34.59	15.96	33.55	13.62	17.83	23.6	24.6	39.7	21.3
Merged-chr7-25279479-3	chr7	25279403	25279603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-2676.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	38.76	31.19	61.04	47.06	48.68	42.33	34.21	64.23	68.84	72.81	77.88	45.74
Merged-chr7-51861774-3	chr7	51861687	51861887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-228.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	38.36	33.7	33.66	35.39	65.87	56.13	47.17	58.91	68.64	68.79	113.56	39.47
Merged-chr18-69290129-2	chr18	69290029	69290229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54363.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	32.3	21.63	47.35	50.27	31.91	34.81	24.91	37.07	2.56	2.01	5.53	3.76
Merged-chr11-60728408-3	chr11	60728312	60728512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039559)	promoter-TSS (NR_039559)	14.0	NM_001009927	237781.0	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	61.78	56.34	56.48	48.67	55.23	74.94	61.12	58.21	83.99	102.43	77.88	41.66
Merged-chr3-53463262-3	chr3	53463159	53463359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-1.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	33.92	42.26	39.93	33.38	49.91	62.09	43.85	38.52	73.17	66.28	92.96	41.98
Merged-chr5-113649007-3	chr5	113648908	113649108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	1382.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	117.91	92.81	114.66	97.73	112.91	109.44	119.91	153.11	110.15	122.01	145.72	92.41
Merged-chr7-31151639-3	chr7	31151548	31151748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	-477.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	144.16	177.58	146.04	74.81	131.73	280.96	158.11	94.09	180.95	186.78	179.39	56.39
Merged-chr2-130642878-3	chr2	130642786	130642986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197945)	promoter-TSS (NM_197945)	-42.0	NM_001291027	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	46.44	39.24	45.64	52.69	77.32	86.23	49.49	63.48	77.3	71.8	111.05	36.03
Merged-chr11-104442327-3	chr11	104442264	104442464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-73.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	20.59	25.66	12.55	20.51	13.91	23.52	17.61	9.76	31.86	32.64	50.75	9.4
Merged-chr10-22058701-3	chr10	22058607	22058807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9372.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	39.98	32.45	49.06	33.38	49.91	69.3	30.56	45.31	145.16	135.57	212.05	89.91
Merged-chr5-100566978-3	chr5	100566867	100567067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	5238.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	21.4	22.89	43.35	29.36	45.41	37.0	34.88	46.43	61.17	59.75	89.94	39.78
Merged-chr8-68926674-3	chr8	68926561	68926761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46106.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	33.11	38.23	41.07	20.51	32.73	40.76	21.92	16.96	36.78	31.13	48.74	18.48
Merged-chr10-121374372-3	chr10	121374271	121374471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029364, exon 3 of 14)	exon (NM_029364, exon 3 of 14)	9281.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	28.67	23.14	12.55	16.89	44.18	47.35	18.93	20.33	26.55	23.6	24.62	20.05
Merged-chr11-51263029-3	chr11	51262932	51263132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	25.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	135.27	100.36	117.51	112.21	129.69	138.6	66.77	114.39	153.02	189.8	166.32	104.0
Merged-chr3-54807766-3	chr3	54807706	54807906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133231)	promoter-TSS (NM_133231)	-15.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	67.43	58.35	62.18	56.31	81.41	84.04	85.37	95.16	101.69	103.94	126.12	83.64
Merged-chr4-133546043-3	chr4	133545919	133546119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	8.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	76.32	84.76	75.3	63.15	78.96	98.46	63.44	71.94	104.44	110.97	130.65	63.91
Merged-chr18-68300328-3	chr18	68300246	68300446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026440)	promoter-TSS (NM_026440)	-9.0	NM_026440	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	119.52	128.78	156.88	163.7	133.78	187.2	117.59	178.46	206.33	196.83	254.26	150.99
Merged-chr16-38769773-3	chr16	38769653	38769853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285793)	TTS (NM_001285793)	27494.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	18.17	20.12	35.37	56.31	29.46	29.48	24.58	53.47	43.27	28.12	43.72	30.7
Merged-chr4-150227357-3	chr4	150227239	150227439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-9858.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	26.25	30.94	24.53	54.3	39.27	30.73	25.24	29.58	34.42	24.1	53.26	26.31
Merged-chr6-120179865-3	chr6	120179776	120179976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13947.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	38.76	36.97	42.21	38.21	38.46	31.98	24.91	40.07	67.86	57.24	72.36	45.74
Merged-chr14-73380492-3	chr14	73380393	73380593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4796.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	22.61	21.38	26.81	19.31	20.05	26.65	22.59	26.89	41.5	46.7	40.2	29.13
Merged-chr13-23453558-3	chr13	23453456	23453656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12345.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	27.86	13.58	24.53	16.49	18.41	20.07	10.96	20.5	29.7	24.1	22.11	28.51
Merged-chr10-42269563-3	chr10	42269466	42269666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7176.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	39.98	23.39	33.09	24.13	25.36	59.58	56.47	73.09	45.24	37.66	44.72	27.57
Merged-chr12-119114001-3	chr12	119113910	119114110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124266.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	32.71	19.12	20.54	34.19	24.14	22.89	15.28	38.41	47.4	46.19	36.68	22.56
Merged-chr18-21001750-3	chr18	21001640	21001840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-217.0	NM_207623	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	333.13	342.58	359.96	306.48	331.78	443.08	349.78	398.64	453.37	449.89	553.74	264.08
Merged-chr19-11922342-1	chr19	11922242	11922442	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172635, intron 5 of 18)	intron (NM_172635, intron 5 of 18)	-1386.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	3.23	5.79	13.12	5.63	4.91	3.76	7.31	9.31	17.51	5.52	7.03	0.31
Merged-chr7-34388589-3	chr7	34388516	34388716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	1089.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	29.48	29.43	17.11	17.7	27.82	40.14	14.95	34.23	48.19	47.2	53.77	15.98
Merged-chr4-139169938-3	chr4	139169846	139170046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10709.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	16.15	14.34	22.25	10.05	23.32	22.89	4.65	13.6	25.77	27.11	19.09	10.65
Merged-chr1-92752020-3	chr1	92751933	92752133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79612.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	30.69	16.6	38.79	27.75	32.32	33.24	46.17	44.05	22.03	29.12	30.65	16.29
Merged-chr1-180972359-3	chr1	180972262	180972462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29844.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	50.47	48.29	32.52	32.58	27.41	55.5	32.88	29.38	36.78	46.7	52.76	19.42
Merged-chr10-86990776-3	chr10	86990671	86990871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17171.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	44.82	26.66	78.72	52.29	29.05	35.43	83.04	77.61	71.4	31.13	88.94	44.17
Merged-chr1-53838442-5	chr1	53838326	53838526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 23 of 28)	intron (NM_001001883, intron 23 of 28)	-10998.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	16.96	12.07	10.27	21.72	18.41	14.74	21.26	26.36	26.55	16.57	33.16	15.04
Merged-chr13-37993739-1	chr13	37993639	37993839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360842, intron 1 of 8)	CpG	469.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	15.75	18.61	18.25	10.86	11.86	16.31	9.3	10.15	15.54	18.58	25.63	8.14
Merged-chr3-55817127-3	chr3	55817028	55817228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-29977.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	20.19	18.61	34.8	27.35	13.5	20.38	15.61	30.25	22.82	18.08	26.13	15.66
Merged-chr11-105420889-3	chr11	105420788	105420988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35847.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	62.18	47.29	48.49	33.78	62.18	91.25	48.83	48.93	78.68	73.81	66.83	28.82
Merged-chr14-62908025-3	chr14	62907851	62908051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	42409.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	30.69	12.83	29.66	25.74	15.96	26.03	21.92	28.29	20.85	18.08	22.61	23.49
Merged-chr1-16619355-3	chr1	16619261	16619461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-23.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	76.72	84.26	87.85	97.33	120.28	114.14	63.11	101.52	152.83	133.56	188.43	84.9
Merged-chr12-8674138-3	chr12	8674006	8674206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160219)	promoter-TSS (NM_001160219)	-28.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	117.91	89.54	114.66	93.31	102.68	148.01	73.08	124.18	141.03	136.07	180.89	87.4
Merged-chr15-99370531-3	chr15	99370426	99370626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011711)	promoter-TSS (NM_011711)	-44.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	67.43	62.38	88.42	60.73	92.05	100.97	58.79	62.33	91.26	109.96	88.94	59.52
Merged-chr2-30464163-3	chr2	30464074	30464274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	10025.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	14.94	19.12	31.38	31.37	44.59	21.01	13.95	32.8	39.93	33.64	40.7	26.94
Merged-chr5-137787770-3	chr5	137787671	137787871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005426)	promoter-TSS (NM_001005426)	-31.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	43.61	41.0	40.5	30.57	65.46	52.68	23.92	23.3	55.07	58.24	47.23	32.89
Merged-chr10-7473656-3	chr10	7473578	7473778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-201.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	32.3	35.21	39.93	47.46	34.77	41.71	33.22	51.28	59.01	50.71	55.78	39.16
Merged-chr2-16212966-3	chr2	16212850	16213050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-143354.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	54.11	70.18	87.28	65.16	92.87	125.74	93.67	80.44	115.46	121.51	151.25	53.57
Merged-chr19-23759731-3	chr19	23759668	23759868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	892.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	35.13	25.66	58.76	37.81	39.68	28.22	34.55	63.06	33.24	23.6	57.28	33.21
Merged-chr6-48832672-3	chr6	48832585	48832785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8303.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	50.07	42.51	60.47	49.07	52.37	64.91	67.76	51.39	62.15	49.21	58.29	29.45
Merged-chr13-113596157-3	chr13	113596063	113596263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22401.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	33.52	18.61	55.33	49.47	31.91	21.32	50.16	85.4	40.71	25.61	58.29	31.33
Merged-chr11-50377612-3	chr11	50377539	50377739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-80.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	138.1	154.69	125.5	111.01	141.14	176.86	98.65	90.62	177.41	198.83	145.72	111.52
Merged-chr2-19145587-3	chr2	19145483	19145683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53535.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	36.75	26.16	48.49	36.6	17.18	34.81	19.27	24.2	35.6	21.59	48.74	23.81
Merged-chr15-84995272-3	chr15	84995162	84995362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7291.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	52.49	39.74	29.66	37.0	59.73	52.99	38.86	55.32	60.19	50.21	62.81	57.33
Merged-chr17-28702868-3	chr17	28702779	28702979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	10311.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	44.82	17.1	28.52	43.44	36.82	35.43	37.87	47.24	21.24	18.58	19.6	18.48
Merged-chr1-119504834-3	chr1	119504716	119504916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-34.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	159.5	189.9	153.45	203.92	228.69	213.86	193.66	241.91	231.11	245.53	315.06	168.22
Merged-chr4-3981601-3	chr4	3981510	3981710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38053.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	25.84	26.41	41.07	26.55	33.96	33.55	39.2	54.73	38.75	23.6	45.22	36.03
Merged-chr6-148577884-3	chr6	148577786	148577986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36423.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	23.82	31.69	56.48	50.68	57.68	46.72	40.86	68.78	70.22	42.18	84.92	38.53
Merged-chr5-96807422-3	chr5	96807340	96807540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	14055.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	26.65	29.68	42.78	24.13	41.73	43.27	21.59	37.99	42.48	33.64	61.81	37.59
Merged-chr19-18631409-3	chr19	18631311	18631511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	402.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	54.51	51.31	55.33	60.33	42.55	46.1	28.9	50.97	47.4	38.66	56.28	32.89
Merged-chr17-31853847-3	chr17	31853741	31853941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	1963.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	31.09	28.67	40.5	20.51	47.05	21.64	20.93	32.8	39.73	28.12	45.22	24.75
Merged-chr11-46785159-1	chr11	46785059	46785259	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-25640.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.42	2.01	0.0	0.0	0.0	3.45	1.66	1.29	39.34	23.1	50.75	23.18
Merged-chr5-114806192-3	chr5	114806066	114806266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026718)	TTS (NM_026718)	7810.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	31.9	34.46	46.21	39.82	42.55	58.32	28.23	47.44	46.03	47.7	32.16	33.83
Merged-chr4-122985337-3	chr4	122985231	122985431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10600.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	49.67	30.18	20.54	41.83	26.59	43.59	22.26	31.32	41.5	31.13	52.76	26.94
Merged-chr1-131139576-1	chr1	131139476	131139676	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	4.44	3.02	2.85	1.61	12.27	18.19	1.99	1.46	3.93	7.53	6.03	2.51
Merged-chr8-126592938-3	chr8	126592829	126593029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164598, exon 1 of 2)	exon (NM_001164598, exon 1 of 2)	507.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	14.54	20.12	21.68	16.89	14.32	27.28	22.59	10.09	22.42	23.1	22.11	23.18
Merged-chr5-98034476-3	chr5	98034382	98034582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3520.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	15.75	14.34	31.95	17.7	31.5	20.38	34.21	31.26	22.62	18.58	24.12	8.46
Merged-chr12-91592315-3	chr12	91592205	91592405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1818.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	113.47	112.94	138.05	100.15	133.78	159.92	99.98	133.21	149.48	132.05	139.19	84.9
Merged-chr3-27618038-3	chr3	27617939	27618139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-33044.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	85.6	59.36	94.13	106.58	110.87	102.54	86.03	135.28	95.39	93.39	132.15	75.81
Merged-chr3-27182927-3	chr3	27182854	27183054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178772)	promoter-TSS (NM_178772)	-50.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	136.48	123.0	155.16	156.86	153.82	155.85	136.52	147.06	189.61	173.23	224.11	137.21
Merged-chr15-79774539-3	chr15	79774450	79774650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-83.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	167.17	152.68	146.04	153.24	168.55	206.64	125.56	166.09	201.61	194.31	212.55	125.93
Merged-chr3-36862218-3	chr3	36862121	36862321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-885.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	18.17	15.34	13.69	24.53	23.32	18.19	16.61	23.22	32.06	28.12	35.68	27.88
Merged-chr2-160360639-3	chr2	160360539	160360739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6426.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	58.15	73.45	109.53	111.81	49.91	74.63	74.74	98.47	46.22	67.28	57.79	18.17
Merged-chr16-22265439-3	chr16	22265356	22265556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330555, intron 1 of 9)	CpG	549.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	56.53	48.04	54.76	56.31	50.73	56.13	42.85	32.02	71.79	67.78	68.84	59.21
Merged-chr6-123227747-3	chr6	123227625	123227825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2118.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	30.69	25.4	39.93	30.16	50.73	36.69	31.22	34.43	37.76	22.09	43.21	23.18
Merged-chr14-47418260-3	chr14	47418141	47418341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144553, exon 1 of 19)	5' UTR (NM_144553, exon 1 of 19)	166.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	75.11	70.18	91.84	66.36	99.41	99.72	48.16	62.33	93.62	106.45	112.05	36.97
Merged-chr7-118279711-3	chr7	118279625	118279825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35818.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	31.5	30.18	42.78	30.57	28.23	33.87	13.29	28.68	39.53	41.67	42.71	32.58
Merged-chr17-8846682-3	chr17	8846569	8846769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-3316.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	32.3	23.64	41.07	39.82	36.82	30.73	75.07	60.42	30.09	26.11	43.72	30.39
Merged-chr2-129398459-3	chr2	129398366	129398566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-27327.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	27.46	12.58	35.94	28.56	39.27	39.51	15.28	27.14	46.22	27.11	49.24	32.58
Merged-chr1-37430098-3	chr1	37429970	37430170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356528)	promoter-TSS (NM_001356528)	33.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	167.98	116.21	142.61	143.99	120.69	159.61	119.91	142.35	171.51	182.26	198.48	100.56
Merged-chr4-40313196-3	chr4	40313089	40313289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040663)	promoter-TSS (NR_040663)	-43.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	29.07	35.72	25.1	37.81	35.59	43.59	25.58	38.64	51.34	40.17	26.13	36.03
Merged-chr10-117846114-3	chr10	117846014	117846214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-140.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	149.4	126.77	160.3	117.84	150.14	178.11	119.25	157.57	185.87	206.87	241.69	131.57
Merged-chr1-86359516-3	chr1	86359437	86359637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	-37.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	182.11	183.36	219.06	193.06	203.32	235.81	148.81	195.14	267.5	270.63	326.11	136.58
Merged-chr14-103978977-3	chr14	103978862	103979062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48180.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	34.73	19.12	37.08	38.61	30.27	27.28	35.54	49.91	33.24	24.6	48.74	32.27
Merged-chr11-110475163-1	chr11	110475063	110475263	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-3352.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.48	22.89	11.41	0.8	4.5	19.76	4.98	4.46	22.82	15.57	28.64	5.64
Merged-chr2-153544056-3	chr2	153543975	153544175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14104.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	77.12	84.26	91.84	86.07	99.41	78.08	46.84	92.58	91.26	60.75	77.38	54.2
Merged-chr15-73596083-3	chr15	73595984	73596184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	442.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	53.3	43.01	59.9	48.67	55.23	47.98	62.12	72.39	40.71	29.12	74.87	34.46
Merged-chr15-59864895-3	chr15	59864797	59864997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-69938.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	57.74	67.41	112.38	88.08	119.46	110.38	83.04	121.65	116.05	106.45	145.72	81.76
Merged-chr12-85391277-3	chr12	85391179	85391379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-16562.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	36.75	24.4	46.21	38.21	35.59	19.44	20.59	38.05	53.7	23.6	28.14	24.12
Merged-chr13-64378818-2	chr13	64378679	64378879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8259.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	27.86	26.16	21.11	29.36	22.09	21.01	15.94	28.65	4.52	1.0	2.51	0.0
Merged-chr4-59871150-4	chr4	59871069	59871269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	43887.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	36.75	31.69	57.62	37.0	49.91	45.47	27.57	41.36	47.4	27.62	57.79	30.39
Merged-chr11-79146474-3	chr11	79146371	79146571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013571)	promoter-TSS (NM_013571)	2.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	73.49	75.21	49.06	54.3	81.82	82.16	47.83	51.93	75.13	69.29	67.33	36.97
Merged-chr15-39964066-3	chr15	39963977	39964177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045719, exon 2 of 3)	non-coding (NR_045719, exon 2 of 3)	1428.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	21.4	12.32	34.23	33.78	29.05	17.25	29.56	47.24	16.92	24.1	25.63	14.1
Merged-chr12-65073995-3	chr12	65073803	65074003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	35.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	78.34	91.3	120.37	136.35	128.87	170.27	166.09	157.29	140.24	169.71	189.44	111.52
Merged-chr1-91298290-3	chr1	91298210	91298410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016717)	promoter-TSS (NM_016717)	-28.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	171.21	179.34	230.46	146.0	227.87	251.8	182.69	257.41	228.75	247.04	390.93	165.4
Merged-chr8-104334053-3	chr8	104333958	104334158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6536.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	85.2	68.92	118.08	143.18	115.37	95.95	128.22	135.81	131.39	104.94	152.25	93.04
Merged-chr18-60787197-3	chr18	60787103	60787303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12607.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	15.34	22.13	15.4	14.48	20.05	26.65	15.28	19.85	32.65	22.59	43.21	27.57
Merged-chr5-144964099-3	chr5	144963997	144964197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	1733.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	41.99	21.88	17.11	29.36	27.82	38.88	28.57	31.23	30.88	33.14	47.23	24.43
Merged-chr17-23677481-3	chr17	23677394	23677594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013749)	promoter-TSS (NM_013749)	-45.0	NM_013749	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	41.59	37.23	36.51	56.31	54.82	48.92	31.89	49.82	54.29	33.64	60.8	20.36
Merged-chr6-30048023-3	chr6	30047899	30048099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	11.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	57.34	41.5	46.21	47.86	54.41	50.8	28.9	52.18	48.19	68.79	66.83	35.4
Merged-chr5-145201888-3	chr5	145201771	145201971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023322)	promoter-TSS (NM_023322)	11.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	86.41	78.73	74.73	79.23	82.23	107.56	57.47	65.19	99.72	73.31	96.98	57.33
Merged-chr16-3929331-3	chr16	3929216	3929416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20307.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	43.21	36.47	29.66	49.07	55.23	52.99	39.2	56.41	30.88	27.62	45.73	28.82
Merged-chr1-88227274-3	chr1	88227142	88227342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281466, intron 1 of 41)	intron (NM_001281466, intron 1 of 41)	222.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	48.05	51.56	61.04	77.22	82.64	77.14	107.62	98.83	92.25	77.83	148.73	58.27
Merged-chr13-28616816-3	chr13	28616726	28616926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	94047.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	107.41	84.76	135.77	156.46	118.64	120.1	118.59	142.12	125.49	123.52	141.2	82.39
Merged-chrX-71364756-3	chrX	71364645	71364845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016985)	promoter-TSS (NM_016985)	-15.0	NM_001313702	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	31.5	20.37	34.8	23.33	33.14	42.65	28.23	36.98	35.6	30.13	39.19	25.37
Merged-chr11-90249342-3	chr11	90249247	90249447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-129.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	260.45	252.28	273.25	327.39	348.97	369.08	273.71	308.5	332.6	346.96	463.79	200.49
Merged-chr11-79530523-3	chr11	79530437	79530637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033711)	promoter-TSS (NM_001033711)	72.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	56.13	38.23	46.21	28.15	54.0	58.64	36.54	40.57	64.51	65.78	57.28	40.72
Merged-chr16-81454710-3	chr16	81454613	81454813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 5 of 17)	intron (NM_001113208, intron 5 of 17)	254016.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	20.59	33.7	39.36	41.43	56.46	47.66	32.22	76.23	61.37	64.27	98.49	46.36
Merged-chr8-111854370-3	chr8	111854258	111854458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011801)	promoter-TSS (NM_011801)	-48.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	107.01	111.43	122.08	127.5	173.05	163.69	106.29	162.03	191.57	157.16	272.85	92.1
Merged-chr8-11475903-3	chr8	11475811	11476011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2018.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	22.61	22.13	40.5	32.18	51.55	44.21	38.86	51.06	57.04	47.7	66.33	35.71
Merged-chr5-146833046-4	chr5	146832981	146833181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	191.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	39.98	43.77	26.81	26.95	37.23	52.05	32.22	29.86	39.73	70.29	53.77	36.03
Merged-chr19-38224148-3	chr19	38224068	38224268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081075)	promoter-TSS (NM_001081075)	-36.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	49.67	55.34	43.93	38.21	49.91	37.32	39.86	45.53	46.03	40.17	46.23	16.92
Merged-chr4-147938307-3	chr4	147938219	147938419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1543.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	36.75	36.97	44.5	48.67	24.14	18.81	31.22	62.75	27.34	20.59	29.14	22.87
Merged-chr15-57693983-3	chr15	57693894	57694094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-673.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	56.53	51.81	52.48	23.73	51.14	117.59	37.2	37.96	77.1	65.78	68.34	41.66
Merged-chr10-67096339-3	chr10	67096238	67096438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	CpG	650.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	45.63	49.05	36.51	32.58	57.27	55.5	33.55	64.43	54.88	34.14	56.28	31.64
Merged-chr8-47713443-3	chr8	47713341	47713541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359133, intron 1 of 2)	CpG	490.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	9.69	15.34	16.54	20.11	11.86	19.76	21.92	12.42	13.77	23.1	21.61	10.65
Merged-chr10-119063595-3	chr10	119063502	119063702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13103.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	41.59	28.93	66.17	66.77	96.14	83.72	87.03	129.0	121.75	147.62	183.91	83.64
Merged-chr13-28754463-3	chr13	28754359	28754559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-43586.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	46.84	38.74	54.19	49.87	62.18	36.69	39.2	71.16	34.22	39.67	45.73	20.68
Merged-chr4-137468617-3	chr4	137468506	137468706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008305)	promoter-TSS (NM_008305)	-197.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	41.99	37.48	26.24	32.58	75.28	73.06	37.2	50.72	77.69	54.23	53.26	45.11
Merged-chr1-56089696-1	chr1	56089596	56089796	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70718.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.81	4.53	0.0	0.0	28.23	34.49	40.19	51.17	1.38	3.01	3.01	2.51
Merged-chr8-107293962-2	chr8	107293853	107294053	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286260, intron 1 of 12)	CpG	483.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	9.69	10.82	11.41	8.45	14.73	19.13	20.93	11.27	14.75	20.59	22.61	17.54
Merged-chr8-109704713-3	chr8	109704586	109704786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-860.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	22.61	11.57	49.63	34.59	40.09	20.07	40.52	60.28	26.16	28.62	49.24	24.12
Merged-chr2-102901535-3	chr2	102901422	102901622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177785, exon 1 of 16)	5' UTR (NM_001177785, exon 1 of 16)	143.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	65.82	68.92	66.17	51.08	112.91	141.11	73.41	78.95	110.93	123.52	137.68	77.06
Merged-chr16-32877729-3	chr16	32877645	32877845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-39.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	75.11	70.43	67.88	52.29	62.18	74.94	55.47	54.25	86.35	85.36	98.99	55.45
Merged-chr18-62188933-3	chr18	62188811	62189011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8811.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	33.92	39.49	35.37	37.0	42.55	49.23	20.26	36.9	38.75	60.25	65.32	35.09
Merged-chr9-22125805-3	chr9	22125708	22125908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007388)	TTS (NM_007388)	4790.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	34.73	35.97	47.35	53.09	42.96	42.65	34.88	45.03	39.93	43.68	57.28	28.51
Merged-chr8-66860210-3	chr8	66860115	66860315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	-2.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	100.95	78.48	71.31	73.2	89.59	103.79	71.42	121.68	99.33	89.37	146.22	64.22
Merged-chr14-102884010-3	chr14	102883891	102884091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98641.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	29.07	22.64	31.95	34.19	19.23	21.32	14.28	32.19	25.96	20.08	48.24	30.07
Merged-chr8-109608514-3	chr8	109608401	109608601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020046, exon 1 of 9)	5' UTR (NM_020046, exon 1 of 9)	172.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	130.83	135.57	103.82	169.73	165.69	177.17	132.87	169.63	154.2	142.1	171.35	103.06
Merged-chr11-67589057-3	chr11	67588940	67589140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2540.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	41.19	42.01	38.79	32.58	52.77	46.1	30.89	38.89	68.05	51.21	46.73	40.41
Merged-chr14-26437776-3	chr14	26437672	26437872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80225.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	74.3	34.96	55.9	61.54	74.46	98.46	71.42	89.44	56.45	67.28	93.96	45.42
Merged-chr7-83647800-3	chr7	83647692	83647892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 16 of 18)	intron (NM_001360088, intron 16 of 18)	7703.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	25.44	18.11	33.09	28.56	35.18	25.4	25.24	28.65	35.01	41.17	35.17	16.29
Merged-chr6-129533315-3	chr6	129533234	129533434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-50.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	26.65	32.7	21.11	26.95	19.64	46.1	42.19	24.08	19.28	52.72	39.19	19.11
Merged-chr6-51533623-3	chr6	51533536	51533736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9376.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	32.71	38.23	36.51	21.72	43.36	59.58	31.56	40.93	47.4	57.74	31.66	23.18
Merged-chr16-22297108-3	chr16	22296991	22297191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2103.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	28.27	14.84	25.67	17.7	30.27	18.5	29.23	30.48	25.77	27.11	54.77	24.43
Merged-chr10-17613473-3	chr10	17613383	17613583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-109745.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	20.19	19.12	35.37	18.1	35.18	32.3	16.28	28.99	41.7	34.65	36.68	19.74
Merged-chr7-67242182-3	chr7	67242084	67242284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19568.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	49.67	46.03	59.9	51.88	44.59	70.55	45.18	63.2	65.3	76.32	83.91	38.85
Merged-chr2-27442420-3	chr2	27442340	27442540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360790)	promoter-TSS (NM_001360790)	4.0	NM_001360792	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	61.78	49.8	42.78	36.6	76.5	85.92	41.85	52.93	74.74	95.4	80.4	45.11
Merged-chr7-126861883-3	chr7	126861792	126861992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172746)	promoter-TSS (NM_172746)	-80.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	28.67	24.9	27.38	27.75	22.91	35.43	22.59	29.16	39.73	37.16	40.7	40.72
Merged-chr9-120054999-3	chr9	120054900	120055100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	13296.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	24.23	18.11	28.52	22.93	34.77	40.14	32.88	25.68	43.66	40.17	23.62	29.76
Merged-chr14-68598164-3	chr14	68598064	68598264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16092.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	18.17	14.59	29.66	30.97	39.27	41.08	42.52	21.0	41.7	37.66	33.67	24.12
Merged-chr5-32136497-3	chr5	32136394	32136594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	22.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	52.09	30.94	57.62	25.74	28.23	36.06	31.22	25.49	47.4	55.23	73.36	35.09
Merged-chr5-81037324-3	chr5	81037240	81037440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	15747.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	21.8	23.14	23.39	31.77	25.36	32.93	26.57	56.44	29.9	24.6	39.7	26.94
Merged-chr11-98773951-3	chr11	98773845	98774045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145434, intron 1 of 7)	CpG	1432.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	220.07	219.33	213.92	198.28	214.78	313.57	203.29	185.24	295.82	349.97	277.87	185.45
Merged-chr2-25193603-3	chr2	25193499	25193699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	3214.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	29.88	24.65	32.52	28.56	35.18	38.26	26.57	28.57	56.65	45.19	49.75	34.77
Merged-chr8-106935652-3	chr8	106935505	106935705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009229)	promoter-TSS (NM_009229)	-145.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	46.44	34.71	47.35	47.86	51.96	51.74	35.54	42.36	42.09	43.68	30.15	29.13
Merged-chr4-88415272-3	chr4	88415166	88415366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 6 of 6)	L1MA6|LINE|L1	23660.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	30.28	23.9	47.35	48.26	42.14	40.14	33.55	62.02	44.25	29.12	60.3	25.06
Merged-chr16-90199197-4	chr16	90199111	90199311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21531.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	22.61	20.88	36.51	20.51	32.73	26.34	29.56	33.0	31.67	29.62	35.68	25.37
Merged-chr7-114276156-3	chr7	114276055	114276255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-39.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	135.27	125.26	130.63	134.74	120.28	156.79	72.75	98.52	193.54	159.17	165.32	98.05
Merged-chr15-51991185-1	chr15	51991085	51991285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009009, intron 1 of 13)	CpG	575.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	18.98	20.37	20.54	19.31	30.27	29.79	28.9	22.68	24.39	21.09	26.63	21.93
Merged-chr13-20092525-3	chr13	20092409	20092609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	2002.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	54.92	57.6	70.74	81.24	74.05	65.54	65.11	76.54	97.95	95.9	119.59	55.45
Merged-chr2-160452173-3	chr2	160452081	160452281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85116.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	29.88	11.82	17.11	26.55	26.18	24.77	23.25	31.35	24.98	18.58	38.69	14.41
Merged-chr5-41844344-3	chr5	41844203	41844403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	12.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	135.27	150.41	126.64	180.99	157.5	142.68	183.36	143.33	171.71	162.68	198.98	113.72
Merged-chr8-57504974-1	chr8	57504874	57505074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_126556)	promoter-TSS (NR_126556)	-841.0	NR_126556	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	85.6	77.47	70.74	54.7	0.82	0.63	0.66	0.93	1.18	1.0	0.0	0.0
Merged-chr4-118135055-3	chr4	118134940	118135140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-94.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	113.06	114.7	154.59	119.86	126.82	119.47	103.64	128.69	143.39	133.56	168.33	72.36
Merged-chr16-91407000-3	chr16	91406895	91407095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	760.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	72.68	72.94	51.34	27.75	81.41	130.76	42.52	46.15	88.9	87.87	75.87	32.58
Merged-chr10-118811305-3	chr10	118811193	118811393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57610.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	105.39	125.01	103.82	98.94	79.78	146.12	108.62	100.26	179.77	164.69	194.46	87.4
Merged-chr13-3918153-3	chr13	3918038	3918238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019671)	promoter-TSS (NM_019671)	82.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	49.26	51.81	40.5	43.84	63.82	57.07	82.05	64.46	39.53	46.19	52.76	30.07
Merged-chr15-31510623-3	chr15	31510519	31510719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	20418.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	16.15	11.82	25.67	22.93	25.36	26.03	13.29	28.68	35.01	29.62	47.23	19.74
Merged-chr4-134468347-3	chr4	134468246	134468446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	26.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	48.05	49.05	35.37	30.57	31.5	56.13	17.61	30.22	67.07	72.81	87.93	40.72
Merged-chr13-107899835-3	chr13	107899739	107899939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-9775.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	96.91	78.48	106.1	139.16	110.05	97.52	118.25	152.94	91.07	88.87	140.19	73.93
Merged-chr12-85340133-3	chr12	85340047	85340247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-785.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	52.49	29.43	46.78	27.35	58.91	44.53	28.9	54.67	61.37	46.19	78.89	35.09
Merged-chr19-6363697-3	chr19	6363550	6363750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-40.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	263.68	268.88	248.72	240.11	285.96	363.12	237.17	242.78	301.13	389.13	384.4	194.85
Merged-chr18-37969827-3	chr18	37969709	37969909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175684)	promoter-TSS (NM_175684)	-78.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	69.05	68.67	75.87	55.5	129.69	93.13	37.54	70.57	107.59	76.82	131.65	59.52
Merged-chr13-110600198-3	chr13	110600087	110600287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	205143.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	38.36	21.38	26.24	24.94	50.32	49.86	29.9	52.88	52.91	46.7	60.8	28.51
Merged-chr9-61022742-3	chr9	61022654	61022854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5685.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	97.31	116.71	123.79	168.52	85.09	116.96	119.25	97.99	122.73	135.57	169.84	93.98
Merged-chr9-88953352-3	chr9	88953214	88953414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3606.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	144.96	150.67	141.47	155.25	118.23	206.64	147.82	118.68	62.55	62.76	53.26	23.49
Merged-chr5-123694675-3	chr5	123694576	123694776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10315.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	57.74	59.36	59.9	41.43	60.96	95.33	48.83	52.74	69.63	76.32	75.87	42.6
Merged-chr17-32036403-3	chr17	32036296	32036496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028244, exon 1 of 16)	5' UTR (NM_028244, exon 1 of 16)	234.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	27.86	23.64	22.82	28.15	40.09	30.1	8.97	24.14	35.01	46.7	42.71	20.36
Merged-chr12-17348340-3	chr12	17348244	17348444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-149.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	62.18	51.31	113.52	74.0	70.77	73.69	65.44	75.03	105.23	81.34	105.02	57.33
Merged-chr9-110681333-3	chr9	110681228	110681428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	24825.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	34.73	24.15	22.25	31.37	35.59	35.75	15.61	30.67	60.78	34.14	52.26	30.07
Merged-chr6-39379473-3	chr6	39379361	39379561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1754.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	49.26	45.53	64.46	43.44	53.18	61.46	48.83	52.43	53.5	46.19	48.74	35.4
Merged-chr9-22002785-3	chr9	22002684	22002884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	-150.0	NM_029939	77609.0	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	243.08	256.06	277.81	271.48	270.01	384.75	273.71	298.12	429.57	468.46	430.13	253.12
Merged-chr12-17657782-3	chr12	17657728	17657928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-32981.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	21.4	25.66	39.36	30.16	46.23	43.9	48.5	32.02	43.47	47.2	44.72	36.34
Merged-chr11-120013342-3	chr11	120013278	120013478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198787, intron 9 of 13)	intron (NM_001198787, intron 9 of 13)	-1389.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	19.79	31.44	23.96	35.39	31.5	36.06	34.55	38.5	37.17	31.63	32.66	30.39
Merged-chr19-8871524-3	chr19	8871412	8871612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362044)	promoter-TSS (NM_001362044)	-36.0	NM_146093	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	117.5	98.35	89.56	83.26	96.14	115.39	60.79	86.5	114.08	119.0	108.03	75.18
Merged-chr10-71365215-1	chr10	71365115	71365315	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 2 of 5)	intron (NM_027184, intron 2 of 5)	17452.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.65	3.02	2.28	11.26	22.91	15.99	34.21	40.04	5.51	8.54	6.53	3.76
Merged-chr6-52012629-3	chr6	52012506	52012706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-57.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	134.87	152.17	118.08	117.84	180.82	202.57	149.14	128.27	207.51	204.36	208.03	116.85
Merged-chr6-118455182-3	chr6	118455081	118455281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361901, intron 1 of 5)	CpG	325.0	NM_028335	72720.0	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	21.0	20.63	18.25	21.32	38.86	50.17	25.24	42.48	28.72	32.64	43.72	17.86
Merged-chr19-55556397-3	chr19	55556298	55556498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145806.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	27.46	30.69	46.78	34.19	34.36	44.21	33.88	35.75	44.65	41.67	44.22	21.93
Merged-chr3-96564868-3	chr3	96564767	96564967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	1934.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	54.51	33.2	77.58	61.94	66.68	61.15	33.55	70.01	50.35	47.2	75.37	46.36
Merged-chr10-81643703-3	chr10	81643609	81643809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5360.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	94.08	103.13	88.99	113.42	132.14	115.39	109.62	114.0	99.33	87.87	110.04	60.15
Merged-chr2-79206423-3	chr2	79206308	79206508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49018.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	53.7	30.43	50.77	47.06	45.41	27.28	51.15	52.6	45.04	23.6	39.7	26.63
Merged-chr11-3514772-3	chr11	3514677	3514877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053267)	promoter-TSS (NM_053267)	93.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	34.32	31.19	31.95	43.44	42.96	52.05	39.53	47.44	31.86	21.09	29.65	19.42
Merged-chr11-119928432-3	chr11	119928314	119928514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	14604.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	42.4	40.75	43.35	39.82	29.46	43.27	36.87	47.86	46.81	33.14	45.22	31.01
Merged-chr15-84680973-2	chr15	84680905	84681105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146061)	promoter-TSS (NM_146061)	7.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	25.84	27.67	26.81	22.93	26.59	31.36	20.59	22.68	5.31	6.03	18.59	6.27
Merged-chr10-70245122-3	chr10	70245004	70245204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025807)	promoter-TSS (NM_025807)	-172.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	30.69	22.13	25.67	26.14	17.59	26.65	26.24	27.06	29.11	29.12	30.65	20.68
Merged-chr16-98082522-3	chr16	98082443	98082643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015491)	promoter-TSS (NR_015491)	-104.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	37.15	21.63	37.65	50.27	74.87	70.87	62.78	66.76	67.46	61.76	72.86	38.85
Merged-chr5-135187097-3	chr5	135186964	135187164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-259.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	151.83	167.27	162.01	160.48	179.19	245.53	167.75	153.06	234.45	258.08	254.76	143.48
Merged-chr19-6304937-3	chr19	6304863	6305063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	83.99	48.04	69.03	51.08	62.59	104.42	61.78	49.26	79.07	83.85	82.91	43.23
Merged-chr3-144720304-3	chr3	144720236	144720436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-1.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	171.21	145.89	128.35	140.37	113.73	184.38	135.86	187.35	218.32	207.37	337.67	153.19
Merged-chr3-95624914-3	chr3	95624832	95625032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-48.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	117.5	128.03	124.36	154.44	149.32	164.63	124.56	148.71	174.86	188.29	187.93	85.52
Merged-chr16-15637481-3	chr16	15637391	15637591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	-91.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	264.08	234.17	230.46	261.83	218.05	280.33	191.66	225.0	377.05	298.75	362.79	165.4
Merged-chr11-118107241-3	chr11	118107137	118107337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 18 of 80)	intron (NM_001167746, intron 18 of 80)	21982.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	12.52	15.85	32.52	12.87	28.64	30.1	35.21	27.59	42.09	30.63	25.12	24.43
Merged-chr10-42270850-3	chr10	42270762	42270962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5880.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	140.12	120.98	114.66	178.17	110.05	148.63	119.91	155.66	163.84	160.67	154.26	107.45
Merged-chr4-139574452-3	chr4	139574306	139574506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-314.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	279.43	293.78	327.44	321.36	330.56	359.35	275.7	283.04	316.86	336.91	461.78	216.15
Merged-chr2-35756701-3	chr2	35756591	35756791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59959.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	41.99	39.99	56.48	44.24	28.23	37.94	30.56	41.61	30.88	30.13	50.25	18.17
Merged-chr4-40821779-3	chr4	40821668	40821868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	28370.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	16.15	27.92	14.26	6.84	33.14	50.8	14.95	19.71	41.11	46.7	46.23	16.6
Merged-chr7-28981935-3	chr7	28981829	28982029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-41.0	NM_001285942	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	185.75	162.74	153.45	180.59	148.1	152.71	127.89	124.51	179.38	195.82	167.83	134.7
Merged-chr2-3424007-3	chr2	3423914	3424114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146114)	promoter-TSS (NM_146114)	-117.0	NM_146114	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	247.93	216.31	215.06	250.97	272.46	291.62	216.91	310.88	282.64	305.28	368.82	197.67
Merged-chr14-55604113-3	chr14	55604009	55604209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	124.0	NM_001159417	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	57.34	69.17	41.07	49.47	82.23	74.32	40.19	53.41	67.27	82.85	76.88	52.0
Merged-chr18-37926195-4	chr18	37926067	37926267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	9309.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	10.9	10.31	15.4	20.11	10.64	10.35	13.29	13.63	19.28	21.59	16.58	18.17
Merged-chr18-74393130-1	chr18	74393030	74393230	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49489.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	4.85	6.54	1.71	7.64	23.32	15.68	11.96	27.98	4.72	5.52	4.02	0.94
Merged-chr2-129129697-3	chr2	129129635	129129835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025395)	promoter-TSS (NM_025395)	35.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	83.59	71.18	89.56	86.88	95.32	111.95	71.08	91.77	103.85	81.34	123.11	61.71
Merged-chr12-119398418-3	chr12	119398316	119398516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44994.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	65.82	69.92	66.17	69.58	66.27	104.42	85.37	67.85	102.28	111.47	99.99	53.88
Merged-chr14-102911775-3	chr14	102911682	102911882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70850.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	25.44	15.34	41.07	34.19	56.87	41.71	67.43	74.97	49.76	53.22	102.51	31.95
Merged-chr4-143412766-3	chr4	143412670	143412870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355724, exon 1 of 4)	5' UTR (NM_001355724, exon 1 of 4)	344.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	130.43	135.32	109.53	115.83	141.96	174.03	83.71	115.26	166.0	205.36	164.81	98.99
Merged-chr2-114139243-2	chr2	114139149	114139349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	11321.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	27.46	39.24	33.66	43.04	38.86	23.83	31.89	60.98	2.16	0.0	0.5	1.88
Merged-chrX-164979520-3	chrX	164979384	164979584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 2 of 14)	intron (NM_029730, intron 2 of 14)	891.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	25.44	16.85	16.54	22.12	24.96	15.05	20.59	27.7	33.24	16.07	33.67	21.93
Merged-chr8-110919835-3	chr8	110919730	110919930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-35.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	13.73	27.42	34.8	32.98	31.09	47.98	52.82	46.96	23.6	36.65	41.2	39.47
Merged-chr5-134214584-3	chr5	134214471	134214671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359852, intron 13 of 14)	intron (NM_001359852, intron 13 of 14)	15054.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	15.34	16.6	15.4	23.33	38.46	39.51	33.55	30.28	25.57	22.59	43.21	15.66
Merged-chr9-66593517-1	chr9	66593417	66593617	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-402.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	15.34	14.84	12.55	11.66	23.73	19.76	11.96	16.88	22.23	22.59	26.13	12.84
Merged-chr13-42976323-3	chr13	42976222	42976422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 2 of 12)	MIR|SINE|MIR	110075.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	14.94	6.79	20.54	21.72	27.82	36.06	30.56	35.83	25.77	23.1	26.63	14.41
Merged-chr12-8208237-3	chr12	8208146	8208346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167767, intron 1 of 5)	CpG	119.0	NM_001167767	68832.0	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	79.55	74.2	58.76	60.73	72.41	79.33	85.04	78.65	66.09	82.85	84.92	56.39
Merged-chr18-88866637-3	chr18	88866548	88866748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	27559.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	17.77	15.85	24.53	35.39	40.91	33.55	21.59	50.69	39.14	26.61	37.18	16.29
Merged-chr19-60890202-3	chr19	60890104	60890304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	455.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	74.3	75.96	75.87	66.77	78.14	100.97	60.46	92.66	80.64	65.27	123.11	53.88
Merged-chr3-98025663-3	chr3	98025568	98025768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12130.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	46.44	36.47	53.05	35.8	42.14	26.97	33.88	48.25	35.8	30.63	61.3	31.01
Merged-chr1-183369632-3	chr1	183369521	183369721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177389)	promoter-TSS (NM_177389)	-56.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	75.11	62.13	61.04	65.56	99.41	84.04	46.5	82.65	109.36	91.38	164.81	79.26
Merged-chr16-90301102-3	chr16	90300998	90301198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16595.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	60.97	55.59	68.45	76.42	55.64	68.67	34.21	62.33	58.02	52.22	56.28	33.52
Merged-chr2-5861042-3	chr2	5860952	5861152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016918, exon 4 of 10)	exon (NM_016918, exon 4 of 10)	1882.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	17.36	8.3	27.38	27.75	26.18	17.25	36.87	36.25	21.24	21.09	28.14	18.8
Merged-chr2-119208601-1	chr2	119208501	119208701	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164827)	promoter-TSS (NM_001164827)	-119.0	NM_001164827	72008.0	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	42.4	40.5	33.66	32.58	42.14	51.11	38.86	44.13	38.75	41.17	53.26	27.57
Merged-chr11-117076804-3	chr11	117076694	117076894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027059)	promoter-TSS (NR_027059)	11.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	32.71	26.66	12.55	22.52	45.82	34.18	13.95	25.71	17.11	33.64	41.71	14.1
Merged-chr11-117960186-3	chr11	117960097	117960297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9169.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	118.31	79.23	69.6	102.96	124.78	155.85	74.41	76.54	142.01	136.07	126.63	77.38
Merged-chr8-70776790-3	chr8	70776680	70776880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	-68.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	159.1	138.09	96.98	90.09	144.0	154.59	82.05	73.12	163.64	190.8	112.05	108.7
Merged-chr17-88132931-5	chr17	88132824	88133024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7412.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	52.49	49.55	40.5	50.27	37.23	71.49	65.44	42.11	47.99	72.3	73.86	42.29
Merged-chr5-117389083-3	chr5	117388976	117389176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028128)	promoter-TSS (NM_028128)	-53.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	112.66	80.24	65.6	92.51	98.18	116.96	58.79	95.72	120.18	126.03	155.27	75.81
Merged-chr15-59887972-3	chr15	59887801	59888001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	16.96	17.61	14.26	10.05	22.5	33.24	10.63	22.68	19.47	24.6	18.59	19.11
Merged-chr1-93668950-3	chr1	93668847	93669047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16628.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	31.5	25.4	30.23	24.13	47.46	44.53	33.88	41.24	27.54	36.15	56.78	25.69
Merged-chr11-79520119-3	chr11	79520010	79520210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3652.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	109.83	87.53	90.7	74.81	74.46	86.55	35.54	55.71	76.71	83.85	93.96	40.72
Merged-chr7-116409667-3	chr7	116409587	116409787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33771.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	30.69	25.15	33.09	28.96	43.36	63.66	47.5	56.97	39.34	44.19	31.66	19.42
Merged-chr14-120275615-3	chr14	120275521	120275721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-48.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	103.78	87.03	86.71	97.33	137.05	161.8	92.68	124.07	163.25	139.08	206.02	79.26
Merged-chr16-93914059-2	chr16	93913957	93914157	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15510.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	7.27	10.56	8.56	5.63	16.77	15.99	13.62	13.63	118.21	108.96	113.06	67.04
Merged-chr6-125447462-3	chr6	125447375	125447575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47285.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	31.9	20.37	41.07	38.21	23.32	46.41	40.19	59.33	43.86	22.09	67.33	32.58
Merged-chr1-169531524-3	chr1	169531416	169531616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-52.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	127.2	128.78	96.41	99.75	133.37	173.41	104.3	129.73	180.17	177.75	145.22	84.9
Merged-chr7-109519621-1	chr7	109519521	109519721	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028079)	promoter-TSS (NR_028079)	426.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	25.04	24.4	17.68	16.09	20.46	42.33	28.9	17.72	40.52	38.66	40.7	32.27
Merged-chr12-78225945-2	chr12	78225844	78226044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-711.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	47.24	49.05	65.6	37.4	53.59	63.34	49.83	48.48	51.93	40.67	74.37	26.94
Merged-chr12-117560640-3	chr12	117560561	117560761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	44182.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	69.86	65.9	94.7	136.35	77.73	77.45	120.25	149.89	164.82	120.0	199.99	98.99
Merged-chr17-81658046-3	chr17	81657939	81658139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	80348.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	19.79	17.36	23.39	24.53	26.18	22.26	25.24	33.36	41.7	19.58	19.6	19.42
Merged-chr10-45019623-3	chr10	45019519	45019719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47595.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	83.18	81.75	107.25	109.0	97.37	115.71	85.37	127.09	125.68	102.43	128.13	67.04
Merged-chr12-69360837-3	chr12	69360758	69360958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3682.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	21.0	25.4	23.96	26.14	24.14	38.26	22.26	24.64	28.72	32.13	35.68	22.24
Merged-chr6-5339491-1	chr6	5339391	5339591	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3_Mus|LINE|L1	-41118.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	1.21	3.27	0.0	1.61	4.91	1.25	2.66	0.45	176.23	139.08	203.0	91.16
Merged-chr11-102429230-3	chr11	102429090	102429290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1132.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	28.27	19.37	14.83	20.11	14.73	31.36	25.91	29.07	31.47	50.71	42.71	24.43
Merged-chrUn_JH584304-67826-1	chrUn_JH584304	67726	67926	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-8137.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	19.28	17.57	7.54	20.68
Merged-chr7-100992157-3	chr7	100992044	100992244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19854.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	45.23	45.28	47.35	24.53	71.59	87.17	42.19	48.25	67.46	63.27	45.22	31.01
Merged-chr12-98746313-3	chr12	98746216	98746416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-652.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	22.21	24.4	20.54	18.5	31.09	31.98	19.6	27.28	31.86	27.62	47.23	23.49
Merged-chr10-59981014-3	chr10	59980903	59981103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21802.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	54.51	35.72	55.9	54.7	56.87	40.76	56.47	112.82	39.14	49.21	47.74	44.17
Merged-chr17-17374189-3	chr17	17374074	17374274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-158.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	173.23	132.3	130.63	153.24	194.73	176.23	118.92	161.75	194.72	180.26	232.15	100.87
Merged-chr11-117824731-3	chr11	117824641	117824841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009387, exon 3 of 7)	exon (NM_009387, exon 3 of 7)	-1178.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	60.97	52.57	43.93	51.48	53.59	66.48	40.52	37.51	58.42	32.64	96.98	36.65
Merged-chr13-34874421-3	chr13	34874321	34874521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1073.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	133.25	121.74	129.49	127.5	137.87	151.14	100.98	133.79	123.91	156.66	188.43	111.52
Merged-chr7-99182853-3	chr7	99182757	99182957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026384)	promoter-TSS (NM_026384)	-144.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	44.01	76.72	34.23	44.24	69.55	71.81	51.15	34.46	57.43	53.22	41.71	36.03
Merged-chr13-73467165-3	chr13	73467009	73467209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145376)	promoter-TSS (NM_145376)	-274.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	44.42	48.8	47.35	32.98	48.27	60.52	69.76	40.4	58.02	54.73	74.87	37.91
Merged-chr6-37617555-3	chr6	37617448	37617648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87375.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	47.24	41.75	54.76	82.45	58.91	39.2	32.55	70.71	64.12	62.76	60.3	42.29
Merged-chrX-13281589-1	chrX	13281489	13281689	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010028, intron 1 of 16)	CpG	567.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	19.38	20.63	13.12	4.83	20.86	31.98	31.89	9.14	28.13	25.61	16.58	15.98
Merged-chr12-85745944-3	chr12	85745834	85746034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-605.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	29.48	24.9	28.52	21.72	30.68	46.1	12.29	26.55	28.52	36.15	49.24	18.8
Merged-chr10-91181805-3	chr10	91181712	91181912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10193.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	77.93	70.43	71.88	89.69	81.82	102.85	69.42	93.65	133.55	126.03	178.38	88.34
Merged-chr4-44012607-3	chr4	44012517	44012717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-26.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	68.24	69.42	91.84	71.19	66.27	65.22	45.51	63.31	78.68	64.77	118.08	51.69
Merged-chr5-105616813-3	chr5	105616703	105616903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83166.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	50.47	54.08	70.74	55.1	51.14	43.27	22.92	41.89	59.99	45.19	92.96	26.0
Merged-chr12-84038358-3	chr12	84038262	84038462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134247)	promoter-TSS (NM_134247)	-17.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	27.86	19.12	17.68	15.69	22.5	26.03	20.93	24.03	28.91	32.13	31.66	23.81
Merged-chr19-47459076-3	chr19	47458963	47459163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	5348.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	41.19	31.69	43.93	37.81	56.46	57.07	47.5	51.73	22.23	34.14	39.19	20.05
Merged-chr10-121475871-2	chr10	121475766	121475966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	CpG	384.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	25.04	23.9	20.54	31.77	29.86	19.76	36.21	30.98	30.49	30.13	43.21	31.01
Merged-chr8-124242377-3	chr8	124242259	124242459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	MIR|SINE|MIR	10965.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	86.41	83.0	141.47	136.35	105.14	103.79	118.59	132.56	161.09	168.71	215.57	115.91
Merged-chr9-60999234-3	chr9	60999156	60999356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-17813.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	29.88	28.93	35.37	38.61	47.87	34.49	40.86	58.93	44.84	52.22	37.18	33.52
Merged-chr16-95708341-3	chr16	95708243	95708443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	5936.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	182.52	158.21	187.11	173.75	175.51	204.45	157.78	189.14	214.39	213.39	208.53	142.22
Merged-chr7-118479331-3	chr7	118479196	118479396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12679.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	67.43	53.83	99.83	97.33	73.64	95.64	76.4	125.61	99.72	72.81	114.06	69.86
Merged-chr14-31172947-3	chr14	31172838	31173038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022656, intron 19 of 20)	intron (NM_022656, intron 19 of 20)	-4297.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	35.53	20.12	32.52	50.68	63.0	67.1	70.75	64.29	60.19	63.27	74.87	31.01
Merged-chr17-56462319-3	chr17	56462266	56462466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-145.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	43.21	54.08	41.64	70.79	65.46	69.3	58.13	58.99	59.4	53.22	71.86	53.57
Merged-chr7-45707009-3	chr7	45706921	45707121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016974, intron 2 of 3)	CpG	1774.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	60.57	58.35	50.77	33.78	49.91	40.76	35.87	48.45	69.23	57.74	70.35	53.26
Merged-chr12-100725235-3	chr12	100725118	100725318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330702)	promoter-TSS (NM_001330702)	-98.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	344.84	343.34	336.0	380.48	385.78	383.81	343.8	350.52	443.14	500.6	610.52	298.86
Merged-chr2-34906985-3	chr2	34906883	34907083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028716, intron 4 of 14)	intron (NM_028716, intron 4 of 14)	6993.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	86.01	86.78	73.02	80.04	103.5	127.94	75.73	94.74	101.29	92.39	174.86	74.87
Merged-chr7-34918634-3	chr7	34918538	34918738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	6231.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	83.59	49.8	74.16	83.26	83.05	111.32	71.08	130.23	92.84	82.85	122.1	50.12
Merged-chr5-64344486-3	chr5	64344393	64344593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114136.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	57.74	35.72	40.5	45.45	75.68	78.71	55.14	72.79	99.33	114.98	148.73	58.58
Merged-chr4-44756208-3	chr4	44756113	44756313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-346.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	37.55	28.42	20.54	22.93	36.0	41.39	25.91	33.95	54.09	30.13	54.27	23.81
Merged-chr2-155517928-3	chr2	155517835	155518035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019811)	promoter-TSS (NM_019811)	-108.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	182.92	179.34	153.45	192.65	212.73	282.84	152.8	166.8	247.04	265.11	297.97	144.42
Merged-chr6-97449927-3	chr6	97449818	97450018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9368.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	87.62	70.43	77.58	76.42	106.78	143.93	106.96	83.61	96.77	91.89	104.01	72.99
Merged-chr11-116621452-3	chr11	116621370	116621570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	2782.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	83.99	65.65	55.33	44.64	56.46	110.69	52.15	42.2	123.13	87.37	96.48	49.81
Merged-chr9-4376378-3	chr9	4376276	4376476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-176.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	298.4	301.58	310.33	403.81	307.65	374.09	372.36	493.29	470.67	450.89	618.05	294.16
Merged-chr5-122318334-3	chr5	122318238	122318438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177242, intron 4 of 5)	intron (NM_177242, intron 4 of 5)	33940.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	29.88	39.74	45.64	56.31	60.14	62.71	23.92	40.07	43.07	32.13	51.76	24.43
Merged-chr11-53299860-3	chr11	53299757	53299957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008300, intron 1 of 18)	CpG	622.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	27.46	26.91	27.38	34.19	37.64	44.53	36.54	32.92	46.42	33.14	63.82	44.8
Merged-chr2-60209837-3	chr2	60209742	60209942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-94.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	87.62	95.33	91.84	87.28	116.19	123.55	76.07	96.48	179.38	160.17	169.84	90.22
Merged-chr5-53998369-3	chr5	53998265	53998465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081103)	promoter-TSS (NM_001081103)	-158.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	192.21	175.31	204.79	207.54	196.37	191.59	157.45	243.14	260.22	246.53	292.95	167.91
Merged-chr11-103400205-3	chr11	103400104	103400304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 2 of 11)	L1MB7|LINE|L1	12460.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	81.16	66.4	43.35	61.13	56.05	94.39	38.53	48.14	95.79	96.4	64.82	52.63
Merged-chr13-97137956-3	chr13	97137847	97138047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271464)	promoter-TSS (NM_001271464)	10.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	70.66	80.49	78.15	94.11	85.91	86.55	59.13	78.93	115.65	119.0	138.69	79.26
Merged-chr4-107935409-3	chr4	107935322	107935522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-11833.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	21.4	24.65	24.53	18.5	25.36	34.18	30.89	43.82	33.24	21.59	38.69	19.11
Merged-chr5-31697858-3	chr5	31697779	31697979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-171.0	NM_181281	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	53.7	75.71	46.78	69.18	56.05	88.43	50.49	51.67	76.71	89.37	95.97	64.53
Merged-chr4-65545723-3	chr4	65545625	65545825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207109, intron 17 of 22)	Lx9|LINE|L1	-59261.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	30.28	16.1	37.08	43.84	65.05	44.84	65.44	64.57	56.65	48.7	67.84	43.54
Merged-chr11-103315528-3	chr11	103315436	103315636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29166.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	34.32	38.99	52.48	21.72	31.09	70.87	42.85	21.98	55.27	46.19	42.71	21.93
Merged-chr12-3740284-3	chr12	3740247	3740447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-66633.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	31.9	23.39	17.68	28.15	10.23	35.12	16.94	16.46	19.87	25.11	26.63	17.23
Merged-chr6-136683851-3	chr6	136683745	136683945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER74C|LTR|ERVL	-21952.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	48.05	32.45	94.7	70.79	79.37	58.95	59.79	93.56	52.32	50.71	101.5	46.68
Merged-chr19-4113889-3	chr19	4113768	4113968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_075078)	TTS (NR_075078)	7707.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	26.25	25.15	33.09	10.86	26.18	29.79	24.25	31.68	39.14	28.12	45.73	17.23
Merged-chr2-9879732-3	chr2	9879633	9879833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1133.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	69.86	77.97	56.48	67.57	72.0	100.03	49.49	82.85	72.97	41.67	93.46	46.68
Merged-chr5-73292748-3	chr5	73292657	73292857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159889)	promoter-TSS (NM_001159889)	-37.0	NM_001159887	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	125.98	143.12	103.25	119.86	177.55	181.87	124.56	137.22	208.29	212.89	248.73	155.69
Merged-chr9-107264051-3	chr9	107263941	107264141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	25355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	19.79	24.15	27.38	14.48	39.68	43.59	25.91	28.51	44.84	46.7	52.26	18.17
Merged-chr2-90580578-3	chr2	90580501	90580701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	46.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	51.69	71.18	54.76	48.26	65.87	80.59	64.77	48.11	102.87	150.63	106.02	46.36
Merged-chr4-125114842-3	chr4	125114732	125114932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13049.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	36.75	22.64	32.52	18.1	14.32	16.31	18.6	26.78	29.9	27.11	46.73	24.43
Merged-chr11-70667527-3	chr11	70667439	70667639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167669, intron 1 of 6)	intron (NM_001167669, intron 1 of 6)	1877.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	60.57	51.31	70.17	49.07	72.82	77.14	52.15	54.42	66.09	96.91	73.36	62.34
Merged-chr2-62664263-3	chr2	62664182	62664382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-45.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	61.78	62.38	45.64	59.12	83.87	87.49	89.69	94.74	91.07	108.96	112.56	52.32
Merged-chr12-12231793-3	chr12	12231694	12231894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30345.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	26.65	27.67	19.4	32.98	24.55	29.48	20.93	26.36	40.91	39.16	39.19	17.23
Merged-chr12-69365993-3	chr12	69365893	69366093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6157.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	52.09	50.05	64.46	35.39	48.68	66.16	47.17	42.45	66.68	52.22	50.75	31.01
Merged-chr1-177258534-3	chr1	177258436	177258636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9769.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	44.01	48.29	42.78	50.68	48.68	57.7	61.12	48.2	41.5	61.76	42.21	30.39
Merged-chr5-121586648-3	chr5	121586521	121586721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	7203.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	13.33	17.61	16.54	20.51	23.73	30.1	24.25	27.36	29.5	22.09	30.15	18.8
Merged-chr17-47768847-3	chr17	47768750	47768950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-16894.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	92.87	64.64	88.42	66.36	97.37	97.83	76.4	94.79	120.77	106.95	136.17	77.06
Merged-chr6-125010219-3	chr6	125010129	125010329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	-152.0	NM_001347452	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	27.86	21.63	20.54	32.58	34.77	31.67	25.91	31.85	42.88	23.6	44.22	25.06
Merged-chr1-75180409-3	chr1	75180304	75180504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023732)	promoter-TSS (NM_023732)	-12.0	NM_023732	74104.0	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	59.36	39.24	33.09	36.2	74.05	60.21	61.12	86.61	73.17	70.29	123.11	35.09
Merged-chr7-55855783-3	chr7	55855687	55855887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	13716.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	80.76	57.6	130.63	102.56	67.5	81.22	68.1	73.51	46.81	48.2	100.5	37.28
Merged-chr11-70489839-3	chr11	70489720	70489920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15454.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	115.08	143.87	122.65	155.65	119.05	166.19	123.9	108.93	144.57	142.1	155.77	84.27
Merged-chr8-13501403-3	chr8	13501292	13501492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-6857.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	35.13	32.7	54.76	49.87	40.5	41.08	39.53	55.54	38.75	40.17	45.73	39.47
Merged-chr11-45697610-3	chr11	45697526	45697726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110457.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	44.42	48.8	54.19	47.86	32.73	26.34	22.59	51.95	35.01	37.66	49.24	18.8
Merged-chr16-10785165-3	chr16	10785078	10785278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271603, intron 1 of 1)	CpG	358.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	67.43	83.51	49.63	55.91	58.5	78.71	38.2	49.4	89.3	64.77	93.96	61.71
Merged-chr2-29889668-3	chr2	29889554	29889754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	-66.0	NM_001177661	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	132.44	117.21	93.55	125.49	128.87	161.18	88.69	85.26	168.17	185.78	160.29	95.23
Merged-chr5-34660263-3	chr5	34660162	34660362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029278)	promoter-TSS (NM_029278)	-114.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	210.78	229.65	164.86	215.58	185.73	250.86	152.13	165.2	269.66	283.19	240.69	140.97
Merged-chr17-85562667-1	chr17	85562567	85562767	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	55729.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.83	3.27	2.28	10.46	8.18	8.78	26.24	15.36	3.93	4.52	4.52	3.76
Merged-chr12-87406579-1	chr12	87406479	87406679	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	12.52	4.78	3.42	0.4	5.32	12.86	7.31	4.32	14.75	19.58	12.56	6.89
Merged-chr15-76511972-3	chr15	76511876	76512076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010046)	promoter-TSS (NM_010046)	18.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	220.47	227.13	191.67	197.08	209.05	315.14	138.85	176.58	215.96	255.57	276.37	161.33
Merged-chr18-83870955-3	chr18	83870835	83871035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215627.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	60.17	52.32	56.48	57.92	98.59	104.42	66.43	62.61	106.01	87.37	108.54	33.21
Merged-chr6-72161896-3	chr6	72161773	72161973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-38676.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	69.05	61.62	78.72	57.92	56.05	67.42	51.15	56.41	49.57	51.21	70.35	38.53
Merged-chr16-49855891-1	chr16	49855791	49855991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	CpG	237.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	46.03	54.58	44.5	46.25	53.59	72.44	69.76	46.32	46.22	56.74	71.86	52.32
Merged-chrX-144234664-3	chrX	144234567	144234767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63123.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	18.17	17.86	27.38	26.14	27.0	32.3	31.56	42.7	25.18	27.11	35.17	18.48
Merged-chr6-17749179-3	chr6	17749093	17749293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083315)	promoter-TSS (NM_001083315)	23.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	14.13	13.08	12.55	18.5	15.96	30.42	22.92	25.91	37.37	29.12	57.79	20.36
Merged-chr19-21406979-1	chr19	21406879	21407079	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	65682.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.21	2.52	1.71	2.41	3.27	14.11	20.93	16.51	1.97	0.5	7.03	5.33
Merged-chr16-44724408-3	chr16	44724302	44724502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145972, exon 1 of 9)	exon (NM_145972, exon 1 of 9)	101.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	110.64	158.71	146.04	148.41	147.28	177.17	216.24	159.48	128.04	139.08	188.43	110.27
Merged-chr14-65834041-3	chr14	65833936	65834136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	-67.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	216.03	159.22	137.48	194.66	225.01	272.18	137.19	194.27	236.42	226.95	255.76	119.35
Merged-chr4-136147812-3	chr4	136147712	136147912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	3990.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	103.37	108.41	151.17	129.91	118.64	157.41	134.53	133.68	164.63	157.66	187.93	112.15
Merged-chr7-35066149-3	chr7	35066050	35066250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9584.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	25.44	16.6	31.95	15.69	47.87	18.5	15.94	27.42	41.5	22.09	59.29	20.68
Merged-chr16-95831738-3	chr16	95831625	95831825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66988.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	61.78	50.05	52.48	89.69	88.78	76.2	81.71	121.96	86.74	77.83	146.22	78.63
Merged-chr5-92435276-3	chr5	92435175	92435375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183392)	promoter-TSS (NM_183392)	-76.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	246.32	221.09	247.01	252.98	257.33	294.44	236.84	247.01	275.76	336.41	375.86	187.96
Merged-chr4-154911406-3	chr4	154911308	154911508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12365.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	160.71	126.02	160.87	135.94	179.19	217.93	127.22	149.92	209.87	212.89	253.75	128.13
Merged-chr11-5789408-3	chr11	5789315	5789515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	932.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	23.82	25.4	29.09	27.75	28.64	41.08	19.27	24.42	45.83	35.15	39.19	23.18
Merged-chr8-71632126-3	chr8	71632018	71632218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-1012.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	69.45	54.33	35.37	43.04	62.18	61.15	38.2	49.65	76.31	82.85	75.87	45.74
Merged-chr17-84101846-3	chr17	84101742	84101942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23182.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	40.78	38.48	45.64	52.69	67.91	58.64	50.82	69.14	54.88	32.13	62.81	35.4
Merged-chr4-128962512-3	chr4	128962413	128962613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-58.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	60.97	42.51	45.64	42.63	51.14	80.9	42.19	41.58	80.45	88.87	81.4	31.33
Merged-chr13-113423991-3	chr13	113423861	113424061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78883.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	21.0	20.63	21.11	17.29	19.23	37.0	29.23	37.57	34.03	22.09	39.19	21.93
Merged-chr7-127912467-3	chr7	127912370	127912570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026370)	promoter-TSS (NM_026370)	-47.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	30.28	29.43	21.68	24.53	31.91	31.36	18.93	27.14	49.76	36.15	56.78	36.03
Merged-chr7-80018752-3	chr7	80018781	80018981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-5933.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	10.9	14.34	25.1	22.52	12.68	19.44	16.61	8.94	20.65	15.57	21.1	15.66
Merged-chr1-180365319-3	chr1	180365250	180365450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-34801.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	79.95	52.32	80.43	75.21	94.91	106.3	45.51	96.2	73.17	107.95	121.6	74.87
Merged-chr11-75348421-3	chr11	75348327	75348527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	-6.0	NM_001102611	319822.0	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	123.56	103.13	98.12	110.6	116.59	139.54	86.03	118.94	146.73	150.63	137.68	91.47
Merged-chr4-132747810-3	chr4	132747710	132747910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9361.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	81.97	77.47	95.84	60.73	104.73	94.7	61.45	72.03	103.65	86.86	116.07	46.68
Merged-chr8-4677459-3	chr8	4677373	4677573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	64303.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	128.0	151.42	105.53	96.53	141.96	178.42	79.72	108.31	197.67	178.75	209.03	109.64
Merged-chr12-3871064-3	chr12	3870959	3871159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8815.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	41.19	33.45	45.07	30.16	36.0	42.96	44.84	54.56	62.94	37.66	24.12	30.07
Merged-chr2-158175623-3	chr2	158175525	158175725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16383.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	165.15	123.25	204.22	168.12	167.73	224.52	155.46	210.76	189.8	207.37	269.83	141.28
Merged-chr16-38105643-3	chr16	38105542	38105742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-16382.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	21.8	17.86	26.24	26.55	25.77	28.85	23.25	37.85	35.01	37.66	38.19	26.94
Merged-chr14-16249363-3	chr14	16249291	16249491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	77.0	NM_001362432	59007.0	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	102.56	137.08	130.63	162.09	112.91	149.57	184.02	134.19	137.68	148.62	175.37	80.51
Merged-chr11-57645335-3	chr11	57645216	57645416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-126.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	37.15	57.35	35.37	52.69	33.55	51.74	43.51	28.21	43.27	47.2	42.21	24.43
Merged-chr7-127042468-3	chr7	127042348	127042548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145588)	promoter-TSS (NM_145588)	-28.0	NM_145588	110033.0	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	41.19	31.44	18.25	26.14	35.59	42.65	25.24	24.11	56.84	55.23	44.72	23.49
Merged-chr7-30280008-3	chr7	30279827	30280027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-167.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	14.54	11.82	12.55	12.07	16.36	19.13	14.95	11.97	15.74	16.07	12.06	12.22
Merged-chr2-60878068-4	chr2	60877859	60878059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	3479.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	24.63	11.07	26.81	25.34	23.73	28.22	26.91	24.03	25.77	20.08	35.68	18.48
Merged-chr12-85385887-3	chr12	85385786	85385986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11169.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	113.06	106.65	154.02	137.95	148.1	153.96	121.57	129.98	121.55	96.91	180.89	72.99
Merged-chr2-167102246-2	chr2	167102146	167102346	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36953.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	13.73	3.27	2.28	4.42	16.77	17.87	10.3	12.06	19.08	20.59	23.11	13.16
Merged-chr2-129373456-3	chr2	129373363	129373563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015474, intron 2 of 2)	intron (NR_015474, intron 2 of 2)	-2324.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	167.98	128.78	118.08	183.4	133.78	150.83	108.95	104.75	162.86	168.21	194.96	109.96
Merged-chr8-122906604-3	chr8	122906512	122906712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58238.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	18.17	13.83	26.81	21.72	38.05	37.0	30.89	39.2	30.29	42.18	36.18	17.54
Merged-chr1-87828496-3	chr1	87828375	87828575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	24795.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	101.35	70.43	106.1	143.99	83.46	66.48	88.69	113.75	67.66	54.23	74.87	60.46
Merged-chr1-191198108-3	chr1	191197968	191198168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14735.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	56.13	45.28	61.61	60.33	58.91	72.12	55.14	79.63	79.27	71.8	89.44	54.2
Merged-chr1-162565155-3	chr1	162565047	162565247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5368.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	117.91	105.89	173.99	162.89	172.23	165.88	198.64	248.61	205.15	182.77	328.12	158.51
Merged-chr8-36122776-5	chr8	36122659	36122859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27931.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	31.5	46.78	34.8	52.69	38.46	54.25	52.82	46.12	43.66	68.79	47.74	49.81
Merged-chr9-40709509-2	chr9	40709401	40709601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	23537.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	23.82	16.35	18.83	29.36	30.27	26.34	27.24	30.11	0.0	0.0	0.0	0.94
Merged-chr5-137307659-3	chr5	137307541	137307741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	33.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	46.03	34.46	42.78	41.02	43.36	52.99	31.89	34.37	36.19	47.2	33.16	22.87
Merged-chr10-34019711-3	chr10	34019611	34019811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-95.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	207.95	179.59	176.84	173.35	210.28	245.53	173.39	211.49	232.49	210.88	254.26	120.61
Merged-chr9-26997223-3	chr9	26997090	26997290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025862, intron 1 of 10)	ORR1A4|LTR|ERVL-MaLR	2359.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	44.82	45.53	48.49	45.05	28.64	61.15	37.87	60.65	43.66	43.68	76.88	20.99
Merged-chr2-154791372-3	chr2	154791265	154791465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001139511, exon 1 of 8)	5' UTR (NM_001139511, exon 1 of 8)	255.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	72.28	93.82	32.52	29.36	49.09	82.47	32.88	32.58	105.82	144.1	76.38	56.07
Merged-chr5-65486050-3	chr5	65485977	65486177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	6758.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	40.78	35.97	46.78	30.16	44.18	101.28	51.82	35.41	40.52	44.69	52.26	31.33
Merged-chr14-61684362-3	chr14	61684263	61684463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1990.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	21.0	22.39	21.68	18.1	21.68	28.85	13.29	23.07	34.42	34.65	39.19	28.82
Merged-chr9-120866899-1	chr9	120866799	120866999	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48351.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.02	0.25	6.28	5.23	9.82	3.14	3.65	11.5	0.39	0.5	0.5	0.63
Merged-chr9-57836939-3	chr9	57836836	57837036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2702.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	121.95	129.03	109.53	114.63	127.64	178.74	116.26	108.84	165.41	181.26	204.01	99.62
Merged-chr10-127592625-2	chr10	127592534	127592734	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 10 of 88)	intron (NM_008512, intron 10 of 88)	28514.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.27	4.53	4.56	5.63	21.27	15.37	14.95	21.56	17.31	19.58	21.1	14.1
Merged-chr19-43511208-1	chr19	43511108	43511308	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	13397.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	6.06	2.52	7.99	4.42	8.18	6.27	5.65	10.88	4.72	7.03	5.53	4.39
Merged-chr16-23280669-3	chr16	23280568	23280768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	L3|LINE|CR1	-9802.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	34.73	22.89	56.48	40.22	46.23	31.98	50.82	59.78	23.8	25.61	56.78	26.63
Merged-chr3-75293446-3	chr3	75293322	75293522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23344.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	159.1	160.22	182.55	183.0	129.28	138.29	156.12	131.36	141.22	119.5	139.69	72.36
Merged-chr3-30856175-3	chr3	30856129	30856329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001134385, exon 1 of 4)	5' UTR (NM_001134385, exon 1 of 4)	279.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	12.52	14.09	10.84	19.71	19.23	13.48	19.6	13.6	17.7	27.62	22.61	16.6
Merged-chr18-34624893-3	chr18	34624798	34624998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289606)	promoter-TSS (NM_001289606)	-35.0	NM_001361136	78656.0	Mm.45602	NM_030147	ENSMUSG00000003778	Brd8	2610007E11Rik|4432404P07Rik|SMAP	bromodomain containing 8	protein-coding	38.76	30.94	45.64	39.82	51.14	58.01	28.23	33.22	58.81	55.73	46.23	32.89
Merged-chr2-25608435-3	chr2	25608299	25608499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024616)	promoter-TSS (NM_001024616)	47.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	26.65	25.4	20.54	21.32	27.0	32.93	19.27	19.54	33.04	28.12	29.65	26.31
Merged-chr12-71807482-2	chr12	71807387	71807587	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-23581.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	9.69	3.52	5.7	16.49	13.91	16.31	13.95	29.8	20.85	19.58	39.7	18.17
Merged-chr1-13659981-3	chr1	13659859	13660059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	550.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	13.33	10.06	19.4	21.32	13.5	22.89	11.96	13.15	24.59	23.1	28.64	19.74
Merged-chr5-32854333-3	chr5	32854230	32854430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194340)	promoter-TSS (NM_194340)	-100.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	79.95	72.69	104.39	82.85	67.5	114.45	68.1	71.36	108.38	101.43	104.01	65.47
Merged-chr10-21200955-3	chr10	21200845	21201045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14001.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	28.67	34.96	44.5	24.53	23.32	52.37	29.9	16.01	32.26	38.16	27.13	14.72
Merged-chr16-91761980-3	chr16	91761897	91762097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	32626.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	41.19	22.89	48.49	36.6	33.96	31.04	31.22	29.47	39.73	32.13	23.11	16.29
Merged-chr14-54398908-5	chr14	54398815	54399015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	10557.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	22.21	14.59	39.93	26.14	31.09	31.98	57.8	54.56	14.75	14.06	21.1	9.4
Merged-chr18-14657582-3	chr18	14657464	14657664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25350.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	11.71	17.1	29.09	22.93	13.5	23.83	20.26	16.4	23.6	21.59	34.17	24.12
Merged-chr2-167805156-3	chr2	167805070	167805270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113993.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	42.8	33.7	62.75	42.23	47.46	39.2	39.53	49.15	52.71	56.74	58.29	38.22
Merged-chr2-91082292-4	chr2	91082174	91082374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11959.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	21.8	18.11	19.97	14.48	17.18	30.73	25.24	20.13	23.21	20.08	24.62	13.16
Merged-chr5-110780626-3	chr5	110780519	110780719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347390)	promoter-TSS (NM_001347390)	-4.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	71.47	75.46	52.48	44.24	60.14	106.3	45.18	56.58	113.49	129.54	97.98	53.88
Merged-chr3-108850750-3	chr3	108850651	108850851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10249.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	53.3	43.51	73.02	45.85	46.64	51.74	41.19	40.18	59.4	61.26	39.7	42.92
Merged-chr17-35808135-3	chr17	35808051	35808251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13562.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	44.82	35.97	59.9	53.49	56.87	52.37	50.16	43.82	75.13	62.26	46.23	60.46
Merged-chr3-37748148-3	chr3	37748037	37748237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23777.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	16.15	22.89	22.82	17.29	49.5	45.15	21.26	25.46	26.55	26.61	26.63	12.53
Merged-chr17-65886065-2	chr17	65885964	65886164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-309.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	17.77	10.31	20.54	10.05	19.64	19.76	13.62	14.58	25.37	21.59	24.62	14.1
Merged-chr18-9449472-2	chr18	9449353	9449553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026484, intron 1 of 9)	CpG	701.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	14.13	13.08	22.82	20.51	11.05	15.37	18.93	18.87	16.72	14.06	22.61	17.23
Merged-chr19-59345868-3	chr19	59345788	59345988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-108.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	51.69	39.74	51.91	42.63	62.18	61.77	43.51	58.32	68.25	67.78	87.43	37.59
Merged-chr13-3610123-3	chr13	3610023	3610223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360838, intron 1 of 19)	intron (NM_001360838, intron 1 of 19)	985.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	25.04	23.9	35.94	27.35	29.86	31.04	17.61	22.57	38.75	38.16	30.65	31.95
Merged-chr4-139599124-3	chr4	139599015	139599215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-23779.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	84.39	83.0	116.94	102.96	79.78	114.45	76.4	84.11	85.95	129.54	119.59	47.93
Merged-chr2-114139993-2	chr2	114139898	114140098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	10572.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	17.36	21.88	30.8	26.14	17.18	15.68	13.95	27.36	0.2	0.0	0.0	0.63
Merged-chr7-109752265-3	chr7	109752201	109752401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-38.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	33.92	20.12	30.23	31.37	40.5	48.6	21.26	42.2	48.98	63.27	84.92	56.7
Merged-chr19-61140857-3	chr19	61140761	61140961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131953)	promoter-TSS (NR_131953)	-21.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	84.8	101.37	96.41	98.94	116.19	126.68	77.06	111.93	115.65	135.07	176.87	76.44
Merged-chr14-26994402-3	chr14	26994394	26994594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5868.0	NM_010420	15209.0	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	11.31	13.83	27.38	19.71	17.18	8.47	20.93	18.34	18.69	12.55	22.61	12.53
Merged-chr18-14783142-3	chr18	14783053	14783253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-92.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	224.51	208.27	195.1	198.28	232.37	248.35	198.31	225.17	299.95	315.82	300.48	143.79
Merged-chrX-139432861-3	chrX	139432778	139432978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47489.0	NM_175326	102871.0	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325|Radx	RIKEN cDNA D330045A20 gene	protein-coding	25.44	21.88	30.8	24.94	24.14	28.22	17.27	38.16	33.44	27.62	45.73	22.24
Merged-chr11-121743365-3	chr11	121743265	121743465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40938.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	34.73	22.64	30.8	14.48	36.0	27.59	21.59	32.89	31.47	26.11	28.14	28.82
Merged-chr5-140767907-3	chr5	140767812	140768012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	43785.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	29.07	28.17	31.95	29.36	32.73	25.4	30.23	40.32	28.32	26.11	29.14	18.8
Merged-chr3-148959525-3	chr3	148959443	148959643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4908.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	22.21	35.21	26.24	26.14	72.82	74.63	60.79	74.19	49.37	46.19	67.84	18.8
Merged-chr6-71200746-3	chr6	71200647	71200847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017399, intron 1 of 3)	intron (NM_017399, intron 1 of 3)	868.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	19.38	17.61	19.4	17.7	32.32	24.77	37.87	20.38	40.12	39.67	40.7	19.42
Merged-chr9-107580696-3	chr9	107580594	107580794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019750)	promoter-TSS (NM_019750)	25.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	75.11	51.56	43.93	29.76	65.05	71.81	27.57	48.14	77.69	62.76	75.37	36.65
Merged-chr1-87035924-3	chr1	87035793	87035993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	54035.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	45.63	45.78	75.87	64.35	44.18	34.81	58.46	84.39	30.09	24.1	36.68	34.15
Merged-chr7-24463004-3	chr7	24462898	24463098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011113, intron 1 of 6)	intron (NM_011113, intron 1 of 6)	515.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	19.38	13.33	6.85	20.51	26.18	30.1	29.9	31.71	37.17	51.21	25.63	20.99
Merged-chr13-24698856-3	chr13	24698732	24698932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080381, intron 13 of 14)	intron (NM_001080381, intron 13 of 14)	60184.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	50.88	82.5	74.16	42.63	63.82	93.76	73.41	49.74	81.43	70.29	62.31	30.07
Merged-chr3-135690898-3	chr3	135690811	135691011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	CpG	636.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	15.75	29.93	43.35	28.15	24.14	27.28	28.9	23.92	32.26	33.14	20.6	27.88
Merged-chrX-13072702-3	chrX	13072620	13072820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009481, intron 1 of 44)	CpG	1222.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	24.23	21.38	38.22	28.15	39.27	39.51	40.86	38.58	49.37	54.73	46.73	28.82
Merged-chr10-121571705-3	chr10	121571608	121571808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019786, intron 5 of 20)	intron (NM_019786, intron 5 of 20)	15086.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	47.24	51.81	51.34	32.18	33.55	60.52	28.23	43.21	79.46	86.36	89.94	50.12
Merged-chr19-12457888-1	chr19	12457788	12457988	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2891.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	16.15	15.34	13.12	7.64	11.05	20.07	9.97	15.11	20.65	28.12	26.63	17.54
Merged-chr6-122852906-3	chr6	122852826	122853026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009779, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3231.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	42.4	40.5	39.36	53.09	37.64	47.04	31.22	50.89	45.43	42.68	70.85	30.39
Merged-chr11-54691412-3	chr11	54691323	54691523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175258, exon 26 of 28)	exon (NM_175258, exon 26 of 28)	95277.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	106.2	95.58	103.25	110.6	105.55	95.01	90.68	95.72	98.54	112.47	107.53	71.74
Merged-chr3-95977301-3	chr3	95977210	95977410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-8200.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	83.99	62.88	88.42	96.53	91.64	81.22	96.99	104.78	51.14	55.23	66.33	50.12
Merged-chr12-84748311-3	chr12	84748209	84748409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	24803.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	60.17	53.07	92.98	69.58	74.05	71.81	56.8	78.53	83.2	89.37	57.28	64.53
Merged-chr1-34410056-3	chr1	34409946	34410146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23153.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	21.8	15.59	28.52	20.11	21.68	17.87	18.93	22.35	27.54	21.59	32.66	19.42
Merged-chr13-94743673-3	chr13	94743556	94743756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45287.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	23.42	39.49	45.64	63.15	49.09	44.21	27.57	52.85	42.09	31.13	81.9	35.4
Merged-chr17-13007817-3	chr17	13007697	13007897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-42.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	160.71	173.55	185.97	203.51	221.32	265.91	189.34	211.32	270.25	275.66	336.66	130.63
Merged-chr6-3399534-3	chr6	3399427	3399627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	44.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	69.86	75.96	58.76	54.7	75.28	66.79	53.81	39.31	63.73	53.22	42.21	24.12
Merged-chr8-35625882-3	chr8	35625791	35625991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36871.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	40.38	32.45	36.51	26.95	27.82	34.18	24.91	40.15	56.65	32.64	64.82	23.49
Merged-chr2-61579567-3	chr2	61579469	61579669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	983.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	47.24	45.53	63.89	40.62	54.82	67.73	36.21	57.79	90.67	61.76	77.38	40.1
Merged-chr6-129350135-3	chr6	129350027	129350227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-117.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	102.56	80.24	115.8	111.81	112.5	118.22	117.59	116.69	114.08	99.92	88.94	63.28
Merged-chr17-47760211-3	chr17	47760108	47760308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22277.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	39.57	29.18	66.17	45.45	45.0	33.87	57.13	83.97	53.5	39.16	65.32	48.56
Merged-chr7-29518650-3	chr7	29518538	29518738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13178.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	170.0	177.33	161.44	215.58	226.23	234.87	203.62	241.15	179.58	183.27	314.55	139.72
Merged-chr1-155098145-3	chr1	155098035	155098235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	1501.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	83.18	108.16	91.27	68.37	87.55	116.34	67.1	61.68	137.68	137.07	153.76	73.62
Merged-chr14-8214080-3	chr14	8214000	8214200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	19.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	172.02	184.37	215.63	153.24	207.42	226.71	146.49	211.01	241.53	226.45	329.63	179.19
Merged-chr10-127289378-3	chr10	127289238	127289438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-320.0	NM_033072	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	80.76	69.92	75.3	65.56	87.55	91.25	57.47	85.51	75.92	83.85	73.36	52.32
Merged-chr3-79173528-3	chr3	79173432	79173632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27657.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	271.35	293.53	280.66	222.42	261.42	343.68	246.14	212.27	272.22	277.66	303.5	159.77
Merged-chr3-105721990-3	chr3	105721909	105722109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	75.51	71.43	97.55	93.31	75.68	106.3	76.73	117.93	92.25	99.42	153.26	86.77
Merged-chr10-81408987-3	chr10	81408881	81409081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-594.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	64.2	36.72	62.75	45.05	82.64	101.91	56.14	86.44	94.21	94.4	123.61	58.27
Merged-chr13-85189390-3	chr13	85189282	85189482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347588)	promoter-TSS (NM_001347588)	-3.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	160.71	192.92	139.76	131.12	147.28	235.49	128.88	132.79	239.96	288.71	235.16	114.34
Merged-chr2-30416089-3	chr2	30415981	30416181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	31.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	29.48	27.17	33.09	20.91	30.68	43.59	9.63	20.33	39.93	38.16	33.16	30.39
Merged-chr7-122260288-3	chr7	122260174	122260374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-28851.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	83.99	69.42	77.58	62.34	50.73	66.48	39.2	55.37	59.79	34.14	52.26	30.07
Merged-chr3-75557463-3	chr3	75557360	75557560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-33.0	NM_009250	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	60.17	54.58	64.46	57.92	82.23	87.49	63.78	94.49	128.83	107.95	166.82	73.62
Merged-chr15-59041223-3	chr15	59041109	59041309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40817.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	32.3	15.34	21.11	24.53	33.14	34.81	14.28	29.33	40.52	29.62	43.72	18.17
Merged-chr7-16738358-3	chr7	16738257	16738457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198613)	promoter-TSS (NM_198613)	-87.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	95.7	67.66	99.83	133.93	112.5	129.51	122.57	152.58	130.21	130.05	182.9	88.65
Merged-chr8-116581465-3	chr8	116581375	116581575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	76460.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	45.23	57.85	67.88	78.03	76.5	76.83	71.75	65.38	113.29	95.4	124.11	55.13
Merged-chr18-82762834-3	chr18	82762763	82762963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3824.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	27.86	20.37	37.65	26.95	25.36	16.62	34.88	43.57	43.47	40.67	42.71	39.16
Merged-chr5-137628917-3	chr5	137628809	137629009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-214.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	254.8	249.26	287.51	231.26	256.1	294.44	204.62	212.58	357.97	365.53	381.89	223.05
Merged-chr11-26600833-3	chr11	26600739	26600939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6919.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	25.04	22.13	33.09	35.8	28.23	19.13	27.24	32.27	50.35	27.62	51.76	31.33
Merged-chr13-42367810-3	chr13	42367704	42367904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66328.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	54.51	66.65	75.3	107.79	58.91	72.44	56.8	73.4	70.02	61.76	90.95	38.85
Merged-chr7-113612791-3	chr7	113612667	113612867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-47780.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	54.92	42.26	77.58	68.78	46.64	67.42	71.08	96.08	86.15	78.83	94.47	51.06
Merged-chr15-76327431-3	chr15	76327348	76327548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175399)	promoter-TSS (NM_175399)	51.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	89.64	68.92	59.33	64.35	68.32	89.68	56.47	65.8	83.79	74.81	97.98	58.58
Merged-chr8-69184285-3	chr8	69184184	69184384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24762.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	27.46	24.15	50.77	55.91	42.96	40.14	40.52	78.79	50.16	37.66	84.92	36.65
Merged-chr16-91740394-1	chr16	91740294	91740494	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11023.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.65	3.27	6.28	15.69	9.82	4.39	3.99	12.76	3.15	4.52	4.52	6.58
Merged-chr11-103115417-3	chr11	103115311	103115511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-914.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	28.27	19.12	26.24	21.32	36.82	41.08	17.61	26.16	27.93	25.11	20.6	26.0
Merged-chr12-55481106-2	chr12	55481015	55481215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11532.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	22.61	19.87	3.99	4.83	5.32	12.23	3.65	1.54	2.95	6.53	2.51	0.0
Merged-chr5-115542894-3	chr5	115542803	115543003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-16564.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	28.67	20.63	21.11	21.32	27.41	17.25	20.93	28.01	35.01	33.14	27.13	16.29
Merged-chr1-152888017-3	chr1	152887932	152888132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	14613.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	49.67	23.39	43.93	46.66	31.91	26.97	21.59	17.89	50.35	56.24	31.66	35.4
Merged-chr10-111010002-3	chr10	111009930	111010130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-21.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	58.15	48.04	64.46	39.42	87.55	75.26	50.49	76.71	87.53	85.36	116.07	77.69
Merged-chr11-21046428-3	chr11	21046335	21046535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44889.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	98.53	109.67	76.44	60.33	67.91	92.82	53.81	77.47	95.0	126.03	83.91	41.66
Merged-chr5-122702406-3	chr5	122702300	122702500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5144.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	67.43	44.77	73.02	85.27	78.55	75.88	80.05	84.9	74.35	91.38	91.95	72.99
Merged-chr2-159646808-3	chr2	159646701	159646901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-300540.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	29.48	28.42	57.62	50.68	33.55	30.73	22.26	61.51	44.25	32.64	59.8	25.69
Merged-chr11-117986823-3	chr11	117986724	117986924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133757)	promoter-TSS (NM_133757)	-33.0	NM_133757	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	15.34	23.9	13.69	14.88	17.59	31.04	7.64	17.89	40.52	36.65	30.65	25.06
Merged-chr11-83291669-3	chr11	83291585	83291785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-14.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	62.59	59.86	88.99	69.98	119.46	126.06	83.04	85.23	101.88	97.91	146.72	66.73
Merged-chr4-101356791-3	chr4	101356670	101356870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-522.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	24.63	23.64	21.11	22.52	21.27	25.09	21.26	22.09	46.22	25.61	30.65	30.07
Merged-chr5-21645807-3	chr5	21645680	21645880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177076)	promoter-TSS (NM_177076)	-175.0	NM_177076	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	101.76	94.57	88.99	103.77	118.64	158.98	124.9	98.19	108.77	121.01	172.85	93.98
Merged-chr16-90279224-3	chr16	90279130	90279330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	5256.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	31.09	27.42	37.65	22.12	32.32	41.39	22.92	41.16	24.39	23.1	47.23	26.63
Merged-chr12-8313368-3	chr12	8313234	8313434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-99.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	39.98	36.22	31.95	31.77	45.0	66.48	38.2	41.72	56.25	66.78	71.35	31.01
Merged-chr6-83349451-3	chr6	83349346	83349546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175277)	promoter-TSS (NM_175277)	-38.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	27.46	33.45	44.5	27.35	38.46	47.66	31.22	26.07	51.14	34.14	62.81	31.33
Merged-chr5-135744273-3	chr5	135744171	135744371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172541)	promoter-TSS (NM_172541)	-99.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	71.88	54.58	87.28	67.17	83.05	68.99	63.44	84.67	110.93	93.39	89.94	52.32
Merged-chr13-110568708-3	chr13	110568635	110568835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173691.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	112.66	107.15	129.49	126.29	95.73	130.13	83.37	120.65	163.05	151.13	176.37	86.77
Merged-chr8-70673681-3	chr8	70673566	70673766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015816, intron 1 of 4)	CpG	435.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	60.57	39.49	65.03	39.42	58.09	79.96	27.24	51.2	78.68	76.32	76.38	46.68
Merged-chr1-53823911-3	chr1	53823790	53823990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-25534.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	128.41	96.34	158.02	115.03	127.64	137.97	122.24	132.67	111.92	123.02	137.18	65.16
Merged-chr9-123869500-3	chr9	123869389	123869589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7460.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	56.13	52.57	52.48	48.67	58.91	84.66	49.83	36.76	86.15	69.29	73.86	30.7
Merged-chr8-88666567-3	chr8	88666467	88666667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19220.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	55.32	49.8	61.04	63.95	74.46	67.42	58.79	63.11	80.25	56.74	103.01	44.48
Merged-chr8-61487877-3	chr8	61487772	61487972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145595, exon 1 of 5)	exon (NM_145595, exon 1 of 5)	138.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	19.79	22.39	39.36	31.77	31.91	34.81	38.86	28.29	27.34	40.67	26.63	31.64
Merged-chr7-120635177-3	chr7	120635039	120635239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-50.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	29.48	39.49	33.09	56.71	57.68	62.09	35.54	53.69	63.14	50.21	91.95	37.59
Merged-chr6-83660570-1	chr6	83660470	83660670	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4454.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.83	4.53	10.27	4.42	8.18	5.64	23.92	22.93	1.18	0.0	0.0	0.31
Merged-chrX-106633719-1	chrX	106633619	106633819	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	intron (NM_001033541, intron 1 of 3)	-30040.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	3.23	6.04	5.13	5.23	3.27	2.2	11.96	10.88	6.1	8.03	6.53	7.83
Merged-chr2-11300562-3	chr2	11300470	11300670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008859, exon 18 of 18)	3' UTR (NM_008859, exon 18 of 18)	-38919.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	28.27	25.4	30.23	55.5	44.59	41.39	41.52	49.37	36.19	39.67	48.24	29.13
Merged-chr3-138528019-3	chr3	138527910	138528110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007917, intron 2 of 7)	CpG	742.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	24.63	21.38	26.81	14.08	16.36	28.54	21.26	28.35	50.16	47.2	44.72	21.62
Merged-chr7-127014556-3	chr7	127014429	127014629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080638)	promoter-TSS (NM_080638)	65.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	27.05	24.15	39.36	21.32	27.41	32.61	22.92	20.38	31.27	33.64	23.11	20.68
Merged-chr2-156196754-3	chr2	156196686	156196886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172674, exon 1 of 18)	5' UTR (NM_172674, exon 1 of 18)	139.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	120.33	134.57	116.37	117.04	170.19	199.43	109.62	120.67	140.04	185.28	166.82	126.87
Merged-chr10-8777723-3	chr10	8777649	8777849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	108321.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	36.34	36.47	75.3	62.34	50.32	59.58	55.14	58.37	46.62	40.17	58.29	40.1
Merged-chr4-129829986-3	chr4	129829874	129830074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9266.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	50.47	68.67	67.31	57.92	51.96	88.74	50.82	49.51	59.99	37.66	40.7	39.78
Merged-chr11-114727386-3	chr11	114727326	114727526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034878)	promoter-TSS (NM_001034878)	14.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	23.42	25.91	23.96	22.52	29.05	43.59	11.29	20.33	30.09	29.62	39.7	17.54
Merged-chr14-7994228-3	chr14	7994127	7994327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007870)	promoter-TSS (NM_007870)	-45.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	14.54	22.13	21.68	10.46	14.32	19.44	24.25	14.33	22.42	21.09	25.63	23.81
Merged-chr5-99336619-3	chr5	99336506	99336706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83679.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	141.73	158.97	179.69	153.64	176.73	210.09	153.8	202.46	201.8	184.27	237.17	125.31
Merged-chr2-128698853-3	chr2	128698754	128698954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-61.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	47.24	29.43	55.33	58.72	70.37	52.05	62.78	89.3	60.58	65.27	83.41	36.34
Merged-chr5-139379183-3	chr5	139379077	139379277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	-1462.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	19.38	22.64	13.69	17.29	27.0	24.15	17.94	34.93	24.19	17.57	21.61	16.29
Merged-chr2-49411864-3	chr2	49411759	49411959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39627.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	20.59	28.17	17.68	32.58	29.86	31.67	25.58	26.47	33.04	34.65	43.72	11.9
Merged-chr3-27202943-3	chr3	27202862	27203062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19958.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	42.8	30.69	54.19	40.62	57.68	43.27	36.54	65.41	75.72	49.21	84.42	48.56
Merged-chr10-77969871-3	chr10	77969779	77969979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-7.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	74.7	55.59	82.15	42.23	45.41	57.07	51.15	86.69	89.49	54.23	112.56	59.52
Merged-chr1-36572381-1	chr1	36572281	36572481	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14000.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	1.21	1.01	3.99	4.02	10.64	5.96	9.3	9.64	11.8	11.55	10.55	9.08
Merged-chr3-126625699-3	chr3	126625595	126625795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28744.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	49.26	32.45	31.38	44.24	49.09	49.23	45.51	59.78	69.23	51.21	101.5	36.97
Merged-chr16-44726048-3	chr16	44725929	44726129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	1728.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	18.57	27.92	42.21	38.21	41.73	45.47	24.91	41.5	64.32	50.71	35.17	28.19
Merged-chr14-79481647-3	chr14	79481546	79481746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-378.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	102.56	76.97	63.32	90.9	99.0	105.67	83.71	82.51	114.47	115.48	149.74	77.38
Merged-chr14-87190873-3	chr14	87190789	87190989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49665.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	15.75	26.16	28.52	22.12	31.5	18.81	26.24	41.41	71.59	61.26	93.46	37.91
Merged-chr9-121675145-1	chr9	121675045	121675245	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29884.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	1.14	4.02	0.82	0.63	0.66	3.14	42.68	44.19	56.28	44.48
Merged-chr3-87930229-3	chr3	87930124	87930324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	-29.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	78.74	91.81	63.89	74.81	83.46	98.15	56.14	64.99	105.82	115.99	100.5	52.63
Merged-chr12-72760475-3	chr12	72760376	72760576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-735.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	20.59	16.35	19.4	22.12	22.5	38.57	28.23	26.24	22.03	36.65	53.26	23.49
Merged-chr8-3221169-3	chr8	3221077	3221277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330056, intron 2 of 21)	CpG	58440.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	57.74	48.04	50.77	63.15	53.18	36.06	61.12	60.79	75.92	63.77	88.94	43.23
Merged-chr2-164497471-3	chr2	164497394	164497594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	-31.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	35.13	21.63	17.68	16.89	27.41	37.0	14.62	24.79	26.95	33.14	46.73	19.11
Merged-chr2-61594138-2	chr2	61594047	61594247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_149323, exon 2 of 10)	non-coding (NR_149323, exon 2 of 10)	1050.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	20.19	14.59	19.97	14.88	13.5	11.92	10.63	10.63	24.59	24.1	30.15	20.68
Merged-chr3-54692713-3	chr3	54692610	54692810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019995)	promoter-TSS (NM_019995)	-105.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	141.33	109.67	138.05	140.77	165.69	163.69	125.23	189.31	184.49	170.21	239.18	87.4
Merged-chr15-97786830-3	chr15	97786733	97786933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	2468.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	51.28	64.14	35.37	28.56	74.05	79.96	72.08	35.44	87.13	96.91	51.76	30.39
Merged-chr2-172401285-3	chr2	172401175	172401375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	7481.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	212.4	203.49	280.66	231.26	259.37	264.66	186.02	236.38	280.48	250.55	329.63	177.94
Merged-chrX-109191134-3	chrX	109191038	109191238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5618.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	41.19	44.52	63.32	58.32	44.18	69.93	43.85	71.86	55.86	42.18	81.4	36.03
Merged-chr9-61022006-3	chr9	61021902	61022102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	4933.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	38.36	28.93	32.52	28.96	34.36	47.35	20.59	39.76	31.08	33.14	39.19	25.06
Merged-chr2-59346717-3	chr2	59346619	59346819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	39963.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	92.47	74.45	90.7	117.84	82.23	79.33	90.02	127.57	76.71	56.24	111.55	72.36
Merged-chr18-64921030-3	chr18	64920922	64921122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	33266.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	33.52	24.4	15.97	33.38	45.0	25.09	17.27	37.21	48.39	31.63	46.23	20.99
Merged-chr3-135439366-3	chr3	135439271	135439471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	245.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	130.83	142.87	164.29	142.78	151.37	168.7	144.49	181.65	212.42	166.7	307.02	142.22
Merged-chr7-28312105-3	chr7	28312026	28312226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-80.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	98.53	65.4	101.54	88.08	110.87	124.8	69.09	86.1	102.67	118.5	139.69	53.88
Merged-chr11-87122077-3	chr11	87121982	87122182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4993.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	25.44	29.43	29.66	22.52	25.36	44.84	19.6	36.53	39.73	37.16	37.18	26.63
Merged-chr2-26550023-3	chr2	26549923	26550123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31033.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	39.57	33.2	36.51	41.43	56.87	60.21	34.55	45.95	30.29	39.67	51.76	24.43
Merged-chr15-75748424-3	chr15	75748320	75748520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-498.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	86.01	69.42	69.6	44.64	69.14	108.5	72.75	77.33	90.67	107.95	102.51	73.3
Merged-chr15-78815906-3	chr15	78815803	78816003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12861.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	29.88	34.96	31.38	21.72	38.86	38.88	19.93	30.25	42.29	33.64	25.12	18.17
Merged-chr8-31149879-3	chr8	31149787	31149987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-429.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	86.41	56.09	83.86	83.66	65.87	84.66	61.12	90.87	92.44	79.83	110.55	57.33
Merged-chr15-8634981-3	chr15	8634879	8635079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75828.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	31.5	21.88	34.23	32.58	26.18	29.16	8.97	34.82	44.06	41.17	59.8	38.85
Merged-chr2-154613454-3	chr2	154613339	154613539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	71.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	54.11	51.81	45.07	21.32	57.27	82.78	36.54	48.45	76.91	92.89	127.63	50.75
Merged-chrX-13655241-3	chrX	13655139	13655339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 5 of 26)	intron (NM_001284503, intron 5 of 26)	-6124.0	NM_175669	319200.0	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	43.61	27.42	61.04	44.24	34.77	68.99	40.19	50.36	42.48	27.62	28.64	30.07
Merged-chr7-27861109-3	chr7	27861003	27861203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024726, intron 1 of 4)	intron (NM_001024726, intron 1 of 4)	518.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	23.02	29.93	15.97	8.85	20.46	44.53	12.62	7.01	25.57	31.63	24.12	5.01
Merged-chr7-44304980-1	chr7	44304880	44305080	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009131, exon 4 of 4)	exon (NM_009131, exon 4 of 4)	1979.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	111.85	102.87	103.82	93.31	99.41	115.08	98.65	93.42	138.08	170.21	195.97	112.15
Merged-chr19-24997368-3	chr19	24997288	24997488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2141.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	54.11	34.71	40.5	41.83	21.68	22.58	17.61	34.15	28.91	34.65	22.11	18.8
Merged-chr19-26697291-3	chr19	26697187	26697387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 22 of 32)	intron (NM_011416, intron 22 of 32)	-50878.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	61.78	49.05	68.45	80.04	92.05	87.8	74.41	113.5	70.22	68.29	125.12	48.56
Merged-chr17-71127644-3	chr17	71127542	71127742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010867)	TTS (NM_010867)	-55890.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	54.11	58.86	89.56	96.93	81.41	83.1	78.06	111.39	73.36	73.31	153.76	64.22
Merged-chr7-19119787-3	chr7	19119681	19119881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-78.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	116.29	121.74	114.66	109.4	121.5	150.51	76.07	105.22	140.83	121.01	157.78	72.68
Merged-chr2-128393674-3	chr2	128393569	128393769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	35682.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	28.67	19.37	37.65	40.22	47.05	45.47	31.22	44.55	45.43	43.18	55.27	22.24
Merged-chr2-164815549-3	chr2	164815455	164815655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	-7131.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	25.04	17.61	23.39	19.31	30.27	20.7	19.93	27.39	36.19	30.13	44.22	34.77
Merged-chr1-134065450-3	chr1	134065360	134065560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13695.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	205.94	155.19	261.84	213.97	264.28	292.25	295.96	279.23	240.94	280.68	368.82	183.26
Merged-chr11-46063257-3	chr11	46063150	46063350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	7266.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	25.84	29.68	28.52	36.6	35.18	41.39	15.28	38.07	44.45	35.15	88.44	32.58
Merged-chr7-84551294-1	chr7	84551194	84551394	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22340.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	5.65	4.78	0.0	4.83	10.23	5.02	3.65	16.63	24.78	19.08	17.08	15.35
Merged-chr8-69919201-3	chr8	69919105	69919305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-16647.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	31.09	24.9	31.95	25.34	38.46	33.87	18.27	26.24	30.88	21.59	34.67	15.35
Merged-chr4-128839932-3	chr4	128839826	128840026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33814.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	39.57	37.23	52.48	46.25	53.18	63.97	38.86	59.72	78.09	78.83	76.88	43.23
Merged-chr9-89267285-3	chr9	89267164	89267364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55880.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	48.46	32.2	54.19	57.92	89.59	99.09	97.33	79.4	54.48	44.69	57.28	42.29
Merged-chr12-84218903-3	chr12	84218805	84219005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-24.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	27.86	29.93	19.97	21.72	22.91	37.0	22.26	25.04	35.01	32.13	44.22	25.69
Merged-chr2-131352904-3	chr2	131352803	131353003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-11.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	61.78	60.37	55.9	49.07	56.87	83.72	52.82	65.55	80.64	71.8	73.86	45.42
Merged-chr16-91001313-3	chr16	91001213	91001413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	9782.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	92.47	70.93	76.44	45.05	81.0	90.31	68.76	62.08	100.51	98.91	106.53	47.93
Merged-chr12-98746905-3	chr12	98746821	98747021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-47.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	83.18	90.3	69.6	79.23	88.37	97.83	50.82	76.21	121.95	136.07	140.7	56.39
Merged-chr11-34066829-3	chr11	34066716	34066916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	ORR1F|LTR|ERVL-MaLR	19888.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	21.0	12.83	24.53	16.49	15.96	13.17	15.61	26.05	16.52	16.57	19.09	18.48
Merged-chr11-83604824-3	chr11	83604720	83604920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-11733.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	30.69	26.41	32.52	16.89	50.32	74.63	46.84	52.65	63.92	60.75	79.39	33.83
Merged-chr15-96461029-3	chr15	96460942	96461142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-199.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	205.94	203.99	176.84	176.57	180.01	267.16	162.1	195.62	264.94	300.26	323.6	177.94
Merged-chr15-102203214-1	chr15	102203114	102203314	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-431.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	22.21	17.86	10.84	27.35	28.64	26.34	23.25	35.58	27.93	22.59	26.63	18.48
Merged-chr11-3185106-3	chr11	3185001	3185201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	8362.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	58.15	59.11	41.64	34.59	109.64	123.23	64.44	73.32	192.36	181.26	229.13	87.71
Merged-chr8-13160898-3	chr8	13160790	13160990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	1729.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	44.42	24.4	41.07	45.85	36.0	40.45	24.25	43.07	46.81	65.78	82.91	41.35
Merged-chr15-73162135-3	chr15	73162042	73162242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	22805.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	31.09	25.4	30.8	29.36	40.09	40.14	35.87	23.97	45.24	33.64	58.79	28.82
Merged-chr6-143307552-3	chr6	143307451	143307651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61663.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	25.44	20.12	70.17	47.06	38.86	34.81	35.54	60.95	46.42	25.11	76.38	31.33
Merged-chr11-84179577-3	chr11	84179460	84179660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12084.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	210.38	228.39	215.63	202.71	272.46	278.77	201.63	217.57	270.45	261.09	330.13	153.5
Merged-chr5-36560395-1	chr5	36560295	36560495	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	22002.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.88	5.02	17.59	13.47
Merged-chr11-109362730-3	chr11	109362663	109362863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-31.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	73.49	76.72	77.01	60.33	68.32	89.37	62.45	62.61	147.12	136.57	133.16	96.8
Merged-chr1-60098297-3	chr1	60098204	60098404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199061)	promoter-TSS (NM_001199061)	57.0	NM_001285463	241066.0	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	63.4	52.07	58.76	49.07	50.73	71.18	43.51	39.87	56.65	62.26	67.84	52.32
Merged-chr18-76944219-3	chr18	76944127	76944327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039201)	promoter-TSS (NM_001039201)	112.0	NM_001039202	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	66.63	106.9	99.83	120.66	88.78	109.12	137.85	83.92	75.92	108.45	112.56	76.12
Merged-chr4-32239125-1	chr4	32239025	32239225	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-178310.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	13.33	10.06	9.13	16.89	12.27	11.6	23.25	16.96	13.37	17.57	21.1	16.6
Merged-chr4-48043418-3	chr4	48043253	48043453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1952.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	273.77	226.88	269.26	269.88	315.83	307.3	286.66	297.42	351.28	364.53	474.85	247.79
Merged-chr7-143649648-3	chr7	143649547	143649747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023680)	promoter-TSS (NM_023680)	17.0	NM_001311145	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	27.46	21.88	22.25	41.02	34.77	46.72	20.59	27.98	52.32	29.12	61.3	16.6
Merged-chr6-83273943-3	chr6	83273839	83274039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166067, intron 13 of 24)	intron (NM_001166067, intron 13 of 24)	36564.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	39.17	25.66	52.48	31.77	28.23	49.23	38.53	54.73	62.94	39.16	54.27	37.59
Merged-chr1-85703823-3	chr1	85703726	85703926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013673, intron 17 of 19)	intron (NM_013673, intron 17 of 19)	32780.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	133.25	132.56	158.02	154.44	162.0	199.75	105.3	138.11	176.43	183.77	222.6	125.93
Merged-chr9-119248144-3	chr9	119248024	119248224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-16432.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	30.28	13.58	25.67	30.57	30.27	17.25	22.92	35.64	23.6	15.06	38.19	16.29
Merged-chr14-57826187-3	chr14	57826073	57826273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198605)	promoter-TSS (NM_198605)	-10.0	NM_198605	219114.0	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	53.7	62.13	59.33	57.92	55.64	57.07	37.87	70.57	82.81	66.78	102.0	58.89
Merged-chr10-120882518-3	chr10	120882435	120882635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16436.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	30.69	23.14	17.68	20.51	30.27	43.59	25.58	53.19	23.21	20.08	28.64	24.75
Merged-chr14-119007596-3	chr14	119007511	119007711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69679.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	218.86	178.84	203.08	226.44	279.01	268.73	187.34	319.77	273.4	238.5	436.66	175.43
Merged-chr1-106375201-3	chr1	106375099	106375299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171432.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	34.32	14.84	57.05	32.98	45.41	37.0	37.54	50.38	67.27	54.23	66.33	33.83
Merged-chr12-27312358-1	chr12	27312258	27312458	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30360.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.0	1.51	5.13	2.41	12.27	12.54	4.65	15.87	1.97	0.5	0.0	0.0
Merged-chr16-43380106-3	chr16	43380008	43380208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	40088.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	26.65	22.89	32.52	33.78	32.73	31.67	30.89	43.88	34.03	19.58	36.18	28.51
Merged-chr17-6779081-3	chr17	6778983	6779183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	3697.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	47.65	33.45	35.94	27.35	28.23	48.6	24.25	41.58	30.49	30.13	35.17	24.75
Merged-chr3-89774619-3	chr3	89774527	89774727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1018.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	25.04	24.65	39.36	19.71	32.32	51.11	27.57	35.22	49.17	41.17	47.23	21.3
Merged-chr2-73911343-3	chr2	73911241	73911441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175015)	promoter-TSS (NM_175015)	-15.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	46.44	50.31	26.24	35.8	57.68	64.6	29.9	48.67	82.41	72.81	73.86	51.38
Merged-chr2-44274728-3	chr2	44274640	44274840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-209416.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	69.05	42.26	62.75	92.91	81.82	63.03	102.97	108.36	99.92	67.78	132.15	48.56
Merged-chr1-51934729-3	chr1	51934617	51934817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18739.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	125.98	130.04	114.66	189.03	124.78	132.64	126.89	140.16	142.01	113.48	146.72	81.76
Merged-chr13-35741294-3	chr13	35741200	35741400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-102.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	90.85	99.86	92.98	88.48	90.41	103.48	62.78	84.76	133.16	108.45	145.72	71.11
Merged-chr17-71165181-3	chr17	71165073	71165273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18359.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	197.05	217.07	224.76	227.65	199.23	259.01	178.71	187.91	261.6	262.6	256.77	153.81
Merged-chr11-34010970-3	chr11	34010880	34011080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17787.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	152.63	191.41	185.97	102.56	173.05	216.37	132.87	121.51	205.93	195.32	232.65	112.15
Merged-chr19-5041335-3	chr19	5041233	5041433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134155)	promoter-TSS (NM_134155)	-21.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	64.61	58.61	39.93	23.73	46.64	53.31	36.21	30.98	63.14	47.7	56.28	22.56
Merged-chr19-5875304-3	chr19	5875193	5875393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026169)	promoter-TSS (NM_026169)	-85.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	33.52	29.18	43.93	34.19	44.59	46.72	24.25	33.64	66.68	52.72	52.26	28.19
Merged-chr9-48561073-2	chr9	48560966	48561166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44057.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	8.48	15.59	37.65	5.63	22.09	29.79	16.28	15.25	0.0	0.0	0.0	0.63
Merged-chr16-78376891-3	chr16	78376791	78376991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009770)	promoter-TSS (NM_009770)	-81.0	NM_009770	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	135.68	113.44	105.53	119.45	188.19	205.7	177.05	195.62	221.08	190.8	287.92	127.19
Merged-chr4-3647233-3	chr4	3647136	3647336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9270.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	48.46	45.78	55.9	59.53	68.32	63.97	53.81	66.76	55.47	57.24	82.91	45.74
Merged-chr5-53998726-1	chr5	53998626	53998826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001081103, exon 1 of 12)	5' UTR (NM_001081103, exon 1 of 12)	203.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	38.36	33.2	42.78	45.05	37.23	35.75	37.87	39.53	54.09	63.27	65.32	31.01
Merged-chr4-55386964-3	chr4	55386843	55387043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 9 of 9)	RMER10B|LTR|ERVL	31899.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	23.02	21.38	41.07	51.48	38.86	36.37	53.15	75.31	40.12	35.15	52.76	27.25
Merged-chr2-180726886-3	chr2	180726844	180727044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	1605.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	16.56	27.92	25.1	32.18	20.86	31.98	33.55	30.62	34.03	30.13	43.21	28.82
Merged-chr12-81971996-3	chr12	81971897	81972097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018814, intron 20 of 35)	intron (NM_018814, intron 20 of 35)	111967.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	43.21	51.06	65.03	54.3	83.46	69.61	59.46	95.38	67.46	68.79	81.9	48.24
Merged-chr7-28209150-3	chr7	28209051	28209251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	28835.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	49.26	41.25	41.07	34.19	47.05	44.84	25.91	42.0	30.68	44.69	49.24	39.16
Merged-chr19-37174403-2	chr19	37174291	37174491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	548.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	11.31	7.04	6.28	3.22	6.95	3.76	3.65	9.08	3.54	4.52	9.55	4.39
Merged-chr2-38486123-3	chr2	38486015	38486215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25582.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	24.63	20.63	33.09	27.35	28.64	34.81	17.61	31.01	35.21	41.67	31.15	26.63
Merged-chr13-107022522-3	chr13	107022419	107022619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	-51.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	51.28	38.99	39.36	47.46	76.09	63.66	39.53	49.04	93.03	86.36	116.07	31.64
Merged-chr14-17660909-3	chr14	17660813	17661013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-47.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	116.29	98.1	140.33	143.59	95.32	90.94	104.63	150.67	93.03	90.38	153.26	74.87
Merged-chr16-93818938-3	chr16	93818837	93819037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-13184.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	20.19	15.09	25.67	22.52	30.27	23.2	30.56	38.61	42.48	55.23	50.75	54.82
Merged-chr3-152395948-3	chr3	152395871	152396071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-32.0	NM_001080755	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	66.22	64.39	91.27	85.67	87.96	107.56	72.41	101.41	96.97	85.86	133.16	59.21
Merged-chr17-51221294-3	chr17	51221218	51221418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41966.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	39.17	44.27	51.91	40.62	31.09	59.89	26.57	49.21	54.09	71.8	64.32	33.83
Merged-chr2-90577809-3	chr2	90577795	90577995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2752.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	31.9	28.67	30.23	33.38	40.5	57.38	54.81	43.74	47.8	44.69	53.77	29.13
Merged-chr9-107771099-3	chr9	107770997	107771197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148930)	promoter-TSS (NM_148930)	-95.0	NM_001359525	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	79.14	70.93	86.71	74.41	123.96	128.88	83.71	101.52	118.41	90.88	140.7	62.97
Merged-chr4-117254106-3	chr4	117254027	117254227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1787.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	27.05	14.34	29.66	36.2	24.14	31.98	36.21	33.45	24.19	24.6	32.66	16.6
Merged-chrX-53269861-3	chrX	53269764	53269964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166365)	promoter-TSS (NM_001166365)	-59.0	NM_001166583	78755.0	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	27.46	43.77	60.47	55.91	46.23	51.43	37.2	55.21	64.71	44.69	62.81	23.18
Merged-chr18-61108682-3	chr18	61108578	61108778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	3106.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	170.4	120.73	164.29	143.99	141.55	167.45	147.48	179.66	187.05	208.37	238.18	103.69
Merged-chr3-69004951-3	chr3	69004834	69005034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026641)	promoter-TSS (NM_026641)	196.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	42.4	35.72	23.96	39.01	36.41	28.22	31.56	27.62	43.27	79.33	62.81	39.47
Merged-chr5-147861134-3	chr5	147861026	147861226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	498.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	28.67	17.61	29.09	20.11	18.41	13.48	14.62	18.08	27.73	15.57	38.69	20.36
Merged-chr1-176797453-1	chr1	176797353	176797553	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	9671.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	2.42	0.5	1.14	5.63	12.68	3.14	4.32	14.61	6.29	11.05	12.06	14.1
Merged-chr11-53775968-3	chr11	53775882	53776082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159396, exon 9 of 10)	exon (NM_001159396, exon 9 of 10)	5509.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	39.17	43.77	43.35	23.73	47.46	39.51	20.26	43.37	48.39	34.14	49.75	30.39
Merged-chr4-12424211-3	chr4	12424105	12424305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-252190.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	73.89	41.0	50.77	59.53	30.68	33.55	35.54	55.04	52.52	45.19	41.71	20.05
Merged-chr8-105455462-3	chr8	105455340	105455540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033371, intron 7 of 10)	intron (NM_001033371, intron 7 of 10)	15982.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	37.55	31.19	59.33	36.6	39.27	46.72	35.21	52.51	41.3	28.62	46.23	21.62
Merged-chr13-49652914-3	chr13	49652813	49653013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073167)	promoter-TSS (NR_073167)	-165.0	NM_001271397	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	222.9	183.87	201.37	200.3	210.28	248.04	152.8	181.71	319.81	269.63	328.12	175.74
Merged-chr9-64179324-3	chr9	64179213	64179413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183316)	promoter-TSS (NM_183316)	16.0	NM_183316	330959.0	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	48.86	57.6	30.23	43.04	48.27	65.22	27.9	37.71	74.94	66.78	51.76	39.78
Merged-chr2-181365423-3	chr2	181365323	181365523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	0.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	118.31	118.97	129.49	113.42	130.5	120.1	75.73	138.81	110.93	95.4	128.13	76.12
Merged-chr8-57512371-1	chr8	57512271	57512471	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008252, intron 1 of 4)	CpG	528.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	17.36	12.83	6.28	6.03	15.55	10.03	10.63	13.54	21.05	33.64	19.09	12.84
Merged-chr2-75705329-3	chr2	75705204	75705404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	-641.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	21.4	17.61	18.83	26.14	20.46	34.81	21.92	28.6	73.56	65.78	72.86	36.65
Merged-chr14-30951362-3	chr14	30951257	30951457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011849)	promoter-TSS (NM_011849)	-20.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	68.65	77.22	66.74	63.15	71.59	89.37	49.83	71.36	89.3	97.91	133.16	48.87
Merged-chr10-99182343-3	chr10	99182247	99182447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	74212.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	40.78	32.45	34.23	44.24	52.37	39.82	45.18	41.33	41.3	40.67	54.27	19.11
Merged-chr10-115362351-3	chr10	115362245	115362445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359470)	promoter-TSS (NM_001359470)	-78.0	NM_001359471	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	200.69	178.33	189.96	204.72	248.73	179.05	233.85	274.32	190.0	215.4	314.05	150.99
Merged-chr15-78947840-3	chr15	78947718	78947918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138579)	promoter-TSS (NM_138579)	94.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	82.37	69.17	57.05	47.06	90.41	100.34	70.09	84.81	80.64	82.85	82.91	53.57
Merged-chr17-8147845-3	chr17	8147722	8147922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083938)	promoter-TSS (NM_001083938)	10.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	70.26	84.01	75.3	59.53	71.59	90.31	59.79	42.28	33.44	38.16	46.23	26.31
Merged-chr1-189799152-3	chr1	189799048	189799248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	70880.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	39.57	22.64	27.95	39.42	30.27	37.94	23.92	62.83	64.12	51.72	66.33	41.04
Merged-chr15-80711142-3	chr15	80711041	80711241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-172.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	121.54	95.83	124.36	96.93	155.05	160.24	87.36	109.29	151.25	168.21	149.74	74.56
Merged-chr2-60284781-3	chr2	60284672	60284872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-288.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	26.65	22.13	31.95	19.31	28.64	21.64	17.27	19.71	44.25	29.62	36.18	20.68
Merged-chr3-95111101-3	chr3	95110998	95111198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009336)	promoter-TSS (NM_009336)	56.0	NM_009336	21427.0	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	28.67	24.65	18.25	24.53	40.91	38.88	29.9	22.43	27.73	34.65	21.1	21.62
Merged-chr11-83020250-1	chr11	83020150	83020350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181545, intron 1 of 5)	intron (NM_181545, intron 1 of 5)	472.0	NM_001167743	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	22.21	28.93	23.96	25.74	4.09	4.08	10.63	4.12	6.29	10.04	9.55	2.82
Merged-chr1-152540709-3	chr1	152540621	152540821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	84496.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	90.05	75.21	96.41	95.32	69.96	126.37	58.79	87.93	100.31	102.43	67.33	59.52
Merged-chr2-173737501-3	chr2	173737418	173737618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-53.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	168.38	154.19	171.14	214.77	215.19	207.9	186.68	219.76	247.04	244.02	336.16	161.33
Merged-chr13-30974038-3	chr13	30973921	30974121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	26.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	79.55	55.59	67.88	72.4	58.91	67.73	58.79	70.29	50.16	60.75	88.44	46.68
Merged-chrUn_JH584304-56958-1	chrUn_JH584304	56858	57058	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 3 of 6)	intron (NR_003518, intron 3 of 6)	2731.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	59.79	63.27	58.79	39.16
Merged-chr7-100493322-3	chr7	100493208	100493408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-50.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	90.05	84.26	82.72	84.06	95.73	95.64	56.14	63.39	91.46	102.43	89.44	43.23
Merged-chr4-139490915-3	chr4	139490827	139491027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39621.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	14.94	13.83	31.95	19.31	13.91	25.71	14.62	16.43	8.06	6.53	19.6	17.54
Merged-chr12-112866682-3	chr12	112866571	112866771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5755.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	46.84	96.84	65.6	24.53	65.46	120.1	50.49	20.19	88.12	85.36	64.32	33.83
Merged-chrUn_JH584304-35293-1	chrUn_JH584304	35193	35393	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24396.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.51	22.09	24.62	20.68
Merged-chr1-156674366-3	chr1	156674282	156674482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-43.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	55.72	54.33	61.04	74.81	65.46	77.45	46.84	69.34	54.29	51.72	76.38	44.8
Merged-chr4-95215369-3	chr4	95215272	95215472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-163150.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	68.24	43.77	51.34	69.18	110.05	82.47	58.46	84.95	74.15	77.83	68.84	52.63
Merged-chr14-114948532-3	chr14	114948421	114948621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-2573.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	17.36	24.65	27.95	37.0	32.73	24.46	31.56	42.25	15.54	11.05	23.11	5.95
Merged-chr2-12419486-3	chr2	12419388	12419588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149732)	promoter-TSS (NR_149732)	-28.0	NR_149731	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	52.49	50.05	47.92	61.94	78.55	72.44	47.5	73.46	93.82	88.37	95.97	59.52
Merged-chr4-114986728-3	chr4	114986639	114986839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	CpG	489.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	29.07	27.17	18.83	28.96	15.55	35.12	46.5	32.83	37.17	42.68	50.25	35.09
Merged-chr7-35729834-3	chr7	35729733	35729933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	24621.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	90.05	66.65	59.33	94.92	86.73	79.96	77.06	111.48	35.99	39.67	54.77	39.78
Merged-chr15-80133136-3	chr15	80133044	80133244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-10.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	52.49	47.29	69.6	45.05	60.55	100.34	30.56	51.34	57.63	65.78	58.29	40.1
Merged-chr12-55361137-3	chr12	55361033	55361233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-23089.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	64.2	43.26	59.9	67.97	88.37	80.27	63.11	69.22	69.23	61.26	60.8	35.09
Merged-chr14-33245084-3	chr14	33244983	33245183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	28260.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	23.82	28.17	35.94	38.21	42.96	41.71	28.23	46.32	35.4	34.65	31.15	25.06
Merged-chr16-90885980-1	chr16	90885880	90886080	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	48869.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	1.62	3.27	6.85	5.63	1.64	3.76	11.29	9.22	5.9	5.02	10.55	5.95
Merged-chr16-30416563-3	chr16	30416471	30416671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28041.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	56.94	37.48	46.21	47.46	56.87	66.48	32.88	70.21	70.41	64.77	84.42	36.03
Merged-chr1-20064443-1	chr1	20064343	20064543	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 66 of 66)	intron (NM_153179, intron 66 of 66)	-292011.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.0	1.76	0.0	0.8	4.91	4.7	9.97	12.45	4.13	3.51	2.01	2.19
Merged-chr15-38653199-3	chr15	38653130	38653330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	11.71	8.3	12.55	14.88	11.45	13.48	13.29	12.06	16.13	24.1	17.59	14.72
Merged-chr4-34614905-3	chr4	34614816	34615016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015824)	promoter-TSS (NM_015824)	26.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	80.76	68.92	64.46	85.27	125.19	106.93	72.08	144.93	138.27	107.95	182.4	79.26
Merged-chr4-149662353-3	chr4	149662256	149662456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 3 of 23)	intron (NM_001029837, intron 3 of 23)	960.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	22.61	23.14	36.51	47.06	27.0	30.1	37.2	42.22	25.96	25.11	36.68	25.06
Merged-chr9-70542726-3	chr9	70542615	70542815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025690)	promoter-TSS (NM_025690)	0.0	NM_001357911	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	105.79	97.59	118.08	110.6	132.96	126.06	91.68	83.05	161.68	149.13	193.96	85.52
Merged-chr17-34197671-3	chr17	34197580	34197780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010724)	promoter-TSS (NM_010724)	-515.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	49.26	50.56	51.91	43.04	53.18	71.81	24.91	45.9	74.74	100.42	76.88	32.89
Merged-chr6-136831886-3	chr6	136831780	136831980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001039558, exon 2 of 2)	5' UTR (NM_001039558, exon 2 of 2)	3037.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	19.79	21.63	29.09	25.34	26.59	29.48	16.28	39.98	51.14	50.71	63.31	29.76
Merged-chr8-70797129-3	chr8	70797035	70797235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-1000.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	61.38	57.35	46.21	49.07	67.91	75.26	54.14	58.04	68.64	80.84	84.92	51.06
Merged-chr7-100863462-3	chr7	100863338	100863538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177073)	promoter-TSS (NM_177073)	-25.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	76.72	73.7	30.8	52.29	65.87	86.55	46.5	47.52	104.24	119.0	99.49	65.16
Merged-chr11-70595820-3	chr11	70595715	70595915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20079.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	51.28	47.54	58.76	41.83	58.09	44.21	22.26	34.99	74.35	69.79	53.26	38.85
Merged-chr3-15426522-1	chr3	15426422	15426622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001002898)	promoter-TSS (NM_001002898)	-95.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	2.83	4.02	6.85	10.86	13.91	12.86	23.25	24.45	7.47	1.51	4.52	3.13
Merged-chr3-51341285-3	chr3	51341196	51341396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-652.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	61.38	53.07	66.17	46.25	64.64	112.57	68.1	88.57	123.13	112.97	163.31	55.45
Merged-chr5-34169540-3	chr5	34169443	34169643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289804)	promoter-TSS (NM_001289804)	-17.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	149.4	154.94	165.43	168.12	151.78	215.74	120.91	154.77	170.92	182.26	253.25	123.74
Merged-chr16-90727432-3	chr16	90727335	90727535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025642)	promoter-TSS (NM_025642)	-64.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	117.5	115.2	116.37	92.91	151.78	124.17	78.39	112.15	165.41	151.64	184.91	109.64
Merged-chr11-119352276-3	chr11	119352184	119352384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018822, intron 2 of 7)	L1MB2|LINE|L1	3226.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	46.84	30.94	25.67	58.72	61.77	49.86	23.58	41.41	41.11	32.64	32.16	41.98
Merged-chr12-8974031-3	chr12	8973986	8974186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159527)	promoter-TSS (NM_001159527)	85.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	17.77	27.67	22.25	33.38	33.14	44.84	51.49	36.03	37.37	36.15	62.31	22.87
Merged-chr9-94512467-3	chr9	94512376	94512576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25605.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	60.97	55.59	43.93	60.73	41.73	59.89	35.87	59.75	93.23	88.37	87.93	31.01
Merged-chr3-86142720-3	chr3	86142625	86142825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016959)	promoter-TSS (NM_016959)	-57.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	167.17	164.0	202.51	168.52	175.51	215.42	133.2	173.78	210.65	235.99	259.28	149.74
Merged-chr16-11034572-3	chr16	11034458	11034658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	25660.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	61.78	63.39	79.29	87.68	95.32	74.94	60.46	79.93	63.53	84.35	90.45	44.8
Merged-chr11-82952799-3	chr11	82952698	82952898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183201, intron 1 of 5)	intron (NM_183201, intron 1 of 5)	696.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	48.05	51.31	54.19	54.7	63.82	53.31	47.17	52.88	58.42	47.7	46.73	49.18
Merged-chr6-146120369-3	chr6	146120275	146120475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	186253.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	49.26	44.52	55.9	57.11	72.82	88.11	85.37	97.18	96.18	62.26	95.97	61.71
Merged-chr10-125321660-3	chr10	125321570	125321770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	7293.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	21.8	22.89	43.93	41.02	49.5	37.0	52.82	52.09	43.66	38.16	75.37	33.21
Merged-chr16-32608936-3	chr16	32608846	32609046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	50.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	69.05	85.77	63.89	37.4	60.55	104.42	28.9	53.89	84.97	98.91	85.92	41.66
Merged-chr18-36739992-3	chr18	36739884	36740084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4603.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	58.95	42.76	41.07	45.45	53.59	64.91	38.53	53.33	66.09	67.78	65.32	47.93
Merged-chr13-104661347-1	chr13	104661247	104661447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_026072, exon 12 of 14)	exon (NM_026072, exon 12 of 14)	155606.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	24.23	19.12	26.24	26.55	0.82	0.63	0.0	1.23	1.18	3.01	1.0	0.94
Merged-chr9-77709142-3	chr9	77709020	77709220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45415.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	23.02	15.85	31.38	23.33	29.05	23.83	25.58	38.66	37.17	16.07	38.69	24.43
Merged-chr1-16104852-3	chr1	16104767	16104967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	-434.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	50.07	75.96	66.74	64.35	54.41	52.05	74.74	68.13	83.59	87.87	82.91	62.34
Merged-chr10-81359065-3	chr10	81358973	81359173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	1582.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	42.4	29.93	45.64	40.22	54.0	48.6	25.24	56.52	41.3	35.15	39.7	33.21
Merged-chr5-64410892-3	chr5	64410788	64410988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57054.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	30.69	23.39	19.97	46.25	38.05	24.77	25.24	39.14	18.88	26.11	30.15	20.68
Merged-chr9-31931899-3	chr9	31931797	31931997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18612.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	30.69	28.42	38.22	41.02	41.73	54.25	32.55	61.18	32.26	33.64	35.68	29.13
Merged-chr9-40192322-3	chr9	40192233	40192433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030713)	promoter-TSS (NM_030713)	17.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	37.55	41.5	45.07	34.19	44.59	41.39	43.51	50.78	57.63	43.18	62.81	28.19
Merged-chr6-35252616-3	chr6	35252506	35252706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-93.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	49.67	68.16	53.62	67.97	58.91	69.61	49.83	57.2	94.02	79.33	102.0	48.87
Merged-chr11-19925573-3	chr11	19925475	19925675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	CpG	1133.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	70.66	69.42	70.17	51.48	64.64	103.17	60.79	56.24	66.68	67.28	79.39	38.53
Merged-chr2-167376311-3	chr2	167376218	167376418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27140.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	15.34	26.41	23.96	26.14	24.96	47.35	45.18	49.46	40.71	36.15	46.73	32.58
Merged-chr11-53770378-3	chr11	53770266	53770466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-107.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	61.78	110.67	74.73	41.43	73.23	138.91	72.41	43.71	119.78	109.46	87.43	40.72
Merged-chr2-163054530-3	chr2	163054428	163054628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	-107.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	145.37	140.6	148.32	156.46	188.19	164.31	139.51	172.8	180.56	165.69	256.77	111.84
Merged-chr15-80710724-3	chr15	80710637	80710837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-576.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	65.82	77.47	71.31	69.98	86.32	85.61	38.86	65.13	98.93	102.93	118.59	54.51
Merged-chr7-4494284-3	chr7	4494193	4494393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	7387.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	33.11	21.63	25.1	31.77	27.0	27.59	28.9	26.47	24.19	19.08	25.12	19.74
Merged-chr6-114921879-3	chr6	114921779	114921979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-58.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	76.32	61.88	71.88	59.53	70.37	91.88	49.83	75.79	73.56	45.19	92.46	42.29
Merged-chr7-25687049-4	chr7	25687001	25687201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	99.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	71.88	62.63	42.21	51.48	54.82	82.47	49.16	33.98	67.07	95.9	76.38	31.64
Merged-chr5-110286327-3	chr5	110286265	110286465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008993)	promoter-TSS (NM_008993)	46.0	NM_011132	18973.0	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	98.53	52.07	96.98	86.47	85.5	113.51	96.99	86.16	125.88	121.51	193.96	65.16
Merged-chr6-113740705-3	chr6	113740615	113740815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-34.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	22.61	25.91	30.8	19.71	33.55	26.65	8.3	21.14	37.17	33.64	28.64	16.6
Merged-chr17-70832768-3	chr17	70832680	70832880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13997.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	189.38	183.62	190.53	212.36	220.1	242.08	221.89	224.8	225.6	194.31	326.11	145.04
Merged-chr1-144314668-3	chr1	144314555	144314755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-65551.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	56.13	53.07	83.29	39.01	61.37	76.51	32.88	70.18	59.4	67.78	54.77	24.12
Merged-chr11-100547182-3	chr11	100547108	100547308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 1 of 11)	MIR|SINE|MIR	1576.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	27.05	29.43	39.93	53.89	41.73	50.49	30.23	39.36	52.12	35.65	57.28	42.92
Merged-chr19-43753197-6	chr19	43753107	43753307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144874)	promoter-TSS (NM_144874)	184.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	45.23	27.92	11.98	26.55	27.0	30.73	25.91	25.01	48.19	52.22	45.22	23.81
Merged-chr6-145101100-1	chr6	145101000	145101200	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14536.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.25	1.51	5.7	4.42	10.23	1.88	3.65	11.3	2.16	1.0	4.02	8.46
Merged-chr1-191086738-3	chr1	191086638	191086838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11676.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	46.03	48.04	40.5	24.53	37.64	58.32	29.9	30.5	54.88	48.2	41.2	29.76
Merged-chr7-80200185-1	chr7	80200085	80200285	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	1744.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	2.42	3.27	11.41	4.02	1.64	2.82	7.97	11.19	6.69	3.01	6.53	8.46
Merged-chr17-74523546-3	chr17	74523431	74523631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4764.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	28.27	27.42	18.25	24.13	43.36	58.32	56.14	43.01	42.68	48.2	50.25	26.94
Merged-chr3-103791360-3	chr3	103791262	103791462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301306)	promoter-TSS (NM_001301306)	-87.0	NM_010432	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	76.32	65.9	58.19	67.97	94.91	105.05	61.78	96.17	98.34	108.96	90.95	51.69
Merged-chr10-91082874-3	chr10	91082802	91083002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	-137.0	NM_027078	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	237.03	258.32	267.54	217.59	243.01	302.28	235.51	259.99	290.31	313.82	315.06	168.22
Merged-chr15-25550470-2	chr15	25550376	25550576	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72074.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	39.57	18.36	19.4	12.07	21.27	21.01	10.3	16.15	26.75	22.59	36.18	12.84
Merged-chr9-108566946-3	chr9	108566854	108567054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	388.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	32.71	30.18	31.38	34.59	28.64	29.48	17.61	22.91	46.03	42.68	53.26	36.34
Merged-chr1-58742598-3	chr1	58742506	58742706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	12054.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	34.32	30.18	56.48	32.58	73.64	66.79	52.82	58.09	59.4	85.86	49.24	37.91
Merged-chr16-18392546-3	chr16	18392446	18392646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272032)	promoter-TSS (NM_001272032)	-17.0	NM_001272031	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	31.09	20.12	32.52	34.19	39.68	43.27	21.92	52.71	46.22	31.63	64.32	24.12
Merged-chr13-64107806-1	chr13	64107706	64107906	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 7 of 11)	intron (NM_001001321, intron 7 of 11)	-18605.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	7.27	0.75	4.56	2.01	1.64	1.25	1.0	2.1	24.98	9.04	27.64	18.17
Merged-chr17-24737681-3	chr17	24737571	24737771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013759, intron 1 of 4)	intron (NM_013759, intron 1 of 4)	1078.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	52.49	46.78	54.19	43.04	71.18	90.62	34.88	55.29	64.51	46.19	54.27	41.35
Merged-chr4-48196556-3	chr4	48196453	48196653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355184, intron 10 of 10)	intron (NM_001355184, intron 10 of 10)	16662.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	41.99	35.47	105.53	91.3	48.27	55.19	59.13	115.12	85.17	51.21	119.59	63.91
Merged-chr9-108492269-1	chr9	108492169	108492369	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168373, intron 1 of 26)	intron (NM_001168373, intron 1 of 26)	1593.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	3.63	1.51	1.14	0.8	2.45	2.51	1.66	2.97	25.77	15.06	30.15	16.92
Merged-chr11-88999428-3	chr11	88999324	88999524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	21.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	141.33	90.8	108.96	109.8	143.6	180.3	84.7	111.34	161.87	217.41	198.98	108.7
Merged-chr4-155993143-3	chr4	155993040	155993240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302469)	promoter-TSS (NM_001302469)	-13.0	NM_001302469	20318.0	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	30.69	41.75	21.11	25.74	37.64	40.45	20.59	24.59	65.3	63.27	49.24	28.51
Merged-chr16-20717723-3	chr16	20717631	20717831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145632)	promoter-TSS (NM_145632)	-95.0	NM_145632	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	209.57	232.91	229.89	222.01	203.73	250.54	159.77	216.67	235.04	232.98	323.6	151.93
Merged-chr9-63738225-3	chr9	63738125	63738325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	19769.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	41.19	37.23	65.03	65.16	74.05	73.38	44.51	57.2	71.79	73.31	81.4	40.41
Merged-chr18-84680701-3	chr18	84680597	84680797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	1362.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	58.15	38.23	67.31	53.89	91.23	123.23	117.59	107.66	125.09	98.91	123.11	67.35
Merged-chr4-16159755-3	chr4	16159657	16159857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3886.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	64.61	56.34	52.48	79.64	73.64	73.38	45.84	108.31	76.31	76.82	124.62	49.5
Merged-chr15-81522244-3	chr15	81522163	81522363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55947.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	30.69	35.72	35.37	30.16	55.64	35.12	21.26	41.69	41.5	50.21	62.81	26.31
Merged-chr11-26604429-3	chr11	26604329	26604529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10509.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	17.36	25.15	21.11	23.73	52.37	41.39	21.26	52.88	71.59	67.28	90.45	37.59
Merged-chr10-117282294-3	chr10	117282177	117282377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017372)	promoter-TSS (NM_017372)	-5.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	45.63	60.37	57.05	53.49	61.37	65.54	47.83	41.1	76.51	44.69	78.89	38.85
Merged-chr12-18610070-3	chr12	18609971	18610171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	95561.0	NM_001201330	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	25.04	27.17	43.93	45.45	54.0	52.99	56.8	76.85	106.8	62.26	151.75	52.63
Merged-chr16-17646450-3	chr16	17646338	17646538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166164)	promoter-TSS (NM_001166164)	-32.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	78.34	53.58	82.15	93.71	100.64	104.73	69.76	135.48	85.17	63.77	110.04	55.76
Merged-chr8-11463903-2	chr8	11463809	11464009	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-14020.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	62.59	72.19	94.7	108.19	132.14	124.17	125.23	126.45	153.81	188.29	199.99	122.8
Merged-chr15-101583394-1	chr15	101583294	101583494	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5178.0	NR_002868	432985.0	Mm.491078	NR_002868		Gm5476	EG432985|Kb17P	type II keratin Kb17P pseudogene	pseudo	0.0	0.5	1.14	1.61	25.36	39.51	26.24	28.57	2.16	1.0	0.0	0.94
Merged-chrX-74243763-3	chrX	74243650	74243850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290421, intron 1 of 46)	intron (NM_001290421, intron 1 of 46)	2784.0	NM_010227	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	46.44	41.5	65.6	63.15	73.23	80.59	96.0	84.03	62.94	82.85	102.0	50.75
Merged-chr4-144981339-3	chr4	144981226	144981426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	88189.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	31.9	17.36	21.68	20.11	24.96	31.67	17.94	40.82	40.71	31.13	21.1	20.05
Merged-chr5-150665725-3	chr5	150665615	150665815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201369)	promoter-TSS (NM_201369)	-103.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	222.9	227.13	249.86	277.92	281.46	306.99	224.22	304.29	307.23	330.39	384.9	190.15
Merged-chr6-42340288-3	chr6	42340161	42340361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-9567.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	41.99	42.01	40.5	42.63	37.64	30.1	39.53	57.03	52.12	43.68	40.2	31.95
Merged-chr9-83441157-3	chr9	83441054	83441254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-27.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	99.74	86.78	111.24	143.18	138.69	142.68	113.27	196.63	143.19	141.59	186.92	90.53
Merged-chr13-9159477-3	chr13	9159382	9159582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	65601.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	50.88	51.56	69.03	24.13	51.14	86.86	55.14	58.01	74.74	63.77	54.27	32.58
Merged-chr14-103059150-3	chr14	103059043	103059243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11073.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	120.33	145.13	164.29	141.98	159.55	265.28	191.99	211.54	198.06	198.83	248.73	108.39
Merged-chr1-64753312-3	chr1	64753216	64753416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15566.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	15.75	16.35	24.53	25.74	37.23	39.2	31.22	50.66	51.73	41.17	57.79	31.01
Merged-chr4-11455363-3	chr4	11455255	11455455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30603.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	45.23	44.77	50.2	37.0	81.0	72.44	44.18	93.2	84.58	82.35	94.97	46.36
Merged-chr15-83510955-3	chr15	83510865	83511065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178869)	promoter-TSS (NM_178869)	-58.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	76.72	85.02	82.15	102.56	135.0	124.8	62.45	106.99	117.82	102.93	133.16	65.16
Merged-chr7-80203177-3	chr7	80203090	80203290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4749.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	27.05	14.59	47.92	27.75	31.91	26.34	55.14	63.25	33.24	27.11	47.74	31.95
Merged-chr8-20557684-1	chr8	20557584	20557784	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57243.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.4	1.51	1.14	1.61	3.27	4.7	1.33	1.82	24.19	12.55	36.68	13.78
Merged-chr11-102425665-5	chr11	102425571	102425771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4651.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	29.07	25.4	37.08	26.55	34.36	48.6	43.85	30.67	33.04	46.19	44.22	36.97
Merged-chr17-81703127-1	chr17	81703027	81703227	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	35260.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.04	5.53	9.13	4.42	18.82	8.15	16.61	15.14	12.0	6.03	8.04	10.65
Merged-chr6-57703283-3	chr6	57703194	57703394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	CpG	839.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	73.89	74.2	59.33	63.95	108.41	79.65	100.32	119.47	82.81	119.0	175.37	70.48
Merged-chr8-70609636-3	chr8	70609553	70609753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1339.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	128.81	106.9	147.75	106.58	122.73	136.72	102.64	103.99	146.73	124.52	183.91	97.11
Merged-chr17-45572607-3	chr17	45572540	45572740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008302, intron 1 of 10)	CpG	621.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	46.84	43.51	32.52	21.32	45.82	63.97	35.21	54.31	62.35	77.32	60.3	52.32
Merged-chr4-150914559-3	chr4	150914487	150914687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4666.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	134.87	141.61	108.39	122.67	125.59	169.33	86.03	125.27	171.32	187.29	193.46	88.34
Merged-chr17-27826419-3	chr17	27826330	27826530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5888.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	100.14	89.8	126.64	72.8	90.41	136.72	59.13	86.72	109.56	85.36	97.48	48.56
Merged-chr5-124059836-3	chr5	124059740	124059940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27580.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	27.86	22.64	27.38	26.55	35.18	47.98	21.92	22.46	29.31	45.19	39.19	20.99
Merged-chr2-144204896-3	chr2	144204804	144205004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15614.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	25.44	22.64	31.95	29.36	25.36	30.73	27.9	46.91	34.03	33.64	34.17	29.76
Merged-chr2-51376279-1	chr2	51376179	51376379	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61621.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	1.51	2.28	0.0	22.5	15.99	15.61	24.59	5.51	6.53	11.56	3.76
Merged-chr3-79178221-3	chr3	79178127	79178327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32352.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	96.1	82.75	150.03	115.03	97.78	109.75	82.05	82.82	84.38	98.91	88.44	41.04
Merged-chr10-10457206-3	chr10	10457104	10457304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15110.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	156.27	139.6	167.14	149.62	155.05	195.67	180.37	193.43	227.37	204.36	277.37	143.16
Merged-chr4-95193206-3	chr4	95193102	95193302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140980.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	46.84	54.58	71.88	71.99	92.05	61.77	68.43	121.57	82.61	65.78	109.04	42.92
Merged-chr10-60349240-3	chr10	60349173	60349373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	2422.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	56.13	46.53	47.35	55.91	85.5	61.77	92.34	121.09	57.24	44.69	84.92	32.58
Merged-chr4-126259687-3	chr4	126259585	126259785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2720.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	48.86	41.5	54.76	26.95	47.87	63.66	28.57	35.97	61.17	44.69	52.26	28.19
Merged-chr7-42980290-3	chr7	42980164	42980364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-38534.0	NM_001105061	668612.0	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	30.28	34.46	37.65	45.85	32.73	43.27	34.21	29.97	32.85	48.7	36.68	29.45
Merged-chr8-126929690-3	chr8	126929600	126929800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_024214)	TTS (NM_024214)	16221.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	40.78	26.16	26.24	25.74	31.5	82.47	37.2	29.66	54.09	49.71	43.21	28.51
Merged-chr10-78009377-3	chr10	78009285	78009485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358793, intron 1 of 21)	CpG	422.0	NM_008826	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	51.69	53.07	58.19	78.43	67.09	63.97	53.15	59.69	74.54	80.34	130.14	44.17
Merged-chr7-25680260-3	chr7	25680149	25680349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-531.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	44.82	18.61	27.95	56.71	37.23	64.6	46.5	48.2	53.7	65.78	68.84	37.59
Merged-chr1-172632574-1	chr1	172632474	172632674	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026725, intron 1 of 1)	CpG	400.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	28.67	17.1	20.54	15.28	21.27	28.22	17.61	21.11	35.8	35.15	51.76	23.81
Merged-chr16-93144219-3	chr16	93144106	93144306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	208983.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	25.04	41.0	46.21	31.77	40.09	47.66	23.25	36.31	63.33	53.73	44.72	32.89
Merged-chr8-26963534-3	chr8	26963420	26963620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13816.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	83.18	103.88	110.67	117.44	121.5	169.64	106.96	131.36	136.89	143.1	163.31	73.3
Merged-chr10-80323646-3	chr10	80323527	80323727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008793, intron 10 of 14)	CpG-1280	-3079.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	10.09	13.08	6.85	16.09	16.77	16.93	15.28	11.21	13.57	21.59	16.08	12.53
Merged-chr5-34487614-3	chr5	34487505	34487705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26374.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	60.97	63.89	74.73	64.75	68.32	47.04	48.83	63.59	61.17	61.76	113.06	58.27
Merged-chr6-108902356-3	chr6	108902237	108902437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	73696.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	48.86	45.28	86.71	76.42	59.32	61.15	48.5	70.91	31.08	24.1	36.68	19.74
Merged-chr17-47593432-3	chr17	47593344	47593544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-23.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	106.6	105.14	107.25	99.34	144.82	158.67	78.06	111.25	146.93	149.13	141.2	76.75
Merged-chr4-108082457-3	chr4	108082360	108082560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 10 of 15)	B4|SINE|B4	-4897.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	33.52	18.86	25.1	21.72	25.36	31.98	16.61	38.61	37.76	32.64	55.27	25.06
Merged-chr2-32917730-3	chr2	32917636	32917836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	41602.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	48.05	49.55	82.72	52.29	125.59	143.3	83.37	114.79	76.12	104.44	124.11	48.87
Merged-chr5-142909293-3	chr5	142909214	142909414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2560.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	49.26	43.01	51.91	51.08	37.64	55.5	28.9	35.58	58.42	59.25	81.9	45.74
Merged-chr11-77493244-3	chr11	77493140	77493340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-172.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	39.17	39.24	30.8	35.39	46.23	59.89	29.9	43.77	44.25	51.21	74.87	39.47
Merged-chr2-155299693-1	chr2	155299593	155299793	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004721, intron 8 of 11)	intron (NM_001004721, intron 8 of 11)	23329.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.23	1.26	9.13	2.82	13.91	16.62	11.63	20.16	2.36	2.01	6.03	5.95
Merged-chrX-17608917-3	chrX	17608801	17609001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36576.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	25.84	31.19	24.53	43.84	48.68	47.66	44.51	55.54	52.52	35.15	53.77	27.57
Merged-chr1-4858121-1	chr1	4858021	4858221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	-207.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	20.59	21.63	18.25	19.71	10.64	19.44	13.62	24.25	23.8	43.68	27.13	27.88
Merged-chr1-24005625-3	chr1	24005523	24005723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	17.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	41.59	44.77	37.08	63.55	76.5	66.48	57.47	66.03	40.32	50.71	69.34	42.6
Merged-chr4-109000532-3	chr4	109000431	109000631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347169)	promoter-TSS (NM_001347169)	-124.0	NM_001346554	230598.0	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	191.8	186.38	162.58	166.11	206.6	184.07	124.56	167.75	202.2	258.58	237.67	129.69
Merged-chr6-91683424-3	chr6	91683330	91683530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-637.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	101.35	70.18	118.08	92.91	118.64	106.61	120.25	143.86	129.42	146.61	155.77	83.33
Merged-chr10-60934509-3	chr10	60934419	60934619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	3613.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	35.94	23.9	33.09	42.63	107.59	119.78	78.39	129.59	130.8	158.16	123.11	76.75
Merged-chr19-32389671-3	chr19	32389568	32389768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033198, intron 1 of 1)	CpG-7452	452.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	23.02	10.06	15.97	17.29	20.46	15.99	18.93	17.07	18.49	15.06	18.09	10.96
Merged-chr13-48513470-3	chr13	48513356	48513556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164575)	promoter-TSS (NM_001164575)	-20.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	55.32	31.44	51.91	37.0	57.27	55.82	27.57	59.27	58.61	56.24	75.37	25.06
Merged-chr14-20082855-3	chr14	20082771	20082971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026209, intron 1 of 1)	CpG	301.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	84.8	82.25	86.71	110.2	105.14	139.23	85.37	102.0	142.4	149.13	167.33	86.77
Merged-chr2-80315518-3	chr2	80315424	80315624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	58.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	128.81	122.49	85.0	116.24	110.87	150.51	93.67	99.73	111.33	152.14	154.26	66.1
Merged-chr1-131360946-3	chr1	131360857	131361057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-81394.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	29.07	25.66	46.21	27.35	47.46	66.16	37.87	57.53	33.83	23.6	24.62	20.68
Merged-chr15-84131645-3	chr15	84131525	84131725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8450.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	16.96	13.58	27.95	24.13	34.36	20.38	35.54	48.62	18.69	24.1	25.63	22.56
Merged-chr12-80644245-3	chr12	80644122	80644322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347409)	promoter-TSS (NM_001347409)	7.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	45.63	35.72	54.19	32.98	51.14	49.54	15.61	43.54	58.61	57.74	64.82	26.0
Merged-chr7-125621903-1	chr7	125621803	125622003	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	PB1D10|SINE|Alu	18474.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.83	2.01	2.28	2.41	2.05	3.76	7.97	7.68	1.18	1.0	4.02	1.88
Merged-chr10-128535990-3	chr10	128535880	128536080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10121.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	69.45	44.52	97.55	81.24	42.14	60.52	57.8	82.49	78.09	51.72	73.86	52.63
Merged-chr1-36961030-3	chr1	36960915	36961115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21488.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	60.17	58.1	70.74	63.55	59.32	58.95	46.5	54.76	66.87	46.19	71.86	48.56
Merged-chr7-24399662-3	chr7	24399584	24399784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	56.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	129.21	127.27	138.05	164.5	122.32	153.34	111.61	141.7	155.58	206.37	221.09	123.74
Merged-chr2-124647887-3	chr2	124647790	124647990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-5691.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	30.28	14.09	29.66	22.93	29.46	26.34	21.26	31.29	43.47	35.65	44.72	26.31
Merged-chr19-29067190-3	chr19	29067090	29067290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045687)	promoter-TSS (NR_045687)	-111.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	67.03	45.28	66.17	71.59	68.32	72.75	60.12	91.32	59.4	68.29	72.86	46.99
Merged-chr11-69098781-3	chr11	69098684	69098884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-165.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	212.8	164.0	209.36	169.73	227.46	240.51	142.17	180.56	222.26	230.47	232.65	132.2
Merged-chr13-37218776-3	chr13	37218677	37218877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	54.51	81.75	73.02	86.07	80.59	116.02	60.79	95.05	82.22	66.78	61.81	42.6
Merged-chr14-10430832-3	chr14	10430728	10430928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	22630.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	28.67	30.94	56.48	63.15	65.05	37.63	25.91	60.5	64.91	68.29	78.39	43.54
Merged-chr2-113442240-1	chr2	113442140	113442340	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	1176.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.85	6.29	2.85	3.62	4.5	2.2	6.98	4.46	3.74	1.51	5.02	2.82
Merged-chr2-77280807-3	chr2	77280721	77280921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-229.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	28.67	22.89	27.38	30.16	31.09	47.35	19.6	24.36	55.47	51.72	70.85	27.88
Merged-chr13-42103124-3	chr13	42103010	42103210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51089.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	27.86	24.65	32.52	27.35	32.73	26.65	18.6	34.71	34.03	33.64	38.69	28.19
Merged-chr4-126820110-3	chr4	126819997	126820197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	66327.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	14.54	20.12	23.39	20.91	29.05	22.26	20.59	23.66	26.55	29.62	20.6	11.9
Merged-chr8-3251292-3	chr8	3251208	3251408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	28309.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	60.97	46.28	91.84	89.29	60.55	46.72	57.8	78.9	52.12	34.65	78.39	23.49
Merged-chr3-144719255-3	chr3	144719133	144719333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1102.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	134.06	113.69	155.16	123.07	121.91	136.4	144.16	146.05	153.22	164.19	229.63	117.79
Merged-chr1-91051681-3	chr1	91051594	91051794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1750.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	21.0	17.36	12.55	24.13	11.05	20.07	19.27	12.08	13.18	15.57	13.57	11.28
Merged-chr17-51477526-3	chr17	51477446	51477646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29277.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	18.98	17.36	26.24	28.96	31.91	30.73	38.2	32.16	31.08	26.61	49.24	23.49
Merged-chr5-65335740-3	chr5	65335643	65335843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347358)	promoter-TSS (NM_001347358)	-104.0	NM_001347358	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	53.7	47.79	48.49	44.24	65.05	53.31	26.57	64.12	45.83	50.71	50.75	33.21
Merged-chr13-111686262-3	chr13	111686171	111686371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172593)	promoter-TSS (NM_172593)	93.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	41.99	36.22	44.5	34.99	37.23	44.21	27.9	54.14	45.63	52.72	76.88	30.7
Merged-chr2-75776812-1	chr2	75776712	75776912	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-55365.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	8.48	5.79	4.56	5.23	12.27	8.47	6.98	6.0	15.34	24.1	20.1	9.71
Merged-chr17-24632657-3	chr17	24632572	24632772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286720)	promoter-TSS (NM_001286720)	-10.0	NM_001357615	18207.0	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	29.07	19.12	17.11	25.34	38.05	40.76	22.59	36.0	35.21	24.1	26.63	24.12
Merged-chr6-72512668-3	chr6	72512612	72512812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31679.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	41.59	52.07	40.5	42.23	49.5	69.93	73.08	58.23	68.05	71.8	68.84	57.95
Merged-chr13-23709970-3	chr13	23709858	23710058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010424, intron 1 of 5)	MLTR14|LTR|ERV1	896.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	30.28	15.85	42.21	14.08	25.36	26.34	24.58	27.67	26.95	22.59	48.24	29.13
Merged-chr2-159784874-3	chr2	159784764	159784964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162477.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	75.11	63.89	72.45	57.51	67.5	61.77	54.81	62.78	52.12	61.76	53.77	28.51
Merged-chr18-14682990-4	chr18	14682898	14683098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161369)	promoter-TSS (NM_001161369)	-84.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	75.51	109.16	82.72	108.59	89.59	92.82	132.54	86.3	89.89	110.97	99.49	82.08
Merged-chr4-20033512-3	chr4	20033418	20033618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-8534.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	15.75	28.67	17.68	4.83	20.86	34.81	14.28	9.39	35.99	36.15	23.11	20.36
Merged-chr2-166627709-3	chr2	166627591	166627791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	63169.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	35.94	20.12	34.8	18.1	38.86	27.59	28.9	36.22	40.52	36.65	65.32	41.98
Merged-chr14-75863919-3	chr14	75863818	75864018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15995.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	60.17	35.97	48.49	49.47	63.82	58.64	48.16	75.14	65.5	48.7	81.9	62.34
Merged-chr16-27436764-1	chr16	27436664	27436864	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025615, intron 7 of 9)	intron (NM_001025615, intron 7 of 9)	47808.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.23	1.26	2.85	8.04	7.36	4.7	8.3	9.9	3.54	10.04	2.01	2.82
Merged-chr15-38528101-3	chr15	38527985	38528185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-8819.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	29.48	21.88	30.23	32.18	29.05	16.93	20.26	45.36	33.24	21.09	44.22	29.45
Merged-chr11-99043117-3	chr11	99043048	99043248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010517, intron 1 of 3)	intron (NM_010517, intron 1 of 3)	1904.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	21.0	20.63	13.12	24.13	14.73	15.37	14.28	21.14	21.44	13.05	12.06	17.54
Merged-chr3-117319848-3	chr3	117319746	117319946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177664, exon 7 of 7)	3' UTR (NM_177664, exon 7 of 7)	41030.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	48.86	53.83	37.65	65.56	60.96	79.65	61.78	87.36	66.09	43.68	74.37	26.31
Merged-chr11-69420357-3	chr11	69420271	69420471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6696.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	36.75	20.88	26.81	15.28	32.73	26.34	20.26	16.91	31.08	32.13	42.21	23.81
Merged-chr13-83601973-2	chr13	83601868	83602068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	28361.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	30.28	18.86	39.36	24.13	4.09	0.63	0.66	0.5	33.04	36.15	48.24	19.74
Merged-chr2-13786160-3	chr2	13786064	13786264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145838, intron 2 of 7)	L1_Mus4|LINE|L1	7356.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	48.05	48.8	43.35	33.38	41.32	68.36	36.54	16.77	56.25	33.64	61.81	24.75
Merged-chr6-42245883-3	chr6	42245787	42245987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029555)	promoter-TSS (NM_029555)	-48.0	NM_029555	76263.0	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	65.82	64.14	49.63	94.92	90.0	114.77	63.44	118.09	83.2	84.35	152.75	70.17
Merged-chr10-85125852-3	chr10	85125732	85125932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028832, intron 2 of 2)	L2|LINE|L2	2195.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	33.11	21.88	26.81	39.82	27.82	18.81	19.6	41.55	30.49	18.58	52.76	27.88
Merged-chr4-132515655-3	chr4	132515556	132515756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5200.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	175.65	156.45	164.29	160.48	174.69	190.97	119.91	155.24	198.85	176.24	205.01	140.34
Merged-chr10-24164766-3	chr10	24164706	24164906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	15489.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	70.26	82.5	93.55	65.56	75.68	81.84	69.76	65.22	97.16	107.95	116.58	54.2
Merged-chr18-82914428-5	chr18	82914282	82914482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-250.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	44.82	34.46	47.92	34.59	31.09	49.54	38.86	45.17	61.37	68.29	67.33	50.75
Merged-chr15-58134553-1	chr15	58134453	58134653	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027435, intron 1 of 27)	CpG	529.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	8.48	16.85	13.69	15.28	11.86	12.54	20.59	14.52	20.85	28.12	28.64	25.69
Merged-chr11-75510806-3	chr11	75510725	75510925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029938, exon 4 of 8)	exon (NM_001029938, exon 4 of 8)	731.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	66.63	54.33	59.9	57.92	76.09	73.38	33.55	43.01	69.63	85.36	79.39	74.87
Merged-chr6-134673895-3	chr6	134673808	134674008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	32968.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	26.65	11.32	26.24	25.34	26.18	11.92	10.63	26.3	47.99	33.64	55.78	20.36
Merged-chr14-67715864-3	chr14	67715742	67715942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110162)	promoter-TSS (NM_001110162)	-1.0	NM_175384	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	384.41	404.71	415.86	393.35	401.33	446.84	378.34	456.65	487.98	588.97	661.27	308.57
Merged-chr14-50926738-3	chr14	50926654	50926854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310505)	TTS (NM_001310505)	1805.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	24.63	18.36	24.53	17.29	29.46	29.16	16.28	36.93	28.13	16.57	36.68	21.3
Merged-chr5-122769000-2	chr5	122768897	122769097	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	10413.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	12.11	11.32	12.55	6.03	19.23	34.18	17.61	15.59	18.88	18.08	22.11	5.64
Merged-chr6-86548107-3	chr6	86547997	86548197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20696.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	31.09	73.45	77.58	22.12	21.68	23.52	12.62	9.59	47.8	30.13	30.65	17.23
Merged-chr18-67289136-3	chr18	67289041	67289241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053261)	promoter-TSS (NM_053261)	-82.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	68.65	71.18	77.58	79.23	82.64	84.66	68.1	59.47	124.31	116.49	143.21	71.42
Merged-chr19-46045172-3	chr19	46045057	46045257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001113408, exon 1 of 11)	5' UTR (NM_001113408, exon 1 of 11)	154.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	61.78	48.04	41.64	51.88	44.18	49.23	46.5	46.88	57.43	53.22	61.3	37.59
Merged-chr9-45252651-3	chr9	45252594	45252794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14013.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	50.88	65.4	39.36	30.16	56.46	101.91	54.14	33.06	57.63	85.86	57.79	26.31
Merged-chr11-90638164-3	chr11	90638066	90638266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011505)	promoter-TSS (NM_011505)	-18.0	NM_199008	69802.0	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	50.47	54.33	57.05	47.46	68.32	50.17	24.58	48.08	73.76	75.82	73.86	53.26
Merged-chr2-154791901-3	chr2	154791796	154791996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139513, intron 1 of 8)	CpG	786.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	30.28	36.72	39.36	27.35	24.55	38.88	16.94	17.44	41.3	36.15	35.17	14.1
Merged-chr12-119230790-3	chr12	119230686	119230886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177290, intron 1 of 13)	intron (NM_177290, intron 1 of 13)	7490.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	19.79	19.12	22.82	30.57	29.46	24.15	29.9	44.64	32.06	40.17	47.74	41.04
Merged-chr12-98265220-3	chr12	98265120	98265320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3415.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	16.15	11.82	22.25	18.1	22.91	20.07	14.28	33.64	19.08	6.53	30.65	17.54
Merged-chr11-101171454-3	chr11	101171314	101171514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-42.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	88.03	80.24	68.45	71.59	106.37	101.28	75.4	71.55	125.29	107.45	117.08	78.32
Merged-chr1-134400023-1	chr1	134399923	134400123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5758.0	NM_028057	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	33.92	21.38	43.35	25.74	0.0	1.25	0.0	0.59	1.77	1.51	0.5	3.13
Merged-chr13-22041005-1	chr13	22040905	22041105	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175656)	TTS (NM_175656)	357.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	12.11	20.12	17.68	22.12	24.55	27.28	8.64	14.38	13.18	19.08	21.1	21.93
Merged-chr16-50396372-3	chr16	50396260	50396460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36029.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	62.18	43.51	64.46	76.42	46.64	63.66	44.84	70.54	85.95	59.25	81.4	39.47
Merged-chr1-165642458-3	chr1	165642363	165642563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7922.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	62.18	64.89	62.18	66.36	54.41	69.3	73.74	42.87	56.45	71.8	66.83	48.56
Merged-chr6-57707936-3	chr6	57707842	57708042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	L1_Mur3|LINE|L1	5487.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	20.19	12.07	38.22	31.37	39.68	39.51	45.51	45.73	44.45	37.66	45.73	24.43
Merged-chr7-30588908-3	chr7	30588804	30589004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	-178.0	NM_029274	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	115.89	102.37	129.49	112.21	113.73	147.38	88.03	98.5	172.3	146.11	221.09	104.32
Merged-chr11-51921568-3	chr11	51921472	51921672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46059.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	57.34	53.58	62.18	67.97	74.05	95.95	45.51	71.13	83.4	72.3	97.48	46.36
Merged-chr19-40513829-3	chr19	40513732	40513932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-20.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	164.75	169.03	181.98	203.92	235.23	222.32	164.09	244.23	199.44	191.3	304.0	132.83
Merged-chr12-35117714-3	chr12	35117600	35117800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 17 of 25)	intron (NM_001014973, intron 17 of 25)	70511.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	27.86	18.11	32.52	25.34	29.05	17.87	21.92	42.17	32.26	18.58	29.65	23.81
Merged-chr9-108691563-3	chr9	108691451	108691651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-592.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	86.01	58.1	95.84	96.13	92.46	68.36	84.04	75.39	71.2	43.18	118.08	55.76
Merged-chr7-19844744-3	chr7	19844658	19844858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7245.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	121.95	87.53	103.25	30.16	86.32	174.35	94.34	64.23	124.5	114.48	97.48	43.54
Merged-chr15-34238154-3	chr15	34238061	34238261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033521, exon 1 of 7)	5' UTR (NM_033521, exon 1 of 7)	135.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	33.92	34.96	37.65	57.51	41.73	46.1	39.53	53.8	65.69	38.16	66.83	39.47
Merged-chr2-130424815-3	chr2	130424708	130424908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-167.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	58.15	55.34	32.52	41.43	70.77	84.35	43.51	67.46	74.54	64.77	61.81	38.22
Merged-chr4-53082093-3	chr4	53081994	53082194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013454, exon 16 of 50)	exon (NM_013454, exon 16 of 50)	70214.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	23.02	25.15	49.06	30.57	65.05	58.01	60.12	77.89	64.12	56.74	117.08	46.36
Merged-chr5-43094582-3	chr5	43094471	43094671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138892.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	33.92	29.93	55.9	28.96	29.86	36.06	27.57	66.08	44.84	49.21	53.77	38.85
Merged-chr12-25092704-6	chr12	25092606	25092806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3386.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	40.38	47.54	34.8	42.23	38.05	39.51	30.89	30.7	42.29	47.7	36.68	29.13
Merged-chr10-28074748-1	chr10	28074648	28074848	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008983)	promoter-TSS (NM_008983)	-72.0	NM_001359355	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	5.25	5.03	7.42	12.47	13.09	15.68	12.95	22.23	3.15	3.51	1.0	0.94
Merged-chr2-75698223-3	chr2	75698121	75698321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	6442.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	46.03	45.78	47.35	23.33	50.32	39.2	37.87	35.07	56.65	52.22	65.83	35.09
Merged-chr3-57735939-3	chr3	57735836	57736036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304456)	promoter-TSS (NM_001304456)	-121.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	188.98	133.56	123.22	187.02	145.64	209.78	168.41	165.53	198.85	235.49	237.67	118.1
Merged-chr11-26601969-3	chr11	26601856	26602056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	-8036.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	65.82	56.34	67.31	96.13	62.18	68.99	78.72	83.27	81.23	71.8	84.42	52.0
Merged-chr13-41019957-3	chr13	41019829	41020029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	3679.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	19.38	23.9	21.68	23.33	35.59	27.28	21.59	26.24	39.53	37.66	49.24	20.99
Merged-chr15-103258450-3	chr15	103258361	103258561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302341)	promoter-TSS (NM_001302341)	-58.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	85.2	67.66	70.17	65.96	90.0	102.22	83.37	117.42	75.72	73.31	103.51	50.75
Merged-chr7-6156174-3	chr7	6156079	6156279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-208.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	117.5	118.97	130.63	165.3	149.73	161.8	173.73	163.54	136.7	150.63	228.13	124.37
Merged-chr10-51454141-3	chr10	51454043	51454243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26469.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	104.99	96.34	140.9	119.45	106.37	149.57	101.98	135.22	148.7	139.59	162.8	76.44
Merged-chr11-83834439-3	chr11	83834351	83834551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16418.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	91.26	88.03	78.72	66.77	85.5	117.28	58.46	72.42	101.69	126.03	83.91	67.98
Merged-chr8-109863613-3	chr8	109863518	109863718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-4985.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	24.63	21.13	35.94	47.86	46.23	41.71	24.91	51.17	48.58	36.65	67.84	26.94
Merged-chr5-63831247-3	chr5	63831136	63831336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18741.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	22.21	20.12	25.67	23.33	26.59	17.87	15.28	42.95	30.49	21.09	42.21	16.6
Merged-chr7-90034113-3	chr7	90033995	90034195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4936.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	91.66	67.16	102.11	105.78	105.55	88.43	65.44	149.1	102.28	92.39	121.1	98.99
Merged-chr8-116946589-3	chr8	116946473	116946673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3180.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	23.02	10.82	21.68	17.29	19.64	14.11	21.59	25.43	11.21	17.57	26.13	17.54
Merged-chr15-94589882-3	chr15	94589770	94589970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008971)	promoter-TSS (NM_008971)	-46.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	93.28	76.21	81.0	66.77	115.78	133.58	64.77	109.04	190.2	169.21	222.6	114.03
Merged-chr9-21955940-5	chr9	21955798	21955998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025870, exon 1 of 2)	exon (NM_025870, exon 1 of 2)	108.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	96.91	99.61	120.94	85.27	76.09	119.16	151.14	67.12	83.2	108.96	102.0	82.7
Merged-chr1-74284905-3	chr1	74284790	74284990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	-144.0	NM_025580	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	280.64	300.07	294.93	321.76	346.1	427.4	282.01	332.1	405.57	474.49	536.15	263.14
Merged-chr10-98612082-3	chr10	98611954	98612154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-260187.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	41.19	33.2	48.49	13.67	40.5	62.4	26.91	21.79	52.12	32.13	31.66	13.47
Merged-chr1-175692829-3	chr1	175692719	175692919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-187.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	297.6	286.24	281.81	248.96	363.28	404.51	294.97	329.19	461.82	491.56	621.07	250.3
Merged-chr13-20090587-3	chr13	20090505	20090705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080288)	promoter-TSS (NM_080288)	98.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	32.71	34.71	30.8	27.75	28.64	37.94	28.23	36.14	42.09	44.69	42.21	27.57
Merged-chr2-167058466-3	chr2	167058350	167058550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-4484.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	49.26	43.01	36.51	38.61	59.32	37.32	41.52	47.02	56.06	31.13	33.67	23.81
Merged-chr5-134522070-3	chr5	134521979	134522179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	30355.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	39.17	32.2	59.33	52.69	48.27	51.74	35.87	50.05	54.88	54.23	72.86	23.81
Merged-chr2-116972286-3	chr2	116972188	116972388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72136.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	130.83	121.74	104.39	99.75	100.64	165.57	84.37	79.4	125.09	135.57	132.15	73.3
Merged-chr6-33060336-3	chr6	33060228	33060428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-68.0	NM_025336	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	157.88	145.63	146.61	183.81	187.78	190.97	161.1	235.99	204.56	200.34	274.86	149.43
Merged-chr10-127290648-3	chr10	127290545	127290745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-148.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	191.0	153.94	167.71	160.08	198.82	242.08	126.56	185.92	258.64	267.62	324.1	139.4
Merged-chr5-143732473-3	chr5	143732362	143732562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-182.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	130.43	120.98	123.79	108.59	100.64	145.81	100.98	109.32	174.66	166.2	184.41	92.41
Merged-chr1-40790669-3	chr1	40790581	40790781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172499)	promoter-TSS (NM_172499)	-24.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	40.38	37.23	50.77	44.64	88.37	68.67	38.2	93.11	70.02	70.8	87.93	47.3
Merged-chr7-123369970-3	chr7	123369845	123370045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122643)	promoter-TSS (NM_001122643)	-30.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	187.36	220.59	209.36	172.14	203.73	196.92	90.35	128.38	231.5	294.74	220.59	147.24
Merged-chr6-108661672-3	chr6	108661562	108661762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-728.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	31.9	30.18	39.93	22.12	35.59	34.81	32.22	30.95	40.91	32.13	43.72	23.49
Merged-chr17-35173505-3	chr17	35173404	35173604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	2548.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	17.36	21.88	25.1	20.51	29.05	17.25	12.29	16.85	31.08	25.61	26.63	17.54
Merged-chr7-101362050-3	chr7	101361983	101362183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14014.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	9.69	24.9	17.11	16.89	24.96	37.32	29.9	17.07	35.01	49.71	25.63	22.87
Merged-chr1-162740108-3	chr1	162740031	162740231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081290, intron 1 of 34)	CpG	425.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	31.5	47.29	25.1	42.23	30.68	30.42	48.16	41.16	37.37	45.69	63.31	32.27
Merged-chr9-95072807-3	chr9	95072689	95072889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 12 of 15)	intron (NM_177909, intron 12 of 15)	320960.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	29.07	16.85	41.64	20.51	28.23	23.83	29.9	33.93	13.37	7.53	27.13	15.04
Merged-chr10-80249181-3	chr10	80249117	80249317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029272)	promoter-TSS (NM_029272)	-235.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	54.11	53.32	49.06	49.07	48.27	69.93	37.87	47.8	59.2	77.83	44.72	65.16
Merged-chr13-80884808-3	chr13	80884707	80884907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042591, intron 1 of 7)	intron (NM_001042591, intron 1 of 7)	-1288.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	34.32	19.37	23.39	32.58	42.55	25.4	24.58	33.7	25.96	30.63	36.68	29.76
Merged-chr14-31195346-3	chr14	31195236	31195436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11490.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	22.21	24.9	29.66	10.46	48.68	62.09	32.88	27.22	29.31	29.12	30.65	12.22
Merged-chr15-78597974-3	chr15	78597870	78598070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	923.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	32.3	30.43	30.23	33.38	60.96	46.41	55.14	49.57	45.24	57.74	56.78	31.01
Merged-chr7-100428513-3	chr7	100428419	100428619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 20 of 32)	intron (NM_001017985, intron 20 of 32)	-44472.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	23.02	15.09	35.94	18.9	29.05	36.69	26.57	39.95	29.11	26.11	33.67	27.57
Merged-chr19-38819275-3	chr19	38819178	38819378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021315)	promoter-TSS (NM_021315)	-41.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	77.93	76.46	146.61	92.91	99.41	103.17	88.36	125.47	102.47	80.34	127.13	75.18
Merged-chr9-119340004-3	chr9	119339894	119340094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010851)	promoter-TSS (NM_010851)	46.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	38.76	55.08	29.09	30.97	30.27	52.37	24.58	28.04	47.01	53.73	58.79	23.49
Merged-chr13-88459033-3	chr13	88458949	88459149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-362423.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	21.0	16.1	40.5	21.72	21.27	25.09	30.56	31.37	33.04	20.59	52.26	26.94
Merged-chr8-71671740-3	chr8	71671654	71671854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029873)	promoter-TSS (NM_001029873)	3.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	30.28	26.91	23.39	38.21	45.82	42.65	19.27	46.65	56.65	42.68	49.75	41.35
Merged-chr3-145738164-3	chr3	145738074	145738274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20518.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	39.98	22.89	30.8	44.24	68.32	52.99	78.06	74.41	51.93	47.7	52.26	53.57
Merged-chr10-110745405-3	chr10	110745311	110745511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178609)	promoter-TSS (NM_178609)	-28.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	48.46	47.04	55.33	61.94	56.87	47.98	53.48	84.39	79.66	90.88	103.01	72.99
Merged-chr5-29845264-3	chr5	29845167	29845367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109331.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	56.94	60.87	115.23	106.99	62.59	74.63	79.39	103.35	48.19	61.76	77.38	39.16
Merged-chr9-122351712-3	chr9	122351611	122351811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	95.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	139.71	137.59	104.39	100.95	151.78	183.44	106.29	97.57	198.26	166.7	234.16	93.35
Merged-chr6-108659496-3	chr6	108659391	108659591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	CpG	-1138.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	117.1	101.37	151.74	110.6	144.41	168.39	154.13	203.44	134.93	106.45	180.89	83.64
Merged-chr14-61861584-3	chr14	61861499	61861699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179226.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	95.7	98.85	100.97	137.15	87.55	110.69	79.06	98.97	67.07	80.34	77.88	70.48
Merged-chr14-20393646-3	chr14	20393553	20393753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155747)	promoter-TSS (NR_155747)	-19.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	242.28	248.51	283.52	244.14	270.42	295.39	209.6	281.5	257.07	250.05	315.56	171.98
Merged-chr17-17827032-3	chr17	17827007	17827207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3081.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	13.73	16.35	15.97	18.9	26.59	31.98	36.21	23.47	15.93	33.14	25.63	17.23
Merged-chr9-3029453-1	chr9	3029353	3029553	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	9290.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	39.98	30.94	34.23	30.16	46.23	20.38	82.05	3.95	29.31	33.14	31.15	53.88
Merged-chr13-115150075-2	chr13	115149987	115150187	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48123.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.23	1.26	0.0	1.61	39.27	36.37	36.87	51.0	47.6	30.63	33.67	23.81
Merged-chr4-112256184-1	chr4	112256084	112256284	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177578, intron 4 of 7)	MTD|LTR|ERVL-MaLR	23939.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	19.87	18.58	38.19	20.99
Merged-chr4-41755528-3	chr4	41755437	41755637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	235.0	NR_155499	105247116.0	Mm.488220	NR_155499		Gm42274	-	predicted gene, 42274	ncRNA	39.17	33.96	33.66	35.8	41.73	39.82	42.19	33.25	48.78	42.18	50.75	38.22
Merged-chr6-127447840-3	chr6	127447726	127447926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346513, intron 1 of 5)	intron (NM_001346513, intron 1 of 5)	986.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	36.75	23.9	20.54	28.56	21.27	26.03	10.63	17.3	37.17	41.67	33.16	17.23
Merged-chr10-95684903-3	chr10	95684794	95684994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-120748.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	29.48	15.85	32.52	41.83	38.86	21.95	18.6	21.64	28.32	34.65	43.72	18.48
Merged-chr2-70939291-1	chr2	70939191	70939391	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	79083.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.8	2.86	5.02	2.66	2.02	15.74	4.52	21.61	5.01
Merged-chr5-100846388-3	chr5	100846280	100846480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172715, intron 1 of 12)	CpG	151.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	32.3	28.42	38.22	36.2	36.41	41.39	31.89	40.15	15.74	32.64	30.65	22.56
Merged-chr11-90241185-3	chr11	90241075	90241275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67B|LTR|ERV1	-8301.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	49.26	25.15	54.76	49.87	49.5	50.17	70.42	77.72	30.09	34.65	51.25	26.31
Merged-chr9-101251740-3	chr9	101251621	101251821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	111.0	NM_001161362	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	131.23	153.68	149.46	173.35	141.55	157.73	224.22	162.56	126.86	166.7	185.92	134.39
Merged-chr9-71896584-3	chr9	71896478	71896678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-482.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	28.67	34.21	39.93	49.87	54.41	44.84	24.25	50.61	78.48	61.76	82.41	55.13
Merged-chr6-89449003-3	chr6	89448902	89449102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-86389.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	59.36	78.23	93.55	92.91	54.82	42.33	50.82	70.54	46.42	35.15	55.78	26.31
Merged-chr1-156036496-3	chr1	156036399	156036599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-19.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	84.8	94.83	143.18	106.18	98.18	111.63	76.4	91.35	149.09	159.17	193.96	108.39
Merged-chr9-78481821-3	chr9	78481715	78481915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-91.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	149.4	153.43	124.93	155.25	165.69	192.22	129.88	158.05	252.15	249.04	307.02	139.4
Merged-chr15-58019755-3	chr15	58019628	58019828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14566.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	49.67	39.24	77.58	61.13	78.55	68.36	59.46	66.76	79.07	70.29	82.41	41.35
Merged-chr7-100855992-3	chr7	100855898	100856098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	7415.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	73.09	59.36	92.41	88.08	67.09	79.33	55.47	81.03	102.47	73.31	133.16	62.65
Merged-chr17-45557605-3	chr17	45557535	45557735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1935.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	62.99	49.8	40.5	23.33	48.27	62.4	42.85	17.94	65.5	68.29	68.84	25.06
Merged-chr11-98708728-3	chr11	98708615	98708815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361995, intron 19 of 25)	L1MB2|LINE|L1	7402.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	77.53	67.16	49.06	57.51	74.05	101.28	64.11	58.79	88.51	103.43	68.34	74.87
Merged-chr17-33759930-3	chr17	33759828	33760028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008997, intron 1 of 4)	CpG	558.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	73.89	72.69	53.05	58.72	65.05	73.38	45.18	58.18	77.3	97.41	84.92	61.09
Merged-chr5-139405228-3	chr5	139405144	139405344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1143.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	81.16	66.15	133.49	96.93	79.37	119.47	92.01	138.22	76.31	64.27	126.12	79.57
Merged-chr15-58076302-1	chr15	58076202	58076402	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001042438, exon 1 of 5)	5' UTR (NM_001042438, exon 1 of 5)	206.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	81.16	73.7	62.75	79.64	80.18	103.48	81.05	57.59	87.92	127.53	99.49	76.44
Merged-chr18-65695570-3	chr18	65695468	65695668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2700.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	71.88	55.08	100.4	123.88	129.69	125.74	136.19	146.52	112.11	83.35	169.84	120.61
Merged-chr2-157500581-3	chr2	157500476	157500676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59502.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	37.15	33.7	33.66	31.77	57.27	61.77	41.19	62.44	53.5	46.7	56.78	43.54
Merged-chrX-99470736-3	chrX	99470645	99470845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290555)	promoter-TSS (NM_001290555)	-10.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	22.61	18.36	22.82	19.31	33.55	42.65	19.93	18.73	45.04	56.74	55.78	29.13
Merged-chr8-34846204-3	chr8	34846129	34846329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 20 of 26)	intron (NM_175091, intron 20 of 26)	38619.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	52.09	47.79	69.03	62.34	54.82	65.85	44.18	88.93	103.65	76.32	104.52	69.55
Merged-chr3-65392659-3	chr3	65392551	65392751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026155)	promoter-TSS (NM_026155)	-98.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	140.12	154.69	163.15	192.25	218.46	220.44	166.75	221.61	222.65	250.55	287.42	136.58
Merged-chr1-172206738-3	chr1	172206613	172206813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	91.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	28.27	34.96	34.23	25.74	29.46	40.76	17.61	17.13	49.37	35.65	42.71	30.7
Merged-chr10-117397329-3	chr10	117397220	117397420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-20347.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	25.04	18.86	33.66	34.59	32.73	46.1	27.9	57.22	44.65	29.62	57.28	30.7
Merged-chr16-32247140-3	chr16	32247032	32247232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173439)	promoter-TSS (NM_173439)	-95.0	NM_001185162	68980.0	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	90.85	106.9	82.72	76.02	107.59	111.95	62.78	79.18	108.57	106.45	110.55	58.89
Merged-chr7-24972153-3	chr7	24972076	24972276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010261, exon 2 of 5)	exon (NM_010261, exon 2 of 5)	552.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	21.4	36.97	25.67	32.98	39.27	28.54	49.16	26.38	29.7	22.59	45.73	33.83
Merged-chr14-121878471-3	chr14	121878381	121878581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	23.0	NR_131000	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	211.19	250.27	197.38	208.74	198.42	320.47	190.67	210.65	338.11	340.93	407.01	165.09
Merged-chr12-3960032-3	chr12	3959950	3960150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008895, exon 3 of 3)	exon (NM_008895, exon 3 of 3)	5105.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	27.46	24.65	18.25	19.71	29.05	47.66	19.6	29.16	29.5	33.64	40.2	25.69
Merged-chr12-40522657-3	chr12	40522570	40522770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	76617.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	39.57	40.5	46.78	55.91	38.86	49.86	31.89	47.16	42.88	31.63	36.68	24.12
Merged-chr2-29055248-3	chr2	29055126	29055326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166705)	promoter-TSS (NM_001166705)	-160.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	29.88	26.66	22.25	30.57	32.73	23.2	15.28	22.51	28.32	23.1	19.6	23.81
Merged-chr6-120155055-3	chr6	120154946	120155146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	116.29	89.8	120.94	154.85	164.46	169.96	135.86	156.67	174.66	139.08	162.3	95.23
Merged-chr7-67953224-3	chr7	67953110	67953310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	CpG-13221	953.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	20.19	26.16	25.67	15.69	26.18	33.24	13.95	23.44	16.52	30.13	19.6	10.65
Merged-chr12-84020736-3	chr12	84020627	84020827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11225.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	62.18	27.17	42.78	37.4	46.64	42.02	39.86	29.64	46.22	51.72	41.2	28.19
Merged-chr17-33817721-3	chr17	33817625	33817825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6837.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	153.04	154.19	156.31	153.64	180.01	192.85	123.24	137.92	185.87	178.25	219.58	111.52
Merged-chr15-98093400-3	chr15	98093292	98093492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144851, exon 1 of 18)	5' UTR (NM_144851, exon 1 of 18)	177.0	NM_144851	223870.0	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	51.28	56.34	38.22	35.39	47.05	43.59	24.58	33.76	57.04	55.23	63.82	34.77
Merged-chr4-8837672-3	chr4	8837571	8837771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	86347.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	58.15	38.23	82.15	51.08	58.5	74.63	76.4	81.79	107.2	83.35	127.13	67.04
Merged-chr2-129490068-3	chr2	129489962	129490162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46540.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	77.53	62.63	67.88	48.67	57.68	85.29	42.19	36.53	86.35	82.85	49.24	39.47
Merged-chr9-62894684-3	chr9	62894588	62894788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32664.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	16.56	16.1	20.54	29.76	22.09	19.76	21.26	33.42	32.26	36.15	31.15	26.31
Merged-chr4-33285610-3	chr4	33285523	33285723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24688.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	37.96	36.22	57.05	46.25	45.82	46.41	31.22	44.24	43.27	36.15	49.24	25.69
Merged-chr16-18876595-3	chr16	18876495	18876695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	42.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	156.67	112.43	155.73	113.82	182.05	148.01	119.91	162.17	147.52	128.04	198.98	84.58
Merged-chr5-105567102-3	chr5	105566995	105567195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47624.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	54.92	48.54	67.88	20.11	63.82	129.19	64.77	34.65	107.98	95.4	104.52	46.05
Merged-chr1-58973506-3	chr1	58973413	58973613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172406)	promoter-TSS (NM_172406)	-9.0	NM_172656	227154.0	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	88.43	76.46	66.17	71.19	109.64	89.37	57.8	97.79	130.01	135.57	139.19	79.88
Merged-chr14-100934764-3	chr14	100934655	100934855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265314.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	36.34	32.7	61.61	38.21	57.68	46.41	43.51	69.17	68.45	37.66	71.86	23.81
Merged-chr2-167503485-3	chr2	167503418	167503618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360930)	promoter-TSS (NM_001360930)	75.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	18.57	23.9	29.09	22.12	23.73	25.09	20.26	11.83	24.78	29.62	22.11	20.68
Merged-chr12-4907531-5	chr12	4907387	4907587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	33.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	44.82	67.16	40.5	38.21	38.46	59.89	34.21	39.25	56.84	59.25	54.27	37.59
Merged-chr17-88064713-3	chr17	88064618	88064818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001348248, exon 1 of 23)	5' UTR (NM_001348248, exon 1 of 23)	214.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	39.98	53.32	31.38	19.71	37.23	69.93	32.55	24.39	58.22	54.73	40.2	28.82
Merged-chr19-21175803-3	chr19	21175713	21175913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71103.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	22.21	25.91	33.66	44.64	23.73	20.07	19.27	40.93	24.0	16.07	23.62	25.37
Merged-chr13-23716445-3	chr13	23716323	23716523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5569.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	67.43	52.32	108.96	109.8	51.96	39.51	74.07	94.46	65.5	54.73	114.06	46.68
Merged-chr8-25602127-3	chr8	25602032	25602232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-152.0	NM_001001735	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	86.82	90.55	95.27	78.83	96.96	117.9	69.42	88.63	135.91	131.05	169.34	74.87
Merged-chr5-108065611-3	chr5	108065453	108065653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253877)	promoter-TSS (NM_001253877)	-121.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	62.99	77.72	49.06	70.79	74.87	88.11	40.86	75.67	93.23	96.4	81.9	41.35
Merged-chr10-89741225-3	chr10	89741116	89741316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3775.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	16.15	13.33	21.68	18.9	24.14	28.22	17.27	42.79	28.32	34.14	24.62	25.37
Merged-chr2-120137589-3	chr2	120137473	120137673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	17002.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	36.34	30.69	27.95	28.56	33.14	33.87	15.61	28.09	30.88	25.11	37.18	23.18
Merged-chr16-50691005-3	chr16	50690906	50691106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-36126.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	48.05	18.61	37.65	25.74	28.64	32.93	34.55	41.58	27.34	24.1	47.23	11.59
Merged-chr1-131691620-3	chr1	131691536	131691736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	2941.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	93.68	67.16	110.1	106.18	101.87	85.92	102.97	147.7	125.68	110.46	194.46	99.62
Merged-chr9-111058082-3	chr9	111057975	111058175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	-557.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	75.91	84.01	73.59	45.45	49.09	90.0	41.85	42.9	113.69	71.3	83.91	35.71
Merged-chr13-47043378-3	chr13	47043262	47043462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	-137.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	232.99	260.83	256.71	260.63	310.92	376.6	256.77	205.6	367.22	441.85	401.48	219.91
Merged-chr19-5571990-3	chr19	5571860	5572060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033448)	TTS (NM_001033448)	3936.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	27.05	24.9	51.91	30.97	68.32	43.59	39.53	62.13	46.42	50.71	57.28	31.64
Merged-chr1-24550685-1	chr1	24550585	24550785	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	36752.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.63	3.52	10.84	5.23	16.77	5.64	12.29	10.35	5.7	8.54	16.08	2.51
Merged-chr2-156190546-3	chr2	156190393	156190593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6154.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	32.3	31.19	25.1	19.71	18.0	21.01	10.3	6.17	44.84	49.21	44.22	26.31
Merged-chr3-54601294-2	chr3	54601184	54601384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91531.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	37.55	24.65	46.21	36.2	0.0	0.0	1.33	0.0	42.29	37.16	23.11	18.48
Merged-chr13-37793094-2	chr13	37792995	37793195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32943.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	49.26	54.08	53.62	18.5	27.0	51.11	13.62	27.56	25.37	6.53	6.03	6.58
Merged-chr2-91947927-3	chr2	91947809	91948009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2439.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	111.45	121.24	136.91	85.67	117.82	76.2	80.05	113.75	82.61	85.36	72.36	61.71
Merged-chr3-89164795-3	chr3	89164696	89164896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	1.0	NM_001163432	12748.0	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	107.01	110.92	94.13	104.57	94.5	114.45	67.76	98.47	115.85	144.61	163.81	95.86
Merged-chr10-56793237-3	chr10	56793140	56793340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	361259.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	88.43	88.54	117.51	129.91	129.28	164.63	118.59	147.39	130.21	114.48	159.29	83.64
Merged-chr9-99165027-3	chr9	99164944	99165144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24833.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	26.25	14.84	31.38	28.96	22.5	13.17	18.6	27.64	27.73	22.59	27.64	18.48
Merged-chr5-31512681-3	chr5	31512589	31512789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133756, exon 14 of 14)	3' UTR (NM_133756, exon 14 of 14)	14073.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	20.59	19.62	21.68	25.34	31.09	22.89	15.61	18.84	28.91	29.12	20.6	16.29
Merged-chr4-108071477-3	chr4	108071381	108071581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 11 of 15)	intron (NM_011327, intron 11 of 15)	-15876.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	83.59	71.94	86.71	66.77	72.82	85.29	71.42	95.27	99.72	88.87	116.58	47.62
Merged-chr2-37970175-3	chr2	37970108	37970308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	193959.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	15.75	19.37	12.55	17.7	26.59	40.76	27.24	29.38	23.41	22.09	27.13	15.04
Merged-chr15-73732677-3	chr15	73732624	73732824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7794.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	20.59	10.31	11.98	10.46	25.36	22.89	28.23	17.38	26.95	30.13	31.66	23.18
Merged-chr11-116005183-3	chr11	116005189	116005389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005608, intron 32 of 39)	intron (NM_001005608, intron 32 of 39)	7430.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	18.57	32.95	22.25	31.37	29.46	35.12	14.62	18.98	25.18	30.63	38.19	22.56
Merged-chr2-144369098-5	chr2	144369037	144369237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164813, exon 1 of 2)	exon (NM_001164813, exon 1 of 2)	102.0	NM_181417	228714.0	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	22.21	39.99	17.11	30.97	33.14	33.55	48.83	34.93	38.75	37.66	45.22	42.92
Merged-chr8-83141520-3	chr8	83141436	83141636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23816.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	54.92	52.82	37.08	62.74	71.59	80.27	48.83	58.79	46.62	46.19	42.71	31.95
Merged-chr9-105121376-3	chr9	105121282	105121482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10423.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	38.36	33.45	55.33	43.04	43.36	51.43	52.15	48.87	23.41	27.11	28.14	20.68
Merged-chr5-144768330-6	chr5	144768246	144768446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-446.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	13.33	19.62	7.42	7.64	16.36	17.56	11.29	7.93	13.18	12.55	18.09	16.6
Merged-chr1-85750405-1	chr1	85750305	85750505	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1543.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	5.25	1.01	4.56	3.62	3.27	4.7	6.98	9.14	3.74	2.51	6.53	2.19
Merged-chr7-67462099-3	chr7	67462033	67462233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89275.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	91.26	83.51	153.45	132.73	129.28	136.09	153.8	184.23	162.66	127.03	174.36	106.51
Merged-chr4-132794211-3	chr4	132794116	132794316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	2148.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	94.08	61.37	99.83	68.78	77.73	103.79	67.76	84.53	91.26	58.24	74.87	62.97
Merged-chr18-58136310-1	chr18	58136210	58136410	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010181, intron 7 of 64)	intron (NM_010181, intron 7 of 64)	73616.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.0	4.28	0.0	2.41	2.45	0.63	4.32	3.48	3.15	3.51	5.02	3.76
Merged-chr5-36465009-3	chr5	36464922	36465122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024478)	promoter-TSS (NM_024478)	-163.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	193.42	189.65	172.28	185.41	188.19	252.43	138.18	174.34	259.82	294.23	275.86	156.01
Merged-chr18-24142082-3	chr18	24141984	24142184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20265.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	27.46	17.36	19.4	37.4	14.32	16.62	13.29	24.93	23.41	17.07	27.13	19.11
Merged-chr16-91839614-3	chr16	91839521	91839721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 18 of 39)	exon (NM_010587, exon 18 of 39)	92009.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	39.57	56.59	58.19	45.05	44.18	73.06	61.12	73.04	83.59	88.37	93.96	38.53
Merged-chr17-32350672-3	chr17	32350556	32350756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017476)	promoter-TSS (NM_017476)	-79.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	146.58	150.67	156.88	139.16	164.46	171.21	110.28	156.14	183.71	156.66	196.47	98.99
Merged-chr13-92354899-6	chr13	92354773	92354973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	90.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	96.1	131.8	98.12	140.77	112.09	132.01	176.05	121.46	94.41	168.21	118.59	84.58
Merged-chr10-118812139-3	chr10	118812062	118812262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56741.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	29.88	21.13	34.8	53.89	38.86	25.4	36.21	35.69	34.22	41.17	48.24	28.19
Merged-chr10-89744993-3	chr10	89744884	89745084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-7.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	65.01	60.87	79.29	74.41	94.5	102.54	63.78	107.92	113.1	132.05	160.29	62.03
Merged-chr16-90830064-3	chr16	90829957	90830157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-802.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	29.07	20.88	38.79	32.18	42.55	31.98	31.89	38.64	51.34	32.13	68.34	33.21
Merged-chr5-90694661-3	chr5	90694564	90694764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54137.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	57.34	48.04	116.94	88.48	101.05	63.34	107.96	120.67	74.54	62.26	79.89	55.13
Merged-chr4-63558683-3	chr4	63558579	63558779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-84.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	75.91	88.79	45.64	61.54	76.09	75.57	79.06	96.51	80.25	86.36	80.9	53.88
Merged-chr7-110166383-3	chr7	110166294	110166494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44335.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	67.03	68.67	47.35	41.02	54.0	95.95	50.16	38.38	100.51	94.4	73.36	55.76
Merged-chr2-160731322-3	chr2	160731309	160731509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021280)	promoter-TSS (NM_021280)	99.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	42.4	49.05	38.79	48.26	35.18	33.24	60.46	35.66	42.88	50.21	46.23	38.53
Merged-chr2-52925296-3	chr2	52925189	52925389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	67421.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	36.75	42.51	41.64	33.78	79.78	97.21	67.43	67.09	53.5	74.81	85.42	37.59
Merged-chr3-89773405-3	chr3	89773311	89773511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	-11.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	102.56	123.25	108.39	90.9	102.68	132.01	96.66	92.94	148.7	140.59	161.3	87.71
Merged-chr14-8132963-3	chr14	8132842	8133042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	34731.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	85.2	80.49	115.8	109.0	77.32	110.06	94.0	112.94	101.69	87.87	118.08	67.67
Merged-chr15-82127830-3	chr15	82127743	82127943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172428)	promoter-TSS (NM_172428)	-79.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	183.32	169.53	190.53	178.58	236.46	242.71	165.75	193.37	211.64	196.32	315.06	158.51
Merged-chr13-51323286-3	chr13	51323181	51323381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-85337.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	21.8	24.15	41.07	48.67	38.46	35.12	45.51	57.31	30.09	35.65	57.79	27.57
Merged-chr6-82764332-3	chr6	82764241	82764441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	10113.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	153.04	115.2	157.45	119.45	129.28	160.24	100.98	124.63	131.39	120.51	183.41	86.77
Merged-chr3-57732053-3	chr3	57731951	57732151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4006.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	20.19	14.09	31.95	37.4	25.77	31.98	26.24	41.36	35.99	24.1	43.21	20.68
Merged-chr15-31530557-1	chr15	31530457	31530657	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172606, intron 1 of 25)	CpG	480.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	11.71	16.35	7.99	16.89	14.73	17.56	9.3	15.22	15.74	13.05	14.07	15.35
Merged-chr8-105289562-3	chr8	105289478	105289678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-50.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	88.84	71.69	78.15	80.04	72.41	111.63	73.08	95.02	113.69	143.1	155.77	89.28
Merged-chr19-5689692-3	chr19	5689616	5689816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144868)	promoter-TSS (NM_144868)	585.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	99.33	117.72	91.84	60.33	102.28	148.95	52.82	54.76	110.15	111.97	89.94	62.34
Merged-chr19-58943534-3	chr19	58943402	58943602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	77.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	30.28	35.21	27.95	30.57	34.77	57.07	46.5	21.36	37.96	42.68	38.69	28.51
Merged-chr17-36135931-3	chr17	36135844	36136044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6519.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	16.15	11.57	20.54	23.33	51.14	51.43	34.55	46.65	37.17	8.54	22.11	16.92
Merged-chr5-146221453-2	chr5	146221363	146221563	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-6.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	27.05	17.1	21.68	12.07	24.14	23.52	15.28	19.65	43.66	26.11	52.76	17.54
Merged-chr4-43000579-3	chr4	43000465	43000665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-58.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	199.07	216.82	245.3	208.34	255.28	287.86	187.34	240.95	292.48	352.98	388.42	195.48
Merged-chr18-84807808-3	chr18	84807718	84807918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43520.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	102.97	121.49	122.08	128.3	112.5	144.56	94.34	118.91	138.08	109.46	165.32	92.41
Merged-chr4-150138275-3	chr4	150138165	150138365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-10707.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	22.21	18.36	19.4	14.88	22.91	40.45	20.26	25.07	54.29	39.67	33.67	27.88
Merged-chr13-112363346-3	chr13	112363243	112363443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 8 of 11)	intron (NM_001168403, intron 8 of 11)	74825.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	40.38	29.68	27.38	32.18	43.36	45.15	34.88	45.11	24.59	39.67	37.18	25.06
Merged-chr12-108914239-1	chr12	108914139	108914339	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	19967.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	2.02	0.0	4.56	10.46	19.64	21.32	12.95	16.26	7.67	9.04	9.04	6.27
Merged-chr13-9022813-3	chr13	9022700	9022900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26788.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	36.34	25.4	32.52	39.82	53.18	57.07	25.58	57.65	75.33	53.22	69.85	48.24
Merged-chr4-16082394-3	chr4	16082303	16082503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-68515.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	18.98	13.33	19.97	20.51	24.55	25.71	27.24	35.66	29.11	25.61	20.1	11.9
Merged-chr16-91870381-3	chr16	91870282	91870482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	61248.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	79.55	82.25	94.13	92.1	81.82	131.7	60.12	81.59	132.76	117.49	95.97	57.95
Merged-chr2-118976510-3	chr2	118976426	118976626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	50029.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	37.15	45.53	26.81	45.85	29.86	49.54	32.22	36.5	25.96	23.6	26.63	27.25
Merged-chr7-114292732-3	chr7	114292680	114292880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16664.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	22.61	36.47	45.64	52.69	33.14	31.67	52.48	33.76	34.62	40.67	61.81	30.7
Merged-chr1-189657586-1	chr1	189657486	189657686	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	30500.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	2.42	3.27	6.85	1.61	4.09	1.88	8.3	10.12	1.18	0.0	2.01	0.63
Merged-chr11-77801425-3	chr11	77801335	77801535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	137.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	41.59	34.46	58.76	25.74	45.41	61.77	46.84	47.5	49.76	37.16	35.17	25.37
Merged-chr11-59534905-3	chr11	59534820	59535020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-6649.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	24.23	12.32	7.99	17.29	26.59	22.58	11.63	14.5	31.86	18.08	21.61	16.6
Merged-chr11-3146139-1	chr11	3146039	3146239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030207, intron 15 of 32)	intron (NM_030207, intron 15 of 32)	22118.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	22.21	25.4	12.55	26.95	38.46	26.34	29.23	36.31	0.59	0.5	0.0	0.0
Merged-chr11-119227671-3	chr11	119227567	119227767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175430)	promoter-TSS (NM_175430)	832.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	20.19	25.15	42.21	33.78	28.64	36.37	10.96	22.65	25.57	20.08	37.69	15.66
Merged-chr7-30195115-3	chr7	30195020	30195220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009795)	promoter-TSS (NM_009795)	33.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	61.38	58.1	79.86	49.87	94.09	91.25	57.8	69.17	105.82	104.44	126.63	47.62
Merged-chr7-45458288-4	chr7	45458243	45458443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010240, intron 3 of 3)	intron (NM_010240, intron 3 of 3)	1543.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	27.46	18.11	11.41	19.31	20.46	21.64	9.63	11.72	26.95	28.62	39.7	29.76
Merged-chr12-108758084-3	chr12	108757998	108758198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35213.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	146.17	146.64	145.47	150.02	205.37	202.25	125.23	156.79	170.53	180.76	228.63	113.4
Merged-chr17-57104536-1	chr17	57104436	57104636	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-849.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	2.42	9.06	0.0	3.22	6.14	8.15	0.33	0.93	24.19	33.64	4.02	5.01
Merged-chr11-3158978-2	chr11	3158886	3159086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 10 of 32)	B3|SINE|B2	34477.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	18.57	19.87	5.7	14.88	16.77	15.37	32.55	16.07	0.2	3.01	2.01	0.63
Merged-chr10-122986254-3	chr10	122986149	122986349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029527)	promoter-TSS (NR_029527)	-525.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	30.28	40.5	73.59	47.86	33.96	43.27	54.81	39.14	42.68	58.75	57.79	39.16
Merged-chr4-154935190-3	chr4	154935111	154935311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7134.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	64.2	54.58	71.31	68.37	65.87	89.05	51.82	71.24	94.8	103.94	73.36	88.65
Merged-chr12-110737900-3	chr12	110737804	110738004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027149)	promoter-TSS (NM_027149)	7.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	87.22	69.42	88.42	58.32	101.87	99.09	73.41	73.99	97.95	111.47	94.47	67.98
Merged-chr11-64496250-3	chr11	64496163	64496363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-59589.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	40.38	43.51	75.87	70.38	18.41	10.66	20.59	22.96	61.17	33.64	45.22	31.64
Merged-chr10-62261322-3	chr10	62261211	62261411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009314, exon 3 of 5)	exon (NM_009314, exon 3 of 5)	8873.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	27.05	30.69	25.1	14.08	29.86	55.5	22.59	25.51	33.83	28.12	42.71	21.62
Merged-chr9-13671365-3	chr9	13671257	13671457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	8897.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	30.28	26.66	44.5	46.66	34.77	30.42	40.52	53.66	30.29	20.08	39.7	16.92
Merged-chr6-30391000-3	chr6	30390892	30391092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311086)	promoter-TSS (NM_001311086)	28.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	17.77	25.66	25.1	31.37	33.55	31.67	17.94	21.06	26.16	24.6	24.62	16.92
Merged-chr18-69416292-3	chr18	69416195	69416395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	70135.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	44.42	31.69	45.64	56.31	46.23	50.8	47.5	51.31	52.91	50.71	39.19	31.64
Merged-chr10-34244909-3	chr10	34244809	34245009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37281.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	55.32	33.2	45.64	78.03	66.68	75.88	90.68	90.51	66.09	64.27	98.49	40.1
Merged-chr2-129360311-3	chr2	129360219	129360419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9583.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	63.8	45.02	50.77	64.75	63.82	63.03	51.15	64.46	60.97	46.19	50.75	33.83
Merged-chr4-70412262-3	chr4	70412222	70412422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1887.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	104.58	86.78	101.54	129.11	129.28	97.21	92.01	139.23	152.24	135.07	187.43	119.67
Merged-chr9-119334508-3	chr9	119334397	119334597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5543.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	41.99	25.66	54.19	55.91	38.86	36.06	34.55	49.29	47.01	54.73	76.38	45.74
Merged-chr12-56345879-3	chr12	56345772	56345972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145442)	promoter-TSS (NM_145442)	22.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	77.53	66.15	81.0	72.4	90.41	114.77	67.1	101.13	140.63	155.15	126.63	71.11
Merged-chr1-58724301-3	chr1	58724206	58724406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6246.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	70.66	91.56	61.04	39.42	56.05	111.63	54.14	45.87	77.5	98.91	44.22	25.37
Merged-chr10-96618454-3	chr10	96618367	96618567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007569, exon 2 of 2)	exon (NM_007569, exon 2 of 2)	1466.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	36.34	42.26	50.77	37.0	40.91	36.06	48.16	31.07	44.06	36.15	87.43	31.33
Merged-chr10-108162054-3	chr10	108161966	108162166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027892)	promoter-TSS (NM_027892)	-334.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	163.54	132.05	172.28	143.99	157.5	161.49	141.5	193.74	221.27	217.91	310.53	171.36
Merged-chr6-125331164-3	chr6	125331070	125331270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011324, exon 2 of 12)	exon (NM_011324, exon 2 of 12)	9830.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	73.49	67.41	57.05	45.45	92.87	66.48	47.17	52.26	84.77	122.51	125.12	55.45
Merged-chr11-119300118-3	chr11	119300010	119300210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-67.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	94.08	101.11	69.6	69.18	83.46	81.53	40.52	39.67	111.72	119.0	98.49	60.15
Merged-chr18-61132151-3	chr18	61132036	61132236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037859)	TTS (NM_001037859)	14668.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	23.42	26.66	37.08	24.53	53.59	22.89	32.88	30.06	29.9	50.21	40.7	25.06
Merged-chr12-106031807-3	chr12	106031700	106031900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	21537.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	30.28	16.1	31.95	24.13	26.18	31.04	22.26	33.31	46.42	30.63	30.65	23.18
Merged-chr18-24653831-3	chr18	24653726	24653926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026779, exon 1 of 15)	5' UTR (NM_026779, exon 1 of 15)	135.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	37.15	30.43	37.65	47.46	58.5	52.05	47.83	71.22	59.79	79.33	118.08	53.57
Merged-chr4-46304944-3	chr4	46304836	46305036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-39258.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	35.13	27.42	45.64	26.95	35.59	41.08	24.25	39.2	32.65	34.65	40.2	28.51
Merged-chr6-50385686-3	chr6	50385582	50385782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-2845.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	24.63	38.74	37.08	30.57	24.55	24.15	21.92	21.93	33.83	57.24	55.27	16.29
Merged-chr1-82283285-3	chr1	82283209	82283409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010570, intron 1 of 1)	CpG	8130.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	24.23	44.27	35.37	68.37	51.55	52.68	64.77	57.25	37.96	51.72	68.34	37.59
Merged-chr17-43573860-3	chr17	43573774	43573974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	5423.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	92.87	57.6	90.7	103.77	94.5	108.5	109.95	106.6	120.37	112.47	107.03	59.52
Merged-chr9-90060100-3	chr9	90060017	90060217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	5850.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	59.36	32.45	50.2	48.67	46.23	42.96	32.55	49.79	53.11	49.21	58.79	25.37
Merged-chr10-66954317-3	chr10	66954167	66954367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33883.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	39.98	28.17	51.34	65.56	39.68	37.0	70.75	65.36	61.96	39.67	102.0	41.98
Merged-chr3-32397667-3	chr3	32397615	32397815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-32050.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	20.19	22.39	17.68	15.69	20.86	23.2	25.91	26.44	19.28	25.11	22.11	20.99
Merged-chr5-104508437-3	chr5	104508357	104508557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166581, exon 1 of 2)	5' UTR (NM_001166581, exon 1 of 2)	105.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	19.79	25.15	24.53	18.5	18.41	14.11	29.23	26.52	24.19	36.65	29.14	13.47
Merged-chrY-1286586-3	chrY	1286490	1286690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012008)	promoter-TSS (NM_012008)	23.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	90.85	62.88	76.44	49.07	74.87	88.74	54.81	74.38	103.06	64.77	88.94	47.62
Merged-chr14-66872766-3	chr14	66872673	66872873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3923.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	70.66	49.8	92.41	95.72	74.46	74.63	59.13	95.13	72.18	52.22	97.98	51.69
Merged-chr17-24850383-3	chr17	24850274	24850474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024284)	promoter-TSS (NM_024284)	-72.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	151.42	134.82	164.29	166.51	160.78	164.94	111.61	147.65	149.88	173.23	167.33	120.92
Merged-chr6-54992975-3	chr6	54992879	54993079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026637)	promoter-TSS (NM_026637)	-112.0	NM_026637	110175.0	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	252.37	266.12	304.62	255.8	324.01	312.0	268.73	330.37	318.24	344.95	413.04	177.31
Merged-chr14-70074935-3	chr14	70074836	70075036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2509.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	153.04	189.65	180.26	171.34	106.37	170.58	76.73	123.81	259.63	302.77	293.45	182.32
Merged-chr6-124809629-3	chr6	124809515	124809715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009415)	TTS (NM_009415)	697.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	32.3	34.46	34.23	23.33	29.86	45.47	16.28	36.14	52.12	59.75	57.79	43.23
Merged-chr2-27426725-1	chr2	27426625	27426825	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	883.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	18.98	11.82	6.28	17.7	12.68	17.87	11.63	12.42	13.37	21.59	16.08	14.41
Merged-chr4-19895342-3	chr4	19895238	19895438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27228.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	65.82	57.85	68.45	78.83	90.41	83.72	63.44	106.37	105.82	89.88	120.09	52.0
Merged-chr4-33310276-3	chr4	33310234	33310434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	23.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	88.84	85.02	59.9	85.27	76.09	98.78	73.74	84.9	118.41	109.46	118.59	92.41
Merged-chr4-128655119-1	chr4	128655019	128655219	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	CpG	417.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	10.5	10.82	6.28	12.47	11.45	10.35	8.97	11.92	8.06	8.03	11.56	7.83
Merged-chr8-66444383-3	chr8	66444298	66444498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	42132.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	14.94	16.6	25.67	32.98	48.27	22.89	28.23	43.93	21.24	21.59	39.19	18.17
Merged-chr3-103378272-3	chr3	103378174	103378374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	98981.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	92.87	65.15	82.15	94.92	58.91	85.29	67.1	68.38	140.83	128.04	218.08	92.41
Merged-chr8-123477948-3	chr8	123477855	123478055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	93.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	59.36	64.64	51.91	52.69	51.96	46.72	49.83	36.45	53.5	58.75	53.26	43.86
Merged-chr4-135942385-3	chr4	135942306	135942506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4042.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	35.94	25.15	28.52	26.55	63.41	88.74	49.49	62.22	57.24	71.8	47.74	37.91
Merged-chr10-34307271-3	chr10	34307175	34307375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176968, intron 11 of 11)	intron (NM_176968, intron 11 of 11)	9854.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	16.15	18.36	19.4	23.33	20.05	30.1	12.62	27.48	28.13	59.75	31.15	21.93
Merged-chr1-171503529-3	chr1	171503434	171503634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	56.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	64.61	73.19	66.17	50.27	47.05	68.67	39.2	42.14	68.45	73.81	71.35	35.71
Merged-chr16-4420516-3	chr16	4420421	4420621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291910)	promoter-TSS (NM_001291910)	-23.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	41.59	26.16	29.09	26.95	51.55	49.86	28.57	53.89	54.68	51.21	79.89	29.13
Merged-chr13-23621203-3	chr13	23621094	23621294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-70.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	77.93	55.84	59.33	75.61	71.18	85.29	43.85	97.74	102.47	86.36	139.19	73.93
Merged-chr10-30803156-3	chr10	30803006	30803206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001358841, exon 1 of 16)	5' UTR (NM_001358841, exon 1 of 16)	220.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	38.36	35.72	34.23	36.6	51.96	40.76	39.86	45.65	53.7	58.24	61.81	58.89
Merged-chr18-82825707-3	chr18	82825610	82825810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30187.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	41.59	39.49	73.02	55.5	66.68	47.04	83.71	68.47	87.53	60.75	151.75	59.83
Merged-chr4-45342062-3	chr4	45341906	45342106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153167)	promoter-TSS (NM_153167)	-95.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	47.24	59.61	92.98	58.72	77.32	76.83	48.5	74.05	54.88	56.24	92.96	44.8
Merged-chr4-128661335-3	chr4	128661248	128661448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6646.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	32.71	20.12	42.78	34.99	27.0	34.18	28.23	43.82	34.81	40.17	47.74	18.48
Merged-chr6-125009706-3	chr6	125009629	125009829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	60.0	NM_175557	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	46.44	47.54	45.64	47.86	41.73	64.91	38.53	39.5	61.76	45.19	65.83	38.85
Merged-chr6-39007380-3	chr6	39007283	39007483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	L2c|LINE|L2	60203.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	33.92	33.7	49.06	63.15	36.41	41.39	25.91	58.63	48.98	51.72	80.4	46.36
Merged-chr11-34771389-3	chr11	34771285	34771485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12520.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	27.86	45.02	33.09	39.42	48.27	58.32	27.24	49.49	38.35	46.7	50.75	24.43
Merged-chr2-103008358-3	chr2	103008262	103008462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65151.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	67.03	56.34	67.88	55.91	76.91	83.1	33.88	66.08	57.63	62.76	86.93	52.0
Merged-chr2-122581902-3	chr2	122581824	122582024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	29353.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	37.15	16.35	40.5	40.62	26.59	22.26	58.79	51.42	22.82	21.09	22.11	18.48
Merged-chr12-35047117-3	chr12	35047017	35047217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-72.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	62.18	68.67	39.36	77.62	56.05	74.63	50.82	74.24	118.41	81.34	119.59	59.21
Merged-chr6-85587522-3	chr6	85587373	85587573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145223)	promoter-TSS (NM_145223)	-58.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	40.78	36.72	57.05	67.57	38.86	68.36	33.55	52.04	75.53	66.28	83.91	40.41
Merged-chr11-46062039-3	chr11	46061945	46062145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	6061.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	39.57	57.6	78.15	57.92	45.0	50.17	32.55	41.69	59.4	55.23	61.81	37.59
Merged-chr9-90208871-3	chr9	90208776	90208976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 11 of 12)	L1ME4b|LINE|L1	45898.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	12.92	21.13	9.13	4.83	22.91	23.2	23.25	13.46	39.53	34.14	34.17	10.02
Merged-chr7-29768472-3	chr7	29768367	29768567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-85.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	119.52	133.31	108.39	84.46	123.14	160.55	96.0	82.63	147.12	155.65	142.71	87.71
Merged-chr19-47068495-3	chr19	47068371	47068571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177342, intron 1 of 10)	CpG	723.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	49.67	40.75	45.07	47.46	74.87	64.28	30.56	51.22	67.07	55.73	68.84	33.52
Merged-chr10-10449263-3	chr10	10449187	10449387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	23027.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	48.05	35.21	35.94	16.49	72.82	76.2	40.86	48.84	66.09	72.81	80.4	45.42
Merged-chr1-131911065-3	chr1	131910968	131911168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 1 of 6)	CpG	610.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	31.09	47.04	29.66	42.23	38.86	66.48	44.51	45.9	57.24	38.66	64.82	27.25
Merged-chr8-22807997-3	chr8	22807899	22808099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2345.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	53.7	53.32	53.62	74.0	57.68	59.27	33.55	45.7	56.25	62.76	78.89	40.41
Merged-chr19-32757517-3	chr19	32757422	32757622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008960)	promoter-TSS (NM_008960)	-55.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	173.23	195.19	159.73	192.65	177.14	181.56	132.2	140.94	191.97	193.81	197.48	96.8
Merged-chr10-43479974-3	chr10	43479873	43480073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199028, intron 1 of 3)	CpG	833.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	136.89	162.49	129.49	129.51	148.1	199.75	136.85	157.43	139.06	136.07	166.32	86.77
Merged-chr10-128821775-3	chr10	128821685	128821885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153109)	promoter-TSS (NR_153109)	21.0	NR_153109	66118.0	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	242.68	232.41	256.14	236.49	254.87	305.73	206.28	249.14	288.34	317.83	327.12	199.86
Merged-chr12-112867500-3	chr12	112867400	112867600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6584.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	54.92	61.37	58.19	37.81	68.73	113.51	36.21	31.01	85.17	63.77	67.84	20.68
Merged-chr5-139024653-3	chr5	139024558	139024758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29705.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	115.49	82.5	108.96	114.63	100.23	124.8	115.93	125.86	126.67	137.07	125.62	82.39
Merged-chr19-5408690-4	chr19	5408512	5408712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027938, intron 1 of 3)	L2|LINE|L2	1797.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	37.15	24.15	31.38	26.14	33.96	37.94	26.57	27.76	48.58	45.19	40.7	38.85
Merged-chr16-50432379-3	chr16	50432289	50432489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	0.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	86.41	99.1	89.56	102.96	108.82	105.36	67.43	110.27	103.26	94.4	99.99	79.57
Merged-chr16-21695413-3	chr16	21695307	21695507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-742.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.27	9.06	18.25	18.9	23.32	29.48	38.2	21.53	24.39	33.14	29.65	13.16
Merged-chr5-64092969-3	chr5	64092859	64093059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356964)	promoter-TSS (NM_001356964)	20.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	46.44	51.06	52.48	45.05	38.46	45.15	44.51	40.29	31.86	32.13	49.24	22.56
Merged-chr10-13967487-3	chr10	13967358	13967558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	1079.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	43.61	29.18	37.65	22.93	54.82	54.25	46.84	48.28	59.99	47.7	57.28	29.45
Merged-chr11-70015376-3	chr11	70015266	70015466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017366)	promoter-TSS (NM_017366)	62.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	32.71	16.6	9.13	16.09	19.23	28.22	15.28	15.84	22.62	27.62	29.65	10.96
Merged-chr3-103967991-3	chr3	103967913	103968113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163467)	promoter-TSS (NM_001163467)	-97.0	NM_001163467	18685.0	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	27.05	27.42	29.66	24.53	18.0	31.67	20.26	18.64	35.4	17.57	36.18	15.98
Merged-chrX-164076380-3	chrX	164076324	164076524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308385)	promoter-TSS (NM_001308385)	69.0	NM_001308385	20438.0	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	siah E3 ubiquitin protein ligase 1B	protein-coding	54.11	62.38	27.95	48.67	47.46	75.57	58.13	48.56	52.12	84.86	80.4	46.36
Merged-chr13-74808726-3	chr13	74808627	74808827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	33.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	23.82	21.13	15.4	32.18	22.5	13.8	38.86	29.02	23.01	28.12	33.67	23.81
Merged-chr8-123065451-3	chr8	123065360	123065560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-48.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	86.01	76.72	70.74	53.09	108.41	90.94	49.16	72.06	93.23	107.45	119.59	66.1
Merged-chr2-48689281-3	chr2	48689172	48689372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124837.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	20.19	22.64	29.09	31.77	28.23	37.0	22.59	28.6	35.01	22.59	32.66	22.56
Merged-chr16-94570805-3	chr16	94570709	94570909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113389)	promoter-TSS (NM_001113389)	-98.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	21.0	23.64	31.38	40.62	27.0	30.73	33.88	34.6	47.8	51.21	45.73	35.4
Merged-chr6-31125732-3	chr6	31125581	31125781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-62588.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	17.77	18.36	27.95	9.65	25.36	37.32	13.29	17.1	20.06	16.57	27.64	16.92
Merged-chr18-34989486-3	chr18	34989374	34989574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35123.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	21.0	13.58	31.95	16.09	24.14	30.1	14.28	40.79	28.52	17.57	29.65	20.36
Merged-chr2-59960319-3	chr2	59960219	59960419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 9 of 35)	intron (NM_001001182, intron 9 of 35)	-77713.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	27.86	27.42	37.08	20.51	27.0	25.09	21.59	37.63	28.52	19.58	39.7	23.81
Merged-chr5-23844152-3	chr5	23844072	23844272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-27.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	102.97	110.42	106.1	111.41	103.09	121.98	53.48	107.55	165.22	163.18	183.41	98.68
Merged-chr11-97435253-3	chr11	97435142	97435342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14918.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	104.58	106.4	103.25	84.06	128.46	141.73	90.35	102.62	130.01	139.59	147.73	90.53
Merged-chr7-43670292-3	chr7	43670179	43670379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	122.35	91.81	105.53	106.58	138.69	164.0	125.56	83.58	149.29	155.15	181.4	102.12
Merged-chr15-53409404-3	chr15	53409311	53409511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63228.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	19.38	15.85	22.82	26.14	34.36	29.48	16.61	33.79	43.07	24.6	44.72	14.41
Merged-chr6-29271179-3	chr6	29271076	29271276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1312.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	161.92	167.01	184.83	150.42	210.69	234.55	166.42	200.08	210.85	246.53	233.15	132.2
Merged-chr14-21032315-3	chr14	21032204	21032404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009502, exon 21 of 21)	3' UTR (NM_009502, exon 21 of 21)	20138.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	152.23	132.56	155.73	165.71	171.41	211.03	140.84	168.48	179.97	185.28	188.43	92.73
Merged-chr9-77924005-3	chr9	77923903	77924103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	6638.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	91.26	62.63	80.43	74.81	90.0	74.63	35.54	67.49	88.71	64.27	99.49	55.45
Merged-chr19-12859342-1	chr19	12859242	12859442	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2435.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	1.21	2.52	1.14	0.8	0.82	3.45	8.97	11.07	5.31	1.51	1.51	5.64
Merged-chr1-106369544-3	chr1	106369443	106369643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	MTEb|LTR|ERVL-MaLR	177088.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	21.0	16.85	54.19	55.1	33.55	19.44	45.84	47.64	38.94	19.58	47.74	20.05
Merged-chr17-84057280-3	chr17	84057184	84057384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21376.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	112.26	119.48	164.29	176.57	142.37	157.1	114.93	165.79	172.1	172.72	212.05	109.33
Merged-chr2-144264910-3	chr2	144264799	144264999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1303.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	36.75	26.16	45.07	37.0	45.0	35.43	23.25	55.35	36.78	28.62	48.24	26.94
Merged-chr17-65718782-3	chr17	65718676	65718876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 2 of 6)	MTC|LTR|ERVL-MaLR	53976.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	20.59	14.09	25.1	18.5	31.91	28.54	19.93	29.94	39.93	28.12	39.19	21.3
Merged-chr12-86242809-3	chr12	86242705	86242905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	947.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	28.67	39.49	39.93	23.33	40.09	61.15	23.58	28.77	51.14	44.19	35.68	33.52
Merged-chr6-134898359-3	chr6	134898294	134898494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-200.0	NM_001362051	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	81.57	76.97	67.31	66.77	56.46	69.93	53.48	58.74	83.0	72.81	72.36	65.79
Merged-chr7-81523491-3	chr7	81523372	81523572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045299)	promoter-TSS (NR_045299)	-78.0	NR_045299	100504421.0	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	50.88	32.95	55.9	48.26	48.27	54.56	30.56	39.14	79.66	58.75	80.9	46.99
Merged-chr13-47232342-3	chr13	47232226	47232426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	38323.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	140.12	117.72	101.54	126.29	116.19	131.07	114.27	118.21	135.91	115.99	84.42	61.4
Merged-chr18-82913278-3	chr18	82913175	82913375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	-1357.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	79.14	85.77	98.69	100.15	81.41	88.43	62.12	72.56	119.39	142.6	149.24	83.96
Merged-chr1-92981300-1	chr1	92981200	92981400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	2397.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	1.21	1.01	1.14	1.61	3.68	4.39	10.3	15.03	2.75	2.51	4.52	4.07
Merged-chr11-69914097-3	chr11	69914020	69914220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357906)	promoter-TSS (NM_001357906)	86.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	52.9	58.86	40.5	41.43	59.32	48.92	41.19	30.93	56.45	58.24	35.17	35.71
Merged-chr14-99099792-3	chr14	99099692	99099892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	-22.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	165.15	139.35	142.04	148.81	234.83	202.88	96.33	190.54	223.44	193.81	319.08	133.14
Merged-chr11-69008496-3	chr11	69008373	69008573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159519)	promoter-TSS (NM_001159519)	-13.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	40.78	25.15	21.11	14.88	29.46	44.53	8.97	17.94	36.78	34.65	23.11	31.33
Merged-chr13-23887537-3	chr13	23887433	23887633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	17260.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	20.59	19.37	25.67	16.09	31.5	16.93	15.94	15.73	34.81	31.63	32.66	20.36
Merged-chr1-59316184-3	chr1	59316068	59316268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59262.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	46.03	29.93	29.09	26.55	34.77	33.24	30.89	46.74	30.09	30.13	26.63	31.64
Merged-chr18-80200660-3	chr18	80200582	80200782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-63.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	81.57	51.31	42.78	48.26	85.91	86.23	49.49	71.3	121.36	131.55	175.37	78.63
Merged-chr2-160067010-1	chr2	160066910	160067110	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50357.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	10.9	2.01	3.42	4.42	11.05	16.31	15.94	25.04	1.38	1.0	1.0	0.63
Merged-chr1-60865341-3	chr1	60865245	60865445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-43680.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	18.17	20.37	25.1	17.29	26.59	39.82	27.24	21.87	33.04	26.11	34.67	21.62
Merged-chr9-20892174-3	chr9	20892084	20892284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145610)	TTS (NM_145610)	4009.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	40.78	66.15	96.41	73.6	45.82	68.36	55.14	47.75	119.0	85.86	131.65	79.88
Merged-chr5-138161059-3	chr5	138160978	138161178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-24.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	31.5	19.37	26.81	16.89	35.18	23.52	17.27	19.93	45.43	26.61	49.24	14.41
Merged-chr4-123050930-3	chr4	123050837	123051037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151450, intron 8 of 9)	intron (NR_151450, intron 8 of 9)	34344.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	24.23	24.65	25.1	25.74	21.68	26.65	16.61	16.99	30.29	26.11	30.65	23.81
Merged-chr7-27198588-3	chr7	27198471	27198671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290513, intron 2 of 7)	PB1D7|SINE|Alu	-2300.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	76.32	63.13	90.7	94.52	67.09	93.44	73.41	84.31	86.74	99.42	112.56	49.81
Merged-chr19-4201692-3	chr19	4201611	4201811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-108.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	38.36	38.99	28.52	34.99	31.91	34.49	22.59	25.18	38.94	32.64	38.69	17.54
Merged-chr9-106170911-3	chr9	106170812	106171012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029896)	promoter-TSS (NM_029896)	-17.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	57.34	66.91	73.02	53.49	62.18	81.53	28.57	61.63	94.02	85.86	97.48	63.59
Merged-chr16-17508885-3	chr16	17508784	17508984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331226)	promoter-TSS (NM_001331226)	201.0	NM_025808	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	35.13	32.7	56.48	52.69	51.14	59.27	31.22	44.78	50.16	84.35	77.88	36.34
Merged-chr10-19170818-3	chr10	19170722	19170922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	3584.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	51.28	50.05	55.9	76.42	55.23	47.98	45.84	65.24	57.04	48.7	60.3	34.15
Merged-chr9-108991781-3	chr9	108991673	108991873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-129.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	208.76	185.12	231.03	164.1	177.96	209.15	143.83	164.86	192.75	227.45	272.85	131.26
Merged-chr17-15657511-3	chr17	15657419	15657619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	25731.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	73.89	44.52	32.52	59.12	62.18	62.71	45.51	70.37	54.88	57.24	67.33	40.1
Merged-chr2-6723814-3	chr2	6723729	6723929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-2167.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	96.91	105.89	126.07	127.5	99.0	106.3	93.34	116.78	93.82	91.89	139.69	84.58
Merged-chr3-121291707-3	chr3	121291609	121291809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-31.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	145.37	141.11	155.16	198.69	180.01	196.3	132.87	217.26	226.58	228.96	310.03	141.91
Merged-chr5-99459372-3	chr5	99459260	99459460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206433.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	33.92	27.92	46.78	30.57	38.86	46.1	30.89	37.93	24.19	39.16	24.62	22.24
Merged-chr12-91779157-3	chr12	91778999	91779199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	CpG	7337.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	40.78	54.33	40.5	54.7	62.59	64.6	45.51	52.07	70.81	73.81	90.45	54.82
Merged-chr8-46941466-3	chr8	46941373	46941573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45414.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	114.27	97.59	134.06	100.95	101.46	141.73	94.0	130.21	130.8	148.62	184.91	87.71
Merged-chr3-50382922-2	chr3	50382817	50383017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011990, intron 7 of 11)	intron (NM_011990, intron 7 of 11)	60696.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	5.65	14.09	22.82	19.71	31.5	25.71	21.26	32.36	2.95	0.5	6.03	6.89
Merged-chr5-143475566-5	chr5	143475373	143475573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 4 of 14)	intron (NM_144915, intron 4 of 14)	10980.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	31.5	35.47	45.64	25.74	48.68	61.15	53.15	42.98	41.11	36.15	42.21	36.34
Merged-chr5-122400847-3	chr5	122400741	122400941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8963.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	20.59	12.32	62.75	24.13	50.73	39.2	38.53	35.24	53.11	37.66	76.88	42.92
Merged-chr18-83828157-1	chr18	83828057	83828257	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	258405.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	16.96	18.36	19.97	14.88	24.14	26.34	9.63	11.5	21.05	18.58	27.13	11.28
Merged-chr14-50834157-3	chr14	50834095	50834295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 41 of 54)	intron (NM_009351, intron 41 of 54)	26279.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	104.99	127.27	170.0	143.59	176.73	156.47	138.18	177.84	237.4	206.87	286.42	138.46
Merged-chr10-40068885-3	chr10	40068789	40068989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43621.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	24.63	24.9	40.5	37.4	32.73	33.87	58.46	67.6	35.21	21.09	48.74	27.25
Merged-chr7-7299538-3	chr7	7299444	7299644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302386)	promoter-TSS (NM_001302386)	13.0	NM_001302387	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	98.53	101.87	85.0	78.03	77.32	88.11	46.84	40.74	98.54	92.89	114.06	65.47
Merged-chr11-116413142-3	chr11	116413059	116413259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-127.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	33.52	35.72	23.96	19.71	33.55	31.98	16.28	20.16	49.76	51.72	50.75	37.28
Merged-chr11-94322023-3	chr11	94321926	94322126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-63.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	41.99	45.28	22.82	35.39	33.96	43.59	23.25	32.3	66.48	49.21	62.31	36.65
Merged-chr1-34434952-3	chr1	34434842	34435042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1743.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	47.65	48.54	45.07	53.49	52.77	49.54	32.88	41.13	73.76	45.19	62.81	71.74
Merged-chr5-91962386-3	chr5	91962301	91962501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028429)	promoter-TSS (NR_028429)	155.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	57.74	46.53	63.32	59.53	62.59	75.88	73.74	78.28	72.38	74.31	115.07	52.94
Merged-chr2-105675424-3	chr2	105675235	105675435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013627)	promoter-TSS (NM_013627)	-409.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	12.52	7.55	0.57	12.07	11.86	6.27	10.96	11.1	2.95	4.52	15.58	8.77
Merged-chr10-54075794-3	chr10	54075694	54075894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038016)	promoter-TSS (NR_038016)	2.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	106.2	77.72	85.57	98.14	127.64	122.61	86.7	143.08	129.03	106.45	201.5	75.5
Merged-chr18-38993041-3	chr18	38992935	38993135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-110.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	186.15	163.74	180.26	191.85	208.23	210.41	165.42	252.28	200.62	164.19	328.62	119.98
Merged-chr17-24170900-3	chr17	24170814	24171014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1236.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	64.61	53.32	63.89	57.92	81.41	77.45	75.73	83.16	47.4	50.71	67.84	36.65
Merged-chr13-81133683-3	chr13	81133521	81133721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	169547.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	17.36	24.65	34.23	27.75	42.96	26.65	53.81	45.84	35.8	38.66	35.68	27.25
Merged-chr2-22799794-3	chr2	22799697	22799897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	25470.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	50.47	35.72	63.32	62.34	69.55	72.44	55.8	66.73	60.38	61.26	83.91	31.64
Merged-chr11-16999641-3	chr11	16999563	16999763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9055.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	40.78	34.96	28.52	32.18	44.59	55.19	46.84	56.27	42.29	55.23	48.74	27.25
Merged-chr9-15306207-3	chr9	15306100	15306300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027261)	promoter-TSS (NM_027261)	-14.0	NM_029248	75316.0	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	119.52	106.9	106.1	90.49	128.46	164.31	66.43	114.14	185.87	155.15	146.72	90.85
Merged-chrX-106131567-1	chrX	106131467	106131667	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11708.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	1.21	7.04	3.42	2.01	10.23	3.45	11.29	10.12	2.16	2.01	3.01	1.57
Merged-chr1-21070285-3	chr1	21070250	21070450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8875.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	14.13	13.33	23.39	17.29	24.96	21.64	14.28	18.98	14.95	13.56	25.63	11.59
Merged-chr6-149309597-3	chr6	149309482	149309682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	168.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	71.07	106.65	82.72	134.74	86.32	112.57	166.75	123.45	103.46	128.04	165.32	103.06
Merged-chr6-99241817-3	chr6	99241718	99241918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24697.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	96.51	92.56	100.97	76.82	98.59	141.42	102.31	140.36	119.78	97.41	157.28	73.62
Merged-chrX-12087112-3	chrX	12087011	12087211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-6558.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	45.23	67.16	32.52	24.94	47.46	91.88	53.81	29.44	62.15	57.24	56.78	21.93
Merged-chr15-59784438-3	chr15	59784347	59784547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	58.95	67.91	86.71	61.94	82.64	97.83	64.11	74.83	91.46	85.86	99.49	68.29
Merged-chr17-69179367-3	chr17	69179275	69179475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20019.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	24.23	11.32	29.09	18.9	36.41	27.91	29.56	22.21	45.63	27.62	35.68	17.54
Merged-chr1-64482307-3	chr1	64482240	64482440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-50464.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	36.75	29.43	36.51	42.23	32.73	30.1	32.88	30.87	44.65	32.64	47.74	23.81
Merged-chr6-30693803-3	chr6	30693719	30693919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031998)	promoter-TSS (NM_031998)	-70.0	NR_130775	83922.0	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	44.42	43.01	33.09	28.56	51.55	48.6	32.22	36.36	58.02	72.81	53.26	46.68
Merged-chr7-29953964-3	chr7	29953800	29954000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178384, exon 1 of 6)	5' UTR (NM_178384, exon 1 of 6)	165.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	20.19	19.62	13.12	24.53	22.91	37.94	24.58	27.53	17.7	24.1	40.7	23.81
Merged-chr13-46735450-3	chr13	46735349	46735549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7600.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	15.75	12.32	30.8	25.34	14.32	24.15	15.28	23.05	27.54	18.08	31.66	20.36
Merged-chr12-25142476-3	chr12	25142384	25142584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13310.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	39.57	48.04	51.91	60.33	60.55	40.76	32.88	46.77	31.67	23.1	30.65	21.3
Merged-chr7-45589321-3	chr7	45589209	45589409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009737, exon 11 of 11)	exon (NM_009737, exon 11 of 11)	-14133.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	102.97	94.32	107.25	94.11	146.87	173.72	124.9	139.99	163.25	171.72	220.09	95.86
Merged-chr1-128713060-3	chr1	128712962	128713162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120763.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	107.01	81.24	75.3	102.56	141.55	169.96	129.55	187.4	168.17	142.1	161.3	84.9
Merged-chr11-5757999-3	chr11	5757904	5758104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	RMER16_Mm|LTR|ERVK	-4146.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	28.67	22.64	35.94	35.39	36.41	33.55	29.23	35.69	26.55	31.13	41.2	22.87
Merged-chr7-141949680-3	chr7	141949575	141949775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276763)	promoter-TSS (NM_001276763)	-76.0	NM_001009930	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	58.15	45.28	39.36	59.53	52.37	59.27	33.88	54.42	56.45	42.68	59.29	30.7
Merged-chr5-123897502-3	chr5	123897403	123897603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9772.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	31.9	34.21	30.23	25.74	34.36	31.67	14.95	32.07	72.97	35.15	30.15	35.71
Merged-chrUn_JH584304-50560-1	chrUn_JH584304	50460	50660	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9129.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	26.36	40.17	31.15	25.06
Merged-chr6-97487930-3	chr6	97487832	97488032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-112.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	51.28	32.95	64.46	62.74	72.0	70.24	68.1	80.61	76.31	68.79	110.55	68.92
Merged-chr7-89481969-2	chr7	89481846	89482046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35640.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	16.15	21.38	12.55	18.5	21.27	26.34	48.83	18.5	5.11	2.51	4.52	12.22
Merged-chr10-63247681-3	chr10	63247592	63247792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	3895.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	32.71	22.64	31.95	20.11	25.36	38.88	31.89	39.17	43.47	39.16	51.25	28.19
Merged-chr15-76303852-3	chr15	76303763	76303963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153122, intron 10 of 26)	RLTR20C2_MM|LTR|ERVK	3382.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	60.57	37.48	63.89	108.19	88.78	94.39	63.11	80.33	109.95	112.47	120.6	66.1
Merged-chr11-3154324-2	chr11	3154212	3154412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 13 of 32)	ID4|SINE|ID	30291.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	26.65	18.61	13.12	24.13	27.0	38.88	21.26	23.19	2.56	4.52	1.0	2.19
Merged-chr16-91647785-3	chr16	91647692	91647892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-32.0	NM_019973	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	108.62	108.91	123.79	113.42	128.87	159.61	84.04	116.72	190.98	159.67	211.55	98.37
Merged-chr17-26497658-3	chr17	26497551	26497751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10821.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	114.68	93.82	76.44	69.98	134.19	132.64	86.36	83.05	92.64	127.53	97.48	55.45
Merged-chr5-8346569-3	chr5	8346474	8346674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	21586.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	51.69	39.99	32.52	67.57	61.37	45.15	40.19	57.79	70.02	59.75	58.29	40.41
Merged-chr15-101268673-1	chr15	101268573	101268773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1827.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	42.4	25.4	9.13	0.8	5.73	18.5	0.0	3.42	15.54	28.62	5.02	2.51
Merged-chr7-19225157-2	chr7	19225058	19225258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175668)	TTS (NM_175668)	-3231.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	44.01	25.15	37.65	51.08	61.77	86.86	70.09	56.58	2.56	1.51	6.03	2.51
Merged-chr3-105932728-3	chr3	105932641	105932841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033780)	promoter-TSS (NM_001033780)	-77.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	19.38	25.15	43.35	30.97	22.91	30.73	14.95	29.66	24.98	33.64	27.64	27.57
Merged-chr9-89199269-3	chr9	89199175	89199375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	2.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	58.55	55.59	50.2	46.25	58.91	79.96	40.19	21.76	65.69	67.78	83.41	26.31
Merged-chr2-153111519-3	chr2	153111424	153111624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	3056.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	73.49	75.21	65.6	36.2	70.77	122.29	65.77	46.07	88.71	89.37	88.44	43.86
Merged-chr7-16120025-3	chr7	16119892	16120092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133727, exon 1 of 12)	exon (NM_133727, exon 1 of 12)	116.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	40.38	31.19	17.68	27.35	18.41	35.75	19.93	23.05	39.14	61.76	47.23	28.51
Merged-chr11-114915228-3	chr11	114915119	114915319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19167.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	35.53	22.13	38.79	30.97	82.23	47.66	57.8	69.7	29.9	19.08	49.75	34.77
Merged-chr12-112668154-3	chr12	112668093	112668293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	6083.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	60.17	52.82	56.48	49.07	67.09	44.21	46.5	77.97	50.75	37.66	63.31	35.71
Merged-chr5-30888541-3	chr5	30888448	30888648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-304.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	25.84	19.87	23.96	20.11	29.46	24.77	10.3	19.43	29.31	31.13	30.65	16.92
Merged-chr5-29569091-3	chr5	29568985	29569185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-157.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	178.88	215.31	215.63	172.95	231.14	235.18	178.04	195.28	250.97	283.69	303.0	148.18
Merged-chr11-32542960-3	chr11	32542871	32543071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9705.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	57.74	44.77	74.16	93.31	114.14	103.17	108.62	124.21	92.64	78.33	115.07	42.92
Merged-chr11-97702605-3	chr11	97702495	97702695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-839.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	48.86	25.66	18.25	27.75	33.55	32.93	14.62	20.41	38.16	35.15	47.23	34.77
Merged-chr9-69439900-3	chr9	69439800	69440000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13783.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	39.98	33.2	50.2	31.77	42.55	42.02	46.5	46.09	39.53	21.59	64.82	27.25
Merged-chr18-89160040-3	chr18	89159930	89160130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37397.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	37.96	25.15	28.52	22.12	38.86	44.84	26.91	16.43	46.22	43.68	54.77	24.43
Merged-chr4-150008585-3	chr4	150008457	150008657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	466.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	42.8	36.47	32.52	51.48	42.55	56.44	35.21	33.25	51.53	80.34	77.38	37.91
Merged-chr6-38950530-3	chr6	38950410	38950610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31524.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	27.46	19.12	31.38	34.99	15.96	28.22	15.28	39.87	41.11	29.12	44.22	22.87
Merged-chr13-77135510-3	chr13	77135411	77135611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	-25.0	NM_001081353	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	18.57	18.36	25.1	32.98	36.82	20.07	22.59	63.31	38.16	40.67	77.38	43.86
Merged-chr1-105967760-3	chr1	105967657	105967857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	22525.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	26.65	19.37	42.21	19.71	16.36	41.08	13.95	37.21	33.44	42.18	21.1	20.99
Merged-chr11-107469069-3	chr11	107468989	107469189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	CpG	1631.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	68.24	48.04	108.39	47.86	93.68	85.61	130.54	96.28	145.94	110.97	171.85	70.48
Merged-chr14-31189535-3	chr14	31189417	31189617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17309.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	25.04	20.12	18.83	25.74	42.14	33.55	20.26	40.15	27.73	41.67	37.18	28.82
Merged-chr15-101262692-3	chr15	101262590	101262790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4156.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	70.66	35.21	71.88	67.57	107.59	86.86	88.36	106.32	121.55	92.39	165.82	75.18
Merged-chr2-71275484-3	chr2	71275342	71275542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63496.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	12.11	17.36	21.68	20.11	27.41	17.87	30.23	23.97	25.77	27.11	27.64	12.84
Merged-chr11-44518890-3	chr11	44518807	44519007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028862)	promoter-TSS (NM_028862)	-57.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	25.84	30.94	25.67	22.12	36.82	31.36	25.24	22.37	55.86	53.73	58.29	29.13
Merged-chr4-3678563-1	chr4	3678463	3678663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	CpG	442.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	23.82	31.19	44.5	20.11	19.64	42.65	21.26	17.19	39.93	56.74	63.82	29.45
Merged-chr8-120745449-3	chr8	120745340	120745540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6801.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	32.3	25.4	35.37	42.63	51.96	26.65	45.84	85.09	32.06	17.07	53.26	32.58
Merged-chr18-61176693-3	chr18	61176605	61176805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178277, exon 1 of 20)	5' UTR (NM_178277, exon 1 of 20)	344.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	23.82	18.61	21.11	20.91	25.36	23.83	27.57	20.8	21.05	24.6	29.65	15.35
Merged-chr4-137367933-3	chr4	137367832	137368032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10173.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	42.4	34.71	47.35	54.3	63.82	68.36	43.85	48.34	40.91	47.7	62.31	50.44
Merged-chr6-50306806-3	chr6	50306684	50306884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-45015.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	22.61	17.36	19.97	27.75	33.55	32.3	22.92	44.05	33.63	32.13	37.18	29.76
Merged-chr9-96544257-3	chr9	96544157	96544357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 23 of 23)	intron (NM_053268, intron 23 of 23)	-65582.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	44.01	49.3	54.19	35.39	40.5	65.85	40.86	59.22	61.56	64.77	87.43	36.03
Merged-chr7-88303692-3	chr7	88303592	88303792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	25607.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	64.2	34.96	45.07	43.04	59.32	53.62	62.45	76.82	32.85	30.13	24.12	18.8
Merged-chr16-55691250-3	chr16	55691152	55691352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130886.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	39.17	26.41	26.81	24.13	55.23	85.92	27.24	37.49	90.67	86.86	76.88	32.58
Merged-chr13-101905890-3	chr13	101905788	101905988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137671.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	27.05	21.88	67.88	31.77	40.09	32.93	62.12	48.28	31.86	28.62	48.74	28.82
Merged-chr5-30961516-5	chr5	30961416	30961616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-1189.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	11.31	18.61	7.99	12.87	11.45	13.48	9.63	10.21	14.95	13.05	6.03	23.81
Merged-chr1-120075641-3	chr1	120075540	120075740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1860.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	157.48	139.6	189.96	157.66	157.1	166.51	95.33	169.07	192.95	156.15	183.41	111.21
Merged-chr11-117782305-3	chr11	117782221	117782421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	24.0	NM_001195089	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	43.21	29.43	38.79	19.31	30.68	50.8	35.87	42.03	51.14	29.12	37.18	53.26
Merged-chr19-41369968-3	chr19	41369876	41370076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15094.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	25.44	22.89	18.83	37.0	24.55	28.54	25.91	31.85	24.78	18.08	30.15	20.05
Merged-chr12-59012057-3	chr12	59011931	59012131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-14.0	NM_001361956	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	225.72	252.79	237.88	266.26	310.92	327.68	253.11	326.78	338.89	328.38	448.72	210.52
Merged-chr3-88621138-3	chr3	88621028	88621228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	22.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	46.84	30.18	27.38	42.63	36.0	38.88	36.54	39.53	40.32	44.69	61.3	20.99
Merged-chr12-40569253-3	chr12	40569167	40569367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123214.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	34.73	21.13	26.81	25.74	60.55	58.01	44.51	51.79	41.7	75.32	60.3	26.0
Merged-chr4-33246168-3	chr4	33246062	33246262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033225, exon 2 of 2)	exon (NM_001033225, exon 2 of 2)	2625.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	27.05	18.11	32.52	25.74	30.68	34.18	55.14	49.88	62.74	37.66	97.98	28.82
Merged-chr4-149171689-3	chr4	149171576	149171776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4971.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	26.65	20.63	40.5	32.18	29.86	42.02	25.91	35.8	50.35	44.69	54.77	42.29
Merged-chr3-60472995-3	chr3	60472881	60473081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 1 of 9)	intron (NM_001253713, intron 1 of 9)	151.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	18.98	26.41	18.25	22.93	17.18	25.4	15.94	19.6	36.98	32.64	27.64	18.48
Merged-chr8-126596417-3	chr8	126596319	126596519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2983.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	205.94	206.5	199.66	194.66	210.28	238.0	185.68	198.28	231.5	241.51	291.44	190.78
Merged-chr1-58505023-3	chr1	58504920	58505120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271526)	promoter-TSS (NM_001271526)	89.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	75.51	81.24	81.58	87.28	96.55	101.6	56.14	114.84	104.83	108.45	142.2	77.06
Merged-chr6-125145192-3	chr6	125145095	125145295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302779)	promoter-TSS (NM_001302779)	-29.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	44.82	37.23	44.5	59.93	55.23	55.19	33.55	37.79	85.56	59.25	77.88	34.15
Merged-chr18-60526323-5	chr18	60526197	60526397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357462, exon 1 of 14)	exon (NM_001357462, exon 1 of 14)	143.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	50.07	55.84	51.91	71.59	58.09	66.16	55.47	56.19	77.1	96.4	77.88	72.05
Merged-chr8-13676654-3	chr8	13676557	13676757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	930.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	64.61	29.68	42.78	40.22	59.32	47.98	55.8	56.52	73.17	71.3	86.93	45.74
Merged-chr7-112299845-2	chr7	112299742	112299942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	-68466.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	16.15	20.63	23.96	16.89	20.86	24.15	21.92	25.68	4.72	3.51	5.02	2.82
Merged-chr11-83536581-3	chr11	83536480	83536680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6062.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	23.02	16.85	34.23	18.1	31.91	42.96	27.9	16.74	46.03	24.6	22.61	14.72
Merged-chr16-30676031-3	chr16	30675912	30676112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76289.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	17.36	13.58	16.54	26.95	24.55	23.2	13.29	26.55	35.21	26.61	44.72	23.81
Merged-chr3-135485572-3	chr3	135485462	135485662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027288)	promoter-TSS (NM_027288)	-49.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	38.36	23.39	23.96	30.16	50.32	52.68	35.54	60.56	48.58	52.22	84.42	31.33
Merged-chr17-29442255-3	chr17	29442173	29442373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48772.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	47.65	25.91	41.64	25.74	31.5	37.0	22.92	27.53	41.89	28.62	35.68	28.19
Merged-chr19-10801251-3	chr19	10801152	10801352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	28806.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	92.87	74.45	104.39	94.92	46.64	66.16	43.18	55.01	67.27	53.73	65.32	46.36
Merged-chr7-119720759-3	chr7	119720663	119720863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145585, exon 2 of 5)	5' UTR (NM_145585, exon 2 of 5)	2856.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	37.15	49.8	47.92	53.89	42.55	53.93	36.54	59.33	73.76	61.76	77.88	34.77
Merged-chr6-30337099-3	chr6	30337023	30337223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32584.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	41.99	50.56	62.75	44.64	43.36	52.37	30.23	66.34	57.24	41.17	54.77	46.36
Merged-chr12-110682063-1	chr12	110681963	110682163	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025488, intron 1 of 5)	intron (NM_025488, intron 1 of 5)	556.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	1.21	1.51	2.28	1.61	2.86	11.29	1.99	8.72	3.93	5.02	9.04	3.76
Merged-chr4-109419184-3	chr4	109419082	109419282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	3535.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	23.02	26.41	24.53	28.15	37.64	36.37	24.58	44.86	34.42	47.2	61.3	19.11
Merged-chr9-107289770-4	chr9	107289644	107289844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316691)	promoter-TSS (NM_001316691)	133.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	51.28	54.58	46.21	59.53	52.37	55.82	75.73	47.83	86.94	86.86	101.0	54.2
Merged-chr12-51938144-3	chr12	51938045	51938245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177171, exon 13 of 36)	exon (NM_177171, exon 13 of 36)	33176.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	98.93	69.42	70.74	100.95	70.37	80.9	74.07	114.17	72.58	52.22	118.59	52.32
Merged-chr13-10253233-3	chr13	10253157	10253357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	107546.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	45.23	32.45	65.03	73.6	35.18	53.93	58.46	89.08	58.42	60.75	82.91	60.77
Merged-chr13-23432738-3	chr13	23432629	23432829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1712.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	65.82	51.81	42.78	56.71	52.37	87.17	23.25	49.74	86.35	66.28	100.5	41.04
Merged-chr9-103234729-3	chr9	103234620	103234820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4434.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	26.25	21.13	45.07	32.98	49.5	45.78	46.17	63.39	39.73	68.29	41.2	41.66
Merged-chr18-57845284-3	chr18	57845169	57845369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33409.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	19.38	17.1	27.38	33.38	36.82	27.59	22.59	44.3	47.21	41.67	28.14	24.43
Merged-chr1-185224851-3	chr1	185224759	185224959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 2 of 34)	MT2A|LTR|ERVL	-18067.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	39.57	27.92	41.64	45.45	58.09	40.45	28.57	57.95	45.83	30.13	60.8	38.22
Merged-chr6-113341756-3	chr6	113341652	113341852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133926, intron 2 of 11)	intron (NM_133926, intron 2 of 11)	2170.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	54.92	41.5	76.44	59.12	70.77	36.06	36.54	80.86	54.09	40.67	74.37	36.97
Merged-chr14-34502757-3	chr14	34502671	34502871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-225.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	27.46	24.9	18.25	15.69	47.87	42.33	21.26	37.29	71.2	55.73	53.77	36.34
Merged-chr15-76715334-3	chr15	76715238	76715438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145471)	TTS (NM_145471)	4697.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	48.46	39.49	56.48	49.07	53.59	49.23	37.54	49.79	84.18	44.69	92.46	61.4
Merged-chr2-117404713-3	chr2	117404614	117404814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61837.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	31.09	27.67	23.96	29.76	20.46	29.79	29.9	28.51	35.01	35.15	39.19	13.47
Merged-chr5-17857980-1	chr5	17857880	17858080	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8188.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.23	5.79	4.56	4.42	7.36	8.78	11.29	8.47	8.06	7.53	5.53	5.01
Merged-chr1-85703523-1	chr1	85703423	85703623	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013673, intron 17 of 19)	RLTR53B_Mm|LTR|ERVK	33083.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	63.4	59.61	63.32	58.32	67.5	84.98	48.16	50.36	57.83	75.82	97.48	66.41
Merged-chr8-70527745-3	chr8	70527663	70527863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199631)	promoter-TSS (NM_001199631)	20.0	NM_010223	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	41.59	43.51	37.08	41.43	58.09	51.74	34.88	36.84	50.75	34.65	52.76	31.95
Merged-chr7-29156202-3	chr7	29156093	29156293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	17.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	27.46	28.93	24.53	26.55	27.41	35.75	16.61	24.81	34.22	37.16	52.26	14.72
Merged-chr6-49263440-3	chr6	49263374	49263574	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362188, intron 1 of 8)	CpG	578.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	29.07	22.64	17.11	16.09	24.55	36.06	28.23	27.76	31.27	28.12	41.2	35.4
Merged-chr19-10842450-3	chr19	10842349	10842549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-95.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	167.98	163.24	158.59	167.32	182.05	217.31	138.18	123.87	195.7	192.31	198.98	120.92
Merged-chr7-44815883-3	chr7	44815828	44816028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030693)	promoter-TSS (NM_030693)	-160.0	NM_053074	18226.0	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	152.23	149.66	140.9	158.06	203.73	247.41	141.84	160.07	208.88	229.46	264.81	127.81
Merged-chr10-81414068-3	chr10	81413953	81414153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	2244.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	29.88	19.62	15.97	26.95	31.91	28.54	17.61	21.67	43.47	40.67	45.73	25.69
Merged-chr1-64448200-3	chr1	64448098	64448298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84606.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	45.63	19.12	46.21	35.39	24.14	17.87	37.87	25.91	28.52	23.6	30.65	25.69
Merged-chr9-4310935-3	chr9	4310839	4311039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164574, intron 1 of 2)	L2|LINE|L2	1123.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	89.24	59.36	71.88	57.51	37.64	74.94	54.48	87.67	97.75	78.33	115.57	63.91
Merged-chr7-102687290-3	chr7	102687190	102687390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001307998)	promoter-TSS (NM_001307998)	37.0	NM_198012	101700.0	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	68.65	60.12	81.58	76.02	89.59	79.65	89.69	116.1	75.92	62.76	79.89	58.27
Merged-chr1-91065083-3	chr1	91064980	91065180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	11636.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	27.86	22.64	59.9	23.73	43.77	29.48	28.57	44.94	36.39	27.62	41.71	34.15
Merged-chr9-14758794-3	chr9	14758691	14758891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029306, intron 3 of 3)	intron (NM_029306, intron 3 of 3)	-6669.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	23.02	31.94	43.93	41.02	51.96	65.54	48.16	68.78	50.75	54.23	88.94	50.12
Merged-chr12-108994780-3	chr12	108994668	108994868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	73449.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	44.82	35.97	34.8	55.5	47.87	59.58	71.08	84.51	44.06	65.78	106.53	39.47
Merged-chrX-135009292-3	chrX	135009194	135009394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175446)	promoter-TSS (NM_175446)	-85.0	NM_175446	215693.0	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	57.34	73.95	70.74	73.6	92.05	115.71	76.4	89.8	112.9	134.56	167.33	67.04
Merged-chr16-91734965-3	chr16	91734861	91735061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	Lx8|LINE|L1	5590.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	26.65	17.86	23.39	18.1	34.36	32.3	16.94	31.26	18.29	7.03	40.7	22.24
Merged-chr1-82839464-3	chr1	82839372	82839572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010472)	promoter-TSS (NM_010472)	12.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	59.36	77.47	73.02	68.78	74.46	79.33	76.73	92.75	72.38	100.42	79.89	57.33
Merged-chr2-22727336-3	chr2	22727239	22727439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-46988.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	33.92	25.4	57.05	71.19	54.82	21.64	54.48	73.74	62.55	40.67	82.91	54.82
Merged-chr1-191576036-3	chr1	191575932	191576132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029766)	promoter-TSS (NM_029766)	396.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	60.57	87.53	87.28	66.77	76.91	99.4	50.16	75.34	120.37	103.94	160.79	81.45
Merged-chr16-30945171-3	chr16	30945056	30945256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136276.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	26.65	23.14	39.93	24.13	39.27	38.26	24.91	30.28	35.01	29.62	32.66	17.54
Merged-chr3-142530228-3	chr3	142530128	142530328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-108.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	88.43	67.91	98.69	100.95	102.68	121.67	97.33	136.21	104.44	112.47	86.93	76.44
Merged-chr19-6334916-3	chr19	6334821	6335021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-58.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	128.81	100.36	87.85	104.17	126.41	161.18	68.43	110.36	125.49	125.02	138.18	62.97
Merged-chr7-140941508-3	chr7	140941409	140941609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153832, exon 1 of 12)	non-coding (NR_153832, exon 1 of 12)	118.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	49.67	49.05	43.93	58.32	52.37	83.41	58.79	58.18	92.25	84.35	121.1	62.97
Merged-chr7-128238240-6	chr7	128238140	128238340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177001)	promoter-TSS (NM_177001)	-209.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	70.26	84.26	72.45	76.82	85.5	105.99	94.0	64.29	70.61	138.58	64.32	56.39
Merged-chr2-120609357-3	chr2	120609251	120609451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025475)	promoter-TSS (NM_025475)	7.0	NM_001159612	66606.0	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	46.03	47.79	42.78	51.08	58.5	57.7	27.57	56.36	69.23	58.24	62.31	36.65
Merged-chrX-152232852-3	chrX	152232741	152232941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013668)	promoter-TSS (NM_013668)	-386.0	NM_013668	20591.0	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	68.24	54.08	44.5	49.47	84.28	92.5	58.46	78.42	67.86	79.83	87.43	41.98
Merged-chr6-47454572-5	chr6	47454495	47454695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-162.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	18.57	29.93	17.68	16.09	43.36	53.62	46.5	29.13	37.37	49.21	62.81	28.51
Merged-chr6-89421719-3	chr6	89421628	89421828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59115.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	73.49	73.95	77.58	83.66	69.96	121.98	62.12	85.74	108.18	93.39	130.65	66.41
Merged-chr3-138143827-3	chr3	138143724	138143924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163457)	promoter-TSS (NM_001163457)	25.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	210.38	166.26	157.45	128.7	216.01	216.99	137.85	166.21	248.61	241.01	219.08	129.38
Merged-chr11-101278974-3	chr11	101278871	101279071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026618)	promoter-TSS (NM_026618)	-23.0	NM_026618	52469.0	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	26.25	26.16	29.09	22.52	54.0	46.72	25.58	35.3	39.14	31.13	48.24	24.75
Merged-chr8-25601483-3	chr8	25601377	25601577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-124.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	115.89	106.65	78.15	119.05	103.09	122.29	105.96	109.43	125.49	114.48	157.78	93.67
Merged-chr3-108911194-3	chr3	108911083	108911283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025845, exon 1 of 6)	exon (NM_025845, exon 1 of 6)	546.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	46.03	40.5	37.65	55.91	48.68	53.31	50.49	37.96	76.31	63.27	87.43	48.24
Merged-chr1-131688678-3	chr1	131688585	131688785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311096)	promoter-TSS (NM_001311096)	-10.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	40.38	36.22	50.2	32.98	30.68	54.25	35.54	41.16	44.84	55.23	78.89	28.51
Merged-chr9-121710277-3	chr9	121710184	121710384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026794)	promoter-TSS (NM_026794)	-105.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	184.13	165.0	168.28	130.71	189.01	247.1	133.86	161.08	230.91	214.9	267.82	137.84
Merged-chrM-11069-1	chrM	10969	11169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr		Intergenic											35543.71	35746.65	45032.42	46172.53	35114.17	42232.93	41610.39	42456.09	0.0	0.0	0.0	0.0
Merged-chr16-45158748-3	chr16	45158647	45158847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356453)	promoter-TSS (NM_001356453)	-74.0	NM_028756	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	203.92	168.52	162.01	219.2	218.05	222.64	202.29	237.98	317.45	261.09	338.67	200.18
Merged-chr12-55450553-3	chr12	55450469	55450669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	42078.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	78.34	57.35	81.58	98.14	92.87	105.99	156.12	158.16	105.82	103.43	152.75	71.42
Merged-chr1-36001102-3	chr1	36000974	36001174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-67326.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	41.59	36.97	62.75	53.89	18.0	28.85	36.87	32.13	35.8	21.09	50.25	20.05
Merged-chr4-105716918-3	chr4	105716824	105717024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-524289.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	25.04	12.83	31.38	48.26	24.96	18.5	32.88	43.88	31.86	27.11	53.77	26.31
Merged-chr14-20929328-3	chr14	20929302	20929502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	4.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	73.49	56.09	77.01	77.62	91.64	100.03	47.5	82.88	103.26	105.44	139.69	51.38
Merged-chr6-148578281-1	chr6	148578181	148578381	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	36028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	10.09	9.56	14.26	17.7	18.41	10.66	11.29	10.21	16.72	18.58	31.15	13.47
Merged-chr10-12922699-3	chr10	12922606	12922806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038027, exon 1 of 4)	non-coding (NR_038027, exon 1 of 4)	421.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	46.44	48.29	59.33	32.58	49.09	63.03	46.5	67.4	78.09	55.73	50.75	39.16
Merged-chr3-51195460-3	chr3	51195368	51195568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	68.24	78.23	100.4	90.9	158.73	210.72	189.34	198.87	198.46	224.94	302.49	118.1
Merged-chr10-127289949-3	chr10	127289839	127290039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-854.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	39.17	30.43	42.21	32.58	39.27	39.51	28.9	57.9	69.23	37.16	82.41	46.68
Merged-chr12-32215334-3	chr12	32215238	32215438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6689.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	23.02	12.32	12.55	16.49	24.14	22.89	18.93	22.65	17.11	15.57	10.55	7.21
Merged-chr2-45013502-3	chr2	45013412	45013612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	9665.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	26.65	22.39	14.83	22.93	21.27	16.93	15.28	26.38	29.9	26.11	38.19	14.41
Merged-chr2-150896037-3	chr2	150895926	150896126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	MLT1A0-int|LTR|ERVL-MaLR	8705.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	52.09	39.74	55.9	80.84	48.68	50.17	72.41	100.37	51.53	61.76	80.4	54.82
Merged-chr2-48716427-3	chr2	48716317	48716517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97692.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	25.84	44.77	25.1	36.6	51.14	47.98	32.88	45.7	49.17	28.62	46.23	26.94
Merged-chr8-107056760-3	chr8	107056645	107056845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164472)	promoter-TSS (NM_001164472)	-8.0	NM_139229	97484.0	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	81.97	86.27	99.26	83.66	105.14	131.07	77.4	99.25	136.11	129.04	143.71	122.8
Merged-chrX-167484047-1	chrX	167483947	167484147	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033330, intron 17 of 19)	intron (NM_001033330, intron 17 of 19)	-101298.0	NM_001313758	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	4.85	1.51	2.85	2.82	2.86	0.63	10.63	8.19	2.56	4.02	1.0	0.63
Merged-chr6-31112494-1	chr6	31112394	31112594	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-49401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	11.71	10.06	23.96	7.64	15.14	15.99	14.62	19.79	22.62	23.1	20.1	26.63
Merged-chr5-103721687-3	chr5	103721558	103721758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32504.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	64.2	80.74	62.75	52.69	67.5	92.82	62.45	37.32	90.48	109.96	114.57	30.07
Merged-chr8-94365733-3	chr8	94365619	94365819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-20710.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	162.33	98.1	147.75	135.14	175.51	205.39	171.4	161.78	180.17	167.7	261.79	104.63
Merged-chr11-84869846-1	chr11	84869746	84869946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_131201)	promoter-TSS (NR_131201)	-159.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	39.98	27.67	21.11	27.35	29.05	39.2	17.94	24.5	52.12	36.15	43.72	25.06
Merged-chr6-120822355-3	chr6	120822270	120822470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	328.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	29.88	32.45	21.68	18.5	24.14	68.05	21.26	20.75	80.84	58.24	60.8	28.51
Merged-chr17-33779486-3	chr17	33779358	33779558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2117.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	31.09	20.63	27.95	22.52	68.73	41.71	35.21	36.22	39.14	37.16	36.68	20.05
Merged-chr3-96601039-3	chr3	96600950	96601150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-83.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	54.51	34.96	49.63	41.83	72.41	71.49	39.53	58.82	52.52	62.76	90.95	48.24
Merged-chr10-37376410-1	chr10	37376310	37376510	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-237484.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.44	4.02	6.85	11.26	5.73	4.39	6.98	11.78	8.26	6.03	10.05	5.01
Merged-chr15-100687239-3	chr15	100687145	100687345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 1 of 7)	intron (NM_033612, intron 1 of 7)	675.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	19.79	18.11	21.68	18.1	18.41	14.74	11.29	13.04	23.8	25.11	36.18	22.24
Merged-chr9-14867189-3	chr9	14867109	14867309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010287, intron 3 of 3)	intron (NM_010287, intron 3 of 3)	6999.0	NM_010287	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	21.0	25.15	30.23	30.57	25.36	27.28	26.24	37.54	24.39	27.11	45.22	15.98
Merged-chr4-119127449-3	chr4	119127352	119127552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18707.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	47.24	38.99	53.62	38.21	54.0	51.74	33.55	45.34	55.86	42.18	77.38	49.18
Merged-chr13-111490154-4	chr13	111490177	111490377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	-150.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	153.44	190.91	146.61	172.95	174.69	232.98	147.82	143.5	288.54	344.95	284.91	177.94
Merged-chr10-77530282-3	chr10	77530183	77530383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008404)	promoter-TSS (NM_008404)	-65.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	34.73	18.86	48.49	24.53	58.09	45.15	29.9	49.57	44.65	43.68	78.39	34.77
Merged-chr5-121451400-3	chr5	121451313	121451513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	1061.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	37.55	52.32	60.47	51.48	54.0	50.17	33.55	38.52	65.5	72.3	81.4	60.15
Merged-chr14-75176786-3	chr14	75176706	75176906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	40381.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	71.88	69.17	67.31	62.74	68.73	95.01	50.49	66.03	105.62	102.93	93.96	66.73
Merged-chr10-66852896-3	chr10	66852809	66853009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67475.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	72.68	44.77	57.62	59.12	64.23	69.3	25.58	58.18	64.71	70.8	89.44	51.69
Merged-chr15-19857819-2	chr15	19857726	19857926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	672453.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	87.22	79.23	47.92	53.09	1.23	0.31	0.0	0.2	131.58	145.11	115.57	41.98
Merged-chr12-110764750-3	chr12	110764645	110764845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	26813.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	41.19	33.45	45.07	58.32	24.55	36.37	38.2	51.03	37.96	19.58	27.13	25.69
Merged-chr6-126849126-3	chr6	126849052	126849252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025358)	promoter-TSS (NM_025358)	-8.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	41.59	29.93	26.81	27.35	36.0	41.08	28.9	37.54	62.15	49.71	45.73	41.66
Merged-chr15-101973894-3	chr15	101973797	101973997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19610.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	41.19	36.97	39.93	21.72	45.41	51.11	28.9	32.86	55.66	57.74	61.81	29.45
Merged-chr16-4558721-3	chr16	4558610	4558810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031182, intron 1 of 6)	CpG	1010.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	41.59	25.4	35.94	16.89	53.18	50.17	32.88	39.65	42.68	42.68	82.91	31.01
Merged-chr5-120570411-3	chr5	120570320	120570520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	18193.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	83.99	54.33	83.29	63.55	102.68	81.53	70.09	113.08	81.04	99.42	97.98	75.18
Merged-chr2-50842092-3	chr2	50841962	50842162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67622.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	129.21	147.65	123.22	156.86	144.82	154.59	111.94	179.16	157.94	133.06	192.95	113.72
Merged-chr19-6235890-3	chr19	6235795	6235995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-55.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	53.3	61.62	72.45	64.75	59.73	77.45	43.51	57.81	95.98	87.37	108.03	60.77
Merged-chr10-81037342-3	chr10	81037243	81037443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358898)	promoter-TSS (NM_001358898)	-12.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	39.57	49.3	64.46	63.55	72.0	81.53	61.45	42.73	80.25	91.38	95.47	74.87
Merged-chr14-78732849-3	chr14	78732755	78732955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-126.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	62.59	44.77	55.9	69.58	66.27	76.51	41.85	67.29	55.07	54.23	64.82	37.59
Merged-chr9-65346110-3	chr9	65346005	65346205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	37.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	43.21	30.18	39.93	47.46	24.14	50.17	27.9	36.56	45.04	62.26	33.67	36.97
Merged-chr10-89462011-3	chr10	89461901	89462101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009108, intron 7 of 8)	intron (NM_009108, intron 7 of 8)	-18034.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	27.86	21.13	22.82	23.33	34.77	38.26	26.24	36.59	35.01	42.68	46.23	23.18
Merged-chr6-124741165-3	chr6	124741058	124741258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-79.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	108.22	104.13	98.12	87.68	121.91	174.03	70.75	83.05	118.8	123.02	93.96	64.22
Merged-chr9-106270066-3	chr9	106269974	106270174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10987.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	28.67	16.85	20.54	22.93	21.27	25.4	16.28	17.05	35.6	42.18	45.73	27.25
Merged-chr11-113172650-1	chr11	113172550	113172750	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	29188.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	3.23	0.0	1.14	1.21	0.82	1.57	1.33	0.95	11.21	5.52	17.08	7.52
Merged-chr1-159231651-1	chr1	159231551	159231751	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-549.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	5.25	5.79	7.99	8.45	8.59	4.7	9.63	4.01	15.93	16.07	12.56	12.84
Merged-chr3-89394925-5	chr3	89394781	89394981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	591.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	12.92	23.9	11.41	8.85	18.0	12.23	17.61	8.3	22.03	26.11	15.07	15.66
Merged-chr9-78588661-3	chr9	78588580	78588780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	-635.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	87.62	101.11	82.15	87.68	90.0	120.1	86.36	110.13	107.2	95.4	116.07	80.82
Merged-chr5-62766344-3	chr5	62766253	62766453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178407)	promoter-TSS (NM_178407)	-176.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	26.25	25.15	21.68	31.37	45.0	35.43	29.56	40.35	26.36	24.6	31.66	15.04
Merged-chr9-60991722-3	chr9	60991635	60991835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25334.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	67.43	62.38	73.59	71.59	91.23	88.43	56.8	72.36	68.45	62.26	107.53	47.62
Merged-chr8-84815724-3	chr8	84815617	84815817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033145, exon 2 of 2)	non-coding (NR_033145, exon 2 of 2)	7106.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	43.61	36.47	27.95	33.38	61.77	45.78	26.24	31.26	40.12	27.62	55.27	34.77
Merged-chr4-132167632-3	chr4	132167548	132167748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23162.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	33.52	17.1	45.64	30.16	27.0	26.65	21.26	29.92	40.12	62.76	50.75	27.88
Merged-chr12-111678055-3	chr12	111677964	111678164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-41.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	51.28	47.54	61.61	49.87	52.37	53.93	33.55	48.59	63.53	42.68	76.38	31.33
Merged-chr9-103111785-1	chr9	103111685	103111885	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173781)	promoter-TSS (NM_173781)	-289.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.4	1.01	10.27	1.21	0.0	0.0	1.33	2.3	26.55	20.59	23.11	21.3
Merged-chr2-45114099-3	chr2	45113995	45114195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-816.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	28.27	38.74	18.25	12.87	25.77	48.6	20.26	14.94	46.62	37.16	51.76	29.13
Merged-chr2-35496738-1	chr2	35496638	35496838	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35289.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.86	5.28	5.13	4.83	4.09	5.33	7.31	9.87	4.72	4.52	6.53	4.39
Merged-chr7-28378618-3	chr7	28378516	28378716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011756, intron 1 of 1)	CpG	612.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	146.98	189.4	85.57	90.49	109.64	177.48	79.72	52.93	167.18	205.86	191.45	95.86
Merged-chr6-86396152-3	chr6	86396062	86396262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	988.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	37.55	25.15	49.06	34.99	49.91	43.27	52.48	51.14	57.04	55.23	45.73	30.7
Merged-chr12-116281141-3	chr12	116281016	116281216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028731)	promoter-TSS (NM_028731)	-106.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	138.1	105.39	109.53	134.33	171.01	166.19	147.82	176.66	220.29	213.9	275.86	151.31
Merged-chr8-71951022-3	chr8	71950926	71951126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-40.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	142.54	95.33	129.49	154.04	198.82	198.18	161.77	182.1	135.32	185.78	198.48	109.33
Merged-chr3-36475836-3	chr3	36475732	36475932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	55.0	NM_009673	11747.0	Mm.1620	NM_009673	ENSMUSG00000027712	Anxa5	Anx5|R74653	annexin A5	protein-coding	302.85	272.15	293.79	306.48	327.28	456.56	321.21	359.52	357.19	354.99	538.16	246.85
Merged-chr5-65102824-3	chr5	65102727	65102927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4741.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	18.98	19.37	21.68	32.98	28.23	20.07	25.91	37.88	26.55	40.17	32.16	21.62
Merged-chr10-62190163-3	chr10	62190079	62190279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	4048.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	19.79	17.86	30.23	34.19	31.5	20.38	50.16	64.57	29.31	26.11	44.22	37.91
Merged-chr14-34673863-3	chr14	34673771	34673971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-57.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	110.64	82.0	123.79	102.56	140.32	130.76	87.03	143.55	163.45	142.1	210.04	98.05
Merged-chr5-135582573-3	chr5	135582480	135582680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-9531.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	41.99	34.21	29.66	88.48	39.68	61.15	34.21	46.77	53.7	51.21	43.72	24.75
Merged-chr4-135987236-3	chr4	135987158	135987358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-14.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	89.24	70.68	79.29	53.09	67.5	83.1	39.2	64.63	98.34	71.8	99.99	57.64
Merged-chr2-101177991-3	chr2	101177887	101178087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-446761.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	44.82	52.57	55.33	48.67	56.46	47.66	59.46	96.48	80.84	66.78	76.38	62.03
Merged-chr1-44119681-6	chr1	44119576	44119776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	148.0	NM_001357048	246229.0	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	10.9	6.54	5.7	10.86	15.55	12.86	19.93	10.37	15.93	27.11	24.62	23.18
Merged-chr18-37883679-3	chr18	37883605	37883805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-29045.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	66.63	68.67	51.91	52.29	51.14	78.08	31.22	64.23	87.53	84.86	98.99	45.42
Merged-chr3-87515927-4	chr3	87515782	87515982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9696.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	26.65	26.41	17.68	29.36	33.55	31.36	36.54	24.98	22.23	21.09	39.19	15.98
Merged-chr15-74672644-3	chr15	74672549	74672749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-79.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	172.82	150.92	148.32	151.63	187.78	179.36	126.89	195.06	163.25	192.31	187.93	80.82
Merged-chr13-44482880-3	chr13	44482796	44482996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	43169.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	41.59	37.73	49.06	52.29	49.5	44.84	24.58	48.7	61.76	56.74	67.33	37.59
Merged-chr11-98587309-3	chr11	98587233	98587433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025661)	promoter-TSS (NM_025661)	-88.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	65.41	50.05	26.81	30.97	69.96	70.87	29.9	50.75	66.68	68.79	63.82	42.29
Merged-chr5-148678704-1	chr5	148678604	148678804	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10B2|LTR|ERVK	-63136.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	1.21	1.01	1.14	1.61	1.64	0.63	1.99	0.0	56.65	51.21	69.34	24.12
Merged-chr13-113580045-3	chr13	113579938	113580138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38526.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	39.57	14.34	51.91	24.53	22.09	24.77	19.6	35.47	40.52	20.08	31.15	22.56
Merged-chr1-75521511-3	chr1	75521401	75521601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-28.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	29.88	27.42	43.93	30.57	41.73	37.0	33.88	35.3	65.5	45.69	65.83	27.88
Merged-chr14-70351458-3	chr14	70351373	70351573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135151)	promoter-TSS (NM_001135151)	-49.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	49.26	39.49	70.17	48.26	78.55	68.67	38.2	54.31	88.71	58.24	113.06	49.18
Merged-chr18-23754568-3	chr18	23754474	23754674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	849.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	123.16	99.61	99.26	84.86	56.05	53.93	31.56	43.77	144.76	129.04	136.17	78.94
Merged-chr17-10392891-3	chr17	10392796	10392996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63320.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	69.05	55.84	78.72	98.94	72.41	63.34	79.06	102.81	83.4	66.78	126.63	55.13
Merged-chr9-41088149-3	chr9	41088056	41088256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	L2b|LINE|L2	-8650.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	73.09	58.61	72.45	80.44	56.05	76.2	56.14	78.42	110.74	115.48	113.56	63.28
Merged-chr10-60705320-3	chr10	60705230	60705430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8840.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	32.71	37.48	50.2	26.14	31.5	44.21	27.9	30.42	43.07	45.19	44.72	30.39
Merged-chr3-103172855-3	chr3	103172770	103172970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356330, intron 2 of 5)	RCHARR1|DNA|hAT-Charlie	1215.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	31.9	34.71	35.37	37.4	38.86	51.43	38.2	44.22	71.4	48.2	61.3	31.33
Merged-chr18-75005793-3	chr18	75005674	75005874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001181)	promoter-TSS (NM_001001181)	-65.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	129.21	143.87	132.92	165.71	164.05	190.97	124.56	185.92	219.31	194.31	263.8	132.51
Merged-chr4-62349633-3	chr4	62349540	62349740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	10956.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	47.24	46.78	41.64	34.59	56.46	75.57	41.19	61.93	52.71	63.77	48.24	26.94
Merged-chr19-40998689-3	chr19	40998594	40998794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4159.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	39.57	42.76	68.45	46.66	66.68	36.69	46.17	65.47	42.88	21.59	38.19	27.88
Merged-chr4-133553261-3	chr4	133553176	133553376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011850)	promoter-TSS (NM_011850)	-100.0	NM_011850	23957.0	Mm.346759	NM_011850	ENSMUSG00000037583	Nr0b2	SHP|SHP-1|Shp1	nuclear receptor subfamily 0, group B, member 2	protein-coding	28.67	16.1	9.7	12.47	28.23	17.25	17.61	16.32	18.1	14.06	18.09	4.7
Merged-chr9-110476774-4	chr9	110476670	110476870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010628)	promoter-TSS (NM_010628)	-76.0	NM_177771	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	44.42	34.21	25.1	29.36	37.64	36.69	24.91	21.06	25.57	30.13	26.63	23.18
Merged-chr17-33955298-2	chr17	33955206	33955406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357330)	promoter-TSS (NM_001357330)	335.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	17.77	27.92	16.54	7.24	10.23	12.23	16.28	6.87	22.42	21.59	20.6	20.99
Merged-chr12-12230282-3	chr12	12230183	12230383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-31856.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	110.64	109.41	138.05	90.49	93.68	143.62	98.99	81.87	162.86	148.12	146.22	84.9
Merged-chr2-181187232-3	chr2	181187129	181187329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356427)	promoter-TSS (NM_001356427)	-18.0	NM_025598	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	121.14	91.05	122.65	108.59	117.41	148.32	121.57	140.92	186.85	171.72	226.12	105.88
Merged-chr11-118470411-3	chr11	118470308	118470508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6424.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	12.92	4.53	17.11	20.11	33.96	23.2	33.22	43.15	17.7	15.57	30.65	18.17
Merged-chr7-88277399-3	chr7	88277309	88277509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-676.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	79.95	65.9	75.3	89.69	51.55	95.33	52.48	80.97	100.7	69.79	96.48	61.4
Merged-chr4-140701283-3	chr4	140701185	140701385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-188.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	25.04	20.12	39.36	24.13	35.18	25.4	19.27	24.95	47.6	42.18	46.73	15.98
Merged-chrX-167102129-1	chrX	167102029	167102229	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31759.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	5.65	5.79	3.42	9.65	5.32	10.98	2.66	13.65	5.11	6.53	6.53	1.88
Merged-chr4-102515132-3	chr4	102514995	102515195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-54965.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	39.98	37.48	74.16	61.54	0.0	18.5	0.0	24.34	43.86	37.66	52.26	24.75
Merged-chr2-120296300-3	chr2	120296171	120296371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7202.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	43.61	33.96	69.03	62.34	32.73	26.03	27.57	51.53	38.75	30.13	71.86	34.15
Merged-chr3-145105634-3	chr3	145105534	145105734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6528.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	52.9	34.71	38.79	41.83	81.41	62.09	63.11	83.19	74.74	79.83	83.41	51.06
Merged-chr19-16015874-3	chr19	16015791	16015991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30816.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	53.3	46.28	65.6	69.18	53.18	47.98	53.81	62.89	62.15	51.72	71.35	27.88
Merged-chr2-150831235-3	chr2	150831126	150831326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11344.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	32.3	30.18	71.31	67.57	49.5	39.82	57.47	86.66	43.47	33.14	59.29	38.53
Merged-chr6-38550766-3	chr6	38550666	38550866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-568.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	27.05	17.61	47.92	20.11	27.41	42.33	23.92	41.22	39.53	39.67	48.74	20.68
Merged-chr3-115997121-3	chr3	115997040	115997240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023214, intron 2 of 10)	U6|snRNA|snRNA	10266.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	27.46	24.65	22.82	16.09	29.05	27.28	18.93	25.32	33.83	43.18	37.69	31.64
Merged-chr16-91044542-3	chr16	91044434	91044634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026110)	promoter-TSS (NM_026110)	-155.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	74.7	82.0	84.43	87.28	105.96	98.15	60.46	79.21	126.86	107.45	131.15	86.77
Merged-chr11-87470996-3	chr11	87470882	87471082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	43391.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	53.7	35.72	45.07	41.83	34.77	65.22	36.87	31.63	53.3	63.27	58.29	31.33
Merged-chr15-53529658-3	chr15	53529555	53529755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	84624.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	51.69	26.91	54.19	34.99	76.91	67.1	54.81	112.43	86.74	63.27	93.96	59.21
Merged-chr15-50109025-2	chr15	50108872	50109072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	780077.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	15.75	19.62	19.97	21.32	0.82	0.0	1.99	1.51	17.9	14.56	26.13	12.22
Merged-chr14-51128971-3	chr14	51128872	51129072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-65.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	46.03	69.17	55.33	72.4	75.28	61.77	51.82	82.04	57.24	43.18	81.9	38.53
Merged-chr6-113494587-3	chr6	113494447	113494647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	7271.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	52.09	50.31	49.06	29.76	66.27	74.63	44.84	34.01	58.42	69.79	58.29	44.17
Merged-chr9-40765763-3	chr9	40765653	40765853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-35520.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	27.86	18.36	37.65	43.04	33.14	37.32	29.23	39.62	37.76	27.62	39.7	34.46
Merged-chr1-155065444-3	chr1	155065323	155065523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 4 of 6)	L2b|LINE|L2	17841.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	46.84	25.4	62.18	61.54	49.5	63.03	35.87	79.82	53.89	37.16	81.9	49.18
Merged-chr1-184034364-3	chr1	184034295	184034495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	14.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	272.56	214.3	322.88	247.35	294.96	310.75	224.22	294.23	327.09	325.36	461.78	202.68
Merged-chr15-59729014-3	chr15	59728917	59729117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	65942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	70.26	62.38	98.12	94.11	70.37	87.8	48.16	88.46	102.67	83.35	136.17	69.86
Merged-chr12-3834637-3	chr12	3834520	3834720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	27460.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	39.17	42.26	46.21	39.01	46.64	51.11	36.21	35.89	64.32	39.67	55.78	41.35
Merged-chr4-131873485-3	chr4	131873366	131873566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020587)	promoter-TSS (NM_020587)	-173.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	104.18	99.35	86.14	76.42	105.55	126.37	75.73	72.7	144.57	158.67	150.24	69.86
Merged-chr16-36717676-3	chr16	36717598	36717798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	23720.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	81.16	62.63	104.39	88.89	118.64	137.66	110.28	145.46	104.24	80.84	119.59	57.64
Merged-chr15-58980347-3	chr15	58980208	58980408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46498.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	33.52	32.7	27.95	13.67	48.68	43.27	43.51	44.94	25.57	23.6	24.12	17.23
Merged-chr10-77610322-3	chr10	77610241	77610441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301673, intron 2 of 3)	L1MC5|LINE|L1	-3368.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	27.05	19.62	37.65	22.52	42.96	28.22	30.23	54.59	20.46	27.62	26.63	25.37
Merged-chr12-98290671-3	chr12	98290581	98290781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	22046.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	32.71	26.91	37.08	32.18	34.77	20.38	25.58	40.79	36.39	33.64	44.72	23.81
Merged-chr4-141858787-3	chr4	141858672	141858872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-12413.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	50.47	47.29	42.21	32.58	71.18	94.39	41.52	34.04	112.9	96.4	98.49	65.16
Merged-chr6-134068633-3	chr6	134068546	134068746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	32946.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	20.19	19.37	30.23	26.14	25.36	26.65	18.6	29.05	38.94	25.61	42.71	23.49
Merged-chr2-33755843-3	chr2	33755761	33755961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49955.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	46.84	38.48	65.6	62.34	56.46	79.33	61.78	78.11	52.52	49.71	67.33	48.87
Merged-chr2-30712173-3	chr2	30712049	30712249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9061.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	69.45	29.93	31.38	32.18	84.28	60.21	36.21	60.62	82.22	45.19	87.43	49.5
Merged-chr6-120151896-3	chr6	120151795	120151995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-41928.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	30.28	16.1	32.52	38.61	57.68	59.89	46.84	68.92	60.19	52.72	66.83	30.7
Merged-chr18-36018293-3	chr18	36018178	36018378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53448.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	55.72	35.21	24.53	30.57	49.09	55.5	36.54	41.72	62.35	53.73	81.9	43.86
Merged-chr4-25281884-3	chr4	25281778	25281978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355512)	promoter-TSS (NM_001355512)	-57.0	NM_001355512	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	176.05	191.92	205.36	199.09	234.83	234.87	187.34	238.91	284.61	268.63	305.01	166.97
Merged-chr2-103945091-3	chr2	103945001	103945201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12894.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	44.82	32.45	74.73	76.02	51.96	37.32	34.21	78.98	60.58	57.24	97.48	44.8
Merged-chr13-43802959-3	chr13	43802851	43803051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289915, exon 5 of 5)	3' UTR (NM_001289915, exon 5 of 5)	17839.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	44.82	48.54	45.64	35.8	77.73	85.92	44.84	68.5	56.06	86.36	49.24	47.62
Merged-chrX-73054061-3	chrX	73053981	73054181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10706.0	NM_153169	245468.0	Mm.256249	NM_153169	ENSMUSG00000046287	Pnma3	-	paraneoplastic antigen MA3	protein-coding	28.67	25.4	36.51	25.34	34.77	34.18	33.88	33.87	26.16	35.65	54.27	33.21
Merged-chr17-88509269-3	chr17	88509122	88509322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20902.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	143.75	130.54	134.63	147.21	167.73	190.97	137.19	168.87	135.12	147.62	177.38	95.86
Merged-chr3-69163283-3	chr3	69163174	69163374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	32041.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	18.98	23.39	35.37	18.9	33.55	39.51	19.27	30.84	43.27	39.67	56.28	26.94
Merged-chr4-140961259-3	chr4	140961163	140961363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023374)	promoter-TSS (NM_023374)	-8.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	199.48	151.67	139.76	141.57	171.82	224.52	129.55	153.79	210.26	182.26	257.27	125.93
Merged-chr15-5116511-3	chr15	5116407	5116607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-106.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	216.43	213.3	235.6	196.68	238.92	301.03	215.58	268.54	298.18	256.58	390.93	166.97
Merged-chr6-49367743-3	chr6	49367646	49367846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172216)	promoter-TSS (NM_001172216)	7.0	NM_172727	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	50.88	44.27	55.33	51.08	69.96	74.63	57.47	83.89	103.26	99.92	116.07	57.64
Merged-chr15-84256475-3	chr15	84256390	84256590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	24447.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	53.3	29.93	86.71	43.44	28.64	40.76	37.87	57.06	34.62	36.15	48.24	24.75
Merged-chr4-108780737-3	chr4	108780644	108780844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	CpG	344.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	24.63	29.43	28.52	25.74	28.64	31.04	22.26	29.27	42.88	24.1	51.76	26.94
Merged-chr17-69199885-4	chr17	69199829	69200029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	40573.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	17.77	24.65	18.25	28.96	16.36	19.76	15.28	15.34	19.87	16.57	22.61	17.86
Merged-chr6-40573810-3	chr6	40573708	40573908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2420.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	47.65	47.29	69.6	115.43	62.18	54.56	93.01	124.65	61.96	58.24	68.84	38.22
Merged-chr10-92861775-1	chr10	92861675	92861875	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-139357.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	1.21	2.26	10.27	6.44	4.09	3.45	11.96	9.17	0.79	0.0	1.0	2.19
Merged-chr6-39573968-3	chr6	39573876	39574076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178873)	promoter-TSS (NM_178873)	100.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	23.82	14.84	33.09	25.34	34.36	35.12	35.54	37.54	21.05	22.59	33.67	29.13
Merged-chr18-31911206-3	chr18	31911067	31911267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	736.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	47.65	52.57	56.48	73.6	64.64	76.2	67.76	65.92	57.04	77.32	88.94	40.72
Merged-chr9-89198910-1	chr9	89198810	89199010	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-363.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	12.92	13.08	13.69	12.47	13.91	24.46	15.61	1.15	13.77	18.58	20.1	7.52
Merged-chr10-13968068-3	chr10	13967930	13968130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	1651.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	23.42	22.39	18.83	17.29	22.91	24.77	28.23	24.39	21.64	19.58	24.12	20.05
Merged-chr8-95808108-3	chr8	95808017	95808217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-655.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	76.32	76.46	71.31	60.73	67.91	111.95	46.17	85.15	98.34	109.46	143.71	78.32
Merged-chr13-9094352-3	chr13	9094257	9094457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	(CGGGG)n|Simple_repeat|Simple_repeat	476.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	25.04	22.39	32.52	42.63	37.23	52.37	60.12	35.8	46.42	53.22	60.8	30.7
Merged-chr19-3360062-3	chr19	3359967	3360167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 5 of 18)	intron (NM_013495, intron 5 of 18)	-28790.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	77.93	82.75	56.48	35.39	80.59	88.74	35.87	36.25	68.64	88.87	35.17	37.91
Merged-chr8-66861129-3	chr8	66861039	66861239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163564, intron 1 of 7)	CpG	922.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	21.8	31.69	20.54	25.34	15.14	14.74	19.6	24.87	21.83	22.59	30.15	25.06
Merged-chr10-26797498-3	chr10	26797393	26797593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	24981.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	102.56	94.83	104.39	118.65	111.28	91.56	91.35	154.57	125.09	78.83	124.11	64.85
Merged-chr17-15564381-3	chr17	15564278	15564478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1055.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	150.21	140.1	139.76	181.79	234.01	203.2	151.47	232.29	244.09	198.83	288.93	149.11
Merged-chr18-66473203-3	chr18	66473087	66473287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14583.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	38.76	27.42	31.95	28.96	49.09	67.73	46.17	52.01	65.3	54.23	56.78	45.11
Merged-chr11-120041015-1	chr11	120040915	120041115	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	766.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.02	2.52	8.56	2.82	11.45	14.42	5.31	16.49	3.93	4.52	5.53	5.95
Merged-chr9-110527876-3	chr9	110527777	110527977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4720.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	28.27	20.37	29.09	14.88	21.68	14.74	12.95	19.43	32.26	25.11	30.15	14.72
Merged-chr16-21694170-3	chr16	21694107	21694307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	CpG	458.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	31.09	32.2	24.53	28.15	43.77	68.99	42.19	40.09	60.58	51.72	60.3	19.74
Merged-chr4-126202835-3	chr4	126202739	126202939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-129.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	201.49	234.68	233.89	211.56	192.28	290.37	181.37	157.07	269.46	310.3	261.79	161.96
Merged-chr1-53784484-2	chr1	53784397	53784597	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	718.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	25.04	20.12	31.95	23.33	24.55	16.62	20.26	26.83	31.08	32.13	48.24	20.68
Merged-chr3-83080936-3	chr3	83080841	83081041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	25403.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	23.82	15.09	15.4	17.29	22.09	35.75	12.62	31.21	19.08	25.11	32.16	24.43
Merged-chr10-60260764-3	chr10	60260662	60260862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16866.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	44.42	50.56	71.88	47.06	105.55	82.16	83.04	103.43	90.48	75.32	123.11	59.52
Merged-chr16-55799015-3	chr16	55798908	55799108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23130.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	110.64	115.7	150.03	170.53	130.09	170.9	128.22	143.36	118.01	148.62	141.2	88.03
Merged-chr12-91735804-3	chr12	91735691	91735891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50645.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	22.21	14.59	28.52	37.0	31.91	23.2	23.25	35.61	30.49	29.62	49.24	21.93
Merged-chr18-65600086-3	chr18	65599985	65600185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	-6598.0	NM_001361052	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	43.21	27.67	64.46	52.29	31.91	57.7	51.49	75.93	41.11	49.71	68.34	36.03
Merged-chr3-30864854-3	chr3	30864763	30864963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	8913.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	100.55	77.72	118.65	126.69	127.64	120.1	108.29	152.92	109.36	92.39	139.69	87.71
Merged-chr10-80930594-3	chr10	80930484	80930684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008655, intron 2 of 3)	CpG-1325	493.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	73.89	105.64	92.41	13.67	45.0	121.67	34.88	24.17	116.83	162.68	107.03	34.77
Merged-chr8-121585576-3	chr8	121585471	121585671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4897.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	169.19	169.53	202.51	172.95	185.32	213.23	151.14	158.13	209.28	233.98	228.63	130.01
Merged-chr8-79711739-3	chr8	79711629	79711829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	11.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	111.85	129.03	135.2	126.29	122.73	132.95	96.99	113.36	148.11	135.07	172.85	89.91
Merged-chr7-49396319-3	chr7	49396211	49396411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	150122.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	20.59	21.13	25.1	31.77	51.55	52.99	43.51	57.79	22.62	38.16	29.65	29.13
Merged-chr4-122853809-3	chr4	122853691	122853891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 6 of 8)	intron (NM_008917, intron 6 of 8)	17564.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	37.96	46.78	54.19	51.88	54.0	61.46	30.56	43.4	65.1	77.83	68.34	40.1
Merged-chr19-12433266-3	chr19	12433169	12433369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5364.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	49.26	37.73	52.48	51.08	33.14	55.82	28.23	41.05	28.52	18.58	25.63	12.22
Merged-chr16-91547020-3	chr16	91546917	91547117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-77.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	51.28	68.92	55.33	38.61	43.77	72.12	33.88	47.55	83.4	68.79	110.04	58.27
Merged-chr8-88138297-3	chr8	88138191	88138391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	85.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	67.03	56.34	69.03	69.18	70.37	71.49	49.16	77.33	85.56	65.27	84.92	47.62
Merged-chr5-124862611-3	chr5	124862524	124862724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	-81.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	61.38	41.0	38.22	35.8	48.27	59.58	24.91	46.54	67.46	66.78	71.35	48.56
Merged-chr17-43568517-3	chr17	43568439	43568639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	88.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	30.69	23.39	19.4	15.69	50.73	52.68	40.52	27.36	27.93	46.19	33.16	15.66
Merged-chr13-102689879-3	chr13	102689790	102689990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3657.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	55.32	35.97	63.32	64.75	49.5	62.09	46.5	76.29	67.46	53.73	66.83	41.66
Merged-chr9-50617201-5	chr9	50617087	50617287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028300)	promoter-TSS (NM_028300)	-134.0	NM_028300	72614.0	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	16.56	30.43	31.38	20.91	29.86	35.43	37.54	27.39	38.94	39.67	38.19	22.24
Merged-chr3-138519434-3	chr3	138519337	138519537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6754.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	39.17	28.17	33.66	33.78	56.05	47.35	29.23	45.59	56.45	43.68	69.34	45.42
Merged-chrX-53643761-3	chrX	53643677	53643877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024170)	promoter-TSS (NM_024170)	-14.0	NM_024170	66158.0	Mm.391252	NM_024170	ENSMUSG00000067925	Rtl8a	1110012O05Rik|Cxx1a|Mar8.2A/B|Mart8b	retrotransposon Gag like 8A	protein-coding	23.42	20.12	31.38	34.99	30.27	33.55	34.55	42.56	43.86	52.72	68.34	26.31
Merged-chr1-154175555-3	chr1	154175459	154175659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-25628.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	23.82	30.43	46.21	36.2	21.27	21.64	18.27	44.44	27.14	7.03	24.12	17.86
Merged-chr12-100878804-2	chr12	100878712	100878912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177673, exon 3 of 3)	exon (NM_001177673, exon 3 of 3)	20712.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	21.8	28.93	40.5	19.71	5.73	16.93	21.59	15.59	9.44	6.53	23.11	4.07
Merged-chr16-93750690-3	chr16	93750618	93750818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357118, intron 6 of 35)	intron (NM_001357118, intron 6 of 35)	20619.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	31.9	27.92	38.22	27.35	28.64	47.66	24.91	40.4	33.63	39.67	46.23	30.07
Merged-chr3-51326936-3	chr3	51326815	51327015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13729.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	31.09	27.17	34.23	33.38	49.91	39.51	46.84	61.91	51.34	49.71	41.2	34.46
Merged-chr10-127621132-3	chr10	127621077	127621277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-29.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	26.65	23.64	31.95	40.22	38.86	41.39	42.85	40.93	44.65	56.24	77.38	28.51
Merged-chr12-85985760-3	chr12	85985653	85985853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	93288.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	18.57	14.09	30.8	34.99	22.09	24.77	18.93	36.95	39.73	35.65	52.76	31.01
Merged-chr2-79132377-3	chr2	79132271	79132471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123055.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	121.95	77.47	106.68	112.62	112.91	127.62	97.99	112.96	121.75	138.08	95.97	67.67
Merged-chr2-120353086-3	chr2	120352976	120353176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027618)	promoter-TSS (NR_027618)	57.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	71.07	41.5	53.62	45.45	59.32	78.71	28.9	62.22	70.41	46.7	60.3	33.21
Merged-chr2-84715692-2	chr2	84715607	84715807	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-543.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	55.32	43.26	43.35	47.06	62.18	103.79	55.14	74.24	108.57	105.94	171.85	73.3
Merged-chr9-111604206-1	chr9	111604106	111604306	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 4 of 10)	intron (NM_016853, intron 4 of 10)	86142.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.0	2.52	1.14	0.8	0.82	1.25	0.0	0.56	17.11	17.07	16.08	7.52
Merged-chr3-148322131-3	chr3	148322035	148322235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	632500.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	30.69	23.64	29.09	19.31	38.05	63.66	36.87	29.66	42.68	28.62	35.68	14.72
Merged-chr1-167246469-3	chr1	167246382	167246582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	L1M4|LINE|L1	38645.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	18.17	12.58	25.67	25.74	46.23	26.03	25.24	35.5	29.31	20.59	30.65	15.66
Merged-chr10-128194364-3	chr10	128194263	128194463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285779)	promoter-TSS (NM_001285779)	-272.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	33.52	36.47	38.79	40.22	49.91	72.44	25.24	56.61	71.2	64.77	112.56	62.34
Merged-chr11-74839133-3	chr11	74839027	74839227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8203.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	47.65	59.61	62.75	29.76	67.91	91.56	35.87	41.75	71.0	74.81	56.28	43.23
Merged-chr18-4375666-3	chr18	4375589	4375789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361009)	promoter-TSS (NM_001361009)	97.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	35.53	43.01	45.64	49.87	45.82	61.46	44.18	39.39	49.96	50.21	59.8	38.22
Merged-chr2-180967186-3	chr2	180967105	180967305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-20.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	45.23	29.18	56.48	37.4	60.96	61.46	45.51	57.17	61.37	63.27	80.9	51.69
Merged-chr2-94406517-4	chr2	94406414	94406614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	175.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	40.78	63.64	27.95	63.95	51.55	76.51	67.76	41.72	62.15	76.82	50.75	46.36
Merged-chr7-31127060-3	chr7	31126931	31127131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-8.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	35.53	34.21	26.24	16.09	30.68	31.36	20.93	32.22	38.55	44.19	35.68	28.51
Merged-chr2-103761282-3	chr2	103761181	103761381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153126)	promoter-TSS (NM_153126)	-11.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	136.89	131.55	142.04	134.33	139.1	158.35	103.31	140.13	185.48	176.24	185.92	134.39
Merged-chr4-6355513-3	chr4	6355427	6355627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10153.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	65.82	40.24	54.19	28.15	84.28	118.53	84.37	80.44	99.13	89.88	72.36	30.39
Merged-chr18-75502802-3	chr18	75502698	75502898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11847.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	18.57	27.17	44.5	36.6	28.64	19.76	55.8	57.31	72.38	48.2	94.47	50.75
Merged-chr5-142401459-3	chr5	142401367	142401567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199068)	promoter-TSS (NM_199068)	-30.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	30.28	23.39	16.54	17.7	27.0	24.77	12.95	22.85	31.47	23.1	34.17	14.1
Merged-chr11-51756550-3	chr11	51756464	51756664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175255, exon 1 of 23)	5' UTR (NM_175255, exon 1 of 23)	270.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	193.42	180.09	163.72	138.76	191.87	260.58	121.91	140.92	181.94	182.77	202.0	95.55
Merged-chr2-163719422-3	chr2	163719321	163719521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25384.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	24.63	31.94	43.35	23.73	33.14	38.88	30.89	48.79	44.25	40.17	41.71	26.31
Merged-chrX-139610656-3	chrX	139610581	139610781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023270)	promoter-TSS (NM_023270)	61.0	NM_023270	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	27.86	34.46	47.92	46.25	30.68	41.71	37.54	39.76	44.25	17.07	67.84	27.25
Merged-chr18-58555689-3	chr18	58555588	58555788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081072)	promoter-TSS (NM_001081072)	-552.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	39.17	34.96	36.51	34.99	40.91	58.32	42.85	55.15	31.86	32.64	36.18	26.31
Merged-chr6-119848252-3	chr6	119848143	119848343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053204)	promoter-TSS (NM_053204)	50.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	86.41	83.26	94.13	88.08	93.68	90.62	68.43	58.26	71.99	87.87	76.38	40.72
Merged-chr5-3461652-3	chr5	3461545	3461745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82188.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	39.57	33.7	53.62	48.67	52.77	37.0	28.57	60.53	47.4	53.22	62.81	38.53
Merged-chr8-111937324-3	chr8	111937231	111937431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-3372.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	35.94	20.37	28.52	35.39	34.36	26.34	19.27	36.48	28.91	26.61	50.75	28.51
Merged-chr1-118459611-3	chr1	118459511	118459711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-346.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	93.68	70.68	68.45	53.89	98.59	115.39	65.11	84.7	112.9	79.83	114.57	37.28
Merged-chr5-90894432-3	chr5	90894347	90894547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3202.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	64.61	42.01	55.9	72.4	67.5	38.57	66.77	79.74	57.43	48.2	103.51	30.39
Merged-chr3-5576310-3	chr3	5576207	5576407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-59.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	287.91	249.77	295.5	340.66	298.24	322.04	286.0	393.03	458.48	405.7	554.74	245.29
Merged-chr9-83546511-3	chr9	83546406	83546606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	44.82	31.44	39.36	37.81	40.91	70.87	51.15	72.76	72.97	46.7	85.92	40.72
Merged-chr12-100089449-3	chr12	100089323	100089523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22908.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	69.45	35.72	86.71	98.14	83.46	79.33	99.65	103.4	59.2	70.29	136.68	68.61
Merged-chr10-63386594-3	chr10	63386503	63386703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	40.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	78.34	58.86	63.32	61.54	72.41	92.5	65.11	73.82	91.07	99.42	110.04	34.46
Merged-chrX-101254147-3	chrX	101254041	101254241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018789)	promoter-TSS (NM_018789)	-387.0	NM_018789	54601.0	Mm.240299	NM_018789	ENSMUSG00000042903	Foxo4	Afxh|Mllt7|afx	forkhead box O4	protein-coding	15.75	18.36	40.5	14.48	28.23	37.32	26.24	38.92	32.06	31.63	47.23	26.31
Merged-chr5-149089120-3	chr5	149089022	149089222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36065.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	50.88	30.18	81.0	68.78	42.55	44.21	60.46	79.99	73.36	57.24	111.05	53.57
Merged-chr2-90679282-3	chr2	90679211	90679411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021512, exon 2 of 37)	5' UTR (NM_021512, exon 2 of 37)	2096.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	47.24	41.25	27.38	38.21	41.73	51.43	35.87	40.93	52.32	47.2	45.73	36.34
Merged-chr8-69717062-3	chr8	69716974	69717174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039965)	promoter-TSS (NM_001039965)	-172.0	NM_001039965	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	270.95	243.23	294.93	306.88	301.51	388.2	252.12	329.05	348.33	363.02	436.15	234.01
Merged-chr6-59024526-3	chr6	59024409	59024609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153574)	promoter-TSS (NM_153574)	-7.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	27.86	25.15	38.22	38.21	38.46	43.9	44.18	60.34	48.98	38.66	59.8	31.01
Merged-chrX-160138409-3	chrX	160138306	160138506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008810)	promoter-TSS (NM_008810)	24.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	60.17	57.1	38.22	60.73	54.41	59.58	63.44	66.95	65.1	68.79	103.51	46.36
Merged-chr15-64311933-3	chr15	64311859	64312059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	714.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	34.73	39.24	27.38	35.39	30.68	44.84	43.18	32.3	41.3	38.16	52.76	22.24
Merged-chr10-10557485-3	chr10	10557380	10557580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	URR1B|DNA|hAT-Charlie	727.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	39.17	50.56	32.52	32.18	39.27	75.88	46.5	24.81	52.32	56.24	42.21	16.92
Merged-chr18-82855825-3	chr18	82855724	82855924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-73.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	55.72	37.48	70.74	73.6	42.55	42.96	48.5	69.56	60.38	64.77	75.37	48.56
Merged-chr9-66895522-3	chr9	66895424	66895624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24181.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	32.3	19.12	25.67	20.11	16.77	14.11	22.59	25.93	22.82	34.65	29.65	15.35
Merged-chr13-113484340-3	chr13	113484227	113484427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	18517.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	41.19	35.97	34.8	14.08	44.18	82.78	39.53	43.12	69.04	69.79	85.92	34.77
Merged-chr2-167765359-3	chr2	167765258	167765458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74181.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	91.26	60.87	112.95	63.55	134.19	116.96	112.27	153.53	126.67	110.46	161.8	114.66
Merged-chr14-47178022-3	chr14	47177912	47178112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	11401.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	36.34	42.26	64.46	55.91	50.32	49.54	77.4	85.54	51.34	41.67	81.9	44.8
Merged-chr17-12170442-1	chr17	12170342	12170542	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51158.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	0.0	0.82	0.0	0.33	0.0	22.23	28.62	25.12	4.39
Merged-chr8-56292507-3	chr8	56292341	56292541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2111.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	29.48	27.17	55.9	45.45	105.14	80.9	120.58	123.48	62.15	63.77	104.01	59.21
Merged-chr7-45238992-3	chr7	45238904	45239104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007645)	promoter-TSS (NM_007645)	111.0	NM_001290802	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	23.82	16.6	22.82	22.52	21.27	33.55	17.94	17.27	27.93	18.58	25.12	31.01
Merged-chr10-127590426-3	chr10	127590341	127590541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 12 of 88)	intron (NM_008512, intron 12 of 88)	30707.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	15.75	14.09	17.11	25.34	34.36	22.58	29.56	38.36	30.49	20.08	42.21	21.62
Merged-chr8-83748075-3	chr8	83747986	83748186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6775.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	98.53	68.67	111.81	71.59	105.14	101.6	62.12	101.24	204.75	172.72	293.45	92.1
Merged-chr10-13983021-3	chr10	13982914	13983114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16635.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	158.69	121.24	166.57	159.67	138.28	190.34	156.12	217.18	270.64	217.41	344.7	165.09
Merged-chr7-45522031-3	chr7	45521935	45522135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008654)	TTS (NM_008654)	4233.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	86.82	69.17	81.0	89.29	87.96	107.56	69.76	95.3	93.23	77.32	144.71	61.09
Merged-chr3-87617509-4	chr3	87617360	87617560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-99.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	25.44	14.34	26.81	12.47	25.36	28.22	14.28	23.92	42.68	39.16	60.3	12.22
Merged-chr17-17887953-3	chr17	17887846	17888046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	122.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	12.52	19.87	15.97	22.12	17.18	31.36	15.28	22.51	27.34	24.1	32.16	15.35
Merged-chr9-40801147-6	chr9	40801039	40801239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-134.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	250.76	279.95	220.2	255.8	263.05	377.54	230.86	260.69	380.39	414.24	454.75	221.79
Merged-chr5-110808326-3	chr5	110808231	110808431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347394, intron 3 of 27)	intron (NM_001347394, intron 3 of 27)	1750.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	62.59	81.75	36.51	77.62	82.23	95.64	72.41	62.86	89.49	103.43	95.97	54.51
Merged-chr19-6364507-3	chr19	6364388	6364588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360393, intron 1 of 11)	CpG	798.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	29.48	47.54	34.23	33.38	25.36	50.17	17.27	19.74	54.68	70.8	41.2	48.56
Merged-chr7-13038187-3	chr7	13038052	13038252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	123.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	88.43	108.41	92.41	92.1	92.46	106.3	103.97	70.54	74.15	109.96	85.42	51.38
Merged-chr4-101265279-3	chr4	101265188	101265388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-6.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	156.27	162.99	99.83	146.8	152.6	198.81	105.96	159.73	202.39	195.82	257.27	106.2
Merged-chr17-87284000-3	chr17	87283919	87284119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1133.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	33.92	49.05	40.5	29.36	49.91	65.22	37.2	42.5	56.45	43.18	59.29	30.07
Merged-chr15-73632453-3	chr15	73632364	73632564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7720.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	42.8	27.67	70.17	71.59	48.27	38.88	51.15	81.31	36.19	22.59	51.25	25.69
Merged-chr11-68939807-3	chr11	68939698	68939898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-12717.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	63.8	52.07	50.2	61.13	64.64	54.56	32.88	50.07	63.92	75.82	63.82	42.92
Merged-chr7-3665550-3	chr7	3665438	3665638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181820)	TTS (NM_181820)	302.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	158.29	130.04	169.43	164.5	179.19	176.23	141.17	175.32	162.86	155.65	192.45	110.58
Merged-chr4-145276758-3	chr4	145276648	145276848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 11 of 12)	intron (NM_009401, intron 11 of 12)	-29878.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	33.52	26.66	31.38	23.33	63.41	62.09	42.52	50.33	57.24	70.8	63.82	36.65
Merged-chr11-54534051-3	chr11	54533948	54534148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 1 of 28)	RLTR14|LTR|ERV1	11203.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	17.36	22.64	27.95	22.12	21.68	28.85	18.93	28.26	31.08	17.07	24.12	14.41
Merged-chr9-32501057-3	chr9	32500952	32501152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	40400.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	75.11	80.49	87.28	90.49	50.73	79.33	47.5	85.74	58.61	49.21	76.38	57.64
Merged-chr6-89422177-3	chr6	89422086	89422286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59573.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	77.93	80.74	81.58	93.71	81.41	104.42	76.73	78.9	123.32	133.56	123.11	67.98
Merged-chr16-24640466-3	chr16	24640371	24640571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-81384.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	20.59	16.35	20.54	15.69	20.46	33.55	12.29	24.5	28.13	34.14	26.13	16.6
Merged-chr5-35757810-3	chr5	35757686	35757886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-94.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	80.36	66.91	110.1	93.31	104.73	138.29	70.42	119.69	129.81	115.48	157.28	88.97
Merged-chr1-171247206-3	chr1	171247101	171247301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-79.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	111.85	121.49	135.77	154.04	84.68	100.03	54.81	64.85	142.99	125.53	137.68	78.0
Merged-chr5-99339874-3	chr5	99339756	99339956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-86929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	131.64	168.52	236.17	226.44	149.73	183.75	186.35	236.92	181.15	180.76	250.74	157.26
Merged-chr17-23983594-3	chr17	23983481	23983681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8351.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	41.99	34.96	48.49	39.42	32.73	45.15	24.91	57.42	42.88	23.6	47.23	36.65
Merged-chr3-103914387-3	chr3	103914241	103914441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356556, exon 1 of 8)	5' UTR (NM_001356556, exon 1 of 8)	221.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	148.19	132.56	151.74	172.54	184.51	176.23	173.39	185.19	176.63	207.87	238.18	113.72
Merged-chr15-4026594-3	chr15	4026489	4026689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	161.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	100.14	93.82	91.27	129.11	102.68	99.09	93.67	117.11	89.49	98.91	167.83	81.14
Merged-chr9-31211889-3	chr9	31211795	31211995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-47.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	169.19	179.09	164.29	188.63	188.6	222.64	157.12	208.8	221.67	209.38	272.35	134.7
Merged-chr5-124024979-2	chr5	124024881	124025081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	L2b|LINE|L2	7279.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	16.96	11.32	16.54	11.66	23.73	17.56	12.29	24.31	11.8	12.05	8.54	6.58
Merged-chr6-71543887-3	chr6	71543772	71543972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	20.0	NM_025783	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	67.43	71.94	61.61	49.07	87.55	116.02	58.13	56.86	120.57	91.38	131.15	72.05
Merged-chr15-38078948-3	chr15	38078854	38079054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081359)	promoter-TSS (NM_001081359)	-100.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	144.56	140.6	121.51	140.77	179.6	217.93	143.83	178.68	241.73	222.93	333.15	114.03
Merged-chr11-4594879-3	chr11	4594778	4594978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-63.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	75.51	53.58	100.4	54.3	69.96	99.72	58.46	63.36	92.84	92.39	107.53	42.29
Merged-chr5-99983880-3	chr5	99983768	99983968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4930.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	29.48	40.24	41.64	58.32	37.23	50.8	46.17	60.9	50.55	50.71	54.27	29.76
Merged-chr15-78581598-3	chr15	78581491	78581691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-2.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	21.8	17.61	27.95	24.94	24.96	33.24	10.63	27.62	34.42	22.09	28.14	20.05
Merged-chr19-53903252-3	chr19	53903146	53903346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	-105.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	140.52	134.82	175.13	125.89	168.96	161.8	120.91	158.86	243.11	223.44	273.35	123.11
Merged-chr2-6731020-3	chr2	6730920	6731120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-9358.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	17.36	13.33	35.94	29.36	29.86	17.56	15.94	22.21	19.67	21.09	32.16	14.41
Merged-chr15-80255569-2	chr15	80255457	80255657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	373.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	64.2	70.93	47.92	32.58	48.68	86.55	26.57	25.09	56.06	57.74	36.68	26.0
Merged-chr2-150673997-3	chr2	150673885	150674085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5745.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	89.24	62.88	108.96	104.57	93.68	89.68	129.21	151.07	91.85	68.79	103.51	65.47
Merged-chr7-123330735-3	chr7	123330631	123330831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	39184.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	37.55	34.46	41.07	37.4	36.82	35.75	34.88	52.82	43.07	31.63	42.21	30.7
Merged-chr14-47515231-3	chr14	47515154	47515354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42693.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	32.71	25.66	41.07	24.94	36.41	34.81	25.58	31.99	35.21	30.63	62.31	18.17
Merged-chr9-45961964-3	chr9	45961849	45962049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6700.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	62.59	59.61	65.03	76.82	64.64	67.1	65.44	65.16	68.45	66.28	65.83	48.24
Merged-chr6-89257074-3	chr6	89256971	89257171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28654.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	50.07	58.1	53.62	53.09	57.68	56.76	40.52	52.07	64.91	77.83	67.84	86.15
Merged-chr7-56050114-3	chr7	56050014	56050214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-41.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	319.81	347.86	296.64	365.2	310.51	366.88	345.46	432.25	342.63	375.58	399.98	223.67
Merged-chr10-24634448-3	chr10	24634351	24634551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39009.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	168.79	173.3	180.26	129.91	195.96	238.0	159.77	218.97	209.87	163.69	155.27	116.22
Merged-chr7-136321911-1	chr7	136321811	136322011	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27504.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	2.42	0.0	5.7	8.85	1.64	3.76	8.97	10.93	12.59	3.51	11.56	3.45
Merged-chr13-83074426-3	chr13	83074318	83074518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-376085.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	82.37	55.59	51.34	51.88	62.59	78.08	50.16	91.63	88.12	77.83	82.91	31.33
Merged-chr8-13661042-1	chr8	13660942	13661142	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	16545.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.02	2.52	6.28	5.63	9.82	3.76	5.31	10.49	2.95	3.51	0.0	3.45
Merged-chr14-60784569-3	chr14	60784482	60784682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040642)	promoter-TSS (NR_040642)	16.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	41.19	31.19	43.35	34.99	41.73	45.15	18.93	45.5	29.5	43.68	32.66	31.33
Merged-chr8-73353634-3	chr8	73353536	73353736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-96.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	185.34	183.62	208.22	206.33	222.55	229.22	213.25	235.18	274.58	263.61	393.44	157.57
Merged-chr19-8723310-3	chr19	8723206	8723406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002896)	promoter-TSS (NR_002896)	63.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	198.67	210.78	147.18	146.4	166.51	235.18	128.22	112.4	218.52	245.03	212.55	102.12
Merged-chr12-84195339-3	chr12	84195249	84195449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1334.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	62.18	60.62	61.04	34.59	45.82	66.48	35.54	32.38	75.92	79.83	63.82	39.78
Merged-chr8-11464343-3	chr8	11464243	11464443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-13586.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	267.72	238.95	261.27	276.31	217.64	290.37	293.97	291.11	306.44	365.53	424.6	222.42
Merged-chr14-57424101-3	chr14	57424005	57424205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	34.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	106.2	83.0	97.55	100.95	131.32	125.43	86.03	129.67	117.82	105.44	201.5	79.88
Merged-chr10-14117186-3	chr10	14117085	14117285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	150806.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	27.05	41.5	41.07	51.48	32.32	47.98	43.51	42.48	40.12	30.63	45.73	36.97
Merged-chr9-75409406-3	chr9	75409307	75409507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-48.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	44.01	45.53	48.49	28.56	59.73	86.23	46.5	69.93	94.8	80.84	107.53	55.76
Merged-chr10-117866920-3	chr10	117866848	117867048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20974.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	27.05	33.2	21.11	50.27	36.0	53.31	25.24	34.07	35.99	53.73	38.69	31.33
Merged-chr12-79633625-3	chr12	79633507	79633707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	291126.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	75.11	69.17	65.6	54.7	59.73	84.04	48.5	61.12	55.27	42.18	56.78	40.72
Merged-chr2-129297287-3	chr2	129297166	129297366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	-54.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	157.88	183.62	166.57	152.43	185.32	244.9	122.9	157.74	219.5	239.0	239.18	131.26
Merged-chr9-21073527-3	chr9	21073428	21073628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039824)	promoter-TSS (NM_001039824)	-14.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	65.01	40.24	55.33	34.19	60.96	63.34	37.87	52.51	79.07	80.34	79.89	52.0
Merged-chrX-151520537-3	chrX	151520422	151520622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177201)	promoter-TSS (NM_177201)	-150.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	89.64	90.55	85.57	94.11	101.87	130.45	85.04	99.67	108.97	112.97	128.64	59.83
Merged-chr6-84752963-3	chr6	84752850	84753050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-159042.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	41.59	31.44	46.78	63.15	48.68	35.43	43.18	49.63	47.8	50.71	56.28	46.68
Merged-chr19-12801253-3	chr19	12801143	12801343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	2664.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	62.18	39.74	87.28	45.45	53.59	60.21	33.88	68.64	67.86	68.29	56.78	37.28
Merged-chr18-76241415-3	chr18	76241294	76241494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-307.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	64.2	90.3	75.87	87.68	83.46	94.39	98.65	82.71	143.78	136.07	182.4	90.85
Merged-chr11-58302446-6	chr11	58302404	58302604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	-4565.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	22.21	22.89	15.4	19.31	24.55	31.04	12.29	21.62	22.03	17.57	28.14	20.99
Merged-chr19-7557447-3	chr19	7557370	7557570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139269)	promoter-TSS (NM_139269)	11.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	30.28	27.42	37.65	23.73	21.27	26.03	22.59	25.71	16.72	27.62	32.16	18.17
Merged-chr1-161500955-3	chr1	161500849	161501049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	6292.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	54.11	62.38	58.76	66.36	75.68	57.07	58.46	65.02	91.85	84.86	87.93	55.76
Merged-chr12-85486140-3	chr12	85486050	85486250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	194.23	152.43	215.06	178.98	156.28	217.93	136.19	156.14	223.44	222.43	303.0	135.64
Merged-chr14-20640962-3	chr14	20640872	20641072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15568.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	73.09	65.9	82.15	71.19	85.5	104.11	70.09	65.92	126.08	92.39	103.01	62.97
Merged-chr11-70540121-3	chr11	70540037	70540237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	73.0	NM_001361935	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	92.47	68.92	77.01	74.81	97.78	103.48	55.14	80.64	82.41	84.35	109.54	49.18
Merged-chr2-30270348-3	chr2	30270251	30270451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252571, intron 2 of 9)	intron (NM_001252571, intron 2 of 9)	3532.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	89.64	56.09	91.27	87.68	91.64	115.08	75.73	91.15	71.79	90.88	95.47	50.44
Merged-chr2-3424669-3	chr2	3424563	3424763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	532.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	35.53	41.0	47.92	18.5	45.82	66.16	24.25	27.11	48.58	51.21	62.81	23.18
Merged-chr10-22376625-3	chr10	22376521	22376721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR43C|LTR|ERVK	14727.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	67.43	35.97	69.6	53.09	71.59	63.34	77.06	65.1	47.4	43.18	79.39	35.4
Merged-chr1-152528961-3	chr1	152528884	152529084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 14 of 17)	L1MEd|LINE|L1	96233.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	132.44	110.67	117.51	110.6	138.28	184.38	98.32	109.88	154.79	138.58	166.32	86.46
Merged-chr11-90225438-3	chr11	90225347	90225547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	122.35	72.69	100.97	98.94	118.64	136.4	106.63	85.51	123.32	115.48	125.62	61.4
Merged-chr12-111437335-2	chr12	111437244	111437444	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5317.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	72.28	41.0	42.78	57.11	57.27	61.46	66.77	76.29	112.11	87.87	79.39	60.15
Merged-chr2-58978279-3	chr2	58978158	58978358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	182425.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	54.11	44.02	45.64	80.04	64.23	60.21	83.04	86.72	55.66	67.28	61.3	55.13
Merged-chr2-32757183-3	chr2	32757112	32757312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045485)	promoter-TSS (NR_045485)	-22.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	91.26	116.46	98.12	74.81	102.68	140.17	61.12	80.3	124.7	130.55	128.64	66.1
Merged-chr2-148889150-3	chr2	148889056	148889256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13644.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	28.27	23.14	23.39	36.6	44.59	23.52	18.6	32.33	32.85	27.62	33.67	16.6
Merged-chr9-57261610-3	chr9	57261494	57261694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028820, intron 1 of 2)	CpG	1005.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	31.09	21.63	27.38	16.09	18.82	33.87	21.59	33.14	25.77	21.59	32.16	24.12
Merged-chr17-23726893-1	chr17	23726793	23726993	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023058, intron 1 of 7)	intron (NM_023058, intron 1 of 7)	557.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	7.67	6.29	2.85	3.22	7.36	7.53	5.31	6.48	33.04	21.09	39.7	20.99
Merged-chr16-35869803-1	chr16	35869703	35869903	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1579.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.44	17.86	3.42	1.61	2.45	18.81	2.33	1.71	17.11	20.59	18.09	7.83
Merged-chr10-63430071-3	chr10	63429978	63430178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-20.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	39.57	15.59	15.4	15.69	20.05	28.22	13.62	22.85	30.09	24.1	40.7	21.93
Merged-chr2-77284596-3	chr2	77284485	77284685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3993.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	105.39	119.73	70.17	56.31	99.82	111.32	48.83	53.07	99.52	102.93	104.52	48.24
Merged-chr8-70699636-1	chr8	70699536	70699736	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	1897.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	77.93	73.19	54.19	50.27	45.82	63.66	28.9	29.02	72.58	73.31	83.41	35.71
Merged-chr7-142458130-3	chr7	142458015	142458215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2697.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	23.82	19.62	33.66	21.32	17.18	12.54	18.6	14.27	40.32	49.71	52.26	33.21
Merged-chr3-94995012-3	chr3	94994907	94995107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293715, intron 5 of 11)	L2c|LINE|L2	-9161.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	25.44	20.12	32.52	15.69	15.96	26.65	24.58	30.08	25.18	29.12	35.68	18.17
Merged-chr6-125042196-3	chr6	125042090	125042290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	2342.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	40.38	46.28	43.35	18.9	35.59	71.18	26.57	32.5	69.23	43.68	48.24	41.98
Merged-chr2-140784822-3	chr2	140784728	140784928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	Lx5|LINE|L1	-113352.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	40.38	48.29	99.26	65.56	71.59	88.74	55.14	69.65	82.41	90.38	112.56	48.87
Merged-chr18-81571741-3	chr18	81571646	81571846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	420334.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	34.73	38.48	64.46	68.37	36.0	19.44	36.54	45.84	51.34	36.65	58.79	31.64
Merged-chr4-136125722-3	chr4	136125631	136125831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18091.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	58.15	45.28	50.2	50.68	58.91	63.34	49.83	68.72	80.25	78.33	102.51	48.24
Merged-chr9-15045443-3	chr9	15045345	15045545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019482)	promoter-TSS (NM_019482)	33.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	48.46	33.7	30.8	35.8	53.59	54.25	51.82	49.29	51.14	47.2	48.74	32.27
Merged-chr12-110778043-3	chr12	110777938	110778138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	40106.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	40.78	17.61	26.81	36.2	48.68	33.24	21.26	38.3	34.81	14.56	41.2	19.11
Merged-chr15-13393465-3	chr15	13393378	13393578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219803.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	56.53	46.28	54.76	75.61	79.78	71.49	78.72	117.87	90.48	89.88	111.55	59.21
Merged-chr9-25252504-3	chr9	25252401	25252601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	62.0	NM_001205367	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	161.52	224.61	212.78	190.64	217.64	223.26	197.31	226.23	258.84	238.0	266.82	133.76
Merged-chr16-20098150-3	chr16	20098062	20098262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029436, intron 1 of 7)	CpG	608.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	151.83	154.94	128.35	134.74	169.78	160.55	153.46	206.19	179.18	166.2	226.12	111.21
Merged-chr2-103483550-3	chr2	103483445	103483645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	1608.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	12.52	18.11	30.23	19.31	23.73	21.95	21.92	20.24	29.9	27.11	34.17	19.74
Merged-chr11-98438953-3	chr11	98438847	98439047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025559)	promoter-TSS (NM_025559)	41.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	62.59	73.45	31.38	47.06	47.05	69.93	33.22	50.72	47.6	61.26	55.78	34.77
Merged-chr12-54862924-3	chr12	54862797	54862997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-20.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	52.9	52.32	58.76	85.27	65.46	68.05	72.08	81.65	60.58	70.8	85.42	49.5
Merged-chr15-38477100-3	chr15	38477003	38477203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	13444.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	33.52	34.96	34.23	44.24	58.5	72.44	57.8	75.73	44.25	49.71	51.76	27.25
Merged-chr1-151344882-1	chr1	151344782	151344982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039511, intron 1 of 7)	CpG	384.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	19.38	18.36	7.42	10.46	13.5	11.6	6.64	5.13	21.05	7.53	11.05	10.96
Merged-chr9-21169028-3	chr9	21168925	21169125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	3311.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	31.5	15.59	19.4	7.24	21.27	27.91	9.3	14.44	20.85	37.16	24.62	21.93
Merged-chr4-9771428-3	chr4	9771311	9771511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	826.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	117.1	112.18	150.03	150.42	47.87	43.9	59.13	63.48	69.04	55.23	85.42	49.81
Merged-chr13-74260195-5	chr13	74260086	74260286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317351, intron 2 of 9)	CpG	32145.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	21.4	18.61	17.11	43.04	24.96	18.81	33.55	29.1	33.04	31.13	43.72	30.39
Merged-chr7-27731418-3	chr7	27731317	27731517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029531)	promoter-TSS (NM_029531)	8.0	NM_009560	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	33.52	39.99	35.37	65.56	40.09	52.37	36.54	44.58	36.58	37.16	46.73	34.77
Merged-chr1-152805066-3	chr1	152804973	152805173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	4920.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	14.94	15.34	18.83	24.53	19.64	19.44	19.93	26.36	27.14	26.11	44.72	15.66
Merged-chr7-110840532-3	chr7	110840417	110840617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025999, intron 1 of 5)	L3|LINE|CR1	3864.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	82.37	68.67	101.54	90.09	90.82	94.07	56.47	87.03	86.54	69.29	90.45	66.41
Merged-chr2-60383401-3	chr2	60383287	60383487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013825)	promoter-TSS (NM_013825)	-156.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	31.9	15.34	23.96	40.62	45.82	26.65	42.19	39.42	29.7	25.11	30.65	13.78
Merged-chr2-160210694-3	chr2	160210579	160210779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116815.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	62.18	54.83	42.78	57.51	58.91	60.83	47.5	61.35	72.38	54.73	85.92	46.99
Merged-chr18-23882316-2	chr18	23882216	23882416	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-72372.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	3.02	9.7	3.62	69.96	52.68	60.46	98.69	49.37	43.18	43.72	35.09
Merged-chr14-75754602-3	chr14	75754505	75754705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177381)	promoter-TSS (NM_177381)	-112.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	91.66	96.84	66.17	96.53	110.05	105.05	68.1	100.63	127.45	156.66	164.81	87.09
Merged-chr2-49743788-3	chr2	49743691	49743891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 19 of 25)	MTD|LTR|ERVL-MaLR	-43895.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	39.57	35.47	51.91	59.93	40.5	31.36	33.22	57.39	57.24	36.15	56.28	48.56
Merged-chr4-63207107-1	chr4	63207007	63207207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-8305.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.04	2.26	17.11	14.88	3.27	7.21	1.33	5.83	4.52	1.51	6.03	5.33
Merged-chr5-148452970-3	chr5	148452868	148453068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53064.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	56.94	58.35	85.0	59.53	27.0	45.78	50.49	51.67	59.79	46.7	55.78	31.33
Merged-chrX-98937245-3	chrX	98937164	98937364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207633)	promoter-TSS (NM_207633)	-517.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	78.34	89.54	71.88	115.43	92.46	77.14	82.05	64.15	120.37	127.53	121.1	57.95
Merged-chr10-111160375-3	chr10	111160275	111160475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4427.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	26.65	35.47	33.66	12.87	19.23	53.62	21.59	25.99	22.42	17.07	15.58	12.22
Merged-chr2-129593382-3	chr2	129593295	129593495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291021, exon 1 of 6)	5' UTR (NM_001291021, exon 1 of 6)	226.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	58.95	61.12	75.3	39.01	74.87	118.53	48.83	46.21	73.17	82.35	52.26	36.97
Merged-chr4-45410370-3	chr4	45410199	45410399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1533.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	33.92	15.34	21.68	18.9	23.73	32.3	24.58	16.71	21.44	26.11	25.12	20.36
Merged-chr2-163765139-2	chr2	163765050	163765250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14911.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	65.41	61.88	66.74	61.94	55.23	68.36	47.17	69.95	7.87	2.51	6.53	1.25
Merged-chr8-123518822-3	chr8	123518720	123518920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018855)	promoter-TSS (NM_018855)	-15.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	109.83	92.56	100.4	92.51	104.73	120.41	87.69	74.41	133.94	133.56	128.64	75.81
Merged-chr11-114968955-3	chr11	114968866	114969066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8549.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	106.2	79.73	116.37	113.42	90.0	118.84	94.67	68.94	64.71	63.77	98.49	50.44
Merged-chr2-90940381-3	chr2	90940281	90940481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-16.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	49.67	48.54	59.33	34.59	70.77	72.12	33.55	62.13	61.76	61.76	70.35	32.58
Merged-chr9-18468262-3	chr9	18468153	18468353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028160, intron 4 of 7)	intron (NM_028160, intron 4 of 7)	5306.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	29.48	29.18	38.79	28.96	34.77	46.72	39.53	68.78	40.52	33.14	54.77	37.91
Merged-chr2-157077721-3	chr2	157077622	157077822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1543.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	148.6	107.4	140.9	97.33	98.18	150.51	78.39	84.9	109.16	97.41	118.08	60.77
Merged-chr9-21131355-3	chr9	21131249	21131449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-74.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	130.83	126.02	173.99	150.42	132.55	168.39	119.91	171.76	161.68	177.24	176.37	94.29
Merged-chr16-33347334-3	chr16	33347221	33347421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33415.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	24.23	28.93	25.1	28.15	39.27	40.14	20.59	23.83	38.16	40.67	54.27	26.94
Merged-chr9-13299380-3	chr9	13299272	13299472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52416.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	32.71	16.1	22.82	19.71	33.14	23.83	16.94	28.68	29.7	22.59	39.7	16.92
Merged-chr17-73949784-3	chr17	73949664	73949864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	432.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	33.92	16.6	17.68	23.73	31.09	32.93	21.92	44.16	27.93	37.66	23.11	24.43
Merged-chr6-43655054-3	chr6	43654958	43655158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	11220.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	24.63	11.82	21.68	31.37	45.41	26.03	35.54	57.67	29.9	29.12	37.18	15.66
Merged-chr19-55866038-3	chr19	55865933	55866133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-29288.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	18.98	19.62	26.81	31.77	21.68	27.91	19.27	33.48	27.34	20.59	30.15	23.81
Merged-chr3-135826513-2	chr3	135826425	135826625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001135150, exon 2 of 9)	exon (NM_001135150, exon 2 of 9)	735.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	13.73	17.1	20.54	13.67	14.73	15.05	13.62	15.28	8.06	10.04	12.06	5.01
Merged-chr10-93261312-3	chr10	93261216	93261416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49843.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	59.36	53.07	61.04	107.79	78.96	62.09	95.0	100.63	39.73	45.19	71.86	42.92
Merged-chr11-99179097-3	chr11	99178995	99179195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-24018.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	36.75	32.2	54.19	39.42	39.27	57.07	46.84	44.07	51.93	34.65	53.26	26.63
Merged-chr1-183669861-3	chr1	183669776	183669976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79101.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	13.33	22.64	44.5	26.14	38.05	26.65	14.62	48.0	50.16	43.18	56.78	37.28
Merged-chr17-29363276-3	chr17	29363188	29363388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	2374.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	34.73	21.63	46.21	18.5	22.5	40.76	16.61	21.56	46.81	32.13	40.2	26.0
Merged-chr8-70631615-3	chr8	70631523	70631723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330687, exon 2 of 3)	5' UTR (NM_001330687, exon 2 of 3)	472.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	72.28	46.03	65.03	48.67	20.05	46.41	34.55	40.77	68.45	52.22	63.82	26.0
Merged-chr11-98027054-3	chr11	98026965	98027165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009078, intron 1 of 5)	CpG	141.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	26.25	36.72	9.13	24.94	33.96	47.98	31.56	22.4	38.94	47.2	38.19	26.63
Merged-chr14-20546212-3	chr14	20546109	20546309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-84.0	NR_033571	75602.0	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	85.2	55.34	62.18	65.96	86.73	86.86	77.73	82.99	91.26	97.41	153.26	68.29
Merged-chr4-95775716-1	chr4	95775616	95775816	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191319.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.63	2.52	5.13	5.23	11.05	3.14	2.33	10.71	2.75	5.02	3.01	2.19
Merged-chr16-84972127-3	chr16	84972031	84972231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045889)	promoter-TSS (NR_045889)	-80.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	76.72	55.34	85.57	53.49	53.59	94.39	69.42	58.68	88.71	68.79	87.43	36.34
Merged-chr16-20516962-3	chr16	20516869	20517069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347176)	promoter-TSS (NM_001347176)	-17.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	92.47	81.5	92.98	86.88	98.18	111.63	74.74	123.2	95.2	63.27	138.69	54.82
Merged-chr11-118135436-3	chr11	118135329	118135529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6210.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	19.38	13.83	21.11	18.1	41.32	28.85	21.92	29.02	29.31	14.56	42.21	13.16
Merged-chr13-47251300-3	chr13	47251208	47251408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	57305.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	17.77	17.1	46.21	36.6	29.86	24.46	29.23	48.87	23.21	24.6	25.12	26.94
Merged-chr3-116808744-3	chr3	116808649	116808849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-583.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	20.59	25.66	36.51	35.8	34.36	32.3	30.23	39.93	54.29	24.6	59.8	24.43
Merged-chr1-64308701-3	chr1	64308596	64308796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-187307.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	34.32	18.36	58.76	55.5	54.0	42.33	54.48	76.23	47.8	37.16	65.32	34.46
Merged-chr17-7939851-3	chr17	7939746	7939946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5768.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	23.02	33.45	25.67	24.13	32.73	45.15	14.28	30.48	41.3	28.12	29.14	26.94
Merged-chr7-45801584-3	chr7	45801483	45801683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005511, intron 15 of 15)	intron (NM_001005511, intron 15 of 15)	12733.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	31.9	28.42	19.97	26.55	27.41	31.98	17.94	21.34	36.19	33.64	30.15	26.63
Merged-chr2-167864429-3	chr2	167864321	167864521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67906.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	61.78	37.73	65.03	53.09	58.5	63.66	44.18	52.77	64.71	64.27	81.4	50.75
Merged-chr9-55296524-3	chr9	55296407	55296607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-12882.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	32.71	25.91	29.66	18.5	66.68	113.51	51.49	44.02	64.71	91.89	61.3	37.59
Merged-chr16-20693242-3	chr16	20693105	20693305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1852.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	35.53	32.95	29.09	22.93	33.96	58.01	26.57	37.04	48.98	42.18	53.26	27.25
Merged-chr11-23067866-3	chr11	23067754	23067954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	54467.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	93.28	54.83	64.46	82.05	74.46	70.55	60.46	84.11	87.13	68.79	114.06	41.98
Merged-chr4-88706064-3	chr4	88705978	88706178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14810.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	25.84	19.12	44.5	53.09	45.0	26.03	32.22	63.2	36.39	32.13	57.79	31.95
Merged-chr16-55756917-1	chr16	55756817	55757017	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65221.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.86	7.29	2.28	5.63	2.86	11.6	5.31	3.5	18.69	19.08	22.61	10.02
Merged-chr11-70468087-3	chr11	70467989	70468189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8105.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	99.74	99.86	93.55	63.55	96.55	167.76	88.69	71.61	112.31	143.6	88.44	58.27
Merged-chr8-90828806-3	chr8	90828702	90828902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-33.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	60.17	51.06	65.03	63.55	66.68	77.14	37.54	75.84	72.77	58.24	80.9	52.0
Merged-chr3-131698335-3	chr3	131698238	131698438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132306.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	129.21	97.59	119.8	93.71	166.51	157.41	124.9	148.54	186.26	193.81	190.44	107.14
Merged-chr10-75764361-3	chr10	75764267	75764467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-10.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	184.53	135.83	202.51	216.79	184.91	182.81	131.54	217.63	256.28	209.38	293.45	157.57
Merged-chr19-32595769-3	chr19	32595690	32595890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	75.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	28.27	32.2	42.21	33.78	22.91	23.52	26.57	33.34	24.78	31.13	17.59	19.74
Merged-chr9-101076667-3	chr9	101076569	101076769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1907.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	18.57	24.9	28.52	10.86	33.96	60.21	41.85	22.74	60.97	61.26	64.32	22.87
Merged-chr3-61441562-3	chr3	61441468	61441668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77061.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	56.94	44.27	50.2	76.02	82.23	52.68	63.11	68.64	68.05	61.26	78.89	44.48
Merged-chrX-140510403-3	chrX	140510317	140510517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	32251.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	27.05	20.12	25.1	39.42	42.96	26.03	22.59	32.72	27.34	20.59	31.15	24.75
Merged-chr11-3133693-2	chr11	3133701	3133901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 29 of 32)	intron (NM_030207, intron 29 of 32)	9780.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	34.73	17.1	26.24	25.74	41.73	30.42	44.18	20.86	0.0	0.0	0.0	0.0
Merged-chr18-67392351-3	chr18	67392253	67392453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026473, intron 2 of 3)	intron (NM_026473, intron 2 of 3)	1622.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	88.43	65.15	71.31	92.1	104.73	87.8	67.76	118.07	63.92	86.86	83.41	59.83
Merged-chr7-44997293-3	chr7	44997208	44997408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	271.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	32.71	23.14	38.79	13.27	42.96	34.81	32.22	25.77	53.3	62.76	55.27	34.46
Merged-chrUn_JH584304-48025-1	chrUn_JH584304	47925	48125	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11664.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.49	25.61	18.59	25.37
Merged-chr4-45108089-3	chr4	45107988	45108188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	25.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	26.65	26.16	32.52	29.76	33.96	40.45	33.55	33.14	41.3	45.69	51.25	24.43
Merged-chr4-86670034-3	chr4	86669937	86670137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	22.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	62.99	82.5	79.29	65.96	65.46	138.29	90.02	108.7	94.21	108.96	107.03	67.35
Merged-chr5-24034265-3	chr5	24034181	24034381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3591.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	29.07	15.59	27.38	22.93	26.59	27.59	44.51	64.43	31.47	52.72	31.15	32.27
Merged-chr3-97934050-3	chr3	97933938	97934138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3865.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	38.36	44.02	31.38	23.73	48.27	100.66	38.53	47.69	71.0	89.37	103.01	57.64
Merged-chr13-54578327-3	chr13	54578227	54578427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019968, intron 2 of 3)	intron (NM_019968, intron 2 of 3)	3314.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	36.75	20.88	26.81	39.82	34.36	27.91	20.59	37.09	36.58	34.65	45.22	29.13
Merged-chr7-66310826-3	chr7	66310728	66310928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	MTC|LTR|ERVL-MaLR	70896.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	54.11	41.5	69.6	80.44	46.23	48.92	43.18	63.73	66.48	51.72	75.87	38.53
Merged-chr14-21814048-3	chr14	21813952	21814152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-17509.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	27.46	26.41	29.09	17.7	25.36	28.85	19.6	22.29	55.07	28.62	45.73	42.92
Merged-chr17-81551986-3	chr17	81551871	81552071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	186416.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	37.96	24.4	31.38	39.42	22.09	34.18	18.27	41.64	32.26	21.59	36.68	12.53
Merged-chr6-97482070-3	chr6	97481968	97482168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	MIRb|SINE|MIR	5752.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	34.32	17.86	34.8	27.35	51.55	56.76	21.92	59.44	36.98	42.18	69.85	37.91
Merged-chr11-32205326-3	chr11	32205185	32205385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-130.0	NM_030093	78372.0	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	92.47	91.3	102.68	102.16	164.05	142.05	108.95	177.06	157.74	180.26	271.34	93.04
Merged-chr10-123061021-3	chr10	123060916	123061116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163024, intron 1 of 34)	RMER19B|LTR|ERVK	15489.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	64.61	52.07	94.13	118.25	101.05	68.05	119.91	145.57	41.5	35.65	73.36	37.59
Merged-chr4-132983174-3	chr4	132983055	132983255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	9060.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	61.38	64.64	49.06	45.85	96.96	133.58	51.82	61.99	120.57	132.05	86.43	52.94
Merged-chr5-121618978-3	chr5	121618880	121619080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178799)	promoter-TSS (NM_178799)	-42.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	45.23	61.37	54.19	93.31	49.91	59.58	43.85	65.05	110.54	73.31	92.96	59.21
Merged-chr17-35262991-3	chr17	35262890	35263090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010380)	promoter-TSS (NM_010380)	-104.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	503.53	525.19	442.67	404.61	522.83	805.57	394.95	377.81	221.86	231.97	217.07	130.95
Merged-chr13-37620686-2	chr13	37620574	37620774	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205364.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	12.92	9.06	21.11	17.7	15.96	16.31	42.85	32.44	12.59	21.09	29.65	19.42
Merged-chr3-50406954-3	chr3	50406858	50407058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	36655.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	42.8	38.48	74.73	83.26	60.14	45.15	70.09	77.47	26.95	23.1	52.26	24.75
Merged-chr16-55789103-3	chr16	55788997	55789197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33041.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	45.63	47.54	45.07	45.85	40.09	63.66	47.5	52.51	60.19	43.18	41.2	36.34
Merged-chr1-33669793-3	chr1	33669684	33669884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	10.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	38.36	24.15	36.51	35.8	44.59	33.24	25.24	44.02	57.43	39.16	72.86	44.17
Merged-chr8-117050988-3	chr8	117050938	117051138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029686, exon 16 of 43)	exon (NM_029686, exon 16 of 43)	31411.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	42.8	26.66	27.38	29.76	38.05	40.14	26.24	38.94	47.4	38.66	46.73	20.68
Merged-chr17-69143215-3	chr17	69143136	69143336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-13508.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	62.59	33.96	61.04	51.88	49.5	36.37	79.39	94.54	67.86	44.19	82.41	63.59
Merged-chr5-130001539-3	chr5	130001468	130001668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	1481.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	18.57	14.59	31.95	32.98	27.41	24.15	26.57	35.36	26.95	25.11	35.68	18.17
Merged-chr1-191122935-3	chr1	191122839	191123039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24525.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	70.26	45.53	57.62	71.99	76.5	65.85	59.13	70.21	64.91	72.3	101.0	55.45
Merged-chr19-60790080-2	chr19	60789981	60790181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010123, intron 1 of 21)	CpG	612.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	13.73	21.88	19.4	32.58	13.91	11.6	12.62	13.99	15.14	29.62	16.08	17.54
Merged-chr15-97784313-3	chr15	97784208	97784408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-57.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	55.72	43.01	32.52	28.56	57.27	61.46	35.87	45.17	60.38	36.65	107.53	36.97
Merged-chr12-36029478-3	chr12	36029361	36029561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	13017.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	42.4	31.19	58.19	33.78	39.27	54.88	22.59	53.86	53.5	22.09	48.24	33.83
Merged-chr18-49979914-1	chr18	49979814	49980014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	487.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	13.33	15.09	2.85	10.46	19.23	9.41	7.97	6.42	13.77	28.12	5.02	3.76
Merged-chr10-79909303-3	chr10	79909191	79909391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359629)	promoter-TSS (NM_001359629)	-353.0	NM_001359629	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	36.75	22.13	47.92	53.89	53.18	48.92	42.52	21.95	43.27	49.21	52.26	43.23
Merged-chr19-34607878-3	chr19	34607779	34607979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-78.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	21.4	26.41	31.38	37.81	38.05	31.67	27.24	21.9	59.2	65.27	39.19	20.99
Merged-chr9-89257224-3	chr9	89257111	89257311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45827.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	44.82	31.69	70.74	52.29	62.59	91.88	128.88	93.11	50.16	54.73	66.83	21.62
Merged-chr14-31374550-3	chr14	31374470	31374670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	37932.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	28.67	14.34	57.05	32.18	41.32	44.84	30.23	49.09	36.58	22.09	58.29	38.85
Merged-chr17-5491567-3	chr17	5491489	5491689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	85.2	85.02	148.32	135.94	93.68	97.52	88.03	137.75	100.31	80.34	153.26	78.94
Merged-chr19-10525438-6	chr19	10525358	10525558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025333)	promoter-TSS (NM_025333)	214.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	32.3	28.93	45.07	23.33	35.59	46.72	37.2	31.21	49.96	73.81	48.74	45.42
Merged-chr8-74993859-5	chr8	74993759	74993959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178017, intron 1 of 10)	CpG	209.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	22.61	21.88	21.11	28.96	24.55	25.09	26.57	13.46	23.21	23.6	34.17	21.93
Merged-chr1-161998948-3	chr1	161998860	161999060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-6009.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	20.19	23.39	33.66	17.29	45.0	33.87	34.88	42.2	50.35	35.65	39.7	31.95
Merged-chr9-44603659-3	chr9	44603552	44603752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89|LTR|ERV1	-1240.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	26.65	21.88	34.23	26.14	20.86	50.49	19.6	34.71	48.58	64.27	48.24	38.53
Merged-chrX-7375961-3	chrX	7375864	7376064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019461)	promoter-TSS (NM_019461)	39.0	NR_026741	100270707.0	Mm.117112	NR_026741	ENSMUSG00000087252	Gm14379	-	predicted gene 14379	ncRNA	29.88	26.16	25.1	34.99	28.64	32.93	35.21	24.22	22.42	15.06	29.65	15.04
Merged-chr3-9020430-3	chr3	9020312	9020512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89-int|LTR|ERV1	-15689.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	151.02	185.38	172.85	207.13	203.73	256.82	185.02	192.73	171.91	212.39	267.32	142.22
Merged-chr12-111713190-3	chr12	111713092	111713292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027404)	promoter-TSS (NM_027404)	64.0	NM_027404	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	65.41	70.93	39.93	54.3	67.5	99.09	52.82	60.06	96.57	94.9	97.48	56.7
Merged-chr12-84846844-3	chr12	84846713	84846913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28989.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	36.75	30.43	37.65	17.7	26.59	50.8	41.85	31.51	31.27	28.12	30.65	13.78
Merged-chr7-38183879-3	chr7	38183778	38183978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028166)	promoter-TSS (NM_028166)	91.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	24.63	35.97	23.39	35.8	31.09	31.36	44.84	25.96	28.52	22.59	33.16	20.68
Merged-chr13-21783392-3	chr13	21783297	21783497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	0.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	72.28	69.17	63.32	70.79	71.18	73.06	43.18	48.2	99.52	99.42	112.56	61.09
Merged-chr2-167680141-3	chr2	167680026	167680226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8789.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	23.82	32.2	43.93	17.7	31.09	40.14	12.29	32.07	49.96	55.23	45.73	33.83
Merged-chr5-43867443-3	chr5	43867338	43867538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	-1371.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	25.84	24.9	32.52	22.52	19.64	44.21	41.19	13.26	46.22	44.69	83.41	20.99
Merged-chr5-113772733-3	chr5	113772644	113772844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016926)	promoter-TSS (NM_016926)	-68.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	86.41	62.38	62.18	66.36	75.28	97.21	46.5	57.25	129.22	123.52	138.18	62.03
Merged-chr14-55098183-3	chr14	55098086	55098286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001303502)	TTS (NM_001303502)	3402.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	28.27	27.42	35.94	31.77	23.32	38.88	28.23	33.14	46.62	31.63	53.26	17.54
Merged-chr11-35769418-3	chr11	35769328	35769528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-67.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	282.25	277.44	318.89	261.43	319.92	335.52	261.42	328.07	355.61	396.16	502.48	221.17
Merged-chr5-100872183-3	chr5	100872078	100872278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	25949.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	28.27	16.35	50.2	36.2	19.64	29.48	22.92	49.68	64.71	56.74	81.9	41.35
Merged-chr18-39416932-3	chr18	39416823	39417023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70322.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	32.71	29.93	20.54	29.36	36.82	38.57	22.92	39.79	25.37	25.61	46.23	21.3
Merged-chr19-4257743-3	chr19	4257650	4257850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6128.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	62.99	59.11	73.59	61.54	56.46	64.28	32.55	42.76	73.36	52.22	72.86	43.54
Merged-chr8-19784666-3	chr8	19784594	19784794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	CpG	55118.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	189.78	187.89	248.72	235.69	338.74	334.9	179.7	172.23	218.52	243.02	263.3	160.08
Merged-chr15-59374147-3	chr15	59374052	59374252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026746)	promoter-TSS (NM_026746)	0.0	NM_153548	223593.0	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	58.15	52.82	37.08	60.73	37.64	49.86	40.86	29.27	47.6	52.72	45.73	45.42
Merged-chr6-17694541-5	chr6	17694420	17694620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	CpG	526.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	32.71	52.07	45.64	37.4	54.82	50.17	57.47	35.5	40.71	62.76	56.78	41.35
Merged-chr12-64875978-1	chr12	64875878	64876078	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41933.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	1.21	0.25	6.85	4.02	2.05	4.08	10.96	17.44	1.97	6.03	3.01	3.45
Merged-chrUn_JH584304-81587-1	chrUn_JH584304	81487	81687	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21898.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	64.12	48.7	47.23	80.51
Merged-chr14-76857609-3	chr14	76857519	76857719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97488.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	33.11	26.16	30.23	43.84	36.0	18.19	33.88	46.12	22.62	22.59	33.16	16.92
Merged-chr9-40322482-3	chr9	40322367	40322567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-1144.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	47.24	22.89	42.21	41.43	56.46	62.71	82.71	75.08	81.23	75.82	105.02	33.21
Merged-chr4-149780754-3	chr4	149780652	149780852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-6485.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	96.1	104.13	120.37	121.87	129.28	142.99	77.06	98.72	136.89	138.08	130.65	87.09
Merged-chr18-83981368-3	chr18	83981261	83981461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105201.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	58.95	41.25	71.31	79.23	50.73	56.76	71.42	86.33	110.54	73.81	175.37	58.89
Merged-chr9-65718368-3	chr9	65718274	65718474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 3 of 9)	intron (NM_172536, intron 3 of 9)	41826.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	32.71	17.1	39.93	26.95	36.41	31.67	23.25	33.81	18.29	37.16	41.71	17.54
Merged-chr17-50528696-3	chr17	50528596	50528796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	MTEa|LTR|ERVL-MaLR	19149.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	23.02	16.35	25.1	27.75	32.32	45.78	13.95	33.81	45.63	41.17	39.7	23.18
Merged-chr3-8993608-3	chr3	8993556	8993756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	10548.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	10.09	6.79	23.96	22.12	43.36	35.75	19.27	29.07	21.83	36.65	33.67	31.95
Merged-chr2-160225661-3	chr2	160225565	160225765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101829.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	61.38	32.45	54.19	52.29	64.64	81.53	75.73	109.21	79.46	91.89	80.4	43.54
Merged-chr18-64887712-4	chr18	64887608	64887808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-48.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	23.02	26.41	26.81	21.72	33.96	31.36	24.91	43.04	33.44	23.1	45.22	12.84
Merged-chr13-110903424-3	chr13	110903326	110903526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-73.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	36.75	49.55	70.17	79.64	52.77	48.92	63.78	90.51	88.31	62.26	108.03	70.17
Merged-chr11-3165655-2	chr11	3165581	3165781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	intron (NM_030207, intron 7 of 32)	27782.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	28.67	30.43	47.35	24.53	34.77	26.03	33.88	28.18	0.2	1.51	0.5	0.63
Merged-chr4-59823728-3	chr4	59823615	59823815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	18065.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	37.96	32.95	55.33	46.66	44.18	41.71	41.52	78.79	23.01	28.12	43.21	21.62
Merged-chr12-69500759-3	chr12	69500675	69500875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25225.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	24.23	20.88	36.51	24.94	33.14	22.89	21.92	28.63	24.78	28.12	32.66	24.75
Merged-chr13-45974846-3	chr13	45974762	45974962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9871.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	27.86	14.34	15.97	19.71	40.5	31.36	36.54	30.64	32.65	43.68	33.67	19.42
Merged-chr14-101640507-5	chr14	101640404	101640604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033132)	promoter-TSS (NM_001033132)	-33.0	NM_001168592	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	30.69	27.17	30.8	23.73	42.55	47.04	56.47	36.76	48.98	67.28	81.9	57.64
Merged-chr16-94498224-3	chr16	94498140	94498340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007834, exon 8 of 8)	3' UTR (NM_007834, exon 8 of 8)	28389.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	39.98	21.63	47.35	35.8	63.41	65.22	37.2	99.65	35.4	23.6	48.24	33.83
Merged-chr8-84840698-3	chr8	84840570	84840770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001297607)	promoter-TSS (NM_001297607)	-5.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	68.65	66.91	66.17	61.94	76.5	93.44	46.84	78.79	105.23	114.48	120.6	63.91
Merged-chr14-45388863-3	chr14	45388746	45388946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-50.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	47.24	27.42	30.8	42.23	44.59	44.84	45.51	67.43	40.12	36.15	59.8	34.46
Merged-chr2-148530683-3	chr2	148530593	148530793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87158.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	38.76	18.11	50.77	68.37	94.09	57.38	138.85	149.27	57.63	68.29	138.69	44.17
Merged-chr5-45855711-3	chr5	45855602	45855802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	850.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	23.42	15.34	26.81	24.13	16.36	25.09	17.27	22.23	35.8	16.07	43.72	19.11
Merged-chr12-4915697-3	chr12	4915600	4915800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1653.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	61.78	30.43	34.8	37.4	27.0	33.24	25.58	46.43	39.93	44.19	33.16	31.33
Merged-chr5-134229627-3	chr5	134229524	134229724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	1.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	47.65	58.1	102.68	49.07	71.18	83.41	41.19	48.79	83.2	75.82	85.92	42.92
Merged-chr11-4222516-3	chr11	4222416	4222616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028022)	TTS (NM_028022)	4265.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	39.57	44.77	31.95	20.51	51.55	48.6	34.55	44.75	39.14	27.11	36.68	19.74
Merged-chr10-66818117-3	chr10	66818021	66818221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102263.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	17.77	18.61	35.37	39.01	51.55	49.86	82.05	82.79	38.16	48.2	53.77	36.97
Merged-chr13-34715574-3	chr13	34715465	34715665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-24077.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	79.14	69.42	119.8	103.37	114.96	134.52	116.92	124.99	76.71	71.3	122.61	61.71
Merged-chr2-148492389-3	chr2	148492268	148492468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48833.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	37.55	30.43	42.21	45.45	105.55	74.94	89.02	128.38	79.86	44.19	97.48	52.0
Merged-chr7-66389353-3	chr7	66389237	66389437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	-996.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	75.51	67.91	70.74	36.6	79.78	88.74	44.84	50.38	122.14	89.37	98.49	53.26
Merged-chr15-11996069-3	chr15	11995972	11996172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011294)	promoter-TSS (NM_011294)	-65.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	117.1	94.83	113.52	83.26	101.87	130.76	83.37	117.98	151.06	142.1	186.92	88.03
Merged-chr10-19053771-3	chr10	19053671	19053871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-38361.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	40.78	24.65	35.37	36.6	44.59	62.4	39.2	46.09	70.81	57.24	84.42	40.72
Merged-chr8-4253149-3	chr8	4253013	4253213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	11.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	80.36	91.05	79.86	88.48	82.64	101.28	102.64	83.27	85.56	89.88	104.01	72.99
Merged-chr9-96759291-3	chr9	96759184	96759384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6278.0	NR_102295	319707.0	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	29.48	14.84	26.81	17.29	31.09	18.5	9.63	28.29	25.37	28.12	30.65	21.93
Merged-chr13-37633160-3	chr13	37633041	37633241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-192897.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	31.09	14.09	43.35	22.93	30.68	38.57	27.57	30.81	39.34	20.08	30.15	20.05
Merged-chr18-65679513-3	chr18	65679414	65679614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-18754.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	32.3	27.67	50.77	57.92	32.32	54.56	43.85	64.71	39.53	26.11	57.28	43.23
Merged-chr13-97546329-3	chr13	97546232	97546432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13668.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	48.86	47.29	60.47	49.47	58.5	59.89	52.82	79.04	57.63	74.31	83.91	52.0
Merged-chr3-27192024-3	chr3	27191919	27192119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9015.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	43.21	36.97	70.17	43.84	39.27	51.11	41.19	66.98	69.43	49.21	68.34	45.74
Merged-chr12-75735661-4	chr12	75735560	75735760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030750)	promoter-TSS (NM_030750)	69.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	17.36	21.88	16.54	22.93	27.0	21.95	20.93	21.17	38.35	33.14	37.69	19.11
Merged-chr6-114295728-3	chr6	114295624	114295824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13089.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	25.84	26.16	19.97	28.56	23.73	49.54	24.58	24.62	40.71	45.69	61.3	24.75
Merged-chr13-65240983-3	chr13	65240846	65241046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35230.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	51.69	48.29	70.74	67.97	58.5	84.98	60.46	55.91	89.69	100.92	98.49	55.76
Merged-chrX-135008857-3	chrX	135008766	135008966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175446, intron 1 of 6)	CpG	343.0	NM_175446	215693.0	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	14.54	27.92	29.09	26.55	27.82	31.36	21.92	28.32	33.04	33.14	50.75	31.01
Merged-chr4-115000015-3	chr4	114999918	115000118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-100.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	211.59	179.84	218.48	205.12	192.28	242.39	138.18	216.56	306.24	330.39	428.12	176.06
Merged-chr7-100944473-3	chr7	100944368	100944568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-12307.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	36.75	37.73	44.5	63.55	42.96	46.41	32.22	52.37	35.4	34.14	48.24	33.83
Merged-chr17-29437420-3	chr17	29437306	29437506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-53639.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	181.71	173.55	221.91	128.3	149.73	150.83	127.22	97.04	222.45	197.83	322.59	122.8
Merged-chr19-8837505-3	chr19	8837389	8837589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136064)	promoter-TSS (NM_001136064)	22.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	34.32	32.2	22.25	34.59	31.5	38.88	24.58	25.68	34.03	24.1	40.7	22.56
Merged-chr11-86995839-3	chr11	86995696	86995896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2034.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	58.95	68.67	47.35	36.6	55.64	67.1	21.59	48.67	51.93	52.72	42.21	33.52
Merged-chr17-24007119-3	chr17	24007029	24007229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9029.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	54.92	34.96	51.91	60.73	62.18	37.63	59.46	51.87	77.69	64.77	68.84	36.65
Merged-chr4-33289592-3	chr4	33289485	33289685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20726.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	16.96	26.91	18.83	28.56	29.86	24.77	27.57	31.4	34.22	28.62	33.67	18.8
Merged-chr6-43849400-3	chr6	43849293	43849493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-183115.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	37.96	35.21	25.67	26.55	65.05	99.72	68.76	36.9	49.37	65.78	47.23	22.24
Merged-chr5-8997216-3	chr5	8997127	8997327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-81.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	49.67	64.39	73.59	116.64	96.14	83.1	87.03	135.17	98.93	107.95	171.35	54.82
Merged-chr3-95263403-3	chr3	95263315	95263515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173347, intron 4 of 7)	intron (NM_173347, intron 4 of 7)	-12222.0	NM_134253	171388.0	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	29.48	30.43	38.22	30.16	27.0	37.0	30.89	42.11	35.6	31.13	48.74	32.58
Merged-chr9-13314149-2	chr9	13314058	13314258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	67202.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	25.84	23.9	29.66	22.93	46.23	22.26	30.23	45.56	8.65	10.04	6.53	1.88
Merged-chr12-102443779-3	chr12	102443645	102443845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3932.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	14.13	14.09	29.66	27.75	23.32	23.83	24.25	37.88	30.88	42.18	50.75	37.28
Merged-chr13-101761853-3	chr13	101761754	101761954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	6363.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	52.49	41.0	27.95	46.25	32.73	36.06	33.22	34.88	37.96	34.14	45.73	18.8
Merged-chr11-51915726-3	chr11	51915616	51915816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51915.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	56.53	39.49	62.18	40.62	75.68	95.33	57.47	76.07	83.0	77.83	94.97	35.71
Merged-chr10-41518696-3	chr10	41518621	41518821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-779.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	30.28	45.28	26.24	41.43	29.86	28.22	32.22	29.97	27.14	40.17	34.67	27.88
Merged-chr19-42099616-3	chr19	42099528	42099728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	L2|LINE|L2	9193.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	55.32	58.1	78.15	57.92	70.77	84.35	39.86	57.87	32.65	32.13	53.77	22.24
Merged-chr14-37165407-3	chr14	37165312	37165512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30090.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	33.92	39.74	44.5	19.31	43.36	57.38	21.59	40.43	61.37	74.81	51.76	38.85
Merged-chr1-23983294-3	chr1	23983188	23983388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	22352.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	33.92	44.77	57.05	59.93	41.32	67.1	37.87	59.94	76.31	52.72	73.86	34.15
Merged-chr2-170319362-3	chr2	170319255	170319455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37006.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	93.68	51.06	68.45	98.54	69.14	74.32	40.52	73.26	100.31	77.32	123.11	67.98
Merged-chr12-106034482-3	chr12	106034366	106034566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	24203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	33.52	30.69	36.51	31.37	40.09	38.57	12.29	25.79	38.35	29.62	25.63	18.48
Merged-chr8-117256519-3	chr8	117256424	117256624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163262)	promoter-TSS (NM_001163262)	-495.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	166.36	164.5	209.36	156.86	188.19	254.31	177.38	184.74	194.52	256.58	265.81	153.81
Merged-chr15-59314983-3	chr15	59314895	59315095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009270)	promoter-TSS (NM_009270)	-97.0	NM_009270	20775.0	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	109.83	102.12	77.58	146.0	160.78	211.03	149.81	179.24	181.35	173.73	223.6	119.35
Merged-chr19-10841818-3	chr19	10841714	10841914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-730.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	144.96	103.88	172.85	173.75	172.23	207.27	138.18	170.05	207.7	166.7	239.18	134.39
Merged-chr7-43667126-3	chr7	43667032	43667232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4899.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	27.05	27.67	22.82	28.15	32.32	39.51	42.85	32.41	53.7	34.65	52.26	41.35
Merged-chr6-123244400-3	chr6	123244289	123244489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190321, intron 3 of 4)	intron (NM_001190321, intron 3 of 4)	14546.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	32.3	21.63	34.8	25.34	58.5	58.01	40.52	38.47	50.94	69.79	53.77	35.4
Merged-chr2-60855245-3	chr2	60855172	60855372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	26166.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	92.47	77.47	82.72	71.59	93.28	108.18	81.38	91.51	110.15	110.97	164.31	67.35
Merged-chr3-35932874-3	chr3	35932842	35933042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	24.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	18.57	17.61	26.81	18.1	32.73	20.7	26.57	26.05	22.42	33.14	48.24	11.9
Merged-chr13-56183722-3	chr13	56183696	56183896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4911.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	14.94	13.83	27.38	28.96	24.14	11.29	27.24	32.89	14.16	16.57	21.1	18.8
Merged-chr2-167349362-3	chr2	167349287	167349487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019835)	promoter-TSS (NM_019835)	-209.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	98.93	89.04	110.1	96.53	129.69	171.21	105.3	116.66	183.9	199.84	228.13	112.46
Merged-chr12-80046799-3	chr12	80046698	80046898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	66215.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	79.55	72.94	122.08	117.04	117.82	147.07	137.52	125.05	120.57	132.05	130.65	86.46
Merged-chr12-65172749-3	chr12	65172650	65172850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-170.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	144.56	131.3	134.06	169.73	151.37	184.07	157.12	162.67	174.66	175.74	245.21	106.2
Merged-chr5-96980245-3	chr5	96980147	96980347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17442.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	81.97	80.99	85.57	118.65	78.14	90.31	67.76	110.69	88.9	99.42	79.89	37.59
Merged-chr3-127355411-3	chr3	127355316	127355516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	53642.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	40.38	35.47	41.64	70.38	35.18	35.12	35.21	59.97	179.58	167.2	270.84	116.85
Merged-chr15-6565362-3	chr15	6565269	6565469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14478.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	44.01	61.62	49.63	49.47	77.32	98.15	63.11	74.78	70.22	72.81	82.91	39.47
Merged-chr13-52100198-3	chr13	52100088	52100288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3447.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	51.69	55.84	63.32	61.54	78.55	86.23	78.72	84.65	86.54	84.35	105.02	62.65
Merged-chr2-73486460-3	chr2	73486359	73486559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289723)	promoter-TSS (NM_001289723)	-706.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	43.61	25.91	25.67	22.93	29.86	42.65	11.63	31.4	31.08	29.62	35.68	28.51
Merged-chr2-91054046-3	chr2	91053987	91054187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008948)	promoter-TSS (NM_008948)	71.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	54.11	36.97	57.62	44.64	64.23	69.3	53.48	45.53	55.07	47.7	64.82	36.34
Merged-chr14-56903162-3	chr14	56903059	56903259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029498, exon 3 of 25)	exon (NM_029498, exon 3 of 25)	16316.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	19.38	23.14	23.39	32.58	28.64	31.98	27.57	35.44	35.01	22.59	32.16	29.13
Merged-chr9-44305767-3	chr9	44305642	44305842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-71.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	170.4	189.15	185.4	143.59	177.96	240.82	151.47	178.91	217.54	264.61	277.37	175.74
Merged-chr9-122865960-3	chr9	122865863	122866063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173364)	promoter-TSS (NM_173364)	43.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	41.59	35.97	37.65	36.2	46.64	46.41	42.52	38.89	64.32	61.26	68.34	41.35
Merged-chr15-66092330-3	chr15	66092237	66092437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-115533.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	53.7	51.81	67.88	70.38	81.82	51.11	59.79	95.38	79.27	44.69	62.81	31.01
Merged-chr11-70433789-3	chr11	70433688	70433888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	1208.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	84.39	84.01	86.14	74.41	119.05	169.64	92.01	98.13	124.5	123.52	94.47	79.88
Merged-chr9-85389186-3	chr9	85389099	85389299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62049.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	71.88	65.9	80.43	43.04	47.05	77.45	38.53	40.15	82.61	66.28	88.94	29.13
Merged-chr13-100730981-3	chr13	100730884	100731084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	-42.0	NM_009874	12572.0	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	73.49	60.37	86.14	98.54	89.59	86.86	44.84	99.76	144.17	119.0	123.11	81.14
Merged-chr2-45112200-3	chr2	45112107	45112307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-53.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	68.24	57.35	46.78	43.84	59.73	72.44	28.9	44.44	67.27	66.78	59.29	36.34
Merged-chr15-58755281-3	chr15	58755186	58755386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68141.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	18.98	17.36	55.9	26.55	36.0	27.59	34.21	45.08	47.6	30.13	41.71	25.69
Merged-chr2-93590071-3	chr2	93589983	93590183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52351.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	56.94	64.89	99.26	100.15	77.32	60.52	86.36	115.4	80.05	75.32	88.44	45.11
Merged-chr19-55643622-3	chr19	55643500	55643700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045318, exon 3 of 4)	non-coding (NR_045318, exon 3 of 4)	58604.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	166.36	168.78	177.41	205.52	198.42	186.89	155.46	159.76	215.77	228.96	230.14	140.66
Merged-chr11-100401050-3	chr11	100400969	100401169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	2953.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	85.6	68.16	80.43	74.0	74.87	121.98	36.54	57.2	115.85	125.02	111.05	57.95
Merged-chr3-145118607-3	chr3	145118524	145118724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	24.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	109.43	142.11	140.33	157.66	144.0	154.28	187.34	151.96	150.27	168.21	208.53	96.17
Merged-chr9-87255504-3	chr9	87255412	87255612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	20.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	54.92	72.94	58.76	71.59	71.59	71.18	60.79	88.04	82.81	99.42	92.96	69.55
Merged-chr2-113433980-3	chr2	113433882	113434082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010230, intron 3 of 19)	ORR1C1|LTR|ERVL-MaLR	-7082.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	23.42	21.38	40.5	37.4	32.73	32.61	24.58	54.79	32.45	27.62	40.2	25.69
Merged-chr5-33938618-3	chr5	33938474	33938674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2316.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	34.32	13.58	21.11	24.13	44.59	32.93	23.92	29.16	21.24	17.57	23.62	18.48
Merged-chr5-64376029-3	chr5	64375908	64376108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR79|LTR|ERVL	91934.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	23.82	27.17	23.39	14.08	28.23	31.04	17.94	18.9	39.53	42.68	41.71	21.3
Merged-chr4-55814984-3	chr4	55814876	55815076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-282501.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	48.05	46.78	59.9	54.7	33.14	31.98	13.62	43.77	39.73	31.63	38.19	31.33
Merged-chr2-167701658-3	chr2	167701552	167701752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10475.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	27.86	21.88	23.39	14.48	31.91	28.85	20.93	28.04	24.59	20.59	31.15	26.63
Merged-chr9-46110811-3	chr9	46110697	46110897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	97977.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	43.21	46.53	33.09	17.29	20.46	58.64	18.27	13.49	44.45	50.21	39.19	12.84
Merged-chr7-101382445-3	chr7	101382358	101382558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-3068.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	159.1	122.24	162.01	140.37	176.73	218.25	133.86	135.9	220.09	272.14	254.26	138.15
Merged-chr2-166420490-3	chr2	166420386	166420586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26965.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	58.15	44.27	61.04	81.24	68.32	78.71	57.13	75.31	74.15	58.75	104.01	54.51
Merged-chr11-69919852-3	chr11	69919753	69919953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166593, intron 1 of 6)	intron (NM_001166593, intron 1 of 6)	777.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	42.4	48.29	38.22	32.58	49.5	73.69	37.54	27.62	70.61	72.3	62.31	39.16
Merged-chr10-93564816-2	chr10	93564719	93564919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359749, intron 4 of 13)	intron (NM_001359749, intron 4 of 13)	9938.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	16.15	7.04	14.26	18.1	19.23	23.83	14.28	24.79	7.87	2.01	10.05	4.7
Merged-chr4-43287551-3	chr4	43287441	43287641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177195, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	20382.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	25.44	16.35	34.8	28.15	30.68	31.04	15.61	30.5	20.26	16.07	25.12	20.36
Merged-chr14-118700174-3	chr14	118700056	118700256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	MTC|LTR|ERVL-MaLR	6063.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	24.23	39.99	76.44	42.63	22.91	21.95	15.94	21.84	49.76	36.15	61.3	30.07
Merged-chr3-127896310-3	chr3	127896181	127896381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027482)	promoter-TSS (NM_027482)	42.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	56.13	77.72	75.87	70.38	73.23	76.83	103.64	114.11	78.68	86.36	94.97	54.82
Merged-chr18-54902405-1	chr18	54902305	54902505	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87775.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	17.77	11.57	17.68	11.66	13.91	14.74	12.95	16.09	32.45	19.58	29.14	16.6
Merged-chr13-102688351-3	chr13	102688259	102688459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-5188.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	76.72	67.16	106.1	92.91	63.41	79.02	85.04	110.33	97.56	96.4	119.59	47.3
Merged-chr7-133636917-3	chr7	133636804	133637004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-771.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	27.05	19.12	15.4	19.71	19.64	17.87	12.29	19.04	27.34	27.62	49.24	27.57
Merged-chr5-142935787-3	chr5	142935681	142935881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33B|LTR|ERVL	-24574.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	34.73	22.89	22.82	36.6	20.46	39.2	15.28	27.28	57.63	43.18	71.35	26.0
Merged-chr7-43607151-3	chr7	43607051	43607251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028913)	promoter-TSS (NM_028913)	-18.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	43.21	36.47	19.97	16.89	38.05	56.13	17.94	26.5	55.86	42.18	62.81	15.66
Merged-chr7-28169926-6	chr7	28169842	28170042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007991, intron 1 of 8)	CpG	194.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	28.67	27.17	23.39	22.12	22.09	25.09	30.23	29.64	31.47	37.66	39.19	38.85
Merged-chr17-25115578-1	chr17	25115478	25115678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001163661, exon 1 of 21)	5' UTR (NM_001163661, exon 1 of 21)	327.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	31.09	24.4	25.1	15.69	26.59	24.46	19.27	19.57	8.65	11.55	12.06	5.33
Merged-chr19-5818123-3	chr19	5818032	5818232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15460.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	86.41	86.27	82.15	61.94	111.28	129.82	56.47	88.46	112.31	102.93	105.02	60.46
Merged-chr1-64690804-3	chr1	64690746	64690946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038009)	promoter-TSS (NR_038009)	-187.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	192.61	225.62	256.14	185.01	228.69	255.56	153.13	242.66	273.2	275.66	321.09	146.92
Merged-chr14-31583290-3	chr14	31583180	31583380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5897.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	23.02	19.87	39.93	19.71	39.27	31.36	28.9	41.86	43.07	27.11	53.26	18.17
Merged-chr8-75067506-3	chr8	75067447	75067647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011622, exon 13 of 15)	exon (NM_011622, exon 13 of 15)	-26071.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	43.21	48.04	42.21	43.44	43.77	55.5	68.1	47.69	58.81	51.21	67.84	42.29
Merged-chr9-85400655-3	chr9	85400552	85400752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73502.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	34.32	32.45	31.95	59.93	32.73	25.71	26.57	45.81	43.86	45.69	42.71	17.23
Merged-chr19-15925059-3	chr19	15924948	15925148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	11.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	48.86	35.72	45.64	45.05	45.41	48.92	39.2	60.73	39.14	18.58	44.72	18.17
Merged-chr11-60537635-3	chr11	60537536	60537736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-47.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	105.79	90.55	79.86	46.66	89.18	109.44	30.89	50.89	88.31	119.0	78.39	40.41
Merged-chr5-53589252-4	chr5	53589118	53589318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	CpG	-1128.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	37.15	51.81	43.93	39.82	83.05	77.77	68.1	52.23	60.19	56.74	79.39	43.54
Merged-chr3-86110249-2	chr3	86110147	86110347	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082414, intron 7 of 14)	intron (NM_001082414, intron 7 of 14)	25813.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	6.86	2.26	3.42	3.22	44.18	40.45	21.26	42.95	55.47	61.26	64.32	23.81
Merged-chr7-38019066-3	chr7	38018957	38019157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	CpG	495.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	34.32	34.46	32.52	27.75	31.91	33.24	36.87	29.8	37.57	35.15	48.24	40.41
Merged-chr18-66458141-2	chr18	66458051	66458251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-453.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	41.59	38.23	51.91	62.34	48.68	60.21	61.45	60.67	75.13	76.32	92.96	65.47
Merged-chr15-78532285-3	chr15	78532169	78532369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2618.0	NM_028331	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	36.75	24.4	23.39	16.09	36.0	32.61	24.25	22.26	35.6	28.62	39.7	15.04
Merged-chr12-21265790-1	chr12	21265690	21265890	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 25 of 26)	intron (NM_001004364, intron 25 of 26)	20494.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	2.42	5.28	3.99	5.23	1.23	2.51	5.98	9.93	0.59	1.51	1.51	0.63
Merged-chr3-121292061-3	chr3	121291944	121292144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 1 of 2)	CpG	304.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	84.39	84.76	107.25	84.06	120.69	104.42	65.44	131.66	138.47	147.12	200.49	89.91
Merged-chr1-95528917-3	chr1	95528810	95529010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138684.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	19.38	13.08	23.39	22.12	48.68	38.26	52.82	90.95	37.96	40.17	55.27	30.39
Merged-chr7-4064074-4	chr7	4063985	4064185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113474)	promoter-TSS (NM_001113474)	-881.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	28.27	32.7	38.79	33.38	37.23	32.3	23.92	12.87	31.27	47.2	32.66	38.85
Merged-chr17-47441533-3	chr17	47441433	47441633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145489, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-4158.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	40.38	47.79	39.36	26.95	40.5	67.42	30.89	23.64	62.15	59.75	38.19	27.88
Merged-chr6-113482725-3	chr6	113482628	113482828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-628.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	19.79	29.18	15.4	18.5	25.36	32.3	29.23	40.91	35.21	30.13	45.22	26.0
Merged-chr1-138322856-3	chr1	138322761	138322961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49123.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	92.07	93.32	87.28	71.19	96.96	132.01	61.78	88.04	105.42	120.51	97.98	68.61
Merged-chr3-95675781-4	chr3	95675693	95675893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144899)	TTS (NM_144899)	12124.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	25.84	29.18	33.66	25.34	36.41	27.59	31.89	38.94	32.65	25.11	26.13	28.82
Merged-chr17-83527389-3	chr17	83527276	83527476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13043.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	12.92	14.09	19.97	14.88	25.77	21.95	20.59	19.15	19.67	22.09	36.68	21.62
Merged-chr4-116053723-5	chr4	116053631	116053831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028142, exon 1 of 6)	exon (NM_028142, exon 1 of 6)	145.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	33.92	33.2	37.08	30.16	26.59	34.81	33.55	32.97	29.11	42.18	37.69	34.77
Merged-chr16-33530764-1	chr16	33530664	33530864	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12169.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	1.62	6.29	4.56	7.64	5.32	4.08	15.94	17.44	2.16	5.52	4.52	0.94
Merged-chr16-49818763-3	chr16	49818675	49818875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	44.01	50.31	34.8	83.26	54.0	41.39	25.58	62.41	73.95	48.2	82.41	43.54
Merged-chr16-95612193-3	chr16	95612088	95612288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25595.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	18.17	21.13	31.38	29.76	49.5	58.64	44.51	62.55	46.42	48.2	63.31	24.12
Merged-chr2-118545976-3	chr2	118545873	118546073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	-1386.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	21.8	16.6	22.82	12.87	24.55	20.07	12.95	16.79	19.08	28.12	24.12	20.68
Merged-chr2-152226840-3	chr2	152226713	152226913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007788)	promoter-TSS (NM_007788)	-27.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	50.47	52.32	53.05	74.0	77.32	60.21	42.52	43.74	78.87	65.27	92.46	53.88
Merged-chr13-42527111-3	chr13	42526998	42527198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153701.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	100.14	61.88	84.43	113.02	80.59	75.88	88.69	104.66	106.6	73.31	189.94	83.33
Merged-chr2-52960922-3	chr2	52960826	52961026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103058.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	29.07	18.36	26.81	33.78	35.18	29.48	29.23	30.62	29.9	16.57	40.2	29.76
Merged-chr2-32712360-3	chr2	32712299	32712499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037217)	TTS (NR_037217)	385.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	18.98	14.09	12.55	13.67	20.05	17.56	18.6	13.68	25.18	20.59	32.16	14.1
Merged-chr9-99212855-3	chr9	99212732	99212932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	24407.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	38.36	36.22	41.64	46.25	64.64	73.38	47.17	51.81	79.07	70.8	72.36	58.27
Merged-chr2-91965646-3	chr2	91965544	91965744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2081.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	41.19	41.0	61.61	53.09	50.32	57.07	56.14	77.66	83.59	59.75	74.87	43.86
Merged-chr9-47683026-2	chr9	47682927	47683127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	135181.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	23.82	21.88	25.1	21.72	26.59	37.0	13.29	12.03	3.34	4.02	0.0	1.88
Merged-chr4-139198216-3	chr4	139198116	139198316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4105.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	60.17	26.41	62.18	53.49	54.41	54.88	47.17	86.19	69.43	58.24	75.87	38.53
Merged-chr17-26531753-3	chr17	26531628	26531828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23256.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	42.4	26.41	54.76	32.18	47.46	47.04	56.8	65.24	58.22	26.11	68.34	40.1
Merged-chr2-24919594-3	chr2	24919499	24919699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172545)	promoter-TSS (NM_172545)	10.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	55.72	54.83	65.03	35.8	98.59	82.78	33.55	52.54	82.81	88.37	103.01	47.93
Merged-chr2-126497010-3	chr2	126496912	126497112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	2835.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	61.38	39.24	54.76	64.75	56.05	60.21	42.85	67.29	52.91	63.77	67.84	44.8
Merged-chr16-4624903-3	chr16	4624757	4624957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	89.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	37.96	56.85	43.93	56.71	54.41	64.91	48.5	26.61	66.28	70.29	66.83	45.74
Merged-chr14-64327696-3	chr14	64327601	64327801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	89255.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	37.55	20.12	41.07	37.0	50.32	74.63	39.2	49.01	64.71	43.68	70.35	46.36
Merged-chr16-32163659-3	chr16	32163555	32163755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1939.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	29.07	22.13	33.66	28.96	19.23	35.43	17.61	27.08	41.5	34.14	29.65	21.3
Merged-chr7-143059640-3	chr7	143059541	143059741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5955.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	53.7	61.88	73.02	58.72	51.14	74.0	37.54	65.24	104.05	101.93	106.53	72.36
Merged-chr16-93816599-3	chr16	93816522	93816722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15499.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	161.52	171.04	180.83	167.32	121.91	169.64	161.77	188.44	210.65	193.81	275.36	150.68
Merged-chr13-24464598-3	chr13	24464507	24464707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 14 of 16)	RMER5|LTR|ERV1	49485.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	16.56	19.37	31.95	23.73	35.59	36.37	33.55	28.01	62.74	61.76	36.18	15.35
Merged-chr1-21078634-3	chr1	21078555	21078755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	570.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	11.71	14.84	6.85	4.02	14.73	25.09	12.95	9.79	16.33	17.57	12.06	6.89
Merged-chr16-19973646-3	chr16	19973538	19973738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9411.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	39.17	25.66	34.8	35.39	40.91	20.38	26.24	45.7	42.68	34.65	40.2	24.75
Merged-chr11-79259036-3	chr11	79258936	79259136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4341.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	17.36	17.61	19.97	20.51	9.82	27.28	10.3	10.82	24.19	32.64	20.6	24.75
Merged-chr1-125561421-1	chr1	125561321	125561521	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028787, intron 1 of 15)	intron (NM_028787, intron 1 of 15)	419.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	14.94	11.82	9.7	14.88	32.32	35.75	18.6	29.19	31.08	20.59	23.62	26.0
Merged-chr15-58692042-3	chr15	58691941	58692141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	131386.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	80.76	64.89	64.46	91.7	91.64	76.51	73.74	89.47	99.52	71.3	102.51	57.33
Merged-chr19-41402768-3	chr19	41402668	41402868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17698.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	89.64	64.14	84.43	81.24	101.05	102.54	70.42	77.78	88.31	78.33	99.99	41.98
Merged-chr1-132333000-3	chr1	132332889	132333089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028778, exon 7 of 7)	3' UTR (NM_028778, exon 7 of 7)	16864.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	23.42	29.18	23.96	23.73	27.82	26.03	25.58	15.59	25.37	30.13	29.14	23.49
Merged-chr12-114991110-1	chr12	114991010	114991210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-477416.0	NR_106063	102465664.0		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	23.02	23.14	34.8	41.02	1.64	0.63	0.0	1.04	0.59	0.5	1.51	2.82
Merged-chr6-4798544-3	chr6	4798424	4798624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51218.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	39.57	44.77	41.07	77.62	59.73	67.42	59.46	44.19	81.23	58.75	62.81	49.81
Merged-chr9-108507962-3	chr9	108507880	108508080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-25.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	97.31	93.57	75.3	71.59	91.23	114.77	64.77	91.09	128.24	119.5	105.02	63.91
Merged-chr1-136415362-3	chr1	136415322	136415522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	97.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	82.78	94.83	59.33	94.11	82.23	111.32	69.76	56.97	102.87	168.71	115.07	87.71
Merged-chr4-63372128-3	chr4	63372013	63372213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 18 of 21)	intron (NM_001045514, intron 18 of 21)	9664.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	20.59	12.07	22.82	22.12	19.64	35.75	18.6	32.44	21.05	17.07	28.64	22.24
Merged-chr2-160083799-3	chr2	160083684	160083884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67131.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	37.96	28.67	39.36	37.4	46.64	43.59	44.84	52.49	24.0	26.11	32.16	14.1
Merged-chr3-88513756-5	chr3	88513639	88513839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10387.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	17.36	14.59	13.69	10.86	15.55	15.68	11.96	8.92	15.74	21.09	24.62	10.34
Merged-chr11-53300587-3	chr11	53300486	53300686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-107.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	136.08	159.47	132.92	120.26	182.46	199.75	122.9	123.81	225.4	200.84	205.52	119.04
Merged-chr7-99381431-3	chr7	99381347	99381547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-71.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	173.23	160.22	135.2	144.39	167.32	183.75	120.91	115.26	202.59	174.23	189.44	111.84
Merged-chr2-30048858-3	chr2	30048762	30048962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	17.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	43.61	28.67	36.51	27.35	35.18	22.89	20.93	28.09	44.45	41.17	37.69	45.74
Merged-chr7-25120605-3	chr7	25120502	25120702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163555, intron 4 of 13)	intron (NM_001163555, intron 4 of 13)	11858.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	97.72	90.05	109.53	79.64	90.82	111.0	77.06	78.17	131.98	163.69	154.76	101.81
Merged-chr1-87650725-3	chr1	87650661	87650861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	30449.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	55.72	30.69	78.15	39.01	63.41	52.05	43.51	58.82	52.12	48.2	60.3	42.6
Merged-chr7-141476382-3	chr7	141476269	141476469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	-11.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	31.5	27.42	31.95	26.95	43.36	43.59	34.55	43.09	57.63	61.76	64.32	38.22
Merged-chr17-12991849-3	chr17	12991724	12991924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175394, intron 1 of 5)	CpG	435.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	25.44	25.4	25.67	17.7	37.64	37.63	28.23	29.72	48.19	60.25	59.29	34.15
Merged-chr8-126807476-3	chr8	126807320	126807520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41600.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	68.24	76.46	94.13	62.74	123.14	181.25	93.34	104.89	93.82	107.45	136.68	68.61
Merged-chr13-41605733-3	chr13	41605620	41605820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-496.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	89.24	85.02	94.7	67.17	107.59	112.89	70.75	86.58	133.35	132.56	147.73	71.11
Merged-chr8-117252868-3	chr8	117252750	117252950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4169.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	71.07	73.19	91.84	77.22	90.82	79.65	60.12	86.64	102.47	83.35	95.97	61.09
Merged-chr2-166155577-3	chr2	166155414	166155614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252578)	promoter-TSS (NM_001252578)	169.0	NM_001252579	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	12.52	20.12	16.54	19.71	10.64	19.44	14.95	11.3	15.14	11.05	19.6	10.65
Merged-chr10-77622300-3	chr10	77622193	77622393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-28.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	65.01	49.3	38.79	62.34	64.23	69.3	38.86	54.31	73.56	96.4	106.53	58.27
Merged-chr7-90039638-3	chr7	90039526	90039726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	10467.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	146.58	101.87	151.74	135.94	184.91	194.1	135.53	165.17	134.34	154.15	192.45	96.17
Merged-chr18-53250235-3	chr18	53250125	53250325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4563.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	39.17	36.22	41.64	67.97	39.68	46.41	49.16	60.08	43.07	27.62	58.79	35.09
Merged-chr11-109651091-3	chr11	109651049	109651249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313976, intron 1 of 10)	CpG	228.0	NM_001313976	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	45.63	40.75	42.78	46.25	33.14	44.84	51.15	35.02	63.14	68.79	77.38	64.85
Merged-chr19-40612339-3	chr19	40612238	40612438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026260)	promoter-TSS (NM_026260)	-28.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	169.59	127.78	189.96	127.1	158.73	191.59	119.25	144.67	142.01	150.13	179.89	82.08
Merged-chr16-27374286-3	chr16	27374165	27374365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4026.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	122.75	119.73	148.32	140.37	117.0	115.39	72.41	107.75	139.06	144.61	136.68	71.74
Merged-chr13-23531731-3	chr13	23531631	23531831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153173)	TTS (NM_153173)	687.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	50.07	46.53	54.76	46.66	33.14	43.9	42.19	49.37	69.63	42.68	108.54	38.22
Merged-chr15-81802576-3	chr15	81802471	81802671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	42.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	134.06	117.72	100.4	131.12	139.91	130.76	117.26	128.33	127.26	134.06	152.25	86.46
Merged-chr10-69222167-3	chr10	69222066	69222266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	MER63C|DNA|hAT-Blackjack	8972.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	32.71	36.47	41.64	27.75	35.59	17.25	13.62	35.1	31.47	30.13	37.18	17.86
Merged-chr2-4499479-3	chr2	4499379	4499579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-60275.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	26.65	24.4	35.37	39.01	28.64	40.45	29.56	37.21	28.52	20.08	27.13	21.3
Merged-chrX-169110220-3	chrX	169110140	169110340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109847, intron 1 of 14)	intron (NR_109847, intron 1 of 14)	-2638.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	22.21	11.82	14.83	27.75	19.23	21.01	40.19	34.54	24.59	27.11	30.65	26.94
Merged-chr13-58401613-3	chr13	58401475	58401675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_031761)	promoter-TSS (NR_031761)	542.0	NM_001360494	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	37.55	70.18	35.94	35.39	51.96	54.25	48.5	47.07	79.07	78.83	86.93	63.59
Merged-chr17-24171938-3	chr17	24171837	24172037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2259.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	68.65	59.11	68.45	59.12	52.77	87.17	40.19	47.89	122.54	114.48	122.61	76.12
Merged-chr18-6136677-1	chr18	6136577	6136777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	-579.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	21.8	33.2	14.26	24.13	24.55	26.65	28.23	18.62	25.37	23.1	27.13	21.3
Merged-chr2-18681101-3	chr2	18680990	18681190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007552, intron 1 of 9)	CpG	4072.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	60.97	53.58	54.19	50.27	33.96	57.07	21.59	44.89	81.04	66.78	64.32	55.45
Merged-chr2-164913664-3	chr2	164913567	164913767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1917.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	27.05	19.37	44.5	31.77	40.09	35.75	15.94	41.24	40.71	26.61	62.31	28.19
Merged-chr5-112343225-3	chr5	112343114	112343314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	119.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	52.9	44.52	55.33	39.42	61.77	63.03	52.82	53.22	55.47	59.75	49.75	46.68
Merged-chr14-122534244-3	chr14	122534146	122534346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-82.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	196.24	175.82	264.69	251.37	254.46	256.82	203.62	317.72	269.86	214.4	473.84	177.0
Merged-chr11-76482380-3	chr11	76482277	76482477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12118.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	37.15	34.21	40.5	24.94	37.23	54.56	24.25	34.57	38.35	51.72	52.76	17.23
Merged-chrX-99042556-3	chrX	99042455	99042655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199018)	promoter-TSS (NM_199018)	-26.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	41.99	40.24	37.65	53.49	52.37	54.25	36.87	62.5	54.48	60.25	54.27	30.07
Merged-chr4-137818539-3	chr4	137818441	137818641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22157.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	37.55	44.52	55.33	48.26	33.96	31.04	25.91	34.74	41.89	34.65	42.21	28.82
Merged-chr6-87838907-3	chr6	87838815	87839015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133934)	promoter-TSS (NM_133934)	-156.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	155.46	163.49	182.55	148.41	173.05	218.87	126.89	157.15	192.16	245.03	212.55	138.46
Merged-chr3-81113090-3	chr3	81112971	81113171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	B4A|SINE|B4	76655.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	16.15	27.17	35.37	29.36	27.41	17.25	11.63	29.66	33.63	20.59	28.64	15.66
Merged-chr2-32607855-3	chr2	32607749	32607949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	864.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	38.36	30.18	33.09	20.51	33.14	46.1	27.9	32.3	53.89	59.75	54.27	41.35
Merged-chr13-43778314-3	chr13	43778240	43778440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6772.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	61.78	54.83	58.19	41.43	69.55	86.23	64.77	60.34	71.0	63.77	80.4	44.17
Merged-chr14-50930041-1	chr14	50929941	50930141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	808.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	23.42	6.79	18.83	13.27	12.27	11.6	22.92	22.04	11.8	10.04	13.06	14.1
Merged-chr10-94147879-3	chr10	94147756	94147956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-75.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	32.71	39.74	49.06	37.0	56.87	65.54	31.89	42.11	69.43	71.8	74.87	42.6
Merged-chr5-43885214-3	chr5	43885128	43885328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	16419.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	39.17	50.31	59.9	67.57	58.5	42.02	42.85	78.2	55.47	33.14	51.76	29.76
Merged-chr18-60805892-3	chr18	60805813	60806013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2064.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	83.99	145.38	110.1	117.44	91.23	121.35	63.78	92.89	118.6	114.98	108.54	76.75
Merged-chr10-37320237-3	chr10	37320129	37320329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181303.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	51.69	65.4	59.33	33.38	53.59	81.84	48.5	27.31	76.12	79.83	87.93	32.89
Merged-chr14-70060500-3	chr14	70060377	70060577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028560)	TTS (NM_028560)	-16968.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	16.96	16.35	27.95	23.73	22.09	24.15	10.96	26.97	27.93	26.11	44.22	25.37
Merged-chr11-79527090-3	chr11	79527002	79527202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033711, exon 2 of 2)	3' UTR (NM_001033711, exon 2 of 2)	-3340.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	69.86	63.39	84.43	56.31	68.73	82.78	60.46	74.5	64.91	69.79	53.26	46.99
Merged-chr11-74770801-3	chr11	74770703	74770903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026197)	promoter-TSS (NM_026197)	-60.0	NM_026197	67493.0	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	44.42	61.88	41.64	37.81	44.59	67.42	32.22	31.85	68.05	71.3	38.19	48.56
Merged-chr9-114742935-3	chr9	114742820	114743020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	11717.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	129.21	110.92	141.47	140.77	119.46	150.51	97.99	126.79	137.29	117.99	162.8	104.0
Merged-chr8-105225179-3	chr8	105225069	105225269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145604)	promoter-TSS (NM_145604)	-19.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	90.05	89.54	68.45	80.44	74.46	104.73	59.79	78.14	102.28	84.86	108.54	67.67
Merged-chr6-82652623-3	chr6	82652519	82652719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025882, intron 1 of 3)	CpG	246.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	54.51	53.58	58.76	44.64	69.14	65.22	41.52	56.75	75.13	71.3	89.94	55.13
Merged-chr5-147748202-3	chr5	147748082	147748282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	62.59	77.22	122.65	79.23	108.41	112.26	108.62	86.89	88.71	115.99	117.08	67.67
Merged-chr16-91379171-3	chr16	91379079	91379279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	GC_rich|Low_complexity|Low_complexity	6396.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	20.19	6.04	7.42	23.73	20.05	17.87	23.58	20.75	17.9	5.52	15.07	6.58
Merged-chr2-93045646-3	chr2	93045553	93045753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177536, intron 1 of 6)	CpG	491.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	103.78	89.54	113.52	111.41	110.46	123.55	78.39	137.05	131.39	143.6	195.47	90.53
Merged-chr13-81783189-3	chr13	81783119	81783319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-28.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	172.42	140.35	152.88	111.41	167.32	166.51	130.88	185.44	246.45	248.04	285.41	149.43
Merged-chr6-136827719-1	chr6	136827619	136827819	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021714, intron 1 of 11)	CpG	497.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	19.38	14.09	25.67	14.88	13.09	17.87	20.26	21.56	31.27	34.14	34.67	24.12
Merged-chr19-16132578-3	chr19	16132467	16132667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008139)	promoter-TSS (NM_008139)	-264.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	129.21	115.45	93.55	106.58	110.87	119.47	84.7	115.43	118.6	107.95	168.83	54.82
Merged-chr5-115341212-3	chr5	115341035	115341235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	26.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	37.15	29.18	35.37	26.14	27.0	36.37	9.63	23.97	25.57	27.62	16.08	32.58
Merged-chr8-120619805-5	chr8	120619719	120619919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	14563.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	25.84	28.42	38.22	26.55	27.0	46.1	55.14	33.7	44.45	41.17	37.69	42.6
Merged-chr13-63256946-3	chr13	63256845	63257045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	16916.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	53.7	38.74	51.91	69.18	58.5	47.66	54.14	64.15	93.62	85.86	153.26	70.8
Merged-chr8-35135821-1	chr8	35135721	35135921	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-170131.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.04	1.01	3.42	1.21	1.64	2.82	3.99	3.22	24.19	21.59	40.2	13.47
Merged-chr4-126126923-3	chr4	126126801	126127001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 4 of 10)	intron (NM_028800, intron 4 of 10)	-21102.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	26.25	22.64	46.21	30.57	29.46	32.61	43.18	30.53	30.09	26.61	45.22	11.28
Merged-chr12-98628193-3	chr12	98628077	98628277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289572)	promoter-TSS (NM_001289572)	35.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	42.4	26.91	20.54	38.61	44.18	48.29	43.18	35.3	35.99	49.71	58.79	32.27
Merged-chr13-113242304-2	chr13	113242210	113242410	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32651.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	15.14	19.13	15.94	31.01	34.42	21.59	27.64	18.8
Merged-chr7-30413860-3	chr7	30413842	30414042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011662, intron 1 of 4)	intron (NM_011662, intron 1 of 4)	154.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	37.96	54.83	52.48	56.31	60.14	42.96	59.13	31.91	44.06	47.7	64.82	39.47
Merged-chr5-101972837-3	chr5	101972738	101972938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 4 of 66)	B2_Mm2|SINE|B2	97083.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	31.5	28.93	33.66	16.49	45.82	38.88	23.25	27.28	39.73	53.73	38.69	37.59
Merged-chr17-88064165-3	chr17	88064048	88064248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	784.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	16.96	17.61	17.68	17.29	21.68	10.66	14.28	21.28	16.13	19.08	30.65	20.99
Merged-chr15-44619133-3	chr15	44619056	44619256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-71.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	239.85	268.38	297.21	255.8	243.42	264.66	254.78	296.02	408.72	389.13	566.3	233.07
Merged-chr16-94526957-3	chr16	94526863	94527063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-334.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	110.64	99.35	114.09	118.25	148.5	143.3	88.36	115.82	172.3	155.65	218.58	88.65
Merged-chr18-66476539-3	chr18	66476431	66476631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17927.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	33.52	30.94	43.93	25.74	54.82	85.61	37.54	39.06	62.35	53.22	92.96	26.94
Merged-chr7-122297857-3	chr7	122297749	122297949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	8724.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	27.05	21.13	22.25	26.95	19.23	15.68	12.95	25.74	29.31	9.04	35.17	20.68
Merged-chr4-45531254-3	chr4	45531138	45531338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-410.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	48.86	64.64	71.88	61.54	51.14	45.78	39.2	58.6	75.92	72.3	87.93	53.88
Merged-chr12-25143663-3	chr12	25143549	25143749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14475.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	60.97	42.01	83.86	37.4	56.05	49.86	17.61	43.43	73.17	37.66	58.29	29.76
Merged-chr11-90029552-1	chr11	90029452	90029652	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026433)	promoter-TSS (NM_026433)	-796.0	NM_026433	67888.0	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.81	0.75	2.28	4.02	2.45	1.25	4.65	2.83	24.19	26.61	25.63	15.04
Merged-chr16-50737778-3	chr16	50737677	50737877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5004.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	30.28	27.92	22.82	28.15	45.41	53.31	40.52	50.44	49.17	66.78	62.81	22.87
Merged-chr18-53246636-3	chr18	53246512	53246712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	950.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	39.57	34.21	53.62	43.04	86.32	101.28	105.3	84.59	62.35	36.15	64.82	38.85
Merged-chr13-23526594-3	chr13	23526499	23526699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4445.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	17.77	22.64	22.25	20.11	17.18	21.64	15.61	20.22	24.39	39.67	20.6	13.16
Merged-chr1-87181109-3	chr1	87181015	87181215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2199.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	6.06	11.82	16.54	5.63	27.82	31.04	20.26	30.56	24.78	25.61	21.61	16.92
Merged-chr7-34389738-3	chr7	34389644	34389844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-39.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	148.19	132.81	138.62	102.96	139.1	185.32	93.67	121.88	169.55	154.15	209.03	92.73
Merged-chr4-59862161-2	chr4	59862058	59862258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	(TG)n|Simple_repeat|Simple_repeat	52898.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	18.57	13.58	17.68	18.5	26.59	23.52	22.92	20.47	3.54	4.02	10.05	2.19
Merged-chr17-71190795-3	chr17	71190692	71190892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6814.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	20.59	30.69	36.51	21.72	29.46	20.07	16.94	23.24	25.77	28.62	42.71	26.94
Merged-chr18-61448334-6	chr18	61448203	61448403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36304.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	32.3	26.91	19.4	43.84	42.96	33.87	24.58	30.31	25.37	36.65	27.13	20.99
Merged-chr14-14012545-3	chr14	14012394	14012594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	3.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	62.18	29.93	53.05	44.24	54.0	29.16	49.83	68.02	43.66	39.67	52.26	28.51
Merged-chr2-158177176-3	chr2	158177083	158177283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14825.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	38.76	16.6	46.21	39.01	47.05	41.71	55.14	62.05	36.78	32.64	58.79	26.0
Merged-chr2-163017246-3	chr2	163017115	163017315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172150)	promoter-TSS (NM_172150)	-138.0	NM_172150	245866.0	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	50.88	40.24	32.52	46.66	52.77	66.48	46.17	53.75	58.42	107.45	73.86	59.21
Merged-chr6-125147013-3	chr6	125146921	125147121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1797.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	153.44	113.69	107.82	125.89	144.0	179.05	87.03	150.67	151.25	142.1	203.51	90.85
Merged-chr2-34609685-3	chr2	34609601	34609801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	145531.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	39.17	53.07	37.08	47.06	44.59	63.97	31.56	36.48	65.1	47.2	58.29	41.04
Merged-chr6-42392102-3	chr6	42391989	42392189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8149.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	39.98	33.96	55.9	60.33	54.82	52.99	52.48	57.93	64.91	66.78	79.39	52.0
Merged-chr15-84246412-3	chr15	84246309	84246509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	14366.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	26.25	18.86	29.66	22.52	46.23	45.15	23.58	33.34	64.51	45.69	56.78	36.34
Merged-chr4-115640762-3	chr4	115640666	115640866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007823, intron 3 of 11)	intron (NM_007823, intron 3 of 11)	6939.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	21.4	20.37	56.48	46.25	45.82	21.01	31.89	34.43	70.41	40.17	82.91	41.04
Merged-chr18-73541777-3	chr18	73541683	73541883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30922.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	22.61	16.85	18.83	17.7	27.41	31.98	20.26	25.77	24.19	18.08	32.66	14.1
Merged-chr4-150656137-3	chr4	150656045	150656245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3971.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	46.44	58.61	30.23	26.95	28.23	83.1	25.91	23.72	71.0	58.24	55.27	30.07
Merged-chr17-45563833-3	chr17	45563727	45563927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-109.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	114.68	119.98	100.4	101.76	125.19	176.23	84.7	79.26	157.55	166.7	222.6	95.55
Merged-chr6-47636758-3	chr6	47636666	47636866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18328.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	5.25	19.12	12.55	22.52	17.18	17.25	15.94	15.14	24.39	20.59	19.09	20.36
Merged-chr4-150009100-3	chr4	150008993	150009193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-70.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	85.6	59.36	65.03	65.56	96.96	98.15	47.5	78.5	85.56	84.35	116.58	41.66
Merged-chr17-27008517-3	chr17	27008412	27008612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	-9523.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	20.19	14.84	26.81	14.48	17.18	21.95	14.28	28.26	19.28	18.08	36.68	18.8
Merged-chr7-121080876-3	chr7	121080756	121080956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-2582.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	19.38	25.15	38.79	45.45	38.46	37.63	26.57	33.34	51.14	35.65	30.15	19.42
Merged-chr7-35586192-3	chr7	35586085	35586285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-62.0	NM_145633	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	90.85	84.26	109.53	120.66	140.73	137.34	84.7	152.64	155.78	109.46	226.12	103.06
Merged-chrX-144338598-3	chrX	144338497	144338697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037145, intron 5 of 26)	RMER10B|LTR|ERVL	20631.0	NM_026247	67574.0	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031	asparagine-linked glycosylation 13	protein-coding	23.42	14.34	26.24	28.96	35.59	21.32	28.9	39.56	20.26	35.65	35.68	30.7
Merged-chr7-25129721-3	chr7	25129624	25129824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2736.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	53.3	42.51	47.92	47.46	60.14	77.77	64.11	62.38	91.07	66.28	124.11	66.41
Merged-chr17-26509641-3	chr17	26509556	26509756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1184.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	104.18	89.04	79.86	112.62	141.55	126.68	83.04	134.44	125.88	160.17	164.31	88.97
Merged-chr7-126566450-3	chr7	126566318	126566518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-52.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	32.3	17.61	17.11	14.08	27.82	32.3	19.6	20.89	37.76	33.14	36.18	24.43
Merged-chr4-103119777-1	chr4	103119677	103119877	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	CpG	387.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	24.63	15.09	20.54	26.55	22.5	23.52	21.92	26.1	21.64	22.09	41.71	31.33
Merged-chr13-23533776-3	chr13	23533670	23533870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-141.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	17.36	16.85	37.08	36.6	40.09	25.09	33.55	41.47	39.93	40.17	57.79	22.87
Merged-chr1-64295506-3	chr1	64295412	64295612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-174123.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	92.07	49.8	90.7	69.98	101.46	122.29	84.37	77.3	87.53	94.9	96.98	34.77
Merged-chr12-4211264-3	chr12	4211177	4211377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 19 of 21)	intron (NM_001159537, intron 19 of 21)	22688.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	124.37	125.26	108.96	115.43	157.91	178.42	88.36	134.97	152.04	139.08	170.34	92.41
Merged-chr11-73177716-3	chr11	73177609	73177809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	626.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	20.19	25.66	26.81	18.5	28.64	34.49	24.58	24.87	31.08	34.14	43.72	20.68
Merged-chr1-72710918-1	chr1	72710818	72711018	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	-342.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	10.9	9.31	5.7	4.42	8.59	10.35	7.64	9.39	18.29	28.12	20.6	11.9
Merged-chr17-12991304-3	chr17	12991203	12991403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	956.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	31.09	19.87	33.66	24.53	16.36	30.42	20.59	30.76	33.24	32.13	52.76	34.77
Merged-chr4-117550291-3	chr4	117550192	117550392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	-32.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	126.79	125.26	171.14	150.02	137.05	167.13	99.98	161.97	188.62	174.73	224.61	107.76
Merged-chr2-148477592-1	chr2	148477492	148477692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-34057.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	39.57	22.64	29.66	35.8	2.05	0.0	1.99	1.77	0.79	4.02	2.01	2.82
Merged-chr8-92356120-3	chr8	92355997	92356197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033641)	promoter-TSS (NR_033641)	23.0	NR_110452	71296.0	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	58.15	70.43	54.76	64.75	66.27	67.1	88.03	75.0	46.22	60.25	62.31	44.48
Merged-chr17-67305007-3	chr17	67304909	67305109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	49450.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	68.65	52.82	69.6	88.89	86.32	100.66	96.0	99.36	164.23	169.21	208.53	103.06
Merged-chr10-91171673-3	chr10	91171549	91171749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011605)	promoter-TSS (NM_011605)	-30.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	107.01	111.18	90.7	91.3	142.78	130.76	81.71	146.83	151.84	145.11	209.03	115.28
Merged-chr11-79224691-3	chr11	79224588	79224788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18336.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	25.44	20.88	28.52	22.52	28.23	38.88	17.61	17.05	33.24	30.13	39.19	27.57
Merged-chr9-15034535-3	chr9	15034416	15034616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10962.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	23.42	20.37	15.97	42.23	31.91	21.01	32.55	36.59	22.82	27.11	28.64	14.72
Merged-chr4-6415422-3	chr4	6415298	6415498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38873.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	195.44	163.74	191.1	225.23	191.87	235.49	231.19	269.52	284.02	264.11	321.09	149.74
Merged-chr19-45005658-3	chr19	45005558	45005758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	-5.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	33.11	23.64	41.64	17.7	34.36	53.93	18.27	34.79	48.39	47.2	38.69	16.6
Merged-chr9-45828662-3	chr9	45828549	45828749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-11.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	46.84	31.44	48.49	43.04	61.37	53.31	27.57	48.11	65.1	60.25	97.98	36.03
Merged-chr12-51866479-3	chr12	51866371	51866571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36935.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	68.24	58.61	87.85	73.6	85.09	111.63	71.08	109.29	68.84	92.39	89.94	66.73
Merged-chr17-6816400-3	chr17	6816299	6816499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33619.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	89.24	96.34	96.98	49.47	93.68	151.14	104.3	76.91	114.67	120.51	131.15	57.64
Merged-chr4-116668437-3	chr4	116668355	116668555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16781.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	54.51	55.84	82.15	76.42	83.46	56.13	57.13	60.48	78.68	104.94	104.01	66.1
Merged-chr7-80715431-3	chr7	80715320	80715520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 37 of 37)	intron (NM_016721, intron 37 of 37)	-26543.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	27.46	30.69	50.2	29.76	86.32	101.6	73.74	78.31	61.76	96.4	75.87	41.98
Merged-chr4-48045105-3	chr4	48045005	48045205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-200.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	99.33	105.39	154.59	107.79	126.0	149.89	88.36	135.9	177.22	155.15	218.58	129.07
Merged-chr2-60172808-3	chr2	60172698	60172898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37138.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	44.01	30.94	61.04	63.15	40.5	35.43	37.87	64.23	30.88	45.69	46.73	25.06
Merged-chr16-20804679-3	chr16	20804569	20804769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70158.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	12.11	13.08	29.66	5.63	20.05	27.28	10.96	17.58	21.24	31.63	25.12	13.78
Merged-chr1-182517552-3	chr1	182517443	182517643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009794)	promoter-TSS (NM_009794)	67.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	44.42	31.69	23.39	25.74	29.46	42.65	29.56	36.79	40.32	31.13	43.21	19.11
Merged-chr11-50109017-3	chr11	50108918	50109118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-22342.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	59.76	59.61	70.17	69.18	78.96	62.4	63.78	66.17	66.09	69.79	131.15	57.64
Merged-chr3-95994670-3	chr3	95994564	95994764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1175.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	20.59	20.63	42.78	30.97	18.0	15.68	16.61	23.92	20.06	18.58	23.62	19.11
Merged-chr2-59188816-3	chr2	59188711	59188911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	Lx7|LINE|L1	27961.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	25.44	19.12	21.68	22.12	25.77	35.75	16.94	39.0	39.34	32.13	48.74	24.75
Merged-chr19-34206364-3	chr19	34206257	34206457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-11151.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	41.99	32.95	31.38	34.19	28.23	34.49	16.61	28.32	24.39	26.11	34.67	13.16
Merged-chr1-34821621-3	chr1	34821523	34821723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 3 of 6)	L1ME2|LINE|L1	19901.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	20.59	6.04	29.66	23.73	35.18	37.32	41.19	38.86	35.99	31.63	44.72	16.6
Merged-chr7-12978202-3	chr7	12978090	12978290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168561, exon 1 of 5)	5' UTR (NM_001168561, exon 1 of 5)	342.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	285.89	239.2	269.26	303.26	343.24	379.74	318.22	431.83	362.3	306.28	557.25	212.39
Merged-chr5-123930686-3	chr5	123930583	123930783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134767)	promoter-TSS (NM_001134767)	-6.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	82.78	52.57	98.12	46.66	78.14	93.76	36.54	67.23	94.61	99.42	106.02	67.98
Merged-chr10-128494223-1	chr10	128494123	128494323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-337.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	38.36	22.13	21.11	26.55	31.5	26.03	24.25	25.32	35.6	34.65	36.68	30.07
Merged-chr10-44631775-3	chr10	44631674	44631874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-173026.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	83.18	71.43	61.04	61.94	80.59	92.5	58.13	85.54	89.49	90.88	90.45	44.8
Merged-chr7-127345617-3	chr7	127345557	127345757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-343.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	33.92	23.14	32.52	20.51	27.41	51.74	14.62	22.96	71.59	74.81	50.75	47.3
Merged-chr4-9131806-3	chr4	9131714	9131914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-137479.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	93.68	77.72	100.4	120.66	100.64	134.84	130.54	171.28	121.55	111.47	154.76	85.52
Merged-chr5-103752951-3	chr5	103752870	103753070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-1192.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	92.47	101.62	90.7	39.01	93.68	138.29	63.11	41.78	132.76	117.99	79.89	32.58
Merged-chr3-106483505-3	chr3	106483393	106483593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1043.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	24.63	22.39	28.52	20.11	23.32	37.0	20.26	28.01	27.34	27.62	25.12	17.23
Merged-chr10-77606109-3	chr10	77606002	77606202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	5.0	NM_019929	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	72.28	51.06	31.95	43.84	48.68	73.69	25.24	30.42	65.5	77.83	67.33	33.21
Merged-chr5-24752174-3	chr5	24752006	24752206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153076, intron 3 of 3)	intron (NM_153076, intron 3 of 3)	5737.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	18.98	10.82	13.12	11.26	19.64	12.86	21.26	24.45	24.39	22.09	33.16	21.62
Merged-chr19-12796759-3	chr19	12796667	12796867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	574.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	73.09	57.1	63.89	53.49	65.05	95.95	50.16	64.09	61.37	95.4	81.4	46.68
Merged-chr15-62055456-1	chr15	62055356	62055556	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	16199.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	10.5	6.54	10.84	3.22	13.5	7.21	5.31	15.06	8.85	6.53	12.56	12.84
Merged-chr12-35292165-3	chr12	35292058	35292258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97261.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	25.84	15.34	22.82	33.78	56.05	30.1	55.47	58.54	39.93	37.66	35.17	16.6
Merged-chr6-7738070-3	chr6	7737964	7738164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	-44882.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	88.43	93.57	107.25	109.0	102.28	147.07	101.98	65.02	123.91	133.06	133.16	79.88
Merged-chr4-16086756-3	chr4	16086636	16086836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72848.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	18.17	24.4	22.25	22.93	42.55	45.47	30.23	41.1	65.3	61.26	53.77	36.34
Merged-chr5-64795921-3	chr5	64795795	64795995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7628.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	112.26	109.16	126.07	125.08	101.87	148.01	109.62	135.37	129.62	158.67	150.74	81.76
Merged-chr4-133830567-3	chr4	133830506	133830706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	44125.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	21.8	11.07	21.68	13.67	27.41	19.44	13.29	13.71	36.98	33.64	34.17	19.74
Merged-chr10-24638804-1	chr10	24638704	24638904	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43362.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.63	2.52	3.99	4.02	3.27	3.76	13.29	15.93	3.15	1.51	4.02	2.19
Merged-chr16-57390445-3	chr16	57390307	57390507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37130.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	12.92	12.83	12.55	8.85	18.0	23.52	32.55	18.31	20.46	19.08	38.69	19.74
Merged-chr9-123366889-3	chr9	123366791	123366991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348167)	promoter-TSS (NM_001348167)	-36.0	NM_001348167	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	76.32	55.34	59.33	60.33	65.87	74.0	39.86	67.21	92.64	83.35	102.0	63.59
Merged-chr9-109054908-3	chr9	109054863	109055063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	97.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	191.4	169.78	140.9	150.82	162.41	231.73	163.76	127.99	170.53	229.46	176.87	101.19
Merged-chr3-157925177-3	chr3	157925090	157925290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145953)	promoter-TSS (NM_145953)	-127.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	31.09	33.45	40.5	43.84	26.59	37.94	39.86	49.77	38.55	22.09	45.22	23.49
Merged-chr12-99523096-3	chr12	99523010	99523210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-40731.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	25.44	16.35	34.23	49.87	30.27	40.76	24.91	42.87	37.76	32.13	40.2	31.95
Merged-chr11-51858391-1	chr11	51858291	51858491	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-761.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.44	12.32	5.7	6.44	14.32	10.98	18.27	11.3	10.62	18.08	14.57	18.8
Merged-chr1-89070223-3	chr1	89070109	89070309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-206.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	189.38	214.05	221.34	215.58	225.42	300.4	139.84	198.84	301.92	343.94	383.39	173.55
Merged-chr14-79390744-3	chr14	79390662	79390862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025832)	promoter-TSS (NM_025832)	-94.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	109.83	64.89	92.41	103.37	108.82	101.91	71.08	100.37	120.77	125.02	137.18	81.76
Merged-chr15-73620865-3	chr15	73620741	73620941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3517.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	40.78	41.0	61.61	55.91	47.87	68.05	52.15	57.62	64.12	77.83	78.39	57.01
Merged-chr16-73756887-2	chr16	73756788	73756988	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	585179.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.4	0.0	2.28	0.4	20.46	14.11	15.28	32.38	28.32	20.08	61.3	15.04
Merged-chr10-40128679-3	chr10	40128591	40128791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	13563.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	123.97	117.97	121.51	135.94	142.37	194.73	122.9	156.95	174.66	159.67	203.0	103.38
Merged-chr11-82032807-3	chr11	82032720	82032920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2757.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	19.79	19.87	30.23	23.33	17.59	23.2	12.29	23.5	26.16	21.09	48.24	17.23
Merged-chr1-80785318-3	chr1	80785215	80785415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26762.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	22.61	30.43	35.37	32.18	55.23	50.49	43.51	46.63	57.24	36.65	44.22	30.7
Merged-chr16-11001893-3	chr16	11001792	11001992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7006.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	116.29	105.39	187.11	140.37	146.46	183.13	162.1	173.8	167.38	164.69	234.66	111.84
Merged-chr5-105655685-1	chr5	105655585	105655785	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44284.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.44	4.02	1.14	10.05	4.09	3.14	9.63	15.25	1.97	2.01	0.0	1.25
Merged-chr1-152554328-3	chr1	152554232	152554432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346119, exon 6 of 18)	exon (NM_001346119, exon 6 of 18)	70885.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	67.43	61.12	82.72	66.77	71.59	99.4	58.46	89.75	78.87	59.25	81.4	67.67
Merged-chr7-83658850-3	chr7	83658744	83658944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-3349.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	21.4	18.11	19.97	21.72	24.96	26.03	25.24	26.94	37.17	29.62	31.66	20.99
Merged-chr6-31113742-3	chr6	31113626	31113826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-50633.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	47.65	56.09	51.91	63.15	67.09	72.12	94.67	108.73	89.3	81.84	142.2	58.27
Merged-chr11-94677457-3	chr11	94677322	94677522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	71.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	37.55	39.99	30.8	46.66	45.41	50.8	28.9	34.79	54.09	57.74	52.26	37.59
Merged-chr11-115536356-3	chr11	115536252	115536452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133354)	promoter-TSS (NM_133354)	-122.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	108.62	72.44	70.74	57.11	101.46	123.55	66.1	62.24	86.35	89.37	75.87	48.24
Merged-chr4-116221216-3	chr4	116221131	116221331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	-185.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	103.78	91.56	115.8	108.19	147.69	148.01	72.08	137.97	177.41	191.3	242.7	99.93
Merged-chr15-76660204-3	chr15	76660104	76660304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	4.0	NM_001276322	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	106.2	112.18	101.54	109.8	130.5	186.89	81.38	115.04	154.79	168.71	214.06	91.16
Merged-chr17-21423198-3	chr17	21423091	21423291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-36.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	22.61	17.86	26.81	32.58	28.64	28.85	39.53	40.01	42.68	40.67	102.0	31.95
Merged-chr16-87713137-3	chr16	87713027	87713227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	14173.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	28.27	12.58	29.09	30.16	18.41	28.85	27.24	33.81	31.27	26.61	34.67	29.76
Merged-chr7-3694286-3	chr7	3694194	3694394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	-214.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	37.15	39.99	43.93	28.56	39.68	57.38	25.91	26.47	41.3	43.68	62.31	32.58
Merged-chr3-9038535-3	chr3	9038429	9038629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23435.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	31.09	25.91	25.67	29.36	44.59	39.82	25.24	36.62	48.39	52.72	101.5	43.23
Merged-chr14-118371500-1	chr14	118371400	118371600	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045624, intron 3 of 5)	ORR1E|LTR|ERVL-MaLR	5622.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	10.09	2.77	4.56	6.44	14.32	14.42	20.59	22.37	4.52	2.01	6.53	1.88
Merged-chr16-11006223-3	chr16	11006080	11006280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2718.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	125.58	95.08	221.34	156.46	137.46	154.28	165.09	225.73	158.92	136.07	237.17	138.46
Merged-chr14-62838565-3	chr14	62838467	62838667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106174)	TTS (NR_106174)	846.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	33.92	36.97	38.22	42.63	17.59	29.16	16.61	30.11	31.67	41.17	38.19	23.49
Merged-chr17-29380705-4	chr17	29380568	29380768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	19754.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	12.11	15.34	21.11	15.28	11.45	7.84	14.95	15.31	15.74	24.6	12.06	10.02
Merged-chr5-115522018-3	chr5	115521924	115522124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	L1M5|LINE|L1	15348.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	45.23	31.44	63.89	51.48	77.32	80.9	55.47	71.41	72.18	63.77	86.43	43.54
Merged-chr9-7222747-3	chr9	7222653	7222853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38248.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	78.74	73.7	92.41	96.93	99.82	105.67	130.88	102.76	130.01	133.56	162.3	71.42
Merged-chr2-152686971-3	chr2	152686883	152687083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-165.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	97.31	83.76	59.33	67.17	74.46	121.04	63.11	50.69	99.92	128.54	90.95	64.53
Merged-chr15-74923617-3	chr15	74923510	74923710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31441.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	31.5	45.28	41.07	53.49	21.68	27.28	21.59	30.31	54.88	39.67	66.33	28.51
Merged-chr13-34076895-3	chr13	34076768	34076968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009450, intron 1 of 3)	intron (NM_009450, intron 1 of 3)	1140.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	41.99	28.93	66.17	40.22	52.37	52.68	33.22	41.19	49.17	42.18	71.86	32.89
Merged-chr14-120911681-3	chr14	120911576	120911776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023579, intron 1 of 25)	CpG	482.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	31.9	40.5	46.78	32.58	45.0	49.86	52.48	51.25	53.11	43.18	57.79	35.4
Merged-chr1-132312899-3	chr1	132312804	132313004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3221.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	38.36	31.69	23.39	29.76	32.32	39.82	27.24	33.53	40.32	34.14	44.22	30.07
Merged-chr14-18234115-3	chr14	18234025	18234225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4981.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	129.21	119.48	152.31	152.03	109.23	124.49	107.29	160.96	162.66	141.59	176.37	78.63
Merged-chr2-90745391-3	chr2	90745255	90745455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-15.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	184.53	182.11	153.45	186.22	241.37	197.86	132.2	162.42	222.26	275.15	255.76	170.73
Merged-chr8-84218343-3	chr8	84218253	84218453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-9446.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	23.42	32.95	42.21	36.6	54.0	44.21	25.58	35.05	25.18	18.08	26.63	19.42
Merged-chr3-88410082-4	chr3	88410011	88410211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178696)	TTS (NM_178696)	286.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	46.03	50.81	46.78	22.12	57.27	76.83	29.56	54.08	92.44	101.43	93.46	64.53
Merged-chr7-19693620-3	chr7	19693543	19693743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-984.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	46.03	30.94	73.02	71.59	63.41	45.15	79.39	76.6	70.61	62.26	115.07	45.11
Merged-chr16-18498811-3	chr16	18498807	18499007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023120)	promoter-TSS (NM_023120)	36.0	NR_104347	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	14.54	26.66	9.7	17.29	18.41	19.13	17.27	19.6	39.53	31.63	41.71	20.68
Merged-chr4-132639002-3	chr4	132638921	132639121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_211357)	promoter-TSS (NM_211357)	-25.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	65.41	42.26	47.92	40.22	47.46	66.48	37.54	51.98	80.45	71.8	88.94	45.11
Merged-chr6-89286926-3	chr6	89286841	89287041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1216.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	39.17	24.65	21.68	33.78	44.18	52.37	17.94	44.02	53.3	52.72	39.7	29.45
Merged-chr8-105497024-3	chr8	105496916	105497116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175160)	promoter-TSS (NM_175160)	-114.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	30.28	24.15	17.11	34.19	34.36	31.36	30.56	31.12	35.01	32.13	19.6	21.3
Merged-chr18-53899340-3	chr18	53899233	53899433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 2 of 12)	intron (NM_152809, intron 2 of 12)	37220.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	25.04	23.14	28.52	36.6	36.41	37.94	20.59	42.95	34.03	24.6	44.22	21.93
Merged-chr4-16013900-3	chr4	16013805	16014005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-17.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	163.54	162.24	192.81	141.57	201.28	200.06	158.11	253.12	203.57	225.45	294.45	125.62
Merged-chr5-28004602-3	chr5	28004509	28004709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66803.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	13.73	18.61	27.95	16.49	18.0	28.22	15.61	38.1	46.03	44.19	45.73	20.36
Merged-chr7-116494898-3	chr7	116494774	116494974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9495.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	20.19	12.07	17.68	23.73	58.5	33.24	39.86	45.11	32.65	38.16	36.18	25.37
Merged-chr4-116708461-3	chr4	116708368	116708568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-83.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	120.33	69.42	148.32	157.66	137.05	118.84	138.18	159.48	144.76	123.02	216.57	132.51
Merged-chr4-155249397-3	chr4	155249275	155249475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-591.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	32.71	19.62	17.11	18.5	14.73	23.83	9.97	20.05	28.72	29.12	30.65	17.86
Merged-chr10-25331502-1	chr10	25331402	25331602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-28296.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	14.54	18.61	22.82	20.11	33.14	8.78	12.95	26.33	25.37	15.57	25.12	10.34
Merged-chr12-73680435-3	chr12	73680326	73680526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	95630.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	33.11	15.85	37.65	26.95	45.41	28.22	16.94	49.79	31.47	24.1	33.67	16.92
Merged-chr19-5930394-3	chr19	5930291	5930491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5575.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	133.25	123.5	103.25	81.65	106.37	154.9	88.36	54.34	132.76	145.61	175.87	49.18
Merged-chr5-140648686-2	chr5	140648571	140648771	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	CpG	360.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	8.08	3.77	9.13	10.46	13.5	10.35	11.96	7.43	13.96	16.57	15.07	8.46
Merged-chr2-79634747-2	chr2	79634648	79634848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-677.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	13.33	10.31	7.99	17.29	10.64	4.7	10.63	9.76	8.26	10.04	13.57	6.27
Merged-chr6-116668887-1	chr6	116668787	116668987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4949.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	15.34	18.36	21.68	5.23	17.18	26.34	7.97	4.63	18.1	35.65	27.13	7.52
Merged-chr1-151595086-3	chr1	151594997	151595197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	23724.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	32.3	24.4	27.95	37.4	70.37	43.59	37.2	64.65	35.4	27.62	28.14	24.75
Merged-chr2-181864337-3	chr2	181864238	181864438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-22.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	126.79	141.61	152.31	174.96	197.6	206.64	154.13	225.48	184.89	159.17	235.66	129.69
Merged-chr9-44361727-3	chr9	44361666	44361866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357393)	promoter-TSS (NM_001357393)	-96.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	47.65	32.7	39.93	15.69	29.05	29.79	15.61	26.89	52.12	22.59	27.13	21.3
Merged-chr5-105700634-3	chr5	105700536	105700736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-174.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	113.47	61.12	89.56	66.77	117.82	78.39	68.43	88.65	98.15	82.85	110.04	57.64
Merged-chrUn_JH584304-44254-1	chrUn_JH584304	44154	44354	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15435.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	65.1	68.79	52.76	36.65
Merged-chr10-77971352-3	chr10	77971267	77971467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1495.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	20.59	15.09	27.95	25.34	36.0	25.09	35.54	44.75	46.22	29.62	32.16	26.63
Merged-chr2-35979838-3	chr2	35979735	35979935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029774)	promoter-TSS (NM_029774)	-211.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	54.51	61.12	43.93	54.7	44.59	61.15	51.82	60.14	94.61	96.91	96.48	46.99
Merged-chr14-69707533-3	chr14	69707409	69707609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301652)	promoter-TSS (NM_001301652)	-16.0	NM_001301652	71843.0	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	41.99	34.21	63.32	44.64	35.59	52.99	33.22	48.93	37.76	40.17	47.74	25.37
Merged-chr15-11399792-3	chr15	11399682	11399882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-124.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	216.43	233.17	258.99	248.16	351.83	346.18	229.53	337.94	383.35	323.86	380.88	225.55
Merged-chr7-49190829-1	chr7	49190729	49190929	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-28671.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	6.06	1.51	9.7	23.73	2.86	4.08	11.29	18.03	4.52	5.52	10.05	6.58
Merged-chr5-147060181-2	chr5	147060080	147060280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	16392.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	34.32	37.23	50.77	35.39	47.05	40.14	23.92	54.87	6.69	0.0	13.57	1.88
Merged-chr18-65430822-3	chr18	65430693	65430893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-204.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	228.14	200.22	218.48	231.67	202.1	314.51	191.99	230.52	294.25	337.92	420.58	206.76
Merged-chr11-96944061-3	chr11	96943967	96944167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003293)	promoter-TSS (NR_003293)	-48.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	100.55	90.05	100.4	124.68	86.32	139.54	68.43	94.23	147.52	128.04	125.62	78.0
Merged-chr3-109251976-3	chr3	109251888	109252088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88695.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	28.67	28.67	49.06	49.87	42.14	29.48	22.59	45.45	48.58	38.66	45.22	50.44
Merged-chr6-122650755-3	chr6	122650653	122650853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24329.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	62.18	67.41	72.45	45.85	95.32	117.59	48.16	43.79	106.6	119.0	134.67	41.35
Merged-chr12-4082816-3	chr12	4082667	4082867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153082, exon 1 of 7)	5' UTR (NM_153082, exon 1 of 7)	193.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	39.57	44.27	41.07	39.82	50.73	75.57	56.47	49.07	51.53	50.71	46.73	33.21
Merged-chr14-51063501-3	chr14	51063395	51063595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6253.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	62.59	47.79	38.79	37.81	34.36	46.72	36.54	42.31	65.5	53.73	65.32	35.71
Merged-chr17-15499825-3	chr17	15499725	15499925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-63.0	NM_013684	21374.0	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	100.55	85.27	105.53	82.45	104.32	123.23	81.05	120.03	135.71	125.53	144.71	62.03
Merged-chr2-164868655-3	chr2	164868564	164868764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10704.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	78.34	86.02	53.05	82.45	77.73	105.67	60.46	88.49	68.45	70.8	104.01	54.2
Merged-chr10-78440147-3	chr10	78440066	78440266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	4991.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	22.61	24.15	41.64	22.12	26.18	25.71	35.87	30.73	51.73	21.09	59.8	26.31
Merged-chr7-12921841-3	chr7	12921741	12921941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-470.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	55.72	60.62	64.46	43.84	86.73	109.12	51.82	75.9	82.61	99.42	101.0	65.16
Merged-chr6-32718092-3	chr6	32717991	32718191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129899.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	33.52	31.19	53.62	67.97	34.36	43.59	38.53	51.42	36.39	24.1	53.77	41.66
Merged-chr7-126799271-3	chr7	126799169	126799369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-15.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	209.17	188.39	237.88	144.79	187.37	232.67	132.87	163.63	206.72	260.09	312.54	135.33
Merged-chr11-57644549-3	chr11	57644471	57644671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-871.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	37.15	24.9	29.66	24.53	20.46	22.58	23.25	29.38	39.73	30.13	58.79	34.46
Merged-chr11-88291480-1	chr11	88291380	88291580	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2563.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	8.48	5.79	9.13	2.01	11.45	22.26	18.93	17.38	0.2	0.0	2.51	0.0
Merged-chr11-69070821-3	chr11	69070712	69070912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025838)	promoter-TSS (NM_025838)	3.0	NM_028336	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	45.63	52.32	43.35	27.75	40.5	46.1	37.87	26.13	48.78	67.28	43.72	41.04
Merged-chr6-124493045-3	chr6	124492889	124493089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-124.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	43.61	32.95	47.35	24.13	45.41	54.25	26.91	31.65	55.47	50.21	45.73	33.83
Merged-chr2-66192002-3	chr2	66191911	66192111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64606.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	20.19	21.88	41.64	31.37	22.5	28.22	38.2	40.99	21.44	21.59	19.6	15.98
Merged-chr6-136659453-3	chr6	136659354	136659554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	2439.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	66.22	54.83	57.62	64.35	63.82	79.96	39.86	64.46	83.99	63.27	69.85	54.51
Merged-chr1-162004259-1	chr1	162004159	162004359	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-710.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	0.81	1.51	0.0	0.4	0.82	0.63	1.99	1.35	12.0	5.02	20.6	5.33
Merged-chr1-180957266-3	chr1	180957161	180957361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 8 of 22)	MTD|LTR|ERVL-MaLR	14743.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	201.9	173.05	229.89	217.99	218.46	222.95	206.61	264.95	183.12	176.74	284.91	130.95
Merged-chr5-66004998-3	chr5	66004881	66005081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027961)	promoter-TSS (NR_027961)	-696.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	20.19	22.13	18.83	22.93	27.82	32.61	27.57	29.58	26.55	20.59	28.14	13.47
Merged-chr11-69579394-3	chr11	69579292	69579492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144824)	promoter-TSS (NM_144824)	-68.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	69.45	75.71	49.06	51.08	76.09	99.09	48.83	47.5	74.15	60.25	59.8	31.01
Merged-chr9-109038586-3	chr9	109038473	109038673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284332)	promoter-TSS (NM_001284332)	6.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	33.92	19.37	37.65	22.93	46.23	36.37	20.59	30.87	50.75	68.79	58.29	31.33
Merged-chr4-89524825-3	chr4	89524732	89524932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163366.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	21.8	28.67	18.83	20.91	32.32	47.35	21.92	47.47	32.45	34.65	38.19	19.11
Merged-chr3-133544330-3	chr3	133544223	133544423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	67.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	39.98	41.25	49.63	32.18	62.18	42.65	35.21	70.71	82.81	55.73	92.96	37.28
Merged-chr3-116615876-3	chr3	116615778	116615978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289568, intron 9 of 17)	ORR1E|LTR|ERVL-MaLR	-1291.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	25.44	30.43	34.23	50.27	29.86	39.51	37.2	50.41	17.9	21.09	40.7	25.37
Merged-chr10-78457986-3	chr10	78457908	78458108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6940.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	65.41	31.94	55.9	45.05	54.82	43.27	32.55	55.93	72.18	60.75	82.91	49.18
Merged-chr8-84249713-3	chr8	84249562	84249762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007571)	promoter-TSS (NM_001007571)	99.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	33.11	28.42	39.93	36.6	39.27	41.39	22.59	35.75	43.27	48.7	31.66	25.37
Merged-chr10-61199778-3	chr10	61199662	61199862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 21 of 21)	intron (NM_001081127, intron 21 of 21)	24500.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	51.69	45.28	34.23	28.56	33.14	57.38	42.52	49.32	62.94	65.27	74.87	29.45
Merged-chr19-6877039-1	chr19	6876939	6877139	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19|LTR|ERVK	-18828.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	1.21	2.52	1.14	0.0	5.73	2.51	1.66	0.9	23.21	48.2	12.56	15.04
Merged-chr1-155062201-3	chr1	155062085	155062285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21079.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	13.33	15.09	21.68	14.88	31.91	19.76	13.62	20.94	20.65	21.59	38.69	22.56
Merged-chr7-130903910-3	chr7	130903827	130904027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-4341.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	47.65	26.16	50.77	54.7	53.59	42.33	37.2	74.33	39.53	26.61	46.23	21.62
Merged-chr12-80114526-3	chr12	80114417	80114617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1504.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	18.98	16.35	16.54	16.09	20.05	28.85	18.27	14.24	41.3	48.7	39.19	20.05
Merged-chr11-67052649-3	chr11	67052549	67052749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025510)	promoter-TSS (NM_025510)	-21.0	NM_001040026	52892.0	Mm.129731	NM_001040026	ENSMUSG00000069844	Sco1	2610001C07Rik|D11Bwg1310e	SCO1 cytochrome c oxidase assembly protein	protein-coding	41.99	27.17	39.93	31.77	53.59	39.82	32.88	42.5	47.21	40.67	59.29	33.21
Merged-chrX-73787039-3	chrX	73786943	73787143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166480)	promoter-TSS (NM_001166480)	20.0	NM_009279	20832.0	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|SSR-delta|TRAP-delta|Trap	signal sequence receptor, delta	protein-coding	86.01	95.08	92.41	88.89	93.68	142.36	65.11	76.23	114.67	136.07	142.71	71.42
Merged-chr2-84799340-3	chr2	84799228	84799428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	500.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	72.28	81.24	82.15	41.83	76.91	113.51	41.52	56.69	89.49	82.35	68.34	30.7
Merged-chr16-30388853-3	chr16	30388764	30388964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-334.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	67.84	82.5	62.75	54.7	95.73	97.83	34.21	60.81	108.18	120.51	161.8	71.74
Merged-chr11-17953513-2	chr11	17953403	17953603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	372.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	34.32	43.26	26.24	48.67	34.77	26.65	55.8	40.99	36.78	31.63	43.21	24.43
Merged-chr17-35813878-1	chr17	35813778	35813978	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7835.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	8.08	5.03	7.99	4.02	17.59	16.62	23.58	15.36	16.13	13.05	14.57	8.46
Merged-chr16-39101982-1	chr16	39101882	39102082	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86968.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.42	3.02	3.42	4.02	17.18	17.25	33.88	36.08	6.29	5.02	13.06	5.01
Merged-chr7-38019518-3	chr7	38019430	38019630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011274)	promoter-TSS (NM_011274)	22.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	42.4	50.56	57.05	47.46	77.73	89.37	48.16	76.63	75.72	69.79	103.01	61.09
Merged-chr17-21909689-3	chr17	21909589	21909789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	237.0	NM_001256493	70081.0	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	47.65	34.96	47.92	49.47	45.41	37.32	29.56	29.58	60.58	57.24	73.86	54.2
Merged-chr15-50697913-3	chr15	50697808	50698008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191141.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	80.36	73.95	45.07	49.47	84.28	105.05	54.14	77.08	98.34	99.92	78.89	51.06
Merged-chr17-45506995-3	chr17	45506877	45507077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198608, exon 1 of 22)	exon (NM_198608, exon 1 of 22)	136.0	NM_198608	224805.0	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	43.21	54.08	56.48	49.87	28.23	56.76	42.19	41.89	44.45	53.73	54.27	40.41
Merged-chr9-23670821-3	chr9	23670720	23670920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-427198.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	40.78	31.94	45.64	52.69	69.14	51.74	67.76	75.53	47.6	41.67	71.35	28.82
Merged-chr9-62811861-3	chr9	62811724	62811924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-176.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	41.19	51.31	54.76	51.48	35.18	51.74	40.19	40.71	39.93	50.71	48.24	34.77
Merged-chr5-144965206-3	chr5	144965089	144965289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	641.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	38.76	44.52	32.52	28.15	44.59	45.78	47.5	41.94	58.42	58.24	73.86	33.83
Merged-chr6-31108992-3	chr6	31108903	31109103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-45910.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	38.36	37.23	33.09	29.36	27.82	49.23	38.86	42.22	49.17	46.7	52.26	51.69
Merged-chr9-21546618-3	chr9	21546524	21546724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-270.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	198.67	214.3	239.02	215.98	287.19	280.65	178.04	238.66	286.38	282.69	363.8	192.03
Merged-chrX-99136019-3	chrX	99135931	99136131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010110)	promoter-TSS (NM_010110)	-30.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	73.89	51.56	73.02	88.89	58.91	58.32	60.79	78.9	76.31	45.69	97.98	44.48
Merged-chr8-104384202-3	chr8	104384110	104384310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	11597.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	47.65	23.39	33.66	37.4	24.96	17.56	40.52	48.14	23.8	19.58	38.69	23.81
Merged-chr6-135007841-3	chr6	135007747	135007947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3765.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	48.86	33.2	44.5	65.56	60.55	54.25	72.41	100.18	31.47	30.13	42.71	26.63
Merged-chr8-56439623-3	chr8	56439528	56439728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45340.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	75.91	89.29	99.83	106.58	123.55	117.9	94.67	162.65	148.11	179.25	187.43	87.09
Merged-chr3-95635768-3	chr3	95635668	95635868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10788.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	80.36	79.99	98.12	87.28	87.14	91.88	105.3	128.22	102.08	88.37	121.6	49.5
Merged-chr11-85003681-3	chr11	85003559	85003759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	45905.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	107.81	83.76	65.6	81.24	110.87	127.94	78.72	101.61	108.38	90.88	112.05	84.9
Merged-chr3-81932652-3	chr3	81932557	81932757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	56.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	16.96	25.91	20.54	28.96	21.27	29.16	40.86	41.92	39.34	31.13	50.75	22.87
Merged-chr16-5256026-3	chr16	5255918	5256118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027446)	promoter-TSS (NM_027446)	-62.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	228.55	242.22	219.63	247.35	251.6	289.74	263.41	261.81	297.0	332.39	452.74	208.64
Merged-chr11-59541518-3	chr11	59541416	59541616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-53.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	127.2	119.98	108.96	93.71	139.91	190.34	85.04	85.37	147.71	186.78	152.25	78.0
Merged-chr2-28533314-3	chr2	28533200	28533400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145835)	promoter-TSS (NM_001145835)	-164.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	77.93	80.74	75.87	48.67	111.69	163.06	65.44	50.72	137.68	139.59	107.53	60.46
Merged-chr17-57228216-3	chr17	57228091	57228291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009778)	promoter-TSS (NM_009778)	-55.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	30.69	44.52	42.78	18.1	45.0	68.05	34.21	28.54	92.64	62.76	65.32	28.51
Merged-chr2-46366039-3	chr2	46365931	46366131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	669426.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	45.63	37.98	55.9	40.62	51.55	38.57	42.85	41.64	51.53	39.16	47.74	16.92
Merged-chr9-106429443-3	chr9	106429354	106429554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	43.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	82.37	70.68	62.18	58.32	60.96	84.35	52.82	34.79	97.56	101.43	91.95	70.48
Merged-chr2-121355376-3	chr2	121355241	121355441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2435.0	NM_001355069	12716.0	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	53.7	46.03	37.08	40.62	52.37	68.05	46.84	49.43	74.94	67.78	112.56	46.36
Merged-chr12-4817497-3	chr12	4817390	4817590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025323)	promoter-TSS (NM_025323)	-118.0	NM_025323	66055.0	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	81.16	83.0	92.41	83.26	103.5	102.85	70.09	91.6	123.91	98.91	124.11	66.41
Merged-chr1-88635794-3	chr1	88635678	88635878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66413.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	47.65	59.61	71.31	44.24	63.41	74.63	37.2	34.26	57.83	53.73	61.3	36.03
Merged-chr10-40372516-3	chr10	40372416	40372616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23208.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	23.42	14.59	37.08	24.94	43.77	40.45	42.85	42.73	25.77	22.09	35.17	30.07
Merged-chr1-183623505-3	chr1	183623412	183623612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-125465.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	19.79	11.07	23.96	33.78	22.09	12.86	23.58	51.2	37.37	21.59	35.68	33.21
Merged-chr17-45750137-1	chr17	45750037	45750237	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	15631.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.42	1.01	7.99	4.02	19.64	1.88	13.62	5.83	4.92	5.52	7.03	2.51
Merged-chr10-122739298-3	chr10	122739209	122739409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	59994.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	14.13	12.58	25.1	28.15	25.77	22.26	10.3	18.76	27.93	27.11	26.63	20.36
Merged-chr11-106957577-3	chr11	106957476	106957676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36861.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	56.53	46.78	59.33	51.48	60.55	72.12	53.48	51.17	63.53	77.83	59.29	34.15
Merged-chr7-144582476-3	chr7	144582375	144582575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010175)	promoter-TSS (NM_010175)	-39.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	66.63	69.42	65.6	53.49	58.09	64.6	36.54	53.38	84.18	80.84	124.11	47.62
Merged-chr4-117190069-3	chr4	117190014	117190214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7490.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	35.13	33.45	33.66	46.25	22.5	47.04	45.51	38.16	26.95	34.14	44.22	30.7
Merged-chr5-142440696-3	chr5	142440591	142440791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23240.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	63.4	46.78	47.35	34.19	73.23	99.72	62.12	79.71	77.89	77.83	95.47	46.05
Merged-chr15-99393403-3	chr15	99393338	99393538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171035, intron 1 of 9)	CpG	219.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	21.0	25.4	17.11	14.48	24.14	23.83	18.27	22.65	42.48	33.14	39.19	25.37
Merged-chr2-167335276-3	chr2	167335169	167335369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13909.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	100.14	57.6	124.93	112.21	92.46	98.78	108.95	128.69	71.99	51.72	94.47	75.81
Merged-chr1-156035722-1	chr1	156035622	156035822	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-5.0	NM_001160180	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	24.63	32.95	35.94	19.31	37.64	45.78	30.23	37.79	40.71	54.73	44.22	26.31
Merged-chr14-29960380-3	chr14	29960275	29960475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-8005.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	33.11	39.99	39.93	28.56	36.82	37.63	27.57	20.66	45.63	46.7	46.23	39.47
Merged-chr8-71559098-3	chr8	71559000	71559200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100462)	promoter-TSS (NM_001100462)	-229.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	98.93	60.62	67.88	67.17	96.14	85.92	71.75	69.45	121.55	108.45	124.62	51.69
Merged-chr8-34918621-3	chr8	34918508	34918708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 2 of 26)	intron (NM_175091, intron 2 of 26)	47082.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	29.07	26.16	43.93	29.76	60.14	37.63	22.59	85.88	34.62	36.65	18.59	24.43
Merged-chr13-119310193-3	chr13	119310102	119310302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98809.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	37.15	18.86	37.08	35.8	44.18	25.09	28.23	49.71	66.87	47.2	57.28	25.06
Merged-chr14-20478955-3	chr14	20478852	20479052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110794, intron 1 of 12)	intron (NM_001110794, intron 1 of 12)	1181.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	50.47	38.99	35.94	34.19	58.5	86.23	29.9	44.05	63.73	71.3	29.65	32.89
Merged-chr3-108997488-3	chr3	108997378	108997578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	30129.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	37.15	28.17	37.65	43.84	16.77	15.05	20.26	36.5	26.16	19.08	50.75	17.54
Merged-chr1-57406666-3	chr1	57406542	57406742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302963)	promoter-TSS (NM_001302963)	32.0	NM_001302962	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	26.65	19.87	15.4	26.55	26.59	32.93	32.55	29.61	30.09	31.13	38.19	15.04
Merged-chr11-100609047-3	chr11	100608942	100609142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	MTD|LTR|ERVL-MaLR	11126.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	58.15	34.71	57.62	47.46	32.32	56.13	33.88	51.17	51.93	49.71	50.75	48.24
Merged-chr10-117285146-3	chr10	117285059	117285259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2887.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	60.17	51.56	66.17	50.27	63.41	54.88	46.84	53.02	53.5	61.26	59.29	39.78
Merged-chr10-62541707-3	chr10	62541541	62541741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14196.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	30.28	25.15	18.25	24.13	45.82	40.45	36.21	33.36	38.16	43.68	42.21	21.93
Merged-chr18-20887023-1	chr18	20886923	20887123	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	9055.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	3.23	3.27	0.0	11.66	2.45	8.47	6.98	7.82	4.13	6.53	5.02	4.7
Merged-chr13-98956465-3	chr13	98956385	98956585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	28080.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	39.17	26.41	39.93	30.97	34.77	47.66	40.52	45.65	49.96	42.18	61.81	39.78
Merged-chr15-78862511-3	chr15	78862399	78862599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-6970.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	35.53	31.69	41.07	33.38	31.5	61.15	31.22	43.91	42.88	44.69	41.2	23.81
Merged-chr2-180024879-3	chr2	180024853	180025053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-34.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	108.22	110.17	138.05	118.65	147.69	138.6	126.22	156.56	185.28	188.29	252.25	102.75
Merged-chr8-123318600-3	chr8	123318493	123318693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-17.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	52.09	60.62	60.47	74.41	81.0	74.94	52.15	99.53	99.92	73.81	128.13	55.45
Merged-chr8-53639036-3	chr8	53638941	53639141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	24.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	35.13	32.95	29.66	37.81	54.0	59.89	33.22	68.47	54.09	46.19	129.64	32.89
Merged-chrX-41911949-3	chrX	41911836	41912036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033422)	promoter-TSS (NM_001033422)	-35.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	41.59	53.83	45.64	45.45	60.96	63.97	36.87	64.79	90.87	64.27	91.45	43.54
Merged-chr4-139233150-3	chr4	139233075	139233275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	39064.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	46.84	40.5	88.99	51.88	87.14	111.32	96.0	97.54	98.34	103.43	139.69	62.34
Merged-chr4-129600701-3	chr4	129600617	129600817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029748)	promoter-TSS (NM_029748)	10.0	NM_029748	76799.0	Mm.293096	NM_029748	ENSMUSG00000028797	Tmem234	1500002D11Rik|2510006D16Rik|4933407D05Rik	transmembrane protein 234	protein-coding	24.23	22.64	15.4	21.72	33.14	32.3	24.25	24.08	20.65	22.59	36.18	21.62
Merged-chr13-41605324-1	chr13	41605224	41605424	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-892.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	32.71	19.87	39.93	23.33	19.23	22.58	24.58	29.55	48.19	30.63	56.28	22.24
Merged-chr6-81965869-3	chr6	81965736	81965936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026490, exon 1 of 5)	exon (NM_026490, exon 1 of 5)	113.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	12.11	16.85	22.82	22.12	30.68	37.94	45.51	37.26	20.85	27.62	49.75	30.07
Merged-chr19-5406832-1	chr19	5406732	5406932	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	17.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.4	0.0	0.0	0.4	0.0	0.0	0.66	0.03	24.0	18.08	20.6	22.56
Merged-chr2-31062392-3	chr2	31062269	31062469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	34131.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	21.0	28.17	23.39	30.97	29.46	34.18	25.24	38.3	39.93	24.6	29.65	26.31
Merged-chr7-63911047-3	chr7	63910958	63911158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5799.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	42.4	37.48	50.77	37.81	73.23	69.93	47.17	59.97	54.68	67.78	97.48	24.12
Merged-chr19-32187007-1	chr19	32186907	32187107	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24006.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	19.79	11.82	13.12	13.27	33.96	40.76	9.97	28.12	26.36	40.17	14.57	10.96
Merged-chr7-39517922-3	chr7	39517801	39518001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004139, intron 1 of 3)	CpG	135.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	123.56	152.93	124.36	201.9	149.73	179.05	264.08	170.94	154.79	205.36	230.14	146.3
Merged-chr15-63611340-3	chr15	63611232	63611432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131724.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	35.94	37.48	39.36	34.59	18.41	31.36	25.58	40.71	34.42	29.62	30.65	26.31
Merged-chr10-24638136-3	chr10	24638026	24638226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42684.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	26.65	15.85	22.82	18.1	16.77	21.01	25.24	39.59	21.24	22.09	33.16	18.48
Merged-chr4-150237136-3	chr4	150237059	150237259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025388).2	promoter-TSS (NM_001025388).2	-38.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	79.95	81.75	104.96	80.44	112.5	146.12	56.8	107.66	141.42	164.19	176.87	121.23
Merged-chr8-46886360-3	chr8	46886261	46886461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100526.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	62.18	61.88	100.4	78.03	76.09	97.52	98.65	86.66	76.31	86.86	99.99	69.55
Merged-chr8-81342448-3	chr8	81342340	81342540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-122.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	67.43	56.85	63.32	80.04	52.37	55.19	72.41	68.8	25.57	27.62	59.8	33.83
Merged-chr7-128333110-3	chr7	128333003	128333203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34972.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	49.26	60.62	81.58	66.36	58.5	65.54	35.87	50.83	67.27	51.21	58.79	46.68
Merged-chr6-58640544-3	chr6	58640462	58640662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011920, intron 1 of 15)	CpG	43890.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	46.84	42.76	26.24	59.93	56.05	51.11	52.15	64.18	41.3	51.72	55.78	24.12
Merged-chr7-102234117-1	chr7	102234017	102234217	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	11089.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	14.94	11.32	4.56	4.42	13.09	14.11	5.98	4.49	26.55	22.59	6.53	4.07
Merged-chr5-139200568-3	chr5	139200493	139200693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-44.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	140.52	106.9	148.32	150.82	148.91	164.31	136.19	148.63	192.95	199.84	224.11	127.81
Merged-chr13-114855987-1	chr13	114855887	114856087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008396, intron 20 of 29)	intron (NM_008396, intron 20 of 29)	37750.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	52.49	30.18	36.51	55.5	1.64	0.63	1.66	2.21	1.77	0.0	1.0	2.51
Merged-chr15-98513043-3	chr15	98512935	98513135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6799.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	143.75	145.63	150.6	177.77	142.37	179.68	162.43	154.94	146.14	166.7	162.8	129.07
Merged-chr13-19395330-3	chr13	19395241	19395441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	472.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	56.53	32.45	39.93	24.13	42.14	46.72	23.25	43.4	53.7	51.21	57.79	37.91
Merged-chr5-124050237-3	chr5	124050138	124050338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17978.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	42.4	32.45	46.21	26.55	38.05	68.67	48.5	42.06	58.22	42.68	48.74	26.63
Merged-chr4-142017897-3	chr4	142017789	142017989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-9.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	94.08	78.23	106.1	122.67	93.68	100.97	93.34	151.32	116.64	83.35	174.86	100.56
Merged-chr11-87462543-3	chr11	87462445	87462645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	34954.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	45.63	66.15	50.2	68.78	23.32	49.86	36.87	15.56	40.91	33.64	45.22	21.3
Merged-chr10-130318940-3	chr10	130318829	130319029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3923.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	29.88	29.18	30.23	32.58	46.23	45.15	20.26	66.76	37.57	40.67	35.68	23.49
Merged-chr18-66438000-3	chr18	66437910	66438110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20594.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	72.68	81.5	86.71	74.41	104.73	115.39	59.79	87.03	130.21	113.48	152.75	83.33
Merged-chr1-152798298-3	chr1	152798200	152798400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1853.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	129.21	116.21	122.65	86.88	130.91	159.29	92.68	122.66	131.98	135.07	168.33	99.93
Merged-chr10-62509409-3	chr10	62509327	62509527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	-1670.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	58.55	43.26	57.62	44.64	74.46	70.24	84.7	78.36	77.1	66.28	103.51	60.15
Merged-chr13-95375344-3	chr13	95375284	95375484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025630)	promoter-TSS (NM_025630)	-27.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	81.97	47.79	78.15	45.45	78.96	59.27	40.19	73.26	72.58	82.85	85.42	53.26
Merged-chr8-61224068-3	chr8	61223962	61224162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	-109.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	18.17	22.64	20.54	22.52	21.68	29.48	50.16	46.32	23.21	19.58	28.14	21.62
Merged-chr7-28383107-3	chr7	28383043	28383243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3915.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	178.88	179.34	228.75	206.33	236.46	242.39	256.77	256.15	264.74	279.67	384.4	177.62
Merged-chr10-43479668-1	chr10	43479568	43479768	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199028, intron 1 of 3)	CpG	528.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	23.42	35.72	23.96	16.89	15.55	24.15	28.57	11.64	30.49	15.57	19.09	19.42
Merged-chrX-164978739-3	chrX	164978648	164978848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 2 of 14)	MIR3|SINE|MIR	1627.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	23.02	22.89	24.53	26.55	24.14	43.27	36.54	42.39	45.63	38.66	57.28	31.95
Merged-chr8-85502629-3	chr8	85502526	85502726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10009.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	54.51	49.8	42.21	59.12	30.27	56.44	16.61	41.27	43.47	67.78	55.27	30.39
Merged-chr6-108197317-3	chr6	108197234	108197434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11751.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	72.28	57.1	89.56	80.04	61.37	69.3	50.82	82.63	68.45	44.19	91.95	44.17
Merged-chr10-67595445-3	chr10	67595350	67595550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23491.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	50.07	26.41	45.07	32.18	64.23	47.04	44.18	42.93	39.53	44.19	53.26	42.92
Merged-chr6-21950008-3	chr6	21949917	21950117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 1 of 11)	CpG	402.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	158.29	130.79	138.62	162.89	159.55	186.26	96.33	161.75	176.43	200.84	284.91	129.69
Merged-chr1-136131217-3	chr1	136131126	136131326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	-43.0	NR_046167	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	75.91	64.89	73.02	63.55	89.18	89.37	101.31	105.53	112.51	109.96	133.66	57.95
Merged-chr13-9454899-3	chr13	9454769	9454969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178344.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	39.17	32.2	44.5	57.51	72.0	56.44	59.13	67.09	69.43	43.68	56.28	41.04
Merged-chr9-21411833-3	chr9	21411795	21411995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021888)	promoter-TSS (NM_021888)	58.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	37.96	37.48	37.65	37.4	49.91	34.49	32.88	34.85	48.39	71.8	46.73	38.53
Merged-chr5-123713980-3	chr5	123713872	123714072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027494, intron 5 of 13)	intron (NM_027494, intron 5 of 13)	7072.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	52.9	39.99	74.73	52.29	71.59	75.57	38.2	61.6	74.35	90.88	78.89	75.5
Merged-chr2-43921612-1	chr2	43921512	43921712	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	143712.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	2.83	5.28	9.13	4.83	6.55	3.45	3.99	5.02	11.6	6.53	23.11	3.45
Merged-chr9-120127673-3	chr9	120127564	120127764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-102.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	178.48	171.79	139.76	174.96	145.23	213.54	138.18	127.96	274.18	259.09	274.86	163.21
Merged-chr11-32647438-3	chr11	32647349	32647549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	4894.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	19.38	10.82	18.83	15.28	31.09	21.01	14.28	19.26	36.19	35.15	42.71	25.37
Merged-chr9-63109484-3	chr9	63109383	63109583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37497.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	30.69	24.9	49.63	51.08	40.91	41.08	29.9	39.28	35.8	28.62	34.67	26.0
Merged-chr3-51709384-3	chr3	51709300	51709500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	RMER15|LTR|ERVL	48221.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	162.33	144.38	166.57	181.79	136.64	161.8	131.54	183.03	110.15	122.01	123.11	79.26
Merged-chr8-26698744-3	chr8	26698626	26698826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125697.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	146.17	166.01	182.55	191.45	173.87	161.49	159.77	145.29	247.83	225.95	257.27	121.55
Merged-chr14-45239216-3	chr14	45239120	45239320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	19503.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	25.84	21.63	23.96	34.19	30.27	27.28	30.23	48.5	41.11	36.65	38.19	27.57
Merged-chrX-136741498-3	chrX	136741409	136741609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019768)	promoter-TSS (NM_019768)	100.0	NM_019768	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	176.86	185.12	157.45	178.17	213.96	229.22	201.63	234.09	254.91	294.74	371.84	172.92
Merged-chr14-14013218-4	chr14	14013163	14013363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139227, exon 2 of 12)	exon (NM_139227, exon 2 of 12)	772.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	25.04	27.92	17.68	32.58	22.5	21.95	44.84	25.99	27.54	14.06	30.15	25.06
Merged-chr7-31110977-1	chr7	31110877	31111077	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	20.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	40.38	39.24	32.52	21.72	46.64	64.6	55.47	39.98	57.04	66.78	57.28	33.21
Merged-chr5-90881882-3	chr5	90881789	90881989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9356.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	65.01	49.55	100.97	78.03	133.37	100.03	99.65	88.15	101.69	103.94	117.58	72.05
Merged-chr2-169928777-5	chr2	169928678	169928878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34409.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	16.96	16.85	13.12	16.89	24.55	21.01	24.58	15.11	34.62	35.15	37.69	21.3
Merged-chr5-145204426-3	chr5	145204302	145204502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-157.0	NM_001359187	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	134.06	107.15	113.52	128.3	136.23	141.11	102.64	117.42	123.52	167.2	174.36	112.78
Merged-chr1-128590976-3	chr1	128590938	128591138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356509, intron 1 of 1)	CpG	1261.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	45.63	31.44	51.34	47.06	62.59	61.15	71.75	71.24	38.94	39.16	49.75	41.66
Merged-chr7-4504875-3	chr7	4504740	4504940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360154, intron 12 of 12)	intron (NM_001360154, intron 12 of 12)	-3160.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	43.61	40.5	53.05	49.47	42.96	48.92	38.2	44.97	54.88	48.2	61.81	33.83
Merged-chr4-53126946-3	chr4	53126834	53127034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	32961.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	144.16	129.79	140.33	131.92	135.41	196.61	172.73	176.5	155.38	163.18	187.93	104.32
Merged-chr1-106627439-3	chr1	106627330	106627530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-80799.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	144.96	135.83	154.02	210.35	161.19	161.8	190.67	197.66	214.98	191.8	266.82	155.07
Merged-chr1-191224960-3	chr1	191224865	191225065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151547, intron 1 of 1)	intron (NR_151547, intron 1 of 1)	511.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	88.43	79.73	62.75	61.54	99.41	134.84	53.81	82.74	97.95	92.89	137.18	46.36
Merged-chrUn_JH584304-55469-1	chrUn_JH584304	55369	55569	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 4 of 7)	non-coding (NR_003518, exon 4 of 7)	4220.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	41.3	34.65	35.68	45.74
Merged-chr12-21208411-2	chr12	21208335	21208535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 7 of 26)	intron (NM_001004364, intron 7 of 26)	77849.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	24.63	15.59	21.11	24.53	14.32	21.95	16.61	14.27	3.74	0.5	3.01	4.07
Merged-chr15-97576880-3	chr15	97576729	97576929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128993.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	9.29	14.34	15.4	17.7	20.46	14.74	16.28	16.18	25.96	17.07	31.15	20.36
Merged-chr2-160250480-3	chr2	160250391	160250591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77003.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	27.05	21.88	22.82	22.52	18.0	21.64	25.24	41.07	29.7	26.11	51.25	24.75
Merged-chr3-89213977-3	chr3	89213873	89214073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013604, exon 1 of 8)	exon (NM_013604, exon 1 of 8)	362.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	29.48	32.95	26.24	28.96	43.77	44.21	25.24	34.54	44.84	39.67	40.2	22.87
Merged-chr17-87255860-3	chr17	87255760	87255960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139295, exon 4 of 4)	3' UTR (NM_139295, exon 4 of 4)	10087.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	95.3	84.26	131.21	135.94	130.09	136.72	173.39	192.06	78.87	43.68	122.1	51.69
Merged-chr11-71004497-3	chr11	71004366	71004566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-34.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	97.31	97.34	91.27	94.92	105.55	133.58	80.72	70.88	109.16	121.51	126.63	83.33
Merged-chr13-45903778-3	chr13	45903695	45903895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	61196.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	23.02	25.15	26.24	25.74	41.73	66.79	47.5	37.79	30.29	54.23	40.2	22.87
Merged-chr3-146592878-3	chr3	146592788	146592988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019957, intron 3 of 6)	intron (NM_019957, intron 3 of 6)	-4261.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	42.8	39.99	41.07	46.66	83.05	100.97	47.17	85.32	65.69	66.78	74.87	37.28
Merged-chr7-143600134-3	chr7	143600000	143600200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013742)	promoter-TSS (NM_013742)	-10.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	156.67	135.83	149.46	131.92	146.87	179.05	102.64	142.57	161.28	180.26	192.95	119.35
Merged-chr6-124904250-3	chr6	124904142	124904342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008479)	TTS (NM_008479)	7463.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	23.82	22.13	16.54	12.47	29.46	26.34	24.58	23.16	29.7	32.64	24.12	22.24
Merged-chr5-114667640-3	chr5	114667502	114667702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9181.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	50.47	57.35	53.62	39.82	73.23	77.14	48.5	50.83	118.01	84.35	110.55	60.15
Merged-chr15-31453670-3	chr15	31453565	31453765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	24.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	101.76	76.97	86.14	118.65	122.32	111.63	97.66	143.92	98.54	95.9	123.61	69.55
Merged-chr6-88075255-3	chr6	88075169	88075369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9204.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	92.07	98.35	110.1	127.5	104.32	132.95	71.08	112.65	109.56	108.45	146.72	89.91
Merged-chr1-75236468-3	chr1	75236378	75236578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159885)	promoter-TSS (NM_001159885)	55.0	NM_178055	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	98.12	84.01	100.97	83.66	90.41	119.16	96.99	102.25	144.17	140.09	196.47	83.64
Merged-chr7-25649934-3	chr7	25649821	25650021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	8840.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	19.38	17.61	47.35	20.51	41.73	45.47	44.51	66.08	35.4	17.07	24.12	20.36
Merged-chr2-152398911-3	chr2	152398816	152399016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-870.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	85.2	115.7	100.97	97.33	85.91	104.73	68.1	89.5	104.24	88.87	131.65	76.12
Merged-chr3-87906181-3	chr3	87906095	87906295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-126.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	136.48	148.15	144.9	125.49	181.23	292.88	168.41	189.42	163.84	158.16	205.01	98.99
Merged-chr6-71271559-3	chr6	71271450	71271650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	-121.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	203.11	215.06	243.58	258.61	186.96	267.79	207.27	238.04	281.66	252.56	273.35	177.0
Merged-chr14-57746121-3	chr14	57746014	57746214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	9.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	44.01	41.75	36.51	32.98	54.82	48.29	29.9	40.37	68.05	54.23	56.78	38.85
Merged-chr6-51558529-3	chr6	51558435	51558635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	13242.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	26.25	34.71	55.33	43.04	63.82	56.76	45.51	67.85	57.63	49.21	78.39	31.64
Merged-chr18-36700599-3	chr18	36700514	36700714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21-int|LTR|ERVL	-4689.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	43.21	34.71	39.93	39.82	70.77	68.67	70.42	74.58	59.01	58.75	67.33	35.71
Merged-chr2-93599944-3	chr2	93599851	93600051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42483.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	97.72	73.45	95.27	94.92	79.78	85.61	73.41	110.19	128.44	100.92	141.2	60.15
Merged-chr11-118454029-3	chr11	118453937	118454137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045902, intron 1 of 2)	L1MB8|LINE|L1	958.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	23.82	13.08	33.09	16.09	65.46	94.07	53.81	54.76	92.25	77.83	78.89	43.54
Merged-chr12-70825365-3	chr12	70825220	70825420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	-194.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	86.82	85.02	83.29	119.45	117.0	122.61	98.65	104.05	159.12	125.53	229.63	87.71
Merged-chr9-43306016-3	chr9	43305899	43306099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4764.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	33.52	25.66	34.23	33.78	32.73	37.0	42.52	47.16	13.77	22.59	34.67	17.54
Merged-chr5-124498377-3	chr5	124498275	124498475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	15220.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	29.07	20.37	35.37	26.95	39.68	45.15	44.51	58.04	31.08	35.65	51.25	31.01
Merged-chr19-55701052-3	chr19	55700946	55701146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1158.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	36.34	34.96	53.62	59.93	49.91	46.41	45.84	42.14	34.81	34.14	47.74	29.76
Merged-chr17-26507441-3	chr17	26507345	26507545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013642, intron 2 of 3)	intron (NM_013642, intron 2 of 3)	1027.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	151.02	138.59	108.96	109.8	130.09	152.71	97.99	99.67	175.64	194.82	188.43	113.72
Merged-chr4-35222115-3	chr4	35222012	35222212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3768.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	111.45	108.16	119.23	104.97	105.55	145.18	128.88	129.03	126.86	146.61	135.67	105.88
Merged-chr13-34255414-3	chr13	34255310	34255510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89772.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	49.67	25.66	35.37	41.43	38.86	29.16	29.9	32.94	37.37	31.13	45.73	15.66
Merged-chr4-135494608-3	chr4	135494526	135494726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-48.0	NM_028995	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	23.82	29.18	22.25	20.51	34.77	32.61	26.91	30.7	35.8	25.61	39.19	30.7
Merged-chr4-139310768-3	chr4	139310666	139310866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	22.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	32.3	35.72	70.74	31.77	33.55	46.72	18.6	37.82	33.04	41.17	28.64	28.51
Merged-chr15-101145639-3	chr15	101145546	101145746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001277259)	TTS (NM_001277259)	17124.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	78.34	51.06	73.59	73.2	58.91	69.93	48.16	72.56	75.53	45.19	117.08	42.6
Merged-chr14-54765546-1	chr14	54765446	54765646	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16340.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.42	2.77	4.56	8.04	7.36	4.39	6.64	13.74	0.0	0.5	0.0	0.31
Merged-chr3-21936089-3	chr3	21935983	21936183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140569.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	47.24	53.83	44.5	84.46	75.68	88.43	81.71	77.27	109.75	91.38	92.96	57.64
Merged-chr7-138846203-3	chr7	138846081	138846281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	86.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	81.97	77.47	76.44	58.72	103.09	74.63	67.76	74.8	85.56	105.94	95.47	45.11
Merged-chr9-21715486-3	chr9	21715424	21715624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8052.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	43.61	52.57	27.38	34.19	59.73	73.38	46.84	71.13	99.72	88.87	142.71	53.57
Merged-chr15-81810968-3	chr15	81810888	81811088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-426.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	104.99	100.11	83.29	110.6	105.96	122.61	86.36	84.79	152.43	154.65	149.74	85.84
Merged-chr6-57692045-3	chr6	57691928	57692128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025574)	promoter-TSS (NM_025574)	50.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	46.84	48.54	62.18	98.14	57.27	71.49	87.69	102.03	59.79	47.7	108.03	40.72
Merged-chr17-5730828-3	chr17	5730729	5730929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67828.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	117.5	103.38	152.88	129.91	144.82	185.32	129.88	157.12	152.04	181.76	168.33	107.76
Merged-chr4-132075401-3	chr4	132075273	132075473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128607)	promoter-TSS (NM_001128607)	-60.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	90.05	60.37	101.54	57.51	90.82	85.29	62.12	98.05	111.72	95.4	122.1	65.79
Merged-chr15-96460259-3	chr15	96460170	96460370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028148, intron 1 of 14)	CpG	573.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	27.05	28.17	16.54	26.55	34.77	31.98	38.2	36.9	37.57	22.09	44.22	20.05
Merged-chr17-65674770-3	chr17	65674655	65674855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-32551.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	42.4	27.42	23.96	35.39	41.32	43.27	37.2	49.74	52.12	46.7	69.85	35.4
Merged-chr5-139408689-3	chr5	139408600	139408800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	2313.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	139.71	98.6	166.0	156.05	120.28	95.33	120.25	144.95	127.45	116.49	165.32	92.73
Merged-chrX-12824758-3	chrX	12824663	12824863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62485.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	46.44	38.99	49.06	88.48	58.5	41.39	54.81	96.56	62.74	53.73	93.96	60.15
Merged-chr17-35879761-3	chr17	35879660	35879860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-18.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	93.68	104.89	104.39	95.32	105.96	113.2	80.39	87.84	130.6	132.56	118.08	67.35
Merged-chr13-30738647-3	chr13	30738545	30738745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10588.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	83.99	56.09	90.7	112.21	85.91	82.78	72.08	119.69	74.74	67.28	140.19	65.47
Merged-chr19-40831299-3	chr19	40831224	40831424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	45.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	33.11	35.72	19.97	36.6	40.91	35.12	43.18	29.52	23.21	35.65	38.69	18.8
Merged-chr2-35196411-3	chr2	35196316	35196516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	4704.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	64.61	35.97	51.34	54.7	49.09	48.92	28.57	53.36	54.29	44.69	49.24	41.66
Merged-chr2-142758252-3	chr2	142758132	142758332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 13 of 26)	intron (NM_001355123, intron 13 of 26)	143232.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	8.88	23.14	34.8	29.76	22.91	11.92	36.54	44.47	21.64	18.08	40.2	25.69
Merged-chr13-54789212-3	chr13	54789119	54789319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028841)	promoter-TSS (NM_028841)	-186.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	138.5	141.11	131.78	135.94	167.32	210.41	82.05	112.91	152.04	199.84	183.41	78.32
Merged-chr12-111933497-2	chr12	111933396	111933596	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10986.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	1.21	0.5	0.0	3.22	42.14	35.75	29.56	34.68	41.5	56.74	52.76	27.25
Merged-chr2-160068079-3	chr2	160067961	160068161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51408.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	31.9	26.41	46.21	35.39	79.78	48.29	44.18	56.33	17.51	46.19	31.15	19.74
Merged-chr9-45959831-3	chr9	45959730	45959930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4581.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	72.68	58.35	82.72	76.02	82.64	72.75	42.85	83.78	86.35	102.93	85.92	58.27
Merged-chr18-34779456-3	chr18	34779364	34779564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2456.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	26.65	29.18	19.4	16.49	19.23	36.37	18.27	29.66	38.94	49.71	53.26	26.94
Merged-chr1-132007524-3	chr1	132007428	132007628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007923)	promoter-TSS (NM_007923)	-77.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	52.09	66.15	53.05	49.47	61.77	55.19	42.85	47.22	68.45	63.77	64.82	49.5
Merged-chr6-120112631-3	chr6	120112534	120112734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	19254.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	136.48	136.33	156.88	167.72	160.37	153.34	141.5	166.46	128.83	133.06	146.72	84.27
Merged-chr6-72152812-3	chr6	72152684	72152884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-29587.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	32.71	19.87	60.47	35.8	53.18	35.43	86.7	109.74	32.85	27.62	64.82	28.19
Merged-chr9-45984818-3	chr9	45984745	45984945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357246)	promoter-TSS (NM_001357246)	26.0	NM_001357246	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	32.3	16.6	17.68	23.73	22.09	17.87	8.97	19.46	26.75	25.11	26.63	14.72
Merged-chr4-141512352-1	chr4	141512252	141512452	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	26245.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	0.81	0.5	0.0	0.0	0.0	0.31	0.66	0.0	55.47	51.21	63.82	39.47
Merged-chr9-111057498-3	chr9	111057412	111057612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	6.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	193.82	143.12	187.68	119.05	174.69	235.18	159.44	125.27	188.43	193.81	213.05	101.5
Merged-chr1-91052999-3	chr1	91052894	91053094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-450.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	136.89	76.21	169.43	107.39	139.1	180.3	165.42	125.44	154.01	150.63	242.7	93.67
Merged-chr1-105787179-3	chr1	105787079	105787279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	6456.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	99.33	110.17	144.33	131.92	75.68	95.64	83.04	111.06	85.17	98.41	103.01	83.64
Merged-chr7-132686657-3	chr7	132686540	132686740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75997.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	44.42	31.69	31.38	45.85	45.0	47.98	27.57	49.6	48.78	42.18	41.71	34.77
Merged-chr11-69040343-3	chr11	69040208	69040408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5329.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	27.86	24.9	18.25	23.73	37.23	30.42	25.58	26.58	26.95	29.62	27.64	20.68
Merged-chr6-37143932-4	chr6	37143817	37144017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156059.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	12.11	22.89	30.23	45.45	12.68	13.8	21.59	31.23	30.88	20.59	24.62	26.0
Merged-chr8-84984850-3	chr8	84984727	84984927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5768.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	43.61	38.99	58.76	73.2	65.87	63.03	96.99	104.58	86.54	87.87	143.71	52.94
Merged-chr14-17756987-3	chr14	17756877	17757077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	96017.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	56.94	40.24	53.62	67.57	55.64	67.1	63.11	76.4	58.22	56.74	63.31	29.13
Merged-chr1-23184881-3	chr1	23184724	23184924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82571.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	16.56	24.15	49.06	34.59	20.86	25.09	32.22	38.64	24.19	33.14	29.65	32.27
Merged-chr2-125247537-3	chr2	125247406	125247606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-9.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	50.07	60.62	41.64	55.1	51.14	58.95	66.77	55.91	55.27	45.69	62.31	44.17
Merged-chr8-57594411-3	chr8	57594301	57594501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-57352.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	46.03	45.78	45.07	69.98	58.91	52.68	48.83	86.78	107.98	70.29	111.55	72.99
Merged-chr2-117412248-3	chr2	117412149	117412349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69372.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	36.34	35.97	22.82	28.56	30.68	38.88	30.56	36.22	38.75	34.14	49.75	25.69
Merged-chr4-139166421-3	chr4	139166302	139166502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14253.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	63.8	46.53	50.77	41.83	20.46	15.68	14.95	19.18	54.29	62.76	54.77	33.21
Merged-chr2-91183981-3	chr2	91183895	91184095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-948.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	67.84	63.39	63.89	80.84	77.32	83.72	64.44	92.69	103.65	62.76	93.96	57.01
Merged-chr3-8923693-3	chr3	8923594	8923794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025434, exon 1 of 3)	exon (NM_025434, exon 1 of 3)	163.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	75.11	89.29	99.83	129.91	107.59	128.56	165.42	106.57	119.59	150.63	136.17	130.01
Merged-chr4-132816614-3	chr4	132816502	132816702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20238.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	35.94	33.2	38.22	51.88	37.64	26.03	23.92	30.17	26.55	49.21	43.72	25.69
Merged-chr18-6456441-3	chr18	6456354	6456554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	34192.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	46.03	42.26	39.93	49.47	47.87	68.67	35.21	54.7	71.79	53.22	60.8	31.01
Merged-chr6-129474713-3	chr6	129474636	129474836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1957.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	23.82	16.6	36.51	47.06	36.41	34.81	35.21	70.18	29.11	25.61	46.23	13.78
Merged-chr5-124475438-3	chr5	124475340	124475540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	2795.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	99.74	110.67	119.8	89.69	112.09	161.18	109.95	125.47	171.32	175.23	175.37	83.33
Merged-chr13-110394987-3	chr13	110394887	110395087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-57.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	146.98	130.54	154.59	163.7	173.05	183.44	111.61	177.76	196.29	178.75	232.65	125.93
Merged-chr5-92348984-3	chr5	92348874	92349074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-85.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	135.68	181.6	97.55	77.22	130.09	171.21	84.7	70.37	147.32	201.34	146.72	62.03
Merged-chr5-90742252-3	chr5	90742162	90742362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17036.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	153.85	137.08	112.38	158.06	135.41	169.96	123.57	142.49	152.04	136.07	179.39	110.9
Merged-chr7-84611755-3	chr7	84611643	84611843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5801.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	25.04	20.37	28.52	24.13	20.05	13.17	23.25	37.51	30.09	16.57	31.66	24.43
Merged-chr19-18591254-1	chr19	18591154	18591354	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 5 of 9)	MER20|DNA|hAT-Charlie	40559.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.5	0.0	1.61	4.5	5.33	7.64	10.4	0.39	1.0	1.0	0.0
Merged-chr4-11006903-3	chr4	11006791	11006991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	728.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	25.44	19.87	24.53	36.2	26.18	18.5	29.9	28.6	46.62	21.09	39.19	31.33
Merged-chr19-32292686-3	chr19	32292629	32292829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56587.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	38.76	16.6	34.23	49.87	42.55	16.93	28.23	41.19	21.44	20.59	36.68	13.47
Merged-chr13-5939522-3	chr13	5939411	5939611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78022.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	40.78	33.45	62.75	47.86	40.91	54.25	38.86	65.24	62.15	38.16	68.34	25.37
Merged-chr12-99789781-3	chr12	99789704	99789904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	93638.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	42.4	35.21	50.2	34.19	58.5	37.0	40.86	60.87	55.07	47.2	54.77	24.43
Merged-chr19-17276722-1	chr19	17276622	17276822	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62783.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.0	2.01	1.14	0.0	0.0	0.0	0.66	0.0	28.32	20.08	11.05	13.16
Merged-chr6-124805336-1	chr6	124805236	124805436	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-3325.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	10.09	10.06	7.99	6.84	14.32	16.93	16.28	18.03	29.7	14.56	25.12	16.6
Merged-chr5-30650906-3	chr5	30650793	30650993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2954.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	117.5	83.26	98.12	94.52	123.55	146.75	145.49	165.73	128.44	100.92	135.17	76.44
Merged-chr9-110781528-3	chr9	110781408	110781608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16677.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	79.55	63.13	73.59	71.59	51.14	58.32	68.43	61.15	40.32	38.66	40.7	44.48
Merged-chr1-165764248-3	chr1	165764147	165764347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011804, intron 1 of 3)	intron (NM_011804, intron 1 of 3)	489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	26.65	24.15	14.83	20.11	24.14	41.71	22.26	18.22	35.01	22.59	37.18	13.47
Merged-chr17-84981846-3	chr17	84981758	84981958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	16833.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	51.69	52.57	45.64	33.38	45.82	67.73	53.81	43.21	46.42	35.15	59.29	18.17
Merged-chr11-80383259-3	chr11	80383146	80383346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-33.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	47.24	36.72	24.53	35.39	38.46	47.98	19.6	30.53	58.81	53.73	81.9	30.07
Merged-chr16-95702493-3	chr16	95702389	95702589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	82.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	144.56	166.51	145.47	151.23	122.32	203.2	127.89	97.93	185.67	208.88	265.31	104.32
Merged-chr17-84957796-3	chr17	84957689	84957889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-79.0	NR_027930	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	371.49	348.87	369.09	437.59	404.19	454.05	358.08	389.61	530.66	544.78	693.93	341.46
Merged-chr6-24756590-3	chr6	24756495	24756695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029848, exon 3 of 5)	exon (NM_029848, exon 3 of 5)	8228.0	NM_029848	77042.0	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	58.95	75.71	78.72	89.69	154.23	153.65	183.03	186.53	134.34	116.99	174.36	68.61
Merged-chr3-65528361-3	chr3	65528264	65528464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-83.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	145.37	128.03	116.94	144.79	146.05	148.95	120.91	143.33	202.98	183.77	274.36	143.16
Merged-chr3-51276219-3	chr3	51276129	51276329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-532.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	224.11	215.56	274.96	283.55	247.1	305.42	271.05	341.58	278.9	306.28	355.76	192.97
Merged-chr4-128984774-3	chr4	128984680	128984880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8444.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	18.98	25.66	42.78	26.95	15.14	16.62	21.59	35.92	43.07	19.58	33.16	28.19
Merged-chr7-68749382-3	chr7	68749311	68749511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025549)	promoter-TSS (NM_025549)	-173.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	330.71	314.66	365.66	361.58	382.51	374.09	362.4	372.79	461.63	501.6	586.9	253.12
Merged-chr1-45825376-3	chr1	45825281	45825481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	30215.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	21.4	22.13	15.4	22.52	20.86	20.07	28.9	17.72	20.85	21.09	22.61	17.54
Merged-chr13-30660306-3	chr13	30660191	30660391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	232.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	99.33	93.07	128.35	139.56	119.87	130.76	94.0	133.07	106.8	133.56	171.35	109.02
Merged-chr9-61385981-3	chr9	61385875	61386075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	13609.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	86.82	79.73	90.13	98.14	111.28	114.77	90.02	108.67	86.54	82.85	146.72	71.11
Merged-chr2-128819170-3	chr2	128819055	128819255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	852.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	20.59	13.08	28.52	26.55	26.59	23.2	24.25	37.71	25.18	23.1	37.69	20.68
Merged-chr15-53556625-2	chr15	53556538	53556738	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57641.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	27.86	18.86	21.11	29.36	24.55	18.19	5.31	13.6	21.64	15.06	19.09	12.53
Merged-chrX-169973487-1	chrX	169973387	169973587	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 3 of 9)	intron (NM_010797, intron 3 of 9)	5430.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.81	0.5	0.0	0.0	7.36	0.63	0.33	3.7	31.47	28.12	17.08	11.59
Merged-chr9-107612877-3	chr9	107612777	107612977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3636.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	142.14	134.32	150.03	105.78	148.91	208.84	109.28	130.63	158.73	153.64	224.61	114.03
Merged-chr15-64083370-3	chr15	64083274	64083474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22926.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	68.65	57.35	67.88	56.31	66.68	73.69	58.13	78.67	73.76	75.82	108.03	59.21
Merged-chr6-31221728-3	chr6	31221627	31221827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	1376.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	34.32	18.61	30.23	24.53	22.91	38.88	14.95	29.97	28.52	24.6	23.62	20.99
Merged-chr1-152525113-3	chr1	152525011	152525211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	100106.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	40.78	46.28	60.47	39.01	47.05	71.81	44.18	46.54	56.84	60.75	57.79	35.4
Merged-chr11-100738312-3	chr11	100738209	100738409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-94.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	197.86	177.08	167.71	183.81	186.55	250.54	141.84	170.3	226.58	223.44	279.38	126.56
Merged-chr5-86085168-3	chr5	86085068	86085268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 3 of 7)	intron (NM_001310639, intron 3 of 7)	13422.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	37.96	42.01	74.16	70.38	59.32	57.07	82.71	86.16	71.99	84.35	125.12	67.04
Merged-chr1-152526438-3	chr1	152526336	152526536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98781.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	23.02	39.74	35.94	15.69	27.0	45.47	16.28	16.26	41.11	33.64	30.15	22.87
Merged-chr11-95413879-3	chr11	95413780	95413980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025287)	promoter-TSS (NM_025287)	-203.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	148.6	142.36	124.93	131.92	150.55	181.56	88.03	104.61	214.39	206.37	189.94	97.74
Merged-chr5-28037797-3	chr5	28037710	28037910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33602.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	29.48	23.9	45.64	32.98	37.64	46.41	54.81	57.48	47.99	54.73	42.71	32.27
Merged-chr14-15062963-3	chr14	15062906	15063106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	242191.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	26.25	24.9	32.52	36.6	34.77	21.32	52.15	48.48	29.7	32.64	57.28	38.85
Merged-chr4-139380549-3	chr4	139380457	139380657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-102.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	164.34	140.6	133.49	100.15	146.46	195.36	72.08	112.65	203.97	233.98	197.98	135.33
Merged-chr11-69073548-3	chr11	69073451	69073651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_028566)	TTS (NR_028566)	125.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	65.01	49.05	65.03	52.69	47.87	77.77	45.18	40.4	47.4	51.72	69.34	33.52
Merged-chr15-81730054-3	chr15	81729963	81730163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146174)	promoter-TSS (NM_001146174)	-144.0	NM_001358622	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	142.94	151.42	159.73	138.36	200.46	213.86	108.62	183.42	179.97	174.23	214.56	116.22
Merged-chr11-44529464-3	chr11	44529308	44529508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	10031.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	28.67	26.66	27.95	31.77	38.46	34.49	23.92	23.89	34.42	44.69	44.72	23.18
Merged-chr2-124609893-1	chr2	124609793	124609993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172537)	promoter-TSS (NM_172537)	-403.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	45.63	28.67	66.74	53.49	24.55	43.59	54.48	48.45	43.86	32.64	69.85	35.4
Merged-chr11-83065021-3	chr11	83064939	83065139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-73.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	100.55	117.21	86.14	27.75	106.78	164.94	47.5	42.76	115.65	139.59	99.49	40.72
Merged-chr5-121711062-3	chr5	121710960	121711160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	-549.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	26.65	20.12	22.25	18.5	25.36	23.52	16.28	22.49	27.54	19.58	24.12	21.3
Merged-chr5-30666722-3	chr5	30666637	30666837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-149.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	132.85	107.91	120.94	117.44	149.32	140.17	127.55	174.51	147.12	169.21	166.82	108.08
Merged-chr11-69759097-3	chr11	69758982	69759182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-449.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	53.3	27.67	60.47	44.24	39.68	70.55	31.89	42.76	51.73	58.75	78.39	34.77
Merged-chr5-137032866-3	chr5	137032774	137032974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2579.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	65.01	54.58	79.29	49.87	74.05	51.11	28.57	49.21	67.46	99.92	88.44	60.77
Merged-chr11-72429611-3	chr11	72429509	72429709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR55|LTR|ERVL?	-5917.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	41.19	26.16	19.4	22.52	21.68	35.75	30.56	28.68	41.11	29.62	31.66	25.37
Merged-chr2-140170635-3	chr2	140170530	140170730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	-16.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	71.07	72.94	73.02	69.18	69.96	90.0	63.44	103.77	95.0	98.41	104.52	78.32
Merged-chr1-131277012-3	chr1	131276922	131277122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019777, intron 2 of 21)	intron (NM_019777, intron 2 of 21)	2541.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	95.7	117.21	77.58	40.22	92.05	114.45	52.48	36.7	121.16	124.02	130.14	44.17
Merged-chr9-77737524-3	chr9	77737402	77737602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17033.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	57.74	49.55	100.97	71.19	78.96	83.41	63.78	104.92	27.54	30.13	45.73	22.56
Merged-chr13-117223298-3	chr13	117223206	117223406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010330, intron 1 of 8)	MIR|SINE|MIR	2733.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	31.5	30.94	51.91	54.3	39.68	33.24	28.23	33.34	42.48	46.7	61.3	22.24
Merged-chr6-58999146-3	chr6	58999042	58999242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25360.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	65.01	48.29	61.04	89.69	94.09	59.27	80.39	118.51	68.05	60.75	88.44	45.11
Merged-chr16-85148784-3	chr16	85148691	85148891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	24916.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	50.07	25.4	42.21	31.77	51.96	55.82	57.13	61.65	123.52	115.48	148.73	64.53
Merged-chr6-134539650-3	chr6	134539548	134539748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27265.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	54.92	39.99	30.8	41.43	43.36	35.43	39.53	45.73	47.99	33.64	25.12	41.98
Merged-chr2-45653176-2	chr2	45653087	45653287	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-43418.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	1.62	4.53	7.99	10.46	30.27	30.1	20.26	23.41	31.08	26.61	45.22	28.82
Merged-chr3-146450587-3	chr3	146450492	146450692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001293672, exon 1 of 7)	exon (NM_001293672, exon 1 of 7)	125.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	97.31	128.78	120.37	162.89	118.64	135.46	154.46	130.23	111.92	161.68	156.27	96.8
Merged-chr19-29325341-3	chr19	29325247	29325447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013754)	promoter-TSS (NM_013754)	-29.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	35.94	33.2	24.53	21.72	31.09	23.52	20.26	41.52	34.81	27.11	39.19	20.99
Merged-chr1-71988283-3	chr1	71988183	71988383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	16912.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	35.94	43.51	35.37	38.61	53.59	92.19	58.79	86.44	86.54	75.32	81.9	41.35
Merged-chr12-69199690-3	chr12	69199589	69199789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	-1260.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	25.04	25.91	65.03	55.5	43.77	42.33	32.55	56.89	53.3	46.19	73.36	39.47
Merged-chr12-4236503-3	chr12	4236417	4236617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001204912, exon 2 of 2)	exon (NM_001204912, exon 2 of 2)	2490.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	37.55	30.18	53.62	34.19	39.27	44.21	33.88	46.21	36.58	26.11	80.9	31.95
Merged-chr14-47735511-3	chr14	47735421	47735621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347525, intron 39 of 39)	intron (NM_001347525, intron 39 of 39)	71765.0	NM_001347522	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	23.02	23.64	46.78	34.19	24.55	23.2	26.91	35.72	18.1	15.57	21.61	21.62
Merged-chr7-84152159-3	chr7	84152039	84152239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133722)	promoter-TSS (NM_133722)	-246.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	88.84	78.48	100.97	84.86	108.0	129.82	73.41	114.03	114.28	114.98	184.91	51.69
Merged-chr11-22990522-3	chr11	22990431	22990631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009837)	promoter-TSS (NM_009837)	-62.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	178.07	141.86	148.89	162.89	153.41	213.54	120.25	163.15	176.82	187.79	257.77	127.19
Merged-chr9-124112762-3	chr9	124112674	124112874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8769.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	27.46	18.86	47.35	20.11	29.46	28.54	21.59	32.58	31.27	38.16	35.17	27.57
Merged-chr13-94711517-3	chr13	94711450	94711650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77393.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	23.82	19.62	30.8	40.22	22.91	22.89	32.88	32.52	23.01	25.61	24.12	25.69
Merged-chr1-135688121-3	chr1	135688009	135688209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31954.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	39.98	39.49	53.62	49.47	34.36	22.58	20.59	30.95	19.08	21.09	26.63	19.42
Merged-chr15-101379385-3	chr15	101379285	101379485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9260.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	39.17	32.7	47.35	59.12	38.05	50.49	36.54	47.33	35.8	24.6	36.18	32.58
Merged-chr16-94724381-3	chr16	94724236	94724436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112917.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	26.65	17.61	21.68	37.0	40.09	42.33	30.89	33.7	24.39	30.13	40.7	30.07
Merged-chr3-79286801-3	chr3	79286717	79286917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-58559.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	52.49	36.47	38.22	53.09	44.18	37.94	35.54	33.79	46.81	36.65	49.24	39.47
Merged-chr4-9118480-3	chr4	9118365	9118565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-150828.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	53.7	35.21	92.41	90.09	74.87	64.28	94.67	122.52	79.07	69.79	161.3	62.03
Merged-chr10-29361952-4	chr10	29361936	29362136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001110196, exon 1 of 3)	5' UTR (NM_001110196, exon 1 of 3)	406.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	81.16	80.49	58.76	75.61	117.0	112.89	77.73	119.08	119.59	123.02	175.37	71.74
Merged-chr11-98941983-3	chr11	98941888	98942088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	2277.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	52.9	41.25	42.21	48.67	51.55	68.99	34.21	49.54	61.96	58.75	71.86	40.1
Merged-chr5-123136977-3	chr5	123136883	123137083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4354.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	23.02	19.12	34.23	18.1	19.23	21.95	10.96	20.3	17.51	22.09	31.15	19.42
Merged-chr18-67390656-3	chr18	67390580	67390780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-51.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	102.56	107.4	75.87	93.31	92.05	138.29	70.42	99.48	89.1	95.9	147.23	79.88
Merged-chr17-53570554-3	chr17	53570458	53570658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	3587.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	78.74	58.35	101.54	97.73	96.96	109.12	81.38	114.81	109.16	104.44	158.28	84.9
Merged-chr6-65596688-3	chr6	65596597	65596797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001495, intron 3 of 7)	intron (NM_001001495, intron 3 of 7)	6299.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	33.52	27.67	32.52	26.14	19.64	33.24	29.9	20.72	38.75	39.67	29.14	20.05
Merged-chr10-8067081-3	chr10	8066982	8067182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110959.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	41.19	34.71	42.21	40.62	36.41	24.15	37.87	55.65	34.62	39.67	40.2	25.69
Merged-chr14-59598002-3	chr14	59597902	59598102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168535)	promoter-TSS (NM_001168535)	-43.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	55.72	30.43	48.49	56.31	50.73	54.88	19.93	48.31	59.2	82.85	70.85	51.06
Merged-chr5-76139308-3	chr5	76139209	76139409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020611)	promoter-TSS (NM_020611)	-964.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	53.3	57.35	47.35	39.42	27.0	53.62	20.26	23.41	54.29	42.68	72.86	24.12
Merged-chr1-60852546-3	chr1	60852451	60852651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56474.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	30.28	21.38	36.51	39.01	36.41	39.2	24.91	44.24	35.8	44.19	66.33	22.87
Merged-chr16-94519159-3	chr16	94519019	94519219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7510.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	32.71	23.14	21.11	34.99	30.27	29.79	26.91	37.71	18.88	17.57	29.14	23.18
Merged-chr12-82170064-3	chr12	82169925	82170125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	9.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	15.75	19.12	21.68	15.28	19.23	16.31	6.64	14.16	27.14	31.63	25.12	15.98
Merged-chr8-4166312-3	chr8	4166172	4166372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-295.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	294.37	363.96	397.04	450.46	386.19	442.76	395.62	464.22	524.37	551.31	622.07	298.54
Merged-chr2-80080618-3	chr2	80080534	80080734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-41732.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	95.7	82.75	87.85	114.22	113.32	133.27	99.65	139.21	179.18	157.66	174.86	105.57
Merged-chrX-140504067-3	chrX	140503922	140504122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38646.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	21.0	25.4	22.25	19.71	27.0	11.6	19.6	15.39	27.54	25.11	30.15	17.54
Merged-chr8-106415939-3	chr8	106415818	106416018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	579.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	16.15	16.85	18.25	18.9	29.05	19.13	16.94	23.5	15.93	17.07	29.65	11.59
Merged-chr13-42829139-3	chr13	42829041	42829241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-37106.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	109.43	93.07	169.43	167.32	156.28	169.02	154.79	180.17	168.76	153.64	224.61	114.34
Merged-chr4-106651015-3	chr4	106650922	106651122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285784)	promoter-TSS (NM_001285784)	-47.0	NM_001285783	230577.0	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	44.01	61.88	61.04	51.48	66.68	74.0	34.55	57.79	85.95	75.32	119.09	46.36
Merged-chr2-23156493-3	chr2	23156393	23156593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-12.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	35.94	41.75	65.6	41.02	50.32	52.68	28.23	57.39	98.15	101.43	102.0	34.15
Merged-chr19-32311229-3	chr19	32311119	32311319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	38097.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	36.34	25.91	36.51	47.06	38.86	52.37	48.5	46.49	45.83	38.16	37.18	19.74
Merged-chr2-167254410-3	chr2	167254279	167254479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13842.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	27.05	15.34	38.79	28.96	20.86	13.8	25.58	64.71	34.81	24.6	32.66	26.0
Merged-chr9-113708057-5	chr9	113707952	113708152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164677, exon 1 of 18)	exon (NM_001164677, exon 1 of 18)	207.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	28.27	21.13	18.25	19.71	18.41	20.07	16.94	16.09	24.98	35.65	26.13	22.87
Merged-chr6-29217865-3	chr6	29217770	29217970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1506.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	34.32	26.91	45.07	45.05	34.77	28.22	37.87	34.29	32.06	26.11	36.68	25.69
Merged-chr10-67549254-5	chr10	67549162	67549362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-307.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	20.19	15.34	19.4	24.53	21.68	27.91	19.27	23.5	33.63	38.16	36.18	25.69
Merged-chr11-117799408-3	chr11	117799314	117799514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029964, intron 2 of 5)	intron (NM_029964, intron 2 of 5)	1754.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	50.47	54.08	49.63	28.96	62.18	83.41	39.2	27.06	65.3	84.86	61.3	43.23
Merged-chr11-118148118-2	chr11	118148016	118148216	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-18897.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.85	7.55	3.42	1.61	48.68	33.87	25.58	24.03	35.6	27.62	34.67	18.48
Merged-chr7-28053633-1	chr7	28053533	28053733	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3541.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	3.63	2.01	0.57	3.62	5.32	0.63	11.29	9.53	5.7	6.53	6.53	3.13
Merged-chr10-80590408-3	chr10	80590304	80590504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-63.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	164.75	159.47	159.16	132.32	190.23	229.54	88.36	125.52	225.8	213.9	243.7	108.7
Merged-chr14-31495089-3	chr14	31494961	31495161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359850)	promoter-TSS (NM_001359850)	-18.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	43.21	34.96	43.35	38.21	50.73	57.7	32.22	56.64	69.82	57.74	74.87	46.05
Merged-chr4-9657510-3	chr4	9657420	9657620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11642.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	120.33	114.95	150.03	141.98	128.46	153.65	102.97	113.47	201.02	184.77	204.51	124.37
Merged-chr11-3159818-2	chr11	3159712	3159912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	47.65	41.0	31.95	57.11	70.37	45.15	73.74	72.84	0.0	0.0	0.0	0.0
Merged-chrX-9467233-3	chrX	9467149	9467349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 1 of 12)	intron (NM_007807, intron 1 of 12)	2075.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	32.71	41.5	29.66	22.52	44.18	68.99	53.15	32.22	58.42	67.78	64.32	22.24
Merged-chr11-29787013-3	chr11	29786838	29787038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38730.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	16.15	22.89	22.25	46.66	29.05	25.71	29.9	29.27	41.5	43.18	41.2	18.17
Merged-chr10-105575464-3	chr10	105575374	105575574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	923.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	28.27	22.39	23.39	28.96	40.91	44.53	34.55	61.79	44.65	32.64	80.9	33.21
Merged-chr11-75679924-3	chr11	75679827	75680027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277221, intron 1 of 1)	intron (NM_001277221, intron 1 of 1)	668.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	21.8	23.14	19.4	19.71	22.91	36.37	27.57	29.8	38.35	34.14	46.23	36.34
Merged-chr1-191183432-3	chr1	191183270	191183470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007498)	promoter-TSS (NM_007498)	-37.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	226.93	194.18	244.16	180.99	205.37	265.28	136.52	177.11	226.19	234.48	232.65	150.68
Merged-chr9-102626273-3	chr9	102626235	102626435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	39.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	57.74	68.42	52.48	43.04	56.87	77.77	77.4	42.73	96.97	75.82	121.1	81.45
Merged-chr18-66410644-3	chr18	66410553	66410753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47951.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	30.28	14.09	18.25	29.36	29.46	30.42	19.93	39.14	31.08	46.7	37.18	35.71
Merged-chr8-126848303-3	chr8	126848193	126848393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-727.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	79.95	74.2	82.72	32.98	86.73	115.08	58.79	61.43	82.41	112.47	63.82	33.21
Merged-chr8-66494603-3	chr8	66494507	66494707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8077.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	40.78	55.34	31.95	28.96	36.41	86.55	55.8	25.68	110.15	106.45	89.44	44.17
Merged-chr14-19417854-3	chr14	19417765	19417965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	184722.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	104.99	68.42	87.85	74.0	119.05	66.16	155.79	252.73	122.73	190.8	122.1	209.58
Merged-chr4-155734544-3	chr4	155734439	155734639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101506)	promoter-TSS (NM_001101506)	-265.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	127.2	80.49	82.72	102.96	125.19	110.69	102.64	120.08	161.48	103.43	164.31	85.84
Merged-chr11-55116125-3	chr11	55116025	55116225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18140.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	21.8	20.37	31.38	15.69	18.41	23.52	24.25	21.08	39.14	33.64	42.21	25.06
Merged-chr15-68363412-3	chr15	68363319	68363519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22130.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	226.13	239.2	171.14	199.09	198.01	244.9	156.78	177.73	303.69	280.68	348.72	185.45
Merged-chr8-106011431-3	chr8	106011330	106011530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025518)	promoter-TSS (NM_025518)	-48.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	28.67	23.14	27.38	38.21	33.55	29.16	19.93	30.84	38.55	48.7	42.21	29.76
Merged-chr6-145121763-3	chr6	145121653	145121853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	14.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	123.97	97.09	107.25	121.46	119.87	120.73	119.58	110.36	128.83	118.5	167.33	68.29
Merged-chr7-35140038-3	chr7	35139937	35140137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20744.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	23.02	25.91	55.9	59.53	25.77	29.79	35.21	58.26	44.25	36.15	45.73	39.78
Merged-chr11-98202967-5	chr11	98202862	98203062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109626)	promoter-TSS (NM_001109626)	-343.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	19.38	30.69	32.52	37.4	29.46	31.67	28.57	27.25	30.68	45.69	33.67	33.83
Merged-chr10-34282155-3	chr10	34282066	34282266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-24.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	180.5	133.81	147.75	170.93	161.6	198.81	147.48	163.18	209.08	188.29	209.03	113.09
Merged-chr5-146231088-3	chr5	146230953	146231153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359990)	promoter-TSS (NM_001359990)	-197.0	NM_001359990	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	88.03	75.21	78.15	70.79	67.91	81.84	68.1	85.46	70.22	79.83	105.02	49.5
Merged-chr13-115958556-3	chr13	115958452	115958652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	351136.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	21.4	15.09	19.4	33.78	49.09	49.86	55.47	88.88	48.58	32.13	46.73	25.69
Merged-chr1-123934537-3	chr1	123934436	123934636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111023.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	83.59	76.46	87.28	132.32	109.23	122.29	108.62	164.61	137.68	149.63	149.24	70.48
Merged-chr16-36941360-3	chr16	36941254	36941454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	6371.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	64.2	51.56	74.73	61.54	58.09	61.15	40.86	52.82	80.84	83.35	80.9	37.91
Merged-chr18-4368428-3	chr18	4368340	4368540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-7152.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	18.98	17.61	24.53	3.62	27.0	35.43	11.96	14.69	36.98	26.61	27.13	17.86
Merged-chr19-12013420-3	chr19	12013324	12013524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23316.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	96.1	80.74	73.59	67.57	92.05	110.06	75.07	85.71	108.57	88.37	122.1	46.68
Merged-chr16-55974596-3	chr16	55974498	55974698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	19.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	104.58	119.73	152.88	89.69	143.19	154.59	112.27	143.64	197.67	147.12	270.34	113.09
Merged-chr6-57770634-3	chr6	57770530	57770730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	54495.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	31.09	22.89	30.8	33.78	47.05	28.54	33.22	51.39	36.98	20.59	40.2	15.35
Merged-chr13-69809861-3	chr13	69809751	69809951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138596)	promoter-TSS (NM_138596)	-31.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	62.59	55.08	66.74	47.86	70.37	81.22	49.83	71.86	79.27	76.82	106.53	41.35
Merged-chr8-27260254-3	chr8	27260127	27260327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-100.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	84.39	47.29	78.15	94.92	83.87	92.82	61.45	100.96	80.84	76.32	121.6	56.07
Merged-chr3-137980877-3	chr3	137980779	137980979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	670.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	25.84	33.2	29.09	22.93	51.96	60.83	30.56	48.84	42.88	56.24	55.27	25.37
Merged-chr12-101958289-3	chr12	101958189	101958389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-46.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	142.54	129.29	154.02	136.75	164.46	166.19	120.91	123.03	191.18	217.91	184.41	119.04
Merged-chr8-90877087-3	chr8	90876975	90877175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48240.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	74.7	64.39	85.0	37.81	64.23	57.7	50.82	38.22	45.83	41.17	34.17	26.31
Merged-chr5-24425242-3	chr5	24425143	24425343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	11.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	59.76	61.88	55.9	43.84	63.0	69.3	28.9	52.23	98.34	114.98	107.53	57.33
Merged-chr10-127313026-3	chr10	127312926	127313126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	37.15	26.66	29.66	33.78	36.41	29.16	28.9	40.09	53.7	30.13	34.17	31.95
Merged-chr15-31350139-4	chr15	31350027	31350227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	17632.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	13.33	20.37	15.4	32.58	80.59	53.93	104.97	153.51	58.61	61.26	71.35	45.42
Merged-chr18-36342079-3	chr18	36341999	36342199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6525.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	22.21	18.11	27.95	27.35	36.82	28.22	25.91	37.71	28.13	27.11	50.25	17.86
Merged-chr17-50192579-3	chr17	50192471	50192671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2074.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	31.9	16.1	13.12	16.89	40.5	63.97	25.24	50.13	31.27	31.13	45.73	17.23
Merged-chr3-54719143-3	chr3	54719041	54719241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358017, intron 20 of 24)	intron (NM_001358017, intron 20 of 24)	16223.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	28.27	19.87	21.68	33.78	43.36	39.82	33.22	65.64	52.12	39.16	74.37	31.33
Merged-chr3-86999214-3	chr3	86999109	86999309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007639, exon 1 of 6)	exon (NM_007639, exon 1 of 6)	131.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	12.92	21.88	15.4	24.94	18.0	24.77	17.27	17.16	18.29	19.58	16.08	15.98
Merged-chr17-59189757-2	chr17	59189660	59189860	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176438.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	6.06	4.02	8.56	2.41	26.18	42.33	24.91	29.69	17.7	27.62	31.66	7.83
Merged-chr19-9978599-3	chr19	9978499	9978699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2001.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	57.34	45.53	68.45	43.44	51.14	65.85	47.83	54.11	61.76	75.32	64.32	34.46
Merged-chr12-30606923-3	chr12	30606807	30607007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22464.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	65.41	45.53	61.04	75.61	94.09	114.77	76.07	112.32	95.98	87.87	80.9	51.69
Merged-chr5-33820381-4	chr5	33820248	33820448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-22764.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	34.32	30.18	43.93	30.57	46.64	38.57	24.91	37.07	44.06	44.19	60.3	19.11
Merged-chr7-30332106-3	chr7	30331969	30332169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9694.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	14.54	21.13	21.68	16.09	21.68	24.77	18.27	17.1	17.31	19.08	33.67	14.1
Merged-chr5-143490166-3	chr5	143490078	143490278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 9 of 14)	intron (NM_144915, intron 9 of 14)	25685.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	17.77	19.62	33.66	34.99	36.41	21.95	24.58	46.32	31.86	25.61	30.65	30.07
Merged-chr12-26456560-3	chr12	26456481	26456681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-129.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	82.78	100.36	106.68	88.89	103.09	132.01	64.11	106.32	118.6	104.44	107.03	67.35
Merged-chr18-53862487-1	chr18	53862387	53862587	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	374.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	15.34	14.09	8.56	13.27	15.55	13.8	9.97	15.93	16.33	20.59	21.61	9.08
Merged-chr6-134247498-3	chr6	134247401	134247601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-148828.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	25.04	20.88	57.62	26.14	41.32	44.84	31.89	27.84	48.78	48.7	77.38	41.66
Merged-chr16-5233557-3	chr16	5233478	5233678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145362)	promoter-TSS (NM_145362)	-43.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	88.43	81.75	92.98	104.97	92.05	93.44	75.07	74.58	114.28	133.06	119.59	87.09
Merged-chrX-42152180-3	chrX	42152056	42152256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	intron (NM_021465, intron 1 of 32)	1455.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	45.23	46.53	58.76	75.21	60.55	64.6	71.08	80.58	81.43	62.26	93.96	52.63
Merged-chr16-35770350-3	chr16	35770229	35770429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-57.0	NR_152314	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	47.65	49.55	44.5	41.02	45.41	39.2	20.59	45.87	83.99	65.78	72.36	50.12
Merged-chr13-34188541-5	chr13	34188452	34188652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	25588.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	12.11	15.34	18.25	18.9	14.32	18.19	20.26	23.78	19.08	16.57	15.07	15.35
Merged-chr10-72654825-3	chr10	72654729	72654929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293684)	promoter-TSS (NM_001293684)	-17.0	NM_025635	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	141.73	158.46	171.14	171.74	189.01	208.53	134.86	214.37	222.06	216.41	293.45	140.34
Merged-chr18-9806706-1	chr18	9806606	9806806	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	URR1B|DNA|hAT-Charlie	99058.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.27	7.04	27.38	6.84	34.77	36.37	27.57	37.63	1.97	2.51	8.04	4.39
Merged-chr1-171786277-1	chr1	171786177	171786377	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360898, intron 3 of 4)	intron (NM_001360898, intron 3 of 4)	19145.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	1.62	0.5	1.14	0.4	3.27	3.76	3.32	3.64	1.97	3.01	3.01	2.19
Merged-chr5-102061390-3	chr5	102061285	102061485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	8536.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	39.57	25.15	62.75	43.44	17.59	33.24	34.55	34.82	39.73	39.16	42.71	25.06
Merged-chr11-82781342-4	chr11	82781230	82781430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126067)	promoter-TSS (NR_126067)	221.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	25.04	45.78	17.68	43.84	26.59	46.41	39.2	27.67	41.89	46.7	41.2	33.52
Merged-chr6-134310431-2	chr6	134310324	134310524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 8 of 8)	L1_Mus2|LINE|L1	-85905.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	21.8	11.57	18.25	15.28	24.96	28.85	32.88	11.66	8.26	7.03	7.54	4.39
Merged-chr18-54971470-3	chr18	54971362	54971562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	Lx5c|LINE|L1	18718.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	82.78	61.12	77.01	80.44	124.78	111.63	47.83	100.4	90.48	110.46	110.55	74.87
Merged-chr6-34317567-3	chr6	34317481	34317681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009658)	promoter-TSS (NM_009658)	-92.0	NM_009658	11677.0	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	102.16	110.92	119.8	112.21	139.1	148.01	89.69	146.13	152.04	124.52	190.44	91.47
Merged-chr5-63938827-3	chr5	63938703	63938903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	30094.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	16.96	21.13	29.09	35.39	41.32	33.24	32.22	58.6	35.6	26.61	49.75	23.49
Merged-chr10-61423026-3	chr10	61422946	61423146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5074.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	24.63	28.93	47.92	32.18	40.91	42.65	35.21	43.12	49.37	28.62	39.7	28.51
Merged-chr8-11478586-3	chr8	11478477	11478677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-78.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	124.77	149.41	148.32	122.27	128.87	200.37	142.17	114.22	180.95	218.92	264.81	109.33
Merged-chr2-158794725-3	chr2	158794618	158794818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291144)	promoter-TSS (NM_001291144)	-89.0	NM_145742	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	147.39	127.78	133.49	135.14	127.23	131.7	110.61	128.08	141.22	162.68	172.35	92.73
Merged-chr7-81348448-3	chr7	81348342	81348542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357107, intron 9 of 9)	intron (NM_001357107, intron 9 of 9)	-3208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	32.71	49.3	71.31	70.79	45.0	61.15	42.85	59.92	38.16	41.67	45.22	21.93
Merged-chr10-19087247-3	chr10	19087152	19087352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54497.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	47.24	45.53	34.23	16.89	47.05	60.83	45.51	30.56	45.43	39.16	54.77	18.48
Merged-chr1-156533694-3	chr1	156533595	156533795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25092.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	33.11	24.4	38.22	51.88	31.91	20.7	23.92	36.95	52.32	49.71	50.75	25.06
Merged-chr5-122502326-4	chr5	122502270	122502470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-145.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	31.09	19.87	18.25	11.26	31.91	39.2	12.29	21.11	42.09	45.19	59.29	20.68
Merged-chr4-132009959-3	chr4	132009877	132010077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	39101.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	25.44	17.61	32.52	26.14	47.46	28.22	30.89	45.31	46.62	33.64	54.27	28.82
Merged-chr15-50650013-3	chr15	50649906	50650106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	239043.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	21.0	15.59	23.96	28.96	30.27	36.69	36.87	34.23	53.89	33.14	44.72	25.06
Merged-chrX-168672604-3	chrX	168672510	168672710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010832, intron 1 of 11)	intron (NM_010832, intron 1 of 11)	1292.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	54.51	60.62	51.34	67.57	81.0	77.45	50.16	84.22	70.81	67.78	138.18	52.0
Merged-chr3-59248139-3	chr3	59248055	59248255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 24 of 43)	intron (NM_177855, intron 24 of 43)	14830.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	15.34	28.17	35.37	48.67	76.5	77.45	61.12	59.27	50.35	54.73	45.22	35.71
Merged-chr3-41412883-3	chr3	41412779	41412979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80320.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	28.67	30.18	31.95	49.47	39.27	29.16	32.88	62.38	36.78	25.11	66.33	37.91
Merged-chr11-5520918-3	chr11	5520826	5521026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001271730, exon 1 of 6)	5' UTR (NM_001271730, exon 1 of 6)	285.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	122.35	76.97	80.43	92.1	113.73	111.95	74.41	86.97	136.5	130.05	158.78	87.09
Merged-chr19-41382853-3	chr19	41382747	41382947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	2223.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	41.19	58.86	65.03	26.95	50.73	137.97	69.76	45.73	98.54	83.35	83.41	27.25
Merged-chr11-74827155-3	chr11	74827050	74827250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3774.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	21.8	18.61	22.25	19.31	52.77	39.82	50.16	45.73	24.59	24.6	34.17	28.51
Merged-chr1-193894275-3	chr1	193894179	193894379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	328480.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	60.57	57.1	63.89	89.69	88.78	69.3	61.45	92.72	86.35	74.81	85.42	52.63
Merged-chr17-50170093-3	chr17	50169999	50170199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	20398.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	31.5	37.23	41.07	15.28	29.05	44.53	16.61	32.05	52.12	51.21	56.78	27.88
Merged-chr7-92874363-3	chr7	92874194	92874394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-47.0	NM_001080995	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	69.45	84.26	100.97	88.08	99.41	96.89	82.71	82.4	100.7	99.42	156.27	69.23
Merged-chr11-73326657-3	chr11	73326569	73326769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2032.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	136.89	124.25	152.31	141.17	159.96	168.08	156.12	157.71	174.46	157.66	171.35	121.23
Merged-chr8-108848668-1	chr8	108848568	108848768	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-88192.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	1.62	1.01	1.14	0.8	0.0	1.25	0.33	0.48	55.66	47.7	66.83	25.37
Merged-chr11-38123972-3	chr11	38123870	38124070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	396075.0	NR_040295	100502917.0	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	33.11	22.64	22.25	36.2	35.18	33.55	27.9	49.4	60.97	29.62	57.28	36.34
Merged-chr4-140566966-3	chr4	140566872	140567072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112723, intron 16 of 26)	intron (NM_001112723, intron 16 of 26)	81784.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	51.28	49.8	60.47	42.23	24.55	34.18	18.93	30.73	37.76	28.12	42.21	20.05
Merged-chr8-105413579-3	chr8	105413469	105413669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177791)	promoter-TSS (NM_177791)	-53.0	NM_001170788	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	51.69	45.53	41.64	25.34	68.32	52.05	27.9	48.67	67.07	55.73	45.73	32.89
Merged-chr3-116424035-3	chr3	116423965	116424165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080818)	promoter-TSS (NM_001080818)	-33.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	33.11	38.74	29.66	41.02	44.18	45.47	30.89	40.74	51.73	45.19	57.28	30.39
Merged-chr18-84851284-3	chr18	84851176	84851376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025797)	promoter-TSS (NM_025797)	-62.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	240.66	231.91	236.17	232.87	275.33	297.27	226.87	336.73	302.9	299.25	432.14	182.01
Merged-chr11-54522823-3	chr11	54522730	54522930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-15.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	143.35	148.65	147.18	140.77	119.87	212.29	107.96	109.43	157.15	226.95	170.34	113.09
Merged-chr5-62854749-3	chr5	62854653	62854853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	40930.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	19.38	14.59	27.95	21.32	22.5	30.73	32.22	27.62	22.23	25.11	23.11	7.83
Merged-chr7-139224925-3	chr7	139224820	139225020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-11613.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	22.21	10.82	33.66	28.96	28.64	34.81	16.94	32.38	80.45	60.25	50.25	41.98
Merged-chr4-120952281-3	chr4	120952150	120952350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-549.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	20.59	12.83	15.4	22.12	26.18	24.77	10.63	22.6	23.21	24.6	23.62	17.23
Merged-chr3-135517050-1	chr3	135516950	135517150	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027288, intron 4 of 16)	MLT1F2|LTR|ERVL-MaLR	31439.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.5	0.0	0.0	31.5	32.93	23.92	28.46	1.97	0.0	2.01	2.82
Merged-chr7-116459293-3	chr7	116459166	116459366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15808.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	60.57	69.67	50.77	40.62	56.05	75.26	33.22	58.04	80.45	83.35	88.94	52.0
Merged-chr7-140954355-3	chr7	140954259	140954459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030694)	TTS (NM_030694)	1602.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	58.95	35.97	59.9	35.8	63.41	73.69	51.49	62.36	68.25	70.8	96.48	41.35
Merged-chr8-57541161-3	chr8	57541066	57541266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29323.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	53.3	48.8	65.6	48.26	62.59	67.73	42.52	60.28	69.63	62.76	73.86	33.52
Merged-chr10-8505836-3	chr10	8505714	8505914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13011.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	29.07	24.15	25.67	32.58	25.36	26.65	14.62	24.81	24.78	28.12	31.15	15.66
Merged-chr11-101425039-3	chr11	101424936	101425136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-49.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	97.72	64.89	94.7	81.65	87.14	91.25	58.79	64.99	117.42	85.86	110.55	65.16
Merged-chr8-71469104-3	chr8	71469027	71469227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294259)	promoter-TSS (NM_001294259)	-67.0	NM_001294259	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	174.04	172.3	151.17	174.96	179.6	269.05	153.46	193.46	217.34	225.95	254.26	131.57
Merged-chr6-115650032-3	chr6	115649939	115650139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	25849.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	19.79	25.66	23.96	24.13	25.36	25.71	19.27	29.1	23.6	18.58	21.1	13.16
Merged-chr10-62507888-3	chr10	62507787	62507987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-130.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	107.41	102.62	111.24	72.8	102.28	129.19	83.04	97.91	155.58	154.15	135.67	75.5
Merged-chr4-124851264-3	chr4	124851176	124851376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	517.0	NM_153566	230734.0	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	57.34	42.01	43.35	37.4	53.59	48.29	26.57	43.82	53.11	45.69	44.72	29.76
Merged-chr10-40097657-3	chr10	40097538	40097738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	MTC-int|LTR|ERVL-MaLR	44616.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	29.88	23.39	30.8	26.14	76.09	46.41	33.88	67.37	39.73	35.65	65.32	26.31
Merged-chr7-141123157-3	chr7	141123056	141123256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5350.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	100.55	81.75	98.69	90.09	153.41	137.03	100.65	127.4	141.42	108.45	157.78	54.51
Merged-chr4-53469229-3	chr4	53469135	53469335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 1 of 15)	L1MB8|LINE|L1	28822.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	16.15	21.63	19.4	32.18	31.09	39.51	27.24	32.86	29.5	30.63	48.24	25.37
Merged-chr5-101949448-3	chr5	101949340	101949540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	120481.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	42.4	42.26	37.08	42.23	24.14	28.22	20.93	50.8	60.38	22.09	72.36	45.11
Merged-chr12-80643842-3	chr12	80643739	80643939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026244)	promoter-TSS (NM_026244)	272.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	37.55	34.71	46.21	20.51	48.68	38.26	21.26	38.5	61.37	43.68	59.8	32.27
Merged-chr13-54687767-3	chr13	54687662	54687862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	46.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	93.68	93.57	116.37	86.07	128.87	145.5	63.44	94.82	154.99	157.66	162.8	93.67
Merged-chr10-22282999-2	chr10	22282899	22283099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177775, intron 1 of 5)	intron (NM_001177775, intron 1 of 5)	9525.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	50.07	39.49	53.05	56.31	61.37	45.47	42.85	63.53	3.54	2.01	5.02	0.94
Merged-chr12-40037486-3	chr12	40037399	40037599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-123.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	142.94	136.33	126.64	136.35	218.05	207.59	145.16	240.87	228.55	235.99	380.38	148.8
Merged-chr8-36094924-3	chr8	36094817	36095017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	89.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	30.28	53.83	43.35	64.35	42.55	48.6	84.04	47.07	37.37	50.21	46.73	41.66
Merged-chr2-153161302-3	chr2	153161204	153161404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	3.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	53.7	24.4	26.24	31.77	46.23	74.94	14.62	33.45	63.53	72.3	55.27	35.09
Merged-chr15-76723859-3	chr15	76723762	76723962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-17.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	55.72	56.34	77.01	57.11	81.0	88.74	39.86	61.93	76.12	79.33	88.44	35.71
Merged-chr5-107900635-3	chr5	107900548	107900748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016980, intron 1 of 7)	CpG	120.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	69.45	76.46	63.89	53.49	58.91	72.75	67.43	30.42	57.83	65.27	65.32	53.26
Merged-chr3-133092485-3	chr3	133092378	133092578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026231)	promoter-TSS (NM_026231)	-439.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	33.52	35.47	35.37	21.72	53.18	61.46	28.23	42.17	46.03	48.7	52.76	18.8
Merged-chr8-25518748-3	chr8	25518640	25518840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010206)	promoter-TSS (NM_010206)	-19.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	28.67	12.07	26.24	26.14	18.41	26.03	19.93	39.7	27.14	25.61	64.82	26.94
Merged-chr8-11008994-3	chr8	11008877	11009077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-547.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	187.76	186.13	219.06	214.77	232.37	253.05	181.03	234.11	278.51	289.21	349.23	192.03
Merged-chr9-104263068-3	chr9	104262975	104263175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-145.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	236.22	251.78	196.81	185.01	228.28	315.45	170.07	172.26	371.54	391.14	386.41	195.48
Merged-chr3-69679957-3	chr3	69679871	69680071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42084.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	35.13	24.15	36.51	21.32	44.59	44.84	18.27	21.2	38.55	38.16	32.66	20.05
Merged-chr4-133494615-3	chr4	133494528	133494728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	3922.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	37.55	25.4	7.42	22.52	25.36	39.82	12.62	13.63	36.19	42.18	32.66	14.72
Merged-chr7-64356773-3	chr7	64356677	64356877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	17318.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	68.65	32.7	83.29	97.33	70.77	48.29	122.57	151.82	65.69	58.75	111.05	57.01
Merged-chr10-117215951-3	chr10	117215857	117216057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8550.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	27.05	22.39	34.8	24.94	33.96	35.75	33.22	30.42	31.86	19.58	58.29	25.37
Merged-chr19-43523633-3	chr19	43523515	43523715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	990.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	56.53	50.81	69.6	64.75	63.41	58.32	80.39	110.1	111.13	67.28	144.21	69.55
Merged-chr13-112799984-3	chr13	112799908	112800108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-769.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	61.38	44.52	42.21	36.2	42.14	70.55	24.25	59.33	96.97	83.35	60.8	41.98
Merged-chr12-85338994-1	chr12	85338894	85339094	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145138, intron 1 of 21)	CpG	368.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	23.02	16.6	14.26	12.47	17.18	31.98	32.22	15.22	21.44	27.11	15.58	13.78
Merged-chr13-35783172-3	chr13	35783084	35783284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	41782.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	36.75	18.11	28.52	35.39	29.86	16.62	27.24	24.2	25.57	24.6	26.63	18.8
Merged-chr4-34643357-3	chr4	34643256	34643456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28399.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	72.28	49.8	115.23	123.48	134.6	125.43	114.27	184.85	164.43	126.03	183.41	100.87
Merged-chr17-34287911-3	chr17	34287817	34288017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-146.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	107.41	156.7	162.58	105.38	75.68	93.76	45.18	48.45	172.89	148.12	145.22	91.16
Merged-chr9-123475792-3	chr9	123475663	123475863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-2938.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	18.57	14.09	33.09	37.4	38.05	22.58	32.88	30.53	29.5	37.16	45.73	31.64
Merged-chr16-17233569-3	chr16	17233455	17233655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-32.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	102.56	51.06	71.88	53.89	99.41	82.78	54.81	74.92	107.59	128.04	134.16	63.28
Merged-chr1-75141690-3	chr1	75141566	75141766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356264)	promoter-TSS (NM_001356264)	25.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	27.05	32.45	23.96	32.98	31.09	34.49	29.56	37.15	36.78	36.15	48.24	21.3
Merged-chr1-157458519-3	chr1	157458407	157458607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356419)	promoter-TSS (NM_001356419)	-61.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	24.23	19.12	31.95	22.93	27.0	32.93	14.95	26.13	36.78	27.11	87.93	36.65
Merged-chr18-37956348-3	chr18	37956218	37956418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153793, intron 1 of 7)	intron (NM_153793, intron 1 of 7)	759.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	49.67	40.24	33.66	34.19	46.23	33.24	24.91	46.71	61.17	45.69	76.88	35.09
Merged-chr4-42880580-3	chr4	42880476	42880676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-6342.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	37.15	47.29	25.67	46.25	40.5	75.26	33.88	28.88	33.04	42.68	31.15	15.98
Merged-chr11-75164954-3	chr11	75164852	75165052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001002764)	TTS (NM_001002764)	3200.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	27.05	21.88	35.37	31.77	24.14	31.36	25.91	23.36	29.11	26.11	19.09	20.36
Merged-chr1-136141684-3	chr1	136141572	136141772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	10282.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	125.18	156.7	181.98	183.4	156.28	208.53	201.63	233.13	226.98	189.29	323.1	165.09
Merged-chr2-126515204-3	chr2	126515125	126515325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-15378.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	29.88	11.57	20.54	35.39	19.64	23.52	24.91	27.73	32.85	15.57	29.14	19.11
Merged-chr16-35769501-3	chr16	35769398	35769598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-142.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	154.25	143.37	122.08	121.87	126.82	197.55	115.6	127.49	164.23	149.63	145.22	62.03
Merged-chr1-66863337-3	chr1	66863239	66863439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-30.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	46.03	50.05	58.19	41.83	74.05	84.98	83.37	122.5	97.56	76.82	143.71	52.94
Merged-chr14-73143391-3	chr14	73143266	73143466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033185, intron 1 of 15)	CpG	581.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	125.58	118.47	131.21	64.75	151.78	237.69	131.21	122.3	206.13	251.55	259.28	87.71
Merged-chr11-97531913-3	chr11	97531804	97532004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018873, exon 12 of 20)	exon (NM_018873, exon 12 of 20)	-31564.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	30.69	21.63	21.11	16.89	18.0	35.75	12.95	18.7	22.42	29.62	36.18	18.17
Merged-chr11-29130724-3	chr11	29130620	29130820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027869)	promoter-TSS (NM_027869)	-31.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	74.3	49.3	72.45	58.32	81.41	64.28	61.78	87.67	81.23	53.22	141.2	48.24
Merged-chrUn_JH584304-26559-1	chrUn_JH584304	26459	26659	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33130.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	76.71	68.29	78.89	36.65
Merged-chr7-105736509-3	chr7	105736395	105736595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	89.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	193.01	227.13	195.1	180.99	187.78	242.39	181.03	221.22	207.31	171.72	277.87	113.09
Merged-chr1-86492905-3	chr1	86492816	86493016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33641.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	20.19	21.38	18.83	24.53	29.05	42.02	30.89	55.21	37.76	31.63	52.26	33.83
Merged-chr10-81524431-3	chr10	81524277	81524477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-152.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	85.6	55.59	60.47	59.53	81.82	66.48	77.73	94.85	74.74	65.27	81.4	42.92
Merged-chr17-21383763-3	chr17	21383663	21383863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172486)	promoter-TSS (NM_172486)	15.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	36.34	33.96	34.8	43.44	47.05	49.86	32.88	38.36	48.39	67.78	98.99	44.48
Merged-chr12-20921189-3	chr12	20921061	20921261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-105382.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	20.19	15.59	22.82	20.51	19.64	21.64	21.26	23.24	26.75	29.62	41.2	23.81
Merged-chr2-167496564-3	chr2	167496461	167496661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030743, intron 1 of 7)	L3|LINE|CR1	-3687.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	149.4	124.51	104.96	62.74	121.91	213.86	64.77	86.69	152.24	137.58	118.08	62.97
Merged-chr5-114916921-3	chr5	114916821	114917021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6319.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	26.65	27.17	19.4	20.11	49.5	69.93	43.51	63.08	32.06	47.2	37.69	15.04
Merged-chr11-107327556-3	chr11	107327461	107327661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-138180.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	98.53	54.83	87.28	115.43	132.55	86.23	101.31	127.63	109.95	79.33	147.23	71.42
Merged-chr8-47714136-3	chr8	47714045	47714245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-214.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	202.71	170.79	223.05	214.37	272.05	271.24	199.63	248.69	277.92	278.17	380.88	145.36
Merged-chr10-37400505-3	chr10	37400401	37400601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261575.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	33.11	27.17	31.95	37.0	24.14	28.22	18.27	43.99	43.47	24.1	44.22	23.49
Merged-chr1-154118126-3	chr1	154118040	154118240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-83047.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	54.11	48.8	63.32	53.89	46.23	44.21	39.53	43.37	57.43	64.27	59.8	32.58
Merged-chr10-93268520-3	chr10	93268428	93268628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	L1MB3|LINE|L1	42631.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	42.4	32.95	32.52	46.66	68.32	67.42	59.13	69.11	55.47	73.31	71.86	43.86
Merged-chr19-34922311-3	chr19	34922219	34922419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-39.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	139.71	117.97	95.27	90.9	109.64	108.18	65.44	116.86	132.57	111.97	135.67	79.88
Merged-chr3-37313608-3	chr3	37313509	37313709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001255992, intron 1 of 1)	L2|LINE|L2	1055.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	34.73	34.96	51.34	34.19	23.73	27.59	39.86	39.22	32.45	33.14	41.2	22.56
Merged-chr3-28805456-3	chr3	28805361	28805561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-47.0	NR_154889	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	253.99	234.93	243.01	202.71	269.6	321.73	197.31	307.71	365.64	362.52	406.01	213.33
Merged-chr5-145114753-3	chr5	145114634	145114834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	CpG	478.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	35.53	37.48	50.77	31.37	60.96	44.84	44.51	48.62	56.06	73.81	99.49	59.52
Merged-chr10-10460335-1	chr10	10460235	10460435	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	L1MEd|LINE|L1	11979.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	8.48	4.78	6.85	8.04	4.5	1.88	0.66	4.79	91.46	57.74	64.32	16.6
Merged-chr13-8885765-3	chr13	8885638	8885838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145360, exon 1 of 5)	5' UTR (NM_145360, exon 1 of 5)	132.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	98.12	120.98	119.23	115.03	103.09	133.27	162.76	115.96	118.41	123.02	142.2	103.38
Merged-chr16-32124542-3	chr16	32124457	32124657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24755.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	59.76	54.83	49.06	42.63	42.55	84.66	17.61	46.68	72.38	53.73	57.28	32.89
Merged-chr13-40953426-3	chr13	40953328	40953528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	MER20|DNA|hAT-Charlie	35794.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	14.94	16.35	30.23	14.88	38.05	47.35	24.58	39.93	42.88	49.21	33.67	18.17
Merged-chr6-40576513-3	chr6	40576417	40576617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	5129.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	65.82	59.61	66.74	57.92	69.14	88.11	46.5	80.27	74.74	72.81	64.82	35.09
Merged-chr13-95869014-3	chr13	95868909	95869109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	22913.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	35.13	36.72	42.21	56.31	65.05	54.56	55.14	74.38	126.86	104.44	183.41	82.39
Merged-chr8-10840743-1	chr8	10840643	10840843	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41711.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.85	7.8	3.99	7.64	1.64	3.76	5.98	9.93	4.33	4.52	6.53	4.07
Merged-chr2-129295729-1	chr2	129295629	129295829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181589, intron 2 of 8)	intron (NM_181589, intron 2 of 8)	1483.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	9.69	16.35	0.0	2.01	4.09	12.86	0.0	0.64	3.15	1.0	1.0	0.94
Merged-chr6-50252879-3	chr6	50252771	50252971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018769, intron 1 of 9)	MLTR11B|LTR|ERVK	8898.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	46.84	32.95	87.28	106.99	49.91	46.72	82.71	86.8	37.96	36.65	78.39	41.66
Merged-chr10-80343013-4	chr10	80342946	80343146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104340, intron 7 of 11)	G-rich|Low_complexity|Low_complexity	5402.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	19.79	13.58	20.54	19.31	33.96	28.85	32.88	20.05	33.04	41.17	35.17	20.36
Merged-chr17-17901877-3	chr17	17901750	17901950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14026.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	24.63	28.42	20.54	18.5	45.82	38.57	40.52	29.72	41.5	33.64	35.17	15.04
Merged-chr19-32181408-3	chr19	32181318	32181518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	29595.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	50.88	57.35	45.07	48.26	102.28	155.22	105.96	84.95	60.78	68.79	59.8	26.94
Merged-chr5-139252631-3	chr5	139252513	139252713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	289.0	NM_026269	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	55.32	71.18	57.62	63.95	60.96	62.09	64.44	55.26	53.7	66.78	69.85	29.76
Merged-chr8-84237765-3	chr8	84237644	84237844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-702.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	47.65	38.99	35.94	29.76	40.09	54.25	22.92	23.1	55.07	41.17	57.28	21.93
Merged-chr13-55895772-3	chr13	55895690	55895890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64365.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	65.82	88.29	92.98	90.9	60.55	101.6	90.02	85.88	91.46	105.44	105.52	64.85
Merged-chr11-109417687-2	chr11	109417585	109417785	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8261.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.25	12.83	5.13	2.41	46.23	79.02	46.17	45.11	46.03	60.75	62.81	41.98
Merged-chr10-62506388-3	chr10	62506271	62506471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	1386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	95.3	99.35	118.08	112.21	96.14	153.34	104.3	150.37	155.19	120.0	166.32	104.0
Merged-chr11-44378068-3	chr11	44377957	44378157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22006.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	112.66	102.62	104.96	98.14	95.73	147.69	77.73	101.22	121.95	123.52	124.11	70.17
Merged-chr2-22752706-3	chr2	22752603	22752803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21624.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	41.19	41.75	51.34	67.57	29.86	48.6	28.9	39.7	40.52	54.23	65.32	34.77
Merged-chr2-61578573-3	chr2	61578487	61578687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	1.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	78.34	113.69	67.88	102.96	90.41	121.04	101.98	57.62	150.07	142.1	121.1	72.99
Merged-chr10-76032563-3	chr10	76032451	76032651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177475)	promoter-TSS (NM_177475)	-61.0	NM_177475	64453.0	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	106.2	75.71	103.82	85.27	112.5	109.44	85.7	126.39	138.08	135.07	193.96	86.15
Merged-chr8-39619982-3	chr8	39619894	39620094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031195, exon 5 of 9)	exon (NM_031195, exon 5 of 9)	22684.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	50.47	36.47	54.19	57.92	59.73	64.91	40.19	88.57	66.48	61.26	92.96	35.71
Merged-chr5-144252337-3	chr5	144252239	144252439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	-2886.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	69.05	76.46	73.02	55.1	119.46	95.95	72.75	72.65	88.31	79.83	79.89	41.04
Merged-chr4-6383623-3	chr4	6383518	6383718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016807, intron 4 of 8)	RLTR49|LTR|ERVK	17938.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	222.49	226.88	196.81	216.38	245.87	258.38	199.97	224.92	243.89	227.45	275.86	138.46
Merged-chr15-101113393-3	chr15	101113298	101113498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2357.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	44.42	43.77	43.35	57.11	39.68	54.56	39.2	53.27	45.83	61.76	45.73	38.53
Merged-chr1-180231807-3	chr1	180231693	180231893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128605, intron 7 of 10)	L1MB3|LINE|L1	14157.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	49.67	39.24	42.78	33.78	23.73	41.39	24.25	30.08	39.93	32.64	34.17	19.74
Merged-chr7-28277706-3	chr7	28277602	28277802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-4.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	30.69	18.61	15.4	15.69	30.68	26.03	8.3	26.3	40.91	37.66	34.17	21.3
Merged-chr19-37963897-1	chr19	37963797	37963997	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79680.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	20.59	18.11	16.54	22.12	17.59	24.77	13.95	28.68	21.44	25.11	18.59	14.72
Merged-chr10-37106417-3	chr10	37106327	37106527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32499.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	18.98	16.1	30.8	29.76	17.59	29.48	13.95	21.79	24.39	26.11	33.67	12.22
Merged-chr2-35132265-3	chr2	35132177	35132377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290635)	promoter-TSS (NM_001290635)	43.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	86.41	84.51	118.08	101.35	94.5	96.89	87.03	96.7	80.25	93.39	111.05	56.39
Merged-chr10-86990051-3	chr10	86989947	86990147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17895.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	62.59	53.83	75.3	41.83	58.09	70.87	53.15	61.32	67.27	49.21	83.41	36.34
Merged-chr1-191325871-3	chr1	191325781	191325981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-84.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	107.41	97.09	115.8	128.7	108.82	129.51	86.36	127.18	208.29	197.33	249.73	100.87
Merged-chr18-82856607-3	chr18	82856517	82856717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_125720, exon 2 of 3)	non-coding (NR_125720, exon 2 of 3)	720.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	29.07	35.47	19.97	18.5	28.64	47.35	16.61	32.55	48.98	63.77	56.78	29.76
Merged-chr16-91647054-3	chr16	91646962	91647162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-90.0	NM_001357351	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	77.53	84.76	92.41	80.44	78.96	102.85	72.41	84.45	94.41	96.4	125.62	66.41
Merged-chr5-150118587-3	chr5	150118540	150118740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	99965.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	36.75	27.42	29.66	32.18	75.28	83.1	66.77	111.22	72.18	86.86	138.69	62.65
Merged-chr11-80428586-3	chr11	80428482	80428682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-33.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	52.09	56.09	67.88	57.92	82.64	68.67	41.19	58.32	79.46	93.39	87.93	58.27
Merged-chr10-37228092-3	chr10	37228009	37228209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	69.05	69.92	48.49	31.77	72.41	101.91	64.11	55.23	97.75	82.85	81.4	30.07
Merged-chr3-75957023-3	chr3	75956929	75957129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	-80.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	129.21	116.21	149.46	195.47	164.05	171.84	143.83	238.51	147.12	159.67	268.83	127.19
Merged-chr2-116975999-3	chr2	116975880	116976080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	75828.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	58.95	58.35	42.78	39.42	31.91	78.39	36.54	26.05	57.83	59.75	72.36	29.76
Merged-chr16-4896812-3	chr16	4896723	4896923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	10723.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	40.38	31.19	35.37	21.32	58.09	90.94	43.51	33.76	81.63	80.84	43.72	29.45
Merged-chr4-109676626-3	chr4	109676537	109676737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	10.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	99.33	91.56	77.01	74.81	110.05	99.4	79.06	96.7	117.42	119.0	140.7	63.59
Merged-chr3-95217974-3	chr3	95217857	95218057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172512)	promoter-TSS (NM_172512)	-15.0	NM_029885	213054.0	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	31.09	31.94	30.23	28.15	29.05	26.03	13.95	22.21	34.42	35.15	39.7	14.72
Merged-chr17-66518997-3	chr17	66518896	66519096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	674.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	33.92	47.04	76.44	30.57	35.59	76.2	29.9	21.34	73.95	60.75	60.3	21.62
Merged-chr4-53159441-2	chr4	53159329	53159529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	466.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	53.7	38.23	47.92	45.45	47.46	58.64	36.21	36.48	56.25	55.73	68.34	31.95
Merged-chr11-115066955-3	chr11	115066856	115067056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4917.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	83.18	67.66	77.58	61.94	48.27	85.61	47.5	39.9	69.04	85.36	60.8	52.94
Merged-chr1-51930806-3	chr1	51930718	51930918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14840.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	53.3	53.83	78.15	52.29	85.5	119.16	72.75	85.18	53.7	42.18	93.46	28.19
Merged-chr11-68503015-3	chr11	68502910	68503110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-9.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	49.67	34.71	23.96	35.39	36.0	43.27	25.91	28.4	47.21	53.73	47.23	18.48
Merged-chr13-73331049-3	chr13	73330954	73331154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053163)	promoter-TSS (NM_053163)	45.0	NM_053163	94066.0	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	31.09	32.7	21.68	51.48	31.91	30.1	57.47	31.85	50.94	42.68	44.22	37.91
Merged-chr5-124052314-3	chr5	124052201	124052401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20041.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	85.2	49.05	70.17	49.07	99.41	133.27	75.73	82.04	109.36	126.03	67.33	63.91
Merged-chr8-33471283-1	chr8	33471183	33471383	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13028.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.0	0.25	0.0	0.0	0.0	0.0	0.0	0.73	20.06	22.59	5.02	6.27
Merged-chr15-38472848-3	chr15	38472736	38472936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17711.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	27.46	33.45	42.21	34.99	45.0	44.84	62.12	58.51	52.71	62.76	57.28	36.65
Merged-chrX-93757103-3	chrX	93757008	93757208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74987.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	52.09	38.99	44.5	41.02	53.59	48.29	30.23	51.87	57.43	59.75	79.89	38.85
Merged-chr8-61561578-3	chr8	61561468	61561668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29601.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	27.46	37.98	43.35	23.73	29.46	38.57	25.24	24.0	40.32	28.12	41.71	21.3
Merged-chr8-107293406-3	chr8	107293300	107293500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133957)	promoter-TSS (NM_133957)	-70.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	105.79	102.87	112.38	85.67	107.19	91.56	79.72	77.8	127.26	126.53	92.96	62.03
Merged-chr17-34647106-3	chr17	34647004	34647204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-42.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	154.65	152.43	128.35	146.4	139.1	180.62	63.78	127.74	188.82	191.8	216.57	106.2
Merged-chr10-93070841-3	chr10	93070749	93070949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	10747.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	136.89	117.72	112.95	103.37	155.05	174.97	120.25	133.09	160.1	171.72	198.98	106.51
Merged-chr10-42504467-3	chr10	42504354	42504554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	2400.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	33.92	21.63	21.68	33.38	27.0	20.38	19.93	35.83	40.52	23.6	29.14	22.87
Merged-chr11-75153384-3	chr11	75153273	75153473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14779.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	39.17	23.14	42.78	28.15	39.68	56.76	22.59	39.79	45.04	43.18	50.25	33.52
Merged-chr10-78487860-3	chr10	78487759	78487959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22911.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	20.59	20.88	19.97	14.08	27.41	16.93	11.29	20.36	30.49	33.14	26.63	17.54
Merged-chr2-69719566-3	chr2	69719465	69719665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-3523.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	49.26	74.45	48.49	41.83	66.27	98.78	53.81	40.23	93.43	100.42	74.37	39.16
Merged-chr6-147475922-3	chr6	147475834	147476034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025911)	promoter-TSS (NM_025911)	63.0	NM_001355715	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	41.99	38.23	37.65	36.6	64.23	43.59	69.09	40.91	25.96	29.62	47.74	25.06
Merged-chr11-113766519-3	chr11	113766416	113766616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14701.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	34.32	48.29	27.95	15.69	44.18	79.96	39.86	22.32	64.32	87.37	59.8	41.98
Merged-chr2-57182444-1	chr2	57182344	57182544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	613.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	21.8	15.59	17.11	27.35	6.95	10.66	3.99	9.48	10.03	9.04	13.57	2.19
Merged-chr3-95650759-3	chr3	95650650	95650850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7971.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	98.53	107.91	106.68	115.03	126.82	137.03	109.28	103.23	123.13	150.63	115.57	87.4
Merged-chr4-133169693-3	chr4	133169581	133169781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25974.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	29.88	22.39	56.48	35.39	47.05	43.59	30.89	50.07	50.94	37.16	70.85	30.07
Merged-chr5-16470079-3	chr5	16470000	16470200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83395.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	187.36	135.07	175.7	234.08	178.78	143.93	181.7	251.02	190.0	174.73	247.72	126.87
Merged-chrX-168673515-3	chrX	168673418	168673618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010832, intron 1 of 11)	CpG	384.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	67.03	58.61	69.03	92.51	75.68	93.44	60.12	94.07	87.72	105.44	131.15	47.93
Merged-chr10-7780989-3	chr10	7780869	7781069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-52.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	114.27	87.03	99.26	61.94	107.59	142.68	58.13	92.3	152.24	146.11	168.33	78.0
Merged-chr2-170202174-3	chr2	170202075	170202275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59500.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	31.5	21.88	39.36	33.78	51.96	42.02	26.24	41.47	42.09	19.58	41.2	19.11
Merged-chr17-78200097-3	chr17	78199975	78200175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015800)	promoter-TSS (NM_015800)	-173.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	65.41	54.83	51.34	69.98	71.18	62.71	60.79	75.28	64.32	75.82	96.98	48.24
Merged-chr1-152800203-3	chr1	152800139	152800339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	86.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	20.59	14.09	15.4	22.52	13.5	17.56	13.62	22.82	23.6	24.1	33.16	18.48
Merged-chr10-60274095-3	chr10	60273980	60274180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3548.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	34.73	20.88	32.52	29.76	36.0	30.1	23.92	42.36	47.01	52.22	53.77	32.58
Merged-chr8-69832459-3	chr8	69832365	69832565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024954)	promoter-TSS (NM_001024954)	-159.0	NM_001357308	80720.0	Mm.210823	NM_001024954	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	56.94	57.6	53.05	52.69	30.68	47.04	35.21	32.41	78.68	96.91	137.18	67.67
Merged-chr5-146806056-3	chr5	146805936	146806136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11080.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	81.97	59.61	98.12	133.93	86.73	92.5	119.91	114.79	94.41	80.34	104.52	73.93
Merged-chr4-62266297-3	chr4	62266218	62266418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-20111.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.46	15.59	24.53	7.24	4.09	25.4	23.58	2.02	36.58	25.61	37.69	18.48
Merged-chr13-6461597-3	chr13	6461471	6461671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86586.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	20.19	11.07	17.11	24.53	30.68	40.76	58.13	59.94	23.8	31.13	44.22	14.72
Merged-chr8-13677682-3	chr8	13677576	13677776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-89.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	172.82	172.05	198.52	194.66	191.87	229.54	177.05	258.9	217.73	182.77	301.99	133.76
Merged-chr11-101982030-3	chr11	101981936	101982136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	2755.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	106.6	91.05	121.51	82.45	73.64	103.79	34.88	50.19	134.93	139.08	141.2	87.09
Merged-chr19-6909671-3	chr19	6909588	6909788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026306)	promoter-TSS (NM_026306)	-10.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	54.11	61.12	70.74	46.66	67.5	82.47	37.2	34.91	77.1	84.35	88.44	46.99
Merged-chr17-25015959-3	chr17	25015883	25016083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-103.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	192.21	189.9	167.71	137.15	213.55	231.73	109.28	166.26	229.34	236.49	256.27	146.92
Merged-chr11-117987296-3	chr11	117987190	117987390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	CpG	433.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	29.88	31.19	39.36	33.38	37.64	56.44	26.91	31.35	41.7	57.24	37.69	26.0
Merged-chr16-20425937-3	chr16	20425854	20426054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 1 of 6)	CpG	440.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	40.38	29.18	38.22	30.57	28.23	52.37	39.2	28.57	45.43	51.72	61.81	35.4
Merged-chr4-129625320-4	chr4	129625257	129625457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199695)	TTS (NM_001199695)	-1449.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	15.34	9.56	9.13	8.45	10.64	21.95	13.95	10.93	24.19	29.62	20.6	16.29
Merged-chr9-20952815-4	chr9	20952704	20952904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199433)	promoter-TSS (NM_001199433)	175.0	NM_010066	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	33.52	60.87	35.37	41.83	34.77	49.86	48.16	33.2	37.57	41.17	32.66	25.37
Merged-chr16-36633769-3	chr16	36633673	36633873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	32304.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	25.44	14.09	28.52	17.7	15.55	26.34	20.26	20.72	40.52	42.68	51.25	23.81
Merged-chrX-7864743-3	chrX	7864636	7864836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290537, intron 3 of 9)	intron (NM_001290537, intron 3 of 9)	-13570.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	33.92	26.91	29.66	29.36	28.64	32.93	32.88	24.84	35.6	22.09	38.19	13.78
Merged-chr7-45277446-3	chr7	45277347	45277547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5426.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	22.61	28.17	27.38	18.9	27.0	45.78	15.28	28.96	36.19	29.62	34.67	26.63
Merged-chr14-19771451-3	chr14	19771364	19771564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	20207.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	56.13	47.79	82.15	71.59	58.91	51.43	53.81	65.55	54.48	33.14	51.76	14.1
Merged-chr7-126144517-3	chr7	126144427	126144627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 8 of 23)	MTD|LTR|ERVL-MaLR	55974.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	53.3	29.68	48.49	30.97	47.46	70.55	28.57	48.34	55.86	50.71	61.3	31.33
Merged-chr2-118540429-3	chr2	118540316	118540516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4171.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	47.24	42.26	56.48	37.81	68.32	60.21	47.5	49.93	104.05	83.85	88.44	60.15
Merged-chr15-81960956-3	chr15	81960857	81961057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282040)	promoter-TSS (NM_001282040)	-27.0	NM_001282041	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	125.98	126.77	135.2	127.5	130.91	179.68	104.3	127.29	139.85	125.53	168.33	78.63
Merged-chr10-95515681-2	chr10	95515567	95515767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	CpG	505.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	25.84	23.14	25.67	27.75	24.55	25.4	20.93	29.52	26.75	27.11	34.17	20.68
Merged-chr10-7955437-3	chr10	7955350	7955550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138667, intron 1 of 6)	CpG	673.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	42.8	37.98	57.05	47.06	32.32	55.82	63.78	45.62	55.07	57.74	57.28	39.16
Merged-chr8-64733746-3	chr8	64733650	64733850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-172.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	248.33	280.71	255.56	269.88	310.1	354.96	282.35	339.73	355.61	337.92	544.19	189.21
Merged-chr17-23924838-3	chr17	23924743	23924943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7385.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	58.15	39.74	108.39	42.23	94.5	105.36	60.79	99.03	113.88	97.91	158.78	72.99
Merged-chr14-61548763-3	chr14	61548668	61548868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310603, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	8118.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	29.07	25.91	42.21	20.11	32.32	128.25	53.48	50.72	65.69	58.75	63.31	57.64
Merged-chr2-98666870-1	chr2	98666770	98666970	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199213.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1017.97	881.35	997.73	778.26	1157.76	575.72	1473.18	598.91	795.6	1124.72	748.7	1086.72
Merged-chr1-138127018-3	chr1	138126918	138127118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48108.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	18.98	17.36	22.82	24.94	48.27	47.98	28.57	44.86	37.76	33.14	45.22	16.29
Merged-chrX-16618535-3	chrX	16618457	16618657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1141.0	NM_173740	17161.0	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	18.98	16.6	29.66	19.71	66.68	78.71	46.17	84.73	30.09	18.58	30.65	15.04
Merged-chr6-90369530-3	chr6	90369424	90369624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030260)	promoter-TSS (NM_030260)	30.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	120.33	104.38	103.82	124.28	119.05	116.96	82.05	132.81	149.68	100.92	164.81	104.63
Merged-chr1-34459697-3	chr1	34459601	34459801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011206)	promoter-TSS (NM_011206)	-45.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	37.55	27.92	38.79	39.42	47.46	30.42	25.58	45.73	39.34	41.17	44.22	21.93
Merged-chr1-9945346-3	chr1	9945255	9945455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1237.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	41.99	35.97	62.18	61.13	33.96	37.94	24.58	56.19	48.39	43.68	57.28	35.4
Merged-chr15-74930504-3	chr15	74930402	74930602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24549.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	40.78	33.45	45.07	43.84	28.23	30.42	16.61	36.36	43.66	22.09	35.17	30.39
Merged-chr4-72379691-3	chr4	72379603	72379803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178459.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	133.66	123.5	118.08	111.41	139.5	158.04	113.93	129.65	137.09	142.6	132.66	78.0
Merged-chr10-118883495-3	chr10	118883378	118883578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14575.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	124.77	135.07	111.81	63.95	127.64	235.81	103.31	50.94	179.97	201.85	133.16	56.39
Merged-chr11-88864666-3	chr11	88864577	88864777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-91.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	97.31	75.46	112.95	123.88	69.14	70.55	63.44	60.76	59.01	55.73	72.36	41.66
Merged-chr18-60804326-1	chr18	60804226	60804426	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	B1_Mm|SINE|Alu	477.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	1.21	0.0	1.14	0.0	0.0	2.2	0.0	0.0	74.35	93.89	49.75	34.15
Merged-chr7-80803363-3	chr7	80803237	80803437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-6.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	134.46	142.36	147.18	148.01	172.23	204.14	157.45	165.45	194.72	216.91	257.77	141.28
Merged-chr11-103382087-3	chr11	103382002	103382202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-18410.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	98.12	78.23	90.13	118.25	96.55	90.62	81.05	86.64	65.1	78.33	92.46	56.39
Merged-chr13-45389667-3	chr13	45389570	45389770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-72.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	211.99	208.77	200.23	174.15	222.14	280.96	160.11	198.56	242.52	257.08	238.68	138.78
Merged-chr8-22883040-1	chr8	22882940	22883140	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	RSINE1|SINE|B4	23501.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.85	6.04	5.13	16.49	3.27	0.63	8.64	13.12	11.6	2.51	5.02	4.07
Merged-chr16-44757906-3	chr16	44757815	44758015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7821.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	18.57	11.57	50.77	29.76	35.18	52.37	27.24	46.82	46.62	34.65	45.73	23.18
Merged-chr5-43872050-3	chr5	43871959	43872159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	3250.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	28.27	42.01	33.09	40.22	40.91	35.75	27.9	23.55	68.64	59.25	73.86	28.51
Merged-chr6-57790742-3	chr6	57790634	57790834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34391.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	23.82	16.1	33.09	23.33	32.32	25.09	32.55	33.48	33.44	27.11	55.78	21.93
Merged-chr16-33573934-3	chr16	33573840	33574040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	MIR3|SINE|MIR	55345.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	143.35	108.41	116.94	94.92	131.32	180.62	86.7	102.39	159.91	155.65	150.74	70.48
Merged-chr7-130646179-3	chr7	130646068	130646268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	CpG	-46388.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	26.25	29.68	16.54	20.11	24.55	37.63	17.61	30.17	26.95	30.63	51.76	30.39
Merged-chr5-140830606-3	chr5	140830518	140830718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010302)	promoter-TSS (NM_010302)	-187.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	203.51	213.3	209.93	211.96	229.1	308.87	167.41	201.53	254.51	277.16	274.36	164.78
Merged-chr4-126537009-3	chr4	126536895	126537095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3537.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	41.19	42.51	73.59	69.58	40.91	67.73	39.86	60.95	54.68	43.18	80.9	30.7
Merged-chr12-82169322-3	chr12	82169225	82169425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-691.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	75.51	62.13	61.04	43.04	81.0	104.73	38.86	60.7	114.67	99.92	109.54	57.64
Merged-chr6-129363435-3	chr6	129363345	129363545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177686, intron 5 of 5)	L1_Mus2|LINE|L1	13201.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	21.0	16.35	30.8	40.62	44.59	55.5	66.1	38.89	28.32	39.67	23.62	18.48
Merged-chrX-169981137-1	chrX	169981037	169981237	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 4 of 9)	intron (NM_010797, intron 4 of 9)	-2220.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	517.88	465.95	444.19	249.99
Merged-chr5-75044605-3	chr5	75044491	75044691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	50.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	40.78	43.01	38.22	17.7	62.18	77.45	46.5	43.79	65.1	89.37	103.51	26.31
Merged-chr9-37489107-3	chr9	37489010	37489210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-211.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	48.46	55.34	49.06	68.78	69.14	70.55	104.3	76.29	57.43	61.76	84.92	42.29
Merged-chr4-46553968-3	chr4	46553878	46554078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	12462.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	22.21	15.09	29.09	9.25	29.46	20.07	26.57	30.11	27.14	26.11	38.19	26.94
Merged-chr16-44187341-1	chr16	44187241	44187441	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	13944.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	9.29	3.27	3.42	0.8	15.14	4.08	1.33	10.49	5.11	1.0	4.02	1.25
Merged-chr2-35342811-1	chr2	35342711	35342911	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5802.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	2.42	1.51	3.42	3.22	4.09	10.98	4.65	8.02	9.64	7.03	3.01	2.51
Merged-chr8-35639231-1	chr8	35639131	35639331	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-50211.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	40.12	29.12	73.86	29.13
Merged-chr19-36834268-3	chr19	36834191	36834391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	59.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	48.46	42.51	50.77	55.1	65.46	67.1	39.53	55.43	57.24	59.75	79.89	40.41
Merged-chr13-3523645-3	chr13	3523531	3523731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-14444.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	25.84	23.14	35.94	34.19	27.0	13.8	16.28	40.68	14.16	22.09	22.11	17.23
Merged-chr15-58732166-3	chr15	58732055	58732255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91272.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	20.59	11.82	26.81	25.74	18.0	20.7	28.57	30.42	27.14	27.62	25.12	17.23
Merged-chr15-78900658-3	chr15	78900529	78900729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316685, intron 1 of 17)	intron (NM_001316685, intron 1 of 17)	861.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	26.65	33.96	18.25	12.47	21.27	23.83	22.26	19.99	26.36	40.17	17.59	20.05
Merged-chr6-42265613-3	chr6	42265508	42265708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	623.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	34.73	33.45	58.76	46.66	47.05	45.47	32.22	62.61	50.16	60.25	54.77	36.03
Merged-chr10-120163710-3	chr10	120163624	120163824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37873.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	72.28	54.58	103.82	94.52	68.32	113.51	76.73	119.75	114.28	98.41	150.74	70.48
Merged-chr4-109476677-3	chr4	109476578	109476778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013876)	promoter-TSS (NM_013876)	-173.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	68.24	61.12	75.3	65.16	63.82	74.32	57.47	95.44	98.15	68.29	151.75	79.88
Merged-chr12-111035350-3	chr12	111035261	111035461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4437.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	20.59	20.63	19.97	26.55	40.5	24.46	19.27	23.86	38.16	48.2	52.76	18.17
Merged-chr6-49319226-3	chr6	49319126	49319326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-48.0	NM_175098	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	128.0	106.4	106.1	112.62	171.82	175.6	106.96	146.86	214.39	248.54	308.02	134.08
Merged-chr2-181193213-3	chr2	181193100	181193300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5953.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	29.48	15.85	54.76	21.72	20.86	17.56	32.88	41.33	21.83	19.08	38.19	20.05
Merged-chr5-99360344-3	chr5	99360235	99360435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-107408.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	39.57	45.78	65.03	37.4	59.73	55.5	43.18	73.6	51.73	32.64	34.67	25.69
Merged-chr10-75675825-3	chr10	75675736	75675936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31828.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	13.73	15.34	39.36	13.27	34.77	23.52	19.6	32.86	31.27	24.1	46.73	19.11
Merged-chr6-124805772-3	chr6	124805660	124805860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2901.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	82.37	79.48	71.31	67.57	84.28	102.85	47.83	65.97	90.08	99.42	110.04	66.1
Merged-chr11-83649535-3	chr11	83649430	83649630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011337)	promoter-TSS (NM_011337)	-152.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	106.2	71.94	116.37	132.73	88.78	148.95	86.36	114.34	116.05	132.05	143.71	88.97
Merged-chr17-70849196-3	chr17	70849106	70849306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	584.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	67.03	98.35	71.31	67.17	48.27	110.69	60.79	40.46	115.26	110.46	144.21	60.15
Merged-chr8-128078892-3	chr8	128078791	128078991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	199334.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	41.59	53.32	48.49	76.42	51.55	63.97	41.85	74.19	75.53	74.81	93.46	58.58
Merged-chr1-177796106-3	chr1	177796004	177796204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007422, intron 1 of 12)	CpG	405.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	28.67	31.94	18.83	20.51	25.77	35.43	39.2	15.39	49.37	49.21	40.7	17.86
Merged-chr3-51416642-3	chr3	51416544	51416744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053089, intron 1 of 19)	CpG	628.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	16.56	19.37	5.13	14.88	22.5	15.99	12.29	18.62	20.26	26.11	31.66	19.42
Merged-chr2-32495476-3	chr2	32495393	32495593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39866.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	35.53	15.09	35.37	26.55	33.55	21.32	34.55	39.22	44.84	23.1	36.18	35.09
Merged-chr5-150595566-3	chr5	150595459	150595659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1034.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	260.85	237.44	237.31	234.08	262.24	291.31	193.32	216.84	292.67	269.13	338.17	187.96
Merged-chr2-169777416-1	chr2	169777316	169777516	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	143770.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.5	0.0	0.8	2.05	0.0	0.0	0.0	18.29	7.03	30.65	17.23
Merged-chr2-27763585-3	chr2	27763482	27763682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011305)	TTS (NM_011305)	52999.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	100.55	90.3	91.84	68.78	109.23	151.77	112.61	131.19	128.83	96.91	135.17	64.85
Merged-chr2-124612505-3	chr2	124612445	124612645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	2249.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	30.69	26.16	101.54	71.99	43.77	30.1	100.98	79.12	104.44	38.16	113.06	75.81
Merged-chr2-130030054-2	chr2	130029944	130030144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009374, intron 7 of 12)	intron (NM_009374, intron 7 of 12)	-13636.0	NR_105757	102466628.0		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	37.96	44.02	47.92	27.75	2.86	6.9	3.32	1.88	57.83	47.2	43.72	28.19
Merged-chr1-128724700-3	chr1	128724595	128724795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-132396.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	81.57	59.36	68.45	104.97	90.0	76.51	124.23	127.68	115.26	137.58	132.66	80.51
Merged-chr13-58385059-3	chr13	58384985	58385185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027335, exon 1 of 4)	exon (NM_027335, exon 1 of 4)	140.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	26.65	36.72	27.95	27.75	25.77	26.34	30.89	33.06	24.19	28.12	16.08	14.41
Merged-chr1-24679182-3	chr1	24679092	24679292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	274.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	23.42	9.81	39.36	16.09	19.23	26.34	15.28	14.78	49.57	28.12	53.77	17.23
Merged-chr16-3884596-3	chr16	3884482	3884682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029090)	promoter-TSS (NM_029090)	-37.0	NM_029090	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	110.64	127.27	134.63	102.96	126.0	106.61	73.08	111.9	116.64	122.01	161.8	69.23
Merged-chr11-74524344-3	chr11	74524268	74524468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	65790.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	20.19	15.85	23.96	13.67	16.77	20.7	9.3	22.43	28.52	18.58	24.62	12.84
Merged-chr4-8854200-3	chr4	8854099	8854299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001277149, exon 29 of 38)	exon (NM_001277149, exon 29 of 38)	102875.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	179.29	170.03	225.9	233.68	183.28	187.83	168.41	260.94	237.21	252.06	342.69	180.75
Merged-chr15-73068222-2	chr15	73068123	73068323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7019.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	14.13	6.79	5.13	8.04	22.09	11.92	5.98	19.18	31.47	19.58	35.68	15.35
Merged-chr2-167538053-3	chr2	167537964	167538164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-131.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	31.5	27.92	30.8	43.84	30.27	37.63	15.94	40.93	40.91	56.74	45.73	22.87
Merged-chr13-109822635-3	chr13	109822539	109822739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81170.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	28.27	21.88	24.53	57.11	115.37	49.54	114.27	88.04	26.95	27.11	57.28	17.86
Merged-chr5-148495326-3	chr5	148495180	148495380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56393.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	133.66	188.14	172.28	187.83	160.78	214.48	178.38	129.93	173.68	169.71	186.92	113.72
Merged-chr18-70568209-3	chr18	70568098	70568298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311071)	promoter-TSS (NM_001311071)	-94.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	90.85	79.48	90.13	103.77	94.91	96.27	90.68	92.5	139.26	139.59	241.69	79.57
Merged-chr9-101074536-3	chr9	101074435	101074635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-227.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	65.01	51.81	47.92	43.04	69.96	86.86	52.48	75.81	104.83	120.51	190.44	65.79
Merged-chr2-117299898-3	chr2	117299797	117299997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	42980.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	73.09	87.53	62.18	49.87	66.27	141.11	85.37	66.42	130.6	128.04	126.12	52.0
Merged-chr9-45086404-2	chr9	45086307	45086507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	7224.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	40.38	40.24	57.05	51.88	38.46	29.48	26.57	37.23	5.31	3.01	6.53	3.45
Merged-chr6-53045683-3	chr6	53045576	53045776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	22948.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	27.05	30.69	26.24	31.37	18.41	18.81	21.26	31.49	19.08	17.07	33.67	19.11
Merged-chr11-4096759-3	chr11	4096656	4096856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144520)	TTS (NM_144520)	-1325.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	217.24	233.67	165.43	192.65	196.37	223.89	155.46	148.54	240.16	232.47	266.82	105.88
Merged-chr1-84407125-3	chr1	84407048	84407248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 9 of 12)	intron (NM_152915, intron 9 of 12)	-122503.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	64.2	70.93	62.75	83.26	108.0	80.59	66.77	99.81	95.0	128.04	134.67	66.41
Merged-chr9-59544933-3	chr9	59544816	59545016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	5376.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	100.55	89.8	90.7	142.38	94.91	110.38	103.64	107.38	120.96	100.42	134.67	67.67
Merged-chr5-33782351-1	chr5	33782251	33782451	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019694, intron 1 of 13)	CpG	353.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	14.13	7.55	9.13	7.64	14.73	15.37	4.98	12.11	14.16	18.08	15.58	13.16
Merged-chr19-61227280-3	chr19	61227166	61227366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009970, intron 2 of 11)	CpG-7695	1152.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	178.88	155.19	152.88	173.75	139.5	188.46	115.6	151.94	250.19	214.9	332.14	172.61
Merged-chr1-132316047-3	chr1	132315919	132316119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028778)	promoter-TSS (NM_028778)	-106.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	66.22	75.71	75.87	95.32	66.27	93.76	59.46	59.61	80.25	88.87	106.02	46.36
Merged-chr12-34787554-3	chr12	34787434	34787634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	129561.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	30.28	23.64	35.94	31.77	20.46	28.22	19.27	47.33	20.85	35.15	43.72	17.54
Merged-chr5-100635233-3	chr5	100635137	100635337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	39019.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	59.76	40.24	51.34	41.43	60.55	48.92	50.49	51.31	42.09	39.16	32.16	36.03
Merged-chr1-106345435-3	chr1	106345325	106345525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 8 of 16)	intron (NM_133821, intron 8 of 16)	173556.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	56.53	55.08	86.71	66.77	42.14	68.99	44.84	96.28	91.85	77.32	86.43	70.48
Merged-chr6-98091771-3	chr6	98091671	98091871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99988.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	14.54	20.63	30.8	24.13	30.27	45.47	30.56	44.1	51.73	44.69	39.19	31.01
Merged-chr16-58670352-3	chr16	58670238	58670438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007757, exon 1 of 7)	5' UTR (NM_007757, exon 1 of 7)	130.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	34.73	55.34	53.62	71.59	57.68	45.78	98.32	66.73	51.93	33.64	55.27	28.51
Merged-chr11-103249715-3	chr11	103249619	103249819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	17682.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	59.36	47.54	73.02	76.02	50.32	51.43	37.2	44.61	53.11	38.66	60.3	29.45
Merged-chr2-76071048-3	chr2	76070950	76071150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-89083.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	32.3	23.64	29.09	27.35	44.59	32.61	22.59	38.89	37.76	25.61	47.23	23.49
Merged-chr2-118549772-3	chr2	118549683	118549883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-97.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	129.21	121.74	115.23	115.03	132.55	188.14	97.66	112.6	130.99	139.59	156.77	67.98
Merged-chr12-35833491-3	chr12	35833406	35833606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92115.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	63.8	44.27	81.58	85.27	68.73	73.69	66.1	73.15	51.14	36.15	50.75	24.75
Merged-chr13-113623051-3	chr13	113622885	113623085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4421.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	26.25	31.69	21.68	32.18	43.36	39.2	39.86	42.5	50.94	41.67	68.84	42.6
Merged-chr10-14189303-3	chr10	14189199	14189399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	222920.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	56.13	35.72	42.78	54.3	56.87	70.87	61.45	56.16	70.81	55.23	66.33	23.18
Merged-chr19-12466284-3	chr19	12466171	12466371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010821)	TTS (NM_010821)	5492.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	125.58	147.9	85.0	93.31	123.14	141.73	79.39	81.62	77.69	45.19	41.2	31.64
Merged-chr2-31076541-3	chr2	31076456	31076656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	B3A|SINE|B2	19944.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	13.73	11.32	25.67	19.71	23.32	23.2	19.27	22.93	30.09	17.07	29.65	16.92
Merged-chr1-46854129-1	chr1	46854029	46854229	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-511.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	33.92	30.18	45.07	48.67	49.09	43.59	55.47	45.06	59.79	71.3	94.47	49.18
Merged-chr9-107261060-3	chr9	107260952	107261152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 4 of 7)	intron (NM_001316691, intron 4 of 7)	28344.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	22.61	22.89	28.52	15.69	34.36	37.63	11.29	37.49	41.3	38.66	49.75	24.43
Merged-chr10-30751780-3	chr10	30751669	30751869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	L2|LINE|L2	51557.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	46.03	37.73	70.74	55.5	72.82	65.85	59.79	80.24	56.25	61.26	104.52	46.68
Merged-chr10-5194862-4	chr10	5194753	5194953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-146.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	19.38	27.17	8.56	38.21	26.18	19.76	39.2	35.33	30.09	34.14	39.19	25.37
Merged-chr18-56451830-3	chr18	56451725	56451925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	19693.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	73.09	80.24	68.45	92.51	73.23	79.96	85.7	80.89	77.69	60.75	120.09	44.8
Merged-chr11-101552005-3	chr11	101551925	101552125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	-70.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	79.55	70.68	52.48	60.33	56.46	85.92	33.55	52.23	118.01	89.37	72.36	70.48
Merged-chr2-91206769-2	chr2	91206668	91206868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007387, exon 7 of 11)	exon (NM_007387, exon 7 of 11)	3856.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	31.9	42.26	47.35	49.47	35.59	61.46	46.84	41.61	60.97	59.75	69.34	40.72
Merged-chr2-177840354-3	chr2	177840241	177840441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	-5.0	NM_001024849	329575.0	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	-	predicted gene 14325	protein-coding	26.65	29.18	26.81	55.5	55.64	63.97	32.88	32.22	46.62	49.71	99.99	32.89
Merged-chr11-6267839-3	chr11	6267750	6267950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026538)	promoter-TSS (NM_026538)	-121.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	123.97	99.1	109.53	127.9	128.87	133.27	90.35	96.45	124.31	118.5	122.1	74.24
Merged-chr1-152021053-3	chr1	152020951	152021151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	69269.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	24.63	21.63	33.66	15.28	22.09	24.46	20.93	20.97	21.64	9.04	29.65	14.72
Merged-chr7-28437151-3	chr7	28437034	28437234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-313.0	NM_022024	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	70.66	68.92	82.72	65.16	71.18	88.11	67.43	74.05	93.03	111.47	128.13	61.09
Merged-chr4-62408721-3	chr4	62408611	62408811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	-72.0	NM_027297	70052.0	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	190.59	175.06	218.48	232.87	184.91	234.87	143.17	184.91	235.63	215.91	278.88	130.95
Merged-chr8-109682322-3	chr8	109682223	109682423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 3 of 10)	intron (NR_155034, intron 3 of 10)	10971.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	54.11	49.05	47.35	76.02	40.91	47.98	47.17	45.28	69.63	60.25	69.34	40.1
Merged-chr16-13668109-3	chr16	13667963	13668163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028761, exon 1 of 24)	5' UTR (NM_028761, exon 1 of 24)	107.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	108.62	105.64	116.94	131.92	152.6	148.32	103.31	115.4	135.91	116.99	166.82	68.61
Merged-chr13-24831573-3	chr13	24831459	24831659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	-70.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	169.59	134.57	124.36	153.24	166.91	173.41	98.32	152.55	189.8	212.39	243.7	118.41
Merged-chr10-62216916-3	chr10	62216818	62217018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	14300.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	140.92	93.82	120.37	154.44	96.14	99.4	170.07	171.17	107.0	86.86	88.44	75.81
Merged-chr16-33932307-3	chr16	33932142	33932342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	34796.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	27.46	7.8	35.94	30.57	43.36	28.54	32.22	44.22	19.47	16.07	30.15	13.78
Merged-chr15-95789712-2	chr15	95789602	95789802	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	3.63	2.52	3.99	0.0	27.41	46.72	28.9	43.51	55.66	33.64	52.76	32.58
Merged-chr4-141869811-6	chr4	141869714	141869914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	5106.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	23.42	31.94	33.09	27.75	25.77	35.75	30.56	17.58	41.89	62.26	64.82	25.06
Merged-chr6-39207531-2	chr6	39207399	39207599	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-726.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	29.48	12.32	8.56	6.84	10.23	24.15	15.61	23.89	24.78	17.57	37.69	15.04
Merged-chr1-92641943-3	chr1	92641843	92642043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028108)	promoter-TSS (NR_028108)	5.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	46.03	40.75	48.49	34.19	63.0	69.93	52.48	52.99	45.04	63.77	80.4	39.47
Merged-chr7-5020398-3	chr7	5020282	5020482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290426)	promoter-TSS (NM_001290426)	6.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	112.66	92.31	86.14	137.15	108.0	123.55	68.43	108.51	148.89	146.11	155.27	91.47
Merged-chr19-32108093-3	chr19	32107989	32108189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4949.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	43.61	54.08	57.62	63.55	45.0	41.39	68.76	47.8	34.22	43.68	42.21	25.37
Merged-chr9-111977938-3	chr9	111977819	111978019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140792.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	47.65	47.04	40.5	50.27	55.23	55.82	49.49	68.16	68.84	60.75	79.89	44.48
Merged-chr1-157549876-3	chr1	157549791	157549991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159986, intron 12 of 25)	intron (NM_001159986, intron 12 of 25)	23721.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	56.13	46.53	69.03	67.17	35.59	34.81	19.27	66.73	43.47	30.63	62.81	30.7
Merged-chr8-83972817-3	chr8	83972718	83972918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008854)	promoter-TSS (NM_008854)	-160.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	269.33	299.57	253.85	295.21	266.74	359.35	250.79	298.15	322.37	301.26	414.05	220.54
Merged-chr4-101264727-1	chr4	101264627	101264827	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	CpG	555.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	14.54	20.12	20.54	17.7	20.46	16.93	18.27	15.31	31.27	27.62	18.59	17.86
Merged-chr18-10533108-3	chr18	10533013	10533213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001083628, exon 19 of 33)	exon (NM_001083628, exon 19 of 33)	77239.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	62.59	51.56	94.7	83.66	65.46	86.55	67.43	113.1	107.98	58.24	118.08	55.13
Merged-chr9-25541570-3	chr9	25541475	25541675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	RLTR53_Mm|LTR|ERVK	59978.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	44.42	39.24	35.94	37.81	41.73	46.1	30.56	45.93	96.57	76.32	89.44	48.56
Merged-chr15-81101481-3	chr15	81101367	81101567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	3580.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	42.8	40.75	58.19	48.26	64.64	65.54	44.84	52.65	54.09	61.26	41.2	28.51
Merged-chr12-98901427-3	chr12	98901330	98901530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081191)	promoter-TSS (NM_001081191)	54.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	21.8	30.94	46.78	28.15	49.91	50.8	54.81	46.49	50.55	38.66	61.3	32.89
Merged-chr11-97766601-3	chr11	97766452	97766652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026186)	promoter-TSS (NM_026186)	61.0	NM_026186	67480.0	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	48.46	44.77	34.23	41.83	37.64	57.38	25.91	32.89	44.25	39.16	32.66	35.4
Merged-chr5-23410334-3	chr5	23410211	23410411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24042.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	54.11	27.17	51.91	88.48	45.0	32.93	35.21	44.07	35.21	35.65	55.78	32.27
Merged-chr1-191875884-3	chr1	191875786	191875986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30895.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	56.53	41.75	76.44	81.24	70.37	61.15	90.35	100.04	60.58	48.7	72.36	37.59
Merged-chr4-135439427-3	chr4	135439324	135439524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5619.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	66.22	36.97	77.01	69.98	74.87	92.5	48.16	76.43	75.33	79.83	86.43	54.82
Merged-chr3-37769509-3	chr3	37769400	37769600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45140.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	188.57	165.76	230.46	261.43	194.73	224.52	165.09	193.49	249.79	254.57	269.83	163.84
Merged-chr4-139214105-3	chr4	139214011	139214211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	20000.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	80.76	60.12	70.74	70.38	44.59	59.27	54.81	77.86	113.88	92.39	113.56	53.88
Merged-chr9-69989905-3	chr9	69989800	69990000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	CpG	434.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	67.43	73.7	79.86	86.47	72.0	84.04	56.47	67.63	67.46	74.81	102.0	48.24
Merged-chr16-75592841-3	chr16	75592760	75592960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198302)	promoter-TSS (NM_198302)	-31.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	27.05	32.45	27.95	37.81	36.41	47.04	32.88	53.41	34.62	39.16	84.42	20.36
Merged-chr16-57230986-3	chr16	57230870	57231070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	496.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	23.42	16.6	15.97	8.85	16.36	23.52	10.63	22.82	30.49	23.6	45.73	24.75
Merged-chr10-119065588-3	chr10	119065455	119065655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15056.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	115.08	98.35	140.9	110.2	130.91	152.71	94.34	130.51	192.36	167.2	227.12	123.74
Merged-chr13-55444568-1	chr13	55444468	55444668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001286063)	promoter-TSS (NM_001286063)	-504.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	29.88	22.39	27.95	24.53	31.09	25.09	25.24	16.32	28.52	36.15	27.13	20.99
Merged-chr14-75057049-3	chr14	75056950	75057150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	41023.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	94.08	81.5	87.28	104.57	85.91	116.96	59.13	86.58	84.77	117.49	108.03	50.44
Merged-chr13-92611023-3	chr13	92610915	92611115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172588)	promoter-TSS (NM_172588)	-123.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	128.41	113.69	170.0	191.85	218.46	177.8	129.88	214.68	191.97	149.13	249.73	117.47
Merged-chr11-5505998-3	chr11	5505910	5506110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14631.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	48.46	44.02	52.48	61.54	48.68	54.56	51.49	67.04	61.76	58.24	87.43	48.56
Merged-chr6-129400524-1	chr6	129400424	129400624	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3227.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	10.09	5.03	29.66	12.87	15.55	18.19	15.61	12.56	21.24	9.04	25.12	14.72
Merged-chr14-57571569-3	chr14	57571468	57571668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026526)	promoter-TSS (NM_026526)	1.0	NM_026526	68043.0	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	EEF1A alpha lysine methyltransferase 1	protein-coding	48.86	35.47	54.19	46.25	51.96	71.49	39.2	64.12	73.17	80.84	87.43	50.44
Merged-chr6-37464121-1	chr6	37464021	37464221	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-21973.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	2.42	5.28	26.81	7.24	0.0	2.51	1.33	0.0	48.78	70.8	69.85	39.16
Merged-chr17-24937008-3	chr17	24936860	24937060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163447)	promoter-TSS (NM_001163447)	17.0	NM_001163448	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	82.78	55.34	65.6	66.77	67.91	83.41	51.82	78.34	70.61	82.35	74.87	47.3
Merged-chr1-45795127-1	chr1	45795027	45795227	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028599)	promoter-TSS (NM_028599)	-39.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	10.09	10.31	9.7	11.66	15.14	15.37	18.27	18.08	23.01	37.66	24.62	20.36
Merged-chr5-34761681-3	chr5	34761602	34761802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-38.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	147.39	152.68	143.18	135.14	135.82	179.05	133.2	145.91	114.08	104.94	163.31	62.97
Merged-chr11-98710663-3	chr11	98710568	98710768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361995, intron 16 of 25)	intron (NM_001361995, intron 16 of 25)	9355.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	27.86	34.21	31.95	29.76	33.55	35.43	33.55	27.03	36.19	35.15	23.62	17.23
Merged-chr9-31009475-3	chr9	31009387	31009587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-21157.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	26.65	34.21	49.06	28.15	45.82	52.37	27.57	27.5	63.53	38.66	43.21	24.12
Merged-chr4-101292184-3	chr4	101292099	101292299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-26917.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	57.74	39.24	50.77	54.3	51.14	36.69	36.21	53.33	60.38	32.64	75.87	33.83
Merged-chr10-99461805-3	chr10	99461708	99461908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147363.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	58.95	27.92	42.78	41.83	48.68	34.49	45.18	54.56	40.71	36.15	53.77	31.33
Merged-chr11-46846129-2	chr11	46846030	46846230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35331.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	15.75	21.13	27.38	27.35	17.59	23.52	25.24	33.9	10.23	4.52	7.54	5.64
Merged-chr9-62955101-3	chr9	62954995	62955195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	25784.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	42.8	33.96	68.45	37.0	30.27	37.63	29.23	46.37	30.49	36.15	37.18	22.87
Merged-chr11-100414534-3	chr11	100414440	100414640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	279.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	21.4	28.17	24.53	34.19	32.32	39.51	16.94	24.7	25.77	23.6	29.14	24.12
Merged-chr6-4086937-3	chr6	4086835	4087035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-5.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	103.37	123.75	78.15	127.5	144.0	158.35	117.26	157.51	183.31	168.21	227.12	108.7
Merged-chr2-12208316-1	chr2	12208216	12208416	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-92930.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.4	3.52	5.7	11.26	4.09	3.14	9.63	9.64	2.16	4.02	1.0	7.52
Merged-chr3-27317061-3	chr3	27316993	27317193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	16.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	27.05	41.75	45.07	34.99	56.05	55.19	33.55	57.34	44.45	39.16	54.77	22.56
Merged-chr6-122856146-3	chr6	122856046	122856246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	11.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	101.35	93.82	116.37	111.41	100.64	140.17	73.74	121.12	108.38	111.47	158.28	71.74
Merged-chr5-64337270-2	chr5	64337169	64337369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106912.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	13.33	4.53	29.09	41.83	45.41	5.64	45.51	63.81	19.47	10.54	14.07	21.62
Merged-chr10-128747814-3	chr10	128747723	128747923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	-56.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	41.59	35.21	26.24	34.19	49.91	36.06	28.9	60.87	50.75	62.76	38.19	37.28
Merged-chr5-148399904-3	chr5	148399818	148400018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-14.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	74.7	71.69	76.44	75.21	70.77	87.17	50.16	71.41	112.9	79.33	133.66	62.97
Merged-chr2-144215466-3	chr2	144215365	144215565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26175.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	57.34	61.12	51.91	65.96	66.68	88.74	41.19	61.37	63.53	68.79	79.89	48.87
Merged-chr10-8747955-3	chr10	8747881	8748081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	138089.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	17.36	11.82	34.8	22.93	62.59	46.72	46.17	66.39	45.63	42.68	50.75	19.74
Merged-chr8-120715422-3	chr8	120715324	120715524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20934.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	34.32	33.7	58.76	57.92	47.87	49.86	45.18	83.83	46.22	47.7	58.29	35.4
Merged-chr12-85598757-1	chr12	85598657	85598857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-348.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	12.11	10.31	17.11	12.87	12.68	19.44	14.95	13.77	18.49	29.62	23.62	12.22
Merged-chr14-47276205-3	chr14	47276110	47276310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080843)	promoter-TSS (NM_080843)	647.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	23.42	19.12	29.66	24.13	33.14	27.59	27.24	34.82	32.26	21.09	28.14	19.74
Merged-chr4-136185567-3	chr4	136185471	136185671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177733, intron 5 of 6)	intron (NM_177733, intron 5 of 6)	4789.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	26.65	17.36	24.53	28.15	22.5	32.93	11.63	20.86	32.06	31.13	36.18	16.29
Merged-chr6-113697029-3	chr6	113696933	113697133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-17.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	245.91	236.94	209.93	244.14	239.73	272.18	212.59	245.55	286.38	378.59	412.04	173.86
Merged-chr11-5790120-3	chr11	5790027	5790227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146309, intron 1 of 12)	L2b|LINE|L2	1644.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	19.38	11.82	43.93	21.32	29.86	24.15	18.93	33.28	20.06	20.08	31.66	18.8
Merged-chr7-101385533-3	chr7	101385431	101385631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	5.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	21.8	27.92	38.79	27.35	46.23	76.83	33.55	28.68	40.32	34.14	51.76	23.18
Merged-chr3-95315190-3	chr3	95315092	95315292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029789)	promoter-TSS (NM_029789)	2.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	83.18	49.55	65.6	74.0	103.09	72.75	46.84	95.33	84.18	83.35	116.07	59.52
Merged-chr8-111243783-3	chr8	111243674	111243874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	15428.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	20.19	21.13	47.92	32.98	37.64	29.16	32.55	25.77	35.4	22.59	29.65	25.06
Merged-chr1-91955074-3	chr1	91954963	91955163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 22 of 26)	intron (NM_207225, intron 22 of 26)	153602.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	21.8	31.19	25.67	36.6	22.09	23.2	24.58	40.91	42.48	30.13	32.16	26.63
Merged-chr2-157513802-3	chr2	157513696	157513896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46282.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	24.63	25.66	47.92	26.14	37.23	48.29	30.23	41.94	52.71	46.19	68.34	33.21
Merged-chr19-46648778-3	chr19	46648686	46648886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24214.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	84.39	75.46	83.86	82.45	76.5	80.59	98.32	59.02	100.9	94.4	84.42	54.2
Merged-chrX-164419642-3	chrX	164419546	164419746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011081)	promoter-TSS (NM_011081)	-134.0	NR_152315	18700.0	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	183.32	190.91	223.62	179.78	204.55	257.76	173.06	222.56	218.91	301.77	323.1	140.03
Merged-chr12-85497503-3	chr12	85497405	85497605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23615.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	40.78	34.21	39.36	35.8	36.41	58.95	34.21	44.36	53.3	38.66	49.75	29.76
Merged-chr4-135416601-3	chr4	135416488	135416688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030481)	promoter-TSS (NR_030481)	45.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	73.89	70.43	106.1	73.2	70.77	91.25	65.44	83.27	65.5	49.21	69.85	58.27
Merged-chr12-35462811-3	chr12	35462731	35462931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72158.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	39.17	28.93	70.17	53.09	46.64	40.14	51.82	62.44	46.42	52.22	56.78	31.33
Merged-chr5-151368611-3	chr5	151368523	151368723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-52.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	292.35	299.82	290.36	254.19	327.28	347.13	227.2	298.77	372.33	416.75	496.45	253.12
Merged-chr4-138913990-3	chr4	138913877	138914077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028453)	promoter-TSS (NM_028453)	-30.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	62.18	70.43	82.15	62.74	43.36	43.27	21.59	37.57	116.24	114.48	112.56	72.68
Merged-chr4-63840638-3	chr4	63840555	63840755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	20629.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	33.11	40.5	43.35	43.44	33.55	33.24	33.22	53.41	33.24	43.18	45.73	33.52
Merged-chr14-66257827-3	chr14	66257747	66257947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	23205.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	43.61	31.19	27.38	40.22	63.82	45.78	37.2	50.33	54.68	73.31	79.39	34.46
Merged-chr14-77546733-3	chr14	77546633	77546833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-39865.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	21.4	22.64	26.24	31.37	20.05	17.25	12.95	22.71	18.88	23.6	36.18	21.93
Merged-chr6-43666213-3	chr6	43666102	43666302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311111)	promoter-TSS (NM_001311111)	76.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	159.1	175.82	179.69	242.12	202.92	227.65	217.9	276.7	254.51	267.62	324.1	163.53
Merged-chr12-30584459-3	chr12	30584361	30584561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172049)	promoter-TSS (NM_172049)	18.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	70.26	71.18	95.84	84.46	95.32	100.97	94.34	95.1	71.2	87.37	86.93	60.46
Merged-chr16-49987169-3	chr16	49987058	49987258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	6698.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	25.44	19.87	40.5	34.19	42.55	23.52	43.18	64.99	35.99	23.1	50.25	18.17
Merged-chr5-146845066-3	chr5	146844975	146845175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	4.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	49.67	36.97	33.09	67.17	42.55	40.76	54.48	74.89	83.79	97.91	117.58	58.89
Merged-chr2-38926737-3	chr2	38926626	38926826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-265.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	42.4	26.41	35.94	30.16	48.27	60.21	34.88	35.1	92.25	76.32	117.58	37.91
Merged-chr15-95793066-3	chr15	95792985	95793185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	2242.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	20.19	24.65	13.12	23.33	29.46	27.91	25.24	18.31	33.83	32.13	36.18	23.49
Merged-chr3-89911383-3	chr3	89911235	89911435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	1861.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	140.12	148.65	186.54	185.82	173.05	190.03	147.82	159.48	140.24	141.59	181.4	106.2
Merged-chr2-118513123-3	chr2	118513033	118513233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31454.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	54.92	50.31	54.76	38.61	54.0	87.8	41.19	42.65	81.82	87.37	73.86	50.75
Merged-chr19-3852479-3	chr19	3852331	3852531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271496, intron 1 of 11)	CpG	658.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	18.98	21.63	14.83	16.89	17.18	21.95	12.62	16.12	29.11	22.09	9.55	19.74
Merged-chr12-17450717-1	chr12	17450617	17450817	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-94156.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.85	0.5	5.7	5.23	3.27	5.02	10.3	10.18	3.93	4.02	5.02	1.88
Merged-chr12-40381383-3	chr12	40381288	40381488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	64402.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	38.36	62.38	51.34	25.34	33.55	61.15	28.57	18.17	50.94	44.69	32.66	15.98
Merged-chr16-91847715-3	chr16	91847618	91847818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	83912.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	19.38	13.33	53.62	30.97	51.96	39.82	76.4	97.32	36.19	31.13	95.47	45.74
Merged-chr14-51883742-3	chr14	51883653	51883853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1089.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	60.57	67.41	53.05	64.75	69.55	63.34	28.57	34.85	69.63	74.31	86.93	62.34
Merged-chr11-121083108-3	chr11	121083002	121083202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1963.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	39.98	30.43	42.78	45.85	20.86	21.95	17.94	23.66	29.11	22.09	18.09	18.17
Merged-chr6-83456647-3	chr6	83456558	83456758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347313)	promoter-TSS (NM_001347313)	-266.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	75.11	98.6	75.3	45.05	78.96	111.32	53.15	47.44	114.87	126.53	85.92	48.87
Merged-chr16-33624926-3	chr16	33624820	33625020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134251, exon 9 of 13)	exon (NM_134251, exon 9 of 13)	-59546.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	31.5	34.46	29.66	46.66	20.05	20.38	10.3	28.29	19.67	25.61	47.74	19.42
Merged-chr6-115675914-3	chr6	115675780	115675980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	8.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	23.82	13.83	18.83	13.27	21.27	39.82	23.92	20.05	31.27	17.07	41.2	12.22
Merged-chr8-39644738-3	chr8	39644636	39644836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2058.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	38.36	48.8	34.8	54.3	55.64	61.15	27.9	67.51	50.16	57.74	30.65	17.86
Merged-chr4-83266575-3	chr4	83266488	83266688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	57601.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	30.28	30.18	35.94	31.77	41.32	37.63	26.24	37.85	43.07	31.13	38.69	25.06
Merged-chr11-72607191-3	chr11	72607070	72607270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-91.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	121.14	136.83	191.67	125.08	172.23	216.37	122.24	136.29	192.36	169.21	235.16	110.58
Merged-chr7-19676010-3	chr7	19675908	19676108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001309799, intron 1 of 3)	intron (NM_001309799, intron 1 of 3)	1933.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	33.11	30.43	27.95	41.83	65.05	56.13	38.2	52.49	59.6	43.68	93.46	32.58
Merged-chr5-32746437-3	chr5	32746342	32746542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-100.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	160.71	137.08	175.13	160.88	179.6	208.21	157.78	181.94	177.81	193.81	281.89	94.29
Merged-chr13-3538619-3	chr13	3538512	3538712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	537.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	30.69	24.65	30.23	38.21	36.82	22.26	37.54	30.11	28.91	31.13	34.17	31.64
Merged-chr1-59186532-1	chr1	59186432	59186632	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159948, intron 15 of 33)	intron (NM_001159948, intron 15 of 33)	-23143.0	NM_001164682	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.4	0.0	0.0	0.0	30.27	23.52	21.26	46.49	0.0	0.0	2.51	0.63
Merged-chr2-167944939-1	chr2	167944839	167945039	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12612.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.85	0.75	3.99	8.85	4.09	5.02	9.3	15.48	6.49	2.01	1.51	6.58
Merged-chr19-6942503-3	chr19	6942405	6942605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	-55.0	NM_001177361	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	75.51	76.72	87.85	76.42	81.41	83.41	67.76	78.25	85.36	90.38	108.54	55.76
Merged-chr8-61928128-3	chr8	61928051	61928251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293783)	promoter-TSS (NM_001293783)	64.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	27.86	46.78	26.24	39.82	33.14	36.37	17.27	26.72	37.37	41.67	41.2	19.11
Merged-chrX-21568184-3	chrX	21568083	21568283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	83559.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	33.11	18.11	23.39	19.71	31.09	30.73	18.93	33.67	32.65	35.15	40.7	22.56
Merged-chr13-43785199-3	chr13	43785121	43785321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289915, exon 1 of 5)	exon (NM_001289915, exon 1 of 5)	109.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	242.28	237.19	285.23	173.35	227.87	250.23	179.04	176.24	254.71	341.43	335.16	165.09
Merged-chr12-34142964-3	chr12	34142862	34143062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	185291.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	27.05	29.68	37.65	42.63	38.86	39.51	24.91	33.87	32.45	23.6	31.66	19.11
Merged-chr1-105981469-3	chr1	105981370	105981570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	8812.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	67.03	65.9	78.72	68.78	93.28	95.01	52.82	92.3	115.06	106.95	141.7	74.24
Merged-chr17-12318800-3	chr17	12318711	12318911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	-15.0	NM_001357722	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	79.55	56.34	50.77	77.62	64.64	84.98	62.45	108.93	99.33	107.95	124.62	76.75
Merged-chr17-11644810-1	chr17	11644710	11644910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	238379.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	32.71	30.69	61.04	58.32	1.23	0.0	0.0	0.31	0.59	0.0	0.5	0.94
Merged-chr7-45704909-3	chr7	45704818	45705018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-329.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	150.21	170.03	146.04	184.61	169.78	225.46	156.12	162.37	240.35	236.99	244.71	133.76
Merged-chr17-56036716-3	chr17	56036629	56036829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-70.0	NM_001357649	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	156.67	145.38	108.39	107.39	144.82	198.81	113.6	123.73	211.83	251.55	214.56	111.21
Merged-chr17-70987574-3	chr17	70987473	70987673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	PB1D10|SINE|Alu	2943.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	32.3	23.9	40.5	12.47	32.32	50.17	28.23	31.35	43.47	44.69	49.75	19.74
Merged-chr11-50378483-3	chr11	50378394	50378594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347487, intron 2 of 12)	CpG-1904	775.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	64.2	70.43	50.2	39.42	58.91	76.51	39.2	46.82	79.07	78.83	55.78	39.47
Merged-chr9-121317083-3	chr9	121316964	121317164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	19562.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	49.67	38.48	53.62	56.71	47.05	43.9	46.17	53.05	71.59	60.25	57.28	47.3
Merged-chr6-39206614-2	chr6	39206518	39206718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033430, exon 1 of 20)	exon (NM_001033430, exon 1 of 20)	155.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	14.54	20.63	17.11	22.12	14.73	12.23	19.93	19.6	37.57	27.62	33.16	14.41
Merged-chr3-96576858-3	chr3	96576718	96576918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10017.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	69.05	67.91	82.15	85.67	90.41	104.42	78.06	87.81	82.22	116.49	108.54	61.71
Merged-chr10-84402022-3	chr10	84401934	84402134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38437.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	94.08	80.74	111.24	109.0	47.46	69.3	61.78	65.3	62.15	70.29	86.43	51.06
Merged-chr19-34526402-3	chr19	34526334	34526534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1040.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	25.04	27.17	11.98	28.96	38.05	28.54	27.57	31.04	43.66	28.62	37.18	29.76
Merged-chr5-102063299-3	chr5	102063188	102063388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	6633.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	24.63	16.85	53.62	45.85	19.23	21.32	41.85	41.86	36.78	35.15	39.19	39.16
Merged-chr12-103532272-3	chr12	103532198	103532398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028980)	promoter-TSS (NM_028980)	-267.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	68.24	44.52	77.01	74.41	66.27	76.51	69.09	81.98	81.43	80.84	103.51	41.66
Merged-chr8-46000021-3	chr8	45999930	46000130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039562)	promoter-TSS (NM_001039562)	-180.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	123.56	131.8	159.73	170.93	172.23	187.52	173.39	206.94	214.19	187.79	289.93	123.11
Merged-chr2-77281212-3	chr2	77281139	77281339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-647.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	83.18	70.93	69.6	60.73	75.28	110.06	64.11	88.65	123.91	103.43	128.64	75.18
Merged-chr10-12856118-1	chr10	12856018	12856218	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	MLTR11A|LTR|ERVK	5617.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.04	2.52	2.28	10.05	2.45	4.08	7.31	12.59	1.18	1.51	1.51	1.57
Merged-chr19-5038858-3	chr19	5038770	5038970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	44.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	30.69	19.37	23.39	23.33	26.59	39.82	21.59	18.87	37.76	25.11	44.22	26.31
Merged-chr18-67478719-3	chr18	67478606	67478806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144867, intron 6 of 6)	intron (NM_144867, intron 6 of 6)	13857.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	24.63	26.41	24.53	30.97	27.0	30.42	23.25	31.37	29.7	25.11	65.32	22.56
Merged-chr1-138940602-2	chr1	138940502	138940702	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA8|LINE|L1	-23107.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	51.14	124.17	52.82	70.29	109.75	112.97	60.3	42.29
Merged-chr13-42372417-3	chr13	42372317	42372517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	70941.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	21.0	26.66	30.8	18.1	28.23	34.18	26.24	21.36	18.49	25.61	33.67	15.66
Merged-chr1-34858868-3	chr1	34858745	34858945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	8856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	35.94	32.95	59.9	34.19	59.73	33.87	36.21	62.22	69.23	51.21	49.75	41.04
Merged-chr19-3912880-3	chr19	3912785	3912985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-111.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	181.71	154.44	188.82	199.09	186.96	261.83	167.75	169.94	203.18	177.24	243.2	105.88
Merged-chr13-13666308-3	chr13	13666223	13666423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75914.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	18.98	19.37	25.1	20.91	33.14	35.43	40.52	25.12	34.62	20.08	29.14	17.54
Merged-chr2-128967261-3	chr2	128967150	128967350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-152.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	91.66	93.07	80.43	84.06	126.82	111.63	58.13	83.72	119.59	116.49	106.53	59.52
Merged-chr11-104382084-3	chr11	104381994	104382194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 3 of 14)	B1_Mur2|SINE|Alu	60197.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	26.65	22.39	30.8	27.75	34.36	40.45	12.62	27.59	36.58	36.15	25.63	19.74
Merged-chr15-25858717-3	chr15	25858625	25858825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	15427.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	16.96	20.12	22.82	18.1	23.32	28.22	19.27	46.82	36.58	30.13	39.19	26.0
Merged-chr6-17598706-3	chr6	17598606	17598806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38304.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	33.11	37.73	25.1	27.35	41.32	45.47	25.58	24.95	64.91	44.19	82.41	21.93
Merged-chr13-67128633-3	chr13	67128548	67128748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172392, intron 1 of 3)	intron (NM_172392, intron 1 of 3)	420.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	12.11	9.06	5.7	18.5	18.0	21.64	26.57	19.54	26.36	33.14	46.73	26.0
Merged-chr18-36286990-3	chr18	36286886	36287086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5824.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	75.91	67.16	69.6	55.91	85.91	80.59	47.17	77.3	75.53	65.78	88.94	43.86
Merged-chr18-60843943-3	chr18	60843843	60844043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	5021.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	38.76	56.09	39.93	51.48	54.0	55.5	37.87	42.87	76.12	55.23	93.96	37.91
Merged-chr8-84067325-3	chr8	84067223	84067423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	CpG	487.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	126.79	101.37	74.73	105.38	122.73	148.63	74.07	86.89	140.63	155.65	151.75	95.23
Merged-chr2-127143466-3	chr2	127143385	127143585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163527)	promoter-TSS (NM_001163527)	-28.0	NM_001355634	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	31.5	15.34	30.23	27.75	33.55	27.59	12.95	36.76	30.29	24.1	30.15	14.72
Merged-chr1-170997905-3	chr1	170997796	170997996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21030.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	39.17	31.69	35.37	33.78	28.64	16.31	24.58	31.79	41.11	40.67	27.13	24.12
Merged-chr11-5955745-3	chr11	5955663	5955863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	5.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	78.34	65.65	67.88	65.96	89.18	68.67	60.79	77.61	91.46	75.32	127.13	52.94
Merged-chr10-67579985-3	chr10	67579854	67580054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7995.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	35.53	25.91	36.51	38.61	42.55	34.49	37.54	55.82	48.78	49.21	57.79	31.01
Merged-chr2-134644187-3	chr2	134644079	134644279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-58.0	NM_029148	52837.0	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	145.77	139.85	179.69	191.45	198.82	218.25	165.42	252.53	204.75	201.85	273.85	143.16
Merged-chr18-42275284-3	chr18	42275190	42275390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033452)	promoter-TSS (NR_033452)	-63.0	NM_172626	225432.0	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	163.94	127.02	175.13	189.03	213.96	200.69	112.27	197.75	204.16	186.78	274.86	119.35
Merged-chr4-133874717-3	chr4	133874619	133874819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	12.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	29.48	33.2	42.78	33.38	50.32	44.53	19.6	30.93	34.62	26.61	25.63	24.43
Merged-chr11-70452249-3	chr11	70452156	70452356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025397, exon 2 of 3)	exon (NM_025397, exon 2 of 3)	325.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	130.02	117.72	62.75	81.65	122.73	147.38	50.82	86.33	93.43	95.4	113.56	63.28
Merged-chr9-108079318-3	chr9	108079220	108079420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032543)	promoter-TSS (NM_032543)	-19.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	33.11	20.88	18.25	14.48	23.73	42.33	12.95	19.65	33.24	33.14	33.16	25.06
Merged-chr17-27025509-3	chr17	27025419	27025619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001251881, intron 2 of 6)	intron (NM_001251881, intron 2 of 6)	3108.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	83.18	51.31	57.62	41.83	63.0	82.47	57.47	72.65	74.94	76.32	58.79	53.57
Merged-chr18-61211624-3	chr18	61211516	61211716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007885)	promoter-TSS (NM_007885)	-20.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	143.75	129.29	162.58	121.06	133.37	166.19	100.32	131.05	188.62	159.67	196.47	123.74
Merged-chr4-126438059-3	chr4	126437983	126438183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8541.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	48.86	35.97	52.48	29.36	49.91	68.99	22.92	29.55	58.81	51.21	41.2	19.11
Merged-chr12-70937817-3	chr12	70937693	70937893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019785)	promoter-TSS (NM_019785)	-64.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	65.41	61.12	37.08	58.72	67.09	68.67	49.16	55.23	91.46	73.81	83.91	48.87
Merged-chr3-104794690-3	chr3	104794589	104794789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291859)	TTS (NM_001291859)	5655.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	61.78	33.96	49.06	57.92	90.0	95.01	80.05	129.39	50.35	48.7	83.41	31.95
Merged-chr7-49246080-3	chr7	49245998	49246198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-91.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	116.7	92.56	114.66	111.01	158.73	120.1	112.61	168.65	143.19	134.56	205.52	98.68
Merged-chr12-79352329-2	chr12	79352246	79352446	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54995.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.63	5.79	11.41	5.63	11.86	12.23	12.62	15.28	23.6	24.6	28.64	21.3
Merged-chr2-72979116-4	chr2	72978971	72979171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	210.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	45.63	37.73	49.63	48.26	42.55	50.49	56.14	44.16	89.49	72.81	95.97	42.6
Merged-chr7-88250593-3	chr7	88250489	88250689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-27496.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	54.92	63.64	55.9	60.33	44.18	60.21	70.42	38.52	71.99	51.72	82.41	51.06
Merged-chr5-31240848-3	chr5	31240754	31240954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347326)	promoter-TSS (NM_001347326)	-29.0	NM_001347326	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	71.07	83.26	96.98	81.65	86.32	106.3	67.43	83.64	108.77	121.01	148.73	76.12
Merged-chr9-57765966-3	chr9	57765866	57766066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007713)	promoter-TSS (NM_007713)	-106.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	60.57	62.63	46.21	45.45	45.41	80.27	61.78	58.01	93.23	95.9	90.45	56.39
Merged-chr7-109752681-2	chr7	109752587	109752787	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-424.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	14.94	15.34	14.83	14.08	22.09	20.38	16.94	15.95	18.69	15.06	22.11	19.42
Merged-chr7-80775013-3	chr7	80774913	80775113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28318.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	32.71	29.68	35.94	25.74	30.27	42.65	13.95	23.44	49.76	47.7	44.22	44.48
Merged-chr4-121028881-3	chr4	121028782	121028982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10684.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	29.07	42.76	28.52	20.91	42.55	39.2	12.62	21.28	44.06	54.73	39.19	20.05
Merged-chr12-112994356-1	chr12	112994256	112994456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028193, intron 1 of 17)	intron (NM_028193, intron 1 of 17)	6265.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	55.72	38.48	60.47	60.73	0.0	0.63	0.33	0.5	0.79	0.5	0.0	0.63
Merged-chr8-128680795-3	chr8	128680724	128680924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4830.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	88.84	65.4	77.01	49.47	51.96	105.05	58.79	57.53	110.74	90.88	58.29	42.92
Merged-chr19-42129093-3	chr19	42128955	42129155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-62.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	117.91	93.57	74.73	85.67	98.59	106.61	74.74	94.4	107.39	107.45	108.03	54.2
Merged-chr5-124579095-3	chr5	124579019	124579219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181410)	promoter-TSS (NM_181410)	12.0	NM_145371	209354.0	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	54.92	56.34	54.19	55.1	68.32	57.38	30.23	43.99	56.45	74.31	64.82	45.42
Merged-chr3-95659518-3	chr3	95659380	95659580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008562, exon 1 of 3)	exon (NM_008562, exon 1 of 3)	759.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	140.52	135.57	57.05	53.09	99.0	209.47	74.07	52.79	134.93	152.64	128.13	74.56
Merged-chr3-38143298-3	chr3	38143185	38143385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64834.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	26.25	26.41	35.94	43.84	47.05	30.1	40.86	58.88	43.86	24.6	65.32	30.39
Merged-chrX-48314846-3	chrX	48314743	48314943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-26515.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	42.4	44.02	31.95	32.98	32.32	55.19	51.15	48.22	44.65	42.18	54.27	23.81
Merged-chr1-172376443-3	chr1	172376326	172376526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-105.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	177.27	183.36	216.2	175.36	191.46	228.91	165.75	162.73	253.33	244.53	263.8	153.5
Merged-chr18-12178426-1	chr18	12178326	12178526	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029623, intron 5 of 19)	intron (NM_029623, intron 5 of 19)	9696.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	4.04	1.01	2.85	1.21	2.45	10.66	1.99	10.35	3.54	4.02	6.03	4.39
Merged-chr4-3649210-3	chr4	3649109	3649309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7297.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	62.59	40.24	80.43	111.81	76.09	84.35	64.11	104.72	53.3	36.15	124.62	63.91
Merged-chr1-161497500-3	chr1	161497405	161497605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 1 of 2)	MIR|SINE|MIR	2848.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	34.32	29.18	27.95	51.08	38.05	48.6	34.55	47.83	49.57	47.7	48.24	39.47
Merged-chr6-5110589-3	chr6	5110489	5110689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83357.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	20.59	29.18	31.38	29.76	31.91	47.35	15.61	38.47	39.34	45.69	54.27	22.56
Merged-chr5-65956079-3	chr5	65956060	65956260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10964.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	32.3	25.91	18.25	12.87	25.77	48.92	22.26	21.45	41.89	36.15	31.66	27.88
Merged-chr18-12972192-3	chr18	12972068	12972268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008378, exon 1 of 11)	5' UTR (NM_008378, exon 1 of 11)	245.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	45.63	51.81	37.08	37.0	54.41	75.57	40.86	43.96	76.31	79.83	72.36	58.27
Merged-chrX-13041909-3	chrX	13041794	13041994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038158)	promoter-TSS (NR_038158)	-121.0	NR_038158	70489.0	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	123.16	114.19	110.1	123.07	136.64	168.39	127.55	128.52	125.88	150.63	161.8	96.17
Merged-chr15-74709403-3	chr15	74709312	74709512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008415)	promoter-TSS (NM_008415)	-90.0	NM_008415	16469.0	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	27.86	25.4	18.25	25.74	20.05	32.3	40.86	31.07	13.96	25.61	24.12	13.16
Merged-chr1-125466789-3	chr1	125466638	125466838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31011.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	50.88	61.88	115.8	94.92	55.64	61.77	61.45	74.66	66.68	52.22	79.39	67.04
Merged-chr6-50110134-3	chr6	50110027	50110227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-114.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	33.11	32.7	30.8	35.39	42.96	42.33	29.23	40.04	51.34	40.17	52.26	24.75
Merged-chr12-76553195-3	chr12	76553079	76553279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-5254.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	52.09	53.83	78.15	60.33	65.46	55.5	67.76	70.29	43.47	52.72	59.29	38.85
Merged-chr13-67844306-3	chr13	67844217	67844417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11587.0	NM_001309373	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	29.48	26.91	23.39	44.24	30.68	43.59	18.6	34.79	72.38	78.83	90.45	34.15
Merged-chr8-104248528-3	chr8	104248426	104248626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021028)	promoter-TSS (NM_021028)	32.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	63.4	65.4	53.05	63.15	89.18	117.9	73.74	84.2	110.93	72.81	130.65	55.76
Merged-chr8-39006283-3	chr8	39006190	39006390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357305, intron 1 of 8)	CpG	445.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	25.04	17.1	19.97	34.19	46.64	21.64	30.89	39.56	69.82	67.78	91.95	36.03
Merged-chr11-51916244-3	chr11	51916154	51916354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51377.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	37.96	39.74	63.89	46.25	109.64	72.44	70.09	90.36	87.53	75.32	105.02	53.26
Merged-chr3-87357856-3	chr3	87357755	87357955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009690)	promoter-TSS (NM_009690)	-26.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	53.3	50.56	65.03	56.71	45.0	81.53	61.12	88.09	68.64	63.27	96.98	60.77
Merged-chr8-33652449-3	chr8	33652309	33652509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-829.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	21.0	21.88	27.95	19.71	27.0	28.22	46.5	28.51	56.65	44.69	70.85	34.77
Merged-chr2-158145599-3	chr2	158145499	158145699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	793.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	145.77	117.72	162.58	92.91	120.28	239.26	163.76	135.0	195.7	174.23	214.56	86.15
Merged-chr1-152810858-3	chr1	152810791	152810991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	10738.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	48.86	19.87	30.23	23.33	47.46	55.19	38.2	44.1	29.11	49.71	32.66	47.62
Merged-chr4-141952342-3	chr4	141952254	141952454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 12 of 31)	intron (NM_177868, intron 12 of 31)	-30638.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	100.95	136.58	187.11	158.47	164.46	207.59	125.89	142.32	164.43	211.39	230.14	134.08
Merged-chr11-3930231-3	chr11	3930139	3930339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1722.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	27.46	8.8	39.36	14.48	44.18	36.69	42.19	63.25	40.52	28.62	60.8	28.19
Merged-chrX-93877871-3	chrX	93877767	93877967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-45772.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	39.57	48.8	30.8	34.59	47.05	66.16	39.2	51.79	51.53	58.24	65.32	24.75
Merged-chr3-96905287-3	chr3	96905110	96905310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	88.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	13.33	11.82	18.83	18.9	18.0	20.38	21.92	14.22	20.26	18.58	20.6	21.62
Merged-chr10-121459267-3	chr10	121459184	121459384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16966.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	29.88	31.69	50.2	44.64	32.73	28.85	22.92	35.78	28.13	23.6	34.17	27.25
Merged-chr7-89337472-3	chr7	89337377	89337577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	MER5A1|DNA|hAT-Charlie	1310.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	61.78	49.05	40.5	21.72	53.18	87.8	38.53	43.12	76.51	67.78	100.5	20.99
Merged-chr9-118649646-3	chr9	118649543	118649743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	B4|SINE|B4	42934.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	22.21	14.09	41.64	45.45	54.41	46.1	85.7	106.57	45.04	31.63	85.92	25.37
Merged-chr3-61294990-3	chr3	61294869	61295069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69538.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	39.17	44.27	58.19	50.27	56.05	48.6	35.21	65.41	47.4	51.21	46.23	34.46
Merged-chr3-8667184-3	chr3	8667076	8667276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-138.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	128.0	120.48	116.37	148.01	99.82	159.92	128.55	183.03	168.37	160.67	236.67	108.7
Merged-chr15-84167758-3	chr15	84167659	84167859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-57.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	64.2	44.27	33.66	43.84	53.59	79.65	50.82	57.84	75.33	91.89	99.49	31.33
Merged-chr18-82783102-3	chr18	82782990	82783190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24051.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	35.13	24.15	45.07	23.73	21.68	42.33	19.27	18.87	38.35	31.63	41.71	19.42
Merged-chr10-34198295-3	chr10	34198229	34198429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	9222.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	54.11	46.53	75.3	80.84	54.0	58.95	37.2	90.73	55.07	47.2	69.85	41.04
Merged-chr10-82962839-3	chr10	82962720	82962920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie6|DNA|hAT-Charlie	-22677.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	22.21	21.38	55.33	30.57	54.0	65.85	70.75	77.78	33.24	42.18	63.31	33.21
Merged-chr3-139042685-3	chr3	139042585	139042785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	32516.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	105.79	80.24	72.45	39.42	67.5	112.89	60.79	57.42	105.82	68.29	87.93	28.82
Merged-chr3-9028118-3	chr3	9028028	9028228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23405.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.06	15.09	24.53	28.96	22.91	38.88	43.85	43.79	47.99	26.61	42.21	32.27
Merged-chr2-129058168-1	chr2	129058068	129058268	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7779.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0.0	0.0	0.0	0.0	27.82	59.27	30.23	24.56	0.59	0.0	1.51	0.0
Merged-chr11-32560214-3	chr11	32560124	32560324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	26958.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	22.61	20.63	23.39	28.15	31.91	26.03	31.22	50.89	25.57	7.03	14.07	11.9
Merged-chr4-58503227-3	chr4	58503119	58503319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-3816.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	18.17	26.91	24.53	14.88	24.55	32.61	19.6	14.1	70.41	48.2	38.19	28.82
Merged-chr5-142926537-3	chr5	142926444	142926644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19790.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	22.61	18.86	23.39	16.49	24.55	15.99	14.62	18.95	29.5	26.11	44.22	19.42
Merged-chr19-46501581-3	chr19	46501470	46501670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-78.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	29.48	48.54	33.09	56.71	46.64	41.71	59.46	34.96	40.32	69.79	50.75	38.22
Merged-chr1-156660853-1	chr1	156660753	156660953	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023141, intron 4 of 5)	ERVB7_1-LTR_MM|LTR|ERVK	13486.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.63	0.33	0.0	29.5	17.07	11.05	17.23
Merged-chr15-100461160-3	chr15	100461030	100461230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7881.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	22.21	32.45	22.25	26.55	29.05	35.12	24.58	27.14	60.78	44.19	76.88	29.76
Merged-chr4-134731596-3	chr4	134731500	134731700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27310.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	21.8	19.37	19.97	22.52	20.05	25.09	20.93	36.76	19.08	27.11	28.14	23.18
Merged-chr17-45585511-3	chr17	45585420	45585620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001199116, exon 13 of 13)	3' UTR (NM_001199116, exon 13 of 13)	6873.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	52.09	41.0	83.29	74.41	50.32	46.41	36.21	65.08	62.35	49.21	88.44	31.33
Merged-chr6-87536291-3	chr6	87536185	87536385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3026.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	22.61	12.32	22.25	26.95	21.27	26.34	18.6	31.65	18.49	19.08	30.15	29.76
Merged-chr6-116724659-3	chr6	116724558	116724758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7900.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	34.73	32.2	18.25	32.98	22.09	27.91	18.6	29.33	46.62	64.27	53.77	29.13
Merged-chr13-23752284-3	chr13	23752184	23752384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	-96.0	NM_178203	319150.0		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	23.42	17.86	25.67	16.89	26.59	16.62	16.28	20.38	27.34	24.1	43.21	21.93
Merged-chr8-84204192-3	chr8	84204104	84204304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4314.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	125.98	113.69	88.42	96.13	97.37	187.2	88.03	90.0	174.27	177.24	168.33	93.35
Merged-chr14-55386958-2	chr14	55386859	55387059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91799.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	41.99	23.9	42.78	52.69	44.59	24.46	34.21	40.96	2.56	2.51	3.01	2.19
Merged-chr8-68837874-1	chr8	68837774	68837974	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42681.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.0	1.26	0.0	0.0	1.23	0.0	0.0	0.22	24.0	28.12	33.67	16.29
Merged-chr2-71327972-3	chr2	71327887	71328087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	39567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	36.75	18.86	50.77	43.44	38.05	41.39	30.89	40.01	52.52	39.16	67.33	27.57
Merged-chr18-32837240-3	chr18	32837110	32837310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	-15.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	67.03	60.87	69.6	65.16	91.64	97.52	59.79	84.36	99.92	108.96	126.63	62.34
Merged-chr7-143052775-3	chr7	143052671	143052871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	21.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	79.55	56.09	41.07	52.29	57.68	90.0	39.86	42.95	85.76	93.39	93.46	53.88
Merged-chr1-118321807-3	chr1	118321732	118321932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-11.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	84.8	56.34	57.62	52.29	85.91	92.19	45.84	99.14	78.09	85.86	95.97	47.3
Merged-chr7-43349849-3	chr7	43349766	43349966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1475.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	65.01	58.1	61.61	74.81	74.05	55.19	60.79	29.61	62.55	48.7	98.49	42.6
Merged-chr7-106693151-3	chr7	106693054	106693254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_146452	258444.0	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	22.21	21.13	20.54	49.47	33.14	26.34	25.58	43.15	18.29	25.61	41.2	20.05
Merged-chrX-19160486-3	chrX	19160396	19160596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13525.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	25.04	35.97	20.54	7.24	31.09	33.24	19.27	15.98	39.14	35.15	22.11	4.7
Merged-chr1-151819414-3	chr1	151819284	151819484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	64010.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	35.94	60.12	98.12	74.81	63.41	75.57	56.14	89.27	74.15	50.71	77.88	54.82
Merged-chr4-129542769-3	chr4	129542675	129542875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-129.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	88.84	68.42	106.1	70.38	103.09	107.87	64.44	87.36	104.64	90.38	123.11	67.67
Merged-chr13-12565764-3	chr13	12565666	12565866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-117.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	251.16	223.61	268.69	271.08	294.96	378.48	255.44	348.95	344.6	307.79	413.04	208.95
Merged-chr11-75630895-3	chr11	75630796	75630996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-124.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	183.73	180.35	149.46	186.22	153.0	237.37	151.14	143.83	234.06	212.39	294.45	122.49
Merged-chrX-38473681-3	chrX	38473589	38473789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17229.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	33.92	27.42	41.07	32.18	50.32	50.17	42.19	40.04	53.3	46.7	50.25	30.7
Merged-chr19-4097263-3	chr19	4097147	4097347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026373)	promoter-TSS (NM_026373)	-104.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	174.44	183.62	210.5	136.75	201.69	207.9	158.78	166.8	259.43	220.42	241.19	116.54
Merged-chr18-38350167-3	chr18	38350080	38350280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11187.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	211.99	180.6	220.77	242.93	235.64	259.01	186.68	236.44	246.65	281.68	307.52	145.04
Merged-chr10-34207345-3	chr10	34207244	34207444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172508, exon 1 of 6)	5' UTR (NM_172508, exon 1 of 6)	207.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	30.28	50.81	45.64	51.88	48.68	62.4	57.13	31.99	41.7	62.26	56.28	26.0
Merged-chr7-30167256-1	chr7	30167156	30167356	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011980, intron 1 of 1)	intron (NM_011980, intron 1 of 1)	2485.0	NM_011980	26465.0	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	0.4	1.01	0.0	0.0	0.0	0.0	0.66	0.0	20.26	18.58	26.13	25.06
Merged-chr16-91825980-3	chr16	91825883	91826083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	96612.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	33.11	32.7	47.92	61.54	38.46	49.23	50.16	82.85	53.3	32.64	65.83	36.03
Merged-chr13-69383453-1	chr13	69383353	69383553	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150411.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.4	1.51	0.0	1.61	2.45	4.08	0.0	2.89	26.16	17.07	24.12	15.98
Merged-chr3-108911726-3	chr3	108911606	108911806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356292)	promoter-TSS (NM_001356292)	23.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	45.63	72.44	59.9	67.57	63.41	76.83	74.07	58.15	104.83	98.41	143.21	63.91
Merged-chr6-42424719-3	chr6	42424616	42424816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9819.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	36.75	24.65	40.5	28.96	33.14	30.73	27.57	51.84	28.91	23.6	48.24	18.48
Merged-chr3-27984102-3	chr3	27983989	27984189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008875)	promoter-TSS (NM_008875)	-82.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	33.11	22.39	29.66	37.0	30.68	23.83	21.26	42.98	41.89	23.1	48.74	17.86
Merged-chr10-52418114-3	chr10	52417991	52418191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030250, exon 1 of 5)	exon (NM_030250, exon 1 of 5)	544.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	19.38	18.61	25.67	16.89	27.0	26.03	46.17	26.24	39.93	27.11	49.75	40.1
Merged-chr1-67386145-2	chr1	67386051	67386251	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	263124.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	3.63	0.5	0.0	2.82	29.05	28.85	29.23	37.99	43.47	36.65	46.73	20.36
Merged-chr8-105827341-3	chr8	105827273	105827473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-23.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	157.88	138.84	172.85	150.02	157.5	234.55	140.84	169.18	222.26	243.02	235.16	137.21
Merged-chr11-74832282-3	chr11	74832161	74832361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	1337.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	203.51	224.61	181.98	215.58	226.64	309.81	210.26	189.48	286.97	289.71	347.72	214.9
Merged-chr9-22119661-3	chr9	22119555	22119755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2460.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	85.2	62.38	65.03	72.4	87.55	99.72	83.37	93.9	79.86	78.33	88.94	48.56
Merged-chr10-21295953-3	chr10	21295873	21296073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145209)	promoter-TSS (NM_001145209)	-6.0	NM_001042593	56422.0	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	69.45	62.63	84.43	70.38	71.18	100.97	49.83	46.26	68.64	70.8	76.38	52.94
Merged-chr16-15887246-3	chr16	15887168	15887368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-18.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	99.33	107.91	91.84	114.63	72.41	80.27	69.42	85.79	76.51	90.88	126.12	70.48
Merged-chr5-149267109-3	chr5	149267006	149267206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2102.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	50.07	39.24	75.87	69.98	48.68	54.88	48.16	59.55	69.82	64.77	63.31	59.52
Merged-chr7-66689762-3	chr7	66689654	66689854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003961)	promoter-TSS (NR_003961)	-135.0	NM_152815	72635.0	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	166.36	187.64	172.28	195.87	218.05	256.5	195.32	210.2	266.91	272.64	330.63	151.31
Merged-chr1-74661663-3	chr1	74661571	74661771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014974)	promoter-TSS (NM_001014974)	-83.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	79.55	70.43	58.76	81.65	85.09	106.93	92.01	113.33	113.88	103.94	140.7	64.22
Merged-chr6-120531310-3	chr6	120531203	120531403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-4.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	49.26	27.42	51.34	36.6	49.09	50.17	49.83	39.0	40.91	49.21	91.45	49.5
Merged-chr19-37511097-3	chr19	37510992	37511192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39326.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	22.61	33.7	48.49	24.13	32.73	30.42	14.28	17.55	26.75	19.58	39.7	6.89
Merged-chr3-96197221-3	chr3	96197121	96197321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026975, exon 2 of 2)	exon (NM_026975, exon 2 of 2)	365.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	28.67	22.89	25.1	19.31	31.91	36.37	18.93	22.77	41.7	38.16	39.7	28.19
Merged-chr2-144527529-3	chr2	144527421	144527621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029763)	promoter-TSS (NM_029763)	-107.0	NM_001360362	241688.0	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	94.89	99.1	99.83	121.06	97.37	106.61	120.91	123.76	127.45	122.51	147.23	88.03
Merged-chr11-93995834-3	chr11	93995716	93995916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-275.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	102.16	109.16	74.16	82.45	61.37	128.88	58.46	70.82	141.62	138.58	189.94	67.67
Merged-chr11-3137963-1	chr11	3137863	3138063	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	Lx9|LINE|L1	13942.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	13.73	15.59	5.7	8.04	24.14	22.89	17.94	19.15	0.59	0.0	0.0	1.57
Merged-chr10-79908729-3	chr10	79908635	79908835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198107, intron 1 of 14)	CpG	203.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	66.63	80.74	60.47	78.83	79.37	86.23	85.04	49.99	74.35	93.89	101.5	60.77
Merged-chr10-40257650-3	chr10	40257562	40257762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	50.0	NM_001359491	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	44.82	32.2	41.07	47.46	39.68	50.17	36.21	51.31	61.96	37.16	55.27	36.97
Merged-chr18-25548587-3	chr18	25548461	25548661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	131187.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	15.34	21.63	17.11	20.91	24.55	25.09	24.58	32.19	30.88	31.13	33.16	22.56
Merged-chr3-52000273-3	chr3	52000167	52000367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104739.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	35.94	44.02	49.06	46.25	34.77	72.44	31.89	49.93	47.8	40.17	65.32	26.94
Merged-chr13-34276853-3	chr13	34276779	34276979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	68303.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	27.86	17.36	33.09	34.99	25.36	16.31	36.87	30.22	18.29	25.61	29.14	22.87
Merged-chr12-80790434-3	chr12	80790322	80790522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178682)	promoter-TSS (NM_178682)	-110.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	147.79	131.3	152.31	109.0	144.82	193.79	102.64	124.57	184.49	189.29	198.48	108.39
Merged-chr4-155735003-1	chr4	155734903	155735103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001101506, exon 1 of 4)	5' UTR (NM_001101506, exon 1 of 4)	199.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	27.46	20.88	25.1	34.59	31.91	22.58	18.93	24.67	28.32	35.15	32.66	28.51
Merged-chr1-88277620-3	chr1	88277525	88277725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-46.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	380.38	341.83	377.64	420.3	559.65	532.45	434.48	557.78	659.5	594.49	880.35	359.32
Merged-chr14-67234556-3	chr14	67234449	67234649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360202)	promoter-TSS (NM_001360202)	-95.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	21.0	15.09	21.11	23.33	27.41	29.48	37.2	43.35	40.91	29.62	36.68	26.31
Merged-chr17-23599220-3	chr17	23599134	23599334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011747, exon 1 of 6)	5' UTR (NM_011747, exon 1 of 6)	253.0	NM_011747	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	66.22	53.83	51.34	68.37	73.64	69.61	56.47	87.31	56.25	56.24	77.88	26.31
Merged-chr1-105922050-3	chr1	105921944	105922144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	68238.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	34.32	24.65	39.36	32.98	32.73	42.33	41.85	52.96	48.98	45.69	55.78	32.27
Merged-chr11-58183776-3	chr11	58183666	58183866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135115)	promoter-TSS (NM_001135115)	-77.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	21.8	21.13	46.21	40.22	26.18	26.34	14.95	26.16	39.53	34.65	35.68	20.99
Merged-chr12-73287809-3	chr12	73287705	73287905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037717, intron 1 of 15)	intron (NM_001037717, intron 1 of 15)	957.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	44.82	29.18	44.5	36.6	54.41	49.23	38.53	57.36	63.53	70.29	70.35	35.09
Merged-chr4-55741541-3	chr4	55741434	55741634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-209059.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	52.49	53.83	86.71	116.64	61.77	37.63	57.13	77.86	71.0	41.17	81.4	32.89
Merged-chr17-46341427-3	chr17	46341339	46341539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13416.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	82.37	78.98	130.63	80.84	91.23	101.6	87.03	128.3	93.62	85.36	111.05	76.44
Merged-chr13-101768278-3	chr13	101768177	101768377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-60.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	149.4	136.33	137.48	133.53	128.46	114.77	150.14	146.64	198.06	151.13	202.5	127.81
Merged-chr2-5845141-3	chr2	5845056	5845256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356501)	promoter-TSS (NM_001356501)	21.0	NM_001356502	98828.0	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	26.65	34.96	22.82	28.96	20.86	31.04	19.93	15.7	26.95	30.63	24.12	16.92
Merged-chr11-80172037-3	chr11	80171923	80172123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11849.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	68.65	38.74	81.58	74.41	95.32	88.43	70.75	66.59	97.56	73.81	70.85	43.54
Merged-chr5-142629484-3	chr5	142629396	142629596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-88.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	95.7	92.06	71.88	67.57	92.05	85.92	52.15	63.59	118.01	98.91	106.53	56.7
Merged-chr7-19085643-4	chr7	19085464	19085664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	-1264.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	15.75	16.1	18.25	24.13	15.55	11.29	35.21	21.7	27.54	21.09	34.17	36.34
Merged-chr8-84661703-3	chr8	84661606	84661806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010499, exon 1 of 1)	3' UTR (NM_010499, exon 1 of 1)	1146.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	154.65	127.52	147.18	108.59	112.09	148.01	87.03	123.93	147.52	147.12	189.94	89.28
Merged-chr3-137854077-3	chr3	137853960	137854160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10427.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	34.32	14.34	38.22	18.9	27.0	16.93	19.27	17.5	45.43	20.08	50.75	22.24
Merged-chr4-40700453-3	chr4	40700332	40700532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	2484.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	45.63	45.28	35.37	44.64	60.55	67.73	43.85	54.31	69.63	72.81	86.43	48.24
Merged-chr1-180401979-3	chr1	180401875	180402075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-71426.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	66.63	58.35	68.45	69.98	77.32	96.58	45.84	86.19	109.16	110.97	169.34	68.61
Merged-chr10-95372077-3	chr10	95371973	95372173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35797.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	58.55	46.53	33.66	40.62	45.82	53.62	40.19	31.21	98.74	66.78	56.28	41.04
Merged-chr11-53783438-3	chr11	53783330	53783530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12957.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	49.67	42.26	67.88	49.07	62.59	62.71	44.84	51.62	51.73	56.74	49.24	50.12
Merged-chr10-96502204-3	chr10	96502108	96502308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-114793.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	42.4	34.46	55.33	44.24	46.64	48.92	62.12	56.3	42.88	45.69	53.77	20.99
Merged-chr11-3147451-2	chr11	3147360	3147560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	RMER4B|LTR|ERVK	23439.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	34.73	48.54	51.34	49.87	94.91	75.26	102.97	52.26	3.54	6.03	0.5	3.45
Merged-chr14-105435423-3	chr14	105435320	105435520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045859, intron 2 of 2)	intron (NR_045859, intron 2 of 2)	7861.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	53.7	83.0	141.47	127.5	26.59	45.78	37.2	68.19	87.33	83.85	133.66	67.35
Merged-chr13-37498214-3	chr13	37498137	37498337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152892.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	67.84	59.61	77.58	52.29	70.37	102.54	55.47	51.03	13.18	4.02	11.56	6.27
Merged-chr2-31069728-3	chr2	31069643	31069843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	MTB_Mm|LTR|ERVL-MaLR	26757.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	22.61	19.62	29.66	34.99	33.55	23.52	31.89	30.76	26.75	29.12	42.21	26.31
Merged-chr18-46573030-3	chr18	46572928	46573128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173394, intron 1 of 2)	L2|LINE|L2	1505.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	23.82	33.7	25.67	44.24	27.41	36.37	26.57	46.43	40.32	30.63	48.74	22.87
Merged-chr13-119809122-3	chr13	119809047	119809247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-18025.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	51.28	39.74	66.74	64.75	62.18	70.55	50.49	89.33	89.1	68.79	108.54	56.07
Merged-chr19-5488029-1	chr19	5487929	5488129	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153768, exon 1 of 16)	non-coding (NR_153768, exon 1 of 16)	350.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	26.25	18.11	38.22	7.64	30.68	27.59	16.61	20.78	39.53	34.65	27.64	34.46
Merged-chr6-87509299-3	chr6	87509197	87509397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	L1M4c|LINE|L1	-12970.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	21.0	25.15	42.78	19.71	27.82	29.79	40.52	54.34	40.91	37.16	37.69	25.37
Merged-chr18-5603689-3	chr18	5603578	5603778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	11031.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	36.34	30.43	31.95	24.94	33.55	26.34	13.62	49.15	40.71	47.7	53.26	21.3
Merged-chr12-34723263-3	chr12	34723167	34723367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	193828.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	69.05	45.02	78.15	81.65	54.0	61.77	49.83	77.47	55.47	48.2	45.22	28.51
Merged-chr19-23687413-3	chr19	23687339	23687539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028208)	promoter-TSS (NM_028208)	39.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	55.32	60.62	71.31	72.8	90.82	73.69	57.47	87.81	63.53	63.77	71.35	51.69
Merged-chr14-76152268-1	chr14	76152168	76152368	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41377.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	22.21	23.9	21.11	19.31	17.18	20.07	31.22	22.29	15.93	24.6	24.12	20.36
Merged-chr4-141559354-3	chr4	141559249	141559449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13187.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	35.53	27.92	17.11	27.35	29.86	50.49	30.56	31.23	59.6	35.65	51.76	29.76
Merged-chr10-68241206-3	chr10	68241111	68241311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	37515.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	133.25	118.47	137.48	137.95	142.37	148.01	150.81	146.13	113.88	116.99	181.9	108.7
Merged-chr8-123374342-3	chr8	123374243	123374443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359076, intron 1 of 16)	CpG	632.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	41.59	42.26	45.07	49.87	65.05	53.93	34.55	35.64	61.76	50.71	49.24	38.85
Merged-chr16-17928796-3	chr16	17928702	17928902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153150)	promoter-TSS (NM_153150)	-583.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	80.76	67.91	51.91	74.0	55.23	69.3	37.54	42.67	82.22	57.74	71.35	48.24
Merged-chr11-47171359-3	chr11	47171262	47171462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 3 of 7)	intron (NM_011891, intron 3 of 7)	207940.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	56.53	26.16	77.01	82.05	76.91	51.43	84.04	93.59	50.35	61.26	96.98	44.8
Merged-chr11-44399091-3	chr11	44398976	44399176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-987.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	92.07	77.97	59.9	55.1	81.41	116.96	61.12	50.58	78.28	89.88	91.45	34.15
Merged-chr7-105744371-3	chr7	105744262	105744462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-24.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	94.89	65.9	53.62	66.36	88.37	77.14	41.85	83.92	87.72	95.4	136.17	44.8
Merged-chr11-117091992-3	chr11	117091889	117092089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14641.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	8.08	15.09	16.54	14.48	15.14	19.44	24.58	25.26	24.59	21.09	32.66	22.56
Merged-chr7-102244054-3	chr7	102243948	102244148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	6070.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	30.28	18.86	34.8	23.73	41.73	38.88	22.59	31.65	40.52	33.64	51.76	19.42
Merged-chr14-18239218-3	chr14	18239093	18239293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011584)	promoter-TSS (NM_011584)	-87.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	186.55	183.11	176.84	198.69	169.78	302.91	247.8	199.6	229.34	234.48	265.31	134.08
Merged-chr9-65215114-3	chr9	65215012	65215212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177460, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	422.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	33.11	25.66	30.23	39.82	49.91	38.26	40.86	38.27	42.88	33.64	44.72	26.0
Merged-chr17-87304550-3	chr17	87304441	87304641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	21655.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	85.2	68.42	84.43	55.1	88.37	91.88	63.78	95.83	92.44	88.87	116.07	59.52
Merged-chr5-92309964-3	chr5	92309811	92310011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172713, exon 1 of 22)	5' UTR (NM_172713, exon 1 of 22)	113.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	30.28	35.47	34.8	37.0	38.46	46.72	45.18	33.56	66.28	62.26	90.45	46.05
Merged-chr13-59771524-3	chr13	59771425	59771625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153538)	TTS (NM_153538)	1559.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	69.45	51.31	66.74	59.12	78.55	108.81	59.13	82.26	81.82	72.3	71.35	48.87
Merged-chr4-63586351-3	chr4	63586215	63586415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356354)	TTS (NM_001356354)	14449.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	33.11	23.39	20.54	14.88	26.59	38.57	37.2	34.26	28.13	33.64	25.12	35.09
Merged-chr7-127480598-3	chr7	127480491	127480691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-4630.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	54.51	51.56	39.93	26.95	42.96	61.15	26.24	35.16	48.39	44.19	59.8	34.46
Merged-chr18-61120751-3	chr18	61120640	61120840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	3272.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	50.47	35.21	69.03	64.35	73.64	87.8	52.15	73.12	73.76	77.83	75.37	46.68
Merged-chr5-121584345-3	chr5	121584232	121584432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	9492.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	95.3	42.76	69.6	63.95	88.37	81.22	66.77	88.77	68.64	91.89	105.52	67.98
Merged-chr3-96727610-3	chr3	96727510	96727710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	-1.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	146.98	179.59	141.47	201.1	178.78	202.88	122.9	164.22	168.56	182.26	219.08	87.71
Merged-chr17-34153090-3	chr17	34152995	34153195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010387)	promoter-TSS (NM_010387)	-96.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	31.09	28.17	30.23	13.27	31.09	35.75	17.27	10.54	102.67	78.33	79.89	35.09
Merged-chr4-140975615-3	chr4	140975490	140975690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 5 of 7)	intron (NM_001355515, intron 5 of 7)	-11283.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	71.07	68.92	124.36	100.15	102.28	135.46	114.27	126.48	95.79	65.27	141.2	57.95
Merged-chr17-47695001-3	chr17	47694927	47695127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290337)	promoter-TSS (NM_001290337)	-180.0	NM_144939	107971.0	Mm.392206	NM_144939	ENSMUSG00000023266	Frs3	4930417B13Rik|AI449674|Frs2beta|Snt2	fibroblast growth factor receptor substrate 3	protein-coding	94.49	90.8	107.25	85.27	121.91	129.51	94.34	104.02	154.79	174.73	187.43	87.4
Merged-chr6-32184750-3	chr6	32184644	32184844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	134456.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	99.74	86.27	85.57	94.92	130.09	113.51	102.97	163.68	111.52	87.37	139.19	60.77
Merged-chr11-96824261-3	chr11	96824144	96824344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130454)	promoter-TSS (NM_001130454)	-117.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	37.15	26.66	25.67	31.37	29.05	39.2	19.6	24.9	50.94	30.63	31.66	20.68
Merged-chr17-25833476-3	chr17	25833340	25833540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-79.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	95.3	79.99	122.65	86.07	76.09	135.78	70.75	88.57	127.65	110.97	160.79	82.39
Merged-chr19-8920409-3	chr19	8920333	8920533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	40.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	63.8	59.36	57.05	60.73	61.37	81.53	50.82	57.5	78.68	55.73	67.84	51.69
Merged-chr17-67354623-3	chr17	67354537	67354737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-146.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	115.08	121.99	118.65	88.48	110.87	170.9	167.08	173.36	179.77	187.29	242.7	95.86
Merged-chr17-3114645-1	chr17	3114545	3114745	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-327.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	37.96	34.71	22.25	39.82	35.18	54.25	38.53	35.83	48.78	54.23	39.19	41.98
Merged-chr6-34910786-5	chr6	34910635	34910835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013366)	promoter-TSS (NM_001013366)	96.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	77.12	70.68	68.45	51.88	55.64	114.45	90.02	74.22	73.95	90.88	77.88	54.82
Merged-chr7-92638347-3	chr7	92638245	92638445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1203.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	73.09	72.44	88.99	69.18	87.14	90.31	64.77	67.18	108.38	59.75	85.92	56.7
Merged-chr10-111165656-3	chr10	111165523	111165723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	CpG	821.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	56.13	73.95	43.35	31.37	58.5	93.44	52.48	43.51	53.89	50.71	53.26	36.97
Merged-chr15-64059220-3	chr15	64059133	64059333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	531.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	89.24	68.92	89.56	87.68	67.5	75.57	61.12	87.79	84.38	83.85	91.95	75.5
Merged-chr18-15201711-3	chr18	15201630	15201830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50284.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	27.05	13.83	63.89	20.11	40.91	25.71	39.86	58.79	44.45	33.64	91.45	38.53
Merged-chr8-57591495-3	chr8	57591413	57591613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-60240.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	29.88	31.44	49.63	30.16	37.23	33.55	30.56	39.67	67.07	38.16	42.21	35.71
Merged-chr3-27236982-3	chr3	27236863	27237063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	MTC|LTR|ERVL-MaLR	53959.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	30.28	37.23	40.5	30.97	62.59	71.49	47.5	70.12	81.63	53.22	90.45	61.09
Merged-chr14-55681551-3	chr14	55681479	55681679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145705, exon 1 of 9)	exon (NM_145705, exon 1 of 9)	238.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	52.49	36.72	39.36	41.02	44.59	49.86	21.59	36.93	53.89	44.69	58.29	42.6
Merged-chr2-145806846-2	chr2	145806758	145806958	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20742.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	10.5	7.55	15.97	16.09	20.05	18.5	31.22	21.31	22.03	24.1	29.14	12.84
Merged-chr19-10240796-3	chr19	10240718	10240918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-70.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	39.17	55.08	49.63	49.47	42.14	41.71	28.57	42.5	41.3	74.31	55.78	34.15
Merged-chr1-134099301-3	chr1	134099195	134099395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11947.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	130.83	112.68	181.41	176.57	155.46	181.25	196.98	178.21	184.3	181.26	282.9	134.7
Merged-chr9-31280910-3	chr9	31280816	31281016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9515.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	88.84	89.54	50.77	78.43	76.09	86.86	103.64	74.72	87.53	105.44	123.11	60.15
Merged-chr10-40525625-1	chr10	40525525	40525725	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44737.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	8.88	6.54	6.85	4.83	6.95	16.62	1.33	7.82	11.21	5.02	13.57	2.19
Merged-chr3-115789292-3	chr3	115789202	115789402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74247.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	14.94	20.12	29.66	43.44	33.14	26.97	58.46	75.7	29.7	17.07	46.23	23.49
Merged-chr2-165319675-3	chr2	165319558	165319758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1168.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	69.45	59.36	78.72	64.75	71.59	90.94	75.73	84.0	67.46	81.34	92.96	53.26
Merged-chr11-78697962-3	chr11	78697862	78698062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	71.07	91.81	75.3	86.07	108.0	143.62	45.51	65.5	91.07	77.83	77.88	66.73
Merged-chr1-35869745-3	chr1	35869641	35869841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198659.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	205.53	184.12	172.85	215.58	19.64	39.2	37.54	31.15	41.3	29.62	53.26	21.62
Merged-chr9-63399235-3	chr9	63399127	63399327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	17.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	88.84	78.48	75.3	77.22	94.09	110.69	90.68	108.25	96.18	112.47	83.91	56.07
Merged-chr12-85964700-3	chr12	85964599	85964799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	114342.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	31.09	17.86	43.93	51.48	83.87	67.1	78.06	92.8	38.75	51.72	65.83	41.98
Merged-chr7-97696632-3	chr7	97696536	97696736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023671)	promoter-TSS (NM_023671)	-15.0	NR_154551	102641859.0	Mm.211743	NR_154551		Rsf1os2	Gm15623	remodeling and spacing factor 1, opposite strand 2	ncRNA	98.53	103.88	72.45	92.51	101.87	111.32	73.74	74.22	110.74	104.44	109.04	75.81
Merged-chr2-150861275-3	chr2	150861180	150861380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	B2_Mm2|SINE|B2	-18710.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	61.78	33.45	66.17	75.61	53.59	36.06	41.19	58.09	40.32	30.63	65.32	28.51
Merged-chrX-74373382-3	chrX	74373279	74373479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278271)	promoter-TSS (NM_001278271)	-30.0	NR_103489	100169864.0	Mm.3979	NM_001278271	ENSMUSG00000015290	Gm44504	Gm38419|Slc10a3-ubl4|SlcUbl4a|Tu11	predicted readthrough transcript (NMD candidate), 44504	protein-coding	66.22	85.02	82.15	83.26	80.18	112.89	58.79	78.5	106.41	126.53	115.57	64.53
Merged-chr3-52755122-3	chr3	52754994	52755194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038079, intron 1 of 3)	MIR|SINE|MIR	15370.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	58.55	44.52	55.9	53.09	23.32	37.0	48.16	50.83	89.89	76.82	88.44	47.3
Merged-chr3-108990329-3	chr3	108990227	108990427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 4 of 10)	intron (NM_001163567, intron 4 of 10)	37280.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	25.84	26.66	26.81	37.81	31.5	47.04	39.86	61.23	21.64	29.12	38.19	20.99
Merged-chr5-64202775-1	chr5	64202675	64202875	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	L1MB8|LINE|L1	-27582.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.83	2.52	0.0	0.8	0.0	3.14	12.62	9.76	6.49	3.01	3.52	3.76
Merged-chr5-100509443-3	chr5	100509340	100509540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8801.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	69.86	48.8	73.02	47.86	92.87	102.54	55.8	64.01	110.74	110.46	130.65	64.53
Merged-chr7-4866270-3	chr7	4866174	4866374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-95.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	31.5	42.26	23.96	63.55	43.77	45.47	27.24	83.02	209.28	188.79	279.88	115.28
Merged-chr2-71924229-1	chr2	71924129	71924329	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	49325.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	1.21	1.01	1.14	0.8	0.82	0.0	3.32	0.9	36.58	18.58	52.26	27.88
Merged-chr11-88242076-2	chr11	88241956	88242156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37668.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	15.75	3.02	9.13	14.48	14.32	12.54	17.61	15.03	2.75	0.0	1.0	1.57
Merged-chr2-127086391-3	chr2	127086292	127086492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 4 of 7)	intron (NM_026678, intron 4 of 7)	15735.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	37.55	45.53	74.16	79.64	39.68	59.58	45.51	47.16	60.97	63.77	83.91	49.5
Merged-chr2-72978613-3	chr2	72978532	72978732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	649.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	12.52	13.58	22.82	15.69	19.23	30.73	22.26	27.25	31.86	30.13	43.72	19.11
Merged-chr15-102203512-3	chr15	102203389	102203589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-156.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	76.72	73.45	86.14	81.65	67.09	87.17	50.49	60.11	108.77	122.01	137.18	65.47
Merged-chr5-139791473-3	chr5	139791383	139791583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-53.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	142.94	144.63	148.89	131.12	149.32	175.6	116.59	124.26	203.57	208.37	187.43	126.25
Merged-chr11-54149989-3	chr11	54149884	54150084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	49060.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	36.34	37.48	54.19	55.91	79.37	77.14	50.16	74.55	48.19	45.19	61.3	49.81
Merged-chr2-71389155-3	chr2	71389057	71389257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-103.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	134.87	141.61	148.32	148.81	182.05	206.02	152.13	187.32	226.19	192.31	258.28	124.99
Merged-chr9-78039246-3	chr9	78039148	78039348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	46.84	43.01	25.1	37.0	41.73	49.54	23.25	30.42	53.7	29.62	37.69	30.39
Merged-chr16-94566222-3	chr16	94566109	94566309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-3997.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	71.47	56.34	30.23	18.9	31.91	76.83	26.57	19.12	36.98	58.24	46.23	21.93
Merged-chr12-84762640-3	chr12	84762518	84762718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10494.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	68.24	62.63	75.3	80.04	79.78	81.22	38.2	86.33	103.26	55.23	86.93	51.69
Merged-chr12-112594673-3	chr12	112594576	112594776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5892.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	22.21	13.33	15.97	9.65	37.23	55.82	31.56	48.36	39.53	40.17	56.28	33.83
Merged-chr9-90216552-3	chr9	90216471	90216671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53593.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	56.94	34.21	61.04	59.12	74.05	40.76	84.04	92.27	44.45	50.21	68.34	37.28
Merged-chr10-112160356-3	chr10	112160264	112160464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3257.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	74.3	47.79	71.31	46.25	60.96	44.21	38.53	57.84	76.12	57.74	110.55	48.24
Merged-chr13-34051804-3	chr13	34051669	34051869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	14128.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	41.99	33.7	49.63	25.74	36.0	34.18	27.57	36.56	32.26	36.65	41.71	30.07
Merged-chr2-167959014-3	chr2	167958904	167959104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	26677.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	71.07	39.99	87.85	45.85	64.64	66.16	30.89	69.14	53.11	30.63	64.82	37.28
Merged-chr15-50870326-3	chr15	50870227	50870427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18722.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	83.59	70.18	70.74	76.82	70.37	76.2	61.78	101.55	83.59	70.29	110.55	54.51
Merged-chr11-34063867-3	chr11	34063777	34063977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	16949.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	62.59	48.29	48.49	40.22	62.59	81.84	57.47	46.23	89.49	98.41	75.37	46.99
Merged-chr11-60811263-3	chr11	60811160	60811360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	5.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	182.52	160.98	159.16	117.04	139.1	205.7	132.54	138.0	212.82	202.35	212.55	105.88
Merged-chr3-95819456-3	chr3	95819362	95819562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-509.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	73.49	67.91	77.01	48.26	75.68	84.35	41.85	53.75	87.13	112.47	106.02	49.18
Merged-chr15-89180832-3	chr15	89180752	89180952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138749)	promoter-TSS (NM_138749)	-64.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	65.01	60.62	49.63	51.88	71.59	77.14	56.14	62.86	73.17	71.3	93.46	51.69
Merged-chr7-135758961-3	chr7	135758847	135759047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42568.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	55.72	51.81	73.02	48.67	70.77	67.42	37.87	65.24	62.74	41.67	72.36	46.68
Merged-chr6-4977637-3	chr6	4977524	4977724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	MTE2a|LTR|ERVL-MaLR	74304.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	32.3	21.63	30.8	37.4	31.5	68.05	30.56	45.2	27.54	39.67	35.68	32.89
Merged-chr4-70410482-3	chr4	70410377	70410577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-42.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	214.82	218.33	179.12	201.5	223.78	257.13	210.26	252.2	275.17	299.76	271.34	129.38
Merged-chr18-9489731-5	chr18	9489681	9489881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39627.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	33.92	41.5	29.09	36.6	51.55	44.21	62.12	57.9	69.04	42.18	49.75	41.98
Merged-chr2-84678259-3	chr2	84678167	84678367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290751)	promoter-TSS (NM_001290751)	-93.0	NM_001290751	66958.0	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	253.99	271.15	310.9	345.89	294.55	332.7	313.57	359.27	366.04	409.22	396.96	221.79
Merged-chr10-81429764-3	chr10	81429657	81429857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	-2584.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	40.78	47.79	49.63	65.16	61.77	72.75	33.22	60.9	66.87	70.29	77.88	43.23
Merged-chr15-57976552-3	chr15	57976444	57976644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9359.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	27.05	34.71	34.8	21.32	33.14	68.36	28.57	23.69	29.9	48.7	43.72	23.49
Merged-chr6-146642530-3	chr6	146642439	146642639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-40.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	196.24	187.14	213.35	200.7	192.28	262.46	185.35	233.86	293.85	340.43	377.36	178.56
Merged-chr3-115902506-3	chr3	115902405	115902605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027193, intron 4 of 7)	intron (NM_027193, intron 4 of 7)	14322.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	45.23	30.43	47.92	50.27	64.64	53.31	48.16	75.28	69.82	54.23	96.48	47.3
Merged-chr11-98789009-3	chr11	98788889	98789089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6527.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	91.66	83.0	83.29	64.75	83.46	128.88	63.44	73.04	99.13	92.89	92.96	46.68
Merged-chr15-35155841-3	chr15	35155726	35155926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019635)	promoter-TSS (NM_019635)	-20.0	NM_019635	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	187.76	201.73	192.24	246.95	240.96	240.2	199.3	271.85	230.13	192.31	362.79	142.54
Merged-chr8-122561386-3	chr8	122561289	122561489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6626.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	14.94	19.62	22.82	27.35	47.05	29.79	55.47	96.62	31.47	24.1	48.74	34.15
Merged-chrX-9460662-3	chrX	9460564	9460764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 3 of 12)	intron (NM_007807, intron 3 of 12)	8660.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	74.3	58.35	72.45	60.33	99.82	116.65	105.63	87.36	84.18	103.94	136.17	61.09
Merged-chr10-70201798-3	chr10	70201690	70201890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2874.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	25.44	21.13	34.8	19.71	26.18	24.46	19.93	20.5	32.06	18.08	35.68	38.22
Merged-chr4-46450981-3	chr4	46450874	46451074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	48.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	117.1	98.1	114.66	98.54	128.87	91.88	88.36	95.22	129.42	149.63	227.12	90.85
Merged-chr12-82240866-3	chr12	82240762	82240962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-70487.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	29.48	31.69	50.2	44.64	57.27	40.14	31.56	60.0	71.4	71.8	50.75	40.1
Merged-chr8-115428219-3	chr8	115428108	115428308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	278686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	45.63	25.91	48.49	37.81	42.55	52.68	42.52	64.82	74.35	48.2	90.95	38.53
Merged-chr17-34561406-3	chr17	34561320	34561520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	47.65	35.72	35.94	57.92	49.91	63.97	32.55	38.97	82.41	79.33	68.84	46.36
Merged-chr10-58446444-2	chr10	58446337	58446537	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-415.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	55.32	36.47	54.76	54.3	49.09	55.82	34.55	72.06	86.15	54.23	84.42	42.29
Merged-chr15-9123203-3	chr15	9123118	9123318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	17236.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	29.07	36.47	38.22	28.15	22.09	44.84	34.55	50.69	57.63	49.71	74.37	42.29
Merged-chr14-54377322-3	chr14	54377205	54377405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	16464.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	31.5	25.91	42.78	26.55	69.55	72.75	62.12	60.81	29.9	27.62	27.64	16.92
Merged-chr16-21204609-3	chr16	21204475	21204675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-220.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	139.71	135.83	120.37	156.05	121.09	155.53	111.94	136.85	191.97	185.78	214.56	105.26
Merged-chr17-46747458-3	chr17	46747359	46747559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001305988, exon 2 of 5)	exon (NM_001305988, exon 2 of 5)	4755.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	15.75	29.43	27.38	22.93	50.73	35.12	37.2	28.18	28.91	44.69	37.69	14.72
Merged-chr6-91684033-3	chr6	91683950	91684150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-17.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	97.72	99.35	74.16	85.67	103.5	112.89	83.71	64.6	127.06	119.5	116.07	73.62
Merged-chr19-5637433-3	chr19	5637265	5637465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-125.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	78.34	88.79	92.41	67.17	69.96	130.76	49.83	50.8	99.92	120.51	107.53	57.01
Merged-chr2-36272503-3	chr2	36272401	36272601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	42075.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	17.77	19.87	24.53	15.28	20.86	15.37	15.61	21.87	16.52	29.12	18.59	16.6
Merged-chr9-121277744-3	chr9	121277643	121277843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-571.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	40.78	32.7	31.38	33.38	34.77	56.76	27.9	49.82	76.91	79.83	108.03	45.42
Merged-chr14-57798179-3	chr14	57798087	57798287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-2.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	136.08	132.05	90.7	117.44	124.37	148.63	80.05	85.09	177.81	169.21	189.44	88.97
Merged-chr6-29216357-3	chr6	29216248	29216448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	16.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	71.88	64.64	103.82	84.86	100.64	83.1	73.41	97.79	91.46	93.39	108.54	56.07
Merged-chr14-60273881-3	chr14	60273785	60273985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8680.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	39.98	46.28	22.82	16.89	53.18	64.91	20.59	16.77	48.19	63.77	41.2	14.1
Merged-chr13-102693506-3	chr13	102693395	102693595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-52.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	35.53	43.26	34.8	56.31	38.05	44.21	41.19	71.83	51.34	58.75	69.85	43.23
Merged-chr10-95508984-3	chr10	95508898	95509098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6164.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	52.09	47.54	48.49	45.85	57.27	91.56	52.15	65.64	67.46	88.37	71.86	48.24
Merged-chr6-121183879-3	chr6	121183761	121183961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130903, exon 1 of 7)	non-coding (NR_130903, exon 1 of 7)	194.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	57.74	45.02	35.37	54.7	65.87	57.7	26.91	68.38	60.38	64.27	100.5	57.33
Merged-chr13-111805919-3	chr13	111805819	111806019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3074.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	21.8	22.13	23.39	25.34	30.27	21.01	20.59	42.87	38.16	33.64	51.25	23.49
Merged-chr3-27210428-3	chr3	27210325	27210525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	27421.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	48.46	27.17	35.37	34.99	48.27	51.74	31.56	44.3	59.4	77.32	64.32	44.48
Merged-chr13-55329895-3	chr13	55329802	55330002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-172.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	65.01	79.23	70.74	72.8	87.14	113.83	63.78	69.59	71.79	80.34	91.95	46.99
Merged-chr11-52099341-3	chr11	52099204	52099404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019411, intron 1 of 6)	CpG	480.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	23.82	34.21	26.24	18.1	27.82	41.71	24.58	20.47	51.34	41.17	64.32	33.52
Merged-chrUn_JH584304-7632-1	chrUn_JH584304	7532	7732	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	52057.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	58.81	52.22	42.21	28.51
Merged-chr3-104790997-3	chr3	104790910	104791110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1976.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	26.25	28.17	43.35	23.73	40.91	69.93	62.45	62.16	27.73	31.63	27.64	26.31
Merged-chr4-34386547-3	chr4	34386443	34386643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-164072.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	61.38	53.83	43.93	69.18	88.78	86.86	49.16	82.63	88.12	79.83	87.43	30.07
Merged-chr11-97659666-3	chr11	97659575	97659775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3737.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	107.41	113.44	134.63	66.36	143.19	163.69	83.04	78.03	155.19	135.57	152.75	81.76
Merged-chr3-41742535-3	chr3	41742439	41742639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	-25.0	NM_001081411	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	257.22	219.58	244.16	223.62	242.19	316.71	215.58	299.19	325.72	298.75	472.84	210.83
Merged-chr3-8971829-3	chr3	8971730	8971930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MLT1J1|LTR|ERVL-MaLR	-7684.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	44.01	36.97	26.81	46.66	39.27	71.18	32.88	39.45	52.71	67.28	147.23	30.7
Merged-chr14-20842800-3	chr14	20842705	20842905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008873, exon 11 of 11)	3' UTR (NM_008873, exon 11 of 11)	6143.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	41.99	45.78	43.35	23.73	38.05	51.43	21.92	33.93	58.81	55.73	56.78	33.83
Merged-chr17-45746960-3	chr17	45746864	45747064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	12458.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	39.57	42.51	109.53	39.01	53.18	35.12	74.74	39.79	69.04	48.7	86.43	41.35
Merged-chr19-55803283-3	chr19	55803184	55803384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	61474.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	34.32	26.66	34.23	42.23	39.27	26.65	51.49	52.68	21.05	20.59	40.7	14.41
Merged-chr19-6910098-3	chr19	6909993	6910193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	13.0	NM_012021	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	67.84	71.43	77.01	45.45	70.77	88.11	42.85	32.07	84.97	75.32	70.85	54.2
Merged-chr3-108554763-3	chr3	108554652	108554852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028538)	promoter-TSS (NR_028538)	-350.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	48.86	62.13	71.88	69.98	56.05	97.83	35.87	35.55	90.67	113.98	93.96	45.11
Merged-chr1-46852870-3	chr1	46852774	46852974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356416, intron 1 of 10)	CpG	744.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	19.38	50.56	39.93	39.01	59.73	39.82	54.14	51.53	64.91	48.7	87.93	41.98
Merged-chr4-120925053-3	chr4	120924950	120925150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-45.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	68.24	70.68	66.74	55.5	53.59	71.81	34.88	47.02	81.43	91.38	82.41	39.78
Merged-chr18-76241848-3	chr18	76241742	76241942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010754, exon 1 of 11)	5' UTR (NM_010754, exon 1 of 11)	141.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	50.88	48.8	38.22	24.94	47.46	51.11	49.16	50.02	64.32	46.19	73.86	22.24
Merged-chr1-176828189-3	chr1	176828109	176828309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	7924.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	48.05	39.24	64.46	61.54	38.46	36.69	30.23	60.0	57.43	55.23	65.32	47.3
Merged-chr12-85455370-3	chr12	85455254	85455454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18536.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	206.74	177.58	156.31	180.59	226.23	289.11	178.38	180.28	278.51	351.98	303.0	179.19
Merged-chr8-69774935-3	chr8	69774748	69774948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177899)	promoter-TSS (NM_177899)	63.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	55.32	83.76	66.17	84.46	69.14	72.12	60.46	75.7	63.73	97.41	90.45	63.28
Merged-chr14-70024892-3	chr14	70024796	70024996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-52549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	91.26	89.8	95.84	63.95	105.96	130.45	96.99	94.37	119.0	120.51	139.19	67.35
Merged-chr2-51089069-3	chr2	51088964	51089164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60047.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	25.04	21.13	22.82	24.13	28.64	30.73	23.58	34.57	35.01	28.62	55.78	19.11
Merged-chr9-75314204-3	chr9	75314119	75314319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073186, exon 1 of 12)	non-coding (NR_073186, exon 1 of 12)	151.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	48.05	43.51	32.52	45.85	47.46	82.47	94.34	54.11	47.6	54.23	76.88	47.93
Merged-chr15-99388291-3	chr15	99388231	99388431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4616.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	91.66	66.91	82.15	55.5	75.28	87.8	70.75	84.42	89.3	63.27	81.9	55.45
Merged-chr1-64121720-3	chr1	64121636	64121836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-347.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	201.09	243.73	236.17	232.47	261.83	321.73	243.48	281.8	321.39	309.8	437.16	218.35
Merged-chr2-170153788-3	chr2	170153649	170153849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11074.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	30.69	26.91	18.25	18.9	33.55	41.08	21.59	23.16	37.76	37.66	42.71	22.56
Merged-chrX-73967700-3	chrX	73967594	73967794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1337.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	40.38	42.51	24.53	44.24	37.23	41.39	38.53	37.21	30.09	34.65	49.75	26.94
Merged-chr10-85957790-3	chr10	85957678	85957878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145422)	promoter-TSS (NM_145422)	15.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	60.57	59.61	52.48	80.04	73.23	52.68	37.87	69.2	76.12	66.28	69.34	53.88
Merged-chr13-92274660-3	chr13	92274541	92274741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311120, intron 14 of 23)	intron (NM_001311120, intron 14 of 23)	-80142.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	37.96	28.93	71.88	63.15	56.46	63.97	61.45	111.39	57.63	44.69	64.82	43.54
Merged-chr15-89123154-3	chr15	89123064	89123264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-14.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	54.92	49.3	39.36	34.59	33.96	53.62	14.95	36.48	77.5	84.35	65.83	36.34
Merged-chrX-103493484-3	chrX	103493380	103493580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015508)	promoter-TSS (NR_015508)	-78.0	NR_015508	70252.0	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	56.94	53.32	58.76	37.81	69.55	68.99	40.86	63.81	73.56	65.78	104.52	39.78
Merged-chr2-152739553-6	chr2	152739532	152739732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3381.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	27.86	22.13	21.68	34.99	42.14	32.93	14.95	20.47	32.26	46.19	42.71	27.25
Merged-chr11-59191921-3	chr11	59191830	59192030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	22.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	33.11	41.0	16.54	37.81	42.55	31.36	32.88	29.07	75.53	78.33	77.88	54.82
Merged-chr2-124690572-3	chr2	124690464	124690664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	36983.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	33.52	32.2	100.4	90.9	88.78	80.9	104.3	156.06	81.43	71.3	153.76	66.1
Merged-chr13-112365958-3	chr13	112365840	112366040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	77422.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	25.04	24.4	9.7	31.77	26.59	31.98	19.6	27.42	18.29	14.06	15.58	15.04
Merged-chr9-20973867-3	chr9	20973724	20973924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	2969.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	55.72	45.02	61.61	69.98	69.55	55.5	39.2	73.77	38.55	57.24	67.84	45.11
Merged-chr1-180296237-3	chr1	180296147	180296347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-34229.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	23.42	13.58	56.48	28.15	36.41	38.26	56.14	54.5	31.27	32.13	68.34	18.8
Merged-chr11-29547815-3	chr11	29547694	29547894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028504)	promoter-TSS (NM_028504)	-156.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	49.26	70.18	36.51	63.15	49.5	63.03	94.67	34.82	56.45	55.73	64.32	33.21
Merged-chr4_GL456216_random-17295-1	chr4_GL456216_random	17195	17395	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 1 of 6)	intron (NM_001033326, intron 1 of 6)	1414.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	267.3	245.03	316.56	148.18
Merged-chr19-8967021-3	chr19	8966932	8967132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-9.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	216.03	202.23	151.74	244.54	210.69	281.59	142.83	141.22	245.07	247.04	273.35	148.8
Merged-chr19-24281557-2	chr19	24281451	24281651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008044)	promoter-TSS (NM_008044)	-965.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	17.36	18.36	19.4	16.49	22.09	18.5	20.26	13.63	3.34	3.51	7.03	5.64
Merged-chr19-40630825-3	chr19	40630725	40630925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1MDa|LINE|L1	18459.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	102.56	71.18	103.82	91.3	103.5	79.96	72.08	82.49	69.23	70.8	85.92	44.17
Merged-chr16-75917854-3	chr16	75917739	75917939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8573.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	22.21	41.25	35.94	19.71	52.77	53.62	24.91	37.09	40.12	51.21	54.77	17.23
Merged-chr10-61680254-3	chr10	61680182	61680382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-3.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	211.59	175.06	225.33	160.88	205.78	244.59	185.35	203.36	311.95	313.82	384.9	191.41
Merged-chr1-170311533-1	chr1	170311433	170311633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039593, intron 1 of 1)	intron (NM_001039593, intron 1 of 1)	2672.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	14.94	13.33	19.97	7.24	0.0	2.51	3.65	0.0	0.0	0.5	0.0	0.63
Merged-chr12-71015814-3	chr12	71015706	71015906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	17.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	266.91	281.46	214.49	312.11	290.87	358.41	257.76	273.23	346.76	422.77	408.52	210.52
Merged-chr8-106683566-3	chr8	106683461	106683661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	493.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	23.42	17.61	17.68	14.48	24.14	50.8	17.27	24.53	36.78	34.65	64.32	31.33
Merged-chr14-65343788-3	chr14	65343683	65343883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-14893.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	205.94	242.22	250.43	232.87	216.82	232.36	220.23	197.55	276.94	293.73	344.2	189.53
Merged-chr2-173769376-3	chr2	173769267	173769467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31796.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	8.48	24.9	23.39	18.1	39.68	28.22	22.59	30.36	21.64	14.56	37.69	22.56
Merged-chr16-10476098-3	chr16	10475975	10476175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3997.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	28.27	31.69	45.07	22.12	18.0	32.61	15.94	28.01	29.7	26.11	36.68	15.04
Merged-chr18-24121787-4	chr18	24121644	24121844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172625)	promoter-TSS (NM_172625)	75.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	26.65	34.21	18.25	34.99	31.5	47.35	43.85	24.2	55.47	75.32	63.82	49.81
Merged-chr13-119690251-3	chr13	119690157	119690357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145942)	promoter-TSS (NM_145942)	-94.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	315.36	324.22	339.99	401.8	373.51	410.47	309.25	475.49	459.46	460.93	613.03	269.41
Merged-chr11-59543506-3	chr11	59543432	59543632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 2 of 9)	L1MB2|LINE|L1	846.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	31.09	22.13	25.1	17.29	47.87	42.33	13.29	14.13	52.52	41.67	37.69	20.36
Merged-chr16-85152642-3	chr16	85152545	85152745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	URR1B|DNA|hAT-Charlie	21062.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	61.78	66.91	70.74	58.32	65.87	80.59	72.41	60.84	113.29	108.96	130.65	60.77
Merged-chr10-28520133-2	chr10	28520044	28520244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-148216.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	19.79	15.34	22.25	19.71	27.0	42.33	25.58	36.14	4.72	7.03	8.04	3.13
Merged-chr13-102700987-3	chr13	102700887	102701087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	7429.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	18.57	23.9	22.25	23.73	22.91	39.82	32.22	29.94	35.99	27.62	29.14	26.63
Merged-chr1-170262520-1	chr1	170262420	170262620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6781.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	37.15	23.39	55.33	47.46	0.0	0.0	0.0	0.0	0.79	0.5	0.0	0.0
Merged-chr16-91546627-3	chr16	91546528	91546728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-466.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	48.86	57.6	61.61	60.33	68.32	81.53	80.72	85.57	124.9	111.47	178.88	88.97
Merged-chr6-116673824-3	chr6	116673758	116673958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-22.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	65.82	79.23	63.32	42.63	87.14	96.58	37.87	41.64	93.62	125.02	136.68	64.85
Merged-chr4-139252608-3	chr4	139252518	139252718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58090.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	35.13	34.96	79.29	49.87	30.68	22.89	25.24	31.77	43.07	32.64	58.29	41.04
Merged-chr11-95858802-3	chr11	95858752	95858952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	35.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	137.69	139.85	158.59	150.02	171.01	164.31	118.92	130.77	188.82	201.85	248.23	116.22
Merged-chr4-116123775-3	chr4	116123669	116123869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009015)	promoter-TSS (NM_009015)	-71.0	NR_131048	76786.0	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	48.05	21.88	28.52	24.53	50.73	35.75	21.26	42.34	36.78	27.62	52.26	30.07
Merged-chr10-9902121-3	chr10	9902019	9902219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1079.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	125.58	85.02	134.06	107.79	128.87	147.69	79.06	184.88	133.35	134.06	168.83	54.51
Merged-chrX-7728415-3	chrX	7728302	7728502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138602)	promoter-TSS (NM_138602)	-169.0	NM_138602	54637.0	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	54.51	61.62	62.18	73.6	55.23	73.38	41.52	72.34	56.25	69.29	77.88	36.34
Merged-chr17-43032667-3	chr17	43032589	43032789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16134.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	56.53	47.29	62.18	59.12	35.18	35.43	40.86	49.54	45.04	33.64	51.25	44.8
Merged-chr1-42851216-3	chr1	42851131	42851331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-2.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	123.16	118.72	178.55	167.32	200.05	189.71	137.85	205.91	206.52	200.84	288.43	155.69
Merged-chr1-191878140-3	chr1	191878056	191878256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28625.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	58.95	50.31	37.65	51.48	46.23	61.15	55.14	61.12	63.92	61.76	55.27	43.54
Merged-chr2-32961666-3	chr2	32961514	32961714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	-98.0	NM_009076	269261.0	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	46.03	37.23	38.22	38.21	55.23	40.14	45.18	36.59	49.57	44.19	69.85	41.98
Merged-chrX-151803210-3	chrX	151803101	151803301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021523)	promoter-TSS (NM_021523)	-81.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	126.39	93.07	79.86	71.19	100.23	142.36	71.75	82.77	116.44	114.48	77.88	56.39
Merged-chr4-40723249-3	chr4	40723138	40723338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_077221)	promoter-TSS (NR_077221)	308.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	56.94	64.14	53.62	53.89	46.23	76.2	39.2	44.27	71.2	67.78	98.99	57.95
Merged-chr1-138262580-3	chr1	138262466	138262666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-11172.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	20.59	12.32	17.68	15.28	22.5	21.64	14.95	30.67	28.72	38.66	29.65	15.66
Merged-chr7-100159711-3	chr7	100159627	100159827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026010, exon 1 of 2)	exon (NM_026010, exon 1 of 2)	450.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	74.3	72.94	65.6	68.78	93.68	94.7	58.79	72.76	75.92	78.33	103.51	43.54
Merged-chr2-102745922-3	chr2	102745807	102746007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153852, exon 2 of 3)	non-coding (NR_153852, exon 2 of 3)	853.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	52.9	48.8	45.07	38.61	56.46	70.55	41.52	34.43	49.17	66.28	53.77	29.45
Merged-chr16-17807574-3	chr16	17807446	17807646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153790, exon 11 of 11)	exon (NM_153790, exon 11 of 11)	10264.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	38.36	26.66	35.94	39.82	29.86	31.98	34.88	32.41	20.65	28.62	27.13	13.78
Merged-chr12-32953991-3	chr12	32953895	32954095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_044986)	promoter-TSS (NR_044986)	50.0	NM_013635	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	244.3	234.42	219.63	250.97	229.1	269.36	192.99	246.28	268.09	316.33	385.91	196.42
Merged-chr8-84969573-3	chr8	84969471	84969671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-51.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	21.0	21.38	32.52	24.53	20.46	33.87	17.27	21.98	25.18	32.13	37.18	26.31
Merged-chr5-137503007-2	chr5	137502905	137503105	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-576.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	24.23	15.85	14.83	15.28	33.96	27.91	6.64	9.9	40.91	27.62	11.05	11.59
Merged-chr12-78861684-3	chr12	78861591	78861791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	-53.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	155.87	186.63	170.0	179.78	138.69	197.24	143.17	163.96	202.79	244.02	268.33	133.45
Merged-chrX-51018109-3	chrX	51018004	51018204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172413)	promoter-TSS (NM_172413)	-86.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	31.5	41.5	45.07	29.36	34.36	68.99	43.51	40.49	61.56	65.78	73.36	27.57
Merged-chr4-63409493-3	chr4	63409387	63409587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6042.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	78.74	86.53	33.09	33.78	42.55	140.79	42.85	33.42	92.44	85.86	75.87	28.51
Merged-chr12-12262167-3	chr12	12262093	12262293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029758)	promoter-TSS (NM_029758)	54.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	59.76	54.33	35.37	58.32	39.68	82.78	43.51	44.13	35.8	37.66	46.23	21.93
Merged-chr10-40142317-3	chr10	40142217	40142417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-63.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	177.67	138.09	164.86	100.95	162.41	198.81	94.34	173.86	169.55	176.74	263.8	91.47
Merged-chr9-70503313-3	chr9	70503210	70503410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357494)	promoter-TSS (NM_001357494)	68.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	53.7	76.97	60.47	51.08	67.5	74.0	54.81	54.17	62.94	79.33	79.39	48.24
Merged-chr15-9131168-3	chr15	9131046	9131246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9308.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	111.85	92.81	71.88	102.96	72.41	100.97	101.31	107.36	162.27	121.51	153.76	103.06
Merged-chr18-77967046-3	chr18	77966934	77967134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 12 of 43)	intron (NM_001195633, intron 12 of 43)	28567.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	25.84	19.12	51.91	24.13	24.55	18.5	32.55	32.86	29.31	29.12	59.8	16.92
Merged-chr3-55627272-3	chr3	55627190	55627390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 57 of 57)	intron (NM_030595, intron 57 of 57)	-155220.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	18.57	10.56	24.53	30.16	36.41	17.87	34.21	49.32	19.08	8.54	33.67	20.99
Merged-chr7-45339453-3	chr7	45339381	45339581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010473)	TTS (NM_010473)	4212.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	67.43	101.37	71.88	20.11	54.82	134.84	59.13	35.24	112.51	99.92	58.29	37.91
Merged-chr3-108050686-3	chr3	108050577	108050777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	-5818.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	52.09	30.43	29.09	43.44	45.0	53.62	21.26	50.24	43.27	57.74	63.31	30.39
Merged-chr15-100469020-3	chr15	100468929	100469129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	18.0	NM_134093	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	62.99	38.23	77.58	55.5	68.73	85.61	47.83	56.69	65.1	63.77	83.41	38.22
Merged-chr10-66932772-3	chr10	66932675	66932875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12391.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	51.69	43.77	58.19	63.55	60.96	84.66	41.52	51.56	64.71	63.77	83.91	36.97
Merged-chr13-90089629-3	chr13	90089520	90089720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	-12.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	228.95	220.34	286.37	297.23	300.69	289.43	292.64	411.09	337.71	287.2	503.99	215.21
Merged-chr10-87831766-1	chr10	87831666	87831866	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-26499.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	1.21	3.77	9.13	3.62	2.86	2.82	6.98	7.93	5.7	9.04	6.03	3.13
Merged-chr8-22805709-3	chr8	22805595	22805795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-41.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	168.38	155.19	211.64	203.92	195.14	224.83	160.77	263.16	239.96	225.95	294.45	123.43
Merged-chr7-125596607-3	chr7	125596519	125596719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-6810.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	36.34	23.64	31.95	22.52	32.32	28.54	16.94	24.64	40.71	33.64	46.23	22.24
Merged-chr1-191097966-1	chr1	191097866	191098066	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-448.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	17.36	9.81	11.98	12.07	10.64	14.11	9.3	8.27	17.51	15.57	21.1	14.41
Merged-chr1-151755199-3	chr1	151755098	151755298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151473)	promoter-TSS (NR_151473)	-176.0	NM_001311165	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	258.03	264.1	232.18	277.92	297.01	317.34	242.15	283.71	352.27	386.12	449.72	231.82
Merged-chr15-88509189-3	chr15	88509074	88509274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91128.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	88.03	108.91	135.2	156.86	135.0	108.81	108.62	154.35	155.97	126.53	206.02	108.39
Merged-chr2-18392804-3	chr2	18392667	18392867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	63.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	81.97	74.45	84.43	99.75	90.82	85.61	76.4	111.28	105.82	82.85	114.06	62.34
Merged-chr8-46845163-3	chr8	46845037	46845237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 7 of 7)	intron (NR_152560, intron 7 of 7)	105392.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	44.42	24.15	45.07	68.78	60.55	36.69	66.1	73.32	53.7	44.19	84.92	50.44
Merged-chr16-87354342-3	chr16	87354227	87354427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159331, exon 1 of 5)	exon (NM_001159331, exon 1 of 5)	142.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	94.08	98.1	86.71	117.04	122.32	106.93	144.83	108.45	97.56	124.02	139.19	93.67
Merged-chr12-28732777-3	chr12	28732710	28732910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	17584.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	44.01	31.69	39.93	35.39	39.68	69.3	41.85	55.77	64.91	50.71	64.32	29.45
Merged-chr13-48842449-3	chr13	48842347	48842547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	28438.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	46.44	29.18	57.62	44.64	38.46	42.33	19.6	61.71	34.42	37.16	59.29	41.04
Merged-chr8-119812082-3	chr8	119811982	119812182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	L1MB7|LINE|L1	28497.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	73.89	48.8	84.43	91.3	82.64	69.93	68.43	92.78	81.63	99.92	131.15	76.12
Merged-chr3-127780480-3	chr3	127780378	127780578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	49.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	163.13	190.91	151.74	143.59	171.82	257.44	169.74	132.17	152.04	182.26	200.99	82.7
Merged-chr13-119488488-3	chr13	119488432	119488632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	-148.0	NR_027974	67304.0	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	50.47	66.91	66.17	75.61	87.96	88.11	105.63	125.97	127.06	76.82	167.83	59.21
Merged-chr5-44383199-1	chr5	44383099	44383299	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-156593.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	3.77	0.0	0.0	5.73	2.51	9.97	11.97	5.9	0.5	15.07	10.02
Merged-chr1-86434564-3	chr1	86434472	86434672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8243.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	154.65	131.05	170.0	130.71	166.91	156.16	98.32	134.08	195.31	208.37	212.05	98.68
Merged-chr7-130834488-3	chr7	130834385	130834585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-31239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	100.14	144.13	115.23	94.52	53.59	45.47	51.15	6.14	43.47	55.73	47.74	63.59
Merged-chr19-17276156-1	chr19	17276056	17276256	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	63349.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.62	0.25	1.14	1.21	0.82	0.94	0.33	0.0	100.31	113.48	128.13	90.22
Merged-chr2-36214238-3	chr2	36214132	36214332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	37.15	34.71	22.82	23.33	24.96	44.53	21.92	36.93	42.88	43.68	47.74	23.18
Merged-chr8-27042752-5	chr8	27042672	27042872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039077, intron 1 of 4)	CpG	217.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	48.05	45.53	46.78	41.43	59.73	72.75	59.46	60.48	85.36	99.92	106.02	60.46
Merged-chr11-75769426-3	chr11	75769316	75769516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007873, exon 9 of 9)	3' UTR (NM_007873, exon 9 of 9)	-26393.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	54.11	45.02	62.18	34.59	34.36	56.76	26.91	35.02	62.55	51.21	56.78	23.81
Merged-chr4-41569667-3	chr4	41569600	41569800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159583)	promoter-TSS (NM_001159583)	-94.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	155.87	175.57	157.45	190.64	218.46	208.84	150.47	166.65	357.97	365.53	406.51	205.82
Merged-chr4-55531015-1	chr4	55530915	55531115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010637, intron 2 of 4)	CpG	1460.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	21.4	15.34	7.42	24.94	9.0	10.35	9.63	14.52	13.77	11.05	12.56	16.6
Merged-chr8-80948614-3	chr8	80948504	80948704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66302.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	70.66	42.26	102.11	57.92	123.55	99.09	104.63	106.23	113.69	117.99	171.35	71.74
Merged-chr11-118355374-3	chr11	118355286	118355486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	25.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	40.78	28.93	32.52	26.55	32.73	41.08	29.23	24.95	44.65	40.67	40.7	24.43
Merged-chr11-113732951-1	chr11	113732851	113733051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	18209.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	31.09	28.17	37.65	17.7	3.68	9.41	1.99	0.79	2.95	4.02	0.0	2.51
Merged-chr10-94462922-3	chr10	94462837	94463037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-51920.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	83.59	71.18	115.8	99.34	54.41	46.1	65.77	119.66	79.46	46.7	126.12	71.42
Merged-chr5-36713332-3	chr5	36713192	36713392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17271.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	30.28	43.77	28.52	34.19	46.64	39.82	42.85	32.8	35.4	38.66	30.15	30.39
Merged-chr6-149188771-3	chr6	149188667	149188867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-55.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	170.0	182.36	185.4	218.39	216.82	237.69	180.37	269.27	320.01	263.1	335.16	157.89
Merged-chr10-118868065-3	chr10	118867972	118868172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	CpG	831.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	62.59	68.67	83.29	44.24	52.77	143.3	82.05	43.74	137.68	124.52	198.98	49.18
Merged-chr3-108855559-3	chr3	108855428	108855628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15026.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	107.01	102.62	123.79	136.75	93.28	79.02	63.78	78.11	146.93	148.12	192.95	107.76
Merged-chr16-55623604-3	chr16	55623500	55623700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128869.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	28.27	17.36	37.65	29.36	38.05	38.57	33.88	49.96	39.34	37.16	42.71	23.81
Merged-chr8-35679202-3	chr8	35679106	35679306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-90186.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	27.46	29.43	45.07	54.3	38.86	32.3	47.5	44.24	53.7	32.64	65.32	18.48
Merged-chr8-112011373-3	chr8	112011287	112011487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	28.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	65.82	39.49	53.62	61.94	49.09	57.07	49.49	62.86	81.43	61.26	90.45	48.87
Merged-chr10-20725161-3	chr10	20725104	20725304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013875)	promoter-TSS (NM_013875)	-126.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	82.37	60.62	91.84	83.66	52.37	72.44	54.81	61.93	84.38	89.37	84.92	60.15
Merged-chr5-148311049-3	chr5	148310962	148311162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359511, intron 6 of 6)	MuRRS-int|LTR|ERV1	45845.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	32.71	44.02	53.62	32.58	45.0	35.12	28.9	43.37	45.63	41.67	67.33	41.66
Merged-chr4-72425491-3	chr4	72425393	72425593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	224249.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	31.09	31.44	47.35	39.42	43.77	35.12	33.55	61.77	43.86	40.17	41.71	28.82
Merged-chr2-79696676-3	chr2	79696569	79696769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	84.8	66.65	60.47	50.27	105.55	89.37	75.73	87.87	117.03	105.44	117.08	71.42
Merged-chr4-150486277-3	chr4	150486159	150486359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165915.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	49.26	33.2	40.5	50.68	45.82	37.94	31.22	89.24	49.76	23.1	51.25	38.53
Merged-chr6-87851142-3	chr6	87851086	87851286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013493)	promoter-TSS (NM_013493)	-80.0	NM_001355195	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	114.27	95.58	127.21	96.53	128.46	118.22	85.37	101.69	106.21	109.96	173.86	88.65
Merged-chr8-41024438-3	chr8	41024365	41024565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015457)	TTS (NR_015457)	6997.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	31.9	19.87	22.82	43.84	16.36	13.17	16.94	24.0	38.94	41.67	38.69	42.92
Merged-chrX-152016334-3	chrX	152016206	152016406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019710)	promoter-TSS (NM_019710)	-11.0	NM_025660	66611.0	Mm.158120	NM_025660	ENSMUSG00000025257	Ribc1	2610028I09Rik|W08639	RIB43A domain with coiled-coils 1	protein-coding	121.54	91.05	78.15	80.84	101.46	155.85	93.67	97.82	146.53	109.96	120.6	73.93
Merged-chrX-159735681-3	chrX	159735571	159735771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	27070.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	36.75	33.7	37.08	37.4	47.05	59.27	43.51	66.81	70.61	43.68	84.92	22.56
Merged-chr10-117818759-3	chr10	117818607	117818807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	-26002.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	86.41	76.97	63.89	33.38	91.23	152.08	52.82	72.5	86.35	109.46	73.36	48.56
Merged-chr10-51529095-3	chr10	51528958	51529158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	38160.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	23.82	21.13	38.79	37.81	35.59	25.4	48.5	47.22	53.5	49.71	43.21	46.99
Merged-chr1-151601543-3	chr1	151601447	151601647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	30174.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	106.6	97.84	85.57	59.12	87.14	170.27	67.1	60.06	102.28	105.94	140.7	34.46
Merged-chr19-12501666-3	chr19	12501561	12501761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172442, exon 1 of 9)	5' UTR (NM_172442, exon 1 of 9)	335.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	42.8	38.99	35.94	47.86	41.73	39.51	44.51	33.73	36.98	33.64	21.1	20.36
Merged-chr2-140066790-3	chr2	140066687	140066887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110350)	promoter-TSS (NR_110350)	18.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	163.13	191.92	218.48	226.04	244.64	296.64	219.56	325.91	293.85	303.27	473.84	191.72
Merged-chr19-24989089-3	chr19	24988980	24989180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10449.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	65.41	57.35	80.43	71.59	67.5	86.86	57.8	68.5	87.13	92.39	107.53	56.07
Merged-chr8-13869711-3	chr8	13869599	13869799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	58.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	50.07	38.99	34.23	38.61	60.14	67.1	53.81	56.92	49.17	55.73	87.43	29.76
Merged-chrX-167209165-3	chrX	167209060	167209260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021278)	promoter-TSS (NM_021278)	58.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	92.87	114.45	69.6	89.69	89.59	103.79	78.72	58.09	108.97	146.11	124.11	51.38
Merged-chr2-173276609-3	chr2	173276531	173276731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022995)	promoter-TSS (NM_022995)	-98.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	37.96	27.17	19.97	40.22	75.28	84.35	64.44	106.26	49.96	45.69	102.0	27.88
Merged-chr8-53496426-3	chr8	53496334	53496534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15268.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	47.24	42.26	78.72	80.84	50.32	47.04	48.5	74.1	43.27	52.72	72.86	43.23
Merged-chr7-43562206-3	chr7	43562094	43562294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008549)	promoter-TSS (NM_001008549)	-176.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	116.7	122.49	123.79	110.2	137.87	155.53	88.03	111.76	122.14	200.34	157.78	92.73
Merged-chr3-142620643-3	chr3	142620541	142620741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-22.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	197.46	244.74	144.9	93.71	204.96	296.01	161.44	91.63	152.43	143.1	136.17	63.59
Merged-chr19-12005705-3	chr19	12005614	12005814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31026.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	27.46	32.95	37.65	21.32	33.96	40.45	30.56	39.7	46.42	32.64	24.12	20.36
Merged-chr12-3360190-3	chr12	3360088	3360288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4944.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	77.93	58.86	50.77	43.44	58.09	83.1	38.2	49.57	77.69	94.9	67.84	44.8
Merged-chrX-13765884-3	chrX	13765787	13765987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 2 of 4)	Lx3C|LINE|L1	46034.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	23.42	26.91	36.51	33.78	32.73	37.0	29.9	32.75	30.49	28.62	60.3	22.56
Merged-chr2-181244131-3	chr2	181244017	181244217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2090.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	206.34	249.77	233.89	227.65	237.69	347.75	299.62	235.35	325.91	355.99	383.39	206.76
Merged-chr12-85596089-3	chr12	85595999	85596199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3006.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	50.88	28.17	43.35	30.97	57.68	49.54	28.57	43.96	73.17	67.28	67.33	47.3
Merged-chr8-84257286-3	chr8	84257178	84257378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026423)	promoter-TSS (NM_026423)	46.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	27.86	21.13	22.25	24.53	29.05	38.26	12.62	32.27	42.09	60.75	47.74	27.88
Merged-chr5-124540669-3	chr5	124540568	124540768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-123.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	104.18	80.99	76.44	69.18	97.78	116.65	64.77	73.49	101.1	138.08	89.44	61.09
Merged-chr6-15726650-3	chr6	15726540	15726740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	5979.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	19.79	23.64	22.82	22.12	32.32	64.28	43.18	44.72	55.86	39.67	42.21	25.37
Merged-chr3-137869592-3	chr3	137869486	137869686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	L1MB2|LINE|L1	1911.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	73.49	56.34	104.39	96.53	82.23	99.72	91.35	105.9	88.51	101.93	90.45	59.83
Merged-chr16-84967220-3	chr16	84967126	84967326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-4985.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	151.42	184.12	188.25	229.66	173.46	209.78	144.16	209.22	183.51	164.19	225.61	115.6
Merged-chr5-9101150-3	chr5	9101051	9101251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 1 of 4)	CpG	414.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	51.28	46.78	26.81	51.88	41.32	46.41	43.18	41.02	58.61	55.23	73.36	19.42
Merged-chr9-106367838-3	chr9	106367740	106367940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-792.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	177.67	162.74	185.4	193.46	164.87	215.11	121.24	166.68	244.09	233.98	298.47	133.45
Merged-chr8-94191295-3	chr8	94191164	94191364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	12175.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	141.33	129.29	173.42	139.56	160.37	188.77	121.57	147.51	188.82	174.23	205.01	118.73
Merged-chr8-68195581-3	chr8	68195426	68195626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81002.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	13.33	10.56	19.97	16.09	8.18	10.03	16.61	18.45	19.47	15.57	28.14	18.48
Merged-chr1-131659721-3	chr1	131659624	131659824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	21410.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	83.18	72.44	99.83	91.7	69.55	85.92	59.46	91.4	117.82	96.91	121.1	98.05
Merged-chr1-155050357-3	chr1	155050240	155050440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32924.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	138.91	119.98	123.79	148.41	171.41	198.49	128.22	147.28	185.87	189.29	212.55	134.7
Merged-chr17-47873645-3	chr17	47873512	47873712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028767, intron 13 of 16)	intron (NM_028767, intron 13 of 16)	-38921.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	55.32	53.32	45.64	39.82	47.46	64.28	27.57	38.24	51.53	55.23	49.75	34.77
Merged-chr19-53329423-3	chr19	53329340	53329540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	27.0	NM_001360345	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	86.41	93.82	88.99	76.02	87.96	97.21	86.03	86.8	132.76	118.5	139.19	64.85
Merged-chr15-6341660-3	chr15	6341584	6341784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	41895.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	41.99	39.99	49.06	50.68	38.05	44.84	31.22	47.69	42.68	37.16	51.76	33.52
Merged-chr12-37241763-3	chr12	37241676	37241876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178767, exon 1 of 13)	5' UTR (NM_178767, exon 1 of 13)	137.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	149.4	110.92	110.1	151.63	128.87	131.39	90.68	120.81	186.66	192.81	207.53	112.46
Merged-chr1-64191749-3	chr1	64191679	64191879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70390.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	30.28	21.63	22.25	23.73	29.46	64.28	35.87	46.6	49.76	38.66	32.66	18.8
Merged-chr6-120567678-3	chr6	120567572	120567772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12876.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	53.7	79.73	82.72	78.03	60.14	71.81	49.83	72.14	73.36	53.73	99.49	54.51
Merged-chr14-8099943-3	chr14	8099847	8100047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	1736.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	66.63	58.86	83.86	45.45	78.14	95.64	75.07	88.43	104.24	117.49	112.05	79.88
Merged-chr7-30423176-3	chr7	30423068	30423268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	-107.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	41.99	21.88	19.97	37.81	19.23	33.55	15.94	22.6	33.44	30.13	26.13	19.74
Merged-chr5-9100632-3	chr5	9100528	9100728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081029)	promoter-TSS (NM_001081029)	-109.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	93.28	83.51	83.86	84.46	88.78	91.25	73.08	110.44	97.95	68.79	113.56	50.44
Merged-chr15-5495309-3	chr15	5495207	5495407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	17.36	15.09	24.53	8.45	45.82	32.93	25.58	27.31	40.12	37.66	42.71	10.34
Merged-chr6-17635165-3	chr6	17635061	17635261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1849.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	28.27	32.95	30.23	34.99	45.0	57.07	34.21	40.4	77.89	74.31	81.9	46.36
Merged-chr5-124015975-3	chr5	124015890	124016090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16270.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	69.86	55.84	66.74	36.2	63.41	68.67	43.85	58.85	73.95	63.27	89.44	35.4
Merged-chrX-163251823-3	chrX	163251711	163251911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	100753.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	56.13	56.59	70.17	83.26	60.96	82.78	59.79	85.54	85.56	67.78	88.94	55.45
Merged-chr16-19768286-1	chr16	19768186	19768386	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159408, intron 4 of 4)	intron (NM_001159408, intron 4 of 4)	8052.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	4.85	1.26	2.85	4.83	4.91	5.02	9.63	9.76	2.95	5.02	7.54	3.76
Merged-chr8-79161603-3	chr8	79161477	79161677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	ORR1D2|LTR|ERVL-MaLR	87006.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	39.98	29.93	47.35	49.87	30.68	31.04	34.88	62.47	52.32	27.11	57.28	33.83
Merged-chr7-104401307-3	chr7	104401215	104401415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42669.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	34.32	30.43	27.95	27.35	40.91	63.34	29.56	41.33	30.68	24.6	53.77	20.99
Merged-chr9-60688069-3	chr9	60687970	60688170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145616)	promoter-TSS (NM_145616)	64.0	NM_001146046	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	94.08	76.46	103.82	86.88	101.87	130.13	47.5	90.06	122.54	127.03	106.02	54.82
Merged-chr16-57211283-3	chr16	57211204	57211404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 4 of 17)	(TC)n|Simple_repeat|Simple_repeat	-9833.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	43.61	44.27	39.36	34.99	47.46	47.04	61.78	31.4	53.5	54.23	43.72	47.3
Merged-chr19-5731789-3	chr19	5731659	5731859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020491)	promoter-TSS (NM_020491)	-27.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	33.11	34.96	41.07	21.32	30.68	43.27	21.59	25.96	52.32	48.2	40.7	41.98
Merged-chr4-117121236-3	chr4	117121125	117121325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024078, exon 6 of 7)	non-coding (NR_024078, exon 6 of 7)	4500.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	30.69	37.23	20.54	26.95	42.14	47.98	38.53	28.51	35.01	36.65	30.15	20.36
Merged-chr14-102922709-3	chr14	102922620	102922820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59912.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	60.17	61.62	87.85	107.39	81.41	74.0	52.15	107.55	92.05	89.88	90.45	64.85
Merged-chr19-37503214-3	chr19	37503132	37503332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37978.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	63.8	48.54	50.2	74.0	61.77	87.17	53.15	71.92	59.01	64.27	58.79	27.57
Merged-chr2-166786780-3	chr2	166786694	166786894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6973.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	18.98	17.86	15.97	21.72	20.46	33.87	10.3	19.29	30.88	28.12	34.17	21.3
Merged-chr6-57535654-3	chr6	57535556	57535756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-230.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	374.72	376.54	427.84	447.25	412.38	428.97	438.8	493.54	485.23	513.15	578.36	317.97
Merged-chr6-3463176-3	chr6	3463068	3463268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178899, intron 9 of 9)	intron (NM_178899, intron 9 of 9)	31330.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	38.36	37.48	24.53	55.5	47.87	42.96	50.16	51.56	61.96	56.24	67.84	40.1
Merged-chr12-79613862-4	chr12	79613703	79613903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	310930.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.27	7.29	10.84	6.84	13.09	7.84	2.66	3.87	12.39	18.58	19.6	11.9
Merged-chr9-120492617-3	chr9	120492516	120492716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	10.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	29.88	33.96	34.23	23.33	24.14	29.16	16.94	32.07	49.57	43.68	66.83	24.12
Merged-chr4-138262334-3	chr4	138262209	138262409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190978)	promoter-TSS (NM_001190978)	58.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	52.9	63.64	38.22	36.6	53.18	89.37	52.15	40.29	56.84	78.83	49.24	37.59
Merged-chr8-80338114-3	chr8	80338001	80338201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-155944.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	27.46	21.13	21.11	45.85	40.91	37.32	37.54	35.92	36.58	26.11	39.7	23.81
Merged-chr17-34981984-3	chr17	34981879	34982079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030597)	promoter-TSS (NM_030597)	125.0	NM_001204274	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	49.67	85.27	86.71	87.28	64.64	80.27	43.51	49.85	65.69	102.93	88.94	50.44
Merged-chr5-148551952-3	chr5	148551885	148552085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359201)	promoter-TSS (NM_001359201)	-100.0	NM_001359200	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	43.61	60.87	40.5	20.91	31.91	44.53	31.56	16.99	59.01	77.32	57.79	18.17
Merged-chr6-134072581-3	chr6	134072487	134072687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	36887.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	56.53	44.27	55.33	49.47	70.77	84.35	42.85	55.32	56.06	50.71	67.84	34.77
Merged-chr1-134196547-3	chr1	134196462	134196662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	3114.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	137.29	111.93	164.86	162.89	148.1	148.01	109.95	169.07	159.71	152.64	191.45	85.21
Merged-chr3-115729369-3	chr3	115729277	115729477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14322.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	45.23	28.17	36.51	45.05	50.73	77.14	35.87	67.6	67.66	73.31	70.85	35.71
Merged-chr11-89985408-3	chr11	89985304	89985504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316372, intron 4 of 4)	intron (NM_001316372, intron 4 of 4)	17490.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	21.4	17.61	15.97	16.89	66.27	60.83	60.46	48.39	41.89	57.24	38.69	26.94
Merged-chr1-178318777-4	chr1	178318591	178318791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-462.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	75.91	79.99	53.05	49.87	80.59	92.5	81.05	65.58	85.95	91.89	83.41	45.74
Merged-chr4-132215018-3	chr4	132214926	132215126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2770.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	27.86	28.93	35.94	27.75	34.36	29.79	23.25	38.22	23.21	32.13	34.17	35.4
Merged-chr11-103051481-2	chr11	103051380	103051580	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008707, intron 3 of 11)	intron (NM_008707, intron 3 of 11)	22937.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	1.51	0.0	1.21	69.96	77.77	50.82	64.4	30.88	46.19	41.2	20.99
Merged-chr10-111390109-3	chr10	111390011	111390211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83116.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	37.15	31.44	50.77	52.69	45.82	62.09	66.43	83.27	58.42	71.3	71.86	53.26
Merged-chr16-42897319-3	chr16	42897217	42897417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040402, intron 1 of 3)	intron (NR_040402, intron 1 of 3)	-10328.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	17.77	19.12	34.23	44.64	27.41	25.09	21.26	36.76	22.82	18.08	43.72	19.11
Merged-chr13-112130407-2	chr13	112130290	112130490	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	-158061.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.21	0.0	0.0	0.0	45.0	27.28	31.89	40.68	29.31	39.67	41.71	31.64
Merged-chr3-95651947-3	chr3	95651778	95651978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6843.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.27	11.07	6.85	2.41	6.14	15.37	7.31	6.76	16.92	11.05	10.55	8.77
Merged-chr14-13961177-3	chr14	13961044	13961244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359900, intron 1 of 8)	CpG	169.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	19.38	23.9	26.24	16.89	22.5	25.09	44.18	31.6	18.1	27.62	24.62	13.78
Merged-chr17-45767191-3	chr17	45767092	45767292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32686.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	20.59	14.09	57.05	22.93	43.77	37.63	38.53	49.29	56.45	38.66	71.86	34.46
Merged-chr19-17394027-3	chr19	17393935	17394135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-8.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	122.35	138.84	111.81	129.91	162.0	177.48	115.26	136.88	157.15	158.16	192.45	83.64
Merged-chr19-3929640-3	chr19	3929539	3929739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	77.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	51.28	53.58	50.2	34.59	56.05	61.15	49.83	43.32	45.63	44.69	47.74	26.0
Merged-chr8-76899189-3	chr8	76899066	76899266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	1455.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	48.86	43.01	42.21	39.42	77.32	73.69	66.43	85.68	71.2	82.85	90.95	49.18
Merged-chr5-65537775-3	chr5	65537662	65537862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310618, intron 1 of 4)	CpG	517.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	40.78	42.26	45.07	32.18	41.73	50.49	32.88	35.22	66.87	40.17	56.28	43.54
Merged-chr5-103732777-3	chr5	103732626	103732826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21436.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	35.94	30.69	25.1	37.0	21.68	38.57	19.27	18.67	34.62	43.18	55.78	26.0
Merged-chr16-91073696-3	chr16	91073594	91073794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4549.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	26.65	26.91	30.23	32.58	32.73	37.63	18.93	33.81	41.3	21.09	64.82	33.21
Merged-chr12-111444281-3	chr12	111444162	111444362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1601.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	36.34	35.21	65.6	55.1	64.64	106.3	95.0	82.68	97.36	67.78	115.57	43.86
Merged-chr6-50255058-3	chr6	50254942	50255142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018769, intron 1 of 9)	intron (NM_018769, intron 1 of 9)	6727.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	25.04	26.16	37.65	52.69	44.18	39.2	55.14	53.13	42.29	40.67	48.74	28.19
Merged-chr5-123377458-6	chr5	123377390	123377590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17308.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	8.08	11.07	11.41	5.23	7.77	8.15	8.3	10.46	18.69	17.57	15.58	15.35
Merged-chr9-106822771-4	chr9	106822588	106822788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015507, intron 1 of 22)	intron (NM_001015507, intron 1 of 22)	712.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	32.3	32.45	26.81	21.72	25.77	37.0	12.29	17.58	48.78	45.19	30.15	22.56
Merged-chr9-66126659-3	chr9	66126576	66126776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026635)	promoter-TSS (NM_026635)	65.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	132.44	113.19	117.51	108.19	149.32	160.86	107.96	98.47	134.34	142.6	152.25	95.55
Merged-chr17-46283036-3	chr17	46282924	46283124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252473)	promoter-TSS (NM_001252473)	2.0	NM_001252475	74094.0	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	70.26	41.25	50.2	24.94	55.64	80.9	33.88	27.93	67.86	64.77	82.41	31.01
Merged-chr14-63129180-3	chr14	63129086	63129286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6724.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	118.31	106.4	121.51	99.34	195.55	166.82	123.9	147.45	190.2	232.47	190.94	120.61
Merged-chr15-38300889-3	chr15	38300792	38300992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289471)	promoter-TSS (NM_001289471)	-181.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	207.55	252.03	187.11	179.78	269.19	339.29	242.82	232.21	345.97	352.48	396.96	200.49
Merged-chr1-136559014-3	chr1	136558923	136559123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65878.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	31.09	27.67	42.21	59.53	46.23	38.57	37.54	39.42	46.22	39.16	38.19	21.93
Merged-chr13-37959457-3	chr13	37959368	37959568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34740.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	41.99	43.51	72.45	68.37	58.91	66.79	38.53	59.33	46.62	75.32	79.39	43.86
Merged-chr8-84203645-3	chr8	84203553	84203753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4865.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	132.04	99.1	110.1	124.68	133.78	163.69	131.87	126.62	171.32	197.83	266.82	116.54
Merged-chr3-97206671-3	chr3	97206552	97206752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029933, intron 9 of 9)	intron (NM_029933, intron 9 of 9)	20712.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	31.9	34.96	26.24	34.59	19.64	39.2	15.28	32.92	36.98	23.6	45.22	39.16
Merged-chr11-69997327-3	chr11	69997231	69997431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291127)	promoter-TSS (NM_001291127)	-131.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	77.53	115.2	84.43	82.85	99.0	121.98	55.14	75.87	103.26	117.99	117.08	77.69
Merged-chr15-85634633-3	chr15	85634545	85634745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-52824.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	256.01	294.79	290.36	257.81	325.65	388.2	237.17	307.46	387.28	430.81	517.56	231.82
Merged-chr13-64180406-3	chr13	64180312	64180512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019986, intron 5 of 7)	C-rich|Low_complexity|Low_complexity	18546.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	27.05	34.71	35.37	19.71	16.36	31.36	28.23	29.94	23.8	27.62	28.64	17.86
Merged-chr13-55405625-3	chr13	55405506	55405706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	5958.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	41.99	34.21	21.68	43.84	29.86	58.32	24.58	35.89	48.58	47.7	51.76	39.78
Merged-chr2-167634605-3	chr2	167634530	167634730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2625.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	96.91	79.23	86.14	86.88	94.5	142.36	55.47	77.89	140.44	136.57	113.06	80.51
Merged-chr16-94969159-1	chr16	94969059	94969259	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	28537.0	NM_001025584	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.81	0.0	1.14	0.8	6.55	10.98	13.62	11.5	0.98	0.5	2.51	0.63
Merged-chr12-85670293-3	chr12	85670196	85670396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16424.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	31.5	28.93	45.64	27.75	20.46	33.24	27.57	20.27	44.84	29.12	36.68	15.98
Merged-chr7-81835604-3	chr7	81835507	81835707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6176.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	45.23	17.1	38.79	26.55	46.23	66.79	34.88	33.95	39.34	43.18	59.29	20.36
Merged-chr7-141269069-3	chr7	141268994	141269194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028069)	TTS (NM_028069)	-2670.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	66.63	39.99	84.43	70.79	75.28	52.37	53.81	71.52	65.5	72.81	114.57	53.26
Merged-chr17-64600888-5	chr17	64600786	64600986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-763.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	86.41	90.55	59.9	101.35	71.18	98.78	147.82	80.02	100.31	112.97	113.06	72.99
Merged-chr10-95564215-3	chr10	95564125	95564325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027722)	promoter-TSS (NM_027722)	-79.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	79.14	77.47	70.74	54.7	58.5	63.97	49.49	68.61	75.13	85.86	107.03	48.24
Merged-chr13-36074750-3	chr13	36074649	36074849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201358, intron 2 of 2)	MTD|LTR|ERVL-MaLR	42608.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	33.92	33.2	62.75	32.58	43.77	61.15	32.55	58.79	43.86	40.67	32.16	27.25
Merged-chr6-146686967-3	chr6	146686876	146687076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29758.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	21.0	17.1	31.38	29.36	30.68	34.49	10.96	44.97	53.7	29.12	67.33	33.21
Merged-chr7-48882503-3	chr7	48882453	48882653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-957.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	49.67	44.02	64.46	64.75	51.55	54.25	85.7	86.47	68.84	51.21	79.39	52.0
Merged-chr7-120835905-2	chr7	120835806	120836006	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6925.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	18.98	24.15	25.67	14.88	22.91	39.82	14.62	18.93	60.58	46.7	54.77	48.24
Merged-chr18-34954399-2	chr18	34954312	34954512	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-61.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	33.92	31.44	35.94	34.19	41.73	47.66	43.51	25.63	43.86	60.25	38.69	46.68
Merged-chr11-53891852-3	chr11	53891742	53891942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	-139.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	215.63	215.56	223.62	152.84	260.19	302.28	191.66	204.45	259.63	283.69	313.55	133.76
Merged-chr1-88287794-3	chr1	88287697	88287897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-10218.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	9.29	24.15	12.55	17.7	27.82	16.93	20.26	17.55	29.9	31.13	24.12	26.63
Merged-chr4-19838396-1	chr4	19838296	19838496	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028746, intron 2 of 3)	RMER19C|LTR|ERVK	19669.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	1.26	1.71	4.42	14.73	5.96	10.96	23.69	2.16	2.01	2.01	4.7
Merged-chr11-75051957-3	chr11	75051828	75052028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	14063.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	53.7	19.12	45.64	75.21	48.27	53.31	84.04	79.6	40.91	28.62	42.21	30.7
Merged-chr11-53926500-3	chr11	53926394	53926594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34791.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	42.4	25.4	33.09	28.56	31.09	44.84	23.92	29.16	31.27	33.64	37.69	20.05
Merged-chr2-131211023-3	chr2	131210919	131211119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110992, intron 1 of 1)	intron (NR_110992, intron 1 of 1)	659.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	26.65	54.08	54.76	27.35	40.09	70.24	41.19	31.93	79.27	63.77	54.27	35.71
Merged-chr7-142095357-3	chr7	142095264	142095464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-80.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	66.22	52.57	63.32	58.32	83.87	144.24	49.49	80.8	78.48	76.82	71.35	55.76
Merged-chr11-49712800-3	chr11	49712692	49712892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-70.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	144.56	110.67	122.65	95.72	145.23	142.68	82.71	126.65	156.56	164.19	200.99	90.85
Merged-chr11-3139508-2	chr11	3139409	3139609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15488.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	23.02	11.57	23.96	18.1	23.32	21.64	23.92	21.53	0.0	0.0	0.0	0.0
Merged-chr7-89338749-3	chr7	89338652	89338852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360745)	promoter-TSS (NM_001360745)	35.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	128.81	105.39	134.06	126.69	141.96	164.63	106.96	157.85	168.76	156.66	168.33	80.82
Merged-chr12-83520416-3	chr12	83520329	83520529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-37.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	75.51	75.46	88.42	79.23	80.18	109.12	58.79	98.8	93.82	87.87	130.65	59.52
Merged-chr11-4195774-3	chr11	4195615	4195815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8882.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	139.31	180.6	168.86	143.59	164.46	195.67	135.53	147.14	231.7	208.37	297.47	144.73
Merged-chr18-44828911-3	chr18	44828810	44829010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163013, exon 1 of 30)	exon (NM_001163013, exon 1 of 30)	245.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	52.09	57.35	40.5	65.16	71.18	76.83	73.74	75.14	88.9	63.27	114.57	63.28
Merged-chr14-77904385-3	chr14	77904282	77904482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178825, exon 1 of 7)	5' UTR (NM_178825, exon 1 of 7)	143.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	35.13	32.2	54.19	31.37	47.46	39.51	21.59	35.5	50.35	37.16	49.75	17.86
Merged-chr7-58844266-3	chr7	58844171	58844371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186069.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	23.42	14.34	30.8	34.99	47.05	54.25	65.11	91.04	33.04	29.62	28.64	20.05
Merged-chr3-88627736-3	chr3	88627643	88627843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	6349.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	33.92	30.69	50.77	28.15	38.46	34.81	26.91	41.55	43.07	43.18	57.79	24.43
Merged-chr4-128706752-3	chr4	128706644	128706844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18006.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	107.01	104.64	105.53	58.32	74.05	126.37	76.4	54.73	89.3	80.34	106.02	43.23
Merged-chr2-122630640-3	chr2	122630544	122630744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033256)	promoter-TSS (NM_001033256)	19.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	62.59	65.65	49.63	34.19	61.37	79.65	24.58	33.53	91.07	105.44	69.34	32.58
Merged-chr12-112633158-3	chr12	112633065	112633265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-11663.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	51.28	33.45	41.07	34.99	75.68	74.63	48.16	65.52	65.3	61.76	102.0	38.85
Merged-chr9-45095732-2	chr9	45095642	45095842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16559.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	39.17	16.85	35.94	27.35	24.96	41.71	31.89	35.78	8.26	1.0	5.02	1.88
Merged-chr16-33985545-3	chr16	33985444	33985644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 56 of 59)	intron (NM_177357, intron 56 of 59)	-18506.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	29.88	24.65	26.81	15.69	29.46	31.67	21.26	14.83	35.99	34.14	32.66	17.54
Merged-chr12-32379550-3	chr12	32379455	32379655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	766.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	52.9	55.84	41.07	55.91	52.77	73.69	59.79	40.01	69.63	46.7	77.38	41.35
Merged-chr10-69185541-3	chr10	69185420	69185620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23032.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	30.28	27.17	53.62	29.76	36.82	51.74	37.54	41.24	40.71	44.69	46.23	36.65
Merged-chr17-74717691-3	chr17	74717605	74717805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	-45.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	35.13	27.17	20.54	14.48	43.77	54.56	9.63	36.81	50.94	45.19	60.8	32.27
Merged-chr12-108275565-3	chr12	108275467	108275667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-150.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	171.61	158.97	151.74	168.12	93.68	95.95	59.46	68.66	74.54	63.27	128.13	38.22
Merged-chr6-145250353-3	chr6	145250239	145250439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-108.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	109.43	90.55	88.99	86.88	114.55	136.72	71.42	116.33	136.11	125.53	151.25	79.57
Merged-chr3-103802386-3	chr3	103802269	103802469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-760.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	41.19	35.47	56.48	52.69	54.0	57.38	36.87	59.92	52.91	49.71	67.84	36.97
Merged-chr10-25366909-3	chr10	25366808	25367008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	7110.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	126.79	99.86	154.59	113.02	121.91	160.86	98.32	158.05	148.7	130.55	188.43	79.57
Merged-chr7-110121817-3	chr7	110121723	110121923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-236.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	246.32	261.34	242.44	227.24	223.37	278.45	229.2	273.42	304.08	368.55	473.34	210.83
Merged-chr10-63122773-3	chr10	63122686	63122886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182992, intron 16 of 19)	intron (NM_182992, intron 16 of 19)	22630.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	39.57	29.93	29.09	41.02	45.82	51.11	24.91	39.84	53.3	41.67	49.24	20.99
Merged-chr7-35742433-2	chr7	35742333	35742533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12021.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	44.82	26.16	62.75	51.08	49.5	60.52	59.46	68.86	1.38	3.01	1.51	3.45
Merged-chr10-93488629-3	chr10	93488530	93488730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-138.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	77.53	64.39	93.55	80.84	126.82	162.74	114.6	143.72	54.68	47.2	69.34	31.33
Merged-chr8-78908082-1	chr8	78907982	78908182	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-86930.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.63	1.26	3.99	3.62	5.32	1.88	6.64	11.19	4.33	4.02	14.07	2.51
Merged-chr17-80172912-3	chr17	80172802	80173002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	34403.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	27.46	27.42	40.5	43.04	61.37	52.99	28.23	58.15	66.68	60.75	83.91	39.78
Merged-chr16-4375173-1	chr16	4375073	4375273	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	45325.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	6.06	0.25	12.55	5.63	11.45	5.96	13.29	15.39	3.15	2.01	1.0	1.88
Merged-chr13-12370120-3	chr13	12370050	12370250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25225.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	20.59	22.39	15.97	25.34	37.23	56.44	39.2	58.85	45.63	44.19	34.17	21.62
Merged-chr9-110459328-3	chr9	110459209	110459409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 1 of 9)	MER58B|DNA|hAT-Charlie	17385.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	69.86	45.02	76.44	85.27	43.77	47.04	55.14	77.47	51.93	40.67	71.86	55.76
Merged-chr15-77929035-3	chr15	77928915	77929115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	-21.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	147.79	110.42	116.94	130.71	167.73	167.76	113.6	127.94	183.12	180.76	201.5	122.8
Merged-chr10-81291739-3	chr10	81291633	81291833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282095)	promoter-TSS (NM_001282095)	-152.0	NM_001282095	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	41.59	34.21	18.83	33.38	38.05	40.14	20.26	30.62	44.84	59.75	35.17	35.09
Merged-chrX-10714414-1	chrX	10714314	10714514	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2951.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	2.42	5.79	6.28	8.04	3.27	4.7	2.33	8.02	19.08	7.03	9.55	9.08
Merged-chr1-72711281-3	chr1	72711173	72711373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	13.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	40.38	50.81	49.63	80.04	70.37	73.69	64.44	68.05	96.77	62.76	114.06	59.21
Merged-chr4-117545758-3	chr4	117545665	117545865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4559.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	77.93	103.13	81.58	94.52	119.87	119.47	129.55	120.11	133.55	78.83	151.25	84.27
Merged-chr10-80577636-5	chr10	80577557	80577757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_078477)	promoter-TSS (NM_078477)	-361.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	40.38	61.62	60.47	56.71	54.41	63.34	62.45	45.81	56.25	63.27	49.75	48.87
Merged-chr5-142448233-3	chr5	142448140	142448340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-15691.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	31.5	37.98	42.78	24.13	41.32	58.95	29.9	47.78	42.29	29.62	43.72	23.18
Merged-chr9-56104470-3	chr9	56104367	56104567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	14491.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	23.42	35.21	33.09	40.62	38.86	57.07	26.91	47.47	54.09	61.26	68.34	32.89
Merged-chr12-55443331-3	chr12	55443215	55443415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44490.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	30.28	19.87	63.89	32.18	35.18	50.8	38.53	30.08	33.44	25.61	48.24	27.25
Merged-chr1-134094025-3	chr1	134093924	134094124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14869.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	133.66	102.62	138.62	141.57	144.0	151.14	140.18	160.85	168.37	151.13	252.25	107.45
Merged-chrY-42512505-1	chrY	42512405	42512605	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-417818.0	NR_038299	100041346.0	Mm.426191	NR_038299	ENSMUSG00000101005	Gm20871	-	Sycp3 like Y-linked pseudogene	pseudo	2.42	1.51	4.56	0.0	21.68	27.28	21.26	1.57	0.0	0.5	0.0	0.0
Merged-chr1-190928569-3	chr1	190928454	190928654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	49.0	NM_021421	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	63.4	63.64	69.03	62.34	93.68	99.09	77.06	96.81	103.65	115.99	139.19	72.36
Merged-chr1-131095791-3	chr1	131095690	131095890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2053.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	26.65	33.96	51.91	31.77	56.46	56.44	70.75	70.74	36.98	43.68	57.28	36.97
Merged-chr17-26506211-3	chr17	26506121	26506321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013642, exon 4 of 4)	3' UTR (NM_013642, exon 4 of 4)	2251.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	71.07	68.42	70.17	83.26	84.28	69.93	81.05	77.92	70.22	101.93	122.1	49.18
Merged-chr15-79323619-3	chr15	79323527	79323727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4744.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	60.97	49.05	75.3	45.85	74.05	99.72	55.14	68.24	91.26	104.94	125.62	57.01
Merged-chr16-78576103-3	chr16	78575999	78576199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252440, intron 1 of 4)	intron (NM_001252440, intron 1 of 4)	589.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	19.38	30.43	22.25	15.28	20.46	27.91	18.93	14.97	32.85	37.16	27.64	26.63
Merged-chr10-119240543-2	chr10	119240451	119240651	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-496.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	53.3	44.27	60.47	59.93	56.87	72.12	42.52	78.5	101.88	92.39	127.13	67.98
Merged-chr4-3706789-3	chr4	3706694	3706894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-8170.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	40.38	35.47	50.2	36.6	45.41	47.66	31.56	37.49	35.21	45.19	54.27	36.97
Merged-chr14-67869356-3	chr14	67869273	67869473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-9628.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	44.42	52.57	64.46	61.94	97.37	77.45	41.52	90.31	45.43	49.71	63.31	32.89
Merged-chr7-64287592-3	chr7	64287491	64287691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-79.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	193.82	210.53	205.93	223.62	218.87	248.66	149.81	229.21	284.8	278.67	346.71	167.6
Merged-chr9-47744056-3	chr9	47744015	47744215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	74093.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	43.61	42.01	39.93	33.78	35.18	37.63	30.56	28.79	44.45	47.2	44.22	30.07
Merged-chr11-120467597-3	chr11	120467494	120467694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	6.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	153.04	150.67	136.91	125.89	164.05	172.47	103.31	129.06	162.46	180.26	166.82	92.1
Merged-chr3-37332358-3	chr3	37332268	37332468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16285.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	67.43	61.12	73.02	86.07	53.18	39.51	55.14	83.55	70.61	54.23	84.92	48.24
Merged-chr4-123425813-3	chr4	123425703	123425903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-13892.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	18.17	11.07	14.26	15.28	31.09	32.3	35.21	28.43	30.09	30.63	44.22	32.89
Merged-chr17-65884981-3	chr17	65884873	65885073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-50.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	294.37	316.42	333.72	342.27	329.33	383.81	362.73	385.66	395.34	365.03	587.9	237.46
Merged-chr16-32202840-3	chr16	32202735	32202935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23035.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	83.99	83.76	83.29	82.05	85.91	130.76	59.46	74.41	109.75	101.43	119.59	66.41
Merged-chr11-54954292-3	chr11	54954194	54954394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271456, intron 1 of 18)	intron (NM_001271456, intron 1 of 18)	8646.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	24.63	30.18	18.83	8.04	27.82	72.12	20.93	14.24	45.43	51.21	34.17	8.46
Merged-chr1-191280886-3	chr1	191280806	191281006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37212.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	65.41	59.11	50.2	35.8	104.32	116.02	81.71	75.17	84.18	78.83	84.92	41.98
Merged-chr9-45084680-2	chr9	45084584	45084784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	5501.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	23.02	24.9	47.35	26.55	36.0	26.03	29.9	34.57	5.11	5.02	7.03	7.21
Merged-chr7-35056130-1	chr7	35056030	35056230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009884, intron 1 of 1)	CpG	436.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	24.63	19.87	27.38	18.5	33.14	36.69	20.26	23.24	27.73	35.65	42.21	25.37
Merged-chr1-80402145-3	chr1	80402028	80402228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43804.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	16.96	31.94	40.5	39.42	42.14	24.15	21.92	45.73	37.76	31.13	62.31	37.59
Merged-chr18-56756297-3	chr18	56756236	56756436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48523.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	13.73	21.88	24.53	18.9	36.82	24.77	23.92	28.23	47.6	44.69	62.31	33.83
Merged-chr7-110062071-1	chr7	110061971	110062171	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009281, intron 1 of 15)	CpG	369.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	47.65	34.71	42.21	33.78	40.5	44.84	46.84	31.6	43.47	44.69	59.8	37.91
Merged-chr15-95797370-3	chr15	95797274	95797474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6531.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	32.3	26.41	35.37	43.04	36.41	35.12	28.9	27.67	36.78	22.59	46.73	23.18
Merged-chr2-91710458-3	chr2	91710360	91710560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178724)	promoter-TSS (NM_178724)	132.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	45.23	36.97	35.37	32.58	33.55	43.59	44.51	43.49	52.12	43.18	51.25	25.06
Merged-chr1-23922416-3	chr1	23922325	23922525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-44.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	67.84	47.29	41.64	30.16	87.96	82.78	46.17	58.21	90.48	82.85	93.96	27.25
Merged-chr17-83276434-5	chr17	83276327	83276527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	61144.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	34.73	55.08	47.92	33.78	38.05	38.26	58.13	43.12	48.39	67.28	57.79	34.77
Merged-chr11-96862108-3	chr11	96861999	96862199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019877)	TTS (NM_019877)	11706.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	72.68	54.58	54.19	57.51	86.32	98.78	44.51	63.28	98.34	102.93	76.88	47.93
Merged-chr4-33290300-3	chr4	33290180	33290380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20031.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	51.69	62.88	35.37	44.64	40.5	58.64	44.51	34.4	77.3	67.28	75.37	33.83
Merged-chr9-66511848-3	chr9	66511741	66511941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2752.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	149.4	98.35	126.07	90.49	135.41	143.62	101.31	132.98	167.58	140.59	165.32	110.27
Merged-chr10-76442858-3	chr10	76442770	76442970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282992)	promoter-TSS (NM_001282992)	42.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	198.26	212.54	236.17	269.47	245.05	313.26	233.18	273.84	254.32	265.61	365.81	174.49
Merged-chr13-9873616-3	chr13	9873530	9873730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108309.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	123.56	130.79	175.13	159.27	148.91	176.86	176.71	221.1	217.14	201.85	320.08	142.85
Merged-chr3-14611356-3	chr3	14611250	14611450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347206)	promoter-TSS (NM_001347206)	-94.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	211.99	201.98	251.57	244.54	311.74	357.16	228.53	369.81	318.24	297.75	516.55	196.1
Merged-chr8-111145680-3	chr8	111145580	111145780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040363)	promoter-TSS (NR_040363)	-182.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	95.7	63.64	64.46	73.2	71.59	96.58	43.18	57.62	95.79	107.95	90.95	65.79
Merged-chr11-109611772-3	chr11	109611665	109611865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-376.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	200.69	210.78	211.64	213.17	240.14	275.63	176.05	228.25	303.29	298.75	378.37	203.62
Merged-chr15-81694138-3	chr15	81694055	81694255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	3132.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	70.66	42.76	27.38	30.97	41.32	54.56	20.59	34.99	37.76	40.17	42.71	23.49
Merged-chr4-34526911-3	chr4	34526805	34527005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23710.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	41.19	33.45	43.35	49.87	61.37	34.81	21.92	63.45	66.68	44.19	35.68	40.1
Merged-chr2-163662872-3	chr2	163662766	163662966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	B3|SINE|B2	4408.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	44.82	32.7	39.36	41.43	38.46	33.24	24.25	30.14	40.52	34.14	37.18	20.36
Merged-chr2-66125139-3	chr2	66125054	66125254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	-361.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	34.32	20.12	31.38	27.75	36.41	39.51	41.52	56.1	41.89	38.16	40.2	35.09
Merged-chr16-65450871-3	chr16	65450763	65450963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69766.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	65.01	57.6	47.35	29.76	63.41	76.2	36.87	58.29	93.03	85.36	79.39	40.1
Merged-chr8-72169407-3	chr8	72169303	72169503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023126, intron 2 of 7)	intron (NM_023126, intron 2 of 7)	8203.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	65.41	74.45	73.02	35.39	60.14	123.86	62.12	56.55	86.94	65.27	105.52	44.48
Merged-chr11-22512612-3	chr11	22512456	22512656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153596, exon 1 of 4)	exon (NM_153596, exon 1 of 4)	273.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	31.09	44.52	42.78	31.37	44.18	57.07	71.42	45.5	50.55	43.68	55.78	38.85
Merged-chr9-5298616-3	chr9	5298527	5298727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009807, exon 1 of 10)	5' UTR (NM_009807, exon 1 of 10)	110.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	41.59	31.19	42.78	41.83	50.73	42.65	47.17	69.79	67.66	65.27	57.28	35.4
Merged-chr19-44363626-3	chr19	44363519	44363719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30293.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	69.05	68.42	65.6	63.15	54.0	102.85	61.12	57.36	88.31	104.44	93.46	47.93
Merged-chr4-134930838-3	chr4	134930733	134930933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-147.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	142.54	163.49	126.64	163.7	143.6	196.3	98.32	103.68	180.95	189.8	158.78	90.85
Merged-chr12-21369178-3	chr12	21369063	21369263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	(CAGA)n|Simple_repeat|Simple_repeat	4469.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	31.5	25.66	25.1	22.93	26.59	30.1	22.26	27.48	45.43	37.16	41.71	26.0
Merged-chr3-88058405-3	chr3	88058304	88058504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144897)	promoter-TSS (NM_144897)	91.0	NM_144897	246703.0	Mm.205996	NM_144897	ENSMUSG00000028070	Naxe	AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37	NAD(P)HX epimerase	protein-coding	23.82	30.94	15.97	38.61	40.91	39.51	51.49	36.42	35.4	47.2	32.66	36.34
Merged-chr5-99381790-3	chr5	99381681	99381881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-128854.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	115.89	78.48	92.41	86.47	120.28	108.18	71.75	116.33	129.81	141.09	142.2	82.39
Merged-chr4-43044888-3	chr4	43044794	43044994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1326.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	45.63	50.31	53.05	60.33	54.0	54.88	36.54	74.94	61.76	37.16	97.48	45.74
Merged-chr2-130274355-3	chr2	130274246	130274446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024193)	promoter-TSS (NM_024193)	-66.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	161.52	144.38	130.06	109.0	144.0	181.87	66.77	95.1	200.82	154.65	179.89	96.8
Merged-chr16-23984406-3	chr16	23984290	23984490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3107.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	26.65	16.85	26.24	22.52	25.77	29.48	9.63	24.39	37.17	28.12	30.15	24.12
Merged-chr7-45054330-3	chr7	45054210	45054410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022999, intron 6 of 6)	intron (NM_022999, intron 6 of 6)	-1429.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	110.24	146.39	151.74	141.17	151.78	155.85	127.89	153.87	185.48	174.23	282.9	109.64
Merged-chr4-94614495-3	chr4	94614393	94614593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290568)	promoter-TSS (NM_001290568)	2.0	NM_026319	67694.0	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	64.2	33.2	73.59	39.01	78.14	65.85	49.49	71.8	95.79	72.81	110.55	40.72
Merged-chr8-9977762-3	chr8	9977666	9977866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	49.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	75.11	74.96	70.74	71.59	97.37	91.88	88.69	86.83	100.7	120.0	123.11	66.1
Merged-chr6-90713328-3	chr6	90713232	90713432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	3197.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	119.93	118.97	138.62	144.39	142.78	134.21	142.5	219.08	169.15	158.16	204.01	122.17
Merged-chr5-77265995-6	chr5	77265900	77266100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011263, intron 1 of 3)	CpG	506.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	14.94	20.12	19.97	12.07	23.73	20.07	35.21	27.56	26.16	30.63	24.62	27.25
Merged-chr17-42943635-3	chr17	42943526	42943726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67202.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	25.04	26.91	39.36	30.16	21.68	37.63	20.59	31.79	46.22	37.16	46.73	23.49
Merged-chr8-111933790-3	chr8	111933692	111933892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033321)	promoter-TSS (NM_001033321)	21.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	49.67	41.5	61.04	50.27	75.28	100.34	61.45	98.66	118.01	70.29	150.74	70.17
Merged-chr7-96546132-3	chr7	96546039	96546239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204175.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	89.24	31.44	54.19	76.42	49.91	40.14	61.45	69.25	22.03	21.59	49.24	32.58
Merged-chr1-88267278-3	chr1	88267186	88267386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	2122.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	28.67	27.92	39.36	33.78	54.82	42.96	49.49	59.44	74.94	64.77	103.01	51.38
Merged-chr1-91034328-3	chr1	91034234	91034434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	PB1D9|SINE|Alu	-19110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	21.4	23.14	26.24	21.72	44.18	39.51	23.58	29.8	45.04	34.14	49.75	20.36
Merged-chr10-75635838-3	chr10	75635739	75635939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001162913)	TTS (NM_001162913)	8169.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	17.77	19.12	25.67	27.35	24.55	25.71	18.6	23.52	35.6	19.08	24.62	16.92
Merged-chr2-18064562-3	chr2	18064457	18064657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-28.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	89.24	65.9	72.45	66.36	69.14	79.02	69.42	88.65	97.95	94.9	145.22	74.24
Merged-chr12-98674880-4	chr12	98674772	98674972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46730.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	27.05	26.41	25.1	43.44	21.68	50.49	32.55	27.93	21.05	14.06	19.09	13.47
Merged-chr11-110430804-3	chr11	110430713	110430913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	31711.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	53.7	52.32	49.63	32.98	44.18	63.97	31.22	35.24	77.89	69.29	69.34	43.23
Merged-chr2-10591329-3	chr2	10591245	10591445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001198808, exon 23 of 23)	3' UTR (NM_001198808, exon 23 of 23)	73190.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	32.71	41.75	54.76	81.24	58.09	60.52	69.09	95.24	56.25	66.78	94.47	52.0
Merged-chr6-136804418-3	chr6	136804329	136804529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	2.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	134.87	119.22	131.78	136.75	100.23	133.27	93.34	90.25	93.62	101.43	124.11	80.51
Merged-chr13-17944260-3	chr13	17944163	17944363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019491)	promoter-TSS (NM_019491)	-46.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	63.8	50.81	48.49	51.88	59.73	63.97	54.48	83.97	94.8	88.87	143.71	70.48
Merged-chr11-70442094-3	chr11	70441980	70442180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3825.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	66.22	49.05	57.05	34.99	65.05	103.48	34.21	52.29	78.28	90.88	61.81	35.09
Merged-chr4-83328221-3	chr4	83328132	83328332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4043.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	17.36	28.17	46.78	45.05	18.82	18.5	26.57	37.18	48.58	31.13	47.23	27.57
Merged-chr5-136136123-3	chr5	136136052	136136252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	7.0	NM_001359417	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	58.55	47.79	54.19	46.66	49.5	53.31	30.89	45.0	48.19	34.65	63.31	26.63
Merged-chr18-70622554-3	chr18	70622456	70622656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	54264.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	116.29	101.11	110.1	162.89	131.73	115.08	134.53	135.0	151.25	159.17	162.8	91.79
Merged-chr4-134854343-1	chr4	134854243	134854443	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-998.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	30.28	26.66	21.68	19.31	28.64	38.26	24.91	22.04	44.06	51.21	43.72	22.87
Merged-chr12-95292815-1	chr12	95292715	95292915	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-399411.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.63	5.79	3.42	10.46	19.23	25.4	25.24	31.74	13.57	8.03	4.02	3.13
Merged-chr4-24496360-3	chr4	24496263	24496463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-88.0	NR_149739	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	102.16	92.31	105.53	133.53	132.14	124.17	137.52	173.55	155.78	165.69	240.19	111.84
Merged-chr16-31757853-3	chr16	31757755	31757955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	3505.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	29.88	26.41	19.4	15.28	31.91	40.76	19.93	21.2	33.83	30.63	23.62	15.35
Merged-chr7-78783011-3	chr7	78782916	78783116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026498)	promoter-TSS (NM_026498)	73.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	30.69	34.21	26.81	24.13	40.91	32.93	47.83	36.17	44.06	34.14	61.81	29.76
Merged-chr10-44604923-3	chr10	44604771	44604971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146123.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	11.31	8.3	22.25	23.33	25.77	20.38	30.89	35.5	23.01	16.57	19.6	12.53
Merged-chr17-3156352-3	chr17	3156257	3156457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	41385.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	77.12	87.03	89.56	71.59	103.5	93.44	90.02	98.19	95.59	91.38	139.69	58.27
Merged-chr8-84979367-1	chr8	84979267	84979467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008416)	promoter-TSS (NM_008416)	-619.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	35.13	18.86	26.24	22.12	35.59	37.63	22.92	28.46	34.22	29.62	34.67	25.69
Merged-chr8-94183353-3	chr8	94183251	94183451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4262.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	104.99	64.64	82.72	85.27	96.14	95.64	80.39	123.36	108.97	103.43	116.58	77.69
Merged-chr6-113238666-3	chr6	113238568	113238768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362185, intron 1 of 16)	intron (NM_001362185, intron 1 of 16)	825.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	88.43	94.32	86.71	47.06	67.91	110.38	60.46	50.97	70.41	63.77	65.83	33.83
Merged-chr5-124014983-3	chr5	124014869	124015069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17291.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	83.59	73.95	106.68	82.05	82.23	86.55	80.39	87.06	101.1	65.78	89.44	47.62
Merged-chr11-72608485-3	chr11	72608395	72608595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025985, intron 1 of 5)	CpG	1234.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	83.18	65.65	73.02	72.8	93.68	79.96	63.44	71.36	113.88	71.3	85.92	60.46
Merged-chr3-96301349-2	chr3	96301252	96301452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7383.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	22.21	22.64	23.96	21.72	18.0	23.83	15.61	24.11	34.81	25.61	35.17	33.83
Merged-chr17-34121205-5	chr17	34121105	34121305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 1 of 12)	CpG-6274	542.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	12.11	39.99	15.4	29.76	38.05	51.74	41.52	26.89	66.09	81.34	61.3	45.74
Merged-chr10-128373481-3	chr10	128373378	128373578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3441.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	162.73	127.02	201.37	194.66	197.19	223.58	158.45	223.88	236.81	229.46	279.88	166.97
Merged-chr6-30509753-3	chr6	30509636	30509836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	37.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	59.36	65.15	77.58	51.08	90.0	90.0	41.19	56.3	104.24	84.86	117.08	62.34
Merged-chr1-184845923-3	chr1	184845807	184846007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-60.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	142.94	129.54	181.98	150.82	157.1	192.85	126.89	201.67	187.25	184.77	228.13	118.41
Merged-chr19-16323143-3	chr19	16323049	16323249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-8145.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	91.66	84.51	114.66	117.04	42.96	56.76	21.92	57.9	41.89	63.77	79.39	47.3
Merged-chr16-70326793-3	chr16	70326703	70326903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	L1MD2|LINE|L1	12854.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	16.56	15.85	24.53	15.69	24.96	22.58	17.61	40.71	56.84	36.65	63.31	25.69
Merged-chr6-115808628-3	chr6	115808529	115808729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028546)	promoter-TSS (NR_028546)	114.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	44.42	51.06	31.95	34.59	40.91	41.08	49.83	31.21	48.39	51.72	40.7	29.45
Merged-chr5-95918649-1	chr5	95918549	95918749	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38290.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	1.21	0.75	9.7	2.41	29.05	17.87	21.59	16.63	4.33	6.53	9.55	6.89
Merged-chr11-70803069-3	chr11	70802968	70803168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	9493.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	26.25	14.34	31.38	22.93	45.41	36.37	18.6	32.89	36.58	43.18	60.3	31.33
Merged-chr11-60699688-3	chr11	60699559	60699759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-31.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	28.27	32.2	14.83	22.93	36.41	28.54	32.55	28.4	38.35	39.16	37.69	35.4
Merged-chr2-155357503-3	chr2	155357424	155357624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004721)	promoter-TSS (NM_001004721)	-100.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	61.78	66.65	77.58	70.38	71.18	107.24	38.53	80.1	101.1	79.33	102.51	57.33
Merged-chr2-18898119-3	chr2	18898022	18898222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-96304.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	127.2	112.68	130.63	97.73	105.14	81.22	84.37	122.38	129.22	93.89	121.1	48.24
Merged-chr8-126497747-3	chr8	126497656	126497856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22691.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	97.31	71.69	86.14	83.66	114.55	133.27	74.07	113.38	100.11	94.9	115.07	72.68
Merged-chr2-90515152-3	chr2	90515044	90515244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-35970.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	22.61	35.47	34.23	14.08	47.87	75.88	48.83	35.24	36.39	53.73	46.23	27.25
Merged-chr14-20731433-3	chr14	20731349	20731549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	3113.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	83.99	80.49	119.8	115.83	99.41	128.88	72.08	141.0	124.5	138.08	165.32	98.99
Merged-chr13-60673138-3	chr13	60673016	60673216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70905.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	258.03	259.07	278.95	292.8	297.01	368.45	260.09	330.67	333.19	351.98	473.84	216.78
Merged-chr1-91074805-3	chr1	91074695	91074895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	21351.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	58.55	43.51	80.43	81.24	77.32	106.93	99.32	109.54	128.44	95.9	158.78	68.29
Merged-chr13-113508509-3	chr13	113508428	113508628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5684.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	26.65	31.69	35.94	43.84	43.77	33.87	42.19	57.81	42.68	38.16	51.76	31.33
Merged-chr7-44849085-3	chr7	44848978	44849178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	1.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	212.8	200.72	187.11	159.67	211.92	279.39	140.51	154.15	232.88	306.79	296.46	157.26
Merged-chr5-139781642-2	chr5	139781537	139781737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5959.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	52.9	38.23	71.31	61.94	62.59	50.8	50.49	71.47	0.2	0.0	0.5	0.63
Merged-chr1-79848887-3	chr1	79848769	79848969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	9796.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	64.2	35.47	51.91	88.48	67.5	70.24	75.07	92.22	79.86	61.26	119.09	54.2
Merged-chr4-135070014-3	chr4	135069910	135070110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50635.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	58.15	55.34	87.28	86.88	61.37	79.02	82.38	65.33	65.89	59.25	97.48	43.86
Merged-chr10-24930368-3	chr10	24930280	24930480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2910.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	36.75	29.43	78.15	80.84	65.46	47.66	110.95	117.9	68.45	83.85	95.47	75.5
Merged-chr9-21092070-3	chr9	21091965	21092165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027911)	promoter-TSS (NM_027911)	-57.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	119.12	111.18	132.92	109.4	157.1	174.66	84.37	145.12	157.94	168.71	256.77	92.41
Merged-chr17-39848517-4	chr17	39848459	39848659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	5562.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	851.61	1152.0	819.18	770.21	272.05	333.96	243.15	185.8	246.25	287.2	268.83	395.03
Merged-chr7-100862695-2	chr7	100862605	100862805	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	708.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	11.31	18.61	5.13	5.63	17.18	15.68	13.62	6.98	17.11	20.08	19.6	13.78
Merged-chr5-88981807-3	chr5	88981718	88981918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-46148.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	61.38	56.59	89.56	84.06	62.18	110.06	118.92	121.88	71.4	77.32	120.09	70.17
Merged-chr17-56609874-3	chr17	56609782	56609982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153152)	promoter-TSS (NM_153152)	-111.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	75.91	54.83	79.29	52.69	82.23	93.13	69.76	78.17	91.46	86.86	136.68	62.65
Merged-chr11-50212135-3	chr11	50212028	50212228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1308.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	40.78	25.66	42.21	24.94	76.09	52.05	21.92	56.55	39.53	71.3	48.74	32.27
Merged-chr4-99177157-3	chr4	99177042	99177242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16792.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	27.86	24.4	41.64	24.53	19.64	40.14	24.25	54.08	29.31	19.58	42.71	15.66
Merged-chr11-54787708-3	chr11	54787604	54787804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-1.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	101.76	95.08	73.59	103.37	114.55	116.96	70.42	79.6	119.0	121.01	124.11	87.4
Merged-chr10-94591765-3	chr10	94591657	94591857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172051)	TTS (NM_172051)	-5558.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	28.27	24.65	30.23	34.59	35.18	38.26	26.57	48.84	33.44	33.14	53.26	27.88
Merged-chr18-77938391-3	chr18	77938280	77938480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-87.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	103.37	104.89	73.59	72.8	113.32	115.39	68.1	85.77	121.95	126.03	112.05	68.61
Merged-chr10-17624347-3	chr10	17624258	17624458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98870.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	32.3	20.37	29.09	31.37	31.09	35.75	17.94	34.43	33.04	27.11	49.24	12.22
Merged-chr13-98890997-3	chr13	98890895	98891095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048267)	promoter-TSS (NM_001048267)	47.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	28.67	27.17	30.8	16.89	18.41	51.74	26.91	32.69	28.52	33.64	35.17	20.05
Merged-chr6-134640968-3	chr6	134640856	134641056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	16.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	133.66	100.86	147.75	141.17	141.96	129.51	85.37	140.97	151.45	124.02	222.6	92.41
Merged-chr8-94838385-3	chr8	94838292	94838492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026452)	promoter-TSS (NM_026452)	-25.0	NM_026452	67914.0	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	107.01	85.52	118.65	104.17	114.14	141.73	88.69	103.99	102.67	107.95	153.26	78.63
Merged-chr11-114669108-3	chr11	114669017	114669217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048058, intron 2 of 3)	CpG-2790	336.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	26.65	21.38	32.52	24.53	27.82	47.98	16.94	27.08	46.42	49.21	49.75	31.01
Merged-chr2-84618843-3	chr2	84618761	84618961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 5 of 18)	MIRc|SINE|MIR	30619.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	27.46	16.85	12.55	18.1	12.27	32.61	28.9	27.17	21.05	22.59	23.62	15.04
Merged-chr8-67950436-3	chr8	67950323	67950523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	24151.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	23.82	29.93	39.36	47.86	40.5	40.45	30.56	37.85	31.67	34.65	37.18	26.63
Merged-chr2-30472141-3	chr2	30472028	30472228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030244)	TTS (NM_030244)	2071.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	46.03	31.44	41.64	45.45	57.27	59.27	35.87	53.07	52.32	43.68	65.32	37.59
Merged-chr11-74830833-3	chr11	74830718	74830918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-106.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	91.26	76.21	92.98	51.88	115.37	116.65	50.16	86.02	119.78	148.62	133.66	78.94
Merged-chrX-164028113-3	chrX	164028015	164028215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181315)	promoter-TSS (NM_181315)	-105.0	NM_181315	56078.0	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	46.84	39.74	45.07	52.69	127.23	150.51	85.37	151.96	75.72	66.28	82.41	35.09
Merged-chr1-86479290-3	chr1	86479195	86479395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47262.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	88.03	55.59	67.88	67.97	75.28	94.07	28.57	88.37	91.85	77.32	95.97	57.01
Merged-chr3-88177683-3	chr3	88177599	88177799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	86.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	157.88	153.94	149.46	133.93	158.32	198.49	93.67	140.94	172.69	205.86	191.45	128.75
Merged-chr2-131478461-3	chr2	131478380	131478580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13382.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	28.67	30.94	45.07	22.93	36.41	41.08	28.23	35.72	47.21	48.7	45.73	26.31
Merged-chr7-102250184-2	chr7	102250023	102250223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-5.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	36.75	38.23	70.17	29.36	38.05	45.78	28.23	43.26	61.37	83.85	89.94	47.93
Merged-chr9-14784581-3	chr9	14784420	14784620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310728)	promoter-TSS (NM_001310728)	53.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	37.55	54.58	42.78	55.5	71.18	60.52	50.49	52.29	101.69	88.87	141.2	49.18
Merged-chr11-120991337-3	chr11	120991255	120991455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139059)	promoter-TSS (NM_139059)	-22.0	NM_027874	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	34.32	23.39	18.83	20.51	23.73	38.57	11.29	17.02	55.07	41.67	31.66	35.4
Merged-chrX-73921906-3	chrX	73921806	73922006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310538)	promoter-TSS (NM_001310538)	38.0	NM_001310538	56292.0	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	26.65	25.66	44.5	26.95	39.68	49.86	35.54	38.58	39.34	39.67	51.76	22.87
Merged-chr7-4503965-3	chr7	4503858	4504058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011618)	TTS (NM_011618)	-2278.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	20.19	21.63	29.09	16.49	49.91	23.83	28.23	46.96	31.67	21.09	22.61	15.98
Merged-chr11-116131121-3	chr11	116131041	116131241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-13.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	78.34	45.02	58.19	55.91	47.46	41.71	35.87	64.07	54.48	83.35	85.42	54.2
Merged-chr5-144248387-3	chr5	144248279	144248479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	3942.0	NM_001163709	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	35.94	30.18	39.36	32.18	56.05	43.59	48.16	43.35	46.03	45.69	38.19	35.09
Merged-chrX-101532635-3	chrX	101532527	101532727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290729)	promoter-TSS (NM_001290729)	-108.0	NM_001290729	270627.0	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	145.37	111.18	150.6	121.06	132.55	153.65	109.28	148.71	144.37	142.1	139.19	85.21
Merged-chr5-137600745-3	chr5	137600645	137600845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254762)	promoter-TSS (NM_001254762)	-37.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	53.3	39.24	54.19	37.81	62.59	56.44	24.58	38.5	96.77	73.31	84.92	57.95
Merged-chr2-120567638-3	chr2	120567549	120567749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-22.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	98.93	79.23	95.84	121.46	86.73	159.92	66.43	97.46	124.11	126.03	163.31	83.02
Merged-chr11-69411319-3	chr11	69411224	69411424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	2351.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	44.42	52.82	36.51	39.42	38.46	51.11	23.92	36.79	63.53	61.26	61.81	35.4
Merged-chr7-19933672-3	chr7	19933574	19933774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12531.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	32.3	24.15	59.9	39.01	40.09	32.93	47.83	47.22	40.12	39.16	61.81	36.97
Merged-chr14-31129050-3	chr14	31128958	31129158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-128.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	180.9	175.57	152.88	154.85	193.1	205.7	116.92	172.01	196.88	218.42	221.09	132.83
Merged-chr8-77483865-3	chr8	77483762	77483962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-33194.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	103.37	105.39	137.48	164.1	92.46	73.38	87.69	131.08	93.43	90.38	116.58	60.15
Merged-chr6-3201487-3	chr6	3201378	3201578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87041.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	152.63	162.74	97.55	121.87	31.91	30.1	26.57	27.22	21.64	34.65	29.14	26.0
Merged-chr19-53119457-3	chr19	53119359	53119559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20984.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	23.82	18.36	32.52	30.16	26.18	24.46	18.27	29.78	36.58	36.15	38.69	34.77
Merged-chr13-67360598-3	chr13	67360513	67360713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038651)	promoter-TSS (NM_001038651)	-41.0	NM_001038651	629016.0	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	58.15	49.8	46.78	76.82	58.09	61.46	38.53	72.34	82.02	82.85	101.5	46.05
Merged-chr3-94954025-3	chr3	94953920	94954120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017395)	promoter-TSS (NM_017395)	-88.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	168.79	171.04	230.46	164.9	196.78	233.61	153.8	197.66	220.49	202.35	246.72	147.86
Merged-chr13-20788178-3	chr13	20788071	20788271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5942.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	51.28	51.31	66.17	43.04	89.18	73.69	77.4	84.34	100.7	94.4	115.07	74.87
Merged-chr17-35994464-3	chr17	35994345	35994545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-59.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	42.8	36.47	30.8	25.34	49.5	40.45	14.62	29.13	44.45	32.64	61.3	32.89
Merged-chr16-73770781-3	chr16	73770682	73770882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	571285.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	29.88	29.68	22.82	30.97	65.05	42.02	50.16	56.07	74.94	78.83	90.45	40.72
Merged-chr14-14801000-3	chr14	14800907	14801107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19808.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	24.63	26.41	43.35	47.46	44.18	36.37	23.25	55.91	41.89	19.58	40.7	23.49
Merged-chr12-35799446-3	chr12	35799348	35799548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104330.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	51.69	42.51	43.93	38.61	49.91	73.38	95.0	55.21	35.6	36.65	41.2	23.18
Merged-chr8-84207973-3	chr8	84207870	84208070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029741)	promoter-TSS (NR_029741)	-548.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	70.66	77.72	66.74	74.41	116.59	122.61	61.78	71.8	95.59	112.47	117.08	48.56
Merged-chr8-120322013-3	chr8	120321975	120322175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93845.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	27.46	19.87	19.97	19.31	12.68	27.59	16.28	27.0	38.75	34.14	18.09	18.17
Merged-chr6-113379486-3	chr6	113379394	113379594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170485, intron 1 of 3)	intron (NM_001170485, intron 1 of 3)	1381.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	33.11	49.55	26.24	27.35	26.18	34.49	21.92	28.15	31.08	22.09	45.22	23.18
Merged-chr4-141547528-3	chr4	141547412	141547612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	1350.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	27.05	17.86	32.52	15.28	77.73	95.01	66.1	67.71	39.93	31.13	40.2	29.13
Merged-chr16-36997850-3	chr16	36997747	36997947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-7380.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	36.34	26.91	35.37	9.65	24.14	47.35	22.92	29.78	39.53	46.19	49.75	22.87
Merged-chr7-121446432-3	chr7	121446326	121446526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	54130.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	37.96	58.86	38.22	85.27	57.68	51.11	58.79	64.54	58.22	33.14	84.42	38.22
Merged-chr17-34119375-3	chr17	34119262	34119462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	538.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	121.54	137.33	124.93	103.77	124.78	188.46	70.42	73.26	152.83	210.38	108.03	91.16
Merged-chr2-18027579-3	chr2	18027469	18027669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028376, exon 2 of 2)	non-coding (NR_028376, exon 2 of 2)	320.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	56.13	36.72	38.79	36.2	46.64	44.53	39.2	59.55	56.25	51.21	87.93	36.03
Merged-chr2-155826695-3	chr2	155826600	155826800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010579, exon 1 of 6)	5' UTR (NM_010579, exon 1 of 6)	225.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	67.03	77.97	85.0	90.09	52.37	39.82	26.91	48.34	96.57	70.29	94.47	68.61
Merged-chr7-6331336-3	chr7	6331244	6331444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-910.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	25.84	38.48	47.35	58.72	47.05	38.26	47.83	47.16	27.34	53.73	71.86	40.72
Merged-chr17-23803033-3	chr17	23802923	23803123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175229)	promoter-TSS (NM_175229)	-164.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	192.21	207.01	166.57	192.65	215.6	285.04	187.01	174.93	264.15	354.99	328.62	180.44
Merged-chr11-74648143-3	chr11	74648025	74648225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1370.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	118.31	106.9	108.96	156.86	102.28	140.48	101.31	110.94	119.39	99.42	170.34	86.46
Merged-chr5-33378529-3	chr5	33378418	33378618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-178.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	161.92	171.54	133.49	156.86	147.69	227.03	141.17	144.0	197.67	230.47	210.04	135.96
Merged-chr4-12036769-3	chr4	12036696	12036896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51161.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	17.77	23.14	21.68	18.1	18.82	33.24	18.6	19.71	44.65	54.73	41.71	20.99
Merged-chr7-31042178-2	chr7	31042064	31042264	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	167.0	NM_008761	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	13.33	7.8	9.13	8.45	22.5	20.7	6.31	19.4	33.04	33.64	29.14	24.12
Merged-chr9-65032411-3	chr9	65032317	65032517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-41.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	45.63	39.74	61.04	40.62	51.55	40.14	24.91	44.38	62.94	50.21	46.23	33.83
Merged-chr7-16244282-3	chr7	16244195	16244395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176912)	promoter-TSS (NM_176912)	-141.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	72.28	66.4	81.58	67.17	88.37	88.74	73.08	79.99	121.75	103.94	99.49	71.74
Merged-chr4-141573342-1	chr4	141573242	141573442	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26582.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	4.85	2.01	4.56	3.22	15.96	10.03	2.33	3.73	9.44	8.03	2.51	4.07
Merged-chr7-127017366-3	chr7	127017258	127017458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-6.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	91.66	62.88	58.76	105.78	83.46	94.7	63.78	62.41	118.01	108.45	99.49	52.32
Merged-chr2-152029392-3	chr2	152029281	152029481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29515.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	31.5	25.4	38.22	44.64	36.82	30.42	21.59	40.49	40.71	38.66	59.29	38.53
Merged-chr1-33876528-3	chr1	33876404	33876604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 3 of 6)	MIRb|SINE|MIR	31117.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	74.7	60.37	48.49	80.44	49.5	57.7	47.5	61.54	54.09	73.81	60.8	30.7
Merged-chr11-72441300-3	chr11	72441211	72441411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016776)	promoter-TSS (NM_016776)	-16.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	32.3	26.41	32.52	32.58	58.5	43.59	12.95	36.9	45.24	48.7	69.85	25.06
Merged-chr11-30771718-3	chr11	30771616	30771816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-59.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	88.03	87.28	82.72	89.69	110.46	140.48	85.37	109.68	110.15	100.92	124.11	59.83
Merged-chr6-50377988-4	chr6	50377848	50378048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	L1MB1|LINE|L1	4889.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	39.57	47.79	33.66	42.63	33.55	41.08	36.87	29.27	42.48	65.27	58.79	44.48
Merged-chr11-48818518-3	chr11	48818417	48818617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1126.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	40.78	39.49	26.24	34.19	48.27	63.03	23.58	23.55	52.52	66.78	40.7	29.76
Merged-chr10-127211668-3	chr10	127211575	127211775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-53.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	58.55	48.29	30.8	36.2	47.46	55.5	37.2	56.24	69.04	35.15	56.28	38.85
Merged-chr19-4232317-3	chr19	4232214	4232414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132280)	promoter-TSS (NR_132280)	-101.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	31.5	20.37	13.69	27.75	24.96	24.46	28.57	22.29	27.14	27.62	22.11	23.81
Merged-chr5-63812455-3	chr5	63812364	63812564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-31.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	41.59	16.1	16.54	15.28	36.82	41.08	37.2	45.28	47.99	39.67	52.26	39.16
Merged-chr9-22411505-3	chr9	22411400	22411600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026739)	promoter-TSS (NM_026739)	-11.0	NM_026739	68283.0	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	93.68	74.2	73.59	84.46	81.41	103.48	65.77	91.21	128.44	117.49	136.17	76.44
Merged-chr8-35393640-3	chr8	35393547	35393747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	17906.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	24.63	16.1	28.52	27.75	30.27	26.97	22.92	28.43	28.91	28.12	49.75	22.87
Merged-chrX-13071411-3	chrX	13071337	13071537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009481)	promoter-TSS (NM_009481)	-61.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	73.49	74.7	92.98	94.52	109.23	118.84	89.02	100.91	115.65	140.09	166.32	83.33
Merged-chr15-57921550-3	chr15	57921421	57921621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081396, intron 3 of 20)	intron (NM_001081396, intron 3 of 20)	9322.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	36.75	37.73	42.21	67.17	51.55	50.17	45.18	41.47	64.12	53.73	67.84	41.66
Merged-chr2-74578985-3	chr2	74578882	74579082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027133)	promoter-TSS (NM_027133)	-34.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	95.3	74.7	99.83	113.42	100.23	114.77	111.94	173.94	120.18	121.51	204.51	107.76
Merged-chr6-146410039-3	chr6	146409918	146410118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92205.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	27.05	14.09	26.24	20.11	37.23	25.4	22.92	28.82	41.3	51.21	54.77	25.69
Merged-chr11-3332369-3	chr11	3332252	3332452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178149, intron 3 of 5)	CpG-1656	1621.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	40.78	29.43	52.48	36.6	64.64	69.3	38.86	80.86	73.17	64.27	82.41	57.64
Merged-chr19-59074599-3	chr19	59074502	59074702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1467.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	58.15	41.25	40.5	43.44	49.5	50.17	29.56	45.31	51.73	64.77	50.25	27.57
Merged-chr10-62948748-3	chr10	62948654	62948854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177372, intron 1 of 20)	intron (NM_177372, intron 1 of 20)	1725.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	73.09	72.69	95.84	55.1	91.23	151.77	47.83	85.4	89.89	70.8	88.44	67.04
Merged-chr7-97480921-3	chr7	97480812	97481012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-44.0	NM_027256	101861.0	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	55.32	56.59	52.48	55.1	76.5	63.66	57.13	71.78	58.02	59.25	73.36	47.62
Merged-chr1-191575647-3	chr1	191575556	191575756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	20.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	113.06	116.21	139.19	123.48	170.19	174.35	113.27	122.8	218.32	166.2	232.65	102.44
Merged-chr9-21016720-3	chr9	21016626	21016826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	786.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	99.74	137.33	109.53	43.44	112.5	205.08	91.68	52.12	167.58	183.27	137.68	53.57
Merged-chr9-21125747-4	chr9	21125662	21125862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205312, intron 3 of 24)	ID_B1|SINE|B4	5513.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	34.32	34.96	43.93	22.93	28.64	35.75	18.93	29.36	23.6	20.59	22.11	18.8
Merged-chr17-24169582-3	chr17	24169497	24169697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	81.0	NM_001361532	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	58.55	87.53	69.03	53.49	60.55	74.32	59.79	46.43	85.95	131.05	70.35	74.24
Merged-chr9-13541004-3	chr9	13540904	13541104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78985.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	20.19	21.88	31.95	35.39	22.5	35.12	13.95	27.28	26.16	32.64	27.13	14.1
Merged-chr3-51277438-3	chr3	51277385	51277585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291063)	promoter-TSS (NM_001291063)	29.0	NM_001291063	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	69.05	50.56	38.22	41.83	60.96	43.59	48.5	42.9	43.86	46.7	62.31	31.01
Merged-chr2-128943929-4	chr2	128943811	128944011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020594, exon 1 of 9)	exon (NM_020594, exon 1 of 9)	109.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	40.38	37.73	34.8	49.47	45.82	62.71	50.16	28.15	41.7	37.66	50.75	46.05
Merged-chr9-102860169-3	chr9	102860067	102860267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	25247.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	60.57	43.51	61.04	68.37	42.96	41.39	54.81	55.79	60.19	79.83	101.0	53.57
Merged-chr3-116662653-3	chr3	116662556	116662756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008246)	promoter-TSS (NM_008246)	21.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	113.87	130.04	109.53	148.81	170.19	167.13	101.64	159.7	181.94	185.78	250.24	101.81
Merged-chr2-45219998-3	chr2	45219886	45220086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102544.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	23.42	26.66	24.53	26.14	23.73	29.79	26.24	45.28	36.98	23.6	34.67	24.43
Merged-chr6-119175325-3	chr6	119175293	119175493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	140.0	NM_001033379	319618.0	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	27.86	31.44	47.92	34.19	41.73	33.24	47.83	42.42	28.91	40.17	34.17	34.46
Merged-chr7-19468519-3	chr7	19468406	19468606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10012.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	27.46	20.63	18.83	24.94	42.14	44.53	18.27	26.41	42.29	62.26	62.81	26.0
Merged-chr4-15987383-3	chr4	15987275	15987475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 13 of 15)	Lx9|LINE|L1	26463.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	26.25	21.88	46.78	34.99	17.59	24.77	12.62	33.64	45.04	10.04	38.19	21.3
Merged-chr3-27195335-3	chr3	27195236	27195436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	12332.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	23.42	15.09	31.95	28.56	37.23	28.54	28.9	45.93	47.6	37.16	42.21	31.01
Merged-chr2-169779244-1	chr2	169779144	169779344	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	145598.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	0.0	2.41	0.0	0.94	0.0	0.0	36.39	20.08	30.15	24.12
Merged-chr10-98914407-3	chr10	98914288	98914488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-254.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	233.8	232.41	233.89	240.52	292.1	297.89	230.86	236.19	382.36	404.2	471.33	193.6
Merged-chr6-120955371-3	chr6	120955256	120955456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-3488.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	42.8	27.17	27.95	35.39	42.14	30.73	22.26	29.05	29.11	30.63	52.26	16.6
Merged-chr5-113776362-3	chr5	113776249	113776449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025526, intron 3 of 4)	intron (NM_025526, intron 3 of 4)	3537.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	27.05	33.2	33.09	16.09	34.36	47.66	11.29	31.04	32.45	39.67	43.21	32.58
Merged-chr15-83464692-3	chr15	83464579	83464779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-73.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	185.75	154.44	198.52	204.72	189.01	207.59	153.13	190.6	199.64	174.23	240.69	114.66
Merged-chr9-108053063-3	chr9	108052967	108053167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177275)	promoter-TSS (NM_177275)	-92.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	67.43	62.38	92.41	68.78	74.46	95.64	57.8	75.28	93.23	90.88	104.01	62.97
Merged-chr1-87853309-3	chr1	87853211	87853411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	24.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	30.28	31.94	39.93	30.16	25.77	26.65	28.9	23.69	37.17	31.13	55.78	24.75
Merged-chr2-103583477-3	chr2	103583366	103583566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	17156.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	40.78	46.53	66.17	54.7	49.5	58.95	36.87	66.9	54.29	65.27	68.84	40.41
Merged-chr6-83653217-1	chr6	83653117	83653317	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016751, exon 4 of 7)	exon (NM_016751, exon 4 of 7)	2899.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	1.21	0.0	2.85	5.23	2.05	0.31	9.3	8.97	2.36	1.0	5.53	2.82
Merged-chr4-58912198-3	chr4	58912083	58912283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355697)	promoter-TSS (NM_001355697)	-253.0	NM_001355696	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	17.77	21.88	22.82	18.1	15.14	24.77	19.93	20.19	16.92	11.05	13.57	28.51
Merged-chr18-77820907-3	chr18	77820820	77821020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	L1ME2|LINE|L1	-24530.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	31.9	39.74	49.63	21.72	30.68	46.1	36.21	38.61	42.88	34.65	54.77	29.13
Merged-chr4-122886074-3	chr4	122885990	122886190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-14.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	188.57	188.65	175.7	183.81	186.55	222.32	132.2	149.05	263.76	309.3	281.39	180.75
Merged-chr8-109737785-3	chr8	109737678	109737878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080930)	promoter-TSS (NM_001080930)	-39.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	50.07	44.02	37.65	48.26	50.32	47.66	25.58	34.43	66.68	58.24	60.3	41.35
Merged-chr9-5344299-3	chr9	5344206	5344406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1170.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	35.94	29.68	39.36	42.63	46.64	45.78	39.86	50.61	54.09	45.69	78.39	27.88
Merged-chr12-98370967-3	chr12	98370865	98371065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102330.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	21.0	31.44	21.68	36.2	33.96	18.81	21.92	30.79	25.57	23.1	22.11	12.22
Merged-chr5-21737210-3	chr5	21737103	21737303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028431)	promoter-TSS (NM_028431)	43.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	44.82	38.74	40.5	58.32	36.41	44.84	54.14	40.51	51.73	47.2	58.29	28.19
Merged-chr16-45038822-2	chr16	45038719	45038919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55192.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.85	6.79	16.54	16.89	16.36	16.62	27.57	32.72	5.31	10.54	8.04	3.76
Merged-chr12-25330258-3	chr12	25330167	25330367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201093.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	96.51	86.27	99.26	122.67	58.09	44.53	58.13	91.65	57.43	30.63	54.27	34.77
Merged-chr2-73056276-3	chr2	73056163	73056363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75817.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	18.57	22.89	25.1	27.35	17.59	33.55	30.23	33.2	30.49	21.09	37.18	23.49
Merged-chr2-43772855-3	chr2	43772759	43772959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	24035.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	73.49	81.5	58.19	90.09	96.14	86.23	64.44	116.61	100.9	87.37	98.99	84.27
Merged-chr11-83593043-3	chr11	83592937	83593137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	50.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	26.65	22.89	25.67	31.37	49.91	38.88	28.57	41.41	36.19	33.64	49.75	18.17
Merged-chr2-37430828-3	chr2	37430742	37430942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	77.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	41.99	41.25	55.9	64.35	54.82	38.57	26.24	50.27	74.94	48.2	75.37	34.15
Merged-chr14-75034409-3	chr14	75034331	75034531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 2 of 13)	intron (NM_198642, intron 2 of 13)	18404.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	48.46	39.74	47.92	48.67	41.73	35.12	31.56	45.2	50.16	33.64	58.79	38.53
Merged-chr15-97213300-3	chr15	97213206	97213406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33801.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	34.73	25.4	26.24	22.93	33.55	37.0	21.26	36.0	41.11	38.66	54.77	20.68
Merged-chr16-57167290-3	chr16	57167168	57167368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	64.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	39.17	39.49	46.21	36.6	51.96	47.04	67.1	61.99	55.86	62.76	71.35	41.66
Merged-chr6-54948781-3	chr6	54948652	54948852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	22909.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	63.4	64.39	45.64	74.81	63.0	63.34	53.15	62.1	84.58	93.39	70.35	41.35
Merged-chr15-53140439-3	chr15	53140317	53140517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	205766.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	67.03	39.74	51.91	75.61	65.46	113.83	112.94	106.04	75.13	54.23	67.84	42.6
Merged-chr17-72967139-3	chr17	72967043	72967243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48838.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	37.55	27.92	27.95	45.05	36.41	34.49	25.24	50.5	53.5	35.15	52.76	23.49
Merged-chr1-136675120-3	chr1	136675003	136675203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8293.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	31.9	16.85	30.23	32.58	36.41	29.48	39.53	34.29	34.03	58.75	40.2	44.17
Merged-chr16-57423134-3	chr16	57423016	57423216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	PB1D11|SINE|Alu	69839.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	58.15	52.82	90.7	111.81	76.91	82.78	72.41	87.36	81.82	86.86	121.1	72.36
Merged-chr6-87130859-3	chr6	87130771	87130971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	26125.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	17.77	13.58	23.39	28.15	18.0	16.93	9.63	19.91	20.85	15.06	39.19	22.56
Merged-chr5-24454470-3	chr5	24454370	24454570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	2293.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	22.21	18.11	25.1	25.34	29.05	37.94	17.94	35.8	26.55	28.12	26.63	20.36
Merged-chrX-20688427-3	chrX	20688315	20688515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011049)	promoter-TSS (NM_011049)	-11.0	NM_011049	18555.0	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	21.8	26.41	34.8	27.75	33.55	26.97	21.92	29.89	43.66	30.63	48.74	26.94
Merged-chr1-188984195-1	chr1	188984095	188984295	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153196, intron 10 of 17)	intron (NR_153196, intron 10 of 17)	23645.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	2.42	2.52	12.55	5.23	1.64	1.25	2.66	1.15	19.28	2.51	29.65	14.1
Merged-chr15-5951098-3	chr15	5951009	5951209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93595.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	52.49	45.53	41.64	55.91	48.68	72.44	54.14	55.46	57.24	35.65	56.78	38.22
Merged-chrX-10331946-3	chrX	10331834	10332034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79629.0	NM_008769	18416.0	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	39.57	23.64	36.51	63.15	27.82	43.9	24.91	59.41	58.02	39.16	62.81	32.27
Merged-chr19-53310477-3	chr19	53310378	53310578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-28.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	26.65	24.4	37.65	34.99	41.32	24.46	28.57	37.85	31.27	42.68	59.29	26.31
Merged-chr8-72548920-3	chr8	72548859	72549059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-649.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	25.44	21.38	19.97	17.7	27.82	37.0	24.91	27.67	29.9	37.66	51.76	25.69
Merged-chr12-38778713-3	chr12	38778627	38778827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1355.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	80.36	70.68	65.03	89.69	91.64	116.34	60.12	80.24	104.05	102.93	134.67	48.87
Merged-chr19-55689746-3	chr19	55689641	55689841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	12463.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	35.53	33.7	44.5	30.57	33.14	42.65	32.88	49.26	33.04	24.1	35.68	14.72
Merged-chr6-3346100-1	chr6	3346000	3346200	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53471.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	36.58	31.13	38.19	19.11
Merged-chr16-23107407-3	chr16	23107302	23107502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123037)	promoter-TSS (NM_001123037)	-66.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	27.05	30.94	30.23	17.7	24.55	25.09	24.91	30.84	29.11	40.17	52.76	23.81
Merged-chr9-107744291-3	chr9	107744197	107744397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_148930, exon 21 of 25)	exon (NM_148930, exon 21 of 25)	26705.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	89.64	98.6	90.7	62.34	107.19	187.2	68.76	78.9	119.78	135.07	120.09	49.18
Merged-chr6-16964147-3	chr6	16964070	16964270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	29.88	35.21	31.95	62.34	42.55	44.21	42.52	65.69	44.06	25.61	42.21	23.18
Merged-chrX-48694993-3	chrX	48694874	48695074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173376)	promoter-TSS (NM_173376)	-30.0	NM_173376	209003.0	Mm.32561	NM_173376	ENSMUSG00000031107	Rbmx2	2700089A17Rik|2810411A03Rik|CGI-79	RNA binding motif protein, X-linked 2	protein-coding	38.36	42.76	46.21	54.3	62.59	70.55	45.51	70.46	87.53	65.27	84.92	41.35
Merged-chr8-70720105-3	chr8	70720025	70720225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	1582.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	72.68	66.15	70.74	65.56	136.64	171.21	121.57	137.58	119.39	103.94	101.0	59.83
Merged-chr9-61960995-3	chr9	61960893	61961093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 7 of 7)	MER5A|DNA|hAT-Charlie	-14194.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	40.38	28.67	63.32	24.13	41.73	31.98	32.22	39.03	47.21	30.13	49.24	25.69
Merged-chr8-4493417-3	chr8	4493318	4493518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026058)	promoter-TSS (NM_026058)	13.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	53.3	36.72	29.09	50.68	56.46	58.01	44.51	71.33	54.48	45.19	76.88	38.53
Merged-chr15-36719435-3	chr15	36719338	36719538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71494.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	90.45	67.16	78.15	77.22	51.55	86.86	62.45	62.22	92.25	81.34	120.09	66.73
Merged-chr4-154944404-3	chr4	154944296	154944496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16319.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	127.2	161.23	106.1	92.1	130.91	214.8	87.69	72.84	153.22	178.25	155.27	72.36
Merged-chr10-30778950-3	chr10	30778843	30779043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	Lx7|LINE|L1	24383.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	16.96	18.86	23.96	33.38	31.5	28.22	21.59	26.22	28.72	35.65	27.13	24.12
Merged-chr15-25843144-3	chr15	25842987	25843187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034851)	promoter-TSS (NM_001034851)	-211.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	60.97	27.42	41.64	41.83	77.32	85.61	65.11	108.95	66.09	72.3	105.52	48.87
Merged-chr5-140508843-3	chr5	140508723	140508923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	3214.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	29.88	25.91	15.97	26.95	30.27	46.1	19.27	29.22	39.53	32.64	31.66	23.18
Merged-chr13-40900168-3	chr13	40900078	40900278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008105, intron 1 of 2)	intron (NM_008105, intron 1 of 2)	13420.0	NM_008105	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	40.38	29.43	60.47	53.49	32.32	45.15	42.52	74.36	45.83	39.16	62.81	32.58
Merged-chr8-11756059-3	chr8	11755959	11756159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113517, intron 1 of 18)	Tigger17|DNA|TcMar-Tigger	-2271.0	NM_017402	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	27.05	40.24	28.52	13.67	34.77	52.68	29.23	39.48	55.86	53.22	26.63	26.0
Merged-chr17-29000641-3	chr17	29000540	29000740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357173, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	7355.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	30.28	33.2	39.93	30.57	31.09	56.76	17.61	31.99	39.14	36.65	30.15	28.19
Merged-chr10-95367887-3	chr10	95367782	95367982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	31606.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	33.52	32.7	29.09	34.19	36.41	24.77	33.22	36.2	32.26	36.15	34.67	23.81
Merged-chr1-7824198-2	chr1	7824098	7824298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	735278.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	19.38	23.9	37.08	37.81	22.09	24.77	22.92	42.48	3.74	3.01	7.54	1.57
Merged-chr5-105696211-3	chr5	105696130	105696330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3739.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	87.22	86.53	87.28	113.82	81.82	142.68	60.12	99.93	123.52	121.01	150.24	84.9
Merged-chr7-4501766-3	chr7	4501667	4501867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-87.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	57.74	47.79	46.78	37.81	58.09	53.93	36.54	51.22	75.72	69.79	79.89	42.6
Merged-chr6-125573400-3	chr6	125573290	125573490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	20442.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	45.23	44.77	50.77	33.38	59.32	83.41	31.89	50.22	78.48	58.24	79.89	38.22
Merged-chr11-76845716-3	chr11	76845607	76845807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007754, intron 1 of 20)	intron (NM_007754, intron 1 of 20)	1301.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	21.0	15.34	26.24	16.89	41.32	48.6	29.9	22.93	24.98	42.18	39.19	22.56
Merged-chr8-107100482-3	chr8	107100390	107100590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-3945.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	16.15	16.6	21.68	19.31	28.64	36.06	16.28	24.45	25.18	17.57	48.74	16.92
Merged-chr4-58423370-3	chr4	58423277	58423477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17721.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	80.76	116.71	69.03	40.62	74.46	113.51	48.16	25.15	99.33	91.38	102.0	38.85
Merged-chr5-31054767-3	chr5	31054585	31054785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-95.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	34.73	18.86	23.96	24.94	39.68	36.06	19.6	35.94	36.19	50.71	55.27	22.87
Merged-chr5-123862823-1	chr5	123862723	123862923	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_030701)	TTS (NM_030701)	2693.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	14.54	5.53	5.13	4.83	17.18	15.05	5.98	5.24	21.64	19.08	13.06	8.14
Merged-chr3-142494066-3	chr3	142493935	142494135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2899.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	16.96	29.43	16.54	17.7	27.0	34.49	20.93	10.91	35.8	33.64	26.13	17.86
Merged-chr7-28381189-3	chr7	28381111	28381311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1983.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	279.02	235.68	290.36	280.33	305.19	361.24	256.1	317.44	354.63	355.49	499.97	233.7
Merged-chr5-30897945-1	chr5	30897845	30898045	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8611.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	8.88	5.53	10.27	15.69	4.09	1.25	5.31	10.68	4.33	8.54	7.03	5.33
Merged-chr2-158160100-3	chr2	158159972	158160172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	38.36	39.49	94.13	67.17	68.73	41.39	72.41	107.83	66.09	47.7	84.42	55.45
Merged-chr15-59653862-1	chr15	59653762	59653962	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	5208.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.86	3.77	0.0	3.22	3.68	10.66	2.99	2.1	2.36	3.01	1.51	3.45
Merged-chr16-49905390-3	chr16	49905292	49905492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	49738.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	29.48	25.66	51.91	40.22	48.27	56.13	64.77	74.44	70.41	56.74	88.44	52.63
Merged-chr2-80150259-2	chr2	80150158	80150358	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20600.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	3.23	5.28	7.42	11.26	6.55	11.92	28.23	28.46	17.31	25.11	34.17	21.3
Merged-chr10-94107357-3	chr10	94107255	94107455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-40576.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	31.5	24.15	50.77	49.47	40.91	15.99	28.57	55.63	33.83	23.6	45.22	32.27
Merged-chr2-22748178-3	chr2	22748061	22748261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26166.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	48.86	46.53	50.77	69.18	49.91	48.6	45.18	40.29	48.39	56.24	56.28	29.76
Merged-chr7-111028882-3	chr7	111028777	111028977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-74.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	92.07	103.88	87.28	108.19	94.09	116.96	96.0	75.9	84.77	95.4	99.99	77.06
Merged-chr3-108044912-3	chr3	108044799	108044999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026764)	promoter-TSS (NM_026764)	-40.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	56.13	61.12	66.17	51.48	57.68	77.14	41.85	66.65	67.66	48.7	88.44	31.01
Merged-chr10-127635246-3	chr10	127635145	127635345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7741.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	52.09	56.85	94.13	55.5	61.77	118.22	70.42	66.56	65.1	61.26	81.9	41.35
Merged-chr5-53588612-3	chr5	53588513	53588713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	-1733.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	29.48	24.4	29.09	20.11	45.82	52.99	30.56	39.5	42.88	53.22	45.22	28.82
Merged-chr10-7212778-3	chr10	7212674	7212874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-537.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	96.51	87.28	95.84	75.61	124.78	157.1	71.08	84.2	98.34	106.45	86.93	40.41
Merged-chr12-75669652-3	chr12	75669567	75669767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028203)	promoter-TSS (NM_028203)	-130.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	281.04	306.11	349.12	379.68	280.65	374.09	238.83	331.68	460.64	486.04	565.29	283.82
Merged-chr19-38011567-3	chr19	38011454	38011654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32023.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	57.34	53.07	68.45	64.75	75.28	87.17	78.06	57.62	35.6	51.21	58.29	25.69
Merged-chr6-37442346-3	chr6	37442243	37442443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-195.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	215.22	251.28	268.69	313.72	283.51	334.9	280.02	299.05	372.53	392.65	392.44	205.19
Merged-chr4-105263818-3	chr4	105263717	105263917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106470.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	179.29	201.73	232.18	219.2	198.42	227.65	169.07	201.37	281.85	292.73	296.46	187.65
Merged-chr10-42862455-3	chr10	42862348	42862548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	1936.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	53.7	41.5	53.05	57.11	50.32	44.84	24.25	43.57	56.84	48.2	38.19	30.39
Merged-chr5-138255693-3	chr5	138255618	138255818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	236.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	109.02	108.91	88.99	91.3	137.87	107.24	63.44	71.92	151.25	143.6	98.99	59.52
Merged-chrX-129750865-3	chrX	129750754	129750954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	intron (NM_172493, intron 1 of 26)	1112.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	46.44	51.31	45.07	26.95	50.73	50.17	38.86	38.3	59.01	61.26	83.41	29.45
Merged-chr11-17211584-3	chr11	17211463	17211663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178909)	promoter-TSS (NM_178909)	26.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	82.37	52.32	55.33	59.12	90.41	108.5	59.46	86.61	172.89	173.23	176.37	113.72
Merged-chr2-167895213-3	chr2	167895099	167895299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-37128.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	21.0	20.12	15.97	21.72	15.96	24.77	16.94	18.08	24.59	24.6	17.59	12.53
Merged-chr15-102510808-3	chr15	102510712	102510912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358844)	promoter-TSS (NM_001358844)	-112.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	21.8	21.88	15.4	24.13	30.27	26.97	17.61	22.96	32.85	53.73	52.26	13.47
Merged-chr15-79357183-3	chr15	79357087	79357287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304832, intron 2 of 2)	intron (NM_001304832, intron 2 of 2)	8785.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	92.07	68.42	63.89	27.75	60.14	121.04	20.93	31.71	145.35	142.6	124.62	48.24
Merged-chr6-128424678-3	chr6	128424587	128424787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133927, intron 1 of 11)	CpG	223.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	118.72	103.63	113.52	105.38	119.46	150.51	87.69	137.1	159.12	162.68	195.97	116.22
Merged-chr2-30133743-3	chr2	30133629	30133829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-17.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	117.5	152.43	159.16	86.47	150.96	140.17	72.41	98.05	146.53	166.7	158.28	91.47
Merged-chr18-78312288-3	chr18	78312195	78312395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-105855.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	23.42	29.18	27.38	55.91	24.96	44.21	22.26	41.16	39.14	46.7	64.82	35.4
Merged-chr16-4969616-3	chr16	4969494	4969694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073370, intron 4 of 8)	intron (NR_073370, intron 4 of 8)	5306.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	12.11	14.34	27.95	28.56	22.5	26.65	25.24	39.76	15.54	13.56	31.66	17.86
Merged-chr12-84114321-3	chr12	84114236	84114436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	8.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	21.4	16.1	19.4	26.14	42.96	29.16	11.29	19.82	27.14	31.63	40.7	14.1
Merged-chr11-94321636-3	chr11	94321551	94321751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361574, intron 1 of 9)	CpG	312.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	25.04	26.41	35.94	19.71	31.5	47.66	14.28	26.16	40.12	41.17	40.7	33.52
Merged-chr11-8574743-3	chr11	8574646	8574846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89789.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	37.55	38.74	47.92	68.37	50.32	60.52	41.85	57.95	46.22	46.7	60.3	36.03
Merged-chr3-63976168-3	chr3	63976065	63976265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	22.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	72.68	54.83	72.45	73.6	78.14	78.39	71.08	92.83	95.39	91.89	153.26	69.55
Merged-chr12-108761409-3	chr12	108761314	108761514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31897.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	73.49	73.45	117.51	84.86	90.82	100.03	90.35	115.99	102.67	101.43	112.56	64.22
Merged-chr4-62663580-3	chr4	62663466	62663666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-10408.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	27.46	20.12	23.96	36.6	33.14	27.91	33.55	32.19	50.55	28.62	55.78	39.47
Merged-chr11-95041435-3	chr11	95041328	95041528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-57.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	153.44	159.72	164.86	162.49	182.05	179.36	133.2	151.01	191.57	139.08	182.9	101.19
Merged-chr10-60341768-3	chr10	60341670	60341870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	ORR1E|LTR|ERVL-MaLR	-5081.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	17.77	20.37	8.56	19.71	20.86	28.85	13.95	26.5	21.05	32.13	22.61	18.48
Merged-chr4-45949313-3	chr4	45949195	45949395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198660, intron 36 of 37)	intron (NM_198660, intron 36 of 37)	-16040.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	31.9	22.89	42.78	27.35	47.87	47.66	35.87	52.29	70.61	39.67	57.79	35.09
Merged-chr4-121024104-3	chr4	121023998	121024198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6851.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	71.47	62.38	61.04	66.36	99.41	80.9	63.78	73.68	98.34	86.86	72.36	50.44
Merged-chr8-109193948-3	chr8	109193841	109194041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126329, intron 5 of 9)	intron (NR_126329, intron 5 of 9)	55804.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	23.02	25.4	47.35	49.87	22.09	38.88	17.27	35.41	39.34	37.16	57.28	20.68
Merged-chr7-30194045-3	chr7	30193922	30194122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009795, exon 2 of 11)	exon (NM_009795, exon 2 of 11)	1131.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	28.27	23.64	15.4	25.74	18.41	44.53	27.9	20.52	28.13	28.62	38.69	28.51
Merged-chr4-21727686-3	chr4	21727582	21727782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-19.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	72.28	67.91	72.45	92.1	90.0	91.88	66.1	114.59	85.36	64.77	130.65	66.1
Merged-chr7-141194092-3	chr7	141194015	141194215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130443)	promoter-TSS (NM_001130443)	-15.0	NM_001172065	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	93.28	93.32	93.55	88.08	99.0	137.34	88.36	104.36	165.41	115.99	206.52	79.26
Merged-chr11-90225024-2	chr11	90224928	90225128	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24448.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	39.17	30.43	22.82	30.97	44.59	55.19	54.14	67.6	76.91	61.26	84.92	37.28
Merged-chr1-180768578-3	chr1	180768468	180768668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42525.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	28.27	43.77	25.1	39.82	37.64	35.43	35.21	39.95	29.9	39.67	29.65	27.57
Merged-chr10-8778088-3	chr10	8777986	8778186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	107984.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	99.74	75.71	118.08	98.54	85.91	132.33	104.3	109.96	96.18	89.37	128.13	58.89
Merged-chr11-11691871-3	chr11	11691775	11691975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	1698.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	44.01	39.99	41.64	53.89	36.41	46.41	37.87	51.39	63.14	39.67	66.33	39.78
Merged-chr2-181739525-3	chr2	181739431	181739631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23801.0	NM_001171615	17932.0	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	50.07	36.22	49.63	45.45	23.32	31.98	16.61	16.96	42.48	27.62	33.16	18.8
Merged-chr4-124693623-3	chr4	124693481	124693681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026031)	promoter-TSS (NM_026031)	-27.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	46.44	30.69	45.07	43.84	47.46	58.01	31.56	50.72	50.94	48.2	84.92	42.6
Merged-chr14-46760466-3	chr14	46760373	46760573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-68.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	205.13	193.43	253.85	224.43	243.42	296.95	219.9	301.77	243.3	227.96	327.12	135.02
Merged-chr10-14174353-3	chr10	14174253	14174453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207974.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	97.72	106.4	126.64	113.42	100.64	118.22	117.26	85.93	112.11	125.53	133.66	66.41
Merged-chr8-111659260-3	chr8	111659185	111659385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	15842.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	50.88	61.12	36.51	47.06	54.82	65.54	33.22	39.17	50.75	80.84	78.39	45.11
Merged-chr19-45018038-3	chr19	45017925	45018125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-110.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	21.8	14.34	19.97	22.93	29.05	16.62	10.96	24.53	27.54	25.61	29.65	14.41
Merged-chr10-70287940-3	chr10	70287830	70288030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42654.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	8.08	15.34	14.26	21.32	23.32	15.05	21.59	27.34	24.39	22.59	36.18	24.75
Merged-chr19-10845639-3	chr19	10845554	10845754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3110.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	24.23	42.01	52.48	30.16	32.73	56.76	37.54	34.77	84.18	57.74	85.92	54.51
Merged-chr8-125734226-3	chr8	125734124	125734324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	21.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	48.05	35.97	42.78	41.83	30.68	42.65	25.24	37.04	62.35	50.21	53.26	36.34
Merged-chr8-122611513-3	chr8	122611366	122611566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021502)	promoter-TSS (NM_021502)	21.0	NM_001193645	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	94.89	91.56	143.18	76.82	127.64	163.06	97.66	102.98	120.96	143.6	196.97	98.68
Merged-chr11-101008275-3	chr11	101008196	101008396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1156.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	34.73	22.13	26.81	32.98	32.73	41.39	18.27	27.81	46.42	37.66	28.64	39.16
Merged-chr2-69897235-3	chr2	69897174	69897374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303033)	promoter-TSS (NM_001303033)	28.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	93.68	100.86	103.82	123.07	106.37	148.32	105.63	97.68	140.44	116.49	184.41	72.36
Merged-chr3-126655273-3	chr3	126655171	126655371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	58320.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	23.82	25.66	40.5	24.13	34.36	41.08	37.54	49.57	42.68	51.21	53.26	25.06
Merged-chrM-12137-2	chrM	12088	12288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											38920.25	40756.59	45414.05	52487.06	36568.53	43686.65	42418.89	52232.65	0.0	0.0	0.0	0.0
Merged-chr4-99100911-3	chr4	99100800	99101000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	20015.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	26.65	25.91	20.54	20.11	18.0	18.19	15.61	30.17	25.18	17.07	21.61	16.29
Merged-chr12-101913150-3	chr12	101913046	101913246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028446)	promoter-TSS (NM_028446)	25.0	NM_028446	109181.0	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	41.59	35.47	31.95	45.05	42.96	54.56	41.52	49.79	51.14	42.18	83.91	35.09
Merged-chr6-13871537-3	chr6	13871446	13871646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	-23.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	39.57	43.77	30.23	48.26	54.0	57.07	43.85	51.08	75.72	71.3	87.93	37.91
Merged-chr4-34550441-3	chr4	34550330	34550530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-185.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	201.49	193.68	247.01	222.82	226.64	267.48	234.51	308.97	321.98	278.67	389.42	203.31
Merged-chr4-123749870-1	chr4	123749770	123749970	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023423, intron 1 of 4)	CpG	429.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	16.56	10.82	7.99	12.87	6.55	12.86	10.96	8.75	18.69	15.57	24.12	16.29
Merged-chr10-84573859-3	chr10	84573749	84573949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3098.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	23.02	28.67	37.65	17.29	38.05	39.51	22.92	53.44	32.65	37.16	67.84	20.99
Merged-chr11-110095804-1	chr11	110095704	110095904	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153145, intron 1 of 38)	intron (NM_153145, intron 1 of 38)	133.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	2.42	3.77	3.99	6.03	18.41	21.01	17.94	9.87	6.88	7.53	6.53	2.82
Merged-chr13-73604752-3	chr13	73604649	73604849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146047, intron 1 of 16)	intron (NM_146047, intron 1 of 16)	747.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	22.21	15.09	18.25	11.66	27.0	39.2	16.94	20.36	29.7	26.61	39.7	20.05
Merged-chr13-83518458-1	chr13	83518358	83518558	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170537, intron 1 of 10)	intron (NM_001170537, intron 1 of 10)	-5198.0	NM_001347579	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	7.27	6.54	2.28	4.83	29.46	37.94	37.54	48.79	5.51	4.02	4.52	5.64
Merged-chr4-152039334-3	chr4	152039235	152039435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	14.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	56.53	41.0	55.33	46.25	53.59	56.44	41.19	61.54	63.92	86.36	85.42	31.01
Merged-chr12-103425935-3	chr12	103425831	103426031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-64.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	221.28	240.96	239.59	271.89	311.33	293.19	238.17	293.41	283.62	327.87	447.21	186.08
Merged-chrUn_JH584304-29482-1	chrUn_JH584304	29382	29582	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30207.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	23.01	27.11	20.1	22.87
Merged-chr3-135608355-3	chr3	135608258	135608458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	83189.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	47.24	57.35	61.61	82.45	64.64	69.3	66.77	78.31	69.43	56.24	61.81	28.82
Merged-chr4-140989703-1	chr4	140989603	140989803	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	2830.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	3.63	3.27	6.28	0.8	1.64	8.47	4.65	9.2	7.08	5.02	4.02	7.21
Merged-chr16-8470761-3	chr16	8470675	8470875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-38.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	86.41	80.24	80.43	75.61	135.0	146.12	46.84	112.94	127.45	116.49	164.81	77.69
Merged-chr11-102408649-3	chr11	102408540	102408740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1123.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	138.91	113.19	120.37	119.45	155.46	212.92	129.21	149.3	211.05	215.4	207.53	139.4
Merged-chr9-63989463-3	chr9	63989374	63989574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	32585.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	43.61	29.93	39.93	37.4	69.14	79.02	52.15	82.18	59.2	38.16	67.33	38.85
Merged-chrX-36758759-3	chrX	36758655	36758855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 2 of 3)	intron (NR_075097, intron 2 of 3)	15123.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	35.94	33.45	44.5	34.59	26.18	29.79	31.89	47.24	46.03	24.6	45.73	32.27
Merged-chrX-103529443-3	chrX	103529354	103529554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16046.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	42.4	45.28	47.35	55.1	31.09	44.53	30.56	44.24	72.97	88.37	84.42	40.41
Merged-chr5-134688826-3	chr5	134688732	134688932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-242.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	293.16	267.37	302.34	272.69	285.55	445.9	213.92	260.66	357.58	390.64	408.52	220.85
Merged-chr11-75173641-3	chr11	75173537	75173737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029546)	promoter-TSS (NR_029546)	-45.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	65.41	58.61	63.32	70.79	74.46	75.26	48.83	48.73	112.11	110.46	88.94	63.59
Merged-chr1-33814501-3	chr1	33814406	33814606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359275)	promoter-TSS (NM_001359275)	89.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	65.41	57.1	65.03	64.35	87.96	78.71	67.76	94.82	95.2	98.91	133.66	49.81
Merged-chr2-168541376-3	chr2	168541213	168541413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	49052.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	22.21	13.33	20.54	21.72	29.46	31.04	22.59	35.5	15.14	13.05	24.12	16.92
Merged-chr1-89570671-3	chr1	89570567	89570767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	113225.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	27.05	21.88	36.51	38.21	64.23	48.92	67.43	89.3	35.01	34.65	52.26	36.34
Merged-chr10-44011560-3	chr10	44011455	44011655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6709.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	24.63	24.65	15.4	24.13	36.82	29.48	23.92	31.96	27.14	28.12	32.16	15.04
Merged-chr11-69846529-3	chr11	69846426	69846626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023564)	promoter-TSS (NM_023564)	-91.0	NM_023564	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	37.15	33.96	24.53	32.58	54.0	62.4	35.54	34.12	42.68	57.74	53.77	47.3
Merged-chr1-64122218-3	chr1	64122118	64122318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	111.04	132.3	99.83	88.89	121.09	188.46	105.3	90.42	155.97	161.18	163.81	84.58
Merged-chr10-8759394-3	chr10	8759293	8759493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	126677.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	120.73	102.37	166.0	147.61	110.46	100.97	103.64	139.71	108.38	82.35	151.25	70.8
Merged-chr11-6299686-3	chr11	6299613	6299813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010956, intron 2 of 22)	B3|SINE|B2	7134.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	68.24	53.07	63.32	74.81	101.46	67.42	60.12	86.97	107.2	94.4	105.02	66.1
Merged-chr18-80256150-3	chr18	80256068	80256268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164424)	promoter-TSS (NM_001164424)	-58.0	NM_001164424	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	168.79	143.12	158.02	157.26	148.91	186.89	102.64	152.75	124.5	157.16	203.51	99.31
Merged-chr15-30469037-3	chr15	30468949	30469149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	296456.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	124.37	150.67	153.45	229.25	164.05	178.11	151.8	189.31	204.16	179.25	228.13	155.07
Merged-chr19-43675375-1	chr19	43675275	43675475	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	197.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	65.01	89.29	83.29	89.29	85.91	98.46	81.38	74.47	95.79	112.97	128.13	56.39
Merged-chr12-4545640-3	chr12	4545547	4545747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	21534.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	54.11	47.29	66.17	59.93	73.64	60.52	46.5	68.8	66.09	53.73	75.37	37.59
Merged-chr2-160276162-3	chr2	160276071	160276271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	77.53	75.96	90.7	61.13	57.68	68.99	46.5	81.76	61.96	53.22	99.99	43.86
Merged-chr4-137365840-3	chr4	137365747	137365947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8088.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	45.23	47.29	73.59	63.15	58.91	67.42	45.84	63.22	51.34	46.19	50.75	40.72
Merged-chr11-98959662-3	chr11	98959574	98959774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	-797.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	77.53	104.89	113.52	123.48	107.19	118.84	108.29	118.94	117.03	125.53	180.39	96.17
Merged-chr15-75969141-3	chr15	75969025	75969225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347040)	promoter-TSS (NM_001347040)	2.0	NM_001081065	69020.0	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	33.52	29.93	21.68	17.29	27.0	35.75	22.92	19.71	46.62	34.65	27.64	29.13
Merged-chr16-91547556-3	chr16	91547454	91547654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	460.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	60.57	61.62	45.07	29.36	65.46	98.46	39.2	39.65	79.86	79.83	85.92	37.59
Merged-chr1-130428869-3	chr1	130428744	130428944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151525, intron 2 of 3)	intron (NR_151525, intron 2 of 3)	-5801.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	51.69	61.37	61.04	34.19	64.23	62.09	30.89	18.62	84.18	75.32	69.34	43.23
Merged-chr19-24477504-3	chr19	24477398	24477598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026520)	promoter-TSS (NM_026520)	-24.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	141.73	133.06	141.47	116.24	133.37	151.46	125.56	128.8	175.64	190.3	176.87	94.61
Merged-chr7-127922545-3	chr7	127922448	127922648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360699, intron 6 of 10)	intron (NM_001360699, intron 6 of 10)	7565.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	52.09	45.78	56.48	80.04	85.5	89.37	72.75	82.35	69.04	70.29	71.86	52.0
Merged-chr6-86472382-3	chr6	86472287	86472487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8443.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	161.11	160.47	132.35	161.68	160.78	218.56	125.89	139.68	197.67	216.41	182.4	136.27
Merged-chr5-17835890-3	chr5	17835821	17836021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159555)	promoter-TSS (NM_001159555)	-25.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	69.45	26.66	39.93	62.74	34.36	46.1	38.53	67.29	89.49	85.36	129.64	44.48
Merged-chr4-150013927-4	chr4	150013752	150013952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4829.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	11.31	9.31	17.11	12.47	17.59	16.31	13.29	14.13	12.59	17.07	16.08	20.99
Merged-chr2-173784561-3	chr2	173784481	173784681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019806)	TTS (NM_019806)	47010.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	46.03	27.92	57.05	52.29	72.41	59.89	50.16	84.34	56.25	46.19	83.91	33.21
Merged-chr1-35890677-3	chr1	35890585	35890785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177715.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	80.76	65.9	99.83	112.62	34.77	55.5	74.41	80.92	71.59	54.73	113.06	46.99
Merged-chr2-19554234-3	chr2	19554096	19554296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-286.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	18.17	31.94	18.83	43.44	27.0	25.09	29.23	31.54	27.73	19.08	34.17	27.88
Merged-chr7-100961333-3	chr7	100961233	100961433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3033.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	8.08	14.34	27.38	26.95	22.91	25.4	25.91	40.57	20.26	24.1	28.14	17.54
Merged-chr9-98986344-3	chr9	98986258	98986458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-15.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	227.74	223.61	232.75	246.55	263.46	278.14	212.26	241.96	264.55	289.71	297.47	177.31
Merged-chr1-180313076-3	chr1	180312972	180313172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17404.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	96.91	74.45	92.41	60.73	78.55	110.38	51.15	46.79	126.47	143.1	98.49	54.51
Merged-chr1-86064749-3	chr1	86064644	86064844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027357, exon 1 of 25)	5' UTR (NM_027357, exon 1 of 25)	125.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	25.84	28.93	34.8	26.95	38.05	48.6	47.5	28.65	22.03	44.19	32.66	27.88
Merged-chr8-91313379-3	chr8	91313290	91313490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173431)	promoter-TSS (NM_173431)	-135.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	259.24	282.72	285.23	316.53	299.87	382.56	318.55	442.96	351.68	313.31	477.86	233.7
Merged-chr5-101968116-3	chr5	101968010	101968210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 5 of 66)	MTD|LTR|ERVL-MaLR	101811.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	75.11	58.86	74.73	72.8	65.87	95.64	52.48	72.98	78.09	67.78	90.95	63.59
Merged-chr17-50415846-3	chr17	50415744	50415944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-93703.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	40.38	28.17	52.48	30.57	52.77	56.44	27.57	45.45	50.94	62.26	52.76	28.19
Merged-chr1-191724875-3	chr1	191724778	191724978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	6483.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	18.57	19.62	26.81	40.22	33.14	17.25	18.93	34.26	23.6	29.12	37.18	18.17
Merged-chr10-60932155-5	chr10	60932061	60932261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5971.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	12.92	12.32	6.85	25.34	29.46	35.12	38.53	28.77	32.45	51.72	36.18	34.46
Merged-chr9-59656402-3	chr9	59656296	59656496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	28.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	73.89	92.31	46.78	55.1	79.78	99.72	25.24	55.43	104.05	119.5	69.85	44.17
Merged-chr9-78538821-3	chr9	78538719	78538919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172773, intron 10 of 10)	intron (NM_172773, intron 10 of 10)	49226.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	15.34	14.09	9.7	19.31	15.14	25.71	27.57	22.18	22.62	17.57	23.11	15.98
Merged-chr6-128760877-3	chr6	128760781	128760981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27760.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	61.78	60.37	41.07	68.78	70.37	55.82	51.15	47.69	41.3	50.21	55.27	36.65
Merged-chr1-173412118-3	chr1	173412039	173412239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-8465.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	99.74	77.22	73.02	97.33	77.32	100.97	77.06	82.26	125.29	99.92	117.58	71.42
Merged-chr16-20548563-3	chr16	20548478	20548678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	-22.0	NR_030670	100042948.0	Mm.406754	NR_030670		Gm15760	-	mitochondrial ribosomal protein S18B pseudogene	pseudo	123.97	102.37	131.78	109.0	135.41	153.96	89.35	114.59	183.31	183.27	200.99	73.93
Merged-chr14-19415803-3	chr14	19415711	19415911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	186776.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	119.12	84.26	111.24	74.41	138.69	61.15	116.92	250.49	122.34	121.51	129.64	186.08
Merged-chr16-91869106-1	chr16	91869006	91869206	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62524.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	13.73	10.82	7.99	9.25	14.32	18.19	7.31	14.24	17.11	13.56	12.56	6.89
Merged-chr14-63078527-3	chr14	63078419	63078619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23446.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	43.61	52.32	73.02	70.79	65.87	69.3	97.66	91.54	86.94	62.76	100.5	77.38
Merged-chr16-17721345-3	chr16	17721237	17721437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285886, intron 1 of 16)	(CACCC)n|Simple_repeat|Simple_repeat	1563.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	71.88	69.92	80.43	59.93	90.0	92.5	96.33	99.42	93.03	85.36	99.49	51.69
Merged-chr2-167925175-3	chr2	167925076	167925276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7151.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	182.92	166.76	209.36	205.52	208.64	259.32	176.05	199.91	196.29	224.94	309.03	152.25
Merged-chr5-35747037-3	chr5	35746938	35747138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7051.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	43.21	19.37	17.11	20.11	38.05	32.93	34.88	46.21	34.03	29.62	45.73	29.76
Merged-chr7-128410836-1	chr7	128410736	128410936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7336.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	19.79	24.15	20.54	12.07	10.64	12.54	4.65	4.77	10.62	5.52	5.02	4.39
Merged-chr10-41302778-1	chr10	41302678	41302878	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	463.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	8.48	6.54	10.27	6.03	11.86	7.84	8.97	16.68	21.24	17.57	20.6	14.1
Merged-chr7-43392563-3	chr7	43392476	43392676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-15704.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	24.63	24.65	50.77	37.0	45.41	31.04	28.57	39.48	36.19	32.13	41.71	31.95
Merged-chr11-3182017-1	chr11	3181917	3182117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11446.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	19.38	23.9	17.11	20.51	18.82	12.23	36.54	19.51	0.0	0.0	0.0	0.0
Merged-chr5-139327929-3	chr5	139327829	139328029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2465.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	37.55	25.91	47.92	33.38	59.32	41.08	37.54	41.33	47.99	38.66	34.67	27.57
Merged-chr1-106171549-3	chr1	106171444	106171644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-20.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	234.61	257.56	243.01	297.63	241.37	307.61	294.64	266.1	358.56	330.39	428.12	209.58
Merged-chr14-122181626-3	chr14	122181526	122181726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-68.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	105.39	73.45	114.09	159.67	152.6	156.47	142.17	231.34	174.86	130.05	261.29	81.45
Merged-chr15-27664326-3	chr15	27664228	27664428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	17214.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	137.29	98.35	150.03	126.29	99.41	114.14	102.97	125.22	151.25	121.51	234.66	83.02
Merged-chr18-66468045-3	chr18	66467964	66468164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9460.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	111.85	87.28	122.65	87.28	107.19	135.15	102.31	140.1	160.1	143.1	192.95	98.37
Merged-chr1-53882704-3	chr1	53882617	53882817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	33293.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	29.88	29.43	46.78	48.67	72.41	67.73	28.57	97.01	41.3	42.68	56.28	23.81
Merged-chr9-21002853-3	chr9	21002716	21002916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023167)	promoter-TSS (NM_023167)	79.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	29.48	25.66	38.22	15.69	35.18	47.35	28.23	40.46	35.01	40.17	36.18	20.36
Merged-chr18-54978859-3	chr18	54978776	54978976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	11304.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	22.61	22.64	34.23	31.77	47.87	33.24	13.29	39.06	35.4	34.65	50.25	34.77
Merged-chr10-120665918-3	chr10	120665813	120666013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99819.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	23.42	17.1	23.39	22.52	13.09	17.25	19.27	24.31	25.57	15.06	35.17	13.16
Merged-chr12-59130351-3	chr12	59130240	59130440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146034, intron 1 of 24)	intron (NM_146034, intron 1 of 24)	592.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	86.01	69.92	86.71	66.77	80.18	94.07	74.07	75.95	76.51	107.45	132.15	44.8
Merged-chr7-16250928-3	chr7	16250841	16251041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-6787.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	23.02	19.12	26.81	22.12	34.77	39.2	30.89	38.83	22.42	23.6	29.14	16.29
Merged-chr1-172475325-3	chr1	172475227	172475427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-33.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	73.09	51.81	87.85	73.2	60.14	54.25	57.47	79.12	65.69	82.35	85.42	59.21
Merged-chr1-138619686-2	chr1	138619581	138619781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	76.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	39.98	34.46	32.52	38.61	38.46	40.45	41.19	33.36	24.98	37.16	37.18	23.81
Merged-chr7-68739200-3	chr7	68739105	68739305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001042592, exon 8 of 8)	3' UTR (NM_001042592, exon 8 of 8)	10033.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	41.19	27.67	69.6	59.12	43.77	42.65	36.54	64.09	64.32	46.19	74.37	32.89
Merged-chr7-71872514-2	chr7	71872421	71872621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37174.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	19.38	21.13	32.52	20.91	15.55	25.71	28.23	28.93	5.11	2.01	2.01	2.19
Merged-chr11-87756683-3	chr11	87756577	87756777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-187.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	52.09	64.89	88.99	49.07	49.09	79.02	50.16	58.93	111.92	80.84	86.43	61.71
Merged-chr4-32561903-3	chr4	32561799	32561999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026843, exon 4 of 5)	non-coding (NR_026843, exon 4 of 5)	9763.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	49.26	27.67	58.19	55.5	69.96	58.01	88.69	104.72	50.55	69.79	97.98	32.58
Merged-chr9-108339209-3	chr9	108339117	108339317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001329528, exon 1 of 3)	5' UTR (NM_001329528, exon 1 of 3)	137.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	141.73	120.48	128.35	123.48	153.0	209.47	104.97	125.44	183.12	215.4	204.51	104.0
Merged-chr4-11454095-3	chr4	11453998	11454198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31860.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	93.28	79.48	82.15	74.41	99.0	90.0	55.14	66.7	143.39	108.45	141.2	56.7
Merged-chr14-61172890-3	chr14	61172802	61173002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172809, intron 2 of 9)	CpG	34445.0	NM_015788	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	101.76	104.38	89.56	113.82	122.73	214.48	119.91	152.13	160.89	178.75	165.82	103.38
Merged-chr1-162570594-3	chr1	162570487	162570687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347125)	promoter-TSS (NM_001347125)	72.0	NM_001356526	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	161.52	180.09	157.45	166.91	197.6	262.46	208.27	177.25	220.49	252.56	336.66	175.12
Merged-chr3-97204073-3	chr3	97203972	97204172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029933, exon 10 of 10)	3' UTR (NM_029933, exon 10 of 10)	23292.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	29.07	27.17	45.64	31.37	40.91	33.24	24.91	36.53	33.63	35.15	32.66	20.99
Merged-chr2-127247818-3	chr2	127247716	127247916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	0.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	131.64	160.47	187.11	172.14	225.42	210.09	118.92	163.71	204.95	213.39	234.16	103.69
Merged-chr6-89294810-3	chr6	89294726	89294926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9101.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	79.95	84.26	73.02	76.02	102.28	123.23	74.41	109.23	145.94	127.03	148.23	67.98
Merged-chr11-98786674-3	chr11	98786584	98786784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8832.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	55.32	47.04	59.33	53.49	80.59	59.58	33.88	41.58	82.22	82.85	79.89	47.62
Merged-chr14-121938849-3	chr14	121938732	121938932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-23058.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	60.17	34.21	25.67	56.31	79.78	82.78	33.88	57.67	58.22	53.22	45.22	29.76
Merged-chr5-67847513-3	chr5	67847404	67847604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009727)	promoter-TSS (NM_009727)	-73.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	363.01	313.4	366.8	400.19	319.51	332.7	332.5	415.35	377.84	344.44	475.85	208.32
Merged-chr6-88465378-3	chr6	88465272	88465472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019685)	promoter-TSS (NM_019685)	-37.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	81.97	95.58	65.03	74.0	106.78	125.74	62.12	94.37	138.67	103.94	176.37	57.01
Merged-chr17-88441510-3	chr17	88441395	88441595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	CpG	791.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	24.23	24.4	18.25	16.09	25.77	37.32	29.23	28.49	46.22	43.18	64.82	38.53
Merged-chr5-31095521-3	chr5	31095415	31095615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347323, intron 1 of 8)	CpG	-1988.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	180.5	184.87	187.11	142.38	182.46	240.82	147.15	154.88	189.61	169.71	216.07	98.68
Merged-chr2-137815176-1	chr2	137815076	137815276	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-441408.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	3.02	9.13	9.65	3.27	4.39	9.63	9.5	6.29	6.03	3.52	3.76
Merged-chr1-43917059-3	chr1	43916983	43917183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16911.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	31.9	16.1	27.38	23.73	27.41	52.05	10.96	42.0	37.57	31.13	40.7	20.05
Merged-chr6-72347395-3	chr6	72347322	72347522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026696, exon 1 of 4)	exon (NM_026696, exon 1 of 4)	105.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	22.61	13.58	18.83	29.76	28.23	14.42	11.63	15.62	20.85	16.57	19.09	23.81
Merged-chr7-137411627-3	chr7	137411547	137411747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-891.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	71.88	45.28	70.74	61.94	67.09	69.61	46.5	81.34	73.56	52.72	103.51	60.15
Merged-chr1-181860875-3	chr1	181860786	181860986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18485.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	156.27	148.4	172.85	172.14	163.64	201.31	134.53	171.73	151.65	163.18	177.38	126.25
Merged-chr17-53567561-3	chr17	53567445	53567645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020005, exon 1 of 18)	exon (NM_020005, exon 1 of 18)	574.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	22.21	18.11	28.52	13.27	28.64	12.54	27.57	15.95	14.16	15.06	20.1	15.35
Merged-chr2-136892112-3	chr2	136892013	136892213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-55.0	NM_028834	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	139.31	130.04	103.25	141.57	148.5	144.24	119.25	144.79	224.62	158.67	251.74	112.46
Merged-chr5-88721696-3	chr5	88721578	88721778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026735, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	807.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	26.25	18.86	15.97	16.89	29.05	26.03	38.53	37.12	37.96	35.15	52.76	21.93
Merged-chr10-66937300-3	chr10	66937205	66937405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16921.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	82.37	56.09	82.15	83.66	103.91	82.16	65.77	93.84	68.25	76.32	109.04	61.4
Merged-chr9-103181175-3	chr9	103181056	103181256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	20909.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	39.98	20.63	31.95	34.99	29.46	48.29	25.24	38.22	41.7	28.12	59.29	20.05
Merged-chr6-97149892-3	chr6	97149798	97149998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1015.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	81.16	77.22	78.72	86.47	60.14	66.48	65.77	97.15	64.71	63.77	73.36	68.29
Merged-chr17-36262032-3	chr17	36261914	36262114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357889)	TTS (NM_001357889)	-4168.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	18.57	29.43	19.97	22.93	24.55	23.2	16.61	28.32	53.3	44.19	58.79	22.56
Merged-chr14-77854103-3	chr14	77854020	77854220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 2 of 5)	intron (NM_025384, intron 2 of 5)	20797.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	6.86	12.83	19.97	23.73	19.64	17.56	41.52	42.48	30.29	26.11	31.15	25.06
Merged-chr6-56714781-3	chr6	56714623	56714823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-182.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	195.44	188.9	256.71	245.34	201.69	292.56	224.55	284.66	246.65	246.03	334.65	154.44
Merged-chr7-73617277-3	chr7	73617188	73617388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58893.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	32.3	26.41	16.54	23.73	22.91	35.12	29.23	37.88	36.58	26.11	45.22	23.81
Merged-chr12-32857042-3	chr12	32856937	32857137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32921.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	51.69	49.55	92.98	84.06	85.5	77.45	86.03	129.76	69.23	57.74	96.48	62.97
Merged-chr19-34640808-3	chr19	34640716	34640916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008331)	promoter-TSS (NM_008331)	-73.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	51.28	57.85	40.5	49.47	52.77	50.17	30.23	60.7	70.41	58.24	47.23	31.64
Merged-chr18-69344387-3	chr18	69344294	69344494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-98.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	104.99	105.64	102.68	116.24	132.55	162.74	86.7	140.13	128.24	146.61	227.62	99.31
Merged-chr10-128705074-3	chr10	128704971	128705171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016756)	promoter-TSS (NM_016756)	-20.0	NM_016756	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	80.36	61.37	80.43	71.99	81.41	96.27	41.85	75.22	96.38	83.85	112.56	57.64
Merged-chr4-135315453-3	chr4	135315351	135315551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	37763.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	76.72	54.08	90.13	113.42	42.96	46.72	68.1	74.94	56.45	43.18	77.88	52.0
Merged-chr12-100778498-3	chr12	100778414	100778614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-543.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	41.19	46.03	53.62	37.0	50.73	76.83	40.52	51.17	43.27	56.24	53.77	15.98
Merged-chr5-45857848-3	chr5	45857708	45857908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-268.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	173.63	207.01	212.78	242.12	234.42	255.88	277.03	268.71	272.22	310.8	416.56	190.15
Merged-chr4-119181626-3	chr4	119181520	119181720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013848, intron 8 of 12)	intron (NM_013848, intron 8 of 12)	-7425.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	46.84	41.5	69.03	70.79	59.73	62.4	49.49	65.08	105.62	80.34	106.02	69.55
Merged-chr1-33908031-3	chr1	33907949	33908149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-176.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	47.65	39.99	56.48	41.43	49.5	40.76	27.9	47.86	42.09	43.68	57.79	23.81
Merged-chr7-109959758-3	chr7	109959655	109959855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	667.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	40.38	34.71	39.36	50.68	40.5	50.17	45.84	48.17	44.84	54.73	84.42	39.16
Merged-chr3-95982352-2	chr3	95982246	95982446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-3164.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	33.52	33.45	59.33	58.32	63.0	60.21	49.49	61.51	2.56	3.01	8.54	3.76
Merged-chr5-145178719-3	chr5	145178628	145178828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	11515.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	48.46	34.71	54.76	58.32	58.09	56.13	36.87	48.17	58.81	60.25	75.37	46.68
Merged-chr4-32238630-3	chr4	32238513	32238713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-178822.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	46.44	52.82	46.78	35.8	47.05	58.32	69.76	64.15	41.89	43.18	54.77	31.95
Merged-chr2-39190830-3	chr2	39190719	39190919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-89.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	203.51	183.62	210.5	259.42	244.64	254.62	188.67	293.83	290.31	265.61	362.29	158.2
Merged-chr9-120118389-3	chr9	120118298	120118498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144793, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	7999.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	29.07	29.43	29.66	30.97	32.32	50.17	22.59	29.58	35.6	29.62	50.75	35.09
Merged-chr10-117865837-1	chr10	117865737	117865937	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-19863.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.04	7.04	6.85	1.61	6.55	5.02	1.0	4.46	19.47	15.06	7.54	10.96
Merged-chr13-119428878-3	chr13	119428788	119428988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145457)	promoter-TSS (NM_145457)	-14.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	46.44	51.81	33.66	47.06	56.87	52.37	50.16	69.42	79.86	72.3	104.52	36.34
Merged-chr3-96104422-3	chr3	96104317	96104517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-110.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	27.05	22.39	17.68	17.7	35.18	32.3	25.58	25.4	52.12	34.65	54.77	25.69
Merged-chr7-80015557-3	chr7	80015467	80015667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9247.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	44.82	31.94	55.33	49.07	54.82	39.51	28.23	50.13	50.75	64.27	58.29	36.34
Merged-chr8-71537538-3	chr8	71537440	71537640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-103.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	70.66	82.5	92.41	79.64	88.78	128.88	61.78	69.17	94.41	95.4	84.42	60.46
Merged-chr1-39900783-3	chr1	39900671	39900871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252201)	promoter-TSS (NM_001252201)	-142.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	35.13	37.98	35.94	34.59	31.5	54.25	39.2	52.96	60.58	62.26	73.36	39.78
Merged-chr5-109558632-3	chr5	109558508	109558708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310694, intron 1 of 7)	CpG	385.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	84.8	92.06	98.12	74.81	58.91	69.93	66.43	42.65	131.58	130.55	133.16	71.42
Merged-chr7-27336104-3	chr7	27336001	27336201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175641, intron 1 of 32)	intron (NM_175641, intron 1 of 32)	1511.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	41.19	23.64	43.35	22.93	31.5	25.4	14.62	37.57	45.24	47.7	57.79	26.94
Merged-chr2-126675807-3	chr2	126675692	126675892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010249)	promoter-TSS (NM_010249)	-200.0	NR_073183	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	26.65	19.37	20.54	10.05	23.32	32.3	17.27	20.44	28.52	49.21	50.25	21.3
Merged-chr3-89861326-3	chr3	89861228	89861428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29958.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	78.34	72.19	79.29	84.46	112.91	129.51	73.08	88.37	88.12	123.52	136.17	67.67
Merged-chr17-17398868-3	chr17	17398758	17398958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3828.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	54.51	36.97	42.21	54.3	62.59	102.54	72.75	92.66	53.89	71.3	87.93	43.23
Merged-chr8-122443561-3	chr8	122443451	122443651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138656)	promoter-TSS (NM_138656)	-105.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	214.42	223.86	326.3	256.2	247.51	305.11	203.29	212.64	259.43	282.69	308.02	185.45
Merged-chr10-99460011-3	chr10	99459929	99460129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149142.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	117.1	114.95	139.76	134.33	145.23	152.71	94.0	131.19	126.08	117.49	113.56	62.03
Merged-chr8-26158768-3	chr8	26158672	26158872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199042, intron 1 of 2)	CpG	603.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	82.78	76.46	66.74	50.27	87.96	112.89	73.41	79.77	75.53	82.85	88.94	43.54
Merged-chr13-42073482-3	chr13	42073398	42073598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	21477.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	67.84	45.28	60.47	56.31	65.46	62.09	46.5	70.07	73.36	57.74	90.95	33.83
Merged-chr15-27937636-5	chr15	27937550	27937750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	88198.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	22.61	18.36	15.4	25.34	29.05	51.11	43.51	33.9	37.37	40.67	44.22	32.27
Merged-chr14-78849167-3	chr14	78849056	78849256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173758)	promoter-TSS (NM_173758)	-22.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	19.38	27.17	23.96	14.88	22.91	37.94	31.22	35.36	29.9	19.58	31.15	19.74
Merged-chr1-97319787-3	chr1	97319703	97319903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191500.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	20.59	13.08	22.25	26.95	59.73	44.84	47.17	76.35	35.21	28.62	49.75	18.17
Merged-chr1-55553588-3	chr1	55553490	55553690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	147644.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	37.15	40.5	42.78	64.75	40.5	42.96	33.88	69.59	45.24	20.08	38.69	19.42
Merged-chr19-37208316-3	chr19	37208238	37208438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	793.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	39.98	49.8	47.92	30.16	24.55	43.9	12.95	19.54	61.76	43.68	40.2	26.0
Merged-chr2-3284069-3	chr2	3283954	3284154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290370)	promoter-TSS (NM_001290370)	-158.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	341.61	327.49	318.31	347.1	385.38	435.55	292.97	368.75	445.5	529.22	570.32	288.83
Merged-chr7-145112607-3	chr7	145112497	145112697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95522.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	53.3	42.26	58.19	65.96	79.78	80.59	62.78	95.61	79.46	69.79	97.98	46.68
Merged-chr10-10476736-3	chr10	10476644	10476844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4430.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	27.05	27.67	39.36	39.42	38.86	31.36	41.52	49.85	48.39	43.18	53.26	19.74
Merged-chr13-20091396-3	chr13	20091366	20091566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	CpG	959.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	27.05	46.03	38.22	25.34	29.46	37.0	41.52	33.08	46.03	73.81	53.26	42.6
Merged-chr7-116620566-3	chr7	116620470	116620670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116201.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	47.24	33.45	57.05	50.27	64.23	52.37	38.86	48.03	63.92	53.73	49.75	33.83
Merged-chr1-153914060-3	chr1	153913986	153914186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14157.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	55.72	43.01	42.21	61.94	54.82	43.27	54.81	60.62	40.91	42.68	55.27	33.21
Merged-chr10-30674922-3	chr10	30674804	30675004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-19037.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	84.39	60.37	103.25	84.06	72.0	61.77	70.09	102.08	87.13	55.23	91.45	57.64
Merged-chr7-101302014-3	chr7	101301902	101302102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	86.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	41.99	67.91	48.49	51.08	51.14	65.54	50.82	37.82	51.73	79.83	77.88	44.17
Merged-chr5-24038392-3	chr5	24038265	24038465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7675.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	42.8	30.43	48.49	49.87	46.23	40.14	60.79	39.93	49.76	54.73	42.71	38.85
Merged-chr10-5806025-3	chr10	5805905	5806105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-540.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	211.59	218.33	245.87	228.85	251.6	266.85	201.96	224.36	305.85	274.65	307.52	164.78
Merged-chr5-121660587-3	chr5	121660528	121660728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	65.0	NM_001289543	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	28.67	27.42	21.11	23.33	38.46	32.61	22.26	26.69	43.86	26.11	34.67	20.99
Merged-chr11-104367958-3	chr11	104367842	104368042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 5 of 14)	B1_Mm|SINE|Alu	74349.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	54.51	39.74	47.35	50.27	62.59	68.67	43.85	62.5	55.07	44.69	52.26	36.97
Merged-chr9-118606726-3	chr9	118606628	118606828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133721)	promoter-TSS (NM_133721)	19.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	45.23	39.24	76.44	66.77	63.0	80.27	61.45	69.81	94.21	73.31	131.65	49.18
Merged-chr5-31048383-5	chr5	31048296	31048496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177870)	promoter-TSS (NM_177870)	166.0	NM_001177621	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	50.88	64.89	41.64	62.74	48.68	63.97	66.1	50.38	45.04	71.3	47.74	39.78
Merged-chr13-74523070-3	chr13	74522943	74523143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29093.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	12.52	21.38	18.25	23.33	26.59	21.01	25.91	17.66	21.64	17.07	27.64	19.42
Merged-chr16-94569516-3	chr16	94569405	94569605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-701.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	139.31	146.14	164.86	125.08	194.32	236.75	108.29	139.12	257.27	226.95	258.78	134.08
Merged-chr19-53303553-3	chr19	53303452	53303652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-6954.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	13.33	19.87	21.11	20.51	31.91	32.3	27.57	21.64	31.67	26.61	37.18	15.66
Merged-chr10-96459360-3	chr10	96459273	96459473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157628.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	79.55	84.26	87.85	49.07	97.78	121.67	92.34	105.79	106.21	80.34	106.53	51.69
Merged-chr9-42128173-3	chr9	42128069	42128269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3872.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	33.11	30.43	29.66	24.94	26.18	29.79	24.25	28.91	55.66	47.2	75.37	19.42
Merged-chr6-22356211-3	chr6	22356106	22356306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-125.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	204.72	177.33	202.51	170.13	198.82	216.05	191.33	278.89	231.31	233.48	341.69	150.05
Merged-chr4-59366376-3	chr4	59366281	59366481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	72252.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	39.17	37.73	70.17	51.48	94.09	46.41	65.11	86.08	52.91	66.28	78.39	39.47
Merged-chr2-79060546-3	chr2	79060456	79060656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	190878.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	46.03	33.96	55.9	28.15	36.0	37.0	19.6	65.8	58.02	61.26	63.82	31.01
Merged-chr3-103860268-3	chr3	103860156	103860356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-21.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	21.4	24.65	19.97	20.11	31.91	28.54	41.19	43.23	30.09	33.64	26.13	23.81
Merged-chr6-136449471-3	chr6	136449374	136449574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33905.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	82.37	58.86	117.51	94.11	126.0	79.65	76.73	108.45	82.81	75.32	119.09	53.57
Merged-chr3-10440071-3	chr3	10439994	10440194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	36.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	43.61	32.95	31.95	31.77	45.0	66.48	45.18	64.26	69.43	84.35	109.54	39.78
Merged-chr8-86623998-3	chr8	86623879	86624079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-64.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	159.5	131.05	166.57	169.73	200.46	189.71	165.75	203.55	227.76	256.58	376.36	163.84
Merged-chr10-63339056-3	chr10	63338957	63339157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019812)	promoter-TSS (NM_019812)	-22.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	144.56	131.8	142.61	91.7	124.78	136.4	125.89	125.94	139.65	151.13	129.64	84.27
Merged-chr10-127594682-3	chr10	127594583	127594783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 8 of 88)	MIRc|SINE|MIR	26465.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	96.1	71.43	100.97	119.45	113.73	136.09	143.17	131.92	91.46	122.51	146.72	83.64
Merged-chr11-89081418-2	chr11	89081310	89081510	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 2 of 3)	L2|LINE|L2	7569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	8.08	5.03	9.13	6.44	21.27	36.37	13.95	27.73	46.03	21.09	43.21	26.94
Merged-chr4-43957394-3	chr4	43957298	43957498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027450)	promoter-TSS (NM_027450)	-304.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	57.34	68.67	66.74	53.89	52.77	70.24	38.53	35.5	66.87	77.83	105.52	38.22
Merged-chr2-90579675-3	chr2	90579571	90579771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	CpG	976.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	40.78	54.08	30.23	19.71	23.32	97.21	49.16	18.2	59.99	70.8	51.76	27.25
Merged-chr18-36482216-3	chr18	36482113	36482313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27718.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	58.15	43.51	42.78	37.81	58.91	103.17	74.74	61.68	40.71	15.06	26.63	3.76
Merged-chr11-96413989-1	chr11	96413889	96414089	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48231.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	1.14	0.0	4.09	19.76	10.63	10.4	0.2	0.5	1.51	3.76
Merged-chr19-6057898-3	chr19	6057870	6058070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160239)	promoter-TSS (NM_001160239)	3.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	75.51	61.62	53.62	37.81	71.18	67.42	33.22	40.21	65.69	79.33	70.85	36.65
Merged-chr14-52244569-3	chr14	52244461	52244661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6989.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	85.2	108.16	134.06	98.14	129.69	123.23	80.05	114.53	114.08	112.97	165.32	82.39
Merged-chr5-21055423-3	chr5	21055324	21055524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	CpG	487.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	15.75	18.61	20.54	16.09	18.0	24.15	25.24	15.67	19.28	18.08	34.67	25.37
Merged-chr15-61983520-3	chr15	61983424	61983624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1817.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	89.64	80.99	92.98	72.4	88.37	103.17	66.43	100.32	99.13	84.86	101.0	49.5
Merged-chr10-128337652-3	chr10	128337547	128337747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026444)	promoter-TSS (NM_026444)	-80.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	150.21	105.39	114.66	100.95	141.96	188.46	116.26	117.62	160.3	152.14	159.29	83.33
Merged-chr4-46558869-3	chr4	46558742	46558942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	7598.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	120.33	83.26	143.18	90.49	122.32	113.51	93.67	145.15	98.15	91.38	135.67	87.09
Merged-chr1-65227869-3	chr1	65227776	65227976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	41191.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	32.71	27.42	80.43	71.59	51.14	41.39	73.08	117.62	39.53	30.13	50.75	39.78
Merged-chr10-13438609-3	chr10	13438507	13438707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	35789.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	26.65	16.1	51.91	55.1	14.73	16.93	15.28	37.57	19.08	8.54	25.12	16.92
Merged-chr19-24966427-3	chr19	24966330	24966530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4814.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	62.59	30.18	53.62	49.07	23.73	38.26	28.57	42.48	41.7	32.64	42.21	22.87
Merged-chr4-150914318-1	chr4	150914218	150914418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-4397.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	37.55	42.01	38.22	56.31	44.18	50.17	49.83	38.72	52.91	53.22	49.24	30.7
Merged-chr13-52565238-3	chr13	52565142	52565342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7983.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	51.69	29.43	29.66	29.76	38.46	45.78	34.88	39.98	45.24	40.67	45.73	24.75
Merged-chr3-7503449-3	chr3	7503339	7503539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	13.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	71.47	55.84	74.16	65.16	111.28	123.23	92.68	122.27	150.66	136.07	275.86	111.21
Merged-chr2-131171556-1	chr2	131171456	131171656	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027641, exon 7 of 7)	3' UTR (NM_027641, exon 7 of 7)	3254.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.81	0.25	1.14	0.4	33.55	20.07	12.95	26.72	0.39	0.0	0.0	0.63
Merged-chr1-78703117-3	chr1	78703029	78703229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44689.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	43.21	45.02	86.71	77.62	55.64	53.62	84.7	99.98	16.52	23.6	61.81	28.82
Merged-chr5-135935034-3	chr5	135934935	135935135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	67.03	77.72	56.48	67.57	84.68	84.35	53.48	65.89	101.88	116.49	104.52	63.28
Merged-chr9-13827043-3	chr9	13826959	13827159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-6.0	NR_037622	74360.0	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	178.88	169.78	213.35	178.17	212.73	209.47	159.44	203.92	220.68	210.88	260.29	114.66
Merged-chr11-118211991-3	chr11	118211906	118212106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	736.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	77.93	60.62	103.82	105.38	85.5	61.77	125.89	130.21	90.08	62.26	133.16	46.68
Merged-chr2-167742701-3	chr2	167742591	167742791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	51514.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	34.73	44.77	42.21	21.32	44.59	56.76	35.54	23.16	73.36	67.28	97.48	33.21
Merged-chr8-98996177-3	chr8	98996075	98996275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15712.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	17.36	18.61	23.96	28.15	58.09	40.14	59.46	82.85	37.76	29.12	27.13	19.11
Merged-chr9-114688703-3	chr9	114688597	114688797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146229)	promoter-TSS (NM_146229)	-134.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	100.14	93.32	82.72	67.97	96.14	141.42	74.07	82.15	170.14	205.36	176.87	87.4
Merged-chr13-3548092-3	chr13	3548001	3548201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	MLTR11A|LTR|ERVK	10026.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	18.57	16.85	38.22	43.44	44.18	26.03	51.49	46.63	24.98	36.65	46.23	17.54
Merged-chr17-17625324-3	chr17	17625213	17625413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-824.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	126.39	103.88	113.52	139.16	115.78	115.39	133.53	153.56	144.17	149.13	207.02	89.28
Merged-chr4-142079898-3	chr4	142079791	142079991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-4407.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	30.28	32.95	45.64	44.64	43.36	30.1	27.24	70.32	49.37	22.59	52.26	52.0
Merged-chr7-38061275-3	chr7	38061177	38061377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-41725.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	29.48	22.39	25.1	26.14	35.59	39.51	34.21	38.3	39.73	23.1	36.68	28.82
Merged-chr2-116975171-3	chr2	116975079	116975279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75027.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	35.94	32.7	46.78	23.73	48.68	70.87	40.86	39.06	35.99	45.69	46.23	23.49
Merged-chr14-21751369-3	chr14	21751253	21751453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359953)	promoter-TSS (NM_001359953)	-199.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	24.63	26.41	28.52	36.2	27.41	27.28	36.54	24.98	40.71	24.6	39.19	15.66
Merged-chr9-64242506-3	chr9	64242408	64242608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008927, intron 1 of 10)	MTC|LTR|ERVL-MaLR	7307.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	24.63	23.9	18.83	27.75	20.05	32.93	20.59	15.22	38.75	36.15	33.16	25.69
Merged-chr12-40223402-3	chr12	40223306	40223506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035459)	promoter-TSS (NR_035459)	42.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	310.12	333.02	294.36	372.44	440.2	447.15	333.83	397.12	480.9	517.67	702.47	250.93
Merged-chr9-25253097-3	chr9	25252992	25253192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359738, exon 1 of 13)	5' UTR (NM_001359738, exon 1 of 13)	200.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	18.57	27.42	6.85	21.32	13.09	21.64	22.59	14.52	24.78	20.08	25.12	17.54
Merged-chr2-165982700-3	chr2	165982595	165982795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9942.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	52.49	58.86	43.35	44.24	32.73	54.88	29.56	35.33	66.28	67.78	51.76	38.53
Merged-chr18-34751642-3	chr18	34751541	34751741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009860)	promoter-TSS (NM_009860)	-108.0	NM_009860	12532.0	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	149.4	140.35	172.28	169.33	179.19	221.38	95.33	171.06	214.39	201.85	235.16	129.69
Merged-chr18-73572467-3	chr18	73572370	73572570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-235.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	316.17	303.59	262.98	303.26	317.46	370.02	276.37	321.84	427.01	498.59	603.48	305.43
Merged-chr5-102070031-3	chr5	102069953	102070153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-132.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	71.47	85.77	81.0	92.91	83.46	94.39	95.0	84.67	123.72	100.42	138.69	78.63
Merged-chr7-49778795-1	chr7	49778695	49778895	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133740, intron 2 of 15)	CpG-13170	437.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	12.11	15.09	21.11	8.04	22.09	26.65	21.26	23.86	26.95	23.1	38.19	22.87
Merged-chr7-144470758-3	chr7	144470655	144470855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007803, exon 1 of 18)	5' UTR (NM_007803, exon 1 of 18)	180.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	28.67	18.86	29.09	23.73	23.73	19.13	16.61	26.58	32.06	23.1	35.68	21.3
Merged-chr10-56795453-3	chr10	56795343	56795543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	363462.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	33.52	33.2	42.21	70.79	47.87	68.05	55.8	73.6	56.45	59.25	52.76	29.76
Merged-chr12-40557892-3	chr12	40557795	40557995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	111842.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	21.8	30.43	19.4	9.25	31.5	45.15	15.94	11.5	34.42	43.18	41.71	19.74
Merged-chr11-21370740-3	chr11	21370658	21370858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-129.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	27.86	28.93	29.09	30.97	32.73	36.69	42.19	43.29	32.26	44.69	24.62	26.63
Merged-chr2-157079319-3	chr2	157079207	157079407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-42.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	22.21	20.63	21.11	15.28	31.09	36.37	16.28	22.09	31.86	24.6	30.15	14.1
Merged-chr15-24589231-3	chr15	24589120	24589320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	824544.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	125.18	125.26	144.33	168.52	140.73	136.09	110.95	158.02	140.24	145.61	129.14	71.11
Merged-chr5-21785235-3	chr5	21785136	21785336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009584)	promoter-TSS (NM_009584)	-47.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	90.85	86.27	83.86	84.06	96.96	97.52	47.83	96.0	142.99	114.48	191.45	86.46
Merged-chr17-33550473-1	chr17	33550373	33550573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_172619, exon 22 of 25)	exon (NM_172619, exon 22 of 25)	-5234.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	14.54	23.39	17.11	22.12	0.0	0.94	0.0	0.62	0.59	1.0	1.51	3.45
Merged-chr1-20941561-2	chr1	20941462	20941662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10064.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	28.67	20.37	29.66	30.16	43.36	39.82	29.56	50.92	0.39	0.0	1.0	0.63
Merged-chr13-112666820-3	chr13	112666699	112666899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6033.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	54.11	47.54	86.71	76.02	77.73	52.05	32.55	52.49	71.0	40.67	83.91	42.92
Merged-chr10-122747689-3	chr10	122747582	122747782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	68367.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	43.21	30.18	47.35	61.54	60.96	46.1	45.18	94.85	59.4	44.69	85.92	33.83
Merged-chr16-38775576-3	chr16	38775466	38775666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178924, intron 7 of 7)	intron (NM_178924, intron 7 of 7)	24637.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	38.76	25.4	63.89	64.75	49.5	22.89	71.08	73.6	47.01	33.64	80.4	40.1
Merged-chr14-122009692-3	chr14	122009585	122009785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	ORR1D2|LTR|ERVL-MaLR	-24989.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	92.47	81.5	93.55	152.43	91.23	92.19	94.0	139.32	94.61	74.81	172.35	77.69
Merged-chr5-130171701-3	chr5	130171608	130171808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199059)	promoter-TSS (NM_001199059)	-111.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	225.72	258.07	229.32	200.7	317.87	341.17	205.61	230.22	273.2	311.31	375.86	178.88
Merged-chr8-22653404-3	chr8	22653333	22653533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011130)	promoter-TSS (NM_011130)	4.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	32.3	29.93	25.67	37.81	37.23	46.1	16.94	32.05	44.45	46.19	44.22	34.77
Merged-chrX-151521096-3	chrX	151521015	151521215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177201, exon 1 of 19)	5' UTR (NM_177201, exon 1 of 19)	443.0	NM_001113354	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	57.34	73.95	69.03	50.68	74.05	80.27	50.82	68.75	94.61	95.4	108.03	56.39
Merged-chr3-53017132-3	chr3	53017036	53017236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026225)	promoter-TSS (NM_026225)	87.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	47.24	60.12	48.49	64.35	47.05	66.48	101.31	73.99	55.66	61.76	64.82	36.34
Merged-chr11-26210213-3	chr11	26210134	26210334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	CpG	342.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	44.01	44.52	25.67	51.88	58.5	35.43	67.76	48.98	36.58	25.11	42.71	20.68
Merged-chr17-42887636-3	chr17	42887529	42887729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11205.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	22.21	28.42	44.5	28.56	33.14	38.26	23.92	32.8	48.78	38.16	38.69	23.81
Merged-chr19-7019457-3	chr19	7019366	7019566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	3.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	60.57	45.78	99.26	59.93	101.05	84.66	59.46	84.73	86.35	68.79	85.92	43.86
Merged-chr8-72135218-3	chr8	72135157	72135357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001491)	promoter-TSS (NM_001001491)	-35.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	25.04	15.85	22.82	16.89	46.23	40.76	41.85	43.57	15.34	24.6	32.16	12.22
Merged-chr8-70610853-3	chr8	70610754	70610954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2540.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	58.95	39.24	62.18	39.42	54.41	58.32	25.24	31.74	57.63	43.68	64.32	51.69
Merged-chr4-59380033-1	chr4	59379933	59380133	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 7 of 16)	intron (NM_001163288, intron 7 of 16)	58600.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.23	4.53	7.99	7.24	2.45	2.82	11.29	11.05	6.69	2.51	13.06	5.64
Merged-chr7-101933965-3	chr7	101933860	101934060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027053)	promoter-TSS (NM_027053)	-103.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	116.7	128.28	145.47	125.49	162.41	180.3	81.38	157.57	169.15	144.61	177.88	117.16
Merged-chr18-56432040-3	chr18	56431951	56432151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-81.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	72.68	48.29	66.74	69.18	80.59	71.81	66.1	78.11	54.29	51.21	109.04	58.89
Merged-chr11-100622908-3	chr11	100622832	100623032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-23.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	49.67	49.55	47.92	45.85	58.5	58.01	43.85	38.55	94.21	77.32	107.03	46.36
Merged-chr6-83008796-3	chr6	83008693	83008893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	24678.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	66.63	56.34	79.29	82.05	66.68	81.53	57.47	85.12	93.62	75.82	110.55	71.74
Merged-chr11-32911971-2	chr11	32911866	32912066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-87372.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	37.15	39.49	61.61	52.69	50.32	24.15	34.88	51.93	1.97	0.0	0.0	0.31
Merged-chr9-120826406-2	chr9	120826267	120826467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88883.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	43.21	38.48	75.3	43.84	75.68	71.49	44.84	56.5	0.98	2.01	0.0	0.31
Merged-chr4-117019430-3	chr4	117019333	117019533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355225)	promoter-TSS (NM_001355225)	31.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	46.84	27.42	38.22	36.6	46.64	42.02	23.92	39.53	44.45	41.17	42.21	29.13
Merged-chr1-161735014-3	chr1	161734895	161735095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53500.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	32.3	49.05	51.91	70.79	27.41	29.48	33.55	34.37	37.37	24.6	51.76	22.56
Merged-chr1-34011302-5	chr1	34011211	34011411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-514.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	16.96	18.86	23.96	20.11	13.5	18.5	25.24	21.62	28.52	21.09	20.6	14.72
Merged-chr1-152531896-3	chr1	152531771	152531971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	93346.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	14.13	18.86	34.8	30.97	33.55	24.15	32.55	46.91	28.72	35.65	24.62	21.3
Merged-chr7-25282067-3	chr7	25281971	25282171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-108.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	165.56	177.58	283.52	238.5	207.42	259.01	188.67	229.15	256.09	214.4	345.71	151.31
Merged-chr6-135188328-3	chr6	135188217	135188417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040296)	promoter-TSS (NR_040296)	-163.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	58.15	54.08	70.74	46.25	45.41	80.27	58.46	53.89	42.29	48.7	74.37	60.46
Merged-chrX-50635370-3	chrX	50635245	50635445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015505)	promoter-TSS (NR_015505)	-24.0	NR_015505	103012.0	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	16.56	22.64	22.25	22.52	21.68	26.03	32.22	24.84	21.44	19.08	34.67	27.88
Merged-chr12-100022721-3	chr12	100022614	100022814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	58215.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	41.59	35.72	62.18	47.46	58.5	51.11	46.84	62.47	53.11	42.18	55.27	30.07
Merged-chr6-124818053-3	chr6	124817943	124818143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326594, intron 15 of 19)	intron (NM_001326594, intron 15 of 19)	-3747.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	18.57	15.59	29.66	16.89	32.32	21.01	28.57	41.36	29.9	25.11	46.23	24.75
Merged-chr13-67108699-3	chr13	67108593	67108793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5335.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	105.79	90.05	99.83	92.51	131.32	123.86	82.71	140.44	141.03	130.55	186.92	74.56
Merged-chr18-74207846-3	chr18	74207728	74207928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-10.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	63.4	52.32	78.15	51.88	70.77	96.27	47.5	73.54	70.61	60.75	74.87	38.53
Merged-chr8-60890363-3	chr8	60890253	60890453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357270)	promoter-TSS (NM_001357270)	-40.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	214.42	175.06	171.14	209.14	245.05	286.61	205.95	303.76	252.35	221.93	348.72	160.08
Merged-chr1-186855719-2	chr1	186855615	186855815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106357.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	75.91	64.39	116.94	135.54	1.23	2.51	4.65	6.87	65.69	51.21	78.39	50.75
Merged-chr7-79935748-3	chr7	79935656	79935856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-492.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	80.36	51.06	72.45	63.55	101.05	97.83	60.79	65.08	80.84	93.39	102.0	53.26
Merged-chr4-156200882-3	chr4	156200792	156200992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-74.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	65.82	70.68	68.45	47.86	46.64	76.83	27.24	36.98	104.44	97.41	60.3	41.04
Merged-chr19-41482730-3	chr19	41482637	41482837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42515.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	35.94	39.49	45.64	25.34	38.86	45.15	36.21	36.34	33.83	50.21	41.71	23.49
Merged-chr13-24761527-3	chr13	24761428	24761628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020567, intron 1 of 6)	GC_rich|Low_complexity|Low_complexity	409.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	43.21	35.47	38.22	49.47	62.59	62.71	53.15	53.36	96.57	85.86	89.44	49.5
Merged-chr14-89746878-1	chr14	89746778	89746978	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149346.0	NR_002862	328451.0	Mm.320571	NR_002862		Gm5088	EG328451|Pabpc4l	poly(A)-binding protein, cytoplasmic pseudogene	pseudo	0.4	0.5	0.57	0.0	0.0	0.31	1.33	0.31	30.49	18.58	35.17	21.3
Merged-chr16-94370818-3	chr16	94370671	94370871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	32.0	NM_009441	22129.0	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	44.01	24.4	23.39	25.74	40.91	42.65	22.92	25.21	50.55	63.27	52.26	56.7
Merged-chr3-123335076-3	chr3	123334979	123335179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	50911.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	27.05	24.15	39.36	32.98	36.0	29.48	45.51	50.83	39.73	32.13	42.71	16.92
Merged-chr9-108567949-3	chr9	108567852	108568052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-367.0	NR_029577	387186.0		NR_029577	ENSMUSG00000105497	Mir191	Mirn191|mir-191|mmu-mir-191	microRNA 191	ncRNA	69.45	71.43	51.91	20.11	60.14	104.73	27.9	29.44	74.74	76.32	68.84	40.1
Merged-chr3-100969727-3	chr3	100969608	100969808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013026)	promoter-TSS (NM_001013026)	-45.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	101.76	80.99	81.58	69.58	127.64	124.49	81.71	138.28	138.86	102.93	172.85	63.59
Merged-chr11-116024429-5	chr11	116024316	116024516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	88.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	191.4	158.46	144.33	124.68	134.19	239.57	95.0	63.48	189.61	211.39	181.4	92.1
Merged-chr13-59656768-3	chr13	59656667	59656867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035122, intron 3 of 9)	RMER15|LTR|ERVL	19017.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	20.19	16.6	37.08	23.73	18.0	21.01	25.91	18.87	23.8	16.07	34.67	19.42
Merged-chr13-56703675-3	chr13	56703547	56703747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-21.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	29.48	33.45	24.53	16.89	30.68	40.76	21.59	22.54	30.09	34.65	32.16	12.53
Merged-chr3-87376873-3	chr3	87376774	87376974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	487.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	34.73	28.17	39.36	31.37	37.64	32.93	25.24	36.31	42.29	44.69	48.24	25.69
Merged-chr3-158036587-3	chr3	158036476	158036676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	63.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	78.74	74.7	67.31	74.0	109.23	89.05	74.74	87.28	126.08	122.51	100.5	78.94
Merged-chr12-91765750-3	chr12	91765635	91765835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	20701.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	12.52	12.83	19.4	14.88	24.55	16.62	17.61	28.51	20.26	12.55	26.13	20.36
Merged-chr3-53463696-3	chr3	53463592	53463792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-125.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	112.26	79.48	85.0	69.98	96.96	124.8	86.03	92.55	122.93	157.66	154.76	86.77
Merged-chr4-133132276-3	chr4	133132177	133132377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	1644.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	43.21	44.52	34.8	30.57	29.05	45.15	26.91	31.82	32.65	29.12	22.61	15.04
Merged-chr7-68830078-1	chr7	68829978	68830178	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80840.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	2.02	4.78	7.42	7.24	4.91	5.64	6.64	8.61	10.23	1.51	6.53	5.95
Merged-chr3-107333174-3	chr3	107333069	107333269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001045807, exon 1 of 2)	5' UTR (NM_001045807, exon 1 of 2)	120.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	213.2	238.7	213.35	234.48	230.33	314.2	219.9	240.76	324.54	298.25	354.75	183.57
Merged-chr17-6655365-3	chr17	6655195	6655395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166630, intron 1 of 4).2	CpG	536.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	30.28	39.99	23.39	32.18	34.77	30.73	27.57	14.55	31.86	32.64	41.71	20.99
Merged-chr14-63076514-3	chr14	63076353	63076553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21380.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	56.94	43.51	91.84	80.04	74.87	87.8	84.7	96.14	80.05	46.7	103.01	47.3
Merged-chr12-110498745-3	chr12	110498643	110498843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13004.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	17.36	24.15	42.78	32.18	30.27	36.37	13.29	35.69	21.24	23.1	44.22	21.3
Merged-chr15-85036995-3	chr15	85036886	85037086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133750)	promoter-TSS (NM_133750)	-76.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	183.32	182.61	183.69	177.77	233.19	208.21	149.14	183.28	210.65	216.41	221.09	126.25
Merged-chr1-187215424-3	chr1	187215307	187215507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	39.0	NM_028848	74717.0	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	33.52	50.05	53.05	65.96	38.46	39.2	55.8	49.96	42.29	44.69	57.28	39.78
Merged-chr2-129592080-3	chr2	129591987	129592187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291020)	promoter-TSS (NM_001291020)	-752.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	77.93	72.44	77.01	55.5	92.87	111.32	60.12	72.65	102.67	93.89	93.46	80.82
Merged-chr6-108478303-2	chr6	108478208	108478408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-11435.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	40.78	26.66	47.35	55.1	29.46	45.78	38.53	42.31	7.47	2.51	2.01	4.39
Merged-chr5-25222937-3	chr5	25222856	25223056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144908)	promoter-TSS (NM_144908)	84.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	94.89	98.1	97.55	90.9	75.28	103.79	109.62	85.18	110.34	124.52	134.16	121.55
Merged-chr2-13574090-7	chr2	13574024	13574224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011701)	promoter-TSS (NM_011701)	-187.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	26.65	21.38	33.66	30.97	32.73	34.49	23.58	26.8	32.06	36.65	51.76	20.05
Merged-chr6-83632060-3	chr6	83631964	83632164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24052.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	107.41	78.48	102.68	166.11	118.23	80.59	154.46	184.46	91.66	61.76	134.67	93.98
Merged-chr3-61344257-3	chr3	61344154	61344354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	54.51	50.05	17.68	18.1	46.64	56.44	39.53	25.15	54.88	79.33	40.2	16.6
Merged-chrX-73008254-3	chrX	73008140	73008340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109043, intron 12 of 18)	intron (NM_001109043, intron 12 of 18)	16161.0	NR_035517	100316779.0		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	58.55	67.66	65.03	53.09	66.27	81.22	56.47	70.26	98.34	94.4	96.48	68.29
Merged-chr6-136805052-3	chr6	136804960	136805160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-629.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	40.78	32.95	37.08	45.05	56.05	47.66	38.86	65.24	40.91	43.68	50.75	34.77
Merged-chr17-47766805-3	chr17	47766705	47766905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18939.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	23.82	18.61	65.03	29.36	49.5	59.27	31.89	44.5	56.84	51.21	53.77	31.01
Merged-chr16-32434297-3	chr16	32434199	32434399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	3069.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	13.33	26.16	24.53	30.57	36.0	50.8	19.93	42.25	46.22	23.6	77.38	30.07
Merged-chr9-120116240-3	chr9	120116137	120116337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5838.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	51.69	51.81	86.14	48.67	49.09	68.67	26.57	43.88	84.97	70.29	97.98	43.86
Merged-chr4-153957205-3	chr4	153957093	153957293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-44.0	NM_175287	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	138.5	102.37	104.39	106.99	131.73	115.08	104.97	108.59	169.74	170.21	162.8	112.46
Merged-chr16-17405895-3	chr16	17405790	17405990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023348)	promoter-TSS (NM_023348)	-110.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	156.27	181.85	191.1	147.21	189.41	194.73	128.88	180.93	240.94	250.55	282.9	150.05
Merged-chrM-3034-2	chrM	2932	3132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											41207.35	42934.82	48318.25	54219.34	38612.42	46777.54	44605.57	62614.82	0.0	0.0	0.0	0.0
Merged-chr6-148405866-1	chr6	148405766	148405966	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	38486.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	1.21	1.76	9.13	2.41	3.27	1.88	1.99	2.55	24.39	26.11	36.18	22.56
Merged-chr1-181138884-2	chr1	181138770	181138970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026171, intron 4 of 22)	intron (NM_026171, intron 4 of 22)	5334.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	20.59	28.42	49.06	18.9	1.64	0.63	0.66	3.56	27.54	7.03	17.59	13.47
Merged-chr7-67222539-3	chr7	67222440	67222640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175215)	promoter-TSS (NM_175215)	-4.0	NR_131043	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	77.12	75.21	91.27	72.8	103.5	119.78	58.13	88.57	116.05	135.57	175.37	77.06
Merged-chr2-170509001-3	chr2	170508888	170509088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2242.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	23.82	16.85	17.68	27.35	27.0	27.59	27.24	36.7	29.5	49.21	32.66	19.42
Merged-chrX-13070865-4	chrX	13070788	13070988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009481)	promoter-TSS (NM_009481)	-610.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	34.32	28.17	35.37	35.39	24.14	29.16	25.91	44.38	34.42	33.64	58.79	28.82
Merged-chr11-117779594-3	chr11	117779491	117779691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	57.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	94.08	69.17	75.3	98.94	98.59	132.64	110.61	103.65	105.42	85.86	116.58	86.46
Merged-chr7-90068075-3	chr7	90067978	90068178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38919.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	37.55	30.18	55.9	63.55	68.32	70.24	63.11	95.89	37.96	30.63	57.79	24.43
Merged-chr1-171222610-3	chr1	171222499	171222699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-85.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	167.98	152.93	174.56	152.03	161.6	274.38	165.42	198.87	209.08	251.55	231.64	135.96
Merged-chr4-99715608-3	chr4	99715519	99715719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-11.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	113.06	98.85	98.69	106.99	113.32	124.8	101.98	131.44	179.77	136.57	200.99	103.69
Merged-chr4-41464373-1	chr4	41464273	41464473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	475.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	9.29	4.02	18.25	22.52	3.68	7.21	8.64	12.28	21.24	17.57	22.61	16.6
Merged-chr8-71603177-2	chr8	71603089	71603289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166213, intron 8 of 14)	intron (NM_001166213, intron 8 of 14)	5543.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	91.26	120.48	83.86	56.31	6.14	7.53	4.32	2.69	132.17	145.61	117.08	36.65
Merged-chr7-127080257-3	chr7	127080162	127080362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11174.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	20.19	20.37	27.38	20.51	24.96	29.16	33.22	35.78	75.33	62.26	136.68	51.38
Merged-chr15-8512043-2	chr15	8511944	8512144	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67581.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	8.48	5.03	4.56	20.11	23.73	22.26	24.25	32.97	20.85	17.07	36.18	22.56
Merged-chr1-167349978-3	chr1	167349894	167350094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	3.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	75.11	59.11	75.3	78.03	72.82	88.74	112.61	94.43	77.3	108.45	126.12	62.65
Merged-chr11-77462512-3	chr11	77462405	77462605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1408.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	39.57	31.44	34.8	29.36	32.32	56.44	22.92	31.77	35.99	35.15	43.21	15.66
Merged-chr14-49894958-1	chr14	49894858	49895058	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146494, exon 2 of 2)	exon (NM_146494, exon 2 of 2)	6983.0	NM_146494	258487.0	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	0.0	0.75	0.0	0.8	2.86	0.63	4.98	3.95	46.81	42.68	39.7	20.68
Merged-chr15-81081496-3	chr15	81081369	81081569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	23578.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	32.71	23.39	33.09	27.75	31.09	40.14	38.2	39.31	58.02	22.09	56.28	30.7
Merged-chr5-122051671-3	chr5	122051588	122051788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1837.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	31.09	21.13	50.77	27.75	28.64	29.16	36.21	35.72	38.55	28.62	33.16	27.25
Merged-chr13-56181697-3	chr13	56181600	56181800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2815.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	93.28	69.17	123.79	103.37	77.73	90.94	83.04	128.36	99.92	53.73	87.93	50.75
Merged-chr3-90080287-3	chr3	90080169	90080369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	CpG	748.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	42.4	49.3	32.52	30.16	39.68	63.03	42.52	22.18	41.7	61.76	53.26	31.33
Merged-chr16-23314460-1	chr16	23314360	23314560	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	L1_Mus3|LINE|L1	23990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	15.75	12.83	4.56	9.25	15.55	16.93	8.3	4.93	20.85	22.59	16.08	9.4
Merged-chrUn_JH584304-103551-1	chrUn_JH584304	103451	103651	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-43862.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	37.17	49.21	39.19	54.82
Merged-chr10-80158530-3	chr10	80158416	80158616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021565)	TTS (NM_021565)	8834.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	90.45	55.84	67.31	53.49	94.5	113.83	61.45	76.26	96.77	76.32	95.97	55.13
Merged-chr10-62556664-3	chr10	62556557	62556757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	82.78	84.26	132.35	120.26	85.91	95.95	79.06	131.02	108.77	116.49	171.85	79.88
Merged-chr6-82997914-3	chr6	82997814	82998014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	35557.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	31.09	25.4	49.06	39.82	41.73	51.43	38.2	69.03	53.7	52.22	43.72	44.8
Merged-chr14-59365493-3	chr14	59365385	59365585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199015)	promoter-TSS (NM_199015)	5.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	71.88	74.7	103.82	142.38	107.59	102.22	96.66	134.55	112.9	118.5	138.69	78.94
Merged-chr6-108836384-3	chr6	108836279	108836479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7738.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	57.34	43.51	81.58	31.37	72.82	96.58	71.08	58.46	66.68	82.35	78.89	51.06
Merged-chr11-100325209-3	chr11	100325059	100325259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5210.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	56.94	37.48	47.92	34.59	56.87	63.03	27.24	42.9	45.24	44.19	61.81	37.59
Merged-chr15-25441225-3	chr15	25441115	25441315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	27023.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	62.59	45.78	37.65	37.81	37.23	52.68	15.94	34.35	39.34	45.69	35.17	19.11
Merged-chr11-86587647-1	chr11	86587547	86587747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-3489.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	8.48	8.8	19.4	9.25	16.36	11.29	4.98	11.36	7.28	10.54	19.6	10.34
Merged-chr18-67258503-3	chr18	67258394	67258594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-12664.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	6.86	16.85	23.39	25.34	20.46	25.71	11.63	14.8	24.39	26.61	32.16	22.87
Merged-chrUn_JH584304-68983-1	chrUn_JH584304	68883	69083	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-9294.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	35.4	49.21	30.15	37.59
Merged-chr10-51490865-3	chr10	51490757	51490957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013532)	promoter-TSS (NM_013532)	-41.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	81.16	72.94	70.74	74.41	84.68	117.59	46.5	39.14	89.89	93.39	89.94	55.45
Merged-chr19-55866407-3	chr19	55866308	55866508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-28913.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	33.92	14.09	41.64	34.19	19.23	25.71	28.23	46.04	20.46	22.59	36.18	27.25
Merged-chr7-90442794-3	chr7	90442726	90442926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	45.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	136.48	120.23	116.94	125.49	105.55	131.7	120.58	103.74	153.22	135.07	150.24	87.09
Merged-chr17-17394493-3	chr17	17394390	17394590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8196.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	59.36	41.5	49.06	63.95	46.64	53.62	43.51	69.14	67.07	47.2	76.88	31.95
Merged-chr17-65951184-3	chr17	65951058	65951258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023053)	promoter-TSS (NM_023053)	29.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	29.88	25.4	16.54	22.52	33.14	38.57	29.23	32.33	45.43	52.22	45.22	20.36
Merged-chr17-15705052-1	chr17	15704952	15705152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	85.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	89.64	95.33	43.35	90.49	57.68	104.42	73.08	69.36	94.41	87.87	102.51	48.87
Merged-chr6-96087164-1	chr6	96087064	96087264	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-25990.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	4.04	3.02	1.14	2.41	20.46	19.44	32.55	34.09	4.92	1.51	5.53	5.95
Merged-chr7-127851055-3	chr7	127850958	127851158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	9250.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	39.17	28.42	27.38	25.34	56.87	113.83	87.36	96.98	96.77	94.4	131.15	76.12
Merged-chr8-68590753-1	chr8	68590653	68590853	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172753, intron 2 of 9)	intron (NM_172753, intron 2 of 9)	144393.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	1.62	0.0	6.85	2.82	6.14	1.25	1.99	5.83	24.39	30.63	34.17	35.71
Merged-chr10-31313476-3	chr10	31313368	31313568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	63.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	58.95	113.94	57.62	117.44	105.14	109.44	150.81	111.84	91.66	112.47	137.68	77.38
Merged-chr18-82976854-3	chr18	82976766	82976966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-56306.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	59.36	60.87	73.59	63.55	31.91	31.67	31.22	63.62	32.85	24.6	61.3	37.28
Merged-chr17-36032754-3	chr17	36032654	36032854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010398)	promoter-TSS (NM_010398)	-53.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	43.21	54.33	53.05	62.74	134.19	119.78	73.41	88.49	75.92	65.78	80.4	56.7
Merged-chr13-112344624-3	chr13	112344511	112344711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168405)	TTS (NM_001168405)	56093.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	62.18	50.31	85.57	117.04	82.64	76.83	111.28	86.38	65.1	64.77	96.48	45.11
Merged-chr11-22971993-3	chr11	22971889	22972089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011663)	promoter-TSS (NM_011663)	-16.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	25.84	38.48	30.8	31.77	47.05	36.37	28.9	30.93	44.06	54.73	56.78	28.82
Merged-chr16-10785622-3	chr16	10785524	10785724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-88.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	87.62	65.4	82.15	65.56	81.82	90.31	43.18	73.71	108.57	111.47	87.43	62.97
Merged-chr12-104186298-3	chr12	104186189	104186389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28165.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	45.23	68.42	100.97	99.34	106.37	121.04	128.55	148.51	118.41	120.0	154.26	109.33
Merged-chr4-133659634-3	chr4	133659545	133659745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13002.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	28.67	11.07	23.39	26.14	40.09	23.52	32.55	34.96	17.31	24.6	22.11	20.36
Merged-chr1-51480620-3	chr1	51480517	51480717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2218.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	35.13	23.64	45.64	36.2	52.37	48.6	32.22	45.93	36.78	42.18	58.29	28.19
Merged-chr16-92847966-3	chr16	92847875	92848075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21901.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	14.54	12.83	27.95	16.89	29.05	37.63	18.27	26.75	35.4	32.64	39.19	22.24
Merged-chr9-116099144-3	chr9	116099043	116099243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76220.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	27.86	13.83	29.09	28.56	29.05	21.32	33.22	34.35	15.34	26.11	21.1	17.54
Merged-chr3-30995494-1	chr3	30995394	30995594	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	-277.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	23.82	22.13	22.82	27.75	33.55	38.57	17.94	33.95	30.49	39.67	45.73	26.63
Merged-chr9-61251893-3	chr9	61251796	61251996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41913.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	39.57	19.62	36.51	30.57	22.09	25.4	17.27	30.7	16.33	20.59	35.17	12.22
Merged-chr16-24426403-3	chr16	24426300	24426500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-21691.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	33.52	29.43	36.51	28.15	16.77	38.57	21.92	26.69	31.47	20.08	33.16	22.87
Merged-chr17-5190262-2	chr17	5190156	5190356	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195182.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	41.19	36.97	56.48	49.07	61.77	61.77	48.83	51.56	55.07	79.83	91.45	53.26
Merged-chr7-46546667-3	chr7	46546586	46546786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 9 of 10)	MTE2a|LTR|ERVL-MaLR	93121.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	32.3	21.38	44.5	26.14	35.59	22.58	21.59	36.7	32.45	15.57	46.23	19.74
Merged-chrX-169036680-3	chrX	169036568	169036768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178754)	promoter-TSS (NM_178754)	57.0	NR_109847	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	28.27	32.95	23.96	46.66	31.5	31.36	40.19	41.97	21.05	16.57	25.12	16.29
Merged-chr19-46761433-3	chr19	46761343	46761543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-166.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	230.57	218.58	219.63	206.73	226.64	303.54	161.44	204.17	237.6	208.37	236.17	135.64
Merged-chr9-20976807-3	chr9	20976715	20976915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-22.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	20.19	27.42	17.11	20.51	37.23	43.27	15.28	38.5	40.91	22.09	35.68	25.06
Merged-chr4-148558545-3	chr4	148558498	148558698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355489)	promoter-TSS (NM_001355489)	-115.0	NM_001355489	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	14.54	14.59	13.69	6.03	9.82	12.86	19.27	13.35	24.98	29.62	24.62	26.94
Merged-chr7-25706995-3	chr7	25706898	25707098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12055.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	103.37	101.62	124.93	163.29	137.05	125.43	149.81	149.27	122.14	139.59	153.76	98.99
Merged-chr2-3664316-3	chr2	3664199	3664399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49159.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	53.7	33.2	55.33	49.87	106.37	103.17	59.46	91.65	76.91	70.8	82.91	40.72
Merged-chr4-43559885-3	chr4	43559791	43559991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2692.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	73.89	55.08	76.44	84.46	56.46	58.64	50.49	53.64	90.87	59.75	89.94	50.44
Merged-chr4-44756642-3	chr4	44756530	44756730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	71.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	107.81	113.19	127.78	109.4	128.46	123.86	72.41	124.37	148.7	172.72	228.63	86.46
Merged-chr15-55381851-3	chr15	55381753	55381953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	74103.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	82.37	56.34	104.96	88.48	117.0	95.33	102.97	122.5	108.97	110.97	150.74	74.24
Merged-chr11-97187153-3	chr11	97187059	97187259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008379, intron 2 of 21)	CpG	733.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	131.64	113.19	154.59	110.2	125.59	136.72	120.58	133.57	135.32	136.57	199.99	86.46
Merged-chr15-100304213-3	chr15	100304114	100304314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-603.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	54.92	38.23	49.06	31.37	51.96	42.02	33.55	60.36	49.96	31.63	44.22	46.36
Merged-chr17-46496768-3	chr17	46496678	46496878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207161)	promoter-TSS (NM_207161)	-11.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	23.02	17.86	18.83	18.1	33.14	35.12	25.91	32.8	24.59	31.13	29.65	17.54
Merged-chr3-88526403-3	chr3	88526306	88526506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5989.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	21.0	22.13	21.11	15.28	27.41	28.22	10.96	24.87	34.22	29.62	75.37	18.17
Merged-chr8-77549432-3	chr8	77549370	77549570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081240)	promoter-TSS (NM_001081240)	73.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	91.66	82.75	106.1	77.22	81.41	116.96	88.03	73.96	81.23	89.88	85.42	51.69
Merged-chr8-126590260-3	chr8	126590172	126590372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3164.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	21.4	21.38	55.9	49.87	34.36	42.02	49.83	54.53	52.12	36.65	68.84	39.47
Merged-chr4-141672495-3	chr4	141672408	141672608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8393.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	29.48	27.17	30.23	26.55	69.96	64.28	34.21	39.87	38.35	53.73	57.28	35.4
Merged-chr7-19562343-3	chr7	19562186	19562386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_199149, exon 1 of 13)	5' UTR (NM_199149, exon 1 of 13)	112.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	14.94	30.69	25.1	22.93	20.86	23.2	28.57	18.93	17.9	35.65	27.13	18.17
Merged-chr7-25703971-3	chr7	25703875	25704075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15078.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	44.01	43.26	64.46	65.16	53.18	73.69	69.42	70.29	68.45	49.71	100.5	33.52
Merged-chr10-99263160-3	chr10	99263059	99263259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-72.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	226.93	200.22	205.93	234.48	240.55	225.46	209.27	235.21	216.16	217.41	231.64	114.97
Merged-chr1-193201613-3	chr1	193201491	193201691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153137)	promoter-TSS (NM_153137)	-45.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	48.05	56.09	85.0	66.77	66.27	64.6	57.47	93.34	61.37	50.21	97.48	45.74
Merged-chr13-88459958-2	chr13	88459860	88460060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-361512.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	29.07	19.37	18.83	26.95	32.73	30.1	14.28	21.62	49.37	39.16	40.7	18.17
Merged-chrX-36795600-3	chrX	36795509	36795709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007451)	promoter-TSS (NM_007451)	12.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	64.61	70.43	85.0	88.89	75.68	95.33	57.47	65.1	117.42	60.25	126.63	64.53
Merged-chr18-56467371-3	chr18	56467275	56467475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35243.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	18.17	19.37	31.95	26.55	13.91	18.19	13.62	27.2	27.73	24.1	25.63	25.69
Merged-chr6-114643151-3	chr6	114643066	114643266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028835)	promoter-TSS (NM_028835)	69.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	36.34	32.95	31.38	21.32	22.5	38.26	20.26	24.25	34.22	29.12	35.17	20.99
Merged-chr19-8774595-3	chr19	8774514	8774714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028418)	promoter-TSS (NR_028418)	129.0	NR_015538	100039957.0	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	50.07	59.86	42.21	51.08	40.09	74.63	38.86	28.54	54.48	64.77	33.67	39.47
Merged-chr10-83645209-3	chr10	83645109	83645309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 1 of 20)	intron (NM_145220, intron 1 of 20)	3455.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	60.57	44.02	77.01	67.97	77.73	43.27	71.42	106.43	37.37	57.74	77.38	52.63
Merged-chr11-115187338-3	chr11	115187238	115187438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	-22.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	148.19	126.02	136.91	129.91	171.82	195.98	119.91	127.49	174.46	222.93	210.04	120.92
Merged-chr3-139042157-3	chr3	139042067	139042267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	33034.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	39.57	29.93	35.37	41.43	31.09	37.32	35.54	27.45	47.6	33.14	42.71	19.42
Merged-chr12-35983660-3	chr12	35983530	35983730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9295.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	29.07	31.44	39.36	45.85	41.32	34.81	37.54	54.87	17.9	31.63	44.22	18.48
Merged-chr10-51455564-1	chr10	51455464	51455664	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25048.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.46	3.77	8.56	11.26	21.27	9.41	15.28	10.01	21.44	10.04	9.04	5.95
Merged-chr17-72918916-2	chr17	72918797	72918997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	592.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	16.96	18.36	17.68	24.94	45.41	37.94	26.24	42.31	29.5	17.07	23.11	20.99
Merged-chr7-141215775-3	chr7	141215664	141215864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-96.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	33.52	28.17	25.1	42.63	48.68	46.1	23.58	27.14	44.65	52.72	53.77	26.63
Merged-chr9-25167620-3	chr9	25167526	25167726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15845.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	22.21	18.11	22.25	16.89	31.09	40.76	21.26	28.18	46.62	54.73	39.19	29.76
Merged-chr6-87546994-3	chr6	87546912	87547112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13753.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	15.75	17.86	15.97	16.49	13.5	19.76	24.25	25.29	29.31	32.13	25.63	15.35
Merged-chr4-129461461-3	chr4	129461357	129461557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-222.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	192.61	177.08	211.64	170.13	247.92	241.14	149.48	207.03	240.16	258.58	231.64	130.01
Merged-chr16-97535126-3	chr16	97535037	97535237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-944.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	100.55	101.11	135.77	125.49	128.05	127.31	114.6	134.08	148.5	125.02	141.2	97.74
Merged-chr1-131053378-3	chr1	131053267	131053467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008551)	TTS (NM_008551)	33522.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	53.7	54.83	39.36	51.48	37.23	42.65	29.9	53.16	44.65	53.22	60.3	28.19
Merged-chr7-25250054-3	chr7	25249970	25250170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	CpG	688.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	37.96	37.23	21.68	28.15	43.77	43.59	29.23	36.17	45.83	35.65	59.29	25.69
Merged-chr7-55909754-3	chr7	55909659	55909859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	MLT1C|LTR|ERVL-MaLR	52734.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	81.97	81.5	108.39	102.96	108.0	110.06	88.36	124.32	103.26	97.91	131.65	78.63
Merged-chr13-14039604-3	chr13	14039507	14039707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130788)	promoter-TSS (NR_130788)	31.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	44.42	69.92	55.9	65.96	60.55	59.58	87.36	75.93	57.43	77.32	78.39	56.7
Merged-chr14-122983317-3	chr14	122983170	122983370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	13.0	NM_001360598	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	79.95	89.29	75.87	125.49	103.5	102.22	130.88	142.04	101.29	116.49	143.21	71.11
Merged-chrX-98860391-3	chrX	98860276	98860476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313755, intron 2 of 23)	intron (NM_001313755, intron 2 of 23)	30649.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	35.13	27.17	22.82	41.43	38.86	32.93	37.87	47.58	44.06	39.16	56.78	22.56
Merged-chrX-20701516-3	chrX	20701408	20701608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2401.0	NM_001358931	236733.0	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	19.79	19.62	34.23	37.0	33.14	22.26	16.94	33.93	29.5	25.11	25.63	19.42
Merged-chr1-194995401-3	chr1	194995302	194995502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18443.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	123.16	116.71	181.41	159.27	132.14	165.25	110.28	211.29	169.74	154.15	279.88	94.92
Merged-chr1-171366097-1	chr1	171365997	171366197	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4076.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	2.02	0.0	1.14	0.8	0.41	0.31	1.66	0.08	51.93	49.21	74.37	42.6
Merged-chr4-133756878-3	chr4	133756791	133756991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3280.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	45.23	58.61	41.07	32.18	47.46	58.95	51.15	33.14	49.17	54.23	48.24	32.89
Merged-chr12-80832406-3	chr12	80832329	80832529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	41897.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	59.36	34.96	54.76	47.46	52.37	49.54	27.24	57.76	46.62	45.19	36.18	32.27
Merged-chr18-35498901-3	chr18	35498737	35498937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030749)	promoter-TSS (NM_030749)	88.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	77.53	68.67	67.31	51.48	76.09	95.95	46.17	73.57	94.61	96.91	79.89	78.94
Merged-chr6-54941343-3	chr6	54941243	54941443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 4 of 11)	RLTR28|LTR|ERVL	30318.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	43.61	28.93	37.08	49.87	39.68	26.34	14.62	40.4	33.24	26.11	29.65	27.25
Merged-chr16-57559150-1	chr16	57559050	57559250	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9908.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.27	1.01	7.42	14.08	3.68	4.08	10.3	14.13	4.33	2.51	5.02	4.39
Merged-chr15-80445111-1	chr15	80445011	80445211	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6508.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	9.69	2.52	9.13	1.61	5.32	2.51	1.66	2.83	29.31	36.65	29.14	18.48
Merged-chr14-118831666-1	chr14	118831566	118831766	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-23284.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	7.67	14.09	6.28	4.42	6.14	15.99	20.26	14.55	0.0	0.5	0.0	0.0
Merged-chr19-3708244-3	chr19	3708148	3708348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358258)	promoter-TSS (NM_001358258)	-45.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	189.78	159.47	120.37	164.9	190.23	210.09	158.78	132.7	174.86	205.86	221.09	101.19
Merged-chr7-98815333-3	chr7	98815237	98815437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19775.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	47.24	28.42	25.1	28.56	45.41	41.08	22.92	42.0	60.78	47.7	58.79	39.78
Merged-chr7-27330996-3	chr7	27330885	27331085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175641, intron 4 of 32)	CpG	2663.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	16.15	15.85	23.39	16.49	47.87	24.46	19.6	27.7	43.86	50.71	59.29	25.06
Merged-chr5-121197589-3	chr5	121197496	121197696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6199.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	16.96	12.07	21.68	15.28	15.55	16.31	13.29	17.07	18.88	23.1	28.64	14.1
Merged-chr7-101504738-3	chr7	101504634	101504834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001143849, exon 17 of 30)	exon (NM_001143849, exon 17 of 30)	29358.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	35.94	29.43	29.66	21.72	35.18	23.83	13.62	29.86	59.6	49.21	70.35	45.42
Merged-chr4-48473447-3	chr4	48473338	48473538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355741)	promoter-TSS (NM_001355741)	25.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	55.32	49.55	55.33	49.07	60.96	61.46	53.15	53.47	74.74	61.26	85.42	60.77
Merged-chr12-79642907-3	chr12	79642800	79643000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	281833.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	38.76	45.78	81.0	52.29	59.73	53.31	46.84	47.41	44.45	44.69	65.83	30.07
Merged-chr10-13301227-3	chr10	13301119	13301319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	MIR|SINE|MIR	23070.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	68.24	63.39	57.62	48.67	88.78	142.99	81.71	89.05	127.06	120.51	92.46	37.28
Merged-chr7-101549438-2	chr7	101549338	101549538	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	6364.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	8.48	14.09	6.85	6.44	12.27	25.09	5.98	10.71	69.43	61.26	76.38	43.23
Merged-chr2-24935308-3	chr2	24935196	24935396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-15.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	129.62	111.18	123.79	128.3	155.05	179.68	109.62	130.6	165.22	147.62	209.03	105.57
Merged-chr8-122407844-3	chr8	122407763	122407963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029993, intron 10 of 18)	intron (NM_001029993, intron 10 of 18)	-14157.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	48.86	42.26	54.19	74.41	52.37	50.17	78.39	80.02	43.47	32.64	79.39	54.51
Merged-chr5-137533211-3	chr5	137533084	137533284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010312, exon 1 of 10)	5' UTR (NM_010312, exon 1 of 10)	122.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	29.88	25.15	10.84	20.91	27.0	27.59	22.59	18.2	32.26	42.68	27.64	20.36
Merged-chr3-137952416-3	chr3	137952310	137952510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29139.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	134.46	114.95	136.91	119.86	152.6	172.15	147.82	133.37	101.29	137.58	110.55	71.74
Merged-chr4-14826576-3	chr4	14826488	14826688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-1.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	246.72	255.8	233.32	277.52	291.28	301.34	265.4	309.98	298.77	309.8	404.0	157.57
Merged-chr4-45018614-3	chr4	45018558	45018758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285800)	promoter-TSS (NM_001285800)	49.0	NM_001285800	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	54.92	47.04	50.77	38.21	69.55	64.28	49.83	58.54	69.04	58.24	72.36	28.51
Merged-chr6-8509832-3	chr6	8509740	8509940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040452)	promoter-TSS (NR_040452)	240.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	56.94	58.35	54.76	55.5	63.41	86.86	78.06	82.15	109.16	96.91	105.02	38.22
Merged-chr6-124738667-3	chr6	124738563	124738763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	46.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	86.01	71.18	72.45	75.21	101.87	95.01	48.16	66.76	98.15	85.86	126.63	46.68
Merged-chr17-31512253-3	chr17	31512135	31512335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021322, exon 1 of 11)	exon (NM_021322, exon 1 of 11)	252.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	43.21	54.83	37.08	44.64	65.46	72.44	37.54	49.74	46.62	55.23	42.71	31.33
Merged-chr10-80665740-1	chr10	80665640	80665840	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-8669.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	2.83	10.82	1.14	0.8	4.91	19.44	0.66	1.43	7.87	10.54	3.52	0.0
Merged-chr17-74430689-3	chr17	74430595	74430795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 8 of 8)	MLT1J|LTR|ERVL-MaLR	28413.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	16.15	13.83	27.95	16.89	22.91	24.46	27.57	35.19	23.6	22.59	26.13	20.99
Merged-chr16-21628415-1	chr16	21628315	21628515	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	66250.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	1.62	0.25	6.85	1.61	4.09	2.51	14.28	12.17	0.98	3.51	4.52	0.31
Merged-chr17-24549919-3	chr17	24549809	24550009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-41.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	216.03	202.98	184.83	173.75	251.19	302.28	154.79	192.7	238.78	266.12	261.29	137.84
Merged-chr2-75777331-3	chr2	75777205	75777405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54872.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	39.17	43.77	51.91	40.22	61.77	62.71	40.52	58.91	55.86	66.28	65.83	59.52
Merged-chr18-24530240-3	chr18	24530129	24530329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144861)	promoter-TSS (NM_144861)	-25.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	125.58	115.7	128.35	115.03	166.51	169.64	113.6	181.74	182.13	147.62	228.63	105.26
Merged-chrX-155584798-3	chrX	155584703	155584903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093750, intron 2 of 2)	intron (NM_001093750, intron 2 of 2)	38524.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	40.78	44.27	46.78	51.48	51.55	60.52	49.49	67.23	65.89	47.7	82.41	31.33
Merged-chr1-155146841-3	chr1	155146741	155146941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-27.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	42.4	29.43	29.66	29.76	30.27	34.18	20.93	26.61	43.07	46.19	44.22	34.15
Merged-chr11-44496298-1	chr11	44496198	44496398	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22666.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.81	3.02	0.0	2.41	2.45	3.14	3.32	2.47	19.08	17.57	25.63	7.21
Merged-chr8-95853486-3	chr8	95853381	95853581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172758)	promoter-TSS (NM_172758)	10.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	33.11	41.25	39.93	32.98	44.18	48.92	39.53	47.78	46.81	28.12	34.67	23.18
Merged-chr6-108165113-3	chr6	108164992	108165192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20491.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	42.8	41.25	71.88	52.69	37.23	27.59	40.86	46.57	78.68	76.32	100.5	36.65
Merged-chr3-105892042-3	chr3	105891932	105892132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-12389.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	22.21	17.1	25.67	22.52	24.14	18.19	13.95	16.21	19.47	18.58	25.12	15.98
Merged-chr1-87854682-1	chr1	87854582	87854782	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_136921)	promoter-TSS (NR_136921)	-383.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	2.02	2.01	2.28	3.22	0.0	2.2	3.32	3.59	2.75	2.51	1.51	1.88
Merged-chr19-5964227-3	chr19	5964125	5964325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-19.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	46.84	26.91	22.82	25.74	38.46	41.39	18.6	25.32	59.01	72.81	43.72	30.7
Merged-chr2-122611276-3	chr2	122611140	122611340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	37.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	72.28	82.25	39.93	91.7	74.87	87.17	61.78	82.07	71.4	74.81	103.01	57.95
Merged-chr2-155692290-3	chr2	155692149	155692349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163452, exon 1 of 19)	exon (NM_001163452, exon 1 of 19)	135.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	32.71	45.02	44.5	55.91	45.41	50.49	62.45	29.24	44.65	47.2	45.22	39.47
Merged-chr9-40319029-2	chr9	40318924	40319124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2299.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	17.77	5.53	7.99	18.9	4.09	1.57	11.29	13.65	1.18	0.5	4.52	0.94
Merged-chr5-113835200-3	chr5	113835105	113835305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4704.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	45.23	42.76	45.64	30.57	45.0	49.54	31.56	49.51	45.83	44.19	47.23	31.64
Merged-chr14-79532536-3	chr14	79532455	79532655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	16881.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	29.88	32.2	39.36	31.77	42.96	43.27	24.91	45.81	46.42	38.16	51.76	34.46
Merged-chr6-99490063-3	chr6	99489950	99490150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	30943.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	52.9	45.28	54.19	61.94	81.41	74.63	65.11	85.88	72.18	62.26	87.93	56.7
Merged-chr4-53150714-3	chr4	53150645	53150845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9150.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	25.84	39.49	48.49	70.79	72.41	74.94	80.05	85.09	98.54	73.81	131.15	65.47
Merged-chr11-46287001-3	chr11	46286919	46287119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 3 of 30)	intron (NM_001252459, intron 3 of 30)	25339.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	50.47	46.28	80.43	58.72	49.91	35.12	52.48	78.73	41.89	53.22	59.29	29.76
Merged-chr8-125054682-3	chr8	125054555	125054755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	CpG	460.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	18.17	18.11	45.07	27.75	35.59	54.25	21.92	39.34	76.12	43.68	103.51	34.77
Merged-chr2-154372696-3	chr2	154372614	154372814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	5.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	34.73	33.2	37.08	30.57	34.36	45.78	23.58	30.76	49.37	50.21	36.18	32.89
Merged-chr8-11458386-3	chr8	11458336	11458536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	MIR|SINE|MIR	-19493.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	172.42	164.75	145.47	95.72	176.73	231.1	167.41	128.02	229.73	229.96	246.22	94.29
Merged-chr15-78935037-3	chr15	78934933	78935133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133800)	promoter-TSS (NM_133800)	100.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	25.84	21.88	25.1	32.58	33.55	43.27	26.91	20.05	15.74	26.11	15.07	19.42
Merged-chr1-118459112-3	chr1	118459017	118459217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	148.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	36.75	37.73	27.38	44.24	52.77	72.75	37.87	60.36	59.01	77.83	67.33	33.83
Merged-chr17-57285170-3	chr17	57285061	57285261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	6061.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	66.22	76.97	71.31	68.78	57.27	99.4	47.17	60.87	93.82	112.97	80.9	60.77
Merged-chr15-103272735-3	chr15	103272620	103272820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357748)	promoter-TSS (NM_001357748)	-168.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	225.72	253.29	217.34	271.08	228.69	270.93	179.7	212.19	278.12	279.67	314.55	161.96
Merged-chr6-85306706-1	chr6	85306606	85306806	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178639, intron 2 of 13)	MTD|LTR|ERVL-MaLR	26716.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	3.23	6.29	8.56	6.84	5.73	12.54	4.65	13.32	6.1	5.02	7.03	5.01
Merged-chr11-3202475-3	chr11	3202365	3202565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166547)	promoter-TSS (NM_001166547)	112.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	47.24	73.7	62.18	76.02	48.27	65.54	93.34	53.3	69.04	100.92	75.37	37.59
Merged-chr10-13965711-3	chr10	13965658	13965858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-317.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	83.59	92.81	77.58	88.48	82.23	114.77	104.63	115.88	155.58	132.05	172.35	101.5
Merged-chr7-24608291-3	chr7	24608195	24608395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3033.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	40.78	41.0	53.62	60.73	51.14	65.22	31.22	58.74	83.79	63.77	124.11	43.86
Merged-chr9-82829965-3	chr9	82829873	82830073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	167.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	68.65	63.64	52.48	36.6	76.91	125.74	52.82	67.51	92.64	99.42	105.52	72.36
Merged-chr19-14586253-3	chr19	14586167	14586367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	10946.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	97.31	94.32	136.34	117.04	107.59	113.83	92.34	152.92	102.08	88.87	147.23	52.63
Merged-chr16-90043075-3	chr16	90042958	90043158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68359.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	47.65	49.05	26.81	63.55	77.32	56.76	41.85	74.36	70.61	59.25	69.85	48.87
Merged-chr2-131210401-3	chr2	131210279	131210479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291032)	promoter-TSS (NM_001291032)	19.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	127.6	110.67	124.36	110.2	99.41	172.78	128.22	111.53	162.66	192.81	186.42	136.58
Merged-chr7-100950683-3	chr7	100950589	100950789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	L2|LINE|L2	13677.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	157.08	104.89	147.75	162.09	100.64	108.18	118.59	119.86	66.28	82.35	130.65	64.22
Merged-chr3-68709478-3	chr3	68709348	68709548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18024.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	31.9	29.18	19.4	39.42	36.0	53.93	47.83	40.23	40.12	50.71	53.77	24.12
Merged-chr10-75517391-3	chr10	75517308	75517508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175133)	promoter-TSS (NM_175133)	-27.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	201.9	191.66	182.55	207.13	236.46	213.54	172.4	213.59	308.8	270.13	334.15	156.63
Merged-chr11-103027015-3	chr11	103026917	103027117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1526.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	58.15	75.46	83.29	93.31	72.82	95.64	81.05	72.65	116.44	96.91	107.03	92.73
Merged-chr15-99875532-3	chr15	99875424	99875624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-68.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	59.76	58.35	76.44	61.54	78.96	81.84	30.23	50.75	69.23	71.8	90.45	46.05
Merged-chr9-108517299-5	chr9	108517161	108517361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175143, intron 1 of 9)	CpG	174.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	36.34	48.8	47.35	41.02	39.27	55.19	32.88	30.28	31.47	44.19	56.28	36.03
Merged-chr2-49744464-3	chr2	49744403	49744603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 20 of 25)	intron (NM_008449, intron 20 of 25)	-43183.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	62.59	68.42	80.43	84.86	64.64	60.21	77.73	102.17	104.64	88.37	137.18	73.93
Merged-chr1-134788387-1	chr1	134788287	134788487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	15334.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	29.48	21.38	15.4	4.83	0.0	2.2	2.66	0.31	9.05	0.5	0.5	1.57
Merged-chr9-106372025-3	chr9	106371930	106372130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	3398.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	69.05	54.58	73.02	75.21	63.82	72.12	51.82	77.47	115.06	117.49	138.18	63.28
Merged-chr10-39435015-4	chr10	39434940	39435140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65241.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	14.54	14.09	20.54	15.28	13.09	14.11	45.51	26.61	20.85	31.63	23.62	29.13
Merged-chr11-87423025-3	chr11	87422915	87423115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4576.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	67.43	65.4	61.61	85.67	69.55	106.3	66.43	33.45	74.35	83.85	88.44	50.75
Merged-chr11-8630038-3	chr11	8629943	8630143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	34492.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	38.76	29.93	57.62	31.77	33.96	30.1	35.21	43.91	47.99	28.12	47.23	31.64
Merged-chr4-150061041-3	chr4	150060935	150061135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7419.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	32.3	44.52	85.57	62.34	108.41	104.42	150.14	181.65	41.3	24.6	42.21	20.36
Merged-chr16-90283022-3	chr16	90282876	90283076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	1510.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	22.61	23.39	35.37	30.97	38.86	41.71	23.92	40.99	38.94	41.67	51.76	37.28
Merged-chr9-21528087-3	chr9	21527971	21528171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198794, intron 1 of 6)	L2b|LINE|L2	1894.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	128.81	105.39	152.31	115.03	190.64	191.28	128.22	182.44	141.22	140.59	186.42	90.53
Merged-chr1-180888866-3	chr1	180888783	180888983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4225.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	84.8	79.73	73.59	49.47	73.64	99.4	55.47	55.4	102.08	101.43	94.47	51.38
Merged-chr9-44344005-3	chr9	44343889	44344089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013551, intron 1 of 13)	CpG	239.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	83.59	94.32	81.0	102.56	80.59	101.28	82.05	69.53	91.46	127.03	91.45	78.32
Merged-chr3-58415302-3	chr3	58415187	58415387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081229, exon 1 of 4)	5' UTR (NM_001081229, exon 1 of 4)	567.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	44.82	49.8	73.59	63.15	47.87	51.11	71.08	78.14	75.92	68.29	97.98	47.62
Merged-chr10-127668907-3	chr10	127668834	127669034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045171)	TTS (NR_045171)	1811.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	24.23	20.37	17.68	2.01	13.91	28.54	6.31	3.79	30.49	24.6	36.68	10.96
Merged-chr11-104001172-3	chr11	104001095	104001295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34324.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	81.97	103.13	82.15	69.18	84.28	131.39	82.05	78.81	120.96	96.91	129.14	57.64
Merged-chr16-30390067-5	chr16	30389945	30390145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1515.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	44.82	42.26	37.65	42.63	38.46	53.93	57.47	37.21	44.25	54.23	71.35	39.78
Merged-chr8-111821318-3	chr8	111821229	111821429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011801, intron 5 of 6)	intron (NM_011801, intron 5 of 6)	32981.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	61.38	56.34	99.83	49.87	45.41	88.11	50.16	50.5	82.81	90.88	79.39	62.03
Merged-chr13-96548092-3	chr13	96547986	96548186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023420, intron 1 of 17)	intron (NM_023420, intron 1 of 17)	5351.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	58.95	50.05	40.5	62.34	79.37	61.15	53.48	71.55	62.15	52.72	47.74	43.23
Merged-chr4-88722406-4	chr4	88722288	88722488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172871, exon 1 of 1)	5' UTR (NM_172871, exon 1 of 1)	120.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	87.62	67.16	55.33	104.57	93.28	103.79	105.96	93.45	94.21	104.44	115.57	84.27
Merged-chr16-4541958-3	chr16	4541855	4542055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	17765.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	205.13	200.22	224.76	226.84	245.87	270.61	181.03	214.29	255.5	248.04	260.79	136.58
Merged-chr3-86774719-3	chr3	86774575	86774775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077688, intron 54 of 54)	Tigger6a|DNA|TcMar-Tigger	146209.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	23.42	32.7	33.09	24.13	36.41	39.51	26.24	30.56	25.77	24.1	36.68	17.54
Merged-chr11-70945484-3	chr11	70945391	70945591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083331, intron 10 of 16)	intron (NM_001083331, intron 10 of 16)	24482.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	33.11	19.87	57.62	30.16	19.64	22.58	20.93	31.6	20.06	25.61	33.67	18.8
Merged-chr19-46483150-3	chr19	46483071	46483271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-18477.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	43.21	21.38	46.78	47.86	39.27	36.06	29.9	41.33	50.16	31.63	52.26	21.3
Merged-chr16-31275250-3	chr16	31275159	31275359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025800)	promoter-TSS (NM_025800)	18.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	108.22	89.54	78.15	76.42	89.18	98.78	61.78	74.66	106.21	92.39	111.05	56.7
Merged-chr8-126945906-3	chr8	126945801	126946001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	20.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	75.51	106.65	70.17	84.46	96.14	101.28	84.37	62.66	123.32	123.02	128.13	92.1
Merged-chr6-146617162-1	chr6	146617062	146617262	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 6 of 11)	L1MC4|LINE|L1	17430.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	9.69	14.59	16.54	7.24	25.77	20.07	14.95	26.27	0.2	2.01	0.5	0.94
Merged-chr10-44602300-3	chr10	44602222	44602422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143574.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	23.02	14.09	29.66	45.85	42.96	42.65	37.2	54.11	45.63	41.67	41.71	27.88
Merged-chr5-64810086-3	chr5	64809974	64810174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6551.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	26.25	28.67	33.09	21.72	49.5	48.92	15.28	36.45	35.4	46.19	53.26	34.46
Merged-chr13-52615247-3	chr13	52615169	52615369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	18387.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	89.24	73.7	94.7	105.78	126.0	130.13	115.93	137.1	106.8	110.46	109.04	80.82
Merged-chr13-59875866-3	chr13	59875768	59875968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52721.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	214.01	213.3	255.56	299.64	173.46	201.94	182.69	200.92	235.83	296.24	324.6	179.82
Merged-chr11-59221743-3	chr11	59221573	59221773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	6489.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	13.33	14.34	27.38	18.5	20.05	11.6	8.3	14.94	13.96	15.06	15.58	11.28
Merged-chr12-86824275-3	chr12	86824116	86824316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60598.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	35.94	35.72	34.8	41.43	51.96	50.17	40.52	49.15	44.45	61.26	51.76	40.72
Merged-chr16-56075435-3	chr16	56075322	56075522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	18.0	NM_001003973	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	34.73	27.92	35.94	30.57	48.27	33.87	24.25	36.11	50.75	46.19	64.32	43.54
Merged-chr15-99030121-4	chr15	99029983	99030183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009448, exon 1 of 4)	5' UTR (NM_009448, exon 1 of 4)	192.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	71.88	57.1	45.64	53.09	47.46	69.3	43.51	38.72	81.82	107.45	104.01	83.02
Merged-chr9-75434695-3	chr9	75434589	75434789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6835.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	126.79	87.28	105.53	89.29	103.91	166.19	68.43	119.92	135.12	109.96	140.7	67.04
Merged-chr3-51340768-3	chr3	51340670	51340870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-126.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	77.12	71.18	74.16	78.83	72.0	81.53	71.42	106.4	97.16	101.43	169.34	76.44
Merged-chr10-123196437-3	chr10	123196305	123196505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301628, intron 1 of 20)	CpG	614.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	37.96	30.69	39.93	49.47	25.77	30.42	32.22	40.68	29.7	38.66	37.69	19.42
Merged-chr10-80578602-3	chr10	80578515	80578715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1319.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	27.46	15.59	27.38	16.49	31.09	25.09	20.26	20.72	44.65	34.65	41.2	26.0
Merged-chr3-89796520-3	chr3	89796397	89796597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	22888.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	94.49	75.96	94.13	96.53	100.64	104.42	86.7	105.48	69.23	97.91	144.21	62.97
Merged-chr9-109057676-3	chr9	109057577	109057777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011637)	TTS (NM_011637)	1574.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	41.19	39.99	49.06	49.47	55.64	57.07	25.91	45.08	58.22	57.74	78.39	42.29
Merged-chr10-30655828-3	chr10	30655732	30655932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	35.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	62.99	68.16	73.59	72.8	71.59	61.77	79.72	90.34	84.38	59.25	142.71	72.99
Merged-chr13-113418320-3	chr13	113418217	113418417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84527.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	94.89	108.41	86.71	57.92	115.37	157.41	67.43	81.5	144.17	143.6	142.71	73.62
Merged-chr7-73572758-3	chr7	73572661	73572861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14366.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	37.15	23.39	25.67	25.34	28.23	24.77	23.58	29.33	34.62	29.62	33.16	37.28
Merged-chr17-6747062-3	chr17	6746978	6747178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	35702.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	105.79	105.89	99.26	104.17	149.73	189.4	133.86	133.35	168.17	154.15	153.26	121.55
Merged-chr6-125360225-3	chr6	125360100	125360300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 5 of 9)	ID_B1|SINE|B4	10477.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	20.19	12.58	17.11	23.33	22.91	15.37	21.26	31.77	95.59	110.46	114.06	60.15
Merged-chr1-89742589-3	chr1	89742505	89742705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 10 of 16)	ORR1E|LTR|ERVL-MaLR	-58713.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	14.94	20.37	27.38	23.33	22.09	31.98	13.95	22.6	32.85	25.11	40.2	28.19
Merged-chr6-135228518-3	chr6	135228415	135228615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028982, exon 10 of 13)	exon (NM_028982, exon 10 of 13)	19369.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	50.47	45.28	58.19	87.28	39.68	54.88	52.15	76.74	65.89	69.29	100.5	62.97
Merged-chrX-113185444-3	chrX	113185322	113185522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018818)	promoter-TSS (NM_018818)	93.0	NM_018818	12662.0	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	29.88	21.63	33.09	27.35	19.64	23.52	17.27	22.65	21.24	15.57	27.64	10.02
Merged-chr16-18089237-3	chr16	18089204	18089404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011172)	promoter-TSS (NM_011172)	-114.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	39.98	34.46	55.9	34.59	51.55	29.79	22.26	44.66	48.98	48.2	48.24	15.66
Merged-chr18-40308212-3	chr18	40308096	40308296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	49835.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	79.95	62.63	46.78	37.0	119.05	67.42	75.4	73.21	45.24	44.69	42.21	70.17
Merged-chr19-16122546-3	chr19	16122464	16122664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-10267.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	79.55	73.7	62.18	70.79	42.96	60.83	31.89	35.75	101.49	88.37	98.99	57.33
Merged-chr8-107096546-3	chr8	107096465	107096665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286200)	promoter-TSS (NM_001286200)	-20.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	83.59	91.05	65.6	87.68	77.73	112.89	58.46	92.1	125.68	122.01	148.73	71.74
Merged-chr15-96638325-3	chr15	96638229	96638429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	3633.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	99.33	101.62	101.54	85.67	163.23	290.37	180.7	192.65	292.28	265.11	296.97	169.48
Merged-chr8-106929673-2	chr8	106929569	106929769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6081.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	14.54	13.83	25.1	25.34	15.55	14.74	26.57	17.19	3.93	3.51	3.01	3.13
Merged-chr6-42344407-3	chr6	42344349	42344549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5379.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	21.0	20.12	38.79	47.06	39.68	26.34	44.51	44.66	33.83	22.09	33.67	12.84
Merged-chr5-148928779-3	chr5	148928681	148928881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-134.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	59.36	43.51	70.74	77.62	55.64	63.66	67.1	65.94	77.89	102.93	147.23	66.41
Merged-chr15-36608515-3	chr15	36608434	36608634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008774, exon 1 of 15)	5' UTR (NM_008774, exon 1 of 15)	439.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	10.9	12.83	8.56	18.1	9.82	19.76	27.57	15.9	23.21	38.16	28.14	22.56
Merged-chr15-103333906-3	chr15	103333798	103333998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	440.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	38.76	21.63	23.39	36.6	33.14	42.96	13.62	35.97	27.73	30.13	42.71	25.06
Merged-chr17-43569507-3	chr17	43569391	43569591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1040.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	31.09	29.18	61.61	24.53	40.5	63.03	50.49	51.08	45.83	35.65	39.19	14.72
Merged-chr2-117996336-3	chr2	117996236	117996436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114866.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	33.92	15.85	34.23	36.2	33.55	42.02	34.55	28.49	40.91	38.16	32.16	26.31
Merged-chr11-17159212-3	chr11	17159110	17159310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-88.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	150.62	157.96	178.55	191.04	181.64	198.49	189.67	222.87	248.42	210.88	289.43	124.99
Merged-chr5-115516811-3	chr5	115516710	115516910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10134.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	110.64	59.61	143.76	112.62	92.05	104.73	93.34	100.91	90.08	86.86	128.64	57.01
Merged-chr2-39005138-3	chr2	39005044	39005244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	-13.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	71.47	54.58	90.7	70.79	122.73	95.64	72.41	86.02	135.52	95.9	156.27	72.05
Merged-chr3-97227728-3	chr3	97227612	97227812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029933)	promoter-TSS (NM_029933)	-348.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	96.91	80.99	92.41	86.07	106.37	98.46	81.05	105.25	114.08	144.1	154.26	91.79
Merged-chr14-121995010-3	chr14	121994916	121995116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-29823.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	89.64	76.97	103.82	89.29	105.14	106.93	134.53	125.36	136.89	124.02	167.83	87.4
Merged-chr2-26974159-3	chr2	26974060	26974260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	744.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	144.96	115.95	107.82	95.32	103.5	171.84	86.36	112.15	184.69	144.1	180.39	112.46
Merged-chrX-8192925-3	chrX	8192827	8193027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023638)	TTS (NM_023638)	585.0	NM_007898	13595.0	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	31.9	35.47	66.74	62.74	62.18	58.95	55.47	72.0	63.92	55.23	85.92	39.47
Merged-chr6-34945721-1	chr6	34945621	34945821	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001025573, exon 8 of 8)	3' UTR (NM_001025573, exon 8 of 8)	24773.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	3.23	1.26	6.85	5.63	4.5	5.96	8.3	12.11	3.34	6.53	3.01	3.76
Merged-chr13-49242912-3	chr13	49242798	49242998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5396.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	34.32	41.25	43.93	40.22	50.32	69.93	30.56	42.17	44.06	33.14	31.15	19.11
Merged-chr11-73199310-4	chr11	73199257	73199457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-125.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	94.49	64.14	73.02	46.66	90.0	99.4	61.45	76.35	113.29	104.94	110.04	61.4
Merged-chr2-117299124-3	chr2	117299031	117299231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	43746.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	47.24	44.27	45.07	55.91	56.05	75.57	37.87	34.63	75.92	83.85	76.38	37.59
Merged-chr17-56079134-3	chr17	56079018	56079218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	215.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	270.54	281.21	262.98	266.26	320.74	402.31	316.23	298.29	350.89	393.65	486.4	225.55
Merged-chr10-80141445-3	chr10	80141331	80141531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	-844.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	126.79	85.02	126.07	96.13	117.41	136.72	77.06	112.79	135.52	103.43	159.79	99.31
Merged-chr17-87379082-3	chr17	87378979	87379179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	48662.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	41.19	26.66	50.77	57.51	64.23	47.66	44.18	74.13	41.7	26.11	71.86	37.59
Merged-chr11-96967037-3	chr11	96966953	96967153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	10635.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	32.3	21.63	22.82	24.13	42.96	64.6	28.9	39.0	50.35	56.74	56.78	22.87
Merged-chr9-50553795-3	chr9	50553694	50553894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357222)	promoter-TSS (NM_001357222)	-132.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	31.5	26.41	28.52	30.16	36.0	25.71	14.62	25.51	25.57	17.07	32.16	16.92
Merged-chr14-55604430-1	chr14	55604330	55604530	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	-149.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	21.4	18.36	18.25	19.31	23.73	18.81	8.3	24.48	27.54	35.15	33.67	16.92
Merged-chr8-18936894-3	chr8	18936792	18936992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	13979.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	43.61	28.17	15.97	35.39	46.23	28.22	20.93	25.68	47.01	59.25	58.29	32.58
Merged-chr2-45270233-3	chr2	45270136	45270336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-152794.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	33.11	17.36	30.8	24.13	40.09	40.45	38.86	61.71	52.32	45.19	76.88	37.59
Merged-chr8-106893664-3	chr8	106893592	106893792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	52.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	27.05	33.45	26.81	28.96	44.18	45.78	26.91	30.11	41.7	52.22	55.78	26.31
Merged-chr3-105055137-3	chr3	105055028	105055228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1982.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	12.92	6.29	18.83	28.56	22.09	14.74	33.88	32.41	24.19	22.09	34.67	22.87
Merged-chr19-60946168-3	chr19	60946064	60946264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	56415.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	88.84	65.9	99.83	99.34	115.37	79.96	106.96	121.68	98.15	88.37	111.55	55.13
Merged-chr13-94167523-1	chr13	94167423	94167623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	109727.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	16.15	11.82	21.11	31.37	0.0	2.51	0.0	2.3	1.77	0.0	0.0	4.39
Merged-chr2-132263104-3	chr2	132262987	132263187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-61.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	147.39	165.76	164.86	197.48	177.96	208.53	145.82	169.46	206.52	234.99	255.76	138.15
Merged-chr11-102185292-3	chr11	102185167	102185367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172947)	promoter-TSS (NM_172947)	-11.0	NM_172947	268490.0	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	39.17	39.49	53.62	45.85	36.41	61.77	27.9	32.72	62.55	81.34	72.86	48.24
Merged-chr10-40500084-3	chr10	40499992	40500192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70270.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	40.78	37.23	38.22	35.8	51.14	33.55	51.82	77.41	29.9	30.13	41.2	17.54
Merged-chr10-118981611-3	chr10	118981494	118981694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54451.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	69.86	71.94	63.32	72.8	76.5	93.44	57.8	74.33	125.29	130.55	144.71	58.27
Merged-chr18-6490060-3	chr18	6489962	6490162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035446)	TTS (NR_035446)	584.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	78.74	57.35	86.71	74.81	104.32	99.4	51.15	106.43	105.62	117.99	143.21	80.2
Merged-chr6-138141423-3	chr6	138141314	138141514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361309)	promoter-TSS (NM_001361309)	-173.0	NM_001347489	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	25.44	21.88	50.2	35.8	47.87	32.61	53.15	52.35	34.62	24.6	38.19	27.25
Merged-chr9-78109102-3	chr9	78108982	78109182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	-17.0	NM_001081490	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	85.6	85.77	90.13	110.2	124.37	108.81	68.43	111.25	124.5	117.99	160.29	86.15
Merged-chr8-128595113-3	chr8	128595011	128595211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90543.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	46.03	28.67	47.92	53.49	55.64	33.55	35.54	59.97	47.8	22.59	64.82	35.4
Merged-chr15-27725212-3	chr15	27725113	27725313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43671.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	26.65	22.89	47.35	34.59	46.64	34.18	35.21	48.9	50.35	45.69	58.29	31.64
Merged-chrUn_JH584304-43301-1	chrUn_JH584304	43201	43401	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	16388.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	184.89	164.19	232.65	98.05
Merged-chr6-71632991-3	chr6	71632867	71633067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-50.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	126.79	154.69	126.07	107.39	162.0	169.64	133.2	161.72	191.38	203.35	226.62	125.62
Merged-chr1-37474260-3	chr1	37474148	37474348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	14357.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	16.15	13.83	17.11	14.88	25.77	32.3	26.91	29.5	37.96	25.61	38.69	26.94
Merged-chr4-139192673-3	chr4	139192500	139192700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009798)	promoter-TSS (NM_009798)	-299.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	165.96	160.73	204.22	190.24	178.37	179.05	152.13	172.94	208.69	203.35	329.13	143.79
Merged-chr16-15886808-1	chr16	15886708	15886908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-478.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	14.54	24.65	29.09	20.51	15.96	21.01	12.95	18.06	11.6	12.55	22.61	14.72
Merged-chr6-125165173-1	chr6	125165073	125165273	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289726, intron 2 of 6)	CpG	600.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	20.59	33.96	22.82	25.34	25.36	33.87	28.57	14.72	46.22	35.65	35.68	35.09
Merged-chr11-116335424-3	chr11	116335329	116335529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008240)	promoter-TSS (NM_008240)	-75.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	48.05	33.96	29.66	26.95	58.09	39.82	15.28	22.85	64.71	60.75	57.28	27.25
Merged-chr6-54736292-3	chr6	54736178	54736378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	54654.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	60.17	52.07	55.9	74.41	36.82	49.86	39.2	63.95	54.29	50.71	64.82	38.53
Merged-chr4-133754286-5	chr4	133754172	133754372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-661.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	59.36	62.63	61.61	55.1	71.18	85.29	44.51	49.43	78.48	77.83	49.24	42.92
Merged-chr11-87755547-3	chr11	87755457	87755657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1307.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	125.98	119.48	123.79	106.18	110.46	151.46	74.74	74.33	181.15	175.74	184.91	103.69
Merged-chr2-139919964-3	chr2	139919857	139920057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110352, intron 9 of 12)	intron (NR_110352, intron 9 of 12)	146848.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	54.92	47.04	58.19	31.37	63.0	95.33	63.44	57.11	103.06	123.52	91.45	46.05
Merged-chr7-134697700-3	chr7	134697582	134697782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	26995.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	60.17	44.77	61.04	51.08	58.5	50.8	68.76	64.74	51.73	29.62	50.25	23.49
Merged-chr13-23424671-3	chr13	23424573	23424773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-807.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	47.65	56.59	78.15	54.3	54.41	70.24	37.2	60.39	79.66	62.26	109.04	36.03
Merged-chr14-52314671-3	chr14	52314572	52314772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1651.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	25.04	12.83	19.97	23.33	21.68	26.97	17.94	30.31	33.63	21.09	29.14	13.16
Merged-chr5-149031386-3	chr5	149031280	149031480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	20236.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	61.38	76.21	65.6	58.72	71.18	40.76	54.14	64.71	54.09	58.24	92.96	26.0
Merged-chr11-119603007-3	chr11	119602922	119603122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001306081, exon 1 of 33)	5' UTR (NM_001306081, exon 1 of 33)	117.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	39.17	27.17	26.81	23.33	32.32	31.67	26.91	25.71	39.93	32.64	39.19	24.75
Merged-chr1-157017685-3	chr1	157017578	157017778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78052.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	31.5	21.88	52.48	22.93	21.68	35.12	12.95	37.91	21.44	17.57	22.61	15.35
Merged-chr15-88490450-3	chr15	88490345	88490545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109857.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	86.01	50.05	88.99	90.09	75.28	63.66	43.51	74.24	76.71	78.83	88.94	46.36
Merged-chr6-142504276-1	chr6	142504176	142504376	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008492, intron 2 of 7)	intron (NM_008492, intron 2 of 7)	3681.0	NM_008492	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	4.44	1.26	3.99	3.62	2.05	3.14	10.63	6.95	2.56	4.02	3.01	2.19
Merged-chr6-134262208-3	chr6	134262109	134262309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 7 of 8)	intron (NM_001303102, intron 7 of 8)	-134120.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	135.27	158.21	132.35	135.14	129.69	204.14	117.92	98.64	146.34	179.25	166.82	85.84
Merged-chr12-31654900-3	chr12	31654789	31654989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028002)	promoter-TSS (NM_028002)	20.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	52.09	47.04	34.8	42.23	52.37	63.34	42.85	55.88	56.25	69.79	80.9	43.54
Merged-chrX-9471063-3	chrX	9470940	9471140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-1716.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	76.32	62.88	65.6	46.66	54.82	97.21	58.13	37.82	77.5	84.86	110.55	24.75
Merged-chr19-30030437-3	chr19	30030329	30030529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-84.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	185.34	140.6	138.05	177.77	148.5	201.31	147.82	156.48	202.59	228.96	224.61	120.29
Merged-chr9-97111194-3	chr9	97111098	97111298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138756)	promoter-TSS (NM_138756)	-157.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	149.4	142.36	142.04	122.27	117.82	181.25	108.62	149.8	204.56	177.24	172.85	123.74
Merged-chr7-45568305-3	chr7	45568194	45568394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025330)	TTS (NM_025330)	-1859.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	91.26	71.18	82.72	67.57	94.09	108.18	59.46	107.5	142.99	110.97	106.53	79.57
Merged-chr5-25760040-3	chr5	25759957	25760157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310504)	promoter-TSS (NM_001310504)	84.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	24.23	25.66	34.23	32.98	25.77	48.29	53.15	32.5	31.08	46.7	42.21	30.39
Merged-chr7-4150973-3	chr7	4150882	4151082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021454)	TTS (NM_021454)	-1110.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	26.65	17.86	21.11	27.35	27.82	20.07	15.61	15.28	22.62	20.08	37.18	19.11
Merged-chr2-29619612-3	chr2	29619488	29619688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-132.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	54.51	44.27	58.19	26.55	37.23	68.67	21.92	31.51	58.81	58.24	60.3	31.64
Merged-chr14-64330622-3	chr14	64330525	64330725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 1 of 4)	L1MD|LINE|L1	86331.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	51.69	38.74	46.21	49.07	78.96	75.57	51.49	80.19	83.0	30.13	84.42	35.4
Merged-chr3-116425106-3	chr3	116425012	116425212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamSINE1|SINE|tRNA	-1080.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	41.19	43.77	39.93	54.3	29.46	59.27	31.22	52.71	46.62	63.27	38.19	32.27
Merged-chr18-77774048-3	chr18	77773939	77774139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357532)	promoter-TSS (NM_001357532)	-154.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	58.95	50.81	41.07	65.96	52.77	60.52	65.11	46.65	54.09	53.73	74.37	54.51
Merged-chr6-48086642-3	chr6	48086533	48086733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347142)	promoter-TSS (NM_001347142)	-40.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	67.03	75.46	99.83	69.18	106.37	83.72	71.08	91.65	92.84	102.43	122.1	72.99
Merged-chr19-29064683-3	chr19	29064568	29064768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2633.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	27.86	23.39	15.97	33.78	24.96	23.2	35.21	30.95	21.44	20.08	30.15	15.04
Merged-chr10-80963400-1	chr10	80963300	80963500	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33309.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.44	3.52	4.56	6.44	4.91	3.45	11.29	12.0	10.42	3.51	2.01	3.13
Merged-chr4-151861965-3	chr4	151861843	151862043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-175.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	256.41	290.77	279.52	345.89	319.1	359.67	311.24	324.23	426.03	479.51	517.56	281.94
Merged-chr8-83166117-3	chr8	83165995	83166195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027758, exon 1 of 18)	exon (NM_027758, exon 1 of 18)	743.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	31.09	27.17	37.65	34.59	25.77	41.39	28.23	34.68	35.8	36.65	38.19	32.27
Merged-chr15-102393710-3	chr15	102393608	102393808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12608.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	75.91	71.94	92.98	100.15	80.18	93.13	63.44	82.77	98.54	86.86	98.99	45.42
Merged-chr8-54530084-3	chr8	54529991	54530191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-93.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	225.72	226.38	248.72	311.3	320.33	365.94	274.71	385.6	369.97	336.91	473.84	226.81
Merged-chr8-126666621-3	chr8	126666507	126666707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73171.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	51.69	34.46	45.07	47.86	46.23	45.47	40.19	52.43	40.91	50.21	62.81	37.91
Merged-chr19-9931677-1	chr19	9931577	9931777	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32144.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	23.02	17.61	15.97	8.45	38.86	39.82	26.57	29.05	46.62	51.21	41.71	25.06
Merged-chr8-47688701-3	chr8	47688613	47688813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13554.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	24.23	24.9	18.83	30.97	46.23	42.02	47.17	63.62	31.47	14.06	30.15	14.72
Merged-chr6-33401398-3	chr6	33401297	33401497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347089, intron 7 of 9)	Lx8b|LINE|L1	152269.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	29.48	30.43	38.79	33.78	42.96	49.23	31.22	52.4	37.57	37.66	39.19	27.57
Merged-chr16-33251583-4	chr16	33251513	33251713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080557, intron 1 of 13)	CpG	157.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	20.19	39.24	23.39	26.95	29.05	54.88	40.19	24.34	26.75	38.16	22.61	19.42
Merged-chr10-60350927-3	chr10	60350840	60351040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4089.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	33.52	30.94	43.93	59.93	42.55	29.79	13.29	27.06	47.4	43.68	60.8	23.49
Merged-chr17-66101586-3	chr17	66101460	66101660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278415)	promoter-TSS (NM_001278415)	-1.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	140.52	121.49	150.6	160.48	171.41	198.49	141.5	191.58	183.71	179.75	289.93	112.46
Merged-chr14-70994549-3	chr14	70994425	70994625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104418.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	27.86	19.62	21.68	21.32	30.27	40.45	39.53	27.42	18.49	25.11	28.14	13.16
Merged-chr7-80079032-3	chr7	80078921	80079121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-3764.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	93.28	106.9	140.33	118.25	148.1	146.44	98.99	118.01	135.91	141.59	153.26	78.0
Merged-chr8-40862500-1	chr8	40862400	40862600	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001044740, exon 1 of 12)	5' UTR (NM_001044740, exon 1 of 12)	133.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	1.21	2.26	2.28	5.23	2.86	5.02	2.66	0.9	19.28	17.07	17.59	12.53
Merged-chr10-66940524-3	chr10	66940407	66940607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20123.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	19.79	30.69	40.5	34.59	40.91	48.92	41.52	33.95	34.22	44.69	38.19	23.18
Merged-chr17-45573911-3	chr17	45573818	45574018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-657.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	62.18	42.51	42.21	36.2	38.05	46.72	18.6	39.7	83.0	66.28	71.35	48.87
Merged-chr4-149793881-1	chr4	149793781	149793981	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19614.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.62	1.26	2.28	0.0	2.05	0.0	2.66	2.66	17.31	24.6	37.18	22.87
Merged-chr5-120514423-3	chr5	120514307	120514507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	3215.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	42.4	22.13	58.76	65.96	62.18	70.87	118.25	145.15	69.43	44.19	93.96	50.75
Merged-chr3-89246409-3	chr3	89246304	89246504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	-34.0	NM_025327	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	40.78	32.2	42.21	41.43	45.0	51.43	17.61	45.39	56.84	43.68	49.24	31.01
Merged-chr2-25547012-3	chr2	25546914	25547114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	-74.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	170.81	186.89	178.55	171.74	200.05	210.09	158.11	169.21	240.94	232.47	309.03	159.14
Merged-chr6-108566752-3	chr6	108566646	108566846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56421.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	55.72	45.28	52.48	69.18	56.87	51.43	46.84	64.18	58.61	70.29	103.01	46.99
Merged-chr13-41596893-3	chr13	41596805	41597005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9311.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	25.84	24.15	26.24	51.48	25.36	22.26	29.23	31.65	17.31	22.59	39.19	20.36
Merged-chr8-123032918-3	chr8	123032811	123033011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	9373.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	36.75	41.75	36.51	35.8	52.37	65.22	20.59	35.75	57.24	38.16	78.39	33.83
Merged-chrX-7697098-3	chrX	7696989	7697189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173747)	promoter-TSS (NM_173747)	-45.0	NM_173747	209416.0	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	60.97	60.12	91.84	70.79	76.5	71.49	53.48	63.7	60.78	65.27	98.99	47.62
Merged-chr11-117963560-3	chr11	117963472	117963672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5794.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	213.2	175.06	177.98	158.87	217.64	253.99	112.27	128.3	220.88	217.41	260.79	145.98
Merged-chr12-108835945-3	chr12	108835860	108836060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-84.0	NM_181328	214663.0	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	103.37	58.61	97.55	88.89	116.59	148.32	92.34	163.82	141.81	99.92	214.56	78.94
Merged-chr6-128408741-3	chr6	128408643	128408843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133927)	TTS (NM_133927)	8977.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	31.5	24.4	39.36	44.64	36.41	28.85	36.21	55.09	26.95	8.03	36.18	28.51
Merged-chr2-91928039-3	chr2	91927957	91928157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	3645.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	22.21	20.88	27.38	19.71	31.09	37.32	22.92	33.48	27.93	28.12	34.67	25.06
Merged-chr18-4367328-3	chr18	4367228	4367428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8264.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	41.59	43.51	49.06	53.49	64.64	79.33	59.13	81.59	66.48	70.29	99.99	37.28
Merged-chr6-128888950-3	chr6	128888842	128889042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1355.0	NM_001289707	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	116.29	97.09	98.69	92.51	122.73	135.15	81.38	110.94	120.18	93.39	128.13	48.87
Merged-chr12-69361522-3	chr12	69361414	69361614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4338.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	222.9	263.35	258.42	263.44	229.51	276.26	224.88	114.65	256.68	349.47	291.44	201.12
Merged-chr2-166623734-3	chr2	166623601	166623801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	59179.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	22.21	7.55	16.54	27.75	28.64	20.38	21.59	25.88	23.8	23.1	23.62	19.74
Merged-chr7-6286432-3	chr7	6286329	6286529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-151.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	155.87	179.09	141.47	181.79	209.87	231.1	179.04	180.17	216.95	217.91	335.66	141.91
Merged-chr18-26863698-3	chr18	26863587	26863787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1109530.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	24.63	34.46	34.23	37.4	29.05	25.09	32.55	48.76	64.91	48.2	117.58	41.04
Merged-chr18-61087110-3	chr18	61087026	61087226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18446.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	29.07	26.41	50.77	27.75	42.55	40.76	53.15	64.51	47.6	39.67	65.32	38.85
Merged-chr7-25268174-3	chr7	25268078	25268278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	479.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	280.64	338.56	421.57	399.79	362.87	430.22	355.42	374.05	424.26	440.85	521.07	261.89
Merged-chr11-44414983-5	chr11	44414867	44415067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001303244)	TTS (NM_001303244)	14904.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	58.15	51.81	78.72	64.35	45.41	57.38	56.14	60.22	67.46	85.86	91.95	59.21
Merged-chr19-8942442-1	chr19	8942342	8942542	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_144872)	TTS (NM_144872)	522.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	12.11	15.34	7.99	8.45	7.36	10.03	13.29	8.13	7.87	15.57	12.06	12.84
Merged-chr1-191317976-3	chr1	191317872	191318072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025424, exon 1 of 4)	exon (NM_025424, exon 1 of 4)	146.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	22.21	39.24	38.22	29.76	32.32	42.96	50.49	29.44	33.83	39.16	30.15	34.15
Merged-chr16-77034868-3	chr16	77034754	77034954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 2 of 23)	MIR|SINE|MIR	20785.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	24.63	27.17	35.37	21.32	32.73	29.79	27.9	46.71	33.63	33.14	49.75	22.24
Merged-chr16-31234194-3	chr16	31234117	31234317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER112|DNA|hAT-Charlie	-32979.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	125.58	123.75	102.68	119.05	146.46	173.41	85.37	100.79	146.14	151.13	115.07	88.34
Merged-chr13-37581073-3	chr13	37580970	37581170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	235725.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	29.88	31.19	47.92	42.63	29.46	53.93	29.23	26.13	37.96	28.12	49.75	14.41
Merged-chr17-34135504-3	chr17	34135414	34135614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9902.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	159.5	148.65	120.37	106.99	114.14	170.9	82.71	130.18	176.63	173.73	168.83	89.28
Merged-chr13-113435344-3	chr13	113435255	113435455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	67489.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	44.01	37.48	73.59	30.16	55.23	52.99	58.46	47.72	65.1	39.67	53.26	20.99
Merged-chr8-119423967-3	chr8	119423861	119424061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13201.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	44.42	29.93	42.21	48.67	45.82	44.53	25.91	54.39	43.86	32.64	36.68	28.51
Merged-chr17-47010556-3	chr17	47010465	47010665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-33.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	65.01	66.4	66.17	68.37	80.59	95.64	37.87	72.39	122.93	95.4	136.68	56.7
Merged-chr16-55863559-3	chr16	55863470	55863670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 3 of 5)	intron (NM_001134457, intron 3 of 5)	-24929.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	27.86	20.12	28.52	26.95	24.96	33.24	18.6	29.72	37.57	32.64	29.65	22.87
Merged-chr15-10877825-1	chr15	10877725	10877925	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	48774.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	2.83	2.01	2.28	2.01	1.64	5.02	8.97	9.64	6.88	7.03	9.55	4.07
Merged-chr7-28377543-3	chr7	28377420	28377620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011756, exon 2 of 2)	3' UTR (NM_011756, exon 2 of 2)	1708.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	56.13	56.09	24.53	14.48	24.55	75.57	25.24	14.69	55.86	71.3	38.19	16.29
Merged-chr4-126260967-3	chr4	126260854	126261054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1451.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	39.98	29.93	26.81	24.13	45.0	49.54	37.54	30.98	40.12	46.19	41.71	19.42
Merged-chr17-80061421-3	chr17	80061352	80061552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152119, intron 1 of 13)	CpG	816.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	10.9	21.63	35.94	27.75	22.91	38.88	42.19	32.55	28.52	27.11	37.69	21.93
Merged-chr4-132618024-3	chr4	132617922	132618122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21024.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	83.59	80.74	75.87	67.57	97.78	120.41	44.18	80.61	90.28	95.4	89.44	63.59
Merged-chr6-85432031-3	chr6	85431970	85432170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144918)	promoter-TSS (NM_144918)	94.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	31.5	28.17	17.11	25.34	27.0	29.16	29.56	17.16	28.52	44.19	40.2	16.92
Merged-chr16-38346984-3	chr16	38346849	38347049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-50.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	113.06	113.94	99.26	105.38	99.82	139.85	87.03	112.49	179.97	126.53	162.8	83.33
Merged-chr11-23769827-3	chr11	23769724	23769924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	1146.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	56.53	48.54	57.62	51.08	50.32	65.54	51.82	69.53	74.74	62.26	114.06	40.41
Merged-chr19-12502152-3	chr19	12502045	12502245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172442)	promoter-TSS (NM_172442)	-149.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	86.41	93.07	101.54	53.49	64.23	113.51	52.82	63.73	74.15	64.27	75.87	51.69
Merged-chr19-42001413-3	chr19	42001317	42001517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19654.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	27.46	28.93	32.52	28.96	45.82	54.88	55.47	62.64	44.84	38.66	48.74	29.45
Merged-chr2-153168333-3	chr2	153168228	153168428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7027.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	19.79	17.61	42.78	28.15	43.36	34.81	51.49	32.33	44.45	41.67	37.18	17.54
Merged-chr15-39968280-1	chr15	39968180	39968380	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045719)	TTS (NR_045719)	5631.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	13.73	7.04	4.56	6.84	18.0	21.95	14.95	21.31	9.05	6.03	2.01	1.25
Merged-chr7-90482862-3	chr7	90482754	90482954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6859.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	35.53	35.72	55.9	47.06	47.46	53.93	53.48	72.36	18.88	17.57	23.62	23.81
Merged-chr5-105876456-3	chr5	105876363	105876563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-105.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	121.54	116.21	138.62	121.06	117.41	140.17	114.27	126.08	192.75	162.68	263.8	114.97
Merged-chr2-173018126-1	chr2	173018026	173018226	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3776.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	4.85	7.55	1.71	9.25	17.18	16.62	8.97	12.67	12.19	7.03	5.53	6.27
Merged-chr14-7987105-3	chr14	7987004	7987204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 2 of 7)	intron (NM_007870, intron 2 of 7)	7078.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	56.94	67.41	73.59	68.78	51.55	43.9	46.17	45.93	76.31	47.7	50.25	36.34
Merged-chr18-90579700-3	chr18	90579601	90579801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-124.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	73.09	81.24	138.05	123.07	117.82	139.85	126.56	171.95	157.94	134.56	252.25	113.4
Merged-chr15-86212390-3	chr15	86212309	86212509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2050.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	97.31	56.59	104.39	105.38	98.59	90.0	121.57	122.94	117.42	111.97	163.31	114.66
Merged-chr8-10946177-3	chr8	10946061	10946261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17704.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	59.36	74.2	65.03	58.32	49.91	55.5	56.8	68.92	64.32	34.65	52.76	26.63
Merged-chr11-49984143-3	chr11	49984047	49984247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41184.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	53.7	44.77	27.95	21.32	37.23	50.8	31.89	8.41	59.4	57.24	23.11	19.42
Merged-chr13-93997189-3	chr13	93997105	93997305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60591.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	8.88	12.83	15.4	14.88	15.14	10.03	16.94	21.79	24.98	23.6	9.55	13.47
Merged-chr9-25509016-3	chr9	25508915	25509115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	27418.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	130.02	123.25	194.53	152.03	183.69	218.87	200.63	200.55	229.93	173.23	263.3	133.14
Merged-chr3-51209962-3	chr3	51209887	51210087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-14460.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	29.48	36.97	66.17	47.46	114.14	91.88	85.7	100.68	81.82	85.36	114.06	59.83
Merged-chr7-42692789-3	chr7	42692692	42692892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-74.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	39.98	30.43	48.49	43.84	52.37	50.49	43.18	61.23	51.73	40.67	125.12	59.52
Merged-chr2-23068126-3	chr2	23068018	23068218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-83.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	67.43	69.67	65.03	63.55	61.37	67.73	62.45	71.27	75.72	60.25	117.58	39.47
Merged-chr6-83033561-3	chr6	83033460	83033660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-89.0	NM_001291799	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	54.92	44.77	26.81	53.09	69.55	63.97	51.15	38.89	51.53	54.23	57.28	41.04
Merged-chr7-45238114-3	chr7	45238019	45238219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007645, intron 2 of 7)	intron (NM_007645, intron 2 of 7)	720.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	17.77	19.12	50.2	24.13	44.18	40.14	49.83	54.7	29.7	26.61	35.17	26.0
Merged-chr16-22398932-3	chr16	22398842	22399042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358428, intron 9 of 12)	intron (NM_001358428, intron 9 of 12)	39426.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	41.19	30.43	29.09	24.53	22.5	34.81	24.25	26.44	46.22	50.21	60.3	30.39
Merged-chrX-167092072-3	chrX	167091975	167092175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21705.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	22.21	13.08	18.83	29.36	42.55	56.13	36.54	53.5	39.73	32.64	35.68	12.22
Merged-chr2-80315070-3	chr2	80314971	80315171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-395.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	25.04	26.16	33.09	24.94	19.23	27.59	19.27	28.93	36.19	45.19	24.12	22.24
Merged-chr16-56029789-3	chr16	56029704	56029904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024622)	promoter-TSS (NM_001024622)	-87.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	127.6	98.35	114.66	114.22	136.64	170.9	90.02	142.99	199.84	173.73	257.77	84.9
Merged-chr4-33248639-3	chr4	33248503	33248703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033225, exon 1 of 2)	5' UTR (NM_001033225, exon 1 of 2)	184.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	285.48	338.56	314.89	313.72	325.65	413.6	318.88	327.95	409.31	442.86	564.29	267.53
Merged-chr7-16046595-3	chr7	16046507	16046707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25238.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	39.98	29.43	33.66	24.94	45.41	45.78	30.23	40.79	43.66	29.12	53.77	39.16
Merged-chr9-21030961-3	chr9	21030884	21031084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023892)	TTS (NM_023892)	-1054.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	117.1	110.67	69.03	98.54	109.23	141.42	71.08	95.66	149.68	153.64	134.67	93.98
Merged-chr6-89258324-3	chr6	89258231	89258431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27394.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	53.7	41.0	57.62	84.86	56.87	71.81	57.47	92.44	72.58	66.78	95.97	71.11
Merged-chr15-39784086-3	chr15	39783983	39784183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-12962.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	83.18	106.4	94.7	75.21	126.41	188.14	140.51	125.19	183.71	159.67	161.3	90.85
Merged-chr11-87759732-3	chr11	87759616	87759816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172449)	promoter-TSS (NM_172449)	-825.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	32.3	46.03	30.23	34.19	38.05	52.37	18.27	25.91	27.34	33.64	44.72	26.94
Merged-chr11-120348487-3	chr11	120348352	120348552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038126)	promoter-TSS (NR_038126)	43.0	NM_001313923	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	144.16	116.96	83.86	63.95	74.05	148.63	37.87	30.5	147.91	170.21	103.01	72.68
Merged-chr7-102247141-3	chr7	102247045	102247245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	2973.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	20.59	21.88	26.81	26.55	28.64	31.36	34.55	24.76	43.47	61.26	55.27	23.18
Merged-chr3-59120118-3	chr3	59120019	59120219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	10643.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	72.28	61.12	86.71	96.53	60.96	49.86	51.49	80.52	52.52	30.63	50.75	30.07
Merged-chr2-13557508-6	chr2	13557405	13557605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12841.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	18.57	12.58	17.68	28.56	11.86	21.01	22.92	19.65	21.44	21.09	26.63	17.86
Merged-chr15-27923829-3	chr15	27923733	27923933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	102015.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	46.44	42.01	27.38	34.99	51.14	77.45	29.23	48.31	56.45	53.73	82.41	28.19
Merged-chr14-31419456-1	chr14	31419356	31419556	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-1779.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	1.62	1.51	3.42	11.26	4.91	2.82	6.64	8.16	1.77	3.51	12.06	5.33
Merged-chr3-96268641-3	chr3	96268547	96268747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	-7.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	56.13	53.58	25.1	51.88	63.82	50.49	37.54	39.25	50.16	66.28	65.83	41.04
Merged-chr17-15826634-3	chr17	15826552	15826752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-66.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	148.19	109.92	139.19	194.66	147.28	146.44	103.31	191.75	191.38	180.76	255.26	141.6
Merged-chrX-38564669-3	chrX	38564573	38564773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028288, intron 3 of 22)	CpG	11523.0	NM_028288	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	38.76	28.93	26.81	30.97	40.91	44.53	24.58	38.27	51.93	46.7	40.2	26.63
Merged-chr5-146676680-3	chr5	146676579	146676779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-91440.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	56.94	31.69	43.35	51.08	39.27	60.83	31.89	63.56	59.2	86.36	75.87	48.87
Merged-chr4-106840098-3	chr4	106839958	106840158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35051.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	18.57	21.13	23.96	13.27	40.5	37.0	14.62	18.67	48.98	34.14	40.7	18.17
Merged-chr2-11548740-3	chr2	11548635	11548835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	5194.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	39.98	38.74	56.48	47.86	40.5	35.75	40.86	55.07	42.29	31.63	52.76	40.1
Merged-chr11-119086338-3	chr11	119086235	119086435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007625)	promoter-TSS (NM_007625)	-98.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	96.91	97.59	104.96	76.82	110.87	129.82	61.78	75.9	146.14	135.57	147.23	79.26
Merged-chr18-64489091-3	chr18	64488996	64489196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348055)	promoter-TSS (NM_001348055)	2.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	116.7	112.43	142.61	150.02	171.82	143.93	139.18	177.34	169.55	158.16	193.96	75.18
Merged-chr8-83997029-3	chr8	83996935	83997135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	-637.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	92.47	86.27	84.43	79.64	111.28	83.72	72.41	77.08	134.34	135.57	134.16	83.33
Merged-chr17-35121407-3	chr17	35121306	35121506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	23.0	NM_001303445	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	157.08	142.11	132.35	112.62	177.96	243.02	94.0	106.26	212.82	212.89	180.39	111.21
Merged-chr2-136948135-3	chr2	136948022	136948222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	48771.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	30.69	27.42	27.95	41.43	48.27	42.96	57.47	69.93	39.34	61.76	65.32	24.75
Merged-chr8-78510403-3	chr8	78510291	78510491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104094, intron 1 of 9)	intron (NR_104094, intron 1 of 9)	1063.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	16.96	13.58	14.26	17.29	14.73	21.64	18.27	24.14	17.7	21.59	27.13	20.68
Merged-chr14-14640358-3	chr14	14640272	14640472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62653.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	18.57	26.41	25.1	31.77	26.18	28.54	30.23	37.82	23.01	25.61	46.23	20.68
Merged-chr2-117996891-3	chr2	117996779	117996979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114323.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	58.15	37.23	58.76	66.36	51.14	59.89	42.19	51.48	67.27	64.77	103.01	48.56
Merged-chr10-66920364-3	chr10	66920274	66920474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138560)	promoter-TSS (NR_138560)	10.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	33.52	35.21	29.66	28.56	56.05	66.16	51.15	50.89	86.15	57.74	75.87	34.15
Merged-chr12-80853827-3	chr12	80853700	80853900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	63268.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	59.76	36.47	49.63	52.29	43.77	55.5	38.2	42.31	57.24	48.7	59.29	34.46
Merged-chr1-45881519-3	chr1	45881421	45881621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44073.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	109.43	88.54	99.83	153.24	130.09	132.64	153.8	131.16	131.98	119.0	135.17	76.12
Merged-chr1-156474315-3	chr1	156474211	156474411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	17.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	52.49	53.32	50.77	54.7	60.55	63.66	39.86	67.51	85.76	73.81	64.82	64.53
Merged-chr15-76698093-3	chr15	76697978	76698178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_182805, exon 5 of 11)	exon (NM_182805, exon 5 of 11)	1352.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	116.7	91.81	95.84	89.69	91.64	113.83	62.78	75.67	132.57	115.99	137.18	85.52
Merged-chr15-97175224-3	chr15	97175128	97175328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7984.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	31.5	20.12	43.93	46.25	47.46	27.91	61.78	67.85	60.58	45.19	55.27	35.09
Merged-chr11-26586207-3	chr11	26586102	26586302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7718.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	77.53	58.1	40.5	73.2	51.96	44.84	49.83	78.06	56.45	43.18	54.27	24.75
Merged-chr10-66930876-3	chr10	66930778	66930978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10494.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	39.17	31.44	39.36	41.02	49.09	71.18	56.47	48.93	58.42	60.25	72.36	27.57
Merged-chr18-12168631-3	chr18	12168536	12168736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-94.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	163.54	140.1	145.47	109.8	193.1	196.3	144.16	147.95	206.72	187.29	195.47	108.7
Merged-chr5-35103287-3	chr5	35103179	35103379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2418.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	31.5	33.96	35.94	25.74	48.27	59.58	32.55	46.93	63.73	37.16	83.91	32.27
Merged-chr17-65730130-3	chr17	65730026	65730226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42626.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	67.84	72.19	61.61	94.92	52.37	87.49	57.8	88.71	115.85	95.9	134.67	74.24
Merged-chr4-150239768-1	chr4	150239668	150239868	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2444.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.25	1.51	1.14	2.41	14.32	5.02	5.98	12.87	7.67	6.53	5.02	5.64
Merged-chrX-103616940-3	chrX	103616839	103617039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028380, intron 1 of 10)	CpG	6815.0	NR_028381	78878.0	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	69.45	58.61	85.57	64.35	65.46	57.38	62.12	61.04	84.18	69.29	115.57	55.13
Merged-chr2-114175366-3	chr2	114175279	114175479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	-40.0	NM_001290788	11834.0	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	65.41	72.69	74.16	75.61	85.5	102.54	68.1	110.33	59.4	48.7	86.93	29.76
Merged-chr7-75455526-3	chr7	75455422	75455622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-12.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	122.35	128.78	161.44	180.99	123.55	176.86	107.96	225.03	182.33	126.53	249.73	138.46
Merged-chr13-113592941-3	chr13	113592858	113593058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_130796, exon 2 of 2)	3' UTR (NM_130796, exon 2 of 2)	25606.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	20.19	12.83	22.25	26.55	27.41	15.05	24.58	31.26	19.67	18.08	24.12	10.34
Merged-chr6-87552594-3	chr6	87552496	87552696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19337.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	67.43	54.58	65.03	40.62	80.18	121.98	71.75	58.37	137.48	84.86	109.04	56.7
Merged-chr3-95929194-3	chr3	95929092	95929292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253758)	promoter-TSS (NM_001253758)	-65.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	125.58	119.73	106.1	103.77	165.69	166.19	101.98	129.42	185.28	186.28	217.07	88.34
Merged-chr17-44027454-2	chr17	44027347	44027547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-51355.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	41.99	34.46	61.61	30.97	36.82	27.59	23.25	33.42	0.0	0.5	0.0	0.63
Merged-chr2-164867377-3	chr2	164867273	164867473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9665.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	65.01	38.23	63.32	55.91	57.27	67.73	66.77	74.92	73.17	85.86	91.45	45.74
Merged-chr1-21079344-3	chr1	21079254	21079454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-129.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	244.7	191.66	232.75	273.9	277.78	317.34	243.81	297.7	294.44	309.3	412.04	166.97
Merged-chr5-88508707-3	chr5	88508636	88508836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19161.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	56.53	64.39	61.04	76.02	62.18	42.65	65.77	54.45	85.76	78.33	104.52	59.52
Merged-chr17-88337866-3	chr17	88337752	88337952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102852.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	32.3	30.94	59.33	48.67	54.41	46.41	38.86	79.82	39.93	51.72	68.84	25.69
Merged-chr3-20017744-3	chr3	20017639	20017839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 8 of 16)	intron (NM_080634, intron 8 of 16)	17571.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	45.63	41.75	34.23	24.13	45.82	43.9	45.51	42.14	48.19	57.24	58.29	19.11
Merged-chr9-75547365-3	chr9	75547248	75547448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12309.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	15.75	13.83	17.68	26.55	22.91	29.16	9.63	30.39	63.14	43.18	50.75	31.95
Merged-chr16-20426427-3	chr16	20426332	20426532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-38.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	28.27	24.15	26.24	38.61	42.96	54.56	28.9	44.69	35.4	50.21	49.75	24.12
Merged-chr7-135598066-3	chr7	135597961	135598161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	4580.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	27.46	17.61	19.4	14.88	22.09	25.4	29.56	21.53	26.36	32.64	48.74	11.59
Merged-chr13-55369750-3	chr13	55369643	55369843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	11.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	48.46	32.95	31.95	49.07	58.5	51.11	37.2	40.71	64.32	82.35	70.85	42.6
Merged-chr12-105823672-3	chr12	105823565	105823765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347440, exon 16 of 21)	exon (NM_001347440, exon 16 of 21)	38968.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	16.15	13.58	33.66	24.13	33.14	21.01	15.61	37.85	29.7	19.08	18.59	21.93
Merged-chr15-38519433-3	chr15	38519330	38519530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102458)	promoter-TSS (NM_001102458)	-164.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	156.27	173.81	162.58	138.76	169.37	222.32	146.82	153.31	258.25	205.86	313.55	122.8
Merged-chrX-42069065-3	chrX	42068957	42069157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125870, intron 1 of 5)	intron (NR_125870, intron 1 of 5)	659.0	NR_125870	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	47.24	48.8	59.33	61.13	41.73	58.95	52.15	50.83	48.58	81.34	84.42	64.85
Merged-chr2-153090725-3	chr2	153090633	153090833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17735.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	86.41	62.63	116.94	69.18	98.59	113.2	83.71	88.37	104.64	112.47	158.78	89.28
Merged-chr11-101448412-3	chr11	101448298	101448498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-14.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	34.73	33.96	28.52	39.82	31.5	50.8	16.28	39.03	62.55	47.7	40.2	30.7
Merged-chr7-144943513-3	chr7	144943410	144943610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3585.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	37.15	33.7	23.96	29.36	30.68	43.9	18.27	27.25	51.73	29.12	50.75	23.49
Merged-chr15-8444625-3	chr15	8444520	8444720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-157.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	65.82	69.42	47.92	55.91	63.0	69.61	61.78	57.03	83.59	70.8	87.93	42.29
Merged-chrX-140537868-3	chrX	140537752	140537952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4816.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	57.34	58.61	87.28	80.84	58.5	65.85	51.82	78.65	54.29	63.27	89.44	48.56
Merged-chr5-33352558-2	chr5	33352450	33352650	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021500, intron 1 of 8)	L1MB7|LINE|L1	16978.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	7.67	3.77	5.7	6.03	18.41	13.48	17.61	15.98	16.92	22.09	16.58	13.16
Merged-chr6-129233041-3	chr6	129232959	129233159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 3 of 3)	intron (NR_040268, intron 3 of 3)	4986.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	247.53	204.74	220.77	236.09	222.14	250.86	174.72	214.49	231.11	252.06	260.29	138.78
Merged-chr2-150362760-3	chr2	150362672	150362872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-7.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	30.69	23.39	66.17	40.22	47.05	48.6	29.9	70.77	72.38	76.82	126.63	46.05
Merged-chr9-120110353-3	chr9	120110238	120110438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144793)	promoter-TSS (NM_144793)	-61.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	30.69	17.86	35.94	22.12	28.23	29.79	10.96	24.95	41.89	39.16	49.75	29.45
Merged-chr7-67526078-3	chr7	67525992	67526192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	MER21B|LTR|ERVL	119144.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	53.3	42.01	74.16	79.23	60.96	79.65	48.16	56.13	22.82	19.08	24.12	21.62
Merged-chr3-21953080-3	chr3	21952984	21953184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123568.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	108.62	106.9	108.96	116.24	126.0	152.08	117.59	137.64	175.84	189.8	166.82	83.02
Merged-chr7-122132966-3	chr7	122132861	122133061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289845)	promoter-TSS (NM_001289845)	-15.0	NM_001289845	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	138.5	123.0	141.47	148.41	142.78	163.37	122.57	109.26	176.63	168.71	159.79	113.09
Merged-chr2-158179160-3	chr2	158179066	158179266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12842.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	25.44	4.53	22.25	20.51	25.77	18.19	37.87	48.84	34.81	20.59	39.7	19.74
Merged-chr14-29978480-3	chr14	29978424	29978624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027493, exon 1 of 13)	exon (NM_027493, exon 1 of 13)	187.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	33.11	30.94	31.38	47.86	36.0	36.37	42.52	28.99	31.67	31.63	27.64	22.87
Merged-chr6-72391331-3	chr6	72391229	72391429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016794)	promoter-TSS (NM_016794)	-662.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	16.96	21.88	38.79	6.84	28.64	33.87	22.26	19.51	52.32	35.65	47.23	22.87
Merged-chr9-56465499-3	chr9	56465399	56465599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	46880.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	52.9	50.05	74.16	55.1	85.5	88.74	63.11	79.91	68.05	88.87	89.44	61.71
Merged-chr2-12053477-3	chr2	12053394	12053594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247752.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	27.46	15.09	26.81	49.07	25.36	24.46	32.88	41.07	41.5	39.16	40.7	49.18
Merged-chr7-126745135-1	chr7	126745035	126745235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-14491.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	14.94	13.33	18.25	5.63	1.23	5.33	2.66	0.2	4.92	1.0	3.01	6.58
Merged-chr3-152210958-3	chr3	152210848	152211048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356364)	promoter-TSS (NM_001356364)	526.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	49.67	43.26	59.33	49.87	70.77	55.5	86.7	49.71	69.43	85.36	83.41	60.77
Merged-chr2-119208893-3	chr2	119208762	119208962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139139)	promoter-TSS (NM_139139)	-67.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	84.8	95.83	93.55	139.56	100.23	130.13	87.03	110.8	112.11	132.05	187.93	105.26
Merged-chr2-167589477-3	chr2	167589397	167589597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	42508.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	136.08	140.1	135.2	89.29	135.82	201.0	80.05	108.76	146.93	155.65	200.49	78.0
Merged-chr15-73731063-3	chr15	73730968	73731168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6138.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	39.17	26.16	42.78	14.48	34.77	50.8	28.23	31.96	52.32	39.67	48.74	16.6
Merged-chr15-79742558-3	chr15	79742445	79742645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205345)	promoter-TSS (NM_001205345)	-9.0	NM_001205345	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	56.94	51.06	64.46	46.66	54.82	75.26	28.23	42.06	72.38	73.31	71.86	45.11
Merged-chr17-33640157-5	chr17	33640004	33640204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028279, intron 1 of 9)	intron (NR_028279, intron 1 of 9)	2009.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	42.8	32.7	55.9	49.07	44.59	46.72	38.53	38.41	38.35	38.66	34.17	26.63
Merged-chr8-37037663-2	chr8	37037554	37037754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13416.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	30.28	21.13	64.46	48.26	40.09	30.73	28.23	44.41	2.16	0.5	3.01	2.19
Merged-chr7-19823628-3	chr7	19823529	19823729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-874.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	42.8	30.94	54.76	45.05	46.64	43.9	48.16	64.49	49.17	47.7	67.84	32.89
Merged-chr4-128983929-3	chr4	128983857	128984057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-9267.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	74.3	55.84	94.13	61.13	126.41	90.94	86.7	118.71	97.95	65.27	112.56	73.3
Merged-chr3-30855720-3	chr3	30855621	30855821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-229.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	24.23	31.94	39.93	33.78	47.87	29.48	23.25	38.94	40.32	39.16	38.69	38.22
Merged-chr14-54410096-3	chr14	54410021	54410221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	-649.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	31.09	15.85	18.25	12.47	27.0	50.49	40.52	42.73	19.28	27.62	18.59	12.22
Merged-chr8-117262881-3	chr8	117262777	117262977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	5858.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	27.05	27.67	33.66	24.53	31.91	48.6	26.57	27.45	38.94	38.16	39.19	21.62
Merged-chr4-48124946-3	chr4	48124838	48125038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	19.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	53.7	37.23	45.07	55.5	63.41	56.13	50.49	63.87	67.27	66.28	73.86	53.57
Merged-chr13-14630228-3	chr13	14630144	14630344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001104646)	promoter-TSS (NM_001104646)	-1.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	46.84	32.45	46.78	40.62	60.14	59.58	55.47	88.32	59.4	66.78	73.36	33.52
Merged-chr8-115398200-3	chr8	115398108	115398308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	308686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	37.96	36.22	71.31	55.91	49.09	63.03	44.18	60.95	95.59	97.41	126.63	45.42
Merged-chrX-75674242-3	chrX	75674132	75674332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90467.0	NR_029443	74396.0	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik|Dxz4	RIKEN cDNA 4933407K13 gene	ncRNA	157.08	123.75	128.92	160.88	162.82	196.61	109.62	195.79	216.55	231.97	250.24	142.85
Merged-chr11-116853680-2	chr11	116853588	116853788	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-74.0	NM_001361585	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	61.38	52.57	47.35	37.0	50.73	58.95	41.52	44.38	72.58	77.32	77.88	68.61
Merged-chr5-123076277-3	chr5	123076166	123076366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039723)	promoter-TSS (NM_001039723)	-9.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	83.99	78.48	91.84	70.79	63.41	77.45	51.49	61.4	108.18	86.36	118.08	52.0
Merged-chrX-159645496-1	chrX	159645396	159645596	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	18224.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.04	2.77	2.28	6.03	13.09	1.57	4.32	10.04	1.77	1.51	4.52	3.13
Merged-chr12-72070444-3	chr12	72070349	72070549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181752, exon 1 of 1)	exon (NM_181752, exon 1 of 1)	542.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	26.25	36.22	34.8	41.83	49.5	36.37	22.92	46.79	50.16	36.15	53.77	29.76
Merged-chr3-126696765-3	chr3	126696676	126696876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	99825.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	35.53	27.17	42.78	32.58	34.77	38.57	24.58	51.0	50.35	43.68	56.78	29.45
Merged-chr3-97964987-3	chr3	97964857	97965057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	34784.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	62.18	50.31	92.98	74.41	49.5	90.94	62.78	87.42	73.56	61.26	64.32	36.65
Merged-chr2-143035162-3	chr2	143035058	143035258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27911.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	27.46	30.94	37.08	49.07	38.46	43.9	48.16	81.93	61.56	61.76	82.91	39.78
Merged-chr11-97415511-3	chr11	97415404	97415604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34656.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	40.38	33.96	22.82	23.73	35.18	42.02	16.61	31.51	58.42	41.67	38.19	18.17
Merged-chr17-48230887-3	chr17	48230770	48230970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	-1869.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	19.38	13.83	32.52	31.37	21.27	29.16	23.25	30.45	22.62	19.58	54.77	14.1
Merged-chr2-52941800-3	chr2	52941665	52941865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83897.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	80.76	59.61	54.76	37.4	75.28	120.41	57.47	53.92	84.38	85.36	75.37	30.39
Merged-chr8-123041247-3	chr8	123041141	123041341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1043.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	52.49	56.09	47.92	41.83	55.23	78.08	26.57	51.73	84.18	88.37	101.0	48.56
Merged-chr12-85472260-3	chr12	85472155	85472355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1635.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	113.06	96.59	115.23	154.04	167.73	128.25	100.32	141.39	114.87	115.99	222.1	122.8
Merged-chr5-72170306-3	chr5	72170218	72170418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2129.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	79.55	83.51	81.58	109.0	65.05	92.19	74.74	92.13	84.58	91.89	86.93	57.01
Merged-chr17-64754214-3	chr17	64754115	64754315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12896.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	150.21	145.89	116.94	152.43	135.41	183.75	136.19	145.65	145.94	179.25	186.92	87.71
Merged-chr8-47533559-3	chr8	47533457	47533657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177240)	promoter-TSS (NM_177240)	-87.0	NM_177240	320714.0	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	181.3	161.23	203.08	203.51	255.28	238.63	216.91	279.65	248.61	198.33	314.05	150.05
Merged-chrX-134554619-3	chrX	134554523	134554723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013482, intron 11 of 18)	intron (NM_013482, intron 11 of 18)	-12953.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	26.65	11.32	31.95	30.16	38.05	24.15	20.93	35.3	47.01	26.11	47.74	22.56
Merged-chr3-65957407-3	chr3	65957300	65957500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 2 of 10)	intron (NM_019937, intron 2 of 10)	849.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	65.82	68.42	76.44	65.56	76.5	119.16	77.73	88.96	97.36	100.92	141.7	52.63
Merged-chr9-65535397-3	chr9	65535292	65535492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44695.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	150.21	117.97	158.02	140.37	142.37	198.18	104.3	131.64	185.87	176.24	208.03	118.1
Merged-chr6-15729007-3	chr6	15728902	15729102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8341.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	39.17	46.53	55.33	48.26	55.64	49.54	49.49	69.53	69.63	51.72	60.8	38.53
Merged-chr5-45856616-3	chr5	45856502	45856702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172153)	promoter-TSS (NM_172153)	-50.0	NM_172153	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	53.3	41.5	41.64	59.53	67.09	46.41	39.2	57.93	60.97	43.68	51.25	45.74
Merged-chr3-89202860-3	chr3	89202778	89202978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008094)	promoter-TSS (NM_008094)	-47.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	28.67	24.4	29.09	19.71	43.36	34.81	20.59	31.43	40.52	34.65	25.63	37.91
Merged-chr14-14800547-3	chr14	14800461	14800661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20254.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	19.79	15.34	25.1	14.48	28.64	30.73	28.9	43.65	22.23	23.6	36.68	20.99
Merged-chr2-27540292-3	chr2	27540191	27540391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25144.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	164.34	157.96	131.78	155.25	165.69	228.28	122.57	137.13	213.6	208.37	200.49	96.8
Merged-chr2-145859520-3	chr2	145859441	145859641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-43700.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	53.3	24.9	60.47	40.62	64.23	58.95	48.83	68.13	41.5	36.15	51.76	17.23
Merged-chr2-18672321-3	chr2	18672219	18672419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147778)	promoter-TSS (NM_147778)	-143.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	86.41	87.78	68.45	69.58	109.23	104.11	68.76	58.43	155.38	113.48	117.58	74.87
Merged-chr3-100440894-3	chr3	100440787	100440987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14482.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	38.36	26.16	55.33	63.95	54.82	27.28	27.57	71.52	92.64	55.23	119.59	63.28
Merged-chr7-142340259-3	chr7	142340158	142340358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	32001.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	39.98	34.71	46.21	52.69	34.77	52.68	39.53	33.08	49.96	38.16	43.72	26.63
Merged-chr15-62392564-3	chr15	62392453	62392653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-173102.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	59.76	44.52	54.76	57.11	73.64	78.08	59.79	59.24	84.18	60.75	95.47	41.35
Merged-chr3-84715232-3	chr3	84715119	84715319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49027.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	54.92	58.35	49.06	66.77	81.41	108.81	68.76	78.53	67.66	79.33	84.42	46.68
Merged-chr2-166712483-3	chr2	166712384	166712584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1348.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	25.44	20.12	26.81	24.94	34.36	27.28	21.59	21.93	36.98	36.15	50.25	17.54
Merged-chr3-121890790-3	chr3	121890689	121890889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62440.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	58.95	50.56	105.53	56.71	63.41	55.82	57.47	97.6	70.41	44.69	77.88	48.87
Merged-chr8-115612327-3	chr8	115612219	115612419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_B_Mam|LINE|RTE-X	94575.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	80.36	83.26	78.72	91.3	85.09	86.55	64.77	82.4	100.11	114.98	148.23	66.41
Merged-chr15-76243461-3	chr15	76243357	76243557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163575)	promoter-TSS (NM_001163575)	-17.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	55.72	63.64	59.33	45.45	57.68	51.11	27.57	57.14	86.54	74.81	66.33	40.1
Merged-chr4-117915143-3	chr4	117915043	117915243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-144.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	63.4	58.86	66.74	65.16	73.64	71.81	74.74	51.22	53.11	73.81	62.31	56.07
Merged-chr3-38143710-3	chr3	38143603	38143803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64416.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	16.15	28.17	22.25	28.56	25.77	27.59	27.24	48.42	34.22	31.63	60.8	31.95
Merged-chr8-85299683-3	chr8	85299589	85299789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022997)	promoter-TSS (NM_022997)	57.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	52.49	62.13	63.32	71.59	65.46	57.7	56.14	48.36	65.69	65.27	75.37	46.99
Merged-chr16-21642202-3	chr16	21642112	21642312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	52453.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	237.84	217.82	229.89	279.93	227.87	313.57	214.25	231.0	257.27	263.61	348.22	170.1
Merged-chr5-90903706-3	chr5	90903618	90903818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-181.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	195.84	146.64	175.13	111.81	202.51	248.04	207.94	158.94	237.21	276.16	268.83	132.51
Merged-chr5-18014390-3	chr5	18014279	18014479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51809.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	121.54	126.52	160.87	141.57	150.55	148.95	150.47	184.96	163.45	197.33	159.79	103.06
Merged-chr16-58482798-3	chr16	58482667	58482867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	MLT1J|LTR|ERVL-MaLR	40659.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	18.17	12.58	37.08	17.29	29.05	28.85	32.55	41.86	29.7	22.59	44.22	20.99
Merged-chr19-43512222-3	chr19	43512138	43512338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	B3|SINE|B2	12367.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	107.41	85.77	136.34	141.17	126.0	131.7	123.9	128.3	269.66	265.61	278.38	142.22
Merged-chr10-80678343-3	chr10	80678240	80678440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2047.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	40.38	38.23	58.76	31.37	76.09	50.17	37.87	63.7	56.84	49.21	80.9	40.1
Merged-chr8-111033828-3	chr8	111033760	111033960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146217)	promoter-TSS (NM_146217)	18.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	96.91	87.28	142.61	74.41	89.18	122.61	62.78	90.76	135.71	145.61	135.17	107.76
Merged-chr6-128843239-3	chr6	128843148	128843348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16933.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	96.91	84.26	92.98	103.37	99.41	128.56	85.37	72.42	148.11	141.09	146.22	104.0
Merged-chr15-99392866-3	chr15	99392752	99392952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-95.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	176.46	173.05	178.55	148.81	133.78	183.75	85.7	111.53	207.11	167.2	239.18	134.39
Merged-chr1-172470188-1	chr1	172470088	172470288	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-5172.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.0	0.5	0.0	0.4	0.41	0.0	0.66	0.0	33.04	44.19	46.73	30.07
Merged-chr4-154899167-3	chr4	154899045	154899245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-102.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	109.43	82.25	101.54	92.51	142.78	127.31	100.32	123.81	122.93	156.66	183.91	79.57
Merged-chr4-46602150-3	chr4	46602036	46602236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164804)	promoter-TSS (NM_001164804)	-207.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	49.26	54.58	42.78	65.16	42.96	43.9	44.84	33.39	43.47	57.24	53.26	33.83
Merged-chr19-9914015-3	chr19	9913934	9914134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14501.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	39.98	49.55	66.17	52.29	52.77	61.46	64.77	61.07	47.01	37.66	48.74	28.19
Merged-chr7-121034534-3	chr7	121034434	121034634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	89.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	66.63	63.13	77.01	72.4	70.37	80.59	50.82	56.78	109.95	87.37	115.07	57.95
Merged-chr3-51342666-3	chr3	51342543	51342743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1999.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	14.54	14.09	23.39	6.03	29.86	29.16	16.61	15.08	24.78	21.59	29.14	12.53
Merged-chr13-67128210-3	chr13	67128123	67128323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172392)	promoter-TSS (NM_172392)	-5.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	37.55	32.95	28.52	39.01	53.59	38.26	35.21	33.81	68.05	77.83	81.9	44.17
Merged-chr4-53187399-3	chr4	53187305	53187505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27510.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	25.84	17.61	38.79	34.99	29.86	35.75	21.26	38.5	33.44	21.59	53.26	20.36
Merged-chr16-28911741-3	chr16	28911682	28911882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	17916.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	7.27	22.13	14.83	23.73	12.27	18.19	24.58	14.1	31.27	37.16	23.62	19.42
Merged-chr17-6828000-3	chr17	6827901	6828101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45221.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	57.34	63.64	50.2	48.67	55.64	80.9	60.79	56.75	70.81	91.38	75.87	39.78
Merged-chr7-24443200-1	chr7	24443100	24443300	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	2482.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	3.23	1.51	0.0	0.0	3.27	6.27	10.96	9.45	1.38	2.01	0.0	2.19
Merged-chr14-16365659-3	chr14	16365531	16365731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009409, exon 1 of 36)	5' UTR (NM_009409, exon 1 of 36)	425.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	30.69	43.51	43.35	32.58	40.5	31.98	45.51	40.26	45.04	37.16	81.4	40.41
Merged-chr15-58823631-3	chr15	58823534	58823734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-207.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	218.05	205.75	181.98	212.76	225.42	254.93	207.94	192.45	223.04	301.26	292.95	145.98
Merged-chr10-128094836-3	chr10	128094764	128094964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	2081.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	39.98	38.74	48.49	34.19	42.96	58.01	19.27	49.68	51.73	58.75	67.33	32.89
Merged-chr13-51315724-3	chr13	51315629	51315829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92889.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	24.23	15.59	11.41	30.57	19.64	23.2	22.26	30.81	27.14	19.58	29.14	15.66
Merged-chr1-30950016-5	chr1	30949926	30950126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-271.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	167.17	155.44	125.5	133.53	177.55	204.14	191.0	161.27	121.36	204.86	157.78	111.21
Merged-chr15-38302395-3	chr15	38302290	38302490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1679.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	15.75	12.07	25.67	16.49	26.59	18.19	24.58	26.86	21.24	23.1	25.12	16.6
Merged-chr4-118360538-1	chr4	118360438	118360638	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	539.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	8.48	6.04	11.98	3.62	16.77	17.87	18.93	17.05	6.49	4.52	10.05	7.52
Merged-chr8-57651752-2	chr8	57651631	57651831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040698)	promoter-TSS (NR_040698)	-22.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	7.67	13.33	14.83	14.48	7.36	15.05	8.97	10.6	13.57	6.53	15.07	5.33
Merged-chrX-38335053-3	chrX	38334934	38335134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290389, exon 8 of 8)	3' UTR (NM_001290389, exon 8 of 8)	18912.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	26.65	24.9	30.8	43.04	46.64	53.93	38.86	47.47	46.62	53.22	49.75	31.64
Merged-chr14-122105042-3	chr14	122104944	122105144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015586, exon 2 of 4)	non-coding (NR_015586, exon 2 of 4)	1930.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	142.54	135.83	108.39	97.33	122.32	170.58	79.39	152.05	152.83	130.55	203.0	89.59
Merged-chr6-124505227-3	chr6	124505129	124505329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181344, intron 2 of 5)	L3|LINE|CR1	-7392.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	32.3	23.39	36.51	22.93	50.73	47.98	35.21	48.48	46.62	35.65	50.75	34.46
Merged-chr11-52099895-3	chr11	52099756	52099956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1032.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	34.32	18.11	33.09	32.58	37.64	62.71	41.85	37.12	62.35	51.72	72.36	35.09
Merged-chr6-86556857-3	chr6	86556749	86556949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	B1F1|SINE|Alu	29448.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	40.38	44.02	39.36	45.45	35.59	45.15	36.87	54.36	60.78	43.68	56.78	46.99
Merged-chr14-75834776-2	chr14	75834671	75834871	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10193.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	37.96	33.45	29.66	41.02	64.23	51.11	40.19	50.72	71.0	72.3	92.46	40.1
Merged-chr1-151040565-3	chr1	151040477	151040677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-47142.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	30.28	14.59	32.52	30.97	29.46	26.97	18.27	26.27	29.31	37.66	27.13	22.24
Merged-chr11-103223605-3	chr11	103223497	103223697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 14 of 15)	intron (NM_016896, intron 14 of 15)	-5165.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	29.48	35.21	48.49	56.31	32.32	42.33	22.59	45.67	34.22	46.19	53.77	45.11
Merged-chr5-115301075-3	chr5	115300991	115301191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019682)	promoter-TSS (NM_019682)	-29.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	159.9	164.25	145.47	153.24	169.78	183.44	108.62	145.57	190.0	196.32	166.32	89.28
Merged-chr5-92344637-1	chr5	92344537	92344737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	Lx8|LINE|L1	4252.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.23	12.58	2.28	0.4	3.27	6.59	0.66	0.22	4.33	3.51	1.0	1.57
Merged-chr9-102988777-3	chr9	102988674	102988874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19715.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	20.59	16.85	44.5	26.14	28.64	21.64	13.29	26.58	37.96	30.63	43.21	16.6
Merged-chr9-116059261-3	chr9	116059172	116059372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	B3A|SINE|B2	116091.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	62.99	45.78	74.16	57.92	70.77	67.73	53.81	64.93	111.13	76.82	104.01	60.15
Merged-chr11-83663721-3	chr11	83663614	83663814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1130.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	60.97	42.01	46.21	45.85	55.64	76.2	38.86	46.29	49.76	51.21	60.8	36.03
Merged-chr19-55649575-3	chr19	55649479	55649679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	52625.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	151.83	160.98	156.31	156.86	182.05	194.42	114.27	125.41	160.1	226.95	214.56	106.2
Merged-chr11-103697989-3	chr11	103697776	103697976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019650)	promoter-TSS (NM_019650)	152.0	NR_102396	399609.0	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	42.8	52.57	43.35	36.2	27.82	66.79	45.18	29.02	48.58	51.72	38.19	43.86
Merged-chr16-33751729-3	chr16	33751612	33751812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-42325.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	73.09	55.84	72.45	79.23	92.46	105.36	91.35	123.14	92.84	79.33	98.49	60.77
Merged-chr7-63939127-3	chr7	63939032	63939232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-217.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	374.72	342.83	459.22	457.3	390.28	427.71	350.44	435.34	416.98	436.33	573.33	274.73
Merged-chr8-83699208-3	chr8	83699095	83699295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-16.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	26.65	19.62	24.53	19.71	26.18	19.76	21.92	18.45	42.48	34.65	45.73	23.49
Merged-chr2-144266042-3	chr2	144265919	144266119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030762)	TTS (NR_030762)	183.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	96.1	63.64	101.54	105.78	81.0	69.3	109.95	173.08	59.2	45.19	88.94	56.07
Merged-chr17-64668653-3	chr17	64668535	64668735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	66986.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	40.78	34.71	64.46	61.54	59.73	46.72	48.5	81.84	47.99	39.16	74.87	34.46
Merged-chr4-26445055-1	chr4	26444955	26445155	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2B|LINE|L1	-98403.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.81	1.51	0.0	0.8	6.55	3.14	1.99	8.61	1.97	0.0	2.01	1.25
Merged-chr1-132341915-3	chr1	132341810	132342010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25785.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	104.18	83.0	126.07	118.65	90.41	127.62	84.37	116.61	96.57	93.89	125.62	57.95
Merged-chr18-34777565-3	chr18	34777509	34777709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081256, intron 1 of 23)	CpG	601.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	14.54	21.63	11.41	17.7	19.23	25.09	23.25	20.16	23.01	22.59	30.65	16.29
Merged-chr3-121571696-3	chr3	121571589	121571789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39345.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	14.13	15.85	18.83	17.29	35.59	34.49	23.58	26.61	41.5	55.73	74.87	30.7
Merged-chr4-116597623-3	chr4	116597528	116597728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029450)	promoter-TSS (NR_029450)	2.0	NR_029450	654318.0	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	42.8	41.0	42.78	38.21	47.05	51.74	33.88	57.59	72.38	62.26	51.76	33.21
Merged-chr18-58699314-1	chr18	58699214	58699414	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	39832.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	7.27	6.79	5.13	12.07	9.0	3.45	8.97	10.77	1.18	1.0	0.5	3.13
Merged-chr2-30707495-3	chr2	30707393	30707593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13717.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	28.67	13.83	26.24	29.36	56.46	24.15	30.23	37.01	14.16	21.09	19.6	18.17
Merged-chr6-28622690-3	chr6	28622601	28622801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142353.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	29.88	21.88	23.39	36.2	40.5	33.87	37.2	50.72	35.4	22.59	50.75	19.74
Merged-chr7-16071072-3	chr7	16070968	16071168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347559)	promoter-TSS (NM_001347559)	-777.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	24.63	30.18	39.36	68.37	75.68	62.71	64.77	84.53	58.61	46.7	89.44	55.76
Merged-chr15-99029059-3	chr15	99028943	99029143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009448)	promoter-TSS (NM_009448)	-848.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	35.13	32.7	44.5	32.58	40.09	52.99	33.22	35.19	64.91	51.21	76.88	47.62
Merged-chr18-36793858-3	chr18	36793786	36793986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025594)	promoter-TSS (NM_025594)	-37.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	75.51	77.72	89.56	69.98	101.87	106.93	53.48	99.56	142.4	115.48	149.24	55.13
Merged-chr5-142367585-6	chr5	142367509	142367709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-33888.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	41.99	69.92	51.91	41.43	59.32	70.87	47.17	30.59	79.66	117.99	94.97	78.94
Merged-chr6-134172562-3	chr6	134172455	134172655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	MTD|LTR|ERVL-MaLR	136855.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	34.73	25.66	39.93	24.53	25.77	29.48	30.56	35.22	24.98	29.12	31.66	26.0
Merged-chr14-47568478-3	chr14	47568362	47568562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-28.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	49.26	51.31	40.5	62.34	61.37	74.0	38.53	62.75	106.6	113.98	112.56	54.51
Merged-chr5-32135099-3	chr5	32134998	32135198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1374.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	47.24	43.51	54.76	41.43	67.5	87.8	36.54	56.69	79.07	99.92	115.57	44.48
Merged-chr2-18955929-1	chr2	18955829	18956029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	42192.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	27.05	20.63	31.95	26.14	1.64	1.25	0.0	0.81	0.79	1.51	0.0	0.63
Merged-chr10-117224362-3	chr10	117224273	117224473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026570, exon 1 of 7)	5' UTR (NM_026570, exon 1 of 7)	134.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	56.53	62.63	60.47	82.45	47.46	74.63	72.08	51.28	58.42	103.43	72.36	41.35
Merged-chr4-88714354-3	chr4	88714251	88714451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	8157.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	38.36	20.88	54.19	29.76	57.68	26.65	38.86	89.24	46.03	47.2	69.85	36.65
Merged-chr6-146502250-3	chr6	146502155	146502355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-32.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	79.14	66.91	71.31	70.38	89.18	60.21	72.41	89.08	59.79	67.28	86.43	60.46
Merged-chr12-108760703-3	chr12	108760553	108760753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-32658.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	14.13	18.36	14.26	14.48	27.41	37.32	10.96	25.79	26.95	26.11	35.17	16.6
Merged-chr14-63119717-3	chr14	63119627	63119827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-2735.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	39.57	19.62	41.64	45.85	61.37	60.52	59.13	91.79	62.55	47.2	77.88	57.95
Merged-chrX-74297063-3	chrX	74296985	74297185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018794)	promoter-TSS (NM_018794)	-12.0	NM_001358375	54411.0	Mm.21961	NM_018794	ENSMUSG00000019087	Atp6ap1	16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383	ATPase, H+ transporting, lysosomal accessory protein 1	protein-coding	77.93	63.64	67.31	88.48	83.46	96.58	59.13	92.19	110.74	105.44	145.72	51.06
Merged-chrX-99018083-3	chrX	99017984	99018184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24497.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	60.17	56.34	70.74	92.51	58.5	58.01	45.84	56.8	51.73	48.2	76.88	43.23
Merged-chr11-87433126-3	chr11	87433031	87433231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	5540.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	85.2	75.96	111.81	94.92	90.82	90.94	42.85	82.29	92.84	96.91	115.57	57.01
Merged-chr3-95228753-3	chr3	95228657	95228857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	-80.0	NM_019914	56772.0	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	41.19	40.24	46.78	44.64	41.32	51.11	35.87	48.93	51.73	42.68	78.89	41.35
Merged-chr14-31019531-3	chr14	31019438	31019638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	-167.0	NM_001359855	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	34.73	38.48	28.52	28.96	29.86	49.23	22.59	36.5	40.91	46.19	49.75	33.21
Merged-chr12-116405316-3	chr12	116405224	116405424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-78.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	162.73	183.11	128.92	178.58	213.55	222.32	152.47	180.2	325.13	312.81	378.87	172.61
Merged-chr2-154548909-3	chr2	154548806	154549006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029305)	promoter-TSS (NM_029305)	2.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	65.01	69.42	67.31	66.77	198.01	228.59	141.5	184.82	215.96	174.73	304.5	126.25
Merged-chr6-113343923-3	chr6	113343775	113343975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133926)	promoter-TSS (NM_133926)	47.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	14.13	23.39	35.37	34.99	30.68	29.16	26.91	29.69	23.21	22.59	24.12	26.31
Merged-chr17-70746949-3	chr17	70746851	70747051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	Charlie9|DNA|hAT-Charlie	99826.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	27.05	14.34	23.96	28.56	53.59	42.96	25.91	36.39	23.8	48.2	22.61	15.35
Merged-chr19-33391788-3	chr19	33391684	33391884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167818, intron 1 of 6)	CpG	511.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	58.15	62.88	61.61	55.1	62.18	93.44	52.15	58.6	47.8	56.74	77.88	38.53
Merged-chr1-120527740-3	chr1	120527647	120527847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22723.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	44.01	35.97	50.77	20.11	25.77	37.32	39.86	15.03	76.51	72.3	110.04	31.64
Merged-chr19-11329649-3	chr19	11329566	11329766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027836, intron 2 of 6)	L1MA4|LINE|L1	5029.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	68.24	68.67	62.75	41.02	90.82	82.78	52.82	34.93	58.02	77.83	67.33	17.23
Merged-chr5-88676217-3	chr5	88676089	88676289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178700)	promoter-TSS (NM_178700)	-18.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	82.78	57.1	64.46	63.95	88.37	87.8	64.77	95.75	107.59	75.32	144.71	65.16
Merged-chr12-51691223-4	chr12	51691135	51691335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021710, exon 1 of 6)	5' UTR (NM_021710, exon 1 of 6)	269.0	NM_001329698	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	31.9	19.62	16.54	23.73	29.86	22.26	23.58	28.18	39.34	45.19	33.16	36.34
Merged-chr12-80229169-3	chr12	80229051	80229251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	31220.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	41.99	37.73	30.23	55.91	36.0	41.08	25.58	28.88	29.5	23.1	31.15	20.05
Merged-chr12-102438158-3	chr12	102438058	102438258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1655.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	33.92	25.66	70.17	52.69	37.23	43.27	63.44	71.64	70.81	48.2	127.13	64.22
Merged-chr3-109027757-3	chr3	109027629	109027829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163567)	promoter-TSS (NM_001163567)	-122.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	95.3	146.89	115.23	152.43	93.28	98.78	96.66	106.57	128.63	113.48	154.26	82.08
Merged-chr3-22077139-1	chr3	22077039	22077239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	CpG	487.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	10.09	35.21	26.24	12.07	15.55	21.95	12.95	14.69	21.24	21.09	23.62	22.87
Merged-chr7-141327688-3	chr7	141327577	141327777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	48.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	105.39	78.98	87.85	58.32	89.18	90.62	36.54	54.34	121.75	130.05	112.05	61.71
Merged-chr1-36914674-3	chr1	36914573	36914773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	24854.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	28.67	17.61	36.51	16.49	27.0	38.57	17.61	28.29	30.68	27.11	28.14	20.36
Merged-chr6-37419295-3	chr6	37419193	37419393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22855.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	23.42	28.17	29.09	51.08	31.5	30.1	36.87	36.11	29.9	36.65	46.73	29.76
Merged-chr17-70853715-3	chr17	70853624	70853824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-192.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	61.38	53.07	85.0	86.07	74.46	82.47	61.12	113.5	97.16	62.76	153.26	69.86
Merged-chr15-76538794-3	chr15	76538681	76538881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013909)	promoter-TSS (NM_013909)	-35.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	73.49	62.38	84.43	71.19	78.55	75.26	46.84	87.98	96.97	74.81	111.55	60.15
Merged-chr17-80553833-3	chr17	80553741	80553941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	9993.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	39.98	28.67	35.37	44.64	30.68	40.45	28.9	44.13	40.12	48.2	68.34	29.76
Merged-chr12-85348530-3	chr12	85348437	85348637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-9175.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	82.37	66.91	112.95	77.62	99.41	95.95	73.41	94.65	89.69	83.35	74.87	39.47
Merged-chr4-127126028-3	chr4	127125932	127126132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099319)	promoter-TSS (NM_001099319)	-11.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	32.71	28.93	36.51	20.51	47.87	28.85	18.93	30.56	47.01	58.24	39.7	30.07
Merged-chr5-3199103-3	chr5	3199014	3199214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144779.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	16.56	13.33	35.37	41.02	19.23	22.26	33.88	41.86	24.19	26.11	51.25	26.63
Merged-chr9-107555296-3	chr9	107555194	107555394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	711.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	40.78	27.92	37.65	41.02	52.77	42.96	24.91	28.32	54.88	63.27	67.33	50.75
Merged-chr11-28911327-1	chr11	28911227	28911427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146015, intron 5 of 10)	URR1A|DNA|hAT-Charlie	58122.0	NM_146015	216616.0	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	33.52	23.9	37.65	41.43	0.0	0.0	1.66	0.0	0.0	0.0	0.5	0.94
Merged-chr11-20934917-3	chr11	20934814	20935014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-103806.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	31.5	18.86	17.68	22.12	28.64	24.15	29.56	35.1	24.98	22.59	29.14	16.6
Merged-chr14-54393377-1	chr14	54393277	54393477	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	16095.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	3.23	2.52	3.42	0.8	2.86	1.25	10.3	10.57	1.18	3.01	3.01	2.19
Merged-chr4-88707311-3	chr4	88707218	88707418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15190.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	41.59	28.93	41.64	51.08	56.05	66.79	41.19	65.27	59.99	38.66	61.81	35.09
Merged-chr17-46705082-3	chr17	46704993	46705193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-67.0	NM_001357684	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	152.63	167.27	185.97	173.35	197.19	204.14	139.84	169.74	162.27	154.65	186.92	109.96
Merged-chrX-12761989-4	chrX	12761890	12762090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012005)	promoter-TSS (NM_012005)	-17.0	NM_001048208	26896.0	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	122.75	141.61	140.9	150.42	125.59	164.0	124.23	162.76	161.87	167.2	204.51	110.9
Merged-chr7-28444806-3	chr7	28444697	28444897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3860.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	94.08	51.81	91.27	76.42	119.05	96.58	78.72	79.01	89.3	97.91	122.61	64.53
Merged-chr8-4335832-3	chr8	4335729	4335929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	10619.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	54.11	30.94	42.78	58.72	65.05	52.37	59.13	82.71	81.43	69.79	75.87	43.54
Merged-chr3-88493097-3	chr3	88492994	88493194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	218.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	170.4	110.92	131.78	164.1	181.64	214.17	103.97	171.22	188.43	199.84	257.77	123.74
Merged-chr14-20794091-3	chr14	20793999	20794199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039138)	promoter-TSS (NM_001039138)	-11.0	NM_178597	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	91.26	61.88	96.41	51.48	71.18	85.29	50.49	75.62	120.96	127.03	126.12	51.69
Merged-chr6-71193374-3	chr6	71193263	71193463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6516.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	52.49	71.18	79.29	44.64	57.27	79.65	59.79	43.74	64.12	76.32	52.76	30.7
Merged-chr11-102432249-3	chr11	102432157	102432357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	1935.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	61.38	56.09	56.48	39.42	67.5	82.78	53.81	55.57	70.61	74.81	75.37	40.41
Merged-chr15-33184070-1	chr15	33183970	33184170	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	100941.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	9.69	2.52	4.56	4.42	4.5	3.76	12.29	14.19	7.87	13.05	6.03	5.01
Merged-chr13-113754838-1	chr13	113754738	113754938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-39670.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	44.82	37.73	68.45	55.5	2.45	1.25	3.32	7.54	1.97	0.0	4.02	1.88
Merged-chr5-38039277-3	chr5	38039189	38039389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	59.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	18.98	32.45	27.95	39.42	21.27	23.2	20.93	25.85	23.01	26.61	27.13	22.87
Merged-chr7-143296667-3	chr7	143296586	143296786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_001461)	promoter-TSS (NR_001461)	-139.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	64.2	63.13	77.01	55.1	73.64	93.44	52.82	78.65	105.23	102.93	113.06	62.03
Merged-chr5-18036412-3	chr5	18036325	18036525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73855.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	19.79	16.35	35.94	34.99	63.41	44.53	56.8	79.57	35.8	30.13	70.85	24.12
Merged-chr4-40854145-3	chr4	40854037	40854237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022305, exon 1 of 6)	5' UTR (NM_022305, exon 1 of 6)	400.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	159.5	173.55	207.08	165.3	172.64	299.15	156.45	158.72	232.29	290.72	298.98	178.25
Merged-chr3-130060832-3	chr3	130060742	130060942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	65.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	69.05	78.23	71.31	64.35	70.37	85.92	110.28	85.68	82.22	91.89	123.11	59.52
Merged-chr3-137848546-3	chr3	137848444	137848644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15943.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	58.95	59.36	53.62	48.67	84.68	60.21	71.42	71.83	74.35	71.8	56.78	46.05
Merged-chr19-5649666-3	chr19	5649569	5649769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	12179.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	71.88	61.88	109.53	92.51	134.6	110.38	108.29	88.71	101.29	71.8	108.03	47.62
Merged-chr15-103163373-3	chr15	103163277	103163477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-93.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	44.01	56.85	65.6	79.23	60.55	77.45	40.86	67.23	69.43	78.33	80.9	50.75
Merged-chr5-53999220-3	chr5	53999146	53999346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	723.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	20.59	16.1	12.55	24.94	17.18	16.62	13.62	13.29	20.85	17.57	21.61	14.72
Merged-chr19-23273880-3	chr19	23273770	23273970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153808)	promoter-TSS (NM_153808)	27.0	NM_153808	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	54.92	54.08	55.33	55.91	74.87	67.1	56.14	79.43	67.27	86.36	72.86	50.12
Merged-chr14-103051560-3	chr14	103051470	103051670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008392, intron 4 of 4)	intron (NM_008392, intron 4 of 4)	4558.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	31.9	29.43	23.39	26.14	36.0	37.63	13.95	45.95	47.21	47.2	78.89	40.41
Merged-chr9-52048098-3	chr9	52047988	52048188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001104617, exon 1 of 11)	5' UTR (NM_001104617, exon 1 of 11)	147.0	NM_001104617	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	34.32	34.71	31.38	37.0	25.77	26.65	37.54	27.11	47.99	40.67	47.23	23.81
Merged-chr5-73548397-3	chr5	73548303	73548503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	57377.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	60.57	70.18	54.76	108.19	77.73	55.5	44.51	77.78	56.06	55.23	87.43	55.76
Merged-chr13-49371657-3	chr13	49371532	49371732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039179, intron 2 of 6)	intron (NM_001039179, intron 2 of 6)	30083.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	26.65	25.15	38.79	29.76	42.55	33.55	27.9	48.11	33.63	35.65	46.23	30.7
Merged-chr2-38483502-3	chr2	38483375	38483575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28222.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	53.7	45.28	80.43	59.12	63.82	59.27	56.14	73.74	83.0	85.86	86.93	61.71
Merged-chr1-173419140-3	chr1	173419038	173419238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1466.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	71.88	59.11	63.32	61.13	58.5	97.83	40.52	79.26	145.94	161.18	178.88	100.56
Merged-chr17-5569787-3	chr17	5569704	5569904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77204.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	25.04	26.66	35.37	11.66	40.91	21.95	20.26	28.07	33.04	37.16	33.16	23.18
Merged-chr3-103809475-3	chr3	103809384	103809584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163552)	promoter-TSS (NM_001163552)	-33.0	NM_001163552	67489.0	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	96.91	103.38	54.19	86.47	101.05	89.05	81.38	86.64	110.54	109.96	103.01	87.71
Merged-chr9-66795578-3	chr9	66795535	66795735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-212.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	180.5	212.04	218.48	184.21	151.37	246.15	161.44	170.3	238.39	223.44	300.48	150.05
Merged-chr8-19980012-3	chr8	19979914	19980114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	CpG	250438.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	27.86	37.98	30.8	23.73	112.09	69.93	82.38	97.65	39.53	23.6	36.68	25.37
Merged-chr9-111119387-3	chr9	111119282	111119482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 1 of 13)	intron (NM_027742, intron 1 of 13)	1271.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	78.74	45.78	45.64	26.95	85.09	137.97	47.5	46.88	82.61	83.35	81.4	44.8
Merged-chr8-70744454-3	chr8	70744353	70744553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	CpG	-10226.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	25.84	19.37	30.23	24.13	23.73	37.63	42.52	46.82	16.52	23.1	32.66	13.78
Merged-chr17-31277378-3	chr17	31277270	31277470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025290)	promoter-TSS (NM_025290)	-14.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	29.07	23.9	27.38	30.57	32.32	46.72	18.93	25.51	47.99	51.72	59.8	16.6
Merged-chr6-47788528-3	chr6	47788406	47788606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15146.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	65.82	49.55	59.9	65.96	72.0	97.52	79.39	93.48	86.35	94.4	110.55	61.09
Merged-chr6-71270801-3	chr6	71270697	71270897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001354706)	promoter-TSS (NM_001354706)	-874.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	77.53	69.42	99.83	85.67	89.18	81.53	62.12	91.77	120.37	93.89	114.06	63.91
Merged-chr3-98024575-3	chr3	98024482	98024682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	11044.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	40.38	46.03	47.92	47.46	41.32	69.93	44.51	60.42	47.01	37.16	63.31	40.1
Merged-chr10-75300022-3	chr10	75299886	75300086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-16891.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	56.53	55.34	78.15	85.67	69.55	97.52	52.82	60.76	75.92	80.84	66.33	58.89
Merged-chr17-86972052-3	chr17	86971972	86972172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8961.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	60.17	53.32	47.92	45.85	92.46	68.36	56.8	85.46	80.25	74.81	74.87	36.65
Merged-chr2-91237092-3	chr2	91236994	91237194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	-28.0	NM_028119	107986.0	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	111.45	93.82	118.65	91.3	140.32	144.56	104.63	99.08	160.5	159.67	202.5	100.25
Merged-chr3-16006436-3	chr3	16006337	16006537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081687)	promoter-TSS (NM_001081687)	-105.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	80.36	59.86	74.73	111.41	112.09	96.58	94.67	128.02	90.28	55.73	105.52	63.28
Merged-chr15-89075988-3	chr15	89075892	89076092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040417)	promoter-TSS (NR_040417)	-72.0	NM_026485	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	92.07	89.54	63.89	67.57	112.09	131.7	67.76	74.47	123.72	104.44	206.52	65.79
Merged-chr17-17294354-3	chr17	17294258	17294458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324550)	promoter-TSS (NM_001324550)	-85.0	NM_001324550	100862203.0	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	110.64	99.35	93.55	130.71	105.96	100.66	105.96	63.87	151.25	130.55	173.86	103.38
Merged-chr2-14239648-3	chr2	14239546	14239746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	10232.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	16.15	11.82	14.83	25.34	30.27	26.34	23.92	28.65	20.65	20.59	29.14	11.28
Merged-chr1-39762188-3	chr1	39762066	39762266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41177.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	28.67	16.85	45.07	52.69	31.5	28.85	34.88	35.72	32.65	34.65	68.84	37.91
Merged-chrX-152336717-3	chrX	152336548	152336748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001358369)	TTS (NM_001358369)	5836.0	NM_029836	52808.0	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	47.65	64.39	59.33	65.56	74.46	70.87	80.72	72.28	84.58	77.83	116.58	53.88
Merged-chr2-170436484-3	chr2	170436389	170436589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8644.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	35.13	53.58	55.9	44.24	48.27	66.79	45.18	41.83	63.92	79.33	73.36	40.1
Merged-chr13-55445161-3	chr13	55445103	55445303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011938)	promoter-TSS (NM_011938)	-128.0	NM_001286066	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	220.47	190.16	225.9	233.68	225.42	286.61	177.05	203.78	261.99	307.79	344.2	166.66
Merged-chr1-92921002-3	chr1	92920822	92921022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181405)	TTS (NM_181405)	10097.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	11.71	21.63	22.25	30.16	29.86	24.77	24.25	33.93	26.16	32.64	34.17	22.87
Merged-chr10-118012145-3	chr10	118012039	118012239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86680.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	39.98	25.91	28.52	46.66	51.55	50.49	36.54	62.83	51.73	43.68	56.78	45.11
Merged-chr13-58458998-3	chr13	58458904	58459104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55661.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	65.41	64.14	63.89	92.91	91.64	53.93	60.12	69.28	63.53	55.73	52.26	48.87
Merged-chr12-81484975-3	chr12	81484876	81485076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132134)	promoter-TSS (NR_132134)	-125.0	NR_132134	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	50.88	63.64	78.15	99.34	63.82	69.3	97.66	71.33	69.43	86.86	89.44	48.87
Merged-chr10-44659716-3	chr10	44659601	44659801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200953.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	88.03	73.7	62.18	53.89	117.41	174.66	98.32	108.17	112.11	148.12	117.08	64.85
Merged-chr18-4354696-3	chr18	4354585	4354785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	1138.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	127.6	132.56	113.52	112.21	112.5	142.99	108.29	109.07	144.76	152.64	154.26	110.9
Merged-chr6-29468166-3	chr6	29468061	29468261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	378.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	71.07	71.43	62.75	51.48	72.0	99.09	59.46	73.09	119.78	90.88	97.98	45.42
Merged-chr9-116137021-3	chr9	116136912	116137112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	38351.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	51.69	48.04	47.35	50.68	65.05	51.43	43.85	50.16	39.53	33.64	61.81	44.17
Merged-chr10-117412835-3	chr10	117412745	117412945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	34590.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	63.4	43.26	62.18	44.24	60.55	68.05	48.83	68.58	96.57	71.8	112.56	55.45
Merged-chr8-113656339-3	chr8	113656256	113656456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001048145)	TTS (NM_001048145)	13143.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	167.98	159.72	211.64	196.27	196.37	235.18	134.86	203.41	230.13	208.88	277.37	116.22
Merged-chr8-121907767-3	chr8	121907666	121907866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033485)	promoter-TSS (NM_001033485)	-67.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	123.56	160.73	154.02	120.26	178.37	179.05	117.92	136.09	142.21	111.47	139.69	71.11
Merged-chr3-103102599-3	chr3	103102478	103102678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-24978.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	72.68	46.53	54.76	42.63	78.55	67.1	56.14	78.31	56.45	53.22	87.43	43.23
Merged-chr16-45561963-1	chr16	45561863	45562063	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198106, intron 13 of 27)	intron (NM_198106, intron 13 of 27)	26697.0	NM_198106	208169.0	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	0.0	1.01	0.0	0.0	0.0	0.0	0.33	0.0	33.44	28.12	44.22	22.24
Merged-chr1-95674231-1	chr1	95674131	95674331	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6637.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	2.02	3.77	4.56	0.4	3.68	10.35	4.65	16.99	3.54	4.52	11.05	3.76
Merged-chr16-91611421-3	chr16	91611321	91611521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7578.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	97.72	72.19	103.25	63.95	83.87	142.36	58.46	95.61	121.55	127.53	120.6	71.74
Merged-chr1-135283079-3	chr1	135282972	135283172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1012.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	31.09	22.89	46.21	38.21	15.96	23.83	26.91	25.09	34.62	14.06	29.65	29.45
Merged-chr2-156111792-3	chr2	156111616	156111816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029397, intron 1 of 2)	CpG	249.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	22.21	16.35	19.97	17.29	31.5	24.77	18.6	17.83	27.14	34.14	28.14	25.37
Merged-chr16-91385753-3	chr16	91385666	91385866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 3 of 7)	intron (NM_001347258, intron 3 of 7)	12983.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	51.69	59.36	73.02	53.49	67.5	74.32	45.18	64.68	62.55	62.26	74.87	40.1
Merged-chr2-79180908-3	chr2	79180792	79180992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74534.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	25.44	19.12	27.95	23.33	24.96	20.7	28.23	31.09	19.87	17.57	26.63	16.29
Merged-chr2-58197056-3	chr2	58196934	58197134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	33060.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	18.98	18.36	37.08	36.6	54.0	45.15	42.85	78.17	62.55	47.7	74.87	34.46
Merged-chr5-33335455-3	chr5	33335343	33335543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021500)	promoter-TSS (NM_021500)	-129.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	136.08	169.03	175.7	174.55	169.78	204.76	108.62	149.69	207.7	176.24	263.8	113.72
Merged-chr8-83693957-3	chr8	83693848	83694048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	113.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	29.48	18.11	13.12	27.75	25.36	26.65	34.21	24.11	24.98	30.13	26.63	26.0
Merged-chr11-103418729-3	chr11	103418630	103418830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6066.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	53.3	49.05	57.05	61.13	41.32	82.16	66.77	65.8	107.2	77.83	135.67	60.77
Merged-chr17-25920035-3	chr17	25919946	25920146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-332.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	268.93	270.39	277.81	257.41	341.6	392.28	257.43	282.31	373.9	416.25	449.22	257.19
Merged-chr16-24670129-5	chr16	24669999	24670199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-51756.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	25.04	24.65	15.97	19.31	18.0	25.09	26.57	12.17	26.75	25.61	17.59	15.04
Merged-chr7-64400988-2	chr7	64400887	64401087	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	8365.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	6.46	1.51	4.56	17.29	18.82	41.08	41.19	61.4	17.11	22.59	20.6	28.19
Merged-chr4-145234022-3	chr4	145233915	145234115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	12855.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	100.14	89.54	105.53	90.09	77.32	111.0	87.36	82.93	106.01	122.01	185.92	85.52
Merged-chr9-74952937-3	chr9	74952848	74953048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	68.0	NR_153342	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	96.91	91.56	86.71	97.33	84.28	91.25	84.04	72.14	120.57	108.45	177.88	73.3
Merged-chr12-111538044-3	chr12	111537969	111538169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-32.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	289.52	300.07	261.84	261.83	306.83	377.54	205.61	227.75	335.94	372.06	355.26	222.73
Merged-chr1-143916708-3	chr1	143916607	143916807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87442.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	79.55	76.46	137.48	129.91	81.82	73.38	77.06	122.08	91.46	68.29	94.97	54.2
Merged-chr2-174436423-3	chr2	174436278	174436478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	2661.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	29.07	34.71	23.39	20.51	43.36	52.37	34.21	36.76	34.42	40.17	29.14	32.58
Merged-chr2-25628039-3	chr2	25627925	25628125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-51.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	17.77	19.87	41.64	25.74	26.18	30.73	28.57	56.55	20.85	23.6	25.12	21.62
Merged-chr11-73324662-3	chr11	73324563	73324763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023113)	promoter-TSS (NM_023113)	-26.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	52.49	54.83	61.04	50.27	62.59	63.34	48.83	69.73	78.48	62.26	71.86	47.62
Merged-chr11-17258024-2	chr11	17257939	17258139	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330649, intron 1 of 4)	intron (NM_001330649, intron 1 of 4)	351.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	6.06	9.56	8.56	12.47	14.32	7.84	12.95	11.1	22.42	22.09	23.62	10.34
Merged-chr13-94358353-1	chr13	94358253	94358453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	570.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	4.04	16.1	3.42	10.86	13.09	6.9	1.66	11.13	6.88	4.52	9.55	9.4
Merged-chr10-99268461-1	chr10	99268361	99268561	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026268)	TTS (NM_026268)	5230.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	25.84	20.12	25.67	24.13	25.77	18.19	21.26	33.31	22.23	17.07	29.14	14.72
Merged-chr8-85432866-3	chr8	85432773	85432973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025722)	promoter-TSS (NM_025722)	-32.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	141.33	135.57	155.16	139.16	139.91	160.86	101.64	163.8	154.4	165.69	225.11	91.79
Merged-chr9-121374596-3	chr9	121374498	121374698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	7640.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	21.0	22.89	21.68	16.49	15.55	20.07	22.92	21.42	34.81	28.12	27.64	27.88
Merged-chr2-164936158-3	chr2	164936068	164936268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-12051.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	46.03	42.51	90.13	67.17	59.32	49.54	60.46	62.16	60.58	57.74	75.87	38.22
Merged-chr14-31385082-3	chr14	31384967	31385167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32610.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	47.65	35.47	67.31	48.67	65.05	68.67	70.09	75.22	80.45	59.75	121.1	66.41
Merged-chr1-185362994-3	chr1	185362917	185363117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029735)	promoter-TSS (NM_029735)	-27.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	168.38	142.11	169.43	123.07	161.19	218.25	127.55	140.1	211.44	202.35	237.17	143.16
Merged-chr7-80901263-3	chr7	80901169	80901369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027976)	promoter-TSS (NR_027976)	0.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	61.38	43.26	52.48	47.46	84.28	62.71	35.21	74.24	83.59	57.24	102.0	42.92
Merged-chr6-145274311-3	chr6	145274210	145274410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23758.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	52.49	28.42	96.98	58.72	70.77	81.53	97.33	117.14	94.61	77.32	109.04	63.59
Merged-chr11-114965640-3	chr11	114965549	114965749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5232.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	44.42	28.93	49.06	53.89	82.64	124.8	67.76	64.68	79.27	73.81	80.9	64.53
Merged-chr8-105340003-3	chr8	105339906	105340106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7964.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	48.05	47.79	86.14	56.71	67.5	82.16	47.5	76.01	90.87	54.23	105.02	47.3
Merged-chr5-33782840-3	chr5	33782746	33782946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-142.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	79.14	95.58	111.24	107.79	80.59	92.82	65.44	137.08	131.58	105.44	197.48	75.5
Merged-chr13-108335439-3	chr13	108335355	108335555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	19118.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	51.69	33.7	39.36	38.21	70.37	51.11	32.88	66.53	34.22	18.08	42.21	19.11
Merged-chr16-49929906-3	chr16	49929810	49930010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25920.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	32.71	26.91	9.7	22.93	29.46	44.21	32.22	25.57	42.68	53.73	55.27	28.82
Merged-chr6-65042699-3	chr6	65042591	65042791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	100.0	NM_001355249	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	40.38	58.1	40.5	67.97	54.0	64.28	77.06	60.22	69.63	69.29	79.39	51.06
Merged-chr12-119483459-3	chr12	119483355	119483555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	40045.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	29.07	18.61	23.39	19.31	20.86	14.42	21.26	18.87	47.99	30.63	28.64	24.75
Merged-chr1-88589211-2	chr1	88589117	88589317	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	37700.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	5.65	7.04	5.7	5.23	55.64	41.08	22.26	41.24	47.01	36.65	34.17	34.46
Merged-chr3-30602438-3	chr3	30602374	30602574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030557, exon 1 of 8)	5' UTR (NM_030557, exon 1 of 8)	387.0	NM_001289622	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	60.57	85.27	57.62	93.31	60.96	102.22	141.84	82.23	84.18	92.39	94.47	79.57
Merged-chr8-111052368-3	chr8	111052257	111052457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146217, intron 15 of 20)	intron (NM_146217, intron 15 of 20)	-3982.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	15.34	24.15	27.95	16.89	24.55	27.91	15.94	26.72	28.13	18.58	29.65	16.6
Merged-chr2-5769884-3	chr2	5769797	5769997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55135.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	43.61	29.18	43.35	40.22	31.09	31.67	15.94	41.97	41.11	35.65	50.25	33.21
Merged-chr4-149843112-3	chr4	149843026	149843226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-68859.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	19.38	27.92	24.53	17.7	45.82	43.59	39.2	54.08	41.5	50.21	68.34	30.39
Merged-chr6-146501586-3	chr6	146501450	146501650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	673.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	20.59	10.31	25.1	34.99	22.5	17.56	24.58	30.45	32.45	32.64	43.72	26.0
Merged-chr3-83845370-3	chr3	83845262	83845462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3754.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	116.7	99.61	128.92	78.83	134.6	165.57	97.66	124.04	148.3	152.14	133.16	98.68
Merged-chr2-145823022-3	chr2	145822931	145823131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	36915.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	22.61	21.13	46.21	48.67	25.77	36.37	39.53	46.82	44.84	26.61	61.81	18.48
Merged-chr17-78205202-1	chr17	78205102	78205302	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4954.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	7.67	5.03	7.42	4.02	1.64	4.08	10.3	7.65	5.51	9.04	8.04	3.13
Merged-chr2-45116781-1	chr2	45116681	45116881	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	661.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	9.29	8.05	13.69	6.44	5.73	15.68	5.31	3.2	18.29	21.59	16.08	11.9
Merged-chrX-102644263-3	chrX	102644157	102644357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008832)	promoter-TSS (NM_008832)	-11.0	NM_173021	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	38.36	29.68	27.38	33.38	39.27	29.48	24.25	48.08	55.27	43.18	68.84	26.63
Merged-chr17-27935253-3	chr17	27935147	27935347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	25941.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	38.76	32.95	53.05	55.1	57.68	69.61	59.13	57.59	45.43	33.64	75.87	36.34
Merged-chr3-69205808-3	chr3	69205718	69205918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	82.37	84.51	74.73	48.67	121.91	189.08	122.9	111.87	128.04	131.55	119.09	67.98
Merged-chr11-54801965-3	chr11	54801868	54802068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14265.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	53.7	55.34	39.36	64.75	46.23	51.43	37.54	52.07	68.25	62.76	72.36	34.15
Merged-chr2-23052737-3	chr2	23052619	23052819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12478.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	45.23	42.51	73.02	74.0	81.41	58.01	50.49	87.9	68.45	61.26	109.04	64.22
Merged-chr2-70871033-3	chr2	70870925	70871125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45545.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	27.86	25.91	35.94	41.02	41.32	32.93	30.56	35.07	45.04	31.13	59.8	36.65
Merged-chr12-104742471-3	chr12	104742357	104742557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	9495.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	52.49	42.76	54.19	68.78	39.27	46.72	26.24	55.51	57.63	61.26	64.82	37.59
Merged-chr10-128748456-3	chr10	128748363	128748563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	8.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	29.07	36.47	31.95	30.16	34.36	33.87	18.93	31.37	60.97	46.19	57.79	39.78
Merged-chr4-55349828-3	chr4	55349734	55349934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-208.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	274.18	293.53	265.26	282.75	314.19	358.41	298.95	303.73	356.99	403.69	462.79	239.02
Merged-chr17-35089288-3	chr17	35089202	35089402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	11.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	85.6	80.99	57.05	73.2	82.64	89.68	63.44	62.92	70.02	80.34	78.89	74.87
Merged-chr9-13827569-3	chr9	13827474	13827674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-142.0	NM_001358259	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	323.84	301.08	308.05	304.06	319.92	454.05	318.22	341.78	452.58	453.4	509.01	265.65
Merged-chr9-61706167-1	chr9	61706067	61706267	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	208343.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	8.48	7.04	5.7	12.47	10.64	14.42	3.65	9.39	12.78	5.02	12.56	4.7
Merged-chr12-100159748-3	chr12	100159668	100159868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183155)	promoter-TSS (NM_183155)	-115.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	109.43	82.75	112.38	107.39	146.46	144.56	108.29	147.95	127.26	113.48	179.89	66.1
Merged-chr8-126591269-1	chr8	126591169	126591369	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	2167.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	21.8	13.83	14.26	13.67	17.18	21.01	25.58	17.58	18.49	21.09	24.12	16.92
Merged-chr4-129049175-3	chr4	129049066	129049266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9105.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	41.19	45.02	29.66	56.31	31.09	30.73	33.55	23.92	44.84	54.23	39.7	31.33
Merged-chr1-135284042-3	chr1	135283938	135284138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145417)	promoter-TSS (NM_145417)	46.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	19.79	24.65	37.65	14.88	35.18	26.03	14.95	14.47	19.87	25.61	35.68	16.6
Merged-chr15-75086425-3	chr15	75086342	75086542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25495.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	45.63	61.62	41.07	47.06	72.82	38.26	96.0	26.83	34.62	36.15	31.15	82.39
Merged-chr1-171294851-3	chr1	171294736	171294936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025388, intron 1 of 6)	intron (NM_025388, intron 1 of 6)	166.0	NM_001360932	66155.0	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	9.29	23.14	25.1	22.52	16.77	19.76	15.61	17.02	22.23	18.08	20.1	16.29
Merged-chr15-31531100-3	chr15	31531006	31531206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-69.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	107.01	82.0	118.08	94.92	108.0	126.68	58.46	104.33	147.91	130.55	185.42	88.34
Merged-chr16-35904574-3	chr16	35904471	35904671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33189.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	38.36	17.61	36.51	37.0	29.86	34.18	29.9	48.08	41.5	34.14	70.85	37.91
Merged-chr10-10429840-3	chr10	10429757	10429957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	42457.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	49.26	38.23	41.64	56.31	17.18	47.35	32.88	41.78	73.36	36.65	57.28	30.07
Merged-chr10-86124334-3	chr10	86124227	86124427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 7 of 13)	intron (NM_013722, intron 7 of 13)	28473.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	28.67	43.26	93.55	61.13	34.36	20.07	36.54	33.59	61.37	45.69	99.49	43.86
Merged-chr4-156216771-3	chr4	156216679	156216879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172417, exon 2 of 4)	5' UTR (NM_172417, exon 2 of 4)	852.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	16.96	17.61	29.66	27.35	34.77	35.12	21.92	38.52	36.78	19.58	42.21	15.66
Merged-chr16-91562182-3	chr16	91562075	91562275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 6 of 6)	intron (NM_008338, intron 6 of 6)	15081.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	48.05	25.91	37.08	27.35	42.96	48.92	20.26	49.68	61.76	64.77	52.76	40.1
Merged-chr4-32251183-3	chr4	32251087	32251287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-166248.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	137.69	130.04	176.84	174.55	158.73	169.02	211.59	205.23	129.42	127.53	183.91	74.87
Merged-chr15-79347498-3	chr15	79347414	79347614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-6.0	NM_010755	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	69.45	66.91	63.89	49.07	49.5	116.96	43.51	38.83	105.82	102.43	80.9	55.76
Merged-chr11-21024705-3	chr11	21024599	21024799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66625.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	31.5	39.24	28.52	37.0	48.68	49.86	21.26	47.89	60.19	39.16	71.86	29.45
Merged-chr14-33185544-3	chr14	33185426	33185626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-460.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	101.76	94.07	124.36	118.65	119.87	128.56	82.71	117.84	143.78	154.15	147.73	105.57
Merged-chr5-114766630-3	chr5	114766495	114766695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077359, intron 3 of 18)	intron (NM_001077359, intron 3 of 18)	6896.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	25.44	13.33	18.25	22.12	22.91	22.58	8.3	25.96	14.55	23.1	18.59	17.86
Merged-chr10-71348518-3	chr10	71348415	71348615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	CpG	752.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	50.88	46.03	42.21	42.23	30.27	42.33	43.51	48.22	35.21	30.13	46.73	23.49
Merged-chr10-41960014-3	chr10	41959898	41960098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58384.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	29.07	16.35	17.11	18.9	25.77	17.25	13.62	23.69	21.05	24.1	18.59	12.22
Merged-chr14-103070213-3	chr14	103070136	103070336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	20.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	135.27	131.3	147.18	164.1	195.96	176.86	105.96	174.06	204.36	211.89	247.22	122.8
Merged-chr6-35133824-3	chr6	35133723	35133923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-86.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	242.68	267.12	296.07	315.73	337.51	314.51	236.17	330.87	300.74	341.43	404.5	205.19
Merged-chr1-74713118-3	chr1	74713007	74713207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-428.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	25.84	28.42	27.95	27.35	27.0	27.28	31.56	28.01	40.32	47.7	47.74	18.8
Merged-chr16-39053508-1	chr16	39053408	39053608	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135442.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.02	2.52	1.14	3.22	2.45	7.21	7.31	10.37	0.0	4.02	0.5	0.31
Merged-chrX-105079755-3	chrX	105079717	105079917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026312)	promoter-TSS (NM_026312)	61.0	NM_026312	67683.0	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	24.63	37.98	29.66	38.21	30.27	44.21	36.21	37.35	35.4	57.24	42.71	27.25
Merged-chr19-5777565-3	chr19	5777450	5777650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-6131.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	31.09	28.42	36.51	21.32	24.96	36.06	17.61	18.08	41.11	50.71	51.25	31.01
Merged-chr10-40258162-3	chr10	40258065	40258265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-453.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	31.9	30.18	43.35	43.84	29.05	24.77	21.59	21.87	28.52	32.64	49.75	14.72
Merged-chr19-46522657-3	chr19	46522578	46522778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	21030.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	75.91	62.13	100.97	91.3	93.28	87.8	78.39	86.69	96.97	85.36	128.13	72.05
Merged-chr14-30457963-3	chr14	30457851	30458051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131095)	promoter-TSS (NR_131095)	-85.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	22.21	31.19	42.78	24.94	31.5	25.09	15.28	29.83	31.27	28.12	25.12	17.86
Merged-chr10-60752831-3	chr10	60752738	60752938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-56.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	96.91	92.56	83.29	98.14	98.18	117.59	67.76	81.62	131.19	104.44	127.13	81.45
Merged-chr14-54383490-3	chr14	54383412	54383612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22671.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	57.34	43.51	79.29	63.95	52.77	69.3	79.39	103.85	43.86	35.15	59.8	36.03
Merged-chr14-17414447-3	chr14	17414353	17414553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-246507.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	43.21	33.7	47.35	55.1	63.41	52.68	69.09	71.5	65.89	54.23	61.81	37.28
Merged-chr19-59943545-3	chr19	59943439	59943639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033172)	promoter-TSS (NM_001033172)	115.0	NM_001164367	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	151.02	171.29	164.86	165.71	131.32	149.57	205.28	163.51	82.02	104.44	95.97	76.12
Merged-chr11-3266448-3	chr11	3266343	3266543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	20.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	154.65	151.92	134.06	140.37	181.64	189.71	137.85	153.17	232.88	202.35	284.41	127.81
Merged-chr1-120073898-3	chr1	120073881	120074081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-201.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	22.21	33.7	24.53	49.87	29.05	39.51	55.47	39.22	69.63	58.24	66.33	48.87
Merged-chr7-5014354-3	chr7	5014290	5014490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011813)	promoter-TSS (NM_011813)	-137.0	NM_001360242	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	25.04	41.25	14.83	32.58	37.23	32.61	18.93	27.84	59.4	55.23	82.91	31.33
Merged-chr1-87213903-3	chr1	87213800	87214000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-11.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	74.3	85.02	91.84	57.51	65.05	90.94	44.84	70.77	102.08	109.96	124.62	52.32
Merged-chr12-3894748-3	chr12	3894627	3894827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2983.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	34.73	22.64	34.8	49.87	85.91	59.58	70.09	126.48	49.17	35.65	57.28	36.65
Merged-chr4-141552612-3	chr4	141552491	141552691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6429.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	34.32	36.97	29.66	18.1	33.55	80.9	22.59	14.64	75.53	52.22	62.31	20.36
Merged-chrX-71285651-3	chrX	71285541	71285741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164192, intron 7 of 13)	intron (NM_001164192, intron 7 of 13)	70567.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	25.84	21.63	43.35	30.57	31.5	42.33	28.23	31.43	37.37	42.18	52.76	24.12
Merged-chr16-75961669-3	chr16	75961552	75961752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39132.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	70.66	71.69	60.47	47.86	79.78	129.51	73.41	54.45	98.93	91.89	117.08	35.09
Merged-chr11-48816485-3	chr11	48816393	48816593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145377, exon 1 of 6)	exon (NM_145377, exon 1 of 6)	898.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	18.57	18.86	21.68	22.12	32.32	27.59	27.57	30.31	26.16	32.64	20.6	15.66
Merged-chr12-119357484-3	chr12	119357378	119357578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85932.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	43.21	22.89	43.35	42.23	26.18	28.85	37.87	47.47	33.83	33.64	34.17	14.41
Merged-chr7-128745376-3	chr7	128745263	128745463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029982, intron 1 of 18)	L2c|LINE|L2	493.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	41.59	39.74	23.96	11.26	20.05	58.32	15.28	13.23	30.68	39.67	30.65	16.92
Merged-chr7-109519058-3	chr7	109518946	109519146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011975)	promoter-TSS (NM_011975)	-149.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	184.53	215.56	172.85	179.78	217.23	241.14	159.77	183.48	229.93	251.05	274.36	142.54
Merged-chr7-66060548-3	chr7	66060448	66060648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152094, exon 1 of 8)	non-coding (NR_152094, exon 1 of 8)	212.0	NM_021336	68981.0	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	35.53	23.64	31.38	36.6	40.09	41.08	26.24	43.46	31.67	35.65	42.21	28.19
Merged-chr12-24651227-3	chr12	24651131	24651331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-140.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	233.8	241.72	247.58	217.59	272.46	343.36	293.31	264.23	363.87	345.45	467.31	216.47
Merged-chr4-134362794-1	chr4	134362694	134362894	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355493, intron 4 of 10)	intron (NM_001355493, intron 4 of 10)	9753.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	2.42	4.02	3.42	4.42	4.09	3.76	1.0	3.14	18.29	3.51	17.08	12.22
Merged-chr11-120098828-3	chr11	120098718	120098918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	-87.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	172.02	157.71	192.24	168.12	182.87	220.76	129.21	152.94	189.41	186.28	182.9	103.69
Merged-chr8-119857985-3	chr8	119857875	119858075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4330.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	22.21	22.64	26.81	29.76	25.36	32.61	22.59	39.53	34.42	39.16	46.73	34.46
Merged-chr8-25976764-3	chr8	25976709	25976909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029884)	promoter-TSS (NM_029884)	-65.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	144.16	114.95	124.93	117.44	146.46	162.43	94.67	113.94	158.92	143.1	207.02	93.04
Merged-chr12-100426468-3	chr12	100426359	100426559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	94363.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	49.67	55.34	73.59	83.26	96.55	80.59	89.69	113.78	47.99	50.21	92.46	55.13
Merged-chr12-112675437-3	chr12	112675342	112675542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331107)	promoter-TSS (NM_001331107)	-558.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	50.07	38.48	37.65	48.67	26.59	40.45	11.29	31.63	30.29	36.65	37.69	24.12
Merged-chr10-127587882-3	chr10	127587782	127587982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33266.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	59.76	36.97	75.3	76.02	81.41	67.73	75.4	80.92	60.97	45.69	66.33	42.29
Merged-chr1-16659626-3	chr1	16659533	16659733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	2081.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	16.15	14.34	31.38	18.5	20.46	41.39	29.56	31.23	42.48	43.18	40.2	21.3
Merged-chr1-37586316-3	chr1	37586235	37586435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45319.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	103.37	104.89	108.96	76.02	113.73	84.98	69.76	80.02	102.08	102.93	76.88	57.95
Merged-chr1-86527427-3	chr1	86527317	86527517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	CpG-365	860.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	38.36	29.18	25.1	32.18	19.23	31.36	19.27	14.13	46.81	55.73	43.72	21.3
Merged-chr13-112131310-2	chr13	112131164	112131364	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157187.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.4	0.0	0.0	1.61	20.46	17.87	27.9	40.54	32.45	47.7	38.69	38.53
Merged-chrX-73911793-3	chrX	73911701	73911901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162423)	promoter-TSS (NM_001162423)	-503.0	NM_001162424	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	42.8	19.62	20.54	35.39	39.27	42.65	29.23	45.5	36.98	36.65	70.85	34.77
Merged-chr18-53229371-3	chr18	53229263	53229463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16299.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	17.36	18.36	45.64	32.18	43.77	34.81	46.17	71.97	20.26	28.62	47.74	29.76
Merged-chr5-107597622-3	chr5	107597544	107597744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163461)	promoter-TSS (NM_001163461)	-5.0	NM_001161739	170823.0	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	73.09	44.27	50.77	62.34	62.59	54.88	38.86	67.57	99.13	76.32	78.89	63.59
Merged-chr10-44381687-3	chr10	44381598	44381798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22022.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	43.21	17.86	22.25	22.52	30.68	22.26	15.61	34.37	39.73	27.11	37.69	28.82
Merged-chr15-11995299-5	chr15	11995208	11995408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011294, intron 1 of 4)	CpG	699.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	14.13	21.38	22.82	27.75	24.96	17.87	26.91	15.45	34.42	33.14	33.16	29.76
Merged-chr17-34592178-3	chr17	34592047	34592247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-324.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	17.77	10.82	14.83	25.34	21.68	12.54	7.97	19.74	24.0	27.11	22.11	12.84
Merged-chr2-167932295-3	chr2	167932202	167932402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-25.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	98.53	105.64	94.13	94.92	144.82	159.29	109.62	119.22	138.86	172.22	179.89	101.81
Merged-chr13-115210843-1	chr13	115210743	115210943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-108879.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.42	5.03	15.97	17.29	1.64	4.7	4.98	3.95	7.87	8.03	7.54	2.51
Merged-chr2-5613817-3	chr2	5613705	5613905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	62241.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	20.19	17.61	23.39	16.49	20.46	51.43	25.91	23.02	39.34	34.65	35.17	18.8
Merged-chr11-98150497-3	chr11	98150397	98150597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-881.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	37.15	25.91	22.82	22.52	40.09	45.78	19.93	25.46	46.42	43.18	38.19	25.69
Merged-chr16-24103052-3	chr16	24102955	24103155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20365.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	106.2	96.34	144.9	61.54	85.91	131.39	74.74	61.18	81.82	70.8	92.96	32.58
Merged-chr8-109868511-3	chr8	109868423	109868623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122594)	promoter-TSS (NM_001122594)	-80.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	119.93	94.07	127.78	122.27	124.78	116.34	104.63	124.04	154.99	134.56	168.33	72.99
Merged-chr8-72318965-3	chr8	72318879	72319079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008452)	promoter-TSS (NM_008452)	-83.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	248.74	222.1	318.89	319.35	274.51	308.87	247.14	277.32	387.87	392.65	560.77	254.37
Merged-chr16-11000043-3	chr16	10999947	11000147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6926.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	140.92	147.14	194.53	159.27	169.78	202.88	206.28	191.72	160.3	125.02	235.66	103.69
Merged-chr15-85859603-3	chr15	85859449	85859649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-158.0	NM_001168672	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	75.11	81.5	84.43	73.6	73.64	87.49	46.5	77.64	99.72	114.98	124.11	56.07
Merged-chr12-100396868-3	chr12	100396770	100396970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120261.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	37.55	30.43	34.8	55.91	38.86	46.72	29.9	46.32	51.53	21.59	57.79	29.45
Merged-chr5-132467218-1	chr5	132467118	132467318	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	75125.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.81	0.5	0.0	0.0	31.09	5.33	9.3	17.66	0.59	0.0	0.0	0.31
Merged-chr9-57910951-3	chr9	57910852	57911052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122873)	promoter-TSS (NM_001122873)	-34.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	35.53	45.78	47.35	59.93	45.41	46.72	29.23	43.32	50.55	53.73	79.89	41.35
Merged-chr2-180070583-3	chr2	180070423	180070623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083328)	promoter-TSS (NM_001083328)	-70.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	53.3	39.99	53.05	45.05	60.96	60.21	41.85	63.73	53.7	61.76	83.91	53.57
Merged-chr7-4239358-3	chr7	4239269	4239469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081239, intron 4 of 5)	intron (NM_001081239, intron 4 of 5)	1615.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	28.27	35.47	35.37	37.4	38.05	50.8	52.15	34.37	47.21	46.19	71.35	45.42
Merged-chr5-137631320-3	chr5	137631246	137631446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2223.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	56.94	36.72	62.75	57.11	74.05	54.56	53.15	66.36	62.15	56.74	113.06	53.88
Merged-chr5-129887427-3	chr5	129887321	129887521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024166)	promoter-TSS (NM_024166)	49.0	NM_024166	14004.0	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	119.93	116.96	152.88	141.17	127.64	153.96	125.56	131.19	209.28	211.89	222.1	112.15
Merged-chrX-75056347-1	chrX	75056247	75056447	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181584, intron 1 of 9)	intron (NM_181584, intron 1 of 9)	28558.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	1.21	0.5	2.85	6.84	2.86	3.76	8.3	12.76	5.51	0.0	7.54	9.4
Merged-chr18-36522254-3	chr18	36522144	36522344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5908.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	21.4	22.89	21.68	27.35	26.18	27.59	14.62	38.64	24.19	26.11	41.2	27.25
Merged-chr4-11191308-3	chr4	11191222	11191422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-29.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	39.98	38.74	46.78	57.51	40.09	59.58	43.18	43.99	67.27	58.75	89.44	52.63
Merged-chr8-119824258-3	chr8	119824154	119824354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	16325.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	21.0	13.83	30.23	31.77	44.18	23.2	14.95	37.71	23.8	25.61	45.22	21.93
Merged-chr10-115315562-3	chr10	115315488	115315688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	3.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	36.34	32.7	40.5	29.76	47.46	48.6	42.19	47.64	65.1	70.8	63.82	39.78
Merged-chr7-122138453-3	chr7	122138362	122138562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021608, intron 4 of 5)	intron (NM_021608, intron 4 of 5)	5421.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	38.76	20.63	32.52	33.38	35.59	21.64	32.55	32.94	29.9	39.67	33.67	25.06
Merged-chr17-29008138-3	chr17	29008032	29008232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134115)	promoter-TSS (NM_134115)	-137.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	107.41	97.09	72.45	56.71	104.32	159.92	74.07	77.86	153.42	140.59	135.67	69.55
Merged-chr7-88054410-3	chr7	88054303	88054503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-223682.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	53.7	59.36	82.15	98.94	57.68	84.66	68.76	109.21	91.85	89.37	122.1	54.82
Merged-chr13-69611640-3	chr13	69611526	69611726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-163.0	NM_175283	78925.0	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	314.56	324.97	380.49	347.1	425.47	464.71	312.91	391.4	444.71	494.57	574.34	271.29
Merged-chr16-21423160-3	chr16	21423056	21423256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285894)	promoter-TSS (NM_001285894)	38.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	62.99	42.76	45.07	71.19	89.59	79.33	41.85	68.19	89.89	100.92	101.5	57.95
Merged-chr15-79414779-3	chr15	79414689	79414889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11486.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	60.17	78.48	70.74	70.79	71.59	95.95	40.52	61.09	72.18	67.78	99.99	65.79
Merged-chr5-43788561-3	chr5	43788478	43788678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6429.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	28.67	24.15	27.38	32.18	40.91	58.01	32.55	39.98	52.12	44.69	37.69	18.8
Merged-chr2-44957390-3	chr2	44957307	44957507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65770.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	48.05	41.0	33.09	23.73	51.14	58.32	43.85	24.87	84.18	63.77	77.88	29.45
Merged-chr3-31093793-3	chr3	31093700	31093900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1258.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	159.1	152.43	173.99	149.62	170.6	215.11	109.95	137.38	213.01	224.94	263.3	109.33
Merged-chr15-38374054-3	chr15	38373970	38374170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73359.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	139.71	120.48	108.39	123.07	164.05	239.88	127.22	185.41	194.52	159.67	235.66	76.44
Merged-chr11-8589697-3	chr11	8589594	8589794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74841.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	125.58	145.63	150.6	143.18	132.14	194.1	107.62	132.31	131.78	132.05	121.1	60.77
Merged-chr2-35337080-3	chr2	35336978	35337178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-69.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	86.41	128.53	143.18	132.32	117.82	149.89	100.65	93.53	154.6	160.67	171.35	83.33
Merged-chr10-67537614-3	chr10	67537499	67537699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010118)	promoter-TSS (NM_010118)	-270.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	46.44	83.0	57.05	70.38	37.23	76.51	84.04	55.91	69.23	75.82	68.34	48.24
Merged-chr2-32260107-3	chr2	32260008	32260208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-3.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	69.05	51.31	84.43	45.05	85.5	79.96	34.55	65.83	106.41	104.94	111.55	70.17
Merged-chr4-137345966-3	chr4	137345866	137346066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009861, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	11793.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	29.88	33.2	45.07	52.29	25.77	36.37	16.61	41.38	53.7	35.65	39.7	24.75
Merged-chr15-75921563-3	chr15	75921431	75921631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	29.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	75.11	62.63	77.58	63.95	65.05	81.53	63.78	62.5	79.86	83.35	92.46	71.42
Merged-chr16-76373122-3	chr16	76373034	76373234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	-85.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	130.83	121.74	150.6	127.1	111.69	171.21	131.87	139.32	165.81	155.65	208.53	120.61
Merged-chr7-127895660-3	chr7	127895564	127895764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-47.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	131.64	93.32	95.84	95.72	111.28	128.56	84.04	112.35	143.58	101.93	161.8	88.34
Merged-chr12-57230413-3	chr12	57230303	57230503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037746)	promoter-TSS (NM_001037746)	-9.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	221.28	216.06	228.75	248.96	260.6	287.86	225.54	313.63	321.59	293.73	412.54	181.69
Merged-chr11-117829074-3	chr11	117828955	117829155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-3041.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	69.45	60.12	107.82	65.96	92.05	90.94	100.98	74.47	95.39	81.34	109.04	48.87
Merged-chr13-119835751-3	chr13	119835659	119835859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5542.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	69.45	63.39	61.04	41.43	75.68	75.26	33.88	42.76	84.18	97.91	77.88	48.87
Merged-chr6-108477173-3	chr6	108477077	108477277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-12566.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	48.46	38.23	58.19	50.68	81.41	96.27	125.89	105.59	42.48	21.59	27.64	18.17
Merged-chr4-45530889-3	chr4	45530782	45530982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-54.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	111.85	117.21	154.59	135.94	115.78	105.36	80.39	128.58	156.37	163.18	176.87	105.26
Merged-chr16-87635549-3	chr16	87635444	87635644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63410.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	31.9	28.17	24.53	14.48	51.96	56.13	34.55	27.87	42.88	38.66	28.64	17.23
Merged-chr6-88068958-3	chr6	88068851	88069051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-15522.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	30.69	15.34	16.54	28.56	21.68	27.91	18.6	37.43	28.52	27.11	31.15	18.17
Merged-chr3-135438835-1	chr3	135438735	135438935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	134.0	NM_025356	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	71.07	76.46	87.28	67.97	62.18	74.94	83.04	84.17	102.87	110.46	114.06	81.45
Merged-chr19-21737688-3	chr19	21737590	21737790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40650.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	25.44	26.91	30.23	26.95	42.55	38.88	27.24	34.01	60.58	47.7	67.33	34.46
Merged-chr10-37321384-3	chr10	37321289	37321489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-182463.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	92.47	94.57	102.68	102.16	91.64	146.75	81.71	94.18	142.8	119.5	195.97	67.98
Merged-chr17-71693438-3	chr17	71693333	71693533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20172.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	39.98	35.47	37.08	39.42	42.55	30.1	25.24	34.04	30.88	23.1	47.23	12.53
Merged-chr19-41264072-3	chr19	41263944	41264144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-40.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	67.84	68.16	71.88	62.74	76.09	69.3	49.83	69.73	80.25	113.98	92.46	49.81
Merged-chr6-86733409-3	chr6	86733319	86733519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011818)	promoter-TSS (NM_011818)	-41.0	NM_011818	23885.0	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	116.7	103.63	129.49	125.89	146.87	154.59	122.9	121.32	127.85	136.07	157.28	95.86
Merged-chr13-113382989-2	chr13	113382885	113383085	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	119859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.04	0.5	11.41	2.41	24.14	16.31	17.27	15.08	23.21	18.08	39.19	16.6
Merged-chr10-17201296-3	chr10	17201177	17201377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105495.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	35.53	24.65	58.19	44.24	58.5	51.43	30.56	66.84	47.99	48.2	44.72	25.37
Merged-chr17-83732329-3	chr17	83732219	83732419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	26156.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	105.79	83.76	118.08	150.82	132.14	111.95	100.32	148.63	125.88	107.95	181.4	71.42
Merged-chr6-89595593-3	chr6	89595502	89595702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025351)	promoter-TSS (NM_025351)	50.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	51.69	49.3	58.76	65.56	103.91	82.47	66.43	88.77	80.45	81.84	151.25	55.13
Merged-chr3-15575123-1	chr3	15575023	15575223	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-58.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	55.47	41.17	63.82	35.71
Merged-chr13-49216133-3	chr13	49216040	49216240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026738)	promoter-TSS (NM_026738)	-114.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	176.46	145.38	142.61	150.82	180.01	251.8	130.54	154.65	193.15	212.89	252.25	142.85
Merged-chr8-69902433-1	chr8	69902333	69902533	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_032004, exon 1 of 1)	exon (NM_032004, exon 1 of 1)	125.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	8.88	9.81	4.56	4.83	9.82	12.23	3.99	7.79	6.29	8.03	14.07	14.72
Merged-chr9-109017316-3	chr9	109017219	109017419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-21248.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	29.88	32.95	58.76	41.02	34.77	74.32	30.56	31.6	41.5	33.14	55.78	28.19
Merged-chr1-74392217-3	chr1	74392127	74392327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153088, intron 1 of 6)	CpG	618.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	28.67	33.96	39.36	23.73	36.0	31.98	34.88	31.49	33.63	36.65	69.85	35.09
Merged-chr7-17023973-3	chr7	17023863	17024063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	3951.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	23.82	40.24	47.92	43.84	45.82	55.82	41.85	55.93	55.27	36.15	94.47	36.65
Merged-chr6-92091431-3	chr6	92091320	92091520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	2.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	50.88	36.47	34.8	19.71	47.46	52.68	43.18	63.73	56.06	65.78	63.82	26.0
Merged-chr10-81401906-3	chr10	81401795	81401995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7680.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	56.53	36.47	46.78	43.04	70.77	74.63	50.16	62.38	74.15	67.78	111.05	60.15
Merged-chr11-20631442-3	chr11	20631334	20631534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-543.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	44.01	46.03	43.35	27.75	52.77	78.39	22.26	35.94	60.58	54.23	69.85	30.07
Merged-chr19-29806593-3	chr19	29806498	29806698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	-589.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	148.19	129.79	118.65	125.49	144.41	194.73	99.65	154.65	235.04	183.27	213.05	109.33
Merged-chr7-65650825-3	chr7	65650729	65650929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172310, intron 3 of 18)	URR1B|DNA|hAT-Charlie	5931.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	44.82	34.21	42.21	30.16	56.05	93.44	44.51	73.96	75.92	86.86	71.86	52.0
Merged-chr3-22076726-3	chr3	22076615	22076815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	63.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	55.32	53.32	88.99	66.77	66.68	48.6	45.84	75.2	114.08	86.86	136.17	72.99
Merged-chr11-73133215-3	chr11	73133109	73133309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	5085.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	38.76	40.75	38.22	29.36	28.64	43.27	12.29	37.37	50.94	38.16	25.63	32.58
Merged-chr1-134079201-3	chr1	134079107	134079307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-52.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	215.63	232.66	246.44	229.66	263.87	285.04	223.22	203.58	307.42	305.28	360.28	169.48
Merged-chr2-166327167-3	chr2	166327078	166327278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	53270.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	23.02	26.66	24.53	22.52	24.14	21.95	23.58	28.32	24.78	17.57	22.61	18.48
Merged-chr11-116274185-3	chr11	116274055	116274255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	62.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	24.23	22.89	26.24	22.52	31.5	32.61	18.6	28.49	23.8	24.6	35.17	24.12
Merged-chr14-70798774-3	chr14	70798675	70798875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	24394.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	29.07	18.11	25.1	21.72	45.82	41.39	38.2	35.36	37.57	44.69	51.25	23.81
Merged-chr9-66611838-3	chr9	66611718	66611918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18703.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	23.42	17.86	19.97	12.47	24.96	30.42	15.61	13.32	26.36	29.12	31.15	17.54
Merged-chr4-45452704-3	chr4	45452592	45452792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-43926.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	80.36	46.28	118.08	100.15	65.46	63.66	71.42	113.3	72.58	50.71	98.99	57.95
Merged-chr6-117841188-3	chr6	117841093	117841293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346652)	promoter-TSS (NM_001346652)	12.0	NM_001346651	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	43.21	28.17	34.23	28.96	52.37	35.43	25.91	51.73	44.45	39.16	60.8	27.88
Merged-chr11-101442295-3	chr11	101442218	101442418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	73.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	185.34	166.76	164.86	162.09	189.82	223.26	101.64	137.05	201.02	246.03	194.96	119.35
Merged-chr11-69580340-3	chr11	69580253	69580453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011640)	promoter-TSS (NM_011640)	-6.0	NM_011640	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	41.59	39.49	33.66	27.75	35.59	51.74	21.26	24.67	48.98	61.76	46.73	32.27
Merged-chr18-44380388-3	chr18	44380277	44380477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-123.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	235.82	229.9	200.8	257.41	240.14	339.91	243.15	276.42	288.34	255.07	349.73	182.32
Merged-chr11-94327966-3	chr11	94327882	94328082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-19.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	49.26	46.53	41.07	28.96	51.55	66.79	28.23	30.56	63.92	49.21	54.27	19.42
Merged-chr2-117018663-3	chr2	117018565	117018765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102406.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	26.25	30.94	50.77	52.69	40.09	32.93	51.15	57.9	32.26	53.22	63.82	33.83
Merged-chr4-132971748-3	chr4	132971648	132971848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2347.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	33.52	28.67	45.07	26.95	17.18	26.97	11.96	28.57	36.98	26.11	30.15	23.81
Merged-chr13-98832622-3	chr13	98832513	98832713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17164.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	106.2	104.64	115.23	158.47	120.69	136.09	109.95	120.36	135.32	128.04	169.84	112.46
Merged-chr17-28233581-3	chr17	28233485	28233685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	831.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	21.8	25.15	24.53	20.91	25.77	42.02	11.63	25.12	34.81	44.69	37.69	26.0
Merged-chr12-111538759-3	chr12	111538660	111538860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178041, intron 2 of 11)	CpG-3539	659.0	NM_173363	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	70.26	69.17	57.62	54.7	90.41	94.07	68.76	74.5	95.39	96.4	128.13	55.13
Merged-chr4-35099985-3	chr4	35099835	35100035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-52120.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	95.7	93.07	130.06	119.45	141.14	148.95	117.92	187.91	113.1	106.95	136.68	58.27
Merged-chr13-9276589-3	chr13	9276490	9276690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081426)	promoter-TSS (NM_001081426)	65.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	77.93	77.22	66.17	56.71	79.37	99.09	56.8	81.67	106.8	114.98	127.63	50.12
Merged-chr13-105377229-3	chr13	105377110	105377310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66483.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	31.9	43.77	36.51	35.8	36.82	56.76	16.94	39.45	54.48	39.67	63.31	28.51
Merged-chr2-126152076-3	chr2	126151982	126152182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	-59.0	NM_001355583	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	135.27	135.32	139.76	166.51	153.41	210.09	100.32	160.96	178.0	158.67	252.75	97.11
Merged-chr8-117157901-3	chr8	117157800	117158000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-235.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	119.93	116.21	135.2	110.6	148.91	126.68	100.32	133.88	155.19	139.59	189.94	100.87
Merged-chr4-117124542-1	chr4	117124442	117124642	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_024078, exon 2 of 7)	non-coding (NR_024078, exon 2 of 7)	1183.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	20.59	13.83	20.54	33.38	38.05	28.54	35.21	64.43	26.16	24.6	33.16	18.48
Merged-chr14-103478167-3	chr14	103478057	103478257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35184.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	50.88	64.64	75.3	106.58	79.37	70.87	71.08	95.16	67.46	48.7	83.41	51.06
Merged-chr1-174029599-1	chr1	174029499	174029699	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172648, intron 1 of 6)	intron (NM_172648, intron 1 of 6)	2156.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	1.62	3.02	1.14	0.4	17.18	19.13	4.32	12.42	5.31	5.02	5.02	5.33
Merged-chr7-79273069-3	chr7	79272967	79273167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018811)	promoter-TSS (NM_018811)	-199.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	261.26	258.32	351.4	335.84	297.42	359.04	294.3	356.02	353.45	339.93	480.88	258.13
Merged-chr2-30474275-3	chr2	30474154	30474354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030244)	promoter-TSS (NM_030244)	-55.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	33.11	24.65	10.27	27.35	38.46	42.33	24.91	27.45	53.11	40.67	47.74	20.99
Merged-chr11-93887207-3	chr11	93887115	93887315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346525, intron 2 of 17)	intron (NM_001346525, intron 2 of 17)	996.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	68.24	82.0	78.72	36.2	42.55	64.6	28.57	42.53	57.24	59.75	61.3	32.58
Merged-chr4-45448494-1	chr4	45448394	45448594	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 3 of 5)	URR1B|DNA|hAT-Charlie	-39728.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.83	0.5	0.0	0.4	0.0	0.0	0.66	0.25	24.0	18.58	28.14	14.1
Merged-chr8-115423241-3	chr8	115423141	115423341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	283653.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	56.94	59.61	64.46	43.44	92.05	106.93	58.79	63.17	112.51	92.39	113.56	64.53
Merged-chr7-38189650-3	chr7	38189551	38189751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085385, intron 2 of 3)	intron (NM_001085385, intron 2 of 3)	5864.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	112.26	135.07	230.46	110.2	128.05	100.03	91.68	67.79	69.43	60.25	72.86	30.07
Merged-chr10-39440373-3	chr10	39440272	39440472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	70573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	20.59	20.12	17.11	16.89	15.96	21.64	13.62	11.92	26.95	16.07	24.12	6.27
Merged-chr7-100964366-3	chr7	100964277	100964477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-11.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	35.13	38.74	39.93	24.94	60.96	61.46	37.2	51.67	38.75	52.22	54.77	25.69
Merged-chr1-89563633-3	chr1	89563534	89563734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108823.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	20.19	13.08	25.1	24.94	31.09	39.51	24.25	35.47	28.52	35.65	31.66	18.48
Merged-chr14-21090542-3	chr14	21090437	21090637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243041, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	14385.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	18.98	18.61	17.11	35.39	21.27	22.89	13.95	46.32	24.39	22.09	28.64	14.1
Merged-chr12-85394224-3	chr12	85394134	85394334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19517.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	28.27	24.9	50.2	39.82	55.23	37.94	36.87	56.78	44.45	40.67	52.26	39.78
Merged-chr13-5874929-3	chr13	5874824	5875024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13435.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	33.92	34.46	18.83	23.73	33.55	59.58	23.92	34.26	48.58	48.2	37.69	17.86
Merged-chr4-137357721-3	chr4	137357616	137357816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	43.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	84.8	95.08	86.14	75.21	94.91	134.21	76.73	87.73	121.75	137.07	152.75	75.18
Merged-chr13-23575751-3	chr13	23575640	23575840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-23.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	81.16	82.25	90.13	83.26	71.59	99.72	63.78	83.52	93.03	111.47	144.21	86.77
Merged-chr6-146222182-3	chr6	146222094	146222294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280029.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	62.99	53.83	75.3	73.6	53.18	80.27	77.4	112.96	68.84	38.66	73.36	42.92
Merged-chr12-52383168-3	chr12	52383067	52383267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97442.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	18.57	20.12	33.09	18.9	32.73	31.67	40.86	29.24	36.78	38.16	42.71	26.31
Merged-chr10-84622319-3	chr10	84622218	84622418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027423)	promoter-TSS (NM_027423)	-119.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	23.02	25.4	22.25	32.98	29.86	34.49	23.58	45.56	50.35	32.64	48.74	20.36
Merged-chr1-85735913-3	chr1	85735810	85736010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177055, intron 1 of 5)	intron (NM_177055, intron 1 of 5)	696.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	44.42	45.02	45.07	40.62	81.41	53.31	40.86	48.03	72.18	62.76	105.52	46.68
Merged-chr12-112648247-1	chr12	112648147	112648347	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013929, intron 3 of 3)	intron (NM_013929, intron 3 of 3)	3419.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	3.23	7.04	19.4	4.83	2.86	5.33	3.65	4.26	15.54	3.01	8.04	10.96
Merged-chr2-117386716-3	chr2	117386617	117386817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43840.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	33.52	30.18	50.77	22.12	25.36	47.66	27.9	29.64	39.53	40.67	39.7	17.23
Merged-chr9-106685851-3	chr9	106685720	106685920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011573)	promoter-TSS (NM_011573)	-4.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	43.61	75.96	41.07	51.48	50.73	62.4	32.88	32.55	71.2	64.77	52.76	47.93
Merged-chr7-110920961-3	chr7	110920851	110921051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194464, intron 10 of 20)	intron (NM_194464, intron 10 of 20)	15966.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	31.09	24.4	47.35	67.57	46.64	34.49	41.85	61.15	20.26	16.57	41.71	25.69
Merged-chr18-46535359-3	chr18	46535245	46535445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9374.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	29.07	32.2	55.33	27.35	38.46	25.4	38.2	45.73	53.5	42.68	48.74	13.78
Merged-chr10-61452920-3	chr10	61452819	61453019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-250.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	240.66	200.47	203.65	198.69	258.96	267.79	192.33	202.43	293.46	304.28	329.13	148.49
Merged-chr5-65698298-3	chr5	65698196	65698396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-440.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	44.42	48.29	34.23	26.55	49.09	48.29	22.59	34.21	53.5	47.2	47.74	32.58
Merged-chr10-13964779-3	chr10	13964685	13964885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1290.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	230.97	231.91	249.86	153.24	192.69	303.54	263.41	253.49	265.73	299.76	391.43	155.07
Merged-chr4-118135594-3	chr4	118135488	118135688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-642.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	27.05	26.16	21.68	14.88	22.09	45.15	31.22	19.32	35.8	30.63	36.18	5.95
Merged-chr1-152807768-3	chr1	152807634	152807834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010877, exon 2 of 16)	5' UTR (NM_010877, exon 2 of 16)	7581.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	74.7	77.72	43.35	83.66	93.68	91.56	63.11	94.96	95.39	115.48	107.03	61.09
Merged-chr1-9748497-3	chr1	9748392	9748592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-110.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	259.24	253.04	290.36	303.26	292.51	293.82	235.18	301.66	318.63	281.68	448.21	190.78
Merged-chr11-54438521-2	chr11	54438456	54438656	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	CpG	377.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	8.88	19.37	7.42	9.65	20.05	15.99	8.97	13.37	18.69	14.06	42.21	13.47
Merged-chr6-29985246-3	chr6	29985151	29985351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-78.0	NR_040264	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	183.73	173.55	168.28	211.15	175.91	219.19	132.54	173.89	158.73	151.64	187.93	96.49
Merged-chr8-27018583-3	chr8	27018465	27018665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-5234.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	113.87	82.5	124.93	68.78	117.41	120.41	99.65	126.65	141.81	126.03	126.12	81.45
Merged-chr8-41218093-1	chr8	41217993	41218193	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2937.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.81	0.5	0.0	0.0	0.0	0.31	0.0	0.34	36.58	42.68	62.81	22.87
Merged-chr10-39415784-3	chr10	39415674	39415874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	MIR3|SINE|MIR	45975.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	37.15	29.68	33.66	23.73	36.41	69.93	26.57	48.14	71.99	49.21	62.81	27.88
Merged-chr1-75142644-3	chr1	75142532	75142732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	79.0	NM_026977	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	65.82	76.72	51.91	88.08	71.59	73.06	113.6	69.48	82.61	94.9	106.53	73.62
Merged-chr2-122156117-3	chr2	122156017	122156217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-4583.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	27.05	33.45	22.25	30.16	22.91	38.26	25.91	26.02	46.42	51.72	41.2	24.43
Merged-chr11-53430972-4	chr11	53430906	53431106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326614)	promoter-TSS (NM_001326614)	-175.0	NM_001326614	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	111.04	125.26	95.27	90.09	120.69	153.02	66.1	76.23	208.29	176.24	164.81	103.69
Merged-chr9-30427045-3	chr9	30426932	30427132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028874)	promoter-TSS (NM_028874)	-297.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	40.78	53.07	56.48	71.19	69.55	58.95	64.77	92.55	84.97	71.3	129.64	55.76
Merged-chr4-117134030-3	chr4	117133937	117134137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-74.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	105.39	109.92	110.1	96.13	142.78	163.69	120.25	125.44	147.52	136.57	148.23	61.09
Merged-chr12-24572171-3	chr12	24572055	24572255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-132.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	204.72	197.2	224.19	215.18	233.6	252.74	204.95	304.21	304.28	257.08	435.65	178.56
Merged-chr7-126584757-3	chr7	126584617	126584817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138310)	promoter-TSS (NM_138310)	-291.0	NM_138310	171504.0	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	34.32	37.48	34.8	36.6	39.27	38.26	48.5	30.53	49.17	54.23	40.2	39.47
Merged-chr2-155074389-4	chr2	155074276	155074476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016661, exon 1 of 10)	exon (NM_016661, exon 1 of 10)	121.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	27.05	39.74	29.09	53.89	49.91	59.89	59.79	31.51	55.07	46.7	71.35	50.44
Merged-chr8-110970357-3	chr8	110970238	110970438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	27485.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	111.85	67.41	89.56	79.23	86.73	129.51	96.33	117.98	128.04	122.01	178.88	70.17
Merged-chr2-39011468-3	chr2	39011359	39011559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	3320.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	25.04	19.62	35.37	30.57	25.77	34.49	26.91	44.97	36.78	26.61	49.24	23.81
Merged-chr2-31082889-3	chr2	31082793	31082993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	13607.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	58.15	35.21	95.84	69.98	54.41	66.48	51.49	57.9	61.56	50.21	50.25	29.13
Merged-chr7-6282969-3	chr7	6282863	6283063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3617.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	19.38	15.34	17.11	21.72	14.32	22.26	18.93	19.37	42.88	24.1	22.61	17.54
Merged-chr11-78246197-3	chr11	78246083	78246283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	432.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	45.63	55.08	25.67	49.07	31.09	51.11	30.23	28.21	61.56	44.69	46.23	31.95
Merged-chr5-120503621-3	chr5	120503535	120503735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-12.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	35.13	30.43	34.8	24.13	35.18	47.04	16.94	26.47	60.19	77.32	57.28	33.21
Merged-chr13-19690200-3	chr13	19690108	19690308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181591, exon 7 of 17)	exon (NM_181591, exon 7 of 17)	7552.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	29.07	42.76	54.19	66.36	47.46	41.08	24.25	34.74	60.78	46.19	44.22	32.58
Merged-chr5-99363267-3	chr5	99363179	99363379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-110352.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	99.74	69.42	92.98	99.34	71.59	106.93	74.74	94.71	62.55	76.32	89.94	38.22
Merged-chr13-113870548-3	chr13	113870436	113870636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76028.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	62.18	53.83	53.62	78.83	65.87	73.38	59.46	124.01	126.47	74.81	149.24	66.73
Merged-chr11-62079708-3	chr11	62079617	62079817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029936, intron 1 of 12)	ERV3-16A3_LTR|LTR|ERVL	2693.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	39.57	27.92	39.93	35.39	29.05	44.53	18.93	31.71	24.39	27.11	33.67	15.04
Merged-chr2-104494601-3	chr2	104494496	104494696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145824)	promoter-TSS (NM_001145824)	-107.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	42.8	44.77	54.19	48.26	55.23	56.13	47.17	68.64	87.13	69.29	127.13	36.03
Merged-chr2-90489105-3	chr2	90489016	90489216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-9942.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	62.99	54.08	90.7	48.26	61.37	74.63	52.82	60.11	80.25	65.27	77.88	51.38
Merged-chr6-127446747-3	chr6	127446655	127446855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346513)	promoter-TSS (NM_001346513)	-85.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	26.65	35.97	26.81	24.94	24.96	29.48	16.94	31.26	57.63	55.23	39.19	29.76
Merged-chr11-103007141-3	chr11	103007047	103007247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	MIRb|SINE|MIR	-7226.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	86.82	80.99	96.98	84.86	91.64	145.5	76.73	76.04	113.49	130.05	108.03	62.65
Merged-chr17-80112846-4	chr17	80112813	80113013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14558.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	19.38	12.07	44.5	41.83	35.59	25.71	46.84	82.21	31.47	16.07	50.25	21.3
Merged-chr9-105484518-3	chr9	105484427	105484627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	L1MB7|LINE|L1	10606.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	51.28	50.56	54.19	67.57	60.55	73.38	35.87	60.48	106.8	109.46	116.07	50.12
Merged-chr10-22334190-2	chr10	22334093	22334293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	L1_Mus1|LINE|L1	27473.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	20.19	10.31	23.39	15.69	29.46	26.03	14.62	13.32	1.18	2.51	3.01	0.31
Merged-chr13-55182767-3	chr13	55182646	55182846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27036.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	21.0	19.87	18.83	13.67	21.27	26.65	21.26	13.54	47.01	80.34	58.29	41.66
Merged-chr17-28224198-3	chr17	28224096	28224296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027185, intron 7 of 10)	intron (NM_027185, intron 7 of 10)	-8558.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	33.11	32.95	19.4	34.99	35.59	30.1	18.93	30.84	56.25	27.11	39.19	18.48
Merged-chr16-55895349-3	chr16	55895262	55895462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-83.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	55.72	60.12	39.36	90.9	58.09	61.15	63.78	64.01	33.44	40.17	68.84	47.93
Merged-chr14-70545269-3	chr14	70545191	70545391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_180588)	promoter-TSS (NM_180588)	40.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	31.09	42.51	29.09	33.78	35.59	42.02	29.56	32.24	34.62	33.64	57.28	20.36
Merged-chr11-86993840-3	chr11	86993745	86993945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-83.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	54.92	54.83	34.8	53.09	73.23	63.97	46.5	47.83	66.48	61.26	81.4	37.59
Merged-chr14-30641907-3	chr14	30641802	30642002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12473.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	64.2	76.21	35.37	37.0	62.18	127.94	41.19	33.79	88.71	77.83	68.34	30.39
Merged-chr2-77946063-3	chr2	77945972	77946172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030560, intron 1 of 20)	CpG	284.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	36.75	47.04	34.8	55.1	54.0	41.71	60.79	34.71	53.7	50.71	50.75	44.48
Merged-chr8-66405939-3	chr8	66405846	66406046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	19645.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	44.42	42.76	30.23	53.89	53.59	52.05	42.52	30.0	50.55	53.73	39.7	25.06
Merged-chr9-85748923-3	chr9	85748843	85749043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175371, intron 1 of 27)	CpG	391.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	23.02	17.36	27.95	24.13	31.91	35.75	29.23	35.24	47.8	55.23	64.32	36.97
Merged-chr7-67373291-3	chr7	67373162	67373362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-404.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	79.95	80.74	54.76	68.78	63.41	86.55	46.5	64.18	92.25	89.88	102.0	34.77
Merged-chr17-78835456-3	chr17	78835356	78835556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-60.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	218.45	218.58	202.51	256.6	238.1	271.24	216.58	280.6	252.74	282.18	333.65	154.44
Merged-chr1-131974275-3	chr1	131974162	131974362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	3653.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	26.25	21.38	50.2	33.38	36.82	24.77	27.24	44.55	48.39	46.19	64.32	35.09
Merged-chr3-34081300-3	chr3	34081206	34081406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286972)	promoter-TSS (NM_001286972)	48.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	39.98	72.94	65.6	68.78	64.64	65.22	60.12	56.19	88.31	99.42	102.51	65.79
Merged-chr1-132011046-4	chr1	132010892	132011092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	3387.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	22.61	21.63	5.13	18.9	27.0	14.42	5.31	20.58	16.72	11.55	8.54	11.28
Merged-chr16-55839346-3	chr16	55839246	55839446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-705.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	69.05	75.46	79.86	47.86	71.59	122.92	56.8	51.87	91.66	123.52	105.02	46.05
Merged-chr12-55321880-2	chr12	55321772	55321972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025373, intron 3 of 6)	intron (NM_025373, intron 3 of 6)	-18872.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	41.99	42.76	35.37	24.53	14.32	28.85	18.27	10.54	8.46	3.51	5.02	1.57
Merged-chr2-154677211-3	chr2	154677122	154677322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20196.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	49.67	50.05	62.75	60.73	40.5	57.38	35.54	39.87	67.86	78.33	53.77	52.63
Merged-chr13-106947076-3	chr13	106946964	106947164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-65.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	193.42	148.9	196.81	199.09	203.32	239.88	158.11	232.18	230.52	189.8	299.98	135.33
Merged-chr10-87753723-3	chr10	87753622	87753822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104543.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	64.61	56.09	47.35	31.37	59.73	96.58	64.11	43.04	103.06	110.97	65.83	38.53
Merged-chr9-121719980-2	chr9	121719896	121720096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010918, intron 2 of 16)	CpG-15515	815.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	10.9	12.58	14.83	8.45	16.36	21.32	10.63	23.13	20.65	22.59	28.64	25.69
Merged-chr1-120532714-3	chr1	120532597	120532797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27673.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	71.07	48.54	70.17	42.23	23.32	50.17	39.86	33.87	66.68	69.29	77.38	38.53
Merged-chr4-41311334-3	chr4	41311223	41311423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	3578.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	34.73	44.77	49.06	61.54	64.23	59.58	48.5	62.64	65.3	51.72	41.71	46.05
Merged-chr2-157367007-3	chr2	157366918	157367118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	-576.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	98.93	117.21	69.03	123.07	105.55	148.95	88.36	88.91	117.23	170.72	111.05	88.65
Merged-chr5-121545971-3	chr5	121545873	121546073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-81.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	44.42	33.2	20.54	52.29	34.36	55.5	27.9	37.32	63.73	78.33	46.23	46.99
Merged-chr5-136908143-3	chr5	136908067	136908267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026073)	promoter-TSS (NM_026073)	17.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	17.77	17.1	12.55	25.74	14.32	20.38	16.28	11.86	26.16	24.1	40.7	11.9
Merged-chr2-167833728-3	chr2	167833596	167833796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98631.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	55.72	30.18	54.76	51.08	56.87	59.89	45.84	52.68	75.13	74.31	73.86	65.47
Merged-chr9-66620933-3	chr9	66620825	66621025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27810.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	27.86	35.21	29.66	14.48	27.41	50.17	18.27	17.97	36.39	34.65	24.12	20.68
Merged-chr15-101191695-3	chr15	101191582	101191782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-2187.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	112.26	94.32	99.83	53.89	139.1	165.57	82.71	78.08	151.84	171.22	131.65	71.74
Merged-chr2-32536994-3	chr2	32536895	32537095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	1636.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	35.13	44.77	53.05	45.85	58.09	49.54	38.86	54.93	32.85	38.16	47.74	37.91
Merged-chr13-55021365-3	chr13	55021285	55021485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206390)	promoter-TSS (NM_001206390)	0.0	NM_001206392	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	88.84	80.74	116.94	90.49	50.73	76.51	55.14	73.12	85.36	92.89	97.48	61.71
Merged-chr8-3481838-3	chr8	3481725	3481925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	10963.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	19.38	13.58	17.68	16.09	35.59	40.14	11.29	27.73	36.98	26.11	39.7	16.6
Merged-chr2-3332622-3	chr2	3332533	3332733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-5.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	195.44	171.04	160.87	120.26	180.41	220.76	122.24	128.69	277.72	236.49	232.65	143.16
Merged-chr8-90795520-3	chr8	90795407	90795607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33328.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	23.02	22.39	26.24	28.15	40.91	30.1	20.59	32.89	34.22	42.18	60.8	29.45
Merged-chr5-36792093-3	chr5	36791990	36792190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4664.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	18.98	13.33	23.96	22.52	27.82	20.07	13.95	24.11	23.21	28.12	36.68	19.42
Merged-chr12-4488564-3	chr12	4488442	4488642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11360.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	31.5	15.34	56.48	54.7	92.46	38.88	76.73	88.71	37.76	34.65	74.37	24.75
Merged-chr8-125528144-3	chr8	125528057	125528257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-35324.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	45.63	36.47	47.35	41.83	41.73	42.33	19.6	37.88	32.06	20.59	35.17	15.98
Merged-chr11-34054538-3	chr11	34054457	34054657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	7629.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	29.88	23.39	26.24	30.57	35.59	36.69	17.94	35.36	54.88	52.22	61.81	23.49
Merged-chr12-83922041-3	chr12	83921939	83922139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073563)	promoter-TSS (NR_073563)	-105.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	246.72	177.58	265.83	237.7	286.78	296.95	199.3	279.14	255.5	325.36	306.51	169.48
Merged-chr6-40436120-3	chr6	40436018	40436218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356375)	promoter-TSS (NM_001356375)	17.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	25.44	26.66	22.82	17.29	24.96	38.57	30.23	35.64	25.37	26.61	42.21	26.0
Merged-chr4-58540581-1	chr4	58540481	58540681	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	12712.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.83	3.27	11.41	2.82	2.45	3.76	6.98	8.27	6.69	4.02	8.04	6.27
Merged-chr1-87756372-2	chr1	87756272	87756472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029846, intron 1 of 17)	CpG	361.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	17.36	14.84	15.97	20.51	27.0	21.95	10.96	18.64	16.72	27.11	16.58	16.29
Merged-chr13-81136816-3	chr13	81136738	81136938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	167.17	151.92	189.96	216.38	168.96	187.2	169.07	185.3	235.83	192.31	236.17	170.42
Merged-chr6-87802671-3	chr6	87802566	87802766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	7091.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	18.17	19.37	29.09	22.93	14.32	20.07	13.29	19.82	34.62	17.57	23.62	15.04
Merged-chr17-55959304-5	chr17	55959238	55959438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	63.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	44.82	55.84	58.76	47.46	72.41	83.72	44.18	50.05	79.27	92.89	95.47	71.11
Merged-chr17-21008913-3	chr17	21008806	21009006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145483)	promoter-TSS (NM_145483)	-35.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	55.72	46.28	67.31	50.68	84.68	65.85	64.44	99.65	87.72	71.8	124.11	57.64
Merged-chr12-33147682-3	chr12	33147576	33147776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015602)	promoter-TSS (NR_015602)	-10.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	117.5	125.76	132.92	167.72	148.5	160.24	102.97	132.0	157.74	147.12	158.78	91.47
Merged-chr7-88271695-3	chr7	88271603	88271803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6382.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	110.64	100.61	106.68	112.21	142.37	199.12	123.24	125.5	119.59	130.05	155.77	51.38
Merged-chr13-5778364-3	chr13	5778302	5778502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	79690.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	33.11	20.12	23.96	22.93	30.68	21.32	17.27	24.08	25.18	24.1	23.62	24.43
Merged-chr3-65586466-3	chr3	65586353	65586553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57039.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	24.63	20.37	35.37	25.34	24.55	27.91	20.26	39.11	32.26	39.67	47.23	30.7
Merged-chr8-70374706-3	chr8	70374561	70374761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016685, intron 3 of 18)	CpG	1113.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	52.09	31.94	31.95	42.63	54.0	50.8	44.18	25.12	57.63	40.67	47.23	25.69
Merged-chr1-44118856-3	chr1	44118726	44118926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-53.0	NM_023645	72050.0	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	55.32	49.3	42.78	79.64	74.46	76.83	78.06	80.89	62.94	54.23	106.53	43.54
Merged-chr10-78136160-3	chr10	78136075	78136275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33593.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	63.8	76.21	59.33	30.16	57.27	90.0	60.12	20.75	116.64	111.97	137.68	32.27
Merged-chr13-55100209-3	chr13	55100045	55100245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293660, intron 1 of 12)	CpG	155.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	29.07	31.69	17.68	28.15	31.09	30.73	25.24	26.52	28.91	41.17	33.16	30.7
Merged-chr2-122377438-3	chr2	122377304	122377504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-His-CAY_|tRNA|tRNA	-8486.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	89.24	91.05	118.08	113.02	104.73	103.17	78.72	64.82	115.85	107.95	110.55	91.47
Merged-chr14-47298221-3	chr14	47298126	47298326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360542)	promoter-TSS (NM_001360542)	-48.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	41.59	57.85	36.51	51.08	52.77	65.22	37.87	49.23	72.18	62.26	102.0	52.63
Merged-chr8-90873284-3	chr8	90873186	90873386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	44451.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	54.51	51.56	67.88	74.81	47.87	79.02	68.76	98.94	36.78	34.65	38.19	41.04
Merged-chr7-101361295-3	chr7	101361191	101361391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	13222.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	40.78	35.21	34.8	25.34	39.27	44.53	34.88	41.55	42.48	41.17	47.23	26.63
Merged-chr11-113684094-3	chr11	113684009	113684209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	42.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	94.89	62.38	53.62	75.61	79.37	83.41	64.77	58.93	94.41	84.86	110.55	57.64
Merged-chr10-80148031-3	chr10	80147924	80148124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021565)	promoter-TSS (NM_021565)	-248.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	69.45	83.26	56.48	52.69	73.64	84.66	27.9	51.25	71.2	83.35	78.39	50.12
Merged-chr4-138133571-2	chr4	138133480	138133680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355700, intron 8 of 30)	intron (NM_001355700, intron 8 of 30)	4938.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	22.21	22.64	43.35	45.85	39.68	51.74	31.56	49.4	8.65	5.02	7.03	8.14
Merged-chr5-43855995-3	chr5	43855881	43856081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12828.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	77.53	68.42	158.59	119.05	76.09	63.97	146.49	128.75	96.57	59.25	101.5	53.88
Merged-chr1-69687596-3	chr1	69687497	69687697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	-1637.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	39.17	28.93	29.66	33.38	49.91	34.49	51.15	57.48	36.78	33.64	44.72	25.37
Merged-chr7-12780661-3	chr7	12780492	12780692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4934.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	35.94	29.68	18.83	39.01	40.5	44.21	42.52	35.94	24.59	32.13	40.2	23.81
Merged-chr19-10510995-3	chr19	10510877	10511077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025333, intron 3 of 3)	MLT1E2|LTR|ERVL-MaLR	14232.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	31.5	18.11	42.78	41.83	46.23	29.16	41.85	54.79	53.11	40.67	70.85	51.06
Merged-chr4-117251923-3	chr4	117251837	117252037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285812)	promoter-TSS (NM_001285812)	-14.0	NM_001285814	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	49.67	42.51	65.6	45.85	39.27	67.1	25.24	44.94	56.65	69.29	98.99	33.83
Merged-chr11-111093159-3	chr11	111093073	111093273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27009.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	44.82	31.94	32.52	32.58	50.73	39.2	26.57	41.92	73.76	58.24	66.83	48.24
Merged-chr4-30961579-1	chr4	30961479	30961679	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	296983.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.4	4.78	11.41	3.22	20.05	17.87	18.27	19.01	5.51	9.04	10.05	10.02
Merged-chr17-32788252-4	chr17	32788065	32788265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	122.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	25.04	32.45	23.39	20.91	28.64	29.48	27.24	13.99	22.62	25.61	17.59	19.11
Merged-chr14-79509104-3	chr14	79509008	79509208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6566.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	18.98	14.84	31.38	30.57	28.23	36.06	41.19	47.72	33.63	33.64	38.69	23.49
Merged-chr5-137786311-3	chr5	137786187	137786387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144913, exon 1 of 4)	5' UTR (NM_144913, exon 1 of 4)	414.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	70.66	64.14	48.49	43.04	61.37	84.66	36.21	40.51	97.56	108.45	83.91	46.36
Merged-chr2-59438599-3	chr2	59438501	59438701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46052.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	34.73	36.97	47.92	31.77	35.59	51.43	26.91	39.81	68.25	66.78	82.91	40.1
Merged-chr10-7232974-3	chr10	7232881	7233081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20744.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	54.92	48.54	93.55	87.68	42.14	43.59	50.82	69.98	40.91	41.67	86.43	36.34
Merged-chr8-41374776-3	chr8	41374681	41374881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-84.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	153.85	166.26	194.53	204.32	174.69	218.56	142.17	250.04	251.96	200.84	318.07	141.6
Merged-chr6-134897937-3	chr6	134897846	134898046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-15.0	NR_029441	72813.0	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	62.18	68.67	77.01	47.06	59.32	78.71	30.56	40.35	102.08	73.81	75.87	57.01
Merged-chr15-33083708-1	chr15	33083608	33083808	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	579.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.25	17.36	11.41	12.47	17.18	10.98	14.95	12.87	20.85	17.07	20.1	7.21
Merged-chr17-80553429-3	chr17	80553330	80553530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	10404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	17.77	14.59	9.7	8.85	25.77	32.93	14.62	31.09	38.55	28.62	26.63	18.48
Merged-chr7-46919937-3	chr7	46919819	46920019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	50.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	65.82	76.72	78.15	70.79	63.0	65.85	55.14	66.0	62.35	61.26	78.39	56.39
Merged-chr11-58330712-3	chr11	58330640	58330840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161338)	promoter-TSS (NM_001161338)	33.0	NM_001308167	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	77.12	75.71	71.88	63.55	75.68	80.27	56.14	69.34	78.48	46.7	70.85	47.93
Merged-chr11-116616015-5	chr11	116615911	116616111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8241.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	34.32	36.22	31.38	33.78	27.41	65.85	35.87	26.07	40.71	88.87	49.75	25.69
Merged-chr11-80067776-3	chr11	80067683	80067883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	13208.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	67.03	48.8	50.77	65.56	62.59	56.44	55.47	46.09	43.07	40.67	47.74	33.83
Merged-chr15-40954913-3	chr15	40954813	40955013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218788.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	30.28	20.12	27.38	30.97	54.0	39.51	35.21	67.49	52.91	58.24	70.35	35.71
Merged-chrX-102071355-3	chrX	102071261	102071461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278534)	promoter-TSS (NM_001278534)	-54.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	44.42	41.5	46.78	35.39	51.14	51.43	40.19	70.74	59.79	38.16	63.31	30.07
Merged-chr6-129234118-3	chr6	129234033	129234233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3912.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	47.65	28.93	42.78	58.32	45.41	78.39	49.83	54.28	77.89	56.74	63.82	42.6
Merged-chr17-74395548-3	chr17	74395437	74395637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-71.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	106.6	111.43	154.59	120.66	180.01	147.07	88.69	144.98	155.78	135.07	167.33	89.28
Merged-chr10-67115254-3	chr10	67115126	67115326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12032.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	27.05	38.23	20.54	14.88	13.09	29.48	16.28	18.9	18.69	15.57	28.64	15.35
Merged-chr3-59341802-3	chr3	59341697	59341897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162884, intron 1 of 6)	Lx8b|LINE|L1	2459.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	32.3	21.13	22.82	37.0	36.41	30.73	19.27	35.16	24.98	48.2	33.16	18.48
Merged-chr5-101968665-3	chr5	101968549	101968749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	101272.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	145.77	104.64	129.49	143.59	122.73	148.63	107.96	161.92	145.94	151.13	190.94	98.68
Merged-chr19-5924882-3	chr19	5924761	5924961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-45.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	68.24	50.56	74.16	47.06	65.87	93.44	40.52	45.56	67.27	50.71	101.5	34.15
Merged-chr7-97018168-3	chr7	97018071	97018271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 6 of 13)	intron (NM_153591, intron 6 of 13)	-63580.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	21.8	18.86	22.82	32.58	22.5	17.87	20.93	25.35	53.5	37.16	58.79	39.16
Merged-chr8-39642763-3	chr8	39642687	39642887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031195)	promoter-TSS (NM_031195)	-109.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	36.75	22.64	37.08	44.64	62.18	76.83	66.1	111.65	39.14	49.71	62.81	27.88
Merged-chr2-27418700-3	chr2	27418587	27418787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	8921.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	55.72	48.29	69.6	68.37	50.73	56.44	42.52	52.49	55.27	49.71	66.33	24.75
Merged-chr5-120517731-3	chr5	120517637	120517837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	6545.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	182.11	204.74	194.53	244.94	177.14	263.09	187.34	205.37	254.91	226.95	293.95	152.25
Merged-chr1-191075411-4	chr1	191075292	191075492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	HAL1|LINE|L1	12371.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	102.16	73.45	85.0	39.42	93.68	168.7	58.46	56.94	136.11	170.21	83.41	34.77
Merged-chr12-4208917-3	chr12	4208805	4209005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 16 of 21)	intron (NM_001159537, intron 16 of 21)	25060.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	59.36	50.56	54.19	46.25	65.05	74.63	37.54	50.83	60.78	72.81	48.74	24.43
Merged-chr2-45262127-3	chr2	45262024	45262224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144682.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	98.12	78.73	108.96	106.18	124.78	145.81	94.67	118.54	112.9	116.49	143.21	83.96
Merged-chr12-91534684-3	chr12	91534590	91534790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011648, intron 9 of 9)	intron (NM_011648, intron 9 of 9)	54959.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	19.38	21.88	27.95	34.19	32.73	30.1	40.52	54.81	42.09	34.65	50.25	35.09
Merged-chr8-56313803-3	chr8	56313724	56313924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	19272.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	79.95	63.13	79.86	89.69	102.28	78.39	86.03	109.99	79.27	74.81	90.45	50.75
Merged-chr14-30627547-3	chr14	30627443	30627643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	37.15	26.41	53.05	44.64	53.18	58.01	52.15	41.61	54.09	55.73	55.27	37.59
Merged-chr3-19214781-2	chr3	19214699	19214899	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26504.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.81	4.02	3.99	3.22	17.18	14.42	20.26	29.64	32.06	10.04	21.61	17.54
Merged-chr4-116464317-3	chr4	116464213	116464413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-132.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	31.5	21.63	32.52	28.56	32.73	51.11	18.6	34.74	47.99	53.73	64.32	21.93
Merged-chr11-116012682-3	chr11	116012551	116012751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	68.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	49.26	29.68	27.38	30.57	42.14	45.47	24.91	20.13	32.65	38.16	36.18	18.17
Merged-chr6-31217581-4	chr6	31217452	31217652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	922.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	21.0	18.86	27.95	22.52	12.27	31.98	17.61	22.12	41.3	22.59	35.17	34.77
Merged-chr15-26361910-2	chr15	26361814	26362014	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	52866.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	4.85	5.53	5.7	3.62	26.18	38.26	24.91	35.75	42.68	45.19	43.72	26.0
Merged-chr14-16243307-3	chr14	16243212	16243412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	19.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	120.73	110.17	104.96	116.64	140.32	164.0	100.98	129.56	166.2	188.79	171.35	109.02
Merged-chr10-58382154-3	chr10	58382066	58382266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	10712.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	29.07	42.76	33.09	52.69	17.18	41.08	33.88	41.69	38.35	12.55	26.13	18.17
Merged-chr1-155145793-3	chr1	155145695	155145895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1019.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	69.05	65.65	65.03	70.38	65.87	79.33	62.78	70.18	84.77	58.24	83.41	56.39
Merged-chr16-38458914-3	chr16	38458802	38459002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-31.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	65.82	64.14	48.49	25.74	74.05	98.46	55.14	43.68	92.05	91.89	72.36	28.51
Merged-chr7-55962455-3	chr7	55962386	55962586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023647)	promoter-TSS (NM_023647)	7.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	59.36	65.65	44.5	40.62	65.46	67.1	34.88	66.22	127.06	146.11	120.09	68.61
Merged-chr1-138125468-1	chr1	138125368	138125568	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	49658.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	12.11	6.04	5.7	7.24	16.36	18.19	3.65	12.95	13.37	6.53	8.54	5.01
Merged-chr8-117802045-3	chr8	117801934	117802134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-60.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	158.69	142.11	130.06	177.77	171.82	181.87	127.55	165.65	181.15	218.92	283.9	127.19
Merged-chr1-58712692-3	chr1	58712618	58712818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-568.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	92.47	132.56	97.55	78.83	108.41	233.93	83.04	98.66	161.09	151.64	193.46	66.41
Merged-chr1-144330500-3	chr1	144330412	144330612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81408.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	41.99	28.67	58.76	65.96	103.09	80.59	93.67	100.12	63.33	68.79	94.97	41.98
Merged-chr15-36794383-2	chr15	36794245	36794445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	193.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	43.21	33.45	18.83	26.14	42.14	33.55	32.55	39.0	45.04	39.67	72.36	22.56
Merged-chr7-66079624-3	chr7	66079532	66079732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024439)	promoter-TSS (NM_024439)	-17.0	NM_001348246	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	209.57	193.93	244.16	222.82	227.87	286.92	176.05	242.89	252.55	258.58	318.57	162.59
Merged-chr7-79811174-3	chr7	79811098	79811298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008589, exon 1 of 2)	exon (NM_008589, exon 1 of 2)	471.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	20.59	13.83	19.4	18.9	20.05	21.01	12.29	14.94	33.04	31.13	21.1	22.87
Merged-chr10-67536881-3	chr10	67536764	67536964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1005.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	16.96	14.84	15.97	14.88	13.5	16.93	14.95	15.45	22.82	25.61	29.14	23.18
Merged-chr15-103333418-3	chr15	103333314	103333514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	924.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	31.09	25.4	39.93	32.18	34.36	21.01	22.26	35.13	30.49	24.1	29.65	18.8
Merged-chr18-32376450-3	chr18	32376427	32376627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-690.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	13.33	10.56	18.25	12.87	15.96	14.42	12.29	11.19	25.96	11.55	20.1	16.29
Merged-chr10-44625780-3	chr10	44625689	44625889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167041.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	40.38	42.01	27.38	31.37	63.82	86.23	56.8	38.78	79.86	59.75	69.34	30.39
Merged-chr16-14350948-3	chr16	14350840	14351040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-10618.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	76.32	51.31	62.75	53.49	93.68	98.15	91.68	67.77	96.77	123.52	111.05	52.32
Merged-chr10-98776806-3	chr10	98776719	98776919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-137823.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	23.02	28.17	48.49	47.06	35.18	37.32	36.54	56.72	55.07	46.19	60.3	30.7
Merged-chr8-25052971-3	chr8	25052857	25053057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 9 of 11)	L1_Rod|LINE|L1	-13995.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	71.07	64.14	122.65	140.77	74.05	72.12	81.71	112.21	37.76	36.65	58.79	45.11
Merged-chr13-119631904-3	chr13	119631807	119632007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020279, intron 1 of 2)	CpG	8088.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	29.48	34.96	34.23	27.35	41.32	45.15	33.22	44.13	71.79	42.68	70.85	31.64
Merged-chr6-125041222-3	chr6	125041102	125041302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	1354.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	85.2	71.18	68.45	69.18	57.27	94.39	45.18	55.49	87.53	96.4	112.56	54.51
Merged-chr10-19915492-3	chr10	19915396	19915596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7822.0	NM_001161825	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	33.92	44.02	33.09	32.58	41.73	57.38	37.87	48.36	51.73	47.7	66.33	30.07
Merged-chr19-4943161-3	chr19	4943111	4943311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172835)	promoter-TSS (NM_172835)	-84.0	NM_001347422	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	43.21	39.74	22.25	24.53	44.59	64.91	55.14	25.35	47.21	65.78	44.72	25.06
Merged-chrX-19163192-3	chrX	19163094	19163294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16223.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	27.05	19.62	34.23	29.76	25.36	31.67	27.24	36.22	36.98	33.64	47.23	16.29
Merged-chr9-95571679-3	chr9	95571566	95571766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	11849.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	23.82	16.35	51.34	37.4	32.73	31.36	50.49	65.86	35.8	34.14	46.23	17.23
Merged-chr13-43480356-1	chr13	43480256	43480456	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	617.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	2.42	3.77	5.7	3.22	1.23	2.2	2.66	3.2	3.93	4.02	5.53	6.58
Merged-chr4-120287922-3	chr4	120287853	120288053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-692.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	25.04	32.95	30.23	37.0	21.27	43.27	15.28	25.4	31.08	33.14	51.76	26.0
Merged-chr6-71438222-3	chr6	71438103	71438303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	2434.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	45.63	32.7	28.52	57.92	40.5	47.98	51.82	51.62	34.81	22.09	47.74	26.94
Merged-chr11-83224390-3	chr11	83224281	83224481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015519, intron 2 of 3)	intron (NR_015519, intron 2 of 3)	805.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	79.95	57.35	75.87	44.24	49.91	50.17	40.52	42.76	76.12	58.24	57.79	44.8
Merged-chr17-27042963-3	chr17	27042861	27043061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13702.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	31.09	20.63	31.95	24.13	40.91	30.1	19.6	31.91	34.03	24.6	43.21	25.69
Merged-chrM-16103-2	chrM	16025	16225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											44609.32	35111.04	48771.76	44887.5	40968.44	48980.39	49548.61	57309.45	0.0	0.0	0.0	0.0
Merged-chrX-167435065-3	chrX	167434952	167435152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52303.0	NM_001313758	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	45.23	30.43	43.35	46.25	48.27	56.13	48.5	48.42	40.52	27.62	56.28	30.07
Merged-chr6-31356657-3	chr6	31356531	31356731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42142.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	86.82	67.16	116.37	108.59	115.37	138.29	130.88	130.88	122.34	99.42	135.67	89.59
Merged-chr7-126773527-1	chr7	126773427	126773627	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024228, intron 9 of 9)	ORR1A4|LTR|ERVL-MaLR	-3448.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.81	0.5	2.28	0.0	19.23	43.59	15.28	25.85	1.77	1.51	1.0	2.19
Merged-chr14-76755720-1	chr14	76755620	76755820	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4411.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0.0	1.26	0.0	0.4	3.68	8.78	4.98	1.32	112.9	103.43	121.1	38.85
Merged-chr12-110447016-3	chr12	110446939	110447139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-140.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	56.13	62.63	96.98	44.24	99.0	102.54	38.86	58.88	123.72	99.92	153.76	51.06
Merged-chr11-79017437-3	chr11	79017299	79017499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 17 of 17)	intron (NM_013571, intron 17 of 17)	-6198.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	18.17	20.37	19.97	24.13	20.86	49.86	37.2	22.57	24.78	29.12	30.15	19.74
Merged-chr5-135573167-3	chr5	135573064	135573264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019577)	promoter-TSS (NM_019577)	-115.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	81.57	55.59	119.8	111.01	105.96	94.7	117.59	99.31	90.87	96.4	125.62	59.52
Merged-chr19-57273031-3	chr19	57272929	57273129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-931.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	21.0	22.89	22.25	26.55	29.05	22.58	20.93	33.36	18.69	16.57	25.12	18.48
Merged-chr10-59879950-2	chr10	59879862	59880062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	CpG	371.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	16.96	21.88	32.52	40.62	26.59	23.2	29.56	16.29	36.58	59.75	50.75	31.64
Merged-chr8-122928984-3	chr8	122928880	122929080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	80606.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	41.59	25.66	31.95	48.26	54.0	28.85	17.61	34.49	37.96	41.67	33.16	19.74
Merged-chr11-59662442-3	chr11	59662355	59662555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-40.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	47.24	34.71	42.78	39.42	57.68	41.39	28.23	42.81	67.27	42.68	84.42	30.7
Merged-chr4-149518127-3	chr4	149518022	149518222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023465)	promoter-TSS (NM_023465)	-119.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	167.58	161.98	173.99	123.07	155.05	255.56	129.88	141.11	202.39	187.79	223.1	111.84
Merged-chr3-142560554-3	chr3	142560519	142560719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289493, exon 1 of 11)	5' UTR (NM_001289493, exon 1 of 11)	263.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	81.97	83.51	62.18	100.55	87.96	98.78	82.38	67.35	63.53	67.28	72.36	37.59
Merged-chr3-119782618-1	chr3	119782518	119782718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310711, intron 1 of 13)	CpG	770.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	6.86	16.6	21.11	11.26	11.86	12.54	24.91	16.23	17.31	16.57	14.07	21.62
Merged-chr6-57581403-3	chr6	57581307	57581507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025992, intron 1 of 22)	intron (NM_025992, intron 1 of 22)	415.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	45.63	75.21	51.34	68.78	62.18	67.42	29.23	51.65	105.82	87.87	81.9	51.69
Merged-chr7-18991136-3	chr7	18991037	18991237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145579)	promoter-TSS (NM_145579)	-108.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	60.57	74.7	77.58	65.16	74.87	91.25	59.13	53.47	78.28	140.09	106.53	68.92
Merged-chr2-98663831-3	chr2	98663729	98663929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1196172.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	58.15	48.8	55.33	51.08	58.09	36.06	76.73	136.32	33.24	44.19	42.21	54.82
Merged-chr10-122894744-3	chr10	122894645	122894845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90979.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	19.79	22.64	36.51	34.19	36.82	71.49	47.17	51.67	26.55	16.07	34.67	20.36
Merged-chr17-31038568-3	chr17	31038479	31038679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19115.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	58.95	43.26	83.29	70.38	131.32	122.92	120.58	141.25	75.92	50.21	65.83	44.48
Merged-chr9-60847195-1	chr9	60847095	60847295	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 3 of 19)	RSINE1|SINE|B4	52753.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.81	1.51	2.28	0.8	4.91	0.31	10.3	14.69	0.2	0.5	0.0	2.19
Merged-chr9-78532665-3	chr9	78532550	78532750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50926.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	35.94	25.91	27.38	29.76	51.96	40.14	24.25	48.62	48.98	44.19	48.24	47.93
Merged-chr8-57541597-3	chr8	57541477	57541677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29734.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	37.96	27.92	34.8	30.16	42.55	36.06	31.56	55.09	35.8	28.62	54.77	24.43
Merged-chr11-51619624-3	chr11	51619538	51619738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-135.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	168.38	176.57	163.15	135.94	157.5	215.11	82.05	101.8	234.85	286.7	199.49	124.99
Merged-chr12-85593169-3	chr12	85593051	85593251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-5954.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	48.05	50.81	82.15	53.89	54.82	65.85	28.57	45.59	71.79	74.81	72.36	49.18
Merged-chr3-138442760-1	chr3	138442660	138442860	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-333.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	40.38	26.41	30.23	24.53	45.0	59.58	34.55	30.9	56.45	59.25	64.82	29.45
Merged-chr6-17693990-2	chr6	17693902	17694102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289626)	promoter-TSS (NM_001289626)	8.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	26.65	12.58	17.11	14.48	26.59	31.36	33.22	26.36	24.98	26.11	25.12	16.92
Merged-chrM-11739-2	chrM	11609	11809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											49889.76	48974.0	52553.89	57691.53	43277.01	52788.73	52648.76	55869.36	0.0	0.0	0.0	0.0
Merged-chr7-16309471-3	chr7	16309341	16309541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-142.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	104.18	129.03	92.41	47.86	105.14	188.46	56.47	74.92	148.11	169.71	141.2	66.1
Merged-chr11-76628821-3	chr11	76628736	76628936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43634.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	33.92	32.2	70.74	44.24	29.86	40.45	38.2	45.98	35.8	32.64	60.3	36.34
Merged-chr12-3427583-4	chr12	3427469	3427669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	712.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	32.3	28.93	17.11	17.7	22.91	31.36	10.96	22.21	43.47	39.16	63.31	35.71
Merged-chr4-43260345-2	chr4	43260247	43260447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-6812.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	29.48	20.63	51.34	30.97	17.18	21.95	16.28	30.42	0.79	0.0	0.5	1.25
Merged-chr14-64440684-3	chr14	64440616	64440816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026322, exon 6 of 11)	exon (NM_026322, exon 6 of 11)	310.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	33.92	60.62	50.77	72.8	47.87	50.49	65.44	47.55	53.3	68.79	77.88	46.68
Merged-chr15-100461880-3	chr15	100461781	100461981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7130.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	83.18	73.95	86.71	74.81	106.37	95.95	64.11	63.22	127.26	151.13	133.16	72.36
Merged-chr19-6141051-3	chr19	6140949	6141149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	88.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	64.61	63.89	54.19	40.62	56.05	78.39	46.84	37.21	55.07	70.8	42.71	36.03
Merged-chr3-58576723-3	chr3	58576694	58576894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001040396, exon 1 of 6)	exon (NM_001040396, exon 1 of 6)	158.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	34.32	24.15	18.25	30.16	24.14	13.8	29.9	22.4	26.75	40.67	38.69	21.93
Merged-chr4-115830730-3	chr4	115830635	115830835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	2643.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	62.99	82.5	45.64	40.62	47.46	103.48	67.1	23.47	63.92	87.87	43.21	33.52
Merged-chr5-34543290-3	chr5	34543168	34543368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-97.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	65.41	69.17	59.9	88.08	53.59	64.28	63.11	61.07	45.24	41.67	75.37	33.83
Merged-chr2-136891534-3	chr2	136891461	136891661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-33.0	NR_149746	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	232.59	208.01	216.2	189.44	217.23	287.86	183.36	269.92	329.65	271.64	376.36	182.63
Merged-chr5-141084928-3	chr5	141084807	141085007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84311.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	26.25	29.68	36.51	24.53	42.96	34.18	12.29	35.64	49.57	60.75	45.22	29.13
Merged-chr4-152297195-3	chr4	152297095	152297295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037908)	promoter-TSS (NR_037908)	-19.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	222.9	221.85	197.38	223.62	266.33	280.02	176.71	206.36	257.46	260.59	308.02	172.92
Merged-chr7-126429043-3	chr7	126428944	126429144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030566, exon 1 of 13)	5' UTR (NM_030566, exon 1 of 13)	277.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	39.57	25.15	16.54	19.71	31.91	39.51	13.29	42.11	57.63	61.26	74.37	47.3
Merged-chr17-34174271-3	chr17	34174158	34174358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13072.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	29.48	32.7	16.54	12.87	18.0	29.79	12.62	12.59	59.6	41.17	37.18	31.33
Merged-chr6-82773552-3	chr6	82773439	82773639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	CpG	915.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	44.82	45.02	40.5	27.35	32.32	57.07	53.48	51.36	82.61	51.21	56.78	25.06
Merged-chrX-136245079-3	chrX	136244963	136245163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011712)	promoter-TSS (NM_011712)	-17.0	NM_011712	22381.0	Mm.512	NM_011712	ENSMUSG00000042712	Tceal9	AL024233|Wbp5	transcription elongation factor A like 9	protein-coding	30.28	22.39	24.53	14.08	39.27	40.45	23.25	42.06	45.24	38.66	63.31	36.65
Merged-chr5-29784989-3	chr5	29784903	29785103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037940, intron 9 of 9)	intron (NM_001037940, intron 9 of 9)	-49067.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	32.71	16.6	35.94	32.58	31.09	29.16	31.22	30.34	25.18	21.09	27.13	21.3
Merged-chr7-6155640-3	chr7	6155553	6155753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	CpG	318.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	61.38	67.16	64.46	65.56	80.18	82.78	53.15	82.09	121.55	109.96	134.16	93.35
Merged-chr2-165949846-3	chr2	165949758	165949958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42779.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	45.63	33.7	58.76	47.86	57.27	63.34	55.47	52.68	62.35	62.26	73.36	36.97
Merged-chrX-7765978-3	chrX	7765867	7766067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271489, intron 2 of 9)	intron (NM_001271489, intron 2 of 9)	1926.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	24.23	17.86	23.96	19.71	49.5	52.05	34.21	35.94	29.31	20.59	32.16	19.42
Merged-chr1-171631669-3	chr1	171631557	171631757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144539)	TTS (NM_144539)	10243.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	72.28	60.37	97.55	67.57	81.0	74.0	64.11	89.64	96.97	98.41	143.71	65.16
Merged-chr17-28180953-3	chr17	28180837	28181037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3519.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	42.8	42.01	45.64	42.23	59.73	70.87	37.2	59.89	68.45	73.81	94.47	41.35
Merged-chr4-117892014-3	chr4	117891903	117892103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026344)	promoter-TSS (NM_026344)	0.0	NM_026344	67728.0	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	28.27	24.65	23.96	30.16	32.32	31.36	28.23	35.92	46.03	41.67	57.79	21.62
Merged-chr16-4877365-3	chr16	4877277	4877477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	2474.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	60.57	46.03	76.44	62.74	64.64	54.56	35.87	65.94	83.0	55.23	103.01	66.41
Merged-chr15-38284059-3	chr15	38283965	38284165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15835.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	18.57	23.64	25.67	24.13	22.91	29.48	20.26	22.09	31.86	16.07	35.68	13.78
Merged-chr12-84034254-3	chr12	84034152	84034352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-4127.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	22.61	18.11	25.67	24.94	20.05	40.45	20.26	31.93	25.18	27.62	32.66	23.49
Merged-chr12-111456053-3	chr12	111455970	111456170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13409.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	38.36	44.52	32.52	20.11	38.05	92.19	46.17	31.46	43.07	87.37	32.16	29.45
Merged-chr13-55635022-3	chr13	55634993	55635193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282055)	promoter-TSS (NM_001282055)	94.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	13.73	19.62	11.41	15.69	14.73	21.95	17.94	11.52	19.87	16.07	21.61	16.6
Merged-chr16-31947457-3	chr16	31947356	31947556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027897, exon 1 of 1)	non-coding (NR_027897, exon 1 of 1)	1065.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	35.94	26.91	34.23	43.84	52.77	48.92	44.18	44.61	38.94	35.65	59.29	47.62
Merged-chr13-12569926-3	chr13	12569812	12570012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	4029.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	29.48	31.69	24.53	39.01	52.37	48.6	52.48	67.88	68.25	57.24	75.37	55.76
Merged-chr16-20372258-3	chr16	20372123	20372323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-46819.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	60.17	53.07	66.17	41.02	42.55	49.23	47.5	43.04	77.89	54.73	55.78	40.1
Merged-chr19-3905556-5	chr19	3905472	3905672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016921)	promoter-TSS (NM_016921)	-342.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	24.23	29.93	23.39	28.56	25.36	35.12	34.55	18.53	27.34	28.62	35.17	22.56
Merged-chr4-124850675-3	chr4	124850550	124850750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	80.0	NM_001142727	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	79.14	73.19	81.58	114.22	65.46	92.5	59.79	65.27	91.07	108.96	104.01	58.89
Merged-chr14-75181739-3	chr14	75181631	75181831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	45306.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	24.23	28.17	38.79	30.16	46.23	48.92	20.26	34.4	34.03	23.1	43.21	23.49
Merged-chr9-86696001-1	chr9	86695901	86696101	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008615)	promoter-TSS (NM_008615)	-87.0	NM_008615	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	4.85	6.79	6.85	6.03	16.36	16.93	11.29	16.18	2.16	5.02	3.52	5.95
Merged-chr4-154011800-3	chr4	154011725	154011925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	22.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	27.05	35.21	39.36	51.88	51.55	41.39	39.53	49.26	49.37	44.69	72.86	26.94
Merged-chr1-39936688-3	chr1	39936593	39936793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	35780.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	54.92	52.07	71.31	61.54	40.91	57.7	41.85	59.41	64.71	56.24	78.89	43.54
Merged-chr5-96162645-3	chr5	96162547	96162747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-657.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	35.53	30.18	47.35	48.67	42.14	56.76	53.48	60.25	69.04	57.24	67.84	40.41
Merged-chr13-75707975-3	chr13	75707850	75708050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	CpG	466.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	52.9	60.62	26.24	40.22	47.87	83.1	46.17	37.4	69.23	79.33	79.39	32.27
Merged-chr15-93398364-3	chr15	93398253	93398453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	3.0	NM_175363	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	67.84	52.57	50.77	46.25	43.36	72.12	31.89	50.22	109.16	94.9	147.23	67.04
Merged-chr13-58157658-3	chr13	58157544	58157744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048060)	promoter-TSS (NM_001048060)	-5.0	NM_001048060	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	60.97	30.94	40.5	42.63	49.5	54.88	27.57	48.79	59.79	68.79	84.42	53.26
Merged-chr18-70531486-3	chr18	70531387	70531587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1166.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	29.48	23.14	21.68	13.67	23.73	28.54	12.95	12.7	60.78	53.73	61.3	19.42
Merged-chr2-150837053-1	chr2	150836953	150837153	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	5517.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	1.62	1.26	5.7	14.48	17.18	3.76	18.93	39.48	4.52	5.02	4.52	3.45
Merged-chr4-136602767-3	chr4	136602680	136602880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347221)	promoter-TSS (NM_001347221)	-57.0	NM_001347221	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	69.45	56.59	58.19	58.32	63.0	63.03	35.21	36.0	44.45	55.73	66.33	39.47
Merged-chr17-81712616-3	chr17	81712528	81712728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	25759.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	50.47	32.45	29.66	54.3	41.32	35.43	36.21	47.27	43.47	59.25	51.76	38.53
Merged-chr10-59265826-3	chr10	59265718	59265918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43896.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	67.43	70.43	90.13	87.68	81.0	99.72	46.84	95.89	95.39	95.4	99.99	44.17
Merged-chr13-20508718-1	chr13	20508618	20508818	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35728.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.42	1.76	2.85	6.44	3.68	2.82	6.98	7.68	0.98	0.0	0.0	0.0
Merged-chr11-58847139-3	chr11	58847030	58847230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6014.0	NM_146537	258530.0	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	71.47	39.99	81.58	61.13	60.96	86.86	54.48	56.22	117.23	89.37	120.6	47.93
Merged-chr6-108555095-3	chr6	108554994	108555194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65351.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	16.15	16.35	35.37	24.94	31.91	23.52	33.55	47.38	34.62	19.58	27.13	19.11
Merged-chr19-12798655-3	chr19	12798603	12798803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	124.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	32.3	29.68	50.77	46.25	38.46	48.92	35.21	29.44	17.31	17.07	20.6	14.72
Merged-chr2-151536866-3	chr2	151536780	151536980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5603.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	21.4	30.18	35.94	49.47	56.05	47.04	85.7	68.08	65.5	95.9	90.95	49.18
Merged-chr7-92876790-3	chr7	92876701	92876901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	1548.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	14.13	12.83	26.81	16.89	17.59	26.03	12.95	18.79	35.4	23.1	40.2	16.92
Merged-chr19-5850375-3	chr19	5850264	5850464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026169)	TTS (NM_026169)	-4884.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	22.61	18.86	34.8	17.29	29.05	24.46	16.61	13.79	39.14	40.17	33.16	29.13
Merged-chr8-35495065-3	chr8	35494932	35495132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026067, intron 1 of 6)	CpG	501.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	26.25	42.26	33.09	39.42	27.41	42.02	29.56	28.01	35.99	48.2	56.28	40.1
Merged-chr16-85099243-3	chr16	85099131	85099331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	74476.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	35.13	46.53	78.72	67.97	41.32	59.89	45.51	81.39	41.89	37.16	75.87	41.98
Merged-chr14-50931049-3	chr14	50930940	50931140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-191.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	255.2	252.53	238.45	223.22	299.46	307.3	210.93	267.87	387.08	365.03	379.37	188.59
Merged-chr8-11007255-3	chr8	11007171	11007371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046017)	promoter-TSS (NR_046017)	-579.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	33.52	48.54	41.64	55.91	54.82	53.93	70.75	73.57	39.34	33.64	40.2	32.58
Merged-chr5-99345475-3	chr5	99345341	99345541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-92514.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	72.68	54.83	98.12	84.86	75.68	72.44	87.69	87.28	67.27	47.2	90.95	36.34
Merged-chr15-55112336-3	chr15	55112232	55112432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145470)	promoter-TSS (NM_145470)	15.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	84.8	100.61	63.89	83.26	125.19	159.29	77.4	142.91	126.47	122.51	160.29	77.38
Merged-chr3-149083649-2	chr3	149083538	149083738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129003.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	7.27	13.58	23.39	15.28	27.41	23.52	32.22	38.07	7.28	5.02	6.03	6.89
Merged-chrX-71492744-3	chrX	71492642	71492842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_138309, exon 1 of 9)	5' UTR (NM_138309, exon 1 of 9)	107.0	NM_138309	171486.0	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	21.4	34.21	42.21	34.99	54.0	43.59	57.47	58.18	51.73	33.14	57.79	17.23
Merged-chr14-25472708-3	chr14	25472622	25472822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	13537.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	56.53	51.81	41.64	35.39	43.36	53.31	23.58	45.17	59.2	57.74	57.79	39.47
Merged-chr15-31331948-3	chr15	31331863	31332063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	35796.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	28.27	25.66	37.08	17.29	51.96	45.78	60.79	59.24	42.88	37.66	58.79	31.95
Merged-chr9-107975447-3	chr9	107975328	107975528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-139.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	35.13	41.75	49.63	51.08	42.96	57.07	50.82	54.17	64.32	51.21	88.94	38.85
Merged-chr17-74295182-5	chr17	74295075	74295275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133771)	promoter-TSS (NM_133771)	-312.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	18.98	12.83	18.83	6.84	21.68	27.28	8.3	19.51	39.73	62.76	66.33	16.6
Merged-chr2-37703401-3	chr2	37703290	37703490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15106.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	41.99	30.18	27.95	44.24	63.41	48.6	33.55	44.86	68.84	61.26	67.33	35.71
Merged-chr13-111808962-1	chr13	111808862	111809062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	31.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	18.57	28.42	29.66	11.26	14.73	17.87	13.29	17.33	27.73	13.56	31.66	15.66
Merged-chr13-46669484-3	chr13	46669385	46669585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-37.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	35.94	20.12	17.68	23.33	32.73	29.48	16.61	19.57	39.14	31.13	55.78	22.56
Merged-chr5-124492765-3	chr5	124492682	124492882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021430)	TTS (NM_021430)	9627.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	115.49	128.03	119.23	97.33	95.73	162.43	97.33	140.5	157.35	127.53	209.03	107.76
Merged-chr2-79653721-3	chr2	79653632	79653832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080558, intron 9 of 17)	intron (NM_080558, intron 9 of 17)	18307.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	87.22	51.81	75.3	105.38	86.73	42.02	99.32	132.65	95.2	68.29	144.21	91.79
Merged-chr15-51877412-3	chr15	51877329	51877529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-12.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	88.84	91.05	102.11	121.46	128.46	139.54	93.01	143.78	150.86	130.55	177.38	89.59
Merged-chr2-57124195-3	chr2	57124090	57124290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139509)	promoter-TSS (NM_001139509)	-187.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	40.38	51.31	66.74	97.33	92.05	103.79	88.36	136.09	124.11	94.4	215.06	96.49
Merged-chr11-6389156-3	chr11	6389047	6389247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5978.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	114.68	126.27	95.27	131.92	118.23	173.09	138.85	127.63	130.8	132.05	188.93	92.73
Merged-chr16-49854315-3	chr16	49854212	49854412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	57.74	56.85	67.88	74.41	80.18	72.75	78.06	106.77	93.03	86.86	128.64	42.92
Merged-chr3-87961037-3	chr3	87960940	87961140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10053.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	47.24	36.22	29.09	35.8	35.59	41.39	37.2	35.66	32.65	35.65	44.72	19.42
Merged-chr1-64199045-3	chr1	64198937	64199137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77648.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	18.57	23.39	48.49	31.37	38.86	28.85	19.93	38.22	43.27	51.21	44.72	31.95
Merged-chr1-39969229-3	chr1	39969130	39969330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 3 of 29)	intron (NM_001252202, intron 3 of 29)	68317.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	21.4	20.63	28.52	32.58	24.55	21.64	20.59	39.67	42.09	25.11	36.68	20.36
Merged-chr17-65613774-6	chr17	65613664	65613864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-209.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	79.14	97.84	77.01	102.56	75.68	112.89	104.63	69.62	102.47	118.5	161.3	92.73
Merged-chr4-97772311-3	chr4	97772199	97772399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	CpG	-5327.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	199.88	171.29	197.38	217.59	222.96	238.94	202.62	252.06	256.09	249.04	353.75	131.89
Merged-chr15-10887625-3	chr15	10887534	10887734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58583.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	25.84	15.85	49.63	36.2	33.96	34.81	39.2	48.9	33.44	40.67	67.33	25.69
Merged-chr15-102399741-3	chr15	102399621	102399821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6595.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	43.21	24.9	28.52	33.78	44.18	36.37	29.9	31.29	46.03	61.76	78.39	41.98
Merged-chr10-127288479-2	chr10	127288373	127288573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	545.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	30.69	23.9	19.4	18.1	19.64	28.85	22.26	25.82	29.9	22.59	37.18	34.15
Merged-chr6-38690770-3	chr6	38690674	38690874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27705.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	25.84	16.35	30.8	34.59	47.46	40.14	28.23	50.05	29.9	21.59	38.69	25.37
Merged-chr10-49050166-2	chr10	49050068	49050268	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	737769.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	3.63	3.02	2.28	3.62	43.36	65.54	43.85	38.27	29.11	27.11	18.59	12.22
Merged-chr7-44985694-3	chr7	44985585	44985785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	735.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	25.04	56.34	16.54	28.96	24.14	38.88	25.58	16.29	36.58	25.11	36.68	20.36
Merged-chr2-156179620-3	chr2	156179530	156179730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291115)	promoter-TSS (NM_001291115)	-50.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	27.46	28.93	30.8	22.93	22.09	31.98	13.95	28.35	34.22	32.64	28.64	30.7
Merged-chr4-26346880-3	chr4	26346817	26347017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-265.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	123.16	106.9	99.26	93.31	131.32	151.14	103.64	199.74	172.69	181.26	235.16	125.31
Merged-chr2-127182996-3	chr2	127182892	127183092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25288.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	50.47	39.74	58.19	67.97	50.32	63.97	48.16	57.9	67.46	56.24	98.49	54.51
Merged-chr16-4886166-3	chr16	4886089	4886289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357061)	promoter-TSS (NM_001357061)	89.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	36.75	53.58	28.52	41.02	60.96	68.05	26.91	44.07	83.4	77.83	74.37	46.05
Merged-chr5-140704910-3	chr5	140704807	140705007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-104.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	198.26	221.6	185.97	209.14	256.92	325.49	185.35	192.59	302.9	317.33	361.79	188.9
Merged-chr5-139736410-3	chr5	139736316	139736516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174850)	promoter-TSS (NM_174850)	-83.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	114.68	88.79	102.68	114.22	123.96	160.55	54.14	104.66	127.26	136.07	159.29	63.91
Merged-chr17-25133428-3	chr17	25133315	25133515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011930)	promoter-TSS (NM_011930)	24.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	33.52	26.41	34.23	18.5	31.09	37.32	13.29	24.93	45.63	35.65	29.14	28.19
Merged-chr11-74837786-3	chr11	74837618	74837818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010813, exon 4 of 6)	exon (NM_010813, exon 4 of 6)	6794.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	75.91	78.98	87.28	67.17	81.0	106.3	65.77	65.69	74.15	98.41	112.56	71.42
Merged-chr11-6444215-2	chr11	6444109	6444309	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029938, intron 1 of 4)	CpG	234.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	67.84	80.24	79.86	67.97	77.32	108.81	82.38	68.27	112.9	106.45	126.63	67.67
Merged-chr1-6215091-1	chr1	6214991	6215191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009826, intron 1 of 23)	CpG	429.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	32.71	34.96	20.54	18.9	21.27	19.76	35.54	23.22	23.6	24.6	23.62	10.96
Merged-chr7-90019747-3	chr7	90019649	90019849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9410.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	142.94	143.87	156.88	132.73	131.73	174.97	145.49	162.45	132.96	144.61	210.54	97.74
Merged-chr13-30645801-3	chr13	30645687	30645887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-14272.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	29.07	15.34	54.76	43.44	35.59	15.68	31.89	44.61	19.08	17.07	36.68	13.47
Merged-chr3-36151024-3	chr3	36150918	36151118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-62.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	32.3	37.73	44.5	49.07	53.59	47.98	56.47	76.99	66.48	42.18	89.94	43.23
Merged-chr14-55713588-3	chr14	55713471	55713671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161715)	promoter-TSS (NM_001161715)	-79.0	NM_001161715	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	48.46	27.17	30.23	34.99	45.82	43.27	26.24	37.91	49.76	49.71	43.72	26.63
Merged-chr9-90233516-3	chr9	90233424	90233624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	69.86	51.81	87.85	83.66	94.09	105.05	81.05	108.81	106.21	82.85	120.6	53.88
Merged-chr3-97993742-3	chr3	97993634	97993834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19804.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	29.88	17.1	30.8	21.72	31.5	28.85	18.6	36.31	25.18	27.62	28.64	12.22
Merged-chr10-82958514-3	chr10	82958428	82958628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-26969.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	86.41	56.85	78.72	82.85	78.96	87.49	104.97	89.83	113.1	97.91	125.12	66.1
Merged-chr2-165987141-1	chr2	165987041	165987241	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5496.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.44	4.02	1.71	3.62	2.45	7.84	2.66	2.72	14.36	19.08	6.53	9.71
Merged-chr10-95300408-3	chr10	95300297	95300497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	23312.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	68.65	54.58	49.63	29.76	81.0	93.44	56.8	50.38	77.1	78.33	59.29	45.74
Merged-chr6-128760170-3	chr6	128760049	128760249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	28492.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	28.27	38.74	21.11	22.93	28.23	36.06	14.62	16.63	38.55	31.63	52.26	35.09
Merged-chr10-67098631-3	chr10	67098532	67098732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1644.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	23.02	13.58	1.14	7.24	27.82	26.03	5.65	21.2	27.93	30.13	23.62	7.83
Merged-chr12-100837425-3	chr12	100837320	100837520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 3 of 12)	ORR1F|LTR|ERVL-MaLR	58363.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	35.13	20.12	36.51	25.74	22.91	27.59	9.3	20.8	46.42	40.67	55.27	31.95
Merged-chr10-99926751-3	chr10	99926631	99926831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89090.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	29.07	24.65	45.64	40.62	42.96	21.64	30.56	52.71	38.16	27.11	50.25	30.07
Merged-chr19-18670744-3	chr19	18670649	18670849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-31.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	283.87	277.18	298.92	274.7	293.33	335.84	261.42	309.7	308.8	272.64	462.28	166.03
Merged-chr2-71027098-3	chr2	71026989	71027189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	RLTR30B_MM|LTR|ERV1	-8715.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	33.52	31.44	55.33	70.38	51.14	64.6	38.53	72.28	49.76	52.72	88.44	29.13
Merged-chr19-59074982-3	chr19	59074877	59075077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1092.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	102.56	101.62	92.98	107.79	105.96	123.55	90.02	96.95	115.46	100.92	101.0	66.73
Merged-chr3-96594206-3	chr3	96594116	96594316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293701)	promoter-TSS (NM_001293701)	-35.0	NM_001293701	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	51.69	38.74	64.46	33.78	60.14	68.67	32.55	51.53	65.1	66.28	75.37	43.54
Merged-chr3-121953205-3	chr3	121953110	121953310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172525)	promoter-TSS (NM_172525)	-19.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	31.09	18.86	27.38	30.97	56.46	44.21	28.9	55.32	69.82	52.72	96.48	27.88
Merged-chr13-111418216-3	chr13	111418107	111418307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	71920.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	21.0	13.33	21.11	17.7	16.77	15.37	17.61	27.59	19.08	22.59	27.64	36.03
Merged-chr14-98814025-1	chr14	98813925	98814125	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	232111.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	9.29	4.53	5.7	3.62	15.14	34.81	24.58	32.27	4.33	8.03	8.04	3.45
Merged-chr17-27932540-2	chr17	27932440	27932640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	URR1A|DNA|hAT-Charlie	23234.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	24.23	14.34	30.23	33.38	27.41	22.26	33.55	36.79	4.92	3.51	7.03	1.57
Merged-chr5-125391793-3	chr5	125391708	125391908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1791.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	57.34	55.59	74.73	63.55	76.09	89.05	46.5	68.58	61.37	80.84	74.87	50.75
Merged-chr2-92434190-3	chr2	92434083	92434283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-114.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	193.01	189.4	213.92	229.66	242.6	263.4	154.46	199.09	254.91	266.12	310.03	149.43
Merged-chr19-8802349-3	chr19	8802191	8802391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098237)	promoter-TSS (NM_001098237)	-205.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	103.37	128.53	127.21	113.82	110.46	151.14	96.33	126.93	145.55	168.71	159.79	70.48
Merged-chr7-19694002-1	chr7	19693902	19694102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1343.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	15.34	12.83	13.69	28.15	24.96	14.42	18.93	19.88	26.16	20.08	30.15	20.05
Merged-chr11-120632798-4	chr11	120632713	120632913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	CpG	734.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	31.09	26.41	22.82	32.58	30.68	54.56	30.56	20.66	41.11	55.23	51.25	32.58
Merged-chr9-44084865-3	chr9	44084768	44084968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-52.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	113.87	119.22	81.0	87.68	90.82	127.94	95.33	113.55	113.1	101.43	161.3	64.85
Merged-chr4-142094506-3	chr4	142094409	142094609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10205.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	48.86	59.11	74.73	84.46	59.73	70.55	76.07	83.72	21.83	7.53	27.13	20.05
Merged-chr13-54503731-3	chr13	54503627	54503827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176987)	promoter-TSS (NM_176987)	-78.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	46.03	34.96	35.37	31.77	24.55	40.45	31.89	33.5	50.94	44.69	58.29	33.83
Merged-chr7-127876185-3	chr7	127876052	127876252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-510.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	52.09	29.93	26.81	24.13	29.05	48.29	20.26	46.21	52.32	54.73	58.29	40.41
Merged-chr16-94370329-2	chr16	94370226	94370426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	4.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	17.77	15.59	13.69	18.5	16.77	26.03	17.94	13.49	20.26	26.11	29.14	17.54
Merged-chr7-110221758-3	chr7	110221669	110221869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	66.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	54.11	53.32	76.44	56.31	55.23	83.72	47.5	50.24	62.94	64.27	54.77	45.42
Merged-chr16-25011149-3	chr16	25011056	25011256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48483.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	29.88	34.46	54.76	52.69	43.36	56.76	38.53	43.68	59.99	52.22	47.23	35.71
Merged-chr9-21546245-3	chr9	21546162	21546362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-632.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	125.98	80.49	81.0	98.94	120.69	141.11	93.34	133.88	104.83	134.06	174.36	73.62
Merged-chr18-62977871-3	chr18	62977814	62978014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	-2.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	54.92	63.39	57.05	64.75	61.37	71.18	60.79	59.24	60.97	70.29	74.37	47.3
Merged-chr3-36449504-2	chr3	36449418	36449618	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 12 of 12)	intron (NM_009673, intron 12 of 12)	26006.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	5.65	4.78	4.56	3.62	32.32	36.69	22.26	25.4	45.43	46.19	61.3	30.39
Merged-chr19-3847634-3	chr19	3847529	3847729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4144.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	35.13	36.47	37.08	22.93	22.91	55.5	15.61	10.88	38.94	42.68	40.7	23.18
Merged-chr11-120630648-3	chr11	120630541	120630741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2906.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	36.75	35.97	56.48	24.13	76.09	110.06	49.16	51.08	74.35	60.75	79.89	32.58
Merged-chr8-125845467-3	chr8	125845345	125845545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-52469.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	46.03	52.57	69.6	64.35	87.55	128.88	73.41	87.51	132.76	127.03	137.68	69.23
Merged-chr9-21167827-3	chr9	21167704	21167904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2090.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	37.55	39.49	40.5	42.63	50.73	47.04	36.87	50.38	59.6	53.22	45.73	46.36
Merged-chr13-6647860-3	chr13	6647758	6647958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	913.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	33.52	34.96	41.64	30.57	45.82	42.96	34.55	37.21	60.19	46.7	79.39	28.51
Merged-chr15-86170833-3	chr15	86170733	86170933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-14895.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	20.19	16.6	30.23	16.09	21.68	23.83	22.59	27.59	30.29	45.19	41.2	21.62
Merged-chr4-155992489-3	chr4	155992391	155992591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011341)	promoter-TSS (NM_011341)	187.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	52.09	88.29	60.47	71.99	63.82	108.81	59.46	55.77	63.33	87.37	64.32	62.65
Merged-chr7-81863362-3	chr7	81863251	81863451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	664.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	41.19	27.17	34.23	46.25	40.09	21.32	24.58	43.77	34.62	29.12	37.18	39.47
Merged-chr8-92853704-3	chr8	92853616	92853816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008610)	TTS (NM_008610)	-1617.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	16.96	10.82	20.54	19.31	15.14	11.92	17.61	13.6	31.27	35.65	22.61	7.21
Merged-chr7-45814468-3	chr7	45814358	45814558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-142.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	248.33	218.07	215.63	234.48	239.33	336.46	191.66	242.1	339.88	354.49	351.24	179.5
Merged-chr7-43544606-5	chr7	43544505	43544705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-11434.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	14.13	20.37	13.69	20.91	36.41	25.09	35.21	15.87	21.83	32.64	32.16	30.7
Merged-chr10-68275052-3	chr10	68274932	68275132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3694.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	33.92	26.16	46.21	28.56	32.73	63.97	37.54	46.21	35.99	37.16	40.2	24.43
Merged-chr13-41460080-3	chr13	41459977	41460177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	27283.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	13.33	22.39	25.67	19.31	30.27	38.26	35.54	33.28	28.13	37.66	30.65	23.18
Merged-chr8-3209455-1	chr8	3209355	3209555	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330056, intron 3 of 21)	intron (NM_001330056, intron 3 of 21)	70162.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.04	1.51	19.97	7.64	3.68	0.63	7.97	8.75	0.0	2.01	6.53	2.19
Merged-chr10-70197859-3	chr10	70197753	70197953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6811.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	33.92	30.69	49.06	71.99	49.91	42.96	52.82	62.8	58.81	37.16	81.4	35.71
Merged-chrX-106136384-3	chrX	106136204	106136404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6971.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	40.78	63.89	70.74	71.59	51.96	63.97	89.02	72.25	42.68	52.22	83.91	36.97
Merged-chr4-86857373-3	chr4	86857263	86857463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009096)	promoter-TSS (NM_009096)	4.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	123.56	114.45	104.39	123.07	151.78	174.97	95.33	132.03	166.99	176.74	205.01	132.51
Merged-chr4-40845136-3	chr4	40845026	40845226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5012.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	29.07	28.17	22.25	28.96	34.36	15.68	27.9	36.73	28.91	29.12	29.65	24.12
Merged-chr5-65476027-3	chr5	65475929	65476129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	16806.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	23.42	30.69	46.21	32.18	23.32	34.49	31.22	35.3	37.76	25.11	19.09	15.98
Merged-chr11-74831392-3	chr11	74831303	74831503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	479.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	12.92	23.14	14.26	16.89	11.86	22.89	10.96	13.07	17.9	13.56	31.15	12.22
Merged-chr11-59525438-3	chr11	59525340	59525540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16129.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	37.55	37.48	20.54	31.77	35.59	41.71	12.95	19.96	61.96	43.18	48.74	32.58
Merged-chr4-148591389-3	chr4	148591236	148591436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009272)	promoter-TSS (NM_009272)	-177.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	113.06	94.32	112.95	76.82	109.23	137.97	75.4	121.96	159.12	142.1	219.58	102.75
Merged-chr5-122269433-3	chr5	122269349	122269549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4989.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	36.75	20.63	36.51	24.53	24.96	43.9	26.57	33.7	34.42	26.11	42.71	25.06
Merged-chr11-21371299-3	chr11	21371190	21371390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-23.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	77.93	69.67	81.58	82.05	83.87	96.27	57.8	99.7	101.88	98.41	129.14	52.0
Merged-chr9-90431150-3	chr9	90431060	90431260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	72.68	73.45	78.72	70.38	59.73	83.41	70.09	70.77	109.75	79.33	94.47	85.84
Merged-chr3-95230010-3	chr3	95229928	95230128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1085.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	17.36	21.13	21.11	14.48	11.05	20.07	11.96	21.36	19.08	21.59	21.61	13.78
Merged-chr11-103320426-3	chr11	103320342	103320542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24260.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	38.36	55.08	51.91	33.78	36.82	69.61	25.24	24.25	57.24	45.69	50.75	18.8
Merged-chr12-81719379-3	chr12	81719304	81719504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61766.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	54.51	54.33	63.32	78.83	55.64	51.74	42.19	63.14	56.25	46.7	58.29	36.03
Merged-chr16-11140815-3	chr16	11140708	11140908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145931, exon 21 of 23)	exon (NM_145931, exon 21 of 23)	-6276.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	52.9	63.13	70.17	105.38	68.32	82.78	84.04	84.95	75.53	51.72	91.45	58.27
Merged-chr10-8858861-3	chr10	8858758	8858958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27212.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	50.47	39.99	55.33	51.08	47.05	58.64	46.17	64.46	59.6	55.23	57.79	24.12
Merged-chr16-44347549-3	chr16	44347462	44347662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144550, intron 1 of 17)	CpG	161.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	56.94	91.3	70.17	113.02	73.23	101.28	102.97	80.08	96.18	103.94	126.63	82.7
Merged-chr11-53796955-3	chr11	53796855	53797055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	26482.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	44.42	46.78	61.61	34.19	57.27	83.72	36.87	30.53	77.5	46.7	60.3	23.18
Merged-chr6-134045155-3	chr6	134045068	134045268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	9468.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.48	10.82	9.7	13.27	9.41	17.56	23.58	21.42	25.57	19.08	19.09	20.05
Merged-chr8-73849982-1	chr8	73849882	73850082	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-496442.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.04	3.02	5.13	8.45	21.68	23.52	26.57	52.82	4.92	3.51	13.57	8.14
Merged-chr12-108937052-3	chr12	108936945	108937145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42773.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	60.57	36.72	77.58	64.35	89.18	160.86	105.96	144.14	84.77	121.51	149.24	71.42
Merged-chr17-32336083-3	chr17	32335965	32336165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017476, intron 6 of 13)	intron (NM_017476, intron 6 of 13)	14512.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	24.63	19.87	41.07	27.75	45.0	23.2	33.55	47.24	17.9	20.08	39.19	21.3
Merged-chr4-43925833-3	chr4	43925728	43925928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016678, intron 12 of 20)	intron (NM_016678, intron 12 of 20)	-31874.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	77.12	92.06	90.13	73.2	67.91	104.42	46.5	34.88	73.56	76.82	87.93	52.63
Merged-chr10-125370293-3	chr10	125370199	125370399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-41336.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	135.27	144.88	152.88	173.35	108.0	160.24	166.75	151.99	163.05	143.1	190.94	111.84
Merged-chr16-44139175-3	chr16	44139064	44139264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	95.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	92.07	85.77	82.15	101.76	91.23	115.39	88.03	75.45	96.38	117.49	101.5	66.41
Merged-chr5-107986367-3	chr5	107986258	107986458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	MamSINE1|SINE|tRNA	719.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	18.98	19.62	18.83	18.1	27.82	17.56	14.95	20.86	17.9	16.07	27.64	18.8
Merged-chr17-47220034-3	chr17	47219889	47220089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	LTR33|LTR|ERVL	-10241.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	33.92	23.14	40.5	38.61	34.36	33.55	45.18	43.07	36.98	29.12	41.71	34.77
Merged-chr10-80928665-3	chr10	80928552	80928752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1439.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	65.01	51.06	60.47	31.77	58.5	74.0	48.83	26.24	76.12	69.79	64.32	41.04
Merged-chr11-17002634-3	chr11	17002545	17002745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	6073.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	49.26	46.53	89.56	75.21	66.27	69.61	73.08	96.25	85.17	84.35	121.1	49.5
Merged-chr10-75326775-3	chr10	75326665	75326865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009630, intron 2 of 2)	intron (NM_009630, intron 2 of 2)	1907.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	27.86	28.17	19.4	23.33	22.91	25.71	19.93	22.51	57.43	52.22	55.78	24.43
Merged-chr10-61147679-3	chr10	61147576	61147776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316674)	promoter-TSS (NM_001316674)	8.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	121.95	132.05	127.78	119.05	117.82	158.35	111.94	124.63	187.25	149.63	214.06	98.68
Merged-chr12-73286821-3	chr12	73286724	73286924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	-24.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	124.77	129.79	95.84	128.7	125.59	172.78	97.99	125.64	142.8	137.07	144.71	87.4
Merged-chr14-102983336-3	chr14	102983227	102983427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-690.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	82.78	49.55	111.24	63.55	63.41	79.33	70.75	85.85	68.05	78.33	82.91	49.18
Merged-chr11-32558293-3	chr11	32558178	32558378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	MER5A|DNA|hAT-Charlie	25012.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	35.13	59.11	24.53	28.96	38.46	77.14	20.59	22.91	44.06	53.22	37.18	13.16
Merged-chr16-35764213-3	chr16	35764123	35764323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	5133.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	40.38	38.99	47.92	37.4	26.59	58.01	40.86	44.86	42.29	30.63	43.72	24.12
Merged-chr5-146299675-3	chr5	146299562	146299762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359990, intron 11 of 12)	intron (NM_001359990, intron 11 of 12)	68412.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	24.23	13.08	22.25	28.96	20.86	15.99	12.95	21.0	15.34	24.6	28.64	22.87
Merged-chr19-9952534-3	chr19	9952421	9952621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28079.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	54.11	25.4	45.64	37.0	59.73	59.58	37.87	48.11	62.35	63.27	75.37	50.44
Merged-chr10-59736220-3	chr10	59736121	59736321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33658.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	44.82	42.26	63.32	20.91	63.0	78.08	52.48	46.85	48.19	35.15	59.29	15.98
Merged-chr1-183297237-3	chr1	183297151	183297351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	42.0	NM_001357242	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	48.46	65.9	37.08	59.93	52.77	61.15	67.43	29.66	56.06	56.74	77.38	52.0
Merged-chr2-75775402-3	chr2	75775293	75775493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56784.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	40.38	21.38	45.07	30.57	53.18	41.71	34.88	59.61	48.19	31.63	71.86	41.98
Merged-chr3-75297180-3	chr3	75297070	75297270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27092.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	37.15	24.9	38.22	29.36	57.68	50.8	31.22	47.3	44.06	50.21	31.66	31.33
Merged-chr6-8259237-3	chr6	8259141	8259341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-47.0	NM_001302354	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	224.51	209.02	277.81	273.5	294.55	298.83	286.33	371.61	325.91	301.26	493.94	212.39
Merged-chr15-27883048-3	chr15	27882959	27883159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	142789.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	53.7	50.05	49.06	54.3	55.64	54.56	42.19	62.36	65.1	53.73	78.39	45.11
Merged-chr3-88138870-3	chr3	88138802	88139002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3470.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	15.34	18.61	18.25	21.72	29.05	14.74	19.27	20.47	23.41	31.13	24.62	24.12
Merged-chr8-94180149-3	chr8	94180042	94180242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013602, exon 3 of 3)	exon (NM_013602, exon 3 of 3)	1053.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	32.3	28.17	27.95	35.39	50.73	47.04	49.83	63.98	67.46	40.17	58.29	35.4
Merged-chr3-88603936-3	chr3	88603832	88604032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12275.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	60.97	34.21	74.16	33.38	76.5	106.3	40.52	61.63	83.59	56.74	81.4	31.95
Merged-chr7-140947155-3	chr7	140947062	140947262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153832, exon 12 of 12)	non-coding (NR_153832, exon 12 of 12)	3077.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	92.07	66.65	78.72	67.57	93.28	107.87	58.13	75.84	103.65	102.43	112.56	48.56
Merged-chrX-7947978-3	chrX	7947871	7948071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010413)	promoter-TSS (NM_010413)	-82.0	NM_010413	15185.0	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	96.91	109.41	104.96	111.81	133.78	167.13	119.58	118.49	144.37	141.59	175.37	82.39
Merged-chr15-76287847-3	chr15	76287737	76287937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028852, intron 4 of 4)	intron (NM_028852, intron 4 of 4)	3131.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	25.84	27.42	37.08	27.75	45.82	35.43	25.58	41.1	37.17	59.25	61.3	37.28
Merged-chr19-29253970-3	chr19	29253874	29254074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2171.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	49.26	42.76	32.52	36.2	31.5	31.04	27.9	38.27	48.58	36.15	62.31	29.13
Merged-chr12-78862104-3	chr12	78861972	78862172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	0.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	30.69	33.45	27.38	32.98	34.77	40.76	32.55	33.87	47.99	62.76	56.28	38.22
Merged-chr2-173218986-3	chr2	173218895	173219095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-73.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	53.3	56.34	73.02	87.28	49.09	62.4	49.49	73.65	86.94	81.34	89.44	47.3
Merged-chr14-77874836-3	chr14	77874709	77874909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025384, exon 1 of 6)	exon (NM_025384, exon 1 of 6)	108.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	27.86	20.88	21.68	28.56	15.96	25.4	30.56	24.87	32.45	35.15	37.69	23.49
Merged-chr7-80246360-3	chr7	80246244	80246444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-32.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	99.74	100.86	94.13	84.86	122.32	131.39	60.79	90.39	129.81	120.51	154.26	70.48
Merged-chr3-159495401-3	chr3	159495298	159495498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-35.0	NM_029523	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	100.95	95.83	112.38	170.53	135.0	115.71	104.3	181.04	200.82	155.15	266.82	127.5
Merged-chr6-108658154-3	chr6	108658062	108658262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2467.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	79.14	57.1	57.62	61.54	90.41	107.24	54.81	79.79	95.0	75.82	85.92	38.85
Merged-chr5-135707978-3	chr5	135707885	135708085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	18840.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	27.46	37.98	50.2	38.21	82.23	72.75	66.1	90.56	58.02	65.27	105.52	55.76
Merged-chr1-55027521-3	chr1	55027428	55027628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031179)	promoter-TSS (NM_031179)	-50.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	201.49	164.75	168.28	143.59	191.46	232.67	127.89	169.04	216.75	232.47	249.23	99.93
Merged-chr11-89060824-3	chr11	89060740	89060940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	89.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	47.65	36.47	38.22	45.85	49.5	36.69	21.92	24.62	45.63	56.24	65.83	41.35
Merged-chr15-100126887-3	chr15	100126788	100126988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-27508.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	17.36	22.13	21.68	22.12	30.27	16.93	11.96	26.69	23.6	19.08	36.68	24.43
Merged-chr12-32132066-3	chr12	32131986	32132186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70807.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	32.71	25.66	45.64	35.39	39.27	31.36	21.59	40.51	33.63	28.12	49.75	35.4
Merged-chr14-17902588-3	chr14	17902498	17902698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	MIR3|SINE|MIR	-79046.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	31.9	36.47	59.33	94.92	37.64	17.56	83.04	79.01	32.26	43.68	75.37	43.23
Merged-chr5-5559550-3	chr5	5559445	5559645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-4.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	109.43	111.18	95.84	112.21	147.28	131.39	79.39	96.48	159.12	142.1	187.93	93.35
Merged-chr5-121564588-3	chr5	121564499	121564699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18707.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	22.21	19.37	25.1	16.09	22.5	34.18	13.62	20.36	28.52	29.12	39.19	13.47
Merged-chr15-59807948-3	chr15	59807842	59808042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12983.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	138.1	106.9	158.59	123.07	130.5	159.29	146.82	146.08	159.91	171.72	226.62	104.94
Merged-chr18-61399029-3	chr18	61398887	61399087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	CpG	-1087.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	37.15	44.52	41.07	48.67	33.96	60.52	42.19	45.67	63.92	65.78	71.35	52.0
Merged-chr2-90574383-3	chr2	90574294	90574494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	6253.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	137.69	133.56	128.92	154.85	122.32	177.8	116.92	140.86	120.77	145.61	171.35	81.76
Merged-chr10-68125210-3	chr10	68125105	68125305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	145635.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	60.17	45.28	88.99	94.52	92.87	61.46	76.73	102.45	54.29	51.21	90.95	42.92
Merged-chr15-12233256-3	chr15	12233143	12233343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 3 of 15)	intron (NM_001356498, intron 3 of 15)	28215.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	44.01	32.45	49.06	64.35	27.0	49.23	56.47	76.51	43.66	42.68	76.88	27.88
Merged-chr10-93124378-3	chr10	93124200	93124400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36576.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	18.98	30.18	27.95	30.97	24.96	38.57	19.93	22.74	45.24	53.22	31.66	37.59
Merged-chr9-7764819-3	chr9	7764725	7764925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	660.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	57.74	49.3	62.18	31.37	47.87	50.17	59.79	37.99	92.44	65.27	102.51	37.59
Merged-chr15-75940993-3	chr15	75940888	75941088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030199)	promoter-TSS (NM_030199)	36.0	NM_030199	78834.0	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	43.21	43.26	46.21	65.96	64.64	84.35	38.86	56.41	65.5	59.25	68.34	39.78
Merged-chr13-42052111-1	chr13	42052011	42052211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	90.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	27.05	50.81	35.37	22.12	24.14	52.68	37.54	13.99	41.89	54.73	38.19	19.42
Merged-chr11-3162171-2	chr11	3162066	3162266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	31297.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	24.63	27.42	36.51	27.35	28.64	26.65	32.88	34.91	0.39	1.0	1.0	2.19
Merged-chr4-99120963-3	chr4	99120845	99121045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290636)	promoter-TSS (NM_001290636)	-30.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	63.8	47.29	45.64	57.11	75.68	73.69	53.15	89.52	85.76	77.32	115.07	58.58
Merged-chr4-24898049-3	chr4	24897988	24898188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	5.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	92.07	76.97	103.82	93.71	134.19	139.85	92.34	128.61	150.07	146.11	180.89	95.23
Merged-chr2-164359897-3	chr2	164359809	164360009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3402.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	25.04	22.39	22.82	20.51	35.18	37.32	14.62	21.11	40.32	28.62	26.63	12.22
Merged-chr1-84539361-1	chr1	84539261	84539461	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 4 of 12)	intron (NM_152915, intron 4 of 12)	-156478.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	1.01	5.13	0.8	4.91	0.0	10.3	8.75	2.16	2.51	3.52	1.88
Merged-chr7-5102780-1	chr7	5102680	5102880	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14131.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	4.44	4.28	9.13	4.83	3.27	3.14	16.28	15.5	3.54	3.51	4.02	1.25
Merged-chr16-70811037-3	chr16	70810947	70811147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	194622.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	81.97	56.34	81.58	78.43	92.46	86.23	64.77	111.0	95.98	76.82	110.04	51.06
Merged-chr8-68914691-3	chr8	68914576	68914776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34121.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	37.96	45.02	81.0	73.2	59.73	66.16	45.18	58.74	54.88	52.72	65.32	48.56
Merged-chr1-57995981-3	chr1	57995872	57996072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199007)	promoter-TSS (NM_199007)	-2.0	NM_199007	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	53.7	50.81	62.75	68.78	53.18	64.28	47.5	65.24	95.98	82.85	128.13	44.17
Merged-chr9-42472217-3	chr9	42472087	42472287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173038)	promoter-TSS (NM_173038)	71.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	46.03	55.34	25.67	43.44	37.64	58.32	26.57	41.3	48.98	47.2	60.3	37.59
Merged-chr2-69790512-3	chr2	69790397	69790597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028521, intron 2 of 3)	intron (NM_028521, intron 2 of 3)	760.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	41.59	32.2	26.24	28.15	30.27	42.02	25.24	32.8	46.62	65.78	61.3	30.7
Merged-chr12-85478426-2	chr12	85478357	85478557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4567.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	14.94	7.29	11.98	10.46	17.59	12.23	9.3	11.66	9.64	14.06	10.55	11.9
Merged-chr18-4908344-3	chr18	4908240	4908440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95854.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	34.73	20.12	33.09	19.71	58.91	25.09	67.1	60.62	22.82	19.58	49.24	21.3
Merged-chr12-51971393-3	chr12	51971307	51971507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-86.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	95.3	102.62	85.0	71.59	118.64	121.04	85.04	80.86	112.11	132.05	149.74	71.11
Merged-chr13-108316293-3	chr13	108316257	108316457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178683)	promoter-TSS (NM_178683)	20.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	91.26	94.32	77.58	110.6	90.0	84.98	55.14	86.13	88.71	77.83	93.46	59.52
Merged-chr1-165460581-3	chr1	165460482	165460682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-119.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	142.94	115.45	120.94	117.04	153.82	174.97	133.86	153.22	220.29	207.87	244.21	128.13
Merged-chr5-91000137-3	chr5	91000037	91000237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27380.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	33.11	26.41	37.65	31.77	25.36	24.46	26.24	40.74	38.16	33.14	47.23	26.94
Merged-chr9-110656555-3	chr9	110656465	110656665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	62.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	66.63	53.83	49.06	94.52	65.05	84.04	80.05	52.57	83.59	101.43	90.95	53.26
Merged-chr18-39196742-3	chr18	39196627	39196827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	203582.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	41.99	33.96	49.63	51.08	48.68	47.98	20.59	46.99	50.35	61.76	66.33	23.49
Merged-chr9-31247605-3	chr9	31247496	31247696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23805.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	25.04	24.15	42.78	53.49	49.5	61.46	44.18	56.8	32.85	41.67	64.32	25.69
Merged-chr8-105605206-3	chr8	105605112	105605312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081241)	promoter-TSS (NM_001081241)	-17.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	21.0	14.34	23.39	16.09	30.27	20.7	23.58	15.31	16.52	25.11	24.62	24.43
Merged-chr17-69226169-3	chr17	69226074	69226274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	RLTR16|LTR|ERVK	51032.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	88.03	89.8	75.3	110.2	83.87	126.68	81.38	115.37	200.62	129.54	172.35	85.21
Merged-chr13-104139771-3	chr13	104139661	104139861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361054, exon 11 of 11)	exon (NM_001361054, exon 11 of 11)	30020.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	18.17	14.84	14.26	20.91	25.36	22.26	28.9	28.71	37.76	27.62	39.7	17.54
Merged-chr16-92440368-3	chr16	92440236	92440436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25833.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	37.15	23.14	33.09	41.83	39.27	55.19	46.17	51.42	19.47	28.62	25.12	12.53
Merged-chr8-108985062-3	chr8	108984960	108985160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48200.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	39.17	24.9	41.07	43.84	56.46	43.59	39.2	52.99	54.88	36.15	70.35	23.81
Merged-chr10-21890527-3	chr10	21890447	21890647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	ID_B1|SINE|B4	8363.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	76.72	42.76	62.18	72.4	62.18	58.32	70.42	85.77	57.63	66.28	86.43	53.57
Merged-chr4-132757221-3	chr4	132757114	132757314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133888)	promoter-TSS (NM_133888)	-43.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	47.65	48.04	30.23	25.34	33.55	65.54	22.59	26.8	43.07	39.67	62.81	18.48
Merged-chr1-151345269-3	chr1	151345157	151345357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039511, intron 1 of 7)	CpG	759.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	23.02	24.65	42.78	27.75	39.27	41.39	30.23	34.68	40.12	38.16	57.79	20.36
Merged-chr12-55491938-3	chr12	55491861	55492061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010907, intron 1 of 5)	intron (NM_010907, intron 1 of 5)	686.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	211.19	181.35	176.84	137.55	223.78	262.77	173.06	184.46	228.16	251.55	293.45	110.9
Merged-chr10-88441406-3	chr10	88441310	88441510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 19 of 20)	L1MB5|LINE|L1	-18177.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	92.47	125.26	137.48	121.06	104.73	159.29	131.54	131.69	167.77	167.7	153.26	99.62
Merged-chr5-30920739-3	chr5	30920634	30920834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	-825.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	13.33	18.86	5.13	18.9	15.96	27.28	14.28	23.19	20.46	19.58	31.66	15.04
Merged-chrX-163302877-3	chrX	163302780	163302980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	49684.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	19.79	20.63	29.09	16.89	28.23	24.15	27.57	22.4	28.32	31.13	33.67	12.53
Merged-chr7-89981159-3	chr7	89981051	89981251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021876)	promoter-TSS (NM_021876)	-175.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	31.09	29.68	26.24	37.0	32.73	47.98	24.91	26.41	36.98	21.09	34.17	19.11
Merged-chr8-78508528-3	chr8	78508391	78508591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029736)	promoter-TSS (NM_029736)	77.0	NM_001358975	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	25.84	18.11	14.26	18.5	26.59	11.29	22.59	19.74	34.22	32.13	39.19	30.39
Merged-chr5-100615718-1	chr5	100615618	100615818	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43513.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	8.48	6.54	7.42	2.82	4.91	6.59	3.99	2.07	13.57	12.55	5.53	0.94
Merged-chr3-60528399-3	chr3	60528294	60528494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	27215.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	21.8	20.88	25.67	23.33	38.46	19.44	30.56	27.9	24.78	24.1	25.63	18.17
Merged-chr14-17902208-2	chr14	17902108	17902308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-79436.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	16.15	13.08	15.4	20.11	17.59	9.41	18.6	19.51	23.21	16.57	31.66	16.29
Merged-chr3-87017226-3	chr3	87017147	87017347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17907.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	29.07	25.4	32.52	41.02	42.14	33.55	23.25	27.2	39.93	34.14	42.71	23.49
Merged-chr4-116788248-3	chr4	116788159	116788359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	19300.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	43.61	18.11	65.6	38.21	60.96	51.74	68.1	78.73	42.88	27.11	58.29	42.29
Merged-chr11-62756960-3	chr11	62756859	62757059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-27866.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	51.69	53.07	37.08	63.95	43.36	51.43	37.54	47.19	38.75	35.15	51.25	30.39
Merged-chr8-126565448-3	chr8	126565344	126565544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	75.51	37.48	44.5	51.88	98.18	91.56	70.09	85.71	80.84	63.77	101.5	41.35
Merged-chr1-177490005-3	chr1	177489926	177490126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44205.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	49.26	49.8	47.92	60.73	52.77	55.19	59.46	76.93	61.17	38.66	57.28	58.58
Merged-chr19-4811724-3	chr19	4811632	4811832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019869)	promoter-TSS (NM_019869)	-98.0	NM_019869	56275.0	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	144.16	120.98	130.63	111.41	137.46	166.82	89.69	127.94	162.46	152.64	131.65	92.73
Merged-chr11-120573116-3	chr11	120573003	120573203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011032, exon 1 of 11)	5' UTR (NM_011032, exon 1 of 11)	150.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	282.66	265.11	237.88	224.43	319.1	423.64	253.78	230.58	316.08	392.65	366.81	196.42
Merged-chr18-80294871-3	chr18	80294778	80294978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001190373, exon 4 of 4)	3' UTR (NM_001190373, exon 4 of 4)	38572.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	61.38	59.86	33.09	25.74	35.59	83.1	25.58	28.6	51.93	57.74	45.73	18.48
Merged-chr1-178405680-3	chr1	178405583	178405783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026626)	promoter-TSS (NM_026626)	-335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	65.41	47.04	57.62	75.61	57.68	45.47	41.85	56.16	48.98	48.7	96.98	45.11
Merged-chr19-29251367-3	chr19	29251264	29251464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-439.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	139.31	140.35	106.68	95.32	119.87	197.55	105.3	97.35	124.5	177.24	121.6	47.93
Merged-chr6-123259923-1	chr6	123259823	123260023	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2184.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	2.02	3.02	13.69	8.04	10.23	4.7	2.99	12.14	11.8	6.03	6.53	5.01
Merged-chr9-73089781-3	chr9	73089674	73089874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-12624.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	41.59	43.51	76.44	46.25	89.18	61.15	68.1	102.25	57.24	67.28	65.83	43.23
Merged-chr3-137942412-3	chr3	137942320	137942520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23865.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	28.67	46.78	34.8	22.52	45.0	67.73	26.24	19.29	56.45	51.72	29.14	14.1
Merged-chr10-80433668-3	chr10	80433531	80433731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	22.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	38.36	38.99	38.79	44.64	50.32	54.25	31.22	37.68	51.34	57.24	47.74	35.09
Merged-chr5-144255196-3	chr5	144255091	144255291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-34.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	65.82	59.61	76.44	41.43	74.46	67.42	41.52	48.81	118.6	155.15	147.23	73.93
Merged-chrX-167326396-3	chrX	167326302	167326502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	4169.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	40.38	31.19	28.52	32.98	20.46	45.47	41.19	44.94	48.98	62.76	60.3	30.07
Merged-chr10-17947415-3	chr10	17947319	17947519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	CpG	648.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	45.23	69.17	57.62	61.54	71.18	58.95	49.83	68.3	84.58	64.27	111.05	42.29
Merged-chr7-27537428-3	chr7	27537322	27537522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	14161.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	54.51	48.04	54.76	47.86	47.87	58.64	44.51	56.97	62.35	36.65	68.84	55.45
Merged-chr14-22801545-3	chr14	22801451	22801651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-258753.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	52.09	57.35	66.17	70.38	71.18	110.06	80.05	125.16	88.12	78.33	117.08	54.51
Merged-chr15-90680173-3	chr15	90680097	90680297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-809.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	16.56	28.67	23.96	26.14	53.59	56.76	31.22	39.06	40.12	25.11	48.74	25.69
Merged-chr4-98383223-3	chr4	98383131	98383331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	34.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	56.53	41.0	46.21	34.99	70.77	64.6	52.82	73.07	76.91	77.32	111.05	46.68
Merged-chr6-38950043-3	chr6	38949938	38950138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31052.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	43.61	35.72	42.78	47.06	29.86	74.0	34.55	44.19	56.25	51.21	69.34	32.27
Merged-chr15-76607649-3	chr15	76607571	76607771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	-80.0	NM_001164173	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	60.57	69.92	64.46	35.39	74.05	96.89	42.19	47.83	89.3	78.83	93.46	66.1
Merged-chr4-34495496-3	chr4	34495406	34495606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55109.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	27.86	23.14	18.83	26.14	32.32	37.63	27.57	25.07	31.08	30.13	59.8	24.12
Merged-chr2-35495659-3	chr2	35495561	35495761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	-34212.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	46.44	36.47	76.44	65.16	49.09	47.98	79.39	75.25	67.07	57.74	44.72	31.33
Merged-chr17-21707713-3	chr17	21707624	21707824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-17.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	76.72	50.31	66.74	75.61	65.46	69.93	54.81	76.91	57.04	25.11	65.32	34.77
Merged-chr1-107497027-3	chr1	107496937	107497137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14386.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	28.27	16.6	42.21	33.38	66.27	48.6	60.46	77.08	50.35	36.65	68.34	39.47
Merged-chr15-10981832-3	chr15	10981739	10981939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	83.0	NM_008537	17117.0	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	98.12	138.59	120.94	157.66	147.69	150.83	239.5	174.06	89.69	126.53	135.17	89.59
Merged-chr10-82699069-3	chr10	82698972	82699172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	65.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	42.4	42.51	58.19	45.05	58.09	76.51	53.48	54.34	89.69	92.39	124.11	50.75
Merged-chr18-36725675-3	chr18	36725574	36725774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009841, exon 2 of 2)	exon (NM_009841, exon 2 of 2)	1141.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	24.23	27.92	22.82	27.75	36.41	31.98	22.92	25.4	24.39	24.6	31.66	19.74
Merged-chrX-102033742-3	chrX	102033621	102033821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	37586.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	24.23	21.13	31.95	25.34	29.86	31.36	21.92	33.87	27.34	30.13	31.66	20.05
Merged-chr18-90510130-3	chr18	90510052	90510252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-2.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	174.04	137.84	110.1	163.7	177.55	192.85	180.37	199.26	193.54	192.81	209.03	126.87
Merged-chr19-37207576-3	chr19	37207464	37207664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	19.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	58.15	66.15	68.45	58.32	49.5	65.22	49.16	48.39	61.76	63.27	82.91	37.91
Merged-chr13-60627142-3	chr13	60627037	60627237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	24926.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	19.38	5.53	29.09	30.57	53.18	43.9	54.14	86.83	39.73	19.58	54.27	36.65
Merged-chr11-75571401-3	chr11	75571300	75571500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 12 of 13)	intron (NM_001199284, intron 12 of 13)	-16679.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	86.41	70.93	118.65	98.54	143.6	121.35	108.62	119.55	129.42	147.62	173.36	81.45
Merged-chr8-105636828-3	chr8	105636705	105636905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358924, intron 1 of 11)	CpG	267.0	NM_001358924	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	61.78	63.39	37.65	41.43	57.27	50.49	35.54	53.36	76.91	86.36	81.9	32.89
Merged-chr4-32800353-3	chr4	32800243	32800443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175364)	promoter-TSS (NM_175364)	84.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	31.9	53.07	51.34	56.71	34.36	68.67	77.06	47.27	39.53	32.64	48.24	30.39
Merged-chr11-54492241-3	chr11	54492136	54492336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 9 of 17)	L1MB3|LINE|L1	-30609.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	30.28	17.1	28.52	27.35	43.77	72.12	39.86	40.82	42.48	50.21	39.19	23.81
Merged-chr2-133481161-1	chr2	133481061	133481261	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70998.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.46	1.76	5.7	7.24	4.5	2.51	11.96	9.39	3.74	6.03	2.51	1.88
Merged-chr3-157947078-3	chr3	157946991	157947191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359909)	promoter-TSS (NM_001359909)	91.0	NM_001013806	433667.0	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	77.53	96.34	49.63	104.17	97.78	103.79	118.59	67.04	80.64	100.42	112.56	75.81
Merged-chr5-145083795-3	chr5	145083718	145083918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019767)	promoter-TSS (NM_019767)	-51.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	71.47	57.6	85.0	82.85	78.14	88.74	41.85	73.54	53.11	75.82	58.29	34.46
Merged-chr15-31352735-1	chr15	31352635	31352835	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	MLT2C2|LTR|ERVL	15024.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	2.83	3.27	2.85	6.44	5.73	3.14	12.62	14.07	4.72	3.01	3.52	5.01
Merged-chr16-10498346-3	chr16	10498234	10498434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	8553.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	55.72	66.4	41.64	22.93	40.5	83.41	31.56	24.03	84.77	70.29	70.35	18.48
Merged-chr10-68085780-3	chr10	68085682	68085882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106212.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	52.49	30.43	44.5	56.31	48.27	49.86	50.16	60.84	49.37	53.22	54.77	42.29
Merged-chr9-106330383-3	chr9	106330309	106330509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-38223.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	33.11	17.86	21.68	18.1	23.73	30.1	12.62	14.64	33.04	30.13	27.64	22.24
Merged-chr2-129196488-3	chr2	129196378	129196578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2295.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	85.2	67.41	85.0	59.93	83.46	108.5	80.39	57.22	94.02	98.41	81.4	55.13
Merged-chr9-54560262-3	chr9	54560153	54560353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019686)	promoter-TSS (NM_019686)	-174.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	92.87	77.72	119.8	132.32	119.05	104.73	85.37	128.64	116.83	80.84	147.73	76.75
Merged-chr12-102379189-3	chr12	102379095	102379295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	60618.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.4	14.34	19.97	39.01	26.59	37.32	14.28	52.96	17.7	32.13	24.62	15.66
Merged-chr10-8010107-3	chr10	8010003	8010203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53980.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	62.99	38.23	47.35	59.93	102.68	73.38	90.35	110.69	62.15	67.78	68.84	45.42
Merged-chr2-152810369-3	chr2	152810287	152810487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	18102.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	51.69	63.64	76.44	84.46	63.82	71.81	79.06	76.26	102.67	70.29	85.92	71.11
Merged-chr5-123427764-3	chr5	123427645	123427845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	32947.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	52.49	48.8	84.43	76.42	59.32	65.54	60.79	80.66	61.56	51.21	68.34	45.11
Merged-chr4-132491978-3	chr4	132491871	132492071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144907)	TTS (NM_144907)	18485.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	15.34	5.03	19.4	29.76	28.64	20.7	43.51	47.24	28.72	20.08	44.22	18.17
Merged-chr2-30392271-3	chr2	30392167	30392367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	13.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	182.92	176.32	151.74	192.25	218.46	250.86	164.76	204.42	217.34	215.4	257.27	123.43
Merged-chr8-35634106-3	chr8	35634020	35634220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-45100.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	65.82	57.35	86.14	97.33	73.64	101.28	74.07	128.61	99.52	111.47	164.81	58.89
Merged-chr12-35889527-3	chr12	35889447	35889647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36074.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	65.82	62.63	72.45	79.64	89.18	102.85	73.74	125.16	86.74	99.92	96.48	61.4
Merged-chr14-67072469-3	chr14	67072397	67072597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205188)	promoter-TSS (NM_001205188)	-26.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	47.24	35.72	37.65	39.01	47.05	65.22	39.2	38.94	75.92	57.24	76.38	49.5
Merged-chr5-36563312-3	chr5	36563193	36563393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19104.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	71.88	68.67	84.43	86.07	70.77	74.94	43.85	61.63	74.35	85.36	116.07	55.76
Merged-chr3-146135601-3	chr3	146135502	146135702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134160, intron 8 of 11)	L2a|LINE|L2	13811.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	27.05	15.34	25.67	20.91	20.86	24.46	14.28	27.11	26.95	8.03	26.13	16.6
Merged-chr16-35898214-1	chr16	35898114	35898314	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-26832.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	3.23	8.55	2.28	7.64	13.91	16.31	3.65	11.89	5.31	4.02	5.02	7.21
Merged-chrX-74299930-3	chrX	74299844	74300044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358375, intron 2 of 8)	intron (NM_001358375, intron 2 of 8)	2847.0	NM_018794	54411.0	Mm.21961	NM_018794	ENSMUSG00000019087	Atp6ap1	16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383	ATPase, H+ transporting, lysosomal accessory protein 1	protein-coding	19.38	24.4	37.08	37.0	31.5	36.06	27.57	31.63	30.29	30.13	41.2	30.7
Merged-chr7-127260807-3	chr7	127260712	127260912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-145.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	204.32	206.25	202.51	177.37	208.23	257.76	160.77	172.65	256.09	287.2	269.83	170.73
Merged-chr16-34690611-3	chr16	34690527	34690727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172824)	promoter-TSS (NM_172824)	11.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	89.24	110.92	112.38	101.35	87.96	120.73	90.68	91.57	116.05	126.03	146.72	62.97
Merged-chr2-167775420-3	chr2	167775329	167775529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84252.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	249.95	185.88	249.29	217.99	329.74	368.76	231.19	269.33	307.62	330.39	383.39	246.85
Merged-chr15-80083401-3	chr15	80083235	80083435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	71.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	55.32	61.12	48.49	44.64	63.82	81.22	27.9	44.33	76.51	98.91	92.96	46.99
Merged-chr7-27674626-3	chr7	27674603	27674803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290528)	promoter-TSS (NM_001290528)	42.0	NM_198417	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	44.42	54.08	61.04	57.51	49.91	53.31	63.78	57.59	47.4	59.25	57.79	41.04
Merged-chr15-66746602-3	chr15	66746482	66746682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	75812.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	95.7	68.67	110.1	90.49	128.46	132.64	113.27	114.76	87.92	101.43	132.66	64.53
Merged-chr7-28810755-3	chr7	28810663	28810863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-127.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	197.46	211.03	177.41	215.18	217.64	279.71	193.99	217.66	265.92	310.3	312.54	175.12
Merged-chr13-34793262-3	chr13	34793152	34793352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53610.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	26.25	30.69	45.07	50.27	33.14	42.02	34.55	44.97	38.35	34.14	48.74	30.39
Merged-chr12-86047584-3	chr12	86047491	86047691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	31450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	46.03	26.66	88.42	64.35	62.18	36.37	84.37	112.96	80.64	44.19	133.66	62.97
Merged-chr9-20607374-3	chr9	20607318	20607518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033729)	promoter-TSS (NR_033729)	-57.0	NR_033729	66662.0	Mm.477847	NM_175110	ENSMUSG00000062470	Fbxl12os	5730577I03Rik	F-box and leucine-rich repeat protein 12, opposite strand	pseudo	44.82	21.38	29.66	37.0	47.46	53.93	32.55	49.37	60.19	57.74	61.3	36.97
Merged-chr4-101694695-3	chr4	101694587	101694787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22720.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	14.54	15.09	17.11	24.13	60.96	43.59	43.18	39.42	40.71	53.22	56.78	26.63
Merged-chr17-71310947-3	chr17	71310843	71311043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145158)	promoter-TSS (NM_145158)	68.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	38.36	41.0	27.38	19.31	58.5	52.37	58.79	65.8	29.11	25.11	46.73	31.33
Merged-chr10-44327299-3	chr10	44327192	44327392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-32384.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	30.28	41.25	40.5	49.07	48.27	42.96	41.52	85.65	48.39	53.73	70.35	44.8
Merged-chr11-95835464-3	chr11	95835368	95835568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-6827.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	24.23	26.41	24.53	39.42	63.82	72.12	58.79	59.55	61.37	77.32	89.94	60.77
Merged-chr15-5244227-3	chr15	5244136	5244336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-49.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	51.69	42.51	41.64	38.21	67.09	55.82	43.18	42.08	71.2	67.78	113.56	38.85
Merged-chr14-77850808-1	chr14	77850708	77850908	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24109.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.23	3.02	9.13	6.03	3.68	2.51	5.98	15.67	4.13	3.51	2.01	8.46
Merged-chr17-57113114-3	chr17	57113014	57113214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7172.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	85.6	83.0	76.44	68.37	92.05	115.08	79.39	73.37	106.8	101.93	112.05	60.46
Merged-chr2-71055691-3	chr2	71055594	71055794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	-50.0	NM_001165982	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	131.23	122.24	123.79	115.43	149.32	125.43	97.33	122.22	154.99	135.57	178.38	76.75
Merged-chr17-74802928-1	chr17	74802828	74803028	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	L1MB2|LINE|L1	85178.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.46	5.03	11.98	10.86	0.0	1.88	1.66	0.42	88.12	87.37	72.86	63.28
Merged-chr4-134853963-3	chr4	134853862	134854062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-617.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	106.6	77.47	59.9	70.38	111.69	122.61	51.82	67.63	139.85	130.05	129.64	77.06
Merged-chr6-8509290-3	chr6	8509186	8509386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-125.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	216.43	232.66	270.97	256.6	261.42	275.32	190.0	329.78	291.1	263.1	418.57	154.13
Merged-chr11-59554858-3	chr11	59554754	59554954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12168.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	21.8	18.61	39.36	16.89	57.27	69.61	41.19	52.63	58.81	45.69	51.25	29.76
Merged-chrY-1245744-3	chrY	1245637	1245837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326683)	promoter-TSS (NM_001326683)	22.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	40.38	37.48	47.92	26.95	42.14	63.03	24.58	54.5	56.25	40.17	50.25	29.45
Merged-chr3-40705229-3	chr3	40705112	40705312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175515)	TTS (NM_175515)	-3659.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	16.15	13.83	37.08	41.43	58.09	33.55	100.32	126.56	53.89	40.67	80.9	57.95
Merged-chr11-115708153-1	chr11	115708053	115708253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008163, intron 1 of 5)	CpG	444.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	34.32	55.34	26.81	16.89	24.96	54.88	25.58	17.13	46.81	40.17	46.23	34.46
Merged-chr10-57784853-3	chr10	57784745	57784945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-78.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	57.74	67.16	74.16	75.21	100.64	102.54	133.86	107.44	88.71	135.57	114.57	48.24
Merged-chr2-104027772-3	chr2	104027673	104027873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020593)	promoter-TSS (NM_020593)	-26.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	73.09	64.64	65.03	72.8	84.28	104.11	55.47	93.2	107.0	97.41	120.09	70.48
Merged-chr7-35555959-3	chr7	35555844	35556044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033080)	promoter-TSS (NM_033080)	-16.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	20.19	21.88	19.97	17.7	21.68	23.52	24.91	19.09	33.24	30.63	46.23	22.24
Merged-chr5-25529771-3	chr5	25529662	25529862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-256.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	304.06	353.65	351.4	380.08	326.06	414.23	371.03	318.76	452.58	480.52	596.45	265.65
Merged-chr3-100440181-3	chr3	100440079	100440279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13774.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	32.71	27.92	65.6	47.06	52.77	29.16	43.85	94.6	95.98	64.27	111.05	62.34
Merged-chr14-45651860-1	chr14	45651760	45651960	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	6193.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.81	1.51	1.71	0.8	1.64	3.14	1.33	2.89	16.72	15.06	9.04	6.27
Merged-chr7-98362260-3	chr7	98362145	98362345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-917.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	40.78	32.45	32.52	24.94	47.46	45.15	30.23	31.4	42.29	43.68	37.18	15.04
Merged-chr16-21318424-3	chr16	21318309	21318509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14947.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	50.07	42.76	29.09	40.22	51.55	56.44	34.21	32.07	49.17	50.71	39.19	22.87
Merged-chr5-66138819-3	chr5	66138718	66138918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12160.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	47.24	58.86	57.62	52.69	70.37	71.18	49.49	76.82	58.81	44.19	78.89	35.09
Merged-chr4-108458725-3	chr4	108458627	108458827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	-699.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	29.07	25.4	45.64	27.75	41.73	51.74	35.54	50.86	54.29	49.71	63.31	38.53
Merged-chr1-90603410-3	chr1	90603329	90603529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	4.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	118.31	124.51	144.33	103.37	151.78	152.71	100.98	154.85	179.77	197.83	210.54	119.35
Merged-chr17-30005732-3	chr17	30005614	30005814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	675.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	48.86	50.56	55.9	37.81	29.86	68.67	27.24	23.66	53.7	71.8	58.79	30.07
Merged-chr14-118136999-3	chr14	118136855	118137055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021434)	promoter-TSS (NM_021434)	-172.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	127.6	113.44	142.61	130.71	199.23	199.43	155.79	215.1	204.95	234.99	281.39	139.09
Merged-chr19-7017892-3	chr19	7017768	7017968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1601.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	45.23	31.94	35.94	24.13	37.64	51.74	19.93	33.62	41.11	39.16	34.67	34.46
Merged-chr14-54776332-3	chr14	54776211	54776411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	5575.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	25.44	23.14	22.82	27.35	24.55	43.59	17.94	40.82	27.73	39.16	26.13	20.05
Merged-chr19-37018637-3	chr19	37018528	37018728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	92549.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	33.52	22.89	22.82	29.36	17.18	27.28	19.6	22.04	82.41	75.82	88.94	60.46
Merged-chr17-71118183-3	chr17	71118099	71118299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 33 of 36)	intron (NM_001083934, intron 33 of 36)	-65333.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	36.34	18.11	41.07	21.32	30.27	27.28	26.91	59.16	26.55	24.6	49.24	25.37
Merged-chr4-133813528-4	chr4	133813424	133813624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-59913.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	66.22	52.82	61.61	34.59	49.5	65.85	22.59	57.9	73.56	72.3	89.44	56.7
Merged-chr11-57962720-3	chr11	57962607	57962807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46357.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	25.04	26.16	29.09	19.71	38.05	30.73	21.26	23.97	35.99	30.13	43.21	20.36
Merged-chr1-14579604-3	chr1	14579530	14579730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176336.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	48.46	48.29	61.61	44.24	47.46	55.19	40.52	48.79	65.89	61.76	84.92	35.71
Merged-chr7-35750950-4	chr7	35750785	35750985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178704, intron 2 of 18)	intron (NM_178704, intron 2 of 18)	3569.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	5.65	8.05	14.83	10.86	12.68	15.37	14.62	14.66	11.21	9.54	12.56	9.4
Merged-chr5-110110085-3	chr5	110109995	110110195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	3.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	46.44	40.75	58.19	49.07	38.05	52.05	29.9	50.92	71.2	55.23	84.42	38.85
Merged-chr1-75521880-3	chr1	75521783	75521983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027886, intron 2 of 24)	CpG-327	354.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	34.73	43.01	49.06	63.15	34.77	50.8	42.85	31.96	35.01	61.76	40.7	36.65
Merged-chrX-140456580-3	chrX	140456477	140456677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021463)	promoter-TSS (NM_021463)	-26.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	29.48	26.16	47.92	35.8	34.77	51.74	19.6	41.07	35.01	48.7	53.26	22.56
Merged-chr4-135353269-3	chr4	135353166	135353366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-52.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	122.35	142.87	138.05	112.21	142.37	221.7	107.29	98.86	182.13	244.53	208.03	114.34
Merged-chr10-21608616-3	chr10	21608512	21608712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	15467.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	26.25	22.89	39.93	24.13	58.09	64.6	54.14	52.15	57.83	17.57	22.11	13.78
Merged-chr7-28702945-3	chr7	28702848	28703048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	9804.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	40.78	23.14	47.92	37.4	40.91	49.86	35.54	45.34	63.73	65.27	70.85	53.88
Merged-chr8-77452133-3	chr8	77452068	77452268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-64888.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	93.28	93.57	82.72	68.37	108.82	125.43	64.44	73.99	106.21	107.45	96.48	67.35
Merged-chr12-21373649-3	chr12	21373569	21373769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277266)	promoter-TSS (NM_001277266)	-37.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	140.12	152.17	141.47	140.37	159.14	184.07	136.52	167.86	201.41	198.83	283.9	98.68
Merged-chr17-7915066-3	chr17	7914964	7915164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10936.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	50.07	52.32	51.34	67.97	47.05	55.19	57.13	65.36	66.28	73.31	71.35	40.41
Merged-chr15-59831218-3	chr15	59831118	59831318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-36259.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	70.26	75.21	90.7	78.83	73.23	117.9	84.04	90.51	118.41	158.67	112.05	61.4
Merged-chr9-94691942-3	chr9	94691836	94692036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22044.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	144.56	109.41	163.15	160.08	121.5	159.92	131.87	177.76	171.32	138.08	217.57	117.79
Merged-chr1-82799158-3	chr1	82799067	82799267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102a|DNA|hAT-Charlie	-30711.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	19.79	18.36	19.97	22.52	39.27	36.37	26.91	32.07	25.18	41.17	43.21	32.89
Merged-chr15-3232766-3	chr15	3232658	3232858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38009.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	19.79	12.58	21.11	27.35	29.05	12.23	18.93	43.4	17.31	10.04	18.59	15.98
Merged-chr15-12204961-3	chr15	12204852	12205052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-76.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	333.54	329.0	306.91	395.76	385.78	416.74	402.92	486.9	416.78	436.83	602.48	261.89
Merged-chr19-9955056-3	chr19	9954962	9955162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25538.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	48.86	22.64	22.25	14.48	32.73	51.74	25.91	12.48	36.98	32.13	33.67	8.46
Merged-chr8-94363512-3	chr8	94363406	94363606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22923.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	17.36	14.34	27.95	24.53	41.32	39.2	23.58	29.24	30.09	31.63	50.75	17.54
Merged-chr7-47014784-3	chr7	47014699	47014899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6385.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	70.66	47.54	85.0	82.05	83.46	98.15	61.12	94.21	83.4	82.35	102.0	57.33
Merged-chr19-6980067-3	chr19	6979979	6980179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360288)	promoter-TSS (NM_001360288)	7.0	NM_001360286	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	248.33	216.06	267.54	250.17	252.83	356.22	214.58	215.58	309.19	355.49	343.7	177.62
Merged-chr13-33077312-5	chr13	33077240	33077440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6763.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	19.79	25.66	39.36	34.19	18.41	20.7	32.22	24.62	101.1	68.29	113.06	64.22
Merged-chr17-31801026-2	chr17	31800917	31801117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	54787.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	18.17	19.37	33.09	18.5	0.0	0.0	0.0	0.0	21.64	25.11	55.27	13.78
Merged-chr18-58531451-3	chr18	58531358	58531558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24782.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	40.78	43.77	92.41	62.74	67.5	53.62	72.08	93.95	70.81	70.29	106.53	64.53
Merged-chr6-140819612-3	chr6	140819493	140819693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	192708.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	28.27	13.58	34.8	21.72	28.64	24.46	29.23	38.05	38.94	27.11	44.22	21.93
Merged-chr5-76529276-3	chr5	76529183	76529383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027270)	promoter-TSS (NM_027270)	-24.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	113.87	92.06	111.24	90.09	131.73	116.34	105.96	118.01	132.17	155.15	199.99	111.52
Merged-chr11-101316171-3	chr11	101316069	101316269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011192)	promoter-TSS (NM_011192)	-44.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	24.23	27.92	17.11	23.73	32.73	25.4	8.97	16.77	31.27	30.63	19.6	25.06
Merged-chr7-127209004-3	chr7	127208904	127209104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	105.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	229.76	262.85	258.99	267.87	240.55	303.85	225.21	213.03	324.93	387.12	333.15	197.04
Merged-chr1-86358920-4	chr1	86358833	86359033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	522.0	NM_010880	17975.0	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	39.57	56.59	26.24	26.14	34.36	41.39	32.22	30.64	60.19	70.29	47.74	42.92
Merged-chr6-121341905-3	chr6	121341820	121342020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1156.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	24.63	35.97	22.82	24.94	28.64	29.48	38.53	27.06	43.66	43.18	41.2	29.13
Merged-chr12-85108818-3	chr12	85108720	85108920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2013.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	25.04	19.87	34.8	28.96	34.77	38.57	25.91	43.29	26.55	24.6	31.66	22.24
Merged-chr5-140702297-3	chr5	140702214	140702414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	64.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	26.65	19.87	23.39	25.34	44.18	39.51	25.58	35.64	51.34	49.71	41.2	25.06
Merged-chr4-59009346-3	chr4	59009248	59009448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	6155.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	21.0	42.51	47.35	46.25	31.09	52.05	41.19	47.1	37.96	28.12	23.62	25.06
Merged-chr9-104063708-3	chr9	104063584	104063784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	-19.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	43.61	32.45	37.08	26.95	58.5	78.08	40.52	53.41	76.51	81.84	87.43	44.17
Merged-chr12-114378954-1	chr12	114378854	114379054	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	90512.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	54.88	44.19	62.31	32.89
Merged-chr15-75709398-3	chr15	75709286	75709486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163465, intron 4 of 14)	MIR3|SINE|MIR	5098.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	34.32	25.4	31.95	23.33	22.09	44.21	14.95	24.11	46.81	32.64	44.72	17.23
Merged-chr11-80168795-3	chr11	80168753	80168953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	MLT1O|LTR|ERVL-MaLR	14691.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	24.63	25.91	29.09	24.53	25.36	29.79	32.55	19.46	29.11	26.11	41.2	27.88
Merged-chr6-39810956-3	chr6	39810843	39811043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010930)	promoter-TSS (NM_001010930)	-7.0	NM_001010930	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	99.33	85.77	88.42	101.35	104.73	118.53	83.71	125.83	126.47	109.96	175.87	83.33
Merged-chr8-41240100-3	chr8	41239999	41240199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 1 of 37)	CpG	340.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	47.24	37.73	21.11	37.4	55.23	60.83	59.46	51.7	64.12	51.72	93.46	46.99
Merged-chr6-113752448-3	chr6	113752329	113752529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11748.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	27.86	22.64	23.96	33.38	33.55	47.66	22.92	34.26	35.4	19.58	29.14	21.93
Merged-chr18-9492271-3	chr18	9492177	9492377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-42123.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	31.9	16.35	24.53	31.37	56.05	38.26	48.16	71.66	47.01	36.15	45.73	28.51
Merged-chr10-95298031-3	chr10	95297917	95298117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25692.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	62.99	45.53	39.93	37.81	60.14	47.04	46.17	57.28	64.71	59.25	68.84	40.72
Merged-chr8-4678469-3	chr8	4678370	4678570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	65300.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	114.68	85.27	130.06	69.98	92.05	119.47	86.7	64.21	187.84	153.14	182.9	104.63
Merged-chr11-102556323-3	chr11	102556237	102556437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159492)	promoter-TSS (NM_001159492)	-179.0	NM_001159492	237943.0	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	41.19	56.59	48.49	40.62	49.91	77.45	34.88	36.62	69.63	71.3	62.31	35.4
Merged-chr6-115668239-3	chr6	115668122	115668322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	7666.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	27.05	25.15	29.66	9.65	49.91	86.86	38.53	44.83	46.03	61.76	39.19	17.86
Merged-chr2-124649207-3	chr2	124649115	124649315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	RMER15|LTR|ERVL	-4366.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	34.32	14.59	26.81	20.11	33.55	43.59	22.59	33.48	46.62	39.16	35.17	18.17
Merged-chr17-72939677-2	chr17	72939581	72939781	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	21376.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.04	6.79	22.82	8.45	31.09	23.2	16.28	20.02	18.29	17.57	26.13	15.04
Merged-chr5-33009947-3	chr5	33009860	33010060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8856.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	71.07	63.64	104.39	108.59	92.46	115.71	65.11	92.41	72.77	91.38	122.1	51.69
Merged-chr4-150087272-3	chr4	150087205	150087405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-198.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	122.75	99.61	111.24	142.38	139.5	172.15	144.16	170.41	163.84	186.78	177.88	112.15
Merged-chr2-120348312-3	chr2	120348210	120348410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	4823.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	45.63	28.67	26.81	25.34	49.91	45.47	27.57	60.87	49.96	37.16	48.24	33.83
Merged-chr1-191312801-3	chr1	191312720	191312920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	5298.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	31.9	40.75	25.1	38.21	32.73	47.35	35.21	38.5	65.69	59.75	90.95	54.51
Merged-chr4-32250454-3	chr4	32250336	32250536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-166999.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	124.37	108.41	98.12	149.22	130.09	157.73	122.24	138.76	139.45	156.15	159.29	79.88
Merged-chr5-101999246-3	chr5	101999170	101999370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70651.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	38.36	34.96	43.93	44.64	79.37	76.2	72.75	100.46	43.07	49.71	45.22	31.33
Merged-chr7-43671874-3	chr7	43671786	43671986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-145.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	132.04	135.57	151.74	188.63	161.6	183.13	133.53	156.93	179.38	159.17	286.42	128.75
Merged-chr2-178023211-3	chr2	178023131	178023331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-53.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	18.17	11.82	13.69	26.55	38.86	27.59	27.24	26.58	66.09	52.72	72.36	44.17
Merged-chr3-116893104-3	chr3	116893011	116893211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009146, intron 9 of 16)	MTD|LTR|ERVL-MaLR	31431.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	32.71	47.29	73.02	58.32	38.86	52.68	48.16	59.92	84.58	104.44	89.44	67.04
Merged-chr3-116857835-3	chr3	116857728	116857928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1739.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	37.96	33.7	24.53	33.78	56.87	56.13	33.22	43.71	68.64	50.21	54.27	35.09
Merged-chr4-43383415-3	chr4	43383323	43383523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1441.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	23.02	22.39	23.39	34.59	35.59	34.18	20.26	31.6	36.58	22.59	32.66	16.6
Merged-chr10-93477031-3	chr10	93476936	93477136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-11732.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	68.24	26.41	76.44	68.78	72.41	80.59	92.01	103.43	40.71	20.08	45.73	19.11
Merged-chr5-117976760-3	chr5	117976692	117976892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145564)	promoter-TSS (NM_145564)	22.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	22.21	22.89	25.67	14.88	32.73	28.54	29.23	27.22	24.0	25.61	38.19	24.12
Merged-chr8-71296480-3	chr8	71296337	71296537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	23723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	37.55	47.29	45.64	53.09	70.77	70.24	41.85	58.04	46.81	57.74	62.81	33.83
Merged-chr9-40781412-3	chr9	40781327	40781527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	62.18	31.94	40.5	47.86	69.14	53.31	19.27	37.23	58.61	53.73	48.24	29.76
Merged-chr19-45560688-3	chr19	45560594	45560794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020032)	promoter-TSS (NM_020032)	109.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	39.17	53.07	34.23	41.43	38.46	43.27	49.83	35.02	38.35	36.15	35.17	26.0
Merged-chr3-97610144-3	chr3	97610027	97610227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	63.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	37.96	67.91	79.86	82.45	59.32	68.67	84.04	55.18	46.62	57.74	65.83	40.72
Merged-chr1-13660603-3	chr1	13660514	13660714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145381)	promoter-TSS (NM_145381)	-105.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	108.22	97.34	119.23	133.93	122.73	143.62	101.98	156.45	166.4	136.07	233.65	92.41
Merged-chr8-72421591-3	chr8	72421503	72421703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289859)	promoter-TSS (NM_001289859)	-129.0	NM_001289859	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	224.51	212.54	200.23	275.51	227.05	262.46	162.76	186.87	275.36	312.31	303.0	178.56
Merged-chr5-96898364-3	chr5	96898248	96898448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22924.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	32.3	31.19	75.3	51.88	50.32	68.36	81.05	86.47	48.19	45.69	67.33	38.53
Merged-chr9-40321663-3	chr9	40321577	40321777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357622)	promoter-TSS (NM_001357622)	-354.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	214.82	218.07	286.94	261.43	196.78	288.17	281.68	300.9	272.41	258.58	382.89	150.05
Merged-chr7-38228022-3	chr7	38227930	38228130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024413)	promoter-TSS (NM_024413)	-36.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	62.18	42.51	57.05	55.5	78.14	63.34	61.45	100.23	103.46	71.3	118.59	59.21
Merged-chr9-106476215-3	chr9	106476099	106476299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145619, intron 1 of 10)	intron (NM_145619, intron 1 of 10)	750.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	23.02	24.15	23.96	11.66	29.86	29.48	18.93	18.14	26.16	26.11	26.63	16.92
Merged-chr3-116513082-3	chr3	116512983	116513183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357344)	promoter-TSS (NM_001357344)	13.0	NM_010022	13171.0	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	BCKAD-E2|D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	41.99	40.24	39.36	38.21	55.64	61.46	41.85	62.97	45.04	48.2	133.16	36.03
Merged-chr10-7847316-4	chr10	7847284	7847484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	11003.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	18.57	14.09	21.68	20.51	13.5	15.37	18.27	19.85	10.62	16.57	20.6	11.28
Merged-chr10-50592693-3	chr10	50592600	50592800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	31.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	189.38	148.4	126.64	138.36	204.14	234.55	172.06	177.84	230.52	257.08	306.51	156.01
Merged-chr11-65806607-3	chr11	65806513	65806713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-562.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	63.8	46.28	66.74	53.09	84.28	77.77	44.51	84.67	82.22	94.9	83.41	39.16
Merged-chr1-54810324-3	chr1	54810221	54810421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	116066.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	62.99	75.46	50.77	41.43	65.05	108.18	64.11	54.17	78.68	63.77	89.44	28.51
Merged-chr3-105053069-3	chr3	105052992	105053192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163332)	promoter-TSS (NM_001163332)	54.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	93.28	73.95	99.26	98.54	85.5	87.8	74.74	99.48	114.87	118.5	119.09	72.68
Merged-chr2-14204420-3	chr2	14204320	14204520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-24994.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	23.82	22.64	21.11	34.59	47.46	21.32	37.2	39.14	17.31	23.1	34.67	30.39
Merged-chr2-150823203-3	chr2	150823093	150823293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153781, intron 14 of 19)	ORR1F|LTR|ERVL-MaLR	19377.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	16.15	21.38	27.95	23.73	45.82	53.93	27.24	39.98	38.94	41.17	34.17	24.75
Merged-chr5-76589004-1	chr5	76588904	76589104	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2710.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	18.57	35.21	17.68	31.77	24.96	15.68	17.61	26.66	31.47	42.68	43.21	23.49
Merged-chr11-34783856-3	chr11	34783741	34783941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033374)	promoter-TSS (NM_033374)	64.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	34.73	23.39	18.83	28.56	47.46	28.85	31.22	40.29	36.39	27.62	39.19	20.99
Merged-chr6-72362520-3	chr6	72362428	72362628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331173)	promoter-TSS (NM_001331173)	-96.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	165.56	150.41	144.33	164.5	181.23	246.78	132.54	174.25	187.44	189.29	219.08	120.29
Merged-chr3-90265731-3	chr3	90265632	90265832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	497.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	235.01	283.98	258.99	285.16	242.19	340.54	262.08	267.95	284.21	300.76	387.41	164.46
Merged-chr7-134690409-3	chr7	134690299	134690499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19712.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	16.15	17.1	22.25	8.45	20.86	29.48	17.94	17.33	31.86	39.16	33.16	17.54
Merged-chr2-102812967-3	chr2	102812879	102813079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177785, exon 16 of 16)	3' UTR (NM_001177785, exon 16 of 16)	-66219.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	14.54	19.12	34.23	37.4	33.14	32.93	34.21	41.69	43.66	35.15	60.3	34.77
Merged-chr11-106789239-3	chr11	106789093	106789293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	-8.0	NM_001355677	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	101.76	107.15	69.03	78.03	92.05	128.88	62.12	70.99	113.69	116.99	127.63	82.7
Merged-chr1-171380044-3	chr1	171379931	171380131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	-8929.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	53.3	47.54	67.88	52.29	67.91	93.76	52.15	49.43	53.5	58.75	66.33	36.34
Merged-chr10-43641342-3	chr10	43641228	43641428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47901.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	38.76	19.87	44.5	28.56	36.0	31.04	28.57	37.37	26.55	22.59	45.22	34.15
Merged-chr13-43304279-3	chr13	43304186	43304386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033399)	promoter-TSS (NM_001033399)	-114.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	48.05	29.18	19.97	37.0	37.64	45.78	40.19	64.04	49.17	46.19	77.88	50.75
Merged-chr13-95848115-1	chr13	95848015	95848215	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	Lx8|LINE|L1	43807.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.04	1.26	1.14	0.8	3.27	0.0	3.32	4.15	29.31	18.58	20.1	12.84
Merged-chr19-34199670-3	chr19	34199552	34199752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6718.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	29.48	43.51	31.95	39.42	64.64	45.47	26.57	58.23	57.83	52.22	68.34	38.85
Merged-chrX-155177375-3	chrX	155177255	155177455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29506.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	37.15	30.94	38.79	30.57	40.91	35.43	49.16	59.83	37.76	25.61	54.27	23.18
Merged-chr11-113738061-3	chr11	113737939	113738139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	13121.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	36.75	20.88	36.51	29.76	28.64	24.15	20.26	28.54	25.77	29.62	42.71	19.11
Merged-chr17-39847916-3	chr17	39847786	39847986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	4889.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	832.63	1026.99	900.18	793.54	272.05	350.57	215.91	171.03	261.4	284.69	292.44	342.4
Merged-chr16-38089327-2	chr16	38089225	38089425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	-65.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	214.01	226.38	261.27	206.33	207.42	300.4	206.28	216.14	312.34	357.0	362.79	177.0
Merged-chr5-74126683-3	chr5	74126584	74126784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33154.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	25.04	20.88	66.74	46.25	86.73	93.44	89.02	135.51	37.57	76.82	83.91	50.44
Merged-chr11-40754752-2	chr11	40754672	40754872	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009831, intron 1 of 5)	intron (NM_009831, intron 1 of 5)	514.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	8.08	12.83	9.13	14.88	13.5	14.74	17.61	20.86	7.47	17.07	25.63	14.1
Merged-chr11-85250530-2	chr11	85250400	85250600	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15334.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	1.62	0.5	1.71	5.63	38.86	35.12	49.83	41.19	24.98	39.16	24.62	17.23
Merged-chr14-20674288-3	chr14	20674196	20674396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168273)	promoter-TSS (NM_001168273)	-25.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	75.11	59.36	78.72	63.55	78.55	98.15	47.83	71.8	115.65	84.35	106.02	44.48
Merged-chr13-112398308-3	chr13	112398214	112398414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65756.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	94.49	71.94	67.88	79.64	98.18	98.78	57.47	64.09	102.87	111.97	122.1	65.16
Merged-chr8-33653465-3	chr8	33653383	33653583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010344, exon 1 of 13)	5' UTR (NM_010344, exon 1 of 13)	245.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	77.12	48.29	51.34	63.15	57.68	70.55	45.18	71.8	87.92	85.36	151.25	69.23
Merged-chr5-115538836-3	chr5	115538735	115538935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-20632.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	71.07	61.37	65.03	45.05	74.46	86.55	57.13	66.67	89.89	82.35	108.03	60.46
Merged-chr19-5567632-3	chr19	5567559	5567759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033448)	promoter-TSS (NM_001033448)	-365.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	48.05	42.76	45.64	47.86	49.5	44.21	26.91	30.06	67.07	76.82	50.75	56.7
Merged-chr16-21794351-3	chr16	21794227	21794427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-20.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	104.99	91.05	98.12	83.66	96.96	128.88	62.12	103.57	127.06	135.07	132.15	59.52
Merged-chr8-106210940-3	chr8	106210847	106211047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007567)	promoter-TSS (NM_001007567)	-14.0	NR_152744	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	109.43	112.94	136.91	105.78	117.41	130.13	82.05	103.35	127.26	103.43	152.75	69.55
Merged-chr2-26352118-3	chr2	26352020	26352220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-10.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	54.11	64.39	42.21	28.15	51.14	51.11	31.22	42.98	67.86	64.77	50.75	35.09
Merged-chr8-83742414-3	chr8	83742323	83742523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1112.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	109.43	92.81	120.94	130.71	157.91	129.51	114.6	104.86	110.93	133.06	140.19	94.29
Merged-chr5-121452503-3	chr5	121452411	121452611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	-37.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	128.41	121.49	115.23	110.2	126.0	174.03	100.98	99.51	152.63	172.22	161.3	95.55
Merged-chr1-131867259-3	chr1	131867147	131867347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-30.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	85.6	60.37	73.59	64.75	51.55	87.8	33.88	62.41	82.61	87.87	125.62	60.15
Merged-chr4-102570476-3	chr4	102570368	102570568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	408.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	116.7	106.4	170.0	96.53	117.41	165.88	135.53	108.95	158.33	163.18	190.94	87.71
Merged-chr7-97081593-3	chr7	97081465	97081665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-186.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	67.43	57.85	80.43	43.84	63.41	55.5	58.79	73.79	88.71	67.78	90.45	47.3
Merged-chr6-100833558-3	chr6	100833454	100833654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182939)	promoter-TSS (NM_182939)	-84.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	65.01	55.08	53.62	48.26	83.87	84.98	59.46	97.99	112.31	80.84	134.16	68.29
Merged-chr11-48834471-3	chr11	48834367	48834567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053166, intron 1 of 6)	tRNA-Ala-GCG|tRNA|tRNA	-3004.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	38.76	29.68	43.35	35.39	39.68	41.71	24.25	25.6	55.66	37.16	34.67	28.82
Merged-chr11-113334664-3	chr11	113334546	113334746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-124977.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	19.79	15.59	30.23	25.34	92.87	71.49	57.47	72.03	24.59	24.6	36.18	19.42
Merged-chr5-136083890-3	chr5	136083807	136084007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133914)	promoter-TSS (NM_133914)	-9.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	121.95	119.22	116.94	107.39	139.91	148.01	96.99	122.02	167.58	157.16	197.48	97.74
Merged-chr12-100187595-3	chr12	100187502	100187702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-366.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	193.01	169.28	192.81	205.52	201.69	260.58	150.81	208.96	216.16	238.5	277.37	156.63
Merged-chr8-122576890-3	chr8	122576777	122576977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009698)	promoter-TSS (NM_009698)	30.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	67.84	47.54	55.33	57.51	61.37	64.6	43.85	62.05	53.5	69.79	62.31	34.77
Merged-chr15-79408939-3	chr15	79408851	79409051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5648.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	31.9	25.66	35.94	22.12	49.5	54.88	35.54	50.83	40.91	22.59	35.17	22.56
Merged-chr10-40477088-3	chr10	40476984	40477184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198164, intron 10 of 11)	intron (NM_198164, intron 10 of 11)	-93278.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	21.0	27.17	49.63	47.86	52.37	50.17	39.53	62.38	45.24	38.66	44.72	36.03
Merged-chr17-27133907-3	chr17	27133816	27134016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026063)	promoter-TSS (NM_026063)	-25.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	35.53	26.66	36.51	18.1	33.14	42.33	17.94	26.02	46.42	68.29	46.73	34.46
Merged-chr18-62073880-3	chr18	62073770	62073970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	106111.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	41.59	38.48	52.48	51.88	42.96	33.87	48.5	47.92	27.73	24.6	53.26	18.8
Merged-chr1-88587565-3	chr1	88587461	88587661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36044.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	227.74	223.11	288.08	303.26	316.24	312.32	237.5	292.09	303.1	309.3	426.61	260.01
Merged-chr1-84426815-3	chr1	84426698	84426898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-142153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	32.3	19.87	38.79	49.07	28.23	23.2	29.56	35.41	41.11	28.12	28.64	28.19
Merged-chr11-65807176-3	chr11	65807073	65807273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-2.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	103.78	94.32	92.98	88.89	106.37	134.84	87.36	105.73	165.41	162.68	225.61	94.61
Merged-chr12-16894078-3	chr12	16893987	16894187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-891.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	88.43	64.14	109.53	93.31	103.91	121.35	87.03	122.78	109.75	96.4	134.16	60.46
Merged-chr11-95824316-3	chr11	95824166	95824366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-234.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	104.99	117.97	102.11	117.44	119.05	153.96	115.6	107.66	103.65	127.53	105.52	94.92
Merged-chr14-54768522-3	chr14	54768430	54768630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	13356.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	90.05	113.44	104.39	73.6	110.05	145.81	119.25	100.57	125.68	151.13	156.77	59.52
Merged-chr12-108765064-3	chr12	108764975	108765175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28236.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	38.36	39.74	52.48	39.82	60.14	74.63	54.81	82.91	63.53	48.7	76.88	41.35
Merged-chr8-4259264-3	chr8	4259125	4259325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183315)	promoter-TSS (NM_183315)	49.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	37.96	35.21	38.79	47.06	49.09	47.66	53.48	53.61	49.96	49.21	80.9	41.35
Merged-chr14-73410288-3	chr14	73410179	73410379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24990.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	27.05	25.91	23.39	22.12	36.41	38.26	17.27	24.14	31.86	33.64	45.73	21.62
Merged-chr16-39431743-3	chr16	39431654	39431854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-242804.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	55.32	45.53	40.5	57.11	108.41	126.68	70.42	135.06	93.23	77.32	116.07	53.57
Merged-chr15-4027423-3	chr15	4027318	4027518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-12.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	100.14	77.22	68.45	88.08	92.46	91.88	69.76	102.36	99.13	84.86	141.2	56.39
Merged-chr3-136725555-4	chr3	136725419	136725619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	55453.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	12.92	8.3	16.54	16.89	11.05	4.7	15.28	17.33	14.55	21.09	17.08	22.87
Merged-chr7-101550850-3	chr7	101550756	101550956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4946.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	40.78	45.02	43.35	41.02	43.36	49.23	42.52	27.7	72.38	63.27	49.24	29.13
Merged-chr17-15527298-3	chr17	15527194	15527394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	7.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	88.43	67.16	94.13	98.94	99.41	127.94	95.0	118.09	144.17	100.92	175.37	67.67
Merged-chr6-29278701-3	chr6	29278608	29278808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2433.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	17.36	13.33	5.7	17.7	25.36	22.89	29.9	15.48	20.85	27.62	22.11	16.6
Merged-chr14-102835446-5	chr14	102835342	102835542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	147190.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	19.38	22.13	21.68	34.59	25.77	32.93	47.17	32.02	31.27	42.18	46.73	27.88
Merged-chr15-89315350-3	chr15	89315255	89315455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170561)	promoter-TSS (NM_001170561)	-44.0	NM_001170561	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	140.52	111.18	135.77	123.07	154.64	162.12	92.01	150.98	164.63	132.56	219.58	77.69
Merged-chr9-35210425-3	chr9	35210343	35210543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	612.0	NM_172291	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	28.67	22.89	19.4	28.56	34.77	32.93	26.91	43.63	36.78	54.73	49.75	31.64
Merged-chr3-88043087-3	chr3	88042994	88043194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110809)	promoter-TSS (NM_001110809)	-12.0	NM_025663	66614.0	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	43.61	34.71	33.66	43.44	31.91	43.59	21.59	38.78	49.96	49.71	43.21	41.04
Merged-chr16-90283734-3	chr16	90283638	90283838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	CpG	748.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	19.79	18.61	22.82	29.76	20.46	30.1	32.22	18.31	34.42	18.08	43.21	41.98
Merged-chr1-165672695-3	chr1	165672574	165672774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	MLTR11B|LTR|ERVK	35420.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	46.84	46.28	54.76	69.58	68.32	89.68	108.29	101.58	75.33	86.36	144.71	65.79
Merged-chrX-42149100-3	chrX	42148999	42149199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077712)	promoter-TSS (NM_001077712)	-313.0	NM_001077712	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	103.78	92.56	88.42	83.26	106.37	123.55	114.6	93.9	125.09	170.72	176.87	83.64
Merged-chr15-100728752-3	chr15	100728663	100728863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	613.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	87.62	68.16	82.15	85.27	77.73	79.96	52.48	71.36	89.69	86.36	109.54	73.3
Merged-chr18-53176264-3	chr18	53176185	53176385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026386)	promoter-TSS (NM_026386)	-7.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	88.43	107.4	97.55	59.12	116.19	111.32	80.72	92.64	143.39	165.69	174.86	90.22
Merged-chr3-130709316-3	chr3	130709204	130709404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025509, exon 1 of 4)	exon (NM_025509, exon 1 of 4)	140.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	37.96	66.15	49.63	67.17	70.77	57.38	67.1	72.31	65.3	71.8	67.84	48.56
Merged-chr5-121593603-3	chr5	121593487	121593687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001308450, exon 1 of 11)	5' UTR (NM_001308450, exon 1 of 11)	237.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	31.9	30.43	34.8	36.2	39.68	19.13	36.54	37.99	35.99	31.13	53.77	22.87
Merged-chr14-78699247-1	chr14	78699147	78699347	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	33482.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	7.67	4.28	5.7	7.64	18.0	27.28	15.61	11.38	2.75	6.03	3.01	0.0
Merged-chr10-96466166-3	chr10	96466078	96466278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-150823.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	46.84	43.01	71.88	52.29	74.46	100.66	83.04	80.75	70.81	68.79	72.86	22.56
Merged-chr6-148214943-3	chr6	148214860	148215060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015615, intron 1 of 1)	intron (NR_015615, intron 1 of 1)	-2586.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	34.32	21.88	30.23	44.64	36.82	43.59	15.61	32.19	39.73	20.08	62.31	29.45
Merged-chr19-6241576-3	chr19	6241474	6241674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-94.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	218.45	248.51	188.25	204.32	244.64	321.41	196.98	203.33	246.25	289.21	234.66	145.04
Merged-chr1-77868094-3	chr1	77868013	77868213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	329023.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	13.33	19.62	38.22	30.57	29.46	35.75	24.58	59.13	37.96	41.17	50.25	21.93
Merged-chr4-43508809-3	chr4	43508724	43508924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-77.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	41.19	35.72	51.91	41.43	71.18	64.6	35.54	54.36	61.17	58.75	70.35	34.46
Merged-chr10-80148921-3	chr10	80148831	80149031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	659.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	108.22	104.89	120.37	102.56	87.55	115.71	75.4	75.93	147.52	140.59	150.74	98.05
Merged-chr2-126876268-3	chr2	126876156	126876356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021450)	promoter-TSS (NM_021450)	5.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	80.76	98.1	82.72	62.34	86.32	122.29	57.47	85.99	110.34	147.62	112.56	88.65
Merged-chr7-140999051-2	chr7	140998966	140999166	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11678.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	14.54	16.1	23.96	24.94	20.46	23.52	17.27	27.14	23.21	26.61	21.1	21.62
Merged-chr16-21640968-4	chr16	21640858	21641058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	53707.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	14.13	15.34	45.64	30.16	27.82	32.3	31.56	50.07	29.11	39.16	42.71	24.75
Merged-chr9-25251992-4	chr9	25251884	25252084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	-7.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	33.52	36.22	13.12	27.75	25.77	44.53	43.18	31.68	35.99	53.22	50.75	40.72
Merged-chr6-37615282-3	chr6	37615195	37615395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85122.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	23.82	33.45	46.78	42.63	31.91	17.25	23.58	46.93	29.9	26.11	50.25	29.76
Merged-chr12-85381817-3	chr12	85381715	85381915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-7098.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	51.28	37.23	59.9	65.16	78.96	81.84	57.13	74.47	57.63	67.78	94.97	44.8
Merged-chr10-123197034-3	chr10	123196958	123197158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-39.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	67.84	66.4	76.44	53.89	86.32	79.96	53.81	65.19	88.31	77.32	92.96	56.7
Merged-chr2-80025197-3	chr2	80025097	80025297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13705.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	108.22	106.4	101.54	80.44	159.14	171.52	83.37	123.06	210.65	188.29	120.6	99.31
Merged-chr14-21052530-3	chr14	21052416	21052616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134079)	promoter-TSS (NM_134079)	-58.0	NM_134079	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	119.93	102.37	114.66	129.51	146.87	171.84	84.37	134.8	188.43	177.24	222.1	97.43
Merged-chr17-15704715-3	chr17	15704631	15704831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-236.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	126.79	156.7	145.47	135.94	146.05	158.04	201.63	137.1	129.62	156.66	174.36	110.9
Merged-chr5-8357436-3	chr5	8357339	8357539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	10721.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	196.65	144.38	228.75	262.64	205.78	139.54	198.97	254.5	173.28	177.75	249.73	161.02
Merged-chr19-34521593-3	chr19	34521484	34521684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5890.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	37.96	49.3	51.91	45.45	48.68	58.64	42.85	63.2	71.2	48.2	46.73	42.6
Merged-chr6-83005055-3	chr6	83004954	83005154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	28417.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	131.64	107.4	126.07	143.59	135.82	132.64	85.7	137.97	118.21	101.93	168.33	88.65
Merged-chr8-91344861-3	chr8	91344769	91344969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	31344.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	27.05	21.38	18.25	26.55	32.73	37.32	17.27	32.33	25.37	32.13	38.19	21.3
Merged-chr9-21014822-3	chr9	21014736	21014936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1104.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	25.44	32.2	40.5	22.52	33.14	59.27	26.24	20.33	39.93	51.21	55.78	19.74
Merged-chr10-117876677-3	chr10	117876563	117876763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30689.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	46.03	31.69	58.19	43.04	58.91	62.09	32.88	48.67	65.89	70.8	58.79	50.75
Merged-chr10-81000021-3	chr10	80999929	81000129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	1336.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	64.2	50.31	25.67	34.99	67.09	87.17	35.21	45.7	85.36	65.78	73.86	40.72
Merged-chr17-34143196-3	chr17	34143100	34143300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2216.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	128.41	109.41	119.23	139.56	124.78	132.95	76.07	90.51	136.11	125.02	138.18	76.75
Merged-chr17-71002240-1	chr17	71002140	71002340	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	293.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	70.66	50.81	65.03	27.75	51.55	79.02	32.22	56.41	99.13	126.03	114.57	69.55
Merged-chr1-182125196-3	chr1	182125095	182125295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012058, intron 1 of 2)	CpG	458.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	31.5	28.42	23.39	18.9	67.91	77.14	72.41	66.98	72.97	70.29	114.06	56.39
Merged-chr10-20347760-3	chr10	20347668	20347868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027930)	promoter-TSS (NM_027930)	-51.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	41.59	41.5	42.21	44.64	45.0	38.88	44.18	42.67	50.55	44.69	71.35	36.34
Merged-chr10-67204739-1	chr10	67204639	67204839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	18989.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	21.0	11.82	15.97	17.7	18.41	9.09	28.9	20.13	18.49	7.53	13.06	13.78
Merged-chr4-57947765-1	chr4	57947665	57947865	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8646.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	9.69	12.83	22.25	12.87	19.23	27.28	15.28	24.22	24.19	24.6	30.65	16.6
Merged-chr12-69724944-3	chr12	69724838	69725038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145443)	promoter-TSS (NM_145443)	-7.0	NM_001361691	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	117.5	90.3	119.8	114.22	132.96	131.39	95.33	158.3	136.11	154.15	187.93	104.94
Merged-chr5-65493392-3	chr5	65493282	65493482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-547.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	43.21	36.22	43.93	31.77	33.55	60.83	37.2	62.19	74.15	72.81	80.9	36.03
Merged-chr4-41275048-1	chr4	41274948	41275148	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	87.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	26.25	14.84	19.97	13.27	23.32	29.16	19.6	14.52	20.46	17.57	14.57	15.04
Merged-chr2-181581189-3	chr2	181581101	181581301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164597)	TTS (NM_001164597)	772.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	36.34	42.01	78.72	49.07	45.82	62.09	25.58	55.04	66.48	78.83	61.3	55.45
Merged-chr1-58586272-3	chr1	58586184	58586384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025597)	promoter-TSS (NM_025597)	49.0	NM_001310598	213056.0	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	25.44	18.61	45.64	20.91	25.36	32.61	13.95	20.69	50.94	29.12	44.72	24.75
Merged-chr8-25785276-3	chr8	25785149	25785349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026121)	promoter-TSS (NM_026121)	-40.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	142.54	91.3	115.23	95.32	126.82	130.13	83.71	144.25	130.99	166.2	176.87	105.88
Merged-chr6-147042791-3	chr6	147042700	147042900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	30.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	46.03	29.93	39.36	49.87	60.55	55.82	39.53	68.3	64.91	66.28	72.86	37.59
Merged-chr4-132422160-2	chr4	132422077	132422277	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161797, intron 1 of 12)	CpG	269.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	39.98	25.4	22.25	20.11	36.0	37.63	23.58	22.51	40.52	39.67	45.22	29.76
Merged-chr9-85327857-3	chr9	85327748	85327948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-698.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	65.41	71.43	77.58	83.66	67.09	105.67	75.4	67.6	121.16	122.01	151.25	84.58
Merged-chr19-6921347-3	chr19	6921228	6921428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	480.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	23.02	22.64	9.13	24.13	19.64	21.95	20.59	13.65	29.5	25.11	26.63	16.29
Merged-chr5-86068499-3	chr5	86068427	86068627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2944.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	16.15	17.36	13.69	17.29	25.36	18.81	23.58	25.37	26.16	25.61	28.14	11.9
Merged-chr17-70709376-2	chr17	70709259	70709459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	137418.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	16.56	20.12	26.81	6.44	27.41	22.89	8.64	11.1	3.34	3.01	1.51	2.51
Merged-chr2-90528313-3	chr2	90528207	90528407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-49133.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	47.65	44.27	42.21	20.51	49.91	88.11	52.15	31.32	83.99	79.83	80.9	37.91
Merged-chr4-129514510-3	chr4	129514400	129514600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010807, intron 1 of 1)	CpG	919.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	84.39	116.71	44.5	23.33	50.32	118.84	33.55	15.39	73.56	131.05	80.4	30.07
Merged-chr16-76226685-3	chr16	76226585	76226785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104072.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	56.94	55.34	37.65	32.98	53.18	113.2	31.22	36.31	89.89	57.24	83.41	19.42
Merged-chr12-87407652-3	chr12	87407546	87407746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19291.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	25.04	20.88	38.79	45.45	44.59	45.15	44.18	40.57	47.4	43.18	64.32	32.27
Merged-chr3-94886951-3	chr3	94886878	94887078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008945)	promoter-TSS (NM_008945)	-20.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	32.3	19.62	12.55	16.09	25.77	25.09	16.61	31.09	40.32	32.64	28.64	21.62
Merged-chr5-34336299-3	chr5	34336199	34336399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	49.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	129.21	123.0	100.97	141.17	126.82	191.91	102.31	102.93	171.91	178.25	152.75	83.96
Merged-chr19-10694086-3	chr19	10693988	10694188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	5353.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	105.79	92.31	111.24	111.01	110.05	99.09	72.75	94.09	90.87	90.88	85.42	59.21
Merged-chr14-30626392-4	chr14	30626275	30626475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-167.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	51.28	82.75	50.2	53.89	63.41	113.83	69.42	38.61	63.73	97.91	52.26	31.01
Merged-chr4-34886740-3	chr4	34886674	34886874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3826.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	22.21	47.79	34.8	58.72	45.0	39.2	71.08	54.73	31.47	24.1	39.7	21.62
Merged-chr15-6601484-3	chr15	6601362	6601562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	21615.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	52.9	46.53	31.95	57.92	31.5	49.54	46.5	47.19	48.98	48.2	33.16	33.52
Merged-chr14-45685453-3	chr14	45685348	45685548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27305.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	100.14	105.39	115.23	70.38	101.46	152.71	95.67	86.02	91.26	87.37	82.91	49.81
Merged-chr5-130255540-3	chr5	130255439	130255639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	-9.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	109.83	108.41	94.7	83.26	110.05	163.06	71.42	86.1	164.63	156.66	182.4	77.38
Merged-chr10-128232186-3	chr10	128232099	128232299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008600)	TTS (NM_008600)	136.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	38.36	39.99	38.79	25.34	39.68	37.63	37.87	27.62	27.93	48.7	31.66	41.35
Merged-chr10-36916982-3	chr10	36916868	36917068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57576.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	25.44	15.85	23.96	40.62	43.77	31.67	45.18	52.37	29.31	26.11	60.3	34.46
Merged-chr9-55511813-3	chr9	55511731	55511931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145615, intron 1 of 11)	CpG	412.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	26.25	28.67	19.97	25.34	25.77	36.69	27.24	29.27	28.52	27.62	35.17	28.82
Merged-chr16-92419208-3	chr16	92419098	92419298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-19120.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	32.71	37.98	65.6	24.13	119.87	131.39	83.04	97.74	32.65	29.12	28.64	17.23
Merged-chr6-122921639-3	chr6	122921525	122921725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199311)	promoter-TSS (NM_199311)	-223.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	106.6	100.61	115.23	122.27	91.23	130.45	72.75	112.21	102.87	139.59	116.58	70.48
Merged-chrX-48454289-3	chrX	48454240	48454440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	CpG	8792.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	48.46	41.0	43.93	37.4	43.77	65.85	29.23	60.93	71.2	52.72	81.9	42.92
Merged-chr14-76687210-1	chr14	76687110	76687310	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015485)	TTS (NR_015485)	9642.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.44	2.26	1.71	3.22	2.05	5.96	1.0	7.85	27.73	20.08	43.72	17.23
Merged-chr3-132684034-3	chr3	132683912	132684112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	-132.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	37.15	81.5	41.64	52.29	58.09	63.97	93.01	53.8	69.43	79.83	83.41	45.42
Merged-chr14-14346250-3	chr14	14346152	14346352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-243.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	170.81	185.63	196.24	165.3	136.64	150.2	92.68	97.51	261.79	181.26	205.52	139.4
Merged-chr7-97094439-3	chr7	97094338	97094538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	MLT1G|LTR|ERVL-MaLR	12687.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	14.54	13.58	17.68	27.75	18.0	13.17	19.93	41.38	19.47	6.03	27.64	16.29
Merged-chr6-13691864-3	chr6	13691775	13691975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13909.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	53.7	32.95	40.5	50.68	54.41	59.58	52.48	92.83	62.94	49.21	54.77	32.27
Merged-chr16-10992699-1	chr16	10992599	10992799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	CpG	422.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	81.57	80.74	83.86	62.34	38.46	102.54	53.81	27.9	77.1	79.33	92.46	54.51
Merged-chr7-27536807-3	chr7	27536695	27536895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	13534.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	78.34	69.92	111.24	111.01	84.68	98.15	85.04	107.66	93.23	75.32	137.18	75.81
Merged-chrX-169987029-1	chrX	169986929	169987129	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 8 of 9)	CpG	-8112.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	2.83	1.01	3.42	3.22	0.82	0.94	2.33	0.98	34.81	34.65	44.72	24.12
Merged-chr1-38012309-3	chr1	38012194	38012394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	14284.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	57.34	60.62	45.64	52.29	60.14	65.85	44.18	57.59	95.39	57.74	111.05	51.69
Merged-chr8-40031566-3	chr8	40031476	40031676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	255377.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	28.27	27.92	37.08	45.05	36.41	26.65	31.56	46.37	21.24	23.6	35.17	23.49
Merged-chr3-48101077-3	chr3	48100999	48101199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-74340.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	33.52	30.69	70.17	65.96	52.37	49.54	50.82	76.23	80.84	44.69	88.94	38.85
Merged-chrX-167328742-3	chrX	167328640	167328840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	1831.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	23.82	24.65	22.25	20.91	29.86	41.39	17.94	39.84	45.63	46.19	36.18	22.24
Merged-chr5-63827217-3	chr5	63827138	63827338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	14743.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	78.74	49.8	94.13	116.64	66.27	68.05	85.7	84.56	115.26	103.94	125.62	97.43
Merged-chr17-34587499-3	chr17	34587381	34587581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010929, exon 30 of 30)	exon (NM_010929, exon 30 of 30)	-2325.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	65.82	82.75	46.78	45.05	59.32	100.34	61.12	56.22	71.4	71.3	75.37	64.53
Merged-chr14-40958792-3	chr14	40958695	40958895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	8101.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	34.73	31.44	58.76	44.24	28.23	33.24	34.21	54.84	19.87	17.07	22.11	17.86
Merged-chr14-55660367-3	chr14	55660264	55660464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028316, exon 1 of 5)	non-coding (NR_028316, exon 1 of 5)	144.0	NM_023397	67881.0	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	57.34	41.75	49.06	40.22	63.41	69.3	45.18	42.76	46.62	42.68	45.73	23.18
Merged-chr5-121836436-3	chr5	121836338	121836538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306126)	promoter-TSS (NM_001306126)	-334.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	96.91	66.91	84.43	104.17	70.77	91.88	101.98	98.61	111.33	105.94	164.81	60.15
Merged-chr19-21653084-3	chr19	21652988	21653188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	-221.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	237.43	222.6	229.89	238.1	239.73	285.35	244.15	306.11	303.1	277.16	370.83	162.59
Merged-chr18-36715966-3	chr18	36715861	36716061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10854.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	56.53	39.99	66.74	88.48	93.68	80.27	83.37	90.9	47.4	34.14	63.82	29.45
Merged-chr9-75410138-3	chr9	75410038	75410238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-46.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	234.2	267.63	287.51	259.02	304.37	320.16	279.69	265.85	382.76	372.06	445.2	240.28
Merged-chr17-50510044-1	chr17	50509944	50510144	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	497.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	10.09	9.56	3.42	8.04	10.64	13.17	5.31	8.41	19.08	18.58	17.08	9.4
Merged-chr6-31209601-3	chr6	31209505	31209705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	8869.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	16.56	21.13	23.39	38.61	15.14	28.85	35.54	57.73	28.52	23.1	35.68	27.25
Merged-chr11-50916190-3	chr11	50916096	50916296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178447)	promoter-TSS (NM_178447)	-20.0	NM_001294323	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	33.11	30.43	31.95	39.82	60.96	40.76	25.24	50.41	43.27	32.13	68.34	34.15
Merged-chr5-139252228-3	chr5	139252112	139252312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-112.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	104.99	102.12	111.24	74.0	112.5	143.93	56.8	63.73	160.69	191.8	130.65	68.29
Merged-chr10-67025742-3	chr10	67025651	67025851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110511, intron 2 of 6)	MTD|LTR|ERVL-MaLR	20676.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	85.6	66.15	120.94	75.21	94.09	102.85	75.07	79.07	93.43	105.94	96.98	57.33
Merged-chr8-116634009-3	chr8	116633907	116634107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	MTD|LTR|ERVL-MaLR	98984.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	18.17	31.44	30.23	33.78	38.46	31.98	22.92	32.64	56.25	32.13	77.88	26.31
Merged-chr2-153299150-3	chr2	153299070	153299270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	MIRb|SINE|MIR	7754.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	103.37	86.27	108.39	144.39	78.55	54.88	71.08	84.79	69.04	53.22	82.91	49.81
Merged-chr13-8866881-3	chr13	8866778	8866978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	4166.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	35.13	40.24	40.5	49.07	23.32	34.81	28.23	43.63	49.37	50.71	39.19	34.46
Merged-chr4-40239835-3	chr4	40239735	40239935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-10.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	38.76	26.91	48.49	33.78	48.27	64.91	22.59	30.81	89.3	59.25	47.23	26.0
Merged-chr4-126262214-3	chr4	126262109	126262309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-196.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	151.83	144.13	175.7	135.14	158.73	222.64	117.59	112.94	179.18	235.49	216.07	106.2
Merged-chr12-3235392-3	chr12	3235299	3235499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-392.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	103.78	84.01	92.98	94.52	112.5	133.58	71.42	89.38	134.14	123.52	141.7	67.67
Merged-chr5-149053084-3	chr5	149052968	149053168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010439)	promoter-TSS (NM_010439)	-11.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	100.95	101.11	104.39	100.95	112.5	105.99	90.35	92.92	138.27	152.64	195.47	69.86
Merged-chr8-70653464-3	chr8	70653377	70653577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6261.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	46.03	40.5	25.1	34.99	37.64	51.11	20.93	21.03	44.45	44.69	43.21	24.75
Merged-chr2-144165520-3	chr2	144165451	144165651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23739.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	23.02	29.18	15.4	32.58	21.68	32.61	46.84	30.5	28.91	39.16	35.17	36.34
Merged-chr10-17660946-3	chr10	17660849	17661049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62279.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	20.59	21.13	30.8	27.75	23.73	27.28	26.91	46.85	32.65	19.08	53.77	24.75
Merged-chr10-30842805-3	chr10	30842644	30842844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013904)	promoter-TSS (NM_013904)	39.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	70.26	70.18	61.61	72.8	71.59	80.27	82.05	96.48	94.41	81.84	81.9	61.71
Merged-chr7-28386656-3	chr7	28386556	28386756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6034.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	58.55	43.51	37.65	44.64	59.32	58.64	30.56	30.81	72.58	58.75	101.5	47.3
Merged-chr17-35165465-1	chr17	35165365	35165565	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-588.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	42.8	30.69	26.81	25.34	41.32	51.74	13.29	23.97	71.2	52.72	53.77	31.01
Merged-chr8-109750867-3	chr8	109750774	109750974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13135.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	96.1	91.56	117.51	108.19	123.55	162.43	75.73	111.7	146.93	134.56	126.63	100.56
Merged-chr4-75315619-3	chr4	75315529	75315729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37337.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	28.27	21.13	37.65	47.46	42.96	22.89	61.78	74.33	45.43	26.61	69.85	22.56
Merged-chr9-80067005-3	chr9	80066914	80067114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146003, exon 1 of 23)	5' UTR (NM_146003, exon 1 of 23)	111.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	26.25	17.36	24.53	24.94	29.05	16.93	30.89	20.36	23.21	27.62	35.68	20.68
Merged-chr5-36830664-3	chr5	36830558	36830758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	-9.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	50.88	39.99	45.07	28.15	67.5	49.23	42.52	53.1	63.92	71.3	88.94	45.42
Merged-chr14-105258776-3	chr14	105258669	105258869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190989)	promoter-TSS (NM_001190989)	96.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	73.89	95.58	60.47	98.54	89.18	91.25	77.06	91.18	117.03	70.8	138.69	70.8
Merged-chr3-94933035-3	chr3	94932964	94933164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009150)	promoter-TSS (NM_009150)	-19.0	NM_009150	20341.0	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|MTO|SBP56	selenium binding protein 1	protein-coding	16.56	20.12	27.38	20.51	29.05	30.42	29.23	21.36	15.74	14.56	25.12	17.54
Merged-chr7-19094965-1	chr7	19094865	19095065	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011383, exon 1 of 3)	exon (NM_011383, exon 1 of 3)	421.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	15.75	11.07	10.27	10.46	13.5	11.29	8.97	15.03	13.57	16.57	14.07	17.23
Merged-chr4-149426728-3	chr4	149426622	149426822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022022)	promoter-TSS (NM_022022)	-91.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	40.78	39.74	34.23	28.56	51.96	42.96	35.54	39.45	44.84	56.24	55.27	32.58
Merged-chr14-57887329-3	chr14	57887227	57887427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	3009.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	23.82	18.61	35.94	20.51	17.18	17.87	22.59	22.96	16.72	17.07	29.14	18.8
Merged-chr17-30612697-3	chr17	30612595	30612795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025374)	promoter-TSS (NM_025374)	-36.0	NM_001113560	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	377.55	357.92	419.29	405.82	135.82	154.9	83.37	116.92	111.72	112.97	187.43	87.71
Merged-chr4-32249933-3	chr4	32249846	32250046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167489.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	22.21	26.41	28.52	48.67	30.68	36.37	40.86	50.69	44.06	36.65	67.33	35.09
Merged-chr10-82914328-1	chr10	82914228	82914428	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47702.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.81	2.01	5.7	1.61	4.09	3.14	5.98	7.12	1.97	1.0	0.5	3.76
Merged-chr18-26864262-3	chr18	26864175	26864375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1110118.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	46.84	33.96	34.23	57.11	58.09	50.49	40.86	88.51	75.13	63.77	84.92	69.86
Merged-chr4-155564056-1	chr4	155563956	155564156	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355599, intron 1 of 10)	CpG	241.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	78.74	56.09	64.46	49.07	84.68	82.47	54.81	75.34	94.21	107.45	99.49	78.32
Merged-chr8-45975328-3	chr8	45975237	45975437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138668)	promoter-TSS (NM_138668)	-85.0	NM_001033148	69479.0	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	269.74	265.87	268.69	250.17	283.1	394.79	262.42	319.57	331.42	351.98	413.04	231.5
Merged-chr11-3150166-2	chr11	3150038	3150238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	26117.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	22.61	22.64	25.1	21.32	17.59	15.05	16.61	10.6	1.97	5.02	2.01	4.7
Merged-chr6-137410681-3	chr6	137410584	137410784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-37.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	73.89	67.66	82.72	79.23	78.14	93.13	52.48	80.86	102.08	77.32	131.65	44.17
Merged-chr4-128840571-3	chr4	128840436	128840636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34424.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	31.9	14.34	39.93	31.77	32.73	16.62	35.21	32.52	32.45	18.08	49.75	20.68
Merged-chr14-76010913-3	chr14	76010825	76011025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026816)	promoter-TSS (NM_026816)	-60.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	48.46	41.5	59.33	37.0	54.41	58.64	34.55	52.93	64.51	86.86	61.81	33.52
Merged-chr5-102033481-3	chr5	102033393	102033593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36428.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	44.82	42.01	72.45	60.33	49.91	49.23	54.14	63.36	46.42	47.7	70.35	33.21
Merged-chr13-40968785-3	chr13	40968694	40968894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	LTR41|LTR|ERVL	-32216.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	137.69	119.48	134.63	142.38	150.55	205.08	150.47	164.41	172.1	170.21	165.32	83.96
Merged-chr6-88898755-3	chr6	88898649	88898849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	31.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	77.93	77.97	78.72	71.59	105.14	126.37	53.15	82.4	124.5	107.95	135.17	74.87
Merged-chr13-5803810-3	chr13	5803697	5803897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54295.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	63.4	46.03	54.19	52.29	76.91	71.49	57.8	59.36	76.31	71.8	77.88	51.06
Merged-chr8-110619886-3	chr8	110619797	110619997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151675, intron 1 of 17)	MER3|DNA|hAT-Charlie	1330.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	30.28	30.69	42.78	27.35	23.73	38.57	26.24	50.02	36.19	20.59	44.72	19.74
Merged-chr16-62786791-3	chr16	62786694	62786894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-78.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	181.71	169.03	106.1	155.25	191.87	239.57	102.31	200.38	248.02	212.39	252.75	141.6
Merged-chr13-41433377-1	chr13	41433277	41433477	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53983.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.08	3.52	9.13	2.82	13.09	22.58	13.95	22.35	4.92	4.02	4.52	3.13
Merged-chr16-64873988-3	chr16	64873879	64874079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21978.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	18.57	14.59	37.65	26.14	40.5	28.54	44.84	45.22	55.07	39.16	79.89	33.83
Merged-chr11-26593663-3	chr11	26593593	26593793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001252447, exon 1 of 12)	5' UTR (NM_001252447, exon 1 of 12)	227.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	81.97	80.74	79.86	66.36	42.96	49.23	46.5	59.89	96.18	83.35	118.59	58.58
Merged-chr10-66931730-3	chr10	66931625	66931825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11341.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	55.32	34.71	59.33	72.4	87.14	52.05	74.74	88.54	77.1	57.24	106.53	36.03
Merged-chr6-33824222-3	chr6	33824135	33824335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-205213.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	86.41	59.61	61.61	59.12	65.87	101.6	64.11	103.12	89.89	87.37	89.44	57.95
Merged-chr8-72443825-3	chr8	72443754	72443954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028500)	promoter-TSS (NM_028500)	-26.0	NM_028170	72254.0	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	117.91	118.97	123.22	128.3	137.05	149.89	124.23	132.2	163.64	169.71	180.39	100.25
Merged-chr16-36985828-3	chr16	36985717	36985917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358217, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	4650.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	65.82	114.19	149.46	105.78	103.5	121.67	88.69	89.08	108.97	89.37	98.99	77.38
Merged-chr13-81025496-3	chr13	81025352	81025552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	61378.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	39.98	32.2	59.33	40.62	66.68	50.8	46.5	7.65	37.76	47.2	52.26	25.37
Merged-chr17-78882592-3	chr17	78882487	78882687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011163)	promoter-TSS (NM_011163)	-15.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	14.54	29.68	23.39	33.78	35.18	30.42	21.92	42.9	49.76	31.13	61.81	21.93
Merged-chr7-126746952-3	chr7	126746864	126747064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12662.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	73.49	48.29	65.6	39.01	78.14	131.39	51.15	58.37	119.0	113.98	141.7	54.2
Merged-chr4-137862208-3	chr4	137862107	137862307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-30.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	77.12	41.25	73.59	61.94	70.37	74.0	71.08	61.85	76.12	68.29	92.96	52.32
Merged-chr9-57646827-3	chr9	57646733	57646933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	MIR|SINE|MIR	-1180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	38.36	26.41	47.92	45.85	49.09	52.99	39.53	68.02	39.14	34.65	58.79	50.75
Merged-chr5-59996844-3	chr5	59996731	59996931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10829.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	14.13	11.82	7.42	22.52	33.55	38.26	45.51	52.93	53.7	63.27	65.32	29.13
Merged-chr4-155223257-3	chr4	155223151	155223351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-716.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	233.8	212.79	200.8	158.87	211.92	241.14	154.79	130.85	238.39	258.58	246.22	135.96
Merged-chr5-123079876-3	chr5	123079781	123079981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	3606.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	19.38	35.21	26.24	29.36	35.18	54.88	35.21	35.58	40.32	30.13	19.09	23.49
Merged-chr4-123917370-3	chr4	123917279	123917479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017475)	promoter-TSS (NM_017475)	-54.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	155.06	152.43	155.16	157.26	177.96	164.31	105.3	157.71	197.87	174.23	227.12	113.09
Merged-chr8-71922802-3	chr8	71922716	71922916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	-9.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	111.85	147.9	154.02	165.71	117.0	174.35	117.26	93.48	164.43	163.69	158.28	107.76
Merged-chr16-76355452-3	chr16	76355341	76355541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	ID4_|SINE|ID	17608.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	19.79	25.66	34.23	44.24	18.0	17.25	21.26	29.33	30.49	29.12	29.65	23.18
Merged-chr2-128747689-3	chr2	128747607	128747807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	48792.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	88.03	68.67	74.16	98.54	81.41	116.65	119.91	86.92	75.13	92.89	82.91	61.4
Merged-chr12-16589780-3	chr12	16589693	16589893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172950)	promoter-TSS (NM_172950)	-23.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	35.94	39.99	31.38	40.22	53.59	41.71	27.24	35.75	37.76	36.15	45.22	19.74
Merged-chr9-120571068-3	chr9	120570986	120571186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-431.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	36.34	30.94	41.07	29.76	45.82	42.96	41.52	45.36	62.35	52.72	84.42	34.15
Merged-chrX-73459106-3	chrX	73459011	73459211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207104)	promoter-TSS (NM_207104)	-82.0	NM_207104	73738.0	Mm.264899	NM_028633	ENSMUSG00000031371	Haus7	1110020L19Rik|Uchl5ip|Uip1	HAUS augmin-like complex, subunit 7	protein-coding	132.44	135.83	155.16	155.25	180.82	186.58	172.4	208.09	175.05	175.74	268.83	108.7
Merged-chr1-59119901-3	chr1	59119744	59119944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037812)	promoter-TSS (NM_001037812)	-38.0	NM_001037812	381259.0	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	30.28	23.14	40.5	22.52	47.46	48.29	19.27	28.18	79.46	64.27	102.0	52.94
Merged-chr16-55698736-3	chr16	55698607	55698807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123431.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	171.61	205.25	129.49	204.32	194.73	220.76	177.05	174.11	218.13	233.48	251.74	131.89
Merged-chr19-5118364-3	chr19	5118240	5118440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008451)	promoter-TSS (NM_008451)	68.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	55.32	53.58	50.77	44.24	67.91	89.37	49.83	54.31	52.71	54.23	58.29	27.88
Merged-chr9-50591030-3	chr9	50590930	50591130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12819.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	87.62	77.47	104.39	115.03	126.0	116.96	82.71	123.11	111.72	110.46	107.53	68.61
Merged-chr18-88971718-3	chr18	88971605	88971805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175542)	promoter-TSS (NM_175542)	-85.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	45.23	30.43	35.94	33.78	62.59	57.07	36.87	72.25	82.41	81.34	141.2	47.93
Merged-chrX-166170351-3	chrX	166170260	166170460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146238)	promoter-TSS (NM_146238)	-94.0	NM_146238	237221.0	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem nuclear organelle associated protein 8	protein-coding	90.85	88.29	102.11	117.44	120.28	121.04	94.67	134.38	148.7	172.72	217.57	95.86
Merged-chr19-6268975-3	chr19	6268875	6269075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	4131.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	36.34	20.63	46.21	25.34	68.32	63.97	58.79	55.35	73.17	55.23	48.74	27.57
Merged-chr19-28990390-3	chr19	28990293	28990493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302443)	promoter-TSS (NM_001302443)	41.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	106.6	107.15	103.82	97.73	126.41	139.85	84.7	130.79	151.84	129.04	176.37	79.26
Merged-chr6-122308763-3	chr6	122308647	122308847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	27.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	250.35	272.4	252.71	283.15	312.56	353.4	263.08	289.07	342.24	358.5	455.25	242.78
Merged-chr13-74563992-3	chr13	74563876	74564076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70026.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	13.73	17.61	31.38	34.19	40.09	24.46	43.51	47.72	38.94	28.12	62.81	26.63
Merged-chr3-37419742-3	chr3	37419640	37419840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-144.0	NM_153561	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	243.08	272.91	238.45	260.22	253.24	358.41	300.28	277.32	374.1	464.95	507.51	221.79
Merged-chr4-9630700-3	chr4	9630590	9630790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	13027.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	77.53	95.58	128.92	107.39	117.82	124.8	90.35	137.89	148.5	103.94	183.91	87.71
Merged-chr15-95802951-2	chr15	95802840	95803040	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	12097.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.48	14.34	11.41	10.46	25.36	44.84	20.93	30.56	37.76	37.16	28.64	19.74
Merged-chr11-119863612-3	chr11	119863502	119863702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-18687.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	46.84	41.5	45.64	38.21	44.18	51.74	41.85	56.94	59.6	66.28	52.76	35.09
Merged-chr16-75877382-3	chr16	75877274	75877474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 4 of 7)	intron (NM_023380, intron 4 of 7)	31892.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	75.11	66.15	114.09	95.32	127.23	141.42	102.31	138.59	124.31	103.94	140.7	68.29
Merged-chr13-21811781-1	chr13	21811681	21811881	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175657)	promoter-TSS (NM_175657)	-3.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	35.8	22.59	53.77	17.23
Merged-chr1-138261715-3	chr1	138261596	138261796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12042.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	87.22	83.26	71.31	96.53	73.23	89.05	70.75	92.94	61.76	58.24	66.33	40.72
Merged-chr14-103099054-4	chr14	103098988	103099188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-84.0	NM_001347601	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	47.65	34.21	27.95	28.15	47.87	61.15	23.25	43.04	73.76	63.27	79.89	29.13
Merged-chr16-92826117-3	chr16	92826042	92826242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-68.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	66.63	46.28	55.9	46.25	82.64	93.44	59.46	88.99	86.15	89.88	77.38	57.95
Merged-chr15-53139476-2	chr15	53139381	53139581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	206702.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	16.56	20.12	18.25	18.1	17.59	23.83	17.61	19.09	35.8	19.08	34.67	11.59
Merged-chr8-111522202-3	chr8	111522091	111522291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176923)	promoter-TSS (NM_176923)	-84.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	147.39	122.49	143.76	139.16	130.91	165.57	129.88	136.07	173.68	173.23	215.06	107.45
Merged-chr2-166713031-3	chr2	166712929	166713129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	803.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	37.96	24.15	60.47	28.15	44.18	47.98	41.19	40.57	52.12	31.63	63.82	49.5
Merged-chr16-62854320-3	chr16	62854216	62854416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011173)	promoter-TSS (NM_011173)	9.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	25.84	27.17	23.96	41.43	49.91	37.0	36.21	48.34	50.16	58.75	70.85	33.83
Merged-chr13-89889220-3	chr13	89889097	89889297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-146685.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	131.64	129.54	162.01	193.46	191.46	197.55	206.61	259.26	211.44	186.78	239.18	112.46
Merged-chr9-57131248-3	chr9	57131151	57131351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102289)	promoter-TSS (NR_102289)	39.0	NR_102289	76794.0	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	57.74	47.54	51.34	41.83	42.55	51.43	31.22	43.04	71.2	51.21	64.82	25.37
Merged-chr7-128381184-3	chr7	128381073	128381273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36999.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	26.25	13.58	25.67	31.77	41.73	35.43	21.92	43.09	24.0	38.66	38.19	24.12
Merged-chr1-64600832-3	chr1	64600749	64600949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	16319.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	18.17	23.14	34.23	33.78	25.77	19.13	10.63	28.51	22.03	23.6	36.68	16.6
Merged-chr15-96642968-4	chr15	96642830	96643030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	-17.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	25.44	23.9	21.68	23.73	24.96	40.45	41.52	23.55	41.7	43.18	52.26	29.45
Merged-chr19-44069411-3	chr19	44069299	44069499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145502, exon 1 of 11)	5' UTR (NM_145502, exon 1 of 11)	287.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	40.38	38.23	29.66	35.8	43.77	54.88	28.23	29.5	55.27	45.19	78.39	29.13
Merged-chr1-53313655-3	chr1	53313554	53313754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104361)	promoter-TSS (NR_104361)	30.0	NR_104360	72085.0	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	22.21	21.38	31.38	30.57	41.32	34.49	33.22	41.64	53.89	46.19	74.37	31.01
Merged-chr2-181541991-3	chr2	181541898	181542098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271585, intron 2 of 5)	intron (NM_001271585, intron 2 of 5)	21513.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	16.96	16.6	8.56	10.86	28.23	18.81	16.94	21.36	19.08	18.58	20.6	17.23
Merged-chr17-25273506-3	chr17	25273405	25273605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-74.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	60.97	78.73	42.78	65.56	58.5	84.04	53.81	52.65	63.14	75.82	48.74	52.94
Merged-chr1-182380843-3	chr1	182380731	182380931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28336.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	48.05	36.97	81.0	72.4	55.23	73.69	71.42	84.9	80.84	67.78	86.43	55.13
Merged-chr8-46893132-3	chr8	46893059	46893259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-93728.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	85.6	88.29	90.7	101.35	85.09	117.9	98.32	87.14	112.7	110.97	152.75	64.22
Merged-chr9-53248203-3	chr9	53248109	53248309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029936)	promoter-TSS (NM_029936)	-97.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	189.38	189.4	200.8	191.04	165.69	214.8	151.8	170.94	244.48	212.39	207.02	141.28
Merged-chr11-69134458-3	chr11	69134366	69134566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011786, exon 10 of 15)	exon (NM_011786, exon 10 of 15)	8089.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	54.51	54.58	59.33	43.04	70.77	77.77	54.81	67.49	90.67	69.29	77.88	64.85
Merged-chr14-17659154-3	chr14	17659059	17659259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1801.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	37.15	22.13	33.66	16.89	31.91	26.65	21.92	26.83	27.93	22.09	38.69	19.11
Merged-chr4-125123001-3	chr4	125122899	125123099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4882.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	24.63	19.87	37.08	17.29	23.73	33.87	22.26	24.73	23.21	14.06	24.62	10.96
Merged-chr12-80132185-1	chr12	80132085	80132285	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033514, intron 1 of 2)	intron (NR_033514, intron 1 of 2)	659.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	9.29	10.56	6.85	12.47	8.59	13.48	16.61	10.68	15.93	17.07	27.64	17.23
Merged-chr2-3355957-3	chr2	3355790	3355990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	10679.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	40.38	28.42	49.06	18.5	33.14	61.77	37.54	33.31	35.6	36.15	39.19	21.93
Merged-chr17-17394183-1	chr17	17394083	17394283	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8503.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	30.28	19.87	22.25	23.33	22.91	31.36	21.59	34.01	27.93	25.11	37.18	11.59
Merged-chr17-69382828-3	chr17	69382728	69382928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356283)	promoter-TSS (NM_001356283)	-347.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	117.91	141.11	113.52	99.34	143.19	173.09	147.48	141.51	196.88	188.29	255.26	103.38
Merged-chr2-154408052-3	chr2	154407966	154408166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009228)	promoter-TSS (NM_009228)	18.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	51.28	37.73	47.35	37.81	41.73	42.02	39.2	48.06	48.19	34.14	71.35	26.94
Merged-chr7-24884510-3	chr7	24884398	24884598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-94.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	177.67	165.76	128.92	130.71	183.28	228.28	130.88	114.62	211.83	231.97	147.23	94.29
Merged-chr3-52105091-3	chr3	52105023	52105223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004176)	promoter-TSS (NM_001004176)	-117.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	29.07	27.17	18.83	28.96	31.09	33.24	30.23	28.54	53.5	44.69	51.25	25.37
Merged-chr13-63702038-2	chr13	63701946	63702146	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	32252.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	1.21	0.5	1.14	0.0	45.82	88.43	43.18	54.5	127.45	86.86	112.05	62.34
Merged-chr4-126131933-3	chr4	126131887	126132087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16016.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	77.12	72.94	87.28	75.21	96.14	107.24	56.47	102.7	88.71	99.42	158.28	67.67
Merged-chr2-80524453-3	chr2	80524339	80524539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355411, intron 19 of 30)	intron (NM_001355411, intron 19 of 30)	56743.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	41.59	38.99	40.5	41.83	39.68	67.42	47.83	59.44	44.65	38.16	56.78	28.51
Merged-chr2-174415786-3	chr2	174415683	174415883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020580)	promoter-TSS (NM_020580)	-21.0	NM_020580	57314.0	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	75.91	63.89	70.74	46.25	96.14	142.99	39.53	64.12	139.45	125.53	120.6	74.24
Merged-chr17-56256669-3	chr17	56256555	56256755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-138.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	179.29	159.72	162.58	161.68	214.37	247.1	111.61	191.5	204.56	192.31	238.18	132.2
Merged-chr13-43561230-3	chr13	43561153	43561353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-1062.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	43.21	39.74	27.38	18.1	44.18	85.29	22.59	11.1	55.07	53.22	41.71	16.92
Merged-chr2-109918267-1	chr2	109918167	109918367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_172671, exon 1 of 18)	exon (NM_172671, exon 1 of 18)	620.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	13.33	6.04	17.11	15.28	11.45	10.35	8.64	19.88	11.8	9.54	11.56	9.08
Merged-chr10-69309276-3	chr10	69309161	69309361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43651.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	18.17	18.11	22.82	39.01	27.0	17.25	28.57	43.54	31.47	24.1	47.74	34.46
Merged-chr3-96197606-3	chr3	96197518	96197718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-32.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	34.73	18.61	33.66	34.59	36.0	28.54	17.61	24.67	32.26	51.21	44.22	28.19
Merged-chr6-117907717-3	chr6	117907620	117907820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166428)	intron (NM_133834, intron 1 of 3)	-84.0	NM_001166428	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	92.87	112.43	97.55	104.97	112.09	170.58	96.66	117.62	134.34	131.55	146.72	98.99
Merged-chr7-92885624-3	chr7	92885529	92885729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	LTR48B|LTR|ERV1	10376.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	57.34	60.12	61.04	39.82	47.05	44.53	44.51	55.49	69.04	49.21	42.71	35.71
Merged-chr3-40500601-3	chr3	40500490	40500690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	22322.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	25.44	24.65	37.08	38.21	27.82	48.92	44.84	28.6	120.18	94.4	133.66	79.26
Merged-chr4-136142867-2	chr4	136142766	136142966	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-956.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	14.94	9.06	10.27	4.42	14.73	14.74	10.96	16.88	17.51	11.55	15.07	13.16
Merged-chr5-105599019-3	chr5	105598914	105599114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	79543.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	87.62	74.2	81.58	111.81	126.0	145.81	116.92	110.58	125.88	111.47	166.82	58.58
Merged-chr11-70655078-3	chr11	70654961	70655161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-411.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	40.38	40.24	34.23	43.44	59.73	40.45	21.59	29.47	81.23	60.25	65.32	33.21
Merged-chr1-74237086-3	chr1	74236982	74237182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	CpG	565.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	27.05	23.9	30.8	24.94	28.64	37.32	30.23	38.72	52.71	45.69	66.33	31.64
Merged-chr11-20632479-3	chr11	20632368	20632568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038625, intron 1 of 1)	CpG	491.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	64.61	67.91	41.07	71.19	39.68	64.6	65.77	47.13	89.49	99.92	55.27	63.91
Merged-chr5-122850049-3	chr5	122849954	122850154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030564)	promoter-TSS (NM_030564)	-134.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	166.77	118.72	139.19	95.72	144.41	165.57	117.26	124.79	177.02	181.26	191.95	91.16
Merged-chr11-114675463-3	chr11	114675395	114675595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053273)	promoter-TSS (NM_053273)	27.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	43.61	50.81	55.9	39.01	53.59	59.58	40.86	44.07	71.99	48.2	74.37	45.11
Merged-chr1-77832375-3	chr1	77832272	77832472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-317284.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	104.99	78.73	136.91	137.15	136.23	107.56	117.26	161.75	149.68	115.48	198.98	92.41
Merged-chr11-120713805-3	chr11	120713699	120713899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	9.0	NM_001347611	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	130.83	140.86	127.78	134.33	158.32	179.05	120.91	133.32	151.06	147.62	224.61	98.05
Merged-chr2-158156656-3	chr2	158156564	158156764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10272.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.86	26.41	32.52	9.65	20.86	29.48	29.23	21.25	31.86	27.62	45.73	25.37
Merged-chr5-122653477-2	chr5	122653372	122653572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038845, intron 2 of 12)	intron (NM_001038845, intron 2 of 12)	3048.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	18.98	16.85	30.23	32.18	36.41	27.91	33.55	32.52	2.95	1.51	9.04	11.59
Merged-chr2-121955960-3	chr2	121955859	121956059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-42.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	107.81	95.83	109.53	94.92	114.14	111.95	76.07	118.12	145.94	123.02	209.54	74.24
Merged-chr18-54847117-3	chr18	54847028	54847228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143052.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	44.42	38.99	42.78	57.51	63.0	57.38	29.9	62.55	50.16	51.21	84.42	53.26
Merged-chr17-35242804-3	chr17	35242758	35242958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	41.0	NM_001252457	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	64.2	45.02	57.62	44.64	61.37	66.79	58.79	70.04	77.1	48.2	62.31	49.18
Merged-chr16-35938927-3	chr16	35938797	35938997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030253, exon 1 of 11)	5' UTR (NM_030253, exon 1 of 11)	130.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	23.02	38.48	43.93	21.72	28.23	28.54	18.6	25.35	23.01	11.05	32.16	14.41
Merged-chr1-176824066-3	chr1	176823959	176824159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9399.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	107.41	84.76	160.3	116.24	84.68	113.2	65.77	106.01	141.22	154.15	214.06	80.82
Merged-chr3-9713671-3	chr3	9713561	9713761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-103576.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	22.61	7.29	40.5	34.19	29.86	27.59	39.53	63.0	33.83	19.58	56.78	20.05
Merged-chr3-55652528-3	chr3	55652442	55652642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-129968.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	50.88	37.73	79.86	83.66	59.73	57.07	97.99	138.22	51.53	37.66	102.51	52.0
Merged-chr5-21187000-3	chr5	21186896	21187096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	729.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	23.82	15.59	18.25	6.84	25.36	32.61	26.57	16.35	31.86	28.12	25.63	6.89
Merged-chr4-124772345-2	chr4	124772239	124772439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008385, intron 7 of 23)	L2a|LINE|L2	-20985.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	21.8	15.09	23.96	30.57	26.18	10.35	26.57	28.65	7.87	12.05	8.54	18.48
Merged-chr2-52943872-3	chr2	52943776	52943976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	86008.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	58.15	48.29	49.63	26.55	46.64	84.98	43.18	43.79	67.07	59.25	57.79	21.93
Merged-chr3-95625337-3	chr3	95625285	95625485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	405.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	140.12	123.25	165.43	170.53	160.78	169.02	107.96	166.12	147.12	141.59	174.36	93.04
Merged-chr16-10838668-3	chr16	10838574	10838774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3615.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	58.55	90.05	115.23	99.75	86.32	96.27	83.37	85.26	86.54	99.42	118.59	50.75
Merged-chr14-54754759-3	chr14	54754652	54754852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27134.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	59.36	47.54	50.2	45.45	54.82	72.12	53.15	54.31	76.12	62.26	93.46	59.52
Merged-chr8-119862202-3	chr8	119862127	119862327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146219)	promoter-TSS (NM_146219)	-78.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	155.87	132.56	148.89	133.53	193.92	198.81	121.91	169.71	178.2	182.26	250.74	118.41
Merged-chr5-103425155-3	chr5	103425024	103425224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011204)	promoter-TSS (NM_011204)	-68.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	19.38	17.61	11.41	17.7	29.05	18.5	12.95	24.76	18.1	26.11	34.17	16.6
Merged-chr7-25237918-3	chr7	25237861	25238061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-110.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	67.43	71.43	79.29	63.95	72.82	94.07	65.44	60.7	81.63	94.9	98.49	64.53
Merged-chr11-78301528-3	chr11	78301439	78301639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017407)	promoter-TSS (NM_017407)	-52.0	NM_017407	54141.0	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	30.28	34.96	19.97	24.94	38.05	44.53	13.62	28.21	54.88	33.14	51.76	21.3
Merged-chr4-53412168-3	chr4	53412054	53412254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28259.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	71.88	65.4	76.44	92.1	61.77	122.29	58.13	67.4	81.43	80.34	86.93	64.53
Merged-chr17-85090603-3	chr17	85090495	85090695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	-105.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	92.07	96.84	114.66	88.48	118.64	136.09	77.73	118.65	181.35	176.24	213.56	98.05
Merged-chr10-88146956-3	chr10	88146862	88147062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-21.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	25.44	17.61	27.95	22.52	29.86	22.58	14.28	27.67	31.27	21.59	38.19	21.93
Merged-chr9-56041885-3	chr9	56041792	56041992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011992)	promoter-TSS (NM_011992)	47.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	83.18	85.02	87.85	99.75	95.73	133.58	88.36	93.28	77.69	97.91	139.69	49.81
Merged-chr11-95666880-3	chr11	95666786	95666986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-71.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	87.62	81.24	73.02	88.89	103.09	116.02	43.85	65.08	132.17	125.02	100.5	81.14
Merged-chr17-35165002-3	chr17	35164902	35165102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-125.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	214.82	206.5	188.25	151.23	213.55	265.28	137.19	149.02	214.78	247.54	173.36	124.68
Merged-chr3-30968989-2	chr3	30968885	30969085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165954, intron 1 of 14)	CpG	430.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	12.52	13.83	17.68	13.67	13.91	12.23	23.25	14.47	23.41	15.06	26.13	15.04
Merged-chr1-180771940-3	chr1	180771852	180772052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41653.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	23.42	32.7	17.68	17.29	37.64	45.15	15.61	19.51	37.17	29.12	34.17	13.47
Merged-chr5-9087085-3	chr5	9086988	9087188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13649.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	37.15	19.37	47.35	48.26	65.05	45.78	41.85	60.48	47.4	58.75	52.76	28.82
Merged-chr8-79143949-3	chr8	79143836	79144036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	104647.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	50.88	43.26	51.34	81.65	24.96	36.37	66.43	84.84	40.71	26.61	46.23	35.4
Merged-chr16-76202104-3	chr16	76202024	76202224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79511.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	25.44	25.91	25.67	22.93	28.64	55.82	31.89	39.45	46.62	36.65	53.77	18.17
Merged-chr8-36238253-3	chr8	36238148	36238348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	11268.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	32.3	25.4	47.35	26.95	44.18	40.14	40.19	47.89	36.19	26.11	58.79	20.05
Merged-chr11-89024435-3	chr11	89024269	89024469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24966.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	218.45	204.74	217.91	224.83	242.19	287.86	198.97	234.7	249.6	280.17	338.17	158.2
Merged-chr2-167690717-3	chr2	167690688	167690888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	29.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	11.31	10.06	27.38	17.7	23.73	31.04	19.6	28.37	26.75	29.12	46.73	28.82
Merged-chr17-50674729-3	chr17	50674622	50674822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 5 of 5)	LTR48B|LTR|ERV1	-23959.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	17.77	16.6	25.1	28.96	27.41	35.12	16.94	35.78	25.96	24.1	32.66	12.22
Merged-chr13-85223364-2	chr13	85223268	85223468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 20 of 24)	intron (NM_145452, intron 20 of 24)	33983.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	27.46	29.43	29.66	19.71	36.82	49.86	35.87	24.34	0.0	1.0	2.51	0.31
Merged-chr2-148393337-3	chr2	148393246	148393446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2031.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	31.09	15.59	33.66	36.6	34.36	35.12	31.22	62.64	37.17	41.17	51.25	36.65
Merged-chr2-30066343-3	chr2	30066273	30066473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204875)	promoter-TSS (NM_001204875)	-101.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	95.3	89.8	116.37	62.74	121.91	132.64	72.41	109.07	140.24	152.14	180.39	57.95
Merged-chr1-86399529-3	chr1	86399427	86399627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10166.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	24.23	17.61	51.34	41.43	49.09	20.38	29.9	35.38	53.7	44.69	59.29	37.91
Merged-chr7-19004133-3	chr7	19004069	19004269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178757, exon 1 of 1)	5' UTR (NM_178757, exon 1 of 1)	104.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	26.25	28.17	23.39	34.59	27.0	39.2	43.85	27.0	29.11	31.13	25.12	20.36
Merged-chr9-53667505-3	chr9	53667405	53667605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027807)	promoter-TSS (NM_027807)	2.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	43.61	48.29	57.05	48.67	47.05	76.2	49.49	63.73	70.22	57.24	69.85	47.62
Merged-chr11-100545619-3	chr11	100545492	100545692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-40.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	53.3	45.28	48.49	44.24	61.77	46.41	26.91	45.7	50.16	54.23	85.42	37.28
Merged-chrX-37110401-3	chrX	37110289	37110489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026573)	promoter-TSS (NM_026573)	-67.0	NM_026573	68134.0	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	127.2	117.97	123.22	100.15	151.78	138.6	116.92	164.1	166.79	117.49	190.94	109.96
Merged-chr6-54595181-3	chr6	54595067	54595267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164361)	promoter-TSS (NM_001164361)	56.0	NM_001164361	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	87.62	101.62	95.84	92.1	94.5	103.17	72.75	115.57	83.59	83.35	106.53	68.29
Merged-chr1-127786054-3	chr1	127785953	127786153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	11889.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	29.48	26.16	35.37	43.84	21.27	34.18	18.93	37.46	35.4	41.17	61.81	28.19
Merged-chr6-136690247-3	chr6	136690179	136690379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28386.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	121.14	118.97	158.02	133.53	117.82	115.39	96.99	109.49	135.12	135.07	165.82	87.71
Merged-chr9-70656244-3	chr9	70656166	70656366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	908.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	33.52	21.38	22.82	22.93	33.55	27.91	19.93	23.69	39.93	29.12	23.62	22.56
Merged-chr13-23562476-3	chr13	23562407	23562607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-142.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	140.12	127.27	96.41	123.48	130.91	165.57	113.93	123.42	166.4	172.72	154.76	94.92
Merged-chr11-78345977-3	chr11	78345875	78346075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	391.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	31.5	38.99	28.52	23.33	51.14	54.25	31.56	37.35	47.8	59.75	57.79	32.89
Merged-chr13-17804651-1	chr13	17804551	17804751	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	446.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	14.13	14.59	6.85	14.48	15.14	13.8	21.92	20.94	24.0	21.59	29.14	27.57
Merged-chr4-126438514-3	chr4	126438398	126438598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8956.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	35.94	43.26	42.21	49.47	38.86	47.98	47.5	45.53	54.09	79.33	60.8	31.64
Merged-chr7-30321710-3	chr7	30321589	30321789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033140, exon 1 of 1)	3' UTR (NM_001033140, exon 1 of 1)	686.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	26.65	13.58	14.83	19.31	32.32	31.04	28.9	23.16	20.06	16.07	19.6	13.47
Merged-chr19-29812971-3	chr19	29812852	29813052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177721)	promoter-TSS (NM_177721)	22.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	25.84	27.92	26.24	26.14	25.36	34.81	33.55	26.24	32.45	29.62	40.2	15.98
Merged-chr3-22077453-3	chr3	22077353	22077553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	801.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	50.88	40.5	37.08	37.81	59.32	52.05	42.52	48.56	50.75	61.26	36.18	46.99
Merged-chr10-99107114-3	chr10	99107043	99107243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	61.0	NR_153333	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	22.61	35.47	19.4	36.2	44.18	28.85	35.54	30.03	37.37	36.15	44.72	25.69
Merged-chr15-96709237-2	chr15	96709128	96709328	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9500.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	16.15	11.32	5.7	5.23	16.36	24.46	12.95	11.61	22.42	15.57	21.1	15.98
Merged-chr10-81298877-3	chr10	81298792	81298992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	L1MB7|LINE|L1	5929.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	128.0	88.79	117.51	79.23	135.0	158.98	82.38	117.11	117.82	125.53	135.17	83.02
Merged-chr11-106741478-3	chr11	106741369	106741569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-9757.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	82.78	44.27	96.98	49.07	111.69	72.44	32.55	80.5	101.1	77.32	88.94	57.64
Merged-chr7-96302881-2	chr7	96302773	96302973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	-2794.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	18.57	14.84	15.97	25.74	29.46	10.66	28.9	42.93	3.74	2.01	0.0	2.82
Merged-chrX-96095993-3	chrX	96095886	96096086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010833)	promoter-TSS (NM_010833)	-59.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	27.05	26.66	26.24	30.16	31.91	34.81	13.95	26.22	35.99	39.16	32.66	15.98
Merged-chr5-113854770-1	chr5	113854670	113854870	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011779, intron 3 of 10)	intron (NM_011779, intron 3 of 10)	-24269.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	5.65	2.01	2.28	0.8	14.73	10.98	3.32	16.85	6.69	4.52	13.57	6.58
Merged-chr11-85353077-3	chr11	85352953	85353153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-111.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	118.31	124.76	124.36	150.02	146.46	172.78	75.73	124.51	165.22	141.09	151.25	79.57
Merged-chr7-135537792-3	chr7	135537743	135537943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316678)	promoter-TSS (NM_001316678)	19.0	NM_001316678	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	29.07	24.9	23.39	42.23	29.86	38.88	30.56	35.89	21.44	26.11	44.22	14.1
Merged-chr11-78550866-3	chr11	78550816	78551016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-181.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	98.53	101.11	79.29	97.33	114.96	127.62	80.72	75.36	133.94	146.11	133.16	70.8
Merged-chr18-54901074-3	chr18	54900978	54901178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89102.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	25.44	14.09	25.67	40.22	29.05	15.37	25.91	51.81	38.55	28.12	53.26	22.24
Merged-chr4-154142374-3	chr4	154142257	154142457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021499)	promoter-TSS (NM_021499)	-15.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	50.47	42.26	62.18	56.71	88.78	65.54	43.51	73.23	96.97	102.43	111.05	53.57
Merged-chr1-194677981-1	chr1	194677881	194678081	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58152.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	4.44	2.01	1.71	0.8	4.5	4.39	8.3	10.68	1.38	0.0	1.51	0.94
Merged-chr9-107338409-3	chr9	107338315	107338515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133984)	promoter-TSS (NM_133984)	-65.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	21.0	17.36	23.39	22.93	37.64	34.18	16.28	17.38	44.65	34.14	61.81	27.25
Merged-chr16-76527529-5	chr16	76527409	76527609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21286.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	10.9	6.04	11.98	2.82	10.64	16.31	14.95	7.23	30.68	13.05	20.1	11.59
Merged-chr9-64022092-3	chr9	64021989	64022189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-30.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	88.84	89.29	94.7	105.38	101.46	127.62	73.41	120.0	160.5	157.16	149.74	103.69
Merged-chr3-116184584-3	chr3	116184504	116184704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54916.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	42.4	32.45	23.96	20.51	24.55	36.37	28.9	29.47	40.91	38.16	31.15	27.25
Merged-chr2-30364143-3	chr2	30364043	30364243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175392)	promoter-TSS (NM_175392)	-90.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	174.44	160.73	207.65	219.6	201.28	205.7	130.88	187.82	232.68	197.33	258.78	137.21
Merged-chr4-155491282-3	chr4	155491198	155491398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-63.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	48.46	50.31	51.34	31.77	56.46	51.74	28.23	28.57	65.5	78.33	52.26	40.72
Merged-chr6-148896270-3	chr6	148896217	148896417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-80.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	96.1	79.99	74.73	108.19	103.5	80.27	104.97	107.47	85.76	96.91	78.39	54.2
Merged-chr14-72604310-3	chr14	72604210	72604410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	105693.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	64.2	65.9	57.62	86.07	82.23	80.59	65.44	107.8	82.61	83.85	97.48	56.39
Merged-chr1-136008093-3	chr1	136008000	136008200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160145)	promoter-TSS (NM_001160145)	-119.0	NM_001160145	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	21.8	15.59	27.38	25.34	30.68	46.41	19.93	40.91	35.99	32.13	43.72	25.06
Merged-chr4-44234087-3	chr4	44233988	44234188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12821.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	83.18	116.21	90.13	80.84	113.32	119.47	69.76	91.4	129.03	125.02	183.91	69.55
Merged-chr18-76242210-3	chr18	76242112	76242312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010754, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	511.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	29.88	25.15	17.68	20.51	36.82	32.61	33.88	32.36	33.44	26.11	32.16	21.3
Merged-chr9-111562760-3	chr9	111562653	111562853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	123672.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	12.92	21.13	22.25	38.61	17.59	23.83	20.93	21.98	37.76	36.15	39.19	22.24
Merged-chr17-35980310-2	chr17	35980211	35980411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	356.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	24.63	25.66	19.97	16.89	41.73	29.16	27.57	24.7	50.16	45.19	30.65	18.17
Merged-chr1-172522699-3	chr1	172522587	172522787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	1557.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	59.76	34.96	40.5	20.91	22.09	29.48	12.62	27.56	47.01	50.71	52.26	20.68
Merged-chr1-105801401-3	chr1	105801287	105801487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	20664.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	23.82	17.1	18.25	30.16	27.0	26.34	21.92	41.94	27.14	35.15	25.12	26.0
Merged-chr16-25024786-3	chr16	25024666	25024866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34873.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	32.71	37.23	30.23	20.91	32.32	26.65	15.28	23.24	35.01	30.63	39.7	13.16
Merged-chr2-145825417-3	chr2	145825308	145825508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	39292.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	44.82	16.6	46.21	59.53	50.32	36.37	66.43	108.36	45.63	44.69	104.01	45.42
Merged-chr10-82858659-3	chr10	82858568	82858768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-538.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	48.46	39.24	55.33	32.98	59.32	81.22	59.79	40.18	88.71	97.41	90.45	42.6
Merged-chr11-5099320-3	chr11	5099218	5099418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	45.0	NM_177370	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	74.7	133.31	59.33	63.55	53.18	88.74	67.43	57.0	83.4	119.5	96.98	61.71
Merged-chr11-75532059-3	chr11	75531953	75532153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199283)	promoter-TSS (NM_001199283)	-59.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	31.09	35.47	26.24	22.93	56.87	38.57	23.58	35.19	38.75	46.19	39.7	29.13
Merged-chr17-12758171-3	chr17	12758079	12758279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	11527.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	81.16	96.84	109.53	67.97	100.64	113.51	82.38	92.36	123.52	121.51	130.14	78.0
Merged-chr5-136908614-3	chr5	136908510	136908710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026073, intron 1 of 4)	intron (NM_026073, intron 1 of 4)	460.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	27.86	29.68	27.38	22.52	48.27	46.72	19.27	18.95	37.17	45.69	33.16	24.43
Merged-chr4-149166707-3	chr4	149166614	149166814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356332)	promoter-TSS (NM_001356332)	-9.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	114.68	87.53	75.3	110.6	125.59	156.16	93.67	103.23	158.33	137.58	192.95	84.27
Merged-chr4-148160617-1	chr4	148160517	148160717	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-51.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	10.9	5.79	10.27	2.41	10.23	6.59	7.31	7.21	13.77	12.55	27.13	14.72
Merged-chr17-80483070-3	chr17	80482970	80483170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2617.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	115.49	98.6	134.63	123.88	119.87	107.87	95.0	141.34	138.67	126.03	215.57	78.63
Merged-chr6-137694541-3	chr6	137694420	137694620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-40562.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	41.59	25.66	52.48	36.6	25.36	12.86	15.28	28.71	21.64	7.03	28.14	17.86
Merged-chr2-65407315-3	chr2	65407210	65407410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42910.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	18.98	12.83	19.97	25.34	20.05	16.62	37.87	30.95	24.59	20.59	35.17	10.65
Merged-chr15-73061145-3	chr15	73061043	73061243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	61.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	182.92	201.22	253.28	202.31	242.19	257.76	196.98	203.83	233.86	233.48	234.66	153.19
Merged-chr1-170853773-3	chr1	170853688	170853888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 2 of 15)	intron (NM_001081304, intron 2 of 15)	13983.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	60.57	48.8	62.18	65.16	70.77	89.68	40.19	57.17	69.82	88.37	70.35	31.33
Merged-chr4-101284135-1	chr4	101284035	101284235	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18853.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	1.62	1.51	1.14	1.21	2.45	3.76	9.97	9.7	3.93	1.51	2.01	4.39
Merged-chr19-37175296-3	chr19	37175191	37175391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290827, intron 1 of 10)	intron (NM_001290827, intron 1 of 10)	772.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	38.36	39.24	39.93	41.02	40.09	32.3	43.85	48.98	28.13	17.57	41.71	19.74
Merged-chr16-22445061-3	chr16	22444956	22445156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5486.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	72.28	55.08	66.74	63.15	39.27	39.2	39.53	55.65	57.24	48.2	68.34	55.13
Merged-chr15-27670299-3	chr15	27670202	27670402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	11240.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	114.27	75.46	67.88	44.64	94.91	122.61	68.76	68.3	112.31	96.91	97.48	47.62
Merged-chr13-74245683-3	chr13	74245579	74245779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-36979.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	82.78	60.62	73.59	89.69	100.64	55.82	59.79	115.77	113.29	93.89	150.74	64.22
Merged-chr11-101302307-3	chr11	101302218	101302418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-32.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	25.44	25.91	26.24	29.36	43.77	39.51	24.91	21.14	51.93	54.73	38.69	37.28
Merged-chr9-87021990-3	chr9	87021939	87022139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	10.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	72.68	99.1	79.29	92.1	107.59	80.27	87.69	117.81	161.68	152.64	190.44	112.46
Merged-chr9-3032262-4	chr9	3032129	3032329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	6514.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	45.63	27.67	46.21	35.39	65.46	39.82	24.25	0.0	60.97	96.4	48.24	69.86
Merged-chr11-63131483-3	chr11	63131378	63131578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	21.0	NM_001302255	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	29.88	14.59	41.64	45.85	57.27	76.51	38.86	66.73	60.97	62.76	152.25	62.65
Merged-chr11-118130490-1	chr11	118130390	118130590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1271.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	17.36	13.33	3.42	5.63	0.0	1.25	1.66	1.63	2.56	0.0	2.51	5.95
Merged-chr11-4189304-3	chr11	4189200	4189400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	2467.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	27.05	29.18	22.25	26.95	34.36	36.69	31.22	39.7	29.5	30.13	43.21	23.49
Merged-chr17-69182261-3	chr17	69182170	69182370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22914.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	45.63	14.34	37.65	18.1	63.41	60.83	54.81	46.35	61.17	79.33	49.24	20.99
Merged-chr14-120137946-3	chr14	120137852	120138052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95517.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	118.72	101.11	120.94	134.74	146.46	168.7	135.53	169.85	136.11	146.61	179.89	105.26
Merged-chr17-43201060-3	chr17	43200958	43201158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42767.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	38.36	24.4	36.51	57.92	53.59	41.71	26.57	68.55	39.93	23.6	61.3	27.88
Merged-chr8-41364126-3	chr8	41364033	41364233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	10564.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	29.88	31.44	39.36	41.02	51.96	56.76	37.54	73.4	58.42	42.18	65.83	35.71
Merged-chr1-39530406-3	chr1	39530288	39530488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5313.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	23.82	18.86	38.79	23.33	33.96	38.57	18.6	32.41	27.34	17.07	38.19	19.74
Merged-chr6-145307458-3	chr6	145307363	145307563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	56911.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	144.16	115.2	184.83	151.63	187.37	185.64	149.48	230.3	178.79	174.73	251.24	131.26
Merged-chr3-131892171-1	chr3	131892071	131892271	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-193121.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.62	0.75	0.0	0.0	0.0	0.0	0.33	0.53	68.84	67.78	56.28	34.15
Merged-chr2-181601265-3	chr2	181601174	181601374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-45.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	89.24	91.81	100.97	88.08	96.96	129.51	72.75	90.73	130.6	105.44	149.74	106.51
Merged-chr11-115004237-3	chr11	115004153	115004353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2373.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	56.53	51.56	78.72	90.9	64.23	76.51	68.43	62.69	63.92	52.72	85.92	57.01
Merged-chr4-132944328-3	chr4	132944243	132944443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21792.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	19.38	16.85	37.65	20.11	45.0	39.2	50.49	49.65	50.75	53.73	51.76	33.21
Merged-chr11-70594401-3	chr11	70594287	70594487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-21507.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	32.3	21.88	21.11	22.52	34.36	34.81	15.94	19.82	41.11	37.16	38.19	17.23
Merged-chr16-78576768-3	chr16	78576651	78576851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-63.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	182.92	186.38	175.13	180.99	166.51	157.41	129.88	199.29	238.98	223.44	367.82	126.25
Merged-chr6-122874481-3	chr6	122874365	122874565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-92.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	69.45	76.21	82.15	61.13	72.82	101.6	45.18	61.51	108.97	130.55	95.47	57.33
Merged-chr18-70437633-3	chr18	70437512	70437712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34842.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	14.13	15.09	25.67	14.08	16.36	15.68	15.61	25.77	30.09	36.65	42.71	21.3
Merged-chr6-24665096-3	chr6	24664988	24665188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167745)	promoter-TSS (NM_001167745)	-93.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	172.82	156.7	191.67	149.22	222.55	201.94	183.69	210.48	232.29	202.35	309.53	112.15
Merged-chr14-54686799-3	chr14	54686691	54686891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023190, exon 1 of 19)	5' UTR (NM_023190, exon 1 of 19)	140.0	NM_001085473	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	176.86	161.73	82.15	96.93	170.6	183.44	75.07	75.95	232.49	316.83	172.85	104.94
Merged-chr2-128722425-3	chr2	128722316	128722516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	23501.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	43.21	49.3	27.38	19.31	66.68	54.88	33.88	54.95	59.79	62.76	43.72	40.41
Merged-chr12-76837649-3	chr12	76837500	76837700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145927, exon 1 of 12)	exon (NM_145927, exon 1 of 12)	133.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	56.53	59.61	53.05	85.67	54.41	63.34	60.79	64.68	67.07	65.27	85.42	55.13
Merged-chr7-122969837-3	chr7	122969725	122969925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	634.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	138.1	115.2	95.27	89.69	155.46	166.51	110.95	100.15	161.28	146.11	159.29	97.11
Merged-chr12-86726428-3	chr12	86726324	86726524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	36.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	60.17	73.95	70.74	88.89	75.68	89.37	90.35	69.2	78.68	68.79	118.59	69.86
Merged-chr19-12794838-3	chr19	12794729	12794929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053009, intron 1 of 10)	CpG	1294.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	89.64	71.18	73.02	77.62	72.82	94.07	60.79	65.94	85.36	79.83	112.56	62.65
Merged-chr16-37868356-4	chr16	37868247	37868447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177093)	promoter-TSS (NM_177093)	-53.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	52.49	40.75	46.78	31.37	58.09	73.38	23.92	53.47	97.95	105.44	107.53	65.47
Merged-chr14-37134746-3	chr14	37134635	37134835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	404.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	18.57	34.46	13.69	21.32	33.96	41.08	26.91	30.67	50.35	32.64	41.71	25.69
Merged-chr16-31935434-3	chr16	31935330	31935530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	1579.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	72.68	43.77	62.18	49.87	54.41	65.22	47.83	61.04	56.65	58.75	91.95	49.5
Merged-chr2-110017741-3	chr2	110017601	110017801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026613)	promoter-TSS (NM_026613)	-116.0	NM_001355581	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	92.87	75.46	74.73	82.45	120.28	106.61	106.63	139.23	71.59	58.75	89.44	49.18
Merged-chr6-116338029-3	chr6	116337927	116338127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302383)	promoter-TSS (NM_001302383)	5.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	66.22	57.85	65.6	46.25	71.18	80.27	44.18	74.33	89.49	74.31	71.35	60.15
Merged-chr4-41741397-3	chr4	41741296	41741496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286551)	promoter-TSS (NM_001286551)	-37.0	NM_001286551	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	45.63	40.24	43.35	49.47	55.64	58.01	42.85	66.14	70.22	54.73	110.55	52.32
Merged-chr11-100343213-3	chr11	100343086	100343286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	8779.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	46.03	31.94	49.63	47.06	51.14	50.17	43.18	30.7	47.21	29.12	45.22	23.18
Merged-chr13-102717184-3	chr13	102717070	102717270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23612.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	12.11	21.88	25.1	22.12	22.91	23.52	25.24	34.26	31.08	18.08	31.15	17.54
Merged-chr16-92700210-3	chr16	92700126	92700326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2897.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	31.5	23.9	46.78	38.21	31.91	15.99	21.26	34.65	34.81	20.59	37.18	31.95
Merged-chr13-67724320-3	chr13	67724224	67724424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	4849.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	26.25	18.11	26.24	24.53	24.14	24.77	20.59	20.72	57.24	53.73	56.28	22.56
Merged-chr15-99252095-3	chr15	99251993	99252193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	-132.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	165.96	133.56	139.76	100.15	129.28	162.12	67.43	89.47	162.27	185.78	138.69	99.93
Merged-chr4-41314972-3	chr4	41314869	41315069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026893)	promoter-TSS (NM_026893)	-68.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	114.27	101.62	123.22	97.33	110.46	150.83	102.97	109.21	133.94	151.13	158.78	68.29
Merged-chr2-49451615-3	chr2	49451533	49451733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172663, exon 1 of 14)	5' UTR (NM_172663, exon 1 of 14)	147.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	42.4	69.67	60.47	85.67	50.73	61.77	79.39	60.08	71.0	88.37	79.39	46.05
Merged-chr2-164084199-3	chr2	164084084	164084284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	10006.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	37.15	28.42	50.77	44.64	54.0	34.18	21.59	50.24	51.14	35.15	55.78	32.27
Merged-chr7-30535166-3	chr7	30535070	30535270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178252)	promoter-TSS (NM_178252)	-110.0	NM_001289682	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	89.24	69.67	70.74	80.44	71.59	108.18	64.77	80.75	89.49	123.52	125.62	51.38
Merged-chr10-117867483-3	chr10	117867374	117867574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21500.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	33.92	40.75	25.1	9.25	35.59	57.07	25.91	10.91	62.55	56.24	45.22	17.54
Merged-chr10-81244803-3	chr10	81244708	81244908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034895, intron 8 of 17)	intron (NM_001034895, intron 8 of 17)	-8127.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	20.19	19.37	13.69	13.27	20.86	27.59	23.25	17.97	41.5	33.14	40.7	19.11
Merged-chr2-160214772-3	chr2	160214670	160214870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	112724.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	84.39	64.64	77.58	72.8	90.0	95.64	110.61	99.14	82.81	98.91	129.64	74.24
Merged-chr4-7170369-1	chr4	7170269	7170469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-179646.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	35.13	31.69	42.78	55.91	0.82	0.31	6.31	3.48	3.34	3.51	15.07	1.88
Merged-chr10-96616876-3	chr10	96616760	96616960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-141.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	285.48	242.22	253.28	224.83	293.33	345.87	212.92	238.54	381.77	416.25	442.69	242.47
Merged-chr10-21376878-1	chr10	21376778	21376978	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178713)	promoter-TSS (NM_178713)	-422.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	5.65	2.52	10.27	3.62	1.64	3.45	8.64	9.9	3.74	4.02	11.56	3.13
Merged-chr19-32309597-3	chr19	32309497	32309697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	MTD|LTR|ERVL-MaLR	39719.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	69.86	61.37	58.19	53.49	67.09	109.75	63.78	40.57	71.99	49.21	83.91	25.37
Merged-chr17-64661521-3	chr17	64661426	64661626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 6 of 21)	RLTR9E|LTR|ERVK	59877.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	27.86	11.57	19.97	37.0	33.14	12.54	15.61	24.95	25.96	22.59	27.64	18.8
Merged-chr17-29478478-3	chr17	29478406	29478606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-12539.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	20.59	26.91	23.39	26.55	41.73	38.57	23.92	31.54	40.52	43.18	46.73	36.97
Merged-chr6-34481387-3	chr6	34481293	34481493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	5037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	16.96	18.36	33.09	46.25	34.77	25.09	18.27	39.11	21.05	26.11	40.2	24.43
Merged-chr7-28375707-3	chr7	28375603	28375803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-3041.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	116.29	94.57	164.86	131.52	140.73	140.17	155.79	161.44	173.09	145.11	247.22	104.63
Merged-chr16-31274820-1	chr16	31274720	31274920	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025800, intron 1 of 5)	CpG	457.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	16.56	14.34	24.53	22.12	18.82	21.95	28.57	14.92	22.23	19.08	21.61	15.66
Merged-chr11-29986471-3	chr11	29986354	29986554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 2 of 41)	RLTR20C|LTR|ERVK	39579.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	7.27	11.32	14.26	19.71	16.77	18.81	15.28	25.23	24.59	21.09	33.67	11.59
Merged-chr13-12461517-3	chr13	12461425	12461625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018886, exon 1 of 10)	5' UTR (NM_018886, exon 1 of 10)	213.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	104.58	89.29	104.39	100.95	117.0	141.11	81.05	129.0	181.35	144.61	219.08	104.32
Merged-chr13-60724126-3	chr13	60723953	60724153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 11 of 26)	(CA)n|Simple_repeat|Simple_repeat	62311.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	36.75	20.37	25.1	34.99	71.59	65.85	62.78	51.17	28.91	29.12	17.59	16.92
Merged-chr1-64374075-3	chr1	64373994	64374194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158710.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	20.59	14.09	14.83	18.9	60.14	40.76	32.22	42.45	40.91	42.68	34.67	29.76
Merged-chr2-91083126-3	chr2	91083064	91083264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12849.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	47.65	49.3	90.7	68.37	67.5	77.77	81.38	95.02	93.43	52.72	92.46	41.35
Merged-chr8-119838561-3	chr8	119838464	119838664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	ID_B1|SINE|B4	2015.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	35.94	36.97	49.06	34.99	49.09	60.52	44.84	43.91	77.5	60.25	88.44	37.59
Merged-chr11-98836808-3	chr11	98836717	98836917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	32.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	39.98	41.0	27.95	28.56	39.68	52.37	27.24	26.92	34.42	25.11	28.64	29.13
Merged-chr2-22822483-3	chr2	22822384	22822584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48157.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	15.75	12.32	29.09	27.35	23.32	26.03	17.94	44.44	31.67	7.53	31.15	16.29
Merged-chr17-84328647-1	chr17	84328547	84328747	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	137561.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.65	3.02	8.56	14.88	7.36	3.76	12.29	14.89	6.29	10.54	13.57	3.45
Merged-chr17-26252959-3	chr17	26252873	26253073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	63.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	30.28	17.1	25.1	35.8	33.96	24.46	19.6	31.37	20.46	24.1	22.11	15.04
Merged-chr14-103481759-3	chr14	103481659	103481859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31582.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	54.51	48.29	75.87	88.89	65.05	67.1	77.4	110.55	63.73	56.74	81.9	57.33
Merged-chr4-9116014-3	chr4	9115901	9116101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153292.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	72.28	43.77	74.73	63.55	81.0	75.26	50.49	80.92	112.11	107.45	107.53	64.85
Merged-chr6-91716452-3	chr6	91716342	91716542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	32375.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	68.24	44.77	79.29	63.55	93.68	90.62	49.49	67.49	90.87	90.38	89.44	56.7
Merged-chr12-71003873-3	chr12	71003726	71003926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	B2_Mm1t|SINE|B2	11997.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	47.24	17.36	39.36	49.87	31.09	36.69	24.58	16.65	36.39	46.19	18.59	14.41
Merged-chr2-152806710-1	chr2	152806610	152806810	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	L2|LINE|L2	21779.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	5.65	4.02	6.28	9.65	19.23	14.11	13.62	14.69	5.31	10.04	9.55	11.59
Merged-chr5-140765618-3	chr5	140765540	140765740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	41513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	35.53	21.13	14.26	23.33	44.59	26.34	28.9	38.86	25.18	21.09	16.58	18.17
Merged-chr7-98361423-3	chr7	98361312	98361512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-84.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	44.82	36.22	28.52	31.77	46.64	35.12	23.92	37.32	52.12	51.21	51.25	27.57
Merged-chr3-95357225-3	chr3	95357111	95357311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018877)	promoter-TSS (NM_018877)	-9.0	NM_001163642	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	39.98	37.48	26.24	32.98	40.5	46.41	15.61	32.89	47.8	48.7	30.65	30.07
Merged-chr13-23423929-3	chr13	23423820	23424020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-54.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	77.93	60.37	61.61	67.57	56.87	61.46	44.18	50.72	80.84	103.94	80.4	55.76
Merged-chr19-29641230-3	chr19	29641128	29641328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	7187.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	68.65	73.7	71.88	65.96	88.37	105.67	68.76	81.03	77.5	106.45	96.48	39.16
Merged-chr5-53590444-3	chr5	53590338	53590538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277116)	promoter-TSS (NM_001277116)	-48.0	NM_001359152	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	83.59	87.28	86.14	57.92	72.41	90.94	72.41	76.54	97.36	138.58	129.64	68.29
Merged-chr1-85601019-3	chr1	85600917	85601117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013817, exon 1 of 17)	5' UTR (NM_001013817, exon 1 of 17)	314.0	NM_001013817	434484.0	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	25.04	21.38	37.65	22.52	51.96	46.41	18.93	19.74	30.49	35.15	38.69	17.54
Merged-chr2-155979461-3	chr2	155979356	155979556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130000, intron 19 of 32)	intron (NM_001130000, intron 19 of 32)	22898.0	NM_177217	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	29.88	15.34	22.25	26.14	27.41	42.96	29.56	36.73	22.62	37.16	39.7	29.45
Merged-chr8-126908939-3	chr8	126908814	126909014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37007.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	58.95	56.34	83.86	57.92	83.05	90.94	57.13	80.13	85.17	83.35	121.1	68.92
Merged-chr16-91002399-3	chr16	91002315	91002515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	8680.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	30.28	24.9	28.52	29.36	42.55	31.04	24.25	29.36	32.85	32.13	36.68	39.16
Merged-chr17-70834629-3	chr17	70834552	70834752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12125.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	47.24	64.14	51.34	46.25	64.64	64.28	34.88	43.26	56.84	67.28	74.37	52.94
Merged-chr2-153109055-3	chr2	153108956	153109156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	588.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	43.21	43.01	45.64	32.58	30.68	40.76	12.62	26.94	52.71	36.65	69.34	29.45
Merged-chr11-116433992-3	chr11	116433884	116434084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-110.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	291.94	282.97	273.25	244.54	328.51	380.68	238.83	293.22	331.81	337.42	418.07	210.2
Merged-chr6-114458390-3	chr6	114458272	114458472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-150.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	86.01	102.37	138.62	109.4	124.37	161.8	85.04	116.13	139.06	160.67	166.32	99.93
Merged-chr15-39962632-3	chr15	39962555	39962755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045719)	promoter-TSS (NR_045719)	6.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	31.5	19.12	23.96	34.19	34.77	36.37	49.49	48.59	23.21	36.15	34.67	17.23
Merged-chr8-124520739-3	chr8	124520628	124520828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029746)	promoter-TSS (NM_029746)	-39.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	117.5	106.4	102.11	118.25	126.41	116.65	78.39	98.55	133.16	135.07	202.5	99.62
Merged-chr18-82569050-3	chr18	82568956	82569156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	14548.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	21.0	14.34	18.83	16.09	28.64	21.01	13.95	22.15	23.6	21.59	29.65	17.86
Merged-chr2-36272786-3	chr2	36272700	36272900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42374.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	25.44	19.87	26.24	25.34	27.0	16.31	13.29	24.25	23.6	23.1	12.56	12.53
Merged-chr19-55660353-3	chr19	55660237	55660437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41867.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	150.21	135.57	164.86	189.03	183.69	190.97	138.18	146.02	180.76	181.26	219.58	90.53
Merged-chr12-101083685-3	chr12	101083605	101083805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-3.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	61.38	47.54	45.64	70.79	87.14	66.16	30.89	71.5	97.95	107.95	104.01	80.82
Merged-chr6-124808863-3	chr6	124808777	124808977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306052)	promoter-TSS (NM_001306052)	-8.0	NM_001306052	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	30.69	31.94	23.39	20.51	30.27	35.12	24.25	22.21	42.29	54.23	55.78	25.37
Merged-chr11-83737472-3	chr11	83737371	83737571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-9469.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	71.88	65.15	71.31	48.26	85.09	119.47	51.82	62.97	94.41	99.42	91.45	46.68
Merged-chr5-129002776-3	chr5	129002675	129002875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	5797.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	67.43	44.02	61.61	111.01	90.41	75.26	117.92	132.93	65.1	41.67	117.58	47.93
Merged-chr14-122060860-3	chr14	122060773	122060973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26199.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	60.57	52.57	42.78	39.82	28.23	86.86	30.23	51.84	80.64	75.82	78.39	21.3
Merged-chr3-144677661-3	chr3	144677602	144677802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42633.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	38.76	49.8	69.6	66.36	65.87	56.44	46.5	66.31	60.19	40.17	68.84	34.77
Merged-chr5-137030232-3	chr5	137030149	137030349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039385)	promoter-TSS (NM_001039385)	-46.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	45.63	29.93	33.66	39.01	38.46	42.33	32.88	32.33	50.55	47.7	60.3	44.48
Merged-chr18-53921166-3	chr18	53921076	53921276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59063.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	34.32	14.09	47.92	26.14	27.41	25.71	21.59	41.97	53.89	42.18	66.33	24.75
Merged-chr15-81523404-3	chr15	81523329	81523529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57113.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	40.78	31.19	25.1	32.58	52.37	40.76	31.22	32.5	40.91	50.21	53.77	30.07
Merged-chr13-38193029-2	chr13	38192932	38193132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023842, exon 23 of 24)	exon (NM_023842, exon 23 of 24)	-11907.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	32.3	34.71	71.31	55.5	37.64	37.63	31.22	68.13	0.79	4.52	0.5	0.0
Merged-chr18-80413423-3	chr18	80413323	80413523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-49169.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	47.65	40.75	66.17	67.97	31.91	52.99	51.49	86.58	37.57	8.03	35.68	10.02
Merged-chr16-91398278-3	chr16	91398167	91398367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7968.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	148.19	147.9	192.81	119.05	198.82	199.43	176.05	180.84	211.83	247.54	280.89	108.39
Merged-chr12-113141523-3	chr12	113141417	113141617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347443, intron 1 of 6)	intron (NM_001347443, intron 1 of 6)	912.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	33.92	13.33	19.4	29.76	20.86	31.67	27.57	34.37	24.39	21.09	64.82	19.74
Merged-chr16-85084350-3	chr16	85084245	85084445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	89362.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	23.42	23.39	37.08	37.4	44.59	36.06	48.83	53.44	47.8	32.64	78.89	39.16
Merged-chr12-100199486-3	chr12	100199367	100199567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	32.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	96.1	91.3	74.16	61.13	100.64	103.17	65.77	76.51	117.23	110.46	120.09	67.04
Merged-chr4-150509282-3	chr4	150509187	150509387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 9 of 22)	intron (NM_001085492, intron 9 of 22)	142887.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	32.71	19.12	66.74	47.86	33.14	41.08	45.18	74.58	38.16	24.1	61.3	42.92
Merged-chr15-51951674-3	chr15	51951564	51951764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	40096.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	34.32	23.64	20.54	37.81	27.82	32.93	35.21	45.95	38.55	47.2	35.17	37.28
Merged-chr10-17796289-3	chr10	17796225	17796425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_138628, exon 1 of 10)	5' UTR (NM_138628, exon 1 of 10)	106.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	12.92	19.87	6.85	14.88	33.14	34.18	25.91	25.23	28.52	44.19	30.65	20.68
Merged-chr17-46144262-3	chr17	46144164	46144364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029338)	promoter-TSS (NM_029338)	-66.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	41.99	45.28	33.66	43.84	47.46	66.48	53.81	58.65	59.4	58.24	75.87	39.47
Merged-chr2-132710688-3	chr2	132710576	132710776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	20078.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	22.21	19.12	22.25	31.37	34.77	39.2	38.53	47.22	28.52	17.57	30.65	16.92
Merged-chr7-142449361-3	chr7	142449258	142449458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	6890.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	50.47	37.48	62.18	60.33	18.0	27.91	14.95	17.36	63.92	79.33	76.38	66.41
Merged-chr19-34515928-3	chr19	34515836	34516036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	11538.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	223.3	188.9	211.64	251.37	213.14	258.7	188.01	230.64	204.36	193.31	251.24	140.03
Merged-chr6-13871149-3	chr6	13871071	13871271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045995)	promoter-TSS (NR_045995)	347.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	31.9	36.72	39.93	29.76	27.0	38.26	17.27	30.0	66.48	37.66	58.79	36.65
Merged-chr11-106736446-3	chr11	106736335	106736535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-14791.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	13.73	17.1	30.23	25.74	32.73	25.71	22.59	23.52	25.96	20.59	34.67	14.41
Merged-chr19-6276719-3	chr19	6276630	6276830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-166.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	206.74	222.85	213.35	164.9	226.23	304.48	171.4	160.8	246.84	291.72	291.94	149.43
Merged-chr2-130728237-3	chr2	130728136	130728336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-30717.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	28.67	19.62	29.66	22.52	31.91	47.98	34.88	41.58	32.06	28.62	33.16	29.45
Merged-chr2-75696638-3	chr2	75696542	75696742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	8021.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	38.76	17.1	15.97	26.55	41.73	36.37	26.91	34.15	28.72	25.11	30.65	21.3
Merged-chr16-36931007-3	chr16	36930907	36931107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-3976.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	78.74	53.83	45.07	54.7	66.68	83.1	45.18	47.64	75.72	71.8	79.39	34.46
Merged-chr10-8886138-3	chr10	8886090	8886290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175155)	promoter-TSS (NM_175155)	-120.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	58.55	92.56	57.05	62.74	87.14	131.07	86.7	56.16	90.87	134.56	86.93	71.11
Merged-chr17-33999659-3	chr17	33999565	33999765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001892, intron 2 of 7)	CpG-6270	668.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	45.63	69.67	66.74	39.01	66.68	85.61	42.19	21.25	106.8	76.82	85.42	37.59
Merged-chr2-161109177-3	chr2	161109076	161109276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-90.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	222.9	194.68	278.38	247.76	229.1	245.84	223.55	343.66	312.14	264.61	353.25	218.97
Merged-chr2-52424919-3	chr2	52424825	52425025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-51.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	77.53	79.99	96.41	76.82	95.73	118.53	44.51	90.39	117.62	124.02	158.78	73.62
Merged-chr4-152153965-3	chr4	152153874	152154074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1767.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	75.91	49.8	107.25	86.47	78.55	84.35	74.07	94.71	79.27	75.32	135.17	64.22
Merged-chr3-108562458-3	chr3	108562357	108562557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	9.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	191.0	173.81	132.92	170.53	188.6	246.15	138.52	133.74	214.19	215.91	221.59	139.72
Merged-chr3-148336321-3	chr3	148336215	148336415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	618320.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	22.61	26.41	21.68	38.21	18.0	17.25	28.9	32.02	18.29	18.58	23.62	14.72
Merged-chr11-97884196-3	chr11	97884073	97884273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081435)	promoter-TSS (NM_001081435)	-19.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	74.7	94.07	69.6	84.46	100.64	112.26	56.47	69.25	125.88	99.92	119.09	60.15
Merged-chr12-76319087-3	chr12	76318970	76319170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138745, intron 27 of 27)	HAL1|LINE|L1	-5821.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	104.58	83.76	119.23	135.14	90.82	120.73	94.34	157.18	149.68	133.56	167.33	98.99
Merged-chr1-194879801-3	chr1	194879696	194879896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57795.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	25.44	25.15	31.95	26.14	39.27	48.92	38.86	47.36	39.93	44.69	51.76	26.31
Merged-chr12-110992356-3	chr12	110992251	110992451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2047.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	46.84	39.74	31.95	46.66	29.86	58.01	53.48	35.27	28.91	43.18	43.72	37.59
Merged-chr4-132345677-3	chr4	132345554	132345754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197082)	promoter-TSS (NM_001197082)	96.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	29.48	39.49	38.22	26.55	31.09	41.08	40.86	18.81	31.86	42.18	30.65	31.95
Merged-chr11-52231994-3	chr11	52231877	52232077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011543)	promoter-TSS (NM_011543)	-18.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	65.41	76.21	49.63	46.66	57.27	71.81	43.18	41.58	76.91	85.86	72.36	44.17
Merged-chr3-116649078-3	chr3	116648980	116649180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13597.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	44.42	24.15	49.06	54.7	51.14	36.06	35.21	55.91	33.04	26.61	31.15	42.92
Merged-chr19-43930651-3	chr19	43930521	43930721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9577.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	26.25	27.17	37.65	31.37	37.23	32.93	21.92	43.71	26.36	22.59	49.24	19.42
Merged-chr12-85345708-3	chr12	85345604	85345804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-6342.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	52.09	33.45	54.19	67.57	59.32	64.6	46.5	56.61	42.68	40.17	55.78	34.15
Merged-chr7-4659111-3	chr7	4659043	4659243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172894)	promoter-TSS (NM_172894)	-193.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	120.73	127.27	108.39	116.64	109.23	116.96	79.06	98.22	119.59	99.42	158.78	74.56
Merged-chr1-191098385-3	chr1	191098277	191098477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-37.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	76.72	68.92	59.33	70.38	70.77	106.3	54.14	66.42	62.94	75.32	70.35	30.39
Merged-chr11-60776846-3	chr11	60776737	60776937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	528.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	33.52	24.9	19.97	14.88	44.59	61.15	24.58	31.88	51.73	51.72	50.75	20.68
Merged-chr9-120011263-3	chr9	120011168	120011368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12330.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	89.64	69.17	93.55	65.16	99.82	84.04	38.2	57.87	99.52	92.39	129.14	68.61
Merged-chr3-58508537-3	chr3	58508442	58508642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-17279.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	40.78	27.42	47.92	39.82	55.23	51.11	48.83	76.18	36.58	44.19	51.25	46.05
Merged-chr18-31804091-3	chr18	31804009	31804209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170966)	promoter-TSS (NM_001170966)	52.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	33.92	33.45	35.37	27.35	56.87	38.88	49.49	45.93	46.03	47.7	72.36	29.76
Merged-chr13-107954471-3	chr13	107954366	107954566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64402.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	64.2	48.54	70.17	59.93	45.41	63.34	66.77	78.45	49.37	50.21	90.95	55.13
Merged-chr2-69135751-3	chr2	69135654	69135854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-46.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	29.88	18.36	11.41	23.33	23.32	33.87	19.6	27.56	33.83	31.13	72.86	14.72
Merged-chr17-71552003-3	chr17	71551894	71552094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-67.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	60.57	48.54	67.88	46.25	65.87	83.1	51.15	74.69	93.62	89.37	105.02	62.97
Merged-chr7-5062217-3	chr7	5062134	5062334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	91.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	91.26	111.43	62.75	92.51	70.77	112.26	62.12	64.63	102.47	132.56	92.96	72.68
Merged-chr14-73180848-3	chr14	73180757	73180957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	25994.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	37.15	28.17	26.24	26.14	36.41	49.86	21.92	33.48	49.96	26.61	48.74	17.23
Merged-chr15-59082141-3	chr15	59082042	59082242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146180)	promoter-TSS (NM_001146180)	-116.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	35.13	34.96	23.39	18.9	32.32	33.24	23.92	41.02	59.79	49.21	55.78	19.42
Merged-chr16-3744471-2	chr16	3744370	3744570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_148924, exon 1 of 6)	exon (NM_148924, exon 1 of 6)	371.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	30.28	34.71	15.4	34.19	29.46	50.17	26.91	26.36	54.68	35.15	40.7	30.07
Merged-chr4-41723227-3	chr4	41723133	41723333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016890)	promoter-TSS (NM_016890)	-70.0	NM_016890	53598.0	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	67.84	67.91	55.33	76.42	88.78	76.2	50.16	58.74	123.32	136.07	126.12	72.99
Merged-chr19-6996157-3	chr19	6996056	6996256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	25.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	47.65	31.94	35.94	28.56	39.27	36.69	21.26	35.16	50.55	39.16	58.79	15.35
Merged-chr7-99134084-3	chr7	99133984	99134184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	7060.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	62.18	38.48	64.46	58.32	52.77	48.29	50.49	58.65	45.63	32.64	47.74	35.4
Merged-chr4-10874544-3	chr4	10874466	10874666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	68.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	46.84	36.22	30.23	28.15	68.32	39.51	38.53	50.47	77.89	70.8	85.92	49.18
Merged-chr19-37376300-3	chr19	37376220	37376420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-83.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	73.09	48.29	57.62	41.83	70.77	62.09	52.82	52.01	120.77	61.26	97.48	57.64
Merged-chr15-37972007-3	chr15	37971896	37972096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-10941.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	128.81	64.14	150.6	132.73	91.64	113.2	95.0	156.51	129.81	98.91	167.83	98.68
Merged-chr12-71831001-3	chr12	71830914	71831114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	-54.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	226.53	239.96	256.14	271.89	261.01	332.39	229.86	306.48	330.44	346.45	454.75	180.75
Merged-chr15-25828654-3	chr15	25828529	25828729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14669.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	94.89	98.1	109.53	169.73	143.6	154.59	161.44	216.48	154.01	146.61	232.15	123.74
Merged-chrUn_JH584304-22491-1	chrUn_JH584304	22391	22591	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37198.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	28.91	29.62	26.13	25.06
Merged-chr6-29467685-3	chr6	29467583	29467783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025381)	promoter-TSS (NM_025381)	-100.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	68.24	61.62	69.6	66.36	68.73	87.49	29.23	50.66	86.35	93.89	79.39	57.64
Merged-chr8-25017126-3	chr8	25017030	25017230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	-81.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	242.68	239.71	208.79	259.02	259.78	324.55	210.93	224.02	276.94	330.39	424.1	174.49
Merged-chr2-132266339-3	chr2	132266248	132266448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	3200.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	34.73	34.21	86.14	44.24	78.96	78.08	71.75	90.81	76.91	64.77	104.01	60.46
Merged-chr1-190911745-3	chr1	190911653	190911853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178775)	promoter-TSS (NM_178775)	17.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	44.42	38.23	37.08	48.26	50.32	57.07	41.52	53.94	39.93	35.65	31.15	31.95
Merged-chr5-76588704-3	chr5	76588585	76588785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3029.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	52.49	58.1	79.29	61.94	87.96	92.5	64.44	104.08	100.11	119.0	154.76	62.97
Merged-chr1-183635264-1	chr1	183635164	183635364	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113713.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0.0	0.0	0.0	0.0	0.0	1.25	2.66	0.0	13.37	22.59	15.07	10.34
Merged-chr1-131146514-3	chr1	131146413	131146613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-6694.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	34.32	19.12	40.5	35.8	32.73	26.97	22.92	33.62	39.73	26.11	47.23	26.0
Merged-chr7-83631927-3	chr7	83631825	83632025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-92.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	160.71	147.65	168.86	195.07	164.87	154.9	128.88	201.28	210.46	155.65	247.22	113.4
Merged-chr11-96916642-3	chr11	96916545	96916745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-131.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	152.63	128.78	155.73	131.12	147.28	200.69	77.73	123.79	186.46	154.15	171.85	90.53
Merged-chr3-95888866-3	chr3	95888764	95888964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346514, exon 3 of 6)	exon (NM_001346514, exon 3 of 6)	3141.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	28.67	23.64	23.96	43.44	27.41	45.47	25.24	32.69	43.86	45.19	27.13	26.63
Merged-chr9-21426242-3	chr9	21426138	21426338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	1330.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	18.57	14.84	27.95	14.88	24.55	21.64	13.95	19.99	24.0	22.59	34.67	22.56
Merged-chr13-24761987-3	chr13	24761885	24762085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020567)	promoter-TSS (NM_020567)	-48.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	71.07	42.76	47.92	61.13	67.91	55.82	44.84	65.72	65.89	62.76	75.37	48.24
Merged-chr8-61606988-3	chr8	61606902	61607102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	(CA)n|Simple_repeat|Simple_repeat	-15833.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	117.1	158.46	140.33	170.53	176.32	211.35	177.05	155.27	202.98	252.06	274.36	141.91
Merged-chr6-83636596-3	chr6	83636493	83636693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19523.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	39.98	21.13	46.21	67.17	51.14	24.46	64.44	112.26	38.55	50.21	67.84	34.77
Merged-chr6-54972520-3	chr6	54972400	54972600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	112.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	21.0	25.4	27.38	28.96	32.32	29.79	20.59	29.89	35.4	32.13	25.12	22.87
Merged-chr9-66114520-3	chr9	66114400	66114600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10386.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	38.36	39.99	48.49	21.72	34.36	68.36	36.21	32.75	32.45	30.63	41.2	24.12
Merged-chr11-98358366-3	chr11	98358268	98358468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	0.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	27.05	22.13	45.64	40.62	47.05	37.94	26.91	33.67	51.14	54.73	50.25	29.76
Merged-chr11-100626793-3	chr11	100626692	100626892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3837.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	131.64	136.83	138.05	148.01	117.82	101.28	91.68	124.09	181.94	170.21	212.55	116.22
Merged-chr13-35906125-3	chr13	35906075	35906275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145938, intron 1 of 7)	CpG	172.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	39.98	45.78	43.35	59.93	42.14	68.99	64.44	59.86	44.25	46.7	52.76	53.26
Merged-chr4-136148709-4	chr4	136148604	136148804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4882.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	29.48	14.09	11.98	23.73	32.73	25.71	11.63	22.68	21.83	22.09	18.59	17.23
Merged-chr14-31402201-3	chr14	31402113	31402313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	L1M3|LINE|L1	15464.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	37.55	26.66	37.65	33.38	77.32	37.32	55.14	77.33	50.35	38.16	53.77	34.15
Merged-chr7-142061030-3	chr7	142060943	142061143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028308)	promoter-TSS (NM_028308)	-9.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	42.8	49.05	52.48	50.27	61.77	67.42	34.88	79.37	79.86	63.77	94.47	40.41
Merged-chr16-93084513-3	chr16	93084426	93084626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258452.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	93.28	75.46	118.08	99.75	66.68	102.22	50.16	52.77	113.29	95.4	141.2	62.65
Merged-chr10-20312003-1	chr10	20311903	20312103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-466.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	41.99	37.23	53.05	36.2	39.27	53.31	26.24	39.81	66.68	60.25	75.37	29.13
Merged-chr17-28691262-3	chr17	28691176	28691376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011951)	promoter-TSS (NM_011951)	-66.0	NM_001168508	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	146.98	158.71	115.8	120.26	131.32	169.64	114.93	98.44	190.59	218.42	170.34	102.75
Merged-chr14-77034723-3	chr14	77034633	77034833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172488, intron 3 of 7)	intron (NM_172488, intron 3 of 7)	1884.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	109.83	95.33	102.11	70.38	106.78	155.53	66.77	85.63	157.74	155.65	160.79	85.52
Merged-chr8-25994155-3	chr8	25994045	25994245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029037)	promoter-TSS (NM_029037)	-24.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	29.48	29.68	31.95	35.8	42.55	38.88	27.24	37.57	47.6	38.16	57.79	32.89
Merged-chr1-7088899-3	chr1	7088828	7089028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	8.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	434.89	413.51	447.24	480.23	513.02	509.24	432.15	477.06	707.88	700.94	800.96	395.66
Merged-chr1-165618525-3	chr1	165618427	165618627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16014.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	33.11	11.57	35.94	43.44	32.73	26.97	39.53	53.69	51.34	31.13	53.26	31.33
Merged-chr7-16924153-3	chr7	16924065	16924265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-133.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	198.67	225.37	220.2	185.01	211.51	297.89	206.28	211.12	254.51	241.01	286.92	129.38
Merged-chr11-106273041-3	chr11	106272938	106273138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-66.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	171.21	175.31	151.17	155.65	180.01	242.71	109.62	128.22	267.89	263.1	233.65	136.9
Merged-chr8-120363953-3	chr8	120363856	120364056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-124910.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	41.99	21.13	55.33	32.58	46.23	33.87	58.13	97.35	56.45	21.09	48.24	36.65
Merged-chr6-134021011-3	chr6	134020903	134021103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14697.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	27.86	38.74	23.96	16.89	50.73	77.14	32.55	39.34	81.43	69.79	69.85	36.03
Merged-chr8-18616267-1	chr8	18616167	18616367	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173189, intron 3 of 13)	intron (NM_173189, intron 3 of 13)	21136.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	3.23	7.55	4.56	4.42	11.05	5.64	1.33	10.99	5.9	9.04	3.52	4.07
Merged-chr6-72389683-3	chr6	72389597	72389797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	970.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	33.11	24.65	29.09	26.55	31.91	34.49	21.26	42.08	37.96	23.1	53.77	25.06
Merged-chr6-87511146-3	chr6	87511042	87511242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-14815.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	44.01	34.46	57.62	42.63	51.55	50.8	45.84	58.46	54.48	45.19	60.3	45.42
Merged-chr3-65975530-3	chr3	65975431	65975631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17282.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	44.42	45.02	66.17	39.82	62.59	71.81	37.87	53.8	66.48	83.85	88.44	42.29
Merged-chr4-47011162-3	chr4	47011054	47011254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19440.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	69.05	66.4	63.32	76.02	84.68	80.27	82.71	83.97	66.48	56.74	82.41	49.5
Merged-chr1-97676370-3	chr1	97676273	97676473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-14355.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	26.25	28.42	45.07	42.63	37.64	32.3	28.9	53.75	50.55	59.25	48.74	23.49
Merged-chr6-31123097-3	chr6	31122983	31123183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	-59990.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	21.0	24.65	44.5	21.32	20.86	40.45	34.55	34.74	42.48	41.17	60.3	26.31
Merged-chr7-5061403-5	chr7	5061290	5061490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	-753.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	32.3	35.72	31.95	43.84	48.68	46.72	26.57	23.78	43.47	50.71	42.71	31.01
Merged-chr2-144009244-3	chr2	144009140	144009340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2023.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	39.98	28.93	38.22	39.42	34.77	42.02	43.85	42.22	38.16	41.67	64.32	26.94
Merged-chr7-24134166-3	chr7	24134061	24134261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153441, exon 2 of 4)	non-coding (NR_153441, exon 2 of 4)	1789.0	NR_153441	56525.0	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	33.11	15.85	35.94	51.48	47.05	37.0	29.56	55.63	59.6	49.21	69.34	51.06
Merged-chr4-129619112-3	chr4	129619021	129619221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198026)	promoter-TSS (NM_198026)	-28.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	31.9	33.45	47.35	22.12	38.86	40.14	18.93	27.79	34.62	39.67	44.22	26.94
Merged-chr18-73816619-3	chr18	73816517	73816717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1225.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	77.53	53.58	65.03	78.83	91.64	83.72	82.05	148.21	101.49	63.27	132.15	74.24
Merged-chr1-58761574-3	chr1	58761488	58761688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31036.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	69.05	72.44	42.21	43.44	83.87	119.78	55.14	76.29	92.64	98.41	73.36	26.63
Merged-chr1-135534917-3	chr1	135534814	135535014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	50441.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	70.26	58.86	60.47	36.2	55.64	80.9	52.48	59.64	44.84	40.67	42.71	29.76
Merged-chr14-21813422-3	chr14	21813323	21813523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18138.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	29.07	22.64	34.8	21.32	17.18	31.04	12.29	27.03	47.4	41.67	53.26	24.12
Merged-chr2-103073609-3	chr2	103073523	103073723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019735)	promoter-TSS (NM_019735)	-52.0	NM_001355474	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	212.8	152.17	175.7	199.09	222.55	228.91	155.12	217.77	233.27	246.53	294.45	185.45
Merged-chr7-4149916-3	chr7	4149831	4150031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175529)	promoter-TSS (NM_175529)	-59.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	81.57	69.17	98.12	77.62	104.73	100.03	60.79	83.97	106.41	130.55	124.11	76.12
Merged-chr4-107889996-4	chr4	107889905	107890105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028754, exon 1 of 7)	exon (NM_028754, exon 1 of 7)	106.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	37.55	43.77	61.04	43.84	42.14	51.43	43.85	36.2	45.63	59.75	83.41	60.77
Merged-chrX-166661966-3	chrX	166661823	166662023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046015)	promoter-TSS (NR_046015)	-102.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	72.68	57.1	79.86	82.85	87.55	100.97	54.14	76.01	71.4	79.33	107.03	44.8
Merged-chr7-80032965-3	chr7	80032867	80033067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6739.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	39.98	30.94	39.36	32.58	44.18	50.8	52.15	53.8	26.16	36.65	51.25	34.77
Merged-chr7-101537767-3	chr7	101537649	101537849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18053.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	25.44	23.39	35.37	21.72	28.23	29.79	12.29	21.39	36.19	28.12	19.09	17.54
Merged-chr19-3325534-3	chr19	3325424	3325624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 1 of 18)	CpG	2223.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	115.49	84.01	103.82	83.26	83.05	102.54	36.54	78.76	117.42	114.98	84.92	68.92
Merged-chr17-71300081-3	chr17	71299971	71300171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10940.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	67.84	47.79	74.16	72.4	100.23	104.42	82.05	98.36	72.97	91.89	131.15	59.52
Merged-chr9-80165021-3	chr9	80164913	80165113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039546)	promoter-TSS (NM_001039546)	-21.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	80.36	72.69	78.72	61.94	108.0	124.49	67.1	101.1	175.64	188.79	226.12	114.66
Merged-chr5-73256788-3	chr5	73256673	73256873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-155.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	198.26	223.61	265.26	290.79	274.51	281.27	241.16	305.95	285.2	293.73	390.93	171.98
Merged-chr7-123322579-3	chr7	123322442	123322642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 4 of 19)	intron (NM_001316713, intron 4 of 19)	47373.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	80.36	67.41	91.84	109.0	126.41	120.73	91.68	137.52	146.53	113.98	214.06	104.0
Merged-chr14-55578442-3	chr14	55578299	55578499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-95.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	22.21	42.26	44.5	43.04	41.32	37.94	30.23	37.04	51.34	33.64	62.81	29.45
Merged-chr12-41196604-3	chr12	41196513	41196713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172523.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	17.36	16.85	30.23	28.15	24.14	31.04	19.6	29.3	30.49	32.13	26.13	21.3
Merged-chr10-88379160-3	chr10	88379101	88379301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004164)	promoter-TSS (NM_001004164)	-211.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	60.17	67.41	63.32	82.45	81.41	90.62	76.07	86.24	93.23	78.83	113.56	37.28
Merged-chr17-29093733-3	chr17	29093644	29093844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-25.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	51.69	58.1	41.07	44.64	58.5	37.63	28.9	35.22	43.27	38.16	54.27	26.63
Merged-chr19-29367385-3	chr19	29367302	29367502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021893)	promoter-TSS (NM_021893)	-36.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	55.32	53.83	34.23	26.55	59.73	51.43	32.55	39.5	83.2	68.79	76.88	45.11
Merged-chr16-36531301-3	chr16	36531211	36531411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30823.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	19.38	12.32	35.37	31.37	20.05	30.1	20.26	38.41	25.18	24.1	57.28	29.45
Merged-chr4-93511031-3	chr4	93510926	93511126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175515.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	33.52	19.87	35.94	34.59	36.0	24.46	18.6	37.85	51.73	40.17	74.87	21.3
Merged-chr13-107057252-3	chr13	107057155	107057355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34685.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	46.84	53.07	48.49	40.22	22.91	44.84	27.57	18.98	62.94	54.23	48.24	22.87
Merged-chr6-84020205-3	chr6	84020109	84020309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	823.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	14.54	16.6	14.26	26.55	21.68	13.48	23.92	24.42	28.52	28.62	26.13	11.9
Merged-chr1-184729436-3	chr1	184729328	184729528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3065.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	34.73	26.66	25.1	30.57	40.91	30.42	22.26	41.8	37.96	29.62	43.21	29.76
Merged-chr19-24961761-3	chr19	24961642	24961842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-126.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	232.59	232.16	202.51	170.13	220.92	254.93	158.78	150.08	342.63	332.39	367.82	172.61
Merged-chr10-81233173-3	chr10	81233075	81233275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034895)	promoter-TSS (NM_001034895)	12.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	50.47	58.35	54.76	41.43	63.41	63.97	28.9	43.12	76.31	64.27	62.31	33.83
Merged-chr11-63046574-3	chr11	63046461	63046661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15098.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	201.09	172.3	163.72	194.66	211.51	215.74	130.21	165.37	238.39	247.04	277.87	157.89
Merged-chr13-52602250-3	chr13	52602129	52602329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	5347.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	40.78	39.74	47.92	16.49	33.96	73.06	44.84	31.43	51.14	40.17	48.74	15.04
Merged-chr13-99344707-3	chr13	99344597	99344797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026873)	promoter-TSS (NM_026873)	-19.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	61.38	38.23	79.29	57.92	105.96	96.58	49.49	88.29	80.64	93.89	114.06	46.36
Merged-chr6-136553957-3	chr6	136553854	136554054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	35103.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	46.44	38.23	30.8	42.63	58.91	47.66	31.89	46.04	72.18	53.22	81.9	33.52
Merged-chr3-137953000-3	chr3	137952905	137953105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28544.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	21.0	8.8	22.25	23.33	19.23	13.17	13.29	16.35	34.42	31.13	34.67	16.29
Merged-chr8-126832737-3	chr8	126832638	126832838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16282.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	100.95	90.55	94.7	92.91	106.37	154.28	100.65	79.09	102.67	98.91	115.57	63.59
Merged-chr8-34108485-3	chr8	34108328	34108528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	284.0	NM_001293759	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	25.84	27.92	33.09	32.58	35.59	32.61	24.91	46.65	41.89	49.21	40.2	26.0
Merged-chr12-102456637-3	chr12	102456536	102456736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-12498.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	60.57	49.55	66.74	54.3	50.73	41.71	41.52	50.66	71.99	52.22	85.42	54.82
Merged-chr7-27231818-3	chr7	27231721	27231921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-1192.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	27.46	26.16	21.68	10.86	47.05	50.8	17.61	23.36	40.52	49.71	40.7	20.05
Merged-chr7-25221391-3	chr7	25221288	25221488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175436)	promoter-TSS (NM_175436)	-37.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	111.45	89.8	111.81	74.81	108.82	125.74	68.76	106.96	115.46	123.52	145.22	79.57
Merged-chr6-92943567-1	chr6	92943467	92943667	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	CpG	2985.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.21	3.52	1.14	6.03	35.59	31.98	47.5	52.09	0.39	0.0	0.0	0.63
Merged-chr9-102615288-1	chr9	102615188	102615388	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001301689, exon 6 of 15)	exon (NM_001301689, exon 6 of 15)	10836.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	4.04	2.52	1.14	3.22	5.73	5.64	6.64	3.7	23.01	18.58	25.63	23.49
Merged-chr10-96163504-3	chr10	96163390	96163590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62717.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	24.63	19.37	26.81	30.97	24.14	38.26	20.93	30.03	28.91	33.64	53.26	34.77
Merged-chr12-86894619-3	chr12	86894518	86894718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9804.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	191.8	175.57	222.48	218.39	195.96	225.46	160.11	174.62	257.66	236.49	276.37	183.57
Merged-chr8-36251670-3	chr8	36251583	36251783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2167.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	60.57	42.26	82.72	61.54	66.27	92.82	66.43	96.45	76.12	41.17	51.25	40.41
Merged-chr8-108886855-3	chr8	108886745	108886945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-50015.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	22.61	25.4	38.79	48.67	34.77	29.48	20.26	32.86	35.4	41.17	33.67	15.04
Merged-chr1-144003437-3	chr1	144003329	144003529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009061, intron 1 of 4)	intron (NM_009061, intron 1 of 4)	720.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	13.33	11.57	24.53	23.33	18.82	15.68	11.63	20.75	24.0	12.05	33.67	23.49
Merged-chr5-24451769-3	chr5	24451659	24451859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139153)	promoter-TSS (NM_139153)	-418.0	NM_001359881	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	120.33	116.46	158.02	145.19	154.64	185.95	131.21	161.97	178.2	187.29	217.57	124.05
Merged-chr19-29361885-3	chr19	29361789	29361989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-18.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	79.95	84.26	78.15	62.34	62.59	103.48	59.13	91.71	140.63	106.95	123.61	73.3
Merged-chr19-34570194-3	chr19	34570064	34570264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	-13365.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	68.65	85.77	51.91	57.92	59.32	51.74	44.18	55.09	84.38	72.3	78.39	47.93
Merged-chr1-172195345-1	chr1	172195245	172195445	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151641, exon 14 of 14)	non-coding (NR_151641, exon 14 of 14)	11459.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.44	0.5	2.85	1.61	0.82	0.0	1.0	2.05	15.93	4.02	25.12	12.22
Merged-chr2-119289279-3	chr2	119289183	119289383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	541.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	50.88	27.92	39.36	37.81	57.68	47.35	24.25	40.79	42.09	33.14	45.22	30.7
Merged-chr13-88821808-3	chr13	88821712	88821912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010103, exon 1 of 10)	5' UTR (NM_010103, exon 1 of 10)	340.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	29.88	17.36	55.33	50.27	13.91	11.92	27.9	19.26	44.06	31.13	63.31	18.17
Merged-chr7-141447656-3	chr7	141447558	141447758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	7.0	NM_001360658	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	40.78	39.49	37.08	43.84	58.91	68.36	33.55	47.38	76.12	58.75	60.8	38.22
Merged-chr3-129831428-3	chr3	129831335	129831535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026578)	promoter-TSS (NM_026578)	-39.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	86.82	92.81	60.47	106.58	105.96	108.18	79.72	94.4	139.85	141.09	150.74	92.41
Merged-chr17-34836594-1	chr17	34836494	34836694	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	309.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	14.54	14.09	11.98	11.26	15.14	18.5	19.27	5.75	13.57	24.1	21.61	10.02
Merged-chr2-32381985-3	chr2	32381880	32382080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-65.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	60.17	38.74	62.75	53.09	84.28	68.36	31.22	52.09	88.71	56.24	88.44	39.47
Merged-chr1-59763384-5	chr1	59763272	59763472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-907.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	13.73	10.06	15.97	9.65	20.86	11.29	13.29	12.7	37.17	41.17	60.3	22.24
Merged-chr18-80196339-3	chr18	80196241	80196441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199197, intron 3 of 5)	Charlie1a|DNA|hAT-Charlie	4278.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	125.58	104.64	146.61	127.1	117.0	144.24	98.99	165.28	149.48	177.24	204.01	116.54
Merged-chr4-87683034-3	chr4	87682932	87683132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	123291.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	74.3	64.14	88.42	107.39	64.64	58.64	81.38	87.76	70.81	55.73	60.8	44.48
Merged-chr11-69632786-3	chr11	69632695	69632895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-176.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	234.61	220.59	220.77	167.72	262.64	331.76	214.58	238.26	285.0	332.39	359.78	202.37
Merged-chr17-32284780-3	chr17	32284683	32284883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-650.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	30.69	29.18	30.8	29.76	31.09	25.71	20.26	16.71	36.19	40.67	50.25	23.18
Merged-chr2-167225138-3	chr2	167225034	167225234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 3 of 9)	MTC|LTR|ERVL-MaLR	15403.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	72.28	53.07	77.01	87.28	84.28	75.57	69.42	97.04	82.61	80.34	96.48	73.62
Merged-chr6-92988743-1	chr6	92988643	92988843	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48161.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	7.67	2.77	9.13	18.9	47.05	36.06	69.09	56.97	2.16	3.01	2.51	1.57
Merged-chr3-130900324-3	chr3	130900240	130900440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169942.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	65.41	66.91	115.23	142.78	33.96	46.72	51.15	81.93	58.42	23.6	73.36	59.21
Merged-chr11-40733545-3	chr11	40733430	40733630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	-93.0	NM_013552	15366.0	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	155.87	124.76	156.31	110.6	168.55	183.75	135.86	172.88	225.4	224.94	257.27	104.32
Merged-chr18-36709020-3	chr18	36708901	36709101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-13076.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	75.91	48.54	80.43	82.45	142.78	164.0	101.31	113.38	105.42	116.49	138.18	75.81
Merged-chr15-10486011-3	chr15	10485927	10486127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	9.0	NM_011232	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	69.45	74.2	110.1	82.85	94.5	145.18	83.37	109.6	136.5	122.51	185.92	72.36
Merged-chr4-40244288-3	chr4	40244171	40244371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57E2|LTR|ERV1	-4446.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	50.88	46.28	34.23	40.62	57.27	66.79	40.52	52.4	70.61	74.81	95.47	36.65
Merged-chr9-51008614-3	chr9	51008520	51008720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 1 of 15)	CpG	453.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	26.65	46.53	33.66	40.62	40.91	43.27	31.56	26.75	38.75	31.13	40.2	37.91
Merged-chr2-152294002-3	chr2	152293926	152294126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024196, exon 1 of 8)	exon (NM_024196, exon 1 of 8)	154.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	68.24	101.62	112.95	101.35	81.41	112.26	110.61	80.5	56.65	97.41	80.9	62.97
Merged-chr2-117019333-3	chr2	117019238	117019438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101733.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	35.53	29.68	43.35	42.63	48.27	65.85	36.87	64.77	64.71	45.69	78.89	34.15
Merged-chr1-153803720-3	chr1	153803600	153803800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40441.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	82.37	79.99	106.68	109.0	76.09	94.07	73.08	76.71	101.88	73.31	105.52	62.03
Merged-chr12-110608988-3	chr12	110608897	110609097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030238, intron 1 of 76)	intron (NM_030238, intron 1 of 76)	7602.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	35.94	15.34	14.83	14.48	36.82	27.91	20.59	27.95	31.08	23.6	54.27	23.81
Merged-chr11-86671260-3	chr11	86671169	86671369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	6.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	49.67	34.21	57.05	49.87	54.0	48.6	44.18	49.68	62.55	47.2	80.4	40.72
Merged-chr10-85183863-3	chr10	85183778	85183978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	1176.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	19.79	25.15	18.83	20.11	32.73	23.2	22.26	17.36	31.86	27.62	36.68	25.69
Merged-chr7-105752211-3	chr7	105752117	105752317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009906)	promoter-TSS (NM_009906)	18.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	28.27	27.42	41.64	32.98	40.91	52.05	21.92	41.58	66.87	48.7	55.78	33.83
Merged-chr3-108900377-3	chr3	108900267	108900467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10359.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	49.26	30.69	52.48	53.89	48.27	59.58	43.85	54.73	57.24	39.67	65.32	33.52
Merged-chr2-22895428-3	chr2	22895328	22895528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019501)	promoter-TSS (NM_019501)	-94.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	78.74	79.48	73.02	84.46	106.78	91.25	84.37	69.14	125.68	107.45	162.3	100.56
Merged-chr15-89128649-3	chr15	89128558	89128758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028449)	promoter-TSS (NR_028449)	42.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	53.3	29.93	30.8	37.0	49.5	45.47	19.6	42.95	45.04	53.73	47.74	41.35
Merged-chr6-81923700-3	chr6	81923610	81923810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177884)	promoter-TSS (NM_177884)	41.0	NM_177884	330361.0	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	23.42	37.98	45.64	40.62	30.68	49.54	37.2	46.04	36.98	44.69	27.64	26.63
Merged-chr2-18065343-5	chr2	18065234	18065434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010804, intron 2 of 22)	CpG-7762	749.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	17.36	19.37	9.7	8.85	14.73	26.97	12.62	13.77	39.34	38.16	59.8	26.0
Merged-chr5-88564904-3	chr5	88564811	88565011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-129.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	81.97	66.91	54.76	65.16	100.64	108.5	75.07	90.31	107.79	104.44	121.6	56.7
Merged-chr5-92137816-3	chr5	92137711	92137911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019490)	promoter-TSS (NM_019490)	-86.0	NM_001359195	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	176.05	194.18	173.42	177.77	228.28	244.9	196.98	248.02	252.35	253.56	296.97	125.62
Merged-chr2-154656933-3	chr2	154656850	154657050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029362)	promoter-TSS (NM_029362)	-76.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	139.31	146.14	132.92	129.91	158.32	209.78	144.49	146.58	209.47	196.83	258.78	110.9
Merged-chr10-20770675-3	chr10	20770569	20770769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-E-int|LTR|ERVL	-45591.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	43.61	25.15	33.09	37.0	48.27	35.75	32.22	49.32	66.68	45.19	62.31	29.45
Merged-chr5-105053819-5	chr5	105053714	105053914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029509)	promoter-TSS (NM_029509)	-253.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	11.31	18.11	13.12	4.02	8.59	5.96	8.3	5.38	33.04	26.61	24.12	17.86
Merged-chr16-57389827-3	chr16	57389731	57389931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36554.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	23.42	19.12	42.21	39.82	45.41	52.68	51.15	61.4	47.8	48.2	56.28	36.03
Merged-chr11-50026941-3	chr11	50026848	50027048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	1617.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	40.78	24.65	46.21	25.34	52.37	63.66	45.51	54.08	46.03	33.14	54.77	17.86
Merged-chr4-55351272-1	chr4	55351172	55351372	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	1230.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	6.06	7.55	4.56	1.21	2.86	15.68	3.65	3.62	15.14	10.04	6.03	8.46
Merged-chr12-91719289-3	chr12	91719197	91719397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	MTD|LTR|ERVL-MaLR	67139.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	148.6	118.22	203.65	182.2	160.78	166.19	209.93	228.79	193.34	125.53	195.97	127.81
Merged-chr6-114894005-3	chr6	114893910	114894110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27811.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	105.39	99.1	86.14	121.87	132.96	144.56	95.33	104.3	126.47	119.0	165.82	73.93
Merged-chr3-97951305-3	chr3	97951182	97951382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	L1_Mur3|LINE|L1	21109.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	51.28	50.81	58.76	49.87	47.87	77.45	48.5	60.0	59.4	52.22	63.82	43.54
Merged-chr7-99043534-3	chr7	99043442	99043642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	97602.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	52.49	44.52	41.64	71.99	67.91	77.14	36.21	72.36	66.48	55.73	84.42	41.35
Merged-chr5-139404040-3	chr5	139403954	139404154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-2333.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	31.5	27.42	73.02	57.51	41.73	77.14	90.02	103.18	37.76	30.63	56.28	40.72
Merged-chr14-20733673-3	chr14	20733572	20733772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010811, intron 1 of 14)	intron (NM_010811, intron 1 of 14)	890.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	21.0	28.42	43.93	24.94	39.27	34.81	47.5	61.4	67.86	48.2	73.36	30.39
Merged-chr4-155624812-3	chr4	155624735	155624935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040441)	promoter-TSS (NR_040441)	-19.0	NM_001347308	12537.0	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	172.82	158.46	124.93	145.19	151.37	219.19	124.23	121.6	214.78	264.11	233.15	152.56
Merged-chr11-79140353-3	chr11	79140254	79140454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	6119.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	35.13	30.69	50.2	59.93	47.05	40.14	26.57	45.53	29.9	19.08	38.19	36.34
Merged-chr1-134518783-3	chr1	134518695	134518895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24135.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	40.78	39.99	32.52	34.99	29.46	37.94	31.89	42.45	39.34	49.21	85.42	39.47
Merged-chr17-5569292-3	chr17	5569192	5569392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	76692.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	86.01	37.73	84.43	108.59	108.0	97.21	91.68	134.8	120.57	103.94	142.2	72.99
Merged-chr12-38779509-3	chr12	38779395	38779595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-587.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	60.17	55.84	55.9	58.72	52.77	68.36	47.17	47.3	70.61	54.73	93.96	32.89
Merged-chr11-5522161-3	chr11	5522007	5522207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013842, intron 2 of 4)	intron (NM_013842, intron 2 of 4)	1466.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	17.77	17.61	18.25	15.69	17.18	35.43	13.95	19.99	26.16	23.1	27.64	14.1
Merged-chr2-103970111-3	chr2	103970029	103970229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-158.0	NM_008505	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	60.57	61.12	57.05	75.21	70.77	64.6	43.85	67.07	66.28	80.84	65.32	47.3
Merged-chr8-11636468-3	chr8	11636356	11636556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-699.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	55.32	48.04	54.19	72.8	75.28	66.16	53.81	78.98	93.43	74.81	107.53	47.93
Merged-chr16-4722319-3	chr16	4722213	4722413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2957.0	NM_001290761	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	41.99	30.18	52.48	48.26	34.36	31.67	30.89	52.43	40.32	32.13	40.7	33.83
Merged-chr11-95834525-3	chr11	95834416	95834616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7779.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	62.59	39.99	83.86	68.78	91.23	70.55	69.09	90.93	90.48	58.75	101.0	63.59
Merged-chr8-35716680-1	chr8	35716580	35716780	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109879.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.4	0.0	0.0	0.0	0.0	0.0	0.66	0.36	61.37	55.73	55.27	21.3
Merged-chr2-34772235-6	chr2	34772112	34772312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022310, exon 1 of 8)	5' UTR (NM_022310, exon 1 of 8)	122.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	151.83	191.92	65.6	62.74	87.14	244.9	66.77	55.88	219.9	278.67	177.38	88.97
Merged-chrX-159255295-3	chrX	159255188	159255388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148945)	promoter-TSS (NM_148945)	-494.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	21.0	30.69	19.4	28.96	38.86	33.24	23.25	29.33	35.8	28.62	46.73	15.98
Merged-chr8-13106122-1	chr8	13106022	13106222	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178708)	promoter-TSS (NM_178708)	401.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	13.73	13.58	15.4	16.49	22.09	16.93	35.54	12.76	20.06	17.07	24.62	19.11
Merged-chr1-131658189-3	chr1	131658103	131658303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	19889.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	78.74	91.05	88.99	69.18	89.59	103.79	60.12	93.42	66.09	67.78	75.87	46.05
Merged-chr6-136658168-3	chr6	136658087	136658287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	3706.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	60.97	49.3	61.04	37.0	35.18	59.58	22.59	34.09	36.98	40.67	42.21	32.89
Merged-chr12-69683784-3	chr12	69683671	69683871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1919.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	20.19	15.85	26.24	20.11	36.41	31.04	15.28	42.36	30.29	25.61	34.17	19.74
Merged-chr4-141766584-3	chr4	141766495	141766695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172338, intron 12 of 14)	intron (NM_172338, intron 12 of 14)	19920.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	69.45	52.32	70.17	76.42	40.09	48.29	31.22	53.69	43.27	43.18	47.74	32.58
Merged-chr4-135876797-3	chr4	135876683	135876883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2937.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	128.81	125.76	131.21	114.63	173.46	170.9	99.98	108.25	158.92	157.66	176.37	89.91
Merged-chr5-92441671-3	chr5	92441570	92441770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-6471.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	111.45	97.34	124.36	82.45	144.0	137.97	95.0	133.49	147.52	151.64	207.53	98.68
Merged-chr2-73526890-3	chr2	73526780	73526980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2607.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	28.67	24.4	41.64	24.13	44.59	40.14	32.22	51.11	40.71	38.66	40.7	24.12
Merged-chr8-105607994-3	chr8	105607872	105608072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	2743.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	13.33	22.39	25.67	28.56	20.86	21.95	12.62	12.84	17.7	16.57	24.62	19.74
Merged-chr12-84996289-3	chr12	84996201	84996401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-20.0	NM_001347421	56531.0	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	41.99	44.52	41.64	44.64	51.96	59.58	22.92	43.51	55.47	45.19	68.34	32.89
Merged-chr3-27194122-3	chr3	27194002	27194202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	L3|LINE|CR1	11098.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	67.84	52.57	65.6	77.62	48.68	66.48	61.12	78.0	106.21	88.87	105.52	89.59
Merged-chr19-8518444-3	chr19	8518344	8518544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-72810.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	102.16	98.6	124.36	140.77	104.73	97.83	67.1	87.25	102.67	89.37	109.04	70.48
Merged-chr3-107084709-3	chr3	107084603	107084803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16864.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	21.4	19.37	23.39	20.91	16.77	36.69	14.95	21.17	39.73	38.66	43.21	28.82
Merged-chr4-43982560-3	chr4	43982441	43982641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002787)	promoter-TSS (NM_001002787)	-963.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	48.05	64.39	50.77	61.54	69.14	59.58	31.89	37.01	74.74	57.74	89.94	36.03
Merged-chr18-60752197-3	chr18	60752114	60752314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3549.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	31.09	17.86	54.76	39.42	45.41	53.31	54.81	107.19	36.78	29.62	58.29	36.03
Merged-chr7-102250738-3	chr7	102250621	102250821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-603.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	197.46	252.53	216.2	180.59	264.28	330.19	253.78	206.58	302.51	324.36	346.21	151.31
Merged-chr11-120518281-3	chr11	120518194	120518394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12433.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	73.09	62.88	55.9	39.82	91.64	116.02	54.81	58.32	105.03	104.94	103.01	33.52
Merged-chr17-24528064-3	chr17	24527963	24528163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-125.0	NM_001172114	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	274.58	248.51	269.26	239.71	247.92	293.5	242.48	267.39	311.95	296.74	330.63	170.1
Merged-chr10-98815032-3	chr10	98814912	98815112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99630.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	33.11	31.19	25.67	34.59	39.27	34.81	23.92	25.32	45.24	52.72	43.72	36.03
Merged-chr10-128529067-4	chr10	128528984	128529184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3225.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	12.92	9.81	17.68	10.46	16.77	20.38	14.28	13.77	21.05	20.08	14.07	15.35
Merged-chr11-70970084-3	chr11	70969979	70970179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	-106.0	NM_001276406	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	136.08	140.6	144.33	147.61	153.41	174.97	116.92	124.65	169.94	158.67	221.09	121.55
Merged-chr11-50325717-3	chr11	50325573	50325773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	0.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	192.61	190.41	144.9	129.11	160.78	214.8	111.28	114.2	226.19	236.99	241.19	126.56
Merged-chr4-36038966-3	chr4	36038864	36039064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193760.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	21.4	17.61	25.1	38.61	86.73	59.27	84.7	118.49	58.22	72.81	63.82	37.28
Merged-chr2-167926247-3	chr2	167926156	167926356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-6071.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	38.76	50.81	55.9	71.19	56.05	63.97	66.77	68.47	55.27	54.73	74.37	57.01
Merged-chr7-16046180-3	chr7	16046059	16046259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25686.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	33.11	44.27	28.52	22.93	38.05	31.98	25.91	38.83	42.09	27.11	53.26	20.68
Merged-chr12-79140984-3	chr12	79140876	79141076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	10188.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	78.74	61.62	62.75	77.22	120.69	159.92	93.01	122.36	106.8	124.02	109.54	75.5
Merged-chr2-127208269-3	chr2	127208117	127208317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	63.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	28.27	30.69	30.8	22.12	37.64	47.35	32.88	18.56	66.87	64.77	69.85	35.4
Merged-chr18-67724556-3	chr18	67724388	67724588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001127177, exon 1 of 9)	exon (NM_001127177, exon 1 of 9)	133.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	95.7	122.24	110.1	124.28	102.68	124.8	129.21	99.34	154.79	175.74	161.3	124.37
Merged-chr19-6128207-3	chr19	6128130	6128330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026912)	promoter-TSS (NM_026912)	-15.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	54.92	52.82	59.9	46.66	54.82	71.18	34.88	44.5	79.46	75.82	67.33	35.71
Merged-chr3-127768192-1	chr3	127768092	127768292	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	12335.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.46	14.09	5.7	2.82	17.18	24.77	20.59	11.92	10.23	6.03	5.02	1.88
Merged-chr11-79305839-3	chr11	79305728	79305928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34064.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	47.65	46.53	44.5	39.01	54.0	62.71	34.55	47.72	69.23	75.32	45.73	42.6
Merged-chr5-72270160-1	chr5	72270060	72270260	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66817.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	1.62	7.04	2.28	2.82	9.82	3.45	4.98	10.32	9.05	6.53	6.03	10.65
Merged-chr18-49979361-3	chr18	49979273	49979473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-54.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	136.08	133.31	156.88	147.61	208.23	202.88	111.94	166.46	228.94	194.82	274.36	125.31
Merged-chr6-126940694-3	chr6	126940594	126940794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	728.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	155.87	159.97	151.74	171.74	126.0	149.26	123.57	168.03	155.58	148.12	175.87	104.32
Merged-chr16-32130352-3	chr16	32130273	32130473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30571.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	58.95	64.64	54.19	45.85	52.37	84.35	42.19	48.73	65.89	46.7	55.27	36.65
Merged-chr14-120279086-3	chr14	120278976	120279176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	3407.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	34.73	20.37	29.09	20.11	44.18	39.51	40.19	51.2	42.09	46.7	37.69	31.33
Merged-chr1-10039751-3	chr1	10039634	10039834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026493, intron 1 of 29)	GC_rich|Low_complexity|Low_complexity	1516.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	75.51	79.48	77.01	53.89	93.28	83.1	62.12	76.77	103.26	104.94	144.21	67.35
Merged-chr9-109074158-3	chr9	109074032	109074232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172774)	promoter-TSS (NM_172774)	-8.0	NM_172774	235610.0	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	35.94	29.43	39.36	29.76	53.18	52.68	23.58	37.79	75.92	64.77	60.3	56.39
Merged-chr2-154570011-3	chr2	154569905	154570105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291105)	promoter-TSS (NM_001291105)	-113.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	156.67	128.53	160.87	119.05	124.37	177.8	107.29	137.72	194.33	148.12	240.69	109.96
Merged-chr4-136143771-3	chr4	136143675	136143875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-47.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	250.76	228.14	234.46	248.96	232.37	272.49	218.57	193.51	254.71	271.64	370.33	186.71
Merged-chr4-8647401-5	chr4	8647298	8647498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-43008.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	121.54	150.92	128.35	94.92	111.69	140.48	180.04	105.87	122.93	156.66	135.17	89.91
Merged-chr6-71981578-3	chr6	71981460	71981660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60968.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	53.7	38.99	38.22	44.24	59.73	80.27	35.87	58.96	50.35	72.81	76.38	31.01
Merged-chr7-43919991-3	chr7	43919913	43920113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13758.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	41.59	30.18	38.79	24.94	65.05	53.93	32.22	61.65	63.33	53.22	84.42	35.4
Merged-chr18-5688636-3	chr18	5688471	5688671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	MTD|LTR|ERVL-MaLR	95924.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	46.84	54.33	74.16	72.8	53.18	69.3	61.12	74.64	51.34	41.17	49.24	41.04
Merged-chr3-15850087-1	chr3	15849987	15850187	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1600.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	1.62	3.77	2.85	4.02	5.73	10.03	7.97	0.06	32.06	30.63	48.74	20.36
Merged-chr14-51083432-3	chr14	51083309	51083509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7668.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	39.17	34.71	33.66	9.65	37.64	51.74	17.27	27.98	59.2	50.71	38.69	29.45
Merged-chr1-43913420-3	chr1	43913322	43913522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20572.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	23.42	16.6	18.25	18.1	30.27	42.02	26.91	33.76	28.91	19.08	32.16	18.48
Merged-chr5-113643697-3	chr5	113643595	113643795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359060)	promoter-TSS (NM_001359060)	-92.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	23.02	29.93	27.38	14.88	40.5	61.15	33.22	32.27	71.0	61.76	47.74	25.06
Merged-chr17-29998572-3	chr17	29998451	29998651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6488.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	35.53	38.48	36.51	28.15	23.32	58.64	25.91	21.87	66.68	49.71	48.74	43.54
Merged-chr2-144247507-3	chr2	144247404	144247604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18698.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	59.36	37.98	65.03	50.27	54.82	56.13	41.85	81.48	41.11	43.18	72.86	36.65
Merged-chr16-33056445-3	chr16	33056368	33056568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	-14.0	NM_001130484	57808.0	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	26.65	12.07	20.54	20.51	22.09	27.28	9.63	14.55	41.89	38.16	20.1	27.88
Merged-chr16-8672209-3	chr16	8672096	8672296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-43.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	33.92	33.45	53.05	41.43	68.32	84.04	47.17	63.98	80.45	78.33	134.16	48.24
Merged-chr12-80054503-3	chr12	80054413	80054613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58500.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	38.36	36.22	40.5	34.59	71.59	98.15	66.77	67.4	56.45	65.27	59.29	23.81
Merged-chr17-23700253-3	chr17	23700155	23700355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16229.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	44.82	36.97	41.64	46.66	49.91	48.92	32.22	39.73	36.78	32.13	56.78	25.06
Merged-chr2-166412636-3	chr2	166412536	166412736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34815.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	9.29	33.96	19.97	25.34	20.05	41.08	30.23	36.98	37.37	31.63	34.67	21.62
Merged-chr3-135438238-3	chr3	135438156	135438356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025356)	promoter-TSS (NM_025356)	24.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	216.43	225.87	208.79	201.1	237.28	288.8	190.67	168.65	324.73	369.55	344.7	182.63
Merged-chr15-86189274-3	chr15	86189163	86189363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3122.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	22.21	9.81	43.35	28.96	28.23	19.13	19.27	45.59	21.83	19.08	34.17	17.86
Merged-chr6-87535804-3	chr6	87535720	87535920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2561.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	31.09	23.64	35.37	27.75	38.46	32.93	51.49	36.03	26.16	21.59	51.25	19.42
Merged-chr16-13437267-3	chr16	13437174	13437374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12249.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	110.64	154.94	120.94	140.77	138.28	152.71	112.27	135.42	116.05	114.48	153.76	66.73
Merged-chr15-38710371-3	chr15	38710290	38710490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18126.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	86.82	60.37	126.64	88.48	137.46	123.23	140.18	204.39	105.03	115.48	232.65	82.7
Merged-chr7-105737402-3	chr7	105737305	105737505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	-20.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	29.07	24.15	18.25	20.91	20.86	40.14	22.92	32.38	54.29	38.16	36.18	25.37
Merged-chr4-22402273-1	chr4	22402173	22402373	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172988, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	44730.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	2.83	1.01	4.56	6.84	6.55	3.14	1.99	7.85	10.42	6.53	18.09	11.28
Merged-chr18-5348986-3	chr18	5348900	5349100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14193.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	19.38	19.62	20.54	16.49	29.86	30.42	16.61	22.63	26.36	37.16	26.63	26.31
Merged-chr5-34535194-3	chr5	34535147	34535347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-8118.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	53.3	52.57	68.45	39.01	56.05	77.77	46.84	40.79	52.91	62.76	54.27	32.89
Merged-chr10-17772654-3	chr10	17772563	17772763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23556.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	27.86	42.26	35.37	39.42	47.05	65.54	45.18	40.77	111.72	99.92	114.57	59.21
Merged-chr16-57166812-2	chr16	57166719	57166919	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	513.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	7.27	12.07	13.69	12.07	11.05	23.2	15.61	18.56	25.96	23.1	31.66	13.16
Merged-chr17-35232234-3	chr17	35232117	35232317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2793.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	23.42	20.37	29.09	24.53	27.0	41.71	13.95	17.72	20.65	24.6	22.11	17.54
Merged-chr11-17257583-3	chr11	17257441	17257641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	-6.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	46.03	66.15	59.33	41.43	59.73	63.66	42.85	56.19	81.82	55.73	70.85	35.4
Merged-chr1-172456145-3	chr1	172456048	172456248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19212.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	71.47	45.53	58.76	69.58	57.27	77.77	69.09	74.55	80.05	77.83	109.04	49.5
Merged-chr2-26445935-3	chr2	26445820	26446020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-4.0	NR_152209	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	61.38	40.5	49.06	46.66	52.77	68.36	41.85	44.78	83.4	83.85	97.48	52.0
Merged-chr16-37580084-3	chr16	37579989	37580189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-64.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	16.15	17.61	24.53	17.29	21.68	22.26	18.27	21.25	30.29	20.59	26.63	13.47
Merged-chr11-84818841-3	chr11	84818731	84818931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145433, intron 1 of 4)	CpG	684.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	36.75	41.0	39.93	41.83	50.73	52.37	37.2	38.69	61.37	50.71	46.73	43.86
Merged-chr13-20784484-3	chr13	20784381	20784581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9632.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	77.12	89.54	84.43	74.41	74.46	101.28	53.48	67.4	83.59	66.28	75.37	53.57
Merged-chr4-88865364-3	chr4	88865263	88865463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14838.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	47.24	35.97	81.0	44.24	45.82	43.27	27.9	53.27	78.68	56.74	50.75	24.75
Merged-chr11-76588238-3	chr11	76588127	76588327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10488.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	106.2	105.89	98.69	96.13	115.37	161.49	88.69	101.69	116.64	131.05	137.18	68.29
Merged-chr14-45049851-3	chr14	45049716	45049916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61705.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	56.13	39.74	54.19	57.51	62.18	68.67	58.46	72.53	62.15	49.71	52.76	30.7
Merged-chr10-118141737-3	chr10	118141632	118141832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-55.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	314.15	306.11	288.65	306.07	297.83	361.86	275.04	343.54	343.81	352.98	437.66	219.6
Merged-chrX-20392148-3	chrX	20392029	20392229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290643, intron 3 of 5)	intron (NM_001290643, intron 3 of 5)	27648.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	28.67	17.86	58.76	43.84	44.59	36.37	52.15	46.79	27.14	25.11	32.66	21.93
Merged-chr2-125866246-3	chr2	125866165	125866365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291002)	promoter-TSS (NM_001291002)	42.0	NM_001291002	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	26.65	38.99	30.23	32.58	54.41	42.65	17.94	40.88	44.25	22.09	27.13	29.76
Merged-chr10-99268930-3	chr10	99268836	99269036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5705.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	128.81	177.58	201.94	196.68	146.05	177.8	167.08	187.77	139.26	158.16	182.4	115.6
Merged-chr7-133047475-3	chr7	133047384	133047584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32237.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	20.59	14.34	43.35	24.13	25.77	27.91	24.91	37.68	37.37	31.13	81.4	21.62
Merged-chr4-123612146-3	chr4	123612047	123612247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-4273.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	31.9	18.11	22.82	31.77	19.64	28.85	26.24	30.98	31.67	36.65	35.68	19.74
Merged-chr11-55469456-3	chr11	55469382	55469582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-270.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	288.71	318.69	334.86	339.05	323.19	438.06	303.6	313.09	419.93	504.11	517.05	288.83
Merged-chr4-115737702-3	chr4	115737609	115737809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172698)	promoter-TSS (NM_172698)	-364.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	209.17	201.22	265.83	210.75	191.87	251.49	186.35	235.99	280.28	274.15	382.89	190.15
Merged-chr3-79197213-3	chr3	79197109	79197309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15710.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	106.2	87.53	150.6	111.41	122.73	131.7	120.25	145.88	133.55	129.54	189.94	89.28
Merged-chr17-56269346-3	chr17	56269248	56269448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_174989)	TTS (NM_174989)	7419.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	83.18	63.89	69.03	68.78	91.23	86.55	36.54	86.58	119.0	131.55	92.46	71.42
Merged-chr3-59210930-3	chr3	59210809	59211009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-27.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	51.28	52.57	32.52	41.83	26.59	50.49	29.56	37.12	32.85	42.68	39.19	15.66
Merged-chr4-63745286-3	chr4	63745183	63745383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177371)	promoter-TSS (NM_177371)	-170.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	48.46	34.21	56.48	28.15	44.59	54.88	35.87	34.88	55.47	45.69	47.74	23.18
Merged-chr4-149173841-3	chr4	149173729	149173929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7124.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	32.3	26.16	59.9	37.81	56.46	74.32	51.82	85.51	52.71	62.76	90.95	50.75
Merged-chr11-45852660-3	chr11	45852550	45852750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	686.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	25.84	21.63	23.39	23.33	33.14	30.73	27.57	18.7	27.14	27.11	38.69	24.43
Merged-chr16-4939073-3	chr16	4938978	4939178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025839)	promoter-TSS (NM_025839)	-33.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	38.36	37.48	38.22	25.34	51.55	66.16	37.54	38.55	58.61	55.73	71.86	30.7
Merged-chr4-35225204-3	chr4	35225098	35225298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	682.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	102.97	94.32	112.95	93.71	102.28	116.34	116.59	142.37	137.48	130.05	178.38	90.22
Merged-chr16-87636018-3	chr16	87635929	87636129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62925.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	16.56	19.37	35.94	24.53	43.77	44.53	36.54	45.28	36.98	26.61	26.63	13.16
Merged-chr2-157367698-3	chr2	157367597	157367797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	CpG	103.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	49.26	45.02	55.9	42.23	31.09	49.86	43.18	30.87	35.6	41.67	39.7	25.69
Merged-chr5-113771699-4	chr5	113771629	113771829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151532, exon 1 of 17)	non-coding (NR_151532, exon 1 of 17)	671.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	19.38	15.09	12.55	19.31	33.55	20.07	15.94	14.19	28.52	19.08	14.07	17.23
Merged-chr19-5795210-3	chr19	5795118	5795318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002847)	TTS (NR_002847)	763.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	33.52	43.51	33.66	32.58	26.59	52.68	16.61	15.62	32.06	45.69	30.65	16.29
Merged-chr12-9031005-3	chr12	9030908	9031108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029321, intron 1 of 2)	intron (NM_029321, intron 1 of 2)	1011.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	30.69	21.88	28.52	34.59	27.0	26.03	33.88	38.55	34.62	25.11	57.79	23.18
Merged-chr13-12256052-3	chr13	12255966	12256166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	2047.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	74.7	61.37	96.41	87.68	60.55	66.48	75.07	96.0	82.41	71.8	132.15	62.65
Merged-chr3-108722243-3	chr3	108722124	108722324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029522)	promoter-TSS (NM_029522)	75.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	52.9	54.83	52.48	57.11	59.73	70.24	69.09	63.0	60.78	64.77	80.9	38.53
Merged-chr5-115530080-3	chr5	115529926	115530126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23350.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	31.5	31.69	30.23	42.23	29.05	35.43	45.51	38.07	33.24	37.66	43.72	20.68
Merged-chr5-105723572-2	chr5	105723475	105723675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	22765.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	28.27	28.67	56.48	38.21	38.05	45.47	12.95	28.82	0.39	0.5	1.0	0.31
Merged-chr6-94507303-3	chr6	94507193	94507393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6979.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	48.86	44.27	29.66	51.48	45.82	73.69	32.22	39.28	34.42	24.6	23.62	23.18
Merged-chr7-80860901-3	chr7	80860818	80861018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1190.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	71.88	72.94	98.69	84.46	116.19	101.28	61.45	94.63	114.47	114.98	115.07	68.29
Merged-chr7-3629863-3	chr7	3629686	3629886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027328)	promoter-TSS (NM_027328)	143.0	NM_023524	69714.0	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	11.31	18.36	10.84	18.5	15.96	15.05	23.25	8.69	30.88	35.15	18.59	16.92
Merged-chr11-60104960-3	chr11	60104865	60105065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009021)	promoter-TSS (NM_009021)	-48.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	22.21	25.4	15.97	14.08	20.86	21.64	11.29	16.74	25.18	24.1	26.63	21.62
Merged-chr17-28313422-3	chr17	28313274	28313474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163820)	promoter-TSS (NM_001163820)	-156.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	91.66	88.79	89.56	113.42	132.14	148.32	86.36	103.63	150.86	124.02	191.95	93.98
Merged-chr9-99499583-3	chr9	99499485	99499685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 15 of 21)	intron (NM_028768, intron 15 of 21)	29164.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	27.46	30.43	45.64	25.74	35.59	49.54	36.54	39.31	38.75	35.65	58.29	25.69
Merged-chr4-149104147-3	chr4	149104052	149104252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	10.0	NM_001025296	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	67.84	49.05	43.93	34.19	60.96	80.9	29.23	31.21	49.17	31.63	57.28	24.75
Merged-chr7-63999839-3	chr7	63999736	63999936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60921.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	31.9	35.72	41.64	28.96	47.87	44.21	37.2	58.91	82.02	75.32	87.43	37.28
Merged-chr11-70654642-3	chr11	70654544	70654744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	6.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	35.13	26.16	31.95	20.51	24.96	33.55	9.63	13.91	47.99	47.7	36.68	34.77
Merged-chr11-19019006-3	chr11	19018914	19019114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-45.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	65.01	63.89	87.28	78.83	99.82	84.04	49.49	75.08	124.5	70.8	127.13	56.39
Merged-chr11-96830061-3	chr11	96829954	96830154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-86.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	186.96	167.27	172.28	201.1	207.42	223.89	148.15	161.13	226.39	196.32	242.2	136.58
Merged-chr10-125725596-3	chr10	125725493	125725693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-240626.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	36.75	45.28	53.62	54.7	43.36	44.21	53.81	75.9	48.58	43.18	72.36	22.87
Merged-chr7-118798355-3	chr7	118798239	118798439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 19 of 30)	RSINE1|SINE|B4	57274.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	31.5	37.73	37.65	28.96	35.59	42.96	40.19	25.6	38.55	33.64	27.64	29.13
Merged-chr2-153084398-3	chr2	153084304	153084504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18449.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	129.21	133.06	191.67	146.0	158.73	233.93	166.09	193.49	205.74	178.25	271.84	129.38
Merged-chr5-76304889-3	chr5	76304766	76304966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289826)	promoter-TSS (NM_001289826)	-10.0	NR_152171	665055.0	Mm.425276	NR_152171	ENSMUSG00000098449	Gm7467	EG665055	predicted gene 7467	ncRNA	70.26	95.58	47.35	82.85	82.23	185.32	105.63	83.66	109.56	141.59	109.54	46.36
Merged-chr7-97082449-3	chr7	97082340	97082540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	689.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	13.33	16.6	27.38	17.29	17.59	20.7	17.94	31.74	29.5	30.13	37.18	26.0
Merged-chr4-116626861-3	chr4	116626752	116626952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081475, intron 1 of 13)	CpG	645.0	NM_001081475	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	46.84	37.98	25.67	20.51	32.73	48.29	22.26	26.1	46.62	54.23	54.27	28.19
Merged-chr5-91962908-3	chr5	91962815	91963015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	33.0	NR_028429	381650.0	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	82.37	94.57	98.69	103.37	68.73	110.06	96.66	72.76	117.03	116.99	150.74	86.46
Merged-chr8-121829575-3	chr8	121829443	121829643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	26.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	35.13	23.39	39.93	28.96	42.96	41.39	14.62	35.83	47.99	44.19	48.24	20.68
Merged-chr7-30090500-3	chr7	30090393	30090593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	17.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	124.37	93.32	118.08	119.86	163.64	130.45	91.01	127.37	191.77	177.75	209.54	104.94
Merged-chr14-31669990-3	chr14	31669908	31670108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28951.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	33.52	41.75	45.07	34.59	33.55	42.65	36.21	34.85	45.83	40.67	39.19	19.74
Merged-chr8-13674476-3	chr8	13674380	13674580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3107.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	61.78	35.72	55.33	51.48	45.41	63.66	54.81	74.78	47.01	50.71	85.42	38.85
Merged-chr5-130024379-3	chr5	130024283	130024483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-2.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	65.82	57.85	52.48	48.67	95.32	106.93	52.48	68.75	99.33	122.01	114.06	59.83
Merged-chr3-20004721-3	chr3	20004624	20004824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 14 of 16)	intron (NM_080634, intron 14 of 16)	30586.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	43.61	36.22	79.29	94.11	70.37	68.36	73.08	113.83	69.43	50.71	75.87	62.97
Merged-chr2-165928024-3	chr2	165927931	165928131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-43193.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	29.07	25.15	26.24	28.56	32.32	26.97	40.19	43.35	23.01	21.09	31.15	20.36
Merged-chr2-32496342-3	chr2	32496242	32496442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39017.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	46.03	28.42	57.62	58.72	49.5	49.23	61.45	89.64	59.99	46.19	91.45	46.05
Merged-chr7-121983236-3	chr7	121983155	121983355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-1562.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	35.13	17.1	26.81	29.36	24.96	19.13	25.58	30.48	29.11	25.11	32.16	37.91
Merged-chr7-141009156-3	chr7	141009055	141009255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025378)	TTS (NM_025378)	1589.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	42.8	43.77	27.95	25.34	47.05	48.92	20.26	32.97	49.76	50.21	48.74	38.22
Merged-chr5-121500950-3	chr5	121500844	121501044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	2036.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	34.32	22.89	28.52	22.52	32.32	43.59	21.26	25.01	21.44	31.63	40.7	18.17
Merged-chr7-97749057-3	chr7	97748949	97749149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-10802.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	40.78	33.7	54.19	35.8	33.96	21.32	13.29	24.79	46.03	33.14	38.69	34.15
Merged-chr2-48814033-4	chr2	48813916	48814116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007396)	promoter-TSS (NM_007396)	-93.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	44.82	20.88	22.82	29.76	38.46	49.54	27.24	34.6	53.7	64.27	75.37	29.13
Merged-chr13-35740786-3	chr13	35740693	35740893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-609.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	33.52	17.36	31.38	11.26	25.77	31.36	22.59	25.71	23.41	19.58	25.63	14.72
Merged-chrUn_JH584304-4600-1	chrUn_JH584304	4500	4700	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55089.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	16.72	19.58	20.6	13.47
Merged-chr4-66827616-3	chr4	66827515	66827715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021297)	promoter-TSS (NM_021297)	64.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	188.57	181.1	205.36	287.17	237.69	216.37	186.02	242.8	213.41	217.91	269.83	143.79
Merged-chr1-24678612-3	chr1	24678522	24678722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310483)	promoter-TSS (NM_001310483)	78.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	165.15	152.17	172.85	152.03	211.1	240.2	164.42	214.07	241.93	225.95	333.65	141.6
Merged-chr11-94210282-3	chr11	94210174	94210374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1180.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	60.17	63.13	77.58	76.02	100.64	105.99	62.45	87.81	70.02	71.3	83.91	46.36
Merged-chr18-5802494-3	chr18	5802397	5802597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	209850.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	43.21	41.25	23.96	38.21	52.77	91.56	72.75	43.54	50.75	46.19	43.72	25.06
Merged-chrX-167353842-3	chrX	167353758	167353958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313758, intron 4 of 6)	intron (NM_001313758, intron 4 of 6)	-23287.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	18.57	20.37	32.52	48.67	42.96	34.18	30.23	50.36	36.39	36.15	49.75	27.88
Merged-chr7-101538300-3	chr7	101538176	101538376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17526.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	52.09	26.66	43.35	24.53	59.73	51.74	33.55	37.93	54.68	57.74	41.71	31.64
Merged-chr7-29228360-3	chr7	29228265	29228465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	4157.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	72.68	68.67	100.97	76.02	81.82	91.88	82.71	87.73	97.16	125.02	136.68	63.91
Merged-chr4_GL456216_random-16498-1	chr4_GL456216_random	16398	16598	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 1 of 6)	CpG	617.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	92.25	120.51	134.16	78.0
Merged-chr2-168981122-3	chr2	168981039	168981239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2870.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	48.05	49.55	68.45	70.79	70.77	64.91	58.79	68.94	108.38	73.31	90.95	72.68
Merged-chr14-120363407-3	chr14	120363310	120363510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56958.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	25.04	17.86	27.95	36.6	34.36	42.96	62.78	90.2	37.76	31.13	56.28	41.98
Merged-chr16-21423569-1	chr16	21423469	21423669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001285894, intron 1 of 45)	CpG	451.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	10.09	19.62	7.99	11.26	5.32	7.53	17.61	9.79	8.46	16.07	8.54	9.08
Merged-chr10-19907499-3	chr10	19907401	19907601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008822, exon 1 of 10)	exon (NM_008822, exon 1 of 10)	173.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	82.78	99.61	99.83	89.29	97.78	113.83	106.63	69.56	76.12	113.98	104.52	78.0
Merged-chr16-14159485-3	chr16	14159386	14159586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030252)	promoter-TSS (NR_030252)	-140.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	186.96	191.92	190.53	162.49	231.96	270.3	173.39	188.16	272.81	298.75	312.54	151.93
Merged-chr9-107950937-3	chr9	107950837	107951037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011634)	promoter-TSS (NM_011634)	-26.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	24.63	21.88	26.81	23.33	40.09	21.95	16.28	20.13	24.39	47.7	33.67	19.11
Merged-chr3-146657653-3	chr3	146657539	146657739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6322.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	95.3	68.92	83.29	74.41	189.41	150.2	176.38	214.94	131.98	176.24	215.57	103.38
Merged-chr7-44997657-3	chr7	44997540	44997740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	-8.0	NR_045611	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	47.65	45.78	41.64	36.6	37.64	53.62	27.24	36.25	98.15	71.3	66.33	42.92
Merged-chr1-58774129-3	chr1	58774033	58774233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21241.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	27.05	15.85	29.09	31.37	28.64	16.31	33.22	47.36	20.06	17.07	26.13	22.56
Merged-chr4-95557432-3	chr4	95557342	95557542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113412)	promoter-TSS (NM_001113412)	-65.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	20.19	24.65	23.96	24.94	20.05	22.58	12.95	36.39	183.71	156.15	267.82	117.47
Merged-chr11-83550519-3	chr11	83550418	83550618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEa|LINE|L1	-20000.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	31.09	46.28	38.22	30.16	44.59	51.43	34.55	27.48	51.93	53.22	63.31	29.13
Merged-chr12-3823841-3	chr12	3823767	3823967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16707.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	17.77	20.63	11.98	20.51	24.96	25.71	11.63	24.14	30.49	31.13	40.7	26.63
Merged-chr2-23041605-3	chr2	23041520	23041720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-1379.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	32.3	21.88	31.95	37.0	63.82	44.21	29.9	41.44	54.68	61.76	82.41	48.56
Merged-chr2-70986967-2	chr2	70986865	70987065	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	31409.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.86	5.53	5.13	9.25	18.41	16.31	16.61	17.3	28.52	34.65	28.14	22.24
Merged-chr13-62760679-3	chr13	62760572	62760772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030493)	promoter-TSS (NR_030493)	-67.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	52.9	75.46	94.13	90.09	34.36	71.81	52.15	24.76	73.76	79.83	113.56	49.81
Merged-chr11-120040617-3	chr11	120040512	120040712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1169.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	31.09	28.42	28.52	20.51	45.82	51.74	21.59	51.98	50.16	33.14	32.66	31.33
Merged-chr17-53475758-1	chr17	53475658	53475858	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3476.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	6.06	4.28	3.42	10.86	11.86	3.14	5.98	11.05	2.36	3.01	8.54	8.77
Merged-chr9-47745809-2	chr9	47745722	47745922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	72386.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	31.5	19.37	43.93	34.99	33.55	51.11	32.22	40.4	7.08	14.56	2.01	5.01
Merged-chr6-82822080-3	chr6	82821982	82822182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47628.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	28.27	32.45	30.23	23.73	28.23	29.16	30.89	28.57	18.29	35.65	27.64	22.24
Merged-chr1-121462918-2	chr1	121462802	121463002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 10 of 23)	intron (NM_029955, intron 10 of 23)	31835.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	111.85	100.86	134.06	159.67	7.36	3.76	3.99	4.12	96.97	57.24	98.99	58.89
Merged-chr13-67399766-3	chr13	67399668	67399868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-1.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	56.13	51.06	70.17	59.53	74.46	83.1	39.86	61.6	117.03	112.97	115.07	55.45
Merged-chr7-25755103-6	chr7	25755003	25755203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360789)	promoter-TSS (NM_001360789)	-344.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	96.51	93.07	85.0	91.3	90.82	98.15	90.68	62.69	103.46	128.54	115.57	65.16
Merged-chr12-110696455-3	chr12	110696337	110696537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-42.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	147.39	135.07	127.78	117.84	195.55	251.8	107.62	136.43	209.28	282.69	228.63	126.25
Merged-chr13-23684788-3	chr13	23684673	23684873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	574.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	16.15	18.86	17.11	17.7	20.05	20.38	20.59	20.44	26.75	25.11	28.14	18.48
Merged-chr4-150799686-3	chr4	150799564	150799764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54132.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	53.3	49.55	55.33	51.48	52.77	52.37	54.81	50.83	70.02	69.79	71.35	43.54
Merged-chr12-12223541-3	chr12	12223447	12223647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38592.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	100.14	93.57	93.55	107.39	94.09	113.51	89.35	103.35	131.78	117.49	167.83	78.0
Merged-chr17-73107957-3	chr17	73107864	73108064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-21.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	138.91	86.53	106.68	112.62	128.87	121.04	90.02	132.67	174.66	160.17	227.12	81.76
Merged-chr7-19699771-3	chr7	19699682	19699882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	-594.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	53.7	39.74	31.38	63.15	60.96	66.79	42.52	67.04	66.68	77.83	74.37	36.34
Merged-chr1-191327626-3	chr1	191327482	191327682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	1617.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	19.38	13.58	27.38	31.37	26.59	17.56	17.27	28.26	37.57	17.07	41.2	22.24
Merged-chr4-137864974-3	chr4	137864861	137865061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	2724.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	51.69	32.7	98.12	71.59	159.96	72.12	141.84	199.43	69.04	55.23	120.6	50.44
Merged-chr12-102745026-3	chr12	102744908	102745108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001324515, exon 2 of 2)	exon (NM_001324515, exon 2 of 2)	1248.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	38.36	43.01	62.18	39.01	46.23	55.82	40.19	53.58	67.07	37.66	52.76	39.78
Merged-chr1-131096993-3	chr1	131096892	131097092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	CpG	851.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	100.55	110.17	96.98	113.82	91.64	125.74	100.98	75.9	85.95	89.88	168.83	53.88
Merged-chr11-59948178-3	chr11	59948086	59948286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045273)	promoter-TSS (NR_045273)	-28.0	NM_138675	192191.0	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	38.36	28.42	32.52	28.96	34.77	44.21	13.62	22.82	43.66	55.73	26.13	36.65
Merged-chr13-67553073-3	chr13	67552930	67553130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131100)	promoter-TSS (NR_131100)	122.0	NM_001035231	212276.0	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	43.21	60.37	37.65	51.88	63.82	59.58	71.42	61.79	53.5	47.7	73.36	37.91
Merged-chr16-25058219-3	chr16	25058126	25058326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1413.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	65.82	41.5	65.03	92.51	95.73	65.22	99.65	114.62	61.56	83.85	70.85	57.64
Merged-chr10-122792606-1	chr10	122792506	122792706	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	B2_Mm2|SINE|B2	113291.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.42	0.75	0.0	0.0	0.82	0.0	1.99	1.6	28.52	31.13	45.73	28.82
Merged-chr3-96635461-3	chr3	96635328	96635528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162387)	promoter-TSS (NM_001162387)	-2.0	NM_011069	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	31.09	23.64	15.4	35.8	19.23	23.2	20.26	39.59	24.39	15.57	48.74	20.99
Merged-chr3-98227280-3	chr3	98227178	98227378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026328, intron 2 of 5)	MIR|SINE|MIR	5122.0	NM_026328	67709.0	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	27.46	34.46	39.93	35.8	43.77	42.02	60.12	64.63	21.64	20.59	52.76	30.07
Merged-chr10-93160649-3	chr10	93160549	93160749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146239)	promoter-TSS (NM_146239)	-227.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	68.65	60.62	50.77	49.07	65.87	103.17	37.2	48.08	114.47	113.48	105.52	69.23
Merged-chr16-45142793-3	chr16	45142709	45142909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028756, intron 6 of 6)	intron (NM_028756, intron 6 of 6)	15864.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	52.49	48.29	31.95	53.09	60.96	61.77	37.54	60.65	47.99	40.17	42.71	16.29
Merged-chr15-93275843-1	chr15	93275743	93275943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-664.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	23.82	20.37	32.52	26.95	29.46	16.93	25.58	23.16	21.64	26.61	31.15	20.99
Merged-chr9-96391509-3	chr9	96391373	96391573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27042.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	20.19	10.06	15.4	18.5	14.32	13.17	15.28	20.38	25.18	26.61	47.74	26.0
Merged-chr11-69424074-3	chr11	69423964	69424164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-10389.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	53.7	57.6	55.9	58.72	76.5	100.97	74.74	101.41	92.84	82.35	110.55	47.62
Merged-chr5-25705790-3	chr5	25705681	25705881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020570)	promoter-TSS (NM_020570)	16.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	39.98	43.77	39.93	43.04	52.77	57.38	43.85	51.73	60.38	57.24	66.83	37.59
Merged-chr15-81836619-3	chr15	81836517	81836717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21709.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	35.53	38.23	51.34	34.19	64.64	48.6	38.2	52.29	77.69	66.28	80.4	41.98
Merged-chr19-10880248-3	chr19	10880138	10880338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	1505.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	78.74	88.54	127.21	105.38	106.78	102.54	82.05	91.4	83.2	81.84	110.55	52.94
Merged-chr2-128128071-3	chr2	128127974	128128174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284410, intron 1 of 3)	CpG-8520	499.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	63.8	54.08	61.61	53.89	67.09	73.69	74.41	79.63	76.12	51.72	66.33	36.65
Merged-chr1-64360678-2	chr1	64360577	64360777	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172127.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.81	0.5	3.99	6.84	25.36	18.19	34.21	37.93	20.26	17.57	25.63	12.53
Merged-chr4-125066699-3	chr4	125066610	125066810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175246)	promoter-TSS (NM_175246)	38.0	NM_001356560	76793.0	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	46.44	36.47	48.49	46.66	53.59	46.1	42.19	48.45	59.99	70.29	87.43	36.97
Merged-chr11-115134009-3	chr11	115133884	115134084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145634)	promoter-TSS (NM_145634)	8.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	46.03	46.03	48.49	47.46	60.55	66.79	39.2	50.8	54.48	58.75	74.87	39.78
Merged-chr1-86064349-3	chr1	86064267	86064467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027357)	promoter-TSS (NM_027357)	-252.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	22.21	11.57	19.4	22.93	36.0	32.61	25.24	23.47	48.78	33.64	44.72	23.18
Merged-chr14-118709910-3	chr14	118709818	118710018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-3699.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	21.0	28.42	54.76	51.88	26.59	34.81	27.9	57.31	54.29	39.16	48.74	21.93
Merged-chr14-59557268-1	chr14	59557168	59557368	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40691.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	6.86	4.53	4.56	6.44	5.73	5.33	10.63	7.35	9.44	8.03	8.54	3.45
Merged-chr10-63023997-3	chr10	63023904	63024104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-155.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	116.7	96.84	84.43	106.99	128.87	145.81	114.93	92.55	170.33	171.22	175.37	116.54
Merged-chr7-83645646-3	chr7	83645543	83645743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 18 of 18)	intron (NM_001360088, intron 18 of 18)	9852.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	79.55	95.58	103.25	102.96	64.23	111.0	69.42	100.77	111.13	97.41	109.04	55.13
Merged-chr11-3152537-2	chr11	3152436	3152636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	28515.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	8.48	23.9	19.97	19.71	21.68	21.64	20.59	15.45	1.18	0.0	0.0	0.94
Merged-chr14-21501217-3	chr14	21501098	21501298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017479, intron 1 of 16)	CpG	1413.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	59.76	71.43	77.58	71.99	64.23	94.07	78.06	76.63	146.34	143.1	163.81	74.56
Merged-chr5-100518307-3	chr5	100518220	100518420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	11.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	189.78	176.57	201.37	193.86	227.05	257.76	166.42	245.27	225.01	195.32	323.1	144.1
Merged-chr10-40229950-3	chr10	40229850	40230050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17029.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	24.63	21.38	31.95	18.9	29.46	25.09	23.25	40.09	33.63	30.13	23.62	18.17
Merged-chr13-24800747-3	chr13	24800633	24800833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-924.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	78.34	84.01	112.38	65.16	101.46	132.95	63.11	101.08	143.58	165.19	206.02	93.67
Merged-chr4-55651265-3	chr4	55651159	55651359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-118784.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	159.5	215.06	177.41	242.93	213.14	241.14	208.94	233.97	276.15	285.7	416.56	218.03
Merged-chr4-150064429-3	chr4	150064325	150064525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4029.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	47.24	18.86	42.78	37.81	90.82	74.63	85.04	62.55	47.6	30.63	46.23	30.07
Merged-chr4-116807671-3	chr4	116807573	116807773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133250)	promoter-TSS (NM_133250)	-61.0	NM_133250	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	113.47	151.92	164.86	138.76	135.0	203.82	97.99	161.52	196.88	206.37	284.41	123.74
Merged-chr2-129515186-3	chr2	129515087	129515287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	21415.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	71.07	71.94	99.83	76.42	86.73	101.91	65.77	96.7	108.38	96.91	110.04	60.77
Merged-chr10-60738322-3	chr10	60738237	60738437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	B1_Mm|SINE|Alu	14445.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	31.9	28.42	51.91	35.8	23.73	28.22	34.55	8.27	35.21	26.11	35.17	19.74
Merged-chr2-150136684-3	chr2	150136588	150136788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181266)	promoter-TSS (NM_181266)	-10.0	NM_181266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	113.87	148.15	148.32	182.6	151.37	146.12	126.56	166.94	204.16	178.25	292.44	145.36
Merged-chr10-127536004-3	chr10	127535887	127536087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1428.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	25.04	20.63	33.09	17.7	21.68	41.71	23.58	18.11	27.34	22.59	36.18	38.85
Merged-chr11-97241460-3	chr11	97241341	97241541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008942, intron 8 of 22)	intron (NM_008942, intron 8 of 22)	39135.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	41.59	28.42	47.92	23.73	66.68	48.6	30.23	57.17	41.5	34.14	49.75	20.68
Merged-chr14-67188515-3	chr14	67188424	67188624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44768.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	37.55	25.91	27.38	33.78	46.64	52.99	26.24	28.99	42.29	46.19	48.24	24.75
Merged-chr4-33099327-3	chr4	33099224	33099424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33232.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	57.34	43.01	38.79	47.06	34.77	56.44	44.84	61.18	57.04	44.69	70.35	22.24
Merged-chr1-184563079-3	chr1	184562977	184563177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5386.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	41.99	32.45	55.33	73.6	47.87	64.91	53.15	50.16	64.71	47.7	51.25	41.04
Merged-chr11-54727566-3	chr11	54727473	54727673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	60130.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	28.27	22.13	21.11	24.53	31.09	26.34	11.63	15.84	36.19	29.12	39.19	13.16
Merged-chr11-52094795-3	chr11	52094714	52094914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4010.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	43.61	35.21	58.76	63.15	75.28	34.81	46.17	72.0	46.22	38.16	54.77	32.27
Merged-chr6-116682454-3	chr6	116682343	116682543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8607.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	52.9	39.49	61.04	82.85	68.73	58.32	48.16	63.17	70.41	80.34	102.51	57.01
Merged-chr15-58734317-3	chr15	58734227	58734427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89100.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	58.95	78.98	90.7	78.43	91.23	119.47	70.75	97.37	100.7	82.35	121.1	61.09
Merged-chr17-71489884-3	chr17	71489791	71489991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14548.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	21.4	26.41	15.4	34.59	22.09	28.22	17.27	24.36	42.68	55.23	70.85	33.21
Merged-chr3-107087579-3	chr3	107087469	107087669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-13998.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	55.72	69.67	55.33	81.65	64.64	52.68	50.82	76.15	75.33	88.87	98.99	59.83
Merged-chr13-67375764-3	chr13	67375670	67375870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-7.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	140.12	117.97	170.0	119.45	145.64	151.14	73.08	105.11	198.65	187.79	216.57	98.99
Merged-chr8-70538185-3	chr8	70538081	70538281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	124.37	101.62	94.7	90.49	112.5	148.32	86.7	90.0	140.44	153.14	160.79	81.14
Merged-chr10-5824269-3	chr10	5824160	5824360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-317.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	211.19	259.07	240.16	247.76	257.74	322.35	224.22	254.05	284.41	313.31	436.15	202.37
Merged-chr10-128270415-3	chr10	128270308	128270508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-90.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	165.15	134.82	166.57	131.52	160.37	208.53	127.89	145.49	204.75	202.35	208.53	111.52
Merged-chr13-43767906-3	chr13	43767782	43767982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17230.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	42.8	37.48	30.8	34.59	54.41	74.32	38.2	43.68	77.89	64.77	61.81	30.7
Merged-chr6-28423537-3	chr6	28423433	28423633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-71.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	52.09	57.6	62.18	56.71	64.23	92.19	47.17	62.24	97.56	84.86	148.23	49.5
Merged-chr8-116314886-3	chr8	116314766	116314966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-190149.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	45.23	27.67	52.48	39.01	39.27	41.39	42.85	46.07	45.04	37.16	44.72	21.3
Merged-chr2-73054248-3	chr2	73054153	73054353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73807.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	88.43	83.51	119.8	111.81	119.46	107.24	122.24	124.32	132.57	98.41	174.86	85.52
Merged-chr18-56925622-3	chr18	56925533	56925733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-85.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	280.23	252.03	304.05	278.32	282.28	318.28	225.21	359.86	346.17	347.46	480.88	224.3
Merged-chr5-149184462-3	chr5	149184368	149184568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286825)	promoter-TSS (NM_001286825)	-92.0	NM_001115153	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	218.45	223.61	240.16	226.04	232.78	291.31	211.59	184.21	300.34	348.96	410.03	188.27
Merged-chr7-28741928-3	chr7	28741903	28742103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	35.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	77.93	74.7	92.41	84.46	90.41	105.67	55.14	93.51	101.69	120.0	95.97	67.67
Merged-chr1-66817025-3	chr1	66816934	66817134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	CpG	561.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	102.97	87.28	71.88	89.69	126.0	111.95	95.67	88.88	160.89	193.31	155.77	134.39
Merged-chr14-40921416-3	chr14	40921333	40921533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	26776.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	58.55	35.97	61.04	109.4	62.18	74.32	65.44	80.24	48.98	75.82	87.93	37.91
Merged-chr7-24593879-3	chr7	24593777	24593977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023154, exon 2 of 8)	5' UTR (NM_023154, exon 2 of 8)	-6236.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	20.59	13.58	16.54	23.33	27.82	32.3	20.93	37.91	37.37	21.59	42.71	15.04
Merged-chr2-129801507-3	chr2	129801408	129801608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029452)	promoter-TSS (NR_029452)	-49.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	29.07	32.7	30.23	14.08	20.05	41.08	15.28	18.53	43.47	43.18	37.18	25.37
Merged-chr13-23574343-3	chr13	23574231	23574431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	-50.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	119.93	132.81	118.08	179.78	155.87	160.24	122.24	150.42	213.21	167.7	219.58	139.72
Merged-chr4-81742732-3	chr4	81742636	81742836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-255723.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	18.98	21.38	31.38	17.7	28.23	20.07	20.26	34.6	44.65	28.62	64.32	17.54
Merged-chr7-67372869-3	chr7	67372768	67372968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-10.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	69.45	49.55	44.5	44.24	62.59	68.67	37.54	52.85	103.46	101.93	107.03	54.82
Merged-chr5-134452506-3	chr5	134452356	134452556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	3806.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	22.61	30.18	35.94	31.37	32.73	57.07	58.46	57.65	73.76	52.72	72.36	34.46
Merged-chr11-101984262-3	chr11	101984170	101984370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	121.95	107.4	95.84	110.6	117.41	143.93	69.09	74.3	148.5	134.56	143.71	78.94
Merged-chr15-59828619-3	chr15	59828535	59828735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33676.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	43.61	43.51	44.5	55.1	53.59	82.47	65.11	58.09	82.81	82.35	75.87	57.01
Merged-chr4-117041605-3	chr4	117041500	117041700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22198.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	34.32	28.42	41.07	50.27	45.0	37.94	44.18	45.79	45.43	45.69	54.27	43.86
Merged-chr2-5036585-3	chr2	5036462	5036662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-23771.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	52.09	51.56	29.09	35.39	34.77	41.08	14.62	29.24	58.42	72.3	55.78	33.52
Merged-chr10-80161000-3	chr10	80160893	80161093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-6846.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	30.28	30.18	34.8	28.56	38.86	40.14	40.19	44.89	37.17	48.7	49.75	26.94
Merged-chr1-171957526-3	chr1	171957430	171957630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38174.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	49.26	42.26	49.63	58.72	42.55	27.91	29.9	40.26	42.68	41.67	41.71	29.76
Merged-chr2-118479715-3	chr2	118479606	118479806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009273)	promoter-TSS (NM_009273)	-10.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	98.53	88.54	70.74	79.64	87.55	127.31	50.82	101.08	106.6	108.96	104.52	62.03
Merged-chr11-84555022-3	chr11	84554924	84555124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	29364.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	31.9	47.29	63.32	45.85	58.09	64.91	40.19	55.65	69.43	76.32	59.8	54.51
Merged-chr7-121258961-1	chr7	121258861	121259061	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133335.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	7.67	4.02	5.7	4.42	5.73	5.96	3.99	5.86	15.34	8.03	15.07	5.01
Merged-chr2-6267767-3	chr2	6267653	6267853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-54759.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	65.01	54.58	106.68	107.39	74.05	74.94	69.09	98.24	90.08	69.79	148.23	76.44
Merged-chr7-116093233-3	chr7	116093140	116093340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019772)	promoter-TSS (NM_019772)	-91.0	NR_029433	69350.0	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	176.05	176.32	198.52	195.87	203.32	245.84	160.11	230.27	246.06	222.93	304.0	169.48
Merged-chr17-73942743-3	chr17	73942639	73942839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 2 of 35)	MIRb|SINE|MIR	7457.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	15.75	12.58	37.08	8.45	22.5	23.52	22.26	32.89	24.0	15.57	28.64	16.29
Merged-chr3-27710570-3	chr3	27710529	27710729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-177.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	39.17	57.35	30.23	69.98	56.87	79.33	48.16	47.69	56.65	60.25	56.28	43.86
Merged-chr12-3344420-3	chr12	3344317	3344517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20715.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	105.79	75.96	124.93	90.49	110.46	151.77	93.67	103.88	106.41	118.5	162.3	64.22
Merged-chr11-110166083-3	chr11	110165988	110166188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	2065.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	94.08	72.19	64.46	82.05	78.96	71.18	52.15	66.81	73.95	69.79	62.81	48.87
Merged-chr1-180300481-3	chr1	180300381	180300581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-29995.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	55.32	53.83	68.45	76.02	65.05	97.21	76.4	77.69	82.02	85.36	130.14	68.92
Merged-chr15-86214399-3	chr15	86214310	86214510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145476)	promoter-TSS (NM_145476)	-49.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	72.68	59.11	46.21	66.77	60.14	76.2	55.47	71.92	90.87	102.93	91.95	67.04
Merged-chr8-4312253-1	chr8	4312153	4312353	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010485, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	12847.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	4.04	3.27	4.56	5.23	5.73	2.51	7.64	13.43	7.67	6.03	3.52	7.83
Merged-chr17-67347333-5	chr17	67347234	67347434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	75.11	69.92	47.92	70.38	83.05	86.23	77.4	73.88	60.19	97.41	92.96	44.17
Merged-chr11-69672489-3	chr11	69672405	69672605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-82.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	278.62	291.52	303.48	309.29	322.78	392.59	256.77	276.87	347.15	331.39	404.0	214.59
Merged-chr16-13160503-3	chr16	13160389	13160589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50753.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	73.49	92.56	67.31	115.43	101.05	80.27	96.0	96.45	88.12	93.89	66.33	42.29
Merged-chr8-84981093-3	chr8	84980984	84981184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2336.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	138.1	148.65	146.61	117.44	135.41	139.23	160.44	105.95	141.42	131.05	140.7	98.37
Merged-chr10-94960255-3	chr10	94960230	94960430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-15752.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	2.83	13.33	13.69	19.31	20.86	16.62	21.92	28.85	16.13	17.07	10.55	12.53
Merged-chr11-34072486-3	chr11	34072391	34072591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	25563.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	109.43	80.49	154.59	118.65	126.41	121.98	111.28	131.89	120.37	126.53	161.8	76.75
Merged-chr13-92530823-3	chr13	92530708	92530908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173392)	promoter-TSS (NM_173392)	2.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	101.76	118.72	119.8	124.68	123.14	115.39	110.28	122.38	124.9	167.2	146.72	105.57
Merged-chr5-121824314-3	chr5	121824212	121824412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-5039.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	23.02	16.85	22.82	25.74	45.41	26.34	27.57	33.81	21.44	24.1	44.72	15.66
Merged-chr5-92083840-3	chr5	92083744	92083944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080795)	promoter-TSS (NM_001080795)	-100.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	218.05	261.34	208.79	232.87	236.05	277.2	181.37	264.17	274.58	320.34	348.72	155.07
Merged-chr9-57521204-3	chr9	57521110	57521310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-22.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	60.97	80.24	74.16	38.21	69.14	109.75	50.16	57.2	91.26	109.46	83.41	65.79
Merged-chr11-58214893-3	chr11	58214785	58214985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019440)	promoter-TSS (NM_019440)	-92.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	73.09	80.99	110.1	89.69	90.82	84.98	56.47	57.14	60.78	74.31	88.94	53.26
Merged-chr10-70097008-3	chr10	70096919	70097119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111121)	promoter-TSS (NM_001111121)	-102.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	53.3	57.85	70.74	61.54	63.41	79.02	56.47	67.91	60.78	47.7	82.91	45.11
Merged-chr15-53130934-3	chr15	53130814	53131014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215269.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	50.88	32.95	47.35	39.42	50.32	47.66	53.48	70.74	72.18	38.66	63.31	24.43
Merged-chr15-55557355-3	chr15	55557263	55557463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	-45.0	NM_134092	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	18.57	28.67	22.25	23.73	21.27	19.76	15.94	18.42	29.31	28.62	34.17	33.83
Merged-chr5-21132135-3	chr5	21132046	21132246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44133.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	94.08	84.76	132.92	103.37	113.32	107.87	95.33	126.06	100.11	99.92	130.14	67.67
Merged-chr16-36639951-3	chr16	36639851	36640051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	26126.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	64.61	70.43	97.55	71.59	73.23	82.16	80.39	94.65	81.82	73.31	113.06	49.5
Merged-chr8-69088633-3	chr8	69088528	69088728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-108.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	114.68	123.0	114.09	136.35	113.73	117.28	81.71	89.47	160.89	176.24	156.27	110.9
Merged-chr9-113781041-3	chr9	113780951	113781151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-12279.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	32.71	24.4	27.38	37.81	33.55	31.67	20.26	42.53	45.83	25.61	34.67	18.17
Merged-chr11-101466211-3	chr11	101466106	101466306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	-7.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	43.21	25.4	31.95	28.96	54.0	37.0	19.93	40.09	33.63	49.21	36.68	27.25
Merged-chr18-30444870-3	chr18	30444798	30444998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172033.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	21.4	12.32	30.8	41.43	72.82	36.06	40.52	58.32	46.03	35.15	63.82	31.01
Merged-chr7-7298671-3	chr7	7298597	7298797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	139.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	165.96	177.33	173.99	186.22	206.19	211.35	260.75	159.14	175.25	229.46	176.37	122.8
Merged-chr19-45048233-3	chr19	45048126	45048326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362381, intron 1 of 10)	intron (NM_001362381, intron 1 of 10)	650.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	28.67	25.66	34.8	24.53	38.05	38.88	16.94	41.75	36.58	33.14	36.18	18.48
Merged-chr4-83323737-2	chr4	83323612	83323812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	CpG	477.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	29.48	50.81	22.25	59.93	42.55	38.26	53.48	31.54	51.34	48.7	53.26	35.09
Merged-chr9-94538549-4	chr9	94538483	94538683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-502.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	124.37	202.73	150.6	224.43	164.05	165.57	215.91	184.01	188.62	198.33	270.34	137.21
Merged-chr15-75679451-3	chr15	75679338	75679538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-638.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	22.61	48.8	26.24	28.15	21.68	31.98	15.94	26.5	39.53	42.18	41.71	33.83
Merged-chr12-112976533-3	chr12	112976424	112976624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145900)	promoter-TSS (NM_001145900)	-39.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	35.53	21.13	22.82	21.72	29.46	22.58	16.61	33.14	21.44	33.64	55.27	21.93
Merged-chr1-182562804-3	chr1	182562709	182562909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2198.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	30.69	34.96	61.04	38.61	42.96	42.65	34.55	56.97	48.98	23.1	62.31	26.94
Merged-chr8-79294961-3	chr8	79294842	79295042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133823)	promoter-TSS (NM_133823)	14.0	NM_133823	109136.0	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	236.22	193.68	289.79	252.18	261.83	293.82	248.8	234.31	266.91	275.66	340.68	168.22
Merged-chr8-116921711-6	chr8	116921534	116921734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028131)	promoter-TSS (NM_028131)	-106.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	74.3	89.29	76.44	65.16	88.37	105.36	90.68	64.82	57.04	88.37	75.87	52.32
Merged-chr13-19855088-3	chr13	19854967	19855167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30810.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	28.67	33.96	21.11	36.2	48.68	27.59	25.58	22.09	29.9	20.08	29.65	12.53
Merged-chr8-70234482-3	chr8	70234300	70234500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133972)	promoter-TSS (NM_133972)	22.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	37.96	47.04	37.08	54.7	43.77	60.21	38.53	48.34	75.13	58.75	58.79	45.42
Merged-chr8-122923082-3	chr8	122922962	122923162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	74688.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	52.49	49.8	42.78	52.29	34.77	39.82	18.93	38.94	29.9	58.75	61.3	23.18
Merged-chr11-70410122-3	chr11	70410014	70410214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029231)	promoter-TSS (NM_029231)	-83.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	31.5	28.93	19.4	25.34	28.64	35.12	17.27	26.44	34.81	36.15	26.63	33.21
Merged-chr10-95416839-3	chr10	95416742	95416942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045338)	promoter-TSS (NR_045338)	15.0	NM_007706	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	44.82	41.75	39.36	37.81	36.82	57.07	32.55	40.65	57.24	42.18	40.7	37.59
Merged-chr1-131827933-3	chr1	131827846	131828046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-66.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	102.56	88.79	93.55	115.83	134.6	129.19	88.69	111.45	121.95	150.63	136.17	84.58
Merged-chr13-54218510-3	chr13	54218436	54218636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26403.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	90.45	89.29	100.4	104.17	73.23	83.72	67.1	97.51	99.33	96.4	122.1	67.04
Merged-chr16-58507907-3	chr16	58507756	58507956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	15570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	11.31	14.59	9.7	17.7	11.45	11.92	17.27	12.64	17.7	29.12	17.59	17.23
Merged-chr2-124576240-3	chr2	124576144	124576344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-34052.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	58.15	57.6	75.87	60.73	58.5	56.13	53.15	63.5	51.34	37.66	48.74	32.89
Merged-chr9-109023491-3	chr9	109023389	109023589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	MLT1-int|LTR|ERVL-MaLR	-15078.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	58.95	37.73	33.09	48.26	39.27	61.46	23.25	41.16	39.73	46.19	42.21	36.97
Merged-chr13-93498522-1	chr13	93498422	93498622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	1286.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	7.67	10.82	5.7	3.62	13.91	14.74	10.63	9.28	12.19	8.03	12.56	10.34
Merged-chr2-129309213-3	chr2	129309111	129309311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 1 of 6)	intron (NM_010554, intron 1 of 6)	761.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	61.78	51.56	67.88	57.11	31.91	84.35	32.88	45.62	65.5	69.29	55.27	59.21
Merged-chr5-30232521-3	chr5	30232412	30232612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_137634)	promoter-TSS (NR_137634)	-69.0	NM_027652	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	139.31	147.65	160.3	131.12	187.37	184.69	137.85	169.21	159.32	182.77	167.33	100.87
Merged-chr5-103754832-3	chr5	103754710	103754910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	237.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	60.97	35.72	33.66	50.27	27.0	47.98	40.52	32.55	64.12	63.27	57.79	51.06
Merged-chr7-92636675-1	chr7	92636575	92636775	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	467.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	5.65	15.59	6.28	17.29	9.41	11.29	16.94	16.71	12.19	13.05	25.63	10.96
Merged-chr10-75773463-3	chr10	75773339	75773539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-65.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	62.99	73.95	58.19	81.24	71.18	76.51	51.15	102.11	103.06	99.92	121.6	60.77
Merged-chr13-100750938-2	chr13	100750845	100751045	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6286.0	NM_025369	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	5.65	7.8	6.28	4.83	18.41	27.91	12.95	14.16	21.05	30.13	28.64	16.6
Merged-chr2-164879929-3	chr2	164879823	164880023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146129, intron 1 of 16)	CpG	555.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	88.03	72.19	99.83	71.59	125.19	110.06	100.32	81.48	114.47	127.03	109.54	84.9
Merged-chr3-88082011-3	chr3	88081923	88082123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-28.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	23.42	24.9	29.66	20.51	34.36	37.94	18.93	31.18	38.75	38.16	42.21	28.82
Merged-chr4-86874301-3	chr4	86874180	86874380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290541)	promoter-TSS (NM_001290541)	-134.0	NM_001290543	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	180.09	216.82	117.51	122.67	184.51	246.78	97.66	156.31	206.52	177.75	219.58	63.28
Merged-chr16-94241341-3	chr16	94241243	94241443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	48948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	66.63	52.57	94.7	65.56	76.5	107.87	69.09	94.74	104.44	103.43	123.11	52.32
Merged-chr9-70207269-3	chr9	70207158	70207358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181072)	promoter-TSS (NM_181072)	-92.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	101.76	96.84	108.96	108.19	108.0	100.66	82.38	107.92	78.28	72.81	120.09	80.51
Merged-chr3-16008019-3	chr3	16007905	16008105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	46.84	45.53	79.86	68.37	72.0	68.99	44.18	77.92	71.59	86.86	68.84	41.98
Merged-chr4-8911729-3	chr4	8911643	8911843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	160419.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	20.59	19.87	29.09	23.33	30.68	31.04	31.22	23.47	36.39	45.69	62.81	33.52
Merged-chr14-52023118-4	chr14	52023001	52023201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2368.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	20.59	22.13	24.53	25.34	16.36	25.4	14.28	19.15	22.23	32.13	23.11	19.42
Merged-chr16-31932970-3	chr16	31932865	31933065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-886.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	82.78	75.96	81.0	64.75	77.73	102.54	62.45	67.01	112.31	81.84	108.03	48.56
Merged-chr12-3891489-3	chr12	3891422	3891622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-222.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	35.53	36.72	23.96	43.04	47.87	42.65	23.25	45.08	35.8	41.67	36.68	22.87
Merged-chr18-12121423-3	chr18	12121308	12121508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289666, exon 1 of 15)	exon (NM_001289666, exon 1 of 15)	129.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	60.97	59.86	48.49	86.88	73.64	93.44	112.94	82.29	41.89	53.22	48.74	48.56
Merged-chr2-24367587-3	chr2	24367478	24367678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-97.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	77.12	64.89	87.28	68.78	59.32	68.67	48.83	56.07	76.51	67.78	94.47	48.24
Merged-chr9-53387513-5	chr9	53387399	53387599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 1 of 7)	URR1A|DNA|hAT-Charlie	3476.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	19.38	22.89	23.39	26.55	31.91	27.59	39.86	37.07	37.96	23.1	39.19	27.25
Merged-chr12-85992642-3	chr12	85992530	85992730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86411.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	63.8	56.85	63.32	57.92	74.46	71.18	39.86	81.79	65.69	60.25	97.48	45.42
Merged-chr1-180904250-3	chr1	180904152	180904352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133705)	promoter-TSS (NM_133705)	-22.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	46.84	38.23	49.63	41.43	78.14	60.21	36.87	52.51	87.33	61.26	114.06	57.95
Merged-chr5-116024545-3	chr5	116024479	116024679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031869)	promoter-TSS (NM_031869)	-151.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	53.7	48.04	51.91	78.83	54.41	58.64	48.5	53.8	60.38	66.28	96.98	41.35
Merged-chr15-81811406-3	chr15	81811321	81811521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	7.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	145.37	148.4	138.62	133.53	164.87	185.95	126.89	146.27	191.18	207.37	267.82	118.1
Merged-chr16-38457366-3	chr16	38457268	38457468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1565.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	117.1	89.8	79.86	119.86	105.14	138.91	106.63	115.09	132.76	158.16	127.13	82.08
Merged-chr2-164911649-6	chr2	164911556	164911756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	94.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	19.38	14.59	18.25	13.27	11.05	25.71	9.3	10.04	23.21	28.62	20.1	24.75
Merged-chr10-63382798-3	chr10	63382636	63382836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	293.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	44.82	32.7	34.8	28.96	51.96	54.88	26.24	55.49	44.06	33.14	58.29	24.43
Merged-chr6-13874167-3	chr6	13874108	13874308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2639.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	71.88	61.88	61.61	58.32	94.91	93.76	70.42	93.98	113.1	119.5	108.54	56.07
Merged-chr6-85333986-3	chr6	85333872	85334072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-550.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	27.46	27.17	26.81	37.81	45.82	34.49	15.61	37.29	63.33	46.7	44.72	32.27
Merged-chr13-103411976-1	chr13	103411876	103412076	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77484.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.81	0.5	0.0	0.4	22.09	26.34	14.95	17.44	4.33	10.04	2.51	1.57
Merged-chrX-18956854-1	chrX	18956754	18956954	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B5|LTR|ERVL	189534.0	NR_029806	723827.0		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	3.23	3.02	5.7	24.94	0.41	2.51	8.64	14.05	6.69	3.01	7.03	2.51
Merged-chr10-93357862-2	chr10	93357715	93357915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	21604.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	38.76	57.6	63.89	51.88	52.77	68.36	48.5	36.59	4.92	3.51	4.52	4.07
Merged-chrX-157598511-5	chrX	157598388	157598588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172307, intron 1 of 10)	CpG	227.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	16.15	26.91	14.26	12.07	25.77	30.1	32.55	24.17	28.52	29.12	24.12	24.12
Merged-chr4-145037180-3	chr4	145037088	145037288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144051.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	23.82	26.41	57.62	51.88	47.46	49.23	44.84	79.37	42.68	28.62	48.24	31.33
Merged-chr12-52006497-3	chr12	52006411	52006611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-4.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	44.82	40.24	44.5	34.19	58.91	49.23	27.57	40.32	61.76	62.76	65.83	37.28
Merged-chr14-102981776-1	chr14	102981676	102981876	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039592)	TTS (NR_039592)	856.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	72.28	75.21	40.5	59.53	34.77	56.76	40.19	43.21	88.71	84.35	79.89	42.29
Merged-chr14-101609236-3	chr14	101609123	101609323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081278)	promoter-TSS (NM_001081278)	-32.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	22.61	20.37	16.54	20.51	30.68	31.98	32.55	32.61	29.31	27.62	48.24	12.84
Merged-chr8-105289208-3	chr8	105289109	105289309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177788)	TTS (NM_177788)	319.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	115.49	129.29	71.31	72.8	103.91	166.51	75.73	94.88	167.97	181.76	175.87	101.81
Merged-chr11-117828398-3	chr11	117828301	117828501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-2387.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	49.26	49.8	44.5	24.13	65.05	82.47	35.21	34.71	95.79	70.29	88.44	34.46
Merged-chr9-107587604-3	chr9	107587503	107587703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025903)	promoter-TSS (NM_025903)	-115.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	151.83	148.9	140.33	154.85	162.82	203.82	137.19	161.22	166.2	171.72	261.79	102.44
Merged-chr3-126597098-4	chr3	126596960	126597160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001293665, exon 1 of 20)	5' UTR (NM_001293665, exon 1 of 20)	109.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	43.21	48.54	35.37	60.73	52.77	41.39	53.48	39.93	47.6	41.67	52.76	42.92
Merged-chr11-103267577-3	chr11	103267490	103267690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-189.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	268.93	268.38	217.34	240.52	249.96	357.47	186.02	186.45	309.0	399.68	378.37	186.08
Merged-chr7-27228615-3	chr7	27228537	27228737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181593)	promoter-TSS (NM_181593)	-40.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	188.57	233.67	154.59	172.54	191.46	259.01	160.11	152.16	262.19	238.5	258.78	134.7
Merged-chr11-103984288-2	chr11	103984200	103984400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304574, exon 5 of 5)	3' UTR (NM_001304574, exon 5 of 5)	17429.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.81	1.01	3.42	0.0	113.73	125.74	104.97	112.35	124.31	145.61	124.11	70.8
Merged-chr13-58158730-3	chr13	58158625	58158825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198004, intron 1 of 4)	B3|SINE|B2	1076.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	24.63	16.85	24.53	14.48	24.55	25.4	12.62	22.54	45.24	32.64	23.62	15.04
Merged-chr16-92787204-3	chr16	92787095	92787295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	38879.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	22.61	28.17	46.78	28.96	41.73	32.61	37.2	71.5	49.96	39.67	29.65	20.99
Merged-chr14-19975145-3	chr14	19975084	19975284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	1509.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	41.99	25.91	31.95	25.34	35.59	39.82	17.27	32.92	28.13	32.13	28.64	23.81
Merged-chr17-47295392-3	chr17	47295300	47295500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65170.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	38.36	44.02	71.88	34.19	42.96	63.03	45.51	48.06	63.14	53.22	56.78	46.05
Merged-chr17-35667600-3	chr17	35667513	35667713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175137)	promoter-TSS (NM_175137)	-21.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	48.05	34.21	26.81	17.7	49.5	58.01	20.59	43.82	54.68	45.69	63.31	44.17
Merged-chr5-65492947-3	chr5	65492846	65493046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-111.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	172.42	169.53	164.29	166.91	160.37	247.41	134.53	145.04	191.57	197.33	283.9	126.56
Merged-chr4-105169121-1	chr4	105169021	105169221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11774.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.27	4.78	7.99	16.09	4.09	2.2	6.64	15.25	4.52	8.54	6.53	3.76
Merged-chr3-154597109-3	chr3	154597028	154597228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168358)	promoter-TSS (NM_001168358)	-30.0	NM_172474	209584.0	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	33.92	16.85	31.38	32.98	46.64	61.77	29.56	55.23	68.45	71.3	114.57	45.74
Merged-chr1-128244164-3	chr1	128243998	128244198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026390)	promoter-TSS (NM_026390)	-39.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	95.7	75.96	72.45	51.08	97.78	113.51	54.48	85.49	136.11	130.55	152.75	73.3
Merged-chr6-125313916-3	chr6	125313811	125314011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010736)	promoter-TSS (NM_010736)	-26.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	93.68	64.89	126.64	88.08	124.78	112.57	74.74	100.29	145.75	133.56	185.42	101.19
Merged-chr19-4097632-1	chr19	4097532	4097732	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026373, intron 1 of 3)	intron (NM_026373, intron 1 of 3)	281.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	54.51	50.05	30.8	26.14	51.14	71.18	47.5	41.8	60.38	61.26	54.27	49.5
Merged-chr1-191168991-1	chr1	191168891	191169091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4174.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	9.29	8.55	2.28	0.0	4.5	8.47	0.0	0.59	0.39	14.06	1.0	1.25
Merged-chr9-114861646-3	chr9	114861563	114861763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17511.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	40.38	41.25	78.15	75.21	54.41	52.99	74.07	85.79	38.75	30.63	70.85	30.7
Merged-chr14-27508464-3	chr14	27508359	27508559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177111)	promoter-TSS (NM_177111)	1.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	45.23	41.0	47.92	45.45	62.18	37.63	45.84	49.74	34.22	40.67	40.2	24.12
Merged-chr5-123141319-3	chr5	123141290	123141490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-803.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	23.42	14.59	23.39	16.09	23.73	27.91	19.6	16.96	38.55	55.73	39.7	28.19
Merged-chr10-95677702-3	chr10	95677612	95677812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-113566.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	82.37	68.16	88.99	102.56	96.96	95.95	129.21	114.59	140.83	100.42	146.22	83.96
Merged-chr11-20532642-3	chr11	20532491	20532691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10662.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	42.4	49.8	46.21	20.51	28.64	65.54	44.84	31.35	43.47	50.21	34.67	14.1
Merged-chr6-21949549-3	chr6	21949436	21949636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-35.0	NM_001311061	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	281.04	263.1	225.9	280.74	318.28	348.69	226.87	324.14	340.47	337.42	343.2	214.59
Merged-chr15-53668560-1	chr15	53668460	53668660	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 3 of 4)	MLT1K|LTR|ERVL-MaLR	-54281.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	5.65	3.77	5.13	8.85	1.64	1.88	9.3	11.86	2.36	5.02	13.06	4.39
Merged-chrX-71214921-3	chrX	71214812	71215012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019926)	promoter-TSS (NM_019926)	-94.0	NM_001164192	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	66.63	62.13	58.76	92.51	83.87	97.21	77.06	89.94	92.84	120.51	142.2	45.11
Merged-chr6-119809315-3	chr6	119809222	119809422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155458, intron 2 of 18)	intron (NR_155458, intron 2 of 18)	38828.0	NM_053204	111173.0	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	20.19	5.79	19.4	22.93	10.64	24.15	20.59	16.93	17.7	9.04	23.62	13.47
Merged-chr15-76802118-3	chr15	76802011	76802211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	16059.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	35.94	32.45	37.08	46.66	27.41	31.04	22.59	34.43	23.41	19.08	30.15	12.22
Merged-chr3-88685397-3	chr3	88685291	88685491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-396.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	90.05	71.43	77.58	85.67	72.41	90.62	56.8	74.47	105.82	103.43	126.12	90.85
Merged-chr3-139064520-3	chr3	139064423	139064623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	10678.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	35.53	37.23	37.65	37.4	29.86	33.87	23.92	39.22	38.55	37.16	53.26	28.82
Merged-chr3-14893910-3	chr3	14893814	14894014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	7626.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	20.59	17.86	22.82	38.61	47.05	31.67	34.21	47.44	42.29	34.14	28.64	22.24
Merged-chr5-110421143-3	chr5	110421050	110421250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	27353.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	37.96	47.04	77.01	69.98	37.23	61.15	34.88	63.25	31.67	24.1	34.67	24.12
Merged-chr11-20231359-3	chr11	20231259	20231459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	18065.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	52.9	47.29	74.73	75.61	49.91	49.54	69.42	85.07	73.95	54.23	65.83	46.05
Merged-chr8-46887503-3	chr8	46887415	46887615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-99372.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	33.92	33.2	53.62	65.96	53.59	45.15	45.18	56.52	56.65	47.2	63.31	40.41
Merged-chr9-95566509-3	chr9	95566413	95566613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6696.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	19.38	11.57	8.56	16.89	16.36	15.68	17.94	20.75	20.65	20.08	34.17	14.1
Merged-chr9-77910742-3	chr9	77910657	77910857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6608.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	222.09	218.07	252.71	202.31	239.73	346.5	216.58	301.85	332.6	284.69	471.83	202.37
Merged-chr5-145231745-3	chr5	145231630	145231830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	5.0	NM_001347533	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	140.92	142.36	110.67	110.6	119.87	176.86	61.45	109.88	185.08	166.7	186.42	104.63
Merged-chr7-96546856-2	chr7	96546749	96546949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204885.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	34.32	19.87	47.92	26.14	31.09	14.11	12.29	38.83	5.11	5.02	9.04	7.83
Merged-chr15-88819464-3	chr15	88819339	88819539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-121.0	NM_145477	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	232.18	265.87	228.75	215.98	248.73	343.05	234.18	205.85	290.51	316.83	361.29	180.13
Merged-chr10-12842747-3	chr10	12842643	12842843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	18992.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	21.4	15.09	32.52	29.76	15.55	36.06	35.87	52.96	30.09	18.58	44.22	18.17
Merged-chr4-40845662-3	chr4	40845558	40845758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	4480.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	41.19	21.63	26.24	27.35	42.14	71.49	23.58	28.77	58.42	71.8	30.65	26.63
Merged-chr14-70599710-3	chr14	70599616	70599816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194345, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	119.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	41.99	61.12	54.19	47.46	54.41	81.22	70.09	53.33	45.43	51.72	62.81	40.72
Merged-chr2-168205445-3	chr2	168205344	168205544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310086, intron 1 of 4)	intron (NM_001310086, intron 1 of 4)	1668.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	44.42	37.48	41.07	32.18	42.55	61.15	35.54	35.02	54.68	53.22	89.44	28.51
Merged-chr1-36596248-2	chr1	36596142	36596342	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2910.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.81	0.0	1.14	0.0	14.73	14.42	15.28	32.75	20.46	26.61	32.66	17.54
Merged-chr17-34031691-3	chr17	34031605	34031805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-15.0	NM_008202	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	122.35	103.63	91.84	78.43	114.96	124.17	58.46	66.39	146.14	121.51	105.52	73.93
Merged-chr8-11249992-3	chr8	11249881	11250081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-62824.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	50.88	33.96	70.17	62.74	72.41	74.32	91.01	94.07	79.86	64.77	85.42	38.22
Merged-chr2-32587915-3	chr2	32587826	32588026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	848.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	34.73	35.47	35.94	26.95	46.64	41.08	29.9	43.23	56.45	49.71	72.36	37.28
Merged-chr8-14669611-3	chr8	14669542	14669742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-218894.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	27.86	32.2	47.92	68.78	63.41	76.2	56.8	85.18	54.88	57.24	88.94	42.92
Merged-chr5-142463924-3	chr5	142463825	142464025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172725)	promoter-TSS (NM_172725)	-6.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	97.72	80.99	97.55	88.08	92.87	117.59	62.12	62.8	106.6	111.97	116.07	83.96
Merged-chr19-16140807-3	chr19	16140705	16140905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7974.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	115.49	87.53	116.94	125.08	85.09	101.6	65.11	85.82	96.97	83.85	64.32	53.57
Merged-chr5-141081075-3	chr5	141080973	141081173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80477.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	42.8	43.51	35.94	32.58	60.55	48.29	27.24	35.86	51.34	62.76	80.4	34.77
Merged-chr19-36083727-3	chr19	36083627	36083827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	11.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	34.73	39.74	45.64	39.01	49.91	37.94	39.53	47.69	32.65	22.09	63.82	36.03
Merged-chr14-60738734-3	chr14	60738659	60738859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310594, intron 1 of 9)	L1MB2|LINE|L1	5855.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	31.09	30.69	28.52	34.59	40.5	26.03	21.59	40.04	36.58	25.61	29.65	26.63
Merged-chr4-15265699-3	chr4	15265618	15265818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-102.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	132.44	97.34	111.24	126.69	154.23	156.47	124.23	169.4	150.66	145.61	211.04	120.92
Merged-chr11-100702658-3	chr11	100702516	100702716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030150, intron 4 of 12)	B2_Mm2|SINE|B2	1655.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	31.9	30.94	18.83	24.13	54.0	77.14	33.88	27.22	74.74	72.3	36.68	50.44
Merged-chrX-38462293-3	chrX	38462202	38462402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5842.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	16.56	18.61	35.94	17.7	42.96	53.62	29.23	47.16	28.91	38.16	42.71	19.74
Merged-chr1-58445533-3	chr1	58445419	58445619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-33.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	32.3	28.67	48.49	43.04	26.59	36.06	35.87	63.14	46.42	39.67	52.26	28.19
Merged-chr4-34778397-3	chr4	34778310	34778510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330756)	promoter-TSS (NM_001330756)	-44.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	163.94	206.0	204.79	199.49	153.0	182.19	131.21	205.63	196.1	175.23	209.03	133.14
Merged-chr4-80311310-3	chr4	80311199	80311399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-522914.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	22.21	33.2	38.79	49.47	90.82	65.22	60.12	78.79	74.54	69.79	127.13	55.45
Merged-chr6-72037770-3	chr6	72037671	72037871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	4757.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	134.06	106.65	109.53	131.12	123.55	148.32	127.89	135.79	121.95	90.88	136.68	85.21
Merged-chr7-118482606-3	chr7	118482541	118482741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9334.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	48.05	40.75	61.04	52.69	63.0	52.99	39.53	71.55	36.78	41.67	44.22	30.7
Merged-chr8-126853228-3	chr8	126853116	126853316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4196.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	31.09	36.47	80.43	51.88	108.82	69.61	93.67	105.51	99.92	82.85	151.75	69.55
Merged-chr16-50760115-3	chr16	50759984	50760184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23325.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	37.15	43.01	77.01	42.23	40.91	33.87	55.47	66.62	40.52	23.6	61.3	23.18
Merged-chr10-80752383-3	chr10	80752277	80752477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2826.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	58.15	38.74	35.94	36.6	27.41	79.02	39.53	32.36	58.61	66.28	63.31	30.39
Merged-chr10-128566164-3	chr10	128566062	128566262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011119)	promoter-TSS (NM_011119)	-228.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	235.82	240.96	301.2	271.89	245.87	299.15	226.21	253.04	219.9	227.96	330.63	155.69
Merged-chr2-35496113-3	chr2	35496015	35496215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34666.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	45.63	33.45	48.49	51.88	45.0	32.3	32.22	43.6	40.32	39.16	43.21	28.51
Merged-chr3-8746852-3	chr3	8746766	8746966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79828.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	50.07	38.99	45.64	53.49	67.91	63.03	34.88	66.17	44.45	44.19	62.81	41.98
Merged-chr4-43259803-2	chr4	43259685	43259885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-7374.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	35.53	33.2	37.65	30.57	32.73	26.34	23.25	26.41	1.18	0.0	0.0	0.63
Merged-chr4-114934280-3	chr4	114934161	114934361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8248.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	37.55	33.96	26.81	35.39	28.64	31.04	25.58	44.27	50.55	49.71	65.83	51.69
Merged-chr4-9641160-3	chr4	9641055	9641255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2562.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	35.53	23.9	49.63	24.94	28.23	24.77	22.59	36.34	28.13	25.61	31.15	22.56
Merged-chr4-132962820-3	chr4	132962705	132962905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11290.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	34.32	37.98	39.93	40.22	35.59	42.65	26.24	33.25	47.01	51.21	58.29	22.87
Merged-chr4-63544726-3	chr4	63544627	63544827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-38.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	111.45	74.45	86.71	92.1	99.0	106.93	56.8	70.09	125.49	122.51	122.61	58.58
Merged-chr3-94975260-2	chr3	94975148	94975348	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293716, intron 1 of 9)	intron (NM_001293716, intron 1 of 9)	517.0	NM_001293716	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	10.9	10.82	17.11	6.84	16.36	19.44	10.96	9.93	19.47	19.08	24.62	17.54
Merged-chr6-34867824-3	chr6	34867746	34867946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	4700.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	31.09	29.93	45.64	24.13	56.05	53.62	41.85	53.27	44.65	31.63	29.14	24.43
Merged-chr16-57246764-3	chr16	57246661	57246861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15295.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	15.75	16.35	15.97	20.11	26.18	42.33	25.91	41.05	29.7	23.6	30.15	28.51
Merged-chr12-4154466-1	chr12	4154366	4154566	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	20313.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	1.62	4.53	5.7	2.41	4.91	1.57	10.96	10.54	1.97	3.51	0.5	2.51
Merged-chr10-34249762-3	chr10	34249647	34249847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-32443.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	76.32	50.31	86.71	58.32	86.73	106.93	59.13	73.04	79.46	83.85	95.97	40.72
Merged-chr6-114258919-3	chr6	114258834	114259034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23701.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	101.35	75.21	85.0	94.52	111.69	105.99	97.66	116.24	96.18	86.86	130.14	81.45
Merged-chr6-108529572-3	chr6	108529491	108529691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	39848.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	79.14	70.43	124.93	153.24	98.59	134.52	171.07	186.31	129.22	82.85	138.18	94.61
Merged-chr1-54557702-3	chr1	54557609	54557809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163314)	promoter-TSS (NM_001163314)	-25.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	32.71	39.49	51.34	34.99	57.68	43.27	29.56	40.96	58.42	49.21	52.26	33.52
Merged-chr14-54517539-3	chr14	54517445	54517645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013768)	promoter-TSS (NM_013768)	-75.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	222.9	205.0	232.18	255.8	253.24	302.91	218.24	266.08	319.81	321.85	389.42	209.89
Merged-chr7-128321360-3	chr7	128321269	128321469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23238.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	52.9	61.12	67.31	34.99	66.68	81.22	52.82	41.72	104.64	106.45	120.09	40.72
Merged-chr5-21189219-3	chr5	21189104	21189304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2937.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	150.62	131.8	152.31	150.02	171.82	209.78	143.83	151.07	129.03	158.67	121.6	60.15
Merged-chrX-75127053-3	chrX	75126949	75127149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008621, intron 1 of 11)	intron (NM_008621, intron 1 of 11)	3967.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	35.13	35.72	27.38	31.37	36.0	45.78	38.53	33.22	45.43	44.19	27.64	24.12
Merged-chr12-80852212-3	chr12	80852101	80852301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	61669.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	37.55	18.61	34.8	42.23	27.41	30.42	37.54	53.78	27.73	35.65	38.69	32.58
Merged-chr2-131086842-3	chr2	131086737	131086937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-72.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	27.46	24.65	25.67	25.34	29.46	29.16	24.91	29.13	24.78	30.13	47.74	20.05
Merged-chr6-87810933-3	chr6	87810828	87811028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	851.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	86.41	118.47	122.65	122.67	70.77	91.88	43.51	75.59	124.5	115.99	127.63	81.76
Merged-chr6-127266206-3	chr6	127266120	127266320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41747.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	90.85	82.0	83.86	131.12	73.23	62.4	55.8	107.75	86.35	64.77	92.96	57.33
Merged-chr8-83748818-3	chr8	83748751	83748951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7540.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	178.88	145.13	206.51	180.99	178.78	199.43	121.24	171.17	185.48	187.79	207.53	105.57
Merged-chr5-66067342-3	chr5	66067251	66067451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30828.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	48.46	45.02	53.05	89.69	67.5	54.56	97.99	113.86	80.64	92.39	90.45	82.7
Merged-chr2-145903284-3	chr2	145903194	145903394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141965)	promoter-TSS (NM_001141965)	53.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	61.38	71.69	53.62	65.16	60.55	73.06	73.08	59.27	60.38	72.81	80.4	57.64
Merged-chr9-48494521-3	chr9	48494419	48494619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004191)	promoter-TSS (NM_001004191)	811.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	49.67	48.54	34.23	24.94	56.87	62.09	33.22	30.95	36.78	24.1	23.11	13.78
Merged-chr4-88760638-2	chr4	88760531	88760731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085531)	promoter-TSS (NM_001085531)	-143.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	89.24	96.08	67.88	113.02	0.0	0.0	0.0	0.0	46.03	48.7	60.3	37.91
Merged-chr1-6214708-3	chr1	6214627	6214827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009826)	promoter-TSS (NM_009826)	65.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	54.51	83.51	48.49	81.65	69.96	61.15	86.03	82.04	62.35	70.29	83.91	53.57
Merged-chr13-74494016-3	chr13	74493963	74494163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-113.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	49.67	32.45	66.74	69.98	59.73	47.04	57.8	58.57	53.89	45.69	85.92	53.26
Merged-chr10-60733921-3	chr10	60733805	60734005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18877.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	25.84	19.87	29.09	35.39	31.09	29.16	33.88	62.19	27.14	28.12	48.24	20.68
Merged-chrX-101451334-3	chrX	101451241	101451441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013712, intron 4 of 10)	intron (NM_013712, intron 4 of 10)	2232.0	NM_013712	26549.0	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	62.59	59.11	77.58	49.47	84.28	93.76	44.51	59.13	80.25	69.79	90.95	31.33
Merged-chr11-120142796-3	chr11	120142695	120142895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361697, intron 1 of 15)	intron (NM_001361697, intron 1 of 15)	8556.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	76.72	65.15	88.99	103.37	74.46	89.37	93.34	87.42	82.61	66.78	82.91	52.94
Merged-chr1-23433806-3	chr1	23433704	23433904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-50629.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	122.75	115.45	115.23	162.09	117.41	136.09	103.31	140.5	158.14	143.6	187.93	95.23
Merged-chr11-70221051-4	chr11	70220936	70221136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-42.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	23.42	37.73	26.24	22.12	42.96	46.72	28.9	18.98	36.39	34.14	32.16	28.51
Merged-chr10-77540858-3	chr10	77540762	77540962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	10514.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	16.56	18.61	27.38	23.73	24.55	19.44	29.9	47.47	20.26	19.58	35.17	14.1
Merged-chr11-117138340-3	chr11	117138251	117138451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	23179.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	35.53	20.63	26.24	43.44	40.91	26.97	22.26	38.94	29.7	18.58	24.12	17.86
Merged-chr12-102365262-3	chr12	102365167	102365367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	74546.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	69.05	63.39	94.7	67.17	93.68	94.7	75.07	92.86	104.44	65.78	98.99	69.86
Merged-chr14-70927626-3	chr14	70927527	70927727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37520.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	37.96	23.14	34.23	33.78	38.86	29.79	34.55	52.54	61.17	33.64	53.26	32.27
Merged-chr10-94688630-3	chr10	94688520	94688720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	-7.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	86.01	94.57	104.39	93.31	108.0	128.25	69.76	106.51	128.24	134.56	170.84	72.68
Merged-chr6-83455486-3	chr6	83455377	83455577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347313, exon 2 of 12)	5' UTR (NM_001347313, exon 2 of 12)	915.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	37.96	37.23	50.2	36.6	58.09	50.17	28.23	42.62	58.81	59.25	55.27	41.66
Merged-chr16-11455926-3	chr16	11455828	11456028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50280.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	24.63	29.18	26.81	30.16	52.37	38.88	41.85	62.08	54.09	72.3	73.36	36.97
Merged-chr6-13678070-3	chr6	13677961	13678161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-95.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	217.24	185.38	210.5	210.35	247.1	251.49	220.23	306.28	259.82	247.04	354.75	159.45
Merged-chr12-71048342-3	chr12	71048256	71048456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	32389.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	27.86	26.41	27.95	46.66	44.59	47.66	28.57	46.93	52.12	35.65	49.75	23.81
Merged-chr1-36987312-3	chr1	36987210	36987410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M7|LINE|L1	-47783.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	49.26	52.07	63.32	26.95	36.0	62.71	24.91	31.6	48.58	43.68	60.3	20.36
Merged-chr9-56161000-3	chr9	56160876	56161076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019793)	promoter-TSS (NM_019793)	94.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	27.05	37.73	31.38	41.83	37.64	39.82	45.84	51.34	32.85	29.12	45.22	23.49
Merged-chr5-151195531-3	chr5	151195445	151195645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5352.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.65	16.85	19.4	22.93	18.82	17.87	18.93	27.87	36.19	30.63	39.19	19.42
Merged-chr14-55092463-3	chr14	55092378	55092578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039198)	promoter-TSS (NM_001039198)	-430.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	35.13	13.58	26.24	21.72	29.46	39.51	11.63	24.34	38.16	38.66	41.71	15.04
Merged-chr2-132265395-3	chr2	132265300	132265500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	2252.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	31.09	27.67	36.51	24.94	26.59	30.42	24.58	41.86	58.42	42.18	60.3	34.46
Merged-chr11-46834374-3	chr11	46834270	46834470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	23571.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	14.94	25.15	21.11	22.12	23.73	14.74	15.61	16.6	23.21	17.57	25.12	18.48
Merged-chr17-84107690-3	chr17	84107604	84107804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29044.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	32.3	26.16	33.66	27.35	60.14	47.98	21.26	25.93	47.8	53.22	52.26	25.06
Merged-chr2-70825714-3	chr2	70825630	70825830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172664)	promoter-TSS (NM_172664)	-250.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	37.55	51.81	44.5	41.43	33.14	60.83	37.2	34.68	44.84	35.15	31.66	30.39
Merged-chr7-34189555-3	chr7	34189451	34189651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026549, intron 4 of 6)	intron (NM_026549, intron 4 of 6)	7119.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	45.23	36.72	62.75	79.23	49.91	66.16	54.48	102.87	54.88	45.19	114.57	41.98
Merged-chr6-39526999-3	chr6	39526909	39527109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30825.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	55.72	43.01	34.23	49.87	59.73	71.81	35.54	79.35	78.87	68.79	90.95	61.09
Merged-chr9-85328534-3	chr9	85328455	85328655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1405.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	39.17	40.5	30.8	43.84	36.0	47.98	24.58	48.45	62.15	62.26	60.3	38.22
Merged-chr8-104340325-3	chr8	104340242	104340442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024217)	promoter-TSS (NM_024217)	-252.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	73.09	48.8	116.94	116.24	67.5	60.83	91.68	119.86	99.92	67.28	162.3	77.38
Merged-chr18-53862017-3	chr18	53861896	53862096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-117.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	138.91	81.75	142.61	131.92	111.28	129.51	87.69	121.21	129.03	144.61	166.82	67.35
Merged-chr6-125252435-3	chr6	125252323	125252523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13102.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	44.01	31.44	49.63	41.83	75.28	56.13	71.42	89.83	71.4	46.19	85.92	50.75
Merged-chr17-84181720-3	chr17	84181636	84181836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	6211.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	54.92	45.78	41.07	47.06	48.68	48.92	38.2	38.86	38.16	44.69	35.17	27.88
Merged-chr5-109559026-3	chr5	109558901	109559101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016715)	promoter-TSS (NM_016715)	-8.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	64.61	48.04	51.91	67.57	56.87	53.31	39.2	53.83	102.28	117.49	146.72	78.63
Merged-chr11-69581522-3	chr11	69581453	69581653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127233, intron 1 of 10)	CpG	1194.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	53.7	43.26	50.77	48.26	54.41	63.66	37.2	42.84	62.15	62.76	55.78	43.54
Merged-chr15-103370627-3	chr15	103370513	103370713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3822.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	192.21	188.14	143.76	91.3	165.28	268.42	134.53	113.52	204.75	253.56	226.62	102.75
Merged-chrX-12673636-3	chrX	12673535	12673735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175141)	promoter-TSS (NM_175141)	4.0	NM_175141	69155.0	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	44.42	39.24	38.22	53.09	77.32	77.77	42.85	69.31	62.94	81.34	117.08	34.46
Merged-chr15-85832298-3	chr15	85832246	85832446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033337)	promoter-TSS (NM_001033337)	42.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	28.67	22.39	21.68	24.53	36.0	31.67	28.9	32.83	26.36	24.6	47.23	24.43
Merged-chr1-192092591-3	chr1	192092502	192092702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	-3.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	93.68	84.51	78.72	75.21	76.09	101.28	60.12	75.67	103.46	118.5	131.15	40.41
Merged-chr7-135655344-3	chr7	135655236	135655436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-3022.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	92.07	71.69	102.11	115.03	82.64	91.56	87.03	127.46	100.51	85.36	124.11	78.94
Merged-chr8-104341444-3	chr8	104341315	104341515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	821.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	71.07	55.59	74.73	75.21	79.78	63.03	84.37	84.65	91.07	68.29	97.98	71.11
Merged-chr8-8239693-3	chr8	8239595	8239795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	421078.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	33.52	38.74	34.8	51.08	46.64	53.31	42.85	91.63	67.07	64.77	106.02	43.86
Merged-chr10-82241288-3	chr10	82241152	82241352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001105557)	promoter-TSS (NM_001105557)	23.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	26.65	19.37	22.25	32.58	18.41	21.32	28.23	27.2	32.65	24.1	48.24	21.93
Merged-chr19-12585482-3	chr19	12585379	12585579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015503)	TTS (NR_015503)	11087.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	56.94	54.58	46.21	64.75	72.0	52.37	47.5	51.22	52.12	79.33	58.79	44.17
Merged-chr8-128558167-2	chr8	128558070	128558270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127484.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	37.96	23.64	25.67	24.53	23.32	31.36	19.27	34.01	6.69	1.51	8.54	3.13
Merged-chr7-106551088-1	chr7	106550988	106551188	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93557.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	17.36	12.07	31.95	16.49	22.09	27.28	13.29	22.51	2.56	0.5	6.03	6.89
Merged-chr10-86885910-3	chr10	86885805	86886005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	106900.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	88.43	57.85	128.35	71.59	62.59	74.63	81.05	120.56	112.31	91.38	146.22	70.48
Merged-chr18-77773639-2	chr18	77773520	77773720	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007505)	promoter-TSS (NM_007505)	1.0	NM_001357533	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	10.09	14.34	15.97	18.5	21.68	31.67	22.92	19.82	16.52	26.11	27.13	23.81
Merged-chr17-56134743-3	chr17	56134634	56134834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-882.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	16.96	22.39	25.1	21.32	22.91	14.42	27.57	14.52	17.51	24.6	29.14	18.8
Merged-chr13-4771643-3	chr13	4771525	4771725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162461.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	165.56	162.24	150.03	224.43	256.92	244.59	198.31	277.54	342.63	353.98	425.1	214.27
Merged-chr11-113751854-3	chr11	113751758	113751958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	-43.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	46.84	57.6	58.19	47.06	43.36	60.52	29.9	47.72	66.68	63.27	84.92	40.72
Merged-chr16-85072808-3	chr16	85072689	85072889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100578.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	45.63	39.99	33.66	51.48	42.14	50.8	37.54	77.5	59.79	58.75	74.37	40.41
Merged-chr6-59185478-3	chr6	59185376	59185576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23394.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	76.32	80.49	90.13	99.75	128.46	97.83	107.62	154.85	139.65	133.56	156.77	75.18
Merged-chr13-37958750-3	chr13	37958647	37958847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	35461.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	108.62	115.45	135.77	142.38	128.87	117.59	89.35	134.41	97.36	80.34	149.24	61.4
Merged-chr15-35757235-3	chr15	35757126	35757326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 35 of 61)	intron (NM_177151, intron 35 of 61)	-96179.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	46.03	35.21	80.43	84.86	67.09	62.4	92.68	134.1	50.35	44.69	103.01	37.28
Merged-chr11-86807662-3	chr11	86807551	86807751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	9.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	36.75	43.51	46.78	22.12	33.96	33.87	19.93	23.3	53.3	48.7	48.24	42.6
Merged-chr1-183345493-3	chr1	183345381	183345581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177389, intron 6 of 26)	CpG	24084.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	98.93	69.42	73.59	66.77	92.46	92.5	54.81	80.58	124.11	100.92	184.41	97.43
Merged-chr19-3687854-3	chr19	3687757	3687957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1293.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	164.75	153.94	143.76	176.97	171.82	136.72	169.74	137.08	156.37	190.3	254.76	135.02
Merged-chr7-126595046-3	chr7	126594970	126595170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145636)	promoter-TSS (NM_145636)	-160.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	18.57	18.11	46.21	20.51	17.59	21.32	16.61	22.09	29.31	34.14	28.14	13.47
Merged-chr1-167331319-3	chr1	167331172	167331372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-18719.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	47.65	45.78	74.16	62.74	60.55	73.06	46.84	71.92	73.36	61.76	68.34	40.72
Merged-chr3-145924132-3	chr3	145924034	145924234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-128.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	439.33	413.51	479.18	487.06	501.56	576.66	515.86	547.4	584.36	599.51	845.68	354.62
Merged-chr3-153944648-3	chr3	153944576	153944776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007382)	promoter-TSS (NM_007382)	-33.0	NM_007382	11364.0	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	183.32	174.81	154.59	217.99	199.23	238.63	215.58	234.73	237.99	250.55	344.7	170.73
Merged-chr2-33468583-3	chr2	33468483	33468683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027947)	promoter-TSS (NM_027947)	-51.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	70.66	49.55	77.58	70.38	56.87	60.21	39.53	45.53	80.45	84.35	73.86	53.88
Merged-chr17-79662056-3	chr17	79661948	79662148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	47148.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	16.56	31.69	37.08	29.36	43.36	37.32	33.22	56.83	37.17	31.63	46.23	38.85
Merged-chr13-102886371-3	chr13	102886259	102886459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126104.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	43.21	38.23	82.15	62.74	40.91	43.27	20.93	55.91	49.57	39.16	42.21	37.91
Merged-chr1-107381646-3	chr1	107381542	107381742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	19328.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	15.75	12.07	15.4	17.7	30.68	28.22	29.9	34.6	30.49	18.58	22.61	13.78
Merged-chr10-53888861-3	chr10	53888701	53888901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137892.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	17.36	18.11	9.13	17.29	21.68	21.01	20.93	21.11	19.47	19.58	19.6	24.75
Merged-chr9-78482564-2	chr9	78482461	78482661	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-837.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.63	6.54	9.13	14.88	19.23	21.32	13.95	20.72	11.21	20.59	23.62	21.3
Merged-chr5-143528108-3	chr5	143528005	143528205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009007)	promoter-TSS (NM_009007)	-74.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	88.84	65.15	81.0	54.7	60.14	73.06	55.47	60.03	105.23	99.92	106.02	53.26
Merged-chr18-37880350-3	chr18	37880246	37880446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-25686.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	43.61	34.71	37.08	37.4	34.36	39.2	16.61	37.12	53.7	52.72	62.31	28.19
Merged-chr17-29500790-1	chr17	29500690	29500890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9745.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	9.69	14.09	4.56	2.41	2.45	6.27	0.33	0.0	3.34	9.54	2.01	3.13
Merged-chr10-51526318-3	chr10	51526214	51526414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS2|LTR|ERV1	35416.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	85.2	93.82	68.45	84.46	100.64	150.51	85.7	95.22	155.78	139.08	151.75	98.99
Merged-chr17-57341752-3	chr17	57341659	57341859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16927.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	61.78	44.77	77.01	57.11	53.59	35.75	54.48	70.82	63.73	34.14	73.36	48.56
Merged-chr15-99259689-1	chr15	99259589	99259789	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-7728.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	14.94	11.57	14.83	11.66	15.96	21.01	7.64	12.31	14.75	19.58	17.59	9.71
Merged-chrX-162829512-3	chrX	162829402	162829602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178935)	promoter-TSS (NM_178935)	-48.0	NM_001290778	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	123.97	141.36	158.02	159.27	182.05	211.03	159.77	198.62	165.02	185.78	254.26	154.75
Merged-chr11-62648488-1	chr11	62648388	62648588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	35.0	NM_198861	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	13.33	12.58	5.13	18.1	13.5	19.13	9.63	11.44	17.51	12.05	22.61	8.14
Merged-chr1-60343344-3	chr1	60343266	60343466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313721)	promoter-TSS (NM_001313721)	66.0	NM_001313721	77951.0	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	66.63	79.23	76.44	94.11	76.91	90.62	95.0	69.39	90.28	81.84	153.26	76.12
Merged-chr17-24736523-3	chr17	24736423	24736623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-70.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	122.35	112.43	149.46	126.69	163.23	218.25	110.95	119.13	168.56	174.73	227.62	97.74
Merged-chr4-11007806-3	chr4	11007711	11007911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-192.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	157.48	172.8	187.68	174.96	169.78	242.08	184.69	186.65	258.45	238.0	319.08	120.61
Merged-chr10-43541019-3	chr10	43540935	43541135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026411)	promoter-TSS (NM_026411)	-17.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	76.32	68.42	79.29	70.79	91.23	90.94	78.72	91.49	98.15	83.35	155.77	60.15
Merged-chr2-132114707-3	chr2	132114610	132114810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	30398.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	60.97	59.86	63.89	60.33	42.55	47.35	48.83	64.68	75.13	55.73	55.27	42.6
Merged-chr1-92910717-3	chr1	92910617	92910817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	-28.0	NR_138577	75995.0	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	23.02	18.11	26.81	20.51	30.27	28.22	23.92	38.75	33.24	22.09	59.29	21.3
Merged-chr15-79409477-3	chr15	79409383	79409583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6180.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	30.69	34.46	43.35	38.61	38.46	40.14	37.2	41.72	48.58	36.15	60.3	39.78
Merged-chr12-3868276-3	chr12	3868193	3868393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6049.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	58.15	42.76	79.86	57.51	64.64	71.81	63.78	80.33	81.23	60.25	63.31	46.05
Merged-chr8-115307639-3	chr8	115307537	115307737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	399257.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	26.65	30.43	12.55	24.53	29.86	50.8	19.6	12.98	30.68	44.19	29.14	17.86
Merged-chr10-39418555-3	chr10	39418444	39418644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48745.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	27.86	10.82	51.34	33.78	41.32	23.52	59.79	102.22	52.12	29.62	54.77	35.4
Merged-chr4-134287322-3	chr4	134287223	134287423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-70.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	102.97	96.84	96.41	77.62	90.41	100.34	74.74	85.04	96.38	116.99	132.15	72.99
Merged-chr4-55530333-3	chr4	55530239	55530439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2136.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	67.43	58.61	77.58	76.42	79.78	71.49	58.13	96.42	85.56	62.76	107.53	65.16
Merged-chr7-45457487-3	chr7	45457372	45457572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010240)	TTS (NM_010240)	2414.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	125.58	92.06	148.89	108.59	120.69	141.42	170.07	160.54	149.68	117.99	253.25	120.29
Merged-chr12-85110855-3	chr12	85110754	85110954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	21.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	33.11	39.49	45.07	22.12	40.09	46.72	29.23	38.44	59.2	48.2	64.82	38.22
Merged-chr8-56299602-3	chr8	56299520	56299720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	5068.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	69.86	72.94	77.58	125.89	74.87	45.15	40.52	78.53	71.4	69.29	90.45	45.74
Merged-chr13-54468851-3	chr13	54468768	54468968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028597)	promoter-TSS (NM_028597)	-28.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	73.89	33.7	72.45	44.24	58.09	52.68	19.6	57.08	82.81	80.84	79.39	62.97
Merged-chr3-105717000-3	chr3	105716899	105717099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175398, exon 2 of 2)	exon (NM_175398, exon 2 of 2)	11541.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	64.61	75.46	96.98	82.05	65.87	100.66	81.71	100.54	75.33	76.32	84.42	67.67
Merged-chr12-84192513-3	chr12	84192475	84192675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1440.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	21.0	18.36	21.68	28.96	16.77	21.95	23.25	23.13	25.77	28.12	19.6	13.47
Merged-chr16-31200517-3	chr16	31200423	31200623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	CpG	715.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	27.86	22.13	21.11	24.53	30.68	25.71	24.25	30.59	21.64	21.09	35.68	24.75
Merged-chr13-77708685-3	chr13	77708587	77708787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163419)	promoter-TSS (NM_001163419)	-3.0	NM_001163420	68675.0	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	46.84	55.84	51.91	57.92	77.32	68.36	50.16	67.01	102.28	72.81	111.05	64.85
Merged-chr4-148656163-3	chr4	148656029	148656229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	12812.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	31.5	36.47	34.8	26.55	30.68	44.21	38.53	18.95	48.98	55.73	79.89	35.4
Merged-chr1-64303072-3	chr1	64302983	64303183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181694.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	81.16	88.79	72.45	62.34	70.77	100.03	68.76	59.08	105.62	94.9	95.47	45.42
Merged-chr1-161251250-3	chr1	161251142	161251342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-32.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	52.9	59.11	43.35	39.42	38.46	56.76	32.88	78.48	78.09	85.36	81.9	33.52
Merged-chr5-115134925-3	chr5	115134813	115135013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175352)	promoter-TSS (NM_175352)	62.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	32.3	45.78	35.94	44.64	46.64	51.43	28.23	28.57	44.84	40.17	67.84	24.43
Merged-chr6-113654285-3	chr6	113654166	113654366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	15799.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	101.76	80.99	135.2	92.1	132.96	163.69	112.27	96.76	131.39	134.06	191.45	59.52
Merged-chr1-79761764-3	chr1	79761659	79761859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	10.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	52.49	53.83	69.03	86.47	84.28	88.74	63.11	90.59	115.85	116.99	140.19	50.44
Merged-chr4-88693640-3	chr4	88693546	88693746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2378.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	29.48	28.42	35.94	41.43	29.46	22.26	30.56	24.48	38.94	18.58	29.14	20.05
Merged-chr17-5935957-1	chr17	5935857	5936057	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-5323.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.04	3.02	8.56	4.42	14.32	6.27	10.96	5.33	6.1	3.51	4.02	5.95
Merged-chr17-5936435-3	chr17	5936352	5936552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4828.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	90.85	56.85	102.11	81.24	81.0	99.72	99.98	103.46	96.38	66.78	125.62	55.45
Merged-chr9-79759796-3	chr9	79759714	79759914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	39.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	119.93	130.79	176.27	164.1	135.41	157.1	133.2	171.95	175.45	149.13	261.29	104.0
Merged-chr9-64914786-3	chr9	64914683	64914883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 34 of 34)	intron (NM_001162917, intron 34 of 34)	36824.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	41.19	55.08	63.89	24.13	33.96	35.75	23.25	18.64	44.25	19.08	27.13	26.63
Merged-chr1-84240367-3	chr1	84240265	84240465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-21404.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	25.04	24.15	45.07	34.99	29.46	24.15	20.59	39.81	31.47	23.6	27.64	16.6
Merged-chr10-80387805-3	chr10	80387720	80387920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-169.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	39.98	29.43	25.67	20.51	27.41	40.14	18.27	26.27	45.24	48.2	29.65	25.06
Merged-chr3-88336350-3	chr3	88336258	88336458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	98.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	56.94	92.31	54.76	81.65	61.37	94.39	81.71	55.79	67.66	89.88	80.4	68.61
Merged-chr6-24645524-3	chr6	24645434	24645634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	19461.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	62.18	50.31	62.75	55.91	68.32	61.77	52.48	60.73	52.91	51.21	61.3	35.09
Merged-chr10-51480563-3	chr10	51480463	51480663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-49.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	50.47	51.81	57.62	71.59	83.05	110.38	46.17	39.14	84.77	103.43	97.48	50.12
Merged-chr12-8521608-3	chr12	8521518	8521718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17948.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	202.3	173.81	221.91	242.93	216.01	244.59	209.93	260.3	232.49	282.18	275.86	151.62
Merged-chr6-97439139-3	chr6	97439048	97439248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	20138.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	35.53	38.23	51.91	45.85	58.91	56.13	55.8	85.15	63.73	51.21	67.84	39.78
Merged-chr2-91096729-3	chr2	91096643	91096843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	65.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	88.03	86.27	108.39	82.85	103.91	132.01	98.65	106.49	131.39	90.38	126.63	72.99
Merged-chr9-7871864-3	chr9	7871764	7871964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1306.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	46.84	50.05	59.33	35.39	57.27	61.46	59.79	47.66	109.36	70.29	91.95	33.21
Merged-chr8-25108936-3	chr8	25108855	25109055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	6776.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	52.9	40.75	43.93	31.37	45.41	39.51	22.59	32.47	45.24	58.24	25.12	18.8
Merged-chr16-35363904-3	chr16	35363798	35363998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133704)	promoter-TSS (NM_133704)	20.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	93.68	99.35	102.11	94.52	141.96	136.09	74.07	106.96	170.14	149.63	154.26	75.81
Merged-chr14-49172090-3	chr14	49171968	49172168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	118.31	92.56	106.1	85.67	129.69	142.36	85.04	138.03	141.62	115.99	192.95	93.35
Merged-chr5-109923561-3	chr5	109923441	109923641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10022.0	NR_040366	100642166.0		NR_040366	ENSMUSG00000090015	Gm15446	-	predicted gene 15446	ncRNA	34.32	43.01	51.91	93.71	55.23	47.66	70.09	40.04	48.58	45.69	71.35	33.52
Merged-chr17-55879032-3	chr17	55878956	55879156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144546)	promoter-TSS (NM_144546)	-103.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	58.55	61.62	71.31	65.16	72.41	65.22	52.48	46.21	69.82	77.83	114.57	65.79
Merged-chr18-12926606-1	chr18	12926506	12926706	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15235.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	6.06	3.02	1.14	1.61	4.09	8.15	0.33	12.34	3.54	4.52	8.54	5.01
Merged-chr14-75845204-3	chr14	75845128	75845328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	-28.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	241.87	227.63	265.83	208.74	255.28	360.3	252.12	327.79	362.3	412.23	526.1	232.76
Merged-chr18-11939830-1	chr18	11939730	11939930	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022021, intron 7 of 8)	intron (NM_022021, intron 7 of 8)	-99392.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	1.62	2.77	7.42	4.42	15.14	6.59	15.94	32.83	3.15	0.5	4.52	2.19
Merged-chr7-127935511-3	chr7	127935401	127935601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319147, intron 10 of 14)	CpG	-5388.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	95.3	98.85	120.37	101.35	121.5	143.93	103.97	106.26	112.9	120.0	172.85	97.11
Merged-chr8-117198328-3	chr8	117198238	117198438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	40203.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	194.63	173.55	234.46	149.62	244.23	258.38	178.38	202.57	216.55	199.84	221.59	128.75
Merged-chr17-22866501-3	chr17	22866390	22866590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	644.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	21.4	26.91	19.97	30.97	30.68	29.79	13.95	34.43	52.91	29.12	33.16	14.1
Merged-chr10-18023030-3	chr10	18022912	18023112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359560)	promoter-TSS (NM_001359560)	78.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	69.05	85.27	94.13	76.82	99.0	113.83	132.2	81.48	85.95	143.6	99.99	79.57
Merged-chr4-136020829-3	chr4	136020729	136020929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	820.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	24.63	14.09	26.24	23.73	25.36	24.77	21.26	33.56	24.78	28.62	27.13	26.94
Merged-chr17-25773725-3	chr17	25773634	25773834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026238)	promoter-TSS (NM_026238)	-42.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	32.3	41.0	35.94	43.44	42.96	37.63	27.24	34.15	86.74	57.74	49.75	46.36
Merged-chr12-85437745-3	chr12	85437649	85437849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36141.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	62.59	50.31	40.5	55.5	55.64	70.55	35.21	55.07	91.46	68.79	77.38	56.07
Merged-chr9-90235012-3	chr9	90234907	90235107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35762.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	23.82	12.32	20.54	15.28	14.32	46.41	26.91	32.47	39.93	31.13	51.25	19.42
Merged-chr16-32171161-3	chr16	32171046	32171246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5552.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	76.32	86.02	86.71	64.75	92.87	122.29	69.76	75.22	105.23	91.89	113.06	60.46
Merged-chr8-69209015-3	chr8	69208923	69209123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013379)	promoter-TSS (NM_001013379)	-23.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	55.32	36.47	80.43	54.7	62.59	78.08	47.83	75.98	78.28	90.88	97.98	50.44
Merged-chr12-70968637-3	chr12	70968538	70968738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5985.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	58.95	37.98	33.09	54.7	63.0	53.31	40.52	47.41	63.33	71.8	55.78	34.46
Merged-chr1-75124944-4	chr1	75124885	75125085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_194333)	TTS (NM_194333)	8905.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	56.53	46.78	60.47	61.13	61.77	66.48	33.88	56.75	92.25	95.9	131.15	57.33
Merged-chr9-21616554-2	chr9	21616441	21616641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357764, intron 1 of 34)	CpG	372.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	16.56	23.9	29.09	20.51	28.64	34.49	17.61	22.32	40.32	37.66	31.15	21.62
Merged-chr14-12284231-3	chr14	12284136	12284336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	33.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	14.94	13.33	22.25	19.31	18.41	16.93	22.26	18.53	24.19	23.1	42.71	27.25
Merged-chr1-180587970-3	chr1	180587855	180588055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105869)	TTS (NR_105869)	754.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	54.92	36.22	45.64	40.22	70.77	63.34	47.17	58.85	50.35	51.21	61.81	37.59
Merged-chr13-51100997-3	chr13	51100896	51101096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	116.0	NM_146043	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	56.53	57.1	42.21	54.3	38.05	39.82	33.88	37.21	47.99	52.72	49.24	34.15
Merged-chr11-114907814-3	chr11	114907733	114907933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17792.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	92.47	61.88	138.62	116.64	143.6	131.07	86.7	132.08	127.45	119.5	144.21	84.27
Merged-chr5-103753574-3	chr5	103753465	103753665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	-597.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	111.85	85.27	88.99	89.29	80.18	124.49	74.41	81.06	137.68	122.01	121.1	59.52
Merged-chr12-33433977-3	chr12	33433860	33434060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172253, intron 2 of 3)	intron (NM_172253, intron 2 of 3)	4336.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	53.7	44.77	46.78	44.24	54.0	77.45	64.11	57.03	50.35	43.68	54.27	35.71
Merged-chr11-115161916-4	chr11	115161834	115162034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-1407.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	17.77	15.85	18.83	22.12	9.41	21.01	26.24	17.83	21.83	21.59	27.64	11.9
Merged-chr16-31066933-3	chr16	31066824	31067024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	14508.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	26.25	21.13	18.83	24.53	27.41	39.82	19.93	19.85	42.29	41.67	53.77	25.69
Merged-chr5-4853738-1	chr5	4853638	4853838	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-95522.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.81	0.5	2.28	0.0	1.23	1.57	7.31	11.05	0.59	2.51	3.01	0.31
Merged-chr8-72317817-3	chr8	72317702	72317902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1260.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	27.05	22.39	82.72	61.54	60.55	48.92	79.39	85.43	71.4	52.72	75.87	40.72
Merged-chr7-135699451-3	chr7	135699362	135699562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	16917.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	41.99	57.85	56.48	22.12	38.86	63.34	41.85	11.78	76.71	60.25	56.78	14.72
Merged-chr4_GL456216_random-13910-1	chr4_GL456216_random	13810	14010	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9E|LTR|ERVK	-1971.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	81.23	58.75	102.51	36.34
Merged-chr6-54816637-3	chr6	54816509	54816709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199143)	promoter-TSS (NM_199143)	-307.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	161.11	176.82	147.75	145.6	203.32	173.41	130.54	168.95	178.79	160.17	277.87	114.34
Merged-chr5-135994843-3	chr5	135994733	135994933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023742)	promoter-TSS (NM_023742)	33.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	28.27	39.49	23.39	24.53	32.32	47.98	22.26	31.46	42.09	37.16	63.31	20.99
Merged-chr11-117993692-3	chr11	117993587	117993787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	6830.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	40.78	27.67	26.24	45.85	37.64	37.94	23.58	18.64	35.6	35.15	33.67	16.92
Merged-chr1-151599048-3	chr1	151598934	151599134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	27661.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	25.84	15.09	23.39	27.75	40.5	31.98	14.28	33.87	34.62	32.64	23.62	18.8
Merged-chr8-13338674-3	chr8	13338585	13338785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291766)	promoter-TSS (NM_001291766)	-66.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	50.07	58.86	66.74	48.67	65.46	105.36	58.79	76.51	90.67	104.94	131.15	49.18
Merged-chr3-153912977-3	chr3	153912888	153913088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163478)	promoter-TSS (NM_001163478)	-22.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	111.45	104.64	132.35	105.78	133.78	150.83	138.18	138.53	178.0	215.4	212.05	131.26
Merged-chr13-92483532-3	chr13	92483429	92483629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163627, intron 1 of 5)	B2_Mm2|SINE|B2	502.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	22.61	33.96	30.8	27.75	33.96	33.55	18.27	28.23	57.04	53.22	65.32	42.92
Merged-chr16-38711406-3	chr16	38711296	38711496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	1639.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	51.69	50.81	63.89	51.48	55.23	107.24	36.21	63.36	51.34	66.28	72.86	27.88
Merged-chr9-54586409-3	chr9	54586308	54586508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029573)	promoter-TSS (NM_029573)	-103.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	172.02	151.92	149.46	162.49	178.37	225.46	142.5	184.49	188.03	173.23	271.34	111.84
Merged-chr19-7494906-1	chr19	7494806	7495006	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	CpG	468.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	16.56	17.1	9.13	8.85	6.55	14.74	8.64	8.8	10.82	16.07	24.62	10.34
Merged-chr15-99973211-2	chr15	99973111	99973311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	76.0	NR_028124	70281.0	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	28.27	33.2	30.8	28.56	29.46	31.67	36.21	25.96	30.49	37.16	37.69	23.18
Merged-chr5-113114362-2	chr5	113114265	113114465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	24220.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	48.05	37.73	37.08	40.62	23.32	17.87	11.63	23.69	2.36	2.01	2.01	2.82
Merged-chr17-33978906-3	chr17	33978808	33979008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-117.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	331.11	324.72	369.09	279.93	348.56	428.65	299.29	281.95	368.79	376.08	447.21	248.73
Merged-chr13-23563336-3	chr13	23563284	23563484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1019.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	18.98	13.58	8.56	15.28	13.5	21.32	10.3	14.89	22.42	21.59	25.63	18.17
Merged-chr18-38250390-3	chr18	38250336	38250536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	129.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	51.69	76.46	61.04	98.94	66.68	75.57	99.32	68.55	52.91	92.89	92.96	56.39
Merged-chr17-21679918-3	chr17	21679846	21680046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	69.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	115.49	67.16	100.97	88.48	133.78	149.89	96.99	98.64	156.37	166.2	236.17	118.73
Merged-chr6-13601777-3	chr6	13601673	13601873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	6325.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	104.58	99.86	134.06	151.23	114.14	128.56	84.04	113.02	104.83	99.92	85.42	53.57
Merged-chr11-50213180-3	chr11	50213083	50213283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2363.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	130.83	104.64	79.86	51.08	103.91	143.62	70.42	67.96	122.93	150.63	100.5	53.57
Merged-chr9-77828693-3	chr9	77828556	77828756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	74121.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	115.89	126.27	173.42	167.72	184.1	163.69	162.43	194.3	223.63	230.47	268.83	133.76
Merged-chr5-21035881-3	chr5	21035784	21035984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-637.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	51.28	29.93	55.33	42.23	87.55	76.2	60.79	81.08	73.17	69.29	96.48	40.1
Merged-chr9-46273118-3	chr9	46273025	46273225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011752)	promoter-TSS (NM_011752)	61.0	NM_011752	22687.0	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	58.55	55.08	69.03	59.12	69.14	83.1	31.89	57.0	81.23	74.81	94.47	55.45
Merged-chr7-114356666-3	chr7	114356572	114356772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029438, intron 3 of 4)	intron (NR_029438, intron 3 of 4)	58489.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	98.12	98.85	119.8	143.59	103.91	119.47	90.02	142.65	137.09	106.95	160.79	89.91
Merged-chr11-23498069-3	chr11	23497957	23498157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290655)	promoter-TSS (NM_001290655)	-18.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	164.75	209.27	213.35	201.1	208.64	305.42	190.67	210.53	266.91	271.64	308.52	152.87
Merged-chr3-37420320-3	chr3	37420218	37420418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	368.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	90.85	84.26	60.47	88.48	118.64	94.07	67.43	99.25	156.96	148.12	199.49	92.1
Merged-chr5-32937145-3	chr5	32937060	32937260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	73439.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	23.42	23.9	45.64	53.09	33.55	24.77	39.86	40.01	29.11	30.13	33.67	26.63
Merged-chr17-32320807-3	chr17	32320698	32320898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017476)	TTS (NM_017476)	440.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	45.63	22.13	24.53	35.39	24.14	26.34	35.21	19.23	24.0	21.59	28.64	16.92
Merged-chr15-50772797-3	chr15	50772718	50772918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	116231.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	17.36	19.37	19.97	17.7	27.41	40.45	20.26	18.2	37.96	49.71	39.7	19.42
Merged-chr6-88106207-3	chr6	88106122	88106322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133933)	TTS (NM_133933)	-1964.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	29.88	26.41	18.25	23.33	34.36	34.18	14.28	26.78	51.34	49.21	50.25	38.85
Merged-chr9-108569885-3	chr9	108569775	108569975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026378)	promoter-TSS (NM_026378)	-17.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	60.97	44.52	63.89	38.21	68.73	63.97	40.86	52.29	80.05	68.79	113.56	43.86
Merged-chr17-17882831-3	chr17	17882720	17882920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	1119.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	28.27	29.68	35.37	34.99	41.32	52.37	48.83	70.49	38.16	55.23	57.28	16.29
Merged-chr5-150621824-3	chr5	150621739	150621939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362416, intron 6 of 7)	intron (NM_001362416, intron 6 of 7)	-27314.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	73.49	60.12	34.8	34.99	38.86	65.22	27.24	48.84	41.89	44.69	34.67	16.6
Merged-chr9-50711554-3	chr9	50711450	50711650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311069, intron 1 of 19)	intron (NM_001311069, intron 1 of 19)	16434.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	18.57	28.42	26.24	18.5	40.09	43.59	30.23	27.81	37.17	22.59	27.13	19.11
Merged-chr1-64189684-3	chr1	64189575	64189775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-68286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	17.36	18.86	34.8	19.71	28.23	22.26	21.59	23.66	39.53	23.6	39.19	26.94
Merged-chr14-31482554-3	chr14	31482454	31482654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359849, intron 4 of 4)	intron (NM_001359849, intron 4 of 4)	12204.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	23.02	18.11	19.97	25.34	42.55	34.49	15.94	41.61	47.8	33.64	63.31	36.03
Merged-chrUn_JH584304-49419-1	chrUn_JH584304	49319	49519	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10270.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	16.13	25.61	13.57	17.86
Merged-chr17-80563930-3	chr17	80563816	80564016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-82.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	71.47	69.92	67.31	70.79	55.64	57.38	30.89	40.29	72.38	51.21	76.88	25.06
Merged-chr19-6046525-3	chr19	6046435	6046635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-41.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	94.08	79.48	66.74	79.64	81.82	121.04	61.12	67.21	106.6	113.98	77.88	66.73
Merged-chr16-30873715-3	chr16	30873603	30873803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207729.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	18.57	19.37	10.84	26.55	21.27	27.28	10.3	21.22	21.24	19.58	30.65	17.86
Merged-chr4-125030002-3	chr4	125029903	125030103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145552)	promoter-TSS (NM_145552)	-11.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	82.37	60.62	76.44	56.71	104.73	107.87	52.15	71.92	117.03	127.03	167.33	67.98
Merged-chr11-58199495-3	chr11	58199390	58199590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018738)	promoter-TSS (NM_018738)	-66.0	NM_018738	16145.0	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	34.32	45.53	45.64	47.86	66.68	38.26	19.27	25.96	46.03	29.12	45.73	24.75
Merged-chr15-99398561-1	chr15	99398461	99398661	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	RSINE1|SINE|B4	5342.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.42	2.52	0.57	2.41	4.91	0.63	6.98	8.44	4.92	4.52	2.01	2.19
Merged-chr12-110979122-3	chr12	110978997	110979197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-57.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	154.25	149.91	166.57	135.94	103.5	111.63	85.7	107.78	109.16	100.92	126.12	64.22
Merged-chr19-46618516-3	chr19	46618414	46618614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4887.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	113.87	93.32	152.88	128.7	162.0	152.08	102.64	112.88	126.47	117.99	140.7	78.94
Merged-chr3-104818598-3	chr3	104818494	104818694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008619)	promoter-TSS (NM_008619)	-31.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	25.44	23.64	31.38	31.37	23.73	20.38	21.92	31.23	29.11	16.07	28.14	16.92
Merged-chr6-57765620-3	chr6	57765515	57765715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	59510.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	65.41	74.45	82.72	70.38	83.05	83.41	89.69	99.17	121.75	76.32	107.53	45.11
Merged-chr2-6740159-3	chr2	6740052	6740252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-18490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	54.92	34.96	72.45	47.86	50.73	56.44	49.16	73.57	60.58	59.25	90.45	36.65
Merged-chr2-118554888-1	chr2	118554788	118554988	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-5202.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	16.72	17.57	32.66	14.1
Merged-chr12-102748323-3	chr12	102748232	102748432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4572.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	69.45	59.11	117.51	75.61	72.0	80.9	54.48	118.46	90.87	80.84	107.03	60.77
Merged-chr9-13749191-3	chr9	13749106	13749306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	25.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	71.47	66.4	67.31	84.06	78.55	117.59	73.41	97.6	93.43	102.93	147.73	52.32
Merged-chr5-124112134-5	chr5	124112002	124112202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025671)	promoter-TSS (NM_025671)	-219.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	71.47	56.09	51.91	43.44	51.96	74.32	59.46	39.42	53.11	102.93	74.87	49.18
Merged-chr11-70982996-3	chr11	70982903	70983103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007573)	promoter-TSS (NM_007573)	23.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	45.63	52.82	54.76	42.23	55.64	71.81	31.22	41.05	56.65	72.3	59.29	30.07
Merged-chr1-155973360-3	chr1	155973267	155973467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-112.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	128.41	93.07	106.1	91.7	126.41	130.76	82.05	94.4	160.3	155.65	166.82	88.03
Merged-chr13-119462700-3	chr13	119462567	119462767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-92.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	89.64	62.63	87.85	104.57	79.37	89.05	57.13	118.6	75.33	67.28	98.49	61.4
Merged-chr15-64234580-3	chr15	64234497	64234697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	78076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	32.71	29.18	58.19	23.73	45.41	31.67	41.52	41.3	46.81	39.67	53.26	46.99
Merged-chr11-114793120-3	chr11	114793023	114793223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2769.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	45.63	34.96	34.8	51.08	36.82	30.42	22.59	39.0	28.72	35.15	21.1	26.31
Merged-chr13-113615182-3	chr13	113615078	113615278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3386.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	40.78	49.55	53.05	45.85	54.82	70.24	61.78	52.32	104.83	93.39	157.28	53.88
Merged-chr2-165882031-3	chr2	165881912	165882112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	266.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	44.42	26.16	41.64	23.33	50.32	58.01	24.58	38.61	39.34	24.1	25.63	20.36
Merged-chr7-127233160-3	chr7	127233055	127233255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030674)	promoter-TSS (NR_030674)	-25.0	NR_030674	100043580.0	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	49.26	47.54	29.09	31.77	39.27	42.33	40.52	34.91	43.07	60.25	53.77	36.34
Merged-chr17-3557714-5	chr17	3557476	3557676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045302)	promoter-TSS (NR_045302)	137.0	NM_146074	224481.0	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	42.8	64.39	58.19	71.59	80.59	61.77	93.34	63.42	70.41	86.86	91.45	62.65
Merged-chr1-160212954-3	chr1	160212854	160213054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-62.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	316.58	307.62	336.0	290.79	357.15	377.86	282.68	301.77	362.1	398.67	452.74	200.8
Merged-chr18-24020876-3	chr18	24020797	24020997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021559)	promoter-TSS (NM_021559)	-84.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	46.84	22.89	34.23	43.04	47.05	38.88	25.58	34.21	52.91	54.73	73.86	39.47
Merged-chr5-52741583-3	chr5	52741481	52741681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025951)	promoter-TSS (NM_025951)	7.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	46.03	23.9	22.82	20.91	25.36	40.14	19.6	33.62	33.63	36.65	36.18	27.57
Merged-chr9-104269471-3	chr9	104269358	104269558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6528.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	58.55	60.12	46.21	35.8	47.87	66.16	32.55	53.78	90.87	83.35	71.35	50.44
Merged-chr4-3685360-3	chr4	3685226	3685426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	7205.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	92.87	68.92	85.57	59.12	76.5	120.41	61.45	68.02	118.6	119.5	119.59	56.39
Merged-chr11-59526875-3	chr11	59526775	59526975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14694.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	51.28	32.95	54.19	45.85	84.68	82.16	41.19	74.02	63.92	93.39	76.88	50.75
Merged-chr5-36530579-3	chr5	36530475	36530675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113364)	promoter-TSS (NM_001113364)	48.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	70.26	55.34	46.78	120.66	78.55	57.07	50.49	89.41	43.66	54.73	73.86	51.06
Merged-chr12-100116210-3	chr12	100116113	100116313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008947, intron 5 of 9)	intron (NM_008947, intron 5 of 9)	3882.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	132.44	108.41	168.28	164.9	148.91	141.11	178.71	207.17	169.15	126.53	199.99	130.01
Merged-chr10-128673993-3	chr10	128673880	128674080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-62.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	52.09	46.53	52.48	76.02	57.27	52.37	54.48	93.56	78.09	54.23	85.92	34.77
Merged-chr3-116482909-3	chr3	116482811	116483011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25264.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	35.13	34.71	35.37	37.81	21.27	39.82	18.93	32.52	39.14	35.15	36.18	25.69
Merged-chr7-90214210-3	chr7	90214104	90214304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51228.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	21.8	17.86	25.1	20.91	44.59	21.95	32.88	35.83	71.79	57.24	117.08	49.18
Merged-chr6-143167718-2	chr6	143167607	143167807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029250, intron 1 of 7)	CpG	477.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	15.75	20.63	18.83	15.28	16.77	12.23	21.92	15.7	24.39	23.1	17.59	16.92
Merged-chr2-5012817-3	chr2	5012705	5012905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305259)	promoter-TSS (NM_001305259)	-14.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	59.36	64.89	73.02	78.03	82.23	103.79	49.83	67.35	98.93	90.38	141.7	48.56
Merged-chr11-77607964-3	chr11	77607864	77608064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144825)	promoter-TSS (NM_144825)	-149.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	68.65	48.29	58.76	51.48	72.41	76.51	44.84	53.13	90.28	84.35	79.89	38.53
Merged-chr1-156615760-3	chr1	156615657	156615857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	56970.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	26.65	31.19	37.65	55.91	98.59	94.7	50.82	89.83	76.51	43.68	61.3	52.94
Merged-chr15-43282723-3	chr15	43282626	43282826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008388)	promoter-TSS (NM_008388)	10.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	106.6	74.2	69.03	90.49	105.55	101.28	51.15	118.15	124.9	87.87	139.19	96.8
Merged-chr18-53877629-3	chr18	53877529	53877729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 1 of 12)	intron (NM_152809, intron 1 of 12)	15516.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	25.44	21.13	30.23	41.43	47.87	58.32	71.08	59.41	36.19	38.66	55.78	33.83
Merged-chr18-31789066-3	chr18	31788964	31789164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357480)	promoter-TSS (NM_001357480)	-61.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	85.6	59.36	76.44	78.83	94.09	103.17	61.12	117.51	104.83	116.99	124.62	67.98
Merged-chr6-4600949-4	chr6	4600843	4601043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	-123.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	18.57	15.59	19.97	14.88	22.91	17.87	17.27	26.07	20.85	27.62	33.16	21.93
Merged-chr19-12796272-3	chr19	12796162	12796362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	69.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	146.58	161.23	138.05	163.29	165.28	181.87	143.17	145.21	191.57	178.25	205.01	96.17
Merged-chr6-124478157-3	chr6	124478061	124478261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13377.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	71.07	52.32	39.93	34.99	69.96	84.35	46.84	40.12	78.68	81.34	59.29	44.48
Merged-chr5-22550397-3	chr5	22550303	22550503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	-10.0	NR_102315	320719.0	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	111.04	114.19	123.22	156.46	118.64	150.51	108.62	177.08	148.89	157.66	205.52	117.16
Merged-chr4-14864222-3	chr4	14864121	14864321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	2.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	52.9	58.61	31.95	37.4	92.46	79.33	59.46	83.86	93.23	87.87	144.71	55.45
Merged-chr19-41802102-3	chr19	41801996	41802196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163495)	promoter-TSS (NM_001163495)	-12.0	NM_027667	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	107.81	102.12	123.22	111.01	128.87	142.36	92.68	144.59	120.57	144.61	167.33	82.7
Merged-chr6-83482597-3	chr6	83482494	83482694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 4 of 6)	L2b|LINE|L2	24375.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	62.59	54.08	94.7	100.95	76.91	62.09	59.13	75.31	49.57	39.67	58.29	46.99
Merged-chr2-68873296-3	chr2	68873193	68873393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11852.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	44.82	39.74	55.33	62.74	36.41	58.95	38.2	48.42	44.84	42.18	42.71	34.46
Merged-chr14-54686227-3	chr14	54686139	54686339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	68.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	35.13	32.95	36.51	30.97	31.09	41.71	20.26	30.67	36.58	32.64	25.63	17.23
Merged-chr7-144581782-3	chr7	144581775	144581975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010175, intron 1 of 1)	intron (NM_010175, intron 1 of 1)	561.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	34.32	51.06	45.07	41.02	38.46	38.57	50.82	36.76	42.09	58.24	43.72	37.91
Merged-chr13-23571314-3	chr13	23571247	23571447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	-53.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	132.85	114.45	115.23	139.16	117.41	121.67	117.59	138.93	155.78	172.72	190.44	108.08
Merged-chr17-29347871-3	chr17	29347755	29347955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019880)	promoter-TSS (NM_019880)	77.0	NM_019880	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	121.54	118.47	100.4	106.58	150.14	185.32	105.96	107.22	147.12	144.1	148.73	86.77
Merged-chr4-99120521-3	chr4	99120425	99120625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	CpG	390.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	18.98	27.67	29.09	28.56	22.5	27.91	28.9	39.0	33.24	30.63	35.68	26.63
Merged-chr12-40038064-3	chr12	40037937	40038137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-50.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	90.85	87.03	79.29	79.23	126.82	139.85	82.71	143.02	159.12	183.77	226.62	120.61
Merged-chr9-57557451-3	chr9	57557361	57557561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3483.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	32.3	27.67	25.67	39.01	43.36	43.27	19.93	43.32	32.06	23.6	30.15	21.62
Merged-chr19-6297829-3	chr19	6297715	6297915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 4 of 4)	intron (NM_010119, intron 4 of 4)	-8642.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	226.53	209.02	285.8	178.98	243.42	301.34	219.9	209.16	249.6	284.69	317.07	134.39
Merged-chr5-122900436-3	chr5	122900337	122900537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-87.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	90.45	58.1	74.73	57.11	77.32	77.77	44.51	60.22	94.02	62.76	109.04	47.3
Merged-chr2-52772601-3	chr2	52772514	52772714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-30465.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	24.63	13.08	26.24	17.29	29.46	44.84	34.21	18.62	34.42	43.18	41.71	25.37
Merged-chr9-59537888-3	chr9	59537775	59537975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1665.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	12.52	14.59	19.4	17.7	17.59	14.11	21.26	32.19	14.55	35.15	26.63	25.37
Merged-chr11-4160310-3	chr11	4160243	4160443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164620)	promoter-TSS (NM_001164620)	-11.0	NM_026175	67465.0	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	75.11	67.16	45.64	59.53	96.14	82.78	40.19	67.91	101.49	105.44	125.12	65.16
Merged-chr4-128711615-3	chr4	128711498	128711698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 6 of 14)	intron (NM_018774, intron 6 of 14)	-15973.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	29.07	23.9	33.09	23.33	24.96	34.49	16.61	22.07	36.58	33.64	45.73	22.56
Merged-chr12-69502544-2	chr12	69502435	69502635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26985.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	31.09	21.88	37.65	42.23	31.91	48.92	25.58	34.71	61.56	50.71	84.42	43.23
Merged-chr19-55741723-3	chr19	55741640	55741840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-70.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	107.81	106.65	99.26	127.1	103.5	141.73	92.68	98.13	164.82	152.64	157.78	79.88
Merged-chr13-117024648-4	chr13	117024542	117024742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 2 of 26)	CpG	874.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	21.8	28.67	18.83	30.97	24.14	27.91	37.54	19.49	36.39	22.09	22.61	17.54
Merged-chr17-50513568-1	chr17	50513468	50513668	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	4021.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.21	2.26	2.28	2.82	4.5	12.86	4.32	7.43	6.1	9.04	2.01	4.07
Merged-chr10-67290779-3	chr10	67290673	67290873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5492.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	18.17	18.86	28.52	20.51	24.55	39.82	24.91	30.59	36.19	42.18	43.21	23.18
Merged-chr19-46503808-3	chr19	46503712	46503912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2164.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	33.92	26.16	25.67	32.18	36.0	38.26	32.88	40.51	40.12	56.74	57.79	39.47
Merged-chr7-45459874-3	chr7	45459770	45459970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010240)	promoter-TSS (NM_010240)	16.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	214.01	232.91	281.24	254.99	252.83	284.1	188.34	174.28	323.36	317.33	417.06	192.97
Merged-chr1-182935601-3	chr1	182935493	182935693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19195.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	53.7	50.81	57.05	55.1	51.55	31.98	37.2	25.01	39.14	28.12	41.2	21.93
Merged-chr1-95313635-3	chr1	95313549	95313749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	21.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	105.39	111.93	134.63	155.65	136.23	153.65	106.29	142.46	177.61	163.69	215.06	112.46
Merged-chr6-85915978-6	chr6	85915863	85916063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023160)	promoter-TSS (NM_023160)	-8.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	18.57	19.62	22.82	10.05	27.41	55.19	31.56	15.34	51.93	66.28	71.35	58.27
Merged-chr19-4756493-3	chr19	4756384	4756584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-41.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	91.66	69.17	61.61	59.93	105.96	100.97	51.82	63.22	103.65	103.43	129.64	78.63
Merged-chr12-3981535-3	chr12	3981445	3981645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082483, intron 10 of 22)	intron (NM_001082483, intron 10 of 22)	26600.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	63.8	48.54	60.47	78.83	74.05	84.98	52.82	81.45	69.43	60.75	134.67	54.2
Merged-chr11-106999611-3	chr11	106999509	106999709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-84.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	59.76	81.5	59.9	65.96	77.32	85.61	56.47	51.98	113.49	130.55	81.4	62.97
Merged-chr4-141538847-3	chr4	141538747	141538947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019763)	promoter-TSS (NM_019763)	-250.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	195.84	167.77	173.99	170.53	148.91	249.29	147.82	151.99	227.76	206.87	291.44	123.74
Merged-chr2-4508151-3	chr2	4508070	4508270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-51584.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	83.59	87.28	122.08	90.09	112.5	145.18	104.97	117.14	123.32	153.64	165.82	93.35
Merged-chr1-193173109-2	chr1	193173010	193173210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-359.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	27.46	9.81	23.96	22.52	32.32	33.55	20.93	35.52	26.36	17.57	57.28	22.56
Merged-chr2-21029845-3	chr2	21029743	21029943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60969.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	16.96	15.85	20.54	23.73	40.09	47.98	38.86	41.75	37.17	52.72	52.76	30.39
Merged-chr8-61920599-3	chr8	61920490	61920690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7497.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	57.74	74.96	64.46	78.43	115.37	108.18	82.71	122.05	132.37	120.51	139.19	83.64
Merged-chr5-124327594-3	chr5	124327495	124327695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	377.0	NM_001081323	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	71.47	52.57	57.62	49.07	88.37	68.05	28.9	49.54	90.08	98.41	83.91	63.59
Merged-chr11-34010008-1	chr11	34009908	34010108	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16815.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	4.04	5.03	16.54	2.82	18.0	30.42	18.6	15.76	22.23	18.58	23.62	15.04
Merged-chr8-109693358-3	chr8	109693261	109693461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-67.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	127.2	115.45	103.82	113.02	116.19	131.7	86.36	108.62	154.99	159.17	161.8	103.38
Merged-chr5-30040059-3	chr5	30039953	30040153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26939.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	49.67	52.57	43.93	49.07	63.41	84.35	43.51	33.34	65.5	66.78	67.84	39.47
Merged-chr4-155178470-3	chr4	155178357	155178557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	44078.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	37.96	24.15	20.54	39.82	26.59	24.15	27.24	38.44	45.63	38.16	67.33	39.16
Merged-chr14-76081969-2	chr14	76081866	76082066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28849.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	20.19	17.61	27.38	24.53	12.68	21.01	19.27	19.01	35.8	36.15	32.66	9.4
Merged-chr7-49397917-1	chr7	49397817	49398017	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	151728.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.25	2.28	0.8	4.5	3.45	6.64	15.76	1.18	2.01	0.5	2.82
Merged-chr11-46265571-3	chr11	46265468	46265668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 13 of 30)	Lx8|LINE|L1	30011.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	82.37	73.7	73.59	68.78	77.32	102.85	60.12	96.98	109.75	84.86	139.19	41.66
Merged-chr4-44981440-3	chr4	44981345	44981545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312880)	promoter-TSS (NM_001312880)	51.0	NM_001312880	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	59.36	65.15	53.62	63.95	91.23	84.98	83.37	75.17	70.22	75.82	70.35	44.17
Merged-chr4-43470483-3	chr4	43470382	43470582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	13227.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	20.19	40.5	60.47	62.34	58.09	43.59	41.52	59.3	40.32	28.62	46.23	26.31
Merged-chr6-83038843-3	chr6	83038747	83038947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	4623.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	52.49	40.5	64.46	42.23	35.59	58.95	22.59	45.34	89.3	72.81	109.54	51.38
Merged-chr1-170796000-3	chr1	170795907	170796107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71764.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	51.28	53.83	63.89	65.96	63.41	45.78	54.48	48.9	66.28	58.75	32.16	45.74
Merged-chr18-34855431-3	chr18	34855338	34855538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5769.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	30.69	27.67	42.21	24.53	21.68	72.44	42.52	37.35	57.63	53.22	68.34	46.36
Merged-chr17-47611540-3	chr17	47611437	47611637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	-45.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	63.8	51.06	26.81	26.95	50.73	56.44	21.26	44.38	92.84	64.27	81.4	49.81
Merged-chr3-31106721-3	chr3	31106621	31106821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	11663.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	36.75	40.5	47.35	34.99	59.32	56.44	31.22	49.32	56.84	57.74	50.75	52.0
Merged-chr12-117843740-3	chr12	117843636	117843836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146040)	promoter-TSS (NM_146040)	-125.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	54.51	65.65	48.49	67.97	53.18	36.69	63.44	55.51	59.6	44.19	47.23	46.68
Merged-chr14-120453805-3	chr14	120453707	120453907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-24654.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	34.73	15.09	22.82	18.5	24.14	36.37	36.54	16.32	40.12	41.17	47.74	16.29
Merged-chr17-34024717-3	chr17	34024599	34024799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-19.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	61.78	28.42	22.82	38.21	39.68	33.55	19.27	26.24	78.68	59.25	58.79	34.15
Merged-chr15-101269265-1	chr15	101269165	101269365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010444, intron 1 of 6)	B3A|SINE|B2	2419.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	14.94	16.85	1.14	2.41	4.09	12.23	0.33	1.46	13.77	14.56	4.02	0.94
Merged-chr11-29707037-3	chr11	29706936	29707136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-11527.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	27.46	22.89	22.82	22.12	32.32	41.71	26.24	50.22	32.65	24.1	42.21	24.43
Merged-chr7-25705883-3	chr7	25705771	25705971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011577)	TTS (NM_011577)	13182.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	47.65	37.23	81.0	76.42	72.41	67.42	89.02	62.13	81.23	90.88	88.94	66.41
Merged-chr1-39614590-3	chr1	39614495	39614695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36587.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	16.56	7.29	19.4	11.66	14.32	19.44	16.61	18.31	31.47	21.09	33.67	21.62
Merged-chr6-142387128-3	chr6	142387032	142387232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204907)	promoter-TSS (NM_001204907)	-45.0	NM_023042	19691.0	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	155.06	122.24	150.03	138.36	157.91	171.84	140.51	213.39	208.29	205.36	247.72	140.34
Merged-chr3-146616750-3	chr3	146616641	146616841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009474, intron 4 of 7)	intron (NM_009474, intron 4 of 7)	-1143.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	43.21	51.56	73.02	39.42	99.82	120.73	83.71	106.82	47.6	56.24	65.83	28.19
Merged-chr13-29984407-3	chr13	29984288	29984488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	3.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	106.2	112.18	139.19	108.59	114.14	143.93	98.32	144.37	178.2	165.69	195.97	109.96
Merged-chr5-66062597-3	chr5	66062512	66062712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	35567.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	54.51	52.32	38.79	64.75	81.0	89.37	71.08	87.84	92.44	96.91	74.37	58.89
Merged-chr2-84715297-3	chr2	84715167	84715367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-103.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	155.06	166.51	167.14	166.91	184.91	222.64	160.77	169.18	237.8	192.31	288.93	119.04
Merged-chr12-37242708-3	chr12	37242602	37242802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1063.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	47.65	44.52	46.78	51.08	76.5	57.07	52.48	88.29	87.53	58.24	107.03	41.35
Merged-chr1-120121148-3	chr1	120121054	120121254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	-33.0	NM_028439	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	107.01	131.3	142.04	124.68	125.19	148.32	98.65	152.55	157.35	164.69	237.17	81.76
Merged-chr10-86727822-3	chr10	86727724	86727924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003910, intron 4 of 15)	intron (NM_001003910, intron 4 of 15)	15059.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	47.24	30.18	44.5	53.09	78.55	45.78	53.48	67.68	40.71	33.64	43.21	35.71
Merged-chr14-63860294-3	chr14	63860193	63860393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028228)	promoter-TSS (NM_028228)	-19.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	52.9	42.26	52.48	39.82	55.23	67.73	42.52	45.56	58.61	67.78	92.46	42.29
Merged-chr16-64770989-3	chr16	64770878	64771078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	-39.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	25.44	28.42	38.22	39.82	29.86	37.32	29.23	24.28	46.22	57.74	63.31	40.41
Merged-chr4-141560134-3	chr4	141560045	141560245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13983.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	22.61	12.58	21.68	4.02	35.59	74.94	16.94	33.0	28.52	24.6	23.62	16.29
Merged-chr10-95324072-3	chr10	95323958	95324158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330175)	promoter-TSS (NM_001330175)	79.0	NM_001330141	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	46.03	48.8	44.5	35.8	38.05	54.88	32.88	37.21	69.82	55.23	69.85	40.1
Merged-chr11-54884611-3	chr11	54884504	54884704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	18221.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	39.17	23.14	25.1	47.86	51.96	44.21	55.14	54.42	49.96	51.21	55.27	50.12
Merged-chr2-180582681-3	chr2	180582557	180582757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151482, exon 2 of 5)	non-coding (NR_151482, exon 2 of 5)	1435.0	NR_151482	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	88.84	92.06	81.58	69.18	85.91	92.19	85.7	86.78	125.68	128.04	102.51	53.26
Merged-chr7-102248731-3	chr7	102248628	102248828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1390.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	33.92	32.2	45.07	17.7	41.73	47.66	27.24	27.34	42.09	55.73	49.24	23.81
Merged-chr10-80677317-3	chr10	80677222	80677422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1029.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	33.92	15.59	34.23	23.33	41.32	32.93	30.89	35.61	44.25	42.18	56.28	25.69
Merged-chr2-160068986-3	chr2	160068874	160069074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52321.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	34.73	36.47	53.05	29.76	56.05	63.34	43.51	54.28	38.55	46.19	38.19	32.27
Merged-chr12-3420700-3	chr12	3420578	3420778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	6069.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	14.54	7.29	13.69	27.75	16.36	15.99	15.94	18.53	25.57	7.03	23.11	17.54
Merged-chr2-129320179-3	chr2	129320087	129320287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10215.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	123.56	124.25	113.52	130.31	114.14	160.55	104.63	116.16	112.31	88.87	147.23	66.41
Merged-chr17-14943152-3	chr17	14943045	14943245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083880)	promoter-TSS (NM_001083880)	-21.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	138.91	96.08	85.0	111.01	134.19	134.21	107.96	140.3	182.53	159.17	182.9	88.34
Merged-chr4-43669294-3	chr4	43669209	43669409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175517)	promoter-TSS (NM_175517)	338.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	65.82	62.38	58.76	55.91	65.46	63.34	77.73	55.49	61.17	42.68	86.93	52.63
Merged-chr17-34157101-3	chr17	34157001	34157201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010387, intron 2 of 5)	intron (NM_010387, intron 2 of 5)	3910.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	27.05	19.37	22.82	16.89	15.14	29.48	16.61	18.81	30.09	23.1	19.09	14.41
Merged-chr19-56748095-3	chr19	56747997	56748197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25725.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	30.28	22.89	42.21	38.21	38.86	49.54	84.04	84.42	30.49	25.11	83.41	28.51
Merged-chr12-79017469-3	chr12	79017376	79017576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10199.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	34.73	47.04	21.11	19.31	128.87	166.19	126.56	113.52	45.83	38.16	49.24	14.41
Merged-chr18-60744795-3	chr18	60744714	60744914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1932.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	133.66	98.1	152.31	160.48	115.78	170.27	134.86	186.7	150.27	120.51	199.99	95.86
Merged-chr5-115158333-3	chr5	115158223	115158423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-147.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	189.38	193.68	197.95	189.84	197.19	263.09	198.97	181.96	288.15	298.25	306.01	177.62
Merged-chr19-41774261-3	chr19	41774152	41774352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27291.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	37.96	29.18	47.35	55.91	38.46	30.73	43.18	48.39	35.6	24.6	43.21	26.94
Merged-chr1-177483769-3	chr1	177483660	177483860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	37939.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	27.86	28.42	43.93	19.71	28.64	35.75	20.93	35.33	36.39	31.13	26.63	20.68
Merged-chr12-76370432-3	chr12	76370338	76370538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	172.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	62.18	67.91	71.88	76.42	72.82	78.71	58.79	80.36	87.53	57.74	135.17	71.42
Merged-chr11-117654667-3	chr11	117654577	117654777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_198022, exon 1 of 22)	5' UTR (NM_198022, exon 1 of 22)	388.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	149.4	141.11	147.18	109.8	175.51	169.64	82.38	104.5	170.92	188.79	162.3	102.44
Merged-chr12-83958513-3	chr12	83958406	83958606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7898.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	18.98	23.14	27.38	28.96	21.68	33.55	18.6	19.65	45.04	34.14	39.7	25.37
Merged-chr11-60210524-3	chr11	60210423	60210623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-52.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	115.08	97.09	74.16	107.79	108.41	126.68	58.79	93.95	95.39	73.31	92.96	42.92
Merged-chr10-122054625-3	chr10	122054531	122054731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7316.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	105.79	88.79	121.51	113.42	119.05	147.38	120.25	147.2	165.61	153.14	176.37	125.31
Merged-chr16-90215433-3	chr16	90215333	90215533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5309.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	72.68	85.27	113.52	100.15	96.14	131.7	77.4	98.38	121.95	107.45	147.73	83.64
Merged-chr7-43782673-3	chr7	43782567	43782767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1613.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	33.52	31.19	27.38	35.39	35.18	33.87	24.25	37.35	38.55	42.68	65.32	26.63
Merged-chr5-100040453-1	chr5	100040353	100040553	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163035, intron 1 of 6)	intron (NM_001163035, intron 1 of 6)	459.0	NR_027990	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	16.56	10.82	6.85	8.45	7.36	11.6	17.27	11.24	12.59	23.6	23.62	12.53
Merged-chr8-46152515-3	chr8	46152412	46152612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-11139.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	34.73	30.69	32.52	25.74	38.05	37.94	22.26	39.65	54.48	38.66	67.33	27.25
Merged-chr3-20304954-3	chr3	20304851	20305051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29218.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	51.28	75.21	110.1	122.27	101.87	83.41	105.3	111.59	85.17	75.32	111.55	45.74
Merged-chr10-75512681-3	chr10	75512572	75512772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4709.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	27.46	21.13	44.5	30.57	45.41	53.93	29.9	41.19	54.88	46.7	91.95	32.58
Merged-chr6-42396608-3	chr6	42396502	42396702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3636.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	142.14	134.32	163.15	170.13	157.91	167.45	146.16	181.99	165.81	139.59	175.87	118.73
Merged-chr3-116162351-3	chr3	116162259	116162459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32671.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	42.4	24.9	58.76	55.1	48.27	33.87	59.13	85.79	32.85	36.65	47.23	24.12
Merged-chr17-84790791-3	chr17	84790684	84790884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	2.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	90.05	146.39	100.97	142.38	86.73	126.06	92.34	88.65	125.49	139.59	123.61	77.38
Merged-chr13-75839829-3	chr13	75839714	75839914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-71.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	79.14	90.05	93.55	95.32	121.91	110.38	105.63	151.29	90.87	103.43	135.67	65.79
Merged-chr2-181678971-3	chr2	181678882	181679082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1315.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	34.32	33.45	51.91	48.67	39.27	35.12	29.23	29.83	32.06	22.59	43.72	26.31
Merged-chr8-92822553-3	chr8	92822463	92822663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4734.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	23.02	20.88	37.08	23.33	41.73	34.18	40.52	46.07	49.37	39.67	49.75	22.56
Merged-chrX-7764026-6	chrX	7763914	7764114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271491)	promoter-TSS (NM_001271491)	-27.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	38.76	50.31	30.8	41.43	65.05	86.86	69.42	47.24	34.03	55.73	43.21	24.43
Merged-chrX-77795978-3	chrX	77795902	77796102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016979)	promoter-TSS (NM_016979)	-42.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	62.99	63.13	71.88	57.51	58.5	82.16	46.17	86.97	90.08	108.96	145.72	55.45
Merged-chr1-78657795-3	chr1	78657709	78657909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028817)	promoter-TSS (NM_028817)	-16.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	178.07	163.49	227.04	208.34	214.37	249.6	188.01	273.23	268.09	220.42	341.69	145.36
Merged-chr4-132794944-3	chr4	132794850	132795050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1414.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	47.65	30.69	47.92	25.74	54.0	53.93	29.9	39.25	72.38	67.28	74.37	38.53
Merged-chr13-67500528-3	chr13	67500444	67500644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-22.0	NM_001007575	238693.0	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	28.27	30.18	31.38	49.07	27.82	34.49	20.59	53.22	74.15	78.83	107.53	49.81
Merged-chr9-50528633-3	chr9	50528503	50528703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	38.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	103.78	114.19	94.13	95.32	106.78	116.02	119.58	91.43	90.67	131.05	118.08	80.51
Merged-chr7-47070202-3	chr7	47070116	47070316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	13008.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	41.59	32.95	54.19	53.89	59.73	47.35	69.09	90.84	58.42	35.65	54.27	33.52
Merged-chr2-26483380-3	chr2	26483284	26483484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13265.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	71.88	56.59	47.35	43.44	85.5	107.24	51.15	83.24	86.74	77.83	101.0	50.12
Merged-chr2-27679881-3	chr2	27679774	27679974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2673.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	16.15	15.09	16.54	5.63	21.27	19.44	25.91	15.31	25.57	24.6	23.62	18.8
Merged-chr14-55089357-3	chr14	55089242	55089442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	2706.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	63.4	29.43	34.8	64.35	87.96	86.86	54.81	79.85	67.07	64.77	113.56	50.12
Merged-chr2-128803597-3	chr2	128803492	128803692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008587)	TTS (NM_008587)	-14711.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	26.25	22.39	19.97	24.94	32.73	27.59	37.2	54.62	16.52	20.08	19.09	18.17
Merged-chr13-12395254-3	chr13	12395119	12395319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-156.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	159.1	215.06	159.16	204.32	203.32	258.7	202.29	166.23	328.08	306.28	387.41	169.79
Merged-chr2-124622205-3	chr2	124622094	124622294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	11898.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	132.44	104.13	122.08	144.79	139.91	158.35	159.44	175.85	154.79	114.98	172.85	125.93
Merged-chrX-163958158-3	chrX	163958056	163958256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178794, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	510.0	NM_009453	22184.0	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	47.65	55.34	41.07	37.81	51.14	55.82	48.16	59.66	69.04	63.77	123.61	46.68
Merged-chr5-74093004-3	chr5	74092910	74093110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_145133)	promoter-TSS (NR_145133)	-50.0	NR_015531	70036.0	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	132.44	150.92	196.81	192.25	184.51	195.67	183.03	264.65	209.28	259.09	298.98	145.36
Merged-chr6-86494023-3	chr6	86493915	86494115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5788.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	86.01	84.76	69.03	53.49	74.87	95.01	39.53	36.81	74.15	80.34	64.32	36.65
Merged-chr9-27030100-3	chr9	27030034	27030234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	-40.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	37.15	36.22	61.61	42.23	55.64	52.99	60.46	60.59	103.06	67.28	106.53	62.34
Merged-chr4-62329105-1	chr4	62329005	62329205	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355385, intron 13 of 27)	intron (NM_001355385, intron 13 of 27)	31491.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	9.69	5.28	16.54	10.05	13.91	12.86	9.97	14.78	25.18	25.11	14.07	12.84
Merged-chr11-53795000-3	chr11	53794909	53795109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24536.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	114.68	66.4	144.9	151.63	139.91	138.91	126.56	133.04	141.03	113.48	173.86	74.56
Merged-chr4-121009307-3	chr4	121009202	121009402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	7945.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	50.88	37.23	51.34	29.36	63.82	45.78	25.91	42.53	52.52	46.7	49.75	35.4
Merged-chr4-12461380-1	chr4	12461280	12461480	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-289365.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	2.42	2.77	2.85	6.03	1.64	3.76	9.63	9.06	8.26	5.02	4.52	1.57
Merged-chr19-5931758-3	chr19	5931654	5931854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6938.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	150.21	147.65	181.41	103.37	174.69	219.81	131.87	114.67	157.55	166.2	173.36	82.39
Merged-chr2-14192257-3	chr2	14192163	14192363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081310, exon 2 of 4)	exon (NM_001081310, exon 2 of 4)	17739.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	69.45	59.11	63.89	94.52	94.09	113.2	61.45	94.07	75.92	85.86	98.99	35.4
Merged-chr11-75644941-3	chr11	75644850	75645050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008916, intron 7 of 11)	MIRb|SINE|MIR	-6559.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	13.73	19.12	27.95	28.96	29.05	34.81	18.93	31.96	31.67	25.61	44.22	21.62
Merged-chr7-29231643-3	chr7	29231557	29231757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	865.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	20.19	19.87	21.68	21.32	11.86	28.22	27.9	35.41	29.11	9.04	39.7	17.54
Merged-chr9-59539794-5	chr9	59539682	59539882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010421, exon 1 of 14)	exon (NM_010421, exon 1 of 14)	242.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	29.07	37.48	23.39	26.95	20.46	30.73	30.89	21.25	34.03	47.7	36.68	36.65
Merged-chr11-6695441-3	chr11	6695355	6695555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	24582.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	16.56	19.12	22.82	18.1	23.73	25.71	23.25	21.59	24.0	22.59	39.7	16.6
Merged-chr16-13903685-1	chr16	13903585	13903785	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	524.0	NM_001289562	93734.0	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	10.9	9.06	13.12	7.64	14.32	20.07	11.29	13.82	23.8	16.57	26.63	18.17
Merged-chr8-23208435-3	chr8	23208330	23208530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	23.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	63.8	49.05	98.12	81.65	83.05	89.37	76.4	114.34	85.95	71.3	157.28	53.88
Merged-chr13-5803037-3	chr13	5802929	5803129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55063.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	117.5	84.01	59.33	69.18	84.28	143.62	87.36	88.15	142.4	136.57	157.28	59.83
Merged-chr19-4283271-3	chr19	4283180	4283380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-143.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	121.14	99.61	103.82	79.23	159.55	147.69	72.08	85.35	144.57	166.2	155.77	63.91
Merged-chr8-83109966-3	chr8	83109874	83110074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55378.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	41.99	40.24	56.48	57.11	55.64	62.71	46.84	50.13	45.83	44.19	56.28	37.91
Merged-chr2-25461106-3	chr2	25461029	25461229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153557)	promoter-TSS (NM_153557)	-35.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	139.31	103.38	119.23	111.01	137.87	163.69	76.4	95.61	129.42	159.17	160.79	93.35
Merged-chr1-138967616-3	chr1	138967511	138967711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181347)	promoter-TSS (NM_181347)	-110.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	30.69	21.38	22.82	39.42	37.23	40.45	31.56	40.07	43.07	28.12	49.75	18.48
Merged-chr18-50038540-3	chr18	50038439	50038639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	7555.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	29.48	20.12	29.09	37.4	24.55	25.09	24.25	33.39	32.45	24.6	41.2	16.92
Merged-chr11-107479441-3	chr11	107479343	107479543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-85.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	129.62	110.92	132.92	81.65	132.55	131.39	102.64	93.87	154.01	149.63	169.84	114.97
Merged-chr9-96393321-3	chr9	96393230	96393430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-28899.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	29.07	25.15	42.78	27.35	50.73	64.28	35.87	73.26	77.5	77.83	124.62	52.0
Merged-chr13-55022906-3	chr13	55022845	55023045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1560.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	24.63	35.97	33.66	32.18	21.68	32.3	24.58	27.39	39.73	43.18	39.7	25.06
Merged-chr14-62026762-3	chr14	62026667	62026867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	266212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	22.21	21.38	41.07	35.8	29.86	22.26	20.93	24.7	29.5	9.54	25.12	15.35
Merged-chr7-128392090-2	chr7	128391994	128392194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26078.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	13.33	19.62	21.11	26.95	24.96	17.56	9.63	23.07	24.98	19.58	22.11	17.86
Merged-chr12-51348211-3	chr12	51348105	51348305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167963)	promoter-TSS (NM_001167963)	-25.0	NM_001167964	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	90.45	72.69	97.55	129.51	112.5	93.44	108.29	168.28	87.33	72.3	110.04	51.06
Merged-chr19-5491470-3	chr19	5491364	5491564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007687, intron 1 of 3)	intron (NM_007687, intron 1 of 3)	1009.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	50.47	54.33	83.29	63.15	45.82	78.08	50.49	41.16	59.99	70.8	60.8	41.98
Merged-chr4-9737845-3	chr4	9737747	9737947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-32738.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	121.14	112.94	172.28	157.66	170.6	177.17	163.43	208.71	156.76	151.13	206.52	109.64
Merged-chr2-84650753-3	chr2	84650639	84650839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007615)	promoter-TSS (NM_007615)	1.0	NM_001085449	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	36.75	30.43	27.38	23.73	43.77	42.02	46.84	22.63	64.51	47.2	80.9	22.24
Merged-chr9-66360424-3	chr9	66360322	66360522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	9972.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	12.11	13.33	3.42	5.23	13.5	20.7	11.96	15.36	16.33	14.06	7.03	4.39
Merged-chr14-77537297-2	chr14	77537196	77537396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30428.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	21.0	15.34	16.54	25.34	15.14	4.7	12.95	18.34	4.13	2.01	8.04	4.39
Merged-chr11-29172846-3	chr11	29172744	29172944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-63.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	144.56	100.11	100.4	129.51	148.91	128.56	114.27	116.69	138.47	132.05	198.48	83.64
Merged-chr19-56774540-3	chr19	56774386	56774586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39197.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	75.91	41.25	88.42	90.9	98.18	59.89	99.32	146.22	46.03	33.14	103.01	42.29
Merged-chr10-44003866-3	chr10	44003779	44003979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172393, exon 1 of 20)	exon (NM_172393, exon 1 of 20)	967.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	40.38	37.23	43.93	20.91	37.23	38.88	19.93	26.33	32.65	30.63	43.21	29.76
Merged-chr6-131247428-3	chr6	131247337	131247537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170851)	promoter-TSS (NM_001170851)	-75.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	78.34	54.33	132.92	76.42	92.46	97.21	62.78	107.8	91.46	87.87	92.96	46.99
Merged-chr16-38396328-3	chr16	38396232	38396432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134102, exon 11 of 11)	3' UTR (NM_134102, exon 11 of 11)	34142.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	121.95	93.07	75.3	100.15	144.41	166.19	103.64	135.37	116.05	145.11	136.68	58.89
Merged-chr10-111004328-3	chr10	111004228	111004428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359624, intron 1 of 16)	MTE2a|LTR|ERVL-MaLR	5681.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	27.05	23.9	30.8	22.52	15.96	25.4	21.59	32.24	29.5	24.6	29.65	13.47
Merged-chr7-24462432-3	chr7	24462346	24462546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-37.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	26.25	19.37	21.11	30.57	40.5	48.92	25.91	37.85	36.98	41.17	51.25	31.95
Merged-chr1-149841082-3	chr1	149841001	149841201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	81338.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	58.95	35.21	49.63	36.2	69.96	88.43	57.47	74.1	106.01	83.35	102.0	58.27
Merged-chr16-22121381-3	chr16	22121294	22121494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	L1MA5|LINE|L1	41905.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	18.57	17.36	32.52	16.49	15.14	36.69	20.59	42.14	55.86	28.62	40.7	46.68
Merged-chr14-70054352-3	chr14	70054258	70054458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-23087.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	35.13	44.27	86.14	41.43	65.87	99.4	76.73	66.73	72.38	76.32	110.55	53.26
Merged-chr17-44459201-3	chr17	44459105	44459305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270633.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	31.5	50.56	49.06	27.75	65.87	85.92	63.78	55.09	92.84	101.43	64.82	38.85
Merged-chr15-102331751-3	chr15	102331633	102331833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021713)	promoter-TSS (NM_021713)	24.0	NM_021713	60315.0	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	30.69	28.17	26.24	26.95	37.23	42.96	28.9	32.78	46.81	41.67	55.78	35.09
Merged-chr4-59000799-3	chr4	59000685	59000885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2408.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	18.57	26.91	37.65	30.57	21.68	52.05	18.6	18.7	44.65	52.22	47.74	23.18
Merged-chr11-70803893-3	chr11	70803795	70803995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	8666.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	43.61	37.98	53.62	41.02	43.77	61.77	35.54	51.9	47.21	30.13	41.71	26.94
Merged-chr15-100678740-3	chr15	100678650	100678850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	9170.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	31.9	32.45	49.63	40.62	40.5	40.14	34.55	45.0	55.66	49.71	62.31	36.03
Merged-chr9-108809464-3	chr9	108809375	108809575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030729, intron 1 of 12)	ERVB4_1C-LTR_Mm|LTR|ERVK	1095.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	28.67	19.37	29.66	21.72	18.82	21.64	26.57	21.64	24.19	27.62	45.22	24.75
Merged-chr1-192537375-3	chr1	192537291	192537491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 11 of 11)	ORR1D2|LTR|ERVL-MaLR	233828.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	35.94	21.13	41.07	53.89	47.05	44.21	55.14	71.36	31.86	31.63	53.26	29.76
Merged-chr4-149504944-3	chr4	149504843	149505043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13298.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	23.02	13.58	30.8	20.91	22.91	17.87	15.28	28.71	17.51	16.57	32.66	19.74
Merged-chr14-48459091-3	chr14	48458983	48459183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12731.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	62.59	55.84	64.46	67.57	63.41	49.86	51.49	90.93	84.38	53.73	92.96	35.71
Merged-chr19-44295964-3	chr19	44295856	44296056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	2280.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	33.11	20.63	22.82	24.13	47.05	36.37	20.59	31.82	39.34	35.65	39.19	25.06
Merged-chr10-118869282-5	chr10	118869181	118869381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-378.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	90.45	102.62	117.51	88.48	103.5	137.66	76.73	92.94	136.3	140.09	170.34	88.65
Merged-chr18-46576439-3	chr18	46576335	46576535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1902.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	44.01	29.68	42.78	26.55	54.0	59.27	35.87	49.74	49.57	55.73	47.74	31.01
Merged-chr4-12089365-3	chr4	12089243	12089443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356563)	promoter-TSS (NM_001356563)	-27.0	NM_001356563	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	60.97	54.08	58.76	65.16	72.41	85.29	49.16	97.57	118.01	92.89	148.23	74.56
Merged-chr14-103099723-3	chr14	103099612	103099812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-146.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	162.73	196.44	158.02	167.72	157.5	261.52	141.84	181.21	225.99	243.02	264.81	79.57
Merged-chr1-86526537-3	chr1	86526444	86526644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360831)	promoter-TSS (NM_001360831)	-13.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	242.28	255.55	270.97	208.74	294.15	306.05	214.58	279.79	255.5	290.22	345.21	170.1
Merged-chr3-123267355-3	chr3	123267222	123267422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-174.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	74.7	70.18	58.19	82.05	83.46	87.17	73.41	63.0	108.38	103.43	133.66	81.45
Merged-chr9-70838682-3	chr9	70838574	70838774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96134.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	109.43	90.8	107.25	100.55	110.46	155.85	95.0	103.85	131.39	109.96	176.87	72.99
Merged-chr14-104027266-3	chr14	104027192	104027392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045953)	promoter-TSS (NR_045953)	-150.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	25.44	14.84	29.09	23.73	36.82	53.31	30.23	65.41	47.21	46.7	65.83	26.94
Merged-chr5-125390123-3	chr5	125390044	125390244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-127.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	77.93	58.86	70.74	54.3	74.05	99.09	55.47	51.62	130.6	148.12	210.04	72.05
Merged-chr18-82693020-3	chr18	82692930	82693130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177832)	promoter-TSS (NM_177832)	-296.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	27.46	27.67	29.09	45.45	25.77	25.4	34.21	32.78	28.91	20.08	26.63	25.69
Merged-chr11-116853294-3	chr11	116853177	116853377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-183.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	111.04	123.75	81.0	90.9	71.59	94.39	51.49	51.28	161.48	170.72	141.2	101.19
Merged-chr17-46890587-3	chr17	46890486	46890686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-35.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	116.7	132.81	122.65	113.82	119.46	176.86	91.68	115.91	153.42	165.69	160.79	106.2
Merged-chr17-34632504-3	chr17	34632414	34632614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030890)	TTS (NM_030890)	2828.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	52.9	48.29	37.08	56.31	129.28	113.2	79.72	83.86	102.08	168.71	170.84	72.68
Merged-chr10-59222711-3	chr10	59222587	59222787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	765.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	27.46	44.02	21.11	15.28	9.41	29.79	28.23	9.73	35.4	34.65	40.2	14.41
Merged-chr6-136654639-3	chr6	136654559	136654759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7234.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	80.76	62.63	93.55	102.96	67.5	47.04	72.75	79.65	72.58	66.28	73.86	63.59
Merged-chr10-75860032-5	chr10	75859867	75860067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010798, intron 1 of 2)	CpG-1170	283.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	24.23	28.67	15.97	26.95	27.82	22.89	18.6	17.8	51.53	54.23	59.8	43.23
Merged-chr4-118428076-3	chr4	118427991	118428191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019422)	promoter-TSS (NM_019422)	-2.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	134.87	128.03	153.45	167.72	167.32	184.69	157.45	163.32	216.95	200.34	268.83	132.83
Merged-chr4-136144834-3	chr4	136144751	136144951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008321, intron 2 of 2)	CpG-10505	1029.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	67.84	70.68	63.32	52.69	53.59	105.99	62.12	50.02	87.53	123.02	95.47	61.09
Merged-chr9-57076191-3	chr9	57076053	57076253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011378)	promoter-TSS (NM_011378)	-104.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	216.84	222.1	224.19	239.31	285.15	272.81	210.6	223.54	316.67	317.33	357.77	175.74
Merged-chr9-108201323-3	chr9	108201216	108201416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10933.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	121.14	135.57	101.54	135.14	132.55	192.85	79.39	113.38	154.01	169.71	188.93	108.08
Merged-chr16-97536000-3	chr16	97535921	97536121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-60.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	70.26	74.7	62.75	69.58	52.77	66.79	33.55	60.14	57.83	65.27	77.88	51.06
Merged-chr11-71019460-3	chr11	71019344	71019544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291147)	promoter-TSS (NM_001291147)	-141.0	NM_033562	116891.0	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	222.9	235.93	250.43	234.08	262.24	341.48	204.62	201.9	264.74	324.36	289.43	156.01
Merged-chr1-58722568-3	chr1	58722359	58722559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-8093.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	30.69	33.7	31.38	16.89	31.5	63.03	22.92	23.52	44.65	42.18	28.64	11.9
Merged-chr7-98178246-3	chr7	98178136	98178336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	38.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	61.38	62.38	60.47	52.29	56.46	68.36	34.55	44.47	56.84	65.27	56.78	39.16
Merged-chr17-88551188-3	chr17	88551089	88551289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21065.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	56.53	52.82	43.93	55.91	51.14	71.49	37.54	43.96	80.64	84.35	95.47	49.18
Merged-chr1-179668179-3	chr1	179668077	179668277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178653)	promoter-TSS (NM_178653)	-54.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	28.27	27.67	34.23	39.82	32.32	35.43	17.61	45.62	35.99	37.66	46.23	26.63
Merged-chr16-20097520-3	chr16	20097420	20097620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029436)	promoter-TSS (NM_029436)	-34.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	92.47	71.69	103.25	84.06	68.32	111.32	76.07	84.42	108.77	117.99	160.79	84.27
Merged-chr1-123934135-3	chr1	123934036	123934236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111423.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	41.19	28.42	46.78	51.48	51.55	55.82	44.84	58.21	65.5	58.24	63.82	36.03
Merged-chr11-3427844-3	chr11	3427760	3427960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290473, intron 2 of 5)	intron (NM_001290473, intron 2 of 5)	-18622.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	21.4	18.61	17.11	27.35	20.86	34.18	23.92	33.34	31.27	22.59	33.67	20.05
Merged-chr4-107367942-4	chr4	107367829	107368029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028355, exon 1 of 18)	5' UTR (NM_028355, exon 1 of 18)	145.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	27.46	17.61	20.54	29.36	24.96	30.1	28.57	23.8	21.64	30.13	28.64	23.18
Merged-chr11-106216434-3	chr11	106216333	106216533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-66.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	119.12	103.38	104.39	88.89	117.41	131.39	62.12	95.44	112.7	99.42	109.04	64.53
Merged-chr16-55757327-3	chr16	55757232	55757432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64806.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	56.13	49.55	66.17	46.66	66.27	56.44	52.82	57.08	79.07	67.28	63.31	34.46
Merged-chr1-152025429-3	chr1	152025315	152025515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	64905.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	37.15	26.66	30.8	22.52	29.46	37.32	25.58	27.53	57.04	20.59	34.67	19.11
Merged-chr2-25549634-3	chr2	25549542	25549742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2702.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	34.73	55.84	63.89	11.66	16.36	31.04	12.95	4.32	77.89	75.82	40.2	25.37
Merged-chr11-100472796-3	chr11	100472695	100472895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-13.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	36.75	37.48	29.66	37.81	33.14	57.7	13.62	25.79	46.81	33.64	32.16	14.41
Merged-chr7-102249573-3	chr7	102249501	102249701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	517.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	27.86	22.13	35.37	16.09	29.46	50.49	31.56	11.64	47.4	36.15	65.32	19.11
Merged-chr2-167101889-3	chr2	167101804	167102004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36611.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	16.96	21.63	31.38	22.12	37.64	37.63	17.94	28.77	44.25	31.13	42.21	26.63
Merged-chr6-48601993-3	chr6	48601910	48602110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8127.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	79.55	55.08	79.29	55.91	97.78	118.84	74.07	126.11	120.18	152.14	174.86	75.81
Merged-chr5-65107465-3	chr5	65107398	65107598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347355)	promoter-TSS (NM_001347355)	-70.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	57.34	62.13	79.29	52.69	63.82	78.08	46.84	47.86	97.95	97.91	86.43	55.76
Merged-chr6-31216728-3	chr6	31216652	31216852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	CpG	1722.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	105.39	126.02	139.19	118.65	135.82	157.41	97.33	127.15	155.58	152.14	188.93	132.83
Merged-chr12-79630396-3	chr12	79630304	79630504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	294329.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	111.04	90.05	118.08	139.56	112.09	121.98	94.67	112.32	104.05	113.98	146.22	75.5
Merged-chr10-117836546-3	chr10	117836449	117836649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	9425.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	22.61	21.88	25.67	20.51	37.23	41.08	21.92	28.91	28.13	29.12	43.21	24.43
Merged-chr5-123376824-3	chr5	123376743	123376943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17955.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	79.55	64.39	49.63	47.06	62.18	83.1	45.84	44.72	91.26	55.23	54.77	40.1
Merged-chr7-16018459-6	chr7	16018351	16018551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-18956.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	28.27	23.14	31.38	45.05	20.86	30.42	25.91	22.91	23.6	11.05	16.08	13.78
Merged-chr2-102739030-3	chr2	102738926	102739126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 3 of 10)	intron (NM_001077514, intron 3 of 10)	7734.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	50.88	67.91	46.78	28.15	47.87	91.56	21.26	20.07	53.7	60.75	40.7	14.1
Merged-chr10-88417840-3	chr10	88417712	88417912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	38400.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	35.94	30.69	37.65	34.19	47.46	26.03	38.86	45.84	41.89	51.21	67.33	32.58
Merged-chr14-66219026-3	chr14	66218942	66219142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-5218.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	58.55	56.85	78.72	60.33	65.87	80.27	54.14	76.88	73.36	49.71	63.31	53.26
Merged-chr1-34028945-3	chr1	34028841	34029041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134448, intron 1 of 97)	L1MEc|LINE|L1	17116.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	81.57	61.12	81.58	52.29	66.68	83.72	38.86	66.48	73.95	81.84	93.46	46.68
Merged-chr15-25413623-3	chr15	25413532	25413732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027376)	promoter-TSS (NR_027376)	132.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	20.59	15.59	31.95	29.76	30.27	24.77	36.54	27.14	26.95	37.16	30.65	20.05
Merged-chr17-35777198-3	chr17	35777071	35777271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4721.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	42.4	23.14	46.78	49.07	62.59	73.06	82.05	68.44	83.59	107.95	154.26	86.15
Merged-chr2-94158140-3	chr2	94158027	94158227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-218.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	338.78	349.62	366.8	394.16	349.78	447.78	378.34	425.58	514.73	464.95	659.76	286.33
Merged-chr11-114725193-3	chr11	114725082	114725282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2230.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	44.82	38.48	29.09	18.5	26.59	67.1	20.93	17.58	44.45	56.74	24.62	22.56
Merged-chr15-51865538-3	chr15	51865435	51865635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-74.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	125.98	95.08	107.82	106.58	126.82	169.96	100.98	139.21	177.41	171.72	215.06	94.61
Merged-chrX-155215562-2	chrX	155215447	155215647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291865, intron 3 of 6)	intron (NM_001291865, intron 3 of 6)	902.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	19.38	25.4	9.7	19.71	25.36	37.94	9.3	21.79	16.52	28.62	9.55	5.64
Merged-chr10-118096330-3	chr10	118096226	118096426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45461.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	45.63	24.65	90.13	44.64	78.14	71.81	92.01	109.74	103.06	101.93	192.45	86.46
Merged-chr4-119541949-3	chr4	119541836	119542036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357177)	promoter-TSS (NM_001357177)	-400.0	NM_001357177	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	28.27	35.97	69.03	43.44	39.68	35.43	40.19	56.52	59.79	45.69	48.74	27.25
Merged-chr11-50224615-3	chr11	50224500	50224700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-735.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	70.66	58.35	66.74	71.59	88.37	66.16	57.13	92.19	77.3	72.81	88.94	50.12
Merged-chr7-97136624-3	chr7	97136536	97136736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	54885.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	17.77	15.09	35.37	39.42	31.5	22.89	27.57	63.0	63.92	62.76	104.01	45.74
Merged-chr10-80115620-3	chr10	80115495	80115695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011492)	promoter-TSS (NM_011492)	-208.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	194.63	185.12	202.51	205.52	224.6	299.15	193.66	226.01	309.19	344.95	357.27	182.63
Merged-chr13-56352649-3	chr13	56352604	56352804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10196.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	22.61	20.37	17.11	23.33	31.09	24.15	33.88	25.74	17.11	31.63	23.62	17.54
Merged-chr10-52417460-3	chr10	52417361	52417561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-86.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	200.28	218.58	219.06	221.21	279.01	234.55	169.41	269.38	252.94	230.47	357.77	164.78
Merged-chr6-140766541-3	chr6	140766429	140766629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139644.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	22.21	21.13	20.54	26.14	24.96	28.85	18.27	31.68	42.29	36.15	40.2	28.82
Merged-chr5-92499675-3	chr5	92499564	92499764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	5993.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	48.86	53.83	57.05	53.89	78.55	71.49	99.32	72.39	64.12	45.69	82.91	39.78
Merged-chr12-99562503-3	chr12	99562401	99562601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1340.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	18.17	22.89	18.25	29.76	29.05	21.01	21.59	22.26	19.08	25.11	28.64	10.02
Merged-chr13-107101165-3	chr13	107101065	107101265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78595.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	30.28	26.41	44.5	32.58	38.86	26.97	14.95	35.44	45.63	45.69	45.73	22.87
Merged-chr16-21246069-3	chr16	21245962	21246162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10004.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	55.32	53.58	55.9	65.16	49.5	52.05	35.54	42.81	49.17	42.68	63.82	24.75
Merged-chr8-79058695-3	chr8	79058611	79058811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	30274.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	29.48	12.32	23.39	16.09	36.82	23.52	25.24	46.18	13.37	1.51	15.58	3.45
Merged-chr17-87975578-2	chr17	87975490	87975690	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010830, intron 1 of 9)	CpG	540.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	9.69	17.61	6.85	17.29	24.14	10.03	8.64	17.41	21.64	15.06	24.62	15.66
Merged-chr12-98259453-3	chr12	98259358	98259558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	1.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	94.49	83.51	74.73	65.96	80.59	99.4	55.14	70.6	119.19	126.03	168.33	60.15
Merged-chr2-166805494-3	chr2	166805396	166805596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-85.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	95.7	79.23	70.74	64.75	85.09	102.85	64.77	66.36	108.97	124.52	117.08	59.52
Merged-chr9-121857754-3	chr9	121857669	121857869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357839)	promoter-TSS (NM_001357839)	27.0	NM_001357841	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	100.95	113.19	88.42	101.76	110.87	96.89	133.86	84.42	113.49	139.59	154.26	89.59
Merged-chr4-24585060-3	chr4	24584959	24585159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149739, intron 17 of 24)	intron (NR_149739, intron 17 of 24)	88608.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	6.86	13.58	13.69	20.51	19.23	14.11	14.28	22.57	17.51	24.6	28.64	14.41
Merged-chr1-46832158-3	chr1	46832064	46832264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356416, intron 4 of 10)	intron (NM_001356416, intron 4 of 10)	21454.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	23.42	27.92	29.66	39.01	27.82	18.81	22.26	31.63	44.65	41.17	65.32	32.89
Merged-chr16-57181350-3	chr16	57181201	57181401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-13969.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	96.51	75.96	68.45	82.45	96.96	114.14	75.4	80.38	127.26	109.46	153.76	61.71
Merged-chr11-5762318-3	chr11	5762229	5762429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	47.0	NM_001361588	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	57.74	82.25	69.03	94.11	70.77	71.18	85.04	61.37	87.53	112.97	87.93	70.48
Merged-chr10-100015751-3	chr10	100015662	100015862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-59.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	40.38	38.23	40.5	28.56	44.18	38.57	18.6	41.97	33.44	41.17	39.7	13.78
Merged-chr1-36508414-3	chr1	36508323	36508523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_033570, exon 7 of 7)	3' UTR (NM_033570, exon 7 of 7)	-3444.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	56.53	34.46	43.35	44.24	49.09	42.02	42.19	50.5	35.21	20.59	54.77	29.13
Merged-chr3-94482984-3	chr3	94482882	94483082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110353, intron 1 of 11)	intron (NR_110353, intron 1 of 11)	260.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	32.71	14.59	31.38	21.32	55.23	41.08	35.54	50.75	24.98	25.11	29.65	22.87
Merged-chr2-38287291-3	chr2	38287191	38287391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146122)	promoter-TSS (NM_146122)	93.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	98.12	90.55	107.82	118.25	91.64	103.17	110.61	92.72	107.0	100.42	136.68	68.29
Merged-chr18-34506885-3	chr18	34506787	34506987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-64.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	90.85	68.42	73.02	69.18	98.59	106.3	45.51	92.27	98.34	106.45	168.33	62.97
Merged-chr17-24037457-3	chr17	24037356	24037556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175440)	promoter-TSS (NM_175440)	-787.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	20.19	17.61	14.83	13.67	21.68	37.94	13.29	28.54	23.6	15.57	27.13	23.81
Merged-chr2-156992137-3	chr2	156992032	156992232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013865)	promoter-TSS (NM_013865)	-21.0	NM_180956	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	83.18	95.33	66.17	92.51	115.37	121.35	66.1	81.9	119.78	108.45	114.06	86.77
Merged-chr13-45006050-3	chr13	45005930	45006130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3934.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	93.68	74.96	86.71	78.43	87.55	90.62	65.44	101.38	56.65	55.73	78.89	52.32
Merged-chr5-117872738-3	chr5	117872617	117872817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5878.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	52.49	67.41	109.53	58.32	101.05	131.07	94.0	91.26	123.91	151.64	133.66	62.03
Merged-chr8-120538857-3	chr8	120538743	120538943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106159)	TTS (NR_106159)	147.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	17.77	19.87	22.82	19.71	36.41	27.91	36.21	33.42	34.81	33.14	37.69	24.75
Merged-chr2-156312581-3	chr2	156312488	156312688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001316755, exon 1 of 10)	exon (NM_001316755, exon 1 of 10)	115.0	NM_001316755	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	62.18	57.35	45.64	42.63	49.5	103.79	41.85	52.6	88.51	89.37	68.84	51.69
Merged-chr8-71668292-3	chr8	71668183	71668383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	3474.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	38.36	29.68	30.8	37.4	56.05	70.55	34.88	47.61	60.97	62.76	124.62	54.51
Merged-chr17-31564835-2	chr17	31564756	31564956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	83.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	80.76	83.0	79.86	87.68	101.87	114.77	68.1	81.81	133.94	131.55	174.86	59.21
Merged-chr2-19300481-3	chr2	19300377	19300577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271564, exon 17 of 19)	exon (NM_001271564, exon 17 of 19)	-43840.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	55.32	47.04	39.36	53.89	72.41	58.95	58.46	70.77	89.3	52.22	79.89	56.39
Merged-chr4-47474490-4	chr4	47474354	47474554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019998)	promoter-TSS (NM_019998)	-87.0	NM_019998	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	41.99	48.54	43.35	45.45	37.64	51.43	42.52	31.57	52.52	64.27	55.27	31.01
Merged-chr16-97922555-3	chr16	97922456	97922656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174847)	promoter-TSS (NM_174847)	77.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	99.33	94.57	90.7	135.14	138.69	120.1	130.54	136.18	96.18	122.51	163.31	85.52
Merged-chr3-8981864-3	chr3	8981768	8981968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17722.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	27.05	19.12	29.09	36.6	56.87	27.91	37.87	61.85	60.97	65.78	121.6	57.95
Merged-chr10-127041987-3	chr10	127041890	127042090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	58.0	NM_010792	17299.0	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	38.76	26.66	22.82	20.11	27.41	39.51	30.89	27.53	28.13	37.66	25.63	21.62
Merged-chr13-97190579-3	chr13	97190493	97190693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010422, intron 3 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	7764.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	77.53	90.3	58.76	63.15	33.14	34.49	19.6	32.72	40.12	40.67	30.65	50.75
Merged-chr12-85701023-3	chr12	85700901	85701101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	14281.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	21.4	22.39	39.93	40.22	42.55	49.86	48.16	56.58	23.01	24.6	24.62	18.17
Merged-chr10-59951961-3	chr10	59951893	59952093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-223.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	165.56	144.38	183.69	179.38	162.0	209.47	155.79	212.66	215.57	191.3	285.41	127.19
Merged-chrUn_JH584304-48567-1	chrUn_JH584304	48467	48667	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11122.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	27.54	24.1	29.65	38.53
Merged-chr11-100571259-3	chr11	100571149	100571349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-3690.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	23.42	19.37	41.64	22.93	39.27	24.15	20.26	22.65	29.31	33.64	29.65	25.37
Merged-chr6-122570985-3	chr6	122570912	122571112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17203.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	67.03	55.84	50.77	63.55	103.5	97.83	101.31	94.01	86.35	92.89	80.9	64.85
Merged-chr14-76179580-3	chr14	76179501	76179701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68710.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	137.69	157.96	189.39	188.63	133.37	182.5	137.85	168.03	143.98	122.51	194.96	79.57
Merged-chr4-136123583-3	chr4	136123484	136123684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20238.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	42.8	36.47	37.08	24.94	58.91	81.22	26.24	51.11	62.35	84.86	71.86	43.86
Merged-chr15-95900056-3	chr15	95899952	95900152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-69980.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	20.59	30.43	39.36	19.71	42.96	40.45	30.89	43.23	55.27	32.13	51.76	27.57
Merged-chr7-104369936-3	chr7	104369838	104370038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11292.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	55.72	48.29	58.19	58.72	58.91	46.41	40.19	54.67	97.16	59.25	74.87	45.74
Merged-chr7-128461352-2	chr7	128461245	128461445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009383, exon 1 of 12)	5' UTR (NM_009383, exon 1 of 12)	168.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	15.34	23.39	26.81	25.34	19.23	25.71	25.24	17.86	34.42	42.18	47.74	33.83
Merged-chr1-182282746-3	chr1	182282632	182282832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	69.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	55.32	60.37	56.48	64.35	53.59	75.26	43.18	50.78	77.69	75.82	69.85	48.56
Merged-chr3-87561743-3	chr3	87561650	87561850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36172.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	36.34	27.92	29.66	32.18	27.82	44.21	16.61	26.75	28.52	35.15	40.7	23.49
Merged-chr10-60744732-1	chr10	60744632	60744832	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	8050.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	10.09	5.53	5.7	2.41	14.73	9.41	4.32	11.5	6.88	4.52	16.08	4.39
Merged-chr6-131388481-3	chr6	131388439	131388639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139117)	promoter-TSS (NM_139117)	-89.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	31.5	24.4	41.64	40.22	22.5	33.87	27.9	53.38	30.49	27.11	44.72	27.25
Merged-chr2-144245704-3	chr2	144245627	144245827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20475.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	52.49	41.0	55.33	58.72	60.14	47.35	46.5	77.94	44.65	64.27	82.91	46.68
Merged-chr6-97456431-3	chr6	97456327	97456527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2859.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	78.34	52.07	107.82	107.79	101.05	111.95	115.6	140.89	93.23	93.39	120.6	62.97
Merged-chr13-113869426-3	chr13	113869322	113869522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74914.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	19.79	18.86	21.11	37.0	29.86	41.39	34.55	56.44	37.37	30.63	62.31	27.57
Merged-chr4-87943172-3	chr4	87943081	87943281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	90226.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	29.48	28.93	32.52	33.78	23.73	15.05	24.58	43.82	40.12	21.59	45.22	31.95
Merged-chr4-134653054-3	chr4	134652954	134653154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 1 of 11)	L2b|LINE|L2	51236.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	17.36	21.13	33.66	25.74	30.27	27.59	21.59	33.95	23.6	17.57	30.15	26.0
Merged-chr7-97906107-1	chr7	97906007	97906207	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357362, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-13851.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0.0	0.5	0.0	1.61	5.73	0.0	0.0	0.0	19.87	15.57	26.63	17.23
Merged-chr16-75909286-3	chr16	75909143	75909343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023380)	promoter-TSS (NM_023380)	23.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	49.26	61.12	59.33	68.37	81.0	116.96	62.45	99.28	98.93	94.9	158.78	73.62
Merged-chr3-106721715-3	chr3	106721616	106721816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039488)	promoter-TSS (NM_001039488)	34.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	197.05	195.19	211.07	176.57	196.78	248.66	159.77	168.53	241.93	274.15	325.61	157.26
Merged-chr14-60636331-3	chr14	60636237	60636437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	1632.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	35.94	29.18	38.22	47.06	36.0	25.71	36.21	48.06	40.12	50.71	49.75	39.78
Merged-chr13-99287393-3	chr13	99287281	99287481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57297.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	42.4	33.96	47.92	53.89	45.0	31.36	30.89	46.23	39.93	34.65	37.18	31.01
Merged-chr7-6174636-3	chr7	6174535	6174735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146024, intron 2 of 4)	B2_Mm2|SINE|B2	2122.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	30.69	22.39	19.97	35.8	26.18	37.32	23.25	13.15	31.86	35.65	23.62	24.43
Merged-chr18-20784881-3	chr18	20784791	20784991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38487.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	60.17	60.12	58.19	43.44	82.64	107.24	56.14	57.36	102.47	73.31	109.54	31.95
Merged-chr10-51459780-3	chr10	51459648	51459848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20864.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	25.44	14.84	28.52	18.9	44.59	58.64	35.21	40.09	48.78	50.21	46.73	30.7
Merged-chr19-53141441-3	chr19	53141341	53141541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164101, intron 1 of 13)	intron (NM_001164101, intron 1 of 13)	998.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	19.38	13.58	22.25	18.9	22.5	14.11	21.92	33.22	23.41	33.14	31.15	25.06
Merged-chr17-35870397-3	chr17	35870273	35870473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3758.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	62.59	54.58	45.07	55.91	68.32	52.68	59.13	65.83	64.32	62.76	64.82	36.03
Merged-chr10-127604736-3	chr10	127604646	127604846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16402.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	174.84	163.24	242.44	238.91	235.64	289.11	249.46	292.6	215.18	227.96	318.57	173.24
Merged-chr17-21962685-3	chr17	21962590	21962790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199048)	promoter-TSS (NM_001199048)	131.0	NM_001025373	74670.0	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	29.48	36.72	30.23	45.05	38.86	46.72	47.5	30.9	33.44	33.64	61.81	32.89
Merged-chr12-32774898-3	chr12	32774797	32774997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-45438.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	44.42	42.01	38.79	21.72	40.09	62.4	15.28	25.65	75.92	69.79	49.75	29.45
Merged-chr1-135146769-3	chr1	135146731	135146931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026823)	promoter-TSS (NM_026823)	-3.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	23.02	22.64	16.54	18.5	43.77	33.87	23.58	27.87	43.27	34.65	57.28	14.41
Merged-chr1-135282730-3	chr1	135282625	135282825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1359.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	89.64	75.71	98.12	81.24	96.14	131.07	73.08	99.34	108.18	135.57	132.66	85.21
Merged-chr16-97997192-3	chr16	97997083	97997283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130962)	promoter-TSS (NR_130962)	-132.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	120.73	161.73	158.59	189.84	152.6	161.49	250.79	183.2	158.92	173.73	180.39	125.62
Merged-chrX-105070175-3	chrX	105070070	105070270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015467)	promoter-TSS (NR_015467)	-46.0	NR_015467	71445.0	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	12.92	12.07	15.4	14.88	19.64	14.74	19.27	16.12	26.16	36.65	38.19	27.57
Merged-chr12-32693975-1	chr12	32693875	32694075	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-126360.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.85	4.28	7.42	7.24	15.14	12.86	11.63	8.61	8.46	13.05	12.06	1.25
Merged-chr11-101687935-3	chr11	101687830	101688030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22389.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	42.8	42.26	33.66	37.0	33.55	43.9	29.56	40.51	30.88	39.67	36.18	17.23
Merged-chr4-72379162-3	chr4	72379050	72379250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177906.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	62.99	82.0	141.47	128.3	107.59	103.48	133.53	175.29	117.42	84.35	157.78	57.33
Merged-chr2-166140599-1	chr2	166140499	166140699	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028072, intron 1 of 20)	intron (NM_028072, intron 1 of 20)	14686.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	2.83	2.26	6.85	8.04	11.45	0.63	2.66	11.5	0.59	0.0	3.01	0.63
Merged-chr19-47919831-1	chr19	47919731	47919931	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	10.5	4.78	13.12	8.45	14.32	19.76	2.66	10.51	13.57	14.06	18.59	8.77
Merged-chr5-9161711-3	chr5	9161629	9161829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	47.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	136.08	128.03	123.79	120.26	154.64	171.21	173.39	175.57	214.39	213.9	257.77	115.91
Merged-chr8-106339034-3	chr8	106338930	106339130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1042.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	50.88	40.5	49.06	44.24	51.55	74.63	45.51	55.07	58.61	41.67	70.35	51.06
Merged-chr5-9107474-3	chr5	9107370	9107570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	6733.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	15.34	14.59	10.27	22.12	34.36	35.75	28.9	39.11	31.86	36.15	37.18	25.06
Merged-chr10-44658443-3	chr10	44658354	44658554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-199706.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	35.13	24.4	30.8	29.36	95.32	74.63	80.05	86.38	68.45	57.74	53.26	38.53
Merged-chr13-55362775-3	chr13	55362686	55362886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-3.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	198.67	194.68	196.24	213.97	215.6	266.54	175.72	198.23	215.77	240.51	312.04	151.93
Merged-chr2-130488781-3	chr2	130488675	130488875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	38497.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	32.3	33.2	79.29	51.08	82.64	90.94	69.42	76.32	52.91	43.68	53.77	61.09
Merged-chr9-116174829-1	chr9	116174729	116174929	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	CpG	534.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	25.84	29.68	24.53	24.53	30.68	49.86	21.26	24.36	32.45	55.23	48.24	32.89
Merged-chr15-102247151-3	chr15	102247040	102247240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-640.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	70.26	74.96	76.44	66.36	66.27	80.59	31.89	36.93	99.72	101.93	92.46	37.59
Merged-chr11-79871330-3	chr11	79871242	79871442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91045.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	28.27	34.71	45.07	29.36	51.14	66.48	38.86	53.38	76.91	52.22	74.37	46.99
Merged-chr15-79932748-3	chr15	79932662	79932862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144811)	promoter-TSS (NM_144811)	-116.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	39.17	37.98	45.64	23.73	46.64	49.23	15.94	28.37	41.3	38.16	33.16	29.45
Merged-chr3-104442180-3	chr3	104442105	104442305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69713.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	54.51	44.77	55.9	38.21	101.46	109.75	43.51	78.36	66.09	63.27	89.44	36.03
Merged-chr9-48495333-3	chr9	48495235	48495435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326356)	promoter-TSS (NM_001326356)	-5.0	NR_136937	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	96.1	92.56	83.29	68.78	109.64	117.28	64.11	85.63	126.86	133.06	163.31	66.73
Merged-chr1-171150583-3	chr1	171150523	171150723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	-20.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	62.99	57.6	42.21	51.48	57.68	79.65	37.87	46.6	93.62	72.3	96.48	58.27
Merged-chr5-44212059-3	chr5	44211981	44212181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173764, intron 2 of 13)	ORR1D1|LTR|ERVL-MaLR	14525.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	40.78	46.28	59.9	58.32	31.5	42.65	39.86	68.78	42.88	34.14	56.78	25.06
Merged-chr5-92504435-3	chr5	92504365	92504565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	1192.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	59.76	53.07	54.19	53.89	74.05	78.39	56.47	72.62	99.52	80.34	95.47	57.64
Merged-chr6-118562332-3	chr6	118562235	118562435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081112)	promoter-TSS (NM_001081112)	-79.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	18.57	21.63	29.09	35.8	38.86	35.43	21.92	31.01	26.75	30.13	55.27	24.43
Merged-chr13-55571150-3	chr13	55571050	55571250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	-30.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	35.94	28.93	38.79	29.36	39.27	53.62	29.9	35.83	73.76	45.69	55.78	34.46
Merged-chr9-21287940-4	chr9	21287782	21287982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	87.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	81.97	82.25	68.45	97.73	62.18	110.38	85.37	84.93	86.74	121.01	111.55	69.86
Merged-chr4-10983840-3	chr4	10983754	10983954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23765.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	31.9	25.15	41.07	39.42	17.18	19.44	28.57	21.79	30.29	20.08	38.69	21.3
Merged-chr16-92874232-3	chr16	92874119	92874319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48145.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	38.76	39.74	58.76	49.07	60.96	49.86	31.89	56.13	44.84	35.15	68.84	33.52
Merged-chr6-124901240-3	chr6	124901148	124901348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	10457.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	198.67	199.71	179.69	176.16	180.41	222.32	136.85	165.14	224.03	216.41	222.1	143.79
Merged-chr10-62980252-3	chr10	62980169	62980369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027425)	promoter-TSS (NM_027425)	46.0	NM_027425	70432.0	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	62.18	54.58	38.22	31.37	42.55	79.02	43.85	57.48	71.4	73.81	75.37	48.56
Merged-chr10-30770726-3	chr10	30770626	30770826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32600.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	34.73	28.93	53.62	39.01	54.41	57.07	49.83	78.65	55.27	46.19	51.25	32.89
Merged-chr5-114697106-2	chr5	114696998	114697198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6163.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	31.09	39.99	54.76	25.74	46.64	40.76	19.93	45.14	0.98	4.02	0.0	2.51
Merged-chr3-138531741-3	chr3	138531652	138531852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	4484.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	22.21	22.39	21.11	14.88	17.59	17.25	15.61	23.38	32.45	25.61	38.69	23.49
Merged-chr9-22117179-3	chr9	22117081	22117281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	14.0	NM_001357311	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	47.65	50.56	46.78	54.7	61.37	71.49	35.54	65.83	84.18	69.29	63.31	47.93
Merged-chr3-121841678-3	chr3	121841589	121841789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26387.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	83.18	60.87	99.83	83.26	93.28	89.68	84.7	94.46	141.62	111.97	138.69	86.77
Merged-chr14-74841905-3	chr14	74841793	74841993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	RLTR11A2|LTR|ERVK	105984.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	46.84	18.11	23.96	26.14	35.18	44.21	16.61	26.66	39.73	34.65	49.75	18.8
Merged-chr11-115814876-3	chr11	115814765	115814965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029557, intron 1 of 10)	CpG	126.0	NM_029557	76265.0	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	37.15	30.18	21.11	34.59	18.41	40.76	25.91	14.27	25.18	32.64	25.12	29.45
Merged-chr13-103774303-5	chr13	103774204	103774404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361085, exon 1 of 12)	exon (NM_001361085, exon 1 of 12)	304.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	36.75	53.32	46.78	46.25	56.05	50.17	63.11	39.2	41.11	65.78	63.31	45.74
Merged-chr6-120155642-3	chr6	120155557	120155757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38166.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	49.67	43.51	59.9	46.25	63.41	59.89	39.2	51.42	72.58	60.25	90.45	59.83
Merged-chr6-6955942-3	chr6	6955837	6956037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-81.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	85.6	94.07	109.53	116.24	129.28	118.84	89.69	134.8	164.43	108.96	186.92	79.57
Merged-chr12-85305677-3	chr12	85305579	85305779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145138, intron 19 of 21)	intron (NM_145138, intron 19 of 21)	17088.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	15.75	16.1	20.54	20.51	17.18	17.87	11.29	22.37	32.06	30.13	22.11	22.56
Merged-chr8-39005854-3	chr8	39005739	39005939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	-6.0	NM_030254	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	44.01	27.67	35.94	53.09	54.82	59.27	63.78	62.78	58.02	56.24	94.97	42.6
Merged-chr12-84970913-3	chr12	84970790	84970990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178065)	promoter-TSS (NM_178065)	-4.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	27.05	24.65	41.07	24.13	22.91	20.7	10.96	19.43	40.71	24.1	26.13	18.17
Merged-chr3-127894149-3	chr3	127894056	127894256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	2167.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	21.8	33.45	52.48	30.57	38.46	28.85	33.88	39.67	34.22	17.57	32.16	18.48
Merged-chr14-54733731-3	chr14	54733615	54733815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-21541.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	37.55	27.67	42.78	32.18	29.46	42.96	55.47	59.33	67.46	52.22	98.99	62.34
Merged-chr4-81743965-3	chr4	81743874	81744074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-256961.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	31.09	22.89	14.83	35.39	44.59	29.48	29.9	53.33	47.8	38.16	46.73	31.64
Merged-chr7-45459415-4	chr7	45459290	45459490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010240, intron 1 of 3)	intron (NM_010240, intron 1 of 3)	496.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	112.66	97.59	107.82	77.22	66.68	128.88	52.15	73.01	119.39	134.56	116.07	90.22
Merged-chr15-97767927-3	chr15	97767832	97768032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-266.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	34.73	24.4	30.8	22.52	40.91	33.24	34.88	26.94	24.19	24.6	23.62	21.3
Merged-chr11-75460595-3	chr11	75460471	75460671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-968.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	64.2	59.11	78.15	60.73	62.59	109.75	51.15	73.96	94.02	107.95	113.56	65.79
Merged-chr16-23557442-3	chr16	23557360	23557560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36645.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	65.82	53.58	76.44	101.35	56.05	56.76	52.15	65.47	75.13	84.35	107.53	55.13
Merged-chr11-117946776-3	chr11	117946669	117946869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22597.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	75.11	72.19	114.66	85.67	105.14	117.59	67.43	79.49	70.81	86.36	111.55	55.76
Merged-chr9-109832793-4	chr9	109832675	109832875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018757)	promoter-TSS (NM_018757)	-19.0	NM_018757	54369.0	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	13.33	15.85	20.54	18.5	19.23	18.81	23.92	21.95	29.11	44.69	33.67	20.36
Merged-chr17-73067604-3	chr17	73067485	73067685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40400.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	22.61	19.37	62.18	32.18	42.96	25.4	34.55	55.29	37.17	45.19	63.82	24.43
Merged-chr9-109059704-3	chr9	109059593	109059793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	30.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	58.55	62.13	31.95	37.4	46.23	96.27	44.84	25.26	51.53	71.8	62.31	23.18
Merged-chr19-5849330-3	chr19	5849249	5849449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3869.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	18.17	14.59	26.24	14.48	35.59	22.26	26.24	24.84	33.63	26.11	22.11	23.81
Merged-chr11-32580676-3	chr11	32580574	32580774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	47408.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	43.61	45.02	46.21	44.24	82.23	125.43	55.47	92.22	89.3	76.32	112.56	51.38
Merged-chr9-108808362-3	chr9	108808262	108808462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	-18.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	60.97	55.34	50.77	48.26	76.5	65.54	38.2	49.23	70.02	87.87	74.37	37.59
Merged-chr4-32575391-3	chr4	32575310	32575510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001109661, exon 4 of 5)	exon (NM_001109661, exon 4 of 5)	-3748.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	52.09	37.73	53.05	53.89	50.73	43.27	54.48	79.32	42.09	40.67	80.4	44.48
Merged-chrM-4676-2	chrM	4576	4776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											44316.17	44405.25	50160.25	55154.05	39527.58	48862.17	44274.73	63521.53	0.0	0.0	0.0	0.0
Merged-chrX-109196681-3	chrX	109196588	109196788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037917)	promoter-TSS (NM_001037917)	-68.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	77.53	69.92	91.84	81.24	89.18	97.52	50.49	85.07	78.48	77.32	63.31	35.09
Merged-chr1-64222717-3	chr1	64222657	64222857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101368.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	39.98	22.64	35.94	33.38	30.68	38.26	22.92	34.37	42.88	26.61	28.64	22.56
Merged-chr2-166293160-3	chr2	166293069	166293269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	19261.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	44.01	41.0	50.2	38.61	54.82	74.0	21.26	38.5	45.24	43.68	50.25	32.58
Merged-chr2-154285529-2	chr2	154285414	154285614	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21730.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.81	2.26	6.28	2.82	22.5	15.68	11.96	11.72	19.67	17.57	29.65	6.89
Merged-chr16-76110545-3	chr16	76110402	76110602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12111.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	23.42	25.91	27.38	32.18	29.86	39.51	47.17	48.06	43.47	33.14	38.19	21.62
Merged-chr14-10139494-3	chr14	10139395	10139595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	255400.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	67.03	64.39	81.0	101.76	69.96	77.45	61.12	97.18	89.1	77.32	78.39	72.36
Merged-chr2-164492966-3	chr2	164492871	164493071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026797, exon 4 of 4)	3' UTR (NM_026797, exon 4 of 4)	-4554.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	31.5	28.17	48.49	20.91	37.64	43.59	31.89	33.87	33.24	32.13	30.15	17.54
Merged-chr13-46930523-3	chr13	46930411	46930611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-793.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	33.92	30.43	34.8	45.85	26.59	33.87	29.23	38.72	35.21	38.66	73.36	32.89
Merged-chr7-99407771-3	chr7	99407667	99407867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	26249.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	31.9	23.64	24.53	29.36	38.46	33.24	24.25	41.75	27.34	34.65	47.23	19.11
Merged-chr1-54564134-3	chr1	54564035	54564235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-6451.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	56.94	59.36	58.19	55.5	65.05	101.28	48.16	89.69	87.72	90.88	74.87	49.5
Merged-chr10-83360133-3	chr10	83360022	83360222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-99.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	139.31	149.91	129.49	129.91	137.87	173.72	118.25	140.66	154.6	164.19	205.01	95.23
Merged-chr1-40081241-3	chr1	40081146	40081346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037980, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-3468.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	31.9	25.15	53.62	38.21	25.36	22.26	22.59	33.06	35.21	26.61	38.69	17.54
Merged-chr5-124328004-3	chr5	124327910	124328110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	-38.0	NM_001277867	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	194.23	150.67	192.81	187.02	209.46	253.99	129.21	182.19	206.13	216.91	248.73	148.49
Merged-chr2-132282200-3	chr2	132282090	132282290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	-3749.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	13.73	17.86	29.09	35.39	18.41	21.95	19.27	28.65	19.28	18.08	50.75	25.37
Merged-chr10-22148924-4	chr10	22148880	22149080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001254744, exon 1 of 2)	exon (NM_001254744, exon 1 of 2)	290.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	17.77	12.83	5.13	20.11	16.77	15.99	10.3	4.21	8.65	9.04	14.07	10.96
Merged-chr7-17056195-3	chr7	17056097	17056297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016868, intron 2 of 14)	intron (NM_016868, intron 2 of 14)	482.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	37.15	38.74	52.48	44.64	71.18	56.13	40.19	45.67	72.58	55.23	107.03	33.83
Merged-chr3-149088718-3	chr3	149088616	149088816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134081.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	20.59	25.91	34.23	29.76	18.0	29.79	39.2	45.7	32.65	21.09	55.27	22.87
Merged-chr16-50366780-3	chr16	50366616	50366816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	65673.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	20.19	17.86	19.4	24.13	15.55	20.7	16.28	21.93	25.18	14.56	12.06	9.4
Merged-chr8-13907678-3	chr8	13907528	13907728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347316)	promoter-TSS (NM_001347316)	-111.0	NM_025785	66822.0	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	51.28	35.97	62.18	58.32	51.14	58.95	44.51	57.67	65.69	76.82	60.8	43.86
Merged-chr7-101547910-3	chr7	101547790	101547990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	7912.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	50.88	25.91	31.38	47.46	90.41	137.97	52.48	22.49	152.63	180.26	122.61	63.91
Merged-chr1-51509216-3	chr1	51509117	51509317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151621)	TTS (NR_151621)	-30818.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	34.73	37.73	37.08	20.11	51.96	52.05	26.24	31.46	43.66	28.62	46.73	22.24
Merged-chr10-14475106-3	chr10	14475008	14475208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	69928.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	51.69	21.88	31.38	69.18	55.23	65.22	62.78	70.15	64.91	42.68	79.39	52.94
Merged-chr5-31195996-3	chr5	31195877	31196077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153680, exon 6 of 15)	exon (NM_153680, exon 6 of 15)	2673.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	50.88	53.83	47.35	43.44	59.73	80.59	61.12	48.14	60.58	60.75	85.92	37.59
Merged-chr11-72538304-3	chr11	72538229	72538429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029932, exon 5 of 12)	exon (NM_029932, exon 5 of 12)	11917.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	96.91	81.75	96.41	57.51	70.37	103.17	58.13	66.79	90.28	83.35	82.91	43.54
Merged-chr2-166554121-3	chr2	166554021	166554221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10401.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	33.11	28.17	26.24	33.78	32.73	30.1	32.88	42.39	56.65	42.68	64.82	30.7
Merged-chr4-16169047-3	chr4	16168953	16169153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4943.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	32.71	21.63	23.96	31.77	21.27	13.17	26.57	30.48	43.07	18.58	40.2	15.98
Merged-chr1-177442057-3	chr1	177441976	177442176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355101)	promoter-TSS (NM_001355101)	-275.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	281.45	315.67	343.99	319.35	308.46	296.95	319.22	353.27	333.78	340.43	506.5	208.95
Merged-chr8-95887324-3	chr8	95887211	95887411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	1054.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	35.94	29.43	35.37	44.64	49.5	52.68	19.93	43.88	51.93	42.68	54.77	36.97
Merged-chr4-133911085-3	chr4	133910969	133911169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-23272.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	142.94	133.06	132.35	104.57	137.87	158.67	91.68	111.2	206.92	242.52	271.34	129.69
Merged-chr10-78364282-3	chr10	78364202	78364402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12602.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	98.93	93.82	124.93	129.91	86.73	89.37	74.41	112.82	87.92	64.77	114.06	55.76
Merged-chr8-126592158-3	chr8	126592058	126592258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164598, intron 1 of 1)	intron (NM_001164598, intron 1 of 1)	1278.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	77.53	58.86	99.83	92.91	72.41	125.12	81.05	127.63	135.12	96.91	150.74	79.26
Merged-chr16-21947563-3	chr16	21947471	21947671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025693)	promoter-TSS (NM_025693)	-19.0	NR_037773	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	64.2	55.84	41.07	51.48	70.77	75.26	41.52	72.06	74.15	68.29	93.96	36.03
Merged-chr17-88551680-3	chr17	88551566	88551766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21542.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	72.68	55.34	75.3	78.03	65.05	68.67	61.78	67.32	57.63	65.27	102.0	55.13
Merged-chr11-70092219-3	chr11	70092097	70092297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-447.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	55.72	29.43	65.03	51.88	42.14	48.92	19.93	42.67	57.63	36.65	54.27	46.36
Merged-chr2-150608584-3	chr2	150608475	150608675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-8.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	126.39	116.21	107.82	98.94	118.23	112.26	83.04	117.42	160.5	152.14	176.87	119.04
Merged-chr3-149086281-3	chr3	149086185	149086385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-131650.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	43.21	34.21	58.19	49.07	55.64	38.57	42.52	64.65	50.75	49.21	59.8	44.17
Merged-chr5-138994979-3	chr5	138994897	138995097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008808)	promoter-TSS (NM_008808)	-44.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	33.52	18.86	27.38	26.14	29.46	23.52	24.25	29.1	29.5	36.65	39.7	23.81
Merged-chr2-162931289-3	chr2	162931209	162931409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026499)	promoter-TSS (NM_026499)	-199.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	37.15	69.92	52.48	73.2	63.41	79.02	80.39	54.81	66.48	91.89	79.89	52.63
Merged-chr17-34931251-3	chr17	34931144	34931344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-9.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	205.94	213.3	225.33	193.86	186.14	263.71	147.15	163.94	237.6	243.02	279.38	120.29
Merged-chr6-146671607-3	chr6	146671509	146671709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14391.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	55.72	48.54	57.05	56.31	46.64	62.4	33.88	52.12	24.78	24.1	25.63	15.98
Merged-chr11-74925873-3	chr11	74925783	74925983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013761)	promoter-TSS (NM_013761)	11.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	57.74	44.02	39.36	55.5	43.77	58.64	55.47	39.11	48.78	76.32	48.24	39.16
Merged-chr8-84237238-3	chr8	84237141	84237341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-199.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	195.03	224.36	191.67	198.69	221.73	290.68	157.45	181.29	253.33	291.22	311.54	164.46
Merged-chr8-35971657-2	chr8	35971568	35971768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-88711.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	45.23	47.79	101.54	68.37	44.18	28.85	39.2	48.76	0.0	0.0	0.0	0.63
Merged-chr7-83650854-3	chr7	83650747	83650947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	4648.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	54.51	37.98	43.93	49.47	65.87	46.1	28.57	41.47	46.03	36.15	36.18	19.74
Merged-chrX-36083114-3	chrX	36083024	36083224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28984.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	56.53	63.13	71.88	49.87	81.41	97.52	75.73	65.75	76.91	84.86	104.01	43.23
Merged-chr6-120956969-3	chr6	120956856	120957056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-1888.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	27.05	26.91	44.5	46.66	41.32	36.06	36.54	41.83	45.63	35.15	48.74	35.71
Merged-chr1-191115092-3	chr1	191115022	191115222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16708.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	26.25	28.67	25.67	26.14	34.36	30.1	21.92	31.79	25.96	28.62	24.62	24.12
Merged-chr14-56887083-3	chr14	56887001	56887201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360643, intron 1 of 24)	CpG-4519	258.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	18.57	19.37	18.83	18.9	16.77	15.99	17.61	11.97	35.21	25.61	20.6	23.81
Merged-chr3-126630271-3	chr3	126630188	126630388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33337.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	33.52	41.0	38.22	40.22	38.46	49.54	38.53	48.56	43.27	26.11	50.75	23.81
Merged-chr15-43382632-3	chr15	43382526	43382726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94410.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	37.55	32.7	32.52	40.22	51.55	44.21	25.24	83.94	55.47	27.11	54.27	43.23
Merged-chr17-64615627-3	chr17	64615514	64615714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13965.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	23.42	16.1	23.96	30.16	37.23	33.24	24.58	53.05	42.48	26.11	20.6	22.87
Merged-chr15-59752446-3	chr15	59752349	59752549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42510.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	15.75	15.85	27.95	16.09	33.96	41.08	15.94	36.7	23.8	21.09	56.28	27.57
Merged-chr19-10204773-3	chr19	10204693	10204893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271615)	promoter-TSS (NM_001271615)	591.0	NM_026919	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	50.47	31.69	38.22	39.82	51.14	47.66	37.54	29.83	41.89	31.13	45.73	30.39
Merged-chr18-62189455-3	chr18	62189353	62189553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9353.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	89.64	59.11	86.71	119.05	94.91	96.27	71.42	69.34	70.81	100.92	95.97	54.82
Merged-chr17-26506790-1	chr17	26506690	26506890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013642, intron 3 of 3)	intron (NM_013642, intron 3 of 3)	1682.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	39.17	30.18	27.38	16.09	33.55	30.73	15.94	12.48	36.19	40.67	28.14	12.53
Merged-chr1-191397196-3	chr1	191397059	191397259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-118.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	214.42	204.74	236.74	231.26	209.05	241.76	179.7	213.79	244.29	242.01	375.86	177.62
Merged-chr17-70851231-3	chr17	70851145	70851345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-35.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	98.53	126.27	91.84	81.24	114.96	149.26	100.65	96.73	171.51	169.71	216.57	85.21
Merged-chr5-27195200-3	chr5	27195118	27195318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-66717.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	15.75	13.33	32.52	30.16	24.96	19.44	26.57	38.07	23.8	22.09	38.19	28.19
Merged-chr5-105519298-3	chr5	105519229	105519429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-142.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	60.17	69.42	89.56	51.08	96.55	117.59	55.8	76.35	97.75	79.83	139.19	36.65
Merged-chr19-24271908-4	chr19	24271804	24272004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	8682.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	14.13	26.91	29.66	29.76	18.82	28.85	13.62	20.27	17.9	18.08	23.11	14.72
Merged-chr19-46056500-3	chr19	46056429	46056629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081214)	promoter-TSS (NM_001081214)	-10.0	NM_001346801	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	56.53	64.39	49.06	50.68	68.73	76.51	33.55	52.23	79.46	58.24	62.81	43.86
Merged-chr3-84040140-6	chr3	84040073	84040273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-12.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	34.73	31.19	41.64	39.01	65.05	71.18	44.18	52.21	68.84	85.36	110.55	54.51
Merged-chr8-77423065-3	chr8	77422956	77423156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94000.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	94.89	117.72	130.63	108.59	127.23	112.26	95.33	156.03	118.21	100.42	165.32	78.63
Merged-chr1-149856944-3	chr1	149856860	149857060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 14 of 17)	intron (NM_008869, intron 14 of 17)	65479.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	20.19	17.86	15.97	18.9	15.14	19.13	22.26	21.73	30.09	27.62	33.16	29.13
Merged-chr1-9548023-3	chr1	9547908	9548108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	60.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	97.31	103.38	91.84	72.8	116.59	138.29	78.72	94.91	130.99	124.52	118.08	38.22
Merged-chr7-35027189-3	chr7	35027107	35027307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	29359.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	113.06	78.23	119.23	92.51	158.73	124.8	109.62	145.49	140.24	107.95	133.16	119.98
Merged-chr9-16216442-3	chr9	16216350	16216550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	161781.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	73.89	54.33	51.91	57.51	62.59	61.77	57.13	74.05	70.22	79.33	69.34	36.34
Merged-chr3-100489379-3	chr3	100489269	100489469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-177.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	100.95	81.75	116.94	98.14	149.32	164.63	100.32	140.16	195.7	183.27	227.62	95.86
Merged-chr1-87640519-3	chr1	87640404	87640604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	20192.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	83.18	63.13	77.58	90.49	94.09	96.27	87.03	98.33	92.64	57.24	117.08	68.61
Merged-chr11-62457403-3	chr11	62457314	62457514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-82.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	50.47	36.97	26.81	35.8	45.82	55.82	39.86	37.85	49.37	45.69	55.27	27.88
Merged-chr10-98898183-3	chr10	98898078	98898278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16464.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	79.55	54.58	73.59	68.78	101.05	105.99	61.12	96.59	102.47	97.91	138.69	78.94
Merged-chr9-21463467-3	chr9	21463357	21463557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 2 of 19)	intron (NM_001357721, intron 2 of 19)	33107.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	50.47	30.18	70.74	43.04	74.87	66.79	57.8	88.57	66.68	57.24	57.28	41.04
Merged-chr17-71082121-3	chr17	71082016	71082216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 17 of 36)	intron (NM_001083934, intron 17 of 36)	62559.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	40.38	26.91	51.34	74.41	73.64	39.51	69.76	95.24	59.6	49.21	86.93	57.33
Merged-chr10-41887384-3	chr10	41887283	41887483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-56.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	104.58	97.84	100.97	112.62	87.55	102.85	77.73	90.14	112.7	109.96	158.28	77.06
Merged-chr13-37434233-3	chr13	37434130	37434330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88885.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	29.48	22.39	22.25	24.94	25.77	22.58	13.29	19.85	26.75	20.59	21.61	21.62
Merged-chr8-82398735-3	chr8	82398629	82398829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3857.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	33.11	43.01	37.65	38.21	52.77	47.98	35.21	39.5	79.46	50.21	76.88	25.06
Merged-chr8-84662892-3	chr8	84662763	84662963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-11.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	116.7	110.92	128.92	123.07	91.23	121.98	79.72	81.11	147.32	161.68	147.23	84.9
Merged-chr11-73128640-3	chr11	73128546	73128746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 20 of 30)	B1F|SINE|Alu	9648.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	37.96	36.22	50.2	20.51	23.32	39.82	15.28	17.97	52.12	33.64	27.64	17.86
Merged-chr2-52993395-3	chr2	52993301	52993501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	135533.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	34.32	39.74	51.34	52.69	64.64	47.66	48.16	61.32	47.01	37.66	60.3	26.94
Merged-chr5-88554301-3	chr5	88554204	88554404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023054)	promoter-TSS (NM_023054)	-158.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	170.81	214.8	157.45	215.58	174.69	229.54	169.74	190.43	237.8	210.88	233.15	142.22
Merged-chr11-114168423-1	chr11	114168323	114168523	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29835.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	1.51	0.0	1.61	3.27	10.98	2.66	2.41	56.65	23.1	29.65	25.69
Merged-chr15-27708690-3	chr15	27708603	27708803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27161.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	32.3	20.88	35.37	25.74	45.0	30.73	26.91	28.49	41.89	40.67	51.25	41.66
Merged-chr6-22124735-3	chr6	22124630	22124830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081351, intron 10 of 21)	intron (NM_001081351, intron 10 of 21)	138820.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	35.13	41.75	44.5	35.8	22.5	59.58	31.22	61.01	37.17	33.14	35.68	21.62
Merged-chr9-35282603-3	chr9	35282505	35282705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040715, intron 2 of 4)	intron (NR_040715, intron 2 of 4)	1500.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	31.9	37.73	33.66	37.81	35.59	32.61	20.26	33.34	37.76	37.16	39.19	23.18
Merged-chr16-11014725-3	chr16	11014628	11014828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5830.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	39.57	47.54	86.71	71.59	52.77	40.76	69.09	94.4	72.38	61.26	102.0	67.67
Merged-chr17-4908394-3	chr17	4908302	4908502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-86672.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	61.38	67.41	35.37	60.33	60.55	67.1	38.53	56.27	74.74	72.81	74.37	27.25
Merged-chr15-79209294-3	chr15	79209186	79209386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-19887.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	43.21	30.69	64.46	37.4	35.18	52.05	30.89	42.95	34.03	47.7	57.79	27.88
Merged-chr7-46795804-3	chr7	46795782	46795982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291075)	promoter-TSS (NM_001291075)	-1.0	NM_001005247	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	72.28	63.39	71.88	66.77	63.41	61.77	52.82	50.22	62.35	86.86	58.79	44.48
Merged-chr7-44887130-3	chr7	44887019	44887219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	5305.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	48.05	18.11	34.23	45.45	47.87	43.9	40.52	40.32	40.71	32.13	47.74	31.33
Merged-chrX-20950663-3	chrX	20950542	20950742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007922)	promoter-TSS (NM_007922)	-34.0	NM_007922	13712.0	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding	60.57	62.38	47.92	64.35	81.0	92.82	67.76	95.44	85.95	88.37	107.53	53.57
Merged-chr7-67244110-3	chr7	67243994	67244194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	21478.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	64.2	40.24	55.9	32.58	50.73	97.52	37.2	60.08	65.1	67.28	70.85	57.01
Merged-chr4-83525410-3	chr4	83525300	83525500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-145.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	188.98	196.44	209.36	197.48	209.87	210.41	192.33	251.16	277.53	282.69	336.66	177.62
Merged-chr5-122820965-3	chr5	122820869	122821069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042491, intron 1 of 16)	CpG	373.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	36.75	21.38	26.24	20.51	32.32	43.59	33.22	24.11	30.29	30.63	42.71	26.63
Merged-chr11-88044498-1	chr11	88044398	88044598	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	11.31	4.53	3.99	10.46	0.82	1.25	3.99	4.85	23.01	24.6	25.12	10.34
Merged-chr1-85751692-3	chr1	85751594	85751794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106172)	promoter-TSS (NR_106172)	-254.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	43.61	40.5	64.46	46.66	69.55	50.17	88.69	116.5	63.33	62.26	86.43	62.65
Merged-chr17-10041067-3	chr17	10040960	10041160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-265194.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	49.26	20.12	64.46	78.83	59.73	70.87	79.39	104.55	99.33	90.88	154.76	63.59
Merged-chr2-131491906-3	chr2	131491809	131492009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177836)	promoter-TSS (NM_001177836)	47.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	26.25	37.23	20.54	36.2	27.41	21.01	22.59	33.25	29.9	28.62	32.16	17.54
Merged-chr4-15266121-1	chr4	15266021	15266221	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	301.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	37.15	16.1	35.37	24.13	47.46	35.12	31.22	45.31	49.17	43.68	68.84	24.12
Merged-chr3-108085894-3	chr3	108085783	108085983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-93.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	31.09	32.45	30.23	22.12	42.55	47.35	51.15	39.17	47.8	45.69	50.25	18.48
Merged-chr19-3388809-3	chr19	3388729	3388929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-28.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	92.07	97.59	105.53	65.96	95.32	116.96	76.73	68.41	117.23	123.52	129.14	70.48
Merged-chr12-86800941-3	chr12	86800841	86801041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66572.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	44.42	27.17	26.81	17.29	53.59	52.68	30.89	38.38	50.16	47.2	48.74	32.27
Merged-chr14-30631239-3	chr14	30631128	30631328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5020.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	27.05	25.66	25.67	25.74	34.36	32.93	27.57	31.32	36.39	29.12	42.71	17.54
Merged-chr2-165852686-3	chr2	165852611	165852811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252584, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	5462.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	33.52	30.69	65.03	32.98	42.96	40.45	25.91	40.93	37.17	42.18	60.3	48.24
Merged-chr6-124921746-3	chr6	124921637	124921837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152158, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-3791.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	63.4	50.81	55.9	44.24	54.82	52.05	33.88	47.38	61.37	58.24	59.8	34.15
Merged-chr16-87689424-3	chr16	87689322	87689522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9532.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	19.79	22.13	27.38	23.73	23.73	21.32	16.28	28.18	26.36	18.58	26.63	15.98
Merged-chr6-85370859-3	chr6	85370753	85370953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	3781.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	26.65	18.61	27.95	37.4	33.96	37.63	41.85	65.94	35.99	24.6	37.18	39.16
Merged-chr9-77756289-3	chr9	77756193	77756393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151778, intron 1 of 16)	intron (NR_151778, intron 1 of 16)	1758.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	22.21	18.86	25.1	13.67	21.27	24.15	7.64	18.53	30.09	27.62	39.7	21.3
Merged-chr11-82567537-3	chr11	82567424	82567624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65829.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	29.07	22.13	59.9	43.84	31.5	33.55	32.88	39.73	44.84	37.66	60.8	36.65
Merged-chr9-21031479-3	chr9	21031387	21031587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	-551.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	23.42	34.96	22.25	25.34	14.73	34.81	9.97	23.44	32.26	34.65	29.65	23.81
Merged-chr6-122952612-3	chr6	122952547	122952747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153197)	promoter-TSS (NM_153197)	3.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	90.85	60.87	86.14	101.35	88.37	79.96	95.33	117.51	70.61	80.34	74.87	59.83
Merged-chr17-64616433-3	chr17	64616333	64616533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	14784.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	39.98	38.99	75.87	56.31	89.59	75.26	74.74	122.08	92.25	83.35	111.05	42.92
Merged-chr11-53769938-3	chr11	53769834	53770034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-80.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	163.94	177.33	137.48	109.0	198.01	266.54	128.22	116.66	220.68	222.43	170.34	93.98
Merged-chr4-32657443-1	chr4	32657343	32657543	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081392, intron 1 of 101)	CpG	324.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	12.92	13.83	13.12	18.5	18.41	21.64	14.95	14.94	12.59	19.08	20.6	13.47
Merged-chr1-64925890-3	chr1	64925811	64926011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	30913.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	129.62	88.79	132.35	86.88	132.14	153.96	98.99	152.58	126.86	95.9	127.63	81.76
Merged-chrX-8145780-3	chrX	8145678	8145878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016809, exon 1 of 7)	5' UTR (NM_016809, exon 1 of 7)	102.0	NM_001166410	19652.0	Mm.128512	NM_016809	ENSMUSG00000031167	Rbm3	2600016C11Rik	RNA binding motif (RNP1, RRM) protein 3	protein-coding	34.32	32.45	25.1	31.37	31.09	29.48	25.91	30.59	35.01	48.7	58.79	28.82
Merged-chr12-79130811-3	chr12	79130745	79130945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009705)	promoter-TSS (NM_009705)	57.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	37.96	45.28	24.53	30.57	102.68	123.23	78.72	86.13	78.48	77.83	64.82	29.76
Merged-chr10-99632761-3	chr10	99632681	99632881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	9139.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	39.17	19.37	27.95	39.82	51.55	31.98	26.57	44.55	43.47	43.18	58.79	38.53
Merged-chr12-79625905-3	chr12	79625816	79626016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	298817.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	33.92	38.48	60.47	46.25	39.27	31.36	24.91	32.97	25.77	25.61	42.21	27.25
Merged-chr13-10599459-1	chr13	10599359	10599559	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-238656.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	2.41	0.82	0.94	9.63	13.35	6.88	4.52	5.02	6.89
Merged-chr6-59209490-3	chr6	59209400	59209600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081145, exon 2 of 2)	5' UTR (NM_001081145, exon 2 of 2)	630.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	19.38	23.14	22.82	20.91	22.09	19.13	13.95	21.79	36.58	26.11	33.16	16.92
Merged-chr16-57547439-3	chr16	57547308	57547508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1834.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	22.61	16.85	33.66	48.26	46.23	26.97	79.72	97.12	20.65	26.11	44.72	18.17
Merged-chr10-21827118-3	chr10	21827015	21827215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55069.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	23.82	19.62	18.25	13.67	28.64	16.93	31.56	30.48	36.39	29.12	28.64	15.66
Merged-chr2-146855843-3	chr2	146855754	146855954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-35.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	162.73	136.58	162.01	176.97	209.05	185.95	148.48	222.87	166.0	143.1	225.61	92.73
Merged-chr7-98171552-3	chr7	98171449	98171649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-5645.0	NR_045972	330599.0	Mm.406608	NR_045969		Gm16938	-	predicted gene, 16938	ncRNA	27.86	31.69	48.49	37.4	35.18	52.99	40.19	38.13	45.04	34.65	65.83	43.23
Merged-chr8-71628437-3	chr8	71628337	71628537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	2669.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	28.27	31.94	39.36	32.98	26.18	41.39	26.57	47.22	32.45	29.12	20.1	31.01
Merged-chr17-17448869-3	chr17	17448774	17448974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46188.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	81.97	67.41	73.02	80.04	85.5	114.14	69.09	109.74	115.46	108.96	183.91	74.87
Merged-chr6-135276960-1	chr6	135276860	135277060	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22624.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.81	0.0	9.7	1.21	5.73	3.45	13.29	14.41	0.0	0.5	0.0	0.31
Merged-chr1-171840619-3	chr1	171840516	171840716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001252472, exon 2 of 3)	5' UTR (NM_001252472, exon 2 of 3)	919.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	29.88	24.15	17.11	33.78	30.27	19.44	26.57	20.33	42.48	37.16	42.21	23.49
Merged-chr7-118491973-3	chr7	118491879	118492079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033380)	promoter-TSS (NM_001033380)	-4.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	56.53	48.8	75.87	72.8	72.82	88.74	47.17	90.59	76.71	85.36	86.93	53.26
Merged-chr14-73172701-3	chr14	73172587	73172787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29902.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	167.58	117.72	200.23	153.64	185.73	156.47	209.6	212.08	132.57	164.19	207.53	98.05
Merged-chr15-86168018-3	chr15	86167925	86168125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-17703.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	29.48	24.4	18.25	42.63	41.32	38.57	58.13	75.03	47.8	25.11	61.81	36.34
Merged-chr2-166181223-3	chr2	166181049	166181249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25466.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	38.36	40.5	45.07	50.27	59.32	45.15	57.13	46.51	35.99	50.21	35.17	25.37
Merged-chr12-117517428-3	chr12	117517336	117517536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	957.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	20.19	12.83	14.83	27.75	29.86	47.98	25.58	33.67	65.5	47.7	100.5	40.41
Merged-chr9-110654166-3	chr9	110654067	110654267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-6.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	228.55	213.3	243.58	235.29	235.64	332.39	201.63	238.66	259.43	285.2	383.39	145.36
Merged-chr18-49755617-3	chr18	49755507	49755707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-6.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	245.91	190.16	248.15	231.67	259.37	320.79	252.12	319.32	389.44	341.43	452.74	252.18
Merged-chr16-95728990-3	chr16	95728895	95729095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26588.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	240.26	201.22	235.03	240.52	232.78	297.58	224.88	216.45	278.71	300.26	329.63	174.49
Merged-chr18-11794452-3	chr18	11794378	11794578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44796.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	57.74	56.34	50.2	85.27	75.68	48.6	65.11	83.83	56.06	49.21	75.87	43.23
Merged-chr1-138995361-1	chr1	138995261	138995461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	B4A|SINE|B4	17704.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	7.67	6.04	14.26	16.49	2.05	2.51	0.33	7.35	10.82	1.51	5.02	3.13
Merged-chr13-49187638-3	chr13	49187545	49187745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	98.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	164.75	171.04	166.57	109.4	178.78	282.22	151.14	135.73	216.36	289.71	245.21	116.22
Merged-chr1-106932155-3	chr1	106932061	106932261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	19.79	18.86	39.36	34.59	37.64	26.34	35.54	44.36	36.78	26.61	34.17	20.36
Merged-chr1-128707905-3	chr1	128707820	128708020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115621.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	16.56	28.67	26.24	32.18	31.5	28.54	36.21	68.66	29.31	17.07	30.15	15.04
Merged-chr5-93267593-3	chr5	93267491	93267691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	18.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	41.59	70.18	33.66	46.25	51.55	58.32	45.18	34.74	51.73	64.27	60.3	39.47
Merged-chr3-88579643-3	chr3	88579543	88579743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356316)	promoter-TSS (NM_001356316)	35.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	18.57	17.1	29.66	24.13	34.77	24.46	25.91	25.6	27.14	23.6	24.62	26.0
Merged-chr1-163929952-3	chr1	163929904	163930104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028776, exon 1 of 14)	5' UTR (NM_028776, exon 1 of 14)	239.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	27.86	24.9	16.54	33.78	18.82	25.4	26.91	28.32	34.03	42.18	32.66	27.25
Merged-chr4-3681736-3	chr4	3681634	3681834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3613.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	60.57	54.08	53.62	71.19	49.91	75.88	44.18	57.79	71.99	75.82	68.84	46.36
Merged-chr19-29419631-3	chr19	29419517	29419717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	8698.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	52.49	34.46	78.72	44.24	68.32	69.3	42.52	59.27	63.92	47.7	63.31	40.1
Merged-chr2-128339450-3	chr2	128339359	128339559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	89892.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	25.44	15.09	16.54	23.73	59.73	45.78	47.17	51.28	24.19	23.1	29.14	21.3
Merged-chr7-19629449-3	chr7	19629340	19629540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-2.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	57.34	44.27	49.63	30.16	67.5	72.12	37.87	49.01	70.81	94.4	80.4	48.24
Merged-chr6-67266884-3	chr6	67266735	67266935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-144.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	107.81	125.26	119.8	130.71	139.1	154.28	123.9	178.09	165.22	156.66	224.11	101.19
Merged-chr4-33189377-1	chr4	33189277	33189477	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	360.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	4.04	6.04	8.56	8.85	3.27	5.02	17.27	10.88	6.88	6.03	9.04	3.13
Merged-chr5-113783857-3	chr5	113783761	113783961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11049.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	54.51	49.05	35.37	39.82	39.27	72.12	42.19	35.72	47.8	59.75	54.27	29.13
Merged-chr4-42965532-3	chr4	42965416	42965616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4430.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	25.44	18.61	21.11	25.34	24.55	18.81	11.29	21.7	27.54	27.62	55.78	23.49
Merged-chr1-51501510-3	chr1	51501398	51501598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23099.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	37.96	17.36	35.94	30.16	44.59	36.69	42.85	72.06	36.58	27.62	42.71	33.52
Merged-chr14-54408520-3	chr14	54408414	54408614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001253680, exon 2 of 10)	exon (NM_001253680, exon 2 of 10)	958.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	22.21	19.62	39.36	20.11	27.82	25.4	36.21	38.1	31.47	26.11	28.14	15.04
Merged-chr16-38522721-3	chr16	38522633	38522833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024273)	promoter-TSS (NM_024273)	-70.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	166.77	136.33	165.43	173.35	165.69	196.92	119.58	206.44	202.79	211.89	247.22	154.44
Merged-chr5-64241132-2	chr5	64241027	64241227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	10770.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	30.69	24.15	38.79	32.98	49.91	46.1	45.18	68.97	40.12	34.14	51.76	28.51
Merged-chr11-115165158-3	chr11	115165056	115165256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1815.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	31.9	17.86	26.81	12.07	33.96	22.26	19.93	12.98	21.83	26.61	33.16	11.9
Merged-chr17-23193219-3	chr17	23193123	23193323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	5.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	38.76	34.71	35.37	63.55	58.09	50.8	44.51	65.97	60.38	60.25	101.5	32.89
Merged-chr12-84243626-1	chr12	84243526	84243726	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24745.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.46	5.03	10.27	8.45	16.77	20.38	6.64	14.94	9.44	17.07	22.61	7.83
Merged-chr3-107760264-3	chr3	107760125	107760325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001113530, exon 1 of 9)	5' UTR (NM_001113530, exon 1 of 9)	244.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	42.8	38.48	39.93	27.35	36.0	35.12	35.54	29.97	61.56	64.77	57.28	30.07
Merged-chr12-99967284-3	chr12	99967164	99967364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	2765.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	13.73	16.6	19.97	26.55	27.82	16.31	20.93	36.14	18.88	17.57	26.63	20.99
Merged-chr13-24791508-3	chr13	24791409	24791609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-10148.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	123.56	89.29	182.55	149.62	111.69	126.68	154.79	163.07	136.5	151.13	182.9	102.75
Merged-chr3-145938015-3	chr3	145937966	145938166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356284)	promoter-TSS (NM_001356284)	52.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	96.91	87.28	88.99	87.68	86.32	95.33	97.66	115.96	98.54	101.93	134.67	84.58
Merged-chr4-83269839-3	chr4	83269751	83269951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	54338.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	73.49	62.88	66.74	75.61	73.64	63.34	56.8	88.18	85.17	83.35	119.09	60.77
Merged-chr1-66862892-3	chr1	66862802	66863002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	CpG	407.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	41.19	32.45	46.21	29.76	65.46	74.0	58.79	80.89	68.25	52.22	76.88	38.53
Merged-chr5-135632639-3	chr5	135632548	135632748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	-6.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	86.82	107.4	106.68	109.4	105.14	133.9	66.77	102.39	135.12	147.12	181.9	85.52
Merged-chr13-59769852-3	chr13	59769766	59769966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015349)	promoter-TSS (NR_015349)	-77.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	214.01	207.76	224.76	191.45	209.87	229.85	150.14	191.3	245.47	259.09	286.92	129.07
Merged-chr4-130796127-3	chr4	130796036	130796236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	3599.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	30.28	27.92	65.6	29.36	36.0	35.43	48.5	48.9	35.8	38.66	39.7	49.18
Merged-chr2-156392970-3	chr2	156392881	156393081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-2.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	29.48	22.64	29.09	32.58	25.36	34.49	17.94	11.8	29.31	27.11	32.66	26.31
Merged-chr7-19830914-3	chr7	19830818	19831018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8163.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	117.5	63.13	180.83	114.22	192.28	166.19	170.07	197.5	169.15	134.56	222.1	123.74
Merged-chr1-192136717-3	chr1	192136622	192136822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033536)	promoter-TSS (NR_033536)	-176.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	18.17	13.58	15.97	18.1	25.36	22.89	23.25	30.17	21.83	14.06	47.74	16.92
Merged-chr1-127204970-3	chr1	127204873	127205073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-13.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	27.46	29.18	36.51	34.99	29.86	26.65	18.27	39.67	44.84	31.13	47.74	30.7
Merged-chr8-124021277-3	chr8	124021179	124021379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357315)	promoter-TSS (NM_001357315)	118.0	NM_133966	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	48.05	53.07	55.33	51.48	43.36	82.16	57.13	44.1	73.36	61.26	54.77	52.94
Merged-chr3-38485014-3	chr3	38484907	38485107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-191.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	178.88	225.37	224.19	233.68	242.19	336.15	229.53	269.3	350.89	311.31	430.13	193.29
Merged-chr2-132110908-3	chr2	132110799	132110999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	34209.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	89.24	54.33	70.17	38.21	69.96	111.63	55.8	77.75	83.0	85.86	53.77	56.7
Merged-chr18-36515815-3	chr18	36515717	36515917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-12.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	98.93	107.91	120.37	99.75	93.28	123.55	95.67	110.69	120.77	122.51	128.13	66.73
Merged-chr8-85557324-3	chr8	85557228	85557428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2057.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	28.67	28.42	30.23	23.33	15.96	18.81	16.61	19.91	43.86	34.14	32.66	26.31
Merged-chr8-71630032-3	chr8	71629927	71630127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 41 of 41)	intron (NM_001029873, intron 41 of 41)	1079.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	23.42	24.65	23.96	21.72	36.41	39.2	50.82	48.34	46.62	38.16	39.7	20.05
Merged-chr10-128096824-3	chr10	128096723	128096923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 2 of 29)	CpG	4040.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	27.86	28.17	30.8	23.73	54.0	36.37	31.56	30.56	64.91	52.22	49.24	40.72
Merged-chr15-68362632-3	chr15	68362543	68362743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21354.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	32.71	33.2	25.1	30.97	28.23	26.65	20.93	20.89	48.58	27.62	45.73	23.18
Merged-chr17-27012154-3	chr17	27012065	27012265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5870.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	35.13	27.17	33.09	26.95	34.77	44.53	28.23	31.6	30.49	19.58	45.22	28.19
Merged-chr2-83744518-3	chr2	83744405	83744605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	20108.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	49.26	44.27	73.02	61.13	38.05	43.9	53.15	77.8	39.14	37.16	29.65	22.56
Merged-chr8-83740358-4	chr8	83740339	83740539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	872.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	44.01	53.32	48.49	34.19	46.64	93.76	21.92	23.78	65.69	85.36	73.86	44.48
Merged-chr8-123373749-3	chr8	123373654	123373854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	43.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	124.37	97.09	108.96	69.58	140.73	140.79	60.12	95.66	142.99	137.58	144.21	65.16
Merged-chr9-89256743-3	chr9	89256640	89256840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	45356.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	61.38	67.16	81.0	98.14	110.05	95.33	78.39	89.78	98.15	88.87	89.94	47.93
Merged-chr19-60790742-3	chr19	60790653	60790853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010123)	promoter-TSS (NM_010123)	-60.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	118.31	115.45	112.95	103.37	121.5	147.69	86.03	94.49	123.52	131.05	135.67	49.81
Merged-chr16-23999626-3	chr16	23999489	23999689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10737.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	27.86	28.42	22.82	14.48	12.27	46.1	10.96	8.41	22.03	24.1	14.57	7.83
Merged-chr4-130107514-3	chr4	130107421	130107621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026441)	promoter-TSS (NM_026441)	-35.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	38.36	33.45	55.33	53.49	27.82	56.76	13.95	32.78	63.92	50.21	42.21	35.4
Merged-chr4-126019200-3	chr4	126019100	126019300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5459.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	95.3	89.8	104.39	87.68	95.32	113.83	62.78	82.68	123.32	105.44	123.61	87.4
Merged-chr14-45318705-3	chr14	45318601	45318801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015774)	promoter-TSS (NM_015774)	-129.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	80.76	122.75	81.58	107.39	73.23	127.62	113.27	97.37	72.18	75.32	99.49	66.73
Merged-chr9-99493463-3	chr9	99493377	99493577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	23056.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	58.95	72.44	78.72	45.85	69.96	112.57	70.75	56.07	89.69	93.39	78.89	56.7
Merged-chr15-73621248-1	chr15	73621148	73621348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	3496.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	17.36	15.09	11.41	4.02	17.18	35.43	12.62	7.77	22.82	28.62	22.11	10.02
Merged-chr2-156180408-3	chr2	156180304	156180504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291114)	promoter-TSS (NM_001291114)	-166.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	140.52	144.13	112.95	119.86	171.82	199.12	110.28	119.66	172.3	207.37	166.32	95.55
Merged-chr7-19458872-3	chr7	19458770	19458970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172279)	promoter-TSS (NM_172279)	-376.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	40.78	29.43	28.52	37.81	62.59	46.72	30.89	40.07	43.86	52.72	41.71	20.99
Merged-chr4-133166450-1	chr4	133166350	133166550	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-29205.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.23	1.76	11.41	4.83	4.91	3.76	9.63	15.36	2.16	6.03	2.51	3.13
Merged-chr18-15214466-3	chr18	15214383	15214583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63037.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	36.34	44.02	71.31	59.12	69.55	35.12	34.88	58.12	66.87	46.7	93.46	36.03
Merged-chr17-35861478-5	chr17	35861322	35861522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	104.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	55.72	69.92	40.5	48.26	49.91	69.61	51.82	38.27	51.93	73.31	56.78	43.23
Merged-chr7-44929784-3	chr7	44929677	44929877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-287.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	311.33	314.66	339.99	314.12	340.78	478.51	323.53	364.82	423.27	493.07	562.28	277.87
Merged-chr12-17712914-3	chr12	17712800	17713000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	Eulor9B|DNA|DNA	22091.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	25.84	14.84	22.82	30.16	36.82	38.57	38.53	50.47	36.78	18.08	67.33	41.66
Merged-chr1-86407148-3	chr1	86407056	86407256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17795.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	36.75	20.63	55.9	53.09	73.23	44.53	62.12	115.12	59.01	39.67	88.44	48.24
Merged-chrUn_JH584304-44905-1	chrUn_JH584304	44805	45005	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14784.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	33.24	42.18	45.22	31.64
Merged-chr7-81861287-3	chr7	81861211	81861411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	-1376.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	43.61	23.14	33.09	40.62	52.37	30.1	19.27	38.41	28.91	31.63	32.16	40.72
Merged-chr5-90931234-3	chr5	90931107	90931307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	11.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	73.89	47.29	55.33	69.18	67.09	94.7	43.18	86.13	87.72	92.89	101.5	41.35
Merged-chr2-157448014-2	chr2	157447915	157448115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 2 of 13)	B3A|SINE|B2	23722.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.23	15.85	18.25	0.8	12.68	23.2	11.29	17.24	12.59	7.53	6.03	2.19
Merged-chr1-90975152-3	chr1	90975072	90975272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5552.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	87.62	80.99	99.26	62.34	91.64	114.45	122.24	118.09	78.09	96.4	104.52	43.23
Merged-chr16-44173638-3	chr16	44173525	44173725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029889, intron 1 of 7)	CpG	228.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	21.4	20.88	14.83	22.52	24.96	23.2	17.94	15.5	25.77	17.57	40.2	13.16
Merged-chr4-120854855-3	chr4	120854762	120854962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	63.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	39.98	45.28	28.52	33.38	49.5	59.89	45.84	37.09	67.46	55.23	93.46	37.28
Merged-chr10-12875058-3	chr10	12874942	12875142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13307.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	58.95	68.67	106.1	99.75	104.73	91.25	73.74	97.77	131.98	99.92	146.22	60.77
Merged-chr17-35439064-3	chr17	35438958	35439158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201460)	promoter-TSS (NM_001201460)	-97.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	193.42	208.27	212.21	139.16	191.87	264.97	148.81	121.32	404.59	384.11	346.21	189.84
Merged-chr3-105900906-3	chr3	105900803	105901003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3518.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	32.3	38.23	38.79	42.23	33.55	41.08	24.91	41.83	47.21	26.11	60.8	25.37
Merged-chr2-13537875-1	chr2	13537775	13537975	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	6789.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	3.23	6.79	3.42	3.22	10.23	5.64	4.65	3.14	14.75	8.54	18.09	10.34
Merged-chr5-135686634-3	chr5	135686537	135686737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2508.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	35.94	25.91	63.32	26.14	63.41	73.69	37.54	54.53	54.68	64.27	60.8	23.49
Merged-chr19-5726326-3	chr19	5726218	5726418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053252)	promoter-TSS (NM_053252)	-1.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	29.48	29.93	33.66	24.13	26.59	37.32	15.61	16.29	46.81	42.68	27.13	27.57
Merged-chr17-10390897-3	chr17	10390801	10391001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65315.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	25.44	27.42	31.38	70.79	68.32	43.59	83.71	71.16	65.1	42.68	77.38	41.04
Merged-chr11-119375589-3	chr11	119375488	119375688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 12 of 16)	intron (NM_178743, intron 12 of 16)	-14884.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	39.17	23.64	54.19	24.94	61.77	60.52	42.52	43.93	55.66	53.73	82.91	35.71
Merged-chr8-70282909-3	chr8	70282804	70283004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011984)	promoter-TSS (NM_011984)	-95.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	55.32	61.12	48.49	72.4	61.37	82.16	57.13	81.67	93.03	94.4	109.04	57.95
Merged-chr11-19926129-3	chr11	19926031	19926231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	1689.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	56.13	46.53	23.39	61.94	60.55	59.27	60.46	41.38	42.48	58.75	38.19	47.62
Merged-chr3-138527152-3	chr3	138527043	138527243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-125.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	227.74	233.92	176.84	189.44	225.83	294.76	182.69	169.91	197.08	181.76	185.92	115.6
Merged-chr1-149911265-3	chr1	149911174	149911374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	11165.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	35.53	31.94	46.21	45.05	60.14	47.04	35.87	78.48	58.02	55.73	94.97	45.74
Merged-chr1-53742258-2	chr1	53742154	53742354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35470.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	25.04	42.51	30.23	34.99	0.0	0.63	1.33	1.32	60.58	55.23	74.87	31.64
Merged-chr8-114440092-2	chr8	114439989	114440189	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 1 of 8)	CpG	437.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	17.36	15.09	13.12	14.48	24.55	22.89	15.61	14.44	35.8	28.12	34.17	20.05
Merged-chr3-65516013-3	chr3	65515909	65516109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12438.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	40.78	44.02	36.51	38.61	69.55	69.61	36.87	70.26	66.87	62.26	54.27	28.51
Merged-chr11-88204350-3	chr11	88204242	88204442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-46.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	56.94	51.06	66.17	54.7	56.05	74.63	29.56	37.99	94.8	85.36	85.42	47.3
Merged-chr8-13494488-3	chr8	13494385	13494585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019521)	promoter-TSS (NM_019521)	50.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	41.19	35.21	33.09	58.32	51.55	37.63	30.56	35.22	34.03	24.6	30.65	14.1
Merged-chr2-19630714-3	chr2	19630612	19630812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27185.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	48.05	49.05	50.77	57.51	46.64	46.41	39.53	61.49	78.09	67.78	73.86	46.68
Merged-chr13-53377391-3	chr13	53377305	53377505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-44.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	35.53	39.49	38.79	38.61	35.59	28.85	20.59	22.88	96.77	69.29	77.38	71.11
Merged-chr11-11788807-3	chr11	11788684	11788884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20178.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	27.86	52.07	19.4	37.81	32.32	49.54	69.09	38.16	38.94	52.22	50.75	31.64
Merged-chr17-64622479-3	chr17	64622360	64622560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	20811.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	82.37	100.61	106.68	115.03	118.64	132.33	94.34	121.12	162.27	133.06	181.4	88.34
Merged-chr11-68691838-3	chr11	68691784	68691984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-31.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	56.53	32.45	50.77	59.53	71.18	72.12	52.48	68.58	71.59	48.7	97.48	32.58
Merged-chr1-21218693-3	chr1	21218584	21218784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	109.0	NM_029398	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	65.41	72.19	91.84	91.7	76.91	98.78	156.45	97.85	48.78	82.35	89.44	46.99
Merged-chr11-115475628-3	chr11	115475496	115475696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-71.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	27.05	35.72	30.8	55.1	37.64	36.37	17.61	29.83	42.68	40.17	51.76	14.41
Merged-chr2-59882567-3	chr2	59882469	59882669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028118)	promoter-TSS (NM_028118)	37.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	125.58	125.26	95.27	117.44	118.23	163.06	102.97	151.99	147.71	151.13	216.57	111.21
Merged-chr6-67195242-1	chr6	67195142	67195342	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71737.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.85	0.5	5.7	6.03	4.5	4.08	7.31	13.12	3.34	0.0	8.54	2.51
Merged-chr19-34464629-3	chr19	34464515	34464715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	10520.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	30.69	26.16	37.65	35.8	43.77	34.18	26.24	42.9	35.01	33.14	44.72	18.8
Merged-chr11-72215144-3	chr11	72215055	72215255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163728)	promoter-TSS (NM_001163728)	17.0	NM_001163728	75304.0	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	76.72	79.23	51.34	45.05	112.91	137.03	55.47	78.84	135.52	127.53	129.64	91.79
Merged-chr2-131222722-3	chr2	131222616	131222816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-11347.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	8.48	20.37	29.09	23.33	19.23	21.01	17.27	25.85	31.67	19.08	41.2	17.86
Merged-chr7-35081189-3	chr7	35081067	35081267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24601.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	30.28	33.7	48.49	49.07	60.55	35.43	42.52	44.13	50.75	61.26	58.29	29.45
Merged-chr9-122294544-3	chr9	122294444	122294644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133979)	promoter-TSS (NM_133979)	-121.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	235.01	235.43	227.04	269.88	239.73	270.3	198.97	204.59	312.34	328.88	402.49	174.18
Merged-chr16-23233602-3	chr16	23233479	23233679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	7558.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	42.8	47.04	75.87	59.12	53.18	34.49	38.53	63.56	42.88	44.69	63.82	39.78
Merged-chr18-76237522-3	chr18	76237418	76237618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-4183.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	41.99	35.72	38.22	44.24	49.09	37.63	29.9	41.61	50.35	44.19	46.73	31.64
Merged-chr7-63936517-3	chr7	63936415	63936615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	2400.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	43.21	40.5	22.25	35.8	42.14	49.86	47.83	39.34	46.42	67.28	67.33	30.7
Merged-chr4-3683422-1	chr4	3683322	3683522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	5301.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	42.8	28.17	43.93	31.77	64.64	67.42	47.5	45.84	35.21	46.19	37.69	24.75
Merged-chr8-8690560-3	chr8	8690475	8690675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176849)	promoter-TSS (NM_176849)	-38.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	74.3	76.97	75.3	101.76	101.46	117.59	76.07	94.6	145.55	154.15	171.35	62.65
Merged-chr13-73937865-3	chr13	73937741	73937941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	30.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	74.7	74.7	65.03	86.47	83.05	88.74	96.33	77.72	85.36	123.02	137.68	75.5
Merged-chr19-8880911-3	chr19	8880792	8880992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160356)	promoter-TSS (NM_001160356)	41.0	NM_001160356	107197.0	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	39.57	24.15	46.78	28.15	45.0	31.04	28.23	31.91	31.47	37.16	54.77	18.17
Merged-chr14-70402557-3	chr14	70402402	70402602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021308, intron 10 of 22)	B3A|SINE|B2	26592.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	45.63	26.41	38.79	38.61	39.68	33.87	26.24	37.96	43.27	34.14	52.26	33.21
Merged-chr11-44415443-1	chr11	44415343	44415543	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001303244)	TTS (NM_001303244)	15380.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	15.34	22.89	15.4	21.32	15.14	23.83	21.26	17.05	29.5	19.58	44.72	23.18
Merged-chr5-138694900-1	chr5	138694800	138695000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60181.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	5.25	6.29	5.7	1.61	12.27	26.65	16.28	7.91	8.65	8.54	9.04	4.39
Merged-chr19-32712777-3	chr19	32712688	32712888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	-490.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	37.15	27.67	49.06	22.12	49.09	51.74	25.24	42.62	54.09	58.75	66.33	18.48
Merged-chr10-19062245-3	chr10	19062126	19062326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46816.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	242.28	258.82	262.98	237.3	254.46	407.96	219.23	227.69	351.28	380.6	449.72	237.14
Merged-chr1-38987695-3	chr1	38987621	38987821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-93.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	133.25	98.1	135.77	138.36	142.78	166.82	68.1	129.11	179.77	168.71	208.03	114.97
Merged-chr10-13474387-3	chr10	13474284	13474484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195065)	promoter-TSS (NM_001195065)	12.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	18.98	23.9	24.53	32.58	26.18	20.07	16.61	39.81	21.24	15.06	22.61	14.1
Merged-chr15-98567829-3	chr15	98567720	98567920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-184.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	157.48	176.07	130.06	123.07	142.37	201.0	118.25	99.31	198.65	236.99	169.84	126.87
Merged-chr2-112232821-3	chr2	112232719	112232919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7022.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	87.22	91.56	123.79	117.84	134.19	113.2	111.61	167.16	166.4	126.03	188.43	109.64
Merged-chr2-71814199-3	chr2	71814104	71814304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	27265.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	14.54	13.58	15.4	17.29	24.55	21.32	27.57	22.68	28.32	21.59	47.23	20.36
Merged-chr11-50025055-3	chr11	50024964	50025164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290749)	promoter-TSS (NM_001290749)	-267.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	73.49	83.0	61.61	77.62	65.87	92.5	76.73	55.77	77.89	90.88	79.89	65.47
Merged-chr3-89090009-3	chr3	89089907	89090107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	24.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	47.65	41.25	47.92	53.89	60.14	52.05	42.19	56.5	60.78	82.85	75.37	46.05
Merged-chr5-73492560-3	chr5	73492446	73492646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178896, intron 1 of 10)	CpG	1520.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	29.48	31.94	38.79	25.74	31.5	33.55	34.55	38.27	60.58	45.19	80.9	41.66
Merged-chr2-75733431-3	chr2	75733345	75733545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28782.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	106.6	80.24	91.27	101.76	96.14	114.14	74.41	89.64	123.13	98.91	110.04	80.82
Merged-chr10-118869802-3	chr10	118869680	118869880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-877.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	82.78	75.96	95.84	88.48	97.78	122.29	98.32	117.53	135.52	122.51	208.03	91.16
Merged-chr10-62920656-3	chr10	62920561	62920761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	28.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	69.05	52.07	69.03	50.68	70.77	72.44	44.51	49.65	95.59	80.34	108.54	42.92
Merged-chr8-117343722-3	chr8	117343644	117343844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5426.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	40.78	30.69	42.78	31.77	37.64	51.74	33.55	43.46	42.88	42.68	62.31	21.3
Merged-chr3-59205309-3	chr3	59205208	59205408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5574.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	26.25	29.18	45.64	30.57	19.64	28.22	23.25	34.23	36.78	39.16	39.19	18.48
Merged-chr15-99033657-3	chr15	99033550	99033750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009448, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3759.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	82.37	82.25	132.92	95.72	99.0	102.85	117.26	93.28	99.52	114.48	117.08	75.81
Merged-chr9-61370642-3	chr9	61370546	61370746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1720.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	122.35	91.3	119.23	64.35	123.55	147.69	46.5	81.81	145.75	149.13	104.52	94.92
Merged-chr6-87743102-3	chr6	87742997	87743197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12228.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	71.88	62.13	76.44	51.88	63.41	80.59	57.8	76.77	95.2	65.78	66.83	59.83
Merged-chr1-191397662-1	chr1	191397562	191397762	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-621.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	89.64	82.5	111.24	70.38	115.37	125.74	79.39	95.64	142.8	113.48	198.48	93.35
Merged-chr17-53488806-3	chr17	53488705	53488905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025887, intron 2 of 5)	ID_B1|SINE|B4	9571.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	60.57	47.29	108.39	101.76	70.37	86.55	115.6	122.24	87.13	58.24	127.13	79.57
Merged-chr6-135296539-3	chr6	135296443	135296643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13841.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	69.05	64.89	58.19	78.43	79.78	76.2	61.78	84.08	72.97	86.36	106.02	60.46
Merged-chr14-67890008-3	chr14	67890008	67890208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-30363.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	16.15	10.82	15.4	4.02	11.05	7.84	13.95	7.01	14.55	20.08	20.6	7.52
Merged-chr11-106788480-3	chr11	106788372	106788572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	22.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	146.58	137.59	82.72	76.02	87.96	164.94	76.4	60.0	161.68	193.31	125.62	66.41
Merged-chr9-45274830-3	chr9	45274774	45274974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5725.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	37.55	31.44	30.8	30.16	20.46	25.4	34.55	48.11	31.27	19.08	35.17	21.62
Merged-chr9-48817482-3	chr9	48817381	48817581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	18464.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	64.61	47.54	89.56	86.47	112.09	94.39	114.27	138.7	93.03	102.43	120.09	64.53
Merged-chr11-11558869-3	chr11	11558778	11558978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68960.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	39.98	43.26	36.51	45.45	45.41	43.27	34.21	50.22	53.89	58.75	53.26	37.28
Merged-chr16-32868365-3	chr16	32868271	32868471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001200038)	promoter-TSS (NM_001200038)	-5.0	NM_172615	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	65.01	59.11	58.76	62.74	80.18	83.1	28.9	67.65	80.25	87.87	87.43	42.6
Merged-chr7-45704407-1	chr7	45704307	45704507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-840.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	14.94	16.35	19.4	16.49	10.23	13.17	4.32	8.78	21.64	21.09	19.6	9.71
Merged-chr5-100429653-3	chr5	100429562	100429762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_034038)	promoter-TSS (NR_034038)	-127.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	173.23	147.65	188.82	186.62	195.14	238.94	140.51	199.43	227.17	231.47	256.27	156.01
Merged-chr15-95850747-3	chr15	95850629	95850829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	L1MB3|LINE|L1	-20657.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	56.13	58.86	58.19	53.09	61.37	101.91	45.84	40.35	71.4	69.29	85.92	41.98
Merged-chr7-122705985-2	chr7	122705883	122706083	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019430, intron 1 of 3)	L1M2|LINE|L1	34239.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.23	1.51	0.0	0.8	23.73	22.89	16.28	26.41	26.75	22.59	46.23	24.12
Merged-chr6-123252973-3	chr6	123252863	123253063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9144.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	83.59	89.29	131.21	105.78	110.87	125.74	91.01	92.16	135.52	103.94	131.15	83.96
Merged-chr14-59438740-3	chr14	59438648	59438848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320720, intron 1 of 13)	intron (NM_001320720, intron 1 of 13)	2132.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	24.63	22.89	36.51	22.52	31.5	32.93	21.59	32.22	34.81	29.62	40.2	15.66
Merged-chr5-74260574-1	chr5	74260474	74260674	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	65248.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.0	0.5	1.14	0.0	15.55	13.48	23.25	21.79	2.56	0.0	1.0	0.0
Merged-chr6-120038537-5	chr6	120038420	120038620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199083, exon 1 of 28)	5' UTR (NM_001199083, exon 1 of 28)	135.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	54.51	49.05	39.93	43.84	50.32	59.89	52.48	42.93	51.73	65.27	52.76	36.34
Merged-chr10-81297293-3	chr10	81297182	81297382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	4319.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	71.47	47.79	35.94	19.71	83.05	103.17	48.83	44.94	64.91	60.75	49.24	17.86
Merged-chr13-99006428-2	chr13	99006306	99006506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-21841.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	23.02	25.4	15.4	26.55	24.14	22.58	41.19	31.12	19.87	28.12	24.62	25.06
Merged-chr1-71731167-3	chr1	71731065	71731265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77830.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	31.09	23.64	29.09	44.24	56.46	51.43	59.13	54.25	40.32	38.66	64.82	36.34
Merged-chr16-11343506-3	chr16	11343396	11343596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	MIR3|SINE|MIR	20592.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	93.28	82.75	75.87	88.89	94.91	123.86	77.73	104.36	119.19	103.94	151.25	73.62
Merged-chr10-111972664-3	chr10	111972561	111972761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-34.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	156.27	127.02	161.44	145.19	187.37	205.08	139.84	205.35	186.66	175.23	266.82	110.9
Merged-chr6-114045123-3	chr6	114045008	114045208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3028.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	27.86	18.61	36.51	35.8	40.5	65.85	46.5	54.14	20.65	27.62	55.27	23.49
Merged-chr7-19332974-3	chr7	19332881	19333081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12090.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	109.02	95.33	150.6	126.29	127.64	142.36	96.66	129.42	138.08	164.69	250.74	103.06
Merged-chr3-51184971-3	chr3	51184880	51185080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2C1|LTR|ERVL	-39467.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	37.15	13.83	52.48	43.84	54.0	36.06	48.16	66.42	91.66	83.35	123.61	49.5
Merged-chr8-72295877-3	chr8	72295768	72295968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23194.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	145.37	122.49	216.77	150.02	149.32	198.18	203.62	212.78	185.08	197.83	286.92	148.8
Merged-chr19-41016537-3	chr19	41016454	41016654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4876.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	31.09	26.16	20.54	23.33	27.41	43.59	10.3	27.36	25.96	29.62	24.62	15.98
Merged-chr16-93607875-3	chr16	93607782	93607982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007620)	promoter-TSS (NM_007620)	45.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	43.21	27.17	35.37	38.61	25.36	39.2	26.91	33.76	35.01	20.59	37.18	17.54
Merged-chr19-60982118-3	chr19	60982000	60982200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	92351.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	23.42	26.16	33.66	40.62	32.32	42.02	44.51	49.54	30.68	47.7	54.27	34.77
Merged-chr10-98894616-3	chr10	98894516	98894716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-20026.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	62.59	43.51	50.77	63.15	76.5	58.64	67.1	75.56	75.53	63.27	96.98	54.51
Merged-chr18-34927721-3	chr18	34927622	34927822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	PB1D7|SINE|Alu	4281.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	48.86	34.96	39.93	40.62	52.77	52.68	15.61	42.53	40.91	41.17	53.77	27.88
Merged-chr12-26449675-3	chr12	26449564	26449764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021384, intron 3 of 5)	intron (NM_021384, intron 3 of 5)	6788.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	15.75	17.86	4.56	13.27	23.73	31.98	13.62	26.16	22.23	20.08	32.16	25.69
Merged-chr4-128618716-3	chr4	128618652	128618852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-133.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	15.34	21.38	31.38	21.72	14.73	10.66	17.94	13.54	26.16	15.57	16.08	16.29
Merged-chr5-130172472-3	chr5	130172364	130172564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	645.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	67.43	53.83	46.21	47.86	71.18	93.44	56.8	76.49	110.74	91.89	136.68	42.29
Merged-chr4-15945387-3	chr4	15945258	15945458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026172, exon 1 of 10)	5' UTR (NM_026172, exon 1 of 10)	149.0	NM_026172	67460.0	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	41.59	29.93	19.97	47.46	45.41	46.41	44.18	68.75	37.37	40.17	64.32	20.36
Merged-chr1-9944124-3	chr1	9944023	9944223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-5.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	65.82	39.74	67.31	63.95	78.96	76.83	49.49	71.02	98.54	99.42	156.77	71.11
Merged-chr19-4145152-3	chr19	4145043	4145243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-3520.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	29.07	23.64	29.09	37.0	42.96	28.85	31.56	31.82	45.24	46.7	30.65	33.21
Merged-chr15-100040920-3	chr15	100040856	100041056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	2292.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	35.13	23.9	30.8	46.66	31.09	23.52	27.9	43.26	48.19	24.6	31.66	31.01
Merged-chr7-3709997-3	chr7	3709887	3710087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5946.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	48.46	52.82	51.34	45.85	47.46	66.48	22.59	35.5	59.6	50.71	38.69	22.87
Merged-chr6-134556381-1	chr6	134556281	134556481	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	MER92A|LTR|ERV1	10532.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.0	0.0	0.0	4.02	2.45	0.0	0.66	1.12	90.28	57.74	111.55	71.11
Merged-chr7-19665016-3	chr7	19664906	19665106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	24.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	53.7	46.28	26.81	39.42	47.87	70.55	30.89	46.07	60.78	55.23	47.74	30.7
Merged-chr16-55664090-3	chr16	55663996	55664196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158042.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	24.63	16.1	35.37	40.62	53.59	29.48	74.07	59.86	36.39	19.58	33.67	25.69
Merged-chr1-153749331-3	chr1	153749226	153749426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-100.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	86.82	79.48	109.53	94.52	87.14	111.63	75.07	95.55	103.85	77.83	113.06	52.94
Merged-chr5-115513923-3	chr5	115513818	115514018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	MER2|DNA|TcMar-Tigger	7242.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	69.86	46.53	99.83	66.36	96.96	87.49	75.73	113.41	83.79	69.29	117.08	66.1
Merged-chr16-10786539-3	chr16	10786436	10786636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-1000.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	29.88	22.89	23.39	16.09	37.64	20.07	12.95	20.36	41.7	24.1	43.21	24.75
Merged-chr1-143702889-3	chr1	143702784	143702984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	9.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	118.72	135.07	110.67	118.65	204.14	189.71	149.48	205.68	192.36	230.47	288.43	108.39
Merged-chrUn_JH584304-9953-1	chrUn_JH584304	9853	10053	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	49736.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	548.17	437.84	767.29	345.22
Merged-chr10-40525954-3	chr10	40525837	40526037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44425.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	51.28	33.45	36.51	19.71	40.5	71.81	27.57	31.85	48.58	23.1	52.76	11.59
Merged-chr9-61025549-3	chr9	61025455	61025655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8486.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	37.15	35.21	52.48	44.64	47.87	43.9	35.21	43.35	60.78	52.22	59.29	32.58
Merged-chr1-87755932-3	chr1	87755832	87756032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	-79.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	83.59	54.58	68.45	50.27	110.46	111.95	66.1	82.12	114.28	140.59	102.51	66.1
Merged-chr6-47889032-3	chr6	47888931	47889131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146175, intron 2 of 7)	intron (NM_146175, intron 2 of 7)	11476.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	35.53	30.94	33.66	46.25	15.14	14.74	14.95	37.85	26.36	6.53	19.6	17.23
Merged-chr10-10469316-3	chr10	10469230	10469430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	2984.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	112.26	80.24	78.72	105.38	100.23	131.07	106.29	133.96	150.07	135.07	164.31	83.96
Merged-chr15-59004259-3	chr15	59004164	59004364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70454.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	24.63	16.1	23.96	39.01	36.41	39.82	24.58	51.84	27.73	21.09	36.68	31.95
Merged-chr14-118937810-3	chr14	118937711	118937911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-121.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	252.78	317.93	294.93	339.05	286.37	364.37	337.15	365.83	449.83	384.11	552.23	289.77
Merged-chrX-48284791-3	chrX	48284713	48284913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045916, intron 1 of 3)	intron (NR_045916, intron 1 of 3)	613.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	67.03	53.07	85.57	74.81	83.05	84.35	89.35	81.42	90.67	70.8	149.24	59.21
Merged-chr9-70503817-3	chr9	70503719	70503919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033604)	promoter-TSS (NM_033604)	-44.0	NM_033604	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	77.53	76.97	63.32	61.54	62.59	68.99	73.41	62.22	112.31	84.35	123.11	67.67
Merged-chr3-10012502-3	chr3	10012399	10012599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272098)	promoter-TSS (NM_001272098)	-86.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	41.19	42.01	41.64	49.47	48.68	42.96	43.18	47.02	43.27	48.7	71.86	50.12
Merged-chr12-117728476-3	chr12	117728348	117728548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 20 of 27)	intron (NM_175930, intron 20 of 27)	-115413.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	14.54	23.64	27.38	21.72	23.32	16.62	13.62	18.28	20.85	16.57	21.1	11.28
Merged-chr8-46741172-3	chr8	46741048	46741248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	CpG	1403.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	61.38	43.51	45.07	44.64	40.5	45.47	37.2	55.57	49.37	44.19	70.35	40.41
Merged-chr4-141793614-3	chr4	141793513	141793713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015733)	promoter-TSS (NM_015733)	1.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	178.88	181.85	170.57	167.72	145.23	241.76	125.56	130.88	195.11	213.9	242.7	108.39
Merged-chr7-4739871-3	chr7	4739749	4739949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-278.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	272.56	284.98	333.72	282.34	340.78	389.14	296.63	294.51	365.05	400.68	483.39	260.32
Merged-chr7-132243069-3	chr7	132242963	132243163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-72601.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	115.89	91.3	120.94	139.97	161.19	139.85	115.26	132.76	172.5	163.69	201.5	97.43
Merged-chr3-146812576-3	chr3	146812468	146812668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	CpG	378.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	30.28	21.38	10.84	18.5	20.86	24.46	19.6	28.99	25.18	28.62	44.22	18.17
Merged-chr16-38763693-3	chr16	38763616	38763816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019804, intron 5 of 6)	intron (NM_019804, intron 5 of 6)	21457.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	44.01	30.94	77.58	61.13	50.73	26.03	48.5	81.5	48.39	34.14	76.88	32.89
Merged-chr13-41359023-3	chr13	41358929	41359129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-28.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	58.95	51.06	73.59	69.18	72.0	73.69	43.85	80.8	78.68	65.27	94.47	44.17
Merged-chr10-127596906-3	chr10	127596808	127597008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24240.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	149.4	145.38	155.73	146.4	169.78	247.1	179.37	190.15	199.25	213.9	279.88	116.85
Merged-chr19-4123228-3	chr19	4123129	4123329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016666, intron 1 of 6)	L1MB2|LINE|L1	-1654.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	51.69	38.99	59.33	56.31	46.23	58.64	40.19	46.21	56.65	44.19	51.25	47.62
Merged-chr15-37961118-3	chr15	37961026	37961226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199476)	promoter-TSS (NM_199476)	-71.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	230.97	247.76	248.72	243.33	269.6	306.99	226.54	243.76	290.11	248.04	390.43	201.74
Merged-chr13-94382213-3	chr13	94382096	94382296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23236.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	65.01	55.34	66.17	70.79	47.46	49.23	58.79	77.5	78.48	44.19	88.44	40.41
Merged-chr13-73490139-3	chr13	73490038	73490238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 3 of 13)	MTD|LTR|ERVL-MaLR	22755.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	38.76	50.81	64.46	57.11	53.18	46.72	52.82	92.97	47.21	36.65	77.88	62.03
Merged-chr1-93478414-3	chr1	93478318	93478518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-41.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	156.67	131.3	195.1	128.7	189.82	202.25	167.75	206.5	267.3	261.6	292.95	179.82
Merged-chr15-58745654-3	chr15	58745547	58745747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77780.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	67.84	75.46	75.3	83.66	84.28	76.51	52.15	75.98	104.44	82.85	109.54	70.48
Merged-chr19-5661141-3	chr19	5661040	5661240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164568, intron 1 of 15)	intron (NM_001164568, intron 1 of 15)	2567.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	44.42	23.39	55.33	39.42	61.77	55.19	31.22	58.01	52.71	57.24	54.77	39.47
Merged-chr12-112941960-3	chr12	112941827	112942027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316724, intron 1 of 4)	CpG	215.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	37.15	26.91	53.05	36.2	54.41	46.72	34.21	30.14	41.7	57.24	69.85	46.05
Merged-chr2-156007997-3	chr2	156007870	156008070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145352)	promoter-TSS (NM_001145352)	7.0	NM_001145352	320095.0	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	106.2	142.36	138.62	127.5	130.91	137.97	99.98	117.17	143.19	136.57	218.08	88.97
Merged-chr10-60706453-3	chr10	60706355	60706555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9965.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	78.34	106.14	104.39	111.41	122.32	148.95	87.03	119.44	112.51	97.41	150.24	69.86
Merged-chr3-31094601-3	chr3	31094476	31094676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-482.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	115.08	106.4	130.06	86.07	120.28	186.58	136.52	114.93	186.07	165.19	217.07	81.14
Merged-chr3-51197290-3	chr3	51197180	51197380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27167.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	42.4	33.96	55.33	43.04	110.05	101.91	110.61	84.36	77.69	97.41	112.56	47.93
Merged-chr7-127288161-3	chr7	127288075	127288275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8085.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	29.48	27.67	27.38	27.75	36.82	56.13	24.58	28.54	46.22	54.23	67.33	27.88
Merged-chr8-80739655-3	chr8	80739550	80739750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	-191.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	202.71	195.94	178.55	126.29	185.73	203.51	166.75	89.19	177.22	240.51	247.22	122.17
Merged-chr19-18713098-3	chr19	18713005	18713205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-131.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	211.59	191.41	196.81	217.19	199.64	236.12	167.75	225.81	250.97	257.58	330.13	149.11
Merged-chr1-40084587-3	chr1	40084473	40084673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360801)	promoter-TSS (NM_001360801)	-141.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	56.53	35.47	37.65	74.41	36.82	47.35	34.55	45.67	53.11	45.69	59.29	34.15
Merged-chr4-108460799-3	chr4	108460698	108460898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 2 of 30)	CpG	1372.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	23.82	21.38	37.08	32.98	48.68	38.88	23.92	36.56	56.65	37.16	87.93	26.0
Merged-chr9-113709108-3	chr9	113708986	113709186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164677)	promoter-TSS (NM_001164677)	-827.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	50.88	45.02	78.15	50.68	56.87	42.02	33.55	65.27	64.51	60.25	91.45	41.04
Merged-chr14-20703000-3	chr14	20702901	20703101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029446)	promoter-TSS (NR_029446)	-26.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	33.11	36.72	38.79	37.4	34.77	46.72	33.22	28.63	50.75	53.22	68.34	37.28
Merged-chr3-119783242-4	chr3	119783105	119783305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019550, exon 1 of 14)	exon (NM_019550, exon 1 of 14)	183.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	53.7	60.12	33.09	52.69	55.64	56.76	82.71	48.36	56.84	43.18	61.81	38.22
Merged-chr3-20028825-3	chr3	20028747	20028947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	6463.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	35.53	30.94	47.35	62.34	33.55	48.29	50.16	74.83	38.55	23.6	36.68	22.24
Merged-chr1-13980465-3	chr1	13980361	13980561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-193532.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	16.56	26.16	33.66	49.47	40.5	17.25	26.24	36.76	53.11	31.63	44.22	32.27
Merged-chr12-8499352-4	chr12	8499234	8499434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007483, exon 1 of 1)	exon (NM_007483, exon 1 of 1)	675.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	160.31	146.39	110.1	86.07	113.32	170.58	57.47	56.94	201.8	188.79	252.25	119.04
Merged-chr9-108649396-3	chr9	108649290	108649490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	18.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	130.83	96.59	107.82	90.9	102.28	152.08	88.03	76.01	148.5	140.59	188.93	109.96
Merged-chr7-16272937-3	chr7	16272853	16273053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001136270, exon 1 of 1)	exon (NM_001136270, exon 1 of 1)	739.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	30.28	18.86	20.54	35.39	18.82	34.81	26.24	25.49	30.49	23.1	42.71	29.13
Merged-chr15-86201199-3	chr15	86201095	86201295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13264.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	87.22	62.13	74.16	90.09	94.09	101.91	94.0	104.75	79.66	82.35	91.45	46.68
Merged-chrX-18162485-3	chrX	18162394	18162594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009483)	promoter-TSS (NM_009483)	-81.0	NM_009483	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	109.83	99.35	110.67	122.27	120.69	138.29	124.23	144.95	142.01	166.7	230.14	119.67
Merged-chr11-71285379-2	chr11	71285270	71285470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027858)	promoter-TSS (NR_027858)	-138.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	37.96	16.85	31.38	45.05	0.0	0.0	0.0	0.0	24.59	22.09	29.65	24.12
Merged-chr4-136893021-3	chr4	136892918	136893118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-104.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	137.69	115.7	169.43	129.91	132.55	162.43	89.02	133.37	187.64	173.73	192.95	113.72
Merged-chr14-32513505-3	chr14	32513403	32513603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081221)	promoter-TSS (NM_001081221)	-18.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	41.19	40.24	39.93	31.37	51.14	48.92	37.2	35.02	40.91	47.7	58.29	29.76
Merged-chr11-109361589-3	chr11	109361458	109361658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038097, intron 1 of 1)	intron (NR_038097, intron 1 of 1)	-1236.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	86.41	82.0	77.58	44.24	49.91	84.35	35.54	27.03	84.18	81.84	66.83	42.29
Merged-chr13-112137757-3	chr13	112137645	112137845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-150706.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	8.48	15.34	22.82	17.29	17.59	24.46	13.29	14.22	29.31	21.59	33.67	15.04
Merged-chr10-67043408-3	chr10	67043306	67043506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	38331.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	30.69	20.12	25.67	18.9	42.14	36.37	14.28	34.68	45.83	39.16	46.73	25.06
Merged-chr19-34602100-3	chr19	34601999	34602199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101605)	promoter-TSS (NM_001101605)	-131.0	NM_001101605	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	40.38	33.45	59.33	43.04	18.82	35.75	17.61	20.52	89.3	57.74	76.38	38.85
Merged-chr11-26586754-3	chr11	26586642	26586842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7178.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	48.46	36.47	83.86	65.96	37.64	32.93	34.21	64.49	51.93	47.7	53.77	31.64
Merged-chr13-14063562-3	chr13	14063473	14063673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	-85.0	NM_010282	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	315.77	328.24	356.54	372.44	382.1	437.12	336.16	439.21	423.67	445.37	490.93	244.35
Merged-chr4-105703607-3	chr4	105703519	105703719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-537594.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	48.86	56.09	74.73	64.75	56.46	52.37	42.85	54.34	84.58	67.28	95.97	47.3
Merged-chr2-168080809-3	chr2	168080694	168080894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021409)	promoter-TSS (NM_021409)	-210.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	30.28	22.39	15.97	23.33	24.96	42.65	22.92	32.16	45.43	38.16	36.68	23.49
Merged-chr17-87985032-3	chr17	87984935	87985135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9985.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	76.72	75.46	114.09	96.13	104.32	134.21	78.06	82.43	119.19	114.48	166.82	65.16
Merged-chr9-21927469-3	chr9	21927372	21927572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253870)	promoter-TSS (NM_001253870)	1.0	NM_025977	67119.0	Mm.154305	NM_025977	ENSMUSG00000006241	Ccdc159	2510048L02Rik	coiled-coil domain containing 159	protein-coding	134.87	125.01	121.51	114.22	185.32	223.89	93.01	153.9	146.53	178.25	167.33	84.27
Merged-chr14-120278448-3	chr14	120278350	120278550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2781.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	72.28	42.76	58.76	47.86	58.5	49.54	45.51	68.75	66.09	54.23	62.31	48.24
Merged-chr7-102513207-3	chr7	102513099	102513299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18426.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	27.05	33.2	19.97	52.69	27.0	37.94	27.9	40.79	30.49	23.1	46.73	22.56
Merged-chr17-46160294-3	chr17	46160206	46160406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-726.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	98.53	79.73	82.72	84.86	96.96	94.7	56.8	88.37	109.75	91.89	121.6	67.04
Merged-chr2-166467321-3	chr2	166467218	166467418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19867.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	65.82	51.81	77.58	77.62	65.46	67.42	48.83	67.15	57.04	54.23	71.86	59.21
Merged-chr9-122805588-3	chr9	122805519	122805719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013405)	promoter-TSS (NM_001013405)	72.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	48.05	57.6	65.6	60.73	66.27	75.57	67.43	57.39	68.25	74.81	82.91	53.57
Merged-chr2-174440038-3	chr2	174439910	174440110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-971.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	37.15	25.15	40.5	30.57	49.09	40.14	25.58	30.45	60.19	59.25	49.75	37.91
Merged-chr3-32389229-1	chr3	32389129	32389329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-23564.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	24.23	23.14	16.54	36.2	0.41	1.88	0.33	0.48	0.59	0.5	0.0	0.94
Merged-chr8-122432984-3	chr8	122432850	122433050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007806)	promoter-TSS (NM_007806)	-10.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	114.27	115.95	82.15	42.23	89.18	188.77	70.09	62.08	142.8	96.4	138.18	53.88
Merged-chr1-13652270-3	chr1	13652202	13652402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	8207.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	42.4	29.18	53.05	41.83	26.18	26.97	31.56	45.7	22.23	15.06	27.64	29.13
Merged-chr9-37247602-3	chr9	37247510	37247710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8128.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	58.95	67.16	41.07	75.61	85.5	79.96	83.71	81.36	103.65	78.33	87.43	52.32
Merged-chr14-27379537-3	chr14	27379439	27379639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	18150.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	41.19	35.47	51.91	29.36	51.55	65.22	50.49	57.36	57.24	40.17	50.75	26.0
Merged-chr12-105033411-3	chr12	105033309	105033509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028419, intron 1 of 1)	intron (NM_028419, intron 1 of 1)	791.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	15.75	18.61	14.26	12.47	24.55	31.98	25.24	28.07	20.26	11.55	32.66	17.23
Merged-chr11-60454619-3	chr11	60454562	60454762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021354)	promoter-TSS (NM_021354)	71.0	NM_021354	13495.0	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605|DRG-2	developmentally regulated GTP binding protein 2	protein-coding	27.05	23.64	18.83	16.09	22.91	19.13	15.28	15.0	26.36	18.08	19.6	15.04
Merged-chr7-141168826-3	chr7	141168727	141168927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172101)	promoter-TSS (NM_001172101)	109.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	66.22	55.34	70.74	79.64	87.14	91.88	58.13	95.08	70.41	78.33	109.04	70.17
Merged-chr13-49421173-3	chr13	49421093	49421293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199056)	promoter-TSS (NM_199056)	-30.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	128.0	75.46	107.25	94.11	111.69	120.1	61.45	116.08	119.78	117.99	127.63	54.2
Merged-chr7-27542843-3	chr7	27542747	27542947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011116, exon 3 of 14)	5' UTR (NM_011116, exon 3 of 14)	10371.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	46.44	31.69	30.23	47.46	49.09	36.06	34.88	42.31	54.88	48.2	62.31	41.04
Merged-chr5-112251493-3	chr5	112251421	112251621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312884, intron 1 of 4)	intron (NM_001312884, intron 1 of 4)	997.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	16.15	18.11	29.09	9.65	27.0	18.19	28.57	23.38	30.49	21.59	33.67	27.88
Merged-chr1-63119906-3	chr1	63119812	63120012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045914, intron 1 of 3)	intron (NR_045914, intron 1 of 3)	5172.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	37.96	17.1	25.1	16.89	36.0	36.06	16.94	31.18	36.39	24.1	33.16	19.11
Merged-chr5-114942230-3	chr5	114942142	114942342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	40.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	42.4	37.23	23.96	28.15	40.5	41.39	23.25	27.03	49.76	40.67	40.7	29.45
Merged-chr5-20681288-3	chr5	20681162	20681362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	200862.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	25.84	29.68	23.96	33.78	45.82	26.65	28.9	47.22	29.11	21.59	29.14	15.98
Merged-chr13-62684831-3	chr13	62684741	62684941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60659.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	41.59	44.52	52.48	55.5	37.23	51.43	61.45	16.63	48.19	54.73	68.84	42.6
Merged-chr4-141138625-3	chr4	141138516	141138716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1180.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	29.07	16.85	27.38	46.66	36.41	41.39	29.23	45.87	47.01	43.68	57.79	31.95
Merged-chr14-67008817-4	chr14	67008679	67008879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009761)	promoter-TSS (NM_009761)	98.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	85.6	100.86	86.14	95.32	97.78	116.02	77.73	66.76	106.8	135.07	113.06	85.21
Merged-chr15-38078237-3	chr15	38078123	38078323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 1 of 58)	CpG	631.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	44.01	38.74	23.96	26.14	32.73	44.53	41.85	39.98	48.19	49.21	49.24	23.18
Merged-chr11-54068483-3	chr11	54068374	54068574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	543.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	33.52	18.36	22.25	19.31	24.14	42.33	26.57	18.5	27.34	30.63	25.63	15.66
Merged-chr4-125127486-3	chr4	125127387	125127587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 1 of 5)	CpG	394.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	115.08	158.71	128.92	115.83	105.96	189.4	121.57	102.65	170.92	186.78	175.87	72.68
Merged-chr2-166905980-3	chr2	166905907	166906107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023565)	promoter-TSS (NM_023565)	-89.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	63.8	53.07	71.88	61.13	103.09	89.05	52.48	71.64	117.23	101.43	70.35	58.89
Merged-chr2-32570854-3	chr2	32570760	32570960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	2.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	50.88	47.04	45.07	57.92	68.73	60.52	30.89	44.47	67.27	73.31	70.35	39.78
Merged-chr18-46477005-3	chr18	46476892	46477092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11176.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	50.88	45.02	34.8	48.67	93.68	71.18	35.87	81.59	74.35	70.8	98.99	41.04
Merged-chr1-171232031-3	chr1	171231936	171232136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	2313.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	14.54	14.84	19.97	40.22	23.73	49.54	38.86	29.36	25.37	20.59	25.63	20.99
Merged-chr17-83646591-2	chr17	83646510	83646710	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14715.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.65	5.53	9.13	3.62	20.46	20.07	17.61	24.31	16.92	17.07	31.15	19.11
Merged-chr2-3419096-3	chr2	3418972	3419172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355210)	promoter-TSS (NM_001355210)	57.0	NM_001355207	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	140.52	149.41	119.8	129.51	157.5	139.23	111.28	125.19	134.34	164.69	161.3	89.28
Merged-chr17-28177299-3	chr17	28177188	28177388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	92.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	64.61	62.38	48.49	36.2	38.86	71.18	38.86	36.06	51.73	57.74	58.29	35.09
Merged-chr12-4917311-3	chr12	4917217	4917417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-36.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	110.24	99.61	120.37	119.05	121.09	118.53	107.62	107.08	135.32	119.5	174.36	83.02
Merged-chr4-95050096-3	chr4	95050002	95050202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2120.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	62.99	59.36	54.19	55.1	42.55	46.72	31.56	50.89	55.66	49.21	107.03	40.72
Merged-chr7-24374092-3	chr7	24373985	24374185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3822.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	39.98	37.23	43.35	41.43	55.64	44.21	46.84	50.94	70.41	62.76	69.34	50.44
Merged-chr4-135433885-3	chr4	135433797	135433997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-92.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	61.78	61.37	51.34	76.82	71.18	87.8	49.49	62.75	85.36	61.76	86.93	68.29
Merged-chr9-25482049-1	chr9	25481949	25482149	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 1 of 7)	intron (NM_026189, intron 1 of 7)	452.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	16.15	9.56	5.13	2.82	14.32	20.7	20.93	13.12	23.21	11.55	17.08	20.05
Merged-chr18-10726337-4	chr18	10726216	10726416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144860, exon 1 of 21)	exon (NM_144860, exon 1 of 21)	691.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	14.54	13.33	38.22	28.56	27.82	23.52	39.86	20.5	26.55	16.57	30.65	17.23
Merged-chr14-46915713-3	chr14	46915623	46915823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	32758.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	24.63	15.34	37.65	22.12	40.91	22.89	27.9	45.73	20.85	19.58	20.1	17.23
Merged-chr10-26799047-3	chr10	26798953	26799153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	26541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	52.9	40.24	69.6	36.6	64.23	94.39	85.37	97.49	68.25	56.74	78.89	38.53
Merged-chr19-5510621-3	chr19	5510532	5510732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-115.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	147.39	127.02	142.04	117.04	128.46	158.67	87.03	140.94	163.64	164.69	165.82	79.57
Merged-chr7-110164287-3	chr7	110164192	110164392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42233.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	72.28	101.37	58.19	74.41	96.96	112.89	41.52	71.69	118.41	120.0	88.44	81.45
Merged-chr4-43381993-3	chr4	43381889	43382089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037709)	promoter-TSS (NM_001037709)	7.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	89.64	109.92	74.73	105.38	87.96	110.38	63.11	86.89	126.47	113.98	123.11	63.28
Merged-chr16-55934767-3	chr16	55934637	55934837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159366, intron 1 of 4)	intron (NM_001159366, intron 1 of 4)	111.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	37.15	42.76	35.94	64.75	53.18	69.93	103.64	56.02	48.98	54.73	66.33	59.21
Merged-chr5-137828883-3	chr5	137828795	137828995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	7383.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	90.45	70.68	113.52	97.73	102.28	130.13	86.03	119.19	106.41	118.5	136.68	77.06
Merged-chr5-64701978-3	chr5	64701899	64702099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-91300.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	17.36	21.38	25.1	24.53	12.27	14.74	22.59	22.09	24.19	24.6	21.1	28.51
Merged-chr5-30155140-3	chr5	30155037	30155237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178878)	promoter-TSS (NM_178878)	-116.0	NM_145558	231086.0	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	20.59	26.91	26.81	26.95	29.46	40.76	26.24	25.35	24.0	43.18	16.08	21.3
Merged-chr12-91183670-3	chr12	91183563	91183763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	73434.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	24.63	27.67	40.5	33.38	20.86	37.0	20.59	44.02	43.66	33.64	41.2	19.42
Merged-chr17-17867241-3	chr17	17867121	17867321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12033.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	92.87	76.21	74.73	104.57	95.73	107.56	81.05	111.42	111.92	102.93	166.82	56.7
Merged-chr3-127789916-3	chr3	127789825	127790025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	53.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	113.87	143.62	129.49	56.71	118.23	176.54	98.65	70.91	144.37	109.46	142.2	60.15
Merged-chr13-75823385-3	chr13	75823289	75823489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16496.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	49.26	53.07	65.03	70.79	47.87	63.66	34.88	85.77	87.92	56.74	82.41	33.83
Merged-chr9-57874334-3	chr9	57874236	57874436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36650.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	25.44	20.37	39.36	42.23	40.5	47.04	27.57	28.43	67.07	44.19	74.37	47.62
Merged-chr17-56990298-3	chr17	56990201	56990401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017393)	promoter-TSS (NM_017393)	37.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	68.65	67.91	65.6	69.98	89.18	87.17	35.87	87.62	87.13	87.87	135.67	55.76
Merged-chr7-44374456-3	chr7	44374350	44374550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027049, exon 2 of 6)	5' UTR (NM_027049, exon 2 of 6)	580.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	61.78	47.79	58.76	59.93	58.5	84.04	42.85	63.39	66.68	60.25	69.85	42.6
Merged-chr10-30200564-3	chr10	30200479	30200679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-39.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	47.24	71.69	58.19	42.63	38.46	55.82	58.46	74.86	71.99	60.75	102.0	46.99
Merged-chr6-54718976-3	chr6	54718861	54719061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37337.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	36.34	26.91	46.78	43.44	32.73	33.87	30.23	56.3	31.67	15.06	35.68	25.06
Merged-chr5-28071201-3	chr5	28071118	28071318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	-194.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	249.14	252.03	295.5	270.68	297.42	319.53	244.81	252.53	330.44	326.87	388.42	188.27
Merged-chr2-93822518-3	chr2	93822407	93822607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010163)	promoter-TSS (NM_010163)	61.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	71.07	52.32	49.06	67.97	74.46	59.58	63.11	72.0	66.09	72.81	81.9	26.63
Merged-chr7-104400853-3	chr7	104400716	104400916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42170.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	51.28	58.61	38.79	40.22	59.32	73.69	45.84	57.59	43.86	43.68	46.23	26.94
Merged-chr2-58183847-3	chr2	58183748	58183948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19874.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	33.52	17.1	38.22	49.47	40.09	41.71	59.13	84.62	44.84	61.76	78.89	40.1
Merged-chr2-145806506-3	chr2	145806394	145806594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20378.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	31.9	24.65	52.48	30.16	59.32	63.97	56.47	55.74	50.35	29.62	38.19	25.06
Merged-chr19-8713023-3	chr19	8712940	8713140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 2 of 9)	intron (NM_001161413, intron 2 of 9)	857.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	83.59	64.89	79.86	67.97	74.87	88.43	47.5	62.92	119.39	94.9	97.98	48.56
Merged-chr19-10191475-3	chr19	10191327	10191527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105959)	promoter-TSS (NR_105959)	52.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	52.49	34.96	47.35	56.71	37.23	42.33	49.16	55.68	42.09	45.19	71.86	38.85
Merged-chr12-55447267-3	chr12	55447130	55447330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45417.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	32.3	20.12	66.17	32.18	40.91	50.49	69.42	81.67	31.67	49.71	51.25	19.74
Merged-chrUn_JH584304-32865-1	chrUn_JH584304	32765	32965	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	26824.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	23.01	21.59	32.66	21.93
Merged-chr15-101284095-3	chr15	101283999	101284199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-202.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	41.99	50.31	37.65	24.13	40.5	47.04	44.51	41.27	54.48	40.17	41.71	41.98
Merged-chr16-10545336-3	chr16	10545252	10545452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204229)	promoter-TSS (NM_001204229)	13.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	108.62	73.19	71.88	88.08	103.09	129.19	73.74	115.4	119.0	115.99	142.71	48.87
Merged-chr14-61309774-3	chr14	61309684	61309884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177337)	promoter-TSS (NM_177337)	31.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	65.41	56.34	73.59	46.25	74.05	96.58	51.49	64.85	71.79	69.29	81.9	39.47
Merged-chr5-24423689-3	chr5	24423567	24423767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-137.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	197.86	182.86	220.77	199.09	208.64	245.53	148.81	207.93	233.86	232.98	274.86	140.66
Merged-chr6-30401678-4	chr6	30401562	30401762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311087)	promoter-TSS (NM_001311087)	-193.0	NM_029742	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	39.17	59.36	53.05	37.81	56.05	62.09	50.16	40.77	53.7	58.75	43.21	35.71
Merged-chr2-154737171-1	chr2	154737071	154737271	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-53939.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.21	0.0	0.0	0.4	29.05	43.27	23.92	19.85	0.2	0.0	0.5	0.0
Merged-chr2-71037674-3	chr2	71037569	71037769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	MLT1L|LTR|ERVL-MaLR	17937.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	15.34	17.1	14.83	20.11	34.77	26.97	27.9	39.31	28.32	26.11	27.13	21.93
Merged-chr2-80638857-3	chr2	80638750	80638950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	38.0	NM_027091	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	71.47	55.08	60.47	47.86	78.14	90.62	38.2	46.46	98.34	80.34	103.51	57.33
Merged-chr4-133463316-2	chr4	133463197	133463397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16836.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	27.86	18.36	31.38	25.34	27.82	35.12	53.48	44.47	6.1	3.01	3.52	3.13
Merged-chr13-38659108-3	chr13	38659008	38659208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025380)	promoter-TSS (NM_025380)	-80.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	114.27	108.91	129.49	128.7	157.5	157.73	70.75	130.15	183.71	166.7	244.21	106.2
Merged-chr4-141606090-3	chr4	141605984	141606184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-32.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	99.33	93.57	118.08	94.11	81.82	82.47	63.44	65.33	145.55	148.62	172.85	98.05
Merged-chr5-122343943-3	chr5	122343868	122344068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	10227.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	28.27	24.65	30.23	13.67	24.55	39.82	23.25	38.3	24.39	16.07	26.13	38.22
Merged-chr10-57486290-3	chr10	57486196	57486396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	57.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	162.73	142.87	172.85	139.56	171.41	222.64	137.52	181.23	238.39	195.32	360.28	113.4
Merged-chr1-74373507-3	chr1	74373414	74373614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-1689.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	50.07	34.21	69.6	30.97	96.96	103.17	71.42	95.08	89.69	67.78	108.03	49.81
Merged-chr9-64452926-3	chr9	64452820	64453020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	67294.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	29.07	23.9	39.36	22.93	52.77	61.77	36.87	54.2	55.86	40.17	57.79	40.1
Merged-chr18-34850293-3	chr18	34850207	34850407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9718.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	19.38	15.09	20.54	18.1	20.86	18.5	13.95	24.84	29.5	34.65	43.21	22.87
Merged-chr15-3234291-3	chr15	3234135	3234335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-36532.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	17.77	18.61	17.11	41.02	19.64	21.32	26.24	21.45	18.1	26.61	25.63	16.6
Merged-chr18-40440709-1	chr18	40440609	40440809	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	MTD|LTR|ERVL-MaLR	182348.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	1.26	3.42	2.82	5.32	0.63	1.99	3.31	26.95	27.62	40.7	23.49
Merged-chr7-75587727-1	chr7	75587627	75587827	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	132193.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.44	2.01	3.42	4.42	6.95	1.25	9.97	8.61	2.36	2.01	6.03	6.27
Merged-chr9-70261893-1	chr9	70261793	70261993	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	54543.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	5.65	9.31	15.4	6.84	25.36	22.58	12.95	22.96	7.28	4.52	7.54	5.33
Merged-chr16-15888005-1	chr16	15887905	15888105	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007679, exon 1 of 1)	exon (NM_007679, exon 1 of 1)	719.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	21.0	14.59	7.99	19.31	12.68	5.64	15.94	12.67	11.01	16.07	13.06	17.23
Merged-chr4-130789932-3	chr4	130789825	130790025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2612.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	48.46	34.46	34.23	30.16	45.41	70.87	45.51	51.36	47.99	71.8	76.88	35.71
Merged-chr11-75659503-3	chr11	75659402	75659602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 5 of 31)	L2a|LINE|L2	3487.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	22.61	19.37	23.96	25.34	30.27	26.97	21.92	35.97	30.68	20.59	43.72	28.51
Merged-chr10-125271706-3	chr10	125271632	125271832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	37084.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	31.5	33.7	44.5	51.48	48.68	52.05	57.47	88.01	41.7	38.66	62.31	38.85
Merged-chr3-97158776-3	chr3	97158674	97158874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-3.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	107.81	95.83	84.43	88.89	81.82	104.11	70.75	98.55	103.65	99.42	140.19	69.23
Merged-chr19-17314702-3	chr19	17314578	17314778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24827.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	20.19	24.4	22.25	46.66	29.05	18.81	22.92	27.48	24.39	21.09	33.16	22.87
Merged-chr19-4928327-3	chr19	4928238	4928438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-51.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	55.72	32.45	33.66	41.43	50.73	74.94	35.87	45.42	104.44	61.76	94.97	40.41
Merged-chr6-97179156-3	chr6	97179069	97179269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-45.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	58.55	66.91	86.14	71.59	74.87	100.03	45.84	88.09	94.61	71.8	135.67	55.13
Merged-chr6-113645021-3	chr6	113644927	113645127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	6560.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	137.29	110.42	115.8	119.86	157.1	219.5	78.72	130.23	170.53	226.95	218.58	100.87
Merged-chr8-56551533-3	chr8	56551434	56551634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	400.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	78.34	72.19	56.48	120.26	125.19	104.42	86.36	174.31	138.08	114.48	192.95	83.96
Merged-chr7-121034977-1	chr7	121034877	121035077	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021554, intron 1 of 4)	CpG	532.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	17.77	14.09	13.12	13.67	13.09	11.92	16.61	13.04	18.1	27.11	12.06	19.11
Merged-chr9-78481034-3	chr9	78480932	78481132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010106, intron 1 of 7)	CpG	692.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	50.07	56.09	63.32	43.84	76.5	86.23	63.11	84.9	83.59	97.91	97.98	59.21
Merged-chr7-140856381-3	chr7	140856302	140856502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-19.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	62.18	49.3	74.16	82.45	80.18	83.1	47.5	69.62	71.2	75.82	114.57	68.92
Merged-chr12-85347680-3	chr12	85347611	85347811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-8349.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	23.02	9.56	37.08	26.14	33.96	27.59	41.19	47.64	32.26	21.59	53.77	29.45
Merged-chr11-120796445-3	chr11	120796349	120796549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-54.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	64.61	59.36	34.8	51.88	47.05	81.53	25.91	39.31	65.69	80.34	63.31	44.48
Merged-chr4-56757917-1	chr4	56757817	56758017	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026079, intron 34 of 36)	URR1B|DNA|hAT-Charlie	14495.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	0.0	0.0	0.0	0.8	0.41	0.31	0.0	1.63	47.21	24.1	48.74	21.62
Merged-chr4-126260157-3	chr4	126260067	126260267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2238.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	102.56	84.76	87.28	74.41	108.82	146.75	82.71	99.93	104.83	103.43	178.38	79.88
Merged-chr17-83727857-3	chr17	83727758	83727958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	21695.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	39.17	19.62	37.08	29.76	47.46	38.57	23.92	38.02	50.16	27.11	43.21	34.46
Merged-chr17-44052977-1	chr17	44052877	44053077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25825.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	25.44	22.39	23.96	29.76	1.64	2.51	2.33	2.75	1.18	2.01	3.01	2.19
Merged-chr14-103890984-3	chr14	103890886	103891086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-46510.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	33.52	36.97	35.37	39.82	61.37	56.13	41.19	67.93	76.31	61.26	72.36	38.22
Merged-chr3-53863907-5	chr3	53863811	53864011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-104.0	NM_026435	67890.0	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|Gm10726	ubiquitin-fold modifier 1	protein-coding	28.27	44.77	27.95	35.8	45.41	60.52	56.8	42.22	39.14	54.23	54.77	29.45
Merged-chr13-37658217-3	chr13	37658114	37658314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-167824.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	19.38	19.62	37.65	27.75	37.23	42.65	22.59	23.97	34.22	40.17	39.19	25.37
Merged-chr17-22314963-3	chr17	22314832	22315032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357991)	promoter-TSS (NM_001357991)	-90.0	NM_001357991	631624.0	Mm.440794	NM_001357991		Gm7072	EG631624	predicted gene 7072	protein-coding	46.84	41.5	38.22	51.48	60.96	43.9	44.18	28.18	99.33	80.84	111.55	38.22
Merged-chr1-162005446-4	chr1	162005360	162005560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040562, exon 2 of 3)	non-coding (NR_040562, exon 2 of 3)	491.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	29.88	27.42	53.62	27.35	22.5	32.3	40.86	45.28	38.16	53.22	56.78	24.12
Merged-chr2-72262997-3	chr2	72262877	72263077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-22660.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	31.5	26.41	59.33	65.56	36.0	68.05	48.16	65.1	88.9	72.3	102.0	59.83
Merged-chr18-36348434-5	chr18	36348317	36348517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081365)	promoter-TSS (NM_001081365)	-207.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	18.57	15.59	17.68	33.78	22.5	24.77	18.6	26.36	20.85	26.11	27.13	19.74
Merged-chr14-43925241-3	chr14	43925141	43925341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1873.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	26.25	30.18	24.53	15.69	46.23	55.19	20.93	24.42	43.27	34.65	42.21	21.93
Merged-chr10-62491638-3	chr10	62491535	62491735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4830.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	35.13	26.16	21.68	26.55	27.41	52.68	16.94	23.78	46.62	30.13	56.78	34.46
Merged-chr10-44529530-3	chr10	44529431	44529631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-70783.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	45.63	39.24	35.37	61.54	47.87	46.1	31.22	50.22	85.56	52.72	78.89	56.7
Merged-chr15-12824744-3	chr15	12824648	12824848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029998)	promoter-TSS (NM_029998)	-67.0	NM_026799	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	217.65	199.21	275.53	235.69	259.78	293.82	277.36	373.82	281.46	221.93	344.7	154.44
Merged-chr5-24447777-3	chr5	24447677	24447877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	69.0	NM_022418	64295.0	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	54.51	47.04	63.89	67.57	56.87	58.64	73.08	65.58	52.52	49.71	69.85	45.42
Merged-chr14-46822245-3	chr14	46822161	46822361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-19.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	84.8	96.84	99.83	99.75	112.09	115.08	68.76	103.37	142.01	115.99	161.3	76.44
Merged-chr11-48872424-3	chr11	48872328	48872528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1008.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	30.28	24.65	65.6	34.19	37.64	26.03	23.58	47.66	32.06	25.61	32.16	20.99
Merged-chr13-49186938-1	chr13	49186838	49187038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	-609.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	15.75	5.28	7.42	11.66	6.95	7.84	13.62	11.24	7.67	5.02	11.56	12.53
Merged-chr17-79896121-3	chr17	79896002	79896202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286647)	promoter-TSS (NM_001286647)	21.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	88.03	82.5	106.68	89.69	91.23	120.73	78.39	123.14	135.12	134.56	183.91	80.51
Merged-chr11-3144075-3	chr11	3143977	3144177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 18 of 32)	intron (NM_030207, intron 18 of 32)	20056.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	12.52	12.32	25.1	18.1	32.73	28.85	25.24	29.38	1.38	2.01	0.5	2.82
Merged-chr1-74381638-3	chr1	74381522	74381722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 8 of 14)	intron (NM_013612, intron 8 of 14)	6419.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	93.28	86.78	123.22	49.47	130.91	119.47	112.94	103.74	167.58	251.05	214.56	94.61
Merged-chr4-57956456-3	chr4	57956351	57956551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-40.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	238.64	197.2	191.1	181.39	217.64	317.34	230.86	244.09	315.88	301.77	411.53	172.92
Merged-chr2-180589416-3	chr2	180589405	180589605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031373)	promoter-TSS (NM_031373)	98.0	NM_031373	72075.0	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	34.32	39.99	52.48	27.75	41.73	39.82	38.53	41.83	37.76	45.19	62.81	23.81
Merged-chr9-57589490-3	chr9	57589395	57589595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027895)	promoter-TSS (NM_027895)	43.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	23.82	16.35	20.54	17.29	23.32	25.4	14.62	23.8	23.6	19.08	21.61	15.66
Merged-chr10-14132424-3	chr10	14132320	14132520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	166041.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	35.13	13.58	30.23	22.12	37.64	39.2	49.16	40.35	24.98	14.06	21.1	15.66
Merged-chr3-104788820-3	chr3	104788755	104788955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291859)	promoter-TSS (NM_001291859)	-179.0	NM_007484	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	38.76	42.26	35.37	36.6	50.73	60.83	59.79	58.79	36.39	53.73	38.69	31.95
Merged-chr4-155150712-3	chr4	155150590	155150790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	64086.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	30.28	34.46	37.08	37.81	12.68	26.03	21.59	23.44	27.93	26.61	67.84	22.87
Merged-chr18-23868508-3	chr18	23868392	23868592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	64522.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	18.17	23.39	31.38	18.9	37.23	34.18	24.91	35.75	37.57	38.16	35.68	23.18
Merged-chr1-172207396-3	chr1	172207296	172207496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	-592.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	81.57	79.23	106.68	73.6	119.87	144.87	93.67	98.72	149.09	133.06	139.69	78.94
Merged-chr9-66918813-3	chr9	66918726	66918926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	879.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	19.79	25.4	16.54	21.72	24.96	36.06	19.27	18.64	42.09	37.16	24.12	13.16
Merged-chr16-57501008-3	chr16	57500912	57501112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-48230.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	48.46	38.99	66.17	71.19	74.87	63.34	61.45	93.67	65.5	53.22	73.36	43.54
Merged-chr15-44427995-3	chr15	44427894	44428094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-117.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	298.0	277.18	281.24	315.73	290.87	288.8	241.82	359.02	335.35	339.42	453.24	229.31
Merged-chr7-67445544-3	chr7	67445426	67445626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72668.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	50.88	64.14	83.29	63.55	107.19	77.77	81.71	102.25	86.94	66.28	89.44	51.69
Merged-chr13-43171502-3	chr13	43171420	43171620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025935)	promoter-TSS (NM_025935)	-19.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	44.01	44.52	45.07	39.42	45.0	63.34	26.57	38.5	65.5	70.8	78.89	36.97
Merged-chr3-146813069-3	chr3	146812954	146813154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011100)	promoter-TSS (NM_011100)	-108.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	35.53	42.76	36.51	49.47	47.87	49.54	76.73	42.31	57.83	61.76	71.35	44.8
Merged-chr2-157840767-3	chr2	157840651	157840851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73902.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	49.26	52.57	87.85	77.62	44.59	59.89	64.11	100.04	47.99	48.7	63.31	33.83
Merged-chr1-128642452-3	chr1	128642363	128642563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50164.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	18.57	20.37	39.93	19.31	36.82	54.25	33.55	67.91	42.48	31.13	50.75	32.27
Merged-chr7-116504275-3	chr7	116504173	116504373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-96.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	216.03	206.5	285.8	259.02	310.92	315.45	206.28	306.31	270.84	316.83	387.92	161.02
Merged-chr15-78571647-3	chr15	78571517	78571717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009008, intron 1 of 6)	intron (NM_009008, intron 1 of 6)	1166.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	25.84	28.67	22.82	18.1	29.46	40.76	20.93	22.29	32.45	33.14	39.7	23.18
Merged-chr15-36283228-3	chr15	36283103	36283303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013923)	promoter-TSS (NM_013923)	-56.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	93.68	82.75	81.0	67.17	100.64	120.41	83.04	119.05	146.73	133.56	181.9	74.87
Merged-chr2-73541042-3	chr2	73540933	73541133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11546.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	52.49	41.25	67.31	52.69	67.91	51.43	63.44	73.57	77.1	41.17	58.79	64.53
Merged-chr8-84192790-3	chr8	84192674	84192874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13813.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	64.61	47.79	41.64	57.92	72.41	57.07	26.24	38.19	75.92	75.32	73.36	47.62
Merged-chr9-40582000-3	chr9	40581916	40582116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50633.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	85.2	84.51	86.14	123.07	96.55	101.91	124.9	122.19	129.81	135.07	175.37	103.06
Merged-chrX-155172543-3	chrX	155172438	155172638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24689.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	26.65	30.94	21.68	43.44	27.41	37.32	24.58	44.52	41.7	25.61	51.76	14.72
Merged-chr12-83987903-3	chr12	83987820	83988020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134188)	promoter-TSS (NM_134188)	59.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	33.52	28.93	23.39	22.52	40.09	37.63	28.9	27.79	35.4	31.13	44.72	36.65
Merged-chr4-116655291-3	chr4	116655195	116655395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3621.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	36.75	30.43	41.64	44.24	47.87	47.98	45.84	43.82	45.43	62.26	54.77	39.47
Merged-chr19-21126848-3	chr19	21126746	21126946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22136.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	61.38	46.78	78.72	66.36	87.14	92.82	78.06	76.49	82.22	101.43	137.18	54.82
Merged-chr12-55492713-3	chr12	55492606	55492806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-59.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	252.78	313.4	290.36	201.1	269.6	319.22	276.37	209.58	283.82	311.31	286.92	149.11
Merged-chr18-37999579-3	chr18	37999480	37999680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-611.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	72.68	57.1	78.15	68.78	76.91	99.72	66.1	77.94	75.33	74.31	84.42	41.66
Merged-chr13-110711083-3	chr13	110710981	110711181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-192418.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	33.52	26.66	47.92	27.35	37.23	31.67	17.94	36.62	42.29	35.65	39.19	20.68
Merged-chr16-25958874-3	chr16	25958772	25958972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146912.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	33.11	31.44	46.78	61.94	36.0	37.32	33.88	54.7	35.8	20.59	39.19	22.56
Merged-chr10-117845324-3	chr10	117845213	117845413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	661.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	96.51	98.35	75.3	87.28	93.68	149.26	123.24	107.24	161.09	154.15	169.84	89.59
Merged-chr18-46406089-3	chr18	46405969	46406169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59747.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	51.28	36.22	63.89	76.02	46.64	61.77	64.77	85.88	92.05	65.27	103.51	64.53
Merged-chr7-19803904-3	chr7	19803799	19803999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7090.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	53.3	38.23	39.93	30.97	38.46	87.8	53.81	27.59	63.92	49.71	66.33	24.12
Merged-chr11-79254180-2	chr11	79254058	79254258	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019653, intron 1 of 8)	CpG	537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	18.98	28.42	13.12	8.45	19.64	26.97	14.28	19.09	32.45	34.14	46.23	24.12
Merged-chr9-21718968-3	chr9	21718867	21719067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4609.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	36.75	51.56	65.03	22.93	39.27	82.78	37.87	34.35	78.68	88.87	82.41	52.63
Merged-chr17-25727594-3	chr17	25727506	25727706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	-111.0	NM_028009	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	203.11	222.6	221.34	222.82	234.83	322.98	191.99	225.56	277.53	317.83	300.99	180.75
Merged-chr7-80369247-3	chr7	80369150	80369350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172903, intron 3 of 23)	(TCC)n|Simple_repeat|Simple_repeat	2125.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	29.07	17.36	46.78	19.31	51.14	27.28	36.21	40.15	34.81	33.14	34.67	25.69
Merged-chr1-131527621-3	chr1	131527506	131527706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-245.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	257.22	280.45	314.89	312.11	310.92	346.18	267.73	289.4	397.9	347.96	419.07	227.43
Merged-chr12-11265989-3	chr12	11265893	11266093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	107.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	195.84	188.39	209.93	220.0	201.28	258.38	179.7	210.79	209.87	197.33	259.78	114.97
Merged-chr1-134698649-1	chr1	134698549	134698749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10651.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	27.46	12.32	17.68	22.93	2.45	6.59	3.99	3.79	5.9	6.53	7.54	9.71
Merged-chr13-5888360-3	chr13	5888251	5888451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26862.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	62.18	55.84	60.47	53.89	40.09	41.39	60.79	46.29	32.65	59.75	56.28	43.54
Merged-chr16-32190373-3	chr16	32190287	32190487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	10587.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	98.93	100.61	118.08	137.95	116.19	132.64	67.1	97.4	107.98	87.37	127.63	73.93
Merged-chr13-107945025-3	chr13	107944925	107945125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-54961.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	58.15	54.58	99.83	105.78	89.18	86.23	101.64	127.91	86.35	62.76	115.57	58.27
Merged-chr13-22035769-3	chr13	22035719	22035919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	-2.0	NM_175665	319184.0	Mm.358955	NM_175665	ENSMUSG00000062727	Hist1h2bk	-	histone cluster 1, H2bk	protein-coding	60.97	45.02	64.46	59.53	49.91	55.5	49.49	68.22	68.84	60.75	98.49	48.24
Merged-chr11-117088637-3	chr11	117088524	117088724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	11276.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	74.7	73.7	70.17	65.96	77.73	100.03	52.15	53.83	92.64	88.37	75.37	57.64
Merged-chr6-116264215-3	chr6	116264117	116264317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-2.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	49.26	34.71	46.21	44.64	52.77	57.07	37.87	41.36	50.55	50.71	80.4	34.77
Merged-chr10-80016623-3	chr10	80016540	80016740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142701)	promoter-TSS (NM_001142701)	-32.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	38.36	44.27	67.88	52.69	76.09	53.31	37.54	70.63	68.25	69.79	108.54	38.53
Merged-chr15-68011381-3	chr15	68011297	68011497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	247459.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.48	21.63	26.81	17.7	20.46	17.56	25.24	23.72	14.95	17.07	27.13	18.8
Merged-chr14-14905078-3	chr14	14904964	14905164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84249.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	19.38	25.15	25.1	45.05	24.14	34.18	47.5	42.73	27.34	27.62	33.67	29.13
Merged-chr6-43462480-3	chr6	43462395	43462595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20066.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	33.52	36.72	36.51	37.81	48.68	43.27	53.81	57.84	65.89	47.2	42.71	33.83
Merged-chr5-66070040-3	chr5	66069939	66070139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28140.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	46.03	36.72	53.62	54.3	56.05	46.41	26.24	81.81	68.25	74.31	79.89	42.6
Merged-chr7-99535623-3	chr7	99535497	99535697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177231, exon 1 of 16)	5' UTR (NM_177231, exon 1 of 16)	111.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	52.09	53.83	40.5	35.8	45.41	67.1	36.87	25.32	55.07	67.78	59.29	39.47
Merged-chr9-67043950-3	chr9	67043849	67044049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164254)	promoter-TSS (NM_001164254)	-78.0	NM_001164256	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	91.66	93.07	68.45	98.54	127.64	108.81	61.45	119.52	55.86	98.41	95.97	40.41
Merged-chr17-24165085-3	chr17	24164964	24165164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1331.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	91.26	97.09	110.1	72.8	125.19	166.19	84.7	125.27	120.18	136.07	105.52	79.26
Merged-chr9-85327354-3	chr9	85327253	85327453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-203.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	103.37	122.24	91.84	100.95	118.64	139.23	96.0	110.69	160.5	168.21	182.4	90.53
Merged-chr15-43477635-3	chr15	43477531	43477731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	402.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	41.59	40.24	58.76	57.51	49.91	58.64	64.11	86.64	64.12	48.2	73.86	47.93
Merged-chr2-39373268-3	chr2	39373146	39373346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146897.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	27.86	21.88	16.54	26.55	19.64	38.26	14.95	38.66	28.32	23.1	39.19	16.92
Merged-chr1-84317942-3	chr1	84317825	84318025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33280.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	46.84	33.7	69.03	53.09	60.55	60.83	56.47	62.1	48.78	42.68	35.17	26.94
Merged-chr13-67269122-3	chr13	67269040	67269240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-72.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	41.19	40.5	41.07	42.63	56.05	54.56	37.54	52.57	90.67	75.82	87.43	52.32
Merged-chr12-80812085-3	chr12	80812008	80812208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	21576.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	42.4	36.97	25.67	34.99	33.96	39.82	32.88	27.2	34.22	34.14	30.65	19.74
Merged-chr1-155054878-3	chr1	155054831	155055031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	28333.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	28.27	22.13	51.34	29.76	43.36	34.49	14.28	46.71	48.78	41.67	57.28	27.57
Merged-chr2-16135634-3	chr2	16135541	16135741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-220663.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	26.25	24.65	45.07	61.13	25.36	30.42	19.6	55.37	33.83	27.11	44.72	26.31
Merged-chr7-49778331-3	chr7	49778209	49778409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-49.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	122.35	99.61	73.02	74.0	103.09	141.73	79.72	126.17	127.85	142.1	163.31	108.39
Merged-chr6-115814249-3	chr6	115814125	115814325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110506, intron 7 of 8)	intron (NM_001110506, intron 7 of 8)	-5482.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	17.77	12.32	22.82	19.71	24.14	31.98	17.61	33.5	31.86	25.61	19.6	14.41
Merged-chr11-120549709-3	chr11	120549608	120549808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	19.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	61.38	72.94	30.23	47.86	64.23	81.84	32.55	33.79	88.51	91.38	83.41	45.42
Merged-chr15-78864052-3	chr15	78863952	78864152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-8523.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	32.71	27.67	26.24	37.0	34.36	46.1	27.57	27.64	45.83	37.66	45.73	36.03
Merged-chr7-126135103-3	chr7	126134993	126135193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-52682.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	89.24	88.03	81.0	119.45	94.91	97.52	73.41	82.4	92.05	90.88	126.12	67.67
Merged-chr7-126759456-3	chr7	126759354	126759554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-172.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	48.46	40.24	25.1	14.88	68.73	81.84	34.55	27.64	72.97	93.39	74.87	35.09
Merged-chr10-11149335-3	chr10	11149252	11149452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172937)	promoter-TSS (NM_172937)	-78.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	232.18	277.44	257.28	243.33	290.46	314.2	203.95	284.89	356.01	341.43	437.16	178.25
Merged-chr10-68735899-3	chr10	68735801	68736001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	12155.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	55.72	55.84	135.2	102.56	78.14	69.93	126.56	164.61	127.26	100.42	185.92	95.86
Merged-chr15-99772476-3	chr15	99772358	99772558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028015)	promoter-TSS (NM_028015)	57.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	43.61	21.88	27.38	25.74	39.68	47.98	20.59	38.47	31.67	33.64	36.68	16.6
Merged-chr8-104591361-3	chr8	104591261	104591461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024606)	promoter-TSS (NM_001024606)	-107.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	155.06	127.52	164.86	177.37	160.78	169.96	161.77	183.81	175.25	202.35	221.59	112.15
Merged-chr1-191111409-3	chr1	191111303	191111503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12989.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	93.68	78.23	118.65	77.22	110.05	90.31	83.37	107.86	68.64	74.31	69.34	69.23
Merged-chr5-3420623-3	chr5	3420509	3420709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76716.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	23.02	20.37	17.11	18.1	27.41	21.32	15.61	13.21	23.21	21.59	28.14	16.29
Merged-chr8-119778478-3	chr8	119778357	119778557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-41.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	128.41	103.38	150.6	123.07	183.28	153.34	124.56	184.94	172.1	184.77	209.54	105.26
Merged-chr10-128489640-3	chr10	128489542	128489742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001114096, exon 29 of 29)	3' UTR (NM_001114096, exon 29 of 29)	3367.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	69.05	77.97	75.87	69.18	69.14	103.17	49.16	59.83	102.47	90.38	106.53	52.0
Merged-chr7-127471374-3	chr7	127471286	127471486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-228.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	73.49	87.78	74.16	91.7	88.78	118.53	56.14	73.46	109.16	81.84	95.47	54.2
Merged-chrX-103299133-1	chrX	103299033	103299233	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22265.0	NM_007674	12592.0	Mm.4353	NM_007674	ENSMUSG00000031326	Cdx4	Cdx-3|Cdx-4|Cdx3	caudal type homeobox 4	protein-coding	0.0	0.25	33.66	0.0	0.0	39.51	28.23	1.21	2.95	0.0	3.01	0.31
Merged-chr13-113794398-3	chr13	113794274	113794474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-134.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	154.25	132.56	127.78	159.67	171.41	191.59	152.13	194.44	216.95	167.7	273.85	112.78
Merged-chr8-108714886-3	chr8	108714797	108714997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007496, exon 1 of 10)	5' UTR (NM_007496, exon 1 of 10)	253.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	25.84	29.93	28.52	28.96	29.46	25.09	21.26	28.4	28.32	19.08	21.61	18.8
Merged-chr2-36049363-3	chr2	36049242	36049442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-50.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	73.49	55.34	65.6	64.75	64.23	81.22	35.87	69.93	104.05	100.92	120.09	78.32
Merged-chr14-75168697-3	chr14	75168620	75168820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	MLTR11B|LTR|ERVK	32295.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	27.05	17.36	33.66	26.95	30.27	21.32	21.92	46.37	29.5	26.11	56.28	14.72
Merged-chrX-12087596-3	chrX	12087502	12087702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-7049.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	31.9	37.23	35.94	13.27	27.41	52.68	31.56	27.59	56.65	45.19	45.73	29.45
Merged-chr7-67463859-3	chr7	67463760	67463960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91002.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	37.15	22.64	35.94	42.63	52.37	47.66	40.19	70.63	34.81	37.66	47.74	28.19
Merged-chr2-165983164-3	chr2	165983063	165983263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-9474.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	83.59	77.72	111.81	100.55	105.14	132.33	60.79	109.26	97.75	114.48	167.83	80.2
Merged-chr9-16046832-3	chr9	16046731	16046931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172275.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	24.63	20.12	35.37	40.22	98.59	94.39	96.66	130.63	51.93	69.79	62.81	46.68
Merged-chr13-63278964-3	chr13	63278867	63279067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18180.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	69.86	44.52	74.73	98.94	108.41	100.97	108.95	126.81	91.46	83.85	134.67	69.55
Merged-chr17-69156768-3	chr17	69156671	69156871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013813)	promoter-TSS (NM_013813)	27.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	35.13	15.59	23.96	14.48	39.27	26.34	26.24	37.23	28.91	27.11	57.79	22.56
Merged-chr3-151749998-2	chr3	151749903	151750103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133871)	promoter-TSS (NM_133871)	-44.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	28.67	14.09	49.06	47.86	35.18	32.3	29.23	59.13	6.1	4.52	4.02	2.51
Merged-chrX-142390506-3	chrX	142390385	142390585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207625)	promoter-TSS (NM_207625)	50.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	96.91	95.08	83.29	113.42	89.18	122.61	94.67	116.83	137.68	140.59	161.8	85.84
Merged-chr12-39039939-3	chr12	39039834	39040034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	256223.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	23.82	18.11	33.66	80.84	28.23	22.26	41.19	65.16	26.75	15.06	53.77	24.75
Merged-chr3-9644432-3	chr3	9644340	9644540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34355.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	37.55	26.66	28.52	39.42	54.41	60.52	33.22	66.48	49.57	42.18	66.83	46.68
Merged-chr4-153975141-3	chr4	153975065	153975265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007859)	promoter-TSS (NM_007859)	-84.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	94.08	70.68	77.58	80.84	124.37	113.51	68.43	112.54	122.93	147.12	165.82	76.75
Merged-chr5-135772723-3	chr5	135772605	135772805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5596.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	51.69	22.13	43.35	35.39	33.14	26.34	36.87	35.3	40.12	31.13	32.16	32.58
Merged-chr14-75834406-3	chr14	75834298	75834498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1M8|LINE|L1	10566.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	68.65	71.69	79.86	84.86	87.96	90.62	65.11	83.3	106.8	115.99	135.17	83.96
Merged-chr7-126147392-3	chr7	126147307	126147507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	53094.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	28.67	26.41	41.64	29.76	22.5	43.59	19.6	24.34	47.21	52.72	37.69	22.56
Merged-chr9-53703205-3	chr9	53703121	53703321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	PB1D10|SINE|Alu	3011.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	18.98	18.11	21.11	21.72	20.05	29.79	13.62	26.36	27.14	18.58	31.15	22.24
Merged-chr12-111437671-3	chr12	111437564	111437764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4997.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	77.93	53.58	50.77	59.93	72.0	106.3	75.73	57.84	119.78	72.81	83.41	38.53
Merged-chr13-48625643-3	chr13	48625547	48625747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	25.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	136.08	142.36	143.76	141.57	174.28	185.32	96.33	131.94	212.62	196.32	240.19	106.2
Merged-chr17-43016543-3	chr17	43016453	43016653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178589)	promoter-TSS (NM_178589)	-2.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	82.37	77.22	66.74	86.88	54.0	80.59	60.12	86.92	94.21	77.83	118.59	61.4
Merged-chr6-31115055-3	chr6	31114954	31115154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51961.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	49.26	42.26	62.18	58.32	38.46	75.57	37.87	42.45	100.7	79.83	83.41	58.89
Merged-chr3-127790982-3	chr3	127790886	127791086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 1 of 2)	intron (NM_001356430, intron 1 of 2)	329.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	107.41	128.78	100.4	102.56	118.23	161.8	165.75	130.79	112.9	122.01	120.09	52.32
Merged-chr3-105047808-3	chr3	105047703	105047903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	B4A|SINE|B4	5150.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	50.88	34.46	54.19	34.99	47.46	43.27	28.9	44.92	44.06	32.64	49.75	24.75
Merged-chr14-30579314-3	chr14	30579224	30579424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7175.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	14.94	20.88	16.54	30.97	23.32	21.32	28.57	47.02	55.86	58.75	67.33	45.11
Merged-chr4-119232810-3	chr4	119232715	119232915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286148)	promoter-TSS (NM_001286148)	-91.0	NM_001012400	230696.0	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	202.3	182.61	219.63	198.69	202.92	278.14	151.8	186.31	239.76	265.61	285.41	134.39
Merged-chr9-65346674-3	chr9	65346583	65346783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016688, exon 1 of 5)	exon (NM_016688, exon 1 of 5)	615.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	37.55	45.53	37.08	11.66	31.09	46.41	23.25	26.64	53.5	41.67	51.25	36.97
Merged-chr10-105841260-3	chr10	105841137	105841337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025602)	promoter-TSS (NM_025602)	143.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	98.53	148.65	89.56	126.69	131.73	148.01	192.99	145.04	128.44	156.66	164.31	107.76
Merged-chr5-72225314-3	chr5	72225211	72225411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21968.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	40.78	38.48	37.65	54.3	52.37	31.98	45.18	59.8	41.89	39.67	57.79	28.51
Merged-chr9-122122306-3	chr9	122122203	122122403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	4844.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	34.73	31.19	31.38	49.47	33.55	27.28	22.92	40.29	30.49	25.11	38.19	22.87
Merged-chr3-87338126-3	chr3	87338024	87338224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-19757.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	72.68	78.48	96.41	88.48	86.73	117.59	70.42	88.93	108.18	104.44	109.54	99.62
Merged-chr11-107451311-3	chr11	107451206	107451406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	19414.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	28.27	15.85	42.78	46.66	41.32	33.87	74.41	80.02	32.45	33.64	52.76	29.13
Merged-chr11-78983064-3	chr11	78982930	78983130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1894.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	37.96	39.74	34.23	37.4	49.5	40.45	30.89	44.69	26.95	33.64	42.21	32.58
Merged-chr15-103305297-3	chr15	103305204	103305404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5134.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	175.65	173.55	149.46	158.47	160.78	186.89	103.31	128.61	215.18	220.93	197.98	132.2
Merged-chr18-35939734-3	chr18	35939619	35939819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25111.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	27.86	26.16	24.53	24.53	34.36	34.18	23.58	19.32	34.22	43.68	23.11	19.42
Merged-chr7-104353437-3	chr7	104353348	104353548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-90.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	91.26	66.15	80.43	115.03	97.37	103.79	73.08	82.35	135.52	92.89	186.92	57.33
Merged-chr2-153239203-3	chr2	153239107	153239307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	2151.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	21.4	13.58	27.38	17.7	40.09	57.7	33.55	33.17	31.86	43.18	35.68	23.81
Merged-chr13-41381625-3	chr13	41381534	41381734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-22633.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	23.02	14.09	26.24	37.81	32.73	17.25	24.58	36.17	18.69	21.59	24.12	18.48
Merged-chr1-66279815-1	chr1	66279715	66279915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039934, intron 3 of 14)	intron (NM_001039934, intron 3 of 14)	-41909.0	NM_001310634	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	39.17	60.62	73.02	82.45	2.45	1.25	1.33	2.97	0.0	0.5	6.03	3.13
Merged-chr11-88955470-3	chr11	88955377	88955577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029023)	promoter-TSS (NM_029023)	-35.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	81.57	63.39	64.46	72.4	76.5	98.15	42.19	75.62	128.44	100.42	149.74	74.87
Merged-chr9-45269145-3	chr9	45269044	45269244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008348)	promoter-TSS (NM_008348)	5.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	54.11	63.13	55.9	47.06	48.27	108.18	30.23	40.12	61.56	65.27	84.42	23.18
Merged-chr16-24624613-3	chr16	24624533	24624733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95319.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	90.05	72.19	83.86	85.27	65.05	92.82	55.8	58.32	81.82	72.3	83.91	48.87
Merged-chr1-86487547-3	chr1	86487417	86487617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-39040.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	140.52	151.17	104.96	113.82	147.28	174.35	104.3	100.65	177.22	247.54	205.01	97.74
Merged-chr19-21818250-3	chr19	21818158	21818358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	39918.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	18.98	18.11	35.37	25.34	34.36	21.01	27.57	32.94	41.5	17.57	34.17	23.49
Merged-chr17-31658826-3	chr17	31658682	31658882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357907)	promoter-TSS (NM_001357907)	-18.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	125.98	110.17	105.53	92.1	120.69	128.88	79.06	98.72	134.93	144.1	150.24	78.0
Merged-chr11-59544184-3	chr11	59544093	59544293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	1507.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	91.66	70.18	55.33	46.66	79.78	119.16	57.13	39.0	123.91	128.04	69.34	32.27
Merged-chr2-44953199-3	chr2	44953101	44953301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69976.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	62.99	45.78	74.16	50.27	76.91	102.54	91.35	84.45	80.45	81.34	83.91	35.09
Merged-chr1-143777180-3	chr1	143777078	143777278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-100.0	NM_001159866	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	233.39	225.12	231.03	229.66	238.51	302.6	250.79	291.28	328.86	323.86	453.74	206.44
Merged-chr19-43679742-3	chr19	43679635	43679835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4557.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	71.47	63.13	100.97	122.27	49.09	53.93	44.84	72.25	60.78	62.26	100.5	38.22
Merged-chr16-92400206-3	chr16	92400101	92400301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-123.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	126.39	135.07	132.92	143.99	142.78	190.03	169.74	180.9	157.55	202.85	188.43	96.8
Merged-chr9-63132938-3	chr9	63132809	63133009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14071.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	67.43	50.31	69.6	40.22	73.64	81.53	29.9	76.96	59.99	54.73	69.85	30.07
Merged-chr13-94849547-2	chr13	94849438	94849638	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26089.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	4.04	2.01	5.13	0.8	20.05	39.51	31.56	34.99	35.8	23.6	43.21	32.27
Merged-chr13-93996652-3	chr13	93996553	93996753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61143.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	37.96	33.7	65.03	46.66	51.55	57.7	38.2	60.25	65.69	41.67	57.28	31.01
Merged-chr6-145341419-3	chr6	145341320	145341520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-46205.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	37.55	57.85	63.89	59.93	45.82	78.71	61.12	65.41	100.51	64.27	142.71	63.91
Merged-chr11-70791769-3	chr11	70791655	70791855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	20806.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	30.28	25.4	27.38	32.58	58.09	36.69	29.9	28.32	37.37	39.16	33.67	28.19
Merged-chr2-158144479-3	chr2	158144380	158144580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1912.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	59.76	36.22	73.02	57.11	61.77	85.29	57.47	98.41	83.99	68.79	138.18	48.24
Merged-chr4-115828045-3	chr4	115827950	115828150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175308)	promoter-TSS (NM_175308)	-42.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	41.99	33.2	55.9	40.22	42.96	44.21	32.55	36.7	61.56	37.16	68.84	38.53
Merged-chr7-4915414-3	chr7	4915311	4915511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170759, intron 1 of 2)	CpG	194.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	60.57	71.69	42.21	75.61	43.36	52.05	63.44	46.09	46.81	62.76	44.72	46.99
Merged-chr12-99965159-3	chr12	99965052	99965252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164427, intron 1 of 2)	intron (NM_001164427, intron 1 of 2)	653.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	23.82	9.81	21.68	20.91	22.5	16.62	24.91	29.07	23.21	8.54	37.18	17.23
Merged-chr15-64046062-3	chr15	64045969	64046169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13695.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	60.17	52.82	58.19	41.02	51.55	91.25	34.21	51.39	71.4	81.84	87.93	21.3
Merged-chr15-38384874-3	chr15	38384769	38384969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84158.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	177.67	179.59	195.1	213.17	199.23	201.31	196.65	219.48	238.19	245.03	300.48	139.72
Merged-chr2-144594057-3	chr2	144593981	144594181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033297)	promoter-TSS (NM_001033297)	16.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	36.75	29.18	36.51	40.62	65.46	44.21	40.19	61.29	53.11	38.66	66.33	42.29
Merged-chr16-38395305-3	chr16	38395195	38395395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_134102)	TTS (NM_134102)	33105.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	29.88	23.64	19.97	24.94	37.64	27.28	36.54	35.05	61.96	58.24	70.35	30.7
Merged-chr5-43782183-5	chr5	43782104	43782304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159963)	promoter-TSS (NM_001159963)	-55.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	27.46	15.09	22.25	20.91	38.05	41.39	26.24	14.78	63.53	59.75	64.82	38.22
Merged-chr12-85490124-2	chr12	85490022	85490222	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16232.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.06	3.27	1.14	2.41	12.68	12.86	15.28	15.59	24.19	7.53	8.04	11.59
Merged-chr11-60835338-2	chr11	60835234	60835434	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1|LTR|ERVL-MaLR	4703.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	33.55	31.36	17.94	24.22	34.42	40.67	37.69	29.13
Merged-chr10-68723829-3	chr10	68723747	68723947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177794, exon 1 of 6)	5' UTR (NM_177794, exon 1 of 6)	101.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	25.04	28.67	49.63	37.0	35.59	35.12	23.92	45.25	74.35	55.73	107.53	49.5
Merged-chr12-51377469-3	chr12	51377373	51377573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029825)	promoter-TSS (NM_029825)	-40.0	NM_001306178	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	129.21	131.55	176.27	153.24	154.64	174.35	129.55	203.58	132.76	124.02	198.98	100.87
Merged-chr14-52279106-1	chr14	52279006	52279206	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023434)	promoter-TSS (NM_023434)	-40.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	48.86	35.72	33.66	36.6	78.14	61.46	33.55	42.59	100.51	75.82	114.06	63.59
Merged-chr6-13606513-3	chr6	13606418	13606618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	1580.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	23.82	19.87	29.66	21.32	22.09	22.58	16.61	24.14	22.82	25.61	24.62	13.47
Merged-chr12-79172149-3	chr12	79172087	79172287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	CpG	271.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	33.52	23.64	30.23	22.12	43.36	66.48	39.86	46.04	31.08	34.14	51.76	20.05
Merged-chrX-48463046-4	chrX	48462916	48463116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	116.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	20.19	26.91	25.67	33.38	26.18	31.04	45.51	26.38	18.49	27.11	25.63	22.24
Merged-chr11-106106361-3	chr11	106106258	106106458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	21456.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	25.04	18.11	22.82	20.11	17.18	25.09	19.6	22.65	29.7	15.57	34.67	20.36
Merged-chr2-164746027-3	chr2	164745952	164746152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133763)	promoter-TSS (NM_133763)	37.0	NM_133763	76233.0	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	37.96	36.22	34.8	26.55	35.59	45.15	36.21	20.47	46.81	38.66	29.65	13.78
Merged-chr1-180813662-3	chr1	180813573	180813773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008210)	promoter-TSS (NM_008210)	-68.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	96.51	110.67	146.04	101.76	146.46	161.8	120.25	101.75	180.17	210.38	195.97	133.14
Merged-chr19-42170590-3	chr19	42170503	42170703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177319)	promoter-TSS (NM_177319)	36.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	56.13	42.01	31.95	32.98	61.37	62.09	32.55	51.06	62.55	57.24	66.33	29.76
Merged-chr2-18835696-3	chr2	18835585	18835785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33867.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	32.71	29.93	27.95	36.6	34.77	34.81	22.26	37.09	27.93	34.65	45.73	31.01
Merged-chr4-62681624-3	chr4	62681524	62681724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	7650.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	39.17	42.26	50.2	40.22	49.5	47.35	52.48	64.37	46.22	38.16	44.72	26.63
Merged-chr17-43137996-3	chr17	43137902	43138102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20289.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	183.32	158.21	179.69	203.11	172.64	190.03	157.12	170.1	178.99	188.29	233.15	121.86
Merged-chr10-127380589-3	chr10	127380486	127380686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359244)	promoter-TSS (NM_001359244)	-82.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	83.59	72.19	58.76	49.47	111.69	113.51	67.43	80.64	139.06	151.64	144.21	71.42
Merged-chr2-119897222-3	chr2	119897129	119897329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	1.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	103.78	86.02	71.31	109.4	123.96	96.27	63.44	94.12	94.02	116.49	91.45	58.27
Merged-chr11-103992867-3	chr11	103992760	103992960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25989.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	24.23	22.89	15.97	21.72	51.96	46.1	42.19	40.29	37.37	41.67	43.72	34.15
Merged-chrX-159638677-3	chrX	159638544	159638744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	11372.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	51.69	50.56	60.47	37.0	56.46	66.16	47.17	57.65	54.29	54.23	65.32	42.6
Merged-chr14-76402752-3	chr14	76402657	76402857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12204.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	33.92	23.39	22.82	49.87	24.96	25.4	19.6	34.91	26.55	20.08	32.16	20.05
Merged-chr4-103119376-3	chr4	103119268	103119468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039081)	promoter-TSS (NM_001039081)	-22.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	57.34	43.01	39.93	39.42	35.18	46.41	35.21	31.74	60.78	65.78	83.91	28.82
Merged-chr10-57792620-3	chr10	57792524	57792724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1920.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	35.13	33.7	43.93	37.81	52.77	49.54	51.15	43.43	46.62	24.6	44.22	24.12
Merged-chr19-5610025-5	chr19	5609892	5610092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037603)	promoter-TSS (NR_037603)	102.0	NM_001199249	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	35.53	50.05	30.8	39.01	29.46	50.8	19.93	15.42	42.88	50.71	41.2	30.7
Merged-chr9-65580230-3	chr9	65580121	65580321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153119)	promoter-TSS (NM_153119)	-134.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	149.0	127.52	158.02	143.18	168.55	210.41	142.5	148.12	200.62	213.9	258.28	133.45
Merged-chr4-97751941-3	chr4	97751853	97752053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	CpG	-25673.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	46.84	50.81	69.03	65.96	64.64	52.68	47.17	62.36	63.92	55.73	88.44	35.4
Merged-chr2-129387823-4	chr2	129387751	129387951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16712.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	36.75	28.67	17.11	22.52	19.64	48.29	19.6	12.93	40.32	49.71	40.7	14.72
Merged-chr13-111655479-3	chr13	111655387	111655587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30691.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	49.26	35.21	64.46	48.26	28.64	34.49	36.21	50.13	35.8	24.1	31.66	21.62
Merged-chr5-30887457-3	chr5	30887339	30887539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1413.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	38.36	29.43	20.54	26.55	30.68	26.97	13.62	27.5	34.42	35.65	50.75	26.63
Merged-chr13-81163326-1	chr13	81163226	81163426	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	199252.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	1.14	2.01	0.82	2.82	10.96	7.85	0.79	0.5	6.03	0.94
Merged-chr14-70107149-3	chr14	70106990	70107190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	6997.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	6.46	13.08	10.27	2.01	8.59	16.93	13.29	13.68	25.77	34.14	37.69	15.04
Merged-chr2-154892807-3	chr2	154892670	154892870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026030, exon 1 of 9)	5' UTR (NM_026030, exon 1 of 9)	136.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	63.8	66.91	82.15	55.1	70.77	76.2	50.16	24.81	82.41	93.89	89.44	66.41
Merged-chr6-124723816-3	chr6	124723728	124723928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-5438.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	85.2	96.59	81.58	52.29	135.41	156.16	111.28	80.41	136.5	157.66	147.73	69.55
Merged-chr3-79174216-3	chr3	79174129	79174329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28354.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	29.07	23.14	18.25	22.93	32.32	26.65	25.58	25.15	42.29	29.62	41.2	23.81
Merged-chr4-46485851-3	chr4	46485743	46485943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3486.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	22.61	24.9	30.8	22.52	45.41	29.48	20.59	36.34	34.03	37.66	64.32	26.94
Merged-chr13-21716831-3	chr13	21716731	21716931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	419.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	52.09	49.3	49.63	61.54	59.32	56.13	42.52	38.83	73.76	53.73	71.35	48.87
Merged-chr9-35056795-3	chr9	35056693	35056893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-59935.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	38.76	27.92	58.76	37.81	41.32	41.71	34.21	39.17	55.07	52.22	59.8	29.45
Merged-chr1-88654883-3	chr1	88654793	88654993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47298.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	25.44	30.94	31.95	28.96	34.36	43.9	30.56	50.1	50.35	48.2	32.66	19.42
Merged-chr2-22724302-3	chr2	22724229	22724429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-49998.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	35.53	47.54	55.9	44.24	55.23	63.66	75.73	53.3	49.57	59.75	70.85	49.81
Merged-chr12-111946207-1	chr12	111946107	111946307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1725.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	18.57	18.11	5.7	21.32	2.86	0.94	1.99	0.42	2.16	9.04	4.52	2.19
Merged-chr5-21412281-3	chr5	21412188	21412388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	12389.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	60.17	51.81	58.76	65.16	72.41	52.99	58.79	83.5	84.38	70.29	88.44	41.04
Merged-chr3-97211401-3	chr3	97211297	97211497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029933, intron 7 of 9)	intron (NM_029933, intron 7 of 9)	15967.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	98.53	111.93	140.9	141.57	70.37	98.15	101.64	112.35	115.26	111.97	130.65	88.65
Merged-chr4-108301181-3	chr4	108301091	108301291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033634)	promoter-TSS (NM_001033634)	-101.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	79.55	88.79	85.0	94.52	118.23	129.19	64.77	106.32	126.86	130.05	147.23	80.51
Merged-chr19-11912287-3	chr19	11912199	11912399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172635)	promoter-TSS (NM_172635)	-100.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	128.81	124.25	100.4	88.48	119.05	168.39	85.04	103.32	150.47	150.13	99.49	81.14
Merged-chr12-33314194-4	chr12	33314035	33314235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	11620.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	17.36	8.8	19.97	11.66	5.73	33.55	16.61	10.21	16.33	21.09	22.11	9.08
Merged-chr3-52088588-3	chr3	52088497	52088697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16409.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	64.61	45.02	91.27	104.57	72.41	83.1	88.36	129.7	81.63	63.27	108.54	60.15
Merged-chr9-14835533-3	chr9	14835434	14835634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-24676.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	90.05	115.95	104.96	113.82	161.6	163.37	115.93	151.32	164.63	117.49	148.73	102.75
Merged-chr6-134243756-3	chr6	134243648	134243848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-152581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	22.21	20.12	26.81	17.29	22.91	35.12	22.26	20.86	29.11	24.1	41.71	14.72
Merged-chr13-97858087-3	chr13	97857989	97858189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106977.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	39.57	44.77	62.18	83.66	42.14	28.54	58.13	63.62	47.21	46.7	73.36	47.62
Merged-chr2-136891127-2	chr2	136891043	136891243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028201)	promoter-TSS (NM_028201)	-75.0	NM_028201	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	39.17	50.31	38.79	50.68	52.37	51.74	59.13	58.96	94.21	103.43	123.61	67.04
Merged-chr10-8065898-3	chr10	8065798	8065998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109775.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	50.07	46.53	98.12	90.9	63.0	63.97	53.81	87.93	75.92	55.73	85.92	62.97
Merged-chr2-102942240-3	chr2	102942122	102942322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	133.25	111.43	132.92	130.31	139.1	146.44	116.59	114.7	136.11	142.1	135.67	81.45
Merged-chr2-49417181-3	chr2	49417090	49417290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34296.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	116.29	103.63	126.64	149.62	115.37	103.79	97.99	142.23	111.52	105.94	130.14	104.94
Merged-chr6-89643967-3	chr6	89643865	89644065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-23.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	43.21	58.61	49.63	62.34	98.59	87.8	53.48	82.4	86.94	73.31	107.53	65.47
Merged-chr6-53573255-3	chr6	53573116	53573316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-158.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	83.59	59.11	74.73	85.27	105.55	101.28	89.02	106.35	82.41	95.4	102.0	57.33
Merged-chr10-80173073-3	chr10	80172974	80173174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152857)	TTS (NR_152857)	130.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	60.57	58.35	71.31	51.08	77.73	78.39	68.1	46.6	75.53	86.36	62.81	48.56
Merged-chr2-119548265-2	chr2	119548163	119548363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172857)	promoter-TSS (NM_172857)	556.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	18.57	9.56	21.11	29.76	22.5	23.2	16.61	20.83	3.54	1.51	1.51	4.7
Merged-chr12-110840962-3	chr12	110840840	110841040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	-1.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	43.61	29.18	43.93	30.97	25.77	30.42	13.95	22.85	40.12	44.69	35.68	19.42
Merged-chr2-90545462-3	chr2	90545361	90545561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35186.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	84.39	92.06	60.47	57.92	74.87	158.67	69.42	52.04	118.6	155.15	89.44	39.78
Merged-chr16-91545152-3	chr16	91545047	91545247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-1947.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	20.19	26.16	44.5	30.97	24.55	31.67	17.61	27.48	36.78	38.16	54.77	38.22
Merged-chr13-100183310-3	chr13	100183213	100183413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 5 of 15)	intron (NM_001126182, intron 5 of 15)	18809.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	38.76	52.32	65.03	44.24	82.64	92.19	86.03	69.84	79.07	70.29	83.91	53.88
Merged-chr10-34096684-3	chr10	34096600	34096800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178908)	promoter-TSS (NM_178908)	-181.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	31.5	37.98	38.22	40.62	46.23	53.31	42.19	54.73	41.3	32.13	49.75	24.75
Merged-chr17-39847222-3	chr17	39847132	39847332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	4235.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	348.07	403.2	251.57	331.41	108.82	118.84	68.1	31.82	95.2	91.89	87.43	115.28
Merged-chr7-98415666-3	chr7	98415558	98415758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24758.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	56.53	44.27	73.59	48.26	64.23	68.99	43.18	52.09	46.81	48.7	33.16	27.25
Merged-chr12-35153226-2	chr12	35153129	35153329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41668.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	27.05	16.85	29.09	21.72	31.5	34.18	19.6	30.36	1.77	0.0	0.5	2.51
Merged-chr12-69371506-2	chr12	69371416	69371616	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-634.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	20.19	22.13	22.82	24.53	30.27	43.9	19.93	39.11	21.05	33.64	35.17	26.0
Merged-chr9-56962594-3	chr9	56962483	56962683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	11659.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	43.21	28.17	53.62	35.8	44.59	64.28	25.91	27.73	49.96	34.65	29.65	14.1
Merged-chr10-82178538-4	chr10	82178433	82178633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	50520.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	39.57	52.32	35.37	62.74	39.68	35.12	60.79	40.43	43.66	57.24	71.86	42.92
Merged-chr7-83720497-3	chr7	83720393	83720593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 2 of 18)	intron (NM_001360088, intron 2 of 18)	11905.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	33.11	18.61	23.96	25.34	20.05	17.25	12.29	16.4	40.32	41.17	65.83	34.15
Merged-chr10-94909552-3	chr10	94909469	94909669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35009.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	58.55	70.93	90.7	80.04	74.05	112.26	87.69	93.81	121.95	98.91	112.05	67.04
Merged-chr15-75062325-3	chr15	75062201	75062401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13464.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	26.25	20.88	33.66	36.2	24.14	20.38	12.62	4.96	39.73	35.65	45.73	25.06
Merged-chr5-140642263-3	chr5	140642151	140642351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6780.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	64.61	49.55	55.9	61.94	80.59	65.54	58.13	79.63	91.07	87.87	96.98	61.4
Merged-chr4-122836241-3	chr4	122836146	122836346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	19.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	33.11	16.85	27.38	18.5	28.23	36.69	9.63	24.93	24.59	39.67	37.18	13.16
Merged-chr11-75047945-3	chr11	75047836	75048036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18055.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	96.91	58.35	144.33	110.6	107.59	125.43	158.11	142.99	130.4	63.77	190.44	83.64
Merged-chr4-152165226-3	chr4	152165117	152165317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6350.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	17.36	12.58	19.4	25.74	19.64	23.2	12.62	20.47	20.46	29.12	28.14	16.29
Merged-chr16-23287479-3	chr16	23287380	23287580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	70.66	69.92	91.27	88.08	76.91	86.86	66.77	124.43	89.1	80.34	134.16	59.21
Merged-chr3-79287307-3	chr3	79287202	79287402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-58074.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	149.0	133.81	151.74	166.11	200.05	166.19	119.91	200.52	188.82	139.59	259.28	108.7
Merged-chr15-6260508-3	chr15	6260412	6260612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39277.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	69.05	65.9	66.74	89.29	87.55	91.88	79.72	100.77	62.74	46.7	84.42	49.18
Merged-chr17-48247693-3	chr17	48247587	48247787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021407)	promoter-TSS (NM_021407)	-42.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	55.32	46.03	53.05	53.49	66.27	80.9	47.5	70.32	62.94	69.29	78.39	38.22
Merged-chr12-102367310-3	chr12	102367264	102367464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	72449.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	45.23	25.66	119.8	56.71	76.09	57.07	115.6	142.51	68.25	65.27	88.94	42.92
Merged-chr5-5232737-3	chr5	5232646	5232846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 3 of 14)	L1_Mur3|LINE|L1	33322.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	52.09	52.82	38.22	35.8	35.59	63.34	30.23	40.74	22.23	27.62	36.18	21.93
Merged-chr3-97824124-3	chr3	97823996	97824196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-56082.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	48.86	48.29	45.64	47.46	46.23	74.94	36.54	38.02	52.12	67.28	65.83	21.3
Merged-chr1-172311451-3	chr1	172311385	172311585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-882.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	117.1	79.99	126.64	98.54	101.87	124.8	86.36	113.16	85.95	72.81	85.92	44.17
Merged-chr13-62558543-3	chr13	62558472	62558672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	57.0	NM_175252	77117.0	Mm.440905	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	20.19	32.7	45.07	48.67	25.36	23.52	54.14	1.29	24.98	19.58	29.65	18.48
Merged-chr19-8941882-3	chr19	8941789	8941989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-31.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	110.24	102.87	86.14	76.82	96.55	111.32	52.82	72.56	125.09	75.82	92.96	50.75
Merged-chr1-60158602-3	chr1	60158484	60158684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22015.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	23.42	21.38	25.67	30.16	20.46	24.46	17.61	21.64	35.8	17.57	39.7	21.3
Merged-chr15-58875976-3	chr15	58875866	58876066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3317.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	46.44	66.65	48.49	71.99	46.23	63.03	48.16	56.86	66.09	52.22	62.31	41.04
Merged-chr19-4811156-3	chr19	4811056	4811256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019869, intron 1 of 2)	CpG	478.0	NM_001290127	102902673.0	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	35.13	34.96	31.38	39.42	39.68	32.3	22.59	28.68	35.99	56.24	42.71	25.69
Merged-chr15-10834253-1	chr15	10834153	10834353	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5202.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	2.42	2.52	6.28	6.44	4.5	0.0	10.96	12.9	1.77	6.53	6.03	3.76
Merged-chr2-22746962-3	chr2	22746848	22747048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27379.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	94.08	81.24	95.84	77.22	61.37	79.33	60.79	63.06	84.18	77.83	66.33	37.28
Merged-chr19-10914511-3	chr19	10914410	10914610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009580, intron 11 of 11)	intron (NM_009580, intron 11 of 11)	6091.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	38.76	32.45	27.95	25.74	31.09	67.42	28.9	28.4	45.63	40.67	52.26	25.69
Merged-chr18-33794828-3	chr18	33794730	33794930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-62.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	81.97	76.97	69.03	108.59	106.78	131.39	85.04	104.02	99.33	97.41	114.57	65.47
Merged-chr9-96395317-3	chr9	96395239	96395439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30908.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	56.13	20.88	52.48	45.05	64.64	52.37	66.77	67.43	92.44	83.85	111.55	54.82
Merged-chr5-31180038-3	chr5	31179903	31180103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027901, exon 1 of 19)	5' UTR (NM_027901, exon 1 of 19)	141.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	50.88	56.09	36.51	48.26	50.32	62.09	43.51	41.16	66.09	55.23	66.83	48.56
Merged-chr17-56133957-3	chr17	56133871	56134071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-119.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	112.66	87.78	134.63	125.89	133.78	146.12	138.85	139.74	154.4	176.74	202.0	118.1
Merged-chr2-167361810-3	chr2	167361689	167361889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12611.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	25.04	19.37	27.38	23.33	36.82	33.24	22.92	31.26	42.68	39.16	35.68	20.68
Merged-chrX-101639946-3	chrX	101639829	101640029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139144)	promoter-TSS (NM_139144)	-122.0	NM_139144	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	53.3	48.04	60.47	53.89	63.41	66.16	61.78	50.89	81.23	79.33	73.36	37.59
Merged-chr17-16951480-3	chr17	16951384	16951584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112619.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	81.16	98.1	103.25	142.78	91.23	100.97	101.31	114.42	118.41	143.6	201.5	101.19
Merged-chr2-141008623-3	chr2	141008531	141008731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-337155.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	26.25	17.36	33.66	34.59	24.96	28.22	18.6	31.04	36.19	30.13	27.13	28.19
Merged-chr12-3791968-3	chr12	3791873	3792073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15007.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	90.45	109.16	86.14	80.84	110.87	121.67	86.03	84.25	95.2	138.08	121.1	77.06
Merged-chr12-73716035-3	chr12	73715934	73716134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	131238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	27.05	20.88	28.52	14.08	59.32	85.29	69.76	58.77	45.63	39.16	54.27	38.53
Merged-chr11-120347949-1	chr11	120347849	120348049	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	-536.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	64.61	49.55	27.95	25.34	13.09	56.44	5.98	6.25	66.09	91.89	31.66	31.33
Merged-chr15-59552645-3	chr15	59552567	59552767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-95987.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	55.32	62.13	63.89	61.54	86.32	87.17	44.84	73.57	63.73	77.32	67.33	51.38
Merged-chr11-78536303-3	chr11	78536207	78536407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	-47.0	NM_009395	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	156.27	173.3	181.41	152.43	176.32	234.24	141.17	151.35	208.1	227.45	167.83	133.14
Merged-chr12-32208703-3	chr12	32208599	32208799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-50.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	58.55	57.1	50.77	93.71	70.77	70.87	48.83	77.36	70.22	81.34	99.49	84.58
Merged-chr6-13069800-3	chr6	13069719	13069919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	60.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	125.98	161.73	159.73	167.72	154.23	138.29	149.81	167.3	213.21	184.77	233.65	112.15
Merged-chr2-4453223-3	chr2	4453123	4453323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	52247.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	79.55	60.37	100.4	67.57	49.09	63.34	101.98	82.43	106.21	101.93	175.37	53.57
Merged-chr9-80547382-1	chr9	80547282	80547482	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81944.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	3.23	1.01	5.13	8.04	2.05	1.25	6.98	8.13	0.2	0.0	1.51	0.0
Merged-chr16-55750220-3	chr16	55750138	55750338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71900.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	14.94	15.34	12.55	20.11	22.5	23.83	13.29	20.52	25.18	17.07	35.17	14.72
Merged-chr12-111376262-3	chr12	111376170	111376370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1448.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	31.9	25.91	29.66	18.9	17.18	22.58	14.62	27.31	20.46	25.11	33.67	17.86
Merged-chr18-36744598-3	chr18	36744500	36744700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011879)	promoter-TSS (NM_011879)	-13.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	113.87	108.16	92.98	100.15	135.0	133.9	94.34	90.03	130.4	137.58	213.56	76.75
Merged-chr1-88224659-1	chr1	88224559	88224759	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-2361.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	8.08	12.07	10.84	16.49	27.82	18.5	12.95	9.9	21.64	17.07	25.63	12.84
Merged-chr13-115090202-3	chr13	115090094	115090294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-36.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	132.85	104.38	118.08	104.57	149.32	134.84	124.9	157.68	209.87	183.77	217.57	102.12
Merged-chr2-130284410-3	chr2	130284310	130284510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130884)	promoter-TSS (NM_130884)	41.0	NM_130884	170718.0	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	26.65	25.66	19.97	25.34	20.05	38.88	12.62	29.72	37.37	23.1	42.21	15.66
Merged-chr11-77983736-3	chr11	77983698	77983898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174852, intron 1 of 14)	intron (NM_174852, intron 1 of 14)	982.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	9.69	14.34	5.7	4.42	18.0	18.5	9.97	11.75	18.69	14.06	23.62	11.9
Merged-chr17-29614867-3	chr17	29614766	29614966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132314)	promoter-TSS (NR_132314)	77.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	47.65	28.67	42.21	39.82	45.0	51.74	37.54	41.02	51.73	48.7	47.23	42.92
Merged-chr14-54754132-3	chr14	54754038	54754238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27748.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	24.63	20.63	19.97	19.31	26.18	28.85	14.62	28.29	41.7	29.62	32.16	33.52
Merged-chr2-6366862-3	chr2	6366771	6366971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14135.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	58.95	34.21	51.34	48.26	63.0	55.5	60.46	74.72	57.24	58.24	70.85	40.41
Merged-chr17-71287790-3	chr17	71287702	71287902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	23209.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	33.52	18.36	35.94	30.16	47.46	51.11	45.84	68.83	31.47	42.68	38.69	33.21
Merged-chr4-137610466-3	chr4	137610366	137610566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	16294.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	52.9	22.39	39.93	34.99	46.64	47.66	35.87	47.3	49.76	41.67	29.65	20.99
Merged-chr12-25100864-1	chr12	25100764	25100964	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4772.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	23.42	24.15	19.97	27.35	21.27	23.52	20.26	23.72	20.65	35.15	28.64	21.62
Merged-chr11-61762107-3	chr11	61761973	61762173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164242)	promoter-TSS (NM_001164242)	15.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	62.59	64.64	41.07	39.01	74.05	98.46	45.18	45.53	100.51	92.89	71.35	43.23
Merged-chr19-34290450-3	chr19	34290388	34290588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146708)	promoter-TSS (NM_001146708)	-171.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	26.25	36.47	37.08	5.23	35.59	65.22	37.54	16.54	57.63	53.22	28.64	15.98
Merged-chr11-55155223-3	chr11	55155121	55155321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3515.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	36.75	33.45	41.64	60.33	55.23	51.74	40.86	55.01	63.53	35.65	72.86	41.98
Merged-chr11-101087283-3	chr11	101087175	101087375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011550)	promoter-TSS (NM_011550)	-15.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	44.82	34.71	38.79	23.73	36.0	40.45	13.29	35.13	61.37	39.67	58.29	23.81
Merged-chr2-157501527-3	chr2	157501426	157501626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58552.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	18.57	31.19	33.09	25.34	62.18	59.58	41.19	50.61	57.83	92.89	64.32	46.05
Merged-chr5-66015740-3	chr5	66015642	66015842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001127382)	TTS (NM_001127382)	-11457.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	51.69	43.01	43.35	34.19	59.73	81.22	46.84	56.72	69.43	94.4	72.36	32.89
Merged-chr17-88123891-3	chr17	88123807	88124007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1605.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	111.85	83.76	97.55	94.52	89.18	147.38	81.71	85.71	156.56	173.23	164.31	78.94
Merged-chr9-124423766-3	chr9	124423672	124423872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015516)	promoter-TSS (NR_015516)	-15.0	NR_102721	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	146.98	130.04	130.06	117.44	120.69	159.29	101.64	117.39	213.41	237.5	226.62	134.08
Merged-chr12-103341834-3	chr12	103341732	103341932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14169.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	19.79	20.88	11.41	19.71	20.86	12.54	12.95	17.86	25.37	14.06	26.13	14.41
Merged-chr19-9982709-4	chr19	9982691	9982891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073181, exon 2 of 5)	non-coding (NR_073181, exon 2 of 5)	145.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	173.23	155.7	140.33	100.95	149.73	230.16	112.94	124.32	178.79	241.01	219.08	88.65
Merged-chrX-12813380-3	chrX	12813300	12813500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045852, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	51122.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	90.85	85.77	106.68	110.6	104.73	95.01	85.7	137.3	142.01	142.1	196.97	94.29
Merged-chr12-119484129-3	chr12	119484030	119484230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40720.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	78.34	78.73	73.02	89.69	71.59	96.58	60.46	95.13	146.34	155.15	111.55	77.06
Merged-chr1-92052419-3	chr1	92052316	92052516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	127925.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	46.03	28.93	46.21	55.5	46.64	47.66	40.52	68.8	33.44	28.62	33.67	29.13
Merged-chr14-115042163-3	chr14	115042053	115042253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1518.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	79.14	71.69	67.88	80.44	79.78	111.32	90.35	102.51	112.51	113.48	116.58	51.69
Merged-chr16-93883835-3	chr16	93883747	93883947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028083)	promoter-TSS (NM_028083)	-54.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	160.31	130.54	135.2	101.76	172.64	189.08	71.08	118.09	216.16	247.04	225.61	129.69
Merged-chr11-45955259-3	chr11	45955202	45955402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	-114.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	62.99	115.45	65.6	63.15	76.91	100.66	69.42	50.05	79.46	114.48	109.54	53.88
Merged-chr1-105965394-3	chr1	105965302	105965502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24880.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	144.56	138.09	205.36	191.04	201.28	239.26	165.75	219.51	188.62	170.72	238.68	150.68
Merged-chr8-119425000-3	chr8	119424899	119425099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12163.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	58.55	47.54	92.98	43.44	90.82	65.85	51.15	74.27	66.28	49.71	72.36	55.13
Merged-chr9-65294191-3	chr9	65294064	65294264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011802)	promoter-TSS (NM_011802)	-96.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	72.28	54.08	67.88	56.71	78.14	76.2	42.52	44.07	85.36	107.45	93.46	37.59
Merged-chr16-5254500-3	chr16	5254386	5254586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	1470.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	59.36	66.4	65.03	94.92	102.68	89.68	57.13	107.16	108.38	120.51	144.21	67.04
Merged-chr10-122562692-3	chr10	122562587	122562787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7204.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	37.15	39.74	59.33	40.62	39.68	47.98	53.48	67.46	64.12	51.72	86.43	46.36
Merged-chr11-103175217-3	chr11	103175111	103175311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	4073.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	24.63	25.15	7.99	13.67	48.68	49.54	18.93	21.53	32.65	35.15	27.13	16.92
Merged-chr11-118400747-3	chr11	118400640	118400840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011150, intron 1 of 5)	MLTR14|LTR|ERV1	1219.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	31.5	38.48	29.09	7.64	26.59	39.82	24.58	22.65	42.48	47.2	44.22	15.98
Merged-chr19-24280441-3	chr19	24280353	24280553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008044, exon 1 of 5)	exon (NM_008044, exon 1 of 5)	133.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	63.8	97.59	120.37	106.99	76.5	93.13	113.6	91.51	57.43	57.24	74.87	42.6
Merged-chr11-70700257-3	chr11	70700157	70700357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	-102.0	NM_001252485	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	38.36	31.44	26.81	41.43	50.32	66.79	39.86	27.9	53.89	51.72	34.67	34.77
Merged-chr6-87806239-3	chr6	87806135	87806335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	3522.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	40.78	40.24	68.45	59.53	51.55	58.64	18.93	45.76	53.89	46.19	81.4	47.3
Merged-chr16-38452731-3	chr16	38452621	38452821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007414)	promoter-TSS (NM_007414)	-32.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	105.39	88.54	128.35	99.34	131.73	121.67	93.01	133.51	127.65	133.06	233.65	71.42
Merged-chr4-135203414-3	chr4	135203304	135203504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69356.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	73.09	58.86	68.45	61.94	59.32	97.52	81.71	62.69	101.88	61.76	113.56	44.17
Merged-chr10-128303346-3	chr10	128303291	128303491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	56.0	NM_001252326	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	85.6	92.56	67.88	59.12	75.28	159.61	38.2	65.33	127.26	121.51	109.04	53.26
Merged-chr11-87757318-3	chr11	87757240	87757440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106176)	promoter-TSS (NR_106176)	-385.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	21.0	21.63	35.94	42.63	21.68	31.04	34.21	35.89	47.4	47.2	63.82	41.04
Merged-chr13-6548138-3	chr13	6548054	6548254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-3.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	243.49	245.49	248.72	310.5	288.83	358.41	302.28	387.37	370.36	296.74	555.24	182.01
Merged-chr15-37972845-3	chr15	37972747	37972947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-11792.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	34.32	18.86	26.81	17.29	27.41	31.67	12.62	40.99	27.34	20.08	39.7	33.52
Merged-chr3-106485197-3	chr3	106485111	106485311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028110)	promoter-TSS (NM_028110)	702.0	NR_033207	69206.0	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	34.32	33.2	52.48	36.2	28.23	38.57	34.21	38.27	38.75	29.12	34.67	23.49
Merged-chr17-31075658-3	chr17	31075564	31075764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17970.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	71.47	60.87	57.62	55.1	131.32	198.49	144.83	123.95	81.23	66.78	89.44	59.21
Merged-chr5-115500568-3	chr5	115500442	115500642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-6134.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	86.41	97.34	131.78	90.09	111.28	127.62	93.01	92.22	104.83	113.48	137.18	57.64
Merged-chr19-4122074-3	chr19	4121956	4122156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-481.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	47.65	41.75	46.78	37.0	48.68	53.31	45.18	38.66	72.77	67.28	72.86	32.89
Merged-chr17-74018427-3	chr17	74018338	74018538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053188, intron 4 of 4)	Lx8|LINE|L1	29478.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	39.17	20.37	36.51	45.45	78.55	57.38	55.8	85.07	68.25	61.76	69.85	66.41
Merged-chr2-31108399-3	chr2	31108302	31108502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-11902.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	47.24	31.44	53.62	36.6	27.0	37.63	21.92	32.8	23.01	17.57	35.68	22.24
Merged-chr5-129925014-3	chr5	129924912	129925112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16472.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	57.74	71.43	71.88	87.28	53.18	69.93	53.48	107.22	31.27	31.13	35.68	26.31
Merged-chr5-99334178-3	chr5	99334055	99334255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-81228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	18.98	32.7	27.38	16.49	26.59	26.03	13.62	25.4	45.24	43.18	25.63	12.53
Merged-chr19-43524632-3	chr19	43524527	43524727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-22.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	187.36	164.25	216.2	211.96	206.6	200.69	179.7	241.21	296.8	232.98	378.37	175.12
Merged-chr17-35193180-3	chr17	35193086	35193286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1321.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	47.65	47.79	39.93	63.55	56.46	51.11	42.85	33.28	27.73	39.16	22.61	16.92
Merged-chr2-126475936-3	chr2	126475849	126476049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15604.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	35.13	30.94	30.23	29.76	48.68	42.33	50.82	51.81	50.16	40.17	43.21	38.53
Merged-chr13-66905253-3	chr13	66905086	66905286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	164.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	19.79	20.88	39.93	43.84	30.27	35.43	57.47	39.34	38.94	49.21	38.19	31.33
Merged-chr19-60874534-3	chr19	60874439	60874639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007452)	promoter-TSS (NM_007452)	-1.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	116.7	129.79	135.77	137.95	151.78	179.36	145.82	181.74	172.89	141.59	226.62	61.09
Merged-chr10-88504008-3	chr10	88503901	88504101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-31.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	119.52	112.68	126.07	123.88	154.64	172.78	126.56	151.49	147.91	148.12	205.52	91.16
Merged-chr9-64811193-3	chr9	64811105	64811305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 1 of 34)	CpG	194.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	184.94	161.48	173.99	165.3	193.1	259.32	162.1	162.31	284.41	297.75	304.5	154.44
Merged-chr18-39653034-3	chr18	39652934	39653134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120463.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	51.28	56.85	62.75	41.43	47.87	88.74	36.54	33.93	67.27	44.69	65.32	23.18
Merged-chr18-89181793-3	chr18	89181694	89181894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15633.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	79.95	63.64	78.72	64.35	64.23	82.16	53.48	59.66	93.43	72.81	95.47	35.4
Merged-chr6-56923891-3	chr6	56923770	56923970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026004)	promoter-TSS (NM_026004)	62.0	NM_026004	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	147.39	167.27	153.45	151.63	230.73	225.46	177.05	215.27	223.24	184.77	283.4	141.6
Merged-chr11-115209378-3	chr11	115209274	115209474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	21887.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	47.24	47.54	60.47	48.26	36.82	26.97	22.26	40.51	62.35	61.76	55.78	36.65
Merged-chr6-134120877-3	chr6	134120780	134120980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	85180.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	31.5	27.17	55.9	36.6	29.86	50.49	39.86	39.22	49.17	60.75	103.51	43.86
Merged-chr6-142756706-3	chr6	142756600	142756800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	14.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	54.11	57.85	54.19	62.74	84.68	74.32	46.5	79.85	102.87	85.86	139.19	69.55
Merged-chr8-121590381-3	chr8	121590288	121590488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-80.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	86.82	94.83	55.9	67.17	120.28	90.62	69.42	73.09	144.37	142.1	144.21	85.84
Merged-chr16-93028869-3	chr16	93028761	93028961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-202787.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	73.89	67.41	81.58	82.85	97.37	111.95	65.44	82.71	98.74	115.99	128.13	62.97
Merged-chr1-190979327-3	chr1	190979231	190979431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144879)	promoter-TSS (NM_144879)	-35.0	NR_027352	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	16.96	12.07	17.11	16.89	16.77	30.42	20.93	31.23	37.37	27.11	36.18	14.41
Merged-chr7-100216193-3	chr7	100216093	100216293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11414.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	42.4	42.01	54.76	38.61	48.27	82.78	41.52	48.76	53.3	56.74	33.16	22.87
Merged-chr6-116227879-3	chr6	116227787	116227987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	19854.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	53.3	38.48	30.8	52.69	47.46	53.93	29.9	53.33	39.53	31.63	59.29	26.0
Merged-chr9-107563226-3	chr9	107563144	107563344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019742)	promoter-TSS (NM_019742)	-11.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	90.45	60.12	95.27	87.68	112.09	90.94	48.83	92.13	103.65	93.89	172.85	83.02
Merged-chr7-31041801-3	chr7	31041706	31041906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	33.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	16.96	19.37	15.97	28.56	38.05	39.2	21.59	46.35	40.71	46.7	64.82	31.33
Merged-chr11-107441179-3	chr11	107441080	107441280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	29540.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	48.05	33.45	71.88	34.99	57.68	55.5	63.11	47.58	82.02	72.81	74.37	32.27
Merged-chr12-91666817-3	chr12	91666699	91666899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-76312.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	27.05	25.91	47.35	45.85	38.46	38.26	31.89	54.76	41.7	39.67	53.77	30.39
Merged-chr11-75655916-3	chr11	75655823	75656023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-92.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	73.89	65.4	39.36	63.55	78.55	78.08	52.48	54.48	76.31	79.83	71.86	54.2
Merged-chr11-52076441-3	chr11	52076382	52076582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-22342.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	65.41	47.79	70.17	29.36	98.59	94.7	74.41	89.94	81.63	63.77	97.48	61.09
Merged-chr17-56507331-3	chr17	56507214	56507414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5169.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	22.21	22.64	25.1	24.94	53.59	35.75	31.22	37.04	23.8	30.63	38.19	18.8
Merged-chr16-38712865-3	chr16	38712763	38712963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020260, exon 1 of 12)	5' UTR (NM_020260, exon 1 of 12)	172.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	30.69	39.74	37.65	36.2	24.96	35.12	25.58	21.03	56.65	46.7	72.36	39.16
Merged-chr5-124483417-3	chr5	124483323	124483523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029532, intron 1 of 1)	CpG	268.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	38.76	43.77	31.95	18.1	29.86	57.7	28.23	25.26	53.11	50.21	56.28	35.71
Merged-chr13-67683570-3	chr13	67683445	67683645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-33.0	NM_001001187	408068.0	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	56.13	38.74	50.77	49.47	45.0	55.19	42.85	49.79	90.08	78.83	113.56	54.82
Merged-chr17-33718787-3	chr17	33718688	33718888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-111.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	136.08	125.51	140.33	141.17	157.5	180.3	73.41	152.24	173.68	190.8	187.93	108.39
Merged-chr19-53390705-3	chr19	53390623	53390823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356986)	promoter-TSS (NM_001356986)	-89.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	270.54	235.43	236.17	195.87	251.19	349.32	162.1	232.54	320.99	310.8	333.65	175.12
Merged-chr13-74350227-3	chr13	74350124	74350324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023281)	promoter-TSS (NM_023281)	16.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	107.81	78.98	98.12	108.59	107.19	137.97	100.65	115.99	123.32	105.94	137.68	64.85
Merged-chr13-4662563-3	chr13	4662466	4662666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53402.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	27.05	33.96	15.97	39.82	35.59	37.94	28.57	31.21	42.68	43.68	46.73	27.57
Merged-chr9-31030405-3	chr9	31030316	31030516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-228.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	109.83	110.42	121.51	115.43	94.09	121.98	149.81	111.17	114.47	137.58	171.35	97.11
Merged-chr2-34826205-3	chr2	34826117	34826317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	18.0	NM_001164770	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	55.72	54.33	57.05	35.39	38.86	65.22	37.2	49.43	91.85	69.29	74.87	42.92
Merged-chr4-108579338-3	chr4	108579254	108579454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-18.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	88.43	86.02	121.51	95.72	106.78	148.01	63.44	87.62	129.22	135.07	139.19	79.26
Merged-chr2-46443305-3	chr2	46443207	46443407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	746702.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	21.4	14.59	28.52	19.71	38.86	20.07	37.54	33.59	35.6	20.59	31.66	15.98
Merged-chr1-39583398-3	chr1	39583298	39583498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-6051.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	37.96	30.43	35.94	34.19	36.0	58.64	34.88	60.31	64.71	54.23	85.92	46.68
Merged-chr3-31084141-3	chr3	31084032	31084232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep605|LTR?|LTR?	-10926.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	95.3	88.54	114.66	94.92	112.5	171.84	129.55	113.89	170.14	161.18	139.69	73.93
Merged-chr7-29008397-2	chr7	29008310	29008510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009109, exon 101 of 106)	exon (NM_009109, exon 101 of 106)	25556.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	16.96	10.31	26.81	12.07	17.18	23.83	26.57	26.16	5.9	4.52	11.05	2.82
Merged-chr9-40651577-4	chr9	40651503	40651703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	30.69	22.89	22.25	37.0	27.41	18.5	35.21	37.35	21.83	26.11	21.1	13.47
Merged-chr17-71002596-3	chr17	71002489	71002689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-56.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	162.73	170.28	239.02	174.15	191.46	217.93	123.24	144.11	186.66	232.98	285.41	166.34
Merged-chr6-31398990-4	chr6	31398952	31399152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	224.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	25.84	27.42	35.37	18.1	23.73	35.12	32.88	29.27	40.52	50.21	42.21	36.34
Merged-chr19-40661279-3	chr19	40661183	40661383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1513.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	28.67	30.43	53.05	36.2	49.91	46.72	41.85	41.55	39.73	49.21	48.24	44.17
Merged-chr1-180568897-3	chr1	180568771	180568971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	-20.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	64.61	44.02	38.22	48.26	63.41	60.83	30.23	45.42	74.94	59.25	98.49	41.04
Merged-chr7-45707752-3	chr7	45707627	45707827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016974, intron 2 of 3)	intron (NM_016974, intron 2 of 3)	2480.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	52.49	41.25	65.6	50.27	43.77	83.41	30.23	39.73	72.97	78.83	62.31	43.86
Merged-chr5-90898633-3	chr5	90898547	90898747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5252.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	34.32	30.94	47.92	31.77	39.27	38.26	34.55	40.32	42.68	39.67	59.29	31.33
Merged-chr18-39251070-3	chr18	39250966	39251166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	236179.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	48.05	35.97	42.21	46.25	81.82	79.33	51.49	60.34	68.64	62.26	71.35	36.34
Merged-chr1-95451086-3	chr1	95450997	95451197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137469.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	53.7	49.3	85.0	86.07	92.87	85.61	73.08	126.48	86.35	69.79	85.92	48.56
Merged-chr2-128818443-1	chr2	128818343	128818543	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028248, exon 1 of 19)	exon (NM_028248, exon 1 of 19)	140.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	50.47	53.83	41.07	41.43	36.82	55.5	64.11	48.79	43.86	64.77	41.2	48.24
Merged-chr10-80943135-3	chr10	80943045	80943245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13054.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	19.79	19.87	17.68	8.85	14.32	21.32	23.58	10.93	33.63	42.68	17.59	12.53
Merged-chr15-59866893-3	chr15	59866787	59866987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	65.01	59.86	73.02	41.43	73.64	121.04	61.45	64.88	90.08	87.87	99.49	42.29
Merged-chr7-36720221-2	chr7	36720102	36720302	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22084.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.63	5.28	4.56	3.62	20.86	25.71	13.29	24.11	25.37	19.58	26.63	3.76
Merged-chr19-46502974-3	chr19	46502885	46503085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053100, exon 1 of 6)	exon (NM_053100, exon 1 of 6)	1337.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	22.21	18.11	14.83	18.9	28.64	20.38	16.61	18.53	32.85	17.07	39.7	21.3
Merged-chr4-155562175-5	chr4	155562066	155562266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138671)	promoter-TSS (NM_138671)	-215.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	20.19	28.17	33.66	22.52	32.73	46.41	48.83	29.86	61.96	52.22	33.16	47.62
Merged-chr16-37689461-3	chr16	37689369	37689569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-35101.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	31.5	44.77	45.07	50.27	48.68	42.33	51.49	62.38	61.56	49.21	69.34	35.09
Merged-chr15-73149818-3	chr15	73149699	73149899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	35148.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	22.61	25.15	21.11	13.67	31.91	28.54	23.25	34.6	42.88	36.65	56.78	29.76
Merged-chr13-23581568-3	chr13	23581468	23581668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-34.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	149.4	160.98	132.35	202.71	115.37	189.71	149.14	135.98	153.81	218.42	248.23	117.47
Merged-chr17-5189868-3	chr17	5189757	5189957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	CpG	194783.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	107.01	92.56	108.96	102.96	111.69	148.95	60.79	142.23	142.8	144.1	176.37	92.41
Merged-chr11-114989948-3	chr11	114989840	114990040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-54.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	19.38	22.64	30.8	30.57	31.91	48.29	28.23	46.93	30.68	50.71	47.23	36.97
Merged-chr11-3175435-2	chr11	3175327	3175527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	MLTR31F_MM|LTR|ERVK	18036.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	20.19	23.39	26.24	27.35	29.86	26.34	47.5	17.75	0.59	1.0	1.0	0.63
Merged-chr17-57331144-3	chr17	57331025	57331225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-27561.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	23.82	23.64	32.52	28.56	29.46	31.98	32.22	33.98	40.71	23.6	51.25	20.36
Merged-chr12-59066869-3	chr12	59066767	59066967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-52.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	142.94	132.56	177.41	147.21	190.23	260.58	148.15	215.8	273.79	178.75	305.01	120.29
Merged-chr9-107709953-3	chr9	107709845	107710045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011349, intron 1 of 17)	CpG	530.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	25.04	18.86	22.82	22.12	29.86	19.44	23.25	24.06	27.34	29.62	31.15	23.49
Merged-chr3-152782214-3	chr3	152782132	152782332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	68132.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	21.8	13.58	11.41	18.5	15.55	19.44	23.58	40.26	19.67	24.6	22.11	18.8
Merged-chr7-13038812-3	chr7	13038715	13038915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168469)	promoter-TSS (NM_001168469)	-540.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	37.55	19.87	24.53	18.5	33.55	37.32	23.92	32.16	36.39	44.19	89.94	36.65
Merged-chrX-106603575-3	chrX	106603454	106603654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021476, exon 1 of 4)	5' UTR (NM_021476, exon 1 of 4)	125.0	NM_001281862	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	43.61	33.45	57.05	64.35	54.41	37.63	40.52	70.88	51.73	30.13	60.3	32.89
Merged-chr16-36641200-3	chr16	36641110	36641310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	24867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	61.38	73.45	79.29	68.78	92.46	88.43	71.75	74.64	118.8	94.9	111.55	56.7
Merged-chr10-76468889-3	chr10	76468773	76468973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-98.0	NM_019434	54387.0	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	48.05	27.92	37.65	52.69	44.59	67.1	38.2	57.59	49.96	52.72	75.87	52.94
Merged-chr2-58166964-2	chr2	58166868	58167068	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	2994.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	20.05	15.05	16.28	22.35	13.57	7.53	24.12	5.64
Merged-chr14-99046281-3	chr14	99046176	99046376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	-101.0	NR_153765	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	140.92	193.68	211.64	212.76	212.73	279.39	203.29	256.21	270.64	189.29	348.22	141.28
Merged-chr18-54900458-3	chr18	54900359	54900559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89721.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	18.17	11.57	15.97	20.91	25.36	12.86	15.28	23.19	18.49	17.57	18.09	17.54
Merged-chr2-163995080-3	chr2	163994981	163995181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018753)	promoter-TSS (NM_018753)	-116.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	108.22	88.54	94.13	88.48	111.28	109.12	84.37	120.08	122.73	159.67	184.41	73.62
Merged-chr17-56765182-3	chr17	56765087	56765287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360405, intron 1 of 11)	intron (NM_001360405, intron 1 of 11)	436.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	59.36	63.64	65.03	69.98	52.77	95.33	38.86	62.92	96.18	101.43	109.04	77.06
Merged-chr15-59620124-3	chr15	59620048	59620248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28506.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	21.0	22.64	24.53	18.5	15.14	30.1	17.61	10.37	30.88	38.16	19.6	17.86
Merged-chr11-120824638-3	chr11	120824555	120824755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007988)	promoter-TSS (NM_007988)	-108.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	58.95	55.59	61.61	74.81	74.46	63.34	37.54	59.86	103.26	92.89	58.79	56.39
Merged-chr1-170998416-3	chr1	170998304	170998504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20522.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	120.33	115.2	173.42	149.62	153.0	137.03	130.88	197.1	181.94	149.13	228.13	114.03
Merged-chr2-6378945-3	chr2	6378853	6379053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	26217.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	41.59	52.32	88.42	93.71	52.77	43.9	48.83	82.04	56.84	41.17	78.39	40.41
Merged-chr11-11777004-3	chr11	11776917	11777117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31945.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	41.59	27.42	50.2	47.46	15.14	58.95	32.55	38.66	56.65	38.66	61.3	29.76
Merged-chr11-86586467-3	chr11	86586359	86586559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-2301.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	50.47	38.23	41.07	32.18	40.5	83.41	20.26	18.95	46.22	85.86	62.81	32.27
Merged-chr2-93435712-1	chr2	93435612	93435812	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13705.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	5.25	1.51	2.28	0.8	5.73	4.7	11.63	11.36	4.52	2.01	0.5	0.63
Merged-chr16-91538205-3	chr16	91538119	91538319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8875.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	16.96	16.85	28.52	37.4	26.18	25.09	34.55	42.03	68.84	56.24	79.89	59.21
Merged-chr1-172334881-3	chr1	172334805	172335005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5583.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	109.43	95.33	151.74	139.97	112.09	171.84	135.86	146.44	40.71	31.63	43.21	23.18
Merged-chr16-56029371-1	chr16	56029271	56029471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356449, intron 1 of 5)	CpG	346.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	20.59	36.72	31.38	28.56	28.64	29.48	37.2	28.15	47.6	41.17	34.67	29.45
Merged-chr19-11431384-3	chr19	11431291	11431491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12167.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	50.88	23.64	41.07	32.98	50.32	46.72	26.24	20.94	25.37	15.57	22.61	15.35
Merged-chr12-85123241-3	chr12	85123139	85123339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030225, intron 9 of 14)	intron (NM_030225, intron 9 of 14)	12406.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	33.52	25.15	44.5	42.23	41.73	39.51	39.53	56.94	24.59	23.1	46.23	19.11
Merged-chr10-98792538-3	chr10	98792434	98792634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122108.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	44.01	22.13	23.96	21.72	54.41	46.1	44.84	55.96	59.99	34.14	37.69	35.71
Merged-chr8-70611983-3	chr8	70611860	70612060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3646.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	58.55	64.64	79.86	71.99	64.64	54.56	77.73	70.04	93.43	92.39	111.55	63.28
Merged-chr7-16207282-1	chr7	16207182	16207382	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14711.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	4.44	2.52	6.28	0.0	2.05	1.88	3.99	8.41	29.5	30.13	28.64	24.43
Merged-chr10-61695487-3	chr10	61695408	61695608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-6.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	108.62	101.37	88.42	93.31	130.91	145.5	64.11	124.26	155.38	160.67	172.85	89.59
Merged-chr17-26973115-3	chr17	26973019	26973219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-60.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	170.0	138.59	131.78	162.49	160.78	164.63	98.32	149.02	191.57	165.69	200.49	100.56
Merged-chr8-121578892-3	chr8	121578814	121579014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133765)	promoter-TSS (NM_133765)	-108.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	83.59	99.35	93.55	85.67	93.28	116.02	80.39	48.95	141.62	148.12	163.81	99.93
Merged-chr1-165763741-3	chr1	165763641	165763841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-17.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	106.6	96.59	124.93	113.02	132.96	149.89	98.99	139.4	167.58	143.1	187.43	83.33
Merged-chr17-67353108-3	chr17	67353029	67353229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1330.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	29.88	39.74	42.78	20.91	29.46	33.87	47.5	49.57	63.14	47.2	47.23	31.64
Merged-chr14-26669743-5	chr14	26669652	26669852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	94.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	18.98	25.66	19.97	37.0	27.82	18.81	25.91	16.07	14.55	17.57	22.11	17.54
Merged-chr19-3935975-3	chr19	3935882	3936082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019449, intron 2 of 10)	intron (NM_019449, intron 2 of 10)	796.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	33.52	34.71	54.76	37.0	49.09	38.26	28.9	25.4	52.12	40.17	45.22	33.52
Merged-chr7-118742590-3	chr7	118742468	118742668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	2297.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	30.69	42.76	23.39	32.18	58.91	69.61	49.16	52.88	64.51	46.19	88.44	32.27
Merged-chr9-99109796-3	chr9	99109709	99109909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30402.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	44.42	39.99	72.45	63.95	76.09	54.25	60.12	89.24	72.38	41.17	77.88	36.03
Merged-chr17-32321310-3	chr17	32321211	32321411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131218)	promoter-TSS (NR_131218)	-73.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	119.12	118.47	135.2	144.79	175.51	142.05	132.2	138.67	157.94	190.3	198.98	94.92
Merged-chr11-52396664-5	chr11	52396587	52396787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153117, intron 1 of 2)	CpG	259.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	21.4	25.15	14.83	15.69	19.64	31.67	22.92	21.42	36.78	45.69	33.67	30.7
Merged-chr10-127650262-3	chr10	127650172	127650372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009284, intron 4 of 21)	MERVL_2A-int|LTR|ERVL	7286.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	17.77	12.07	23.96	31.37	22.09	15.68	13.62	21.81	25.77	25.11	45.73	22.24
Merged-chr5-138209686-2	chr5	138209586	138209786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	15372.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	18.98	14.34	31.38	22.12	27.0	22.26	31.56	41.97	0.0	0.0	2.01	0.0
Merged-chrX-48423874-3	chrX	48423777	48423977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 2 of 8)	intron (NM_019680, intron 2 of 8)	39255.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	31.9	20.88	41.64	33.78	38.05	53.31	56.47	55.88	47.4	58.75	60.8	42.6
Merged-chr11-69901006-3	chr11	69900936	69901136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-50.0	NM_027419	70419.0	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	51.28	51.06	52.48	51.88	60.14	50.49	31.89	40.57	61.76	89.37	61.81	44.8
Merged-chr14-103046927-3	chr14	103046818	103047018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008392)	promoter-TSS (NM_008392)	-94.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	47.24	80.24	54.76	28.96	42.96	86.23	23.25	24.39	140.63	139.59	108.03	67.35
Merged-chr17-5784155-3	chr17	5784050	5784250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14507.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	25.84	28.93	37.08	39.42	27.82	21.32	22.26	33.7	19.28	28.12	22.61	15.98
Merged-chr4-107178529-3	chr4	107178457	107178657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	-73.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	105.39	128.28	114.66	125.89	98.59	124.17	86.7	112.88	141.62	167.7	186.92	111.84
Merged-chr19-5786698-3	chr19	5786597	5786797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9284.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	41.99	34.96	47.35	36.6	38.86	53.93	43.18	45.76	48.58	56.74	50.75	32.27
Merged-chr15-5416222-3	chr15	5416116	5416316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80102.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	49.26	48.29	31.95	57.11	70.77	60.52	38.86	51.39	72.97	57.24	77.38	51.38
Merged-chr10-19117145-3	chr10	19117062	19117262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24587.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	27.46	30.18	20.54	19.71	39.68	31.98	20.93	27.48	45.24	21.09	46.23	19.74
Merged-chr6-115853494-3	chr6	115853412	115853612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031177)	promoter-TSS (NM_031177)	-16.0	NM_001167763	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	135.68	140.86	125.5	105.78	158.32	181.25	105.96	109.01	170.14	191.8	194.46	108.7
Merged-chr7-144939789-3	chr7	144939679	144939879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007631, exon 1 of 5)	5' UTR (NM_007631, exon 1 of 5)	146.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	25.84	27.92	34.23	23.33	25.36	38.88	17.27	22.12	43.47	37.66	49.75	21.3
Merged-chr2-71505061-2	chr2	71504962	71505162	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-24383.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	1.62	2.77	5.7	4.02	50.32	38.57	44.84	64.57	27.34	25.61	48.74	24.43
Merged-chr5-52190592-3	chr5	52190488	52190688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	-42.0	NM_001042620	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	94.08	103.13	140.33	116.64	119.05	134.84	81.71	136.18	153.81	121.01	231.14	102.75
Merged-chr8-82774141-3	chr8	82774027	82774227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145600)	promoter-TSS (NM_145600)	-1.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	55.72	29.93	60.47	61.54	57.68	54.88	50.82	70.07	47.01	45.19	65.83	39.16
Merged-chr3-82793825-3	chr3	82793724	82793924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	7SK|RNA|RNA	82659.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	26.65	38.23	45.64	70.79	57.68	46.1	62.78	86.22	60.97	56.74	86.93	47.3
Merged-chr8-11550731-3	chr8	11550618	11550818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024248)	promoter-TSS (NM_024248)	53.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	90.85	79.48	107.82	75.21	110.05	102.54	96.0	109.96	122.34	94.4	135.17	88.97
Merged-chr16-36071593-3	chr16	36071493	36071693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	-67.0	NM_198645	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	73.89	52.82	69.6	66.77	75.68	66.79	46.84	76.88	97.95	87.37	114.06	55.45
Merged-chr1-37998064-3	chr1	37997967	37998167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	57.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	24.63	30.18	23.96	19.71	36.82	35.43	26.57	33.42	46.42	31.63	57.79	28.19
Merged-chr18-53903792-3	chr18	53903648	53903848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	41635.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	89.24	73.45	104.39	78.03	85.09	136.09	65.44	93.51	105.62	116.99	143.21	57.01
Merged-chr7-25776928-3	chr7	25776844	25777044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 6 of 19)	intron (NM_009465, intron 6 of 19)	11789.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	155.06	82.25	172.28	155.25	126.41	123.86	113.93	157.15	126.86	130.05	162.8	110.9
Merged-chr15-58144725-1	chr15	58144625	58144825	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029734, intron 1 of 5)	LTR10_RN|LTR|ERVK	3359.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	7.67	6.04	2.28	4.02	39.27	28.85	18.93	51.79	3.54	3.01	4.52	1.88
Merged-chr7-27232972-3	chr7	27232878	27233078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-35.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	96.51	140.1	116.94	145.6	153.82	185.95	78.06	136.54	172.89	174.23	268.83	99.93
Merged-chr11-16508256-3	chr11	16508151	16508351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011343, exon 1 of 4)	5' UTR (NM_011343, exon 1 of 4)	233.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	107.01	83.76	99.26	119.45	131.73	137.03	94.0	138.22	160.69	119.0	192.45	90.53
Merged-chr19-21283195-1	chr19	21283095	21283295	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	10917.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	1.62	4.78	4.56	0.8	2.05	10.98	2.33	0.76	2.16	4.02	0.0	2.82
Merged-chr15-78589080-3	chr15	78588982	78589182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7493.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	149.4	144.13	164.29	157.26	176.73	163.37	193.99	167.44	158.92	160.67	213.05	99.31
Merged-chr1-152599525-3	chr1	152599439	152599639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	25678.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	38.76	31.69	92.98	76.82	88.78	92.82	102.97	106.09	44.65	52.72	67.84	34.15
Merged-chr8-25156347-3	chr8	25156220	25156420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177089, exon 13 of 13)	3' UTR (NM_177089, exon 13 of 13)	2913.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	37.15	34.21	49.63	37.81	48.68	71.81	52.15	63.84	47.8	65.78	66.33	38.85
Merged-chr3-96057935-3	chr3	96057848	96058048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013841, exon 1 of 15)	5' UTR (NM_013841, exon 1 of 15)	507.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	17.77	20.88	22.82	23.73	27.41	32.3	21.59	29.44	27.93	33.64	37.18	27.88
Merged-chr17-67345395-3	chr17	67345331	67345531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MTD|LTR|ERVL-MaLR	9028.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	112.66	97.84	91.27	110.2	132.14	130.76	138.52	153.22	173.09	160.17	192.95	68.92
Merged-chr14-61360369-3	chr14	61360260	61360460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026598)	promoter-TSS (NM_026598)	85.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	48.05	58.35	77.58	113.82	78.55	58.01	64.77	85.29	65.5	60.25	99.99	69.55
Merged-chr12-24593369-3	chr12	24593259	24593459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	12640.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	71.07	71.18	63.32	79.64	85.09	122.92	65.11	105.79	96.18	115.99	123.61	57.01
Merged-chr13-54694128-3	chr13	54694033	54694233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027395)	promoter-TSS (NR_027395)	-173.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	216.43	253.54	255.56	224.03	281.87	320.16	231.86	229.18	346.96	401.18	479.37	204.56
Merged-chr13-8870633-3	chr13	8870535	8870735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	409.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	27.05	9.81	26.24	22.12	23.73	15.68	16.28	24.62	19.47	25.61	28.14	20.36
Merged-chr18-65507047-1	chr18	65506947	65507147	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-73183.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.46	5.03	2.85	8.04	6.55	4.08	8.97	11.97	8.85	5.02	6.53	4.39
Merged-chr11-94521467-3	chr11	94521365	94521565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170671)	promoter-TSS (NM_170671)	37.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	41.19	34.46	58.76	31.37	15.96	29.79	18.93	17.5	25.57	19.58	28.14	20.05
Merged-chr7-19266142-3	chr7	19266036	19266236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	5718.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	150.62	144.88	180.83	135.14	170.19	224.83	140.84	112.74	222.26	254.07	191.45	107.76
Merged-chr18-75367304-3	chr18	75367196	75367396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-69.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	59.76	63.64	81.0	69.58	86.73	67.1	55.14	63.25	122.93	119.0	133.16	77.06
Merged-chr1-140175674-3	chr1	140175585	140175785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	7726.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	28.67	20.37	22.25	29.36	37.23	22.89	27.9	45.9	34.42	44.19	68.84	24.75
Merged-chr5-45493339-3	chr5	45493209	45493409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-65.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	236.62	183.87	209.36	232.47	270.83	277.51	188.67	246.34	305.46	262.1	423.09	170.1
Merged-chr3-95523954-3	chr3	95523891	95524091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2795.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	43.21	30.69	70.17	47.86	47.87	62.71	51.15	62.58	50.35	47.7	62.31	46.36
Merged-chr17-46874273-3	chr17	46874162	46874362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16359.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	40.38	29.93	29.09	18.5	41.32	47.35	23.25	34.68	52.12	55.73	49.24	28.51
Merged-chr15-74989482-3	chr15	74989391	74989591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6061.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	29.07	29.68	33.09	26.14	29.86	21.64	21.92	15.87	40.52	35.15	31.66	26.0
Merged-chr4-6335794-3	chr4	6335699	6335899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-29881.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	92.47	93.32	92.98	111.81	108.0	114.77	85.04	138.45	170.14	140.09	164.81	111.52
Merged-chr9-88731910-3	chr9	88731802	88732002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007536)	promoter-TSS (NM_007536)	-52.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	65.41	52.57	65.6	69.18	43.77	73.38	33.55	33.25	60.78	62.26	57.28	38.22
Merged-chr9-116084834-3	chr9	116084734	116084934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	90529.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	37.96	37.23	51.34	49.47	59.73	42.33	58.46	59.83	42.29	42.18	43.72	26.31
Merged-chr10-44271873-3	chr10	44271772	44271972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358596, intron 1 of 6)	L2|LINE|L2	3533.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	54.92	51.31	55.33	50.27	61.37	84.35	55.47	52.93	91.46	51.72	66.83	36.65
Merged-chr2-27715422-3	chr2	27715315	27715515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4832.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	19.79	16.35	30.8	30.97	45.41	25.09	36.21	48.25	26.75	26.61	34.67	17.86
Merged-chr4-10952569-3	chr4	10952482	10952682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	55037.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	56.13	61.88	74.73	29.36	75.68	72.75	31.22	57.5	68.84	72.81	66.83	38.53
Merged-chr16-11433975-3	chr16	11433878	11434078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28330.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	49.26	27.17	74.16	43.84	60.96	48.92	58.46	78.39	48.19	45.69	100.5	36.65
Merged-chr10-121374816-3	chr10	121374711	121374911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	9721.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	100.95	76.21	109.53	94.52	119.05	121.04	110.95	126.56	157.55	123.02	157.28	76.44
Merged-chr17-35979611-3	chr17	35979518	35979718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	-151.0	NM_001165892	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	60.57	73.7	47.92	61.13	93.28	107.56	49.16	51.7	89.1	105.44	86.43	55.76
Merged-chr5-17880066-3	chr5	17879969	17880169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	8890.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	132.44	113.69	128.92	120.66	179.6	235.81	209.27	170.94	179.58	213.9	178.88	103.69
Merged-chr12-95745250-3	chr12	95745165	95745365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53039.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	39.98	42.26	42.78	56.71	47.05	47.35	47.5	54.95	76.51	59.25	101.5	43.54
Merged-chr9-101073830-3	chr9	101073748	101073948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-914.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	166.36	148.9	162.58	143.99	146.87	202.88	159.44	143.27	229.54	203.35	269.33	111.52
Merged-chr7-78913899-3	chr7	78913774	78913974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	109.0	NM_020583	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	24.63	43.01	42.78	44.64	41.73	74.94	52.48	51.11	55.47	55.73	71.35	34.46
Merged-chr12-113156238-3	chr12	113156152	113156352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-169.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	323.44	266.12	313.18	302.05	289.24	377.86	294.97	321.28	345.19	373.06	512.03	213.33
Merged-chr13-9882497-3	chr13	9882385	9882585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117164.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	29.48	19.62	23.39	20.51	33.96	44.84	25.58	42.67	51.73	36.15	57.28	30.7
Merged-chr7-143021954-3	chr7	143021855	143022055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16296.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	60.97	32.7	41.64	41.43	39.68	65.54	40.86	50.05	71.0	49.21	110.04	45.11
Merged-chr18-44757907-3	chr18	44757814	44758014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 2 of 18)	MTD|LTR|ERVL-MaLR	54268.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	52.9	51.56	65.6	89.29	62.59	51.74	40.86	102.08	58.61	62.26	66.33	42.92
Merged-chr9-25504294-3	chr9	25504205	25504405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22708.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	37.55	47.79	103.82	44.24	70.37	97.21	98.65	99.51	100.7	97.91	97.48	74.56
Merged-chr7-97371656-3	chr7	97371562	97371762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199035)	promoter-TSS (NM_199035)	45.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	54.92	40.24	52.48	34.19	49.09	60.83	43.18	43.93	51.53	54.73	57.28	27.25
Merged-chr18-78142847-3	chr18	78142756	78142956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-737.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	99.33	67.66	107.25	119.05	107.59	93.13	124.23	145.04	122.34	93.39	174.86	72.99
Merged-chr2-113820272-3	chr2	113820199	113820399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	8792.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	95.7	95.58	106.68	157.26	101.05	85.92	117.59	151.49	122.73	83.35	145.22	120.29
Merged-chr7-25133276-3	chr7	25133207	25133407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-847.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	18.57	26.41	22.82	22.93	20.46	30.1	14.95	24.36	37.96	29.62	33.67	24.12
Merged-chr17-44101065-3	chr17	44100965	44101165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357997, intron 3 of 3)	intron (NM_001357997, intron 3 of 3)	4743.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	83.99	86.53	43.35	43.04	56.05	82.47	24.25	33.17	132.37	109.96	97.48	39.78
Merged-chr7-4724544-3	chr7	4724438	4724638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142792, intron 1 of 5)	intron (NM_001142792, intron 1 of 5)	544.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	68.24	65.15	73.02	94.11	59.32	70.55	75.07	84.65	72.38	63.27	90.45	58.58
Merged-chr7-110060960-1	chr7	110060860	110061060	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-742.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	8.08	14.84	16.54	18.1	9.41	12.23	15.94	11.13	15.34	14.56	20.6	13.78
Merged-chr11-33163186-3	chr11	33163077	33163277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252261)	promoter-TSS (NM_001252261)	29.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	131.64	154.44	132.92	123.07	154.23	177.17	117.59	101.89	118.41	115.99	175.87	74.56
Merged-chr5-143548689-3	chr5	143548585	143548785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026050)	promoter-TSS (NM_026050)	-21.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	105.39	73.19	92.98	65.16	89.59	84.98	65.44	60.25	118.21	110.97	87.43	52.0
Merged-chr9-122950929-3	chr9	122950830	122951030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	70.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	50.47	50.56	35.37	35.8	47.05	38.88	40.52	34.01	69.82	55.23	41.71	30.7
Merged-chr19-44264392-3	chr19	44264283	44264483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29293.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	46.03	36.47	58.76	56.31	50.32	63.34	39.2	45.28	43.07	21.09	46.73	28.82
Merged-chr2-92375353-3	chr2	92375260	92375460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	121.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	174.44	204.49	225.9	209.95	202.92	266.54	203.29	229.82	228.75	233.48	297.97	144.1
Merged-chr19-19144649-1	chr19	19144549	19144749	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-33453.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	3.23	1.01	3.42	4.42	2.05	5.96	9.63	7.88	3.74	6.53	12.56	2.51
Merged-chr16-22439793-3	chr16	22439692	22439892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-222.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	284.68	257.06	290.36	321.36	252.83	319.84	221.23	245.38	342.83	321.35	409.02	216.47
Merged-chr12-54986381-3	chr12	54986295	54986495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013815)	promoter-TSS (NM_013815)	-59.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	73.89	71.94	51.34	58.32	83.46	115.08	53.81	73.4	113.49	97.41	90.95	57.33
Merged-chr1-153489300-3	chr1	153489191	153489391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1631.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	81.16	68.42	78.72	89.69	61.37	86.23	55.8	104.08	85.76	84.35	98.99	59.52
Merged-chr13-95957397-3	chr13	95957319	95957519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65497.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	85.6	83.26	120.94	145.19	146.05	123.86	129.88	138.81	153.22	114.48	195.97	109.64
Merged-chr2-14073936-3	chr2	14073807	14074007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	27.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	48.05	51.31	41.64	54.7	36.0	58.95	55.8	40.07	32.85	56.74	52.76	36.34
Merged-chr14-25471348-3	chr14	25471271	25471471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	12186.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	33.11	26.41	34.8	20.11	36.41	45.47	21.59	41.3	43.27	35.15	45.73	26.94
Merged-chr14-33216560-3	chr14	33216508	33216708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-215.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	12.11	13.58	9.7	22.52	20.46	26.65	25.58	29.83	24.78	17.07	15.58	15.66
Merged-chr9-105459152-3	chr9	105459025	105459225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359823, intron 7 of 26)	MER47B|DNA|TcMar-Tigger	36008.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	44.42	44.27	90.7	76.02	85.91	94.39	61.45	98.75	144.96	120.0	227.12	126.25
Merged-chr8-10924648-3	chr8	10924543	10924743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3814.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	55.32	49.3	68.45	74.81	75.68	58.32	56.47	81.0	80.05	71.3	88.94	47.93
Merged-chr5-72168182-3	chr5	72168041	72168241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356611)	promoter-TSS (NM_001356611)	48.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	44.82	43.01	25.1	29.76	59.32	56.44	43.51	37.99	54.48	52.72	41.2	20.99
Merged-chr12-65075552-3	chr12	65075452	65075652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178912)	promoter-TSS (NM_178912)	-54.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	95.7	93.82	91.27	88.08	99.82	134.21	82.71	136.96	157.74	125.53	137.68	79.57
Merged-chr4-139176033-3	chr4	139175939	139176139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033543, exon 3 of 3)	non-coding (NR_033543, exon 3 of 3)	4616.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	64.61	38.48	50.2	47.06	72.0	53.93	37.2	58.96	56.65	56.74	58.29	50.12
Merged-chr12-98292483-3	chr12	98292390	98292590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23855.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	16.15	11.32	34.8	32.98	26.18	21.32	38.53	41.83	31.67	22.59	58.79	24.75
Merged-chr9-92303564-2	chr9	92303465	92303665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5812.0	NM_001033184	78459.0	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	25.44	19.12	30.8	26.14	20.86	22.89	28.23	26.75	0.0	0.0	0.0	0.63
Merged-chr1-127774644-1	chr1	127774544	127774744	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	480.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	22.21	21.13	17.11	33.78	27.0	14.74	17.61	19.43	27.54	18.08	43.72	33.21
Merged-chr12-41275032-1	chr12	41274932	41275132	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	211025.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.63	0.5	1.14	7.24	3.68	5.02	10.96	14.83	2.95	2.01	6.53	4.07
Merged-chr4-140983551-3	chr4	140983449	140983649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3324.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	175.25	139.35	151.74	176.16	183.69	161.8	126.22	185.58	170.53	155.65	256.77	109.02
Merged-chr12-51832612-1	chr12	51832512	51832712	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3076.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	7.27	2.26	1.71	8.45	12.27	5.33	2.66	17.05	5.51	3.01	5.53	3.76
Merged-chr11-98361445-3	chr11	98361347	98361547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3079.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	35.94	38.99	45.07	46.25	60.14	40.45	33.22	63.0	47.01	37.66	41.71	23.18
Merged-chr2-11333456-3	chr2	11333352	11333552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6037.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	38.36	27.17	71.88	32.18	46.23	31.67	39.2	63.84	58.42	44.19	51.25	30.7
Merged-chrX-94123207-3	chrX	94123088	94123288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011768, exon 1 of 8)	5' UTR (NM_011768, exon 1 of 8)	219.0	NM_011768	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	33.52	33.7	33.09	24.13	31.91	40.45	32.88	26.05	41.3	37.66	52.26	26.0
Merged-chr12-84275491-3	chr12	84275390	84275590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-9806.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	68.24	65.9	62.75	67.97	97.78	90.31	55.14	83.19	94.8	59.25	97.48	65.47
Merged-chr19-55743624-3	chr19	55743513	55743713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	1803.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	38.76	21.63	37.65	16.49	38.46	47.35	36.87	26.64	54.48	61.26	44.22	23.81
Merged-chr4-45520616-3	chr4	45520522	45520722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	10206.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	34.32	31.19	38.79	31.77	44.18	35.43	26.91	34.74	38.94	47.2	33.67	28.51
Merged-chr3-79586979-3	chr3	79586871	79587071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4366.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	41.19	36.72	31.95	36.6	37.23	55.19	26.24	52.79	50.94	36.65	56.28	41.66
Merged-chr10-122678784-3	chr10	122678689	122678889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	27.0	NM_001110218	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	56.53	68.42	55.33	80.04	55.64	74.63	90.02	73.01	74.54	75.82	93.96	58.58
Merged-chr9-113928785-3	chr9	113928688	113928888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2146.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	57.34	51.31	53.05	70.38	78.14	86.55	57.13	75.65	67.07	56.24	110.55	48.56
Merged-chr17-53689391-3	chr17	53689295	53689495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-80.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	148.6	150.67	180.26	178.98	193.1	206.33	137.19	212.1	230.32	256.07	283.4	142.85
Merged-chr18-54668715-2	chr18	54668617	54668817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56973.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	15.34	12.07	26.81	22.93	56.87	59.58	62.12	65.19	0.0	0.0	0.0	0.63
Merged-chr17-79016002-1	chr17	79015902	79016102	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171004, intron 1 of 18)	intron (NM_001171004, intron 1 of 18)	4814.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	2.42	3.02	0.57	6.44	4.09	3.45	9.63	10.15	5.9	6.53	8.04	9.4
Merged-chr11-97142499-3	chr11	97142379	97142579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198100, intron 6 of 8)	MER94|DNA|hAT-Blackjack	3940.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	41.59	37.98	47.35	30.57	38.05	48.6	21.92	24.0	40.52	37.16	29.14	37.28
Merged-chrX-102157179-3	chrX	102157063	102157263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146235)	promoter-TSS (NM_146235)	-72.0	NM_146235	236930.0	Mm.31911	NM_146235	ENSMUSG00000051220	Ercc6l	BC004701|D330021P09Rik	excision repair cross-complementing rodent repair deficiency complementation group 6 like	protein-coding	118.72	104.38	120.37	126.69	134.6	156.47	96.99	157.65	157.15	149.13	184.41	102.75
Merged-chr1-176818906-3	chr1	176818812	176819012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4252.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	20.19	28.93	27.38	28.56	30.68	37.32	23.58	24.2	33.44	30.63	40.2	21.62
Merged-chr1-134405756-4	chr1	134405677	134405877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355133)	promoter-TSS (NM_001355133)	-4.0	NM_028057	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	25.84	31.69	43.35	41.43	39.27	33.55	26.57	27.79	29.11	37.16	46.73	47.93
Merged-chr5-125475812-3	chr5	125475745	125475945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-28.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	39.57	37.73	33.09	31.77	47.05	47.98	20.93	32.94	71.2	55.73	59.8	30.07
Merged-chr10-57760910-3	chr10	57760793	57760993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-24030.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	26.65	32.45	26.24	36.6	42.14	51.74	38.86	60.25	36.98	36.15	41.2	21.93
Merged-chr7-30394624-3	chr7	30394596	30394796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19092.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	89.64	74.2	82.72	84.46	87.96	90.31	55.14	77.8	65.1	75.82	76.88	55.13
Merged-chr11-54438078-3	chr11	54437971	54438171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-108.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	107.01	84.26	95.84	87.68	101.87	100.34	63.11	61.49	125.29	130.55	118.59	90.22
Merged-chr18-36727764-3	chr18	36727626	36727826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009841)	promoter-TSS (NM_009841)	-911.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	26.25	23.64	23.96	45.05	30.27	29.16	40.19	31.23	36.58	44.69	55.27	33.21
Merged-chr1-65179217-3	chr1	65179126	65179326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-84.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	108.62	95.58	99.26	143.99	121.5	124.17	104.63	119.38	133.94	131.55	183.91	85.84
Merged-chr2-60298433-3	chr2	60298343	60298543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013825, intron 34 of 34)	ORR1D2|LTR|ERVL-MaLR	-13959.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	29.88	28.67	33.09	37.4	35.59	40.45	32.55	33.53	48.58	55.23	70.85	48.24
Merged-chr8-22593891-3	chr8	22593806	22594006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-93.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	161.52	134.57	134.63	129.11	144.82	234.24	120.25	163.49	240.16	253.06	310.53	116.54
Merged-chr7-145110841-3	chr7	145110764	145110964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97255.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	111.45	98.35	116.37	97.33	115.37	129.19	83.04	111.98	137.09	138.58	161.3	65.79
Merged-chr14-29968327-3	chr14	29968238	29968438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-42.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	165.96	153.68	170.0	139.97	162.41	203.2	119.58	146.69	219.7	215.4	226.12	157.26
Merged-chr2-71274416-3	chr2	71274340	71274540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	62494.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	46.84	59.86	50.77	39.42	83.05	107.87	66.77	90.0	110.15	102.93	68.34	59.52
Merged-chr19-10688732-3	chr19	10688619	10688819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	-16.0	NM_181403	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	74.7	77.72	54.76	53.09	68.73	141.73	53.15	37.82	74.74	99.42	98.49	38.53
Merged-chr19-32388562-3	chr19	32388461	32388661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-49.0	NM_144792	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	85.2	97.84	109.53	87.68	94.91	115.39	73.41	88.63	128.63	96.91	144.21	76.75
Merged-chr2-118111232-3	chr2	118111133	118111333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-31.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	17.36	21.63	18.83	21.32	24.96	27.28	11.96	21.62	26.55	20.08	21.61	28.51
Merged-chr14-33247886-3	chr14	33247791	33247991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31068.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	87.62	82.5	140.33	123.48	135.82	137.97	94.34	136.43	127.85	110.97	139.19	81.76
Merged-chr9-7868208-3	chr9	7868113	7868313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4957.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	51.28	42.01	51.91	61.54	109.64	50.17	48.16	72.11	80.84	72.3	103.01	47.3
Merged-chr6-125333659-3	chr6	125333575	125333775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	12335.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	85.2	71.43	87.85	92.91	99.0	103.48	70.75	105.93	107.59	99.42	155.27	85.52
Merged-chr14-103719428-3	chr14	103719323	103719523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19991.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	30.28	23.14	24.53	42.23	60.55	35.43	38.86	46.57	33.83	29.62	54.77	39.16
Merged-chr14-56575567-3	chr14	56575465	56575665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145978)	promoter-TSS (NM_001145978)	-54.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	72.68	52.57	45.64	60.33	84.68	93.76	49.83	72.98	84.18	66.28	93.96	53.26
Merged-chr4-123750364-3	chr4	123750263	123750463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-64.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	151.83	136.08	150.6	140.37	160.37	164.94	79.72	110.72	147.12	166.7	162.3	122.8
Merged-chr2-120404680-3	chr2	120404578	120404778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-562.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	39.57	26.41	54.19	42.63	41.73	55.82	33.88	42.7	70.41	66.28	72.36	37.28
Merged-chr5-31614043-3	chr5	31613955	31614155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025796, intron 1 of 3)	CpG	104.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	15.34	32.2	26.81	29.36	32.32	38.26	29.23	21.53	26.75	23.1	40.7	21.93
Merged-chr8-104340728-3	chr8	104340629	104340829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024217, exon 1 of 5)	5' UTR (NM_024217, exon 1 of 5)	135.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	78.34	79.99	84.43	86.47	78.14	77.14	79.72	86.19	111.92	79.83	146.22	57.33
Merged-chr18-39241163-3	chr18	39241056	39241256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246089.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	63.4	46.78	85.57	66.77	66.68	39.82	61.45	70.65	68.25	70.8	96.48	55.76
Merged-chr14-101595817-3	chr14	101595703	101595903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	13388.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	21.4	26.16	26.81	41.02	36.0	22.58	17.61	46.18	32.85	20.59	44.22	25.37
Merged-chr17-65630760-3	chr17	65630643	65630843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	9013.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	31.09	17.1	25.1	23.73	33.14	23.2	17.61	33.11	49.57	38.16	58.79	19.74
Merged-chr17-57279136-3	chr17	57279066	57279266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011691)	promoter-TSS (NM_011691)	66.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	41.59	42.01	39.93	37.4	47.87	34.18	47.83	37.18	63.33	40.17	61.81	27.57
Merged-chr4-99163724-3	chr4	99163627	99163827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30207.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	58.15	69.42	86.71	39.01	82.64	118.22	61.12	66.5	94.8	98.41	119.59	52.94
Merged-chrX-7883958-3	chrX	7883860	7884060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_078484)	promoter-TSS (NM_078484)	-284.0	NM_001083937	22232.0	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	84.39	83.76	100.4	94.52	90.41	99.4	74.74	83.02	102.87	95.9	115.57	54.51
Merged-chr5-125340853-6	chr5	125340752	125340952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001205082, exon 1 of 12)	exon (NM_001205082, exon 1 of 12)	242.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	14.94	32.7	27.38	26.14	22.09	30.42	20.93	18.11	26.75	38.16	29.14	28.82
Merged-chr8-84903208-3	chr8	84903110	84903310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010635, exon 2 of 3)	exon (NM_010635, exon 2 of 3)	1282.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	52.09	59.36	46.21	47.86	74.87	60.21	28.57	54.98	56.84	72.81	67.84	34.77
Merged-chr11-98342768-3	chr11	98342668	98342868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5638.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	43.61	43.77	41.07	46.25	53.59	52.99	14.28	30.31	45.43	46.7	42.21	32.89
Merged-chr11-75533142-3	chr11	75533037	75533237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1025.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	27.05	22.13	32.52	21.72	37.64	32.3	30.56	43.32	39.14	43.68	51.76	31.33
Merged-chr2-132578210-3	chr2	132578115	132578315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	33.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	159.9	159.97	161.44	145.6	146.87	193.47	126.89	150.65	191.57	230.47	239.68	143.79
Merged-chr6-3487568-3	chr6	3487456	3487656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6942.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	52.09	46.78	63.89	51.08	54.41	57.38	57.8	68.8	78.87	64.27	55.27	42.92
Merged-chr7-28809149-3	chr7	28809062	28809262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1728.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	73.09	52.57	65.6	47.06	43.36	56.13	54.14	52.04	86.15	92.89	115.07	46.68
Merged-chr7-99625931-3	chr7	99625825	99626025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195529, exon 1 of 1)	exon (NM_001195529, exon 1 of 1)	1178.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	20.19	10.82	17.68	22.93	18.82	15.68	12.62	13.88	19.08	23.1	28.14	14.1
Merged-chr14-74937077-3	chr14	74936965	74937165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	MER44D|DNA|TcMar-Tigger	10812.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	75.51	82.25	78.15	70.79	44.18	37.0	26.57	42.11	50.75	44.69	44.22	19.42
Merged-chr19-40637876-3	chr19	40637756	40637956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	102.16	59.61	105.53	96.13	116.19	111.32	87.03	129.9	67.27	59.75	110.04	62.97
Merged-chr14-10439553-3	chr14	10439458	10439658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	13900.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	27.05	34.96	31.38	33.78	41.73	27.59	44.18	53.27	45.43	32.13	43.21	21.93
Merged-chr8-120441936-1	chr8	120441836	120442036	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46930.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	8.48	3.77	1.14	4.02	2.86	2.82	6.31	10.21	5.7	5.02	13.06	7.83
Merged-chr1-191351266-3	chr1	191351172	191351372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144880)	TTS (NM_144880)	25307.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	19.79	26.91	37.08	37.4	28.23	34.81	35.87	30.08	41.3	41.17	35.17	17.86
Merged-chr5-135909685-3	chr5	135909587	135909787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21768.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	67.03	42.26	63.32	55.5	69.55	58.64	79.72	77.86	60.19	63.77	90.45	66.41
Merged-chr8-121877457-1	chr8	121877357	121877557	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30229.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.0	0.25	2.28	1.21	0.0	0.31	0.0	1.68	33.04	15.57	44.72	26.31
Merged-chr1-118311347-3	chr1	118311255	118311455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	-9.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	58.95	52.82	63.32	59.93	58.91	70.24	58.79	75.42	81.04	63.77	95.47	52.32
Merged-chr8-72492776-3	chr8	72492667	72492867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-153.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	327.88	256.06	298.35	300.44	323.19	382.87	251.79	334.57	306.24	370.55	353.75	211.77
Merged-chr9-71951424-3	chr9	71951323	71951523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-55327.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	45.63	41.25	71.88	54.7	73.64	73.38	66.43	83.52	95.79	73.81	87.43	60.46
Merged-chr18-34931476-1	chr18	34931376	34931576	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	CpG	527.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	10.09	20.12	19.97	10.05	12.27	31.67	22.59	12.03	23.8	31.63	16.58	22.24
Merged-chr4-136140483-3	chr4	136140410	136140610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	114.68	80.49	91.27	107.79	97.37	119.78	81.05	99.17	153.61	126.03	213.56	83.02
Merged-chr5-41845222-3	chr5	41845067	41845267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-852.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	9.29	14.84	2.28	22.12	11.05	19.44	23.92	17.75	15.74	17.07	21.61	16.6
Merged-chr10-94521924-3	chr10	94521817	94522017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	7060.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	51.69	44.27	37.65	31.37	66.68	59.89	30.89	53.5	49.76	48.2	44.22	16.92
Merged-chr7-3941129-3	chr7	3941045	3941245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25644.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	33.52	33.45	48.49	55.1	40.5	49.54	36.21	40.99	31.47	29.12	28.64	17.23
Merged-chr17-10725071-3	chr17	10724973	10725173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115118.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	29.07	29.18	44.5	53.89	92.05	65.85	67.1	103.91	49.37	39.67	83.91	36.34
Merged-chr3-59228910-3	chr3	59228813	59229013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-18031.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	86.82	89.04	95.84	96.93	76.5	94.07	98.99	80.08	72.58	52.72	64.32	40.41
Merged-chr8-79415080-3	chr8	79414978	79415178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15610.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	56.53	59.61	110.1	115.43	90.41	48.6	81.38	140.58	73.56	44.19	76.88	50.75
Merged-chr13-23369226-3	chr13	23369100	23369300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172586)	promoter-TSS (NM_172586)	8.0	NM_001286156	218100.0	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	73.89	73.45	85.0	112.21	97.37	100.97	103.64	110.1	105.62	94.4	160.79	71.74
Merged-chr2-170221156-3	chr2	170221056	170221256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78481.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	21.4	15.59	25.1	21.32	18.41	13.48	16.28	22.85	30.88	29.12	43.72	19.74
Merged-chr2-101777000-1	chr2	101776900	101777100	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	MIRb|SINE|MIR	20707.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.4	1.01	0.0	6.44	0.0	1.88	0.0	1.07	20.65	23.1	28.64	14.72
Merged-chr8-45333247-3	chr8	45333140	45333340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-44.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	90.05	98.85	62.75	63.55	108.0	148.63	57.13	68.69	108.97	131.55	107.53	45.11
Merged-chr14-55540284-3	chr14	55540179	55540379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	13.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	97.72	59.61	98.69	97.73	97.78	108.5	77.73	114.28	91.07	97.41	141.2	71.11
Merged-chr4-139430368-3	chr4	139430292	139430492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160319, intron 48 of 105)	intron (NM_001160319, intron 48 of 105)	49733.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	30.69	26.41	29.66	41.02	37.23	42.33	24.91	31.26	50.94	66.78	79.89	25.37
Merged-chr10-78144324-3	chr10	78144235	78144435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25433.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	23.02	26.16	30.8	17.7	25.36	20.07	29.23	31.4	27.73	21.59	35.68	21.3
Merged-chr11-83572426-3	chr11	83572330	83572530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011338)	TTS (NM_011338)	6206.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	52.49	49.3	76.44	55.1	55.23	54.25	76.4	58.04	52.91	59.75	60.3	31.64
Merged-chr1-97673046-3	chr1	97672939	97673139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11021.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	26.65	20.37	44.5	28.15	49.5	40.76	35.21	55.26	47.21	47.2	61.81	24.12
Merged-chr9-3403811-4	chr9	3403735	3403935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-250.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	36.34	44.27	28.52	44.64	54.82	57.7	59.79	54.79	60.78	72.3	64.82	49.18
Merged-chr10-58323406-3	chr10	58323304	58323504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359115)	promoter-TSS (NM_001359115)	-143.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	295.17	308.88	340.56	326.99	323.19	413.29	333.17	353.36	399.67	406.71	500.98	255.0
Merged-chr1-119504320-3	chr1	119504235	119504435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	447.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	33.11	21.38	38.79	43.04	53.59	40.14	40.52	56.94	62.15	44.19	75.37	43.23
Merged-chr8-126833658-3	chr8	126833529	126833729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15391.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	20.19	6.29	36.51	21.32	29.46	23.83	38.53	37.91	23.21	28.12	30.65	14.41
Merged-chr15-91192046-3	chr15	91191918	91192118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358967)	promoter-TSS (NM_001358967)	-11.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	33.92	38.74	28.52	44.24	60.14	37.0	30.89	46.99	35.01	45.69	53.77	24.75
Merged-chr16-95839698-3	chr16	95839584	95839784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	59029.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	27.05	22.64	50.2	44.64	43.36	38.57	46.17	53.89	44.06	45.19	70.85	26.31
Merged-chr4-107285641-3	chr4	107285542	107285742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21526.0	NM_007860	13370.0	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	131.23	104.38	106.68	137.95	123.55	131.07	86.03	127.09	123.13	158.16	151.75	82.7
Merged-chr10-95279668-3	chr10	95279558	95279758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	44051.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	62.18	65.65	87.28	88.48	48.27	85.29	52.82	64.71	51.73	56.74	60.3	49.18
Merged-chr1-136346091-3	chr1	136345980	136346180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	24.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	38.76	40.24	61.04	38.21	61.37	39.82	48.5	51.08	42.88	31.13	50.25	29.45
Merged-chr19-44474320-3	chr19	44474219	44474419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19153.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	31.09	26.41	29.66	28.15	33.55	41.39	13.62	24.64	35.6	36.65	54.77	26.63
Merged-chr8-46617271-3	chr8	46617154	46617354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009810)	promoter-TSS (NM_009810)	-27.0	NR_151680	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	73.49	78.98	95.27	81.65	100.64	114.77	88.03	88.99	127.26	105.94	170.34	82.39
Merged-chr15-40956063-3	chr15	40955957	40956157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-217644.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	34.32	34.71	53.05	38.21	63.82	56.44	42.19	82.43	63.33	60.75	77.88	42.6
Merged-chrX-9462916-3	chrX	9462804	9463004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 3 of 12)	intron (NM_007807, intron 3 of 12)	6420.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	42.8	44.52	41.07	52.69	72.41	74.0	46.5	54.25	78.09	49.71	84.42	43.54
Merged-chr16-36041158-3	chr16	36041058	36041258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027113)	promoter-TSS (NM_027113)	-32.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	136.48	102.12	134.06	106.18	124.37	144.87	78.06	123.62	144.57	127.03	138.18	71.42
Merged-chr3-36613427-3	chr3	36613308	36613508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027810)	promoter-TSS (NM_027810)	-19.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	69.86	72.94	106.68	86.07	127.23	136.09	100.32	147.84	110.93	102.93	171.85	61.71
Merged-chr5-110839866-3	chr5	110839757	110839957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016681)	promoter-TSS (NM_016681)	-80.0	NR_153348	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	168.38	156.45	139.19	124.68	164.46	231.42	123.24	146.58	250.78	213.39	267.32	122.17
Merged-chr4-66852192-3	chr4	66852094	66852294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24643.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	27.05	12.58	38.22	30.97	98.59	78.71	76.4	62.52	33.24	41.67	28.14	17.54
Merged-chr12-26398738-1	chr12	26398638	26398838	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	16272.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	8.48	5.03	5.13	6.84	33.96	20.07	32.55	30.39	1.77	0.0	4.02	3.76
Merged-chr8-124897876-3	chr8	124897777	124897977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-9.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	65.01	69.67	79.86	65.96	71.59	71.18	55.14	60.17	83.0	75.32	66.83	46.68
Merged-chr4-133967325-3	chr4	133967232	133967432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016957, intron 1 of 5)	CpG	659.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	82.37	78.73	85.0	74.0	70.37	113.51	44.18	50.52	107.0	127.03	83.41	68.29
Merged-chr7-19077942-3	chr7	19077852	19078052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1752.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	31.09	24.65	31.38	42.23	39.27	49.23	40.86	53.1	66.68	65.78	102.0	35.71
Merged-chr5-112276528-3	chr5	112276439	112276639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326590)	promoter-TSS (NM_001326590)	-152.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	216.03	215.31	177.98	189.44	198.42	278.14	200.63	159.93	310.96	348.96	410.53	186.39
Merged-chr12-80946164-3	chr12	80946077	80946277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045057)	promoter-TSS (NR_045057)	678.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	176.05	190.41	147.18	156.05	211.92	290.37	165.42	183.81	269.66	236.49	294.96	158.2
Merged-chr13-55190411-3	chr13	55190311	55190511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19371.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	67.43	51.06	69.03	64.75	91.23	100.03	39.2	69.84	128.63	117.49	108.03	77.06
Merged-chr3-100436859-3	chr3	100436762	100436962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	10457.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	72.68	73.19	91.27	55.91	70.37	88.43	47.5	56.97	144.57	151.64	119.09	69.23
Merged-chr2-165875015-3	chr2	165874906	165875106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3431.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	21.4	20.88	27.38	21.72	31.91	38.26	14.62	33.73	28.13	29.62	30.15	15.04
Merged-chr1-75192707-3	chr1	75192577	75192777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001288612)	promoter-TSS (NM_001288612)	517.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	20.19	30.69	31.38	7.24	39.27	90.94	34.55	22.32	78.09	93.89	87.93	26.31
Merged-chr12-81595102-3	chr12	81594998	81595198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347386)	promoter-TSS (NM_001347386)	-90.0	NM_001347384	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	113.87	117.97	88.99	116.64	117.41	157.41	73.08	86.94	139.06	102.93	123.11	93.67
Merged-chr1-191269711-3	chr1	191269627	191269827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45273.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	105.79	74.45	140.33	131.12	142.78	147.07	152.47	219.0	124.7	115.99	188.43	93.98
Merged-chr13-97584360-3	chr13	97584259	97584459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_046157)	TTS (NR_046157)	24359.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	35.94	20.37	63.32	46.66	29.86	36.06	42.19	32.33	29.11	25.61	36.18	22.24
Merged-chr10-77551130-3	chr10	77551030	77551230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	20782.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	119.93	130.79	189.96	137.95	164.87	225.15	167.75	189.76	142.4	148.62	209.03	114.34
Merged-chr5-29948321-3	chr5	29948240	29948440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64774.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	157.08	125.76	147.75	149.22	123.96	148.01	149.81	124.99	146.93	134.56	159.79	98.37
Merged-chr7-19327346-3	chr7	19327296	19327496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17351.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	97.31	80.99	90.13	82.05	92.87	97.52	69.42	83.52	163.05	137.58	141.7	78.32
Merged-chr13-58067949-3	chr13	58067853	58068053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	34475.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	87.22	84.26	69.03	104.17	112.5	125.74	65.11	95.66	107.39	113.48	151.25	53.57
Merged-chr12-91710712-3	chr12	91710610	91710810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	L1Md_A|LINE|L1	75726.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	32.3	19.12	21.68	15.28	24.96	24.46	37.87	23.83	30.29	27.11	36.68	17.86
Merged-chr3-99141290-3	chr3	99141169	99141369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027462, intron 1 of 5)	CpG	179.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	86.01	99.86	58.19	102.96	82.64	94.07	139.51	91.12	115.65	135.57	142.71	100.25
Merged-chr9-59617214-3	chr9	59617121	59617321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038075)	promoter-TSS (NR_038075)	-63.0	NR_038075	67287.0	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	196.24	150.41	137.48	154.04	208.23	247.1	148.48	165.31	188.23	213.39	212.05	94.61
Merged-chr12-69893154-3	chr12	69893052	69893252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201519)	promoter-TSS (NM_201519)	11.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	70.66	61.62	64.46	66.36	76.09	63.97	55.8	73.15	62.94	56.24	101.5	33.83
Merged-chr3-95217271-3	chr3	95217175	95217375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-182.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	88.84	56.34	68.45	47.06	51.55	72.12	45.18	62.08	82.61	68.79	85.42	46.99
Merged-chr3-87919515-3	chr3	87919397	87919597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-47.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	80.76	65.65	78.72	89.29	77.32	97.83	56.14	66.2	100.31	101.43	92.96	65.79
Merged-chr9-121719516-1	chr9	121719416	121719616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010918, exon 2 of 17)	exon (NM_010918, exon 2 of 17)	335.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	33.92	44.77	50.2	43.04	36.41	61.15	56.47	33.62	69.43	45.19	69.34	28.82
Merged-chr5-28317008-3	chr5	28316919	28317119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028234)	promoter-TSS (NM_028234)	-170.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	39.17	27.42	28.52	38.21	37.64	26.34	30.89	38.52	34.03	43.18	58.29	18.48
Merged-chr7-142394420-3	chr7	142394312	142394512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6542.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	25.84	17.61	25.67	16.89	15.55	21.95	16.61	28.91	27.93	35.65	41.71	22.87
Merged-chr8-3631134-3	chr8	3631037	3631237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	28.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	33.52	29.68	34.8	34.99	49.91	33.55	25.91	40.51	52.91	53.22	64.32	31.01
Merged-chr2-122145969-3	chr2	122145864	122146064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-1723.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	35.13	33.7	58.76	26.14	27.82	26.97	17.61	19.49	24.0	19.08	34.17	20.36
Merged-chr13-37526336-3	chr13	37526232	37526432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180987.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	42.4	33.2	71.88	53.09	52.37	58.64	57.47	81.48	67.07	75.32	98.49	52.94
Merged-chr15-25358124-2	chr15	25358021	25358221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	55643.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.04	5.28	9.7	6.84	32.73	22.58	20.59	34.29	45.24	38.66	42.71	26.94
Merged-chr11-83789421-3	chr11	83789319	83789519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35782.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	47.24	40.75	39.93	49.07	42.96	52.05	29.9	42.73	59.79	54.23	51.76	35.71
Merged-chr2-6721694-3	chr2	6721597	6721797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-35.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	34.73	36.22	35.37	37.0	29.46	36.69	31.56	32.72	46.03	36.65	50.75	36.97
Merged-chr13-52024927-3	chr13	52024800	52025000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71841.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	11.31	15.09	23.96	9.25	29.86	22.58	15.94	30.95	19.67	18.08	22.11	11.59
Merged-chr11-116087050-3	chr11	116086952	116087152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-57.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	127.6	108.41	84.43	89.69	143.6	151.14	66.77	76.04	165.22	166.2	136.68	83.33
Merged-chr3-20155006-3	chr3	20154899	20155099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013755, exon 1 of 7)	exon (NM_013755, exon 1 of 7)	117.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	31.5	23.9	30.23	25.34	25.77	52.37	37.87	35.07	30.88	24.6	26.13	20.99
Merged-chr2-154676831-1	chr2	154676731	154676931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	19805.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	13.73	13.08	3.42	10.86	2.45	5.02	3.65	3.56	7.67	6.53	5.53	5.01
Merged-chr3-97658220-3	chr3	97658125	97658325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182997)	promoter-TSS (NM_182997)	13.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	129.62	108.66	94.7	133.93	133.37	139.23	116.59	136.71	156.76	154.15	167.83	105.57
Merged-chr9-115485470-1	chr9	115485370	115485570	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	103651.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	1.62	2.01	0.0	1.61	2.45	0.0	0.0	0.95	27.54	22.09	49.24	23.49
Merged-chr7-110773339-3	chr7	110773256	110773456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	752.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	39.57	34.46	58.19	55.5	42.55	46.1	37.87	55.77	47.8	42.18	68.34	50.44
Merged-chr4-135300516-3	chr4	135300483	135300683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27823.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	85.6	87.78	116.37	71.99	19.64	16.93	11.29	14.55	18.49	19.58	19.6	15.35
Merged-chr8-126566155-3	chr8	126566057	126566257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27279.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	78.74	71.69	104.96	53.49	129.69	141.11	102.31	124.65	87.33	81.84	88.44	49.5
Merged-chr17-27615582-3	chr17	27615465	27615665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019837, intron 1 of 4)	L2|LINE|L2	7399.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	24.23	19.37	44.5	18.9	38.05	36.37	25.24	40.43	19.47	15.57	30.15	17.86
Merged-chr3-55354205-3	chr3	55354102	55354302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-107526.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	67.03	73.7	147.75	88.89	135.0	109.12	111.94	156.84	147.71	170.21	169.84	105.26
Merged-chr9-83555804-3	chr9	83555716	83555916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	7478.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	18.57	19.62	31.95	13.27	18.41	36.06	15.28	25.82	41.89	26.11	28.64	19.74
Merged-chr8-46732749-3	chr8	46732631	46732831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6784.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	21.0	16.1	26.24	30.97	32.32	47.98	23.92	33.48	38.75	27.11	39.19	27.25
Merged-chr19-37435908-3	chr19	37435826	37436026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1085.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	32.71	17.36	38.22	26.95	22.91	20.7	13.95	35.36	17.9	28.12	26.63	9.4
Merged-chr4-148041099-3	chr4	148041003	148041203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-86.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	44.82	33.2	38.79	48.26	44.18	44.21	43.18	35.89	73.95	61.76	90.95	46.99
Merged-chr8-11635154-3	chr8	11635050	11635250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030781)	promoter-TSS (NR_030781)	-114.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	40.38	30.69	34.8	43.04	42.14	47.04	57.47	42.17	24.78	26.11	51.25	25.06
Merged-chr7-132735391-3	chr7	132735287	132735487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41529.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	27.86	38.99	34.8	40.62	52.37	68.99	47.5	57.76	40.52	49.21	82.41	26.31
Merged-chr1-92658773-1	chr1	92658673	92658873	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9932.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	2.02	1.51	6.28	7.64	4.91	3.76	14.62	15.45	3.34	4.52	9.04	6.27
Merged-chr17-35353184-2	chr17	35353084	35353284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	10851.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	31.5	24.4	33.66	39.01	22.09	29.79	18.93	26.94	2.36	0.5	2.51	0.63
Merged-chr18-35553368-3	chr18	35553270	35553470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038073)	promoter-TSS (NR_038073)	-40.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	20.59	34.46	23.96	45.45	49.91	42.33	29.56	45.08	49.37	46.7	49.24	33.52
Merged-chr16-33933483-3	chr16	33933366	33933566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33572.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	30.28	13.33	47.92	40.62	46.64	34.49	36.21	54.17	29.31	33.64	52.76	18.48
Merged-chr7-29908596-3	chr7	29908402	29908602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243908)	promoter-TSS (NM_001243908)	-15.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	12.11	17.61	18.25	29.76	24.14	24.77	14.62	19.54	19.67	33.64	33.67	25.06
Merged-chr1-128359727-3	chr1	128359619	128359819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313695)	promoter-TSS (NM_001313695)	-14.0	NM_008567	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	76.32	67.16	45.07	79.23	83.46	96.58	48.83	85.85	102.47	86.86	137.68	54.2
Merged-chr19-12473476-3	chr19	12473347	12473547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	12668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	54.92	48.04	54.19	45.05	71.59	92.5	52.15	42.9	40.91	49.71	39.19	27.25
Merged-chr4-40279398-3	chr4	40279274	40279474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033305)	promoter-TSS (NM_001033305)	47.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	73.49	61.12	58.19	60.33	64.23	77.45	45.51	67.04	75.53	93.39	75.87	41.98
Merged-chr1-172482110-3	chr1	172482003	172482203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-110.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	33.52	28.93	39.36	31.37	37.23	40.14	47.17	33.73	38.55	49.21	65.32	16.29
Merged-chr4-58586163-3	chr4	58586063	58586263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32672.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	56.13	59.36	84.43	92.91	58.5	64.91	47.17	88.09	63.53	56.24	87.93	40.1
Merged-chr5-151190264-3	chr5	151190172	151190372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163493)	promoter-TSS (NM_001163493)	-79.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	17.77	11.32	26.81	14.88	34.36	25.09	29.23	49.99	49.76	42.68	105.52	37.59
Merged-chr1-34389770-3	chr1	34389674	34389874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43425.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	56.94	52.82	78.15	91.3	72.82	77.77	77.73	94.99	83.59	72.3	101.0	62.65
Merged-chr7-127478910-3	chr7	127478801	127479001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6320.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	136.89	142.62	147.18	91.3	145.64	196.92	124.56	107.24	195.7	212.39	195.97	109.96
Merged-chr7-73618461-3	chr7	73618331	73618531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-60036.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	202.71	205.75	215.06	176.97	178.78	251.8	137.19	178.63	230.13	224.94	236.67	149.11
Merged-chr8-70302558-3	chr8	70302449	70302649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021538)	promoter-TSS (NM_021538)	-97.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	27.86	23.39	17.11	16.09	29.05	33.87	15.61	21.79	40.12	34.65	23.11	22.56
Merged-chr8-25440453-1	chr8	25440353	25440553	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78306.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	4.04	1.26	0.0	0.4	6.55	2.82	4.98	1.51	0.39	3.01	2.01	3.76
Merged-chr16-91406281-3	chr16	91406164	91406364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	29.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	62.99	50.56	65.6	45.05	42.14	72.75	65.77	47.78	74.74	73.81	112.05	34.77
Merged-chr12-80130848-3	chr12	80130754	80130954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	1990.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	29.07	30.43	41.07	30.57	51.14	46.72	32.55	44.38	61.56	54.23	82.41	33.21
Merged-chr15-86186155-3	chr15	86186038	86186238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	3.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	33.11	33.7	50.77	39.42	36.0	51.43	49.83	58.93	38.75	33.14	49.75	27.25
Merged-chr2-34406833-3	chr2	34406739	34406939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177345)	promoter-TSS (NM_177345)	-12.0	NM_177345	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	111.45	98.85	108.96	119.86	110.87	138.29	76.07	90.08	136.89	107.95	169.34	82.7
Merged-chr17-88065383-3	chr17	88065279	88065479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-88.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	14.94	23.64	21.11	15.28	18.41	28.54	24.58	22.23	29.11	38.66	28.64	22.87
Merged-chr8-27023126-3	chr8	27023017	27023217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-682.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	62.99	42.01	90.7	61.94	56.46	98.15	59.13	61.85	111.33	53.73	116.07	67.04
Merged-chr6-65594395-3	chr6	65594293	65594493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001495, intron 2 of 7)	intron (NM_001001495, intron 2 of 7)	3995.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	66.22	66.91	96.98	86.47	72.0	77.45	63.11	75.84	81.43	87.37	105.52	62.97
Merged-chr5-140739990-3	chr5	140739897	140740097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	15870.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	66.22	37.73	57.62	59.93	67.91	47.04	40.52	90.28	47.8	22.59	38.19	46.99
Merged-chr16-23127812-3	chr16	23127696	23127896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145480)	promoter-TSS (NM_145480)	-66.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	69.86	61.37	83.86	71.99	93.28	86.55	44.84	67.07	105.23	119.0	117.08	65.47
Merged-chr5-100526362-3	chr5	100526276	100526476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359204, intron 2 of 10)	intron (NM_001359204, intron 2 of 10)	8067.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	56.53	45.02	41.07	74.41	55.23	77.45	54.14	60.14	53.3	68.29	81.4	36.65
Merged-chr3-96759881-3	chr3	96759774	96759974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	32263.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	16.15	27.92	36.51	32.58	35.59	47.35	43.85	42.9	33.44	38.16	35.68	21.62
Merged-chr12-85705559-4	chr12	85705415	85705615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18795.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	57.74	60.12	58.19	70.38	67.09	92.19	73.08	58.99	77.69	62.26	66.83	46.99
Merged-chr10-76237950-3	chr10	76237854	76238054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-89.0	NM_133182	15468.0	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	61.38	60.87	65.6	72.8	59.32	84.98	57.47	80.58	67.27	64.27	87.43	35.4
Merged-chr8-36249516-3	chr8	36249418	36249618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-2.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	186.15	177.08	231.03	175.36	216.42	275.94	202.62	187.46	326.31	284.69	447.21	169.16
Merged-chr8-46811490-3	chr8	46811384	46811584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	71739.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	22.21	30.18	42.21	37.0	95.32	105.05	54.81	104.41	91.07	99.42	86.43	67.35
Merged-chr3-32397010-3	chr3	32396929	32397129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31364.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	172.02	157.46	205.93	191.85	204.14	211.66	180.7	228.67	232.88	233.48	292.44	157.26
Merged-chr5-21701550-3	chr5	21701501	21701701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359963)	promoter-TSS (NM_001359963)	21.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	102.16	132.3	106.68	170.93	119.87	155.22	182.36	155.72	151.45	181.76	209.54	129.38
Merged-chr3-69126588-2	chr3	69126481	69126681	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008467, intron 1 of 16)	CpG	511.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	21.0	19.62	25.1	17.29	28.64	25.4	30.23	32.22	46.81	46.19	73.86	32.27
Merged-chr17-71288310-3	chr17	71288215	71288415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	22696.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	93.28	57.35	63.32	82.05	112.5	134.21	100.32	124.63	85.76	78.33	93.96	45.42
Merged-chr2-32608763-3	chr2	32608662	32608862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289549, intron 2 of 6)	intron (NM_001289549, intron 2 of 6)	1777.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	101.76	102.62	108.39	67.17	123.14	143.93	70.75	72.98	115.46	109.96	124.62	67.67
Merged-chr9-56417663-3	chr9	56417556	56417756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	394.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	44.42	42.26	27.38	32.58	37.64	52.37	20.59	28.07	41.7	59.25	53.26	27.57
Merged-chr4-101357519-3	chr4	101357435	101357635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-1287.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	36.34	32.2	37.08	23.73	27.41	25.71	19.27	34.01	48.58	33.64	67.33	27.25
Merged-chr11-61793587-3	chr11	61793484	61793684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-31496.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	71.47	48.04	85.0	67.17	66.68	52.37	73.08	85.99	59.2	36.15	86.43	43.23
Merged-chr1-60580053-3	chr1	60579959	60580159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-13294.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	69.05	68.16	111.24	120.26	55.23	63.66	84.37	95.58	65.89	47.2	61.81	42.29
Merged-chr1-87849502-3	chr1	87849377	87849577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3810.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	48.86	43.26	46.78	53.09	46.23	67.1	46.84	65.92	57.24	58.24	86.93	29.45
Merged-chr5-8805997-3	chr5	8805881	8806081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011075, intron 3 of 27)	intron (NM_011075, intron 3 of 27)	-7458.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	37.15	52.32	83.29	97.73	76.91	47.98	71.75	90.84	34.81	33.64	60.3	31.01
Merged-chr13-45444874-3	chr13	45444745	45444945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55103.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	30.69	23.64	25.1	39.82	42.96	66.79	51.15	44.52	29.31	19.58	29.14	10.34
Merged-chr4-74251842-3	chr4	74251741	74251941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144787)	promoter-TSS (NM_144787)	-38.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	241.87	260.83	235.03	309.29	309.69	309.81	216.91	359.66	378.23	359.51	453.24	262.83
Merged-chr10-68105413-3	chr10	68105307	68105507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 8 of 9)	(T)n|Simple_repeat|Simple_repeat	125837.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	59.36	35.21	50.2	53.89	51.14	56.76	46.5	98.78	53.11	48.7	57.79	41.66
Merged-chr12-112895180-3	chr12	112895068	112895268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25373.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	61.38	53.07	65.03	64.35	41.73	52.99	39.86	59.38	48.39	22.59	61.81	22.56
Merged-chr3-32736916-3	chr3	32736807	32737007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	-152.0	NM_029017	74600.0	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	149.4	210.53	205.36	214.37	218.87	253.68	194.32	210.25	263.17	239.5	229.13	153.81
Merged-chr3-58516866-3	chr3	58516771	58516971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8950.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	47.65	49.05	53.05	41.43	42.55	49.23	31.89	57.0	44.45	31.63	46.23	21.3
Merged-chr17-34605788-3	chr17	34605699	34605899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-62.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	48.05	60.62	53.62	32.18	54.41	65.22	32.55	34.09	81.23	55.23	81.9	41.04
Merged-chr2-48694738-3	chr2	48694639	48694839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119370.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	30.28	19.37	37.08	36.6	33.14	21.64	20.59	34.51	37.17	28.12	37.18	22.87
Merged-chr8-94179727-1	chr8	94179627	94179827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013602, intron 1 of 2)	intron (NM_013602, intron 1 of 2)	638.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	12.11	14.59	11.98	8.45	13.09	16.31	12.95	16.82	21.24	20.08	13.57	12.84
Merged-chr13-21180128-5	chr13	21180021	21180221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009054, exon 1 of 8)	5' UTR (NM_009054, exon 1 of 8)	190.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	22.21	17.61	41.07	28.96	24.55	35.12	38.2	30.34	45.24	38.16	59.8	34.46
Merged-chrX-93756064-3	chrX	93755963	93756163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76032.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	39.57	27.17	66.17	56.71	47.87	52.99	62.78	61.32	51.53	47.2	53.26	27.25
Merged-chr1-171184511-3	chr1	171184417	171184617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025557, intron 1 of 2)	URR1B|DNA|hAT-Charlie	11751.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	48.46	42.26	46.78	39.82	71.18	65.22	29.56	39.06	73.17	79.33	72.86	58.58
Merged-chr9-89705055-3	chr9	89704977	89705177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025360)	promoter-TSS (NM_025360)	-34.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	63.8	78.98	82.72	102.96	96.55	116.96	82.71	149.41	127.85	89.37	150.24	79.26
Merged-chr2-98662637-3	chr2	98662538	98662738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1194981.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	849.59	916.06	864.81	900.93	690.57	401.37	913.47	408.0	915.39	927.39	735.13	1495.53
Merged-chr16-32099766-3	chr16	32099664	32099864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025892)	promoter-TSS (NM_025892)	-37.0	NM_024464	72084.0	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	59.76	59.36	49.63	41.83	57.68	55.82	26.24	41.38	77.3	66.28	88.94	29.76
Merged-chr11-69410457-3	chr11	69410359	69410559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	3216.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	96.51	62.63	80.43	94.52	81.82	91.88	87.36	64.93	109.36	118.5	123.11	68.92
Merged-chr10-118103446-3	chr10	118103335	118103535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38352.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	222.09	145.38	159.16	184.61	243.83	295.07	230.86	246.45	274.38	236.99	336.66	162.9
Merged-chr8-105348016-3	chr8	105347914	105348114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081332)	promoter-TSS (NM_001081332)	-44.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	162.33	134.57	144.9	152.03	148.1	211.98	139.84	158.05	208.29	149.63	208.53	73.62
Merged-chr4-44168325-3	chr4	44168215	44168415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	-32.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	101.76	55.84	63.32	59.53	83.87	63.34	43.51	72.62	93.43	81.84	130.14	61.4
Merged-chr12-54369401-3	chr12	54369294	54369494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21924.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	30.69	41.25	32.52	24.53	51.14	69.3	29.9	33.0	94.8	131.55	110.55	39.16
Merged-chr11-29308319-3	chr11	29308215	29308415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-61043.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	14.94	16.1	32.52	30.57	19.64	15.05	22.92	16.26	28.72	27.62	30.65	17.23
Merged-chr10-61383624-5	chr10	61383535	61383735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013753)	promoter-TSS (NM_013753)	-112.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	26.25	22.89	23.96	27.75	32.73	33.55	32.55	29.55	26.75	53.73	38.69	22.56
Merged-chr16-11066255-3	chr16	11066154	11066354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-44.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	136.48	119.73	147.18	134.33	123.14	132.33	120.91	146.61	155.97	117.99	239.68	94.29
Merged-chr7-100121558-3	chr7	100121442	100121642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-42.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	110.64	96.34	90.13	87.68	114.96	140.79	50.49	79.99	153.81	106.95	129.64	77.38
Merged-chr11-55208446-3	chr11	55208356	55208556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	4116.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	69.45	53.32	112.38	82.05	65.05	61.46	79.06	98.13	51.73	46.19	69.34	62.34
Merged-chr4-71291988-3	chr4	71291890	71292090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-757062.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	76.32	72.94	69.03	105.78	123.96	151.14	178.71	108.79	186.46	192.81	252.25	144.73
Merged-chr4-83309074-3	chr4	83308963	83309163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	MTC|LTR|ERVL-MaLR	15126.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	58.15	64.39	120.37	81.24	108.82	128.88	131.54	127.01	103.46	105.44	140.19	78.63
Merged-chr11-106674821-3	chr11	106674713	106674913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	40468.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	42.8	61.88	39.36	30.57	66.68	56.76	28.23	20.69	58.61	54.73	46.73	29.45
Merged-chr18-12941813-3	chr18	12941738	12941938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207530)	promoter-TSS (NM_207530)	3.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	103.37	100.61	112.95	111.01	135.41	153.02	118.59	136.74	156.76	154.15	179.39	108.08
Merged-chr1-74391511-3	chr1	74391405	74391605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-104.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	165.56	161.73	163.72	164.5	145.23	221.07	161.44	166.49	190.39	230.97	305.01	128.44
Merged-chr15-34580084-3	chr15	34579968	34580168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145469, intron 8 of 10)	intron (NM_145469, intron 8 of 10)	84757.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	15.75	17.61	30.8	42.63	29.05	24.77	46.17	53.94	27.54	19.08	55.78	24.12
Merged-chr3-5575928-1	chr3	5575828	5576028	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008994, intron 1 of 5)	CpG	320.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	96.91	75.96	95.27	105.38	103.09	107.56	93.67	124.77	134.93	156.15	160.29	92.73
Merged-chr18-38367413-3	chr18	38367316	38367516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28423.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	34.32	35.72	30.23	34.19	72.41	53.93	33.55	54.53	60.19	50.21	84.42	27.57
Merged-chr2-167062704-3	chr2	167062586	167062786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138563)	promoter-TSS (NR_138563)	-248.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	105.39	93.07	102.68	92.91	131.32	151.46	77.06	114.48	149.09	162.18	180.89	73.3
Merged-chr14-55743929-3	chr14	55743821	55744021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026819, intron 2 of 8)	intron (NM_026819, intron 2 of 8)	1763.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	41.19	33.7	39.93	32.58	47.46	45.15	23.58	37.23	53.89	56.24	61.81	41.35
Merged-chr17-56304200-3	chr17	56304109	56304309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-104.0	NM_001111078	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	58.15	48.04	36.51	65.16	68.73	62.71	28.57	49.54	73.95	78.33	91.95	37.91
Merged-chr18-12741292-3	chr18	12741192	12741392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-63.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	113.06	115.45	125.5	131.52	121.91	150.83	95.33	137.3	179.38	175.23	162.8	100.87
Merged-chr6-116669273-3	chr6	116669162	116669362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	MLTR14|LTR|ERV1	4574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	77.93	77.22	88.99	58.72	78.14	113.51	57.13	61.01	95.2	98.91	93.96	59.83
Merged-chr8-18899273-3	chr8	18899153	18899353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51618.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	16.96	26.66	38.79	37.4	36.41	27.91	38.53	39.36	24.19	24.6	36.68	20.36
Merged-chr4-108428456-3	chr4	108428342	108428542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21729.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	35.53	44.77	79.86	56.71	39.27	51.74	47.5	65.92	59.79	49.21	55.27	41.04
Merged-chr8-40644959-1	chr8	40644859	40645059	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-10167.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.0	0.0	1.14	0.0	0.0	0.0	0.0	0.0	23.8	20.59	30.15	17.23
Merged-chr4-53012090-4	chr4	53011971	53012171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025623, intron 1 of 5)	CpG	191.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	90.05	116.46	87.28	94.52	100.23	157.41	126.22	86.58	78.28	120.0	88.94	66.41
Merged-chr11-52046949-3	chr11	52046862	52047062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	42741.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	25.44	14.09	44.5	22.52	20.46	20.38	15.28	20.19	36.19	15.57	41.71	23.18
Merged-chr4-53125290-3	chr4	53125181	53125381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34614.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	34.73	17.1	25.67	35.39	67.5	36.37	29.56	54.59	32.06	38.16	47.23	19.74
Merged-chr7-101378073-3	chr7	101377984	101378184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-38.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	104.18	101.11	111.24	67.97	107.59	126.06	109.28	100.51	135.71	109.96	151.75	58.89
Merged-chr12-110991774-3	chr12	110991681	110991881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2617.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	18.17	9.06	15.97	16.09	27.0	26.65	12.29	15.06	24.0	37.66	34.67	18.48
Merged-chr11-79076698-3	chr11	79076612	79076812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-16876.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	16.15	23.14	50.2	26.14	31.09	43.9	14.95	29.38	31.27	20.59	26.13	20.68
Merged-chr6-65165192-3	chr6	65165088	65165288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20458.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	35.13	21.38	27.95	63.55	45.41	35.43	41.52	55.04	44.65	38.16	68.84	40.41
Merged-chr3-10077320-3	chr3	10077195	10077395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10982.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	21.0	29.43	32.52	30.97	21.68	50.49	19.93	22.35	21.05	29.62	31.15	18.17
Merged-chr4-140964208-3	chr4	140964117	140964317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	2946.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	65.82	45.78	68.45	51.48	63.0	50.49	72.75	86.83	60.58	47.7	82.91	50.75
Merged-chrM-15104-2	chrM	14983	15183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											42670.7	47239.22	53735.3	60449.41	41648.37	49740.8	54435.17	62216.72	0.0	0.0	0.0	0.0
Merged-chr8-71367502-3	chr8	71367399	71367599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025917, intron 1 of 7)	intron (NM_025917, intron 1 of 7)	282.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	67.84	75.46	73.59	53.49	54.82	70.87	39.86	58.49	101.49	108.96	112.56	62.65
Merged-chr9-120885180-2	chr9	120885080	120885280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30070.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	20.59	24.15	22.82	24.13	25.77	16.93	17.61	32.07	5.9	3.01	4.52	7.52
Merged-chr10-41587514-3	chr10	41587422	41587622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 31 of 47)	intron (NM_001358562, intron 31 of 47)	19506.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	62.18	42.01	35.37	37.4	53.18	46.41	45.18	50.72	60.19	52.72	79.39	31.33
Merged-chr17-73970580-3	chr17	73970487	73970687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20391.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	30.28	19.12	40.5	56.31	52.37	37.63	52.15	82.93	45.04	43.18	83.41	48.87
Merged-chr16-49840250-3	chr16	49840197	49840397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15357.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	86.41	67.41	81.0	99.75	95.73	101.6	136.19	125.47	117.62	120.0	162.3	72.05
Merged-chr7-25794953-3	chr7	25794836	25795036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6203.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	18.98	13.08	38.79	23.73	32.73	36.69	18.27	34.04	38.16	29.62	41.2	25.37
Merged-chr4-99187002-3	chr4	99186902	99187102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6932.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	205.13	198.46	215.63	182.6	203.73	265.28	191.33	194.83	298.38	304.28	333.15	206.44
Merged-chr8-94778670-3	chr8	94778525	94778725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	6445.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	32.3	31.19	18.83	24.94	38.05	36.37	40.19	34.12	29.7	20.08	42.21	15.98
Merged-chr19-21897579-3	chr19	21897462	21897662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119222.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	70.26	49.55	84.43	98.94	73.64	59.27	66.43	89.47	96.38	54.73	93.46	39.47
Merged-chr15-102471183-3	chr15	102471099	102471299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174073, intron 1 of 12)	CpG	567.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	22.61	34.96	31.95	14.88	20.46	34.81	26.91	28.35	40.12	43.68	39.19	29.13
Merged-chr7-30322407-3	chr7	30322319	30322519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-44.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	154.25	168.27	204.22	168.92	218.05	224.2	197.64	208.18	193.93	193.31	232.65	103.38
Merged-chr16-55973760-3	chr16	55973668	55973868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173026)	promoter-TSS (NM_173026)	-36.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	235.41	235.68	217.34	217.19	227.05	315.45	189.34	275.05	319.03	348.46	374.85	201.12
Merged-chrX-42018172-1	chrX	42018072	42018272	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49664.0	NM_009688	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	5.25	8.05	11.41	6.84	2.86	3.76	8.97	8.89	4.52	6.53	3.01	3.76
Merged-chr17-17866760-3	chr17	17866654	17866854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-11566.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	75.91	56.09	38.22	17.29	56.05	83.1	40.86	22.21	107.0	90.38	91.45	22.56
Merged-chr17-35910143-3	chr17	35910049	35910249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142745)	promoter-TSS (NM_001142745)	-74.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	155.46	135.32	123.79	113.02	137.87	194.73	96.66	104.58	179.77	154.15	156.77	99.62
Merged-chr7-126822206-3	chr7	126822097	126822297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026884, intron 4 of 7)	intron (NM_026884, intron 4 of 7)	-1106.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	11.31	19.37	17.68	15.69	37.64	35.12	27.9	20.33	26.75	24.6	35.17	23.49
Merged-chr5-114922082-3	chr5	114921980	114922180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1160.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	93.28	98.85	89.56	57.11	74.87	120.73	71.08	78.42	120.37	104.44	108.54	59.52
Merged-chr4-141872238-3	chr4	141872142	141872342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2678.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	20.59	22.89	24.53	27.75	19.23	32.61	31.22	34.4	37.37	30.13	55.27	26.94
Merged-chr13-111797200-3	chr13	111797090	111797290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11803.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	52.49	46.53	41.64	32.58	64.64	76.83	48.16	73.07	88.12	64.27	127.13	51.38
Merged-chr4-125145390-3	chr4	125145300	125145500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17519.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	132.04	145.38	167.71	117.84	169.78	199.43	159.77	146.22	118.21	114.98	164.81	77.69
Merged-chr16-5050433-1	chr16	5050333	5050533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001079814)	promoter-TSS (NM_001079814)	376.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	29.88	26.16	28.52	24.13	18.82	26.97	22.59	16.37	39.93	46.19	47.74	28.19
Merged-chr12-85913298-3	chr12	85913213	85913413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 19 of 32)	RSINE1|SINE|B4	88363.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	41.19	18.61	47.35	43.04	56.46	39.82	25.91	66.65	67.66	38.16	80.9	36.34
Merged-chr2-167860711-3	chr2	167860622	167860822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71605.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	37.55	35.72	62.18	65.56	85.09	34.49	57.47	98.38	40.91	35.65	84.92	40.1
Merged-chr10-117899604-3	chr10	117899522	117899722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25837.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	83.99	79.48	116.94	146.8	115.78	131.07	109.28	140.44	134.14	96.4	208.03	89.91
Merged-chr14-105431750-3	chr14	105431653	105431853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	4194.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	38.36	59.36	75.87	84.46	46.23	37.94	37.2	48.36	84.38	59.75	120.09	44.8
Merged-chr15-39944657-3	chr15	39944562	39944762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-668.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	39.57	26.41	22.82	27.35	32.32	27.91	16.61	37.01	24.98	22.59	37.69	22.87
Merged-chr1-176832790-3	chr1	176832699	176832899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	3334.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	54.51	45.28	63.32	40.22	62.59	60.83	45.84	65.3	75.92	78.33	90.45	67.04
Merged-chr1-136624872-3	chr1	136624778	136624978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177643)	promoter-TSS (NM_177643)	-23.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	77.12	49.3	74.16	57.11	83.87	79.96	63.44	98.36	69.63	92.39	117.08	43.86
Merged-chr11-77078484-3	chr11	77078372	77078572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030756)	promoter-TSS (NR_030756)	-35.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	55.32	44.52	60.47	42.63	65.05	64.91	24.91	51.53	74.94	51.21	84.92	45.74
Merged-chr2-22807518-3	chr2	22807421	22807621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	33194.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	29.88	20.37	26.24	28.96	39.68	26.65	23.58	29.92	30.88	24.6	40.7	18.8
Merged-chr14-62761301-3	chr14	62761193	62761393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-181.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	200.28	218.07	213.35	182.2	225.42	243.02	142.17	186.03	267.1	310.8	295.46	157.57
Merged-chr8-125725172-3	chr8	125725083	125725283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9020.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	142.14	101.11	140.9	152.84	144.0	132.64	111.61	116.69	119.39	145.11	140.7	74.24
Merged-chr15-98934539-3	chr15	98934422	98934622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-132.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	72.68	73.7	53.05	51.48	84.68	88.11	35.87	54.93	98.34	82.85	140.7	55.76
Merged-chr12-8927819-3	chr12	8927738	8927938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6531.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	154.65	117.46	160.87	149.62	149.73	149.89	127.89	195.42	213.8	180.76	240.19	139.72
Merged-chr1-91024130-3	chr1	91024034	91024234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25407.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	58.55	52.32	67.88	48.67	71.59	78.71	47.17	76.82	71.2	65.27	92.96	41.98
Merged-chr9-123925453-3	chr9	123925323	123925523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	43269.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	56.13	47.54	48.49	44.24	36.41	40.76	27.24	14.55	40.52	56.74	32.16	33.52
Merged-chr1-86703846-3	chr1	86703731	86703931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153530)	promoter-TSS (NM_153530)	27.0	NM_001172157	208718.0	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	37.96	20.12	11.98	12.07	24.96	23.52	15.61	22.46	33.04	35.15	41.2	33.83
Merged-chr5-111178574-5	chr5	111178517	111178717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152080.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	30.69	33.96	35.94	36.2	33.14	42.02	34.88	46.32	47.6	36.65	78.39	35.09
Merged-chr3-58690755-3	chr3	58690662	58690862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009174, intron 1 of 1)	intron (NM_009174, intron 1 of 1)	1626.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	50.07	84.51	90.13	87.28	75.28	58.64	67.1	83.97	79.66	81.34	103.01	56.7
Merged-chr9-100435434-3	chr9	100435371	100435571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51002.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	92.47	74.2	91.84	46.25	72.0	133.9	81.71	53.47	63.33	67.28	56.28	26.0
Merged-chr6-50294332-3	chr6	50294222	50294422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-32553.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	27.86	26.91	13.69	19.31	20.05	32.93	19.6	24.42	46.42	36.65	44.22	20.05
Merged-chr7-118522278-3	chr7	118522177	118522377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304758, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	11079.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	25.44	23.14	38.22	34.19	38.46	58.32	36.54	57.31	43.86	51.72	82.41	38.22
Merged-chr16-10786046-1	chr16	10785946	10786146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-510.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	33.52	25.15	11.41	12.47	9.41	21.95	17.61	10.65	14.16	14.06	20.1	12.84
Merged-chr7-19699115-3	chr7	19698983	19699183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305819)	promoter-TSS (NM_001305819)	105.0	NM_001305843	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	16.56	28.42	31.95	26.95	52.77	28.54	36.87	34.23	21.05	33.64	36.68	23.18
Merged-chr10-29313434-3	chr10	29313316	29313516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025855)	promoter-TSS (NM_025855)	-84.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	100.95	111.93	99.26	144.39	129.28	138.91	166.75	118.37	113.88	132.56	173.36	72.68
Merged-chr19-44107441-3	chr19	44107303	44107503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007700)	promoter-TSS (NM_007700)	74.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	65.01	69.17	83.86	69.58	78.14	84.98	52.48	61.12	64.51	67.28	81.4	36.03
Merged-chr15-5447047-3	chr15	5446949	5447149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49269.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	46.84	33.2	23.96	22.93	55.64	49.86	47.5	57.17	94.8	60.75	63.31	33.21
Merged-chr17-28738145-3	chr17	28738045	28738245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31172.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	44.82	44.27	48.49	31.77	60.14	52.05	34.55	38.13	51.53	68.79	72.36	25.06
Merged-chr11-116031215-3	chr11	116031109	116031309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	893.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	30.28	33.96	20.54	13.27	36.82	54.56	16.61	20.78	63.33	43.68	36.18	27.88
Merged-chr7-116334177-3	chr7	116334085	116334285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	5.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	86.41	94.32	106.1	96.93	106.78	129.51	85.7	83.05	161.87	145.11	205.01	116.22
Merged-chr15-59089928-3	chr15	59089837	59090037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-7911.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	21.4	15.09	23.96	23.73	36.82	40.76	31.89	41.55	32.65	30.13	54.27	22.87
Merged-chr7-79780938-5	chr7	79780822	79781022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12668.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	14.13	20.12	17.68	18.9	10.23	9.41	13.95	9.2	15.54	28.62	13.06	8.46
Merged-chr4-130795107-3	chr4	130795013	130795213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	2576.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	38.76	24.4	74.16	57.92	66.27	43.59	73.74	83.27	72.58	63.77	101.0	73.62
Merged-chr11-118236738-3	chr11	118236637	118236837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11855.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	42.8	36.47	47.35	59.93	44.18	60.52	64.11	69.95	65.3	46.7	113.06	54.82
Merged-chr2-164769757-3	chr2	164769642	164769842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026785)	promoter-TSS (NM_026785)	-187.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	134.06	127.02	118.65	141.57	168.55	162.74	102.97	135.98	190.0	180.76	213.56	114.66
Merged-chr17-35209947-3	chr17	35209848	35210048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4597.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	19.79	19.87	30.23	28.56	24.96	26.03	17.27	25.49	34.42	23.6	29.14	20.99
Merged-chr17-28328359-4	chr17	28328262	28328462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-109.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	53.7	35.97	58.19	37.81	42.55	58.32	52.15	39.84	54.68	65.27	54.77	41.04
Merged-chr11-106787675-3	chr11	106787580	106787780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355676, intron 2 of 13)	CpG	814.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	86.41	89.29	71.31	91.7	76.09	104.42	67.76	86.44	117.03	108.45	104.52	67.67
Merged-chr9-7336940-3	chr9	7336856	7337056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7441.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	19.38	17.36	27.38	30.97	42.96	38.57	28.9	43.82	34.42	47.7	34.17	19.42
Merged-chr11-94990930-3	chr11	94990826	94991026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172261)	promoter-TSS (NM_172261)	-286.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	37.55	41.0	37.65	35.39	38.05	45.78	21.92	32.16	57.63	63.27	67.33	41.35
Merged-chr1-74304081-3	chr1	74303979	74304179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027154, intron 1 of 11)	CpG	257.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	31.9	34.46	57.05	53.09	43.77	60.21	54.81	35.47	43.07	41.17	47.74	31.64
Merged-chr11-54902874-3	chr11	54902792	54902992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329860)	promoter-TSS (NM_001329860)	38.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	21.0	16.6	38.79	24.94	30.27	39.2	22.59	40.15	31.67	24.6	32.16	15.98
Merged-chr18-34222872-3	chr18	34222760	34222960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1088.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	31.9	13.33	23.39	26.55	25.36	27.28	14.28	39.9	48.78	23.1	35.68	34.46
Merged-chrUn_GL456392-22150-1	chrUn_GL456392	22050	22250	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	35.8	42.68	30.15	31.33
Merged-chr9-90184491-1	chr9	90184391	90184591	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003911, intron 8 of 23)	intron (NM_001003911, intron 8 of 23)	21513.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.4	1.51	1.14	0.0	0.41	1.25	0.66	1.32	2.36	1.0	7.54	3.45
Merged-chr1-92180432-3	chr1	92180274	92180474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-33.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	266.1	269.13	355.96	352.73	312.15	379.74	311.24	347.05	374.89	352.48	449.22	261.58
Merged-chr19-23125439-3	chr19	23125322	23125522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15804.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	16.96	21.88	17.11	25.34	57.27	40.76	36.21	55.85	52.12	43.18	59.29	31.95
Merged-chr16-91793788-3	chr16	91793694	91793894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 5 of 15)	intron (NM_001110276, intron 5 of 15)	64423.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	37.15	21.13	34.23	33.78	29.86	31.67	42.19	28.01	48.78	39.67	49.24	29.45
Merged-chr18-77797310-3	chr18	77797214	77797414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-924.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	56.53	58.86	76.44	51.08	74.46	76.2	48.16	62.16	70.41	98.91	83.41	54.2
Merged-chr2-6471943-3	chr2	6471868	6472068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	119232.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	33.52	27.92	37.08	22.12	41.73	30.1	40.19	53.72	45.43	46.7	68.34	24.75
Merged-chr19-47855036-3	chr19	47854944	47855144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010362)	promoter-TSS (NM_010362)	71.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	62.59	56.34	49.63	46.25	48.68	77.45	48.16	50.19	62.15	45.19	59.8	27.57
Merged-chr9-56418214-3	chr9	56418100	56418300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	-150.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	204.32	182.36	166.57	197.88	205.78	265.6	158.11	185.16	267.69	264.11	308.52	175.43
Merged-chr3-101604112-3	chr3	101604020	101604220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	CpG	587.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	104.58	103.38	97.55	88.89	79.78	79.33	75.07	108.25	125.29	107.45	172.35	96.49
Merged-chr4-106839070-3	chr4	106838970	106839170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34063.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	50.88	29.93	35.37	42.63	49.5	54.25	28.23	46.82	70.41	47.2	62.31	43.54
Merged-chrX-163958714-3	chrX	163958616	163958816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009453)	promoter-TSS (NM_009453)	-50.0	NM_178794	22184.0	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	90.85	100.61	71.88	93.31	110.87	138.91	83.71	122.55	129.62	131.05	174.36	63.59
Merged-chr3-101836724-3	chr3	101836614	101836814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-491.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	20.59	29.93	33.09	24.13	34.36	41.71	27.9	27.08	41.5	32.64	23.62	23.18
Merged-chr17-34640931-3	chr17	34640819	34641019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3964.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	21.0	16.6	23.96	17.29	38.46	35.75	22.92	23.66	34.42	49.21	37.18	15.66
Merged-chr4-11322190-3	chr4	11322092	11322292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-61.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	67.84	78.48	54.19	86.07	110.46	96.58	71.75	91.37	115.26	128.54	133.66	73.3
Merged-chr1-173426550-3	chr1	173426445	173426645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5941.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	31.5	27.42	31.38	40.22	40.5	58.64	22.26	40.15	43.66	53.73	56.28	39.78
Merged-chr14-77923665-3	chr14	77923568	77923768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	19429.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	17.77	25.91	21.11	31.77	38.05	24.46	24.58	33.79	30.88	34.65	35.68	23.81
Merged-chr18-75304682-3	chr18	75304576	75304776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7347.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	75.91	38.99	98.69	52.29	74.46	55.19	51.15	91.85	72.97	57.74	96.98	46.99
Merged-chr13-48878753-3	chr13	48878629	48878829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033268)	TTS (NM_001033268)	-7844.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	156.27	112.18	151.74	119.05	157.91	162.43	114.27	127.68	143.39	135.07	191.45	84.9
Merged-chr4-155705033-3	chr4	155704897	155705097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026899, exon 1 of 5)	5' UTR (NM_026899, exon 1 of 5)	182.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	59.76	60.87	26.81	46.25	39.68	82.78	26.91	36.84	73.56	82.85	52.26	39.16
Merged-chr18-7693098-3	chr18	7693036	7693236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-66273.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	21.4	25.15	25.1	18.5	15.96	11.29	12.95	17.97	26.16	35.15	34.17	20.68
Merged-chr8-115522701-3	chr8	115522600	115522800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	184194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	28.27	30.94	25.1	25.34	40.5	62.71	22.59	42.25	45.04	41.17	71.86	38.22
Merged-chr7-130865746-3	chr7	130865648	130865848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346515)	promoter-TSS (NM_001346515)	24.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	239.85	242.22	259.56	265.85	235.23	285.35	204.62	234.53	274.38	285.7	371.33	192.97
Merged-chr9-48558882-3	chr9	48558800	48559000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46223.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	110.24	98.85	101.54	97.73	100.64	140.17	73.41	95.5	126.86	133.06	122.1	76.12
Merged-chr8-3467668-3	chr8	3467576	3467776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026951)	promoter-TSS (NM_026951)	-28.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	102.56	103.88	100.97	106.18	109.64	151.46	77.06	167.61	166.2	122.01	161.3	82.7
Merged-chr6-124814153-3	chr6	124814054	124814254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001326594)	TTS (NM_001326594)	142.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	71.47	46.53	54.19	61.94	81.0	66.79	39.53	66.53	67.07	92.39	113.06	49.18
Merged-chr8-57463008-3	chr8	57462908	57463108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7085.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	26.65	17.86	30.23	24.94	50.73	32.61	43.18	66.84	43.86	38.16	56.78	39.16
Merged-chr17-71257346-2	chr17	71257242	71257442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52688.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	47.65	62.38	74.16	40.62	97.37	138.29	101.98	109.12	5.31	2.51	0.5	3.76
Merged-chr14-46832115-3	chr14	46832005	46832205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-29.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	116.29	109.41	84.43	105.38	131.73	141.42	108.29	121.54	146.34	125.53	185.42	78.0
Merged-chr17-47184319-3	chr17	47184197	47184397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	43355.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	35.53	24.65	59.33	50.27	50.73	54.25	57.8	35.61	47.99	29.62	40.2	25.69
Merged-chr2-156324334-3	chr2	156324234	156324434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 2 of 12)	intron (NM_027585, intron 2 of 12)	-11630.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	26.65	28.67	23.96	21.72	23.73	20.38	12.29	23.02	31.67	27.62	26.13	20.99
Merged-chr14-55643353-7	chr14	55643230	55643430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360063)	promoter-TSS (NM_001360063)	41.0	NM_001360063	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	19.38	17.36	10.27	29.36	14.32	24.15	18.93	15.95	29.7	36.15	29.14	31.33
Merged-chr13-54590140-3	chr13	54590016	54590216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	-42.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	94.08	93.57	85.0	64.75	97.37	120.1	56.47	80.27	116.05	144.61	118.08	60.77
Merged-chr17-78736711-3	chr17	78736597	78736797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-137.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	333.13	306.61	375.93	358.36	404.19	435.55	315.89	449.08	458.87	507.13	633.13	282.25
Merged-chr15-38473499-2	chr15	38473392	38473592	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17055.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	43.61	30.43	43.93	37.4	49.91	55.19	46.5	62.66	54.88	51.72	77.88	49.5
Merged-chr17-80480461-3	chr17	80480417	80480617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009231)	promoter-TSS (NM_009231)	-64.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	43.21	39.74	47.35	40.22	55.64	46.1	39.53	52.09	62.55	70.8	66.83	33.83
Merged-chr14-60736780-3	chr14	60736684	60736884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	3880.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	123.16	139.35	126.64	115.83	144.82	140.48	95.0	89.47	126.67	117.99	120.6	47.62
Merged-chr3-61241524-1	chr3	61241424	61241624	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-122983.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.4	0.5	2.28	0.0	2.86	4.39	9.3	7.82	5.31	3.01	7.03	4.07
Merged-chr11-94979129-3	chr11	94979022	94979222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2795.0	NM_009161	20391.0	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	40.38	43.26	42.21	23.73	65.87	47.66	33.22	42.17	76.31	57.24	51.76	38.85
Merged-chr12-33315405-3	chr12	33315303	33315503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	12888.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	60.97	43.51	68.45	86.88	90.41	68.05	49.83	95.41	63.53	51.21	146.72	44.8
Merged-chr16-91880687-3	chr16	91880597	91880797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50933.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	41.59	35.47	55.33	61.54	52.37	68.99	54.48	83.75	61.96	43.18	116.07	39.16
Merged-chr10-86065160-3	chr10	86065072	86065272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-30682.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	51.28	63.39	75.87	59.53	32.73	45.15	49.49	47.5	106.21	61.76	123.11	66.41
Merged-chr9-22131341-3	chr9	22131287	22131487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	478.0	NM_001102404	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	19.38	12.07	7.99	14.48	20.05	27.59	23.25	18.62	27.93	33.14	23.62	14.41
Merged-chr18-49832602-3	chr18	49832516	49832716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-381.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	123.97	127.27	120.94	159.67	193.1	207.9	145.49	207.25	222.45	263.1	335.66	165.4
Merged-chr13-99006803-3	chr13	99006707	99006907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22242.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	21.8	36.22	42.78	29.36	56.46	29.16	47.83	39.31	52.91	55.23	59.29	45.74
Merged-chr11-70680108-3	chr11	70680026	70680226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190379, intron 8 of 20)	intron (NM_001190379, intron 8 of 20)	7979.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	82.78	66.15	99.83	72.8	86.32	93.44	68.43	70.79	101.49	101.43	126.12	44.48
Merged-chr4-41135376-3	chr4	41135223	41135423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-698.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	60.57	56.09	86.71	67.17	70.37	76.2	96.66	78.59	57.43	77.83	74.87	45.42
Merged-chr1-131084441-3	chr1	131084346	131084546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13397.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	67.43	44.52	73.02	48.26	74.05	119.16	38.86	56.07	80.05	88.37	100.5	42.6
Merged-chr18-39560933-3	chr18	39560815	39561015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73670.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	31.5	38.74	42.21	49.47	94.5	74.0	56.47	83.24	85.17	61.76	84.92	54.2
Merged-chr13-113614770-3	chr13	113614672	113614872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3792.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	17.36	9.06	19.4	23.73	40.5	37.63	23.25	44.83	32.26	29.12	49.75	16.6
Merged-chr12-12249706-3	chr12	12249580	12249780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12459.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	25.44	21.88	22.82	22.52	29.86	37.0	26.24	28.57	47.4	36.65	45.22	15.66
Merged-chr17-27909304-3	chr17	27909222	27909422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	16.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	38.76	29.93	33.66	22.52	29.86	38.26	19.6	36.5	41.89	51.72	32.66	31.33
Merged-chr11-117780816-3	chr11	117780726	117780926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145439)	promoter-TSS (NM_145439)	-134.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	72.68	49.05	84.43	59.53	90.0	132.95	111.28	92.02	90.87	106.95	136.17	51.38
Merged-chr7-142340726-3	chr7	142340622	142340822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31537.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	52.9	39.99	49.63	45.85	38.46	52.99	31.89	33.11	70.22	59.25	76.88	28.51
Merged-chr17-46248045-3	chr17	46247937	46248137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145353)	promoter-TSS (NM_145353)	8.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	62.59	52.32	47.92	58.32	79.78	96.58	31.89	62.13	99.33	68.29	102.51	55.76
Merged-chr16-58502079-3	chr16	58502003	58502203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	21323.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	136.08	95.33	179.12	190.24	192.69	150.51	211.59	220.77	149.88	132.56	233.65	102.12
Merged-chr4-59805808-3	chr4	59805693	59805893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172468, exon 1 of 9)	5' UTR (NM_172468, exon 1 of 9)	143.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	42.4	51.56	37.65	43.44	65.46	46.1	38.2	47.3	60.58	56.24	88.94	48.87
Merged-chr8-31187326-3	chr8	31187331	31187531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	100.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	13.73	21.13	23.39	17.7	12.68	30.73	35.21	15.81	23.6	15.06	27.13	17.23
Merged-chr10-42841751-1	chr10	42841651	42841851	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18761.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.81	1.26	3.42	2.82	4.5	10.35	3.65	11.5	3.93	5.02	2.51	4.7
Merged-chr10-39420996-3	chr10	39420905	39421105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	51206.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	115.49	74.2	140.33	111.41	99.0	130.13	125.89	163.37	125.29	120.0	188.43	88.03
Merged-chr9-103425117-3	chr9	103425032	103425232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001002896, exon 7 of 7)	3' UTR (NM_001002896, exon 7 of 7)	1554.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	36.75	37.73	37.65	30.16	30.68	40.14	33.55	31.96	48.98	31.63	32.16	43.23
Merged-chr7-45896824-3	chr7	45896720	45896920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	-109.0	NM_021482	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	195.84	163.49	176.27	140.37	169.78	238.0	129.55	143.94	204.56	269.63	242.2	125.62
Merged-chr17-83430783-3	chr17	83430649	83430849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 5 of 21)	intron (NM_001357886, intron 5 of 21)	79818.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	28.67	29.68	17.68	30.16	25.36	28.22	29.23	26.47	30.29	18.58	26.63	24.43
Merged-chr9-100643428-3	chr9	100643338	100643538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-10.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	259.24	290.26	275.53	254.99	283.51	337.72	255.11	289.21	400.46	453.4	589.41	281.63
Merged-chr3-95526803-3	chr3	95526698	95526898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267695)	promoter-TSS (NM_001267695)	12.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	36.75	39.99	42.21	38.61	40.5	40.76	23.25	32.64	35.6	44.19	47.23	28.51
Merged-chr5-138257203-3	chr5	138257110	138257310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081108, intron 2 of 3)	intron (NM_001081108, intron 2 of 3)	1728.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	27.86	16.35	19.4	20.11	26.59	41.71	37.2	45.14	16.72	16.57	19.09	23.81
Merged-chr10-13837886-3	chr10	13837789	13837989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31068.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	84.39	93.32	116.94	113.82	117.82	114.45	146.49	176.83	54.48	47.7	66.33	41.35
Merged-chr11-35838536-3	chr11	35838413	35838613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_170779)	TTS (NM_170779)	-3985.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	32.71	27.67	34.8	30.16	41.73	59.89	18.93	34.63	54.29	42.68	49.75	30.39
Merged-chr17-86977407-3	chr17	86977299	86977499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	HAL1ME|LINE|L1	14288.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	46.03	19.62	49.63	21.72	52.37	57.38	43.51	44.24	41.3	47.2	31.66	28.19
Merged-chr6-100272195-3	chr6	100272119	100272319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019743, intron 2 of 4)	intron (NM_019743, intron 2 of 4)	15139.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	28.27	27.42	26.24	36.2	16.36	35.43	27.24	48.59	38.55	25.11	47.23	33.83
Merged-chr13-45968355-3	chr13	45968271	45968471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3380.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	42.4	43.51	39.93	16.09	40.09	51.43	44.51	35.27	40.91	41.67	39.19	22.24
Merged-chr6-128200715-3	chr6	128200627	128200827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16924.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	223.3	242.98	227.04	273.09	331.37	343.05	233.85	267.17	334.57	290.72	457.26	202.06
Merged-chr13-100124875-3	chr13	100124781	100124981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011420)	promoter-TSS (NM_011420)	26.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	25.04	20.88	26.81	28.96	31.09	39.82	25.91	33.48	37.57	32.13	41.71	26.0
Merged-chr11-109363533-3	chr11	109363431	109363631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038097, exon 1 of 2)	non-coding (NR_038097, exon 1 of 2)	123.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	24.63	33.7	29.66	39.01	24.14	43.59	30.89	28.51	60.78	56.24	54.27	36.34
Merged-chr13-116972409-3	chr13	116972309	116972509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	PB1D9|SINE|Alu	53107.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	44.01	15.85	29.09	34.19	35.59	48.92	26.24	50.38	69.04	33.14	69.85	36.65
Merged-chr10-67715194-3	chr10	67715077	67715277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143218.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	29.48	24.9	41.64	34.19	39.27	40.76	49.49	44.55	44.84	46.19	56.28	22.87
Merged-chr2-91202914-3	chr2	91202823	91203023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007387)	promoter-TSS (NM_007387)	11.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	38.76	43.01	42.21	25.34	46.23	50.49	34.88	46.51	58.61	58.75	74.37	30.39
Merged-chr1-61146283-3	chr1	61146193	61146393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168379.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	27.46	39.99	40.5	49.87	29.86	33.24	41.19	55.85	40.12	19.58	64.32	43.86
Merged-chr8-4275950-3	chr8	4275840	4276040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	-35.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	63.4	65.15	61.04	58.72	75.28	91.88	39.86	74.24	129.03	128.04	119.59	57.95
Merged-chr1-14596205-3	chr1	14596141	14596341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	159725.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	43.21	26.41	35.94	43.84	60.14	56.76	41.85	82.29	57.63	53.22	67.33	26.63
Merged-chr4-35225966-4	chr4	35225877	35226077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-97.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	56.94	75.71	46.78	100.15	82.64	83.41	109.95	73.93	81.04	96.4	107.03	60.46
Merged-chr5-142949807-1	chr5	142949707	142949907	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10548.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.44	13.58	1.71	0.0	1.64	10.03	1.33	0.42	18.29	16.07	10.55	0.63
Merged-chr19-32760652-3	chr19	32760552	32760752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	3075.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	71.47	54.08	66.74	67.17	48.27	67.73	42.52	54.79	78.09	69.29	76.88	41.35
Merged-chr15-31224311-3	chr15	31224222	31224422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-63.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	98.12	72.69	118.08	87.68	139.1	141.11	105.63	142.57	155.38	160.17	244.71	77.06
Merged-chr19-18631905-3	chr19	18631823	18632023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	-93.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	151.83	127.27	132.92	156.86	163.23	181.25	119.91	154.68	157.74	156.15	239.18	103.38
Merged-chr15-80619997-3	chr15	80619881	80620081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289442, intron 1 of 7)	AmnSINE1|SINE|Deu	-3502.0	NM_010815	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	18.57	17.36	34.23	24.94	22.91	32.61	19.93	27.84	36.39	26.11	35.17	13.47
Merged-chr3-152193845-3	chr3	152193761	152193961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025926)	promoter-TSS (NM_025926)	-16.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	79.95	81.5	83.29	93.31	87.96	121.04	72.75	104.72	117.82	119.5	165.82	62.34
Merged-chr1-153752705-3	chr1	153752615	153752815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011882, intron 2 of 8)	intron (NM_011882, intron 2 of 8)	3289.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	30.28	24.15	39.36	28.96	31.5	19.76	29.23	41.61	35.21	29.12	40.7	31.95
Merged-chr9-36767800-3	chr9	36767705	36767905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-227.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	371.09	355.91	427.27	462.93	456.56	551.57	391.96	493.18	486.8	477.5	597.45	300.11
Merged-chr5-148548161-3	chr5	148548036	148548236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	3537.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	45.63	43.26	43.35	41.02	47.87	42.65	17.94	28.23	49.96	49.21	77.88	29.45
Merged-chr10-87830859-3	chr10	87830754	87830954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-27411.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	49.67	35.97	74.73	74.0	64.23	86.55	92.01	89.89	76.51	76.82	86.93	44.48
Merged-chr13-37537480-1	chr13	37537380	37537580	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	192135.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	1.25	0.66	0.36	46.42	47.7	51.76	35.4
Merged-chr10-49151697-1	chr10	49151597	49151797	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358866, intron 14 of 16)	ERVB4_3-LTR_MM|LTR|ERVK	636240.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	1.01	0.0	2.41	38.05	65.85	51.82	42.7	2.56	0.5	2.01	2.19
Merged-chr2-129602076-3	chr2	129601960	129602160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	6598.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	23.82	17.61	17.11	20.11	19.64	20.07	24.91	18.53	32.26	31.63	42.71	21.93
Merged-chr3-21129029-3	chr3	21128934	21129134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-761857.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	28.27	28.42	26.81	29.76	31.09	15.05	19.27	34.57	36.58	37.66	32.66	26.94
Merged-chr1-86501742-3	chr1	86501631	86501831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24826.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	33.11	30.69	19.97	20.51	33.96	45.47	8.3	20.61	32.45	35.15	39.19	28.51
Merged-chr2-166448479-1	chr2	166448379	166448579	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015558, exon 1 of 3)	non-coding (NR_015558, exon 1 of 3)	1028.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	7.67	4.78	11.98	3.62	4.09	16.31	7.64	16.4	14.16	17.57	16.08	11.28
Merged-chr9-44234210-3	chr9	44234134	44234334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-188.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	128.81	111.93	96.41	95.32	128.46	148.01	59.46	96.34	157.35	175.23	183.91	70.48
Merged-chr8-108911061-3	chr8	108910966	108911166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-25794.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	87.62	64.64	136.34	114.22	105.96	85.92	86.03	136.65	65.5	59.75	90.45	52.0
Merged-chr17-35219794-3	chr17	35219727	35219927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010909)	TTS (NM_010909)	-14476.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	34.32	34.71	19.97	14.88	31.5	52.05	29.9	21.39	45.04	56.74	39.19	17.54
Merged-chr1-59670798-3	chr1	59670698	59670898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009460)	promoter-TSS (NM_009460)	36.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	39.98	43.26	26.81	28.15	43.77	52.05	27.24	32.78	59.79	63.77	60.8	37.91
Merged-chr5-139702402-3	chr5	139702318	139702518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33915.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	52.09	35.97	79.86	59.53	64.23	57.38	77.4	82.71	63.73	47.7	72.36	56.07
Merged-chr8-25597073-3	chr8	25596975	25597175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173012, intron 1 of 10)	CpG	412.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	74.3	66.4	73.59	62.34	65.05	87.49	76.73	78.73	66.48	72.3	96.98	37.28
Merged-chr5-90903241-3	chr5	90903128	90903328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-671.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	60.17	55.34	50.2	39.42	74.46	89.68	62.12	58.85	51.93	69.79	68.84	19.11
Merged-chr17-56266518-3	chr17	56266439	56266639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9746.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	83.59	73.95	57.05	48.67	66.68	105.99	48.83	70.57	96.97	103.43	103.51	61.71
Merged-chr13-9764559-3	chr13	9764469	9764669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-99.0	NM_001347472	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	25.04	34.96	25.67	34.99	32.73	23.52	46.17	33.22	42.88	40.17	36.68	13.78
Merged-chr2-4567174-3	chr2	4567069	4567269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	7415.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	28.67	39.49	38.22	37.4	44.59	34.18	34.21	39.11	43.47	52.72	52.76	32.27
Merged-chr19-9931272-3	chr19	9931175	9931375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31742.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	107.01	103.63	126.07	89.69	133.37	135.78	123.9	104.33	133.94	135.07	150.24	88.65
Merged-chr5-66151605-3	chr5	66151491	66151691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	363.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	27.05	33.7	25.67	26.14	25.77	35.43	29.9	24.95	32.06	41.17	35.68	23.81
Merged-chr6-86684504-3	chr6	86684410	86684610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025665)	promoter-TSS (NM_025665)	-19.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	46.44	42.51	34.23	43.44	57.27	61.77	35.21	47.07	37.96	32.64	53.77	25.06
Merged-chr7-34313465-3	chr7	34313366	34313566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-27857.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	47.24	39.99	47.35	48.67	45.0	56.44	60.46	55.77	47.8	64.27	41.2	36.65
Merged-chr10-128035486-3	chr10	128035372	128035572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001113199, exon 1 of 9)	5' UTR (NM_001113199, exon 1 of 9)	126.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	124.77	133.56	121.51	138.36	144.41	163.69	124.56	132.93	143.78	137.58	202.5	95.55
Merged-chr11-110967800-3	chr11	110967681	110967881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-252.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	30.69	19.12	20.54	33.38	19.23	19.44	17.94	26.16	39.93	30.63	44.22	19.42
Merged-chr7-45333679-3	chr7	45333583	45333783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175130)	promoter-TSS (NM_175130)	97.0	NM_175130	68667.0	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	45.23	43.01	34.8	43.84	33.14	61.46	37.54	36.81	38.75	50.71	29.14	28.51
Merged-chr4-141547122-3	chr4	141547043	141547243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	981.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	26.25	13.83	15.97	17.29	33.96	48.29	41.52	49.51	45.63	25.11	63.31	26.31
Merged-chr1-106408128-3	chr1	106408023	106408223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138508.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	56.13	46.53	70.74	65.56	47.46	61.15	47.17	73.99	83.59	68.29	119.09	53.26
Merged-chr12-3804131-3	chr12	3804044	3804244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2836.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	25.04	44.77	52.48	33.78	33.55	46.72	14.95	25.65	39.73	30.63	54.77	26.31
Merged-chr11-110698626-3	chr11	110698522	110698722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	219282.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	33.11	26.41	46.78	34.99	80.18	78.39	46.17	46.12	69.43	70.8	80.9	57.33
Merged-chr7-6155188-3	chr7	6155092	6155292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	CpG	779.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	36.34	36.47	46.21	36.6	29.86	35.12	69.09	45.11	45.43	40.67	48.74	44.8
Merged-chr7-82867133-3	chr7	82867048	82867248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-185.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	76.72	90.3	100.4	131.52	62.18	61.46	44.84	108.08	130.21	95.9	192.45	79.88
Merged-chr19-28658697-3	chr19	28658560	28658760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	L1MC4|LINE|L1	-19564.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	30.28	20.37	24.53	35.8	49.09	37.63	47.83	56.19	18.29	35.15	18.59	18.8
Merged-chr7-136894485-3	chr7	136894382	136894582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-129.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	123.97	113.69	139.19	155.65	178.37	189.71	126.22	202.85	190.98	221.93	307.02	118.1
Merged-chr13-102690241-3	chr13	102690148	102690348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3299.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	28.67	17.61	25.67	26.55	23.73	47.98	32.88	22.99	40.52	35.15	66.33	33.83
Merged-chr5-134552424-3	chr5	134552334	134552534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009990)	promoter-TSS (NM_009990)	0.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	105.79	89.8	81.0	87.28	74.87	103.48	53.15	58.71	106.8	106.95	120.09	57.33
Merged-chr18-31634253-3	chr18	31634139	31634339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357554)	promoter-TSS (NM_001357554)	-129.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	96.91	90.3	119.8	108.59	282.69	293.5	194.65	330.7	164.63	143.1	240.69	104.63
Merged-chr2-91727154-3	chr2	91727003	91727203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3035.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	12.92	22.39	14.26	16.89	14.73	21.01	7.31	15.56	13.37	13.56	15.07	13.16
Merged-chr7-145030838-3	chr7	145030744	145030944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90919.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	35.94	49.55	45.07	57.51	48.27	54.56	49.16	59.58	53.11	59.75	42.71	52.94
Merged-chr7-6383286-3	chr7	6383183	6383383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-35.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	71.88	56.34	57.05	82.05	75.68	85.61	74.41	110.75	107.79	111.47	144.21	51.69
Merged-chr9-123480758-3	chr9	123480649	123480849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	2048.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	60.97	57.85	64.46	62.74	74.87	92.82	47.5	53.61	69.63	66.78	96.48	51.06
Merged-chr10-37232088-3	chr10	37231981	37232181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93155.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	140.12	147.4	164.86	150.02	128.05	159.61	158.45	158.16	155.38	183.27	241.19	143.79
Merged-chr7-100607531-3	chr7	100607433	100607633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163663)	promoter-TSS (NM_001163663)	-53.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	131.23	118.47	109.53	106.58	108.41	151.14	111.28	108.51	153.02	150.63	166.32	97.74
Merged-chr4-43460840-3	chr4	43460747	43460947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-6221.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	29.88	15.59	34.23	46.25	21.68	19.44	19.27	33.84	31.27	31.13	37.69	23.81
Merged-chr16-4678267-3	chr16	4678146	4678346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1474.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	44.42	37.73	69.03	54.7	52.77	50.49	41.52	64.4	66.68	77.32	86.43	44.17
Merged-chr16-95902395-3	chr16	95902288	95902488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	-3675.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	36.34	21.13	36.51	20.91	16.36	43.9	21.59	16.49	50.55	59.75	60.3	23.81
Merged-chr3-94413151-3	chr3	94413032	94413232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357713)	promoter-TSS (NM_001357713)	-112.0	NM_001357713	72634.0	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	142.14	125.76	140.9	131.92	181.64	183.44	144.83	208.51	223.44	210.88	272.85	134.08
Merged-chr15-83555710-3	chr15	83555600	83555800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001030014)	promoter-TSS (NM_001030014)	11.0	NM_001030014	223722.0	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	27.05	28.93	27.95	19.71	22.09	18.81	29.23	20.44	19.47	24.6	26.63	22.56
Merged-chr2-90583751-3	chr2	90583639	90583839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3092.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	61.78	44.77	76.44	53.09	69.14	50.8	54.14	73.91	71.4	44.19	76.88	52.63
Merged-chr1-143999549-3	chr1	143999458	143999658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	4591.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	48.46	41.0	39.36	43.84	43.77	38.88	33.22	47.69	41.3	45.69	34.67	35.4
Merged-chr5-111044675-3	chr5	111044572	111044772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	40528.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	15.34	21.38	24.53	19.31	31.5	10.66	23.25	31.68	29.5	31.63	26.63	27.57
Merged-chr9-110645360-3	chr9	110645277	110645477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8784.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	13.33	20.63	22.82	24.94	38.46	30.1	15.94	19.96	40.91	49.21	32.16	28.19
Merged-chr12-76943699-3	chr12	76943611	76943811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	18537.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	22.21	24.4	31.95	36.2	18.41	28.22	17.27	21.76	36.78	36.15	41.71	27.88
Merged-chr5-98018335-3	chr5	98018240	98018440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	12622.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	99.74	81.24	126.64	126.69	87.14	93.76	69.42	118.4	87.72	93.39	99.99	79.57
Merged-chr4-59549444-3	chr4	59549342	59549542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178164)	promoter-TSS (NM_178164)	-78.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	157.88	168.78	186.54	152.84	166.51	215.11	129.88	158.19	201.21	229.46	224.61	113.72
Merged-chr11-87987142-2	chr11	87987057	87987257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	376.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	17.36	20.37	18.25	20.91	15.14	10.66	25.91	7.93	13.37	11.05	20.1	10.65
Merged-chr2-130424297-3	chr2	130424194	130424394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	-6.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	45.23	39.99	33.66	39.42	49.91	43.27	25.24	34.68	61.76	71.8	49.24	36.97
Merged-chr1-167247187-3	chr1	167247072	167247272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	37955.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	39.57	20.63	25.67	42.23	59.32	40.14	37.2	55.54	29.11	27.62	47.74	24.43
Merged-chr2-167777951-3	chr2	167777826	167778026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86749.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	94.89	79.48	103.82	112.21	116.19	157.41	110.28	115.43	124.11	166.2	181.9	78.63
Merged-chr3-79128023-3	chr3	79127926	79128126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16861.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	57.74	57.35	51.34	57.11	44.18	53.62	27.9	45.22	83.99	62.76	69.85	58.27
Merged-chr14-31376556-3	chr14	31376460	31376660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39922.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	20.59	44.27	52.48	49.87	39.68	45.47	42.52	73.88	64.51	59.75	92.96	64.53
Merged-chr10-94381197-3	chr10	94381103	94381303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	60.17	50.05	55.9	39.42	70.77	98.15	63.78	71.58	72.38	67.78	79.89	32.27
Merged-chr5-31882463-3	chr5	31882355	31882555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	184405.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	17.36	18.36	36.51	39.82	33.96	28.54	17.94	32.97	26.95	21.59	23.11	19.74
Merged-chr9-31386118-3	chr9	31385993	31386193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-99.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	62.18	49.05	55.33	59.53	93.68	91.88	52.82	87.95	91.46	88.87	102.0	43.54
Merged-chr2-168563409-3	chr2	168563288	168563488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	26977.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	39.98	51.31	46.78	48.67	33.96	47.35	20.93	42.42	23.01	21.09	30.65	19.42
Merged-chr17-57334966-3	chr17	57334846	57335046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23740.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	24.63	28.67	24.53	16.89	24.96	36.06	12.29	25.93	36.39	38.16	31.66	17.54
Merged-chr1-134414698-3	chr1	134414589	134414789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-689.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	25.04	20.63	31.95	36.6	27.41	22.26	16.28	38.47	35.6	17.57	18.09	21.62
Merged-chr7-132551934-3	chr7	132551851	132552051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24447.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	59.36	70.68	42.21	71.59	62.59	74.94	30.23	77.69	59.4	69.79	99.99	45.11
Merged-chr6-57542200-3	chr6	57542096	57542296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-6770.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	26.25	18.86	22.82	31.77	27.0	20.38	21.26	26.92	21.83	35.15	24.62	15.66
Merged-chr5-32122544-3	chr5	32122462	32122662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13910.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	59.76	36.97	38.22	37.81	78.96	85.92	67.43	60.08	76.12	67.78	69.34	27.57
Merged-chr7-25106005-3	chr7	25105902	25106102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-8827.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	23.42	24.9	27.38	14.48	19.23	19.44	17.61	21.14	39.14	25.11	31.66	15.98
Merged-chr11-69766210-5	chr11	69766070	69766270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029348, intron 1 of 3)	CpG	258.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	24.63	11.82	23.39	22.52	18.0	12.86	16.28	19.99	25.77	30.13	26.13	25.37
Merged-chr14-56886441-3	chr14	56886362	56886562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029498)	promoter-TSS (NM_029498)	-141.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	81.16	77.22	99.83	113.42	104.32	95.64	92.01	32.36	105.62	114.98	127.13	78.94
Merged-chr14-70767694-3	chr14	70767593	70767793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	-1065.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	17.77	18.61	21.11	23.73	27.0	24.46	12.95	31.04	30.49	41.17	44.22	20.05
Merged-chr10-95501915-3	chr10	95501793	95501993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	56.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	18.57	37.98	26.24	30.97	29.86	42.02	29.23	36.59	33.44	29.62	41.2	26.63
Merged-chr11-20542969-3	chr11	20542895	20543095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-258.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	261.66	302.59	312.61	351.52	351.83	459.7	385.65	420.17	380.59	438.84	535.14	260.64
Merged-chr8-94584593-3	chr8	94584471	94584671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028221, intron 5 of 7)	intron (NM_028221, intron 5 of 7)	17155.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	26.65	26.91	29.66	35.8	33.14	33.24	21.92	34.49	41.89	14.06	40.2	21.62
Merged-chr6-113419322-3	chr6	113419204	113419404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346511)	promoter-TSS (NM_001346511)	36.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	30.28	31.19	23.96	24.94	37.23	29.79	25.91	31.74	47.6	23.1	36.18	21.3
Merged-chr11-58928503-3	chr11	58928411	58928611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10395.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	52.9	49.05	67.88	53.49	60.55	58.01	48.5	40.09	100.11	73.81	96.98	46.99
Merged-chr8-59234646-1	chr8	59234546	59234746	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	322891.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	3.23	3.52	6.28	8.04	15.55	4.39	12.95	15.11	7.28	7.03	16.58	5.33
Merged-chr8-35136790-1	chr8	35136690	35136890	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-171100.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.62	1.01	0.0	0.8	3.27	2.51	0.0	3.25	30.88	20.08	39.7	25.37
Merged-chr8-71628016-3	chr8	71627933	71628133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	3073.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	24.63	24.15	38.79	19.71	31.91	46.1	35.54	36.79	58.42	33.64	28.14	14.1
Merged-chr10-19099863-4	chr10	19099724	19099924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41925.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	18.17	14.59	11.98	24.53	29.46	23.83	22.26	30.11	17.7	29.12	38.19	13.47
Merged-chr19-53944123-3	chr19	53944044	53944244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355242)	promoter-TSS (NM_001355242)	-162.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	95.3	118.97	132.92	120.26	137.05	148.95	131.21	150.39	149.68	163.18	232.15	76.12
Merged-chr10-122097363-3	chr10	122097266	122097466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-264.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	207.95	212.54	219.63	269.47	247.51	278.45	235.51	267.81	303.88	272.14	426.11	172.61
Merged-chr1-13374355-3	chr1	13374186	13374386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008678)	promoter-TSS (NM_008678)	-203.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	15.34	22.64	22.82	14.48	28.23	21.64	24.91	20.97	16.72	27.62	24.12	17.86
Merged-chr2-90479962-3	chr2	90479850	90480050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-776.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	25.84	11.32	31.38	17.29	36.0	31.67	29.23	38.86	23.21	33.14	30.65	17.86
Merged-chr11-49204121-3	chr11	49204025	49204225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	625.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	36.75	23.64	17.68	26.55	24.55	38.26	16.94	20.36	34.81	31.63	31.15	27.57
Merged-chr1-140183361-3	chr1	140183251	140183451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009888)	promoter-TSS (NM_009888)	60.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	66.63	41.5	73.59	98.94	101.87	75.26	119.58	140.24	69.63	83.85	121.1	62.34
Merged-chr11-51931965-3	chr11	51931857	51932057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-35674.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	125.58	101.62	157.45	131.52	133.37	153.65	90.35	125.02	130.6	126.53	214.06	111.21
Merged-chr16-58499855-3	chr16	58499761	58499961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	23565.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	15.75	16.85	24.53	20.11	34.36	40.14	21.59	41.5	58.02	44.69	67.84	34.77
Merged-chr9-57652554-3	chr9	57652449	57652649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	1082.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	60.57	48.04	102.68	77.62	78.14	77.14	90.02	116.13	95.98	63.27	118.08	90.53
Merged-chr6-29694163-3	chr6	29694060	29694260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146173)	promoter-TSS (NM_146173)	-54.0	NM_001301407	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	52.09	38.74	58.76	46.25	50.32	63.34	30.23	66.76	60.78	41.17	72.36	32.58
Merged-chr13-112760685-3	chr13	112760599	112760799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40078.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	39.17	23.9	21.68	28.96	55.23	49.86	31.22	59.36	59.6	54.23	69.34	51.38
Merged-chr5-65391473-3	chr5	65391371	65391571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011292)	promoter-TSS (NM_011292)	-26.0	NM_024471	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	79.55	113.69	103.25	89.29	96.14	109.44	70.75	71.08	94.61	140.09	102.0	91.47
Merged-chr8-25087744-3	chr8	25087648	25087848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	MIR3|SINE|MIR	14063.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	122.35	96.08	136.34	86.88	101.46	128.25	75.07	100.21	131.58	116.49	123.11	72.99
Merged-chr2-44920674-3	chr2	44920600	44920800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59078.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	51.69	20.63	34.23	36.6	71.18	72.75	60.79	67.37	77.1	91.89	92.96	53.88
Merged-chr3-87525594-3	chr3	87525497	87525697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012051)	promoter-TSS (NM_012051)	19.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	63.4	39.99	58.19	56.31	54.82	67.42	36.21	52.63	57.24	48.2	74.87	50.12
Merged-chr17-35516910-3	chr17	35516798	35516998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-74.0	NM_025674	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	76.72	45.02	52.48	49.87	42.55	85.61	29.9	49.43	61.56	73.31	56.28	37.59
Merged-chr9-86464773-3	chr9	86464647	86464847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027394, exon 1 of 10)	exon (NM_027394, exon 1 of 10)	169.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	65.82	84.76	54.76	78.83	73.64	85.29	117.59	86.3	76.31	93.39	88.94	52.32
Merged-chr5-114926988-3	chr5	114926888	114927088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3748.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	61.38	51.06	50.77	34.19	50.32	105.36	51.15	73.96	49.17	57.74	43.21	30.07
Merged-chr1-180417340-3	chr1	180417235	180417435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	66169.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	63.4	89.54	86.14	73.2	77.32	69.3	50.49	86.94	80.25	81.84	105.02	54.2
Merged-chr1-138159136-3	chr1	138159061	138159261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	15965.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	76.32	54.08	69.03	29.36	71.18	88.11	43.18	59.64	83.4	69.29	63.31	41.66
Merged-chr4-103025545-3	chr4	103025439	103025639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290648, intron 2 of 2)	intron (NM_001290648, intron 2 of 2)	1189.0	NM_011831	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	71.88	49.55	70.74	61.13	69.55	77.77	27.24	50.1	45.43	47.7	39.19	21.93
Merged-chr12-25096197-3	chr12	25096118	25096318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010496)	promoter-TSS (NM_010496)	-126.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	214.82	192.42	195.1	210.75	201.28	209.78	187.34	230.55	284.61	285.2	323.6	176.06
Merged-chr10-117449944-3	chr10	117449843	117450043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2508.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	19.38	11.07	23.39	18.1	19.23	21.95	17.61	28.65	26.75	18.58	37.18	22.24
Merged-chr12-110601386-3	chr12	110601274	110601474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030238)	promoter-TSS (NM_030238)	-21.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	80.36	81.5	90.13	66.77	90.82	122.29	52.15	86.41	118.21	105.44	126.12	66.1
Merged-chr17-64590676-3	chr17	64590572	64590772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10977.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	29.48	25.66	62.75	42.23	54.0	42.96	72.75	96.79	87.13	42.18	69.85	27.88
Merged-chr16-91729226-3	chr16	91729124	91729324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	-147.0	NM_001110275	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	83.18	59.36	54.76	75.21	82.23	97.83	58.79	75.95	118.41	92.39	94.97	73.62
Merged-chr7-140997999-3	chr7	140997904	140998104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12740.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	30.28	29.18	38.22	26.14	42.55	44.53	27.24	32.72	36.78	28.62	58.29	35.09
Merged-chr3-30992350-3	chr3	30992249	30992449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3422.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	21.8	18.11	33.66	14.88	46.64	25.71	24.25	44.27	33.04	22.59	31.66	24.12
Merged-chr13-105117746-1	chr13	105117646	105117846	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025751, intron 5 of 7)	L1_Mur2|LINE|L1	35624.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	4.44	2.52	0.0	1.21	3.27	1.57	5.98	6.93	1.57	1.51	5.02	1.25
Merged-chr17-57358570-3	chr17	57358464	57358664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-122.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	103.78	75.71	94.7	50.68	117.0	135.15	76.07	70.29	147.32	143.1	110.55	51.69
Merged-chr3-126829934-2	chr3	126829842	126830042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	113444.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	45.23	38.48	47.35	41.02	57.68	45.78	43.85	66.48	5.31	5.02	3.52	3.13
Merged-chr2-144047109-3	chr2	144047008	144047208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	14006.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	33.11	29.93	57.62	51.08	44.59	62.4	39.2	49.68	50.94	36.15	76.38	31.64
Merged-chr6-120463238-3	chr6	120463134	120463334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008359)	promoter-TSS (NM_008359)	37.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	19.38	27.92	19.4	30.57	25.36	41.08	21.92	23.27	32.65	34.14	28.64	21.93
Merged-chr12-99993693-3	chr12	99993596	99993796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	MIR|SINE|MIR	29197.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	88.03	70.93	99.26	95.32	107.59	100.03	110.61	129.14	68.25	54.23	118.08	64.85
Merged-chr7-35754487-3	chr7	35754372	35754572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178704)	promoter-TSS (NM_178704)	-18.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	58.15	47.29	54.19	61.13	64.64	65.54	72.41	71.78	59.99	69.79	80.9	36.65
Merged-chr10-13499641-4	chr10	13499541	13499741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1387.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	29.88	19.62	27.95	32.98	23.32	32.3	44.18	23.47	16.52	17.07	40.7	20.99
Merged-chr2-27010004-3	chr2	27009919	27010119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029862)	promoter-TSS (NM_029862)	93.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	56.53	60.87	57.05	68.37	62.59	75.57	65.44	46.85	61.96	71.8	66.83	48.24
Merged-chr11-23830477-3	chr11	23830385	23830585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-59515.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	30.69	22.13	47.92	27.75	23.32	32.61	22.26	17.92	30.88	18.08	22.61	13.47
Merged-chr11-74828586-3	chr11	74828492	74828692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2332.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	37.55	25.4	29.66	33.38	29.86	38.57	24.25	31.57	36.58	23.1	36.18	18.48
Merged-chrX-134751430-3	chrX	134751304	134751504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007578)	promoter-TSS (NM_001007578)	15.0	NM_001007578	278097.0	Mm.113272	NM_001007578	ENSMUSG00000050394	Armcx6	AW060994	armadillo repeat containing, X-linked 6	protein-coding	55.72	71.43	54.76	60.33	65.87	72.12	45.18	83.66	81.23	58.24	78.39	39.16
Merged-chr15-33211563-3	chr15	33211459	33211659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	128430.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	28.67	43.01	71.88	53.09	67.09	57.38	65.44	75.76	78.68	53.73	83.91	50.12
Merged-chr4-40287621-3	chr4	40287525	40287725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8204.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	25.84	27.92	23.39	24.53	18.82	35.75	19.6	24.76	35.4	32.64	30.15	24.12
Merged-chr15-103462744-3	chr15	103462627	103462827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153505, exon 7 of 31)	exon (NM_153505, exon 7 of 31)	8902.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	37.15	26.41	62.75	43.04	42.96	45.15	32.88	46.88	32.45	37.66	45.22	23.81
Merged-chr11-22818630-3	chr11	22818544	22818744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41091.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	27.46	23.9	42.21	45.85	30.27	50.17	34.88	60.87	49.96	35.65	38.69	33.21
Merged-chr14-46886107-3	chr14	46886004	46886204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	3139.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	12.52	13.83	17.68	30.57	27.41	20.7	20.59	26.44	16.33	17.57	30.15	16.29
Merged-chr3-149393560-3	chr3	149393466	149393666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118829.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	20.59	18.61	23.39	31.77	27.0	26.03	20.59	37.96	45.43	44.19	34.67	28.82
Merged-chr7-128622668-3	chr7	128622567	128622767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	11302.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	31.5	14.59	30.23	18.1	29.46	19.44	20.59	27.9	23.8	23.6	24.62	16.29
Merged-chr3-9004561-4	chr3	9004425	9004625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357072)	promoter-TSS (NM_001357072)	198.0	NM_009412	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	46.44	29.43	47.92	35.8	82.64	65.85	50.82	44.66	84.38	98.41	123.61	77.69
Merged-chr16-23274536-1	chr16	23274436	23274636	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-15934.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.23	0.25	0.0	0.8	0.82	2.82	1.33	2.41	0.79	3.51	0.5	2.19
Merged-chr5-113735703-3	chr5	113735611	113735811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010825)	promoter-TSS (NM_001010825)	-71.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	103.37	90.55	102.68	88.89	143.6	122.92	82.71	93.11	141.03	122.51	155.77	90.85
Merged-chr6-38354477-3	chr6	38354376	38354576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347122, exon 1 of 13)	5' UTR (NM_001347122, exon 1 of 13)	127.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	188.98	207.26	115.8	117.84	142.37	243.96	156.78	113.69	172.3	218.42	189.94	90.53
Merged-chr13-117028463-3	chr13	117028360	117028560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2944.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	59.36	58.86	76.44	58.72	71.18	57.7	44.51	98.94	52.52	53.22	70.35	33.83
Merged-chr2-121506640-3	chr2	121506548	121506748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030234)	promoter-TSS (NM_030234)	8.0	NM_026220	67532.0	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	32.3	31.94	29.66	39.82	40.5	28.22	15.28	33.22	38.94	33.64	48.24	29.45
Merged-chr13-47190174-3	chr13	47190087	47190287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3816.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	64.2	70.93	91.27	98.14	45.41	66.48	69.09	87.7	43.07	42.18	52.26	33.52
Merged-chr11-106066037-3	chr11	106065933	106066133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027346)	promoter-TSS (NM_027346)	-74.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	45.23	53.32	59.9	51.88	38.46	63.97	31.22	45.25	64.71	65.27	76.38	49.5
Merged-chr15-6708342-3	chr15	6708249	6708449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-32.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	36.75	17.61	23.39	16.49	35.59	26.34	18.27	31.91	59.79	36.65	39.7	26.94
Merged-chr4-84079792-2	chr4	84079687	84079887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34908.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	23.02	17.1	23.96	37.81	27.0	28.22	32.55	43.37	0.0	0.0	0.0	0.0
Merged-chr1-191253827-3	chr1	191253728	191253928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29374.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	18.17	10.06	26.81	25.74	41.73	29.16	36.87	47.05	15.93	20.08	23.62	27.88
Merged-chr15-76069825-3	chr15	76069734	76069934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134089)	promoter-TSS (NM_134089)	-50.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	81.57	69.92	57.62	45.45	73.64	85.61	39.86	67.68	106.8	107.45	98.49	71.42
Merged-chr2-14323376-3	chr2	14323286	14323486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 25 of 29)	RLTR17|LTR|ERVK	62383.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	43.61	55.08	43.35	45.05	52.37	69.93	53.15	59.55	71.0	51.72	79.39	39.78
Merged-chr17-31559077-3	chr17	31558984	31559184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-5689.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	16.56	23.14	30.8	29.76	33.14	35.43	18.27	26.47	30.09	35.65	22.61	20.36
Merged-chr10-19941362-3	chr10	19941266	19941466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6840.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	68.24	49.3	72.45	71.59	72.82	67.73	37.54	62.47	42.68	36.65	48.74	25.37
Merged-chr13-49252312-3	chr13	49252206	49252406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3600.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	16.96	12.58	24.53	18.5	33.96	39.51	34.55	49.04	29.9	32.13	38.19	18.48
Merged-chr17-29500091-1	chr17	29499991	29500191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9046.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.23	13.58	8.56	4.42	2.45	10.03	2.66	0.36	4.72	7.03	5.53	2.19
Merged-chr12-100529408-3	chr12	100529303	100529503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8581.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	21.8	15.59	24.53	17.7	32.73	46.41	25.24	28.51	38.16	38.66	28.64	24.12
Merged-chr10-8881913-3	chr10	8881816	8882016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4154.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	143.35	140.86	150.6	151.63	172.23	177.17	175.72	160.71	205.34	192.31	184.91	119.67
Merged-chr8-95335906-3	chr8	95335791	95335991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	3607.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	24.23	13.83	31.38	19.71	18.41	35.43	11.29	27.25	38.16	34.65	27.13	16.6
Merged-chr4-19942410-3	chr4	19942299	19942499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19833.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	56.53	31.19	89.56	94.11	70.77	62.71	91.68	132.95	54.09	52.22	72.86	56.07
Merged-chr11-72207517-3	chr11	72207435	72207635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	-19.0	NM_026559	52700.0	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	25.84	13.58	7.99	10.86	31.91	21.01	18.6	28.01	29.11	37.16	28.14	15.35
Merged-chr17-71183456-3	chr17	71183325	71183525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	-107.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	69.45	56.34	57.05	51.08	85.5	65.85	53.48	68.89	87.72	75.32	77.88	49.18
Merged-chr1-75168843-6	chr1	75168715	75168915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026846)	promoter-TSS (NM_026846)	80.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	54.11	49.8	33.66	41.43	44.18	58.95	51.15	41.52	38.55	50.21	52.76	38.22
Merged-chr7-140941850-3	chr7	140941738	140941938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153832, intron 1 of 11)	intron (NR_153832, intron 1 of 11)	447.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	83.59	58.61	70.17	48.26	90.0	112.26	66.77	55.35	103.46	118.5	138.69	64.22
Merged-chr13-45288641-3	chr13	45288541	45288741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	37.96	39.49	33.66	15.28	23.73	54.25	22.59	19.51	38.35	24.1	29.65	14.72
Merged-chr11-22982280-3	chr11	22982192	22982392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144514)	promoter-TSS (NM_144514)	-8.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	86.41	101.62	106.68	88.08	86.32	121.98	69.09	124.57	119.0	159.67	115.57	73.93
Merged-chr13-49307755-3	chr13	49307679	49307879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1429.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	17.77	21.63	21.68	15.69	22.09	14.74	16.61	13.6	23.41	27.62	27.64	24.43
Merged-chr7-5080150-3	chr7	5080031	5080231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252454)	promoter-TSS (NM_001252454)	-104.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	103.37	103.38	102.11	84.86	102.68	101.28	69.42	105.25	120.37	121.01	162.3	93.35
Merged-chr15-79433149-3	chr15	79433068	79433268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	8650.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	20.19	13.58	33.09	33.38	28.23	21.32	22.92	37.46	16.13	32.64	24.62	23.81
Merged-chrX-20418632-3	chrX	20418528	20418728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	-7060.0	NM_199317	382207.0	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	30.69	17.36	24.53	18.1	19.23	48.29	25.91	38.55	32.65	49.21	34.17	25.69
Merged-chr2-150828893-1	chr2	150828793	150828993	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 18 of 19)	intron (NM_153781, intron 18 of 19)	13677.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	1.26	6.85	2.01	2.05	1.25	1.0	1.71	3.93	3.01	2.51	2.82
Merged-chr19-31082818-3	chr19	31082722	31082922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-19.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	236.62	303.09	346.27	305.27	246.28	327.06	229.53	340.85	349.71	286.7	433.14	204.25
Merged-chr12-79006824-3	chr12	79006729	79006929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178745, intron 1 of 2)	CpG	448.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	16.15	16.35	18.25	19.71	22.09	19.13	9.97	15.56	42.88	34.65	39.19	15.66
Merged-chr1-191396658-2	chr1	191396555	191396755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_144880, exon 1 of 13)	5' UTR (NM_144880, exon 1 of 13)	386.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	14.94	23.64	15.4	11.66	13.5	15.68	13.95	10.71	29.31	21.59	26.63	15.98
Merged-chr17-34151186-1	chr17	34151086	34151286	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010388)	TTS (NM_010388)	-2005.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.0	0.5	0.57	0.8	18.82	22.89	23.92	9.56	1.18	1.0	2.01	0.0
Merged-chr5-8623088-3	chr5	8622970	8623170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198620)	promoter-TSS (NM_198620)	-118.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	30.28	10.56	25.67	30.97	31.91	37.32	53.15	56.22	24.98	14.56	21.61	17.54
Merged-chr18-4032548-3	chr18	4032449	4032649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-133283.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	33.11	17.36	14.83	18.5	42.96	22.58	23.25	26.92	43.27	47.7	39.19	28.19
Merged-chr3-152346484-3	chr3	152346414	152346614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252486)	promoter-TSS (NM_001252486)	36.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	123.16	105.64	114.66	104.97	118.64	131.07	93.01	148.77	133.55	125.02	148.23	69.23
Merged-chr15-102625822-3	chr15	102625712	102625912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310070)	promoter-TSS (NM_001310070)	-348.0	NM_001310066	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	58.15	48.29	50.77	39.01	63.0	52.05	28.23	61.99	65.5	47.2	55.27	49.18
Merged-chr1-39576772-3	chr1	39576650	39576850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033135, intron 1 of 6)	CpG	597.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	25.04	28.42	18.83	28.96	31.5	42.65	29.9	35.58	69.43	41.17	84.42	36.03
Merged-chr10-121496785-3	chr10	121496682	121496882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-20532.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	99.33	58.35	138.05	148.81	147.28	104.42	130.21	156.65	127.26	114.98	186.42	102.75
Merged-chr9-108460564-3	chr9	108460469	108460669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	51.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	17.77	22.13	6.85	12.47	13.5	29.79	14.95	16.35	34.42	24.1	24.12	17.54
Merged-chr6-136809296-3	chr6	136809186	136809386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1038.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	56.13	39.74	42.21	44.24	45.82	70.87	51.82	75.93	64.12	64.27	69.34	49.81
Merged-chr11-88107545-3	chr11	88107417	88107617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	8371.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	34.73	48.8	44.5	51.48	22.91	44.84	32.55	29.92	45.63	40.17	55.78	30.7
Merged-chr2-181497104-3	chr2	181496999	181497199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-43.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	111.04	102.37	96.98	125.08	118.64	129.82	92.01	135.45	142.01	146.61	200.99	119.98
Merged-chr12-21286248-3	chr12	21286127	21286327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	57.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	120.73	113.94	131.21	125.49	135.0	180.3	104.97	138.9	148.7	137.58	148.23	94.61
Merged-chr6-51129847-3	chr6	51129741	51129941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140069.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	23.02	21.88	33.09	33.38	33.96	37.63	29.23	41.07	46.03	43.68	66.83	32.27
Merged-chr11-62551080-3	chr11	62550990	62551190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-81.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	144.96	128.53	96.41	101.76	112.5	159.61	90.68	106.4	148.7	146.61	178.88	85.21
Merged-chr1-36038947-3	chr1	36038862	36039062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29438.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	23.42	21.13	30.8	43.84	38.05	28.22	22.92	37.65	51.34	32.13	50.75	39.78
Merged-chr7-49251194-3	chr7	49251050	49251250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4961.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	21.0	20.37	21.68	37.4	40.91	18.81	29.23	37.18	27.93	37.16	27.13	20.99
Merged-chr10-24643042-3	chr10	24642966	24643166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308329, intron 24 of 24)	intron (NM_001308329, intron 24 of 24)	47624.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	61.38	40.24	59.9	67.17	78.14	58.64	97.66	106.6	91.85	59.25	83.91	44.48
Merged-chr6-30856140-3	chr6	30856041	30856241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149738, intron 10 of 24)	ORR1B1|LTR|ERVL-MaLR	40653.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	27.05	35.21	56.48	44.64	38.46	37.94	18.6	40.96	56.06	29.12	54.27	39.78
Merged-chr4-55532586-3	chr4	55532481	55532681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-106.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	179.69	198.96	195.1	173.35	158.32	235.18	153.13	159.45	209.67	214.9	188.43	136.9
Merged-chr6-72737095-3	chr6	72737013	72737213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	MIRb|SINE|MIR	51932.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	14.94	10.56	16.54	20.91	20.05	15.68	20.26	28.68	21.44	19.08	46.73	19.42
Merged-chr15-57976083-3	chr15	57975976	57976176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9827.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	28.27	29.93	18.83	39.42	34.77	40.14	27.9	26.89	57.83	60.75	58.29	29.76
Merged-chr2-180119234-3	chr2	180119140	180119340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-126.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	335.96	327.99	353.68	415.07	353.87	410.47	339.48	437.81	412.06	426.29	558.76	296.98
Merged-chr4-72201055-3	chr4	72200962	72201162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	-169.0	NM_001285530	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	339.19	370.5	441.53	400.19	392.74	450.29	433.15	459.48	493.49	504.11	769.3	323.29
Merged-chr13-23551688-3	chr13	23551582	23551782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	-39.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	69.86	39.49	69.03	59.93	53.18	63.66	48.5	62.92	66.87	70.29	127.13	59.21
Merged-chr17-33555612-3	chr17	33555484	33555684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-123.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	46.03	61.37	35.37	39.42	51.55	66.48	48.83	45.42	45.83	47.7	64.32	31.95
Merged-chr16-87700042-3	chr16	87699959	87700159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1105.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	31.9	34.46	46.78	32.98	57.27	63.97	61.78	57.39	67.46	68.79	64.82	29.45
Merged-chr19-46395233-3	chr19	46395130	46395330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016860, intron 1 of 10)	CpG	505.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	118.31	116.71	135.2	128.7	142.37	146.44	78.06	125.61	155.97	132.56	192.95	84.58
Merged-chr2-112261936-3	chr2	112261840	112262040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025403)	promoter-TSS (NM_025403)	14.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	31.09	24.9	24.53	23.73	29.46	43.59	19.6	29.13	40.52	32.13	74.87	26.0
Merged-chr6-72552882-3	chr6	72552784	72552984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	3237.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	121.95	101.11	109.53	98.54	148.91	159.92	150.14	131.44	148.11	140.59	146.72	59.52
Merged-chr3-146150186-3	chr3	146150087	146150287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005846)	promoter-TSS (NM_001005846)	13.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	27.46	28.17	38.22	27.75	43.36	44.21	22.92	46.23	49.57	44.69	63.31	34.46
Merged-chr12-51704141-3	chr12	51704055	51704255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12241.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	27.46	27.67	43.35	29.76	39.68	31.67	33.88	61.29	76.51	38.16	52.26	29.45
Merged-chr12-82225967-3	chr12	82225850	82226050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55934.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	252.78	220.09	247.58	259.42	218.05	246.78	164.09	237.53	269.46	278.67	344.2	195.48
Merged-chr3-20155675-3	chr3	20155581	20155781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013755)	promoter-TSS (NM_013755)	-565.0	NM_013755	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	24.63	23.64	31.38	20.11	28.64	37.32	46.5	55.26	24.39	29.12	34.67	24.12
Merged-chr8-25745192-3	chr8	25745093	25745293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361595, intron 7 of 15)	intron (NM_001361595, intron 7 of 15)	9087.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	26.25	33.7	54.76	54.3	32.73	45.15	30.56	49.32	51.73	27.11	61.81	26.0
Merged-chr17-23726396-3	chr17	23726312	23726512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023058)	promoter-TSS (NM_023058)	76.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	79.55	76.72	65.03	65.96	68.32	113.2	48.5	57.73	115.06	102.43	135.67	47.93
Merged-chr6-106800082-3	chr6	106799977	106800177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175357)	promoter-TSS (NM_175357)	10.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	144.16	135.07	103.25	84.06	160.78	158.67	108.62	152.47	153.42	171.72	205.52	69.55
Merged-chr18-36194042-3	chr18	36193934	36194134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	3126.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	43.21	35.72	51.91	58.72	44.59	30.73	38.86	45.67	47.21	28.12	44.72	32.58
Merged-chr1-52119380-3	chr1	52119291	52119491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-47.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	163.54	139.35	156.88	172.95	132.55	187.2	163.1	185.64	191.18	184.77	204.01	110.27
Merged-chr1-148920530-1	chr1	148920430	148920630	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1001909.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.42	3.02	1.14	3.22	3.68	4.39	18.6	17.1	1.38	4.52	13.06	1.57
Merged-chr7-145293427-3	chr7	145293340	145293540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7469.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	83.59	80.74	108.96	109.4	82.64	83.41	81.71	87.25	79.86	79.33	127.63	46.68
Merged-chr2-166771500-5	chr2	166771406	166771606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-22261.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	10.09	20.37	21.11	26.14	18.0	25.4	23.92	17.13	21.44	26.11	16.08	15.98
Merged-chr2-28517417-3	chr2	28517323	28517523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	4256.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	34.73	36.47	33.66	39.82	43.36	42.65	18.93	24.03	54.48	39.16	45.73	17.23
Merged-chr2-180678824-3	chr2	180678749	180678949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111965, intron 5 of 12)	intron (NR_111965, intron 5 of 12)	13199.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	41.99	35.72	33.09	36.6	27.41	31.04	27.9	38.3	30.29	31.13	38.19	23.81
Merged-chr11-51367474-3	chr11	51367379	51367579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	77559.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	21.4	15.85	26.81	27.35	46.23	45.78	21.92	47.41	33.04	38.16	61.81	24.43
Merged-chr13-9125385-3	chr13	9125271	9125471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	31490.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	98.53	107.4	107.25	106.99	104.73	149.26	82.05	135.79	140.63	76.82	157.78	78.63
Merged-chr10-75514458-3	chr10	75514353	75514553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	2928.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	31.9	34.46	58.19	28.56	20.05	26.65	29.56	38.5	54.68	49.71	59.29	42.92
Merged-chr19-12457556-3	chr19	12457435	12457635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3244.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	45.23	55.34	70.74	49.47	47.46	46.1	41.85	52.65	46.22	44.19	46.23	36.65
Merged-chr18-62047181-3	chr18	62047081	62047281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94106.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	138.5	106.4	166.0	190.24	138.69	126.37	118.59	135.65	108.77	95.9	167.83	83.33
Merged-chr6-72107984-3	chr6	72107889	72108089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	10381.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	18.98	15.59	28.52	32.18	23.32	16.31	21.26	35.94	26.95	17.57	37.18	14.72
Merged-chr7-29263807-1	chr7	29263707	29263907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	-15340.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	11.31	12.32	4.56	1.61	4.91	7.84	1.0	0.98	5.51	5.52	9.55	2.51
Merged-chr14-65100619-3	chr14	65100518	65100718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2512.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	43.21	26.41	45.07	46.25	35.18	24.77	23.92	34.37	26.95	23.6	29.14	14.1
Merged-chr19-5529540-3	chr19	5529452	5529652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19035.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	35.94	20.63	19.4	21.32	33.55	30.42	15.61	25.32	34.81	30.63	34.67	25.37
Merged-chr13-20108111-3	chr13	20108005	20108205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	17598.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	75.51	82.25	101.54	81.65	69.14	102.85	43.18	83.08	92.64	78.83	77.88	40.72
Merged-chr11-4714942-1	chr11	4714842	4715042	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	10286.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0.4	4.53	0.0	4.02	5.73	2.82	1.99	4.68	26.16	19.08	37.69	26.63
Merged-chr10-37141186-3	chr10	37141092	37141292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2266.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	124.77	108.66	86.71	111.41	119.87	106.3	76.07	79.77	120.96	162.18	156.77	58.27
Merged-chr9-105073190-1	chr9	105073090	105073290	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053159, intron 7 of 9)	L1MC4|LINE|L1	19922.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	3.23	1.76	1.14	8.45	8.59	2.51	1.33	8.41	0.39	1.0	4.52	6.58
Merged-chr11-68691318-1	chr11	68691218	68691418	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-597.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	20.19	13.33	14.26	14.88	22.5	22.89	14.95	18.87	23.21	16.07	20.1	16.6
Merged-chr4-149774286-3	chr4	149774172	149774372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027460)	promoter-TSS (NM_027460)	-5.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	173.63	170.54	170.0	147.21	191.87	231.73	146.49	146.19	224.81	214.4	276.87	140.66
Merged-chr14-57665059-3	chr14	57664954	57665154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-98.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	37.15	48.04	68.45	49.47	47.87	58.64	50.16	54.08	57.04	52.72	54.27	34.77
Merged-chr10-99430888-3	chr10	99430773	99430973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	167642.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	51.28	55.08	53.05	50.68	57.27	69.61	47.83	64.57	63.53	63.77	64.32	25.06
Merged-chr2-68430822-3	chr2	68430717	68430917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	41164.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	28.67	42.26	46.21	21.32	20.05	44.84	32.88	22.79	50.35	49.71	33.16	19.42
Merged-chr11-3895187-3	chr11	3895081	3895281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026150)	promoter-TSS (NM_026150)	-55.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	61.38	39.49	45.07	55.5	68.73	71.49	21.26	51.93	83.2	73.81	142.71	57.01
Merged-chr2-75704636-3	chr2	75704542	75704742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	21.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	188.57	197.7	219.63	181.39	234.83	285.35	229.53	266.55	374.1	368.04	489.92	250.61
Merged-chr8-125558843-3	chr8	125558728	125558928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	11035.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	29.07	24.15	39.93	47.46	17.59	31.04	20.26	35.16	28.91	25.11	28.64	22.87
Merged-chr2-72196719-1	chr2	72196619	72196819	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 8 of 26)	ID_B1|SINE|B4	-88918.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.21	3.02	0.0	0.0	0.41	1.57	0.0	0.08	27.54	21.59	35.17	17.54
Merged-chr2-93461982-3	chr2	93461832	93462032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-81.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	76.32	80.99	69.03	70.38	73.23	76.51	65.11	80.5	117.23	91.89	115.07	55.45
Merged-chr12-108639348-3	chr12	108639259	108639459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	3606.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	148.6	140.1	138.05	178.98	166.91	208.53	147.82	175.96	203.18	193.31	239.18	122.17
Merged-chr10-98744340-3	chr10	98744253	98744453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170289.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	86.01	98.1	107.82	121.87	101.05	111.32	93.34	116.8	102.08	115.99	129.64	70.8
Merged-chr3-79542752-3	chr3	79542669	79542869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24910.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	24.23	17.36	19.4	19.31	29.46	43.27	35.87	50.72	47.6	44.19	40.7	26.31
Merged-chr9-53700623-3	chr9	53700515	53700715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5617.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	40.38	30.18	31.95	50.68	46.23	58.32	21.59	49.21	51.53	46.19	84.92	27.25
Merged-chr18-82909848-3	chr18	82909760	82909960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1019.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	20.59	21.88	15.4	14.48	18.82	33.24	22.59	16.37	24.0	31.13	28.14	23.49
Merged-chr2-71873127-3	chr2	71872962	71873162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172665)	promoter-TSS (NM_172665)	-162.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	80.36	88.54	80.43	119.05	114.55	95.95	79.72	102.08	102.87	105.94	131.15	61.4
Merged-chr19-6341123-3	chr19	6341050	6341250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-10.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	36.34	48.54	41.64	27.35	72.82	63.34	29.9	36.2	72.97	76.32	78.39	33.83
Merged-chr8-30936269-1	chr8	30936169	30936369	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153258.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.0	1.26	1.14	1.61	0.0	0.0	1.99	0.06	7.08	7.53	5.53	8.14
Merged-chr11-69368162-3	chr11	69368060	69368260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	1266.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	33.11	29.68	27.95	28.96	38.86	46.1	27.24	40.01	54.29	35.65	31.66	42.92
Merged-chr1-131384649-3	chr1	131384549	131384749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-105086.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	64.2	54.08	51.34	45.45	60.14	94.07	50.49	45.76	65.1	51.21	66.33	45.42
Merged-chr8-115429711-3	chr8	115429600	115429800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	56.94	56.09	71.88	81.65	46.23	87.17	36.87	66.76	91.26	60.25	78.89	37.59
Merged-chr8-22192853-3	chr8	22192748	22192948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027338)	promoter-TSS (NM_027338)	-12.0	NM_027338	70160.0	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	67.03	61.37	72.45	71.19	105.14	101.28	88.03	93.73	84.38	99.42	126.12	64.53
Merged-chr7-123377935-3	chr7	123377826	123378026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	-56.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	116.29	124.0	132.35	136.35	150.14	174.66	104.63	144.39	154.99	164.19	214.06	116.22
Merged-chr2-25228702-3	chr2	25228545	25228745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_080854)	TTS (NM_080854)	-3943.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	30.28	38.23	38.22	35.8	27.82	43.59	29.9	25.51	27.73	37.66	34.67	23.49
Merged-chr12-102426542-3	chr12	102426450	102426650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	13263.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	102.56	77.72	111.81	107.39	119.05	127.31	108.95	156.0	116.83	98.41	131.15	57.95
Merged-chr2-33371472-3	chr2	33371357	33371557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290572)	promoter-TSS (NM_001290572)	37.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	60.97	53.58	50.77	54.7	64.23	57.07	49.49	62.5	77.5	80.84	101.5	40.1
Merged-chr7-127274109-3	chr7	127274035	127274235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-76.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	60.17	40.5	19.4	28.56	38.46	43.9	18.27	23.33	53.89	61.76	35.17	37.91
Merged-chr1-93119019-3	chr1	93118923	93119123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16217.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	21.4	23.14	21.11	13.27	34.77	27.28	15.28	35.05	35.21	30.63	48.74	24.43
Merged-chr1-143803745-3	chr1	143803628	143803828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019562, intron 10 of 10)	intron (NM_019562, intron 10 of 10)	26450.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	30.28	28.67	28.52	26.95	27.41	45.78	14.95	41.3	46.62	31.13	41.2	28.82
Merged-chr12-103388687-3	chr12	103388578	103388778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026580)	promoter-TSS (NM_026580)	-3.0	NM_026580	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	38.36	39.49	41.64	61.94	78.14	62.09	81.05	99.39	68.64	66.28	106.53	41.98
Merged-chr10-4107840-3	chr10	4107723	4107923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	105297.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	111.45	106.4	142.04	145.6	155.05	229.54	176.05	196.99	29.7	57.74	57.79	13.16
Merged-chr17-26498456-1	chr17	26498356	26498556	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	10016.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.09	6.79	2.85	3.22	14.73	16.31	4.32	3.31	7.08	7.53	2.01	3.13
Merged-chr3-138526376-3	chr3	138526257	138526457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-64.0	NR_035481	100316706.0		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	46.44	56.09	58.76	57.92	70.77	105.36	100.98	121.77	108.57	100.92	123.11	78.0
Merged-chr2-73892807-3	chr2	73892685	73892885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284376)	promoter-TSS (NM_001284376)	-146.0	NM_001284370	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	227.34	220.59	215.06	183.0	269.19	310.75	186.68	221.5	290.31	307.29	326.11	178.88
Merged-chr11-46830545-3	chr11	46830443	46830643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	MLTR14|LTR|ERV1	19744.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	21.4	24.65	25.67	27.75	40.5	43.9	23.92	39.65	32.06	20.59	29.14	12.84
Merged-chr2-29869101-3	chr2	29869023	29869223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207298)	promoter-TSS (NM_207298)	-371.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	19.79	34.21	23.39	19.31	37.23	42.33	11.96	29.72	31.67	25.61	45.73	22.56
Merged-chr17-88458275-3	chr17	88458172	88458372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	17568.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	26.25	22.64	23.39	21.32	24.96	45.15	23.92	39.22	47.99	37.66	52.76	26.0
Merged-chr10-94356952-3	chr10	94356875	94357075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45026.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	79.95	84.51	67.88	69.58	75.68	106.61	80.72	80.86	98.34	105.44	85.92	52.32
Merged-chr1-55507271-3	chr1	55507170	55507370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	101324.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	71.47	59.11	70.74	65.56	71.18	104.11	53.15	89.02	91.07	90.38	116.58	50.12
Merged-chr11-49237806-3	chr11	49237710	49237910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6381.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	30.28	30.94	43.93	38.21	12.27	15.37	16.94	19.4	17.51	16.57	30.15	27.25
Merged-chr17-84072054-3	chr17	84071964	84072164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	21.8	20.12	35.37	25.34	21.68	27.59	17.61	26.66	33.24	26.11	45.73	26.94
Merged-chr17-24205569-3	chr17	24205454	24205654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	8.0	NM_001163851	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	42.8	34.71	35.94	27.75	53.18	42.96	20.59	30.36	70.22	50.71	60.3	24.75
Merged-chr12-12294549-3	chr12	12294447	12294647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	32408.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	36.34	28.42	39.36	24.94	43.36	45.15	28.23	41.33	54.68	50.21	83.41	45.74
Merged-chr10-79877890-3	chr10	79877783	79877983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1784.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	40.78	30.69	40.5	32.18	49.91	48.29	32.88	38.61	50.55	40.67	59.29	30.39
Merged-chr18-80319366-3	chr18	80319277	80319477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	44877.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	40.38	37.48	37.08	30.97	42.96	32.93	26.91	38.44	31.27	28.62	39.7	31.01
Merged-chr4-88757683-2	chr4	88757562	88757762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243150)	promoter-TSS (NM_001243150)	-182.0	NM_001243150	100041062.0	Mm.489587	NM_001243150		Gm13286	-	predicted gene 13286	protein-coding	104.99	86.78	110.1	132.73	0.0	0.0	0.0	0.03	79.07	62.76	92.46	35.4
Merged-chr2-122765368-3	chr2	122765260	122765460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162503)	promoter-TSS (NM_001162503)	1.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	39.98	39.74	34.8	53.89	68.73	48.6	36.87	81.7	74.54	69.79	108.03	66.73
Merged-chr11-86734397-3	chr11	86734303	86734503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 2 of 31)	intron (NM_001003908, intron 2 of 31)	23164.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	23.42	28.42	24.53	32.18	30.27	37.32	25.24	15.5	39.73	39.16	30.15	18.48
Merged-chr12-72664816-3	chr12	72664727	72664927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	1.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	57.34	49.55	86.14	93.71	82.64	72.44	72.75	108.06	83.0	80.84	115.07	61.09
Merged-chr3-102715414-3	chr3	102715276	102715476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19394.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	20.19	33.7	23.96	34.59	27.41	26.65	13.62	25.15	19.28	22.09	25.63	12.53
Merged-chr1-131184532-3	chr1	131184421	131184621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	15664.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	37.96	28.42	36.51	39.82	44.18	42.33	27.9	41.92	39.93	48.2	38.69	30.7
Merged-chr7-30421684-3	chr7	30421573	30421773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-58.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	67.84	96.34	45.07	34.19	62.18	92.19	32.22	26.05	76.91	97.41	84.42	42.92
Merged-chr19-46330171-3	chr19	46330067	46330267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133694, exon 4 of 4)	exon (NM_133694, exon 4 of 4)	1983.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	34.73	44.02	49.63	37.4	42.96	48.29	22.92	42.45	60.19	63.27	76.38	34.15
Merged-chr3-88607598-3	chr3	88607504	88607704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8603.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	50.88	31.69	55.33	37.0	40.5	61.77	37.87	43.26	61.37	75.82	74.37	23.81
Merged-chr15-73090373-3	chr15	73090287	73090487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-25.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	75.91	94.57	87.28	37.0	70.77	125.43	35.21	64.07	128.83	146.11	144.71	78.0
Merged-chr12-16811073-3	chr12	16810988	16811188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027677, exon 1 of 8)	non-coding (NR_027677, exon 1 of 8)	123.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	12.11	16.85	18.83	21.32	31.09	37.94	33.22	37.96	35.4	24.1	23.62	25.06
Merged-chr11-29692828-3	chr11	29692735	29692935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-63.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	320.61	338.81	312.04	351.12	333.42	374.09	295.96	316.15	380.79	370.05	454.75	219.29
Merged-chr3-95653840-3	chr3	95653767	95653967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4854.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	94.49	77.22	74.16	99.75	111.69	96.58	60.12	76.35	107.79	97.91	115.57	52.94
Merged-chr6-37262736-3	chr6	37262678	37262878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	37198.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	22.61	13.58	35.94	41.43	42.55	21.32	46.84	62.22	17.7	15.57	22.11	19.74
Merged-chr1-162547216-3	chr1	162547128	162547328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	1117.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	33.52	19.37	33.66	33.78	23.73	19.13	39.2	40.29	33.63	34.14	45.73	26.0
Merged-chr10-77314900-3	chr10	77314801	77315001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024838, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	55601.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	104.99	96.59	105.53	133.53	91.23	119.16	73.08	135.39	93.82	71.3	138.69	79.88
Merged-chr8-126548053-3	chr8	126547921	126548121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45415.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	70.26	43.01	64.46	61.54	69.55	72.12	59.46	69.84	55.66	48.7	105.52	46.68
Merged-chr7-47008448-3	chr7	47008330	47008530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175318)	promoter-TSS (NM_175318)	-16.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	185.34	168.78	176.84	142.38	177.96	205.7	94.67	123.53	255.89	302.27	214.56	150.68
Merged-chr17-30576414-3	chr17	30576316	30576516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-129.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	251.56	270.9	278.95	268.27	93.28	114.14	79.72	51.7	74.54	70.8	76.88	55.45
Merged-chr9-90034126-3	chr9	90034017	90034217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20150.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	119.93	100.86	100.97	111.01	97.78	136.09	71.08	106.01	159.91	148.12	139.19	91.47
Merged-chr3-35932433-3	chr3	35932345	35932545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	-111.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	24.63	30.18	32.52	16.49	23.32	21.95	44.18	21.93	24.0	11.55	33.16	12.22
Merged-chr12-41290007-3	chr12	41289903	41290103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	196054.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	39.98	22.39	56.48	57.51	54.41	53.31	76.07	74.78	48.39	48.2	40.7	35.4
Merged-chr10-79855079-3	chr10	79855002	79855202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029447)	promoter-TSS (NR_029447)	-131.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	63.4	80.74	39.93	49.47	33.55	116.02	38.53	24.9	62.94	106.45	89.94	40.41
Merged-chr14-14294675-3	chr14	14294574	14294774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33439.0	NM_147027	18330.0	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	17.36	17.86	15.4	32.58	31.5	26.97	36.87	39.25	33.83	32.13	49.75	35.09
Merged-chr1-16657105-3	chr1	16657000	16657200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	19.0	NM_001310470	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	162.73	164.25	142.04	173.75	146.05	181.56	136.52	194.19	212.03	207.87	240.19	120.92
Merged-chr4-62525394-3	chr4	62525259	62525459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177607)	promoter-TSS (NM_177607)	-10.0	NM_001356420	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	61.38	72.69	82.15	65.16	85.91	102.22	41.85	77.13	119.19	136.57	135.17	66.1
Merged-chr10-69252572-1	chr10	69252472	69252672	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39378.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	16.96	17.61	17.11	15.69	19.23	21.01	11.96	16.85	23.41	12.05	24.12	10.65
Merged-chr11-70787201-3	chr11	70787105	70787305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	22758.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	73.09	55.34	48.49	48.26	55.64	84.98	38.86	59.38	57.24	69.79	68.34	39.47
Merged-chr3-127796492-3	chr3	127796394	127796594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	5837.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	98.12	105.64	143.18	188.23	75.68	116.02	62.45	155.66	90.48	62.26	135.17	69.23
Merged-chr1-134679638-3	chr1	134679526	134679726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-29674.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	18.57	20.88	41.64	37.4	90.41	108.5	94.34	125.78	94.41	90.88	140.7	73.3
Merged-chr13-99334217-3	chr13	99334138	99334338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 4 of 9)	RMER16_Mm|LTR|ERVK	10440.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	31.9	33.2	38.22	37.0	22.91	31.36	32.88	18.98	42.09	36.65	25.12	29.45
Merged-chr10-54112718-2	chr10	54112613	54112813	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36791.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	2.42	4.02	2.28	11.66	6.95	4.08	10.96	20.02	8.85	6.03	18.09	4.7
Merged-chr2-152831484-4	chr2	152831412	152831612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	216.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	46.03	62.38	45.07	46.25	67.5	74.63	55.47	47.55	74.94	71.8	80.9	52.94
Merged-chr18-67774830-3	chr18	67774717	67774917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039088)	promoter-TSS (NM_001039088)	-59.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	109.83	108.41	101.54	111.81	126.41	97.83	83.04	131.66	158.73	147.12	169.34	98.37
Merged-chr4-86748513-3	chr4	86748422	86748622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_184088)	promoter-TSS (NM_184088)	-33.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	100.55	91.56	112.95	133.53	146.05	142.36	128.88	145.63	154.2	156.15	198.48	96.17
Merged-chr11-67025069-3	chr11	67024988	67025188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-66.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	93.68	95.83	116.37	121.06	137.87	124.17	78.06	116.05	153.02	126.53	236.67	93.35
Merged-chr7-43444038-3	chr7	43443943	43444143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-29.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	181.71	138.59	230.46	187.43	213.14	212.29	143.17	200.36	245.27	215.4	317.07	133.76
Merged-chr9-19622110-3	chr9	19622014	19622214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	23.0	NR_153375	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	295.98	359.43	247.01	288.38	288.42	390.4	303.94	253.21	444.91	433.82	455.25	248.11
Merged-chr10-122679434-3	chr10	122679329	122679529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106182)	TTS (NR_106182)	114.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	25.44	33.45	39.36	34.59	22.91	28.22	42.19	30.45	34.22	28.12	41.71	25.37
Merged-chr17-33685471-3	chr17	33685365	33685565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-7.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	100.55	59.61	89.56	59.93	81.82	101.28	42.19	64.57	105.82	100.92	107.03	74.87
Merged-chr18-11915697-1	chr18	11915597	11915797	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146287, intron 4 of 9)	intron (NM_001146287, intron 4 of 9)	-75259.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	3.52	0.0	0.8	6.14	6.27	10.3	21.28	0.0	0.0	8.54	0.63
Merged-chr6-34780620-4	chr6	34780498	34780698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289657, exon 1 of 19)	5' UTR (NM_001289657, exon 1 of 19)	166.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	27.46	45.28	18.25	33.38	18.82	29.79	48.16	28.01	30.09	42.18	35.17	34.46
Merged-chr18-10617818-3	chr18	10617724	10617924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009226)	promoter-TSS (NM_009226)	28.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	40.78	34.71	26.24	40.62	53.59	45.78	36.87	37.26	43.47	49.21	53.77	30.39
Merged-chr6-71198112-3	chr6	71198010	71198210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1769.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	25.44	22.13	33.09	33.78	28.23	38.57	25.24	47.58	46.22	38.16	47.23	30.7
Merged-chr6-86669411-3	chr6	86669287	86669487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-228.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	276.2	291.02	277.81	317.34	335.87	399.49	305.6	346.71	459.66	457.42	613.53	276.61
Merged-chr8-75089743-3	chr8	75089629	75089829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3889.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	86.82	58.1	91.84	85.67	79.37	88.43	62.78	70.15	90.67	101.43	106.02	48.24
Merged-chr15-79694675-3	chr15	79694581	79694781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013818, intron 2 of 11)	intron (NM_013818, intron 2 of 11)	3785.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	4.85	25.15	22.25	6.84	14.73	20.7	4.98	3.34	41.89	30.63	39.7	16.92
Merged-chr13-62653237-3	chr13	62653142	62653342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29060.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	31.9	23.64	50.2	57.92	45.82	56.76	56.47	88.09	61.37	57.24	94.47	53.88
Merged-chr17-81480912-3	chr17	81480810	81481010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257477.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	38.36	25.4	35.94	51.48	35.18	25.09	30.89	40.93	51.53	30.63	27.64	31.01
Merged-chr1-65113707-3	chr1	65113587	65113787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	9527.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	30.69	22.89	46.78	32.58	88.37	99.72	83.71	126.53	110.93	99.42	151.75	90.22
Merged-chr11-83662459-3	chr11	83662383	83662583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-101.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	90.05	101.62	91.27	81.65	79.78	145.18	67.1	91.65	88.51	115.99	103.01	61.09
Merged-chr13-105300138-3	chr13	105300028	105300228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5643.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	69.86	57.85	97.55	104.17	72.0	72.44	65.44	107.41	62.55	53.22	104.52	52.32
Merged-chr14-102810516-3	chr14	102810429	102810629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172103.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	12.92	18.86	35.37	18.1	38.05	26.97	23.58	19.93	51.14	29.12	61.3	19.42
Merged-chr18-12168015-3	chr18	12167946	12168146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-684.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	13.33	17.61	16.54	18.1	18.82	23.83	10.63	18.5	22.82	37.66	31.15	16.92
Merged-chr18-12128630-3	chr18	12128517	12128717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024182)	promoter-TSS (NM_024182)	-233.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	108.62	109.67	156.88	132.73	127.64	158.35	97.66	131.19	120.37	107.95	151.75	72.99
Merged-chr2-156393909-3	chr2	156393807	156394007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-928.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	35.53	22.89	18.25	21.32	17.18	38.57	14.62	18.93	45.04	40.17	38.19	21.62
Merged-chr14-31573127-3	chr14	31573036	31573236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	4247.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	25.04	21.63	40.5	27.75	33.96	44.53	29.9	42.28	32.85	47.7	36.68	34.77
Merged-chr11-23665946-3	chr11	23665848	23666048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	-13.0	NM_023651	72129.0	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	59.76	53.83	48.49	74.41	64.23	74.0	53.15	74.08	104.05	85.36	76.38	46.36
Merged-chr2-22864872-3	chr2	22864763	22864963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-30659.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	48.05	40.24	58.76	42.23	38.05	57.38	26.24	53.8	61.76	62.26	58.29	37.28
Merged-chr3-9826337-3	chr3	9826243	9826443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	7336.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	28.27	19.62	25.1	26.14	38.86	21.01	10.63	35.72	26.55	18.08	56.28	23.81
Merged-chr5-142794788-3	chr5	142794694	142794894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	22593.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	91.66	67.91	127.21	103.37	87.55	86.55	52.48	117.62	107.79	63.27	131.15	57.64
Merged-chr11-99165111-3	chr11	99164993	99165193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10016.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	89.64	82.5	62.18	29.76	74.46	109.75	45.84	21.0	122.34	126.03	90.95	34.15
Merged-chr10-98878456-3	chr10	98878355	98878555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36187.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	49.26	33.45	33.66	26.95	37.23	44.53	27.24	31.09	51.53	42.68	26.13	22.87
Merged-chr13-22051072-3	chr13	22050949	22051149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7819.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	51.69	32.7	30.23	45.45	60.55	45.15	36.21	62.13	60.19	62.26	84.92	43.54
Merged-chr13-106936933-3	chr13	106936827	106937027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029665)	promoter-TSS (NM_029665)	31.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	70.66	77.97	94.7	92.1	78.14	105.67	83.71	70.6	156.96	128.54	163.81	83.64
Merged-chr2-164878021-1	chr2	164877921	164878121	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1347.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	1.21	0.75	0.57	0.0	0.82	0.31	0.0	0.87	40.32	57.74	19.09	30.39
Merged-chr4-139493820-3	chr4	139493726	139493926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36722.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	65.82	64.14	87.28	72.8	103.5	132.33	93.01	72.84	77.69	76.32	94.97	54.82
Merged-chr7-105746593-3	chr7	105746482	105746682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009906, exon 13 of 13)	3' UTR (NM_009906, exon 13 of 13)	-2244.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	29.07	29.18	31.38	20.91	14.32	22.89	13.95	21.42	27.93	17.57	41.71	18.48
Merged-chr3-9879674-2	chr3	9879562	9879762	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45983.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.46	1.26	5.7	5.23	18.0	15.99	20.93	20.58	21.24	22.59	18.09	12.22
Merged-chr11-50197098-1	chr11	50196998	50197198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026543, intron 5 of 6)	intron (NM_026543, intron 5 of 6)	13722.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	14.13	11.32	1.14	1.61	0.41	4.7	1.66	0.36	4.13	4.52	1.0	1.57
Merged-chr11-3173876-6	chr11	3173687	3173887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	polypurine|Low_complexity|Low_complexity	19676.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	33.52	35.97	31.95	39.82	69.14	39.51	82.05	43.99	7.08	11.05	9.55	16.29
Merged-chr4-147809800-3	chr4	147809703	147809903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	-15.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	75.51	72.69	77.58	71.59	69.55	94.07	48.5	26.52	110.34	124.02	125.12	51.38
Merged-chrX-48429737-3	chrX	48429635	48429835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	33397.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	20.59	14.34	26.24	24.13	28.23	26.97	29.23	33.5	29.5	24.1	42.21	20.99
Merged-chr7-141372345-3	chr7	141372240	141372440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7230.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	92.87	73.7	123.79	73.2	78.96	104.73	90.35	116.05	102.67	88.37	118.59	67.35
Merged-chr16-11461708-3	chr16	11461578	11461778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	56030.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	62.18	52.82	64.46	81.24	85.09	85.92	44.84	95.33	81.04	87.37	75.87	50.44
Merged-chr9-90113832-3	chr9	90113727	90113927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	993.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	85.2	98.85	88.99	74.81	75.68	133.27	107.29	100.79	144.96	117.49	178.88	84.27
Merged-chr6-54946708-3	chr6	54946613	54946813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 3 of 11)	intron (NM_001171007, intron 3 of 11)	24948.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	57.74	51.56	65.6	42.63	71.59	61.77	50.49	76.93	91.46	105.94	70.35	40.1
Merged-chr11-78328389-3	chr11	78328287	78328487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-35.0	NM_201406	276846.0	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	65.01	51.31	52.48	59.93	85.5	89.68	38.2	54.65	83.59	85.36	88.44	72.05
Merged-chr18-57660083-3	chr18	57659996	57660196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	-21511.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	23.82	22.13	47.92	24.13	32.73	27.28	24.25	48.08	64.51	38.66	50.75	38.53
Merged-chr9-96483863-3	chr9	96483761	96483961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5186.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	19.38	19.37	37.08	34.59	36.0	56.44	42.85	53.33	55.66	58.24	64.82	35.4
Merged-chr16-91597807-3	chr16	91597705	91597905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030018)	promoter-TSS (NM_030018)	-125.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	121.95	129.79	128.92	121.87	151.37	193.47	99.32	135.31	181.15	172.22	202.0	98.05
Merged-chr15-55547323-3	chr15	55547228	55547428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026759, intron 3 of 6)	intron (NM_026759, intron 3 of 6)	9984.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	22.21	27.67	23.96	21.32	30.68	28.54	13.62	31.71	25.18	34.65	31.15	15.35
Merged-chr3-84772064-3	chr3	84771962	84772162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43515.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	37.96	34.96	44.5	54.7	81.0	95.33	80.39	61.18	81.04	82.35	102.0	46.36
Merged-chr4-141271839-3	chr4	141271755	141271955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6584.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	96.91	32.45	83.86	67.97	97.78	100.97	140.51	140.78	78.09	76.32	86.43	68.61
Merged-chr4-40268568-3	chr4	40268470	40268670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134097, intron 1 of 2)	CpG-9801	-1009.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	36.34	29.93	39.93	47.86	40.5	41.71	36.21	47.22	59.79	51.21	62.31	27.57
Merged-chr7-66135832-3	chr7	66135734	66135934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26319.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	73.09	39.99	39.36	62.34	65.46	72.44	48.16	78.03	60.78	53.73	69.34	64.85
Merged-chr5-92525107-3	chr5	92524952	92525152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19395.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	27.46	24.4	35.94	37.4	55.64	40.76	47.5	81.95	53.89	32.64	60.3	34.77
Merged-chr16-91820487-3	chr16	91820417	91820617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 13 of 39)	exon (NM_010587, exon 13 of 39)	91146.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	43.21	19.62	31.38	44.64	30.27	42.65	23.58	48.11	46.42	37.16	50.25	34.77
Merged-chr11-83964368-3	chr11	83964267	83964467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194341)	promoter-TSS (NM_194341)	-64.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	30.28	14.84	26.81	19.31	38.86	26.97	13.62	26.72	37.17	24.1	32.66	19.11
Merged-chr14-30974353-3	chr14	30974241	30974441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011849, exon 8 of 15)	exon (NM_011849, exon 8 of 15)	22964.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	25.04	20.12	30.8	18.9	36.82	28.85	22.92	28.93	34.62	35.15	62.31	31.64
Merged-chr6-82774524-3	chr6	82774430	82774630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-76.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	247.53	228.14	259.56	213.97	236.87	306.67	213.25	261.03	257.66	252.06	283.9	133.76
Merged-chr3-40799965-3	chr3	40799850	40800050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173169)	promoter-TSS (NM_173169)	-1.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	123.16	89.04	79.29	103.37	105.14	135.46	87.36	132.06	155.78	169.21	143.21	81.14
Merged-chr7-135705998-3	chr7	135705910	135706110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 6 of 13)	intron (NM_001081117, intron 6 of 13)	10369.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	41.99	39.49	60.47	41.43	38.46	61.77	34.88	43.74	68.05	39.67	78.89	24.43
Merged-chr19-56801471-3	chr19	56801356	56801556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170757, intron 6 of 14)	intron (NM_170757, intron 6 of 14)	12227.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	35.13	29.93	59.9	38.21	50.73	60.83	34.55	34.65	27.14	37.66	29.65	18.48
Merged-chr5-25499127-3	chr5	25499036	25499236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-353.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	26.25	23.14	29.09	24.94	28.23	27.59	24.58	27.87	40.71	45.19	57.28	28.19
Merged-chr11-110986295-3	chr11	110986198	110986398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	-11189.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	23.42	19.37	28.52	29.76	13.91	24.46	17.61	29.92	24.98	27.62	26.13	14.72
Merged-chr18-12974098-5	chr18	12973967	12974167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357396)	promoter-TSS (NM_001357396)	-393.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	47.65	64.39	51.34	39.01	50.73	72.75	44.84	47.33	75.72	93.89	103.51	62.97
Merged-chr11-11547280-1	chr11	11547180	11547380	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58014.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	1.62	1.01	0.0	0.0	0.0	0.0	0.66	0.11	35.4	18.08	31.66	15.04
Merged-chr14-56571924-3	chr14	56571822	56572022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014996)	promoter-TSS (NM_001014996)	-76.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	102.56	123.75	110.1	124.28	165.69	141.11	87.03	146.78	171.32	141.09	167.33	95.55
Merged-chr4-155705556-3	chr4	155705457	155705657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 1 of 4)	CpG	742.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	21.4	20.63	30.8	34.19	24.96	39.2	31.22	19.68	32.65	31.63	41.2	36.97
Merged-chr14-46882786-3	chr14	46882697	46882897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-168.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	75.51	68.67	102.11	99.34	83.46	84.35	72.41	95.19	77.1	70.29	117.58	66.41
Merged-chr2-92434574-1	chr2	92434474	92434674	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-505.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	15.34	15.34	17.11	21.32	21.27	26.65	12.29	24.06	19.87	27.11	19.09	16.6
Merged-chr9-106203148-3	chr9	106203041	106203241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	33.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	77.53	59.86	96.98	45.85	91.23	78.08	43.18	79.79	70.41	98.41	98.49	43.54
Merged-chr2-103606016-3	chr2	103605915	103606115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	MIRb|SINE|MIR	39705.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	97.31	103.63	130.63	111.41	94.5	133.58	94.67	114.22	141.03	168.21	128.13	76.12
Merged-chr8-70544291-3	chr8	70544180	70544380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4605.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	103.37	104.13	139.76	99.75	173.46	180.62	119.25	152.8	131.39	130.05	161.3	83.64
Merged-chr19-57358544-3	chr19	57358463	57358663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	2336.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	57.74	55.08	47.35	60.73	69.55	66.79	42.85	62.13	58.42	50.21	77.38	40.41
Merged-chr11-121237115-3	chr11	121236990	121237190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-146.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	143.35	135.07	134.06	120.66	145.23	169.33	92.01	120.81	208.29	176.24	229.13	130.95
Merged-chr4-53264000-3	chr4	53263905	53264105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	1487.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	25.04	23.9	29.09	34.19	47.05	44.53	44.51	74.22	39.93	24.6	71.86	33.21
Merged-chrX-9469355-3	chrX	9469240	9469440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007807)	promoter-TSS (NM_007807)	-16.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	49.26	45.53	40.5	26.14	51.55	35.43	34.21	47.66	63.53	46.19	40.2	30.07
Merged-chr5-36574771-3	chr5	36574671	36574871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7626.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	32.3	47.79	54.76	44.24	38.05	47.35	28.9	45.36	35.4	31.63	61.81	30.39
Merged-chr6-97212211-3	chr6	97212104	97212304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	1412.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	22.61	20.63	24.53	8.45	18.82	21.01	12.95	30.59	23.41	19.08	27.13	16.6
Merged-chr10-120201528-3	chr10	120201443	120201643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	54.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	80.36	49.8	43.93	21.72	83.46	122.29	81.71	45.25	121.55	144.61	130.65	30.39
Merged-chr13-54223448-3	chr13	54223355	54223555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	31322.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	41.19	38.74	62.18	38.61	43.36	34.18	40.19	33.95	42.88	36.65	66.83	32.89
Merged-chr11-120458089-3	chr11	120458015	120458215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025560)	promoter-TSS (NM_025560)	-14.0	NM_152807	67291.0	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	34.73	16.35	11.98	18.5	26.59	34.49	14.28	18.34	36.58	40.67	33.67	32.58
Merged-chr11-4986853-3	chr11	4986765	4986965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007454)	promoter-TSS (NM_007454)	41.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	46.03	52.82	42.78	31.37	47.87	59.58	22.26	29.1	63.14	37.66	66.33	29.13
Merged-chr19-29462652-3	chr19	29462541	29462741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	51722.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	30.69	32.45	55.9	44.24	49.5	45.15	49.16	67.65	55.47	28.62	58.79	23.81
Merged-chr16-81437664-3	chr16	81437529	81437729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010954, exon 4 of 16)	exon (NM_010954, exon 4 of 16)	236932.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	17.36	15.59	34.8	55.5	34.77	31.67	42.52	57.81	39.53	19.08	58.29	24.75
Merged-chr10-22354350-3	chr10	22354162	22354362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7632.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	97.72	78.73	71.88	84.06	71.59	105.99	65.44	44.02	51.93	77.32	57.79	37.59
Merged-chr6-91473592-3	chr6	91473500	91473700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	-151.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	188.57	158.97	170.0	192.65	228.28	244.59	186.68	244.91	253.73	246.53	333.15	188.9
Merged-chr12-112581284-3	chr12	112581177	112581377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7507.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	59.76	43.51	77.58	42.23	71.59	78.71	76.4	83.97	85.76	75.32	93.46	50.75
Merged-chr5-118354314-3	chr5	118354212	118354412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109085.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	28.27	30.18	37.08	30.16	49.5	66.48	41.19	47.19	47.8	45.69	38.69	25.37
Merged-chr13-15850563-3	chr13	15850468	15850668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155430, intron 3 of 3)	Arthur1|DNA|hAT-Tip100	43325.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	13.33	13.83	38.79	18.1	17.18	17.25	20.59	30.84	40.71	31.13	52.26	36.03
Merged-chr7-80426536-3	chr7	80426441	80426641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21105.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	98.12	91.81	130.06	82.45	126.0	100.34	62.45	101.5	115.06	110.46	112.56	101.5
Merged-chr2-35109504-3	chr2	35109423	35109623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	31.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	68.24	67.41	82.15	66.77	50.73	70.55	55.8	55.4	98.93	107.95	104.01	71.42
Merged-chr1-89569212-3	chr1	89569120	89569320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	114409.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	33.52	19.62	37.08	31.37	70.77	44.21	70.42	68.66	43.07	42.18	65.32	36.65
Merged-chr6-115331180-3	chr6	115331068	115331268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-29783.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	39.57	25.66	31.95	39.42	41.32	27.91	27.9	48.73	35.99	29.62	33.16	25.69
Merged-chr4-32615339-3	chr4	32615228	32615428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-142.0	NM_001122978	26885.0	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	317.79	326.99	415.86	369.22	376.38	414.23	335.82	397.15	404.39	454.91	501.48	270.04
Merged-chr8-46842840-3	chr8	46842747	46842947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103102.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	53.3	57.35	82.15	100.55	61.77	63.66	46.84	64.26	51.73	40.17	74.87	35.4
Merged-chr15-76899867-3	chr15	76899768	76899968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-73.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	25.04	16.6	27.38	37.4	33.55	32.61	19.6	21.48	41.3	28.12	45.22	20.05
Merged-chr6-124375589-3	chr6	124375445	124375645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11059.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	47.65	28.42	59.9	76.82	38.86	28.22	56.8	70.71	29.11	23.1	49.24	18.8
Merged-chr18-38232380-3	chr18	38232278	38232478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17820.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	40.78	21.63	34.8	42.63	40.09	48.92	31.89	43.46	35.4	37.66	48.74	22.24
Merged-chr7-99050119-3	chr7	99050015	99050215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	91029.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	118.72	94.57	112.38	100.95	106.78	148.01	103.64	97.91	103.26	109.46	125.62	81.45
Merged-chr4-125085164-3	chr4	125085081	125085281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290701)	promoter-TSS (NM_001290701)	47.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	79.55	68.16	48.49	60.33	74.46	69.3	50.82	56.16	62.35	75.82	69.85	37.59
Merged-chr6-145149232-3	chr6	145149136	145149336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361633, intron 4 of 16)	intron (NM_001361633, intron 4 of 16)	3761.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	48.05	28.17	59.33	36.6	60.96	36.69	70.09	99.53	45.63	33.14	52.76	29.76
Merged-chr2-102745400-3	chr2	102745308	102745508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153853, intron 1 of 1)	intron (NR_153853, intron 1 of 1)	1352.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	58.15	42.26	38.79	68.37	50.73	42.02	21.59	41.27	84.38	88.37	105.02	51.69
Merged-chr17-56162415-3	chr17	56162316	56162516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025566)	promoter-TSS (NM_025566)	-75.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	169.59	127.78	159.16	116.64	139.91	226.09	111.94	127.68	182.13	187.29	224.11	80.82
Merged-chr13-5804783-3	chr13	5804657	5804857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53335.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	77.93	61.62	65.6	60.33	83.46	93.44	62.45	71.08	108.97	81.84	124.11	63.91
Merged-chr4-132008376-3	chr4	132008263	132008463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	40715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	54.11	42.51	55.33	47.06	65.05	42.96	44.51	53.19	73.36	49.71	86.43	49.18
Merged-chr19-12464348-3	chr19	12464260	12464460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3581.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	54.92	46.28	47.35	44.64	44.18	63.03	63.78	68.27	60.38	56.74	57.79	29.13
Merged-chr8-95488890-3	chr8	95488803	95489003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009974)	promoter-TSS (NM_009974)	-83.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	45.63	30.43	31.95	44.24	77.32	53.31	29.9	55.04	74.15	67.78	104.52	64.22
Merged-chr2-92008461-3	chr2	92008356	92008556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	CpG	15714.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	133.25	109.92	93.55	113.02	115.78	145.5	124.56	153.03	141.22	133.06	231.64	78.94
Merged-chr16-50096655-3	chr16	50096551	50096751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23799.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	46.44	38.23	72.45	53.89	51.14	71.18	94.34	107.86	100.11	58.24	126.12	70.17
Merged-chr9-67840332-3	chr9	67840276	67840476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-20.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	27.46	26.16	26.81	19.31	30.27	36.37	24.58	16.63	35.4	35.15	57.28	21.93
Merged-chr1-91413310-3	chr1	91413212	91413412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019479)	promoter-TSS (NM_019479)	-90.0	NM_001360899	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	165.96	94.07	171.71	151.23	129.28	153.96	124.23	198.08	190.59	140.59	200.99	114.03
Merged-chr17-56218930-3	chr17	56218833	56219033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-44.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	95.7	76.46	82.15	83.66	91.23	111.63	49.16	71.02	117.03	89.88	105.52	59.21
Merged-chr7-139377586-3	chr7	139377475	139377675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11534.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	54.11	40.5	52.48	50.27	68.73	57.07	37.87	61.88	72.77	89.37	97.98	45.74
Merged-chr1-134557071-3	chr1	134556972	134557172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3106.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	61.78	72.94	83.29	76.42	88.78	103.17	59.79	79.91	108.38	112.97	134.16	62.97
Merged-chr17-70990103-3	chr17	70990012	70990212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	404.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	39.17	30.94	47.92	19.71	34.36	37.94	29.56	45.93	47.6	44.19	58.79	52.94
Merged-chr11-46076679-3	chr11	46076561	46076761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 3 of 22)	ORR1D1|LTR|ERVL-MaLR	20677.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	24.63	28.93	35.37	45.45	34.36	32.61	37.87	43.85	53.3	40.67	86.43	42.29
Merged-chr17-32284406-1	chr17	32284306	32284506	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-273.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	21.4	17.86	11.98	13.67	19.64	24.77	10.63	11.05	26.55	49.71	25.12	20.99
Merged-chr3-79565109-3	chr3	79565021	79565221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	B1F1|SINE|Alu	2558.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	75.11	50.81	70.17	47.06	65.87	111.32	78.06	97.63	98.74	96.91	93.96	47.3
Merged-chr17-12755290-3	chr17	12755191	12755391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13980.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	133.25	143.87	162.58	130.31	175.51	195.67	133.86	195.25	178.2	182.77	198.48	127.19
Merged-chr3-98032389-3	chr3	98032294	98032494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	18856.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	24.63	34.21	30.8	30.97	49.5	50.17	33.55	48.22	52.71	42.68	43.21	27.25
Merged-chr3-107631741-3	chr3	107631636	107631836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153563)	promoter-TSS (NM_153563)	-26.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	70.26	61.37	37.08	55.5	78.96	100.34	31.22	59.24	103.26	90.38	102.51	61.09
Merged-chr6-37431531-3	chr6	37431420	37431620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	10628.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	33.52	35.47	17.11	20.11	56.87	68.67	31.56	34.65	46.62	64.27	57.79	18.8
Merged-chr16-76224817-3	chr16	76224710	76224910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102197.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	96.51	95.33	76.44	82.85	64.64	163.37	103.31	119.41	110.34	105.94	106.02	57.64
Merged-chr5-139404726-1	chr5	139404626	139404826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1661.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	11.31	12.32	9.13	9.25	16.36	7.84	11.96	16.43	11.8	16.57	18.59	8.46
Merged-chr17-47295931-3	chr17	47295813	47296013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65683.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	28.67	30.69	36.51	22.93	38.46	57.07	28.23	19.77	46.81	68.29	45.73	17.23
Merged-chr17-23983036-3	chr17	23982933	23983133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7803.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	144.56	146.14	140.33	170.13	90.41	81.84	67.43	102.7	116.05	99.42	147.73	72.05
Merged-chr13-75893062-1	chr13	75892962	75893162	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028493, intron 7 of 11)	intron (NM_028493, intron 7 of 11)	50762.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	6.46	1.76	2.28	8.04	0.0	5.33	0.66	1.32	49.57	24.6	40.7	20.68
Merged-chr1-191906673-3	chr1	191906571	191906771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009579)	promoter-TSS (NM_009579)	-110.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	134.87	107.15	113.52	121.46	139.91	158.67	131.54	165.14	179.58	142.1	232.65	123.11
Merged-chr6-42299566-3	chr6	42299467	42299667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013491, exon 10 of 23)	exon (NM_013491, exon 10 of 23)	12882.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	16.15	27.67	39.36	16.89	30.68	24.77	39.53	45.62	33.63	36.15	46.73	20.99
Merged-chr2-118861914-3	chr2	118861809	118862009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-91.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	98.53	92.81	134.06	85.67	127.23	124.8	84.37	115.74	107.39	86.86	110.04	65.79
Merged-chr16-30938847-3	chr16	30938744	30938944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142588.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	26.65	24.15	26.81	37.81	33.55	20.7	20.93	23.55	29.11	28.12	28.14	20.05
Merged-chr1-57606430-1	chr1	57606330	57606530	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-168431.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.81	0.25	0.0	4.83	2.86	3.76	7.97	9.87	2.36	9.04	5.53	2.82
Merged-chr4-149076059-3	chr4	149075959	149076159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019781, exon 2 of 9)	exon (NM_019781, exon 2 of 9)	23753.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	34.32	31.69	14.26	30.57	17.59	23.2	15.61	29.47	23.41	35.15	36.68	19.74
Merged-chr9-7184536-3	chr9	7184443	7184643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357483)	promoter-TSS (NM_001357483)	38.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	96.1	89.29	64.46	63.15	81.0	124.49	83.37	84.22	160.69	143.1	187.43	74.56
Merged-chr7-101608064-3	chr7	101607990	101608190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26929.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	115.08	111.93	128.35	121.87	135.82	173.09	104.63	133.57	155.38	131.55	130.65	86.77
Merged-chr16-76309350-3	chr16	76309250	76309450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	63699.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	18.17	6.04	39.36	26.55	21.68	20.38	28.23	41.13	18.88	7.53	20.6	15.35
Merged-chr3-103213710-3	chr3	103213614	103213814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	42059.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	29.07	32.2	39.93	20.51	49.09	46.72	50.16	34.6	54.29	57.74	104.52	47.3
Merged-chr19-37439465-2	chr19	37439363	37439563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008245, intron 3 of 3)	intron (NM_008245, intron 3 of 3)	4622.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	27.46	28.17	46.21	36.6	27.41	20.7	27.24	26.02	10.23	0.0	2.01	4.7
Merged-chr8-70777269-3	chr8	70777178	70777378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	416.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	62.99	55.08	74.16	44.24	72.41	72.75	34.55	63.79	101.88	91.89	93.96	49.5
Merged-chr16-92675872-3	chr16	92675772	92675972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	21457.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	67.43	41.25	54.19	64.75	57.68	63.66	37.54	67.88	62.55	85.36	78.89	46.36
Merged-chr8-92840046-3	chr8	92839947	92840147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008610, intron 8 of 12)	intron (NM_008610, intron 8 of 12)	12750.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	32.3	22.89	57.62	26.55	42.96	50.17	42.85	54.0	66.48	51.21	65.83	40.72
Merged-chr5-142938518-2	chr5	142938429	142938629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21826.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	12.11	14.34	8.56	8.04	14.73	27.28	4.65	12.79	14.75	7.03	6.03	3.13
Merged-chr15-62152352-3	chr15	62152244	62152444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	67107.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	82.37	53.83	83.86	71.59	73.64	98.15	69.42	96.67	103.26	91.38	123.61	62.34
Merged-chr7-16910134-3	chr7	16910042	16910242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	3652.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	35.53	45.02	64.46	47.86	41.73	70.55	46.84	70.51	28.72	42.18	97.48	32.89
Merged-chr13-80885634-3	chr13	80885542	80885742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	-453.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	133.25	133.56	134.06	108.19	177.14	168.7	108.95	161.55	193.54	192.81	211.55	138.15
Merged-chr16-52060532-3	chr16	52060420	52060620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28971.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	237.84	220.34	212.78	201.9	243.01	322.04	212.92	266.13	337.52	278.67	348.72	170.42
Merged-chr3-144700149-3	chr3	144700050	144700250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 6 of 10)	intron (NM_001282037, intron 6 of 10)	20185.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	44.01	28.93	35.37	47.46	36.41	49.23	33.88	42.79	45.63	37.66	66.33	33.52
Merged-chr5-108660793-3	chr5	108660708	108660908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199011)	promoter-TSS (NM_199011)	22.0	NM_001357029	110524.0	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	48.86	51.81	47.35	59.93	72.41	86.23	46.84	76.93	97.95	69.29	113.06	46.99
Merged-chr6-72835336-1	chr6	72835236	72835436	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46291.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	2.02	0.25	0.0	0.4	15.14	15.68	4.32	2.72	2.16	3.01	0.0	1.25
Merged-chr10-112928963-3	chr10	112928824	112929024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033474, exon 1 of 1)	5' UTR (NM_001033474, exon 1 of 1)	102.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	79.55	97.59	63.32	106.58	100.23	105.05	126.56	125.3	111.13	118.5	151.75	86.15
Merged-chr6-18848550-3	chr6	18848429	18848629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-106.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	202.71	173.81	198.52	222.42	181.23	220.76	178.38	221.5	284.61	278.67	376.36	147.24
Merged-chr5-24842783-3	chr5	24842685	24842885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-424.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	268.12	278.94	306.34	309.69	315.01	329.88	273.71	287.27	397.51	414.74	474.85	246.85
Merged-chr14-77795442-3	chr14	77795345	77795545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033440, intron 2 of 2)	intron (NM_001033440, intron 2 of 2)	3523.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	69.45	60.87	73.02	92.91	97.37	82.16	72.08	94.46	134.14	173.73	145.22	76.44
Merged-chr14-73325934-3	chr14	73325845	73326045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-123.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	35.94	32.7	51.34	10.86	40.5	46.41	20.26	36.22	46.22	56.74	68.34	23.18
Merged-chr11-93885261-3	chr11	93885167	93885367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	499.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	22.21	35.47	13.12	20.91	28.64	23.52	15.28	23.55	28.13	36.65	27.13	24.75
Merged-chr16-10416277-3	chr16	10416178	10416378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	4340.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	54.11	55.59	52.48	32.58	30.27	76.2	28.23	41.05	50.75	38.16	55.78	25.69
Merged-chr17-70990599-3	chr17	70990521	70990721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-105.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	34.73	48.54	33.66	51.48	32.32	55.19	68.43	33.0	44.45	58.24	57.28	41.66
Merged-chr13-41097843-3	chr13	41097763	41097963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12125.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	25.44	18.11	25.1	22.52	33.14	32.93	33.22	39.84	35.01	33.14	32.66	18.8
Merged-chr10-20104606-3	chr10	20104464	20104664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-44356.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	109.83	105.64	106.1	88.48	148.91	164.94	88.69	117.7	155.58	180.76	142.71	81.76
Merged-chr1-74397480-3	chr1	74397383	74397583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153088)	TTS (NM_153088)	3173.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	209.57	237.69	242.44	223.62	231.55	233.3	199.3	222.76	253.92	283.69	375.86	191.72
Merged-chr12-70111973-3	chr12	70111882	70112082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	53.0	NM_001286080	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	40.38	46.03	28.52	39.82	41.73	31.04	35.87	43.21	36.19	34.65	63.31	31.64
Merged-chr3-96579929-2	chr3	96579840	96580040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027241, intron 6 of 7)	intron (NM_027241, intron 6 of 7)	-13139.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	21.8	12.32	15.4	8.85	12.68	8.78	10.96	17.69	21.44	19.58	21.1	13.78
Merged-chr11-120151363-3	chr11	120151268	120151468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164799)	promoter-TSS (NM_001164799)	-17.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	144.56	145.38	184.83	176.16	185.73	195.36	107.62	127.6	175.25	221.43	204.01	98.68
Merged-chr11-69685402-3	chr11	69685301	69685501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011614)	TTS (NM_011614)	153.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	23.82	9.81	33.09	23.73	33.14	34.81	24.58	35.16	37.76	24.6	38.19	29.45
Merged-chr4-136147027-3	chr4	136146917	136147117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3195.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	24.23	24.9	25.67	23.73	29.46	28.22	26.24	25.63	37.37	36.15	50.75	32.58
Merged-chr11-106500845-3	chr11	106500735	106500935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030703)	promoter-TSS (NR_030703)	-156.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	135.68	124.76	107.25	77.22	116.59	190.97	78.72	98.36	147.91	188.79	164.81	74.24
Merged-chr3-21934955-3	chr3	21934856	21935056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141696.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	38.76	35.72	42.21	55.91	40.91	42.96	32.88	58.88	59.2	58.75	67.84	31.64
Merged-chr9-21149954-3	chr9	21149850	21150050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016742)	promoter-TSS (NM_016742)	-44.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	54.51	53.58	57.05	57.51	87.55	92.19	49.49	57.34	71.99	85.86	98.49	44.8
Merged-chr2-15055151-3	chr2	15055047	15055247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-215.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	251.56	232.66	266.97	248.56	240.96	338.03	213.92	280.68	307.03	321.35	446.71	195.48
Merged-chr3-65929987-3	chr3	65929880	65930080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28269.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	48.86	48.54	55.33	32.18	49.91	94.07	62.45	52.91	70.41	96.91	88.44	26.0
Merged-chr10-98896214-3	chr10	98896112	98896312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18430.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	22.61	12.58	25.67	22.93	17.59	18.19	16.28	26.8	34.42	29.62	55.78	20.36
Merged-chr13-107890172-3	chr13	107890065	107890265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145456)	promoter-TSS (NM_145456)	-101.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	316.17	285.23	286.37	233.68	304.78	322.67	249.79	246.39	324.93	337.92	441.68	203.0
Merged-chr1-44070370-3	chr1	44070268	44070468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32073.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	23.02	16.85	26.24	41.83	29.46	23.2	29.23	51.5	28.72	29.62	42.71	27.88
Merged-chr17-24724434-3	chr17	24724333	24724533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026684)	promoter-TSS (NM_026684)	-45.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	50.88	36.47	46.21	30.57	47.05	60.52	34.21	28.57	76.51	70.8	70.35	36.03
Merged-chr15-74919740-2	chr15	74919663	74919863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35288.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	14.54	12.58	17.11	6.44	6.55	11.6	5.98	3.14	12.98	16.57	8.54	5.64
Merged-chr2-32713169-6	chr2	32713044	32713244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130860)	promoter-TSS (NM_130860)	-172.0	NR_039536	100628606.0		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	44.01	30.43	40.5	51.88	38.46	40.45	38.86	33.87	64.71	78.83	78.89	55.45
Merged-chr10-78086769-3	chr10	78086678	78086878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17410.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	61.78	36.97	81.58	79.64	52.77	59.89	65.44	55.4	70.41	48.2	79.89	52.0
Merged-chr8-40307890-3	chr8	40307737	40307937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	92.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	46.84	75.21	67.88	87.28	94.91	90.94	138.18	94.99	85.56	89.37	117.58	61.4
Merged-chr19-12024355-3	chr19	12024240	12024440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12400.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	38.36	23.14	37.65	42.23	40.5	30.73	24.58	42.22	44.84	37.16	69.85	27.57
Merged-chr5-62846934-3	chr5	62846836	62847036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33113.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	60.17	34.46	64.46	79.64	71.18	66.48	61.45	72.31	58.02	39.67	57.79	24.43
Merged-chrX-101332599-3	chrX	101332482	101332682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33403.0	NM_172932	245537.0	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3|NLG3	neuroligin 3	protein-coding	121.14	103.88	141.47	111.01	124.37	157.1	107.29	125.69	163.05	153.64	169.84	86.15
Merged-chr17-37046025-3	chr17	37045967	37046167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019439, exon 1 of 23)	5' UTR (NM_019439, exon 1 of 23)	101.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	44.01	36.72	28.52	45.05	24.96	23.52	25.91	22.91	27.34	28.12	40.7	16.6
Merged-chr15-84321764-3	chr15	84321668	84321868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2952.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	20.19	23.14	18.25	22.12	38.05	27.91	44.18	53.86	35.4	33.14	36.18	26.94
Merged-chr18-56466638-3	chr18	56466538	56466738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	34506.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	29.07	37.48	29.66	44.24	31.09	25.09	21.92	40.07	45.83	24.6	34.67	20.05
Merged-chr2-6251326-3	chr2	6251232	6251432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 2 of 6)	intron (NR_040333, intron 2 of 6)	-38338.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	21.0	19.12	23.39	22.93	34.36	26.65	26.57	32.55	36.39	29.12	20.6	21.62
Merged-chr8-115420280-3	chr8	115420194	115420394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	286600.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	19.38	10.06	26.24	18.9	18.82	16.62	13.29	17.66	29.31	25.11	24.62	22.24
Merged-chr9-66834849-3	chr9	66834735	66834935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-129.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	233.8	225.87	270.97	209.95	254.05	312.0	159.44	218.22	284.02	323.86	321.09	167.91
Merged-chr5-140749712-3	chr5	140749606	140749806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	25579.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	35.94	40.24	37.65	31.77	37.64	63.97	19.93	37.71	33.83	34.65	50.25	31.33
Merged-chr7-117486667-3	chr7	117486570	117486770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	105691.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	28.67	32.95	46.21	31.37	37.64	48.6	33.22	42.79	47.01	23.1	25.63	26.31
Merged-chr11-94412681-1	chr11	94412581	94412781	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-19705.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	2.02	0.5	1.14	0.0	4.91	3.76	7.97	7.85	3.34	1.0	3.52	6.89
Merged-chr1-180601938-3	chr1	180601845	180602045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007415)	TTS (NM_007415)	14744.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	24.23	19.62	35.94	27.75	35.59	33.24	26.91	54.42	32.26	24.6	42.21	17.86
Merged-chr1-156028542-3	chr1	156028411	156028611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	6306.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	32.3	34.21	50.2	45.05	55.23	68.99	47.17	60.17	49.96	65.27	66.33	41.66
Merged-chr10-94122758-3	chr10	94122651	94122851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25180.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	28.67	32.7	45.64	45.85	35.18	32.3	37.87	68.38	70.22	43.18	57.28	35.09
Merged-chr2-60821848-3	chr2	60821757	60821957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59581.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	127.6	77.72	130.06	95.72	108.41	96.89	100.32	130.46	121.75	106.45	129.64	81.45
Merged-chr6-89413750-3	chr6	89413639	89413839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-51126.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	32.3	47.04	59.33	24.53	38.46	64.6	20.26	20.22	56.45	61.76	51.76	25.06
Merged-chr2-102401114-3	chr2	102401019	102401219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-219.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	34.73	43.26	43.35	28.15	40.91	39.2	25.91	40.74	35.8	34.14	48.74	24.43
Merged-chr3-136331319-3	chr3	136331218	136331418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5252.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	104.18	84.76	87.28	104.17	85.09	106.3	97.66	115.29	116.64	96.4	123.11	61.09
Merged-chr9-40782188-3	chr9	40782107	40782307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19066.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	75.51	45.53	74.16	64.75	70.77	65.22	35.54	57.14	62.94	53.73	98.99	48.56
Merged-chr17-50504679-3	chr17	50504574	50504774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4873.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	56.94	49.55	74.16	78.83	71.59	62.71	36.21	60.62	59.01	74.81	59.8	48.24
Merged-chr7-19257545-3	chr7	19257455	19257655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104069, exon 11 of 11)	non-coding (NR_104069, exon 11 of 11)	14299.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	34.73	22.39	37.08	24.13	30.68	48.92	29.56	23.94	59.01	43.18	52.26	26.63
Merged-chr11-87086802-3	chr11	87086693	87086893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-16.0	NM_024262	74133.0	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	51.28	26.66	58.19	44.64	63.82	55.19	31.22	48.06	57.63	37.16	55.78	31.95
Merged-chr11-59228243-3	chr11	59228115	59228315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	52.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	79.14	90.8	80.43	76.42	69.55	92.5	50.49	52.01	90.28	131.55	121.1	70.8
Merged-chr8-25007980-3	chr8	25007882	25008082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	8940.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	41.19	31.69	31.95	16.89	30.68	40.14	25.91	32.38	38.16	31.63	31.15	15.04
Merged-chr10-53348500-3	chr10	53348383	53348583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001204983, exon 3 of 13)	exon (NM_001204983, exon 3 of 13)	10797.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	24.23	19.62	25.1	25.74	30.27	28.54	16.94	32.75	28.91	17.07	35.17	15.35
Merged-chr1-106553042-3	chr1	106552947	106553147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-6416.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	43.21	49.8	40.5	45.85	50.32	37.63	51.49	75.25	38.35	39.16	64.32	44.8
Merged-chr11-95842288-3	chr11	95842215	95842415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284397)	promoter-TSS (NM_001284397)	20.0	NM_001284393	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	39.57	29.93	50.2	31.37	48.68	63.03	35.21	41.33	47.01	40.67	44.22	19.42
Merged-chr8-105566089-3	chr8	105565994	105566194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-30.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	192.21	186.13	144.33	161.68	208.64	206.33	118.92	150.42	220.68	255.07	264.31	122.49
Merged-chr7-24254683-3	chr7	24254601	24254801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018791)	promoter-TSS (NM_018791)	-93.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	23.82	16.35	25.67	22.12	21.68	36.37	27.57	49.49	41.11	34.65	63.82	34.46
Merged-chr9-7221644-3	chr9	7221557	7221757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37152.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	158.29	172.8	175.13	223.62	162.41	194.42	160.77	202.29	211.64	188.79	208.03	108.39
Merged-chr19-42089386-3	chr19	42089293	42089493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1042.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	31.09	19.62	22.25	35.8	29.86	25.71	25.24	41.89	30.29	38.16	44.72	35.09
Merged-chr3-69156638-3	chr3	69156526	69156726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	25393.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	63.8	84.76	92.98	90.49	99.82	130.13	62.12	110.08	117.62	90.38	215.06	72.68
Merged-chr12-40222662-3	chr12	40222524	40222724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045157)	promoter-TSS (NR_045157)	187.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	150.21	169.53	151.74	156.05	165.69	192.85	197.64	161.16	189.8	210.88	205.01	127.81
Merged-chr10-80695365-3	chr10	80695280	80695480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	6440.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	118.31	107.15	130.63	133.93	155.46	151.77	96.0	183.25	155.78	141.59	205.52	107.14
Merged-chr1-53785213-3	chr1	53785121	53785321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133810)	promoter-TSS (NM_133810)	-6.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	121.95	141.11	115.8	143.18	108.0	105.36	97.33	127.07	159.91	152.64	196.97	100.25
Merged-chr8-117339596-3	chr8	117339471	117339671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-9599.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	59.36	39.49	55.9	30.97	53.18	65.22	42.19	51.98	102.67	93.89	83.41	42.6
Merged-chr8-126828235-3	chr8	126828103	126828303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20817.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	39.57	59.61	34.23	45.85	58.91	70.55	47.17	54.06	65.5	60.75	47.23	41.35
Merged-chr1-172277340-3	chr1	172277232	172277432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178405, intron 20 of 22)	intron (NM_178405, intron 20 of 22)	-18908.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	68.65	61.37	106.68	94.92	77.32	61.46	79.39	90.67	47.21	33.64	68.84	37.28
Merged-chr13-89384833-3	chr13	89384729	89384929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-155807.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	97.31	108.91	78.15	131.52	43.77	40.14	43.18	33.06	197.08	172.22	183.41	101.81
Merged-chr8-88362160-3	chr8	88362049	88362249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	42.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	61.38	73.19	77.58	61.94	38.86	48.29	54.81	42.2	72.18	55.73	76.88	48.24
Merged-chr2-90847152-3	chr2	90847055	90847255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	0.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	115.08	109.92	139.76	98.54	92.46	202.57	101.64	92.5	149.48	157.16	170.34	86.77
Merged-chr5-122644361-3	chr5	122644266	122644466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	455.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	39.98	21.63	41.07	24.53	32.73	34.81	41.19	33.2	25.57	21.09	27.13	13.47
Merged-chr2-102186374-3	chr2	102186272	102186472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290784)	promoter-TSS (NM_001290784)	88.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	26.65	15.85	21.68	30.16	56.46	54.25	46.17	76.91	25.77	45.69	66.33	39.47
Merged-chr15-25269842-3	chr15	25269750	25269950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143914.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	192.61	147.9	143.76	157.26	187.37	264.03	183.03	184.21	280.87	300.76	311.04	169.16
Merged-chr13-67194523-3	chr13	67194426	67194626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	20.0	NM_001048204	218311.0	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	25.04	30.94	30.23	36.6	52.37	34.81	44.84	37.51	86.74	47.7	107.03	35.4
Merged-chr1-60913178-3	chr1	60913087	60913287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281976, intron 2 of 2)	intron (NM_001281976, intron 2 of 2)	4162.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	50.07	26.91	52.48	33.38	29.05	27.28	22.92	24.64	30.29	30.13	38.19	19.74
Merged-chr2-170184768-3	chr2	170184675	170184875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42100.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	54.92	51.56	94.13	61.94	73.64	52.68	40.86	59.44	73.36	71.3	77.38	47.93
Merged-chr7-121075107-3	chr7	121074995	121075195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-565.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	46.44	40.24	57.05	34.59	54.82	63.03	63.11	65.33	71.2	81.34	77.88	46.05
Merged-chr10-41809662-3	chr10	41809569	41809769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-6.0	NM_029132	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	27.46	30.18	26.81	34.59	25.77	35.75	18.27	25.82	44.84	30.13	59.8	20.36
Merged-chr5-100038559-3	chr5	100038513	100038713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152866, intron 1 of 8)	CpG	609.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	22.21	34.96	29.66	29.76	22.09	38.57	36.21	28.96	44.84	36.15	40.7	31.64
Merged-chrX-159737563-3	chrX	159737464	159737664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	L1MA6|LINE|L1	28963.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	41.59	42.01	35.37	37.81	35.59	60.21	45.84	56.66	51.34	50.21	86.43	35.09
Merged-chr4-57952563-3	chr4	57952513	57952713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3798.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	47.65	41.25	30.8	46.25	58.5	74.0	48.5	52.49	65.1	57.74	69.85	27.57
Merged-chr18-68194636-3	chr18	68194535	68194735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-33311.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	81.97	63.64	79.86	113.42	101.05	115.08	86.7	107.3	109.75	91.89	172.85	68.92
Merged-chr1-86440718-3	chr1	86440616	86440816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14387.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	36.34	32.95	30.8	35.39	43.77	48.29	14.62	30.0	48.19	55.73	65.32	32.89
Merged-chr17-17865381-3	chr17	17865275	17865475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10187.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	75.51	76.97	88.99	72.8	93.68	84.35	61.12	75.03	96.97	75.32	95.47	57.01
Merged-chr15-78928254-3	chr15	78928162	78928362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008495, intron 2 of 3)	intron (NM_008495, intron 2 of 3)	1537.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	69.05	47.54	41.07	28.96	66.27	67.1	41.19	58.29	40.91	48.7	32.16	24.75
Merged-chr16-62847079-3	chr16	62846987	62847187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-47.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	255.6	253.29	245.3	233.28	270.83	296.95	213.25	321.95	364.46	325.87	451.73	190.78
Merged-chr15-7134752-1	chr15	7134652	7134852	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	5180.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.23	5.03	2.28	3.22	3.27	3.14	8.3	6.7	5.9	8.54	4.52	9.08
Merged-chr17-73027304-3	chr17	73027200	73027400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80685.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	37.55	20.88	34.23	68.78	49.91	42.33	54.14	68.41	55.07	30.13	50.75	30.39
Merged-chr16-25053086-3	chr16	25052968	25053168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6571.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	72.28	70.43	96.41	93.71	91.64	79.02	69.09	103.43	65.69	59.75	74.87	39.47
Merged-chr2-170325423-3	chr2	170325328	170325528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30933.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	45.23	31.94	49.63	46.66	20.05	14.74	35.87	40.71	35.4	19.58	52.76	28.19
Merged-chrX-36796412-3	chrX	36796315	36796515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007451, intron 1 of 3)	CpG	818.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	59.36	49.8	34.23	62.34	72.41	52.37	59.46	70.79	66.48	92.39	104.01	58.27
Merged-chr2-170511339-4	chr2	170511273	170511473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040367, exon 1 of 3)	non-coding (NR_040367, exon 1 of 3)	143.0	NM_001199902	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	18.98	29.93	21.68	22.12	24.96	20.7	27.24	18.62	24.59	38.66	21.1	19.74
Merged-chr10-7833795-3	chr10	7833680	7833880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1310.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	37.55	44.02	61.61	43.84	36.41	60.21	36.21	49.54	32.06	34.14	31.15	23.81
Merged-chr1-165675325-3	chr1	165675219	165675419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	32775.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	168.79	186.38	154.02	158.87	139.91	254.31	138.85	177.34	166.4	194.31	198.48	105.26
Merged-chr4-40840623-3	chr4	40840513	40840713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	9525.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	65.01	54.83	77.01	86.47	83.05	69.61	54.48	72.84	68.45	54.73	75.87	51.06
Merged-chr13-23769209-3	chr13	23769110	23769310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5542.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	33.92	26.16	33.09	35.39	38.46	27.59	17.94	39.2	31.27	29.12	49.75	32.58
Merged-chr7-4149379-3	chr7	4149270	4149470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175529, exon 1 of 1)	exon (NM_175529, exon 1 of 1)	502.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	46.44	54.08	32.52	44.64	34.36	41.08	47.83	44.38	40.71	50.71	72.36	43.54
Merged-chr12-69228073-3	chr12	69227993	69228193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011133)	promoter-TSS (NM_011133)	97.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	31.09	35.21	22.82	37.0	51.55	51.11	31.56	32.24	23.21	34.65	27.64	15.66
Merged-chr6-125215519-3	chr6	125215418	125215618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-63.0	NM_001080557	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	124.37	131.55	138.05	111.81	142.78	136.09	82.38	93.62	121.75	159.67	149.24	88.65
Merged-chr1-106796738-3	chr1	106796689	106796889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-64.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	161.52	158.46	136.34	135.14	162.82	195.04	117.92	137.33	175.05	189.8	165.32	93.67
Merged-chr6-88053904-3	chr6	88053808	88054008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8638.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	18.57	28.17	29.66	29.76	20.46	40.45	26.24	33.22	24.19	17.07	43.21	14.41
Merged-chr6-57581008-3	chr6	57580905	57581105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025992)	promoter-TSS (NM_025992)	13.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	48.46	58.61	51.34	52.69	41.73	72.75	51.49	66.5	83.59	84.35	99.49	34.15
Merged-chr12-100084439-3	chr12	100084341	100084541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27890.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	52.49	27.42	88.42	67.57	88.78	73.38	135.53	126.25	119.0	98.91	220.09	61.71
Merged-chr19-32182022-3	chr19	32181926	32182126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	28987.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	49.26	28.42	28.52	25.34	61.37	86.23	76.73	53.66	34.42	33.64	46.23	18.17
Merged-chr7-119899552-3	chr7	119899446	119899646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126475)	promoter-TSS (NR_126475)	-565.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	37.96	40.75	26.81	39.82	23.73	30.73	33.55	38.33	47.8	36.15	42.71	36.34
Merged-chr1-171281766-3	chr1	171281663	171281863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-577.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	32.3	29.43	15.4	29.76	24.96	24.77	22.92	19.15	20.46	26.61	40.2	18.8
Merged-chr17-55721502-3	chr17	55721426	55721626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8890.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	53.7	51.56	61.04	74.0	64.23	127.0	60.12	56.61	41.7	47.7	37.69	16.6
Merged-chr11-79963522-3	chr11	79963426	79963626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1139.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	19.38	22.13	29.66	26.95	19.64	20.38	12.62	23.33	24.19	34.65	30.65	20.99
Merged-chr14-23825136-3	chr14	23825038	23825238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	179067.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	47.24	52.07	75.3	69.98	56.87	48.29	57.8	90.87	54.88	39.16	58.29	53.57
Merged-chr4-59465641-3	chr4	59465536	59465736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27003.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	20.59	17.86	39.93	24.94	24.14	24.15	24.58	39.81	18.49	27.62	31.66	15.66
Merged-chrX-71816716-3	chrX	71816644	71816844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290780)	promoter-TSS (NM_001290780)	-14.0	NM_001081356	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	49.67	67.41	59.33	50.27	87.14	90.94	58.13	73.01	102.67	136.57	121.6	60.46
Merged-chr10-117684894-3	chr10	117684790	117684990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027468, exon 9 of 9)	3' UTR (NM_027468, exon 9 of 9)	25868.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	24.63	16.85	26.24	41.83	36.82	30.1	34.88	56.38	43.07	32.13	23.62	26.94
Merged-chr11-8689725-3	chr11	8689623	8689823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25188.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	49.67	42.01	43.93	34.99	80.18	82.16	54.48	58.63	27.93	27.62	28.64	21.62
Merged-chr7-123368866-3	chr7	123368771	123368971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1044.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	21.0	24.65	31.38	16.89	22.5	27.91	11.96	23.89	30.29	25.11	34.67	21.3
Merged-chr13-62015890-2	chr13	62015789	62015989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114001.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	15.34	9.81	19.97	11.66	0.0	0.0	0.0	0.0	36.19	25.61	47.74	25.06
Merged-chr13-91681259-3	chr13	91681160	91681360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-60261.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	33.92	48.8	79.29	48.67	33.14	33.24	30.23	40.91	67.86	60.25	94.47	38.53
Merged-chr4-32571663-3	chr4	32571551	32571751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	11.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	35.53	17.36	57.62	37.4	56.46	44.21	71.75	99.65	36.58	26.61	38.69	40.72
Merged-chr10-70224812-3	chr10	70224727	70224927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20163.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	33.92	18.36	23.39	38.61	23.73	28.85	37.87	41.55	30.29	38.66	37.69	25.06
Merged-chr14-55722221-3	chr14	55722103	55722303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	-1.0	NM_001360388	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	32.3	30.94	27.38	48.26	24.55	40.45	35.54	22.29	31.08	38.16	37.18	21.3
Merged-chr7-80025207-3	chr7	80025109	80025309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145999, intron 1 of 4)	CpG	395.0	NM_001146000	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	48.46	59.11	56.48	53.09	59.73	48.92	30.23	64.23	54.09	60.75	67.84	48.24
Merged-chr1-156468777-3	chr1	156468673	156468873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	5555.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	27.46	15.85	21.11	19.71	24.55	27.59	25.58	31.91	35.8	28.12	47.74	33.52
Merged-chrX-38461081-3	chrX	38460962	38461162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4602.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	14.94	18.86	37.08	29.76	37.23	20.7	21.59	24.11	27.14	33.64	32.16	19.42
Merged-chr17-34124818-3	chr17	34124709	34124909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-709.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	23.82	26.41	36.51	26.95	36.41	50.17	19.6	22.71	38.94	26.11	34.67	17.23
Merged-chr19-41771926-1	chr19	41771826	41772026	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163495, intron 10 of 10)	intron (NM_001163495, intron 10 of 10)	24965.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.0	0.5	3.42	1.61	4.91	0.31	1.66	1.71	33.44	28.12	34.17	21.62
Merged-chr11-101008793-3	chr11	101008686	101008886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-666.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	36.34	33.45	26.81	28.96	35.59	46.41	19.93	29.38	42.68	38.16	25.12	26.0
Merged-chr11-90227683-3	chr11	90227577	90227777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21799.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	23.42	16.1	27.38	23.33	37.23	27.91	34.55	49.77	32.26	31.63	58.29	20.05
Merged-chr8-13104914-3	chr8	13104817	13105017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	426.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	37.55	31.94	31.38	25.34	33.55	35.75	21.59	38.66	54.68	53.73	60.3	36.65
Merged-chr8-70645401-3	chr8	70645307	70645507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12951.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	38.76	59.11	63.89	51.88	16.77	32.93	32.88	49.82	75.13	50.21	94.47	76.44
Merged-chr7-47015877-3	chr7	47015785	47015985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-7471.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	30.28	25.15	34.8	45.45	55.64	46.41	49.16	46.6	57.04	33.14	89.94	21.62
Merged-chr4-47251292-3	chr4	47251141	47251341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 5 of 39)	intron (NM_009928, intron 5 of 39)	43229.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	33.52	26.41	20.54	21.72	49.91	32.3	23.25	25.32	24.0	19.58	27.13	16.29
Merged-chr15-82888618-3	chr15	82888514	82888714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114140, intron 1 of 5)	intron (NM_001114140, intron 1 of 5)	9847.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	48.05	44.27	37.08	48.67	59.73	50.8	26.57	49.88	60.38	63.77	49.75	17.23
Merged-chr11-101082443-5	chr11	101082351	101082551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305982)	promoter-TSS (NM_001305982)	-114.0	NM_001305982	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	34.73	20.37	15.4	19.31	29.86	42.02	26.57	21.03	36.39	40.67	34.17	27.25
Merged-chr16-18289377-3	chr16	18289280	18289480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033324)	promoter-TSS (NM_033324)	-212.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	209.17	227.13	251.57	242.53	256.92	287.23	217.57	241.32	253.33	264.61	386.41	180.75
Merged-chrX-37067480-3	chrX	37067371	37067571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15562.0	NR_002900	104369.0	Mm.453531	NR_002900	ENSMUSG00000065642	Snora69	MBI-134|Rnu69	small nucleolar RNA, H/ACA box 69	snoRNA	20.59	31.69	30.8	18.1	27.41	28.54	22.92	36.08	31.08	21.59	20.6	12.22
Merged-chr13-34002567-6	chr13	34002495	34002695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	199.0	NM_001243192	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	39.57	40.24	42.78	38.21	24.55	29.48	42.52	41.75	37.57	61.76	46.73	36.03
Merged-chr2-28401876-3	chr2	28401777	28401977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46064.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	25.84	14.84	37.65	27.75	20.86	29.48	20.26	22.01	30.49	24.6	25.63	23.49
Merged-chr5-120749896-3	chr5	120749801	120750001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145227)	promoter-TSS (NM_145227)	-53.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	30.69	38.23	53.62	43.84	35.18	50.17	40.86	54.59	51.93	39.67	67.33	38.22
Merged-chr7-122067152-3	chr7	122067073	122067273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138589)	promoter-TSS (NM_138589)	-25.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	116.29	88.03	121.51	86.07	93.28	137.97	77.4	89.16	132.96	113.48	115.57	103.06
Merged-chr14-67888197-3	chr14	67888083	67888283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	MIR3|SINE|MIR	-28438.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	21.0	15.85	27.38	17.7	36.0	19.76	11.63	21.84	67.86	45.19	78.39	48.56
Merged-chr11-72490054-3	chr11	72489955	72490155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153060)	promoter-TSS (NM_153060)	-135.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	47.65	38.74	29.66	26.14	43.77	40.76	25.24	39.31	50.16	31.13	66.83	24.12
Merged-chr10-115250559-3	chr10	115250461	115250661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	932.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	38.76	28.93	17.11	18.9	38.46	37.0	21.92	46.29	31.67	36.65	51.76	36.03
Merged-chr8-126591686-3	chr8	126591575	126591775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	1761.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	41.99	36.47	76.44	63.55	65.46	85.61	52.15	67.21	73.36	69.29	111.05	46.99
Merged-chr7-67425849-3	chr7	67425761	67425961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53003.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	65.41	45.02	46.21	52.29	87.14	105.36	75.73	116.75	83.0	87.87	126.63	53.88
Merged-chr15-38245042-3	chr15	38244931	38245131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	25828.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	50.88	32.95	57.05	51.08	73.64	57.07	36.87	74.08	90.08	89.37	117.08	43.86
Merged-chr3-89772782-3	chr3	89772705	89772905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	595.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	19.38	11.07	18.83	12.07	13.5	26.65	15.61	16.82	21.44	26.11	20.1	12.53
Merged-chr7-66140347-3	chr7	66140261	66140461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	L1MC3|LINE|L1	30846.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	45.23	42.51	38.79	32.58	69.55	46.72	25.91	35.8	46.81	49.21	57.28	39.16
Merged-chr11-79962435-3	chr11	79962321	79962521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144826)	promoter-TSS (NM_144826)	-34.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	51.28	44.77	58.76	32.98	50.73	66.48	28.23	34.85	52.71	51.21	44.72	35.09
Merged-chr7-65644783-3	chr7	65644680	65644880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-118.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	122.75	147.65	110.67	131.52	168.55	200.69	137.85	166.63	190.59	203.85	247.72	109.64
Merged-chr10-10481342-3	chr10	10481245	10481445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9031.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	20.19	19.87	58.19	28.15	41.73	22.58	33.88	28.85	29.7	19.08	31.66	15.04
Merged-chr4-41740989-3	chr4	41740882	41741082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286605, intron 1 of 3)	CpG-9828	377.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	31.5	31.19	26.81	56.71	47.46	54.25	36.87	48.06	46.42	29.62	80.4	25.06
Merged-chr6-29529209-3	chr6	29529090	29529290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-92.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	73.09	69.67	94.13	76.82	85.5	105.99	70.42	92.38	105.23	113.98	154.76	68.92
Merged-chr9-92270028-3	chr9	92269936	92270136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011636, intron 8 of 8)	intron (NM_011636, intron 8 of 8)	-2675.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	50.88	35.47	30.8	55.5	45.41	60.52	41.85	41.69	68.05	49.21	76.88	27.57
Merged-chr9-44604543-3	chr9	44604421	44604621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181324)	promoter-TSS (NM_181324)	-371.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	23.42	33.45	26.81	13.67	27.82	33.87	28.57	26.61	37.57	33.64	36.68	35.4
Merged-chr4-149340940-3	chr4	149340843	149341043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	6304.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	27.46	13.58	21.11	23.73	33.14	30.42	33.22	37.04	25.57	21.59	31.66	19.11
Merged-chrX-103980734-3	chrX	103980635	103980835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358205, intron 1 of 4)	CpG	550.0	NM_001358205	19820.0	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	20.19	21.63	17.11	27.75	21.27	36.69	30.89	33.7	33.24	33.64	55.27	20.99
Merged-chr8-70833258-4	chr8	70833152	70833352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6468.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	35.53	59.36	38.22	25.34	47.87	83.41	31.56	36.0	50.94	54.23	46.23	31.01
Merged-chr13-60619832-3	chr13	60619734	60619934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	17623.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	15.75	14.59	35.37	17.29	35.59	31.36	22.59	21.62	30.29	18.58	21.61	13.78
Merged-chr16-4683994-3	chr16	4683896	4684096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-74.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	54.92	84.76	45.64	71.19	63.0	75.57	77.73	52.77	82.81	94.9	78.89	48.56
Merged-chrX-100494214-3	chrX	100494114	100494314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008784)	promoter-TSS (NM_008784)	-77.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	67.84	105.64	78.15	95.72	116.19	106.93	109.62	112.68	123.13	105.44	125.12	72.68
Merged-chr10-92722400-3	chr10	92722314	92722514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	4.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	100.95	83.0	115.23	127.9	122.73	150.2	87.03	178.8	155.19	162.68	252.25	90.85
Merged-chr5-36726572-3	chr5	36726471	36726671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22108.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	49.67	74.45	71.88	66.36	76.5	80.59	62.45	69.98	84.77	78.83	85.42	57.33
Merged-chr6-72439569-3	chr6	72439434	72439634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	24.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	185.34	172.8	74.16	86.47	118.23	239.26	69.42	70.07	184.49	174.73	137.18	70.17
Merged-chr15-93405722-3	chr15	93405557	93405757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358749, intron 2 of 8)	intron (NM_001358749, intron 2 of 8)	7193.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	21.0	16.1	18.83	12.07	10.64	25.4	12.95	12.79	24.59	21.59	23.11	12.22
Merged-chr10-37236115-3	chr10	37236013	37236213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97187.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	58.15	47.29	58.19	70.38	54.41	50.49	59.13	60.25	59.2	51.72	41.2	21.62
Merged-chr6-54117287-4	chr6	54117162	54117362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	77330.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	48.86	54.83	58.19	63.95	42.96	57.7	52.82	51.9	56.06	55.73	63.31	49.18
Merged-chr7-141266073-2	chr7	141265943	141266143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001252600, exon 2 of 9)	5' UTR (NM_001252600, exon 2 of 9)	381.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	19.38	17.1	29.66	24.13	21.27	23.2	21.26	18.76	39.34	33.14	26.63	27.25
Merged-chr2-33431515-3	chr2	33431408	33431608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276332)	promoter-TSS (NM_001276332)	-184.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	28.67	23.64	30.8	30.57	22.91	36.69	38.86	22.68	26.16	35.15	29.14	14.41
Merged-chr5-105582465-4	chr5	105582370	105582570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	62999.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	10.9	22.89	16.54	17.7	20.46	32.3	36.87	22.21	29.9	30.63	26.63	31.33
Merged-chr7-89270661-3	chr7	89270564	89270764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68123.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	16.15	20.63	29.66	23.73	32.73	24.46	12.95	43.04	23.8	32.64	36.18	16.29
Merged-chr17-50993836-3	chr17	50993739	50993939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	165539.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	102.56	105.14	124.93	153.64	134.6	128.88	104.3	157.77	128.24	149.63	171.35	97.74
Merged-chr17-23547357-3	chr17	23547252	23547452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3447.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	43.21	26.16	31.38	20.51	33.14	39.82	21.59	22.68	22.23	36.15	20.1	15.98
Merged-chr5-29947491-3	chr5	29947393	29947593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65621.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	23.42	23.14	17.11	20.91	29.05	27.59	19.93	14.05	36.58	33.64	26.13	16.6
Merged-chr15-96699025-3	chr15	96698935	96699135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355633, intron 1 of 14)	CpG	693.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	59.36	63.13	29.66	25.34	56.87	77.14	33.22	43.46	49.76	69.79	47.23	54.51
Merged-chr13-114834802-3	chr13	114834711	114834911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008396, exon 30 of 30)	3' UTR (NM_008396, exon 30 of 30)	16574.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	35.13	31.44	55.9	47.46	27.82	37.63	36.87	47.66	28.13	27.62	40.7	30.7
Merged-chr17-94750029-3	chr17	94749990	94750190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024720)	promoter-TSS (NR_024720)	-10.0	NR_024720	77022.0	Mm.440259	NR_024720	ENSMUSG00000098090	2700099C18Rik	9430041D22Rik	NDC80 homolog, kinetochore complex component pseudogene	pseudo	167.58	170.03	151.74	179.38	168.96	181.25	144.83	167.64	249.99	231.97	315.06	143.79
Merged-chr13-100835071-2	chr13	100834962	100835162	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1635.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.02	0.25	1.71	2.82	32.73	24.15	26.24	32.55	41.89	32.64	36.18	29.76
Merged-chr7-28436504-3	chr7	28436424	28436624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-333.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	273.37	279.45	318.89	305.27	322.37	362.49	223.55	285.73	378.82	395.66	549.21	243.72
Merged-chr17-29070799-3	chr17	29070709	29070909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	8317.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	49.26	36.47	42.78	48.26	55.23	77.14	63.78	62.38	51.53	56.74	63.31	22.87
Merged-chr16-33531368-3	chr16	33531280	33531480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12785.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	36.75	28.42	64.46	53.49	49.91	44.84	75.07	85.6	29.7	18.58	45.73	22.87
Merged-chrUn_JH584304-33210-1	chrUn_JH584304	33110	33310	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26479.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.77	16.07	16.58	20.36
Merged-chr13-60892977-3	chr13	60892885	60893085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	4462.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	27.05	35.97	49.63	35.39	40.91	21.32	22.26	40.26	51.53	20.59	47.74	19.74
Merged-chr1-59237291-3	chr1	59237202	59237402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-71.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	131.23	101.87	116.94	86.07	114.96	138.91	63.78	86.27	165.22	162.18	140.7	94.92
Merged-chr11-55113676-3	chr11	55113578	55113778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010299)	TTS (NM_010299)	15693.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	128.41	147.9	188.82	178.98	131.32	130.13	130.21	169.74	129.62	131.05	182.4	93.35
Merged-chr10-42678862-3	chr10	42678734	42678934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172416)	promoter-TSS (NM_172416)	-82.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	92.07	94.57	65.6	102.56	81.41	86.86	48.16	92.97	98.34	88.87	101.5	66.41
Merged-chr5-149229154-3	chr5	149229054	149229254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35850.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	115.08	103.13	108.39	120.26	137.46	104.73	77.06	96.7	111.33	150.13	190.94	71.42
Merged-chr10-95514991-3	chr10	95514896	95515096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080560)	promoter-TSS (NM_080560)	-166.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	184.13	153.68	189.96	180.99	247.51	228.28	179.37	213.48	194.33	239.5	232.65	147.86
Merged-chr7-137478471-3	chr7	137478369	137478569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40795.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	48.46	54.33	58.19	35.39	42.96	51.11	42.19	67.71	53.89	68.29	104.01	32.58
Merged-chr11-59163543-3	chr11	59163533	59163733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	112.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	69.86	79.99	63.32	92.1	77.32	78.71	93.01	55.71	84.97	103.43	90.95	65.16
Merged-chr17-13685840-3	chr17	13685739	13685939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74702.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	44.42	56.59	39.36	73.2	76.5	50.17	48.16	75.22	88.12	81.84	109.04	62.65
Merged-chr16-84583601-3	chr16	84583517	84583717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96172.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	86.82	90.05	90.7	82.05	58.5	83.72	60.46	56.1	166.59	159.67	148.73	72.68
Merged-chr8-46851793-3	chr8	46851694	46851894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112049.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	73.49	81.5	79.86	86.07	92.46	108.5	56.47	88.85	107.2	100.92	111.05	82.08
Merged-chr2-121413805-3	chr2	121413722	121413922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	-30.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	243.89	212.79	262.98	246.55	262.64	270.3	238.83	278.19	351.09	333.4	397.46	208.32
Merged-chr2-26315547-3	chr2	26315428	26315628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199146)	promoter-TSS (NM_001199146)	-5.0	NM_001199146	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	29.88	23.39	17.68	25.74	30.68	35.12	16.28	20.33	26.55	27.62	34.67	22.56
Merged-chr2-164917046-3	chr2	164916948	164917148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-5298.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	29.48	21.63	48.49	25.34	42.55	38.26	31.56	29.13	46.42	36.65	52.26	38.53
Merged-chr3-118081997-3	chr3	118081912	118082112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-213076.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	22.21	35.21	46.78	51.48	59.73	53.62	62.45	80.24	72.38	48.2	51.76	33.21
Merged-chr9-53384436-4	chr9	53384232	53384432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 1 of 7)	CpG	309.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	25.44	18.61	18.83	22.93	36.41	23.2	34.21	32.41	32.26	28.62	47.23	21.93
Merged-chr2-4554946-3	chr2	4554847	4555047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	(TTTTTG)n|Simple_repeat|Simple_repeat	-4807.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	36.34	29.18	41.07	20.11	35.59	29.48	18.27	34.21	31.47	32.13	52.76	26.63
Merged-chr16-49049428-3	chr16	49049324	49049524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8062.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	26.25	16.35	29.66	46.66	28.23	16.31	37.87	69.31	37.76	23.6	69.34	29.76
Merged-chr1-86417154-3	chr1	86417052	86417252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9177.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	62.59	41.0	81.0	55.5	65.87	69.3	55.8	78.08	73.95	58.24	109.04	49.81
Merged-chr16-4077790-3	chr16	4077671	4077871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026508)	promoter-TSS (NM_026508)	39.0	NR_152409	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	63.8	52.32	71.88	49.47	78.14	76.83	54.81	49.88	61.56	72.81	64.82	42.6
Merged-chr1-156066275-1	chr1	156066175	156066375	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25414.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	2.42	3.52	0.0	0.8	0.82	3.14	0.0	1.4	33.04	26.11	32.16	20.36
Merged-chr1-89454705-3	chr1	89454618	89454818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-93.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	120.73	108.91	153.45	164.5	155.05	150.51	124.56	193.77	184.89	168.21	249.23	114.66
Merged-chr2-154658063-3	chr2	154657956	154658156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	1030.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	81.97	73.7	87.85	64.35	68.73	98.78	48.5	81.36	107.98	123.02	138.18	68.92
Merged-chr14-20695169-5	chr14	20695079	20695279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168273)	TTS (NM_001168273)	211.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	7.27	21.38	27.38	18.5	27.82	20.7	23.25	22.29	18.49	19.08	30.15	25.37
Merged-chr10-91124072-3	chr10	91123959	91124159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133668)	promoter-TSS (NM_133668)	-96.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	157.48	126.27	176.84	187.83	200.87	239.88	135.86	189.81	250.78	245.03	296.97	161.65
Merged-chr9-61372337-3	chr9	61372295	61372495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	29.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	69.05	75.71	78.72	57.92	92.87	87.17	33.22	57.53	97.95	104.94	88.44	53.57
Merged-chr1-36270804-3	chr1	36270694	36270894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	2631.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	96.1	63.64	100.4	93.71	102.28	102.54	92.68	91.46	108.77	89.37	116.58	66.1
Merged-chr2-59435020-3	chr2	59434924	59435124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48342.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	18.17	18.11	27.38	22.93	18.82	35.12	23.58	45.34	29.11	34.14	33.67	22.87
Merged-chr3-88625040-2	chr3	88624940	88625140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	3646.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	23.02	15.85	30.8	35.8	29.46	31.98	21.59	19.12	7.47	4.02	14.07	5.01
Merged-chr6-136813328-2	chr6	136813222	136813422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_021714)	TTS (NM_021714)	5074.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	23.02	23.39	29.66	6.44	17.18	28.22	24.25	22.96	4.92	4.02	1.0	2.19
Merged-chr5-93093286-3	chr5	93093164	93093364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-152.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	60.17	89.54	62.75	83.66	84.28	90.0	95.0	76.09	60.97	80.84	75.87	57.95
Merged-chr6-121225128-3	chr6	121225013	121225213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	14379.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	38.36	38.23	55.9	41.43	55.64	37.0	50.16	58.4	76.91	65.27	88.94	32.89
Merged-chr3-107783491-3	chr3	107783393	107783593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23024.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	65.41	46.53	72.45	55.5	45.41	42.96	42.19	55.63	55.47	42.18	61.81	34.46
Merged-chr4-119965188-1	chr4	119965088	119965288	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150510.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.42	4.28	3.42	2.82	13.09	15.05	20.26	14.5	4.52	5.02	7.54	10.34
Merged-chr10-61146991-3	chr10	61146899	61147099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316674, intron 1 of 14)	(CAGCT)n|Simple_repeat|Simple_repeat	685.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	16.15	25.91	31.38	24.94	24.14	24.15	33.22	21.14	23.21	16.57	38.69	28.51
Merged-chr13-105293451-3	chr13	105293349	105293549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027934)	promoter-TSS (NM_027934)	-435.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	29.48	19.87	25.67	25.34	30.27	31.04	40.86	23.8	31.47	25.11	29.65	7.52
Merged-chr18-54918083-3	chr18	54917995	54918195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72085.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	38.36	40.75	43.93	45.45	69.96	51.11	36.21	67.4	77.1	63.77	116.07	50.12
Merged-chr18-73623281-3	chr18	73623186	73623386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	50581.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	18.57	18.61	35.37	20.91	22.09	24.77	21.59	32.5	32.26	28.62	47.74	18.8
Merged-chr7-4137149-5	chr7	4137042	4137242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033548)	promoter-TSS (NR_033548)	86.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	94.08	113.69	117.51	84.46	89.18	133.27	94.67	68.19	128.83	105.44	123.11	87.4
Merged-chr2-60881013-7	chr2	60880949	60881149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	CpG	389.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	26.65	50.31	29.66	15.69	36.41	38.88	24.25	22.74	44.45	39.16	43.21	23.18
Merged-chr7-128065779-3	chr7	128065675	128065875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 2 of 29)	Lx8b|LINE|L1	3135.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	20.19	30.18	27.95	44.64	37.23	27.91	13.95	42.62	32.85	37.66	59.8	26.94
Merged-chr17-25579122-3	chr17	25579039	25579239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-35.0	NM_029624	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	101.35	82.25	104.39	95.72	133.37	119.47	74.07	87.76	130.4	155.65	123.11	63.28
Merged-chr11-3181627-2	chr11	3181522	3181722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11841.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	11.71	20.63	21.11	20.51	20.46	24.46	23.92	22.54	3.34	1.0	3.52	1.88
Merged-chr16-84735336-3	chr16	84735246	84735446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-44.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	119.12	131.3	128.35	135.54	107.19	95.64	72.41	122.3	136.5	152.14	241.69	118.1
Merged-chr17-17063989-3	chr17	17063873	17064073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005358)	promoter-TSS (NM_001005358)	-130.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	25.84	23.14	13.69	36.2	28.23	19.76	30.56	17.13	30.09	31.63	50.75	26.63
Merged-chr15-95795362-3	chr15	95795250	95795450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4507.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	44.82	43.51	55.9	53.09	55.64	51.43	34.55	50.55	61.56	57.74	73.86	35.09
Merged-chr11-121204387-3	chr11	121204321	121204521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-12.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	55.72	36.72	34.8	32.58	60.14	67.73	45.51	41.33	76.71	62.76	72.86	50.75
Merged-chr14-55015280-3	chr14	55015184	55015384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-170.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	151.83	162.99	162.01	151.23	160.78	201.0	115.93	121.71	184.49	230.97	208.53	124.37
Merged-chr15-27681612-3	chr15	27681510	27681710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242423)	promoter-TSS (NM_001242423)	-68.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	125.18	134.57	127.78	158.47	159.14	139.85	142.83	158.24	191.38	166.7	231.64	111.52
Merged-chr6-108660523-3	chr6	108660424	108660624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-105.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	159.9	151.92	148.32	180.19	162.0	163.37	161.44	167.05	223.04	178.75	246.72	116.85
Merged-chr2-148857164-3	chr2	148857078	148857278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6244.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	17.36	15.34	27.38	35.39	30.68	34.81	29.23	52.71	24.19	24.6	32.16	22.56
Merged-chr3-103279707-3	chr3	103279626	103279826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053170, exon 1 of 20)	5' UTR (NM_053170, exon 1 of 20)	433.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	51.28	62.63	50.2	53.89	72.82	62.71	41.85	72.03	86.74	82.35	107.03	68.61
Merged-chr15-38518332-3	chr15	38518229	38518429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301688, intron 1 of 11)	CpG	937.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	216.43	247.0	250.43	242.53	281.05	323.61	272.05	306.53	321.98	361.52	457.76	225.55
Merged-chr17-81480537-3	chr17	81480450	81480650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257837.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	33.11	36.72	43.93	39.42	36.82	44.84	59.79	59.83	57.63	49.71	47.23	24.75
Merged-chr9-90114714-3	chr9	90114617	90114817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357780, exon 1 of 13)	5' UTR (NM_001357780, exon 1 of 13)	103.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	134.87	139.09	135.77	131.52	184.1	195.67	115.6	108.51	272.22	247.04	332.64	114.34
Merged-chr1-33757825-3	chr1	33757719	33757919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145392)	promoter-TSS (NM_145392)	-69.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	20.19	21.38	14.26	23.73	17.18	19.44	26.24	20.38	26.36	22.09	32.16	17.86
Merged-chr19-8712130-3	chr19	8712025	8712225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 3 of 9)	intron (NM_001161413, intron 3 of 9)	1772.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	46.44	32.2	42.78	38.21	32.32	39.82	17.27	30.25	40.12	45.19	33.67	27.88
Merged-chr2-167754080-3	chr2	167753974	167754174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62897.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	187.36	194.18	220.2	116.24	231.96	305.42	206.94	232.57	261.99	281.18	314.55	160.08
Merged-chr3-9759298-3	chr3	9759215	9759415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	74364.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	28.67	15.34	35.37	31.77	66.68	39.82	48.83	81.06	36.98	34.14	74.37	43.23
Merged-chr19-21104582-2	chr19	21104478	21104678	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126458)	promoter-TSS (NR_126458)	-132.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.86	4.78	5.7	2.82	21.27	13.48	18.27	16.68	19.08	29.12	29.14	21.93
Merged-chr8-25090567-3	chr8	25090470	25090670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	11241.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	73.89	49.8	63.89	59.93	50.73	51.11	52.82	64.18	64.51	49.71	59.8	48.24
Merged-chr18-57656232-3	chr18	57656136	57656336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	L1MB2|LINE|L1	-17651.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	48.86	45.78	83.86	59.93	68.32	49.23	64.77	91.43	83.79	102.43	73.86	75.81
Merged-chr11-107402386-3	chr11	107402293	107402493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	68327.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	24.23	13.58	39.36	28.15	34.36	24.77	29.23	38.66	21.64	9.04	34.17	9.71
Merged-chr6-48444232-3	chr6	48444138	48444338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355746, intron 1 of 4)	intron (NM_001355746, intron 1 of 4)	852.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	71.47	66.4	69.03	63.95	86.73	78.71	72.41	72.17	104.05	111.97	146.22	59.52
Merged-chr7-110614350-3	chr7	110614265	110614465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 1 of 40)	CpG	555.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	36.34	31.19	31.38	25.34	35.18	39.2	55.14	31.65	36.19	44.69	45.22	26.0
Merged-chr3-133310532-2	chr3	133310430	133310630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293641, intron 1 of 11)	CpG	420.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	29.48	32.7	19.4	37.81	41.73	37.32	83.04	47.52	36.78	30.63	48.74	32.27
Merged-chr7-101383933-3	chr7	101383827	101384027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1599.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	90.05	80.49	95.27	76.02	104.73	158.35	70.09	103.04	115.26	113.48	142.71	99.93
Merged-chr11-76889699-3	chr11	76889611	76889811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-14834.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	48.46	30.43	37.08	30.57	50.32	40.14	27.9	32.1	31.08	44.69	36.18	18.17
Merged-chr2-160318459-3	chr2	160318360	160318560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033411, intron 1 of 2)	intron (NM_001033411, intron 1 of 2)	9034.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	29.07	22.13	23.96	21.72	31.09	31.67	15.61	27.67	29.11	36.15	32.66	20.36
Merged-chr19-29241717-3	chr19	29241620	29241820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10083.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	25.04	34.96	30.8	26.95	56.87	59.89	36.87	39.81	66.68	68.29	73.36	39.47
Merged-chr8-86878742-3	chr8	86878633	86878833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6525.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	39.98	39.99	42.78	36.2	47.46	56.13	39.53	23.44	47.4	58.24	60.3	19.42
Merged-chr1-64305717-3	chr1	64305606	64305806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184317.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	88.84	106.14	89.56	60.73	83.05	155.53	114.93	95.66	129.03	134.06	108.54	68.92
Merged-chr17-64754584-3	chr17	64754471	64754671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12540.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	58.55	34.71	58.19	48.67	50.73	56.13	32.22	47.83	69.63	58.24	69.34	33.21
Merged-chr11-11686222-3	chr11	11686107	11686307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	282.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	109.02	91.81	107.25	106.18	82.64	98.46	77.4	114.98	123.52	144.1	151.25	85.84
Merged-chr12-41197462-3	chr12	41197369	41197569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	173379.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	26.25	19.87	61.61	32.98	29.86	21.64	43.51	53.89	26.16	24.1	39.19	21.3
Merged-chrX-109142473-3	chrX	109142357	109142557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	47050.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	27.05	17.61	28.52	35.8	40.91	28.22	25.24	33.67	31.86	35.65	38.19	28.51
Merged-chr2-109281154-1	chr2	109281054	109281254	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	416.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	21.4	36.47	23.96	25.74	35.18	41.39	33.22	32.8	27.54	41.17	42.71	22.87
Merged-chr1-36307698-3	chr1	36307584	36307784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-49.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	76.32	75.96	81.0	81.24	70.37	87.17	37.2	59.08	108.38	108.45	118.08	47.93
Merged-chr12-104225104-3	chr12	104224993	104225193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	10460.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	33.52	22.39	49.63	32.98	36.41	49.86	33.22	32.47	46.62	26.61	39.7	16.29
Merged-chr10-78373021-5	chr10	78372878	78373078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21278.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	21.4	27.42	27.38	26.95	31.5	33.24	27.57	20.19	17.51	34.65	32.66	27.25
Merged-chr11-20332813-3	chr11	20332732	20332932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-119.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	124.77	85.52	135.2	111.81	106.78	113.51	80.39	122.36	125.68	126.53	172.35	80.51
Merged-chr8-105966094-3	chr8	105965983	105966183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253804)	promoter-TSS (NM_001253804)	32.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	28.27	21.63	27.95	20.91	40.09	37.32	21.92	30.45	24.39	31.63	40.7	22.87
Merged-chr3-95645447-3	chr3	95645326	95645526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13295.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	83.59	58.35	61.61	33.38	71.59	81.84	25.91	44.13	67.07	71.8	63.82	27.57
Merged-chr6-137825506-3	chr6	137825365	137825565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70888.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	65.01	64.14	73.59	86.47	54.41	69.3	52.48	83.94	41.89	38.16	68.34	20.05
Merged-chr1-37491881-3	chr1	37491782	37491982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3277.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	134.87	125.51	143.18	151.63	126.0	175.91	111.61	123.25	166.4	127.53	153.76	94.29
Merged-chr4-126890077-3	chr4	126889968	126890168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357201, exon 20 of 28)	exon (NM_001357201, exon 20 of 28)	77855.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	22.61	16.85	39.93	59.12	21.27	19.13	31.89	52.57	29.5	40.17	63.31	28.51
Merged-chr18-9450179-3	chr18	9450084	9450284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-30.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	214.01	223.11	254.99	222.01	208.23	266.54	191.33	249.76	280.08	338.92	367.82	155.69
Merged-chr16-37871399-3	chr16	37871306	37871506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	3006.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	14.94	20.63	34.8	23.33	31.09	21.01	13.29	20.83	21.44	14.06	27.64	14.41
Merged-chr4-45408790-3	chr4	45408682	45408882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-16.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	58.55	58.35	103.25	50.68	75.68	103.48	43.18	78.56	154.79	158.67	188.43	117.16
Merged-chr8-115414300-3	chr8	115414196	115414396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	292598.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	30.28	26.66	40.5	32.98	50.73	44.53	22.92	59.02	52.32	38.16	47.74	25.06
Merged-chrX-20364495-3	chrX	20364389	20364589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110967)	promoter-TSS (NR_110967)	8.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	59.36	44.77	46.78	61.54	56.46	57.38	37.2	43.99	58.61	62.76	105.02	45.74
Merged-chr5-111176713-2	chr5	111176600	111176800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-153997.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	16.56	23.39	35.94	25.34	22.91	20.38	24.58	24.59	0.98	0.0	1.0	1.57
Merged-chr10-53505721-3	chr10	53505615	53505815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	13274.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	52.09	46.03	100.97	84.46	56.46	59.89	48.16	97.85	80.45	53.73	80.9	44.48
Merged-chr9-66593143-3	chr9	66593069	66593269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-54.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	68.65	69.67	45.07	32.18	90.82	108.81	35.87	47.64	147.71	119.5	130.65	72.68
Merged-chr10-127676901-3	chr10	127676777	127676977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113211)	promoter-TSS (NM_001113211)	-188.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	149.81	140.6	177.41	150.02	179.19	174.35	116.26	136.6	230.52	239.5	244.71	118.73
Merged-chr3-95521405-3	chr3	95521284	95521484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5402.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	33.11	24.4	39.36	34.99	33.55	31.98	23.58	42.36	43.47	53.73	44.22	28.82
Merged-chr10-10551053-1	chr10	10550953	10551153	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	7154.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	3.23	1.76	1.71	9.65	3.27	6.9	7.97	11.19	6.1	3.01	7.54	4.39
Merged-chr6-134189963-3	chr6	134189851	134190051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	154251.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	58.95	56.59	71.88	44.64	44.59	90.94	59.79	55.54	65.1	71.8	78.39	23.18
Merged-chr12-12176796-3	chr12	12176697	12176897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85342.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	20.19	13.58	17.11	20.11	21.68	29.16	27.24	38.33	32.85	19.08	20.1	19.42
Merged-chr5-105151011-3	chr5	105150909	105151109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11423.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	38.76	44.52	39.93	24.94	23.73	45.78	27.57	17.83	47.21	44.69	49.75	15.66
Merged-chr11-76406855-3	chr11	76406778	76406978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291161)	promoter-TSS (NM_001291161)	-47.0	NM_001291161	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	68.24	50.56	56.48	42.63	67.09	80.9	33.88	39.98	69.82	83.85	61.3	36.34
Merged-chr8-25091307-3	chr8	25091207	25091407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	10504.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	54.92	48.04	53.62	55.91	39.27	57.7	39.86	49.07	50.35	47.2	65.83	40.41
Merged-chr9-40631338-3	chr9	40631233	40631433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-54631.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	38.76	23.14	37.65	30.57	34.77	27.59	17.27	38.55	23.21	28.12	42.21	27.57
Merged-chr18-67449293-3	chr18	67449136	67449336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-100.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	92.47	124.0	115.8	117.44	155.46	193.47	122.9	112.09	231.9	233.98	216.57	117.79
Merged-chr7-24442470-3	chr7	24442362	24442562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3220.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	26.65	24.9	38.79	32.18	87.96	93.76	55.14	82.6	70.41	61.26	92.46	46.99
Merged-chr5-88595671-3	chr5	88595518	88595718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	12105.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	92.47	94.83	104.39	116.64	113.73	141.11	107.96	97.26	137.48	133.06	144.21	81.76
Merged-chr10-41477354-3	chr10	41477232	41477432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-678.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	27.86	23.64	39.36	30.16	40.09	42.65	28.9	36.45	64.51	65.27	69.85	32.27
Merged-chr3-89214406-3	chr3	89214302	89214502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-67.0	NM_001357367	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	82.78	61.37	53.05	54.7	66.68	84.66	31.89	54.48	76.12	74.81	79.89	56.7
Merged-chr4-128707593-3	chr4	128707491	128707691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18853.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	27.05	35.72	52.48	24.13	25.36	31.98	26.24	25.46	35.4	48.7	28.14	18.8
Merged-chr5-113777059-3	chr5	113776981	113777181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025526, intron 4 of 4)	intron (NM_025526, intron 4 of 4)	4269.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	83.99	66.15	99.26	89.69	96.55	93.76	82.38	98.22	95.39	74.31	142.2	80.82
Merged-chrX-7714620-3	chrX	7714503	7714703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_172372	54636.0	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	41.99	51.06	57.05	59.12	56.46	73.38	43.85	43.21	75.92	70.29	94.97	53.26
Merged-chr7-97083022-3	chr7	97082910	97083110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	1259.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	32.3	26.16	30.23	53.09	41.32	30.42	38.86	53.75	47.8	48.7	92.96	51.06
Merged-chr3-9033979-3	chr3	9033864	9034064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28000.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	16.96	10.31	26.24	30.97	72.82	48.6	60.12	68.08	89.89	66.78	140.7	87.4
Merged-chr5-65435971-3	chr5	65435869	65436069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-127.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	132.44	107.15	109.53	119.45	136.64	142.68	112.61	188.78	171.32	159.17	225.61	94.29
Merged-chr1-156558724-3	chr1	156558626	156558826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009595)	promoter-TSS (NM_009595)	-61.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	41.99	34.96	47.35	36.2	74.05	62.09	27.24	61.15	96.97	69.29	124.62	53.26
Merged-chr1-118388931-3	chr1	118388824	118389024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-134.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	23.82	24.15	19.97	32.18	39.68	39.51	32.55	26.58	46.22	52.72	58.29	37.91
Merged-chr6-125001340-3	chr6	125001241	125001441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145926, intron 4 of 5)	intron (NM_001145926, intron 4 of 5)	2731.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	42.8	33.7	49.06	47.06	25.36	37.63	17.94	34.26	36.78	25.11	44.72	30.07
Merged-chr17-28233223-2	chr17	28233121	28233321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	467.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	15.75	17.1	6.85	8.04	8.59	20.38	12.95	8.16	12.98	18.08	11.56	13.47
Merged-chr14-74946843-3	chr14	74946715	74946915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	1062.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	16.56	30.43	16.54	24.13	20.86	17.87	22.92	14.41	18.1	21.59	20.1	11.9
Merged-chr15-28024549-3	chr15	28024462	28024662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	CpG	1286.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	23.82	27.42	31.38	28.15	28.23	15.05	36.87	30.08	36.78	18.08	23.11	21.3
Merged-chr8-117476025-3	chr8	117475927	117476127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16762.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	45.23	35.21	25.1	37.4	36.0	42.65	34.21	33.73	57.43	52.72	66.83	30.07
Merged-chr7-27166682-5	chr7	27166549	27166749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	153.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	72.68	62.88	57.62	73.6	42.96	79.33	69.76	45.14	67.66	90.38	45.22	64.22
Merged-chr8-111056299-3	chr8	111056186	111056386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028274)	promoter-TSS (NM_028274)	-53.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	75.51	60.62	79.29	82.45	78.55	72.75	41.85	73.88	83.2	82.85	128.13	56.7
Merged-chr2-31052640-3	chr2	31052531	31052731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019406)	TTS (NM_019406)	43869.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	90.85	85.02	76.44	76.42	74.05	94.07	66.1	78.34	67.66	64.27	75.87	47.3
Merged-chr5-65867939-3	chr5	65867833	65868033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	4364.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	49.26	25.66	59.9	55.1	40.91	51.43	48.16	48.48	38.94	33.64	69.85	34.46
Merged-chr11-76027825-3	chr11	76027698	76027898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-16.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	27.05	29.43	24.53	14.88	50.73	43.27	17.94	31.07	39.73	46.7	48.24	18.48
Merged-chr7-121072609-3	chr7	121072510	121072710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	1920.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	73.49	69.17	62.18	30.97	69.14	87.8	79.72	59.94	120.57	90.88	91.45	47.93
Merged-chr10-18999591-1	chr10	18999491	18999691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12372.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	17.77	24.15	6.28	0.0	6.55	16.31	2.66	3.95	5.7	7.03	5.53	2.82
Merged-chr15-95824422-3	chr15	95824337	95824537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155276)	TTS (NR_155276)	5635.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	71.88	50.05	86.71	54.7	76.91	91.25	66.77	85.32	62.94	57.74	91.95	46.68
Merged-chr3-40745293-3	chr3	40745202	40745402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011020)	promoter-TSS (NM_011020)	-311.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	109.83	114.95	120.37	141.98	113.73	165.57	158.78	205.66	143.58	149.13	175.87	99.62
Merged-chrX-107816325-3	chrX	107816210	107816410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025921)	promoter-TSS (NM_025921)	24.0	NM_025921	67028.0	Mm.37274	NM_025921	ENSMUSG00000031242	2610002M06Rik	8430408J07Rik|AI876413|Chmp1b2	RIKEN cDNA 2610002M06 gene	protein-coding	65.82	91.81	70.74	68.78	93.68	107.87	77.73	122.33	106.8	90.88	160.29	53.88
Merged-chr2-131091073-3	chr2	131090993	131091193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4328.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	65.41	45.28	96.41	93.71	78.55	84.35	72.08	87.0	48.39	63.27	107.53	55.13
Merged-chr12-25209026-3	chr12	25208924	25209124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79850.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	15.34	13.33	47.35	26.14	16.36	17.25	35.54	56.13	12.39	6.53	18.09	16.6
Merged-chr16-33745642-3	chr16	33745548	33745748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-48389.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	45.23	35.72	55.33	65.96	61.77	51.74	66.43	62.58	60.38	51.21	71.35	42.29
Merged-chr2-148409328-3	chr2	148409220	148409420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	31.09	32.95	37.08	35.39	40.91	42.96	49.49	54.0	43.47	43.18	69.85	41.35
Merged-chr6-72414280-3	chr6	72414191	72414391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019802)	promoter-TSS (NM_019802)	-17.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	86.82	79.48	66.74	70.79	99.82	104.42	48.5	89.1	124.5	114.98	128.64	63.91
Merged-chr17-17910304-3	chr17	17910177	17910377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	22453.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	90.45	97.84	129.49	76.42	130.09	130.13	104.3	153.22	254.71	211.39	435.65	151.31
Merged-chr18-34378179-3	chr18	34378084	34378284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4769.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	40.38	24.15	41.07	61.13	31.09	14.74	24.58	35.19	25.57	25.61	25.63	31.95
Merged-chr17-3084092-3	chr17	3084005	3084205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	78.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	67.43	72.44	76.44	82.05	79.37	100.03	96.0	93.42	79.46	68.29	118.59	64.22
Merged-chr13-33085820-3	chr13	33085729	33085929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173052, intron 2 of 6)	RMER17C|LTR|ERVK	1726.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	43.61	30.18	65.03	40.22	58.09	55.82	27.24	46.26	60.97	41.17	84.42	40.72
Merged-chr1-79581560-2	chr1	79581465	79581665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90407.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	27.46	28.42	50.77	21.32	17.59	19.13	13.95	25.09	3.34	1.0	1.0	1.57
Merged-chr19-3699655-3	chr19	3699544	3699744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8649.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	26.65	22.89	13.69	25.34	26.59	25.71	15.28	17.72	20.65	23.1	29.14	26.31
Merged-chr3-32708533-3	chr3	32708436	32708636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	-10.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	207.15	187.14	187.11	197.48	222.14	313.89	247.47	273.09	287.56	273.15	410.53	150.37
Merged-chr12-32378984-3	chr12	32378935	32379135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	246.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	37.55	45.02	50.2	47.06	35.18	41.71	44.84	61.26	57.24	48.7	78.89	36.34
Merged-chr17-27897164-1	chr17	27897064	27897264	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	12078.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0.4	0.5	1.14	0.0	0.82	0.0	0.66	0.59	22.03	16.57	21.61	16.92
Merged-chr10-44383166-3	chr10	44383063	44383263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23487.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	38.36	44.02	92.98	63.55	70.77	61.77	74.07	83.36	77.89	53.73	85.92	53.88
Merged-chr2-170159181-3	chr2	170159070	170159270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16495.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	27.46	13.83	22.25	21.72	21.27	32.3	24.58	33.87	41.7	31.13	43.72	28.82
Merged-chr13-80949677-1	chr13	80949577	80949777	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9274.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	11.71	11.32	18.83	16.09	42.14	16.62	36.87	47.44	17.31	17.57	48.74	16.92
Merged-chr5-134567702-3	chr5	134567607	134567807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4369.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	48.86	44.02	70.74	59.12	62.59	45.78	30.56	57.87	63.33	50.21	69.85	34.77
Merged-chr1-189707247-3	chr1	189707120	189707320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19134.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	24.23	15.34	11.98	43.04	20.46	9.72	32.22	34.49	48.19	32.13	45.22	23.49
Merged-chr16-8831087-3	chr16	8830981	8831181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081400, intron 1 of 3)	CpG	981.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	79.14	71.94	68.45	64.35	86.73	104.73	86.36	104.47	113.88	75.32	162.8	42.6
Merged-chr4-127021162-3	chr4	127021034	127021234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-167.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	137.69	127.02	122.08	114.63	152.19	199.43	94.67	136.94	214.59	200.84	198.98	134.39
Merged-chr14-70075482-3	chr14	70075373	70075573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1972.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	21.8	29.93	15.4	13.67	15.14	21.01	10.63	15.08	31.27	43.68	36.68	27.88
Merged-chr6-52714323-3	chr6	52714221	52714421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355596, exon 1 of 18)	5' UTR (NM_001355596, exon 1 of 18)	156.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	30.28	35.47	21.11	39.42	24.14	32.61	37.54	27.79	16.72	20.59	31.66	25.37
Merged-chr10-125389471-3	chr10	125389351	125389551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-60488.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	24.23	34.46	35.94	33.38	32.73	46.41	40.19	44.66	38.55	49.21	44.72	37.59
Merged-chr14-51164541-3	chr14	51164432	51164632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2272.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	32.3	26.66	42.21	41.43	26.59	50.49	33.55	26.19	52.52	36.65	55.78	23.18
Merged-chr16-14361550-3	chr16	14361438	14361638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-20.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	74.7	63.39	61.61	81.24	82.23	117.28	51.15	69.28	107.59	119.0	157.78	66.73
Merged-chr16-33885827-3	chr16	33885737	33885937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	56172.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	22.21	20.37	34.8	24.13	13.09	14.11	21.92	28.79	23.21	17.07	22.61	18.48
Merged-chr16-58408387-3	chr16	58408290	58408490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-145.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	108.22	66.4	134.63	147.61	160.78	221.07	132.54	248.58	148.7	141.09	271.84	111.84
Merged-chr19-4012795-3	chr19	4012712	4012912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133666)	promoter-TSS (NM_133666)	-57.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	105.79	80.24	65.03	83.26	88.37	115.71	68.43	67.01	114.47	109.46	129.14	69.55
Merged-chr7-97738137-3	chr7	97738034	97738234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175105, exon 1 of 3)	5' UTR (NM_175105, exon 1 of 3)	113.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	39.98	25.4	37.08	34.99	53.59	37.63	39.2	49.74	41.11	40.17	55.27	19.42
Merged-chr7-83802718-3	chr7	83802625	83802825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7886.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	64.61	70.68	58.19	89.29	63.41	47.98	43.18	71.52	53.3	53.22	66.33	51.06
Merged-chr6-71908974-5	chr6	71908867	71909067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	-86.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	18.57	13.58	6.85	15.69	15.55	19.13	14.95	14.16	20.26	18.08	13.57	14.1
Merged-chr14-75179806-3	chr14	75179708	75179908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43383.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	112.26	97.59	96.41	110.6	93.68	121.35	65.11	83.19	129.22	118.5	123.11	97.74
Merged-chr12-73779436-3	chr12	73779325	73779525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121899.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	102.16	146.14	171.71	137.15	192.69	232.98	170.4	192.14	182.72	186.78	245.21	124.99
Merged-chr7-46639817-3	chr7	46639715	46639915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-8.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	84.39	40.24	47.92	50.27	89.18	84.98	63.44	110.72	76.12	73.31	81.9	47.62
Merged-chr3-9666089-2	chr3	9665977	9666177	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55992.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	6.06	5.28	3.42	4.42	16.36	16.93	19.6	20.64	20.85	22.59	31.15	15.98
Merged-chr2-19055649-3	chr2	19055553	19055753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57334.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	24.63	24.9	31.95	37.4	16.77	27.91	15.28	23.02	39.53	38.66	23.11	15.04
Merged-chr16-96358080-1	chr16	96357980	96358180	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3677.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.0	0.5	2.28	2.82	1.64	2.2	0.0	5.97	25.77	22.59	27.13	19.42
Merged-chr3-90509108-3	chr3	90509022	90509222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293777, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	376.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	22.21	32.95	22.25	28.15	35.18	40.76	24.91	23.19	24.19	27.62	35.17	18.8
Merged-chr11-19920468-3	chr11	19920349	19920549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3993.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	79.55	59.36	46.78	63.55	57.68	105.36	70.09	81.34	100.11	92.39	132.15	58.58
Merged-chr19-17253024-1	chr19	17252924	17253124	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86481.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.04	2.26	4.56	3.62	1.23	0.31	2.33	1.6	25.57	19.08	37.69	18.17
Merged-chr9-63780722-3	chr9	63780609	63780809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22715.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	65.01	57.85	69.03	52.69	77.32	87.8	50.16	68.61	73.76	59.25	77.38	51.69
Merged-chr13-55211530-3	chr13	55211436	55211636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 1 of 22)	CpG	1754.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	55.72	64.64	70.74	53.89	56.05	96.58	62.78	53.66	80.05	98.91	76.38	60.46
Merged-chr11-20112971-3	chr11	20112865	20113065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-14.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	153.44	180.35	155.73	181.79	181.23	206.02	150.47	171.59	242.91	284.19	334.15	157.89
Merged-chr9-107597689-3	chr9	107597593	107597793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_111986)	TTS (NR_111986)	7709.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	37.15	25.66	65.6	68.78	39.27	33.24	73.08	52.93	39.53	49.71	94.47	33.52
Merged-chr5-113993890-3	chr5	113993818	113994018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198109)	promoter-TSS (NM_198109)	-161.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	38.36	31.44	33.66	32.98	36.0	41.71	23.92	28.46	62.55	56.74	69.85	30.7
Merged-chr8-117067179-3	chr8	117067079	117067279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15270.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	23.02	20.12	62.18	54.7	49.09	29.79	52.82	48.87	67.86	49.71	93.96	45.11
Merged-chr9-65550389-2	chr9	65550298	65550498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29689.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	40.78	38.74	51.34	44.64	46.23	58.32	37.54	36.42	1.57	16.57	6.53	9.4
Merged-chr12-81719896-3	chr12	81719782	81719982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61288.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	74.7	51.31	70.74	97.73	58.91	62.4	48.16	73.26	77.1	63.77	77.88	36.65
Merged-chr16-55810420-1	chr16	55810320	55810520	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001159394)	TTS (NM_001159394)	11718.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	12.52	9.31	2.28	4.42	10.64	32.61	1.33	0.45	8.85	29.62	3.01	2.51
Merged-chr2-119338060-3	chr2	119338000	119338200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11903.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	62.59	69.17	72.45	37.81	67.91	59.89	42.85	48.22	53.5	70.29	85.92	21.62
Merged-chr11-34010401-3	chr11	34010299	34010499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17206.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	39.98	28.93	23.96	34.19	52.37	71.49	38.2	36.62	76.12	89.37	77.88	29.76
Merged-chr10-69275518-1	chr10	69275418	69275618	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	62324.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	8.88	4.02	4.56	4.02	6.55	1.25	13.29	9.59	6.1	7.53	8.54	8.77
Merged-chr17-63895376-3	chr17	63895289	63895489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286415, intron 1 of 17)	intron (NM_001286415, intron 1 of 17)	17323.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	56.53	50.31	91.84	88.89	63.82	70.55	80.72	71.52	71.0	72.81	109.54	70.48
Merged-chr11-74649354-3	chr11	74649261	74649461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-134.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	147.79	142.11	167.71	119.86	135.0	168.08	102.97	112.79	151.06	167.7	160.79	114.97
Merged-chr12-59013428-3	chr12	59013334	59013534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025656)	promoter-TSS (NM_025656)	43.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	56.94	55.08	50.2	63.15	74.87	78.71	54.81	85.43	92.25	74.31	97.98	51.38
Merged-chr14-73445682-3	chr14	73445594	73445794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60405.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	66.63	66.91	107.82	84.46	80.59	127.94	81.38	67.91	94.61	61.76	102.51	30.7
Merged-chr5-65867497-3	chr5	65867383	65867583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3914.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	63.8	47.54	41.64	49.07	69.96	45.47	31.56	58.96	50.75	62.76	57.28	45.74
Merged-chr13-30674124-3	chr13	30674021	30674221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	14062.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	32.3	22.39	27.95	34.59	24.55	23.2	25.24	38.86	32.45	25.61	39.19	29.45
Merged-chr7-27592008-1	chr7	27591908	27592108	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110208, intron 1 of 13)	CpG	456.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	17.36	15.59	17.68	21.72	22.5	28.22	25.24	17.13	30.68	19.58	37.18	25.69
Merged-chr9-75436124-3	chr9	75436030	75436230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5394.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	140.92	119.73	118.08	109.0	120.69	169.96	108.62	123.56	180.76	148.62	209.54	99.62
Merged-chr5-101827120-3	chr5	101827014	101827214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61984.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	48.86	68.92	46.78	10.46	26.18	93.13	28.9	16.09	48.58	52.22	42.21	20.99
Merged-chr15-76368892-3	chr15	76368775	76368975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-23.0	NM_021555	59053.0	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	48.86	38.99	46.78	28.96	33.55	57.07	23.25	46.18	35.99	35.65	40.7	36.34
Merged-chr14-122107048-3	chr14	122106975	122107175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	-7.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	188.57	202.98	179.69	170.93	198.01	215.11	166.75	220.71	268.87	248.54	295.46	155.38
Merged-chr9-5311922-3	chr9	5311827	5312027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	3078.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	48.05	55.84	31.38	23.33	69.14	61.46	25.58	20.94	60.58	57.74	51.76	23.49
Merged-chrX-94865742-3	chrX	94865641	94865841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67452.0	NR_003292	668171.0	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	45.63	20.63	16.54	26.95	32.32	45.47	26.57	53.05	34.42	44.19	58.79	29.13
Merged-chr9-40324438-3	chr9	40324341	40324541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3118.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	178.88	165.51	194.53	186.22	178.37	222.32	220.23	253.77	189.61	203.35	291.44	121.55
Merged-chr13-63877301-3	chr13	63877192	63877392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013608, intron 16 of 18)	intron (NM_001013608, intron 16 of 18)	62052.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	29.48	25.15	39.36	31.37	25.77	45.47	34.55	54.93	89.69	74.31	84.92	70.48
Merged-chr17-29032608-3	chr17	29032504	29032704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-56.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	92.87	104.13	83.86	70.38	80.18	121.98	63.11	69.84	160.5	138.08	135.17	73.62
Merged-chr10-17418342-3	chr10	17418254	17418454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-304874.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	36.34	51.06	45.07	41.83	62.59	69.93	41.85	58.65	58.61	45.69	77.38	31.95
Merged-chr7-38107983-1	chr7	38107883	38108083	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-493.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	55.32	56.34	61.04	47.06	60.55	82.16	80.72	75.79	76.31	89.88	107.03	62.34
Merged-chr12-4544589-3	chr12	4544485	4544685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	20472.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	23.42	19.87	23.39	23.73	50.73	27.59	31.56	35.86	38.55	36.15	48.24	15.35
Merged-chr18-80704969-3	chr18	80704875	80705075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	3198.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	33.52	31.44	28.52	41.43	58.09	46.41	25.58	51.48	43.47	38.66	54.77	26.31
Merged-chr9-50659594-3	chr9	50659491	50659691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145614, exon 1 of 14)	5' UTR (NM_145614, exon 1 of 14)	189.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	39.57	33.96	35.94	26.14	49.09	48.6	24.25	35.27	55.66	59.25	59.29	32.58
Merged-chr8-105326362-3	chr8	105326261	105326461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	-3.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	74.3	76.72	82.15	65.96	105.96	120.73	59.46	84.95	116.24	133.56	107.03	79.88
Merged-chr11-114569024-2	chr11	114568917	114569117	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99526.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.81	0.0	0.0	0.8	22.5	25.4	16.61	21.62	22.62	29.12	33.67	16.6
Merged-chr12-40558833-3	chr12	40558726	40558926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	112773.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	73.09	54.58	50.77	65.16	87.55	103.48	45.18	59.89	108.18	51.21	93.96	44.8
Merged-chr4-72165896-3	chr4	72165797	72165997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	34996.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	29.88	18.86	31.38	22.12	44.59	46.1	24.58	52.12	43.27	21.59	62.31	27.25
Merged-chr19-10305000-3	chr19	10304896	10305096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-119.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	48.46	70.18	51.34	53.09	53.59	63.66	33.55	41.44	51.14	70.29	54.27	42.92
Merged-chr6-128803212-3	chr6	128803116	128803316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14575.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	199.88	218.07	207.65	210.35	230.73	237.37	256.44	231.31	256.28	261.6	323.1	167.28
Merged-chr2-153015413-3	chr2	153015295	153015495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-12.0	NM_178939	68559.0	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	89.64	68.16	63.32	58.32	62.59	113.83	47.5	62.13	73.17	106.45	88.94	65.47
Merged-chr6-118139187-3	chr6	118139078	118139278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-38.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	132.04	139.6	94.13	115.43	126.0	144.56	121.57	106.09	178.4	162.68	194.46	93.35
Merged-chr2-164443217-3	chr2	164443105	164443305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011521)	promoter-TSS (NM_011521)	-17.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	149.4	126.02	62.75	39.82	67.09	173.72	69.42	20.86	128.83	114.98	87.43	27.25
Merged-chr15-79546125-3	chr15	79546032	79546232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040187, intron 1 of 12)	CpG	427.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	23.42	22.64	20.54	22.12	27.41	25.09	18.27	19.6	32.06	24.1	29.65	27.88
Merged-chr6-120187792-3	chr6	120187685	120187885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-6038.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	43.61	35.21	35.94	56.71	65.46	46.72	32.55	73.29	53.5	25.61	70.85	25.06
Merged-chr1-180261159-3	chr1	180261080	180261280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4880.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	106.6	95.58	109.53	150.42	106.78	136.4	89.02	112.71	138.27	136.57	172.35	90.85
Merged-chr9-63031578-3	chr9	63031478	63031678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50699.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	35.13	28.93	38.79	41.83	40.09	43.27	22.59	46.49	42.48	33.14	47.23	35.09
Merged-chr4-83273900-3	chr4	83273789	83273989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	50300.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	104.58	102.87	154.02	142.38	126.82	143.93	150.81	169.88	139.06	116.99	217.57	84.9
Merged-chr14-30654370-3	chr14	30654269	30654469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177815)	promoter-TSS (NM_177815)	-6.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	86.82	71.94	77.01	66.77	77.32	89.05	46.17	77.86	131.78	88.87	77.88	39.47
Merged-chr7-29983799-3	chr7	29983716	29983916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-139.0	NM_001167873	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	110.24	107.91	168.28	195.07	141.96	119.78	124.23	187.46	121.75	120.51	172.85	82.7
Merged-chr11-8604947-3	chr11	8604830	8605030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	59605.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	50.88	55.34	84.43	68.37	87.96	102.22	81.05	117.93	86.35	82.35	75.87	67.04
Merged-chr12-103343644-3	chr12	103343546	103343746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	12355.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	149.81	118.47	200.23	172.95	128.46	125.43	110.95	172.4	168.17	116.99	231.14	93.04
Merged-chr9-95954790-3	chr9	95954673	95954873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	13.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	61.38	52.32	43.35	44.64	70.37	77.14	44.51	54.53	90.28	98.41	109.04	67.98
Merged-chr15-79063045-3	chr15	79062948	79063148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-189.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	220.88	203.99	229.32	230.46	238.92	312.95	159.11	233.92	293.07	341.93	342.19	200.18
Merged-chr7-43664197-3	chr7	43664089	43664289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4028.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	41.99	27.92	35.94	44.24	45.41	46.1	41.85	52.82	39.14	40.17	53.77	23.81
Merged-chr17-80062317-3	chr17	80062199	80062399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-31.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	149.4	128.53	130.06	148.01	138.28	131.07	165.75	184.85	177.41	207.87	242.7	143.16
Merged-chr17-84061837-3	chr17	84061732	84061932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-16828.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	36.34	21.88	79.29	56.31	49.5	37.63	52.15	75.67	57.43	29.12	60.3	50.12
Merged-chr19-42779817-3	chr19	42779738	42779938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001346703, exon 1 of 20)	5' UTR (NM_001346703, exon 1 of 20)	140.0	NM_001346703	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	91.66	93.07	86.14	117.44	94.09	97.83	106.63	81.93	103.65	116.49	114.57	79.26
Merged-chr11-3169660-2	chr11	3169548	3169748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23815.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	22.61	20.12	20.54	24.13	36.82	15.37	21.26	25.35	1.57	1.0	0.0	0.94
Merged-chr1-171411301-3	chr1	171411182	171411382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-31.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	32.71	22.13	22.82	33.38	28.23	33.55	24.58	24.62	54.48	76.82	54.27	36.03
Merged-chrX-109189792-3	chrX	109189683	109189883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6973.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	16.96	24.65	25.1	18.5	44.18	49.23	31.89	44.89	24.39	16.57	29.65	13.78
Merged-chrX-159988152-3	chrX	159988053	159988253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163085)	promoter-TSS (NM_001163085)	-280.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	48.05	33.45	39.93	44.64	54.0	64.91	36.54	53.1	64.12	59.75	70.35	27.25
Merged-chr2-131089829-3	chr2	131089731	131089931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3066.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	69.05	53.07	81.58	57.92	64.64	61.77	46.84	76.63	56.06	42.68	79.39	34.77
Merged-chr1-91063329-3	chr1	91063233	91063433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9889.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	27.86	26.91	35.94	32.98	22.5	15.37	17.61	23.52	31.47	33.64	46.73	21.62
Merged-chr6-124712184-3	chr6	124712097	124712297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	-19.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	146.98	147.9	106.1	143.59	168.14	190.03	134.2	123.34	202.98	182.26	182.4	87.09
Merged-chr13-93772165-3	chr13	93772074	93772274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	495.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	56.13	33.2	55.33	48.67	56.46	42.65	26.57	52.68	52.91	51.21	64.32	38.22
Merged-chr13-119429493-3	chr13	119429365	119429565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145457, intron 1 of 10)	CpG	563.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	21.4	28.93	22.25	26.14	24.55	25.4	25.24	19.91	26.36	21.59	27.64	24.12
Merged-chr11-55461310-3	chr11	55461202	55461402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009720)	promoter-TSS (NM_009720)	-94.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	207.55	200.97	219.63	226.44	243.83	341.79	195.32	199.18	333.78	345.45	387.41	197.04
Merged-chr14-50997278-3	chr14	50997146	50997346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10505.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	27.86	22.13	35.94	24.53	40.5	36.06	18.27	28.82	31.47	21.59	35.68	11.9
Merged-chr19-6118517-3	chr19	6118409	6118609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133678)	promoter-TSS (NM_133678)	77.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	55.72	36.22	38.79	28.96	41.32	48.29	17.94	31.71	34.03	32.13	26.63	33.21
Merged-chr2-166696807-3	chr2	166696694	166696894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	MTD|LTR|ERVL-MaLR	17038.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	63.8	66.65	49.06	58.32	63.41	66.48	42.19	28.88	79.07	57.74	88.94	30.7
Merged-chr15-86169880-3	chr15	86169800	86170000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15828.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	110.24	85.52	133.49	121.06	127.64	126.68	111.28	143.94	146.14	139.59	138.18	95.86
Merged-chr11-69666232-3	chr11	69666134	69666334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-64.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	182.92	151.17	177.41	167.32	193.1	264.97	157.78	157.01	201.61	190.8	195.97	145.67
Merged-chr10-70214516-3	chr10	70214337	70214537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9773.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	12.92	11.07	19.97	12.87	10.64	10.98	14.28	12.5	17.9	12.05	29.14	14.72
Merged-chr6-142757257-3	chr6	142757148	142757348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	562.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	36.75	18.86	25.1	28.15	47.87	35.75	31.89	45.56	56.06	53.22	47.74	32.27
Merged-chr4-138969322-3	chr4	138969179	138969379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025786)	TTS (NM_025786)	2167.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	32.71	37.73	30.23	18.9	74.87	78.08	51.15	40.96	46.03	38.66	43.21	24.12
Merged-chr2-122378005-3	chr2	122377910	122378110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-His-CAY_|tRNA|tRNA	-9092.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	53.7	34.71	34.23	58.72	43.77	59.27	42.52	36.62	37.76	35.65	70.85	34.77
Merged-chr8-57801410-3	chr8	57801309	57801509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-148354.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	114.27	96.34	131.78	121.46	85.5	95.64	80.39	126.79	144.37	121.51	134.67	81.45
Merged-chr4-129742899-3	chr4	129742813	129743013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-610.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	29.07	28.17	45.07	35.39	34.77	30.42	29.56	40.18	50.75	38.66	61.81	27.57
Merged-chr11-4240441-1	chr11	4240341	4240541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001013365, exon 3 of 3)	3' UTR (NM_001013365, exon 3 of 3)	3656.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	4.04	4.78	3.42	4.42	15.14	15.99	13.29	30.95	3.34	3.01	5.53	1.57
Merged-chr14-30620404-3	chr14	30620294	30620494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5814.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	56.13	42.76	57.05	56.71	78.14	59.58	50.82	60.42	74.35	81.34	85.92	39.47
Merged-chr8-46934393-3	chr8	46934297	46934497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52490.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	26.65	27.67	30.8	34.99	39.27	38.26	27.24	31.74	38.94	46.7	42.71	28.82
Merged-chr5-138171988-3	chr5	138171891	138172091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-30.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	154.65	131.05	121.51	92.51	125.19	165.25	96.66	114.11	160.69	151.64	154.76	94.92
Merged-chr8-70523144-3	chr8	70523018	70523218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029366)	promoter-TSS (NM_029366)	62.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	75.51	61.88	83.86	71.19	90.82	106.93	34.55	58.23	108.38	87.87	79.89	52.63
Merged-chr4-46360054-3	chr4	46359961	46360161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	15867.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	33.92	39.74	31.95	26.95	36.41	50.49	22.59	29.02	39.93	55.73	58.29	45.42
Merged-chr1-161251576-2	chr1	161251470	161251670	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-360.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	21.8	10.06	24.53	22.52	16.36	23.83	8.3	17.66	42.48	33.14	47.74	19.42
Merged-chr16-4214217-3	chr16	4214118	4214318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-814.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	89.24	102.87	85.57	75.21	91.23	114.45	85.04	72.7	82.81	124.52	103.01	70.17
Merged-chr10-66852107-3	chr10	66852020	66852220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	68264.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	74.3	59.86	72.45	58.32	66.27	77.14	58.79	77.83	92.64	78.33	109.54	49.5
Merged-chrX-107298972-1	chrX	107298872	107299072	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14626.0	NM_001177782	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	3.63	3.52	3.42	5.63	11.05	5.02	3.65	9.87	7.67	9.04	4.02	3.45
Merged-chr2-148527201-3	chr2	148527099	148527299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83664.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	40.78	28.42	81.0	59.53	70.37	41.08	66.1	81.67	48.78	49.71	78.39	48.87
Merged-chr14-54426910-3	chr14	54426828	54427028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	19.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	49.26	27.67	44.5	30.16	41.73	35.43	25.91	30.31	38.75	34.14	34.17	32.89
Merged-chr12-73667765-3	chr12	73667677	73667877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	82981.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	43.21	32.95	41.64	57.51	76.09	69.3	62.78	75.5	83.99	55.73	85.92	50.75
Merged-chr2-11502119-3	chr2	11502049	11502249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177752)	promoter-TSS (NM_001177752)	-59.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	49.26	37.98	57.62	35.8	47.46	66.16	43.18	61.21	73.17	78.83	78.39	62.03
Merged-chr8-86872312-3	chr8	86872220	86872420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	12938.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	41.59	38.23	37.08	33.78	54.41	53.62	26.24	55.85	45.63	42.68	47.23	31.64
Merged-chr7-19316529-3	chr7	19316426	19316626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6481.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	109.83	68.92	217.91	207.13	168.96	110.69	210.26	244.96	167.38	138.58	287.42	167.91
Merged-chrX-151344123-3	chrX	151344011	151344211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198105)	promoter-TSS (NM_198105)	-112.0	NM_198105	207375.0	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	16.56	20.63	27.95	24.53	36.82	31.67	22.92	37.93	40.91	47.7	52.76	31.33
Merged-chr16-87689040-3	chr16	87688934	87689134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9920.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	36.75	34.21	39.93	55.5	43.36	31.98	38.86	29.94	54.48	62.76	66.33	36.97
Merged-chr10-80798009-3	chr10	80797903	80798103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	623.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	29.07	38.23	23.96	40.22	49.91	37.0	33.88	40.49	50.35	63.77	56.28	48.56
Merged-chr15-79883469-3	chr15	79883356	79883556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8952.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	21.4	26.66	28.52	22.52	36.0	49.86	24.25	28.93	29.11	37.66	59.29	24.43
Merged-chr16-94601799-3	chr16	94601687	94601887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-9632.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	107.01	114.95	97.55	112.21	109.64	128.88	68.43	102.11	140.83	167.7	207.53	89.59
Merged-chr8-123040255-3	chr8	123040147	123040347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	2037.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	24.23	13.83	26.24	18.5	25.36	26.65	12.95	28.26	38.35	23.1	42.21	18.8
Merged-chr12-32795899-3	chr12	32795771	32795971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24464.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	93.68	84.01	99.83	111.01	101.46	112.57	82.05	110.3	127.26	124.02	116.58	77.38
Merged-chr18-67610914-3	chr18	67610809	67611009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	30446.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	17.36	12.32	12.55	17.29	48.68	19.44	22.92	31.57	33.24	51.21	49.24	16.29
Merged-chr16-58556298-3	chr16	58556197	58556397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32044.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	17.77	14.59	23.39	30.97	33.96	43.27	39.86	43.57	24.98	23.6	43.72	16.29
Merged-chr8-94533009-3	chr8	94532921	94533121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153507)	promoter-TSS (NM_153507)	-7.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	28.67	32.95	38.22	24.13	41.73	44.84	37.2	55.29	39.73	41.67	42.71	27.57
Merged-chrX-169978909-1	chrX	169978809	169979009	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029457)	promoter-TSS (NR_029457)	8.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	121.75	96.4	163.31	76.12
Merged-chr13-93499670-3	chr13	93499556	93499756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	152.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	36.34	38.48	48.49	47.46	39.27	79.65	66.77	64.07	61.37	50.71	89.44	53.88
Merged-chr13-112987709-3	chr13	112987619	112987819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081062)	promoter-TSS (NM_001081062)	-83.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	71.88	61.88	92.98	68.37	43.77	59.89	38.86	87.73	70.41	55.23	95.47	66.73
Merged-chr5-125339239-3	chr5	125339151	125339351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1843.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	35.53	27.67	44.5	28.56	54.41	50.8	33.88	53.94	41.89	37.66	46.73	25.06
Merged-chr3-40531581-3	chr3	40531485	40531685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8673.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	26.25	28.93	19.4	37.4	43.77	47.04	34.55	38.27	64.32	40.67	69.85	29.76
Merged-chrX-20819355-3	chrX	20819255	20819455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29188.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	19.79	12.58	20.54	14.48	19.23	27.59	21.92	28.18	30.29	16.07	41.71	5.64
Merged-chr11-117119593-3	chr11	117119465	117119665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	4393.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	22.61	17.1	39.36	51.48	27.0	24.46	34.55	23.36	32.85	44.19	25.12	32.89
Merged-chr1-172590602-3	chr1	172590503	172590703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029084)	promoter-TSS (NM_029084)	-35.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	85.2	70.93	87.85	97.33	64.23	93.44	67.43	70.74	133.75	111.97	85.92	65.16
Merged-chr2-122780610-3	chr2	122780509	122780709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-1390.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	24.23	23.14	35.37	43.84	38.86	28.54	39.2	54.08	36.58	38.66	51.76	29.13
Merged-chr1-191073226-3	chr1	191073132	191073332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	10211.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	224.11	195.94	227.61	220.41	198.42	315.77	202.29	220.29	267.89	313.31	346.21	170.73
Merged-chr17-83918619-1	chr17	83918519	83918719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-64201.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	16.96	13.33	7.99	2.41	3.68	8.47	5.98	4.63	4.13	11.55	13.06	9.08
Merged-chr11-101732908-3	chr11	101732819	101733019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-37.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	111.04	99.1	123.22	74.41	98.18	114.14	73.74	87.67	115.65	119.5	104.01	71.74
Merged-chr16-22027381-3	chr16	22027300	22027500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027488, intron 7 of 16)	intron (NR_027488, intron 7 of 16)	17916.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	44.82	52.82	33.09	30.57	51.96	63.66	37.2	47.58	59.6	76.82	59.8	45.74
Merged-chr7-64357650-3	chr7	64357560	64357760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	MLTR14|LTR|ERV1	16435.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	31.9	26.16	55.9	53.89	40.5	37.0	67.43	102.08	41.5	30.63	102.0	40.72
Merged-chr11-61174631-2	chr11	61174537	61174737	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004143, intron 1 of 12)	CpG	422.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	9.69	12.07	20.54	8.04	19.23	18.5	14.62	16.15	20.46	18.58	31.66	16.29
Merged-chr4-53116046-3	chr4	53115939	53116139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43856.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	109.43	68.42	92.41	81.24	108.82	100.97	78.06	105.14	96.77	86.36	152.75	59.52
Merged-chr7-127449200-3	chr7	127449117	127449317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	-59.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	38.76	28.17	33.66	32.98	23.73	42.02	18.93	19.6	40.71	46.19	38.69	23.49
Merged-chr8-94341002-3	chr8	94340904	94341104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 11 of 24)	intron (NM_019415, intron 11 of 24)	11796.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	21.8	23.64	11.41	26.95	20.86	32.3	17.94	31.93	32.65	24.6	36.18	24.43
Merged-chr1-191741227-3	chr1	191741133	191741333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22838.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	22.21	23.39	27.95	24.94	21.68	6.59	11.96	20.94	29.5	28.12	32.66	25.69
Merged-chr2-117352477-3	chr2	117352377	117352577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9600.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	56.13	36.22	47.92	51.88	68.73	46.1	50.49	53.8	69.23	57.24	89.44	34.15
Merged-chr8-64850012-3	chr8	64849912	64850112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-88.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	38.36	36.72	41.07	33.78	46.23	49.54	47.17	65.13	52.71	71.8	102.51	29.45
Merged-chr10-34210184-3	chr10	34210080	34210280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2629.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	63.4	41.0	76.44	67.17	47.87	49.23	58.13	61.77	61.96	45.69	65.32	31.33
Merged-chr2-5951435-3	chr2	5951320	5951520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-49.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	38.76	21.13	38.22	22.52	51.14	46.72	29.23	32.24	54.88	60.25	83.41	37.28
Merged-chr16-36631803-3	chr16	36631712	36631912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	34265.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	48.46	36.72	29.66	27.75	50.73	77.14	51.49	36.34	69.63	55.23	39.7	24.12
Merged-chr7-28528143-3	chr7	28528052	28528252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5316.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	21.4	20.37	16.54	23.33	27.82	29.79	12.62	19.15	30.88	26.61	22.11	15.35
Merged-chr17-27856440-3	chr17	27856330	27856530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080769)	promoter-TSS (NM_001080769)	-77.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	35.94	43.77	35.37	24.94	49.5	53.31	23.92	34.35	43.07	51.21	55.78	36.34
Merged-chr13-63431292-3	chr13	63431200	63431400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347515, intron 1 of 15)	(CCCCG)n|Simple_repeat|Simple_repeat	445.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	167.98	146.89	146.61	142.78	167.73	188.77	138.18	142.46	115.26	98.91	126.63	80.2
Merged-chr13-48968338-3	chr13	48968220	48968420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033268)	promoter-TSS (NM_001033268)	208.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	50.88	45.78	43.35	50.27	41.73	51.43	51.49	47.55	104.05	67.78	102.0	47.3
Merged-chr6-121245844-3	chr6	121245749	121245949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	75.11	63.13	92.98	80.44	88.37	82.78	56.8	91.49	111.33	86.36	116.58	59.83
Merged-chr2-155385265-3	chr2	155385187	155385387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	3431.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	40.38	52.57	34.23	43.84	26.59	48.29	18.6	30.31	45.63	40.67	40.2	27.57
Merged-chr13-56615459-3	chr13	56615358	56615558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5872.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	29.48	20.37	35.94	23.73	22.91	34.49	18.93	24.53	27.14	17.07	29.65	14.72
Merged-chr9-32591899-3	chr9	32591791	32591991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50439.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	30.28	21.13	25.67	19.71	27.82	28.54	17.94	38.13	36.78	28.62	34.17	16.29
Merged-chr3-100409464-3	chr3	100409372	100409572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16933.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	101.35	79.23	91.84	97.33	104.32	128.25	70.42	85.96	141.22	149.13	188.93	70.48
Merged-chr3-27192465-3	chr3	27192432	27192632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	ID_B1|SINE|B4	9528.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	12.92	8.05	29.09	20.51	24.55	21.32	35.21	37.96	20.85	13.05	23.11	9.08
Merged-chr1-180766856-3	chr1	180766769	180766969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40826.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	39.17	28.17	32.52	28.15	47.46	64.91	28.9	25.09	49.57	55.73	62.31	33.21
Merged-chr19-26607368-3	chr19	26607284	26607484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	CpG	2224.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	30.69	44.27	44.5	39.01	54.82	46.72	34.88	64.96	72.18	67.28	71.35	31.64
Merged-chr10-81430673-7	chr10	81430590	81430790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3517.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	29.88	27.42	17.68	16.09	17.59	32.93	17.61	19.57	33.04	23.6	26.13	14.1
Merged-chr16-18348194-3	chr16	18348127	18348327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272029)	promoter-TSS (NM_001272029)	45.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	51.28	35.72	69.03	71.99	52.37	59.89	59.79	78.31	53.89	42.18	72.36	25.69
Merged-chr1-91034751-3	chr1	91034673	91034873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-18671.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	90.05	44.52	66.74	68.37	77.32	90.31	62.78	73.85	94.02	98.41	117.08	48.24
Merged-chr18-84952097-3	chr18	84951996	84952196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-572.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	44.42	49.3	45.07	39.82	38.05	46.41	30.56	45.25	81.82	78.83	79.39	53.57
Merged-chr4-129783028-3	chr4	129782942	129783142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-37437.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	40.38	24.15	28.52	35.8	37.64	49.23	24.91	40.74	29.31	39.16	24.62	15.98
Merged-chr6-29609889-3	chr6	29609807	29610007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347079)	promoter-TSS (NM_001347079)	-58.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	70.26	55.84	64.46	57.92	72.0	98.15	35.21	67.43	87.33	84.35	65.83	47.3
Merged-chr6-119377782-3	chr6	119377674	119377874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	10960.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	24.63	23.39	34.23	32.18	32.73	23.2	25.91	32.75	53.7	38.16	42.71	21.93
Merged-chr10-75677040-3	chr10	75676948	75677148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33040.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	26.25	21.63	46.78	47.06	59.73	62.4	37.2	62.3	47.21	56.74	55.78	40.1
Merged-chr5-142817873-3	chr5	142817780	142817980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122730)	promoter-TSS (NM_001122730)	-493.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	125.98	113.94	124.36	85.67	126.41	143.93	88.36	85.43	151.45	179.75	168.83	104.0
Merged-chr4-119195333-3	chr4	119195233	119195433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024462)	promoter-TSS (NM_024462)	23.0	NM_024462	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	79.55	61.37	85.0	84.86	88.78	102.85	48.5	80.05	122.54	102.93	140.7	80.82
Merged-chr9-56995041-3	chr9	56994943	56995143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019651)	promoter-TSS (NM_019651)	75.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	35.13	32.95	30.23	37.0	29.86	31.36	24.25	22.35	29.31	30.63	33.16	26.94
Merged-chr11-107339557-3	chr11	107339412	107339612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	131208.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	19.38	23.9	30.23	36.2	38.46	26.97	38.2	34.77	32.45	39.16	43.21	22.24
Merged-chr14-120325811-3	chr14	120325722	120325922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	19370.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	47.65	29.93	55.9	41.83	69.14	52.99	46.17	76.43	74.94	44.19	73.86	36.65
Merged-chr4-95162478-3	chr4	95162380	95162580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110258.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	61.38	45.78	60.47	68.37	62.18	47.35	53.81	65.97	86.94	83.35	119.59	70.48
Merged-chr4-116507578-3	chr4	116507486	116507686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008389)	promoter-TSS (NM_008389)	37.0	NM_008389	16351.0	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	110.24	106.9	109.53	109.8	104.73	144.24	64.77	98.05	129.03	104.44	146.72	65.16
Merged-chrM-12596-2	chrM	12506	12706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											43182.31	44785.06	53580.14	57548.75	41482.69	50324.68	48981.59	49023.95	0.0	0.0	0.0	0.0
Merged-chr17-34261687-3	chr17	34261568	34261768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1559.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	149.81	170.54	144.9	141.98	101.87	159.61	73.08	68.1	202.0	163.18	166.32	144.1
Merged-chr1-75317700-3	chr1	75317612	75317812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-75.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	315.36	312.15	367.94	323.77	366.97	412.66	316.89	349.26	439.01	516.16	595.94	300.11
Merged-chr17-73009008-3	chr17	73008893	73009093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90688.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	21.0	21.38	26.81	22.52	28.64	33.24	25.91	37.49	22.03	30.63	38.19	13.78
Merged-chr16-11253870-1	chr16	11253770	11253970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_035466)	TTS (NR_035466)	455.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	16.56	17.1	19.97	10.86	16.36	13.17	12.62	12.42	19.67	19.58	16.58	15.35
Merged-chr14-65593066-3	chr14	65592990	65593190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253812)	promoter-TSS (NM_001253812)	22.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	67.84	48.04	57.62	39.42	56.87	69.61	37.54	43.43	79.07	63.27	82.41	47.62
Merged-chr19-53529037-3	chr19	53528934	53529134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085390)	promoter-TSS (NM_001085390)	-284.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	196.24	200.97	175.7	181.39	236.46	270.3	160.44	184.54	226.98	234.99	230.14	139.4
Merged-chr16-10962235-3	chr16	10962140	10962340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30881.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	27.05	15.59	29.09	6.44	24.96	31.04	14.95	27.62	31.27	20.08	29.65	12.22
Merged-chr11-102218993-3	chr11	102218882	102219082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284248, intron 4 of 28)	intron (NM_001284248, intron 4 of 28)	11168.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	56.13	41.5	85.0	63.55	87.96	55.5	63.78	66.34	58.81	69.29	80.4	50.75
Merged-chr2-153741218-3	chr2	153741119	153741319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	-68.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	138.5	137.84	148.32	142.78	179.19	191.91	102.97	130.79	189.02	181.26	234.66	118.1
Merged-chr18-34220877-3	chr18	34220684	34220884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-200.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	39.57	39.99	42.21	52.69	51.96	61.77	39.86	47.75	56.45	43.18	52.76	39.78
Merged-chr8-115506827-3	chr8	115506733	115506933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	200061.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	25.84	18.61	41.07	35.39	38.05	39.51	16.94	38.36	36.98	39.16	34.17	21.3
Merged-chr10-14210235-3	chr10	14210132	14210332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243853.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	22.21	19.37	37.08	31.37	35.18	34.49	24.91	35.41	44.06	29.62	41.2	19.74
Merged-chr13-41883852-3	chr13	41883753	41883953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033545, intron 1 of 6)	MIR3|SINE|MIR	17938.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	41.99	33.96	54.76	68.37	42.96	33.55	56.14	52.93	42.48	38.16	48.74	23.18
Merged-chr11-55458372-3	chr11	55458277	55458477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2831.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	32.71	30.94	38.22	28.56	46.23	34.81	30.56	37.71	45.04	44.69	60.3	34.77
Merged-chr4-149955138-3	chr4	149955026	149955226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029035)	promoter-TSS (NM_029035)	-120.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	143.75	140.35	126.64	109.4	153.41	195.36	131.21	101.41	187.44	195.32	165.82	135.64
Merged-chr17-86447307-3	chr17	86447208	86447408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-160130.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	67.03	54.58	80.43	65.96	83.05	82.16	53.81	90.79	73.56	53.22	78.89	49.5
Merged-chr11-59902466-2	chr11	59902369	59902569	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19030.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	2.02	5.03	9.7	6.03	28.64	21.01	21.92	17.83	16.72	14.06	16.58	13.78
Merged-chr19-11321314-3	chr19	11321215	11321415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276398, exon 7 of 7)	3' UTR (NM_001276398, exon 7 of 7)	13380.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	33.92	34.46	28.52	18.9	49.91	46.1	37.54	27.76	33.63	44.19	28.64	13.78
Merged-chr9-44734423-3	chr9	44734401	44734601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153537, intron 1 of 21)	CpG	697.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	30.28	32.7	17.11	12.47	22.91	63.97	19.6	11.72	42.88	57.74	52.26	21.3
Merged-chr13-21716336-3	chr13	21716230	21716430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	-82.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	59.76	54.08	43.35	59.93	47.05	88.11	27.24	45.65	71.79	109.46	79.89	57.64
Merged-chr11-77686070-3	chr11	77685961	77686161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024205)	promoter-TSS (NM_001024205)	-78.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	171.61	162.49	159.16	110.6	148.1	174.03	130.54	128.19	198.85	181.76	197.98	108.39
Merged-chr10-99194823-3	chr10	99194725	99194925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68406.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	29.48	20.37	26.81	26.14	28.64	32.93	33.55	37.77	42.29	38.16	33.67	31.01
Merged-chr19-32712255-3	chr19	32712127	32712327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	71.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	40.38	52.32	60.47	38.21	48.68	52.05	57.8	40.29	44.65	39.16	54.27	34.77
Merged-chr6-38900324-3	chr6	38900235	38900435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-18651.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	61.78	46.78	66.74	68.37	58.09	64.6	26.57	63.0	73.17	84.35	87.43	63.59
Merged-chr7-7136757-3	chr7	7136667	7136867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029584)	promoter-TSS (NM_029584)	-12.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	32.71	35.72	50.77	43.84	58.5	56.44	47.5	84.59	62.35	59.25	96.98	44.48
Merged-chr6-31080813-3	chr6	31080711	31080911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17718.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	18.57	26.16	29.09	19.71	41.32	27.59	44.84	54.28	35.01	32.13	36.18	27.88
Merged-chr1-191242327-1	chr1	191242227	191242427	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17873.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	2.42	5.03	5.7	1.61	10.23	3.14	3.65	11.72	4.13	1.51	4.52	3.13
Merged-chr4-32274961-3	chr4	32274859	32275059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142476.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	54.11	34.46	53.05	81.65	56.87	54.88	57.8	82.32	67.07	61.76	74.37	55.45
Merged-chr16-52145016-3	chr16	52144896	52145096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	113447.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	24.23	27.17	34.8	37.81	37.64	22.89	33.55	43.46	26.16	31.63	32.66	27.25
Merged-chr18-39800385-3	chr18	39800267	39800467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26870.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	77.12	102.87	71.88	82.05	95.73	142.99	94.67	99.73	115.46	126.03	146.22	57.64
Merged-chr1-37427395-3	chr1	37427288	37427488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198006, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	2715.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	19.79	14.09	17.68	28.96	19.64	14.74	18.93	14.44	23.8	27.11	22.11	23.81
Merged-chr2-121449171-3	chr2	121449065	121449265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-33.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	279.02	274.92	273.82	253.79	317.46	383.5	238.17	252.56	359.15	427.79	484.39	237.14
Merged-chr2-57238345-3	chr2	57238266	57238466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010274)	promoter-TSS (NM_010274)	-16.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	130.83	116.71	131.78	121.87	132.96	111.95	105.96	163.94	175.84	146.61	246.72	111.52
Merged-chr17-24960814-3	chr17	24960693	24960893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198937)	promoter-TSS (NM_198937)	-170.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	197.05	145.13	151.17	196.68	231.14	225.15	161.1	218.44	204.56	254.57	237.17	117.16
Merged-chr2-172420659-3	chr2	172420560	172420760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-19918.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	60.17	63.64	78.15	45.45	80.18	136.72	95.33	58.18	103.46	110.46	72.36	37.91
Merged-chr9-90244586-3	chr9	90244484	90244684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26185.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	41.19	23.39	42.21	24.53	58.09	73.38	86.36	48.7	91.46	62.76	96.98	31.01
Merged-chr17-29398308-3	chr17	29398174	29398374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37360.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	64.2	41.0	68.45	26.14	38.46	62.71	26.57	34.79	52.12	54.23	48.74	26.94
Merged-chr3-54814802-3	chr3	54814702	54814902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5a|LINE|L1	-7011.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	31.09	28.93	39.93	49.07	40.91	25.71	28.23	37.4	33.83	20.08	27.64	22.56
Merged-chr6-120820427-3	chr6	120820318	120820518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	2280.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	26.65	22.89	41.64	28.56	41.73	66.48	38.53	34.88	41.3	47.2	44.22	27.88
Merged-chr10-44729188-3	chr10	44729088	44729288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-270440.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	32.71	37.73	43.93	23.33	34.36	48.6	30.23	27.22	63.33	43.68	54.27	17.54
Merged-chr12-17748235-3	chr12	17748147	17748347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	57438.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	25.84	19.37	50.2	38.21	44.18	43.27	29.23	44.89	30.88	36.15	31.66	17.54
Merged-chr7-114302922-3	chr7	114302823	114303023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26807.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	30.69	19.12	28.52	46.25	15.55	20.38	16.28	20.05	15.74	22.59	28.14	15.35
Merged-chr15-77970955-3	chr15	77970809	77971009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-85.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	62.99	71.69	37.08	39.01	39.68	70.55	36.54	35.94	77.3	71.3	56.78	47.3
Merged-chr4-83314678-3	chr4	83314592	83314792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	MIR|SINE|MIR	9497.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	23.02	10.56	46.78	30.97	49.91	44.53	59.13	67.74	41.11	46.19	65.83	36.03
Merged-chr3-104863886-3	chr3	104863786	104863986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253702)	promoter-TSS (NM_001253702)	619.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	28.67	23.9	23.39	24.94	40.09	45.78	28.23	46.79	40.12	68.79	59.8	34.15
Merged-chr11-71008481-3	chr11	71008371	71008571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291147, exon 7 of 7)	3' UTR (NM_001291147, exon 7 of 7)	-4039.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	61.38	57.6	50.2	26.14	62.59	71.81	27.57	26.69	77.1	67.28	53.26	30.7
Merged-chr6-86526221-3	chr6	86526117	86526317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-28.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	26.65	30.43	28.52	18.9	25.77	35.43	27.24	24.87	46.03	52.72	54.77	22.24
Merged-chr10-77536927-3	chr10	77536804	77537004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	MTD|LTR|ERVL-MaLR	6556.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	72.28	62.88	72.45	89.29	82.23	85.92	89.02	99.08	103.65	108.96	135.67	94.61
Merged-chr2-150835913-1	chr2	150835813	150836013	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	6657.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.81	3.02	6.85	4.42	1.23	2.51	7.97	11.44	1.77	3.01	1.51	4.39
Merged-chr7-106760198-3	chr7	106760108	106760308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6822.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	42.8	20.63	61.04	66.36	46.23	38.88	46.17	44.92	62.35	45.19	66.33	40.72
Merged-chr8-70700661-3	chr8	70700568	70700768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010592)	TTS (NM_010592)	2929.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	76.32	55.08	54.19	56.31	56.46	60.83	55.47	54.22	64.91	76.32	83.91	53.26
Merged-chr14-31405910-3	chr14	31405806	31406006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11771.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	17.77	8.8	17.11	23.33	33.14	27.91	29.9	41.41	22.03	19.58	20.6	18.8
Merged-chr11-29548207-3	chr11	29548097	29548297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-157.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	41.19	32.7	17.11	34.59	40.91	37.0	28.23	34.91	54.48	38.16	64.32	32.89
Merged-chr12-73671705-3	chr12	73671602	73671802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	AmnSINE1|SINE|Deu	86906.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	14.13	15.59	27.38	27.35	38.46	31.67	35.21	43.99	38.94	36.15	44.22	18.8
Merged-chr1-165682652-3	chr1	165682552	165682752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25442.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	30.69	14.84	61.61	31.77	31.91	30.1	42.19	58.91	31.08	23.6	61.3	20.68
Merged-chr11-5261768-3	chr11	5261677	5261877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032396)	promoter-TSS (NM_032396)	-167.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	54.92	56.09	63.32	61.13	65.87	88.74	56.47	69.84	93.03	88.37	114.06	51.69
Merged-chr10-66998973-3	chr10	66998861	66999061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6114.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	65.82	53.07	58.76	55.1	97.78	89.37	62.78	90.48	130.01	99.42	111.05	68.29
Merged-chr4-41465034-3	chr4	41464948	41465148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	-100.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	226.53	238.2	269.83	253.39	272.05	290.37	215.25	284.27	297.2	366.04	361.29	211.45
Merged-chr9-59728104-3	chr9	59727977	59728177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20313.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	31.09	16.35	39.36	25.74	34.77	47.66	50.49	51.93	31.67	20.59	27.13	25.37
Merged-chr8-45333750-3	chr8	45333642	45333842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-546.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	90.85	84.01	73.59	68.78	99.41	100.03	82.05	121.57	120.37	63.27	129.14	64.22
Merged-chr4-141545982-3	chr4	141545896	141546096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030695)	promoter-TSS (NR_030695)	-166.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	109.43	121.24	106.68	105.38	124.37	159.92	92.01	79.93	156.17	164.19	158.28	87.4
Merged-chr9-101034691-4	chr9	101034628	101034828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025835, exon 1 of 15)	exon (NM_025835, exon 1 of 15)	156.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	55.32	82.5	62.75	43.84	43.77	61.46	79.39	51.9	84.38	81.84	91.95	59.83
Merged-chr5-76303976-3	chr5	76303889	76304089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305222)	promoter-TSS (NM_001305222)	-487.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	67.43	72.69	61.04	51.88	91.64	104.11	72.08	97.46	119.19	112.97	152.75	64.53
Merged-chr7-4950785-1	chr7	4950685	4950885	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13563.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	4.04	0.5	0.0	1.61	20.05	25.71	17.61	19.09	3.54	1.0	0.5	0.94
Merged-chr4-129803579-3	chr4	129803489	129803689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16890.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	66.22	46.78	53.05	47.46	63.41	69.3	31.89	50.92	69.04	73.81	70.85	41.98
Merged-chr8-126867800-3	chr8	126867703	126867903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18783.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	36.34	50.81	65.6	47.06	67.5	100.03	88.36	50.72	118.8	104.94	93.96	49.5
Merged-chr1-139454680-3	chr1	139454586	139454786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-87.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	155.46	139.35	114.66	137.95	164.87	192.22	107.62	171.0	198.26	211.89	263.8	88.03
Merged-chr5-73630387-3	chr5	73630302	73630502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153568, intron 1 of 4)	intron (NM_153568, intron 1 of 4)	2019.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	24.63	20.63	46.78	41.43	55.23	24.15	39.53	72.25	32.45	23.1	60.8	36.34
Merged-chr6-38968139-3	chr6	38968042	38968242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	49156.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	43.21	34.71	60.47	53.09	49.09	42.96	32.55	51.73	46.42	30.13	60.8	30.7
Merged-chr4-34466021-3	chr4	34465917	34466117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-84598.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	20.59	24.15	29.66	34.59	31.91	40.45	25.91	54.73	22.82	31.13	57.79	18.17
Merged-chr19-47855622-3	chr19	47855513	47855713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010362, intron 2 of 5)	intron (NM_010362, intron 2 of 5)	640.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	54.92	63.13	45.07	34.19	58.09	74.32	47.17	77.89	56.65	54.23	65.32	33.21
Merged-chr19-61227858-3	chr19	61227764	61227964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009970, intron 1 of 11)	CpG-7695	554.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	60.57	79.99	57.62	64.35	69.96	62.09	114.93	65.52	69.63	53.73	86.93	47.3
Merged-chr7-98809582-3	chr7	98809496	98809696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25516.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	85.6	42.01	92.98	80.04	102.68	64.28	95.33	114.93	109.16	92.39	184.41	90.53
Merged-chr11-103116166-3	chr11	103116078	103116278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-147.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	166.36	170.79	147.75	148.41	191.87	203.2	136.52	153.56	224.42	248.04	219.58	137.52
Merged-chr10-39171896-3	chr10	39171806	39172006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8112.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	30.69	31.19	29.09	21.32	28.64	42.02	26.91	37.04	30.88	45.69	52.26	22.24
Merged-chr3-88446756-3	chr3	88446650	88446850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013658, intron 10 of 14)	HAL1|LINE|L1	-5799.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	86.01	68.67	94.13	75.21	104.73	103.17	64.44	79.85	88.51	76.32	133.16	48.87
Merged-chr6-37223173-3	chr6	37223069	37223269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76807.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	50.47	60.37	69.03	113.82	96.55	68.99	95.67	112.6	102.67	97.91	137.68	89.59
Merged-chr10-43758380-3	chr10	43758283	43758483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	12225.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	37.96	19.87	39.93	45.05	32.73	22.89	39.86	50.19	27.34	27.62	50.75	28.19
Merged-chr17-24167119-3	chr17	24167018	24167218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	1691.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	77.12	49.8	71.88	39.42	87.55	72.12	60.12	81.0	95.98	92.89	78.39	56.7
Merged-chr7-46958540-3	chr7	46958463	46958663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-45.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	50.07	34.21	49.63	40.62	66.68	37.0	37.54	36.39	39.93	41.67	40.2	21.3
Merged-chr1-91216631-3	chr1	91216531	91216731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	-33673.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	35.53	28.42	32.52	51.08	31.91	35.43	33.55	40.71	59.01	46.7	86.93	34.77
Merged-chr19-5273103-3	chr19	5272987	5273187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153129)	promoter-TSS (NM_153129)	32.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	54.51	47.29	41.64	41.43	61.77	63.66	25.58	46.32	63.14	55.23	70.85	36.65
Merged-chr19-16015356-3	chr19	16015235	16015435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	30260.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	23.82	15.59	27.95	20.51	23.73	13.48	17.27	18.17	27.93	25.11	41.71	21.62
Merged-chr7-16314082-3	chr7	16313996	16314196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	4513.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	93.68	84.26	46.21	60.73	80.18	112.57	44.84	76.57	124.9	101.93	122.1	74.56
Merged-chr5-30921709-3	chr5	30921586	30921786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133918)	TTS (NM_133918)	127.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	45.63	55.34	55.33	57.51	42.96	63.03	46.84	47.27	72.38	55.23	58.29	37.91
Merged-chr10-45067140-3	chr10	45067042	45067242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011156)	promoter-TSS (NM_011156)	-72.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	68.24	74.45	103.82	81.65	81.82	65.54	49.49	101.52	71.79	67.28	92.96	51.06
Merged-chr8-4370339-3	chr8	4370248	4370448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20760.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	52.9	44.77	45.64	43.44	54.41	57.38	43.18	65.55	72.18	68.79	114.57	50.12
Merged-chr11-75679198-3	chr11	75679096	75679296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-63.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	72.28	93.32	69.03	72.8	90.82	139.23	57.13	75.9	123.72	109.46	146.22	74.56
Merged-chr5-104021930-3	chr5	104021836	104022036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053262)	promoter-TSS (NM_053262)	-140.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	103.37	104.64	82.72	108.59	127.23	148.32	105.96	130.68	105.62	136.07	117.08	68.61
Merged-chr1-153414468-3	chr1	153414351	153414551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-218.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	63.8	69.67	42.78	82.45	39.27	80.9	45.84	45.14	67.46	83.35	67.84	44.17
Merged-chr11-94629741-3	chr11	94629634	94629834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133807)	promoter-TSS (NM_133807)	-90.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	42.4	34.96	38.79	37.4	45.41	57.7	30.23	37.21	53.89	42.18	63.82	45.74
Merged-chr4-49632047-3	chr4	49631981	49632181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163263)	promoter-TSS (NM_001163263)	21.0	NM_182999	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	110.64	118.22	134.06	132.73	125.19	128.25	123.24	145.09	140.04	129.04	142.71	96.17
Merged-chr11-4637693-3	chr11	4637584	4637784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029291)	promoter-TSS (NM_029291)	-109.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	56.94	38.48	31.95	28.56	44.59	43.59	22.92	34.12	51.73	39.16	58.79	32.27
Merged-chr10-68249527-3	chr10	68249424	68249624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29202.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	104.58	88.29	79.86	62.74	81.0	106.61	76.73	49.77	92.64	89.88	75.87	39.78
Merged-chr12-29291157-3	chr12	29291066	29291266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149237.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	74.7	70.68	92.98	117.84	126.0	116.96	134.53	162.81	167.97	181.76	237.17	139.72
Merged-chr2-178414487-3	chr2	178414464	178414664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085501)	promoter-TSS (NM_001085501)	30.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	24.23	27.17	33.09	35.8	36.0	51.11	48.5	56.97	33.83	40.17	51.76	26.94
Merged-chr4-106678973-3	chr4	106678871	106679071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028209)	promoter-TSS (NM_028209)	-27.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	63.8	46.78	43.93	55.1	72.0	75.57	28.9	53.8	74.54	61.26	108.03	38.85
Merged-chr11-114694163-3	chr11	114694032	114694232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 3 of 13)	intron (NM_053273, intron 3 of 13)	18664.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	37.55	27.67	35.37	40.22	53.18	44.21	18.27	38.33	59.2	32.13	55.27	32.58
Merged-chr12-100200210-4	chr12	100200124	100200324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	80.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	61.38	59.11	78.72	40.62	58.5	76.2	85.7	84.84	88.12	85.36	94.97	56.07
Merged-chr11-58954600-3	chr11	58954498	58954698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	-86.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	48.05	44.27	44.5	47.06	44.18	68.67	31.89	47.22	87.53	67.78	62.31	38.85
Merged-chr2-79255923-2	chr2	79255827	79256027	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 1 of 27)	intron (NM_010576, intron 1 of 27)	501.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	10.9	14.34	19.4	37.0	18.41	16.62	27.57	31.6	17.51	28.12	20.6	11.59
Merged-chr4-134762591-3	chr4	134762496	134762696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	5408.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	62.18	39.24	58.19	47.06	61.77	53.93	67.1	74.47	65.89	45.19	70.35	50.12
Merged-chr5-3502780-3	chr5	3502698	3502898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41035.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	140.12	146.14	188.25	169.33	159.55	199.43	174.06	188.61	223.44	222.43	275.36	139.4
Merged-chr4-145246885-3	chr4	145246780	145246980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-10.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	33.52	28.67	18.83	39.82	35.59	43.27	23.25	27.93	59.01	45.19	69.34	47.93
Merged-chr2-117272199-1	chr2	117272099	117272299	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026620)	TTS (NM_026620)	22460.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	6.46	8.8	5.13	2.82	3.68	8.78	6.64	3.36	13.57	13.05	1.51	2.82
Merged-chr13-111944326-3	chr13	111944223	111944423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76387.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	37.55	22.13	37.65	36.2	61.37	32.61	41.19	58.09	36.78	30.63	40.7	28.19
Merged-chr15-80035053-3	chr15	80034957	80035157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20249.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	58.95	55.34	81.58	50.68	72.0	78.39	63.11	77.05	79.27	73.31	80.4	31.64
Merged-chr8-47676041-1	chr8	47675941	47676141	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-882.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	14.54	10.56	7.42	13.67	15.96	22.26	10.63	10.35	28.72	23.6	26.63	11.9
Merged-chr12-13269240-4	chr12	13269141	13269341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027706, exon 1 of 52)	exon (NM_027706, exon 1 of 52)	114.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	21.8	35.97	26.24	25.34	32.32	37.0	54.48	41.05	20.85	17.57	34.17	23.49
Merged-chr17-17583536-3	chr17	17583422	17583622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	40967.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	15.75	8.05	18.25	27.75	22.91	13.48	11.96	20.72	27.34	20.59	39.7	13.47
Merged-chr6-89280769-3	chr6	89280710	89280910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	96.51	117.21	109.53	147.21	173.46	198.81	126.56	185.5	162.27	146.11	279.38	119.67
Merged-chr17-27925777-3	chr17	27925678	27925878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	16472.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	24.23	26.16	23.39	20.11	25.77	22.89	23.58	36.81	27.34	26.61	21.61	27.57
Merged-chr11-109413794-3	chr11	109413667	109413867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12179.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	27.86	51.31	46.78	20.51	60.14	70.24	45.51	40.77	66.28	73.81	50.75	31.01
Merged-chr13-67755141-3	chr13	67755039	67755239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001130)	promoter-TSS (NM_001001130)	-5.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	41.59	21.88	36.51	47.86	37.23	41.08	50.82	46.26	43.07	32.13	53.77	47.93
Merged-chr6-43546714-3	chr6	43546618	43546818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	104289.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	19.79	13.08	33.66	23.33	32.32	28.85	20.26	39.67	40.32	25.61	39.19	20.05
Merged-chr7-64142154-1	chr7	64142054	64142254	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11681.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	11.71	9.31	6.28	8.45	15.14	11.92	8.64	7.79	17.51	17.57	13.57	12.22
Merged-chr2-36230504-3	chr2	36230409	36230609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	83.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	35.53	26.66	43.93	46.66	39.27	45.47	36.87	52.57	31.67	34.65	46.73	25.06
Merged-chr19-37495460-3	chr19	37495323	37495523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30169.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	42.4	36.47	35.94	28.96	49.91	53.31	33.22	29.69	44.25	52.22	69.34	33.52
Merged-chr11-29219249-1	chr11	29219149	29219349	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_134034, exon 16 of 16)	3' UTR (NM_134034, exon 16 of 16)	28023.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	2.42	0.0	0.0	0.0	42.14	30.73	28.57	33.39	1.57	0.0	1.0	1.57
Merged-chr17-22424211-3	chr17	22424109	22424309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331195)	promoter-TSS (NM_001331195)	7.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	41.99	25.91	37.65	50.68	46.23	37.0	46.5	48.98	51.14	56.74	63.82	36.34
Merged-chr2-60843246-3	chr2	60843163	60843363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	38175.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	45.63	67.66	45.64	39.01	87.14	101.28	50.49	77.5	88.12	52.22	103.51	46.99
Merged-chr7-25239373-3	chr7	25239280	25239480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1529.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	96.1	105.89	117.51	112.62	87.14	149.26	77.4	98.27	135.12	119.5	154.26	62.97
Merged-chr5-31494713-3	chr5	31494653	31494853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	12.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	41.99	47.04	74.16	55.91	41.73	82.47	43.51	58.57	57.83	60.25	82.91	29.76
Merged-chr5-145139996-3	chr5	145139832	145140032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310771)	promoter-TSS (NM_001310771)	157.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	28.67	29.93	14.83	21.32	34.36	32.93	17.94	17.55	30.68	37.16	31.66	16.92
Merged-chr13-51847430-2	chr13	51847331	51847531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011817, exon 2 of 4)	exon (NM_011817, exon 2 of 4)	756.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	17.36	21.63	18.25	20.51	14.73	15.05	12.62	18.48	25.96	23.1	32.66	15.04
Merged-chr9-106332907-1	chr9	106332807	106333007	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-35725.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	0.75	0.0	0.0	0.41	1.88	0.0	0.45	21.44	25.61	43.72	23.81
Merged-chr10-70040469-3	chr10	70040367	70040567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56654.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	24.63	25.91	22.25	41.43	20.05	14.11	12.62	29.61	37.96	25.11	37.18	26.94
Merged-chr5-5360040-3	chr5	5359946	5360146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20205.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	58.95	62.38	92.41	102.96	65.05	66.48	78.39	116.38	51.73	34.65	44.22	36.65
Merged-chr5-64884420-3	chr5	64884305	64884505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48294.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	93.68	87.53	100.97	100.55	86.32	97.21	88.03	95.27	97.16	111.47	101.5	76.75
Merged-chr12-12270685-3	chr12	12270572	12270772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	8533.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	115.49	102.12	96.98	93.71	85.09	147.38	69.76	74.61	140.04	139.59	105.52	61.09
Merged-chr16-91688816-3	chr16	91688712	91688912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021720)	promoter-TSS (NM_021720)	-84.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	110.64	107.65	76.44	76.42	130.91	148.01	72.08	77.36	158.14	156.66	157.78	60.15
Merged-chr9-7595395-3	chr9	7595287	7595487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23991.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	65.41	74.96	91.84	96.93	89.18	96.58	95.67	129.87	102.87	56.24	112.05	54.2
Merged-chr14-118938849-3	chr14	118938721	118938921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	889.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	31.9	18.86	19.4	34.99	34.36	27.59	20.93	24.98	30.09	30.13	27.64	17.23
Merged-chr11-118363243-3	chr11	118363150	118363350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7839.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	31.5	26.91	30.8	41.02	31.91	73.06	42.19	27.59	47.8	53.73	33.16	35.4
Merged-chr5-150522625-3	chr5	150522525	150522725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009765)	promoter-TSS (NM_009765)	4.0	NM_001081001	12190.0	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	59.36	48.8	83.86	78.83	53.59	79.02	28.57	76.79	83.59	63.77	111.05	45.42
Merged-chrX-140543211-3	chrX	140543121	140543321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_122039)	promoter-TSS (NR_122039)	-553.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	95.7	82.25	92.41	129.51	111.28	96.27	107.29	112.96	121.16	106.45	209.03	101.19
Merged-chr16-29993193-3	chr16	29993098	29993298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14074.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	37.96	29.93	18.83	30.97	42.14	39.2	20.26	34.23	32.06	30.13	31.15	15.98
Merged-chr8-122430446-3	chr8	122430354	122430554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2486.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	74.3	73.95	95.84	78.83	84.68	109.12	55.47	67.23	117.23	132.56	129.64	85.52
Merged-chr6-136941379-3	chr6	136941271	136941471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	132.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	18.57	18.61	14.83	24.13	12.27	18.5	20.26	17.66	22.82	22.09	20.6	18.17
Merged-chr4-59565985-3	chr4	59565898	59566098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-15565.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	39.57	34.96	31.38	43.84	51.55	27.28	37.54	55.71	48.58	31.63	27.13	25.69
Merged-chr17-70852368-3	chr17	70852280	70852480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164075)	promoter-TSS (NM_001164075)	-646.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	83.18	82.75	74.73	74.41	64.64	108.81	77.4	64.65	89.89	94.9	83.91	50.44
Merged-chr7-16781277-3	chr7	16781190	16781390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009201)	promoter-TSS (NM_009201)	-56.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	46.44	28.93	22.25	28.96	43.77	42.33	25.58	40.43	41.3	45.19	42.21	23.81
Merged-chr16-17911400-3	chr16	17911289	17911489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022408)	promoter-TSS (NM_022408)	-41.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	90.05	113.69	93.55	118.25	91.23	135.78	60.46	105.95	145.94	155.65	164.31	103.38
Merged-chr15-83172291-3	chr15	83172208	83172408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-100.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	139.71	141.86	178.55	164.1	179.19	201.31	108.62	163.63	181.74	243.02	221.59	135.02
Merged-chr19-29647770-3	chr19	29647679	29647879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362131, intron 1 of 14)	intron (NM_001362131, intron 1 of 14)	636.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	17.77	25.4	17.68	25.34	13.09	24.77	22.26	19.82	15.14	18.08	33.16	12.84
Merged-chr7-113716324-1	chr7	113716224	113716424	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-49674.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.81	0.0	2.85	6.44	4.09	2.51	10.3	8.19	0.79	1.0	1.51	3.13
Merged-chr11-115187900-3	chr11	115187809	115188009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	422.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	39.57	41.25	53.05	24.53	42.14	62.09	33.88	39.93	69.43	63.77	92.46	35.71
Merged-chr11-80169821-3	chr11	80169731	80169931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	B3|SINE|B2	-14041.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	73.49	54.33	77.01	38.21	76.09	106.93	64.11	49.85	77.1	85.36	81.4	28.82
Merged-chr11-70562419-3	chr11	70562321	70562521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	-460.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	29.88	19.12	27.95	20.91	27.41	22.89	11.29	21.98	39.73	18.08	27.13	11.9
Merged-chr9-7837077-3	chr9	7836985	7837185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291503)	promoter-TSS (NM_001291503)	-28.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	263.68	271.15	254.42	281.94	267.14	277.83	268.06	259.6	379.02	371.56	442.69	181.07
Merged-chr8-11556928-2	chr8	11556913	11557113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011919, exon 1 of 2)	exon (NM_011919, exon 1 of 2)	556.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	10.09	7.55	13.69	10.05	6.14	10.66	14.62	8.21	10.82	7.53	15.07	3.13
Merged-chr11-70021599-3	chr11	70021506	70021706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007864, intron 1 of 19)	CpG	3001.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	74.3	59.61	77.58	62.34	75.28	75.57	41.19	51.5	102.47	128.04	109.54	56.07
Merged-chr6-137697033-3	chr6	137696936	137697136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38046.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	17.36	17.61	17.11	33.78	50.73	35.43	38.53	45.2	44.65	35.15	59.29	26.31
Merged-chr13-93237829-3	chr13	93237711	93237911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45394.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	28.27	10.56	25.67	19.71	25.77	22.26	19.27	28.71	29.5	32.13	30.65	12.84
Merged-chr16-87706293-3	chr16	87706192	87706392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	7338.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	63.4	54.33	94.13	83.66	58.5	60.83	52.48	118.21	52.91	53.73	81.9	44.8
Merged-chr9-106368552-3	chr9	106368458	106368658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-74.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	55.32	46.28	26.81	30.16	54.41	40.45	14.28	38.05	82.81	70.29	69.34	29.13
Merged-chr1-131910403-3	chr1	131910308	131910508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175294)	promoter-TSS (NM_175294)	-50.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	86.01	81.75	83.29	96.13	111.69	138.91	62.78	95.16	137.09	135.57	172.35	78.94
Merged-chr5-36696733-3	chr5	36696633	36696833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081232)	promoter-TSS (NM_001081232)	-712.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	20.19	16.85	25.67	16.89	31.91	22.89	15.61	25.01	28.52	26.11	36.68	13.16
Merged-chr12-52604914-3	chr12	52604812	52605012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2590.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	50.07	54.33	36.51	45.45	61.37	72.75	44.84	48.73	54.68	40.17	59.8	30.07
Merged-chr8-22185761-3	chr8	22185673	22185873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004140)	promoter-TSS (NM_001004140)	46.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	46.03	56.59	42.78	69.98	58.5	61.46	93.34	63.25	57.63	66.78	101.0	50.75
Merged-chr18-46574404-3	chr18	46574287	46574487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	146.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	31.09	33.96	33.09	53.09	37.64	43.27	36.54	41.64	22.23	17.57	37.18	30.07
Merged-chr10-8741176-3	chr10	8741081	8741281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	144889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	15.34	14.59	21.68	22.93	22.91	26.03	13.62	29.72	19.28	32.64	42.71	23.81
Merged-chr18-4055713-3	chr18	4055632	4055832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4A|LTR|ERV1	-110100.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	18.98	16.35	32.52	21.32	29.86	18.81	25.58	22.12	38.16	40.17	49.24	36.97
Merged-chr17-74316454-3	chr17	74316378	74316578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146223)	promoter-TSS (NM_001146223)	-45.0	NM_001146223	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	69.45	64.89	81.0	81.65	104.32	101.28	60.46	91.12	100.51	98.41	104.52	72.99
Merged-chr7-101310826-3	chr7	101310722	101310922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6264.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	117.5	116.46	89.56	99.75	105.55	131.7	66.77	67.21	116.64	134.56	138.69	67.35
Merged-chr1-65177667-3	chr1	65177586	65177786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1456.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	48.46	29.68	46.21	34.99	37.64	44.21	51.49	47.47	61.76	48.2	57.79	30.07
Merged-chr18-46745945-3	chr18	46745828	46746028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009681, intron 1 of 5)	intron (NM_009681, intron 1 of 5)	4052.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	18.17	28.93	36.51	26.95	31.09	36.06	28.57	36.08	39.14	20.08	30.15	24.75
Merged-chr7-45923084-3	chr7	45922987	45923187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1661.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	159.9	149.41	128.92	109.4	135.82	220.44	141.84	117.0	207.11	204.86	203.0	94.29
Merged-chr7-132859879-3	chr7	132859779	132859979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	654.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	26.25	26.66	29.66	25.34	39.68	37.0	21.59	38.05	44.25	26.61	47.23	27.88
Merged-chr17-28232624-3	chr17	28232526	28232726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-128.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	110.24	108.66	80.43	87.68	125.19	150.51	60.46	87.67	122.14	119.5	132.15	60.15
Merged-chr13-8996110-3	chr13	8996003	8996203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027000)	promoter-TSS (NM_027000)	-91.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	148.19	145.13	113.52	143.99	150.55	185.01	97.99	152.27	219.11	191.8	206.52	130.32
Merged-chr5-114773543-3	chr5	114773449	114773649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019834)	promoter-TSS (NM_019834)	-57.0	NM_001347400	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	59.76	59.36	76.44	58.72	137.87	158.04	76.07	105.31	109.75	110.97	110.04	64.85
Merged-chrUn_JH584304-35963-1	chrUn_JH584304	35863	36063	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	23726.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.29	13.56	12.06	18.48
Merged-chr11-87442864-3	chr11	87442747	87442947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	15256.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	63.8	51.06	37.65	31.77	58.09	87.17	43.85	39.53	63.73	60.75	49.24	33.52
Merged-chr11-8597100-3	chr11	8597009	8597209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	67426.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	46.44	35.47	58.76	53.49	87.96	82.47	71.08	84.53	74.74	76.82	61.3	65.79
Merged-chr17-47629558-3	chr17	47629432	47629632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1158.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	71.07	39.74	38.22	30.57	51.55	82.78	28.9	30.79	91.46	90.38	65.32	41.35
Merged-chrX-53753067-3	chrX	53752952	53753152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001200013, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	4779.0	NM_001200013	75514.0	Mm.116929	NM_001200013	ENSMUSG00000054727	1700013H16Rik	Slx2|Xlr6	RIKEN cDNA 1700013H16 gene	protein-coding	29.07	24.15	21.68	39.42	30.68	26.34	30.23	37.65	28.52	30.63	42.21	27.57
Merged-chr12-101976001-6	chr12	101975946	101976146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	72.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	41.19	59.36	46.78	59.53	49.91	50.17	63.11	43.37	46.22	64.27	53.26	46.99
Merged-chr12-83929359-3	chr12	83929251	83929451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7417.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	60.57	36.22	46.78	38.21	41.32	55.5	17.94	44.38	36.58	28.12	22.11	19.74
Merged-chr5-146261156-3	chr5	146261061	146261261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 2 of 12)	LSU-rRNA_Hsa|rRNA|rRNA	29911.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	288.31	471.36	290.93	304.47	103.5	126.68	107.29	33.79	87.53	96.4	86.43	135.96
Merged-chr10-18237441-1	chr10	18237341	18237541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2460.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	6.06	4.02	4.56	0.8	19.23	20.07	20.26	12.45	11.21	6.53	7.54	3.76
Merged-chr11-3136820-2	chr11	3136678	3136878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 23 of 32)	intron (NM_030207, intron 23 of 32)	12757.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	17.77	26.41	20.54	24.13	42.14	13.8	20.93	17.38	0.2	0.5	0.0	0.0
Merged-chr19-55293322-3	chr19	55293239	55293439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 17 of 21)	intron (NM_027976, intron 17 of 21)	22697.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	41.99	38.74	42.21	26.14	24.55	42.02	26.24	14.58	57.24	53.73	58.79	25.37
Merged-chr1-86442220-3	chr1	86442109	86442309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15880.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	39.17	35.72	34.8	39.42	45.41	41.71	31.22	44.58	52.52	52.72	56.78	35.09
Merged-chr12-33045839-3	chr12	33045741	33045941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 13 of 19)	intron (NM_001024478, intron 13 of 19)	47034.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	67.03	57.6	71.88	49.47	59.32	69.61	53.15	76.74	140.44	158.16	152.25	107.45
Merged-chr12-91756875-3	chr12	91756782	91756982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	29554.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	48.46	37.98	39.36	64.35	63.41	69.93	53.48	59.58	72.77	55.73	69.85	40.72
Merged-chr2-122771195-3	chr2	122771086	122771286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027888)	promoter-TSS (NR_027888)	-527.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	65.01	62.13	85.57	88.89	101.05	145.5	92.01	104.44	117.82	107.45	160.29	52.63
Merged-chr15-50703969-3	chr15	50703849	50704049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	185100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	59.76	59.61	31.38	27.75	67.91	121.98	32.55	33.59	90.48	106.95	61.81	24.75
Merged-chr16-94569081-2	chr16	94568984	94569184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1122.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	48.86	58.35	43.93	42.63	62.18	68.36	46.17	31.99	52.91	51.72	58.79	34.15
Merged-chr14-7997386-3	chr14	7997281	7997481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3199.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	32.3	32.95	22.82	38.61	53.59	57.07	35.21	50.66	56.84	44.19	41.2	36.97
Merged-chr11-85812664-3	chr11	85812562	85812762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	19726.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	35.53	37.98	46.78	59.53	62.59	51.11	38.2	47.47	53.11	48.7	46.23	34.46
Merged-chr5-138683632-1	chr5	138683532	138683732	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60773.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	6.46	8.55	1.14	4.83	17.59	15.05	14.28	6.17	27.73	17.57	19.6	8.46
Merged-chr19-29380740-3	chr19	29380640	29380840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	13302.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	20.19	24.4	30.23	25.74	35.18	36.69	25.24	32.36	24.98	31.13	34.17	26.94
Merged-chr5-143180827-3	chr5	143180711	143180911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045482)	promoter-TSS (NM_001045482)	-36.0	NM_001045482	57782.0	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	84.8	83.76	126.07	102.96	79.37	127.31	72.75	75.42	119.59	91.38	98.99	66.1
Merged-chr19-53273574-3	chr19	53273454	53273654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-18349.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	90.05	55.08	87.28	76.42	113.73	117.9	84.37	118.07	127.26	125.02	173.36	64.53
Merged-chr7-81860243-3	chr7	81860147	81860347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1246.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	74.7	63.89	116.37	101.35	89.18	52.99	67.76	93.11	41.89	38.16	76.88	42.6
Merged-chr4-57948115-3	chr4	57948016	57948216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8295.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	43.61	37.23	59.33	52.69	45.41	90.62	88.36	91.49	92.25	56.74	122.61	59.83
Merged-chr9-115309737-1	chr9	115309637	115309837	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024222, intron 1 of 15)	CpG	684.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	16.96	8.55	15.97	14.88	19.64	25.4	10.96	11.66	31.67	16.07	30.65	23.49
Merged-chr17-35997154-3	chr17	35997059	35997259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	2655.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	77.53	73.7	81.0	83.26	75.68	56.44	34.55	50.22	89.3	84.35	79.39	50.12
Merged-chr8-117288121-3	chr8	117288020	117288220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	31101.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	23.02	18.11	39.36	32.98	43.77	43.9	46.84	57.98	32.85	31.13	52.26	29.13
Merged-chr5-92107462-3	chr5	92107351	92107551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-23707.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	29.48	29.93	27.38	43.84	19.64	16.62	24.25	24.42	24.39	30.63	44.72	25.06
Merged-chr6-137696667-3	chr6	137696559	137696759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38423.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	16.56	17.36	15.97	15.69	36.82	25.4	38.53	32.33	27.34	24.6	31.66	17.23
Merged-chr5-121389106-3	chr5	121389007	121389207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3492.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	95.3	76.46	130.06	111.81	92.87	122.92	85.04	85.79	116.44	90.38	112.56	95.23
Merged-chr9-52288065-3	chr9	52287964	52288164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119953.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	35.13	32.45	49.06	51.08	44.18	39.2	24.58	47.72	37.17	28.12	61.81	34.46
Merged-chr11-4135262-3	chr11	4135159	4135359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027859)	promoter-TSS (NM_027859)	99.0	NM_027859	71673.0	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	59.76	60.87	53.62	58.32	51.96	65.85	61.78	49.37	58.22	69.29	74.37	49.18
Merged-chr9-21592843-3	chr9	21592747	21592947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-16.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	66.22	55.84	66.74	83.26	98.59	118.53	45.84	92.66	83.79	81.84	81.4	47.93
Merged-chr7-99469781-3	chr7	99469684	99469884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028145, intron 2 of 6)	intron (NM_028145, intron 2 of 6)	3780.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	25.84	17.61	25.67	33.38	24.55	15.37	24.58	41.07	36.19	20.59	32.66	30.07
Merged-chr15-57912143-3	chr15	57912042	57912242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167679)	promoter-TSS (NM_001167679)	-57.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	147.79	144.38	154.02	148.41	155.05	191.59	109.28	184.01	192.16	202.35	254.26	161.65
Merged-chr9-124125765-3	chr9	124125646	124125846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	4203.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	72.68	39.99	59.33	53.89	69.14	62.71	51.49	65.61	80.45	69.79	118.08	57.64
Merged-chr15-76251927-3	chr15	76251813	76252013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3722.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	25.84	35.47	51.34	28.56	35.59	30.1	25.58	32.33	38.94	34.65	41.2	20.68
Merged-chr12-91736428-3	chr12	91736330	91736530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50006.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	65.01	58.61	66.17	52.29	74.87	88.74	67.43	115.35	90.08	53.73	108.03	38.85
Merged-chr13-60876690-3	chr13	60876583	60876783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-12267.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	19.79	14.84	31.95	40.22	34.36	31.98	25.91	30.81	33.04	31.63	35.17	19.11
Merged-chr3-142882124-3	chr3	142882056	142882256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-152.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	169.19	167.77	132.35	174.15	229.1	238.0	177.71	182.66	323.16	324.86	439.67	215.21
Merged-chr5-67822257-3	chr5	67822156	67822356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	25175.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	118.72	104.89	158.59	141.57	129.69	158.04	128.55	166.43	122.93	114.48	204.01	73.3
Merged-chrX-155622519-1	chrX	155622419	155622619	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001093750, intron 1 of 2)	intron (NM_001093750, intron 1 of 2)	808.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	5.25	3.27	0.0	6.84	10.64	16.62	3.99	9.59	4.92	11.05	5.02	1.25
Merged-chr1-172514133-3	chr1	172514028	172514228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7002.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	133.66	121.24	118.08	146.4	126.0	143.93	101.98	147.9	198.06	171.72	223.6	104.94
Merged-chr13-107021897-3	chr13	107021794	107021994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015471)	promoter-TSS (NR_015471)	220.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	18.57	14.34	22.82	10.46	13.91	20.07	12.62	17.3	27.54	23.1	28.14	20.36
Merged-chr11-3539313-3	chr11	3539183	3539383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284429)	promoter-TSS (NM_001284429)	9.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	77.93	40.75	67.88	69.98	100.64	83.72	65.11	95.16	58.42	40.67	110.55	49.5
Merged-chr3-84883983-3	chr3	84883889	84884089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	B4|SINE|B4	19844.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	36.75	28.67	22.82	26.55	29.86	36.69	36.87	28.79	52.52	48.2	55.78	35.4
Merged-chr6-38641402-3	chr6	38641310	38641510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4171.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	40.78	25.66	54.76	43.04	24.14	29.79	24.25	30.73	26.75	16.07	36.68	29.45
Merged-chr18-80313078-3	chr18	80312988	80313188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51166.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	95.3	85.52	100.4	137.15	74.87	61.46	75.73	91.23	79.27	70.8	101.5	57.95
Merged-chr15-34495338-3	chr15	34495258	34495458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008287)	promoter-TSS (NM_008287)	47.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	48.86	65.15	53.62	77.62	64.64	64.28	60.79	86.52	64.71	62.26	80.4	37.28
Merged-chr10-80261062-3	chr10	80260958	80261158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-46.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	106.2	98.6	128.35	113.42	119.05	114.14	87.36	117.76	152.63	142.6	159.79	86.46
Merged-chr8-111300347-3	chr8	111300232	111300432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146218)	promoter-TSS (NM_146218)	-110.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	189.38	207.76	219.06	221.61	240.96	302.28	179.37	240.48	259.82	314.82	370.83	179.82
Merged-chr13-55600034-3	chr13	55599939	55600139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001311137, exon 1 of 5)	5' UTR (NM_001311137, exon 1 of 5)	143.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	22.21	21.88	30.23	19.31	26.18	36.06	26.57	32.33	37.17	36.15	60.8	31.95
Merged-chr7-143822944-3	chr7	143822837	143823037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007856)	promoter-TSS (NM_007856)	-85.0	NM_030221	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	221.28	197.45	228.18	176.16	213.55	274.69	197.64	188.16	255.69	275.66	280.39	141.91
Merged-chr2-52884445-3	chr2	52884352	52884552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	26584.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	31.09	21.13	29.66	47.86	35.59	29.48	27.9	38.78	40.91	24.1	44.22	23.49
Merged-chr2-145952971-1	chr2	145952871	145953071	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	18187.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	2.02	1.26	0.0	0.0	0.0	0.0	0.66	0.67	40.71	54.73	49.75	30.07
Merged-chr19-8898029-3	chr19	8897923	8898123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-34.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	109.83	81.24	140.33	107.39	105.14	115.71	61.12	97.35	142.21	104.94	155.77	78.0
Merged-chr6-58596521-3	chr6	58596422	58596622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011920)	promoter-TSS (NM_011920)	-150.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	32.71	28.17	37.65	43.04	37.64	42.02	27.9	43.96	45.43	38.16	51.76	20.99
Merged-chr4-43757365-3	chr4	43757247	43757447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040667, exon 3 of 4)	non-coding (NR_040667, exon 3 of 4)	5488.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	27.05	33.45	41.64	43.04	32.73	45.47	40.86	52.43	36.98	29.62	19.09	32.27
Merged-chr9-90272737-3	chr9	90272652	90272852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1983.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	47.65	45.53	58.19	67.57	74.87	68.67	76.07	102.42	143.78	110.97	193.96	93.67
Merged-chr14-121379278-5	chr14	121379153	121379353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-23.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	46.84	26.16	37.65	35.8	42.14	51.11	34.88	48.9	70.02	72.3	122.61	49.18
Merged-chr13-42246075-3	chr13	42245936	42246136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55440.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	11.71	24.65	13.12	20.11	10.64	19.44	16.94	17.75	19.08	33.14	17.08	15.66
Merged-chr12-55434062-3	chr12	55433954	55434154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35229.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	17.77	16.85	21.68	20.51	21.68	25.71	24.25	17.66	20.26	25.11	19.6	18.17
Merged-chr8-71272599-3	chr8	71272486	71272686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	4.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	179.29	162.99	223.62	202.31	174.69	190.03	134.53	180.45	240.16	236.99	218.08	123.43
Merged-chr5-3494585-3	chr5	3494562	3494762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-49171.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	17.36	9.06	20.54	13.27	42.96	55.19	34.55	26.05	34.03	27.62	45.73	23.49
Merged-chr15-73595305-3	chr15	73595205	73595405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	1221.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	27.86	18.61	17.68	23.73	25.36	27.28	9.3	27.08	31.67	36.15	49.75	17.54
Merged-chr13-21787393-3	chr13	21787295	21787495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	-93.0	NM_178202	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	156.27	132.56	174.56	172.54	188.19	179.99	116.26	170.92	221.67	195.32	254.26	129.38
Merged-chr16-58481379-3	chr16	58481269	58481469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	42057.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	122.35	72.44	105.53	104.97	162.0	185.32	156.45	128.55	100.7	154.65	159.29	100.87
Merged-chr17-87315397-3	chr17	87315244	87315444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32458.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	11.71	16.6	25.67	17.7	27.82	20.07	11.96	16.09	23.6	17.57	19.6	10.65
Merged-chr5-144223670-3	chr5	144223569	144223769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356992)	promoter-TSS (NM_001356992)	-54.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	123.56	98.35	125.5	129.91	100.64	105.36	114.93	120.0	121.16	126.53	175.87	84.27
Merged-chr11-20201196-3	chr11	20201070	20201270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-242.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	218.45	261.34	268.69	298.03	271.64	307.61	282.01	266.92	312.54	361.52	415.55	196.73
Merged-chr1-52500566-3	chr1	52500476	52500676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008667)	promoter-TSS (NM_008667)	-128.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	100.55	133.31	119.23	98.94	124.78	145.18	129.88	112.82	172.5	157.16	184.41	100.87
Merged-chr15-99972735-3	chr15	99972604	99972804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-76.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	54.51	51.81	53.62	44.64	55.64	53.31	36.87	37.91	51.14	61.76	39.7	41.66
Merged-chr4-126753618-3	chr4	126753566	126753766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011986)	promoter-TSS (NM_011986)	99.0	NM_001355412	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	56.13	57.85	61.04	70.79	68.32	69.61	62.78	51.84	69.82	79.33	54.27	47.3
Merged-chr6-34862624-3	chr6	34862538	34862738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-508.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	19.38	16.1	24.53	15.69	26.59	22.58	18.93	22.18	30.09	16.57	21.1	25.06
Merged-chr12-100778955-3	chr12	100778847	100779047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-110.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	66.63	67.91	63.89	29.36	65.05	136.09	46.17	40.15	61.17	88.87	63.82	20.05
Merged-chr16-58507082-1	chr16	58506982	58507182	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	B3|SINE|B2	16344.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.04	2.77	3.99	2.41	4.09	1.25	0.66	0.84	4.52	4.02	7.03	1.25
Merged-chr9-104972991-3	chr9	104972880	104973080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 7 of 15)	intron (NM_028719, intron 7 of 15)	-80288.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	75.11	78.23	105.53	82.45	91.64	81.84	56.14	108.81	75.72	51.72	116.58	57.95
Merged-chr1-105993967-3	chr1	105993876	105994076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	CpG	3570.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	50.88	50.31	30.23	48.67	54.82	73.38	46.84	53.58	50.55	66.28	80.9	34.46
Merged-chr12-9030150-3	chr12	9030070	9030270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	173.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	118.31	132.05	132.35	102.16	131.32	157.73	101.98	142.18	152.24	170.21	180.39	98.68
Merged-chr16-73647623-3	chr16	73647522	73647722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	694445.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	25.84	25.91	29.66	40.62	71.59	68.99	39.53	79.77	80.84	112.97	86.43	52.0
Merged-chr8-115555649-3	chr8	115555551	115555751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151243.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	41.59	37.73	25.67	57.11	50.32	34.49	42.52	58.04	45.24	23.1	61.3	37.59
Merged-chr11-101984837-3	chr11	101984721	101984921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-30.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	76.32	55.08	54.19	49.07	66.68	58.95	29.56	45.34	95.79	97.91	96.98	52.32
Merged-chr19-12440541-3	chr19	12440423	12440623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	12618.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	55.72	69.67	50.77	56.71	80.18	75.26	66.77	58.79	71.0	56.24	85.92	39.47
Merged-chr3-51333458-3	chr3	51333369	51333569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	7175.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	78.34	61.12	86.14	75.61	94.5	100.34	62.12	118.37	106.6	85.36	140.19	63.91
Merged-chr7-64001769-3	chr7	64001652	64001852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62837.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	59.36	42.01	59.9	38.21	68.32	57.07	35.87	75.48	87.53	69.29	94.47	43.86
Merged-chr2-73003252-3	chr2	73003163	73003363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22817.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	16.15	15.34	26.81	14.08	27.82	22.89	19.27	37.88	26.75	21.09	20.1	19.11
Merged-chr7-116608585-3	chr7	116608502	116608702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	104233.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	49.67	45.78	31.38	29.36	40.5	57.38	21.26	39.14	49.76	63.27	43.21	31.01
Merged-chr13-3779968-3	chr13	3779860	3780060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	24358.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	60.17	66.91	82.15	63.95	58.91	39.51	36.54	59.41	45.04	55.23	51.25	23.18
Merged-chr1-133025364-3	chr1	133025265	133025465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	51.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	40.38	32.45	50.77	27.35	41.32	46.41	28.57	30.03	70.22	61.76	72.86	46.99
Merged-chr2-157428621-3	chr2	157428545	157428745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	4352.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	54.92	66.91	63.32	37.0	79.37	116.96	68.43	52.07	79.27	94.9	56.28	23.18
Merged-chr19-47865703-3	chr19	47865620	47865820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-74.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	260.85	256.06	211.07	234.48	229.92	263.71	199.3	218.1	202.2	204.36	290.94	134.7
Merged-chr4-3938697-3	chr4	3938589	3938789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019969)	promoter-TSS (NM_019969)	-199.0	NR_104355	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	298.0	293.28	293.21	311.7	332.19	375.03	335.82	352.32	419.14	395.16	559.26	257.51
Merged-chr9-35050197-3	chr9	35050123	35050323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-66505.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	96.91	76.97	144.33	112.62	122.73	167.76	129.88	120.22	136.3	145.11	162.8	94.92
Merged-chr4-3607414-3	chr4	3607309	3607509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32530.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	39.57	23.64	26.24	44.64	28.23	38.57	12.62	29.33	54.88	40.67	42.71	38.85
Merged-chr7-107594578-3	chr7	107594466	107594666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-485.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	25.04	15.09	14.83	9.65	20.05	29.48	16.61	17.86	21.44	23.1	34.17	12.22
Merged-chr12-70111594-3	chr12	70111482	70111682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	47.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	17.36	23.14	16.54	27.35	20.86	14.42	19.6	22.82	24.0	15.06	22.61	10.65
Merged-chr19-21144841-3	chr19	21144764	21144964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40154.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	26.25	27.67	47.92	41.43	47.87	59.27	60.46	87.0	63.33	59.25	99.49	40.72
Merged-chr16-11175699-3	chr16	11175603	11175803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	690.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	53.3	116.46	51.34	53.49	57.68	163.06	57.13	42.84	107.59	120.51	99.49	36.65
Merged-chr10-20312415-3	chr10	20312334	20312534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-35.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	180.9	178.08	130.06	159.67	217.64	246.47	118.59	145.18	233.67	244.53	253.75	124.99
Merged-chr18-34759413-5	chr18	34759333	34759533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357456, exon 1 of 5)	5' UTR (NM_001357456, exon 1 of 5)	106.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	20.19	38.23	33.66	39.82	20.86	32.93	30.56	18.39	36.58	41.17	34.67	30.7
Merged-chr9-7868993-3	chr9	7868872	7869072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4198.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	34.73	31.44	31.95	34.99	23.32	40.14	17.94	24.48	43.86	50.21	37.18	30.7
Merged-chr9-98563657-3	chr9	98563564	98563764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015827)	promoter-TSS (NM_015827)	-53.0	NR_029444	75881.0	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	204.72	182.36	182.55	217.59	220.1	206.02	216.24	215.41	235.63	233.98	288.93	200.18
Merged-chr7-17027020-3	chr7	17026908	17027108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	906.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	16.15	20.88	33.09	22.52	25.77	15.99	18.93	28.32	49.76	36.65	47.23	33.21
Merged-chr11-46795817-3	chr11	46795705	46795905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14994.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	50.07	34.46	38.79	37.81	56.87	73.69	42.85	49.68	45.83	30.63	46.23	17.54
Merged-chr8-72303835-3	chr8	72303758	72303958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15204.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	44.01	26.41	26.81	43.04	52.77	26.03	44.84	42.53	35.6	42.68	39.7	25.06
Merged-chr9-100642857-2	chr9	100642759	100642959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-589.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	23.42	15.34	29.66	18.1	21.68	21.64	9.3	19.32	31.86	17.57	31.15	16.92
Merged-chr1-91251581-3	chr1	91251496	91251696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1030.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	118.72	120.73	128.35	94.52	121.5	195.67	147.15	123.42	150.86	153.14	178.38	84.58
Merged-chr19-26606709-3	chr19	26606603	26606803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	CpG	1543.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	22.61	19.12	25.1	51.88	33.96	26.03	29.9	26.36	21.44	25.11	27.64	18.17
Merged-chr5-90771556-3	chr5	90771465	90771665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-870.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	41.19	14.59	19.4	19.31	34.77	17.25	27.9	44.55	34.42	30.13	51.25	31.01
Merged-chr5-113634062-3	chr5	113633962	113634162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9541.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	89.24	58.35	84.43	68.78	96.55	107.24	99.98	115.96	88.31	86.36	126.63	69.55
Merged-chr11-96975029-3	chr11	96974923	96975123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2665.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	43.61	28.93	27.38	13.27	41.73	46.41	16.61	33.64	42.48	35.65	42.21	25.69
Merged-chr2-148487083-3	chr2	148486975	148487175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43540.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	36.34	29.68	21.11	30.97	49.91	38.57	44.18	64.6	36.39	32.13	37.69	33.83
Merged-chr14-10453123-3	chr14	10453019	10453219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	339.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	41.59	42.51	48.49	16.09	47.05	71.18	24.58	35.5	67.46	77.83	65.83	26.63
Merged-chr9-24512136-3	chr9	24512071	24512271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9031.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	30.69	26.66	59.9	50.68	29.05	23.52	45.84	61.15	35.01	29.12	46.73	32.58
Merged-chr6-124309125-3	chr6	124309010	124309210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053094, exon 4 of 17)	exon (NM_053094, exon 4 of 17)	4459.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	40.38	22.89	33.66	49.07	69.55	35.43	57.47	58.91	54.68	53.22	68.84	51.06
Merged-chr14-26579523-3	chr14	26579432	26579632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-18.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	50.88	45.02	54.19	45.05	53.18	65.85	39.86	51.84	94.02	72.81	80.4	41.35
Merged-chr5-24165037-3	chr5	24164942	24165142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346582)	promoter-TSS (NM_001346582)	79.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	48.05	65.65	62.18	69.18	55.64	50.49	48.5	56.27	77.5	59.25	60.8	54.2
Merged-chr15-6579405-3	chr15	6579280	6579480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	-467.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	67.43	49.05	59.33	36.2	64.23	68.05	42.19	44.27	63.14	40.67	50.75	28.51
Merged-chr4-62360540-3	chr4	62360456	62360656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175090)	promoter-TSS (NM_175090)	40.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	311.73	313.66	323.45	308.49	278.6	357.47	279.02	297.87	354.04	379.59	447.71	222.73
Merged-chr12-85284413-3	chr12	85284294	85284494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3959.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	47.65	25.91	46.21	34.19	29.86	43.59	39.86	49.43	41.89	41.17	59.8	25.06
Merged-chr12-55080343-4	chr12	55080231	55080431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028314)	promoter-TSS (NM_028314)	-165.0	NM_011899	24067.0	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	38.76	42.01	37.08	43.84	58.09	53.93	67.43	31.15	52.32	77.83	35.17	31.95
Merged-chr19-29210163-3	chr19	29210062	29210262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41641.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	37.55	50.81	29.66	29.76	29.86	48.92	33.88	28.35	51.73	44.19	50.75	20.05
Merged-chr17-78247215-3	chr17	78247108	78247308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	46960.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	30.69	31.69	29.09	39.01	21.27	35.12	19.27	56.41	39.53	23.6	43.72	22.56
Merged-chr17-23980712-3	chr17	23980608	23980808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5478.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	60.97	58.35	56.48	88.89	72.82	71.49	54.81	80.86	93.23	76.82	83.41	57.64
Merged-chr1-20508111-1	chr1	20508011	20508211	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 34 of 66)	intron (NM_153179, intron 34 of 66)	109946.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	7.27	0.0	1.14	4.83	17.18	11.29	20.93	30.93	3.15	0.5	8.04	5.95
Merged-chr14-58321514-3	chr14	58321402	58321602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	248816.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	75.91	66.91	138.62	109.4	118.64	103.48	110.28	125.86	102.47	105.44	120.6	60.46
Merged-chr17-71259930-2	chr17	71259829	71260029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	51082.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	30.69	21.88	26.24	25.34	40.09	64.6	31.89	58.6	0.2	1.51	5.53	0.0
Merged-chr14-61971313-3	chr14	61971204	61971404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-288931.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	50.47	38.48	74.16	60.73	61.37	44.21	44.18	44.97	52.91	40.67	41.2	37.59
Merged-chr7-111122769-3	chr7	111122664	111122864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-89.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	96.91	104.38	83.86	94.11	112.5	143.62	76.4	107.24	119.0	129.04	203.0	109.33
Merged-chr4-3835641-3	chr4	3835535	3835735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026147)	promoter-TSS (NM_026147)	20.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	138.5	159.97	103.25	135.54	159.96	216.68	145.16	155.33	176.04	178.25	197.98	126.25
Merged-chr1-156986422-3	chr1	156986330	156986530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46804.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	78.74	56.59	82.72	57.51	54.0	78.08	41.19	57.98	81.04	68.29	101.5	50.75
Merged-chr2-167761776-3	chr2	167761655	167761855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70578.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	59.76	68.67	73.59	86.88	113.73	110.38	96.66	98.36	122.14	109.46	142.71	59.83
Merged-chr1-72243948-3	chr1	72243907	72244107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155355)	promoter-TSS (NR_155355)	14.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	73.89	91.05	71.31	76.02	94.91	105.99	94.67	105.67	124.11	123.52	182.4	66.73
Merged-chr7-41633028-3	chr7	41632922	41633122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-509.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	112.26	104.13	106.68	152.03	148.5	153.02	114.93	190.74	182.53	158.67	255.26	115.28
Merged-chr3-122290906-3	chr3	122290806	122291006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2797.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	172.02	146.89	139.19	174.55	154.23	146.75	124.23	156.67	158.53	159.67	230.14	97.74
Merged-chr10-60268973-3	chr10	60268893	60269093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	-8635.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	25.04	18.36	17.68	18.5	19.64	24.77	18.93	42.22	39.53	36.65	41.71	23.49
Merged-chr7-127850307-3	chr7	127850217	127850417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8509.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	46.44	39.49	59.33	46.66	65.05	148.01	87.36	102.22	148.7	99.92	166.32	82.7
Merged-chr1-82798530-2	chr1	82798429	82798629	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30073.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.25	5.03	19.97	7.24	22.09	17.87	34.55	38.13	24.59	23.6	25.12	22.24
Merged-chr10-40141127-3	chr10	40141038	40141238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1116.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	67.43	39.74	66.17	85.67	67.91	61.15	89.02	97.01	75.13	44.69	99.49	56.39
Merged-chr4-54494981-1	chr4	54494881	54495081	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-452964.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.04	5.79	3.99	0.8	4.91	3.14	14.28	6.98	0.98	0.5	0.0	0.63
Merged-chr1-133129383-3	chr1	133129295	133129495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1771.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	26.25	24.9	23.39	25.34	35.59	45.47	23.92	37.49	48.19	31.13	55.27	30.07
Merged-chr18-23884642-3	chr18	23884568	23884768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-70020.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	200.28	204.74	212.21	242.12	274.92	277.2	332.5	271.37	319.62	334.9	449.22	207.07
Merged-chr13-62856412-3	chr13	62856297	62856497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007994, intron 1 of 6)	intron (NM_007994, intron 1 of 6)	1973.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	29.07	17.61	22.82	20.51	29.05	19.44	16.94	24.36	39.73	39.16	49.75	36.65
Merged-chr9-62341240-3	chr9	62341109	62341309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009672)	promoter-TSS (NM_009672)	-134.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	59.76	51.06	57.05	54.7	57.68	60.83	51.15	60.39	64.71	38.16	60.8	41.04
Merged-chr7-27356087-3	chr7	27355952	27356152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-44.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	123.56	90.8	118.65	153.24	154.23	165.88	111.28	119.64	154.01	164.19	221.59	96.17
Merged-chr3-36572154-3	chr3	36572048	36572248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027810)	TTS (NM_027810)	890.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	224.11	245.24	220.77	261.43	285.15	328.0	267.73	319.43	307.03	348.46	532.13	194.54
Merged-chr1-134747743-3	chr1	134747620	134747820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009307, exon 10 of 10)	3' UTR (NM_009307, exon 10 of 10)	38420.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	21.0	19.62	14.83	19.71	19.64	18.19	16.94	18.06	24.19	24.1	34.67	19.42
Merged-chr2-45231778-3	chr2	45231681	45231881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114339.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	84.39	69.42	58.19	37.0	74.46	153.02	49.49	38.52	78.68	69.79	103.01	34.77
Merged-chr4-15995693-3	chr4	15995591	15995791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145950)	TTS (NM_145950)	18147.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	18.57	6.79	25.67	13.27	12.68	22.58	21.26	22.43	26.95	25.11	29.14	15.35
Merged-chr6-83054591-3	chr6	83054487	83054687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-16.0	NM_019752	64704.0	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	186.55	208.01	181.98	189.84	221.32	240.2	152.47	211.32	233.67	198.83	254.76	129.07
Merged-chr1-172341095-3	chr1	172340967	172341167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039484)	promoter-TSS (NM_001039484)	-143.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	46.44	42.26	49.06	24.13	29.05	55.82	37.87	46.91	48.58	54.73	52.26	30.07
Merged-chrX-74246564-3	chrX	74246478	74246678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010227)	promoter-TSS (NM_010227)	-44.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	77.12	70.68	59.33	74.41	69.96	88.74	48.5	63.08	80.05	73.31	104.01	42.6
Merged-chr2-119029440-3	chr2	119029339	119029539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199310)	promoter-TSS (NM_199310)	-46.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	87.22	90.3	80.43	85.67	95.73	101.6	49.49	81.06	126.27	94.4	123.11	72.36
Merged-chr2-173018770-3	chr2	173018675	173018875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3127.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	29.07	26.66	17.68	30.16	33.55	36.69	30.23	47.86	36.19	39.16	52.76	15.66
Merged-chr19-9899582-3	chr19	9899487	9899687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016692)	promoter-TSS (NM_016692)	-54.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	155.06	169.03	164.29	196.68	157.91	174.66	127.22	114.14	141.03	123.02	150.24	79.26
Merged-chr3-146110587-3	chr3	146110498	146110698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-2562.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	98.53	85.52	94.7	94.52	117.82	127.0	54.14	89.86	128.04	111.47	70.35	68.29
Merged-chr15-25288046-3	chr15	25287945	25288145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125719.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	143.75	154.19	191.1	178.58	173.46	195.04	175.72	256.52	234.06	196.32	265.81	145.04
Merged-chr10-13300390-3	chr10	13300291	13300491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23898.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	46.03	47.79	47.35	58.72	73.64	85.92	56.47	67.46	73.36	67.78	114.06	47.93
Merged-chr5-99248717-3	chr5	99248606	99248806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	4221.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	64.2	84.51	67.31	80.44	63.82	66.48	67.43	78.98	69.04	80.84	137.18	57.33
Merged-chr11-20112440-3	chr11	20112335	20112535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	CpG	516.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	80.76	67.66	76.44	57.92	90.0	94.39	54.14	94.88	129.03	121.01	122.61	79.88
Merged-chr19-43631066-3	chr19	43630957	43631157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10950.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	25.44	20.37	29.66	21.72	30.27	27.91	22.92	26.75	25.37	45.69	39.7	28.51
Merged-chr10-81176865-5	chr10	81176773	81176973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007907, intron 1 of 13)	CpG	242.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	24.63	32.7	26.81	20.91	22.09	33.87	26.57	26.86	27.34	39.16	27.64	27.25
Merged-chr15-97581901-3	chr15	97581787	97581987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123935.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	50.47	60.62	58.76	41.43	107.59	113.2	52.15	74.22	104.83	112.97	116.07	47.62
Merged-chr15-9071173-3	chr15	9071071	9071271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-89.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	242.28	214.05	193.38	180.59	263.05	309.18	198.31	272.5	356.4	336.91	460.78	203.31
Merged-chr15-95804395-3	chr15	95804280	95804480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	13537.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	47.24	40.24	73.02	31.77	52.77	63.66	47.17	61.07	83.0	63.27	67.84	37.91
Merged-chr3-95457905-3	chr3	95457734	95457934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	23444.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	18.98	8.55	13.12	12.87	11.45	11.6	14.95	12.98	14.95	12.55	14.57	8.46
Merged-chr6-113660636-3	chr6	113660556	113660756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	22189.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	71.07	50.56	112.95	80.04	105.55	102.22	95.0	101.8	117.23	112.97	157.78	60.15
Merged-chr15-39944046-3	chr15	39943944	39944144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-50.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	117.5	139.09	107.25	79.64	126.41	121.04	99.98	104.24	139.45	115.48	214.06	75.81
Merged-chr8-34147159-3	chr8	34147028	34147228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-389.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	25.84	14.59	31.38	21.72	24.55	34.81	21.92	42.45	45.83	29.62	38.69	25.69
Merged-chr5-123749547-3	chr5	123749442	123749642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042421)	promoter-TSS (NM_001042421)	-128.0	NM_001359865	208606.0	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	117.1	99.61	74.16	89.29	119.46	156.79	76.07	84.39	163.45	160.17	123.61	94.29
Merged-chrX-20704580-3	chrX	20704482	20704682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145628, intron 1 of 20)	intron (NM_145628, intron 1 of 20)	673.0	NM_145628	236733.0	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	39.17	42.26	54.76	53.09	40.91	43.59	33.55	49.49	45.83	48.2	62.81	31.33
Merged-chr11-21225210-3	chr11	21225088	21225288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13844.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	68.24	78.48	80.43	85.67	102.68	81.84	74.41	83.83	99.92	103.94	107.53	66.41
Merged-chr18-84311919-3	chr18	84311840	84312040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	223782.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	36.34	32.95	29.66	51.08	29.05	39.51	38.2	61.85	45.43	32.13	70.85	26.31
Merged-chr3-58470236-3	chr3	58470148	58470348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55528.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	17.77	17.1	25.1	19.71	17.18	25.4	21.26	28.91	23.6	29.62	31.15	11.9
Merged-chr7-45717996-3	chr7	45717888	45718088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_203280)	promoter-TSS (NM_203280)	14.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	58.55	65.9	86.14	63.55	64.64	73.69	54.14	61.26	93.03	97.41	91.95	76.12
Merged-chr2-168154633-3	chr2	168154525	168154725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-112.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	31.09	33.96	41.07	22.52	40.91	49.23	34.21	32.33	28.32	24.1	46.23	14.41
Merged-chr5-16489985-1	chr5	16489885	16490085	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-63510.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	1.51	6.28	9.65	2.45	2.51	8.64	11.78	4.33	3.51	3.01	3.45
Merged-chr10-20058285-3	chr10	20058182	20058382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 9 of 29)	intron (NM_008580, intron 9 of 29)	-90638.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	17.36	17.36	31.38	19.71	32.32	24.46	19.27	37.26	26.95	40.67	32.66	13.78
Merged-chr10-9901147-3	chr10	9901030	9901230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081344)	promoter-TSS (NM_001081344)	-90.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	21.0	32.7	17.68	30.16	36.0	32.3	28.9	32.24	31.08	16.57	22.61	15.35
Merged-chr16-97593251-3	chr16	97593178	97593378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015775, intron 3 of 13)	B3|SINE|B2	17917.0	NM_015775	50528.0	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	23.82	20.37	20.54	27.35	30.27	42.02	16.61	30.11	41.11	28.62	56.28	30.39
Merged-chr10-80264879-3	chr10	80264802	80265002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122605)	promoter-TSS (NM_001122605)	-89.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	89.24	78.73	88.99	54.3	89.59	140.48	46.84	84.79	171.71	166.2	126.12	78.63
Merged-chr4-145200320-3	chr4	145200286	145200486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5381.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	23.42	30.18	21.11	29.36	25.36	31.04	35.54	37.93	37.37	23.6	43.72	26.94
Merged-chr9-108340045-3	chr9	108339980	108340180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001329528, exon 3 of 3)	exon (NM_001329528, exon 3 of 3)	1000.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	25.04	27.42	16.54	11.26	28.64	49.54	20.59	12.76	32.65	24.6	28.14	17.86
Merged-chr9-105131809-3	chr9	105131717	105131917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-12.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	67.43	57.6	64.46	61.94	73.64	84.35	49.83	75.25	126.86	129.04	188.93	75.18
Merged-chr2-125782791-3	chr2	125782694	125782894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	76.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	75.51	76.21	63.32	59.53	63.41	68.99	63.78	82.6	119.0	89.37	97.98	49.81
Merged-chr5-136244949-3	chr5	136244869	136245069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-29.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	51.28	45.78	53.05	43.84	50.32	72.75	42.19	47.05	101.1	108.96	103.01	62.34
Merged-chr11-86581474-3	chr11	86581329	86581529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2729.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	69.45	66.91	89.56	70.79	69.55	79.96	56.14	73.04	111.92	98.41	95.47	75.81
Merged-chr1-54798625-3	chr1	54798522	54798722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	127765.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	30.69	41.0	43.93	43.84	42.55	42.96	35.87	54.17	54.48	43.68	56.78	35.71
Merged-chr19-45176489-1	chr19	45176389	45176589	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25774.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	12.92	5.03	1.14	1.61	5.73	5.96	5.31	0.36	39.93	40.67	44.22	27.88
Merged-chr16-73769950-3	chr16	73769854	73770054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	572113.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	41.59	27.67	34.23	63.95	95.73	85.61	97.66	138.65	102.08	91.38	148.23	71.74
Merged-chr3-100488463-3	chr3	100488371	100488571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142952, intron 1 of 1)	CpG	721.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	33.52	18.86	16.54	29.36	33.14	21.32	23.58	39.08	31.27	22.59	37.69	22.56
Merged-chr18-74880180-3	chr18	74880066	74880266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	81097.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	14.13	16.35	30.8	26.55	33.55	22.26	23.92	38.58	46.03	40.67	58.79	27.57
Merged-chr1-88077325-2	chr1	88077220	88077420	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201644, intron 1 of 4)	RLTR17|LTR|ERVK	6541.0	NM_201644	394434.0	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	9.69	5.53	0.0	9.25	22.09	22.26	11.29	11.44	26.75	19.08	19.6	6.27
Merged-chr6-29540510-3	chr6	29540409	29540609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347079)	TTS (NM_001347079)	11227.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	33.11	29.43	57.62	62.34	38.86	42.96	36.54	47.64	34.03	33.14	72.36	30.7
Merged-chr16-38403827-3	chr16	38403736	38403936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	29309.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	30.28	27.67	46.78	32.58	69.14	84.04	38.86	56.22	43.86	38.16	54.27	33.52
Merged-chr11-121743792-3	chr11	121743698	121743898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41371.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	39.57	20.88	13.69	16.09	35.18	47.35	21.92	15.87	38.55	36.15	20.6	24.75
Merged-chr17-47511258-3	chr17	47511155	47511355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6204.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	133.25	118.97	112.95	126.69	121.91	169.96	96.33	105.17	153.81	155.15	134.67	82.39
Merged-chr1-53297077-3	chr1	53296967	53297167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153556)	promoter-TSS (NM_153556)	-28.0	NM_145517	227102.0	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	174.04	154.44	199.66	233.28	209.87	211.35	155.12	274.6	252.15	235.99	311.54	182.01
Merged-chr13-58115430-3	chr13	58115327	58115527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1780.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	47.24	23.14	22.82	43.04	67.09	39.51	36.21	53.58	63.33	58.24	79.89	42.92
Merged-chr3-14641636-3	chr3	14641554	14641754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024495)	promoter-TSS (NM_024495)	-73.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	170.81	160.22	154.02	105.38	169.37	257.44	135.86	152.72	189.8	224.94	213.05	73.3
Merged-chr10-128131499-3	chr10	128131368	128131568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38685.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	31.09	27.17	45.64	44.64	40.09	42.02	33.88	57.79	62.35	42.68	65.32	31.64
Merged-chr3-142394936-3	chr3	142394851	142395051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	745.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	107.81	120.98	93.55	104.57	122.73	160.24	95.33	114.51	146.34	159.17	179.39	89.91
Merged-chr11-32533205-3	chr11	32533090	32533290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-76.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	91.66	111.68	122.65	103.37	118.64	140.48	98.99	134.47	123.72	142.1	186.42	75.5
Merged-chr2-160621562-4	chr2	160621399	160621599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24398.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	23.82	14.34	23.39	16.09	22.5	16.93	33.55	35.44	16.33	32.64	34.17	26.0
Merged-chr17-45574330-3	chr17	45574250	45574450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1089.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	39.17	22.89	39.93	32.98	49.5	36.37	30.56	56.16	50.16	28.62	49.75	27.57
Merged-chr1-59914080-3	chr1	59913966	59914166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	1060.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	132.04	91.05	176.27	123.07	114.96	174.66	138.85	165.84	141.81	124.52	205.52	98.68
Merged-chr4-40844352-3	chr4	40844241	40844441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5797.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	79.55	80.24	81.0	50.27	57.27	113.83	61.78	51.14	104.44	95.9	105.52	47.93
Merged-chr15-100227773-3	chr15	100227684	100227884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-75.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	39.17	48.54	46.21	28.56	40.09	70.55	24.58	34.43	91.66	61.76	73.86	49.18
Merged-chr16-49855482-3	chr16	49855385	49855585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-169.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	132.04	167.01	131.78	172.54	129.69	128.25	187.01	141.7	154.4	173.23	229.13	87.4
Merged-chr13-64375886-3	chr13	64375796	64375996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5376.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	26.25	32.7	34.23	25.34	28.64	43.27	34.88	16.88	28.91	29.62	45.22	14.1
Merged-chr5-24530230-3	chr5	24530132	24530332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3384.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	35.13	28.17	41.07	31.37	30.27	49.23	15.94	26.66	41.5	66.28	63.31	36.34
Merged-chr9-95699406-3	chr9	95699294	95699494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR87|LTR|ERVL?	50964.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	73.49	58.35	21.68	28.96	43.36	84.04	26.24	44.92	80.64	76.32	88.94	31.95
Merged-chr8-47673631-3	chr8	47673533	47673733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	1526.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	87.62	92.81	88.42	114.22	107.19	116.34	140.18	91.74	126.47	167.7	132.66	83.96
Merged-chr19-10388854-3	chr19	10388817	10389017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173068)	promoter-TSS (NM_173068)	-173.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	16.96	37.73	19.4	28.96	21.27	36.06	14.62	16.57	18.29	23.1	27.13	15.98
Merged-chr14-61682998-1	chr14	61682898	61683098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-625.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	19.38	23.64	18.25	16.49	17.59	13.8	13.62	5.94	20.26	25.61	25.12	15.35
Merged-chr7-99052594-3	chr7	99052500	99052700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	L2a|LINE|L2	88544.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	81.16	63.39	63.89	72.4	80.59	83.72	53.15	90.31	96.38	81.34	117.08	67.98
Merged-chr14-55781416-3	chr14	55781262	55781462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080435, intron 4 of 25)	intron (NM_080435, intron 4 of 25)	2710.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	27.05	21.13	14.83	17.7	24.14	33.24	18.93	24.08	25.18	18.08	19.6	18.17
Merged-chr9-36797358-3	chr9	36797259	36797459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199494)	promoter-TSS (NM_001199494)	34.0	NM_001199494	13663.0	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	41.59	43.01	39.36	55.1	72.41	54.25	56.47	64.07	64.12	50.71	100.5	49.81
Merged-chr10-21976530-3	chr10	21976435	21976635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 3 of 13)	intron (NM_001161845, intron 3 of 13)	-2137.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	36.75	48.04	65.03	75.61	103.91	89.05	103.97	116.22	51.53	60.25	97.98	41.04
Merged-chr6-65528082-3	chr6	65527983	65528183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-62315.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	45.63	48.04	94.7	78.43	69.96	29.48	48.5	68.58	75.92	50.71	84.42	31.01
Merged-chr18-49500961-2	chr18	49500869	49501069	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22320.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	2.42	5.03	4.56	12.47	28.23	23.2	22.59	31.21	22.23	23.1	44.22	21.93
Merged-chr1-152625061-4	chr1	152624898	152625098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016846, exon 1 of 18)	exon (NM_016846, exon 1 of 18)	219.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	21.4	21.38	18.25	32.58	20.05	33.24	7.97	21.9	40.32	49.21	35.68	29.13
Merged-chr8-57488631-3	chr8	57488529	57488729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	666.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	41.99	30.43	39.36	28.56	47.46	59.58	30.89	43.09	60.38	46.19	57.79	32.89
Merged-chr13-50417890-3	chr13	50417792	50417992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	28.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	26.65	25.15	49.06	34.99	29.86	29.16	18.27	39.81	29.7	34.65	56.28	22.87
Merged-chr1-131090378-3	chr1	131090290	131090490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7453.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	18.57	20.88	51.91	18.1	50.73	54.88	24.25	48.59	46.03	49.71	80.4	27.57
Merged-chr3-65527809-1	chr3	65527709	65527909	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-638.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	25.84	34.96	38.22	25.34	46.64	37.0	30.23	44.97	47.01	56.24	66.33	51.38
Merged-chr8-94214504-3	chr8	94214404	94214604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	-60.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	76.72	72.69	86.14	67.97	80.59	87.49	63.78	78.34	111.13	104.94	108.54	63.91
Merged-chr15-66729116-3	chr15	66729007	66729207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 26 of 47)	intron (NM_009375, intron 26 of 47)	58337.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	36.34	37.73	36.51	47.46	22.91	43.27	38.86	45.81	46.81	28.62	35.17	28.82
Merged-chr7-104314906-1	chr7	104314806	104315006	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040749)	promoter-TSS (NR_040749)	-125.0	NR_040749	622070.0	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	-	predicted gene 15133	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	80.45	70.8	65.32	41.66
Merged-chr19-10605453-3	chr19	10605349	10605549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015735)	promoter-TSS (NM_015735)	-176.0	NM_015735	13194.0	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	105.39	89.8	102.11	75.21	93.68	131.39	75.07	98.05	100.51	117.99	109.54	70.8
Merged-chr7-35066837-3	chr7	35066736	35066936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10270.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	68.65	43.51	50.77	49.87	103.09	73.69	27.24	50.66	85.56	69.79	112.56	46.99
Merged-chr12-8500074-3	chr12	8499964	8500164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-55.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	348.07	325.23	366.8	407.03	330.96	411.72	316.56	422.08	413.24	429.3	623.58	306.69
Merged-chr4-152027720-3	chr4	152027605	152027805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133879)	promoter-TSS (NM_133879)	-34.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	161.11	138.09	172.28	160.08	184.1	220.44	137.52	214.37	227.57	227.45	279.38	131.89
Merged-chr2-75585144-3	chr2	75585059	75585259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74100.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	82.78	56.34	63.32	51.88	72.0	90.62	49.83	66.17	111.13	106.45	142.71	52.63
Merged-chrY-1010441-4	chrY	1010365	1010565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012011)	promoter-TSS (NM_012011)	-130.0	NM_001357094	26908.0	Mm.250909	NM_012011	ENSMUSG00000069049	Eif2s3y	Eif-2gy|Spy|Tfy	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	protein-coding	29.07	26.91	15.97	25.34	15.96	23.83	34.88	17.92	16.33	25.11	17.59	15.66
Merged-chr6-16892098-3	chr6	16892010	16892210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	6331.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	43.21	44.52	39.36	53.89	69.14	83.41	51.49	72.48	61.37	63.77	54.77	30.39
Merged-chr4-131855189-3	chr4	131855095	131855295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025297, intron 3 of 9)	intron (NM_025297, intron 3 of 9)	11724.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	78.74	74.96	65.6	48.26	67.09	118.53	64.11	36.14	93.43	77.32	86.93	37.91
Merged-chr3-98055958-3	chr3	98055848	98056048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	42410.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	35.94	29.68	53.62	39.82	38.05	30.73	41.85	51.56	40.32	24.1	33.67	14.72
Merged-chr8-125776996-3	chr8	125776915	125777115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	42812.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	24.23	25.66	35.37	42.63	69.14	64.28	81.05	90.48	77.3	52.22	129.64	57.95
Merged-chr19-32950422-3	chr19	32950300	32950500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	192823.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	49.67	47.04	36.51	46.25	72.41	51.43	48.5	64.21	67.86	52.72	72.36	27.57
Merged-chr19-5850005-3	chr19	5849904	5850104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026169)	TTS (NM_026169)	-4524.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	41.19	33.45	42.21	20.11	52.37	54.25	24.91	35.44	54.48	48.7	53.26	30.39
Merged-chr12-84773094-3	chr12	84772989	84773189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	23.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	295.58	287.75	301.77	283.95	306.42	404.2	259.76	281.44	378.43	373.57	491.43	215.21
Merged-chr5-16356049-3	chr5	16355955	16356155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110843, intron 29 of 38)	intron (NM_001110843, intron 29 of 38)	-197440.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	28.27	23.39	33.66	41.02	58.5	32.61	38.53	63.22	42.29	58.75	66.33	43.86
Merged-chr4-63553947-3	chr4	63553845	63554045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4818.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	67.43	56.59	100.4	48.67	83.87	105.05	104.3	117.62	109.36	82.85	120.6	64.53
Merged-chr10-54117972-3	chr10	54117877	54118077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42055.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	133.25	133.81	174.56	175.36	171.41	158.67	129.21	178.18	196.88	144.1	195.47	96.8
Merged-chr8-85060106-3	chr8	85060005	85060205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-14.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	26.25	27.42	29.09	28.96	31.91	28.54	10.63	26.92	21.64	30.13	26.63	22.24
Merged-chr14-21852391-1	chr14	21852291	21852491	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-3481.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	7.67	3.27	6.28	4.83	9.41	16.31	16.94	18.67	8.85	4.02	15.07	5.01
Merged-chr7-35735455-2	chr7	35735355	35735555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	18999.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	78.74	54.83	124.93	128.3	129.28	73.38	134.86	165.45	0.0	1.0	0.5	0.0
Merged-chr11-119354994-3	chr11	119354886	119355086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178743)	promoter-TSS (NM_178743)	524.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	27.46	18.11	18.25	27.35	40.09	27.59	25.24	28.54	26.55	21.09	23.11	29.45
Merged-chr7-38107645-3	chr7	38107541	38107741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-151.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	186.96	209.02	214.49	197.08	255.69	317.02	202.62	220.77	272.81	332.9	415.05	168.22
Merged-chr4-133584368-3	chr4	133584269	133584469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133884)	promoter-TSS (NM_133884)	-4.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	41.19	20.63	25.1	27.35	33.96	40.14	20.26	25.23	26.95	37.66	40.7	16.92
Merged-chr9-118599935-3	chr9	118599820	118600020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-6789.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	16.56	14.09	37.08	30.97	40.5	27.91	23.92	27.2	37.17	24.6	44.72	28.19
Merged-chr6-97205716-3	chr6	97205610	97205810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301857)	promoter-TSS (NM_001301857)	-63.0	NM_001301859	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	110.64	106.14	136.34	135.54	140.73	191.28	130.21	118.46	148.5	203.85	156.27	93.98
Merged-chr4-4793313-3	chr4	4793203	4793403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177730)	promoter-TSS (NM_177730)	3.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	77.93	77.47	87.85	76.02	78.96	109.12	103.97	78.93	92.25	97.41	130.65	55.76
Merged-chr4-154929563-3	chr4	154929451	154929651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1474.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	82.78	70.68	124.36	80.84	88.78	85.29	63.44	72.87	104.24	104.44	121.6	83.64
Merged-chr1-186749352-3	chr1	186749254	186749454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	4.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	61.78	57.35	54.19	69.98	64.23	82.16	37.54	100.54	95.79	93.89	133.66	49.18
Merged-chr7-104370312-3	chr7	104370205	104370405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11659.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	53.7	45.28	54.76	54.3	59.73	64.6	42.19	28.6	75.53	68.29	108.54	46.68
Merged-chr13-103921066-3	chr13	103920970	103921170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-484.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	32.71	32.45	25.67	21.72	33.14	28.22	31.22	31.79	35.8	20.08	35.17	15.04
Merged-chr14-66264916-3	chr14	66264920	66265120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	16032.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	20.59	31.69	42.78	35.39	32.32	40.76	20.26	23.78	41.11	51.21	56.78	31.95
Merged-chr9-78108599-3	chr9	78108492	78108692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	64.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	39.17	25.91	38.22	33.38	47.87	40.76	22.59	50.72	41.7	30.13	36.68	33.21
Merged-chr13-45265002-3	chr13	45264907	45265107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124735.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	15.34	7.55	32.52	34.19	45.82	20.7	39.53	52.57	14.95	20.08	31.66	26.31
Merged-chr10-117720057-3	chr10	117719968	117720168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9310.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	26.25	41.0	61.04	27.75	33.14	66.48	36.87	44.38	84.77	55.23	54.77	42.92
Merged-chr17-7897334-3	chr17	7897131	7897331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28769.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	22.21	22.89	32.52	24.94	32.73	34.49	21.26	28.18	52.32	41.67	45.22	28.51
Merged-chr7-97765399-3	chr7	97765329	97765529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23112.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	35.53	19.87	35.37	48.67	32.73	40.76	27.57	49.74	32.65	26.61	37.69	26.94
Merged-chr2-117852632-3	chr2	117852536	117852736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30708.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	30.28	24.4	63.89	48.26	39.68	50.17	29.9	47.07	56.84	34.65	104.52	28.51
Merged-chr10-95192132-3	chr10	95192026	95192226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-46301.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	41.19	41.0	59.33	52.29	80.18	54.56	44.51	54.56	77.5	61.76	64.82	49.18
Merged-chr4-21848241-5	chr4	21848116	21848316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028384, exon 1 of 1)	non-coding (NR_028384, exon 1 of 1)	232.0	NR_028384	67735.0	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	35.13	27.67	19.4	27.35	23.32	38.88	50.82	28.82	26.95	46.19	38.19	40.41
Merged-chr15-81466666-3	chr15	81466543	81466743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019712, intron 1 of 4)	CpG	327.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	30.69	37.98	37.08	30.97	48.68	53.62	29.9	50.16	79.27	68.79	93.96	53.88
Merged-chr5-5420177-3	chr5	5420081	5420281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-39930.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	67.84	90.55	98.12	136.75	87.55	115.08	140.51	106.18	90.08	141.59	158.78	66.41
Merged-chr4-11966579-3	chr4	11966476	11966676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	2.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	220.47	162.49	187.11	189.03	239.73	253.37	206.94	244.43	262.97	294.74	311.54	150.99
Merged-chr15-96594102-3	chr15	96594010	96594210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	47852.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	27.05	22.39	25.67	20.11	14.32	24.46	12.29	26.44	32.65	20.08	45.22	20.36
Merged-chr8-94012222-3	chr8	94012126	94012326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011787, exon 1 of 14)	exon (NM_011787, exon 1 of 14)	414.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	21.8	30.94	25.67	31.77	19.64	22.58	33.88	28.77	33.24	30.13	45.73	23.81
Merged-chr6-83795091-3	chr6	83794971	83795171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	14.0	NM_019542	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	121.54	116.71	114.09	109.0	101.05	167.13	84.04	116.89	147.12	151.64	161.3	112.78
Merged-chr6-86401262-3	chr6	86401160	86401360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2959.0	NM_001164079	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	18.98	21.88	16.54	17.7	29.86	16.31	18.93	22.29	31.47	29.12	45.22	15.66
Merged-chr13-35941150-3	chr13	35941050	35941250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26756.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	33.92	28.67	30.23	32.58	22.91	26.03	21.59	26.66	19.28	19.58	38.69	15.66
Merged-chr7-19628731-3	chr7	19628652	19628852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290457, intron 1 of 10)	intron (NM_001290457, intron 1 of 10)	686.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	294.37	279.45	260.7	267.06	336.28	422.7	296.96	286.91	412.85	493.57	491.93	250.3
Merged-chr10-57722566-3	chr10	57722478	57722678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-62345.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	23.82	23.14	34.8	34.19	43.36	41.71	31.89	51.5	58.61	40.67	64.82	38.53
Merged-chr3-127763270-3	chr3	127763183	127763383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17244.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	21.8	16.85	20.54	16.09	18.41	20.07	9.97	21.31	49.57	49.71	65.32	33.83
Merged-chr17-29394294-3	chr17	29394184	29394384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33370.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	75.11	87.53	70.17	46.25	53.59	94.39	27.9	25.65	81.04	107.45	64.32	40.41
Merged-chr7-89980525-3	chr7	89980425	89980625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021876, exon 1 of 12)	exon (NM_021876, exon 1 of 12)	451.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	134.87	138.34	130.63	106.18	108.82	156.16	93.01	109.49	134.93	124.02	155.27	76.12
Merged-chr5-122704712-3	chr5	122704593	122704793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2851.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	30.28	31.69	35.37	14.08	33.96	48.29	25.58	20.19	43.86	56.74	36.68	21.62
Merged-chr17-65763718-1	chr17	65763618	65763818	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	B2_Mm1a|SINE|B2	9034.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.4	0.0	0.0	0.33	0.48	48.39	30.63	69.34	29.13
Merged-chr13-5785657-3	chr13	5785547	5785747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR40a|LTR|ERVL	72445.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	38.76	36.47	37.65	54.7	86.32	98.46	40.19	67.15	93.82	88.37	75.37	37.28
Merged-chr9-96392123-3	chr9	96392039	96392239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27708.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	125.58	151.92	166.0	139.97	150.14	199.12	139.18	156.79	187.25	170.21	243.7	158.51
Merged-chr7-19715703-3	chr7	19715586	19715786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016871)	promoter-TSS (NM_016871)	-257.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	273.77	296.3	350.83	359.16	352.65	442.14	339.15	351.42	362.69	422.27	459.77	270.35
Merged-chr13-80962991-3	chr13	80962902	80963102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	65.82	45.78	59.33	81.65	96.96	83.41	132.2	124.04	116.24	102.43	180.39	88.34
Merged-chr8-70897516-3	chr8	70897414	70897614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-71.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	145.37	114.7	113.52	141.17	154.23	157.73	87.36	130.85	161.68	146.61	167.83	78.94
Merged-chr10-122774342-3	chr10	122774245	122774445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	95030.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	33.52	36.22	62.75	61.94	25.36	26.03	25.24	51.08	29.9	22.59	56.78	28.19
Merged-chr17-53479836-1	chr17	53479736	53479936	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025887, intron 1 of 5)	CpG	602.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	25.04	29.43	19.4	30.57	22.09	44.53	41.19	33.2	34.42	44.69	43.72	39.78
Merged-chr9-121704917-3	chr9	121704789	121704989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178677, intron 1 of 7)	CpG	140.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	67.43	80.74	77.01	82.05	85.09	111.63	96.66	63.45	75.92	84.35	101.0	77.69
Merged-chr7-19496392-3	chr7	19496304	19496504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11927.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	40.38	28.93	51.34	32.98	52.77	51.74	55.47	61.99	49.37	40.67	45.22	28.19
Merged-chr19-6046973-3	chr19	6046878	6047078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164709)	promoter-TSS (NM_001164709)	-167.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	56.53	38.99	23.96	32.98	38.46	49.54	23.92	29.61	46.42	42.18	36.18	29.76
Merged-chr1-164135491-3	chr1	164135396	164135596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-16339.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	27.05	16.6	21.11	22.12	36.0	37.0	59.46	67.09	53.89	47.2	45.22	27.25
Merged-chr9-7572809-3	chr9	7572704	7572904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310717, intron 2 of 9)	B3|SINE|B2	1408.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	86.01	80.49	115.8	76.02	106.37	90.31	63.78	96.67	136.5	106.95	109.04	60.46
Merged-chr10-128374591-1	chr10	128374491	128374691	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2533.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	6.86	6.29	2.28	6.03	5.32	5.96	5.65	4.4	17.31	21.59	23.62	6.58
Merged-chr2-167015305-3	chr2	167015214	167015414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	1.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	41.19	35.72	24.53	13.67	50.73	44.84	15.61	35.89	38.55	54.23	23.11	23.18
Merged-chr7-64011965-3	chr7	64011866	64012066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73051.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	33.11	30.18	59.9	52.29	92.05	92.82	80.72	106.23	81.04	81.84	76.38	65.16
Merged-chr2-125673095-3	chr2	125673019	125673219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025613)	promoter-TSS (NM_025613)	19.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	52.9	24.9	40.5	36.6	51.55	48.6	28.9	47.41	35.8	37.16	39.7	28.51
Merged-chr2-30286405-3	chr2	30286293	30286493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177648)	promoter-TSS (NM_177648)	-39.0	NM_177648	227697.0	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	62.59	38.48	46.21	28.15	78.14	55.19	27.9	47.83	87.92	90.88	81.9	53.88
Merged-chr11-75178864-3	chr11	75178735	75178935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027136)	promoter-TSS (NM_027136)	-27.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	48.05	30.43	34.8	14.88	51.96	53.62	23.92	31.04	41.5	45.69	52.26	25.06
Merged-chr5-92506319-3	chr5	92506211	92506411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	-654.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	26.25	18.11	17.68	18.5	49.91	32.61	21.59	28.09	36.58	21.59	38.69	28.19
Merged-chr17-55952622-3	chr17	55952517	55952717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015766)	promoter-TSS (NM_015766)	-6.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	76.32	75.71	86.14	43.04	92.87	118.22	55.47	52.26	113.1	111.97	125.12	62.34
Merged-chr15-81663894-3	chr15	81663780	81663980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110362)	promoter-TSS (NR_110362)	-9.0	NM_001289712	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	42.4	49.05	71.31	51.48	58.91	85.29	30.23	52.32	92.64	90.38	104.52	49.5
Merged-chr10-95817587-3	chr10	95817483	95817683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-123080.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	42.4	29.68	67.31	47.46	45.0	43.59	47.5	81.11	36.58	41.17	60.3	41.98
Merged-chr9-65551190-3	chr9	65551103	65551303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28884.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	81.57	76.21	106.68	73.2	77.73	124.17	83.04	66.76	75.53	88.87	136.68	50.75
Merged-chr3-142619828-3	chr3	142619733	142619933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-830.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	56.94	40.75	29.09	22.93	33.14	51.11	21.59	20.16	42.88	49.21	51.76	20.05
Merged-chr4-136894849-3	chr4	136894722	136894922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1908.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	32.71	34.71	22.25	42.63	66.27	43.59	31.89	43.99	18.69	19.08	24.12	19.11
Merged-chr7-44895943-5	chr7	44895833	44896033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-146.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	36.34	24.4	21.11	33.78	31.09	41.71	43.85	27.36	47.6	66.28	42.21	49.81
Merged-chr1-172550722-3	chr1	172550618	172550818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040558)	promoter-TSS (NR_040558)	88.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	35.94	37.48	51.91	65.96	21.68	26.97	28.9	39.79	41.11	30.63	69.34	29.13
Merged-chr7-46717172-3	chr7	46717064	46717264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1488.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	22.21	22.39	36.51	29.76	14.73	28.85	23.58	23.27	18.29	22.59	30.65	16.29
Merged-chr11-3157665-2	chr11	3157550	3157750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 11 of 32)	intron (NM_030207, intron 11 of 32)	33629.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	168.38	126.52	177.41	164.1	386.6	357.16	245.81	461.97	0.0	0.0	1.0	2.51
Merged-chr2-101783445-3	chr2	101783348	101783548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14259.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	35.53	42.01	55.9	65.16	54.0	83.41	69.76	60.17	105.62	104.94	120.6	76.12
Merged-chr8-94443428-3	chr8	94443331	94443531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8328.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	40.38	48.8	36.51	32.58	30.27	27.91	14.95	17.44	53.3	43.68	48.24	23.49
Merged-chr3-83841164-2	chr3	83841049	83841249	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011905, intron 1 of 2)	intron (NM_011905, intron 1 of 2)	459.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	23.02	19.37	10.84	14.48	7.77	32.3	28.57	15.34	14.95	25.11	29.14	24.43
Merged-chrX-7204311-3	chrX	7204202	7204402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 3 of 13)	MTC|LTR|ERVL-MaLR	-15588.0	NM_016691	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	21.8	23.39	42.78	40.22	29.86	15.99	21.59	33.53	30.49	30.13	29.65	13.78
Merged-chr13-67173191-3	chr13	67173106	67173306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	24.0	NM_001013769	380855.0	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	59.36	49.55	34.8	39.82	52.37	52.37	52.15	38.64	104.64	85.36	142.2	52.32
Merged-chr2-172393624-3	chr2	172393536	172393736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276423)	promoter-TSS (NM_001276423)	-158.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	51.69	34.96	47.35	61.13	73.23	98.78	66.43	95.72	95.2	102.43	99.49	52.94
Merged-chr15-96641627-3	chr15	96641524	96641724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134086, exon 1 of 16)	5' UTR (NM_134086, exon 1 of 16)	338.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	55.32	36.97	26.81	49.07	45.0	75.26	43.18	56.78	79.66	86.86	92.96	48.56
Merged-chr16-94313450-3	chr16	94313338	94313538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139145, intron 1 of 10)	CpG	125.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	113.06	114.7	92.41	132.73	121.5	142.36	141.5	110.58	118.8	170.21	159.79	103.38
Merged-chr10-40302262-3	chr10	40302157	40302357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-69.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	133.25	131.3	159.16	124.28	176.73	148.63	97.99	142.79	177.61	167.2	228.63	94.61
Merged-chr1-172566435-1	chr1	172566335	172566535	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	6529.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.81	1.01	1.14	0.0	0.82	3.76	0.66	0.0	67.66	105.44	55.27	19.42
Merged-chr2-102968498-3	chr2	102968402	102968602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66837.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	121.95	104.64	131.78	104.57	130.91	182.19	112.94	151.65	114.47	134.06	152.25	67.35
Merged-chr17-44664087-2	chr17	44663982	44664182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	72094.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	7.27	12.32	14.83	26.55	7.77	4.7	8.64	20.83	2.95	2.01	2.51	5.64
Merged-chr8-88298161-3	chr8	88298069	88298269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	3965.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	41.59	29.18	37.08	37.4	29.86	38.26	38.86	50.24	33.44	34.14	51.76	28.82
Merged-chr6-113308515-3	chr6	113308418	113308618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	1381.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	38.76	28.93	41.07	23.33	43.36	60.21	43.85	45.48	63.33	72.3	66.83	34.15
Merged-chr8-3516756-3	chr8	3516567	3516767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	-196.0	NM_001359124	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	16.56	21.88	21.11	34.99	27.41	34.18	32.22	31.6	21.05	20.59	23.11	30.07
Merged-chr8-22166365-3	chr8	22166299	22166499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	36.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	111.45	152.93	107.25	177.37	117.82	163.37	183.03	136.49	144.17	160.17	206.52	109.02
Merged-chr2-34977366-3	chr2	34977268	34977468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15596.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	49.67	44.27	45.64	41.43	51.55	111.63	36.87	52.91	62.94	66.28	53.26	31.64
Merged-chr4-57955663-3	chr4	57955568	57955768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	CpG	743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	27.86	38.48	18.83	29.76	30.68	53.62	33.22	35.36	47.4	62.76	64.32	26.63
Merged-chr1-163779589-3	chr1	163779490	163779690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	7.0	NM_010629	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	313.35	259.07	315.46	367.61	310.92	400.43	285.0	466.29	397.51	416.75	625.59	301.99
Merged-chrM-11333-2	chrM	11225	11425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											41272.76	34918.62	44399.21	47330.46	38021.26	44257.98	49357.61	60340.7	0.0	0.0	0.0	0.0
Merged-chr11-11573866-3	chr11	11573767	11573967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53971.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	25.04	12.83	24.53	8.45	32.73	35.43	16.28	41.55	30.88	26.11	71.35	29.45
Merged-chr2-178506234-3	chr2	178506121	178506321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75706.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	33.52	29.43	32.52	36.6	26.59	47.98	66.43	61.68	24.0	17.07	39.7	20.68
Merged-chr2-150842296-3	chr2	150842131	150842331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	339.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	27.86	23.9	15.4	29.76	24.96	17.87	34.88	45.06	19.08	24.6	24.12	13.47
Merged-chr13-32338730-3	chr13	32338629	32338829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-185.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	223.7	242.47	263.55	255.8	259.37	312.63	263.41	288.17	312.93	342.94	465.3	227.74
Merged-chr17-32965786-3	chr17	32965639	32965839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	-23.0	NR_033585	77875.0	Mm.245027	NR_033585		Cyp4f41-ps	6030422M01Rik	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene	pseudo	30.69	23.64	29.66	26.95	35.59	33.24	22.59	36.87	50.55	32.64	39.7	30.07
Merged-chr5-32133729-3	chr5	32133617	32133817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2755.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	17.77	7.55	35.37	22.52	44.59	20.7	30.23	26.61	46.03	40.17	67.33	34.15
Merged-chr8-122281969-3	chr8	122281865	122282065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-176.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	203.51	263.85	259.56	257.81	284.33	330.19	185.02	218.72	316.67	339.42	387.41	188.59
Merged-chr4-59331890-3	chr4	59331772	59331972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	71821.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	84.8	82.5	92.98	104.97	96.96	119.16	81.71	124.74	90.67	91.89	92.96	55.76
Merged-chr7-16399638-2	chr7	16399542	16399742	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1554.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	23.82	33.45	15.97	43.04	34.77	50.17	44.51	29.27	40.32	34.14	76.88	41.35
Merged-chr15-53141195-3	chr15	53141103	53141303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	204980.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	25.84	25.4	25.67	27.35	33.55	42.65	29.9	14.78	39.53	39.67	33.16	16.6
Merged-chr10-21992569-3	chr10	21992482	21992682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161849, intron 1 of 11)	intron (NM_001161849, intron 1 of 11)	359.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	35.53	37.73	27.95	42.23	43.77	47.35	26.91	31.09	44.06	45.69	55.78	22.56
Merged-chr5-136986917-3	chr5	136986823	136987023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	-19.0	NM_001310748	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	55.72	57.6	59.9	47.06	68.32	74.63	26.91	45.79	75.33	63.77	91.45	44.8
Merged-chr7-143549130-4	chr7	143549008	143549208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008672)	promoter-TSS (NM_008672)	12.0	NM_001285489	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	142.54	141.86	183.12	155.25	168.55	197.86	146.49	160.29	213.41	252.56	258.78	148.18
Merged-chr4-59225105-1	chr4	59225005	59225205	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34946.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	2.42	3.27	2.85	4.42	1.64	1.25	9.63	10.21	7.28	3.01	4.52	5.64
Merged-chr11-97041509-3	chr11	97041419	97041619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	-41.0	NM_001357807	107732.0	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	46.84	52.32	20.54	30.57	51.55	64.91	28.23	31.77	72.38	59.75	37.18	38.85
Merged-chr3-37729348-3	chr3	37729263	37729463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5003.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	75.11	45.53	109.53	102.96	58.09	26.34	55.47	95.02	43.86	42.18	85.92	36.65
Merged-chr9-108783747-3	chr9	108783645	108783845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12249.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	106.2	75.46	115.8	79.23	103.09	93.13	70.75	99.0	94.61	86.86	122.61	64.53
Merged-chr19-29522215-3	chr19	29522119	29522319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	-63.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	86.41	82.5	64.46	71.59	114.55	125.74	74.41	120.2	149.68	129.04	171.85	72.05
Merged-chr8-120489445-3	chr8	120489297	120489497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	CpG-14576	531.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	34.32	44.52	32.52	32.18	27.82	30.1	36.87	27.42	33.24	32.64	32.16	18.17
Merged-chr2-84524195-3	chr2	84524093	84524293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17320.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	62.99	67.41	60.47	82.85	77.73	77.45	61.12	79.91	100.31	84.86	114.57	59.21
Merged-chr6-5509967-3	chr6	5509881	5510081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13703.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	117.1	95.08	164.86	170.13	198.82	192.53	218.24	279.53	155.19	140.59	207.53	111.21
Merged-chr7-143628086-3	chr7	143627967	143628167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	-3.0	NR_153818	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	55.32	46.53	60.47	46.66	30.68	36.06	46.5	57.34	58.61	28.62	49.24	39.78
Merged-chr17-35174664-3	chr17	35174553	35174753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019467, intron 1 of 7)	MER21C|LTR|ERVL	1399.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	58.95	48.29	69.6	30.97	38.46	73.06	25.91	27.14	67.07	62.76	58.29	26.63
Merged-chr4-119415562-3	chr4	119415457	119415657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001270435)	promoter-TSS (NM_001270435)	-36.0	NM_029286	73332.0	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	35.53	21.38	34.23	36.2	20.86	45.15	17.94	51.76	52.71	37.66	84.92	45.42
Merged-chr15-51735283-1	chr15	51735183	51735383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	130178.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	22.21	14.09	21.11	20.11	3.27	0.31	1.66	2.94	6.69	1.51	6.03	4.39
Merged-chr4-126819475-3	chr4	126819385	126819585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	65715.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	17.36	17.1	32.52	29.36	14.73	30.1	22.92	21.39	24.59	29.12	26.63	27.25
Merged-chr12-83928061-3	chr12	83927960	83928160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6126.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	41.19	32.95	53.05	27.35	30.27	51.11	31.89	27.7	51.93	45.19	58.29	26.31
Merged-chr15-30608252-3	chr15	30608130	30608330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-430896.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	47.24	42.51	47.35	88.48	46.64	40.14	61.78	73.74	95.79	108.96	126.63	70.17
Merged-chr1-151285299-3	chr1	151285196	151285396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59190.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	44.01	32.2	40.5	32.98	29.46	58.95	31.89	39.36	42.68	32.64	44.22	21.3
Merged-chr9-83682143-1	chr9	83682043	83682243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9332.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.0	1.01	6.85	11.26	6.14	3.76	9.63	13.71	7.47	6.03	16.08	4.39
Merged-chr11-115708674-3	chr11	115708574	115708774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-77.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	136.89	124.76	92.41	106.18	96.96	151.46	92.34	96.84	167.97	160.67	189.44	98.05
Merged-chr18-39489950-3	chr18	39489851	39490051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2706.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	93.68	89.54	99.83	86.88	105.14	132.33	67.1	78.87	139.65	108.45	159.29	52.94
Merged-chr9-106222530-3	chr9	106222431	106222631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-67.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	71.47	54.58	75.3	40.22	74.87	66.48	29.23	66.48	84.58	86.36	58.79	48.24
Merged-chr3-88422551-3	chr3	88422446	88422646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2595.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	39.57	38.74	39.36	28.56	37.64	58.95	25.58	26.07	77.69	71.3	80.9	24.75
Merged-chr1-39916315-3	chr1	39916220	39916420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	ORR1B2-int|LTR|ERVL-MaLR	15407.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	48.86	30.69	76.44	56.31	45.0	23.52	49.49	69.5	57.83	38.66	81.9	43.54
Merged-chr2-91412502-3	chr2	91412389	91412589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 2 of 8)	intron (NM_175123, intron 2 of 8)	32225.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	81.57	91.3	119.8	106.18	113.73	145.5	83.37	120.65	133.16	96.91	131.65	79.88
Merged-chr2-30178509-3	chr2	30178412	30178612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-53.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	105.79	91.05	72.45	70.79	114.14	133.27	58.13	69.53	108.18	102.93	132.15	65.47
Merged-chr5-105731705-3	chr5	105731535	105731735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30825.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	20.19	17.1	23.96	21.72	21.68	26.34	15.94	18.2	36.58	37.66	34.17	23.49
Merged-chr19-34234115-3	chr19	34234011	34234211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360716, exon 6 of 11)	exon (NM_001360716, exon 6 of 11)	1486.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	26.25	23.14	41.64	27.35	18.41	17.25	19.93	42.39	33.83	18.08	42.21	19.74
Merged-chr15-64306324-2	chr15	64306233	64306433	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	6340.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	1.62	3.77	0.0	0.8	14.32	23.52	22.92	31.07	30.29	28.62	54.27	25.37
Merged-chr19-28011632-3	chr19	28011538	28011738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011265)	promoter-TSS (NM_011265)	-472.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	77.12	60.87	50.77	55.91	75.28	84.98	67.76	68.52	80.84	46.19	82.91	34.15
Merged-chr14-63178054-3	chr14	63177960	63178160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360211)	promoter-TSS (NM_001360211)	-173.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	207.95	200.72	252.14	191.45	229.1	297.27	176.38	219.84	225.8	284.69	286.92	169.79
Merged-chr8-72548402-3	chr8	72548299	72548499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-89.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	209.97	180.6	218.48	207.13	213.96	255.25	183.03	227.08	217.34	243.02	274.36	177.31
Merged-chr7-132804187-3	chr7	132804087	132804287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9009.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	50.88	41.0	48.49	77.62	68.32	75.88	56.8	86.27	68.25	57.24	106.02	38.85
Merged-chr1-34464785-3	chr1	34464683	34464883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	L1MB8|LINE|L1	5037.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	45.23	32.45	47.92	43.84	46.64	47.66	44.18	55.68	58.02	77.83	66.33	46.99
Merged-chr4-45799056-3	chr4	45798957	45799157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028270)	promoter-TSS (NM_028270)	35.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	24.23	29.43	26.24	37.0	26.59	32.3	23.92	27.25	40.52	36.65	61.3	21.3
Merged-chrX-164980483-3	chrX	164980362	164980562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290524)	promoter-TSS (NM_001290524)	-87.0	NM_001290524	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	189.38	167.01	148.89	185.01	195.55	186.26	177.71	201.11	232.68	218.42	254.26	144.1
Merged-chrUn_JH584304-2690-1	chrUn_JH584304	2590	2790	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	56999.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	53.11	68.79	49.24	37.28
Merged-chr16-15956607-3	chr16	15956522	15956722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	69336.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	49.67	55.08	70.17	85.67	43.36	54.56	46.5	61.85	52.12	30.13	62.81	37.91
Merged-chr14-27376271-3	chr14	27376178	27376378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	14889.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	67.84	55.08	36.51	36.2	57.27	75.88	44.51	43.54	71.99	62.26	69.85	44.48
Merged-chr18-36713567-3	chr18	36713457	36713657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13258.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	70.26	41.5	37.65	44.64	115.78	113.51	77.06	90.59	60.38	46.7	65.32	40.72
Merged-chr12-119157904-3	chr12	119157810	119158010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80366.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	41.59	39.74	50.2	39.42	64.23	72.12	54.81	59.69	91.85	89.37	134.16	56.39
Merged-chr4-97773364-3	chr4	97773255	97773455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4271.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	119.93	110.67	104.96	109.8	122.32	103.48	99.65	120.25	147.91	150.13	142.2	82.7
Merged-chr14-32084949-3	chr14	32084853	32085053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145460)	promoter-TSS (NM_145460)	333.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	46.44	24.65	45.64	39.82	46.23	58.95	40.52	62.52	49.17	51.21	70.85	27.57
Merged-chr6-16883713-3	chr6	16883612	16883812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	14729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	32.71	28.67	21.11	26.14	47.46	63.66	35.54	39.2	42.48	54.23	44.22	22.24
Merged-chr3-88425214-3	chr3	88425107	88425307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178696)	promoter-TSS (NM_178696)	-66.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	99.33	114.95	142.61	115.83	134.19	177.17	101.31	127.71	148.11	157.66	188.93	86.15
Merged-chr9-123260802-3	chr9	123260684	123260884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002267)	promoter-TSS (NM_001002267)	5.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	17.77	13.08	5.7	20.11	22.91	17.25	12.95	17.13	9.44	5.52	4.02	15.04
Merged-chr15-38660245-3	chr15	38660130	38660330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	45.23	32.45	53.62	69.18	57.27	31.36	53.15	72.25	47.4	34.65	71.35	28.82
Merged-chr18-60560779-3	chr18	60560709	60560909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025776)	promoter-TSS (NM_025776)	23.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	31.9	45.53	34.8	54.3	30.68	26.97	49.49	35.44	42.29	48.2	44.72	36.97
Merged-chr9-85340480-3	chr9	85340366	85340566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13316.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	24.23	23.9	34.23	28.96	44.18	32.93	38.53	60.45	29.11	21.09	44.72	27.25
Merged-chr1-172335956-3	chr1	172335866	172336066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5244.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	53.7	53.83	51.34	59.12	65.87	90.94	63.78	53.22	52.52	47.2	46.23	23.81
Merged-chr8-120790869-3	chr8	120790765	120790965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52226.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	29.48	18.36	36.51	37.0	34.77	32.3	41.19	68.97	30.49	11.55	39.19	22.87
Merged-chr4-156236049-3	chr4	156235951	156236151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	41.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	69.05	63.89	62.18	69.98	65.87	72.44	68.1	70.96	90.67	83.85	102.51	56.7
Merged-chr14-122013784-3	chr14	122013688	122013888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20886.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	48.86	23.14	34.8	37.81	47.05	56.44	30.89	60.7	30.29	45.69	50.25	20.68
Merged-chr6-38941210-3	chr6	38941099	38941299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	22213.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	63.8	65.9	130.06	107.39	94.91	79.02	98.65	130.74	78.68	78.33	129.14	69.86
Merged-chr15-101247036-1	chr15	101246936	101247136	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19810.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.65	12.32	3.42	4.42	10.64	13.48	6.98	16.29	33.24	15.57	42.21	25.06
Merged-chr5-118245115-3	chr5	118245009	118245209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-84.0	NM_001109902	269695.0	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	205.13	206.25	199.09	200.3	266.33	268.42	184.02	218.58	291.49	298.75	376.86	191.41
Merged-chrX-99695569-3	chrX	99695472	99695672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125497.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	33.52	21.63	66.74	78.43	51.14	53.62	53.81	77.33	46.81	42.68	72.86	22.56
Merged-chr4-133170291-3	chr4	133170210	133170410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25345.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	58.15	46.78	85.0	76.42	46.23	74.63	46.5	55.01	78.09	70.29	76.88	57.01
Merged-chr11-111066072-3	chr11	111065991	111066191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-73.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	92.07	79.48	104.39	76.42	89.18	83.72	37.54	70.71	132.76	95.9	102.51	56.07
Merged-chr7-109986379-3	chr7	109986249	109986449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-119.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	176.86	136.58	154.02	142.38	173.46	172.47	124.9	128.83	207.9	222.93	219.58	106.51
Merged-chr12-113014313-3	chr12	113014231	113014431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	-177.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	79.55	63.13	66.17	59.93	99.82	122.92	78.06	87.17	132.17	99.42	169.84	71.42
Merged-chr10-36974494-4	chr10	36974394	36974594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-50.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	69.86	59.86	85.57	61.94	81.82	68.67	66.43	80.78	87.13	111.47	122.61	78.63
Merged-chr2-5379333-3	chr2	5379233	5379433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030601)	promoter-TSS (NR_030601)	-57.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	167.17	187.89	146.61	129.51	41.73	48.6	46.5	17.86	47.8	43.68	64.82	87.4
Merged-chr2-114200337-3	chr2	114200225	114200425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	1107.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	31.09	47.79	29.09	50.68	38.46	39.82	39.2	31.29	37.76	51.21	63.31	24.75
Merged-chr14-25842145-3	chr14	25842067	25842267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	12.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	44.01	24.65	34.23	23.33	22.91	56.13	36.54	36.25	46.22	32.64	39.7	28.51
Merged-chr3-87910827-3	chr3	87910736	87910936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3986.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	26.65	24.15	31.95	30.16	40.09	43.59	23.25	38.19	52.32	47.2	86.93	36.34
Merged-chr4-102588855-3	chr4	102588739	102588939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	-1004.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	29.07	17.61	37.08	29.36	22.5	35.12	27.9	27.98	37.17	22.09	41.71	15.04
Merged-chr11-54787034-3	chr11	54786956	54787156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	CpG	647.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	32.3	23.9	22.25	23.33	22.5	32.61	18.6	13.74	28.52	29.12	20.1	13.47
Merged-chr10-34418544-3	chr10	34418442	34418642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347463)	promoter-TSS (NM_001347463)	9.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	150.62	124.25	143.76	186.22	170.19	172.15	140.84	195.51	196.29	154.65	204.01	132.51
Merged-chr7-128461826-3	chr7	128461716	128461916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-143.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	207.55	254.55	305.76	228.85	251.6	351.52	239.83	266.22	316.27	273.65	385.91	201.12
Merged-chr14-9389435-3	chr14	9389334	9389534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-494661.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	51.28	39.99	38.22	50.27	51.96	58.64	62.78	79.18	69.82	46.19	71.86	56.07
Merged-chr11-115189517-3	chr11	115189418	115189618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	2031.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	154.65	176.57	179.69	156.46	205.78	239.88	173.73	200.3	197.67	211.39	221.59	127.81
Merged-chr13-41249784-3	chr13	41249722	41249922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135577)	promoter-TSS (NM_001135577)	-22.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	84.39	69.17	91.84	106.58	99.0	105.67	68.76	86.97	107.39	127.53	175.87	91.16
Merged-chr16-20302391-3	chr16	20302276	20302476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005767)	promoter-TSS (NM_001005767)	-14.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	48.86	53.07	65.03	61.94	63.0	83.72	37.54	59.66	69.82	42.68	49.24	50.75
Merged-chr7-125552230-3	chr7	125552134	125552334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-48.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	128.41	102.87	112.38	79.64	79.37	90.94	56.47	66.0	120.77	115.48	144.71	66.1
Merged-chr8-120763436-3	chr8	120763310	120763510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	24771.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	18.57	13.83	22.82	18.5	21.27	15.99	16.61	18.5	24.0	16.57	34.67	21.62
Merged-chr8-106153139-3	chr8	106153048	106153248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	2794.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	80.36	53.58	78.72	41.43	103.09	123.55	58.46	90.06	122.54	81.34	129.64	51.38
Merged-chr10-84438218-3	chr10	84438114	84438314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2257.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	34.73	38.74	37.08	41.83	22.91	23.52	15.61	29.3	30.88	30.13	34.17	23.49
Merged-chr4-152138685-3	chr4	152138584	152138784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207687, intron 4 of 15)	CpG	-2359.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	140.12	96.59	116.94	113.02	138.69	134.52	94.0	121.12	159.71	161.68	198.98	135.33
Merged-chr8-88668772-3	chr8	88668679	88668879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	21432.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	132.04	132.3	189.96	222.01	159.55	128.25	119.91	152.41	182.72	150.13	240.69	120.61
Merged-chr17-45758133-3	chr17	45758024	45758224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	URR1A|DNA|hAT-Charlie	23618.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	126.79	105.14	198.52	119.45	164.87	180.62	169.07	141.22	150.07	159.17	207.53	106.51
Merged-chr13-45001591-3	chr13	45001458	45001658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	538.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	28.67	54.08	43.93	32.58	51.96	64.6	49.16	49.43	43.27	39.67	31.66	31.95
Merged-chr10-81137443-3	chr10	81137347	81137547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	CpG	1176.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	274.98	279.7	256.14	246.95	285.15	334.27	221.89	252.56	315.88	370.55	373.34	208.01
Merged-chr5-130002999-3	chr5	130002905	130003105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	44.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	178.07	180.35	223.62	198.69	178.78	237.06	140.84	231.03	192.95	189.29	259.28	134.08
Merged-chr12-5277139-3	chr12	5277026	5277226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98556.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	25.84	22.13	30.8	43.04	33.55	30.1	33.22	43.71	47.21	38.66	55.27	29.45
Merged-chr7-67631037-1	chr7	67630937	67631137	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028143, intron 2 of 9)	intron (NR_028143, intron 2 of 9)	14199.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	13.33	5.03	0.57	8.85	6.95	8.78	6.64	4.32	15.14	6.03	15.07	4.7
Merged-chr11-115933603-3	chr11	115933509	115933709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020483)	promoter-TSS (NM_020483)	-50.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	86.82	61.37	74.16	39.42	76.09	104.11	39.2	53.05	119.19	100.42	77.88	49.81
Merged-chr6-48818019-3	chr6	48817915	48818115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22973.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	45.23	34.96	43.93	32.98	30.68	36.37	35.87	48.81	37.96	39.67	68.34	31.01
Merged-chr2-170317003-3	chr2	170316896	170317096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39365.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	47.24	38.23	43.93	51.48	54.82	57.7	45.51	70.63	63.73	63.27	70.35	48.56
Merged-chr8-94187527-3	chr8	94187422	94187622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8433.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	20.59	11.82	19.4	20.91	34.77	27.28	27.9	34.46	46.42	19.58	52.26	27.57
Merged-chr5-137080011-3	chr5	137079902	137080102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7730.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	51.28	39.99	63.32	61.13	87.55	93.76	77.4	89.36	93.82	100.42	137.18	56.39
Merged-chr6-128438693-3	chr6	128438602	128438802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	-46.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	106.2	96.34	110.1	92.91	134.19	107.24	90.68	150.08	151.25	130.55	221.09	89.28
Merged-chr5-8944076-3	chr5	8943967	8944167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008830, intron 21 of 27)	MIR|SINE|MIR	50346.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	29.07	35.47	49.06	55.5	27.82	38.57	32.55	53.07	63.73	38.66	68.84	33.21
Merged-chr12-111377767-3	chr12	111377679	111377879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-61.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	97.31	129.03	104.96	112.21	129.28	155.85	121.57	96.2	162.66	163.69	179.89	89.91
Merged-chr7-4741277-3	chr7	4741190	4741390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358044, intron 1 of 8)	intron (NM_001358044, intron 1 of 8)	1163.0	NM_001358044	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	27.86	13.83	18.83	17.7	37.23	21.95	15.94	20.66	20.46	26.11	36.68	12.53
Merged-chr17-39846142-2	chr17	39846055	39846255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	3158.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	689.28	1002.84	723.91	664.03	247.92	338.66	200.3	162.22	230.91	317.83	304.0	394.09
Merged-chr15-76710564-3	chr15	76710454	76710654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145471)	promoter-TSS (NM_145471)	5.0	NM_058214	79456.0	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	87.62	71.43	79.29	57.11	65.46	86.55	39.86	69.48	67.66	84.35	85.42	41.98
Merged-chr9-119365431-3	chr9	119365328	119365528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359699, intron 3 of 17)	B3A|SINE|B2	8047.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	18.57	13.33	25.1	23.73	17.18	21.01	15.28	24.79	28.13	20.08	40.2	11.9
Merged-chr14-54603489-3	chr14	54603388	54603588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028890, intron 1 of 6)	CpG	2420.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	59.76	68.92	61.61	69.18	83.46	112.26	62.45	90.2	131.78	143.1	173.36	72.99
Merged-chr7-127254272-3	chr7	127254153	127254353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6414.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	89.24	103.88	70.74	77.22	100.23	105.36	67.43	67.63	153.22	134.06	140.19	103.06
Merged-chr10-127674905-3	chr10	127674780	127674980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2185.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	26.25	33.7	21.11	28.56	19.64	39.51	28.57	44.44	33.63	47.2	40.7	33.21
Merged-chr11-8624742-3	chr11	8624640	8624840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	CpG	39795.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	26.65	34.46	32.52	24.53	25.36	30.1	23.58	34.26	38.75	25.61	38.19	13.78
Merged-chr18-70436388-3	chr18	70436290	70436490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36064.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	109.43	84.76	164.86	138.76	123.14	158.67	103.64	144.65	154.79	124.02	164.31	67.98
Merged-chr11-74832952-3	chr11	74832866	74833066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2042.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	74.7	78.23	65.6	50.68	84.68	97.21	64.77	75.84	85.17	90.88	89.94	50.44
Merged-chrX-13281914-3	chrX	13281836	13282036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010028, intron 1 of 16)	CpG	914.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	44.42	35.47	59.9	36.2	59.32	51.74	50.49	39.98	89.1	63.27	80.4	30.7
Merged-chr12-85339464-3	chr12	85339383	85339583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-121.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	48.46	38.48	52.48	33.38	69.96	68.99	44.18	35.02	51.93	68.29	68.34	38.85
Merged-chr2-120128770-3	chr2	120128664	120128864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	25811.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	23.82	16.85	35.37	32.98	29.46	26.97	24.58	34.46	25.18	32.64	42.21	21.93
Merged-chr13-12575166-3	chr13	12575057	12575257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026184, intron 2 of 15)	intron (NM_026184, intron 2 of 15)	9274.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	20.19	12.07	16.54	26.14	22.09	30.42	23.58	25.07	38.75	21.09	27.13	24.75
Merged-chrX-73786575-3	chrX	73786472	73786672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166480)	promoter-TSS (NM_001166480)	325.0	NM_008323	15929.0	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	10.5	13.83	16.54	16.49	26.18	20.7	14.28	14.22	24.78	27.62	28.64	13.47
Merged-chr2-26475221-3	chr2	26475119	26475319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 15 of 33)	intron (NM_008714, intron 15 of 33)	-5100.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	47.24	39.49	69.03	52.29	68.32	48.92	23.92	37.09	56.84	31.63	44.22	27.88
Merged-chr7-63937792-3	chr7	63937688	63937888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	CpG	1127.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	146.58	128.53	143.18	131.12	142.37	167.45	131.21	147.93	200.03	169.21	272.35	112.78
Merged-chr19-6293483-3	chr19	6293381	6293581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12976.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	113.47	109.67	175.13	96.13	103.91	180.93	122.24	107.55	132.17	146.61	178.38	76.44
Merged-chr11-75468079-1	chr11	75467979	75468179	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291156)	promoter-TSS (NM_001291156)	29.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	6.06	6.29	2.28	2.41	14.32	15.05	5.65	9.08	5.31	8.54	5.53	4.07
Merged-chr17-11613268-2	chr17	11613160	11613360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	269929.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	14.54	14.34	25.67	24.13	5.73	9.72	4.65	15.0	1.97	8.03	4.52	7.21
Merged-chr3-69005942-3	chr3	69005830	69006030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356976, intron 1 of 23)	CpG	1192.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	48.86	65.15	37.08	43.84	42.14	62.4	37.2	34.21	70.61	68.29	67.33	32.27
Merged-chr4-86575703-3	chr4	86575602	86575802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	29.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	79.14	58.86	56.48	63.95	67.5	88.74	51.82	83.08	103.26	105.94	116.58	64.22
Merged-chr5-35583570-3	chr5	35583476	35583676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357020, exon 1 of 19)	5' UTR (NM_001357020, exon 1 of 19)	542.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	53.3	28.67	34.23	27.35	51.55	67.1	16.28	46.37	68.25	56.24	52.76	26.94
Merged-chr13-55447845-3	chr13	55447747	55447947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	2516.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	25.84	34.21	38.22	26.14	43.36	38.26	43.18	39.95	61.56	70.8	78.89	33.83
Merged-chr8-114439528-3	chr8	114439426	114439626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-126.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	182.52	187.64	171.14	205.52	183.28	238.0	193.32	192.08	324.14	340.93	394.95	175.12
Merged-chr14-78651801-1	chr14	78651701	78651901	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 3 of 29)	intron (NM_001081336, intron 3 of 29)	-7350.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	5.65	11.57	7.99	11.26	4.5	5.02	8.64	10.91	7.47	5.52	3.52	3.45
Merged-chr16-78217098-3	chr16	78216987	78217187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38367.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	130.43	133.06	119.23	126.69	82.64	92.82	99.32	132.34	124.11	89.88	145.22	76.12
Merged-chr18-84685700-3	chr18	84685600	84685800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023149)	promoter-TSS (NM_023149)	2.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	195.84	182.86	203.08	205.12	242.6	295.07	193.99	248.5	294.84	252.06	372.84	160.71
Merged-chr2-120100101-3	chr2	120100004	120100204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	54471.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	44.42	31.94	29.09	41.43	49.5	40.14	31.89	46.35	54.68	54.73	71.35	46.36
Merged-chr17-31594785-3	chr17	31594686	31594886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027493, intron 6 of 11)	L1MD|LINE|L1	30013.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	50.47	70.43	102.68	83.66	67.09	75.26	45.84	90.0	95.39	96.4	82.41	63.91
Merged-chr3-158062296-3	chr3	158062152	158062352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25570.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	27.05	19.87	21.11	22.12	18.41	29.79	30.56	20.58	15.93	35.15	23.11	16.92
Merged-chr2-127584721-3	chr2	127584610	127584810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028141)	promoter-TSS (NM_028141)	-33.0	NM_028141	72180.0	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	27.05	36.72	28.52	30.57	49.91	62.71	35.87	47.33	36.39	36.65	36.68	21.62
Merged-chr18-34859905-3	chr18	34859814	34860014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1293.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	151.42	147.65	157.45	108.59	130.09	181.56	100.32	122.69	144.57	165.19	237.17	111.52
Merged-chr14-63082310-3	chr14	63082196	63082396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	27223.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	67.43	47.54	79.86	52.29	108.41	96.58	89.02	115.77	108.38	71.3	104.01	62.34
Merged-chr17-31003462-2	chr17	31003366	31003566	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	48783.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.0	2.26	6.28	3.62	10.23	21.32	20.93	23.47	20.65	16.07	30.65	18.8
Merged-chr8-95633469-3	chr8	95633384	95633584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	-75.0	NM_030198	78833.0	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	39.98	41.25	45.64	47.86	35.18	45.15	39.86	46.43	58.02	53.73	68.84	33.21
Merged-chr19-56749612-3	chr19	56749525	56749725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27253.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	36.75	29.68	42.21	45.05	40.09	43.59	32.55	51.31	41.89	28.12	53.26	20.99
Merged-chr6-83381816-3	chr6	83381696	83381896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 5 of 11)	intron (NM_001347313, intron 5 of 11)	19306.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	52.09	73.95	88.99	87.68	48.27	53.93	61.78	58.99	55.86	48.2	76.38	31.01
Merged-chr7-88278003-3	chr7	88277869	88278069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-116.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	123.16	152.93	180.83	140.77	143.6	174.97	150.81	165.87	215.18	201.34	301.99	133.14
Merged-chr7-30953591-3	chr7	30953499	30953699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3204.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	119.52	100.61	116.37	104.17	147.69	152.4	106.29	126.76	152.83	133.06	157.78	75.18
Merged-chr11-75651327-5	chr11	75651239	75651439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-170.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	21.8	24.15	18.83	14.48	29.46	25.71	27.9	21.11	26.36	45.69	32.16	33.21
Merged-chr5-139324987-3	chr5	139324883	139325083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	481.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	17.36	19.12	32.52	20.91	29.05	39.82	18.6	23.58	34.81	21.09	20.1	20.99
Merged-chr7-80641644-3	chr7	80641528	80641728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	5611.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	37.15	33.45	48.49	34.99	51.55	43.9	39.53	32.64	61.56	68.29	71.86	34.46
Merged-chr4-128727506-3	chr4	128727395	128727595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-76.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	35.53	29.68	25.1	29.36	41.32	48.29	20.59	27.39	39.14	46.7	68.84	27.88
Merged-chr15-78321040-3	chr15	78320941	78321141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4759.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	49.67	34.71	53.05	35.8	38.86	54.56	46.17	40.4	50.55	38.16	53.77	22.87
Merged-chr1-74368443-3	chr1	74368344	74368544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	6336.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	61.78	49.55	75.3	67.17	79.37	104.73	100.98	115.85	118.21	108.96	205.01	88.03
Merged-chr9-72985488-3	chr9	72985393	72985593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114328)	promoter-TSS (NM_001114328)	-11.0	NM_001286545	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	161.52	151.67	171.71	165.71	156.69	176.86	134.86	179.66	206.33	190.8	297.97	131.26
Merged-chr18-77856782-3	chr18	77856688	77856888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-60398.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	24.23	24.65	33.66	35.39	35.59	40.14	28.57	57.62	41.3	39.16	45.22	22.87
Merged-chr1-39579345-3	chr1	39579244	39579444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1997.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	24.23	26.91	35.37	28.15	38.86	43.9	57.8	56.75	47.01	46.7	58.29	35.09
Merged-chr19-4231822-3	chr19	4231711	4231911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027196)	promoter-TSS (NM_027196)	-82.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	130.02	134.82	132.92	117.44	156.69	212.6	97.66	123.17	148.5	146.11	165.82	95.86
Merged-chr2-122234834-3	chr2	122234760	122234960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	21.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	20.19	22.64	31.95	24.53	34.36	26.03	17.27	23.07	25.18	23.1	40.2	19.42
Merged-chr4-141076839-3	chr4	141076755	141076955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149724, intron 1 of 8)	intron (NR_149724, intron 1 of 8)	1502.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	41.99	50.56	50.2	28.56	36.82	65.22	38.2	45.87	45.24	43.68	61.3	31.01
Merged-chr16-21637523-3	chr16	21637405	21637605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	57160.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	35.94	20.88	66.74	66.77	58.5	52.05	109.28	102.79	62.15	58.75	119.09	51.69
Merged-chr16-22119723-3	chr16	22119646	22119846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43553.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	54.11	45.53	52.48	41.02	45.0	65.22	37.2	65.16	62.55	41.67	103.51	40.41
Merged-chr9-4309705-3	chr9	4309600	4309800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-43.0	NM_001164574	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	345.65	357.67	354.82	373.64	376.78	453.43	338.81	442.88	515.32	533.24	610.52	313.89
Merged-chr9-107872845-3	chr9	107872750	107872950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-31.0	NM_029169	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	120.73	112.68	134.06	104.97	113.73	139.85	77.06	110.27	127.45	118.5	187.93	74.24
Merged-chr13-9424700-3	chr13	9424596	9424796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	MTA_Mm|LTR|ERVL-MaLR	148171.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	30.69	33.7	37.65	43.04	27.41	21.64	28.57	16.79	33.04	44.69	32.66	26.31
Merged-chr6-108065316-3	chr6	108065213	108065413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	268.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	155.87	124.76	123.79	147.21	178.37	187.52	138.85	183.42	224.22	239.5	316.06	178.88
Merged-chr2-151587500-1	chr2	151587400	151587600	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145535, intron 7 of 8)	intron (NM_145535, intron 7 of 8)	14877.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	4.04	2.01	8.56	6.84	2.05	2.82	11.29	10.79	4.13	3.51	6.03	5.33
Merged-chr11-32642461-3	chr11	32642376	32642576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271349)	promoter-TSS (NM_001271349)	-79.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	91.66	97.84	83.29	77.62	86.32	114.45	54.48	83.41	120.96	112.97	126.63	85.84
Merged-chr13-41801525-1	chr13	41801425	41801625	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	45963.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	2.42	5.28	6.85	2.82	16.77	1.88	4.32	10.04	3.34	2.01	7.54	3.76
Merged-chr4-140173977-3	chr4	140173884	140174084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	31111.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	33.11	48.04	31.95	14.48	25.36	38.57	25.91	21.5	40.91	36.65	36.68	18.48
Merged-chr4-119978050-3	chr4	119977956	119978156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	163378.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	67.43	95.58	127.21	88.89	90.0	107.24	80.72	79.23	119.78	115.48	141.2	74.87
Merged-chr17-84183615-3	chr17	84183523	84183723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001806)	TTS (NM_001001806)	4324.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	52.49	58.1	40.5	41.83	53.59	73.06	38.86	69.5	81.04	54.73	95.47	51.69
Merged-chr11-74505505-3	chr11	74505343	74505543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	84715.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	11.31	19.12	27.95	23.33	12.27	18.81	17.27	15.76	24.78	17.57	26.63	12.84
Merged-chr5-24266650-3	chr5	24266523	24266723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9095.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	19.79	42.51	19.4	26.55	53.18	51.43	53.81	67.74	25.96	53.22	39.7	24.12
Merged-chr11-23771206-5	chr11	23771015	23771215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009044)	promoter-TSS (NM_009044)	-145.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	196.24	177.83	151.74	127.1	134.19	224.52	157.78	138.45	207.11	243.02	213.56	146.92
Merged-chr6-89415974-3	chr6	89415856	89416056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 5 of 6)	L2b|LINE|L2	-53343.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	24.23	33.96	26.81	29.76	18.0	39.82	32.88	32.47	32.06	35.65	34.17	18.8
Merged-chr16-59604287-3	chr16	59604185	59604385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32660.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	108.22	116.71	114.09	131.92	114.55	110.06	115.93	185.78	137.88	99.42	161.3	78.0
Merged-chr11-60769601-3	chr11	60769501	60769701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009410, intron 1 of 18)	MTD|LTR|ERVL-MaLR	7764.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	21.8	23.14	35.94	32.98	91.64	91.56	78.72	42.34	87.92	67.28	98.49	42.29
Merged-chr7-127876839-3	chr7	127876711	127876911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172749)	promoter-TSS (NM_172749)	25.0	NM_146259	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	21.4	14.09	23.39	21.32	24.14	39.51	22.59	14.92	29.7	22.09	24.62	19.11
Merged-chr2-84425310-3	chr2	84425190	84425390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-24.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	40.78	42.01	79.86	66.36	54.0	57.7	40.19	69.48	73.56	49.21	77.88	38.53
Merged-chr14-21750561-3	chr14	21750463	21750663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	32.0	NM_001359954	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	48.86	54.83	47.35	43.04	63.0	58.64	30.89	51.14	72.77	68.79	80.4	47.93
Merged-chr2-158163267-3	chr2	158163186	158163386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16894.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	18.57	12.58	31.38	22.52	18.0	18.5	17.27	29.94	26.75	15.06	24.62	22.87
Merged-chr16-38131973-3	chr16	38131886	38132086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-42726.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	52.09	48.04	47.92	54.7	39.27	57.38	36.87	32.89	83.59	65.27	104.52	58.27
Merged-chr4-128720238-3	chr4	128720122	128720322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-7349.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	53.7	38.99	73.02	53.49	63.82	90.31	80.05	83.86	68.05	82.85	107.03	56.39
Merged-chr2-79214121-1	chr2	79214021	79214221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41305.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	2.83	6.04	6.28	13.67	3.68	3.76	13.62	10.09	4.13	8.03	4.02	2.82
Merged-chr4-75278306-3	chr4	75278205	75278405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-13.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	138.1	163.24	135.2	169.73	152.19	190.97	109.28	212.02	238.58	254.57	180.89	145.67
Merged-chr8-128654622-8	chr8	128654455	128654655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31099.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	77.53	76.72	84.43	100.55	72.0	81.84	83.71	71.55	89.1	102.43	112.56	49.81
Merged-chr16-36936042-3	chr16	36935918	36936118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1035.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	60.17	52.57	62.75	62.34	85.09	70.24	42.19	63.36	66.48	79.33	103.01	43.54
Merged-chr3-131272068-3	chr3	131271983	131272183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008212)	promoter-TSS (NM_008212)	18.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	77.12	49.8	45.64	76.42	92.05	94.39	66.43	115.82	98.93	88.87	131.65	51.38
Merged-chr4-8910547-3	chr4	8910422	8910622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	159198.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	18.57	25.4	29.09	26.14	29.46	37.32	21.26	27.45	47.21	43.18	67.84	38.53
Merged-chr13-84348123-1	chr13	84348023	84348223	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	125827.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	5.65	6.79	6.85	3.22	15.96	19.13	16.61	24.17	14.55	6.03	9.55	5.33
Merged-chr1-64374880-3	chr1	64374800	64375000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157904.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	148.19	153.68	140.9	162.89	177.55	197.55	170.07	182.61	218.32	226.95	249.73	124.05
Merged-chr5-146948637-3	chr5	146948534	146948734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-23.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	73.89	58.35	61.61	63.15	52.77	63.03	43.18	60.5	114.87	134.56	128.64	89.28
Merged-chr6-83078536-3	chr6	83078430	83078630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197992, intron 1 of 8)	CpG	140.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	44.42	56.09	50.2	39.82	50.73	56.13	53.15	37.85	47.4	65.27	46.73	47.93
Merged-chr9-41073690-3	chr9	41073590	41073790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	5816.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	24.23	15.09	38.22	24.53	22.09	14.11	21.59	33.62	37.57	16.07	30.65	14.72
Merged-chr6-17611829-3	chr6	17611717	17611917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-25193.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	32.3	31.19	48.49	34.59	36.82	45.78	27.9	50.38	58.61	54.23	85.42	32.27
Merged-chr9-66974962-3	chr9	66974861	66975061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030717, intron 1 of 5)	CpG	523.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	62.59	57.1	62.75	67.97	89.18	84.04	50.16	69.73	78.28	61.76	110.04	43.86
Merged-chr15-38285793-3	chr15	38285696	38285896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14104.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	44.82	65.9	67.31	72.4	58.09	78.39	88.36	56.36	67.66	96.91	109.04	57.33
Merged-chr8-35428299-3	chr8	35428205	35428405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52564.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	45.23	31.69	60.47	46.66	53.59	71.18	61.78	72.98	41.5	42.18	70.85	37.59
Merged-chr6-100416204-3	chr6	100416110	100416310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111190.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	36.75	28.42	66.17	30.57	20.86	22.26	30.89	40.93	30.68	15.57	33.67	22.56
Merged-chr6-113663507-3	chr6	113663379	113663579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	25012.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	48.86	48.54	44.5	40.62	58.91	69.93	37.2	49.63	68.25	67.28	68.34	43.23
Merged-chr4-98322444-3	chr4	98322339	98322539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60826.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	16.96	17.36	23.39	24.94	39.68	39.51	29.56	40.91	41.3	26.11	57.79	23.81
Merged-chr17-69201149-3	chr17	69201045	69201245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	41789.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	56.13	79.99	97.55	78.43	65.87	78.08	61.45	86.16	88.31	88.37	97.98	52.32
Merged-chr5-148542397-3	chr5	148542309	148542509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	9264.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	57.74	48.54	75.3	88.48	41.32	42.02	45.51	49.43	40.32	46.7	87.43	36.34
Merged-chr11-121703378-3	chr11	121703278	121703478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	951.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	95.3	93.32	73.59	73.2	85.09	99.72	57.13	81.39	120.57	103.43	153.26	78.32
Merged-chr2-174329897-3	chr2	174329828	174330028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-142.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	35.53	28.67	22.82	43.44	28.64	25.71	29.23	26.1	34.22	47.7	32.16	24.12
Merged-chr12-104231030-3	chr12	104230927	104231127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-5120.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	53.3	45.78	96.41	78.43	44.59	55.5	50.16	59.52	70.02	41.67	80.9	43.23
Merged-chr15-94543657-3	chr15	94543550	94543750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	-10.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	104.18	138.09	117.51	152.43	151.37	146.44	149.81	131.97	172.3	169.71	306.51	119.98
Merged-chr17-80564770-3	chr17	80564687	80564887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-953.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	84.8	77.97	88.99	84.06	59.32	97.21	73.41	72.48	103.46	93.89	103.01	73.93
Merged-chr11-100860415-3	chr11	100860329	100860529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164062)	promoter-TSS (NM_001164062)	-55.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	108.62	88.79	74.16	94.92	102.28	127.31	67.43	92.89	104.05	107.45	95.47	54.51
Merged-chr1-105663233-3	chr1	105663137	105663337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	439.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	33.92	25.91	35.37	34.59	31.5	45.15	36.54	51.53	43.07	47.2	65.83	37.59
Merged-chr6-120357415-3	chr6	120357311	120357511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026028)	promoter-TSS (NM_026028)	58.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	64.61	65.65	93.55	110.6	85.5	92.19	66.43	95.08	85.56	70.8	111.05	70.17
Merged-chr11-4849582-3	chr11	4849472	4849672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361676)	promoter-TSS (NM_001361676)	-28.0	NM_010898	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	170.4	154.69	196.24	165.3	210.69	207.9	156.12	179.92	236.03	235.49	278.88	136.27
Merged-chr17-80009016-3	chr17	80008913	80009113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53255.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	23.82	19.62	39.36	14.48	32.73	46.72	22.59	35.47	42.68	18.58	47.23	14.1
Merged-chr14-47351620-2	chr14	47351508	47351708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR1B|LTR|ERV1	-22252.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	19.79	11.82	22.25	14.88	30.68	43.27	30.89	27.59	2.36	0.5	6.53	6.27
Merged-chr7-35036352-1	chr7	35036252	35036452	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20214.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	1.62	4.53	5.13	5.63	4.91	5.33	25.58	23.86	1.77	8.03	7.03	3.45
Merged-chr10-89443339-3	chr10	89443250	89443450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	617.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	183.73	159.47	211.07	238.91	209.05	238.0	225.88	259.26	254.51	241.51	283.9	160.39
Merged-chr19-6418708-3	chr19	6418616	6418816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-22.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	28.27	18.86	17.68	19.71	29.86	29.48	16.61	21.9	30.88	27.62	35.68	26.31
Merged-chrX-73765463-3	chrX	73765311	73765511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019587, intron 15 of 34)	intron (NM_019587, intron 15 of 34)	8308.0	NM_019587	140571.0	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	16.15	11.07	13.69	12.87	18.82	12.23	8.64	16.46	17.9	22.09	19.6	9.08
Merged-chr2-156417422-3	chr2	156417329	156417529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3480.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	14.54	14.34	30.23	14.88	24.96	30.73	29.56	39.9	30.68	32.13	37.18	23.81
Merged-chr18-62186622-3	chr18	62186509	62186709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6509.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	19.79	14.84	22.82	19.31	26.59	29.16	23.92	24.36	19.87	27.62	21.1	17.86
Merged-chr9-78532232-3	chr9	78532119	78532319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50495.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	20.19	17.86	34.23	21.72	29.86	35.75	27.9	37.15	49.57	49.21	37.69	18.8
Merged-chr19-43521367-3	chr19	43521227	43521427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	3278.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	20.59	14.84	26.24	20.11	20.86	21.64	13.29	23.97	43.86	24.6	44.72	30.07
Merged-chr9-15279965-3	chr9	15279878	15280078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-111.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	123.97	130.79	168.28	160.88	145.64	143.93	125.23	162.31	183.71	163.69	220.59	98.05
Merged-chr12-76961634-3	chr12	76961569	76961769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 1 of 4)	intron (NM_001361663, intron 1 of 4)	579.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	22.61	19.37	14.26	14.08	19.23	15.99	20.59	14.8	26.95	28.12	19.6	26.63
Merged-chr3-103214351-1	chr3	103214251	103214451	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	42696.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	2.83	0.5	6.85	3.22	6.55	2.82	6.64	3.11	24.98	23.1	36.68	19.42
Merged-chr1-148764886-1	chr1	148764786	148764986	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	1157553.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.83	2.52	7.99	6.44	0.82	3.14	12.62	11.89	4.13	2.51	7.03	2.51
Merged-chr6-83650722-1	chr6	83650622	83650822	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5394.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.81	0.25	0.0	2.41	3.68	2.51	5.65	7.15	4.13	2.01	4.02	2.51
Merged-chr11-29728109-3	chr11	29728003	29728203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	9540.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	32.3	24.15	43.93	34.59	56.46	46.41	45.18	55.18	56.84	25.11	44.22	18.48
Merged-chr10-9707194-3	chr10	9707073	9707273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22451.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	67.84	55.84	71.31	86.88	110.05	120.1	87.69	132.45	115.85	80.34	133.16	69.23
Merged-chr8-86888081-3	chr8	86887979	86888179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2821.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	124.37	127.02	110.1	109.8	177.14	225.15	101.98	114.62	192.75	168.71	201.5	82.39
Merged-chr5-8422777-3	chr5	8422680	8422880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289595)	promoter-TSS (NM_001289595)	-58.0	NM_001289596	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	220.88	202.73	233.32	248.96	303.15	284.41	200.3	350.05	327.68	298.75	435.15	157.57
Merged-chr14-102982659-4	chr14	102982548	102982748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-11.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	165.15	182.11	144.33	137.15	164.05	170.9	147.15	159.93	256.48	292.73	359.28	165.4
Merged-chr7-98321276-3	chr7	98321180	98321380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-72.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	26.25	31.94	28.52	38.61	34.36	34.18	25.58	41.22	30.29	39.67	37.69	25.06
Merged-chr12-83688614-3	chr12	83688485	83688685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	22.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	31.5	26.91	25.1	35.39	43.36	57.7	36.54	28.54	48.19	45.19	45.22	34.15
Merged-chr4-109413966-1	chr4	109413866	109414066	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153392, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	-1681.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	1.21	2.52	6.85	1.61	28.23	37.32	12.95	18.87	3.54	3.01	8.04	3.76
Merged-chr18-61131490-3	chr18	61131387	61131587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037859)	TTS (NM_001037859)	14019.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	18.57	16.85	18.83	26.95	26.59	25.4	15.94	20.47	34.81	43.68	36.18	14.41
Merged-chr5-105012712-3	chr5	105012613	105012813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-29996.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	37.96	41.0	31.95	49.87	48.68	37.63	36.21	48.48	52.12	47.7	56.28	31.01
Merged-chr5-114928425-3	chr5	114928307	114928507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359945, intron 2 of 5)	intron (NM_001359945, intron 2 of 5)	5167.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	25.04	58.35	40.5	29.36	25.36	68.99	24.91	16.96	66.28	44.69	52.76	23.81
Merged-chr3-109051907-3	chr3	109051794	109051994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24287.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	28.67	32.7	56.48	37.0	21.27	38.88	38.2	27.67	25.96	23.1	27.13	19.11
Merged-chr11-120643804-3	chr11	120643713	120643913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348222)	promoter-TSS (NM_001348222)	-44.0	NM_001348222	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	39.17	30.94	39.36	27.75	59.32	51.11	18.27	35.44	63.53	44.19	63.31	30.7
Merged-chr2-32775660-3	chr2	32775543	32775743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	-10.0	NM_001290563	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	79.55	87.28	70.74	92.1	104.73	90.94	59.46	62.19	86.94	88.87	102.0	59.52
Merged-chr11-29373562-3	chr11	29373483	29373683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	-589.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	131.23	108.91	99.83	105.38	96.96	142.36	78.39	118.04	116.05	153.14	154.76	73.93
Merged-chr13-23739781-3	chr13	23739670	23739870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_015786)	TTS (NM_015786)	963.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	59.36	53.32	116.94	86.07	96.96	102.85	101.98	119.8	105.82	98.91	185.42	88.34
Merged-chr14-118132803-3	chr14	118132688	118132888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029578)	promoter-TSS (NM_029578)	-23.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	55.32	67.91	58.19	50.27	63.41	74.94	51.49	72.03	92.05	88.87	96.98	45.74
Merged-chr3-69721994-3	chr3	69721890	69722090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133787)	promoter-TSS (NM_133787)	-65.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	67.84	70.68	73.59	78.83	112.5	149.89	88.69	103.37	157.55	164.69	148.23	98.99
Merged-chr10-100589207-3	chr10	100589095	100589295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	64.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	58.55	54.08	69.03	75.61	71.59	68.05	79.39	102.42	67.86	60.75	99.49	45.42
Merged-chr4-3574874-3	chr4	3574769	3574969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054089)	promoter-TSS (NM_054089)	-10.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	43.21	43.77	40.5	51.88	55.64	79.33	28.9	65.3	80.25	63.77	90.45	41.04
Merged-chr6-122654571-3	chr6	122654458	122654658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	28134.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	211.99	205.75	203.65	161.28	166.1	246.78	164.42	144.73	204.75	208.88	205.01	134.39
Merged-chr13-107903743-3	chr13	107903608	107903808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13644.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	111.04	77.22	153.45	119.05	118.23	97.52	113.6	124.71	120.77	141.09	138.18	105.57
Merged-chr10-26780751-3	chr10	26780656	26780856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	8244.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	34.73	28.17	29.09	35.8	35.18	40.14	42.52	55.32	40.71	36.15	23.11	21.3
Merged-chr14-73388715-3	chr14	73388589	73388789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3400.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	45.63	38.99	55.9	83.26	53.18	35.43	53.81	88.99	54.48	72.81	52.26	46.36
Merged-chr4-150202899-3	chr4	150202796	150202996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1761.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	34.32	36.97	67.31	43.44	50.32	43.27	37.87	53.47	60.58	56.24	91.95	36.65
Merged-chr19-6067944-3	chr19	6067855	6068055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028454)	promoter-TSS (NM_028454)	-105.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	64.61	32.2	75.87	36.6	72.82	49.54	36.54	58.82	71.59	55.23	66.83	37.59
Merged-chr10-81627590-5	chr10	81627422	81627622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181586)	promoter-TSS (NM_181586)	86.0	NM_181586	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	27.46	31.19	18.83	21.32	29.46	47.04	25.24	26.69	31.47	28.62	42.71	24.43
Merged-chr7-120940499-1	chr7	120940399	120940599	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025298, exon 18 of 21)	exon (NM_025298, exon 18 of 21)	22755.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	4.04	0.0	0.57	5.63	5.73	14.42	15.61	18.14	2.16	0.5	4.52	1.88
Merged-chr6-42353392-3	chr6	42353293	42353493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3565.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	95.3	71.43	99.26	110.2	146.46	105.67	91.35	137.86	98.54	114.48	173.86	86.46
Merged-chr11-106779515-3	chr11	106779396	106779596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027785)	promoter-TSS (NR_027785)	-30.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	80.76	71.94	61.61	65.56	86.32	103.79	45.18	55.68	90.67	114.98	98.49	48.56
Merged-chr4-150281540-3	chr4	150281425	150281625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085492)	promoter-TSS (NM_001085492)	-391.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	67.43	50.56	55.9	53.09	66.27	77.45	39.86	47.55	86.54	66.78	128.64	36.97
Merged-chr4-133757559-3	chr4	133757485	133757685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3974.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	32.3	20.12	45.64	24.94	22.09	26.65	21.26	17.27	25.18	28.62	35.17	17.54
Merged-chr6-122946932-3	chr6	122946788	122946988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-5627.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	55.32	45.53	42.21	52.69	56.87	38.57	38.53	40.79	47.6	40.17	45.73	27.25
Merged-chr9-20643339-3	chr9	20643259	20643459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	23.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	50.47	55.84	40.5	45.45	58.09	76.2	30.89	45.28	70.81	47.2	104.01	37.28
Merged-chr14-41013814-3	chr14	41013714	41013914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316735)	promoter-TSS (NM_001316735)	19.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	49.67	23.9	29.66	50.27	51.96	55.19	38.53	64.96	62.35	59.75	95.97	63.91
Merged-chr15-53324474-3	chr15	53324379	53324579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	21704.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	19.38	22.39	31.38	25.74	22.5	25.4	22.92	30.11	42.48	21.09	35.68	18.17
Merged-chr10-23787294-3	chr10	23787221	23787421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-112.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	170.4	145.89	129.49	148.81	153.41	195.67	120.58	132.11	218.32	188.79	232.65	91.47
Merged-chr11-117115043-3	chr11	117114902	117115102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029459)	promoter-TSS (NR_029459)	-170.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	56.94	58.86	52.48	46.25	61.37	92.5	43.18	33.14	94.21	87.37	70.35	55.76
Merged-chr1-134078343-2	chr1	134078236	134078436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	819.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	24.63	24.15	22.82	16.89	16.36	24.77	17.61	13.32	18.69	19.08	30.65	21.3
Merged-chr2-167740993-3	chr2	167740890	167741090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49813.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	33.92	23.64	25.67	19.31	43.77	35.75	27.24	48.06	39.93	53.73	48.74	26.31
Merged-chr2-169756444-1	chr2	169756344	169756544	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	122798.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	1.01	1.14	0.0	0.0	0.63	0.0	0.39	38.16	19.08	20.6	10.96
Merged-chr8-66438062-3	chr8	66437956	66438156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	48474.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	44.82	43.26	70.74	58.32	59.32	59.89	45.84	57.31	66.09	50.71	95.47	46.68
Merged-chr10-79767613-3	chr10	79767486	79767686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-634.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	21.8	10.82	17.68	12.87	9.0	14.74	9.63	11.13	22.23	22.09	22.61	18.48
Merged-chr8-23257161-3	chr8	23257127	23257327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042484)	promoter-TSS (NM_001042484)	-147.0	NM_001042484	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	50.47	33.7	51.34	48.67	58.09	52.05	45.51	49.65	60.38	40.17	61.81	31.64
Merged-chrX-102189295-3	chrX	102189191	102189391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009094)	promoter-TSS (NM_009094)	100.0	NM_009094	20102.0	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	27.86	36.22	21.68	27.35	31.91	32.61	26.91	30.08	27.93	40.67	25.63	24.12
Merged-chr16-38562831-3	chr16	38562750	38562950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	36.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	65.41	67.91	62.18	47.86	71.59	67.73	32.55	59.66	68.05	83.85	89.44	42.6
Merged-chr19-34550643-3	chr19	34550554	34550754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	-40.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	21.0	21.38	18.83	31.37	20.05	22.89	13.95	26.1	25.18	25.61	57.79	25.69
Merged-chr10-81292839-3	chr10	81292733	81292933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008844)	promoter-TSS (NM_008844)	-130.0	NM_008844	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	241.47	217.82	261.27	255.8	292.1	396.04	234.51	254.75	350.89	354.49	412.04	210.2
Merged-chr7-43669439-5	chr7	43669340	43669540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2591.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	18.98	13.58	15.4	17.7	10.23	44.21	14.28	22.68	40.52	45.19	56.28	34.77
Merged-chr1-87626578-3	chr1	87626492	87626692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	6280.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	164.34	124.0	161.44	153.64	162.82	180.3	139.18	180.45	208.29	183.77	286.92	146.61
Merged-chr4-126024665-3	chr4	126024574	126024774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	15.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	48.05	50.56	42.21	27.75	38.05	70.24	17.61	32.19	61.96	69.79	60.3	25.06
Merged-chr19-16252905-3	chr19	16252811	16253011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	62093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	33.52	34.21	69.03	60.33	47.46	59.89	39.86	61.82	52.12	44.19	49.75	28.82
Merged-chr13-5875646-3	chr13	5875565	5875765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14176.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	27.05	22.64	21.11	25.34	44.18	57.38	42.85	63.2	39.53	46.7	43.72	17.23
Merged-chr17-6742317-3	chr17	6742206	6742406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 9 of 12)	intron (NM_009510, intron 9 of 12)	36476.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	44.42	35.47	62.18	58.32	85.5	70.55	59.46	96.98	80.64	49.71	90.95	50.75
Merged-chr11-9334994-3	chr11	9334894	9335094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 26 of 61)	intron (NM_178259, intron 26 of 61)	143052.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	29.88	33.2	31.95	31.37	25.36	28.22	23.58	42.9	83.59	71.3	105.02	44.17
Merged-chr8-25044286-3	chr8	25044204	25044404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-5342.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	23.02	14.09	14.83	8.04	12.68	23.2	17.61	29.3	27.93	23.6	25.63	20.68
Merged-chr1-71102525-3	chr1	71102429	71102629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007525, intron 1 of 10)	CpG	443.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	27.05	37.73	30.8	29.76	37.23	30.42	24.25	35.05	54.48	57.74	73.36	32.89
Merged-chr4-102584849-3	chr4	102584749	102584949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-2709.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	44.82	31.19	82.15	54.7	73.64	68.36	73.41	81.59	71.59	78.83	107.53	49.18
Merged-chr9-121705343-1	chr9	121705243	121705443	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178677)	promoter-TSS (NM_178677)	-314.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	27.46	30.94	33.66	31.37	49.91	33.87	26.24	37.54	48.19	64.27	71.35	46.99
Merged-chr15-76343513-3	chr15	76343371	76343571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025567)	promoter-TSS (NM_025567)	-52.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	22.61	20.37	27.95	19.71	54.82	40.14	31.22	34.85	56.25	44.69	69.34	18.17
Merged-chr12-25213998-3	chr12	25213909	25214109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84835.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	180.5	169.78	201.94	149.22	226.23	231.42	140.18	162.37	208.88	215.4	190.94	122.17
Merged-chr3-52070050-3	chr3	52069939	52070139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34967.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	68.65	68.42	81.0	68.37	83.46	89.68	55.47	76.29	98.74	73.31	99.49	51.06
Merged-chr9-65552446-3	chr9	65552379	65552579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153119)	TTS (NM_153119)	27608.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	83.18	94.07	103.25	94.92	99.0	126.06	113.27	132.81	103.26	59.75	96.48	68.92
Merged-chr3-10331301-3	chr3	10331202	10331402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001010834)	TTS (NM_001010834)	137.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	46.84	60.62	65.03	75.61	59.32	65.85	96.66	74.78	49.96	51.72	47.23	44.17
Merged-chr3-135720097-3	chr3	135719996	135720196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28549.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	33.11	36.47	41.64	32.98	27.41	31.04	22.26	34.09	50.35	37.16	33.67	30.39
Merged-chr14-32159340-1	chr14	32159240	32159440	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-547.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	7.27	13.83	4.56	6.44	19.64	12.86	16.28	9.25	11.01	18.08	7.54	7.21
Merged-chr4-19537552-3	chr4	19537465	19537665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027769, intron 7 of 15)	intron (NM_027769, intron 7 of 15)	32543.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	22.61	17.86	27.95	26.55	27.0	15.99	15.61	35.83	31.27	21.09	37.69	15.04
Merged-chr7-30559718-3	chr7	30559608	30559808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-62.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	155.87	131.05	135.2	172.54	144.41	177.48	111.28	198.7	178.59	173.73	224.11	136.58
Merged-chr19-43689686-3	chr19	43689586	43689786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-3.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	246.72	241.97	282.38	302.45	286.37	261.83	263.41	311.33	236.22	283.19	336.66	170.42
Merged-chr6-31804589-1	chr6	31804489	31804689	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-138458.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0.0	0.0	3.42	0.0	5.32	10.98	12.29	3.87	6.1	0.5	2.01	0.0
Merged-chr4-149781193-2	chr4	149781092	149781292	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6925.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	23.42	12.58	14.26	17.29	28.64	15.05	10.96	16.37	28.91	33.64	23.11	20.68
Merged-chr1-88573731-3	chr1	88573639	88573839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	22222.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	44.82	13.33	46.78	44.24	23.73	23.52	20.93	25.6	44.25	33.14	40.2	30.39
Merged-chr5-77460031-3	chr5	77459914	77460114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5474.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	17.36	34.21	30.8	21.32	40.5	50.49	24.58	42.17	49.57	49.71	49.24	28.51
Merged-chr10-57532484-3	chr10	57532383	57532583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019760)	promoter-TSS (NM_019760)	46.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	94.49	89.04	67.31	88.48	122.32	114.77	63.44	104.1	129.81	116.49	144.21	86.77
Merged-chr14-26534956-3	chr14	26534867	26535067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347494)	promoter-TSS (NM_001347494)	-343.0	NM_001310445	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	54.51	45.02	74.16	43.84	56.05	74.63	28.57	57.25	77.3	61.26	74.87	39.16
Merged-chr13-83075854-3	chr13	83075704	83075904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-377471.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	20.19	37.98	46.21	55.1	33.55	36.37	58.13	61.88	60.58	39.16	66.33	47.3
Merged-chr13-91371048-3	chr13	91370934	91371134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17051.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	62.18	47.79	61.04	48.67	58.91	63.34	48.83	65.89	50.16	55.73	60.8	30.39
Merged-chr9-99378205-3	chr9	99378124	99378324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	-19694.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	18.17	18.36	26.81	21.32	18.41	14.11	24.91	18.56	29.11	15.06	29.65	17.23
Merged-chr2-124610440-3	chr2	124610344	124610544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172537, exon 1 of 17)	5' UTR (NM_172537, exon 1 of 17)	148.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	173.63	151.17	195.1	253.39	214.78	196.3	274.37	306.03	234.65	201.85	398.47	176.68
Merged-chr7-39523936-3	chr7	39523906	39524106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004139, intron 1 of 3)	intron (NM_001004139, intron 1 of 3)	6240.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	17.36	19.62	21.68	20.51	18.82	22.58	13.29	25.18	24.39	24.1	18.09	14.72
Merged-chr12-55836273-3	chr12	55836173	55836373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-93.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	96.51	84.51	112.95	115.83	103.91	122.61	88.69	170.02	152.63	141.09	197.48	95.55
Merged-chr14-70774302-3	chr14	70774206	70774406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010071)	promoter-TSS (NM_010071)	-75.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	36.75	21.38	46.21	41.02	37.64	37.63	38.2	42.0	38.35	44.69	57.79	29.45
Merged-chr1-34842948-5	chr1	34842807	34843007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001160235, exon 1 of 8)	5' UTR (NM_001160235, exon 1 of 8)	143.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	13.73	24.15	10.27	14.08	25.77	26.34	33.55	15.42	33.44	39.67	27.13	20.68
Merged-chr7-45866211-3	chr7	45866146	45866346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008172, exon 1 of 12)	exon (NM_008172, exon 1 of 12)	435.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	29.48	37.98	22.25	45.05	51.14	43.9	33.22	44.02	47.01	41.67	42.71	28.82
Merged-chrX-20923642-3	chrX	20923545	20923745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2727.0	NM_013680	20964.0	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	50.88	32.45	78.72	67.57	71.18	77.14	73.41	76.09	68.45	70.29	76.38	46.99
Merged-chr16-8666684-3	chr16	8666566	8666766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	5487.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	23.82	18.36	29.66	20.91	49.09	74.94	25.91	49.23	61.96	42.68	54.77	41.35
Merged-chr19-29251692-3	chr19	29251599	29251799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-104.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	104.58	93.07	83.29	90.9	106.37	134.21	59.13	100.32	110.15	113.98	163.31	43.23
Merged-chr9-61705813-3	chr9	61705721	61705921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	208689.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	27.05	21.63	41.07	20.51	31.09	37.63	16.94	32.19	40.12	55.23	38.19	18.17
Merged-chr7-128523528-3	chr7	128523401	128523601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013863)	promoter-TSS (NM_013863)	-82.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	94.89	103.38	108.39	111.41	122.32	129.19	105.3	122.78	131.39	109.96	151.25	96.49
Merged-chr7-45095594-3	chr7	45095502	45095702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-3389.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	70.66	48.8	82.72	80.44	130.09	82.78	117.59	130.68	64.71	37.16	73.36	39.47
Merged-chr1-155417467-3	chr1	155417357	155417557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-13.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	141.73	125.51	141.47	139.97	141.55	153.34	130.88	130.54	193.15	183.77	176.87	103.38
Merged-chr2-116955094-3	chr2	116954976	116955176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54924.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	24.63	22.64	31.38	23.73	36.0	57.07	50.49	31.79	30.09	31.63	37.18	20.36
Merged-chr12-3667012-3	chr12	3666904	3667104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	L1M4|LINE|L1	94020.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	25.44	23.9	61.04	41.02	39.27	40.14	41.85	54.36	24.39	21.59	35.68	27.57
Merged-chr2-68382579-3	chr2	68382481	68382681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	89400.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	35.13	19.12	26.24	30.16	54.0	40.76	50.16	61.99	34.62	32.64	56.78	31.01
Merged-chr11-120824190-3	chr11	120824106	120824306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	341.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	42.8	37.73	37.08	23.73	25.77	37.63	30.89	34.6	44.45	51.21	49.75	33.21
Merged-chr2-52072814-3	chr2	52072725	52072925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175238)	promoter-TSS (NM_175238)	-12.0	NM_001355415	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	42.4	47.29	38.79	56.71	59.32	56.44	51.15	91.04	79.66	61.26	106.53	48.24
Merged-chr17-17402431-3	chr17	17402321	17402521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-265.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	28.67	34.21	37.08	52.29	49.5	64.6	50.16	52.23	50.94	63.77	62.81	27.25
Merged-chr2-128751138-3	chr2	128751050	128751250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 5 of 18)	(A)n|Simple_repeat|Simple_repeat	52235.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	20.59	18.36	37.08	20.11	27.82	42.65	20.26	28.29	32.85	32.64	35.17	26.94
Merged-chrX-162760289-3	chrX	162760182	162760382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009031)	promoter-TSS (NM_009031)	-90.0	NM_009031	245688.0	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7, chromatin remodeling factor	protein-coding	135.68	134.57	123.22	132.32	117.41	170.27	120.91	155.16	182.13	168.21	211.55	84.27
Merged-chr7-101050944-3	chr7	101050850	101051050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38897.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	41.99	51.31	65.6	36.6	82.23	94.39	69.76	68.8	67.27	73.81	52.26	59.83
Merged-chr2-167906964-3	chr2	167906853	167907053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-25374.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	13.73	14.84	22.25	22.52	22.5	31.36	23.25	16.12	31.86	33.14	32.16	19.42
Merged-chr18-53746839-2	chr18	53746736	53746936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2289.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	38.76	38.74	62.18	56.31	65.05	63.97	46.84	68.86	1.18	0.0	0.5	1.57
Merged-chr15-50888613-3	chr15	50888504	50888704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035444)	TTS (NR_035444)	445.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	34.73	49.05	37.65	47.86	51.14	56.44	34.21	59.78	61.96	49.21	68.34	33.52
Merged-chr7-97336837-3	chr7	97336745	97336945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039039, intron 1 of 1)	MTE2a|LTR|ERVL-MaLR	4522.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	47.65	62.63	66.74	32.18	54.82	65.22	27.9	61.18	30.29	32.64	40.2	24.75
Merged-chr13-41467322-3	chr13	41467214	41467414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20046.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	54.11	48.8	62.18	87.68	59.73	76.83	46.17	75.45	73.17	74.81	100.5	37.28
Merged-chr16-36709674-3	chr16	36709589	36709789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	15711.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	79.55	77.72	81.0	71.19	83.05	116.65	76.4	68.94	103.26	123.52	118.08	55.45
Merged-chr4-130360035-3	chr4	130359919	130360119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153160)	promoter-TSS (NM_153160)	-27.0	NM_153160	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	122.35	119.98	139.19	131.12	137.87	171.21	96.99	114.53	141.03	162.68	129.14	106.82
Merged-chr7-83655458-3	chr7	83655339	83655539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360089)	promoter-TSS (NM_001360089)	56.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	50.88	45.02	42.78	27.35	61.37	87.8	28.23	49.35	71.0	74.31	61.3	33.83
Merged-chr8-70765512-3	chr8	70765421	70765621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	1142.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	41.99	40.5	44.5	54.3	44.18	63.34	43.51	44.97	63.92	47.7	59.8	34.46
Merged-chr18-60723377-3	chr18	60723277	60723477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	4189.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	35.53	35.97	44.5	34.99	35.59	52.68	22.26	58.85	45.63	39.67	44.72	20.36
Merged-chr2-119547097-3	chr2	119547023	119547223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	504.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	106.2	87.28	115.23	108.19	104.73	167.76	68.76	84.87	111.52	108.45	137.18	64.53
Merged-chr15-98533968-3	chr15	98533863	98534063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	306.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	51.69	31.94	50.77	68.78	66.27	82.78	43.18	63.9	88.9	72.3	126.12	48.56
Merged-chr3-130073243-3	chr3	130073147	130073347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12340.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	32.3	34.46	39.93	39.42	55.64	69.93	47.5	53.92	67.27	64.77	87.93	29.13
Merged-chr5-21017327-3	chr5	21017227	21017427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 4 of 17)	Lx5|LINE|L1	17920.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	45.23	40.5	23.39	30.16	27.0	52.99	34.21	23.8	46.22	48.2	55.27	15.98
Merged-chr17-33909358-3	chr17	33909269	33909469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	-76.0	NR_149750	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	127.6	137.84	165.43	85.27	141.55	162.74	108.95	128.78	172.69	164.69	211.04	107.14
Merged-chr1-180829984-3	chr1	180829880	180830080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16375.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	58.95	51.81	71.31	43.04	88.78	86.23	52.48	84.98	97.16	82.35	114.06	52.94
Merged-chr3-14533829-3	chr3	14533735	14533935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028915)	promoter-TSS (NM_028915)	47.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	21.4	20.63	26.81	25.74	39.68	23.52	25.24	36.87	34.81	31.63	40.7	17.54
Merged-chr4-43025602-3	chr4	43025526	43025726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020035, exon 1 of 10)	5' UTR (NM_020035, exon 1 of 10)	148.0	NM_020035	56703.0	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	31.09	42.26	26.81	29.76	27.41	46.72	38.86	30.5	41.89	40.17	43.21	26.63
Merged-chr17-63863848-3	chr17	63863725	63863925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	-156.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	235.41	248.26	268.11	298.03	254.05	291.62	245.14	326.33	318.63	337.42	498.97	227.12
Merged-chr2-104687483-3	chr2	104687404	104687604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	24658.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	39.17	36.72	34.8	23.33	20.05	48.6	30.56	29.05	62.35	53.22	43.21	20.36
Merged-chr15-53139052-3	chr15	53138960	53139160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	207123.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	101.35	97.84	113.52	77.22	105.96	194.42	154.46	151.15	147.91	114.98	156.77	67.04
Merged-chr7-16615339-3	chr7	16615229	16615429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172739)	promoter-TSS (NM_172739)	-336.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	193.01	208.52	262.41	234.48	227.46	273.44	219.9	247.49	251.96	285.2	384.4	165.4
Merged-chrX-36804432-3	chrX	36804325	36804525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8828.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	34.73	28.67	51.91	39.01	37.64	30.73	44.84	39.65	47.99	37.16	32.66	15.98
Merged-chr10-19547032-3	chr10	19546919	19547119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44930.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	23.42	20.37	27.95	23.73	12.68	32.61	17.61	24.9	35.01	25.11	43.21	20.36
Merged-chr11-53818963-3	chr11	53818851	53819051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	40305.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	24.23	30.18	26.81	15.69	19.23	63.34	25.58	20.97	59.6	47.2	62.31	16.92
Merged-chr2-142901559-3	chr2	142901464	142901664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-100.0	NM_001355123	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	120.33	76.97	69.6	102.16	108.41	123.23	74.41	137.89	135.91	120.0	164.31	86.46
Merged-chr6-91685158-3	chr6	91685051	91685251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1084.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	60.57	59.11	49.63	45.85	65.46	70.55	50.49	67.96	68.84	69.29	95.47	61.71
Merged-chr16-10436467-3	chr16	10436363	10436563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	10899.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	48.05	37.98	58.19	49.07	57.68	96.27	55.47	71.33	60.19	53.73	66.83	26.63
Merged-chr5-107359540-3	chr5	107359435	107359635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054054, intron 11 of 18)	intron (NM_054054, intron 11 of 18)	28341.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	28.67	22.13	26.24	24.53	32.73	29.16	18.6	30.14	42.48	44.19	77.38	28.82
Merged-chr4-138288870-3	chr4	138288766	138288966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010623, intron 8 of 14)	intron (NM_010623, intron 8 of 14)	-15872.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	20.19	36.97	42.78	37.4	35.59	58.01	30.89	34.99	51.93	33.64	63.31	23.49
Merged-chr1-131690672-3	chr1	131690567	131690767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1972.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	23.02	15.34	43.35	38.61	48.68	43.9	47.83	55.51	35.6	59.25	79.39	40.72
Merged-chr18-64511121-3	chr18	64511034	64511234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142950, intron 5 of 14)	intron (NM_001142950, intron 5 of 14)	5423.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	35.94	23.64	43.93	45.05	38.86	38.26	23.58	43.96	51.93	32.64	74.87	36.03
Merged-chr14-70950134-3	chr14	70950051	70950251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	60044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	25.44	33.96	35.37	17.29	29.86	33.87	17.61	46.79	24.19	30.13	22.61	9.08
Merged-chr2-25224840-3	chr2	25224735	25224935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146116)	promoter-TSS (NM_146116)	-133.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	289.12	277.18	264.12	258.61	301.1	414.23	259.43	290.1	312.34	328.88	329.13	198.61
Merged-chr6-116674410-1	chr6	116674310	116674510	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	14.13	10.56	20.54	12.07	11.45	16.31	15.94	12.48	15.54	18.58	33.67	15.35
Merged-chr10-80071225-3	chr10	80071113	80071313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359635, intron 5 of 31)	intron (NM_001359635, intron 5 of 31)	4226.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	93.68	69.67	142.04	88.89	132.96	134.21	105.96	124.65	127.06	151.64	124.62	84.58
Merged-chr17-34235152-3	chr17	34235052	34235252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3753.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	28.27	32.2	28.52	14.08	16.36	16.93	13.62	12.06	41.89	38.16	37.18	19.74
Merged-chr19-40589440-3	chr19	40589332	40589532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-969.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	34.73	33.45	40.5	38.21	31.5	39.51	22.92	35.1	59.6	60.25	57.79	18.17
Merged-chr10-12869399-3	chr10	12869300	12869500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7665.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	57.34	75.46	51.91	51.08	51.14	59.89	71.08	73.07	42.29	66.28	45.22	47.93
Merged-chr2-125625220-3	chr2	125625117	125625317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-104.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	164.75	163.49	158.02	182.2	189.41	192.22	154.46	212.1	182.33	201.85	276.37	119.04
Merged-chr5-143652036-3	chr5	143651964	143652164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163548, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	823.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	54.11	22.13	34.23	39.82	29.05	20.07	24.58	23.3	29.5	21.09	20.1	13.78
Merged-chr1-51529866-3	chr1	51529774	51529974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-51475.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	21.4	12.83	26.24	30.16	31.5	27.91	23.58	28.18	25.96	32.13	49.24	15.66
Merged-chr5-66150866-3	chr5	66150783	66150983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	95.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	22.61	37.23	15.97	16.49	18.82	41.08	24.25	12.06	24.78	48.7	28.14	19.42
Merged-chr7-7121486-3	chr7	7121385	7121585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172738)	promoter-TSS (NM_172738)	-9.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	69.45	64.39	85.57	98.94	105.55	96.89	81.38	159.28	118.01	80.84	147.23	104.32
Merged-chr10-128923536-1	chr10	128923436	128923636	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015740)	promoter-TSS (NM_015740)	-12.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	19.38	9.31	6.85	11.66	30.68	21.64	12.29	20.36	21.64	29.62	35.68	19.74
Merged-chr14-25769163-3	chr14	25769091	25769291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101433)	promoter-TSS (NM_001101433)	-335.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	39.98	23.39	21.11	36.6	24.55	23.2	14.95	27.7	18.29	25.11	25.63	15.98
Merged-chr16-36934958-3	chr16	36934818	36935018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-65.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	77.12	87.28	104.96	100.95	117.0	143.62	96.0	110.02	104.05	119.5	151.75	70.17
Merged-chr10-62543701-3	chr10	62543621	62543821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16276.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	213.2	185.88	219.63	202.31	247.1	336.78	229.53	293.22	247.04	242.52	352.74	186.71
Merged-chr4-122955541-3	chr4	122955432	122955632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5656.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	29.88	24.65	26.81	18.5	17.18	31.98	16.28	25.49	40.32	40.17	79.39	31.01
Merged-chr5-142929265-3	chr5	142929161	142929361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-22507.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	39.17	39.49	58.19	52.69	45.82	36.06	35.54	46.77	59.99	48.7	58.79	47.3
Merged-chr5-101765075-3	chr5	101764970	101765170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173370)	promoter-TSS (NM_173370)	-60.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	71.88	60.87	54.19	57.92	81.0	86.23	49.83	64.93	88.12	99.42	108.03	57.33
Merged-chr1-182909812-3	chr1	182909713	182909913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-44975.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	41.59	39.49	33.66	55.5	58.5	44.53	23.92	49.29	54.88	38.16	74.37	37.59
Merged-chr1-120080875-3	chr1	120080769	120080969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7089.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	41.99	27.17	31.38	27.75	37.23	42.96	29.9	43.09	56.45	54.73	52.76	36.03
Merged-chr3-28012376-3	chr3	28012267	28012467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	28196.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	94.89	87.28	110.67	108.19	85.09	106.93	81.71	124.74	97.75	93.89	125.12	67.98
Merged-chr11-5065759-3	chr11	5065659	5065859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	-432.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	23.02	20.63	27.38	11.26	24.55	30.42	16.94	23.83	30.29	13.56	35.17	14.1
Merged-chr1-136137266-3	chr1	136137200	136137400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	5910.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	69.05	78.48	113.52	80.44	110.46	102.54	94.34	114.39	103.06	86.86	139.19	59.21
Merged-chr8-84639429-5	chr8	84639323	84639523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007578, exon 47 of 47)	exon (NM_007578, exon 47 of 47)	23429.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	36.34	46.28	43.35	31.37	76.5	112.26	25.24	54.7	135.91	202.85	187.93	72.05
Merged-chr16-35902555-3	chr16	35902454	35902654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31172.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	71.88	85.02	74.73	53.89	92.05	120.41	67.43	65.55	87.72	87.37	99.99	44.17
Merged-chr13-24792557-3	chr13	24792457	24792657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9100.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	45.23	33.2	58.19	57.11	51.14	59.58	58.13	77.92	76.51	73.31	82.91	36.97
Merged-chr17-46646176-3	chr17	46646082	46646282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	-39.0	NM_001316742	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	79.14	81.5	74.16	61.13	74.46	113.83	44.18	81.76	107.39	128.54	94.47	60.15
Merged-chr11-62550023-3	chr11	62549930	62550130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	20.19	28.93	21.11	30.97	34.77	39.51	35.87	36.53	47.01	39.67	49.75	26.94
Merged-chr6-66896430-3	chr6	66896347	66896547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177557)	promoter-TSS (NM_001177557)	50.0	NM_001177556	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	54.51	54.33	33.66	53.89	75.28	55.82	84.7	77.13	65.89	62.76	90.45	46.36
Merged-chr19-7217691-3	chr19	7217595	7217795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-79.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	161.11	108.41	128.92	100.15	125.19	132.01	127.22	113.89	117.23	109.96	94.47	63.91
Merged-chr5-142920925-3	chr5	142920844	142921044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14190.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	81.16	78.98	96.41	82.85	106.78	119.16	80.72	93.11	140.63	138.58	184.91	101.5
Merged-chr9-66919780-3	chr9	66919703	66919903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-98.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	77.12	81.5	81.58	80.84	77.73	128.56	68.76	84.65	107.98	122.01	144.71	68.92
Merged-chr5-124715289-3	chr5	124715196	124715396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011596, intron 14 of 19)	intron (NM_011596, intron 14 of 19)	-9789.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	96.1	60.12	102.68	60.73	87.14	99.09	57.8	62.27	91.46	84.35	100.5	39.47
Merged-chr2-29649391-3	chr2	29649290	29649490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	29670.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	31.09	27.67	27.95	32.58	38.46	47.04	28.9	36.25	44.84	25.11	35.17	17.23
Merged-chr15-100041841-3	chr15	100041722	100041922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	3158.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	24.23	22.39	23.96	15.28	27.41	18.5	17.27	25.29	16.92	24.6	37.69	18.48
Merged-chr16-33756625-3	chr16	33756483	33756683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37454.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	16.15	19.37	25.1	17.7	18.41	23.83	14.95	27.14	22.62	25.11	34.17	21.3
Merged-chr9-44334556-3	chr9	44334442	44334642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010436)	promoter-TSS (NM_010436)	-173.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	114.68	116.96	116.94	87.28	123.96	161.49	61.78	77.61	179.97	159.17	147.23	82.39
Merged-chr13-37680526-3	chr13	37680441	37680641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-145497.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	35.94	25.91	18.25	4.02	31.5	67.73	42.52	21.36	41.5	21.09	24.62	15.04
Merged-chr11-79287683-3	chr11	79287592	79287792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32997.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	45.23	53.58	53.62	58.32	52.37	71.81	31.22	52.93	62.74	61.76	70.85	46.36
Merged-chr16-57549208-3	chr16	57549123	57549323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177871)	promoter-TSS (NM_001177871)	-19.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	76.32	57.35	68.45	59.93	67.09	91.56	33.88	58.15	72.77	96.4	96.98	46.99
Merged-chr19-29806010-3	chr19	29805899	29806099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	10.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	22.21	26.16	18.83	18.9	19.64	18.5	24.58	14.86	18.69	16.07	19.09	21.93
Merged-chr2-26472502-3	chr2	26472400	26472600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 18 of 33)	L4_C_Mam|LINE|RTE-X	-2381.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	62.18	59.61	56.48	62.34	81.0	57.07	47.5	68.38	82.41	74.81	92.46	54.82
Merged-chr3-60580947-3	chr3	60580841	60581041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	79762.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	30.69	25.91	37.08	30.57	26.59	29.79	16.61	39.06	36.98	31.63	39.7	22.24
Merged-chr6-123170396-3	chr6	123170296	123170496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-2627.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	31.9	28.67	54.76	41.02	47.05	40.14	36.54	38.1	45.43	66.78	50.75	27.88
Merged-chr14-73122730-3	chr14	73122656	73122856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19754.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	114.68	65.15	115.23	130.71	125.59	100.97	133.2	133.4	106.6	85.86	132.15	74.24
Merged-chr4-9669230-3	chr4	9669138	9669338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-76.0	NM_001177849	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	253.58	240.46	281.24	268.67	267.14	271.24	227.2	255.34	276.74	321.35	421.08	175.12
Merged-chrX-133869919-3	chrX	133869758	133869958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18850.0	NM_022322	64103.0	Mm.46221	NM_022322	ENSMUSG00000031250	Tnmd	1110017I01Rik|Bricd4|ChM1L|TeM	tenomodulin	protein-coding	26.65	37.23	29.09	49.87	26.18	31.36	42.52	47.52	42.88	40.67	55.78	27.25
Merged-chr11-23657929-3	chr11	23657831	23658031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-7743.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	28.27	35.72	49.63	50.68	60.96	55.5	59.13	73.63	63.53	46.19	85.92	39.16
Merged-chr11-75137271-3	chr11	75137168	75137368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	30884.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	90.05	97.34	116.37	107.79	104.73	162.74	103.31	104.92	153.42	133.06	158.28	75.18
Merged-chr2-38520108-3	chr2	38520022	38520222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	8246.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	36.75	36.47	31.38	40.62	35.59	45.78	50.49	51.67	42.68	24.6	41.2	29.45
Merged-chr8-123042408-3	chr8	123042315	123042515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037865)	promoter-TSS (NR_037865)	-131.0	NM_001081379	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	247.93	263.85	252.14	266.26	264.28	321.41	241.82	203.69	338.7	391.14	335.66	175.74
Merged-chr10-70195473-3	chr10	70195338	70195538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-9226.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	26.25	29.68	46.21	37.81	40.09	41.39	38.86	50.33	30.68	24.6	47.23	19.42
Merged-chr11-86750233-3	chr11	86750113	86750313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	7354.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	25.04	11.32	25.1	19.31	14.32	26.65	13.62	25.6	27.14	29.12	30.65	19.11
Merged-chr18-66475910-3	chr18	66475808	66476008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17304.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	62.59	76.97	52.48	18.5	78.14	142.05	76.73	62.13	114.28	112.97	135.17	51.38
Merged-chr11-69326191-3	chr11	69326088	69326288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-70.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	60.97	48.8	46.21	53.09	50.73	78.08	29.9	50.13	71.0	66.28	76.88	44.8
Merged-chr16-23982649-3	chr16	23982507	23982707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-1324.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	34.73	27.17	30.8	24.53	22.91	29.16	13.95	14.22	12.19	23.1	25.12	7.52
Merged-chr14-120306403-3	chr14	120306304	120306504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360376)	promoter-TSS (NM_001360376)	-48.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	62.18	46.03	67.88	68.37	58.91	76.83	46.17	95.13	73.17	62.26	94.47	37.28
Merged-chr10-95548673-3	chr10	95548561	95548761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	10660.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	52.49	49.3	66.17	56.71	54.41	53.93	29.56	76.71	57.43	29.62	44.22	31.95
Merged-chr17-21566998-3	chr17	21566885	21567085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	7.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	14.94	15.85	18.25	16.89	12.68	18.19	15.28	18.11	37.37	56.24	45.73	28.51
Merged-chr14-46788335-3	chr14	46788223	46788423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009919)	promoter-TSS (NM_009919)	34.0	NM_001355011	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	65.41	58.1	58.76	66.36	73.23	63.97	62.45	80.86	64.51	75.82	102.51	49.18
Merged-chr11-32644227-3	chr11	32644141	32644341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1686.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	70.26	41.25	90.7	75.21	49.09	74.32	44.51	70.32	90.08	66.78	115.07	44.48
Merged-chr17-23550516-3	chr17	23550419	23550619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126485)	promoter-TSS (NR_126485)	-280.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	21.8	31.94	23.96	34.99	34.77	34.18	25.91	28.6	22.23	37.16	39.7	21.62
Merged-chr3-84155798-3	chr3	84155701	84155901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029797)	promoter-TSS (NM_029797)	-15.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	125.98	121.99	106.1	148.41	159.55	228.28	141.84	204.7	148.7	126.53	230.14	95.86
Merged-chr11-70084788-3	chr11	70084698	70084898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7846.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	65.41	50.56	73.02	76.82	66.68	62.4	43.51	56.19	60.38	65.78	68.34	45.74
Merged-chr6-33867073-2	chr6	33866972	33867172	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-162376.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.65	3.77	4.56	5.63	22.91	36.69	22.59	27.81	24.78	30.13	21.1	12.22
Merged-chr8-122444541-3	chr8	122444436	122444636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015497)	TTS (NR_015497)	880.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	20.59	18.86	22.82	18.5	20.46	29.79	19.6	14.55	25.37	17.57	24.62	15.04
Merged-chr10-37257725-3	chr10	37257617	37257817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-118791.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	34.32	40.5	41.07	53.89	24.55	50.8	37.2	45.95	43.07	39.16	56.28	15.98
Merged-chr11-23306468-3	chr11	23306383	23306583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190401)	promoter-TSS (NM_001190401)	-412.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	166.36	151.92	164.86	174.15	164.87	205.7	117.92	182.55	211.05	242.01	325.61	125.31
Merged-chr2-130664338-3	chr2	130664331	130664531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029832, intron 1 of 8)	CpG	214.0	NM_029832	77006.0	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	45.63	51.31	58.19	65.96	50.32	64.6	47.83	33.67	56.25	50.71	79.89	37.91
Merged-chr7-135914441-3	chr7	135914343	135914543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198064.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	29.88	29.68	38.22	50.68	43.36	31.36	38.53	50.33	35.6	28.12	36.68	28.51
Merged-chr15-28374613-3	chr15	28374522	28374722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 52 of 78)	intron (NM_133365, intron 52 of 78)	170856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	162.33	168.02	126.64	116.24	236.05	275.32	153.8	184.6	228.16	249.04	262.3	119.35
Merged-chr16-8829887-3	chr16	8829790	8829990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-210.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	265.29	264.61	270.97	256.6	311.33	385.69	287.33	328.09	393.97	452.9	480.88	244.97
Merged-chr18-80390879-3	chr18	80390780	80390980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26626.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	17.77	30.69	40.5	33.78	14.73	13.48	26.24	18.06	11.41	18.58	22.61	14.72
Merged-chr4-141723445-3	chr4	141723316	141723516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017966)	promoter-TSS (NM_001017966)	3.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	59.76	50.31	58.76	40.62	73.64	88.11	43.85	51.31	85.56	85.36	65.32	43.86
Merged-chr10-77619819-3	chr10	77619719	77619919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2502.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	23.82	20.63	35.94	19.31	26.59	31.67	38.2	40.37	27.54	19.58	28.14	15.35
Merged-chr5-53594168-3	chr5	53594076	53594276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3690.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	39.57	33.45	25.1	20.11	50.73	58.64	31.56	40.26	65.5	48.7	63.31	36.34
Merged-chr14-102866646-3	chr14	102866535	102866735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	115997.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	31.09	21.38	38.79	53.89	40.09	46.1	42.19	73.29	46.03	26.61	66.83	39.47
Merged-chr18-9504323-3	chr18	9504218	9504418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54164.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	31.5	35.72	21.68	37.0	45.0	37.0	28.9	45.76	36.58	19.58	22.11	31.95
Merged-chr2-38536533-3	chr2	38536429	38536629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24653.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	27.86	18.36	38.22	26.14	32.32	47.35	31.56	39.34	42.88	41.67	51.25	27.88
Merged-chr1-161077457-1	chr1	161077357	161077557	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131030, intron 2 of 4)	ORR1A3|LTR|ERVL-MaLR	6690.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	7.27	2.52	2.85	6.44	4.91	1.57	3.99	2.97	16.33	6.53	22.61	12.22
Merged-chr6-15463599-3	chr6	15463494	15463694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-257067.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	14.54	26.91	29.66	32.58	30.27	31.04	13.62	30.73	34.22	28.12	35.68	24.12
Merged-chr2-117108297-3	chr2	117108199	117108399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12772.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	87.22	73.45	91.84	128.7	94.91	89.68	106.96	129.2	112.31	86.36	109.04	67.35
Merged-chr17-80207374-3	chr17	80207264	80207464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-59.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	164.75	157.71	140.9	135.14	161.19	181.56	122.9	153.93	196.69	209.88	207.53	129.69
Merged-chr11-75190526-3	chr11	75190433	75190633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-50.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	45.63	31.44	27.38	26.14	50.73	54.88	27.9	24.53	63.92	36.65	49.24	25.69
Merged-chr8-71371680-3	chr8	71371579	71371779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029865, exon 1 of 4)	exon (NM_029865, exon 1 of 4)	381.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	223.7	240.21	214.49	195.07	215.6	274.69	174.06	180.93	236.81	263.61	324.6	145.04
Merged-chr4-46138665-3	chr4	46138574	46138774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173033)	promoter-TSS (NM_173033)	35.0	NM_001355376	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	41.99	66.15	50.2	69.58	51.14	66.16	50.49	48.39	43.86	52.22	63.31	45.11
Merged-chr5-62858658-3	chr5	62858555	62858755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	44832.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	75.91	77.72	80.43	78.43	124.78	105.36	105.96	92.38	91.85	128.04	94.47	62.34
Merged-chr5-38220463-3	chr5	38220375	38220575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	-7.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	100.14	112.68	102.68	108.59	132.14	126.06	71.75	143.94	148.5	196.83	183.91	128.13
Merged-chr17-87571804-3	chr17	87571702	87571902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64177.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	37.15	60.37	50.77	36.2	30.27	52.37	19.6	35.75	43.66	39.67	50.75	31.64
Merged-chrM-4084-2	chrM	3982	4182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											44240.25	43862.7	52057.59	54990.76	40765.53	49973.47	46628.83	64141.57	0.0	0.0	0.0	0.0
Merged-chr3-98031329-3	chr3	98031232	98031432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17794.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	42.4	35.97	45.07	42.23	65.87	42.33	42.19	52.07	37.76	39.67	41.2	29.13
Merged-chr3-14869979-3	chr3	14869868	14870068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007606, intron 5 of 6)	intron (NM_007606, intron 5 of 6)	6430.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	26.25	27.92	44.5	46.66	43.77	34.81	21.59	43.12	64.71	55.23	94.97	43.54
Merged-chr3-116423617-3	chr3	116423510	116423710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001080818, exon 1 of 16)	5' UTR (NM_001080818, exon 1 of 16)	422.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	35.94	62.13	31.38	21.32	37.23	99.09	41.52	24.67	61.76	56.24	51.76	25.69
Merged-chr4-133690464-3	chr4	133690349	133690549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 11 of 19)	intron (NM_001080819, intron 11 of 19)	-17283.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	16.96	12.83	30.8	16.89	20.46	25.4	13.95	30.76	59.01	25.11	42.21	34.15
Merged-chr19-5724746-3	chr19	5724626	5724826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1591.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	103.78	98.1	99.26	91.7	119.05	142.36	92.01	88.77	98.15	138.58	123.61	65.16
Merged-chr1-191275815-3	chr1	191275704	191275904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	42314.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	72.68	58.35	95.27	84.46	137.46	176.86	121.91	130.4	126.86	153.64	139.19	80.82
Merged-chr13-60620775-3	chr13	60620672	60620872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	18561.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	85.2	57.35	90.13	54.7	102.68	182.81	94.67	85.99	81.23	72.81	74.87	54.2
Merged-chr16-20401802-3	chr16	20401683	20401883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	24611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	34.32	30.43	29.09	14.48	24.55	30.42	22.59	22.15	47.6	23.6	32.66	19.74
Merged-chr16-22547805-3	chr16	22547719	22547919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-15635.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	39.17	23.14	46.78	46.66	46.23	60.52	35.87	56.02	59.01	51.72	65.32	52.0
Merged-chr9-103241806-3	chr9	103241739	103241939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11553.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	23.02	16.1	28.52	27.75	38.46	13.8	23.25	31.63	21.83	8.03	37.18	17.23
Merged-chr5-129020068-3	chr5	129019951	129020151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-105.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	91.66	67.91	72.45	56.31	105.55	104.42	86.7	92.08	127.06	112.97	182.4	58.27
Merged-chr10-87830195-3	chr10	87830123	87830323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28042.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	45.23	21.63	45.64	43.04	63.41	71.81	64.77	71.38	54.09	55.73	71.86	36.34
Merged-chrX-169124009-3	chrX	169123901	169124101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	11123.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	31.09	23.64	35.37	44.24	52.77	42.02	58.13	56.05	48.58	45.19	54.77	19.42
Merged-chr1-72413465-3	chr1	72413378	72413578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106057.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	71.47	67.16	66.74	73.2	96.14	74.94	83.04	100.74	122.34	95.4	161.3	87.71
Merged-chr14-14640729-2	chr14	14640621	14640821	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62304.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	6.06	6.29	17.68	14.88	27.41	12.23	9.97	22.01	20.85	15.06	16.08	5.33
Merged-chr9-121332205-3	chr9	121332109	121332309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	34707.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	42.8	45.28	26.24	18.1	54.82	63.66	38.2	25.32	36.98	35.15	33.16	19.74
Merged-chr11-68864890-3	chr11	68864775	68864975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11744.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	20.59	19.37	44.5	34.19	43.77	46.72	29.23	43.37	64.32	58.75	57.28	35.09
Merged-chr11-64978956-3	chr11	64978860	64979060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	-75.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	191.0	164.5	174.56	141.57	198.82	185.64	129.55	198.9	227.76	209.38	253.25	101.81
Merged-chr11-51833637-3	chr11	51833537	51833737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 5 of 12)	MIRb|SINE|MIR	23844.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	67.43	72.69	45.07	23.33	37.23	95.64	29.56	17.55	81.23	93.39	90.95	30.07
Merged-chr10-34206599-3	chr10	34206501	34206701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	950.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	37.15	43.01	37.65	38.61	50.73	75.26	46.17	58.29	62.35	88.87	77.88	42.92
Merged-chr17-73928190-3	chr17	73928076	73928276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 6 of 35)	B1F1|SINE|Alu	22020.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	26.25	19.62	37.08	43.44	39.68	43.27	26.57	38.22	33.44	34.14	42.71	13.78
Merged-chr4-53231197-3	chr4	53231098	53231298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14998.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	17.77	20.63	28.52	23.33	32.73	42.02	25.58	44.1	32.85	19.58	56.78	28.19
Merged-chr16-16526895-3	chr16	16526814	16527014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	497.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	50.47	39.99	54.19	56.31	36.41	47.35	40.52	62.13	57.63	63.27	52.76	17.54
Merged-chr18-68059232-3	chr18	68059143	68059343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126070.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	63.8	54.33	34.8	72.4	65.87	81.22	72.75	85.21	48.98	56.74	53.77	34.46
Merged-chr18-36328823-3	chr18	36328726	36328926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19798.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	76.32	57.1	52.48	49.07	64.64	73.38	68.43	74.3	58.42	53.22	73.86	41.98
Merged-chr2-166204316-3	chr2	166204191	166204391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48608.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	33.92	42.76	49.06	49.47	41.73	44.53	52.15	53.44	59.79	40.67	80.9	53.26
Merged-chr4-123952220-3	chr4	123952118	123952318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34785.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	29.88	20.37	30.23	16.49	35.59	38.57	23.25	26.19	34.62	34.14	41.71	17.23
Merged-chr8-90876539-3	chr8	90876433	90876633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	47698.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	135.27	125.01	146.04	143.59	103.5	126.06	117.92	136.43	108.38	78.83	117.08	72.36
Merged-chr12-91591016-3	chr12	91590927	91591127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175335)	promoter-TSS (NM_175335)	-540.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	41.19	37.73	47.35	34.99	55.64	50.8	45.51	62.52	62.74	58.75	73.36	35.09
Merged-chr4-134704391-3	chr4	134704292	134704492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-102.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	170.4	167.27	181.98	142.38	192.69	199.12	119.25	158.83	227.96	187.29	215.57	118.1
Merged-chr6-32460594-3	chr6	32460482	32460682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-50559.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	14.54	28.17	9.13	23.33	31.5	56.44	26.57	37.18	26.95	33.64	42.21	18.17
Merged-chr12-111160162-3	chr12	111160056	111160256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130987, exon 4 of 4)	non-coding (NR_130987, exon 4 of 4)	-6214.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	92.87	125.51	139.19	105.38	111.28	183.13	98.32	97.21	157.55	139.59	190.94	66.1
Merged-chr8-105825721-3	chr8	105825628	105825828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145824, intron 2 of 13)	intron (NM_145824, intron 2 of 13)	1622.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	23.82	30.94	29.09	6.44	17.59	31.36	9.3	20.72	39.93	24.6	27.13	19.42
Merged-chr15-58145832-2	chr15	58145742	58145942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029734, intron 1 of 5)	(TCCCC)n|Simple_repeat|Simple_repeat	4476.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	20.19	24.15	21.68	18.9	0.82	0.31	0.66	0.36	20.06	20.59	24.62	20.68
Merged-chr2-18676910-5	chr2	18676817	18677017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007552)	promoter-TSS (NM_007552)	-101.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	19.79	24.4	31.38	27.75	24.55	30.42	23.92	29.13	46.03	37.66	50.75	22.24
Merged-chr9-122117291-3	chr9	122117177	122117377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164572)	promoter-TSS (NM_001164572)	11.0	NM_001357774	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	72.28	44.02	38.22	55.5	46.64	47.04	38.2	60.03	73.17	80.34	89.94	41.04
Merged-chr4-133465314-3	chr4	133465211	133465411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-14822.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	36.75	27.17	32.52	33.78	45.41	50.8	24.58	36.0	35.8	24.1	23.11	17.86
Merged-chr17-84188054-3	chr17	84187954	84188154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-107.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	152.23	165.0	163.72	122.27	173.46	165.57	96.99	120.03	179.18	180.26	193.46	98.05
Merged-chr4-53353655-3	chr4	53353550	53353750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83418.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	138.91	177.33	173.99	221.21	209.87	218.25	190.33	239.19	235.24	207.37	246.22	159.77
Merged-chr15-77875003-3	chr15	77874905	77875105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32830.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	20.19	21.88	43.93	26.55	37.64	41.71	18.27	36.06	61.17	59.25	69.85	36.65
Merged-chr4-152283378-3	chr4	152283272	152283472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178406, exon 6 of 6)	exon (NM_178406, exon 6 of 6)	8290.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	25.04	21.63	27.95	22.93	30.27	26.03	19.93	33.73	36.39	33.64	34.67	26.0
Merged-chr7-105400210-3	chr7	105400110	105400310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242363)	promoter-TSS (NM_001242363)	-156.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	303.25	317.68	290.36	370.43	340.37	396.98	349.78	376.52	371.74	419.26	502.99	248.42
Merged-chr3-87017917-3	chr3	87017814	87018014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18574.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	52.9	59.86	87.85	81.24	79.37	64.28	59.46	74.61	78.09	68.79	85.92	43.86
Merged-chr11-117809680-3	chr11	117809593	117809793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009304)	promoter-TSS (NM_009304)	26.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	24.23	14.34	17.68	20.11	14.73	18.5	16.94	20.36	22.03	30.13	40.2	13.78
Merged-chr11-95259288-3	chr11	95259191	95259391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2238.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	48.46	45.53	46.21	52.69	38.05	45.15	29.56	38.94	42.09	57.74	44.72	32.58
Merged-chr10-62501123-3	chr10	62501015	62501215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	6642.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	24.63	34.21	46.21	16.09	26.59	49.54	25.91	19.29	58.22	31.13	34.17	19.42
Merged-chr1-171123096-3	chr1	171123021	171123221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081275, exon 2 of 6)	5' UTR (NM_001081275, exon 2 of 6)	1460.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	22.61	35.47	20.54	30.57	52.37	70.87	32.88	42.31	70.81	28.62	44.22	37.28
Merged-chr16-36828370-3	chr16	36828273	36828473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113401)	promoter-TSS (NM_001113401)	-27.0	NM_177128	320299.0	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	38.36	56.34	45.07	72.8	71.18	68.36	51.82	80.83	55.47	57.24	78.39	38.53
Merged-chr18-4314096-3	chr18	4314002	4314202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38851.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	172.82	156.95	145.47	154.85	185.32	201.0	127.22	153.76	176.23	171.72	198.98	113.4
Merged-chr8-46931404-3	chr8	46931306	46931506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3G|LINE|L1	-55481.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	59.36	39.74	59.9	76.82	58.09	72.12	60.79	70.4	60.78	50.71	65.83	39.78
Merged-chrUn_JH584304-39324-1	chrUn_JH584304	39224	39424	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20365.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	39.53	64.77	68.34	31.64
Merged-chr6-50305123-3	chr6	50305014	50305214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-43345.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	162.73	144.63	156.31	140.37	164.46	192.85	156.12	144.51	209.67	175.74	199.49	119.98
Merged-chr14-26636889-3	chr14	26636819	26637019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1215.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	18.98	13.08	18.25	19.31	30.68	19.76	11.29	16.85	22.82	27.62	23.11	14.72
Merged-chr7-141456089-3	chr7	141455970	141456170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025802, intron 1 of 7)	intron (NM_025802, intron 1 of 7)	882.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	28.67	28.93	35.94	33.78	39.27	34.49	41.19	40.6	36.39	58.75	62.31	36.03
Merged-chr3-96697110-3	chr3	96697008	96697208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018812)	promoter-TSS (NM_018812)	32.0	NM_018812	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	62.99	49.8	59.9	52.69	67.91	76.51	43.85	58.85	52.91	70.8	92.96	31.33
Merged-chr2-25365646-3	chr2	25365550	25365750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	13.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	37.15	27.92	31.38	20.11	35.59	41.08	22.92	26.19	37.57	47.2	46.73	44.48
Merged-chr2-180274113-2	chr2	180274000	180274200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-635.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	20.59	15.34	25.67	16.49	21.27	23.2	12.29	25.51	20.26	11.05	17.59	12.22
Merged-chr10-117721628-3	chr10	117721507	117721707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10849.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	13.33	27.17	20.54	14.48	33.14	37.32	15.94	26.3	57.63	54.23	34.17	22.24
Merged-chr6-31169555-3	chr6	31169444	31169644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48930.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	38.76	56.59	59.9	17.29	43.77	100.03	33.88	28.82	54.88	46.7	45.73	15.35
Merged-chr3-89418436-3	chr3	89418342	89418542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	-109.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	190.19	199.96	193.38	233.28	218.05	280.96	170.07	207.0	241.34	249.04	285.41	155.07
Merged-chr12-103341370-3	chr12	103341251	103341451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14650.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	161.92	122.49	190.53	143.99	163.23	180.3	124.23	139.6	177.61	164.69	230.14	106.51
Merged-chr17-50190531-3	chr17	50190431	50190631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-34.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	55.72	28.93	59.33	48.26	55.64	52.99	39.2	66.36	69.63	54.23	87.93	43.54
Merged-chr8-128491388-3	chr8	128491283	128491483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132142.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	109.43	74.2	97.55	101.76	69.96	75.88	76.07	98.1	75.13	60.75	82.91	52.63
Merged-chr14-47472545-3	chr14	47472435	47472635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030236)	promoter-TSS (NM_030236)	-26.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	111.85	102.12	118.08	96.93	111.28	106.3	75.73	107.66	161.87	108.96	144.21	94.61
Merged-chrX-106135066-3	chrX	106134969	106135169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	-8206.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	57.34	49.8	74.16	69.98	71.59	67.73	75.07	68.69	55.47	62.76	68.34	47.62
Merged-chr3-142395705-3	chr3	142395613	142395813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190855)	promoter-TSS (NM_001190855)	-17.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	183.32	218.58	182.55	183.0	191.46	264.03	144.16	192.37	298.57	232.98	297.97	140.03
Merged-chr2-160667498-3	chr2	160667418	160667618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009408, intron 2 of 20)	MLT1F|LTR|ERVL-MaLR	21621.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	61.38	54.83	67.31	77.22	76.91	63.66	55.14	90.36	58.02	45.69	46.73	57.33
Merged-chr6-113326800-3	chr6	113326694	113326894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-182.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	254.8	208.01	251.57	250.57	263.05	283.16	189.34	249.25	269.66	313.31	317.57	181.38
Merged-chr1-36068296-3	chr1	36068237	36068437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015818)	promoter-TSS (NM_015818)	-63.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	134.46	128.78	148.32	121.87	152.19	161.18	164.42	160.37	143.58	139.08	186.42	74.87
Merged-chr1-51520476-3	chr1	51520369	51520569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-42070.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	24.23	24.65	24.53	36.2	22.09	23.52	18.93	26.22	25.57	21.59	32.16	17.23
Merged-chr10-128780395-3	chr10	128780348	128780548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10462.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	39.57	29.43	33.09	30.57	62.59	46.41	48.5	80.19	66.87	65.78	65.32	28.19
Merged-chr9-24542096-3	chr9	24541995	24542195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-38955.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	331.11	359.18	330.86	369.22	247.92	169.33	307.59	191.8	195.11	203.85	169.84	256.57
Merged-chr13-58516523-3	chr13	58516409	58516609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	94368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	73.49	77.97	100.4	70.38	59.73	69.93	45.51	63.11	83.2	85.36	102.0	47.93
Merged-chr16-24199966-3	chr16	24199859	24200059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117269.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	19.79	14.09	28.52	6.03	31.91	34.18	23.58	26.16	33.63	20.08	37.18	5.95
Merged-chr11-103412723-3	chr11	103412561	103412761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	3.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	69.45	67.91	62.75	54.7	62.18	70.55	56.47	49.85	79.46	65.78	74.37	47.3
Merged-chr12-102878523-3	chr12	102878423	102878623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172806)	promoter-TSS (NM_172806)	-117.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	111.45	96.59	113.52	94.11	109.64	116.65	81.71	113.27	154.99	148.12	140.7	72.05
Merged-chr16-90677436-3	chr16	90677393	90677593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49878.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	67.03	67.16	67.88	55.1	86.32	73.69	68.43	101.02	66.48	62.76	87.43	36.03
Merged-chr11-115403897-3	chr11	115403791	115403991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347645, exon 1 of 6)	exon (NM_001347645, exon 1 of 6)	139.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	22.21	14.59	33.66	17.29	15.14	25.71	21.26	16.99	14.95	17.57	14.57	14.1
Merged-chr19-16086751-3	chr19	16086644	16086844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-46087.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	35.94	29.93	33.09	23.73	40.5	46.72	22.92	21.45	61.17	48.2	46.23	23.49
Merged-chr19-12461093-3	chr19	12461000	12461200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010821, exon 2 of 2)	5' UTR (NM_010821, exon 2 of 2)	321.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	42.8	46.53	58.76	53.09	49.09	60.52	57.8	47.52	54.09	52.22	57.28	31.64
Merged-chr9-86467183-3	chr9	86467073	86467273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177208)	promoter-TSS (NM_177208)	19.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	71.07	66.65	70.74	73.6	119.05	104.11	65.77	104.92	92.05	86.36	125.62	69.86
Merged-chr16-18626661-3	chr16	18626547	18626747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213614, intron 2 of 11)	CpG	3291.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	16.15	35.47	27.95	33.78	36.41	44.84	22.59	35.75	23.6	18.08	32.66	16.6
Merged-chr13-59870312-3	chr13	59870200	59870400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-47153.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	80.36	59.86	103.82	81.65	108.0	75.88	75.73	64.12	100.11	116.49	128.13	85.84
Merged-chr6-124965447-4	chr6	124965336	124965536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164089, exon 1 of 8)	5' UTR (NM_001164089, exon 1 of 8)	102.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	54.11	72.69	46.21	63.55	58.5	81.22	76.4	59.05	70.22	78.33	76.88	65.47
Merged-chr17-35241861-4	chr17	35241824	35242024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	178.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	33.92	41.5	33.66	34.99	33.96	55.5	37.54	27.5	64.32	75.82	43.21	46.68
Merged-chr19-10023842-3	chr19	10023728	10023928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5634.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	31.09	21.63	64.46	32.18	38.05	27.28	20.26	32.66	28.91	27.11	37.18	18.8
Merged-chr3-142590620-3	chr3	142590459	142590659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4288.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	42.8	50.56	55.9	45.85	70.37	80.27	65.44	67.57	58.81	48.7	64.32	34.77
Merged-chr1-144319602-3	chr1	144319522	144319722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70518.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	89.24	53.07	73.02	71.59	117.0	109.12	100.65	141.81	87.33	87.37	107.03	71.42
Merged-chr2-3961597-3	chr2	3961491	3961691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-56092.0	NM_001347086	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	20.19	17.86	38.79	41.02	42.96	31.67	32.88	42.39	33.63	31.63	45.73	40.1
Merged-chr2-102877707-3	chr2	102877599	102877799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23966.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	22.21	26.16	38.22	12.47	36.41	48.29	26.24	44.52	31.47	36.65	37.18	26.0
Merged-chr2-45113653-3	chr2	45113504	45113704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-325.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.25	16.6	12.55	9.65	9.0	22.89	14.95	6.7	22.42	24.6	29.65	13.16
Merged-chr5-117891769-3	chr5	117891691	117891891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24952.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	46.84	39.49	70.74	52.69	57.27	55.82	66.77	58.04	49.17	39.16	34.17	26.31
Merged-chr13-60892470-3	chr13	60892381	60892581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	4966.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	48.86	34.71	59.9	78.03	60.96	73.69	32.22	44.94	61.56	56.74	79.89	40.1
Merged-chr2-34754308-3	chr2	34754213	34754413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151469, exon 2 of 27)	non-coding (NR_151469, exon 2 of 27)	919.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	46.84	46.28	30.8	39.82	40.91	58.32	36.21	23.07	42.29	49.21	28.14	24.43
Merged-chr9-64089253-3	chr9	64089155	64089355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8494.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	29.07	31.94	38.79	41.43	42.14	46.41	39.53	50.83	39.34	51.72	72.86	36.97
Merged-chr12-95749295-1	chr12	95749195	95749395	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	57069.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	7.27	13.58	5.13	13.67	20.05	5.33	13.62	16.29	13.77	17.07	9.04	2.82
Merged-chr17-56627272-1	chr17	56627172	56627372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	225.0	NM_001357897	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	29.07	19.87	20.54	38.21	27.0	37.0	17.61	26.69	32.45	28.62	32.16	19.11
Merged-chr5-120812627-3	chr5	120812534	120812734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003507)	promoter-TSS (NR_003507)	-1.0	NR_003507	23961.0	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	16.96	30.94	30.8	24.94	44.59	46.41	11.96	35.86	43.86	33.14	37.18	28.51
Merged-chr13-34652637-3	chr13	34652537	34652737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	44.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	67.84	76.97	55.9	81.65	69.14	68.36	56.14	69.25	30.09	55.23	63.82	33.52
Merged-chr10-88336563-3	chr10	88336474	88336674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	MER31A|LTR|ERV1	20501.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	57.34	45.02	70.17	55.5	61.37	61.15	84.04	70.07	84.58	92.39	92.96	64.85
Merged-chr5-120116452-3	chr5	120116366	120116566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028762)	promoter-TSS (NM_028762)	-47.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	56.13	43.26	34.23	28.15	61.77	59.27	19.93	38.83	80.64	62.26	75.87	42.92
Merged-chr1-180725982-3	chr1	180725894	180726094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-49.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	71.88	51.56	69.6	43.84	54.82	74.94	44.18	68.41	71.99	80.84	105.02	48.87
Merged-chr2-153198719-3	chr2	153198618	153198818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26723.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	137.29	113.94	146.04	88.08	121.09	151.14	127.55	113.22	165.22	145.11	145.22	98.99
Merged-chr11-77442867-3	chr11	77442805	77443005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-21008.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	73.49	61.12	71.31	94.92	72.41	89.37	104.97	87.56	106.21	122.51	130.14	50.75
Merged-chr9-32475196-3	chr9	32475099	32475299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	66253.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	81.16	68.92	99.26	104.97	78.14	69.93	61.78	100.46	85.17	62.76	122.61	56.7
Merged-chr7-141048422-3	chr7	141048325	141048525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12849.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	32.3	23.64	25.67	35.39	15.96	42.02	14.62	36.95	33.04	50.71	41.71	18.48
Merged-chr1-172312343-3	chr1	172312248	172312448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-19.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	82.78	89.04	92.41	69.58	83.05	129.19	80.39	79.71	87.33	71.8	96.98	46.05
Merged-chr12-31949474-3	chr12	31949321	31949521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177993, intron 1 of 8)	CpG	824.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	85.6	124.0	134.63	132.73	136.23	123.86	124.56	134.8	148.7	136.07	140.19	87.4
Merged-chr1-36691462-3	chr1	36691356	36691556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-31.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	117.91	157.71	146.61	135.94	144.82	206.02	111.94	138.03	166.0	192.81	201.5	116.85
Merged-chr11-113101825-2	chr11	113101737	113101937	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100001.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	0.0	0.0	22.91	31.98	13.29	21.11	71.4	47.7	110.55	37.59
Merged-chr15-81872396-3	chr15	81872324	81872524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-39.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	73.09	60.62	49.63	39.82	69.14	63.97	21.59	40.79	66.28	73.81	61.81	55.45
Merged-chr8-60983822-3	chr8	60983725	60983925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	-514.0	NM_173874	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	40.38	22.89	36.51	37.0	38.46	52.68	39.53	52.57	49.96	65.27	62.81	46.36
Merged-chr9-103108599-1	chr9	103108499	103108699	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3475.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.0	1.14	0.8	0.82	0.0	0.0	0.0	31.86	24.1	24.12	21.3
Merged-chr2-158146390-3	chr2	158146286	158146486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	6.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	81.16	95.33	96.41	82.45	58.91	112.57	80.05	71.83	117.62	79.33	136.68	54.2
Merged-chr13-5615064-3	chr13	5614972	5615172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243020.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	66.22	48.29	58.19	70.38	106.37	92.82	80.39	112.49	98.74	113.98	114.06	49.18
Merged-chr13-34163019-3	chr13	34162913	34163113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101430)	promoter-TSS (NM_001101430)	49.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	66.22	56.09	88.99	49.07	78.14	91.56	64.77	65.22	88.71	122.51	109.54	82.7
Merged-chr3-40531043-3	chr3	40530927	40531127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8115.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	18.17	16.1	19.4	23.33	13.91	20.07	19.93	19.09	50.94	62.76	58.79	31.64
Merged-chrX-155246763-3	chrX	155246657	155246857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15686.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	34.73	24.65	23.39	40.22	34.36	29.48	41.85	54.73	50.55	37.66	63.31	40.1
Merged-chr3-31061470-3	chr3	31061375	31061575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22509.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	96.51	83.26	112.95	65.96	115.78	129.19	93.01	93.81	105.03	86.36	105.52	59.52
Merged-chr19-6277847-3	chr19	6277731	6277931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	935.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	70.66	46.28	58.19	26.14	39.27	92.82	49.49	32.8	70.02	64.77	67.84	27.57
Merged-chr8-70769552-3	chr8	70769453	70769653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008841, intron 13 of 15)	CpG	-2890.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	38.76	34.46	41.07	41.43	47.87	70.55	16.28	29.58	76.71	76.32	54.27	35.4
Merged-chr7-89445347-1	chr7	89445247	89445447	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	19041.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	5.65	3.52	10.84	6.44	27.0	30.1	34.88	27.5	3.15	2.51	2.51	6.27
Merged-chr14-102907707-3	chr14	102907609	102907809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	74923.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	17.36	25.15	26.81	27.75	32.73	23.2	24.58	31.79	35.8	21.59	36.68	28.19
Merged-chr8-25980389-3	chr8	25980251	25980451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029037)	TTS (NM_029037)	-3607.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	76.32	80.99	72.45	70.38	81.0	102.85	58.13	66.62	94.61	75.32	85.92	55.76
Merged-chr12-87147126-2	chr12	87147034	87147234	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-31.0	NM_001252555	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	25.04	23.39	18.25	22.52	28.64	22.58	12.95	25.82	33.24	24.6	44.72	33.21
Merged-chr17-10320263-1	chr17	10320163	10320363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	344.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	40.78	52.32	44.5	43.84	40.09	66.48	45.18	48.45	77.3	61.26	62.81	41.04
Merged-chr9-44767802-3	chr9	44767688	44767888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145985)	promoter-TSS (NM_145985)	20.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	41.19	44.02	35.94	39.42	36.41	36.06	31.56	25.57	39.93	58.24	41.2	36.03
Merged-chr12-71015362-1	chr12	71015262	71015462	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	461.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	31.09	39.49	29.66	21.32	34.36	29.48	25.58	32.64	45.43	51.21	47.23	31.01
Merged-chr2-3658036-3	chr2	3657941	3658141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55417.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	53.3	59.61	78.72	100.15	92.05	66.16	61.45	103.68	91.85	80.34	114.06	63.59
Merged-chr4-153817472-1	chr4	153817372	153817572	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133004.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	5.65	4.02	3.42	2.41	17.18	12.86	13.29	13.71	0.0	0.0	0.5	1.25
Merged-chr3-94838266-3	chr3	94838165	94838365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	CpG	698.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	55.72	55.84	54.19	52.29	46.64	76.2	40.19	46.96	76.31	101.43	95.97	52.63
Merged-chr9-35634039-3	chr9	35633960	35634160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14142.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	27.46	24.65	26.24	36.2	24.96	19.13	17.61	26.16	64.12	45.69	64.82	29.76
Merged-chr7-25787116-3	chr7	25787012	25787212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 2 of 19)	MIR|SINE|MIR	1621.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	39.98	34.46	37.08	24.94	38.46	43.27	33.88	34.65	53.89	40.67	45.22	18.48
Merged-chr1-55237157-3	chr1	55237073	55237273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-4.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	121.54	126.77	136.91	150.02	150.14	182.19	86.36	167.16	198.65	157.16	260.29	106.2
Merged-chr14-121997021-3	chr14	121996926	121997126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-31833.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	37.55	26.41	51.34	85.27	62.18	57.07	70.75	118.82	62.74	56.24	92.96	41.04
Merged-chr3-20027527-3	chr3	20027423	20027623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	7787.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	132.85	114.19	177.98	177.77	128.05	146.44	166.42	162.37	114.47	129.04	156.27	88.34
Merged-chr10-78015656-3	chr10	78015544	78015744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5837.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	24.63	18.61	35.94	13.27	43.77	80.27	27.57	38.22	35.99	41.67	37.18	37.28
Merged-chr7-105399162-3	chr7	105399067	105399267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242363, intron 1 of 12)	intron (NM_001242363, intron 1 of 12)	887.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	87.62	67.41	98.69	86.88	83.05	90.94	71.42	100.04	116.05	85.86	85.92	69.23
Merged-chr16-84621553-3	chr16	84621427	84621627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58262.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	107.41	123.75	119.8	81.65	105.96	149.26	61.78	75.2	223.24	207.87	151.25	78.63
Merged-chr10-117861072-3	chr10	117860972	117861172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15098.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	136.48	122.49	176.84	163.7	167.73	198.81	100.32	182.69	200.03	195.32	251.24	107.45
Merged-chr18-60795307-3	chr18	60795208	60795408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8541.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	35.13	27.17	30.8	38.61	45.82	31.04	29.9	38.64	71.99	62.76	82.91	48.87
Merged-chr7-129574679-3	chr7	129574589	129574789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17174.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	83.18	57.35	73.59	92.91	68.32	63.03	82.05	109.91	82.61	66.78	111.05	58.58
Merged-chr17-8902196-3	chr17	8902095	8902295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	ORR1D2|LTR|ERVL-MaLR	52210.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	26.25	22.89	51.91	42.23	44.59	46.72	43.51	71.94	59.2	48.7	84.42	41.04
Merged-chr13-60644793-3	chr13	60644691	60644891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	42580.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	72.28	40.75	56.48	50.68	89.59	70.24	48.83	81.84	54.48	68.29	73.36	46.99
Merged-chr19-36932819-3	chr19	36932718	36932918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	6739.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	50.07	52.57	46.78	86.47	31.5	48.92	34.88	59.66	72.58	43.68	108.54	38.85
Merged-chr9-94665417-3	chr9	94665323	94665523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4469.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	26.25	23.14	43.35	39.01	45.82	20.07	34.21	41.52	38.35	39.16	46.23	17.86
Merged-chr2-181520406-3	chr2	181520308	181520508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-77.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	164.75	146.89	157.45	133.13	182.46	195.36	153.8	162.76	175.05	168.21	209.54	111.84
Merged-chr1-135726131-3	chr1	135726033	135726233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-3034.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	61.78	65.65	43.35	31.37	70.77	72.75	36.21	54.31	85.17	54.73	107.53	56.07
Merged-chr11-20741833-5	chr11	20741681	20741881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-225.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	66.22	60.87	50.77	45.05	50.73	88.11	52.15	37.23	102.67	98.41	91.95	60.15
Merged-chr8-119840600-3	chr8	119840494	119840694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-15.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	155.87	125.01	159.16	135.14	144.82	189.71	105.96	116.24	201.41	176.74	227.12	108.39
Merged-chr11-70497891-3	chr11	70497782	70497982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7392.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	23.42	17.36	28.52	32.18	52.37	53.62	37.54	42.65	43.47	28.62	60.8	25.69
Merged-chr3-138489553-3	chr3	138489468	138489668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175224)	promoter-TSS (NM_175224)	-186.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	144.96	141.86	171.14	111.81	155.05	173.72	123.24	138.76	223.24	205.86	258.28	114.03
Merged-chr5-36562975-1	chr5	36562875	36563075	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19422.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	17.36	10.31	22.25	24.94	36.82	32.3	18.6	21.56	15.14	32.64	25.63	19.74
Merged-chr17-33951493-3	chr17	33951361	33951561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	27.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	54.11	34.96	47.35	38.21	56.87	49.86	49.16	49.57	32.26	39.67	40.2	31.64
Merged-chr5-135990793-3	chr5	135990680	135990880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4020.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	33.52	34.71	50.2	52.29	34.36	47.98	38.2	43.6	55.27	36.65	40.7	33.21
Merged-chr9-26999627-3	chr9	26999545	26999745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	-32.0	NM_144543	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	110.24	90.55	101.54	125.49	126.82	140.79	117.26	167.61	158.53	116.99	216.07	80.51
Merged-chr15-76380402-3	chr15	76380309	76380509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175457)	promoter-TSS (NM_175457)	-104.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	209.57	212.04	213.35	207.13	235.23	290.05	188.67	214.35	241.93	253.56	314.05	151.31
Merged-chr14-76504443-3	chr14	76504333	76504533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-77.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	55.72	41.25	34.8	62.74	52.37	74.0	40.86	70.57	55.86	52.72	63.82	40.72
Merged-chr9-111271733-3	chr9	111271641	111271841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	-104.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	381.99	377.54	416.43	392.14	377.19	499.21	327.52	414.17	455.73	499.09	573.84	326.74
Merged-chr1-161035078-3	chr1	161034985	161035185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	169.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	188.17	196.95	126.64	185.82	123.14	189.71	114.27	134.47	184.49	185.78	204.51	106.82
Merged-chr17-50491660-3	chr17	50491564	50491764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER105|DNA|DNA	-17883.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	29.48	31.69	16.54	16.09	15.96	47.04	24.91	22.93	42.88	28.12	24.12	14.1
Merged-chr2-73312645-3	chr2	73312517	73312717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	-25.0	NM_025854	66935.0	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	173.63	150.41	160.3	135.94	127.64	199.12	128.88	110.64	172.89	127.53	162.3	85.52
Merged-chr19-5810484-3	chr19	5810383	5810583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CTTG)n|Simple_repeat|Simple_repeat	-7811.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	132.04	114.95	135.77	106.99	122.73	131.39	112.27	131.05	132.17	122.51	106.53	75.81
Merged-chr12-102437706-3	chr12	102437608	102437808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	B1_Mur2|SINE|Alu	2105.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	17.77	22.39	21.11	18.5	18.41	25.09	19.6	20.52	34.81	31.63	26.63	16.6
Merged-chr4-63541270-3	chr4	63541170	63541370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3495.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	35.53	31.19	30.8	28.15	31.5	43.27	28.23	35.69	28.72	27.11	31.66	24.75
Merged-chr5-74793702-1	chr5	74793602	74793802	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90799.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.51	0.0	0.0	14.32	14.11	18.27	9.62	0.2	0.0	0.0	0.0
Merged-chr17-56040304-3	chr17	56040214	56040414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-102.0	NM_013733	27221.0	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	142.54	87.28	132.35	97.33	113.73	146.44	69.09	90.0	147.32	121.51	121.1	62.65
Merged-chr3-88503478-5	chr3	88503376	88503576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111102)	promoter-TSS (NM_001111102)	-124.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	16.56	12.07	7.42	12.47	29.05	18.5	18.27	13.71	14.16	37.16	16.08	16.92
Merged-chr2-180040535-3	chr2	180040427	180040627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011969, intron 1 of 6)	intron (NM_011969, intron 1 of 6)	1937.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	37.55	27.42	36.51	25.74	37.23	69.3	37.87	44.13	41.5	51.72	57.79	23.49
Merged-chr18-9552653-4	chr18	9552534	9552734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	66835.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	8.48	19.37	21.11	39.82	26.18	17.87	38.86	13.46	33.83	29.62	29.14	22.56
Merged-chr10-26799844-3	chr10	26799806	26800006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	27394.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	134.06	133.81	173.99	171.34	182.05	180.93	208.27	184.09	155.58	189.8	167.83	114.34
Merged-chr9-22085476-3	chr9	22085372	22085572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253898)	promoter-TSS (NM_001253898)	-45.0	NM_001253897	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	109.43	90.3	131.21	97.33	144.82	132.01	85.04	149.3	164.04	156.66	185.42	108.39
Merged-chr5-148489500-3	chr5	148489400	148489600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	62173.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	29.88	30.18	27.38	20.91	38.86	40.76	22.92	33.64	35.6	26.61	67.33	21.3
Merged-chr3-107696641-3	chr3	107696554	107696754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357112)	promoter-TSS (NM_001357112)	-94.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	130.83	118.47	127.78	150.42	144.0	179.68	114.93	169.6	205.34	154.15	225.11	150.68
Merged-chr13-113844099-3	chr13	113843992	113844192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	49584.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	40.78	29.18	66.74	52.29	29.05	30.73	25.91	49.68	42.48	31.13	81.4	35.4
Merged-chr5-109557163-3	chr5	109557052	109557252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016715, exon 3 of 8)	exon (NM_016715, exon 3 of 8)	1841.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	102.97	86.27	103.82	88.89	85.09	98.78	77.4	82.09	139.26	136.07	178.38	82.39
Merged-chr1-131199394-3	chr1	131199290	131199490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	795.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	34.73	16.85	35.37	44.24	38.05	39.2	27.57	43.15	37.17	34.14	54.27	26.0
Merged-chr11-3964944-3	chr11	3964841	3965041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	966.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	31.09	19.37	35.94	29.36	31.09	24.15	31.89	36.65	28.32	26.61	27.13	21.62
Merged-chr12-26438930-2	chr12	26438810	26439010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	17542.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	28.67	33.2	33.09	22.52	28.23	40.76	22.92	32.61	0.98	3.01	2.01	0.0
Merged-chr17-48263998-5	chr17	48263839	48264039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172623)	promoter-TSS (NM_172623)	-356.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	45.23	60.62	26.24	24.94	57.68	74.63	36.21	27.87	110.74	103.94	70.85	39.78
Merged-chr17-45585096-1	chr17	45584996	45585196	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199116)	TTS (NM_001199116)	7297.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	15.34	13.08	14.26	10.46	13.5	16.93	12.62	16.37	24.78	21.09	32.66	17.23
Merged-chr5-3596208-3	chr5	3596110	3596310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027777, exon 1 of 23)	5' UTR (NM_027777, exon 1 of 23)	144.0	NM_001293806	71382.0	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	161.52	147.4	151.74	189.03	160.37	185.64	130.54	215.58	237.8	223.44	334.65	144.1
Merged-chr4-119422811-3	chr4	119422710	119422910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	126.0	NM_001014900	332934.0	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	24.63	23.64	29.09	30.16	26.18	28.54	10.96	22.23	36.78	39.67	38.19	16.29
Merged-chr19-3935211-3	chr19	3935108	3935308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	22.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	72.28	62.88	69.6	40.22	69.14	78.08	50.49	66.31	70.61	77.32	99.49	44.17
Merged-chr15-93519120-3	chr15	93519004	93519204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033217, intron 1 of 7)	CpG	76787.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	16.96	23.64	21.68	16.09	26.59	38.88	44.18	33.0	16.72	15.57	26.13	19.42
Merged-chr1-191070988-2	chr1	191070879	191071079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7958.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	33.52	24.9	23.39	14.88	13.09	45.47	14.62	15.48	7.67	4.52	4.52	10.34
Merged-chr16-21692958-3	chr16	21692837	21693037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	RSINE1|SINE|B4	1728.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	35.13	21.63	19.4	15.28	70.77	77.14	27.9	40.23	82.41	70.29	50.25	30.7
Merged-chr8-116504947-3	chr8	116504848	116505048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029297)	promoter-TSS (NM_029297)	-67.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	21.0	24.9	41.64	26.55	33.96	22.26	9.3	36.65	67.07	32.13	67.33	32.58
Merged-chr9-35099142-3	chr9	35099036	35099236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-17592.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	14.94	18.11	11.98	30.57	36.0	24.46	25.24	38.1	21.64	29.62	26.63	24.12
Merged-chr12-8674640-3	chr12	8674530	8674730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030723)	promoter-TSS (NM_030723)	-51.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	23.42	28.17	21.11	43.84	25.77	31.67	53.81	30.22	41.5	40.67	43.72	27.88
Merged-chr14-27351654-3	chr14	27351545	27351745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9744.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	59.36	42.76	46.21	62.74	49.09	93.13	45.51	71.38	59.79	53.73	44.72	29.13
Merged-chr11-70433382-3	chr11	70433261	70433461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	781.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	33.52	37.23	47.92	50.68	47.05	82.47	42.52	50.47	67.86	51.21	70.85	33.21
Merged-chr14-70159502-3	chr14	70159398	70159598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	4.0	NM_001112735	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	36.34	13.08	22.25	19.31	24.55	22.89	15.94	22.68	36.39	39.16	35.68	16.92
Merged-chr14-7817982-3	chr14	7817923	7818123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134080)	promoter-TSS (NM_134080)	66.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	48.86	62.38	70.74	78.03	83.46	84.98	78.06	91.51	66.48	66.78	96.48	38.22
Merged-chr12-111668713-3	chr12	111668652	111668852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021273)	TTS (NM_021273)	3586.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	30.28	38.23	33.66	40.22	30.27	42.33	34.21	19.51	36.39	39.16	41.2	33.83
Merged-chr5-64818491-1	chr5	64818391	64818591	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008453, intron 2 of 5)	intron (NM_008453, intron 2 of 5)	14968.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.85	2.01	2.28	14.08	9.82	4.08	5.31	19.18	2.36	1.0	6.53	4.7
Merged-chr18-34624597-2	chr18	34624497	34624697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-27.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	16.96	7.8	25.67	18.1	21.27	26.65	10.3	18.9	44.06	32.13	45.22	32.58
Merged-chrX-74269937-3	chrX	74269856	74270056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052835)	promoter-TSS (NM_052835)	-860.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	21.0	19.12	23.39	30.16	24.55	21.95	11.96	16.46	17.9	16.07	43.21	26.94
Merged-chrX-18187273-3	chrX	18187164	18187364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310444, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	24689.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	56.53	32.7	26.24	53.09	27.41	36.37	44.84	52.32	30.88	19.08	50.25	30.7
Merged-chr17-80237062-2	chr17	80236959	80237159	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12608.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.81	0.5	0.0	0.8	21.27	24.77	17.27	51.34	33.24	29.62	49.24	35.4
Merged-chr4-72411484-3	chr4	72411372	72411572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210228.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	33.52	38.48	46.78	47.86	74.05	63.66	55.47	67.12	58.02	51.72	40.7	21.93
Merged-chr8-72219706-3	chr8	72219616	72219816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-14.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	77.93	77.72	75.3	80.04	103.09	109.12	60.46	82.51	103.65	106.45	120.6	70.8
Merged-chr13-85289319-3	chr13	85289250	85289450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145452, exon 1 of 25)	5' UTR (NM_145452, exon 1 of 25)	136.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	201.09	193.43	186.54	230.86	223.78	232.36	240.82	225.0	296.21	293.23	386.41	180.13
Merged-chr18-77858680-3	chr18	77858584	77858784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-62294.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	48.46	44.27	85.0	35.39	77.73	85.29	56.47	48.48	71.99	63.27	33.67	39.16
Merged-chr9-74990181-3	chr9	74990083	74990283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	14072.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	19.38	17.36	32.52	35.39	23.73	15.05	27.9	31.63	23.01	26.61	29.14	26.63
Merged-chr5-107960964-3	chr5	107960871	107961071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	26106.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	50.47	58.1	77.01	43.04	62.18	49.86	53.48	64.6	62.15	42.68	73.86	29.76
Merged-chr11-97660424-3	chr11	97660303	97660503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3009.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	69.86	51.06	65.6	46.66	72.41	82.16	36.54	47.52	101.49	104.44	137.68	67.35
Merged-chr8-35556272-3	chr8	35556172	35556372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-31526.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	41.19	34.21	69.6	69.58	54.41	39.51	51.49	76.82	93.82	91.89	164.81	75.81
Merged-chr8-20122336-3	chr8	20122276	20122476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	175056.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	31.9	44.52	29.09	37.4	61.37	43.9	75.07	31.35	167.58	190.8	236.17	101.5
Merged-chr6-127240305-3	chr6	127240184	127240384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67683.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	49.26	42.76	65.6	50.68	48.27	56.44	32.88	33.64	77.69	59.75	65.32	33.83
Merged-chr1-192138136-3	chr1	192138014	192138214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-74.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	27.05	25.4	35.94	22.93	45.41	40.45	23.58	53.44	50.16	44.69	71.86	20.99
Merged-chr17-45564443-3	chr17	45564344	45564544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357105, intron 1 of 3)	intron (NM_001357105, intron 1 of 3)	508.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	38.76	39.74	15.4	22.12	34.77	40.76	25.24	23.75	50.55	38.66	46.73	19.42
Merged-chr6-90604787-3	chr6	90604682	90604882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-98.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	111.04	134.06	137.48	133.93	123.55	183.75	160.44	144.42	210.46	220.42	281.39	140.34
Merged-chr1-67382527-2	chr1	67382425	67382625	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	259498.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	2.42	2.01	1.71	4.02	41.73	43.27	22.26	42.34	52.91	43.18	41.2	24.12
Merged-chr13-51846170-1	chr13	51846070	51846270	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	6.86	11.07	14.83	9.25	7.77	14.42	9.63	6.73	25.96	18.58	24.12	11.28
Merged-chrX-52912211-3	chrX	52912093	52912293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290546)	promoter-TSS (NM_001290546)	-21.0	NM_027642	70998.0	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	69.05	71.69	82.15	71.59	99.0	96.89	66.1	123.56	101.1	116.99	159.79	72.99
Merged-chr1-171283468-3	chr1	171283383	171283583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013919, intron 8 of 12)	intron (NM_013919, intron 8 of 12)	-2297.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	60.57	42.01	53.05	53.49	20.46	30.1	15.94	28.29	31.08	39.16	33.16	18.8
Merged-chr10-59974272-1	chr10	59974172	59974372	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22502.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	3.63	4.02	5.13	4.83	11.86	3.45	13.62	15.08	8.06	2.01	16.08	6.27
Merged-chr12-85498030-3	chr12	85497939	85498139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24149.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	76.72	61.37	59.33	56.71	118.23	116.02	68.1	85.4	107.0	99.92	136.68	53.88
Merged-chr1-66817622-3	chr1	66817431	66817631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	64.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	75.91	86.02	57.05	110.2	71.59	93.13	92.68	90.53	123.52	151.64	161.3	106.82
Merged-chr13-23710629-3	chr13	23710542	23710742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010424, exon 1 of 6)	exon (NM_010424, exon 1 of 6)	212.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	28.67	38.74	29.66	41.83	34.77	37.63	30.23	40.23	47.01	38.16	54.27	35.71
Merged-chr15-93340840-3	chr15	93340731	93340931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3896.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	43.21	37.48	55.9	33.78	56.87	98.15	46.5	75.62	73.56	89.88	67.84	48.87
Merged-chr13-107889242-3	chr13	107889132	107889332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	CpG	832.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	30.69	31.44	31.38	49.07	35.18	26.65	30.89	36.9	58.61	52.72	51.25	40.1
Merged-chr5-98329361-3	chr5	98329243	98329443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024614)	promoter-TSS (NM_001024614)	39.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	20.59	33.45	22.82	30.97	48.27	38.26	57.8	49.46	22.42	23.6	27.64	25.37
Merged-chr17-5576924-3	chr17	5576816	5577016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	84316.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	34.73	21.38	26.24	25.74	38.86	30.73	34.21	63.11	44.84	26.61	44.22	31.01
Merged-chr5-127610964-3	chr5	127610854	127611054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6438.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	26.25	23.39	25.1	24.94	41.73	39.2	37.54	37.21	47.6	29.12	33.16	32.58
Merged-chr9-107724945-3	chr9	107724828	107725028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14453.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	34.32	31.19	45.64	39.01	61.77	60.21	51.15	69.53	91.46	88.87	127.13	59.21
Merged-chr7-81213221-3	chr7	81213112	81213312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	-592.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	92.87	84.76	83.86	81.65	84.68	106.61	69.42	104.92	105.82	111.47	136.68	79.57
Merged-chr8-123041626-2	chr8	123041572	123041772	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045268)	promoter-TSS (NR_045268)	612.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	21.0	24.15	6.85	12.07	18.0	24.77	7.31	11.58	28.52	26.61	21.1	20.99
Merged-chr7-44344855-3	chr7	44344776	44344976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 21 of 24)	intron (NM_001034115, intron 21 of 24)	30154.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	17.36	27.17	31.95	36.6	15.55	25.09	28.23	36.31	29.31	40.17	43.21	24.75
Merged-chr10-99179825-3	chr10	99179744	99179944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71709.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	112.26	89.29	128.92	197.88	121.09	164.31	159.77	213.37	143.78	117.99	191.95	104.63
Merged-chr2-148902522-3	chr2	148902414	148902614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27002.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	27.86	29.18	20.54	16.09	24.55	32.61	39.2	37.35	20.46	30.63	33.67	18.17
Merged-chr13-112507020-3	chr13	112506926	112507126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010560)	TTS (NM_010560)	42956.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	44.01	26.41	42.78	45.45	53.18	23.2	51.49	63.9	27.34	40.17	47.74	24.43
Merged-chr3-88913941-3	chr3	88913837	88914037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144898)	promoter-TSS (NM_144898)	13.0	NM_144898	229524.0	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	95.7	71.43	74.73	72.4	90.82	113.83	67.1	100.99	85.36	97.91	97.98	73.93
Merged-chr8-116993580-3	chr8	116993455	116993655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-106.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	172.42	150.41	244.73	252.98	222.96	245.21	180.7	271.23	267.1	272.64	425.6	224.93
Merged-chr4-139743782-2	chr4	139743675	139743875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011039, intron 8 of 8)	intron (NM_011039, intron 8 of 8)	89193.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	10.5	20.88	21.11	22.52	2.45	0.0	0.66	0.0	36.58	21.09	26.63	16.6
Merged-chr8-88199273-5	chr8	88199150	88199350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	37.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	55.72	62.88	49.63	66.36	49.5	76.51	69.09	64.54	71.4	91.38	77.88	58.27
Merged-chr8-79498828-3	chr8	79498732	79498932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99364.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	69.05	85.27	136.34	128.7	124.37	146.75	141.17	193.77	131.78	142.1	212.55	102.44
Merged-chr7-89941186-3	chr7	89941047	89941247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291288)	promoter-TSS (NM_001291288)	57.0	NM_001291289	67669.0	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	110.24	82.0	76.44	62.74	87.55	98.15	65.44	105.87	110.54	113.48	115.57	72.05
Merged-chr2-101766799-3	chr2	101766708	101766908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30899.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	35.94	21.38	39.93	50.68	42.14	27.91	37.2	54.45	49.37	38.66	59.29	21.62
Merged-chr8-8143194-3	chr8	8143104	8143304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	517569.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	29.07	33.2	26.24	18.9	31.5	37.32	12.62	16.6	84.77	63.27	93.96	39.47
Merged-chr15-5347973-3	chr15	5347884	5348084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103797.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	42.8	23.9	39.93	26.55	46.23	54.25	38.53	37.09	47.99	50.71	55.78	22.24
Merged-chr5-125333220-3	chr5	125333114	125333314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7880.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	23.42	24.15	26.24	29.36	29.86	26.97	36.21	36.25	31.86	28.12	43.21	21.62
Merged-chr18-4797948-3	chr18	4797852	4798052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14534.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	23.02	23.14	39.93	54.7	41.32	27.28	19.6	40.12	26.95	21.09	41.2	19.74
Merged-chr9-61054651-3	chr9	61054565	61054765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37596.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	25.44	22.39	26.24	32.18	25.77	20.07	29.56	25.6	37.76	24.1	64.82	24.75
Merged-chr4-120815827-3	chr4	120815744	120815944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-131.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	62.18	40.75	56.48	68.78	48.27	48.29	33.55	59.47	82.22	51.72	68.84	36.65
Merged-chrX-48285433-4	chrX	48285337	48285537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045916)	promoter-TSS (NR_045916)	-11.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	26.65	21.13	19.4	17.7	25.77	31.36	14.28	27.42	33.24	29.12	39.19	25.69
Merged-chr15-63998234-3	chr15	63998150	63998350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360035)	promoter-TSS (NM_001360035)	-184.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	42.4	33.2	27.95	25.74	62.18	55.5	30.89	44.47	52.71	54.73	53.26	24.43
Merged-chr14-56668214-3	chr14	56668124	56668324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-24.0	NR_153396	75339.0	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	190.19	182.11	235.03	217.59	204.14	214.48	171.07	212.13	192.36	182.26	226.12	126.87
Merged-chr9-41130737-3	chr9	41130620	41130820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27342.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	43.21	19.37	46.21	52.29	38.46	40.45	46.5	49.68	39.73	30.63	31.66	22.87
Merged-chr2-51972256-3	chr2	51972155	51972355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	953.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	21.0	29.18	29.66	39.42	33.96	30.42	23.58	44.13	28.72	23.1	50.25	20.05
Merged-chr2-45236347-3	chr2	45236247	45236447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118905.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	127.6	110.17	107.82	92.51	129.69	146.75	98.32	106.51	145.55	144.1	149.24	63.28
Merged-chr10-77259200-3	chr10	77259108	77259308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026944)	promoter-TSS (NR_026944)	15.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	164.75	143.87	149.46	149.22	202.51	227.34	126.22	170.97	243.3	212.89	275.86	157.26
Merged-chr1-167337324-3	chr1	167337211	167337411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12680.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	34.73	48.54	59.33	40.62	28.64	49.54	42.85	50.02	43.27	41.17	36.68	25.69
Merged-chr10-85970065-3	chr10	85969965	85970165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-12272.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	43.21	43.51	58.19	38.21	37.64	52.05	33.88	38.5	47.01	53.22	61.81	21.3
Merged-chr1-194976415-3	chr1	194976331	194976531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033564, exon 1 of 5)	non-coding (NR_033564, exon 1 of 5)	528.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	88.03	88.29	61.61	113.02	71.59	79.02	130.88	94.77	84.18	89.37	119.59	76.12
Merged-chr8-79640141-3	chr8	79640041	79640241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081164, intron 1 of 20)	CpG	465.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	33.92	21.88	31.38	35.39	27.0	31.04	38.53	40.4	45.24	49.21	51.76	36.03
Merged-chr9-96363795-3	chr9	96363677	96363877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-62.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	48.46	63.64	66.17	63.55	67.5	109.12	65.44	85.88	95.2	116.99	116.58	62.03
Merged-chr3-137981559-3	chr3	137981459	137981659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310753)	promoter-TSS (NM_001310753)	-10.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	67.03	67.41	46.78	67.97	90.0	110.69	48.16	81.79	100.31	59.75	99.99	45.74
Merged-chr1-173741829-3	chr1	173741727	173741927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-18.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	85.6	95.83	79.29	78.03	110.87	158.04	70.09	114.81	158.33	147.12	167.83	100.56
Merged-chr5-125348246-3	chr5	125348139	125348339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7145.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	23.02	16.85	24.53	15.69	14.73	18.81	15.28	24.73	33.04	25.11	31.66	15.66
Merged-chr1-151118707-3	chr1	151118597	151118797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-19337.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	24.23	32.2	21.11	17.29	22.09	27.28	16.94	14.22	22.42	24.1	35.68	11.9
Merged-chr7-141266462-3	chr7	141266362	141266562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252600)	promoter-TSS (NM_001252600)	-38.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	52.09	62.88	70.17	61.54	67.09	94.39	40.86	53.66	107.79	101.43	121.6	62.97
Merged-chr18-46533800-3	chr18	46533703	46533903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7832.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	55.32	32.45	19.4	24.13	57.27	109.75	45.18	51.31	60.58	68.29	57.28	26.31
Merged-chr15-8169013-3	chr15	8168854	8169054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-152.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	67.03	75.21	83.29	89.69	89.18	84.98	74.07	126.67	71.59	81.34	106.53	57.01
Merged-chr19-9023365-3	chr19	9023259	9023459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039959, intron 4 of 5)	intron (NM_001039959, intron 4 of 5)	34075.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	20.19	13.33	25.67	30.57	39.27	29.48	19.93	34.21	20.85	28.12	39.19	14.72
Merged-chr18-24246071-3	chr18	24245967	24246167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013814, exon 4 of 13)	exon (NM_013814, exon 4 of 13)	40073.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	109.02	101.87	147.18	117.04	136.64	140.48	130.54	175.85	114.47	98.91	115.07	80.82
Merged-chr2-79619191-3	chr2	79619075	79619275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16250.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	37.55	24.65	34.23	34.99	48.68	49.23	35.54	49.71	16.33	31.63	39.19	36.34
Merged-chr1-13589950-3	chr1	13589830	13590030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-20.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	120.33	100.61	95.84	101.35	127.64	147.38	82.71	110.16	155.38	147.12	162.3	75.5
Merged-chr7-142393278-3	chr7	142393178	142393378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5408.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	93.28	85.27	120.94	98.54	80.59	85.92	105.96	112.23	108.97	102.43	126.63	78.63
Merged-chr7-75638952-3	chr7	75638843	75639043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	183409.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	64.2	53.58	102.68	82.85	58.5	70.24	42.19	70.65	21.44	21.09	25.63	15.04
Merged-chr11-116017888-1	chr11	116017788	116017988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5169.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	13.33	15.34	6.28	9.25	4.91	23.2	4.32	2.5	16.92	13.05	10.55	8.77
Merged-chr2-136937008-3	chr2	136936916	136937116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37665.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	73.49	76.21	96.41	64.75	107.19	112.26	99.32	105.51	110.15	114.48	90.45	62.34
Merged-chr10-117393424-3	chr10	117393327	117393527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16454.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	52.09	32.2	31.95	50.27	40.09	71.18	37.2	59.72	94.41	90.88	120.6	54.2
Merged-chr10-19508220-1	chr10	19508120	19508320	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152784)	TTS (NR_152784)	13577.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	2.42	1.01	5.13	4.42	4.91	1.57	8.3	7.35	6.29	8.03	4.02	4.07
Merged-chr17-35195888-3	chr17	35195784	35195984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105939)	TTS (NR_105939)	912.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	34.73	37.98	33.09	15.28	31.91	44.84	25.58	24.53	43.07	44.19	34.67	33.52
Merged-chr10-61451711-3	chr10	61451608	61451808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	961.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	34.73	39.99	25.67	39.82	50.73	47.35	27.57	55.82	42.09	44.19	51.25	25.37
Merged-chr9-111094797-3	chr9	111094681	111094881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-23330.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	28.27	13.58	22.82	29.36	27.0	23.52	18.27	33.06	25.18	18.08	28.14	15.35
Merged-chr2-118111766-3	chr2	118111659	118111859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-117.0	NM_011580	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	20.59	15.09	39.93	19.31	24.14	20.07	21.59	20.02	23.01	13.56	21.1	10.65
Merged-chr19-41345132-3	chr19	41345025	41345225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39945.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	44.82	29.43	34.8	40.62	31.91	50.17	27.57	38.13	44.25	65.78	38.19	27.25
Merged-chr2-129596088-3	chr2	129595994	129596194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	632.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	115.08	129.79	142.04	132.32	84.68	113.2	82.38	99.45	162.07	205.86	187.93	108.39
Merged-chr13-106691941-3	chr13	106691849	106692049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2c|LINE|L1	245009.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	50.88	56.85	66.17	52.69	51.96	67.1	33.55	54.34	72.58	61.26	64.32	31.33
Merged-chr10-121626511-3	chr10	121626395	121626595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-163.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	138.91	131.55	110.67	145.19	184.1	160.86	106.29	202.82	219.31	222.93	222.1	137.21
Merged-chr18-43509142-3	chr18	43509017	43509217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70831.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	56.53	80.74	89.56	66.77	103.91	101.6	95.67	104.8	106.6	125.53	145.72	54.51
Merged-chr5-105531539-1	chr5	105531439	105531639	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	L1MEf|LINE|L1	12068.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.42	5.03	6.85	3.22	2.45	1.57	10.63	9.34	0.59	0.0	0.0	0.0
Merged-chr8-90909380-4	chr8	90909229	90909429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	CpG	-22920.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	16.96	20.88	32.52	19.71	15.55	23.2	25.58	16.99	21.64	25.61	19.6	22.56
Merged-chr2-129800540-3	chr2	129800429	129800629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183262)	promoter-TSS (NM_183262)	12.0	NM_001038635	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	84.8	62.38	46.21	32.58	74.05	134.84	39.86	37.21	84.77	77.32	73.36	36.03
Merged-chr8-68392756-3	chr8	68392630	68392830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	24271.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	45.23	25.66	37.08	55.5	85.5	78.08	88.03	109.57	60.78	63.77	57.79	44.48
Merged-chr2-128082783-1	chr2	128082683	128082883	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028765, intron 15 of 17)	intron (NM_028765, intron 15 of 17)	-43255.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.42	4.53	0.57	4.83	1.64	1.88	11.63	7.37	3.74	0.5	3.52	4.7
Merged-chr8-109564090-3	chr8	109563990	109564190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	1771.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	44.42	38.99	57.62	48.67	49.5	70.24	25.24	50.16	50.35	58.24	70.35	39.78
Merged-chr3-87983023-1	chr3	87982923	87983123	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11930.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	2.42	4.02	6.85	1.61	1.23	0.94	5.31	2.69	16.72	16.57	14.57	11.9
Merged-chr16-57534549-3	chr16	57534431	57534631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-14711.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	29.48	21.88	45.64	20.91	21.27	20.38	27.57	35.22	27.14	17.57	23.11	18.8
Merged-chr14-20845892-3	chr14	20845795	20845995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9233.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	16.96	25.66	25.67	25.74	23.73	47.04	24.25	32.94	30.49	29.62	53.77	19.74
Merged-chr19-4294584-3	chr19	4294485	4294685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 2 of 20)	intron (NM_001290818, intron 2 of 20)	-11448.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	110.24	91.3	119.8	106.99	112.09	129.51	107.96	101.47	137.09	107.45	134.67	78.0
Merged-chr4-136053446-3	chr4	136053355	136053555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-84.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	53.7	40.5	63.32	65.96	58.09	80.27	36.21	49.79	94.02	79.83	79.89	38.85
Merged-chr8-115650417-3	chr8	115650330	115650530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56464.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	71.88	53.07	97.55	123.07	81.0	77.45	105.63	125.47	63.33	61.26	107.53	45.42
Merged-chr13-64432509-4	chr13	64432459	64432659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	6.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	71.47	74.96	81.0	76.82	96.55	92.5	75.07	101.92	64.12	71.3	86.43	46.68
Merged-chr10-34194707-3	chr10	34194616	34194816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12835.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	34.73	17.86	21.68	8.04	11.45	32.3	17.61	20.41	25.96	36.65	31.66	18.8
Merged-chr1-34472754-3	chr1	34472696	34472896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011206, exon 13 of 15)	exon (NM_011206, exon 13 of 15)	13050.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	33.52	47.54	53.05	43.84	41.32	48.92	47.5	46.04	39.34	39.67	59.29	28.51
Merged-chr4-123016597-3	chr4	123016492	123016692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025873)	promoter-TSS (NM_025873)	-1.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	57.74	57.35	66.74	55.5	49.09	52.68	22.92	44.3	102.08	71.3	95.97	30.39
Merged-chr7-125707811-3	chr7	125707724	125707924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207239)	promoter-TSS (NM_207239)	-46.0	NM_001081022	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	166.77	155.19	173.99	138.76	144.0	231.73	132.87	147.48	211.24	160.17	231.64	126.87
Merged-chr2-103967015-3	chr2	103966926	103967126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-2531.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	32.3	45.78	55.9	57.92	48.27	64.6	49.49	76.65	59.6	48.2	72.86	41.35
Merged-chr4-97751232-3	chr4	97751141	97751341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26385.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	98.93	92.06	102.11	110.6	100.23	102.85	97.99	128.75	114.67	99.92	152.25	80.2
Merged-chr13-44733966-3	chr13	44733852	44734052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	CpG	2681.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	66.22	62.38	73.02	41.83	51.14	88.74	43.85	51.67	84.38	55.73	71.86	39.47
Merged-chr18-61099176-3	chr18	61099078	61099278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6394.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	38.36	40.5	59.33	55.1	54.82	61.77	37.2	74.44	64.12	76.82	114.06	35.09
Merged-chr14-101594476-3	chr14	101594349	101594549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	14742.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	59.76	80.74	82.72	78.83	85.5	68.36	89.69	95.33	92.64	62.76	94.47	44.48
Merged-chr5-67306989-3	chr5	67306895	67307095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310629)	promoter-TSS (NM_001310629)	40.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	99.74	123.0	119.8	131.52	106.78	132.95	106.96	126.22	123.13	98.91	143.71	79.88
Merged-chr17-67334470-1	chr17	67334370	67334570	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	19989.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.02	0.0	5.7	4.83	6.14	5.02	9.63	9.95	1.97	4.52	18.09	5.64
Merged-chr2-25262521-3	chr2	25262421	25262621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175286)	promoter-TSS (NM_175286)	-77.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	158.29	132.56	187.68	146.4	176.32	202.57	103.97	171.56	157.35	178.25	213.05	93.98
Merged-chr4-129032338-3	chr4	129032236	129032436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25935.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	22.61	22.13	45.64	22.12	34.36	33.24	29.56	23.13	43.27	24.1	49.75	20.99
Merged-chr2-11705763-3	chr2	11705657	11705857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271501)	promoter-TSS (NM_001271501)	45.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	23.42	26.66	17.68	20.11	25.77	25.4	18.27	24.03	41.11	30.13	51.25	17.54
Merged-chr16-57231583-3	chr16	57231472	57231672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358433)	promoter-TSS (NM_001358433)	-106.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	278.62	248.76	223.62	252.98	299.05	353.4	243.48	246.37	319.81	364.53	369.32	187.02
Merged-chr2-112268089-3	chr2	112267988	112268188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133649, intron 1 of 24)	intron (NM_133649, intron 1 of 24)	1774.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	33.52	21.13	31.38	27.75	46.64	44.21	43.85	64.46	43.66	31.63	30.15	33.52
Merged-chr7-105554400-3	chr7	105554323	105554523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	63.0	NM_011421	20597.0	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	46.03	48.54	45.64	55.5	63.0	64.6	59.13	85.46	60.19	58.75	76.38	44.48
Merged-chr8-125286409-3	chr8	125286337	125286537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	206396.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	47.24	47.29	41.64	47.86	58.91	83.41	56.14	56.13	52.91	62.26	59.29	47.93
Merged-chr19-41896209-3	chr19	41896107	41896307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199447)	promoter-TSS (NM_199447)	-54.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	41.99	42.01	35.37	30.97	57.68	47.66	21.26	38.27	61.17	40.67	45.22	31.33
Merged-chr1-37890465-3	chr1	37890370	37890570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026913)	promoter-TSS (NM_026913)	-7.0	NM_001356482	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	80.76	83.26	63.89	64.35	93.68	97.83	61.45	68.44	88.51	105.94	97.98	54.82
Merged-chr16-10993156-3	chr16	10993056	10993256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019980)	promoter-TSS (NM_019980)	-35.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	160.71	150.67	211.07	182.2	161.6	200.37	179.04	165.25	227.37	205.36	316.56	145.04
Merged-chr8-117364983-3	chr8	117364879	117365079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	15809.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	53.7	27.17	97.55	49.47	83.87	77.45	78.06	129.22	67.66	37.66	71.86	44.48
Merged-chr14-75790559-3	chr14	75790452	75790652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3515.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	23.02	25.91	39.93	33.78	34.77	27.28	29.56	42.06	28.52	15.57	50.25	24.12
Merged-chr15-58415459-3	chr15	58415350	58415550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145959)	promoter-TSS (NM_145959)	-18.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	64.61	61.12	39.93	49.47	60.14	64.28	39.86	59.52	74.54	73.31	61.3	49.18
Merged-chr15-76351703-3	chr15	76351598	76351798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025340)	promoter-TSS (NM_025340)	404.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	23.82	31.44	21.68	21.32	31.09	37.0	34.55	25.46	43.07	33.64	43.72	28.51
Merged-chrX-7601128-1	chrX	7601028	7601228	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138603, intron 2 of 16)	intron (NM_138603, intron 2 of 16)	4292.0	NM_138603	54638.0	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	2.02	2.52	4.56	2.01	2.86	4.39	9.97	8.13	3.93	6.53	8.04	3.13
Merged-chr17-56613450-3	chr17	56613371	56613571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	76.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	44.42	67.16	47.92	43.04	46.64	66.16	64.77	38.83	48.58	77.83	59.8	46.05
Merged-chr1-173913037-3	chr1	173912922	173913122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301745)	promoter-TSS (NM_001301745)	24.0	NM_001301745	381308.0	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	57.34	68.42	73.02	88.08	103.09	96.27	67.1	110.41	67.46	59.75	77.38	42.29
Merged-chr2-29060266-3	chr2	29060166	29060366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009442)	promoter-TSS (NM_009442)	3.0	NM_009442	22130.0	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	61.38	47.04	39.36	32.18	42.96	88.11	22.92	36.84	61.96	90.88	50.25	39.47
Merged-chr5-127611322-3	chr5	127611230	127611430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6062.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	27.46	33.96	54.19	47.06	29.86	33.24	23.92	47.52	36.98	42.18	38.69	20.36
Merged-chr14-72581225-3	chr14	72581118	72581318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 7 of 25)	intron (NM_207636, intron 7 of 25)	128785.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	64.2	55.59	66.17	74.41	53.59	63.34	40.86	66.5	68.25	59.25	64.32	48.56
Merged-chr10-80826456-3	chr10	80826348	80826548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027656)	promoter-TSS (NR_027656)	-208.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	264.89	260.08	292.64	246.55	241.37	352.14	253.78	242.55	351.68	361.52	349.73	227.74
Merged-chr18-5042685-1	chr18	5042585	5042785	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3904.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	5.65	1.01	4.56	2.01	7.36	6.59	7.64	11.47	1.38	0.0	2.51	3.76
Merged-chr19-29366394-3	chr19	29366295	29366495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1043.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	77.93	96.34	65.6	56.71	58.91	107.24	56.14	59.38	78.48	72.3	63.82	34.77
Merged-chr5-41739004-3	chr5	41738917	41739117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25203.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	28.67	28.93	57.05	45.85	45.0	37.0	37.87	49.79	62.55	45.69	67.33	30.07
Merged-chr7-110379527-3	chr7	110379437	110379637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	157834.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	34.73	19.37	28.52	46.66	61.37	48.92	32.88	46.79	63.14	48.2	54.27	42.6
Merged-chr11-62281462-3	chr11	62281370	62281570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	-3.0	NM_028360	72795.0	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	55.32	55.84	71.88	57.92	63.0	79.65	35.21	54.95	77.69	90.38	72.86	48.56
Merged-chr15-100614621-3	chr15	100614513	100614713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045701, exon 2 of 2)	non-coding (NR_045701, exon 2 of 2)	497.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	16.15	11.32	12.55	16.89	22.09	16.62	20.59	36.45	26.75	22.09	25.12	24.43
Merged-chr11-110399078-3	chr11	110399001	110399201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011943)	promoter-TSS (NM_011943)	-1.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	20.59	20.12	21.68	27.75	30.68	21.32	15.61	27.45	33.44	24.1	60.3	21.3
Merged-chr2-167063134-3	chr2	167063024	167063224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033196)	promoter-TSS (NM_001033196)	-109.0	NM_001033196	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	90.05	91.81	101.54	92.51	117.0	110.69	54.14	82.23	127.85	103.94	120.09	70.17
Merged-chr6-115847219-3	chr6	115847132	115847332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010774, intron 3 of 7)	B3A|SINE|B2	6109.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	38.36	26.91	33.66	29.76	40.09	52.37	25.91	22.79	54.68	37.16	45.73	26.63
Merged-chr15-11716319-3	chr15	11716193	11716393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	189381.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	83.59	69.92	80.43	90.09	99.41	136.09	115.93	154.57	137.48	104.44	156.77	83.96
Merged-chr2-91476350-3	chr2	91476264	91476464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001145857, exon 9 of 12)	exon (NM_001145857, exon 9 of 12)	18833.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	24.23	19.37	28.52	34.99	30.68	38.57	26.57	40.4	28.72	40.67	61.3	28.51
Merged-chr7-27449425-3	chr7	27449343	27449543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	1465.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	50.88	32.7	43.35	42.23	44.18	38.57	48.16	45.48	47.6	33.14	73.86	34.46
Merged-chr10-61648594-3	chr10	61648509	61648709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026438)	promoter-TSS (NM_026438)	-12.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	85.6	76.46	73.59	63.95	85.91	88.43	65.44	87.14	95.2	98.91	103.01	57.95
Merged-chr2-155236514-3	chr2	155236407	155236607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291108)	promoter-TSS (NM_001291108)	-26.0	NR_111891	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	92.87	52.82	64.46	54.3	90.41	102.54	51.15	68.33	96.57	70.29	99.99	45.42
Merged-chr19-21406120-1	chr19	21406020	21406220	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	66541.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.02	1.26	5.13	4.83	0.82	3.76	13.29	12.84	0.39	0.0	0.0	1.25
Merged-chr11-94687372-3	chr11	94687264	94687464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9871.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	40.38	34.46	58.19	40.62	56.05	67.73	45.84	59.64	48.78	34.65	68.84	30.07
Merged-chr1-37472483-3	chr1	37472375	37472575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	16130.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	23.02	17.1	20.54	15.69	34.77	43.9	27.24	38.41	29.11	27.62	33.67	24.43
Merged-chr1-74295711-3	chr1	74295597	74295797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	8639.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	69.86	70.68	65.6	41.43	94.5	136.72	93.67	70.65	67.27	63.27	54.77	31.33
Merged-chr5-151651210-3	chr5	151651123	151651323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027009)	promoter-TSS (NM_027009)	-15.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	129.21	145.89	102.11	141.57	133.78	159.92	105.63	147.79	164.23	178.75	214.06	98.05
Merged-chr10-40077788-3	chr10	40077703	40077903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-52535.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	38.76	24.9	29.09	28.96	47.87	46.72	23.25	53.8	37.37	33.14	46.73	20.99
Merged-chr14-63104183-3	chr14	63104077	63104277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18285.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	52.49	43.51	42.21	73.2	67.91	52.37	60.79	81.17	74.74	41.67	60.3	46.99
Merged-chr15-98662752-6	chr15	98662636	98662836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080981, intron 1 of 16)	CpG	153.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	30.69	30.18	17.11	30.16	20.05	31.67	20.93	19.51	25.18	21.59	26.63	31.01
Merged-chr15-25268586-3	chr15	25268488	25268688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145176.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	70.66	70.68	54.19	49.47	81.0	65.54	33.55	69.0	92.25	83.85	63.31	36.97
Merged-chr10-122736981-3	chr10	122736879	122737079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	57664.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	80.36	61.37	73.02	80.84	55.23	88.11	69.42	77.08	64.91	89.88	66.83	66.41
Merged-chr2-166446719-3	chr2	166446609	166446809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	-742.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	144.56	106.4	126.07	126.29	154.64	182.5	119.58	158.27	190.0	133.06	197.98	128.44
Merged-chr4-47353137-3	chr4	47353027	47353227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-95.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	286.69	275.17	325.73	331.01	323.19	307.93	256.1	310.12	345.78	348.46	503.99	206.76
Merged-chr2-167690100-1	chr2	167690000	167690200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-659.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	18.98	16.6	18.25	10.86	27.41	22.26	10.63	17.27	25.57	26.61	24.62	14.1
Merged-chr11-69059630-3	chr11	69059522	69059722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-153.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	153.85	148.65	132.92	89.29	138.69	174.66	78.39	85.96	161.48	199.34	164.31	93.04
Merged-chr9-35116918-3	chr9	35116819	35117019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-55.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	87.62	86.27	81.58	75.61	96.96	110.69	93.01	85.74	137.48	116.99	138.69	67.35
Merged-chr11-115631142-3	chr11	115631033	115631233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2838.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	80.76	83.0	81.58	93.71	111.28	127.62	73.41	65.33	130.99	131.55	116.07	81.14
Merged-chr7-97211317-3	chr7	97211215	97211415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	114649.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	69.86	64.39	75.3	66.36	81.82	98.46	64.77	81.48	73.17	90.88	90.95	44.8
Merged-chr2-45085829-3	chr2	45085697	45085897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	24480.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	41.59	69.42	51.91	25.74	108.82	175.29	84.37	85.01	141.42	140.59	115.57	63.91
Merged-chr1-133131169-3	chr1	133131064	133131264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133819)	promoter-TSS (NM_133819)	-2.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	184.53	184.12	184.26	189.84	213.96	244.59	164.09	190.99	237.6	239.5	294.45	153.5
Merged-chr7-80324426-3	chr7	80324315	80324515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173445)	promoter-TSS (NM_173445)	39.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	55.32	76.97	52.48	77.62	72.82	95.01	72.75	43.26	80.64	86.36	109.54	54.51
Merged-chr5-72182925-3	chr5	72182834	72183034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14745.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	30.28	13.83	31.95	39.42	24.55	35.43	20.59	48.14	24.0	29.62	53.26	21.62
Merged-chr3-79572605-3	chr3	79572503	79572703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152118)	TTS (NR_152118)	4411.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	118.72	85.27	99.83	105.78	117.0	152.71	98.65	142.96	161.68	102.43	167.83	83.33
Merged-chr2-181483684-3	chr2	181483536	181483736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9570.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	54.92	49.05	61.61	25.34	84.28	101.91	55.14	42.48	50.55	46.7	37.69	14.72
Merged-chr2-91966491-3	chr2	91966404	91966604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-2941.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	47.65	28.67	59.9	56.71	81.82	72.12	50.16	49.85	76.51	64.27	74.37	56.39
Merged-chr13-73767353-3	chr13	73767251	73767451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	3654.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	34.73	24.65	36.51	27.75	31.91	31.98	24.58	48.87	41.3	36.15	73.36	39.78
Merged-chr16-33560470-3	chr16	33560368	33560568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	41873.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	47.65	45.28	61.04	43.44	58.09	63.34	37.87	63.45	64.71	68.79	62.31	34.46
Merged-chr2-133497972-3	chr2	133497867	133498067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54192.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	37.96	34.46	33.66	32.98	31.09	32.3	32.22	46.23	42.88	37.16	51.76	24.75
Merged-chr17-32947441-3	chr17	32947363	32947563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-102.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	53.7	48.54	61.04	83.26	96.96	83.72	44.51	75.56	84.97	77.32	124.11	45.42
Merged-chr10-14705557-3	chr10	14705475	14705675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045824)	promoter-TSS (NR_045824)	-34.0	NR_045824	69412.0	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	152.23	161.98	131.21	162.09	121.5	167.45	129.21	200.97	216.36	171.22	199.99	130.95
Merged-chr7-139295854-3	chr7	139295770	139295970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	47388.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	27.46	18.61	34.8	24.53	35.59	31.36	32.22	36.45	56.06	41.17	60.3	33.83
Merged-chrX-36115364-3	chrX	36115269	36115469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	intron (NM_133990, intron 1 of 10)	3261.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	19.38	19.12	16.54	10.05	22.5	19.76	10.96	9.73	35.01	27.11	11.56	17.23
Merged-chr7-27354190-1	chr7	27354090	27354290	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138676, intron 6 of 17)	intron (NM_138676, intron 6 of 17)	1818.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.81	2.01	1.14	4.42	0.82	3.14	1.99	2.94	10.23	8.54	22.61	15.66
Merged-chrX-142226715-3	chrX	142226622	142226822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290532)	promoter-TSS (NM_001290532)	-48.0	NM_001290532	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	51.28	31.19	22.82	34.99	42.14	46.1	35.87	17.75	63.53	53.73	39.7	43.23
Merged-chr2-153784835-3	chr2	153784731	153784931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036629, intron 3 of 7)	intron (NR_036629, intron 3 of 7)	3952.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	28.67	17.36	31.38	27.75	31.5	28.22	15.61	25.51	29.7	26.11	16.08	23.49
Merged-chr13-45088814-3	chr13	45088731	45088931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-86735.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	16.96	14.59	22.25	14.08	39.27	26.97	32.88	42.28	49.57	25.11	38.69	28.82
Merged-chr19-10305818-3	chr19	10305703	10305903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-926.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	63.8	62.13	82.15	55.1	54.0	86.23	44.18	61.4	51.53	44.69	52.76	21.62
Merged-chr3-95588844-3	chr3	95588728	95588928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177669)	promoter-TSS (NM_001177669)	-106.0	NM_146133	229593.0	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	144.96	128.78	132.92	150.82	168.55	206.96	132.2	187.91	158.14	136.57	161.8	116.22
Merged-chr12-73681388-3	chr12	73681278	73681478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	96582.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	57.74	36.47	74.73	51.08	52.37	86.86	47.17	62.72	62.74	33.64	46.23	46.36
Merged-chr2-181680247-3	chr2	181680149	181680349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356342)	promoter-TSS (NM_001356342)	-48.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	25.04	37.98	35.37	28.96	45.82	36.69	27.24	45.93	35.99	41.67	37.69	27.88
Merged-chr15-31336834-3	chr15	31336717	31336917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	30942.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	97.72	74.45	122.65	106.18	136.64	133.58	117.92	159.08	136.7	142.6	176.87	96.17
Merged-chr15-74926866-3	chr15	74926760	74926960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28191.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	23.82	28.17	46.21	25.74	30.27	41.71	27.9	30.17	41.89	59.25	50.75	30.07
Merged-chr5-123014952-3	chr5	123014857	123015057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-117.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	108.62	95.58	105.53	88.08	159.14	163.69	57.8	98.5	151.45	130.05	138.18	98.37
Merged-chr12-70974652-3	chr12	70974647	70974847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011184, exon 1 of 11)	exon (NM_011184, exon 1 of 11)	124.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	99.74	126.52	99.26	113.02	93.28	159.61	103.64	60.48	130.99	131.05	153.26	92.73
Merged-chr10-59263179-3	chr10	59263085	59263285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41263.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	39.57	37.98	42.21	33.78	36.41	43.27	39.2	45.62	74.35	49.71	56.78	36.97
Merged-chr9-82976127-2	chr9	82976026	82976226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-637.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	57.34	54.58	55.9	25.34	60.96	76.83	32.88	38.52	78.09	65.27	52.26	26.0
Merged-chr15-25563403-1	chr15	25563303	25563503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-59147.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	103.37	90.3	105.53	88.89	0.41	0.63	0.66	0.48	0.0	1.0	0.5	1.25
Merged-chr4-96553639-1	chr4	96553539	96553739	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010008)	promoter-TSS (NM_010008)	12.0	NM_010008	13110.0	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	2.42	5.03	3.99	4.83	24.55	21.32	17.27	16.54	1.38	1.51	4.02	2.82
Merged-chr18-80151041-3	chr18	80150923	80151123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175028, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	459.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	35.53	39.49	29.66	60.33	36.82	41.08	36.21	38.13	57.24	64.27	74.87	50.12
Merged-chr8-82370843-3	chr8	82370728	82370928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	31758.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	29.48	28.93	35.37	32.58	44.18	52.37	26.57	42.7	34.42	33.64	33.16	21.62
Merged-chr4-135495699-3	chr4	135495602	135495802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030189)	promoter-TSS (NM_030189)	-285.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	30.28	18.61	23.39	10.86	23.73	22.26	11.63	17.33	35.8	43.68	38.19	27.57
Merged-chr4-129811047-3	chr4	129810962	129811162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9417.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	39.17	26.16	51.34	28.15	45.41	79.65	38.53	49.65	70.41	65.78	67.33	40.1
Merged-chr4-9631840-3	chr4	9631770	9631970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11847.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	89.64	56.85	96.98	77.22	72.82	105.67	65.44	110.52	132.96	107.45	124.62	64.53
Merged-chr12-17266511-3	chr12	17266428	17266628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-67.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	111.85	108.41	155.73	119.86	167.73	172.78	105.3	169.88	179.97	162.68	256.77	108.7
Merged-chr5-139406266-3	chr5	139406190	139406390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-97.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	14.54	17.61	36.51	23.33	21.68	20.07	34.88	40.01	29.5	23.1	24.62	11.9
Merged-chr10-75921444-5	chr10	75921353	75921553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001161853, exon 1 of 9)	5' UTR (NM_001161853, exon 1 of 9)	161.0	NM_011418	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	21.0	24.4	31.95	17.29	29.05	23.2	25.58	20.89	32.65	38.66	32.16	26.94
Merged-chr1-153754182-4	chr1	153754170	153754370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	4844.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	9.69	11.07	10.84	10.46	15.96	13.17	16.61	8.8	11.01	8.03	12.56	7.83
Merged-chr8-47990546-3	chr8	47990438	47990638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	13.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	106.6	105.14	122.65	141.98	142.37	131.07	123.9	147.56	138.47	127.53	180.39	104.0
Merged-chrM-1911-2	chrM	1802	2002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											39226.73	42243.12	47509.91	52872.77	37525.84	45158.56	46210.95	51107.0	0.0	0.0	0.0	0.0
Merged-chr15-66577953-2	chr15	66577866	66578066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081409, intron 1 of 20)	CpG	394.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	29.88	48.29	26.24	32.18	24.96	29.48	29.9	21.62	27.14	23.1	26.13	25.37
Merged-chr2-30441953-3	chr2	30441850	30442050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25900.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	50.07	38.99	49.06	38.61	57.27	57.07	43.51	40.01	66.28	96.4	75.87	44.17
Merged-chr5-143818182-1	chr5	143818082	143818282	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-53680.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	6.46	2.01	9.13	7.64	20.05	7.21	14.28	11.78	6.69	14.06	5.02	8.46
Merged-chr15-66729647-3	chr15	66729541	66729741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009375, exon 27 of 48)	exon (NM_009375, exon 27 of 48)	58871.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	24.23	20.37	29.09	41.02	40.91	36.37	40.86	54.73	17.7	19.08	50.75	26.94
Merged-chr6-13690568-3	chr6	13690464	13690664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12598.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	18.17	19.12	18.83	16.89	18.82	34.49	15.94	23.16	27.54	27.11	24.62	6.27
Merged-chr10-89732377-3	chr10	89732281	89732481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-86.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	33.52	29.93	43.93	39.42	47.46	61.77	40.19	68.47	80.05	64.77	105.02	38.53
Merged-chr14-69089360-3	chr14	69089249	69089449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60060.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	138.1	112.68	203.65	174.15	186.96	171.52	147.48	208.32	205.34	200.34	260.79	124.37
Merged-chr13-9783907-3	chr13	9783807	9784007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18586.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	34.73	29.43	51.34	41.43	49.5	63.03	48.5	55.91	52.52	37.16	45.73	28.82
Merged-chr6-50458122-3	chr6	50458066	50458266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1812.0	NM_001347213	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	29.07	19.12	13.69	26.55	30.68	20.7	15.94	22.63	21.83	20.08	26.63	20.36
Merged-chr19-40894662-3	chr19	40894569	40894769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028319)	promoter-TSS (NM_028319)	-34.0	NR_106167	102466881.0		NR_106167	ENSMUSG00000099118	Mir8092	Gm27407|mmu-mir-8092	microRNA 8092	ncRNA	23.82	28.93	28.52	26.14	36.82	27.91	16.61	12.17	31.27	37.66	34.17	24.12
Merged-chr5-123865604-3	chr5	123865505	123865705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030701)	promoter-TSS (NM_030701)	-89.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	65.01	40.75	55.33	42.63	36.82	94.39	50.49	28.93	75.13	74.81	45.73	19.74
Merged-chr17-57249446-3	chr17	57249327	57249527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-24.0	NM_001242391	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	62.99	53.07	57.05	55.1	75.68	98.15	25.91	58.74	78.48	96.91	105.52	27.88
Merged-chr10-80656586-3	chr10	80656459	80656659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145361, exon 1 of 9)	5' UTR (NM_145361, exon 1 of 9)	512.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	48.46	53.32	35.94	28.56	63.41	53.31	30.23	39.0	53.5	77.32	68.34	33.52
Merged-chr13-70637716-1	chr13	70637616	70637816	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-82.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	45.23	56.85	50.77	43.04	60.96	70.24	64.77	75.11	62.94	60.25	83.41	56.7
Merged-chr5-134532594-3	chr5	134532485	134532685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	19849.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	54.51	63.89	75.87	65.96	94.5	115.71	71.75	94.04	104.83	107.45	133.66	69.86
Merged-chr12-84193123-3	chr12	84193036	84193236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	CpG	879.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	36.75	30.43	42.78	22.12	22.5	42.96	24.58	16.6	41.11	27.62	26.63	23.49
Merged-chr5-140731239-3	chr5	140731130	140731330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	7103.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	48.46	31.19	36.51	38.61	43.36	32.3	23.58	40.07	41.7	32.64	35.68	50.44
Merged-chr11-100319847-3	chr11	100319753	100319953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011508)	promoter-TSS (NM_011508)	-96.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	126.39	130.54	119.23	104.97	103.09	155.22	105.96	92.38	165.02	212.89	171.35	99.31
Merged-chr6-113237720-3	chr6	113237584	113237784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026849)	promoter-TSS (NM_026849)	-159.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	163.13	137.84	147.75	139.16	130.91	157.73	98.32	138.2	154.4	177.75	175.87	113.4
Merged-chr11-61175278-3	chr11	61175172	61175372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-213.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	335.96	342.33	303.48	276.71	295.78	403.88	279.69	274.09	364.46	483.03	415.55	245.6
Merged-chr5-52833988-3	chr5	52833894	52834094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-141.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	264.89	276.68	268.69	292.4	323.6	395.73	298.62	387.84	327.29	303.77	436.66	218.35
Merged-chr14-102976084-3	chr14	102975983	102976183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177715)	TTS (NM_177715)	6549.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	104.58	110.67	128.35	154.44	126.41	130.45	107.62	182.02	149.48	102.93	166.32	101.5
Merged-chr8-13785765-5	chr8	13785676	13785876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025924, exon 1 of 9)	exon (NM_025924, exon 1 of 9)	161.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	75.91	100.61	86.71	87.68	97.78	109.44	95.67	73.85	106.21	145.11	113.06	69.86
Merged-chr17-83215146-3	chr17	83215035	83215235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-148.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	66.63	49.55	74.16	58.72	62.59	73.06	46.17	86.8	73.56	72.3	116.58	37.91
Merged-chr1-154006260-3	chr1	154006136	154006336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	106307.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	25.04	30.94	67.88	39.82	30.27	29.79	17.61	30.62	36.58	32.13	34.67	26.94
Merged-chr5-96917069-3	chr5	96916966	96917166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4206.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	36.34	43.26	37.65	36.2	45.41	55.19	17.94	23.1	97.95	79.83	79.39	49.81
Merged-chr3-19894776-3	chr3	19894677	19894877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-94.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	37.55	56.09	71.88	66.77	60.96	61.15	55.8	82.93	66.09	62.76	95.47	44.8
Merged-chr12-87472319-3	chr12	87472233	87472433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025507)	promoter-TSS (NM_025507)	-34.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	46.84	37.23	35.37	24.94	51.96	65.22	22.26	51.93	76.51	57.24	75.37	48.24
Merged-chr7-88207596-3	chr7	88207504	88207704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70481.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	22.61	29.18	31.95	45.85	34.77	31.98	51.15	60.53	56.84	33.14	40.2	21.62
Merged-chr5-93268148-3	chr5	93268058	93268258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007635, intron 1 of 7)	CpG	585.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	44.42	47.79	22.82	28.56	33.96	87.8	42.85	36.76	60.78	67.78	56.28	35.09
Merged-chr9-107624746-3	chr9	107624638	107624838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	10604.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	18.17	21.88	19.97	16.09	34.77	50.8	18.27	19.04	75.13	75.82	54.77	24.12
Merged-chr11-69366644-3	chr11	69366532	69366732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2794.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	53.3	43.51	51.34	48.26	54.82	77.14	37.54	54.65	88.31	79.33	70.35	61.4
Merged-chr6-43265594-3	chr6	43265536	43265736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-8.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	13.73	16.1	15.4	19.71	29.05	18.5	22.92	23.13	24.59	23.6	20.6	19.11
Merged-chr13-12468663-3	chr13	12468551	12468751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6913.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	68.24	58.61	59.33	43.84	63.82	44.84	63.11	74.47	95.59	49.71	82.41	52.0
Merged-chr4-59083618-3	chr4	59083512	59083712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48456.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	17.36	26.41	45.64	40.62	18.41	36.06	13.62	29.47	40.32	38.66	26.63	21.93
Merged-chr8-126616037-3	chr8	126615918	126616118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22582.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	20.59	10.82	22.82	22.12	31.5	32.93	25.91	22.57	29.9	30.63	46.23	18.8
Merged-chr11-75651933-3	chr11	75651845	75652045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080774)	promoter-TSS (NM_001080774)	-205.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	10.9	11.57	26.81	20.91	23.73	23.2	7.31	22.23	30.88	28.62	41.2	12.53
Merged-chr8-70766905-3	chr8	70766804	70767004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023065)	promoter-TSS (NM_023065)	-241.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	112.66	121.49	93.55	52.69	98.59	156.16	110.28	87.9	167.77	185.78	175.87	78.63
Merged-chr12-87407068-3	chr12	87406969	87407169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18714.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	39.57	28.67	31.95	33.38	29.46	71.18	45.18	41.83	59.4	53.73	58.29	32.27
Merged-chr3-135731458-3	chr3	135731355	135731555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39908.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	48.46	37.48	33.66	30.16	33.14	40.45	19.93	46.35	70.41	56.74	62.31	28.82
Merged-chr8-18595028-3	chr8	18594915	18595115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173189)	promoter-TSS (NM_173189)	-116.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	39.98	46.28	37.08	41.43	51.96	65.85	71.42	53.55	39.93	54.73	58.29	28.51
Merged-chrX-12159006-3	chrX	12158903	12159103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	1343.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	27.46	19.37	14.83	20.51	22.09	34.18	21.92	30.45	22.42	26.11	29.65	17.23
Merged-chr5-96162240-1	chr5	96162140	96162340	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-250.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	16.15	11.07	6.85	14.08	14.73	24.46	24.58	15.36	19.67	16.57	18.59	14.1
Merged-chr11-103361584-3	chr11	103361502	103361702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 2 of 17)	intron (NM_001205236, intron 2 of 17)	2090.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	65.82	49.55	46.21	35.39	41.73	60.21	16.94	44.33	40.32	32.64	51.76	24.43
Merged-chr14-40919700-3	chr14	40919606	40919806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	-26741.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	92.47	66.15	86.14	113.82	93.28	96.89	80.72	130.01	73.95	97.41	106.53	49.5
Merged-chr15-80561314-3	chr15	80561212	80561412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163189)	promoter-TSS (NM_001163189)	-842.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	37.55	23.64	36.51	29.36	23.32	41.39	21.26	28.71	31.27	37.16	24.62	18.17
Merged-chr1-152809948-3	chr1	152809740	152809940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	B4|SINE|B4	9687.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	20.19	6.29	23.96	18.5	9.0	11.29	9.97	10.04	9.44	14.56	14.07	23.81
Merged-chr5-148486370-3	chr5	148486275	148486475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65298.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	128.41	125.51	181.98	184.21	148.5	144.87	111.61	179.69	133.94	96.4	175.37	93.04
Merged-chr5-90504918-3	chr5	90504801	90505001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007423, intron 10 of 14)	intron (NM_007423, intron 10 of 14)	-14048.0	NM_145146	280662.0	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	19.38	18.11	26.81	23.33	45.41	46.1	40.19	39.67	33.44	40.67	26.13	11.28
Merged-chr2-5951041-3	chr2	5950947	5951147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-422.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	66.22	46.53	74.16	59.93	79.78	75.26	35.21	62.61	119.78	107.95	112.56	46.05
Merged-chr12-59131826-1	chr12	59131726	59131926	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	373.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	17.36	22.64	35.94	17.29	27.41	19.76	17.27	24.11	23.6	34.65	21.1	23.18
Merged-chr3-79234250-3	chr3	79234143	79234343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21324.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	19.79	32.7	54.19	62.74	32.73	19.76	34.55	46.79	36.78	12.05	43.21	28.19
Merged-chr15-57793177-3	chr15	57793015	57793215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	98448.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	27.05	25.15	31.38	24.53	15.14	25.09	19.6	32.41	34.22	32.13	33.67	21.93
Merged-chr13-34667403-3	chr13	34667301	34667501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105041)	TTS (NR_105041)	14478.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	28.27	21.38	30.8	32.98	31.91	28.85	19.6	31.4	25.57	21.09	36.68	20.36
Merged-chr5-135613046-3	chr5	135612941	135613141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19613.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	35.13	30.94	67.31	86.47	100.23	94.07	141.5	137.22	66.68	64.77	70.85	50.44
Merged-chr1-97580411-3	chr1	97580302	97580502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	81274.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	24.23	37.98	36.51	32.18	32.73	58.95	16.28	35.41	55.86	45.19	35.68	25.06
Merged-chr7-122206335-3	chr7	122206239	122206439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13157.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	71.88	50.05	59.9	40.22	48.27	50.17	31.22	56.92	60.58	52.22	86.43	51.06
Merged-chr1-95590283-3	chr1	95590178	95590378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	77316.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	79.55	77.72	78.15	93.71	65.87	95.64	48.16	92.38	100.11	112.47	101.5	77.69
Merged-chr8-94811960-3	chr8	94811861	94812061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011332)	TTS (NM_011332)	1508.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	34.32	32.7	46.21	33.78	24.96	32.93	34.21	52.49	46.42	40.17	58.29	29.13
Merged-chr17-71250881-3	chr17	71250782	71250982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46228.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	24.63	19.37	33.66	37.4	44.59	93.13	75.07	82.43	34.22	39.67	41.71	22.24
Merged-chr7-43921303-3	chr7	43921194	43921394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12477.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	37.15	36.72	37.08	40.62	47.05	70.87	44.51	60.45	94.21	68.79	99.99	42.6
Merged-chr8-26885510-3	chr8	26885390	26885590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61067.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	14.54	30.18	23.96	26.14	29.05	31.98	40.86	48.5	30.09	36.65	36.68	18.17
Merged-chr3-96219788-3	chr3	96219711	96219911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-105.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	54.92	40.5	58.19	41.43	35.18	60.21	22.26	46.96	74.35	71.8	59.8	37.59
Merged-chr9-119357525-3	chr9	119357405	119357605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199568, exon 1 of 20)	5' UTR (NM_001199568, exon 1 of 20)	124.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	62.99	73.45	63.89	65.96	87.14	79.65	52.82	65.72	90.67	108.96	117.08	67.04
Merged-chr4-128619190-3	chr4	128619105	128619305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-586.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	61.38	49.3	78.15	58.72	55.64	46.72	20.93	32.8	53.5	36.65	49.24	41.66
Merged-chr17-47523580-3	chr17	47523475	47523675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	18524.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	16.15	26.91	17.68	24.53	24.14	22.89	18.6	29.5	19.87	18.58	26.63	13.78
Merged-chr10-37112888-3	chr10	37112781	37112981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26045.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	22.61	19.62	38.79	40.62	22.5	24.46	21.59	29.19	47.4	35.15	40.2	19.42
Merged-chr9-15357778-3	chr9	15357674	15357874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176976)	promoter-TSS (NM_176976)	14.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	159.1	143.37	156.88	164.9	182.87	179.36	136.19	191.89	246.06	247.54	332.64	134.7
Merged-chr16-96192270-3	chr16	96192148	96192348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001492)	promoter-TSS (NM_001001492)	9.0	NM_001001492	385668.0	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	41.99	45.78	74.16	55.5	67.91	71.49	41.52	70.96	95.2	84.35	111.55	51.69
Merged-chr8-25016193-1	chr8	25016093	25016293	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	MIRc|SINE|MIR	729.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	5.25	4.02	11.41	6.44	5.32	10.35	3.99	12.7	17.9	15.06	7.03	13.78
Merged-chr6-49013174-3	chr6	49013070	49013270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13554.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	18.17	17.61	23.96	14.48	18.41	32.3	23.25	26.89	45.83	25.11	28.64	17.23
Merged-chr8-111536523-3	chr8	111536426	111536626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-114.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	16.96	26.16	29.09	22.52	25.77	32.3	15.28	20.89	29.31	28.12	35.68	17.86
Merged-chr1-86406497-3	chr1	86406397	86406597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17136.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	44.01	23.9	59.33	45.05	48.27	39.51	39.53	64.51	46.42	37.16	53.77	31.64
Merged-chr2-26916411-3	chr2	26916307	26916507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-14.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	48.86	40.5	46.78	35.39	67.5	74.0	26.91	46.32	64.91	67.78	64.32	38.22
Merged-chr17-87107370-3	chr17	87107268	87107468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-311.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	163.54	165.51	173.42	169.33	144.0	210.41	134.2	161.66	229.73	241.01	316.56	128.13
Merged-chr13-38528003-3	chr13	38527924	38528124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289599)	promoter-TSS (NM_001289599)	-110.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	44.42	33.7	34.8	57.51	60.55	45.47	62.12	59.36	51.14	47.2	94.47	40.1
Merged-chr8-46789608-3	chr8	46789495	46789695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	49850.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	53.3	30.69	49.63	61.54	68.73	58.64	34.21	68.66	53.5	53.73	52.26	37.91
Merged-chr3-116085671-1	chr3	116085571	116085771	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44017.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.65	2.26	5.7	4.02	2.45	4.08	14.95	14.27	3.34	2.01	1.0	2.82
Merged-chr9-108290362-3	chr9	108290253	108290453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-104.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	64.61	54.58	70.17	60.33	55.23	74.94	56.47	72.67	84.97	65.27	119.09	44.17
Merged-chr18-84589752-4	chr18	84589664	84589864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-260.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	29.88	22.64	23.96	28.96	45.41	40.14	27.9	30.9	59.2	66.28	68.84	31.33
Merged-chr1-82316587-3	chr1	82316479	82316679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029777)	promoter-TSS (NM_029777)	0.0	NM_029777	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	81.97	79.48	104.39	115.83	111.69	97.52	118.59	139.23	106.21	122.01	154.76	111.52
Merged-chr7-41393395-3	chr7	41393320	41393520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-41.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	54.92	42.51	67.31	62.74	78.55	85.92	46.84	83.78	96.38	91.89	150.24	58.58
Merged-chr11-100344506-3	chr11	100344407	100344607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	10100.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	88.84	52.07	67.31	56.31	100.23	89.37	56.47	53.07	79.07	95.4	76.38	49.5
Merged-chr8-75213106-3	chr8	75213032	75213232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-812.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	53.7	39.99	46.21	55.1	89.18	57.7	60.12	85.96	74.94	57.74	95.47	42.6
Merged-chr8-8661352-3	chr8	8661252	8661452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010111)	promoter-TSS (NM_010111)	-579.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	31.09	34.96	42.78	46.66	45.41	55.5	46.17	67.43	54.48	61.76	79.89	37.91
Merged-chr10-17522336-3	chr10	17522227	17522427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200901.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	53.3	44.52	42.78	67.57	52.37	59.27	47.5	55.51	61.17	69.29	52.76	29.76
Merged-chr1-4785710-3	chr1	4785618	4785818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	8.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	83.59	79.99	114.66	119.05	97.37	112.57	79.72	107.72	128.04	140.59	149.24	78.32
Merged-chr3-97232531-3	chr3	97232412	97232612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5148.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	73.49	64.64	79.86	87.28	94.91	100.66	49.16	71.64	94.41	98.41	128.13	55.76
Merged-chr1-170953393-3	chr1	170953289	170953489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22682.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	46.03	19.12	50.2	34.99	60.55	46.41	51.49	67.32	50.75	66.78	50.75	40.1
Merged-chr11-83577229-3	chr11	83577126	83577326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011338, intron 1 of 3)	intron (NM_011338, intron 1 of 3)	1410.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	35.94	28.42	35.94	34.19	49.91	47.04	54.81	39.79	17.11	21.09	32.16	34.77
Merged-chr11-29247406-3	chr11	29247294	29247494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025740)	promoter-TSS (NM_025740)	-122.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	153.85	154.19	140.9	159.67	186.55	214.17	137.85	201.73	252.15	220.42	339.18	141.91
Merged-chr6-89632496-3	chr6	89632388	89632588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11500.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	64.61	60.87	63.89	66.77	46.23	63.97	34.55	70.65	62.15	58.24	87.93	50.75
Merged-chr4-126541039-3	chr4	126540925	126541125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7567.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	38.36	29.68	49.06	29.76	60.96	44.84	28.57	50.86	50.75	54.73	33.67	33.21
Merged-chr15-27709453-3	chr15	27709370	27709570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27928.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	31.5	39.24	59.33	38.21	61.37	68.36	37.87	60.39	47.99	66.78	84.42	34.15
Merged-chr1-93069480-3	chr1	93069371	93069571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	13009.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	73.89	67.16	74.16	58.72	47.87	63.66	46.5	63.08	87.72	46.7	91.45	59.52
Merged-chr7-111083151-3	chr7	111083052	111083252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040131)	promoter-TSS (NM_001040131)	-122.0	NM_013507	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	251.97	252.03	191.1	204.32	243.01	255.88	184.69	229.96	260.02	271.64	307.02	178.25
Merged-chr8-84687865-3	chr8	84687763	84687963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	-1.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	43.21	25.91	31.95	35.8	37.64	51.43	29.23	33.31	40.52	25.61	38.19	27.88
Merged-chr6-38975035-3	chr6	38974929	38975129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	56043.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	54.92	61.62	60.47	79.23	53.59	70.87	77.73	77.64	54.48	54.23	71.86	60.46
Merged-chr2-136936602-2	chr2	136936494	136936694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37243.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	18.98	12.83	29.09	8.04	38.46	25.71	24.25	33.25	39.93	42.18	51.25	19.42
Merged-chr17-10840292-3	chr17	10840194	10840394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	-65.0	NM_001317726	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	194.23	234.42	217.91	227.65	235.64	245.84	149.48	211.63	335.35	325.87	342.19	177.62
Merged-chr17-27858272-3	chr17	27858153	27858353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080769, intron 1 of 20)	RSINE1|SINE|B4	1746.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	16.96	33.96	32.52	17.29	30.27	36.06	13.29	26.64	33.63	27.62	23.62	20.99
Merged-chr11-120071265-3	chr11	120071171	120071371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009734, intron 13 of 25)	intron (NM_009734, intron 13 of 25)	15556.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	27.86	28.17	46.78	48.26	40.09	26.97	21.26	38.75	26.75	23.1	44.72	27.25
Merged-chr17-32113687-3	chr17	32113567	32113767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22244.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	39.17	24.15	34.23	16.49	49.5	75.88	53.48	93.51	87.13	82.35	97.98	59.83
Merged-chr5-143990259-3	chr5	143990165	143990365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177682, intron 14 of 14)	intron (NM_177682, intron 14 of 14)	24588.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	46.03	40.75	65.6	49.47	49.5	51.11	48.16	59.69	55.07	47.7	79.39	51.06
Merged-chr17-34347775-3	chr17	34347672	34347872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3127.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	155.06	152.68	140.9	125.08	128.87	140.17	69.09	69.11	154.4	147.62	160.29	103.06
Merged-chr7-27490838-3	chr7	27490738	27490938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018820)	TTS (NM_018820)	3885.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	136.08	154.69	144.33	187.83	168.14	172.15	167.41	171.51	222.45	209.88	301.49	132.83
Merged-chr9-40784205-3	chr9	40784117	40784317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133733)	TTS (NM_133733)	-17056.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	46.84	39.99	41.07	54.3	35.59	38.88	32.22	40.07	52.91	43.18	68.84	25.37
Merged-chr5-4530897-2	chr5	4530810	4531010	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227306.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	12.92	10.82	5.7	4.02	38.05	33.55	31.22	37.35	47.99	53.22	50.75	29.45
Merged-chr13-83523802-1	chr13	83523702	83523902	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	146.0	NM_001347573	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	1.21	3.27	10.27	4.02	4.09	3.14	12.29	8.02	6.88	0.0	2.51	3.76
Merged-chr13-43765435-3	chr13	43765335	43765535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19677.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	182.92	146.89	197.95	160.08	200.46	201.31	145.82	159.37	184.89	188.29	217.07	115.28
Merged-chr14-50357802-3	chr14	50357714	50357914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205819)	promoter-TSS (NM_205819)	-100.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	30.28	22.89	23.39	32.58	25.36	19.76	11.63	49.09	59.01	54.73	49.24	43.54
Merged-chr2-128700919-1	chr2	128700819	128701019	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2004.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.63	2.52	2.85	2.41	2.86	4.39	7.97	8.38	7.67	4.02	3.52	3.45
Merged-chr11-116592604-3	chr11	116592539	116592739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	20.19	29.93	33.09	19.31	37.23	30.73	16.61	26.92	36.39	39.16	36.68	20.68
Merged-chr13-13889629-3	chr13	13889544	13889744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65030.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	80.36	40.5	67.88	40.62	74.87	95.01	52.15	69.03	84.97	85.86	55.78	39.47
Merged-chr11-89004001-2	chr11	89003862	89004062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	4559.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	12.92	13.33	21.11	12.07	17.18	25.09	13.95	14.05	9.24	12.55	9.55	8.46
Merged-chr3-88951095-3	chr3	88950983	88951183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-801.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	21.0	21.13	26.81	22.52	33.14	45.47	26.57	18.28	30.88	45.69	41.71	22.24
Merged-chr4-59363246-3	chr4	59363140	59363340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75393.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	62.18	41.75	73.59	58.32	58.09	64.91	63.11	93.36	49.37	49.71	54.27	42.6
Merged-chr3-106545761-3	chr3	106545662	106545862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1863.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	34.73	37.98	35.94	24.94	37.64	55.5	48.83	32.5	70.02	70.8	59.8	44.8
Merged-chr9-45299441-3	chr9	45299320	45299520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19680.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	102.97	82.0	67.31	61.94	80.59	128.25	67.43	56.44	132.17	126.03	127.63	52.94
Merged-chr2-71389636-3	chr2	71389534	71389734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026115, intron 1 of 10)	intron (NM_026115, intron 1 of 10)	374.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	32.3	41.5	23.39	37.4	29.05	44.84	25.91	28.91	55.86	40.67	78.89	26.94
Merged-chr9-35055845-3	chr9	35055741	35055941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-60887.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	38.76	24.15	47.35	48.26	36.41	38.26	44.51	61.04	44.25	46.7	67.33	26.31
Merged-chr5-140116184-3	chr5	140116078	140116278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58740.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	87.22	61.88	102.68	89.69	90.41	93.76	82.38	93.7	84.77	88.87	107.03	49.5
Merged-chr14-26970599-3	chr14	26970504	26970704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145221)	promoter-TSS (NM_145221)	-53.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	196.65	164.0	229.89	195.47	211.51	230.48	165.42	212.22	223.04	204.36	314.05	143.79
Merged-chr10-42761498-3	chr10	42761395	42761595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153055)	promoter-TSS (NM_153055)	-1.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	99.33	75.21	74.16	68.37	110.87	130.45	44.84	67.54	125.09	146.11	149.74	52.63
Merged-chr8-71294216-3	chr8	71294100	71294300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	21486.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	25.44	18.86	25.1	28.56	55.64	49.86	39.53	54.48	34.03	17.07	18.59	23.18
Merged-chr17-64332160-3	chr17	64332048	64332248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144859)	promoter-TSS (NM_144859)	-265.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	455.08	484.69	476.9	549.81	560.06	608.64	496.6	601.32	725.78	797.85	991.4	468.96
Merged-chr6-92940994-1	chr6	92940894	92941094	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	412.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.23	1.01	0.0	3.22	18.41	21.95	25.91	27.53	0.79	0.0	0.5	0.0
Merged-chr13-52236346-3	chr13	52236235	52236435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139594.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	77.12	61.37	101.54	116.64	92.05	82.16	73.41	88.85	88.31	69.29	115.07	62.97
Merged-chrX-21522680-3	chrX	21522599	21522799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38075.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	25.04	28.67	25.1	31.37	25.77	30.73	16.61	27.84	37.17	41.17	37.18	20.36
Merged-chr11-94602032-3	chr11	94601918	94602118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-232.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	32.3	26.66	36.51	29.36	43.36	54.25	37.2	60.08	43.86	40.67	79.89	34.77
Merged-chr7-43353335-3	chr7	43353253	43353453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145581, intron 5 of 9)	intron (NM_145581, intron 5 of 9)	2012.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	80.36	77.47	104.96	143.59	96.14	98.78	99.32	103.82	89.49	102.43	111.05	63.59
Merged-chr11-75732805-3	chr11	75732726	75732926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009536)	promoter-TSS (NM_009536)	-61.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	81.16	83.76	73.59	71.19	91.23	90.94	47.83	82.88	105.42	82.85	77.38	55.45
Merged-chr4-128980545-3	chr4	128980465	128980665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31A|LTR|ERV1	-12659.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	52.09	33.45	52.48	42.63	49.91	57.7	48.83	57.95	60.19	39.16	45.73	32.89
Merged-chr10-77964216-3	chr10	77964102	77964302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	5670.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	56.13	78.73	112.95	115.83	100.23	70.55	108.62	102.59	127.45	71.8	169.84	79.26
Merged-chr5-66106125-3	chr5	66106024	66106224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7945.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	54.92	56.34	57.62	29.36	60.14	54.56	38.86	34.85	76.12	77.83	61.3	39.78
Merged-chr1-146968139-3	chr1	146968028	146968228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	470441.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	67.43	58.61	71.88	68.37	74.46	88.74	79.06	89.66	95.79	82.35	78.39	52.94
Merged-chr17-69085678-3	chr17	69085584	69085784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10007.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	28.67	41.0	34.23	19.31	16.77	44.53	19.27	15.06	38.16	43.68	41.71	20.05
Merged-chrX-106011901-3	chrX	106011816	106012016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190409)	promoter-TSS (NM_001190409)	-17.0	NM_025952	67075.0	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	106.2	84.26	95.27	93.31	108.41	127.31	126.89	95.75	134.53	144.1	140.7	78.0
Merged-chr3-21633980-3	chr3	21633876	21634076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-442676.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	22.61	18.86	24.53	24.53	30.27	17.87	34.21	42.0	29.9	32.13	55.27	38.53
Merged-chr1-86509604-3	chr1	86509527	86509727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16930.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	58.95	63.39	42.78	47.86	68.73	80.27	40.52	57.62	64.71	55.23	65.83	41.98
Merged-chr4-120825265-3	chr4	120825182	120825382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357194)	promoter-TSS (NM_001357194)	-73.0	NM_001357194	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	54.11	53.07	64.46	50.27	46.23	58.32	44.51	57.34	81.82	77.83	89.44	52.94
Merged-chr14-64943960-3	chr14	64943848	64944048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	ID4_|SINE|ID	5909.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	17.36	16.1	24.53	42.23	24.14	23.52	35.54	36.59	18.1	24.6	48.74	18.17
Merged-chr18-11352536-3	chr18	11352431	11352631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-280745.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	16.96	19.62	19.97	26.95	39.27	47.66	27.57	43.32	20.06	14.06	22.11	20.99
Merged-chr8-46844805-3	chr8	46844716	46844916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	105071.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	18.98	22.64	27.38	23.33	18.82	23.83	15.94	20.13	26.16	27.62	34.67	25.37
Merged-chr11-11781922-3	chr11	11781848	11782048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27014.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	46.44	26.66	35.37	33.38	32.32	47.04	24.91	53.05	36.39	42.18	37.69	29.13
Merged-chr17-48418435-3	chr17	48418342	48418542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009694)	TTS (NM_009694)	7992.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	47.24	20.12	29.09	28.56	35.59	31.36	31.89	34.46	39.93	20.59	36.18	26.31
Merged-chr1-138158596-3	chr1	138158524	138158724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	16502.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	51.28	55.84	62.75	42.23	52.37	98.78	57.47	46.29	58.42	67.78	51.76	19.11
Merged-chr17-83666760-3	chr17	83666659	83666859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34864.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	65.82	54.58	54.19	57.11	45.0	38.57	20.26	37.6	50.16	57.24	57.28	35.09
Merged-chr17-5935034-3	chr17	5934929	5935129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6251.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	77.53	62.38	39.93	43.84	96.55	58.32	52.82	83.5	66.87	56.74	80.4	23.18
Merged-chr12-111675281-3	chr12	111675169	111675369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2836.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	27.86	25.4	43.35	42.23	31.91	45.47	17.61	47.38	36.58	43.18	54.77	28.19
Merged-chr2-24345261-3	chr2	24345162	24345362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-29.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	82.78	72.69	56.48	72.4	67.5	86.23	51.15	58.18	94.21	116.99	105.02	48.87
Merged-chr10-89443931-3	chr10	89443827	89444027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	40.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	76.72	57.85	77.01	50.68	78.55	98.46	57.47	90.34	99.72	91.38	126.12	56.07
Merged-chr7-12478304-3	chr7	12478232	12478432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039951)	promoter-TSS (NM_001039951)	27.0	NM_026112	67370.0	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	40.38	46.28	51.91	61.94	76.09	65.85	38.2	82.29	69.04	46.19	110.04	42.6
Merged-chr4-117156058-3	chr4	117155981	117156181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	51.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	35.53	30.69	44.5	40.22	54.82	44.53	22.59	31.07	54.48	58.24	56.78	40.41
Merged-chr5-64885249-3	chr5	64885160	64885360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47439.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	19.38	24.9	33.66	18.1	29.86	36.69	32.55	38.92	28.13	31.63	39.7	31.01
Merged-chr9-124425136-3	chr9	124425031	124425231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027950)	TTS (NR_027950)	1344.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	83.59	73.19	79.29	80.04	88.37	97.83	47.17	67.12	118.41	116.99	81.4	62.65
Merged-chr9-21320723-3	chr9	21320621	21320821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	2.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	45.23	39.49	43.35	36.6	49.91	62.4	50.16	57.36	68.05	62.26	76.88	51.69
Merged-chr9-4319551-3	chr9	4319469	4319669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164574, intron 2 of 2)	intron (NM_001164574, intron 2 of 2)	9753.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	33.52	28.42	38.22	50.68	29.46	73.06	44.84	68.75	54.68	56.74	96.98	32.58
Merged-chr17-70967812-3	chr17	70967712	70967912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22704.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	94.08	90.8	103.82	88.08	88.37	132.95	109.62	106.71	136.3	113.98	174.86	76.44
Merged-chr12-75818269-3	chr12	75818194	75818394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-24.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	56.53	53.58	42.78	42.23	69.55	71.18	46.84	64.93	80.25	63.77	105.02	54.2
Merged-chr4-129068278-3	chr4	129068186	129068386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10015.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	61.78	74.7	62.18	36.2	79.78	96.89	49.16	27.79	105.82	112.97	77.88	40.1
Merged-chr6-115676598-3	chr6	115676493	115676693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356334)	promoter-TSS (NM_001356334)	42.0	NM_001356333	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	97.72	114.45	109.53	93.71	113.32	144.56	82.38	86.64	148.7	141.09	192.45	83.96
Merged-chr9-116077653-3	chr9	116077560	116077760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	97703.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	23.02	20.88	23.39	20.11	21.27	28.22	29.23	20.38	32.26	19.08	34.67	19.42
Merged-chr11-107323436-3	chr11	107323354	107323554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134073.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	41.19	37.48	35.94	35.39	67.91	64.6	40.86	48.62	71.99	53.73	99.99	31.01
Merged-chr12-108269813-1	chr12	108269713	108269913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159910, intron 1 of 5)	intron (NM_001159910, intron 1 of 5)	5604.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	23.82	18.61	17.68	22.93	4.09	1.88	4.32	3.39	2.16	1.0	7.03	3.13
Merged-chr13-56613724-3	chr13	56613631	56613831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	4145.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	22.61	20.12	29.09	32.58	36.0	35.43	27.24	36.87	33.63	26.61	64.82	21.62
Merged-chr8-121851143-3	chr8	121851026	121851226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21557.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	29.07	41.75	35.37	47.86	45.82	52.05	17.61	30.7	43.47	50.71	54.27	42.92
Merged-chr14-63123815-3	chr14	63123713	63123913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1351.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	68.65	52.82	62.75	64.35	78.96	96.27	95.33	82.37	120.18	105.94	118.59	83.96
Merged-chr4-9605617-3	chr4	9605525	9605725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177854, intron 3 of 11)	Tigger7|DNA|TcMar-Tigger	38092.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	90.45	108.66	136.34	133.13	153.82	130.76	108.29	152.3	135.12	126.03	124.62	93.67
Merged-chr6-34476225-3	chr6	34476128	34476328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-128.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	140.92	118.97	159.16	139.97	186.55	162.43	129.55	182.19	176.04	164.69	189.94	112.78
Merged-chr7-25688205-3	chr7	25688041	25688241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011577, exon 1 of 7)	exon (NM_011577, exon 1 of 7)	1139.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	17.36	20.88	14.83	15.28	14.32	26.97	16.61	14.8	18.69	19.08	20.1	10.65
Merged-chr13-9454550-3	chr13	9454445	9454645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178020.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	45.23	36.22	30.8	51.48	30.68	44.21	33.88	45.39	63.53	35.65	59.29	21.62
Merged-chr17-45573313-3	chr17	45573197	45573397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-36.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	85.2	74.96	73.59	79.64	87.55	87.8	31.56	47.86	99.92	100.42	99.49	85.21
Merged-chr13-60738640-3	chr13	60738523	60738723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	47741.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	23.82	20.63	14.26	23.33	26.18	33.24	18.27	29.97	35.99	32.64	47.74	33.83
Merged-chr7-140102356-3	chr7	140102226	140102426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001286217, exon 1 of 6)	exon (NM_001286217, exon 1 of 6)	115.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	17.36	19.12	21.11	14.48	21.68	26.03	16.28	16.74	15.34	13.56	23.11	14.1
Merged-chr4-56070869-3	chr4	56070782	56070982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-538407.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	41.59	33.7	53.62	90.09	40.5	22.89	46.5	61.29	27.34	29.12	79.39	32.89
Merged-chr5-21786738-3	chr5	21786640	21786840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011188, exon 2 of 13)	exon (NM_011188, exon 2 of 13)	1457.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	39.17	39.74	35.37	29.36	53.59	52.05	24.58	42.14	54.48	56.24	81.4	52.32
Merged-chr2-48949336-3	chr2	48949228	48949428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	-61.0	NR_149356	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	195.44	209.27	252.14	199.89	254.46	319.84	197.64	280.94	351.48	350.47	448.21	239.02
Merged-chr8-33653135-1	chr8	33653035	33653235	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-103.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	14.13	10.82	8.56	11.26	13.5	15.99	18.6	15.79	35.99	28.12	34.67	20.36
Merged-chr13-101841439-3	chr13	101841332	101841532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73215.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	39.98	29.68	47.35	32.18	33.14	57.38	32.55	56.83	48.19	35.65	55.78	27.88
Merged-chr14-55697452-3	chr14	55697338	55697538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-15621.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	43.61	28.17	50.2	39.01	41.32	55.82	29.9	41.33	59.01	47.2	53.77	31.95
Merged-chr2-33918942-3	chr2	33918843	33919043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30997.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	21.8	16.85	18.83	18.5	101.05	72.44	53.81	70.26	96.18	96.91	140.19	53.88
Merged-chr16-91438243-3	chr16	91438124	91438324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26880.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	31.5	26.91	39.36	42.63	50.32	52.37	33.88	53.27	52.32	61.76	61.81	36.65
Merged-chr13-47014849-3	chr13	47014741	47014941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175340)	promoter-TSS (NM_175340)	9.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	45.63	41.0	34.8	31.77	38.05	54.88	26.57	38.24	58.22	55.23	61.81	42.6
Merged-chr13-60897522-3	chr13	60897409	60897609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145801)	promoter-TSS (NM_001145801)	-62.0	NM_001145801	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	98.53	82.0	130.63	149.22	102.28	111.0	90.68	120.73	122.34	113.48	168.83	91.16
Merged-chr5-135184645-3	chr5	135184562	135184762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2661.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	23.82	21.88	36.51	15.69	24.14	27.91	15.94	18.7	35.21	20.59	25.12	19.42
Merged-chr4-132945629-4	chr4	132945504	132945704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23053.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	20.59	23.9	25.67	15.69	18.41	29.16	18.93	17.41	32.26	41.67	18.59	19.74
Merged-chr11-11785711-3	chr11	11785608	11785808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23254.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	32.3	20.63	30.8	17.7	42.55	35.12	39.53	39.73	22.42	26.11	34.17	15.66
Merged-chr16-91478320-3	chr16	91478231	91478431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6884.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	26.25	19.87	40.5	28.96	29.86	40.45	32.55	25.04	32.85	23.6	58.29	26.31
Merged-chr18-67245686-5	chr18	67245530	67245730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357518, exon 1 of 11)	5' UTR (NM_001357518, exon 1 of 11)	200.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	14.94	13.58	11.41	10.05	12.27	10.98	21.26	16.29	20.06	18.58	26.63	19.74
Merged-chr15-65787146-3	chr15	65787055	65787255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356582, exon 1 of 23)	5' UTR (NM_001356582, exon 1 of 23)	135.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	103.78	135.57	139.76	118.65	108.0	128.88	163.76	148.32	117.82	129.54	158.78	86.77
Merged-chr9-20651991-3	chr9	20651901	20652101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-129.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	316.17	318.69	347.98	356.75	369.42	465.03	303.94	481.74	444.52	497.59	584.89	273.17
Merged-chr5-17876873-3	chr5	17876779	17876979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	L2|LINE|L2	12080.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	49.67	43.51	69.6	112.21	94.09	109.75	129.21	132.98	57.63	82.35	52.76	33.52
Merged-chr6-52699219-3	chr6	52699109	52699309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14520.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	33.11	34.96	40.5	44.64	33.14	25.4	25.91	38.78	42.48	39.67	47.74	20.05
Merged-chr10-83184124-3	chr10	83184019	83184219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	MIR|SINE|MIR	153698.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	15.75	17.36	38.79	37.4	31.09	26.97	29.23	34.37	20.85	9.54	21.1	16.29
Merged-chr5-150594602-3	chr5	150594507	150594707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133898)	promoter-TSS (NM_133898)	-82.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	77.53	91.56	84.43	85.27	59.73	100.66	99.32	69.9	60.97	74.31	86.93	33.52
Merged-chr14-20834305-3	chr14	20834211	20834411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2351.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	77.53	72.69	95.84	51.08	83.46	125.74	48.83	76.91	97.16	98.91	77.88	42.92
Merged-chr11-17001144-3	chr11	17001039	17001239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	RMER19C|LTR|ERVK	7579.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	52.49	34.21	62.75	51.48	60.14	52.68	49.83	58.77	61.96	53.22	60.3	28.82
Merged-chr5-110176922-3	chr5	110176793	110176993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	36.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	17.36	17.61	13.69	23.73	22.91	21.64	24.58	19.12	36.19	44.69	46.73	25.37
Merged-chr11-117947162-1	chr11	117947062	117947262	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22204.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	20.19	15.59	10.27	16.89	26.18	31.67	7.31	13.79	39.53	35.65	32.66	18.8
Merged-chr2-160873081-3	chr2	160872971	160873171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177263)	promoter-TSS (NM_177263)	-81.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	53.7	46.28	64.46	49.07	73.23	44.53	45.84	53.69	62.35	77.83	70.35	45.11
Merged-chr17-66077132-3	chr17	66077007	66077207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025572)	promoter-TSS (NM_001025572)	-61.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	123.16	94.07	139.19	92.1	114.14	127.31	71.08	136.12	198.65	179.25	213.56	125.62
Merged-chr10-54119458-3	chr10	54119333	54119533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43511.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	133.25	152.43	138.62	160.88	126.82	158.67	93.34	139.88	154.99	127.53	214.06	80.51
Merged-chr10-117941115-3	chr10	117941016	117941216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15657.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	20.19	17.61	25.67	18.5	36.0	37.94	22.92	28.6	40.71	44.69	46.23	23.18
Merged-chr6-55037975-3	chr6	55037851	55038051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_180678)	promoter-TSS (NM_180678)	-50.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	83.59	64.39	77.58	66.77	83.46	97.52	63.11	76.23	66.87	104.94	104.01	59.52
Merged-chr7-102210304-3	chr7	102210213	102210413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022979)	promoter-TSS (NM_022979)	-22.0	NM_001291358	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	188.17	229.65	183.12	191.45	212.73	272.18	228.2	192.45	252.94	259.59	301.49	160.39
Merged-chr18-63864420-1	chr18	63864320	63864520	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155725.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	3.63	3.52	5.7	3.62	6.55	4.7	11.63	12.08	0.98	2.51	4.52	2.51
Merged-chr17-35813373-3	chr17	35813282	35813482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8331.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	69.45	57.85	70.17	51.88	86.73	71.81	52.82	52.82	66.28	57.24	74.87	42.6
Merged-chr12-83597221-3	chr12	83597118	83597318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183154)	promoter-TSS (NM_183154)	4.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	125.58	107.15	104.39	164.1	149.32	164.31	95.33	147.59	147.71	128.54	185.42	109.02
Merged-chr4-46077050-3	chr4	46076947	46077147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021883, intron 2 of 9)	intron (NM_021883, intron 2 of 9)	37825.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	25.04	14.09	42.78	32.18	43.77	50.8	62.45	79.26	20.26	22.09	41.2	19.42
Merged-chr8-107552458-3	chr8	107552343	107552543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025830, intron 17 of 23)	intron (NM_025830, intron 17 of 23)	1199.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	56.94	40.75	42.78	15.28	31.91	38.26	24.91	44.92	52.52	35.15	53.77	22.56
Merged-chr11-106487877-3	chr11	106487778	106487978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-82.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	141.73	100.11	122.08	114.22	132.96	122.29	62.78	97.96	139.45	119.0	169.84	86.77
Merged-chr4-105162850-3	chr4	105162737	105162937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	MIRc|SINE|MIR	5490.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	21.4	24.9	43.35	42.23	21.27	21.32	18.27	30.28	20.85	28.62	35.17	22.24
Merged-chr17-26939652-3	chr17	26939564	26939764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026307)	promoter-TSS (NM_026307)	-126.0	NM_026307	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	224.11	247.25	211.64	213.97	220.1	349.32	220.89	231.87	289.72	321.35	297.47	170.73
Merged-chr19-4121578-3	chr19	4121478	4121678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-3.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	98.12	104.38	91.84	87.28	92.46	136.72	37.54	45.76	106.01	115.99	101.5	58.58
Merged-chr7-12803631-3	chr7	12803541	12803741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026046)	TTS (NM_026046)	15219.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	22.61	21.88	26.24	23.33	22.09	33.55	32.88	49.35	35.21	47.7	36.68	27.57
Merged-chr2-151973488-3	chr2	151973385	151973585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-91.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	12.52	5.03	23.96	22.12	25.36	20.07	16.61	22.46	17.11	19.58	43.72	17.23
Merged-chr3-10342716-3	chr3	10342633	10342833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025512, intron 6 of 7)	RLTR20D|LTR|ERVK	-7077.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	75.51	70.93	70.74	71.99	83.46	99.72	79.39	82.32	99.72	80.84	111.05	46.05
Merged-chr17-5814064-3	chr17	5813971	5814171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14581.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	44.42	45.02	54.19	41.02	60.14	46.72	49.49	62.55	42.88	39.67	37.69	35.71
Merged-chr19-46506517-3	chr19	46506413	46506613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4865.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	26.65	20.12	25.1	30.16	44.18	29.48	26.57	31.93	22.42	16.07	52.76	20.05
Merged-chrX-12543875-3	chrX	12543790	12543990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-43869.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	22.21	25.15	31.95	30.16	37.23	40.45	15.28	36.7	45.24	44.19	61.81	23.81
Merged-chr2-131909915-3	chr2	131909816	131910016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011170)	promoter-TSS (NM_011170)	-12.0	NM_011170	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	64.61	53.07	61.04	47.46	78.96	90.0	54.48	55.43	75.72	87.37	102.0	56.7
Merged-chr3-127769383-3	chr3	127769295	127769495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	11132.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	132.85	115.7	122.65	153.64	128.87	176.23	128.22	156.17	143.39	145.61	168.33	94.61
Merged-chr2-22774348-3	chr2	22774246	22774446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	19.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	33.11	30.69	30.23	37.81	24.14	41.08	22.26	35.86	38.55	40.67	61.3	25.37
Merged-chr2-28582840-3	chr2	28582773	28582973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290484, exon 1 of 12)	exon (NM_001290484, exon 1 of 12)	406.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	19.38	27.17	13.69	20.51	17.18	36.06	20.93	13.09	24.78	41.17	28.14	25.06
Merged-chr7-68692889-3	chr7	68692771	68692971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56367.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	61.78	84.76	59.9	31.77	47.87	61.15	43.18	23.58	61.17	78.33	70.35	24.75
Merged-chr10-12841656-1	chr10	12841556	12841756	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	B4A|SINE|B4	20079.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.62	4.78	3.42	4.83	3.27	1.25	3.99	9.14	5.51	3.51	2.01	5.64
Merged-chr15-97942760-3	chr15	97942677	97942877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21452.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	30.69	25.4	38.79	18.5	37.64	35.43	22.92	29.24	40.12	45.19	29.65	25.69
Merged-chr10-49074923-1	chr10	49074823	49075023	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	713014.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.81	4.02	0.0	1.61	19.23	16.62	17.61	19.26	3.93	9.54	12.06	3.45
Merged-chr14-67272534-3	chr14	67272428	67272628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	37884.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	29.07	35.47	28.52	44.64	41.32	50.8	30.56	40.12	47.8	46.19	54.77	18.8
Merged-chr12-110606348-3	chr12	110606244	110606444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030238, intron 1 of 76)	Lx7|LINE|L1	4949.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	21.0	19.87	30.23	22.93	28.64	29.79	11.29	27.31	44.25	32.13	42.71	17.86
Merged-chr15-97816816-1	chr15	97816716	97816916	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1953.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	1.62	1.51	0.0	0.4	21.27	15.05	20.93	24.28	4.72	5.02	8.54	8.14
Merged-chr14-63130827-3	chr14	63130717	63130917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8355.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	35.13	46.03	55.9	46.66	54.41	63.97	49.49	72.22	66.87	68.29	73.36	40.72
Merged-chr7-105640402-3	chr7	105640262	105640462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	54.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	151.83	151.92	133.49	163.29	171.41	176.54	140.51	187.85	200.43	168.71	219.08	124.05
Merged-chr19-46057154-3	chr19	46057049	46057249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346801, intron 1 of 13)	CpG	610.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	34.32	31.44	22.82	27.35	37.23	36.37	23.92	30.31	41.11	41.67	35.17	39.47
Merged-chr4-95688338-3	chr4	95688229	95688429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108908.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	45.63	48.54	57.62	61.94	54.41	45.15	38.2	62.94	61.96	36.15	65.83	39.47
Merged-chr14-76097444-3	chr14	76097352	76097552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026177, intron 6 of 7)	intron (NM_026177, intron 6 of 7)	13363.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	44.82	29.18	54.19	43.84	68.73	47.66	77.4	85.6	44.84	43.68	57.79	32.89
Merged-chr6-91706263-3	chr6	91706164	91706364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	22197.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	50.88	53.83	51.34	47.46	51.55	85.29	29.9	47.92	78.48	89.37	89.94	34.15
Merged-chr3-87566304-3	chr3	87566189	87566389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40711.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	14.94	18.61	13.12	20.51	30.27	33.24	41.52	40.49	93.62	123.52	137.18	58.27
Merged-chr7-24316724-3	chr7	24316614	24316814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199321)	promoter-TSS (NM_001199321)	-48.0	NM_001199321	22756.0	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	66.22	72.69	90.7	113.82	82.64	78.08	58.79	102.59	104.24	94.9	143.71	75.18
Merged-chr7-16406195-3	chr7	16406113	16406313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	5017.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	25.44	20.88	43.35	39.82	32.73	39.2	42.19	51.67	39.34	42.18	53.77	27.57
Merged-chr19-29385121-3	chr19	29385022	29385222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 6 of 6)	intron (NM_021893, intron 6 of 6)	17684.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	58.95	40.5	53.05	41.83	56.46	101.28	59.13	46.93	79.66	95.4	94.47	41.66
Merged-chr11-121804840-1	chr11	121804740	121804940	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25378.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.06	1.26	2.85	5.63	15.55	19.76	4.32	14.92	10.62	15.57	7.54	8.46
Merged-chr12-80331700-3	chr12	80331607	80331807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59970.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	27.86	27.67	33.66	24.94	34.77	26.34	22.26	35.44	42.68	36.15	40.2	33.52
Merged-chrX-7762641-3	chrX	7762550	7762750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271490)	promoter-TSS (NM_001271490)	-11.0	NM_001271489	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	119.52	131.05	117.51	118.65	260.19	360.3	225.21	215.05	193.93	175.74	228.13	113.72
Merged-chr2-120850578-3	chr2	120850459	120850659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038349)	promoter-TSS (NR_038349)	25.0	NM_080788	140810.0	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	149.81	138.34	159.73	146.8	168.55	201.94	107.96	148.49	114.08	111.97	179.89	78.94
Merged-chr7-102565493-3	chr7	102565390	102565590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009277)	promoter-TSS (NM_009277)	-8.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	67.43	58.35	63.32	76.42	94.09	81.84	59.79	92.75	81.23	74.81	127.63	44.8
Merged-chr10-59323255-3	chr10	59323146	59323346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-50.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	214.01	183.11	212.21	170.13	208.23	279.08	181.7	175.74	220.88	199.84	285.91	159.14
Merged-chr1-171114090-3	chr1	171113987	171114187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7574.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	39.98	45.53	31.95	43.04	79.37	47.35	47.83	56.52	80.05	66.78	76.38	31.33
Merged-chr16-12032674-3	chr16	12032588	12032788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	48575.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	51.69	49.3	56.48	68.37	49.09	30.1	55.14	82.12	76.71	76.32	81.4	38.85
Merged-chr7-127841613-3	chr7	127841502	127841702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-206.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	80.36	80.99	116.37	80.04	95.32	149.89	121.57	128.94	153.42	137.58	230.14	105.88
Merged-chr8-77442597-3	chr8	77442460	77442660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-74496.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	50.47	72.69	51.91	67.57	58.91	78.08	65.77	60.08	78.48	69.29	74.87	43.86
Merged-chr2-31141988-3	chr2	31141880	31142080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177649)	promoter-TSS (NM_001177649)	28.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	24.63	28.42	31.95	19.31	35.18	39.2	19.93	17.64	31.67	31.13	37.18	23.18
Merged-chr14-66147768-3	chr14	66147677	66147877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144803, intron 5 of 6)	intron (NM_144803, intron 5 of 6)	6817.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	43.21	43.51	37.65	27.75	40.91	58.64	32.22	37.12	65.3	61.26	47.74	27.25
Merged-chr4-141269283-3	chr4	141269170	141269370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9169.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	86.41	67.16	93.55	82.45	77.32	116.96	75.73	70.18	97.95	90.38	128.64	50.12
Merged-chr12-112897625-3	chr12	112897528	112897728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	22913.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	87.62	77.22	110.67	77.62	72.0	100.34	67.43	60.39	71.99	71.3	69.34	48.87
Merged-chr7-13278726-3	chr7	13278629	13278829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010715)	promoter-TSS (NM_010715)	-8.0	NM_177312	321008.0	Mm.458832	NM_177312	ENSMUSG00000070814	Zswim9	6330408A02Rik	zinc finger SWIM-type containing 9	protein-coding	90.85	93.32	91.84	92.91	118.64	131.39	118.59	116.69	132.37	130.55	168.33	79.26
Merged-chr3-149394025-3	chr3	149393929	149394129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119292.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	25.44	12.83	42.21	24.53	36.41	33.55	21.92	54.42	64.32	62.26	70.35	32.27
Merged-chr13-63007650-3	chr13	63007577	63007777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 1 of 15)	L1_Mus3|LINE|L1	42784.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	44.82	39.24	71.31	59.53	58.5	56.44	37.87	24.84	60.97	49.21	72.36	41.35
Merged-chr10-34089640-3	chr10	34089540	34089740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162937, intron 4 of 6)	intron (NM_001162937, intron 4 of 6)	6879.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	29.88	25.15	17.68	37.4	34.77	23.52	14.62	26.27	24.0	8.54	23.62	15.04
Merged-chr15-59653043-3	chr15	59652967	59653167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4413.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	50.47	41.25	37.65	51.08	61.37	94.07	53.48	66.11	76.51	80.84	68.84	41.35
Merged-chrY-1293874-3	chrY	1293770	1293970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7257.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	30.69	21.13	40.5	34.99	30.27	35.43	38.2	48.17	38.75	29.12	43.21	26.0
Merged-chr7-30419640-3	chr7	30419556	30419756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011827, intron 1 of 3)	intron (NM_011827, intron 1 of 3)	198.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	50.07	56.09	69.6	41.83	61.37	69.3	77.06	47.27	80.05	62.26	93.96	48.87
Merged-chr7-25632886-3	chr7	25632795	25632995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007533, intron 5 of 8)	MIRc|SINE|MIR	5271.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	44.42	46.28	46.78	39.82	92.46	94.07	86.03	90.0	42.29	54.73	39.7	30.39
Merged-chr18-65502918-3	chr18	65502735	65502935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	RLTR19-int|LTR|ERVK	71838.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	12.92	11.82	13.69	28.96	15.96	18.19	16.61	16.65	11.01	12.05	17.08	12.53
Merged-chr5-65832395-3	chr5	65832279	65832479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31190.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	102.97	80.24	110.67	71.59	93.28	134.84	74.07	92.24	119.19	145.61	127.13	86.77
Merged-chr5-43847725-3	chr5	43847636	43847836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21073.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	35.53	29.68	37.65	41.43	78.96	63.97	60.12	68.94	35.21	51.21	52.76	20.68
Merged-chr15-98677587-3	chr15	98677483	98677683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172612)	promoter-TSS (NM_172612)	-122.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	112.26	124.51	124.36	82.85	134.19	175.29	104.3	88.32	189.02	152.14	182.9	82.39
Merged-chr6-112947340-3	chr6	112947223	112947423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080448)	promoter-TSS (NM_080448)	-57.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	56.13	45.53	64.46	70.38	71.18	75.26	31.89	87.31	66.68	53.73	76.38	37.28
Merged-chr15-103239957-3	chr15	103239880	103240080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-128.0	NM_001076789	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	86.41	83.51	104.96	92.91	90.82	126.68	54.14	80.3	137.88	163.18	126.63	81.76
Merged-chr17-29399381-3	chr17	29399284	29399484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38470.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	45.23	35.47	43.35	29.36	30.68	73.38	46.5	40.01	56.06	63.27	88.94	28.19
Merged-chr12-117481192-3	chr12	117481091	117481291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35288.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	223.7	234.93	213.92	239.31	243.01	322.04	185.68	202.43	309.78	313.82	357.77	180.75
Merged-chr7-16098476-3	chr7	16098382	16098582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-98.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	235.41	224.87	221.91	249.36	265.1	290.68	236.51	240.65	290.7	299.76	357.77	176.37
Merged-chr11-69759498-3	chr11	69759386	69759586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-853.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	20.59	32.2	36.51	12.07	33.96	47.98	23.58	18.03	46.22	50.71	30.15	23.49
Merged-chr13-94298621-3	chr13	94298496	94298696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-12765.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	41.99	33.45	58.76	53.49	52.77	61.15	47.17	77.72	57.83	50.21	58.29	46.05
Merged-chr2-43727826-3	chr2	43727735	43727935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20989.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	28.27	21.63	20.54	21.32	46.64	30.42	35.87	31.01	32.26	15.57	43.21	15.66
Merged-chr3-97995011-3	chr3	97994889	97995089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18549.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	36.75	25.4	65.6	30.16	44.59	36.69	54.14	57.39	31.27	27.11	52.76	19.11
Merged-chr1-180641401-3	chr1	180641328	180641528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001103182, intron 1 of 14)	CpG	278.0	NR_120498	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	25.84	30.94	15.97	27.35	29.86	28.85	37.2	24.11	25.77	32.64	16.58	19.42
Merged-chr10-42478620-3	chr10	42478627	42478827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-162.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	17.36	17.61	7.99	14.48	18.0	23.2	11.96	23.75	58.81	37.16	64.82	32.58
Merged-chr1-178342806-3	chr1	178342743	178342943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	-5028.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	60.17	79.23	63.89	80.04	34.77	52.05	56.14	77.86	107.2	94.4	121.6	66.41
Merged-chr8-22699615-3	chr8	22699511	22699711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	6972.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	16.56	16.6	26.81	15.69	18.41	43.27	33.88	31.99	32.85	33.14	32.66	18.48
Merged-chr15-79927837-3	chr15	79927761	79927961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144811, intron 2 of 6)	CpG	4785.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	29.48	26.66	26.81	26.95	30.27	39.51	29.9	31.99	24.78	30.13	26.63	18.8
Merged-chr1-151250916-3	chr1	151250773	151250973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-93613.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	46.44	51.81	48.49	55.5	60.14	73.06	67.76	76.12	85.76	76.32	90.45	41.35
Merged-chr15-59599060-3	chr15	59598959	59599159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-49595.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	29.48	25.15	31.38	43.04	51.55	47.98	36.87	56.13	47.99	56.74	62.81	28.19
Merged-chr6-5103977-3	chr6	5103889	5104089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89957.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	29.48	33.7	39.93	49.47	50.73	37.0	37.54	68.1	54.48	31.63	72.86	36.03
Merged-chr6-77335745-1	chr6	77335645	77335845	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145732, intron 8 of 18)	ORR1E|LTR|ERVL-MaLR	46730.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	2.42	6.79	5.7	8.45	20.05	21.01	17.94	35.19	4.52	8.03	4.52	3.45
Merged-chr6-118141122-3	chr6	118141012	118141212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1972.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	76.72	67.41	86.14	71.19	68.32	85.61	50.16	71.44	69.82	71.3	66.83	35.09
Merged-chr4-99177473-3	chr4	99177390	99177590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16444.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	35.94	32.7	59.33	48.26	37.64	37.63	43.18	44.33	40.52	30.13	42.71	27.57
Merged-chrM-13127-2	chrM	13035	13235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											46624.67	45282.08	54399.89	56788.19	43619.02	52543.83	47973.12	42470.92	0.0	0.0	0.0	0.0
Merged-chr5-102069428-3	chr5	102069323	102069523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	CpG	498.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	22.61	35.72	38.22	30.16	26.59	18.5	33.22	32.5	32.26	32.13	62.31	29.45
Merged-chr12-81788841-3	chr12	81788748	81788948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7678.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	36.34	32.7	27.95	34.99	38.46	44.84	25.24	54.11	47.21	45.69	53.77	37.28
Merged-chr11-93988092-3	chr11	93988008	93988208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7983.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	95.3	73.7	122.65	131.92	50.73	79.65	54.81	82.77	102.87	85.36	97.98	62.97
Merged-chr17-83645434-3	chr17	83645337	83645537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13542.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	94.89	91.56	116.94	123.88	119.87	121.98	79.39	128.02	116.24	105.44	157.28	75.5
Merged-chr12-3365208-3	chr12	3365116	3365316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008445)	promoter-TSS (NM_008445)	84.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	17.36	25.66	9.13	23.33	31.91	18.5	32.88	20.86	23.41	26.11	30.65	14.72
Merged-chr17-71133261-3	chr17	71133170	71133370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50262.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	28.27	16.35	31.95	27.35	29.46	21.95	20.59	39.06	33.24	23.1	37.69	17.54
Merged-chr1-16104434-3	chr1	16104318	16104518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	15.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	33.52	21.88	21.68	18.1	24.14	31.98	14.62	16.23	49.76	48.7	35.17	21.62
Merged-chr5-74632630-1	chr5	74632530	74632730	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159577, intron 2 of 10)	Kanga1c|DNA|TcMar-Tc2	45242.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.23	4.28	3.99	0.0	30.27	37.32	18.27	25.71	11.6	3.51	4.02	5.64
Merged-chr1-78607965-3	chr1	78607882	78608082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-49843.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	18.57	22.39	42.21	46.25	44.18	26.97	36.54	38.75	34.22	31.63	36.68	24.12
Merged-chr11-116868319-3	chr11	116868233	116868433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	14333.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	52.09	46.03	36.51	39.82	73.23	62.4	43.51	61.82	57.24	50.71	51.76	38.22
Merged-chrX-20921019-3	chrX	20920929	20921129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013680)	promoter-TSS (NM_013680)	-111.0	NM_013680	20964.0	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	61.78	58.1	59.33	61.94	54.41	85.29	58.13	71.94	78.48	74.31	103.01	41.35
Merged-chr1-138136604-3	chr1	138136500	138136700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38526.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	102.97	126.27	96.98	148.01	116.19	146.75	84.37	136.04	121.75	105.94	91.95	56.39
Merged-chr7-109703659-3	chr7	109703549	109703749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-88.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	86.01	78.48	85.57	59.12	84.68	92.5	69.42	88.54	121.16	96.4	144.21	62.03
Merged-chr5-93206836-2	chr5	93206731	93206931	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	313.0	NM_029363	75610.0	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding	33.52	11.57	19.97	12.87	33.96	34.49	18.27	19.68	42.09	56.24	57.79	29.13
Merged-chr7-125561489-3	chr7	125561388	125561588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	9206.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	31.9	29.18	63.32	26.55	56.87	58.01	35.54	40.15	66.09	59.25	58.79	40.72
Merged-chr16-30023565-3	chr16	30023478	30023678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14911.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	27.86	23.14	46.21	32.98	13.91	23.2	25.58	37.01	61.96	41.17	71.86	26.63
Merged-chr5-137657256-3	chr5	137657181	137657381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178162, intron 6 of 11)	RSINE1|SINE|B4	-11567.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	54.51	44.02	57.62	52.69	44.18	46.41	20.93	35.47	46.62	57.74	47.23	28.82
Merged-chr1-184615536-3	chr1	184615426	184615626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57835.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	20.19	16.35	33.66	24.13	22.5	17.56	13.95	21.11	25.57	22.59	27.13	22.56
Merged-chr10-7956322-3	chr10	7956222	7956422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138667)	promoter-TSS (NM_138667)	-199.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	62.99	65.65	72.45	55.1	90.82	118.84	70.09	84.17	106.8	105.44	124.11	61.4
Merged-chr8-119911003-3	chr8	119910894	119911094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009462, intron 1 of 13)	CpG	634.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	26.65	56.85	65.6	53.09	40.91	61.15	66.1	35.16	57.63	51.72	67.84	49.18
Merged-chr7-122970403-3	chr7	122970288	122970488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	71.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	29.07	28.42	22.25	20.51	18.0	22.89	33.88	22.96	41.5	31.63	37.69	38.85
Merged-chr9-44089464-3	chr9	44089372	44089572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198092, intron 3 of 12)	intron (NM_198092, intron 3 of 12)	4552.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	94.08	80.99	94.7	107.79	121.91	113.2	87.69	118.54	77.5	55.73	107.53	52.0
Merged-chr5-124050568-3	chr5	124050472	124050672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18312.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	31.5	41.25	54.76	34.59	42.96	75.88	32.88	49.04	74.15	58.75	50.75	38.53
Merged-chr11-43395454-3	chr11	43395341	43395541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20980.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	69.86	37.73	81.58	67.97	70.37	71.18	94.67	84.9	87.33	71.3	86.43	65.16
Merged-chr5-67260680-3	chr5	67260574	67260774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028975, exon 1 of 8)	5' UTR (NM_028975, exon 1 of 8)	109.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	117.5	104.38	91.84	95.72	101.87	133.58	83.04	104.94	133.75	143.6	161.3	92.73
Merged-chr2-38643901-3	chr2	38643751	38643951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011187)	promoter-TSS (NM_011187)	55.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	17.36	28.93	25.67	34.19	13.91	13.48	19.93	18.39	23.8	33.64	29.14	13.78
Merged-chr9-44568235-2	chr9	44568141	44568341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36651.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	18.17	13.83	3.42	10.05	24.14	17.25	9.3	11.27	39.14	23.1	19.6	25.69
Merged-chr1-37904982-3	chr1	37904869	37905069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033427)	TTS (NM_001033427)	11524.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	45.63	23.9	23.39	42.23	36.82	43.59	28.57	29.86	47.8	40.17	24.62	26.94
Merged-chr8-70001350-3	chr8	70001238	70001438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4954.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	121.95	109.92	112.95	100.55	141.96	140.79	95.0	127.18	147.91	146.11	169.34	71.11
Merged-chr10-127323665-3	chr10	127323571	127323771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-36.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	35.94	25.15	23.39	34.59	42.14	40.76	23.25	40.04	45.04	56.74	51.76	25.06
Merged-chr4-88409465-3	chr4	88409360	88409560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 43 of 43)	intron (NM_001081184, intron 43 of 43)	29466.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	14.13	18.36	26.81	43.04	26.59	51.11	15.61	49.77	26.75	9.04	50.75	38.53
Merged-chr4-109280263-3	chr4	109280156	109280356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	-19.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	108.62	91.56	90.13	93.31	109.64	140.48	53.48	85.51	113.69	129.04	150.74	73.3
Merged-chr5-146792340-3	chr5	146792262	146792462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	2594.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	34.32	19.62	35.37	19.71	34.36	26.03	18.27	34.37	30.88	27.11	26.13	17.23
Merged-chr18-53944401-3	chr18	53944293	53944493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	82280.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	27.86	22.64	22.82	24.53	45.41	26.03	26.57	46.99	33.44	28.12	59.29	23.18
Merged-chr14-30826747-3	chr14	30826641	30826841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1147.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	27.86	36.47	40.5	14.08	28.64	46.1	23.92	23.5	58.22	37.16	48.74	23.81
Merged-chr1-171287971-3	chr1	171287872	171288072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-11.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	48.05	42.26	46.78	30.57	61.77	55.82	20.93	47.3	63.33	42.68	71.86	51.06
Merged-chr6-94226215-1	chr6	94226115	94226315	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	11227.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.81	0.5	1.14	5.63	5.73	21.64	15.61	22.4	0.79	8.03	0.0	2.19
Merged-chr15-6554769-3	chr15	6554698	6554898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-25049.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	14.94	15.59	24.53	13.67	33.96	22.89	23.58	24.5	16.33	24.6	19.09	13.16
Merged-chr8-25840802-3	chr8	25840730	25840930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	-43.0	NM_011791	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	37.15	39.24	30.8	51.08	62.59	48.29	26.91	42.06	49.96	69.79	66.33	31.33
Merged-chr13-51645672-3	chr13	51645581	51645781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025415, intron 1 of 2)	CpG	449.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	35.94	38.99	26.81	39.82	28.23	54.88	37.87	20.41	53.11	34.65	37.69	27.57
Merged-chr17-47793521-3	chr17	47793441	47793641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	58.95	61.62	84.43	61.54	82.23	92.82	67.76	81.42	101.29	112.47	120.09	66.41
Merged-chr14-75045309-3	chr14	75045231	75045431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 9 of 13)	intron (NM_198642, intron 9 of 13)	29304.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	54.51	53.07	78.15	72.8	67.91	69.61	54.81	73.49	68.64	67.78	105.52	47.93
Merged-chr15-89429997-3	chr15	89429952	89430152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-125.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	96.91	103.88	104.39	125.49	86.73	109.12	77.73	89.64	99.72	94.4	159.79	57.95
Merged-chr1-152090333-3	chr1	152090214	152090414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197990)	promoter-TSS (NM_197990)	6.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	39.98	31.19	34.23	26.95	31.91	32.61	25.91	24.39	15.54	13.56	17.59	11.28
Merged-chr10-60262586-3	chr10	60262464	60262664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15064.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	49.26	41.5	55.9	47.06	63.41	46.41	57.13	68.78	81.04	80.84	77.88	72.05
Merged-chr5-134313667-3	chr5	134313574	134313774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359066, intron 1 of 32)	CpG	1086.0	NM_001359063	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	61.38	63.13	44.5	53.09	44.59	39.51	31.22	31.57	41.7	33.64	47.23	27.57
Merged-chr16-90934947-3	chr16	90934841	90935041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026502)	promoter-TSS (NM_026502)	-92.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	205.94	158.46	196.81	146.0	198.42	200.06	111.61	139.49	178.0	186.78	229.63	101.5
Merged-chr13-55105246-3	chr13	55105145	55105345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012017)	promoter-TSS (NM_012017)	-64.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	83.59	70.43	86.71	60.33	99.0	90.31	43.18	61.37	109.75	100.92	83.41	58.27
Merged-chr14-122644378-3	chr14	122644279	122644479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 8 of 24)	ORR1B2|LTR|ERVL-MaLR	110051.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	12.92	13.83	35.37	39.82	29.05	24.77	40.19	62.27	33.24	16.57	46.23	18.48
Merged-chr7-132317383-3	chr7	132317292	132317492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360768)	promoter-TSS (NM_001360768)	-164.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	51.28	50.81	42.21	39.42	60.14	44.84	54.14	66.7	56.25	48.7	94.97	46.99
Merged-chr1-171171359-2	chr1	171171241	171171441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15823.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	15.34	21.63	23.96	23.33	0.82	1.25	0.33	0.48	25.37	15.06	30.15	19.74
Merged-chr14-20348130-3	chr14	20348006	20348206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360365)	promoter-TSS (NM_001360365)	15.0	NM_027475	70601.0	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless cell cycle regulator	protein-coding	102.97	99.35	60.47	66.36	91.23	121.98	65.11	72.06	83.99	110.46	94.97	76.75
Merged-chr5-130081439-3	chr5	130081328	130081528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	2058.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	44.01	41.0	31.95	27.35	30.27	48.6	18.93	40.01	41.7	37.66	67.33	30.7
Merged-chr10-67047904-3	chr10	67047801	67048001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	42826.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	36.75	13.83	26.24	24.53	44.59	39.82	23.25	41.89	45.24	39.67	25.63	20.68
Merged-chr9-64738120-2	chr9	64738008	64738208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	-352.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	20.19	16.85	25.67	21.32	19.23	22.26	9.97	9.06	22.03	15.57	20.6	13.47
Merged-chrX-160994725-3	chrX	160994580	160994780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024624)	promoter-TSS (NM_001024624)	1.0	NM_001024624	382253.0	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding	66.63	60.37	65.03	70.38	91.64	99.72	63.11	80.02	85.36	106.45	107.03	62.03
Merged-chr12-105785149-3	chr12	105785069	105785269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	CpG	472.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	36.34	26.41	39.36	34.59	49.91	40.14	29.23	32.72	46.22	60.25	63.82	24.75
Merged-chr2-155397812-1	chr2	155397712	155397912	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019825, intron 12 of 13)	B3|SINE|B2	15956.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.65	2.26	3.42	5.23	3.68	1.88	7.97	12.17	10.42	0.0	13.57	6.58
Merged-chr7-90030878-3	chr7	90030871	90031071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1812.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	17.77	16.1	36.51	24.94	20.86	21.64	37.2	19.74	27.14	21.09	64.82	23.49
Merged-chr7-80044428-3	chr7	80044312	80044512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18184.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	41.99	31.44	33.66	45.05	35.18	42.02	27.24	22.91	28.13	20.08	34.17	17.54
Merged-chr6-113681527-3	chr6	113681425	113681625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-15525.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	58.15	56.34	75.3	68.37	88.37	96.27	55.47	89.08	74.74	72.81	61.81	38.53
Merged-chr4-137871613-3	chr4	137871515	137871715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	9378.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	123.56	96.84	120.94	108.19	118.23	145.81	114.93	132.08	73.17	62.26	87.93	47.62
Merged-chr12-16210743-1	chr12	16210643	16210843	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	379027.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	13.33	4.53	4.56	5.63	36.82	65.54	35.87	48.06	0.0	0.0	1.0	1.57
Merged-chr1-136117172-1	chr1	136117072	136117272	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14011.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	1.21	4.53	0.57	0.0	4.91	10.98	1.66	3.67	23.21	20.08	21.61	16.29
Merged-chr13-52576282-3	chr13	52576149	52576349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3024.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	110.64	102.62	104.39	89.29	108.82	133.27	95.67	111.25	116.24	109.96	150.24	62.34
Merged-chr5-36538820-3	chr5	36538714	36538914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 3 of 13)	L1MEf|LINE|L1	-8191.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	25.44	20.63	25.67	22.52	22.91	15.05	19.27	30.48	25.18	9.54	24.62	19.11
Merged-chr6-8209210-3	chr6	8209059	8209259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-68.0	NM_145374	252875.0	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	meiosis regulator for oocyte development	protein-coding	123.16	117.97	83.86	119.05	123.96	174.66	112.61	164.38	168.76	167.2	237.67	87.4
Merged-chr9-65541858-3	chr9	65541760	65541960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38227.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	93.68	98.35	104.39	80.84	90.41	122.61	68.1	74.52	128.63	143.6	170.34	94.92
Merged-chr5-118466556-3	chr5	118466445	118466645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58A|DNA|hAT-Charlie	-94174.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	25.44	28.93	6.85	18.9	45.41	42.96	19.27	25.46	26.16	30.63	22.61	14.72
Merged-chr8-60993076-4	chr8	60992976	60993176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293637)	promoter-TSS (NM_001293637)	-117.0	NM_001293637	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	91.66	88.79	95.27	113.02	122.73	157.1	101.64	123.48	196.29	187.79	254.26	88.65
Merged-chr3-65873289-3	chr3	65873186	65873386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	84963.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	78.74	67.66	80.43	88.48	70.77	90.62	55.8	89.1	78.28	85.86	99.99	60.46
Merged-chr3-60501817-3	chr3	60501702	60501902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	623.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	50.47	28.17	38.79	39.42	20.05	38.57	39.86	42.17	43.07	59.25	95.97	41.98
Merged-chr7-45434692-3	chr7	45434562	45434762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011304)	promoter-TSS (NM_011304)	-177.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	147.39	136.08	160.3	112.62	155.46	206.96	142.83	140.3	223.04	274.15	225.61	139.09
Merged-chr9-58275334-3	chr9	58275219	58275419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22155.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	159.5	162.99	197.95	195.07	201.28	249.6	140.51	154.01	223.04	217.91	223.1	135.02
Merged-chr10-40317002-3	chr10	40316918	40317118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-14830.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	31.5	24.4	37.65	42.23	23.73	28.22	25.91	28.09	42.68	53.22	31.15	19.11
Merged-chr2-39065581-3	chr2	39065481	39065681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029793)	promoter-TSS (NM_029793)	-40.0	NM_029793	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	86.82	76.46	68.45	66.36	90.82	90.62	62.78	98.61	96.57	118.5	185.92	73.62
Merged-chr10-68725597-3	chr10	68725513	68725713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1867.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	9.69	12.07	28.52	27.35	24.55	6.59	36.54	43.57	33.04	15.57	50.25	26.94
Merged-chr8-70791583-3	chr8	70791479	70791679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	854.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	35.13	23.14	31.95	31.37	46.64	39.51	36.87	55.23	45.43	33.64	70.85	16.6
Merged-chr8-70139246-3	chr8	70139119	70139319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309645)	promoter-TSS (NM_001309645)	-22.0	NM_001025589	19727.0	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	134.87	137.08	134.63	96.13	197.6	247.41	170.4	161.33	143.78	164.69	180.89	102.44
Merged-chr11-97996002-3	chr11	97995891	97996091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152188, exon 1 of 6)	non-coding (NR_152188, exon 1 of 6)	182.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	67.43	66.65	30.8	20.11	39.68	115.39	17.94	17.89	121.36	102.43	77.38	21.62
Merged-chr12-21417217-1	chr12	21417117	21417317	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011739, exon 1 of 5)	5' UTR (NM_011739, exon 1 of 5)	219.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	48.46	38.48	29.66	45.45	23.32	81.22	40.52	51.2	54.88	63.77	58.29	33.52
Merged-chr2-130730954-3	chr2	130730872	130731072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-33453.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	128.0	89.04	139.19	142.38	158.73	186.58	133.86	162.7	165.22	144.61	200.99	102.12
Merged-chr19-60161128-3	chr19	60161028	60161228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026942, exon 5 of 5)	non-coding (NR_026942, exon 5 of 5)	16453.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	56.53	59.36	56.48	60.33	45.41	47.04	34.55	54.25	60.38	50.71	79.89	31.01
Merged-chr14-45219559-3	chr14	45219474	45219674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-143.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	270.14	222.35	269.26	257.01	274.51	315.14	245.81	285.48	315.68	333.4	431.13	215.53
Merged-chr18-36560396-3	chr18	36560286	36560486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-217.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	276.2	282.47	275.53	273.9	286.37	372.52	223.88	298.18	370.17	508.13	475.85	269.72
Merged-chr2-153240900-1	chr2	153240800	153241000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_080463)	promoter-TSS (NM_080463)	458.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	9.69	3.77	3.42	5.63	9.82	5.64	6.64	12.87	12.78	5.52	9.04	7.21
Merged-chrUn_JH584304-55090-1	chrUn_JH584304	54990	55190	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 5 of 6)	intron (NR_003518, intron 5 of 6)	4599.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.36	24.1	13.06	28.82
Merged-chr9-40710192-2	chr9	40710092	40710292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	24228.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	26.25	12.83	31.38	23.73	36.82	30.1	14.95	31.88	0.0	0.5	2.01	0.94
Merged-chr10-57690364-3	chr10	57690259	57690459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	39378.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	36.34	20.88	23.96	53.89	31.5	15.68	20.93	46.65	35.99	26.61	50.75	22.87
Merged-chr6-72598504-3	chr6	72598402	72598602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026159)	promoter-TSS (NM_026159)	-89.0	NM_001253692	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	124.37	127.52	115.8	88.48	122.32	121.35	110.61	111.81	115.85	144.1	120.6	67.67
Merged-chr10-19077916-1	chr10	19077816	19078016	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62506.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	23.02	33.2	22.82	2.82	25.36	62.71	12.62	7.93	27.34	39.16	15.07	9.4
Merged-chr1-120531961-3	chr1	120531873	120532073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26949.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	68.65	56.85	72.45	47.46	36.0	59.89	54.14	26.47	93.23	94.4	89.44	35.09
Merged-chr7-44305304-3	chr7	44305198	44305398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1661.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	124.37	134.06	154.02	141.17	119.46	127.62	79.06	97.99	204.16	206.37	250.24	137.21
Merged-chr7-97155301-3	chr7	97155182	97155382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	73531.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	21.0	26.41	20.54	22.12	28.64	21.64	23.58	28.23	25.57	14.56	31.15	17.86
Merged-chr11-78512187-3	chr11	78512103	78512303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	-35.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	59.36	46.53	52.48	38.61	72.82	63.66	46.5	44.66	76.71	103.43	111.05	48.24
Merged-chr10-84917269-3	chr10	84917247	84917447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183172)	promoter-TSS (NM_183172)	-266.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	110.24	108.16	115.8	118.65	114.96	116.34	94.0	100.07	98.15	128.04	137.18	105.26
Merged-chr5-99326607-1	chr5	99326507	99326707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73680.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	23.42	20.37	26.81	17.29	16.77	25.4	14.28	13.85	17.51	11.55	18.59	12.53
Merged-chr8-105393405-3	chr8	105393309	105393509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301173, intron 5 of 15)	intron (NM_001301173, intron 5 of 15)	18028.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	49.26	57.35	57.62	32.18	60.96	53.31	33.22	38.19	63.53	63.27	70.35	23.81
Merged-chr6-39118224-3	chr6	39118086	39118286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045813)	promoter-TSS (NR_045813)	163.0	NM_172893	243771.0	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	37.96	44.52	50.2	37.4	50.32	42.65	38.86	43.49	51.14	39.67	49.24	29.76
Merged-chr7-78895851-3	chr7	78895752	78895952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-75.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	130.83	139.85	127.78	149.62	171.01	181.25	120.25	162.95	171.71	162.18	280.89	122.49
Merged-chr4-53203821-3	chr4	53203708	53203908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42388.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	16.96	17.86	17.68	25.34	17.59	18.5	26.24	26.24	26.55	15.57	20.1	17.86
Merged-chr5-105699936-3	chr5	105699834	105700034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-35.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	96.91	54.08	78.72	59.53	101.87	98.78	54.48	110.8	114.67	108.96	150.24	43.23
Merged-chr16-20403459-3	chr16	20403354	20403554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 5 of 6)	intron (NM_176839, intron 5 of 6)	22940.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	42.8	45.78	57.05	26.55	72.0	94.07	51.15	38.89	77.1	78.83	45.73	33.83
Merged-chr17-23829189-3	chr17	23829092	23829292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026305)	promoter-TSS (NM_026305)	-83.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	79.55	62.88	56.48	54.3	90.41	98.78	43.85	66.65	93.23	81.84	118.08	64.22
Merged-chr6-145340837-3	chr6	145340748	145340948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-46777.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	235.41	256.56	242.44	270.28	258.14	330.51	262.08	328.26	346.76	332.39	434.65	209.26
Merged-chr9-13511297-1	chr9	13511197	13511397	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79936.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.65	2.77	7.42	12.47	1.23	2.51	8.3	19.85	4.13	4.52	9.55	3.45
Merged-chr11-46314866-3	chr11	46314768	46314968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-2009.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	44.42	60.37	59.33	56.71	69.96	85.29	82.38	72.31	92.44	66.78	71.86	41.04
Merged-chr4-124645356-3	chr4	124645265	124645465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12281.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	34.73	23.39	33.66	20.11	39.27	34.81	26.24	32.58	44.06	24.1	32.66	30.07
Merged-chr8-14889373-1	chr8	14889273	14889473	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	837.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	18.98	16.35	21.68	16.09	20.05	29.16	20.59	33.76	33.83	29.62	29.14	19.74
Merged-chr16-29847974-3	chr16	29847866	29848066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131158.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	33.92	36.72	51.34	45.05	32.32	30.42	30.56	46.15	30.68	32.64	38.19	35.4
Merged-chr11-4202576-3	chr11	4202481	4202681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	B3|SINE|B2	-15670.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	23.02	24.4	27.38	26.95	31.5	35.75	24.25	37.68	38.94	23.1	48.74	17.54
Merged-chr16-24933924-3	chr16	24933814	24934014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125725.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	85.6	55.08	91.84	69.58	73.23	77.45	44.51	49.51	69.82	76.82	93.96	43.23
Merged-chr9-108848387-3	chr9	108848284	108848484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-5659.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	71.07	66.65	51.34	48.67	54.82	130.45	91.01	43.85	95.0	94.9	114.57	31.95
Merged-chr11-32267656-3	chr11	32267563	32267763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	44.0	NM_181569	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	79.95	78.98	108.96	96.13	137.87	127.0	80.05	152.02	107.98	122.01	177.38	105.88
Merged-chr3-116845008-3	chr3	116844913	116845113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14554.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	40.78	22.64	19.97	37.81	49.09	45.15	31.56	31.23	43.47	49.21	46.73	33.21
Merged-chr6-71823744-3	chr6	71823644	71823844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025430)	promoter-TSS (NM_025430)	40.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	23.82	32.2	20.54	30.97	31.91	25.4	29.56	26.16	37.76	32.13	20.6	17.23
Merged-chr2-154990487-1	chr2	154990387	154990587	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23083.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.0	0.0	0.0	0.0	14.32	16.62	19.93	19.32	0.39	0.5	0.5	0.31
Merged-chr1-107502268-3	chr1	107502168	107502368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9155.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	44.42	32.7	44.5	41.83	56.87	76.83	84.04	84.28	58.42	73.31	80.4	39.47
Merged-chr8-105345232-3	chr8	105345129	105345329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2741.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	71.07	61.12	70.17	54.3	66.27	98.15	50.16	69.11	88.51	73.81	133.16	45.42
Merged-chr13-100775876-3	chr13	100775774	100775974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021886)	promoter-TSS (NM_021886)	25.0	NM_021886	26886.0	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	25.84	25.66	38.79	16.89	42.55	36.06	22.26	26.55	45.04	26.61	54.27	24.75
Merged-chr12-33156983-3	chr12	33156885	33157085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	MIRb|SINE|MIR	9299.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	17.77	14.59	30.23	24.94	28.64	30.42	17.27	24.62	16.33	17.07	39.19	17.86
Merged-chr2-152806224-3	chr2	152806121	152806321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	22268.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	71.88	67.66	109.53	110.6	152.19	144.87	152.13	162.14	119.39	104.94	124.62	92.1
Merged-chr5-123151256-3	chr5	123151156	123151356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 6 of 16)	MIR|SINE|MIR	9063.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	71.88	59.36	76.44	92.51	99.41	101.6	57.47	77.24	87.72	80.34	117.08	78.32
Merged-chr2-6273609-3	chr2	6273532	6273732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-49125.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	52.49	47.29	63.89	58.72	67.91	45.47	44.84	68.36	60.38	46.7	65.32	45.42
Merged-chr19-6299644-3	chr19	6299493	6299693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6864.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	88.43	84.76	95.84	79.64	99.82	146.12	91.35	69.25	102.08	104.94	131.15	48.56
Merged-chr4-55798223-3	chr4	55798113	55798313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-265738.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	41.59	35.72	75.3	66.36	36.41	46.41	34.88	65.16	51.73	36.15	47.23	32.58
Merged-chr6-140609746-3	chr6	140609645	140609845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-12918.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	17.36	15.85	22.25	19.31	27.41	16.62	16.61	28.09	31.08	22.59	37.18	17.23
Merged-chr8-56311159-3	chr8	56311026	56311226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	16574.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	16.56	10.82	14.83	20.91	23.73	17.25	19.27	18.45	6.49	11.05	7.03	8.46
Merged-chr17-35046841-3	chr17	35046717	35046917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-72.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	99.74	100.11	91.84	90.9	105.96	125.12	75.4	88.26	152.63	153.14	176.87	101.19
Merged-chr2-166711836-3	chr2	166711741	166711941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1991.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	33.92	39.49	24.53	5.63	17.59	86.86	19.27	15.59	46.62	64.27	30.65	8.14
Merged-chr15-25355509-3	chr15	25355428	25355628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58236.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	39.57	26.91	63.32	55.91	92.05	70.24	63.78	109.37	120.18	79.33	127.63	68.61
Merged-chr2-70977795-3	chr2	70977692	70977892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	40582.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	51.28	22.39	53.05	49.47	49.91	42.65	57.8	78.06	46.22	52.72	56.78	52.32
Merged-chr1-34801719-3	chr1	34801611	34801811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	-11.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	23.82	14.09	36.51	13.67	48.68	44.53	25.24	42.2	45.24	38.66	50.25	34.77
Merged-chr2-12294280-3	chr2	12294202	12294402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-6944.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	37.96	27.42	40.5	53.09	42.14	32.61	27.24	50.58	34.81	37.66	58.29	39.16
Merged-chr1-58713200-3	chr1	58713088	58713288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-98.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	53.7	71.18	70.74	51.88	70.37	86.55	42.85	57.87	97.56	107.45	91.95	61.09
Merged-chr4-149665209-3	chr4	149665103	149665303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-1887.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	25.04	14.34	33.09	14.88	22.91	24.77	11.63	31.46	31.86	23.1	20.6	12.53
Merged-chr6-90716438-3	chr6	90716312	90716512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001134383, exon 1 of 14)	5' UTR (NM_001134383, exon 1 of 14)	117.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	47.24	39.24	41.07	59.93	51.96	66.79	77.73	72.2	47.8	39.67	55.27	45.74
Merged-chr11-58938929-3	chr11	58938820	58939020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-14.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	37.96	51.31	37.65	51.48	37.23	45.47	37.54	55.29	42.88	42.68	71.35	38.53
Merged-chr5-92368540-3	chr5	92368349	92368549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5153.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	13.33	8.3	10.27	8.45	14.32	20.07	15.94	8.33	19.28	26.11	14.07	11.59
Merged-chr4-129782414-3	chr4	129782310	129782510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38069.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	37.55	50.05	42.21	26.14	48.68	68.36	32.88	31.77	63.33	71.8	62.31	37.59
Merged-chr16-76225343-3	chr16	76225244	76225444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102731.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	158.69	140.86	139.76	123.48	150.14	212.92	168.74	154.21	190.39	203.85	177.38	101.5
Merged-chr14-32173960-1	chr14	32173860	32174060	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033988, intron 6 of 9)	RSINE1|SINE|B4	8171.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	8.08	10.06	4.56	6.44	17.18	9.72	7.31	14.24	12.98	3.01	20.1	9.08
Merged-chr2-79713841-3	chr2	79713743	79713943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	6063.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	90.45	51.31	67.31	67.17	70.77	93.76	72.08	128.97	104.05	72.3	83.41	43.23
Merged-chr1-132370970-3	chr1	132370857	132371057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3009.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	41.19	37.48	38.79	75.61	32.73	30.1	47.17	40.99	31.27	19.58	41.71	25.69
Merged-chr4-12087194-3	chr4	12087095	12087295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110955, intron 1 of 28)	intron (NR_110955, intron 1 of 28)	762.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	18.17	16.35	23.39	16.89	29.86	25.4	12.62	14.52	45.24	27.11	31.15	26.31
Merged-chr14-50785548-3	chr14	50785443	50785643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177625)	promoter-TSS (NM_177625)	-23.0	NM_001080949	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	51.28	45.02	27.95	36.6	46.23	47.98	24.58	37.32	77.69	65.27	78.89	29.45
Merged-chr11-50430933-3	chr11	50430781	50430981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172557, exon 1 of 18)	exon (NM_172557, exon 1 of 18)	230.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	13.73	17.1	21.68	13.67	17.18	17.56	20.59	11.58	31.67	15.57	30.15	21.93
Merged-chr19-44388648-3	chr19	44388559	44388759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19050.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	83.18	72.69	85.0	74.41	122.32	157.73	89.35	116.83	110.15	86.36	134.67	65.16
Merged-chr2-34944919-3	chr2	34944836	34945036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	16836.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	25.04	21.13	19.97	18.9	45.82	54.88	39.86	45.34	40.71	55.23	68.34	20.36
Merged-chr7-24082222-1	chr7	24082122	24082322	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001045486, exon 1 of 5)	5' UTR (NM_001045486, exon 1 of 5)	325.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	18.57	17.36	23.96	15.28	25.36	17.56	21.59	18.64	23.8	37.16	54.77	26.94
Merged-chr1-180944790-3	chr1	180944709	180944909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2291.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	36.75	30.18	34.23	20.51	42.96	53.31	27.57	33.2	18.88	33.64	34.17	15.66
Merged-chr2-116990307-3	chr2	116990191	116990391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90139.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	61.38	61.12	91.84	68.37	92.05	118.22	64.77	84.03	93.43	100.92	119.09	59.52
Merged-chr15-64059904-3	chr15	64059799	64059999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360038)	promoter-TSS (NM_001360038)	-135.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	64.2	51.81	35.94	37.81	45.82	49.54	36.87	48.2	66.48	58.75	81.4	54.2
Merged-chr17-24454798-3	chr17	24454686	24454886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125990, intron 1 of 13)	CpG	606.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	62.59	44.02	31.38	39.01	58.5	56.44	35.87	40.18	52.32	56.24	47.74	20.05
Merged-chr11-115639153-3	chr11	115639038	115639238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10843.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	79.14	86.02	87.28	55.1	94.09	93.76	67.76	79.93	85.76	97.41	116.58	50.44
Merged-chr2-6165987-3	chr2	6165880	6166080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27271.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	27.46	18.86	34.23	36.2	30.68	37.32	26.91	42.87	31.27	27.62	27.13	38.85
Merged-chr11-114826864-3	chr11	114826762	114826962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24670.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	29.07	14.84	30.23	27.35	18.82	31.36	15.94	28.85	28.91	26.61	41.2	22.24
Merged-chr10-21993388-5	chr10	21993250	21993450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161850)	promoter-TSS (NM_001161850)	-540.0	NM_001161850	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	20.19	23.39	12.55	26.55	13.91	21.32	34.21	23.44	26.75	24.6	35.68	15.66
Merged-chr6-7845020-1	chr6	7844920	7845120	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-204.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	26.65	25.15	25.67	18.9	29.46	30.1	37.2	24.62	18.1	24.1	25.63	15.98
Merged-chr1-184536612-3	chr1	184536500	184536700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21091.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	50.07	30.43	46.21	49.07	63.0	55.82	40.52	40.01	54.09	62.76	56.28	31.95
Merged-chr8-26981837-3	chr8	26981741	26981941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101502)	TTS (NM_001101502)	4505.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	43.61	35.47	43.93	35.39	63.82	73.69	42.85	58.99	61.37	46.7	71.35	31.33
Merged-chr1-86504257-3	chr1	86504120	86504320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-22337.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	80.36	69.92	79.29	62.34	92.87	86.86	63.44	82.82	92.05	109.46	138.69	46.36
Merged-chrUn_JH584304-65446-1	chrUn_JH584304	65346	65546	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5757.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	5.7	16.57	4.52	21.3
Merged-chr2-118567384-3	chr2	118567270	118567470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17684.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	46.84	33.7	35.37	23.33	48.27	37.0	14.28	33.22	47.01	35.15	49.75	21.93
Merged-chr17-72917558-3	chr17	72917451	72917651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-754.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	25.44	31.94	27.38	18.5	23.32	19.13	12.62	11.8	24.39	26.11	46.73	30.39
Merged-chr12-21462803-3	chr12	21462701	21462901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45365.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	16.15	19.12	24.53	26.95	11.05	14.74	12.95	24.73	29.9	19.08	22.61	21.3
Merged-chr8-70754597-3	chr8	70754489	70754689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-90.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	192.21	169.28	224.76	214.37	239.33	234.24	189.01	260.66	214.19	187.29	264.81	126.25
Merged-chr13-23544427-3	chr13	23544348	23544548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013548, exon 1 of 1)	5' UTR (NM_013548, exon 1 of 1)	396.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	132.85	101.62	114.66	124.28	108.82	105.36	73.08	82.74	141.42	148.62	138.69	101.81
Merged-chr7-44854402-2	chr7	44854309	44854509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290694, intron 4 of 4)	intron (NM_001290694, intron 4 of 4)	-2737.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	13.33	18.36	25.1	19.31	11.45	16.31	17.94	12.5	24.98	19.58	14.07	20.36
Merged-chr8-71629437-3	chr8	71629332	71629532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029873, exon 42 of 42)	exon (NM_001029873, exon 42 of 42)	1674.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	83.99	84.76	77.58	74.81	121.91	119.16	108.29	95.64	138.08	119.0	122.61	66.73
Merged-chr18-82812529-3	chr18	82812422	82812622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43375.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	51.28	60.37	50.77	34.59	59.32	55.82	52.48	52.12	60.78	60.75	68.34	39.47
Merged-chr2-37358874-3	chr2	37358790	37358990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026176, intron 1 of 3)	intron (NM_026176, intron 1 of 3)	442.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	83.59	77.97	98.69	102.16	103.91	125.74	91.68	110.27	115.46	106.95	161.3	72.99
Merged-chr10-43901712-3	chr10	43901611	43901811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130892)	promoter-TSS (NM_130892)	25.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	39.57	56.85	38.22	41.43	47.87	50.49	31.56	44.72	55.47	51.21	64.82	32.89
Merged-chr5-110108250-3	chr5	110108138	110108338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145147)	promoter-TSS (NM_145147)	-41.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	136.08	128.53	142.61	112.62	121.5	159.61	76.4	101.19	208.1	218.92	249.73	121.86
Merged-chr11-82570226-3	chr11	82570119	82570319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-63134.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	31.9	29.93	23.96	30.57	27.0	40.76	25.58	29.27	35.8	24.6	45.22	24.75
Merged-chr13-81657200-1	chr13	81657100	81657300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-606.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	28.27	31.94	26.24	34.99	9.41	6.9	6.64	4.68	8.46	10.04	6.03	5.33
Merged-chr16-93091061-3	chr16	93090973	93091173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	262116.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	29.88	15.85	33.09	37.81	26.59	18.19	29.9	43.04	40.91	21.09	54.77	34.46
Merged-chr11-106660829-3	chr11	106660737	106660937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47907.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	44.42	23.39	44.5	29.36	35.18	43.9	30.23	34.37	22.62	35.65	27.64	23.49
Merged-chr9-118633027-3	chr9	118632928	118633128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	26319.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	64.61	27.67	43.93	47.86	52.37	41.39	30.56	71.13	44.45	20.59	65.83	36.03
Merged-chr4-97752436-2	chr4	97752349	97752549	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-25177.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	10.09	12.58	21.68	14.08	24.55	16.93	10.63	21.67	21.83	27.11	24.12	15.98
Merged-chr5-104973655-3	chr5	104973564	104973764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 5 of 15)	intron (NM_030239, intron 5 of 15)	9053.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	40.38	26.16	46.21	34.59	42.14	28.54	29.23	42.7	59.79	53.73	77.88	35.71
Merged-chr2-72852728-3	chr2	72852625	72852825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39008.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	65.82	47.79	64.46	46.25	91.64	92.82	69.09	94.04	102.28	105.44	129.14	67.04
Merged-chr15-75909455-5	chr15	75909428	75909628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285430)	promoter-TSS (NM_001285430)	28.0	NM_001285431	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	60.97	79.73	52.48	41.83	56.87	78.39	42.52	45.36	75.53	80.34	81.9	51.38
Merged-chr12-24708199-3	chr12	24708088	24708288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009104)	promoter-TSS (NM_009104)	-66.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	27.86	30.18	33.66	23.73	44.18	43.9	31.22	44.86	66.28	58.75	64.82	36.65
Merged-chr10-67713251-3	chr10	67713144	67713344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141285.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	45.63	35.72	76.44	71.19	60.14	45.78	44.18	65.72	54.88	57.74	58.29	36.65
Merged-chr5-96918125-3	chr5	96918031	96918231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3141.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	22.61	29.18	45.64	39.82	36.82	44.84	33.22	41.52	46.42	46.7	67.33	35.4
Merged-chr1-72429391-3	chr1	72429298	72429498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045533, intron 3 of 3)	intron (NM_001045533, intron 3 of 3)	107166.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	19.38	26.91	36.51	43.44	59.73	54.88	62.45	99.0	86.54	53.22	72.36	34.46
Merged-chr11-69045639-3	chr11	69045545	69045745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	8.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	18.57	24.65	13.69	21.72	33.96	36.06	14.28	17.41	39.14	40.17	37.18	17.23
Merged-chr13-119791430-2	chr13	119791341	119791541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-319.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	21.4	22.89	20.54	24.53	31.5	25.09	23.58	25.82	31.08	32.64	26.13	20.68
Merged-chr2-160367128-3	chr2	160367039	160367239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-74.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	247.93	267.63	212.78	243.73	179.6	198.18	171.07	246.98	224.42	227.45	266.82	176.68
Merged-chr15-99725504-3	chr15	99725392	99725592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-126.0	NM_183256	66379.0	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	183.73	114.7	145.47	128.3	146.87	180.93	102.64	112.77	183.31	173.23	153.76	114.66
Merged-chr15-100405612-3	chr15	100405509	100405709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146161, exon 8 of 16)	exon (NM_001146161, exon 8 of 16)	17446.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	19.79	27.92	26.81	32.58	36.0	52.05	26.91	48.17	38.16	44.69	71.35	29.45
Merged-chr17-10392588-1	chr17	10392488	10392688	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63628.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	21.4	36.72	43.35	32.98	38.05	32.93	31.56	30.03	29.9	30.13	47.23	22.87
Merged-chr9-57077049-3	chr9	57076936	57077136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152107)	promoter-TSS (NR_152107)	660.0	NM_011378	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	93.68	123.5	93.55	47.86	83.87	121.35	75.4	62.22	87.92	110.97	94.97	51.38
Merged-chr3-107098235-3	chr3	107098124	107098324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3343.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	52.9	36.47	22.25	18.9	31.91	58.95	33.22	37.99	56.84	46.7	57.79	25.37
Merged-chr16-15637885-3	chr16	15637769	15637969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	3.0	NM_011159	19090.0	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	94.89	70.93	78.15	85.27	98.18	83.72	89.35	132.14	134.53	123.52	146.72	78.0
Merged-chr9-7873034-3	chr9	7872942	7873142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007464, exon 1 of 9)	5' UTR (NM_007464, exon 1 of 9)	128.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	228.95	260.58	262.41	172.14	248.33	328.94	231.86	172.04	370.95	346.45	427.11	190.78
Merged-chr14-54464174-3	chr14	54464079	54464279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	32.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	32.3	29.68	42.78	30.57	29.86	38.26	33.88	31.46	41.89	40.17	47.74	31.95
Merged-chr2-35201119-3	chr2	35201011	35201211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026697)	promoter-TSS (NM_026697)	9.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	139.71	125.01	143.18	113.42	134.6	168.08	80.39	142.32	193.54	161.18	205.01	90.22
Merged-chr17-46253878-3	chr17	46253796	46253996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111142)	promoter-TSS (NM_001111142)	-269.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	72.68	46.28	40.5	55.91	66.68	82.16	39.86	59.64	87.92	76.82	59.8	52.63
Merged-chr18-73745085-3	chr18	73744971	73745171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	9408.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	22.61	20.37	30.23	41.83	62.18	39.51	35.21	57.84	39.73	33.64	43.72	27.57
Merged-chr1-36547330-3	chr1	36547222	36547422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-70.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	122.75	105.14	131.78	118.65	105.55	150.83	73.08	120.36	144.17	148.12	200.49	78.94
Merged-chr17-23967211-3	chr17	23967115	23967315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8015.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	188.57	170.03	227.61	214.37	182.05	248.35	206.61	197.33	204.36	203.35	265.81	141.6
Merged-chr19-29418068-3	chr19	29417977	29418177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7158.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	44.01	48.54	54.19	21.32	58.91	91.25	43.18	34.18	71.2	54.73	67.33	28.19
Merged-chr6-86438624-4	chr6	86438496	86438696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243741)	promoter-TSS (NM_001243741)	-50.0	NM_001243742	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	25.84	32.2	22.82	32.98	18.41	35.12	16.61	23.07	40.32	26.11	36.18	20.99
Merged-chr10-68732433-3	chr10	68732335	68732535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8689.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	21.0	12.58	28.52	34.59	30.27	18.5	47.83	43.18	43.86	38.66	82.91	27.25
Merged-chr3-95658793-3	chr3	95658693	95658893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	72.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	235.41	222.35	188.25	203.11	245.46	311.38	138.85	149.19	285.79	328.88	299.48	153.5
Merged-chr5-93206489-3	chr5	93206395	93206595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	0.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	67.43	52.07	54.19	54.3	73.23	66.79	33.22	47.27	93.82	86.86	121.1	47.93
Merged-chr5-140735489-3	chr5	140735388	140735588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11361.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	168.79	135.83	157.45	148.01	152.6	181.25	101.31	172.96	156.56	98.91	164.31	87.09
Merged-chr17-70925012-3	chr17	70924915	70925115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64415.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	36.75	35.97	63.32	45.45	44.18	56.44	37.54	41.61	58.02	44.69	79.89	42.6
Merged-chr15-54920169-3	chr15	54920075	54920275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-29.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	29.48	29.93	30.23	18.9	29.05	40.45	24.91	35.1	64.71	42.68	67.33	32.89
Merged-chr7-19295969-3	chr7	19295872	19296072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013648, exon 10 of 10)	3' UTR (NM_013648, exon 10 of 10)	4903.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	26.25	33.45	17.11	18.5	31.09	27.91	13.62	22.54	28.13	30.13	28.14	19.74
Merged-chr1-74236461-3	chr1	74236361	74236561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029711)	promoter-TSS (NM_029711)	-56.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	126.79	105.14	103.25	83.26	98.59	154.59	104.97	89.89	145.75	132.05	152.25	105.26
Merged-chr9-47651634-3	chr9	47651525	47651725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	121273.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	61.38	37.48	98.12	103.77	60.55	75.88	72.41	94.51	57.63	53.73	79.39	50.75
Merged-chr12-116434939-1	chr12	116434839	116435039	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 17 of 28)	intron (NM_133762, intron 17 of 28)	29537.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	16.56	6.79	6.85	7.24	6.95	3.76	4.98	4.07	57.43	34.14	39.19	26.94
Merged-chr7-110018699-2	chr7	110018580	110018780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181517, intron 1 of 24)	CpG	429.0	NM_001362172	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	18.57	20.12	13.12	20.51	22.09	23.52	29.23	28.35	26.75	21.59	25.12	26.0
Merged-chr5-33275161-3	chr5	33275062	33275262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310535)	promoter-TSS (NM_001310535)	-158.0	NM_001198860	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	62.18	65.9	64.46	56.71	77.73	95.95	63.44	77.52	69.82	79.33	88.44	66.41
Merged-chr13-113433682-3	chr13	113433581	113433781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69163.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	35.13	31.19	58.19	66.77	73.64	64.28	89.35	95.55	60.38	50.21	95.47	41.98
Merged-chr13-100651177-3	chr13	100651096	100651296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-135.0	NM_001283011	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	51.69	54.08	47.92	36.2	42.96	52.37	45.18	37.71	49.37	47.7	55.27	43.54
Merged-chr4-119108981-6	chr4	119108938	119109138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 1 of 9)	CpG	293.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	23.42	22.13	30.8	15.69	29.86	36.06	30.23	33.79	60.19	45.19	52.26	39.47
Merged-chr18-89162537-3	chr18	89162444	89162644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34883.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	34.73	33.2	38.79	41.83	31.09	30.42	38.2	47.75	51.14	27.11	71.35	39.47
Merged-chr3-100442682-3	chr3	100442594	100442794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	16289.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	37.15	31.44	62.75	36.2	45.41	35.12	35.54	64.07	74.94	50.71	75.37	56.39
Merged-chr2-152735196-3	chr2	152735096	152735296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1055.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	103.78	71.69	77.58	121.46	104.73	84.04	26.24	69.34	109.56	137.58	153.76	51.69
Merged-chr14-47365232-3	chr14	47365113	47365313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8647.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	12.92	17.36	30.8	26.95	24.14	23.83	26.91	39.08	52.32	26.61	71.35	39.47
Merged-chr7-73558607-3	chr7	73558491	73558691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-196.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	246.32	263.85	269.83	252.58	284.33	338.35	274.37	302.83	371.35	402.69	407.01	218.66
Merged-chr4-41563518-1	chr4	41563418	41563618	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	6009.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	1.62	2.52	1.14	6.03	0.0	0.63	1.99	2.5	22.42	23.1	19.09	11.9
Merged-chr7-27178555-3	chr7	27178461	27178661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	322.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	73.09	68.42	86.14	97.73	98.18	93.13	81.38	82.65	112.51	99.42	140.19	62.97
Merged-chr12-36036895-3	chr12	36036805	36037005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	5573.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	73.49	48.04	63.89	67.57	73.23	80.9	55.14	91.82	63.14	51.72	54.27	36.65
Merged-chr5-64806350-3	chr5	64806236	64806436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	2813.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	72.68	48.29	82.15	78.03	78.96	90.94	76.4	111.34	86.94	95.4	102.0	62.34
Merged-chr13-12412265-3	chr13	12412176	12412376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	16901.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	177.27	181.35	232.75	277.92	280.24	216.68	226.54	280.96	255.3	248.54	380.38	171.36
Merged-chr13-104109650-3	chr13	104109551	104109751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	-37.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	177.67	166.76	195.1	211.96	204.96	241.76	185.35	226.18	266.91	218.42	322.59	163.21
Merged-chr9-16038741-1	chr9	16038641	16038841	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-164185.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.81	1.01	1.14	8.85	22.09	29.16	19.6	41.69	4.72	4.02	12.56	4.7
Merged-chr2-159591741-5	chr2	159591659	159591859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-355582.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	10.5	15.34	15.97	8.85	9.41	15.99	14.95	17.83	29.5	22.59	21.1	14.72
Merged-chr1-155099609-3	chr1	155099450	155099650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010500)	promoter-TSS (NM_010500)	86.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	113.87	129.54	77.01	59.53	97.37	149.26	55.8	49.85	172.5	167.2	147.73	92.1
Merged-chr8-83594588-3	chr8	83594479	83594679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-88.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	138.5	143.62	191.1	179.78	166.1	208.21	150.14	148.23	238.78	258.08	286.42	159.14
Merged-chr11-21082919-3	chr11	21082814	21083014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8410.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	61.38	56.59	51.34	25.34	72.41	96.89	27.24	53.52	72.77	84.35	92.96	36.97
Merged-chr10-86778784-5	chr10	86778695	86778895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-210.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	139.31	143.12	130.63	152.43	159.55	184.07	182.03	132.06	134.73	137.07	155.27	129.07
Merged-chr8-73293856-3	chr8	73293752	73293952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	59688.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	23.42	35.21	41.07	20.11	28.23	37.32	25.58	20.44	46.22	30.63	35.17	15.98
Merged-chr3-51224790-6	chr3	51224677	51224877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009834, exon 1 of 3)	5' UTR (NM_009834, exon 1 of 3)	330.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	42.4	47.04	36.51	31.77	55.23	77.77	78.39	47.64	52.32	68.79	72.86	40.41
Merged-chr15-102065865-3	chr15	102065763	102065963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7910.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	19.79	24.4	19.97	26.95	28.23	25.71	26.24	30.64	50.94	24.6	32.66	24.43
Merged-chr4-134187192-3	chr4	134187085	134187285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-100.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	222.09	199.96	194.53	206.33	225.42	271.24	148.81	187.88	262.19	325.36	260.79	164.15
Merged-chr15-101252779-3	chr15	101252685	101252885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-14061.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	25.04	24.15	48.49	37.0	61.37	55.19	37.87	58.51	88.71	83.85	120.6	82.39
Merged-chr12-79750397-3	chr12	79750269	79750469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	174364.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	88.43	100.36	93.55	107.39	106.37	132.95	60.79	77.5	93.82	95.9	158.28	69.55
Merged-chr13-64312736-3	chr13	64312672	64312872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-62.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	139.31	160.22	160.3	154.04	176.73	171.52	108.62	154.71	284.41	196.32	317.57	158.51
Merged-chr6-24527648-3	chr6	24527509	24527709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080847)	promoter-TSS (NM_080847)	81.0	NM_001311068	68202.0	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik|CI-13kD-B	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	100.55	72.19	79.86	88.48	118.64	131.7	78.39	152.97	116.44	102.43	204.51	56.7
Merged-chr1-120265386-3	chr1	120265289	120265489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-109.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	83.99	92.81	103.25	106.58	152.19	121.67	128.55	168.0	103.46	96.4	158.28	74.24
Merged-chr12-108792323-3	chr12	108792218	108792418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-993.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	37.15	26.41	29.09	29.36	31.91	33.87	35.87	30.9	49.76	45.19	50.75	33.83
Merged-chr3-121600591-3	chr3	121600527	121600727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42858.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	35.53	33.7	39.93	26.55	56.87	74.94	38.53	53.16	83.0	78.83	83.91	41.35
Merged-chr9-88439053-3	chr9	88438960	88439160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-109.0	NM_172926	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	216.03	195.44	212.21	253.39	229.51	272.49	234.84	266.38	239.17	221.43	350.23	163.53
Merged-chr18-82911715-3	chr18	82911611	82911811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	832.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	55.32	57.6	47.35	20.91	59.32	83.41	41.85	38.86	83.99	83.35	102.0	46.36
Merged-chr15-7085282-3	chr15	7085173	7085373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44299.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	65.41	40.24	58.19	67.57	47.46	46.72	28.23	62.3	59.2	56.74	69.34	35.71
Merged-chr7-121469598-3	chr7	121469494	121469694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081327, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	77298.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	18.57	11.82	29.09	24.13	23.32	13.17	19.27	35.64	38.35	24.1	55.27	12.84
Merged-chr6-48555243-3	chr6	48555149	48555349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177736, intron 1 of 2)	RLTR42|LTR|ERVK	450.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	43.21	21.13	21.68	35.39	30.68	30.1	30.89	45.06	45.43	56.74	78.39	31.95
Merged-chrX_GL456233_random-39190-1	chrX_GL456233_random	39090	39290	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302138)	promoter-TSS (NM_001302138)	1.0	NM_001302138	20955.0	Mm.1517	NM_011515	ENSMUSG00000051412	Vamp7	Sybl1|TI-VAMP|VAMP-7	vesicle-associated membrane protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	63.14	54.23	127.13	43.86
Merged-chr12-78226419-3	chr12	78226333	78226533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-222.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	73.49	76.72	74.16	63.15	68.73	69.61	76.07	75.67	87.13	83.85	111.05	74.87
Merged-chr12-21336403-1	chr12	21336303	21336503	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	20011.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	28.67	18.86	26.81	18.1	57.68	79.96	33.88	47.05	30.49	31.63	17.59	20.36
Merged-chr11-109425813-3	chr11	109425699	109425899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025275)	promoter-TSS (NM_025275)	-147.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	215.63	250.02	201.94	199.89	211.51	306.67	173.06	157.23	343.42	349.97	279.38	175.12
Merged-chr7-45872787-3	chr7	45872701	45872901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133950)	promoter-TSS (NM_133950)	-39.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	24.23	17.86	13.12	15.69	20.05	24.46	15.28	14.89	32.85	18.58	34.67	20.68
Merged-chr3-144589281-3	chr3	144589168	144589368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	18841.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	23.42	17.61	7.42	27.75	18.0	21.95	26.91	37.65	23.6	23.1	30.65	31.01
Merged-chr6-108658587-3	chr6	108658520	108658720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2009.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	113.87	74.45	158.59	87.68	111.69	151.46	183.69	166.65	154.01	96.4	203.51	99.93
Merged-chr2-73371721-3	chr2	73371603	73371803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14777.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	17.36	15.59	22.82	30.16	24.14	22.58	18.27	37.85	35.8	17.57	42.71	24.75
Merged-chr10-82354379-4	chr10	82354301	82354501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-113126.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	21.8	21.38	20.54	20.51	33.96	30.73	23.92	28.09	15.93	9.54	16.08	14.41
Merged-chr5-137116231-3	chr5	137116144	137116344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201373)	promoter-TSS (NM_201373)	-37.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	37.96	22.89	17.68	28.56	31.91	37.94	17.27	25.93	36.98	30.63	49.24	23.49
Merged-chr5-125106371-1	chr5	125106271	125106471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	72843.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	11.71	4.28	8.56	3.22	17.18	17.56	11.96	20.72	4.33	5.02	3.01	3.13
Merged-chr7-19269775-4	chr7	19269584	19269784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	2170.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	31.09	37.98	66.17	19.31	15.55	49.23	27.57	13.21	43.07	65.27	37.69	26.94
Merged-chr1-172217351-3	chr1	172217237	172217437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009813, intron 2 of 10)	intron (NM_009813, intron 2 of 10)	2558.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	31.09	26.66	34.8	29.76	39.27	39.51	29.23	41.3	58.22	45.19	42.71	27.57
Merged-chr12-99608489-3	chr12	99608397	99608597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19477.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	49.67	36.22	48.49	45.45	45.82	45.47	35.54	47.41	62.74	46.19	35.68	16.6
Merged-chr11-118235143-3	chr11	118235057	118235257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13435.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	49.67	65.65	56.48	45.85	65.46	97.83	59.13	58.74	93.23	79.33	113.56	48.56
Merged-chr13-41596554-2	chr13	41596440	41596640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9676.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	14.54	4.78	19.4	17.29	8.59	4.7	10.63	15.2	14.36	7.53	18.59	7.83
Merged-chr14-25459604-1	chr14	25459504	25459704	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	CpG	419.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	21.0	19.12	17.68	15.69	9.0	21.32	15.94	15.36	18.88	18.58	15.07	11.28
Merged-chr15-8444110-2	chr15	8444009	8444209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	CpG	354.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	19.79	16.1	19.4	25.74	27.0	20.07	33.88	18.08	18.69	23.6	22.11	19.74
Merged-chr7-45510474-3	chr7	45510433	45510633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163662)	promoter-TSS (NM_001163662)	-125.0	NM_001163662	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	46.84	34.21	19.4	54.7	32.73	43.59	25.91	32.36	47.6	74.31	48.24	55.76
Merged-chr4-147940892-3	chr4	147940832	147941032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029841)	promoter-TSS (NM_029841)	37.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	47.65	56.59	46.21	39.42	56.46	64.28	46.5	51.87	77.3	64.27	54.77	26.94
Merged-chr1-170702494-2	chr1	170702384	170702584	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57952.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	8.08	7.8	7.42	6.44	32.73	20.07	19.6	24.28	17.51	11.55	23.62	6.89
Merged-chr17-87303697-3	chr17	87303592	87303792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	20806.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	27.86	30.43	54.19	25.74	34.36	39.82	24.91	31.85	44.84	49.71	36.18	32.27
Merged-chr7-24507474-3	chr7	24507420	24507620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110958, intron 1 of 2)	CpG	433.0	NR_110958	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	39.17	38.74	25.67	31.77	53.59	71.81	24.58	40.07	73.17	57.74	88.44	40.72
Merged-chr9-21238862-4	chr9	21238887	21239087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016679, exon 1 of 5)	5' UTR (NM_016679, exon 1 of 5)	345.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	19.79	27.67	18.83	39.42	21.27	28.22	43.18	18.7	24.98	30.13	22.11	20.99
Merged-chr10-118100792-3	chr10	118100686	118100886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41001.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	86.01	54.58	77.01	75.21	129.28	137.97	71.75	95.27	115.46	97.91	131.65	54.2
Merged-chr14-70289480-3	chr14	70289386	70289586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	11.0	NM_001360229	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	58.15	53.58	45.07	61.94	77.32	64.91	49.16	58.71	78.87	58.75	105.02	54.51
Merged-chr6-29536968-3	chr6	29536878	29537078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_012057, exon 9 of 9)	3' UTR (NM_012057, exon 9 of 9)	7696.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	30.28	30.94	26.81	52.69	18.0	25.71	25.24	41.24	35.21	25.61	29.65	19.42
Merged-chr15-6569290-3	chr15	6569192	6569392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10555.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	167.58	150.67	146.04	111.01	164.46	179.68	130.88	110.66	176.23	175.23	157.78	106.82
Merged-chr6-125191726-3	chr6	125191605	125191805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-119.0	NM_146171	68298.0	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	137.29	127.27	124.36	132.73	145.23	136.72	93.01	105.11	160.3	168.71	203.0	92.1
Merged-chr3-142700977-3	chr3	142700886	142701086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293560)	promoter-TSS (NM_001293560)	-62.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	90.45	100.86	146.04	166.91	130.5	122.29	104.63	211.09	161.87	113.98	267.32	111.84
Merged-chr16-93613803-1	chr16	93613703	93613903	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5966.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.25	17.51	4.52	17.59	12.22
Merged-chr13-52914740-3	chr13	52914656	52914856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	14921.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	42.4	54.33	50.77	47.06	75.28	86.86	102.31	59.89	73.36	82.85	86.43	46.68
Merged-chr12-80847052-3	chr12	80846991	80847191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	56559.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	70.26	68.92	86.71	98.54	50.32	48.6	71.42	54.9	61.56	40.67	71.86	40.41
Merged-chr5-144256731-3	chr5	144256607	144256807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	1482.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	41.59	56.85	52.48	50.27	61.37	91.56	65.44	51.34	99.72	97.91	70.85	42.92
Merged-chr5-67815622-3	chr5	67815529	67815729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	31802.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	83.99	69.67	113.52	106.18	72.0	83.72	82.71	108.2	102.08	93.89	100.5	60.46
Merged-chr8-46138350-3	chr8	46138173	46138373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14127.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	28.27	28.17	36.51	25.74	27.41	40.14	38.86	33.53	35.6	48.7	36.68	21.3
Merged-chr9-44268206-3	chr9	44268117	44268317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-30.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	36.34	30.94	26.81	30.16	38.46	31.67	16.28	26.33	32.06	44.19	45.22	23.49
Merged-chr7-16400179-3	chr7	16400098	16400298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-998.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	92.87	99.35	86.14	86.07	82.64	148.32	78.06	82.79	149.68	150.13	154.76	82.08
Merged-chr14-31183128-3	chr14	31183028	31183228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347583)	TTS (NM_001347583)	-14487.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	25.04	16.6	27.95	21.32	36.0	36.37	47.17	42.65	45.63	32.64	52.76	23.81
Merged-chr7-75787572-3	chr7	75787529	75787729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60709.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	23.82	34.96	43.35	45.05	36.82	54.56	30.89	55.07	44.84	41.67	46.23	23.18
Merged-chr6-133105259-3	chr6	133105182	133105382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163445)	promoter-TSS (NM_001163445)	43.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	78.74	97.09	73.59	84.86	87.55	96.89	97.33	97.57	125.68	119.5	150.74	57.33
Merged-chr7-97579718-3	chr7	97579584	97579784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	-187.0	NM_001177947	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	119.52	102.37	123.22	119.45	89.18	124.17	88.03	112.04	147.32	145.11	171.35	97.43
Merged-chr9-90232999-3	chr9	90232906	90233106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37763.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	65.01	56.34	106.68	69.18	94.91	102.22	76.07	109.46	101.49	98.91	116.07	80.82
Merged-chr11-93996128-2	chr11	93996035	93996235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	44.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	62.99	60.87	56.48	37.81	82.23	114.77	65.77	63.42	134.34	110.46	137.18	62.03
Merged-chr4-152010449-3	chr4	152010364	152010564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	1573.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	50.07	30.94	46.78	48.26	92.46	67.42	41.85	95.94	81.04	89.88	78.89	77.38
Merged-chr2-114201290-4	chr2	114201109	114201309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175466, intron 1 of 1)	CpG	223.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	14.13	19.87	19.97	24.13	13.91	24.46	22.26	16.51	20.85	27.62	22.61	30.07
Merged-chr11-120232802-3	chr11	120232696	120232896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-151.0	NM_001347621	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	64.61	71.18	58.76	62.34	40.5	52.68	19.27	42.39	105.23	107.45	112.05	55.76
Merged-chr18-12224109-3	chr18	12224017	12224217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	12269.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	72.28	46.28	81.0	57.51	90.41	92.5	46.84	88.4	91.26	105.94	128.64	77.69
Merged-chr1-95657405-3	chr1	95657291	95657491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10203.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	113.06	74.7	103.25	126.69	112.91	89.37	120.25	134.66	113.1	94.4	143.21	75.81
Merged-chr10-100835003-3	chr10	100834900	100835100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93365.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	115.49	111.18	139.19	162.49	144.0	199.12	154.13	208.96	217.93	197.33	270.34	135.33
Merged-chr10-95530904-3	chr10	95530800	95531000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	MTD|LTR|ERVL-MaLR	15738.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	64.61	43.26	42.21	41.43	47.46	49.23	36.21	48.48	49.96	58.75	64.82	28.51
Merged-chr2-51312229-3	chr2	51312142	51312342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70411.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	19.79	14.59	14.83	18.9	30.68	33.24	24.25	40.79	39.73	32.13	37.18	16.29
Merged-chr12-111438083-1	chr12	111437983	111438183	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4578.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	26.65	19.12	30.8	24.94	23.32	40.76	35.54	37.09	35.21	38.66	46.23	31.01
Merged-chr1-58727183-3	chr1	58727079	58727279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-3373.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	77.12	90.3	79.29	56.31	79.37	143.3	67.1	60.34	77.3	81.34	75.37	31.95
Merged-chr13-95942066-3	chr13	95941950	95942150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR73|LTR|ERV1	-50128.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	14.94	11.32	23.39	28.15	26.18	33.55	24.58	37.29	31.27	26.61	40.2	30.39
Merged-chr14-64639750-3	chr14	64639658	64639858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12773.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	23.82	19.87	40.5	33.38	39.68	42.65	39.86	69.48	45.04	42.68	59.29	31.33
Merged-chr6-73221763-3	chr6	73221668	73221868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164669)	promoter-TSS (NM_001164669)	-137.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	82.78	80.24	94.7	83.66	72.41	94.07	41.85	69.87	86.74	57.74	93.46	48.56
Merged-chr6-116487030-3	chr6	116486932	116487132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-6579.0	NM_146912	258914.0	Mm.391507	NM_146912	ENSMUSG00000053391	Olfr211	MOR253-9	olfactory receptor 211	protein-coding	36.34	31.94	32.52	40.22	35.59	37.94	13.29	40.79	33.04	42.68	60.8	16.29
Merged-chr16-3744027-3	chr16	3743923	3744123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-76.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	165.96	144.88	168.86	166.51	193.1	214.17	136.85	172.74	233.67	212.89	283.4	121.23
Merged-chr7-79392327-3	chr7	79392228	79392428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145946)	promoter-TSS (NM_145946)	-10.0	NM_145946	208836.0	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	32.71	30.18	31.38	32.98	35.18	56.76	23.58	36.36	42.88	51.21	64.82	28.19
Merged-chr7-127708849-3	chr7	127708738	127708938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009746)	promoter-TSS (NM_009746)	-72.0	NM_001347652	12055.0	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	79.55	87.78	45.64	64.75	80.59	99.4	58.46	64.43	93.43	112.97	116.07	34.15
Merged-chr4-141060712-3	chr4	141060588	141060788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-143.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	182.92	148.4	142.04	125.49	175.51	207.27	125.89	129.65	216.75	220.93	235.16	129.69
Merged-chr6-38714164-3	chr6	38714031	38714231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	51062.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	27.86	18.61	32.52	33.38	24.96	30.42	29.23	34.04	30.68	17.07	30.15	15.66
Merged-chr17-5466987-3	chr17	5466899	5467099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	16070.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	28.27	19.87	13.12	27.35	24.14	25.09	9.97	32.13	40.52	25.11	44.72	29.45
Merged-chr4-132732542-3	chr4	132732444	132732644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201368)	promoter-TSS (NM_201368)	2.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	84.39	75.21	95.84	96.13	122.73	101.91	76.4	99.9	110.74	113.98	109.04	72.68
Merged-chr10-7211630-3	chr10	7211531	7211731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172546, intron 1 of 12)	CpG	606.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	39.98	48.54	61.04	70.38	33.96	66.16	62.45	49.29	38.16	37.16	58.79	26.0
Merged-chr9-62838656-3	chr9	62838539	62838739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-148.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	89.64	63.39	95.84	77.62	103.91	81.22	57.47	75.76	69.43	82.85	76.38	34.77
Merged-chr8-3676459-3	chr8	3676369	3676569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	-8.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	96.91	80.24	89.56	90.09	96.96	95.01	82.38	113.16	116.44	102.93	145.22	75.18
Merged-chr12-32820946-4	chr12	32820833	32821033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021524, intron 1 of 10)	CpG	598.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	37.96	62.13	30.23	41.02	35.59	48.92	29.23	27.08	59.4	57.74	39.7	28.51
Merged-chr2-148672556-3	chr2	148672459	148672659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019761)	promoter-TSS (NM_019761)	-56.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	164.34	165.76	171.14	193.46	188.19	204.45	186.68	219.84	182.92	212.89	329.63	118.1
Merged-chr18-57354760-3	chr18	57354663	57354863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028447)	promoter-TSS (NM_028447)	30.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	46.84	39.99	46.21	30.16	46.23	56.76	47.83	62.19	51.14	54.73	63.31	35.09
Merged-chr19-38025491-3	chr19	38025340	38025540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 1 of 53)	(G)n|Simple_repeat|Simple_repeat	18137.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	44.82	39.49	55.33	67.57	69.55	68.05	70.09	68.75	78.87	43.68	80.4	52.32
Merged-chr5-132426063-1	chr5	132425963	132426163	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	116280.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	3.63	2.26	5.7	7.24	23.32	17.56	13.62	20.83	0.39	1.0	1.0	0.31
Merged-chr18-67800069-3	chr18	67799982	67800182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045376)	promoter-TSS (NR_045376)	-25.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	55.72	41.5	65.6	54.3	83.87	77.14	49.16	61.88	104.64	95.9	144.71	52.32
Merged-chr5-72796469-3	chr5	72796364	72796564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-43687.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	63.4	42.51	41.64	69.98	52.77	45.15	33.55	66.39	52.91	60.75	60.3	25.37
Merged-chr7-98656732-3	chr7	98656616	98656816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-147.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	140.52	152.43	156.31	139.16	169.78	211.03	114.6	138.51	153.02	180.26	153.26	129.38
Merged-chr17-56476499-3	chr17	56476381	56476581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011218)	promoter-TSS (NM_011218)	-1.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	46.84	33.45	30.8	24.53	36.0	43.27	37.54	27.59	40.32	60.25	48.24	29.45
Merged-chr15-88129110-2	chr15	88129006	88129206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-185768.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	23.42	17.86	17.11	30.97	51.14	57.38	63.11	75.42	0.79	0.0	0.0	0.31
Merged-chr10-9880581-3	chr10	9880483	9880683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	Lx|LINE|L1	20457.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	20.19	12.07	18.83	43.44	26.59	40.14	52.48	66.2	24.59	32.13	20.6	24.43
Merged-chr8-88288960-3	chr8	88288860	88289060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-106.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	21.8	15.59	23.39	18.1	12.68	21.95	22.59	21.9	23.6	20.59	29.14	20.68
Merged-chr12-40379694-3	chr12	40379590	40379790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	66100.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	28.67	34.71	45.07	34.99	33.96	47.04	17.27	33.08	46.42	34.14	42.21	22.24
Merged-chrX-12587702-3	chrX	12587600	12587800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027439)	promoter-TSS (NM_027439)	-59.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	112.26	115.45	117.51	127.9	135.0	158.67	100.65	138.65	145.94	157.16	186.92	94.92
Merged-chr10-117288417-3	chr10	117288309	117288509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013590, exon 4 of 4)	3' UTR (NM_013590, exon 4 of 4)	4459.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	62.99	50.81	69.03	84.86	52.77	84.35	57.13	59.83	56.84	59.75	94.47	39.16
Merged-chr10-25284609-3	chr10	25284513	25284713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	14550.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	31.5	33.2	45.07	52.29	54.41	42.02	45.84	74.94	61.96	51.21	69.34	48.56
Merged-chr14-30876235-3	chr14	30876152	30876352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3005.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	30.28	17.36	46.21	27.75	33.96	25.71	30.56	54.48	26.16	18.58	47.74	21.3
Merged-chr1-60409568-3	chr1	60409421	60409621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198571)	promoter-TSS (NM_001198571)	-98.0	NM_001198571	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	35.94	29.18	32.52	14.48	31.91	36.06	36.21	32.58	32.06	44.69	50.75	38.22
Merged-chr15-12375763-3	chr15	12375638	12375838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54242.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	59.36	39.24	53.62	43.04	72.82	86.55	35.54	70.54	78.87	66.78	91.45	45.74
Merged-chr6-91741098-3	chr6	91741001	91741201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 8 of 14)	intron (NM_009320, intron 8 of 14)	57034.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	36.75	25.66	47.92	46.25	54.82	65.54	58.79	85.63	36.58	36.15	59.8	58.89
Merged-chr18-37924415-3	chr18	37924301	37924501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	11075.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	24.63	11.57	27.38	17.7	41.73	45.78	35.87	37.18	31.08	56.24	35.17	35.71
Merged-chr14-120327290-3	chr14	120327183	120327383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	20831.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	75.51	80.74	79.86	77.22	88.37	120.73	82.05	105.84	106.01	112.97	99.99	57.01
Merged-chr8-11497509-3	chr8	11497385	11497585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	-21.0	NM_001190357	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	86.01	74.45	116.37	68.78	104.73	96.89	71.42	126.76	117.82	100.92	201.5	68.61
Merged-chr12-87408065-3	chr12	87407955	87408155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19700.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	31.5	15.85	27.95	24.53	36.0	26.97	34.55	36.17	32.26	29.62	67.84	16.92
Merged-chr6-83165831-3	chr6	83165788	83165988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	-36.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	23.42	26.16	16.54	17.29	26.18	26.03	28.9	20.33	26.36	31.63	26.13	24.75
Merged-chr11-121354474-3	chr11	121354355	121354555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	-8.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	152.63	162.99	150.6	129.91	137.05	193.16	123.9	102.17	194.33	189.29	146.72	130.95
Merged-chr13-119790880-3	chr13	119790765	119790965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-59.0	NM_001302549	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	102.56	70.68	80.43	90.49	96.96	121.98	85.04	108.95	168.96	141.59	258.28	112.46
Merged-chr2-112379183-3	chr2	112379091	112379291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-20.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	97.31	66.65	74.73	68.78	83.46	94.07	72.75	130.57	94.41	82.35	151.25	70.48
Merged-chr9-108832577-3	chr9	108832457	108832657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359572, intron 2 of 35)	CpG	6512.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	74.3	57.6	74.16	60.33	72.82	125.74	85.7	84.87	119.59	117.49	172.85	61.4
Merged-chr17-48324480-3	chr17	48324384	48324584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8322.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	79.95	57.85	97.55	88.89	91.64	103.79	137.19	121.68	104.83	115.99	169.84	78.63
Merged-chr1-60180424-3	chr1	60180321	60180521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-178.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	262.06	197.2	238.45	195.87	254.46	275.0	187.68	249.2	307.62	295.24	345.21	188.9
Merged-chr6-120091097-3	chr6	120090994	120091194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2286.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	41.19	31.44	27.38	31.77	52.37	46.72	34.55	68.52	52.52	38.66	56.28	34.77
Merged-chr6-127561291-3	chr6	127561199	127561399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16676.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	32.71	15.34	26.81	29.36	35.59	32.61	32.22	34.57	34.03	20.59	48.74	30.7
Merged-chr18-60803742-3	chr18	60803657	60803857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-92.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	175.65	208.77	150.03	138.76	120.28	189.4	78.39	73.82	281.07	251.55	254.76	157.57
Merged-chr10-37190230-3	chr10	37190111	37190311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	43.61	38.48	57.05	50.27	53.18	60.52	38.2	74.94	59.01	55.73	49.75	40.1
Merged-chr8-126839661-3	chr8	126839564	126839764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9356.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	58.95	28.67	91.84	45.85	83.05	95.01	95.0	120.56	93.43	92.39	125.12	83.96
Merged-chr11-51594975-3	chr11	51594882	51595082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10225.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	73.09	51.56	42.78	57.11	46.64	72.12	30.23	47.05	49.17	48.7	65.83	39.78
Merged-chr15-53415996-3	chr15	53415893	53416093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69810.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	28.67	27.67	35.37	39.01	23.73	47.35	28.23	37.93	51.14	36.15	81.9	39.78
Merged-chr13-106998796-3	chr13	106998693	106998893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	23321.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	18.17	14.84	42.21	41.02	42.55	21.95	23.25	43.74	35.8	28.62	42.71	23.49
Merged-chr10-58351868-3	chr10	58351768	58351968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359116)	promoter-TSS (NM_001359116)	-95.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	50.88	41.5	71.31	56.71	71.18	90.0	56.14	67.68	84.97	71.8	93.96	45.42
Merged-chr4-83417643-3	chr4	83417513	83417713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152448)	promoter-TSS (NR_152448)	-111.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	98.12	120.23	124.36	140.37	123.55	132.01	114.93	189.08	135.32	68.79	176.87	67.04
Merged-chr19-7383024-3	chr19	7382907	7383107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	4.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	50.88	51.81	39.36	48.26	60.96	45.47	41.52	48.31	40.52	42.18	43.72	23.49
Merged-chr2-150311424-3	chr2	150311317	150311517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51348.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	81.97	73.19	92.98	127.1	119.05	99.4	81.71	121.85	134.34	152.14	224.61	116.85
Merged-chr6-31385775-3	chr6	31385679	31385879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	12994.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	19.38	28.67	43.35	29.36	42.55	34.81	26.57	55.21	43.27	48.2	80.4	43.86
Merged-chr3-122577590-3	chr3	122577486	122577686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 2 of 15)	Lx8b|LINE|L1	-35905.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	31.09	39.74	43.35	37.81	29.05	37.0	32.22	44.58	53.3	49.71	64.82	34.77
Merged-chr8-124722070-3	chr8	124721989	124722189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026855)	promoter-TSS (NM_026855)	-50.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	148.19	132.81	146.04	120.26	173.87	167.76	105.96	148.91	219.9	231.47	309.03	109.64
Merged-chr3-20057760-3	chr3	20057667	20057867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009210)	promoter-TSS (NM_009210)	-44.0	NM_009210	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	56.53	59.36	69.6	102.56	123.55	111.63	74.74	122.44	169.74	129.04	193.46	95.86
Merged-chr5-120505576-3	chr5	120505547	120505747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2024.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	17.36	19.12	17.68	8.85	29.46	52.37	19.27	23.16	28.32	29.12	27.64	10.96
Merged-chr13-37779515-3	chr13	37779424	37779624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46514.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	31.5	22.39	29.09	31.37	36.82	38.26	37.2	40.29	33.04	18.58	33.16	17.86
Merged-chr11-115060833-1	chr11	115060733	115060933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	RSINE1|SINE|B4	1206.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	14.13	6.29	38.79	24.13	1.64	2.51	1.0	2.13	3.54	1.0	3.52	6.89
Merged-chr11-101645571-2	chr11	101645463	101645663	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17614.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	23.73	41.71	21.59	23.61	22.03	20.08	20.1	12.22
Merged-chr13-41552821-3	chr13	41552705	41552905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-53411.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	16.96	20.88	40.5	22.12	15.14	22.58	22.59	21.42	36.19	29.62	37.18	22.24
Merged-chr2-113398358-3	chr2	113398253	113398453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-42711.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	58.95	62.63	66.17	44.24	58.5	74.0	76.73	82.04	100.9	61.26	73.36	65.79
Merged-chr1-132008075-3	chr1	132007972	132008172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007923, intron 1 of 4)	CpG	467.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	31.9	30.18	26.81	39.01	33.55	55.5	30.23	50.44	63.53	84.86	71.86	43.86
Merged-chr4-141656001-3	chr4	141655891	141656091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	8124.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	26.65	26.16	53.62	37.81	41.32	56.76	51.49	59.1	62.35	51.72	73.36	53.26
Merged-chr11-115412882-3	chr11	115412777	115412977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347645)	TTS (NM_001347645)	7042.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	32.3	18.61	15.97	28.96	35.59	26.34	14.62	22.79	26.36	22.09	29.14	20.05
Merged-chr15-66555560-3	chr15	66555453	66555653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172514, intron 3 of 9)	intron (NM_172514, intron 3 of 9)	5493.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	31.09	34.71	53.62	31.77	29.05	37.32	18.27	58.18	48.98	37.66	49.24	33.21
Merged-chr14-70066172-3	chr14	70066063	70066263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11282.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	199.07	251.28	280.66	296.42	280.24	322.98	229.2	236.97	306.44	307.29	413.04	216.47
Merged-chrX-9662991-3	chrX	9662889	9663089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025975)	promoter-TSS (NM_025975)	-6.0	NM_025975	67117.0	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	37.15	30.94	54.19	39.82	41.73	57.07	23.92	45.03	61.37	69.29	97.48	45.42
Merged-chr16-21995486-3	chr16	21995378	21995578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083894)	promoter-TSS (NM_001083894)	64.0	NM_001289582	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	60.97	53.58	39.93	26.95	74.05	135.78	33.88	49.82	79.27	74.31	49.75	26.63
Merged-chrUn_JH584304-31661-1	chrUn_JH584304	31561	31761	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28028.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	152.63	198.83	158.78	69.86
Merged-chr6-121226319-3	chr6	121226229	121226429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017379)	TTS (NM_017379)	15595.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	30.69	28.42	33.09	21.72	25.77	23.52	19.93	23.24	35.21	26.61	31.66	17.54
Merged-chr2-152741858-3	chr2	152741760	152741960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5609.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	37.15	32.7	35.94	41.83	36.41	45.15	34.55	40.79	54.29	57.74	44.72	41.66
Merged-chr9-59291519-3	chr9	59291422	59291622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-50.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	136.89	139.85	102.68	104.97	162.0	180.62	90.35	112.21	179.58	200.34	175.87	98.05
Merged-chr4-126677603-3	chr4	126677516	126677716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011970)	promoter-TSS (NM_011970)	-27.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	115.49	118.72	89.56	90.09	134.6	135.46	55.8	86.13	147.32	186.28	168.33	106.82
Merged-chr10-62578487-3	chr10	62578367	62578567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-10.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	96.91	82.0	95.27	78.03	125.59	116.65	64.44	112.46	141.62	160.17	157.78	90.22
Merged-chr1-88705969-3	chr1	88705870	88706070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3779.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	41.19	50.05	40.5	56.71	54.0	52.37	25.24	42.08	65.5	65.78	78.89	40.72
Merged-chr15-85811694-3	chr15	85811590	85811790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164625)	promoter-TSS (NM_001164625)	7.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	120.33	98.6	127.21	95.32	115.78	118.22	55.14	95.94	106.41	122.51	135.67	74.87
Merged-chr6-99388845-3	chr6	99388758	99388958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	46487.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	24.63	22.89	34.23	30.97	32.32	34.81	45.51	65.36	38.75	29.12	48.24	26.94
Merged-chrM-13779-2	chrM	13679	13879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											45080.15	48509.18	50810.57	59422.59	40716.44	49357.93	53456.6	60037.75	0.0	0.0	0.0	0.0
Merged-chr2-57232558-3	chr2	57232450	57232650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5128.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	78.74	55.34	101.54	122.67	77.32	65.22	73.41	107.52	149.09	105.44	158.78	104.63
Merged-chr13-49188112-3	chr13	49188004	49188204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	CpG	557.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	158.29	176.32	172.28	122.27	170.6	277.51	189.01	193.07	253.33	271.64	330.13	163.53
Merged-chr15-80042347-3	chr15	80042250	80042450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	25.84	18.86	25.1	18.5	24.55	31.67	15.28	29.47	29.11	35.15	41.2	21.3
Merged-chr13-21717631-3	chr13	21717542	21717742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	14.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	29.07	39.99	34.8	49.47	38.86	33.24	32.22	23.97	20.85	35.15	18.09	28.51
Merged-chr2-157063587-3	chr2	157063508	157063708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15657.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	40.78	36.72	59.33	54.3	69.14	47.98	52.15	61.99	46.42	35.65	49.24	29.45
Merged-chr10-7063205-3	chr10	7063149	7063349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40064.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	73.49	69.67	86.71	135.94	72.82	67.1	87.36	94.09	81.63	55.73	69.85	54.51
Merged-chr1-43933896-3	chr1	43933806	43934006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310540)	promoter-TSS (NM_001310540)	-88.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	185.34	191.66	184.83	190.24	200.05	260.27	147.48	187.51	283.03	258.08	312.04	158.51
Merged-chr4-133666367-2	chr4	133666264	133666464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356466, intron 2 of 3)	L2|LINE|L2	6283.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	19.38	20.63	17.68	18.5	20.46	15.99	12.95	18.11	8.46	5.02	5.53	6.58
Merged-chr2-34802269-3	chr2	34802157	34802357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2345.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	86.82	90.8	74.16	93.31	112.09	133.9	64.77	85.43	141.81	126.53	160.29	92.41
Merged-chr7-45451514-3	chr7	45451400	45451600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	8386.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	35.94	41.5	40.5	42.23	34.36	56.13	17.61	45.7	52.12	64.77	63.82	44.17
Merged-chr6-54075676-3	chr6	54075576	54075776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	35744.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	27.05	37.23	29.09	31.77	29.46	34.49	27.57	44.24	59.99	71.3	91.45	39.16
Merged-chr5-139555979-3	chr5	139555910	139556110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12112.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	65.01	63.13	69.03	83.26	74.05	72.44	69.76	67.29	26.16	24.1	28.14	20.05
Merged-chr5-120165210-3	chr5	120165079	120165279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-25916.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	47.65	41.0	51.91	53.09	62.18	64.91	35.87	62.75	64.12	43.68	71.86	19.42
Merged-chr8-31111720-3	chr8	31111647	31111847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-99.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	107.01	127.02	119.8	141.57	160.37	194.42	135.86	164.02	97.75	96.4	118.59	60.15
Merged-chr3-108591304-3	chr3	108591187	108591387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	9.0	NM_001358054	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	111.85	107.15	132.92	126.29	127.64	139.54	108.62	140.8	108.57	132.05	176.87	74.56
Merged-chr10-95236504-3	chr10	95236421	95236621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	87188.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	107.81	61.88	158.02	131.92	94.5	89.37	120.25	141.2	78.87	78.83	138.18	81.45
Merged-chr3-90000054-3	chr3	89999960	90000160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001165984)	TTS (NM_001165984)	1300.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	51.28	39.49	36.51	32.18	44.18	56.76	29.56	34.35	44.84	43.68	50.75	28.51
Merged-chr11-3149633-2	chr11	3149559	3149759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	25638.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	14.13	17.1	11.41	15.28	39.68	16.31	19.6	17.22	0.98	0.0	0.5	2.82
Merged-chr9-23570347-3	chr9	23570243	23570443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	347267.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	14.94	26.91	25.1	27.75	32.73	26.03	18.6	44.94	24.19	21.59	36.68	24.75
Merged-chr11-109011869-3	chr11	109011776	109011976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	91527.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	423.58	562.92	435.26	372.03	145.23	185.01	149.14	89.22	168.37	184.27	178.38	277.87
Merged-chr1-184484964-3	chr1	184484855	184485055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72736.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	27.05	22.64	40.5	39.42	30.68	21.64	26.91	47.78	20.06	23.6	46.73	18.17
Merged-chr1-89069670-3	chr1	89069575	89069775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-740.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	84.8	108.66	116.94	88.08	98.18	127.94	93.34	130.46	117.42	99.92	152.25	74.56
Merged-chr7-132813825-3	chr7	132813703	132813903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	-607.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	49.67	39.99	42.78	38.21	39.68	43.27	21.92	42.45	34.22	23.6	48.74	26.94
Merged-chr13-112464056-3	chr13	112463970	112464170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010560)	promoter-TSS (NM_010560)	0.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	98.93	69.67	104.96	109.8	120.69	125.43	65.44	134.64	153.81	145.61	217.57	93.67
Merged-chr5-65764072-3	chr5	65763979	65764179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024917, intron 1 of 19)	CpG	558.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	23.82	19.12	17.68	8.85	17.18	17.87	8.97	17.22	16.33	30.63	38.19	17.86
Merged-chr4-88432609-3	chr4	88432501	88432701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	6325.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	22.21	29.18	33.66	30.97	23.73	38.88	21.26	48.06	48.39	56.24	61.3	28.82
Merged-chr18-80224495-3	chr18	80224400	80224600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	17633.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	81.57	83.76	132.35	137.15	140.73	137.97	109.28	191.58	37.17	38.16	56.78	24.12
Merged-chr5-135907490-1	chr5	135907390	135907590	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_018871)	TTS (NM_018871)	19571.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	2.42	2.52	0.57	3.22	11.45	9.41	8.97	15.39	2.36	14.56	5.02	3.76
Merged-chr3-19201508-3	chr3	19201397	19201597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 2 of 7)	RSINE1|SINE|B4	13202.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	14.54	18.36	41.64	18.5	129.69	153.02	103.97	156.9	125.29	135.07	176.87	79.26
Merged-chr7-132576360-3	chr7	132576270	132576470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	28.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	176.86	217.07	139.76	122.27	117.82	208.84	130.54	120.17	196.69	238.5	258.78	106.51
Merged-chr5-143315246-4	chr5	143315091	143315291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172726, exon 1 of 6)	5' UTR (NM_172726, exon 1 of 6)	169.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	18.17	25.91	18.83	24.53	18.0	20.7	20.26	15.84	22.82	16.57	24.62	18.17
Merged-chr5-28036973-2	chr5	28036892	28037092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34420.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	23.82	13.83	48.49	28.56	23.73	16.62	19.93	31.21	33.04	16.57	32.66	24.75
Merged-chr12-73603733-4	chr12	73603619	73603819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	18923.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	22.21	22.13	17.11	26.95	58.5	52.05	58.79	52.99	40.91	37.66	32.16	23.49
Merged-chr1-88257204-1	chr1	88257104	88257304	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 37 of 41)	MLT1A|LTR|ERVL-MaLR	12204.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	2.83	1.51	0.0	5.63	4.09	1.57	3.32	3.81	1.18	3.01	4.02	3.45
Merged-chr14-63103214-3	chr14	63103128	63103328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19234.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	91.26	66.65	123.79	102.56	110.87	109.12	100.65	133.4	112.9	108.96	125.62	92.41
Merged-chr10-121739847-3	chr10	121739740	121739940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359720)	promoter-TSS (NM_001359720)	-90.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	92.87	82.75	92.98	71.99	89.18	88.43	76.07	90.7	67.46	73.81	79.39	67.67
Merged-chr10-40136182-3	chr10	40136069	40136269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	6085.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	40.38	34.46	46.78	42.23	56.87	79.33	40.86	59.52	48.78	60.75	71.35	46.05
Merged-chr19-12574247-3	chr19	12574133	12574333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026640, intron 1 of 3)	intron (NM_026640, intron 1 of 3)	708.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	18.57	35.47	23.39	22.12	17.18	28.22	25.58	22.04	27.54	27.11	25.12	15.04
Merged-chr9-103208032-3	chr9	103207940	103208140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133977)	TTS (NM_133977)	-5975.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	65.41	57.6	54.19	49.47	61.37	93.44	53.81	84.87	86.94	68.79	105.02	33.83
Merged-chr17-24351645-1	chr17	24351545	24351745	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-378.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	4.44	4.78	5.13	6.44	6.55	6.27	4.32	2.66	11.6	11.05	20.1	12.53
Merged-chr11-77467258-3	chr11	77467110	77467310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139129, intron 4 of 8)	CpG	3297.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	24.23	35.97	27.95	31.37	28.23	40.76	19.27	31.46	30.68	21.59	27.64	14.1
Merged-chr8-106338094-3	chr8	106337996	106338196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-108.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	172.42	157.46	175.7	179.78	169.78	194.42	140.18	176.83	226.19	245.53	303.5	137.84
Merged-chr9-123931907-3	chr9	123931807	123932007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36785.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	110.24	77.22	143.76	155.65	123.55	85.92	131.54	118.91	88.9	81.34	123.11	57.33
Merged-chr15-102671157-3	chr15	102671063	102671263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-116.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	169.59	164.75	126.07	133.13	168.55	222.64	113.93	166.65	178.0	173.23	179.39	100.87
Merged-chr16-4913172-3	chr16	4913055	4913255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	-25956.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	87.22	70.93	101.54	64.75	102.28	119.47	69.09	117.73	130.99	129.54	189.94	61.71
Merged-chr15-6267122-3	chr15	6267036	6267236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32653.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	27.86	28.67	41.07	30.97	32.32	30.42	15.94	41.58	35.21	34.65	25.63	14.72
Merged-chr10-99929395-3	chr10	99929312	99929512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-86409.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	63.4	53.58	42.78	57.51	60.55	79.33	35.54	64.29	78.09	65.27	76.38	38.22
Merged-chr12-111039227-3	chr12	111039148	111039348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-550.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	137.69	141.86	153.45	128.3	183.69	216.05	128.88	172.77	197.67	178.75	259.28	124.68
Merged-chr5-77310250-5	chr5	77310154	77310354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-168.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	63.8	62.13	57.05	57.11	76.09	69.61	89.35	61.04	66.28	95.9	107.03	48.56
Merged-chr10-105271421-3	chr10	105271326	105271526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	303053.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	29.88	18.11	30.23	65.56	23.73	54.25	60.46	86.66	66.68	55.73	114.06	52.63
Merged-chr19-5107076-3	chr19	5106984	5107184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029576)	promoter-TSS (NM_029576)	-88.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	110.24	98.6	90.13	91.3	105.96	114.45	85.04	78.62	138.47	129.04	141.7	82.7
Merged-chr10-128370799-3	chr10	128370694	128370894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-757.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	46.84	50.31	66.74	59.12	75.68	48.29	45.18	76.74	64.71	58.75	83.91	46.05
Merged-chr16-85124062-3	chr16	85123959	85124159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	49648.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	34.32	27.67	53.05	53.89	41.73	39.82	46.17	77.75	41.3	29.62	85.92	36.03
Merged-chr1-95667677-3	chr1	95667578	95667778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-84.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	92.87	96.08	98.12	109.8	104.73	92.19	75.07	136.96	146.34	112.47	202.0	74.24
Merged-chr15-83149763-3	chr15	83149678	83149878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	133.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	54.11	54.83	29.66	47.86	33.14	82.47	47.83	28.09	47.21	59.75	55.27	31.95
Merged-chr5-138441466-3	chr5	138441362	138441562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028130)	promoter-TSS (NM_028130)	-14.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	26.65	20.12	17.11	16.89	35.59	48.6	8.97	25.01	34.81	39.67	53.26	26.0
Merged-chr18-20886584-3	chr18	20886481	20886681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	MTEa|LTR|ERVL-MaLR	9497.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	21.4	23.39	35.94	28.96	34.36	21.32	34.21	39.79	31.67	33.64	31.66	21.93
Merged-chr1-174031851-2	chr1	174031767	174031967	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172648)	promoter-TSS (NM_172648)	-112.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	2.42	1.51	0.0	0.0	22.91	31.04	16.94	21.28	40.52	54.23	29.65	19.74
Merged-chr14-21500670-3	chr14	21500576	21500776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017479, intron 1 of 16)	CpG	891.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	303.65	266.37	338.85	341.87	373.92	422.07	320.88	445.77	422.09	407.71	568.31	270.98
Merged-chr12-91588497-3	chr12	91588420	91588620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	CpG	1129.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	98.12	123.0	86.71	74.41	74.46	127.0	76.73	79.01	120.57	144.1	132.66	73.62
Merged-chr9-7837922-1	chr9	7837822	7838022	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-865.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	9.29	9.06	13.12	8.45	6.14	19.13	12.29	10.07	21.83	22.09	31.15	11.59
Merged-chr4-123914800-3	chr4	123914704	123914904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2629.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	23.02	32.95	38.79	38.61	42.55	23.52	17.61	30.14	42.68	32.13	31.15	28.82
Merged-chr19-53944661-3	chr19	53944568	53944768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	-41.0	NM_001195338	100503572.0	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	286.69	276.43	265.26	273.09	324.42	330.51	246.8	290.38	320.01	423.28	432.64	224.61
Merged-chr5-63828947-3	chr5	63828848	63829048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	16453.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	28.67	13.33	34.23	28.56	36.41	47.98	33.88	49.21	56.45	54.23	65.32	30.39
Merged-chr5-147076645-3	chr5	147076550	147076750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-78.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	122.75	92.31	105.53	111.81	111.69	111.0	79.06	139.09	176.04	175.23	271.84	112.46
Merged-chr11-101543675-3	chr11	101543565	101543765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8290.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	27.46	36.97	30.8	45.45	42.96	43.59	23.58	36.98	56.45	50.71	55.78	36.97
Merged-chr4-150011949-3	chr4	150011831	150012031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2908.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	22.61	16.35	28.52	16.49	31.5	26.34	19.93	19.32	35.01	35.15	30.65	20.99
Merged-chr17-5798649-3	chr17	5798519	5798719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045081)	promoter-TSS (NR_045081)	-38.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	58.95	44.27	67.31	32.98	51.96	59.89	28.23	66.93	74.54	84.86	34.67	37.91
Merged-chr10-100032773-3	chr10	100032672	100032872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	16951.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	53.7	69.17	67.31	63.15	74.05	62.71	45.18	74.75	88.51	77.32	87.43	50.75
Merged-chr10-69186471-2	chr10	69186385	69186585	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22067.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	24.23	19.37	26.81	10.86	19.23	17.56	23.92	16.35	22.62	23.6	28.14	19.42
Merged-chr11-19929318-3	chr11	19929226	19929426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	4884.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	36.34	25.66	21.11	26.95	33.96	36.69	18.93	34.65	25.77	46.7	37.69	16.29
Merged-chr6-115601947-3	chr6	115601874	115602074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023290)	promoter-TSS (NM_023290)	36.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	50.88	60.87	44.5	39.42	54.82	55.82	47.5	30.81	57.63	55.23	59.29	40.72
Merged-chr6-125231737-3	chr6	125231617	125231817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286753)	TTS (NM_001286753)	143.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	22.61	33.7	30.8	24.53	29.05	48.29	9.63	27.45	57.63	43.68	47.23	19.74
Merged-chr10-128498863-3	chr10	128498796	128498996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131150)	promoter-TSS (NR_131150)	-211.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	142.14	131.8	162.01	112.62	153.0	228.28	101.64	147.53	192.75	223.94	260.29	120.92
Merged-chr1-180777776-3	chr1	180777672	180777872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35833.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	38.36	35.21	35.37	30.16	47.46	39.2	26.24	36.14	35.4	52.22	47.74	30.07
Merged-chr15-59649223-3	chr15	59649120	59649320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144549, exon 1 of 3)	exon (NM_144549, exon 1 of 3)	566.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	17.77	23.39	27.38	25.74	28.64	32.61	18.93	22.65	30.29	33.14	35.17	20.36
Merged-chr17-71125651-3	chr17	71125561	71125761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 36 of 36)	intron (NM_001083934, intron 36 of 36)	-57871.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	39.57	27.42	48.49	37.81	29.05	31.98	17.94	48.53	38.35	36.65	45.73	31.95
Merged-chr8-126852323-3	chr8	126852226	126852426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151740)	TTS (NR_151740)	3306.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	35.53	43.51	73.02	61.94	78.96	80.59	86.7	79.49	65.1	59.75	98.99	43.54
Merged-chr17-66220557-3	chr17	66220463	66220663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97043.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	19.79	23.9	57.05	43.04	40.5	28.22	28.57	40.68	51.73	29.62	52.76	31.01
Merged-chr3-31095772-3	chr3	31095692	31095892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 1 of 6)	intron (NM_001039090, intron 1 of 6)	734.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	132.44	126.77	133.49	102.56	149.73	209.78	155.79	146.58	251.56	222.43	358.77	114.66
Merged-chr14-48446279-3	chr14	48446190	48446390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172600)	promoter-TSS (NM_172600)	-62.0	NM_172600	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	58.15	86.78	77.58	98.94	74.87	84.66	111.94	67.77	70.41	87.37	112.05	64.22
Merged-chr2-165055188-3	chr2	165055087	165055287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-449.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	57.34	60.87	53.62	37.0	49.09	132.33	30.23	24.79	88.12	93.89	76.88	29.76
Merged-chr12-69486226-3	chr12	69486147	69486347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10697.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	12.11	12.58	23.39	20.51	30.68	40.14	40.19	33.0	75.72	80.84	54.27	64.85
Merged-chr14-47649262-3	chr14	47649198	47649398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-13.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	38.36	43.26	38.22	32.98	40.5	40.45	22.92	40.77	43.66	29.62	27.64	21.3
Merged-chr8-84198559-3	chr8	84198465	84198665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9953.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	238.64	250.27	301.77	331.81	352.24	316.39	250.46	273.28	316.27	301.26	410.53	185.45
Merged-chr11-80087025-3	chr11	80086949	80087149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2351.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	47.24	24.9	21.68	30.57	39.27	53.31	25.91	31.07	57.83	49.21	53.77	33.83
Merged-chr9-21033362-3	chr9	21033279	21033479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008319, intron 2 of 10)	CpG	-1051.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	48.86	46.78	39.36	51.08	73.23	63.34	54.81	65.47	61.56	75.82	87.93	49.81
Merged-chr14-15228192-1	chr14	15228092	15228292	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-209431.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	4.04	4.28	5.7	8.04	3.27	3.76	0.66	6.48	12.59	4.02	19.6	13.78
Merged-chr5-38505539-3	chr5	38505443	38505643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3391.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	31.9	21.13	39.36	34.19	51.96	19.76	42.85	49.37	42.88	38.66	72.36	59.52
Merged-chr8-34878800-3	chr8	34878694	34878894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 5 of 26)	intron (NM_175091, intron 5 of 26)	71184.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	25.04	24.4	38.79	39.01	50.73	52.99	40.19	90.36	35.01	31.13	42.71	27.25
Merged-chr7-67645325-3	chr7	67645229	67645429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175124)	promoter-TSS (NM_175124)	-93.0	NR_028143	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	198.26	186.13	194.53	194.66	202.51	242.39	144.83	204.39	216.36	246.03	267.82	160.08
Merged-chr3-79844159-3	chr3	79844027	79844227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1465.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	21.8	22.64	37.65	40.22	38.86	29.16	22.92	40.15	27.14	25.11	38.69	19.42
Merged-chr8-66486543-3	chr8	66486457	66486657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-27.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	31.9	35.47	37.08	24.94	48.68	44.21	37.54	43.79	63.14	48.7	63.82	46.36
Merged-chr3-88142658-1	chr3	88142558	88142758	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133665, exon 1 of 11)	5' UTR (NM_133665, exon 1 of 11)	286.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	34.73	43.51	26.24	33.78	42.55	61.46	51.15	40.57	47.6	64.77	64.32	31.95
Merged-chr2-155276874-3	chr2	155276771	155276971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046364, intron 1 of 2)	CpG	507.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	44.82	39.24	35.94	36.6	52.77	55.82	29.56	46.49	52.71	51.72	76.38	30.07
Merged-chr15-76246802-3	chr15	76246718	76246918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023168)	promoter-TSS (NM_023168)	11.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	31.09	39.49	30.23	40.22	24.96	47.98	25.91	29.27	48.58	53.73	44.72	28.82
Merged-chr1-56973193-4	chr1	56973091	56973291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	1722.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	22.21	11.07	21.68	30.97	51.96	34.49	27.24	43.26	48.78	41.67	66.33	46.36
Merged-chr2-132269415-3	chr2	132269327	132269527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	6279.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	31.5	22.89	44.5	34.19	45.0	60.52	53.48	62.47	55.86	50.71	88.94	44.8
Merged-chr3-37204169-3	chr3	37204050	37204250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21265.0	NR_153188	102639848.0	Mm.424479	NR_153188		Gm12532	-	predicted gene 12532	ncRNA	71.47	50.81	49.06	49.87	60.14	59.89	43.85	69.98	56.84	54.23	87.43	39.16
Merged-chr8-13890316-3	chr8	13890195	13890395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025556)	promoter-TSS (NM_025556)	-24.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	66.63	60.62	58.19	53.09	75.68	97.52	62.78	94.49	100.7	93.89	141.7	51.69
Merged-chr16-4908091-3	chr16	4907982	4908182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21982.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	64.2	47.54	90.13	48.26	62.18	76.83	53.15	69.5	62.74	52.22	98.99	45.11
Merged-chr13-99187671-3	chr13	99187562	99187762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2839.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	39.98	27.92	54.19	38.21	35.18	23.83	24.58	47.33	34.62	35.15	33.16	22.24
Merged-chr4-126429632-3	chr4	126429538	126429738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-96.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	71.88	67.41	67.88	49.47	42.96	85.29	43.51	44.8	80.05	96.91	99.49	59.52
Merged-chr1-20951542-3	chr1	20951406	20951606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-120.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	50.88	55.34	65.03	59.12	63.41	77.77	71.75	84.39	12.78	21.09	31.66	15.66
Merged-chr18-84589062-3	chr18	84588927	84589127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 1 of 8)	CpG	477.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	21.0	33.45	31.38	24.53	28.64	25.71	36.87	25.82	25.18	21.09	25.63	23.49
Merged-chr17-63501294-1	chr17	63501194	63501394	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-714.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	7.27	5.03	0.57	7.24	4.91	5.02	7.31	10.35	3.54	2.01	4.02	3.13
Merged-chr4-142084040-4	chr4	142083950	142084150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-248.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	22.21	24.4	16.54	15.28	31.5	37.0	34.55	24.17	30.68	28.62	28.14	20.99
Merged-chr10-96338246-3	chr10	96338129	96338329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112022.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	54.92	56.34	72.45	67.57	66.68	78.08	60.46	76.01	76.51	83.35	133.66	65.16
Merged-chr14-73237930-3	chr14	73237834	73238034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175116)	promoter-TSS (NM_175116)	43.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	59.36	79.23	67.88	54.7	49.91	81.22	50.16	44.89	75.53	108.96	82.91	55.13
Merged-chr11-80177792-1	chr11	80177692	80177892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6080.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	23.82	12.58	12.55	20.91	29.86	25.71	17.27	26.66	22.62	32.64	39.7	18.17
Merged-chr11-70786110-3	chr11	70786027	70786227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21680.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	30.69	47.29	73.02	47.46	56.87	72.75	23.92	48.17	64.12	68.29	64.82	36.65
Merged-chr7-127875775-3	chr7	127875671	127875871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-129.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	53.3	69.42	44.5	54.3	53.18	83.1	46.17	50.07	80.84	90.38	84.42	48.87
Merged-chr13-45950688-3	chr13	45950574	45950774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	14317.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	37.96	41.5	34.8	29.36	37.64	43.59	29.56	39.11	69.43	54.73	55.27	35.09
Merged-chr19-21913205-3	chr19	21913127	21913327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134887.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	90.05	72.69	95.27	83.66	80.59	51.43	75.4	97.32	77.89	69.79	104.01	68.29
Merged-chr17-56074654-3	chr17	56074567	56074767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024432, intron 2 of 11)	CpG	4666.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	55.32	46.28	40.5	33.78	60.14	74.32	40.19	47.61	79.66	89.37	107.53	50.75
Merged-chr1-55029010-3	chr1	55028907	55029107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1529.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	73.49	44.02	73.59	91.7	74.46	67.1	68.76	90.42	92.64	70.8	110.04	60.15
Merged-chr7-92980978-3	chr7	92980867	92981067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98912.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	29.88	23.9	47.35	52.69	40.09	31.67	30.89	47.83	39.93	30.63	70.35	34.77
Merged-chr11-59208302-3	chr11	59208215	59208415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	-46.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	71.88	72.44	79.29	56.31	77.73	72.75	55.14	53.83	118.01	126.03	109.04	87.71
Merged-chr13-56593425-3	chr13	56593310	56593510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16176.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	23.02	18.86	34.23	32.58	24.14	24.77	16.61	30.73	37.17	24.1	52.26	34.46
Merged-chr2-44981814-3	chr2	44981709	44981909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	41368.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	56.53	48.29	75.3	30.16	89.59	80.27	47.83	48.22	64.51	44.19	101.0	42.92
Merged-chr2-77197301-3	chr2	77197193	77197393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 12 of 17)	intron (NM_175465, intron 12 of 17)	-26658.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	31.5	27.42	41.64	47.86	35.18	34.18	40.86	47.55	27.73	22.09	30.15	15.98
Merged-chr11-59809203-3	chr11	59809101	59809301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	400.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	36.75	19.62	21.68	23.73	41.73	36.37	26.91	38.19	44.25	35.15	41.2	26.63
Merged-chrX-108832844-3	chrX	108832749	108832949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081477, intron 4 of 40)	intron (NM_001081477, intron 4 of 40)	1506.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	38.36	36.47	37.65	35.8	51.14	40.14	29.56	35.1	62.35	56.24	57.28	33.21
Merged-chr12-99627967-3	chr12	99627824	99628024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045288)	promoter-TSS (NR_045288)	50.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	100.55	91.81	74.73	134.33	84.28	100.34	120.58	112.88	143.39	140.59	162.8	88.03
Merged-chr4-149792422-3	chr4	149792317	149792517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18150.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	142.94	116.96	173.42	167.32	158.73	187.2	141.17	175.04	197.28	183.77	266.32	156.01
Merged-chr1-86381203-3	chr1	86381101	86381301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6940.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	27.46	25.66	19.97	20.11	25.36	31.98	29.9	33.48	37.37	35.65	36.18	23.18
Merged-chr1-191328167-3	chr1	191328095	191328295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025864, exon 2 of 8)	exon (NM_025864, exon 2 of 8)	2230.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	40.78	40.24	47.35	43.84	40.09	62.4	27.9	46.85	44.65	39.67	56.78	33.21
Merged-chr2-118158288-3	chr2	118158169	118158369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46393.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	16.15	17.36	22.25	17.29	18.0	26.03	16.28	23.64	22.03	24.6	34.17	15.98
Merged-chr13-60356354-3	chr13	60356276	60356476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150905.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	41.19	53.32	33.09	17.7	24.55	59.89	24.25	24.11	39.73	64.77	38.69	13.78
Merged-chr16-17210200-3	chr16	17210102	17210302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	2067.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	41.59	22.89	34.8	18.9	39.27	29.48	23.58	27.28	43.47	26.61	52.76	16.92
Merged-chr9-40814224-3	chr9	40814121	40814321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12948.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	38.36	33.96	23.96	26.55	29.46	52.05	17.94	34.01	67.86	48.7	58.29	40.72
Merged-chr14-54894025-3	chr14	54893960	54894160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019402)	promoter-TSS (NM_019402)	-83.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	174.44	221.85	232.18	232.87	246.69	225.15	181.7	197.38	239.96	283.69	339.68	184.51
Merged-chr13-21753521-1	chr13	21753421	21753621	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178201)	promoter-TSS (NM_178201)	391.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	23.02	23.64	21.68	29.76	14.73	9.72	17.61	11.52	28.91	25.61	27.13	19.11
Merged-chr6-91515918-3	chr6	91515825	91516025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026309)	promoter-TSS (NM_026309)	-37.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	174.44	137.33	168.28	163.7	214.37	220.44	123.57	156.98	183.31	210.38	237.67	110.27
Merged-chr8-71542823-3	chr8	71542723	71542923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-107.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	157.48	122.49	143.76	117.44	156.69	193.47	114.93	119.64	187.44	191.8	174.86	106.82
Merged-chr10-18055528-3	chr10	18055460	18055660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111065)	promoter-TSS (NM_001111065)	-380.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	61.78	51.81	65.6	59.53	67.09	74.0	74.07	79.15	90.08	88.87	110.55	60.46
Merged-chr13-97205273-3	chr13	97205260	97205460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7003.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	22.61	17.61	7.42	27.75	20.86	25.09	10.96	17.61	14.36	21.59	21.61	20.99
Merged-chr12-100626795-3	chr12	100626683	100626883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 3 of 17)	L1M4b|LINE|L1	98337.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	65.01	63.13	78.15	72.8	54.41	70.87	59.79	88.82	65.1	60.25	75.87	40.1
Merged-chr2-75704014-3	chr2	75703956	75704156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	CpG	607.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	133.66	125.01	104.96	67.57	112.91	181.87	83.71	73.74	196.29	224.44	185.92	101.19
Merged-chr6-29211934-2	chr6	29211844	29212044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	353.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	16.96	10.06	21.11	15.28	14.73	11.92	23.58	24.31	37.37	19.58	48.24	22.24
Merged-chr12-80113041-3	chr12	80112937	80113137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-24.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	134.06	135.57	114.66	92.1	132.14	165.57	63.44	72.25	118.41	181.26	138.69	60.46
Merged-chr10-88681157-3	chr10	88681042	88681242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 1 of 5)	B4A|SINE|B4	1881.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	25.04	35.21	48.49	29.36	54.82	57.07	40.86	75.28	96.97	50.71	146.22	50.75
Merged-chr3-79562005-3	chr3	79561902	79562102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	5677.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	26.65	24.4	45.64	26.95	37.64	52.05	30.56	55.88	44.06	35.15	46.23	38.22
Merged-chr19-47579589-5	chr19	47579475	47579675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009289)	promoter-TSS (NM_009289)	-444.0	NM_009289	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	18.98	8.55	14.26	4.83	29.86	42.02	12.62	19.15	33.24	40.17	45.73	20.05
Merged-chr5-77191860-3	chr5	77191767	77191967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19338.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	33.92	33.7	50.77	39.42	16.77	28.85	19.27	16.99	48.58	52.22	69.85	34.15
Merged-chr19-56722850-3	chr19	56722763	56722963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	21.0	20.63	19.97	14.08	16.77	44.84	24.25	28.26	24.19	39.16	37.18	20.68
Merged-chrX-166478825-3	chrX	166478813	166479013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019773, intron 1 of 2)	intron (NM_019773, intron 1 of 2)	954.0	NM_019773	56382.0	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	16.56	33.2	3.42	4.02	9.41	36.06	9.63	13.23	15.74	18.08	9.04	10.65
Merged-chr10-79984401-3	chr10	79984350	79984550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-190.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	35.53	25.15	37.65	18.9	13.09	27.28	15.61	25.04	20.85	25.61	25.12	19.74
Merged-chr2-32451502-3	chr2	32451377	32451577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-7.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	81.57	86.02	105.53	76.02	84.68	86.55	39.2	64.6	111.52	87.37	116.07	60.15
Merged-chr1-181212092-3	chr1	181212085	181212285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145514)	promoter-TSS (NM_145514)	-207.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	23.82	21.38	26.24	29.76	29.46	22.26	28.23	21.08	27.14	27.11	23.62	20.68
Merged-chr1-74370102-3	chr1	74370017	74370217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033345)	TTS (NM_001033345)	-5086.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	16.96	14.34	19.97	31.77	24.14	23.52	24.58	19.15	37.57	40.17	38.69	19.11
Merged-chr2-77304741-3	chr2	77304647	77304847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24155.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	14.54	28.67	43.93	35.8	51.14	32.3	27.9	34.65	45.04	46.19	50.25	22.87
Merged-chr15-97964128-3	chr15	97964024	97964224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-105.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	58.55	55.84	46.78	57.92	55.23	80.27	27.57	42.03	81.82	80.84	68.34	57.33
Merged-chr18-82826330-3	chr18	82826222	82826422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29575.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	41.19	30.18	70.17	53.09	64.23	61.46	77.73	92.08	64.51	61.76	84.92	45.42
Merged-chr10-61114371-3	chr10	61114271	61114471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 4 of 14)	intron (NM_009163, intron 4 of 14)	25040.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	108.22	104.89	112.38	131.12	95.73	111.32	86.7	125.41	110.54	99.42	145.22	93.98
Merged-chr9-27098198-1	chr9	27098098	27098298	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_023277, exon 9 of 9)	3' UTR (NM_023277, exon 9 of 9)	57223.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	4.85	4.78	3.99	7.24	1.23	2.2	11.96	11.07	6.1	1.51	13.57	1.88
Merged-chr4-140988803-3	chr4	140988698	140988898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	1925.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	67.43	73.19	66.74	79.64	89.59	99.72	69.42	106.65	83.99	75.82	113.56	78.0
Merged-chr2-19344050-3	chr2	19343967	19344167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126563)	promoter-TSS (NR_126563)	-250.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	33.92	22.13	61.61	59.12	52.37	43.27	62.78	71.69	59.4	36.65	65.32	38.85
Merged-chr11-50134311-3	chr11	50134209	50134409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029745, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	2949.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	81.16	53.32	43.93	34.59	54.0	92.5	24.58	55.07	64.91	82.35	58.79	28.82
Merged-chr7-123124046-3	chr7	123123954	123124154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144925, exon 1 of 24)	5' UTR (NM_144925, exon 1 of 24)	169.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	69.86	72.69	58.19	32.98	50.32	72.75	78.39	61.01	47.21	62.76	54.77	40.41
Merged-chr10-25321358-3	chr10	25321261	25321461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-22198.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	23.02	12.07	19.97	21.72	38.86	40.76	36.21	44.1	46.03	37.16	56.78	14.72
Merged-chr17-29381640-3	chr17	29381546	29381746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20732.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	30.69	34.46	33.66	17.29	57.27	60.83	19.93	20.44	96.97	80.84	89.94	35.71
Merged-chr9-35267829-3	chr9	35267769	35267969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	-12.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	65.82	73.95	95.84	86.88	108.41	100.34	74.74	81.03	77.3	69.29	81.9	63.91
Merged-chr12-73607717-3	chr12	73607639	73607839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	22943.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	45.23	40.5	81.58	65.16	41.32	64.28	41.52	60.14	39.53	43.68	59.29	23.81
Merged-chr7-128379587-3	chr7	128379507	128379707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	38565.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	30.69	27.42	30.23	23.33	46.64	24.15	18.6	24.93	30.29	24.1	29.65	24.43
Merged-chr8-39619042-3	chr8	39618946	39619146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 5 of 9)	intron (NM_001113326, intron 5 of 9)	23632.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	21.4	11.57	26.81	15.69	28.64	22.58	21.26	38.66	35.8	23.1	41.2	14.1
Merged-chr5-108692486-3	chr5	108692394	108692594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1735.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	22.61	11.32	27.95	14.48	24.14	15.68	8.97	13.21	24.78	26.61	28.14	19.42
Merged-chr10-81605191-3	chr10	81605089	81605289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1119.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	28.27	26.16	19.97	28.56	41.32	31.67	23.92	33.25	36.19	33.64	44.72	20.05
Merged-chr6-52158281-3	chr6	52158173	52158373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	44.0	NM_010449	15394.0	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	52.49	37.73	45.07	30.57	29.46	29.79	22.59	25.29	56.25	38.66	54.77	27.57
Merged-chr1-131438728-3	chr1	131438627	131438827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88634.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	33.92	34.96	44.5	56.71	33.96	46.1	24.58	45.5	36.78	30.63	59.29	28.19
Merged-chr2-167769964-3	chr2	167769869	167770069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78792.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	37.96	19.62	29.66	14.88	36.0	45.78	40.52	40.82	49.57	36.15	50.75	26.0
Merged-chr7-127296267-3	chr7	127296169	127296369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008400)	promoter-TSS (NM_008400)	9.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	28.67	34.46	51.34	20.91	29.86	51.43	32.55	28.09	47.99	51.21	28.64	19.11
Merged-chr12-113075258-3	chr12	113075159	113075359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291444)	TTS (NM_001291444)	757.0	NM_001361920	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	32.71	30.43	34.23	24.53	46.23	50.17	21.59	40.6	54.68	37.66	62.31	22.56
Merged-chr4-133479988-3	chr4	133479886	133480086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175307)	promoter-TSS (NM_175307)	-147.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	126.39	118.47	93.55	127.5	123.14	175.29	129.88	105.39	187.64	199.34	193.96	103.38
Merged-chr17-46163140-3	chr17	46163073	46163273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357745, intron 1 of 11)	intron (NM_001357745, intron 1 of 11)	1109.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	21.0	25.66	29.09	19.31	15.14	20.07	8.3	15.45	30.49	24.6	30.15	24.43
Merged-chr13-67778642-1	chr13	67778542	67778742	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1051.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	0.4	0.25	0.0	0.0	0.0	3.14	0.0	1.12	55.07	30.63	58.29	24.12
Merged-chr18-35599178-3	chr18	35599070	35599270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357471, intron 1 of 3)	CpG	553.0	NM_001357472	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	34.73	25.4	37.65	20.11	26.59	37.63	14.95	25.79	41.3	31.63	43.21	19.74
Merged-chr15-75086864-3	chr15	75086775	75086975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25062.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	140.12	170.03	155.16	191.85	169.37	138.91	221.89	54.25	112.7	173.23	144.71	235.89
Merged-chr11-70468840-3	chr11	70468727	70468927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8843.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	21.4	17.1	22.25	16.09	24.14	24.46	21.59	20.78	30.09	36.65	26.13	26.0
Merged-chr4-128610180-3	chr4	128610090	128610290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-92.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	118.31	114.7	126.07	102.56	130.09	148.63	83.37	99.76	141.62	152.64	163.31	84.58
Merged-chr7-30280482-3	chr7	30280386	30280586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-65.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	56.13	67.91	75.3	68.37	78.14	118.84	50.82	48.9	119.78	95.4	134.16	68.92
Merged-chrX-7648988-3	chrX	7648894	7649094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009305, intron 6 of 6)	intron (NM_009305, intron 6 of 6)	-8385.0	NM_001290624	54630.0	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Pk3|Sfc16	prickle planar cell polarity protein 3	protein-coding	102.16	96.34	114.09	128.7	104.32	138.29	107.96	156.7	139.45	127.53	182.9	86.46
Merged-chr3-88618319-3	chr3	88618222	88618422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198911, intron 2 of 22)	intron (NM_001198911, intron 2 of 22)	2115.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	55.72	46.53	99.83	76.82	57.68	95.33	62.45	91.26	75.72	73.31	106.53	67.67
Merged-chr6-71950826-3	chr6	71950728	71950928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009088, exon 18 of 34)	exon (NM_009088, exon 18 of 34)	41775.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	47.65	22.89	48.49	41.02	35.59	20.7	38.86	42.98	44.25	41.67	32.66	33.83
Merged-chr6-127453654-3	chr6	127453559	127453759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346512)	promoter-TSS (NM_001346512)	32.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	44.42	39.74	37.65	53.89	45.0	60.52	47.83	40.15	56.25	57.24	59.8	30.07
Merged-chr2-124928093-3	chr2	124928008	124928208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140019.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	41.19	42.51	38.79	43.44	58.09	67.73	38.2	72.7	63.33	64.77	74.87	41.98
Merged-chr9-105502566-1	chr9	105502466	105502666	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	-7433.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	2.02	0.0	0.0	0.0	0.0	1.25	0.0	0.0	47.8	27.62	53.77	21.93
Merged-chr4-133888013-6	chr4	133887894	133888094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-197.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	30.69	21.38	18.83	5.23	17.59	28.85	22.59	18.08	12.39	10.54	17.08	14.72
Merged-chr7-110109344-3	chr7	110109231	110109431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12728.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	33.92	41.75	34.23	26.14	43.36	60.21	42.85	44.19	53.7	54.23	46.23	40.41
Merged-chr16-5049972-3	chr16	5049869	5050069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	-59.0	NM_028720	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	163.94	163.74	151.17	166.91	197.6	221.7	127.89	155.1	217.34	232.98	257.27	142.22
Merged-chr14-103477419-3	chr14	103477307	103477507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35934.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	77.12	70.93	111.81	88.08	76.5	77.77	82.71	102.08	99.52	106.95	75.37	69.55
Merged-chr6-146616785-2	chr6	146616683	146616883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	17809.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	27.86	27.92	30.23	15.28	24.14	12.23	49.16	30.9	0.59	3.51	0.5	0.63
Merged-chr9-63731596-3	chr9	63731495	63731695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	26399.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	76.32	75.71	117.51	123.88	95.73	97.52	92.01	124.01	105.23	130.05	152.25	78.0
Merged-chr1-192753487-3	chr1	192753406	192753606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	17713.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	30.28	39.49	65.6	53.49	45.0	45.47	25.58	66.06	63.33	52.22	74.37	41.98
Merged-chr3-9350018-3	chr3	9349899	9350099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53079.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	29.48	37.48	54.19	53.89	37.23	30.73	47.17	66.93	27.34	7.53	41.2	18.17
Merged-chr13-47226079-3	chr13	47225997	47226197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	MER54A|LTR|ERVL	32094.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	115.49	97.34	155.73	131.12	135.82	137.66	111.94	139.51	99.72	100.92	120.6	83.64
Merged-chr10-21777344-3	chr10	21777245	21777445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	86500.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	45.23	45.02	96.41	82.05	78.55	83.41	87.03	101.36	67.86	55.73	89.44	67.04
Merged-chr8-69272624-1	chr8	69272524	69272724	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	1544.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	2.02	4.53	0.0	0.8	17.18	27.91	17.94	5.1	2.75	3.51	3.01	5.64
Merged-chr15-83145713-3	chr15	83145605	83145805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	3673.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	26.25	19.87	19.4	19.71	22.09	33.55	14.95	24.73	36.39	29.62	42.21	18.8
Merged-chr3-103728152-3	chr3	103728078	103728278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9823.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	22.61	24.9	21.11	16.89	21.27	38.88	14.28	27.53	53.11	51.72	57.79	29.45
Merged-chr11-52000771-3	chr11	52000641	52000841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009458)	promoter-TSS (NM_009458)	-275.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	58.15	65.4	43.35	43.04	72.82	71.18	31.22	44.05	88.31	111.47	91.95	61.09
Merged-chr8-79639266-3	chr8	79639162	79639362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256033)	promoter-TSS (NM_001256033)	-414.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	252.37	261.59	338.28	276.71	328.92	342.74	247.8	344.72	390.43	341.43	508.01	223.67
Merged-chr7-126649494-3	chr7	126649368	126649568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029339, exon 1 of 10)	5' UTR (NM_029339, exon 1 of 10)	159.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	15.75	41.0	15.97	28.56	29.05	29.48	22.92	21.5	30.68	44.19	27.64	24.12
Merged-chr5-140617952-3	chr5	140617836	140618036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10595.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	149.4	141.11	199.09	189.44	218.87	212.6	187.01	200.97	175.84	170.72	230.64	129.69
Merged-chr19-6980524-3	chr19	6980395	6980595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360286)	promoter-TSS (NM_001360286)	-31.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	95.7	88.79	79.86	64.75	93.28	131.7	50.49	63.42	123.32	186.28	160.79	91.16
Merged-chr15-79357705-3	chr15	79357606	79357806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001304830, exon 3 of 3)	exon (NM_001304830, exon 3 of 3)	9304.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	48.05	58.86	38.22	43.44	36.41	60.52	19.93	30.84	129.62	156.66	132.15	97.74
Merged-chr15-13423630-3	chr15	13423520	13423720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-249945.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	47.24	37.23	46.21	56.71	63.82	54.56	83.04	120.98	77.69	51.72	138.18	46.05
Merged-chr10-44474423-3	chr10	44474312	44474512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15664.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	34.73	21.88	29.66	18.9	38.46	39.51	36.54	39.45	41.7	24.6	50.25	26.63
Merged-chr9-119894834-3	chr9	119894766	119894966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026236)	promoter-TSS (NM_026236)	-29.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	81.97	45.53	74.16	54.7	57.68	92.19	39.53	77.24	119.98	89.88	129.14	63.91
Merged-chr9-88858970-3	chr9	88858871	88859071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037982)	promoter-TSS (NR_037982)	-101.0	NR_037983	319673.0	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	157.48	164.75	178.55	209.95	201.69	198.49	168.74	127.88	133.94	107.45	182.4	97.43
Merged-chr12-99392154-3	chr12	99392041	99392241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	CpG	57933.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	65.01	50.31	54.76	46.25	76.5	97.52	44.84	63.84	73.95	85.36	102.51	65.16
Merged-chr14-52104285-3	chr14	52104173	52104373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360176)	promoter-TSS (NM_001360176)	-252.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	278.62	287.75	313.75	281.54	323.6	384.75	299.62	307.38	347.74	394.66	406.01	234.64
Merged-chr16-16099955-3	chr16	16099841	16100041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	46910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	51.69	30.43	59.9	56.71	58.5	41.39	46.17	65.94	43.66	34.65	53.77	21.3
Merged-chr9-77931087-3	chr9	77930998	77931198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	13733.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	33.52	29.68	29.09	31.77	36.82	67.73	47.83	54.67	43.07	43.18	40.7	34.15
Merged-chr9-118763036-3	chr9	118762975	118763175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	51383.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	12.92	14.84	18.83	14.88	29.05	31.04	31.56	32.86	20.85	11.55	24.62	15.35
Merged-chr4-119294651-3	chr4	119294571	119294771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-158.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	208.76	192.67	191.1	158.47	204.14	202.57	137.19	187.32	240.75	248.54	290.43	160.08
Merged-chr9-61702599-3	chr9	61702469	61702669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211941.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	121.14	126.77	147.18	116.64	114.14	173.41	115.93	95.47	152.04	137.07	180.39	68.29
Merged-chr14-66183327-3	chr14	66183229	66183429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	RLTR49|LTR|ERVK	30495.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	38.36	34.71	57.62	51.48	40.09	44.84	35.87	47.89	60.19	43.68	54.77	36.03
Merged-chr13-30604124-3	chr13	30604033	30604233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10910.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	27.46	24.9	31.38	24.94	25.36	38.88	30.56	34.71	38.16	27.11	42.21	16.92
Merged-chr11-118349068-3	chr11	118348979	118349179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	6332.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	28.27	19.87	38.79	27.35	38.05	26.34	23.58	46.4	30.68	19.58	35.17	28.19
Merged-chr11-3159547-2	chr11	3159450	3159650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33913.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	61.78	55.84	51.34	45.45	79.78	64.91	53.81	49.09	0.0	0.5	1.0	0.0
Merged-chr18-53254641-3	chr18	53254495	53254695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8933.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	93.28	64.64	105.53	80.04	91.23	86.55	95.33	126.79	107.79	86.86	136.68	82.7
Merged-chr6-129351362-3	chr6	129351291	129351491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177686, intron 1 of 5)	intron (NM_177686, intron 1 of 5)	1147.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	58.15	67.41	66.74	33.38	92.05	153.65	77.06	65.52	130.4	125.53	84.92	46.36
Merged-chr8-107588473-3	chr8	107588368	107588568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	14.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	109.43	94.07	110.67	96.13	100.64	131.07	65.44	109.79	115.65	131.05	148.23	67.04
Merged-chr12-91590228-5	chr12	91590091	91590291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031391)	promoter-TSS (NM_031391)	296.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	143.75	126.02	141.47	113.42	194.73	191.91	97.66	128.08	197.67	223.94	234.16	130.32
Merged-chr9-63721723-3	chr9	63721627	63721827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	36267.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	35.53	34.71	55.9	28.96	48.68	83.1	40.19	39.9	60.97	49.21	68.84	30.07
Merged-chr18-77794714-3	chr18	77794615	77794815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	165.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	30.69	28.67	41.07	19.71	24.14	50.17	38.2	24.34	47.6	45.69	60.3	25.37
Merged-chr1-39847248-3	chr1	39847160	39847360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040465)	promoter-TSS (NR_040465)	70.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	54.51	51.81	78.15	43.04	62.18	90.31	53.15	53.69	78.28	102.93	97.48	41.35
Merged-chr1-88702184-3	chr1	88702107	88702307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	-16.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	85.2	76.46	81.0	84.86	98.59	124.17	74.74	88.29	85.17	104.44	103.01	71.42
Merged-chr2-152766615-3	chr2	152766516	152766716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289739, intron 3 of 4)	intron (NM_001289739, intron 3 of 4)	12443.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	22.61	25.91	15.4	28.56	38.86	35.75	14.62	17.55	23.6	25.61	30.15	12.22
Merged-chr2-31759921-3	chr2	31759818	31760018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283045)	promoter-TSS (NM_001283045)	-21.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	32.71	14.34	25.1	21.72	26.59	27.91	16.61	28.01	30.09	26.11	31.66	24.43
Merged-chr10-87956725-3	chr10	87956617	87956817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9954.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	25.44	18.61	50.2	42.63	24.55	26.34	28.57	39.31	39.14	30.63	45.22	27.57
Merged-chr18-38631739-3	chr18	38631642	38631842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30474.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	37.15	41.5	31.38	32.98	42.55	41.71	34.21	43.51	40.32	45.19	51.25	38.85
Merged-chr5-121594086-3	chr5	121593995	121594195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-271.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	20.19	14.59	19.4	22.93	36.0	31.98	25.24	29.78	19.47	26.11	37.69	18.8
Merged-chrX-12091191-3	chrX	12091080	12091280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-10627.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	29.07	40.5	21.68	32.58	27.0	41.71	34.55	25.79	32.85	40.17	27.13	19.11
Merged-chr2-129380950-3	chr2	129380861	129381061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9822.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	46.44	34.96	26.81	46.25	31.91	32.93	13.95	40.77	42.29	44.69	49.24	34.77
Merged-chr15-76722774-3	chr15	76722648	76722848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-575.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	30.28	33.2	43.93	24.94	49.91	55.19	16.28	31.82	45.04	56.74	58.79	26.31
Merged-chr1-176853423-3	chr1	176853344	176853544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-17311.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	31.09	19.37	29.66	24.94	31.5	26.03	20.26	50.83	34.03	47.7	37.69	24.43
Merged-chr4-126086212-3	chr4	126086130	126086330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-10423.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	58.15	57.6	71.31	36.2	62.59	117.59	42.19	44.97	80.05	79.83	92.96	41.66
Merged-chr10-78009842-3	chr10	78009750	78009950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-43.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	63.8	73.45	85.0	79.23	78.14	99.4	53.15	77.5	95.79	82.35	128.64	48.24
Merged-chrX-71296229-3	chrX	71296144	71296344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164190, exon 10 of 15)	exon (NM_001164190, exon 10 of 15)	-68516.0	NM_001313702	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	18.57	15.85	23.96	22.93	19.23	19.13	13.29	17.5	21.64	20.59	27.13	17.54
Merged-chrX-36903529-3	chrX	36903427	36903627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029891)	promoter-TSS (NM_029891)	-628.0	NM_029891	77286.0	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	102.16	65.15	83.86	91.7	94.5	97.52	56.8	75.73	107.59	135.07	107.53	82.7
Merged-chr5-76184443-3	chr5	76184334	76184534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011626, intron 1 of 5)	CpG	554.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	19.38	24.9	22.82	28.15	35.59	22.58	40.52	25.88	43.86	31.13	34.67	26.63
Merged-chr7-66109373-3	chr7	66109275	66109475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081163)	promoter-TSS (NM_001081163)	-140.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	35.53	34.96	41.07	38.61	31.91	55.82	26.57	35.19	57.83	54.23	55.78	31.33
Merged-chr1-92906964-3	chr1	92906879	92907079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-10.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	73.89	62.38	59.33	71.59	66.68	83.41	57.8	86.24	112.9	109.96	137.68	71.11
Merged-chr15-31339077-1	chr15	31338977	31339177	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	L1MB4|LINE|L1	28682.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	1.01	0.57	0.8	2.86	4.7	13.95	18.81	3.15	4.02	3.01	1.88
Merged-chr10-59702543-3	chr10	59702464	59702664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291443)	promoter-TSS (NM_001291443)	1.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	153.04	146.39	139.19	154.04	173.87	174.03	89.35	135.95	162.86	161.68	176.87	90.85
Merged-chr5-63968958-3	chr5	63968779	63968979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	18.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	124.37	108.91	151.17	115.03	118.23	137.34	130.21	135.0	160.3	162.68	203.0	100.56
Merged-chr2-152344015-3	chr2	152343905	152344105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	55.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	21.0	19.37	18.83	19.71	25.77	23.52	12.29	25.43	19.87	11.55	25.12	10.02
Merged-chr2-101796632-4	chr2	101796562	101796762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	CpG	1045.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	35.53	40.5	43.93	28.56	42.14	61.77	31.56	40.26	40.52	55.23	48.74	34.46
Merged-chr18-36465210-3	chr18	36465099	36465299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-10704.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	81.16	69.67	83.29	80.84	87.96	90.0	57.8	81.17	88.9	95.9	92.46	50.12
Merged-chr5-64834438-3	chr5	64834336	64834536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30913.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	108.22	106.65	89.56	71.59	128.87	150.83	88.69	84.03	122.54	123.02	98.49	42.29
Merged-chr17-44078830-3	chr17	44078736	44078936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329619)	promoter-TSS (NM_001329619)	34.0	NM_001329619	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	46.44	45.02	55.9	47.86	11.86	26.34	22.92	21.0	66.09	58.75	69.85	36.03
Merged-chr14-14863930-3	chr14	14863825	14864025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 19 of 34)	intron (NM_001195229, intron 19 of 34)	43110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	18.57	19.87	30.8	38.61	18.82	24.15	6.64	29.89	41.3	24.1	43.21	21.62
Merged-chr5-117417625-3	chr5	117417530	117417730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	3628.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	73.09	72.69	132.35	97.33	72.82	108.81	69.76	125.36	105.42	97.91	175.37	82.7
Merged-chr7-141172806-3	chr7	141172727	141172927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172100)	promoter-TSS (NM_001172100)	24.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	53.3	64.39	77.01	62.34	56.87	66.16	38.86	59.86	78.48	80.84	90.45	50.75
Merged-chr11-110731861-1	chr11	110731761	110731961	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-236172.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.81	0.75	2.85	4.42	3.68	3.14	2.99	6.5	1.18	0.5	8.04	2.82
Merged-chr1-106540409-1	chr1	106540309	106540509	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009741, exon 2 of 2)	3' UTR (NM_009741, exon 2 of 2)	6222.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	4.85	7.55	7.99	16.89	17.18	6.9	11.96	29.41	8.46	10.54	9.55	15.35
Merged-chr15-74920853-3	chr15	74920754	74920954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34197.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	46.84	45.02	45.64	53.09	23.73	41.39	24.25	43.63	54.48	52.22	49.75	30.7
Merged-chr1-181888977-3	chr1	181888885	181889085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46584.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	29.48	42.76	37.08	31.37	37.23	37.0	17.94	27.45	54.48	71.3	47.74	40.72
Merged-chr10-93081654-3	chr10	93081569	93081769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347060)	promoter-TSS (NM_001347060)	-73.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	24.63	19.12	18.83	18.5	20.86	26.03	10.3	20.27	51.34	79.83	61.3	34.77
Merged-chr9-82974341-3	chr9	82974241	82974441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1148.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	38.36	53.58	34.8	43.84	77.73	63.97	45.51	77.8	93.03	82.85	119.09	58.58
Merged-chr1-74238319-3	chr1	74238221	74238421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1804.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	35.94	31.44	38.79	28.56	27.41	30.1	22.92	40.43	34.81	26.11	43.72	27.25
Merged-chr15-100677939-3	chr15	100677820	100678020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-8420.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	65.01	23.14	39.93	34.59	26.59	28.22	24.25	32.44	41.11	34.14	51.25	29.76
Merged-chr10-67536184-3	chr10	67536083	67536283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1686.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	31.9	29.18	22.82	33.78	26.18	27.59	16.94	33.03	35.8	54.73	40.7	34.77
Merged-chr18-38930574-3	chr18	38930461	38930661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-11862.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	30.69	30.43	26.24	28.96	32.73	31.36	16.28	36.45	22.23	26.11	40.7	14.1
Merged-chr19-5844490-1	chr19	5844390	5844590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	988.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	31.09	24.9	44.5	19.71	21.27	27.91	15.61	14.94	24.0	40.17	28.64	31.64
Merged-chr9-106257986-1	chr9	106257886	106258086	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2C1|LTR|ERVL	-10032.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	5.65	1.26	2.28	0.0	1.23	0.63	1.0	0.25	29.9	19.58	29.65	15.35
Merged-chr3-100922202-3	chr3	100922092	100922292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-301.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	308.9	351.38	357.11	374.05	384.56	446.21	360.07	457.96	446.88	481.52	627.6	288.21
Merged-chr10-42502040-3	chr10	42501923	42502123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-31.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	244.7	309.63	261.27	318.94	292.51	331.45	280.02	274.01	367.22	376.58	473.84	211.45
Merged-chr16-76218544-3	chr16	76218447	76218647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95934.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	65.82	30.94	53.05	40.22	57.27	61.46	63.44	97.01	52.91	35.65	101.0	31.01
Merged-chr5-32881385-2	chr5	32881291	32881491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360014, intron 7 of 40)	RMER6-int|LTR|ERVK	17670.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	20.19	11.82	21.11	20.91	15.96	5.96	22.26	15.08	0.0	0.0	0.0	0.0
Merged-chr15-57912992-3	chr15	57912912	57913112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 1 of 19)	intron (NM_001356310, intron 1 of 19)	813.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	81.16	66.4	94.7	101.35	33.96	15.68	10.96	31.71	120.18	105.94	155.27	66.73
Merged-chr18-4804228-3	chr18	4804130	4804330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8256.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	91.26	81.24	92.98	94.52	135.82	116.02	112.27	122.05	104.83	102.93	133.16	83.96
Merged-chr5-120512063-3	chr5	120511973	120512173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	881.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	24.23	15.59	33.66	22.12	49.09	47.35	45.84	37.88	47.99	52.72	67.33	31.01
Merged-chr15-98985873-3	chr15	98985774	98985974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-91.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	84.39	70.93	83.86	38.61	63.0	121.04	38.86	36.81	119.78	97.91	91.45	52.0
Merged-chr7-16222089-3	chr7	16221979	16222179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285931)	promoter-TSS (NM_001285931)	-47.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	81.97	92.31	87.85	99.75	96.14	132.64	61.78	72.48	154.79	141.09	180.89	94.29
Merged-chr9-70391917-2	chr9	70391817	70392017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13836.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	61.38	38.48	45.64	55.1	55.64	70.24	43.85	61.26	1.57	2.01	1.0	3.13
Merged-chr10-62231295-3	chr10	62231207	62231407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197996)	promoter-TSS (NM_197996)	-89.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	121.14	80.49	127.21	123.88	101.87	131.39	92.01	125.44	141.03	158.67	195.47	82.08
Merged-chr7-25395943-6	chr7	25395935	25396135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010719)	promoter-TSS (NM_010719)	-48.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	39.57	39.49	45.64	34.99	46.23	53.62	17.94	25.68	65.5	82.35	70.35	38.22
Merged-chr2-32694227-3	chr2	32694112	32694312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-37.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	108.62	104.13	91.84	87.28	137.87	156.16	118.25	132.45	156.96	134.56	192.45	81.76
Merged-chr9-108560396-3	chr9	108560312	108560512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011830)	promoter-TSS (NM_011830)	-89.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	143.75	116.96	123.79	108.19	114.55	161.49	78.39	78.28	181.54	178.75	153.26	74.87
Merged-chr11-59209286-3	chr11	59209194	59209394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024210, intron 4 of 6)	intron (NM_024210, intron 4 of 6)	933.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	29.48	16.35	15.4	16.89	30.27	26.34	18.27	21.03	21.24	33.64	44.72	22.87
Merged-chr9-119983835-3	chr9	119983718	119983918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-39.0	NM_001357562	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	176.46	170.79	130.06	108.59	144.82	197.24	74.07	121.82	230.13	234.48	255.76	89.28
Merged-chrX-38565107-3	chrX	38565013	38565213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028288, intron 2 of 22)	CpG-15651	11083.0	NM_028288	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	29.88	21.63	17.68	26.55	29.05	31.04	28.23	36.9	38.75	51.21	43.21	37.59
Merged-chr2-85048482-1	chr2	85048382	85048582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-1978.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	15.75	17.61	18.83	14.88	24.96	12.86	21.59	21.34	15.74	30.63	30.15	19.42
Merged-chr19-46039625-3	chr19	46039475	46039675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	46.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	41.59	38.74	34.23	49.47	41.32	36.37	35.21	42.98	38.94	53.22	53.26	39.78
Merged-chr3-8664743-3	chr3	8664657	8664857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010423, exon 5 of 5)	exon (NM_010423, exon 5 of 5)	2281.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	41.19	33.96	48.49	47.46	60.55	47.04	29.9	63.65	55.07	51.72	80.9	35.71
Merged-chr5-136567339-3	chr5	136567253	136567453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009986, exon 1 of 24)	5' UTR (NM_009986, exon 1 of 24)	137.0	NM_001291234	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	27.86	33.45	25.67	29.36	30.27	52.05	17.61	31.21	36.58	43.18	30.65	27.88
Merged-chr19-10278875-3	chr19	10278778	10278978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25999.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	51.28	36.72	34.23	28.15	31.5	55.5	30.23	29.3	44.65	54.23	28.14	21.93
Merged-chr17-35258328-3	chr17	35258142	35258342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4852.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	44.82	34.96	19.4	37.81	34.77	43.59	27.24	32.64	31.86	40.17	27.64	23.18
Merged-chr11-109473276-3	chr11	109473153	109473353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	-24.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	45.23	37.73	51.34	34.19	29.05	35.43	29.23	35.36	67.07	38.66	65.32	41.98
Merged-chr12-112840869-3	chr12	112840762	112840962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-11341.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	20.19	11.82	22.25	22.52	24.14	25.71	16.61	16.68	17.51	18.58	29.65	20.05
Merged-chr1-172563202-3	chr1	172563156	172563356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3350.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	15.75	17.61	14.26	9.25	17.18	21.32	12.29	18.7	18.29	21.59	21.1	14.41
Merged-chr11-69881022-3	chr11	69880919	69881119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-34.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	37.55	42.51	49.06	30.97	44.59	41.08	35.87	54.98	46.42	39.16	57.79	36.03
Merged-chrX-160116196-3	chrX	160116105	160116305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163085, intron 21 of 28)	CT-rich|Low_complexity|Low_complexity	22225.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	33.11	41.25	57.62	39.82	55.23	40.14	25.91	48.25	42.88	51.72	69.85	45.74
Merged-chr1-16105822-3	chr1	16105730	16105930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-52.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	48.86	57.85	51.91	55.5	48.68	54.25	41.85	70.57	40.71	44.69	68.34	35.71
Merged-chr1-171281243-3	chr1	171281139	171281339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-53.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	129.21	135.83	136.34	138.76	146.05	176.54	70.09	111.98	124.7	136.07	202.0	97.74
Merged-chr4-150080493-3	chr4	150080402	150080602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7001.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	39.57	48.54	69.6	39.01	66.27	87.17	72.41	80.33	84.97	62.26	103.51	52.32
Merged-chr17-47737753-3	chr17	47737650	47737850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-181.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	38.76	46.28	70.17	59.93	48.27	50.17	61.45	44.83	53.11	58.24	59.29	34.15
Merged-chr7-130646888-3	chr7	130646688	130646888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45768.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	23.02	30.18	23.96	27.35	11.86	23.2	14.62	19.32	30.29	33.64	32.16	25.69
Merged-chr9-59567334-3	chr9	59567212	59567412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11025.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	39.57	34.96	41.64	31.77	40.09	38.57	22.92	40.01	46.22	45.19	39.7	25.06
Merged-chr4-54338695-1	chr4	54338595	54338795	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	512650.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	1.62	2.52	6.28	6.84	5.73	5.02	14.95	14.19	0.39	0.5	2.51	1.25
Merged-chr17-36271353-4	chr17	36271275	36271475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	56.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	46.03	68.16	62.18	59.93	36.82	68.67	58.79	43.57	66.68	74.31	72.36	55.45
Merged-chr4-71489076-3	chr4	71488987	71489187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	711806.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	18.98	21.88	22.25	20.11	44.59	27.28	21.92	52.63	40.91	31.63	55.78	21.93
Merged-chr5-124019440-3	chr5	124019344	124019544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	12816.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	47.65	30.43	73.02	45.45	48.68	54.88	35.54	51.45	49.17	40.17	60.3	48.24
Merged-chr16-92867465-3	chr16	92867365	92867565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-41391.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	102.56	88.29	140.33	132.32	150.96	154.28	137.52	149.22	166.4	148.12	162.8	129.07
Merged-chr10-8518458-1	chr10	8518358	8518558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_177387, exon 1 of 8)	5' UTR (NM_177387, exon 1 of 8)	367.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	20.19	16.85	19.97	19.71	23.32	12.23	12.62	15.84	17.51	13.05	10.55	14.1
Merged-chr18-78809018-3	chr18	78808922	78809122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-212072.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	33.92	37.48	30.8	30.97	38.86	47.35	30.89	35.44	67.86	70.29	54.77	19.74
Merged-chr4-8667346-3	chr4	8667255	8667455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23051.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	90.85	92.81	136.91	100.95	66.68	95.95	82.05	76.57	76.31	81.84	108.03	57.64
Merged-chr14-70076854-3	chr14	70076771	70076971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289925)	promoter-TSS (NM_001289925)	-574.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	116.29	108.91	101.54	74.0	78.55	137.03	54.14	63.08	124.5	127.53	160.79	70.17
Merged-chr11-51809788-3	chr11	51809688	51809888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46125.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	33.92	26.66	30.8	24.13	39.27	42.65	20.26	22.71	69.43	41.67	38.19	16.6
Merged-chr19-46338709-3	chr19	46338602	46338802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-42.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	65.01	43.26	37.65	40.22	51.96	68.36	31.22	39.14	72.58	59.25	34.17	49.5
Merged-chr11-120582139-3	chr11	120582045	120582245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-525.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	43.21	45.28	42.21	29.76	40.91	58.95	21.92	34.12	63.73	38.16	47.23	23.49
Merged-chr11-75594696-3	chr11	75594588	75594788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	5543.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	23.42	18.11	35.94	32.58	33.96	26.03	32.88	40.63	21.44	17.07	35.68	16.6
Merged-chr10-75288759-3	chr10	75288663	75288863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-28114.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	29.88	16.1	37.65	33.78	39.27	31.04	26.24	34.54	27.54	31.63	54.27	23.49
Merged-chr2-27318391-3	chr2	27318292	27318492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-71089.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	24.63	17.86	18.25	17.7	33.14	48.29	15.94	14.86	36.78	24.1	24.12	10.96
Merged-chr9-61349932-3	chr9	61349824	61350024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22442.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	143.75	121.99	136.34	134.33	137.05	178.74	97.66	116.3	113.69	144.1	171.35	84.27
Merged-chr2-155592744-3	chr2	155592664	155592864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008180)	promoter-TSS (NM_008180)	46.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	82.37	60.62	77.58	57.92	74.05	95.33	45.18	57.42	82.41	115.99	105.52	63.91
Merged-chr9-105642953-3	chr9	105642847	105643047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081309)	promoter-TSS (NM_001081309)	-48.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	75.91	64.89	44.5	62.34	65.46	71.81	28.9	53.44	79.66	75.32	76.38	41.35
Merged-chr1-43474733-3	chr1	43474622	43474822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28971.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	55.32	48.04	38.22	44.24	77.32	59.58	53.48	58.79	88.31	89.88	86.43	33.83
Merged-chr11-115139053-3	chr11	115138960	115139160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	-5068.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	90.05	78.73	72.45	79.64	113.73	142.36	89.69	98.89	115.65	107.95	143.21	84.9
Merged-chr6-67158963-3	chr6	67158871	67159071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108008.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	68.65	86.78	73.59	65.56	87.96	104.42	62.78	101.75	74.15	70.29	106.53	59.52
Merged-chr8-33641895-3	chr8	33641802	33642002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178648)	promoter-TSS (NM_178648)	74.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	18.57	29.43	30.8	59.53	38.86	38.57	49.83	44.16	28.91	48.7	39.7	25.37
Merged-chr11-119954435-3	chr11	119954327	119954527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11335.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	61.38	50.05	38.22	50.68	34.36	43.59	27.24	41.16	23.41	27.11	50.75	28.19
Merged-chr11-75458821-3	chr11	75458696	75458896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2743.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	54.51	39.74	72.45	51.08	78.55	72.75	63.78	79.35	82.81	77.32	59.29	44.8
Merged-chr3-127553185-5	chr3	127553053	127553253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	196.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	72.68	88.54	66.17	64.35	87.14	99.4	121.57	68.02	128.04	163.18	133.16	82.39
Merged-chrX-20687863-3	chrX	20687770	20687970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310456)	promoter-TSS (NM_001310456)	-84.0	NM_001310456	18555.0	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	74.7	67.16	72.45	70.38	89.59	80.27	67.1	91.46	90.67	82.85	105.02	61.09
Merged-chr2-53191329-3	chr2	53191232	53191432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-145.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	177.27	181.1	195.67	170.53	211.51	278.14	196.65	235.01	273.59	267.62	376.36	161.96
Merged-chr10-122680567-3	chr10	122680467	122680667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	1252.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	25.84	26.91	31.38	26.14	28.64	31.36	31.56	61.35	48.58	39.16	47.74	29.45
Merged-chr3-87521372-3	chr3	87521273	87521473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4205.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	128.81	105.14	176.27	122.67	141.14	200.69	143.5	162.45	119.98	150.63	179.89	103.06
Merged-chr11-11730299-3	chr11	11730197	11730397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	40120.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	79.14	72.94	122.65	121.06	130.5	117.59	129.21	139.37	96.57	115.99	148.73	77.06
Merged-chr13-101664157-3	chr13	101664049	101664249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28481.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	58.15	47.04	47.92	83.26	73.64	77.77	41.19	73.79	95.79	59.75	125.62	55.76
Merged-chr5-30907816-3	chr5	30907692	30907892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-4.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	92.87	111.43	100.97	119.86	134.19	166.82	76.07	112.65	124.7	136.57	183.91	78.0
Merged-chr4-126103300-3	chr4	126103198	126103398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-659.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	75.11	76.72	74.73	69.58	91.23	108.81	64.44	74.27	118.21	116.99	126.12	64.22
Merged-chr7-25249467-3	chr7	25249392	25249592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	CpG	1266.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	13.33	17.86	25.67	13.67	14.73	14.42	9.3	14.3	19.67	22.09	19.09	23.81
Merged-chr18-60804950-3	chr18	60804878	60805078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	1129.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	119.52	137.84	126.07	71.19	66.68	90.31	46.17	38.75	103.46	88.87	92.96	47.3
Merged-chr4-139228080-3	chr4	139227966	139228166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	33955.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	44.01	35.72	38.22	52.29	49.91	41.08	32.88	49.4	47.21	28.12	39.19	23.81
Merged-chr17-35841443-3	chr17	35841309	35841509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010833)	promoter-TSS (NM_001010833)	-89.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	233.8	274.67	234.46	246.95	246.28	329.57	172.73	203.94	298.57	320.85	304.5	151.93
Merged-chr15-102406739-3	chr15	102406618	102406818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013672, intron 1 of 5)	CpG-5406	402.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	58.95	49.55	53.62	36.2	50.32	70.55	31.22	48.14	78.28	71.8	115.57	50.12
Merged-chr10-24635640-3	chr10	24635534	24635734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40192.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	76.72	55.84	67.88	67.17	67.09	114.77	96.99	111.42	103.26	78.83	90.95	46.05
Merged-chr7-46831451-3	chr7	46831359	46831559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14345.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	39.98	30.94	37.08	37.81	46.64	35.12	24.25	41.69	44.06	59.25	59.8	35.4
Merged-chr17-50415500-3	chr17	50415407	50415607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16E1|LTR|ERVL	-94040.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	28.27	22.64	37.65	32.58	40.09	34.18	34.21	48.76	37.17	36.15	35.17	31.01
Merged-chrX-169123325-3	chrX	169123232	169123432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	10454.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	31.5	40.5	26.81	41.83	60.55	40.45	36.54	61.51	67.27	72.81	92.46	34.77
Merged-chr9-107635487-3	chr9	107635391	107635591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008138)	promoter-TSS (NM_008138)	-149.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	194.63	156.95	176.27	195.07	202.1	224.52	157.78	165.2	240.16	263.1	317.57	162.9
Merged-chr11-20468838-3	chr11	20468721	20468921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-74432.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	67.84	47.04	59.33	59.12	48.68	68.99	51.82	64.91	67.07	49.71	85.42	47.62
Merged-chr18-35752295-3	chr18	35752166	35752366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11712.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	21.4	29.18	25.67	30.97	38.86	42.96	13.29	32.83	53.7	41.17	51.76	26.31
Merged-chr4-145231928-3	chr4	145231816	145232016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	14954.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	32.71	19.12	46.78	43.84	59.32	43.59	52.48	77.16	36.98	39.67	81.9	32.27
Merged-chr10-88332556-3	chr10	88332443	88332643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	24532.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	32.71	33.7	28.52	40.62	39.68	36.06	29.9	28.6	59.99	51.21	74.87	27.57
Merged-chr2-166021264-3	chr2	166021152	166021352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	28615.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	68.65	38.99	68.45	54.3	53.59	56.13	33.88	62.8	45.83	52.72	78.89	29.76
Merged-chr13-36117522-3	chr13	36117430	36117630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	-113.0	NM_024274	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	136.08	124.0	121.51	128.7	124.37	152.71	118.92	134.1	123.72	109.96	159.79	84.27
Merged-chr9-35176026-3	chr9	35175931	35176131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027030)	promoter-TSS (NM_027030)	-44.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	36.34	31.94	19.97	32.98	48.68	40.45	36.21	32.07	66.28	56.74	89.94	30.07
Merged-chr19-29393558-3	chr19	29393457	29393657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17362.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	17.77	18.11	41.07	41.02	45.82	44.21	37.2	36.7	36.39	26.11	64.82	29.45
Merged-chr11-20249513-3	chr11	20249415	20249615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172260)	promoter-TSS (NM_172260)	-91.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	151.83	113.69	124.36	108.19	164.46	147.38	94.67	157.37	186.66	155.65	212.55	101.19
Merged-chr5-135008972-3	chr5	135008849	135009049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190437)	promoter-TSS (NM_001190437)	-203.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	194.63	188.39	162.01	162.89	224.19	264.66	135.86	157.77	282.44	293.73	260.79	163.84
Merged-chr6-91617401-3	chr6	91617303	91617503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-66664.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	23.02	13.08	40.5	28.15	38.86	35.75	27.57	50.41	42.68	39.16	68.84	25.37
Merged-chr5-43081966-2	chr5	43081866	43082066	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-151497.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	8.88	3.02	14.83	2.82	22.5	17.25	13.95	40.96	23.41	18.08	30.15	21.62
Merged-chr1-20820379-3	chr1	20820285	20820485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-73.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	163.94	173.05	171.71	166.11	211.51	230.16	132.54	232.23	243.5	247.04	275.36	137.21
Merged-chr9-103365945-3	chr9	103365847	103366047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	-167.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	259.64	247.0	243.01	262.64	283.51	344.62	237.5	270.06	388.85	427.29	488.92	248.73
Merged-chr6-83831873-3	chr6	83831760	83831960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-119.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	249.95	229.39	279.52	253.39	272.46	333.96	218.24	263.64	330.44	393.15	336.66	239.34
Merged-chr7-110616025-3	chr7	110615934	110616134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1114.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	32.3	25.66	31.38	24.13	21.68	30.73	22.26	27.45	42.68	16.57	56.78	20.36
Merged-chr15-103340173-3	chr15	103340034	103340234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013866)	promoter-TSS (NM_013866)	-48.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	24.63	20.88	12.55	22.12	21.27	20.07	11.29	14.24	22.42	26.11	25.63	14.1
Merged-chr16-90044262-3	chr16	90044164	90044364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69565.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	90.85	90.05	110.1	135.14	118.64	71.81	99.98	130.18	112.9	85.86	122.61	78.63
Merged-chr8-64726538-3	chr8	64726430	64726630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025436, intron 2 of 5)	intron (NM_025436, intron 2 of 5)	7048.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	19.38	14.09	15.4	24.53	44.59	31.98	38.2	37.79	15.93	32.64	34.67	15.35
Merged-chr1-156025289-3	chr1	156025182	156025382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	9535.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	26.25	24.9	14.83	20.91	26.18	48.92	30.89	35.33	54.68	29.62	50.75	39.47
Merged-chr19-41933393-3	chr19	41933287	41933487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164561)	promoter-TSS (NM_001164561)	-58.0	NM_001360679	74168.0	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	156.27	116.96	148.32	135.94	169.78	140.79	118.25	152.61	153.42	156.15	217.07	85.21
Merged-chr9-40329280-1	chr9	40329180	40329380	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151734, intron 2 of 18)	intron (NR_151734, intron 2 of 18)	-4192.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	3.23	4.53	0.0	4.83	2.45	5.96	2.66	7.35	3.74	6.53	3.52	5.64
Merged-chr5-92675381-3	chr5	92675306	92675506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-135.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	38.76	31.94	38.22	42.23	49.91	45.47	33.22	30.64	61.37	74.81	77.88	36.65
Merged-chr15-99341251-2	chr15	99341143	99341343	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310622, intron 1 of 25)	MTD|LTR|ERVL-MaLR	29239.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.85	4.53	13.12	5.63	33.55	44.84	16.94	23.94	27.34	28.62	33.16	17.86
Merged-chrX-53670452-3	chrX	53670352	53670552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001018063)	promoter-TSS (NM_001018063)	-44.0	NM_001018063	553127.0	Mm.328602	NM_001018063	ENSMUSG00000067924	Rtl8b	Cxx1b|Mart8c	retrotransposon Gag like 8B	protein-coding	36.34	37.98	39.93	34.99	51.14	46.72	53.15	55.37	52.12	38.66	84.92	39.16
Merged-chr7-113369885-3	chr7	113369775	113369975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-536.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	18.98	21.63	17.11	12.47	39.27	26.03	22.59	19.18	18.49	29.12	26.63	15.35
Merged-chr1-16161673-3	chr1	16161648	16161848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	55866.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	12.92	27.67	13.12	13.67	28.23	42.65	47.5	40.23	55.07	43.68	64.32	33.52
Merged-chr10-30618415-3	chr10	30618317	30618517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-51.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	128.41	146.39	145.47	164.5	179.19	176.54	192.99	150.42	200.43	255.07	281.89	154.13
Merged-chr15-89196573-3	chr15	89196461	89196661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-87.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	126.39	130.29	115.23	94.92	115.78	123.23	74.07	111.34	103.46	109.96	167.83	62.34
Merged-chr9-116178352-3	chr9	116178241	116178441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2978.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	137.29	125.51	140.9	168.92	126.41	159.61	102.64	121.07	129.62	116.99	184.91	84.9
Merged-chr9-21525351-3	chr9	21525257	21525457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	-820.0	NM_001198794	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	44.01	21.38	17.68	31.37	39.68	39.82	41.52	56.13	45.43	28.62	40.7	25.06
Merged-chr6-87042747-3	chr6	87042662	87042862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013528)	promoter-TSS (NM_013528)	-84.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	140.52	121.99	139.76	111.81	150.55	185.95	136.19	150.22	149.68	154.15	233.15	123.43
Merged-chr5-138619742-3	chr5	138619664	138619864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044747)	promoter-TSS (NM_001044747)	-21.0	NM_001044747	24135.0	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	76.72	68.42	74.16	78.43	93.28	85.29	72.41	87.93	98.54	95.4	146.22	52.94
Merged-chr4-9122824-3	chr4	9122713	9122913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-146480.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	60.57	61.62	66.17	57.11	78.96	84.66	71.08	81.0	107.0	95.9	98.49	63.91
Merged-chr5-113999599-3	chr5	113999506	113999706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-4129.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	56.13	47.29	79.86	55.5	57.68	52.05	41.52	82.82	64.12	36.65	85.92	49.5
Merged-chr7-45128943-3	chr7	45128868	45129068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-223.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	185.34	217.07	205.93	230.06	196.37	253.99	184.02	187.88	266.12	332.9	294.45	144.42
Merged-chr4-62519983-3	chr4	62519863	62520063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-54.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	208.76	188.39	185.4	240.92	222.14	213.54	178.38	274.85	84.97	110.46	122.1	67.04
Merged-chr17-33916006-3	chr17	33915890	33916090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-186.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	205.94	186.63	203.08	177.77	240.55	289.74	175.39	175.88	229.54	285.2	264.81	131.57
Merged-chr9-70328468-3	chr9	70328380	70328580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 9 of 27)	intron (NM_181072, intron 9 of 27)	77273.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	34.32	18.11	53.62	54.3	69.55	73.06	53.15	58.71	50.75	54.73	80.4	45.74
Merged-chr14-9390338-3	chr14	9390246	9390446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-493749.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	44.01	42.76	46.78	80.44	83.87	52.05	69.76	87.7	65.5	58.75	92.46	51.06
Merged-chr3-81983767-3	chr3	81983659	81983859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8031.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	16.15	16.6	22.25	21.72	49.5	37.32	46.84	41.78	55.86	41.67	47.23	35.4
Merged-chr6-86488020-3	chr6	86487860	86488060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040292, exon 1 of 2)	non-coding (NR_040292, exon 1 of 2)	267.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	16.96	14.84	28.52	19.71	15.14	21.01	28.9	18.14	22.62	25.61	39.19	19.74
Merged-chr1-172528875-3	chr1	172528770	172528970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 2 of 11)	intron (NM_027972, intron 2 of 11)	7740.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	36.75	27.67	29.66	24.94	22.91	26.97	19.6	27.06	41.89	40.67	39.19	18.8
Merged-chr1-178677992-1	chr1	178677892	178678092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	148867.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	50.47	50.31	126.07	84.46	0.0	3.14	1.99	1.54	0.79	0.0	1.0	0.94
Merged-chr7-135602463-3	chr7	135602346	135602546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-3382.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	20.59	18.11	16.54	14.48	27.82	26.97	15.28	30.48	11.8	5.52	19.6	12.22
Merged-chr10-71362011-3	chr10	71361910	71362110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14247.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	29.48	29.43	25.1	18.5	36.82	34.81	33.55	47.78	39.93	25.61	32.16	20.68
Merged-chr6-113624047-3	chr6	113623947	113624147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	26.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	54.92	42.01	38.22	36.6	24.55	51.43	30.89	30.0	53.89	49.21	52.76	22.56
Merged-chr7-135716590-3	chr7	135716489	135716689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081117)	promoter-TSS (NM_001081117)	-210.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	130.02	139.09	150.6	145.6	157.91	147.38	108.95	145.79	177.22	189.29	220.59	105.88
Merged-chr4-3683067-3	chr4	3682970	3683170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	4949.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	101.35	65.65	88.99	84.86	94.09	114.45	83.71	101.1	100.11	102.93	167.83	81.14
Merged-chr4-136886291-3	chr4	136886186	136886386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-109.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	152.63	158.97	140.33	119.45	180.41	172.78	150.14	123.48	239.37	284.69	256.27	172.92
Merged-chr1-74227503-3	chr1	74227391	74227591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9026.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	46.44	60.62	69.6	59.53	54.0	78.39	47.83	75.2	70.41	73.81	140.19	67.04
Merged-chr10-117418123-3	chr10	117418021	117418221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29314.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	36.34	26.66	44.5	23.33	41.32	45.47	44.51	53.64	64.71	54.73	66.83	40.1
Merged-chr4-86672017-3	chr4	86671937	86672137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1978.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	68.24	74.45	81.0	67.17	92.87	83.41	85.7	76.04	112.7	133.06	122.1	65.16
Merged-chr5-102497438-3	chr5	102497337	102497537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	16046.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	31.09	24.4	39.36	30.57	38.46	21.95	30.23	56.89	33.83	22.09	35.68	23.18
Merged-chr18-56820003-3	chr18	56819893	56820093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	105555.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	69.45	55.08	71.88	54.3	24.96	47.04	25.58	28.57	33.44	39.67	43.21	16.29
Merged-chr10-80702110-3	chr10	80701987	80702187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-267.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	310.92	275.42	302.91	309.69	292.1	375.66	295.96	331.49	349.32	462.44	457.26	254.69
Merged-chr4-43965154-3	chr4	43965064	43965264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7462.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	57.74	43.26	31.38	22.12	40.5	62.09	15.94	19.43	63.33	52.72	44.22	18.17
Merged-chr1-138175332-3	chr1	138175235	138175435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011210)	promoter-TSS (NM_011210)	-30.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	46.44	59.61	67.31	53.89	54.0	76.83	42.52	56.41	64.51	73.31	70.85	54.2
Merged-chr1-33903821-3	chr1	33903727	33903927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	3794.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	108.22	105.64	134.06	118.65	75.68	142.36	67.1	74.78	109.95	114.48	101.0	49.81
Merged-chr2-128360752-3	chr2	128360643	128360843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	68608.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	23.82	26.41	26.81	20.11	31.09	51.43	34.55	20.8	38.75	34.65	33.16	17.86
Merged-chr13-64266304-2	chr13	64266189	64266389	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	intron (NR_045798, intron 1 of 2)	8699.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	3.23	2.26	0.0	0.8	44.59	56.76	16.61	43.4	31.86	18.58	37.18	15.98
Merged-chr12-33311324-3	chr12	33311249	33311449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	L1MB5|LINE|L1	8834.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	48.46	31.69	63.32	51.88	61.37	52.37	36.21	62.64	55.27	39.16	70.35	38.22
Merged-chr8-120109354-3	chr8	120109278	120109478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4774.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	49.67	38.48	61.61	59.12	56.05	75.88	64.11	95.94	65.89	75.82	105.02	51.06
Merged-chr5-102070663-3	chr5	102070563	102070763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-742.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	63.8	53.58	88.99	79.23	96.55	85.61	80.39	100.96	103.85	104.44	139.19	70.8
Merged-chr9-119925476-3	chr9	119925379	119925579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028976)	TTS (NM_028976)	12079.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	14.94	13.58	23.96	19.71	21.68	28.85	33.55	41.24	16.92	16.57	41.71	14.72
Merged-chr12-111442554-3	chr12	111442458	111442658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-103.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	288.71	292.53	297.78	266.26	308.46	403.25	288.32	271.21	412.45	456.41	507.51	221.79
Merged-chr8-41373928-3	chr8	41373836	41374036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	761.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	23.82	26.91	22.82	30.97	29.86	35.43	38.53	62.78	40.71	38.16	60.8	26.94
Merged-chr10-94505488-3	chr10	94505381	94505581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9376.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	53.7	31.94	59.9	54.3	42.55	45.15	48.16	59.22	39.14	37.16	49.75	35.4
Merged-chr3-100431893-3	chr3	100431800	100432000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	5495.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	34.73	25.15	43.93	36.2	34.77	31.04	20.93	47.55	49.76	54.23	64.82	30.7
Merged-chr10-99198095-3	chr10	99198008	99198208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027740)	TTS (NM_027740)	-65123.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	38.36	16.6	36.51	26.55	37.23	30.42	27.9	43.68	24.0	32.13	22.11	20.05
Merged-chr5-135168842-3	chr5	135168736	135168936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009745, intron 1 of 5)	CpG	464.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	160.71	164.0	140.9	175.76	183.28	192.53	120.58	144.67	211.05	206.37	285.91	109.64
Merged-chr2-27028779-3	chr2	27028668	27028868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-770.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	50.47	52.07	47.35	43.44	61.77	100.66	68.76	59.02	94.61	56.74	80.9	41.66
Merged-chr1-75236956-3	chr1	75236883	75237083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159883, intron 2 of 8)	intron (NM_001159883, intron 2 of 8)	281.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	27.05	22.64	45.64	23.73	29.46	58.64	38.2	38.72	42.68	44.69	59.29	32.27
Merged-chr13-84222294-3	chr13	84222191	84222391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138587)	promoter-TSS (NR_138587)	-5.0	NR_029418	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	112.66	139.85	127.21	172.14	119.05	188.46	144.83	189.73	170.33	188.79	231.64	109.02
Merged-chr5-140389300-3	chr5	140389188	140389388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	20.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	67.43	46.28	55.33	52.29	73.23	68.99	38.53	39.59	85.36	90.88	82.41	56.07
Merged-chr5-96210090-3	chr5	96210003	96210203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-12.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	75.51	89.8	82.15	102.56	118.64	97.52	59.79	120.59	121.55	126.03	160.29	67.04
Merged-chr13-32908430-3	chr13	32908317	32908517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-10277.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	45.23	51.31	47.92	57.11	53.18	29.16	37.54	55.65	58.42	30.63	43.21	30.07
Merged-chr2-117312637-3	chr2	117312521	117312721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	30256.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	29.07	29.18	9.13	26.55	36.41	31.04	13.29	13.09	33.24	24.6	37.18	20.36
Merged-chr1-78895954-3	chr1	78895878	78896078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	MTC|LTR|ERVL-MaLR	79067.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	41.99	48.8	62.75	92.1	45.41	69.3	59.46	85.26	67.27	45.19	71.35	37.28
Merged-chr5-124377386-3	chr5	124377287	124377487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081203, intron 30 of 31)	intron (NM_001081203, intron 30 of 31)	-22759.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	21.8	33.7	54.19	30.57	28.23	26.34	19.27	32.92	39.14	40.67	48.24	34.46
Merged-chr7-30956833-3	chr7	30956767	30956967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-64.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	27.05	18.36	28.52	13.67	35.59	30.1	9.97	25.74	37.96	37.16	37.69	28.19
Merged-chr4-156202676-3	chr4	156202584	156202784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-600.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	41.19	34.46	30.23	31.37	38.46	60.83	23.25	49.37	45.04	41.67	62.31	29.13
Merged-chr11-62221265-3	chr11	62221171	62221371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27713.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	24.63	22.64	21.11	34.19	16.77	34.49	26.91	25.88	22.82	23.6	50.75	20.05
Merged-chr12-84193971-3	chr12	84193881	84194081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	34.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	189.78	185.38	203.08	162.89	195.96	261.83	118.59	152.36	239.96	211.39	225.11	126.25
Merged-chr13-17976052-3	chr13	17975946	17976146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17305.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	207.95	186.38	231.61	231.26	194.73	228.91	203.95	228.48	202.98	243.02	261.79	130.95
Merged-chr6-128839655-3	chr6	128839565	128839765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13350.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	36.34	37.98	25.1	28.56	29.86	51.74	12.95	32.89	42.29	46.7	47.74	20.36
Merged-chrUn_JH584304-13679-1	chrUn_JH584304	13579	13779	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	46010.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.55	12.55	18.09	24.12
Merged-chr7-119794080-3	chr7	119794001	119794201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027698)	promoter-TSS (NM_027698)	-29.0	NM_028129	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	44.42	32.95	29.66	34.99	48.68	56.13	29.23	65.38	55.66	62.26	81.9	39.16
Merged-chr13-41607826-3	chr13	41607727	41607927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	1611.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	23.02	12.83	29.09	17.7	24.96	26.65	24.91	28.57	21.64	23.6	40.2	19.11
Merged-chr10-94605662-3	chr10	94605568	94605768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19469.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	39.17	22.89	39.93	32.98	63.82	62.4	46.84	81.2	47.01	25.11	44.22	40.1
Merged-chr4-149989187-3	chr4	149989042	149989242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	14094.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	31.5	20.88	24.53	33.78	23.73	24.15	38.86	29.1	18.69	27.11	32.16	25.37
Merged-chr16-57391587-3	chr16	57391482	57391682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	38305.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	291.14	323.46	209.36	205.12	148.1	143.62	84.37	33.7	169.55	135.57	188.43	219.91
Merged-chr3-51708787-3	chr3	51708683	51708883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	47604.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	29.07	16.1	31.38	53.09	23.32	16.93	16.28	25.12	20.46	21.59	21.61	14.1
Merged-chr11-98863584-3	chr11	98863489	98863689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-9.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	46.03	43.77	30.8	30.16	32.32	62.09	29.56	33.06	52.71	61.76	68.34	39.47
Merged-chr4-59419372-3	chr4	59419290	59419490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	19243.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	71.07	73.95	96.98	56.71	74.87	106.3	88.03	54.2	69.04	62.26	84.92	41.98
Merged-chr16-91464983-3	chr16	91464880	91465080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_077219)	promoter-TSS (NR_077219)	-124.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	106.6	126.02	116.37	115.83	128.46	159.29	100.65	139.85	152.83	150.63	192.45	98.05
Merged-chr3-36495673-3	chr3	36495625	36495825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11084.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	30.69	32.95	27.95	38.21	40.5	54.25	36.21	48.73	34.81	48.7	52.76	23.49
Merged-chr13-12651014-3	chr13	12650924	12651124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003568)	promoter-TSS (NR_003568)	-629.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	23.02	14.34	31.38	31.77	38.05	34.49	63.44	42.59	31.27	28.12	46.73	25.06
Merged-chr9-49055576-3	chr9	49055485	49055685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012039)	promoter-TSS (NM_012039)	4.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	85.6	69.42	71.31	64.75	112.91	108.18	59.13	100.74	114.67	96.4	164.81	72.05
Merged-chr16-23591872-3	chr16	23591705	23591905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18114.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	34.32	36.47	41.64	38.61	23.73	32.93	25.91	28.21	33.63	33.64	28.64	23.18
Merged-chr7-64392686-3	chr7	64392592	64392792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	70.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	127.6	126.02	164.86	165.71	203.32	218.25	135.19	205.91	239.96	191.8	337.17	150.68
Merged-chr3-85574031-3	chr3	85573936	85574136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-93.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	140.92	161.48	180.83	147.61	167.32	228.91	134.53	202.8	175.45	211.89	267.32	132.51
Merged-chr16-17722812-3	chr16	17722717	17722917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285886)	promoter-TSS (NM_001285886)	83.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	40.78	49.05	30.23	39.82	24.14	51.43	51.82	34.79	64.32	47.7	50.25	32.89
Merged-chr4-135981681-3	chr4	135981598	135981798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5546.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	49.67	44.52	68.45	64.35	75.68	79.65	48.16	66.73	58.02	60.75	64.82	29.45
Merged-chr13-111796649-3	chr13	111796555	111796755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	12338.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	74.7	76.97	107.25	92.91	76.5	68.67	35.87	103.79	86.54	77.32	101.5	61.4
Merged-chr8-67494822-3	chr8	67494722	67494922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168577)	promoter-TSS (NM_001168577)	-53.0	NM_001168577	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	67.84	48.04	57.05	66.36	92.87	62.4	44.84	96.31	99.33	64.77	113.06	57.64
Merged-chr3-89210305-3	chr3	89210216	89210416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013604, exon 5 of 8)	exon (NM_013604, exon 5 of 8)	4019.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	133.25	94.32	118.08	141.57	87.55	88.74	109.28	135.22	114.47	81.84	136.17	102.75
Merged-chr1-51478470-3	chr1	51478365	51478565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310549)	promoter-TSS (NM_001310549)	-66.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	276.6	265.61	257.28	241.72	249.14	313.26	213.92	275.02	317.85	328.88	365.81	183.26
Merged-chr17-31110446-3	chr17	31110332	31110532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 11 of 14)	ORR1E|LTR|ERVL-MaLR	19179.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	54.51	32.45	61.04	68.78	85.5	79.33	59.79	87.53	55.86	52.72	73.86	37.59
Merged-chr1-131083734-1	chr1	131083634	131083834	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14109.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	10.9	10.31	6.28	5.63	16.36	15.99	13.62	17.52	22.42	7.53	11.56	3.45
Merged-chr2-166481117-3	chr2	166481026	166481226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33675.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	77.12	65.4	65.6	78.03	100.64	101.91	56.47	86.13	113.1	88.37	116.07	45.11
Merged-chr6-122565615-3	chr6	122565514	122565714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11805.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	32.3	46.28	63.89	42.63	44.59	71.49	23.92	27.42	43.66	56.24	66.83	26.0
Merged-chr14-55591667-3	chr14	55591557	55591757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-85.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	131.23	125.51	162.01	132.73	170.6	163.37	132.87	143.1	139.26	158.67	186.42	109.02
Merged-chr5-114691061-3	chr5	114690984	114691184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-149.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	78.74	76.97	77.01	70.79	82.23	78.08	58.79	66.28	124.7	96.4	141.7	57.95
Merged-chr13-49205631-3	chr13	49205543	49205743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026738, intron 2 of 5)	MIRb|SINE|MIR	10383.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	151.83	135.32	139.76	175.76	183.69	234.24	225.88	207.37	267.89	280.17	336.16	159.14
Merged-chr8-83104204-3	chr8	83104125	83104325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-61127.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	91.66	64.89	67.88	72.8	105.96	116.34	70.75	79.15	78.09	78.33	79.39	56.39
Merged-chr2-20969039-3	chr2	20968931	20969131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033225, exon 1 of 2)	non-coding (NR_033225, exon 1 of 2)	157.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	22.61	26.41	17.68	18.5	19.23	22.89	13.29	17.55	24.59	31.13	34.17	9.71
Merged-chr13-107810588-3	chr13	107810478	107810678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	79486.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	63.4	54.08	91.27	102.16	51.96	58.01	34.21	65.08	59.2	58.75	63.31	45.74
Merged-chrX-56454801-3	chrX	56454696	56454896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172779)	promoter-TSS (NM_172779)	-43.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	35.53	30.94	40.5	26.95	34.36	52.05	23.92	42.11	58.42	63.77	61.3	33.83
Merged-chr8-123949345-3	chr8	123949246	123949446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172288)	promoter-TSS (NM_172288)	-81.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	56.53	44.27	42.21	43.04	63.82	53.93	21.92	37.51	52.32	73.81	42.71	56.07
Merged-chr1-36446444-4	chr1	36446317	36446517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-1146.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	21.8	11.07	21.11	11.66	15.14	18.81	11.96	20.52	20.06	18.08	17.08	13.78
Merged-chr19-6870957-3	chr19	6870864	6871064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-12753.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	35.94	52.32	32.52	6.84	30.27	75.26	22.59	4.4	53.3	52.22	26.63	10.96
Merged-chr12-72085659-3	chr12	72085563	72085763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	-176.0	NM_001205067	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	302.04	348.37	377.07	343.08	370.24	435.55	338.48	365.89	406.36	452.9	559.26	282.25
Merged-chr2-59129210-3	chr2	59129108	59129308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	L1MA6|LINE|L1	31475.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	25.44	21.13	29.66	42.63	45.82	57.07	56.14	67.65	70.41	74.31	82.41	45.42
Merged-chr18-6765077-3	chr18	6764992	6765192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-75.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	209.17	240.96	256.14	261.83	260.6	313.57	208.27	262.04	299.16	272.64	413.54	173.86
Merged-chr6-38533684-3	chr6	38533582	38533782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1179.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	180.5	168.78	195.67	187.02	183.28	241.14	164.42	200.02	218.91	306.28	287.42	152.25
Merged-chr1-167306640-3	chr1	167306524	167306724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2046.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	18.98	21.13	23.39	14.08	14.73	26.97	15.28	18.98	34.62	18.08	35.68	16.92
Merged-chr13-5864555-5	chr13	5864455	5864655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	3066.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	27.86	33.7	31.38	39.01	32.73	37.32	16.28	21.31	58.02	70.8	42.21	37.59
Merged-chr6-122635506-3	chr6	122635395	122635595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	9071.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	37.55	36.97	83.86	62.34	61.77	77.45	45.51	77.44	99.33	99.92	131.15	89.91
Merged-chr11-55023228-3	chr11	55023136	55023336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10235.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	68.24	66.91	64.46	61.13	49.91	74.94	46.5	35.64	57.83	44.69	59.29	34.15
Merged-chr7-19149796-3	chr7	19149668	19149868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-70.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	33.11	51.31	37.08	39.42	39.27	78.08	22.26	37.54	71.0	80.34	77.38	46.68
Merged-chr1-153751876-3	chr1	153751777	153751977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011882, exon 2 of 9)	5' UTR (NM_011882, exon 2 of 9)	2451.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	90.85	72.19	97.55	86.88	94.09	91.25	68.43	113.24	70.41	76.32	129.64	64.22
Merged-chr11-85311219-3	chr11	85311121	85311321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-33.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	86.01	111.68	119.23	117.84	115.78	132.95	66.1	76.07	140.04	126.53	116.58	87.4
Merged-chr13-95849913-1	chr13	95849813	95850013	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	42009.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.62	2.01	0.0	0.4	1.64	2.82	0.0	0.03	24.98	31.13	37.18	21.93
Merged-chr1-172148079-3	chr1	172147999	172148199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	84.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	132.44	127.78	104.96	104.17	133.37	176.54	85.7	133.74	158.92	178.75	236.67	88.03
Merged-chr2-75829144-3	chr2	75829043	75829243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3034.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	62.99	57.1	63.32	84.46	42.55	44.21	66.77	60.62	34.62	25.61	51.76	30.39
Merged-chr12-33156491-3	chr12	33156389	33156589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	ID4_|SINE|ID	8803.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	49.67	54.08	31.95	20.91	60.96	71.49	49.49	38.83	66.68	93.89	78.39	20.68
Merged-chr2-164941224-3	chr2	164941119	164941319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-7000.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	41.59	34.96	38.22	29.76	35.18	35.75	23.25	35.75	49.37	42.68	59.8	33.21
Merged-chr14-20830112-5	chr14	20830005	20830205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6557.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	36.75	28.93	61.04	48.67	32.73	41.71	38.2	45.2	44.84	48.2	33.16	32.58
Merged-chr10-11281045-5	chr10	11281069	11281269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-161.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	94.49	120.73	116.37	111.01	94.5	141.11	149.81	117.81	120.77	118.5	151.75	77.69
Merged-chr9-59755392-3	chr9	59755272	59755472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	4198.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	51.69	30.43	31.38	36.2	40.91	40.76	24.58	43.79	43.66	39.67	41.71	18.48
Merged-chr11-114675921-1	chr11	114675821	114676021	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	CpG	453.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	12.11	12.07	9.13	16.09	18.82	14.11	14.28	10.12	12.39	16.07	20.6	18.8
Merged-chr10-128369034-3	chr10	128368951	128369151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081040, exon 1 of 5)	5' UTR (NM_001081040, exon 1 of 5)	986.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	62.18	59.36	45.07	75.61	56.87	91.88	51.49	71.89	77.1	81.34	104.52	60.46
Merged-chr11-4186719-3	chr11	4186616	4186816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134023)	promoter-TSS (NM_134023)	-117.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	111.85	81.75	73.02	78.03	124.78	121.04	64.77	90.03	116.44	134.06	178.38	70.8
Merged-chr2-163602873-3	chr2	163602767	163602967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	553.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	56.13	64.14	49.63	61.94	85.5	95.33	68.76	80.27	84.38	87.87	101.5	55.13
Merged-chr12-91711856-3	chr12	91711771	91711971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	74565.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	91.26	69.67	130.06	88.89	101.87	158.35	114.6	144.42	110.34	100.42	137.68	93.98
Merged-chr12-85374991-3	chr12	85374804	85375004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-187.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	39.17	16.6	24.53	29.76	35.18	42.02	27.57	21.7	39.93	67.78	39.7	36.03
Merged-chr2-84592969-3	chr2	84592871	84593071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56509.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	34.32	24.4	48.49	53.09	49.5	32.61	30.23	60.9	24.39	26.61	39.7	25.37
Merged-chr4-129033711-2	chr4	129033624	129033824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24547.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	21.4	30.94	17.11	20.51	14.32	52.37	13.95	8.55	44.06	37.66	32.16	14.41
Merged-chr17-71616125-3	chr17	71616000	71616200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-115.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	100.55	84.76	90.7	94.92	84.28	137.34	86.36	98.38	143.39	163.69	175.87	76.75
Merged-chr18-34651790-3	chr18	34651689	34651889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178347)	promoter-TSS (NM_178347)	-53.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	58.95	52.57	82.72	62.34	78.96	85.92	65.77	85.93	85.36	104.94	95.47	53.26
Merged-chr2-173452093-1	chr2	173451993	173452193	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-70499.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.0	0.5	0.0	1.21	1.23	3.14	4.65	3.79	13.37	5.52	15.07	2.82
Merged-chr10-125324685-3	chr10	125324592	125324792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	MLT1B-int|LTR|ERVL-MaLR	4271.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	24.23	16.1	35.37	40.22	51.14	30.42	44.84	51.03	39.53	25.11	46.23	33.83
Merged-chrX-74115697-3	chrX	74115581	74115781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11785.0	NM_008106	14539.0	Mm.284825	NM_008106	ENSMUSG00000031394	Opn1mw	Gcp	opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	protein-coding	16.15	15.34	37.65	18.9	25.77	41.71	15.28	30.36	23.6	29.62	30.15	14.72
Merged-chrX-134116589-3	chrX	134116495	134116695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4741.0	NM_172203	237038.0	Mm.67938	NM_172203	ENSMUSG00000031257	Nox1	GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1	NADPH oxidase 1	protein-coding	31.9	37.23	43.93	40.62	48.68	27.28	33.88	53.52	63.33	40.17	77.88	37.28
Merged-chr3-109255189-3	chr3	109255075	109255275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	147.79	104.89	142.61	147.21	119.46	101.28	96.33	119.22	165.41	156.15	179.39	106.82
Merged-chr10-121488849-3	chr10	121488748	121488948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12598.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	146.98	130.04	195.67	171.74	197.19	186.89	166.42	216.84	131.58	130.55	216.57	97.11
Merged-chr9-47734265-3	chr9	47734134	47734334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	83974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	188.17	183.11	233.32	221.61	204.14	259.95	179.37	197.92	257.46	255.07	301.49	197.36
Merged-chr5-124095969-3	chr5	124095857	124096057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019875)	promoter-TSS (NM_019875)	-159.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	146.98	146.14	104.96	119.45	135.82	187.52	102.64	86.89	181.74	172.22	164.81	85.52
Merged-chr10-77970652-3	chr10	77970557	77970757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-785.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	100.95	72.94	161.44	113.02	126.41	122.61	158.45	159.22	112.9	108.45	176.37	83.33
Merged-chr8-126747638-3	chr8	126747542	126747742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101378.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	33.11	21.88	44.5	53.89	45.0	19.13	19.93	38.89	35.21	31.13	56.28	26.63
Merged-chr16-16527406-3	chr16	16527301	16527501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301818)	promoter-TSS (NM_001301818)	10.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	44.01	28.42	27.38	41.43	39.27	55.5	38.86	51.65	57.24	21.09	81.4	25.69
Merged-chrX-47976758-3	chrX	47976671	47976871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58082.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	102.16	59.61	84.43	74.0	99.0	115.39	104.97	124.51	96.18	126.53	141.7	52.63
Merged-chr14-61440074-3	chr14	61439975	61440175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-128.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	212.4	250.27	213.35	222.01	257.33	313.26	257.1	243.95	281.46	310.3	319.58	186.08
Merged-chr7-28598276-3	chr7	28598176	28598376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027470)	promoter-TSS (NM_027470)	-92.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	119.12	110.67	106.1	100.95	103.5	166.19	73.74	117.87	158.53	142.1	172.85	101.81
Merged-chr2-124620676-3	chr2	124620605	124620805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	10409.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	37.55	50.56	64.46	60.73	61.77	68.99	45.18	95.41	74.15	53.73	83.91	40.72
Merged-chr18-60500114-3	chr18	60499993	60500193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	1890.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	80.36	59.61	109.53	78.83	134.6	147.07	113.6	97.77	67.07	111.97	109.54	46.99
Merged-chr8-119826185-3	chr8	119826086	119826286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	14393.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	68.24	73.45	77.58	110.2	75.68	79.02	76.07	90.25	75.53	87.37	102.51	69.23
Merged-chr15-96631383-4	chr15	96631294	96631494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	L1M2|LINE|L1	10568.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	22.21	18.36	23.39	30.57	15.55	18.81	20.59	20.05	37.76	21.59	32.66	14.1
Merged-chr4-130663265-3	chr4	130663184	130663384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159604)	promoter-TSS (NM_001159604)	-37.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	39.17	46.03	17.11	37.0	58.09	52.37	20.93	28.88	43.86	49.71	70.85	28.51
Merged-chr11-8566674-3	chr11	8566579	8566779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97856.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	166.77	149.16	205.93	127.9	164.46	220.13	118.59	154.63	153.42	147.62	180.39	84.58
Merged-chr17-71265836-2	chr17	71265741	71265941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	45170.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	81.16	71.94	94.13	52.29	116.19	142.99	66.1	93.51	1.97	3.01	3.01	1.57
Merged-chr5-35729304-3	chr5	35729198	35729398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-22.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	125.18	103.38	173.42	115.83	146.46	180.3	154.13	196.85	156.37	125.53	204.01	115.28
Merged-chr19-59071603-3	chr19	59071496	59071696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4473.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	23.02	19.62	29.66	15.69	34.77	29.79	26.57	34.65	23.8	32.13	45.73	15.04
Merged-chr12-32820245-3	chr12	32820161	32820361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-74.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	295.17	296.8	289.22	248.56	305.19	384.44	228.87	265.46	353.45	419.26	393.44	204.25
Merged-chr17-5206980-3	chr17	5206866	5207066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211801.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	22.21	40.24	49.06	37.81	54.41	56.76	34.21	66.28	53.7	76.82	62.81	51.69
Merged-chr10-21669081-3	chr10	21668979	21669179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21766.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	25.04	18.86	21.11	14.48	30.27	34.18	30.89	27.2	29.31	29.62	42.21	17.86
Merged-chr8-69902873-1	chr8	69902773	69902973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-315.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	32.3	42.51	33.66	17.7	45.82	49.86	10.96	21.53	43.86	62.76	36.18	23.49
Merged-chr9-85331730-3	chr9	85331630	85331830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4580.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	51.69	38.74	62.75	92.91	40.5	42.96	76.07	71.78	48.39	42.68	80.9	27.88
Merged-chr2-104742773-3	chr2	104742637	104742837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	64.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	65.82	85.77	61.04	87.68	51.96	84.04	97.33	64.4	48.58	51.72	58.79	33.21
Merged-chr2-30690504-3	chr2	30690400	30690600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12489.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	37.15	25.15	57.62	49.47	64.23	76.83	57.47	60.08	63.73	69.79	75.87	43.86
Merged-chr8-13685832-3	chr8	13685748	13685948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-8261.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	31.9	26.91	58.76	36.6	48.68	64.6	43.85	50.94	52.91	59.25	94.47	23.81
Merged-chr14-63117679-3	chr14	63117608	63117808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4754.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	39.57	21.88	34.23	23.73	59.73	70.24	68.76	61.54	59.01	58.75	74.37	41.66
Merged-chr14-121987477-3	chr14	121987392	121987592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-22299.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	25.04	29.93	37.65	65.16	43.77	37.94	40.86	43.12	52.71	39.67	75.87	21.3
Merged-chr9-31145708-3	chr9	31145625	31145825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13926.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	48.46	59.61	37.65	49.47	40.91	83.1	45.84	52.68	51.73	47.2	61.3	23.81
Merged-chr13-64370393-3	chr13	64370314	64370514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009984, exon 1 of 8)	5' UTR (NM_009984, exon 1 of 8)	106.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	169.59	141.11	142.61	157.26	159.55	211.35	128.22	199.21	238.39	222.43	271.84	114.03
Merged-chr9-35570195-3	chr9	35570047	35570247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-78.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	180.09	152.93	147.18	167.72	151.37	176.86	143.83	230.5	170.92	175.23	268.33	104.32
Merged-chr10-81060302-3	chr10	81060203	81060403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024499)	promoter-TSS (NM_024499)	-32.0	NM_024499	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	80.36	79.48	50.2	51.08	69.14	124.17	51.15	42.81	101.88	133.56	77.88	69.86
Merged-chr12-87388475-3	chr12	87388390	87388590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-135.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	231.37	249.01	285.23	285.96	289.24	348.38	231.86	278.38	327.88	384.61	337.67	183.57
Merged-chr6-72958405-3	chr6	72958293	72958493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039392)	promoter-TSS (NM_001039392)	90.0	NM_025284	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	20.19	21.63	23.39	18.1	27.41	26.65	24.25	22.93	26.95	13.56	22.61	17.23
Merged-chr17-65782857-3	chr17	65782738	65782938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	-517.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	19.38	56.09	45.07	45.85	40.5	51.74	52.48	33.03	45.24	57.24	50.25	35.4
Merged-chr17-34959341-3	chr17	34959171	34959371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-33.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	77.12	57.1	32.52	63.15	51.55	90.62	71.42	24.98	71.4	68.79	78.39	45.11
Merged-chr15-81858267-3	chr15	81858147	81858347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	79.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	16.56	26.16	20.54	12.07	24.14	32.3	10.96	12.73	44.65	47.2	40.7	30.07
Merged-chr1-59482040-3	chr1	59481941	59482141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-106.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	209.17	182.11	180.83	230.86	204.14	242.71	176.71	208.12	223.44	235.99	286.92	154.44
Merged-chr2-157133903-3	chr2	157133793	157133993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	BC1_Mm|scRNA|scRNA	1329.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	19.79	14.84	21.11	16.89	24.14	26.34	32.88	30.06	26.55	29.62	32.66	29.45
Merged-chr3-155093367-3	chr3	155093269	155093469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028938)	promoter-TSS (NM_028938)	9.0	NM_029330	75540.0	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	173.63	160.98	207.08	185.01	186.55	206.33	194.98	201.31	280.48	252.06	329.13	146.3
Merged-chr4-6357577-3	chr4	6357469	6357669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8111.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	54.92	62.13	57.05	69.58	76.91	108.18	63.78	85.91	105.62	98.91	131.15	53.26
Merged-chr8-122912249-3	chr8	122912144	122912344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63870.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	18.98	7.04	26.81	35.39	29.05	26.03	20.93	29.13	57.43	47.7	62.81	20.05
Merged-chr4-33247776-3	chr4	33247652	33247852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033225, intron 1 of 1)	CpG	1035.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	247.53	292.53	303.48	287.97	338.74	399.49	257.76	355.38	403.8	434.32	569.31	302.3
Merged-chr5-17857476-3	chr5	17857387	17857587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-7695.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	112.66	97.09	116.94	119.05	166.51	158.04	103.31	155.69	130.6	117.99	161.8	73.3
Merged-chr4-63815858-3	chr4	63815763	63815963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	45421.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	26.25	25.66	31.95	54.7	34.77	24.15	26.24	46.54	41.11	44.19	41.71	48.24
Merged-chr9-119341152-3	chr9	119341045	119341245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-149.0	NM_130864	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	252.37	220.09	241.3	209.14	213.55	295.39	204.29	187.96	290.9	336.91	304.5	189.53
Merged-chr13-113446358-3	chr13	113446275	113446475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045501)	TTS (NR_045501)	56469.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	30.28	14.34	60.47	51.08	50.73	35.75	82.71	89.94	32.85	24.1	56.28	31.01
Merged-chr17-6008804-3	chr17	6008698	6008898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357667, intron 7 of 24)	intron (NM_001357667, intron 7 of 24)	1218.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	48.46	45.02	49.06	72.4	81.0	68.05	53.15	90.17	60.78	59.75	59.29	56.7
Merged-chr17-10764503-3	chr17	10764410	10764610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75681.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	41.59	31.94	47.92	46.66	32.73	22.89	27.9	44.64	32.26	32.13	45.73	22.87
Merged-chr3-59260951-3	chr3	59260864	59261064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	2021.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	29.88	43.51	43.93	66.36	36.41	53.93	31.89	52.46	33.44	20.59	34.17	24.12
Merged-chr14-44986489-3	chr14	44986418	44986618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1593.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	82.78	56.09	83.29	79.23	88.78	101.91	70.09	77.02	75.53	74.81	69.34	38.22
Merged-chr8-84200995-3	chr8	84200864	84201064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7554.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	157.48	137.84	89.56	85.67	126.82	182.81	71.75	52.09	135.52	205.86	136.68	98.99
Merged-chr17-78265382-3	chr17	78265291	78265491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	65143.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	50.88	51.31	35.37	47.46	56.87	61.77	30.23	65.52	55.27	51.72	71.86	44.17
Merged-chr13-73604000-3	chr13	73603907	73604107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	5.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	114.68	129.03	111.24	111.41	121.91	138.29	93.34	132.73	154.2	162.68	221.59	100.87
Merged-chr8-41395483-2	chr8	41395384	41395584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-20787.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	12.92	12.83	21.68	22.93	13.5	22.26	11.63	16.46	0.0	0.5	0.0	0.0
Merged-chr10-93944361-1	chr10	93944261	93944461	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19502.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.66	0.0	39.53	50.21	31.15	13.47
Merged-chr6-113333256-3	chr6	113333170	113333370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133926)	TTS (NM_133926)	6294.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	25.04	17.86	26.24	23.33	36.82	30.42	19.6	40.4	42.09	28.62	51.25	35.09
Merged-chr13-54216015-1	chr13	54215915	54216115	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	23882.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.81	1.51	0.0	1.61	2.05	0.63	1.0	0.25	76.71	50.71	86.43	57.64
Merged-chr8-111027771-3	chr8	111027690	111027890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190800)	promoter-TSS (NM_001190800)	-20.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	52.9	32.95	64.46	34.99	37.64	46.1	36.54	54.31	54.68	52.72	78.89	47.62
Merged-chr9-121719040-3	chr9	121718943	121719143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-138.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	244.7	256.56	212.21	157.26	230.73	328.31	159.44	170.38	359.35	334.9	364.3	172.92
Merged-chr10-69352952-3	chr10	69352846	69353046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007659)	promoter-TSS (NM_007659)	-34.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	86.82	65.9	80.43	88.89	120.69	95.01	70.09	120.42	138.08	140.59	129.64	73.3
Merged-chr13-55429486-3	chr13	55429378	55429578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2674.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	119.93	113.19	131.78	134.33	119.87	176.54	109.62	126.08	163.84	142.1	190.44	116.54
Merged-chr2-164879397-2	chr2	164879299	164879499	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	31.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	19.79	23.64	11.41	15.69	27.0	21.32	15.28	21.53	39.14	33.14	24.12	24.12
Merged-chr17-34105026-3	chr17	34104946	34105146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-9737.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	41.59	44.27	55.33	34.19	26.18	22.89	10.3	20.02	54.88	27.11	37.18	27.88
Merged-chr15-25354931-3	chr15	25354839	25355039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58825.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	38.76	24.65	84.43	47.06	101.46	104.73	133.86	157.88	142.01	73.31	164.31	63.28
Merged-chr6-47790923-3	chr6	47790832	47791032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR31F_MM|LTR|ERVK	12720.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	54.92	25.66	48.49	25.34	42.55	47.66	30.56	22.93	74.54	69.29	87.43	37.91
Merged-chr3-105803815-3	chr3	105803736	105803936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2455.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	86.82	78.48	100.4	63.95	112.91	102.54	80.05	75.95	97.75	120.0	136.17	60.77
Merged-chr11-109472284-3	chr11	109472189	109472389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	CpG	940.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	25.44	27.17	42.78	29.76	18.41	36.37	23.92	15.25	17.11	18.58	29.14	18.8
Merged-chr17-5785423-3	chr17	5785287	5785487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13270.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	22.61	14.09	25.1	20.91	13.5	27.91	17.27	26.55	14.36	16.07	17.59	15.98
Merged-chr7-91716914-3	chr7	91716813	91717013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-345481.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	38.76	35.21	52.48	86.07	60.55	51.11	50.16	82.29	30.49	11.55	50.75	17.86
Merged-chr2-153147427-3	chr2	153147303	153147503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13898.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	16.56	14.59	35.94	22.52	28.64	26.97	22.59	30.53	28.52	48.7	49.24	36.34
Merged-chr5-137883130-3	chr5	137883037	137883237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11379.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	17.36	19.62	39.93	31.77	37.23	39.82	44.18	41.66	40.12	38.16	45.22	24.43
Merged-chr19-21127579-3	chr19	21127485	21127685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22875.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	124.77	121.49	139.19	159.27	152.6	162.43	134.53	149.78	165.22	174.23	232.15	120.61
Merged-chr17-55892028-3	chr17	55891917	55892117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-76.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	52.9	57.1	56.48	57.11	65.46	80.27	50.49	36.14	80.05	95.9	136.68	52.0
Merged-chr3-60469490-3	chr3	60469400	60469600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3330.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	60.97	63.13	82.72	81.65	57.68	69.61	56.14	39.17	75.72	81.34	70.35	49.5
Merged-chr1-52500028-3	chr1	52499943	52500143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008667, intron 1 of 7)	CpG	405.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	41.19	23.39	31.95	27.35	29.86	37.63	37.2	38.94	45.63	37.16	46.23	32.58
Merged-chr13-76055413-3	chr13	76055308	76055508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175495, exon 1 of 1)	3' UTR (NM_175495, exon 1 of 1)	1588.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	34.73	23.9	29.66	47.06	18.82	22.89	16.94	37.54	28.13	19.08	35.68	14.72
Merged-chr11-114879847-3	chr11	114879736	114879936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10205.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	66.22	50.56	81.0	68.37	60.14	60.21	50.16	55.88	68.84	74.31	83.91	47.62
Merged-chr14-115040881-3	chr14	115040771	115040971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2800.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	60.97	66.65	56.48	60.73	87.14	71.81	59.13	116.89	97.16	79.33	107.53	46.99
Merged-chr14-70100083-3	chr14	70099987	70100187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-6.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	41.19	35.21	45.64	35.39	47.46	63.97	29.23	42.84	65.1	55.73	60.8	33.21
Merged-chr2-167072048-4	chr2	167071945	167072145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6752.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	26.65	36.47	21.11	26.55	31.5	32.93	28.23	24.31	30.88	48.2	27.64	28.82
Merged-chr17-73067132-3	chr17	73067013	73067213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40872.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	37.96	33.2	41.07	46.25	42.55	53.62	59.79	74.05	58.22	51.72	57.79	32.58
Merged-chr9-94362773-3	chr9	94362678	94362878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175303.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	37.55	30.43	58.76	64.75	27.82	27.91	46.84	74.72	40.52	31.63	66.83	33.83
Merged-chr15-38662446-1	chr15	38662346	38662546	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	542.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	10.9	8.55	15.97	13.67	15.55	11.92	14.95	16.77	18.88	14.56	15.58	20.05
Merged-chr4-118180115-3	chr4	118179998	118180198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-55.0	NM_001161823	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	171.61	165.25	175.13	173.35	231.55	205.08	168.74	212.08	229.14	232.47	331.14	180.44
Merged-chr17-24426629-3	chr17	24426527	24426727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-56.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	103.37	95.08	114.66	117.04	134.19	130.76	84.7	115.29	125.09	104.94	152.25	84.27
Merged-chr10-71285296-3	chr10	71285194	71285394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145420)	promoter-TSS (NM_145420)	-32.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	35.13	37.98	34.23	40.62	54.82	52.37	36.87	62.89	43.47	38.66	67.33	39.47
Merged-chr8-122432545-3	chr8	122432452	122432652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	388.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	113.47	123.75	106.68	62.74	98.18	178.11	92.68	66.5	160.3	148.62	124.11	61.09
Merged-chr3-21991897-3	chr3	21991801	21992001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	39.57	33.45	41.64	43.44	31.09	40.45	39.2	53.07	62.55	38.66	64.32	31.64
Merged-chr18-20809867-3	chr18	20809758	20809958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-63454.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	84.8	78.73	104.96	111.41	102.68	115.08	108.29	108.84	108.97	88.37	114.57	104.63
Merged-chr9-124423224-3	chr9	124423118	124423318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027950)	promoter-TSS (NR_027950)	-33.0	NR_027950	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	140.12	153.68	148.89	153.64	122.73	192.85	93.67	100.18	184.49	212.89	205.01	146.61
Merged-chr1-182283451-3	chr1	182283368	182283568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007853)	promoter-TSS (NM_007853)	-667.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	43.61	27.42	26.24	34.99	47.87	52.99	44.18	51.84	70.41	69.79	63.31	48.87
Merged-chr19-46504321-3	chr19	46504237	46504437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2689.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	77.53	84.26	96.41	80.04	95.73	127.31	132.87	97.96	104.83	105.94	152.75	81.76
Merged-chr5-66075250-4	chr5	66075171	66075371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	22908.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	39.57	22.89	33.66	28.15	48.27	42.65	48.16	34.85	28.72	46.19	31.66	20.36
Merged-chr9-21510202-3	chr9	21510158	21510358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-24.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	63.8	50.05	63.32	55.5	81.41	103.79	48.83	63.31	86.74	100.92	126.12	55.13
Merged-chr5-96912297-4	chr5	96912177	96912377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8995.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.44	9.56	4.56	10.46	9.82	2.82	6.31	3.9	45.83	28.62	46.73	26.0
Merged-chr4-145270323-3	chr4	145270197	145270397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 12 of 12)	intron (NM_009401, intron 12 of 12)	-23427.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	50.07	52.32	79.29	69.18	135.0	101.91	105.96	112.23	88.12	78.33	123.61	65.47
Merged-chr13-51996433-3	chr13	51996331	51996531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-100310.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	17.77	14.59	25.67	17.29	31.5	22.58	13.95	27.79	35.6	27.11	40.7	12.53
Merged-chr19-5877822-3	chr19	5877741	5877941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	19.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	90.45	55.84	79.86	65.96	85.5	84.04	36.87	66.06	60.97	69.29	65.32	47.93
Merged-chr13-20185299-3	chr13	20185189	20185389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94782.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	20.59	23.64	17.11	27.75	28.64	30.1	14.95	28.04	73.17	58.24	44.72	25.69
Merged-chr18-20696947-1	chr18	20696847	20697047	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-31687.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	14.94	10.31	7.99	20.11	18.0	13.8	13.29	16.23	17.11	12.55	15.07	20.68
Merged-chr14-52019837-3	chr14	52019691	52019891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	-78.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	86.41	72.44	79.29	65.16	87.96	100.66	61.45	94.85	141.03	196.83	235.16	95.55
Merged-chr11-69767703-3	chr11	69767591	69767791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1779.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	33.11	19.12	57.62	61.94	51.96	33.24	41.19	61.26	75.53	43.68	83.91	61.09
Merged-chr11-98918410-3	chr11	98918308	98918508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	10257.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	46.84	42.01	56.48	58.72	71.59	65.54	49.49	65.75	51.53	62.26	86.43	32.58
Merged-chr5-90655050-3	chr5	90654949	90655149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14522.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	67.43	53.32	83.29	56.71	51.96	56.44	49.49	72.39	66.68	60.25	71.86	46.36
Merged-chr11-35297590-3	chr11	35297501	35297701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176145.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	14.54	12.83	19.4	29.76	29.05	27.28	14.28	40.91	71.2	62.26	85.42	41.98
Merged-chr11-53980389-3	chr11	53980209	53980409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019723)	promoter-TSS (NM_019723)	24.0	NM_001362202	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	28.27	24.15	22.82	22.52	38.05	37.0	29.9	37.93	36.98	26.61	38.69	18.17
Merged-chr13-29986204-3	chr13	29986097	29986297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-134.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	242.68	259.07	302.91	308.08	312.96	359.98	275.04	340.54	447.07	477.0	628.61	259.07
Merged-chr5-125180125-3	chr5	125180021	125180221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-907.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	56.13	38.48	46.78	63.15	47.87	71.49	65.77	80.13	35.8	41.67	64.82	30.07
Merged-chr4-133599894-3	chr4	133599802	133600002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018754)	TTS (NM_018754)	2266.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	67.03	52.07	70.17	71.59	69.55	78.39	50.49	64.99	103.46	61.26	106.02	35.71
Merged-chr7-80831688-3	chr7	80831588	80831788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-28357.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	16.96	17.1	22.82	28.56	32.32	28.85	21.92	33.22	40.71	19.58	29.14	19.42
Merged-chr4-95303510-3	chr4	95303402	95303602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-251280.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	17.77	28.42	35.37	38.61	35.18	21.95	18.93	33.25	55.86	33.64	49.75	23.49
Merged-chr12-99641528-3	chr12	99641427	99641627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13553.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	33.92	26.66	26.24	34.99	43.36	27.91	17.27	36.11	42.48	64.77	63.82	36.03
Merged-chr2-132600272-3	chr2	132600169	132600369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	2073.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	51.28	33.7	22.25	45.05	69.14	59.27	23.92	33.36	62.15	33.14	54.77	34.77
Merged-chr10-94059809-3	chr10	94059702	94059902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	23801.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	38.36	41.0	32.52	28.56	54.0	33.55	34.55	38.92	58.02	34.65	55.78	35.71
Merged-chr4-46489236-3	chr4	46489107	46489307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053179)	promoter-TSS (NM_053179)	-122.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	110.64	102.87	98.12	89.29	108.82	139.85	104.3	116.13	158.33	144.61	164.81	76.12
Merged-chr11-75454647-3	chr11	75454532	75454732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	85.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	54.11	57.1	31.95	66.77	45.82	76.51	68.1	44.83	48.19	75.82	52.76	44.8
Merged-chr18-6531358-1	chr18	6531258	6531458	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-15250.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	7.27	4.78	6.85	7.24	18.41	14.11	23.92	33.76	2.95	2.01	6.03	2.51
Merged-chr5-77015975-3	chr5	77015892	77016092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027970)	promoter-TSS (NM_027970)	-31.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	26.25	9.31	19.97	22.93	41.32	50.49	19.27	43.46	46.03	59.75	68.34	34.15
Merged-chr8-26977655-2	chr8	26977557	26977757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101502, intron 1 of 1)	CpG	321.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	25.44	28.93	10.84	18.9	18.41	37.0	17.27	12.06	32.65	32.13	34.17	27.57
Merged-chr11-50229367-3	chr11	50229267	50229467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-2878.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	40.78	25.66	24.53	26.55	40.5	43.59	27.57	34.18	41.3	45.19	38.19	28.51
Merged-chr5-120613010-3	chr5	120612908	120613108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-122.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	236.22	234.17	259.56	237.3	306.42	367.19	181.7	217.32	305.85	337.92	307.02	155.07
Merged-chr5-125393274-3	chr5	125393168	125393368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3251.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	161.92	154.44	204.22	182.2	227.05	271.87	188.34	248.78	309.98	368.04	406.51	234.64
Merged-chr5-134232276-3	chr5	134232188	134232388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2663.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	21.4	26.16	20.54	3.22	31.5	89.37	23.25	29.92	48.58	45.19	29.65	13.16
Merged-chr5-76905512-3	chr5	76905413	76905613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	1.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	198.26	199.46	221.91	209.14	209.46	254.93	150.47	225.14	305.06	363.02	351.74	184.51
Merged-chr1-195241694-3	chr1	195241574	195241774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-64959.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	180.09	226.63	196.24	229.66	176.73	190.03	209.93	204.23	163.64	158.67	234.66	218.35
Merged-chr12-52302396-3	chr12	52302284	52302484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	178225.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	19.38	7.29	23.96	35.39	26.18	14.74	31.56	48.14	32.85	28.62	65.83	23.18
Merged-chr17-10856059-3	chr17	10855955	10856155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	15696.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	37.15	23.39	42.78	35.39	29.86	32.61	22.59	38.16	56.06	51.21	44.72	23.18
Merged-chr7-80427902-3	chr7	80427793	80427993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-22457.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	29.88	30.94	42.21	35.39	27.0	34.18	19.93	18.62	30.29	35.65	30.15	22.87
Merged-chr7-43533184-3	chr7	43533068	43533268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021293)	promoter-TSS (NM_021293)	3.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	71.07	76.46	105.53	94.92	77.73	88.11	91.01	113.86	86.74	82.85	128.64	83.64
Merged-chr15-42984238-3	chr15	42984144	42984344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186574.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	16.96	12.32	23.39	13.27	17.59	19.76	22.92	22.09	3.34	3.01	2.01	1.25
Merged-chr16-92864308-3	chr16	92864207	92864407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38233.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	86.41	56.59	83.86	73.6	118.23	111.0	82.05	93.2	131.39	161.68	191.45	72.99
Merged-chr19-34526891-2	chr19	34526818	34527018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	556.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	14.54	21.88	15.97	13.27	7.36	8.78	13.95	9.14	21.83	16.57	17.59	22.87
Merged-chr11-35834557-3	chr11	35834476	35834676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025936)	promoter-TSS (NM_025936)	-48.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	96.91	88.79	79.29	97.33	100.23	116.96	84.7	101.78	112.11	127.03	125.12	69.55
Merged-chr3-100994451-3	chr3	100994349	100994549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-24786.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	32.3	19.87	19.97	32.98	37.23	36.06	21.59	52.91	38.94	44.19	54.77	27.25
Merged-chr15-79456681-3	chr15	79456492	79456692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14449.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	12.52	5.28	10.27	18.1	15.96	10.35	21.59	14.58	23.21	17.07	16.58	9.08
Merged-chr12-69197149-3	chr12	69197041	69197241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033222)	promoter-TSS (NR_033222)	-70.0	NR_033222	414085.0	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	46.03	56.85	28.52	45.85	44.59	51.11	43.18	56.19	69.63	63.27	77.38	32.89
Merged-chr9-50856961-3	chr9	50856842	50857042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	18.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	31.09	36.47	25.1	32.98	44.18	56.13	34.88	47.83	53.11	63.27	71.86	36.65
Merged-chr4-155066133-3	chr4	155066029	155066229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-901.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	40.38	24.9	20.54	25.34	30.68	31.67	17.27	24.31	46.42	33.64	53.26	27.25
Merged-chr16-58523223-3	chr16	58523111	58523311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018784, exon 1 of 11)	5' UTR (NM_018784, exon 1 of 11)	215.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	24.63	17.86	23.39	45.05	31.91	43.9	26.24	36.81	31.86	47.7	42.71	26.31
Merged-chr1-75479473-3	chr1	75479358	75479558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	13.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	33.92	52.07	47.92	64.75	52.77	65.22	70.09	66.17	71.79	91.89	89.94	67.67
Merged-chr11-84819557-3	chr11	84819465	84819665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145433)	promoter-TSS (NM_145433)	-50.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	130.43	115.95	140.9	131.12	176.73	187.83	125.56	138.67	169.35	194.31	219.08	132.83
Merged-chr7-31033948-3	chr7	31033853	31034053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	6364.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	23.82	14.59	31.38	24.94	34.36	50.8	34.55	52.37	60.97	45.19	85.42	41.35
Merged-chr19-5843826-5	chr19	5843761	5843961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	1617.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	13.33	9.31	8.56	4.83	8.59	13.17	6.31	7.6	19.87	16.57	11.56	12.53
Merged-chr9-50768347-3	chr9	50768233	50768433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198675)	promoter-TSS (NM_198675)	95.0	NM_198675	382137.0	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	51.28	55.84	48.49	47.46	48.27	104.11	63.78	41.36	66.48	88.87	58.79	59.52
Merged-chr16-49982417-3	chr16	49982292	49982492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	1932.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	84.8	73.95	143.18	135.94	85.5	138.29	107.96	146.72	125.88	136.07	204.01	92.41
Merged-chr3-144570800-1	chr3	144570700	144570900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	373.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	34.73	31.19	33.66	36.2	29.86	29.79	43.85	26.19	36.39	39.16	40.7	31.33
Merged-chr3-90267893-3	chr3	90267769	90267969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356483, intron 2 of 27)	intron (NM_001356483, intron 2 of 27)	1355.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	25.04	29.68	48.49	37.81	35.18	34.49	36.87	51.84	41.11	33.64	35.17	35.09
Merged-chr2-117123210-1	chr2	117123110	117123310	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	2139.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	8.08	8.55	6.28	2.41	16.77	14.74	6.98	7.82	20.46	10.54	9.04	7.52
Merged-chr3-116008244-3	chr3	116008147	116008347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-50.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	75.51	95.58	50.77	42.23	89.18	184.69	65.11	48.14	108.38	129.54	77.38	28.82
Merged-chr1-195131120-3	chr1	195131032	195131232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355061, exon 1 of 9)	5' UTR (NM_001355061, exon 1 of 9)	438.0	NM_001355060	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	28.67	50.05	42.21	40.22	38.46	36.06	37.54	45.06	44.84	34.65	48.74	28.19
Merged-chr6-122669607-3	chr6	122669523	122669723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37866.0	NM_001289831	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	17.77	16.85	13.12	16.49	22.09	27.59	9.97	17.07	21.44	23.1	25.12	20.68
Merged-chr2-84967571-3	chr2	84967469	84967669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12892.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	22.21	35.97	61.04	57.51	24.14	23.83	27.24	39.06	46.62	26.61	34.67	31.64
Merged-chr7-120918704-3	chr7	120918584	120918784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	940.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	27.86	23.64	36.51	45.45	63.82	69.3	51.49	70.09	47.21	26.61	32.16	24.43
Merged-chr12-54398280-3	chr12	54398181	54398381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6963.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	16.15	13.58	13.69	24.94	27.82	29.48	33.22	53.44	30.68	28.62	55.27	24.75
Merged-chr5-64379153-3	chr5	64379044	64379244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88798.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	170.0	124.25	139.19	152.84	149.73	186.89	122.57	156.14	190.39	164.19	183.41	118.1
Merged-chr1-144200703-3	chr1	144200611	144200811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23339.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	83.18	91.81	87.28	103.37	120.69	137.34	89.69	134.94	127.65	111.97	144.21	77.06
Merged-chr1-161896270-3	chr1	161896168	161896368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19586.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	21.8	21.88	26.81	27.75	35.18	24.46	14.28	34.35	52.52	69.29	47.23	30.07
Merged-chr7-127244474-3	chr7	127244378	127244578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177362)	promoter-TSS (NM_177362)	-48.0	NM_177362	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	91.66	54.83	73.59	65.16	99.41	102.85	55.8	73.46	92.44	85.36	114.06	63.59
Merged-chr2-160048314-3	chr2	160048218	160048418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC2|LINE|L1	31665.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	18.98	15.59	21.11	25.34	32.73	22.89	14.95	18.42	15.34	25.11	25.63	18.48
Merged-chr14-70062220-3	chr14	70062110	70062310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15235.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	66.63	56.09	66.74	62.34	71.18	73.69	84.04	58.21	66.68	59.25	85.92	55.76
Merged-chr9-59486765-3	chr9	59486667	59486867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-393.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	191.0	210.78	233.89	163.29	177.96	233.93	135.19	152.05	202.39	220.93	242.7	116.54
Merged-chr1-156437519-3	chr1	156437429	156437629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 11 of 15)	intron (NM_009230, intron 11 of 15)	-16614.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	99.33	84.01	93.55	106.18	90.82	136.72	93.01	110.3	108.77	142.6	117.58	78.32
Merged-chr17-84365515-3	chr17	84365420	84365620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	100688.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	32.3	23.64	38.79	32.18	15.14	27.28	18.27	23.24	47.8	30.63	45.73	20.36
Merged-chr4-151996622-1	chr4	151996522	151996722	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-443.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	95.7	104.64	87.85	84.86	129.28	112.89	91.01	89.58	124.11	134.06	146.72	113.72
Merged-chr10-39731956-3	chr10	39731832	39732032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	75.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	85.2	80.49	53.62	65.56	65.87	95.64	64.77	71.13	140.63	127.03	145.22	74.87
Merged-chr15-101246443-3	chr15	101246346	101246546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-20400.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	279.43	260.33	266.97	247.76	287.19	308.87	197.97	230.1	281.46	294.23	327.62	164.78
Merged-chr17-5807999-3	chr17	5807888	5808088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8498.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	26.65	16.6	45.64	20.51	24.55	23.83	20.26	32.64	28.32	24.1	46.23	13.47
Merged-chr7-100493734-2	chr7	100493645	100493845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011671, intron 1 of 7)	intron (NM_011671, intron 1 of 7)	387.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	71.47	54.58	32.52	38.61	72.82	80.9	36.87	40.46	41.3	50.21	36.68	20.36
Merged-chr15-80264368-3	chr15	80264269	80264469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-63.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	54.51	44.02	53.62	31.77	55.23	52.05	33.55	59.69	57.83	57.24	77.38	39.16
Merged-chr3-108865311-3	chr3	108865198	108865398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24710.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	45.23	26.91	33.09	51.48	40.91	39.51	55.14	49.07	37.57	51.21	61.3	23.49
Merged-chr18-74216094-3	chr18	74215999	74216199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-113.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	195.03	210.03	174.56	201.9	263.46	263.71	192.99	252.73	289.52	337.42	325.61	144.73
Merged-chr8-25101884-3	chr8	25101814	25102014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031257)	promoter-TSS (NM_031257)	-103.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	30.69	39.74	24.53	20.51	29.05	38.57	33.55	15.34	30.09	39.16	32.66	12.22
Merged-chr2-84956535-3	chr2	84956452	84956652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021398, intron 12 of 12)	intron (NM_021398, intron 12 of 12)	19906.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	69.45	64.39	74.73	88.89	65.46	65.54	58.46	112.32	93.62	67.28	160.79	74.24
Merged-chrX-38456488-3	chrX	38456378	38456578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010685)	promoter-TSS (NM_010685)	-18.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	31.9	25.66	25.1	33.78	26.18	48.29	27.57	30.9	48.58	43.18	68.84	26.31
Merged-chr10-62340305-3	chr10	62340212	62340412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038038)	promoter-TSS (NR_038038)	109.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	121.54	123.5	150.03	139.56	155.46	159.61	126.56	138.67	222.06	249.04	299.98	129.69
Merged-chr3-81054266-3	chr3	81054171	81054371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	17855.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	56.13	34.71	49.63	63.55	49.5	55.82	38.53	84.39	63.73	51.21	87.43	37.91
Merged-chr2-25365216-2	chr2	25365113	25365313	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149315, intron 1 of 8)	CpG	450.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	5.25	12.32	14.26	4.42	33.14	28.22	31.89	34.09	27.34	28.62	35.17	20.05
Merged-chr12-105981567-2	chr12	105981469	105981669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-28694.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	7.27	17.1	29.66	14.48	1.64	0.63	0.0	0.36	23.21	35.65	24.12	14.41
Merged-chr14-46821520-3	chr14	46821413	46821613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022023, intron 1 of 6)	intron (NM_022023, intron 1 of 6)	729.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	18.17	19.12	22.82	26.14	28.64	41.39	17.94	45.11	37.17	30.13	44.22	17.54
Merged-chr11-4261293-3	chr11	4261194	4261394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3726.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	18.17	19.12	22.82	19.31	22.91	25.09	18.93	23.58	21.24	19.08	41.2	12.22
Merged-chr1-74392661-3	chr1	74392576	74392776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	1067.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	18.57	23.14	15.97	9.65	27.41	24.46	56.47	30.73	52.32	43.18	66.33	22.56
Merged-chr4-106316164-3	chr4	106316067	106316267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183225)	promoter-TSS (NM_183225)	-46.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	33.92	24.9	25.67	45.85	27.41	25.09	24.58	23.22	27.14	27.11	39.7	21.93
Merged-chr5-76929348-3	chr5	76929248	76929448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-21954.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	33.92	35.47	41.64	38.21	19.64	28.22	15.61	27.73	47.4	34.65	63.31	29.45
Merged-chr11-97745009-5	chr11	97744912	97745112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054051)	promoter-TSS (NM_054051)	115.0	NR_106180	102466256.0		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA	54.11	60.37	37.08	47.86	41.32	56.76	52.15	35.94	46.22	72.81	31.15	27.88
Merged-chr11-98938280-2	chr11	98938141	98938341	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 1 of 8)	intron (NM_009024, intron 1 of 8)	523.0	NM_001177302	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	13.33	8.8	7.42	6.84	15.55	14.42	8.97	6.28	12.78	16.07	14.57	10.96
Merged-chr6-34368162-3	chr6	34368082	34368282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008012, exon 10 of 10)	3' UTR (NM_008012, exon 10 of 10)	14036.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	67.84	60.87	86.71	106.58	114.55	75.88	54.48	105.31	97.56	70.8	90.45	67.35
Merged-chr2-24386503-3	chr2	24386400	24386600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	-116.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	19.79	20.37	23.39	17.7	31.91	27.91	20.26	17.36	26.16	18.08	21.61	15.98
Merged-chr6-95718826-3	chr6	95718776	95718976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011507)	promoter-TSS (NM_011507)	-30.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	28.67	21.38	34.8	37.0	35.18	32.93	38.2	35.78	43.07	53.22	71.35	36.03
Merged-chr12-110503576-3	chr12	110503468	110503668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	17829.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	70.26	51.56	62.75	44.64	94.91	103.79	58.13	89.92	77.69	55.73	87.43	44.8
Merged-chr9-106200105-3	chr9	106200012	106200212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	-879.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	44.01	21.38	36.51	37.4	31.5	33.24	24.25	27.45	51.34	57.74	55.27	27.25
Merged-chr3-108018008-3	chr3	108017912	108018112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-39.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	116.7	100.36	120.37	117.84	148.91	152.4	122.9	150.34	127.45	96.4	169.34	71.74
Merged-chr17-67353626-3	chr17	67353519	67353719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	CpG	840.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	15.34	16.6	17.68	9.65	18.41	28.22	14.62	13.32	28.91	26.61	20.6	24.12
Merged-chr2-165034807-3	chr2	165034685	165034885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144892)	promoter-TSS (NM_144892)	-6.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	36.75	48.04	34.8	47.46	32.73	43.59	29.9	27.93	65.89	52.72	50.25	39.47
Merged-chr19-29488260-3	chr19	29488170	29488370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33717.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	32.3	38.99	31.95	17.7	45.0	49.54	57.13	40.82	59.99	61.26	55.78	39.78
Merged-chr17-46556325-3	chr17	46556222	46556422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	-160.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	174.84	162.24	181.98	139.97	191.05	219.5	135.53	171.56	203.77	239.5	237.17	145.98
Merged-chr17-35916624-5	chr17	35916531	35916731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163818)	promoter-TSS (NM_001163818)	-191.0	NM_001361454	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	40.78	37.48	23.96	47.86	50.73	75.88	47.83	31.4	60.38	84.86	99.49	68.61
Merged-chr19-55876685-3	chr19	55876565	55876765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-18656.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	20.59	27.42	49.06	37.81	36.82	22.58	47.5	44.41	21.24	25.11	28.14	27.25
Merged-chr16-30155203-1	chr16	30155103	30155303	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89846.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.23	0.0	3.42	4.02	0.0	0.63	0.0	1.6	33.44	29.12	33.16	28.51
Merged-chr8-26015479-4	chr8	26015327	26015527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008033, exon 1 of 9)	exon (NM_008033, exon 1 of 9)	174.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	13.73	25.91	12.55	28.15	27.41	21.95	24.91	17.78	22.62	18.58	24.12	15.04
Merged-chr4-149702909-3	chr4	149702785	149702985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1256.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	59.76	68.92	94.13	77.62	72.41	81.22	54.81	64.63	135.71	103.43	138.18	92.1
Merged-chr17-26716351-3	chr17	26716263	26716463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029870, intron 1 of 8)	CpG	713.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	133.66	117.72	109.53	132.73	166.51	134.84	105.96	159.11	150.07	165.19	222.1	99.93
Merged-chr19-5512908-3	chr19	5512803	5513003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2386.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	64.2	48.04	43.35	41.83	54.0	77.77	35.21	38.52	70.02	48.7	77.38	34.77
Merged-chr3-154596710-3	chr3	154596619	154596819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357674)	promoter-TSS (NM_001357674)	8.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	58.15	58.86	57.05	65.56	67.09	65.54	47.83	73.35	46.62	65.27	63.31	38.85
Merged-chr4-43442256-3	chr4	43442173	43442373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	-4.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	147.79	148.15	137.48	120.66	147.28	175.6	92.01	125.72	169.35	205.36	209.03	97.74
Merged-chr12-26469291-3	chr12	26469212	26469412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020557)	promoter-TSS (NM_020557)	97.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	47.24	50.56	66.17	65.96	83.05	59.27	45.18	76.37	88.71	88.37	87.93	36.65
Merged-chr11-18970062-3	chr11	18969949	18970149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	48920.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	27.46	18.36	23.96	22.52	17.18	21.95	33.22	33.22	20.46	26.11	33.16	19.74
Merged-chr7-73541689-3	chr7	73541538	73541738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	108.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	10.9	18.86	18.25	22.52	16.77	19.44	10.96	12.53	35.6	14.06	42.71	20.05
Merged-chr18-36760227-3	chr18	36760106	36760306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026464)	promoter-TSS (NM_026464)	-16.0	NM_026464	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	34.73	24.65	18.25	23.33	43.77	54.88	24.58	36.36	36.58	60.75	74.37	30.39
Merged-chr15-98993216-3	chr15	98993115	98993315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7250.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	72.28	66.4	63.89	51.48	67.5	90.94	32.22	58.68	109.16	112.97	106.53	56.39
Merged-chr19-44360341-3	chr19	44360238	44360438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	27012.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	13.73	28.17	41.64	27.35	42.14	44.21	36.54	25.4	43.86	40.17	33.67	30.7
Merged-chr17-42938924-3	chr17	42938841	42939041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62517.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	31.09	32.7	36.51	45.45	45.41	48.6	27.9	54.53	54.68	59.75	54.27	40.1
Merged-chr8-22859312-3	chr8	22859228	22859428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-211.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	106.2	120.98	73.59	90.09	112.09	131.7	117.26	91.6	207.31	185.28	170.34	97.74
Merged-chr15-36938764-3	chr15	36938655	36938855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	68647.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	27.05	30.43	19.97	29.76	24.55	31.36	32.22	22.21	24.39	27.11	25.12	20.36
Merged-chr6-119902636-3	chr6	119902589	119902789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011236)	promoter-TSS (NM_011236)	-9.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	22.21	23.14	31.95	16.49	15.14	30.42	17.61	24.53	44.06	41.67	41.71	22.56
Merged-chr1-16665259-3	chr1	16665169	16665369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026392)	promoter-TSS (NM_026392)	78.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	33.92	36.72	49.06	41.02	38.46	38.26	50.16	53.44	40.91	31.63	54.77	31.01
Merged-chr16-18680246-1	chr16	18680146	18680346	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-50308.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	5.65	2.52	5.13	12.47	13.91	24.46	3.32	17.86	3.74	0.5	7.03	9.08
Merged-chr16-45742908-3	chr16	45742800	45743000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272070)	promoter-TSS (NM_001272070)	55.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	59.36	65.15	87.85	79.23	95.32	92.19	94.34	89.69	106.8	114.48	158.78	62.65
Merged-chr11-109470323-3	chr11	109470224	109470424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	2905.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	57.34	39.74	66.74	39.01	41.73	39.2	21.26	43.15	35.6	22.59	60.3	39.16
Merged-chr8-112011991-1	chr8	112011891	112012091	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	632.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	4.04	9.56	6.28	4.02	9.82	2.82	6.31	7.91	0.98	6.03	3.01	10.02
Merged-chr5-19896048-3	chr5	19895968	19896168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-11450.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	54.92	41.25	90.7	88.08	71.59	49.23	65.77	108.45	85.56	96.4	126.63	41.66
Merged-chr1-51476576-3	chr1	51476497	51476697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	1802.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	29.48	21.38	19.97	21.32	31.91	43.59	11.96	28.37	43.47	23.1	31.66	14.72
Merged-chr3-82357979-3	chr3	82357897	82358097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081230)	promoter-TSS (NM_001081230)	-75.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	30.28	26.16	17.11	26.55	146.05	164.63	112.94	171.79	64.71	77.83	79.39	49.18
Merged-chr15-59393994-3	chr15	59393878	59394078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	19780.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	31.09	26.66	54.76	46.66	47.46	54.56	39.86	60.98	26.55	46.19	58.29	22.24
Merged-chr7-5038380-3	chr7	5038267	5038467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	79.0	NM_001039532	654801.0	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	41.19	47.04	55.9	67.97	49.5	72.44	86.36	46.54	40.32	56.24	54.27	33.83
Merged-chr14-101653808-3	chr14	101653706	101653906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016723)	promoter-TSS (NM_016723)	-161.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	49.26	63.64	31.95	46.25	54.0	67.42	67.43	36.9	61.17	76.82	46.23	36.97
Merged-chr6-5362203-3	chr6	5362108	5362308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21178.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	104.58	101.37	94.13	148.01	95.73	76.83	104.3	148.82	86.94	84.35	113.56	55.13
Merged-chr11-3174437-2	chr11	3174343	3174543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B4A|SINE|B4	19020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	389.26	326.48	488.31	604.91	1075.53	1011.9	957.65	1408.66	0.39	0.0	1.0	0.63
Merged-chr8-125569957-3	chr8	125569872	125570072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357372)	promoter-TSS (NM_001357372)	-109.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	181.71	163.24	205.36	162.89	184.51	197.86	125.56	145.54	175.64	162.18	218.08	100.56
Merged-chr15-81856268-3	chr15	81856175	81856375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020507, intron 1 of 1)	CpG	2051.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	71.88	50.56	67.31	61.94	64.64	95.95	48.83	59.44	92.25	80.84	150.74	58.89
Merged-chr5-43880771-3	chr5	43880664	43880864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	11955.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	72.28	60.37	84.43	100.15	74.46	66.16	103.97	68.19	70.81	63.27	120.6	48.87
Merged-chr9-59353415-3	chr9	59353301	59353501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153195, intron 1 of 15)	CpG	107.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	84.39	86.27	62.18	68.78	81.0	95.95	53.48	62.89	92.05	73.31	86.43	38.53
Merged-chr1-134077829-3	chr1	134077731	134077931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1324.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	21.4	24.9	44.5	36.2	40.91	42.96	48.5	46.74	50.16	54.23	77.88	40.72
Merged-chr10-81136306-5	chr10	81136162	81136362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	-9.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	26.25	26.66	27.95	16.89	26.59	23.2	24.91	22.46	21.64	39.67	30.15	24.75
Merged-chr6-28424004-1	chr6	28423904	28424104	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007480, intron 1 of 5)	intron (NM_007480, intron 1 of 5)	400.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	8.48	5.53	18.25	9.65	19.23	14.42	11.29	9.84	16.72	14.06	22.11	14.1
Merged-chr9-21601289-3	chr9	21601189	21601389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7040.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	18.17	22.13	27.95	17.7	40.09	35.12	14.95	22.09	35.6	30.13	29.65	13.47
Merged-chr4-141993811-1	chr4	141993711	141993911	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10819.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	5.25	5.28	9.13	5.23	17.18	8.78	10.63	12.22	6.88	4.52	12.56	8.14
Merged-chr1-166003432-3	chr1	166003338	166003538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-804.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	51.28	45.78	42.21	67.97	79.78	66.79	48.16	79.49	97.16	100.42	142.2	50.75
Merged-chr15-83129758-3	chr15	83129653	83129853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-6952.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	29.48	28.17	41.07	21.32	25.36	45.47	16.61	33.56	39.73	33.14	35.68	21.3
Merged-chr16-57422274-3	chr16	57422202	57422402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	69025.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	58.15	35.72	52.48	63.95	47.05	59.89	54.14	80.83	61.76	49.21	73.36	46.05
Merged-chr4-141016592-3	chr4	141016492	141016692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008546)	TTS (NM_008546)	5955.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	30.28	16.85	22.82	34.19	39.27	35.43	34.55	38.66	19.67	31.63	20.1	24.12
Merged-chr4-132593089-3	chr4	132593010	132593210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29043.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	69.05	50.31	71.88	68.37	89.59	109.75	38.86	56.89	93.23	104.44	63.31	47.3
Merged-chr2-167753005-3	chr2	167752917	167753117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61840.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	33.52	30.18	29.66	6.44	69.14	76.2	45.84	28.96	58.22	70.29	50.75	28.19
Merged-chr9-32146437-3	chr9	32146348	32146548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	30312.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	52.49	50.05	80.43	65.96	39.68	36.37	41.85	72.17	57.04	28.62	44.72	33.83
Merged-chr2-103485161-3	chr2	103485056	103485256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-3.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	68.24	54.58	77.01	74.41	85.5	96.89	66.1	81.0	102.08	95.4	131.15	48.56
Merged-chr7-44553499-3	chr7	44553395	44553595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	470.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	42.8	52.32	35.94	46.66	44.18	70.87	42.19	45.53	73.56	51.21	82.41	30.07
Merged-chr1-167370080-3	chr1	167370006	167370206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20115.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	33.11	26.41	25.1	30.16	42.96	25.71	14.28	41.75	46.03	54.73	47.74	31.01
Merged-chr7-34912828-3	chr7	34912735	34912935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	428.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	22.61	11.32	18.25	8.04	21.27	26.97	17.27	23.41	35.6	29.12	39.19	17.23
Merged-chr16-35776882-3	chr16	35776796	35776996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	6510.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	67.84	51.31	79.86	90.09	89.59	86.55	125.56	122.78	74.94	59.75	97.98	60.15
Merged-chr14-20546575-3	chr14	20546482	20546682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310427)	promoter-TSS (NM_001310427)	-9.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	61.38	45.53	19.97	35.8	63.82	81.53	40.19	52.65	68.64	45.69	73.86	32.58
Merged-chr4-89354192-1	chr4	89354092	89354292	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-43160.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	6.46	4.53	15.4	3.62	10.64	12.54	5.31	16.77	15.54	9.54	8.04	3.45
Merged-chr13-110968269-3	chr13	110968171	110968371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64425.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	42.4	49.05	34.8	46.25	52.37	73.38	49.49	57.95	74.74	42.68	84.92	37.28
Merged-chr9-118617449-3	chr9	118617364	118617564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	RLTR11C_MM|LTR|ERVK	10755.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	91.26	69.92	83.29	107.79	147.28	180.3	128.22	151.57	176.63	148.62	193.46	95.23
Merged-chr12-38863607-3	chr12	38863500	38863700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	79889.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	30.69	23.64	35.94	53.09	39.27	50.49	39.86	67.09	47.21	51.72	39.19	26.0
Merged-chr3-58525902-3	chr3	58525817	58526017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030685)	promoter-TSS (NM_030685)	-33.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	256.01	296.05	338.28	339.46	278.6	363.12	312.24	361.04	332.21	401.18	452.74	249.67
Merged-chr18-67775299-3	chr18	67775201	67775401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045376)	TTS (NR_045376)	425.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	34.73	51.06	34.8	47.86	52.37	62.71	35.87	53.07	120.37	111.97	131.15	80.2
Merged-chr11-89028051-3	chr11	89027945	89028145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	28642.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	45.63	27.42	31.38	40.22	31.09	31.98	32.22	38.58	60.97	46.7	33.16	22.24
Merged-chr6-83649243-1	chr6	83649143	83649343	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6873.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.02	0.75	1.14	7.64	4.5	3.45	12.62	19.88	3.74	1.0	9.55	6.89
Merged-chr8-126551164-3	chr8	126551025	126551225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42311.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	82.78	84.51	88.99	61.94	112.5	135.15	104.63	124.04	127.06	160.67	114.06	99.62
Merged-chr17-47883254-2	chr17	47883161	47883361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028767, intron 3 of 16)	intron (NM_028767, intron 3 of 16)	41371.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	19.79	10.06	18.83	5.63	18.82	28.22	14.28	21.53	0.2	1.0	0.5	1.88
Merged-chr5-135479382-3	chr5	135479280	135479480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	65742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	87.62	66.65	66.17	73.6	81.0	107.87	72.75	88.65	63.14	106.45	106.53	85.84
Merged-chr2-118008178-3	chr2	118008069	118008269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	103033.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	126.39	103.13	129.49	133.13	158.32	116.02	102.97	181.54	151.06	121.51	177.38	111.52
Merged-chr2-167368604-3	chr2	167368500	167368700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19422.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	71.07	59.36	91.84	57.51	101.05	81.84	83.04	91.23	86.54	69.79	78.89	56.39
Merged-chr2-76673129-3	chr2	76673035	76673235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-37.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	109.02	73.19	118.08	101.35	83.05	104.73	67.1	113.5	133.55	125.53	142.71	82.39
Merged-chr12-59131367-3	chr12	59131232	59131432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-121.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	135.68	137.08	160.3	125.08	130.09	198.18	127.55	149.83	179.18	171.22	181.9	106.82
Merged-chr17-33358854-3	chr17	33358739	33358939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207541)	promoter-TSS (NM_207541)	39.0	NM_207541	224694.0	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	25.84	30.69	18.83	21.32	20.86	35.75	26.91	26.1	39.93	44.69	42.71	19.74
Merged-chr15-25622394-3	chr15	25622283	25622483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-167.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	248.74	276.18	260.13	240.11	275.33	400.43	221.23	290.13	395.74	372.56	447.21	208.32
Merged-chr2-166730365-3	chr2	166730272	166730472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16540.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	71.47	67.66	78.72	57.51	88.37	111.32	79.39	83.72	110.54	101.43	130.65	74.24
Merged-chr11-103028421-3	chr11	103028307	103028507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-136.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	128.41	119.48	149.46	124.28	141.14	192.85	126.56	112.07	164.43	198.33	177.88	125.31
Merged-chr7-96483063-3	chr7	96482965	96483165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-141101.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	31.9	30.43	62.75	48.26	53.18	21.32	71.42	83.47	33.63	29.62	37.69	21.3
Merged-chr4-127022301-3	chr4	127022185	127022385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023603, intron 1 of 9)	CpG	984.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	73.09	62.13	86.71	84.86	56.87	91.56	64.11	69.08	93.62	118.5	120.6	61.4
Merged-chr11-3157931-1	chr11	3157831	3158031	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 11 of 33)	exon (NM_030207, exon 11 of 33)	33910.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	79.14	70.18	92.98	76.02	171.01	167.13	146.82	155.89	0.98	5.02	0.5	2.19
Merged-chr6-134920325-3	chr6	134920174	134920374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	-127.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	56.13	59.11	67.88	59.53	71.59	86.23	38.86	63.67	90.28	87.37	121.1	51.69
Merged-chr2-154569228-3	chr2	154569129	154569329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291105, exon 1 of 7)	5' UTR (NM_001291105, exon 1 of 7)	197.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	24.63	24.15	21.68	29.76	26.18	29.48	24.58	29.1	45.24	56.24	57.28	39.16
Merged-chr13-37679009-3	chr13	37678898	37679098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147040.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	107.01	141.36	118.08	92.1	133.37	197.86	122.9	122.58	121.16	168.21	142.2	92.41
Merged-chr16-50736943-3	chr16	50736848	50737048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4175.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	44.01	27.67	31.95	33.38	37.64	48.92	22.26	33.53	45.24	56.24	67.33	31.01
Merged-chr5-136458676-3	chr5	136458580	136458780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-82877.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	37.15	15.59	54.76	41.02	44.59	35.12	40.52	51.87	31.47	51.21	36.18	35.4
Merged-chr5-43114130-1	chr5	43114030	43114230	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119333.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.65	3.02	3.99	6.03	1.23	4.08	10.63	14.86	4.72	1.0	6.03	3.76
Merged-chr15-12027981-3	chr15	12027887	12028087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31980.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	34.73	39.49	37.65	43.44	22.09	22.89	21.92	31.99	33.04	24.1	29.14	25.06
Merged-chrUn_JH584304-41387-1	chrUn_JH584304	41287	41487	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18302.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.51	29.12	14.07	28.82
Merged-chr19-9943188-5	chr19	9943040	9943240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37460.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	18.98	16.6	15.97	15.69	29.05	19.76	14.62	18.9	16.72	25.11	17.08	18.17
Merged-chr7-101027830-3	chr7	101027719	101027919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15766.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	29.88	30.43	57.05	29.36	36.41	59.58	29.56	46.43	42.88	37.66	36.68	25.37
Merged-chr18-82692368-3	chr18	82692259	82692459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177832, intron 1 of 29)	CpG	375.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	29.07	32.7	25.1	20.51	31.09	42.96	40.86	28.96	37.17	45.69	36.68	24.12
Merged-chr14-12284810-3	chr14	12284678	12284878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284384, intron 1 of 4)	intron (NM_001284384, intron 1 of 4)	575.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	21.0	31.94	18.83	45.05	33.14	26.97	34.88	31.85	21.24	37.66	46.23	27.88
Merged-chr19-7226761-3	chr19	7226648	7226848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9132.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	61.38	64.64	81.58	78.43	71.18	67.1	44.51	67.68	51.93	45.69	60.8	56.7
Merged-chr15-85089691-3	chr15	85089601	85089801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080470, exon 18 of 25)	exon (NM_080470, exon 18 of 25)	42256.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	21.4	17.86	37.08	25.74	37.23	25.71	16.61	26.92	23.21	27.62	31.15	22.56
Merged-chr16-37597567-3	chr16	37597481	37597681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027778, intron 3 of 12)	intron (NR_027778, intron 3 of 12)	17428.0	NM_013547	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	47.65	52.32	58.76	32.18	45.0	41.71	31.56	49.71	68.05	65.78	74.87	47.3
Merged-chr9-42126870-3	chr9	42126777	42126977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2580.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	16.96	11.57	23.96	19.31	15.96	18.19	10.96	20.36	22.42	34.14	35.17	18.17
Merged-chr15-75862285-3	chr15	75862161	75862361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-78.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	52.09	58.86	63.89	20.11	46.64	67.1	29.9	27.42	75.92	71.3	62.31	23.18
Merged-chr11-82870254-3	chr11	82870159	82870359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	485.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	76.72	68.92	79.29	41.83	84.28	101.28	58.46	60.17	106.6	90.38	104.52	43.23
Merged-chr15-98511484-3	chr15	98511392	98511592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8342.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	72.28	41.25	46.78	43.84	36.0	39.51	38.86	53.86	48.19	22.59	34.17	25.37
Merged-chr6-136497986-3	chr6	136497902	136498102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20849.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	40.38	46.53	29.66	41.83	39.27	58.95	27.9	43.96	72.97	63.77	65.83	34.15
Merged-chr11-80081130-3	chr11	80081042	80081242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	-151.0	NM_018776	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	130.43	127.02	132.35	124.28	134.6	145.18	79.39	139.21	148.3	119.5	151.25	73.62
Merged-chr2-124753867-3	chr2	124753762	124753962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100281.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	44.01	34.46	47.35	64.35	47.46	47.04	53.15	63.67	26.16	30.13	47.74	36.97
Merged-chr11-79278757-3	chr11	79278641	79278841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24046.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	77.53	47.29	68.45	57.11	88.78	95.95	64.11	63.34	83.79	62.76	78.89	47.62
Merged-chr12-80924400-3	chr12	80924306	80924506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033786)	promoter-TSS (NR_033786)	41.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	32.71	23.64	47.35	34.59	29.46	42.96	40.86	51.25	48.19	36.15	68.34	29.76
Merged-chr11-60931955-3	chr11	60931845	60932045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027800)	promoter-TSS (NR_027800)	-78.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	123.56	112.18	135.77	86.07	116.19	121.98	82.05	100.65	138.27	120.51	163.81	84.27
Merged-chr13-113627317-2	chr13	113627223	113627423	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8759.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.5	1.71	1.61	29.86	31.04	39.2	34.71	34.62	40.17	44.22	30.7
Merged-chr7-19667632-3	chr7	19667536	19667736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2606.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	28.67	21.88	38.79	32.98	43.77	32.93	20.26	42.56	35.01	32.64	41.2	25.37
Merged-chr4-44169319-3	chr4	44169214	44169414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1031.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	33.52	25.4	30.23	34.59	50.73	37.63	22.26	50.27	45.04	38.16	44.72	34.46
Merged-chr4-133159311-3	chr4	133159210	133159410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28677.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	58.15	32.45	74.16	42.23	57.27	78.71	49.83	64.85	70.61	73.31	94.97	56.39
Merged-chr7-80057571-3	chr7	80057463	80057663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	17694.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	34.73	41.25	43.35	32.58	49.5	45.78	25.91	41.64	24.59	18.58	19.6	13.47
Merged-chr18-34118168-3	chr18	34118055	34118255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102829.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	31.9	20.88	22.25	27.75	33.55	33.24	15.94	24.87	38.94	33.64	46.73	18.48
Merged-chr4-133011485-4	chr4	133011363	133011563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-43.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	33.52	18.86	29.09	17.29	30.27	50.8	19.27	27.9	48.78	42.68	50.25	37.28
Merged-chr16-97462992-3	chr16	97462896	97463096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-90.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	31.9	62.63	70.17	55.91	40.91	31.04	37.2	55.21	52.32	43.18	69.34	31.01
Merged-chr15-68068443-3	chr15	68068319	68068519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190437.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	37.15	24.65	29.09	35.39	58.91	68.05	41.52	81.65	57.24	30.13	68.34	40.1
Merged-chr7-41633533-3	chr7	41633429	41633629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-2.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	60.17	48.04	74.73	83.26	78.96	95.33	70.09	99.53	112.9	123.52	167.33	83.02
Merged-chr14-33324803-3	chr14	33324700	33324900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86224.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	41.59	37.23	31.38	59.93	38.46	26.65	33.55	55.93	24.19	21.59	24.12	19.74
Merged-chr8-125054057-3	chr8	125053957	125054157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-138.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	25.04	28.42	29.09	32.18	37.64	30.1	30.89	29.24	27.93	35.15	40.7	23.81
Merged-chr1-167337936-3	chr1	167337857	167338057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12034.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	50.07	65.4	104.96	82.45	72.41	84.66	70.09	102.62	92.84	60.25	90.45	76.75
Merged-chr6-145803065-3	chr6	145802953	145803153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5330.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	170.0	120.48	195.67	171.74	188.6	217.93	179.7	251.75	202.79	150.63	247.72	150.68
Merged-chr14-19417452-3	chr14	19417395	19417595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	185092.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	45.23	40.75	42.21	42.23	43.36	28.54	58.13	133.15	18.69	26.61	19.6	29.45
Merged-chr4-88407032-3	chr4	88406939	88407139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 41 of 43)	intron (NM_001081184, intron 41 of 43)	31887.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	38.76	29.93	66.74	52.69	69.14	59.58	53.15	72.0	61.76	54.73	104.01	36.97
Merged-chr12-55474016-3	chr12	55473931	55474131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18616.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	56.94	47.04	66.17	54.3	82.23	87.49	98.99	84.11	78.09	93.39	89.44	52.63
Merged-chr1-64376575-3	chr1	64376481	64376681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156223.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	27.05	25.4	58.19	32.58	48.68	57.38	73.41	65.13	57.83	60.75	77.38	41.66
Merged-chr3-52198647-3	chr3	52198550	52198750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69687.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	27.86	18.86	26.24	32.58	34.77	32.3	34.21	39.73	36.39	40.67	47.23	21.93
Merged-chr5-32197894-3	chr5	32197800	32198000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34808.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	52.09	38.74	37.65	46.66	64.23	60.52	29.56	47.3	47.21	57.74	98.99	50.12
Merged-chr13-113611422-2	chr13	113611326	113611526	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7138.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.23	6.29	5.13	2.82	20.05	33.24	20.59	7.99	42.88	37.66	30.65	5.95
Merged-chr2-144600029-3	chr2	144599910	144600110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	57.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	80.36	72.94	71.31	65.56	83.87	103.48	62.12	95.55	103.65	107.45	162.3	95.23
Merged-chr14-8214453-3	chr14	8214363	8214563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-39.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	31.5	26.66	23.96	18.9	28.23	26.97	29.23	23.97	34.81	23.6	31.15	13.47
Merged-chr16-44138320-3	chr16	44138253	44138453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	906.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	31.9	26.91	29.66	12.07	19.23	45.78	25.24	23.13	47.01	44.69	31.15	26.31
Merged-chr6-124913441-3	chr6	124913341	124913541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026988)	TTS (NM_026988)	-1736.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	40.78	32.45	51.34	72.8	49.09	50.8	55.8	99.31	53.7	48.7	58.79	48.56
Merged-chr18-5125519-3	chr18	5125425	5125625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40206.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	22.21	24.15	20.54	35.8	23.73	32.3	31.89	40.82	36.39	32.13	57.79	21.62
Merged-chr1-85793383-3	chr1	85793296	85793496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-45.0	NM_133781	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	114.27	100.61	127.21	97.33	97.78	96.89	83.37	115.35	131.98	99.92	134.67	90.53
Merged-chr3-59211902-3	chr3	59211767	59211967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-985.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	104.58	80.49	110.1	58.72	78.96	112.57	81.05	73.43	97.95	69.79	72.86	32.89
Merged-chr1-172314283-3	chr1	172314198	172314398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	1931.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	90.05	133.81	102.11	41.83	87.14	192.22	107.29	92.44	124.7	83.35	81.9	43.54
Merged-chr17-34263219-3	chr17	34263135	34263335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	8.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	114.27	139.6	152.31	84.46	55.23	63.03	35.21	37.15	114.28	82.35	89.44	63.91
Merged-chr9-40196178-3	chr9	40196083	40196283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	3867.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	23.82	15.59	23.96	32.98	18.41	23.2	23.92	22.93	39.34	41.17	49.75	23.81
Merged-chr4-117124891-3	chr4	117124822	117125022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024078, intron 1 of 6)	intron (NR_024078, intron 1 of 6)	803.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	49.67	53.58	60.47	61.94	63.0	92.19	66.43	69.73	66.28	49.21	69.85	46.68
Merged-chr12-51692071-3	chr12	51691969	51692169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052973)	promoter-TSS (NM_052973)	-155.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	144.16	149.91	179.12	166.91	146.46	206.96	208.27	199.29	206.13	212.39	286.92	125.93
Merged-chr12-104174951-3	chr12	104174844	104175044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21072.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	38.36	28.67	69.03	73.2	83.05	81.84	72.41	109.4	117.03	66.28	158.78	80.2
Merged-chr16-57301764-3	chr16	57301655	57301855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025599)	TTS (NM_025599)	-8904.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	24.63	13.33	20.54	23.33	23.32	16.31	25.58	28.93	38.35	20.08	40.7	22.24
Merged-chr3-146352369-3	chr3	146352290	146352490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26554.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	23.42	27.92	26.81	18.5	38.05	40.45	34.21	50.36	46.03	57.74	76.88	44.8
Merged-chr6-113650279-3	chr6	113650166	113650366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11799.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	35.94	21.88	33.09	21.32	49.91	31.36	37.54	42.9	39.73	26.11	43.72	21.62
Merged-chr12-100013064-3	chr12	100012958	100013158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48559.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	23.02	14.34	37.08	16.89	33.14	26.03	17.27	29.27	29.7	30.13	22.61	15.04
Merged-chr18-50125799-3	chr18	50125703	50125903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2398.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	20.59	23.39	31.38	54.3	23.73	24.77	17.94	27.64	29.31	34.14	40.7	28.51
Merged-chr7-67958236-3	chr7	67958140	67958340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	5983.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	71.88	88.29	81.58	72.8	83.05	98.78	66.43	112.57	52.32	55.23	86.93	46.05
Merged-chr11-46812614-3	chr11	46812510	46812710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	1811.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	82.37	71.69	75.3	45.85	72.82	98.78	79.72	77.94	80.45	69.29	79.39	25.37
Merged-chr4-154904657-3	chr4	154904556	154904756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-5613.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	44.42	27.17	35.37	44.64	69.55	55.19	34.88	59.41	45.63	57.24	75.37	29.45
Merged-chr3-57847636-3	chr3	57847512	57847712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019410, exon 1 of 3)	5' UTR (NM_019410, exon 1 of 3)	145.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	23.42	11.07	13.69	21.32	26.18	21.95	22.59	26.41	17.11	20.59	25.63	15.04
Merged-chr16-21694745-3	chr16	21694648	21694848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-83.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	58.55	78.48	64.46	70.79	91.23	123.55	127.55	89.61	102.67	98.41	127.63	56.39
Merged-chr8-72161099-3	chr8	72160985	72161185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-115.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	343.63	327.49	395.33	340.66	372.28	450.6	310.91	377.81	462.41	469.47	574.34	305.43
Merged-chr2-179976861-3	chr2	179976769	179976969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033782)	promoter-TSS (NR_033782)	16.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	69.05	72.19	27.95	46.66	54.0	96.58	50.82	46.21	90.48	86.36	86.93	37.28
Merged-chr6-100211381-3	chr6	100211280	100211480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75978.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	15.75	23.64	42.78	32.18	24.14	20.07	29.56	47.94	34.42	27.62	39.7	28.82
Merged-chr10-77291257-3	chr10	77291171	77291371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_004429, exon 11 of 11)	non-coding (NR_004429, exon 11 of 11)	31971.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	14.13	21.63	9.13	20.51	28.23	19.44	26.57	19.54	22.42	22.59	21.1	19.74
Merged-chrUn_JH584304-62482-1	chrUn_JH584304	62382	62582	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2793.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	22.62	18.58	26.63	37.59
Merged-chr19-6077178-3	chr19	6077133	6077333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-46.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	28.27	17.61	15.97	23.73	22.5	37.63	12.29	24.64	45.24	38.66	38.69	23.49
Merged-chr6-86849386-3	chr6	86849280	86849480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	60.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	25.04	46.78	41.07	35.39	35.59	53.62	39.2	30.2	26.95	41.67	48.24	28.82
Merged-chr18-34331101-3	chr18	34330999	34331199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-46.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	101.35	121.74	103.82	99.34	146.05	178.74	90.68	118.43	150.07	179.75	170.34	85.84
Merged-chr14-64187548-3	chr14	64187448	64187648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	83225.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	19.79	15.59	29.66	14.88	17.18	23.52	16.94	28.68	16.92	20.59	24.62	13.78
Merged-chr11-61956765-3	chr11	61956686	61956886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281818)	promoter-TSS (NM_001281818)	23.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	27.05	16.35	18.25	22.93	25.36	29.48	14.95	21.76	44.45	30.13	42.71	31.95
Merged-chr9-110464183-3	chr9	110464083	110464283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	12511.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	34.32	28.93	45.07	38.61	43.77	34.81	33.88	52.71	33.83	21.09	25.63	20.36
Merged-chr3-148804062-3	chr3	148803982	148804182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	150553.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	77.93	54.08	87.85	100.55	101.87	63.03	80.05	127.51	120.77	65.27	146.72	98.68
Merged-chr10-61135376-3	chr10	61135273	61135473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	12311.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	20.59	18.86	25.67	18.1	22.09	26.65	14.95	26.13	33.24	25.11	31.15	18.48
Merged-chr6-114364837-3	chr6	114364738	114364938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-33098.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	21.4	21.88	41.64	44.64	31.91	24.46	31.89	50.8	34.42	33.64	35.17	28.51
Merged-chr11-60537311-1	chr11	60537211	60537411	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-372.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	32.71	31.19	15.97	17.7	25.36	47.04	17.94	16.46	31.27	48.2	29.65	24.43
Merged-chr10-96617893-2	chr10	96617805	96618005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007569, intron 1 of 1)	intron (NM_007569, intron 1 of 1)	904.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	23.42	27.67	14.83	22.93	19.23	25.09	18.27	12.17	35.4	31.13	24.12	12.22
Merged-chr16-56717526-3	chr16	56717421	56717621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	-71.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	316.98	318.18	342.27	347.9	346.1	401.69	289.65	382.82	366.23	381.6	451.73	214.9
Merged-chr14-121409185-1	chr14	121409085	121409285	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29955.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.42	6.04	3.99	2.82	6.95	8.47	4.32	13.6	6.88	5.02	14.07	4.07
Merged-chr15-79328311-3	chr15	79328203	79328403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	68.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	251.16	207.76	224.19	254.59	225.42	291.31	142.17	177.42	267.89	255.57	270.84	146.61
Merged-chr19-40702684-3	chr19	40702563	40702763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	42893.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	33.52	20.37	28.52	14.48	23.32	35.75	23.25	28.51	18.69	20.08	19.6	15.98
Merged-chr6-124930918-3	chr6	124930799	124930999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-489.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	69.05	46.53	81.0	99.34	87.55	85.92	46.5	80.64	84.77	103.43	116.07	51.38
Merged-chrX-150478177-3	chrX	150478054	150478254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19004.0	NR_152724	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	22.21	23.64	23.96	23.73	33.55	46.1	51.15	37.32	33.63	56.74	42.21	50.12
Merged-chr1-180835389-3	chr1	180835299	180835499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15752.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	34.32	38.48	70.17	31.77	51.96	60.21	44.51	69.11	72.77	55.73	74.87	34.15
Merged-chr12-112678779-3	chr12	112678664	112678864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100460)	promoter-TSS (NM_001100460)	-76.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	30.69	13.58	23.96	18.1	27.82	32.93	18.93	25.21	31.86	31.63	29.65	12.84
Merged-chr9-57655897-3	chr9	57655794	57655994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2263.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	14.54	20.63	15.4	26.55	24.96	26.65	11.63	19.71	28.13	18.58	27.13	20.36
Merged-chr1-16747456-3	chr1	16747356	16747556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59000.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	49.26	38.99	59.33	57.51	39.68	38.88	47.5	64.43	31.08	17.07	47.23	27.57
Merged-chr14-70781317-3	chr14	70781212	70781412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6931.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	98.93	74.7	116.94	114.63	114.96	110.69	94.67	106.99	144.96	128.54	160.29	83.96
Merged-chrX-166479767-3	chrX	166479681	166479881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019773)	promoter-TSS (NM_019773)	86.0	NM_019773	56382.0	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	64.2	51.81	39.93	64.75	67.5	114.77	55.8	75.98	118.8	90.38	147.73	53.57
Merged-chr19-45006554-3	chr19	45006461	45006661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	3.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	143.75	131.55	146.61	146.0	156.28	207.27	154.46	147.53	157.94	198.83	189.44	104.0
Merged-chr18-44827869-1	chr18	44827769	44827969	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-796.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	2.02	4.02	0.57	3.62	4.5	0.0	3.65	1.68	32.26	34.14	24.62	14.72
Merged-chr13-45266883-3	chr13	45266776	45266976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122866.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	34.32	27.17	51.91	37.81	49.09	42.65	25.91	48.42	51.73	26.61	34.17	36.34
Merged-chr9-106438374-3	chr9	106438272	106438472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276442)	promoter-TSS (NM_001276442)	-136.0	NM_025371	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	145.37	104.13	107.25	100.95	129.69	158.04	86.03	112.71	143.39	143.6	161.8	55.13
Merged-chr9-25482570-3	chr9	25482518	25482718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1021.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	24.63	31.19	38.79	29.36	70.37	36.37	53.48	78.0	51.93	36.15	83.91	29.76
Merged-chr4-105496371-1	chr4	105496271	105496471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	339024.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.23	2.52	4.56	8.04	5.32	1.88	8.64	14.24	8.85	4.02	22.11	5.33
Merged-chr1-35813827-3	chr1	35813697	35813897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-254603.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	92.07	79.99	98.12	138.36	55.23	102.54	54.48	96.45	91.46	82.35	91.45	52.32
Merged-chrX-167167476-3	chrX	167167368	167167568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41750.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	29.07	32.7	49.06	40.62	38.86	35.12	38.86	41.36	33.63	40.67	55.27	39.47
Merged-chr10-67285388-3	chr10	67285273	67285473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001036293)	promoter-TSS (NM_001036293)	-92.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	132.44	112.43	102.68	75.21	136.64	162.74	104.97	111.08	198.65	173.73	154.26	96.49
Merged-chr12-98266325-3	chr12	98266233	98266433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2302.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	89.24	75.46	87.28	82.05	76.91	79.02	62.45	66.9	81.23	75.32	71.35	37.28
Merged-chr14-8080307-3	chr14	8080215	8080415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348727)	promoter-TSS (NM_001348727)	2.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	56.94	46.28	46.78	58.32	72.82	74.32	48.5	61.68	72.38	78.83	79.39	52.0
Merged-chr1-135729279-4	chr1	135729219	135729419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	CpG	152.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	39.57	72.44	42.78	41.02	21.27	31.04	36.87	36.42	75.13	57.74	77.38	26.63
Merged-chr1-179518011-3	chr1	179517921	179518121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027188)	promoter-TSS (NM_027188)	20.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	39.17	31.19	37.08	35.8	42.14	45.78	36.54	43.54	49.57	51.72	47.23	43.23
Merged-chr5-65091712-3	chr5	65091613	65091813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15855.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	60.97	49.55	61.04	74.81	51.55	75.57	48.16	65.38	73.76	69.79	77.88	64.53
Merged-chr18-39369545-3	chr18	39369443	39369643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 21 of 21)	intron (NM_001361073, intron 21 of 21)	117702.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	69.45	55.59	74.73	94.11	57.68	72.75	58.13	85.01	78.09	60.25	93.46	51.06
Merged-chr5-145116535-3	chr5	145116430	145116630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2274.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	102.16	98.6	139.76	113.02	130.09	163.37	91.01	127.35	167.77	137.58	198.98	100.87
Merged-chr18-39636273-3	chr18	39636178	39636378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137219.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	23.42	17.1	30.8	20.11	36.82	60.21	26.24	32.19	36.98	31.63	33.16	16.92
Merged-chr11-31736269-3	chr11	31736176	31736376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64414.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	128.41	119.73	152.88	131.52	143.6	192.22	123.9	162.65	170.73	155.65	170.84	104.94
Merged-chr13-24444899-3	chr13	24444806	24445006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	29784.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	48.05	59.36	46.21	67.97	55.23	43.59	53.81	60.0	58.61	73.31	73.36	48.24
Merged-chr4-150545001-3	chr4	150544887	150545087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	107187.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	89.64	67.66	79.29	78.43	75.28	88.11	57.47	81.2	49.37	56.74	57.79	43.86
Merged-chr1-39535688-3	chr1	39535582	39535782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-19.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	114.68	139.6	124.36	129.11	127.64	178.42	68.76	117.51	145.55	172.72	143.21	78.94
Merged-chr5-115158829-3	chr5	115158760	115158960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-684.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	26.65	18.61	12.55	31.77	41.32	37.32	21.26	36.62	42.68	48.7	45.73	36.03
Merged-chr10-127266292-3	chr10	127266191	127266391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	29.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	95.3	83.26	104.39	90.09	121.91	124.17	66.1	99.84	153.22	123.52	167.33	71.42
Merged-chr10-30719100-3	chr10	30718995	30719195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-63228.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	26.65	22.64	18.83	28.56	23.32	34.81	12.95	24.9	37.96	31.63	42.71	29.45
Merged-chr9-90060496-3	chr9	90060396	90060596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007801, exon 2 of 12)	exon (NM_007801, exon 2 of 12)	6229.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	106.6	68.92	90.13	86.88	61.77	109.44	45.51	62.16	103.06	97.41	71.35	50.44
Merged-chr4-102624319-3	chr4	102624251	102624451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34508.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	157.08	141.86	86.71	71.59	113.73	205.39	87.03	74.27	178.2	212.39	168.33	86.46
Merged-chr2-165055614-3	chr2	165055526	165055726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-10.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	47.65	46.53	30.23	22.52	33.96	74.0	24.25	23.86	51.14	64.77	74.87	20.99
Merged-chr11-118290291-3	chr11	118290211	118290411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-67.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	241.47	245.24	202.51	211.15	278.6	323.92	195.98	174.39	336.53	306.28	287.42	174.8
Merged-chr1-165697745-3	chr1	165697642	165697842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	10352.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	23.82	26.66	43.93	47.46	46.23	42.02	40.52	57.14	40.71	47.7	74.37	30.39
Merged-chr6-28262470-3	chr6	28262361	28262561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-860.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	35.53	38.23	21.68	18.5	21.68	62.4	16.28	11.97	47.21	57.24	45.73	14.1
Merged-chr11-6528813-3	chr11	6528719	6528919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045893)	promoter-TSS (NR_045893)	-59.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	138.1	144.38	128.35	137.15	132.55	187.2	82.71	127.79	174.66	186.78	203.51	106.51
Merged-chr19-4066489-5	chr19	4066422	4066622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7075.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	22.61	20.12	15.97	12.87	24.55	30.42	18.6	20.19	18.88	29.12	34.67	15.04
Merged-chr1-72583205-3	chr1	72583110	72583310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018817)	promoter-TSS (NM_018817)	-41.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	141.33	144.13	162.01	170.13	198.01	219.19	137.85	231.0	177.41	218.42	243.7	114.03
Merged-chr16-32972705-3	chr16	32972621	32972821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081255, intron 6 of 20)	intron (NM_001081255, intron 6 of 20)	58621.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	41.99	45.02	58.76	45.85	60.14	52.68	30.56	70.32	41.3	23.6	45.73	35.71
Merged-chr1-71557103-3	chr1	71556999	71557199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026195)	promoter-TSS (NM_026195)	-57.0	NM_026195	108147.0	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	149.81	131.55	177.41	154.04	183.28	211.66	192.33	256.12	198.65	208.37	306.51	145.98
Merged-chr2-126933184-3	chr2	126933072	126933272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	63.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	131.64	111.43	150.6	132.32	141.96	161.49	136.19	141.28	118.01	117.49	144.21	83.33
Merged-chr1-84839649-4	chr1	84839601	84839801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-140.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	37.15	30.43	29.66	32.58	40.91	47.66	42.19	33.64	49.17	51.72	33.16	41.04
Merged-chr10-77531926-3	chr10	77531806	77532006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	1558.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	63.8	45.02	51.91	35.39	75.68	110.06	83.04	82.35	83.59	95.9	92.46	55.76
Merged-chr3-32510551-3	chr3	32510456	32510656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144519)	promoter-TSS (NM_144519)	6.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	149.4	146.89	152.88	145.6	172.64	218.56	213.25	207.9	253.73	222.93	320.08	150.37
Merged-chr9-54863712-3	chr9	54863639	54863839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	-16.0	NM_022655	64602.0	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	144.56	126.27	118.65	125.08	144.82	179.05	94.34	92.52	163.45	143.6	122.61	63.28
Merged-chr4-19895864-3	chr4	19895782	19895982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	26684.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	40.78	27.17	42.21	55.5	60.96	46.1	36.87	67.71	54.88	60.75	84.42	39.47
Merged-chr15-80948452-3	chr15	80948340	80948540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-50.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	21.8	19.87	27.38	17.7	18.82	24.46	17.27	22.51	18.88	24.1	29.14	15.35
Merged-chr5-30916258-3	chr5	30916144	30916344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133918, intron 3 of 7)	intron (NM_133918, intron 3 of 7)	2458.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	160.71	161.48	173.99	187.02	189.01	204.14	162.43	203.05	171.51	167.2	235.16	146.92
Merged-chr2-181693844-3	chr2	181693684	181693884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291208)	promoter-TSS (NM_001291208)	26.0	NM_001291206	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	69.05	88.03	51.34	76.02	66.27	81.84	92.01	67.15	70.81	73.81	83.41	42.29
Merged-chr7-131362823-3	chr7	131362719	131362919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026655)	promoter-TSS (NM_026655)	-93.0	NR_152380	68277.0	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	47.24	28.67	31.95	43.44	58.5	42.02	34.21	57.36	55.47	61.26	77.38	30.7
Merged-chr7-63925493-3	chr7	63925426	63925626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8669.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	48.46	35.21	37.65	41.83	84.68	30.1	34.88	56.61	57.63	41.17	86.43	36.03
Merged-chr6-83317199-3	chr6	83317101	83317301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008638, intron 1 of 7)	intron (NM_008638, intron 1 of 7)	403.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	27.05	18.61	25.67	11.66	21.68	26.65	13.95	21.0	34.03	36.65	40.2	20.05
Merged-chr2-137116931-3	chr2	137116851	137117051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-431.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	23.82	16.35	12.55	27.35	28.64	31.04	54.48	48.62	12.98	18.58	20.6	11.28
Merged-chr7-44548905-3	chr7	44548798	44548998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-83.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	183.73	180.35	205.36	182.6	229.92	257.76	144.49	190.26	261.2	264.11	318.57	151.62
Merged-chr14-44048471-3	chr14	44048378	44048578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42060.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	45.23	39.49	50.77	73.6	58.5	39.51	36.21	25.77	41.5	32.13	45.22	29.76
Merged-chr19-47537116-3	chr19	47537036	47537236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-17.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	56.53	62.63	63.32	73.2	72.41	102.85	48.16	63.08	86.35	92.89	96.48	23.81
Merged-chr7-109960487-3	chr7	109960386	109960586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021494)	promoter-TSS (NM_021494)	-16.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	49.67	63.39	51.91	53.89	51.55	63.03	43.51	45.08	65.1	74.81	75.37	33.83
Merged-chr6-29513455-3	chr6	29513361	29513561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5509.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	33.11	29.93	46.21	41.43	60.96	37.0	37.87	48.06	43.66	39.67	78.39	34.77
Merged-chr9-77959943-3	chr9	77959817	77960017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 2 of 7)	intron (NM_134255, intron 2 of 7)	42552.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	42.8	31.44	70.74	92.91	66.27	56.13	63.44	89.97	37.96	35.15	54.77	30.39
Merged-chr4-132884487-3	chr4	132884382	132884582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-24.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	38.76	25.66	38.79	32.58	41.32	21.64	22.92	28.65	32.85	31.13	36.18	37.59
Merged-chr3-83839603-3	chr3	83839500	83839700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011905, intron 2 of 2)	intron (NM_011905, intron 2 of 2)	2008.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	102.56	79.73	167.14	112.62	130.09	142.99	133.86	164.78	122.73	112.97	141.7	96.17
Merged-chr17-15498270-3	chr17	15498177	15498377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011185)	promoter-TSS (NM_011185)	-1.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	52.9	30.94	47.35	39.01	42.96	58.01	41.52	49.37	58.81	66.28	79.89	39.78
Merged-chr10-81221573-3	chr10	81221475	81221675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	9204.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	17.36	14.34	29.09	19.31	39.27	30.1	10.96	33.2	37.76	25.11	56.28	20.05
Merged-chr5-114823367-2	chr5	114823279	114823479	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	89.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	8.08	19.37	6.28	4.83	9.82	18.81	13.95	10.29	15.14	19.08	27.13	11.9
Merged-chr17-71256984-1	chr17	71256884	71257084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52330.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	22.61	9.31	25.67	8.85	38.86	53.31	23.25	34.65	3.15	1.0	1.0	2.19
Merged-chr13-68582144-3	chr13	68582090	68582290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	-20.0	NR_138477	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	97.72	67.41	74.16	69.98	129.69	110.69	84.04	117.31	134.14	140.09	170.34	82.08
Merged-chr7-141228679-3	chr7	141228631	141228831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-57.0	NM_001081118	101471.0	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	39.17	37.98	45.64	31.37	34.36	57.07	31.89	37.65	49.96	78.83	67.33	39.47
Merged-chr9-45272394-3	chr9	45272284	45272484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3235.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	52.9	60.62	46.21	24.94	47.46	74.0	37.54	28.82	35.99	34.65	32.66	13.78
Merged-chr19-10689145-3	chr19	10689080	10689280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	CpG	445.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	52.09	44.77	62.18	42.63	48.68	88.74	29.23	35.5	53.3	77.32	56.78	42.29
Merged-chr17-87327156-3	chr17	87327052	87327252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	44266.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	55.72	58.86	42.78	57.11	76.5	82.78	56.47	82.37	80.84	51.21	76.38	41.98
Merged-chr9-78443229-3	chr9	78443141	78443341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173386)	promoter-TSS (NM_173386)	-4.0	NM_173386	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	77.12	72.69	71.31	66.36	63.0	95.95	58.13	81.36	90.67	111.97	107.03	52.94
Merged-chr1-16059930-3	chr1	16059844	16060044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33381.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	18.17	18.11	34.8	49.87	40.5	32.93	31.22	36.98	42.09	30.63	76.38	32.89
Merged-chr2-91196955-3	chr2	91196858	91197058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1842.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	161.52	138.84	147.75	110.6	144.82	243.65	158.78	138.87	220.29	205.36	234.66	135.02
Merged-chr7-106529225-3	chr7	106529111	106529311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88138.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	30.28	37.98	46.78	45.45	32.73	50.8	22.92	26.8	42.48	30.13	77.88	17.54
Merged-chr11-83578534-3	chr11	83578454	83578654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011338)	promoter-TSS (NM_011338)	82.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	31.5	31.19	28.52	42.63	50.73	40.45	59.46	53.19	36.98	49.71	37.69	32.27
Merged-chr10-82814262-3	chr10	82814164	82814364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2141.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	21.0	12.32	31.95	22.93	15.14	37.0	31.22	51.53	59.79	29.62	66.33	46.68
Merged-chr19-21106457-3	chr19	21106353	21106553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126458)	TTS (NR_126458)	1743.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	74.7	66.4	50.2	38.21	119.87	208.21	112.27	93.31	143.58	204.36	148.23	67.35
Merged-chr11-70683731-3	chr11	70683617	70683817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178116, intron 5 of 22)	intron (NM_178116, intron 5 of 22)	4388.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	44.82	45.53	36.51	19.71	40.5	72.12	34.21	22.04	68.64	53.73	56.78	16.29
Merged-chr5-122762363-3	chr5	122762281	122762481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 2 of 16)	PB1D9|SINE|Alu	17029.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	54.92	47.29	49.06	42.23	63.0	71.81	41.19	62.22	40.12	44.19	57.28	44.48
Merged-chr6-103649160-3	chr6	103649040	103649240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007697, intron 4 of 26)	SYNREP_MM|Satellite|Satellite	138264.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	585.1	664.79	544.79	602.5	403.38	231.42	487.29	52.57	475.0	442.36	316.56	736.18
Merged-chr6-125426598-3	chr6	125426511	125426711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46107.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	45.63	39.74	31.38	34.59	44.59	47.66	32.55	45.62	63.33	51.72	60.3	37.28
Merged-chr4-16088560-3	chr4	16088470	16088670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74682.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	100.95	74.7	104.39	84.06	124.37	101.91	99.98	118.26	126.47	114.98	145.22	89.59
Merged-chrUn_JH584304-20280-1	chrUn_JH584304	20180	20380	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39409.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.69	25.61	39.7	18.48
Merged-chr7-88202169-3	chr7	88202071	88202271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75914.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	26.65	33.7	49.63	51.88	39.27	43.9	49.16	61.12	40.91	34.14	78.39	28.51
Merged-chr2-39226387-3	chr2	39226273	39226473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-24.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	108.22	104.38	134.63	140.37	104.32	163.06	101.98	137.19	170.14	183.27	243.7	121.55
Merged-chr2-13271448-3	chr2	13271360	13271560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-45.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	213.61	198.71	219.06	271.89	262.64	265.6	229.2	241.18	328.47	355.49	445.7	192.03
Merged-chr2-165405235-3	chr2	165405138	165405338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_054055)	TTS (NM_054055)	-4844.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	62.99	46.78	98.69	93.31	83.87	78.39	68.43	83.1	88.12	61.76	104.52	53.57
Merged-chr1-155091513-3	chr1	155091412	155091612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8124.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	121.54	79.99	102.68	93.71	125.19	111.32	86.03	116.58	103.06	124.52	136.17	85.84
Merged-chr8-115707443-3	chr8	115707364	115707564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-570.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	27.86	30.94	32.52	34.99	19.64	24.77	35.87	27.22	27.54	31.13	44.72	30.7
Merged-chr2-27716531-3	chr2	27716420	27716620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	5937.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	45.23	43.77	87.28	72.4	54.82	24.77	82.38	70.4	34.03	31.13	57.79	29.76
Merged-chr5-74195188-3	chr5	74195099	74195299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-127.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	36.75	18.36	30.23	22.12	84.28	67.1	63.78	93.17	36.78	31.13	70.85	25.37
Merged-chr1-171129486-3	chr1	171129388	171129588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025321, exon 6 of 6)	3' UTR (NM_025321, exon 6 of 6)	7827.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	70.26	47.04	56.48	99.75	130.09	102.85	128.22	161.55	88.12	64.77	145.22	77.38
Merged-chr12-106010204-3	chr12	106010112	106010312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-51.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	175.25	162.99	184.83	231.67	243.83	241.45	176.38	235.54	200.62	212.89	274.86	119.98
Merged-chr4-129035270-3	chr4	129035185	129035385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-22986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	33.52	25.15	54.76	24.94	49.91	63.03	23.25	28.93	52.91	50.71	52.26	25.06
Merged-chr2-101678420-3	chr2	101678318	101678518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009424)	promoter-TSS (NM_009424)	-2.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	50.07	55.59	53.62	76.42	65.87	56.13	63.44	69.08	80.84	70.8	110.55	49.5
Merged-chr12-84767688-3	chr12	84767599	84767799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	5413.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	48.86	58.86	50.2	56.31	103.5	89.68	59.13	72.7	83.4	94.4	101.0	66.1
Merged-chr13-44730623-3	chr13	44730528	44730728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205044)	promoter-TSS (NM_001205044)	-146.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	174.44	157.71	197.95	147.61	176.32	228.59	112.61	164.3	214.78	189.8	290.43	112.46
Merged-chr2-154574374-1	chr2	154574274	154574474	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4482.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0.0	1.76	0.0	0.0	0.82	0.0	0.0	0.48	31.27	36.15	23.11	9.71
Merged-chr5-122391837-3	chr5	122391755	122391955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-23.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	35.94	32.45	42.21	35.39	34.77	58.32	23.58	33.64	56.45	71.3	76.88	41.66
Merged-chr1-177796684-3	chr1	177796553	177796753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-144.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	409.45	393.39	432.98	390.13	464.74	493.88	395.95	478.12	427.8	545.79	690.91	328.3
Merged-chr2-69647184-3	chr2	69647082	69647282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028284)	promoter-TSS (NM_028284)	-73.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	35.53	41.0	37.65	46.66	54.82	43.59	66.1	78.56	81.82	66.78	78.89	40.72
Merged-chr9-13246863-3	chr9	13246769	13246969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025534)	promoter-TSS (NM_025534)	-87.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	52.49	45.78	59.33	44.24	85.91	101.28	67.76	69.5	116.83	113.98	149.24	64.85
Merged-chr7-75700905-3	chr7	75700818	75701018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-147420.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	21.4	12.83	25.67	28.15	11.86	14.42	11.63	24.45	16.33	21.59	22.11	16.29
Merged-chr6-106750506-3	chr6	106750413	106750613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1476.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	60.57	51.81	53.62	53.89	49.09	41.39	40.52	66.31	51.93	42.68	77.38	32.27
Merged-chr3-88950244-5	chr3	88950215	88950415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-33.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	22.21	22.39	28.52	23.73	25.36	30.73	25.24	15.9	30.09	28.62	31.15	29.13
Merged-chr6-28482399-3	chr6	28482292	28482492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	47.24	46.03	34.23	20.11	20.46	61.77	19.93	18.64	64.71	69.29	65.32	29.76
Merged-chr3-109129923-3	chr3	109129859	109130059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172685, intron 1 of 9)	Lx8|LINE|L1	6810.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	48.46	22.64	55.9	64.75	40.09	52.05	53.81	69.7	49.17	52.22	59.8	41.66
Merged-chr19-9954662-3	chr19	9954538	9954738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25962.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	46.84	38.74	53.05	47.46	51.55	68.99	55.47	80.89	75.13	68.29	61.81	37.28
Merged-chr3-110250852-5	chr3	110250708	110250908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	191.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	17.36	21.88	13.12	21.32	12.27	14.74	33.88	20.58	15.93	19.08	21.61	16.29
Merged-chr6-65585612-3	chr6	65585493	65585693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4805.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	33.52	37.23	59.9	45.05	28.64	37.63	49.83	56.19	49.37	46.7	62.81	22.87
Merged-chr2-167760169-3	chr2	167760064	167760264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68987.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	110.24	72.94	127.78	119.45	156.69	169.96	148.48	219.39	151.06	150.63	254.26	111.52
Merged-chr2-116978371-3	chr2	116978243	116978443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78191.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	18.57	12.07	35.37	15.69	25.77	17.87	30.56	28.29	24.78	15.06	39.7	12.84
Merged-chr2-167055818-3	chr2	167055727	167055927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7107.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	19.38	16.85	29.09	21.72	26.59	18.81	16.61	18.31	25.77	27.62	29.65	19.74
Merged-chr14-19977159-3	chr14	19977078	19977278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	71.0	NM_001038637	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	52.09	27.17	40.5	60.33	25.77	25.09	29.9	44.16	30.68	35.65	43.72	22.87
Merged-chr3-133583151-3	chr3	133583039	133583239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38749.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	121.54	136.08	110.1	113.02	137.87	174.97	130.21	113.27	157.35	175.23	121.1	58.89
Merged-chr3-98087729-3	chr3	98087651	98087851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-72883.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	15.75	11.82	22.25	21.32	24.55	15.68	11.96	29.41	25.57	23.1	29.65	13.47
Merged-chr10-81407733-3	chr10	81407593	81407793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 5 of 8)	intron (NM_026756, intron 5 of 8)	-1882.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	118.72	93.32	115.23	124.28	171.41	160.24	105.96	147.56	149.88	123.52	160.79	74.24
Merged-chr10-123360658-1	chr10	123360558	123360758	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	96582.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	3.23	1.51	1.71	4.83	15.55	17.25	17.94	33.25	0.2	1.0	1.51	0.0
Merged-chr14-122649606-3	chr14	122649517	122649717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115289.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	19.79	22.13	22.25	37.0	34.36	37.94	55.14	35.02	44.84	43.68	58.29	27.88
Merged-chr17-56276917-3	chr17	56276813	56277013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-146.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	179.69	180.09	220.2	171.34	242.19	287.86	191.66	193.37	260.42	263.1	276.87	147.86
Merged-chr19-8757030-3	chr19	8756932	8757132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276704)	promoter-TSS (NM_001276704)	-63.0	NR_132424	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	65.01	51.56	56.48	61.13	67.91	79.02	43.18	39.0	85.17	79.83	86.43	57.01
Merged-chr17-34057439-2	chr17	34057340	34057540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001317722, exon 36 of 65)	exon (NM_001317722, exon 36 of 65)	18302.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	67.84	73.19	63.32	48.67	0.0	0.0	0.33	0.48	161.28	128.54	122.61	64.53
Merged-chr6-128839060-3	chr6	128838998	128839198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12783.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	49.26	54.33	67.88	50.68	61.37	57.38	22.92	23.33	61.37	51.21	56.28	40.41
Merged-chr19-53274166-3	chr19	53274106	53274306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19001.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	54.11	36.97	43.93	59.93	47.05	56.76	86.03	63.67	85.36	61.76	97.48	41.04
Merged-chr10-3740386-3	chr10	3740299	3740499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	22.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	28.67	25.15	39.36	28.56	22.91	22.26	23.25	42.79	47.01	28.12	62.81	24.43
Merged-chr7-116603352-3	chr7	116603247	116603447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	98978.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	32.71	19.87	27.38	30.57	27.82	54.25	30.89	56.36	38.75	41.67	53.77	22.24
Merged-chr3-122245524-5	chr3	122245418	122245618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-39.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	88.84	92.06	91.84	104.17	114.96	140.79	92.01	98.92	184.3	170.21	267.32	74.87
Merged-chr2-29004183-3	chr2	29004071	29004271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	50895.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	18.98	24.9	43.93	24.53	13.91	28.54	20.93	18.76	37.37	29.12	44.72	20.05
Merged-chr5-3152206-3	chr5	3152105	3152305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191688.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	42.4	42.01	27.95	45.05	76.09	76.51	47.5	22.51	60.78	78.33	85.42	34.77
Merged-chr9-49486151-3	chr9	49486041	49486241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	84.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	47.65	51.81	57.05	65.56	62.59	61.46	76.73	64.54	53.11	61.26	99.49	46.36
Merged-chr10-60252768-3	chr10	60252653	60252853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24875.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	117.1	85.27	126.64	132.32	108.41	121.67	119.25	166.09	176.82	120.0	174.36	113.4
Merged-chr19-29383578-3	chr19	29383476	29383676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	16138.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	68.65	71.69	55.33	35.8	89.59	127.62	63.11	54.25	102.47	106.95	96.98	44.17
Merged-chr10-99130806-3	chr10	99130704	99130904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	22669.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	44.01	49.3	62.18	105.38	72.0	56.44	52.82	93.59	48.39	27.11	82.91	47.93
Merged-chr12-85533233-3	chr12	85533127	85533327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59337.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	107.41	56.09	78.72	54.3	111.69	135.15	91.68	76.07	110.54	106.45	133.66	60.46
Merged-chr19-55714151-3	chr19	55714036	55714236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11932.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	83.59	80.99	81.58	85.67	110.46	145.18	75.73	94.77	105.03	117.99	128.13	59.52
Merged-chr9-59659557-3	chr9	59659464	59659664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3196.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	14.94	16.1	24.53	2.82	38.05	26.97	23.25	18.17	30.49	46.7	21.61	12.53
Merged-chr11-51638091-3	chr11	51637997	51638197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2201.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	41.99	35.47	30.23	36.6	43.36	43.59	34.55	49.46	34.42	23.6	40.2	18.17
Merged-chr2-135503809-3	chr2	135503689	135503889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79431.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	24.23	21.88	25.67	15.69	24.55	19.44	15.28	32.22	23.6	40.67	35.68	17.86
Merged-chr11-63922422-3	chr11	63922322	63922522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-138.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	172.02	180.35	208.22	206.73	70.37	87.49	60.79	89.8	175.45	168.71	251.74	147.24
Merged-chr11-101972925-2	chr11	101972837	101973037	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5922.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	7.27	4.53	18.83	6.84	33.96	20.7	33.55	29.52	27.14	24.6	22.61	17.54
Merged-chr1-36511797-3	chr1	36511722	36511922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-45.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	142.14	117.97	91.84	112.62	145.64	157.73	100.65	146.44	183.71	161.18	210.54	80.51
Merged-chr3-146135105-3	chr3	146135012	146135212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134160, intron 8 of 11)	intron (NM_134160, intron 8 of 11)	13321.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	22.61	19.12	18.25	30.57	31.5	23.2	29.56	43.88	49.37	30.63	31.15	16.29
Merged-chr5-109796385-3	chr5	109796284	109796484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37758.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	22.21	24.15	32.52	45.05	25.77	23.52	20.59	32.55	20.65	19.08	22.11	29.76
Merged-chr19-40873453-3	chr19	40873359	40873559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045343, intron 1 of 4)	CpG	5143.0	NR_045343	381223.0	Mm.136844	NR_045343		E030044B06Rik	E030007J07Rik|Gm1618	RIKEN cDNA E030044B06 gene	ncRNA	52.49	49.55	39.93	58.32	50.32	71.81	21.26	43.82	52.32	67.28	70.35	42.29
Merged-chr16-36747957-3	chr16	36747848	36748048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37014.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	32.71	18.86	41.07	84.46	56.87	61.77	56.47	76.23	43.07	45.19	83.41	34.77
Merged-chr4-99194138-3	chr4	99194020	99194220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145967)	promoter-TSS (NM_001145967)	-27.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	38.36	26.91	27.95	38.61	61.37	36.06	40.19	44.8	54.48	68.79	60.8	47.62
Merged-chr7-19361200-3	chr7	19361102	19361302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-14.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	38.76	34.21	35.37	24.13	42.14	55.19	25.24	36.5	64.12	48.2	55.78	28.19
Merged-chr13-93303741-3	chr13	93303634	93303834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-23.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	149.81	161.73	129.49	137.95	146.46	172.78	112.94	139.23	172.3	182.77	172.85	119.98
Merged-chr3-96294017-3	chr3	96293928	96294128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010186)	promoter-TSS (NM_010186)	-59.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	32.3	21.63	48.49	35.8	44.59	37.94	50.49	47.89	39.73	54.23	81.4	36.97
Merged-chr3-108890940-3	chr3	108890847	108891047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177091)	promoter-TSS (NM_177091)	-939.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	19.79	20.12	48.49	37.81	31.91	23.83	17.61	25.79	30.49	44.19	49.24	36.97
Merged-chr11-79254718-3	chr11	79254617	79254817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019653)	promoter-TSS (NM_019653)	-22.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	71.07	76.72	31.38	40.62	50.73	109.12	24.25	38.75	98.74	102.93	63.31	51.06
Merged-chr11-76217587-3	chr11	76217475	76217675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177367)	promoter-TSS (NM_177367)	-3.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	100.14	96.59	85.0	83.66	100.64	98.15	58.46	86.38	130.8	135.57	115.57	67.35
Merged-chrX-42150497-3	chrX	42150374	42150574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021465)	promoter-TSS (NM_021465)	-227.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	32.3	34.46	38.79	41.02	40.09	34.81	33.22	27.59	36.39	57.24	51.25	29.76
Merged-chr7-44005090-3	chr7	44004968	44005168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7610.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	41.59	43.01	46.21	68.78	47.05	76.51	50.82	72.39	31.47	23.1	41.2	26.31
Merged-chr7-28050167-3	chr7	28050063	28050263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011874)	promoter-TSS (NM_011874)	-71.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	233.39	234.42	231.61	250.17	240.55	304.79	178.04	280.43	236.62	240.01	278.38	136.27
Merged-chr13-5861276-3	chr13	5861196	5861396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011803)	promoter-TSS (NM_011803)	-193.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	308.5	293.28	324.59	295.21	337.51	416.74	243.48	315.06	393.18	422.77	433.14	211.77
Merged-chr8-105297676-3	chr8	105297624	105297824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148952)	promoter-TSS (NM_148952)	61.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	59.36	57.85	72.45	53.09	62.59	74.32	58.46	56.3	66.09	58.75	71.35	41.35
Merged-chr16-32698751-3	chr16	32698649	32698849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25595.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	44.01	23.14	24.53	32.18	29.05	41.39	31.56	45.98	26.16	21.09	39.7	21.3
Merged-chr2-19004963-3	chr2	19004866	19005066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6647.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	92.47	96.08	139.76	148.81	62.18	63.34	81.71	110.3	60.19	66.78	73.86	52.0
Merged-chr18-61489723-3	chr18	61489625	61489825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5118.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	16.96	15.34	19.4	21.32	27.41	22.58	10.63	18.73	35.4	16.07	22.61	21.93
Merged-chrX-14639570-3	chrX	14639466	14639666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	428418.0	NM_001034100	385328.0	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	14.54	18.11	22.25	18.1	22.09	17.56	13.62	21.79	31.08	9.54	20.6	11.9
Merged-chr16-52031460-3	chr16	52031323	52031523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-126.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	99.74	114.45	112.38	179.78	152.19	156.47	206.61	204.93	132.17	120.51	200.99	94.61
Merged-chr11-107028035-3	chr11	107027939	107028139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163473)	promoter-TSS (NM_001163473)	-184.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	47.65	41.0	46.78	24.13	50.73	57.07	18.93	37.12	46.81	36.15	51.25	15.04
Merged-chr8-120668222-3	chr8	120668135	120668335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293559)	promoter-TSS (NM_001293559)	10.0	NM_009941	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	84.8	93.07	82.15	77.22	118.64	105.05	64.11	79.68	153.81	187.79	170.34	98.05
Merged-chr11-34053606-3	chr11	34053432	34053632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 2 of 20)	LTR103b_Mam|LTR|ERV1?	6604.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	46.44	32.7	41.64	40.62	50.73	52.05	58.46	46.74	54.48	42.68	48.24	27.57
Merged-chrX-56609794-3	chrX	56609707	56609907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358861)	promoter-TSS (NM_001358861)	26.0	NM_001358861	236794.0	Mm.17815	NM_172780	ENSMUSG00000060681	Slc9a6	3732426M05|6430520C02Rik|NHE6|mKIAA0267	solute carrier family 9 (sodium/hydrogen exchanger), member 6	protein-coding	15.34	21.13	30.23	20.91	31.5	30.73	25.91	38.72	28.91	29.62	56.28	20.05
Merged-chr5-24393593-3	chr5	24393514	24393714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029020)	promoter-TSS (NM_029020)	-542.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	31.9	26.66	32.52	15.69	28.64	40.76	16.28	30.81	30.29	34.14	44.22	23.49
Merged-chr18-35562652-3	chr18	35562548	35562748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010771, intron 1 of 14)	CpG	490.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	50.07	41.0	34.8	40.22	37.23	56.44	38.2	38.83	64.12	42.18	56.78	40.1
Merged-chr9-75559599-3	chr9	75559448	75559648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016963, exon 1 of 10)	5' UTR (NM_016963, exon 1 of 10)	109.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	25.44	46.78	42.78	44.24	54.82	46.1	49.16	49.79	50.35	58.75	65.83	38.22
Merged-chr8-73886134-1	chr8	73886034	73886234	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-532594.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	25.36	19.76	14.95	42.59	1.97	1.51	0.0	0.63
Merged-chr9-62828898-3	chr9	62828789	62828989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9898.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	203.51	227.63	212.21	187.02	213.55	260.89	141.17	183.56	237.01	284.69	278.88	142.22
Merged-chr10-121476416-3	chr10	121476330	121476530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-180.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	153.85	134.82	174.56	152.84	193.92	190.03	169.74	152.58	176.82	188.29	210.04	101.19
Merged-chr14-66231109-3	chr14	66230987	66231187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17263.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	112.26	112.18	125.5	82.05	130.5	190.03	96.0	108.53	150.66	134.56	139.19	56.39
Merged-chr10-99262423-1	chr10	99262323	99262523	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-808.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.88	11.57	20.54	11.66	11.45	13.8	20.59	18.45	19.87	29.12	21.61	13.16
Merged-chr1-94079306-3	chr1	94079214	94079414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26761.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	57.34	43.77	41.64	51.08	36.41	50.49	34.88	61.82	38.75	35.15	42.71	35.09
Merged-chr9-40814835-1	chr9	40814735	40814935	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	13562.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.83	1.26	0.0	0.0	1.23	2.2	1.66	1.96	24.0	19.58	20.6	28.51
Merged-chr7-63989913-3	chr7	63989818	63990018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-51003.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	17.77	24.65	35.94	40.62	22.91	22.89	16.94	27.9	56.65	59.25	87.93	36.34
Merged-chr2-30124570-3	chr2	30124460	30124660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290503)	promoter-TSS (NM_001290503)	51.0	NM_178694	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	55.32	42.51	50.77	49.87	57.68	54.56	32.22	53.24	64.91	62.26	71.35	45.11
Merged-chr8-35654436-3	chr8	35654354	35654554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-65434.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	28.67	22.89	53.05	58.32	50.73	18.5	40.52	68.24	57.04	30.63	80.9	26.0
Merged-chr5-108629767-3	chr5	108629653	108629853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282052)	promoter-TSS (NM_001282052)	24.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	119.93	77.97	73.59	73.6	101.46	93.76	76.07	97.23	123.72	126.53	137.18	82.39
Merged-chr10-89686294-3	chr10	89686210	89686410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130956)	promoter-TSS (NR_130956)	-16.0	NM_001310704	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	88.43	98.6	85.0	86.47	118.23	121.98	79.39	132.9	166.79	146.11	233.15	105.57
Merged-chr19-21053797-1	chr19	21053697	21053897	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50913.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	1.62	4.28	0.0	0.4	15.55	24.15	18.6	15.34	4.33	6.53	3.52	2.51
Merged-chr11-68431929-3	chr11	68431883	68432083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-142.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	36.75	28.42	33.09	45.85	37.23	50.17	40.52	27.0	45.43	55.73	40.7	33.21
Merged-chr10-59237889-3	chr10	59237791	59237991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	15969.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	71.47	66.15	55.9	28.56	42.96	124.17	57.13	24.87	112.7	97.91	110.04	38.53
Merged-chr1-171329257-4	chr1	171329196	171329396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357552)	promoter-TSS (NM_001357552)	151.0	NM_011615	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	30.69	36.72	23.39	32.98	24.14	27.59	37.54	28.29	44.06	47.7	50.25	41.66
Merged-chr2-122467866-3	chr2	122467754	122467954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027919)	promoter-TSS (NR_027919)	-57.0	NR_027919	81913.0	Mm.122640	NR_027919		Bambi-ps1	-	BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)	pseudo	99.74	102.12	103.82	118.25	176.32	145.5	112.94	175.23	128.83	140.59	194.46	68.29
Merged-chr12-84243303-3	chr12	84243207	84243407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24426.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	26.65	23.39	26.81	22.12	34.36	30.1	17.61	43.32	40.12	25.61	37.18	29.13
Merged-chr18-36287577-3	chr18	36287461	36287661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008989, exon 2 of 2)	exon (NM_008989, exon 2 of 2)	6399.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	17.36	19.37	24.53	22.93	24.14	31.67	15.28	23.1	24.19	22.59	22.61	28.51
Merged-chr1-36939831-3	chr1	36939706	36939906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-279.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	68.24	70.68	45.07	49.07	65.05	89.37	73.74	46.91	66.09	87.87	46.23	51.69
Merged-chr2-102815450-3	chr2	102815409	102815609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-68749.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	23.82	23.39	36.51	57.92	41.32	32.93	50.82	60.31	38.35	28.12	52.26	22.24
Merged-chr8-46336517-3	chr8	46336409	46336609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41838.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	44.42	70.93	91.27	88.48	43.77	58.32	50.82	60.08	86.54	49.71	89.44	56.7
Merged-chr3-126596283-3	chr3	126596179	126596379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293665)	promoter-TSS (NM_001293665)	-672.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	85.2	79.73	82.15	62.74	104.32	96.89	67.1	75.03	114.28	103.43	86.43	78.94
Merged-chr17-56884986-3	chr17	56884875	56885075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030141, intron 11 of 13)	intron (NM_030141, intron 11 of 13)	9342.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	33.92	29.18	20.54	21.32	28.23	57.07	17.94	24.42	47.8	26.11	36.18	36.65
Merged-chr19-4878623-3	chr19	4878534	4878734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	-34.0	NM_027476	70605.0	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	128.81	100.11	116.94	119.86	132.55	138.6	73.41	81.36	115.46	123.52	114.57	70.48
Merged-chr11-69998238-3	chr11	69998123	69998323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291125, intron 3 of 4)	intron (NM_001291125, intron 3 of 4)	761.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	68.65	47.29	77.01	62.34	51.96	63.34	41.85	61.74	76.71	71.8	72.36	40.1
Merged-chr2-120008841-3	chr2	120008727	120008927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-8690.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	32.71	32.2	37.65	61.94	29.86	31.98	26.57	41.75	41.5	33.64	69.34	31.64
Merged-chr9-108999280-3	chr9	108999163	108999363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	7361.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	31.9	21.13	41.07	30.16	32.73	33.55	30.23	43.57	45.24	39.67	62.31	26.63
Merged-chr13-67813978-4	chr13	67813882	67814082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198322, intron 1 of 3)	CpG	166.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	27.46	28.17	27.95	37.81	26.18	29.48	27.9	21.14	35.01	36.15	32.66	35.09
Merged-chr11-51916780-3	chr11	51916702	51916902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50829.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	49.67	37.98	44.5	23.33	66.27	68.67	41.19	46.74	69.23	70.8	79.89	35.71
Merged-chr15-76313441-3	chr15	76313322	76313522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-6177.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	24.23	14.59	19.97	22.12	30.68	32.61	15.94	31.4	33.83	42.68	29.14	31.64
Merged-chr18-23805858-3	chr18	23805790	23805990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1920.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	64.61	65.15	79.29	76.02	83.05	75.57	49.16	83.58	110.34	105.44	130.65	57.01
Merged-chr6-37419781-3	chr6	37419679	37419879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22369.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	20.19	21.13	23.39	24.94	27.82	34.18	16.94	30.62	41.89	38.66	48.24	23.81
Merged-chr6-98332898-3	chr6	98332772	98332972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	9882.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	51.28	59.86	61.04	90.49	46.64	73.38	50.49	87.39	84.97	83.35	142.2	69.86
Merged-chr18-39021038-3	chr18	39020942	39021142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	27897.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	50.47	38.48	50.2	48.67	60.14	54.88	45.51	68.61	45.43	30.13	50.25	30.7
Merged-chr12-79744334-3	chr12	79744245	79744445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	180388.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	20.19	22.13	31.38	39.82	18.0	26.03	15.28	20.3	21.83	18.08	25.63	19.11
Merged-chr9-40733747-1	chr9	40733647	40733847	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	47783.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.42	3.02	3.42	2.82	18.82	9.41	13.95	13.85	1.97	0.0	2.01	0.94
Merged-chr6-113377897-4	chr6	113377849	113378049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133932)	promoter-TSS (NM_133932)	-164.0	NM_026552	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	61.78	74.7	43.35	30.97	49.91	71.81	64.77	42.81	60.58	93.89	48.74	48.87
Merged-chr14-55724569-3	chr14	55724493	55724693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2330.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	70.66	77.47	79.29	49.47	74.46	70.87	51.15	58.35	117.03	100.42	79.39	50.75
Merged-chr8-14090440-3	chr8	14090339	14090539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034862)	promoter-TSS (NM_001034862)	-112.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	224.11	253.54	337.14	303.66	305.6	325.8	267.73	334.54	308.8	332.9	403.49	185.45
Merged-chr6-29526820-6	chr6	29526727	29526927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311083, intron 1 of 9)	CpG	202.0	NM_012057	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	54.51	52.82	32.52	22.93	32.32	68.36	41.52	22.29	59.79	76.32	48.74	23.81
Merged-chr11-69980690-3	chr11	69980600	69980800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-370.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	92.47	99.86	104.39	105.38	95.73	135.78	64.44	77.83	131.39	153.64	118.08	93.04
Merged-chr19-3928138-3	chr19	3928037	3928237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	1579.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	16.15	32.45	34.23	31.77	35.18	37.63	25.91	34.77	40.52	35.65	42.71	29.45
Merged-chr11-96916151-2	chr11	96916049	96916249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030248, intron 2 of 13)	CpG	365.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	18.57	18.36	23.39	7.24	18.41	32.93	9.97	12.0	15.74	12.55	15.58	11.9
Merged-chr10-41605093-3	chr10	41604994	41605194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358562, exon 29 of 48)	exon (NM_001358562, exon 29 of 48)	37078.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	38.76	41.5	66.17	43.04	27.82	27.28	42.19	44.94	42.48	43.68	45.73	34.15
Merged-chrM-6259-2	chrM	6159	6359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											32344.03	33083.47	36857.77	41063.79	29533.59	35583.62	31131.72	29025.26	0.0	0.0	0.0	0.0
Merged-chr8-119792055-3	chr8	119791940	119792140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13624.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	48.05	27.42	77.58	59.12	54.41	42.96	48.16	78.39	50.16	42.18	71.35	45.74
Merged-chr10-19942117-3	chr10	19942024	19942224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	7598.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	70.26	49.8	41.64	63.15	65.46	79.33	53.48	57.36	62.55	77.83	59.29	35.71
Merged-chr1-165766706-3	chr1	165766623	165766823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2965.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	73.89	35.47	47.92	64.35	64.23	62.4	37.87	66.42	69.43	69.29	58.29	44.17
Merged-chr1-131866559-3	chr1	131866445	131866645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-732.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	71.88	45.53	31.95	79.23	55.64	51.43	46.5	51.17	50.35	39.16	63.31	28.51
Merged-chr9-107888077-3	chr9	107887989	107888189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-40.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	62.18	39.49	38.79	53.89	69.55	54.25	57.13	80.61	57.04	53.22	66.33	48.87
Merged-chr9-65561147-3	chr9	65561031	65561231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18956.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	28.67	25.4	47.35	33.78	58.91	53.31	34.55	48.25	57.63	47.2	69.85	26.63
Merged-chr18-77713992-3	chr18	77713839	77714039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	71.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	56.13	65.15	53.05	51.48	42.96	46.72	51.82	55.57	71.79	54.23	73.36	42.92
Merged-chr1-34803914-2	chr1	34803819	34804019	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183019, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2197.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	1.21	4.02	1.14	0.8	22.91	28.54	18.27	19.26	21.05	16.57	26.13	13.47
Merged-chr17-36145269-2	chr17	36145170	36145370	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033517, intron 1 of 3)	CpG	252.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	1.62	2.52	1.14	3.22	19.64	24.15	11.96	30.9	35.6	31.13	23.11	18.8
Merged-chr8-69271014-3	chr8	69270914	69271114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172491)	promoter-TSS (NM_172491)	-66.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	50.07	57.6	62.75	46.66	66.68	102.54	52.82	82.35	80.25	61.76	84.42	45.42
Merged-chr1-60937512-3	chr1	60937406	60937606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1d|LTR|Gypsy	28481.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	27.05	27.67	33.09	23.73	23.73	31.04	14.28	35.02	35.6	26.11	50.75	31.01
Merged-chr8-22706599-3	chr8	22706539	22706739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010546)	promoter-TSS (NM_010546)	-56.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	41.59	40.75	31.38	39.82	43.36	35.12	55.47	42.76	46.62	46.19	61.3	24.43
Merged-chr10-81433064-3	chr10	81432952	81433152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5879.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	83.99	83.0	111.81	62.74	112.5	127.31	64.77	118.15	131.39	133.06	216.07	90.22
Merged-chr6-134035839-4	chr6	134035730	134035930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007961, exon 1 of 8)	5' UTR (NM_007961, exon 1 of 8)	130.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	25.84	29.43	35.37	27.35	38.46	41.39	46.17	48.36	58.02	59.75	73.36	30.7
Merged-chr2-59207822-3	chr2	59207697	59207897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46947.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	58.95	68.92	81.0	102.16	72.41	84.66	84.7	104.72	54.88	52.72	79.39	41.98
Merged-chr10-53925612-3	chr10	53925515	53925715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150181.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	56.53	39.74	53.05	50.68	76.91	74.63	69.09	83.78	61.96	46.7	66.83	39.47
Merged-chr8-70042786-3	chr8	70042680	70042880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167939)	promoter-TSS (NM_001167939)	-33.0	NM_027481	70616.0	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	45.63	44.52	34.8	39.82	56.87	61.46	24.91	40.91	72.77	56.24	59.8	39.16
Merged-chrX-106186995-3	chrX	106186888	106187088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008828)	promoter-TSS (NM_008828)	-112.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	115.89	103.13	103.82	104.57	130.91	128.88	108.62	134.47	161.48	124.52	172.85	90.85
Merged-chr19-17166557-3	chr19	17166481	17166681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	ORR1F|LTR|ERVL-MaLR	172924.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	118.31	111.68	99.83	133.13	78.96	125.43	91.68	113.38	104.05	112.97	91.45	64.85
Merged-chr11-61728224-3	chr11	61728125	61728325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7426.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	28.27	13.58	30.23	25.74	46.23	29.79	33.88	51.14	50.94	51.21	68.84	36.97
Merged-chr19-3537895-3	chr19	3537807	3538007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164159, intron 1 of 21)	intron (NM_001164159, intron 1 of 21)	37842.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	23.82	36.72	30.23	52.69	24.55	19.44	24.25	35.1	21.64	24.1	27.13	17.23
Merged-chr11-111089069-2	chr11	111088973	111089173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22909.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	32.71	38.74	49.63	35.39	3.27	5.96	4.65	0.64	69.04	50.21	47.74	33.21
Merged-chr1-180250244-3	chr1	180250139	180250339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4289.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	39.98	29.93	31.95	40.62	45.0	26.65	33.22	43.18	46.03	34.14	53.26	36.97
Merged-chr7-97123551-3	chr7	97123457	97123657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	41806.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	44.82	23.9	23.39	32.98	51.96	24.77	24.58	41.55	35.8	26.61	37.18	35.71
Merged-chr1-128592338-3	chr1	128592268	128592468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-69.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	58.95	46.03	57.62	45.05	73.64	88.74	68.1	78.7	68.64	86.86	55.27	60.15
Merged-chr2-30545257-3	chr2	30545158	30545358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-49786.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	36.34	19.12	19.4	33.78	21.27	23.52	19.27	20.05	47.21	36.15	27.64	28.51
Merged-chr5-53188820-3	chr5	53188713	53188913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	24639.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	46.03	47.79	58.19	48.26	54.0	44.84	44.18	69.76	65.3	53.22	63.31	34.77
Merged-chr7-63897023-3	chr7	63896928	63897128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	CpG	-19829.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	109.83	92.81	119.23	80.44	109.64	96.89	52.15	95.89	112.9	122.01	165.32	82.7
Merged-chr10-91083538-1	chr10	91083438	91083638	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	499.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	2.42	9.56	3.42	1.21	7.77	7.84	7.64	11.94	7.08	9.04	7.54	5.95
Merged-chr1-84935901-3	chr1	84935794	84935994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	-811.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	16.15	11.82	18.83	24.53	33.55	26.03	20.93	34.79	20.85	20.59	22.61	16.6
Merged-chr2-155382191-3	chr2	155382098	155382298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178111, intron 1 of 3)	CpG	342.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	67.84	56.09	63.89	66.36	95.73	108.81	42.52	77.69	104.44	88.87	101.5	74.24
Merged-chr4-149170807-3	chr4	149170728	149170928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4123.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	28.27	13.58	19.4	17.7	21.27	41.39	18.6	22.82	37.96	36.65	25.12	31.33
Merged-chr8-69974411-3	chr8	69974301	69974501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113346)	promoter-TSS (NM_001113346)	-18.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	108.22	100.36	59.9	67.57	92.87	100.66	68.76	75.7	118.21	101.43	97.48	49.81
Merged-chr12-83632171-3	chr12	83632074	83632274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-60.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	147.79	163.24	114.09	131.52	193.1	200.37	89.02	127.09	202.2	238.0	215.57	106.2
Merged-chr11-62648751-3	chr11	62648654	62648854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	90.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	54.51	33.7	30.23	20.11	50.73	70.55	30.56	47.19	52.12	56.74	87.43	34.15
Merged-chr16-45657777-1	chr16	45657677	45657877	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172455, intron 17 of 17)	intron (NM_172455, intron 17 of 17)	-3659.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	6.86	1.76	1.71	6.03	6.95	3.14	4.32	3.7	86.74	95.9	140.7	67.98
Merged-chr11-32331258-3	chr11	32331208	32331408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16503.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	78.34	61.88	96.41	95.72	35.59	58.01	39.53	59.61	52.32	51.21	46.73	24.43
Merged-chr15-103250336-3	chr15	103250239	103250439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302338, intron 2 of 2)	intron (NM_001302338, intron 2 of 2)	1337.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	31.5	36.47	31.95	32.58	24.96	37.32	20.26	30.03	43.07	34.14	43.72	17.86
Merged-chr5-28259612-3	chr5	28259517	28259717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13829.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	29.48	21.63	29.66	22.12	23.32	34.18	22.92	24.67	51.34	31.63	46.73	21.93
Merged-chr8-120720045-3	chr8	120719953	120720153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16305.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	35.53	35.72	59.9	70.79	35.59	47.98	37.2	59.92	49.96	59.25	73.86	22.87
Merged-chr2-6179926-3	chr2	6179818	6180018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13333.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	29.48	31.69	73.02	53.09	84.68	68.99	57.47	92.41	39.14	36.15	78.89	43.86
Merged-chr10-16652592-3	chr10	16652491	16652691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	443191.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	32.3	41.0	33.66	38.21	30.27	44.53	26.57	41.27	77.5	69.79	60.8	31.95
Merged-chr19-21180043-3	chr19	21179920	21180120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	75310.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	38.76	37.98	43.93	43.84	56.87	53.93	55.14	46.43	49.96	48.2	85.42	40.1
Merged-chr15-100204775-3	chr15	100204675	100204875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172819, intron 27 of 32)	intron (NM_172819, intron 27 of 32)	-16739.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	59.36	41.0	50.2	56.31	54.0	70.87	42.19	64.77	60.97	51.72	96.48	58.58
Merged-chr14-57999199-3	chr14	57999084	57999284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028643)	promoter-TSS (NM_028643)	78.0	NM_028643	68514.0	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	19.79	28.42	15.97	26.55	25.36	27.59	17.94	21.79	22.42	33.14	32.16	12.22
Merged-chr4-134920340-3	chr4	134920249	134920449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3276.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	89.24	64.39	84.43	86.47	81.41	116.34	68.76	88.79	89.69	103.94	109.54	69.55
Merged-chr15-88751493-3	chr15	88751387	88751587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-224.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	148.6	140.86	115.8	151.23	125.59	155.22	123.9	156.2	231.11	196.83	246.22	109.64
Merged-chr1-55049244-3	chr1	55049156	55049356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3514.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	30.28	27.67	31.95	20.51	37.23	45.15	39.53	23.05	52.52	37.16	54.77	19.11
Merged-chr17-63931768-3	chr17	63931665	63931865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-6207.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	30.69	19.62	28.52	42.23	16.77	17.87	29.23	45.08	47.4	38.16	55.78	37.59
Merged-chr7-43637296-3	chr7	43637163	43637363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 2 of 5)	intron (NM_028236, intron 2 of 5)	2524.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	28.67	40.24	38.22	25.34	42.14	52.68	39.53	31.21	64.71	48.2	55.27	40.1
Merged-chr9-106230500-3	chr9	106230447	106230647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7949.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	63.4	64.89	47.35	42.23	60.96	91.88	29.56	46.79	61.96	65.27	54.77	31.01
Merged-chr7-45091271-1	chr7	45091171	45091371	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355045, intron 2 of 6)	intron (NM_001355045, intron 2 of 6)	942.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	15.75	5.53	7.99	4.42	34.36	27.28	15.94	21.64	7.87	6.53	2.01	4.7
Merged-chr17-5260030-3	chr17	5259937	5260137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 5 of 19)	L1MD3|LINE|L1	158730.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	21.0	11.82	27.38	30.57	20.46	28.85	13.95	34.6	42.48	33.14	58.79	26.31
Merged-chr4-108347229-3	chr4	108347131	108347331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19079.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	41.99	35.47	37.08	36.6	63.41	58.01	40.19	27.36	78.09	90.38	76.88	30.39
Merged-chr5-140607248-3	chr5	140607164	140607364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-77.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	136.48	117.72	111.24	89.69	121.5	157.41	127.55	160.01	129.81	126.03	146.72	76.12
Merged-chr8-123248773-3	chr8	123248670	123248870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310661, exon 5 of 15)	exon (NM_001310661, exon 5 of 15)	-5425.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	22.21	34.21	24.53	31.37	28.23	21.64	17.61	27.62	21.83	17.07	29.65	22.87
Merged-chr1-51493731-1	chr1	51493631	51493831	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15332.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	11.31	12.07	3.42	4.83	12.68	17.56	4.65	7.18	8.85	11.05	7.03	3.45
Merged-chr10-5191761-3	chr10	5191667	5191867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	2940.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	49.67	53.07	108.39	83.26	95.73	109.44	75.07	134.1	127.26	105.44	112.05	101.81
Merged-chr1-36947661-3	chr1	36947569	36947769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8142.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	31.5	23.64	30.23	26.95	17.59	16.93	10.63	18.56	42.29	23.1	37.69	30.39
Merged-chr2-38368968-1	chr2	38368868	38369068	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010710, exon 5 of 5)	exon (NM_010710, exon 5 of 5)	17660.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	8.08	3.27	0.57	1.61	4.5	11.6	5.31	9.67	9.05	3.01	6.03	3.45
Merged-chr4-62287101-3	chr4	62287002	62287202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	673.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	37.96	36.47	26.81	63.15	56.46	48.92	29.56	51.87	78.28	64.27	60.3	32.27
Merged-chr7-83659601-3	chr7	83659515	83659715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4120.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	119.12	120.23	119.8	109.8	107.19	159.92	115.26	106.74	148.89	158.67	131.65	70.48
Merged-chr9-107612327-3	chr9	107612218	107612418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3077.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	44.82	27.17	32.52	32.98	43.77	46.72	29.9	33.36	50.75	49.71	41.2	34.77
Merged-chr13-38635109-3	chr13	38635017	38635217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-8.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	49.26	51.06	51.34	66.36	54.0	50.49	42.85	53.55	74.94	61.26	78.89	45.11
Merged-chr6-120836656-1	chr6	120836556	120836756	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	426.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	13.73	15.85	10.84	11.66	17.18	17.56	9.3	12.2	12.78	21.59	15.07	18.8
Merged-chr1-92473847-3	chr1	92473735	92473935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024197)	promoter-TSS (NM_024197)	-77.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	74.7	110.17	87.28	92.1	67.5	125.43	66.43	82.23	139.26	150.63	108.03	105.57
Merged-chr1-180973884-3	chr1	180973780	180973980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 22 of 22)	(CAGA)n|Simple_repeat|Simple_repeat	31362.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	39.98	29.93	53.62	53.49	47.87	41.71	41.52	61.96	38.55	33.14	36.18	35.71
Merged-chr2-117120729-6	chr2	117120597	117120797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033524)	promoter-TSS (NM_033524)	-374.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	46.44	29.93	30.8	47.06	45.41	53.93	36.87	34.68	49.96	61.76	51.76	38.85
Merged-chr17-87301764-3	chr17	87301641	87301841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	L1MB2|LINE|L1	18855.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	107.41	101.37	136.91	118.65	120.28	109.44	88.69	126.59	79.27	59.75	66.83	40.41
Merged-chr15-39112816-3	chr15	39112728	39112928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172402)	promoter-TSS (NM_172402)	-46.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	249.55	221.09	211.07	177.77	208.23	285.04	168.08	239.33	289.13	313.82	360.78	165.72
Merged-chr16-57550317-3	chr16	57550203	57550403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1061.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	73.09	59.61	68.45	80.04	76.5	84.35	48.5	71.24	98.15	91.38	97.48	51.06
Merged-chr5-32745887-3	chr5	32745801	32746001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347332, intron 1 of 8)	intron (NM_001347332, intron 1 of 8)	441.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	62.99	35.97	55.9	43.44	59.32	59.89	35.54	35.07	55.66	67.28	68.34	20.99
Merged-chrX-121331491-1	chrX	121331391	121331591	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	-1018265.0	NM_001281531	624957.0		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	3.23	3.02	9.13	4.02	15.55	18.19	18.6	17.02	0.39	0.0	0.0	0.0
Merged-chr11-79623313-3	chr11	79623240	79623440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-177.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	109.43	98.35	70.74	97.73	118.23	114.14	75.07	81.14	120.96	134.56	97.98	54.51
Merged-chr19-4169542-3	chr19	4169443	4169643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134148, exon 9 of 10)	exon (NM_134148, exon 9 of 10)	5936.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	151.42	155.95	142.04	165.3	164.87	199.12	99.98	121.15	159.12	162.68	160.29	88.97
Merged-chr4-89311047-3	chr4	89310954	89311154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-22.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	73.49	61.12	73.02	78.03	78.55	114.45	83.04	105.31	118.6	90.88	128.13	83.33
Merged-chr7-44360110-3	chr7	44360022	44360222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027049)	TTS (NM_027049)	14908.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	35.94	20.63	22.25	37.81	32.73	43.9	21.26	33.93	41.7	55.23	35.17	20.68
Merged-chr8-70769118-3	chr8	70769013	70769213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008841, exon 15 of 16)	exon (NM_008841, exon 15 of 16)	-2450.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	36.34	21.63	45.64	20.51	57.27	53.62	38.53	46.93	77.69	69.29	65.32	41.04
Merged-chr2-152080897-3	chr2	152080749	152080949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160410)	promoter-TSS (NM_001160410)	-680.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	21.4	18.61	50.77	45.45	22.09	17.25	20.93	45.08	25.18	19.08	42.71	18.17
Merged-chr13-60650138-3	chr13	60650021	60650221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	47910.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	39.17	25.4	43.93	36.6	53.59	35.12	37.87	53.13	41.3	47.7	40.7	18.8
Merged-chr12-78980879-3	chr12	78980773	78980973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178745, intron 1 of 2)	intron (NM_178745, intron 1 of 2)	2605.0	NM_001170401	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	85.6	69.67	115.8	105.38	123.96	88.74	86.03	117.76	103.06	88.87	135.67	65.47
Merged-chr1-156719131-3	chr1	156719038	156719238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-228.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	113.87	105.89	139.76	129.51	107.59	140.79	99.65	123.14	144.17	140.09	213.05	89.59
Merged-chr10-67284881-3	chr10	67284801	67285001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036293, intron 1 of 3)	CpG	380.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	12.52	13.58	20.54	13.67	18.0	28.22	18.6	19.29	26.16	30.63	32.66	19.11
Merged-chrX-168779320-3	chrX	168779215	168779415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15784.0	NM_009707	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	20.59	19.87	38.79	34.99	45.0	22.58	29.56	50.38	24.98	20.59	40.2	23.18
Merged-chr16-11144131-3	chr16	11144039	11144239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9607.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	308.1	521.17	306.91	345.09	117.82	132.95	115.93	11.19	106.8	112.97	130.14	140.66
Merged-chr10-71369626-3	chr10	71369511	71369711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21848.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	50.07	39.99	47.35	67.97	83.87	74.63	100.65	116.13	43.27	47.7	78.39	44.8
Merged-chr7-138919729-3	chr7	138919624	138919824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10218.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	64.61	43.77	50.2	44.64	67.09	72.44	52.48	71.58	48.78	41.17	67.33	40.41
Merged-chr1-55131151-3	chr1	55131071	55131271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025283)	promoter-TSS (NM_025283)	-74.0	NM_001310585	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	118.72	134.82	141.47	89.29	138.28	141.42	101.31	134.36	166.2	161.18	177.38	84.58
Merged-chr3-90254209-3	chr3	90254098	90254298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013901)	TTS (NM_013901)	340.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	93.68	80.49	85.57	84.06	84.68	116.96	61.12	71.55	91.85	123.52	150.24	65.79
Merged-chrX-163908368-3	chrX	163908289	163908489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026887)	promoter-TSS (NM_026887)	-628.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	27.46	15.85	23.39	17.7	14.32	11.92	14.62	23.66	22.23	25.11	34.17	24.75
Merged-chr17-88042616-3	chr17	88042512	88042712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	22320.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	55.32	34.46	49.63	26.95	37.64	30.42	31.22	46.91	56.25	36.65	55.78	36.65
Merged-chr11-69100034-3	chr11	69099932	69100132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	-120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	94.08	72.19	77.58	57.92	84.68	92.5	69.42	63.81	109.36	78.83	103.51	74.24
Merged-chr12-54656623-3	chr12	54656511	54656711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-39.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	197.05	166.51	205.36	224.83	203.32	244.59	177.05	259.74	246.84	236.99	363.29	161.33
Merged-chr12-38779197-1	chr12	38779097	38779297	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-885.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	18.98	24.15	26.24	13.67	18.41	29.79	15.28	23.58	29.7	19.58	33.67	23.49
Merged-chr2-119897531-1	chr2	119897431	119897631	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013720, intron 1 of 23)	CpG	303.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	49.67	46.53	47.35	32.98	49.09	65.22	34.88	41.64	68.25	56.24	68.34	58.27
Merged-chr6-114362587-3	chr6	114362475	114362675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-35361.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	28.67	17.36	44.5	21.32	29.46	27.59	37.2	41.89	22.42	23.1	44.72	15.04
Merged-chr9-114401177-4	chr9	114401111	114401311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009752, exon 1 of 16)	exon (NM_009752, exon 1 of 16)	116.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	26.65	37.98	26.24	37.81	32.73	47.04	37.87	32.16	32.45	45.19	37.69	30.07
Merged-chr3-9005713-3	chr3	9005605	9005805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025263)	promoter-TSS (NM_001025263)	-982.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	128.81	89.8	167.71	152.03	157.5	169.02	139.51	200.33	165.81	145.61	208.03	101.19
Merged-chr16-20611620-3	chr16	20611518	20611718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	17.0	NM_025462	110599566.0	Mm.263319	NM_025462		Eef1akmt4	-	eukaryotic translation elongation factor 1 alpha lysine specific methyltransferase 4	protein-coding	56.13	72.44	58.19	66.36	69.55	86.23	78.06	60.45	70.02	86.86	112.56	60.15
Merged-chr6-119918861-3	chr6	119918753	119918953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149727, intron 7 of 10)	intron (NR_149727, intron 7 of 10)	16155.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	68.24	53.32	54.76	54.3	43.36	79.96	58.79	57.9	46.81	41.17	55.78	29.76
Merged-chr10-80167670-3	chr10	80167555	80167755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-184.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	160.31	181.6	189.96	160.08	192.28	264.03	159.44	143.52	255.3	262.6	217.57	149.74
Merged-chr11-103133100-3	chr11	103132991	103133191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-248.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	175.65	153.94	119.23	111.81	160.78	206.64	93.67	111.76	167.38	167.7	128.64	87.09
Merged-chr15-100081323-3	chr15	100081223	100081423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	42659.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	30.28	31.69	21.11	30.97	41.32	26.34	27.57	45.65	41.3	31.13	34.17	19.42
Merged-chr1-77488110-1	chr1	77488010	77488210	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	8658.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.65	1.01	3.42	5.63	24.55	11.6	13.62	29.1	5.51	2.01	25.63	5.01
Merged-chr2-51149178-3	chr2	51149078	51149278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028810)	promoter-TSS (NM_028810)	-67.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	92.47	85.02	60.47	65.96	64.64	90.31	31.22	72.17	71.59	78.33	93.96	28.19
Merged-chr1-13372723-4	chr1	13372657	13372857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-328.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	83.99	89.29	78.72	114.22	85.09	116.65	146.49	85.85	71.79	100.42	73.36	58.89
Merged-chr14-103719046-3	chr14	103718941	103719141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19609.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	19.79	23.64	20.54	23.33	28.64	26.97	22.59	31.71	30.49	32.64	35.68	25.69
Merged-chr5-121384070-3	chr5	121383963	121384163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163470, exon 2 of 12)	exon (NM_001163470, exon 2 of 12)	1346.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	39.17	24.65	38.79	28.15	37.23	42.96	16.61	35.16	49.96	45.69	42.21	26.94
Merged-chr2-154603885-3	chr2	154603813	154604013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-240.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	184.94	177.08	195.67	172.14	352.65	449.98	300.95	354.0	212.23	226.95	236.67	129.07
Merged-chr6-136519070-3	chr6	136518962	136519162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	CpG	211.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	60.57	49.3	41.64	47.06	63.82	72.12	51.82	53.36	84.97	81.84	73.86	54.51
Merged-chr5-64156379-3	chr5	64156291	64156491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3869.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	28.27	18.36	19.4	34.99	25.77	24.77	14.95	23.07	28.52	21.09	31.15	20.68
Merged-chr17-28622511-3	chr17	28622407	28622607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016795)	promoter-TSS (NM_016795)	14.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	29.07	25.15	26.81	22.52	45.41	32.61	21.92	30.81	53.89	36.15	35.68	18.17
Merged-chr5-76951433-6	chr5	76951349	76951549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356971, exon 1 of 10)	5' UTR (NM_001356971, exon 1 of 10)	129.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	53.7	64.39	56.48	72.4	61.37	85.61	99.65	63.65	80.25	73.81	87.93	61.09
Merged-chr9-108649911-3	chr9	108649808	108650008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	-500.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	36.34	25.91	45.07	25.74	32.73	35.12	24.25	30.42	51.93	43.18	51.25	30.07
Merged-chr3-105816277-3	chr3	105816179	105816379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045845, intron 2 of 2)	intron (NR_045845, intron 2 of 2)	712.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	104.18	66.4	79.86	48.67	41.32	75.26	54.81	59.3	88.71	84.35	135.67	59.52
Merged-chr18-80206747-3	chr18	80206629	80206829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178604)	promoter-TSS (NM_178604)	-69.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	156.67	172.05	131.21	153.64	193.51	205.08	139.51	202.57	186.46	189.8	234.66	120.92
Merged-chr9-110333316-3	chr9	110333203	110333403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001103162)	promoter-TSS (NM_001103162)	15.0	NM_001103162	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	62.99	47.79	59.9	48.26	57.68	71.81	36.54	55.35	95.79	74.81	79.89	57.01
Merged-chr5-21024753-1	chr5	21024653	21024853	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356591, intron 1 of 16)	intron (NM_001356591, intron 1 of 16)	10494.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.25	5.28	12.55	4.02	4.5	2.51	8.3	11.86	9.44	0.5	7.54	3.13
Merged-chr1-55215632-3	chr1	55215535	55215735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	11147.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	21.8	32.7	30.8	36.2	33.14	36.37	41.85	50.97	43.07	56.74	92.96	44.48
Merged-chr19-55253963-3	chr19	55253866	55254066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027976, exon 1 of 22)	5' UTR (NM_027976, exon 1 of 22)	597.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	37.15	30.43	39.93	41.43	37.23	50.49	28.9	35.3	36.98	30.63	49.24	24.43
Merged-chr11-61855082-3	chr11	61854995	61855195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	-3.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	45.63	34.46	26.24	22.52	29.46	37.32	14.62	20.66	38.75	45.69	27.64	30.7
Merged-chr15-5495640-3	chr15	5495545	5495745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-673.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	39.17	37.23	21.68	29.76	31.09	42.02	32.88	32.86	50.94	44.69	43.72	33.52
Merged-chr13-23756957-3	chr13	23756890	23757090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178193)	promoter-TSS (NM_178193)	53.0	NM_178193	326620.0	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	71.07	51.56	66.17	81.24	58.09	67.73	73.08	82.71	76.51	64.27	88.44	49.81
Merged-chr6-29164762-3	chr6	29164654	29164854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133925)	promoter-TSS (NM_133925)	-30.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	41.99	50.31	50.2	45.85	47.87	67.1	29.23	42.7	33.63	50.71	54.77	36.65
Merged-chr7-19228774-3	chr7	19228669	19228869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207525, intron 1 of 1)	CpG	380.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	181.71	225.12	254.42	207.54	192.28	262.15	167.08	197.64	251.56	267.62	320.08	147.24
Merged-chr2-164832943-3	chr2	164832861	164833061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	89.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	21.8	31.44	31.38	16.89	21.68	34.49	14.62	18.42	17.9	27.62	34.17	19.11
Merged-chr6-123123306-3	chr6	123123190	123123390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	-26.0	NM_011999	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	40.78	37.23	49.06	76.02	42.14	29.48	44.18	61.18	47.01	43.68	35.17	26.94
Merged-chr9-7345675-3	chr9	7345584	7345784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	1287.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	35.13	30.18	40.5	69.98	53.59	39.82	37.54	64.93	47.6	34.14	56.78	33.83
Merged-chr15-10583577-1	chr15	10583477	10583677	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356534, intron 12 of 16)	intron (NM_001356534, intron 12 of 16)	-16716.0	NR_033541	100038608.0	Mm.450744	NR_033541	ENSMUSG00000115667	Gm10389	-	predicted gene 10389	ncRNA	4.85	3.27	5.7	1.61	2.05	14.11	5.65	10.18	6.69	0.0	5.02	2.82
Merged-chr8-35430732-3	chr8	35430652	35430852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55011.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	21.0	17.86	36.51	27.35	29.46	40.45	34.88	56.8	11.21	13.05	23.62	16.6
Merged-chr10-128526061-3	chr10	128525950	128526150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-191.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	209.17	171.79	193.96	190.24	249.14	251.8	181.7	200.5	265.73	276.16	280.39	184.2
Merged-chr11-107473310-3	chr11	107473234	107473434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2614.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	25.44	23.39	19.4	10.46	25.36	29.79	10.3	21.76	25.96	24.1	22.61	20.36
Merged-chr7-127842513-3	chr7	127842420	127842620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009294, exon 3 of 11)	exon (NM_009294, exon 3 of 11)	712.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	21.4	29.43	37.08	24.53	38.05	60.21	32.88	38.27	55.27	53.22	90.95	47.62
Merged-chr7-143685872-3	chr7	143685770	143685970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	5.0	NM_001308111	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	66.63	66.4	70.74	65.16	53.59	62.09	28.23	61.63	86.74	77.83	61.81	40.72
Merged-chr13-20313633-3	chr13	20313590	20313790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-159300.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	26.65	28.93	41.07	39.42	33.96	34.49	26.91	25.4	30.88	33.14	34.67	27.57
Merged-chr14-8098215-3	chr14	8098102	8098302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178279)	promoter-TSS (NM_178279)	-9.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	25.44	24.65	15.4	20.11	41.73	43.59	28.9	53.52	37.96	57.24	69.34	31.01
Merged-chr14-120477591-3	chr14	120477488	120477688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-873.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	242.28	278.19	306.34	278.72	344.47	404.82	314.23	395.69	368.59	408.71	598.96	231.82
Merged-chr15-81074694-3	chr15	81074586	81074786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	30361.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	48.05	43.01	47.92	43.44	55.23	58.01	31.89	51.76	64.32	47.7	57.79	22.24
Merged-chr5-113908192-3	chr5	113908139	113908339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 1 of 10)	CpG	467.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	35.13	33.2	43.35	24.94	34.77	41.39	27.9	57.59	44.84	53.73	58.79	31.33
Merged-chr4-55514902-3	chr4	55514809	55515009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	17566.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	29.07	34.21	27.95	52.69	36.82	71.18	44.18	44.33	40.12	58.24	79.89	44.17
Merged-chr5-137624221-3	chr5	137624117	137624317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027708, intron 3 of 9)	intron (NM_027708, intron 3 of 9)	861.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	23.42	15.09	36.51	19.71	24.96	29.16	15.28	29.92	19.08	21.09	25.12	15.66
Merged-chr19-12472102-3	chr19	12472016	12472216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172442, intron 8 of 8)	intron (NM_172442, intron 8 of 8)	11337.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	43.61	34.46	53.05	71.99	55.23	45.47	69.76	62.8	33.63	22.09	27.64	25.06
Merged-chr1-36570155-3	chr1	36570033	36570233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11752.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	32.71	22.64	45.64	20.11	21.27	37.63	34.21	14.89	54.48	44.19	49.24	11.9
Merged-chr1-194977012-1	chr1	194976912	194977112	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-53.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	8.48	6.79	13.12	8.85	9.41	11.92	14.62	11.16	12.39	15.57	21.61	16.6
Merged-chr3-69154905-3	chr3	69154793	69154993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	23660.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	56.53	39.74	30.23	29.76	58.5	84.98	43.51	73.12	66.87	55.23	45.73	46.68
Merged-chr1-84562045-3	chr1	84561961	84562161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 4 of 12)	intron (NM_152915, intron 4 of 12)	-133778.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	68.24	81.24	86.14	85.67	102.28	94.07	85.04	128.44	110.93	137.07	153.26	104.32
Merged-chr11-69758660-3	chr11	69758565	69758765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-32.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	130.83	141.61	123.22	144.79	154.23	174.35	104.97	115.32	169.74	186.78	181.4	94.61
Merged-chr12-87413470-3	chr12	87413368	87413568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24289.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	40.38	28.93	59.9	51.48	49.5	53.31	68.1	55.09	61.76	77.32	102.0	42.6
Merged-chr8-61517930-3	chr8	61517828	61518028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	30194.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	13.73	11.32	20.54	23.33	85.91	84.35	97.33	101.78	69.43	50.21	99.49	37.91
Merged-chr3-127498362-1	chr3	127498262	127498462	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	753.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.21	1.76	3.42	3.62	1.23	2.82	2.33	1.68	21.64	14.06	23.11	18.8
Merged-chr14-46999871-3	chr14	46999766	46999966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-1474.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	30.28	27.17	38.22	43.44	38.46	37.0	27.57	49.68	40.32	20.59	26.63	19.74
Merged-chr6-38918938-3	chr6	38918819	38919019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011539)	promoter-TSS (NM_011539)	-67.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	48.46	39.24	34.8	56.71	47.05	59.89	35.54	53.27	52.12	76.82	74.87	53.26
Merged-chr7-128739713-3	chr7	128739613	128739813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	716.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	25.84	32.7	35.37	35.39	42.14	47.98	28.23	38.92	38.75	41.17	54.27	16.29
Merged-chr14-62808838-3	chr14	62808740	62808940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045503, intron 2 of 6)	LTR16A|LTR|ERVL	-28850.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	32.3	24.65	62.18	32.18	33.14	36.06	24.58	53.02	27.93	21.09	49.24	18.17
Merged-chr6-32512107-3	chr6	32511992	32512192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	951.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	66.22	40.24	55.33	49.87	62.59	62.71	29.23	50.16	43.86	42.18	55.78	29.13
Merged-chr6-87743457-3	chr6	87743360	87743560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12591.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	53.3	31.94	25.67	15.28	31.91	49.86	13.95	31.74	48.58	24.1	35.17	15.98
Merged-chr8-45415189-3	chr8	45415117	45415317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4598.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	36.34	47.04	50.2	74.41	40.09	26.65	32.88	54.7	54.68	45.69	59.29	26.0
Merged-chr6-124813710-3	chr6	124813602	124813802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	594.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	27.05	24.65	39.93	19.31	36.0	39.82	17.27	41.55	43.07	26.61	78.39	33.83
Merged-chr7-80802823-1	chr7	80802723	80802923	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	508.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	22.21	16.35	26.81	33.38	32.73	46.41	30.56	22.32	41.7	44.19	54.27	27.57
Merged-chr12-105685338-3	chr12	105685239	105685439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	-13.0	NM_178613	66787.0	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	84.39	57.6	50.77	46.66	73.64	99.4	48.83	78.17	124.11	156.15	119.59	76.44
Merged-chr2-68242262-3	chr2	68242189	68242389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137617.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	22.21	17.86	55.9	15.69	44.18	49.54	35.87	39.7	31.67	33.14	37.69	17.54
Merged-chr8-117322131-3	chr8	117322001	117322201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27069.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	18.98	18.36	25.67	30.16	27.0	26.34	28.23	42.42	37.96	33.14	54.27	37.59
Merged-chr5-109866618-3	chr5	109866513	109866713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32471.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	98.93	115.95	136.34	138.36	135.41	134.84	153.13	134.24	130.01	127.53	212.55	101.81
Merged-chr2-91650101-3	chr2	91649986	91650186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	-32.0	NR_027372	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	81.16	67.91	88.99	70.79	107.19	106.93	59.79	90.45	125.68	126.53	117.58	78.94
Merged-chr4-19869720-3	chr4	19869644	19869844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	51017.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	22.21	23.14	34.23	25.34	36.82	52.99	58.13	79.54	31.86	31.13	26.13	26.94
Merged-chr3-14578665-3	chr3	14578581	14578781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007892)	promoter-TSS (NM_007892)	10.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	199.48	175.31	187.11	203.51	151.78	194.42	256.44	190.35	175.84	209.88	226.62	114.03
Merged-chr6-124745642-3	chr6	124745542	124745742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007881, exon 6 of 10)	exon (NM_007881, exon 6 of 10)	-4563.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	152.23	147.4	160.3	141.17	154.64	187.52	96.0	130.54	170.92	165.19	163.31	103.38
Merged-chr11-50174789-3	chr11	50174709	50174909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026543)	promoter-TSS (NM_026543)	-42.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	96.91	87.53	92.41	71.99	125.19	139.85	82.71	107.78	119.39	100.92	167.83	62.97
Merged-chr2-132006717-3	chr2	132006611	132006811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	23277.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	122.75	119.22	158.02	157.66	159.14	165.88	136.52	155.52	159.71	159.67	202.0	113.09
Merged-chr18-33213495-3	chr18	33213384	33213584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347624, intron 1 of 5)	intron (NM_001347624, intron 1 of 5)	378.0	NM_133774	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	22.21	22.64	33.09	21.72	24.96	24.15	21.59	21.36	28.52	32.64	29.65	12.22
Merged-chr6-52842761-3	chr6	52842661	52842861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 2 of 4)	MTC|LTR|ERVL-MaLR	66859.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	65.82	35.72	59.9	90.49	56.05	54.88	39.2	87.56	50.35	69.79	80.9	39.47
Merged-chr19-5718207-1	chr19	5718107	5718307	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001114597, exon 9 of 19)	exon (NM_001114597, exon 9 of 19)	8110.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.4	0.0	0.0	0.0	0.0	0.31	0.0	0.0	21.64	8.03	10.05	9.71
Merged-chr17-17634246-3	chr17	17634149	17634349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9760.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	71.88	73.95	73.02	63.15	68.32	80.9	39.86	80.52	134.53	89.37	126.63	83.33
Merged-chr1-34389369-3	chr1	34389255	34389455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43844.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	45.23	43.51	49.06	57.51	58.09	54.56	34.55	46.49	87.92	77.32	96.48	46.05
Merged-chr7-29492079-3	chr7	29491977	29492177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	L1MC4|LINE|L1	13383.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	74.3	79.23	88.42	87.68	77.73	87.49	62.78	95.5	114.67	112.97	108.03	71.74
Merged-chr11-86683898-3	chr11	86683755	86683955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-128.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	91.66	94.83	106.68	79.64	94.5	130.76	47.17	70.04	110.54	129.54	100.5	57.33
Merged-chr1-105991389-4	chr1	105991319	105991519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001122676, exon 1 of 14)	exon (NM_001122676, exon 1 of 14)	1013.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	41.19	32.95	14.83	30.57	24.55	31.98	50.82	33.59	28.72	36.15	53.77	39.78
Merged-chr1-171388533-3	chr1	171388410	171388610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	-450.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	41.19	47.54	46.78	33.78	46.23	62.71	22.26	37.63	55.66	69.79	42.21	23.18
Merged-chr16-85114097-3	chr16	85114000	85114200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	59607.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	64.2	38.23	56.48	70.38	82.64	84.35	76.4	94.57	73.76	75.82	125.62	57.33
Merged-chr5-115631879-3	chr5	115631776	115631976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	-60.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	54.51	46.28	60.47	34.19	51.14	80.9	40.19	46.07	85.17	77.32	83.41	55.13
Merged-chr16-31290976-3	chr16	31290902	31291102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15725.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	29.48	11.82	20.54	20.51	34.36	46.41	24.25	35.92	38.55	43.68	28.14	22.56
Merged-chr1-177737667-3	chr1	177737560	177737760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027077, intron 2 of 5)	intron (NM_027077, intron 2 of 5)	7846.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	53.3	34.46	33.66	40.22	13.91	16.62	17.94	23.24	21.83	18.08	29.14	14.1
Merged-chr1-95666358-3	chr1	95666276	95666476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1218.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	27.05	13.83	30.23	21.72	34.77	32.3	17.27	35.66	22.03	17.07	35.17	26.31
Merged-chr13-94296116-3	chr13	94296017	94296217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10286.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	20.59	20.37	24.53	32.58	27.41	36.69	28.23	43.09	27.93	21.09	39.7	30.39
Merged-chr5-140765017-3	chr5	140764908	140765108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	PB1D10|SINE|Alu	40881.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	56.13	33.96	65.03	59.93	67.91	62.09	49.49	87.0	47.21	48.7	71.86	38.85
Merged-chr17-50438667-1	chr17	50438567	50438767	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.62	2.52	3.99	6.44	2.45	0.63	8.97	16.04	3.54	3.51	2.51	1.88
Merged-chr18-34557651-1	chr18	34557551	34557751	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	15323.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0.81	0.0	1.14	0.0	0.0	0.0	0.0	0.0	32.65	13.05	24.62	17.86
Merged-chr2-129595790-1	chr2	129595690	129595890	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	328.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	58.55	58.35	91.27	68.78	65.05	61.77	69.42	61.82	73.36	109.46	88.94	67.67
Merged-chr19-10979992-3	chr19	10979914	10980114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-5344.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	61.78	56.85	35.37	46.25	65.87	67.42	31.56	50.97	53.89	44.19	45.22	34.15
Merged-chr7-95698231-1	chr7	95698131	95698331	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-473013.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.81	0.0	2.28	6.84	2.45	5.02	6.64	11.16	0.0	1.51	1.0	0.94
Merged-chr5-121943759-2	chr5	121943655	121943855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	94758.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	28.27	21.63	28.52	22.12	32.32	46.1	24.25	40.21	6.69	17.07	9.04	4.39
Merged-chr4-62662281-3	chr4	62662177	62662377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11697.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	18.57	27.92	26.24	25.34	30.68	38.26	10.96	23.07	42.09	37.66	43.21	20.05
Merged-chr7-45053345-3	chr7	45053230	45053430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-449.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	46.84	32.2	57.05	30.97	54.0	57.07	22.92	31.74	63.92	69.79	54.27	44.8
Merged-chr9-74976121-3	chr9	74976029	74976229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153584)	promoter-TSS (NM_153584)	18.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	45.63	60.37	80.43	81.24	83.46	80.9	68.76	101.64	86.54	85.86	149.24	63.59
Merged-chr5-139364770-3	chr5	139364649	139364849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4996.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	96.91	45.78	85.0	112.21	124.37	71.18	110.28	116.94	85.56	76.32	110.55	87.4
Merged-chr3-148895919-1	chr3	148895819	148896019	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	58716.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.23	0.5	1.14	3.62	2.45	3.45	8.64	9.7	0.39	2.51	1.0	0.94
Merged-chr16-32419670-3	chr16	32419567	32419767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025329)	promoter-TSS (NM_025329)	-35.0	NR_154990	66061.0	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	165.96	134.32	132.35	167.32	145.64	175.6	109.95	127.6	163.45	154.65	189.94	114.97
Merged-chr12-85710787-3	chr12	85710677	85710877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24057.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	158.29	156.7	176.84	122.67	207.42	266.22	130.21	158.97	191.97	190.8	170.34	97.74
Merged-chr2-167717443-3	chr2	167717371	167717571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26294.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	26.25	33.45	39.93	34.99	56.87	57.07	45.84	59.61	42.09	28.62	58.29	36.34
Merged-chr1-153425126-3	chr1	153425027	153425227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033162)	promoter-TSS (NM_001033162)	-82.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	20.59	26.41	6.28	30.57	45.82	29.16	23.58	25.85	37.96	40.67	36.68	29.45
Merged-chr7-44835617-3	chr7	44835518	44835718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-670.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	17.77	53.07	15.97	9.65	36.41	86.23	26.24	4.99	36.19	39.16	22.11	5.95
Merged-chr14-120478262-3	chr14	120478169	120478369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-192.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	163.94	191.66	216.77	183.81	219.28	231.42	178.04	196.63	292.28	249.04	349.23	162.27
Merged-chr19-53284630-3	chr19	53284525	53284725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25881.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	22.21	17.1	31.95	14.88	36.41	39.2	42.52	43.65	59.79	56.24	86.43	44.48
Merged-chr17-72918281-3	chr17	72918193	72918393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-12.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	141.73	141.86	134.06	136.35	115.37	142.36	88.03	111.22	142.8	117.99	142.71	101.19
Merged-chr13-100015679-3	chr13	100015557	100015757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-18.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	102.97	95.58	167.71	169.73	131.73	119.78	85.04	156.0	120.37	131.55	206.02	73.3
Merged-chr1-143988906-3	chr1	143988801	143989001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15248.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	27.46	15.59	54.76	22.93	34.77	24.46	36.54	63.9	28.32	23.6	33.67	25.37
Merged-chr1-138237437-3	chr1	138237347	138237547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-36291.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	30.28	16.6	16.54	28.56	29.46	29.48	38.2	35.24	34.62	33.64	30.15	15.35
Merged-chr1-97770070-3	chr1	97769979	97770179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	13.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	88.43	69.17	86.71	99.75	110.87	107.56	75.73	139.21	140.24	95.4	211.55	69.86
Merged-chr4-129335450-3	chr4	129335369	129335569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-99.0	NM_009030	19646.0	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4, chromatin remodeling factor	protein-coding	150.21	154.69	128.35	160.48	177.14	229.85	103.31	130.82	215.57	254.57	197.98	136.58
Merged-chr9-116156791-2	chr9	116156676	116156876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	18587.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	87.22	38.99	86.71	94.92	77.73	73.69	77.73	79.21	3.74	3.51	3.52	3.76
Merged-chr1-157554454-1	chr1	157554354	157554554	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159986, intron 14 of 25)	(CTAGGG)n|Simple_repeat|Simple_repeat	28284.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	2.42	6.04	2.85	1.21	4.5	5.96	9.3	3.53	6.29	2.01	4.02	4.39
Merged-chr15-88515262-3	chr15	88515153	88515353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-85049.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	55.32	41.5	78.15	84.86	50.32	63.34	58.79	91.37	85.76	57.74	108.03	73.93
Merged-chr3-79239380-3	chr3	79239287	79239487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	26468.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	51.69	30.94	61.04	60.33	31.91	28.22	29.9	38.38	58.22	42.68	52.26	28.51
Merged-chr13-52575676-3	chr13	52575576	52575776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2451.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	72.28	36.22	42.78	57.51	45.0	60.21	51.49	49.46	54.48	59.25	72.86	36.34
Merged-chr3-116189553-3	chr3	116189434	116189634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59846.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	50.88	41.25	60.47	50.68	64.64	80.27	59.46	82.4	72.97	64.27	68.84	60.46
Merged-chr7-126791998-2	chr7	126791921	126792121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019674, intron 2 of 8)	CpG	343.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	28.27	23.9	8.56	17.29	16.77	17.87	14.62	15.31	22.62	31.63	26.13	16.6
Merged-chr1-87214342-3	chr1	87214263	87214463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001039169, exon 1 of 7)	5' UTR (NM_001039169, exon 1 of 7)	424.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	42.8	29.68	30.8	30.16	47.05	43.59	39.86	37.04	41.89	44.19	48.74	28.51
Merged-chr5-92467199-3	chr5	92467072	92467272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	8615.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	35.53	31.44	49.06	40.62	51.14	60.83	57.13	48.87	55.86	32.64	49.24	26.0
Merged-chr19-34500956-3	chr19	34500868	34501068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 7 of 9)	RLTR11A|LTR|ERVK	-25833.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	36.75	23.9	21.11	27.35	45.82	73.06	28.57	39.45	48.98	43.68	32.66	26.63
Merged-chr12-51865192-3	chr12	51865101	51865301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35665.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	25.84	24.9	18.83	22.12	72.0	60.52	50.49	87.93	49.57	52.22	53.26	32.58
Merged-chr17-13867621-3	chr17	13867518	13867718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-80755.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	60.17	51.81	54.76	80.84	88.78	58.01	91.68	99.25	50.35	49.71	89.44	43.23
Merged-chr8-109565759-3	chr8	109565636	109565836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	125.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	135.68	146.14	155.16	150.82	137.46	198.81	134.86	145.91	218.52	189.8	266.82	98.99
Merged-chr14-121877587-3	chr14	121877475	121877675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130999, intron 1 of 1)	intron (NR_130999, intron 1 of 1)	695.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	43.61	40.5	51.34	10.46	40.91	88.74	23.92	26.92	52.52	52.22	37.18	18.17
Merged-chr1-151500976-3	chr1	151500879	151501079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011277)	promoter-TSS (NM_011277)	12.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	132.44	86.53	109.53	88.08	139.1	147.69	98.32	138.25	121.36	175.74	166.82	86.15
Merged-chr16-20498847-3	chr16	20498744	20498944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172265)	promoter-TSS (NM_172265)	27.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	52.49	54.08	42.78	49.47	52.77	43.59	24.25	43.4	45.43	50.71	52.26	29.76
Merged-chr15-12321427-3	chr15	12321328	12321528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-68.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	85.2	89.29	65.6	76.82	87.96	121.98	66.1	114.36	137.09	121.51	176.87	94.29
Merged-chr19-46075903-3	chr19	46075820	46076020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	73.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	146.58	153.68	134.06	108.59	184.1	199.12	81.71	116.47	202.79	206.87	173.86	100.87
Merged-chr2-25196004-3	chr2	25195907	25196107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146115, intron 1 of 1)	intron (NM_146115, intron 1 of 1)	806.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	113.06	105.64	104.39	50.27	123.55	127.94	89.02	87.31	127.26	140.59	152.75	72.05
Merged-chr6-47175045-3	chr6	47174963	47175163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-69333.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	21.4	25.66	29.09	37.0	38.86	26.65	29.23	12.9	27.73	32.13	23.11	28.51
Merged-chr2-84511722-3	chr2	84511590	84511790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4817.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	24.63	44.27	54.19	46.66	22.5	25.09	21.59	13.99	61.76	58.75	64.32	29.45
Merged-chr7-100434371-3	chr7	100434259	100434459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38632.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	29.88	37.98	26.81	16.89	34.77	37.94	24.58	20.3	36.78	39.67	28.14	17.54
Merged-chr7-29005987-1	chr7	29005887	29006087	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 101 of 105)	RLTR15|LTR|ERVK	23133.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	8.08	0.5	2.28	1.21	0.41	1.25	2.99	2.02	2.56	0.5	0.5	1.25
Merged-chr16-32401772-3	chr16	32401678	32401878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	1272.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	56.13	33.45	43.35	63.95	58.09	56.76	48.16	62.3	69.82	55.23	88.94	34.46
Merged-chr5-86065304-1	chr5	86065204	86065404	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001345903, intron 1 of 19)	CpG	279.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	29.07	19.12	21.68	23.33	36.41	36.06	22.59	37.68	40.12	47.2	71.86	35.09
Merged-chr15-6555707-3	chr15	6555589	6555789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24158.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	53.7	47.04	39.36	51.08	60.96	87.8	61.78	66.25	77.89	81.34	61.3	33.52
Merged-chr12-73908476-3	chr12	73908372	73908572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010431, intron 1 of 14)	CpG	605.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	23.02	27.92	23.39	22.12	22.91	22.89	33.55	25.91	39.53	30.63	50.75	19.74
Merged-chr13-5845837-3	chr13	5845731	5845931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12261.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	37.96	26.91	34.8	29.36	68.73	64.28	31.56	76.74	64.32	56.24	77.38	33.52
Merged-chr13-5862346-6	chr13	5862205	5862405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	816.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	21.4	15.85	20.54	10.86	22.09	26.65	13.95	10.01	13.18	37.16	16.58	15.66
Merged-chr17-78418145-3	chr17	78418043	78418243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285946)	promoter-TSS (NM_001285946)	9.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	52.09	40.75	53.05	49.47	56.87	67.42	58.79	66.14	98.34	103.94	115.57	61.4
Merged-chr11-120673188-4	chr11	120673183	120673383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026877, intron 1 of 15)	CpG	310.0	NM_026877	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	53.3	56.59	45.07	45.05	65.87	63.34	54.81	54.5	88.71	95.4	78.39	51.38
Merged-chr9-107724369-3	chr9	107724291	107724491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13916.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	23.82	18.61	29.09	26.14	37.64	24.46	22.59	37.04	45.63	24.6	49.75	21.93
Merged-chr16-24777266-3	chr16	24777148	24777348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	55393.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	34.73	21.38	53.05	39.01	41.73	63.97	35.21	47.83	70.81	45.19	61.3	35.4
Merged-chr5-45520328-3	chr5	45520239	45520439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025895, exon 1 of 4)	exon (NM_025895, exon 1 of 4)	110.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	54.11	65.4	62.18	81.65	67.5	75.57	72.41	79.68	67.46	76.32	82.91	44.8
Merged-chr8-70614622-3	chr8	70614513	70614713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2231.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	30.69	23.64	71.31	55.5	44.18	29.79	35.21	61.68	39.93	28.62	54.77	37.59
Merged-chr7-6410258-3	chr7	6410168	6410368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4907.0	NM_001134752	100042450.0	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	35.94	16.6	17.68	27.75	28.23	34.49	29.23	37.82	38.16	36.15	40.7	22.56
Merged-chr1-152386629-3	chr1	152386528	152386728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025677)	promoter-TSS (NM_025677)	54.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	20.19	20.63	21.68	14.88	23.32	24.77	11.96	22.23	27.34	32.13	36.68	17.23
Merged-chr9-53405287-3	chr9	53405198	53405398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029247)	promoter-TSS (NM_029247)	12.0	NM_029247	75311.0	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	21.4	12.58	20.54	37.4	41.32	37.0	15.61	38.94	74.94	65.78	72.36	49.18
Merged-chr16-14125469-1	chr16	14125369	14125569	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	33805.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.65	3.02	9.7	6.03	11.86	2.82	2.33	8.64	3.34	3.01	9.55	4.07
Merged-chr7-143832444-3	chr7	143832314	143832514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007856, intron 2 of 8)	intron (NM_007856, intron 2 of 8)	9247.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	24.63	20.63	25.67	8.45	29.46	35.43	17.61	25.54	24.98	21.59	31.15	16.6
Merged-chr5-32196198-3	chr5	32196088	32196288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-36520.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	49.67	33.45	63.32	35.8	64.64	72.12	73.41	68.05	99.72	97.41	113.56	79.57
Merged-chr18-20746356-3	chr18	20746257	20746457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019737)	promoter-TSS (NM_019737)	47.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	50.07	41.25	51.91	56.31	63.82	80.27	70.09	85.4	70.41	65.27	121.6	52.0
Merged-chr4-58546309-3	chr4	58546259	58546459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6934.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	13.33	14.59	17.11	20.51	11.45	12.23	19.27	27.73	23.21	15.06	30.65	24.75
Merged-chr2-35507316-3	chr2	35507221	35507421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-45872.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	43.21	27.92	67.31	48.26	41.32	21.64	35.54	44.89	38.16	28.62	45.73	20.05
Merged-chr9-123113062-3	chr9	123112958	123113158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	147.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	60.57	53.32	60.47	58.72	29.46	62.09	72.75	35.92	75.13	90.88	96.48	59.83
Merged-chr13-59823144-3	chr13	59823035	59823235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153538)	promoter-TSS (NM_153538)	12.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	143.35	166.76	162.01	179.78	127.64	195.36	113.6	133.6	221.08	259.09	292.44	164.78
Merged-chr1-152526805-1	chr1	152526705	152526905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 15 of 17)	B4A|SINE|B4	98412.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.67	13.33	16.54	13.27	3.68	11.6	7.64	9.06	11.41	14.06	6.53	13.47
Merged-chr14-52197361-3	chr14	52197328	52197528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033618)	promoter-TSS (NM_033618)	-189.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	40.38	50.81	26.81	43.84	35.59	53.62	47.83	41.55	47.01	51.72	49.24	38.22
Merged-chr1-43912466-3	chr1	43912356	43912556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21538.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	31.09	24.4	15.97	37.81	53.18	56.76	38.86	37.63	35.99	38.16	55.78	27.57
Merged-chrX-48140605-3	chrX	48140501	48140701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5835.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	25.04	16.35	35.37	21.32	30.68	14.74	11.96	18.56	18.49	23.1	24.12	17.23
Merged-chr1-128102758-3	chr1	128102646	128102846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	255.0	NM_001357573	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	84.8	86.02	104.96	111.01	80.59	104.11	57.8	109.85	142.21	164.69	131.15	114.03
Merged-chr13-67306455-3	chr13	67306359	67306559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003666)	promoter-TSS (NM_001003666)	-47.0	NM_001003666	431706.0	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	27.86	27.42	32.52	32.18	38.46	24.77	28.23	29.41	39.73	43.68	68.84	32.27
Merged-chr9-13304225-3	chr9	13304141	13304341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57285.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	47.24	46.78	65.6	83.66	57.68	51.43	45.18	90.03	49.96	43.68	59.29	46.68
Merged-chr7-127777058-3	chr7	127776951	127777151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-338.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	54.51	43.26	27.38	38.61	50.32	57.07	28.57	46.88	64.91	70.8	70.35	39.16
Merged-chr16-58509794-3	chr16	58509711	58509911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13615.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	49.26	38.74	45.07	51.08	73.64	72.75	35.54	60.25	84.58	76.32	77.38	56.7
Merged-chr11-120598517-3	chr11	120598420	120598620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011568)	promoter-TSS (NM_011568)	-12.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	168.79	168.27	138.05	123.88	147.69	219.5	121.24	100.35	181.94	206.87	195.47	114.34
Merged-chr1-144249151-3	chr1	144249066	144249266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015811)	promoter-TSS (NM_015811)	-62.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	146.58	105.14	118.08	133.53	154.64	142.99	116.92	158.36	137.09	129.04	168.83	104.63
Merged-chr11-83658975-3	chr11	83658885	83659085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3599.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	38.36	36.22	49.06	30.57	48.27	47.98	26.57	35.36	32.06	29.12	29.14	23.49
Merged-chr7-92741571-3	chr7	92741482	92741682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	-123.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	236.22	213.55	244.73	232.47	330.15	332.07	220.23	348.06	308.6	263.61	431.13	181.69
Merged-chrUn_JH584304-9526-1	chrUn_JH584304	9426	9626	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	50163.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	45.63	61.76	66.33	36.97
Merged-chr9-53610386-3	chr9	53610285	53610485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144784)	promoter-TSS (NM_144784)	-35.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	103.78	69.17	112.95	102.56	99.0	120.1	73.74	94.63	120.37	108.96	174.86	87.71
Merged-chr2-119478055-3	chr2	119478034	119478234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026574)	promoter-TSS (NM_026574)	-505.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	54.51	69.67	42.78	45.05	54.82	82.78	41.19	29.89	61.56	61.76	37.18	36.65
Merged-chr1-16688826-3	chr1	16688708	16688908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	352.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	13.33	20.63	9.7	20.11	22.91	20.38	15.94	23.55	48.58	48.2	46.73	29.13
Merged-chr10-94486154-1	chr10	94486054	94486254	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MIR3|SINE|MIR	-28703.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	1.21	4.02	3.42	2.41	5.73	2.2	10.3	13.32	1.38	4.52	8.04	11.28
Merged-chr17-45752877-3	chr17	45752786	45752986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	18380.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	142.54	138.59	260.7	207.54	229.51	285.98	282.01	280.96	209.87	184.27	321.09	147.24
Merged-chr12-4237188-3	chr12	4237102	4237302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3175.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	55.72	53.58	57.62	40.22	45.82	74.94	36.21	61.68	45.24	51.72	73.36	32.89
Merged-chr3-31095021-3	chr3	31094933	31095133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-25.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	92.87	130.54	88.99	94.11	113.73	169.96	110.95	101.97	171.12	235.49	204.01	77.06
Merged-chr8-64951090-3	chr8	64950992	64951192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163747, intron 1 of 4)	intron (NM_001163747, intron 1 of 4)	3907.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	18.98	18.36	18.25	25.74	18.41	26.97	23.58	30.45	18.1	28.12	34.17	27.25
Merged-chr10-39443323-3	chr10	39443238	39443438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	MLT1B|LTR|ERVL-MaLR	73539.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	67.43	40.24	78.15	98.94	65.87	72.75	96.99	107.86	87.72	42.18	120.09	51.06
Merged-chr17-71834801-2	chr17	71834696	71834896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52849.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	8.08	13.08	14.26	16.09	23.73	13.17	14.28	25.96	0.0	0.0	0.5	0.0
Merged-chr6-134799526-1	chr6	134799426	134799626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_151455, intron 1 of 1)	intron (NR_151455, intron 1 of 1)	3876.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	14.94	23.39	29.66	17.7	3.68	3.14	0.66	2.1	0.79	1.0	1.0	0.63
Merged-chr16-30059463-3	chr16	30059326	30059526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5931.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	21.8	25.66	36.51	32.98	33.14	27.91	31.56	44.41	37.57	38.16	55.27	34.15
Merged-chr17-87974937-3	chr17	87974831	87975031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-119.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	161.92	170.28	160.3	168.12	167.73	225.77	136.52	187.09	218.32	190.3	237.17	119.67
Merged-chr9-65681097-3	chr9	65680993	65681193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	4545.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	30.28	26.41	24.53	32.58	49.5	55.5	30.23	42.2	27.93	30.63	22.11	23.18
Merged-chr1-171637330-3	chr1	171637285	171637485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144539, exon 6 of 8)	exon (NM_144539, exon 6 of 8)	4515.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	28.27	34.21	38.79	32.58	32.73	37.0	40.86	31.15	47.01	40.67	61.81	36.03
Merged-chr17-47054799-3	chr17	47054670	47054870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44238.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	19.38	15.09	28.52	27.35	23.73	15.99	23.92	34.63	21.83	23.6	23.11	23.49
Merged-chr2-93849921-3	chr2	93849823	93850023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	20.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	100.55	104.64	108.96	111.81	100.23	104.11	96.33	118.68	92.25	83.85	140.19	63.28
Merged-chr3-61396998-3	chr3	61396903	61397103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32496.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	24.63	15.09	20.54	27.35	45.41	44.53	31.56	55.71	61.76	49.21	49.24	33.21
Merged-chr12-102354656-3	chr12	102354547	102354747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	71006.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	33.92	19.12	33.66	30.57	21.27	30.73	40.86	44.1	38.75	29.62	73.86	22.87
Merged-chr18-3383080-3	chr18	3382956	3383156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029402)	promoter-TSS (NM_029402)	86.0	NM_001360829	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	50.07	81.5	77.01	90.09	43.77	76.2	99.98	80.38	46.62	58.24	62.31	43.54
Merged-chr2-29678740-3	chr2	29678632	29678832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	59012.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	46.84	41.25	40.5	32.18	28.64	49.23	26.57	22.29	45.63	27.11	35.68	24.43
Merged-chr4-9676441-3	chr4	9676337	9676537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7093.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	95.7	81.5	101.54	104.97	105.55	104.73	87.69	112.85	96.18	100.42	118.08	85.52
Merged-chr12-85473511-3	chr12	85473365	85473565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-425.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	74.7	57.1	85.57	74.41	87.96	76.51	61.78	68.55	110.34	102.93	160.29	60.15
Merged-chr8-34146752-3	chr8	34146659	34146859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-20.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	49.67	62.63	57.05	50.27	76.91	74.94	53.81	62.27	83.4	67.78	105.02	38.53
Merged-chr7-43643317-3	chr7	43643218	43643418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	8579.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	79.55	96.84	119.23	66.77	82.64	128.56	88.03	59.66	132.37	148.12	142.2	70.8
Merged-chr14-120910975-3	chr14	120910876	120911076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-218.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	234.2	272.15	203.08	227.24	274.1	317.65	252.45	293.44	350.5	321.85	438.16	171.98
Merged-chr19-40693502-3	chr19	40693406	40693606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	33736.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	50.88	42.26	61.04	43.84	45.41	50.8	44.18	56.41	44.65	58.75	59.8	26.94
Merged-chr2-75731281-3	chr2	75731209	75731409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26646.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	70.26	81.75	99.26	66.36	102.28	128.56	55.8	72.87	109.56	119.0	117.08	70.48
Merged-chr18-5134354-3	chr18	5134244	5134444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31387.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	91.26	70.18	117.51	102.96	129.69	107.87	136.85	170.38	92.25	110.46	115.07	79.26
Merged-chr5-129846962-3	chr5	129846869	129847069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026445)	promoter-TSS (NM_026445)	-21.0	NM_026445	67902.0	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	41.99	25.66	45.64	29.76	36.0	31.67	31.22	46.99	115.65	76.32	114.57	64.22
Merged-chr16-78267682-3	chr16	78267587	78267787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12233.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	18.17	17.36	19.4	26.95	79.78	38.88	68.76	82.6	76.12	82.85	65.32	53.26
Merged-chr6-34029476-3	chr6	34029407	34029607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028886)	promoter-TSS (NM_028886)	59.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	26.65	34.46	28.52	23.73	30.68	33.55	25.91	23.47	24.39	23.1	15.07	18.17
Merged-chr2-45246788-3	chr2	45246676	45246876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129334.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	58.95	51.31	79.86	81.65	67.91	55.19	84.37	86.52	66.48	51.72	68.34	48.24
Merged-chr11-3136103-1	chr11	3136003	3136203	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 24 of 32)	intron (NM_030207, intron 24 of 32)	12082.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	11.71	14.09	8.56	8.45	9.82	10.98	9.97	13.43	0.0	1.0	3.52	1.25
Merged-chr18-69586208-3	chr18	69586113	69586313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240053.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	29.48	22.89	24.53	42.63	37.23	18.5	15.94	40.57	35.6	35.65	54.27	24.75
Merged-chrX-52988119-3	chrX	52988001	52988201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013556)	promoter-TSS (NM_013556)	23.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	56.53	68.16	59.9	73.2	73.23	71.18	46.5	78.06	76.91	68.79	102.51	48.87
Merged-chr4-120032559-3	chr4	120032496	120032696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-128610.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	25.44	44.02	43.35	39.82	50.73	124.17	105.63	54.79	47.8	47.7	65.32	29.45
Merged-chr11-58904227-3	chr11	58904105	58904305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	20.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	91.26	100.11	103.25	78.83	102.28	140.79	102.31	110.86	114.47	103.94	125.12	61.09
Merged-chr14-70212809-3	chr14	70212724	70212924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5153.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	60.17	57.35	84.43	57.51	82.23	82.16	42.52	68.66	86.74	86.86	97.98	44.8
Merged-chr15-64102114-2	chr15	64102003	64102203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-41655.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	21.0	22.13	32.52	21.32	34.77	37.94	31.56	37.23	4.33	4.02	5.53	4.7
Merged-chr7-35098973-3	chr7	35098885	35099085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20308.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	41.59	34.96	36.51	53.09	65.05	40.76	60.12	80.16	23.6	45.69	41.2	46.68
Merged-chr2-102752014-3	chr2	102751913	102752113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-5253.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	64.2	38.48	41.64	50.27	51.55	56.13	35.87	57.76	62.94	41.17	82.91	31.33
Merged-chr19-60889774-3	chr19	60889672	60889872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	23.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	33.52	38.48	26.24	27.75	50.73	40.45	26.24	35.64	19.08	9.54	23.62	21.3
Merged-chr6-125271701-3	chr6	125271608	125271808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6183.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	117.5	93.32	108.39	109.0	117.0	147.07	79.72	122.16	133.55	100.92	162.8	93.04
Merged-chr19-34248785-3	chr19	34248680	34248880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007392, intron 3 of 8)	intron (NM_007392, intron 3 of 8)	6593.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	29.07	21.13	31.95	29.36	29.05	36.37	25.58	40.51	59.99	78.33	46.23	45.11
Merged-chr8-122431675-3	chr8	122431556	122431756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	1284.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	14.54	9.31	18.83	5.63	25.36	25.71	16.94	14.58	32.65	23.6	34.67	19.42
Merged-chr10-88708813-3	chr10	88708699	88708899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22302.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	50.07	51.06	36.51	37.0	78.14	86.86	48.16	39.31	87.33	70.29	63.82	27.57
Merged-chr15-25910272-3	chr15	25910161	25910361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23291.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	43.61	30.94	54.76	53.09	67.09	38.26	48.83	76.54	36.78	45.69	73.36	32.27
Merged-chr13-36315067-3	chr13	36314970	36315170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	197427.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	34.73	30.94	52.48	37.0	32.73	50.8	49.83	47.41	60.38	62.76	101.5	27.57
Merged-chr18-80691639-3	chr18	80691554	80691754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16519.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	39.17	33.2	44.5	22.52	42.14	39.82	25.58	45.53	47.21	26.61	55.78	20.36
Merged-chr7-140137655-3	chr7	140137519	140137719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199301)	promoter-TSS (NM_199301)	55.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	58.95	56.59	63.32	75.61	80.59	76.51	82.71	87.11	111.52	107.45	134.67	63.59
Merged-chr17-86445116-3	chr17	86445021	86445221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-157943.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	114.68	148.9	189.39	158.06	201.69	188.14	135.53	175.91	61.76	65.27	96.48	52.0
Merged-chr16-45628654-3	chr16	45628556	45628756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 5 of 5)	MTE2a|LTR|ERVL-MaLR	18216.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	27.05	25.66	20.54	25.34	25.77	30.1	15.28	24.25	52.91	45.19	76.88	24.43
Merged-chr2-167799811-3	chr2	167799707	167799907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108630.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	17.36	19.87	31.95	26.55	31.5	28.22	20.59	29.89	35.01	24.1	49.24	27.88
Merged-chr5-36581999-3	chr5	36581898	36582098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	CpG	399.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	232.18	228.64	245.3	237.3	279.42	312.63	217.9	204.28	306.83	321.85	399.47	183.57
Merged-chr9-50774117-3	chr9	50774023	50774223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1102.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	33.11	30.43	36.51	40.62	38.86	78.71	18.27	45.9	45.43	46.19	59.29	43.86
Merged-chr10-10472448-3	chr10	10472336	10472536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127353)	promoter-TSS (NM_001127353)	-122.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	54.11	45.53	77.58	77.22	90.82	76.51	68.43	100.79	102.67	83.35	147.23	85.21
Merged-chr12-112629548-3	chr12	112629445	112629645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	9498.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	107.41	115.2	135.2	99.75	212.32	263.71	203.95	239.13	237.01	238.5	261.79	163.84
Merged-chr5-107708457-3	chr5	107708355	107708555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4975.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	46.03	49.3	69.6	48.67	28.64	51.11	58.79	44.13	40.52	51.72	54.27	42.92
Merged-chr12-85941115-1	chr12	85941015	85941215	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	116165.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.5	3.42	0.8	2.45	1.88	8.64	7.04	0.0	0.0	3.52	1.25
Merged-chr7-27160039-3	chr7	27159916	27160116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357767, intron 2 of 4)	intron (NM_001357767, intron 2 of 4)	5712.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	29.07	23.9	33.09	24.13	33.14	47.04	29.9	42.76	42.68	22.59	56.28	17.23
Merged-chr13-107758488-3	chr13	107758373	107758573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71076.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	41.19	19.37	54.19	47.06	45.41	42.65	53.15	62.1	74.74	39.67	65.32	48.24
Merged-chr16-11909310-3	chr16	11909227	11909427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146067)	promoter-TSS (NM_146067)	96.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	29.07	35.21	30.23	34.59	37.23	42.02	51.82	32.27	21.64	39.67	41.71	42.29
Merged-chrX-159909692-1	chrX	159909592	159909792	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	intron (NM_001135728, intron 4 of 12)	-33001.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.85	2.52	3.42	6.44	5.73	1.88	9.97	14.86	4.72	3.51	9.04	12.22
Merged-chr1-191194248-3	chr1	191194157	191194357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10924.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	40.78	32.7	38.22	21.72	40.5	50.8	13.95	39.73	49.37	40.67	66.83	30.7
Merged-chr10-125213988-3	chr10	125213879	125214079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94837.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	18.17	18.11	25.67	32.98	25.36	17.25	20.26	42.36	30.29	17.07	32.66	19.11
Merged-chr16-70568804-1	chr16	70568704	70568904	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 15 of 15)	intron (NM_028803, intron 15 of 15)	-47621.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	6.86	6.54	10.27	5.63	4.09	4.08	10.63	8.58	3.93	3.01	10.05	5.33
Merged-chr11-5878321-3	chr11	5878221	5878421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361942)	promoter-TSS (NM_001361942)	-65.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	123.56	120.48	127.21	95.72	150.14	157.41	107.62	149.08	183.9	179.75	227.62	90.53
Merged-chr13-45109153-3	chr13	45109054	45109254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107058.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	124.77	119.98	156.31	160.08	144.82	171.52	127.22	142.65	132.96	128.04	147.23	97.43
Merged-chr16-92713995-3	chr16	92713900	92714100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-16671.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	21.8	15.85	33.09	32.98	38.46	32.93	27.57	54.08	30.29	30.13	49.24	31.01
Merged-chr11-23257464-3	chr11	23257366	23257566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1425.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	58.15	47.79	49.63	81.65	63.41	66.16	66.77	86.94	62.55	41.17	92.46	49.18
Merged-chr9-20492678-3	chr9	20492583	20492783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	63.0	NM_146221	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	36.34	54.83	45.64	59.93	51.96	52.68	60.12	55.21	53.5	46.19	58.29	38.22
Merged-chr6-38551337-3	chr6	38551228	38551428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-6.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	162.33	137.59	158.59	133.53	132.55	169.96	100.65	124.04	210.65	202.85	222.1	134.39
Merged-chr10-79767064-3	chr10	79766964	79767164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-112.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	132.85	104.64	131.78	131.52	141.55	157.41	134.2	134.41	159.51	169.71	204.01	111.52
Merged-chr15-73596643-3	chr15	73596553	73596753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168255)	promoter-TSS (NM_001168255)	-127.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	61.78	35.21	66.74	51.88	60.14	63.66	48.83	72.03	54.88	42.18	59.8	48.87
Merged-chr10-81106067-5	chr10	81106075	81106275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347144, exon 1 of 11)	exon (NM_001347144, exon 1 of 11)	260.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	36.34	51.06	53.05	26.55	41.32	55.19	36.87	34.57	55.07	40.17	48.74	41.98
Merged-chr9-21165226-3	chr9	21165109	21165309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	-505.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	47.24	44.77	31.95	29.76	52.37	35.12	30.23	48.65	71.0	65.27	72.86	48.56
Merged-chr8-36993577-3	chr8	36993459	36993659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039220)	promoter-TSS (NM_001039220)	-16.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	54.11	40.5	46.78	56.31	58.09	59.89	38.53	62.36	82.02	56.74	83.41	46.36
Merged-chr3-90509559-3	chr3	90509478	90509678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-80.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	100.55	83.51	85.0	80.04	100.23	128.25	82.05	74.61	113.88	143.6	112.56	80.82
Merged-chr7-84143302-3	chr7	84143198	84143398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	8595.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	13.73	13.33	29.66	24.13	15.14	14.11	11.29	24.03	23.8	23.6	35.17	22.56
Merged-chr1-127240148-3	chr1	127240031	127240231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	35145.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	30.28	19.37	30.23	22.93	44.18	37.63	19.93	54.53	55.86	40.67	38.19	25.06
Merged-chr18-60912005-3	chr18	60911895	60912095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038499)	promoter-TSS (NM_001038499)	-245.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	19.79	11.82	19.4	19.71	32.32	25.09	23.92	21.11	22.03	21.59	34.67	15.66
Merged-chr10-98915026-3	chr10	98914941	98915141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-111.0	NM_001359507	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	88.43	87.53	74.73	96.93	131.32	125.12	77.4	106.99	144.17	150.63	210.04	75.18
Merged-chr2-78049529-3	chr2	78049456	78049656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1621.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	18.17	30.18	25.67	28.56	36.0	58.32	47.5	45.95	43.86	63.77	60.8	33.52
Merged-chr1-182045375-3	chr1	182045288	182045488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25408.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	43.21	38.74	60.47	59.12	22.09	27.59	23.58	24.34	32.06	20.08	49.75	29.13
Merged-chr1-184535795-3	chr1	184535673	184535873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21918.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	41.99	67.41	71.31	42.63	55.64	75.57	62.45	55.37	44.84	57.74	64.82	28.51
Merged-chrX-96145140-3	chrX	96145050	96145250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 2 of 12)	intron (NM_010833, intron 2 of 12)	49105.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	47.65	34.46	51.91	53.09	30.68	36.37	33.55	50.52	30.68	40.67	39.19	25.06
Merged-chr10-111540180-3	chr10	111540069	111540269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33883.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	152.23	142.36	186.54	212.36	170.6	234.87	139.84	196.8	244.09	222.93	233.65	136.58
Merged-chr11-110980433-1	chr11	110980333	110980533	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	12400.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.42	2.52	8.56	8.45	16.77	13.8	18.27	29.58	7.08	6.53	14.57	5.95
Merged-chr7-102441726-3	chr7	102441621	102441821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	26.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	98.12	75.46	71.31	72.4	97.78	105.05	51.82	86.1	93.43	95.9	138.69	75.5
Merged-chr2-166472281-3	chr2	166472177	166472377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	24826.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	28.67	18.36	29.66	28.56	55.23	59.89	38.53	51.0	45.63	52.22	40.2	21.3
Merged-chr2-75792575-3	chr2	75792461	75792661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39616.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	62.59	66.15	79.86	67.97	72.0	80.27	56.47	71.38	97.36	95.9	124.62	73.3
Merged-chr11-109420242-3	chr11	109420123	109420323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5723.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	27.86	38.74	22.82	41.02	39.68	48.29	49.83	29.19	32.06	29.12	33.16	32.58
Merged-chr4-8690207-3	chr4	8690098	8690298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277149)	promoter-TSS (NM_001277149)	-208.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	37.15	27.92	23.39	29.76	34.36	32.93	19.6	24.03	33.44	22.59	43.72	16.29
Merged-chr17-70829377-3	chr17	70829287	70829487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17390.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	58.95	51.06	59.9	82.05	82.23	76.2	60.79	78.9	70.81	62.76	107.53	54.82
Merged-chr12-35711650-3	chr12	35711532	35711732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16514.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	16.56	13.33	21.11	23.33	29.86	24.46	21.92	43.93	16.13	8.54	25.12	10.02
Merged-chr19-46598955-3	chr19	46598847	46599047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-159.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	174.44	160.73	205.93	160.48	202.51	253.37	146.82	184.96	242.52	249.55	236.17	135.02
Merged-chr15-53134388-3	chr15	53134293	53134493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	211790.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	21.0	21.13	42.78	39.01	42.55	46.1	25.24	57.56	36.58	24.6	39.7	21.3
Merged-chr6-140817032-3	chr6	140816927	140817127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	190142.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	54.51	36.22	45.64	50.27	61.37	49.23	38.53	55.18	98.15	83.85	91.95	44.8
Merged-chr14-27182350-3	chr14	27182271	27182471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	38378.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	46.44	11.07	59.33	49.87	76.5	57.7	87.36	116.97	44.84	48.2	76.38	46.36
Merged-chr4-124714760-3	chr4	124714661	124714861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029157)	promoter-TSS (NM_029157)	-100.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	56.13	67.91	61.04	67.17	78.55	83.1	40.86	51.59	71.99	56.74	97.98	48.56
Merged-chr12-25203764-3	chr12	25203662	25203862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74588.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	46.44	32.7	55.9	41.02	43.77	53.93	41.85	56.72	39.34	45.19	34.17	28.82
Merged-chr1-12304050-1	chr1	12303950	12304150	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-121936.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	4.04	0.5	7.42	5.63	4.5	4.08	9.63	8.02	1.77	0.0	2.51	1.25
Merged-chr17-26933131-3	chr17	26933044	26933244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302397)	promoter-TSS (NM_001302397)	17.0	NR_126158	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	41.99	52.57	52.48	54.3	54.41	99.09	76.07	49.07	58.81	76.82	58.29	50.12
Merged-chr11-5444960-3	chr11	5444863	5445063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-116.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	107.81	118.72	95.84	96.53	119.87	121.35	58.46	58.71	201.41	149.13	171.85	76.75
Merged-chr5-32458950-3	chr5	32458844	32459044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-26.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	247.12	294.54	261.84	273.9	278.6	321.41	317.89	234.79	322.18	355.49	410.03	218.66
Merged-chr12-77060224-3	chr12	77060129	77060329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97981.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	43.61	20.37	41.64	55.5	27.82	33.87	56.47	65.86	33.24	29.62	55.78	24.75
Merged-chr2-79228207-3	chr2	79228126	79228326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27200.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	73.89	50.05	87.85	88.48	71.18	69.61	64.77	77.44	48.19	50.21	66.33	39.47
Merged-chr16-11254420-3	chr16	11254319	11254519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130008)	promoter-TSS (NM_001130008)	26.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	150.62	158.46	132.35	168.92	145.23	195.98	114.27	140.55	162.46	172.22	213.56	95.23
Merged-chr9-44228343-3	chr9	44228262	44228462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	5684.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	35.13	38.99	22.82	44.64	29.46	52.37	44.84	47.33	46.81	49.21	83.91	31.33
Merged-chr11-80177415-3	chr11	80177307	80177507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6465.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	86.41	66.91	71.88	55.91	69.96	73.06	77.4	55.96	83.59	88.37	88.94	61.09
Merged-chr8-117454387-3	chr8	117454292	117454492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 17 of 20)	MLT1J|LTR|ERVL-MaLR	1369.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	18.17	18.11	27.38	30.16	38.05	34.81	16.61	34.79	46.22	39.16	57.79	27.88
Merged-chr7-44281138-3	chr7	44281034	44281234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7976.0	NM_001361137	102632142.0		NM_001361137		Gm18905	-	predicted gene, 18905	protein-coding	27.46	22.13	21.11	27.75	18.0	22.58	13.95	24.45	27.54	18.58	35.68	12.53
Merged-chr2-146134476-2	chr2	146134365	146134565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87532.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	22.61	18.36	24.53	22.52	10.64	21.01	11.63	17.07	7.87	3.01	7.54	6.58
Merged-chr4-32657081-3	chr4	32656998	32657198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081392)	promoter-TSS (NM_001081392)	-21.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	34.32	30.94	27.95	26.14	47.87	46.72	22.92	29.72	58.61	52.22	40.2	37.28
Merged-chr2-25983463-3	chr2	25983356	25983556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-174.0	NM_001276361	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	119.93	94.32	98.12	88.08	143.6	159.61	84.7	107.55	147.71	165.19	219.58	91.79
Merged-chr16-18812293-4	chr16	18812188	18812388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009862)	promoter-TSS (NM_009862)	-6.0	NR_028403	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	21.4	12.07	22.82	30.97	25.36	32.3	22.92	28.4	36.39	24.1	56.78	38.85
Merged-chr10-71356321-3	chr10	71356200	71356400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	L1MC4|LINE|L1	8537.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	22.61	11.82	21.68	18.9	22.5	21.64	17.94	32.58	19.08	25.11	26.63	18.48
Merged-chr2-167319194-3	chr2	167319098	167319298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	29980.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	89.24	81.75	120.37	87.28	126.41	163.37	95.0	133.46	145.75	133.06	152.75	90.85
Merged-chr11-115277099-3	chr11	115277020	115277220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-151.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	190.19	159.72	161.44	134.33	210.28	252.43	116.26	132.39	210.06	232.98	208.53	126.87
Merged-chr6-122872988-3	chr6	122872870	122873070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1587.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	69.86	50.31	67.31	91.7	83.87	83.41	75.4	76.32	80.25	97.41	95.47	42.92
Merged-chr12-32061339-3	chr12	32061245	32061445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011158)	promoter-TSS (NM_011158)	-66.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	34.73	22.13	30.8	23.73	27.82	30.1	21.26	34.46	45.43	51.21	61.3	38.22
Merged-chr2-102948696-3	chr2	102948609	102948809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47044.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	52.09	51.81	56.48	52.29	70.77	106.61	47.83	69.08	56.25	64.77	60.3	51.06
Merged-chr4-119131312-1	chr4	119131212	119131412	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	22567.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	2.42	1.76	10.27	4.02	3.68	2.2	5.65	10.68	7.28	5.02	9.04	8.46
Merged-chr2-59160761-3	chr2	59160656	59160856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	-73.0	NM_001362394	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	127.2	127.27	143.18	138.36	139.5	148.01	129.21	177.7	150.66	135.07	237.67	103.69
Merged-chr2-71500047-3	chr2	71499953	71500153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-29392.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	70.26	42.26	74.73	57.51	84.68	105.99	49.49	92.36	103.65	87.87	89.44	56.07
Merged-chr11-3196514-5	chr11	3196351	3196551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2988.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	16.96	13.58	15.4	14.48	25.77	8.47	24.58	16.6	29.5	21.09	25.12	34.46
Merged-chr11-5445658-3	chr11	5445530	5445730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-783.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	39.57	35.72	45.64	41.02	54.41	51.43	45.18	53.97	52.91	59.25	52.76	31.33
Merged-chr6-39781102-3	chr6	39781007	39781207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29829.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	26.25	25.15	42.21	26.55	33.14	26.34	16.28	27.5	50.35	44.19	40.7	27.57
Merged-chr4-59238804-3	chr4	59238664	59238864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21287.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	83.99	54.33	67.88	86.47	74.46	72.12	68.1	96.98	116.44	103.43	179.39	61.09
Merged-chr10-120113026-3	chr10	120112918	120113118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-53.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	154.25	108.16	170.0	155.65	174.28	168.08	152.47	216.53	203.97	203.35	307.52	113.4
Merged-chr1-156450716-3	chr1	156450582	156450782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	23646.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	60.57	37.98	66.17	67.57	74.87	99.4	68.76	86.61	29.7	33.14	40.7	25.06
Merged-chr10-111164689-3	chr10	111164595	111164795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-107.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	232.59	238.2	256.14	242.93	240.96	266.22	223.22	236.86	341.25	317.33	437.66	176.68
Merged-chr6-82996942-3	chr6	82996828	82997028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	36543.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	103.37	102.87	105.53	125.08	89.59	133.27	97.99	94.35	144.37	151.64	124.11	96.8
Merged-chrX-74271331-3	chrX	74271235	74271435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_052835, intron 2 of 6)	intron (NM_052835, intron 2 of 6)	519.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	21.8	23.64	17.68	20.11	26.18	35.12	27.57	26.97	22.82	54.23	38.19	23.49
Merged-chr12-85532741-3	chr12	85532661	85532861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58871.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	78.34	59.86	69.6	71.99	76.09	72.12	74.74	79.07	71.99	99.42	108.54	61.71
Merged-chr13-49173236-4	chr13	49173169	49173369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-14278.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	19.38	10.56	8.56	11.66	22.5	18.5	35.54	18.95	30.88	37.16	37.18	26.31
Merged-chr5-34525815-3	chr5	34525702	34525902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011893)	promoter-TSS (NM_011893)	18.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	63.4	68.16	61.04	51.48	64.64	44.21	50.16	79.15	86.74	70.8	109.04	55.13
Merged-chr5-35631403-3	chr5	35631302	35631502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42639.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	16.15	23.64	49.63	45.45	17.59	33.24	30.23	48.11	25.96	28.62	60.3	22.56
Merged-chr15-95808070-3	chr15	95807967	95808167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	17224.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	51.28	31.94	72.45	47.06	47.87	53.62	60.12	57.25	66.87	52.72	54.77	41.04
Merged-chr10-51520183-3	chr10	51520075	51520275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	29277.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	31.09	24.15	59.33	32.58	47.05	55.5	26.57	56.41	62.35	42.68	66.33	35.4
Merged-chr6-38965655-3	chr6	38965560	38965760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	46674.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	17.77	22.13	39.93	24.53	17.18	29.79	15.61	36.03	23.8	24.1	34.17	24.43
Merged-chr1-58802538-3	chr1	58802477	58802677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	75.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	50.88	31.44	27.95	49.07	67.09	61.46	42.19	63.65	72.18	63.27	112.05	62.34
Merged-chr7-24662734-3	chr7	24662624	24662824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030681, exon 2 of 2)	non-coding (NR_030681, exon 2 of 2)	1430.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	20.59	17.36	22.82	18.5	25.36	19.76	9.3	21.87	38.16	30.63	25.63	13.16
Merged-chr8-56315375-3	chr8	56315271	56315471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	20819.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	25.04	27.92	37.08	41.02	36.0	34.49	32.55	54.31	30.68	22.09	43.72	23.18
Merged-chr15-64191459-3	chr15	64191365	64191565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	121208.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	29.48	15.59	26.24	28.15	26.59	27.28	12.62	27.81	32.06	26.11	40.7	29.76
Merged-chr11-87448291-3	chr11	87448206	87448406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	20715.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	64.61	43.26	51.34	38.21	66.68	42.33	24.25	23.66	59.2	42.18	94.97	33.52
Merged-chr19-32389225-3	chr19	32389120	32389320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	4.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	44.42	42.76	42.78	51.88	49.09	49.86	41.85	44.16	58.22	55.23	63.82	43.54
Merged-chr7-19405615-3	chr7	19405534	19405734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1530.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	22.21	17.61	18.25	26.14	30.27	42.33	18.93	31.57	26.95	30.13	33.16	18.48
Merged-chr19-5688925-3	chr19	5688775	5688975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022012)	promoter-TSS (NM_022012)	33.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	145.77	136.33	108.39	103.77	112.91	149.26	95.33	78.2	142.99	188.79	141.7	85.21
Merged-chr18-4908907-3	chr18	4908814	4909014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96428.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	21.8	19.87	34.23	18.9	42.14	33.55	25.58	42.7	42.88	28.12	60.8	18.48
Merged-chr1-94582208-3	chr1	94582099	94582299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-215243.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	23.82	19.37	33.66	34.19	82.64	48.92	73.08	121.51	76.91	79.83	83.41	44.17
Merged-chr14-67858941-3	chr14	67858845	67859045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105857)	TTS (NR_105857)	800.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	55.32	37.73	55.9	46.66	84.28	116.02	52.15	67.18	48.98	68.79	57.28	33.52
Merged-chr7-89248279-3	chr7	89248170	89248370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	90517.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	31.09	26.16	31.38	48.26	55.64	33.55	30.23	49.12	38.16	39.16	72.36	35.4
Merged-chr4-33031416-3	chr4	33031308	33031508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_036602)	promoter-TSS (NR_036602)	28.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	128.81	103.13	123.22	96.93	154.23	178.42	129.88	178.4	225.6	207.87	334.65	112.15
Merged-chr5-122769432-3	chr5	122769302	122769502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	ID_B1|SINE|B4	10008.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	50.07	29.43	38.22	28.56	65.05	87.49	55.8	62.24	60.19	46.19	57.79	37.28
Merged-chr6-115480893-3	chr6	115480787	115480987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	MIR|SINE|MIR	58821.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	48.46	43.01	60.47	51.08	49.91	68.05	49.83	45.36	60.58	62.76	69.85	33.52
Merged-chr6-143099635-3	chr6	143099553	143099753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362118, intron 2 of 25)	CpG	499.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	7.27	17.36	14.83	21.72	20.05	17.87	24.91	18.98	17.9	23.6	16.58	20.68
Merged-chr12-44269720-3	chr12	44269619	44269819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	565.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	65.82	53.83	53.62	53.89	56.87	90.0	48.83	58.49	77.5	89.88	108.54	49.18
Merged-chr11-69586061-2	chr11	69585950	69586150	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	5691.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	3.23	7.04	2.28	0.8	76.5	74.32	29.56	54.0	58.61	75.82	77.38	42.29
Merged-chr7-109968007-3	chr7	109967904	109968104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7534.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	57.74	55.84	65.03	61.54	63.0	63.34	43.85	65.94	75.92	56.74	75.37	46.36
Merged-chr5-143403830-3	chr5	143403759	143403959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025841)	promoter-TSS (NM_025841)	39.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	41.59	32.95	31.38	27.75	47.05	73.38	25.58	37.82	47.99	51.72	51.76	35.09
Merged-chr17-84084126-3	chr17	84084011	84084211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	5451.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	15.34	17.86	22.82	16.49	22.5	17.56	13.95	21.81	25.77	32.13	36.68	18.48
Merged-chr7-19131581-3	chr7	19131483	19131683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175530, intron 1 of 1)	CpG	11724.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	279.02	245.99	281.24	283.15	299.05	363.43	200.3	251.16	294.05	314.82	340.68	183.57
Merged-chr18-6490834-3	chr18	6490722	6490922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	35.0	NM_027497	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	43.21	54.08	39.93	51.88	59.32	52.99	42.52	48.06	53.3	50.21	74.37	38.22
Merged-chrUn_JH584304-48928-1	chrUn_JH584304	48828	49028	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10761.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	25.37	41.17	27.13	35.71
Merged-chr18-55389837-3	chr18	55389722	55389922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-397231.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	61.38	45.78	54.76	49.47	58.91	79.65	40.52	54.93	66.48	93.89	99.49	57.33
Merged-chr12-98283294-3	chr12	98283189	98283389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1c|LTR|Gypsy	14654.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	46.03	35.97	63.89	41.02	61.77	53.62	34.55	49.29	44.06	65.27	73.36	27.88
Merged-chr3-27711299-3	chr3	27711200	27711400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-848.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	71.47	76.97	44.5	33.38	61.37	95.95	47.83	43.51	71.0	76.82	73.86	35.4
Merged-chr19-11912914-3	chr19	11912816	11913016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 1 of 18)	CpG	517.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	53.3	75.96	26.81	23.73	39.27	100.03	37.2	22.15	85.95	83.35	39.7	21.62
Merged-chr18-60714919-3	chr18	60714826	60715026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	12640.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	42.4	36.22	29.66	33.38	36.41	45.15	29.56	54.56	43.86	36.15	47.74	30.7
Merged-chr2-132816123-3	chr2	132816012	132816212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356443)	promoter-TSS (NM_001356443)	-29.0	NM_025676	66634.0	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	207.95	151.42	172.85	169.73	191.46	180.62	129.88	157.57	185.28	182.77	236.67	117.79
Merged-chr9-88705476-3	chr9	88705401	88705601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	14086.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	138.5	170.28	189.39	195.07	153.0	262.15	114.6	132.37	217.14	230.47	246.22	137.52
Merged-chr1-130387449-3	chr1	130387329	130387529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35395.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	33.11	48.04	46.78	40.22	32.73	52.68	29.9	12.73	63.33	55.23	56.78	32.27
Merged-chr17-34293733-3	chr17	34293630	34293830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5959.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	67.03	58.1	27.38	34.19	90.82	103.48	33.55	61.49	119.0	81.34	64.82	65.16
Merged-chr9-96119288-3	chr9	96119210	96119410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177352)	promoter-TSS (NM_177352)	-119.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	143.35	114.7	147.18	112.21	164.05	190.34	100.98	143.61	202.39	179.75	209.54	93.35
Merged-chr1-191250182-3	chr1	191250072	191250272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25718.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	52.49	47.29	57.05	77.22	101.46	70.24	86.7	131.02	93.62	83.85	129.64	94.92
Merged-chr13-94788986-3	chr13	94788915	94789115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009321)	promoter-TSS (NM_009321)	72.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	50.47	52.57	43.35	40.62	37.23	51.43	54.48	34.91	35.21	46.7	46.73	28.19
Merged-chr9-44066972-3	chr9	44066873	44067073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198092)	promoter-TSS (NM_198092)	-48.0	NM_198092	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	116.7	105.14	99.83	88.89	116.19	164.94	62.12	78.5	148.3	131.05	107.03	81.14
Merged-chr11-50210772-2	chr11	50210699	50210899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	21.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	78.74	80.99	74.16	37.4	57.68	102.54	25.91	27.64	143.78	179.25	118.59	74.24
Merged-chr9-72530438-3	chr9	72530325	72530525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045735, intron 1 of 2)	intron (NR_045735, intron 1 of 2)	1433.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	35.94	33.2	32.52	41.02	22.5	48.92	23.92	29.36	50.16	56.24	56.28	32.58
Merged-chr2-124202790-3	chr2	124202680	124202880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	19578.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	34.73	17.36	22.82	27.75	41.32	27.91	23.25	37.6	22.23	9.04	32.16	26.63
Merged-chr11-51927377-3	chr11	51927275	51927475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40256.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	85.6	64.64	85.0	95.72	68.73	76.2	110.61	111.84	87.92	67.28	95.97	66.73
Merged-chr11-70615215-3	chr11	70615139	70615339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-655.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	16.56	19.37	18.83	18.9	29.05	37.0	22.59	27.67	24.98	25.61	32.66	15.04
Merged-chr19-46396837-3	chr19	46396736	46396936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015752)	promoter-TSS (NM_015752)	-60.0	NM_001025391	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	114.68	99.1	102.11	101.76	99.41	136.09	65.77	100.4	135.32	122.51	142.2	84.9
Merged-chr4-34495210-3	chr4	34495107	34495307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55408.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	41.19	26.16	41.07	57.92	48.27	67.73	40.52	86.44	70.41	54.23	71.86	38.22
Merged-chr2-127079272-3	chr2	127079171	127079371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 1 of 7)	RLTR28|LTR|ERVL	8614.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	25.84	32.95	38.79	50.68	23.73	29.48	11.96	15.67	30.49	25.11	35.68	27.25
Merged-chr5-121842113-3	chr5	121842018	121842218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5259.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	37.55	39.49	50.77	37.0	41.73	35.12	41.52	74.27	49.96	23.1	28.64	42.92
Merged-chr6-120470809-3	chr6	120470669	120470869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	7572.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	106.6	114.95	127.21	77.22	98.18	162.43	111.28	132.73	107.98	108.96	120.09	71.11
Merged-chr2-174464098-3	chr2	174463956	174464156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025983)	promoter-TSS (NM_025983)	45.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	52.49	51.56	61.61	81.65	56.05	59.58	49.16	79.74	84.58	61.76	119.09	68.92
Merged-chr9-72526285-3	chr9	72526185	72526385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	5573.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	25.84	20.63	20.54	30.57	36.41	39.82	20.93	23.58	12.0	17.07	23.11	18.17
Merged-chr4-152477627-3	chr4	152477558	152477758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355173)	promoter-TSS (NM_001355173)	-80.0	NM_001355739	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	140.12	113.94	154.59	140.37	173.05	150.2	105.63	175.57	211.64	212.39	294.45	145.04
Merged-chr5-128733951-1	chr5	128733851	128734051	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2295.0	NM_021311	57749.0	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	2.02	1.01	4.56	2.41	3.27	10.35	3.32	9.11	3.15	0.0	3.01	4.07
Merged-chr6-5159525-3	chr6	5159423	5159623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 15 of 15)	intron (NM_181595, intron 15 of 15)	34423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	35.94	29.43	47.92	56.31	48.27	39.2	58.46	75.2	43.07	35.65	56.28	33.52
Merged-chr10-17723163-3	chr10	17723051	17723251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-77.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	134.87	124.0	85.0	128.7	118.64	121.67	63.11	101.52	171.12	159.67	144.21	99.93
Merged-chr8-107150636-3	chr8	107150541	107150741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025558)	promoter-TSS (NM_025558)	-20.0	NM_025558	66427.0	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	29.88	23.14	22.25	18.5	37.64	42.33	24.25	38.8	63.92	81.34	69.85	42.29
Merged-chr4-145195031-3	chr4	145194948	145195148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276465)	promoter-TSS (NM_001276465)	-43.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	57.34	36.72	36.51	54.7	38.05	54.25	26.57	41.89	75.92	66.78	90.95	39.78
Merged-chr15-89429472-3	chr15	89429377	89429577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_004843, exon 1 of 27)	non-coding (NR_004843, exon 1 of 27)	450.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	107.41	86.78	86.71	95.32	120.28	119.47	76.73	112.4	125.09	118.5	198.98	73.62
Merged-chr6-38534801-3	chr6	38534694	38534894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-67.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	52.09	33.7	53.62	41.02	70.37	89.05	37.87	61.6	74.74	83.85	73.86	47.93
Merged-chr17-78937156-3	chr17	78937094	78937294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	59.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	148.6	135.32	154.02	154.85	188.19	212.29	118.92	206.36	171.71	170.72	217.57	111.84
Merged-chr2-116932466-3	chr2	116932365	116932565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32313.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	56.94	51.31	91.84	81.65	93.68	95.95	98.32	93.22	105.23	101.93	131.15	64.85
Merged-chr3-8969724-3	chr3	8969619	8969819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-5573.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	40.78	32.95	67.88	75.61	65.46	67.73	77.4	123.08	87.13	83.85	131.65	77.06
Merged-chr16-3847191-3	chr16	3847110	3847310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081217)	promoter-TSS (NM_001081217)	-13.0	NM_001081217	385674.0	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	77.93	77.22	108.96	104.17	127.23	127.31	102.64	166.04	118.41	97.91	175.87	85.52
Merged-chr4-46536116-3	chr4	46536015	46536215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	26.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	22.61	16.85	22.25	40.62	23.32	25.09	24.25	37.37	29.9	23.1	21.61	19.11
Merged-chr2-27515126-3	chr2	27515007	27515207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-40.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	51.28	46.03	27.95	28.96	46.64	47.66	10.63	37.46	59.6	49.71	58.79	38.22
Merged-chr11-21288316-1	chr11	21288216	21288416	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290628, intron 7 of 22)	B2_Mm1t|SINE|B2	49284.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.85	1.76	4.56	0.8	26.59	16.93	16.61	13.29	7.47	9.54	10.55	6.27
Merged-chr2-152736234-3	chr2	152736123	152736323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010495)	promoter-TSS (NM_010495)	-28.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	122.35	96.08	135.2	117.44	116.59	127.31	75.4	82.63	120.37	131.05	164.31	75.81
Merged-chr17-13144966-4	chr17	13144813	13145013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13122.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	12.92	19.37	30.8	21.32	14.73	36.69	36.21	12.25	27.54	35.15	31.15	19.42
Merged-chr15-93268226-3	chr15	93268125	93268325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	6954.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	50.88	42.76	59.33	37.4	42.55	38.26	47.17	47.05	56.25	37.16	58.29	20.36
Merged-chr2-180273594-3	chr2	180273479	180273679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-114.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	196.24	210.53	231.61	236.49	221.73	291.62	218.24	267.67	258.45	286.2	354.25	164.15
Merged-chr13-101909200-3	chr13	101909110	101909310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140993.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	159.5	138.09	168.86	151.63	179.6	197.55	143.17	159.37	162.86	159.17	172.85	95.55
Merged-chr8-35540706-1	chr8	35540606	35540806	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45173.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.0	0.0	0.57	1.61	0.0	0.63	0.0	1.04	25.57	26.61	20.6	20.05
Merged-chr11-85521175-3	chr11	85521075	85521275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	168011.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	66.22	53.32	74.16	86.47	94.91	116.65	81.05	109.12	73.17	65.27	67.84	46.05
Merged-chr7-31037177-3	chr7	31037065	31037265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287217, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	3152.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	47.65	59.86	89.56	34.19	45.41	46.1	31.22	23.24	86.74	41.67	80.4	45.11
Merged-chr7-45124446-3	chr7	45124310	45124510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-21.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	105.79	122.49	78.15	92.91	128.05	152.08	64.77	98.36	164.43	161.18	166.82	89.91
Merged-chr13-18800599-3	chr13	18800495	18800695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	83303.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	159.1	105.14	165.43	113.82	150.14	156.16	135.53	143.41	130.4	119.5	155.77	71.74
Merged-chr2-3621546-3	chr2	3621447	3621647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-91911.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	37.55	30.69	63.89	53.49	27.0	32.3	36.87	37.4	36.58	34.65	51.25	30.07
Merged-chr11-120776258-3	chr11	120776165	120776365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7939.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	37.15	30.43	26.24	29.76	29.46	37.94	16.61	27.28	43.66	58.24	49.24	28.19
Merged-chr8-36248131-5	chr8	36248029	36248229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081150, intron 1 of 11)	CpG	1387.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	41.59	54.33	37.08	43.84	37.64	59.89	38.2	43.07	84.18	79.33	77.88	57.95
Merged-chr10-7040322-3	chr10	7040224	7040424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17139.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	22.21	16.85	65.6	59.53	47.46	38.26	74.41	88.68	30.88	34.65	83.41	28.19
Merged-chr16-74233975-1	chr16	74233875	74234075	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358493, intron 2 of 28)	MTD|LTR|ERVL-MaLR	108092.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.81	0.0	2.28	3.22	22.09	14.74	17.27	23.92	6.29	1.0	2.01	3.76
Merged-chr15-99815062-3	chr15	99814975	99815175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	5074.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	41.99	29.93	49.06	47.06	36.0	35.43	14.62	28.71	57.04	51.72	63.31	45.42
Merged-chr9-90014816-3	chr9	90014717	90014917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-39450.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	32.3	24.9	36.51	48.67	28.64	21.95	19.6	35.83	38.75	27.11	50.75	28.19
Merged-chr5-135168408-3	chr5	135168299	135168499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009745)	promoter-TSS (NM_009745)	27.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	71.88	64.64	62.18	49.07	45.41	58.64	30.89	36.28	77.5	70.29	86.93	51.69
Merged-chr9-108936714-3	chr9	108936640	108936840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	92.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	39.17	42.51	46.21	35.39	40.5	41.08	31.56	30.84	52.32	33.14	52.26	23.81
Merged-chr18-10030027-3	chr18	10029943	10030143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360884)	promoter-TSS (NM_001360884)	106.0	NM_001038589	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	56.94	55.59	46.21	49.87	56.05	76.51	52.15	59.55	80.45	80.34	107.03	46.36
Merged-chr18-46434061-3	chr18	46433948	46434148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31768.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	34.73	27.92	33.66	45.05	31.91	27.28	46.5	53.61	46.81	32.64	63.31	33.83
Merged-chr8-26835844-3	chr8	26835749	26835949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11426.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	18.57	30.69	35.37	41.43	44.18	26.65	55.47	50.64	37.57	36.65	55.78	26.31
Merged-chr2-155050929-3	chr2	155050820	155051020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_015770)	TTS (NM_015770)	23577.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	24.63	32.95	34.8	30.16	53.59	52.37	44.18	27.08	35.21	45.19	34.17	40.1
Merged-chr12-55491301-3	chr12	55491209	55491409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010907, exon 3 of 6)	exon (NM_010907, exon 3 of 6)	1338.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	76.32	93.07	41.07	9.25	42.14	109.75	38.86	15.03	87.13	110.97	55.78	14.72
Merged-chr11-83064144-3	chr11	83064041	83064241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-971.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	80.76	56.59	70.17	41.02	110.87	94.07	62.45	50.38	100.51	109.46	82.91	40.41
Merged-chr1-63414043-1	chr1	63413943	63414143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-31848.0	NM_011780	23792.0	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	14.13	31.94	25.1	22.93	0.82	5.64	1.66	1.37	3.34	5.52	2.51	0.0
Merged-chr8-109778542-3	chr8	109778435	109778635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-48.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	93.68	104.38	94.13	104.97	105.55	139.85	76.73	113.27	111.92	107.95	176.37	71.42
Merged-chr2-118814162-3	chr2	118814052	118814252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026412, exon 1 of 9)	exon (NM_026412, exon 1 of 9)	149.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	36.34	20.63	26.81	19.71	35.18	38.88	26.91	30.87	41.5	22.09	53.26	22.87
Merged-chr10-6717756-3	chr10	6717675	6717875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-40818.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	85.2	58.61	41.07	82.85	50.32	72.12	59.79	88.6	83.79	63.77	90.95	48.87
Merged-chr1-89450228-3	chr1	89450133	89450333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4578.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	37.15	26.16	41.07	43.84	47.46	54.56	69.76	94.88	58.42	23.6	36.68	13.78
Merged-chr6-112760841-3	chr6	112760743	112760943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 10 of 21)	intron (NM_080448, intron 10 of 21)	-64173.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	23.02	30.69	19.97	28.15	41.73	36.06	10.63	18.64	45.43	32.64	34.67	15.35
Merged-chr1-173737177-3	chr1	173737070	173737270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4639.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	48.05	55.84	64.46	73.2	102.28	99.4	61.78	102.11	120.96	140.59	107.03	63.91
Merged-chr10-13966947-3	chr10	13966839	13967039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	560.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	45.23	49.05	67.88	28.15	46.64	57.7	67.1	40.74	87.13	76.32	115.07	40.41
Merged-chr7-35028824-3	chr7	35028719	35028919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	27747.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	103.78	71.94	153.45	121.46	109.64	114.14	150.14	186.08	101.1	94.9	186.92	90.22
Merged-chr3-98005535-3	chr3	98005441	98005641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7997.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	25.84	30.43	61.04	39.42	32.73	31.98	19.6	27.73	32.85	44.69	26.13	16.29
Merged-chr10-111506446-3	chr10	111506322	111506522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	136.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	191.4	175.31	159.73	121.87	151.78	270.93	139.51	148.49	248.42	267.12	327.12	90.53
Merged-chr5-139666669-3	chr5	139666564	139666764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69669.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	35.53	25.15	43.35	39.82	39.68	33.55	28.57	42.14	32.65	33.14	21.61	23.18
Merged-chr11-78183582-3	chr11	78183460	78183660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	24.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	51.69	35.72	30.23	35.8	67.09	70.55	14.28	34.07	56.65	56.74	47.74	26.31
Merged-chr10-80329962-3	chr10	80329854	80330054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	-191.0	NM_001204931	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	112.66	107.91	123.22	85.67	161.19	176.86	110.28	105.45	189.21	209.88	212.55	101.19
Merged-chr13-44733586-3	chr13	44733516	44733716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	CpG	2345.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	54.51	38.99	40.5	38.61	39.27	63.03	34.21	40.68	67.46	80.84	108.03	51.38
Merged-chr18-57878153-3	chr18	57878063	57878263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-515.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	40.78	31.44	37.08	25.34	38.86	48.6	35.87	37.82	62.94	58.75	54.77	33.83
Merged-chr9-99182315-3	chr9	99182239	99182439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42128.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	136.48	210.03	197.95	154.44	230.33	275.0	222.22	216.93	268.68	274.65	323.1	170.42
Merged-chr2-102400643-3	chr2	102400583	102400783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020267, exon 1 of 5)	exon (NM_020267, exon 1 of 5)	217.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	19.79	27.42	30.23	38.21	19.23	27.59	26.91	24.45	29.7	33.64	37.18	21.93
Merged-chr5-125434143-3	chr5	125434046	125434246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_203319)	promoter-TSS (NM_203319)	-98.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	166.36	140.86	203.65	202.71	190.64	204.45	123.57	159.45	213.8	234.48	235.66	145.67
Merged-chr4-155235458-3	chr4	155235369	155235569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12934.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	41.59	24.4	34.23	37.81	50.73	36.69	15.28	34.54	40.71	50.71	59.8	25.06
Merged-chrX-51018882-3	chrX	51018768	51018968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172413)	promoter-TSS (NM_172413)	-850.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	44.01	43.01	41.07	25.74	40.09	59.89	28.9	41.22	68.25	56.24	108.54	44.48
Merged-chr3-69004545-3	chr3	69004445	69004645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133786)	promoter-TSS (NM_133786)	25.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	81.97	65.15	82.15	61.94	90.41	114.14	55.8	86.69	132.37	113.48	139.19	60.46
Merged-chr10-98958940-3	chr10	98958850	98959050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	43798.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	31.9	32.2	28.52	27.35	31.09	53.93	19.93	40.15	47.4	63.77	41.71	28.51
Merged-chr1-144317791-3	chr1	144317701	144317901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68697.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	130.02	105.89	148.89	158.06	165.28	185.01	155.12	197.33	99.72	103.94	137.18	72.68
Merged-chr6-123049948-3	chr6	123049853	123050053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190310)	promoter-TSS (NM_001190310)	-9.0	NM_027218	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	19.79	12.07	22.82	34.19	26.59	33.87	31.56	43.68	24.98	16.07	26.63	14.1
Merged-chr17-25184516-3	chr17	25184425	25184625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-36.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	61.78	58.61	36.51	52.29	58.91	60.21	36.87	46.35	87.92	74.81	73.36	61.4
Merged-chr3-95855867-3	chr3	95855780	95855980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027541)	promoter-TSS (NM_027541)	5.0	NM_001316751	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	69.05	48.04	35.37	55.1	67.09	54.88	29.9	47.72	70.22	65.78	78.39	39.78
Merged-chr7-141447265-3	chr7	141447173	141447373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-378.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	41.19	29.68	35.94	42.63	41.32	57.38	22.92	33.79	73.95	50.71	78.89	40.41
Merged-chr2-166699613-4	chr2	166699469	166699669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	14263.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	21.8	38.48	22.25	20.11	34.77	28.22	30.89	16.96	38.16	36.65	44.22	24.12
Merged-chr7-99483750-3	chr7	99483642	99483842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012052)	promoter-TSS (NM_012052)	-33.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	134.87	142.87	146.61	120.66	147.28	188.14	112.61	106.43	168.17	189.29	132.15	99.62
Merged-chr7-132931108-3	chr7	132931011	132931211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362198)	promoter-TSS (NM_001362198)	-31.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	144.56	123.5	128.92	143.18	150.55	179.05	114.6	143.33	209.87	217.41	240.19	108.39
Merged-chr7-39544399-3	chr7	39544301	39544501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26635.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	37.96	49.05	26.81	73.2	56.87	43.27	66.43	85.65	57.63	62.26	89.94	39.16
Merged-chr8-84656938-3	chr8	84656846	84657046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5906.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	80.76	93.82	112.95	52.29	116.19	145.18	91.68	81.53	97.95	88.37	115.57	48.56
Merged-chr1-9747805-3	chr1	9747713	9747913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040462, exon 1 of 4)	non-coding (NR_040462, exon 1 of 4)	165.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	15.75	19.37	13.12	22.93	22.91	20.7	49.83	23.44	32.26	36.65	50.75	20.36
Merged-chr9-21515517-3	chr9	21515409	21515609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5275.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	29.88	47.04	53.62	25.74	48.68	63.34	23.92	29.83	55.66	39.67	37.18	20.99
Merged-chr15-74988702-3	chr15	74988601	74988801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5271.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	4.44	15.85	14.83	6.84	15.55	20.07	12.95	19.15	20.46	29.12	17.59	10.34
Merged-chr18-62225235-3	chr18	62225133	62225333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45133.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	39.57	33.45	51.34	32.18	32.32	37.94	29.23	40.18	32.06	31.13	33.16	15.66
Merged-chr6-122602389-3	chr6	122602298	122602498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	46.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	79.14	74.7	103.82	68.78	83.87	78.08	57.13	79.77	124.7	144.61	154.76	84.9
Merged-chr1-34715381-2	chr1	34715263	34715463	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79153.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	1.21	1.51	2.28	0.8	19.64	22.89	10.63	26.1	24.59	15.57	26.13	17.54
Merged-chr2-103945992-3	chr2	103945910	103946110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11985.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	24.23	30.94	57.05	57.11	54.0	26.65	35.54	59.08	60.97	47.7	64.82	31.64
Merged-chr15-8109184-3	chr15	8109077	8109277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133227)	promoter-TSS (NM_133227)	-136.0	NM_133227	170762.0	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	112.66	90.05	94.13	115.83	105.55	130.13	93.67	136.29	131.39	102.93	167.33	68.61
Merged-chr12-85489435-3	chr12	85489334	85489534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15544.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	41.99	25.4	57.05	41.02	70.37	76.2	62.45	75.25	55.86	46.19	88.44	34.77
Merged-chr11-116814708-2	chr11	116814611	116814811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347633, intron 2 of 4)	intron (NM_001347633, intron 2 of 4)	13335.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	45.23	36.22	40.5	52.29	47.87	45.78	36.54	60.93	13.57	2.01	4.02	3.76
Merged-chr17-8311849-3	chr17	8311760	8311960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073374)	promoter-TSS (NR_073374)	-742.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	18.57	21.38	31.95	23.33	22.09	21.95	33.22	39.48	46.81	33.64	40.7	25.06
Merged-chr3-41408595-3	chr3	41408544	41408744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84555.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	85.6	43.77	74.16	76.82	83.87	99.72	65.44	131.52	112.31	89.37	112.56	64.22
Merged-chr9-25570531-3	chr9	25570432	25570632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88935.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	107.41	98.6	138.05	155.65	170.6	180.3	137.85	171.42	137.09	114.48	183.41	107.45
Merged-chr13-37345351-3	chr13	37345269	37345469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010745)	promoter-TSS (NM_010745)	24.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	39.98	32.7	24.53	33.38	34.36	45.15	25.58	24.31	42.09	45.19	45.22	25.69
Merged-chr11-106319062-4	chr11	106318981	106319181	+	999.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133199, exon 24 of 24)	3' UTR (NM_133199, exon 24 of 24)	-4519.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	6.46	13.08	7.42	13.27	27.41	17.87	18.93	8.33	13.18	19.58	18.09	14.1
Merged-chr5-146293503-3	chr5	146293400	146293600	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	62250.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	26.65	19.12	35.37	18.1	25.36	28.54	26.24	46.43	26.75	17.07	33.67	14.41
Merged-chr13-101850276-3	chr13	101850193	101850393	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-82076.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	25.44	14.59	15.4	27.35	18.0	20.7	15.28	24.84	22.42	7.53	25.63	25.06
Merged-chr6-134461342-3	chr6	134461219	134461419	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 17 of 22)	intron (NM_008514, intron 17 of 22)	46891.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	35.94	22.13	54.19	32.18	49.91	67.1	56.47	73.21	17.31	15.57	23.11	8.46
Merged-chr6-43848627-3	chr6	43848528	43848728	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182350.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	21.0	38.23	27.38	22.52	67.5	82.16	78.72	73.85	45.24	41.17	70.35	22.24
Merged-chr9-66082168-3	chr9	66082059	66082259	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12428.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	52.09	51.56	42.21	41.02	13.91	46.41	18.6	28.99	46.03	35.15	45.22	26.31
Merged-chr17-81668168-3	chr17	81668076	81668276	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	70211.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	25.04	20.63	17.11	27.35	23.32	23.83	17.61	26.83	35.21	16.07	22.61	19.11
Merged-chr14-47354299-3	chr14	47354185	47354385	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19575.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	22.61	14.84	15.4	9.65	32.73	30.73	20.59	36.0	44.06	29.12	39.19	18.48
Merged-chr1-34867424-3	chr1	34867349	34867549	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145516, intron 6 of 7)	intron (NM_145516, intron 6 of 7)	17460.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	29.88	24.65	20.54	21.32	25.77	44.21	15.61	30.17	43.86	41.17	57.79	23.81
Merged-chr1-74773300-3	chr1	74773207	74773407	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1415.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	28.67	20.88	37.08	36.2	31.5	31.98	34.88	44.75	32.65	19.08	54.77	27.57
Merged-chr9-40783160-3	chr9	40783046	40783246	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-18127.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	26.25	15.34	14.26	18.1	29.86	22.26	14.28	11.16	38.55	27.62	32.66	19.42
Merged-chr19-8840550-3	chr19	8840471	8840671	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290823)	promoter-TSS (NM_001290823)	68.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	18.57	15.59	29.09	13.67	21.27	18.19	17.61	17.52	14.36	21.59	27.64	13.78
Merged-chr3-108151897-3	chr3	108151812	108152012	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3020.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	15.75	12.83	21.11	20.11	28.23	26.65	15.28	20.78	24.19	28.12	32.66	21.3
Merged-chr13-101918375-3	chr13	101918284	101918484	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-150167.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	14.54	8.8	22.25	17.7	24.14	17.87	20.93	38.16	25.37	21.09	23.11	14.1
Merged-chr1-34439463-8	chr1	34439296	34439496	+	999.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178601)	promoter-TSS (NM_178601)	276.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	98.12	71.69	76.44	78.03	112.5	140.48	45.84	84.56	132.96	166.7	170.34	63.59
Merged-chr1-164153011-2	chr1	164152918	164153118	+	999.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037987)	promoter-TSS (NR_037987)	-801.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	10.09	5.28	5.7	7.24	13.91	21.95	20.93	20.75	24.39	16.57	27.13	15.04
Merged-chr10-20077130-5	chr10	20077047	20077247	+	999.9091189999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71773.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	16.15	7.55	13.69	13.67	26.18	22.26	23.25	24.48	21.05	16.07	22.61	12.84
Merged-chrX-135742709-3	chrX	135742628	135742828	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026081)	promoter-TSS (NM_026081)	36.0	NM_001005385	67298.0	Mm.271980	NM_026081	ENSMUSG00000043384	Gprasp1	2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding	21.4	15.85	16.54	22.93	19.64	28.22	37.2	25.35	26.16	29.12	30.65	27.57
Merged-chr17-63492841-3	chr17	63492724	63492924	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7756.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	18.98	16.35	18.83	35.39	26.59	21.95	17.94	32.52	19.28	21.09	20.6	10.96
Merged-chr11-4536826-3	chr11	4536731	4536931	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	PB1D10|SINE|Alu	57984.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	28.67	17.1	17.68	18.1	26.18	15.05	20.59	21.34	25.57	22.09	24.62	20.68
Merged-chr10-42502786-3	chr10	42502670	42502870	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	716.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	4.85	16.6	11.98	14.48	13.5	13.17	8.97	7.29	21.24	18.08	19.09	18.48
Merged-chr5-123671203-3	chr5	123671110	123671310	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13151.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	16.56	23.14	21.68	17.29	20.86	27.91	18.93	26.13	27.14	23.1	24.12	29.76
Merged-chr6-124478559-3	chr6	124478459	124478659	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13775.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	36.75	33.45	11.41	20.91	39.68	56.76	17.94	23.66	56.65	52.22	39.7	30.7
Merged-chr13-112386715-3	chr13	112386616	112386816	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77354.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	16.15	20.12	15.97	18.5	20.86	18.81	11.96	16.35	39.93	30.63	28.64	12.53
Merged-chr1-127242998-3	chr1	127242908	127243108	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	38022.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	35.13	26.91	17.68	29.76	24.96	31.67	21.59	30.56	43.27	42.18	27.64	20.68
Merged-chrX-50970119-3	chrX	50970014	50970214	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-27404.0	NM_001190332	385354.0	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	12.11	16.6	29.09	28.15	27.0	31.36	18.93	40.46	31.27	22.59	29.65	15.04
Merged-chr13-20133861-3	chr13	20133778	20133978	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43371.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	20.59	27.67	25.1	15.69	31.5	35.75	27.9	28.09	28.13	31.13	36.18	21.62
Merged-chr10-22732409-3	chr10	22732304	22732504	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-957.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	17.36	11.32	4.56	18.5	17.59	22.26	12.62	21.62	23.21	19.58	23.11	14.72
Merged-chr12-8509867-3	chr12	8509763	8509963	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9854.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	17.36	13.58	43.93	34.19	85.91	121.98	91.35	121.04	106.01	110.46	163.81	84.27
Merged-chr2-119476949-4	chr2	119476876	119477076	+	999.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026574, intron 1 of 35)	CpG	653.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	20.19	12.58	8.56	14.48	10.64	14.42	18.27	13.23	17.9	18.58	25.63	20.99
Merged-chr4-133774941-5	chr4	133774923	133775123	+	999.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-21412.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	16.96	29.18	21.68	18.5	24.96	24.77	11.96	15.45	28.32	26.11	25.63	13.78
Merged-chr13-75840284-2	chr13	75840198	75840398	+	999.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	412.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	15.75	14.59	8.56	13.27	17.59	21.01	14.95	17.3	9.83	6.53	8.04	7.83
Merged-chr7-99159052-3	chr7	99158914	99159114	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026384, exon 5 of 8)	exon (NM_026384, exon 5 of 8)	-17870.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	26.65	26.41	27.38	10.86	24.96	22.89	11.96	21.53	36.98	42.68	44.72	33.21
Merged-chr16-8671678-3	chr16	8671587	8671787	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	CpG	466.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	22.21	24.65	14.83	13.27	21.27	35.75	15.28	19.4	20.26	23.1	54.77	15.35
Merged-chr1-106172596-3	chr1	106172478	106172678	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	709.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	9.69	18.36	23.96	18.5	15.96	16.31	23.25	20.33	17.51	18.08	31.66	29.76
Merged-chr3-69598982-3	chr3	69598870	69599070	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020026)	promoter-TSS (NM_020026)	-10.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	23.02	14.84	17.11	16.49	25.77	31.04	20.93	19.01	30.88	25.61	41.2	25.37
Merged-chr16-11282955-3	chr16	11282852	11283052	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28507.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	35.53	29.43	42.21	37.4	22.5	16.62	22.26	53.52	35.01	17.57	31.66	15.66
Merged-chr17-36218920-3	chr17	36218839	36219039	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28788.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	34.32	26.16	39.36	44.24	18.41	21.64	18.6	25.35	24.0	19.08	18.09	20.36
Merged-chr8-83697516-3	chr8	83697411	83697611	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	1668.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	21.4	17.86	21.11	16.09	50.73	19.44	20.26	30.48	27.54	31.13	52.76	25.06
Merged-chr11-108248536-3	chr11	108248443	108248643	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	95345.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	15.34	21.38	34.8	25.74	14.32	27.59	13.62	22.01	29.7	30.63	28.14	20.36
Merged-chr12-32635215-3	chr12	32635086	32635286	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-185149.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	67.03	65.9	104.39	128.3	67.5	68.67	60.12	105.98	24.59	16.07	23.11	21.3
Merged-chr15-97520173-3	chr15	97520057	97520257	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	185665.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	32.71	13.08	30.8	47.46	38.86	31.67	65.77	67.18	19.08	12.55	43.72	20.68
Merged-chr1-87813793-3	chr1	87813697	87813897	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009118, intron 4 of 15)	intron (NM_009118, intron 4 of 15)	10117.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	19.79	16.6	17.11	21.72	20.05	41.08	29.9	47.27	35.01	23.6	30.65	20.36
Merged-chr17-85574770-1	chr17	85574670	85574870	+	999.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43626.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.42	2.77	0.57	5.63	10.64	14.42	14.95	16.09	2.56	7.53	5.02	3.13
Merged-chr13-21200208-3	chr13	21200124	21200324	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	20293.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	19.79	19.37	26.81	17.7	15.96	18.5	10.63	28.43	27.34	16.57	23.11	17.86
Merged-chr8-92875947-3	chr8	92875852	92876052	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 6 of 12)	intron (NM_001357375, intron 6 of 12)	20619.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	17.36	19.12	45.07	42.63	13.5	12.86	28.23	46.65	81.43	41.17	92.46	53.88
Merged-chr17-17393014-3	chr17	17392902	17393102	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025934, intron 9 of 9)	ID_B1|SINE|B4	-9684.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	15.75	26.16	13.69	14.08	22.5	33.55	12.95	14.16	28.72	27.11	34.17	13.78
Merged-chr5-67450352-4	chr5	67450211	67450411	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-13587.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	12.92	7.55	14.83	9.25	22.5	19.76	28.57	18.67	25.96	31.13	28.64	12.22
Merged-chr13-60628015-3	chr13	60627912	60628112	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	25801.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	14.94	3.77	23.39	18.9	35.59	33.55	65.44	62.69	25.96	17.57	40.2	12.53
Merged-chr8-72162780-3	chr8	72162695	72162895	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1595.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	15.34	13.08	22.82	14.48	18.0	12.54	12.29	18.28	31.08	22.09	33.67	28.82
Merged-chr11-76202006-3	chr11	76201920	76202120	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	-36.0	NM_027773	116972.0	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	29.88	24.4	19.4	10.46	34.36	50.17	21.26	38.33	36.39	26.11	51.25	18.8
Merged-chr17-28800850-3	chr17	28800710	28800910	+	999.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081315)	promoter-TSS (NM_001081315)	-316.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	25.44	16.85	20.54	13.67	28.23	27.28	19.93	12.59	24.0	12.05	20.1	15.66
Merged-chr10-44071285-3	chr10	44071195	44071395	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66449.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	21.8	27.92	14.26	21.72	27.41	19.13	18.93	25.63	27.34	24.1	30.65	16.92
Merged-chr9-78489100-3	chr9	78488981	78489181	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7357.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	31.9	25.4	18.83	11.26	11.86	47.66	25.24	21.28	47.21	41.17	44.72	29.76
Merged-chr10-81482698-3	chr10	81482589	81482789	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311124)	promoter-TSS (NM_001311124)	20.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	22.21	17.86	19.4	9.65	20.86	7.53	6.31	15.25	21.05	31.13	23.62	15.66
Merged-chr11-71855341-3	chr11	71855248	71855448	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84774.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	24.23	21.13	14.83	30.57	20.86	18.81	19.6	33.31	28.13	4.02	16.08	16.6
Merged-chr4-155217562-3	chr4	155217478	155217678	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	4957.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	14.54	11.32	16.54	24.53	40.09	36.69	26.57	40.79	23.8	33.64	36.68	28.51
Merged-chr2-32089785-3	chr2	32089667	32089867	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5098.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	27.05	15.85	16.54	22.93	27.82	16.93	12.95	17.27	33.04	36.65	27.64	20.05
Merged-chr8-80874355-3	chr8	80874259	80874459	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	6120.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	52.09	49.05	41.07	25.34	33.96	42.65	45.84	48.65	22.03	11.55	34.17	18.17
Merged-chr5-67608324-3	chr5	67608219	67608419	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	436.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	19.79	13.83	21.68	15.28	18.41	15.05	22.92	19.18	22.03	20.59	24.62	14.41
Merged-chr10-93425869-3	chr10	93425776	93425976	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7231.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	27.46	26.41	30.8	33.38	37.23	35.43	15.28	39.25	35.8	21.09	35.17	17.86
Merged-chr11-21540274-3	chr11	21540152	21540352	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29072.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	14.94	13.58	27.95	30.97	16.77	25.4	14.62	23.02	15.14	20.59	37.18	20.05
Merged-chr10-96185849-3	chr10	96185748	96185948	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40359.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.06	11.07	19.4	19.71	31.09	35.12	22.26	24.84	19.67	25.11	38.19	16.6
Merged-chr2-101797402-3	chr2	101797318	101797518	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	CpG	289.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	22.61	20.37	16.54	11.26	32.32	23.2	17.61	20.38	37.17	39.67	21.1	13.78
Merged-chr10-99203397-3	chr10	99203287	99203487	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59844.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	26.65	19.87	19.97	25.74	21.27	23.2	12.95	16.32	18.29	18.58	19.09	16.92
Merged-chr11-70239982-3	chr11	70239873	70240073	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173742)	promoter-TSS (NM_173742)	-121.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	17.77	34.71	25.1	22.52	18.82	33.55	25.24	23.13	36.19	40.67	25.12	23.49
Merged-chr11-21036385-3	chr11	21036288	21036488	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54936.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	41.59	39.49	17.68	28.15	24.55	47.98	13.62	15.73	39.34	30.63	36.18	20.68
Merged-chr19-29047944-3	chr19	29047852	29048052	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-50.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	10.5	26.41	30.23	30.57	20.86	29.48	21.59	22.63	12.19	20.08	22.11	13.16
Merged-chr13-119597776-3	chr13	119597699	119597899	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26020.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	13.73	19.87	5.13	22.52	14.73	13.48	18.93	24.17	32.65	26.11	22.61	20.99
Merged-chr9-41070988-4	chr9	41070848	41071048	+	999.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	8558.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	13.73	23.14	21.68	26.55	13.09	21.32	13.95	18.42	24.39	17.57	17.08	13.16
Merged-chrX-9272664-3	chrX	9272551	9272751	+	999.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023500)	promoter-TSS (NM_023500)	-133.0	NM_023500	22439.0	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	18.98	17.36	13.69	25.74	22.91	21.95	20.26	25.68	17.31	16.07	27.13	10.02
Merged-chr5-115491942-3	chr5	115491816	115492016	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7432.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	25.84	20.37	28.52	17.29	35.18	31.98	33.22	29.19	23.6	15.06	23.62	13.78
Merged-chr14-122056947-3	chr14	122056833	122057033	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22259.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	24.63	23.14	17.11	7.64	19.64	47.98	19.6	12.17	25.18	24.1	20.6	5.64
Merged-chr2-177957303-3	chr2	177957216	177957416	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282028)	promoter-TSS (NM_001282028)	-28.0	NM_001190302	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	15.34	15.85	23.39	22.52	40.91	34.49	24.58	22.51	43.07	21.09	60.3	16.29
Merged-chr4-150594513-3	chr4	150594413	150594613	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	URR1B|DNA|hAT-Charlie	57661.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	27.05	15.59	18.25	21.72	27.82	26.03	9.97	22.54	32.65	25.11	22.11	16.29
Merged-chr17-21679438-3	chr17	21679334	21679534	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	-443.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	16.56	13.83	20.54	21.32	20.86	31.36	5.65	22.04	39.53	48.2	47.23	26.0
Merged-chr6-99540845-3	chr6	99540753	99540953	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19860.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	20.59	15.59	21.68	33.38	14.32	19.44	21.59	23.86	21.24	19.08	49.75	16.29
Merged-chr11-80476784-3	chr11	80476694	80476894	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009871)	promoter-TSS (NM_009871)	-229.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	46.03	46.53	28.52	22.52	38.46	41.71	26.57	32.07	35.99	40.17	36.18	14.41
Merged-chr3-115682527-3	chr3	115682438	115682638	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	32517.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	28.27	18.86	12.55	39.42	39.27	51.11	31.89	42.79	39.34	40.17	60.3	29.13
Merged-chr6-55016326-3	chr6	55016190	55016390	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-21711.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	23.42	13.58	17.11	9.65	18.82	13.17	23.58	27.7	11.8	19.08	16.58	8.77
Merged-chr2-178416670-3	chr2	178416568	178416768	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081289, exon 2 of 4)	5' UTR (NM_001081289, exon 2 of 4)	2134.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	20.59	14.84	44.5	43.84	23.73	33.24	36.54	53.8	26.75	17.57	39.19	14.72
Merged-chr13-110941822-3	chr13	110941748	110941948	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38002.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	12.92	11.07	29.09	20.51	45.41	53.93	64.44	70.99	63.14	54.73	64.82	37.91
Merged-chr19-21461398-3	chr19	21461283	21461483	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	L1MB5|LINE|L1	11278.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	21.8	20.12	16.54	37.81	53.59	53.93	55.14	72.22	42.68	41.17	49.75	31.95
Merged-chr6-51471048-3	chr6	51470959	51471159	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355002)	promoter-TSS (NM_001355002)	-193.0	NM_001355002	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	11.31	15.85	9.13	10.05	18.0	15.05	19.6	13.29	17.9	21.59	18.59	16.6
Merged-chr18-52684439-3	chr18	52684330	52684530	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9249.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	17.77	11.82	17.68	37.81	45.82	20.7	36.87	27.03	43.86	36.65	37.69	27.57
Merged-chr1-157553243-3	chr1	157553140	157553340	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	27070.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	22.61	19.62	22.82	19.31	16.36	29.16	13.95	19.54	29.5	18.08	41.71	12.84
Merged-chr6-70797955-3	chr6	70797829	70798029	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5754.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	10.9	21.13	12.55	18.9	10.64	13.17	15.61	11.75	7.67	13.05	21.61	14.72
Merged-chr19-36834783-3	chr19	36834682	36834882	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163635, intron 1 of 26)	CpG	550.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	14.54	18.86	20.54	13.27	14.32	15.99	29.56	24.73	31.27	18.58	18.59	12.53
Merged-chr12-24498649-3	chr12	24498496	24498696	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028341)	promoter-TSS (NR_028341)	15.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	14.13	21.88	16.54	21.32	24.96	25.09	24.58	18.48	19.67	30.63	31.66	20.05
Merged-chr16-55637013-3	chr16	55636883	55637083	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142252.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	19.79	23.9	31.95	13.67	22.5	20.38	12.29	23.22	20.46	20.59	15.58	8.46
Merged-chr4-46534695-3	chr4	46534625	46534825	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029077, intron 1 of 5)	intron (NM_029077, intron 1 of 5)	-1176.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	18.57	16.35	25.67	17.29	21.27	17.56	19.27	32.13	17.51	11.55	18.09	10.34
Merged-chr4-99224963-3	chr4	99224857	99225057	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	30810.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	21.0	15.09	15.97	16.89	24.55	29.16	29.56	33.73	45.63	25.11	41.71	16.6
Merged-chr2-45111268-3	chr2	45111166	45111366	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	128.0	NR_110572	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	25.44	25.66	15.4	16.89	25.77	31.67	18.6	23.61	35.4	38.66	38.19	11.9
Merged-chr11-69340641-4	chr11	69340504	69340704	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027827)	promoter-TSS (NR_027827)	-165.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	14.54	12.83	19.97	12.87	14.73	16.62	15.61	10.21	21.05	16.57	11.05	5.95
Merged-chr11-44471188-3	chr11	44471101	44471301	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-653.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	35.13	11.32	23.39	11.66	31.5	43.27	19.27	27.67	50.55	33.14	33.16	25.69
Merged-chr7-69971633-2	chr7	69971548	69971748	+	999.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	366174.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	3.23	1.51	8.56	5.63	26.59	15.37	19.6	31.63	19.47	22.59	31.66	12.22
Merged-chr15-41832415-4	chr15	41832320	41832520	+	999.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	1462.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	25.44	27.42	22.25	31.37	19.23	19.76	38.86	28.43	21.05	13.05	29.65	24.75
Merged-chr17-86937977-3	chr17	86937872	86938072	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9915.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	13.33	12.07	27.95	18.1	20.86	27.91	19.6	36.65	25.37	20.59	25.12	12.22
Merged-chr16-33684443-3	chr16	33684325	33684525	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-41.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	37.55	34.96	18.83	23.73	18.41	21.95	12.29	27.25	30.09	34.65	31.15	13.47
Merged-chr14-54883288-3	chr14	54883193	54883393	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007537)	promoter-TSS (NM_007537)	-132.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	16.96	14.09	19.4	10.46	22.91	21.32	8.64	18.5	20.46	31.63	31.66	16.29
Merged-chr6-86593640-3	chr6	86593532	86593732	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-34542.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	16.56	35.47	21.11	12.47	27.0	42.65	15.94	28.51	48.98	47.7	34.17	38.53
Merged-chr15-27876579-3	chr15	27876456	27876656	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	149292.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	14.94	11.32	17.68	33.38	16.36	17.25	22.59	31.91	17.11	17.57	32.16	14.41
Merged-chr1-45906812-3	chr1	45906706	45906906	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18788.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	20.19	14.34	15.4	22.52	18.82	19.13	17.94	18.48	23.01	21.59	23.62	15.35
Merged-chr8-80984087-3	chr8	80983983	80984183	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	30823.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	19.38	31.19	28.52	19.31	18.0	47.35	17.61	17.19	47.99	25.61	31.15	10.34
Merged-chr4-46555898-3	chr4	46555803	46556003	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	10537.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	21.4	20.88	25.1	26.55	42.96	29.48	28.9	37.79	33.24	16.07	45.73	31.01
Merged-chr11-69095943-3	chr11	69095835	69096035	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3014.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	25.04	15.09	15.97	15.28	19.23	22.26	14.28	19.43	29.7	19.58	30.15	23.81
Merged-chr11-84818203-3	chr11	84818105	84818305	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145433, intron 2 of 4)	intron (NM_145433, intron 2 of 4)	1310.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	18.98	15.85	18.25	14.08	20.05	22.89	11.96	14.92	29.5	21.59	27.64	18.8
Merged-chr1-6215419-3	chr1	6215316	6215516	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009826, intron 1 of 23)	intron (NM_009826, intron 1 of 23)	754.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	19.38	15.09	17.68	15.69	21.27	20.7	23.92	25.09	16.33	20.59	25.12	12.22
Merged-chr19-45843622-3	chr19	45843525	45843725	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-27562.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	27.05	15.09	26.24	16.49	36.41	23.52	17.94	35.72	28.72	24.6	22.61	20.05
Merged-chr2-173352383-3	chr2	173352237	173352437	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75804.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	21.8	15.85	14.83	23.33	25.77	12.54	16.94	36.25	24.0	14.06	21.1	13.16
Merged-chr9-121642670-3	chr9	121642580	121642780	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-36.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	31.5	26.66	15.97	16.09	19.64	19.76	25.24	22.26	28.32	31.13	37.69	28.82
Merged-chr4-138068318-2	chr4	138068236	138068436	+	999.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	70182.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	33.11	17.61	47.92	41.43	8.59	3.14	2.33	4.74	17.51	22.09	31.66	10.02
Merged-chr13-93428570-2	chr13	93428451	93428651	+	999.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71257.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	10.9	6.79	25.67	15.69	11.05	15.05	16.28	16.01	1.57	6.03	9.04	2.82
Merged-chr4-16119613-3	chr4	16119505	16119705	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44038.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	18.57	18.11	25.67	19.71	16.36	15.05	19.93	29.38	22.23	24.1	28.64	11.9
Merged-chr5-63875066-3	chr5	63874981	63875181	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	62586.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	18.57	20.37	19.4	13.27	36.41	31.67	31.56	36.93	41.11	38.66	46.73	28.82
Merged-chr8-92855414-3	chr8	92855331	92855531	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	98.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	13.33	25.91	14.83	18.1	15.55	17.56	14.62	10.99	25.57	24.6	33.16	20.36
Merged-chr6-108702804-3	chr6	108702715	108702915	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41881.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	25.04	26.16	42.78	23.33	20.46	30.73	15.28	24.06	32.06	15.06	42.71	16.92
Merged-chr12-32292979-3	chr12	32292875	32293075	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	-84326.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	22.21	14.84	17.68	13.27	31.5	27.28	18.93	18.42	35.4	40.67	62.31	19.42
Merged-chr12-40018279-3	chr12	40018161	40018361	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	19115.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	18.98	24.4	20.54	24.13	21.68	20.7	15.28	14.86	30.29	21.59	25.63	9.4
Merged-chr4-33261408-3	chr4	33261298	33261498	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12611.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	23.82	22.39	35.37	4.83	22.09	37.63	18.27	11.44	32.85	34.65	22.11	13.47
Merged-chr15-66454147-3	chr15	66454039	66454239	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019457, exon 5 of 12)	exon (NM_019457, exon 5 of 12)	46771.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	17.77	34.71	35.94	34.99	28.23	32.93	15.28	50.61	37.37	41.67	45.22	28.19
Merged-chr2-167492408-3	chr2	167492312	167492512	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-233.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	8.88	12.32	9.7	5.63	10.23	18.19	9.97	9.39	21.24	21.09	11.05	14.72
Merged-chr13-44518388-3	chr13	44518269	44518469	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78642.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	31.09	30.43	22.82	31.37	24.55	42.02	21.59	14.66	46.03	40.67	30.65	10.65
Merged-chr15-95797802-3	chr15	95797696	95797896	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6953.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	18.57	18.61	23.96	13.67	22.5	19.13	16.28	22.12	23.21	8.03	28.14	8.46
Merged-chr8-71476652-4	chr8	71476545	71476745	+	999.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001294259)	TTS (NM_001294259)	7451.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	26.65	27.92	9.7	17.7	31.09	35.12	36.87	25.12	22.82	29.62	28.14	15.04
Merged-chr2-127378333-3	chr2	127378235	127378435	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15049.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	19.79	11.82	21.68	16.89	34.36	30.1	14.62	22.79	39.73	60.25	40.7	31.95
Merged-chr12-16875468-3	chr12	16875359	16875559	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19519.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	26.65	14.84	18.83	14.88	26.59	54.25	15.28	22.23	41.7	34.65	50.25	12.53
Merged-chr13-113606322-3	chr13	113606221	113606421	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12243.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	27.86	12.58	18.83	15.28	17.59	58.32	17.94	23.66	27.73	20.59	25.63	9.08
Merged-chr10-99460948-3	chr10	99460871	99461071	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148200.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	33.92	16.1	25.67	21.72	30.27	22.58	17.27	38.75	24.0	23.1	19.6	13.47
Merged-chr2-30782600-3	chr2	30782517	30782717	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19120.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	23.82	12.58	29.66	15.28	18.82	26.65	12.62	17.44	16.13	17.57	31.15	15.98
Merged-chr14-103349565-3	chr14	103349456	103349656	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2756.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	23.42	23.39	25.1	31.77	22.5	26.97	18.6	33.56	20.46	29.62	36.18	13.47
Merged-chr11-63020837-3	chr11	63020749	63020949	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16715.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	18.17	20.12	14.83	23.73	29.46	23.83	27.9	39.62	31.86	30.63	45.73	10.34
Merged-chr6-89311699-3	chr6	89311613	89311813	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-25988.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	27.86	30.94	50.2	27.75	20.05	30.73	21.26	36.98	27.73	14.06	25.12	17.86
Merged-chr5-124031230-3	chr5	124031143	124031343	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1017.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	23.82	13.08	23.96	23.33	25.36	20.07	22.92	28.51	35.6	24.6	31.15	24.75
Merged-chr1-36126343-2	chr1	36126249	36126449	+	999.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17964.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	4.44	1.01	0.57	2.01	18.41	18.19	38.2	36.11	27.54	16.07	32.16	24.12
Merged-chr7-88264883-3	chr7	88264804	88265004	+	999.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-13181.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	14.13	11.32	20.54	25.74	23.32	30.42	36.21	42.31	21.64	33.64	40.2	25.69
Merged-chr13-42049489-4	chr13	42049311	42049511	+	999.464294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2610.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	19.38	39.74	17.68	17.7	8.59	24.77	20.26	8.16	23.6	32.64	28.64	16.92
Merged-chr5-123138346-3	chr5	123138244	123138444	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3849.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	26.25	21.63	18.25	13.27	13.5	37.0	27.57	18.11	23.6	36.65	21.61	20.99
Merged-chr13-55418233-3	chr13	55418144	55418344	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021489, exon 14 of 14)	exon (NM_021489, exon 14 of 14)	-3012.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	32.71	37.98	21.11	20.51	29.05	33.55	13.29	15.48	30.68	16.57	37.69	14.1
Merged-chr1-118388249-3	chr1	118388163	118388363	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-795.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	16.96	17.86	26.24	19.71	18.0	19.44	20.26	17.22	29.7	17.07	32.66	12.53
Merged-chr4-116631127-3	chr4	116631023	116631223	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3172.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	14.94	17.36	30.23	19.71	16.36	44.84	23.25	20.97	29.7	25.11	49.24	25.37
Merged-chr1-128615122-3	chr1	128615027	128615227	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22828.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	25.84	13.58	15.4	16.09	35.18	26.97	32.22	43.99	27.54	24.6	21.61	14.1
Merged-chr2-153170642-3	chr2	153170548	153170748	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	9347.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	13.33	13.83	13.12	27.75	60.96	59.58	61.12	62.13	45.83	69.79	69.85	30.07
Merged-chr18-49982677-3	chr18	49982577	49982777	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	3250.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	19.79	17.61	24.53	14.88	31.09	26.97	16.94	25.57	19.67	7.53	20.6	14.1
Merged-chr18-36491761-3	chr18	36491642	36491842	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24063.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	13.73	26.66	37.65	41.83	18.0	25.09	32.55	41.92	38.55	15.06	31.66	18.8
Merged-chr15-59737409-3	chr15	59737302	59737502	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57557.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	16.96	21.38	24.53	8.85	22.5	63.34	16.28	13.85	41.5	32.13	18.09	23.81
Merged-chr15-5927982-3	chr15	5927879	5928079	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116725.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	24.23	9.81	17.11	17.29	25.36	21.01	10.63	23.27	20.06	17.57	42.21	11.59
Merged-chr4-88867559-3	chr4	88867461	88867661	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12640.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	23.42	18.36	14.26	20.91	15.55	16.62	10.96	20.86	26.16	20.59	40.2	19.11
Merged-chr18-75695356-3	chr18	75695234	75695434	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2362.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	12.92	27.92	23.39	19.71	39.68	45.78	25.24	44.72	35.8	19.08	46.23	28.51
Merged-chr8-82382491-3	chr8	82382389	82382589	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	20097.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	25.04	28.93	26.24	21.72	24.14	37.63	21.92	36.76	23.8	40.67	21.61	15.66
Merged-chr10-96901342-3	chr10	96901253	96901453	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134415.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	14.94	13.83	17.68	14.48	18.41	16.93	14.62	18.98	17.11	7.53	22.11	9.08
Merged-chr2-75720789-3	chr2	75720680	75720880	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-16117.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	42.4	58.61	37.65	14.08	63.0	75.57	31.56	22.49	87.72	82.85	67.33	32.27
Merged-chr6-113078584-3	chr6	113078464	113078664	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	925.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	22.21	20.37	18.83	10.46	13.91	26.65	15.94	10.85	43.07	43.68	27.64	13.78
Merged-chr5-24039046-3	chr5	24038951	24039151	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8361.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	14.94	12.32	21.11	23.33	27.82	28.22	18.27	30.48	32.45	19.08	27.64	17.54
Merged-chr9-16238143-3	chr9	16238031	16238231	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	Lx10|LINE|L1	140100.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	11.71	14.09	23.39	13.27	18.41	13.8	15.94	28.04	39.53	23.1	28.64	20.68
Merged-chr14-34769198-3	chr14	34769116	34769316	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50920.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	23.02	12.83	17.68	13.27	19.23	24.46	23.25	22.85	19.67	18.08	20.1	16.92
Merged-chr11-50238646-3	chr11	50238589	50238789	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-157.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	29.88	10.56	16.54	23.73	38.05	37.63	36.21	32.05	31.86	40.17	30.15	14.72
Merged-chr8-120487999-5	chr8	120487937	120488137	+	999.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-829.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	12.52	19.12	9.7	10.46	18.0	15.05	12.62	7.74	18.1	19.58	20.6	7.83
Merged-chr10-20834744-3	chr10	20834664	20834864	+	999.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-109686.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	15.75	21.13	13.12	34.59	21.27	38.26	15.28	33.73	30.09	36.15	38.19	40.1
Merged-chr4-118152368-5	chr4	118152286	118152486	+	999.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17440.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.67	9.56	6.85	23.33	13.5	5.64	22.92	15.56	16.33	17.57	18.09	20.68
Merged-chr3-15243876-5	chr3	15243805	15244005	+	999.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88397.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	12.92	11.57	29.09	22.52	23.32	13.8	39.53	54.5	19.08	10.04	25.12	9.4
Merged-chr12-110436904-3	chr12	110436805	110437005	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10274.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	14.54	19.37	34.23	23.33	32.32	52.05	31.89	41.97	37.57	28.12	45.22	24.75
Merged-chr9-99072725-3	chr9	99072635	99072835	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 9 of 23)	intron (NM_029094, intron 9 of 23)	-37045.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	15.34	21.13	14.83	23.33	26.59	15.99	15.61	30.5	30.49	34.65	45.73	28.82
Merged-chr19-53330279-3	chr19	53330182	53330382	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-126.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	18.17	5.28	12.55	19.31	12.68	14.42	29.56	30.48	14.55	17.57	28.64	15.66
Merged-chr6-122804647-3	chr6	122804544	122804744	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15540.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.23	13.83	15.4	22.12	24.96	22.58	8.3	14.33	20.26	22.09	24.12	14.41
Merged-chr3-87987048-3	chr3	87986951	87987151	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007529)	TTS (NM_007529)	13305.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	17.36	15.85	15.4	22.93	29.86	31.98	13.95	20.72	36.98	39.16	40.2	23.18
Merged-chr12-102333300-3	chr12	102333194	102333394	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	49653.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	16.15	14.59	17.68	23.73	24.96	23.2	23.58	35.41	24.78	11.05	34.67	20.05
Merged-chr11-48809030-3	chr11	48808942	48809142	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145377, intron 3 of 5)	intron (NM_145377, intron 3 of 5)	5903.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	29.07	11.82	21.68	37.0	23.73	12.86	11.29	35.97	15.14	14.06	25.63	12.84
Merged-chr7-116457936-3	chr7	116457838	116458038	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14480.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	15.75	16.85	17.68	20.91	29.05	23.83	16.28	31.07	28.91	20.59	24.12	17.23
Merged-chr18-76933492-3	chr18	76933383	76933583	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025409, intron 1 of 2)	LTR10_RN|LTR|ERVK	3456.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	16.56	13.83	19.4	18.9	15.14	22.58	14.62	27.67	19.28	18.58	30.65	12.22
Merged-chr15-66820455-3	chr15	66820339	66820539	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	11390.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	19.38	23.64	18.83	20.11	18.0	20.07	22.92	17.92	26.55	20.08	27.13	15.04
Merged-chr2-153147894-3	chr2	153147806	153148006	+	999.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13395.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	23.42	13.58	15.4	20.91	13.91	24.77	11.96	15.76	26.95	25.61	32.16	15.98
Merged-chr2-136915258-2	chr2	136915152	136915352	+	999.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15901.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	7.67	13.33	2.85	4.42	14.73	17.56	12.29	20.44	20.06	29.62	21.61	11.59
Merged-chr16-24599960-3	chr16	24599852	24600052	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	70638.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	31.5	27.67	14.26	21.32	45.82	35.75	22.92	30.98	28.72	32.64	28.64	10.96
Merged-chr9-21321578-3	chr9	21321481	21321681	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	862.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	14.13	16.1	26.24	27.75	25.77	28.22	40.86	39.42	30.09	37.16	46.23	26.94
Merged-chrX-159912290-3	chrX	159912199	159912399	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	MIRb|SINE|MIR	-30394.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	20.59	5.03	6.28	16.89	18.41	30.42	23.25	37.54	17.7	23.1	20.6	15.35
Merged-chr11-98023312-3	chr11	98023212	98023412	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-685.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	19.79	23.39	19.97	12.07	20.05	26.65	6.31	21.03	31.27	25.11	30.15	15.66
Merged-chr2-83714966-3	chr2	83714872	83715072	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9425.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	22.21	16.85	15.4	18.9	33.55	20.7	22.59	18.2	31.08	32.13	31.15	25.69
Merged-chr4-131874106-3	chr4	131873991	131874191	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020587, intron 1 of 5)	CpG	452.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	15.75	23.14	15.4	23.73	18.41	19.13	11.96	22.91	32.06	34.65	26.63	15.98
Merged-chrX-143052137-3	chrX	143052042	143052242	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-47452.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	8.08	16.1	17.68	17.29	23.32	21.64	10.96	23.36	23.21	18.58	26.63	23.49
Merged-chr15-86166392-3	chr15	86166285	86166485	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-19343.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	21.4	9.56	29.66	28.15	25.77	34.18	39.86	65.13	45.24	24.1	78.89	26.94
Merged-chr16-55801781-3	chr16	55801671	55801871	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20367.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	15.34	10.82	25.67	17.29	35.18	23.2	32.55	33.56	29.5	28.62	27.13	13.47
Merged-chr17-34589950-3	chr17	34589816	34590016	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134116, exon 1 of 4)	5' UTR (NM_134116, exon 1 of 4)	110.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	18.98	14.59	19.4	16.09	14.73	20.7	20.93	18.84	15.34	15.06	17.08	16.29
Merged-chr2-32583609-3	chr2	32583533	32583733	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198191, exon 10 of 10)	3' UTR (NM_198191, exon 10 of 10)	-3445.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	37.15	27.17	18.83	21.72	36.41	50.8	15.94	27.14	44.65	49.21	58.79	31.01
Merged-chr15-74922491-3	chr15	74922395	74922595	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32556.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	27.86	14.34	20.54	25.34	6.55	22.26	17.27	20.07	24.0	22.59	18.59	16.92
Merged-chr7-132793711-1	chr7	132793611	132793811	+	999.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-6776.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.04	4.53	2.28	12.47	6.95	12.23	11.96	22.23	5.51	4.02	5.02	4.7
Merged-chr7-105767876-3	chr7	105767797	105767997	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 2 of 20)	intron (NM_001162943, intron 2 of 20)	-15662.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	16.15	15.85	14.83	19.71	18.41	19.13	21.26	20.3	27.73	16.57	31.15	13.16
Merged-chr2-145888142-3	chr2	145888054	145888254	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028724)	TTS (NM_028724)	-15087.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	16.15	11.07	18.83	19.31	32.73	25.09	28.57	54.79	30.88	40.67	55.27	30.07
Merged-chr1-181170508-3	chr1	181170375	181170575	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19544.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	12.52	19.62	36.51	27.75	12.68	20.07	28.9	22.01	11.01	18.58	20.1	9.71
Merged-chr6-42376390-3	chr6	42376294	42376494	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-3126.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	31.5	36.47	33.66	34.99	17.18	19.13	30.23	27.31	22.82	16.07	28.64	12.84
Merged-chr4-140702651-3	chr4	140702535	140702735	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173867, intron 2 of 12)	CpG-10575	1162.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	33.92	25.91	15.97	17.7	30.27	26.65	18.6	15.42	40.32	46.19	20.1	20.36
Merged-chr19-55227849-3	chr19	55227748	55227948	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 7 of 20)	intron (NM_001081076, intron 7 of 20)	13388.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	15.34	24.4	47.35	15.69	31.5	26.34	30.89	32.52	41.11	33.14	39.7	17.86
Merged-chr9-20459903-3	chr9	20459788	20459988	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011753, intron 1 of 9)	CpG	272.0	NM_011753	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	20.19	17.86	19.4	20.51	15.55	25.71	27.24	23.3	18.1	25.61	24.12	13.16
Merged-chr4-45981211-3	chr4	45981104	45981304	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	8373.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	23.42	20.88	21.68	21.72	31.09	37.63	15.94	25.79	13.57	17.07	18.09	12.84
Merged-chr11-116628988-3	chr11	116628912	116629112	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1993.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	23.82	12.83	15.4	13.67	24.14	33.55	14.62	21.93	19.47	24.1	9.04	14.1
Merged-chr4-62641037-3	chr4	62640832	62641032	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	21260.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	8.88	6.29	1.14	13.67	5.73	10.66	7.64	7.43	6.1	8.03	16.58	8.46
Merged-chr16-87638288-3	chr16	87638204	87638404	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_Mur|LTR|ERVK	-60650.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	31.5	17.1	21.11	17.7	21.27	29.16	25.58	33.11	21.05	19.58	33.67	15.04
Merged-chr2-93459490-3	chr2	93459409	93459609	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2342.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	20.59	22.13	23.96	8.04	18.41	42.33	21.92	11.3	36.78	13.56	15.07	3.45
Merged-chr9-108578697-3	chr9	108578610	108578810	+	999.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-40.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	18.17	25.15	22.82	21.32	27.0	25.4	17.94	28.35	24.98	20.59	30.15	9.71
Merged-chr6-83637869-3	chr6	83637780	83637980	+	999.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	18236.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	20.19	15.09	34.23	57.51	47.05	36.06	74.41	94.93	38.55	14.56	68.34	42.29
Merged-chr11-121741100-3	chr11	121740999	121741199	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38672.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	25.44	14.09	37.65	23.33	31.09	28.22	22.26	30.64	40.12	50.71	31.15	25.37
Merged-chr7-127008904-3	chr7	127008801	127009001	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5693.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	16.15	20.63	21.68	16.49	30.27	43.59	20.93	30.81	24.59	48.2	33.67	13.47
Merged-chr6-38692235-3	chr6	38692133	38692333	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	29164.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	20.19	20.37	20.54	15.28	23.32	17.56	20.93	32.05	13.57	6.53	21.61	15.04
Merged-chr6-148990083-3	chr6	148989969	148990169	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43599.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	20.59	15.34	15.4	28.96	17.18	22.58	10.96	11.97	31.86	25.11	33.16	19.74
Merged-chr17-56031124-3	chr17	56031027	56031227	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	5510.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	25.44	13.33	22.25	20.91	26.18	26.03	36.54	47.47	13.57	8.03	18.59	13.78
Merged-chr13-119327082-3	chr13	119327002	119327202	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	81909.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	15.75	12.07	12.55	19.71	21.27	20.7	29.23	38.69	26.95	17.57	42.71	22.56
Merged-chr4-133574780-3	chr4	133574747	133574947	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172876, exon 1 of 7)	exon (NM_172876, exon 1 of 7)	102.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	22.61	22.64	10.84	19.31	22.5	21.64	14.62	18.03	31.27	25.61	26.63	19.42
Merged-chr2-160136994-3	chr2	160136895	160137095	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120342.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	14.54	19.87	27.95	13.67	29.46	47.04	21.26	12.9	30.68	25.61	19.09	20.68
Merged-chrX-164382136-3	chrX	164382028	164382228	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010216, intron 1 of 6)	intron (NM_010216, intron 1 of 6)	8606.0	NM_010216	14205.0	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	20.59	18.61	27.95	12.87	36.41	35.75	21.26	32.5	36.98	31.13	67.84	22.56
Merged-chr6-148539021-3	chr6	148538916	148539116	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75293.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	18.17	13.33	35.94	30.16	38.05	17.56	21.59	41.69	26.36	21.59	38.69	10.96
Merged-chr5-102056093-3	chr5	102055986	102056186	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	13835.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	21.0	15.34	5.7	15.28	10.64	14.11	20.26	19.63	27.14	14.56	21.1	17.86
Merged-chr19-61084661-3	chr19	61084557	61084757	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56183.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	18.57	15.34	19.97	21.72	22.5	21.01	19.27	21.84	16.33	18.58	23.11	12.84
Merged-chr3-40950798-3	chr3	40950694	40950894	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040399, intron 1 of 9)	CpG-9127	163.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	12.11	11.82	22.25	14.08	18.0	15.05	7.31	20.13	16.72	9.54	22.11	15.04
Merged-chr11-68458330-3	chr11	68458401	68458601	+	999.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	26376.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	10.09	3.77	3.42	3.62	17.59	8.78	19.93	3.79	9.64	20.59	8.04	5.33
Merged-chr11-106614453-3	chr11	106614354	106614554	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1524.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	27.86	14.34	29.09	24.53	35.59	20.7	15.61	37.51	32.26	16.57	39.19	28.19
Merged-chr6-101555396-3	chr6	101555308	101555508	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177511.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	21.0	10.82	35.37	28.56	63.82	68.67	57.47	68.69	47.4	82.35	67.33	40.72
Merged-chr15-73060256-3	chr15	73060143	73060343	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	961.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	25.84	19.87	15.97	13.27	36.0	19.13	20.93	25.12	26.95	21.59	28.64	32.27
Merged-chr9-86477026-3	chr9	86476929	86477129	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 1 of 38)	L1MB2|LINE|L1	9875.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	15.34	11.32	21.68	16.49	15.96	18.5	20.26	28.43	18.29	7.53	30.65	17.54
Merged-chr11-63014860-3	chr11	63014752	63014952	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-10718.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	15.75	17.36	19.4	34.99	23.32	26.65	14.95	29.78	37.37	36.15	61.3	31.01
Merged-chr8-11459204-3	chr8	11459093	11459293	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-18736.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	15.75	11.32	33.66	16.09	22.5	26.34	64.77	56.69	17.31	15.06	36.18	14.1
Merged-chr4-6369189-3	chr4	6369082	6369282	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3502.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	14.13	15.59	21.68	34.59	23.73	18.5	24.91	34.46	21.83	23.1	35.68	16.92
Merged-chr13-74759358-3	chr13	74759271	74759471	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301153, intron 3 of 31)	intron (NM_001301153, intron 3 of 31)	11365.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	13.73	15.59	29.09	22.12	20.46	24.46	22.26	38.55	41.89	25.11	41.71	38.85
Merged-chr4-141541023-3	chr4	141540921	141541121	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2424.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	16.56	14.34	21.11	12.87	38.86	35.75	24.25	20.05	23.8	16.07	26.63	10.02
Merged-chr2-31127397-3	chr2	31127296	31127496	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	RMER10A|LTR|ERVL	14612.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	22.21	14.84	17.11	15.28	20.05	17.56	12.29	20.78	33.04	18.08	31.15	13.78
Merged-chr2-170324912-3	chr2	170324811	170325011	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-31450.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	21.0	13.33	14.26	18.9	14.32	14.11	10.96	15.14	24.59	19.58	12.56	20.36
Merged-chr1-53848286-3	chr1	53848183	53848383	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	LTR31|LTR|ERV1	-1141.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	17.36	11.82	18.83	24.13	37.64	16.93	15.28	36.36	21.44	18.08	31.15	18.8
Merged-chr14-76328937-3	chr14	76328839	76329039	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77477.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	27.05	14.34	26.24	34.19	23.32	18.5	25.24	26.33	47.99	32.64	54.77	15.98
Merged-chr7-29134891-3	chr7	29134791	29134991	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145149)	promoter-TSS (NM_145149)	-42.0	NM_001174155	233046.0	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	15.75	23.9	19.97	14.48	38.05	31.67	24.25	16.46	45.04	20.59	38.19	16.92
Merged-chr12-111471332-3	chr12	111471223	111471423	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	14500.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	56.13	49.3	34.8	6.03	47.87	92.82	26.91	13.04	52.52	60.75	36.68	10.96
Merged-chr7-25477678-3	chr7	25477614	25477814	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039187)	promoter-TSS (NM_001039187)	-89.0	NM_001039187	26365.0	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	10.9	22.89	21.68	23.73	35.18	35.43	28.57	32.5	22.62	22.59	27.13	17.86
Merged-chr14-43922315-3	chr14	43922197	43922397	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053112)	TTS (NM_053112)	1071.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	29.88	24.4	30.23	49.87	21.68	26.34	21.26	9.67	25.77	41.17	44.22	17.23
Merged-chr9-97105591-3	chr9	97105508	97105708	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	5433.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	24.23	34.71	15.97	20.11	24.96	17.87	18.27	20.8	22.82	18.58	28.14	13.47
Merged-chr15-73177333-3	chr15	73177235	73177435	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	L3b|LINE|CR1	7612.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	13.33	11.32	17.68	15.69	18.41	23.2	17.94	30.22	23.41	25.61	36.68	22.87
Merged-chr6-50261781-3	chr6	50261700	50261900	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018769)	promoter-TSS (NM_018769)	-31.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	22.21	21.88	34.8	29.36	33.14	17.87	24.91	41.24	20.46	28.12	43.72	16.92
Merged-chr6-100800645-3	chr6	100800521	100800721	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-33017.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	30.28	22.13	19.97	16.89	43.36	47.98	35.21	44.13	59.79	55.73	34.67	30.07
Merged-chr2-132027620-3	chr2	132027541	132027741	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	2347.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	23.42	20.12	12.55	17.29	40.09	46.72	24.58	31.63	35.99	39.67	55.78	24.12
Merged-chr18-80554705-3	chr18	80554553	80554753	+	999.095215	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10107.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	13.73	11.07	6.28	17.7	8.18	9.72	13.29	21.93	12.98	17.07	17.08	15.35
Merged-chr8-22861706-3	chr8	22861598	22861798	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 2 of 17)	intron (NM_001081149, intron 2 of 17)	2159.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	22.61	20.88	24.53	21.72	13.5	13.48	13.95	31.07	26.36	17.57	24.12	15.98
Merged-chr12-105031446-3	chr12	105031351	105031551	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028576)	promoter-TSS (NR_028576)	-102.0	NR_028576	100306943.0		NR_028576	ENSMUSG00000088789	Scarna13	U93	small Cajal body-specific RNA 1	ncRNA	20.59	21.63	26.81	15.28	24.55	44.53	20.59	32.83	36.39	23.1	31.66	11.9
Merged-chr8-45331024-3	chr8	45330933	45331133	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2163.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	24.23	20.63	18.25	12.47	16.36	27.91	9.63	20.86	30.29	31.13	32.16	15.66
Merged-chr1-144215473-3	chr1	144215373	144215573	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33631.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	14.13	27.67	27.38	21.72	36.0	43.27	18.93	40.6	41.89	34.14	25.12	15.35
Merged-chr19-55654615-3	chr19	55654529	55654729	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	47575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	14.54	6.04	19.4	17.29	15.55	21.95	8.97	15.93	35.99	30.13	47.23	13.47
Merged-chr12-52328234-3	chr12	52328161	52328361	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152348.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	20.59	7.55	15.97	17.29	29.05	26.34	24.58	29.78	34.42	29.12	27.64	17.23
Merged-chr14-51093639-3	chr14	51093543	51093743	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	-2357.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	25.04	12.83	29.66	20.91	16.36	15.99	9.63	27.42	32.26	35.15	39.7	22.56
Merged-chr19-10948380-3	chr19	10948228	10948428	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023731, exon 1 of 4)	exon (NM_023731, exon 1 of 4)	938.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	10.09	15.34	22.82	8.04	13.09	15.68	17.27	8.13	23.41	22.09	29.65	14.72
Merged-chr8-104602910-3	chr8	104602836	104603036	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252628, intron 17 of 17)	intron (NM_001252628, intron 17 of 17)	11468.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	25.44	20.88	20.54	20.11	39.68	28.54	18.6	32.36	24.0	25.61	39.19	9.4
Merged-chr4-132382506-3	chr4	132382391	132382591	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161797, intron 3 of 12)	B3|SINE|B2	-28805.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	22.61	15.59	23.96	19.31	28.64	21.01	19.93	28.23	28.91	21.59	17.59	11.28
Merged-chr11-116162380-1	chr11	116162280	116162480	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172571, intron 5 of 30)	intron (NM_172571, intron 5 of 30)	5798.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	13.73	11.82	21.11	33.78	0.0	0.0	0.66	0.0	0.39	1.0	1.0	0.0
Merged-chr2-6647190-1	chr2	6647090	6647290	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 5 of 15)	Tigger7|DNA|TcMar-Tigger	74472.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	1.62	14.09	9.13	2.41	5.32	4.08	0.0	0.95	19.08	13.05	9.04	3.13
Merged-chr1-106371815-1	chr1	106371715	106371915	+	999.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	intron (NM_133821, intron 12 of 16)	174816.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	2.42	1.51	6.85	0.0	3.27	0.63	7.97	10.79	2.56	2.01	4.02	2.19
Merged-chr8-105374804-3	chr8	105374714	105374914	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-567.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	15.34	17.1	28.52	16.89	29.46	41.08	26.91	25.46	39.34	34.14	59.8	36.03
Merged-chr18-12740710-3	chr18	12740561	12740761	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-694.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	13.33	12.83	28.52	7.24	31.09	15.37	23.92	47.3	37.17	35.65	63.82	27.88
Merged-chr18-65497159-3	chr18	65497037	65497237	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66140.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	31.5	25.66	48.49	43.84	45.41	35.43	35.54	53.75	24.19	23.6	20.6	26.0
Merged-chr18-32311969-3	chr18	32311886	32312086	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65231.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	15.75	30.18	23.39	16.09	14.73	31.04	13.29	19.46	32.85	40.17	34.17	14.41
Merged-chr5-102481572-3	chr5	102481457	102481657	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029270, exon 1 of 10)	5' UTR (NM_029270, exon 1 of 10)	166.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	12.52	24.65	17.68	18.5	26.18	37.0	28.57	21.81	33.63	32.13	29.65	16.29
Merged-chr7-24586999-1	chr7	24586899	24587099	+	999.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023154)	promoter-TSS (NM_023154)	-544.0	NM_023154	66071.0	Mm.29553	NM_023154	ENSMUSG00000064254	Ethe1	0610025L15Rik|Hsco	ethylmalonic encephalopathy 1	protein-coding	3.23	2.26	2.85	7.24	3.68	5.02	7.97	10.99	7.87	6.03	8.04	4.39
Merged-chr15-6578124-3	chr15	6578024	6578224	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1723.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	29.88	25.91	26.81	13.67	35.18	41.08	19.93	35.5	36.39	34.65	48.74	12.84
Merged-chr6-88033697-3	chr6	88033605	88033805	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	11312.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	21.4	16.35	20.54	22.52	19.23	17.87	10.63	22.57	23.01	20.59	28.64	15.04
Merged-chr11-34034972-3	chr11	34034874	34035074	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MER3|DNA|hAT-Charlie	-11954.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	17.77	33.2	19.4	3.22	27.82	41.71	18.93	12.9	28.91	33.14	26.63	12.53
Merged-chr7-27302346-1	chr7	27302246	27302446	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31302.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	1.51	1.14	4.83	4.91	2.51	0.66	2.47	15.93	17.57	9.55	5.01
Merged-chr12-24831596-3	chr12	24831527	24831727	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	28.0	NM_001083341	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	21.8	24.15	13.12	36.6	22.91	35.75	30.89	36.76	14.75	14.06	16.08	16.29
Merged-chr11-107335313-3	chr11	107335193	107335393	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	135427.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.86	3.52	17.68	19.71	19.64	22.58	22.92	22.82	23.01	22.09	19.6	19.11
Merged-chr14-21657536-1	chr14	21657436	21657636	+	999.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 12 of 16)	intron (NM_017479, intron 12 of 16)	57040.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	4.44	4.53	5.7	11.26	3.27	5.02	9.63	8.92	0.2	1.0	4.02	2.19
Merged-chr14-17905794-1	chr14	17905694	17905894	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-75850.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.63	3.77	10.27	6.44	6.55	4.08	4.65	12.56	9.83	6.03	17.08	10.96
Merged-chr18-80005120-3	chr18	80005022	80005222	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41773.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	19.38	13.58	15.4	18.5	23.32	24.15	13.95	24.39	29.7	24.1	58.29	11.59
Merged-chr1-172504086-1	chr1	172503986	172504186	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	(GGGTG)n|Simple_repeat|Simple_repeat	3840.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.81	1.01	0.57	1.21	2.86	0.0	1.99	2.27	6.1	3.01	6.03	1.57
Merged-chr19-23758900-4	chr19	23758774	23758974	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-2.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	18.57	18.86	17.68	29.76	24.96	23.2	26.91	28.71	23.01	28.12	37.18	13.16
Merged-chr1-173423072-3	chr1	173422982	173423182	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	2478.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	15.34	16.6	23.39	8.45	28.64	42.65	10.96	24.03	40.91	37.16	36.68	17.23
Merged-chr13-76056429-3	chr13	76056313	76056513	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	583.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	18.17	15.59	27.38	14.08	11.86	19.76	17.94	22.85	19.47	10.54	20.1	11.28
Merged-chr17-62527639-3	chr17	62527504	62527704	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	353713.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	10.9	20.12	16.54	12.47	18.41	45.47	15.61	18.45	32.65	31.63	21.61	23.49
Merged-chr12-3780492-3	chr12	3780390	3780590	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26490.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	14.13	12.07	14.83	21.32	25.36	26.03	12.29	18.67	18.69	14.06	20.1	17.23
Merged-chr11-120957941-3	chr11	120957844	120958044	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030696, exon 6 of 6)	exon (NM_030696, exon 6 of 6)	8877.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	19.38	18.61	15.97	20.51	13.91	15.37	7.64	16.74	17.9	19.08	18.59	15.98
Merged-chr11-97988907-3	chr11	97988781	97988981	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152188)	TTS (NR_152188)	-2435.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	18.17	16.6	11.41	22.93	19.64	29.48	15.61	16.12	34.22	24.1	31.66	37.91
Merged-chr9-45953609-3	chr9	45953499	45953699	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152206)	promoter-TSS (NR_152206)	-387.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	29.88	21.63	24.53	30.97	42.55	26.65	27.24	35.89	24.0	19.08	27.64	26.0
Merged-chr4-63408898-3	chr4	63408776	63408976	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5431.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	38.36	20.12	13.69	25.34	16.77	39.51	17.61	16.65	36.78	36.15	48.74	21.3
Merged-chr5-105627290-3	chr5	105627204	105627404	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72665.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	23.02	13.83	20.54	23.33	20.86	18.81	12.29	23.05	27.14	31.63	52.26	16.6
Merged-chr3-139012579-3	chr3	139012495	139012695	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286759, intron 4 of 14)	intron (NM_001286759, intron 4 of 14)	62606.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	16.15	10.56	19.4	22.93	14.73	19.44	15.61	23.27	35.21	26.61	28.64	22.24
Merged-chr12-25648843-3	chr12	25648749	25648949	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	519675.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	18.57	14.59	18.83	22.12	14.32	17.56	12.62	20.05	23.6	8.03	25.12	5.95
Merged-chr17-32924846-3	chr17	32924729	32924929	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_130882, exon 13 of 13)	exon (NM_130882, exon 13 of 13)	-7473.0	NM_001357788	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	13.73	23.39	24.53	22.93	31.5	28.54	19.6	11.78	24.98	42.18	58.79	25.06
Merged-chr12-28654430-3	chr12	28654316	28654516	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286865, intron 3 of 7)	intron (NM_001286865, intron 3 of 7)	4814.0	NM_001286865	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	17.77	24.9	15.97	23.33	26.18	22.26	13.29	22.74	39.73	33.64	30.15	29.45
Merged-chr5-43218336-3	chr5	43218242	43218442	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-15121.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	22.21	12.32	37.08	29.36	35.18	37.32	48.83	52.09	35.99	28.62	54.77	25.06
Merged-chr10-40066653-3	chr10	40066542	40066742	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-41374.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	19.79	21.88	20.54	19.71	30.27	27.59	21.59	24.53	16.92	29.12	38.19	12.84
Merged-chrX-152016878-3	chrX	152016787	152016987	+	998.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025660)	promoter-TSS (NM_025660)	459.0	NM_019710	24061.0	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	17.77	21.13	15.97	16.49	27.82	17.87	19.27	17.86	16.33	26.11	25.12	16.6
Merged-chr11-95292166-2	chr11	95292072	95292272	+	998.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	18074.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	2.83	6.29	7.42	7.24	13.5	29.79	13.95	25.85	18.29	28.12	19.6	15.04
Merged-chr18-35918416-3	chr18	35918317	35918517	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46413.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	26.65	21.13	13.12	22.52	27.0	37.0	24.25	44.69	22.62	22.59	29.14	12.84
Merged-chr6-50378653-3	chr6	50378563	50378763	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	4174.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	20.59	20.12	16.54	20.91	20.05	13.48	12.29	12.84	40.91	29.12	27.13	20.99
Merged-chr2-181289241-3	chr2	181289146	181289346	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1280.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	24.23	19.12	49.63	28.56	27.41	26.03	32.22	35.86	50.16	17.57	51.25	45.11
Merged-chr11-98660666-3	chr11	98660552	98660752	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3699.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	34.32	15.34	33.09	23.33	27.0	33.55	12.95	20.07	28.72	31.13	39.7	28.82
Merged-chr2-142712962-3	chr2	142712868	142713068	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081133, exon 19 of 26)	exon (NM_001081133, exon 19 of 26)	188496.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	22.61	20.12	40.5	42.23	14.32	15.68	31.22	38.86	19.28	14.06	22.11	14.41
Merged-chr9-100876151-3	chr9	100876054	100876254	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	158730.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	18.98	12.32	39.93	25.74	25.77	17.25	28.9	39.79	16.92	20.59	21.1	17.54
Merged-chr7-130943388-3	chr7	130943290	130943490	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019564, intron 1 of 8)	intron (NM_019564, intron 1 of 8)	7187.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	35.94	33.45	66.74	23.73	27.82	54.88	13.29	18.59	56.45	45.19	37.69	18.48
Merged-chr11-22815409-3	chr11	22815318	22815518	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	44317.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	11.31	19.87	23.39	27.75	29.46	29.16	17.27	26.92	31.47	21.09	28.64	18.48
Merged-chr13-55727412-3	chr13	55727291	55727491	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028281)	promoter-TSS (NM_028281)	23.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	33.52	31.44	28.52	17.29	31.91	31.36	17.94	18.59	33.04	40.67	47.23	13.78
Merged-chr11-59165868-3	chr11	59165787	59165987	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2142.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	28.67	26.66	35.94	45.85	33.55	20.07	18.6	27.42	15.74	17.07	26.13	22.24
Merged-chr3-136898918-3	chr3	136898821	136899021	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228855.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	25.44	9.81	17.11	29.76	34.36	20.07	30.56	66.08	19.28	16.57	25.12	17.86
Merged-chr18-60381407-3	chr18	60381303	60381503	+	998.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021792, intron 2 of 2)	MTC|LTR|ERVL-MaLR	5374.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	19.38	15.59	14.26	17.29	17.59	11.6	9.97	19.37	19.67	16.57	18.59	11.59
Merged-chr7-24299537-3	chr7	24299447	24299647	+	998.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	2.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	15.75	15.09	15.4	19.71	17.59	22.89	26.57	20.36	20.06	12.05	24.12	15.66
Merged-chr6-108477764-2	chr6	108477648	108477848	+	998.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	L2c|LINE|L2	-11995.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	16.96	9.06	17.11	12.47	23.32	20.7	27.24	26.22	6.1	0.5	12.56	3.13
Merged-chr3-55978532-2	chr3	55978432	55978632	+	998.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 30 of 57)	L2|LINE|L2	131427.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	4.85	6.04	4.56	9.65	13.5	22.89	20.93	25.23	9.64	25.61	23.62	16.92
Merged-chr7-81571750-2	chr7	81571628	81571828	+	998.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001004185, exon 1 of 10)	exon (NM_001004185, exon 1 of 10)	436.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	12.11	16.85	17.11	13.27	13.5	15.68	7.64	13.96	22.82	15.06	14.57	11.9
Merged-chr9-48418150-1	chr9	48418050	48418250	+	998.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36194.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.0	0.75	0.0	1.21	1.23	0.31	0.0	0.36	29.31	17.07	29.65	11.9
Merged-chr6-88813110-3	chr6	88812992	88813192	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	28843.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	25.04	22.39	25.67	22.12	26.18	23.83	6.31	15.93	33.63	32.13	29.14	18.8
Merged-chr5-120605868-3	chr5	120605778	120605978	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	6711.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	15.75	14.84	19.97	13.27	25.77	21.95	10.63	20.72	25.37	28.62	25.12	17.86
Merged-chr12-16870987-3	chr12	16870854	16871054	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24024.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	21.4	27.67	26.81	41.02	26.59	26.65	23.25	29.5	40.71	42.18	43.72	10.34
Merged-chr12-28727257-3	chr12	28727154	28727354	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	23140.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	19.38	14.84	17.68	18.5	30.68	34.18	27.57	38.47	37.76	32.13	43.21	31.64
Merged-chr9-65827724-3	chr9	65827618	65827818	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172536)	promoter-TSS (NM_172536)	-154.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	17.36	32.7	23.96	21.32	34.36	29.79	20.59	20.38	48.19	46.7	18.59	11.59
Merged-chr18-9495179-3	chr18	9495080	9495280	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-45026.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	25.44	30.94	18.83	30.97	28.23	47.35	30.23	21.45	35.21	18.58	30.65	12.53
Merged-chr5-137830397-3	chr5	137830281	137830481	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	5897.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	16.15	11.82	32.52	29.76	28.23	22.89	20.26	31.74	23.01	19.58	21.61	18.17
Merged-chr5-134176604-4	chr5	134176468	134176668	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033572, exon 1 of 11)	exon (NM_033572, exon 1 of 11)	199.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	13.73	10.06	6.28	7.24	21.68	16.93	21.59	10.74	12.39	12.55	16.58	17.54
Merged-chr6-124671117-3	chr6	124671014	124671214	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	8010.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	17.77	22.13	33.09	28.56	15.14	30.1	15.61	31.49	15.14	18.08	29.14	11.9
Merged-chr13-21734269-3	chr13	21734167	21734367	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-767.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	25.84	15.59	18.83	18.9	29.46	28.22	10.3	34.35	30.88	15.57	28.14	17.54
Merged-chr15-86161122-3	chr15	86161019	86161219	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 3 of 12)	L1M4|LINE|L1	-24609.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	16.15	13.33	25.67	22.93	29.05	15.05	16.28	35.44	37.57	16.07	36.18	19.42
Merged-chr4-151108597-3	chr4	151108490	151108690	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 11 of 23)	CpG	19020.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	24.23	23.14	22.82	14.08	31.5	30.1	22.92	33.28	25.57	37.66	34.67	16.6
Merged-chr15-64057152-3	chr15	64057082	64057282	+	998.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	2582.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	18.17	14.59	19.97	15.28	27.41	15.05	18.27	21.73	15.74	10.54	13.06	14.72
Merged-chr9-32478878-3	chr9	32478778	32478978	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	62574.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	21.0	25.15	34.8	20.51	17.59	20.38	21.59	25.79	18.69	21.09	25.63	14.41
Merged-chr1-34851758-3	chr1	34851667	34851867	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1778.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	17.77	17.36	17.11	16.09	32.32	30.42	23.58	32.58	47.99	32.64	44.72	27.88
Merged-chr7-141309326-3	chr7	141309237	141309437	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	17331.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	13.73	19.37	17.11	17.29	27.82	46.1	38.86	39.28	44.84	53.22	57.79	38.53
Merged-chr4-141239519-3	chr4	141239423	141239623	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3361.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	18.98	18.11	19.4	17.7	18.41	42.02	21.26	25.79	24.78	24.6	43.21	25.37
Merged-chr6-31284673-3	chr6	31284573	31284773	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040262, intron 2 of 5)	intron (NR_040262, intron 2 of 5)	64322.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	19.38	13.33	17.68	17.29	39.27	21.95	14.62	17.55	21.44	31.63	26.63	20.99
Merged-chr2-103785949-3	chr2	103785853	103786053	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	11125.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	20.59	12.83	20.54	28.96	16.77	25.09	18.27	22.21	25.77	33.64	30.65	24.43
Merged-chr3-115985639-3	chr3	115985533	115985733	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023214, intron 5 of 10)	intron (NM_023214, intron 5 of 10)	5731.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	17.77	21.38	31.38	24.13	25.36	28.54	20.26	28.15	18.1	29.62	26.63	17.23
Merged-chr3-137865207-3	chr3	137865104	137865304	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001316995, exon 2 of 5)	exon (NM_001316995, exon 2 of 5)	717.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	23.82	25.66	18.83	22.12	13.91	22.26	13.29	12.64	22.23	24.6	25.12	20.36
Merged-chr18-70643779-3	chr18	70643692	70643892	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75500.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	17.36	12.07	17.68	18.9	18.0	18.19	14.62	19.09	23.21	30.63	28.14	14.1
Merged-chr19-46690040-3	chr19	46689938	46690138	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	132.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	13.33	23.9	28.52	18.1	21.27	30.42	27.9	19.46	22.03	20.59	15.58	22.24
Merged-chr16-33892184-3	chr16	33892096	33892296	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62531.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	17.36	20.63	13.69	21.32	16.77	21.01	15.94	25.85	14.55	26.61	31.66	20.68
Merged-chr5-130853533-3	chr5	130853451	130853651	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	404759.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	25.04	23.64	18.25	17.7	25.36	17.87	16.28	19.88	24.39	19.08	31.66	17.54
Merged-chr11-106461370-3	chr11	106461262	106461462	+	998.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	26434.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	41.19	20.88	29.09	31.77	15.55	28.22	5.65	19.91	31.27	25.61	25.63	26.31
Merged-chr17-3082999-4	chr17	3082939	3083139	+	998.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003519, intron 1 of 7)	B1_Mus1|SINE|Alu	1144.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	41.99	35.21	41.07	25.74	59.73	79.02	34.88	33.79	12.98	12.55	19.6	11.28
Merged-chr1-14823401-3	chr1	14823296	14823496	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67430.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	14.54	11.07	26.24	10.86	15.96	21.64	18.93	27.98	28.32	29.62	40.7	26.31
Merged-chr3-36857738-3	chr3	36857654	36857854	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5352.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	10.09	25.91	15.4	18.9	27.0	26.03	15.28	25.57	46.22	24.1	47.23	15.66
Merged-chr15-27659794-3	chr15	27659674	27659874	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 5 of 6)	intron (NM_198301, intron 5 of 6)	21768.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	37.15	24.4	21.68	12.87	22.91	25.4	7.97	31.85	18.49	20.59	25.12	18.48
Merged-chr9-51977600-3	chr9	51977486	51977686	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13984.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	37.15	42.76	14.83	10.86	19.64	49.54	15.61	14.66	63.14	66.28	44.22	25.69
Merged-chr3-57651711-3	chr3	57651604	57651804	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	-20.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	24.63	19.12	21.68	21.32	15.14	31.98	20.26	27.95	24.0	22.59	18.59	22.24
Merged-chr11-74576025-3	chr11	74575916	74576116	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	14142.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	16.15	12.07	16.54	15.69	25.36	18.19	24.25	30.14	20.06	16.07	31.15	15.35
Merged-chr7-122924415-3	chr7	122924297	122924497	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	46062.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	23.82	11.57	22.25	16.09	38.05	25.09	24.25	19.65	30.88	35.65	24.12	24.43
Merged-chr15-89373816-6	chr15	89373646	89373846	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111288)	promoter-TSS (NM_001111288)	72.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	12.11	23.64	13.12	20.51	16.77	19.44	23.25	16.49	19.47	18.08	23.62	22.56
Merged-chr3-136230830-3	chr3	136230724	136230924	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 6 of 16)	intron (NM_001033350, intron 6 of 16)	95242.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	33.11	18.11	36.51	15.28	40.91	34.18	19.27	28.91	33.04	41.67	11.05	30.7
Merged-chr2-38797280-3	chr2	38797198	38797398	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-12783.0	NM_001159549	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	21.0	20.37	17.68	22.12	18.82	18.81	14.28	25.77	38.16	31.13	49.75	23.18
Merged-chr7-18958128-3	chr7	18957991	18958191	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29433.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	37.15	23.9	19.97	24.53	32.32	21.32	16.94	29.5	18.88	39.67	25.12	10.96
Merged-chr1-136018039-3	chr1	136017919	136018119	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160146)	promoter-TSS (NM_001160146)	18.0	NM_025439	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	19.79	13.58	15.4	15.69	36.82	49.54	24.58	31.85	34.22	33.64	53.77	15.66
Merged-chr10-93161625-5	chr10	93161394	93161594	+	998.679993	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	CpG	618.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	30.69	35.72	15.97	14.08	32.73	45.15	19.27	15.87	39.34	32.13	43.21	25.37
Merged-chr2-84627434-3	chr2	84627343	84627543	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22037.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	15.75	13.83	26.24	15.28	30.27	21.64	33.22	33.73	20.46	15.06	25.12	10.65
Merged-chr12-73880689-3	chr12	73880578	73880778	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20646.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	12.92	16.85	30.23	17.7	21.27	29.16	28.57	29.36	35.6	43.68	19.09	19.11
Merged-chr1-71798802-3	chr1	71798677	71798877	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-89335.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	6.86	12.32	7.42	12.87	21.68	22.58	13.95	14.75	24.39	25.61	36.68	23.81
Merged-chr8-108995147-3	chr8	108995048	108995248	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58288.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	25.84	18.86	16.54	39.82	40.09	34.49	15.61	33.62	26.55	35.65	31.66	13.78
Merged-chrX-12252400-5	chrX	12252283	12252483	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92028.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	13.33	15.85	17.11	17.29	22.09	18.19	20.93	16.82	13.18	12.55	23.62	14.72
Merged-chr3-83875291-3	chr3	83875191	83875391	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-33683.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	27.86	28.93	29.66	16.09	33.96	59.89	20.26	22.54	51.14	49.21	61.81	28.82
Merged-chr12-102394631-3	chr12	102394535	102394735	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 13 of 13)	intron (NM_011175, intron 13 of 13)	45178.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	15.34	14.34	19.97	26.95	32.73	15.99	21.92	49.46	28.13	25.11	33.16	30.7
Merged-chr2-75702021-3	chr2	75701920	75702120	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	2643.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	24.23	17.36	27.38	16.09	23.32	37.63	22.92	24.84	35.4	42.68	64.82	34.15
Merged-chr10-117905866-3	chr10	117905777	117905977	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19582.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	13.73	15.59	29.66	11.26	33.14	37.94	19.93	30.59	25.96	31.13	30.15	15.66
Merged-chr4-136031434-3	chr4	136031328	136031528	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9779.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	34.32	30.43	27.95	12.87	20.05	30.42	17.94	19.68	34.42	34.14	16.58	16.92
Merged-chr17-83514443-5	chr17	83514341	83514541	+	998.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-108.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	29.88	31.19	14.26	30.16	29.46	55.19	45.51	30.39	43.07	43.68	37.18	28.19
Merged-chr2-28496855-3	chr2	28496761	28496961	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139197)	promoter-TSS (NM_139197)	-30.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	21.0	11.32	17.11	20.11	36.41	20.7	19.6	18.81	28.52	15.57	23.11	19.11
Merged-chr16-49165960-3	chr16	49165856	49166056	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166210, intron 33 of 40)	intron (NM_001166210, intron 33 of 40)	108470.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	24.23	10.56	21.11	29.76	37.64	24.46	42.52	43.63	41.11	18.58	77.88	25.69
Merged-chr4-145257517-3	chr4	145257415	145257615	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-10645.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	14.54	17.36	23.39	11.66	27.0	29.16	15.28	21.08	26.55	35.15	27.13	11.59
Merged-chr11-11774179-3	chr11	11774087	11774287	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34775.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	23.02	24.4	15.4	13.67	22.5	52.99	29.23	14.52	57.04	46.19	31.66	13.16
Merged-chr3-142493678-3	chr3	142493558	142493758	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3276.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	24.63	32.7	23.96	15.28	30.68	53.31	16.94	29.92	45.04	49.71	52.76	27.88
Merged-chr4-72401414-3	chr4	72401295	72401495	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	200151.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	26.25	15.59	14.83	14.88	36.41	35.43	17.94	27.14	47.4	29.62	26.63	17.54
Merged-chr2-136921149-3	chr2	136921061	136921261	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	21810.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	12.52	15.85	9.7	25.74	28.23	34.81	33.55	50.19	23.01	39.16	57.28	19.11
Merged-chr12-69513398-3	chr12	69513302	69513502	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37852.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	12.11	22.39	42.78	22.52	19.23	31.98	16.28	26.41	54.29	31.13	41.71	29.45
Merged-chr14-76429077-3	chr14	76428969	76429169	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	13248.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	30.28	21.63	31.38	44.64	41.73	35.12	36.87	55.32	39.73	17.57	38.69	11.28
Merged-chr8-13601131-6	chr8	13601017	13601217	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 4 of 23)	L1MC|LINE|L1	-38656.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	12.11	7.55	18.83	7.64	8.18	12.23	8.64	10.79	14.55	14.56	13.57	10.34
Merged-chr8-104118078-3	chr8	104117972	104118172	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	-12199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	12.52	18.61	19.97	25.34	16.36	15.68	23.25	37.46	29.7	27.62	50.25	32.27
Merged-chr1-86233994-3	chr1	86233887	86234087	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-69234.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	14.13	14.59	22.82	23.33	20.86	25.09	18.6	43.65	23.6	21.59	27.64	14.72
Merged-chr4-122838594-3	chr4	122838505	122838705	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 1 of 8)	L2b|LINE|L2	2378.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.63	12.07	6.85	14.08	14.32	13.48	10.63	18.34	19.47	19.08	17.59	15.98
Merged-chr2-180745442-3	chr2	180745356	180745556	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20117.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	44.01	20.12	29.66	29.76	35.59	34.18	20.59	24.53	45.24	38.66	35.17	13.16
Merged-chr18-80046859-3	chr18	80046763	80046963	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053117)	promoter-TSS (NM_053117)	-32.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	26.25	14.84	28.52	17.7	26.18	34.81	30.56	25.37	19.08	20.59	45.22	15.04
Merged-chr1-106933885-3	chr1	106933785	106933985	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027971)	promoter-TSS (NM_027971)	-564.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	14.94	13.83	20.54	32.18	19.23	22.89	20.59	24.67	20.26	23.1	30.15	17.86
Merged-chr16-30510818-3	chr16	30510927	30511127	+	998.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172614)	TTS (NM_172614)	39551.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	3.63	3.52	7.42	3.62	5.32	6.9	6.98	5.21	3.34	5.02	5.02	4.07
Merged-chr5-123058989-2	chr5	123058883	123059083	+	998.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11967.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	28.67	11.57	21.68	22.52	37.23	33.87	16.94	31.12	2.75	6.03	2.01	2.82
Merged-chr17-91284117-2	chr17	91284014	91284214	+	998.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191312.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	9.69	6.54	11.41	23.33	21.68	11.92	22.59	30.14	32.45	9.54	34.17	20.36
Merged-chr16-30008710-3	chr16	30008582	30008782	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	15.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	8.88	6.54	30.8	21.72	12.27	15.05	20.59	41.92	13.96	7.53	22.11	17.86
Merged-chr8-105835511-3	chr8	105835410	105835610	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024445, intron 2 of 15)	intron (NM_024445, intron 2 of 15)	7766.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	30.69	26.16	18.25	21.72	37.64	41.71	14.95	28.85	32.26	40.67	21.1	19.11
Merged-chr12-17770771-3	chr12	17770652	17770852	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	79943.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	18.17	13.83	15.4	10.86	22.91	17.87	12.62	22.26	21.83	18.08	25.63	15.66
Merged-chr12-85437255-3	chr12	85437131	85437331	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36659.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.06	14.84	17.11	15.28	12.68	18.19	16.28	10.29	21.44	17.07	21.61	12.53
Merged-chr15-58616904-3	chr15	58616809	58617009	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201441.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	22.61	24.9	42.21	39.42	41.32	23.52	36.87	39.31	32.85	17.57	31.66	22.87
Merged-chr1-191248681-3	chr1	191248558	191248758	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24204.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	17.77	11.57	19.4	15.28	23.73	21.95	15.61	19.15	49.76	50.21	57.28	26.31
Merged-chr17-14826894-3	chr17	14826794	14826994	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	116230.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	29.88	34.46	39.36	28.96	17.59	16.62	13.29	9.0	59.4	61.26	60.3	31.64
Merged-chr19-32906250-3	chr19	32906140	32906340	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148663.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	35.13	26.91	37.65	37.81	50.32	22.89	20.26	39.95	30.49	18.08	39.19	14.41
Merged-chr6-88906919-3	chr6	88906837	88907037	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011906, intron 2 of 11)	intron (NM_011906, intron 2 of 11)	4686.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	26.25	27.92	17.68	14.88	22.5	27.28	14.62	19.09	37.96	32.13	27.13	21.3
Merged-chr8-71291041-3	chr8	71290951	71291151	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	18337.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	27.86	17.1	17.68	26.95	37.64	41.71	43.18	64.21	23.6	17.07	29.65	21.3
Merged-chr3-79161413-4	chr3	79161357	79161557	+	998.535706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15582.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	10.09	10.56	6.28	16.89	32.73	53.62	16.61	20.55	11.8	28.12	16.58	9.4
Merged-chr1-54585409-3	chr1	54585347	54585547	+	998.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27763.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	21.8	15.85	18.25	12.47	25.77	25.71	41.85	36.59	40.12	24.6	36.68	15.04
Merged-chr17-42457688-2	chr17	42457590	42457790	+	998.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	MTC|LTR|ERVL-MaLR	141090.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.0	2.01	6.85	3.22	4.09	4.08	8.64	10.26	21.64	17.57	40.2	21.62
Merged-chr14-103816803-2	chr14	103816702	103816902	+	998.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	26899.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	23.42	8.55	4.56	3.22	20.46	28.85	19.93	23.33	17.7	17.07	24.12	3.13
Merged-chr2-46360520-3	chr2	46360399	46360599	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	663894.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	16.56	8.05	13.12	24.53	13.5	15.05	21.26	24.39	24.59	18.58	39.7	19.74
Merged-chr9-74953456-2	chr9	74953336	74953536	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113283, intron 1 of 12)	intron (NM_001113283, intron 1 of 12)	383.0	NM_001113283	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	17.77	20.37	13.69	22.93	23.73	15.05	12.29	15.7	18.1	16.57	27.64	14.72
Merged-chr2-130840089-3	chr2	130840012	130840212	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311147)	promoter-TSS (NM_001311147)	33.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	18.98	23.14	14.83	21.72	31.5	29.79	18.6	28.23	26.36	35.15	20.6	23.49
Merged-chr18-35707943-3	chr18	35707839	35708039	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4795.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	23.42	14.84	15.4	26.14	19.64	28.54	15.61	26.07	22.03	15.57	20.6	16.92
Merged-chr16-91452751-3	chr16	91452657	91452857	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12347.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	16.56	13.33	22.82	21.72	22.91	23.2	29.9	36.81	28.91	17.57	23.62	23.81
Merged-chr14-20827621-3	chr14	20827507	20827707	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9055.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	27.05	26.16	25.1	18.1	18.41	33.55	14.62	15.42	58.61	28.62	51.76	26.0
Merged-chr4-43499652-3	chr4	43499556	43499756	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013377, exon 4 of 12)	5' UTR (NM_001013377, exon 4 of 12)	6291.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	27.86	13.33	17.11	22.93	15.96	17.87	12.29	15.87	16.33	19.58	24.12	13.47
Merged-chr15-79243368-3	chr15	79243262	79243462	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045558, intron 6 of 12)	intron (NM_001045558, intron 6 of 12)	11386.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	22.21	23.14	18.25	22.93	19.23	19.13	12.29	19.35	47.99	46.7	52.76	16.92
Merged-chr1-191835039-3	chr1	191834937	191835137	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13564.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	18.98	22.39	17.11	26.55	31.91	29.16	15.28	37.15	22.42	7.03	26.63	20.05
Merged-chr14-54781905-3	chr14	54781822	54782022	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016972)	promoter-TSS (NM_016972)	-36.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	15.75	16.1	17.68	13.67	13.5	14.11	11.29	16.65	21.24	16.07	29.65	13.47
Merged-chr15-62152866-3	chr15	62152763	62152963	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	66588.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	16.96	12.58	9.7	17.7	18.41	14.42	10.3	16.51	19.47	20.59	36.68	15.66
Merged-chr16-4200219-3	chr16	4200125	4200325	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	RSINE1|SINE|B4	13179.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	8.88	21.63	21.68	18.1	6.95	31.67	16.61	16.79	25.37	19.08	31.15	17.54
Merged-chr15-86206634-3	chr15	86206543	86206743	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7816.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	27.46	13.08	46.21	55.1	25.36	35.75	42.52	59.44	26.55	27.11	35.68	18.8
Merged-chr8-126833172-3	chr8	126833042	126833242	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15878.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	24.23	26.91	37.65	14.08	46.23	48.29	29.9	35.07	52.91	54.23	68.84	36.34
Merged-chr9-78587871-7	chr9	78587761	78587961	+	998.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172773, intron 1 of 10)	CpG	184.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	23.82	37.98	30.23	29.36	31.5	28.22	55.47	27.11	30.09	28.62	28.64	31.01
Merged-chr1-64616974-6	chr1	64616819	64617019	+	998.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025964, exon 1 of 3)	5' UTR (NM_025964, exon 1 of 3)	249.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	18.17	23.9	20.54	28.15	15.55	30.1	12.95	26.1	26.95	23.1	48.24	29.45
Merged-chr13-60877460-2	chr13	60877357	60877557	+	998.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13041.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.4	6.04	9.7	0.4	16.77	31.36	29.56	17.64	32.85	23.1	23.62	5.33
Merged-chr8-13757672-3	chr8	13757588	13757788	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357247)	promoter-TSS (NM_001357247)	32.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	16.56	16.35	17.68	12.07	28.23	24.77	18.27	13.37	39.73	29.62	36.68	15.35
Merged-chrX-98881291-3	chrX	98881170	98881370	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313756, intron 2 of 2)	intron (NM_001313756, intron 2 of 2)	9755.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	15.75	12.07	21.11	17.7	17.59	17.25	32.22	26.52	23.8	16.57	20.1	17.23
Merged-chr2-127792473-3	chr2	127792369	127792569	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015476)	promoter-TSS (NR_015476)	19.0	NR_015476	67885.0	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	18.98	23.39	24.53	14.88	25.36	36.06	25.91	26.05	21.05	18.58	16.58	11.59
Merged-chr10-121995592-3	chr10	121995494	121995694	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	51721.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	21.8	24.4	50.77	37.0	35.59	58.95	70.09	72.81	19.87	16.57	24.62	11.28
Merged-chr19-29675635-3	chr19	29675538	29675738	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22303.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	26.25	12.83	19.4	24.53	42.14	36.69	15.61	29.19	29.11	35.15	21.1	18.8
Merged-chr1-164405610-3	chr1	164405506	164405706	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138314, intron 13 of 13)	intron (NM_138314, intron 13 of 13)	52749.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	13.73	11.32	20.54	23.73	21.27	16.31	35.54	67.57	30.68	30.63	51.25	31.64
Merged-chr11-68867349-3	chr11	68867242	68867442	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14211.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	24.23	14.34	28.52	14.48	22.5	17.87	11.63	21.22	23.8	22.09	20.6	21.93
Merged-chr2-26962917-3	chr2	26962808	26963008	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	1478.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	22.21	18.61	22.25	19.71	16.77	36.69	9.63	16.6	31.27	11.55	42.71	23.18
Merged-chr11-96890125-3	chr11	96890018	96890218	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26396.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	17.36	13.83	26.81	18.5	13.09	15.05	11.63	17.27	26.75	16.07	18.59	17.54
Merged-chr15-13391535-3	chr15	13391437	13391637	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-217862.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	23.02	9.06	27.38	13.27	33.14	26.97	13.29	27.03	32.85	19.58	27.13	16.92
Merged-chr10-116565107-3	chr10	116565077	116565277	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	15359.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	33.92	14.09	11.98	11.26	20.05	16.93	11.63	12.17	29.11	15.06	36.68	21.93
Merged-chr10-115315029-3	chr10	115314907	115315107	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	584.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	30.69	38.99	10.27	12.07	23.32	58.32	22.59	18.25	58.42	36.65	41.71	28.51
Merged-chr11-109468358-3	chr11	109468267	109468467	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	4862.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	24.23	13.08	27.95	17.29	11.86	14.42	20.26	23.13	21.64	16.07	24.12	13.47
Merged-chr13-111489318-2	chr13	111489218	111489418	+	998.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028487, intron 1 of 12)	CpG	809.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	23.42	15.34	18.83	16.49	22.09	17.87	13.29	16.6	28.13	20.59	29.65	13.47
Merged-chr16-45377565-2	chr16	45377462	45377662	+	998.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31491.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	23.42	17.1	35.94	17.29	51.55	27.91	50.82	32.13	0.79	0.5	1.0	0.94
Merged-chr6-73470578-1	chr6	73470478	73470678	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025737)	promoter-TSS (NM_025737)	443.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	16.15	13.08	26.24	16.49	0.41	0.63	2.66	1.23	4.33	11.05	6.03	4.7
Merged-chr3-142881097-3	chr3	142881018	142881218	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178654, intron 1 of 21)	intron (NM_178654, intron 1 of 21)	886.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	15.34	13.83	13.69	9.25	11.86	10.03	12.95	19.15	24.0	24.6	13.57	15.66
Merged-chr17-73041140-3	chr17	73041060	73041260	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-66825.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	13.33	12.32	18.25	27.75	29.05	16.31	20.59	52.4	20.85	22.09	30.15	21.93
Merged-chrX-85330055-1	chrX	85329955	85330155	+	998.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	80378.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	3.63	2.26	6.28	13.67	12.68	15.05	15.94	21.7	6.29	6.03	4.02	5.01
Merged-chr19-12730631-3	chr19	12730530	12730730	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34840.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	24.23	14.59	24.53	26.95	17.18	23.83	24.25	27.93	20.26	21.09	18.59	15.98
Merged-chr3-27302537-3	chr3	27302442	27302642	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14535.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	17.36	17.1	21.68	17.7	42.14	32.93	19.27	36.48	40.91	33.14	40.2	19.42
Merged-chr5-105110527-5	chr5	105110427	105110627	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153378)	promoter-TSS (NR_153378)	-235.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	7.27	12.83	15.97	10.86	9.41	21.64	7.64	4.49	25.96	32.13	15.58	17.23
Merged-chr8-106820742-1	chr8	106820642	106820842	+	998.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173037, intron 17 of 17)	B3A|SINE|B2	-49500.0	NM_008217	15118.0	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.66	0.67	36.98	17.07	22.61	16.29
Merged-chr10-44676719-3	chr10	44676615	44676815	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-217967.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	32.71	27.67	30.8	12.47	61.37	44.21	23.58	24.42	62.15	49.21	49.24	18.17
Merged-chr16-59583766-3	chr16	59583657	59583857	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-28005.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	14.94	20.37	15.97	14.48	29.46	26.34	39.53	42.59	39.34	26.11	39.7	31.33
Merged-chr12-82223670-3	chr12	82223569	82223769	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	53653.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	16.56	17.86	18.83	21.32	17.18	14.74	9.63	19.74	17.9	22.09	30.15	19.42
Merged-chr12-80839163-3	chr12	80839051	80839251	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	48619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	29.48	20.12	16.54	26.14	14.32	12.54	17.94	24.34	28.32	32.64	23.11	17.23
Merged-chr18-12141495-3	chr18	12141379	12141579	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 6 of 12)	intron (NM_024182, intron 6 of 12)	12629.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	23.02	25.4	48.49	25.34	22.09	13.48	18.6	22.29	19.67	19.08	34.17	15.04
Merged-chrX-153723705-3	chrX	153723622	153723822	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027327, exon 1 of 4)	5' UTR (NM_027327, exon 1 of 4)	168.0	NM_027327	70123.0	Mm.146408	NM_027327	ENSMUSG00000086316	Nbdy	2210013O21Rik|AI181827|Thp5	negative regulator of P-body association	protein-coding	13.73	13.08	17.11	16.49	19.64	13.17	19.27	15.76	11.6	13.05	27.13	11.28
Merged-chr5-139325622-3	chr5	139325519	139325719	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-155.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	24.23	22.13	17.11	26.14	22.91	26.34	9.97	19.12	25.77	30.13	37.18	15.98
Merged-chr11-105369052-3	chr11	105368941	105369141	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172568, intron 10 of 11)	intron (NM_172568, intron 10 of 11)	76395.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	28.27	22.89	25.1	14.08	14.32	34.49	18.6	17.64	20.85	20.59	45.73	19.11
Merged-chr2-160208488-3	chr2	160208383	160208583	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119011.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	18.17	12.07	24.53	14.48	29.46	17.87	28.9	29.13	27.93	40.67	23.62	36.03
Merged-chr16-92039684-3	chr16	92039574	92039774	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18648.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	25.04	27.17	18.83	12.47	59.73	58.01	30.56	34.15	51.93	44.69	65.83	26.63
Merged-chr18-76228154-3	chr18	76228053	76228253	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13548.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	18.57	10.82	24.53	16.09	17.18	13.8	15.94	28.57	31.67	32.64	36.68	27.88
Merged-chr7-128068045-3	chr7	128067940	128068140	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 2 of 29)	intron (NM_008401, intron 2 of 29)	5400.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	22.21	13.58	19.4	22.52	16.36	18.19	12.29	20.44	19.47	24.1	30.15	18.48
Merged-chr15-59646923-3	chr15	59646826	59647026	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1728.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	24.23	19.87	35.94	33.38	33.55	34.49	23.92	35.55	28.91	17.57	30.15	36.03
Merged-chr9-44986623-3	chr9	44986497	44986697	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013487, exon 5 of 5)	3' UTR (NM_013487, exon 5 of 5)	4811.0	NM_013487	12500.0	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	21.8	14.09	16.54	26.14	24.14	38.26	27.57	30.87	22.03	16.07	34.67	21.62
Merged-chr15-66103580-3	chr15	66103452	66103652	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-126748.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	16.15	12.83	22.82	14.88	25.77	17.87	12.62	26.83	25.57	21.59	22.11	17.23
Merged-chr10-98781143-3	chr10	98781060	98781260	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133482.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	18.17	16.35	17.68	15.28	41.73	50.17	27.57	26.33	37.37	32.13	31.15	12.84
Merged-chr16-77251630-3	chr16	77251543	77251743	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77685.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	20.19	18.86	7.99	16.09	19.64	30.42	15.28	28.93	28.52	22.59	20.1	11.28
Merged-chr15-59615678-3	chr15	59615586	59615786	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32968.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	20.59	24.15	37.08	30.97	14.32	25.4	19.27	25.26	23.6	16.57	28.64	15.98
Merged-chr8-110846638-3	chr8	110846529	110846729	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	29.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	15.75	19.62	12.55	18.9	13.91	21.95	21.26	18.31	15.93	30.13	15.58	15.35
Merged-chr8-83055051-3	chr8	83054940	83055140	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-110312.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	24.63	10.31	22.25	34.19	41.73	19.44	74.41	69.56	35.99	38.66	34.17	28.19
Merged-chr2-49276223-3	chr2	49276110	49276310	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290656, intron 6 of 9)	intron (NM_001290656, intron 6 of 9)	30310.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	17.36	14.09	31.38	32.98	23.73	17.87	25.58	37.07	22.62	17.07	31.66	21.62
Merged-chr4-48419224-3	chr4	48419140	48419340	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281978, intron 15 of 18)	intron (NM_001281978, intron 15 of 18)	54223.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	10.5	23.14	23.39	14.48	40.5	32.61	38.2	60.22	34.42	25.61	55.78	32.27
Merged-chr16-17704446-3	chr16	17704320	17704520	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	18480.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	22.21	10.82	28.52	15.28	20.05	14.74	30.23	35.58	25.37	25.61	23.62	20.36
Merged-chr11-5485431-3	chr11	5485334	5485534	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35207.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	31.09	24.15	21.68	23.73	18.82	28.22	11.63	15.22	42.09	37.16	62.31	24.75
Merged-chr2-101767393-3	chr2	101767265	101767465	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30342.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	13.33	18.36	11.41	16.89	19.64	17.87	16.94	10.68	12.98	17.07	17.59	14.41
Merged-chr10-127339069-3	chr10	127339033	127339233	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	2446.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	9.69	16.35	10.27	17.29	11.86	12.86	12.29	10.4	18.29	22.09	17.59	11.28
Merged-chr19-34517416-3	chr19	34517301	34517501	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10073.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	28.27	14.34	36.51	40.62	29.46	35.75	38.53	47.07	41.5	40.17	56.28	32.27
Merged-chr10-57828847-3	chr10	57828734	57828934	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	34290.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	25.04	9.31	51.34	34.19	36.0	32.61	98.99	81.28	18.1	31.63	60.8	24.12
Merged-chr7-110006663-3	chr7	110006569	110006769	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037959)	promoter-TSS (NR_037959)	-23.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	33.52	20.63	30.23	33.78	26.18	20.07	26.91	42.9	35.6	16.57	29.14	24.43
Merged-chr6-115321545-3	chr6	115321431	115321631	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-39420.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	16.15	21.63	43.35	36.6	30.68	13.48	15.61	41.92	21.64	15.57	30.65	20.36
Merged-chr10-81173287-3	chr10	81173179	81173379	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3352.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	33.92	14.84	29.09	30.57	36.41	29.16	9.97	33.95	34.81	39.67	34.67	27.88
Merged-chr10-26373114-3	chr10	26372996	26373196	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172787, intron 1 of 21)	intron (NM_172787, intron 1 of 21)	976.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	16.96	21.13	19.4	19.31	18.0	13.8	14.62	25.74	31.27	16.57	38.19	16.92
Merged-chr12-98820810-3	chr12	98820709	98820909	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 28 of 43)	intron (NM_001081191, intron 28 of 43)	49787.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	17.77	16.1	16.54	16.49	20.46	20.7	18.93	27.53	32.06	17.57	42.21	19.74
Merged-chr16-38395620-3	chr16	38395515	38395715	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_134102)	TTS (NM_134102)	33425.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	23.02	11.82	26.81	20.11	46.23	29.16	23.92	31.99	27.14	35.65	34.17	18.8
Merged-chr5-115187992-3	chr5	115187913	115188113	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1892.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	31.09	23.9	26.24	24.94	27.82	32.61	19.6	19.91	34.03	15.57	24.12	17.23
Merged-chr2-148490775-3	chr2	148490682	148490882	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47247.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	16.56	8.55	6.85	20.11	17.18	22.58	16.28	26.69	29.31	24.6	33.16	16.6
Merged-chr19-60946824-3	chr19	60946724	60946924	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	57075.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	22.61	11.82	26.24	26.95	19.23	11.29	27.9	27.62	28.72	29.62	23.11	30.07
Merged-chr2-30393100-3	chr2	30392990	30393190	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020329, intron 1 of 7)	intron (NM_020329, intron 1 of 7)	836.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	15.75	10.31	32.52	6.44	16.77	16.31	10.63	12.56	25.77	28.62	25.12	9.71
Merged-chr11-97632157-3	chr11	97632051	97632251	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2435.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	34.73	24.65	14.83	20.11	38.05	34.49	14.62	17.55	29.5	25.11	32.66	10.96
Merged-chr15-94688679-2	chr15	94688578	94688778	+	998.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59493.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	6.29	2.85	6.44	13.5	6.27	12.95	16.01	18.49	17.07	37.18	15.66
Merged-chr11-57677519-2	chr11	57677416	57677616	+	998.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-28022.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	14.13	12.32	17.11	23.33	24.96	18.81	16.61	20.05	7.28	0.0	3.01	1.88
Merged-chr11-73324192-3	chr11	73324124	73324324	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	413.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	14.94	21.38	16.54	19.31	18.82	26.03	21.59	21.45	23.41	14.06	19.6	18.8
Merged-chr2-5951885-3	chr2	5951759	5951959	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081132, intron 1 of 21)	CpG	390.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	22.21	15.85	11.41	14.08	27.0	17.87	13.62	16.04	16.92	20.08	23.11	11.28
Merged-chr15-76626977-3	chr15	76626862	76627062	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-878.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	18.98	27.17	21.68	11.26	20.86	39.51	20.59	24.36	28.91	40.17	32.16	19.11
Merged-chr18-36359298-3	chr18	36359183	36359383	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	10659.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	18.17	13.08	14.83	23.73	9.41	16.93	12.95	26.16	17.9	16.57	22.61	13.16
Merged-chr19-11813320-3	chr19	11813254	11813454	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	6049.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	18.17	21.63	5.7	4.02	16.36	31.36	6.64	7.07	21.64	21.09	1.0	4.39
Merged-chr2-45239084-3	chr2	45238954	45239154	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121612.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	18.57	28.17	14.83	14.48	18.0	22.89	22.26	11.86	18.88	22.09	20.1	9.08
Merged-chr5-146818949-3	chr5	146818858	146819058	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-13932.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	16.96	4.78	17.68	26.55	13.91	10.98	26.24	19.46	14.36	15.06	21.1	10.96
Merged-chr15-93387636-3	chr15	93387533	93387733	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347097, exon 7 of 8)	exon (NM_001347097, exon 7 of 8)	10701.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	30.69	23.14	22.82	25.74	27.82	17.87	15.94	26.66	23.41	24.6	29.14	12.84
Merged-chr14-49172597-3	chr14	49172488	49172688	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027492, intron 1 of 4)	CpG	342.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	20.19	24.9	21.68	28.96	29.46	24.46	34.88	19.35	23.01	24.6	30.65	12.84
Merged-chrX-75084874-3	chrX	75084695	75084895	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181584, exon 1 of 10)	5' UTR (NM_181584, exon 1 of 10)	110.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	12.52	13.83	16.54	32.58	25.77	11.29	20.93	15.22	12.59	21.59	15.07	12.22
Merged-chr1-88094591-3	chr1	88094396	88094596	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	-505.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	1.21	1.01	2.28	0.8	22.09	37.94	25.91	4.15	35.99	36.15	49.24	15.35
Merged-chr15-6340574-3	chr15	6340465	6340665	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40776.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	22.21	7.29	27.38	12.07	20.46	12.23	24.25	31.6	20.85	10.54	20.1	12.22
Merged-chr1-65473335-2	chr1	65473247	65473447	+	998.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	162090.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	6.06	4.53	5.7	13.27	13.91	14.11	12.95	26.33	12.98	6.03	19.09	3.45
Merged-chr12-106658445-2	chr12	106658352	106658552	+	998.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57872.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	7.27	3.02	2.28	10.46	48.68	60.52	62.45	82.15	17.11	15.57	39.19	14.1
Merged-chr7-67442530-3	chr7	67442438	67442638	+	998.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-69680.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	29.88	20.88	8.56	19.31	41.73	26.97	7.97	22.57	36.78	36.65	31.66	15.66
Merged-chr10-17721198-3	chr10	17721122	17721322	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2006.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	17.36	18.61	16.54	15.28	14.73	8.47	13.62	16.65	21.83	13.05	19.6	14.41
Merged-chr2-3512188-3	chr2	3512084	3512284	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	630.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	44.01	44.27	16.54	20.11	24.96	62.09	16.28	9.95	45.24	41.67	43.72	15.04
Merged-chr17-32536525-3	chr17	32536404	32536604	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024442)	promoter-TSS (NM_024442)	-53.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	15.34	15.09	22.82	16.89	24.55	20.38	6.98	14.72	26.36	34.14	30.65	24.12
Merged-chr7-142460704-3	chr7	142460628	142460828	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271509)	promoter-TSS (NM_001271509)	-84.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	19.79	16.35	10.84	29.36	15.96	18.5	15.61	9.48	28.72	25.11	16.58	17.86
Merged-chr7-19001269-3	chr7	19001173	19001373	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145579, exon 3 of 3)	3' UTR (NM_145579, exon 3 of 3)	-2792.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	26.25	20.63	14.83	17.29	26.59	33.87	18.6	26.41	31.47	34.14	25.63	13.47
Merged-chr16-91717162-3	chr16	91717074	91717274	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 2 of 11)	MTE2a|LTR|ERVL-MaLR	11628.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	16.96	18.61	18.25	14.48	27.82	23.83	9.63	34.12	28.32	29.12	37.69	25.69
Merged-chr16-17554138-3	chr16	17554033	17554233	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	7114.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	25.04	20.12	24.53	21.72	23.73	45.15	20.93	30.76	28.13	16.57	19.09	11.28
Merged-chr10-99204748-3	chr10	99204650	99204850	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58481.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	18.57	12.32	28.52	15.69	25.77	16.31	9.3	10.99	14.36	18.08	21.61	14.1
Merged-chr12-51678498-3	chr12	51678396	51678596	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-12470.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	15.34	22.89	22.82	21.32	18.0	16.62	11.96	24.14	21.64	16.57	24.12	20.68
Merged-chr8-123190967-3	chr8	123190866	123191066	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	4731.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	15.34	11.07	11.41	22.93	15.55	13.48	12.95	8.92	25.18	16.57	19.6	12.22
Merged-chr18-53149767-3	chr18	53149681	53149881	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26511.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	26.25	21.38	16.54	18.5	16.36	18.19	13.95	18.5	26.55	26.11	43.72	14.72
Merged-chr3-108256155-3	chr3	108256069	108256269	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	-757.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	29.48	25.66	32.52	36.6	41.73	28.22	22.59	17.24	43.47	39.16	37.18	30.7
Merged-chr10-96214078-3	chr10	96213967	96214167	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12140.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	23.02	17.1	15.97	23.73	31.09	26.03	21.59	25.63	27.73	19.08	26.63	18.48
Merged-chr9-106429874-1	chr9	106429774	106429974	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001324534, exon 1 of 3)	5' UTR (NM_001324534, exon 1 of 3)	463.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	7.27	6.54	3.42	3.62	8.59	8.78	6.64	7.57	15.14	7.53	9.04	9.08
Merged-chr5-118413575-2	chr5	118413469	118413669	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-147150.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	11.71	5.53	6.85	5.63	19.64	30.1	13.95	20.92	21.44	16.57	21.1	6.58
Merged-chr17-84114142-3	chr17	84114032	84114232	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35472.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	21.4	16.35	14.83	12.47	16.77	24.77	10.3	25.15	26.95	36.15	43.21	24.12
Merged-chr9-95681532-2	chr9	95681444	95681644	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029620, exon 5 of 9)	exon (NM_029620, exon 5 of 9)	43916.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.85	3.52	2.28	1.61	12.68	13.17	9.3	11.1	24.78	21.09	50.25	16.29
Merged-chr16-30943495-3	chr16	30943394	30943594	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	137938.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	22.61	12.83	13.12	16.09	14.32	15.99	13.95	18.56	18.29	29.62	19.09	13.16
Merged-chr1-61042903-1	chr1	61042803	61043003	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K-int|LTR|ERVL-MaLR	64989.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.4	0.0	0.0	0.0	3.68	5.02	7.31	8.52	0.0	0.0	0.0	0.31
Merged-chr14-45107249-3	chr14	45107157	45107357	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112168.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	16.15	21.13	30.23	47.06	16.77	29.79	49.49	47.8	23.01	14.06	34.67	29.45
Merged-chr13-102665365-3	chr13	102665259	102665459	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-28188.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	30.69	26.66	26.24	32.18	15.55	23.52	10.3	18.53	25.77	26.11	28.64	15.04
Merged-chr3-69171300-3	chr3	69171177	69171377	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40044.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	15.75	13.58	9.7	26.14	9.41	15.05	16.28	16.04	13.77	18.08	16.08	11.59
Merged-chr7-80371425-3	chr7	80371330	80371530	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172903)	promoter-TSS (NM_172903)	-55.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	23.82	20.12	19.4	14.48	29.05	31.04	9.3	16.46	16.13	22.09	22.61	10.65
Merged-chr11-104441750-3	chr11	104441628	104441828	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081045, exon 1 of 14)	5' UTR (NM_001081045, exon 1 of 14)	563.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	20.19	17.86	13.69	24.13	27.82	28.85	19.93	20.3	32.26	34.14	37.69	23.18
Merged-chr10-112138801-3	chr10	112138697	112138897	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR46A2|LTR|ERVK	-24824.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	18.57	28.17	14.83	24.94	21.68	31.98	27.24	22.15	24.59	31.63	22.11	10.96
Merged-chr4-117886949-3	chr4	117886849	117887049	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033617, intron 1 of 7)	CpG	380.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	23.82	11.32	13.12	15.28	11.86	14.11	16.61	22.99	33.04	31.13	36.18	20.68
Merged-chr6-83613454-3	chr6	83613362	83613562	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40958.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	13.33	13.33	20.54	26.95	29.05	35.75	20.59	27.73	20.85	26.11	33.67	14.1
Merged-chr9-83555159-2	chr9	83555061	83555261	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	6823.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	11.71	5.03	3.99	3.62	4.5	9.41	3.99	8.55	37.57	20.59	40.7	16.29
Merged-chr16-10452715-3	chr16	10452606	10452806	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5344.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	25.04	30.69	55.9	30.16	34.77	20.7	24.91	45.28	45.04	21.59	21.61	21.3
Merged-chr3-149085014-2	chr3	149084878	149085078	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130343.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	18.17	11.32	12.55	34.59	18.41	15.99	32.88	39.0	5.11	5.02	12.06	4.39
Merged-chr2-121450262-3	chr2	121450180	121450380	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001025371)	TTS (NM_001025371)	1082.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	12.11	14.84	15.4	22.52	16.77	24.46	16.28	19.71	22.62	30.13	22.61	24.12
Merged-chr4-130916866-3	chr4	130916782	130916982	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	3548.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	19.38	17.86	36.51	23.73	22.5	15.05	11.96	26.75	18.49	19.58	22.11	20.36
Merged-chr17-36252569-3	chr17	36252460	36252660	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5286.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	18.98	24.15	11.41	22.52	11.45	18.81	18.6	20.33	17.51	19.58	19.09	7.83
Merged-chr17-62623375-3	chr17	62623289	62623489	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	257928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	14.13	14.59	30.23	29.36	48.68	44.84	30.56	53.92	33.24	52.72	69.34	26.63
Merged-chr1-138962615-5	chr1	138962510	138962710	+	997.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1099.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	6.06	11.07	9.13	14.48	9.41	13.8	12.95	12.5	17.9	17.57	6.53	5.33
Merged-chr9-66512545-3	chr9	66512479	66512679	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	2014.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	35.53	32.45	16.54	28.56	44.59	40.76	14.62	41.83	34.62	39.16	36.18	34.77
Merged-chr2-167800238-3	chr2	167800143	167800343	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	109066.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	11.31	14.09	23.96	22.52	20.46	29.79	16.94	14.05	49.76	26.61	55.27	28.19
Merged-chr4-116627506-3	chr4	116627405	116627605	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284229)	promoter-TSS (NM_001284229)	-8.0	NM_001284229	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	24.23	16.1	9.7	20.91	16.77	18.81	11.63	14.19	29.9	20.08	23.62	12.84
Merged-chr2-122418514-3	chr2	122418433	122418633	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22287.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	34.32	18.36	16.54	15.69	45.82	63.97	48.83	37.26	16.92	21.59	24.62	14.1
Merged-chr18-73746694-3	chr18	73746587	73746787	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	7792.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	22.61	13.08	26.24	33.38	21.68	13.17	21.92	35.92	20.06	27.62	26.63	20.36
Merged-chr15-103549658-3	chr15	103549546	103549746	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11654.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	16.56	21.63	14.26	28.96	23.73	22.89	26.24	26.1	30.29	24.6	39.7	21.93
Merged-chr13-115209585-3	chr13	115209466	115209666	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107602.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	14.94	18.36	21.11	30.97	16.36	19.13	10.63	12.42	22.23	27.62	20.6	13.16
Merged-chr5-117871721-3	chr5	117871620	117871820	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	4881.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	13.73	15.85	18.25	18.5	22.91	22.89	24.58	20.47	33.63	45.69	43.72	21.93
Merged-chr7-48750024-3	chr7	48749873	48750073	+	997.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39030.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	8.88	12.83	18.25	16.09	10.23	17.87	24.25	16.04	16.33	18.58	17.08	16.6
Merged-chr12-8993402-3	chr12	8993261	8993461	+	997.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159527, intron 10 of 26)	B4A|SINE|B4	19360.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	14.94	15.09	11.41	14.48	23.32	13.8	21.59	19.63	28.72	17.07	31.15	17.86
Merged-chr12-73794265-2	chr12	73794186	73794386	+	997.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107038.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.65	11.07	7.42	4.42	14.73	23.83	9.97	17.41	31.47	23.1	25.63	8.46
Merged-chr5-66087202-3	chr5	66087085	66087285	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	10994.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	25.44	24.4	37.65	23.33	34.77	27.59	10.96	32.38	46.03	37.16	35.17	18.48
Merged-chr15-97927991-3	chr15	97927902	97928102	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19706.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	22.61	26.16	21.68	19.71	22.09	30.1	13.62	22.46	40.91	25.11	44.72	21.3
Merged-chr13-98874401-3	chr13	98874300	98874500	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	16642.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	48.05	34.71	29.09	27.75	46.64	34.81	25.91	39.25	33.63	36.15	43.21	14.1
Merged-chr1-87639943-3	chr1	87639830	87640030	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	19618.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	21.0	7.55	31.95	21.72	18.0	20.07	13.62	27.25	30.09	17.57	33.16	27.25
Merged-chr2-173771918-3	chr2	173771815	173772015	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34344.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	18.98	10.31	25.1	14.88	28.64	18.81	33.55	43.26	21.24	24.6	37.18	19.11
Merged-chr15-12118575-3	chr15	12118458	12118658	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358823, intron 2 of 18)	CpG-4794	707.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	11.71	18.36	16.54	23.33	24.96	17.56	23.92	17.27	21.24	25.11	28.14	27.25
Merged-chr15-59481312-3	chr15	59481224	59481424	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107126.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	12.11	15.85	18.25	8.04	32.32	67.42	32.22	23.83	19.87	36.15	24.12	6.58
Merged-chr6-125192160-3	chr6	125192076	125192276	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-24.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	17.77	23.9	15.4	19.71	16.77	20.38	9.97	18.17	29.11	15.57	20.1	19.42
Merged-chr12-100740437-3	chr12	100740317	100740517	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15297.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	21.4	16.35	18.83	20.51	19.64	16.31	23.25	33.2	18.88	16.57	12.56	16.6
Merged-chr15-81857888-2	chr15	81857778	81857978	+	997.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020507, intron 1 of 1)	CpG	448.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	16.15	9.81	10.27	17.7	21.27	19.76	10.3	8.27	31.86	29.62	25.12	16.92
Merged-chr6-119471011-3	chr6	119470889	119471089	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	-3778.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	19.38	12.83	22.25	16.49	21.27	15.99	21.92	25.91	31.47	24.6	32.16	18.48
Merged-chr10-25360683-3	chr10	25360538	25360738	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	840.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	12.52	22.89	7.99	13.67	10.23	19.44	8.64	12.45	26.16	18.08	22.61	17.23
Merged-chr4-141873083-3	chr4	141873002	141873202	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1818.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	20.59	21.88	12.55	12.87	23.73	34.18	18.6	9.62	40.32	54.23	38.69	17.23
Merged-chr2-92459321-3	chr2	92459211	92459411	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_211358, exon 1 of 2)	5' UTR (NM_211358, exon 1 of 2)	483.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	14.13	13.08	15.4	20.51	29.05	23.2	22.59	23.97	30.29	30.13	33.16	15.98
Merged-chr14-57745567-3	chr14	57745492	57745692	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 1 of 7)	CpG	531.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	19.38	13.58	18.25	16.09	13.09	22.58	12.29	22.91	25.77	20.08	33.16	17.86
Merged-chr10-128149804-3	chr10	128149706	128149906	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039080, intron 3 of 13)	intron (NM_001039080, intron 3 of 13)	26762.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	35.13	23.64	19.4	46.66	36.0	37.32	41.52	37.99	24.19	21.59	51.25	12.84
Merged-chr13-75992876-1	chr13	75992776	75992976	+	997.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029343, intron 3 of 4)	intron (NM_029343, intron 3 of 4)	25137.0	NM_029343	75571.0	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	3.23	1.76	9.13	5.23	1.23	1.57	0.33	4.21	24.59	13.56	23.11	21.62
Merged-chr10-118866051-3	chr10	118865937	118866137	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2866.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	23.02	21.38	14.26	6.03	27.82	38.88	10.63	6.98	35.6	37.16	23.62	15.04
Merged-chr7-135736530-3	chr7	135736432	135736632	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20153.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	25.84	21.13	16.54	18.5	29.46	24.77	12.29	21.06	43.86	32.64	33.16	32.89
Merged-chr7-97781999-3	chr7	97781903	97782103	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6538.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	9.29	10.06	14.26	5.63	13.5	11.6	11.29	15.98	22.23	18.08	19.09	14.1
Merged-chr10-121429400-3	chr10	121429314	121429514	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	46836.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	36.75	17.36	29.66	38.21	53.18	25.71	37.2	44.22	23.8	12.05	19.6	21.62
Merged-chr4-119293990-3	chr4	119293899	119294099	+	997.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011732, intron 1 of 7)	CpG-10232	514.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	13.73	9.31	7.42	12.07	22.09	11.6	10.96	10.63	19.47	19.08	16.58	14.1
Merged-chr5-74957446-3	chr5	74957349	74957549	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8255.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	23.42	9.31	30.8	28.96	47.87	49.86	38.2	69.42	42.29	27.11	79.89	32.58
Merged-chr6-112752164-3	chr6	112752065	112752265	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-55495.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	32.3	25.15	25.1	23.73	30.27	32.3	15.61	30.25	24.59	22.09	17.08	18.48
Merged-chr7-38183170-3	chr7	38183064	38183264	+	997.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028166)	promoter-TSS (NM_028166)	-53.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	6.46	16.1	16.54	12.47	14.32	15.37	12.29	15.25	12.78	19.58	26.13	22.24
Merged-chr17-23749005-5	chr17	23748965	23749165	+	997.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-171.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	21.0	31.44	30.23	26.55	36.82	31.04	19.93	23.83	24.0	28.62	17.08	22.24
Merged-chr16-30063307-3	chr16	30063210	30063410	+	997.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2047.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	14.54	14.84	14.26	10.46	20.46	21.32	19.27	18.45	30.09	25.61	13.06	19.11
Merged-chr2-172406393-4	chr2	172406361	172406561	+	997.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	12667.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	7.67	15.34	9.7	20.11	9.41	6.27	6.98	8.3	12.0	10.04	16.58	8.14
Merged-chr12-73881659-3	chr12	73881570	73881770	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19654.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	23.02	34.21	47.92	31.77	30.68	44.21	8.3	38.07	35.21	36.15	46.73	26.0
Merged-chr4-6517809-3	chr4	6517701	6517901	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63530.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	14.94	29.43	34.8	33.78	22.09	14.11	20.26	26.22	30.49	18.58	47.23	26.94
Merged-chr10-86949296-3	chr10	86949210	86949410	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	58632.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	24.63	20.37	27.95	17.7	34.77	47.66	20.93	27.53	40.71	37.66	26.13	15.98
Merged-chr12-69357128-3	chr12	69357022	69357222	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	54.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	16.56	14.59	18.83	13.27	21.68	16.31	18.27	21.28	30.49	27.11	24.62	18.48
Merged-chr1-184616140-3	chr1	184616031	184616231	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58440.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	25.84	10.31	26.24	22.52	19.64	38.57	14.95	32.24	14.36	14.06	28.14	15.35
Merged-chr13-56634520-3	chr13	56634427	56634627	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24941.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	18.98	13.58	17.11	11.66	16.77	24.46	14.62	21.11	15.74	24.1	18.59	15.98
Merged-chr9-118610782-3	chr9	118610702	118610902	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4093.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	10.09	8.3	20.54	11.66	13.91	25.09	13.62	18.11	25.37	21.59	38.69	14.72
Merged-chr4-130783103-3	chr4	130783004	130783204	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9433.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	14.13	11.07	27.95	4.02	26.59	43.27	28.23	20.19	25.57	24.6	26.13	11.28
Merged-chr5-105356591-3	chr5	105356481	105356681	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10105.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	27.46	37.23	51.91	22.52	22.5	34.81	25.91	13.85	34.22	30.13	22.11	22.87
Merged-chr13-8985070-3	chr13	8984978	8985178	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027000, intron 10 of 16)	intron (NM_027000, intron 10 of 16)	10934.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	14.94	21.13	33.09	28.56	21.68	21.01	13.95	25.74	47.8	26.61	42.21	30.07
Merged-chr3-95311205-3	chr3	95311117	95311317	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3973.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	15.34	15.34	18.25	12.87	18.82	20.7	12.29	8.13	18.49	19.08	22.11	15.66
Merged-chr5-147742728-3	chr5	147742644	147742844	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16756.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	16.15	16.85	33.09	32.18	30.68	22.58	18.27	23.97	23.21	46.19	38.69	23.49
Merged-chr17-27612201-3	chr17	27612092	27612292	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10772.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	6.86	10.06	34.23	19.71	15.14	16.31	12.95	18.76	35.6	22.59	32.16	25.06
Merged-chr1-172515550-3	chr1	172515443	172515643	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5587.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	24.23	16.1	15.4	20.91	16.36	10.98	10.3	15.7	18.29	19.08	28.14	12.22
Merged-chr13-107118312-3	chr13	107118222	107118422	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95752.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	16.96	18.36	18.25	20.51	18.41	16.31	12.95	22.43	22.42	8.54	31.66	10.02
Merged-chr3-116129309-4	chr3	116129132	116129332	+	997.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011693, intron 1 of 8)	intron (NM_011693, intron 1 of 8)	456.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	23.42	30.69	14.83	8.04	12.68	22.58	13.29	8.3	33.24	27.11	13.06	12.84
Merged-chr10-93263658-2	chr10	93263554	93263754	+	997.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	47505.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	13.33	14.34	24.53	20.11	14.73	22.26	17.61	30.56	4.52	7.03	5.53	2.51
Merged-chr4-128724390-3	chr4	128724286	128724486	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3185.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	24.23	20.12	46.21	30.97	28.23	18.5	31.89	51.2	24.78	14.56	45.73	23.81
Merged-chr17-25875527-3	chr17	25875452	25875652	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	52.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	18.17	25.15	30.8	15.69	25.36	30.73	18.27	23.47	28.32	15.57	24.12	17.54
Merged-chr19-12016389-3	chr19	12016297	12016497	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20343.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	16.15	21.38	45.64	28.96	23.73	27.28	19.6	25.12	45.83	39.67	49.24	34.15
Merged-chr6-131245216-3	chr6	131245128	131245328	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001170851, exon 2 of 9)	exon (NM_001170851, exon 2 of 9)	2134.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	21.4	16.85	19.97	19.31	24.14	16.93	28.57	26.1	17.11	14.06	23.62	12.53
Merged-chr18-37849002-3	chr18	37848891	37849091	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5669.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	6.46	13.33	21.11	16.89	11.45	12.86	8.97	22.79	21.44	19.58	22.11	11.9
Merged-chr18-76378912-3	chr18	76378804	76379004	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116459.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	18.57	15.34	24.53	20.91	22.09	29.16	19.6	24.2	36.58	20.59	40.7	14.1
Merged-chr5-29289915-3	chr5	29289814	29290014	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88476.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	11.31	15.09	22.25	26.55	22.09	21.01	19.6	30.2	40.71	27.11	42.71	30.07
Merged-chr11-88187951-3	chr11	88187839	88188039	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172099, intron 6 of 9)	intron (NM_001172099, intron 6 of 9)	-6167.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	13.73	17.61	18.25	21.72	18.0	14.74	22.59	11.13	15.74	22.09	23.11	15.35
Merged-chr1-37308824-3	chr1	37308723	37308923	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8985.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	62.99	61.37	85.0	48.67	18.82	14.42	11.63	16.88	24.0	16.57	17.59	20.05
Merged-chr16-93914427-3	chr16	93914295	93914495	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15172.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	21.8	16.6	11.98	12.07	31.09	47.98	20.26	19.32	172.69	140.59	155.27	83.64
Merged-chr6-87500453-3	chr6	87500357	87500557	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-4130.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	25.44	26.41	21.68	18.5	25.77	24.77	26.57	27.17	25.96	21.59	22.61	15.98
Merged-chr13-112251637-3	chr13	112251520	112251720	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36831.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.04	6.79	18.25	16.89	18.82	12.86	19.27	20.24	14.55	14.06	19.09	15.35
Merged-chr1-33898529-3	chr1	33898439	33898639	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	9082.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	42.8	29.43	39.93	45.85	24.96	32.93	14.95	26.24	15.34	26.61	19.6	25.37
Merged-chr1-131560846-4	chr1	131560746	131560946	+	997.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	32943.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	10.9	12.32	9.13	13.67	19.64	22.58	6.98	13.32	15.54	22.09	10.55	16.29
Merged-chr11-69981284-3	chr11	69981179	69981379	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018740)	promoter-TSS (NM_018740)	-44.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	31.9	23.9	17.11	6.84	19.23	32.93	14.62	12.64	38.35	33.64	38.69	18.17
Merged-chr14-49019973-3	chr14	49019859	49020059	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207214, intron 13 of 17)	intron (NM_207214, intron 13 of 17)	-46590.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	22.61	23.64	39.93	31.37	27.82	21.95	24.58	33.06	28.13	21.59	17.59	28.19
Merged-chr1-80665367-3	chr1	80665278	80665478	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-26.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	22.61	27.17	47.35	26.95	33.96	26.34	25.24	34.57	33.24	21.09	36.18	11.28
Merged-chr4-118098899-1	chr4	118098799	118098999	+	997.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	Charlie20a|DNA|hAT-Charlie	36047.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.23	6.29	5.7	6.44	6.14	19.13	12.62	12.03	0.0	0.5	1.51	0.31
Merged-chr4-139209047-3	chr4	139208960	139209160	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14949.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	14.54	12.83	20.54	22.52	12.68	14.11	20.59	27.2	18.29	9.04	26.13	14.72
Merged-chr16-92021175-3	chr16	92021076	92021276	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-37146.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	18.57	17.36	19.4	18.5	33.96	43.59	11.96	17.64	49.57	22.59	47.74	15.66
Merged-chr8-46792011-4	chr8	46791876	46792076	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	52231.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	11.71	13.33	18.83	16.09	23.73	10.03	27.57	20.52	13.57	15.06	18.09	10.02
Merged-chr12-3355229-3	chr12	3355110	3355310	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-9922.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	14.54	21.13	33.09	19.71	33.55	51.11	21.26	26.64	52.12	44.19	50.75	28.51
Merged-chr12-51768862-3	chr12	51768747	51768947	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144788, exon 25 of 43)	exon (NM_144788, exon 25 of 43)	60689.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	16.96	12.32	19.4	21.32	24.55	21.95	17.94	36.2	26.75	18.58	24.12	9.4
Merged-chr10-127522427-3	chr10	127522310	127522510	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252316)	promoter-TSS (NM_001252316)	34.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	18.17	19.62	7.42	14.88	21.27	19.13	5.65	17.19	21.64	11.05	6.53	4.07
Merged-chr19-11698519-3	chr19	11698403	11698603	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033283, intron 1 of 5)	intron (NM_001033283, intron 1 of 5)	1448.0	NM_001033283	225923.0	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	34.32	21.88	50.77	37.4	29.46	15.37	13.29	30.7	26.95	16.07	19.09	20.36
Merged-chr8-126827106-3	chr8	126826991	126827191	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21929.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	67.03	38.99	32.52	13.67	73.64	103.48	67.1	61.54	84.18	73.31	58.79	36.34
Merged-chr11-120159013-3	chr11	120158913	120159113	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7662.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	9.69	15.09	10.84	12.87	20.46	25.09	10.63	19.63	20.26	27.11	29.65	13.16
Merged-chr17-46857684-3	chr17	46857573	46857773	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-26260.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	17.36	27.67	28.52	15.69	19.23	23.52	12.62	18.08	32.26	40.17	31.66	22.56
Merged-chr10-96430360-3	chr10	96430252	96430452	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186649.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	21.0	18.36	35.37	35.8	22.5	30.42	12.95	32.86	28.91	14.06	29.14	22.87
Merged-chr8-91176361-2	chr8	91176273	91176473	+	997.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40879.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	16.96	23.64	19.4	34.19	3.68	1.25	0.0	0.59	28.52	15.06	28.64	14.72
Merged-chr5-90789863-3	chr5	90789753	90789953	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3752.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	16.15	17.61	18.25	25.74	22.09	37.63	20.59	32.02	17.7	20.08	31.66	24.75
Merged-chr6-98062048-3	chr6	98061931	98062131	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70248.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	30.69	33.96	25.1	21.72	15.96	29.16	29.23	18.84	30.88	14.06	19.6	14.41
Merged-chr17-57344158-3	chr17	57344053	57344253	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14533.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	22.61	29.18	22.82	17.7	15.14	24.15	18.6	17.38	34.42	28.12	30.65	10.96
Merged-chr18-24206320-3	chr18	24206204	24206404	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361200, exon 1 of 13)	5' UTR (NM_001361200, exon 1 of 13)	310.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	36.75	27.42	24.53	42.23	25.77	16.62	24.58	29.47	32.06	28.62	33.67	12.22
Merged-chr2-180692804-3	chr2	180692704	180692904	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_111965)	promoter-TSS (NR_111965)	-756.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	22.21	18.11	28.52	41.02	33.14	13.48	30.23	34.77	16.72	15.57	38.19	12.22
Merged-chr9-95507592-3	chr9	95507504	95507704	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	4392.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	18.57	14.34	21.68	15.69	6.95	21.32	11.63	18.76	25.77	7.53	19.09	24.43
Merged-chr4-75400953-3	chr4	75400856	75401056	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44A|LTR|ERVK	-122664.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	19.79	17.1	17.11	18.9	33.14	31.04	25.91	22.82	48.39	26.11	32.16	14.1
Merged-chr15-73716574-3	chr15	73716508	73716708	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6537.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	21.4	20.63	10.27	18.9	17.59	21.64	20.26	16.4	21.44	33.64	25.63	15.66
Merged-chr17-24172429-3	chr17	24172337	24172537	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2759.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	19.38	28.67	14.83	16.89	28.23	34.81	15.28	15.25	86.94	80.34	83.41	52.94
Merged-chr17-56023537-3	chr17	56023412	56023612	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13125.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	27.05	19.12	13.12	17.29	27.0	31.98	19.6	23.52	23.6	23.6	36.18	13.16
Merged-chr11-5787797-3	chr11	5787698	5787898	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-685.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	22.21	11.82	32.52	12.87	29.46	33.24	27.9	23.22	36.98	29.62	30.65	25.06
Merged-chr1-97769309-5	chr1	97769266	97769466	+	997.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026250)	promoter-TSS (NM_026250)	726.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	4.85	6.54	1.71	10.05	11.05	7.53	15.28	12.03	10.42	17.07	9.55	11.9
Merged-chr19-53404822-3	chr19	53404757	53404957	+	997.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14223.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	60.57	62.88	45.64	20.11	51.14	116.34	57.13	26.5	47.21	50.21	33.67	11.28
Merged-chr2-118507294-3	chr2	118507152	118507352	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-27556.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	10.9	13.08	10.84	14.88	25.77	21.64	13.29	18.53	27.34	32.64	21.61	19.74
Merged-chr15-66812699-3	chr15	66812603	66812803	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009192, exon 2 of 9)	5' UTR (NM_009192, exon 2 of 9)	19126.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	19.79	24.9	32.52	23.33	29.05	25.09	24.25	24.08	15.74	27.11	18.09	13.78
Merged-chr7-114317564-3	chr7	114317466	114317666	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-41450.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	14.54	11.82	31.95	21.72	17.59	20.38	21.59	28.49	32.85	28.12	21.1	13.47
Merged-chr13-47234766-1	chr13	47234666	47234866	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	40763.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.62	5.53	4.56	3.22	17.18	9.41	2.66	12.42	4.72	4.52	2.51	5.33
Merged-chrX-162510585-1	chrX	162510485	162510685	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178256, intron 11 of 17)	intron (NM_178256, intron 11 of 17)	54931.0	NM_001359104	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	1.62	1.51	2.28	0.4	12.68	12.54	11.63	14.83	8.46	5.02	7.54	4.07
Merged-chr19-17264972-3	chr19	17264871	17265071	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	22.21	22.89	26.24	17.29	15.96	21.32	10.96	15.64	34.03	27.11	21.1	11.9
Merged-chrX-167133211-4	chrX	167133114	167133314	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62844.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	14.13	24.15	10.27	17.29	15.96	42.02	26.57	18.0	26.95	32.13	33.16	32.27
Merged-chr1-177491193-3	chr1	177491086	177491286	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45365.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	21.0	31.94	35.94	21.72	21.27	19.76	21.26	21.56	22.23	13.56	17.59	16.6
Merged-chr1-107389946-3	chr1	107389831	107390031	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	27617.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	12.52	21.88	34.23	28.56	30.68	25.09	44.18	58.63	32.26	30.13	34.17	20.05
Merged-chr12-116442787-2	chr12	116442686	116442886	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 23 of 28)	intron (NM_133762, intron 23 of 28)	37384.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.23	2.77	10.84	4.83	11.05	2.2	20.26	29.58	34.22	28.62	43.72	17.54
Merged-chr7-73569209-3	chr7	73569095	73569295	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10800.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	17.77	23.39	44.5	18.1	27.41	42.02	13.62	20.27	29.9	33.14	38.19	14.1
Merged-chr1-154061527-3	chr1	154061387	154061587	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-139700.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	25.84	15.59	12.55	28.96	29.46	33.87	12.62	10.82	21.64	28.62	16.08	15.98
Merged-chr1-84245498-3	chr1	84245404	84245604	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	L1_Mus1|LINE|L1	-26543.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	25.44	24.65	41.64	44.24	22.91	23.2	11.29	12.06	27.14	20.59	49.75	21.93
Merged-chr1-106713913-2	chr1	106713861	106714061	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_177410, exon 1 of 1)	5' UTR (NM_177410, exon 1 of 1)	329.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	22.21	12.07	6.85	22.52	10.23	12.54	24.58	18.48	14.16	13.05	23.11	14.1
Merged-chr14-34747188-3	chr14	34747097	34747297	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001301330, exon 19 of 19)	3' UTR (NM_001301330, exon 19 of 19)	-72939.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	24.63	12.83	25.67	16.49	27.82	31.98	29.56	48.98	31.86	32.13	47.74	20.99
Merged-chr10-121264067-1	chr10	121263967	121264167	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	47329.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.25	5.28	7.99	1.61	15.55	12.23	15.28	11.24	3.34	6.03	6.03	2.82
Merged-chr6-30896775-4	chr6	30896540	30896740	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_054073)	TTS (NM_054073)	154.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	22.61	27.92	15.97	22.52	22.5	21.32	24.91	21.36	26.55	28.62	41.2	24.75
Merged-chr10-25128591-3	chr10	25128486	25128686	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	71584.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	24.63	15.34	14.83	14.48	31.09	27.91	31.89	32.86	21.83	30.63	35.68	19.74
Merged-chr14-40956696-3	chr14	40956598	40956798	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8489.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	19.79	17.1	10.27	21.72	33.55	15.05	33.22	42.65	14.95	19.58	20.1	11.59
Merged-chr16-78376066-5	chr16	78375941	78376141	+	997.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297747, intron 1 of 4)	CpG	716.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	18.98	21.63	8.56	15.28	21.68	28.85	20.93	21.14	27.73	19.58	33.67	17.54
Merged-chr12-79812997-3	chr12	79812873	79813073	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	111760.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	12.92	17.1	16.54	18.1	20.46	18.19	18.27	22.65	18.49	26.61	31.66	20.36
Merged-chr9-100454356-3	chr9	100454268	100454468	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32105.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	47.24	24.9	25.1	20.51	30.68	42.96	17.94	19.29	50.75	30.13	32.16	13.78
Merged-chr4-53386426-3	chr4	53386315	53386515	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR89|LTR|ERVL?	-53998.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	18.17	13.83	12.55	20.91	23.73	15.68	14.95	27.64	17.51	28.62	24.62	17.54
Merged-chr10-13304041-3	chr10	13303962	13304162	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20227.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	16.15	20.88	11.98	16.09	37.64	48.6	27.57	38.97	49.76	42.68	43.72	18.17
Merged-chr17-56266073-3	chr17	56265975	56266175	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	9282.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	11.31	20.12	13.12	17.29	16.36	32.93	18.27	25.88	48.39	40.67	27.64	27.88
Merged-chr13-13394236-3	chr13	13394140	13394340	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	-616.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	21.4	10.56	15.4	18.1	24.55	20.07	38.86	28.71	32.06	18.58	36.68	16.29
Merged-chr11-16968025-3	chr11	16967906	16968106	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16596.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	18.98	23.39	19.97	20.11	25.77	25.09	13.29	20.78	21.44	23.1	24.62	13.16
Merged-chr2-93334519-3	chr2	93334386	93334586	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183180)	promoter-TSS (NM_183180)	1.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	30.69	28.93	27.38	35.8	27.41	18.19	28.23	27.25	20.06	16.57	24.12	15.35
Merged-chr4-59214898-3	chr4	59214803	59215003	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011673, intron 5 of 8)	intron (NM_011673, intron 5 of 8)	25353.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	24.23	31.69	56.48	34.19	19.64	16.31	17.27	28.29	36.19	21.09	27.64	13.47
Merged-chr9-22484958-4	chr9	22484821	22485021	+	997.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178415, intron 2 of 22)	PB1D10|SINE|Alu	9206.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	9.69	17.36	7.99	18.5	13.91	16.62	24.91	25.21	12.59	13.05	12.56	12.22
Merged-chrX-51012465-3	chrX	51012363	51012563	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172413, intron 2 of 2)	intron (NM_172413, intron 2 of 2)	5555.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	17.36	22.39	17.11	20.51	28.64	20.7	25.24	28.21	27.93	25.11	27.13	24.12
Merged-chr17-65784826-3	chr17	65784727	65784927	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	MTC|LTR|ERVL-MaLR	1472.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	25.44	26.91	26.81	36.6	29.05	13.17	40.86	44.22	27.14	22.09	24.62	29.13
Merged-chr17-50410073-3	chr17	50409970	50410170	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99477.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	12.92	13.08	21.11	15.28	15.55	25.09	10.96	26.24	38.55	22.09	36.18	23.49
Merged-chr2-30077624-3	chr2	30077517	30077717	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1081.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	32.71	23.9	16.54	24.94	29.46	37.32	29.23	23.13	37.17	42.18	33.67	26.94
Merged-chr15-94545034-3	chr15	94544931	94545131	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1371.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	12.92	18.36	17.11	13.27	33.14	32.3	16.61	17.52	44.65	32.13	26.13	15.66
Merged-chr2-50786611-2	chr2	50786506	50786706	+	997.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-123078.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.81	1.01	2.85	1.61	18.82	23.2	12.62	9.22	31.67	30.13	25.63	5.01
Merged-chr12-33380220-3	chr12	33380128	33380328	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14532.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	17.77	15.85	15.97	18.9	23.73	31.98	23.92	14.3	11.01	23.1	13.57	20.05
Merged-chr9-64084536-3	chr9	64084439	64084639	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040743, intron 1 of 2)	intron (NR_040743, intron 1 of 2)	3778.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	48.05	35.97	23.96	22.12	38.46	42.96	23.92	29.92	40.32	44.69	20.1	24.12
Merged-chr13-99412886-3	chr13	99412786	99412986	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015515)	promoter-TSS (NR_015515)	-60.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	26.65	30.43	49.63	33.78	31.91	35.12	20.59	40.88	38.35	29.62	43.72	12.53
Merged-chr15-99970772-3	chr15	99970661	99970861	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284522, intron 1 of 15)	RMER6A|LTR|ERVK	696.0	NM_001284522	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	17.77	17.36	31.38	19.71	25.36	18.81	14.62	19.43	21.44	17.07	29.65	15.66
Merged-chr1-176068130-3	chr1	176068046	176068246	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357846, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	145796.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	26.65	34.96	48.49	58.72	9.82	17.56	29.23	43.43	20.06	10.04	35.17	9.4
Merged-chr12-112950532-3	chr12	112950434	112950634	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8392.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	33.52	16.85	25.1	24.53	29.05	39.2	24.25	42.59	32.06	34.14	51.76	11.9
Merged-chr15-89210700-3	chr15	89210604	89210804	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-855.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	17.36	13.33	3.42	13.67	20.05	15.05	12.29	14.27	31.08	34.14	34.17	22.87
Merged-chr1-171345618-3	chr1	171345512	171345712	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360824)	promoter-TSS (NM_001360824)	33.0	NM_001242580	27045.0	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	21.4	22.39	15.97	28.96	25.36	33.87	18.93	21.81	19.28	30.63	18.09	19.42
Merged-chr11-114883048-3	chr11	114882955	114883155	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6986.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	25.84	25.91	20.54	18.9	38.46	35.43	21.92	21.5	35.8	37.16	34.17	28.51
Merged-chr10-59224098-3	chr10	59223994	59224194	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	2172.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	12.92	14.84	21.68	17.7	17.59	15.99	17.94	17.8	27.14	16.57	36.18	13.16
Merged-chr7-75575490-3	chr7	75575398	75575598	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	119964.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	57.74	33.2	21.11	63.55	48.27	37.63	19.93	45.14	35.4	39.16	51.25	32.58
Merged-chr19-44135825-3	chr19	44135723	44135923	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356578)	promoter-TSS (NM_001356578)	53.0	NM_001081077	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	17.77	24.65	26.81	16.09	27.41	21.95	19.93	24.08	36.19	22.09	24.62	16.6
Merged-chr1-75218596-6	chr1	75218497	75218697	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	697.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	26.65	11.57	10.84	14.48	12.27	8.47	14.28	23.07	23.8	22.09	36.18	14.41
Merged-chr9-13574336-3	chr9	13574249	13574449	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45640.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	14.94	13.08	27.38	19.31	22.5	22.26	27.57	33.34	21.83	20.08	24.62	21.93
Merged-chr2-154765842-3	chr2	154765710	154765910	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25300.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	14.94	10.82	17.11	22.12	3.27	5.96	8.97	6.64	19.87	20.59	13.57	20.99
Merged-chr9-94617340-3	chr9	94617265	94617465	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52527.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	21.0	28.93	34.8	14.08	44.18	34.18	29.56	26.33	29.11	45.19	32.66	19.42
Merged-chr7-16582403-3	chr7	16582316	16582516	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31408.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	29.48	16.85	22.82	34.99	15.96	14.74	14.62	27.79	22.42	15.06	20.1	17.54
Merged-chr2-18694308-6	chr2	18694193	18694393	+	997.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4729.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	13.73	15.85	15.4	22.93	11.86	15.37	21.26	9.9	14.95	18.08	18.09	21.93
Merged-chr1-155006723-3	chr1	155006613	155006813	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76551.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	10.9	17.61	17.68	6.03	20.05	33.24	13.95	16.91	27.93	16.07	30.15	13.47
Merged-chr11-9535014-3	chr11	9534909	9535109	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	343067.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	17.36	7.29	23.96	16.89	13.91	12.54	14.62	23.58	14.55	18.08	17.59	13.47
Merged-chr9-85413989-3	chr9	85413868	85414068	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86818.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	16.15	14.09	10.27	18.5	13.5	16.62	15.94	27.64	28.72	26.11	32.66	16.29
Merged-chr8-84832354-3	chr8	84832234	84832434	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	52.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	22.61	26.91	19.97	21.32	20.46	22.89	12.29	16.26	15.93	27.62	16.58	10.96
Merged-chr4-141737055-3	chr4	141736954	141737154	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-9621.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	20.19	24.4	19.4	22.12	36.82	38.26	17.27	37.32	21.44	12.55	26.63	12.22
Merged-chr11-53737214-3	chr11	53737109	53737309	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16415.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	27.05	34.46	21.11	19.71	38.46	47.35	19.6	22.99	55.07	52.22	36.68	22.87
Merged-chr12-102283116-3	chr12	102282948	102283148	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161365)	promoter-TSS (NM_001161365)	-26.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	17.77	14.34	7.42	29.36	22.91	18.19	18.93	23.22	18.88	18.58	15.58	5.01
Merged-chr17-33920399-3	chr17	33920284	33920484	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009318, exon 3 of 8)	exon (NM_009318, exon 3 of 8)	906.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	39.17	51.31	29.66	14.08	38.05	32.93	25.58	14.83	36.19	57.74	48.74	22.56
Merged-chr16-90426359-3	chr16	90426261	90426461	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	39964.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	29.07	29.68	18.25	38.61	57.27	32.3	31.22	50.27	52.32	48.7	50.25	34.46
Merged-chr7-19359557-3	chr7	19359448	19359648	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-65.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	41.19	37.98	15.97	40.22	29.05	38.26	36.54	22.96	26.36	32.64	18.09	22.56
Merged-chr5-138194340-3	chr5	138194275	138194475	+	997.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	61.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	21.8	19.12	18.25	27.35	14.73	25.71	25.24	17.16	19.08	21.09	12.56	23.18
Merged-chr18-32359362-4	chr18	32359191	32359391	+	997.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045403, exon 3 of 3)	non-coding (NR_045403, exon 3 of 3)	-17926.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	16.15	21.13	17.68	13.27	24.55	23.83	14.62	15.73	13.57	22.59	11.05	19.42
Merged-chr9-7774763-3	chr9	7774660	7774860	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9630.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	29.88	16.6	31.38	25.34	23.32	26.65	19.6	26.64	20.85	19.58	21.61	16.29
Merged-chr18-80468118-3	chr18	80468015	80468215	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1552.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	25.04	12.07	14.83	24.53	20.46	11.92	13.29	22.96	18.49	16.57	19.6	15.35
Merged-chr5-66088895-3	chr5	66088793	66088993	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9286.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	46.84	29.43	17.68	8.04	24.96	52.68	13.29	14.16	45.43	61.26	46.23	15.04
Merged-chr1-172313041-3	chr1	172312917	172313117	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	650.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	13.33	24.9	17.11	12.07	17.59	32.61	17.27	18.08	22.82	16.07	12.56	14.41
Merged-chr5-148550548-3	chr5	148550454	148550654	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1119.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	28.67	12.83	27.38	21.72	14.73	17.25	10.3	24.28	21.24	22.09	30.65	16.29
Merged-chr2-152802384-3	chr2	152802285	152802485	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	B2_Mm2|SINE|B2	26104.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	58.55	30.94	70.17	57.11	43.36	43.9	49.16	42.36	38.16	14.56	21.61	14.72
Merged-chr10-44704350-3	chr10	44704265	44704465	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-245617.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	11.71	31.19	25.1	28.15	23.73	23.2	13.62	22.99	35.6	25.11	34.17	18.17
Merged-chr6-50299241-3	chr6	50299125	50299325	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 21 of 21)	intron (NM_027881, intron 21 of 21)	-37456.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	13.73	15.85	26.81	16.49	26.59	17.87	18.93	19.4	35.6	25.11	46.73	24.43
Merged-chr14-75016009-3	chr14	75015905	75016105	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198642)	promoter-TSS (NM_198642)	-22.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	18.98	14.59	19.97	13.27	12.27	19.44	13.62	12.42	22.03	25.61	17.59	20.05
Merged-chr8-116732893-3	chr8	116732728	116732928	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029441, exon 1 of 7)	5' UTR (NM_029441, exon 1 of 7)	163.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	12.92	15.85	18.25	29.76	21.27	11.92	17.61	11.58	29.31	30.63	34.17	17.23
Merged-chr13-46930012-3	chr13	46929889	46930089	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-271.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	23.42	18.11	14.83	15.28	13.91	16.93	8.97	11.69	17.9	22.09	24.12	15.04
Merged-chr13-105266910-3	chr13	105266794	105266994	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 2 of 7)	intron (NM_001360891, intron 2 of 7)	26120.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	20.59	18.36	12.55	18.9	33.14	20.07	5.31	28.21	26.95	19.58	25.12	10.96
Merged-chr6-72113477-3	chr6	72113370	72113570	+	997.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9470.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	26.25	29.18	39.93	18.9	22.5	40.14	14.62	14.36	33.83	50.21	23.62	10.65
Merged-chr11-86582851-3	chr11	86582754	86582954	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	1304.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	29.48	20.63	18.25	19.71	11.45	21.95	9.3	20.27	26.55	30.13	21.1	26.63
Merged-chr7-141466256-3	chr7	141466149	141466349	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025103, exon 10 of 10)	3' UTR (NM_001025103, exon 10 of 10)	-1113.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	25.84	25.66	14.26	16.09	43.77	36.06	16.94	31.79	28.72	34.14	66.33	20.36
Merged-chrX-100637617-3	chrX	100637517	100637717	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008446, intron 4 of 29)	intron (NM_008446, intron 4 of 29)	11552.0	NM_008446	16571.0	Mm.383091	NM_008446	ENSMUSG00000034311	Kif4	AI323435|D330050K22Rik|Kns4	kinesin family member 4	protein-coding	18.17	19.62	17.11	12.87	20.46	37.94	27.57	21.5	43.47	30.63	39.7	14.41
Merged-chr7-43423258-3	chr7	43423138	43423338	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6863.0	NM_177693	233187.0	Mm.267027	NM_177693	ENSMUSG00000093639	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	17.36	20.12	14.26	21.32	33.55	24.46	24.25	21.93	22.23	15.06	23.62	10.96
Merged-chr8-120104854-3	chr8	120104756	120104956	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3384.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	12.11	9.56	18.25	20.11	20.86	27.59	31.22	41.61	27.93	15.06	38.19	24.12
Merged-chr17-34898386-4	chr17	34898301	34898501	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286573)	promoter-TSS (NM_001286573)	-91.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	12.92	17.36	9.13	16.89	11.45	21.64	13.62	13.6	18.69	23.1	18.59	18.48
Merged-chr18-20714028-3	chr18	20713914	20714114	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32390.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	20.59	23.39	27.95	23.33	17.18	18.19	13.95	23.19	16.72	17.07	37.69	12.84
Merged-chr3-21988280-3	chr3	21988111	21988311	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88441.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	20.19	10.06	11.98	22.12	25.77	10.03	30.89	36.84	12.19	18.58	23.11	12.53
Merged-chr14-52004253-3	chr14	52004125	52004325	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198249, intron 21 of 23)	intron (NM_198249, intron 21 of 23)	10333.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	22.21	10.56	31.38	42.23	23.73	17.25	10.96	18.84	33.83	29.12	26.63	26.0
Merged-chr17-78366284-3	chr17	78366200	78366400	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	51852.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	19.38	15.09	37.65	40.22	26.59	21.64	49.83	55.91	15.54	17.07	40.7	26.0
Merged-chr5-104979375-3	chr5	104979267	104979467	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	3350.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	16.15	17.1	26.24	36.6	41.73	17.87	31.22	44.41	26.75	18.58	32.16	20.68
Merged-chr12-54404342-2	chr12	54404259	54404459	+	997.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-13041.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	5.65	4.28	7.42	8.45	15.14	14.42	10.96	19.65	17.31	19.08	20.1	14.41
Merged-chr3-137956059-3	chr3	137955950	137956150	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	25499.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	21.8	27.92	20.54	15.28	20.46	42.02	35.21	34.77	43.86	34.65	22.11	14.41
Merged-chr17-34204523-3	chr17	34204430	34204630	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	51.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	32.3	20.37	21.68	30.16	23.73	30.73	8.3	21.2	29.7	24.6	32.16	12.84
Merged-chr5-149265056-3	chr5	149264960	149265160	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308462)	promoter-TSS (NM_001308462)	56.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	22.61	11.32	22.82	10.46	27.0	18.19	10.96	25.01	25.37	28.62	28.64	17.86
Merged-chr2-30604943-3	chr2	30604855	30605055	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	9911.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	37.15	29.43	26.24	24.13	20.05	41.08	19.27	25.37	42.88	34.14	25.63	11.28
Merged-chr2-93941879-3	chr2	93941787	93941987	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15213.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	27.05	15.34	18.83	26.55	21.68	23.83	21.59	38.92	24.78	14.56	36.68	22.24
Merged-chr6-21985094-3	chr6	21984988	21985188	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	-822.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	17.36	23.39	27.38	30.16	30.68	34.49	14.95	34.23	33.44	36.65	21.1	26.94
Merged-chr17-5796073-3	chr17	5795965	5796165	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2592.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	24.23	24.15	19.4	24.94	27.82	37.0	12.29	29.22	33.63	23.6	33.16	21.93
Merged-chr9-104239272-3	chr9	104239174	104239374	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	23656.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	14.13	11.07	18.25	24.13	23.32	26.65	10.96	28.35	28.32	19.58	27.64	16.29
Merged-chr9-40325832-3	chr9	40325715	40325915	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-4492.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	20.19	18.11	22.25	11.26	23.32	21.01	22.26	36.59	21.83	15.06	16.58	19.11
Merged-chr2-165856190-3	chr2	165856080	165856280	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1993.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	23.02	12.83	39.36	22.52	36.0	25.71	18.93	34.18	27.14	31.13	37.69	31.64
Merged-chr1-38129218-3	chr1	38129149	38129349	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359288, intron 1 of 25)	CpG	417.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	18.17	16.6	13.69	17.29	18.41	17.25	18.27	15.9	20.65	20.59	19.09	8.77
Merged-chr1-181846001-3	chr1	181845883	181846083	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3582.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	15.34	16.35	22.82	24.53	12.27	20.38	16.28	28.01	24.0	17.07	42.21	14.1
Merged-chr1-156684204-2	chr1	156684102	156684302	+	997.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145413, intron 7 of 7)	LTR41B|LTR|ERVL	-9863.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	13.73	17.61	31.38	20.91	20.86	11.6	11.63	22.26	6.29	3.01	2.01	2.19
Merged-chr1-131700580-3	chr1	131700484	131700684	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	11889.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	30.28	41.5	53.05	61.54	15.55	14.42	8.97	13.91	70.61	41.17	74.87	36.03
Merged-chr9-65533069-3	chr9	65532936	65533136	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47051.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	23.42	19.12	21.11	24.13	10.23	13.48	12.62	11.61	43.27	21.59	19.09	15.98
Merged-chr11-53794123-3	chr11	53794016	53794216	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	23643.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	16.96	13.58	21.11	14.48	19.23	19.44	16.61	17.69	16.33	23.1	16.08	19.42
Merged-chr10-86637099-3	chr10	86636988	86637188	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48439.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	18.98	13.08	15.4	12.87	19.23	23.83	19.6	13.35	17.51	12.55	18.09	18.48
Merged-chr16-91367267-3	chr16	91367156	91367356	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5527.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	21.4	18.11	33.66	15.69	51.55	24.15	26.57	41.75	20.06	19.08	17.59	15.66
Merged-chr11-22858232-3	chr11	22858142	22858342	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1493.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	41.99	48.8	54.19	22.12	39.68	51.43	24.58	28.15	28.91	49.21	34.67	14.1
Merged-chr8-127441340-2	chr8	127441244	127441444	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141692.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.23	3.27	7.42	4.02	13.91	26.34	13.29	23.72	240.16	231.97	269.33	121.23
Merged-chr4-129512276-5	chr4	129512165	129512365	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	18.57	25.91	15.97	14.08	12.68	49.54	15.94	4.88	25.77	27.62	13.57	11.59
Merged-chr16-21474825-1	chr16	21474725	21474925	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 15 of 46)	intron (NM_001081366, intron 15 of 46)	51707.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	6.06	4.28	1.14	15.28	5.73	2.2	8.3	12.98	0.2	2.51	2.51	0.94
Merged-chr11-69062939-4	chr11	69062821	69063021	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3146.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	20.59	22.89	9.7	24.13	24.96	30.1	19.93	19.82	18.88	24.1	18.09	18.17
Merged-chr3-152315842-3	chr3	152315718	152315918	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162375, intron 7 of 13)	intron (NM_001162375, intron 7 of 13)	24589.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	18.17	13.83	8.56	15.28	20.05	24.77	10.63	20.78	38.75	29.12	58.29	26.0
Merged-chr10-79506873-3	chr10	79506793	79506993	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24197.0	NR_105874	102465548.0		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	18.17	25.4	30.23	30.57	16.77	15.37	11.29	28.96	22.62	27.62	30.65	20.99
Merged-chr2-60089337-3	chr2	60089239	60089439	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	36401.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	21.4	28.17	22.82	24.13	27.0	35.12	15.94	21.79	35.8	31.13	41.2	9.71
Merged-chr7-143008192-3	chr7	143008098	143008298	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	2539.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	12.52	19.62	25.1	16.09	18.0	16.93	14.28	22.57	35.4	22.59	25.63	20.99
Merged-chr2-84531834-1	chr2	84531734	84531934	+	997.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-24961.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	9.29	7.55	14.26	10.46	10.64	7.53	6.31	10.65	20.46	10.04	13.57	5.64
Merged-chr7-66226068-3	chr7	66225963	66226163	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	116548.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	19.79	35.72	21.68	29.36	12.27	20.7	12.95	20.33	36.58	16.57	25.63	16.29
Merged-chr5-65490010-3	chr5	65489909	65490109	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	2826.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	19.79	17.1	37.65	21.72	19.64	43.27	26.91	30.59	45.43	20.59	43.21	23.18
Merged-chr18-80257780-3	chr18	80257650	80257850	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025861, intron 2 of 5)	B4|SINE|B4	1444.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	23.82	23.64	27.38	28.96	12.68	12.54	16.28	17.86	9.24	4.02	13.06	6.89
Merged-chr2-130954551-3	chr2	130954464	130954664	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	48069.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	16.96	15.59	25.67	29.36	30.27	18.5	24.91	33.76	23.8	27.11	18.09	22.87
Merged-chr15-76307401-3	chr15	76307307	76307507	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153122)	promoter-TSS (NM_153122)	-162.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	18.17	18.11	15.97	30.16	28.23	23.83	25.58	32.41	35.99	24.6	39.19	18.48
Merged-chr15-95851812-3	chr15	95851706	95851906	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-21734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	19.38	10.82	26.24	17.29	18.82	24.46	32.55	38.38	23.21	15.06	23.11	11.28
Merged-chr1-131052719-4	chr1	131052652	131052852	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008551)	TTS (NM_008551)	32907.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	10.9	11.82	5.7	7.64	2.86	5.96	3.65	4.43	10.62	14.06	9.55	11.28
Merged-chr2-59395524-6	chr2	59395410	59395610	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C1|LTR|ERVK	-8828.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	12.11	9.06	12.55	8.45	11.45	16.93	15.94	6.73	20.65	25.61	19.6	14.1
Merged-chr1-156024618-1	chr1	156024518	156024718	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	10199.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	10.9	6.04	6.85	7.64	8.18	9.09	3.99	20.16	1.97	0.0	0.5	4.7
Merged-chr16-11550537-1	chr16	11550437	11550637	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 14 of 20)	intron (NM_028964, intron 14 of 20)	144889.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.23	2.01	7.99	7.64	3.27	4.39	8.64	7.99	7.67	6.53	10.55	2.19
Merged-chr5-122894971-3	chr5	122894874	122895074	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	5376.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	21.4	20.12	41.64	37.0	27.41	16.31	11.96	26.83	14.75	18.58	18.59	20.68
Merged-chr8-125669923-3	chr8	125669838	125670038	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028908, exon 1 of 1)	exon (NM_028908, exon 1 of 1)	120.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	14.54	14.84	7.42	18.1	23.73	17.25	23.25	14.66	27.93	15.57	32.66	19.11
Merged-chr3-109340609-3	chr3	109340521	109340721	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-62.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	12.92	28.67	26.81	16.89	16.77	24.77	16.94	17.83	19.87	33.14	23.62	38.53
Merged-chr14-47359785-3	chr14	47359685	47359885	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-14075.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	18.98	13.83	17.11	11.66	32.32	14.42	17.27	25.29	27.14	26.11	36.68	23.81
Merged-chr8-85482015-3	chr8	85481919	85482119	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10598.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	15.75	13.58	14.26	15.28	30.68	45.78	20.93	36.22	47.6	27.62	46.73	26.31
Merged-chr6-108568078-3	chr6	108567984	108568184	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55083.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	19.79	15.09	43.35	30.57	33.96	29.48	43.85	56.41	35.8	16.07	40.7	26.31
Merged-chr8-104219270-3	chr8	104219163	104219363	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001141922)	TTS (NM_001141922)	29295.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	45.63	37.48	15.4	30.57	64.23	55.82	40.52	41.47	36.19	30.63	43.21	25.37
Merged-chr3-8957023-3	chr3	8956934	8957134	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	7112.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	26.25	16.35	40.5	53.89	54.0	50.17	43.18	64.35	41.89	18.08	63.82	25.06
Merged-chr13-21181003-3	chr13	21180895	21181095	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009054, intron 1 of 7)	CpG	1064.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	18.57	16.85	25.1	26.14	24.55	19.13	21.26	19.4	25.37	23.1	18.59	17.23
Merged-chrX-167850380-3	chrX	167850275	167850475	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359072, intron 1 of 16)	L1MA4A|LINE|L1	4702.0	NM_001290428	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	21.0	12.83	29.09	38.21	26.18	33.55	33.88	57.62	34.03	26.61	46.23	21.93
Merged-chr12-86888238-3	chr12	86888132	86888332	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3418.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	29.48	28.93	39.93	33.38	31.09	29.48	12.62	17.94	27.73	42.68	45.73	36.34
Merged-chr5-121204536-3	chr5	121204459	121204659	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011290)	promoter-TSS (NM_011290)	58.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	16.96	19.62	29.09	17.7	12.68	20.7	15.28	8.47	22.03	12.55	18.59	10.96
Merged-chrX-9447362-3	chrX	9447277	9447477	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 8 of 12)	B1F|SINE|Alu	21947.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	13.73	12.32	25.1	32.98	38.46	27.59	29.23	49.01	25.18	14.06	29.65	17.54
Merged-chr19-23134253-3	chr19	23134220	23134420	+	996.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6906.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	20.19	12.58	10.84	11.26	36.0	51.43	36.21	38.16	34.81	40.67	39.7	15.98
Merged-chr14-45657349-4	chr14	45657324	45657524	+	996.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039593)	TTS (NR_039593)	629.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	12.52	14.09	14.83	18.1	13.09	16.93	15.28	12.59	30.49	24.1	18.09	13.16
Merged-chr9-21728534-3	chr9	21728434	21728634	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252659, intron 1 of 17)	RMER4B|LTR|ERVK	4958.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	28.67	30.43	38.79	17.29	21.68	33.24	13.95	25.93	50.55	42.18	25.63	12.22
Merged-chr2-169958925-3	chr2	169958826	169959026	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4261.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	28.67	14.59	51.91	59.93	78.55	47.04	78.06	72.95	52.32	39.67	99.49	57.01
Merged-chr17-80728633-3	chr17	80728524	80728724	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-599.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	13.73	9.31	16.54	11.26	27.41	24.15	8.3	24.34	27.93	22.09	34.17	18.17
Merged-chr10-75668041-3	chr10	75667947	75668147	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	CpG	-24039.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	13.33	13.83	22.25	13.67	20.05	24.15	19.27	14.64	14.36	22.09	24.62	19.42
Merged-chr8-78820094-3	chr8	78819995	78820195	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001191004, intron 1 of 4)	MIR3|SINE|MIR	1057.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	13.73	13.58	9.13	8.45	18.0	11.6	11.96	10.46	21.64	17.07	21.1	15.98
Merged-chr5-72263833-3	chr5	72263717	72263917	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	60474.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	23.02	12.83	17.68	13.27	22.91	18.81	12.62	19.68	28.13	21.59	29.65	12.53
Merged-chr18-77704508-3	chr18	77704416	77704616	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178670, intron 1 of 4)	L1MC5|LINE|L1	9494.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	30.28	31.69	33.66	29.36	50.32	42.02	24.25	43.51	44.84	49.71	21.61	32.58
Merged-chr10-59886674-3	chr10	59886581	59886781	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	7090.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	21.0	15.59	11.41	5.23	19.23	33.87	13.95	11.3	16.33	16.57	22.61	14.1
Merged-chr7-118595386-3	chr7	118595294	118595494	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331204, intron 2 of 2)	intron (NM_001331204, intron 2 of 2)	-1903.0	NM_001105252	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	14.13	21.63	25.67	18.9	11.86	17.87	13.62	28.82	45.04	30.13	24.62	24.75
Merged-chr7-43995002-3	chr7	43994896	43995096	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010640)	promoter-TSS (NM_010640)	-881.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	27.05	21.13	28.52	33.78	20.46	31.04	33.88	14.92	25.18	18.08	20.1	22.24
Merged-chr4-134460453-3	chr4	134460355	134460555	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-7865.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	17.77	21.88	16.54	15.28	15.55	22.58	20.26	26.8	17.9	8.03	18.59	20.36
Merged-chr13-45964086-7	chr13	45963973	45964173	+	996.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 1 of 6)	CpG	918.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	23.02	25.66	11.98	16.49	13.5	25.09	16.61	13.18	27.73	26.11	29.65	22.24
Merged-chr3-145750551-2	chr3	145750445	145750645	+	996.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-8147.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	4.85	6.54	3.99	4.02	19.23	22.58	12.95	12.73	17.31	16.07	17.59	6.58
Merged-chr2-89296660-1	chr2	89296560	89296760	+	996.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146789, exon 1 of 1)	exon (NM_146789, exon 1 of 1)	608.0	NM_146789	258785.0	Mm.377689	NM_146789	ENSMUSG00000075094	Olfr1230	MOR237-1	olfactory receptor 1230	protein-coding	0.81	1.26	2.28	0.8	13.91	15.68	11.63	14.22	0.79	0.5	1.0	2.19
Merged-chr3-51185613-3	chr3	51185515	51185715	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38832.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	17.36	25.15	33.66	26.14	50.32	31.04	30.23	62.13	87.92	61.76	126.63	65.47
Merged-chr11-70563868-1	chr11	70563768	70563968	+	996.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	987.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	7.67	4.28	1.14	8.45	17.18	10.98	13.95	13.07	5.31	6.53	14.57	6.89
Merged-chr4-102657426-3	chr4	102657344	102657544	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67601.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	35.13	24.15	42.21	49.47	40.09	24.77	32.55	42.81	24.78	24.6	33.67	10.34
Merged-chr14-118180423-3	chr14	118180316	118180516	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43289.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	22.21	17.36	12.55	22.12	22.91	20.7	26.57	25.26	22.62	18.58	30.15	16.29
Merged-chr5-100588339-3	chr5	100588226	100588426	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16121.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	34.32	20.37	43.35	43.44	21.27	19.13	25.24	30.87	49.17	31.63	36.68	13.47
Merged-chr11-106159479-3	chr11	106159334	106159534	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356459, exon 2 of 5)	5' UTR (NM_001356459, exon 2 of 5)	493.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	21.8	21.88	15.97	10.05	31.91	27.28	19.93	13.15	31.27	51.72	33.16	24.75
Merged-chr15-99702105-3	chr15	99702008	99702208	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031842)	promoter-TSS (NM_031842)	-179.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	38.76	20.63	23.96	38.21	31.5	34.49	10.63	27.81	21.44	22.59	42.21	24.12
Merged-chr1-39493814-3	chr1	39493722	39493922	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-15067.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	25.84	19.87	22.82	43.84	20.46	22.26	12.29	25.21	22.82	7.53	9.55	17.86
Merged-chr9-122901852-1	chr9	122901752	122901952	+	996.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1394.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	0.0	0.75	2.28	1.61	0.0	1.88	0.66	1.26	16.13	21.09	20.6	19.11
Merged-chr6-128856428-3	chr6	128856329	128856529	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30114.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	18.57	11.32	27.38	31.37	31.09	14.74	18.27	42.03	13.57	15.57	25.63	22.24
Merged-chr7-19338227-3	chr7	19338117	19338317	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6854.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	16.96	16.85	19.97	19.31	14.32	19.76	13.62	14.5	32.26	24.1	46.23	27.57
Merged-chr2-164929234-3	chr2	164929127	164929327	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17477.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	14.94	18.11	39.93	24.13	20.86	15.37	24.25	22.82	19.87	16.57	21.1	15.98
Merged-chr13-100197148-3	chr13	100197045	100197245	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	4977.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	15.75	21.13	19.4	22.52	31.09	31.36	19.6	15.53	31.47	18.08	25.12	19.11
Merged-chr6-34620433-3	chr6	34620314	34620514	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	MLTR14|LTR|ERV1	21910.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	47.65	40.5	61.61	30.57	55.23	110.69	61.45	73.85	33.24	15.06	28.64	27.88
Merged-chr14-66812461-3	chr14	66812363	66812563	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	56137.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	21.4	12.07	21.68	39.42	23.73	22.58	22.59	35.1	18.1	22.59	28.14	16.92
Merged-chr17-55749968-3	chr17	55749864	55750064	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139138)	promoter-TSS (NM_139138)	-20.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	34.32	26.91	33.09	33.78	20.86	37.32	40.86	36.95	34.03	13.56	34.17	14.41
Merged-chr11-77606971-3	chr11	77606867	77607067	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	848.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	18.98	17.1	11.41	7.24	13.09	33.24	11.29	10.91	27.34	23.6	23.62	10.96
Merged-chr12-86892607-3	chr12	86892459	86892659	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7745.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	26.25	14.59	14.83	26.55	17.59	21.32	7.64	12.9	24.78	30.13	45.22	20.05
Merged-chr7-110190251-3	chr7	110190141	110190341	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31462.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	20.59	17.61	13.69	10.86	31.91	50.8	17.27	21.08	47.6	41.17	45.22	16.29
Merged-chr6-13860078-3	chr6	13859977	13860177	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11441.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	15.75	19.12	21.11	32.98	17.18	20.07	16.94	28.18	22.82	34.65	19.6	17.54
Merged-chr5-62756014-3	chr5	62755908	62756108	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	10169.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	14.94	38.99	26.24	14.88	34.36	48.29	21.26	25.21	41.5	33.64	34.67	16.29
Merged-chr3-146156400-3	chr3	146156280	146156480	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6206.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	39.57	53.83	33.66	20.51	50.73	72.75	38.53	42.22	62.74	62.26	51.76	16.29
Merged-chr5-101765772-3	chr5	101765654	101765854	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	624.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	16.96	18.36	29.66	18.1	23.32	23.52	17.27	18.9	17.11	20.59	16.58	13.47
Merged-chr19-6273978-3	chr19	6273871	6274071	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2925.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	32.71	32.45	19.97	2.41	37.23	74.94	21.59	10.85	48.58	54.23	29.65	8.14
Merged-chr5-125177874-3	chr5	125177777	125177977	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	CpG	1337.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	14.54	11.07	13.12	20.11	13.91	14.42	13.95	16.68	12.39	14.56	14.07	15.04
Merged-chr5-108001123-3	chr5	108001019	108001219	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14042.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	13.73	17.86	26.81	17.7	20.05	25.4	6.98	16.74	25.96	16.07	29.65	17.86
Merged-chr1-62736697-3	chr1	62736593	62736793	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	33376.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	41.59	65.65	46.78	28.56	17.59	37.63	16.94	10.15	32.85	43.18	43.72	20.05
Merged-chrX-74282732-3	chrX	74282629	74282829	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172154)	promoter-TSS (NM_001172154)	11.0	NM_001242615	66826.0	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	18.57	19.62	15.4	11.66	29.86	23.52	10.3	17.72	26.16	36.65	30.15	19.74
Merged-chr4-88641171-3	chr4	88641052	88641252	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3307.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	21.0	21.63	10.84	16.89	22.91	24.15	28.9	23.38	25.77	21.59	36.68	33.83
Merged-chr7-25220674-3	chr7	25220579	25220779	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-746.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	24.23	20.12	20.54	13.27	24.96	24.77	9.97	16.57	29.11	29.12	28.64	18.8
Merged-chr19-17144356-3	chr19	17144247	17144447	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	188229.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	22.61	14.84	38.79	42.23	50.73	18.5	33.55	42.5	20.85	25.11	24.12	12.84
Merged-chr17-3082392-3	chr17	3082287	3082487	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	1796.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	20.59	38.23	25.67	30.97	39.68	36.06	52.15	25.26	16.92	15.57	21.1	13.16
Merged-chr3-30595585-3	chr3	30595487	30595687	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	4283.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	45.63	46.03	17.68	16.89	29.86	68.67	31.89	22.91	48.98	67.28	34.17	24.75
Merged-chr1-181211511-4	chr1	181211338	181211538	+	996.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145514, exon 1 of 14)	5' UTR (NM_145514, exon 1 of 14)	540.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	12.92	9.81	17.11	14.08	19.23	19.13	16.28	10.35	15.74	26.61	35.17	17.23
Merged-chr14-121992665-1	chr14	121992565	121992765	+	996.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-27472.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.83	0.5	5.7	0.0	0.41	0.94	0.0	1.85	9.44	9.04	12.06	5.95
Merged-chr16-16086960-3	chr16	16086841	16087041	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	59910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	22.21	14.09	29.09	42.23	22.5	16.62	12.62	21.87	16.72	14.06	33.67	13.47
Merged-chr15-58554238-3	chr15	58554184	58554384	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138816.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	18.17	15.34	14.83	23.73	11.86	17.87	7.31	21.62	16.92	16.07	23.62	10.65
Merged-chr16-38550192-3	chr16	38550084	38550284	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001300827)	promoter-TSS (NM_001300827)	72.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	19.79	20.63	15.4	15.28	28.64	21.64	25.58	26.47	23.6	21.09	18.09	12.84
Merged-chr2-90650175-3	chr2	90650058	90650258	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27057.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	46.44	29.68	35.37	57.51	27.82	23.52	19.6	44.5	21.83	15.57	42.21	25.69
Merged-chr1-75458346-3	chr1	75458249	75458449	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	7839.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	5.65	14.34	19.97	20.91	15.14	25.4	20.26	28.4	18.1	22.09	26.63	23.49
Merged-chr3-157535089-3	chr3	157534979	157535179	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	914.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	17.77	11.82	17.68	11.26	14.73	12.23	20.59	15.95	21.24	16.07	37.69	15.98
Merged-chr13-45266424-3	chr13	45266311	45266511	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-123331.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	17.77	16.1	18.25	19.31	32.73	26.34	15.94	29.83	20.26	31.63	31.15	12.84
Merged-chr7-123429994-3	chr7	123429898	123430098	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	22181.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	16.15	19.62	53.62	24.53	50.32	45.47	48.5	56.94	46.62	35.65	76.88	38.85
Merged-chr8-82402811-3	chr8	82402698	82402898	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-212.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	38.76	42.01	34.8	16.09	32.32	52.05	33.22	14.3	54.09	32.13	25.63	9.4
Merged-chr10-40229549-3	chr10	40229464	40229664	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17415.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	6.06	14.34	19.4	12.87	16.77	18.19	26.57	25.99	16.92	15.57	25.63	10.96
Merged-chr6-22347699-3	chr6	22347601	22347801	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	8380.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	16.56	14.09	33.09	18.5	24.96	37.94	27.57	34.37	22.03	21.59	39.19	14.1
Merged-chr10-77391278-3	chr10	77391179	77391379	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	L1MC3|LINE|L1	26994.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	15.34	5.28	11.41	20.11	27.0	29.48	35.54	34.96	20.85	16.57	31.15	24.75
Merged-chr6-54952739-3	chr6	54952629	54952829	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	B4A|SINE|B4	18932.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	16.15	21.63	16.54	17.7	24.55	23.2	12.95	24.2	53.3	30.63	54.77	33.21
Merged-chr12-113154184-3	chr12	113154095	113154295	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007763)	TTS (NM_007763)	2183.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	23.02	29.68	15.97	28.15	32.32	37.32	30.23	41.3	28.72	28.12	42.21	36.34
Merged-chr11-57518572-3	chr11	57518452	57518652	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	92.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	23.42	31.19	17.68	14.48	29.46	32.61	15.61	23.07	27.14	20.08	24.62	21.62
Merged-chr14-51941390-3	chr14	51941274	51941474	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18601.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	48.05	35.72	47.35	29.76	45.41	51.43	36.54	32.13	28.72	31.63	41.2	13.47
Merged-chr11-31718282-1	chr11	31718182	31718382	+	996.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46420.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	1.62	5.53	6.28	11.66	13.09	13.48	38.2	46.43	6.69	5.02	11.05	8.46
Merged-chr9-104057317-2	chr9	104057212	104057412	+	996.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025692, intron 3 of 11)	intron (NM_025692, intron 3 of 11)	5809.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	16.96	13.83	24.53	15.69	22.91	21.95	16.61	33.79	1.38	2.51	5.02	3.13
Merged-chr10-128092750-4	chr10	128092642	128092842	+	996.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-41.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	25.04	11.57	17.68	17.29	20.05	25.09	6.98	14.75	32.45	29.12	57.28	24.75
Merged-chr12-111416936-3	chr12	111416855	111417055	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028807)	promoter-TSS (NM_028807)	-475.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	27.46	39.99	23.39	22.52	15.55	44.21	21.59	14.89	43.66	46.19	55.27	14.41
Merged-chr12-102450618-3	chr12	102450529	102450729	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10816.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	55.32	29.43	102.11	113.02	58.09	50.8	125.56	135.31	15.54	13.56	38.19	23.81
Merged-chr1-72255617-3	chr1	72255517	72255717	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11624.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	15.75	14.09	15.97	23.73	15.14	20.7	15.28	27.7	25.37	24.6	33.67	14.41
Merged-chr16-56659014-3	chr16	56658921	56659121	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014399, intron 16 of 27)	intron (NM_001014399, intron 16 of 27)	58429.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	28.27	28.42	25.67	30.57	40.91	22.58	30.23	35.52	25.37	20.08	37.69	10.96
Merged-chr15-84232209-5	chr15	84232056	84232256	+	996.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133167, exon 1 of 13)	exon (NM_133167, exon 1 of 13)	113.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	8.88	7.8	14.83	11.66	10.64	15.68	26.57	6.2	20.26	18.58	27.64	18.48
Merged-chr3-96273728-2	chr3	96273625	96273825	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4025.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	18.17	12.58	15.4	18.1	11.45	14.11	10.63	18.9	2.95	0.5	0.0	1.57
Merged-chr1-74376727-3	chr1	74376580	74376780	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	1477.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	15.75	15.85	27.95	16.89	11.86	22.58	23.92	18.31	21.64	23.6	25.12	26.0
Merged-chr12-105013261-3	chr12	105013143	105013343	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3434.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	37.96	19.62	23.39	28.96	39.27	50.8	52.48	49.43	18.1	16.07	28.14	10.96
Merged-chr4-126305622-3	chr4	126305525	126305725	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199473, intron 2 of 3)	L1MB8|LINE|L1	16078.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	49.67	53.32	77.01	69.98	14.32	12.86	15.28	11.58	16.72	20.08	21.1	12.22
Merged-chr6-83101601-3	chr6	83101547	83101747	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081266, exon 1 of 9)	5' UTR (NM_001081266, exon 1 of 9)	131.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	13.33	20.63	14.26	14.08	35.18	19.13	33.55	21.62	20.26	32.64	26.63	22.56
Merged-chr10-119056724-3	chr10	119056605	119056805	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6206.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	30.28	11.57	19.4	28.56	29.86	29.16	20.59	42.31	34.81	38.66	44.72	20.36
Merged-chr14-118594674-3	chr14	118594588	118594788	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	-2216.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	16.56	11.07	16.54	39.82	22.09	22.58	16.61	37.91	18.88	20.08	32.66	18.8
Merged-chr18-42513389-3	chr18	42513307	42513507	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	1920.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	15.34	7.04	9.13	24.13	15.55	14.11	9.63	24.67	18.29	14.06	36.18	20.05
Merged-chr2-21187492-1	chr2	21187392	21187592	+	996.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	17873.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	14.54	7.04	6.28	10.86	13.5	17.56	13.62	13.74	22.82	8.03	9.04	3.45
Merged-chr16-21652854-3	chr16	21652801	21653001	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	41764.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	13.33	10.56	18.83	17.7	22.5	20.07	20.59	32.16	30.09	22.09	34.17	17.23
Merged-chr8-61621472-2	chr8	61621405	61621605	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-30336.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	9.29	11.57	2.28	11.26	20.46	13.17	13.29	13.09	2.16	11.05	3.52	0.94
Merged-chr13-113267408-3	chr13	113267296	113267496	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57737.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	13.33	12.83	24.53	26.95	24.14	19.76	12.29	33.53	11.21	18.58	25.12	15.04
Merged-chr19-41442566-3	chr19	41442475	41442675	+	996.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57505.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	33.11	23.14	22.82	31.37	16.77	21.32	10.3	22.71	16.92	14.56	17.08	6.89
Merged-chr11-53748821-3	chr11	53748719	53748919	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	14835.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	20.59	17.36	20.54	16.49	39.68	45.15	16.61	31.79	42.29	26.11	49.75	18.17
Merged-chr2-164456998-3	chr2	164456895	164457095	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3976.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	25.04	25.15	18.25	6.03	23.32	40.45	21.26	5.5	38.75	40.17	38.19	14.41
Merged-chr12-40017160-3	chr12	40017063	40017263	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20213.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	16.56	13.33	14.83	19.31	43.36	29.79	19.93	44.86	26.16	24.6	32.16	26.31
Merged-chr2-19059470-3	chr2	19059386	19059586	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61167.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	25.04	12.07	19.97	18.9	23.32	16.93	14.95	19.71	16.92	15.06	24.12	17.54
Merged-chr13-110395876-3	chr13	110395771	110395971	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152804, intron 1 of 13)	intron (NM_152804, intron 1 of 13)	827.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	10.09	14.59	21.68	13.67	22.91	21.32	29.9	40.04	27.14	16.07	44.22	30.7
Merged-chr4-140963122-3	chr4	140963014	140963214	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 1 of 7)	Lx8|LINE|L1	1843.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	16.15	13.58	21.11	13.27	13.09	17.25	9.97	20.27	32.26	20.08	32.16	14.41
Merged-chr6-48708270-3	chr6	48708178	48708378	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153175)	promoter-TSS (NM_153175)	-34.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	37.55	27.67	30.23	33.38	18.82	16.31	15.61	20.89	38.16	20.59	26.63	23.18
Merged-chr2-4652116-3	chr2	4652008	4652208	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356451)	promoter-TSS (NM_001356451)	27.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	26.25	26.91	14.83	22.52	20.86	21.01	23.92	18.59	34.62	23.6	23.11	15.66
Merged-chr10-14086370-3	chr10	14086275	14086475	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119996.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	33.11	20.12	15.97	7.24	13.91	35.75	17.94	9.81	28.32	22.59	19.6	5.33
Merged-chr1-180764087-3	chr1	180763998	180764198	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38055.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	16.56	14.34	12.55	17.29	32.73	25.09	17.61	28.88	29.31	41.67	31.15	19.74
Merged-chr14-45552396-3	chr14	45552299	45552499	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	8689.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	25.44	21.38	29.09	17.29	13.5	30.1	26.91	27.7	27.93	18.08	19.09	10.65
Merged-chr9-95552221-3	chr9	95552123	95552323	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7594.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	24.63	11.32	19.4	12.87	15.14	16.31	21.59	21.28	17.7	18.08	22.11	11.9
Merged-chr18-39141181-3	chr18	39141099	39141299	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	MTD|LTR|ERVL-MaLR	148054.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	14.54	11.57	24.53	26.95	22.91	20.7	22.26	33.17	19.87	18.58	42.71	13.16
Merged-chr18-20713596-3	chr18	20713503	20713703	+	996.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32801.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	19.79	14.59	38.22	19.31	23.32	30.73	19.6	32.97	29.31	14.56	30.15	23.81
Merged-chr12-36381943-4	chr12	36381814	36382014	+	996.34375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-233.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	9.29	25.15	18.25	18.5	17.18	17.56	26.91	24.03	20.85	22.09	18.59	23.18
Merged-chr9-70282323-3	chr9	70282258	70282458	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	75008.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	14.13	21.13	30.8	15.69	24.96	24.46	16.61	17.07	15.34	7.03	14.07	8.46
Merged-chr6-108306436-3	chr6	108306314	108306514	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	93318.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	16.15	20.63	22.82	20.91	15.55	16.93	15.28	20.78	24.0	22.59	17.59	11.28
Merged-chr2-66143461-3	chr2	66143381	66143581	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18688.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	18.98	16.85	21.11	20.11	29.86	24.77	15.28	35.75	22.62	24.6	15.58	11.59
Merged-chr19-61084267-3	chr19	61084187	61084387	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56553.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	14.94	13.33	18.25	10.05	14.32	20.07	19.6	21.76	9.44	17.07	17.59	17.23
Merged-chr6-128798897-3	chr6	128798784	128798984	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-10243.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	30.69	19.37	37.65	24.53	23.32	18.5	20.59	14.47	33.24	31.13	36.18	26.0
Merged-chr3-101836296-3	chr3	101836208	101836408	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-85.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	14.94	24.4	15.4	17.7	18.0	18.19	21.92	25.51	32.06	30.63	37.69	19.11
Merged-chr5-147046489-1	chr5	147046389	147046589	+	996.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	30083.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.27	4.53	25.1	8.04	25.77	4.39	10.96	28.77	2.16	0.0	3.52	3.45
Merged-chr6-122990082-3	chr6	122989970	122990170	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005860)	promoter-TSS (NM_001005860)	-297.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	31.9	17.36	34.23	17.29	33.55	24.77	17.94	36.98	23.41	24.6	31.15	15.35
Merged-chr10-127324713-3	chr10	127324609	127324809	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-933.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	32.71	17.61	21.68	13.67	37.64	27.59	11.96	21.2	47.01	32.64	36.18	35.4
Merged-chr7-107683834-3	chr7	107683729	107683929	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-8014.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	23.82	18.11	43.93	32.58	30.27	26.97	28.23	60.5	26.55	16.57	44.72	22.56
Merged-chr18-35058496-1	chr18	35058396	35058596	+	996.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60416.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	4.85	5.03	8.56	5.63	2.45	0.94	4.65	13.37	10.23	4.02	25.63	11.9
Merged-chr9-123949634-3	chr9	123949551	123949751	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	19041.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	27.86	12.32	31.38	29.76	30.27	25.09	18.27	34.71	26.16	20.59	25.12	14.72
Merged-chr8-70552029-1	chr8	70551929	70552129	+	996.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	12354.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.25	2.52	6.28	8.45	13.5	15.99	11.63	20.58	7.67	6.03	8.54	4.7
Merged-chr15-75894431-3	chr15	75894346	75894546	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172607)	promoter-TSS (NM_172607)	35.0	NM_172607	223646.0	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	15.34	20.63	9.7	23.73	20.46	25.4	13.29	15.76	22.62	12.55	16.08	10.96
Merged-chr3-126945052-1	chr3	126944952	126945152	+	996.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001327939, exon 37 of 46)	exon (NM_001327939, exon 37 of 46)	-1666.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.21	0.0	1.14	2.82	0.0	3.14	0.0	0.9	29.7	14.06	36.18	13.16
Merged-chr10-87842682-3	chr10	87842588	87842788	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-15577.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	18.17	10.56	14.83	15.28	17.18	29.48	19.27	20.89	30.88	29.12	31.15	26.63
Merged-chr10-41584693-3	chr10	41584593	41584793	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 33 of 47)	MLT1L|LTR|ERVL-MaLR	16677.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	15.75	8.8	33.09	16.09	29.05	31.04	26.24	31.26	30.49	25.11	27.64	30.39
Merged-chr4-119293075-3	chr4	119292971	119293171	+	996.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1442.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	18.57	19.87	11.98	23.73	15.55	20.07	11.29	17.36	24.59	24.6	17.08	16.29
Merged-chr11-107341576-3	chr11	107341489	107341689	+	996.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	129131.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	15.34	11.32	19.4	17.7	24.96	17.87	16.28	34.01	34.81	34.14	31.15	15.98
Merged-chr7-19318732-4	chr7	19318624	19318824	+	996.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8679.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	14.54	16.35	14.83	16.09	14.73	23.2	22.92	17.72	16.72	15.06	17.59	21.62
Merged-chr17-33930989-5	chr17	33930873	33931073	+	996.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1079.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	12.52	13.33	11.41	8.04	20.46	18.19	12.62	10.88	29.31	34.65	14.57	14.41
Merged-chr11-94989846-3	chr11	94989744	94989944	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1368.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	31.9	19.12	17.68	14.48	36.82	32.93	20.26	26.3	38.16	26.11	43.72	24.43
Merged-chr1-153894464-3	chr1	153894371	153894571	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2825.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	44.42	29.93	28.52	38.61	39.68	34.18	38.86	43.77	17.9	14.56	27.64	11.59
Merged-chr15-102247696-3	chr15	102247614	102247814	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011244, intron 3 of 9)	CpG	-1214.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	28.27	55.59	21.11	30.16	20.05	41.71	14.95	16.23	33.83	32.13	24.62	22.87
Merged-chrX-10715784-3	chrX	10715676	10715876	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1589.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	17.77	15.85	17.68	12.47	33.14	39.51	32.22	20.3	37.57	21.59	33.67	13.78
Merged-chr19-43571189-3	chr19	43571102	43571302	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41123.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	19.79	13.33	4.56	24.53	21.68	21.95	14.95	21.48	39.93	15.57	46.73	16.92
Merged-chr2-120481721-3	chr2	120481621	120481821	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109761, intron 2 of 20)	intron (NM_001109761, intron 2 of 20)	4812.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	14.94	13.58	28.52	16.09	21.68	32.93	32.22	27.84	16.13	19.08	22.61	14.72
Merged-chr15-101375124-3	chr15	101375021	101375221	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4996.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	31.09	25.66	22.82	32.18	27.82	33.55	29.23	39.06	25.96	17.57	22.11	11.9
Merged-chr15-101981507-3	chr15	101981403	101981603	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22839.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	15.75	11.82	15.97	20.51	33.55	26.97	37.54	38.86	21.83	18.58	34.17	23.81
Merged-chr4-138434676-3	chr4	138434576	138434776	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026689)	promoter-TSS (NM_026689)	4.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	22.61	24.4	20.54	19.31	30.68	33.87	8.97	17.07	30.49	46.19	39.19	29.76
Merged-chr16-50437935-3	chr16	50437843	50438043	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-5477.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	21.4	17.86	22.25	25.74	16.36	26.34	19.27	30.81	33.63	16.07	28.64	22.87
Merged-chr10-81551753-3	chr10	81551663	81551863	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6717.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	20.59	21.88	18.25	6.44	17.59	28.54	11.96	23.24	28.52	28.62	31.15	15.04
Merged-chr11-120951037-3	chr11	120950935	120951135	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038654, intron 1 of 4)	CpG	1968.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	12.92	16.6	19.4	16.49	23.32	21.64	10.63	21.0	39.14	23.1	40.2	21.3
Merged-chr1-172490437-3	chr1	172490353	172490553	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033608, intron 5 of 20)	intron (NM_033608, intron 5 of 20)	8136.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	31.9	48.04	33.09	17.7	34.77	57.07	28.57	27.34	76.51	54.23	38.19	22.56
Merged-chr14-68655869-3	chr14	68655773	68655973	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183366)	promoter-TSS (NM_183366)	-31.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	22.21	13.33	24.53	14.88	25.36	38.88	29.56	47.3	21.83	29.62	23.62	14.41
Merged-chr4-87944554-3	chr4	87944463	87944663	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 2 of 10)	L1ME3A|LINE|L1	88844.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	12.11	14.59	14.83	20.51	22.91	27.59	14.95	30.84	32.45	21.09	40.2	13.47
Merged-chr8-126921038-3	chr8	126920947	126921147	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24874.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	30.28	32.45	20.54	23.73	45.0	61.77	17.61	23.89	54.48	44.69	62.81	28.19
Merged-chr11-103171038-3	chr11	103170929	103171129	+	996.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077698)	promoter-TSS (NM_001077698)	-109.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	22.61	13.08	23.96	16.89	24.14	21.32	11.63	23.8	21.24	18.08	20.6	17.86
Merged-chr4-33347273-3	chr4	33347177	33347377	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 8 of 15)	intron (NM_001305273, intron 8 of 15)	36966.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	15.75	11.57	19.4	24.53	40.91	46.41	33.55	71.22	29.5	26.61	46.73	29.76
Merged-chr4-139382535-3	chr4	139382449	139382649	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1890.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	20.59	14.09	13.69	19.71	15.14	19.13	13.62	23.89	22.42	30.13	23.62	13.78
Merged-chr15-97673094-3	chr15	97672998	97673198	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32724.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	27.46	17.61	25.1	28.56	20.86	26.97	21.26	26.24	22.42	13.56	26.13	13.78
Merged-chr10-80101221-3	chr10	80101120	80101320	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-33.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	18.98	14.34	24.53	7.64	16.36	29.79	9.63	21.98	47.01	30.63	31.15	23.81
Merged-chr9-13518166-3	chr9	13518066	13518266	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86805.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	27.86	11.82	21.68	14.88	31.5	26.97	30.89	41.07	22.82	17.57	25.63	13.78
Merged-chr9-32521615-3	chr9	32521539	32521739	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	L2b|LINE|L2	19813.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	38.36	19.62	31.38	44.24	24.96	29.79	24.25	52.96	24.19	13.05	41.71	21.93
Merged-chr8-35400592-3	chr8	35400486	35400686	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24845.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	15.34	19.87	31.95	16.89	23.73	46.41	24.91	23.61	47.8	41.17	73.86	37.91
Merged-chr3-31390147-3	chr3	31390037	31390237	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-79818.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	13.73	17.86	38.22	34.59	46.64	39.2	36.87	72.93	51.34	52.22	56.28	47.3
Merged-chr6-3386794-3	chr6	3386695	3386895	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	12776.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	24.63	23.64	28.52	15.28	22.91	22.89	8.3	21.64	36.98	28.62	33.67	29.76
Merged-chr11-54492759-2	chr11	54492664	54492864	+	996.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 9 of 17)	intron (NM_173753, intron 9 of 17)	-30081.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.46	2.77	2.85	2.01	30.68	30.1	18.93	28.46	22.23	16.07	30.15	15.35
Merged-chr1-120123164-2	chr1	120123062	120123262	+	996.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1975.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	16.15	10.56	15.97	22.12	13.5	12.54	14.95	17.33	20.85	8.03	8.54	5.33
Merged-chr17-17624059-3	chr17	17623990	17624190	+	996.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	CpG	399.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	9.69	19.37	19.4	27.75	19.23	21.32	16.94	26.02	24.59	18.08	24.12	20.05
Merged-chr9-70830328-3	chr9	70830249	70830449	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	104459.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	25.04	23.9	19.4	26.95	25.36	29.79	13.29	16.63	35.6	24.1	26.13	16.92
Merged-chr11-117724717-3	chr11	117724609	117724809	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54939.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	21.0	16.1	23.39	20.51	25.36	23.52	19.27	29.24	18.29	19.08	27.64	10.65
Merged-chr12-112724233-3	chr12	112724122	112724322	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024602, intron 1 of 18)	MER45A|DNA|hAT-Tip100	2048.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	20.59	27.92	13.69	20.51	17.18	24.77	17.27	11.72	17.51	19.58	19.6	15.04
Merged-chr9-95036374-3	chr9	95036236	95036436	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 11 of 15)	MTE2a|LTR|ERVL-MaLR	284507.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	12.52	14.59	22.82	32.98	22.5	19.44	26.57	49.96	24.0	19.58	20.1	20.05
Merged-chr4-119536784-3	chr4	119536690	119536890	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004178, intron 1 of 3)	MT2B2|LTR|ERVL	1979.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	14.94	18.61	22.82	15.28	15.55	19.44	16.61	18.84	24.78	24.6	22.11	13.16
Merged-chr8-84811066-3	chr8	84810941	84811141	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10703.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	37.96	27.67	25.67	24.53	44.18	37.63	15.61	31.35	46.03	48.7	31.66	15.98
Merged-chr15-78248603-3	chr15	78248524	78248724	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3813.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	27.46	18.61	25.67	20.91	36.0	45.47	12.95	27.56	20.26	19.58	26.13	11.28
Merged-chr13-99100687-3	chr13	99100573	99100773	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12752.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	13.33	10.06	20.54	27.35	32.32	17.56	21.92	46.4	14.55	26.11	27.64	17.54
Merged-chr9-99179868-3	chr9	99179776	99179976	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39665.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	19.79	27.17	65.6	28.15	36.41	28.54	37.87	42.98	49.37	36.65	57.28	28.51
Merged-chr6-70714475-3	chr6	70714388	70714588	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77687.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	17.77	18.11	29.09	28.96	28.64	26.65	15.94	27.67	21.24	16.07	27.64	15.98
Merged-chr4-99182778-1	chr4	99182678	99182878	+	996.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11156.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.46	4.28	6.85	2.41	4.09	1.25	4.65	7.35	22.82	12.05	9.04	4.7
Merged-chr8-80916677-1	chr8	80916577	80916777	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-36158.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	6.46	5.53	3.99	4.83	14.73	20.07	10.3	11.5	8.85	3.01	15.58	2.82
Merged-chr4-6366491-3	chr4	6366390	6366590	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	810.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	18.98	22.64	13.69	13.27	32.32	36.37	24.58	35.47	47.6	27.62	41.2	25.06
Merged-chr11-75653406-3	chr11	75653309	75653509	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	1259.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	21.8	22.89	15.97	13.27	23.32	18.19	9.3	11.75	27.54	14.06	32.66	15.98
Merged-chr3-90254640-1	chr3	90254540	90254740	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357152, intron 1 of 9)	CpG	782.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	11.71	20.63	17.68	12.47	20.46	29.79	13.95	11.61	17.51	27.62	21.1	16.92
Merged-chr16-45736912-1	chr16	45736812	45737012	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001272070, exon 4 of 6)	exon (NM_001272070, exon 4 of 6)	6043.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	3.63	6.54	11.41	2.01	3.68	8.47	2.99	10.96	1.77	5.02	3.01	5.95
Merged-chr7-129401461-3	chr7	129401371	129401571	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144377.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	19.79	19.62	17.11	22.52	33.14	22.58	25.91	34.32	33.63	24.1	44.72	37.28
Merged-chr5-137630775-3	chr5	137630657	137630857	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1634.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	16.56	14.34	25.1	14.88	26.59	18.5	20.59	20.07	26.55	22.59	17.08	12.22
Merged-chr12-46857007-1	chr12	46856907	46857107	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-38232.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.5	1.14	0.0	4.91	4.39	7.97	8.61	5.51	1.51	10.55	1.88
Merged-chr7-30273477-1	chr7	30273377	30273577	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152437, intron 3 of 32)	intron (NR_152437, intron 3 of 32)	-6617.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	4.85	2.52	2.85	3.22	3.68	2.2	8.64	9.81	0.2	0.0	0.0	0.63
Merged-chr10-93168194-3	chr10	93168093	93168293	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	5408.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	24.23	22.39	26.81	34.59	24.96	29.16	27.57	39.93	21.64	13.05	25.63	15.66
Merged-chr5-33352156-3	chr5	33352054	33352254	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021500, intron 1 of 8)	ID_B1|SINE|B4	16582.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	25.84	20.37	10.27	18.5	18.0	17.87	7.97	21.31	29.31	40.17	26.63	18.17
Merged-chr5-135570674-1	chr5	135570574	135570774	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2375.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	1.21	0.25	1.14	4.42	4.09	2.2	7.97	9.28	4.52	2.01	3.52	5.95
Merged-chr13-9277332-5	chr13	9277296	9277496	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	871.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	20.19	21.13	22.25	20.11	14.32	26.03	25.91	15.5	24.19	28.12	29.65	17.23
Merged-chr11-79711101-4	chr11	79711041	79711241	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029579)	promoter-TSS (NR_029579)	-828.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	16.56	12.32	23.96	10.86	14.73	17.87	28.23	18.03	12.19	22.09	12.56	22.56
Merged-chr1-180222281-1	chr1	180222181	180222381	+	996.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	23669.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.23	4.53	1.71	0.8	3.68	6.9	5.31	2.66	16.33	13.05	5.53	4.7
Merged-chr17-65884360-1	chr17	65884260	65884460	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009067, intron 1 of 9)	CpG	563.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	13.73	6.54	5.7	18.5	8.59	8.47	13.62	7.12	7.67	6.03	4.52	9.4
Merged-chr1-185187494-1	chr1	185187394	185187594	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16674.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	3.63	6.04	3.42	2.41	4.09	2.51	1.66	7.46	0.39	0.5	2.51	0.31
Merged-chr10-49049451-2	chr10	49049347	49049547	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	738490.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	1.62	9.81	1.71	5.23	49.09	45.15	56.8	49.99	12.98	21.59	11.05	9.71
Merged-chr13-105426171-3	chr13	105426067	105426267	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-17526.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	14.13	19.62	4.56	14.88	20.05	25.71	13.29	16.15	27.54	22.59	34.67	15.35
Merged-chr14-40932463-1	chr14	40932363	40932563	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	15746.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	10.09	0.5	2.28	10.46	5.32	7.53	6.64	12.56	2.16	0.0	6.53	2.19
Merged-chr16-35047464-3	chr16	35047364	35047564	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25043.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	20.19	13.83	17.11	16.49	21.27	19.44	12.29	18.06	25.57	19.08	36.68	11.59
Merged-chr7-100663376-3	chr7	100663257	100663457	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013746)	promoter-TSS (NM_013746)	-963.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	16.15	26.91	20.54	21.32	17.18	26.03	10.96	15.73	14.36	15.06	22.11	14.1
Merged-chrX-135738931-3	chrX	135738817	135739017	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3775.0	NM_001004359	67298.0	Mm.271980	NM_026081	ENSMUSG00000043384	Gprasp1	2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding	16.15	20.63	37.65	35.8	25.77	14.42	23.58	25.09	27.73	17.57	29.65	22.87
Merged-chr15-78305712-3	chr15	78305605	78305805	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007781)	promoter-TSS (NM_007781)	16.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	17.36	8.05	19.4	16.89	16.36	17.56	16.61	20.33	12.78	22.59	22.61	13.16
Merged-chr6-136808840-3	chr6	136808727	136808927	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	579.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	23.82	25.66	35.37	18.1	13.91	33.24	11.63	15.62	25.57	21.09	47.23	20.68
Merged-chr1-153492059-3	chr1	153491967	153492167	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4407.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	27.05	27.17	27.95	25.34	56.87	37.94	34.88	52.18	13.37	14.56	32.66	15.35
Merged-chr6-129049275-3	chr6	129049179	129049379	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024263, intron 1 of 4)	intron (NR_024263, intron 1 of 4)	3378.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	14.94	21.13	18.83	22.52	20.05	32.61	16.61	30.87	17.9	18.08	19.09	17.86
Merged-chr4-97777762-3	chr4	97777692	97777892	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122953, exon 1 of 10)	5' UTR (NM_001122953, exon 1 of 10)	166.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	20.19	12.58	14.83	20.51	21.27	17.87	36.21	25.29	20.46	16.07	23.62	15.98
Merged-chr11-79120290-3	chr11	79120170	79120370	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26203.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	23.02	18.61	26.81	13.27	37.64	35.12	19.93	21.22	24.78	28.62	33.16	23.49
Merged-chr9-107569038-3	chr9	107568944	107569144	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-119.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	33.52	28.67	17.11	25.34	30.68	44.53	30.89	27.34	23.01	35.65	42.21	27.25
Merged-chr19-4409286-3	chr19	4409185	4409385	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12208.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	18.98	14.59	26.24	14.88	26.18	31.67	17.94	23.47	29.9	28.12	40.7	32.27
Merged-chr5-43235303-3	chr5	43235204	43235404	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	50.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	12.11	10.31	11.98	20.91	20.86	23.83	25.91	27.22	18.29	19.08	38.69	19.42
Merged-chr17-87155376-2	chr17	87155287	87155487	+	995.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B1|LTR|ERVL	39555.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	15.34	8.3	34.23	15.28	13.5	18.81	14.62	32.02	0.2	0.5	0.5	0.63
Merged-chr8-25062107-3	chr8	25061989	25062189	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 5 of 11)	intron (NM_031257, intron 5 of 11)	-23127.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	16.56	15.59	14.26	19.31	14.73	16.31	13.95	18.28	20.06	22.59	16.58	14.72
Merged-chr11-20742475-3	chr11	20742376	20742576	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-920.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	16.15	17.61	19.4	15.69	20.86	17.87	15.28	30.56	31.08	17.07	39.19	23.81
Merged-chr5-64376672-3	chr5	64376568	64376768	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	91274.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	19.38	14.34	30.8	20.51	27.0	19.13	10.3	15.73	33.83	18.58	35.68	21.3
Merged-chr3-65927909-3	chr3	65927813	65928013	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30336.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	32.71	26.91	39.36	13.67	47.05	33.24	32.22	31.21	39.14	41.67	28.64	20.05
Merged-chr16-75962188-3	chr16	75962082	75962282	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38602.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	16.96	13.83	7.42	12.07	18.82	23.83	28.9	18.81	21.64	18.08	35.68	16.92
Merged-chr1-79684239-3	chr1	79684152	79684352	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-12280.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	35.13	19.37	28.52	42.23	14.32	14.42	26.91	43.71	32.26	26.61	40.7	18.48
Merged-chr3-90433050-3	chr3	90432965	90433165	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145540, exon 1 of 30)	5' UTR (NM_145540, exon 1 of 30)	571.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	12.52	12.07	5.13	18.1	24.55	21.64	24.58	11.69	10.62	11.05	25.63	15.66
Merged-chr7-116597109-3	chr7	116597018	116597218	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92749.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	20.19	11.82	27.38	35.8	25.77	16.62	21.92	35.22	33.04	30.63	41.2	23.49
Merged-chr5-112950424-3	chr5	112950327	112950527	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54065.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	17.36	14.09	26.24	20.51	19.23	24.77	17.27	20.75	18.88	18.08	16.08	19.42
Merged-chr7-16891775-3	chr7	16891677	16891877	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-9.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	21.4	17.61	15.4	20.91	21.27	18.19	21.26	20.1	28.72	13.56	31.15	13.16
Merged-chr17-83682140-3	chr17	83682028	83682228	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24035.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	12.11	4.53	16.54	17.7	6.14	3.76	14.28	15.79	18.49	9.54	33.67	15.35
Merged-chr4-120914028-3	chr4	120913933	120914133	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	10972.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	23.02	26.16	21.68	20.51	14.73	26.97	12.95	17.3	19.28	26.11	27.64	18.8
Merged-chr6-128437913-3	chr6	128437836	128438036	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	720.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	8.08	13.08	6.28	16.89	16.77	10.03	15.94	15.31	13.96	13.05	16.08	17.54
Merged-chr12-84847691-3	chr12	84847614	84847814	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28088.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	22.21	27.17	17.11	5.63	19.23	33.24	29.23	13.99	18.29	19.08	22.61	11.59
Merged-chr3-67463816-3	chr3	67463711	67463911	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016753)	promoter-TSS (NM_016753)	96.0	NM_016753	17035.0	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	21.0	23.9	22.25	16.09	11.05	21.32	17.61	17.86	14.36	19.08	17.59	14.1
Merged-chrX-160510449-3	chrX	160510362	160510562	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358966, intron 1 of 33)	MLTR25A|LTR|ERVK	8300.0	NM_001177878	110094.0	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	12.11	16.85	17.68	30.16	17.59	28.85	23.58	31.43	26.55	27.11	31.15	21.93
Merged-chrX-14628784-3	chrX	14628689	14628889	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	417641.0	NM_001034100	385328.0	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	29.07	17.36	19.4	28.56	20.46	22.89	17.27	27.17	18.49	15.06	28.64	11.59
Merged-chr3-8734040-3	chr3	8733978	8734178	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67040.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	12.11	14.59	15.97	16.89	15.55	15.05	11.96	19.77	17.51	7.03	19.09	12.22
Merged-chr7-143706870-3	chr7	143706771	143706971	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199227, intron 7 of 21)	intron (NM_001199227, intron 7 of 21)	-20996.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	31.5	23.9	18.83	26.95	29.86	28.85	13.29	22.46	35.4	16.57	39.7	24.12
Merged-chr3-130796691-3	chr3	130796592	130796792	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66294.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	21.8	22.13	22.25	12.47	19.64	31.67	25.91	41.07	28.52	33.64	37.69	28.19
Merged-chr10-118814989-3	chr10	118814893	118815093	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	53910.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	14.13	9.56	17.11	20.11	21.27	21.32	33.22	15.93	31.67	29.12	33.16	11.28
Merged-chr7-127376097-3	chr7	127376002	127376202	+	995.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175560)	promoter-TSS (NM_175560)	-52.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	30.28	26.41	14.83	37.81	36.82	51.43	19.6	31.12	46.81	54.23	55.27	22.56
Merged-chr16-55821064-3	chr16	55820981	55821181	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1057.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	23.02	15.09	15.97	13.67	12.27	26.03	16.94	18.98	29.9	31.63	29.65	12.53
Merged-chr11-69012518-3	chr11	69012400	69012600	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3411.0	NM_001281465	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	27.86	28.93	34.8	17.29	29.05	36.69	13.29	16.29	25.77	28.62	31.66	17.86
Merged-chr1-45902099-3	chr1	45902012	45902212	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	23482.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	14.94	13.83	18.25	28.15	29.46	20.7	32.55	40.37	18.49	16.57	25.63	12.84
Merged-chr5-76175241-3	chr5	76175148	76175348	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-8632.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	22.21	12.58	16.54	27.35	20.05	34.18	45.51	34.93	19.67	5.52	18.59	11.59
Merged-chr14-67098334-3	chr14	67098196	67098396	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25825.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	18.57	17.36	18.83	10.05	17.18	14.11	16.61	13.57	17.9	24.6	25.63	10.65
Merged-chr10-118081668-3	chr10	118081547	118081747	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60140.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	16.15	9.81	30.23	23.73	19.64	25.4	18.93	30.06	34.81	7.03	45.73	18.48
Merged-chr1-144307235-3	chr1	144307154	144307354	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58150.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	13.73	15.09	28.52	22.52	23.73	27.59	16.94	37.74	28.72	14.56	31.66	13.47
Merged-chr14-16379509-3	chr14	16379416	16379616	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	L1M4|LINE|L1	14310.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	26.25	16.85	12.55	8.04	19.64	19.13	21.26	21.45	26.36	29.12	21.61	24.43
Merged-chr11-85249582-2	chr11	85249481	85249681	+	995.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	14415.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	5.65	2.26	5.13	3.62	32.32	31.67	31.22	17.52	19.28	26.61	30.65	14.1
Merged-chr2-167939735-3	chr2	167939652	167939852	+	995.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	7425.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	41.99	54.33	44.5	17.7	40.09	79.96	58.46	30.64	44.25	49.71	65.83	9.71
Merged-chr16-3714911-3	chr16	3714810	3715010	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	3214.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	19.79	20.63	19.97	14.88	57.68	79.33	80.05	66.79	68.45	71.3	84.92	37.28
Merged-chr1-152622011-3	chr1	152621897	152622097	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	3220.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	16.15	8.3	19.97	10.86	26.18	21.64	22.92	30.2	24.0	29.62	23.11	14.72
Merged-chr3-101596346-3	chr3	101596256	101596456	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	8351.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	30.28	18.36	44.5	28.56	18.82	23.52	16.61	38.94	43.07	17.57	36.18	27.25
Merged-chr16-10835079-3	chr16	10834978	10835178	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162932)	promoter-TSS (NM_001162932)	19.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	21.8	12.58	26.24	12.87	15.14	21.95	13.95	21.93	31.67	20.59	38.69	15.04
Merged-chr2-144267842-3	chr2	144267744	144267944	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	-1642.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	15.34	15.09	22.82	35.39	31.5	29.16	35.21	64.85	32.85	15.57	41.2	52.32
Merged-chr5-35728512-3	chr5	35728429	35728629	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	747.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	16.56	17.1	22.82	14.08	13.91	22.58	26.91	40.01	38.55	27.11	51.76	43.23
Merged-chr13-99331676-1	chr13	99331576	99331776	+	995.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 6 of 9)	intron (NM_026873, intron 6 of 9)	13002.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	1.21	3.27	2.28	0.0	2.05	8.47	0.0	2.55	21.83	14.56	28.14	15.35
Merged-chr1-51494089-3	chr1	51494006	51494206	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15707.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	37.96	21.88	33.66	43.04	31.91	23.2	30.56	48.9	24.0	29.12	27.64	10.96
Merged-chr13-93718300-1	chr13	93718200	93718400	+	995.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028772, intron 13 of 15)	MTE2a|LTR|ERVL-MaLR	875.0	NR_045086	105364.0	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	0.0	0.0	0.0	1.61	0.82	0.0	1.0	0.42	17.11	17.57	19.6	14.72
Merged-chr11-115712580-3	chr11	115712518	115712718	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4021.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	16.96	8.55	29.09	16.89	10.23	10.66	10.96	8.05	8.26	12.05	14.57	11.9
Merged-chr4-137995549-3	chr4	137995443	137995643	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	2087.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	87.22	54.83	72.45	63.15	71.18	119.78	79.06	74.27	20.26	24.6	32.16	10.96
Merged-chr1-191270313-3	chr1	191270195	191270395	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45841.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	22.61	6.29	22.25	29.76	40.91	19.76	49.49	27.84	18.1	24.1	24.62	22.24
Merged-chr2-70992931-2	chr2	70992839	70993039	+	995.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 3 of 9)	B4A|SINE|B4	25435.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.63	8.8	31.95	7.24	13.09	5.64	16.61	25.71	22.82	15.57	19.09	14.41
Merged-chr8-11180069-2	chr8	11179966	11180166	+	995.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-132739.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	9.69	5.53	25.67	17.29	26.18	14.42	29.56	32.86	3.93	5.02	7.54	4.39
Merged-chr3-18624036-2	chr3	18623941	18624141	+	995.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143564.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	6.46	4.02	3.42	4.83	44.18	37.32	19.93	30.14	22.03	18.58	34.17	12.53
Merged-chr8-13159650-2	chr8	13159604	13159804	+	995.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	543.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	11.31	11.82	14.83	7.64	5.32	12.54	13.29	13.32	15.14	18.58	22.61	29.13
Merged-chr3-148961076-3	chr3	148960967	148961167	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6432.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	18.17	17.36	21.11	17.7	21.68	12.86	27.24	24.11	22.03	17.57	14.57	11.28
Merged-chr11-20532022-3	chr11	20531917	20532117	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11236.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	57.34	67.16	26.81	6.84	39.27	124.17	24.58	9.45	96.97	96.4	32.16	7.21
Merged-chr17-88557249-3	chr17	88557158	88557358	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 9 of 21)	intron (NM_028658, intron 9 of 21)	27134.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	17.77	19.87	16.54	14.08	25.77	21.95	16.28	22.74	27.34	34.14	29.65	23.81
Merged-chr2-91956114-3	chr2	91956010	91956210	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-5762.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	28.27	24.15	13.69	21.32	16.36	14.74	19.27	30.45	19.67	28.12	26.63	18.8
Merged-chr2-180115864-3	chr2	180115766	180115966	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3500.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	23.42	13.33	29.66	40.62	22.5	25.71	23.92	42.62	17.31	15.06	28.14	20.05
Merged-chr7-45830866-3	chr7	45830782	45830982	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153419)	promoter-TSS (NM_153419)	-93.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	33.92	29.93	17.11	23.73	35.59	44.84	21.92	23.55	27.93	34.65	30.15	17.23
Merged-chr11-102431231-3	chr11	102431110	102431310	+	995.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	888.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	14.13	18.11	16.54	6.03	15.14	30.1	4.98	9.64	20.85	34.65	19.6	15.04
Merged-chr9-107280309-1	chr9	107280209	107280409	+	995.5714109999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	9087.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.42	4.53	0.0	2.41	5.73	2.82	8.64	1.82	15.93	20.08	13.06	8.14
Merged-chrUn_JH584304-21705-1	chrUn_JH584304	21605	21805	+	995.5714109999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37984.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.49	11.55	12.56	10.02
Merged-chr15-31564071-3	chr15	31563987	31564187	+	995.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4746.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	16.96	9.31	19.4	22.52	15.14	14.74	26.24	20.58	11.6	16.57	21.1	13.47
Merged-chr2-166469165-3	chr2	166469080	166469280	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	21729.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	15.34	5.28	22.82	28.56	39.68	27.59	30.89	45.11	17.31	19.58	28.64	13.78
Merged-chr10-68136675-3	chr10	68136566	68136766	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142060.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	18.17	13.33	15.4	18.5	29.86	25.09	20.26	29.16	16.72	19.58	30.15	10.65
Merged-chr4-128883573-3	chr4	128883475	128883675	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-565.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	26.25	14.09	18.25	19.31	30.68	37.63	21.92	19.35	32.65	14.06	26.13	16.92
Merged-chr15-81481194-3	chr15	81481073	81481273	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14857.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	21.0	12.07	23.96	11.66	18.0	26.65	14.62	19.51	16.72	17.57	18.59	11.9
Merged-chr4-84884942-3	chr4	84884810	84885010	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175275, intron 1 of 25)	CpG	601.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	10.5	21.13	25.1	41.43	31.09	15.99	30.56	30.03	19.67	26.61	23.62	15.35
Merged-chr10-80199659-3	chr10	80199541	80199741	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	20159.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	18.17	17.36	19.97	20.51	20.05	20.07	8.97	18.81	25.96	23.6	34.67	15.98
Merged-chr7-19357345-3	chr7	19357250	19357450	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007948)	TTS (NM_007948)	2133.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	14.54	13.58	12.55	14.48	24.14	19.76	9.63	17.72	29.31	22.59	39.19	21.93
Merged-chrX-7657404-3	chrX	7657294	7657494	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290624)	promoter-TSS (NM_001290624)	15.0	NM_001290624	54630.0	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Pk3|Sfc16	prickle planar cell polarity protein 3	protein-coding	15.34	14.59	21.68	18.1	17.59	13.8	24.25	19.71	18.88	16.07	22.61	14.41
Merged-chr2-151741282-3	chr2	151741188	151741388	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305244)	promoter-TSS (NM_001305244)	22.0	NM_212446	228769.0	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	14.54	18.36	23.39	19.31	31.5	23.52	18.6	28.07	31.27	32.13	37.69	21.62
Merged-chr2-102900562-3	chr2	102900464	102900664	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1101.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	14.13	16.85	18.25	16.49	9.82	29.16	10.63	11.94	13.18	26.11	31.66	17.23
Merged-chr17-74017845-3	chr17	74017749	74017949	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	30067.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	18.57	14.09	17.68	15.28	31.09	19.76	18.27	26.33	31.08	38.16	50.25	23.81
Merged-chr8-83989436-3	chr8	83989347	83989547	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008854, intron 5 of 9)	intron (NM_008854, intron 5 of 9)	-8225.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	26.65	21.38	31.38	32.58	26.18	15.68	14.62	18.81	23.01	19.58	19.09	13.16
Merged-chr10-41665700-3	chr10	41665579	41665779	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 10 of 47)	L1MB2|LINE|L1	50784.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	14.94	16.85	14.83	20.11	28.64	17.87	20.59	14.89	20.65	19.58	29.65	12.53
Merged-chr9-58552268-3	chr9	58552157	58552357	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11317.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	28.27	19.62	23.39	14.48	26.18	52.37	20.26	29.19	46.42	39.16	50.75	14.41
Merged-chr6-48699127-3	chr6	48699050	48699250	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9094.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	48.46	30.43	31.38	43.84	9.82	21.64	28.9	21.31	17.51	17.07	20.6	15.35
Merged-chr11-67559769-2	chr11	67559655	67559855	+	995.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-26745.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.44	2.01	11.98	4.83	8.18	45.15	21.26	15.9	26.55	24.1	61.3	30.7
Merged-chr6-136939634-1	chr6	136939534	136939734	+	995.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-107.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	1.21	2.26	1.71	2.01	2.86	5.33	4.65	3.95	22.82	16.57	23.11	12.53
Merged-chr5-20951170-4	chr5	20951047	20951247	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	158.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	15.34	11.82	15.4	11.66	8.59	16.62	5.31	10.93	27.73	18.08	14.07	16.29
Merged-chr13-42254052-3	chr13	42253953	42254153	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47423.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	14.94	15.59	50.77	20.11	29.05	31.36	25.58	29.86	20.06	18.08	25.12	17.86
Merged-chr1-120969704-3	chr1	120969607	120969807	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117698.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	9.69	14.59	30.23	22.93	14.73	15.37	4.98	31.93	25.37	14.06	39.19	15.04
Merged-chr2-5702520-3	chr2	5702427	5702627	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	12235.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	17.77	21.88	33.09	41.43	15.96	19.76	18.6	38.38	25.37	16.07	23.62	13.16
Merged-chr11-106085010-2	chr11	106084911	106085111	+	995.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	CpG	109.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	13.73	11.32	11.41	10.46	16.77	15.68	9.97	13.88	24.59	19.58	29.65	17.54
Merged-chr2-166733091-3	chr2	166733007	166733207	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19275.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	11.71	20.88	19.4	21.32	27.0	33.24	16.61	23.44	17.51	21.59	24.62	11.59
Merged-chr5-123061475-3	chr5	123061329	123061529	+	995.4545289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-14413.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	19.38	24.15	10.84	25.74	7.77	11.29	11.63	5.55	16.92	20.59	14.57	18.17
Merged-chr1-144001462-3	chr1	144001280	144001480	+	995.4523929999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	2769.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	10.09	18.61	11.41	12.07	7.77	9.09	14.95	26.83	13.77	27.62	22.61	33.83
Merged-chr6-39206148-3	chr6	39205998	39206198	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033430, intron 1 of 19)	CpG	675.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	10.9	13.08	7.99	12.47	13.5	21.32	8.3	14.89	17.9	15.06	16.58	14.1
Merged-chr15-41685743-3	chr15	41685634	41685834	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-103261.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	23.82	18.36	25.1	14.88	26.59	33.55	17.61	46.18	21.05	20.59	27.64	13.47
Merged-chr8-11115387-3	chr8	11115283	11115483	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106953.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	38.76	30.69	34.8	37.0	83.05	65.22	64.44	68.55	23.41	39.16	39.7	12.22
Merged-chr5-18036083-3	chr5	18035990	18036190	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	73520.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	17.77	7.04	15.97	16.49	22.09	14.74	21.26	23.38	24.19	26.11	21.1	10.96
Merged-chr16-32164600-3	chr16	32164519	32164719	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	975.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	15.75	25.15	11.41	12.87	12.27	29.16	13.62	15.53	18.88	19.58	34.17	21.3
Merged-chr2-102976431-3	chr2	102976306	102976506	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-74741.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	13.73	10.06	25.67	15.28	31.5	44.53	39.2	34.46	48.58	59.75	74.37	19.42
Merged-chr5-3358935-3	chr5	3358847	3359047	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15054.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	17.36	14.09	19.4	22.52	18.0	20.7	21.59	13.21	30.09	28.12	26.13	13.47
Merged-chr17-49016380-3	chr17	49016283	49016483	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83801.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	23.82	30.94	38.79	14.88	33.14	35.43	16.28	20.64	38.16	29.62	46.23	15.66
Merged-chr16-10441530-3	chr16	10441437	10441637	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	L1MB2|LINE|L1	5825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	23.02	18.36	31.95	21.72	20.46	24.46	9.63	34.01	26.55	19.58	21.61	14.41
Merged-chr11-76399145-3	chr11	76399048	76399248	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008750)	promoter-TSS (NM_008750)	-7.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	36.75	15.09	27.95	26.14	20.05	21.01	13.95	17.5	28.32	28.62	32.16	12.84
Merged-chr5-9111923-3	chr5	9111802	9112002	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	11165.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	27.86	25.91	14.26	18.1	23.73	26.34	21.26	20.07	14.75	23.6	22.11	16.6
Merged-chr2-75770897-3	chr2	75770797	75770997	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61280.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	14.13	19.12	26.81	29.36	28.64	47.66	26.57	33.48	47.99	36.65	41.71	22.56
Merged-chr10-128322477-3	chr10	128322378	128322578	+	995.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	19.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	12.52	17.1	9.13	20.11	22.09	20.07	16.28	12.93	24.39	17.07	19.6	20.05
Merged-chr1-128245145-2	chr1	128245056	128245256	+	995.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356529, intron 1 of 12)	intron (NM_001356529, intron 1 of 12)	1019.0	NM_001356529	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	5.25	5.28	7.42	7.64	10.64	15.05	9.63	12.36	18.69	23.6	20.6	14.1
Merged-chr14-25548030-3	chr14	25547957	25548157	+	995.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	13618.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	13.33	14.84	15.4	24.94	17.18	44.21	35.87	33.76	19.47	9.54	26.63	11.59
Merged-chr1-78666174-3	chr1	78666077	78666277	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001136226, exon 4 of 4)	exon (NM_001136226, exon 4 of 4)	7737.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	17.36	12.58	39.36	37.0	54.82	31.36	48.16	74.13	17.31	16.57	29.65	5.01
Merged-chr4-35097040-3	chr4	35096946	35097146	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55009.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	26.65	13.08	26.81	30.57	42.96	28.85	36.54	48.45	15.93	16.57	28.64	12.53
Merged-chr1-86344533-3	chr1	86344436	86344636	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010880)	TTS (NM_010880)	6749.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	16.56	18.36	7.42	19.31	17.59	16.62	12.95	19.85	18.88	16.07	26.13	10.34
Merged-chr11-86724168-3	chr11	86724075	86724275	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 8 of 31)	intron (NM_001003908, intron 8 of 31)	33392.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	15.75	30.69	38.79	22.12	52.37	57.38	27.24	38.97	61.56	54.23	60.8	40.1
Merged-chr15-77798147-3	chr15	77798034	77798234	+	995.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41124.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	12.11	14.59	18.83	18.1	24.14	18.5	18.93	19.77	30.09	14.56	16.08	19.74
Merged-chr7-35086767-3	chr7	35086652	35086852	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30186.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	47.65	16.85	15.4	25.74	35.59	25.71	10.63	28.74	32.45	25.61	37.18	11.9
Merged-chr2-45108863-3	chr2	45108759	45108959	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	1418.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	27.86	15.85	17.68	4.02	19.64	31.98	28.9	12.14	27.14	31.13	37.69	13.16
Merged-chr10-118179011-1	chr10	118178911	118179111	+	995.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25953.0	NM_016971	50929.0	Mm.103585	NM_016971	ENSMUSG00000074695	Il22	IL-22|IL-22a|ILTIFa|Iltif	interleukin 22	protein-coding	4.85	5.53	2.28	2.82	13.91	5.33	11.96	18.53	2.75	9.54	10.55	9.08
Merged-chr16-57570732-3	chr16	57570639	57570839	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	21497.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	13.73	15.85	26.81	18.9	25.36	25.4	27.57	35.72	22.03	27.11	40.2	10.34
Merged-chr12-79885492-3	chr12	79885394	79885594	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	39239.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	16.96	19.37	23.96	24.53	20.46	33.55	25.24	23.02	22.62	17.57	34.17	10.02
Merged-chr5-151210265-1	chr5	151210165	151210365	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20072.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	15.34	9.81	6.85	13.67	7.36	11.29	11.29	13.04	16.72	15.06	25.12	12.53
Merged-chr8-13646898-3	chr8	13646781	13646981	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	30706.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	16.56	11.82	22.25	16.89	20.46	19.13	11.96	30.95	24.0	15.06	22.61	11.59
Merged-chr16-15862912-1	chr16	15862812	15863012	+	995.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029354, exon 1 of 3)	exon (NM_029354, exon 1 of 3)	457.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	7.27	4.78	10.27	10.05	9.82	12.86	13.29	12.76	13.96	13.05	16.58	14.41
Merged-chr6-135008412-3	chr6	135008312	135008512	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3200.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	27.86	19.12	33.66	20.11	21.27	20.07	12.62	30.14	14.16	4.52	23.62	20.05
Merged-chr2-167735083-3	chr2	167734977	167735177	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43900.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	18.57	12.32	25.67	16.49	17.59	23.83	26.57	28.46	30.88	27.62	30.65	27.25
Merged-chr10-22308349-3	chr10	22308252	22308452	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1632.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	51.69	47.79	38.79	29.36	51.55	60.21	25.24	34.01	19.47	17.57	18.09	8.46
Merged-chr12-85477929-3	chr12	85477846	85478046	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010234)	TTS (NM_010234)	4056.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	33.11	21.13	29.66	24.13	36.41	29.79	11.63	13.35	41.11	40.67	20.1	29.45
Merged-chr14-63050971-3	chr14	63050873	63051073	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3982.0	NM_001034910	619548.0	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	22.61	20.37	21.11	22.93	13.91	39.82	24.58	18.56	17.51	22.59	38.19	22.56
Merged-chr5-99487136-3	chr5	99487055	99487255	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	LTR33A|LTR|ERVL	-234228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	25.84	12.58	38.79	54.3	29.46	29.48	24.91	37.37	29.5	22.09	40.2	17.54
Merged-chr13-43785946-1	chr13	43785846	43786046	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	834.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	46.84	35.72	20.54	25.34	26.59	23.52	5.31	5.58	35.8	34.65	30.65	10.65
Merged-chr3-86224216-3	chr3	86224094	86224294	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	-496.0	NM_030695	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	19.38	10.82	15.97	12.07	35.18	42.33	23.25	34.65	28.91	32.64	45.73	18.8
Merged-chr5-115059128-3	chr5	115059031	115059231	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	47607.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	36.75	19.37	26.81	36.2	39.27	21.64	12.95	36.31	31.86	45.19	34.17	27.25
Merged-chr11-69692370-3	chr11	69692272	69692472	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011614, intron 5 of 6)	L2|LINE|L2	3726.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	7.27	10.31	23.39	22.12	21.68	34.49	41.19	46.63	20.85	14.06	24.62	18.48
Merged-chr4-126489925-3	chr4	126489807	126490007	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153177, exon 18 of 18)	3' UTR (NM_153177, exon 18 of 18)	-21324.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	25.44	11.57	40.5	22.52	13.91	25.71	12.62	20.16	27.73	24.1	18.59	13.16
Merged-chr5-103389603-3	chr5	103389496	103389696	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35596.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	18.57	12.83	22.25	26.95	25.77	17.56	21.26	22.15	15.54	16.57	18.09	7.83
Merged-chr3-31145940-4	chr3	31145832	31146032	+	995.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3988.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	12.92	10.56	6.28	11.26	8.18	16.31	13.29	15.39	12.19	11.55	15.58	9.71
Merged-chr1-180849730-3	chr1	180849635	180849835	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1416.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	46.03	36.72	31.38	16.09	60.55	72.44	48.5	60.98	91.07	79.83	71.35	50.44
Merged-chrX-48274834-3	chrX	48274743	48274943	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028276, exon 11 of 15)	exon (NM_028276, exon 11 of 15)	10583.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	17.36	14.59	25.1	15.28	27.41	22.58	21.92	45.67	23.6	26.11	52.76	27.57
Merged-chr11-83655871-3	chr11	83655785	83655985	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6507.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	24.63	20.12	24.53	16.09	24.55	19.44	16.94	15.53	43.27	40.17	19.6	18.17
Merged-chr7-44745320-3	chr7	44745219	44745419	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289839, intron 1 of 4)	intron (NM_001289839, intron 1 of 4)	3030.0	NM_001289836	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	29.07	22.13	30.8	28.96	31.5	27.91	18.6	28.96	29.11	27.62	29.14	12.22
Merged-chrX-41909854-3	chrX	41909764	41909964	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033422, intron 1 of 38)	intron (NM_001033422, intron 1 of 38)	2037.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	20.19	21.13	30.8	22.93	24.14	26.65	12.62	29.27	23.41	12.55	19.09	13.47
Merged-chr6-135192076-3	chr6	135191962	135192162	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040296, exon 4 of 5)	non-coding (NR_040296, exon 4 of 5)	3582.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	13.33	11.57	17.68	21.72	17.18	26.03	19.6	23.69	16.13	15.57	37.69	21.62
Merged-chr16-57606796-3	chr16	57606691	57606891	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	76.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	38.36	25.91	15.4	18.9	29.46	33.24	16.61	30.0	37.96	33.64	37.69	16.92
Merged-chr2-153357003-3	chr2	153356903	153357103	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	10864.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	14.13	28.17	30.23	17.29	37.64	45.15	16.61	28.99	38.55	28.12	29.14	15.66
Merged-chr5-124001077-3	chr5	124000988	124001188	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145070, exon 27 of 32)	exon (NM_145070, exon 27 of 32)	4236.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	21.8	28.67	22.82	18.5	15.14	28.22	19.6	15.67	18.29	25.11	13.06	8.14
Merged-chr7-45924175-3	chr7	45924109	45924309	+	995.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2783.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	20.19	15.09	15.97	8.45	27.82	22.26	15.61	16.82	42.68	41.67	55.27	23.49
Merged-chr11-54879590-3	chr11	54879481	54879681	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13198.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	16.56	19.12	24.53	18.1	16.77	18.81	8.97	18.06	24.39	27.11	24.62	18.8
Merged-chr13-91636197-3	chr13	91636109	91636309	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	T-rich|Low_complexity|Low_complexity	-105312.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	13.33	25.66	20.54	26.95	23.32	18.19	18.27	21.76	22.03	16.57	35.17	21.3
Merged-chr2-6450890-3	chr2	6450813	6451013	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98177.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	20.19	22.89	24.53	12.47	27.41	32.61	41.52	37.23	34.81	21.59	42.71	18.48
Merged-chr10-34128044-3	chr10	34127935	34128135	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-63.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	23.02	29.43	23.96	12.07	17.18	37.32	14.62	13.57	33.24	18.08	24.12	11.9
Merged-chr17-35188432-3	chr17	35188305	35188505	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	35.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	24.23	17.86	17.11	13.27	19.23	34.18	22.92	20.47	26.36	22.59	19.6	19.42
Merged-chr12-70136582-3	chr12	70136492	70136692	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17579.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	23.02	16.35	30.8	27.35	28.23	21.01	14.95	31.57	21.83	26.11	18.59	12.53
Merged-chr9-110857020-3	chr9	110856912	110857112	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	-955.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	17.77	11.57	22.25	24.94	18.41	25.4	17.61	24.67	27.93	19.58	25.12	23.81
Merged-chr12-100779610-3	chr12	100779509	100779709	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 1 of 12)	intron (NM_145448, intron 1 of 12)	552.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	25.04	9.31	20.54	18.1	16.77	18.19	13.62	12.79	29.9	21.09	10.55	18.8
Merged-chr1-91053889-3	chr1	91053805	91054005	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	461.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	14.13	10.31	17.11	17.7	11.45	13.17	12.95	9.79	16.13	12.05	21.1	12.22
Merged-chr14-63436497-3	chr14	63436402	63436602	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177628, exon 1 of 4)	5' UTR (NM_177628, exon 1 of 4)	108.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	37.96	20.12	21.11	16.89	32.32	38.57	21.59	25.04	33.04	40.67	20.6	12.53
Merged-chr1-191718111-5	chr1	191718024	191718224	+	995.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172266)	promoter-TSS (NM_172266)	100.0	NM_172266	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	12.52	15.09	13.12	6.84	8.59	13.8	6.98	12.98	15.74	8.54	16.58	10.02
Merged-chr8-122548012-3	chr8	122547979	122548179	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	3250.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	9.69	12.07	3.42	6.84	15.96	13.8	14.62	12.79	20.65	16.57	13.06	13.16
Merged-chr4-145214616-3	chr4	145214515	145214715	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-19610.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	31.9	13.83	29.09	21.72	25.36	26.03	19.27	20.64	45.83	24.1	63.31	25.37
Merged-chr1-6406585-3	chr1	6406482	6406682	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47251.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	29.07	25.66	34.8	35.39	27.0	29.48	11.96	31.85	25.96	17.57	34.67	10.96
Merged-chr5-43854312-3	chr5	43854201	43854401	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14508.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	23.82	20.63	18.83	30.16	27.41	20.38	31.56	33.95	20.85	16.57	32.66	11.28
Merged-chr12-32230786-3	chr12	32230688	32230888	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22139.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	31.9	15.59	15.4	21.32	34.36	38.57	13.95	21.5	28.72	28.62	37.18	9.08
Merged-chr15-74968380-3	chr15	74968276	74968476	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13270.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	32.3	30.94	17.68	12.47	27.41	30.73	14.95	26.16	49.17	35.15	45.73	25.37
Merged-chr13-9765042-3	chr13	9764910	9765110	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-54.0	NM_001347473	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	14.54	17.36	11.98	15.28	26.59	30.42	15.94	16.21	27.54	27.62	42.21	16.29
Merged-chr2-156356244-2	chr2	156356152	156356352	+	995.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 9 of 12)	intron (NM_027585, intron 9 of 12)	36727.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	14.13	26.41	29.66	17.7	0.82	0.0	0.0	0.62	38.16	34.65	29.65	23.18
Merged-chr8-124830205-2	chr8	124830104	124830304	+	995.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198632, exon 10 of 10)	3' UTR (NM_198632, exon 10 of 10)	32825.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	14.54	30.18	39.36	4.02	25.77	47.66	21.92	20.38	4.72	5.52	2.51	4.7
Merged-chr2-102154968-2	chr2	102154876	102155076	+	995.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	31484.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	1.62	1.51	5.7	0.0	23.32	29.79	29.23	23.38	15.14	9.04	17.59	14.41
Merged-chr7-80075070-3	chr7	80075104	80075304	+	995.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	53.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	21.4	15.59	27.38	18.9	9.0	23.52	8.3	9.17	17.11	26.61	14.57	15.66
Merged-chr17-10370709-5	chr17	10370592	10370792	+	995.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46090.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	14.54	5.03	18.83	24.53	11.05	11.92	16.28	10.79	7.28	11.55	10.05	8.46
Merged-chr11-3182604-2	chr11	3182528	3182728	+	995.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	MTD|LTR|ERVL-MaLR	10835.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	16.56	13.58	14.26	21.32	23.32	5.64	25.58	11.05	0.0	0.0	0.0	0.0
Merged-chr5-136217316-4	chr5	136217218	136217418	+	995.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302938)	TTS (NM_001302938)	-18364.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	15.34	14.34	15.4	16.89	38.86	28.22	32.88	18.48	37.76	31.13	26.63	30.07
Merged-chr10-122794562-3	chr10	122794433	122794633	+	995.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	115218.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	12.92	14.59	15.4	12.47	15.55	11.92	13.95	11.1	20.65	14.06	26.63	10.34
Merged-chr7-67370429-3	chr7	67370329	67370529	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	2429.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	19.79	24.4	4.56	3.22	25.77	52.99	20.26	13.46	36.58	25.11	22.61	14.1
Merged-chr14-79515661-3	chr14	79515563	79515763	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	-11.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	15.75	19.87	19.4	14.08	25.36	27.91	10.3	17.24	28.32	23.1	32.66	20.05
Merged-chr17-50111252-3	chr17	50111142	50111342	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79255.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	12.92	7.55	16.54	22.12	41.32	42.33	30.56	47.64	21.64	21.09	38.19	12.84
Merged-chr4-134005780-3	chr4	134005687	134005887	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4923.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	31.5	26.41	25.67	29.76	15.96	12.23	16.28	22.32	27.14	24.1	27.64	20.68
Merged-chr14-75147887-3	chr14	75147784	75147984	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	11459.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	43.61	23.9	37.65	14.88	47.87	56.76	20.93	15.53	57.24	41.67	30.15	23.81
Merged-chr11-22814554-3	chr11	22814440	22814640	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45195.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	21.0	15.85	2.28	12.07	14.32	20.07	12.95	10.79	27.34	27.11	12.06	6.58
Merged-chr1-171713582-3	chr1	171713439	171713639	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31547.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	41.19	16.1	11.98	26.14	37.64	18.19	21.92	22.74	22.82	16.07	20.6	13.78
Merged-chr7-75686742-3	chr7	75686650	75686850	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-161588.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	30.28	20.37	22.82	27.35	15.55	15.05	17.94	25.23	29.7	25.61	19.09	12.53
Merged-chr18-11822510-3	chr18	11822400	11822600	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 3 of 3)	intron (NR_045421, intron 3 of 3)	-16774.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	27.86	13.08	25.1	26.55	18.82	17.87	17.27	22.99	31.47	18.08	36.18	14.1
Merged-chr13-26234920-3	chr13	26234816	26235016	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77490.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	9.69	12.32	5.13	18.1	24.14	17.25	15.61	29.75	16.72	14.56	30.65	12.22
Merged-chr2-31763448-3	chr2	31763354	31763554	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	3281.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	31.5	15.34	30.23	22.52	23.32	28.85	23.25	28.43	21.83	24.1	26.13	9.71
Merged-chr16-43108013-2	chr16	43107916	43108116	+	995.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-139268.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	10.5	2.26	7.99	8.45	18.41	15.05	20.93	29.24	20.85	21.59	22.11	15.35
Merged-chr2-167923746-2	chr2	167923664	167923864	+	995.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.65	3.27	14.26	6.84	18.82	13.17	14.28	10.07	18.49	10.04	26.13	20.05
Merged-chr2-128429934-3	chr2	128429838	128430038	+	995.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	-587.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	25.84	20.12	19.4	14.88	14.32	20.07	6.31	11.07	27.34	34.14	26.63	16.6
Merged-chr6-134120427-3	chr6	134120320	134120520	+	995.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	84720.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	21.4	10.56	15.97	4.83	10.23	21.95	12.62	9.45	33.63	41.67	26.63	4.39
Merged-chr14-70880251-3	chr14	70880130	70880330	+	995.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9877.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	26.65	17.86	25.67	14.88	16.36	11.92	13.95	14.52	16.52	14.56	28.14	13.78
Merged-chr2-126164799-3	chr2	126164690	126164890	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026981, exon 5 of 5)	exon (NM_026981, exon 5 of 5)	12649.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	18.57	15.09	21.68	37.4	20.46	9.41	15.28	30.31	32.26	21.59	31.66	15.35
Merged-chr16-17815551-3	chr16	17815446	17815646	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-17573.0	NR_027959	433004.0	Mm.310200	NM_001002790		B830017H08Rik	-	RIKEN cDNA B830017H08 gene	ncRNA	33.92	20.12	39.93	19.31	16.77	34.18	16.94	23.44	24.39	24.1	19.6	10.96
Merged-chr7-29171208-3	chr7	29171122	29171322	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	1012.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	33.52	37.48	46.78	15.69	22.09	54.88	14.95	18.62	50.94	37.16	45.22	18.48
Merged-chr13-62129945-3	chr13	62129876	62130076	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	86.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	19.38	16.35	24.53	26.95	11.45	19.76	37.2	22.54	30.09	35.65	33.67	29.45
Merged-chr2-29661926-3	chr2	29661830	29662030	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	42210.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	23.02	17.36	34.8	26.55	29.05	12.23	10.96	28.12	24.98	30.13	39.19	21.62
Merged-chr5-124478978-3	chr5	124478850	124479050	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-715.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	18.98	14.09	14.83	13.27	14.73	29.79	13.62	9.59	18.88	21.09	17.08	17.54
Merged-chr6-8505071-3	chr6	8504961	8505161	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	4100.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	15.34	11.82	17.68	10.05	13.09	13.17	12.29	21.5	19.08	4.52	26.63	19.74
Merged-chr6-127151826-3	chr6	127151738	127151938	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-790.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	33.52	20.88	28.52	32.98	18.41	13.8	16.94	10.43	15.74	21.09	22.11	7.21
Merged-chr6-87207852-3	chr6	87207756	87207956	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	103110.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	40.78	16.6	26.81	30.57	22.5	22.89	8.64	26.16	33.04	22.59	54.27	17.86
Merged-chr14-78701243-1	chr14	78701143	78701343	+	995.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	31486.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.85	0.75	4.56	3.62	13.5	15.99	13.29	20.94	1.97	3.51	3.52	2.51
Merged-chr9-14244627-3	chr9	14244525	14244725	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31676.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	48.05	38.23	50.2	65.96	49.5	32.61	35.21	75.87	39.53	14.06	36.18	29.13
Merged-chr16-22657066-3	chr16	22656962	22657162	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_138650, exon 1 of 25)	5' UTR (NM_138650, exon 1 of 25)	169.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	52.9	25.4	50.2	43.04	33.55	37.63	35.87	36.14	24.0	18.58	43.72	26.0
Merged-chr9-72532196-6	chr9	72532164	72532364	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045735)	promoter-TSS (NR_045735)	24.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	11.31	10.56	17.11	5.63	22.5	20.38	17.94	12.36	27.93	20.08	30.15	8.14
Merged-chr16-24348160-3	chr16	24348036	24348236	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45214.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	27.86	15.59	72.45	53.09	34.36	27.28	51.49	51.59	20.85	14.56	50.75	26.0
Merged-chr2-168578235-2	chr2	168578147	168578347	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	12118.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	26.65	12.58	29.66	18.5	21.27	10.03	12.62	22.71	3.74	4.52	8.54	7.83
Merged-chr9-57523886-3	chr9	57523759	57523959	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2627.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	18.17	24.65	26.24	20.91	16.36	18.81	15.28	13.18	31.27	21.09	19.6	15.04
Merged-chr13-92923760-3	chr13	92923673	92923873	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78986.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	39.98	41.5	43.93	56.31	20.46	11.29	15.94	29.16	33.63	31.13	66.33	25.37
Merged-chr9-123986323-3	chr9	123986219	123986419	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7911.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	15.34	17.36	7.99	26.95	22.91	17.56	8.64	25.51	28.72	18.58	30.15	20.36
Merged-chr14-70860762-3	chr14	70860663	70860863	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7830.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	25.84	23.39	41.07	59.53	31.09	24.46	42.85	43.04	11.8	8.03	17.08	6.58
Merged-chr14-25850634-1	chr14	25850534	25850734	+	995.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	8479.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.81	3.27	2.85	9.65	4.09	5.64	9.97	9.9	6.1	3.51	12.06	9.71
Merged-chr7-114874281-1	chr7	114874181	114874381	+	995.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74369.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	8.08	6.54	11.41	6.44	3.27	3.76	7.64	8.72	5.51	7.53	18.09	3.76
Merged-chr8-108827630-3	chr8	108827550	108827750	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-109210.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	20.59	21.88	21.68	32.98	27.82	42.02	36.21	27.14	3.34	13.56	10.05	5.64
Merged-chr1-120253966-3	chr1	120253872	120254072	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	11308.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	18.57	14.09	31.38	14.48	17.18	28.54	20.26	42.87	26.95	22.59	42.21	24.43
Merged-chr10-22142709-3	chr10	22142588	22142788	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254744, intron 1 of 1)	B1_Mus1|SINE|Alu	6582.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	21.8	20.63	14.26	22.52	22.91	16.62	34.21	16.29	16.33	20.59	20.1	35.09
Merged-chr9-77911678-3	chr9	77911583	77911783	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5682.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	28.27	33.2	21.68	16.09	38.86	31.36	12.62	14.75	40.32	47.7	43.21	25.06
Merged-chr17-55722473-3	chr17	55722388	55722588	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-9852.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	18.98	9.81	35.37	35.39	22.91	26.34	31.89	26.55	27.93	31.63	57.28	19.42
Merged-chr2-11766704-3	chr2	11766601	11766801	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348235, intron 3 of 20)	intron (NM_001348235, intron 3 of 20)	10884.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	23.82	15.85	25.67	37.0	25.36	15.99	22.59	46.71	23.41	17.57	34.17	15.66
Merged-chr16-65406112-3	chr16	65406092	65406292	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114437.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	14.54	13.58	13.69	26.14	34.77	8.47	12.95	25.65	12.39	11.55	12.56	7.52
Merged-chr7-141477277-3	chr7	141477174	141477374	+	994.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 1 of 7)	MIRc|SINE|MIR	894.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	11.31	10.31	20.54	10.05	12.27	14.74	14.62	16.71	14.36	17.57	23.62	12.22
Merged-chr12-112760537-6	chr12	112760443	112760643	+	994.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178911)	promoter-TSS (NM_178911)	-112.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	17.77	21.13	7.42	23.33	10.64	11.6	8.97	9.39	19.47	20.59	17.08	16.92
Merged-chr17-71004453-2	chr17	71004339	71004539	+	994.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1906.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	6.06	5.03	7.99	4.83	22.91	29.16	19.6	7.37	52.91	59.25	58.79	38.22
Merged-chr5-101959652-3	chr5	101959564	101959764	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110257.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	22.61	12.07	45.07	34.19	28.23	31.67	35.54	41.75	36.39	41.67	81.9	41.35
Merged-chr9-35062283-3	chr9	35062180	35062380	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	RMER6B|LTR|ERVK	-54448.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	16.96	14.59	7.42	6.44	13.09	20.38	13.62	7.85	22.42	17.07	8.04	4.07
Merged-chr1-106817759-3	chr1	106817640	106817840	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21015.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	16.15	11.57	13.69	18.5	15.55	23.52	15.28	17.69	33.63	19.08	20.1	11.28
Merged-chr3-135825605-3	chr3	135825516	135825716	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	-41.0	NM_001135149	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	16.15	13.58	14.83	34.99	26.59	23.52	22.26	23.55	15.74	17.07	30.65	15.04
Merged-chr9-102834892-3	chr9	102834805	102835005	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013649)	promoter-TSS (NM_013649)	-15.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	22.21	20.12	38.79	29.36	32.32	29.16	19.6	31.26	28.13	21.59	38.19	11.59
Merged-chr1-161875899-3	chr1	161875798	161875998	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	784.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	15.75	18.11	19.4	19.31	25.77	23.83	18.6	24.28	28.52	31.13	27.13	15.04
Merged-chr15-73442589-3	chr15	73442494	73442694	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19403.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	40.38	25.66	25.67	43.44	29.86	23.2	20.26	40.54	31.86	18.08	31.15	17.86
Merged-chr10-21809719-3	chr10	21809561	21809761	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72523.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.04	14.09	18.25	8.85	27.0	33.55	27.24	29.33	48.19	28.12	55.27	22.56
Merged-chr11-48838609-3	chr11	48838448	48838648	+	994.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347446, intron 1 of 6)	intron (NM_001347446, intron 1 of 6)	1077.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	21.8	10.56	16.54	15.28	22.91	19.13	13.62	15.2	13.37	21.59	16.58	12.53
Merged-chr17-6142228-2	chr17	6142140	6142340	+	994.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	4092.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	22.21	13.33	20.54	8.04	13.5	22.58	17.94	3.84	3.93	5.52	3.52	3.45
Merged-chr11-97988180-3	chr11	97988081	97988281	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1735.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	21.0	19.62	14.26	25.34	24.55	29.48	16.28	14.97	33.44	36.65	23.11	17.23
Merged-chr6-57823225-3	chr6	57823138	57823338	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1887.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	16.15	23.14	39.93	20.11	15.96	19.44	11.29	13.57	38.94	27.62	29.14	18.48
Merged-chr17-45595500-3	chr17	45595364	45595564	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357771, intron 1 of 13)	CpG	108.0	NM_001199116	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	14.94	16.6	5.7	9.65	14.73	18.19	15.61	10.65	13.77	21.09	14.57	18.8
Merged-chr1-171410390-3	chr1	171410298	171410498	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-915.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	29.88	13.83	17.11	12.47	29.46	23.2	12.29	23.27	19.47	23.1	30.15	16.29
Merged-chr18-32348533-3	chr18	32348457	32348657	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-28660.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	12.11	14.84	13.12	22.12	18.0	23.52	23.92	28.23	21.24	15.57	25.12	21.93
Merged-chr19-47882699-3	chr19	47882596	47882796	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030051, intron 7 of 8)	intron (NM_030051, intron 7 of 8)	16902.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	27.86	32.45	13.69	19.71	27.0	24.77	13.29	25.91	38.55	35.15	65.83	17.23
Merged-chr9-123853055-3	chr9	123852943	123853143	+	994.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1144.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	16.15	23.9	10.27	14.08	4.5	15.68	22.59	8.07	27.93	18.58	21.1	23.49
Merged-chr14-25378303-5	chr14	25378234	25378434	+	994.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-80851.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	21.8	24.65	17.68	10.05	16.36	32.61	16.94	17.07	14.36	21.59	20.6	13.78
Merged-chr17-42912363-3	chr17	42912260	42912460	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35936.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	14.13	31.19	39.36	47.06	17.18	12.23	25.58	48.31	43.66	35.65	36.18	24.43
Merged-chr18-68058531-3	chr18	68058436	68058636	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	125363.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	37.96	25.66	7.99	9.65	33.14	64.6	26.24	12.28	34.81	26.61	19.6	8.46
Merged-chr1-51477845-3	chr1	51477734	51477934	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028696, exon 1 of 6)	exon (NM_028696, exon 1 of 6)	565.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	14.13	29.43	17.11	14.88	12.68	26.97	13.95	18.17	14.36	25.11	21.61	14.1
Merged-chr6-129623922-3	chr6	129623829	129624029	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286018)	promoter-TSS (NM_001286018)	-65.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	21.8	33.7	31.95	15.69	22.09	37.32	26.91	41.66	25.57	16.07	24.12	19.11
Merged-chr16-49904538-3	chr16	49904448	49904648	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	Lx8|LINE|L1	48894.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	14.94	9.31	26.24	34.59	47.87	31.98	61.78	73.49	29.7	30.63	49.24	22.56
Merged-chr2-91196115-3	chr2	91196040	91196240	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1024.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	13.73	13.33	14.83	10.86	22.91	52.05	19.93	27.76	35.4	20.59	37.18	16.29
Merged-chr3-31109303-3	chr3	31109194	31109394	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	14236.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	24.63	28.93	13.12	22.93	26.59	53.31	29.23	33.53	41.11	43.68	40.7	31.01
Merged-chr12-80334346-3	chr12	80334264	80334464	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57313.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	12.52	10.31	23.39	20.91	19.23	13.48	11.29	16.18	8.26	25.11	21.1	16.29
Merged-chr17-83351812-3	chr17	83351703	83351903	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	872.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	25.04	14.09	29.66	19.71	16.77	26.65	18.6	26.78	18.88	13.05	36.18	23.18
Merged-chr5-113594608-3	chr5	113594497	113594697	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44177.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	15.75	10.82	13.12	2.41	33.55	41.08	37.54	20.13	59.6	53.73	48.74	16.29
Merged-chr9-96637363-3	chr9	96637275	96637475	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5872.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	29.48	19.62	27.95	22.12	13.91	15.99	32.88	30.45	24.19	17.07	27.64	15.35
Merged-chr4-131838323-3	chr4	131838220	131838420	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	-42.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	35.13	32.45	21.68	28.15	39.27	41.39	12.95	31.65	51.93	42.68	52.76	38.22
Merged-chr2-59161649-4	chr2	59161523	59161723	+	994.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001178)	promoter-TSS (NM_001001178)	773.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	14.94	9.31	21.68	8.85	16.36	12.86	28.57	19.43	18.49	11.05	29.65	13.16
Merged-chr7-111373594-3	chr7	111373498	111373698	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250923.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	44.82	49.55	55.33	39.01	15.14	35.43	33.88	29.47	79.27	81.34	99.99	57.95
Merged-chr4-123990840-3	chr4	123990719	123990919	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	73386.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	14.13	16.6	11.98	18.9	26.18	30.73	32.55	48.28	28.13	18.08	36.18	34.77
Merged-chr7-127025343-3	chr7	127025252	127025452	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010772, exon 2 of 5)	exon (NM_010772, exon 2 of 5)	1127.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	20.19	15.09	23.39	14.88	22.91	33.55	20.26	22.21	21.05	16.07	28.64	21.62
Merged-chr19-6402205-3	chr19	6402124	6402324	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 2 of 16)	intron (NM_011242, intron 2 of 16)	1641.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	11.71	11.57	21.68	20.51	25.36	20.07	13.95	21.98	25.57	27.11	39.19	20.99
Merged-chr3-89835659-3	chr3	89835566	89835766	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	4296.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	15.75	21.63	42.21	37.4	22.91	26.65	21.92	30.87	29.11	24.1	41.71	22.24
Merged-chr1-52799611-3	chr1	52799595	52799795	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17993.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	11.31	12.58	10.84	17.29	12.27	14.42	6.64	6.5	20.65	19.08	14.57	10.65
Merged-chr3-132171763-3	chr3	132171657	132171857	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	MER121|DNA|TcMar?	86465.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	21.4	11.32	39.93	37.4	69.14	60.83	69.09	76.49	59.01	65.78	62.31	35.4
Merged-chr12-108635709-3	chr12	108635604	108635804	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163396)	promoter-TSS (NM_001163396)	-49.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	19.38	12.58	29.09	18.1	22.09	21.32	25.24	31.26	25.37	17.07	32.16	33.83
Merged-chr13-58487460-3	chr13	58487361	58487561	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84118.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	13.33	17.36	27.38	14.08	32.32	22.89	24.58	40.74	15.34	23.6	32.66	21.62
Merged-chr8-56286875-1	chr8	56286775	56286975	+	994.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7677.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.63	4.02	3.42	8.04	11.86	2.82	17.94	28.77	4.52	4.52	17.08	3.13
Merged-chr2-46251748-3	chr2	46251652	46251852	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur1|LINE|L1	555147.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	14.94	14.84	18.83	13.67	20.05	15.68	17.27	14.83	19.67	20.59	25.63	16.92
Merged-chr2-79742158-3	chr2	79742057	79742257	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	34377.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	21.8	19.12	22.82	39.82	39.27	15.05	24.91	41.27	32.06	32.64	47.74	30.07
Merged-chr3-127398501-1	chr3	127398401	127398601	+	994.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	10557.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.5	0.0	0.8	0.0	0.0	0.66	0.0	17.7	37.16	23.62	18.17
Merged-chr9-48407725-1	chr9	48407625	48407825	+	994.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	45684.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.0	0.5	1.14	0.0	0.82	0.0	0.0	0.0	16.52	22.09	18.59	11.28
Merged-chr5-118560201-3	chr5	118560097	118560297	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172424)	promoter-TSS (NM_172424)	-522.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	34.73	20.63	8.56	14.48	33.55	22.58	15.94	18.9	41.5	30.63	48.24	18.8
Merged-chr15-50826333-3	chr15	50826239	50826439	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	62710.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	21.4	12.32	23.96	28.96	27.82	23.2	14.62	35.66	25.57	17.57	25.12	11.28
Merged-chr4-56114083-2	chr4	56113981	56114181	+	994.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-581606.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.27	5.03	11.98	23.73	25.36	16.62	23.58	26.13	7.87	15.57	26.13	13.47
Merged-chrX-11999219-3	chrX	11999101	11999301	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	81352.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	24.23	13.58	10.27	16.09	27.82	15.68	21.26	22.77	23.01	21.09	26.13	13.78
Merged-chr6-13872337-3	chr6	13872225	13872425	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	756.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	29.07	17.86	19.4	22.93	18.82	26.34	15.94	25.01	30.68	24.1	35.17	10.96
Merged-chr19-29521211-3	chr19	29521103	29521303	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015567, intron 1 of 3)	intron (NR_015567, intron 1 of 3)	784.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	24.23	15.09	27.95	14.08	16.77	26.34	13.95	35.64	31.47	33.14	20.1	19.11
Merged-chr13-45390751-3	chr13	45390591	45390791	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 1 of 6)	intron (NM_153789, intron 1 of 6)	949.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	27.46	25.91	16.54	18.5	15.96	50.8	11.29	13.37	30.09	32.13	31.66	7.52
Merged-chr11-102881051-3	chr11	102880979	102881179	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-104.0	NM_001109995	20624.0	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	30.28	25.4	14.83	14.48	15.96	44.21	12.95	13.6	31.86	32.64	26.63	20.68
Merged-chr18-3891062-3	chr18	3890952	3891152	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-274780.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	14.94	17.36	14.83	18.5	26.18	13.8	14.28	20.33	32.06	33.64	42.21	15.98
Merged-chr1-131017337-3	chr1	131017258	131017458	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2487.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	13.33	11.32	6.85	0.8	15.14	23.52	14.62	8.16	21.83	24.1	22.11	10.34
Merged-chr8-70695417-3	chr8	70695323	70695523	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2316.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	21.8	23.64	21.11	15.69	22.09	22.89	17.94	17.47	26.55	17.07	22.61	22.87
Merged-chr17-87972211-3	chr17	87972098	87972298	+	994.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-2852.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	34.32	34.71	26.24	25.74	28.64	28.54	20.59	2.16	35.4	24.1	17.59	19.74
Merged-chr11-116842900-3	chr11	116842707	116842907	+	994.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028865)	promoter-TSS (NM_028865)	642.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	10.9	11.07	7.99	15.28	16.77	9.72	14.95	12.84	17.31	12.55	14.57	12.22
Merged-chr14-77825293-2	chr14	77825207	77825407	+	994.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025384)	TTS (NM_025384)	-26339.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	4.04	1.51	9.13	6.03	36.0	17.56	24.25	22.63	16.13	36.65	18.09	10.96
Merged-chr14-76505973-2	chr14	76505883	76506083	+	994.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1473.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	21.0	11.57	18.25	10.86	24.96	23.2	17.27	19.54	5.9	1.51	6.53	5.33
Merged-chr3-107134650-2	chr3	107134560	107134760	+	994.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	33093.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.04	7.55	11.98	4.42	33.55	23.2	12.29	10.96	31.08	31.13	40.7	13.78
Merged-chr11-53931232-3	chr11	53931123	53931323	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	32.3	41.5	31.95	14.88	28.64	65.22	16.61	16.65	46.81	29.12	28.14	7.83
Merged-chr1-40404802-3	chr1	40404671	40404871	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24799.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	20.59	13.33	10.84	19.31	25.77	25.71	37.54	52.88	30.29	27.62	38.19	9.4
Merged-chr14-64652481-3	chr14	64652418	64652618	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-13.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	18.57	30.69	19.97	18.9	41.73	33.55	11.29	30.17	38.16	34.65	51.25	34.15
Merged-chr8-121792366-3	chr8	121792264	121792464	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37205.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	14.94	11.07	23.39	14.08	22.5	26.97	31.56	43.68	116.05	102.93	139.69	83.02
Merged-chr16-35802336-3	chr16	35802225	35802425	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	31939.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	16.56	25.15	35.37	30.16	23.32	37.0	51.82	53.33	61.56	33.64	84.42	41.04
Merged-chr6-108400004-3	chr6	108399923	108400123	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 31 of 61)	intron (NM_010585, intron 31 of 61)	-89720.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	31.9	21.38	33.09	31.77	19.23	16.93	23.25	36.28	21.83	13.05	32.66	22.24
Merged-chr6-146686118-3	chr6	146686013	146686213	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28895.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	21.0	31.69	31.38	27.35	43.36	74.32	33.22	37.09	15.54	22.09	15.58	12.22
Merged-chr16-22009793-3	chr16	22009682	22009882	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357424, intron 1 of 15)	CpG	298.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	14.54	17.61	16.54	27.35	17.59	21.32	8.3	20.89	31.27	36.15	22.61	29.13
Merged-chr9-94669868-3	chr9	94669779	94669979	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177909)	promoter-TSS (NM_177909)	-13.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	17.36	11.82	29.09	20.11	24.55	14.42	28.57	28.29	16.92	16.57	29.14	13.16
Merged-chr15-76745259-3	chr15	76745166	76745366	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-21421.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	17.36	13.33	29.66	15.28	22.5	23.52	17.61	22.57	18.29	18.58	18.59	15.66
Merged-chr7-141409064-3	chr7	141408955	141409155	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172116, intron 7 of 7)	intron (NM_172116, intron 7 of 7)	5070.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	26.25	22.89	17.11	13.67	21.27	26.34	12.62	26.44	24.19	32.64	46.23	14.1
Merged-chr1-165738072-3	chr1	165737981	165738181	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25677.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	19.38	11.82	15.4	35.8	25.77	28.54	16.94	24.45	22.82	19.58	24.62	20.05
Merged-chr4-101693010-3	chr4	101692911	101693111	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24396.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.46	6.04	20.54	30.97	52.37	12.54	27.9	38.47	23.21	33.64	34.67	19.11
Merged-chr4-35224235-3	chr4	35224148	35224348	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	1632.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	64.2	54.33	56.48	15.28	49.09	85.61	33.55	31.71	108.77	95.9	55.78	33.52
Merged-chr1-137751754-3	chr1	137751597	137751797	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214758.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	20.19	26.91	27.38	21.72	41.32	24.15	69.76	56.02	39.73	33.14	46.73	23.18
Merged-chr10-67693770-3	chr10	67693675	67693875	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121816.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	28.67	26.16	47.35	29.76	53.59	30.73	37.54	44.58	26.75	15.57	24.12	23.81
Merged-chr17-56762229-3	chr17	56762155	56762355	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2496.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	15.34	22.89	21.11	23.73	24.96	31.04	11.29	16.12	26.36	22.59	38.19	20.36
Merged-chr19-44067453-3	chr19	44067354	44067554	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145502, intron 2 of 10)	intron (NM_145502, intron 2 of 10)	2232.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	21.0	17.61	27.95	32.58	29.86	16.62	6.31	14.69	19.28	17.57	28.14	13.47
Merged-chr11-78094667-3	chr11	78094561	78094761	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346762)	promoter-TSS (NM_001346762)	-6.0	NM_001346762	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	18.17	20.63	13.69	18.5	28.64	24.77	15.61	15.56	19.87	21.09	31.66	11.9
Merged-chr2-3752512-3	chr2	3752425	3752625	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	39067.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	14.54	9.06	14.83	36.2	18.82	15.99	17.27	21.67	29.31	18.08	34.67	13.78
Merged-chr14-70392783-5	chr14	70392652	70392852	+	994.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021308, intron 16 of 22)	intron (NM_021308, intron 16 of 22)	36342.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	13.73	14.34	8.56	16.89	33.55	18.81	17.27	14.02	17.11	30.13	18.59	9.4
Merged-chr16-24773933-3	chr16	24773828	24774028	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	AT_rich|Low_complexity|Low_complexity	52073.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	24.63	14.59	32.52	20.91	24.14	16.62	25.24	23.58	22.23	15.06	24.62	17.86
Merged-chr4-137724964-3	chr4	137724855	137725055	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081155, intron 19 of 24)	intron (NM_001081155, intron 19 of 24)	494.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	26.25	19.12	13.69	14.88	19.64	34.49	16.28	23.36	61.37	14.06	46.23	30.7
Merged-chr5-102046175-3	chr5	102046073	102046273	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23748.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	15.34	7.04	23.39	18.1	20.86	17.25	23.25	22.29	26.36	13.56	27.64	29.13
Merged-chr7-141468724-3	chr7	141468628	141468828	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-61.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	31.9	20.12	25.1	16.09	22.91	28.85	15.28	25.91	35.01	39.16	39.7	13.47
Merged-chr15-63498686-3	chr15	63498568	63498768	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19060.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	26.25	12.83	35.94	42.23	28.64	22.58	58.46	58.35	27.73	19.58	29.65	23.49
Merged-chr2-72351534-3	chr2	72351445	72351645	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	65844.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	20.19	10.06	16.54	13.67	31.91	33.55	16.61	26.33	35.21	28.62	38.69	23.49
Merged-chr15-85657830-3	chr15	85657716	85657916	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45957.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	15.75	24.4	40.5	30.97	24.96	23.52	22.26	21.81	24.0	18.08	21.61	19.11
Merged-chr1-152682769-3	chr1	152682733	152682933	+	994.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-57616.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	22.21	18.61	7.99	10.46	18.0	21.32	9.63	15.25	19.47	18.58	17.59	11.59
Merged-chr8-41019640-5	chr8	41019587	41019787	+	994.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015457, intron 2 of 2)	intron (NR_015457, intron 2 of 2)	2219.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	11.31	9.06	10.27	19.31	11.05	11.29	7.97	16.77	26.16	16.57	39.19	23.49
Merged-chr15-77933950-3	chr15	77933844	77934044	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4950.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	18.17	16.35	14.26	26.95	24.96	41.39	19.93	28.23	20.65	42.18	29.65	17.86
Merged-chr17-87313519-3	chr17	87313399	87313599	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	30613.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	19.38	19.62	22.82	24.53	33.14	25.4	41.85	55.49	27.34	13.05	20.1	20.68
Merged-chr5-115236015-3	chr5	115235905	115236105	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026398, intron 1 of 5)	intron (NM_026398, intron 1 of 5)	154.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	16.96	14.09	25.67	18.9	15.14	23.2	13.29	11.97	16.72	24.6	23.62	11.28
Merged-chr4-132760494-3	chr4	132760397	132760597	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3326.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	22.21	19.62	25.1	14.88	42.14	41.39	23.92	36.11	26.55	29.62	33.67	14.1
Merged-chr11-117803468-3	chr11	117803378	117803578	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029964, intron 3 of 5)	intron (NM_029964, intron 3 of 5)	5818.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	29.88	15.34	27.95	22.12	27.0	17.56	9.63	19.68	36.58	26.61	39.7	29.45
Merged-chr2-4969293-3	chr2	4969176	4969376	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-6846.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	23.42	17.86	23.39	17.7	28.23	23.2	22.59	36.42	25.96	16.57	42.71	24.43
Merged-chr7-141525468-3	chr7	141525361	141525561	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026522, intron 7 of 10)	intron (NM_026522, intron 7 of 10)	14396.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	29.88	27.42	16.54	24.13	24.96	26.03	17.61	35.8	48.58	24.6	50.25	28.19
Merged-chr19-56397196-3	chr19	56397112	56397312	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	83.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	25.44	16.85	30.8	20.51	24.14	10.66	21.26	14.19	27.54	13.05	30.15	18.8
Merged-chr4-129497264-3	chr4	129497187	129497387	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6097.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	35.53	28.93	18.25	17.7	40.09	43.59	20.59	13.88	38.16	43.18	42.21	21.93
Merged-chr13-74639115-3	chr13	74639023	74639223	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030711)	promoter-TSS (NM_030711)	-730.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	15.75	13.08	22.25	23.73	17.18	28.54	13.29	32.83	24.0	20.59	19.6	7.52
Merged-chr3-38128673-3	chr3	38128558	38128758	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79461.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	11.31	15.34	27.95	14.48	22.09	25.09	29.9	36.62	21.24	18.08	28.64	13.78
Merged-chr6-146634411-3	chr6	146634329	146634529	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026281, exon 1 of 12)	exon (NM_026281, exon 1 of 12)	163.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	30.69	25.91	12.55	18.1	33.96	39.51	16.61	24.34	24.98	37.66	39.19	14.41
Merged-chr6-141066011-3	chr6	141065921	141066121	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-183248.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	17.36	27.67	70.74	34.19	48.68	47.35	44.18	66.36	52.12	36.65	93.96	48.87
Merged-chr1-138248264-3	chr1	138248180	138248380	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25458.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	14.54	11.07	15.97	17.7	36.41	19.76	16.28	21.42	25.18	18.58	27.64	15.35
Merged-chr13-95639805-2	chr13	95639706	95639906	+	994.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 30 of 35)	(TTTTG)n|Simple_repeat|Simple_repeat	-21340.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	38.36	25.66	29.09	26.14	6.55	9.72	1.33	4.12	20.65	20.08	18.59	20.05
Merged-chr17-67339825-3	chr17	67339715	67339915	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	14644.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	13.73	12.83	6.28	14.48	15.55	20.7	13.29	22.88	27.34	21.59	26.13	13.47
Merged-chr17-35208431-3	chr17	35208318	35208518	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3067.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	12.11	13.58	19.4	24.94	11.86	15.05	14.62	17.97	28.52	29.62	29.65	37.28
Merged-chr13-105300865-3	chr13	105300762	105300962	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6377.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	24.63	23.9	18.83	32.58	20.05	30.1	13.29	26.66	34.22	16.57	24.12	15.04
Merged-chr5-122643913-3	chr5	122643807	122644007	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	-4.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	28.27	19.87	38.22	39.42	40.09	41.71	22.92	33.25	23.6	18.08	23.11	15.04
Merged-chr9-32940566-3	chr9	32940451	32940651	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11585.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	5.25	17.1	11.41	27.35	22.5	22.26	34.55	22.07	12.78	10.04	15.07	15.66
Merged-chr2-48816583-3	chr2	48816470	48816670	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	2461.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	25.04	22.13	35.37	19.71	11.86	13.8	11.96	25.49	31.67	17.07	42.71	16.6
Merged-chr1-131060502-3	chr1	131060399	131060599	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	37344.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	18.17	13.58	32.52	15.69	33.55	32.93	22.59	24.53	15.54	22.09	20.6	12.53
Merged-chr13-55327849-3	chr13	55327764	55327964	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	1866.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	21.0	35.97	28.52	18.1	43.36	36.37	7.64	24.9	33.63	24.6	41.2	17.86
Merged-chr4-141998801-3	chr4	141998699	141998899	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12852.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	15.75	13.33	27.95	12.47	12.27	16.31	16.61	21.0	12.59	17.57	27.64	15.98
Merged-chr11-54113058-3	chr11	54112957	54113157	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136076, intron 5 of 15)	intron (NM_001136076, intron 5 of 15)	12133.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	23.42	18.61	19.4	33.78	22.91	39.51	22.26	39.5	17.11	16.57	25.63	10.96
Merged-chr11-59472498-3	chr11	59472394	59472594	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-20.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	35.53	17.61	27.38	14.08	24.14	31.67	26.91	21.84	52.71	33.64	30.15	19.11
Merged-chr9-61029429-3	chr9	61029334	61029534	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12365.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	14.13	5.79	19.4	22.12	11.45	29.16	20.93	20.36	32.45	33.64	55.27	14.1
Merged-chr11-117825936-3	chr11	117825851	117826051	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	32.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	28.27	21.88	13.12	24.53	22.5	23.83	25.24	20.5	38.94	28.62	37.18	25.37
Merged-chr6-50188183-3	chr6	50188093	50188293	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 11 of 13)	intron (NM_001361248, intron 11 of 13)	73576.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	17.36	22.64	26.81	23.33	24.96	13.48	17.27	36.39	27.73	23.6	18.59	19.42
Merged-chr5-91278700-3	chr5	91278604	91278804	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	4372.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	33.11	24.65	25.67	57.51	32.73	26.34	31.22	61.12	10.82	16.57	29.65	15.04
Merged-chr1-143917780-3	chr1	143917682	143917882	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86367.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	25.04	17.86	37.08	20.91	22.91	25.4	19.93	32.83	20.85	18.58	17.59	12.22
Merged-chr6-72899529-10	chr6	72899487	72899687	+	994.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	-295.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	20.59	20.63	13.12	10.86	14.73	26.97	29.23	12.84	21.24	22.59	14.57	10.65
Merged-chr4-130797207-5	chr4	130797112	130797312	+	994.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	4675.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	13.33	7.8	10.27	17.7	21.27	25.4	17.61	30.08	37.17	20.08	22.61	15.98
Merged-chr10-119055840-3	chr10	119055721	119055921	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5322.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	42.4	20.12	26.81	22.52	26.59	31.04	15.61	24.17	47.4	52.22	51.76	33.83
Merged-chr15-74673507-3	chr15	74673413	74673613	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-943.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	11.71	11.82	23.39	21.72	36.0	20.07	21.92	25.99	24.0	23.6	33.16	22.56
Merged-chr3-96098767-3	chr3	96098660	96098860	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5767.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	17.77	15.34	21.11	10.46	38.05	42.33	16.94	28.49	46.22	33.64	56.78	35.71
Merged-chr3-147071151-3	chr3	147071054	147071254	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	218787.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	42.8	37.23	15.97	18.5	49.91	58.32	29.9	39.48	52.12	48.7	50.75	25.69
Merged-chr16-36675503-3	chr16	36675410	36675610	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9433.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	19.38	20.88	21.68	29.36	16.77	24.46	8.97	30.25	32.45	30.13	36.68	23.18
Merged-chr1-61001877-3	chr1	61001802	61002002	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23988.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	15.75	12.58	15.97	22.12	23.32	32.93	20.26	20.92	15.93	13.05	16.58	15.04
Merged-chr14-26612694-3	chr14	26612577	26612777	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285467, intron 12 of 19)	intron (NM_001285467, intron 12 of 19)	-25457.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	18.57	27.67	30.8	25.34	22.5	30.1	16.28	16.79	28.13	31.63	20.6	18.17
Merged-chr2-145699846-3	chr2	145699745	145699945	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1350.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	22.61	26.16	18.83	27.75	28.64	31.36	9.63	41.75	32.06	31.13	42.21	19.74
Merged-chr17-17860290-3	chr17	17860201	17860401	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5113.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	18.98	12.83	11.98	16.49	22.5	14.11	9.63	14.78	22.62	35.65	29.65	18.17
Merged-chr9-106212102-3	chr9	106212013	106212213	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011876, intron 3 of 8)	intron (NM_011876, intron 3 of 8)	9005.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	26.65	24.15	17.11	25.74	9.82	53.93	22.59	20.72	33.63	28.62	29.65	12.84
Merged-chr1-87038782-2	chr1	87038696	87038896	+	994.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	51132.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	12.92	15.09	22.82	16.89	9.82	13.48	14.95	25.43	8.06	5.52	7.03	3.45
Merged-chr7-55870521-2	chr7	55870423	55870623	+	994.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	B2_Mm2|SINE|B2	28452.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.81	1.01	0.0	0.0	10.64	19.13	14.28	9.62	29.7	19.08	34.17	15.98
Merged-chr10-75765330-3	chr10	75765229	75765429	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-972.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	30.69	13.33	30.8	20.91	19.64	29.16	14.62	29.58	31.67	31.63	30.15	17.54
Merged-chr13-41268028-3	chr13	41267932	41268132	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	18188.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	21.4	15.59	31.38	32.58	24.55	22.89	28.23	42.25	18.88	15.57	24.62	28.51
Merged-chr9-111047469-3	chr9	111047360	111047560	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9784.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	27.05	13.08	41.64	21.32	13.09	18.5	11.29	14.55	24.19	16.07	34.67	12.22
Merged-chr19-8735780-3	chr19	8735678	8735878	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134139)	promoter-TSS (NM_134139)	-61.0	NM_134139	107071.0	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	15.34	16.35	21.68	12.87	26.18	25.4	12.62	18.03	26.75	34.65	19.09	30.39
Merged-chr1-127135926-3	chr1	127135830	127136030	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69056.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	12.11	14.09	41.07	25.34	33.55	19.44	34.88	34.01	24.98	22.59	34.17	24.43
Merged-chr9-13245725-3	chr9	13245617	13245817	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033181)	promoter-TSS (NM_001033181)	24.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	8.88	13.33	15.4	14.48	22.09	18.81	11.29	16.23	19.28	25.11	22.61	22.87
Merged-chr9-42094891-3	chr9	42094796	42094996	+	994.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011436, intron 3 of 47)	intron (NM_011436, intron 3 of 47)	-17683.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	23.42	16.1	25.1	30.16	24.14	26.03	18.6	18.31	45.83	67.28	47.74	10.65
Merged-chr13-43122798-3	chr13	43122680	43122880	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005748)	promoter-TSS (NM_001005748)	-59.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	22.61	15.34	31.38	16.09	38.46	31.98	35.21	51.93	17.31	26.61	28.14	11.28
Merged-chr1-39408838-3	chr1	39408763	39408963	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	41012.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	26.25	19.37	25.1	24.13	19.23	12.54	15.28	39.7	28.13	21.59	33.67	17.23
Merged-chr4-46451953-3	chr4	46451849	46452049	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	CpG	1023.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	26.65	18.11	13.69	17.7	18.82	14.42	27.24	25.57	24.59	42.18	35.17	20.68
Merged-chr7-81789449-3	chr7	81789324	81789524	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026077)	promoter-TSS (NM_026077)	29.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	18.98	10.56	28.52	18.5	30.68	18.5	15.94	33.14	17.51	14.06	20.1	21.62
Merged-chr17-26113368-3	chr17	26113302	26113502	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021793)	promoter-TSS (NM_021793)	86.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	23.42	22.89	24.53	20.91	28.64	29.79	20.59	14.52	27.14	17.07	18.09	11.28
Merged-chr10-10744343-3	chr10	10744258	10744458	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114333, intron 5 of 9)	intron (NM_001114333, intron 5 of 9)	-6688.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	35.94	17.36	22.25	21.72	29.86	12.23	16.94	27.62	26.95	25.61	26.63	12.22
Merged-chr6-71223511-3	chr6	71223407	71223607	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160127, intron 6 of 9)	MLT1B|LTR|ERVL-MaLR	23628.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	14.94	21.38	21.68	19.31	31.09	45.78	32.22	42.62	41.11	28.12	39.7	30.39
Merged-chr9-21547184-3	chr9	21547072	21547272	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021531, exon 1 of 16)	exon (NM_021531, exon 1 of 16)	278.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	25.44	22.39	18.83	25.74	19.64	23.83	16.28	17.94	22.62	29.62	21.61	20.05
Merged-chr11-95712838-3	chr11	95712758	95712958	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-104.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	12.52	10.06	9.13	19.71	30.68	17.87	16.61	10.54	41.5	34.14	33.67	26.31
Merged-chr7-45361592-3	chr7	45361493	45361693	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029741, exon 2 of 30)	exon (NM_029741, exon 2 of 30)	-4568.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	21.0	21.13	14.26	19.31	20.86	24.77	9.63	20.72	16.33	18.58	28.64	26.94
Merged-chr18-24205869-3	chr18	24205768	24205968	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-91.0	NM_001361200	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	27.05	17.36	22.25	13.67	41.73	32.3	21.59	33.62	39.14	27.11	54.77	19.74
Merged-chr17-50079034-3	chr17	50078945	50079145	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	111452.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	13.33	15.85	22.82	32.18	20.86	22.58	12.95	33.31	25.77	36.65	31.15	16.29
Merged-chr13-37506280-3	chr13	37506191	37506391	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	160946.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	40.38	57.85	27.95	19.71	40.09	96.27	40.19	26.72	30.49	22.09	17.08	11.59
Merged-chr5-64237812-3	chr5	64237631	64237831	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	Lx9|LINE|L1	7374.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.86	9.31	9.7	10.05	12.68	2.2	6.64	8.89	10.62	8.54	12.06	4.39
Merged-chr13-49100602-3	chr13	49100493	49100693	+	994.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	47735.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	23.02	15.85	34.8	32.58	33.96	8.78	30.23	39.76	30.49	15.57	33.67	22.56
Merged-chr12-38787894-3	chr12	38787791	38787991	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	4180.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	16.96	22.39	14.26	32.18	25.77	26.97	17.94	37.82	21.24	18.08	23.11	15.35
Merged-chr7-126702543-3	chr7	126702449	126702649	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301374, intron 2 of 10)	intron (NM_001301374, intron 2 of 10)	1671.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	12.92	21.13	21.68	24.13	25.77	13.8	9.3	19.79	41.3	18.08	39.19	25.37
Merged-chr16-90312502-3	chr16	90312400	90312600	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-27997.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	25.44	23.14	10.84	25.34	17.18	29.16	11.29	18.03	24.59	36.65	34.67	25.69
Merged-chr1-53845482-3	chr1	53845358	53845558	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-3966.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	23.82	12.32	39.93	20.51	23.32	19.44	23.58	26.38	12.98	20.08	23.11	15.04
Merged-chr5-120775481-3	chr5	120775385	120775585	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	2174.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	21.8	20.37	20.54	22.93	22.09	20.07	11.29	25.74	13.18	27.11	21.1	11.59
Merged-chr10-85184466-3	chr10	85184373	85184573	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007771, exon 1 of 13)	5' UTR (NM_007771, exon 1 of 13)	581.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	14.54	23.14	15.4	11.66	18.41	21.32	16.94	18.76	22.23	23.1	33.67	18.17
Merged-chr12-35215000-1	chr12	35214900	35215100	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20103.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.23	0.0	6.85	4.42	10.23	3.76	5.65	10.09	6.49	3.01	7.54	2.51
Merged-chr11-106752330-3	chr11	106752226	106752426	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033435, intron 2 of 6)	intron (NM_001033435, intron 2 of 6)	1100.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	22.61	14.09	35.94	26.55	24.14	25.4	26.57	37.21	29.7	19.08	25.12	12.84
Merged-chr14-21280650-2	chr14	21280543	21280743	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	204491.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.44	2.52	6.85	22.52	19.64	19.44	19.27	38.83	13.57	8.03	23.62	6.27
Merged-chr2-45693857-1	chr2	45693757	45693957	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2748.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.23	5.79	0.0	8.85	13.5	13.8	13.62	18.53	7.47	2.01	10.05	4.39
Merged-chr1-84562850-3	chr1	84562738	84562938	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 4 of 12)	A-rich|Low_complexity|Low_complexity	-133001.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	13.73	13.08	13.12	17.7	20.05	23.83	14.28	12.14	26.16	36.15	32.16	20.36
Merged-chr4-9243681-3	chr4	9243594	9243794	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-25599.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	20.59	17.36	26.24	47.06	26.18	21.95	26.91	59.61	23.21	11.55	37.69	25.06
Merged-chr18-82954141-6	chr18	82954059	82954259	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-33599.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	11.71	13.58	7.99	4.02	9.0	8.15	12.29	6.73	8.06	15.57	8.04	14.1
Merged-chr13-23701365-3	chr13	23701280	23701480	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010424)	TTS (NM_010424)	-2922.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	27.05	20.37	19.4	14.48	23.73	33.55	20.26	21.39	21.83	17.07	29.65	12.84
Merged-chr7-122329281-1	chr7	122329181	122329381	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40156.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.5	0.0	0.0	4.91	4.08	7.31	9.31	9.24	6.53	7.03	8.14
Merged-chr8-126826614-3	chr8	126826501	126826701	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22419.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	15.75	11.57	16.54	14.88	20.86	31.67	14.28	26.69	19.47	24.6	21.1	14.1
Merged-chr10-120978736-5	chr10	120978627	120978827	+	993.9500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	603.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	10.09	10.06	9.7	4.83	9.82	22.58	10.3	11.41	21.64	22.09	15.07	11.59
Merged-chr2-152104895-3	chr2	152104802	152105002	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-622.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	16.15	11.82	17.68	10.46	22.09	22.89	16.28	22.82	29.5	35.15	30.15	22.87
Merged-chr8-79374599-3	chr8	79374499	79374699	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	24869.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	21.0	12.32	25.67	12.47	11.86	12.86	19.6	29.19	19.47	9.54	33.16	19.74
Merged-chr9-113743407-3	chr9	113743309	113743509	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1936.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	17.77	16.35	32.52	23.73	15.55	18.19	17.61	35.05	16.92	12.05	28.64	22.24
Merged-chr11-68657097-3	chr11	68657010	68657210	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34805.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	29.07	11.32	31.95	31.77	37.64	31.98	29.56	38.52	37.57	28.12	49.24	34.46
Merged-chr3-21808751-3	chr3	21808633	21808833	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-267919.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	35.53	19.87	18.83	27.35	32.32	46.72	35.21	38.22	27.54	30.63	33.67	12.53
Merged-chr4-41353487-3	chr4	41353376	41353576	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1513.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	16.15	32.7	21.68	13.27	30.27	28.22	17.61	21.73	47.8	49.71	36.68	26.63
Merged-chr3-60627774-3	chr3	60627674	60627874	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253710, exon 8 of 8)	3' UTR (NM_001253710, exon 8 of 8)	126595.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	24.63	12.58	19.4	24.53	24.14	22.58	22.26	29.69	20.85	16.07	26.13	16.92
Merged-chr2-163928642-3	chr2	163928568	163928768	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9985.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	47.24	26.16	58.76	41.02	47.87	45.47	54.81	61.51	13.77	13.56	20.1	15.04
Merged-chrX-7422983-3	chrX	7422845	7423045	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027924)	promoter-TSS (NR_027924)	43.0	NR_027924	68355.0	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	16.15	18.11	18.83	16.09	21.68	32.61	12.95	24.11	29.31	25.11	32.66	22.24
Merged-chr5-103655500-3	chr5	103655419	103655619	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028824, exon 1 of 4)	5' UTR (NM_028824, exon 1 of 4)	205.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	16.96	18.36	13.69	20.91	17.59	19.44	15.94	18.17	14.36	25.11	21.61	16.29
Merged-chr3-9902548-3	chr3	9902447	9902647	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68868.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	16.15	5.53	7.99	23.33	22.91	12.54	15.94	20.64	26.95	17.57	25.12	14.1
Merged-chr5-65697908-3	chr5	65697783	65697983	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-27.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	23.42	20.37	22.82	22.93	16.77	37.94	15.28	16.01	31.47	26.11	28.64	16.29
Merged-chr1-165731693-3	chr1	165731582	165731782	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23588.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	13.73	14.59	43.93	19.31	21.68	21.95	32.22	42.06	27.73	22.09	40.2	18.48
Merged-chr19-56600956-3	chr19	56600858	56601058	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52697.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	30.28	23.14	23.96	32.58	38.05	26.97	33.55	39.53	31.67	19.08	44.22	13.78
Merged-chr13-81691818-3	chr13	81691718	81691918	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081176, intron 3 of 7)	intron (NM_001081176, intron 3 of 7)	19195.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	21.8	11.32	17.68	41.02	29.86	25.71	52.82	54.56	18.69	25.11	31.66	21.93
Merged-chr10-122690889-3	chr10	122690796	122690996	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	11581.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	7.67	16.85	18.83	17.29	23.73	26.03	7.64	18.14	19.08	24.1	20.1	13.78
Merged-chr12-55642562-3	chr12	55642475	55642675	+	993.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	43658.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	25.84	16.85	22.25	14.88	14.32	20.7	14.28	22.63	26.36	16.57	25.63	10.65
Merged-chr9-46099288-3	chr9	46099161	46099361	+	993.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86441.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	27.86	20.63	19.4	19.31	18.0	19.44	12.29	16.01	22.03	17.07	18.09	19.42
Merged-chr11-113684524-2	chr11	113684417	113684617	+	993.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	83.0	NM_001361593	276852.0	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	14.54	8.3	2.28	6.84	14.32	13.17	12.95	10.43	17.31	21.59	15.58	15.66
Merged-chr10-9717179-3	chr10	9717077	9717277	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32455.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	18.57	17.86	18.25	17.7	23.32	42.65	35.21	28.63	24.59	26.61	43.21	9.4
Merged-chr11-5100054-3	chr11	5099942	5100142	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	-123.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	18.17	25.66	15.4	21.72	29.05	25.71	13.62	18.17	21.24	33.14	29.14	17.23
Merged-chr3-88659970-1	chr3	88659870	88660070	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-6828.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	10.9	18.86	23.96	19.31	0.0	2.82	1.33	2.16	0.98	1.51	2.01	0.63
Merged-chr18-63694028-3	chr18	63693883	63694083	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44E|LTR|ERVK	-1624.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	25.04	21.13	13.12	16.89	35.59	52.05	44.18	21.62	28.52	29.62	16.08	24.75
Merged-chr3-81149349-3	chr3	81149243	81149443	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	112927.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	21.8	17.36	27.95	39.01	33.96	13.48	21.26	31.35	18.88	24.6	22.61	19.42
Merged-chr8-125560995-3	chr8	125560894	125561094	+	993.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	8869.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	34.32	17.61	26.24	18.5	30.27	27.91	28.9	27.59	16.92	15.06	12.06	11.9
Merged-chr10-31600288-2	chr10	31600186	31600386	+	993.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	9439.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	24.23	15.09	22.82	12.07	19.64	8.47	23.58	33.7	13.96	3.01	7.54	5.64
Merged-chrX-74085096-3	chrX	74084991	74085191	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010788, intron 1 of 3)	CpG	599.0	NM_010788	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	11.31	27.67	18.25	10.46	21.68	26.03	19.6	20.58	18.88	21.09	22.61	28.19
Merged-chr8-126695630-3	chr8	126695529	126695729	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102193.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	19.79	19.87	14.26	8.04	27.0	33.55	20.59	13.74	32.26	30.13	29.65	15.66
Merged-chr14-63131888-3	chr14	63131778	63131978	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	9416.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	11.71	26.66	23.96	21.72	32.73	37.94	22.59	34.29	46.81	45.19	37.69	18.17
Merged-chr1-62750581-3	chr1	62750481	62750681	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	44151.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	16.15	20.63	12.55	4.83	24.96	30.73	9.3	6.7	30.09	24.6	31.15	5.33
Merged-chr2-181237122-3	chr2	181237023	181237223	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183162, intron 6 of 18)	AT_rich|Low_complexity|Low_complexity	4904.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	18.17	19.37	43.35	22.93	17.18	27.59	31.56	31.4	29.5	43.68	37.18	27.25
Merged-chr8-105965597-3	chr8	105965479	105965679	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045594, intron 1 of 23)	intron (NR_045594, intron 1 of 23)	536.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	19.79	16.1	14.26	12.07	22.09	22.89	24.25	18.93	19.28	20.08	19.09	11.59
Merged-chr8-70864886-3	chr8	70864861	70865061	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7953.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	11.71	14.34	5.7	8.45	19.64	15.05	15.61	12.93	16.92	16.07	10.05	7.83
Merged-chr13-67609689-3	chr13	67609606	67609806	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163246)	promoter-TSS (NM_001163246)	1.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	29.07	28.93	17.11	26.14	39.27	32.93	13.95	22.82	144.76	120.51	143.21	79.26
Merged-chr17-37525643-3	chr17	37525541	37525741	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4316.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	52.9	46.28	83.86	86.47	20.46	12.86	12.29	15.62	53.7	41.67	54.27	37.28
Merged-chr8-71273262-3	chr8	71273157	71273357	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163042)	promoter-TSS (NM_001163042)	543.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	22.61	18.11	12.55	9.25	22.5	27.28	36.54	34.07	34.22	28.62	24.12	23.81
Merged-chr7-133123296-4	chr7	133123191	133123391	+	993.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009980, exon 1 of 11)	5' UTR (NM_009980, exon 1 of 11)	192.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	23.42	12.58	10.27	14.88	16.36	13.8	11.96	11.47	16.72	22.09	21.1	18.48
Merged-chr17-84089811-3	chr17	84089699	84089899	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045458)	TTS (NR_045458)	11139.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	19.38	10.56	16.54	38.21	22.09	20.07	16.28	27.06	28.13	21.59	27.13	24.12
Merged-chr13-14064779-3	chr13	14064558	14064758	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194262, intron 1 of 23)	CpG	874.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	7.27	10.31	11.41	5.23	11.86	7.21	6.64	5.61	15.14	19.08	13.57	17.23
Merged-chr5-121400345-3	chr5	121400255	121400455	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	2373.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	17.77	23.64	23.39	34.99	35.59	22.26	11.29	22.91	35.99	32.64	37.69	18.48
Merged-chr8-105708232-3	chr8	105708156	105708356	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198299)	promoter-TSS (NM_198299)	-33.0	NM_001357256	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	13.73	16.6	10.84	12.87	14.73	17.56	11.63	13.21	24.78	33.14	31.66	13.47
Merged-chr2-144301058-3	chr2	144300970	144301170	+	993.714294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	30166.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	16.15	14.34	19.4	14.48	25.36	20.07	26.91	26.02	15.14	23.6	30.15	19.11
Merged-chr15-8446606-3	chr15	8446519	8446719	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2156.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	25.04	28.67	11.41	26.55	30.68	34.49	29.23	31.71	48.98	51.72	38.19	23.18
Merged-chr7-45150495-3	chr7	45150399	45150599	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3804.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	13.73	14.34	36.51	15.69	27.0	25.71	17.94	29.52	24.78	29.12	28.14	18.48
Merged-chr9-110532993-3	chr9	110532889	110533089	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081340, intron 1 of 20)	CpG	392.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	18.57	11.57	11.41	15.69	15.14	20.07	14.62	15.14	27.14	19.58	29.14	23.18
Merged-chr16-32814608-3	chr16	32814499	32814699	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4153.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	27.46	18.86	37.08	19.71	18.41	36.06	9.63	13.6	23.8	18.58	22.61	15.66
Merged-chr5-105654821-3	chr5	105654710	105654910	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45159.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	14.54	19.87	15.4	19.31	21.68	26.03	15.94	18.56	17.7	26.11	34.67	14.1
Merged-chr14-47188875-3	chr14	47188752	47188952	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	561.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	16.96	24.4	9.7	10.86	23.73	37.32	19.27	16.65	32.26	41.67	27.64	21.93
Merged-chr19-10203911-3	chr19	10203820	10204020	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026919)	promoter-TSS (NM_026919)	23.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	35.94	34.46	23.96	11.66	18.82	51.11	15.28	17.19	61.37	52.22	32.16	30.07
Merged-chr6-29526123-3	chr6	29526020	29526220	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-505.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	9.29	8.3	19.4	16.49	9.0	11.29	31.89	24.76	13.37	17.07	28.14	12.84
Merged-chr13-110598573-3	chr13	110598434	110598634	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	203490.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	13.73	18.86	17.68	13.67	14.32	21.95	18.93	19.68	18.69	24.6	16.58	16.29
Merged-chr19-56756618-1	chr19	56756518	56756718	+	993.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34246.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.85	1.76	4.56	1.61	11.45	18.19	22.59	27.42	7.28	7.03	10.05	4.07
Merged-chr7-4237682-3	chr7	4237605	4237805	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-49.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	14.13	11.07	17.68	17.29	20.05	21.64	26.24	23.36	25.37	22.59	30.65	19.11
Merged-chr14-46742560-1	chr14	46742460	46742660	+	993.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-17981.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	6.46	6.54	6.28	3.62	6.95	14.42	9.97	11.02	5.51	2.01	10.55	2.19
Merged-chr2-148532222-2	chr2	148532122	148532322	+	993.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88687.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.65	3.02	18.83	5.23	20.46	11.6	11.96	17.44	16.92	15.57	25.12	7.52
Merged-chr7-112285754-2	chr7	112285655	112285855	+	993.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	59919.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	15.75	9.81	25.1	30.97	26.59	17.25	18.27	29.22	7.87	7.03	11.56	0.94
Merged-chr12-91305989-2	chr12	91305906	91306106	+	993.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	78403.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	4.85	1.51	6.85	4.02	36.82	33.24	25.91	33.81	28.72	32.64	25.12	10.96
Merged-chr1-65230739-2	chr1	65230635	65230835	+	993.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	44050.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	6.86	4.78	14.83	3.62	4.09	4.7	8.97	24.95	16.72	7.03	17.08	13.78
Merged-chr13-53219690-3	chr13	53219607	53219807	+	993.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	66402.0	NM_013846	26564.0	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	21.8	6.29	23.96	17.7	17.18	12.54	16.94	27.36	17.11	16.07	52.26	20.68
Merged-chr14-44104311-3	chr14	44104217	44104417	+	993.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001012766)	TTS (NM_001012766)	1430.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	69.86	72.69	88.42	129.91	76.91	93.44	95.0	51.79	63.33	73.31	96.48	40.72
Merged-chr17-26237949-3	chr17	26237848	26238048	+	993.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	6294.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	25.84	10.06	24.53	16.49	30.68	21.32	23.58	32.58	27.54	23.6	23.11	13.47
Merged-chr18-60481210-2	chr18	60481125	60481325	+	993.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	20758.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	17.36	11.07	19.97	12.47	13.5	21.95	14.62	29.86	5.11	4.52	4.52	0.94
Merged-chr3-84815458-6	chr3	84815345	84815545	+	993.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177773)	promoter-TSS (NM_001177773)	-132.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	9.29	13.83	18.83	15.69	18.0	7.84	13.95	13.37	17.9	23.6	19.6	21.3
Merged-chr4-9770790-3	chr4	9770701	9770901	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	216.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	32.71	30.43	30.23	50.27	9.0	11.29	17.61	13.68	15.54	26.11	23.62	22.56
Merged-chr5-120518329-3	chr5	120518229	120518429	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	7137.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	16.96	19.62	6.85	10.05	27.82	21.32	21.26	15.98	22.42	13.05	17.59	16.29
Merged-chr1-92676414-3	chr1	92676328	92676528	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27587.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	14.54	9.56	5.13	16.89	9.41	13.17	11.29	16.71	13.18	9.54	19.6	6.58
Merged-chr7-120870239-3	chr7	120870126	120870326	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	19037.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	27.05	29.18	15.97	22.12	19.64	12.86	10.63	23.19	12.78	21.09	15.58	10.65
Merged-chr18-60750736-3	chr18	60750642	60750842	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2077.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	12.52	13.83	18.25	20.11	22.91	17.56	23.25	33.93	16.72	16.57	31.66	11.59
Merged-chr11-97684822-3	chr11	97684713	97684913	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1139.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	29.07	20.12	23.39	15.28	26.59	41.08	15.28	31.23	37.57	38.66	35.17	17.86
Merged-chr4-3768831-3	chr4	3768724	3768924	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	MTA_Mm|LTR|ERVL-MaLR	53860.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	61.38	49.55	59.33	53.49	58.91	69.3	48.5	24.14	90.28	80.34	111.55	49.81
Merged-chr11-117072334-3	chr11	117072228	117072428	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4455.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	21.4	16.6	5.13	14.88	22.91	19.13	8.64	15.79	30.49	19.08	16.08	18.48
Merged-chr12-113222237-3	chr12	113222153	113222353	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36350.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	20.59	19.87	22.25	21.72	34.36	40.76	12.95	33.64	17.31	30.63	21.61	28.19
Merged-chr16-21630766-3	chr16	21630667	21630867	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	63898.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	21.8	20.63	34.23	25.34	24.96	29.79	22.59	30.28	30.09	15.57	22.11	20.99
Merged-chr8-84192178-3	chr8	84192076	84192276	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13215.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	58.15	34.21	19.4	22.52	52.77	52.37	18.27	34.26	46.62	60.75	43.21	29.45
Merged-chr10-87025082-3	chr10	87024984	87025184	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17142.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	18.57	13.33	17.11	20.11	17.18	24.46	18.6	15.36	26.75	12.55	38.69	17.86
Merged-chr5-96921725-3	chr5	96921627	96921827	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131152, intron 1 of 2)	intron (NR_131152, intron 1 of 2)	455.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	12.11	17.36	27.95	22.52	17.18	17.87	20.26	20.07	26.75	27.62	32.66	17.23
Merged-chr5-105062620-3	chr5	105062517	105062717	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9056.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	19.79	26.16	26.81	38.61	30.27	19.44	17.94	10.4	44.84	25.61	40.2	16.92
Merged-chr1-134406315-2	chr1	134406233	134406433	+	993.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028057, exon 2 of 9)	exon (NM_028057, exon 2 of 9)	552.0	NR_149307	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	14.94	7.29	6.85	10.86	15.55	11.92	7.97	12.5	17.7	12.55	23.11	10.96
Merged-chr3-61404382-2	chr3	61404315	61404515	+	993.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39908.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.81	1.51	1.71	3.62	12.27	15.05	7.64	9.31	19.87	18.58	21.1	10.65
Merged-chr8-13648584-3	chr8	13648462	13648662	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29025.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	12.92	16.35	16.54	15.28	32.73	15.68	22.92	37.04	18.29	22.59	21.61	22.87
Merged-chr4-152165621-3	chr4	152165525	152165725	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6758.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	16.15	26.16	19.4	39.01	22.91	20.07	28.9	22.49	26.16	27.11	27.64	26.0
Merged-chr2-130129877-2	chr2	130129756	130129956	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289747, intron 2 of 13)	ORR1D2|LTR|ERVL-MaLR	6581.0	NM_177726	241636.0	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	12.52	25.4	54.19	34.59	2.45	3.14	0.66	3.59	17.7	14.06	34.67	20.68
Merged-chr2-168556294-3	chr2	168556211	168556411	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	34054.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	15.34	29.43	29.66	33.78	14.73	18.19	27.9	29.16	18.49	15.06	30.15	10.02
Merged-chr10-93689054-3	chr10	93688948	93689148	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5726.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	25.84	25.15	17.68	16.09	38.86	30.1	24.91	25.21	26.95	14.06	26.13	12.53
Merged-chr16-33529913-3	chr16	33529809	33530009	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	11314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	31.5	18.86	49.63	57.11	38.05	37.0	98.99	118.01	19.08	15.06	32.66	26.31
Merged-chr12-52687537-2	chr12	52687435	52687635	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11848.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	17.36	15.09	12.55	18.5	13.91	16.93	10.3	18.36	4.92	10.04	7.03	4.07
Merged-chr2-133511651-3	chr2	133511543	133511743	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40516.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	18.98	17.61	27.38	32.58	30.27	19.76	18.27	20.66	34.81	18.08	36.18	17.86
Merged-chr17-6967819-3	chr17	6967715	6967915	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6659.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	75.91	60.12	70.17	63.15	43.77	53.93	63.11	49.99	18.69	16.07	25.63	14.1
Merged-chr11-121091181-3	chr11	121091054	121091254	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10015.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	14.94	26.16	30.8	27.75	17.18	29.79	6.98	12.81	21.24	33.14	16.08	18.17
Merged-chr10-122615821-3	chr10	122615739	122615939	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-32500.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	18.17	11.82	15.4	23.73	18.0	36.69	15.28	25.01	40.71	45.69	41.71	27.57
Merged-chr4-32268100-3	chr4	32267998	32268198	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149337.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	17.77	12.32	18.25	22.93	19.23	26.34	20.93	47.55	30.68	25.11	42.71	19.11
Merged-chr11-96311664-3	chr11	96311563	96311763	+	993.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4753.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	15.75	20.63	19.97	16.89	22.09	27.91	6.64	10.18	24.59	31.13	24.12	11.28
Merged-chr8-79398653-3	chr8	79398569	79398769	+	993.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	CpG	799.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	15.34	14.84	21.11	22.52	18.0	12.23	32.55	27.5	21.83	18.08	29.65	15.04
Merged-chr3-96708522-3	chr3	96708437	96708637	+	993.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030094)	promoter-TSS (NM_030094)	23.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	10.9	20.12	15.97	26.55	19.23	20.07	16.28	18.0	26.75	26.61	40.7	19.11
Merged-chr2-14244844-3	chr2	14244741	14244941	+	993.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	15427.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	20.19	11.32	21.11	13.67	36.0	20.38	35.54	33.0	21.24	20.08	21.1	15.98
Merged-chr11-3135043-2	chr11	3134948	3135148	+	993.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 27 of 32)	intron (NM_030207, intron 27 of 32)	11027.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	11.71	14.84	17.68	14.08	29.05	12.23	19.27	18.81	0.0	0.5	0.0	0.31
Merged-chr9-89253594-2	chr9	89253483	89253683	+	993.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	42199.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	10.09	6.04	5.7	5.63	13.91	12.23	22.26	23.3	19.87	7.03	15.07	11.28
Merged-chr8-122112444-1	chr8	122112344	122112544	+	993.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	134420.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	6.46	5.03	2.28	8.85	6.55	12.23	15.94	14.94	0.98	0.0	6.03	0.31
Merged-chr3-68981026-3	chr3	68980939	68981139	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026641, intron 5 of 19)	RSINE1|SINE|B4	23531.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	18.98	26.16	19.97	36.6	33.14	41.39	18.93	46.43	26.95	16.07	59.8	18.8
Merged-chr6-120145635-3	chr6	120145527	120145727	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-48196.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	15.75	16.6	13.69	17.29	44.59	48.29	38.86	56.38	29.31	39.16	44.22	24.75
Merged-chr14-70056363-3	chr14	70056299	70056499	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21046.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.27	6.54	11.41	12.47	11.45	21.64	10.63	17.1	16.92	19.08	18.59	9.4
Merged-chr8-83695521-3	chr8	83695435	83695635	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	-1474.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	18.57	10.31	15.97	11.66	25.77	20.07	20.26	20.66	21.05	25.11	20.6	21.93
Merged-chr7-34448551-3	chr7	34448442	34448642	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58837.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	18.98	23.14	27.38	27.35	56.87	34.49	29.56	51.31	41.11	18.08	28.64	18.8
Merged-chr11-53351735-3	chr11	53351611	53351811	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	944.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	21.0	18.86	18.25	14.88	28.23	22.26	22.92	21.34	19.47	16.07	22.11	24.43
Merged-chr4-105557694-3	chr4	105557608	105557808	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	400361.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.27	14.09	17.68	14.88	25.36	15.68	23.58	25.68	22.03	21.59	20.6	8.46
Merged-chr5-21768675-3	chr5	21768606	21768806	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009584, exon 8 of 17)	exon (NM_009584, exon 8 of 17)	16459.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	14.94	13.83	19.97	6.84	15.14	25.09	13.29	16.63	34.62	14.56	24.12	15.04
Merged-chr13-101740176-3	chr13	101740070	101740270	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	28047.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	12.92	7.55	18.83	18.9	13.09	17.25	9.97	9.64	13.77	16.57	14.07	13.47
Merged-chr2-153120306-3	chr2	153120215	153120415	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	11847.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	13.33	14.84	27.38	22.12	51.96	45.78	34.55	59.38	40.32	44.19	64.32	30.39
Merged-chr5-117375008-4	chr5	117374837	117375037	+	993.28125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 5 of 8)	intron (NM_021539, intron 5 of 8)	14086.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	5.65	9.56	12.55	6.84	9.82	10.35	17.61	15.17	8.06	9.04	14.07	9.4
Merged-chr9-90021630-3	chr9	90021520	90021720	+	993.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357743, intron 26 of 26)	intron (NM_001357743, intron 26 of 26)	-32647.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	25.84	11.82	31.95	22.93	34.36	26.34	12.62	34.4	38.75	28.12	36.18	18.17
Merged-chr7-100907488-3	chr7	100907389	100907589	+	993.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	24672.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	27.46	26.16	29.09	13.27	28.64	34.18	13.29	11.61	31.86	20.08	21.1	9.71
Merged-chr9-124020065-3	chr9	124019977	124020177	+	993.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-1894.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	21.8	15.34	45.64	27.35	32.73	22.89	33.88	34.99	16.92	18.58	27.13	22.87
Merged-chr9-78538203-3	chr9	78538114	78538314	+	993.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276452, exon 11 of 11)	exon (NM_001276452, exon 11 of 11)	49831.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	24.63	13.08	30.23	19.71	35.18	15.05	21.92	27.34	33.04	16.07	28.14	17.54
Merged-chr19-5366605-4	chr19	5366530	5366730	+	993.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	-183.0	NM_027236	69860.0	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	38.36	36.72	33.66	39.42	33.55	47.98	23.25	25.15	64.91	55.73	40.2	59.21
Merged-chr8-108721036-3	chr8	108720918	108721118	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	6374.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	18.17	9.56	21.68	33.78	15.96	9.41	13.29	23.66	23.21	18.08	21.61	20.68
Merged-chr13-34651543-3	chr13	34651456	34651656	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1125.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	25.04	18.61	33.09	31.37	26.59	13.8	27.57	30.95	14.16	13.56	31.15	20.99
Merged-chr6-125685632-3	chr6	125685527	125685727	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-4792.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	30.69	21.13	21.68	26.14	15.96	27.28	12.62	30.48	30.29	15.06	25.12	15.66
Merged-chr6-122811889-3	chr6	122811780	122811980	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8304.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	29.48	20.63	21.68	14.08	25.36	29.16	10.96	23.89	37.57	28.12	31.66	20.68
Merged-chr2-180255860-3	chr2	180255757	180255957	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-1522.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	21.4	21.88	18.83	14.08	17.18	23.2	12.29	23.33	21.05	18.08	29.14	15.98
Merged-chr9-68957267-3	chr9	68957178	68957378	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191932.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	33.11	30.43	33.09	29.36	22.91	27.59	16.28	18.45	13.57	14.56	26.63	12.53
Merged-chr15-68175882-3	chr15	68175786	68175986	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152182, intron 6 of 13)	intron (NR_152182, intron 6 of 13)	82970.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	29.07	30.94	53.05	43.44	41.32	34.49	41.52	53.58	42.88	17.57	47.23	32.58
Merged-chr2-119675572-4	chr2	119675456	119675656	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030112, intron 1 of 17)	CpG	488.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	13.73	14.84	13.69	12.87	18.41	19.76	9.97	9.64	25.18	18.08	24.12	7.21
Merged-chr6-39680802-3	chr6	39680697	39680897	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139294, intron 2 of 21)	Lx7|LINE|L1	44666.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	19.79	17.61	30.8	17.29	10.23	16.93	14.62	17.83	28.91	14.06	17.08	14.1
Merged-chr15-83442662-3	chr15	83442569	83442769	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	5211.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	20.59	28.42	21.68	30.97	22.09	25.09	19.27	36.84	23.8	15.57	30.15	12.53
Merged-chr11-119913816-3	chr11	119913772	119913972	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085498)	promoter-TSS (NM_001085498)	62.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	17.77	14.34	17.68	10.86	14.32	15.99	16.94	12.34	24.19	15.57	19.6	17.54
Merged-chr15-27672308-3	chr15	27672181	27672381	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9261.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	12.92	13.83	4.56	10.46	19.64	17.87	16.28	17.05	17.51	8.54	10.05	9.71
Merged-chr8-57800022-3	chr8	57799921	57800121	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-146966.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	27.86	18.86	31.38	30.57	11.86	11.92	19.6	38.3	32.26	44.69	30.65	20.99
Merged-chr18-20803226-3	chr18	20803114	20803314	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-56810.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	16.15	10.31	27.38	23.73	29.05	23.83	20.26	43.23	22.03	20.59	59.8	23.49
Merged-chr4-123635580-3	chr4	123635475	123635675	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	19155.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	19.79	17.1	19.4	19.31	24.55	18.5	16.94	23.78	25.57	16.57	19.6	21.93
Merged-chr9-70839242-3	chr9	70839131	70839331	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95577.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	13.33	16.6	19.97	14.08	23.73	24.77	16.61	18.31	24.78	18.08	25.63	16.6
Merged-chr5-115155996-3	chr5	115155888	115156088	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2188.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	19.38	16.6	23.39	18.5	27.41	25.71	10.3	21.76	23.21	19.58	29.65	18.48
Merged-chr7-100511819-3	chr7	100511718	100511918	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153527, exon 2 of 8)	exon (NM_153527, exon 2 of 8)	2997.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	14.54	11.07	15.97	22.12	20.86	18.5	9.97	16.96	47.4	59.25	88.44	40.1
Merged-chr10-80664602-3	chr10	80664521	80664721	+	993.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021462)	TTS (NM_021462)	-7550.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	20.19	49.55	37.65	18.1	27.41	46.72	15.61	17.55	28.13	43.18	17.08	7.21
Merged-chr6-148444349-3	chr6	148444244	148444444	+	993.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	8.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	20.59	8.8	17.68	27.35	13.91	12.86	17.61	24.95	14.36	14.06	27.13	15.98
Merged-chr3-95230814-3	chr3	95230710	95230910	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1867.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	20.59	14.09	10.27	17.7	25.36	24.15	26.91	21.53	22.42	28.62	41.2	10.34
Merged-chr2-154549776-3	chr2	154549667	154549867	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029305, exon 3 of 3)	exon (NM_029305, exon 3 of 3)	863.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	13.73	16.1	5.7	15.28	25.77	48.6	23.58	31.35	48.98	46.7	68.34	32.89
Merged-chr16-43398033-3	chr16	43397927	43398127	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	22169.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	21.8	13.33	33.09	23.73	29.46	19.44	31.56	48.95	24.78	14.06	31.66	14.72
Merged-chr7-25129003-3	chr7	25128900	25129100	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 1 of 13)	B1_Mus2|SINE|Alu	3460.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	23.42	15.09	19.4	12.47	9.41	25.4	14.62	20.86	21.44	21.59	29.65	14.1
Merged-chr8-95055134-2	chr8	95055036	95055236	+	993.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042715)	promoter-TSS (NM_001042715)	33.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	7.27	5.53	5.7	11.66	12.27	21.64	11.63	11.64	21.44	21.59	39.19	19.42
Merged-chr16-33966994-3	chr16	33966890	33967090	+	993.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	48.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	11.71	17.86	16.54	14.88	12.68	16.31	12.29	13.18	22.82	17.57	16.58	10.02
Merged-chr2-31769621-6	chr2	31769556	31769756	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	9483.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	16.56	14.34	14.26	8.85	9.82	10.98	6.31	11.47	19.67	13.56	20.1	22.24
Merged-chr11-88162251-3	chr11	88162145	88162345	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7320.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	18.17	15.59	15.4	18.1	15.96	21.64	8.97	14.55	18.88	6.53	19.6	10.65
Merged-chr1-92675995-3	chr1	92675911	92676111	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27170.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	26.25	17.36	14.83	22.93	22.91	27.28	20.26	25.77	15.93	25.61	29.65	19.11
Merged-chr3-32365707-3	chr3	32365539	32365739	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	26.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	16.96	12.32	13.69	7.24	29.05	14.42	10.3	14.36	24.59	14.06	18.09	7.52
Merged-chr16-11270815-3	chr16	11270699	11270899	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-16354.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	12.92	19.62	18.25	19.71	15.14	23.2	23.92	21.98	20.65	19.58	10.05	13.78
Merged-chr5-43770766-3	chr5	43770684	43770884	+	993.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159963, exon 3 of 11)	exon (NM_001159963, exon 3 of 11)	11365.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	16.15	15.85	24.53	27.35	23.32	9.41	39.86	44.1	23.41	17.57	15.07	11.28
Merged-chr4-123139788-5	chr4	123139680	123139880	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	161.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	11.31	16.6	13.12	20.11	9.41	25.4	7.97	7.09	18.29	11.05	14.07	11.28
Merged-chr11-3134494-2	chr11	3134381	3134581	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 29 of 33)	exon (NM_030207, exon 29 of 33)	10460.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	12.52	28.93	17.11	16.49	17.18	10.98	26.57	18.42	0.39	0.0	1.51	0.0
Merged-chr2-72196324-1	chr2	72196224	72196424	+	993.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-89313.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.5	1.71	1.61	0.82	0.0	0.66	0.0	5.51	19.08	16.08	5.33
Merged-chr10-80929234-3	chr10	80929170	80929370	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-821.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	21.4	30.94	18.83	22.12	20.46	13.48	14.95	10.6	26.16	16.57	17.08	20.68
Merged-chr1-182953867-3	chr1	182953750	182953950	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	-938.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	37.55	32.7	23.39	27.35	15.96	23.2	21.26	29.75	33.44	15.06	28.64	26.63
Merged-chr14-14600034-4	chr14	14599859	14600059	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103066.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	8.08	17.86	13.12	33.78	18.82	4.7	17.94	13.18	9.44	8.03	16.08	11.28
Merged-chr18-83817594-3	chr18	83817489	83817689	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	268973.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	23.42	16.85	15.4	14.88	28.23	31.36	38.2	24.73	45.63	32.13	35.17	19.42
Merged-chr15-64023939-3	chr15	64023932	64024132	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-25966.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	14.13	13.08	4.56	13.67	12.27	12.86	14.62	14.44	14.16	12.55	18.59	15.98
Merged-chr10-117982756-1	chr10	117982656	117982856	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57297.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.65	5.53	3.99	1.61	14.73	22.89	10.3	10.43	16.13	5.52	7.03	4.7
Merged-chr4-63205714-3	chr4	63205607	63205807	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9705.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	21.8	29.68	21.11	26.55	25.77	14.11	12.95	35.69	23.21	18.08	39.19	13.47
Merged-chr19-56390004-1	chr19	56389904	56390104	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286552)	promoter-TSS (NM_001286552)	34.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	4.44	4.78	1.14	4.02	6.14	4.08	10.63	7.18	4.72	2.01	6.53	3.45
Merged-chr4-32518525-1	chr4	32518425	32518625	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	L2a|LINE|L2	53137.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.81	1.51	7.99	5.63	0.0	1.88	7.31	10.32	1.38	1.51	1.0	0.63
Merged-chr9-78528106-3	chr9	78528015	78528215	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-46391.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	18.17	17.86	15.97	21.32	20.05	30.73	19.6	27.22	25.57	35.65	32.16	15.66
Merged-chr19-9082674-3	chr19	9082547	9082747	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011681)	TTS (NM_011681)	5309.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	18.98	14.59	14.26	22.93	15.96	25.09	13.29	17.94	19.28	16.07	30.15	12.84
Merged-chr17-81524874-1	chr17	81524774	81524974	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	URR1A|DNA|hAT-Charlie	213513.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.81	6.29	2.85	7.24	5.32	2.2	8.97	6.39	3.74	3.01	5.02	9.08
Merged-chr5-137046143-3	chr5	137046035	137046235	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007457)	promoter-TSS (NM_007457)	-27.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	21.8	21.63	15.97	26.14	26.59	33.87	16.94	15.22	32.06	38.16	44.22	24.43
Merged-chr8-95715878-3	chr8	95715805	95716005	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001035123)	promoter-TSS (NM_001035123)	-8.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	50.47	41.5	56.48	44.64	24.55	11.29	15.94	23.58	21.24	12.55	35.17	14.72
Merged-chr1-105993411-3	chr1	105993325	105993525	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	3019.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	21.4	15.09	36.51	18.1	29.05	31.67	12.95	33.64	28.52	16.07	34.17	32.27
Merged-chr13-97561159-3	chr13	97561069	97561269	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 1 of 2)	intron (NR_046157, intron 1 of 2)	1169.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	46.44	56.59	34.8	19.71	52.77	117.9	31.56	29.61	54.88	70.8	25.12	18.8
Merged-chr8-40961919-3	chr8	40961803	40962003	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	35670.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	17.77	22.64	18.25	20.91	24.96	17.87	16.61	23.78	19.47	16.57	25.63	13.47
Merged-chr1-62229324-3	chr1	62229168	62229368	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 13 of 22)	intron (NM_001081050, intron 13 of 22)	-93159.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	9.29	5.79	16.54	10.05	21.27	10.98	17.27	26.3	11.6	16.57	22.11	12.22
Merged-chr2-129330751-3	chr2	129330651	129330851	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20779.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	28.67	26.41	30.8	13.67	35.18	34.18	12.95	6.28	34.62	16.07	31.66	7.83
Merged-chr5-112991396-3	chr5	112991299	112991499	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	24139.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	41.19	25.91	46.21	41.02	31.5	23.2	21.59	43.21	24.19	10.54	16.58	11.59
Merged-chr9-95845260-3	chr9	95845159	95845359	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033210)	promoter-TSS (NM_001033210)	20.0	NM_001033210	102502.0	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	17.77	14.34	7.99	16.09	18.0	17.87	11.96	10.15	20.46	18.58	17.59	12.53
Merged-chrX-140492113-3	chrX	140492009	140492209	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35506.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	27.46	26.16	33.09	21.72	38.05	15.99	17.61	26.22	51.14	29.12	45.73	19.11
Merged-chr14-17660093-3	chr14	17659974	17660174	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-886.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	27.05	27.42	33.66	37.4	25.77	20.7	19.27	25.63	17.11	19.58	20.1	9.08
Merged-chr3-88149176-3	chr3	88149059	88149259	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6787.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	13.33	10.31	18.83	17.29	32.32	28.54	18.93	25.29	33.63	39.67	49.75	25.69
Merged-chr17-26677288-3	chr17	26677183	26677383	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025272, intron 1 of 3)	intron (NM_025272, intron 1 of 3)	887.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	17.36	11.82	39.93	19.31	30.68	28.22	19.6	25.43	39.93	37.66	18.59	20.05
Merged-chr3-81039496-3	chr3	81039394	81039594	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3078.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	14.94	12.07	17.11	19.71	29.46	19.44	11.96	25.6	21.83	17.57	23.11	11.59
Merged-chr10-67648386-3	chr10	67648313	67648513	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76454.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	17.36	10.82	19.97	22.52	21.27	13.17	13.29	21.62	28.13	19.58	30.65	16.29
Merged-chr5-34334512-3	chr5	34334429	34334629	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1721.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	9.29	14.09	19.4	7.24	20.46	18.19	10.63	20.94	25.96	31.63	30.65	25.37
Merged-chr2-157688678-3	chr2	157688541	157688741	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-48760.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	13.33	16.6	14.83	6.84	11.86	25.09	9.3	11.61	31.27	23.6	23.62	13.78
Merged-chr10-61121939-3	chr10	61121843	61122043	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25741.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	25.44	22.64	30.23	37.0	25.77	31.98	8.64	12.95	37.57	25.11	35.17	23.18
Merged-chr12-113119683-3	chr12	113119578	113119778	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20558.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	17.77	14.09	19.97	14.08	12.27	11.29	9.63	24.5	32.26	20.08	32.66	25.06
Merged-chr6-146271328-2	chr6	146271227	146271427	+	992.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	230896.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	10.5	13.83	18.25	13.27	28.64	29.48	16.61	29.58	5.31	10.54	8.54	4.07
Merged-chr11-117779087-3	chr11	117779006	117779206	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145439, intron 2 of 19)	intron (NM_145439, intron 2 of 19)	542.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	31.09	9.06	19.97	18.1	28.64	34.81	34.21	36.45	28.52	24.1	45.22	24.12
Merged-chr2-6469405-3	chr2	6469297	6469497	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116661.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	15.34	12.32	23.96	21.32	20.46	12.23	11.96	31.07	17.31	23.6	41.71	11.9
Merged-chr3-108563359-5	chr3	108563239	108563439	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	-873.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	17.36	13.08	22.25	19.71	12.27	7.84	3.99	8.27	12.98	9.54	16.58	8.46
Merged-chr17-87302543-3	chr17	87302423	87302623	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19637.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	15.34	11.82	12.55	4.42	17.59	13.48	16.94	14.05	21.05	33.14	19.09	11.28
Merged-chr3-96661072-3	chr3	96660980	96661180	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-9051.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	28.27	29.93	33.09	22.52	26.18	41.08	21.26	17.86	23.01	14.56	28.14	20.05
Merged-chr10-117435128-3	chr10	117435034	117435234	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12301.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	14.13	11.32	20.54	11.66	19.64	16.62	11.96	26.69	12.59	22.09	18.09	13.78
Merged-chr4-44973622-3	chr4	44973521	44973721	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7773.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	13.73	22.89	15.4	17.7	22.5	29.79	14.95	22.46	15.93	21.59	36.68	17.23
Merged-chr10-78481088-3	chr10	78480990	78481190	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16142.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	15.34	20.37	13.12	26.14	25.36	21.95	29.23	27.73	22.23	24.1	36.68	18.48
Merged-chr10-12923187-3	chr10	12923074	12923274	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038027)	promoter-TSS (NR_038027)	-47.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	17.77	15.34	11.98	13.67	23.32	30.1	17.27	28.26	17.31	25.11	29.65	19.74
Merged-chr10-59636887-3	chr10	59636786	59636986	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20194.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	14.13	18.11	30.23	26.14	27.41	22.58	9.97	25.79	35.21	15.57	31.15	17.23
Merged-chr10-121516408-3	chr10	121516321	121516521	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40171.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	22.21	11.82	20.54	14.88	27.0	16.93	9.97	19.65	24.39	18.58	30.15	17.54
Merged-chr8-126598453-3	chr8	126598358	126598558	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5022.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	17.36	14.09	23.96	26.14	34.36	23.52	24.91	40.01	33.44	35.15	61.3	43.86
Merged-chr2-118011917-3	chr2	118011825	118012025	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	99277.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	17.77	9.56	18.25	20.11	30.68	15.99	20.26	23.66	23.21	23.6	33.67	20.36
Merged-chr14-51894510-2	chr14	51894445	51894645	+	992.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039676, intron 3 of 3)	intron (NM_001039676, intron 3 of 3)	935.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	17.77	24.9	31.95	12.87	13.09	23.83	6.98	16.49	7.08	12.05	3.01	2.82
Merged-chr10-49075632-2	chr10	49075534	49075734	+	992.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	712303.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	2.42	6.04	5.13	3.62	77.73	89.37	75.4	104.83	26.75	29.62	35.17	11.9
Merged-chr15-39943264-3	chr15	39943119	39943319	+	992.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172814, intron 1 of 6)	CpG	775.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	14.13	13.83	12.55	15.69	22.5	16.62	19.6	14.38	11.21	13.05	28.64	12.22
Merged-chr13-115136973-3	chr13	115136880	115137080	+	992.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35016.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	14.13	24.4	21.11	31.77	20.05	33.24	35.54	34.85	34.03	27.62	28.64	22.24
Merged-chr8-128488679-3	chr8	128488561	128488761	+	992.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	129420.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	23.82	14.09	18.83	34.19	23.73	10.66	19.93	33.36	31.86	17.07	21.1	20.05
Merged-chr3-144123664-3	chr3	144123584	144123784	+	992.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78648.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	17.77	25.15	31.38	15.28	13.91	15.05	12.95	17.83	26.36	8.54	19.6	20.36
Merged-chr4-89137609-5	chr4	89137494	89137694	+	992.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024433, intron 1 of 7)	CpG	224.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	16.15	14.84	15.97	19.71	20.46	21.95	39.86	23.05	19.67	26.11	22.61	21.93
Merged-chr5-36814729-3	chr5	36814626	36814826	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15923.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	15.75	22.89	18.25	17.29	19.64	30.42	10.63	21.08	25.96	23.6	16.58	15.35
Merged-chr17-69157565-3	chr17	69157452	69157652	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	808.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	12.52	10.31	19.4	24.53	13.5	20.7	25.91	22.35	17.31	18.58	19.09	14.41
Merged-chr16-38400057-1	chr16	38399957	38400157	+	992.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33088.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	1.62	3.52	10.84	4.02	18.41	14.74	7.97	19.15	5.31	1.0	6.03	3.45
Merged-chr8-111526781-3	chr8	111526670	111526870	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4663.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	34.73	33.45	29.09	49.87	8.18	25.4	16.61	14.8	45.04	29.12	49.24	23.18
Merged-chr4-132608409-3	chr4	132608311	132608511	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30635.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	16.15	10.31	23.96	16.09	16.77	20.07	12.62	13.93	21.64	27.11	29.14	12.53
Merged-chr1-178303562-2	chr1	178303478	178303678	+	992.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15575.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	5.65	9.81	2.28	2.41	17.59	12.54	16.61	16.79	17.51	17.07	18.09	12.84
Merged-chr9-22314193-3	chr9	22314087	22314287	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6549.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	25.04	14.09	15.97	36.6	31.09	16.31	23.58	35.1	36.19	34.65	32.16	13.78
Merged-chr10-67748800-3	chr10	67748707	67748907	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163855.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	14.94	17.36	23.39	43.44	14.73	14.74	13.95	30.84	22.23	14.56	22.61	12.53
Merged-chr7-19360102-3	chr7	19359984	19360184	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-601.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	16.15	15.09	6.85	15.69	14.73	16.31	12.62	15.14	23.6	15.06	16.58	18.8
Merged-chr6-146222827-1	chr6	146222727	146222927	+	992.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	279396.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	8.08	2.52	6.28	4.83	15.96	16.93	10.96	14.86	11.41	5.02	4.02	5.01
Merged-chr10-61452342-2	chr10	61452249	61452449	+	992.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010124, intron 1 of 2)	CpG	320.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	12.92	10.31	8.56	15.69	17.59	11.92	8.64	14.89	13.18	21.59	18.09	12.84
Merged-chr11-121769006-2	chr11	121768909	121769109	+	992.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61209.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	9.29	3.52	12.55	6.44	18.82	22.26	9.3	13.74	16.33	16.57	23.62	18.8
Merged-chr1-13295715-2	chr1	13295624	13295824	+	992.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	Tigger5|DNA|TcMar-Tigger	76705.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.67	11.32	19.97	16.89	5.32	1.88	4.98	12.5	26.95	14.56	27.64	15.98
Merged-chr10-89745665-3	chr10	89745556	89745756	+	992.6587519999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029166, intron 1 of 20)	CpG	665.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	5.25	12.58	7.42	13.27	6.95	9.09	14.95	6.48	12.0	15.06	14.07	10.65
Merged-chr19-5625508-3	chr19	5625395	5625595	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-11995.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	14.13	28.93	33.66	28.15	35.59	50.49	30.23	31.99	36.19	41.67	29.65	23.81
Merged-chr16-33691493-3	chr16	33691394	33691594	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	7028.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	24.63	26.41	42.21	39.01	25.36	30.1	17.94	24.0	17.31	22.09	23.11	11.28
Merged-chr11-17180910-3	chr11	17180805	17181005	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	21607.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	15.75	20.63	37.65	34.99	23.73	32.3	18.27	43.96	30.49	23.6	24.62	17.23
Merged-chr5-66051822-3	chr5	66051733	66051933	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	MIR|SINE|MIR	46346.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	17.77	17.1	31.95	14.08	14.73	28.22	14.28	33.64	34.81	36.15	43.72	23.49
Merged-chr17-47011159-3	chr17	47011051	47011251	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-619.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	21.0	15.09	19.4	18.5	20.86	30.42	9.97	13.85	25.37	14.06	32.16	15.04
Merged-chr9-40318335-3	chr9	40318225	40318425	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2998.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	24.63	20.88	20.54	15.69	15.14	17.87	19.93	26.94	27.34	22.59	23.62	15.98
Merged-chr18-76929421-3	chr18	76929322	76929522	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	-605.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	29.88	21.13	20.54	16.89	24.96	32.3	17.61	33.22	37.37	18.08	48.24	13.47
Merged-chr15-25531115-3	chr15	25531008	25531208	+	992.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91442.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	35.53	26.16	20.54	25.74	28.23	27.91	24.25	18.39	33.63	43.18	25.63	9.71
Merged-chr1-155051119-5	chr1	155050992	155051192	+	992.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32172.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	14.13	15.85	16.54	8.04	19.23	10.98	11.29	18.48	23.8	23.6	19.6	15.35
Merged-chr4-138012326-2	chr4	138012239	138012439	+	992.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	14514.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	18.17	14.34	12.55	16.49	27.82	12.54	21.59	40.07	0.39	0.0	1.0	0.31
Merged-chr3-137867776-5	chr3	137867643	137867843	+	992.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033155)	promoter-TSS (NM_001033155)	68.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	16.15	11.32	10.84	7.64	14.73	24.77	16.94	16.35	40.91	22.09	42.21	13.16
Merged-chr7-130866334-3	chr7	130866226	130866426	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 1 of 9)	CpG	602.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	16.96	10.06	7.99	16.89	15.14	17.25	16.94	11.38	16.92	17.07	22.11	21.3
Merged-chr5-67327422-3	chr5	67327320	67327520	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178651, intron 4 of 17)	intron (NM_178651, intron 4 of 17)	20465.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.86	9.81	19.4	16.89	13.09	28.54	25.24	26.66	34.62	17.57	26.13	18.48
Merged-chr17-34649382-3	chr17	34649285	34649485	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2239.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	23.82	17.86	23.96	23.33	15.14	16.93	5.65	16.82	24.98	18.58	22.11	14.41
Merged-chr11-107594156-3	chr11	107594061	107594261	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-43561.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	27.05	31.94	27.95	32.98	23.32	37.63	8.3	32.13	79.07	56.74	49.75	30.7
Merged-chr8-37215765-3	chr8	37215681	37215881	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191543.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	14.94	11.07	24.53	21.32	16.36	19.44	21.92	38.97	36.98	23.6	35.17	21.93
Merged-chr12-91852947-3	chr12	91852857	91853057	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3800.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	25.04	17.61	18.25	16.09	22.91	34.18	29.23	24.73	42.09	46.19	23.11	16.6
Merged-chr1-9769761-3	chr1	9769677	9769877	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040462, intron 2 of 3)	RMER4B|LTR|ERVK	-21395.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	16.15	12.07	18.83	11.26	19.64	26.03	12.29	17.8	36.58	26.61	45.22	18.8
Merged-chr7-143449745-3	chr7	143449639	143449839	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11311.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	21.8	14.84	21.68	28.96	4.91	12.23	11.29	13.23	17.31	17.57	23.11	16.92
Merged-chr9-13298072-3	chr9	13297948	13298148	+	992.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51092.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	17.77	27.67	21.68	17.7	26.59	20.38	12.95	16.63	20.85	24.1	20.1	9.4
Merged-chr6-136466107-3	chr6	136466029	136466229	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50560.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	10.9	12.58	2.28	19.71	13.91	13.8	16.94	14.72	15.34	11.05	17.59	12.22
Merged-chr5-122146499-3	chr5	122146410	122146610	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8448.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	21.4	11.32	31.95	21.72	30.68	28.22	19.6	18.48	30.09	34.65	15.07	33.52
Merged-chr16-24282657-3	chr16	24282566	24282766	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110684.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	14.54	20.63	21.68	28.15	8.18	15.05	11.63	18.28	15.34	15.57	26.13	10.96
Merged-chr18-53904448-3	chr18	53904342	53904542	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42329.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	14.13	18.11	18.83	23.33	22.09	14.74	10.3	19.71	37.37	19.58	35.17	24.43
Merged-chr11-87025542-3	chr11	87025433	87025633	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31771.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	31.09	25.15	31.95	13.67	54.0	69.61	22.26	21.64	47.8	63.27	29.65	25.69
Merged-chr7-91506810-2	chr7	91506707	91506907	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	416021.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	14.94	12.83	14.83	22.12	22.91	16.31	25.91	42.25	2.16	0.0	1.0	2.19
Merged-chr9-90108471-3	chr9	90108381	90108581	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 2 of 12)	PB1|SINE|Alu	6339.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	14.13	14.09	34.8	23.33	24.96	15.05	23.58	36.11	21.24	18.08	54.27	24.43
Merged-chr10-51491288-3	chr10	51491178	51491378	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291894, intron 2 of 8)	intron (NM_001291894, intron 2 of 8)	380.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	17.77	16.85	13.12	8.85	22.5	37.94	12.62	8.27	27.14	37.66	20.1	10.65
Merged-chr2-4882032-6	chr2	4881964	4882164	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175400, intron 1 of 8)	CpG	500.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	13.73	12.58	8.56	12.07	6.55	10.03	16.61	9.48	28.13	28.62	28.64	10.65
Merged-chr1-43811960-3	chr1	43811868	43812068	+	992.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	15740.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	18.17	17.61	30.8	19.71	24.14	38.26	20.93	26.1	27.34	20.59	14.57	13.16
Merged-chr4-119239443-4	chr4	119239351	119239551	+	992.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5622.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	12.11	12.32	19.4	12.07	6.95	12.86	12.62	9.93	12.78	24.1	16.08	14.41
Merged-chr7-90216721-3	chr7	90216634	90216834	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48698.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	14.94	8.8	17.68	18.1	36.41	23.83	18.93	30.9	27.34	23.1	28.64	25.06
Merged-chr2-127788913-3	chr2	127788809	127789009	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-18.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	16.56	16.35	17.68	15.28	26.59	26.34	10.96	22.07	29.31	35.65	35.68	22.87
Merged-chr3-69655219-3	chr3	69655117	69655317	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	-56257.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	26.65	26.66	17.68	29.36	18.0	20.38	19.6	14.47	35.8	24.6	32.16	19.11
Merged-chr8-105938104-3	chr8	105938001	105938201	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013640, exon 1 of 8)	5' UTR (NM_013640, exon 1 of 8)	291.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	15.75	17.36	16.54	12.47	13.91	20.07	8.3	11.64	26.95	17.07	30.15	10.96
Merged-chr19-10859468-3	chr19	10859364	10859564	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133804, intron 10 of 10)	intron (NM_133804, intron 10 of 10)	10315.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	15.75	29.18	25.1	12.47	26.18	25.71	9.3	16.29	28.32	30.13	36.18	15.98
Merged-chr16-92021844-3	chr16	92021736	92021936	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36486.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	7.67	17.36	17.68	8.04	17.18	25.09	10.63	17.72	23.8	19.58	21.61	10.34
Merged-chr8-105622652-3	chr8	105622588	105622788	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081241)	TTS (NM_001081241)	7222.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	16.56	19.37	14.26	18.1	21.68	27.59	10.96	14.94	20.06	29.12	23.62	11.9
Merged-chr14-55161498-3	chr14	55161390	55161590	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44555.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	18.17	21.88	14.83	19.31	20.46	43.27	20.26	16.35	42.48	26.61	43.72	15.98
Merged-chr2-118263570-3	chr2	118263492	118263692	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6626.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	27.86	27.92	29.09	27.35	25.36	32.93	23.25	22.18	55.66	45.69	39.7	11.28
Merged-chr2-170218654-3	chr2	170218575	170218775	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76000.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	18.57	10.82	23.96	14.88	15.14	23.83	10.63	9.7	29.9	25.61	20.1	10.34
Merged-chr10-128091633-3	chr10	128091560	128091760	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1123.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	23.02	21.63	13.12	15.28	20.05	40.45	21.92	16.88	31.86	39.16	38.69	20.99
Merged-chr11-70650585-3	chr11	70650500	70650700	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316728, intron 8 of 9)	intron (NM_001316728, intron 8 of 9)	3313.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	13.33	15.85	17.11	15.28	19.23	18.19	8.3	12.67	20.06	21.59	23.11	5.33
Merged-chr15-100622331-3	chr15	100622244	100622444	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033872, intron 3 of 3)	intron (NM_001033872, intron 3 of 3)	6682.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	26.25	15.85	31.95	22.12	17.59	13.8	19.93	38.33	18.1	14.06	21.1	18.8
Merged-chr17-87459452-3	chr17	87459340	87459540	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12505.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	13.33	13.58	14.83	24.94	17.18	11.29	11.96	21.11	10.62	13.05	21.1	6.89
Merged-chr10-84576961-2	chr10	84576864	84577064	+	992.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	17.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	18.17	26.41	16.54	16.89	20.05	21.01	23.92	23.1	16.72	24.6	21.1	11.59
Merged-chr11-23768068-3	chr11	23767962	23768162	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2908.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	16.56	14.84	37.08	9.65	18.41	14.74	12.62	19.77	18.1	18.58	21.1	13.47
Merged-chr7-107277171-1	chr7	107277071	107277271	+	992.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	67726.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	1.62	4.28	9.13	7.24	16.77	15.68	11.63	19.09	0.2	6.03	2.01	1.25
Merged-chr1-180343052-3	chr1	180342954	180343154	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-12505.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	30.28	22.89	34.23	30.97	12.27	11.92	11.63	28.91	25.57	15.57	28.64	17.54
Merged-chr19-60580261-3	chr19	60580219	60580419	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	704.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	19.79	20.88	12.55	11.66	19.64	21.32	25.91	17.89	34.22	22.59	25.12	17.86
Merged-chr7-130903091-3	chr7	130902988	130903188	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-5180.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	19.38	20.63	21.68	20.91	14.32	25.4	19.27	29.33	23.01	18.58	17.59	22.24
Merged-chr11-120581619-3	chr11	120581516	120581716	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	4.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	34.32	27.42	15.97	24.13	30.68	35.12	21.92	18.64	56.45	49.71	30.65	24.75
Merged-chrX-21565537-3	chrX	21565446	21565646	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80922.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	37.15	23.64	26.24	42.23	38.86	27.28	18.6	29.94	21.44	34.14	40.2	14.41
Merged-chr17-10319318-3	chr17	10319216	10319416	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	45.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	26.25	33.45	13.12	16.49	18.41	43.59	11.96	26.3	46.62	34.65	59.8	14.1
Merged-chr17-78891219-3	chr17	78891140	78891340	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163625, intron 4 of 6)	MTE2a|LTR|ERVL-MaLR	-8668.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	13.73	15.09	33.66	19.71	24.14	15.05	47.5	40.79	99.52	117.49	101.0	90.22
Merged-chr8-25973325-3	chr8	25973222	25973422	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 1 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	3422.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	12.52	24.65	26.81	30.97	32.73	32.61	27.57	34.04	135.12	90.38	163.31	115.28
Merged-chr1-170845923-3	chr1	170845880	170846080	+	992.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 4 of 15)	RMER4B|LTR|ERVK	21791.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	13.33	20.12	13.69	33.38	15.55	13.48	16.28	11.55	14.75	15.57	10.05	8.77
Merged-chr14-55815527-3	chr14	55815428	55815628	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-9267.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	24.63	34.21	9.13	15.69	37.64	52.05	26.24	38.13	34.42	34.65	18.09	22.56
Merged-chr4-40251139-3	chr4	40251027	40251227	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11302.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	22.21	19.12	26.24	20.11	19.23	12.54	22.59	22.82	23.8	16.07	22.11	12.84
Merged-chr5-99906350-3	chr5	99906249	99906449	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	72589.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	11.71	28.17	22.82	27.75	36.0	51.43	41.85	44.5	96.77	98.41	147.23	65.47
Merged-chr6-71980242-3	chr6	71980164	71980364	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009088)	TTS (NM_009088)	62264.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	18.17	16.1	13.69	22.93	37.64	54.88	19.27	35.1	35.21	49.71	29.65	11.9
Merged-chr18-61767909-3	chr18	61767805	61768005	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	18757.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	21.4	19.12	13.69	27.35	33.55	52.37	30.89	22.43	27.14	33.64	38.19	13.47
Merged-chr2-62645625-3	chr2	62645523	62645723	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027835, exon 1 of 16)	exon (NM_027835, exon 1 of 16)	632.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	19.79	35.97	14.83	11.26	20.86	42.65	15.61	11.16	17.31	22.09	22.61	11.59
Merged-chr17-46074059-3	chr17	46073868	46074068	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37036.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	12.11	14.84	13.12	5.63	17.18	23.2	10.3	16.85	19.28	16.57	14.07	14.72
Merged-chrX-98880491-3	chrX	98880396	98880596	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313756, intron 2 of 2)	intron (NM_001313756, intron 2 of 2)	10529.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	19.38	10.56	38.22	17.7	28.23	15.05	20.59	26.55	24.78	17.07	25.63	11.59
Merged-chr10-86972148-3	chr10	86972038	86972238	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 6 of 68)	LTR41B|LTR|ERVL	35804.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	18.17	19.37	30.23	24.13	22.5	33.87	11.29	33.93	34.03	22.59	44.22	23.18
Merged-chr9-70833269-3	chr9	70833168	70833368	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101540.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	14.13	20.88	9.7	18.1	20.86	24.46	9.63	22.46	29.5	14.56	17.59	6.58
Merged-chr11-110337602-3	chr11	110337477	110337677	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_147219, exon 1 of 39)	5' UTR (NM_147219, exon 1 of 39)	139.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	20.59	15.59	14.26	14.88	18.82	14.74	17.27	13.18	15.93	20.08	15.07	12.22
Merged-chr7-132653237-3	chr7	132653112	132653312	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	42569.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	19.79	13.08	16.54	24.13	20.86	26.03	15.61	35.1	15.74	14.06	37.69	11.9
Merged-chr15-98504661-3	chr15	98504561	98504761	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	7187.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	17.77	18.61	17.68	22.12	23.73	26.65	11.96	16.01	24.59	16.07	20.1	7.83
Merged-chr10-82670433-3	chr10	82670333	82670533	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029102, intron 2 of 9)	intron (NM_029102, intron 2 of 9)	20217.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	16.15	22.13	29.66	17.29	22.91	16.62	17.61	27.81	30.29	16.57	50.25	16.29
Merged-chr11-83595910-3	chr11	83595801	83596001	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 1 of 8)	MLTR14|LTR|ERV1	-2814.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	32.3	19.87	17.68	26.95	35.18	40.14	11.29	27.73	48.58	28.12	49.75	23.81
Merged-chr4-147814703-3	chr4	147814601	147814801	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-4913.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	25.84	18.11	19.4	18.5	12.27	22.26	11.96	10.57	33.83	42.18	30.15	16.29
Merged-chr4-89351260-3	chr4	89351154	89351354	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40222.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	29.88	44.02	19.97	16.09	26.59	71.49	39.86	22.01	46.62	55.23	26.13	11.28
Merged-chr10-117944073-3	chr10	117943983	117944183	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 3 of 3)	MTC|LTR|ERVL-MaLR	18624.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	12.92	10.06	24.53	16.49	10.23	20.38	12.95	19.54	60.78	34.65	57.79	43.23
Merged-chr11-78115516-3	chr11	78115424	78115624	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20851.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	26.65	25.91	30.23	32.98	22.09	17.25	9.97	16.79	32.26	30.13	35.17	19.11
Merged-chr11-101463102-3	chr11	101463018	101463218	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	3081.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	27.86	29.43	23.96	20.51	35.59	60.52	8.64	35.52	53.5	47.7	27.64	34.77
Merged-chr1-125441873-3	chr1	125441780	125441980	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6153.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	21.4	16.6	16.54	27.35	30.68	29.79	17.61	34.26	23.41	15.57	40.7	33.21
Merged-chr5-109996453-3	chr5	109996353	109996553	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-74.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	14.54	17.36	25.1	35.8	18.41	29.16	19.6	19.21	49.37	38.16	75.37	45.74
Merged-chr10-40025314-3	chr10	40025226	40025426	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144821)	promoter-TSS (NM_144821)	-58.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	14.13	14.34	13.69	26.14	24.55	25.71	10.63	22.99	21.83	15.06	25.12	12.84
Merged-chr9-44571138-3	chr9	44571050	44571250	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33742.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	28.27	20.63	15.4	16.09	37.23	67.1	21.59	19.51	76.51	73.81	85.92	37.28
Merged-chr12-80816619-3	chr12	80816522	80816722	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	26090.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	46.84	28.67	22.82	24.13	36.82	45.78	10.63	19.15	37.76	53.22	38.69	22.56
Merged-chr9-65583257-3	chr9	65583155	65583355	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3168.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	17.77	23.14	21.68	24.13	18.0	26.03	10.3	12.42	21.83	17.57	31.66	18.48
Merged-chr9-74871488-3	chr9	74871384	74871584	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008262, intron 1 of 1)	intron (NM_008262, intron 1 of 1)	9563.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	15.34	11.82	22.82	15.28	26.59	15.68	17.27	26.07	24.19	25.11	51.76	20.05
Merged-chr6-115555795-3	chr6	115555674	115555874	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199033, intron 4 of 11)	intron (NM_199033, intron 4 of 11)	11070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	17.77	13.08	33.09	16.09	36.82	38.26	29.56	35.44	31.27	23.6	20.1	28.51
Merged-chr3-149380284-3	chr3	149380180	149380380	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105543.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	12.92	22.13	18.25	46.25	38.86	33.87	29.23	45.84	32.45	34.65	52.76	32.58
Merged-chr1-131526548-3	chr1	131526420	131526620	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 1 of 22)	CpG	841.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	17.77	18.11	15.97	22.93	18.41	11.6	7.64	9.62	16.72	9.54	25.12	17.23
Merged-chr8-69791254-3	chr8	69791133	69791333	+	992.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133224)	promoter-TSS (NM_133224)	70.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	23.42	14.34	7.99	10.46	24.14	27.28	8.64	18.34	32.65	20.08	23.62	14.41
Merged-chr2-140671535-3	chr2	140671445	140671645	+	992.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178382)	promoter-TSS (NM_178382)	-69.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	16.96	18.11	23.96	20.11	24.55	23.83	19.6	27.14	19.28	24.6	28.64	9.71
Merged-chr13-113600141-3	chr13	113600024	113600224	+	992.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	18440.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	18.98	8.8	26.81	4.02	22.91	30.1	19.93	35.13	25.57	27.11	25.63	19.11
Merged-chr9-115487363-3	chr9	115487258	115487458	+	992.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	105539.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	24.63	29.93	19.97	40.22	28.23	24.77	13.62	21.79	45.24	66.78	49.24	22.24
Merged-chr18-25679409-2	chr18	25679259	25679459	+	992.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146295, exon 2 of 2)	exon (NM_001146295, exon 2 of 2)	389.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	23.82	9.56	10.27	16.09	24.14	15.37	17.61	15.45	4.92	7.03	8.54	12.53
Merged-chrX-163822500-2	chrX	163822411	163822611	+	992.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-61179.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	4.85	8.55	4.56	10.05	16.77	10.66	14.95	22.96	19.67	18.58	25.12	11.59
Merged-chr10-91270606-4	chr10	91270487	91270687	+	992.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49968.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	8.88	10.31	13.12	17.29	23.32	17.25	13.95	12.48	13.77	15.57	28.14	15.98
Merged-chr1-135368380-3	chr1	135368269	135368469	+	992.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053106)	TTS (NM_053106)	6694.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	24.23	18.61	10.27	12.47	14.73	17.87	6.64	18.98	40.71	22.09	26.13	24.43
Merged-chr2-69613495-3	chr2	69613397	69613597	+	992.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27430.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	19.79	15.85	18.25	19.31	24.96	31.67	33.88	24.08	38.75	38.66	35.17	14.72
Merged-chr4-58506957-3	chr4	58506862	58507062	+	992.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-7559.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	20.59	16.85	26.81	35.8	11.45	21.95	27.9	30.67	22.62	16.07	23.62	16.92
Merged-chr2-174330376-2	chr2	174330276	174330476	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001310083, exon 2 of 13)	exon (NM_001310083, exon 2 of 13)	287.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	21.8	20.37	12.55	15.69	13.09	23.83	23.58	13.12	19.28	18.58	17.59	11.9
Merged-chr18-79759058-3	chr18	79758956	79759156	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-287839.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	5.65	13.58	19.97	21.72	13.09	4.39	13.95	26.16	23.41	25.11	20.6	14.41
Merged-chr4-103282447-2	chr4	103282357	103282557	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163494, intron 1 of 7)	RLTR22_Mur|LTR|ERVK	8406.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	7.67	11.57	23.39	20.91	19.64	19.13	18.6	20.8	1.97	0.0	1.0	5.33
Merged-chr1-172501157-3	chr1	172501072	172501272	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	926.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	25.84	15.59	14.83	14.08	36.82	46.1	28.23	28.57	44.45	58.75	44.22	25.06
Merged-chr5-44050371-3	chr5	44050266	44050466	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	44402.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	12.52	15.85	25.1	30.57	15.14	13.48	15.28	27.7	34.62	34.14	33.16	18.48
Merged-chr5-20967992-3	chr5	20967876	20968076	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16154.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	14.13	9.81	23.96	30.97	16.36	34.18	20.59	41.94	23.01	17.07	28.64	16.29
Merged-chr12-21368622-2	chr12	21368589	21368789	+	992.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	4943.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.81	5.28	1.14	5.23	2.45	2.82	7.64	7.71	50.35	40.67	50.75	23.18
Merged-chr15-93270452-3	chr15	93270352	93270552	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	4727.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	19.79	15.85	23.39	26.55	17.59	23.52	10.96	19.6	21.44	14.56	20.6	10.65
Merged-chr1-84199113-3	chr1	84199006	84199206	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	19855.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	14.94	20.12	18.25	20.51	24.96	15.05	14.62	39.48	26.55	18.08	35.17	12.53
Merged-chr4-120872571-1	chr4	120872471	120872671	+	992.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_182929, exon 2 of 8)	5' UTR (NM_182929, exon 2 of 8)	17772.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	5.65	4.53	6.85	8.04	13.91	25.71	7.97	13.71	8.85	7.53	5.02	6.58
Merged-chr9-55308704-3	chr9	55308612	55308812	+	991.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18201.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	28.67	18.61	25.1	20.11	36.41	25.4	23.92	33.56	18.1	19.08	23.11	10.34
Merged-chr3-8916496-3	chr3	8916410	8916610	+	991.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	7347.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	20.19	28.67	18.25	16.89	21.68	28.54	14.28	18.17	27.34	36.15	31.15	27.57
Merged-chr13-41432499-3	chr13	41432402	41432602	+	991.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	54858.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	15.34	17.36	14.83	22.93	28.23	30.73	11.29	17.36	18.88	20.59	23.11	23.81
Merged-chr11-53783919-3	chr11	53783830	53784030	+	991.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13457.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	17.36	13.33	12.55	8.04	17.18	26.34	9.97	11.19	29.7	25.11	26.13	11.9
Merged-chr1-7397038-3	chr1	7396923	7397123	+	991.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	308103.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	14.13	22.64	11.41	22.52	11.05	15.68	8.97	14.75	33.83	23.1	28.64	20.05
Merged-chr4-155559658-3	chr4	155559535	155559735	+	991.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001160017)	TTS (NM_001160017)	-2746.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	14.94	18.36	16.54	14.08	23.32	13.8	12.62	19.37	16.52	15.57	27.64	10.65
Merged-chr19-45161287-3	chr19	45161198	45161398	+	991.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10583.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	26.25	16.35	14.26	6.44	15.55	14.11	5.31	17.05	16.92	19.08	22.61	11.9
Merged-chr6-108517784-3	chr6	108517700	108517900	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 57 of 61)	intron (NM_010585, intron 57 of 61)	28057.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	14.94	11.07	16.54	27.75	22.5	26.65	18.6	35.66	19.67	5.52	19.09	11.9
Merged-chr2-36271309-3	chr2	36271194	36271394	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40868.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	18.98	13.58	24.53	23.33	32.73	19.13	11.96	24.79	16.52	14.56	21.1	11.59
Merged-chr4-45013228-3	chr4	45013132	45013332	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-820.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	14.54	23.64	15.4	20.91	16.36	21.01	13.95	14.92	19.87	20.08	15.58	10.34
Merged-chr3-37073435-1	chr3	37073335	37073535	+	991.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009350, intron 5 of 11)	L1_Mus3|LINE|L1	9779.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	7.27	4.78	7.99	12.47	11.45	22.26	23.58	10.74	6.1	4.52	18.09	2.51
Merged-chr4-19872999-3	chr4	19872905	19873105	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49561.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	29.88	15.85	30.8	32.58	26.18	35.75	34.55	52.43	22.62	21.59	36.68	12.53
Merged-chr8-126474952-3	chr8	126474763	126474963	+	991.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159907, exon 1 of 30)	exon (NM_001159907, exon 1 of 30)	202.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	12.11	14.59	20.54	12.87	27.0	26.34	30.23	19.85	24.59	25.61	20.1	17.54
Merged-chr5-32139037-3	chr5	32138954	32139154	+	991.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2582.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	17.77	15.34	12.55	17.29	11.45	23.83	7.97	15.53	21.83	19.58	26.13	21.93
Merged-chr13-117242261-3	chr13	117242168	117242368	+	991.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	21695.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	13.33	11.82	50.2	26.14	55.64	53.31	61.45	70.26	49.37	30.63	55.27	36.65
Merged-chr15-85113660-3	chr15	85113549	85113749	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080470, intron 9 of 24)	intron (NM_080470, intron 9 of 24)	18308.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	21.0	15.59	19.97	12.47	19.64	19.76	8.97	16.74	32.06	32.13	32.66	22.24
Merged-chr14-9393594-3	chr14	9393500	9393700	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-490495.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	12.92	15.85	14.83	19.31	13.09	20.7	22.92	22.46	17.9	30.13	20.6	17.86
Merged-chr4-114947583-3	chr4	114947485	114947685	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21572.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	19.38	20.12	26.24	15.28	14.73	12.86	13.95	24.28	16.72	28.62	27.64	15.35
Merged-chr7-80091615-3	chr7	80091518	80091718	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16361.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	17.36	23.64	37.08	19.71	19.23	17.56	5.98	11.97	36.98	16.07	11.56	15.04
Merged-chr13-110601522-3	chr13	110601424	110601624	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	206480.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	18.57	16.35	8.56	16.89	22.91	40.45	22.92	28.99	47.01	35.15	29.14	17.23
Merged-chr11-23696051-3	chr11	23695954	23696154	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	30078.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	13.73	23.14	29.66	26.95	27.0	16.31	17.94	26.86	32.85	21.09	32.66	23.49
Merged-chr11-23971203-3	chr11	23971109	23971309	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75939.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	13.33	23.64	46.21	39.01	40.09	33.87	39.86	50.94	52.52	40.67	37.18	25.06
Merged-chr12-100520961-3	chr12	100520855	100521055	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033213)	promoter-TSS (NM_001033213)	-133.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	12.11	12.07	6.28	18.9	16.36	26.34	18.6	15.81	17.11	18.08	27.64	4.39
Merged-chr2-157156337-3	chr2	157156232	157156432	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 19 of 21)	CT-rich|Low_complexity|Low_complexity	-21110.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	23.42	11.32	21.68	20.91	19.64	23.52	18.27	19.57	19.47	19.58	28.14	17.54
Merged-chr1-34484618-3	chr1	34484502	34484702	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13810.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	15.34	11.07	22.82	17.29	22.5	16.62	15.61	21.7	31.27	32.64	25.12	21.3
Merged-chr11-45750490-3	chr11	45750442	45750642	+	991.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57541.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	12.92	10.82	23.96	31.37	15.55	16.62	15.61	26.97	16.72	4.52	11.05	10.96
Merged-chr2-165493303-3	chr2	165493214	165493414	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007581)	promoter-TSS (NM_001007581)	0.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	36.75	24.65	17.68	25.74	34.77	21.32	13.29	20.75	22.62	21.09	17.59	26.94
Merged-chr1-65010341-3	chr1	65010249	65010449	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22410.0	NM_001310617	70861.0	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	14.13	19.12	30.23	20.91	14.73	28.85	22.92	17.8	33.83	27.11	29.14	23.18
Merged-chr11-55463159-3	chr11	55463066	55463266	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1958.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	17.36	21.88	12.55	28.15	25.36	28.22	23.92	32.33	36.98	24.1	58.29	20.36
Merged-chr4-135948384-3	chr4	135948269	135948469	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	963.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	15.34	16.1	23.96	13.67	18.0	30.73	12.29	26.24	25.18	25.11	28.64	18.48
Merged-chr6-108327825-3	chr6	108327723	108327923	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	114727.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	12.52	12.58	20.54	16.09	14.73	23.2	13.62	21.31	15.54	21.59	20.1	11.9
Merged-chr19-60819325-1	chr19	60819225	60819425	+	991.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7770.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	2.42	1.26	6.85	6.03	3.27	1.25	2.66	3.2	15.54	18.08	27.13	10.34
Merged-chr14-25461542-3	chr14	25461418	25461618	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2333.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	15.75	20.12	22.82	16.49	38.86	40.14	28.23	37.43	16.72	15.06	7.03	14.1
Merged-chr11-62613886-3	chr11	62613767	62613967	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357955, intron 2 of 3)	intron (NM_001357955, intron 2 of 3)	9337.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	20.59	22.39	20.54	17.7	32.73	30.1	8.3	23.38	39.53	14.56	22.11	20.99
Merged-chr6-136809871-3	chr6	136809768	136809968	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1620.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	14.94	25.91	13.69	21.72	13.5	28.85	15.94	18.45	37.57	33.64	28.64	17.23
Merged-chr10-76962069-3	chr10	76961967	76962167	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-120.0	NM_021568	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	20.19	24.9	14.83	21.72	90.82	136.4	76.4	118.63	35.21	39.67	44.72	23.81
Merged-chr14-27335973-3	chr14	27335827	27336027	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289687)	promoter-TSS (NM_001289687)	-110.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	14.94	11.82	15.97	19.31	27.82	21.64	22.59	24.22	17.9	21.59	33.67	9.08
Merged-chr5-65326351-3	chr5	65326255	65326455	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	9284.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	22.21	12.32	17.68	20.51	18.0	14.74	13.62	18.93	18.49	27.11	24.12	24.12
Merged-chr15-50157177-2	chr15	50157065	50157265	+	991.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	731884.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	33.52	19.87	26.24	12.87	3.27	0.0	0.66	0.9	32.45	26.61	50.75	11.28
Merged-chr11-94381090-2	chr11	94381015	94381215	+	991.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11861.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	2.83	5.53	6.28	8.45	17.59	12.86	19.93	15.25	28.32	20.08	8.54	13.16
Merged-chr8-119844837-3	chr8	119844733	119844933	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4254.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	35.13	23.64	63.89	59.93	42.14	26.34	26.91	66.62	33.63	21.09	49.75	40.72
Merged-chrX-36803353-3	chrX	36803245	36803445	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7748.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	14.94	15.85	27.38	20.91	21.68	14.74	21.59	22.65	17.31	16.07	20.1	18.17
Merged-chr1-43507973-3	chr1	43507879	43508079	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	URR1B|DNA|hAT-Charlie	62228.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	8.08	12.32	29.09	21.72	23.32	14.11	10.63	28.29	26.55	18.58	28.64	20.68
Merged-chr4-150076406-3	chr4	150076288	150076488	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	7934.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	12.52	18.36	37.65	20.11	45.41	50.17	69.09	46.29	66.68	60.75	51.25	37.91
Merged-chr17-46904021-3	chr17	46903942	46904142	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6443.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	15.75	24.15	18.25	17.7	18.41	21.01	9.3	22.57	24.0	26.11	36.18	19.74
Merged-chr17-47688992-3	chr17	47688947	47689147	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025365)	promoter-TSS (NM_025365)	-661.0	NM_001164729	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	16.15	14.34	12.55	14.08	11.45	23.52	6.31	12.36	13.37	14.56	14.57	9.08
Merged-chr4-33073177-3	chr4	33073083	33073283	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008076, intron 2 of 8)	B2_Mm2|SINE|B2	10071.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	25.04	24.15	22.82	22.93	18.41	59.58	17.94	21.34	26.16	35.65	40.2	12.22
Merged-chr10-14130377-3	chr10	14130282	14130482	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164003.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	42.8	34.21	50.77	43.44	30.27	40.45	40.86	45.17	37.57	41.67	29.65	15.98
Merged-chr9-105034163-3	chr9	105034064	105034264	+	991.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19104.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	45.63	23.39	27.38	35.8	25.77	16.62	27.24	22.79	15.34	29.62	21.1	17.23
Merged-chr14-50838635-2	chr14	50838536	50838736	+	991.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009351, exon 35 of 55)	exon (NM_009351, exon 35 of 55)	30720.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	16.15	19.62	21.11	21.72	16.36	13.17	13.29	24.59	28.72	19.08	28.64	16.92
Merged-chr1-183804004-3	chr1	183803899	183804099	+	991.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55022.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	14.94	14.34	16.54	20.91	9.82	15.37	17.27	16.6	20.26	20.08	25.12	10.65
Merged-chr6-34906930-3	chr6	34906818	34907018	+	991.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3913.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	23.82	14.59	17.68	20.91	34.77	27.59	40.19	31.43	35.8	9.54	23.11	15.35
Merged-chr9-92250562-3	chr9	92250421	92250621	+	991.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011636, intron 1 of 8)	CpG	327.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	25.84	12.07	16.54	33.78	29.05	27.91	45.18	50.27	23.8	22.59	35.17	12.84
Merged-chr8-90965786-5	chr8	90965686	90965886	+	991.542847	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 4 of 39)	PB1D10|SINE|Alu	33537.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.44	6.29	14.83	11.66	4.5	11.6	14.28	10.07	9.64	25.11	17.08	9.4
Merged-chr6-83502425-3	chr6	83502350	83502550	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4519.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	23.82	17.36	21.11	21.72	22.91	14.42	8.3	20.24	31.67	19.08	35.68	13.47
Merged-chr7-74908507-3	chr7	74908400	74908600	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121711.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	18.98	11.32	34.8	39.42	23.32	11.6	23.25	34.96	32.45	25.61	45.22	28.82
Merged-chr7-99089115-3	chr7	99089007	99089207	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52037.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	23.42	16.1	44.5	24.94	32.32	38.26	24.25	29.52	23.6	21.09	16.58	15.35
Merged-chr6-143130619-3	chr6	143130531	143130731	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	RMER6C|LTR|ERVK	23300.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	21.8	15.59	7.99	27.75	8.59	26.03	23.92	32.24	28.13	17.07	25.12	20.05
Merged-chr19-41346649-3	chr19	41346551	41346751	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	38419.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	29.88	11.57	35.37	14.08	31.91	39.2	33.55	24.9	59.2	33.14	62.81	21.3
Merged-chr18-3507330-2	chr18	3507228	3507428	+	991.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-629.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	12.92	13.08	9.7	5.23	18.0	15.05	23.92	9.0	13.77	13.56	18.59	14.1
Merged-chr13-80933106-3	chr13	80932999	80933199	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7304.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	13.73	13.33	14.83	21.32	18.41	17.56	19.27	55.01	18.49	15.06	26.13	20.99
Merged-chr14-54518745-3	chr14	54518638	54518838	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1268.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	19.79	9.56	18.25	32.18	20.46	21.64	16.28	47.41	25.18	16.57	29.14	15.66
Merged-chr5-19656171-3	chr5	19656071	19656271	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-251347.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	14.54	18.86	29.66	51.08	45.0	34.81	68.1	82.23	81.63	67.28	90.45	70.8
Merged-chr14-103071143-3	chr14	103071036	103071236	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033242, intron 1 of 3)	intron (NM_001033242, intron 1 of 3)	920.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	15.75	17.61	15.97	15.28	17.59	20.38	18.93	22.88	24.19	18.08	19.09	14.1
Merged-chr3-83843778-3	chr3	83843685	83843885	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2177.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	23.82	19.62	29.66	30.57	24.55	27.28	50.49	43.21	27.54	15.06	50.25	21.93
Merged-chr14-30574378-3	chr14	30574267	30574467	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009388, exon 14 of 14)	3' UTR (NM_009388, exon 14 of 14)	2218.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	41.99	23.39	21.68	30.97	15.55	24.46	19.6	28.09	59.79	44.19	57.28	36.03
Merged-chr17-26504262-5	chr17	26504130	26504330	+	991.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4242.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.5	4.28	5.13	7.64	13.91	14.42	7.64	7.01	15.14	9.54	9.55	6.27
Merged-chr12-79297310-3	chr12	79297226	79297426	+	991.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-25.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	25.04	33.7	23.96	31.77	45.41	45.47	5.31	27.34	45.04	49.21	48.24	27.88
Merged-chr17-46650481-3	chr17	46650378	46650578	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001316742)	TTS (NM_001316742)	140.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	34.32	20.63	19.97	34.99	40.91	40.76	34.21	27.5	28.32	34.65	38.19	18.48
Merged-chr6-134635444-3	chr6	134635348	134635548	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2960.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	24.23	28.67	33.66	22.52	16.77	28.54	9.3	28.65	19.67	19.08	41.71	13.78
Merged-chr7-118740176-3	chr7	118740077	118740277	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027815)	promoter-TSS (NM_027815)	-94.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	22.21	13.33	20.54	11.66	32.73	40.45	13.62	25.57	24.98	27.62	63.82	16.6
Merged-chr4-32055348-3	chr4	32055236	32055436	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91229.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	21.8	13.33	20.54	20.91	26.59	21.95	22.26	36.42	37.57	26.61	32.16	12.53
Merged-chr4-140572581-3	chr4	140572498	140572698	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	76158.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	46.84	15.85	54.19	33.78	27.82	36.69	31.22	27.87	27.34	24.1	24.12	14.1
Merged-chr1-16671276-3	chr1	16671193	16671393	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027415, intron 2 of 2)	B2_Mm2|SINE|B2	6102.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	21.8	32.7	37.08	16.09	12.27	14.42	4.32	16.07	45.43	27.11	25.63	12.84
Merged-chr6-89277780-3	chr6	89277691	89277891	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	7934.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	25.44	49.3	41.64	18.9	51.96	67.42	52.48	29.72	53.11	67.28	49.24	20.36
Merged-chr14-54641655-5	chr14	54641561	54641761	+	991.3583369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199470)	promoter-TSS (NM_199470)	-297.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	8.88	9.81	4.56	9.25	7.36	11.6	8.97	8.44	13.18	17.07	11.56	13.78
Merged-chr14-30715174-3	chr14	30715092	30715292	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	25.0	NM_001166531	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	7.67	14.34	13.12	10.05	18.41	12.86	12.62	11.66	9.44	10.04	16.08	5.95
Merged-chr6-120172431-3	chr6	120172319	120172519	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	-21404.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	23.82	16.35	25.67	16.09	74.05	51.74	60.46	61.04	20.85	25.61	16.58	10.96
Merged-chr11-82612205-3	chr11	82612097	82612297	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21156.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	23.42	18.11	21.68	6.84	16.36	22.89	12.62	15.5	21.44	19.58	32.16	20.68
Merged-chr10-68276991-3	chr10	68276865	68277065	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	(TG)n|Simple_repeat|Simple_repeat	1761.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	23.82	41.5	19.97	27.35	28.23	49.23	19.93	16.91	31.27	42.68	45.73	28.19
Merged-chr13-94050248-3	chr13	94050131	94050331	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7565.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	14.94	10.82	17.11	23.73	17.59	15.05	11.96	23.22	12.78	3.01	26.13	4.07
Merged-chr11-121697728-1	chr11	121697628	121697828	+	991.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4699.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.85	2.77	0.0	7.64	5.73	28.54	11.63	14.3	4.72	7.03	6.03	5.33
Merged-chr2-122163936-3	chr2	122163841	122164041	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3241.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	16.15	15.09	19.4	22.52	23.73	15.99	18.6	17.44	20.26	14.56	26.63	19.74
Merged-chr19-53464847-3	chr19	53464747	53464947	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028427)	promoter-TSS (NR_028427)	-51.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	46.44	30.94	29.09	35.8	54.82	74.0	49.49	65.83	21.05	15.57	19.09	5.33
Merged-chr3-32403290-3	chr3	32403192	32403392	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32859.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	25.04	20.37	17.11	6.84	39.27	59.58	16.61	17.05	27.54	39.67	22.11	14.41
Merged-chr1-170885112-1	chr1	170885012	170885212	+	991.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001356485, exon 1 of 5)	exon (NM_001356485, exon 1 of 5)	428.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	4.04	7.29	2.85	6.44	11.86	8.47	14.62	10.51	10.23	4.52	4.52	10.96
Merged-chr2-25607971-3	chr2	25607864	25608064	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029859)	TTS (NM_029859)	482.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	19.38	16.1	22.25	17.7	11.45	16.93	28.57	18.81	24.78	31.63	20.6	31.01
Merged-chr2-48695575-3	chr2	48695484	48695684	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118525.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	14.54	19.62	24.53	14.88	12.68	20.07	12.95	26.89	18.69	16.57	18.09	12.84
Merged-chr6-88069980-3	chr6	88069893	88070093	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14480.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	21.8	19.12	19.97	22.52	12.68	33.55	17.61	12.28	43.07	25.11	27.13	21.62
Merged-chr18-53770320-3	chr18	53770224	53770424	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25777.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	15.75	19.62	46.78	21.72	38.46	25.71	24.91	42.87	25.37	16.07	49.24	28.51
Merged-chr2-73485657-3	chr2	73485517	73485717	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	136.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	30.69	17.36	22.25	34.19	22.09	20.38	18.6	30.62	25.18	15.57	22.11	10.65
Merged-chr11-29495902-3	chr11	29495797	29495997	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	19136.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	17.77	27.92	19.4	21.32	48.27	36.37	27.57	42.5	30.09	18.58	17.08	24.12
Merged-chr10-128091131-3	chr10	128091036	128091236	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016774)	TTS (NM_016774)	-1647.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	33.11	33.45	21.11	17.29	19.64	39.2	7.64	23.69	31.47	39.67	45.22	33.21
Merged-chr2-52500083-3	chr2	52499988	52500188	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	58523.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	25.44	20.12	18.25	10.05	19.23	27.91	9.63	25.57	29.31	25.61	27.64	17.23
Merged-chr8-83657024-3	chr8	83656935	83657135	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018771, intron 1 of 6)	L2|LINE|L2	4357.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	12.92	16.35	19.97	12.47	22.09	17.56	18.27	15.28	20.46	25.11	20.1	20.36
Merged-chr9-55388320-2	chr9	55388200	55388400	+	991.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	61387.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	9.69	16.35	13.12	14.88	10.64	14.11	13.95	23.33	6.29	5.52	8.54	9.08
Merged-chr13-116000296-2	chr13	116000193	116000393	+	991.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	309395.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	1.26	0.0	0.0	29.86	21.95	17.94	60.79	39.73	25.11	31.15	10.02
Merged-chr6-116073122-3	chr6	116073022	116073222	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-78117.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	33.11	27.42	26.24	16.89	43.36	68.36	41.85	35.44	38.75	32.64	30.15	12.84
Merged-chr7-120754852-3	chr7	120754770	120754970	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177697, intron 3 of 33)	B1_Mus2|SINE|Alu	15313.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	35.94	20.12	33.09	32.98	18.82	20.7	11.63	18.95	21.05	19.08	19.09	20.68
Merged-chr4-16013326-3	chr4	16013220	16013420	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	518.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	22.61	14.59	9.7	16.09	31.91	44.21	26.91	34.99	37.76	35.15	35.17	32.58
Merged-chr2-151533822-3	chr2	151533718	151533918	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-8665.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	20.19	20.88	18.25	13.67	21.27	31.67	32.22	38.19	43.86	40.67	51.76	35.71
Merged-chr9-94668862-3	chr9	94668780	94668980	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	16.96	13.83	31.38	24.13	22.91	20.07	15.61	30.39	20.06	25.61	24.62	13.16
Merged-chr14-51166276-3	chr14	51166136	51166336	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3976.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	14.94	26.66	22.25	45.85	17.18	31.04	20.59	29.61	38.16	27.62	29.14	15.98
Merged-chr8-82403220-3	chr8	82403113	82403313	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-627.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	26.65	18.11	17.11	31.37	11.86	18.19	13.62	25.09	19.08	28.12	27.13	10.65
Merged-chr8-25099688-3	chr8	25099596	25099796	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2115.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	25.04	20.63	23.96	16.49	22.09	22.26	10.3	23.89	18.88	14.56	23.62	10.96
Merged-chr15-8635613-3	chr15	8635529	8635729	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	22.21	18.86	17.68	11.26	14.32	27.59	11.96	7.99	33.83	34.14	41.71	11.59
Merged-chr7-126780156-3	chr7	126780088	126780288	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026875, exon 5 of 5)	3' UTR (NM_026875, exon 5 of 5)	-1295.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	12.52	21.88	6.28	15.69	21.27	26.65	14.62	13.71	31.86	17.07	21.1	11.9
Merged-chr16-37869787-3	chr16	37869653	37869853	+	991.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1353.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	23.02	16.35	15.97	12.47	17.59	15.68	12.29	15.7	24.78	15.57	17.59	10.65
Merged-chr12-3843643-3	chr12	3843516	3843716	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	18628.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	14.94	6.29	29.66	14.08	15.96	20.38	21.59	23.41	18.88	20.59	16.58	15.66
Merged-chr3-90267289-3	chr3	90267189	90267389	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201407, intron 1 of 27)	intron (NM_201407, intron 1 of 27)	775.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	15.34	15.09	16.54	16.89	13.91	19.13	14.62	17.47	28.13	34.65	26.63	20.36
Merged-chr10-79555098-3	chr10	79554993	79555193	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027422)	promoter-TSS (NM_027422)	35.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	18.57	26.91	16.54	26.14	28.64	27.28	12.29	22.71	27.93	29.12	32.66	17.54
Merged-chr13-51639049-3	chr13	51638897	51639097	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-6235.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	18.57	11.82	15.97	14.48	8.59	17.25	16.28	4.12	22.82	19.08	21.61	15.66
Merged-chr7-35683989-3	chr7	35683887	35684087	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36505.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	14.94	20.88	21.68	24.94	18.82	24.77	14.28	31.79	20.46	4.52	38.69	14.41
Merged-chr5-62761455-3	chr5	62761377	62761577	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	4700.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	12.11	13.08	14.83	26.14	22.91	29.79	23.58	23.92	22.03	22.59	29.14	16.92
Merged-chr9-77921115-3	chr9	77921017	77921217	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	3752.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	18.17	18.11	14.83	6.03	13.5	19.76	5.98	15.0	29.7	10.04	30.65	22.24
Merged-chr13-33935801-4	chr13	33935678	33935878	+	991.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040707)	promoter-TSS (NR_040707)	-254.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	14.13	11.57	17.68	18.5	21.27	12.54	12.95	11.3	37.37	25.11	47.74	30.07
Merged-chr5-96854660-2	chr5	96854565	96854765	+	991.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61280.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	14.94	10.31	16.54	18.1	18.82	29.79	18.93	24.06	1.77	0.0	5.53	0.31
Merged-chr15-99724580-3	chr15	99724520	99724720	+	991.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-146.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	15.34	19.62	34.8	12.87	14.73	16.31	10.3	11.16	28.91	22.09	31.15	15.66
Merged-chr2-6451404-3	chr2	6451298	6451498	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98662.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	18.17	9.56	18.25	18.5	16.36	36.06	20.93	32.52	39.73	17.07	43.21	15.66
Merged-chr6-91705749-3	chr6	91705655	91705855	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	21688.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	44.42	73.7	33.09	10.46	22.91	100.03	22.26	12.53	61.17	71.3	42.71	15.66
Merged-chr10-26792006-3	chr10	26791906	26792106	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	19494.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	11.71	10.56	17.11	25.74	23.73	32.3	28.23	37.96	30.88	7.03	25.63	11.28
Merged-chr3-107038329-3	chr3	107038211	107038411	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008418)	TTS (NM_008418)	-1193.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	13.33	14.34	14.83	15.28	21.27	17.56	13.29	21.93	26.75	9.04	17.59	13.78
Merged-chr7-19361948-3	chr7	19361864	19362064	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	748.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	32.3	20.37	26.24	11.66	25.77	31.36	9.3	11.1	44.84	28.12	35.68	16.29
Merged-chr10-94464967-3	chr10	94464873	94465073	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	ID_B1|SINE|B4	-49884.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	14.54	17.86	21.11	16.49	18.0	16.93	22.26	34.21	22.62	26.11	36.68	18.48
Merged-chr8-104570617-3	chr8	104570524	104570724	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20844.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	29.07	20.12	32.52	12.87	14.32	29.16	11.96	25.37	30.29	20.08	34.17	18.8
Merged-chr7-59163427-3	chr7	59163326	59163526	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65324.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	12.92	14.59	39.93	21.72	11.45	14.74	19.6	36.0	31.08	19.08	31.15	12.53
Merged-chr15-6087396-3	chr15	6087298	6087498	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-42694.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	16.56	13.08	21.68	28.56	25.77	12.86	13.62	26.55	25.18	14.06	25.12	22.56
Merged-chr15-103361533-3	chr15	103361418	103361618	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	5273.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	45.63	28.93	19.4	36.6	46.23	34.18	15.61	22.79	32.85	35.65	35.68	14.41
Merged-chr7-100176494-3	chr7	100176396	100176596	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190869)	promoter-TSS (NM_001190869)	-174.0	NM_001190869	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	24.63	16.35	21.68	28.15	20.46	17.25	11.96	25.93	19.47	8.03	18.59	10.96
Merged-chr8-106936137-2	chr8	106936029	106936229	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009229, exon 1 of 7)	exon (NM_009229, exon 1 of 7)	379.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	9.69	15.59	11.41	8.85	16.36	10.66	11.96	12.67	14.75	14.56	12.56	10.65
Merged-chr2-133552208-3	chr2	133552115	133552315	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007553)	promoter-TSS (NM_007553)	56.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	28.67	27.67	15.97	18.5	36.41	33.55	31.22	23.19	27.34	21.59	22.11	14.41
Merged-chr7-139248746-1	chr7	139248646	139248846	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098636, intron 1 of 2)	CpG	264.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	10.5	14.84	22.25	10.86	8.18	10.66	11.63	9.64	39.93	23.6	20.1	16.92
Merged-chr3-79842321-3	chr3	79842235	79842435	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	327.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	13.73	20.88	7.42	7.64	18.0	21.95	11.63	15.48	32.85	18.08	23.62	14.41
Merged-chr4-137048778-3	chr4	137048652	137048852	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-57.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	29.88	24.65	9.13	20.11	15.96	29.48	15.28	16.51	31.67	37.66	23.11	16.92
Merged-chr10-20723686-1	chr10	20723586	20723786	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1392.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.04	4.53	3.42	6.44	3.68	4.39	12.95	8.69	4.92	3.51	14.07	2.82
Merged-chr11-44390222-4	chr11	44390185	44390385	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9778.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	20.59	23.9	18.25	12.87	16.77	55.82	24.25	13.29	28.13	42.18	38.69	10.65
Merged-chr9-111563471-3	chr9	111563354	111563554	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	124373.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	15.75	10.82	14.83	10.86	20.46	18.81	9.97	19.68	22.62	27.62	19.09	8.14
Merged-chr5-3430698-3	chr5	3430614	3430814	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	86821.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	16.15	18.61	31.95	28.96	28.64	53.62	19.93	11.36	51.34	46.19	53.26	27.88
Merged-chr4-15989047-1	chr4	15988947	15989147	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013752, exon 14 of 16)	exon (NM_013752, exon 14 of 16)	24791.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	11.31	7.04	4.56	2.82	8.18	3.45	4.65	8.41	6.1	5.52	1.0	5.01
Merged-chr3-153262882-3	chr3	153262759	153262959	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	MTEa|LTR|ERVL-MaLR	35790.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	14.94	9.56	21.11	29.36	17.59	23.2	29.56	30.93	27.93	14.06	27.13	20.68
Merged-chr10-67960165-1	chr10	67960065	67960265	+	991.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	13543.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.28	16.33	29.62	20.1	17.86
Merged-chr8-40512626-1	chr8	40512526	40512726	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	843.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	4.04	4.78	9.13	4.42	12.27	11.6	3.32	9.56	11.41	4.02	11.05	7.83
Merged-chr7-72306556-2	chr7	72306463	72306663	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	32.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	12.52	9.06	18.83	16.89	22.5	8.78	15.94	11.61	1.97	6.03	0.5	3.45
Merged-chr5-36515353-3	chr5	36515237	36515437	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	15286.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	70.26	48.8	89.56	93.71	78.14	87.17	71.42	97.79	26.36	17.07	35.17	28.19
Merged-chr10-79669144-4	chr10	79669066	79669266	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148934)	promoter-TSS (NM_148934)	-244.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	15.75	12.83	11.98	10.05	12.68	15.68	7.97	10.29	21.05	26.11	33.67	15.66
Merged-chr18-46184909-3	chr18	46184815	46185015	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178872, intron 4 of 9)	MTD|LTR|ERVL-MaLR	13903.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	23.02	16.85	21.68	39.01	38.05	21.95	14.95	27.28	19.47	16.07	42.71	16.92
Merged-chr14-57798707-2	chr14	57798609	57798809	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_037238)	TTS (NR_037238)	285.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	12.11	14.59	6.28	11.66	13.5	9.09	16.94	14.94	17.51	21.59	20.1	15.04
Merged-chr4-139193862-3	chr4	139193778	139193978	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	-233.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	23.42	16.6	26.81	23.73	11.05	21.32	24.91	16.77	32.85	34.65	54.27	26.0
Merged-chr15-82898926-3	chr15	82898823	82899023	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027799)	promoter-TSS (NR_027799)	-157.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	12.11	27.17	19.4	12.87	18.0	10.98	12.95	21.28	19.87	14.56	16.58	11.9
Merged-chr1-151338418-3	chr1	151338315	151338515	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6071.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	18.17	13.08	18.25	23.33	19.23	15.05	12.29	15.17	19.67	14.06	27.13	15.35
Merged-chr6-83475700-3	chr6	83475581	83475781	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19289.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	30.28	13.08	21.68	25.74	29.86	21.01	15.94	35.41	13.37	20.08	21.61	17.23
Merged-chr9-104408724-3	chr9	104408648	104408848	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17365.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	12.92	15.85	26.24	8.45	11.45	13.48	15.61	10.51	13.96	9.04	15.58	14.1
Merged-chr14-50865152-3	chr14	50865070	50865270	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 4 of 54)	intron (NM_009351, intron 4 of 54)	5384.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	18.17	11.07	29.66	25.34	12.68	12.86	11.63	15.2	25.57	16.57	28.14	18.48
Merged-chr13-102906083-3	chr13	102906017	102906217	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	145862.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	19.79	15.09	15.4	13.27	21.27	20.07	15.28	18.45	18.29	11.55	33.16	16.92
Merged-chr7-73527417-3	chr7	73527331	73527531	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	14315.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	29.48	24.15	29.09	13.67	32.73	27.59	19.93	34.18	40.71	41.17	42.21	29.13
Merged-chr5-100639137-3	chr5	100639024	100639224	+	990.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35132.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	22.21	21.88	28.52	23.33	18.82	7.21	16.61	10.82	32.65	26.11	22.61	20.05
Merged-chr1-78702538-2	chr1	78702431	78702631	+	990.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033606, intron 12 of 14)	RMER15|LTR|ERVL	44091.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	29.07	11.32	53.05	34.99	47.46	32.3	37.54	64.32	6.29	4.02	20.6	3.45
Merged-chr5-32112717-2	chr5	32112618	32112818	+	990.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23754.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.67	5.28	5.13	4.02	13.91	18.81	8.3	9.28	42.88	48.2	62.31	28.51
Merged-chr4-141676663-2	chr4	141676510	141676710	+	990.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9106.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	4.85	6.29	4.56	5.63	11.45	9.41	9.3	6.76	18.1	17.07	19.6	10.65
Merged-chr14-33175325-3	chr14	33175241	33175441	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	9725.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	21.4	24.65	37.65	12.47	22.91	40.45	21.26	29.52	43.27	32.13	21.61	38.85
Merged-chr3-95283041-3	chr3	95282940	95283140	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173347)	promoter-TSS (NM_173347)	105.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	18.57	10.56	27.95	15.28	18.0	23.52	16.94	22.32	21.44	17.07	32.66	17.54
Merged-chr13-47193893-3	chr13	47193792	47193992	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170643)	promoter-TSS (NM_001170643)	-111.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	37.55	38.23	39.93	41.02	43.36	37.32	22.59	56.33	16.33	17.57	17.59	11.28
Merged-chr4-141643712-3	chr4	141643609	141643809	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	-19875.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	29.48	10.82	33.09	37.4	24.14	30.73	24.91	28.46	47.8	28.12	35.17	42.6
Merged-chr7-98716201-3	chr7	98716096	98716296	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028410, exon 5 of 5)	exon (NM_028410, exon 5 of 5)	12949.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	16.56	14.84	16.54	5.23	25.36	37.32	25.91	21.08	49.57	18.08	43.21	23.18
Merged-chr9-106310053-3	chr9	106309957	106310157	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	28996.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	53.7	27.17	61.61	54.7	40.91	32.93	23.58	51.25	21.64	14.56	24.62	13.47
Merged-chr1-182378592-3	chr1	182378487	182378687	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30580.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	21.0	18.11	21.11	10.46	14.32	21.64	16.94	14.24	26.36	20.59	17.59	18.48
Merged-chr7-139131677-3	chr7	139131538	139131738	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	45637.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	9.69	12.58	19.4	20.91	13.91	13.8	8.64	11.64	12.59	12.05	11.56	6.58
Merged-chr15-53474334-3	chr15	53474223	53474423	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128140.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	14.94	12.32	33.66	24.13	28.23	15.05	24.58	37.21	35.21	22.09	47.23	20.99
Merged-chr11-45699042-3	chr11	45698944	45699144	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A2|LTR|ERVL	-109039.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	14.94	18.11	27.38	20.51	13.91	18.81	9.3	18.28	16.72	18.08	34.67	17.54
Merged-chr10-59266276-3	chr10	59266188	59266388	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	44366.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	16.56	18.86	20.54	15.28	20.46	28.22	9.63	18.95	27.73	28.12	22.61	13.78
Merged-chr12-3745622-3	chr12	3745525	3745725	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	45.63	34.21	26.81	44.64	29.46	36.37	16.61	31.04	32.45	19.58	25.63	11.28
Merged-chr1-33878354-3	chr1	33878242	33878442	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310484, exon 2 of 6)	exon (NM_001310484, exon 2 of 6)	29279.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	29.48	21.63	21.11	24.53	18.0	10.98	11.29	12.25	30.29	37.16	29.65	13.78
Merged-chr15-59525937-3	chr15	59525822	59526022	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-122732.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	23.42	17.86	30.23	16.89	15.96	16.93	17.61	12.0	12.98	23.1	18.59	20.68
Merged-chr6-124894218-3	chr6	124894130	124894330	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6030.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	18.57	13.83	19.4	14.88	33.14	27.28	30.23	14.19	29.11	29.12	25.63	27.88
Merged-chr10-81997371-3	chr10	81997263	81997463	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-50760.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	27.46	25.91	36.51	32.58	15.55	29.16	11.96	16.12	35.6	31.13	31.15	23.81
Merged-chr4-8915745-3	chr4	8915657	8915857	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	164433.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	14.13	13.58	38.79	32.58	28.64	13.8	16.28	35.3	30.68	28.62	47.23	28.51
Merged-chr14-73173861-3	chr14	73173766	73173966	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31081.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	20.59	13.58	21.11	17.7	28.23	19.44	30.89	46.35	32.85	15.06	18.09	12.84
Merged-chr8-40994086-3	chr8	40993963	40994163	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 13 of 13)	intron (NM_001005863, intron 13 of 13)	-23405.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	22.61	35.72	28.52	35.8	42.14	46.1	30.56	39.84	15.54	16.07	22.61	20.36
Merged-chr18-10532548-3	chr18	10532445	10532645	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	77807.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	17.77	10.82	12.55	18.5	18.82	19.13	11.96	26.05	24.0	24.1	32.66	15.98
Merged-chr9-42908896-3	chr9	42908793	42908993	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	35478.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	33.92	45.02	118.65	116.24	52.37	19.44	70.09	88.49	41.5	16.07	65.83	28.82
Merged-chr15-27215917-2	chr15	27215808	27216008	+	990.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250769.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	2.42	3.52	0.0	4.83	13.91	15.05	11.29	25.65	24.39	20.08	24.62	11.9
Merged-chr2-163932355-2	chr2	163932258	163932458	+	990.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13675.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	19.38	4.02	17.11	14.48	19.23	12.54	22.92	33.08	5.51	6.53	11.56	2.82
Merged-chr17-29094649-4	chr17	29094574	29094774	+	990.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007669, intron 1 of 2)	CpG	905.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	19.38	15.85	18.25	12.47	36.82	23.52	11.96	17.58	18.69	20.59	13.57	16.6
Merged-chr19-10290519-4	chr19	10290434	10290634	+	990.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	14343.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	18.98	24.15	29.66	15.69	22.5	29.79	14.95	21.06	25.37	36.65	20.6	15.04
Merged-chr17-43089727-3	chr17	43089633	43089833	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178589)	TTS (NM_178589)	68558.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	82.37	54.58	78.15	70.38	67.5	51.43	49.49	78.56	30.09	16.57	49.24	16.92
Merged-chr14-121929104-3	chr14	121929008	121929208	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13334.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	29.48	41.25	37.65	41.83	62.18	39.51	21.59	31.57	17.11	15.06	19.09	12.22
Merged-chr15-59614387-3	chr15	59614284	59614484	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34270.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	24.63	26.66	33.66	25.74	17.59	29.16	9.97	19.54	25.96	20.08	30.65	22.87
Merged-chr12-84188437-3	chr12	84188339	84188539	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	5576.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	31.9	25.4	16.54	13.67	34.77	34.81	19.93	23.24	37.17	35.15	29.65	17.86
Merged-chr1-161560549-3	chr1	161560462	161560662	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	65905.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	19.38	13.83	27.38	31.37	18.41	17.87	24.91	36.17	26.95	13.05	19.6	18.17
Merged-chr11-69041078-3	chr11	69040990	69041190	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4547.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	45.63	31.69	29.66	31.77	41.32	42.33	14.62	19.57	40.52	57.24	18.59	38.53
Merged-chr10-34193878-3	chr10	34193773	34193973	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	13678.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	23.82	17.61	21.68	12.47	24.55	39.51	20.26	24.25	33.24	35.15	32.16	18.17
Merged-chr6-88901723-1	chr6	88901623	88901823	+	990.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	-528.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	6.86	7.04	9.13	1.61	13.5	13.48	7.31	8.75	11.21	18.58	9.04	3.45
Merged-chr17-13945423-3	chr17	13945300	13945500	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2973.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	26.65	31.94	34.23	53.09	40.91	19.76	45.51	45.25	32.85	10.04	54.77	26.31
Merged-chr6-50030125-3	chr6	50030022	50030222	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80119.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	23.02	20.37	30.8	16.09	19.23	24.15	20.93	36.56	24.39	14.06	31.66	21.3
Merged-chr2-30829603-3	chr2	30829511	30829711	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1311.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	12.52	23.64	26.81	15.28	15.96	30.42	21.92	12.11	25.18	26.61	34.67	16.6
Merged-chr10-69321460-3	chr10	69321414	69321614	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31398.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	14.94	10.06	7.99	20.51	13.5	24.46	11.63	20.24	16.52	16.57	16.58	10.96
Merged-chr9-95575118-3	chr9	95575013	95575213	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15296.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	15.75	9.31	20.54	12.07	13.91	29.79	27.9	33.08	25.96	15.06	21.1	13.47
Merged-chr16-3894936-3	chr16	3894850	3895050	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153801)	TTS (NR_153801)	10331.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	27.46	15.34	18.83	21.32	20.86	17.25	35.21	36.42	20.26	12.55	27.64	16.92
Merged-chr12-112795921-1	chr12	112795821	112796021	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13054.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	16.56	21.88	14.83	21.32	4.09	0.31	1.33	0.34	1.38	2.51	1.51	1.88
Merged-chr17-21535486-3	chr17	21535387	21535587	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-52.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	14.13	14.34	14.83	24.53	14.73	16.62	16.28	23.05	23.6	15.06	25.12	19.42
Merged-chr10-123112948-3	chr10	123112842	123113042	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027604, exon 22 of 22)	3' UTR (NM_027604, exon 22 of 22)	-36437.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	23.02	19.12	17.68	28.56	26.59	27.91	15.28	35.89	16.52	18.58	43.21	22.56
Merged-chr2-118597768-3	chr2	118597669	118597869	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-442.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	16.15	12.58	18.83	15.69	24.55	23.83	11.29	21.62	36.19	31.63	49.24	25.06
Merged-chr7-128411161-3	chr7	128411047	128411247	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7025.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	27.05	34.46	33.66	26.14	23.73	21.95	15.28	14.83	14.55	23.1	16.58	15.04
Merged-chr7-45454844-8	chr7	45454771	45454971	+	990.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030678, exon 15 of 16)	exon (NM_030678, exon 15 of 16)	5015.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	16.15	22.39	34.8	32.18	20.05	26.65	22.26	20.89	37.17	31.13	23.11	29.13
Merged-chr4-120925839-3	chr4	120925660	120925860	+	990.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-755.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	16.96	14.84	14.26	20.51	15.55	19.44	13.62	10.91	12.98	25.61	13.06	11.59
Merged-chr13-34046583-3	chr13	34046471	34046671	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 2 of 6)	intron (NM_026512, intron 2 of 6)	8930.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	24.23	10.31	6.28	8.04	18.0	17.87	9.3	11.69	15.93	23.1	23.11	7.21
Merged-chr19-41331810-3	chr19	41331714	41331914	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	53256.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	22.21	10.56	20.54	18.9	18.82	28.54	11.63	29.52	13.57	16.07	17.08	10.96
Merged-chr1-149831281-3	chr1	149831191	149831391	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	91148.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	21.4	39.74	22.82	21.72	9.0	18.81	5.65	15.03	51.93	43.68	40.7	20.05
Merged-chr12-34696951-3	chr12	34696837	34697037	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-168048.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	13.33	12.58	27.38	19.31	24.14	18.19	14.28	20.22	21.24	21.59	17.08	9.08
Merged-chr12-55499219-3	chr12	55499091	55499291	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6544.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	19.79	19.87	15.4	11.66	25.77	30.42	13.95	19.77	32.26	44.19	24.12	11.28
Merged-chr11-8579523-3	chr11	8579432	8579632	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	85003.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	12.52	19.12	19.97	19.71	22.91	29.16	17.27	16.09	30.29	29.62	20.1	9.4
Merged-chr3-126610087-3	chr3	126609971	126610171	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	13120.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	18.98	17.86	19.97	22.12	21.68	18.19	11.96	25.49	18.88	14.06	27.64	13.78
Merged-chr19-4755787-3	chr19	4755671	4755871	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-754.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	31.09	17.61	14.26	7.24	27.0	23.2	10.3	13.35	32.45	28.62	33.16	5.95
Merged-chr7-45526888-2	chr7	45526773	45526973	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008654)	promoter-TSS (NM_008654)	543.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	15.34	17.36	15.4	12.07	19.64	12.86	13.29	9.62	21.64	10.54	20.6	17.23
Merged-chr14-25458544-1	chr14	25458444	25458644	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	-641.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.44	3.52	1.14	2.41	6.14	6.9	3.99	4.07	2.75	9.04	3.01	3.45
Merged-chr1-36436785-3	chr1	36436696	36436896	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310517, intron 4 of 8)	L1MB7|LINE|L1	8475.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	21.0	22.89	36.51	47.86	25.36	20.07	59.79	50.86	15.34	23.1	29.65	17.54
Merged-chr18-9213535-2	chr18	9213449	9213649	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008058, exon 1 of 1)	exon (NM_008058, exon 1 of 1)	693.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	14.54	6.79	7.42	10.86	13.91	14.42	17.61	14.97	2.16	8.03	6.53	3.45
Merged-chr11-99449852-3	chr11	99449758	99449958	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11705.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	14.54	14.34	25.1	15.28	24.14	13.48	16.61	26.55	28.91	24.1	30.65	19.42
Merged-chrX-8145325-3	chrX	8145220	8145420	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033561)	promoter-TSS (NR_033561)	-107.0	NR_033561	70226.0	Mm.391639	NR_033561	ENSMUSG00000055188	Rbm3os	2900002K06Rik	RNA binding motif protein 3, opposite strand	ncRNA	36.75	37.23	29.09	19.71	24.55	35.75	23.25	33.28	50.75	56.24	41.71	25.69
Merged-chr5-96793435-3	chr5	96793349	96793549	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	64.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	9.69	18.61	31.95	26.55	25.36	18.81	23.58	20.38	19.28	32.64	22.61	16.29
Merged-chr11-103101621-3	chr11	103101522	103101722	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025988)	promoter-TSS (NM_025988)	36.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	12.92	20.63	11.98	13.67	20.86	25.09	31.89	22.77	28.32	17.57	19.6	17.23
Merged-chr4-88727440-3	chr4	88727344	88727544	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4936.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	23.02	20.37	15.4	29.76	28.64	24.77	36.87	37.68	31.67	23.1	25.12	16.92
Merged-chr7-64341914-2	chr7	64341810	64342010	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	32185.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.81	6.04	3.42	24.53	10.64	3.14	20.93	21.25	14.75	18.58	24.12	13.16
Merged-chr8-84068835-3	chr8	84068730	84068930	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1994.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	12.52	10.82	29.66	19.71	19.64	24.77	9.3	26.24	25.57	24.1	27.13	15.66
Merged-chr10-111156623-1	chr10	111156523	111156723	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8179.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	15.34	5.28	4.56	5.23	14.32	16.31	13.62	16.01	4.72	2.51	8.54	8.77
Merged-chr5-67297216-3	chr5	67297098	67297298	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9757.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	15.75	15.09	27.38	32.18	16.36	20.38	13.29	27.59	27.34	13.56	35.68	17.23
Merged-chr1-62701213-3	chr1	62701123	62701323	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2094.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	24.63	32.95	27.95	20.11	17.18	29.79	17.61	22.09	27.34	13.56	39.7	17.86
Merged-chr10-77974901-3	chr10	77974818	77975018	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3732.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	20.59	22.13	29.66	16.49	24.14	23.52	13.62	13.15	29.9	29.62	23.62	11.59
Merged-chr15-35152717-3	chr15	35152613	35152813	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	3093.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	18.17	21.88	35.37	26.95	25.77	14.74	18.93	42.42	23.41	13.05	24.12	13.78
Merged-chr13-54303483-3	chr13	54303383	54303583	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67866.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	17.36	18.61	7.99	22.12	15.55	12.23	9.3	13.93	27.73	23.6	28.64	10.02
Merged-chr3-54681765-3	chr3	54681659	54681859	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-11056.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	19.79	12.83	21.11	18.5	17.59	19.13	17.61	21.98	21.83	24.6	27.64	12.22
Merged-chr19-7218183-3	chr19	7218100	7218300	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-584.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	21.8	27.67	19.4	21.72	18.82	20.38	11.63	14.24	20.65	22.59	17.59	15.35
Merged-chr13-54611169-4	chr13	54611058	54611258	+	990.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347512, exon 1 of 6)	exon (NM_001347512, exon 1 of 6)	215.0	NM_028870	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	17.36	16.6	11.98	18.1	23.32	15.99	20.26	12.17	19.47	17.07	17.08	10.02
Merged-chr4-137465335-2	chr4	137465218	137465418	+	990.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3485.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	2.02	1.01	1.14	2.01	14.32	24.15	12.29	21.56	28.91	17.07	26.13	15.98
Merged-chr11-3151451-2	chr11	3151358	3151558	+	990.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	B1F|SINE|Alu	27437.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	13.73	17.86	16.54	12.07	21.27	15.37	10.3	22.54	0.0	0.0	0.0	0.0
Merged-chr5-120513022-3	chr5	120512918	120513118	+	990.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	1826.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	11.31	21.63	34.23	15.69	23.73	51.11	43.85	51.17	68.05	42.68	50.25	28.51
Merged-chr3-108086737-3	chr3	108086632	108086832	+	990.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028779)	promoter-TSS (NM_028779)	-66.0	NM_001289719	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	25.04	21.88	28.52	16.09	33.55	46.72	21.26	36.36	42.68	49.71	45.22	14.41
Merged-chr10-79877346-3	chr10	79877231	79877431	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2336.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	16.56	8.3	21.68	12.47	23.32	19.44	24.25	22.54	26.16	29.12	26.13	18.48
Merged-chr11-44417593-3	chr11	44417502	44417702	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17539.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	12.11	17.61	21.68	15.69	36.82	26.65	21.26	32.72	41.89	48.7	48.24	34.15
Merged-chr6-8339667-3	chr6	8339569	8339769	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	80381.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	13.73	14.59	27.95	22.52	22.5	25.71	24.91	45.87	23.8	19.08	18.59	22.87
Merged-chr14-25505424-3	chr14	25505342	25505542	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-28997.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	26.65	11.57	22.82	12.47	38.46	40.45	24.25	54.39	17.51	8.54	19.6	15.04
Merged-chr11-76497903-3	chr11	76497816	76498016	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3421.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	36.34	42.01	21.68	12.47	47.05	93.13	22.26	18.25	39.34	67.78	38.19	13.78
Merged-chr11-63151935-4	chr11	63151822	63152022	+	990.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302255, intron 4 of 4)	intron (NM_001302255, intron 4 of 4)	19119.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	12.92	13.83	4.56	14.88	10.64	18.19	9.97	13.96	17.51	19.08	12.56	7.21
Merged-chr3-52090357-4	chr3	52090201	52090401	+	990.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	14705.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	16.15	15.09	15.4	8.04	13.91	22.26	12.29	11.61	23.41	28.12	16.58	20.99
Merged-chr2-92478502-2	chr2	92478402	92478602	+	990.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-17984.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.86	4.02	5.7	8.85	21.68	36.06	17.94	23.27	31.86	35.65	29.65	12.53
Merged-chr8-16427633-3	chr8	16427539	16427739	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053171, intron 7 of 69)	ORR1E|LTR|ERVL-MaLR	-258801.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	18.57	11.07	21.11	27.35	20.46	26.34	19.6	25.74	17.11	21.59	18.59	13.47
Merged-chr2-122631108-3	chr2	122631049	122631249	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033256, exon 1 of 2)	exon (NM_001033256, exon 1 of 2)	524.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	8.88	21.13	9.7	12.87	16.77	25.09	21.26	16.21	27.34	45.69	28.14	26.0
Merged-chr8-108714386-3	chr8	108714276	108714476	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007496)	promoter-TSS (NM_007496)	-268.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	11.71	12.83	28.52	10.86	6.55	13.17	11.63	14.38	13.18	4.02	14.57	5.64
Merged-chr5-25084015-1	chr5	25083915	25084115	+	990.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	16627.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.42	1.01	4.56	2.82	22.5	16.31	10.96	33.06	5.11	6.53	8.54	6.27
Merged-chr16-57569175-3	chr16	57569087	57569287	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	MIR|SINE|MIR	19945.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	37.55	26.66	28.52	15.69	50.32	56.76	23.92	27.73	56.25	51.21	48.24	19.74
Merged-chr16-11676183-3	chr16	11676086	11676286	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-103516.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	33.52	19.62	23.96	14.08	28.64	15.05	12.62	22.93	82.61	43.68	47.23	46.05
Merged-chr17-35870847-3	chr17	35870734	35870934	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4219.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	22.21	12.83	9.7	10.46	19.64	19.44	11.96	12.95	23.8	20.08	27.13	23.18
Merged-chr6-85588738-3	chr6	85588640	85588840	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	1209.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	24.23	16.1	25.67	36.2	14.32	16.93	10.3	30.53	33.44	25.11	23.62	31.01
Merged-chr12-80814042-3	chr12	80813948	80814148	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	23516.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	19.79	20.63	23.96	17.7	25.77	36.06	23.25	17.83	33.83	31.63	36.68	15.35
Merged-chr11-43383781-3	chr11	43383683	43383883	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9322.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	24.23	22.64	28.52	33.78	21.68	42.02	18.93	9.7	50.75	42.68	44.72	15.04
Merged-chr5-31887755-3	chr5	31887647	31887847	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	189697.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	17.77	20.37	43.93	34.59	35.18	14.11	15.28	21.81	26.75	24.6	29.65	20.36
Merged-chr5-114722169-3	chr5	114722075	114722275	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029992, exon 13 of 13)	3' UTR (NM_029992, exon 13 of 13)	2660.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	25.04	20.63	25.67	28.96	20.86	23.83	15.28	23.3	19.87	16.07	31.15	17.86
Merged-chr11-103159185-3	chr11	103159078	103159278	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11960.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	29.07	8.05	6.85	8.85	18.0	17.25	5.98	13.99	25.96	29.62	26.63	12.53
Merged-chr19-5815243-3	chr19	5815135	5815335	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12563.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	15.75	20.37	14.83	21.32	46.23	45.78	39.86	47.07	31.08	44.19	29.14	12.22
Merged-chrX-103555251-3	chrX	103555132	103555332	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9732.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	22.21	21.63	31.95	39.82	17.59	19.13	20.59	27.36	23.21	14.06	35.68	17.86
Merged-chr18-62092758-3	chr18	62092673	62092873	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87208.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	23.42	32.7	55.33	31.77	30.68	23.83	20.26	21.42	27.54	30.63	20.1	10.02
Merged-chr11-101952910-3	chr11	101952819	101953019	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045806, intron 1 of 3)	intron (NR_045806, intron 1 of 3)	498.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	35.94	17.1	46.21	25.34	26.59	27.28	8.97	34.88	25.96	16.07	40.2	14.72
Merged-chr6-113850031-3	chr6	113849933	113850133	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	41506.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	18.98	10.56	21.68	20.91	14.73	14.74	14.62	19.4	18.49	7.03	15.58	13.16
Merged-chr18-12728997-3	chr18	12728904	12729104	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 9 of 13)	intron (NM_028341, intron 9 of 13)	-12351.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	16.96	21.13	19.4	17.7	12.27	20.07	30.56	28.04	47.8	42.18	57.28	48.56
Merged-chr1-87652849-3	chr1	87652750	87652950	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32538.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	14.13	11.82	24.53	25.74	12.68	26.03	19.6	18.42	21.44	20.08	26.13	16.6
Merged-chr12-38844208-3	chr12	38844102	38844302	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	60491.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	14.94	13.33	23.96	44.64	27.0	17.56	21.92	46.68	21.64	22.09	30.15	14.72
Merged-chr5-105698852-3	chr5	105698792	105698992	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1077.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	23.42	11.32	25.67	23.73	32.73	24.46	17.27	37.43	11.8	11.55	32.66	10.02
Merged-chr9-123940829-3	chr9	123940729	123940929	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	27863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	27.05	41.75	14.26	21.72	13.09	28.22	14.28	16.88	26.16	23.6	27.64	16.92
Merged-chr5-93206018-3	chr5	93205938	93206138	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029363)	promoter-TSS (NM_029363)	457.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	15.34	11.82	17.68	12.47	15.96	24.77	15.61	14.44	29.31	23.6	30.65	25.06
Merged-chr6-82753740-2	chr6	82753655	82753855	+	990.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	20699.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.63	9.56	3.99	6.03	2.45	14.74	9.63	8.36	14.55	8.03	24.12	6.58
Merged-chr19-9122618-3	chr19	9122531	9122731	+	990.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12935.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	59.36	33.2	63.89	39.01	44.18	66.79	44.84	31.23	37.37	24.1	42.71	10.34
Merged-chr12-16878782-2	chr12	16878673	16878873	+	990.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16205.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	23.42	9.56	24.53	24.13	55.23	37.0	22.26	37.85	6.29	4.52	3.52	0.31
Merged-chr9-71805849-3	chr9	71805768	71805968	+	990.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34266.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	16.96	9.56	20.54	7.24	20.86	23.2	30.56	21.87	26.16	30.63	40.2	9.08
Merged-chr8-125600199-3	chr8	125600092	125600292	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015535, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	15554.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	11.71	18.86	23.39	20.91	19.23	21.32	16.94	18.42	34.22	32.13	56.28	27.57
Merged-chr1-191087120-3	chr1	191087011	191087211	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11303.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	22.61	17.36	19.97	12.87	18.41	18.81	17.27	10.71	17.11	17.57	23.11	11.9
Merged-chr16-21636347-3	chr16	21636253	21636453	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	58312.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	22.21	21.88	31.95	13.27	40.91	55.82	44.18	58.54	53.11	48.7	84.42	23.81
Merged-chr17-28407657-3	chr17	28407573	28407773	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42457.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	14.13	9.56	23.39	19.71	33.96	26.03	21.59	30.14	18.49	22.59	27.64	22.24
Merged-chr18-58563766-3	chr18	58563670	58563870	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	7530.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	22.21	19.12	28.52	19.31	26.59	37.0	24.91	36.87	32.45	21.59	17.59	15.04
Merged-chr5-93268994-3	chr5	93268897	93269097	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007635, intron 2 of 7)	intron (NM_007635, intron 2 of 7)	1424.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	45.23	40.24	23.39	9.65	33.96	73.06	32.55	18.5	40.71	50.21	42.71	14.72
Merged-chr16-91789924-3	chr16	91789802	91790002	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 4 of 15)	ORR1D2|LTR|ERVL-MaLR	60531.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	23.02	16.85	23.39	13.67	19.23	16.93	9.97	27.93	23.41	14.06	16.08	11.9
Merged-chr7-82688883-2	chr7	82688776	82688976	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175317, intron 12 of 19)	RMER17C|LTR|ERVK	40262.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	12.92	12.83	17.68	19.71	15.14	3.45	10.3	21.62	7.87	6.53	14.07	12.22
Merged-chr9-78521107-3	chr9	78521022	78521222	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39398.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	12.52	13.33	14.83	22.93	30.68	21.01	13.95	28.79	32.65	16.57	22.61	15.04
Merged-chr2-131180151-3	chr2	131180035	131180235	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007682)	promoter-TSS (NM_007682)	-68.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	24.23	19.62	14.26	8.04	21.68	29.16	16.28	27.39	37.37	27.62	60.3	20.99
Merged-chr1-74237906-3	chr1	74237809	74238009	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1392.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	26.65	12.32	21.68	18.1	22.09	22.89	27.9	21.87	36.98	25.11	36.68	22.56
Merged-chr2-24335475-3	chr2	24335383	24335583	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1377.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	29.48	18.61	29.09	19.31	22.91	52.68	24.58	11.92	39.53	37.66	47.23	11.28
Merged-chr5-107749770-1	chr5	107749670	107749870	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-23965.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	3.63	1.01	1.71	3.62	5.32	15.68	7.31	13.74	2.56	2.01	4.02	1.25
Merged-chr7-30654629-1	chr7	30654529	30654729	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027999, intron 17 of 18)	intron (NM_027999, intron 17 of 18)	-4401.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	16.56	28.67	27.38	5.63	6.14	7.21	2.99	3.84	8.85	1.51	1.0	3.45
Merged-chr1-87555207-3	chr1	87555095	87555295	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111314, intron 1 of 14)	MTE2a|LTR|ERVL-MaLR	18675.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	15.75	23.39	52.48	48.67	23.32	22.26	21.59	27.08	39.53	14.06	43.72	20.99
Merged-chr14-26442797-3	chr14	26442636	26442836	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347494, intron 10 of 19)	intron (NM_001347494, intron 10 of 19)	85189.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	9.29	7.55	14.83	15.28	17.59	27.91	11.63	21.17	17.7	20.59	30.15	11.59
Merged-chr13-48645207-3	chr13	48645109	48645309	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17827.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	20.59	3.77	34.8	20.51	15.14	13.8	18.93	31.09	18.1	8.54	34.17	15.98
Merged-chr8-94876378-3	chr8	94876285	94876485	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053246)	promoter-TSS (NM_053246)	-73.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	21.4	17.1	13.12	23.73	24.14	21.01	16.94	19.68	37.96	30.63	20.1	15.35
Merged-chr4-8690657-3	chr4	8690592	8690792	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001277149, exon 1 of 38)	5' UTR (NM_001277149, exon 1 of 38)	286.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	18.98	22.39	13.69	16.09	18.41	18.5	11.96	11.78	19.08	15.57	15.58	18.17
Merged-chr5-124862989-1	chr5	124862889	124863089	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	284.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	5.65	5.79	5.7	3.22	6.95	5.96	7.64	8.07	4.92	9.54	7.03	10.65
Merged-chrX-159145399-3	chrX	159145295	159145495	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-110387.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	22.61	16.35	11.98	12.87	20.46	21.01	15.94	29.07	22.03	31.63	22.61	10.34
Merged-chr2-126073894-3	chr2	126073802	126074002	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	39244.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	17.36	15.09	29.66	14.08	21.27	26.97	10.96	23.89	32.45	9.04	33.67	28.51
Merged-chr7-45456420-6	chr7	45456242	45456442	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030678, exon 16 of 16)	3' UTR (NM_030678, exon 16 of 16)	3544.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	16.96	12.32	18.25	29.36	11.45	15.37	26.57	24.98	28.52	33.64	42.21	20.68
Merged-chr9-65195760-2	chr9	65195656	65195856	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18934.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	1.62	3.52	0.57	3.22	31.91	18.5	34.88	34.99	16.13	18.58	39.7	28.51
Merged-chr10-4341627-1	chr10	4341527	4341727	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	45848.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	6.46	3.52	3.42	6.03	13.09	16.93	4.65	16.49	6.49	10.54	12.56	6.89
Merged-chr5-97345323-3	chr5	97345222	97345422	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	47008.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	11.31	17.86	19.4	16.09	11.45	21.64	18.6	29.1	20.85	34.65	46.73	17.54
Merged-chr12-55569901-3	chr12	55569800	55570000	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4695.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	16.56	9.81	22.25	23.73	13.5	17.87	15.28	27.25	21.05	21.09	27.13	17.54
Merged-chr7-55853551-3	chr7	55853442	55853642	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	L1ME3G|LINE|L1	11471.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	47.24	21.63	39.93	16.89	23.73	21.95	11.96	7.91	40.71	24.6	24.62	15.04
Merged-chr12-85397315-3	chr12	85397244	85397444	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22627.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	11.71	17.36	15.97	15.28	18.82	19.76	15.61	18.42	14.55	16.07	10.05	11.9
Merged-chr15-83171330-3	chr15	83171223	83171423	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	885.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	17.36	9.81	22.25	11.26	17.18	22.58	16.28	11.75	26.55	21.09	39.19	27.25
Merged-chr7-110389066-3	chr7	110388955	110389155	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	167352.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	16.56	9.31	34.23	12.47	15.14	21.01	19.6	18.45	22.82	22.59	23.11	21.93
Merged-chr8-35645585-3	chr8	35645478	35645678	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-56558.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	24.63	10.82	18.83	26.55	17.59	11.92	21.92	37.51	13.57	15.57	23.62	12.22
Merged-chr14-122464057-3	chr14	122463931	122464131	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	1627.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	15.34	12.07	6.28	16.09	17.59	15.68	15.28	10.63	21.24	13.56	18.59	23.18
Merged-chr2-160091239-3	chr2	160091157	160091357	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74604.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	23.82	16.35	20.54	13.67	35.59	35.43	11.29	22.15	19.47	27.11	26.13	7.83
Merged-chr13-102658628-2	chr13	102658524	102658724	+	989.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34923.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	17.77	14.84	18.25	6.84	1.64	1.88	0.66	0.25	18.69	32.13	17.59	11.9
Merged-chr11-118153182-2	chr11	118153088	118153288	+	989.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-23969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	1.62	2.26	19.97	5.23	65.05	67.42	67.76	69.67	18.29	17.07	36.18	10.65
Merged-chr19-12006248-2	chr19	12006090	12006290	+	989.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30550.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.63	7.04	3.99	2.41	6.95	6.27	2.99	5.78	4.52	6.03	8.54	9.4
Merged-chr15-53283187-2	chr15	53283092	53283292	+	989.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	62991.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	17.36	2.77	27.38	6.44	17.59	11.92	12.62	21.28	5.31	8.54	9.04	4.7
Merged-chr18-65680299-3	chr18	65680189	65680389	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-17979.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	14.13	15.34	25.67	14.88	22.09	25.09	13.95	31.71	24.78	14.56	33.16	12.53
Merged-chr17-5797520-3	chr17	5797416	5797616	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1141.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	22.61	23.9	25.1	12.87	21.27	16.62	14.62	33.03	27.54	14.06	17.59	21.62
Merged-chr11-86746237-3	chr11	86746131	86746331	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11336.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	25.04	17.1	16.54	27.35	24.55	25.4	20.93	19.23	40.12	18.58	17.59	12.84
Merged-chr2-26498378-3	chr2	26498266	26498466	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	5456.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	14.54	18.36	14.26	15.28	21.68	27.59	17.61	15.36	24.39	36.65	24.62	15.35
Merged-chr19-23142112-2	chr19	23142003	23142203	+	989.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010638, exon 1 of 2)	exon (NM_010638, exon 1 of 2)	877.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.85	2.52	2.28	16.09	15.55	12.86	15.61	15.25	12.59	23.1	17.08	12.53
Merged-chr3-19474267-2	chr3	19474164	19474364	+	989.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34331.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	19.79	12.83	40.5	43.44	18.0	6.9	29.23	42.03	3.54	8.03	6.03	5.01
Merged-chr12-73876549-3	chr12	73876441	73876641	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24783.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	28.67	21.38	22.25	12.87	18.41	44.21	16.94	13.57	46.62	37.66	23.11	19.74
Merged-chr19-38015744-3	chr19	38015637	38015837	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	27840.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	69.45	45.28	45.64	54.7	81.41	62.09	49.83	64.37	22.62	30.63	34.17	13.47
Merged-chr1-54523912-3	chr1	54523811	54524011	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163314, intron 12 of 26)	intron (NM_001163314, intron 12 of 26)	33773.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	15.75	13.08	17.11	29.36	28.23	33.24	17.27	34.82	37.17	15.06	23.11	14.72
Merged-chrX-52560182-3	chrX	52560073	52560273	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016697, intron 2 of 7)	intron (NM_016697, intron 2 of 7)	-15670.0	NR_045367	100504594.0	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	15.34	19.62	25.1	27.35	24.96	20.7	10.96	26.5	29.31	17.07	19.09	15.04
Merged-chr13-100492531-3	chr13	100492401	100492601	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153794)	promoter-TSS (NR_153794)	-107.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	12.52	15.85	22.82	17.7	13.91	17.25	16.28	10.85	14.95	12.55	21.1	10.65
Merged-chr8-125067548-8	chr8	125067581	125067781	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	13486.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	26.65	33.7	24.53	14.88	14.73	39.2	24.25	19.74	60.19	67.78	52.76	26.94
Merged-chr7-38156023-1	chr7	38155923	38156123	+	989.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-27194.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	1.62	0.5	1.71	1.21	1.23	0.63	0.0	1.63	15.14	16.07	23.11	13.78
Merged-chr11-94653862-3	chr11	94653749	94653949	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177752)	promoter-TSS (NM_177752)	58.0	NM_053161	94064.0	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	16.56	20.88	15.4	22.12	19.23	18.81	11.63	9.14	30.88	26.11	20.1	18.8
Merged-chr17-23998554-3	chr17	23998458	23998658	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-458.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	18.17	18.86	37.65	12.87	20.05	22.26	13.62	19.71	38.94	34.65	19.09	21.3
Merged-chr4-35156317-3	chr4	35156229	35156429	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1155.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	14.54	12.58	26.24	15.28	19.64	27.59	28.23	24.14	20.85	22.59	17.59	6.27
Merged-chr1-70856124-3	chr1	70856038	70856238	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	130423.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	31.9	26.41	25.1	40.62	28.64	20.07	26.91	39.7	17.7	17.57	37.18	15.98
Merged-chr13-21200655-3	chr13	21200557	21200757	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	20726.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	20.59	14.34	18.83	19.71	19.64	18.5	17.94	17.89	18.1	31.63	17.08	16.29
Merged-chr2-11333073-3	chr2	11332964	11333164	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6425.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	14.13	11.32	14.83	12.47	22.5	16.62	19.27	18.76	24.39	22.59	25.12	26.94
Merged-chr15-77841429-3	chr15	77841325	77841525	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	CpG	750.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	17.36	14.34	21.68	10.05	13.09	8.15	9.97	10.6	23.8	30.63	22.11	15.66
Merged-chr11-114891331-3	chr11	114891222	114891422	+	989.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170758, intron 1 of 6)	Lx8|LINE|L1	1281.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	9.29	12.58	27.38	24.13	18.82	26.34	13.95	26.16	29.5	24.1	37.69	26.63
Merged-chr4-126102557-3	chr4	126102477	126102677	+	989.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	27.05	32.2	12.55	4.83	55.64	115.39	28.57	33.31	43.47	46.7	26.13	14.41
Merged-chr1-69687224-3	chr1	69687121	69687321	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1261.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	10.09	17.1	20.54	27.35	25.36	24.15	16.28	33.28	23.01	15.57	41.2	15.66
Merged-chr13-55210985-3	chr13	55210858	55211058	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 1 of 22)	CpG	1176.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	27.05	20.12	9.7	17.29	25.36	36.69	32.22	18.5	32.26	47.2	40.7	40.41
Merged-chr8-120786600-3	chr8	120786514	120786714	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47975.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	17.77	10.06	37.65	19.71	22.09	23.2	18.6	39.9	26.16	20.59	31.66	21.62
Merged-chr11-101725180-3	chr11	101725080	101725280	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7776.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	12.52	15.34	18.25	24.13	29.05	24.15	34.21	37.23	28.13	25.61	42.21	12.53
Merged-chrX-102032035-3	chrX	102031937	102032137	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	39270.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	15.75	13.83	21.68	21.72	24.96	12.54	10.63	17.52	14.36	27.62	23.11	10.65
Merged-chr5-150598398-3	chr5	150598282	150598482	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3857.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	19.38	10.06	29.66	12.07	19.64	16.62	10.63	20.94	36.98	20.08	25.12	15.66
Merged-chr8-86921159-3	chr8	86921061	86921261	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35903.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	21.4	10.82	21.68	16.49	22.91	23.52	7.97	19.43	23.41	19.58	36.68	16.6
Merged-chr1-88699601-3	chr1	88699496	88699696	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2595.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	22.21	24.4	14.26	18.5	22.91	33.87	16.94	14.97	18.1	8.54	20.1	12.22
Merged-chr5-123891867-3	chr5	123891782	123891982	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11862.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	28.67	33.96	16.54	13.27	29.86	41.71	13.95	19.74	43.86	40.17	33.67	15.04
Merged-chr19-43965791-3	chr19	43965659	43965859	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030703, intron 6 of 8)	intron (NM_030703, intron 6 of 8)	20761.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	20.59	20.63	25.67	25.34	21.68	16.31	31.56	17.83	13.77	12.55	15.58	9.08
Merged-chr16-33345188-3	chr16	33345076	33345276	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	35560.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	12.11	12.58	16.54	16.09	27.0	15.05	19.27	16.99	27.73	26.11	24.62	15.04
Merged-chr10-94828648-3	chr10	94828553	94828753	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	115925.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	18.57	16.1	31.38	6.84	15.55	20.07	20.93	19.57	19.47	15.06	8.04	18.8
Merged-chr14-20828705-3	chr14	20828595	20828795	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7967.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	10.9	19.37	7.99	1.21	15.96	25.09	13.95	6.03	30.49	16.07	17.59	10.65
Merged-chr16-38110797-1	chr16	38110697	38110897	+	989.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	RSINE1|SINE|B4	-21537.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.42	1.01	1.14	3.22	1.64	2.51	1.33	2.05	45.04	24.6	34.67	12.22
Merged-chr13-6647349-3	chr13	6647256	6647456	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	1415.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	14.94	17.86	10.84	16.89	18.41	14.42	20.59	15.45	24.78	18.58	28.14	14.41
Merged-chr1-61141120-3	chr1	61141033	61141233	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163219.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	18.17	27.92	20.54	17.7	19.64	33.55	15.61	9.95	51.73	48.7	44.72	6.27
Merged-chr12-72362088-5	chr12	72361989	72362189	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	46965.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	10.9	10.31	17.68	14.08	6.55	12.23	11.29	13.79	14.36	18.08	20.1	15.35
Merged-chr13-9382020-3	chr13	9381936	9382136	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	105511.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	17.77	13.58	12.55	25.34	44.59	26.65	14.62	31.09	30.29	18.58	34.67	25.06
Merged-chr4-116052869-3	chr4	116052772	116052972	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	1004.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	18.57	21.13	21.68	14.88	32.32	24.77	25.24	38.16	31.47	38.16	44.72	35.09
Merged-chr8-119353583-2	chr8	119353453	119353653	+	989.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	9015.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	6.86	12.07	18.25	12.47	11.86	13.48	16.61	20.27	15.93	7.03	11.05	7.52
Merged-chr7-126738133-2	chr7	126738045	126738245	+	989.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21481.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.4	0.0	0.0	0.8	13.09	18.19	6.64	10.51	19.87	27.62	28.64	15.98
Merged-chr4-134764450-3	chr4	134764351	134764551	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3553.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	20.59	16.1	10.27	16.49	27.41	32.93	38.53	35.13	37.37	26.61	34.17	20.68
Merged-chr4-53154999-3	chr4	53154890	53155090	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4905.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	13.73	11.07	16.54	14.88	35.18	41.71	23.92	20.47	14.75	24.1	26.63	14.41
Merged-chr17-71206276-3	chr17	71206182	71206382	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	1628.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	19.38	13.08	18.83	10.86	23.73	30.73	15.61	20.38	26.95	28.62	19.6	16.92
Merged-chr1-85853488-3	chr1	85853408	85853608	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41002.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	13.73	15.09	20.54	14.48	24.55	24.46	8.3	18.87	28.13	20.59	24.12	11.59
Merged-chr12-88361327-3	chr12	88361233	88361433	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361598, intron 1 of 9)	MER5A|DNA|hAT-Charlie	551.0	NM_001361598	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	17.77	11.57	29.66	12.87	25.77	21.95	25.91	36.48	28.72	29.62	28.14	30.07
Merged-chr12-113130289-3	chr12	113130195	113130395	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346696, intron 11 of 19)	intron (NM_001346696, intron 11 of 19)	-9941.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	16.15	14.84	17.68	24.13	16.77	23.52	23.25	17.16	19.47	21.09	49.24	27.57
Merged-chr2-166979256-3	chr2	166979131	166979331	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	RSINE1|SINE|B4	-14514.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	27.46	14.34	21.11	17.29	19.23	26.65	21.59	10.23	15.93	12.05	23.62	11.9
Merged-chr8-24419482-3	chr8	24419362	24419562	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19484.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	26.25	18.11	12.55	32.58	54.0	58.64	40.52	51.9	55.66	73.81	81.4	58.58
Merged-chr11-3667718-3	chr11	3667607	3667807	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9007.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	14.94	23.14	26.24	24.94	13.5	22.58	15.61	33.73	44.45	34.65	49.75	18.48
Merged-chr18-34930452-3	chr18	34930353	34930553	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	1550.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	10.5	11.57	13.69	16.89	9.82	12.54	11.63	10.63	22.03	11.05	20.6	11.9
Merged-chr8-45899926-3	chr8	45899836	45900036	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016798, intron 2 of 6)	intron (NM_016798, intron 2 of 6)	14451.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	27.86	10.56	21.68	24.53	19.23	19.76	25.91	28.96	24.39	26.11	41.2	18.17
Merged-chr1-171660614-3	chr1	171660522	171660722	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-7585.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	21.8	17.86	19.4	22.12	14.32	22.89	10.63	21.34	27.14	17.07	19.6	16.92
Merged-chr10-122985583-4	chr10	122985473	122985673	+	989.535706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029527)	TTS (NR_029527)	151.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	16.56	18.86	11.98	6.03	15.14	16.93	5.31	13.32	19.28	27.11	16.08	20.36
Merged-chr11-120310986-3	chr11	120310910	120311110	+	989.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	36403.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	18.57	20.88	13.69	23.73	9.82	20.07	17.27	12.87	18.49	15.57	6.53	13.47
Merged-chr16-51930140-3	chr16	51930125	51930325	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57062.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	8.48	8.8	14.83	11.26	8.18	11.92	11.63	16.32	11.01	10.04	11.05	15.35
Merged-chr17-50369509-3	chr17	50369466	50369666	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75946.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	22.61	18.86	6.85	20.91	25.36	19.76	18.27	20.16	15.34	26.61	20.1	14.1
Merged-chr11-30954017-2	chr11	30953917	30954117	+	989.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023906)	promoter-TSS (NM_023906)	114.0	NM_025745	66753.0	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	9.69	10.56	5.13	12.87	13.09	14.42	12.95	16.54	27.34	27.11	31.15	12.84
Merged-chr4-11123752-3	chr4	11123642	11123842	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151526)	promoter-TSS (NR_151526)	-216.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	14.54	16.85	17.11	24.94	35.18	13.48	28.23	37.63	21.24	16.57	47.23	25.69
Merged-chr2-5014806-3	chr2	5014700	5014900	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2009.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	14.13	8.55	19.97	16.09	14.73	16.62	12.29	26.19	23.21	22.59	38.69	13.16
Merged-chr7-125541072-3	chr7	125540936	125541136	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11246.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	18.98	9.06	30.8	22.12	18.41	15.05	19.27	22.09	12.19	18.58	22.11	20.68
Merged-chr18-80738359-3	chr18	80738255	80738455	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001201569, intron 28 of 29)	intron (NM_001201569, intron 28 of 29)	-25284.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	26.65	16.85	52.48	44.64	39.68	39.82	37.54	68.83	16.72	14.06	36.18	15.98
Merged-chr4-150371878-3	chr4	150371776	150371976	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	CpG	89960.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	29.88	30.18	33.66	51.48	31.09	53.62	22.92	41.1	36.39	17.57	49.24	33.21
Merged-chr6-37441824-2	chr6	37441700	37441900	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178661, exon 1 of 12)	exon (NM_178661, exon 1 of 12)	348.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	10.5	9.81	15.97	16.49	11.86	13.48	16.94	14.07	17.7	19.58	21.61	17.54
Merged-chr11-101562629-3	chr11	101562536	101562736	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008676, intron 7 of 23)	B2_Mm2|SINE|B2	9982.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	21.0	24.4	22.82	21.32	16.77	39.2	15.61	17.41	31.47	30.13	19.6	17.54
Merged-chr11-4260701-3	chr11	4260647	4260847	+	989.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3179.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	37.55	39.99	19.97	13.67	35.59	62.71	22.92	20.72	40.91	48.2	16.08	10.34
Merged-chr14-30716270-3	chr14	30716192	30716392	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166532, intron 1 of 20)	CpG	677.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	17.77	20.88	18.25	21.72	15.14	25.4	9.97	14.05	17.7	13.56	13.57	13.47
Merged-chr3-65953946-3	chr3	65953830	65954030	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	4319.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	19.38	16.6	34.8	17.7	19.23	11.6	5.65	16.46	32.85	24.1	15.07	17.23
Merged-chr11-61642350-3	chr11	61642245	61642445	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10976.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	7.27	14.09	17.11	21.72	17.59	30.42	17.27	27.59	22.03	24.1	30.65	15.66
Merged-chr4-131843499-3	chr4	131843406	131843606	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025297)	promoter-TSS (NM_025297)	35.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	23.42	25.91	23.39	14.08	15.55	31.98	22.59	20.94	31.27	30.63	28.64	15.04
Merged-chr2-104712248-3	chr2	104712096	104712296	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177190)	promoter-TSS (NM_177190)	-34.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	11.71	9.81	16.54	15.28	13.91	23.83	21.59	16.88	17.9	19.58	22.11	12.53
Merged-chr1-93446116-3	chr1	93446031	93446231	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301364)	promoter-TSS (NM_001301364)	-430.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	16.96	12.58	18.83	14.08	10.64	17.25	19.93	21.34	21.05	12.55	20.6	14.1
Merged-chrX-12832920-3	chrX	12832790	12832990	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	70612.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	18.98	13.33	21.11	9.65	32.73	23.83	14.28	33.34	21.83	22.09	26.13	17.54
Merged-chr11-5949779-3	chr11	5949693	5949893	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010292, exon 1 of 10)	5' UTR (NM_010292, exon 1 of 10)	288.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	26.25	8.8	21.11	18.9	23.32	19.76	20.26	16.37	22.23	16.07	19.6	19.74
Merged-chr11-43362058-3	chr11	43361950	43362150	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	12411.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	15.34	17.1	17.11	18.1	13.5	25.09	12.62	19.07	41.89	26.11	53.77	22.87
Merged-chr10-20653482-3	chr10	20653365	20653565	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	B4A|SINE|B4	71613.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	30.69	28.67	22.25	22.52	34.36	33.55	22.92	42.79	34.03	26.61	33.67	13.16
Merged-chr3-15576656-3	chr3	15576540	15576740	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1575.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	15.75	13.08	52.48	28.56	35.59	25.09	35.87	21.2	63.73	31.63	64.32	35.4
Merged-chr17-71504045-3	chr17	71503938	71504138	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023294, intron 13 of 16)	intron (NM_023294, intron 13 of 16)	22819.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	11.71	9.56	26.24	19.71	23.73	29.16	15.61	27.62	40.91	50.71	38.69	23.81
Merged-chr9-75094915-3	chr9	75094821	75095021	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	23715.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	23.02	25.4	23.96	25.34	42.55	38.57	38.86	37.85	23.6	14.06	26.13	22.24
Merged-chr11-75154395-3	chr11	75154286	75154486	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	13766.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	16.56	16.35	22.25	20.91	21.27	27.28	18.6	24.67	23.21	22.09	16.58	13.47
Merged-chr12-54696548-3	chr12	54696460	54696660	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331162)	promoter-TSS (NM_001331162)	-666.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	24.23	19.12	18.83	16.09	15.14	28.22	12.29	18.62	35.21	29.62	37.18	24.43
Merged-chr5-107646129-3	chr5	107646025	107646225	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359917, intron 11 of 12)	B1_Mur1|SINE|Alu	-12275.0	NR_046195	78443.0	Mm.490703	NR_046195	ENSMUSG00000085900	A930041C12Rik	-	RIKEN cDNA A930041C12 gene	ncRNA	13.73	5.53	22.25	15.69	37.23	37.0	16.61	35.55	24.0	10.04	24.12	16.6
Merged-chr16-58512342-3	chr16	58512263	58512463	+	989.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	11063.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	9.69	4.02	6.28	18.5	24.55	12.23	8.97	19.46	21.05	32.64	20.6	13.16
Merged-chr7-19841515-3	chr7	19841401	19841601	+	989.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10502.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	19.79	18.36	19.97	14.48	17.18	27.28	13.62	20.55	34.62	14.56	19.09	16.92
Merged-chr11-58978725-3	chr11	58978614	58978814	+	989.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	621.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	20.59	9.31	22.82	12.87	12.68	15.37	8.64	12.03	22.62	18.58	21.61	14.1
Merged-chr2-153275153-2	chr2	153275043	153275243	+	989.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16273.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	2.42	2.52	0.0	0.4	18.0	18.5	31.89	33.87	18.69	15.06	26.63	12.22
Merged-chrX-20617284-2	chrX	20617174	20617374	+	989.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167775)	promoter-TSS (NM_001167775)	-229.0	NM_001358904	236732.0	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	10.9	7.55	7.99	11.66	15.55	11.29	15.94	15.84	13.37	24.1	26.63	14.72
Merged-chr13-49243571-3	chr13	49243469	49243669	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	4725.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	19.38	16.6	29.66	14.08	13.91	25.09	18.6	16.15	25.77	13.05	20.6	3.76
Merged-chr10-87908984-3	chr10	87908874	87909074	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	47863.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	24.23	14.34	53.05	61.54	30.27	24.15	54.14	61.51	18.29	15.06	54.27	25.69
Merged-chr17-87446108-3	chr17	87446006	87446206	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007589, intron 1 of 5)	intron (NM_007589, intron 1 of 5)	829.0	NM_001355703	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	22.61	15.34	17.11	14.48	11.86	11.92	14.62	18.56	21.64	14.56	21.61	12.53
Merged-chr3-14886505-6	chr3	14886411	14886611	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009801, exon 1 of 7)	5' UTR (NM_009801, exon 1 of 7)	223.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	11.71	13.33	11.41	27.35	27.0	8.47	17.61	15.31	12.0	22.59	13.06	12.84
Merged-chr14-103343992-3	chr14	103343899	103344099	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	2801.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	17.36	26.91	19.97	19.71	18.41	21.95	8.97	14.41	24.0	32.13	15.07	20.99
Merged-chr18-67698671-3	chr18	67698570	67698770	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25951.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	12.92	12.32	30.23	21.72	15.96	24.77	16.28	25.99	29.9	25.61	24.12	23.49
Merged-chr2-23015936-3	chr2	23015844	23016044	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	24297.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	12.11	16.35	19.97	20.51	25.77	18.81	15.94	21.39	20.65	24.6	35.17	23.49
Merged-chr8-60632790-3	chr8	60632711	60632911	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-14.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	35.94	10.82	19.4	33.78	46.64	52.05	51.82	51.14	19.08	15.57	27.13	15.66
Merged-chr4-71126797-1	chr4	71126697	71126897	+	989.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-591869.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	1.62	3.27	0.0	2.82	1.23	4.08	4.65	3.62	13.77	21.09	19.6	4.7
Merged-chr17-26244723-3	chr17	26244613	26244813	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-471.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	21.8	9.56	15.97	17.29	28.23	17.87	11.96	10.46	21.24	14.56	27.64	13.47
Merged-chr14-103543549-3	chr14	103543452	103543652	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 7 of 30)	intron (NM_022886, intron 7 of 30)	30211.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	18.57	11.32	15.4	28.96	30.68	21.01	19.93	39.98	16.72	26.11	22.61	24.75
Merged-chr12-112809316-1	chr12	112809216	112809416	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_145450, exon 1 of 5)	5' UTR (NM_145450, exon 1 of 5)	341.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	24.63	24.4	15.4	23.33	4.09	9.09	7.64	4.79	5.7	9.54	4.52	3.76
Merged-chr2-167892117-3	chr2	167892013	167892213	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40214.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	16.56	21.63	17.11	22.93	26.59	18.19	19.6	26.83	32.85	26.11	36.68	18.48
Merged-chr3-135628196-3	chr3	135628097	135628297	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	63350.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	7.27	13.58	17.11	20.91	14.73	12.86	10.96	21.0	18.88	15.57	30.65	13.78
Merged-chr3-107357332-3	chr3	107357226	107357426	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24037.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	16.56	7.8	8.56	16.89	12.68	26.03	20.59	12.53	22.42	11.05	26.63	7.21
Merged-chr5-122054666-3	chr5	122054563	122054763	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-4812.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	12.52	12.58	26.81	24.13	17.59	21.32	10.96	24.0	28.72	16.07	25.12	18.8
Merged-chr4-149099744-3	chr4	149099637	149099837	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019781)	promoter-TSS (NM_019781)	75.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	29.88	32.45	32.52	21.32	25.77	22.89	20.93	13.85	22.03	16.57	12.56	14.72
Merged-chr6-72390551-3	chr6	72390451	72390651	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016794, exon 1 of 3)	5' UTR (NM_016794, exon 1 of 3)	116.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	33.52	17.36	16.54	8.45	36.0	22.89	12.29	23.44	26.75	15.57	25.12	21.3
Merged-chr17-65737310-3	chr17	65737205	65737405	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	35447.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	17.77	18.11	15.97	18.9	22.5	22.26	7.97	16.74	22.42	24.1	19.09	18.48
Merged-chr15-10873754-3	chr15	10873656	10873856	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44705.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	20.19	12.07	30.23	28.96	15.55	24.46	26.91	29.52	45.63	36.65	53.26	15.66
Merged-chr15-102326168-3	chr15	102326080	102326280	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027044)	promoter-TSS (NM_027044)	64.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	17.36	10.56	9.7	17.7	25.36	20.38	11.96	12.95	24.19	20.59	25.63	16.92
Merged-chr12-59219051-3	chr12	59218939	59219139	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033156, exon 1 of 4)	exon (NM_001033156, exon 1 of 4)	444.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	19.38	17.36	12.55	20.91	13.91	15.05	20.59	19.77	23.41	32.13	20.6	14.1
Merged-chr11-109440058-3	chr11	109439959	109440159	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040680)	promoter-TSS (NR_040680)	-19.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	14.94	16.85	25.1	16.49	15.14	29.16	16.28	15.84	18.49	15.57	17.59	18.48
Merged-chr6-46281195-3	chr6	46281091	46281291	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 10 of 23)	L1MB1|LINE|L1	-963205.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	17.36	11.57	38.79	62.34	36.82	38.57	44.51	86.05	31.67	30.63	46.23	26.63
Merged-chr13-51107024-3	chr13	51106905	51107105	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283029, intron 1 of 5)	MTE2b|LTR|ERVL-MaLR	5458.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	17.77	17.36	15.4	17.29	22.5	17.56	10.63	19.4	28.32	22.09	21.1	11.59
Merged-chr10-69257754-3	chr10	69257651	69257851	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	44557.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	12.92	22.13	34.8	23.33	14.32	22.58	14.62	16.77	29.7	21.09	31.66	17.86
Merged-chr18-75503564-3	chr18	75503488	75503688	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11057.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	33.52	39.49	32.52	46.25	29.86	26.03	36.54	37.65	19.28	18.08	31.15	23.49
Merged-chr1-36072110-3	chr1	36072018	36072218	+	989.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3718.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	35.94	35.72	35.94	18.9	36.41	67.42	43.85	31.15	41.11	45.19	32.66	14.41
Merged-chr17-30574678-2	chr17	30574595	30574795	+	989.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	1592.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	21.4	15.34	17.68	13.27	7.36	2.82	0.0	2.24	10.82	14.56	18.09	10.96
Merged-chr16-22124484-2	chr16	22124399	22124599	+	989.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	38800.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	15.75	20.12	19.97	8.04	7.77	22.89	1.66	3.11	40.71	25.11	28.14	11.59
Merged-chr4-141767032-3	chr4	141766941	141767141	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172338, intron 11 of 14)	intron (NM_172338, intron 11 of 14)	20366.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	19.79	18.86	41.07	26.55	17.59	19.76	13.95	35.44	22.03	26.11	24.62	10.96
Merged-chr16-55790545-3	chr16	55790425	55790625	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31613.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	18.57	15.59	14.26	10.46	62.18	36.69	44.18	46.93	31.27	29.62	35.68	16.92
Merged-chr2-69856576-3	chr2	69856477	69856677	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4985.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	34.32	28.17	9.7	45.05	39.68	34.49	23.58	30.06	16.33	19.08	28.64	16.92
Merged-chr3-48080832-3	chr3	48080726	48080926	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54067.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	31.9	33.2	34.23	13.67	56.46	41.08	36.54	40.99	76.12	71.3	70.85	34.15
Merged-chr3-79567405-3	chr3	79567313	79567513	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152118)	promoter-TSS (NR_152118)	266.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	10.5	18.36	10.84	12.07	17.18	19.44	16.94	14.89	23.01	22.09	13.57	13.78
Merged-chr7-134556210-3	chr7	134556098	134556298	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-114489.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	49.26	11.57	36.51	42.63	76.5	58.32	62.78	91.01	38.94	61.26	64.82	27.88
Merged-chr16-26689917-3	chr16	26689845	26690045	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152416, intron 4 of 12)	intron (NR_152416, intron 4 of 12)	65557.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	27.86	10.56	16.54	27.75	26.59	13.8	19.93	27.62	19.08	14.06	29.65	12.22
Merged-chr12-4477208-5	chr12	4477104	4477304	+	989.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010881)	promoter-TSS (NM_010881)	-22.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	11.31	5.28	7.42	5.63	6.55	10.66	4.65	4.91	21.24	16.57	26.63	14.41
Merged-chr2-164680077-3	chr2	164679976	164680176	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5031.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	18.17	11.07	34.8	16.09	42.55	38.57	18.6	35.19	48.58	25.11	52.26	36.65
Merged-chr5-115187400-3	chr5	115187281	115187481	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1260.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	34.73	15.85	29.66	14.08	14.73	12.54	5.65	9.9	29.7	37.16	25.12	19.11
Merged-chr9-46120112-3	chr9	46120038	46120238	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	107318.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	21.0	17.1	22.25	24.13	15.96	31.04	19.93	30.81	17.51	12.55	32.16	10.34
Merged-chr12-91008956-1	chr12	91008856	91009056	+	989.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-36892.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.0	1.76	3.42	2.82	13.91	15.99	9.97	17.52	8.46	7.03	5.53	1.88
Merged-chr3-27188393-3	chr3	27188303	27188503	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	5399.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	24.23	17.36	14.26	26.95	31.5	24.77	26.57	35.13	25.37	27.62	38.69	24.43
Merged-chr2-32967517-3	chr2	32967408	32967608	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4207.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	16.56	18.11	23.39	11.26	21.27	25.4	16.94	19.09	30.68	29.12	38.19	25.69
Merged-chr6-124496170-3	chr6	124496057	124496257	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181344, intron 2 of 5)	HAL1|LINE|L1	3044.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	15.34	18.61	19.97	14.08	33.14	35.12	21.26	30.62	25.37	26.11	23.11	13.47
Merged-chr12-40606158-1	chr12	40606058	40606258	+	989.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	160105.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.25	6.79	12.55	7.64	14.32	13.48	11.63	15.56	10.82	2.51	8.04	4.39
Merged-chr1-37559841-3	chr1	37559767	37559967	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18851.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	17.36	9.81	43.35	26.55	24.55	28.22	31.22	49.04	33.83	28.12	55.27	25.69
Merged-chr17-87299170-3	chr17	87299072	87299272	+	989.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	16286.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	15.34	13.58	39.93	18.1	31.5	16.93	28.9	31.88	18.88	15.06	20.1	11.28
Merged-chr18-61090850-3	chr18	61090747	61090947	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14725.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	12.52	20.63	46.78	17.7	27.82	19.44	17.61	27.28	33.44	23.6	33.16	15.66
Merged-chr1-20829538-3	chr1	20829442	20829642	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9230.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	16.56	12.32	19.4	29.36	22.91	14.74	22.92	26.3	23.6	21.09	29.65	18.8
Merged-chr15-66813588-3	chr15	66813478	66813678	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18251.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	13.73	14.59	19.97	12.07	22.09	22.58	22.59	24.98	25.77	28.12	20.1	16.6
Merged-chr17-28015592-3	chr17	28015494	28015694	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	64990.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	14.54	7.8	14.26	15.28	15.14	21.64	14.95	19.18	16.33	9.54	19.09	9.4
Merged-chr2-32876107-3	chr2	32876011	32876211	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-23.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	27.46	22.64	21.11	23.73	25.36	33.87	23.25	25.79	37.96	30.13	19.09	15.98
Merged-chr4-127061164-3	chr4	127061062	127061262	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356311)	promoter-TSS (NM_001356311)	-8.0	NM_001356311	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	21.4	19.37	14.83	23.33	11.45	27.28	14.95	12.9	37.37	33.14	34.67	15.35
Merged-chr13-51401363-3	chr13	51401249	51401449	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7269.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	18.98	14.59	27.95	20.91	12.68	24.77	21.92	35.75	23.01	31.13	38.19	19.74
Merged-chr5-53826139-3	chr5	53826035	53826235	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	16508.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	14.13	30.94	33.66	41.43	22.09	14.42	14.62	25.37	25.96	21.59	52.76	28.51
Merged-chr9-124142039-3	chr9	124141922	124142122	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20479.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	24.23	20.12	30.8	31.77	22.09	47.66	20.59	20.75	51.73	42.18	34.67	10.34
Merged-chr1-171233298-5	chr1	171233273	171233473	+	989.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 1 of 4)	YREP_Mm|Unknown|Unknown	976.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	4.85	12.58	8.56	4.42	13.91	13.48	6.98	7.65	13.77	12.55	10.05	5.95
Merged-chr12-79864367-3	chr12	79864259	79864459	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60374.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	20.59	11.57	14.83	18.5	18.41	24.15	16.94	22.29	20.85	21.59	19.6	11.28
Merged-chr8-88294150-3	chr8	88294053	88294253	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-51.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	18.57	11.82	18.25	26.14	33.55	27.28	13.95	29.75	19.87	16.07	21.61	26.63
Merged-chr13-58688450-3	chr13	58688358	58688558	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73853.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	16.15	15.09	27.95	21.32	16.77	12.23	12.29	21.79	22.42	16.07	20.1	14.1
Merged-chr4-62847435-3	chr4	62847332	62847532	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118142.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	26.65	16.35	24.53	26.55	22.91	30.42	37.87	36.06	28.52	13.05	26.13	27.25
Merged-chr17-46140027-3	chr17	46139919	46140119	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029338, intron 2 of 4)	intron (NM_029338, intron 2 of 4)	4179.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	13.33	19.62	17.11	16.09	28.64	39.2	19.6	18.34	35.8	26.11	37.18	19.74
Merged-chr7-143021540-3	chr7	143021432	143021632	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110354)	TTS (NR_110354)	15873.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	23.42	33.2	40.5	14.08	18.82	54.88	13.29	13.32	44.45	24.6	29.14	18.8
Merged-chr10-86889774-3	chr10	86889669	86889869	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 41 of 68)	Lx8|LINE|L1	110764.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	13.73	12.83	33.09	30.57	21.68	16.93	59.13	67.09	16.13	9.54	28.64	27.25
Merged-chr15-99406514-1	chr15	99406414	99406614	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001171035, intron 7 of 9)	intron (NM_001171035, intron 7 of 9)	13295.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	22.61	9.56	23.39	12.07	0.0	0.63	0.0	0.11	0.0	2.01	0.0	0.94
Merged-chr2-166275565-3	chr2	166275451	166275651	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 1 of 2)	intron (NR_033467, intron 1 of 2)	1643.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	17.77	14.84	33.66	21.72	28.23	18.19	27.57	53.78	14.95	11.55	16.08	13.47
Merged-chr12-32698986-3	chr12	32698883	32699083	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121352.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	25.44	27.92	37.65	32.58	24.96	32.93	23.58	30.53	30.88	28.12	36.68	11.9
Merged-chr4-14863619-1	chr4	14863519	14863719	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-600.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	5.65	5.28	4.56	7.24	5.73	8.15	7.97	11.33	9.24	4.52	9.04	6.27
Merged-chr9-32633168-1	chr9	32633068	32633268	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62874.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.81	1.51	0.0	2.01	6.95	1.57	6.98	8.07	1.97	0.0	0.5	2.82
Merged-chr13-19794672-1	chr13	19794572	19794772	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181754, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	29585.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	1.21	2.52	0.0	2.01	4.91	3.14	7.97	8.38	1.77	0.0	2.01	0.31
Merged-chr11-101226357-3	chr11	101226233	101226433	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007970, intron 1 of 20)	CpG	130.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	18.98	10.56	13.12	16.89	26.18	33.87	22.26	24.76	26.36	38.16	37.18	20.36
Merged-chr19-21913911-3	chr19	21913808	21914008	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135568.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	23.42	20.88	27.38	43.84	23.73	22.58	21.26	36.7	37.96	17.07	42.21	14.1
Merged-chr9-22467885-1	chr9	22467785	22467985	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018739, intron 1 of 5)	CpG	471.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	12.11	6.79	8.56	7.64	11.86	6.27	18.27	9.93	8.85	13.56	10.55	8.46
Merged-chr17-84860114-3	chr17	84860020	84860220	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-69334.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	69.86	67.16	128.92	106.99	36.0	23.2	35.87	49.46	25.57	14.56	37.69	30.7
Merged-chr17-70848463-3	chr17	70848367	70848567	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	1323.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.08	14.09	11.98	12.47	16.36	12.23	15.28	13.91	20.06	16.07	15.07	13.16
Merged-chr11-54811441-3	chr11	54811344	54811544	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8475.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	19.38	18.36	8.56	15.69	16.77	47.35	11.63	11.86	22.42	20.59	35.68	15.35
Merged-chr17-84267928-3	chr17	84267821	84268021	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 30 of 37)	L1M3|LINE|L1	-79974.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	14.13	9.81	23.39	31.77	20.05	12.54	23.58	25.77	27.93	17.07	22.61	13.16
Merged-chr6-22474272-3	chr6	22474171	22474371	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118190.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	18.17	23.64	40.5	37.0	24.55	22.26	24.25	49.23	40.52	35.65	32.66	16.92
Merged-chr19-46395772-3	chr19	46395666	46395866	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016860)	promoter-TSS (NM_016860)	-31.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	27.86	17.86	15.97	16.09	21.27	33.24	15.28	23.72	29.31	28.12	45.22	19.74
Merged-chr5-67821441-3	chr5	67821319	67821519	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	C-rich|Low_complexity|Low_complexity	26012.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	23.02	13.58	23.96	28.96	28.64	14.11	12.95	26.07	24.98	20.08	18.59	12.84
Merged-chr11-101580046-3	chr11	101579958	101580158	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008676, intron 23 of 23)	intron (NM_008676, intron 23 of 23)	-2184.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	32.71	28.17	34.23	22.93	49.09	49.86	22.59	36.25	39.53	33.64	27.64	35.09
Merged-chr5-123039259-3	chr5	123039170	123039370	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347456, exon 3 of 4)	exon (NM_001347456, exon 3 of 4)	7746.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	15.34	15.09	30.23	15.28	30.27	27.28	17.94	20.66	50.75	25.61	40.7	23.81
Merged-chr7-79743118-3	chr7	79743031	79743231	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037927)	promoter-TSS (NM_001037927)	0.0	NR_153403	18631.0	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	23.82	15.85	14.83	15.28	27.0	22.89	9.97	32.61	40.91	29.62	47.23	26.0
Merged-chr5-149692712-2	chr5	149692651	149692851	+	988.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	14494.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	13.33	15.34	25.67	9.25	9.0	12.86	14.62	12.95	0.2	1.0	2.51	0.0
Merged-chr2-59184279-3	chr2	59184185	59184385	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23435.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	32.3	27.17	29.66	30.16	18.41	34.81	18.93	26.64	41.89	47.2	38.19	10.96
Merged-chr17-4994381-3	chr17	4994291	4994491	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085355)	promoter-TSS (NM_001085355)	-683.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	14.94	21.38	22.25	18.1	14.73	18.5	21.92	18.81	28.32	18.08	15.07	12.53
Merged-chr10-24641945-3	chr10	24641850	24642050	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008813, exon 25 of 25)	exon (NM_008813, exon 25 of 25)	46508.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	20.19	10.82	36.51	39.82	35.59	17.25	44.84	63.2	42.88	9.04	74.87	30.07
Merged-chr13-56334491-3	chr13	56334376	56334576	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-28424.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	25.04	12.07	19.4	22.12	42.14	36.37	29.23	32.44	14.75	38.66	35.68	17.23
Merged-chr14-121907433-3	chr14	121907314	121907514	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 3 of 8)	intron (NM_026861, intron 3 of 8)	8360.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	16.56	15.09	11.41	24.53	17.59	11.6	13.29	26.19	14.75	13.05	23.11	6.27
Merged-chr13-67729146-3	chr13	67729052	67729252	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	21.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	17.77	17.36	19.97	13.67	18.82	12.86	23.25	25.09	30.88	17.57	38.19	25.69
Merged-chr19-34548160-3	chr19	34548059	34548259	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2535.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	19.79	18.11	14.83	23.33	20.05	30.1	9.97	15.84	32.06	18.08	33.67	16.92
Merged-chr15-26360537-3	chr15	26360441	26360641	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51493.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	13.73	20.88	24.53	25.34	63.82	63.34	52.82	71.97	80.25	74.81	106.53	42.6
Merged-chr2-51013237-3	chr2	51013123	51013323	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103539.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	12.52	19.12	37.08	33.78	16.36	30.42	23.92	43.01	23.01	29.12	46.23	16.6
Merged-chr11-106973192-3	chr11	106973093	106973293	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26332.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	18.17	19.87	13.12	14.48	38.46	33.24	13.62	14.52	46.22	52.72	51.25	28.82
Merged-chr3-104481509-3	chr3	104481416	104481616	+	988.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025067, intron 9 of 17)	intron (NM_001025067, intron 9 of 17)	30402.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	21.8	11.57	25.67	24.53	14.32	12.23	11.63	27.08	18.49	15.06	32.66	10.02
Merged-chr10-79533372-3	chr10	79533304	79533504	+	988.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302389, intron 1 of 5)	CpG	383.0	NM_001302442	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	21.4	20.12	23.39	16.09	27.0	24.15	35.54	20.75	25.96	27.11	15.07	15.35
Merged-chr6-129501141-2	chr6	129501040	129501240	+	988.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138648, intron 2 of 7)	intron (NM_138648, intron 2 of 7)	6025.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	25.44	15.59	15.97	23.33	25.77	20.07	35.87	31.04	1.97	0.0	0.0	0.63
Merged-chr16-21477273-1	chr16	21477173	21477373	+	988.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 17 of 46)	intron (NM_001081366, intron 17 of 46)	54155.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.04	5.53	14.26	8.04	12.27	12.86	15.94	17.38	4.52	7.53	9.55	5.33
Merged-chr2-167751745-3	chr2	167751612	167751812	+	988.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60535.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	14.54	12.83	15.4	13.27	23.32	22.58	19.27	26.24	25.96	21.09	39.19	23.81
Merged-chr14-66179148-3	chr14	66179060	66179260	+	988.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	34664.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	31.9	26.16	21.11	11.66	12.68	29.79	18.93	15.17	28.13	15.57	21.61	13.16
Merged-chr5-114597857-3	chr5	114597752	114597952	+	988.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	B4|SINE|B4	29601.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	16.96	13.33	16.54	14.48	38.46	29.48	21.59	32.72	33.63	16.57	27.64	29.76
Merged-chr10-80988226-3	chr10	80988117	80988317	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	13148.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	26.65	26.66	15.97	18.1	17.59	34.18	10.96	15.93	23.21	17.07	21.1	12.84
Merged-chr19-55587920-3	chr19	55587820	55588020	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	114284.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	17.36	11.07	13.12	21.72	13.09	16.62	19.27	21.5	14.36	9.04	16.08	11.28
Merged-chr8-20550209-3	chr8	20550132	20550332	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-64695.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	67.43	50.81	47.35	45.05	96.14	113.51	53.48	45.25	94.21	70.29	156.77	50.12
Merged-chr9-65196642-3	chr9	65196549	65196749	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U5|snRNA|snRNA	-18041.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	15.34	11.82	13.12	12.07	27.82	38.57	22.59	19.07	36.78	28.12	51.25	28.51
Merged-chr13-97240480-3	chr13	97240436	97240636	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-569.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	13.33	24.65	12.55	27.75	9.82	15.68	18.27	18.45	15.93	16.07	17.59	12.22
Merged-chr1-60070881-3	chr1	60070786	60070986	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27021.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	14.94	13.58	17.11	20.11	24.14	21.64	11.29	6.98	27.73	21.59	24.62	15.66
Merged-chr5-143537256-3	chr5	143537157	143537357	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9226.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	11.31	14.34	23.39	11.66	25.36	11.6	16.28	25.35	20.65	25.61	26.13	22.87
Merged-chr15-89177327-3	chr15	89177225	89177425	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-3374.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	26.65	20.88	13.12	12.87	18.41	28.85	25.58	18.67	37.17	39.67	40.2	27.25
Merged-chr15-27628014-3	chr15	27627925	27628125	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	2668.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	18.57	13.08	18.25	20.91	31.91	40.76	24.58	26.38	28.52	18.08	36.18	18.8
Merged-chr7-138392851-3	chr7	138392750	138392950	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	4880.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	19.38	11.32	16.54	27.75	15.96	24.15	28.9	28.07	20.46	14.56	18.59	6.58
Merged-chr2-133554916-1	chr2	133554816	133555016	+	988.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007553, intron 2 of 2)	intron (NM_007553, intron 2 of 2)	2757.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	11.71	2.77	5.13	2.01	23.73	17.25	13.62	10.93	5.7	16.07	10.55	2.51
Merged-chr16-57123287-3	chr16	57123189	57123389	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	1575.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	18.57	17.61	19.4	12.47	20.05	15.37	16.28	14.13	25.37	20.08	34.67	13.47
Merged-chr2-167504059-3	chr2	167504000	167504200	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153838, intron 1 of 4)	CpG	657.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	13.33	14.84	9.7	9.65	14.32	29.48	14.28	14.44	19.87	25.61	19.09	18.17
Merged-chr13-46180876-3	chr13	46180789	46180989	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92832.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	26.25	14.34	8.56	24.94	24.55	32.3	17.61	24.76	19.87	16.07	29.14	9.71
Merged-chr2-167007778-3	chr2	167007696	167007896	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7517.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	28.27	19.37	27.95	20.11	25.36	36.06	14.28	15.45	18.29	32.13	28.14	10.34
Merged-chr2-90904683-3	chr2	90904556	90904756	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311116)	promoter-TSS (NM_001311116)	65.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	29.48	12.32	23.39	22.12	25.36	24.46	12.62	18.14	30.29	9.54	28.14	17.23
Merged-chr15-99045079-3	chr15	99045003	99045203	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-10071.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	14.13	16.85	18.83	12.07	19.23	31.67	14.95	23.41	17.11	35.65	20.1	13.16
Merged-chr11-21564040-3	chr11	21563906	21564106	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316675, intron 4 of 8)	intron (NM_001316675, intron 4 of 8)	7928.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	16.15	9.56	17.11	14.88	14.73	11.6	11.63	22.68	24.39	35.15	26.13	23.18
Merged-chr9-73039643-3	chr9	73039465	73039665	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308425)	promoter-TSS (NM_001308425)	134.0	NM_018889	55981.0	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	14.94	14.34	12.55	23.33	24.55	6.59	30.56	22.85	26.16	27.62	19.6	17.23
Merged-chr4-135918983-4	chr4	135918886	135919086	+	988.650818	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-1740.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	6.06	11.32	18.25	13.67	12.27	8.47	12.62	14.22	21.83	22.09	8.04	15.04
Merged-chr19-45675971-3	chr19	45675861	45676061	+	988.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15768.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	16.15	11.57	29.66	28.96	12.27	16.62	13.95	25.32	17.7	8.54	18.59	18.17
Merged-chr17-71096713-3	chr17	71096604	71096804	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	77147.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	23.42	17.36	36.51	14.08	36.41	23.83	21.92	31.77	32.26	28.62	31.15	15.35
Merged-chr13-111808648-3	chr13	111808531	111808731	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011945, exon 1 of 20)	exon (NM_011945, exon 1 of 20)	362.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	23.42	22.89	20.54	32.58	23.32	31.98	27.57	22.04	21.44	17.57	32.16	26.94
Merged-chr16-91522699-3	chr16	91522606	91522806	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4838.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	20.59	27.42	19.97	14.88	35.18	25.71	17.27	23.05	33.63	56.24	41.71	20.36
Merged-chr9-45282686-3	chr9	45282606	45282806	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13557.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	12.11	13.08	17.68	12.07	25.77	25.4	18.6	32.3	23.41	20.59	19.09	12.22
Merged-chr2-18063902-3	chr2	18063833	18064033	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-652.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	20.59	16.35	37.08	24.94	30.27	28.54	10.96	30.03	36.98	25.61	35.17	28.82
Merged-chr7-27838579-3	chr7	27838476	27838676	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011762)	promoter-TSS (NM_011762)	-8.0	NM_011762	22717.0	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	22.61	22.89	23.39	13.27	19.64	21.32	34.88	19.91	17.9	26.61	25.63	14.72
Merged-chr12-65037710-3	chr12	65037609	65037809	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1375.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	14.13	15.34	19.4	14.08	24.14	41.39	22.26	24.08	29.9	29.12	30.15	23.49
Merged-chr18-60523941-3	chr18	60523851	60524051	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2203.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	13.33	11.82	21.68	19.31	20.05	16.31	16.28	18.7	18.1	6.03	13.57	9.71
Merged-chr10-61167550-3	chr10	61167433	61167633	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4431.0	NM_001017419	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	24.23	7.04	30.23	26.55	16.36	20.07	26.24	29.19	27.54	18.08	28.64	27.25
Merged-chr4-122860208-3	chr4	122860121	122860321	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 12 of 12)	intron (NM_007598, intron 12 of 12)	23994.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	8.88	18.11	17.68	24.13	15.96	25.4	19.93	32.61	36.98	18.08	36.18	17.54
Merged-chr11-3195755-3	chr11	3195650	3195850	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2287.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	22.21	13.58	16.54	22.93	16.36	13.17	14.28	13.09	21.83	36.65	20.1	30.07
Merged-chr14-66281052-3	chr14	66280958	66281158	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	-6.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	18.57	14.59	17.11	15.69	31.09	17.25	9.63	20.66	28.13	20.08	31.15	13.78
Merged-chr19-46864283-3	chr19	46864174	46864374	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98077.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	12.11	16.6	19.97	28.15	31.09	33.87	21.26	26.92	26.36	19.08	44.72	20.99
Merged-chr15-67905458-2	chr15	67905342	67905542	+	988.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	353414.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.25	10.06	4.56	2.41	31.91	44.84	13.29	15.73	15.74	22.59	12.56	5.64
Merged-chr10-29338849-3	chr10	29338759	29338959	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110195, intron 5 of 5)	intron (NM_001110195, intron 5 of 5)	18854.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	12.52	34.21	30.23	30.57	30.27	31.98	15.61	42.06	53.7	40.67	35.68	33.83
Merged-chr11-95827684-3	chr11	95827589	95827789	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	3189.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	16.15	11.07	5.7	5.23	17.18	14.11	8.64	14.78	15.54	16.07	18.09	11.59
Merged-chr9-98333377-3	chr9	98333269	98333469	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	36799.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.65	8.3	13.69	21.72	25.36	21.32	30.56	38.83	21.64	16.07	19.09	19.74
Merged-chr2-170345669-3	chr2	170345576	170345776	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10685.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	28.27	22.13	27.95	17.7	25.36	15.99	17.27	27.93	24.0	17.57	37.69	18.17
Merged-chr2-38497756-3	chr2	38497655	38497855	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13942.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	14.13	26.91	35.94	28.96	25.36	30.1	16.61	24.64	48.58	46.19	43.72	26.31
Merged-chr15-59816334-3	chr15	59816223	59816423	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-21364.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	12.52	17.61	30.8	13.27	27.41	15.99	22.59	40.4	31.86	19.58	28.64	26.63
Merged-chr19-58116502-3	chr19	58116401	58116601	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65334.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	14.94	16.85	23.39	18.5	18.0	23.52	15.94	21.17	17.7	15.06	21.1	12.53
Merged-chr10-60282834-3	chr10	60282738	60282938	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-1623.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	29.48	18.11	44.5	38.21	31.91	15.68	47.17	50.47	52.12	24.6	59.29	41.04
Merged-chr9-45298266-3	chr9	45298175	45298375	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20825.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	16.96	19.62	29.66	13.67	16.77	26.03	10.63	18.87	24.78	22.09	28.64	26.63
Merged-chr4-65604985-3	chr4	65604861	65605061	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	-25.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	15.75	16.6	13.12	23.33	44.18	38.57	38.53	36.84	42.48	45.69	74.37	31.64
Merged-chr7-126695354-3	chr7	126695255	126695455	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175103)	promoter-TSS (NM_175103)	428.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	17.77	9.56	15.4	19.31	35.18	21.95	13.95	22.6	27.73	33.14	35.68	21.93
Merged-chr14-66846613-3	chr14	66846514	66846714	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21986.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	31.5	19.62	19.4	22.93	49.91	29.79	14.28	21.67	65.1	80.84	105.52	26.94
Merged-chr13-54504250-3	chr13	54504181	54504381	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176987, intron 1 of 9)	CpG	476.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	14.94	11.57	17.68	18.1	11.05	10.35	15.28	12.34	15.74	12.55	18.09	12.22
Merged-chr7-92903817-3	chr7	92903728	92903928	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 2 of 8)	intron (NM_028243, intron 2 of 8)	28575.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	24.23	12.58	15.4	15.69	20.46	22.26	12.29	19.37	22.23	39.67	29.65	21.3
Merged-chr9-116161079-3	chr9	116160999	116161199	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	14264.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	11.71	11.82	15.97	14.48	10.64	10.35	16.61	26.1	23.41	20.59	32.16	17.54
Merged-chr11-3199102-8	chr11	3199104	3199304	+	988.430542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3149.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	8.88	14.09	5.13	10.86	22.5	20.07	28.57	24.76	35.4	49.21	29.65	37.91
Merged-chr15-84351492-3	chr15	84351384	84351584	+	988.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25365.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	9.29	12.58	18.25	17.7	22.5	13.48	36.54	46.4	27.93	36.65	31.15	20.68
Merged-chr4-98436982-3	chr4	98436888	98437088	+	988.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25961.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	9.29	18.61	17.68	28.96	28.23	22.58	27.24	18.39	28.72	30.13	30.65	13.78
Merged-chr8-57800555-3	chr8	57800441	57800641	+	988.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-147486.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	33.52	17.86	21.11	22.52	14.73	25.4	12.29	16.51	42.09	45.69	28.14	9.4
Merged-chr8-18564807-3	chr8	18564715	18564915	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30316.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	24.23	32.45	18.83	20.91	30.68	19.44	22.92	46.96	12.39	25.61	22.11	21.62
Merged-chr1-170868673-3	chr1	170868560	170868760	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-889.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	21.4	19.12	11.98	21.32	29.46	31.36	16.28	14.64	28.13	32.13	32.16	19.42
Merged-chr14-122913082-3	chr14	122912972	122913172	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155287)	promoter-TSS (NR_155287)	42.0	NR_155286	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	22.61	25.15	15.4	23.73	37.64	13.8	37.54	34.82	19.08	26.11	23.62	10.65
Merged-chr3-21841014-3	chr3	21840975	21841175	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-235577.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	16.56	11.32	12.55	6.84	18.41	19.76	22.92	19.51	18.1	15.06	23.11	10.02
Merged-chr7-45370658-3	chr7	45370553	45370753	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011698)	promoter-TSS (NM_011698)	-89.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	33.11	19.62	22.82	12.07	39.68	30.1	17.27	27.48	27.34	31.63	33.16	18.17
Merged-chr8-95001846-3	chr8	95001749	95001949	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	-15843.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	23.42	15.59	15.4	12.87	29.46	30.73	12.95	18.17	24.98	34.65	27.13	16.29
Merged-chr6-32479615-6	chr6	32479477	32479677	+	988.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31564.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	18.98	17.36	11.98	10.86	16.77	21.32	7.97	11.1	12.19	19.58	8.54	8.46
Merged-chr9-54734075-2	chr9	54733968	54734168	+	988.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025376, intron 1 of 10)	intron (NM_001025376, intron 1 of 10)	481.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	16.56	15.09	14.83	6.03	19.64	14.11	7.31	12.7	12.0	4.02	21.61	14.41
Merged-chr16-59600395-3	chr16	59600306	59600506	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36539.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	14.94	20.37	14.26	14.08	22.09	13.48	13.62	22.37	13.57	13.05	20.6	14.72
Merged-chr5-36575363-1	chr5	36575263	36575463	+	988.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7034.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.04	1.76	3.99	0.8	1.64	1.88	2.33	3.34	18.49	10.54	18.09	12.22
Merged-chr13-8643502-1	chr13	8643402	8643602	+	988.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	227542.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	8.08	0.0	5.7	2.82	16.77	11.6	16.28	20.52	9.83	6.53	5.53	3.13
Merged-chr2-89117477-3	chr2	89117373	89117573	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4963.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	19.79	13.08	29.09	18.5	15.55	20.38	20.26	34.65	24.78	27.62	34.17	12.53
Merged-chr13-98761957-3	chr13	98761845	98762045	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 11 of 25)	intron (NM_172591, intron 11 of 25)	53504.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	25.84	11.82	18.83	21.72	15.96	11.29	11.63	15.59	23.01	27.11	24.62	15.98
Merged-chr16-64935097-1	chr16	64934997	64935197	+	988.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008310, intron 2 of 2)	MLT1A1|LTR|ERVL-MaLR	83096.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.81	1.01	0.0	0.4	0.0	0.63	0.0	0.34	13.57	20.08	23.62	20.68
Merged-chr9-21164155-3	chr9	21164042	21164242	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1572.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	14.13	11.57	15.4	3.62	18.41	21.01	14.28	10.51	16.13	23.1	21.1	13.47
Merged-chr1-15799122-3	chr1	15799017	15799217	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6529.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	32.71	42.26	50.2	25.34	28.23	33.55	19.93	29.02	13.77	14.06	18.09	5.95
Merged-chr3-148325146-3	chr3	148325029	148325229	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	629506.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	14.94	12.32	35.37	21.32	21.27	15.68	17.27	29.05	28.91	25.61	29.65	10.02
Merged-chr6-142715088-3	chr6	142714995	142715195	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12821.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	6.46	7.8	14.83	14.88	28.23	17.25	27.57	45.42	20.85	17.57	40.2	24.12
Merged-chr5-24424247-1	chr5	24424147	24424347	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	-717.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	18.98	11.82	17.11	13.27	19.64	13.17	9.63	11.8	12.59	20.08	16.58	19.11
Merged-chr2-103627379-3	chr2	103627293	103627493	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	B3|SINE|B2	61083.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	26.25	26.66	31.95	43.84	33.96	26.03	25.91	23.55	23.21	15.06	10.05	11.9
Merged-chr6-86525654-6	chr6	86525573	86525773	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	516.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	10.09	9.31	10.84	12.87	18.41	23.52	18.6	10.57	27.93	32.13	28.14	23.18
Merged-chr9-118705762-3	chr9	118705648	118705848	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 15 of 27)	MTD|LTR|ERVL-MaLR	-5944.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.94	5.79	13.12	13.67	19.64	10.35	20.59	25.57	34.62	25.11	82.91	36.03
Merged-chr12-83950664-3	chr12	83950586	83950786	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	78.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	25.44	22.64	12.55	28.15	21.68	36.06	12.95	19.54	28.32	29.12	29.14	19.11
Merged-chr1-136569559-6	chr1	136569474	136569674	+	988.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-55327.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	8.48	12.32	16.54	15.28	8.59	8.15	9.97	13.49	21.24	11.55	19.09	11.9
Merged-chr4-126815101-3	chr4	126815000	126815200	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	61330.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	22.61	11.57	22.82	21.32	21.27	38.57	41.85	37.09	25.96	21.09	18.59	16.92
Merged-chr8-115582239-3	chr8	115582154	115582354	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	124640.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	31.5	12.58	14.83	30.57	45.0	27.28	55.8	55.35	23.01	23.1	28.64	16.6
Merged-chr11-21015117-3	chr11	21015074	21015274	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76150.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	15.34	20.63	19.4	10.86	20.46	25.09	14.62	17.07	29.7	27.11	19.09	13.16
Merged-chr6-83268403-3	chr6	83268294	83268494	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166067, intron 10 of 24)	intron (NM_001166067, intron 10 of 24)	31019.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	15.75	21.88	15.4	24.13	14.73	21.01	25.24	18.06	17.31	7.53	14.57	13.16
Merged-chr14-32812623-3	chr14	32812525	32812725	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163616, intron 4 of 4)	intron (NM_001163616, intron 4 of 4)	-21337.0	NM_001164485	105511.0	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	24.23	21.88	22.25	12.07	25.77	31.36	9.97	28.09	19.67	18.08	23.62	4.7
Merged-chr13-49183934-3	chr13	49183832	49184032	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3615.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	13.73	20.37	18.83	12.87	29.86	35.12	32.88	29.97	39.93	55.23	52.76	24.75
Merged-chr5-122637095-2	chr5	122636997	122637197	+	988.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6814.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	21.4	11.57	17.68	7.24	24.55	23.2	11.63	20.61	5.9	4.52	8.04	2.82
Merged-chr11-106920727-4	chr11	106920551	106920751	+	988.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025481)	promoter-TSS (NM_025481)	64.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	34.32	26.41	11.41	38.61	38.05	42.33	47.17	22.15	28.13	54.73	26.13	16.29
Merged-chr16-21310977-3	chr16	21310905	21311105	+	988.246033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14133.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	26.25	17.86	12.55	23.33	25.77	16.31	10.63	20.97	20.85	23.6	25.63	13.16
Merged-chr2-180705306-3	chr2	180705198	180705398	+	988.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-3196.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	14.94	15.59	25.67	32.18	20.86	16.31	23.58	23.1	23.6	20.59	27.64	21.62
Merged-chr13-52822890-3	chr13	52822797	52822997	+	988.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65692.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	13.33	17.36	43.35	18.1	51.14	42.33	53.15	53.33	33.63	44.69	50.75	24.12
Merged-chr10-80692953-3	chr10	80692831	80693031	+	988.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8889.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	20.59	13.08	6.85	8.85	27.41	22.26	14.62	18.08	17.31	21.59	13.57	19.42
Merged-chr15-75085626-3	chr15	75085540	75085740	+	988.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	26297.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	56.13	47.54	63.32	43.44	36.0	36.06	49.16	11.89	39.73	56.74	48.24	87.71
Merged-chr1-65089201-3	chr1	65089114	65089314	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6924.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	14.94	12.07	22.25	12.47	37.23	57.7	21.59	44.24	35.99	37.66	33.16	26.0
Merged-chr13-67082230-3	chr13	67082135	67082335	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012448)	promoter-TSS (NM_001012448)	-690.0	NM_001292066	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	27.86	19.87	13.12	17.29	22.5	26.97	18.6	18.48	28.91	26.11	30.65	17.86
Merged-chr14-43921923-3	chr14	43921823	43922023	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053112)	TTS (NM_053112)	1445.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	25.04	19.62	19.97	36.6	39.27	26.97	28.23	24.53	38.16	31.63	34.17	19.42
Merged-chr12-79156985-3	chr12	79156878	79157078	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009705)	TTS (NM_009705)	15480.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	14.94	13.33	27.95	24.94	76.91	76.2	60.79	86.55	28.13	28.12	50.25	27.88
Merged-chr12-104236092-3	chr12	104235986	104236186	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001353613)	promoter-TSS (NM_001353613)	-61.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	34.73	31.94	26.24	14.88	12.27	25.4	12.95	11.33	47.01	32.13	26.63	16.6
Merged-chr11-94548454-3	chr11	94548360	94548560	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013381, intron 2 of 8)	intron (NM_001013381, intron 2 of 8)	747.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	24.63	26.91	13.69	7.24	31.09	33.87	26.57	18.42	25.37	20.59	27.13	15.66
Merged-chr12-73589318-3	chr12	73589217	73589417	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	L1ME2|LINE|L1	4521.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	13.33	23.14	25.1	30.16	18.41	15.05	18.6	29.72	14.95	3.51	22.11	13.16
Merged-chr1-55026133-3	chr1	55026046	55026246	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	1332.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	29.48	29.68	37.65	22.52	36.41	52.99	25.91	24.06	39.93	33.14	48.24	12.22
Merged-chr15-28159122-3	chr15	28158991	28159191	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44675.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	9.29	14.09	17.68	22.52	31.91	19.76	18.93	25.82	16.13	14.56	40.7	12.53
Merged-chr1-52726929-3	chr1	52726845	52727045	+	988.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357464, intron 1 of 7)	CpG	373.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	14.54	19.62	9.7	13.67	25.77	15.68	19.6	18.0	16.92	26.11	21.1	8.46
Merged-chr4-139614670-3	chr4	139614553	139614753	+	988.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 7 of 8)	intron (NM_001205173, intron 7 of 8)	-8241.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	42.8	30.43	34.23	13.27	12.27	11.92	8.97	11.64	31.86	29.12	24.62	15.66
Merged-chr12-12263566-3	chr12	12263449	12263649	+	988.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	1410.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	23.82	18.36	11.98	19.31	24.96	19.13	15.28	17.13	35.21	21.59	36.68	17.23
Merged-chr18-46599068-3	chr18	46598939	46599139	+	988.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	1335.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	30.69	38.48	30.8	21.32	24.96	26.65	15.94	18.42	57.24	41.17	20.1	26.0
Merged-chr16-94625931-3	chr16	94625816	94626016	+	988.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	14497.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	14.13	12.83	17.68	14.08	9.0	15.68	14.62	11.3	19.47	14.06	14.07	14.41
Merged-chr1-34464413-1	chr1	34464313	34464513	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	4667.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	18.17	18.86	23.39	14.08	20.46	20.38	10.63	16.04	28.72	18.58	19.09	15.66
Merged-chr4-32555772-3	chr4	32555668	32555868	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	L1MA9|LINE|L1	15894.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	21.8	19.12	31.95	65.16	39.68	43.27	76.07	105.79	35.8	14.06	62.31	32.89
Merged-chr10-53374383-3	chr10	53374272	53374472	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204983, intron 1 of 12)	L2a|LINE|L2	5479.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	12.92	18.36	17.68	20.91	18.41	11.6	15.28	31.93	17.7	15.06	31.66	10.96
Merged-chr7-145264353-1	chr7	145264253	145264453	+	988.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 13 of 22)	LTR41B|LTR|ERVL	19658.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.21	1.76	4.56	4.42	20.86	15.05	11.96	23.33	7.08	1.0	5.53	5.01
Merged-chr17-32193208-2	chr17	32193122	32193322	+	988.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-3752.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	3.63	7.29	4.56	2.82	5.32	9.72	5.65	9.36	14.55	8.54	24.12	16.29
Merged-chr11-9337353-3	chr11	9337249	9337449	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	145407.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	20.19	17.1	16.54	14.08	28.64	40.76	15.94	26.89	55.66	57.74	59.29	36.34
Merged-chr1-43466130-3	chr1	43466040	43466240	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20389.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	14.54	9.56	6.28	7.64	26.18	17.87	9.63	27.06	27.34	22.09	24.62	22.87
Merged-chr2-68793747-3	chr2	68793643	68793843	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67698.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	25.44	21.38	21.11	15.69	31.91	65.54	13.95	25.07	30.49	48.2	31.15	17.86
Merged-chr8-46928888-3	chr8	46928793	46928993	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57994.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	20.59	13.58	27.38	21.72	11.05	23.2	20.59	19.46	20.65	17.57	30.15	22.87
Merged-chr9-110997433-3	chr9	110997306	110997506	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-7693.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	14.13	13.33	13.69	20.51	20.05	22.58	8.97	26.47	32.26	31.13	43.72	9.71
Merged-chr8-115570512-3	chr8	115570422	115570622	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136372.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	15.75	20.63	25.1	12.87	19.23	38.88	28.9	26.58	36.78	40.67	31.66	7.83
Merged-chr8-80315007-3	chr8	80314901	80315101	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179044.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	21.8	20.63	33.66	43.44	54.41	33.24	42.85	45.7	26.36	47.2	35.17	14.1
Merged-chr1-144007558-3	chr1	144007458	144007658	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3409.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	21.4	15.34	23.96	21.32	28.64	23.83	12.62	27.31	18.88	15.57	25.63	10.34
Merged-chr5-25011299-3	chr5	25011210	25011410	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-15557.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	17.36	15.85	12.55	15.69	24.55	28.22	12.62	27.67	42.09	35.65	34.67	23.81
Merged-chr9-64771385-3	chr9	64771263	64771463	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33607.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	22.61	15.85	51.34	45.05	43.36	24.77	55.47	64.49	24.19	16.07	24.62	20.68
Merged-chr2-103604413-3	chr2	103604311	103604511	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	38101.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	26.25	25.15	34.8	24.53	14.32	31.67	23.25	38.5	30.68	28.12	52.26	23.49
Merged-chr13-23584492-3	chr13	23584359	23584559	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178194, exon 2 of 2)	3' UTR (NM_178194, exon 2 of 2)	1511.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	16.15	12.83	6.28	15.69	12.27	13.48	9.3	12.22	13.57	20.59	22.11	15.66
Merged-chr2-160269509-3	chr2	160269389	160269589	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58005.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	18.17	11.07	43.35	28.96	24.96	20.7	26.91	54.5	20.46	18.08	32.66	17.23
Merged-chr6-72735363-3	chr6	72735256	72735456	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	53689.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	21.8	17.61	30.23	21.32	27.41	21.32	20.26	40.12	36.78	17.57	54.77	34.77
Merged-chr11-54028188-3	chr11	54028079	54028279	+	987.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-75.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	28.27	13.83	25.1	12.07	25.36	38.57	19.6	24.98	16.52	34.65	31.66	8.77
Merged-chr12-80064005-2	chr12	80063890	80064090	+	987.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49023.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.27	6.79	7.42	8.04	29.05	30.42	31.89	25.79	17.51	20.59	23.11	10.96
Merged-chr1-165643209-3	chr1	165643102	165643302	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8661.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	16.56	14.09	14.26	16.49	19.23	15.99	21.59	18.73	21.24	21.09	34.67	17.23
Merged-chr13-73461685-3	chr13	73461597	73461797	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5686.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	12.52	15.59	19.97	14.88	15.96	12.86	15.61	23.5	22.03	7.03	18.09	10.02
Merged-chr4-14865647-3	chr4	14865562	14865762	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	1443.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	25.44	25.15	12.55	9.65	42.14	42.96	18.6	19.49	42.29	32.13	28.14	21.93
Merged-chr18-46963598-3	chr18	46963501	46963701	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4725.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	13.33	22.89	21.68	39.01	28.23	34.49	21.59	43.6	20.65	15.06	34.17	19.42
Merged-chr1-180884445-3	chr1	180884338	180884538	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8670.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	4.85	16.6	19.97	13.67	4.91	14.42	13.62	11.33	17.9	20.08	19.6	10.65
Merged-chr4-117836614-4	chr4	117836500	117836700	+	987.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008135, intron 1 of 13)	CpG	1342.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	23.42	24.15	14.83	36.6	32.32	31.36	15.28	26.64	28.91	30.63	23.62	30.07
Merged-chr11-69036008-3	chr11	69035898	69036098	+	987.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281465, intron 22 of 22)	intron (NM_001281465, intron 22 of 22)	-9639.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	26.25	21.38	7.99	15.28	16.36	26.03	10.63	14.27	20.85	32.13	32.66	11.28
Merged-chr15-76198822-3	chr15	76198759	76198959	+	987.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	547.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	55.72	30.69	38.22	11.66	37.23	54.88	32.88	25.37	32.85	42.18	32.66	20.99
Merged-chr4-53806630-2	chr4	53806516	53806716	+	987.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19429.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	18.98	8.05	22.25	33.78	12.68	13.48	25.91	11.07	2.56	5.52	4.52	0.0
Merged-chr5-139405686-3	chr5	139405580	139405780	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-707.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	10.5	17.36	15.4	18.9	13.09	21.01	28.57	28.99	22.62	16.07	34.17	26.94
Merged-chr11-53560149-1	chr11	53560049	53560249	+	987.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7220.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	9.69	5.53	11.41	13.67	14.32	33.55	20.26	10.88	8.65	8.03	21.61	6.58
Merged-chr7-4925127-3	chr7	4925024	4925224	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-720.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	18.17	9.81	14.83	11.66	20.05	17.25	10.63	14.89	33.63	35.65	32.16	20.36
Merged-chr3-20018241-3	chr3	20018131	20018331	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 8 of 16)	MTD|LTR|ERVL-MaLR	17079.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	18.57	16.6	10.84	19.71	24.55	22.26	16.94	23.3	22.42	15.06	41.2	12.84
Merged-chr13-74807967-3	chr13	74807825	74808025	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	35.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	14.54	17.86	17.68	14.08	31.09	25.09	24.58	33.06	38.55	34.65	85.42	20.68
Merged-chr6-67267480-2	chr6	67267383	67267583	+	987.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113565, intron 1 of 7)	CpG	504.0	NM_025814	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	11.31	11.57	18.83	7.24	17.18	12.54	20.26	17.07	12.0	10.54	19.09	26.31
Merged-chr18-12955927-4	chr18	12955867	12956067	+	987.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14126.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	13.33	16.85	10.27	15.28	12.68	17.56	13.95	9.22	15.14	10.04	12.56	28.19
Merged-chr15-96287551-4	chr15	96287576	96287776	+	987.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175251, exon 1 of 21)	5' UTR (NM_175251, exon 1 of 21)	154.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	17.36	22.64	13.69	16.09	21.27	21.95	17.94	15.56	13.77	19.58	19.6	19.74
Merged-chr5-110387108-3	chr5	110387000	110387200	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	27.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	25.04	19.87	32.52	14.08	16.36	23.83	12.29	17.44	19.87	19.08	34.17	10.65
Merged-chr10-10408346-3	chr10	10408246	10408446	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63968.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	23.82	29.18	21.68	28.56	25.36	21.01	14.95	25.32	24.98	21.09	26.13	12.22
Merged-chr12-80435169-3	chr12	80435106	80435306	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177267, intron 1 of 8)	CpG	1395.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	16.15	22.13	24.53	6.44	16.77	29.48	10.63	8.07	34.42	29.12	30.65	20.68
Merged-chr12-85885203-3	chr12	85885090	85885290	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 12 of 32)	MTD|LTR|ERVL-MaLR	60240.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	19.38	5.53	31.38	24.94	36.41	6.27	17.27	29.27	15.74	13.56	21.61	11.28
Merged-chr10-95533533-3	chr10	95533431	95533631	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	18369.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	21.4	16.6	7.99	6.44	15.55	19.76	17.27	12.56	26.16	24.6	18.09	4.07
Merged-chr13-100408464-3	chr13	100408366	100408566	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008670, exon 16 of 16)	3' UTR (NM_008670, exon 16 of 16)	44398.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	33.52	19.12	35.37	18.9	48.27	74.32	49.16	69.93	21.83	15.06	40.7	18.48
Merged-chr12-73304860-3	chr12	73304784	73304984	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	18036.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	32.71	18.11	37.08	15.28	12.27	26.34	20.59	23.3	26.95	18.08	32.66	11.28
Merged-chr7-88128649-3	chr7	88128555	88128755	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-149430.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	14.94	20.63	21.11	19.31	14.73	36.37	20.59	19.88	27.73	29.62	34.67	5.01
Merged-chr1-179645894-3	chr1	179645780	179645980	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-22351.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	16.96	25.4	15.97	19.71	26.18	31.67	21.92	39.2	20.65	28.12	40.2	23.81
Merged-chr8-70213194-3	chr8	70213075	70213275	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-894.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	31.09	22.39	58.19	46.66	31.09	24.46	6.98	27.87	60.58	49.71	84.42	36.65
Merged-chr6-127258882-3	chr6	127258765	127258965	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49102.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	27.05	24.65	45.07	36.2	19.64	16.93	21.26	31.79	16.92	27.62	23.11	12.22
Merged-chr4-72200016-4	chr4	72199897	72200097	+	987.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001285529, exon 1 of 20)	exon (NM_001285529, exon 1 of 20)	896.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	18.57	20.12	10.84	18.1	14.32	11.92	27.24	24.93	13.96	28.62	23.11	21.3
Merged-chr5-38480224-3	chr5	38480101	38480301	+	987.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001102414, exon 1 of 12)	5' UTR (NM_001102414, exon 1 of 12)	105.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	12.52	18.86	9.7	14.88	18.0	23.2	21.92	14.61	18.69	29.62	45.73	23.18
Merged-chr7-80628850-3	chr7	80628738	80628938	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-7179.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	7.27	19.37	20.54	13.27	31.09	10.66	17.94	20.69	15.14	17.57	34.67	12.22
Merged-chr12-99616373-3	chr12	99616291	99616491	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 2 of 3)	MLTR14|LTR|ERV1	11583.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	13.73	16.35	51.34	23.33	26.18	17.56	21.92	34.15	39.73	35.65	41.71	18.17
Merged-chr7-110372708-3	chr7	110372619	110372819	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 19 of 40)	intron (NM_177324, intron 19 of 40)	151016.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	21.4	12.83	32.52	45.85	20.05	12.86	20.59	39.28	31.47	17.57	29.65	28.82
Merged-chr12-80785246-3	chr12	80785155	80785355	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5277.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	12.11	18.61	18.83	28.56	15.14	14.42	21.26	19.26	31.67	28.62	33.16	14.1
Merged-chr7-29769901-3	chr7	29769787	29769987	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	1335.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	41.19	22.89	24.53	34.19	13.5	20.38	17.61	16.99	17.7	15.57	21.1	19.11
Merged-chr7-109838812-3	chr7	109838705	109838905	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020052, intron 7 of 21)	intron (NM_020052, intron 7 of 21)	26874.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	39.57	61.37	51.34	70.38	20.05	30.1	22.26	33.84	55.66	17.07	46.73	38.53
Merged-chr5-64835477-3	chr5	64835383	64835583	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31960.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	32.71	23.39	22.25	19.31	45.82	25.71	18.93	21.22	34.22	25.61	36.68	11.59
Merged-chr11-34773714-3	chr11	34773557	34773757	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	10248.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	8.48	7.04	13.12	10.46	15.96	8.78	8.3	17.75	14.36	7.03	14.57	14.41
Merged-chr11-77520789-3	chr11	77520713	77520913	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026185)	TTS (NM_026185)	5696.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	25.44	17.86	19.97	16.09	27.41	30.42	16.61	20.61	34.62	46.19	21.61	15.98
Merged-chr7-80027141-3	chr7	80027097	80027297	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	CpG	969.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	15.34	15.09	13.12	25.74	14.73	11.6	20.93	8.97	14.95	8.03	12.56	12.84
Merged-chr13-47215113-3	chr13	47215033	47215233	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21130.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	17.77	8.3	22.82	19.31	17.59	13.48	13.62	16.54	27.93	25.61	26.13	16.6
Merged-chr11-76589317-3	chr11	76589181	76589381	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11542.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	21.4	14.59	15.97	9.65	27.82	49.86	31.22	18.03	40.12	41.17	38.69	10.34
Merged-chr10-62199142-3	chr10	62199018	62199218	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-4891.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	14.13	5.28	23.96	24.94	21.68	17.56	34.88	36.93	21.44	5.52	19.6	13.78
Merged-chr2-77238791-3	chr2	77238712	77238912	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	41780.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	22.21	22.89	31.95	44.24	14.73	22.58	22.92	43.32	37.37	15.57	31.15	34.77
Merged-chr2-177206497-3	chr2	177206397	177206597	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	205541.0	NM_001362250	628147.0	Mm.374080	NM_001362250		Gm2004	100039000	predicted gene 2004	protein-coding	13.73	17.86	22.25	26.55	32.73	37.0	25.58	16.15	52.91	51.21	69.85	28.51
Merged-chr8-13647858-3	chr8	13647779	13647979	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29708.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	25.04	23.9	31.95	54.3	35.59	21.32	21.26	47.44	21.64	15.57	24.12	20.68
Merged-chr12-31967754-3	chr12	31967663	31967863	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 6 of 10)	intron (NM_011158, intron 6 of 10)	-17518.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	25.84	15.85	23.96	23.33	15.55	19.13	8.97	14.44	24.59	22.09	33.16	19.42
Merged-chr7-35064468-2	chr7	35064393	35064593	+	987.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7927.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	8.88	7.55	7.99	7.64	22.5	28.85	20.93	20.89	11.41	20.08	18.59	14.1
Merged-chr18-46613369-2	chr18	46613268	46613468	+	987.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15664.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	7.67	5.53	11.98	12.07	24.96	16.62	15.94	35.69	26.16	14.56	20.6	8.46
Merged-chr15-34047120-2	chr15	34047014	34047214	+	987.616699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35605.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	9.69	15.85	6.28	9.65	22.5	30.73	11.63	10.12	33.44	45.69	27.64	10.34
Merged-chr18-70531029-3	chr18	70530940	70531140	+	987.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	-719.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	27.86	15.59	14.83	13.27	12.68	16.62	10.96	12.98	39.53	19.58	23.11	18.8
Merged-chr3-27863533-3	chr3	27863424	27863624	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32844.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	29.07	26.16	33.09	20.91	40.09	53.62	32.55	29.92	41.89	54.73	58.29	12.53
Merged-chr2-60046223-3	chr2	60046114	60046314	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	79526.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	16.15	20.63	22.82	39.01	16.36	24.77	25.24	37.85	29.31	18.08	21.1	19.42
Merged-chr12-111166122-3	chr12	111166003	111166203	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	-267.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	18.17	14.59	22.82	12.07	29.86	21.64	9.3	15.53	44.06	48.7	28.14	28.82
Merged-chr2-143093863-3	chr2	143093740	143093940	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15447.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	52.09	41.25	66.17	67.17	29.46	15.99	20.59	35.66	16.92	10.54	33.67	13.16
Merged-chr2-130490992-3	chr2	130490915	130491115	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	40737.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	21.8	13.08	17.11	13.67	27.41	16.62	24.25	29.1	21.83	36.65	33.67	21.93
Merged-chr19-56727356-3	chr19	56727248	56727448	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4976.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	17.77	8.8	23.96	13.27	41.73	29.16	20.59	25.85	27.54	25.11	33.16	12.53
Merged-chr13-44869619-3	chr13	44869525	44869725	+	987.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	132471.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	46.44	68.92	55.33	61.54	19.23	22.58	15.94	7.09	27.54	22.09	19.09	37.91
Merged-chr11-103019060-2	chr11	103018945	103019145	+	987.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1898.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	5.65	8.8	2.28	4.02	16.77	28.85	34.88	37.68	22.03	15.06	39.19	24.75
Merged-chr8-70608459-3	chr8	70608408	70608608	+	987.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133772)	promoter-TSS (NM_133772)	-194.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	17.36	21.63	12.55	10.46	22.5	20.07	11.29	11.1	33.24	47.2	32.66	35.09
Merged-chr1-163758020-3	chr1	163757916	163758116	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21567.0	NM_001305643	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	14.13	6.29	21.68	2.82	15.14	17.56	10.63	15.22	32.45	7.03	24.62	6.58
Merged-chr13-21974329-3	chr13	21974227	21974427	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6854.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	30.69	26.66	11.98	27.35	27.41	25.71	12.29	27.98	28.72	37.66	33.16	33.83
Merged-chr15-67479488-3	chr15	67479379	67479579	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	252710.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	31.9	15.59	13.12	4.42	30.68	40.14	5.65	26.47	26.16	26.11	23.62	17.86
Merged-chr7-75701961-3	chr7	75701869	75702069	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-146369.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	19.38	9.31	16.54	18.1	15.55	13.48	14.95	18.62	18.49	13.05	17.08	8.77
Merged-chr6-31077501-3	chr6	31077394	31077594	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	17.77	12.58	14.26	14.08	18.41	25.09	15.61	23.44	24.0	14.56	27.64	18.17
Merged-chr4-132748935-3	chr4	132748851	132749051	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	8220.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	36.75	32.45	38.22	8.04	16.36	60.52	15.61	10.37	33.24	25.11	25.12	16.6
Merged-chr19-12011787-3	chr19	12011717	12011917	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24923.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	18.17	35.72	23.39	29.36	17.59	30.73	21.92	20.89	15.93	16.07	20.1	13.78
Merged-chr11-116784403-3	chr11	116784290	116784490	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8883.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	78.34	56.59	61.04	74.0	57.68	53.31	36.87	56.61	16.52	7.03	16.58	12.53
Merged-chr11-104231322-3	chr11	104231230	104231430	+	987.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010838)	promoter-TSS (NM_010838)	-106.0	NM_001038609	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	55.72	52.07	45.64	45.05	20.05	32.61	19.93	26.78	28.32	26.61	18.59	15.35
Merged-chr8-107478162-3	chr8	107478061	107478261	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025830, intron 4 of 23)	intron (NM_025830, intron 4 of 23)	41763.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	24.63	19.62	43.35	27.35	22.91	17.56	12.29	29.07	20.26	12.05	16.08	15.35
Merged-chr5-99248139-3	chr5	99248078	99248278	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	B3A|SINE|B2	4749.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	14.13	15.09	14.83	5.63	17.18	28.22	11.63	13.12	25.96	14.06	31.15	17.54
Merged-chr15-6705755-3	chr15	6705654	6705854	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2627.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	14.54	20.88	34.23	21.72	14.32	20.38	12.29	20.55	25.18	27.11	25.12	8.14
Merged-chr6-108214733-3	chr6	108214643	108214843	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1647.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	18.98	15.85	29.09	17.29	22.91	25.4	10.96	28.82	24.0	23.1	24.12	10.34
Merged-chr3-109341749-3	chr3	109341646	109341846	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1063.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	21.8	13.08	18.83	21.72	14.32	13.8	13.29	21.39	15.54	17.57	22.11	9.4
Merged-chr11-29692223-3	chr11	29692115	29692315	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-683.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	44.01	25.4	33.66	20.11	59.73	48.29	44.18	39.25	29.11	51.72	17.59	25.37
Merged-chr4-8515650-3	chr4	8515556	8515756	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19988.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	31.5	22.13	41.64	39.42	13.09	22.58	15.28	23.19	9.64	14.06	16.08	10.96
Merged-chr16-4920795-3	chr16	4920708	4920908	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 9 of 17)	intron (NM_001357062, intron 9 of 17)	-18303.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	20.19	12.83	21.68	24.53	16.77	22.58	13.95	19.99	28.91	15.57	22.61	18.48
Merged-chr1-60974953-3	chr1	60974854	60975054	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2960.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	12.52	8.3	30.8	22.93	32.32	34.81	27.57	33.73	26.16	38.66	39.19	25.69
Merged-chr2-180276065-3	chr2	180275974	180276174	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2609.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	15.75	11.32	16.54	12.87	38.46	26.97	16.28	26.89	18.1	19.08	30.65	13.78
Merged-chr7-81199960-3	chr7	81199860	81200060	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13844.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	11.31	9.81	24.53	19.71	31.91	27.91	27.57	37.43	32.45	23.6	53.77	19.42
Merged-chr7-24531411-3	chr7	24531316	24531516	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	768.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	28.67	25.4	21.11	7.24	17.18	47.35	16.94	4.65	30.68	31.13	16.08	4.39
Merged-chr12-84176334-3	chr12	84176255	84176455	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17660.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	29.07	23.9	40.5	12.07	37.23	38.26	21.26	15.7	36.78	28.12	32.66	13.16
Merged-chr7-127777681-2	chr7	127777579	127777779	+	987.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178029, intron 1 of 18)	CpG	290.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	21.8	11.82	20.54	15.28	22.91	11.92	12.95	10.35	18.1	15.57	11.56	10.65
Merged-chr8-61451073-2	chr8	61450988	61451188	+	987.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36646.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	8.08	2.01	0.0	2.01	42.14	35.43	17.94	31.79	47.4	31.63	40.2	12.22
Merged-chr5-20932802-3	chr5	20932697	20932897	+	987.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	PB1|SINE|Alu	-18192.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	33.52	29.43	15.97	32.58	21.27	26.65	20.26	34.26	26.36	29.12	17.59	16.29
Merged-chr15-74939468-3	chr15	74939382	74939582	+	987.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-15569.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	29.48	25.66	14.26	16.89	35.18	16.62	11.96	28.57	29.9	23.1	33.67	12.84
Merged-chr12-86242351-2	chr12	86242261	86242461	+	987.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	503.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	10.9	18.61	10.27	9.65	8.59	21.01	5.98	10.46	17.31	23.1	29.65	16.29
Merged-chr7-30265233-3	chr7	30265140	30265340	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146186, exon 9 of 33)	exon (NM_146186, exon 9 of 33)	-14854.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	16.15	14.59	13.12	25.74	29.46	14.74	23.58	36.93	18.69	16.57	44.22	24.75
Merged-chr19-29522959-3	chr19	29522843	29523043	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	661.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	13.33	15.34	12.55	18.1	15.14	23.52	23.58	19.96	20.85	35.65	27.13	29.13
Merged-chr14-102978809-4	chr14	102978721	102978921	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	3811.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	10.9	11.82	20.54	22.93	8.18	16.93	15.61	20.27	11.8	16.07	18.09	13.16
Merged-chr17-27027605-3	chr17	27027495	27027695	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1032.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	14.54	13.08	22.25	24.13	15.96	34.18	13.62	28.96	34.42	29.62	20.1	20.05
Merged-chr8-111234617-3	chr8	111234501	111234701	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	24601.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	27.05	12.32	29.66	12.07	27.0	18.81	9.63	29.61	45.04	28.12	29.14	17.23
Merged-chr6-33969394-3	chr6	33969274	33969474	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	MTD|LTR|ERVL-MaLR	-60074.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	14.13	23.39	57.05	39.01	28.64	33.87	45.18	51.06	51.93	37.66	71.35	37.91
Merged-chr12-55648308-3	chr12	55648209	55648409	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	49392.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	17.36	10.31	33.09	17.29	26.18	12.54	13.29	12.08	29.5	26.61	26.13	15.98
Merged-chr6-115718430-3	chr6	115718333	115718533	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40566.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	30.28	23.64	14.83	21.32	24.14	31.04	11.96	18.84	51.73	34.14	35.17	26.31
Merged-chr15-79446401-3	chr15	79446290	79446490	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4247.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	12.92	14.09	23.96	15.69	29.86	23.2	20.26	26.1	31.86	37.16	41.2	24.75
Merged-chr1-43501998-4	chr1	43501917	43502117	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	56266.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	10.5	4.78	6.28	8.04	7.36	15.37	14.95	11.92	13.37	8.54	21.1	6.27
Merged-chr1-134060997-3	chr1	134060908	134061108	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18147.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	26.25	14.84	15.4	24.13	55.64	34.81	40.86	49.35	48.39	34.14	61.3	21.3
Merged-chr19-10881700-3	chr19	10881589	10881789	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	54.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	22.61	24.9	31.38	22.52	24.14	19.44	10.63	17.13	15.74	20.08	14.07	15.04
Merged-chr11-68443502-3	chr11	68443421	68443621	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	11396.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	27.86	29.18	23.96	5.63	26.59	78.08	21.26	24.28	24.98	36.15	17.08	22.56
Merged-chr10-100881858-3	chr10	100881741	100881941	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-140206.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	27.86	12.32	13.69	33.78	18.82	15.05	28.9	33.36	34.62	26.61	55.78	18.17
Merged-chr9-51077214-3	chr9	51077136	51077336	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033534)	promoter-TSS (NM_001033534)	-142.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	50.47	25.91	15.97	15.28	46.23	95.95	19.27	30.9	15.34	27.62	23.62	12.84
Merged-chr13-76256581-3	chr13	76256480	76256680	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-128381.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	64.2	45.02	57.62	41.83	60.55	72.44	36.54	51.34	23.8	22.59	20.6	15.35
Merged-chr1-171057493-3	chr1	171057377	171057577	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	1917.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	27.86	17.1	43.93	29.76	38.86	31.04	25.58	42.67	41.3	19.58	52.26	28.82
Merged-chr13-41373033-3	chr13	41372917	41373117	+	987.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-14016.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	12.52	26.16	57.62	39.01	30.27	31.67	30.23	38.94	37.76	31.13	63.82	28.51
Merged-chr7-48998263-5	chr7	48998142	48998342	+	987.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39169.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	9.69	10.56	15.97	12.47	12.68	15.37	21.92	22.68	15.93	19.08	20.6	6.89
Merged-chr1-171502839-7	chr1	171502723	171502923	+	987.261902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-655.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	5.25	7.8	13.69	12.47	6.95	12.54	3.99	9.39	21.05	26.61	19.09	16.29
Merged-chr4-150913982-2	chr4	150913867	150914067	+	987.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4046.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	14.13	14.59	24.53	16.89	16.36	17.87	8.64	20.13	28.52	14.56	25.12	17.86
Merged-chr3-84666225-3	chr3	84666132	84666332	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177260)	promoter-TSS (NM_177260)	40.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	12.52	19.37	18.83	18.5	52.77	33.55	18.6	43.82	31.67	32.13	22.11	33.21
Merged-chr7-128237288-3	chr7	128237176	128237376	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146205)	promoter-TSS (NM_146205)	-81.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	19.79	12.58	15.97	13.27	21.68	34.81	8.3	21.28	21.24	29.12	24.12	12.84
Merged-chr3-157635854-3	chr3	157635758	157635958	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	68966.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	27.46	32.95	27.38	30.97	29.05	25.71	14.62	16.12	20.06	15.57	16.58	15.04
Merged-chr10-117822004-3	chr10	117821920	117822120	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 3 of 7)	intron (NM_024457, intron 3 of 7)	23954.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	12.11	26.16	7.99	22.93	28.23	29.16	20.26	33.03	34.42	27.11	22.61	17.23
Merged-chr13-5870959-3	chr13	5870852	5871052	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011803)	TTS (NM_011803)	9463.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	17.36	17.86	17.68	14.08	20.05	33.24	15.94	18.0	21.24	24.1	23.11	15.98
Merged-chr8-126824854-3	chr8	126824754	126824954	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24166.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	21.4	18.11	18.83	27.35	31.5	22.58	31.56	31.85	14.55	21.59	16.58	25.06
Merged-chr10-115328776-3	chr10	115328691	115328891	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER70B|LTR|ERVL	-13200.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	23.82	23.39	13.12	18.5	33.55	26.65	25.58	34.6	43.47	32.64	51.25	26.31
Merged-chr10-4346971-3	chr10	4346871	4347071	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	CpG	40504.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	18.17	13.58	23.96	12.07	29.46	25.09	17.94	30.36	37.76	28.62	47.74	18.8
Merged-chr11-17013127-3	chr11	17013025	17013225	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4407.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	16.15	13.08	12.55	19.71	12.27	18.81	17.27	16.12	22.42	7.03	38.69	12.22
Merged-chr6-6577807-3	chr6	6577705	6577905	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009169, intron 1 of 2)	MIRb|SINE|MIR	853.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	12.11	12.83	31.95	15.28	20.46	35.75	17.94	27.5	36.19	45.69	40.7	26.31
Merged-chr18-82867743-5	chr18	82867672	82867872	+	987.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11875.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	10.5	14.09	7.42	14.08	9.41	25.4	13.95	11.36	25.57	18.58	18.59	12.22
Merged-chr1-95665237-3	chr1	95665176	95665376	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2318.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	13.33	16.1	10.27	12.47	19.23	18.5	6.98	22.88	14.75	20.08	14.57	13.16
Merged-chr6-97442179-3	chr6	97442080	97442280	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	URR1A|DNA|hAT-Charlie	17106.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	12.11	13.08	19.4	12.47	18.41	21.32	25.58	25.04	25.18	26.61	38.69	19.42
Merged-chr10-67072063-3	chr10	67071951	67072151	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	24937.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	11.71	17.86	19.97	15.69	18.0	17.56	7.31	18.11	22.82	30.63	24.62	17.23
Merged-chr1-36133776-3	chr1	36133663	36133863	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10550.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	5.65	9.31	22.82	21.32	68.32	46.41	75.73	100.96	56.06	29.62	67.84	33.21
Merged-chr11-55154678-3	chr11	55154556	55154756	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2950.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	13.33	15.09	9.7	26.55	15.96	13.8	15.28	8.86	14.55	26.11	19.09	12.84
Merged-chr7-109616553-3	chr7	109616472	109616672	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	-4.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	12.11	12.83	18.83	34.19	23.32	26.34	18.93	23.19	15.54	29.62	23.11	17.23
Merged-chr7-139212556-3	chr7	139212452	139212652	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027164)	promoter-TSS (NM_027164)	-436.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	16.56	12.32	21.11	17.29	20.86	31.67	19.93	35.36	25.37	16.07	21.61	13.78
Merged-chr11-87026692-2	chr11	87026593	87026793	+	987.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32931.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.46	6.54	1.14	7.64	30.68	24.77	21.26	21.14	28.91	19.08	33.16	9.08
Merged-chr6-97278344-5	chr6	97278265	97278465	+	987.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-25585.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	14.13	16.6	22.25	9.65	15.55	10.35	9.3	7.63	12.0	10.04	14.07	10.96
Merged-chr17-55761223-3	chr17	55761112	55761312	+	987.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 2 of 16)	MERV1_LTR|LTR|ERV1	11228.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	38.76	42.26	30.23	8.04	51.14	89.05	46.84	13.26	42.68	54.23	32.16	13.16
Merged-chr10-94771608-3	chr10	94771465	94771665	+	987.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029852, intron 13 of 15)	intron (NM_029852, intron 13 of 15)	82775.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.04	6.79	11.41	14.48	15.14	13.17	12.95	9.2	11.01	5.02	19.09	15.04
Merged-chr13-55892482-3	chr13	55892393	55892593	+	987.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61068.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	22.61	26.41	31.95	15.28	37.23	45.15	33.88	40.37	28.32	14.06	31.15	20.05
Merged-chr13-100203557-2	chr13	100203456	100203656	+	987.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1434.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	6.46	10.31	4.56	0.8	18.82	38.57	19.27	13.49	32.26	57.74	23.11	20.05
Merged-chr6-146619673-2	chr6	146619567	146619767	+	987.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 5 of 11)	intron (NM_026281, intron 5 of 11)	14925.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	14.13	7.55	14.26	17.7	10.23	18.19	28.9	24.06	1.18	0.0	2.01	1.25
Merged-chr2-32506858-3	chr2	32506772	32506972	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28487.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	14.13	10.82	23.96	12.47	22.09	26.97	14.95	31.99	26.55	21.09	35.68	26.31
Merged-chr6-125254308-3	chr6	125254207	125254407	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-11218.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	12.52	22.89	14.83	22.52	34.77	18.5	31.89	38.58	24.19	24.6	29.14	31.33
Merged-chr11-99386053-3	chr11	99385944	99386144	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010660, exon 7 of 8)	exon (NM_010660, exon 7 of 8)	3320.0	NM_010660	16661.0	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	26.25	35.72	9.13	16.49	16.77	23.83	15.61	18.73	33.83	29.62	24.12	12.84
Merged-chr11-86257572-3	chr11	86257423	86257623	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	45.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	25.04	19.37	23.39	14.08	19.64	17.25	18.27	10.82	22.62	19.08	16.08	10.96
Merged-chr8-46497763-3	chr8	46497665	46497865	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6799.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	13.73	30.94	23.39	27.35	31.09	54.56	34.21	61.12	37.96	17.07	47.23	22.87
Merged-chr1-87623819-3	chr1	87623705	87623905	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3493.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	17.36	11.57	25.67	21.72	21.27	21.01	26.24	30.48	18.49	13.05	26.63	15.04
Merged-chr10-26375992-3	chr10	26375908	26376108	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-789.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	11.31	19.37	7.42	13.67	14.32	21.95	11.29	15.7	23.6	19.08	34.17	18.48
Merged-chr6-38940812-1	chr6	38940712	38940912	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21826.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.63	3.02	19.4	17.7	7.36	3.45	3.32	8.52	5.7	10.54	7.03	4.7
Merged-chr7-99468599-7	chr7	99468432	99468632	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028145, exon 2 of 7)	exon (NM_028145, exon 2 of 7)	2528.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	13.33	24.4	22.25	10.46	23.32	20.07	22.92	21.25	33.44	24.6	21.61	21.3
Merged-chr10-119066157-1	chr10	119066057	119066257	+	987.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15658.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	2.02	4.53	7.42	4.83	6.55	5.33	2.99	1.91	7.67	15.57	34.67	9.08
Merged-chr11-67588567-3	chr11	67588464	67588664	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2064.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	29.07	16.6	32.52	12.47	29.86	37.32	20.59	34.23	30.29	26.61	26.13	16.92
Merged-chr14-101654427-1	chr14	101654327	101654527	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016723, intron 2 of 8)	CpG-4702	460.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	6.46	17.1	17.68	4.02	7.77	9.09	15.94	8.44	12.59	13.05	6.03	8.77
Merged-chr3-154286591-1	chr3	154286491	154286691	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43969.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.04	6.54	6.85	10.46	16.36	4.08	9.97	21.48	7.08	5.02	9.55	6.27
Merged-chr4-155250016-3	chr4	155249933	155250133	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	67.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	9.69	12.83	8.56	13.27	13.5	17.56	16.61	17.8	28.52	24.6	35.17	20.99
Merged-chr17-6476114-1	chr17	6476014	6476214	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25120.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	6.86	6.04	5.7	4.02	7.77	22.58	10.3	4.32	6.29	4.02	5.02	4.7
Merged-chr2-11293395-1	chr2	11293295	11293495	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008859, intron 16 of 17)	intron (NM_008859, intron 16 of 17)	-46094.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	4.85	5.03	3.42	1.61	11.45	0.94	2.66	8.07	6.88	4.02	5.53	3.76
Merged-chr13-101767337-3	chr13	101767222	101767422	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	CpG	895.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	10.5	17.1	24.53	31.37	22.5	22.58	27.57	23.33	26.75	25.61	29.14	15.35
Merged-chr2-52426863-2	chr2	52426751	52426951	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1977.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.4	1.51	3.42	2.41	11.86	15.99	12.29	16.26	16.52	16.07	22.11	21.62
Merged-chr2-180920545-1	chr2	180920445	180920645	+	987.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173761, intron 1 of 4)	CpG	391.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	7.67	6.79	13.12	13.27	7.77	8.47	9.97	8.69	23.01	8.54	16.58	17.54
Merged-chr6-124637252-3	chr6	124637141	124637341	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1156.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	22.21	28.17	23.96	15.69	27.41	65.22	30.56	14.55	32.65	39.16	33.16	15.66
Merged-chr19-11102098-3	chr19	11102003	11102203	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 5 of 6)	intron (NM_027058, intron 5 of 6)	-21000.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	17.36	22.64	24.53	19.31	35.59	21.32	16.28	27.73	18.88	22.59	11.56	17.54
Merged-chr5-121711679-4	chr5	121711550	121711750	+	986.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	41.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	9.69	17.61	13.69	13.27	9.41	18.19	12.95	11.72	22.03	17.07	5.53	17.54
Merged-chr8-124219318-3	chr8	124219208	124219408	+	986.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	-12086.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	16.96	7.8	27.95	22.52	25.77	22.26	33.22	24.53	12.39	15.57	42.71	19.74
Merged-chr10-17550867-3	chr10	17550768	17550968	+	986.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172360.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	14.13	17.1	39.93	29.76	43.36	54.25	93.34	68.47	34.42	31.13	72.36	29.45
Merged-chr5-64382605-3	chr5	64382491	64382691	+	986.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85351.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	20.59	10.56	15.97	18.5	14.32	16.31	11.29	10.4	17.11	16.07	25.63	9.4
Merged-chr3-136742905-3	chr3	136742801	136743001	+	986.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	72835.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	18.17	13.08	17.68	12.87	22.09	18.19	10.96	14.61	22.23	18.58	18.59	12.22
Merged-chr12-101029206-5	chr12	101029100	101029300	+	986.9424439999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362342)	promoter-TSS (NM_001362342)	-309.0	NM_026681	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	16.15	14.34	17.11	11.26	11.05	15.68	12.95	11.44	12.19	9.54	11.05	13.78
Merged-chr6-129230394-3	chr6	129230291	129230491	+	986.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7654.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	49.26	46.03	57.62	18.5	37.64	68.36	27.57	22.65	64.51	46.7	22.11	8.77
Merged-chr1-74369170-3	chr1	74369044	74369244	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033345, exon 10 of 10)	3' UTR (NM_001033345, exon 10 of 10)	-6059.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	20.59	9.81	26.81	26.95	27.82	26.03	28.57	30.93	38.16	26.11	62.81	31.95
Merged-chr1-165641602-3	chr1	165641511	165641711	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7070.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	18.57	19.37	10.84	19.31	16.77	17.25	9.97	14.16	34.22	29.12	23.11	23.81
Merged-chr5-106696032-3	chr5	106695937	106696137	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026856, intron 1 of 6)	CpG	793.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	9.69	18.61	21.11	17.7	18.82	23.52	16.28	18.56	25.57	23.1	25.12	22.24
Merged-chr2-57116793-3	chr2	57116692	57116892	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	CpG	-1754.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	29.88	11.82	70.74	72.8	54.41	64.6	85.37	117.06	100.31	80.84	208.03	93.04
Merged-chr8-68822916-3	chr8	68822811	68823011	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027590, intron 16 of 16)	intron (NM_027590, intron 16 of 16)	28982.0	NM_001293792	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	21.0	14.84	12.55	19.31	11.86	19.44	13.62	17.8	28.72	19.58	33.67	17.86
Merged-chr11-101583307-3	chr11	101583203	101583403	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359325, intron 1 of 7)	intron (NM_001359325, intron 1 of 7)	1004.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	29.48	12.83	25.1	21.72	28.64	20.38	22.59	15.64	12.98	30.63	20.6	14.1
Merged-chr11-86580570-4	chr11	86580533	86580733	+	986.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3525.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	10.9	15.09	21.11	18.1	29.05	19.76	26.91	20.47	26.36	40.17	27.13	13.78
Merged-chr12-117736184-3	chr12	117736073	117736273	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 22 of 27)	RLTR42-int|LTR|ERVK	-107688.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	14.13	16.85	15.97	9.25	12.27	27.91	9.3	17.02	27.14	22.09	22.61	16.92
Merged-chr15-31342704-3	chr15	31342595	31342795	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25064.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	7.67	3.52	16.54	18.1	34.77	16.31	61.12	59.5	13.77	20.59	20.1	15.04
Merged-chr1-136582048-3	chr1	136581946	136582146	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42855.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	25.44	24.9	25.67	28.96	24.96	34.18	10.3	27.84	41.7	34.65	30.65	22.87
Merged-chr18-10531796-3	chr18	10531693	10531893	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	78559.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	12.52	19.37	14.83	21.72	23.73	12.86	16.61	19.63	34.03	17.57	26.63	15.98
Merged-chr5-98033221-3	chr5	98033114	98033314	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2252.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	25.44	13.08	14.83	22.93	57.68	46.1	38.2	50.75	29.11	28.62	43.21	15.04
Merged-chr12-70713672-3	chr12	70713588	70713788	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111826.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	12.92	11.07	19.97	20.11	40.09	27.28	16.28	25.65	24.78	22.09	26.13	13.16
Merged-chr6-126940012-3	chr6	126939923	126940123	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	57.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	15.34	16.1	15.97	24.53	18.82	19.44	17.27	22.09	19.08	20.08	23.11	17.23
Merged-chr2-30407382-3	chr2	30407293	30407493	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007760, intron 6 of 13)	intron (NM_007760, intron 6 of 13)	8355.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	14.13	14.84	19.4	22.52	18.0	26.03	15.61	21.17	27.14	16.57	29.65	25.06
Merged-chr17-86732273-3	chr17	86732184	86732384	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21580.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	24.63	13.83	6.28	16.89	39.68	30.73	26.91	37.65	23.41	14.56	26.13	19.42
Merged-chr14-33319725-3	chr14	33319632	33319832	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	CpG	91292.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	25.44	13.33	21.11	14.48	15.14	16.31	11.96	21.39	19.08	18.08	17.08	14.72
Merged-chr6-113978464-3	chr6	113978364	113978564	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-43783.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	15.75	12.32	23.96	26.95	13.5	61.46	32.88	41.27	23.6	19.58	24.12	20.99
Merged-chr13-48528701-3	chr13	48528600	48528800	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7414.0	NR_029656	387247.0		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	24.23	17.86	9.7	9.25	19.23	27.91	6.64	14.72	29.31	23.1	20.1	18.48
Merged-chr3-122246196-3	chr3	122246080	122246280	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008129, intron 1 of 6)	CpG	623.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	19.38	13.33	13.12	21.72	15.55	13.17	10.96	20.8	16.13	17.07	20.6	14.41
Merged-chr11-119524665-3	chr11	119524548	119524748	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23172.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	16.15	13.33	13.69	10.86	43.77	44.53	14.62	24.64	29.5	35.15	41.2	18.17
Merged-chr17-56814560-3	chr17	56814468	56814668	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	16440.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	52.9	37.73	32.52	31.77	9.0	31.67	12.29	24.48	47.01	47.7	44.22	27.25
Merged-chr3-108958124-3	chr3	108958039	108958239	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001078646, intron 6 of 7)	intron (NM_001078646, intron 6 of 7)	17582.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	16.56	16.85	18.83	19.31	13.5	22.58	17.27	23.55	25.77	12.05	23.11	7.83
Merged-chr4-40301273-3	chr4	40301171	40301371	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11961.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	15.34	21.63	21.68	17.29	23.73	20.07	11.29	24.64	30.29	35.15	31.15	15.04
Merged-chr3-67515612-3	chr3	67515515	67515715	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164763)	promoter-TSS (NM_001164763)	-92.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	35.13	21.13	13.12	25.74	10.64	13.48	19.6	19.37	34.03	18.58	32.66	18.8
Merged-chr1-151457308-3	chr1	151457206	151457406	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026876, intron 13 of 14)	intron (NM_026876, intron 13 of 14)	14913.0	NR_106150	102466847.0		NR_106150	ENSMUSG00000106406	Mir7682	mmu-mir-7682	microRNA 7682	ncRNA	6.46	17.36	30.23	28.56	22.09	17.87	13.62	24.14	26.16	13.56	26.63	19.74
Merged-chr2-168579275-3	chr2	168579163	168579363	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	11102.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	30.28	26.91	27.95	33.78	32.32	25.71	19.6	31.21	38.55	22.09	26.13	10.34
Merged-chr1-86532544-3	chr1	86532443	86532643	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5986.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	23.02	27.67	14.83	12.07	22.5	31.67	13.62	15.87	42.68	32.13	26.13	17.86
Merged-chr3-146149821-3	chr3	146149712	146149912	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026656)	promoter-TSS (NM_026656)	-21.0	NM_026656	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	20.19	14.34	6.28	16.49	12.68	15.99	16.28	12.59	19.28	26.11	12.06	13.47
Merged-chr1-182539529-3	chr1	182539429	182539629	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21919.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	18.17	18.36	15.4	11.66	14.32	23.83	17.61	14.24	26.55	26.11	28.64	12.84
Merged-chr16-50530305-3	chr16	50530204	50530404	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1802.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	27.05	18.61	14.26	25.34	21.68	20.38	19.93	24.59	34.22	49.71	36.18	21.62
Merged-chr18-32834210-1	chr18	32834110	32834310	+	986.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045381, intron 1 of 4)	Lx8|LINE|L1	-3015.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	0.0	3.02	1.71	1.21	16.77	16.31	12.62	12.87	0.59	2.01	0.5	0.63
Merged-chr2-174437117-3	chr2	174437047	174437247	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1892.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	13.33	16.35	6.85	13.67	12.68	13.48	11.96	11.75	16.92	25.11	16.58	17.54
Merged-chr13-60710156-1	chr13	60710056	60710256	+	986.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	RSINE1|SINE|B4	76208.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.25	7.04	11.41	4.83	17.59	22.89	11.96	18.17	2.95	6.03	9.55	4.07
Merged-chr14-45677417-3	chr14	45677290	45677490	+	986.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19247.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	71.47	70.68	94.13	92.51	78.14	98.78	109.95	93.25	30.09	27.62	32.66	13.16
Merged-chr13-23438080-3	chr13	23437960	23438160	+	986.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7043.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	16.56	16.85	19.97	33.78	20.86	31.04	22.59	26.27	18.88	20.08	15.07	12.22
Merged-chr3-107081461-3	chr3	107081377	107081577	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20090.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	13.33	15.85	29.09	24.13	12.27	20.38	11.29	17.94	24.98	40.67	23.11	14.72
Merged-chr10-128458531-3	chr10	128458469	128458669	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106183)	promoter-TSS (NR_106183)	-111.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	24.23	20.37	13.12	14.48	22.09	23.2	17.27	21.06	19.47	29.12	16.58	17.54
Merged-chr11-62005091-3	chr11	62004993	62005193	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48330.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	25.44	31.94	18.25	30.57	17.18	26.65	17.27	21.06	31.27	15.57	18.09	20.36
Merged-chr17-33929483-3	chr17	33929367	33929567	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-427.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	44.01	25.15	35.94	14.88	23.32	37.0	9.97	17.69	46.03	51.21	44.22	22.24
Merged-chr12-70969972-3	chr12	70969873	70970073	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4650.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	34.73	14.09	18.25	11.66	24.96	29.79	20.93	14.44	24.0	34.14	34.67	19.11
Merged-chr10-128493083-3	chr10	128493036	128493236	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317220)	promoter-TSS (NM_001317220)	-127.0	NM_001317219	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	9.69	7.8	21.68	6.84	7.36	15.99	7.64	15.73	24.39	32.13	35.68	20.99
Merged-chr8-26693953-3	chr8	26693851	26694051	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130472.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	21.0	19.37	14.83	16.09	19.23	33.24	21.92	17.07	59.6	58.75	44.22	29.13
Merged-chr18-5097441-3	chr18	5097332	5097532	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153153, exon 24 of 35)	exon (NM_153153, exon 24 of 35)	50843.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	37.96	26.16	18.25	40.22	58.09	110.06	92.01	101.27	34.62	18.58	34.67	14.72
Merged-chr3-96221520-2	chr3	96221405	96221605	+	986.5499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	433.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	14.94	5.28	11.41	7.24	7.77	13.48	6.64	8.64	20.26	26.61	18.09	12.22
Merged-chr10-71349412-3	chr10	71349305	71349505	+	986.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1642.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	9.29	9.56	12.55	18.1	22.09	32.93	42.19	38.86	12.39	25.11	20.1	20.36
Merged-chr9-50459697-3	chr9	50459604	50459804	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34821.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	16.56	15.59	22.25	6.84	27.82	13.48	12.62	11.44	26.75	14.56	20.1	14.72
Merged-chr19-15924597-1	chr19	15924497	15924697	+	986.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	25.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	6.06	5.53	0.0	5.63	6.95	10.66	7.64	13.18	3.15	6.03	5.53	3.45
Merged-chr6-146162797-3	chr6	146162695	146162895	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 52 of 56)	intron (NM_019923, intron 52 of 56)	228673.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	23.02	17.36	30.8	29.76	43.77	31.04	34.21	65.41	42.09	17.57	54.77	28.82
Merged-chr8-24400333-2	chr8	24400243	24400443	+	986.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38603.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	16.96	5.03	6.28	9.65	18.0	19.76	14.62	12.56	26.16	28.12	18.09	16.6
Merged-chr1-64690182-2	chr1	64690089	64690289	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038009, intron 1 of 1)	intron (NR_038009, intron 1 of 1)	470.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	25.04	22.89	19.97	13.67	13.09	15.99	13.95	7.91	20.85	12.55	7.54	4.07
Merged-chr7-128172688-3	chr7	128172591	128172791	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	32.71	10.06	35.37	37.4	35.18	15.37	24.25	32.8	24.39	18.08	23.62	19.74
Merged-chr8-33930793-4	chr8	33930730	33930930	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-967.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	8.08	2.26	11.41	4.42	13.09	19.76	7.97	6.11	21.24	30.63	16.58	10.96
Merged-chr17-45554620-3	chr17	45554525	45554725	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1075.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	29.88	17.61	15.97	25.34	21.68	19.13	14.28	11.21	33.44	23.6	32.16	23.18
Merged-chr8-125720264-3	chr8	125720185	125720385	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13918.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	24.23	20.37	13.69	20.91	33.14	26.03	16.28	19.6	30.88	36.65	40.2	23.18
Merged-chr11-47398043-3	chr11	47397942	47398142	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18740.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	24.23	30.69	30.23	21.72	9.0	34.18	25.24	24.2	48.39	33.14	42.71	14.41
Merged-chr3-103383364-3	chr3	103383262	103383462	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104069.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	23.02	11.07	17.11	16.89	33.14	43.27	26.57	40.77	35.4	43.18	75.37	31.33
Merged-chr7-100494728-3	chr7	100494647	100494847	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	1389.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	27.05	12.07	16.54	11.66	27.41	21.01	18.93	20.02	14.55	18.58	17.59	18.48
Merged-chr11-75636721-3	chr11	75636624	75636824	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008916, intron 3 of 11)	intron (NM_008916, intron 3 of 11)	5704.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	25.84	13.58	22.82	12.07	31.91	22.58	8.3	16.37	22.23	17.07	39.7	11.59
Merged-chr8-126755908-3	chr8	126755808	126756008	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93112.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	28.67	26.66	22.25	23.33	37.23	25.71	26.24	48.95	34.81	15.06	40.2	32.27
Merged-chr3-8691950-3	chr3	8691844	8692044	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24906.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	17.77	11.82	17.68	14.48	19.23	29.48	17.94	31.74	15.14	16.07	21.1	10.96
Merged-chr7-38029416-2	chr7	38029317	38029517	+	986.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-9865.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	12.92	14.34	8.56	18.9	21.27	15.05	15.61	13.07	3.15	2.01	4.52	2.19
Merged-chr2-43748608-4	chr2	43748496	43748696	+	986.392822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153820)	promoter-TSS (NM_153820)	-228.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	7.67	8.05	7.42	16.09	7.77	7.53	15.94	10.35	11.6	13.05	18.59	12.53
Merged-chr5-138996077-3	chr5	138995986	138996186	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-11694	-1133.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	23.02	14.59	26.81	23.33	32.73	12.86	15.61	22.91	22.03	25.11	15.07	19.11
Merged-chr7-15948513-3	chr7	15948426	15948626	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153068)	TTS (NM_153068)	-2418.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	21.8	17.61	15.4	19.31	30.68	30.42	17.94	28.12	27.54	39.67	37.18	19.11
Merged-chr6-99436483-3	chr6	99436360	99436560	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-1115.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	11.71	17.36	23.96	14.88	26.18	33.24	21.92	40.79	16.72	19.58	26.13	13.16
Merged-chr14-66232713-3	chr14	66232615	66232815	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18891.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	16.15	19.37	33.66	18.5	22.09	37.0	13.95	16.63	28.32	42.68	36.68	17.54
Merged-chr1-86228940-3	chr1	86228861	86229061	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	74181.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	16.96	17.61	18.25	32.98	25.36	17.56	26.91	28.26	15.54	15.57	17.59	10.02
Merged-chr13-56616552-3	chr13	56616470	56616670	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	6984.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	28.67	16.6	30.23	29.36	22.91	18.81	13.62	19.15	19.08	25.61	17.08	14.72
Merged-chr17-43667210-3	chr17	43667119	43667319	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018887)	promoter-TSS (NM_018887)	-5.0	NM_001357123	74011.0	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	33.11	10.56	17.68	14.08	34.36	28.54	11.29	42.28	47.6	38.16	56.78	24.43
Merged-chr11-118103061-3	chr11	118102981	118103181	+	986.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 20 of 80)	intron (NM_001167746, intron 20 of 80)	26138.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	14.54	15.34	18.25	16.49	15.14	20.07	11.63	16.43	30.68	20.08	27.13	12.84
Merged-chr16-31029915-3	chr16	31029822	31030022	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	51510.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	52.49	41.75	63.89	55.91	60.14	60.52	43.18	45.45	31.47	18.58	83.91	35.09
Merged-chr2-25022278-3	chr2	25022193	25022393	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-32086.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	19.38	17.36	15.4	18.9	21.27	24.46	19.6	30.7	39.14	28.62	50.75	29.76
Merged-chr15-89196076-3	chr15	89195963	89196163	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027081, intron 1 of 19)	CpG	411.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	20.19	14.34	10.84	12.07	22.5	20.07	13.29	22.09	18.1	17.57	33.16	16.29
Merged-chr10-62590365-3	chr10	62590256	62590456	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019553, intron 7 of 14)	intron (NM_019553, intron 7 of 14)	-11899.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	21.4	19.37	19.97	15.28	12.27	31.36	9.97	18.73	25.57	26.61	24.62	15.66
Merged-chr1-162573922-3	chr1	162573826	162574026	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016796, intron 1 of 7)	MIRc|SINE|MIR	3098.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	20.59	8.05	16.54	8.04	15.55	23.2	10.63	18.56	27.14	38.16	22.11	20.68
Merged-chr19-10690599-3	chr19	10690486	10690686	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1851.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	33.92	52.57	28.52	26.55	34.36	46.41	19.27	11.05	48.58	50.71	36.68	15.04
Merged-chr10-40435551-3	chr10	40435452	40435652	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198164, intron 3 of 11)	intron (NM_198164, intron 3 of 11)	86244.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	19.79	25.4	9.7	18.9	18.41	35.12	8.97	18.7	20.65	22.59	8.54	9.08
Merged-chr8-95142606-3	chr8	95142472	95142672	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145831)	promoter-TSS (NM_001145831)	-32.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	13.33	12.07	2.28	16.89	24.96	14.74	11.63	16.07	17.31	17.57	18.09	13.16
Merged-chr5-140721016-1	chr5	140720916	140721116	+	986.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3111.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.65	5.03	9.13	8.45	6.14	15.37	8.3	13.91	6.1	4.02	9.04	2.82
Merged-chr3-9947878-3	chr3	9947772	9947972	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64713.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	13.33	18.11	23.39	18.9	28.23	25.09	15.28	27.59	33.44	25.11	34.17	17.54
Merged-chr5-64370485-3	chr5	64370388	64370588	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	97454.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	13.73	13.58	12.55	14.88	15.14	17.87	11.63	19.93	19.87	16.57	21.61	16.29
Merged-chr4-13192355-3	chr4	13192124	13192324	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	285387.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	3.23	5.53	6.85	6.84	4.09	2.51	8.3	8.97	1.57	8.03	3.01	3.76
Merged-chr1-151343204-3	chr1	151343127	151343327	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1259.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	12.11	11.57	13.69	20.91	23.73	24.15	21.59	22.09	20.06	24.6	28.64	19.11
Merged-chr7-24387377-3	chr7	24387290	24387490	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12238.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	17.36	21.38	16.54	11.66	25.77	20.7	8.3	10.79	71.99	84.35	58.29	31.01
Merged-chr7-80207404-3	chr7	80207290	80207490	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	8949.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	27.46	20.37	31.38	27.75	14.73	20.7	45.84	38.69	23.41	12.05	26.63	11.28
Merged-chr16-94574168-3	chr16	94574082	94574282	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3275.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	14.54	19.87	14.26	7.24	11.45	34.18	16.28	12.17	21.24	28.12	27.64	19.11
Merged-chr5-43808178-3	chr5	43808075	43808275	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10718.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	21.4	20.12	22.82	28.15	11.86	25.09	14.28	28.71	25.57	22.09	47.74	17.86
Merged-chr6-39232853-3	chr6	39232765	39232965	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26092.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	30.28	22.39	15.4	18.9	29.05	21.95	16.61	15.56	21.64	17.57	26.13	15.04
Merged-chr11-115633103-3	chr11	115633009	115633209	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4814.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	14.54	13.83	18.25	22.52	20.05	17.25	12.62	11.19	21.83	25.11	18.09	15.66
Merged-chr17-34123665-3	chr17	34123560	34123760	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010386, intron 1 of 5)	intron (NM_010386, intron 1 of 5)	828.0	NM_010386	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	28.27	27.17	21.11	13.27	24.96	26.97	15.61	21.76	43.66	32.13	32.16	14.41
Merged-chr11-31812395-3	chr11	31812314	31812514	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	12133.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	22.61	18.61	14.83	25.34	20.86	22.26	10.3	32.16	17.7	13.56	25.12	13.78
Merged-chr17-83703485-3	chr17	83703368	83703568	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2695.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	27.86	17.61	19.97	20.11	21.68	11.92	17.94	20.22	21.05	20.59	36.68	29.45
Merged-chr11-20232208-3	chr11	20232067	20232267	+	986.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	17257.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	18.57	17.1	24.53	25.74	24.96	13.48	29.9	21.53	19.28	7.53	21.1	14.1
Merged-chr16-33917671-3	chr16	33917574	33917774	+	986.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49364.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	19.79	18.36	27.95	45.05	25.36	15.37	36.21	54.06	24.0	13.05	40.2	28.51
Merged-chr1-173880344-2	chr1	173880263	173880463	+	986.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170853)	promoter-TSS (NM_001170853)	-176.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	8.88	7.55	5.7	8.04	50.32	27.59	17.94	35.89	13.18	14.56	16.58	19.74
Merged-chr5-92312479-2	chr5	92312395	92312595	+	986.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2471.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	11.31	14.59	18.83	18.1	9.0	6.59	3.65	2.75	22.03	22.59	29.65	17.54
Merged-chr11-51855631-3	chr11	51855510	51855710	+	986.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 1 of 12)	intron (NM_001357588, intron 1 of 12)	1871.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	31.5	20.12	17.11	24.53	24.55	32.93	22.92	31.91	32.85	22.09	40.7	21.3
Merged-chr7-121333151-3	chr7	121333042	121333242	+	986.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59154.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	7.27	11.57	29.66	25.34	33.14	34.49	23.25	22.12	34.03	39.16	44.22	31.33
Merged-chr4-117210552-3	chr4	117210444	117210644	+	986.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27920.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	13.33	18.36	15.97	18.9	25.77	53.62	15.94	19.01	32.85	41.67	60.3	26.94
Merged-chr8-105264658-3	chr8	105264575	105264775	+	986.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	27.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	19.38	17.61	13.12	22.93	20.86	26.34	14.62	23.66	21.64	22.09	44.22	11.9
Merged-chr13-114387983-3	chr13	114387874	114388074	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010887, exon 1 of 5)	exon (NM_010887, exon 1 of 5)	120.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	10.09	24.15	19.97	37.81	21.27	20.38	40.19	24.62	22.42	26.11	22.11	22.56
Merged-chr10-95152795-3	chr10	95152709	95152909	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6984.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	12.52	18.86	15.97	16.49	32.32	18.81	34.21	48.53	28.72	16.57	20.1	21.62
Merged-chr1-54828044-3	chr1	54827962	54828162	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	98325.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	26.25	39.99	45.64	30.16	8.18	23.2	11.63	13.43	38.75	30.63	34.67	13.16
Merged-chr2-31084653-3	chr2	31084542	31084742	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	11858.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	31.5	19.37	31.95	28.15	17.59	23.2	15.94	23.94	16.33	14.06	17.59	16.92
Merged-chr7-79696742-2	chr7	79696650	79696850	+	986.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029835, exon 22 of 22)	exon (NM_029835, exon 22 of 22)	17436.0	NM_010626	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	8.88	6.79	3.99	6.03	13.5	13.17	22.59	18.84	19.87	20.59	29.14	10.65
Merged-chr4-136896694-4	chr4	136896590	136896790	+	986.142822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007572, exon 3 of 3)	exon (NM_007572, exon 3 of 3)	2154.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	12.52	5.53	10.84	18.1	8.59	19.76	24.91	15.06	11.8	13.05	11.05	11.28
Merged-chr11-67563373-3	chr11	67563270	67563470	+	986.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-23130.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	15.75	15.85	15.4	4.83	8.59	43.9	12.29	12.36	53.7	55.73	51.25	27.88
Merged-chr14-31494611-3	chr14	31494520	31494720	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	138.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	22.61	14.59	19.4	18.9	16.77	28.85	9.97	16.93	24.98	25.11	28.64	21.3
Merged-chr3-88607070-3	chr3	88606950	88607150	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9157.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	39.17	37.48	50.77	14.08	60.55	63.34	46.17	29.1	51.53	24.6	51.76	25.69
Merged-chr1-131294194-3	chr1	131294116	131294316	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14653.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	11.71	10.06	23.96	16.49	27.82	25.4	34.55	33.98	21.05	25.61	36.68	15.66
Merged-chr16-45158296-3	chr16	45158212	45158412	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026402)	promoter-TSS (NM_026402)	361.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	14.54	11.82	2.28	13.67	20.86	14.74	16.28	15.11	19.47	20.59	26.13	10.96
Merged-chr2-27761944-3	chr2	27761847	27762047	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	51364.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	15.34	14.59	10.27	12.47	24.14	27.59	20.26	16.04	31.08	29.62	23.11	28.19
Merged-chr4-155694774-3	chr4	155694682	155694882	+	986.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178699, exon 1 of 1)	exon (NM_178699, exon 1 of 1)	440.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	30.69	14.84	13.12	18.9	18.0	24.77	14.62	24.28	21.83	19.58	24.12	23.18
Merged-chr7-16207691-3	chr7	16207614	16207814	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14279.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	17.36	18.36	13.69	23.73	32.32	36.69	25.91	30.95	185.28	145.11	196.97	93.35
Merged-chr15-38259428-3	chr15	38259347	38259547	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	40244.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	21.8	27.17	32.52	28.15	11.05	19.76	27.57	27.48	52.71	36.65	80.9	42.92
Merged-chr18-6241967-3	chr18	6241875	6242075	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	-451.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	15.75	25.91	19.97	15.28	34.77	36.06	13.29	25.6	23.8	17.57	29.14	12.53
Merged-chr10-99265499-3	chr10	99265399	99265599	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026268, intron 2 of 2)	intron (NM_026268, intron 2 of 2)	2268.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	16.56	15.09	13.12	18.9	15.14	15.37	19.27	19.21	20.26	19.08	26.13	11.9
Merged-chr16-52185113-3	chr16	52185018	52185218	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 14 of 17)	intron (NM_001033238, intron 14 of 17)	153569.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	14.94	21.38	32.52	33.38	15.55	14.11	12.29	28.18	45.83	20.59	32.66	15.98
Merged-chr8-84998039-3	chr8	84997948	84998148	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167991, exon 15 of 22)	exon (NM_001167991, exon 15 of 22)	7453.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	22.61	20.63	29.09	22.12	27.41	30.73	13.62	26.61	33.24	16.07	49.24	32.27
Merged-chr1-80665935-3	chr1	80665833	80666033	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-581.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	30.69	17.86	42.78	56.31	23.73	11.92	26.57	32.1	16.13	21.59	30.15	13.78
Merged-chr17-35866552-3	chr17	35866453	35866653	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-62.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	39.98	59.36	35.94	14.48	43.36	86.23	17.61	7.99	76.12	57.74	43.21	15.98
Merged-chr17-10842355-3	chr17	10842257	10842457	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	1998.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	13.33	17.61	6.28	22.52	23.73	13.48	12.29	11.5	44.25	31.13	39.7	24.43
Merged-chr3-68708427-3	chr3	68708309	68708509	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16985.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	23.82	16.35	18.83	20.11	12.68	24.77	12.29	17.16	43.07	48.2	27.13	20.05
Merged-chr3-152463610-1	chr3	152463510	152463710	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001346655)	TTS (NM_001346655)	66926.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.23	0.0	7.99	5.63	5.32	3.76	7.64	14.69	7.87	18.58	7.03	5.95
Merged-chr5-136246581-3	chr5	136246494	136246694	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1654.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	16.96	17.86	20.54	12.87	25.77	34.81	10.96	21.08	37.57	53.73	41.71	13.47
Merged-chr9-37657248-3	chr9	37657141	37657341	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025289)	promoter-TSS (NM_025289)	71.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	21.8	16.1	30.23	8.45	22.91	20.7	17.61	25.88	15.14	34.65	19.6	20.68
Merged-chr18-46370788-3	chr18	46370719	46370919	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58891.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	18.17	13.58	16.54	23.73	15.96	5.02	30.89	41.8	22.82	12.55	40.7	20.68
Merged-chr12-112623976-3	chr12	112623882	112624082	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	3935.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	17.77	19.37	11.98	10.46	27.0	16.93	8.97	19.91	38.16	32.13	18.09	20.36
Merged-chr13-113617364-3	chr13	113617265	113617465	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1199.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	28.27	16.85	18.25	12.87	15.14	25.09	31.89	23.78	36.98	35.15	45.22	31.33
Merged-chrX-87238383-3	chrX	87238283	87238483	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160403, intron 5 of 10)	intron (NM_001160403, intron 5 of 10)	877240.0	NM_001160403	331461.0	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	69.45	82.5	47.92	37.81	32.73	30.42	28.57	22.09	23.01	35.65	36.18	37.91
Merged-chr11-103939738-1	chr11	103939638	103939838	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008740, intron 1 of 20)	L1M4|LINE|L1	14318.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	4.04	2.52	3.42	9.25	4.5	1.25	6.64	10.23	2.56	0.5	3.52	7.52
Merged-chr19-44930205-2	chr19	44930106	44930306	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-913.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	8.08	5.79	5.7	1.21	11.86	15.37	3.65	3.22	29.31	27.11	10.55	5.33
Merged-chr10-127603193-1	chr10	127603093	127603293	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17955.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.42	4.28	5.7	2.82	9.0	4.7	4.98	8.41	4.52	5.02	7.54	5.95
Merged-chr11-103363561-4	chr11	103363463	103363663	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_183288, exon 1 of 3)	5' UTR (NM_183288, exon 1 of 3)	129.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	25.44	34.21	31.95	23.33	10.64	26.34	11.63	22.91	12.98	5.52	10.55	7.52
Merged-chr5-45856151-2	chr5	45856064	45856264	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	388.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	8.48	18.61	9.7	9.25	17.59	12.86	6.64	15.59	15.93	11.55	18.59	17.23
Merged-chr8-34689915-1	chr8	34689815	34690015	+	986.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER88|LTR|ERVL	-49599.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.0	3.77	1.71	2.41	1.64	3.14	2.33	2.61	28.72	23.6	19.6	18.17
Merged-chr1-92742522-3	chr1	92742392	92742592	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89153.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	12.52	14.59	41.07	35.8	36.41	38.57	39.2	55.21	31.67	30.13	39.7	27.57
Merged-chrUn_JH584304-47510-1	chrUn_JH584304	47410	47610	+	986.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12179.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.75	25.11	20.6	26.63
Merged-chr2-121140055-1	chr2	121139955	121140155	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-373.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	6.06	9.31	22.25	12.47	14.32	8.78	8.97	12.45	13.18	11.55	26.63	16.29
Merged-chr13-119329659-3	chr13	119329530	119329730	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	79381.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	18.17	12.83	21.68	16.09	14.32	18.81	12.95	28.79	31.47	14.56	43.72	19.11
Merged-chr9-95574573-3	chr9	95574476	95574676	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14759.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	29.07	18.86	22.25	22.93	23.32	27.28	21.26	32.64	35.01	17.07	18.09	24.43
Merged-chr11-119268442-3	chr11	119268322	119268522	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	459.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	16.96	15.09	15.97	12.07	13.91	9.41	12.95	19.43	23.6	14.06	19.6	13.47
Merged-chr6-136555767-3	chr6	136555682	136555882	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36931.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	15.34	14.09	13.69	18.1	14.32	22.58	13.95	16.37	16.72	14.06	25.12	18.17
Merged-chr18-50126284-3	chr18	50126167	50126367	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1934.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	24.63	22.39	43.35	29.76	23.32	18.81	17.94	33.79	27.14	11.55	20.6	11.9
Merged-chr1-62760263-3	chr1	62760184	62760384	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	34448.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	27.05	29.93	22.25	22.52	22.91	14.42	11.29	24.42	25.77	9.04	20.6	13.16
Merged-chr15-101165785-3	chr15	101165679	101165879	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8293.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	18.17	16.6	8.56	12.47	22.5	20.7	11.96	14.3	21.64	35.15	27.13	11.28
Merged-chr6-115480480-3	chr6	115480383	115480583	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58417.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	18.17	12.83	24.53	34.19	20.05	20.07	8.97	28.12	16.72	22.59	43.72	17.54
Merged-chr12-102302477-3	chr12	102302361	102302561	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	18820.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	17.36	15.85	39.93	10.86	38.86	33.55	23.58	30.59	24.98	23.1	29.14	11.9
Merged-chr11-119355470-3	chr11	119355377	119355577	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	33.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	39.98	34.21	15.4	28.56	24.96	29.16	46.5	15.79	36.39	38.16	39.7	37.28
Merged-chr3-81041132-3	chr3	81041017	81041217	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	4701.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	17.77	9.81	47.35	19.71	28.64	52.68	38.2	45.17	27.93	21.59	29.65	22.24
Merged-chr18-82912270-2	chr18	82912169	82912369	+	985.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	1390.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.86	9.56	2.28	8.45	17.18	14.42	9.97	9.67	21.05	19.58	30.65	13.47
Merged-chr4-141958001-3	chr4	141957913	141958113	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24979.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	12.52	12.83	11.98	18.9	28.23	16.93	16.61	20.61	35.21	47.2	51.76	31.64
Merged-chr15-76626124-3	chr15	76626044	76626244	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-60.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	22.21	16.1	17.11	12.47	31.09	32.3	9.97	21.84	36.58	51.72	30.65	25.69
Merged-chr1-34433374-3	chr1	34433292	34433492	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-193.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	35.13	25.91	14.83	18.5	18.0	37.63	10.96	19.71	45.24	60.25	48.24	17.86
Merged-chr5-5367157-3	chr5	5366983	5367183	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	13168.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.85	1.76	2.28	6.84	4.91	5.33	4.32	8.66	46.03	34.14	43.21	53.57
Merged-chr5-20749644-3	chr5	20749542	20749742	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132482.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	19.38	16.1	18.25	36.2	35.59	21.32	42.19	61.85	19.08	14.56	35.68	14.1
Merged-chr6-55431125-2	chr6	55431018	55431218	+	985.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-20860.0	NM_001025372	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	14.13	12.07	18.25	18.5	26.18	24.77	18.6	32.72	1.38	0.5	0.5	0.63
Merged-chr13-98814168-3	chr13	98814072	98814272	+	985.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1277.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	17.77	19.37	21.11	13.67	39.27	55.5	22.92	29.64	30.09	23.1	36.68	18.8
Merged-chr7-35026073-3	chr7	35025972	35026172	+	985.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	30494.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	12.92	17.36	16.54	14.08	11.05	21.32	9.3	21.11	21.05	19.58	35.68	23.49
Merged-chr10-62217456-3	chr10	62217360	62217560	+	985.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	13758.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	31.09	22.39	14.26	17.29	18.82	26.34	13.62	16.29	19.87	25.11	20.1	4.7
Merged-chr6-34938620-3	chr6	34938541	34938741	+	985.8148189999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009292, intron 8 of 8)	intron (NM_009292, intron 8 of 8)	17693.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	21.0	18.61	9.13	23.33	14.73	23.52	30.56	24.93	16.92	16.57	27.64	24.43
Merged-chr11-3179756-3	chr11	3179659	3179859	+	985.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	13704.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	16.56	27.17	17.68	12.47	20.86	6.27	14.95	15.48	1.38	1.0	0.0	1.57
Merged-chr2-33978688-3	chr2	33978602	33978802	+	985.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90756.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	12.92	13.08	29.09	12.47	29.86	31.36	6.64	24.28	52.32	29.12	30.15	27.57
Merged-chr13-55472574-5	chr13	55472495	55472695	+	985.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019813)	TTS (NM_019813)	5181.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	8.08	18.86	17.11	11.26	18.82	23.83	11.29	13.63	21.83	21.59	27.13	13.47
Merged-chr9-75432934-3	chr9	75432838	75433038	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8586.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	12.92	15.34	17.11	6.84	14.32	21.32	13.29	9.31	49.76	31.63	35.68	25.37
Merged-chr15-90679464-3	chr15	90679360	90679560	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-72.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	6.46	12.07	16.54	16.89	26.18	31.36	24.91	34.68	18.1	19.58	20.6	11.28
Merged-chr8-95428367-3	chr8	95428278	95428478	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	6491.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	12.11	18.61	26.24	21.32	24.96	15.99	12.29	37.4	32.45	24.6	33.16	18.48
Merged-chr2-23023945-3	chr2	23023841	23024041	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	16300.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	10.9	20.12	18.25	23.33	15.96	21.95	13.29	18.14	30.09	29.62	38.69	23.49
Merged-chr6-115767550-3	chr6	115767451	115767651	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5085.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	17.77	12.32	17.11	15.69	15.96	21.64	8.3	22.12	24.0	23.6	21.1	18.48
Merged-chr7-130839576-3	chr7	130839463	130839663	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26161.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	14.54	24.15	11.98	7.64	28.64	44.84	14.62	15.45	20.06	30.13	25.63	14.1
Merged-chr5-44049529-3	chr5	44049436	44049636	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	45232.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	22.61	16.35	16.54	41.43	12.27	14.74	11.63	16.57	29.31	28.12	26.13	19.74
Merged-chrX-142682202-3	chrX	142682101	142682301	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 1 of 8)	intron (NR_152447, intron 1 of 8)	475.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	18.17	17.1	13.12	10.05	19.23	27.91	19.27	24.7	13.77	19.08	21.61	11.59
Merged-chr7-89411527-3	chr7	89411427	89411627	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7161.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	36.34	17.86	31.95	39.01	53.18	34.49	46.17	71.19	20.65	15.06	24.12	18.48
Merged-chr12-117566481-3	chr12	117566379	117566579	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	50000.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	14.94	16.85	31.38	32.98	16.36	16.93	19.27	24.84	28.32	23.6	37.18	22.56
Merged-chr5-63811974-3	chr5	63811881	63812081	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-514.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	16.56	9.56	14.26	15.69	15.96	21.01	7.64	21.2	26.95	31.63	22.61	16.6
Merged-chr1-156420978-5	chr1	156420858	156421058	+	985.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346967)	promoter-TSS (NM_001346967)	-43.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	24.23	12.32	13.69	7.64	13.91	22.26	15.94	16.88	24.78	30.13	21.61	13.47
Merged-chr1-84363050-2	chr1	84362948	84363148	+	985.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78403.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.63	3.27	7.42	13.67	18.0	21.01	18.27	15.76	19.47	23.1	18.09	11.9
Merged-chr11-78803982-4	chr11	78803845	78804045	+	985.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22650.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	7.27	10.06	12.55	12.87	6.95	9.72	9.63	9.87	6.1	16.07	12.56	10.96
Merged-chr11-117958376-2	chr11	117958270	117958470	+	985.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10996.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.44	7.8	15.97	2.41	20.86	20.7	11.29	10.4	11.6	12.55	7.03	9.4
Merged-chr4-54642556-2	chr4	54642462	54642662	+	985.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-305383.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	14.54	13.83	19.97	25.74	15.55	16.62	11.96	19.77	0.0	1.0	0.0	0.0
Merged-chr9-95560225-5	chr9	95560193	95560393	+	985.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	476.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	15.75	10.06	18.83	17.29	17.59	20.7	19.27	17.94	19.87	18.08	34.17	26.94
Merged-chr19-44267115-3	chr19	44266988	44267188	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-26588.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	18.17	18.36	24.53	13.27	19.23	21.95	21.26	18.87	25.57	18.58	26.13	11.59
Merged-chr5-110416716-3	chr5	110416606	110416806	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-29579.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	16.15	12.58	15.97	14.48	20.05	16.62	10.96	19.93	19.08	13.56	26.63	12.22
Merged-chr11-34827120-3	chr11	34827024	34827224	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027411, intron 2 of 11)	Tigger7|DNA|TcMar-Tigger	6517.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	18.98	15.85	7.99	6.03	21.68	20.07	10.63	19.43	24.78	34.65	26.13	18.48
Merged-chr14-31406291-3	chr14	31406184	31406384	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11393.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	23.02	10.82	22.25	23.73	29.46	20.7	14.95	27.08	21.64	16.07	27.13	13.16
Merged-chr15-6081489-3	chr15	6081397	6081597	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR82B|LTR|ERVL	-36793.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	25.44	12.83	25.67	32.58	33.14	22.89	32.88	50.83	25.37	13.05	37.69	12.84
Merged-chr18-49945625-3	chr18	49945530	49945730	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081371, intron 37 of 42)	intron (NM_001081371, intron 37 of 42)	-33797.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	28.27	18.86	24.53	41.83	27.41	14.74	42.19	68.52	28.72	13.56	33.67	23.81
Merged-chr17-34281443-1	chr17	34281343	34281543	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6328.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	11.71	24.4	17.11	7.24	1.23	7.21	2.66	0.22	5.9	1.0	1.51	4.07
Merged-chr3-69223132-3	chr3	69223016	69223216	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027843, exon 1 of 1)	3' UTR (NM_027843, exon 1 of 1)	697.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	14.54	18.36	29.66	18.1	15.96	27.91	15.61	21.25	28.13	35.15	23.11	12.53
Merged-chr6-137757808-3	chr6	137757720	137757920	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172733, intron 1 of 8)	MTC|LTR|ERVL-MaLR	3243.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	16.96	15.59	29.66	16.09	15.14	16.93	22.26	32.94	20.85	22.59	28.14	10.65
Merged-chr11-3409214-3	chr11	3409106	3409306	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	32.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	32.71	33.2	14.26	32.98	36.0	31.98	20.93	36.45	39.53	27.11	45.22	14.72
Merged-chr15-59819317-3	chr15	59819193	59819393	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24334.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	16.15	15.59	37.65	16.49	9.82	25.4	19.27	30.11	41.7	22.59	55.78	19.74
Merged-chr14-18893844-1	chr14	18893744	18893944	+	985.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360328)	promoter-TSS (NM_001360328)	-73.0	NM_144839	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	9.29	5.28	6.85	5.23	13.5	19.44	8.64	28.15	5.9	6.03	11.56	5.33
Merged-chr17-86961697-2	chr17	86961591	86961791	+	985.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1420.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	16.15	9.56	17.68	24.13	20.46	13.48	16.94	21.25	5.11	9.04	7.03	6.27
Merged-chr4-134758672-3	chr4	134758577	134758777	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 2 of 8)	intron (NM_145554, intron 2 of 8)	9327.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	17.36	9.31	25.1	12.87	18.82	25.09	14.28	20.19	14.16	18.08	22.61	19.74
Merged-chr9-88960201-3	chr9	88960092	88960292	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	3272.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	23.42	27.92	26.24	14.08	22.09	45.47	21.26	5.52	34.03	50.21	43.21	17.54
Merged-chr12-71136580-3	chr12	71136486	71136686	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029818)	promoter-TSS (NM_029818)	89.0	NM_001024853	30056.0	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	13.73	19.62	14.26	22.93	24.14	27.91	20.59	17.61	15.14	9.04	25.12	9.4
Merged-chr8-70273125-3	chr8	70273036	70273236	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9863.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	17.77	15.85	11.41	10.86	15.55	25.71	13.62	27.34	25.37	16.57	42.21	25.37
Merged-chr10-78396397-3	chr10	78396315	78396515	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12130.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	15.34	11.07	17.68	14.48	24.55	23.2	12.62	19.91	19.08	22.59	34.67	14.1
Merged-chr10-80153012-3	chr10	80152895	80153095	+	985.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	3313.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	18.17	15.85	14.83	6.44	19.64	28.85	9.97	14.69	17.9	41.17	21.1	13.47
Merged-chr15-98928741-3	chr15	98928654	98928854	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GCTTG)n|Simple_repeat|Simple_repeat	5636.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	25.44	17.61	15.4	14.88	20.46	17.87	5.31	12.62	25.18	12.55	20.1	15.66
Merged-chr3-60616329-3	chr3	60616236	60616436	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 6 of 7)	intron (NM_001253711, intron 6 of 7)	115157.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	21.0	14.09	6.85	19.71	16.77	33.24	12.29	18.93	26.16	26.61	24.12	20.36
Merged-chr8-85510943-3	chr8	85510832	85511032	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 5 of 11)	intron (NM_173866, intron 5 of 11)	18315.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	15.75	26.41	28.52	16.49	19.23	36.06	13.29	23.86	21.44	14.56	24.62	12.22
Merged-chr18-82821658-3	chr18	82821556	82821756	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-34241.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	15.34	12.58	8.56	14.08	11.45	18.81	17.61	19.29	21.24	13.05	9.04	10.65
Merged-chr3-88772618-3	chr3	88772525	88772725	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018804)	promoter-TSS (NM_018804)	-26.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	21.4	20.12	22.82	18.9	32.73	51.43	3.32	11.72	32.06	28.12	27.64	14.41
Merged-chr7-6154302-3	chr7	6154193	6154393	+	985.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	MIR|SINE|MIR	1678.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	15.75	19.37	17.11	20.91	30.27	10.03	21.59	29.92	26.75	18.08	32.66	22.24
Merged-chr11-79652464-3	chr11	79652365	79652565	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	22621.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	25.44	19.37	23.96	17.7	17.18	20.07	9.97	14.44	25.96	19.58	39.7	21.62
Merged-chr7-25297615-3	chr7	25297516	25297716	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357350, exon 1 of 5)	5' UTR (NM_001357350, exon 1 of 5)	339.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	20.19	17.36	27.38	8.85	17.59	21.64	11.96	15.7	17.11	18.58	21.61	16.92
Merged-chr2-32361681-3	chr2	32361582	32361782	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1328.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	12.92	13.08	14.26	10.86	22.09	29.79	9.97	11.92	20.85	23.1	24.12	23.18
Merged-chr19-16326083-3	chr19	16325997	16326197	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-11093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	26.65	28.42	24.53	32.98	11.86	27.91	10.63	23.8	26.36	28.62	36.68	15.66
Merged-chr11-106306007-3	chr11	106305893	106306093	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4097.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	15.34	12.58	9.7	8.04	23.73	24.77	17.61	20.94	31.27	31.63	27.64	18.17
Merged-chr13-81176274-3	chr13	81176158	81176358	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	212184.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.11	14.59	13.12	11.26	15.96	31.36	18.27	12.93	24.19	19.08	34.17	6.58
Merged-chr10-43849703-3	chr10	43849622	43849822	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23815.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	16.96	24.9	27.38	20.11	20.86	24.77	15.94	18.7	29.31	19.58	24.62	25.06
Merged-chr8-128268110-3	chr8	128268018	128268218	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10107.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	27.05	14.84	19.97	24.53	19.23	26.03	11.63	21.11	24.98	6.03	14.07	10.96
Merged-chr5-64960093-3	chr5	64959997	64960197	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359180)	promoter-TSS (NM_001359180)	-1.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	30.69	24.65	25.67	18.5	23.73	27.59	8.97	28.57	38.75	20.08	32.16	13.16
Merged-chrX-109013559-3	chrX	109013600	109013800	+	985.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016710)	promoter-TSS (NM_016710)	-320.0	NM_016710	50887.0	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	10.9	8.55	10.84	18.1	10.23	19.13	13.95	8.8	15.93	14.06	26.13	15.04
Merged-chr5-146963761-3	chr5	146963658	146963858	+	985.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256101)	promoter-TSS (NM_001256101)	39.0	NM_001256101	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	7.67	18.11	13.69	20.51	18.0	13.17	15.28	12.39	20.26	12.55	28.64	14.41
Merged-chr13-41487234-3	chr13	41487090	41487290	+	985.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001111324, exon 1 of 8)	5' UTR (NM_001111324, exon 1 of 8)	170.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.48	12.58	20.54	11.26	24.14	18.5	18.93	14.1	10.03	15.57	9.55	12.53
Merged-chr1-152019314-3	chr1	152019220	152019420	+	985.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	71000.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	18.98	9.81	27.38	17.29	21.68	25.4	13.95	25.82	23.6	18.58	14.57	14.41
Merged-chr5-138227514-3	chr5	138227407	138227607	+	985.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013773, intron 1 of 5)	URR1B|DNA|hAT-Charlie	1603.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	51.69	32.7	84.43	58.72	57.68	65.85	61.78	49.57	31.08	23.6	16.08	20.99
Merged-chr18-34550137-1	chr18	34550037	34550237	+	985.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7809.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	1.62	2.52	2.85	3.22	4.09	4.08	1.0	3.08	13.96	8.03	17.59	12.22
Merged-chr11-103360444-3	chr11	103360335	103360535	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183288, exon 3 of 3)	exon (NM_183288, exon 3 of 3)	3257.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	28.67	29.43	11.41	22.12	28.23	35.43	16.61	26.05	34.62	46.19	62.31	24.75
Merged-chr2-25451362-3	chr2	25451247	25451447	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5496.0	NM_027085	69454.0	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	27.05	33.45	26.81	5.63	14.32	44.21	2.99	2.78	20.85	24.1	17.59	3.13
Merged-chr15-27675798-3	chr15	27675699	27675899	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5743.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	18.57	14.09	14.26	18.9	23.32	18.81	18.27	22.77	17.11	13.05	21.1	13.16
Merged-chr4-54195941-1	chr4	54195841	54196041	+	985.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	369896.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.85	7.55	2.85	2.82	4.91	16.31	9.63	11.3	1.38	0.0	1.0	2.51
Merged-chr11-116397621-1	chr11	116397521	116397721	+	985.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 1 of 18)	URR1B|DNA|hAT-Charlie	15411.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.23	2.52	6.85	2.41	6.95	2.82	0.66	2.72	23.8	18.58	19.09	12.22
Merged-chr10-4334468-3	chr10	4334362	4334562	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53013.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	14.54	11.32	22.25	20.11	35.18	41.08	11.96	35.83	14.75	5.52	23.11	12.22
Merged-chr5-147758869-3	chr5	147758802	147759002	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32914.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	16.15	13.83	25.1	26.95	11.45	14.74	8.97	19.32	29.9	29.62	29.14	26.63
Merged-chr11-26755789-3	chr11	26755700	26755900	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-29308.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	31.5	11.07	25.1	22.93	18.0	12.86	13.62	33.95	14.75	13.56	20.1	16.6
Merged-chr6-34374022-3	chr6	34373896	34374096	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10251.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	18.17	10.56	22.25	30.97	20.46	22.26	16.94	31.12	33.63	22.09	25.63	16.92
Merged-chr2-101779198-3	chr2	101779103	101779303	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	18504.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	25.04	22.64	44.5	33.78	18.41	13.8	16.94	26.24	13.18	14.56	38.69	20.05
Merged-chr4-149697916-3	chr4	149697798	149697998	+	985.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008840, intron 1 of 24)	intron (NM_008840, intron 1 of 24)	810.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	18.98	15.09	21.11	15.28	17.18	14.74	12.29	14.8	17.31	13.56	21.1	16.6
Merged-chr9-70942818-3	chr9	70942744	70942944	+	985.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324472, intron 1 of 9)	intron (NM_001324472, intron 1 of 9)	-8036.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	41.19	45.78	33.09	19.71	102.68	104.11	54.48	44.36	80.45	74.31	88.94	33.83
Merged-chr4-109123363-3	chr4	109123273	109123473	+	985.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	RLTR19-int|LTR|ERVK	-5337.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	20.59	14.34	15.97	20.51	20.46	12.54	12.95	15.93	27.14	15.57	37.69	12.84
Merged-chr14-79441636-3	chr14	79441537	79441737	+	985.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10198.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	29.88	22.13	24.53	31.77	31.5	51.74	35.21	41.55	35.01	43.68	50.25	12.22
Merged-chr13-19416247-4	chr13	19416116	19416316	+	985.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20403.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	8.48	7.55	26.24	9.25	11.86	5.96	10.3	12.25	31.27	16.07	17.08	9.4
Merged-chr8-86881398-3	chr8	86881296	86881496	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	3862.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	31.09	33.7	23.39	15.28	34.77	26.65	14.95	17.44	32.65	37.66	24.62	9.4
Merged-chrX-113868006-3	chrX	113867910	113868110	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	569754.0	NM_001142570	93837.0	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund family transcription factor 2	protein-coding	9.69	4.53	18.83	16.89	15.55	10.03	13.62	26.16	54.29	46.7	85.92	31.01
Merged-chr13-99433302-3	chr13	99433237	99433437	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008634, exon 5 of 7)	exon (NM_008634, exon 5 of 7)	-20511.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	14.13	18.61	35.37	36.2	31.09	41.39	27.9	33.03	13.18	12.05	20.1	14.1
Merged-chr1-13426495-3	chr1	13426424	13426624	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52441.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	14.94	18.36	15.97	26.95	11.05	19.76	20.59	13.77	20.06	21.59	17.08	15.04
Merged-chr18-64957712-3	chr18	64957590	64957790	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65837.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	14.54	18.61	14.83	19.31	15.14	15.99	10.96	23.02	70.41	48.2	77.38	52.32
Merged-chr11-105460082-3	chr11	105459986	105460186	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3351.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	23.02	10.82	18.25	16.89	18.0	11.6	14.95	21.79	27.34	12.05	27.13	22.24
Merged-chr5-88767172-3	chr5	88767072	88767272	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2159.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	16.96	19.37	14.83	9.65	31.5	25.4	21.26	34.23	27.54	43.68	27.13	19.42
Merged-chr7-31131038-3	chr7	31130943	31131143	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 18 of 18)	ORR1E|LTR|ERVL-MaLR	-4020.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	30.69	24.9	14.26	24.53	42.96	31.36	19.6	25.65	27.34	21.59	25.12	11.28
Merged-chr19-32758128-3	chr19	32758034	32758234	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008960, exon 1 of 9)	5' UTR (NM_008960, exon 1 of 9)	557.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.27	9.56	14.83	12.47	14.73	12.23	14.62	6.0	11.8	13.05	21.1	10.96
Merged-chr5-73492046-3	chr5	73491927	73492127	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178896, intron 1 of 10)	CpG	1001.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	8.88	17.36	11.98	2.01	11.86	8.15	11.29	6.08	14.75	15.06	20.1	10.02
Merged-chr12-38929112-3	chr12	38928972	38929172	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145361.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	12.92	16.1	12.55	19.71	27.41	15.37	34.88	25.91	16.92	22.59	23.11	13.16
Merged-chr19-46523184-3	chr19	46523092	46523292	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	21544.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	22.21	11.07	15.97	21.72	24.14	16.62	13.95	15.03	15.93	25.61	16.58	18.8
Merged-chr15-68362146-3	chr15	68362043	68362243	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20854.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	19.79	18.36	11.41	16.09	16.77	11.29	12.62	13.43	26.75	12.55	23.11	19.74
Merged-chr15-34067297-3	chr15	34067231	34067431	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-15388.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	13.33	11.82	7.99	9.25	11.45	22.89	17.27	12.11	17.11	19.58	20.1	19.74
Merged-chr7-30216984-3	chr7	30216878	30217078	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14413.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	13.33	19.87	14.26	24.53	31.5	30.73	15.28	18.67	27.54	24.6	52.76	21.93
Merged-chr5-100582648-3	chr5	100582569	100582769	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10464.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	10.5	16.85	26.81	25.74	28.64	19.13	14.62	31.4	32.45	26.61	25.12	18.17
Merged-chr9-100734273-3	chr9	100734189	100734389	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 3 of 33)	intron (NM_009282, intron 3 of 33)	90841.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	20.19	21.88	25.1	45.05	33.14	22.89	22.92	51.17	20.65	14.06	29.65	15.98
Merged-chr6-17410405-2	chr6	17410331	17410531	+	985.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR81|LTR|Gypsy	-53526.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	2.42	5.03	1.71	3.62	11.05	9.72	12.62	5.5	16.92	9.54	15.58	9.4
Merged-chr14-102843875-3	chr14	102843776	102843976	+	985.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138756.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	8.08	10.82	22.82	16.09	11.05	19.76	10.96	25.07	18.69	20.59	22.11	19.42
Merged-chr5-96909476-3	chr5	96909382	96909582	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-11790.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	16.56	14.84	23.39	24.53	14.73	16.31	10.63	16.23	29.11	21.09	36.18	27.88
Merged-chr5-149247750-3	chr5	149247645	149247845	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17259.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	29.48	13.83	38.22	26.55	25.77	12.54	25.91	30.31	21.24	12.55	36.68	20.05
Merged-chr2-35493594-3	chr2	35493505	35493705	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32156.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	18.98	13.83	31.95	21.72	15.96	13.48	10.96	28.32	26.36	17.07	14.07	15.98
Merged-chr4-98109247-3	chr4	98109141	98109341	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	274024.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	18.17	21.88	14.26	4.02	13.91	34.81	16.94	12.11	18.1	24.1	28.64	5.01
Merged-chr11-69664723-3	chr11	69664635	69664835	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110993, intron 4 of 4)	intron (NR_110993, intron 4 of 4)	1435.0	NM_001291058	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	33.92	29.43	30.8	24.94	9.82	13.17	11.96	16.54	24.19	11.55	18.09	19.74
Merged-chr6-137582392-3	chr6	137582295	137582495	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-11386.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	39.98	23.14	25.67	30.97	15.96	19.44	21.26	22.99	19.08	20.59	21.61	9.71
Merged-chr14-102995371-3	chr14	102995288	102995488	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-12751.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	7.27	14.84	7.99	14.88	23.73	19.76	9.3	12.59	19.08	18.58	27.64	16.92
Merged-chr13-76384650-5	chr13	76384465	76384665	+	985.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-396.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	23.02	18.61	15.97	17.29	25.77	11.92	23.58	22.77	8.65	15.06	15.58	14.41
Merged-chr14-121916493-3	chr14	121916391	121916591	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-717.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	12.11	13.58	17.68	14.08	17.18	11.6	10.3	13.88	26.16	21.09	35.68	11.28
Merged-chr5-8917289-3	chr5	8917190	8917390	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008830, intron 9 of 27)	intron (NM_008830, intron 9 of 27)	23569.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	14.13	16.35	17.11	33.38	19.64	19.44	26.91	47.3	27.34	16.57	30.65	17.86
Merged-chr16-91464083-3	chr16	91463984	91464184	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1020.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	27.05	16.6	17.68	13.27	43.77	15.37	27.57	32.38	37.17	41.17	36.18	27.57
Merged-chr17-48287032-3	chr17	48286924	48287124	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-13014.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	21.4	20.63	23.96	11.66	26.59	49.54	24.25	30.98	36.98	35.15	48.74	22.87
Merged-chr10-126986827-3	chr10	126986725	126986925	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	8108.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	11.71	13.08	25.1	20.91	28.64	10.98	23.92	38.13	21.44	22.09	32.16	17.54
Merged-chr5-99212012-3	chr5	99211913	99212113	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40914.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	12.92	15.85	0.0	0.8	9.41	10.03	1.0	3.98	2.56	4.52	4.02	4.07
Merged-chr1-72736547-1	chr1	72736447	72736647	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25287.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	1.76	0.57	0.8	5.73	1.88	3.65	3.56	0.0	0.5	1.0	1.57
Merged-chr14-14703601-2	chr14	14703467	14703667	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360513, intron 1 of 25)	CpG	542.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	15.34	18.11	10.84	17.29	26.18	19.44	19.27	18.53	25.18	26.61	23.62	24.43
Merged-chr2-50837803-1	chr2	50837703	50837903	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71881.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	13.91	4.08	1.0	8.69	7.08	4.52	5.02	4.39
Merged-chr6-123267069-3	chr6	123266967	123267167	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010819, exon 3 of 6)	exon (NM_010819, exon 3 of 6)	4960.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	13.33	8.05	7.99	16.89	26.18	20.7	18.27	17.07	32.85	22.59	30.65	20.68
Merged-chr6-129361370-1	chr6	129361270	129361470	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177686, intron 5 of 5)	intron (NM_177686, intron 5 of 5)	11126.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	1.51	3.42	2.41	5.32	0.94	9.63	8.89	2.75	6.03	4.52	5.33
Merged-chr17-34283829-1	chr17	34283729	34283929	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010378, exon 3 of 5)	exon (NM_010378, exon 3 of 5)	3942.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	6.06	10.56	13.69	1.61	1.64	4.7	0.33	1.65	12.0	0.0	4.02	5.95
Merged-chr6-84027816-3	chr6	84027731	84027931	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	8445.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	12.11	12.07	27.95	27.35	16.77	6.27	14.62	16.54	14.36	10.54	3.01	12.84
Merged-chr10-99264046-1	chr10	99263946	99264146	+	985.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026268, exon 1 of 3)	exon (NM_026268, exon 1 of 3)	815.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	11.71	13.33	13.12	6.03	11.05	7.84	6.64	7.79	11.41	11.55	12.56	11.59
Merged-chr12-108204069-3	chr12	108203974	108204174	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009832)	TTS (NM_009832)	24336.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	21.4	20.37	25.1	19.71	15.96	29.16	41.19	37.26	36.19	18.08	34.17	26.63
Merged-chr4-116877265-3	chr4	116877175	116877375	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029912)	promoter-TSS (NM_001029912)	-127.0	NM_001029912	74464.0	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	8.48	11.07	7.42	5.63	11.86	13.8	16.94	12.73	17.9	10.54	19.09	5.64
Merged-chr5-110386241-5	chr5	110386155	110386355	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	872.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	8.48	8.3	11.41	5.63	10.64	15.05	10.96	3.28	20.06	15.06	20.1	8.14
Merged-chr10-68724573-2	chr10	68724503	68724703	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	857.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.44	5.53	10.84	6.44	12.68	6.59	18.6	17.16	27.73	25.61	37.69	20.36
Merged-chr12-98734667-3	chr12	98734568	98734768	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-23.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	22.21	23.9	23.39	27.35	34.36	21.95	15.94	29.86	33.44	19.58	36.18	10.34
Merged-chr7-80343131-3	chr7	80343084	80343284	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026812)	promoter-TSS (NM_026812)	47.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	13.33	16.6	28.52	12.87	20.86	15.05	8.3	19.65	28.72	23.6	28.14	17.86
Merged-chr13-97129297-3	chr13	97129186	97129386	+	984.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021552)	TTS (NM_021552)	8640.0	NM_021552	59050.0	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	19.38	21.13	27.95	18.5	20.86	13.17	11.63	16.85	22.42	13.56	24.62	15.66
Merged-chr13-74462777-3	chr13	74462699	74462899	+	984.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31151.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	31.09	28.67	15.97	54.3	42.14	23.52	51.15	53.05	34.62	30.13	62.81	28.19
Merged-chr6-29848934-3	chr6	29848808	29849008	+	984.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	-4833.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	11.31	10.56	17.11	9.25	19.23	19.13	16.28	14.78	15.14	23.1	13.06	13.47
Merged-chr19-9135648-3	chr19	9135550	9135750	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025610)	promoter-TSS (NM_025610)	-84.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	41.59	39.99	29.66	32.58	35.18	40.76	20.26	39.9	35.8	16.07	30.65	11.9
Merged-chr3-142594771-3	chr3	142594660	142594860	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010259)	promoter-TSS (NM_010259)	-87.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	20.59	9.06	36.51	19.71	8.59	13.48	20.26	21.59	24.19	33.14	36.68	25.06
Merged-chr18-61394990-3	chr18	61394898	61395098	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	2902.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	9.29	19.37	21.11	11.66	32.73	32.93	14.62	22.4	33.04	35.15	34.17	22.56
Merged-chr16-97961555-3	chr16	97961472	97961672	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1050.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	10.09	17.36	7.99	18.5	11.86	13.17	14.95	16.09	18.49	19.58	14.57	14.1
Merged-chr1-34473233-3	chr1	34473140	34473340	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 13 of 14)	intron (NM_011206, intron 13 of 14)	13494.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	14.13	10.31	25.1	18.9	21.27	10.98	10.63	18.73	20.65	30.63	30.15	20.05
Merged-chr17-80728187-3	chr17	80728083	80728283	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-158.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	38.36	29.18	19.4	14.08	36.0	43.27	24.91	37.88	53.5	41.17	64.32	19.11
Merged-chr5-137817660-3	chr5	137817550	137817750	+	984.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360023, intron 13 of 16)	intron (NM_001360023, intron 13 of 16)	18628.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	17.36	15.85	13.12	11.26	15.55	21.01	10.96	12.08	17.7	18.08	21.1	13.78
Merged-chr15-53373973-3	chr15	53373859	53374059	+	984.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-27776.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	33.11	24.4	27.95	28.56	27.0	22.58	8.64	28.15	33.44	37.66	20.6	40.1
Merged-chr2-6363379-3	chr2	6363285	6363485	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	10649.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	21.0	22.39	26.24	23.73	22.91	20.07	17.61	32.19	22.03	16.57	17.59	11.9
Merged-chr8-94955274-3	chr8	94955182	94955382	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-21827.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	17.36	13.58	21.11	12.07	14.32	10.66	17.27	13.51	30.29	21.09	34.17	11.28
Merged-chr19-24417833-3	chr19	24417726	24417926	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	59648.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	23.02	15.59	21.68	30.16	13.91	13.48	15.94	21.84	38.35	28.62	32.16	20.99
Merged-chr8-84707481-3	chr8	84707402	84707602	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6045.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	25.84	18.11	21.11	11.26	28.64	30.1	20.93	22.57	22.82	28.12	31.15	15.04
Merged-chr2-129512338-3	chr2	129512262	129512462	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	L1_Mus2|LINE|L1	24240.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	23.42	19.87	23.96	28.15	35.18	31.36	37.54	11.94	25.37	17.57	23.11	17.23
Merged-chrX-48428803-3	chrX	48428694	48428894	+	984.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	34338.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	24.63	18.86	17.11	5.23	28.64	42.02	20.59	13.04	33.44	44.19	41.2	12.53
Merged-chr10-128090767-3	chr10	128090656	128090856	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016774)	TTS (NM_016774)	-2027.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	21.0	19.62	18.83	6.84	24.55	25.09	9.97	10.46	28.91	19.58	18.09	12.22
Merged-chr3-52270097-3	chr3	52270017	52270217	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	1780.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	10.9	16.35	12.55	10.46	22.5	14.42	11.63	17.41	19.87	13.05	22.61	17.54
Merged-chr9-80163543-3	chr9	80163451	80163651	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1483.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	16.96	12.07	25.1	18.1	18.41	18.5	7.97	22.29	15.93	18.58	19.09	4.39
Merged-chr9-5308144-3	chr9	5308031	5308231	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-718.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	22.61	17.36	13.12	24.13	48.27	32.93	16.61	18.62	28.72	34.65	29.14	18.17
Merged-chr19-5989222-3	chr19	5989111	5989311	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007600, exon 22 of 22)	3' UTR (NM_007600, exon 22 of 22)	-3068.0	NM_198650	381203.0	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	23.02	14.34	17.68	18.9	33.55	20.7	19.6	28.35	21.64	19.08	7.54	9.71
Merged-chr14-32932481-4	chr14	32932422	32932622	+	984.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-58860.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	22.21	19.12	15.4	10.05	22.09	30.1	14.28	8.3	23.8	27.62	22.61	8.46
Merged-chr10-77267214-3	chr10	77267120	77267320	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030262, exon 8 of 9)	exon (NM_030262, exon 8 of 9)	7920.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	26.25	9.81	41.07	45.85	26.59	47.04	46.84	38.86	37.57	28.12	63.31	42.6
Merged-chr7-81203713-3	chr7	81203584	81203784	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10D2|LTR|ERVK	-10120.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	13.73	11.57	16.54	12.47	43.36	40.14	51.82	11.66	68.64	55.73	75.37	31.95
Merged-chr19-45591899-3	chr19	45591758	45591958	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31273.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	28.67	32.45	35.37	37.0	38.05	40.14	16.94	39.9	23.01	9.04	10.55	14.41
Merged-chr9-42944944-3	chr9	42944854	42945054	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-583.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	14.94	14.09	13.69	21.72	21.68	24.46	4.65	12.56	18.69	16.07	24.62	9.71
Merged-chr4-35166026-3	chr4	35165935	35166135	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8551.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	13.73	12.83	17.68	12.07	55.64	39.2	26.24	50.86	46.62	39.67	49.75	24.12
Merged-chr2-165287783-3	chr2	165287666	165287866	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	21.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	12.52	11.07	19.4	11.66	20.86	26.65	12.62	14.02	15.74	20.08	20.1	12.53
Merged-chr14-77511631-1	chr14	77511531	77511731	+	984.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	Lx5c|LINE|L1	-4763.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.4	1.51	0.0	0.0	0.0	0.63	0.0	0.0	18.29	14.56	33.16	11.9
Merged-chr1-182341185-3	chr1	182341060	182341260	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175127, intron 1 of 4)	CpG	446.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	11.71	4.78	12.55	9.25	14.73	7.53	11.96	7.71	15.93	21.59	18.59	15.04
Merged-chr17-12769677-3	chr17	12769538	12769738	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	68.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	21.4	19.62	11.98	12.07	24.14	24.77	15.94	15.76	26.16	30.63	19.09	23.49
Merged-chr2-164486323-3	chr2	164486262	164486462	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026797)	promoter-TSS (NM_026797)	-93.0	NM_026797	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	14.13	17.61	15.4	20.51	21.68	21.95	9.97	18.81	9.24	16.57	7.03	10.65
Merged-chr17-55751357-3	chr17	55751251	55751451	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	1367.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	14.94	14.09	4.56	8.85	16.36	23.83	15.61	17.24	15.74	13.56	26.63	5.01
Merged-chr10-26773169-3	chr10	26773039	26773239	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	627.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	14.13	4.28	10.84	6.03	11.45	14.74	8.64	16.15	14.55	8.03	16.58	7.21
Merged-chr3-142521491-3	chr3	142521407	142521607	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153564, exon 11 of 11)	3' UTR (NM_153564, exon 11 of 11)	-8829.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	10.09	29.68	27.38	5.23	6.14	28.22	11.29	10.18	14.95	7.53	16.58	10.65
Merged-chr10-17221645-3	chr10	17221553	17221753	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-125871.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	10.09	13.08	19.97	18.9	38.86	38.88	28.57	40.37	36.98	41.17	33.16	21.3
Merged-chr17-71294857-2	chr17	71294819	71295019	+	984.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	L2c|LINE|L2	16092.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	1.21	0.5	12.55	2.82	8.18	7.84	6.98	6.73	11.6	10.54	10.55	5.95
Merged-chr19-5723049-3	chr19	5722946	5723146	+	984.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	3271.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	18.57	19.37	26.81	24.53	26.18	29.48	11.29	14.38	42.29	24.6	39.19	18.8
Merged-chr11-106153707-3	chr11	106153612	106153812	+	984.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 15 of 15)	intron (NM_011947, intron 15 of 15)	6215.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	24.63	13.58	35.37	35.8	22.5	26.65	22.59	33.7	33.04	15.57	35.68	20.68
Merged-chr7-132852567-3	chr7	132852464	132852664	+	984.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347629)	promoter-TSS (NM_001347629)	83.0	NM_028095	72096.0	Mm.28631	NM_028095	ENSMUSG00000030960	Eef1akmt2	2010208K18Rik|Mettl10	EEF1A lysine methyltransferase 2	protein-coding	27.46	26.66	14.83	36.6	19.23	28.22	30.89	27.2	26.16	29.12	46.23	37.28
Merged-chr17-5440447-6	chr17	5440371	5440571	+	984.569458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-211.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	8.48	12.83	21.68	13.67	14.32	11.29	14.28	9.56	11.6	13.05	10.05	18.48
Merged-chr5-8353882-3	chr5	8353788	8353988	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	L1_Mus2|LINE|L1	14272.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	59.36	67.66	86.71	67.57	38.05	44.21	80.05	17.33	73.56	65.27	94.47	48.87
Merged-chr5-65696898-3	chr5	65696797	65696997	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081321, exon 2 of 32)	exon (NM_001081321, exon 2 of 32)	959.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	27.46	18.11	14.83	22.52	24.14	17.87	15.94	18.2	24.39	20.59	15.07	14.41
Merged-chr7-101553522-3	chr7	101553423	101553623	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2279.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	28.27	24.4	20.54	16.89	14.73	56.13	12.95	22.23	37.57	40.17	35.68	8.46
Merged-chr7-102417597-3	chr7	102417502	102417702	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 6 of 11)	intron (NM_009287, intron 6 of 11)	-24093.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	16.96	20.63	15.4	18.9	20.86	13.17	11.96	12.62	19.47	23.6	19.6	10.34
Merged-chr5-114131202-3	chr5	114131117	114131317	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	61.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	28.27	29.93	19.4	39.01	26.18	40.45	26.24	27.56	31.47	21.59	41.2	23.81
Merged-chr14-66277138-3	chr14	66277052	66277252	+	984.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	3900.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	24.23	13.83	15.4	22.52	19.23	9.72	12.29	20.47	23.6	25.11	24.12	16.92
Merged-chr5-43672333-2	chr5	43672240	43672440	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	9961.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	2.83	8.8	4.56	16.89	13.5	18.19	34.21	20.61	4.13	4.52	6.53	4.39
Merged-chr17-87156363-3	chr17	87156252	87156452	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38590.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	16.56	20.63	25.67	36.6	33.55	24.15	30.56	58.77	19.08	22.59	17.59	15.98
Merged-chr18-52571006-2	chr18	52570911	52571111	+	984.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41144.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	2.42	9.31	6.85	4.42	8.18	15.99	8.97	8.21	15.93	25.61	37.18	6.58
Merged-chr7-81572302-3	chr7	81572199	81572399	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	1007.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	13.73	20.63	19.4	6.84	21.68	19.13	12.62	9.17	22.82	26.11	17.59	6.58
Merged-chr12-70910424-3	chr12	70910332	70910532	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27425.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	14.54	11.32	5.7	14.08	17.18	19.44	8.64	19.51	19.47	24.1	30.15	15.04
Merged-chr13-81351721-4	chr13	81351684	81351884	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	281360.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	8.88	10.06	13.69	11.66	24.96	22.89	20.59	32.89	29.5	27.11	25.12	14.72
Merged-chr1-191023328-3	chr1	191023231	191023431	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081259, intron 1 of 9)	L2b|LINE|L2	-2020.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	12.92	21.13	14.26	22.12	21.27	30.73	15.61	31.57	36.19	19.08	27.64	18.8
Merged-chr9-21184147-3	chr9	21184067	21184267	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310750)	promoter-TSS (NM_001310750)	66.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	25.04	20.37	38.22	18.9	27.41	47.66	21.59	33.08	34.22	25.61	30.15	11.59
Merged-chr13-95638990-3	chr13	95638912	95639112	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-20546.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	28.27	16.1	15.4	17.7	5.73	14.42	10.96	9.36	26.75	25.11	30.15	12.53
Merged-chr11-22857274-3	chr11	22857168	22857368	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2467.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	12.52	14.34	21.68	20.91	16.77	17.87	12.95	31.26	21.44	24.1	27.64	10.02
Merged-chr9-38741584-3	chr9	38741473	38741673	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 18 of 18)	intron (NM_001145957, intron 18 of 18)	-11223.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	12.92	12.07	14.83	31.37	28.64	22.26	23.92	42.22	33.63	28.12	55.78	30.39
Merged-chr4-119053841-3	chr4	119053733	119053933	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131914)	TTS (NR_131914)	15278.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	15.34	14.59	36.51	42.23	19.23	13.8	14.95	21.22	26.36	14.06	27.13	18.48
Merged-chr13-97340673-3	chr13	97340558	97340758	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94312.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	11.31	13.33	26.24	16.49	3.68	11.92	4.32	12.62	13.96	9.54	21.61	11.59
Merged-chr12-111671647-3	chr12	111671547	111671747	+	984.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021273, intron 2 of 7)	CpG-3541	691.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	10.09	11.07	18.25	19.71	9.0	21.32	14.62	13.43	24.19	17.57	19.09	18.48
Merged-chr18-60789453-3	chr18	60789349	60789549	+	984.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14400.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	17.77	10.31	31.38	15.69	10.23	6.9	14.62	14.5	62.55	40.67	80.9	52.94
Merged-chr15-73732232-2	chr15	73732133	73732333	+	984.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7303.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.86	9.31	7.42	7.24	15.55	14.42	15.28	11.19	20.26	15.57	21.1	10.65
Merged-chr2-6330810-3	chr2	6330723	6330923	+	984.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	8066.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	18.17	5.53	14.26	18.1	17.18	15.68	15.28	43.01	21.44	15.06	21.1	11.28
Merged-chr3-88491335-3	chr3	88491225	88491425	+	984.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1987.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	21.0	17.36	14.83	12.47	29.86	23.83	29.23	22.82	24.59	16.57	36.18	12.53
Merged-chr19-47256112-3	chr19	47256018	47256218	+	984.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163480, intron 4 of 5)	intron (NM_001163480, intron 4 of 5)	17471.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	25.84	30.94	35.37	24.53	28.64	31.98	11.63	28.01	21.64	15.06	33.16	10.02
Merged-chr7-90132036-10	chr7	90131885	90132085	+	984.386658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	1772.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	14.54	12.83	20.54	14.88	10.64	17.25	17.27	12.5	21.44	21.59	33.16	15.98
Merged-chr4-126109805-3	chr4	126109691	126109891	+	984.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	5834.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	20.59	15.34	34.8	10.05	20.05	24.15	23.58	20.24	17.9	34.14	22.11	15.04
Merged-chr3-100160785-3	chr3	100160652	100160852	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175552, intron 2 of 26)	intron (NM_175552, intron 2 of 26)	1655.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	23.42	16.6	18.25	13.27	17.59	17.56	27.9	22.4	15.93	11.05	11.56	8.14
Merged-chr4-62481422-3	chr4	62481314	62481514	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	1347.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	24.63	20.37	18.83	27.35	13.91	24.15	13.29	19.29	24.0	18.58	27.64	15.04
Merged-chr5-143329208-3	chr5	143329124	143329324	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028379)	promoter-TSS (NM_028379)	14.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	18.17	10.31	16.54	16.89	13.5	17.87	7.64	11.64	17.51	20.08	18.09	13.16
Merged-chr10-80680241-3	chr10	80680139	80680339	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3946.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	18.98	15.34	21.68	23.33	12.27	21.64	28.23	57.03	33.63	14.06	16.08	20.68
Merged-chr8-121951185-3	chr8	121951106	121951306	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016812, intron 1 of 13)	CpG	714.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	8.08	10.06	6.28	5.63	11.05	13.17	3.99	15.39	20.06	18.58	23.11	13.78
Merged-chr14-120407014-3	chr14	120406913	120407113	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-71448.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	6.06	16.85	23.96	12.07	22.09	13.17	15.94	33.62	12.98	15.57	26.63	14.41
Merged-chr11-82908391-3	chr11	82908304	82908504	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145431)	promoter-TSS (NM_145431)	-9.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	22.61	24.4	15.97	23.33	12.68	22.26	5.98	18.73	25.37	25.61	30.65	20.99
Merged-chr17-32635068-3	chr17	32635027	32635227	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001100187, exon 13 of 13)	exon (NM_001100187, exon 13 of 13)	13808.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	14.94	18.61	13.69	15.69	15.96	18.19	11.63	13.35	20.06	13.56	25.63	6.89
Merged-chr18-12230179-3	chr18	12230085	12230285	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	6201.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	20.59	13.33	16.54	31.37	67.5	58.32	49.16	106.68	20.46	12.55	21.61	14.72
Merged-chr4-46507467-3	chr4	46507362	46507562	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029077, intron 5 of 5)	CpG	18133.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	43.21	16.85	15.4	16.49	57.68	38.26	34.55	27.64	26.75	26.11	18.59	18.48
Merged-chr6-134027271-3	chr6	134027196	134027396	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8404.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	33.11	8.8	5.7	6.44	15.96	38.57	16.28	16.54	23.21	13.05	12.06	11.9
Merged-chr2-166030437-3	chr2	166030353	166030553	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	37816.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	15.34	16.85	20.54	23.33	11.86	14.11	13.29	16.32	25.37	32.64	28.64	16.92
Merged-chr12-12289850-3	chr12	12289745	12289945	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27706.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	19.38	16.35	22.82	16.09	17.59	10.03	16.61	15.39	29.9	20.59	24.12	20.99
Merged-chr1-21036040-3	chr1	21035949	21036149	+	984.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	43176.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	53.3	26.16	69.6	63.15	54.0	35.75	51.15	77.22	19.47	9.54	30.65	15.98
Merged-chr13-62294534-2	chr13	62294434	62294634	+	984.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	88640.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	16.96	30.18	21.68	30.57	33.55	25.09	12.29	17.64	0.0	0.0	0.0	0.0
Merged-chr4-63557465-3	chr4	63557357	63557557	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	22.61	16.1	29.09	12.87	35.59	27.28	27.57	35.97	19.47	17.07	25.12	13.16
Merged-chr2-119167768-3	chr2	119167666	119167866	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-22.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	19.38	17.36	22.82	20.51	24.14	37.32	23.92	19.65	18.88	20.08	17.59	9.71
Merged-chr11-78887196-3	chr11	78887094	78887294	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33593.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	31.5	46.78	45.64	15.69	20.86	52.68	21.59	10.65	59.01	44.69	36.68	12.22
Merged-chr17-57335873-3	chr17	57335782	57335982	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22804.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	20.59	22.13	29.66	13.27	22.5	30.42	14.95	19.29	40.71	38.66	32.66	22.24
Merged-chr1-131038315-3	chr1	131038207	131038407	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18462.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	27.86	37.23	34.23	12.07	45.82	48.29	26.57	22.91	56.25	72.3	58.29	29.13
Merged-chr8-10841283-3	chr8	10841178	10841378	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41176.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	25.04	29.43	19.97	30.57	29.05	26.65	40.86	43.96	17.31	13.56	21.1	11.28
Merged-chr2-119357060-1	chr2	119356960	119357160	+	984.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5818.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	1.62	1.51	1.14	0.0	1.23	2.51	0.0	0.56	33.83	33.64	32.16	11.28
Merged-chrX-99046646-3	chrX	99046543	99046743	+	984.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	4062.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	42.4	25.15	45.64	42.63	33.55	13.8	28.23	36.95	38.35	19.58	46.73	41.04
Merged-chr12-111809987-3	chr12	111809889	111810089	+	984.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028875, intron 3 of 7)	intron (NM_028875, intron 3 of 7)	3890.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	13.33	12.83	15.4	14.48	56.46	61.46	30.56	58.43	53.3	54.23	75.87	35.09
Merged-chr9-22118246-3	chr9	22118168	22118368	+	984.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1073.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	28.67	25.66	16.54	19.31	26.59	20.07	14.95	22.93	32.85	37.16	30.65	23.81
Merged-chr9-123851411-7	chr9	123851402	123851602	+	984.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011798)	TTS (NM_011798)	159.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	16.15	26.91	28.52	29.36	21.27	25.71	18.6	18.11	31.27	37.16	39.19	26.31
Merged-chr10-4388048-3	chr10	4387957	4388157	+	984.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359811)	promoter-TSS (NM_001359811)	51.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	28.67	23.9	10.84	14.88	29.05	35.12	24.25	31.01	34.42	38.66	30.15	22.24
Merged-chr11-51931377-3	chr11	51931288	51931488	+	984.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-36243.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	22.61	22.89	35.94	12.47	25.77	20.7	16.94	25.12	35.21	16.07	18.09	17.54
Merged-chr12-76538075-3	chr12	76537973	76538173	+	984.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4513.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	12.92	14.84	34.8	20.91	18.41	13.48	19.6	17.86	17.9	4.52	22.61	15.35
Merged-chr16-76532947-3	chr16	76532861	76533061	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15834.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	25.04	20.63	14.26	17.29	24.55	15.68	19.93	33.0	32.26	26.61	22.61	19.11
Merged-chr8-124434568-3	chr8	124434459	124434659	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_171824)	promoter-TSS (NM_171824)	-623.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	15.75	16.85	26.24	16.49	21.27	23.83	9.3	26.61	34.42	25.61	35.68	26.0
Merged-chr18-4009298-3	chr18	4009183	4009383	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156549.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	15.34	3.27	26.24	22.12	22.91	27.28	32.55	42.62	19.87	17.57	23.62	7.83
Merged-chr14-54908851-3	chr14	54908749	54908949	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360406, exon 5 of 10)	exon (NM_001360406, exon 5 of 10)	4283.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	5.25	12.32	11.98	19.71	43.36	36.06	15.61	25.82	39.53	24.6	39.19	46.05
Merged-chr19-36918973-3	chr19	36918888	36919088	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028263, exon 2 of 2)	exon (NM_028263, exon 2 of 2)	611.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	15.34	19.37	28.52	22.52	17.59	21.64	18.27	22.79	21.24	16.57	26.63	17.54
Merged-chr10-10287642-3	chr10	10287471	10287671	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	184743.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	8.88	8.3	2.28	6.44	21.68	14.42	16.28	19.68	13.77	9.54	9.04	7.52
Merged-chr3-105802122-2	chr3	105802011	105802211	+	984.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	-730.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	8.08	4.78	6.85	5.23	19.64	14.74	9.63	14.44	12.78	6.03	17.08	10.02
Merged-chr11-115076809-3	chr11	115076717	115076917	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14614.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	21.4	13.33	39.93	26.95	27.41	25.71	37.87	35.78	29.5	8.54	22.11	20.36
Merged-chrX-19166437-3	chrX	19166327	19166527	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19456.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	12.92	18.36	35.37	22.12	20.05	16.62	19.93	22.68	20.65	28.62	28.14	15.98
Merged-chr18-65690828-6	chr18	65690730	65690930	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7438.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.88	12.58	12.55	14.88	9.0	6.9	17.94	12.67	10.82	9.04	9.55	16.29
Merged-chr13-109288331-3	chr13	109288239	109288439	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-36405.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	14.13	8.55	15.97	18.1	23.32	11.29	21.26	29.8	27.73	21.09	35.68	13.47
Merged-chr16-24637572-3	chr16	24637421	24637621	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-84334.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	12.11	16.35	30.23	16.89	11.45	36.06	15.28	19.82	27.34	14.06	29.65	8.14
Merged-chr9-102879707-3	chr9	102879606	102879806	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042607, intron 6 of 14)	intron (NM_001042607, intron 6 of 14)	44786.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	20.59	17.1	19.97	15.69	27.0	12.23	12.62	24.34	27.14	25.61	40.7	13.16
Merged-chr11-78245722-3	chr11	78245609	78245809	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	-6.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	16.96	14.34	11.41	14.88	24.55	29.79	5.98	14.02	35.4	32.13	36.18	23.81
Merged-chr2-11439483-3	chr2	11439380	11439580	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-40980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	22.21	14.09	34.8	22.52	32.32	22.26	27.9	21.87	35.4	30.13	34.67	27.88
Merged-chr6-39724941-3	chr6	39724866	39725066	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139294, intron 1 of 21)	CpG	497.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	17.77	14.09	14.83	14.88	8.59	25.09	11.96	20.19	30.29	31.13	33.16	17.86
Merged-chr11-32347803-3	chr11	32347690	32347890	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177364)	promoter-TSS (NM_177364)	-21.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	29.88	22.64	20.54	12.47	14.73	8.78	9.63	19.93	18.88	19.58	22.11	14.41
Merged-chr15-84231298-3	chr15	84231197	84231397	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133167)	promoter-TSS (NM_133167)	-746.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	17.77	15.85	22.25	22.52	22.09	18.81	8.3	22.15	22.03	25.61	27.64	15.04
Merged-chr18-6459553-3	chr18	6459457	6459657	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	31089.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	23.42	17.61	26.81	21.72	6.55	20.38	9.97	26.78	32.85	21.59	32.66	26.94
Merged-chr1-173848059-1	chr1	173847959	173848159	+	984.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	32128.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.4	1.01	0.0	0.0	15.96	10.03	0.66	0.0	0.0	1.0	0.0	0.63
Merged-chr13-110541508-2	chr13	110541429	110541629	+	984.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	146485.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	10.5	2.26	10.84	5.63	15.14	20.07	15.61	13.4	26.16	26.61	19.09	9.08
Merged-chr9-104337758-1	chr9	104337658	104337858	+	984.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019807)	promoter-TSS (NM_019807)	-36.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	7.27	8.55	9.13	7.24	17.18	11.29	3.65	17.07	4.52	7.53	5.53	6.89
Merged-chr6-30402280-1	chr6	30402180	30402380	+	984.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311087, intron 1 of 8)	CpG	425.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	5.25	15.34	13.12	7.64	12.27	8.47	8.97	7.74	14.95	10.04	22.11	11.9
Merged-chr8-122556815-3	chr8	122556731	122556931	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5502.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	17.36	19.62	10.84	27.75	27.82	31.04	25.24	44.33	39.53	37.66	65.83	34.15
Merged-chr16-90349858-3	chr16	90349761	90349961	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-36536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	22.21	24.9	26.81	21.32	32.32	33.87	14.95	16.51	37.17	37.66	28.64	12.53
Merged-chr10-98915661-2	chr10	98915550	98915750	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	CpG	498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	15.75	10.06	22.82	12.47	16.77	17.87	19.93	19.63	23.8	25.61	22.61	27.88
Merged-chr6-85154148-3	chr6	85154048	85154248	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16384.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	22.61	22.13	11.98	25.34	20.86	19.13	15.28	18.93	21.44	24.6	33.16	24.43
Merged-chr1-131448537-3	chr1	131448425	131448625	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	78836.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	33.92	19.87	17.11	18.1	33.55	36.06	15.28	23.89	24.98	22.59	16.08	10.65
Merged-chr16-76356117-3	chr16	76355994	76356194	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	16955.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	17.77	14.84	29.66	18.9	7.77	24.46	18.93	25.85	24.59	29.62	25.12	17.23
Merged-chr8-117241265-3	chr8	117241173	117241373	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-15746.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	10.09	10.31	19.4	12.47	20.86	25.4	16.28	27.48	23.6	37.66	44.22	23.18
Merged-chr17-71195890-3	chr17	71195777	71195977	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-8777.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	43.21	24.15	28.52	19.31	30.27	20.7	23.92	26.47	32.85	34.14	23.62	13.78
Merged-chr19-29512312-3	chr19	29512198	29512398	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015567, intron 2 of 3)	L1MB2|LINE|L1	9689.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	27.05	13.33	27.38	26.14	32.32	33.24	27.9	33.95	34.42	32.13	25.63	14.41
Merged-chr15-6624546-3	chr15	6624441	6624641	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	29762.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	16.96	14.84	21.11	8.85	24.14	34.49	16.94	20.27	25.37	30.13	20.1	11.9
Merged-chr6-83868119-3	chr6	83868022	83868222	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36381.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	24.23	13.58	11.98	12.47	20.86	23.52	12.95	14.36	20.46	20.08	20.1	15.66
Merged-chr8-88229019-3	chr8	88228908	88229108	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	29795.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	16.15	11.07	15.97	12.87	19.23	16.93	11.63	19.54	21.64	14.06	32.66	12.84
Merged-chr9-65890243-3	chr9	65890162	65890362	+	983.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026515)	promoter-TSS (NM_026515)	-61.0	NM_026515	68026.0	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	23.42	21.38	15.4	21.72	29.46	29.79	19.27	27.11	26.95	24.1	34.67	12.84
Merged-chr5-96856765-3	chr5	96856664	96856864	+	983.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63379.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	11.71	10.31	23.39	15.69	36.0	25.71	23.25	38.44	19.67	19.58	34.67	12.84
Merged-chr19-6907757-3	chr19	6907648	6907848	+	983.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012021, intron 2 of 5)	intron (NM_012021, intron 2 of 5)	-1950.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	19.79	20.12	11.41	19.71	16.77	32.3	11.29	13.07	26.95	39.16	17.08	14.72
Merged-chr13-60660851-3	chr13	60660728	60660928	+	983.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	58617.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	16.56	17.86	9.13	17.29	35.18	39.2	31.89	41.83	18.49	36.65	24.62	9.4
Merged-chr2-83729549-3	chr2	83729459	83729659	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5162.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	24.23	16.6	26.24	10.05	15.55	35.12	27.57	32.07	75.92	65.78	75.37	41.04
Merged-chr14-30613530-3	chr14	30613421	30613621	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-3211.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	14.54	12.07	36.51	9.25	40.91	63.66	35.21	31.21	24.0	25.61	35.17	14.72
Merged-chr8-124949501-3	chr8	124949397	124949597	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-243.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	19.38	17.1	13.69	13.27	22.5	23.83	13.62	17.16	28.13	30.13	41.71	13.16
Merged-chr7-101837877-3	chr7	101837769	101837969	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-45.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	30.28	27.92	18.25	19.71	26.18	39.2	19.93	29.52	31.27	17.07	16.58	15.04
Merged-chr19-44009075-3	chr19	44008979	44009179	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167905, intron 7 of 7)	intron (NM_001167905, intron 7 of 7)	20168.0	NM_001001446	226143.0	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c23	AW107714|BC034834|Cyp2c44|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 23	protein-coding	26.25	17.1	25.67	17.7	27.0	21.95	20.26	32.64	15.34	16.57	28.64	16.92
Merged-chr9-101075449-3	chr9	101075365	101075565	+	983.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100451, intron 1 of 1)	CpG	703.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	14.94	15.34	21.11	24.13	14.73	16.62	16.61	21.03	29.11	17.57	22.11	18.8
Merged-chr10-40098634-3	chr10	40098542	40098742	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	RSINE1|SINE|B4	43612.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	27.05	24.15	25.1	14.08	34.77	56.44	40.86	22.07	40.32	53.22	49.24	22.24
Merged-chr15-37006572-3	chr15	37006474	37006674	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026521, intron 1 of 3)	intron (NM_026521, intron 1 of 3)	828.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	17.77	19.12	26.24	15.69	32.32	35.43	15.94	33.25	40.32	26.11	49.24	17.86
Merged-chr5-29853247-3	chr5	29853158	29853358	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117322.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	41.59	36.97	65.6	44.24	41.32	50.49	67.1	42.79	28.13	22.09	36.18	9.71
Merged-chr16-49954005-1	chr16	49953905	49954105	+	983.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1825.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	5.65	6.54	6.85	2.82	11.05	22.26	19.27	22.21	5.11	7.53	12.06	5.64
Merged-chr10-66853421-3	chr10	66853317	66853517	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66967.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	29.07	21.38	19.97	15.28	27.41	33.55	22.26	21.64	38.35	33.14	33.67	31.01
Merged-chr13-105054487-3	chr13	105054377	105054577	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	453.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	27.86	26.16	20.54	30.97	30.68	17.87	29.23	32.41	17.11	17.57	15.07	21.3
Merged-chr16-51934187-3	chr16	51934082	51934282	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53105.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	14.94	18.61	17.11	19.71	30.68	27.91	17.61	47.58	52.52	32.13	45.73	29.13
Merged-chr19-42130895-3	chr19	42130798	42130998	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	39.98	25.4	28.52	37.4	43.77	46.1	34.88	44.36	19.47	26.11	24.12	8.77
Merged-chr6-145830364-3	chr6	145830273	145830473	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21990.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	41.59	26.16	43.35	37.0	41.32	61.15	48.5	65.8	39.53	14.06	49.75	23.49
Merged-chr14-14870672-3	chr14	14870558	14870758	+	983.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 21 of 34)	intron (NM_001195229, intron 21 of 34)	49843.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	58.55	42.26	52.48	61.13	29.46	10.66	10.63	30.62	17.7	26.11	27.13	19.74
Merged-chr2-90641595-3	chr2	90641496	90641696	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35619.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	10.9	10.06	15.4	18.5	24.14	41.08	15.61	23.44	28.52	30.63	34.67	23.49
Merged-chr1-69689170-3	chr1	69689064	69689264	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3204.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	16.56	14.09	11.98	29.76	21.68	24.77	19.93	28.71	24.19	18.08	27.13	13.78
Merged-chr7-30589582-3	chr7	30589469	30589669	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	189.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	27.46	21.88	14.26	25.34	33.14	24.77	22.92	15.45	27.34	33.14	19.6	20.99
Merged-chr5-138155819-3	chr5	138155727	138155927	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019747)	promoter-TSS (NM_019747)	-83.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	22.21	23.64	19.4	12.87	28.23	15.99	12.95	17.61	20.65	23.1	33.67	12.22
Merged-chr18-83830134-3	chr18	83830021	83830221	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	256441.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	24.63	17.61	33.66	14.08	24.96	30.42	13.95	30.34	26.16	15.57	37.18	10.34
Merged-chr7-101384685-3	chr7	101384598	101384798	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-828.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.88	13.58	13.69	3.22	22.09	23.2	16.61	12.95	19.47	17.57	15.07	23.18
Merged-chr13-90516117-3	chr13	90516003	90516203	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	389252.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	18.17	10.56	9.13	18.1	83.46	134.52	109.62	137.1	87.53	99.42	132.15	57.95
Merged-chr2-20968595-4	chr2	20968426	20968626	+	983.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033225)	promoter-TSS (NR_033225)	-348.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	10.9	16.1	10.27	14.88	20.05	17.87	17.61	16.04	19.47	15.06	12.56	18.8
Merged-chr2-143948151-3	chr2	143948044	143948244	+	983.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024281, intron 23 of 23)	intron (NM_024281, intron 23 of 23)	32813.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	31.5	14.09	33.09	53.09	26.18	12.86	20.59	32.24	16.92	10.54	35.68	15.98
Merged-chr1-162563436-3	chr1	162563337	162563537	+	983.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7078.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	25.04	14.34	46.21	55.5	11.45	15.99	23.25	37.54	54.88	29.12	71.86	34.46
Merged-chr9-121642151-3	chr9	121642044	121642244	+	983.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-48.0	NM_001357346	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	40.38	19.62	12.55	24.94	15.14	21.64	12.95	22.29	27.14	32.13	47.23	29.45
Merged-chr2-165878253-3	chr2	165878148	165878348	+	983.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	189.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	14.94	25.66	60.47	26.95	22.91	21.64	26.24	32.86	41.3	16.57	46.73	21.62
Merged-chr1-89902385-3	chr1	89902285	89902485	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28791.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	26.25	11.32	21.68	33.38	30.27	26.65	22.59	55.23	17.11	15.57	17.08	4.07
Merged-chr4-142074266-3	chr4	142074199	142074399	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-9999.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	11.71	13.33	9.7	26.55	16.36	17.25	19.6	26.8	35.99	29.12	32.66	17.54
Merged-chr14-30761428-3	chr14	30761331	30761531	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	L2a|LINE|L2	45816.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	31.9	28.42	27.38	37.4	36.82	41.08	36.21	52.18	29.11	18.58	15.58	5.33
Merged-chr6-37426027-3	chr6	37425942	37426142	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	MT2B2|LTR|ERVL	16106.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	24.63	17.1	23.96	20.51	13.09	27.91	47.5	53.02	33.04	31.63	48.24	25.37
Merged-chr2-166730757-3	chr2	166730656	166730856	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16924.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.25	15.09	17.11	18.5	18.0	34.81	18.93	35.52	45.43	34.14	51.25	14.1
Merged-chr1-142468496-1	chr1	142468396	142468596	+	983.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1172201.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	2.42	4.28	5.7	8.45	19.23	4.7	6.98	19.32	4.13	6.03	9.55	4.39
Merged-chr4-63402278-3	chr4	63402163	63402363	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1182.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	8.48	15.34	8.56	4.83	6.55	21.64	10.96	4.91	11.6	16.57	12.56	12.53
Merged-chr6-124787201-1	chr6	124787101	124787301	+	983.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7474.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	8.48	4.53	12.55	5.23	15.55	16.31	10.3	3.48	4.52	7.03	8.04	3.76
Merged-chr11-94392558-1	chr11	94392458	94392658	+	983.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	418.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	24.23	9.06	10.27	6.44	15.96	12.54	9.63	10.82	17.11	16.07	18.09	11.28
Merged-chr8-95000816-3	chr8	95000709	95000909	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	16410.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	30.69	17.36	10.84	20.51	38.86	26.97	16.94	20.07	34.22	41.67	41.2	29.13
Merged-chr15-67118558-3	chr15	67118463	67118663	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	58319.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	16.15	22.39	31.38	44.24	38.46	46.41	38.53	49.68	23.6	28.62	36.68	7.52
Merged-chr14-51896048-2	chr14	51895953	51896153	+	983.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001039676, exon 4 of 4)	3' UTR (NM_001039676, exon 4 of 4)	2443.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	16.15	18.61	30.8	26.14	12.68	14.74	14.95	20.07	2.16	1.0	1.51	2.19
Merged-chr2-131254144-3	chr2	131254053	131254253	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7855.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	21.0	13.08	17.11	21.72	27.41	26.65	12.95	18.42	23.21	25.11	30.15	23.18
Merged-chr3-52196434-3	chr3	52196297	52196497	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71940.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	14.94	18.36	21.11	24.94	14.73	16.93	20.93	15.7	26.55	22.09	22.11	11.59
Merged-chr9-98297409-3	chr9	98297311	98297511	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	841.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	19.38	16.35	6.28	11.26	18.0	17.87	15.94	21.03	23.41	18.58	17.59	10.02
Merged-chr10-117764766-3	chr10	117764656	117764856	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134010, intron 19 of 27)	RSINE1|SINE|B4	-18398.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	17.36	20.63	23.39	10.86	33.55	30.1	42.85	33.81	29.7	20.59	34.17	15.66
Merged-chr11-81973837-3	chr11	81973731	81973931	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5435.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	31.9	44.02	26.24	34.59	11.45	46.72	18.27	18.67	32.26	34.65	22.61	24.75
Merged-chr16-21400109-3	chr16	21400019	21400219	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22999.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	25.44	16.85	43.93	30.57	24.55	21.01	9.63	19.07	21.83	22.09	21.1	13.78
Merged-chr4-155770202-5	chr4	155770115	155770315	+	983.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_147776, exon 4 of 4)	3' UTR (NM_147776, exon 4 of 4)	4346.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	12.92	21.13	10.27	26.55	13.91	29.79	21.92	13.01	17.51	30.63	23.62	18.48
Merged-chr1-139003748-3	chr1	139003665	139003865	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	26108.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	22.61	11.57	13.69	36.2	18.41	19.76	19.6	22.77	12.19	21.59	15.58	7.21
Merged-chr8-77421302-3	chr8	77421197	77421397	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95759.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	19.79	12.32	15.97	12.47	16.36	15.99	12.62	21.67	15.74	5.52	14.07	11.28
Merged-chr8-69081623-3	chr8	69081535	69081735	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-7101.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	12.92	17.36	21.68	3.22	17.59	35.75	21.59	25.85	26.55	34.65	30.15	13.47
Merged-chr2-126607698-3	chr2	126607581	126607781	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008230, intron 2 of 11)	intron (NM_008230, intron 2 of 11)	10997.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	4.85	26.91	27.38	16.09	14.73	21.32	8.3	15.06	23.01	24.1	22.11	15.98
Merged-chr4-103214749-3	chr4	103214627	103214827	+	983.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356276, exon 1 of 12)	exon (NM_001356276, exon 1 of 12)	449.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	11.71	9.31	8.56	12.07	24.14	15.68	15.61	17.55	14.36	14.06	29.14	8.77
Merged-chr17-6477295-3	chr17	6477193	6477393	+	983.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26299.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	48.86	54.83	58.19	52.69	79.37	73.69	83.37	40.93	13.18	15.57	16.08	11.9
Merged-chr2-116894791-3	chr2	116894684	116894884	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5368.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	19.38	16.1	10.27	39.01	35.18	29.79	29.56	38.36	29.5	20.59	29.65	17.54
Merged-chr8-84974990-3	chr8	84974902	84975102	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011563)	TTS (NM_011563)	3746.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	24.63	14.34	40.5	36.2	27.82	29.48	19.27	25.96	25.37	15.57	31.15	18.17
Merged-chr3-65941233-3	chr3	65941133	65941333	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	17016.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	32.3	24.15	21.68	22.52	24.55	38.88	22.26	28.96	38.94	42.68	46.23	8.14
Merged-chr2-14252247-3	chr2	14252137	14252337	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-8766.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	19.79	10.56	19.97	12.47	19.23	11.29	21.92	16.32	18.29	29.62	21.1	14.72
Merged-chr15-27922376-3	chr15	27922267	27922467	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	103481.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	21.8	16.6	41.64	11.66	19.64	19.13	23.58	27.45	27.54	16.57	39.19	19.42
Merged-chr1-79669773-2	chr1	79669651	79669851	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	2221.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	31.5	23.14	33.09	43.84	11.86	19.13	9.3	17.19	9.83	5.52	9.04	10.34
Merged-chr9-45294507-5	chr9	45294427	45294627	+	983.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24573.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	10.5	8.55	14.26	18.5	16.77	15.68	17.61	15.45	30.49	26.61	18.59	8.46
Merged-chr13-113444670-3	chr13	113444593	113444793	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR40b|LTR|ERVL	58151.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	18.17	15.34	43.93	20.11	13.91	18.81	20.59	26.58	19.47	20.08	29.14	10.02
Merged-chr9-66383545-3	chr9	66383442	66383642	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 3 of 77)	T-rich|Low_complexity|Low_complexity	33092.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	23.82	20.63	18.25	7.24	31.09	18.81	10.96	19.54	25.37	22.59	10.05	10.96
Merged-chr6-52672817-3	chr6	52672750	52672950	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	-32550.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	33.11	30.43	26.81	27.35	24.14	38.88	24.58	22.23	46.62	39.67	33.16	11.28
Merged-chr5-115279734-3	chr5	115279634	115279834	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026504)	promoter-TSS (NM_026504)	32.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	19.38	19.62	13.69	14.88	24.55	15.68	8.64	12.17	18.49	18.08	19.09	13.47
Merged-chr5-25100844-3	chr5	25100754	25100954	+	983.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	-121.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	17.36	10.56	15.97	14.08	29.86	32.93	37.2	28.79	8.06	19.08	24.12	18.8
Merged-chr16-23612184-3	chr16	23612067	23612267	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023386, intron 1 of 1)	(A)n|Simple_repeat|Simple_repeat	2248.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	13.73	11.32	21.68	13.27	12.68	11.92	10.96	15.79	20.06	18.58	21.1	17.54
Merged-chr8-53607280-3	chr8	53607207	53607407	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31758.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	18.98	28.42	19.97	12.07	34.36	28.85	21.26	27.53	33.63	31.13	53.77	26.31
Merged-chr2-48924957-3	chr2	48924876	48925076	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149356, intron 8 of 13)	intron (NR_149356, intron 8 of 13)	24291.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	14.54	22.64	26.24	30.16	18.41	19.76	15.28	30.48	24.98	16.07	21.61	26.94
Merged-chr11-62541755-3	chr11	62541661	62541861	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-2500.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	15.75	13.83	27.38	19.71	21.27	22.26	22.59	30.62	29.9	16.07	24.62	23.18
Merged-chr11-102411928-3	chr11	102411842	102412042	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-4425.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	21.8	36.97	43.93	22.52	27.82	54.56	16.28	15.2	44.45	46.19	39.7	12.53
Merged-chr10-122039772-3	chr10	122039691	122039891	+	983.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	L1M5|LINE|L1	7524.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	19.79	11.57	10.84	18.9	22.09	21.64	30.89	42.03	31.86	16.57	23.11	16.29
Merged-chr4-140674434-2	chr4	140674325	140674525	+	983.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8520.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	16.96	17.61	15.4	13.67	1.23	0.0	3.32	1.65	16.33	18.58	17.08	5.33
Merged-chr6-116083443-3	chr6	116083366	116083566	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-88461.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	16.96	13.33	4.56	16.49	18.0	35.12	8.97	21.98	17.7	20.59	18.59	4.7
Merged-chr13-40944230-3	chr13	40944117	40944317	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	B4|SINE|B4	26583.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	16.15	14.59	26.24	13.67	13.5	25.4	28.23	27.98	16.52	14.56	18.09	13.16
Merged-chr5-125364101-3	chr5	125364000	125364200	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23006.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	10.5	11.57	31.95	29.36	24.14	14.42	32.22	54.45	13.18	15.57	27.13	16.92
Merged-chr8-106007338-1	chr8	106007238	106007438	+	983.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19|LTR|ERVK	-4140.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	3.23	3.52	0.0	0.8	17.18	15.05	12.29	2.89	2.95	2.51	1.51	5.01
Merged-chr7-110860347-1	chr7	110860247	110860447	+	983.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053247, intron 1 of 5)	MIRb|SINE|MIR	2606.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	5.25	7.55	10.27	4.02	14.73	13.48	2.33	16.77	15.34	7.03	6.03	5.95
Merged-chr2-83742372-3	chr2	83742265	83742465	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	Charlie24|DNA|hAT-Charlie	17968.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	20.19	28.17	25.67	21.32	11.45	33.55	16.94	37.4	23.01	34.14	32.16	12.22
Merged-chr11-102697755-3	chr11	102697629	102697829	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025918)	promoter-TSS (NM_025918)	-4.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	18.17	10.31	16.54	9.25	17.59	25.4	9.97	11.1	20.65	19.58	20.1	14.41
Merged-chr17-30027875-3	chr17	30027783	30027983	+	983.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	22844.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	25.04	30.43	15.4	28.96	21.27	16.31	13.62	12.48	30.09	15.06	20.1	8.46
Merged-chr10-70257293-3	chr10	70257204	70257404	+	983.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	12028.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	10.9	17.61	23.39	16.49	25.36	33.55	21.92	19.65	23.8	31.13	20.6	12.53
Merged-chr5-113872413-2	chr5	113872342	113872542	+	983.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	36264.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.0	0.0	1.71	0.0	24.55	18.19	11.63	25.6	13.37	13.05	10.55	9.4
Merged-chr8-94172598-3	chr8	94172436	94172636	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-82.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	19.38	6.79	10.84	6.44	18.41	13.17	11.29	10.6	14.75	19.08	10.05	13.78
Merged-chr3-87330950-3	chr3	87330747	87330947	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27034.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	13.33	17.36	19.97	10.46	12.27	13.48	14.28	14.44	13.77	8.54	14.57	10.65
Merged-chr12-118758242-3	chr12	118758125	118758325	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88104.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	22.21	18.86	17.68	29.36	29.46	27.91	19.6	37.07	38.75	27.11	49.75	11.28
Merged-chr8-10711234-3	chr8	10711135	10711335	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	171219.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	10.9	4.53	21.68	20.51	23.73	36.37	30.56	42.0	19.28	16.07	22.11	13.47
Merged-chr5-101826682-3	chr5	101826597	101826797	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	61567.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	12.52	19.37	28.52	4.42	10.23	20.07	7.97	14.58	13.96	17.57	17.59	19.74
Merged-chr5-99325996-3	chr5	99325901	99326101	+	983.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73074.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	13.73	17.36	29.09	27.75	20.86	14.42	18.93	29.8	21.24	21.59	35.17	9.4
Merged-chr8-86873274-3	chr8	86873171	86873371	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11987.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	21.4	26.91	24.53	20.51	22.91	22.26	17.61	15.93	31.86	27.11	22.11	12.53
Merged-chr3-95987081-3	chr3	95986983	95987183	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045872)	TTS (NR_045872)	1573.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	17.36	9.81	25.67	26.95	15.14	7.84	14.28	22.01	21.24	21.09	20.1	25.69
Merged-chr9-21901639-2	chr9	21901535	21901735	+	983.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16548.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	8.08	12.58	4.56	2.82	14.32	14.74	4.98	16.29	17.11	17.57	23.11	12.84
Merged-chr8-73234184-3	chr8	73234085	73234285	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	119355.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	25.84	22.13	26.81	39.82	22.09	14.11	20.93	31.29	24.19	22.09	33.16	11.9
Merged-chr10-57791507-3	chr10	57791415	57791615	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3029.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.04	16.85	22.82	9.65	24.14	20.7	27.57	23.44	19.28	20.59	21.61	12.22
Merged-chr3-59205717-3	chr3	59205626	59205826	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	23.02	28.17	18.25	24.53	29.05	49.54	10.3	28.74	26.16	32.13	22.11	20.99
Merged-chr2-34780674-3	chr2	34780565	34780765	+	983.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145522, exon 7 of 8)	exon (NM_145522, exon 7 of 8)	8575.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	31.5	28.67	10.84	11.26	23.32	48.6	3.32	1.96	35.4	56.74	6.03	11.28
Merged-chr13-113359070-2	chr13	113358991	113359191	+	983.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	143753.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	1.62	3.52	10.27	4.83	18.41	8.15	9.3	17.8	21.83	22.09	32.66	14.72
Merged-chr9-118607426-4	chr9	118607379	118607579	+	983.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	770.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.29	12.07	24.53	17.29	10.23	26.97	32.88	20.86	23.01	18.08	46.73	31.01
Merged-chr10-57759154-3	chr10	57759056	57759256	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25767.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	19.38	13.08	16.54	17.29	18.41	14.42	22.92	25.85	18.1	20.08	13.57	6.27
Merged-chr11-97029963-3	chr11	97029880	97030080	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146027)	promoter-TSS (NM_146027)	28.0	NM_146027	217140.0	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	16.15	19.37	15.97	16.89	19.64	20.7	13.62	10.26	14.55	14.06	17.59	8.46
Merged-chr8-24547459-3	chr8	24547360	24547560	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 5 of 9)	Lx5c|LINE|L1	28873.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	12.11	17.36	10.84	17.29	13.5	20.07	12.29	20.55	16.33	12.55	20.6	9.71
Merged-chr10-21991540-3	chr10	21991442	21991642	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-681.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	16.15	22.64	18.83	12.47	11.45	18.81	19.6	13.82	12.0	19.58	19.09	16.29
Merged-chr11-78213270-3	chr11	78213176	78213376	+	983.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009297, exon 29 of 37)	exon (NM_009297, exon 29 of 37)	19884.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	33.11	25.4	35.94	27.35	27.41	36.37	8.64	32.33	25.96	22.09	35.17	21.3
Merged-chr3-137955675-3	chr3	137955583	137955783	+	983.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	MIR|SINE|MIR	25866.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	26.65	13.33	21.68	17.29	33.14	39.2	25.24	24.73	34.22	47.2	23.11	13.47
Merged-chr12-52637952-3	chr12	52637851	52638051	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35629.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	21.0	21.88	18.83	18.1	18.41	24.46	10.63	26.58	23.21	38.66	14.07	20.68
Merged-chr1-173961667-3	chr1	173961598	173961798	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011940)	TTS (NM_011940)	-19026.0	NM_001302650	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	51.28	28.42	45.07	49.87	153.0	106.93	73.74	135.14	15.93	12.55	28.64	13.16
Merged-chr1-165583725-3	chr1	165583624	165583824	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50817.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	27.05	19.62	29.66	12.87	20.05	20.7	9.63	23.22	22.23	30.63	29.65	19.11
Merged-chr3-38116223-3	chr3	38116131	38116331	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91888.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	14.54	18.11	22.25	24.53	17.18	21.95	16.94	19.26	24.39	29.62	18.09	10.02
Merged-chr2-77309511-3	chr2	77309425	77309625	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28933.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	27.05	22.64	13.69	15.28	36.0	37.0	15.28	25.79	38.75	42.68	38.69	12.84
Merged-chr8-81756852-1	chr8	81756752	81756952	+	983.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	414290.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.04	2.26	2.28	0.8	0.82	3.76	0.66	2.97	15.93	4.02	14.07	2.82
Merged-chr2-72285950-5	chr2	72285859	72286059	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 1 of 19)	CpG	258.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	12.92	19.12	13.12	18.1	9.41	16.62	14.62	16.04	14.55	17.57	18.59	21.62
Merged-chr4-45966174-3	chr4	45966080	45966280	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	845.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	29.48	33.45	19.97	5.63	23.73	56.44	20.59	15.7	20.06	39.67	22.61	10.65
Merged-chr1-181840175-3	chr1	181840069	181840269	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133815, intron 1 of 13)	intron (NM_133815, intron 1 of 13)	2232.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	22.21	22.64	23.39	21.72	33.96	27.28	24.25	37.77	22.03	12.55	30.15	28.51
Merged-chr16-33583963-3	chr16	33583757	33583957	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	65262.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	6.06	4.53	1.14	1.61	2.45	1.88	7.97	1.68	4.52	5.02	5.53	3.13
Merged-chr7-81196824-3	chr7	81196717	81196917	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16987.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.25	11.07	23.96	16.09	18.0	21.32	21.26	18.39	24.98	19.58	30.15	15.35
Merged-chrX-106148416-3	chrX	106148315	106148515	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	5140.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	12.11	11.32	22.25	24.53	42.14	26.03	44.51	44.64	17.31	25.61	25.12	15.04
Merged-chr9-22824014-1	chr9	22823914	22824114	+	983.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	348299.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.42	1.26	2.85	9.65	2.86	5.64	6.98	14.3	2.16	1.0	6.53	0.63
Merged-chr9-77544861-3	chr9	77544755	77544955	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172528)	promoter-TSS (NM_172528)	-3.0	NM_001146048	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	23.02	21.13	25.67	20.11	26.18	23.83	15.28	27.84	18.69	15.06	34.67	14.72
Merged-chr11-101642065-3	chr11	101642004	101642204	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14155.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	58.95	54.83	71.88	62.74	22.09	35.43	21.26	15.48	15.74	13.05	15.58	10.65
Merged-chr8-10139774-2	chr8	10139667	10139867	+	983.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-14144.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	3.63	3.02	2.28	8.85	18.82	15.05	16.28	19.88	22.42	15.06	33.67	13.16
Merged-chr10-84516630-3	chr10	84516536	84516736	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17252.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	13.33	12.83	27.38	27.75	20.05	8.15	14.95	28.43	19.08	17.07	21.61	17.54
Merged-chr9-59544449-1	chr9	59544349	59544549	+	983.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	4909.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	10.09	10.31	13.12	13.27	11.86	8.47	9.97	13.46	12.39	18.58	8.54	8.14
Merged-chr1-91498805-3	chr1	91498698	91498898	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028718, intron 2 of 14)	intron (NM_028718, intron 2 of 14)	4130.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	15.34	21.63	15.4	17.7	24.96	23.2	16.61	31.85	28.32	11.55	35.68	14.72
Merged-chr1-172348228-3	chr1	172348106	172348306	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	6996.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	12.92	11.82	14.83	20.51	17.59	18.19	23.58	27.11	7.67	10.04	14.57	11.9
Merged-chr19-53421444-3	chr19	53421317	53421517	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30783.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	21.8	18.36	17.68	32.18	20.86	30.1	31.89	20.89	15.74	12.55	18.09	11.28
Merged-chr16-17209192-3	chr16	17209077	17209277	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1042.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	19.79	17.36	6.85	18.9	19.64	25.09	17.61	16.21	20.06	21.59	19.09	16.29
Merged-chr11-29654023-3	chr11	29653924	29654124	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-38874.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	11.71	12.83	18.83	24.94	40.09	51.74	44.84	41.64	48.98	35.15	47.74	22.24
Merged-chr4-59575713-3	chr4	59575605	59575805	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5858.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	27.46	17.36	14.26	16.49	22.09	28.22	21.26	27.62	26.16	26.61	25.63	17.54
Merged-chr18-34888703-3	chr18	34888616	34888816	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27509.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	22.21	17.86	21.68	20.51	25.36	23.52	16.61	14.22	18.88	14.06	24.62	13.16
Merged-chr6-125294194-3	chr6	125294095	125294295	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-8114.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	11.71	14.84	26.81	20.91	27.82	26.34	16.61	22.26	25.96	25.61	33.16	10.65
Merged-chr5-124075080-3	chr5	124075007	124075207	+	982.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20691.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	31.5	22.64	37.65	26.14	35.18	28.22	29.9	34.15	32.45	15.57	33.16	29.45
Merged-chr1-105866893-3	chr1	105866781	105866981	+	982.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86158.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	25.04	25.4	15.97	16.09	38.05	67.73	37.54	26.89	37.17	48.2	47.23	9.71
Merged-chr14-44091723-3	chr14	44091625	44091825	+	982.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-10929.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	48.05	39.24	47.35	66.36	42.55	45.47	58.13	15.14	34.81	44.69	58.29	30.7
Merged-chr9-14884850-2	chr9	14884755	14884955	+	982.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_176807)	TTS (NM_176807)	19096.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	7.67	5.53	8.56	10.46	16.77	11.6	27.57	33.08	19.87	4.52	25.63	21.93
Merged-chr11-87527585-3	chr11	87527481	87527681	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 18 of 30)	RMER1C|Other|Other	-50808.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	21.0	17.36	24.53	13.67	17.18	14.11	10.3	20.44	23.41	15.57	12.06	15.98
Merged-chr13-110684615-3	chr13	110684524	110684724	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218875.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	13.33	11.82	24.53	13.27	16.36	15.99	17.27	21.34	28.13	15.06	32.66	18.17
Merged-chr11-44476629-3	chr11	44476513	44476713	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6065.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	11.71	18.11	12.55	5.23	16.77	33.55	13.95	8.66	39.34	22.59	27.13	5.33
Merged-chr4-9650889-3	chr4	9650786	9650986	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	MTB_Mm|LTR|ERVL-MaLR	-7169.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	11.71	11.82	30.8	16.89	21.27	20.07	11.96	11.3	36.78	37.66	47.23	24.12
Merged-chr8-117519144-3	chr8	117519066	117519266	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	20891.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	16.96	16.6	22.82	14.08	33.55	22.89	22.26	27.73	24.39	24.1	25.12	16.29
Merged-chr14-17903229-3	chr14	17903119	17903319	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-78425.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	10.5	15.09	14.83	28.15	16.36	13.48	32.22	45.45	26.55	22.09	44.72	14.41
Merged-chr17-64600105-3	chr17	64599988	64600188	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-1561.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.67	12.58	25.67	10.86	21.27	4.08	16.61	15.76	18.88	28.12	27.13	18.48
Merged-chr11-82570867-3	chr11	82570757	82570957	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62496.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	12.92	17.36	24.53	20.11	13.91	23.2	18.6	19.96	31.47	14.06	17.08	13.47
Merged-chrX-75155765-3	chrX	75155660	75155860	+	982.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033786, intron 2 of 4)	intron (NM_001033786, intron 2 of 4)	7991.0	NM_001033786	434800.0	Mm.460747	NM_001033786	ENSMUSG00000073094	Smim9	4930428E23Rik	small integral membrane protein 9	protein-coding	13.73	15.59	26.81	18.5	21.68	28.22	22.59	24.36	14.16	15.06	38.19	11.9
Merged-chr17-72916012-1	chr17	72915912	72916112	+	982.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2293.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.44	1.51	5.7	1.61	13.91	15.37	12.95	20.83	1.77	1.0	4.52	1.88
Merged-chr11-100441104-3	chr11	100440995	100441195	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026561)	promoter-TSS (NM_026561)	-6.0	NM_001102650	68106.0	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	18.98	12.32	22.25	18.1	29.86	15.99	18.6	17.94	31.67	23.6	42.21	11.59
Merged-chr10-128211833-3	chr10	128211733	128211933	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-39.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	26.25	20.12	18.83	18.5	24.14	28.54	12.62	19.77	45.63	35.65	55.27	22.56
Merged-chr11-43755601-3	chr11	43755495	43755695	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7622.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	18.98	29.93	6.85	15.28	19.23	22.26	5.65	14.22	29.7	15.57	18.09	11.28
Merged-chr4-138041732-3	chr4	138041601	138041801	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43876.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	25.44	19.62	28.52	36.2	37.64	34.49	29.23	27.03	25.96	14.56	27.13	14.72
Merged-chr9-40727742-2	chr9	40727638	40727838	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	MTC|LTR|ERVL-MaLR	41774.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	14.94	18.86	15.97	17.7	18.0	12.54	21.26	25.79	3.15	0.5	5.02	1.88
Merged-chr7-132339601-3	chr7	132339499	132339699	+	982.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22371.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	13.33	30.94	30.23	17.29	22.5	49.86	33.22	22.82	24.98	32.13	20.6	7.83
Merged-chr14-118910643-4	chr14	118910532	118910732	+	982.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360412, intron 8 of 22)	L1MC3|LINE|L1	12159.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	13.33	25.91	3.99	26.14	22.09	21.32	19.93	24.56	16.33	10.04	24.62	9.4
Merged-chr17-80731273-3	chr17	80731178	80731378	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3253.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	37.15	28.42	44.5	49.87	38.46	15.05	23.25	35.19	33.63	22.59	36.68	17.86
Merged-chr2-132695792-3	chr2	132695577	132695777	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	5079.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.81	2.26	0.57	3.62	9.0	4.08	8.64	4.15	5.11	2.51	6.03	6.58
Merged-chr14-118768166-3	chr14	118768066	118768266	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19705.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	20.59	18.86	17.11	22.93	18.82	21.01	16.61	34.85	18.49	11.05	33.67	14.1
Merged-chr13-81350363-3	chr13	81350243	81350443	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	282801.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	20.19	11.07	25.1	22.12	28.64	21.64	32.55	58.35	36.78	24.1	25.63	16.6
Merged-chr3-138118577-3	chr3	138118481	138118681	+	982.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	13072.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	16.96	15.09	22.82	8.45	27.41	21.01	18.6	24.5	18.69	26.11	16.08	11.9
Merged-chr9-77751331-3	chr9	77751232	77751432	+	982.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3203.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	26.65	24.65	31.95	21.72	26.18	17.25	22.59	30.17	30.29	18.08	16.58	24.75
Merged-chr5-81044091-3	chr5	81043985	81044185	+	982.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	22492.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	12.92	8.8	17.68	19.71	12.27	13.17	11.63	24.67	27.54	29.62	26.63	7.21
Merged-chr14-30944306-5	chr14	30944207	30944407	+	982.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1018.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	8.48	12.32	5.7	6.84	7.36	19.76	20.93	8.47	15.93	15.57	9.55	8.46
Merged-chr19-34240778-3	chr19	34240679	34240879	+	982.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360716)	TTS (NM_001360716)	8154.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	12.92	15.85	23.39	20.91	7.77	19.13	15.28	19.71	43.27	27.11	57.79	26.0
Merged-chr10-68737508-3	chr10	68737418	68737618	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13772.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	10.9	8.8	46.21	55.1	25.36	19.13	62.45	63.42	80.05	40.17	125.62	60.46
Merged-chr13-51839471-3	chr13	51839384	51839584	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7191.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	26.25	13.08	24.53	15.28	24.96	23.83	17.94	29.41	25.77	20.59	39.19	14.1
Merged-chr8-91411859-1	chr8	91411759	91411959	+	982.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011936, intron 3 of 8)	intron (NM_011936, intron 3 of 8)	98334.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.0	0.0	1.14	0.0	13.09	11.6	20.26	23.1	0.39	0.0	0.0	0.0
Merged-chr19-29253027-3	chr19	29252941	29253141	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	1238.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	39.17	20.37	35.94	20.11	21.68	32.61	14.95	17.22	41.11	50.21	22.11	8.46
Merged-chr18-36296653-3	chr18	36296558	36296758	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3443.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	14.13	16.85	13.12	28.15	20.46	17.87	9.97	19.91	21.24	19.08	28.14	13.47
Merged-chr12-78749444-3	chr12	78749300	78749500	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019579, intron 1 of 14)	CpG	453.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	18.57	21.88	13.69	34.99	18.0	33.55	26.57	17.19	31.27	25.61	28.14	20.05
Merged-chr5-102053060-3	chr5	102052965	102053165	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	16856.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	31.09	12.32	27.38	18.9	29.46	21.64	35.21	31.77	28.32	20.59	37.18	26.63
Merged-chr13-105047489-3	chr13	105047371	105047571	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7459.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	14.94	16.35	7.42	9.65	22.91	17.56	6.64	17.33	16.33	20.08	17.59	3.45
Merged-chr6-54934051-3	chr6	54933972	54934172	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 8 of 11)	intron (NM_001171007, intron 8 of 11)	37589.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	21.8	17.86	36.51	15.69	22.91	18.5	16.61	27.28	33.63	30.13	51.76	10.96
Merged-chr1-127975774-2	chr1	127975662	127975862	+	982.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 13 of 20)	intron (NM_001285945, intron 13 of 20)	106989.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	8.08	5.28	9.13	9.25	24.14	12.23	18.93	22.43	19.67	24.6	28.14	21.62
Merged-chr11-28365539-2	chr11	28365433	28365633	+	982.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	218791.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	22.21	32.95	14.26	20.11	82.23	83.1	70.42	107.02	8.65	4.02	2.51	2.82
Merged-chr7-117470475-5	chr7	117470361	117470561	+	982.616699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89482.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	12.11	24.4	24.53	18.5	15.14	15.99	16.61	14.5	14.55	11.55	8.54	11.9
Merged-chr14-17569462-3	chr14	17569374	17569574	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91486.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	23.42	15.09	41.64	39.82	20.05	15.37	27.24	33.76	21.64	13.05	28.14	13.47
Merged-chr6-40595356-3	chr6	40595258	40595458	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9553.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	15.34	14.09	20.54	12.47	14.32	17.56	12.29	14.1	18.88	20.59	20.6	9.08
Merged-chr11-69931162-3	chr11	69931050	69931250	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4749.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	28.27	12.58	22.25	24.53	33.96	21.01	14.62	17.27	23.01	24.1	17.59	16.6
Merged-chr12-28675329-3	chr12	28675259	28675459	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134052, exon 1 of 4)	exon (NM_134052, exon 1 of 4)	152.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	17.77	18.11	11.98	30.97	16.77	26.34	39.86	30.98	43.27	32.64	39.7	34.46
Merged-chr7-101450590-3	chr7	101450499	101450699	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	79.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	16.56	21.88	23.39	19.31	11.86	24.46	17.61	11.92	22.23	16.07	7.54	13.78
Merged-chr2-75978213-3	chr2	75978118	75978318	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081228)	promoter-TSS (NM_001081228)	-39.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	25.44	35.72	56.48	43.44	50.73	36.69	8.97	38.75	76.12	77.32	89.94	46.99
Merged-chr10-59268249-3	chr10	59268150	59268350	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	46328.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	14.94	18.61	17.11	5.63	15.96	19.76	11.96	11.16	28.91	15.06	24.12	12.53
Merged-chr14-9411989-3	chr14	9411877	9412077	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-472118.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	20.19	11.57	24.53	16.89	15.55	12.86	18.6	49.93	18.1	22.09	16.08	10.34
Merged-chr17-8802374-3	chr17	8802271	8802471	+	982.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	CpG	626.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	28.67	35.21	29.66	20.51	30.27	30.1	23.58	25.68	13.18	16.07	22.11	9.71
Merged-chr3-41566156-3	chr3	41566048	41566248	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	CpG	1268.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	19.79	18.11	4.56	18.1	11.45	22.26	12.29	21.84	18.69	15.57	28.64	10.34
Merged-chr4-155833993-3	chr4	155833903	155834103	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025338)	TTS (NM_025338)	2734.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	15.75	29.68	15.4	14.88	13.09	18.19	8.3	13.6	15.34	15.06	18.59	11.9
Merged-chr9-69656239-3	chr9	69656155	69656355	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104685.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	6.46	12.58	18.25	13.67	40.91	30.73	40.52	40.63	20.85	24.1	25.12	16.6
Merged-chr1-156473189-3	chr1	156473053	156473253	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	1175.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	17.36	17.61	9.13	8.85	26.18	24.15	10.96	19.88	23.6	24.6	12.56	16.6
Merged-chr9-45250071-3	chr9	45249968	45250168	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198971)	TTS (NM_001198971)	16639.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	11.31	10.56	25.1	19.71	23.73	19.44	32.22	38.83	27.54	18.08	25.63	14.72
Merged-chr18-65632102-3	chr18	65631976	65632176	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207255, intron 3 of 5)	intron (NM_207255, intron 3 of 5)	-12461.0	NR_105742	100526497.0		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	9.69	13.58	21.11	20.91	16.77	13.48	20.59	22.01	17.31	14.06	27.64	14.72
Merged-chr14-70578469-2	chr14	70578350	70578550	+	982.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360474, exon 1 of 3)	5' UTR (NM_001360474, exon 1 of 3)	351.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	9.69	6.29	11.98	10.46	11.05	11.29	6.64	16.18	14.16	13.56	9.04	10.02
Merged-chr1-151270818-3	chr1	151270717	151270917	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73669.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	22.21	8.8	15.97	18.5	19.23	16.93	18.27	27.28	27.93	31.63	35.68	18.8
Merged-chr11-3148300-2	chr11	3148187	3148387	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	B1F|SINE|Alu	24266.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	20.59	12.83	6.28	12.47	18.82	11.29	20.59	11.3	0.0	0.0	0.0	2.82
Merged-chr4-129877418-3	chr4	129877316	129877516	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28810.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	12.11	21.38	17.11	17.29	18.82	26.34	19.93	13.51	26.16	27.11	20.1	18.48
Merged-chr9-23594832-3	chr9	23594725	23594925	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	371749.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	13.33	14.59	9.7	14.48	21.27	25.71	9.3	17.66	27.54	15.06	21.61	10.02
Merged-chr4-129031624-3	chr4	129031516	129031716	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26655.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	18.57	12.07	21.68	13.27	21.27	23.2	21.92	10.43	24.98	20.59	22.61	12.53
Merged-chr1-173977830-3	chr1	173977731	173977931	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	5013.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	26.65	11.32	20.54	18.5	65.87	51.11	28.57	62.86	13.57	5.52	14.07	6.58
Merged-chr6-92987939-1	chr6	92987839	92988039	+	982.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47357.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.85	1.26	0.0	0.8	12.27	10.03	11.63	11.72	0.2	2.01	1.0	0.0
Merged-chr13-93498968-3	chr13	93498875	93499075	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	833.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	13.73	13.83	11.98	18.9	13.91	16.31	18.6	12.73	23.01	20.59	29.65	17.86
Merged-chr2-91730347-4	chr2	91730235	91730435	+	982.474976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172669, exon 1 of 18)	5' UTR (NM_172669, exon 1 of 18)	197.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	8.88	16.6	11.98	11.26	10.64	19.13	11.29	6.42	26.55	23.1	13.06	12.84
Merged-chr1-152613836-3	chr1	152613710	152613910	+	982.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	11407.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	38.76	18.11	47.35	18.5	38.05	31.67	27.9	37.32	20.65	13.56	13.06	10.02
Merged-chr11-97280471-4	chr11	97280397	97280597	+	982.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008942)	promoter-TSS (NM_008942)	79.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	16.56	19.12	23.39	20.11	11.86	24.46	24.58	13.68	14.95	17.57	16.08	10.34
Merged-chr11-75165516-3	chr11	75165417	75165617	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2635.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	27.05	9.81	15.4	14.48	17.18	24.46	15.61	23.97	37.17	15.06	22.11	18.17
Merged-chr1-159225649-3	chr1	159225540	159225740	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6560.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	17.36	13.33	17.68	7.24	28.23	25.09	22.59	39.93	26.16	41.67	37.18	18.48
Merged-chr2-32960463-3	chr2	32960379	32960579	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199302, intron 1 of 24)	MIRb|SINE|MIR	776.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	16.15	18.11	21.68	10.86	37.23	26.34	23.92	37.15	20.26	28.12	27.64	31.01
Merged-chr8-71665778-3	chr8	71665689	71665889	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 3 of 41)	intron (NM_001029873, intron 3 of 41)	5968.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	18.57	12.32	7.99	12.07	22.91	19.76	12.29	11.16	21.24	26.11	25.63	13.47
Merged-chr4-129020634-3	chr4	129020527	129020727	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27403.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	22.61	14.09	31.95	26.95	15.96	10.98	15.61	21.81	22.42	19.58	33.16	21.3
Merged-chr5-72195620-3	chr5	72195536	72195736	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-7693.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	27.05	16.35	16.54	21.72	16.36	19.44	15.28	21.84	24.0	15.57	19.09	15.66
Merged-chr4-59407953-3	chr4	59407861	59408061	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 5 of 16)	L1MA5|LINE|L1	30672.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	25.44	20.88	25.67	12.47	16.36	44.21	40.86	23.8	29.5	28.62	39.19	11.9
Merged-chr12-36380408-3	chr12	36380295	36380495	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1055.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	18.17	18.36	23.96	21.72	17.59	15.68	9.3	33.79	26.36	11.05	36.68	19.74
Merged-chr1-134785091-3	chr1	134784983	134785183	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	18638.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	58.15	39.49	73.59	49.87	18.41	30.1	21.59	31.79	18.88	32.13	25.63	11.9
Merged-chr9-32541426-3	chr9	32541344	32541544	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008026)	promoter-TSS (NM_008026)	8.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	18.57	24.15	13.69	21.72	21.68	22.89	16.28	16.74	13.57	24.6	27.64	13.47
Merged-chr2-136678879-1	chr2	136678779	136678979	+	982.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-34571.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	4.04	5.53	3.42	8.85	13.09	11.92	10.63	13.54	2.36	0.0	0.0	3.76
Merged-chr4-43005901-3	chr4	43005794	43005994	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4407.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	19.38	34.71	25.1	23.73	29.86	38.88	11.63	17.33	33.83	23.6	32.66	24.75
Merged-chr3-121371630-3	chr3	121371532	121371732	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54909.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	19.79	14.59	11.41	17.7	13.09	14.11	17.61	13.71	29.5	10.54	25.12	19.42
Merged-chr7-99401595-3	chr7	99401487	99401687	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201352, intron 2 of 17)	MIR|SINE|MIR	20069.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	10.9	12.83	21.11	18.1	38.86	20.07	28.57	52.82	33.24	22.09	38.69	17.23
Merged-chr8-110395998-1	chr8	110395898	110396098	+	982.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 12 of 86)	intron (NM_172916, intron 12 of 86)	106358.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	3.23	0.25	0.0	0.8	1.64	0.31	1.66	1.54	6.88	4.52	10.05	10.96
Merged-chr5-130089808-3	chr5	130089737	130089937	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10467.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	20.59	16.85	31.38	13.67	14.73	15.68	12.62	27.87	12.0	10.04	31.15	16.6
Merged-chr10-41571225-3	chr10	41571141	41571341	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	3225.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	24.63	23.9	25.1	44.24	16.36	34.49	25.58	28.99	29.9	37.66	33.16	10.65
Merged-chr13-23702898-3	chr13	23702787	23702987	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-4429.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	13.73	12.83	43.93	36.6	19.23	13.17	22.59	12.08	17.9	16.07	23.62	14.72
Merged-chr2-11705302-3	chr2	11705188	11705388	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133836)	promoter-TSS (NM_133836)	-5.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	8.08	17.1	5.13	11.26	16.36	16.31	5.65	17.52	25.18	17.07	29.14	16.92
Merged-chr9-124121489-3	chr9	124121379	124121579	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009917)	promoter-TSS (NM_009917)	-64.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	21.0	18.36	32.52	35.8	24.14	22.26	15.28	15.34	30.09	17.07	27.13	26.63
Merged-chrX-71053952-3	chrX	71053840	71054040	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	3684.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	17.36	12.83	14.83	6.84	19.64	31.04	4.98	3.64	22.82	28.12	16.58	15.66
Merged-chr10-88383625-3	chr10	88383522	88383722	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	RMER10A|LTR|ERVL	4210.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	11.31	9.81	10.27	12.87	15.96	17.56	13.95	13.15	20.26	16.07	29.65	14.72
Merged-chr11-120630159-3	chr11	120630054	120630254	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	3393.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	11.71	13.83	9.13	14.48	20.05	17.56	15.28	10.99	24.59	21.59	22.61	16.6
Merged-chr15-37305543-3	chr15	37305450	37305650	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026496, intron 7 of 15)	intron (NM_026496, intron 7 of 15)	-72391.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	14.94	24.9	33.09	20.51	24.96	24.15	25.58	35.58	36.98	18.08	44.72	10.65
Merged-chr7-43985828-3	chr7	43985744	43985944	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9783.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	23.82	21.63	27.95	32.98	26.18	35.43	45.84	27.25	19.67	15.06	21.61	17.23
Merged-chr4-88515835-3	chr4	88515752	88515952	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6942.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	21.4	36.72	31.95	14.88	18.41	38.26	20.26	32.5	50.75	37.16	36.18	14.72
Merged-chr2-59616116-3	chr2	59616031	59616231	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4089.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	15.75	12.83	17.11	14.88	21.68	27.59	18.93	31.88	24.39	17.57	25.63	20.36
Merged-chr1-148904284-3	chr1	148904180	148904380	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1018159.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	17.77	21.63	14.26	17.7	19.64	29.79	28.23	34.01	34.03	25.61	32.16	14.41
Merged-chr19-11604821-3	chr19	11604718	11604918	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026835)	promoter-TSS (NM_026835)	-14.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	19.38	14.84	27.95	33.38	31.09	20.07	15.94	20.78	20.65	16.57	16.58	10.02
Merged-chr9-120011719-3	chr9	120011613	120011813	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	11885.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	27.46	35.72	45.07	28.96	41.73	64.91	35.54	28.91	31.86	8.54	24.12	8.46
Merged-chr4-3712655-3	chr4	3712548	3712748	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2316.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	12.52	13.33	7.99	20.51	17.18	17.25	4.98	17.89	13.57	17.07	27.64	17.23
Merged-chr11-82952104-3	chr11	82952044	82952244	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183201)	promoter-TSS (NM_183201)	42.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	31.9	45.28	18.83	10.05	31.5	59.58	22.92	30.36	46.62	35.65	42.71	15.04
Merged-chr1-144299345-3	chr1	144299235	144299435	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67B|LTR|ERV1	-50231.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	13.73	5.28	14.83	18.9	10.64	17.56	12.29	24.73	23.41	5.52	17.59	11.9
Merged-chr2-62643527-3	chr2	62643440	62643640	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2715.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	16.96	13.33	17.68	14.88	22.91	24.46	18.93	22.37	22.62	37.16	38.19	17.86
Merged-chr6-51551707-3	chr6	51551584	51551784	+	982.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	6391.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	18.57	15.34	10.27	18.1	18.0	18.5	20.26	16.51	10.62	22.59	20.1	12.84
Merged-chr14-14684936-3	chr14	14684837	14685037	+	982.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18088.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	18.57	20.63	15.4	35.8	16.77	14.42	9.3	26.52	15.93	14.56	16.08	15.35
Merged-chr8-106577373-3	chr8	106577285	106577485	+	982.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9758.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	12.92	9.31	15.4	18.5	15.14	21.95	18.93	23.41	15.54	16.07	28.14	15.04
Merged-chr12-111944611-2	chr12	111944512	111944712	+	982.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-130.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.4	1.01	0.0	3.22	25.77	17.87	12.62	12.81	15.74	28.62	28.14	12.22
Merged-chr2-71382124-2	chr2	71382021	71382221	+	982.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-7139.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	7.67	4.28	10.27	14.48	15.96	7.53	4.32	10.85	18.1	16.07	20.1	14.72
Merged-chr5-123436330-3	chr5	123436202	123436402	+	982.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	41504.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	18.17	6.79	23.39	12.07	19.23	16.93	6.31	17.69	20.26	11.55	14.57	4.7
Merged-chr7-101357041-3	chr7	101356927	101357127	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	8958.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	12.92	5.79	23.96	14.48	18.0	14.11	9.63	19.96	14.36	17.07	21.61	10.96
Merged-chr8-34816320-3	chr8	34816217	34816417	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8707.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	22.61	19.12	15.4	24.13	20.46	29.16	10.63	26.61	36.39	29.12	33.67	19.74
Merged-chr16-38701988-3	chr16	38701874	38702074	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11061.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	7.67	10.31	13.12	16.49	21.68	21.32	11.96	13.6	17.11	16.57	32.16	5.64
Merged-chr1-59316847-3	chr1	59316725	59316925	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59919.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	35.53	30.43	29.09	20.51	27.41	40.45	8.64	23.19	16.13	18.58	10.05	14.41
Merged-chr13-83066481-3	chr13	83066345	83066545	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-368112.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	10.09	8.55	6.85	13.27	19.23	16.62	19.6	20.47	11.6	9.04	13.06	18.48
Merged-chr13-91224662-3	chr13	91224589	91224789	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-702.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	24.23	23.39	24.53	7.24	36.82	42.65	17.61	22.65	42.29	31.63	32.16	12.84
Merged-chr17-25828920-3	chr17	25828814	25829014	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028101)	promoter-TSS (NM_028101)	-129.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	26.65	15.09	11.98	14.08	19.23	25.09	14.28	12.36	26.75	26.61	16.08	11.9
Merged-chr5-3359282-3	chr5	3359193	3359393	+	982.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15400.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	53.3	19.62	17.11	34.99	23.32	37.63	29.23	30.11	44.84	23.6	54.27	22.56
Merged-chr10-93309795-3	chr10	93309700	93309900	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	1359.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	29.48	22.13	21.11	7.24	22.5	51.74	13.29	20.55	25.37	17.57	16.58	9.71
Merged-chr1-189922379-3	chr1	189922314	189922514	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026796)	promoter-TSS (NM_026796)	-123.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	45.23	33.45	25.67	38.21	50.32	53.31	36.21	66.62	15.93	21.59	41.71	10.02
Merged-chr5-105594745-3	chr5	105594629	105594829	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75258.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	38.76	12.58	44.5	40.62	35.18	27.91	43.18	38.02	24.19	29.12	55.27	14.41
Merged-chr5-66038418-3	chr5	66038329	66038529	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 3 of 6)	intron (NM_139065, intron 3 of 6)	-34144.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	18.17	14.59	19.4	23.33	17.18	33.87	21.92	22.74	30.29	16.57	30.15	18.48
Merged-chr9-62343262-5	chr9	62343157	62343357	+	982.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CpG	1914.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	9.69	16.35	7.99	10.05	27.0	15.68	18.27	19.63	23.8	15.06	24.62	29.13
Merged-chr19-33007793-1	chr19	33007693	33007893	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149319.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	7.27	3.02	11.98	4.83	3.27	6.9	4.32	12.42	4.72	2.51	11.05	6.27
Merged-chr12-73324508-1	chr12	73324408	73324608	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	37660.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	6.06	4.02	4.56	5.23	5.32	11.29	1.33	8.47	8.26	3.01	5.02	1.88
Merged-chr2-112367974-3	chr2	112367866	112368066	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026519)	promoter-TSS (NM_026519)	61.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	25.84	15.09	21.11	28.15	24.55	25.09	21.92	21.22	26.16	12.55	28.14	27.88
Merged-chr4-117136236-3	chr4	117136196	117136396	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2333.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	10.5	15.59	14.83	9.65	67.09	36.37	34.88	53.97	40.91	41.17	35.68	32.58
Merged-chr12-69892659-1	chr12	69892559	69892759	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178628)	promoter-TSS (NM_178628)	-446.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	2.02	12.07	6.28	8.85	6.95	14.74	15.61	7.49	9.83	3.51	3.52	7.83
Merged-chr17-8988344-3	chr17	8988234	8988434	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347544)	promoter-TSS (NM_001347544)	1.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	16.15	12.83	15.4	8.45	28.23	27.59	13.62	22.93	33.24	27.62	36.68	16.6
Merged-chr2-11187388-3	chr2	11187287	11187487	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	15005.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	13.73	18.36	25.1	20.11	11.05	15.37	7.31	14.55	27.14	21.09	27.13	26.0
Merged-chr8-117498423-3	chr8	117498372	117498572	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 1 of 32)	CpG	197.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	8.88	20.63	29.09	21.32	18.0	21.32	21.59	23.61	14.95	23.1	16.08	14.41
Merged-chr5-108449243-2	chr5	108449173	108449373	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172883)	promoter-TSS (NM_172883)	-173.0	NM_172883	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	14.13	13.08	13.12	9.25	24.96	14.42	15.61	21.34	10.03	8.03	12.06	16.6
Merged-chr8-60978713-3	chr8	60978610	60978810	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	4601.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	16.15	16.1	14.26	22.93	24.14	21.95	14.28	23.38	30.09	20.59	23.62	9.4
Merged-chr9-120043335-3	chr9	120043223	120043423	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19725.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	19.38	12.58	14.83	16.09	47.87	37.94	49.49	37.12	20.26	37.16	27.64	9.71
Merged-chr16-25846786-2	chr16	25846678	25846878	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	44862.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	4.85	3.52	7.99	14.88	4.09	3.45	7.64	13.99	21.05	11.05	43.21	9.71
Merged-chr6-92092809-1	chr6	92092709	92092909	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001347342, exon 1 of 15)	5' UTR (NM_001347342, exon 1 of 15)	376.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	8.48	4.78	5.13	4.83	10.64	9.09	5.65	9.03	12.39	9.04	18.59	6.27
Merged-chr9-61330936-3	chr9	61330843	61331043	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37134.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	21.8	17.1	27.95	25.74	13.09	18.19	10.3	23.1	15.34	15.57	30.65	15.98
Merged-chr12-54985787-3	chr12	54985684	54985884	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013815, exon 2 of 27)	5' UTR (NM_013815, exon 2 of 27)	552.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	11.31	16.35	18.83	15.28	18.41	22.26	8.64	9.25	22.23	23.1	9.55	11.59
Merged-chr16-32115389-3	chr16	32115288	32115488	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15586.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	18.57	15.34	21.68	15.69	23.32	32.3	16.61	23.58	13.57	37.16	25.12	15.04
Merged-chr8-82863611-5	chr8	82863498	82863698	+	981.9714359999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177378, exon 1 of 7)	5' UTR (NM_177378, exon 1 of 7)	242.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	14.54	8.55	6.28	22.93	10.23	5.96	20.93	12.84	9.05	12.05	9.55	9.71
Merged-chr2-3726912-3	chr2	3726783	3726983	+	981.9523929999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13425.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	22.61	7.29	21.11	18.5	31.5	14.74	32.22	29.94	24.78	14.56	28.64	14.1
Merged-chr1-37300868-3	chr1	37300773	37300973	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	1035.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	24.63	22.89	28.52	12.47	43.36	68.99	25.24	68.86	40.12	65.27	40.2	25.06
Merged-chr13-23751110-3	chr13	23751013	23751213	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175660)	promoter-TSS (NM_175660)	25.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	28.27	20.37	12.55	20.91	23.73	16.31	11.29	19.65	19.47	39.67	33.16	31.01
Merged-chrX-134606412-3	chrX	134606331	134606531	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001313717, exon 3 of 3)	3' UTR (NM_001313717, exon 3 of 3)	5252.0	NM_001313717	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	16.15	16.1	42.78	20.91	14.32	19.76	14.95	12.84	23.6	25.61	27.13	14.1
Merged-chr17-6106890-3	chr17	6106781	6106981	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	51.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	19.79	16.1	30.23	12.87	17.59	24.46	15.94	13.12	42.68	43.68	61.3	32.27
Merged-chr2-150927289-3	chr2	150927183	150927383	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 5 of 6)	intron (NM_027014, intron 5 of 6)	17689.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	23.42	16.35	18.83	22.93	20.86	22.89	21.26	15.62	18.29	20.08	33.16	10.65
Merged-chr5-91302326-3	chr5	91302209	91302409	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-19233.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	33.11	21.88	35.94	28.15	55.64	44.84	48.83	59.83	14.36	31.63	14.57	10.96
Merged-chr11-70655962-3	chr11	70655875	70656075	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-2177	-1201.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	14.94	22.13	15.97	12.87	16.36	22.58	17.94	10.23	23.6	25.11	21.61	23.18
Merged-chr6-129238037-3	chr6	129237920	129238120	+	981.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	25.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	16.56	18.36	15.97	14.88	31.09	36.06	17.27	22.04	28.91	27.11	37.18	21.62
Merged-chr18-8638170-3	chr18	8638053	8638253	+	981.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-574703.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	27.86	17.36	30.23	38.21	9.0	5.02	16.61	14.83	54.09	42.18	65.83	42.29
Merged-chr4-131916604-3	chr4	131916495	131916695	+	981.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	3434.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	21.8	17.61	19.97	13.67	38.46	40.76	19.93	39.79	24.39	12.55	26.63	19.11
Merged-chr10-85194699-3	chr10	85194608	85194808	+	981.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-9654.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	16.96	13.83	7.99	17.7	23.73	23.52	12.29	12.17	38.75	24.1	28.64	15.98
Merged-chr2-24962436-3	chr2	24962325	24962525	+	981.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355558)	promoter-TSS (NM_001355558)	3.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	21.0	15.85	13.69	7.64	14.32	23.2	7.97	16.09	14.95	18.58	21.61	19.42
Merged-chr8-35068459-2	chr8	35068359	35068559	+	981.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-102769.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.06	13.33	18.83	13.27	10.64	15.05	16.61	22.15	5.7	3.51	11.05	3.45
Merged-chr4-106687057-1	chr4	106686957	106687157	+	981.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001126487, intron 21 of 23)	intron (NM_001126487, intron 21 of 23)	-8113.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	16.15	8.3	18.83	18.5	0.82	0.31	0.33	0.08	6.69	6.53	5.53	5.33
Merged-chr7-19474233-3	chr7	19474116	19474316	+	981.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15722.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	15.75	8.8	5.7	7.64	21.27	19.13	13.29	12.81	24.78	36.15	23.62	9.4
Merged-chr1-171466252-3	chr1	171466172	171466372	+	981.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR73|LTR|ERV1	28711.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	21.4	9.31	19.4	12.87	25.77	30.73	22.92	19.74	22.42	14.56	35.68	22.24
Merged-chr6-8427841-2	chr6	8427667	8427867	+	981.785706	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001302353, exon 5 of 5)	3' UTR (NM_001302353, exon 5 of 5)	81394.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.81	3.02	3.42	4.02	4.5	15.68	19.93	15.17	9.83	8.54	9.04	10.02
Merged-chr6-131293249-3	chr6	131293124	131293324	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025564)	promoter-TSS (NM_025564)	20.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	31.09	26.41	17.11	16.09	17.18	33.24	14.28	23.86	33.44	28.12	17.08	15.98
Merged-chr11-106562963-3	chr11	106562856	106563056	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	49974.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	29.07	23.39	23.96	20.91	30.27	42.33	30.56	38.19	30.29	12.55	24.12	13.16
Merged-chr19-40666010-3	chr19	40665919	40666119	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	6249.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	23.02	22.64	17.11	39.42	28.23	43.27	34.88	51.87	38.75	35.65	52.76	30.7
Merged-chr16-4420023-3	chr16	4419901	4420101	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291910, exon 1 of 12)	5' UTR (NM_001291910, exon 1 of 12)	497.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	17.77	15.85	19.4	10.05	12.68	18.19	12.29	11.41	15.74	17.57	25.12	5.95
Merged-chr18-30088617-3	chr18	30088517	30088717	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184248.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	26.25	45.02	63.89	55.5	73.64	73.38	80.05	92.36	24.98	20.08	19.6	7.21
Merged-chrX-99382468-2	chrX	99382367	99382567	+	981.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61330.0	NR_033544	100038584.0	Mm.368385	NR_033544	ENSMUSG00000073051	Gm14812	-	predicted gene 14812	ncRNA	13.33	21.88	24.53	35.8	16.77	15.99	16.28	27.7	4.52	4.52	7.03	6.89
Merged-chr11-82270366-2	chr11	82270267	82270467	+	981.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90555.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	13.73	11.82	6.85	28.96	15.55	14.42	10.96	10.4	4.33	10.54	11.56	6.58
Merged-chr10-127512999-3	chr10	127512893	127513093	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1946.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	44.42	30.94	15.97	26.95	42.14	37.0	19.27	25.4	40.71	55.73	42.71	31.95
Merged-chr9-32032256-3	chr9	32032148	32032348	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-83888.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	22.21	20.63	21.11	14.88	19.23	15.68	15.94	38.75	26.75	17.57	30.65	10.96
Merged-chr7-49007075-3	chr7	49006983	49007183	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	48010.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	18.98	11.07	21.11	26.55	29.05	12.54	34.55	35.55	26.36	17.07	32.16	22.87
Merged-chr8-125461761-3	chr8	125461678	125461878	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31055.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	13.33	15.85	22.82	19.71	12.68	20.07	12.95	26.58	20.26	20.08	44.72	19.74
Merged-chr6-131278333-3	chr6	131278232	131278432	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	14912.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	22.61	20.12	22.82	27.75	34.77	19.44	35.21	21.76	31.86	32.13	17.59	22.24
Merged-chr1-149961674-3	chr1	149961577	149961777	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-387.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	11.71	16.6	15.4	20.51	22.5	13.48	10.96	8.3	15.34	7.53	24.62	12.84
Merged-chr11-3188080-6	chr11	3187916	3188116	+	981.680542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 2 of 32)	B3|SINE|B2	5447.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	23.02	17.86	22.25	16.49	18.82	15.05	18.27	11.58	27.73	26.61	19.09	22.24
Merged-chr3-104865119-3	chr3	104865026	104865226	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	620.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	15.75	15.09	13.12	20.11	21.27	25.71	38.2	15.45	28.91	26.61	34.67	22.56
Merged-chr11-103262615-3	chr11	103262494	103262694	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	27.86	27.42	30.8	24.53	15.96	25.09	16.61	13.49	25.77	21.09	17.08	11.28
Merged-chr3-65484602-3	chr3	65484495	65484695	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43852.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	14.94	13.33	21.68	19.71	22.5	18.19	20.93	30.08	28.32	23.1	41.71	9.71
Merged-chr1-178641992-1	chr1	178641892	178642092	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	112867.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	4.04	18.11	11.98	17.29	1.23	2.51	1.0	2.3	0.39	1.0	0.0	0.31
Merged-chr12-111930546-2	chr12	111930466	111930666	+	981.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13916.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.81	4.02	5.7	2.41	28.23	19.76	20.59	13.04	19.67	15.57	35.68	15.04
Merged-chr19-34471953-3	chr19	34471830	34472030	+	981.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3205.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	19.38	14.59	10.84	12.87	27.0	34.81	13.62	18.25	31.86	25.11	19.09	12.84
Merged-chr12-108919022-3	chr12	108918936	108919136	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	24764.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	13.73	9.06	17.11	17.7	54.82	90.62	66.1	54.08	33.63	36.15	52.76	25.69
Merged-chr6-51173161-3	chr6	51173040	51173240	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96770.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	11.71	15.34	35.94	17.29	13.91	23.52	17.61	13.07	38.55	42.68	41.2	24.43
Merged-chr1-92648957-3	chr1	92648856	92649056	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153114)	promoter-TSS (NM_153114)	-115.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	12.92	9.06	10.27	16.89	14.32	21.32	9.97	25.68	27.54	20.59	29.14	21.62
Merged-chr2-17932052-3	chr2	17931952	17932152	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64906.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	24.23	28.93	37.08	20.11	18.82	17.25	17.61	20.02	18.69	13.56	14.57	15.66
Merged-chr10-37141785-3	chr10	37141696	37141896	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-2870.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	16.15	13.58	13.12	12.47	43.77	26.03	14.95	41.52	29.31	33.14	37.18	15.98
Merged-chr12-81751327-3	chr12	81751224	81751424	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	ID_B1|SINE|B4	29846.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	12.92	10.06	19.4	24.53	30.68	19.13	8.97	21.56	25.57	11.05	32.16	20.05
Merged-chr5-32139710-5	chr5	32139557	32139757	+	981.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3185.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	14.94	11.32	30.8	8.85	17.59	24.15	12.95	21.31	25.18	22.09	23.11	8.77
Merged-chr18-75901599-2	chr18	75901502	75901702	+	981.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81424.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	8.48	3.02	5.7	4.42	11.86	21.64	16.61	21.64	47.4	54.23	64.82	31.95
Merged-chr10-75060458-3	chr10	75060363	75060563	+	981.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081412)	promoter-TSS (NM_001081412)	-433.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	15.34	12.07	21.11	26.14	18.0	31.98	31.22	37.01	20.65	7.03	17.59	7.21
Merged-chr4-109116683-3	chr4	109116595	109116795	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	1341.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	23.42	12.32	19.97	14.08	35.59	34.18	21.92	24.31	32.65	41.67	42.71	13.16
Merged-chr17-30570342-3	chr17	30570238	30570438	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	MTD|LTR|ERVL-MaLR	5949.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	53.3	43.01	66.17	51.48	19.23	19.13	8.3	16.49	24.0	24.6	25.12	13.78
Merged-chr12-82446740-3	chr12	82446624	82446824	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 21 of 23)	ORR1A4|LTR|ERVL-MaLR	135375.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	25.44	18.86	27.38	32.18	11.45	14.74	12.62	22.46	26.55	13.05	26.63	17.86
Merged-chr15-75903464-3	chr15	75903351	75903551	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029663, exon 3 of 10)	exon (NM_029663, exon 3 of 10)	5893.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	27.05	18.36	7.99	14.48	24.96	17.56	16.28	24.87	15.54	11.05	16.58	14.41
Merged-chr1-74308822-3	chr1	74308735	74308935	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	RMER2|LTR|ERV1	-4499.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	12.92	23.39	28.52	21.32	32.32	35.12	11.96	17.1	27.93	18.08	23.11	12.22
Merged-chr16-36669829-4	chr16	36669745	36669945	+	981.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3768.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	12.11	7.55	9.7	9.65	13.09	26.03	21.59	23.05	11.6	16.57	23.62	9.08
Merged-chr11-77785903-3	chr11	77785783	77785983	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8648.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	18.98	9.56	23.96	24.53	38.05	24.46	20.93	32.05	23.41	18.58	28.14	11.59
Merged-chr12-4198918-3	chr12	4198813	4199013	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 8 of 21)	intron (NM_001159537, intron 8 of 21)	35052.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	21.8	11.32	24.53	25.34	73.64	50.8	57.47	82.79	30.88	27.62	43.72	17.23
Merged-chr17-84850634-3	chr17	84850518	84850718	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59832.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	20.19	20.37	13.12	18.5	11.86	21.32	16.61	17.44	18.88	16.07	19.09	13.16
Merged-chr13-105055618-3	chr13	105055500	105055700	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-670.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	48.05	29.68	32.52	61.94	49.5	41.71	26.91	50.78	14.75	11.55	34.67	20.05
Merged-chr3-97991623-3	chr3	97991512	97991712	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21926.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	11.31	11.57	15.4	13.27	18.82	34.49	29.56	37.12	25.77	22.59	25.12	13.78
Merged-chr6-137575441-1	chr6	137575341	137575541	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-4432.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	12.92	8.55	12.55	6.84	1.23	2.2	2.99	2.92	1.97	3.51	3.52	3.76
Merged-chr3-51882108-3	chr3	51882012	51882212	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	220933.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	16.15	10.06	19.97	25.74	32.32	16.93	26.91	24.84	20.26	19.58	37.18	15.35
Merged-chr4-42879829-2	chr4	42879732	42879932	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-5598.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	14.13	11.32	7.42	2.01	16.77	24.46	4.98	1.85	9.44	3.51	2.51	0.31
Merged-chrY-90808845-1	chrY	90808745	90808945	+	981.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	23403.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	10.9	6.54	0.57	2.01	6.55	3.45	2.99	1.32	27.34	27.62	18.59	18.48
Merged-chr10-125387766-3	chr10	125387663	125387863	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58800.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	23.82	10.82	18.83	25.34	15.14	15.05	22.59	25.77	15.54	16.57	23.62	17.86
Merged-chr11-3183447-2	chr11	3183327	3183527	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	B1_Mus2|SINE|Alu	10036.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	11.71	14.59	16.54	7.64	13.09	10.66	8.64	9.08	0.0	0.0	0.5	0.0
Merged-chr10-8007445-3	chr10	8007349	8007549	+	981.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51326.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	30.28	34.71	25.1	19.71	31.5	51.74	23.58	28.32	35.6	38.66	34.17	10.96
Merged-chr10-63177448-3	chr10	63177330	63177530	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	26522.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	12.92	10.56	18.83	16.89	27.0	25.4	20.93	32.66	42.48	31.13	53.26	25.69
Merged-chr3-116126727-3	chr3	116126628	116126828	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	2960.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	10.5	14.84	18.25	23.33	15.14	9.41	16.61	36.34	30.88	7.03	25.63	20.36
Merged-chr17-10841033-3	chr17	10840929	10841129	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	670.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	10.9	22.89	21.68	11.66	18.82	24.77	19.6	25.21	31.67	28.62	63.82	20.68
Merged-chr9-107713580-3	chr9	107713468	107713668	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3093.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	18.17	23.9	18.83	14.48	22.5	31.04	14.28	10.07	24.19	28.12	36.68	12.22
Merged-chr19-46609843-3	chr19	46609754	46609954	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	10748.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	20.59	12.83	16.54	19.71	18.82	14.74	10.3	22.82	20.46	22.09	22.11	21.3
Merged-chr1-107402306-3	chr1	107402190	107402390	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20399.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	14.94	10.31	16.54	18.9	26.18	16.62	13.29	37.51	31.08	35.15	40.7	17.54
Merged-chr3-84259759-3	chr3	84259614	84259814	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271727)	promoter-TSS (NM_001271727)	65.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	11.71	16.6	11.98	14.48	15.14	21.32	16.28	14.55	15.93	17.07	9.04	10.34
Merged-chr11-69041783-3	chr11	69041693	69041893	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3844.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	29.07	24.65	18.83	20.91	22.09	31.04	9.63	15.2	36.19	26.11	29.14	24.43
Merged-chr12-32292166-3	chr12	32292063	32292263	+	981.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83514.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	13.73	25.91	29.09	25.74	20.86	32.61	12.62	22.15	20.06	29.12	23.62	9.4
Merged-chr11-63052986-3	chr11	63052884	63053084	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8675.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	11.71	16.1	22.82	12.07	15.14	31.36	21.59	17.3	90.48	51.72	82.41	41.66
Merged-chr7-25813818-3	chr7	25813693	25813893	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028775, intron 2 of 8)	intron (NM_028775, intron 2 of 8)	2737.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	12.92	15.34	17.68	24.53	17.59	21.64	8.97	10.35	21.24	18.08	15.07	21.3
Merged-chr12-99264549-3	chr12	99264441	99264641	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101733.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	16.15	28.17	41.07	34.99	27.41	23.2	39.53	48.22	20.65	16.07	40.2	13.16
Merged-chr12-111166449-3	chr12	111166358	111166558	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	88.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	52.09	48.54	37.08	18.5	56.05	99.72	27.9	39.98	71.99	75.82	93.96	30.07
Merged-chr17-35439533-2	chr17	35439441	35439641	+	981.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001201460, exon 2 of 7)	exon (NM_001201460, exon 2 of 7)	374.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	15.75	16.6	8.56	6.84	15.55	15.37	10.96	2.07	22.42	17.57	14.07	13.78
Merged-chr9-80081159-3	chr9	80081054	80081254	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311110, intron 1 of 23)	ORR1E|LTR|ERVL-MaLR	14251.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	12.92	23.64	18.25	37.0	42.55	25.71	20.93	40.15	31.27	25.61	56.78	31.01
Merged-chr3-96251944-3	chr3	96251852	96252052	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5252.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	16.96	14.59	19.97	14.48	23.32	18.19	13.95	26.55	16.13	18.58	26.63	9.71
Merged-chr11-68440249-3	chr11	68440133	68440333	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	8108.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	22.61	15.34	25.67	16.09	19.64	37.32	13.29	17.52	17.9	23.1	21.61	10.34
Merged-chr11-83631283-3	chr11	83631174	83631374	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18104.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	11.31	6.29	20.54	16.89	27.82	22.26	33.55	43.85	21.05	12.55	33.16	19.74
Merged-chr13-85288494-3	chr13	85288396	85288596	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145452, exon 1 of 25)	exon (NM_145452, exon 1 of 25)	990.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	9.29	13.83	15.4	15.28	21.68	16.62	35.87	17.5	17.31	26.11	15.58	11.9
Merged-chr13-3525921-3	chr13	3525784	3525984	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12191.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	14.13	16.6	22.82	26.95	15.55	15.37	12.95	21.39	13.18	6.53	21.61	11.28
Merged-chr3-41743983-3	chr3	41743895	41744095	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1377.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	12.52	19.87	8.56	14.08	17.18	13.48	6.98	14.97	35.4	15.57	35.68	18.17
Merged-chr15-98510661-3	chr15	98510555	98510755	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9179.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	24.23	18.11	15.4	16.89	19.64	17.56	9.63	19.57	34.81	39.16	19.6	16.6
Merged-chr12-75687665-3	chr12	75687593	75687793	+	981.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-18156.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	12.92	18.86	11.98	17.7	20.86	13.48	13.29	16.91	21.24	23.6	21.1	7.21
Merged-chr7-28584105-3	chr7	28583986	28584186	+	981.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027470, intron 1 of 9)	L2b|LINE|L2	14098.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	15.34	11.82	15.97	15.69	16.36	14.74	15.94	20.69	15.34	15.06	24.62	14.72
Merged-chr6-92183963-3	chr6	92183850	92184050	+	981.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025578)	promoter-TSS (NM_025578)	73.0	NM_025578	64658.0	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	17.77	14.34	11.98	17.7	23.32	27.28	24.91	24.39	19.87	19.58	24.12	12.53
Merged-chr7-126643408-2	chr7	126643315	126643515	+	981.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5894.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	10.9	5.28	2.28	4.83	19.23	21.95	15.28	2.72	22.03	20.59	18.09	13.16
Merged-chrX-155702190-2	chrX	155702092	155702292	+	981.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger20a|DNA|TcMar-Tigger	-78865.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	13.33	12.58	24.53	19.31	21.27	17.56	24.91	28.01	4.92	0.0	0.5	0.63
Merged-chr8-115632378-3	chr8	115632273	115632473	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	15.75	16.1	13.12	14.08	42.14	18.81	13.29	14.41	28.52	29.12	29.14	5.64
Merged-chr8-82843893-3	chr8	82843786	82843986	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19470.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	19.38	28.67	26.81	33.78	36.82	13.48	25.58	27.06	15.93	21.09	28.14	15.35
Merged-chr12-72761785-3	chr12	72761670	72761870	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008910, intron 1 of 5)	CpG	559.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	23.42	17.1	20.54	15.28	18.0	11.29	13.62	13.49	24.59	24.1	27.64	15.66
Merged-chr11-75268042-3	chr11	75267934	75268134	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177708)	TTS (NM_177708)	74041.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	12.92	10.82	22.25	15.28	28.64	31.67	16.94	24.7	20.65	18.08	37.18	20.68
Merged-chr8-85083664-3	chr8	85083570	85083770	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010764, intron 1 of 23)	intron (NM_010764, intron 1 of 23)	401.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	26.25	18.61	14.26	22.12	10.23	22.58	10.96	15.98	24.98	24.1	20.1	20.36
Merged-chr4-115057009-3	chr4	115056920	115057120	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287388)	promoter-TSS (NM_001287388)	594.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	12.52	11.07	18.25	10.05	19.64	11.92	9.3	24.9	18.69	22.09	24.62	26.0
Merged-chr8-106563770-3	chr8	106563681	106563881	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23362.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	16.96	13.33	31.38	19.71	33.14	17.25	17.61	24.53	29.5	19.08	28.14	11.59
Merged-chr9-49427585-2	chr9	49427482	49427682	+	981.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	-561.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	18.57	12.83	13.69	23.33	35.18	26.34	32.88	49.57	0.98	1.0	0.0	0.94
Merged-chr10-120815449-3	chr10	120815331	120815531	+	981.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-42198.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	20.59	17.1	13.69	31.37	15.55	33.24	27.24	32.69	13.57	18.08	23.11	14.1
Merged-chr12-3391087-3	chr12	3390987	3391187	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	25955.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	14.13	11.07	6.85	6.03	18.0	26.03	7.97	18.93	29.31	24.6	42.21	19.42
Merged-chr6-97442821-3	chr6	97442718	97442918	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	B1_Mur1|SINE|Alu	16468.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	18.98	9.56	17.11	15.69	26.18	20.7	14.62	26.07	23.6	29.12	37.69	19.11
Merged-chr8-14859669-3	chr8	14859649	14859849	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28787.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	16.56	9.81	15.4	6.03	6.95	13.48	11.63	21.28	10.62	6.53	11.05	10.02
Merged-chr11-89023623-1	chr11	89023523	89023723	+	981.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24220.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.06	4.78	3.42	1.21	3.27	3.45	2.66	6.34	14.95	21.09	15.07	16.29
Merged-chr7-88225968-3	chr7	88225859	88226059	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52126.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	19.79	27.67	30.8	19.71	24.55	27.91	18.27	32.8	21.44	13.05	29.65	10.34
Merged-chr4-9133850-3	chr4	9133747	9133947	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135446.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	24.23	18.11	22.25	18.1	17.18	42.96	16.94	14.22	19.28	28.62	36.18	5.95
Merged-chr5-32194475-3	chr5	32194366	32194566	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-38242.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	16.15	9.56	17.11	15.28	33.14	32.3	26.57	20.27	38.55	38.66	32.16	29.76
Merged-chr10-80223336-3	chr10	80223231	80223431	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	RLTR13C2|LTR|ERVK	-3267.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	21.4	11.82	18.25	16.89	22.91	32.93	15.94	19.23	30.49	41.17	24.12	18.48
Merged-chr1-151025339-3	chr1	151025238	151025438	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	-31903.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	20.59	17.61	22.82	15.69	16.77	30.73	13.29	22.88	30.68	26.11	35.17	13.16
Merged-chr13-9763210-3	chr13	9763114	9763314	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	596.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	11.71	13.83	26.24	18.1	19.23	18.81	11.96	21.53	36.98	26.11	32.66	26.0
Merged-chr7-73606962-3	chr7	73606861	73607061	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48566.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	14.13	23.9	14.26	16.49	32.73	33.55	20.59	25.01	20.85	40.17	42.21	19.11
Merged-chr1-91027115-3	chr1	91027031	91027231	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	-26313.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	19.38	17.1	18.25	12.47	17.18	38.88	8.97	19.37	34.22	24.6	35.68	27.57
Merged-chr12-69331365-3	chr12	69331253	69331453	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025441, intron 17 of 32)	B3|SINE|B2	25823.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	14.54	14.34	25.67	19.71	31.09	31.98	30.56	40.01	28.72	28.62	34.17	23.18
Merged-chr2-165934012-2	chr2	165933894	165934094	+	981.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49156.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	12.52	9.06	19.4	12.07	20.05	18.81	17.94	19.23	1.18	0.0	1.51	2.51
Merged-chr11-44382308-3	chr11	44382200	44382400	+	981.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17763.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	31.5	24.9	37.08	19.71	25.36	34.18	29.9	21.95	31.27	33.14	17.08	9.71
Merged-chr4-129063191-4	chr4	129063051	129063251	+	981.0625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	PB1D7|SINE|Alu	4880.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	13.33	12.58	9.13	14.08	25.36	15.05	8.64	11.44	10.82	14.06	11.05	7.52
Merged-chr16-91043995-3	chr16	91043867	91044067	+	981.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152264, intron 1 of 17)	CpG	412.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	14.94	15.09	15.4	18.1	24.96	28.85	22.59	16.23	12.19	8.54	26.13	22.87
Merged-chr2-120153719-3	chr2	120153614	120153814	+	981.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	861.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	23.02	18.36	37.08	45.05	42.55	25.4	23.25	39.56	25.96	13.56	33.67	19.74
Merged-chr9-13662159-6	chr9	13662016	13662216	+	981.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173776)	promoter-TSS (NM_173776)	-344.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	10.09	9.31	16.54	14.48	14.32	19.13	9.63	13.99	11.01	15.57	6.03	13.47
Merged-chr10-17691883-1	chr10	17691783	17691983	+	981.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-31345.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.44	1.76	2.28	10.46	10.64	3.76	1.33	7.85	3.15	5.52	4.52	2.19
Merged-chr4-40847459-3	chr4	40847390	40847590	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	2648.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	14.54	11.82	13.12	8.85	10.23	19.13	18.6	16.68	17.7	17.07	30.65	13.78
Merged-chr11-31877762-1	chr11	31877662	31877862	+	981.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026252, intron 1 of 9)	intron (NM_026252, intron 1 of 9)	6822.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.85	9.31	3.42	6.44	1.64	8.78	1.33	0.56	14.75	10.54	9.04	2.82
Merged-chr2-93471403-3	chr2	93471318	93471518	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8468.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	22.61	12.58	17.68	13.27	21.68	17.25	8.3	17.58	22.42	27.62	18.09	13.16
Merged-chr3-104968152-3	chr3	104968062	104968262	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6453.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	34.32	14.09	23.39	9.25	13.91	23.2	11.63	17.94	23.8	18.58	22.61	8.77
Merged-chr10-59324014-1	chr10	59323914	59324114	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	718.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	12.11	19.62	13.12	12.07	8.18	13.48	9.97	11.33	9.83	13.56	15.07	10.65
Merged-chr7-24395237-1	chr7	24395137	24395337	+	981.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4391.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.42	5.28	0.57	2.01	1.64	1.25	0.33	0.67	22.23	16.57	21.1	11.59
Merged-chr3-8964158-3	chr3	8964040	8964240	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	6.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	14.94	10.31	5.7	5.63	16.77	12.23	9.97	24.34	6.29	10.04	19.6	15.66
Merged-chr2-49733619-1	chr2	49733519	49733719	+	981.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-54067.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.81	3.52	6.28	10.86	5.32	3.14	7.31	7.12	1.57	4.02	4.52	4.07
Merged-chr17-27825129-3	chr17	27825009	27825209	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4567.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	27.05	17.61	35.37	16.09	27.41	30.73	10.96	23.64	27.93	28.62	43.72	16.29
Merged-chr13-59001393-1	chr13	59001293	59001493	+	981.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	193696.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	2.83	0.0	3.42	4.42	0.0	2.82	4.32	4.49	13.57	6.03	32.16	12.84
Merged-chr17-34278773-1	chr17	34278673	34278873	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	8998.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	11.71	18.11	5.13	3.62	1.64	0.63	0.0	0.73	6.1	1.0	2.01	5.33
Merged-chr7-4996133-3	chr7	4996052	4996252	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026741)	promoter-TSS (NM_026741)	-51.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	21.0	15.34	14.26	15.28	25.36	28.85	11.63	20.61	17.9	32.64	27.64	19.74
Merged-chr4-141213991-3	chr4	141213915	141214115	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081174)	promoter-TSS (NM_001081174)	59.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	16.56	16.35	17.11	14.08	20.46	18.5	17.27	13.91	31.47	28.62	16.58	8.77
Merged-chr2-181291162-3	chr2	181291022	181291222	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3156.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	13.33	11.82	14.26	10.05	14.73	21.64	19.27	14.22	25.37	22.09	21.1	17.54
Merged-chr13-23697619-3	chr13	23697531	23697731	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178208)	TTS (NM_178208)	827.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	16.15	10.82	21.11	16.09	17.18	12.86	12.29	17.16	12.0	10.54	19.09	11.59
Merged-chr7-126704769-3	chr7	126704681	126704881	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009898)	promoter-TSS (NM_009898)	35.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	15.75	10.56	13.69	9.25	17.18	17.25	9.63	12.62	19.67	19.08	19.09	14.72
Merged-chr4-149790028-3	chr4	149789921	149790121	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15754.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	16.15	11.07	26.24	12.87	42.14	21.32	19.27	26.89	28.72	28.12	41.2	20.05
Merged-chr8-22411342-3	chr8	22411256	22411456	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020560)	promoter-TSS (NM_020560)	16.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	10.9	19.87	15.4	33.78	24.96	29.16	15.94	29.78	37.96	34.14	44.22	22.24
Merged-chr3-27439348-2	chr3	27439257	27439457	+	980.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68006.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	2.42	2.52	7.42	11.66	20.86	11.6	24.58	28.04	19.47	16.57	22.61	10.34
Merged-chr14-21832205-3	chr14	21832072	21832272	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011695, intron 2 of 9)	intron (NM_011695, intron 2 of 9)	611.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	9.29	14.09	20.54	15.69	9.82	12.54	22.26	14.13	22.03	18.08	21.61	10.02
Merged-chr15-41861179-3	chr15	41861092	41861292	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_130885)	TTS (NM_130885)	8528.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	12.52	14.09	23.96	22.12	19.23	22.26	19.93	32.1	18.29	11.55	38.19	27.57
Merged-chr1-176827672-3	chr1	176827563	176827763	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	8470.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	13.33	14.84	18.83	14.08	40.5	45.47	28.57	37.18	34.03	33.14	33.16	14.41
Merged-chr19-55312020-3	chr19	55311916	55312116	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025883, intron 3 of 10)	intron (NM_025883, intron 3 of 10)	4020.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	14.13	11.32	28.52	22.93	14.32	29.16	17.61	25.15	29.31	18.08	37.69	29.76
Merged-chr1-87638394-3	chr1	87638296	87638496	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	18084.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	19.38	17.61	21.68	43.84	18.41	22.26	20.26	28.57	12.59	22.59	22.61	19.11
Merged-chr17-26537770-3	chr17	26537656	26537856	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23756.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	17.77	18.11	11.98	8.45	20.05	29.79	13.95	14.52	16.72	17.57	19.6	10.02
Merged-chr7-92985084-5	chr7	92984968	92985168	+	980.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94811.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	8.08	10.06	8.56	10.86	5.73	7.21	12.62	14.78	10.82	10.04	12.56	6.27
Merged-chr18-30583630-2	chr18	30583532	30583732	+	980.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	310767.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	1.62	0.75	4.56	0.0	4.5	14.11	8.97	13.09	15.54	17.07	21.1	14.41
Merged-chr3-60537265-3	chr3	60537156	60537356	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	36077.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	19.38	19.62	18.25	34.19	30.68	21.32	10.3	32.5	35.99	27.62	36.18	17.86
Merged-chr18-50058718-3	chr18	50058611	50058811	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-5049.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	20.19	16.1	13.69	21.32	17.18	12.86	21.26	17.83	32.65	35.65	66.83	23.81
Merged-chr5-107754908-3	chr5	107754796	107754996	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-29091.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	27.46	27.17	20.54	6.03	30.27	58.64	38.2	19.88	31.27	31.13	21.1	15.98
Merged-chr1-195032400-3	chr1	195032281	195032481	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015566, intron 7 of 7)	intron (NR_015566, intron 7 of 7)	-4659.0	NR_029809	723963.0		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	24.23	21.38	27.38	9.25	26.18	47.04	20.93	17.92	28.72	33.64	27.13	9.71
Merged-chr6-87590738-3	chr6	87590635	87590835	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021381)	promoter-TSS (NM_021381)	8.0	NM_001355655	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	11.71	12.32	9.7	8.85	10.64	15.37	12.95	12.17	14.36	14.56	16.08	10.65
Merged-chr7-45920711-3	chr7	45920635	45920835	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001146346, exon 1 of 5)	5' UTR (NM_001146346, exon 1 of 5)	114.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	11.31	12.58	14.26	5.63	14.73	29.48	18.27	8.8	23.01	25.61	26.13	16.6
Merged-chr2-31172227-3	chr2	31172132	31172332	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178760, intron 5 of 17)	intron (NM_178760, intron 5 of 17)	19916.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	5.25	6.29	19.97	17.7	23.73	21.95	8.97	38.19	15.93	20.08	39.19	28.51
Merged-chr1-65180008-3	chr1	65179926	65180126	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-884.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	18.17	21.63	6.28	12.47	21.27	16.93	7.31	18.31	18.29	32.64	37.18	20.05
Merged-chr13-20494217-3	chr13	20494119	20494319	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21229.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	20.19	14.34	21.11	13.67	22.5	13.8	13.29	24.9	26.75	19.08	37.18	19.74
Merged-chr12-69507573-3	chr12	69507471	69507671	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-32021.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	16.56	12.58	22.82	19.71	15.14	17.56	21.92	18.5	45.83	30.63	47.74	33.52
Merged-chrX-155218462-3	chrX	155218374	155218574	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2025.0	NM_001291865	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	12.11	14.84	16.54	8.85	29.46	28.85	16.94	23.1	37.57	34.65	24.12	17.54
Merged-chr12-54823072-3	chr12	54822958	54823158	+	980.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27396.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	18.57	6.79	18.83	35.8	27.41	16.62	20.93	68.24	19.08	17.07	26.63	20.05
Merged-chr3-83855857-2	chr3	83855758	83855958	+	980.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-14250.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	12.11	5.28	10.84	6.84	20.46	16.93	9.97	16.04	19.47	18.58	21.1	10.34
Merged-chr4-47319707-3	chr4	47319544	47319744	+	980.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33578.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	17.36	11.07	7.42	16.49	22.5	21.32	8.3	15.11	16.33	14.56	30.15	8.77
Merged-chr2-145832801-5	chr2	145832692	145832892	+	980.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	46676.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	27.46	14.84	18.83	36.2	43.77	30.42	19.93	22.65	39.53	41.67	56.28	31.95
Merged-chr3-116185429-3	chr3	116185338	116185538	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-55750.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	12.11	14.34	21.11	12.87	22.09	31.36	14.95	27.11	27.14	27.11	41.71	22.56
Merged-chr4-129335969-3	chr4	129335848	129336048	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-78.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	18.98	16.6	15.97	22.52	9.82	22.89	17.61	13.09	38.94	30.63	22.11	18.17
Merged-chr13-95844469-3	chr13	95844377	95844577	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	47445.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	17.36	17.36	26.24	27.35	19.23	21.95	9.63	22.15	61.96	54.23	56.28	30.07
Merged-chr13-93187997-3	chr13	93187899	93188099	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	4418.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	47.65	46.28	33.66	18.5	27.41	47.04	26.91	28.09	60.19	54.23	35.17	29.45
Merged-chr1-170742587-3	chr1	170742495	170742695	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 15 of 15)	Lx8|LINE|L1	98063.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	18.57	27.17	11.98	13.27	18.82	10.98	14.28	10.57	20.46	15.06	20.6	6.27
Merged-chr17-5849719-3	chr17	5849612	5849812	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8332.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	52.09	76.21	34.8	15.69	53.18	85.29	28.57	26.78	53.11	58.75	29.65	21.93
Merged-chr9-57259939-3	chr9	57259823	57260023	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2676.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	17.77	15.34	29.66	13.27	30.68	36.37	8.97	20.66	21.64	34.65	32.66	15.04
Merged-chr14-54771184-3	chr14	54771066	54771266	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	10720.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	18.57	14.34	11.98	14.88	15.55	15.68	1.66	14.41	28.13	40.67	31.15	13.16
Merged-chr13-100642645-3	chr13	100642547	100642747	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283011, intron 4 of 17)	B2_Mm2|SINE|B2	8414.0	NM_001044371	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	15.34	15.09	14.83	16.89	17.18	18.81	3.32	15.53	13.57	15.06	26.13	13.78
Merged-chr16-93780831-3	chr16	93780717	93780917	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357118, intron 23 of 35)	intron (NM_001357118, intron 23 of 35)	14084.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	15.75	11.07	13.69	20.91	22.5	31.04	15.28	24.14	26.75	26.61	31.15	20.36
Merged-chr13-34794014-3	chr13	34793933	34794133	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54391.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	16.56	17.36	21.11	20.51	26.18	15.68	8.97	17.83	27.54	16.57	26.63	16.29
Merged-chr3-14881573-3	chr3	14881475	14881675	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4694.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	23.82	21.13	9.13	7.64	13.09	34.49	17.94	9.84	45.43	30.13	31.66	9.71
Merged-chr17-8165779-3	chr17	8165650	8165850	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201230, intron 1 of 11)	CpG	232.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	21.0	11.32	13.69	13.27	20.46	20.7	21.26	12.98	18.88	14.06	18.09	15.35
Merged-chr10-8760729-3	chr10	8760627	8760827	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125343.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	17.77	4.78	12.55	20.51	23.32	17.56	16.61	20.19	24.78	29.62	28.14	9.71
Merged-chr5-100632940-3	chr5	100632845	100633045	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41311.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	27.46	13.33	22.82	13.27	49.91	48.29	22.92	32.8	40.91	47.7	33.67	22.24
Merged-chr4-139242627-3	chr4	139242541	139242741	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	48530.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	16.15	8.55	22.25	39.42	34.77	33.24	27.24	52.01	15.14	14.56	31.66	22.56
Merged-chrX-167196540-3	chrX	167196434	167196634	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	12684.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	15.75	12.83	5.7	19.31	12.27	29.79	34.55	31.04	23.6	22.09	36.18	14.72
Merged-chr10-96328655-3	chr10	96328554	96328754	+	980.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102447.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	20.19	15.85	27.38	25.74	33.55	24.77	28.23	30.42	32.65	17.57	42.71	20.05
Merged-chr13-23700969-3	chr13	23700876	23701076	+	980.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2518.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	14.54	11.82	17.11	14.88	19.23	20.07	13.62	25.91	24.19	40.67	70.35	22.87
Merged-chr11-113751131-6	chr11	113751015	113751215	+	980.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	45.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	9.29	9.81	14.26	9.25	12.27	15.37	10.3	8.07	20.26	30.13	14.07	23.49
Merged-chr1-191115772-4	chr1	191115681	191115881	+	980.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	17367.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	21.8	10.82	17.68	12.47	35.59	29.48	12.29	22.01	17.51	19.58	12.06	12.22
Merged-chr2-165858962-3	chr2	165858832	165859032	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-759.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	10.09	15.85	18.25	14.48	8.59	16.31	13.62	13.57	16.13	8.54	13.57	15.66
Merged-chr5-31201209-3	chr5	31201110	31201310	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177901, intron 1 of 2)	intron (NM_001177901, intron 1 of 2)	832.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	29.48	17.36	32.52	15.28	20.05	23.2	15.94	18.31	39.73	10.04	22.61	12.53
Merged-chr9-104063012-3	chr9	104062885	104063085	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	136.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	17.36	18.36	14.83	17.7	11.45	18.5	16.94	12.0	21.83	24.6	17.08	15.98
Merged-chr7-122087739-3	chr7	122087639	122087839	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14109.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	16.15	15.59	23.39	28.15	17.18	11.92	22.26	37.49	19.87	5.52	29.14	17.23
Merged-chr13-9419382-3	chr13	9419286	9419486	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142861.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	35.13	12.32	18.83	18.5	21.68	24.77	23.25	40.65	23.41	16.07	14.57	12.84
Merged-chr17-10702998-3	chr17	10702894	10703094	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	137197.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	12.52	12.07	21.11	16.49	66.27	41.71	60.46	67.37	25.96	23.6	22.11	12.53
Merged-chr9-21316964-3	chr9	21316869	21317069	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-3750.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	25.44	18.11	14.83	12.87	64.23	90.0	36.54	45.79	48.98	51.72	31.15	13.47
Merged-chr7-66355717-3	chr7	66355629	66355829	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	25995.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	21.0	17.86	24.53	3.62	20.46	34.49	10.96	4.54	30.68	34.65	16.58	5.95
Merged-chr18-60268788-1	chr18	60268688	60268888	+	980.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001034859, exon 2 of 2)	3' UTR (NM_001034859, exon 2 of 2)	4479.0	NM_001034859	225594.0	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	2.42	4.78	15.4	7.24	15.14	13.17	13.62	12.45	7.47	5.52	2.01	4.7
Merged-chr16-17562070-3	chr16	17561977	17562177	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029053)	promoter-TSS (NM_029053)	192.0	NM_001159561	18440.0	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	41.19	65.4	52.48	30.16	72.82	102.54	50.82	43.74	18.29	12.55	18.59	16.29
Merged-chr9-61681206-3	chr9	61681112	61681312	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	233298.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	14.13	9.31	33.09	23.33	53.18	38.57	26.57	38.27	44.06	27.11	46.73	32.27
Merged-chr14-76217300-3	chr14	76217191	76217391	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34171.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	32.71	32.95	38.79	16.89	41.73	52.05	22.59	18.81	58.02	58.75	50.75	18.48
Merged-chr1-97660810-3	chr1	97660722	97660922	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	854.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	10.9	19.37	21.11	27.35	22.09	19.44	17.94	23.36	23.41	17.07	17.08	10.65
Merged-chr5-72851955-3	chr5	72851862	72852062	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	L2|LINE|L2	16486.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	23.42	14.59	27.95	12.87	45.0	40.14	23.58	29.02	40.71	30.63	29.65	15.04
Merged-chr10-44070830-3	chr10	44070722	44070922	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65976.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	11.31	18.61	31.95	32.58	20.86	26.34	10.63	20.41	44.84	34.65	42.21	23.18
Merged-chr16-95898094-3	chr16	95897987	95898187	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040485, exon 2 of 4)	non-coding (NR_040485, exon 2 of 4)	626.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	24.63	35.47	23.96	14.48	38.46	64.6	27.9	25.26	58.02	80.84	75.87	18.8
Merged-chr9-41136711-3	chr9	41136599	41136799	+	980.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	21363.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	37.55	44.52	34.23	20.91	64.23	77.14	48.16	42.34	27.93	43.68	36.68	11.28
Merged-chr10-121367293-3	chr10	121367246	121367446	+	980.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	2256.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	19.38	10.31	8.56	19.71	15.14	16.62	17.27	26.13	17.9	23.1	23.62	10.34
Merged-chr7-29039800-3	chr7	29039689	29039889	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 87 of 105)	MER91B|DNA|hAT-Tip100	43905.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	20.19	14.59	29.09	18.9	31.09	30.42	8.97	22.23	42.68	38.16	35.68	20.68
Merged-chr17-29671222-3	chr17	29671101	29671301	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028791, intron 2 of 23)	MTD-int|LTR|ERVL-MaLR	10606.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	31.09	22.64	24.53	7.24	12.27	48.92	15.94	3.93	23.21	24.6	19.09	4.07
Merged-chr6-113698047-3	chr6	113697864	113698064	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033463, exon 2 of 8)	exon (NM_001033463, exon 2 of 8)	914.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	10.09	8.55	5.7	11.66	15.96	10.66	7.97	10.07	15.54	19.08	11.05	18.8
Merged-chr16-91462840-3	chr16	91462741	91462941	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-2263.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	16.15	15.59	21.11	15.69	23.73	21.95	9.3	15.56	24.59	16.07	20.6	6.89
Merged-chr1-135536540-3	chr1	135536455	135536655	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	48800.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	22.61	23.39	19.97	13.27	15.96	35.75	18.6	11.94	17.11	21.59	17.08	5.95
Merged-chr19-46148521-3	chr19	46148379	46148579	+	980.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008852)	promoter-TSS (NM_008852)	-154.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	26.65	14.59	9.7	18.1	29.05	38.88	25.91	24.9	17.9	24.1	24.12	10.96
Merged-chr19-36375423-5	chr19	36375340	36375540	+	980.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3627.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	25.04	34.71	9.7	6.84	8.18	27.28	13.29	7.07	14.16	30.63	16.08	1.57
Merged-chr18-61632513-3	chr18	61632421	61632621	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7132.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	18.57	22.13	16.54	24.13	22.5	18.5	21.26	17.02	28.52	23.6	16.58	16.92
Merged-chr2-154264645-3	chr2	154264519	154264719	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175167, intron 6 of 14)	intron (NM_175167, intron 6 of 14)	6740.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	20.59	13.08	15.97	41.43	33.14	30.73	28.23	18.87	34.62	30.13	50.25	27.88
Merged-chr19-11533583-3	chr19	11533479	11533679	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3270.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	23.02	18.86	23.39	25.74	17.18	33.24	7.97	20.8	23.41	17.07	23.62	16.6
Merged-chr8-117224808-3	chr8	117224743	117224943	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32176.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	17.36	27.92	13.69	12.87	25.36	16.62	16.61	19.21	22.82	23.1	36.18	14.41
Merged-chrX-142966686-3	chrX	142966592	142966792	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019496)	promoter-TSS (NM_019496)	36.0	NM_019496	56068.0	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	31.09	19.62	12.55	24.53	18.82	36.69	34.55	34.79	23.6	22.59	31.15	20.99
Merged-chr5-112972469-3	chr5	112972382	112972582	+	980.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 3 of 20)	intron (NM_001285806, intron 3 of 20)	43056.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	18.98	8.55	23.39	30.16	27.0	14.74	15.94	35.69	20.85	23.1	20.1	13.78
Merged-chr5-90853338-2	chr5	90853238	90853438	+	980.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37907.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	18.57	9.56	17.68	20.11	14.32	19.76	25.58	38.64	5.11	0.0	5.53	4.7
Merged-chr4-35165413-3	chr4	35165313	35165513	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7929.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	11.71	9.56	4.56	5.23	77.32	68.05	70.42	78.67	72.38	57.24	79.89	40.41
Merged-chr6-97867376-3	chr6	97867273	97867473	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	60315.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	27.46	31.94	34.23	18.5	24.55	46.72	14.95	10.04	38.35	39.67	40.7	12.53
Merged-chr2-166980338-3	chr2	166980262	166980462	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	URR1B|DNA|hAT-Charlie	-15645.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	14.54	9.81	23.39	14.08	27.82	14.42	14.62	23.1	24.0	21.09	15.58	11.9
Merged-chr14-50819910-1	chr14	50819810	50820010	+	980.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009632, intron 12 of 15)	intron (NM_009632, intron 12 of 15)	11994.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.4	2.26	0.0	3.22	2.86	0.0	0.66	1.18	24.98	15.57	18.09	22.87
Merged-chr17-65771189-3	chr17	65771091	65771291	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	1561.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	15.34	16.85	7.99	22.93	17.18	19.13	14.95	13.74	17.7	7.53	14.57	16.6
Merged-chr2-22744881-3	chr2	22744779	22744979	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29448.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	35.13	56.34	43.35	32.18	15.55	21.01	11.29	11.8	13.57	20.08	14.57	24.12
Merged-chr4-8916468-1	chr4	8916368	8916568	+	980.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165144.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.65	1.76	6.28	1.61	4.09	4.08	1.66	2.19	14.75	15.57	19.6	6.27
Merged-chr11-54100945-3	chr11	54100872	54101072	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	48.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	22.21	9.31	17.11	20.51	17.18	29.16	25.58	20.05	19.47	21.59	22.61	11.28
Merged-chrX-166238936-3	chrX	166238828	166239028	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023122)	promoter-TSS (NM_023122)	-15.0	NM_001177961	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	18.98	12.58	18.25	14.88	16.77	13.8	24.58	19.15	11.41	15.57	26.63	14.1
Merged-chr9-108120856-3	chr9	108120766	108120966	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007567, intron 3 of 11)	intron (NM_007567, intron 3 of 11)	-12852.0	NR_126078	76873.0	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	25.04	29.93	26.81	15.69	23.32	28.54	15.61	14.24	56.65	55.73	52.26	45.11
Merged-chr17-17878677-3	chr17	17878570	17878770	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013521, intron 1 of 1)	L1_Mus4|LINE|L1	5269.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	23.82	14.84	15.4	12.47	30.68	29.79	17.61	15.28	22.62	28.12	45.22	12.22
Merged-chr11-96034854-3	chr11	96034756	96034956	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-29.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	29.07	25.66	17.68	17.7	29.05	36.37	9.63	16.49	38.35	43.68	30.15	24.75
Merged-chr4-155068166-3	chr4	155068070	155068270	+	980.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042407, intron 2 of 5)	intron (NM_001042407, intron 2 of 5)	1140.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	22.21	15.09	22.82	16.09	30.27	20.7	7.97	18.03	30.49	32.64	32.66	19.42
Merged-chr1-16618020-6	chr1	16617925	16618125	+	980.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271016, intron 1 of 6)	intron (NM_001271016, intron 1 of 6)	1313.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	8.48	10.82	9.7	13.27	15.14	5.96	15.94	10.46	13.18	16.07	12.56	15.04
Merged-chr3-89295697-4	chr3	89295622	89295822	+	980.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14771.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	17.36	17.86	15.97	10.05	7.77	9.41	13.62	13.37	10.62	14.56	12.56	13.47
Merged-chr1-161594826-3	chr1	161594742	161594942	+	980.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	100185.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	22.21	19.62	28.52	41.83	16.77	20.7	34.21	22.35	14.75	25.11	22.11	7.52
Merged-chrX-167210907-3	chrX	167210821	167211021	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1703.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	8.08	10.31	24.53	23.73	4.91	10.98	20.26	21.48	13.37	13.05	18.59	12.22
Merged-chr18-9503234-3	chr18	9503143	9503343	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53089.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	11.31	15.09	12.55	10.05	21.27	21.32	10.63	21.64	25.57	9.04	15.58	13.47
Merged-chr6-7753359-3	chr6	7753243	7753443	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60161.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	15.75	15.09	49.06	33.78	25.77	18.5	22.26	33.14	23.21	19.58	15.58	9.71
Merged-chr18-67933976-3	chr18	67933860	67934060	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	CpG	787.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	17.77	16.85	13.12	21.32	14.32	18.81	23.58	21.62	12.59	17.57	16.08	10.65
Merged-chr10-68280096-3	chr10	68279957	68280157	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1331.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	17.36	26.91	13.12	18.9	15.55	34.18	16.28	21.42	21.83	18.08	30.15	16.29
Merged-chr7-127448713-3	chr7	127448597	127448797	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175163, exon 1 of 3)	exon (NM_175163, exon 1 of 3)	461.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	13.73	15.34	13.69	17.29	19.23	21.01	9.63	12.28	17.9	24.1	16.08	18.48
Merged-chr2-59462267-3	chr2	59462166	59462366	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-22387.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	12.11	13.83	28.52	24.94	31.09	39.51	21.92	34.79	23.8	17.57	30.65	20.05
Merged-chr5-34501770-3	chr5	34501676	34501876	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12203.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	14.54	22.89	25.1	6.84	11.86	29.48	11.63	10.82	17.31	33.14	31.15	14.41
Merged-chr11-50239351-3	chr11	50239265	50239465	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-833.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	17.36	14.34	10.84	20.51	29.05	28.85	25.91	35.72	20.46	14.06	21.61	13.47
Merged-chr8-41006927-3	chr8	41006833	41007033	+	980.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10535.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	29.48	35.47	18.83	42.23	50.73	62.09	22.26	44.86	32.06	31.63	50.75	26.31
Merged-chr13-119801127-3	chr13	119801041	119801241	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10019.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	12.92	18.61	13.69	15.28	18.0	23.83	18.6	27.59	33.83	29.12	37.18	17.86
Merged-chr12-36364518-3	chr12	36364423	36364623	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16927.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	2.83	8.55	17.11	22.93	16.77	13.48	13.62	20.24	25.57	9.54	35.17	15.35
Merged-chr1-121509311-3	chr1	121509212	121509412	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010483)	TTS (NM_010483)	19153.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	22.61	31.19	39.36	28.56	13.91	32.93	10.96	8.92	31.67	20.59	30.15	21.62
Merged-chr5-139826874-3	chr5	139826768	139826968	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356963)	promoter-TSS (NM_001356963)	26.0	NM_001356963	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	16.15	11.57	26.81	21.32	22.09	14.42	5.65	19.71	18.88	20.59	19.6	19.11
Merged-chr11-120042617-3	chr11	120042494	120042694	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-813.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	16.15	9.56	17.68	12.87	20.05	27.59	8.64	18.25	26.16	16.57	17.59	21.62
Merged-chr18-17732179-1	chr18	17732079	17732279	+	980.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-151189.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	5.65	0.5	2.28	4.83	12.27	14.74	13.29	22.43	5.11	8.03	15.07	4.39
Merged-chr1-131672566-3	chr1	131672477	131672677	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 9 of 9)	intron (NM_007799, intron 9 of 9)	-16118.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	30.28	21.88	33.66	22.52	20.86	25.09	9.3	21.45	38.16	32.64	35.68	22.56
Merged-chr10-13560427-3	chr10	13560319	13560519	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025748, intron 3 of 5)	intron (NM_025748, intron 3 of 5)	-7277.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	12.11	18.11	42.21	34.59	24.14	23.52	20.59	39.62	34.42	20.08	44.72	26.31
Merged-chr3-103859105-3	chr3	103859003	103859203	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104070)	promoter-TSS (NR_104070)	-692.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	25.84	35.97	15.4	34.99	20.86	24.77	16.94	24.25	31.47	37.66	18.59	20.68
Merged-chr14-21049554-3	chr14	21049455	21049655	+	980.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018829, intron 1 of 8)	intron (NM_018829, intron 1 of 8)	2887.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	20.59	16.1	22.82	11.66	20.46	24.77	10.63	12.98	24.39	14.56	21.61	12.84
Merged-chr2-5772672-3	chr2	5772565	5772765	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57903.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	22.21	12.83	32.52	20.11	8.59	11.6	14.95	16.43	27.93	16.57	40.7	22.87
Merged-chr12-85341304-3	chr12	85341154	85341354	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-1892.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	23.82	12.58	10.84	17.7	22.91	23.2	12.95	16.74	24.0	26.61	12.56	19.42
Merged-chr3-86998778-3	chr3	86998678	86998878	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007639, exon 2 of 6)	exon (NM_007639, exon 2 of 6)	562.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	16.56	15.09	14.83	14.48	29.46	32.61	24.91	19.51	25.18	28.12	23.62	20.36
Merged-chr5-30651632-3	chr5	30651530	30651730	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	3691.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	39.57	40.5	48.49	14.48	45.82	46.41	61.78	67.85	53.7	50.71	43.72	40.1
Merged-chr14-51063924-3	chr14	51063836	51064036	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Leu-CTY|tRNA|tRNA	-6694.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	33.11	20.12	22.25	25.74	27.82	33.24	8.97	15.56	39.34	18.58	24.62	14.1
Merged-chrX-167330594-3	chrX	167330564	167330764	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290756)	promoter-TSS (NM_001290756)	-93.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	8.88	9.06	6.28	3.62	14.73	18.81	4.65	9.59	26.16	31.63	16.08	15.35
Merged-chr17-21517089-3	chr17	21517112	21517312	+	980.095215	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18327.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	3.63	5.53	2.28	10.46	6.55	3.45	10.63	4.35	6.88	8.03	8.04	4.39
Merged-chr5-125376087-3	chr5	125375980	125376180	+	980.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13937.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	21.0	23.64	51.34	26.55	7.77	11.29	14.95	14.33	21.64	6.53	16.08	5.95
Merged-chr18-67768507-3	chr18	67768341	67768541	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6435.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	6.86	7.29	3.42	9.25	6.14	11.29	11.29	6.62	6.29	12.55	12.06	6.27
Merged-chr5-115488312-3	chr5	115488207	115488407	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3823.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	26.65	20.88	17.11	22.52	23.32	31.04	12.95	30.14	27.14	14.56	25.12	29.13
Merged-chr16-84584045-3	chr16	84583929	84584129	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95760.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	26.25	27.92	24.53	37.4	22.09	10.03	8.64	14.86	61.56	42.68	53.77	30.07
Merged-chr10-77531136-3	chr10	77531029	77531229	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	781.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	23.42	21.38	14.83	10.05	37.23	41.71	35.21	33.95	23.8	34.14	22.11	21.3
Merged-chr7-4063140-3	chr7	4062952	4063152	+	980.0476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178611, intron 1 of 6)	intron (NM_178611, intron 1 of 6)	152.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.46	15.59	5.7	11.26	9.41	17.25	17.27	8.66	21.83	18.58	29.65	33.52
Merged-chr15-86185113-4	chr15	86185038	86185238	+	980.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	-590.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	10.5	11.57	14.83	12.87	11.86	10.03	17.94	14.22	15.54	15.57	12.56	14.41
Merged-chr8-88293781-1	chr8	88293681	88293881	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-423.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.04	5.03	7.42	4.02	14.32	9.41	10.3	18.03	8.85	6.03	4.02	4.7
Merged-chr16-23984920-4	chr16	23984867	23985067	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3684.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	14.13	24.15	11.98	11.66	19.23	17.25	12.95	19.65	17.51	18.08	19.6	14.41
Merged-chr14-60830296-3	chr14	60830197	60830397	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027436, intron 12 of 18)	intron (NM_027436, intron 12 of 18)	45731.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	15.34	16.1	11.98	23.73	10.64	12.54	9.3	15.2	29.7	17.07	48.24	20.05
Merged-chr2-51089514-3	chr2	51089470	51089670	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59541.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	45.23	20.63	37.65	22.52	9.41	33.87	26.91	33.39	30.29	29.12	29.65	19.11
Merged-chr13-83074755-3	chr13	83074676	83074876	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-376443.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	24.23	14.09	33.09	27.35	29.46	13.17	23.25	26.89	14.36	9.04	18.59	10.34
Merged-chr5-137747645-1	chr5	137747545	137747745	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1676.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	1.62	2.52	3.42	7.24	0.41	1.57	6.64	4.29	3.15	4.52	4.02	4.7
Merged-chr9-70679549-2	chr9	70679431	70679631	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007399, intron 1 of 15)	CpG	549.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	14.13	7.29	3.99	13.67	17.59	10.03	7.31	10.88	11.6	21.59	15.07	14.1
Merged-chr11-117168834-3	chr11	117168742	117168942	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30819.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	16.96	11.82	21.11	19.31	34.77	26.34	13.95	27.56	29.31	14.56	25.63	18.17
Merged-chr10-28540790-1	chr10	28540690	28540890	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-127570.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	1.21	0.5	3.42	5.63	14.73	4.08	2.99	9.14	0.39	0.0	1.0	2.19
Merged-chr10-62219062-2	chr10	62218949	62219149	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	12169.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	16.96	13.08	11.41	5.63	15.96	6.9	3.32	14.33	10.62	6.53	5.53	3.45
Merged-chr19-40832556-1	chr19	40832456	40832656	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172839, intron 2 of 5)	MIR|SINE|MIR	1277.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	4.85	5.53	10.84	11.66	4.5	3.45	9.97	9.11	9.24	6.53	6.03	6.89
Merged-chr4-9084141-1	chr4	9084041	9084241	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185152.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	6.86	2.77	3.42	5.63	2.45	4.7	7.31	8.3	5.9	3.51	11.05	2.19
Merged-chr19-47004261-3	chr19	47004144	47004344	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10454.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	23.42	27.42	13.12	28.56	21.68	21.01	16.61	24.45	26.95	26.11	19.09	17.54
Merged-chr7-74724847-2	chr7	74724744	74724944	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-170064.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	14.94	22.13	36.51	23.73	18.82	25.09	19.27	21.67	0.0	1.0	1.0	2.19
Merged-chr4-127250130-3	chr4	127250040	127250240	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6356.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	8.08	17.1	16.54	23.73	20.05	27.91	13.95	15.95	51.34	30.63	42.21	15.66
Merged-chr13-59669022-3	chr13	59668930	59669130	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6754.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	36.34	21.38	35.94	24.13	27.0	24.77	21.59	32.86	24.78	13.56	37.18	19.11
Merged-chr1-171102861-4	chr1	171102761	171102961	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18800.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	21.8	19.12	16.54	19.31	27.41	27.28	26.57	18.87	15.14	11.05	19.6	7.52
Merged-chrX-155278621-2	chrX	155278518	155278718	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019736, intron 5 of 14)	intron (NM_019736, intron 5 of 14)	16175.0	NM_019736	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	8.08	5.03	19.97	8.04	18.82	17.56	27.57	19.57	8.26	15.57	22.61	6.58
Merged-chr2-129558762-3	chr2	129558666	129558866	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-22164.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	20.59	17.86	13.69	19.31	30.27	74.63	19.27	26.22	51.53	52.72	51.25	32.89
Merged-chr5-25498387-5	chr5	25498314	25498514	+	979.974976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081383, exon 1 of 59)	exon (NM_001081383, exon 1 of 59)	369.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	11.71	19.12	9.13	9.65	11.86	12.86	11.96	11.02	18.69	21.59	16.58	11.28
Merged-chr5-110978570-3	chr5	110978475	110978675	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-25569.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	14.94	17.61	29.09	29.36	20.46	22.89	12.29	24.17	24.78	16.57	30.15	15.66
Merged-chr11-85131769-3	chr11	85131667	85131867	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	8188.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	14.94	16.1	22.82	19.31	20.05	21.32	12.62	18.36	19.28	23.6	21.61	11.59
Merged-chr11-19963898-3	chr11	19963810	19964010	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	39468.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	35.13	22.64	22.25	20.51	31.5	32.61	16.28	18.48	33.24	40.67	33.16	10.02
Merged-chr16-56729278-3	chr16	56729167	56729367	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172825, intron 15 of 15)	MTB|LTR|ERVL-MaLR	-11817.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	14.94	10.56	28.52	21.32	13.5	12.23	24.91	25.82	29.11	17.07	39.7	26.31
Merged-chr13-20211948-3	chr13	20211852	20212052	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	121445.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	16.56	11.82	14.83	16.09	18.0	22.89	9.3	19.68	51.34	36.65	61.81	25.69
Merged-chr11-84880711-3	chr11	84880623	84880823	+	979.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077636)	promoter-TSS (NM_001077636)	-438.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	18.17	17.1	10.27	9.25	19.64	28.54	10.63	13.79	18.88	21.59	11.05	17.86
Merged-chr5-33219341-2	chr5	33219229	33219429	+	979.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1091.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.81	1.51	1.14	2.82	16.77	22.89	19.27	22.6	16.72	14.56	30.15	12.22
Merged-chr13-112361818-3	chr13	112361714	112361914	+	979.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 8 of 11)	L1MD3|LINE|L1	73296.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	31.5	31.19	19.97	37.4	32.73	22.26	19.93	27.06	26.55	16.07	40.7	9.71
Merged-chr2-148408244-3	chr2	148408113	148408313	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009378)	promoter-TSS (NM_009378)	-25.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	12.92	10.31	30.23	24.13	24.96	13.8	36.87	46.35	12.98	18.58	29.14	19.42
Merged-chr5-125409023-3	chr5	125408919	125409119	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-19002.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	22.21	17.36	12.55	20.11	16.77	38.57	12.29	10.46	15.93	12.05	19.6	12.53
Merged-chr14-64753581-3	chr14	64753481	64753681	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	101050.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	22.21	20.88	21.68	20.91	11.45	52.05	29.56	17.78	16.72	31.13	23.11	13.47
Merged-chr1-144241099-3	chr1	144241011	144241211	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	7993.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	21.8	31.69	16.54	26.55	25.36	41.39	16.94	10.29	15.93	20.08	15.07	11.9
Merged-chr3-81983322-3	chr3	81983213	81983413	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7585.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	10.09	14.84	18.83	6.03	27.82	23.2	22.26	37.82	36.39	35.15	35.68	28.51
Merged-chrX-7293158-3	chrX	7293058	7293258	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	26200.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	23.02	19.87	36.51	20.51	24.96	22.58	21.92	31.09	21.44	21.09	16.58	11.9
Merged-chr5-139371369-3	chr5	139371276	139371476	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1631.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	25.44	13.83	34.23	23.33	19.64	17.56	28.57	38.72	22.03	19.08	41.2	25.37
Merged-chr15-67767807-3	chr15	67767707	67767907	+	979.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	491049.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	11.71	19.12	14.83	15.69	15.96	22.26	18.93	24.0	25.77	19.58	34.67	21.93
Merged-chr10-59381827-2	chr10	59381729	59381929	+	979.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-21856.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	19.79	11.32	24.53	10.86	13.09	15.99	11.29	13.09	0.39	0.5	0.0	0.0
Merged-chr18-80483744-3	chr18	80483647	80483847	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14080.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	24.23	19.12	23.39	24.53	20.46	28.54	10.3	30.62	65.89	30.13	47.74	23.49
Merged-chr19-4213579-3	chr19	4213489	4213689	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310038)	promoter-TSS (NM_001310038)	-649.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	35.13	21.13	34.23	15.28	33.96	47.04	22.26	33.79	52.52	47.2	39.19	26.0
Merged-chr17-25797152-3	chr17	25797051	25797251	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133719)	promoter-TSS (NM_133719)	-106.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	23.02	16.35	23.96	14.08	38.46	33.87	20.26	26.16	35.99	33.14	27.13	21.62
Merged-chr8-120537286-3	chr8	120537188	120537388	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-121.0	NM_001145896	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	16.96	16.6	21.11	10.46	8.18	10.66	13.29	29.69	26.75	20.59	10.55	13.78
Merged-chr5-5749380-3	chr5	5749277	5749477	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-60.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	28.27	13.08	15.4	20.91	28.23	33.24	28.9	38.92	19.47	18.58	25.63	10.96
Merged-chr9-42837726-3	chr9	42837632	42837832	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	106639.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	16.96	24.9	34.8	25.74	29.46	15.37	33.22	32.55	27.73	19.58	38.19	10.96
Merged-chr4-103215331-3	chr4	103215222	103215422	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356276)	promoter-TSS (NM_001356276)	-146.0	NM_177732	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	16.15	22.89	15.97	19.31	24.55	19.13	40.19	23.72	18.88	21.09	20.6	11.28
Merged-chr7-83858136-3	chr7	83858023	83858223	+	979.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3A|LINE|L1	26218.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	12.92	10.82	38.22	21.72	23.73	31.36	28.23	45.67	32.85	22.59	43.72	26.0
Merged-chr13-62785767-4	chr13	62785695	62785895	+	979.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	13.0	NM_001256065	380850.0	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	22.21	17.36	6.85	28.15	20.86	18.81	18.93	8.97	18.49	28.62	39.19	21.93
Merged-chr15-97415690-3	chr15	97415580	97415780	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168393.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	18.17	10.56	21.68	30.57	35.59	19.44	20.93	41.86	19.67	12.55	37.18	20.05
Merged-chr1-89575663-3	chr1	89575579	89575779	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108213.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	31.5	16.85	33.09	24.94	29.46	21.01	15.61	20.02	20.26	15.57	8.54	20.36
Merged-chr8-40580487-3	chr8	40580372	40580572	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 7 of 13)	intron (NM_001040699, intron 7 of 13)	54320.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	13.33	9.81	22.25	30.97	25.77	18.81	28.23	37.15	21.44	16.07	28.14	10.02
Merged-chr2-28698796-3	chr2	28698670	28698870	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027283, intron 1 of 4)	intron (NM_027283, intron 1 of 4)	881.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	16.96	15.59	18.83	10.46	25.77	14.42	11.63	20.94	21.64	17.57	25.12	14.1
Merged-chr13-44538402-3	chr13	44538307	44538507	+	979.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98680.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	23.42	18.61	21.68	15.69	18.82	49.54	20.93	17.5	34.81	36.15	37.18	9.08
Merged-chr9-94537448-4	chr9	94537354	94537554	+	979.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	627.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	33.52	30.43	19.4	43.04	31.5	27.91	39.2	30.79	38.35	26.61	33.67	31.01
Merged-chr18-3005645-5	chr18	3005506	3005706	+	979.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117806.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.23	5.79	3.42	4.02	16.77	11.92	26.57	17.02	12.78	16.07	22.61	36.34
Merged-chr3-142621347-3	chr3	142621257	142621457	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010260, intron 1 of 10)	Lx8|LINE|L1	694.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	35.13	44.52	47.92	23.33	37.23	68.36	28.9	32.75	30.68	45.19	34.17	11.9
Merged-chr14-22847832-3	chr14	22847719	22847919	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	246752.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	12.11	14.84	21.68	24.53	34.36	48.92	58.79	62.72	14.55	19.08	43.72	17.23
Merged-chr8-79160073-3	chr8	79159970	79160170	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	RCHARR1|DNA|hAT-Charlie	88513.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	11.71	13.83	21.68	25.34	19.23	27.28	16.94	31.32	26.16	23.6	28.14	17.23
Merged-chrX-7679895-3	chrX	7679793	7679993	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037581, intron 2 of 5)	intron (NR_037581, intron 2 of 5)	1196.0	NM_018832	54634.0	Mm.67912	NM_018832	ENSMUSG00000031147	Magix	Pdzx|Sfc18	MAGI family member, X-linked	protein-coding	19.38	18.86	17.68	18.1	19.64	36.37	14.62	28.79	20.65	18.58	41.71	12.84
Merged-chr13-111809484-6	chr13	111809399	111809599	+	979.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	-506.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	11.71	6.54	10.27	5.23	9.82	8.47	10.96	12.22	14.16	19.58	9.04	19.42
Merged-chr4-59436151-3	chr4	59436048	59436248	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 1 of 16)	MTD|LTR|ERVL-MaLR	2485.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	12.92	19.37	20.54	14.48	23.32	26.34	22.26	35.5	17.7	21.09	37.69	18.8
Merged-chr8-126582716-3	chr8	126582622	126582822	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10714.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	20.19	21.38	12.55	16.49	18.82	24.77	20.26	20.83	26.55	40.67	33.67	17.86
Merged-chr5-29290274-3	chr5	29290185	29290385	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88105.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	7.67	5.28	19.97	10.05	17.18	17.56	8.64	9.73	21.44	23.6	27.13	16.29
Merged-chr1-9597577-1	chr1	9597477	9597677	+	979.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015470, intron 3 of 4)	L1_Mus3|LINE|L1	-3690.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	8.88	4.02	4.56	10.46	18.82	12.86	15.28	13.07	7.47	1.0	6.03	3.13
Merged-chr10-62111010-3	chr10	62110876	62111076	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027251)	promoter-TSS (NM_027251)	-8.0	NM_001358253	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	21.8	12.58	13.69	6.84	17.59	7.84	12.62	10.12	11.41	9.54	12.56	14.1
Merged-chr19-5771252-4	chr19	5771073	5771273	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155264, intron 1 of 15)	CpG	246.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	13.73	28.93	14.83	18.5	24.55	20.07	26.24	12.9	30.88	36.65	24.62	24.43
Merged-chr12-111572570-1	chr12	111572470	111572670	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_045295, exon 2 of 2)	non-coding (NR_045295, exon 2 of 2)	1832.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	14.94	18.36	17.11	6.03	6.55	8.78	1.33	1.63	5.7	8.03	9.55	5.01
Merged-chr3-20295124-3	chr3	20295026	20295226	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19393.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	15.34	15.09	20.54	25.34	36.82	8.78	25.24	41.5	24.19	23.6	26.63	18.8
Merged-chr1-191266758-3	chr1	191266664	191266864	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42310.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	17.36	11.07	33.66	34.59	33.96	22.58	64.44	91.82	16.52	23.1	45.73	20.36
Merged-chr6-143225096-3	chr6	143224994	143225194	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20794.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	20.59	16.1	18.25	23.73	16.36	21.95	20.26	23.24	27.54	13.05	26.13	15.98
Merged-chr18-75342295-2	chr18	75342187	75342387	+	979.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24801.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	9.29	7.29	8.56	5.63	20.46	21.32	12.62	13.26	14.36	16.07	20.1	5.33
Merged-chrX-150813163-3	chrX	150813068	150813268	+	979.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358568)	promoter-TSS (NM_001358568)	-166.0	NM_001358566	80884.0	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	14.94	13.83	15.97	29.76	21.27	27.59	17.61	22.46	13.37	23.1	21.1	10.96
Merged-chr6-93758283-3	chr6	93758197	93758397	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029850, intron 8 of 23)	Tigger7|DNA|TcMar-Tigger	154666.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	48.86	45.53	36.51	63.15	56.05	71.49	81.38	128.75	31.86	15.57	51.76	13.78
Merged-chr6-52160249-3	chr6	52160151	52160351	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131181, intron 1 of 1)	intron (NR_131181, intron 1 of 1)	1727.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	27.05	15.59	43.35	27.75	12.68	10.35	19.6	21.03	24.59	17.57	46.23	29.13
Merged-chr1-39614997-3	chr1	39614891	39615091	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36191.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	16.15	18.86	17.68	16.49	18.0	20.07	9.3	10.54	21.05	24.1	21.61	17.86
Merged-chr2-74825849-3	chr2	74825755	74825955	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016804)	promoter-TSS (NM_016804)	43.0	NM_016804	53375.0	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	21.8	16.6	15.97	10.46	18.82	11.92	16.61	23.33	19.28	21.59	26.63	22.87
Merged-chr17-35050371-3	chr17	35050256	35050456	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033444, exon 1 of 6)	5' UTR (NM_033444, exon 1 of 6)	113.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	10.09	11.32	19.4	11.66	13.5	18.5	13.62	10.49	25.96	19.58	25.63	14.72
Merged-chr6-113334233-3	chr6	113334133	113334333	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_149720)	TTS (NR_149720)	7257.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	33.52	24.9	35.94	30.97	31.09	30.42	15.61	29.33	29.7	11.05	19.6	11.9
Merged-chr6-71537455-3	chr6	71537352	71537552	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-6400.0	NM_001361405	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	21.8	14.09	23.96	14.88	28.23	14.11	11.96	13.35	18.69	17.07	24.12	13.16
Merged-chr1-58711683-5	chr1	58711604	58711804	+	979.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289704, intron 1 of 9)	CpG	213.0	NR_149256	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	16.15	20.88	11.41	20.91	18.0	31.67	22.92	13.01	25.96	19.58	13.06	23.49
Merged-chr16-91477812-3	chr16	91477712	91477912	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7403.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	16.56	20.12	15.4	0.8	18.41	19.44	11.63	9.08	31.47	16.57	26.13	16.29
Merged-chr10-18194883-3	chr10	18194768	18194968	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	16022.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	14.13	11.07	18.83	23.73	15.14	19.76	21.26	23.3	23.41	27.62	25.63	19.74
Merged-chr2-132107230-3	chr2	132107143	132107343	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37865.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	18.57	14.59	18.25	5.63	24.55	28.54	23.25	38.61	24.59	15.57	17.08	18.8
Merged-chr5-105139612-3	chr5	105139508	105139708	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256005)	promoter-TSS (NM_001256005)	-22.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	21.4	21.63	23.39	20.11	22.09	14.11	9.97	3.62	36.39	21.09	30.15	18.17
Merged-chr7-46790861-3	chr7	46790757	46790957	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5024.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	11.71	24.65	36.51	14.88	26.18	18.81	21.59	33.39	26.36	23.1	28.64	22.24
Merged-chr3-36064755-3	chr3	36064654	36064854	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-1225.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	26.25	32.7	21.11	22.93	12.27	24.46	11.96	11.27	26.36	26.11	32.16	12.22
Merged-chr15-97379969-3	chr15	97379854	97380054	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132667.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	18.98	19.37	17.11	11.66	28.64	31.04	21.59	19.04	27.34	33.64	39.7	15.66
Merged-chr3-148202397-3	chr3	148202308	148202508	+	979.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	752227.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	47.65	53.83	39.93	37.0	58.91	89.05	45.18	41.22	23.6	38.66	45.22	10.02
Merged-chr10-117419039-3	chr10	117418896	117419096	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28439.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	10.09	10.06	6.85	3.22	10.23	21.64	20.59	9.14	19.87	18.58	9.04	10.02
Merged-chr12-46821625-2	chr12	46821550	46821750	+	979.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2875.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	4.85	4.53	6.85	16.89	15.55	16.93	22.26	34.51	12.39	11.55	19.09	13.78
Merged-chr15-97858661-1	chr15	97858561	97858761	+	979.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 9 of 9)	intron (NM_009504, intron 9 of 9)	-14159.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	7.27	2.52	9.13	6.84	3.68	4.08	4.32	6.64	9.83	7.03	7.54	2.51
Merged-chr2-34783757-2	chr2	34783613	34783813	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	11623.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	36.75	23.64	2.28	2.41	12.27	41.71	0.0	0.98	9.05	12.05	2.01	6.89
Merged-chr6-24954941-1	chr6	24954841	24955041	+	979.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	1184.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	2.02	1.01	0.0	0.8	14.73	16.31	10.63	14.75	6.29	8.03	9.55	1.25
Merged-chr17-35186176-5	chr17	35186061	35186261	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010734, intron 3 of 3)	intron (NM_010734, intron 3 of 3)	2279.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	20.19	10.06	8.56	12.07	18.82	16.93	13.95	14.02	14.95	12.55	11.56	10.65
Merged-chr4-126155262-3	chr4	126155156	126155356	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025856, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	7253.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	9.29	13.83	22.25	23.33	32.32	16.31	21.59	19.63	15.93	6.53	21.1	13.47
Merged-chr1-183978810-3	chr1	183978647	183978847	+	979.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	55251.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	10.09	12.07	19.4	24.94	10.64	9.72	24.58	24.95	26.75	19.58	42.71	24.43
Merged-chr16-4474641-3	chr16	4474547	4474747	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48428.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	8.88	11.07	25.67	18.5	18.0	14.42	17.94	21.7	18.69	17.07	21.1	20.68
Merged-chr14-26626803-3	chr14	26626711	26626911	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285467, intron 16 of 19)	intron (NM_001285467, intron 16 of 19)	-11323.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	19.79	12.32	15.4	25.34	18.82	21.95	23.92	33.67	20.65	19.58	21.61	9.4
Merged-chr6-66958674-3	chr6	66958578	66958778	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	61787.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	13.33	13.58	19.4	8.45	15.55	16.62	10.63	17.55	19.67	7.03	20.6	8.14
Merged-chr2-124790272-3	chr2	124790170	124790370	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136689.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	20.19	19.87	21.68	20.51	11.86	16.31	8.64	23.69	30.88	27.11	27.13	26.94
Merged-chr13-78237303-3	chr13	78237201	78237401	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045195)	TTS (NR_045195)	-38428.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	11.71	16.85	23.39	20.51	21.68	23.83	28.57	19.93	28.52	17.57	26.13	19.74
Merged-chr13-114078184-3	chr13	114078089	114078289	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	73403.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	43.21	49.05	39.36	17.7	31.09	61.77	44.84	50.33	63.14	62.76	57.79	32.27
Merged-chr2-11172335-3	chr2	11172246	11172446	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008859)	promoter-TSS (NM_008859)	-36.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	18.98	10.56	21.11	23.33	29.86	22.26	15.94	18.81	31.08	18.58	16.08	13.78
Merged-chr8-116268884-3	chr8	116268795	116268995	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-236120.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	12.92	23.39	13.69	25.74	21.27	17.56	21.59	27.62	33.63	22.09	48.74	12.53
Merged-chr9-124071696-3	chr9	124071608	124071808	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30475.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	20.59	10.31	22.82	16.89	22.91	23.2	31.22	28.96	13.57	29.12	32.66	25.06
Merged-chr18-65699325-3	chr18	65699224	65699424	+	979.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	1056.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	15.75	15.34	36.51	28.56	18.82	21.01	18.27	31.12	29.9	17.07	24.12	26.63
Merged-chr3-100530370-5	chr3	100530280	100530480	+	979.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41188.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	14.13	9.56	15.97	12.47	9.41	5.96	13.29	13.93	22.23	20.08	27.64	26.31
Merged-chr15-27234987-1	chr15	27234887	27235087	+	979.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-231690.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	5.65	2.52	6.85	3.62	11.86	11.6	5.31	15.25	10.82	7.03	19.6	7.21
Merged-chr5-150836992-3	chr5	150836907	150837107	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115600.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	10.5	13.33	41.07	19.71	15.96	14.11	18.27	27.14	24.39	13.05	39.19	20.68
Merged-chr1-166788133-3	chr1	166788053	166788253	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106308.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	9.29	16.6	18.25	22.12	37.23	35.43	50.82	56.44	41.11	48.2	51.76	30.39
Merged-chr18-68160746-5	chr18	68160660	68160860	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-67186.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	17.77	7.8	13.12	7.24	13.5	26.65	16.28	14.07	12.98	15.57	12.06	18.48
Merged-chr10-111785707-3	chr10	111785612	111785812	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	88664.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	24.63	18.61	25.1	26.14	20.86	28.22	26.91	40.74	17.11	12.05	32.66	11.9
Merged-chr10-67700974-3	chr10	67700860	67701060	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-129001.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	13.33	15.59	31.95	18.5	12.68	9.72	16.28	32.22	21.64	19.58	51.25	15.04
Merged-chr8-94711498-3	chr8	94711388	94711588	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15246.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	16.15	23.14	34.23	22.52	12.68	16.93	11.96	16.32	30.88	35.15	70.85	18.8
Merged-chr14-118178582-3	chr14	118178473	118178673	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	41446.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	24.23	18.11	15.97	16.49	20.05	18.19	12.95	20.22	15.93	19.08	24.62	8.77
Merged-chr12-101082913-3	chr12	101082826	101083026	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038047, exon 1 of 4)	non-coding (NR_038047, exon 1 of 4)	475.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	23.82	26.16	21.68	10.05	15.55	34.49	25.24	16.21	32.85	14.56	22.61	23.18
Merged-chr6-97797747-1	chr6	97797647	97797847	+	979.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9311.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	10.09	5.53	6.85	4.83	11.86	3.76	9.3	11.05	4.13	6.53	11.56	7.83
Merged-chr12-16879923-3	chr12	16879820	16880020	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15058.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	20.19	11.07	42.21	20.91	29.46	45.15	21.59	45.76	35.99	58.24	21.61	25.37
Merged-chr1-181540620-3	chr1	181540518	181540718	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29167.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	29.88	33.45	29.09	46.66	19.23	37.94	12.29	49.37	14.95	13.05	36.68	21.62
Merged-chr15-79753191-3	chr15	79753092	79753292	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	10494.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	22.61	21.63	14.83	17.7	19.23	32.61	19.93	17.38	18.69	16.57	8.04	3.45
Merged-chr17-31060819-3	chr17	31060737	31060937	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	3143.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	12.92	16.85	16.54	20.51	35.59	38.57	24.25	37.63	27.34	20.59	16.58	15.66
Merged-chr8-104251302-1	chr8	104251202	104251402	+	979.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037841, intron 1 of 2)	intron (NM_001037841, intron 1 of 2)	441.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	8.08	9.06	9.7	19.71	14.73	11.92	20.59	19.49	13.18	11.55	19.09	7.21
Merged-chr5-92528752-3	chr5	92528658	92528858	+	979.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23101.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	12.11	12.32	39.36	24.94	28.23	17.25	19.6	31.49	20.06	22.09	26.13	21.93
Merged-chr3-31216160-3	chr3	31216043	31216243	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172861, intron 7 of 7)	L1MA4|LINE|L1	66223.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	18.57	8.55	27.38	32.58	48.68	30.42	33.88	61.35	38.94	21.09	44.22	28.51
Merged-chr4-148069925-3	chr4	148069840	148070040	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	18124.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	28.27	21.88	42.78	28.96	35.18	29.48	7.97	20.89	46.03	48.2	22.61	29.13
Merged-chr10-34129746-3	chr10	34129673	34129873	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1801.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	15.75	17.1	10.84	10.86	20.05	17.87	23.92	24.03	21.24	13.05	16.08	14.41
Merged-chr9-25532331-3	chr9	25532211	25532411	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	50714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	13.33	8.8	34.8	24.13	30.68	27.28	33.88	47.52	23.6	33.14	35.68	20.68
Merged-chr12-85601160-2	chr12	85601008	85601208	+	979.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1090.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	8.48	4.53	3.99	4.42	12.68	6.59	5.65	6.5	11.01	16.07	12.06	9.71
Merged-chr5-113626618-3	chr5	113626522	113626722	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16981.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	14.13	10.31	22.25	6.44	34.36	51.74	38.2	32.94	45.04	43.18	39.7	19.42
Merged-chr8-83144821-3	chr8	83144714	83144914	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-20538.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	55.32	73.45	71.88	53.09	74.05	76.2	53.48	59.5	28.52	36.15	20.6	10.65
Merged-chr4-149690212-3	chr4	149690134	149690334	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	8474.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	33.52	31.69	7.99	5.63	20.46	33.55	13.95	7.68	32.06	44.69	23.62	2.19
Merged-chr3-52453301-3	chr3	52453201	52453401	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63663.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	21.0	22.64	38.79	49.07	17.59	27.59	28.57	38.8	21.05	15.06	41.71	19.74
Merged-chr5-98031201-3	chr5	98031081	98031281	+	979.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133738)	promoter-TSS (NM_133738)	-219.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	22.21	13.83	14.26	35.39	35.18	26.65	33.22	26.86	10.42	25.11	22.61	14.41
Merged-chr13-76024846-3	chr13	76024746	76024946	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6134.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	27.46	16.6	19.4	33.38	23.32	9.41	14.62	30.08	31.27	23.6	23.62	14.1
Merged-chr6-99523458-3	chr6	99523356	99523556	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2463.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	18.98	12.83	24.53	9.25	27.82	33.87	15.94	19.35	26.95	17.57	29.14	12.22
Merged-chrX-53057249-3	chrX	53057135	53057335	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038184)	promoter-TSS (NR_038184)	-45.0	NR_038184	72575.0	Mm.59516	NR_038184		C430049B03Rik	2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503	RIKEN cDNA C430049B03 gene	ncRNA	20.59	28.42	25.1	31.77	33.14	26.34	25.24	43.37	26.95	21.59	36.68	9.4
Merged-chr16-36940415-3	chr16	36940319	36940519	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5436.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	30.69	27.92	21.68	4.42	23.32	58.32	12.95	6.73	48.78	34.65	40.2	9.4
Merged-chr10-96646270-3	chr10	96646214	96646414	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29313.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	16.96	24.4	28.52	12.87	15.55	25.09	18.6	20.66	28.72	14.56	19.09	6.89
Merged-chr6-17584164-3	chr6	17584063	17584263	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52847.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	11.71	17.61	29.09	15.69	20.46	18.19	33.55	31.93	31.27	33.14	51.25	20.36
Merged-chr5-146750045-2	chr5	146749947	146750147	+	979.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	44909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.85	4.78	6.85	8.04	16.36	10.35	15.61	25.96	12.78	14.56	32.66	16.92
Merged-chr7-49253197-3	chr7	49253138	49253338	+	979.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	7049.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	10.5	8.05	11.41	20.11	36.82	29.48	25.91	46.26	19.08	51.72	13.57	13.16
Merged-chr11-69802977-3	chr11	69802883	69803083	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027913)	promoter-TSS (NR_027913)	-686.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	27.86	12.32	23.96	28.96	41.73	15.68	12.95	23.89	31.08	16.07	24.12	15.98
Merged-chr4-132474791-3	chr4	132474674	132474874	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10853.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	21.4	9.56	14.83	21.32	52.37	26.34	20.26	38.07	26.36	27.11	43.21	25.06
Merged-chr11-46120338-3	chr11	46120248	46120448	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7556.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	12.92	11.57	25.67	30.57	20.86	35.12	24.58	28.6	48.98	30.63	66.83	20.68
Merged-chr12-3892913-3	chr12	3892823	3893023	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	1179.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	25.44	17.36	24.53	14.88	34.36	21.32	33.55	41.1	24.19	23.1	19.6	24.12
Merged-chr15-27682809-3	chr15	27682680	27682880	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1238.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	12.52	11.07	10.27	19.71	37.23	25.71	21.92	25.37	19.67	22.59	24.12	23.18
Merged-chr11-31871463-3	chr11	31871327	31871527	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290676, exon 1 of 9)	5' UTR (NM_001290676, exon 1 of 9)	487.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	23.02	37.98	18.25	12.47	38.05	66.48	32.22	32.8	33.24	30.63	20.6	23.49
Merged-chr1-152556863-3	chr1	152556739	152556939	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68378.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	16.15	5.28	4.56	19.71	23.73	15.05	10.3	33.53	7.87	17.07	22.61	10.96
Merged-chr8-107048414-5	chr8	107048358	107048558	+	979.085693	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_139229)	TTS (NM_139229)	156.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	12.11	12.83	4.56	12.87	11.45	11.6	16.94	12.0	9.24	17.57	19.6	15.66
Merged-chr2-6582937-3	chr2	6582822	6583022	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 11 of 15)	ORR1E|LTR|ERVL-MaLR	138740.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	24.23	8.55	22.25	32.58	15.96	28.54	12.95	36.34	22.03	18.08	28.14	16.29
Merged-chr10-14959265-3	chr10	14959166	14959366	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	198977.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	17.77	12.07	18.83	20.11	39.68	35.75	34.88	73.01	22.62	13.05	32.16	14.1
Merged-chr6-72355272-3	chr6	72355243	72355443	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144916)	promoter-TSS (NM_144916)	-140.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	14.13	22.89	6.28	22.12	19.23	21.64	24.25	20.5	21.44	16.07	23.11	16.92
Merged-chr2-52862121-3	chr2	52862014	52862214	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	4246.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	19.79	28.17	19.97	14.88	27.0	32.3	17.94	19.79	28.72	32.13	37.69	13.78
Merged-chr10-79927002-3	chr10	79926893	79927093	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-50.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	25.44	16.85	16.54	9.65	30.68	26.34	9.3	20.83	41.3	22.59	30.15	22.87
Merged-chr9-104663664-2	chr9	104663563	104663763	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	94180.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	10.9	16.1	22.82	41.83	80.59	36.37	34.55	71.47	1.97	4.02	3.01	0.31
Merged-chr16-76217877-1	chr16	76217777	76217977	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	95264.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	5.65	4.53	0.0	1.61	4.09	0.63	6.98	10.15	1.97	4.02	3.52	4.39
Merged-chr12-17764245-1	chr12	17764145	17764345	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	73436.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.62	2.01	7.99	5.23	10.23	3.76	2.66	9.34	6.69	11.05	3.52	4.7
Merged-chr14-70931135-1	chr14	70931035	70931235	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	41028.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.83	2.77	7.99	3.62	6.55	4.39	6.98	12.03	5.9	2.51	9.55	3.45
Merged-chr6-131272503-3	chr6	131272410	131272610	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20734.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	15.34	16.85	15.97	16.89	26.59	21.64	16.28	22.12	23.21	25.61	23.11	8.77
Merged-chr7-16002388-3	chr7	16002315	16002515	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-2920.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	14.54	20.88	26.81	35.39	31.5	15.37	33.22	74.47	12.39	8.03	15.58	16.29
Merged-chr7-28373797-1	chr7	28373697	28373897	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1135.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	11.31	17.1	18.83	14.08	19.64	16.93	10.63	7.71	17.9	24.6	18.59	19.42
Merged-chr11-102434604-3	chr11	102434511	102434711	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008175, intron 7 of 12)	intron (NM_008175, intron 7 of 12)	4289.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	25.04	17.36	17.11	11.26	11.45	23.52	9.63	10.15	27.14	20.59	30.15	24.43
Merged-chr15-78810382-3	chr15	78810286	78810486	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-7344.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	20.59	18.86	31.38	15.69	11.86	21.64	8.97	14.92	15.54	14.56	25.12	8.46
Merged-chr2-10142859-1	chr2	10142759	10142959	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10684.0	NM_172471	209378.0	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	4.44	2.77	5.7	5.23	4.09	4.39	8.64	9.67	6.1	2.01	3.01	6.27
Merged-chr1-161500517-2	chr1	161500418	161500618	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	5861.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	11.31	7.04	9.7	5.23	16.36	10.98	14.28	11.24	23.21	13.56	8.04	5.33
Merged-chr15-53566427-3	chr15	53566324	53566524	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	UCON29|DNA|PiggyBac?	47855.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	15.75	16.1	35.37	26.95	17.18	23.83	39.53	43.6	43.86	16.57	39.7	21.62
Merged-chr11-83942136-3	chr11	83942083	83942283	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030096)	promoter-TSS (NM_030096)	93.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	31.09	23.9	25.67	16.49	26.18	24.77	10.96	21.06	28.72	31.63	37.18	21.62
Merged-chr2-129572778-3	chr2	129572676	129572876	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20063.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	21.0	20.88	34.23	26.14	12.68	20.38	19.27	17.24	31.86	20.59	16.58	15.35
Merged-chr4-137866374-3	chr4	137866282	137866482	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	4145.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	23.42	10.82	23.96	32.98	30.27	15.37	19.93	30.59	32.45	21.59	36.18	17.86
Merged-chr5-147527972-3	chr5	147527870	147528070	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 11 of 18)	intron (NM_028291, intron 11 of 18)	97814.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	16.96	10.82	25.67	17.7	19.64	12.23	14.62	23.27	24.39	31.63	20.1	16.29
Merged-chr13-76018229-1	chr13	76018129	76018329	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	333.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	13.33	13.58	9.13	19.31	15.96	18.5	24.91	18.98	28.52	29.62	26.13	20.99
Merged-chr17-73095265-3	chr17	73095167	73095367	+	978.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12718.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	9.29	13.08	15.97	18.1	15.55	19.44	19.27	27.08	14.75	13.56	27.13	12.84
Merged-chr13-34278324-3	chr13	34278222	34278422	+	978.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66860.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	23.82	5.79	27.38	20.91	40.09	17.87	12.95	28.57	14.95	14.56	19.6	12.84
Merged-chr1-182960217-3	chr1	182960063	182960263	+	978.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	MIRb|SINE|MIR	5375.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	10.9	10.56	25.1	12.87	17.59	17.87	16.61	15.22	12.39	23.1	15.07	9.08
Merged-chr3-106684959-3	chr3	106684873	106685073	+	978.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039478)	promoter-TSS (NM_001039478)	-14.0	NM_001039478	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	17.77	11.07	19.4	24.53	31.91	24.77	5.65	23.78	27.34	16.07	54.77	21.93
Merged-chr1-45880996-3	chr1	45880900	45881100	+	978.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	44594.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	18.98	12.83	9.7	30.16	18.0	21.01	15.61	24.95	32.45	35.15	36.18	21.3
Merged-chr18-79936829-2	chr18	79936693	79936893	+	978.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110102.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	5.65	8.55	8.56	14.08	11.45	8.47	16.94	11.05	0.0	1.0	0.5	0.0
Merged-chr6-50340830-2	chr6	50340720	50340920	+	978.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 9 of 21)	MTC|LTR|ERVL-MaLR	42017.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	23.02	19.62	33.66	19.71	0.82	0.94	1.33	0.36	22.23	19.08	16.08	13.78
Merged-chr13-65019483-3	chr13	65019392	65019592	+	978.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13566.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	15.34	17.61	19.4	28.96	11.05	11.92	17.94	34.23	16.72	21.59	18.09	20.68
Merged-chr3-21955856-3	chr3	21955770	21955970	+	978.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120782.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	15.75	10.06	16.54	26.14	21.27	13.8	17.27	34.09	16.92	27.11	35.17	10.65
Merged-chr2-35327089-3	chr2	35326970	35327170	+	978.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9939.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	21.0	14.84	19.4	15.28	13.91	23.83	17.94	22.43	22.82	12.05	23.62	15.04
Merged-chr13-56197694-3	chr13	56197585	56197785	+	978.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18800.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	21.8	22.39	26.24	20.91	25.36	24.15	8.64	18.08	42.68	28.12	30.15	20.99
Merged-chr15-12010593-3	chr15	12010485	12010685	+	978.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14578.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	11.71	14.84	12.55	9.65	16.77	10.66	15.94	11.83	16.92	15.57	13.57	13.47
Merged-chr15-96593283-3	chr15	96593250	96593450	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	48612.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	18.57	22.64	17.11	4.02	11.45	20.38	4.65	10.29	23.41	14.06	18.59	11.9
Merged-chr7-44351455-3	chr7	44351346	44351546	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 23 of 24)	intron (NM_001034115, intron 23 of 24)	23584.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	20.19	23.14	18.83	23.73	13.09	29.16	11.96	16.79	33.04	24.1	30.65	11.59
Merged-chr10-78063332-3	chr10	78063233	78063433	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001284199, exon 6 of 6)	exon (NM_001284199, exon 6 of 6)	-6035.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	28.27	12.58	25.1	32.58	20.05	11.29	10.3	16.93	28.13	17.57	22.61	12.53
Merged-chr11-35827919-3	chr11	35827797	35827997	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025936, intron 3 of 14)	intron (NM_025936, intron 3 of 14)	6631.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	15.34	18.86	24.53	15.28	6.14	17.87	23.25	25.65	27.34	10.04	24.62	17.54
Merged-chr16-17012774-3	chr16	17012646	17012846	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038663, intron 1 of 7)	intron (NM_001038663, intron 1 of 7)	29364.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	70.26	29.18	17.11	45.85	42.55	50.49	27.57	37.93	49.96	49.21	60.3	27.57
Merged-chr3-106560269-3	chr3	106560166	106560366	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	MTA_Mm|LTR|ERVL-MaLR	-12464.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	10.9	12.83	14.83	16.09	25.77	23.52	19.93	16.23	18.88	15.06	27.64	23.18
Merged-chr10-81389577-3	chr10	81389484	81389684	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3237.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	14.94	18.86	15.97	16.09	17.59	20.7	17.94	21.17	24.98	15.06	28.64	21.3
Merged-chr5-125521366-3	chr5	125521250	125521450	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11068.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	14.54	10.56	15.4	13.27	13.5	19.76	13.95	15.03	23.6	16.07	32.16	11.9
Merged-chr7-12909681-3	chr7	12909549	12909749	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001447)	TTS (NM_001001447)	11840.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	3.63	10.82	13.12	10.05	24.55	12.54	7.64	16.15	16.52	21.09	30.65	16.29
Merged-chr1-165642001-3	chr1	165641897	165642097	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7456.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	14.54	17.86	13.12	16.89	13.91	19.44	10.3	11.69	17.7	18.08	21.61	7.83
Merged-chr7-80652502-3	chr7	80652391	80652591	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	16474.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	17.77	13.58	26.81	22.52	25.77	15.37	12.62	21.76	29.31	12.05	24.62	12.53
Merged-chr19-37436644-3	chr19	37436527	37436727	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1786.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	20.59	25.15	30.23	23.33	11.45	28.85	22.26	23.05	14.75	18.58	23.11	15.66
Merged-chr7-143686317-3	chr7	143686215	143686415	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	-440.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	16.15	24.65	27.38	23.73	10.64	12.23	12.62	9.36	27.73	23.6	20.1	17.23
Merged-chr5-123080303-3	chr5	123080192	123080392	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	4017.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	26.65	26.66	14.26	12.47	28.23	24.46	10.96	27.17	28.91	21.09	27.64	17.23
Merged-chr5-20864759-3	chr5	20864653	20864853	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	17371.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	32.71	31.19	22.25	15.69	28.23	39.2	11.29	26.07	35.6	26.11	42.21	10.02
Merged-chr15-84856179-3	chr15	84856080	84856280	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081166)	promoter-TSS (NM_001081166)	-51.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	12.92	15.34	15.4	21.72	19.23	26.03	12.29	26.05	47.21	42.18	47.23	22.24
Merged-chr10-117363264-3	chr10	117363168	117363368	+	978.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013391, intron 3 of 9)	B2_Mm2|SINE|B2	13705.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	21.8	17.1	17.11	15.28	23.32	15.05	4.98	13.57	23.6	20.08	19.09	17.23
Merged-chr13-45267566-3	chr13	45267472	45267672	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-122170.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	52.09	25.15	47.35	44.24	58.5	25.71	67.76	95.13	13.96	5.52	15.07	16.92
Merged-chr12-32709580-3	chr12	32709489	32709689	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110746.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	13.33	18.61	22.25	25.34	22.91	31.67	29.9	22.4	27.34	25.11	33.67	8.46
Merged-chr10-60260306-3	chr10	60260211	60260411	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17317.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.27	11.82	14.26	13.27	12.68	4.08	18.6	13.46	12.39	15.06	28.14	20.05
Merged-chr14-30607875-3	chr14	30607770	30607970	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 3 of 17)	intron (NM_011103, intron 3 of 17)	2440.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	14.94	8.8	17.11	12.47	27.41	26.65	18.6	20.47	28.13	23.6	25.12	11.28
Merged-chr19-3936610-3	chr19	3936512	3936712	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	1426.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	24.63	19.12	22.82	17.7	32.73	23.52	7.31	18.9	37.37	33.64	21.1	16.6
Merged-chr4-121214663-3	chr4	121214537	121214737	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	447.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	24.63	8.55	10.84	12.87	6.14	16.62	16.61	12.14	22.03	26.11	43.21	24.12
Merged-chr8-40610431-2	chr8	40610322	40610522	+	978.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24370.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.44	6.04	9.7	12.07	13.5	11.29	22.92	34.65	91.85	53.73	120.6	66.41
Merged-chr8-54562346-2	chr8	54562248	54562448	+	978.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12017.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	2.42	2.26	1.14	9.65	8.59	12.54	9.63	25.63	8.26	9.54	26.63	15.04
Merged-chr12-79190970-3	chr12	79190862	79191062	+	978.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-1.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	29.07	8.3	13.69	4.83	24.14	33.24	20.59	20.86	26.55	15.06	27.64	14.72
Merged-chr6-33835430-3	chr6	33835316	33835516	+	978.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-194032.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	16.15	12.07	46.21	27.35	11.86	24.46	24.58	50.22	45.04	30.13	59.8	34.77
Merged-chr13-34314222-3	chr13	34314135	34314335	+	978.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	30947.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	15.75	20.12	12.55	21.72	22.09	34.49	13.62	26.13	30.88	27.11	22.61	8.14
Merged-chr16-76530997-3	chr16	76530899	76531099	+	978.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17796.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	12.11	10.82	35.94	20.91	33.55	50.8	47.17	52.35	34.62	46.7	39.7	29.76
Merged-chr2-27075687-2	chr2	27075576	27075776	+	978.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3515.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	7.27	14.59	19.97	21.32	13.09	13.17	14.95	14.86	7.87	7.53	16.08	5.95
Merged-chr10-39420040-3	chr10	39419945	39420145	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	50246.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	16.96	14.09	33.09	25.34	15.96	7.84	17.61	25.35	22.03	17.07	25.63	15.98
Merged-chr17-31905950-3	chr17	31905866	31906066	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50162.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	24.63	11.07	38.79	24.13	30.27	31.98	40.86	31.96	12.19	12.05	27.64	16.6
Merged-chr6-28880931-4	chr6	28880828	28881028	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-49181.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	14.13	12.07	18.25	14.48	10.64	14.11	15.94	7.6	10.23	8.54	17.59	11.28
Merged-chr6-28215427-4	chr6	28215372	28215572	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	46129.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	14.94	16.1	7.99	4.02	6.14	19.44	12.95	8.33	16.72	10.54	21.1	11.28
Merged-chr6-115838490-3	chr6	115838409	115838609	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110506)	promoter-TSS (NM_001110506)	-97.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	12.52	8.05	19.4	11.26	19.23	29.16	9.63	14.33	36.78	40.17	29.14	18.8
Merged-chr8-105996498-3	chr8	105996381	105996581	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176913)	promoter-TSS (NM_176913)	-58.0	NM_176913	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	20.59	27.17	13.12	17.7	47.46	34.81	23.25	29.47	26.36	21.09	49.24	25.06
Merged-chr8-83662543-3	chr8	83662433	83662633	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018771, intron 4 of 6)	intron (NM_018771, intron 4 of 6)	-4111.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	23.42	21.88	13.12	12.87	17.18	36.06	11.96	14.5	43.27	42.68	42.71	15.66
Merged-chr3-89270539-3	chr3	89270438	89270638	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009057)	promoter-TSS (NM_009057)	32.0	NM_009057	19729.0	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	25.44	21.63	26.81	18.1	22.91	16.31	10.3	15.34	16.13	15.57	25.63	4.39
Merged-chr16-87716527-3	chr16	87716430	87716630	+	978.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	17576.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	15.75	11.82	35.94	20.91	27.82	9.09	19.27	36.59	31.27	22.09	29.65	21.3
Merged-chr18-66436785-3	chr18	66436672	66436872	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21832.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	14.13	11.82	19.4	12.47	28.23	26.03	17.61	35.5	35.01	32.64	55.78	21.93
Merged-chr1-171887289-3	chr1	171887185	171887385	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 8 of 8)	intron (NM_001289470, intron 8 of 8)	-30177.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	11.31	13.33	42.21	31.77	26.18	21.01	30.23	25.35	46.42	29.62	47.23	40.1
Merged-chr17-34606469-3	chr17	34606399	34606599	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	638.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	30.28	54.58	23.96	5.63	28.64	46.1	18.93	7.18	40.71	47.2	20.1	13.16
Merged-chr2-4457897-3	chr2	4457792	4457992	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56916.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	16.56	17.1	25.1	16.49	13.09	14.74	10.96	9.64	46.03	24.6	37.18	7.52
Merged-chr7-99432510-1	chr7	99432410	99432610	+	978.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362168, intron 4 of 17)	MIR|SINE|MIR	-33494.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.63	4.28	2.28	9.65	13.91	13.8	5.98	10.79	5.31	4.52	9.55	5.01
Merged-chr18-6774848-3	chr18	6774730	6774930	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	9663.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	36.34	16.6	35.94	34.59	22.5	17.87	16.28	27.28	24.59	18.58	17.59	12.84
Merged-chr18-60638426-3	chr18	60638328	60638528	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14123.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	21.8	18.86	25.1	30.57	42.55	79.96	28.57	38.83	19.08	12.55	28.14	14.41
Merged-chr4-46575022-3	chr4	46574934	46575134	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-8594.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	12.52	8.05	12.55	24.94	15.55	16.93	12.29	20.36	18.69	16.07	18.09	12.53
Merged-chr17-84083603-5	chr17	84083492	84083692	+	978.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	4932.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	15.34	17.1	9.13	14.08	6.14	10.98	9.3	8.55	16.33	17.07	7.54	11.28
Merged-chr12-80807560-3	chr12	80807464	80807664	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	17032.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	21.4	12.32	29.66	19.31	20.86	35.12	10.3	23.61	27.54	28.62	32.66	13.78
Merged-chr7-120851727-3	chr7	120851620	120851820	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267711, intron 1 of 17)	intron (NM_001267711, intron 1 of 17)	531.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	41.99	29.68	51.34	68.37	31.5	15.99	39.86	64.04	16.72	13.05	24.62	23.18
Merged-chr18-36454493-3	chr18	36454376	36454576	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026027)	promoter-TSS (NM_026027)	19.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	15.34	20.63	19.97	13.67	20.86	29.48	16.61	24.2	26.75	34.14	21.1	16.6
Merged-chr7-101540900-3	chr7	101540802	101541002	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14900.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	44.42	12.32	27.38	24.53	24.14	21.64	10.96	25.65	16.72	18.58	17.59	18.17
Merged-chr17-73972465-2	chr17	73972336	73972536	+	978.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22240.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.44	5.03	6.28	7.24	4.5	6.9	5.31	17.94	20.26	15.06	37.18	35.4
Merged-chr16-20716311-3	chr16	20716202	20716402	+	978.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009900, exon 1 of 24)	5' UTR (NM_009900, exon 1 of 24)	334.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	16.96	12.32	17.68	12.07	20.05	27.59	16.61	18.34	13.37	19.58	19.09	22.56
Merged-chr6-97447196-3	chr6	97447086	97447286	+	978.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12100.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	17.36	11.82	34.23	33.78	58.09	48.6	33.55	60.03	40.71	33.64	52.26	24.75
Merged-chr18-4287993-3	chr18	4287892	4288092	+	978.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64961.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	13.33	11.07	18.83	18.5	26.18	21.01	26.91	37.6	18.88	17.57	37.69	23.49
Merged-chr15-99001699-2	chr15	99001587	99001787	+	978.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15722.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.4	1.26	0.0	0.8	8.18	11.92	14.62	4.68	19.08	10.04	12.56	13.16
Merged-chr13-39923342-2	chr13	39923242	39923442	+	978.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	364669.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	6.46	5.53	3.99	13.67	21.68	12.54	11.63	30.28	29.5	30.13	39.19	16.6
Merged-chr18-60813660-2	chr18	60813694	60813894	+	978.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198984)	TTS (NM_001198984)	1718.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	4.04	17.1	1.71	0.4	1.23	8.47	0.66	0.0	13.37	19.58	2.01	4.07
Merged-chr13-41074045-3	chr13	41073928	41074128	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3563.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	11.31	14.84	33.09	14.48	18.82	32.93	16.28	16.96	26.95	35.65	21.1	24.12
Merged-chr3-100641309-3	chr3	100641199	100641399	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010763, intron 5 of 12)	intron (NM_010763, intron 5 of 12)	44174.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	7.67	13.33	25.1	32.98	11.05	12.54	9.63	28.35	19.67	9.54	23.62	20.99
Merged-chr12-111696522-3	chr12	111696416	111696616	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16437.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	14.94	16.1	21.11	22.12	28.64	10.35	12.95	18.0	28.72	31.63	22.11	25.37
Merged-chr11-119711015-3	chr11	119710915	119711115	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	108110.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	17.77	10.56	25.67	26.55	25.36	25.09	19.93	24.06	22.03	9.54	26.63	23.49
Merged-chr10-115343234-3	chr10	115343148	115343348	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359472, intron 6 of 6)	intron (NM_001359472, intron 6 of 6)	19001.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	21.4	25.15	11.98	26.14	20.05	17.25	17.94	44.13	24.19	20.59	47.23	32.27
Merged-chr7-19072315-3	chr7	19072228	19072428	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031255, intron 5 of 5)	B1F|SINE|Alu	-3872.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	16.96	10.56	16.54	26.55	26.18	29.48	26.24	28.09	52.12	55.23	57.28	27.25
Merged-chr3-89912451-3	chr3	89912320	89912520	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	776.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	26.25	21.88	23.96	12.47	38.05	26.34	25.24	20.3	27.14	33.64	26.13	19.42
Merged-chr1-176813601-3	chr1	176813522	176813722	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1038.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	14.54	17.1	8.56	19.31	27.0	17.56	20.93	19.99	36.58	26.61	28.64	14.41
Merged-chr1-127206356-5	chr1	127206266	127206466	+	978.293335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	1380.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	13.33	13.83	11.41	18.9	13.91	11.29	18.27	18.06	18.29	14.06	19.6	11.59
Merged-chr5-135463602-3	chr5	135463513	135463713	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69067.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	21.0	9.81	17.68	19.31	29.86	25.4	22.26	33.39	21.05	14.56	20.1	19.11
Merged-chr15-62055170-3	chr15	62055068	62055268	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	L2c|LINE|L2	15911.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	14.13	9.81	23.39	25.74	13.09	26.65	16.61	32.16	16.92	17.07	38.19	19.11
Merged-chr15-78573229-3	chr15	78573142	78573342	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-459.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	14.13	11.82	22.25	12.07	22.09	33.55	15.28	20.97	42.88	26.61	30.15	27.88
Merged-chr2-122154111-3	chr2	122154026	122154226	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	6439.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	24.63	23.9	17.11	12.87	20.05	23.52	13.62	10.32	39.73	27.62	39.7	13.78
Merged-chr15-53644218-3	chr15	53644123	53644323	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	B3A|SINE|B2	-29944.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	14.13	10.31	26.24	17.7	19.64	21.64	14.95	34.09	24.39	23.1	30.15	13.78
Merged-chr11-101253793-3	chr11	101253705	101253905	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284414)	promoter-TSS (NM_001284414)	98.0	NM_026776	28084.0	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	17.36	15.34	14.83	20.51	17.18	22.89	13.62	12.42	19.87	15.06	14.07	9.08
Merged-chr9-65435805-3	chr9	65435705	65435905	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027134)	promoter-TSS (NM_027134)	23.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	31.5	25.66	12.55	13.27	33.96	29.16	10.63	16.07	34.42	24.6	29.14	24.43
Merged-chr13-9472882-3	chr13	9472785	9472985	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	196360.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	14.54	12.83	9.7	13.67	27.41	12.86	17.61	22.37	22.03	31.13	23.11	12.84
Merged-chr10-8766274-3	chr10	8766191	8766391	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	119779.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	15.34	20.37	26.81	11.66	23.73	32.93	19.93	20.64	16.92	19.58	7.03	4.7
Merged-chr2-103796594-3	chr2	103796510	103796710	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111292, intron 1 of 16)	CpG	468.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	12.11	12.32	14.83	13.27	15.96	13.8	10.96	9.87	27.14	22.09	29.14	18.8
Merged-chr8-70869670-3	chr8	70869586	70869786	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026964, intron 2 of 4)	intron (NM_026964, intron 2 of 4)	3804.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	19.38	10.56	6.85	6.44	21.27	11.6	11.63	10.07	17.51	18.58	29.65	9.4
Merged-chr17-46892708-3	chr17	46892606	46892806	+	978.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178385)	TTS (NM_178385)	2085.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	23.02	14.09	26.81	20.11	19.64	28.85	26.57	20.72	20.06	13.56	20.1	16.6
Merged-chr6-83317597-3	chr6	83317465	83317665	+	978.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008638)	promoter-TSS (NM_008638)	39.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	31.9	17.36	19.97	15.28	16.77	31.04	10.3	16.51	26.75	32.64	30.15	16.29
Merged-chr14-14869418-2	chr14	14869314	14869514	+	978.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195229, intron 21 of 34)	HAL1|LINE|L1	48599.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	17.77	12.07	45.64	37.0	14.32	2.82	7.64	12.0	6.29	2.51	9.55	4.07
Merged-chr3-137833312-3	chr3	137833204	137833404	+	978.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31183.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	37.55	28.17	12.55	4.42	20.05	39.2	25.24	13.99	33.24	36.65	20.1	11.59
Merged-chr8-117257417-4	chr8	117257318	117257518	+	978.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	399.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	15.75	16.6	13.12	10.46	14.32	15.37	16.28	19.79	18.69	24.6	17.08	23.49
Merged-chr10-127602758-3	chr10	127602653	127602853	+	978.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	18395.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	18.98	10.56	18.25	11.26	24.55	15.68	21.92	34.74	16.13	17.57	25.63	11.9
Merged-chr11-106429844-3	chr11	106429758	106429958	+	978.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 4 of 21)	intron (NM_023913, intron 4 of 21)	-47077.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	30.28	22.64	30.23	26.14	31.5	36.69	35.54	21.73	26.75	34.14	15.58	10.34
Merged-chr17-33947543-3	chr17	33947456	33947656	+	978.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020603, intron 10 of 14)	intron (NM_020603, intron 10 of 14)	3932.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	13.73	19.87	19.97	10.46	23.32	39.2	22.26	17.92	23.21	36.15	24.12	25.37
Merged-chr11-6522981-3	chr11	6522894	6523094	+	978.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2036.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	27.05	50.05	30.23	8.04	22.5	56.13	10.63	11.55	32.45	26.11	20.6	4.07
Merged-chrX-70365059-3	chrX	70364945	70365145	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010498)	promoter-TSS (NM_010498)	40.0	NM_010498	15931.0	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	21.0	15.59	16.54	20.11	37.64	26.34	13.29	21.9	23.01	21.59	26.63	11.9
Merged-chr3-69667551-3	chr3	69667452	69667652	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-54503.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	16.56	10.31	32.52	16.89	33.14	32.61	12.62	37.77	30.88	26.61	47.74	20.68
Merged-chr13-114964446-3	chr13	114964345	114964545	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-32345.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	18.17	12.83	25.67	18.5	13.5	16.93	9.97	19.68	24.98	14.56	22.11	11.9
Merged-chr16-52453208-3	chr16	52453112	52453312	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331110)	promoter-TSS (NM_001331110)	-131.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	25.44	21.13	18.25	34.59	36.82	34.49	53.15	43.15	20.06	19.08	34.67	9.08
Merged-chr19-40650285-3	chr19	40650194	40650394	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1MC3|LINE|L1	-9476.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	16.15	16.85	19.4	26.14	25.36	17.56	21.92	26.94	19.08	12.05	25.12	10.02
Merged-chr9-61257725-3	chr9	61257619	61257819	+	978.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	36090.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	16.56	16.6	19.97	18.1	33.14	41.08	15.61	14.38	36.58	30.63	27.13	11.9
Merged-chr4-40364436-2	chr4	40364353	40364553	+	978.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51221.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	14.13	4.02	7.42	3.62	17.59	23.52	21.26	13.32	17.51	14.56	5.53	2.82
Merged-chr7-129531838-1	chr7	129531738	129531938	+	978.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-60025.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.46	2.01	1.14	3.62	4.91	0.94	8.3	7.68	2.75	4.52	6.03	4.07
Merged-chr7-26253582-3	chr7	26253484	26253684	+	978.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13247.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	12.11	13.83	22.25	20.51	15.96	32.3	33.22	36.48	16.92	14.06	31.66	9.4
Merged-chr17-87302133-1	chr17	87302033	87302233	+	978.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19247.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	10.9	7.04	13.12	11.66	12.68	13.17	7.64	9.59	21.83	12.05	10.55	14.1
Merged-chr12-78227325-3	chr12	78227195	78227395	+	978.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172952, intron 1 of 23)	CpG	640.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	14.94	21.88	12.55	28.56	9.82	19.76	11.63	12.62	23.8	23.6	16.58	10.96
Merged-chr7-121332875-1	chr7	121332775	121332975	+	978.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59421.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	3.63	1.51	2.28	19.31	15.55	10.66	5.65	8.38	23.21	14.56	18.59	15.98
Merged-chr7-19921088-3	chr7	19920992	19921192	+	978.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	51.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	16.15	32.2	33.09	26.55	13.5	19.76	11.29	22.09	21.44	10.04	46.23	19.74
Merged-chr11-95042292-3	chr11	95042180	95042380	+	977.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-909.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	16.56	21.13	16.54	19.31	29.46	22.26	13.29	13.54	13.37	14.06	10.05	15.66
Merged-chr7-34390923-3	chr7	34390824	34391024	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-1219.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	12.92	18.86	13.69	23.73	34.77	23.83	22.59	23.41	20.46	31.63	28.14	19.42
Merged-chr4-63402749-3	chr4	63402627	63402827	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	718.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	48.05	42.26	30.23	14.48	36.82	81.84	34.21	24.28	45.04	53.22	49.24	23.49
Merged-chr14-32168403-3	chr14	32168303	32168503	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	2614.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	24.23	13.58	11.41	20.91	16.36	12.23	31.56	27.11	20.46	15.57	28.14	10.65
Merged-chr5-90900392-3	chr5	90900274	90900474	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3525.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	19.38	16.85	32.52	14.88	13.09	20.07	15.61	16.21	21.83	15.06	10.55	10.65
Merged-chr2-46245946-3	chr2	46245838	46246038	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	549333.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	12.92	13.08	18.25	24.13	27.82	25.71	21.92	31.18	37.96	28.62	32.66	13.78
Merged-chrX-38431356-3	chrX	38431254	38431454	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 5 of 9)	intron (NR_152733, intron 5 of 9)	25106.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	16.56	19.87	25.67	14.48	21.68	18.81	22.92	20.36	24.39	26.11	15.58	17.86
Merged-chr4-59452700-3	chr4	59452587	59452787	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-14054.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	18.98	13.83	26.24	33.38	21.68	11.6	10.96	20.61	18.49	14.56	17.59	22.87
Merged-chr11-3172699-5	chr11	3172569	3172769	+	977.919983	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B1_Mus1|SINE|Alu	20794.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	17.77	15.34	13.69	14.88	24.14	10.03	20.59	5.13	5.7	11.05	8.04	8.77
Merged-chr5-92503601-3	chr5	92503517	92503717	+	977.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	2040.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	16.56	15.85	23.96	12.47	15.55	15.99	16.61	29.55	32.06	14.06	15.58	12.53
Merged-chr2-68978834-3	chr2	68978734	68978934	+	977.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	117393.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	25.04	14.59	54.19	21.32	18.41	23.52	20.26	29.07	15.54	22.09	22.61	11.9
Merged-chr5-17885466-3	chr5	17885390	17885590	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	3469.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	12.92	14.59	30.8	15.69	36.82	33.55	18.27	47.86	24.78	31.13	30.65	26.31
Merged-chr14-55677702-3	chr14	55677585	55677785	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177992, intron 8 of 9)	intron (NM_177992, intron 8 of 9)	4132.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	27.46	33.7	42.78	24.53	29.46	20.7	18.27	26.22	22.03	15.06	38.19	17.54
Merged-chr5-149274771-6	chr5	149274687	149274887	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308462, intron 2 of 3)	MT2B|LTR|ERVL	9783.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	12.92	11.32	8.56	19.71	11.05	7.84	19.93	11.61	23.8	14.56	18.59	12.84
Merged-chr2-127587285-3	chr2	127587209	127587409	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029963)	promoter-TSS (NM_029963)	-117.0	NM_029963	77721.0	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	19.38	24.15	29.66	22.12	21.68	26.03	40.52	18.39	15.74	21.09	12.06	16.92
Merged-chr1-171845193-3	chr1	171845102	171845302	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5505.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	22.61	15.09	12.55	16.89	25.77	22.89	18.6	20.86	30.49	44.19	41.71	22.24
Merged-chrX-106143182-3	chrX	106143067	106143267	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205820)	promoter-TSS (NM_205820)	-108.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	27.86	21.38	23.39	11.66	29.05	37.94	31.89	25.6	14.55	16.07	24.62	12.84
Merged-chr1-36162860-3	chr1	36162761	36162961	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198899, intron 29 of 40)	intron (NM_198899, intron 29 of 40)	-18548.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	12.92	12.07	21.11	25.74	42.55	47.98	46.17	75.7	44.25	36.65	66.83	29.13
Merged-chr17-84074199-3	chr17	84074110	84074310	+	977.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4450.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	11.71	16.85	33.09	16.89	18.0	23.83	16.28	26.24	21.83	19.58	19.09	18.8
Merged-chr14-45080018-3	chr14	45079917	45080117	+	977.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	91906.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	21.8	20.12	19.4	25.34	20.46	21.01	7.64	31.68	26.95	22.59	31.66	28.51
Merged-chr12-70457243-3	chr12	70457127	70457327	+	977.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028339, intron 3 of 7)	intron (NM_028339, intron 3 of 7)	4073.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	12.11	10.56	23.96	10.46	19.64	20.7	12.62	29.41	26.75	16.07	28.14	8.46
Merged-chr18-61400052-7	chr18	61399963	61400163	+	977.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	CpG	368.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	6.46	15.09	15.4	4.42	11.05	8.47	12.29	2.21	10.82	13.05	8.54	13.47
Merged-chr4-95212761-3	chr4	95212648	95212848	+	977.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-160526.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	16.96	11.82	22.82	26.95	44.59	24.15	18.6	34.96	22.62	12.55	14.57	22.87
Merged-chr5-77267245-3	chr5	77267137	77267337	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011263, intron 1 of 3)	intron (NM_011263, intron 1 of 3)	1743.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	21.8	26.41	19.4	16.09	27.82	36.37	28.9	27.7	40.32	45.69	30.65	13.78
Merged-chr2-131530746-3	chr2	131530643	131530843	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31542.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	12.92	11.57	21.68	16.49	15.14	17.56	13.95	18.56	20.85	22.59	26.13	17.23
Merged-chr4-147848436-3	chr4	147848337	147848537	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-19.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	50.07	39.99	20.54	39.82	49.09	58.64	27.24	25.4	57.24	64.77	45.22	20.99
Merged-chr15-7217211-3	chr15	7217109	7217309	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289496, intron 20 of 22)	intron (NM_001289496, intron 20 of 22)	76667.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	18.57	19.62	19.4	16.49	13.91	12.86	13.29	19.54	19.47	26.61	20.6	12.22
Merged-chr2-133443694-3	chr2	133443578	133443778	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108481.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	16.56	18.61	18.25	14.08	51.14	39.51	51.82	52.49	33.83	34.65	42.21	16.92
Merged-chr11-117775742-3	chr11	117775643	117775843	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_154387, exon 6 of 19)	non-coding (NR_154387, exon 6 of 19)	3905.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	26.25	15.85	24.53	13.27	31.91	27.59	23.92	36.81	24.39	5.52	19.6	26.0
Merged-chr10-39459008-3	chr10	39458911	39459111	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	89212.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	14.94	10.56	29.09	29.36	20.46	18.5	25.58	44.16	26.36	14.06	46.73	22.56
Merged-chr11-75092305-3	chr11	75092202	75092402	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-26311.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	50.47	21.88	53.62	51.48	39.68	35.43	34.88	68.3	29.9	13.56	34.67	33.83
Merged-chr15-27919709-3	chr15	27919614	27919814	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	106134.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	24.23	14.34	24.53	9.25	17.59	19.13	21.26	12.08	28.13	22.59	19.09	15.35
Merged-chr17-4922820-3	chr17	4922711	4922911	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72263.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	20.59	19.62	29.09	25.74	20.86	27.28	19.6	21.7	32.26	12.05	28.64	15.04
Merged-chr2-168978255-3	chr2	168978152	168978352	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040326)	promoter-TSS (NR_040326)	-17.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	21.4	5.03	8.56	18.9	23.32	13.48	19.6	31.93	19.47	17.07	29.14	18.8
Merged-chr13-109776294-3	chr13	109776165	109776365	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-127544.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	19.79	11.07	13.12	13.67	36.0	30.42	24.91	37.37	23.6	19.08	22.11	10.34
Merged-chr6-140811150-3	chr6	140811050	140811250	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	184265.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	10.9	12.07	13.12	13.27	18.82	17.56	19.6	33.84	17.51	16.07	31.66	24.12
Merged-chr5-76132237-3	chr5	76132142	76132342	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8031.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	46.44	32.7	46.78	44.64	8.18	17.56	17.61	16.68	15.14	5.52	20.1	10.96
Merged-chr15-98761311-3	chr15	98761202	98761402	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1690.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	15.75	18.61	21.68	20.51	31.5	21.95	15.61	19.96	20.46	13.56	17.08	20.36
Merged-chr16-49939081-3	chr16	49938986	49939186	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16744.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	21.8	28.93	21.11	17.7	15.96	59.89	26.91	10.54	40.71	60.75	41.71	11.9
Merged-chr12-85523281-3	chr12	85523159	85523359	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49369.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	44.82	19.12	21.11	11.26	55.64	46.41	39.86	29.38	27.93	39.67	23.62	13.78
Merged-chr5-74792511-2	chr5	74792419	74792619	+	977.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89616.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	14.94	13.83	9.13	20.51	47.46	37.32	55.14	47.83	2.75	2.01	5.53	4.7
Merged-chr5-114127619-3	chr5	114127508	114127708	+	977.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359940, exon 2 of 4)	exon (NM_001359940, exon 2 of 4)	610.0	NM_001359940	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	14.13	5.79	18.25	10.86	11.86	9.41	6.98	17.22	14.75	20.59	4.02	10.96
Merged-chr19-47918683-3	chr19	47918589	47918789	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	610.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	24.23	18.11	33.66	22.93	23.73	20.07	22.92	29.86	32.26	16.07	58.79	26.63
Merged-chr3-41563357-3	chr3	41563233	41563433	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172303)	promoter-TSS (NM_172303)	-50.0	NM_172303	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	21.0	19.62	19.4	39.01	20.86	16.31	8.97	19.85	24.59	15.57	28.14	15.98
Merged-chr8-81375320-3	chr8	81375216	81375416	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	32754.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	18.57	23.14	15.4	34.99	27.41	32.3	18.27	19.49	34.81	46.7	44.22	18.17
Merged-chr16-93683169-3	chr16	93683047	93683247	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-72.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	20.19	26.41	9.13	20.51	18.41	24.77	16.61	21.45	18.69	11.55	27.13	17.86
Merged-chr17-88442053-3	chr17	88441949	88442149	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	1345.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	12.52	13.58	17.68	18.1	28.64	19.13	18.27	19.93	27.73	20.59	29.65	15.66
Merged-chrX-12948325-3	chrX	12948230	12948430	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11457.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	12.52	15.34	15.4	15.69	17.59	27.28	10.3	21.14	13.57	42.68	29.14	15.04
Merged-chr12-32818358-3	chr12	32818255	32818455	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1980.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	16.96	19.87	18.83	16.89	19.64	23.2	23.92	15.98	20.65	31.13	23.62	24.43
Merged-chr19-59042881-3	chr19	59042780	59042980	+	977.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	33189.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	25.04	16.85	25.1	18.9	19.64	26.65	14.95	29.8	27.73	16.07	45.22	9.4
Merged-chr12-117379289-2	chr12	117379201	117379401	+	977.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42289.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	25.44	24.4	40.5	37.4	10.64	13.48	12.29	18.06	4.92	2.01	4.02	2.19
Merged-chr11-37043371-2	chr11	37043273	37043473	+	977.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99132.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	5.79	5.13	8.45	11.86	15.05	12.62	25.46	18.88	30.13	25.63	11.28
Merged-chr11-100343804-3	chr11	100343718	100343918	+	977.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	9411.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	16.15	12.32	18.83	14.08	19.64	19.76	14.28	12.28	22.23	30.63	24.62	8.77
Merged-chr2-91361430-3	chr2	91361338	91361538	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	83276.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	24.23	21.63	41.07	34.19	31.09	26.65	16.94	29.58	36.58	13.56	42.71	18.8
Merged-chr18-23874264-3	chr18	23874176	23874376	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70306.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	11.31	18.36	15.4	12.47	39.27	40.76	36.54	37.74	48.58	60.75	49.24	16.6
Merged-chr6-124682411-3	chr6	124682321	124682521	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	(A)n|Simple_repeat|Simple_repeat	19317.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	13.73	19.37	21.11	13.67	22.09	26.97	21.26	19.21	34.81	27.11	29.65	11.28
Merged-chr5-117357210-3	chr5	117357097	117357297	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-108.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	12.92	9.31	13.69	18.5	23.73	22.58	16.94	17.66	27.34	17.07	28.64	13.16
Merged-chr13-55024407-3	chr13	55024305	55024505	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3020.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	21.0	23.39	39.36	16.89	22.09	23.52	11.29	26.86	31.27	11.05	38.19	21.62
Merged-chr16-92019531-3	chr16	92019423	92019623	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-38799.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	17.36	14.09	12.55	13.67	23.73	12.23	5.65	15.79	28.72	15.06	15.58	15.04
Merged-chr17-35065040-3	chr17	35064925	35065125	+	977.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001462, exon 1 of 1)	non-coding (NR_001462, exon 1 of 1)	588.0	NR_001462	114763.0	Mm.491064	NR_001462		G6bos	G6b|NG31	G6b opposite strand	ncRNA	17.77	21.38	26.24	21.32	19.64	22.89	13.95	20.52	14.75	23.1	11.56	13.16
Merged-chr6-128843773-3	chr6	128843662	128843862	+	977.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17447.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	15.34	21.63	14.83	8.85	21.27	18.5	14.28	15.22	21.44	24.1	14.57	10.96
Merged-chr9-123840507-3	chr9	123840401	123840601	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110253, intron 3 of 17)	intron (NM_001110253, intron 3 of 17)	11160.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	16.56	25.4	19.97	24.94	18.82	82.78	28.23	26.5	23.6	28.12	23.62	11.28
Merged-chr16-14109874-3	chr16	14109762	14109962	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081154, exon 27 of 27)	3' UTR (NM_001081154, exon 27 of 27)	49412.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	22.61	18.86	28.52	36.2	22.09	24.77	12.62	23.83	22.82	13.05	23.11	11.59
Merged-chr14-56885447-3	chr14	56885354	56885554	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1149.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	21.0	26.41	15.97	18.5	24.96	27.91	15.94	12.67	28.91	30.63	17.59	23.49
Merged-chr12-83703363-3	chr12	83703269	83703469	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362271, intron 3 of 11)	L1ME2|LINE|L1	14806.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	10.5	24.15	40.5	17.7	12.68	27.91	24.25	25.49	21.83	22.09	24.62	20.36
Merged-chr15-27702402-3	chr15	27702295	27702495	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20853.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	16.15	10.31	18.83	15.69	29.46	13.8	20.93	26.47	17.9	15.06	18.59	13.16
Merged-chr12-110854986-2	chr12	110854887	110855087	+	977.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	4708.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	6.06	6.29	3.42	4.42	11.45	22.89	16.94	16.49	19.67	11.55	21.1	18.8
Merged-chr7-27577816-3	chr7	27577704	27577904	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175107, intron 8 of 9)	MTC|LTR|ERVL-MaLR	-13748.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	24.63	18.11	29.66	10.05	16.36	25.09	23.58	19.63	75.72	55.23	74.87	34.15
Merged-chr12-25091973-2	chr12	25091890	25092090	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	4102.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	14.94	19.37	5.7	16.09	16.36	18.81	6.64	7.71	2.75	9.04	5.02	6.58
Merged-chr16-27388415-3	chr16	27388319	27388519	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	-537.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	16.56	14.09	18.25	14.08	22.5	27.91	9.3	16.6	32.06	35.65	27.64	12.22
Merged-chr2-71662162-3	chr2	71662032	71662232	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-57285.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	14.13	24.9	29.09	27.35	28.64	35.12	25.24	31.37	37.37	26.11	39.7	25.37
Merged-chr5-95923015-1	chr5	95922915	95923115	+	977.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-33924.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	2.83	3.77	1.14	7.64	16.36	11.29	12.62	9.25	7.67	11.05	5.53	7.52
Merged-chr1-151264982-1	chr1	151264882	151265082	+	977.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79504.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.81	2.52	0.0	0.8	19.23	15.99	8.64	12.76	8.06	3.01	13.57	4.39
Merged-chr5-119058574-4	chr5	119058502	119058702	+	977.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49634.0	NR_040693	73477.0	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	2.02	10.82	3.99	14.48	4.91	6.27	5.65	6.81	10.03	9.54	12.56	5.95
Merged-chr4-135267137-3	chr4	135267043	135267243	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	5617.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	27.05	25.4	31.95	15.69	11.45	22.26	13.95	17.27	15.34	22.09	24.12	15.35
Merged-chr8-115420615-3	chr8	115420523	115420723	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	286271.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	13.33	12.07	15.97	4.02	6.14	15.05	5.65	7.15	15.14	16.57	18.59	8.46
Merged-chr16-10486950-3	chr16	10486848	10487048	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	-1230.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	29.88	40.24	23.96	16.49	14.73	53.62	13.62	19.35	51.73	37.16	27.13	12.53
Merged-chr8-56293430-3	chr8	56293343	56293543	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1109.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	12.11	5.28	14.83	15.69	16.36	11.6	25.58	44.13	16.92	20.08	26.63	19.42
Merged-chr5-139286192-3	chr5	139286082	139286282	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32685.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	14.54	13.33	17.11	10.86	20.05	6.9	10.63	15.25	36.39	31.63	32.66	18.48
Merged-chr4-135240509-3	chr4	135240396	135240596	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32264.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	16.15	12.07	24.53	4.02	31.91	31.04	10.3	19.35	27.14	23.1	28.64	12.53
Merged-chr7-15967484-3	chr7	15967359	15967559	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153068)	promoter-TSS (NM_153068)	76.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	16.96	19.87	7.42	12.47	13.09	19.13	19.27	8.19	15.14	20.59	19.09	13.78
Merged-chr7-111015106-3	chr7	111015010	111015210	+	977.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13841.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	18.57	12.07	17.11	8.04	13.5	19.13	8.3	12.34	28.52	20.59	29.14	17.23
Merged-chr10-128037025-3	chr10	128036916	128037116	+	977.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282976, intron 2 of 7)	intron (NM_001282976, intron 2 of 7)	1670.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	15.34	23.14	11.41	13.27	27.82	29.79	13.62	18.62	29.7	32.64	16.58	11.59
Merged-chr8-105254299-3	chr8	105254212	105254412	+	977.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271915, exon 1 of 1)	exon (NM_001271915, exon 1 of 1)	841.0	NM_001271915	97440.0	Mm.489600	NM_178879	ENSMUSG00000069920	B3gnt9	3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding	15.75	15.09	12.55	14.48	18.0	21.64	10.3	17.24	18.1	15.06	23.62	10.96
Merged-chr18-53249732-3	chr18	53249602	53249802	+	977.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4040.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	16.96	14.84	22.25	35.8	21.27	24.15	30.23	25.93	14.16	11.55	39.19	25.06
Merged-chr11-94226223-2	chr11	94226136	94226336	+	977.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14782.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	5.25	2.01	3.42	0.0	29.05	55.19	17.61	33.25	22.42	22.59	25.63	10.65
Merged-chr5-135907077-3	chr5	135906992	135907192	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	19173.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	16.15	11.32	26.24	20.91	25.36	44.21	39.53	47.78	16.92	13.05	23.11	24.12
Merged-chr15-39611086-3	chr15	39610981	39611181	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-48430.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	33.11	14.84	17.11	27.75	80.18	74.0	45.51	71.41	52.12	42.18	65.83	43.23
Merged-chr7-98084844-3	chr7	98084722	98084922	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 16 of 48)	intron (NM_008663, intron 16 of 48)	24426.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	21.0	9.56	7.42	22.93	27.41	14.74	24.58	20.72	11.6	18.58	22.11	10.96
Merged-chr14-65328142-3	chr14	65328041	65328241	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30535.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	21.8	10.06	4.56	20.11	18.0	15.05	14.95	13.07	16.72	16.07	23.62	10.02
Merged-chr3-121163632-1	chr3	121163532	121163732	+	977.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028456, intron 1 of 4)	intron (NM_028456, intron 1 of 4)	8063.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	3.23	1.51	3.42	0.4	4.91	3.45	2.66	3.64	30.49	16.07	22.11	11.28
Merged-chr16-38476432-3	chr16	38476353	38476553	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	17520.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	35.13	13.08	10.84	45.45	30.68	20.38	21.26	30.73	24.19	26.11	31.15	17.23
Merged-chr6-54048972-3	chr6	54048885	54049085	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	9053.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	27.86	22.13	27.38	24.13	28.64	28.54	8.97	28.74	29.9	18.58	34.17	18.8
Merged-chr10-96829043-1	chr10	96828943	96829143	+	977.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-206725.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	2.42	1.01	1.14	2.41	14.73	13.17	10.63	11.75	5.31	2.01	4.52	0.63
Merged-chr10-82974421-3	chr10	82974309	82974509	+	977.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11088.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	29.88	26.66	29.66	13.27	24.96	71.49	41.52	27.48	22.62	21.59	38.69	10.34
Merged-chr2-166900981-3	chr2	166900886	166901086	+	977.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5110.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	26.65	13.08	21.68	28.96	13.91	20.7	9.97	23.13	34.22	13.05	29.14	18.17
Merged-chr19-45308138-3	chr19	45308026	45308226	+	977.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55608.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	22.61	12.83	18.25	20.11	10.23	14.11	10.63	20.38	12.98	18.08	18.59	13.78
Merged-chr4-97839702-3	chr4	97839605	97839805	+	977.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	62079.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	13.73	6.79	13.12	21.32	6.95	13.8	13.62	13.6	14.55	6.53	24.12	10.96
Merged-chr12-76376878-3	chr12	76376762	76376962	+	977.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	6596.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	28.27	21.13	10.84	23.33	24.14	26.34	19.6	29.16	26.75	33.14	43.72	23.18
Merged-chr3-53459697-3	chr3	53459607	53459807	+	977.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	3551.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	10.5	19.87	11.98	18.1	23.32	20.7	26.24	19.96	18.29	19.08	23.62	14.1
Merged-chr10-80180146-3	chr10	80180014	80180214	+	977.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	632.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	25.44	43.01	13.12	11.26	15.14	66.16	30.56	7.93	53.5	48.2	32.16	9.08
Merged-chr11-80355015-3	chr11	80354894	80355094	+	977.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139228, exon 9 of 9)	3' UTR (NM_139228, exon 9 of 9)	23021.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	12.52	14.59	21.11	10.86	14.73	14.11	4.32	9.45	29.31	20.59	15.58	5.64
Merged-chr6-35380069-3	chr6	35379980	35380180	+	977.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49234.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	7.67	14.84	15.97	14.48	19.23	15.05	7.31	17.44	19.28	14.06	23.62	13.16
Merged-chr5-88675483-5	chr5	88675381	88675581	+	977.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098476)	promoter-TSS (NM_001098476)	99.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	21.8	20.37	11.41	18.9	11.05	15.99	20.59	19.15	18.88	15.06	27.64	19.74
Merged-chr11-120437589-3	chr11	120437482	120437682	+	977.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001195023, exon 1 of 17)	5' UTR (NM_001195023, exon 1 of 17)	118.0	NM_001195023	217365.0	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	21.0	32.45	22.25	14.08	26.59	27.28	13.62	15.45	15.14	34.14	13.57	22.87
Merged-chr12-110850404-5	chr12	110850328	110850528	+	977.1749880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001199785, exon 1 of 7)	exon (NM_001199785, exon 1 of 7)	149.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	14.94	11.07	11.98	24.13	23.32	14.11	15.28	21.5	16.52	25.11	18.09	19.11
Merged-chr11-75429197-3	chr11	75429101	75429301	+	977.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6578.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	15.34	18.11	15.4	25.34	15.96	22.26	8.3	25.12	17.7	24.6	22.11	15.66
Merged-chr5-110385489-3	chr5	110385400	110385600	+	977.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	1627.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	23.82	14.59	18.83	22.93	16.77	20.7	17.61	16.32	18.49	12.55	21.1	9.71
Merged-chr1-63113741-4	chr1	63113678	63113878	+	977.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	489.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	14.13	14.34	18.25	11.26	11.86	10.98	10.3	8.13	15.54	14.56	24.62	17.86
Merged-chr17-88496527-2	chr17	88496425	88496625	+	977.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33599.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	12.11	17.1	21.68	30.16	27.0	22.26	14.62	21.79	0.98	1.0	1.0	1.88
Merged-chr13-42301403-3	chr13	42301284	42301484	+	977.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-92.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	20.59	13.33	15.97	16.09	11.05	11.92	6.31	16.26	13.57	15.06	20.6	13.78
Merged-chr13-59562690-3	chr13	59562564	59562764	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5317.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	16.56	9.31	29.09	20.11	38.05	31.67	41.52	39.93	25.77	36.65	55.78	25.37
Merged-chr13-109239483-3	chr13	109239379	109239579	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-85265.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	14.94	19.12	9.13	20.51	24.55	16.62	18.6	26.16	32.26	21.59	56.78	13.47
Merged-chr11-114931269-3	chr11	114931162	114931362	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	MIRb|SINE|MIR	3124.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	29.48	19.37	41.07	36.6	45.0	32.3	16.61	26.83	28.32	18.08	42.71	25.37
Merged-chr19-21472581-3	chr19	21472465	21472665	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010266)	promoter-TSS (NM_010266)	96.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	21.4	13.83	12.55	19.71	24.96	30.42	30.89	35.1	21.64	19.08	32.66	15.35
Merged-chr2-21055642-3	chr2	21055518	21055718	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86744.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	16.56	3.52	14.26	28.56	42.96	42.33	54.81	63.34	60.38	34.65	73.86	37.91
Merged-chr12-69159714-3	chr12	69159631	69159831	+	977.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-545.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	21.4	25.66	28.52	29.36	23.32	20.07	16.61	19.21	33.24	35.15	18.09	26.94
Merged-chr5-99381164-3	chr5	99381060	99381260	+	977.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	RMER1B|Other|Other	-128233.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	21.0	15.34	13.69	32.18	29.46	42.02	15.61	28.74	30.49	39.16	41.2	16.29
Merged-chr17-84361160-3	chr17	84361060	84361260	+	977.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	105048.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	22.61	14.34	16.54	31.77	21.27	9.41	10.96	14.78	26.75	24.6	25.12	8.77
Merged-chr9-57071987-3	chr9	57071915	57072115	+	977.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045886)	promoter-TSS (NR_045886)	-25.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	14.13	11.07	13.12	6.84	29.05	22.89	10.3	15.7	31.27	19.58	32.66	15.66
Merged-chr19-11540357-3	chr19	11540256	11540456	+	977.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025658, intron 1 of 6)	intron (NM_025658, intron 1 of 6)	3507.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	16.56	24.4	34.8	25.34	29.46	16.31	7.97	17.3	23.6	18.08	37.69	16.6
Merged-chr5-130078282-3	chr5	130078188	130078388	+	977.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	-1082.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	21.0	11.32	26.24	14.88	15.14	18.5	15.28	20.36	16.92	5.02	25.63	12.22
Merged-chr9-119265570-3	chr9	119265464	119265664	+	977.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 8 of 18)	B4A|SINE|B4	-33872.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	21.0	14.34	22.82	21.72	11.86	20.38	20.26	27.53	15.93	39.16	26.63	10.96
Merged-chr17-28432229-3	chr17	28432145	28432345	+	977.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 3 of 10)	MER90a|LTR|ERV1	53904.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	15.75	14.84	21.11	23.33	12.27	13.48	11.29	34.57	27.14	19.58	30.65	19.74
Merged-chr5-33652399-5	chr5	33652309	33652509	+	977.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356983)	TTS (NM_001356983)	165.0	NM_001289725	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	71.47	52.07	75.3	58.72	51.14	86.55	55.8	52.26	79.46	126.03	113.56	63.91
Merged-chr12-3344919-3	chr12	3344814	3345014	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20218.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	24.63	32.7	17.11	16.09	23.32	55.5	17.27	26.3	48.19	50.21	55.27	16.6
Merged-chr4-12499748-2	chr4	12499636	12499836	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-327721.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.44	1.01	2.85	4.42	18.82	9.09	15.61	27.48	10.03	19.58	21.61	11.59
Merged-chr12-39996345-1	chr12	39996245	39996445	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41031.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	3.23	1.26	1.14	1.61	1.23	1.57	1.99	3.7	2.36	1.0	5.02	0.31
Merged-chr1-169442890-1	chr1	169442790	169442990	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	88574.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	15.34	10.06	14.83	18.5	0.0	0.31	1.99	2.58	3.74	1.0	2.01	3.76
Merged-chr19-37613147-3	chr19	37613056	37613256	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	62738.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	12.92	14.84	19.4	21.32	10.64	17.25	4.98	20.58	30.29	31.13	34.67	16.29
Merged-chr6-108618361-1	chr6	108618261	108618461	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	4806.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.62	0.25	1.14	1.21	5.73	1.25	5.98	8.61	2.75	0.5	1.51	0.63
Merged-chr17-7925401-3	chr17	7925296	7925496	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-604.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	24.23	21.63	8.56	2.01	24.55	46.72	12.62	9.03	27.93	16.57	19.09	10.96
Merged-chr6-39268821-2	chr6	39268710	39268910	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62037.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	3.23	6.79	15.97	6.03	20.86	21.95	16.61	27.5	10.82	8.03	17.59	12.22
Merged-chr5-65763535-3	chr5	65763430	65763630	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024917)	promoter-TSS (NM_001024917)	9.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	12.92	6.54	11.98	11.66	11.05	15.68	10.96	15.45	17.11	20.59	21.61	13.78
Merged-chr5-99215431-3	chr5	99215307	99215507	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37520.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	37.55	39.24	23.96	24.94	32.73	42.02	17.27	21.25	22.82	35.15	23.11	8.77
Merged-chr9-3403296-2	chr9	3403218	3403418	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-767.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	9.29	9.56	1.14	4.02	11.45	9.72	6.31	8.78	22.82	25.11	13.57	16.92
Merged-chr7-78846539-1	chr7	78846439	78846639	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029585, intron 1 of 4)	intron (NM_029585, intron 1 of 4)	672.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	1.62	3.52	5.13	2.82	13.91	0.94	7.64	7.82	6.69	6.53	5.53	5.33
Merged-chr12-117348866-1	chr12	117348766	117348966	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11854.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0.81	0.5	0.0	0.0	4.09	0.0	6.98	7.82	0.2	0.0	0.0	0.0
Merged-chr6-54039800-4	chr6	54039658	54039858	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-174.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	16.56	16.1	10.27	20.91	15.96	12.54	16.61	8.8	12.39	15.57	11.56	10.02
Merged-chr3-107332544-1	chr3	107332444	107332644	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	745.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	10.5	10.31	3.42	2.82	4.91	8.15	5.31	4.79	12.19	17.57	6.53	7.52
Merged-chr4-63215367-3	chr4	63215277	63215477	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025685)	promoter-TSS (NM_025685)	-35.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	21.8	11.82	17.11	17.7	17.59	15.68	8.97	17.24	15.14	16.07	19.6	15.04
Merged-chr1-144263531-1	chr1	144263431	144263631	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14427.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.44	1.26	3.99	2.82	2.05	4.39	4.65	7.63	5.31	1.51	9.04	6.58
Merged-chr1-186444999-2	chr1	186444879	186445079	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113702.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	5.25	10.31	16.54	8.85	13.09	12.23	15.28	17.36	1.18	2.01	0.0	0.0
Merged-chr6-146438289-1	chr6	146438189	146438389	+	977.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 2 of 56)	intron (NM_019923, intron 2 of 56)	63934.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	1.21	0.0	1.88	6.31	2.5	4.92	4.52	17.59	8.77
Merged-chr1-93818351-3	chr1	93818253	93818453	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-6887.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	12.11	11.07	15.4	16.49	29.05	28.54	21.26	26.36	21.44	19.58	27.13	18.17
Merged-chr10-95232740-3	chr10	95232642	95232842	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-86917.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	37.15	11.82	29.09	34.19	30.27	33.24	47.83	48.62	33.63	34.65	50.75	22.56
Merged-chr1-165680549-3	chr1	165680429	165680629	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	27565.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	35.94	46.28	27.95	16.89	56.46	84.35	40.86	48.17	49.37	66.28	37.18	11.59
Merged-chr10-25449568-3	chr10	25449479	25449679	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	41211.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	12.11	14.84	34.23	19.71	26.18	27.28	18.93	27.03	18.88	18.08	22.11	14.72
Merged-chr6-148986155-3	chr6	148986052	148986252	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39682.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	20.19	11.82	19.97	22.52	13.91	10.35	8.97	23.75	21.05	27.62	45.22	14.41
Merged-chrX-134600371-3	chrX	134600255	134600455	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313717)	promoter-TSS (NM_001313717)	650.0	NM_013463	11605.0	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	21.4	23.14	13.69	14.88	15.96	26.34	11.63	36.76	53.7	27.11	36.68	34.15
Merged-chr19-47937105-3	chr19	47936950	47937150	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-662.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	15.75	10.82	7.99	13.67	21.27	14.11	9.3	15.48	11.41	15.06	18.09	9.4
Merged-chr12-26436558-2	chr12	26436478	26436678	+	976.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19874.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	25.04	17.1	18.83	11.66	22.5	37.63	26.24	25.93	1.18	1.51	5.02	5.33
Merged-chr7-122305602-3	chr7	122305512	122305712	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	16487.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	28.67	15.85	33.66	32.58	9.41	15.68	12.62	26.78	11.21	3.01	18.09	10.34
Merged-chr5-30516539-3	chr5	30516437	30516637	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028483, intron 3 of 6)	intron (NM_028483, intron 3 of 6)	29299.0	NM_028483	73259.0	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	37.55	20.37	17.68	17.7	27.0	25.71	21.26	25.71	30.68	33.64	36.18	19.42
Merged-chr13-76579599-3	chr13	76579494	76579694	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	194633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	11.71	21.63	9.7	26.95	22.09	22.58	20.26	44.1	42.09	24.6	52.26	23.49
Merged-chr6-24989391-3	chr6	24989282	24989482	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33257.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	13.33	19.37	27.38	30.16	72.0	42.02	41.52	79.35	39.34	44.69	58.79	26.63
Merged-chr12-80069358-3	chr12	80069247	80069447	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43666.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	16.96	16.35	17.11	14.88	22.09	33.55	10.63	13.4	27.34	34.14	30.15	15.04
Merged-chr4-141618687-3	chr4	141618572	141618772	+	976.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-39.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	21.4	14.34	21.11	18.1	15.14	23.83	13.29	13.77	17.51	26.11	15.58	18.48
Merged-chr4-132976999-3	chr4	132976915	132977115	+	976.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2920.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	33.92	30.18	31.95	12.87	37.23	61.15	20.59	20.61	37.76	39.67	23.62	13.16
Merged-chr9-22054945-3	chr9	22054853	22055053	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2930.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	27.46	22.13	6.85	20.11	21.27	34.81	14.62	21.84	31.27	17.07	18.09	11.9
Merged-chr2-80617159-3	chr2	80617035	80617235	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024438)	promoter-TSS (NM_024438)	-79.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	29.88	15.85	13.12	15.28	24.55	26.34	16.94	25.63	15.54	19.58	38.19	14.1
Merged-chr6-123229828-3	chr6	123229722	123229922	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020001)	promoter-TSS (NM_020001)	-21.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	12.52	21.63	31.38	37.0	35.59	27.91	19.27	40.04	30.88	33.64	51.25	20.36
Merged-chr10-80098782-3	chr10	80098675	80098875	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	2412.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	25.84	33.2	47.35	28.15	33.55	38.88	11.29	31.18	45.24	26.11	63.31	26.0
Merged-chrX-7421162-3	chrX	7421051	7421251	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027925)	promoter-TSS (NR_027925)	-104.0	NR_027925	68355.0	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	25.44	14.84	19.97	22.52	24.14	19.13	6.64	22.04	27.34	28.12	27.13	19.74
Merged-chr8-25593663-3	chr8	25593569	25593769	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173012, intron 3 of 10)	intron (NM_173012, intron 3 of 10)	3818.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	22.21	14.09	21.68	16.09	17.59	17.25	14.28	26.47	19.87	12.55	27.13	16.92
Merged-chr2-5116464-3	chr2	5116373	5116573	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21303.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	17.36	14.59	26.81	16.49	18.41	22.58	14.28	19.85	33.24	33.14	35.68	12.84
Merged-chr8-116975936-3	chr8	116975835	116976035	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	2718.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	36.34	22.64	31.95	39.82	27.82	21.95	17.94	27.79	18.69	14.56	18.59	18.8
Merged-chr8-120509278-3	chr8	120509182	120509382	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	20416.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	15.75	23.64	14.26	9.25	29.46	32.61	18.6	24.39	24.59	16.57	18.59	10.65
Merged-chr6-42354357-4	chr6	42354226	42354426	+	976.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	4498.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	13.33	9.06	8.56	14.08	11.45	11.29	12.29	12.7	15.93	12.55	10.55	22.24
Merged-chr6-50545622-4	chr6	50545575	50545775	+	976.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20799.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	6.86	6.79	4.56	16.89	13.09	15.68	20.59	16.54	18.69	19.08	17.08	11.9
Merged-chr10-127320247-3	chr10	127320136	127320336	+	976.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1728.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	10.5	18.11	20.54	30.16	22.09	33.24	30.23	44.55	22.42	28.12	35.17	32.27
Merged-chr1-154794791-3	chr1	154794661	154794861	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-68841.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	15.75	11.32	20.54	25.34	18.82	22.89	15.94	22.01	22.03	25.11	16.58	8.77
Merged-chr17-48234698-3	chr17	48234574	48234774	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347399, intron 1 of 2)	intron (NM_001347399, intron 1 of 2)	1935.0	NM_021406	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	15.75	7.29	25.1	16.09	39.68	42.33	48.5	31.88	27.14	28.12	41.71	12.22
Merged-chr16-55951149-3	chr16	55951054	55951254	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15121.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	15.75	18.86	25.1	15.28	19.23	25.09	18.6	40.21	40.12	29.62	38.69	22.56
Merged-chr7-110772731-3	chr7	110772634	110772834	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009667, exon 1 of 15)	5' UTR (NM_009667, exon 1 of 15)	130.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	20.59	14.59	7.99	4.02	27.82	63.97	22.26	8.58	33.83	44.69	32.16	11.59
Merged-chr5-127621330-3	chr5	127621224	127621424	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3932.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	19.38	22.64	26.81	22.93	27.41	26.65	15.61	26.92	17.7	17.07	37.69	17.54
Merged-chrX-162735714-3	chrX	162735594	162735794	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153331, exon 2 of 2)	non-coding (NR_153331, exon 2 of 2)	919.0	NR_153331	102640117.0	Mm.183845	NR_153331	ENSMUSG00000086034	Gm15201	-	predicted gene 15201	ncRNA	14.94	8.8	14.26	14.88	12.68	13.8	20.59	21.03	20.85	16.57	20.1	19.42
Merged-chr18-32395805-3	chr18	32395696	32395896	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-17512.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	10.09	15.59	28.52	22.12	23.73	31.67	20.26	23.47	27.93	20.08	38.19	35.09
Merged-chr3-133542238-3	chr3	133542134	133542334	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	2156.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.86	12.58	15.4	15.69	11.05	24.15	7.31	17.19	29.9	12.55	40.7	15.04
Merged-chr15-73023104-3	chr15	73023003	73023203	+	976.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	32709.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	15.34	14.59	4.56	18.1	13.09	10.35	8.97	14.78	18.29	23.1	24.12	10.96
Merged-chr3-51560705-4	chr3	51560589	51560789	+	976.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_080793, exon 1 of 8)	5' UTR (NM_080793, exon 1 of 8)	134.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	11.31	12.83	13.12	17.29	20.05	18.81	16.61	16.35	33.44	15.06	22.61	24.43
Merged-chr7-99536273-4	chr7	99536144	99536344	+	976.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	758.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	14.13	19.37	3.99	13.27	29.05	31.36	26.57	21.59	25.18	16.57	25.12	12.53
Merged-chr5-113015607-3	chr5	113015546	113015746	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-108.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	15.34	20.88	17.68	14.48	18.0	21.01	7.64	16.04	25.37	21.59	16.08	4.7
Merged-chr13-40978843-3	chr13	40978737	40978937	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	MER2|DNA|TcMar-Tigger	-22173.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	15.34	13.33	32.52	14.48	35.18	26.03	22.59	52.43	28.91	29.62	16.58	15.98
Merged-chr13-92964373-3	chr13	92964254	92964454	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X7B_LINE|LINE|CR1	-108950.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	36.75	44.77	49.63	42.63	6.14	14.74	6.64	17.07	45.83	58.24	65.83	23.81
Merged-chr3-101597423-3	chr3	101597326	101597526	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7281.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	23.82	17.36	38.22	24.13	15.96	9.72	16.28	22.37	26.16	21.59	32.16	20.68
Merged-chr14-44988357-6	chr14	44988299	44988499	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008964, exon 1 of 2)	5' UTR (NM_008964, exon 1 of 2)	288.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	11.31	4.02	10.84	15.69	6.55	25.4	12.62	17.86	12.19	11.55	21.61	12.53
Merged-chr9-113742017-1	chr9	113741917	113742117	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001114347, intron 1 of 39)	CpG	544.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	13.73	10.56	6.85	16.89	8.18	12.54	8.64	7.57	8.46	15.57	13.06	6.58
Merged-chr4-123918009-3	chr4	123917865	123918065	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 1 of 6)	CpG	532.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	13.73	14.09	9.7	13.27	14.32	15.37	13.62	18.5	24.19	14.56	27.64	19.11
Merged-chr9-58560415-3	chr9	58560327	58560527	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19487.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	10.5	10.82	15.97	15.69	42.14	39.51	24.58	30.34	32.06	44.69	57.28	16.92
Merged-chr14-60990279-2	chr14	60990188	60990388	+	976.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	47699.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.02	0.75	0.57	5.63	13.09	5.02	14.62	28.49	22.82	35.15	63.31	27.25
Merged-chr2-73553600-3	chr2	73553485	73553685	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24098.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	13.33	9.06	17.68	11.26	24.14	16.31	16.61	13.6	18.29	18.58	6.53	13.47
Merged-chr11-83648422-3	chr11	83648338	83648538	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011337, intron 2 of 2)	intron (NM_011337, intron 2 of 2)	940.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	21.8	20.12	13.69	20.51	39.68	44.53	23.25	30.76	47.01	52.22	49.24	27.25
Merged-chr15-25862138-3	chr15	25862049	25862249	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	18851.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	25.04	10.31	19.4	18.5	34.77	24.77	25.24	50.5	32.65	19.58	31.66	27.57
Merged-chrX-129782057-3	chrX	129781959	129782159	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	intron (NM_172493, intron 1 of 26)	32317.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	17.77	18.61	22.25	19.31	27.41	22.89	27.57	21.62	17.9	20.08	16.58	11.9
Merged-chrX-60404072-5	chrX	60403978	60404178	+	976.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001798)	promoter-TSS (NM_001001798)	-73.0	NM_001037863	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	14.94	10.56	9.13	4.83	18.41	26.34	12.62	17.61	30.49	40.17	47.23	15.66
Merged-chr10-95843409-3	chr10	95843309	95843509	+	976.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97254.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	14.13	12.32	29.66	13.27	26.18	28.85	10.63	18.17	26.95	25.11	25.63	12.22
Merged-chr12-33050539-3	chr12	33050440	33050640	+	976.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 11 of 19)	intron (NM_001024478, intron 11 of 19)	42335.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	35.13	30.94	18.83	10.46	18.41	38.57	9.97	12.98	43.66	29.12	30.65	15.66
Merged-chrX-48106361-3	chrX	48106272	48106472	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2353.0	NM_001289729	170745.0	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	12.11	13.08	14.83	18.9	13.91	22.89	18.27	17.75	19.28	27.62	23.62	11.59
Merged-chr5-114596809-3	chr5	114596670	114596870	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28519.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	11.71	13.33	11.41	12.47	23.32	18.81	12.95	20.86	19.28	20.59	27.13	13.16
Merged-chr9-31262422-3	chr9	31262328	31262528	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-8973.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	14.94	22.39	33.66	40.22	29.46	33.55	33.55	25.01	30.88	25.11	43.72	27.57
Merged-chr10-100138701-3	chr10	100138549	100138749	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122828.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	17.77	13.83	20.54	28.56	14.73	14.74	21.59	15.95	15.74	9.54	31.15	6.89
Merged-chr17-83212663-3	chr17	83212568	83212768	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2615.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	13.33	11.57	19.97	6.84	25.77	14.11	18.93	33.87	18.88	18.58	26.13	16.92
Merged-chr7-30232878-3	chr7	30232795	30232995	+	976.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360649)	promoter-TSS (NM_001360649)	-698.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	18.17	6.79	8.56	16.89	20.05	13.17	18.6	17.92	16.13	13.05	22.61	14.41
Merged-chr2-165061805-3	chr2	165061710	165061910	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	MER113|DNA|hAT-Charlie	6174.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	15.34	16.1	25.1	13.67	16.77	23.52	17.94	20.52	28.32	17.07	22.61	19.42
Merged-chr8-82941981-1	chr8	82941881	82942081	+	976.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	78625.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.85	0.0	8.56	8.04	16.77	13.8	10.96	16.26	0.98	2.51	1.51	0.0
Merged-chrX-163897548-3	chrX	163897452	163897652	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11465.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	15.75	12.83	18.25	26.95	16.77	16.93	36.54	33.53	11.01	14.06	17.08	12.84
Merged-chr14-57399073-3	chr14	57398979	57399179	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-596.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	18.98	17.36	21.11	20.51	26.18	13.8	26.24	20.92	18.29	23.6	22.11	7.83
Merged-chr5-66140154-3	chr5	66140059	66140259	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	10819.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	17.77	21.63	28.52	9.65	23.73	18.19	15.61	17.8	15.34	17.57	20.6	13.78
Merged-chr14-120244877-3	chr14	120244782	120244982	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30787.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	13.73	12.32	21.68	18.5	18.82	17.56	21.92	29.92	20.06	9.04	26.13	14.41
Merged-chr9-44767328-2	chr9	44767229	44767429	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145985, intron 1 of 9)	CpG	479.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	12.52	9.31	12.55	14.48	18.41	12.86	13.62	19.6	14.16	23.6	22.61	21.3
Merged-chr1-67361007-1	chr1	67360907	67361107	+	976.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	237980.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	2.28	0.0	13.09	21.64	14.95	25.88	19.87	6.53	9.04	4.07
Merged-chr5-130205703-3	chr5	130205603	130205803	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14041.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	11.71	19.12	16.54	26.95	18.41	33.87	11.29	21.2	34.62	31.63	62.81	26.31
Merged-chr14-55728476-3	chr14	55728381	55728581	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6218.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	17.77	15.85	27.38	13.27	15.14	16.62	16.94	17.75	22.42	15.06	17.59	17.86
Merged-chr7-132672670-1	chr7	132672570	132672770	+	976.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	62027.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.46	4.28	5.7	3.22	11.45	14.74	16.61	19.4	0.98	2.51	6.03	2.19
Merged-chr3-109062605-3	chr3	109062514	109062714	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17885.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	18.57	18.11	19.97	17.7	16.77	18.5	14.28	18.9	18.49	26.61	23.62	11.28
Merged-chr19-53476997-2	chr19	53476901	53477101	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12205.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.85	9.81	18.25	4.02	11.45	13.17	22.92	20.47	2.16	3.51	3.01	1.88
Merged-chr14-45038206-3	chr14	45038095	45038295	+	976.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	50084.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	29.07	19.12	14.26	22.93	8.18	34.18	13.29	25.82	21.64	32.13	25.63	12.53
Merged-chr4-74252651-3	chr4	74252550	74252750	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 1 of 20)	intron (NM_001356561, intron 1 of 20)	771.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	13.33	10.82	6.85	14.48	9.0	17.25	18.6	16.01	14.75	16.07	24.12	19.42
Merged-chr10-25296774-3	chr10	25296654	25296854	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	CpG	2409.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	16.56	19.37	15.97	31.77	28.64	18.19	31.56	30.28	26.16	13.05	24.12	10.65
Merged-chr2-120565555-3	chr2	120565442	120565642	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1683.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	15.75	12.32	14.26	14.88	17.18	18.81	17.27	18.98	14.95	22.59	19.09	13.47
Merged-chr6-51556771-3	chr6	51556654	51556854	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	L1MB2|LINE|L1	11461.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	21.0	22.64	41.07	18.1	32.32	32.93	27.9	27.73	23.01	20.08	14.57	9.71
Merged-chr15-59435869-3	chr15	59435778	59435978	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	ID4_|SINE|ID	61680.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	14.94	13.08	28.52	26.55	23.32	24.46	11.63	34.12	27.93	32.64	36.18	10.02
Merged-chr10-68264073-3	chr10	68263982	68264182	+	976.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	14644.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	9.69	16.85	21.68	26.55	20.86	17.87	22.26	18.45	21.44	19.08	22.61	16.92
Merged-chr3-27615583-3	chr3	27615447	27615647	+	976.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-30552.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	8.88	10.56	9.7	16.89	11.86	20.7	14.95	9.45	26.95	18.08	28.64	16.92
Merged-chr10-60362357-3	chr10	60362260	60362460	+	976.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	15509.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	15.75	11.07	49.06	36.6	32.73	22.26	81.71	91.18	32.45	16.07	46.73	41.04
Merged-chr7-132656768-3	chr7	132656653	132656853	+	976.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	46110.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	18.17	14.59	16.54	33.38	15.55	36.06	17.94	30.11	22.03	19.08	31.15	14.1
Merged-chr3-126661188-3	chr3	126661071	126661271	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	64220.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	27.46	39.24	29.66	27.75	40.5	53.31	24.58	29.64	27.73	41.17	21.61	11.59
Merged-chr15-97784882-3	chr15	97784766	97784966	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	CpG	501.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	14.54	25.66	7.99	16.89	26.59	26.03	14.62	12.53	31.67	27.11	15.58	11.28
Merged-chr14-67945534-3	chr14	67945416	67945616	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11944.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	26.25	32.7	33.66	25.74	16.36	12.23	15.28	11.97	23.6	20.59	22.11	11.28
Merged-chr12-35711926-3	chr12	35711844	35712044	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16826.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	20.19	14.84	21.68	30.16	23.73	18.19	19.93	26.8	22.03	11.05	23.11	20.05
Merged-chr19-6118101-3	chr19	6118027	6118227	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	459.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	10.5	16.85	9.7	17.29	17.59	28.54	22.92	16.71	24.39	21.09	14.07	18.48
Merged-chr10-117856412-3	chr10	117856316	117856516	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10442.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	19.79	14.59	35.37	27.35	29.86	12.54	18.93	26.92	21.05	13.56	17.08	25.06
Merged-chr2-145371005-3	chr2	145370904	145371104	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	128393.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	19.38	10.56	23.39	19.31	15.55	30.42	16.94	28.82	22.42	14.56	31.66	17.23
Merged-chr4-142071080-3	chr4	142070994	142071194	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-13204.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	34.32	22.13	6.85	14.88	46.23	72.12	23.58	18.73	47.21	43.18	41.2	18.8
Merged-chr6-128913797-3	chr6	128913676	128913876	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	18069.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	27.05	26.91	25.1	24.94	22.91	54.25	28.23	22.46	47.8	44.69	47.74	11.9
Merged-chr16-90743853-3	chr16	90743753	90743953	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	5529.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	17.77	15.59	27.38	17.29	38.86	9.41	31.89	31.26	12.59	8.54	19.6	15.35
Merged-chr12-85647499-3	chr12	85647388	85647588	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39232.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	19.38	12.83	34.23	26.14	33.14	34.49	32.55	37.29	40.52	21.59	60.3	23.18
Merged-chr3-146781356-3	chr3	146781265	146781465	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164200)	promoter-TSS (NM_001164200)	51.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	15.75	12.58	15.97	16.09	19.23	16.31	17.61	23.16	15.74	13.05	14.57	8.77
Merged-chr4-117219033-3	chr4	117218949	117219149	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	32868.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	23.02	15.34	21.68	12.87	31.91	17.56	15.61	18.08	26.55	26.11	18.09	17.23
Merged-chrX-74245838-3	chrX	74245720	74245920	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290421, intron 1 of 46)	CpG	714.0	NM_010227	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	16.96	22.64	13.69	25.74	18.41	28.22	12.62	13.71	28.32	27.62	34.17	21.3
Merged-chr7-132811122-3	chr7	132810995	132811195	+	976.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	2101.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	16.15	26.16	21.11	22.12	35.59	14.74	5.65	23.86	27.14	32.13	44.72	27.57
Merged-chr11-3189074-5	chr11	3188955	3189155	+	976.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030207, exon 2 of 33)	5' UTR (NM_030207, exon 2 of 33)	4408.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	16.15	11.57	11.98	16.49	30.27	26.03	14.28	27.28	40.12	36.15	23.62	35.09
Merged-chr6-71440091-3	chr6	71439972	71440172	+	976.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024288, exon 1 of 9)	exon (NM_024288, exon 1 of 9)	565.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	12.52	17.86	22.82	14.88	19.64	18.5	16.61	15.5	12.98	18.58	10.55	15.66
Merged-chr7-19028272-2	chr7	19028174	19028374	+	976.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	3897.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	24.23	18.86	14.26	15.28	23.32	32.3	14.28	21.79	6.1	4.02	5.53	7.52
Merged-chr9-7272430-3	chr9	7272327	7272527	+	976.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008607)	promoter-TSS (NM_008607)	-87.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	16.15	14.09	34.23	30.97	37.64	23.83	28.23	44.36	16.52	13.56	30.65	6.89
Merged-chr10-61202068-3	chr10	61201959	61202159	+	976.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 19 of 21)	intron (NM_001081127, intron 19 of 21)	26797.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	27.86	40.75	36.51	16.09	17.59	41.08	9.97	13.09	45.63	39.67	40.7	23.81
Merged-chr12-85476022-6	chr12	85475976	85476176	+	976.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010234, exon 4 of 4)	exon (NM_010234, exon 4 of 4)	2186.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	71.47	53.83	9.7	16.89	24.14	48.92	20.26	12.2	36.98	72.3	40.7	10.34
Merged-chr11-120990483-3	chr11	120990467	120990667	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027874, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	14.13	11.07	14.83	19.71	11.86	14.11	5.98	12.42	20.06	31.63	40.2	12.22
Merged-chr2-160353941-3	chr2	160353837	160354037	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13128.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	23.82	23.9	27.38	24.53	30.68	27.91	11.63	23.8	19.67	15.06	18.09	15.35
Merged-chr3-81102770-1	chr3	81102670	81102870	+	976.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	66354.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	7.67	4.53	1.14	2.82	13.91	13.8	11.63	14.1	6.29	8.54	4.52	5.01
Merged-chr13-12273117-3	chr13	12273017	12273217	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033268, intron 18 of 20)	intron (NM_033268, intron 18 of 20)	-15004.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	12.11	12.07	9.13	6.03	18.0	12.23	7.31	17.22	19.67	26.61	17.08	14.41
Merged-chr12-3282695-3	chr12	3282591	3282791	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	27278.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	28.27	36.72	30.8	12.87	31.09	51.74	32.22	22.74	53.5	33.14	34.67	20.68
Merged-chr11-4980393-2	chr11	4980357	4980557	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	MLT1E3|LTR|ERVL-MaLR	-6367.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	13.73	13.33	7.99	2.82	11.86	14.11	4.32	5.92	7.87	6.53	2.01	5.64
Merged-chr15-55252609-2	chr15	55252500	55252700	+	976.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145470, exon 9 of 9)	3' UTR (NM_145470, exon 9 of 9)	-55150.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.85	3.27	21.68	5.63	20.46	13.8	15.61	15.9	31.08	27.62	26.63	17.54
Merged-chr19-40679831-3	chr19	40679725	40679925	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20055.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	11.71	12.32	27.95	6.44	26.18	37.32	13.95	16.68	28.72	23.6	27.13	14.41
Merged-chr13-23585118-3	chr13	23584995	23585195	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290530)	TTS (NM_001290530)	875.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	14.54	13.58	9.7	19.31	27.82	18.19	19.6	15.81	15.93	23.6	32.66	17.23
Merged-chr18-56433290-3	chr18	56433192	56433392	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	1160.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	8.08	16.6	17.11	17.7	15.14	13.8	13.62	17.52	21.64	18.58	26.63	14.41
Merged-chr6-38338154-3	chr6	38338063	38338263	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 2 of 8)	intron (NM_028864, intron 2 of 8)	16440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	21.8	29.93	25.1	14.48	15.96	18.81	8.3	16.37	30.88	18.08	31.15	9.08
Merged-chr10-21992178-3	chr10	21992105	21992305	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-18.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	12.11	10.82	30.8	14.88	20.46	29.79	31.22	28.43	23.6	22.09	30.65	20.99
Merged-chr2-128687348-3	chr2	128687255	128687455	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	40.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	28.67	23.64	26.81	14.48	20.46	31.98	10.63	25.23	29.5	34.65	21.61	15.04
Merged-chr3-145929775-3	chr3	145929679	145929879	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	5517.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	21.4	12.07	29.09	11.26	24.96	24.15	24.91	21.93	22.82	25.61	23.62	19.42
Merged-chr13-110545578-2	chr13	110545495	110545695	+	976.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150551.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	16.15	7.04	3.42	5.63	21.68	40.45	21.26	16.71	35.01	38.66	14.57	11.28
Merged-chr4-129855296-4	chr4	129855227	129855427	+	976.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34619.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	10.09	12.32	12.55	9.65	20.05	16.31	11.96	20.97	14.95	23.1	15.58	20.68
Merged-chr18-53268375-3	chr18	53268273	53268473	+	976.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	22711.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	16.96	8.8	34.8	37.4	32.73	24.46	47.5	45.53	43.27	24.1	64.32	31.33
Merged-chr8-11340498-3	chr8	11340399	11340599	+	976.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27673.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	37.55	16.85	31.95	9.65	39.27	46.1	38.86	70.63	28.72	39.67	34.17	21.93
Merged-chr6-120150701-3	chr6	120150618	120150818	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43105.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	27.05	9.31	15.4	14.08	64.23	54.56	67.1	71.52	28.32	46.19	36.68	32.58
Merged-chr15-97162474-3	chr15	97162353	97162553	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	4791.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	12.52	8.05	6.85	18.1	37.64	17.87	15.28	29.33	19.28	20.59	16.08	12.22
Merged-chr2-133512816-3	chr2	133512716	133512916	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39343.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	15.75	11.32	29.66	25.34	18.82	13.17	23.25	33.7	30.49	23.1	37.69	12.53
Merged-chr10-22000787-3	chr10	22000681	22000881	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161850)	TTS (NM_001161850)	6115.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	14.94	26.91	22.25	2.82	26.59	42.96	18.93	26.94	24.98	31.63	18.09	10.96
Merged-chr10-19105224-3	chr10	19105132	19105332	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36517.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	50.07	36.22	30.8	26.95	39.68	41.71	10.3	18.17	61.17	36.65	32.16	20.36
Merged-chr5-31758950-3	chr5	31758853	31759053	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	60903.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	23.42	16.1	33.09	26.95	24.55	32.3	11.29	29.78	40.52	16.57	35.68	19.11
Merged-chr17-40708972-3	chr17	40708877	40709077	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur1|LINE|L1	-18143.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	14.54	16.6	10.27	27.35	28.23	35.43	20.26	10.01	46.03	26.61	28.64	22.87
Merged-chr10-81268205-3	chr10	81268102	81268302	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	30.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	25.84	21.13	9.13	28.96	22.09	37.0	20.26	30.28	49.76	36.15	58.79	32.58
Merged-chr13-37833710-3	chr13	37833603	37833803	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	6310.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	35.53	28.93	82.72	37.4	56.05	60.21	19.93	60.73	32.65	14.06	30.15	26.63
Merged-chr14-63193712-4	chr14	63193607	63193807	+	976.042847	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201610)	promoter-TSS (NM_201610)	-182.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	6.06	11.57	7.42	22.52	18.41	8.47	16.61	12.67	18.88	17.07	9.04	18.17
Merged-chr5-147471428-3	chr5	147471320	147471520	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	41264.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	16.15	13.83	22.82	29.76	18.41	13.8	14.62	17.94	17.7	17.07	12.56	16.6
Merged-chr13-38028150-1	chr13	38028050	38028250	+	976.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027724, exon 3 of 13)	exon (NM_027724, exon 3 of 13)	8787.0	NM_027724	71213.0	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	0.0	0.0	2.28	3.22	0.41	0.0	0.66	0.34	28.91	14.56	41.71	32.89
Merged-chr16-93817064-2	chr16	93816949	93817149	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-15072.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	18.98	20.37	23.39	12.47	19.64	25.71	12.29	17.92	5.51	8.54	3.52	7.52
Merged-chr17-34250749-1	chr17	34250649	34250849	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11844.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.23	3.02	4.56	1.21	20.05	11.6	6.64	11.55	3.15	0.0	3.52	1.88
Merged-chr9-100450912-1	chr9	100450812	100451012	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	35561.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	8.08	2.52	0.0	3.22	2.45	1.57	11.63	8.21	3.15	2.51	5.02	2.51
Merged-chr5-117890879-2	chr5	117890786	117890986	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24047.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	8.88	3.27	5.13	5.23	7.77	11.92	10.96	10.01	16.52	12.55	9.55	7.83
Merged-chr1-58795452-3	chr1	58795339	58795539	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009812)	promoter-TSS (NM_009812)	65.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	19.79	17.86	19.97	24.53	24.14	25.71	24.25	23.13	16.72	21.59	15.58	12.84
Merged-chr7-55928851-1	chr7	55928751	55928951	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011370, intron 30 of 30)	MLT1E1|LTR|ERVL-MaLR	33642.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	2.42	3.02	4.56	6.44	2.45	3.45	6.31	9.08	3.74	1.0	10.55	4.7
Merged-chr17-51813365-3	chr17	51813278	51813478	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163632, intron 1 of 10)	CpG	-1194.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	18.57	16.85	19.4	12.87	16.77	15.37	12.29	14.47	16.33	8.54	25.63	11.59
Merged-chr14-76402413-1	chr14	76402313	76402513	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12548.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.63	6.29	8.56	5.63	10.64	10.35	2.99	9.59	7.47	1.51	5.53	5.64
Merged-chr18-12232820-1	chr18	12232720	12232920	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	RMER1C|Other|Other	3566.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	1.21	1.26	0.0	1.61	11.05	3.45	2.99	8.97	1.57	1.0	0.5	4.7
Merged-chr6-87750474-3	chr6	87750417	87750617	+	975.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 3 of 7)	intron (NM_001159697, intron 3 of 7)	19648.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	13.73	11.57	25.1	11.66	11.45	15.99	21.59	32.44	39.14	8.54	21.61	20.68
Merged-chr13-13524312-3	chr13	13524195	13524395	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66114.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	18.17	33.7	25.1	12.47	23.73	26.97	15.94	10.63	61.76	28.12	40.2	28.51
Merged-chr1-46905882-3	chr1	46905785	46905985	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	19891.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	13.33	15.59	33.09	15.28	13.09	19.13	9.63	37.12	28.52	25.61	24.12	12.53
Merged-chr5-21200216-3	chr5	21200109	21200309	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	13942.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	19.38	5.79	26.24	12.07	31.09	30.73	14.28	20.89	25.96	20.59	20.1	10.02
Merged-chr13-10107026-3	chr13	10106904	10107104	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	253799.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	5.25	8.05	16.54	15.28	30.27	19.76	18.93	35.44	17.31	23.6	57.28	20.05
Merged-chr5-91961566-3	chr5	91961451	91961651	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1005.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	40.38	39.49	33.66	12.87	57.27	40.14	24.25	30.34	62.15	63.27	58.29	30.39
Merged-chr19-24990618-3	chr19	24990510	24990710	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8919.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	31.9	24.65	23.96	34.59	27.82	11.92	11.96	20.3	20.06	33.14	30.65	18.17
Merged-chr2-18989033-3	chr2	18988938	18989138	+	975.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	9083.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	40.38	33.45	36.51	56.31	48.68	31.36	28.9	56.02	34.62	14.56	61.81	26.0
Merged-chr12-113146879-2	chr12	113146769	113146969	+	975.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	23.02	13.08	14.26	12.47	58.09	57.07	20.26	30.11	10.42	3.01	7.03	2.51
Merged-chr14-19971043-3	chr14	19970950	19971150	+	975.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5643.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	35.13	26.41	32.52	27.35	41.73	15.68	11.96	35.19	29.5	26.11	37.18	15.35
Merged-chr5-148496190-3	chr5	148496095	148496295	+	975.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55478.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	12.92	16.1	15.4	10.86	23.32	37.63	22.26	24.62	37.96	35.65	64.32	23.81
Merged-chr13-44420032-3	chr13	44419941	44420141	+	975.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19686.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	23.02	22.64	25.1	15.28	16.77	33.24	17.27	25.54	28.52	36.65	32.66	24.12
Merged-chr9-60743387-3	chr9	60743299	60743499	+	975.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	30278.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	15.75	18.36	15.97	21.72	24.14	26.65	23.25	30.06	24.78	26.11	22.61	11.28
Merged-chr11-119228530-3	chr11	119228437	119228637	+	975.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	-35.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	22.21	15.09	13.69	10.05	14.73	18.5	7.97	12.03	25.96	16.07	27.13	13.78
Merged-chr17-5520149-2	chr17	5520058	5520258	+	975.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	27558.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.67	8.3	3.99	2.41	12.68	11.92	3.99	13.85	17.11	9.04	17.08	6.89
Merged-chr5-117147384-1	chr5	117147284	117147484	+	975.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	13796.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.27	2.52	9.13	8.04	18.82	15.68	9.97	18.17	3.34	1.0	1.0	3.76
Merged-chr18-25881895-3	chr18	25881791	25881991	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127734.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	13.33	14.59	23.39	24.13	19.64	22.58	32.55	44.86	34.22	26.11	45.22	18.17
Merged-chr6-108371708-3	chr6	108371613	108371813	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 13 of 61)	Lx8|LINE|L1	-118030.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	18.57	12.32	19.97	6.03	29.05	16.93	15.28	25.51	21.05	22.09	12.06	15.98
Merged-chr16-36067939-3	chr16	36067838	36068038	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	3577.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	23.82	8.55	12.55	15.69	27.0	21.01	8.3	13.91	28.13	25.11	26.13	24.43
Merged-chr11-67966451-3	chr11	67966354	67966554	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	-4.0	NM_001361352	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	26.25	21.13	22.25	15.28	13.5	16.62	14.28	19.6	32.85	24.1	18.59	18.48
Merged-chr1-154104378-3	chr1	154104285	154104485	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-96802.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	8.08	12.32	14.26	20.91	20.46	11.6	12.62	21.03	19.87	7.03	16.58	11.28
Merged-chr5-8349714-3	chr5	8349616	8349816	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	18444.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	19.38	18.86	34.8	29.36	16.36	24.77	24.91	29.41	30.09	27.11	29.65	10.96
Merged-chr5-103744756-3	chr5	103744661	103744861	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9401.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	16.96	12.58	9.7	17.29	24.14	14.11	4.65	16.46	24.39	18.08	28.64	14.1
Merged-chr6-108401765-3	chr6	108401678	108401878	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 32 of 61)	intron (NM_010585, intron 32 of 61)	-87965.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	23.02	41.0	28.52	20.91	17.18	38.88	22.26	22.26	18.49	15.57	16.58	9.71
Merged-chr8-127982200-3	chr8	127982165	127982365	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	295960.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	10.9	19.37	15.4	16.09	9.0	7.21	11.63	12.53	10.03	15.57	16.58	19.42
Merged-chr8-41039666-3	chr8	41039559	41039759	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	2272.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	15.34	14.09	14.26	43.44	31.5	19.13	24.25	39.22	36.78	20.08	43.21	17.54
Merged-chr14-105898930-3	chr14	105898816	105899016	+	975.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2097.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	23.82	26.16	40.5	26.95	22.91	26.97	27.57	32.86	21.05	7.53	25.12	16.92
Merged-chr14-70549430-3	chr14	70549328	70549528	+	975.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_180588)	TTS (NM_180588)	4177.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	19.38	13.83	9.7	16.09	26.18	20.38	9.63	20.05	23.01	19.08	24.62	15.66
Merged-chr15-96712219-3	chr15	96712100	96712300	+	975.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12472.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	14.94	18.11	23.96	14.88	19.23	24.77	13.62	22.96	32.65	8.03	39.19	17.54
Merged-chr8-46869527-3	chr8	46869428	46869628	+	975.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117359.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	11.31	14.84	34.23	18.5	42.96	49.23	32.88	28.37	24.59	29.12	30.15	12.84
Merged-chr18-67736980-3	chr18	67736883	67737083	+	975.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12362.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	5.65	11.07	8.56	18.1	15.96	12.54	9.63	19.32	14.55	21.59	40.7	17.54
Merged-chr3-123481461-2	chr3	123481354	123481554	+	975.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008939, intron 4 of 10)	intron (NM_008939, intron 4 of 10)	26612.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	8.48	4.53	13.12	8.04	28.23	10.98	12.29	19.23	16.92	23.1	29.14	13.16
Merged-chr12-54402305-3	chr12	54402203	54402403	+	975.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10985.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	4.04	5.53	23.96	15.28	21.68	15.05	6.31	18.34	22.62	10.04	32.66	10.96
Merged-chr17-71301036-3	chr17	71300938	71301138	+	975.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9973.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	11.71	12.58	21.68	2.01	20.46	21.64	19.27	15.03	11.41	18.08	20.1	10.96
Merged-chr1-95591282-3	chr1	95591173	95591373	+	975.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	76321.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	17.77	8.8	19.4	18.1	20.05	16.31	19.93	27.76	25.96	9.54	27.13	15.35
Merged-chr5-72184610-2	chr5	72184547	72184747	+	975.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16458.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	18.57	11.82	14.26	19.31	4.91	10.66	13.29	13.37	13.96	21.09	11.05	10.65
Merged-chr9-35039402-3	chr9	35039279	35039479	+	975.61908	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77349.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.67	8.8	14.26	17.29	15.55	10.98	11.29	9.14	12.39	20.59	19.6	10.96
Merged-chr11-62550514-3	chr11	62550427	62550627	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-644.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	14.54	13.08	18.25	20.11	21.27	26.03	14.62	19.96	24.59	21.59	28.64	20.99
Merged-chr3-135440296-3	chr3	135440194	135440394	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1168.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	14.13	10.31	29.66	14.08	22.5	23.83	22.92	23.61	31.67	31.63	35.68	31.01
Merged-chr5-122669299-3	chr5	122669197	122669397	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038845, intron 8 of 12)	B4A|SINE|B4	-13300.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	17.77	11.82	23.96	20.11	35.18	52.37	32.22	24.81	21.83	22.09	15.07	12.53
Merged-chr14-30671632-3	chr14	30671514	30671714	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17239.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	15.75	5.79	26.81	16.89	10.64	16.62	6.98	19.99	14.16	10.54	17.59	16.29
Merged-chr19-42080158-3	chr19	42080080	42080280	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198108, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	6190.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	17.77	9.56	15.97	15.28	39.27	36.37	42.19	37.12	20.06	25.11	19.09	25.37
Merged-chr7-100952211-3	chr7	100952095	100952295	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	12171.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	13.73	16.1	15.4	6.84	14.73	12.86	11.96	17.22	18.1	5.02	25.63	6.27
Merged-chr5-72647762-3	chr5	72647662	72647862	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081205)	promoter-TSS (NM_001081205)	-34.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	14.94	14.59	23.39	13.27	40.5	33.87	32.55	51.53	31.08	22.09	52.26	29.13
Merged-chr3-108726571-3	chr3	108726478	108726678	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4279.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	5.65	16.35	27.38	12.07	16.36	21.32	14.95	14.3	16.92	18.58	11.05	18.48
Merged-chr14-31593217-3	chr14	31593104	31593304	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15821.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	10.9	13.33	39.36	24.94	23.32	21.64	16.94	26.38	21.83	22.59	30.65	29.13
Merged-chr4-127151308-3	chr4	127151201	127151401	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17903.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	18.57	26.66	45.07	30.16	42.55	20.07	7.64	27.06	36.78	25.61	27.64	17.86
Merged-chrX-74003829-3	chrX	74003732	74003932	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19766.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	9.29	20.12	18.25	29.76	18.0	20.38	4.65	23.72	29.31	11.05	34.67	32.58
Merged-chr16-36720398-3	chr16	36720308	36720508	+	975.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	26430.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	12.11	15.59	14.83	18.9	20.05	23.52	24.58	24.14	19.67	18.58	37.69	16.6
Merged-chr5-113009648-3	chr5	113009520	113009720	+	975.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	5918.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	21.8	24.4	15.4	9.65	24.14	39.2	21.26	18.98	24.19	34.65	25.12	6.58
Merged-chr9-66831140-3	chr9	66831045	66831245	+	975.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3561.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	27.86	28.17	38.22	19.31	27.41	33.24	27.57	34.63	22.42	15.57	16.08	16.29
Merged-chr19-40895198-2	chr19	40895113	40895313	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106167)	TTS (NR_106167)	508.0	NM_028319	72672.0	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	17.77	15.09	15.4	14.48	10.23	5.64	10.63	4.63	10.03	15.57	6.03	16.92
Merged-chr17-34092797-3	chr17	34092694	34092894	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	415.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	28.67	36.72	38.22	8.04	22.09	32.3	13.95	10.96	41.89	38.66	30.65	13.16
Merged-chr1-170589826-3	chr1	170589746	170589946	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109985)	promoter-TSS (NM_001109985)	3.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	15.75	15.85	13.12	18.9	35.59	40.45	27.9	28.54	23.41	40.17	46.23	12.53
Merged-chr1-192932053-3	chr1	192931942	192932142	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301370, intron 5 of 8)	intron (NM_001301370, intron 5 of 8)	-76290.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	5.25	10.56	27.38	20.11	15.96	12.54	7.64	26.58	36.19	31.13	32.66	19.74
Merged-chr2-144004922-3	chr2	144004800	144005000	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6363.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	39.98	40.75	31.38	26.14	15.55	22.89	16.28	19.21	22.23	27.62	25.12	10.02
Merged-chr1-170371468-3	chr1	170371365	170371565	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	62604.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	9.69	9.06	2.85	1.61	12.27	12.86	15.28	16.18	21.24	18.08	21.61	11.28
Merged-chr13-12121943-3	chr13	12121831	12122031	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-14986.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	14.54	13.58	34.23	44.24	23.32	31.98	35.54	53.13	41.5	34.65	71.35	39.78
Merged-chr2-92438112-3	chr2	92437990	92438190	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4021.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	17.36	9.56	11.41	6.44	16.36	21.32	9.63	19.18	20.26	22.59	17.59	10.96
Merged-chr11-6490280-3	chr11	6490186	6490386	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14210.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	16.15	13.58	18.83	16.09	21.27	22.26	16.94	20.02	23.41	19.58	28.64	13.16
Merged-chrX-7169018-3	chrX	7168942	7169142	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016691, intron 6 of 11)	intron (NM_016691, intron 6 of 11)	19672.0	NM_016691	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	17.77	18.61	28.52	34.19	26.18	16.62	21.92	28.79	23.8	23.6	15.07	8.46
Merged-chr13-69526507-3	chr13	69526322	69526522	+	975.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	7442.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	18.17	15.09	9.13	4.83	9.82	18.19	7.31	14.86	6.49	18.08	10.55	11.9
Merged-chr8-46849056-3	chr8	46848914	46849114	+	975.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109269.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	14.54	15.09	8.56	25.34	18.41	15.05	9.97	18.42	16.13	13.56	28.14	13.78
Merged-chr11-54161027-3	chr11	54160926	54161126	+	975.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	52262.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	21.4	13.33	33.09	19.71	33.55	31.98	16.94	31.35	35.21	29.62	36.18	18.48
Merged-chr3-66981260-3	chr3	66981166	66981366	+	975.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-125.0	NM_001302359	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	8.08	16.85	17.11	7.24	32.73	11.29	18.27	21.39	20.46	9.04	21.1	13.16
Merged-chr5-24597537-3	chr5	24597437	24597637	+	975.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	4465.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	15.75	17.86	10.84	16.49	21.68	29.16	9.97	23.36	29.31	24.1	38.69	25.37
Merged-chr7-88252205-2	chr7	88252084	88252284	+	975.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-25901.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	13.73	10.31	4.56	16.49	18.0	21.01	13.95	15.31	15.34	7.03	18.09	4.07
Merged-chr17-32966204-2	chr17	32966094	32966294	+	975.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	363.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	12.92	12.83	8.56	15.69	19.23	8.47	10.96	22.32	16.13	17.07	21.61	11.59
Merged-chr17-51220710-3	chr17	51220670	51220870	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41418.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.06	5.03	14.26	11.66	9.41	2.2	2.66	7.57	14.95	18.08	13.06	7.52
Merged-chr15-101381950-1	chr15	101381850	101382050	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11825.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	4.44	2.52	0.0	2.01	10.23	18.19	11.29	6.76	2.56	2.01	7.03	3.45
Merged-chr6-97855772-5	chr6	97855665	97855865	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	48707.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	9.29	9.56	12.55	13.27	15.55	18.5	17.61	12.67	11.21	10.54	11.56	15.66
Merged-chr19-32328329-1	chr19	32328229	32328429	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	20987.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.25	2.52	6.85	3.62	15.14	13.8	10.63	22.49	5.11	7.53	13.06	4.39
Merged-chr7-98805577-3	chr7	98805479	98805679	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-29533.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	20.19	11.07	16.54	17.7	20.86	15.68	9.97	13.99	34.03	26.61	19.09	15.35
Merged-chr13-37718530-3	chr13	37718415	37718615	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-107523.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	16.56	20.63	30.8	20.51	20.46	26.03	12.95	15.5	19.67	11.55	19.09	19.42
Merged-chr1-95449431-1	chr1	95449331	95449531	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135803.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	6.06	3.02	7.99	6.84	15.14	13.17	10.96	13.26	5.9	8.54	16.58	4.39
Merged-chr5-125305416-1	chr5	125305316	125305516	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	35678.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.85	5.53	5.7	5.63	18.41	3.14	8.64	12.62	7.28	5.02	6.03	13.47
Merged-chr9-118665676-2	chr9	118665581	118665781	+	975.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46011.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.25	7.29	11.98	8.85	22.09	15.37	7.97	11.19	20.65	21.59	21.61	11.9
Merged-chr2-152398107-4	chr2	152397919	152398119	+	975.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	27.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	7.67	13.83	9.13	14.48	16.36	24.46	20.93	10.35	10.62	13.56	9.55	10.34
Merged-chr7-75576391-3	chr7	75576291	75576491	+	975.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	120857.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	32.71	19.62	19.97	37.0	39.68	26.65	25.24	21.62	27.73	17.57	27.13	15.04
Merged-chr3-146118229-3	chr3	146118143	146118343	+	975.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3548.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	25.44	14.09	21.11	20.51	10.64	11.6	14.95	27.14	30.88	25.61	24.62	21.3
Merged-chr7-110557201-3	chr7	110557100	110557300	+	975.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	57720.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	16.96	12.07	20.54	12.47	21.27	13.17	4.32	7.46	21.24	12.05	8.54	6.89
Merged-chr2-166719514-3	chr2	166719403	166719603	+	975.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-5671.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	28.27	40.75	46.21	16.09	34.77	56.13	23.25	21.59	64.32	63.77	61.3	29.13
Merged-chr11-103346855-3	chr11	103346764	103346964	+	975.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045346, exon 3 of 4)	non-coding (NR_045346, exon 3 of 4)	2111.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	23.02	21.38	16.54	17.29	11.05	21.95	19.93	20.22	19.47	16.07	21.61	11.28
Merged-chr13-5420022-1	chr13	5419922	5420122	+	975.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	438070.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.42	5.03	7.99	10.86	18.82	6.59	14.95	16.23	5.7	8.03	13.57	4.39
Merged-chr3-135628590-3	chr3	135628488	135628688	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62959.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	14.13	8.05	17.68	17.29	16.36	16.31	13.29	20.41	20.65	13.05	32.66	22.87
Merged-chr6-145865572-3	chr6	145865485	145865685	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-165.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	21.0	18.61	38.22	24.13	66.68	61.15	39.2	79.91	18.88	14.56	28.14	18.17
Merged-chr19-10818724-3	chr19	10818624	10818824	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	11334.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	12.92	14.84	17.68	15.28	14.32	20.07	6.31	15.0	20.06	22.09	23.62	10.02
Merged-chr5-66105567-3	chr5	66105469	66105669	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7390.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	37.96	14.34	27.95	22.52	30.68	11.6	17.27	29.92	27.93	18.58	26.63	11.28
Merged-chr9-25539513-3	chr9	25539441	25539641	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	57944.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	18.98	3.77	21.11	10.86	11.05	13.17	32.88	27.31	22.42	12.55	28.14	14.1
Merged-chr13-51398855-3	chr13	51398749	51398949	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-9769.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	27.46	14.59	25.67	27.35	32.32	21.01	19.27	29.75	39.53	25.11	35.68	10.96
Merged-chr15-86272931-3	chr15	86272839	86273039	+	975.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	L1M4c|LINE|L1	-4736.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	19.38	13.33	19.97	21.72	25.36	7.53	13.95	28.4	21.24	22.09	24.12	11.9
Merged-chr13-100108063-3	chr13	100107951	100108151	+	975.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011353)	promoter-TSS (NM_011353)	32.0	NM_011353	20365.0	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	10.09	16.1	18.83	20.11	28.23	22.58	14.95	18.06	18.88	24.6	24.12	10.34
Merged-chr3-59264192-3	chr3	59264105	59264305	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 35 of 43)	intron (NM_177855, intron 35 of 43)	-1220.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	29.48	20.37	22.25	16.49	26.59	21.01	5.31	15.56	29.7	32.13	34.17	16.6
Merged-chr6-51525314-3	chr6	51525212	51525412	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	1052.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	18.57	16.35	24.53	23.73	29.05	24.15	17.94	28.99	16.72	18.58	15.07	9.71
Merged-chr12-102366233-3	chr12	102366126	102366326	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73587.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	16.56	6.54	22.25	16.09	33.14	23.52	41.52	52.85	27.54	12.05	26.63	15.98
Merged-chr2-101679340-3	chr2	101679244	101679444	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303273, intron 1 of 6)	intron (NM_001303273, intron 1 of 6)	924.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	21.8	27.17	22.25	8.45	17.18	28.85	10.3	7.49	26.95	22.59	34.67	7.83
Merged-chr2-126675098-5	chr2	126675000	126675200	+	975.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271470, intron 1 of 8)	CpG	252.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	14.94	16.6	11.41	13.27	18.0	21.64	29.56	16.46	32.06	32.13	25.63	26.94
Merged-chr8-71381517-3	chr8	71381416	71381616	+	975.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010150, exon 1 of 4)	5' UTR (NM_010150, exon 1 of 4)	436.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	23.42	21.38	19.4	14.48	33.96	35.75	17.27	17.24	33.04	28.62	46.23	35.4
Merged-chr15-103393761-3	chr15	103393656	103393856	+	975.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26965.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	13.33	26.91	23.39	5.23	15.55	37.32	18.93	17.92	22.82	36.65	15.07	25.37
Merged-chr2-174110520-8	chr2	174110504	174110704	+	975.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213733, intron 1 of 11)	CpG	253.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	10.09	4.02	3.99	5.23	14.73	11.92	19.27	16.18	14.55	24.1	25.12	11.59
Merged-chr15-102192571-3	chr15	102192466	102192666	+	975.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359128, intron 3 of 15)	L2|LINE|L2	-3523.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	16.96	14.59	17.11	17.7	10.64	24.46	10.3	21.84	14.36	20.59	22.11	11.28
Merged-chr2-4501837-3	chr2	4501737	4501937	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	HAL1|LINE|L1	-57917.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	31.5	14.34	11.98	21.32	29.86	30.73	30.89	30.06	40.12	35.65	56.78	30.07
Merged-chr8-122980077-3	chr8	122979982	122980182	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	62202.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	24.63	26.66	12.55	29.36	32.32	38.88	17.61	26.61	22.82	25.11	27.64	18.17
Merged-chr1-64367791-3	chr1	64367682	64367882	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165022.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	21.8	12.32	33.66	62.74	33.55	26.03	38.2	58.12	38.16	14.56	43.72	29.45
Merged-chr17-88063065-3	chr17	88062972	88063172	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	1860.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	30.69	12.32	38.79	5.63	29.86	23.83	13.29	22.79	30.68	18.58	19.09	8.77
Merged-chr5-90891239-4	chr5	90891093	90891293	+	975.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-52.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	92.87	42.26	43.35	24.94	77.73	124.49	42.19	20.61	46.62	56.24	35.17	9.08
Merged-chr2-71529704-2	chr2	71529593	71529793	+	975.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002854)	TTS (NR_002854)	248.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	4.44	6.79	6.28	6.44	17.18	26.34	13.29	22.29	16.33	15.57	31.15	9.71
Merged-chrX-71555888-3	chrX	71555783	71555983	+	975.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293623)	promoter-TSS (NM_001293623)	-34.0	NM_001293624	15354.0	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	12.92	16.85	24.53	15.69	22.91	25.09	24.58	30.81	15.93	10.54	37.18	13.16
Merged-chr2-69861156-3	chr2	69861053	69861253	+	975.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	-409.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	20.59	13.08	13.69	20.91	22.09	10.66	24.91	24.11	20.06	6.53	26.63	22.56
Merged-chr15-11972052-3	chr15	11971947	11972147	+	975.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4985.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	12.52	18.11	17.68	12.47	16.77	22.58	23.25	27.42	23.21	17.57	25.63	12.22
Merged-chr18-4336473-5	chr18	4336345	4336545	+	975.042419	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16508.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	12.52	7.55	10.84	15.69	12.68	22.89	9.63	11.78	13.37	12.55	12.56	10.02
Merged-chr2-148585899-3	chr2	148585809	148586009	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-86706.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	8.88	10.56	11.41	14.08	17.59	20.38	13.62	15.17	14.55	32.13	29.65	16.29
Merged-chr1-139068413-1	chr1	139068313	139068513	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166501, intron 9 of 21)	GA-rich|Low_complexity|Low_complexity	90756.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.63	1.51	3.42	8.85	9.0	5.02	3.32	9.25	5.7	0.5	3.52	7.52
Merged-chrX-159802617-1	chrX	159802517	159802717	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 2 of 16)	intron (NM_021389, intron 2 of 16)	-37851.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	8.48	2.26	5.13	8.85	8.18	5.33	2.99	7.74	0.98	5.52	9.55	1.88
Merged-chr19-59052212-3	chr19	59052107	59052307	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 2 of 16)	intron (NM_001114312, intron 2 of 16)	23862.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	23.82	21.88	24.53	32.18	21.27	6.59	11.63	19.71	25.37	17.57	23.11	18.17
Merged-chr7-98793262-1	chr7	98793162	98793362	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41850.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.65	2.52	3.42	6.03	6.14	6.59	6.31	9.14	2.36	2.01	2.01	2.19
Merged-chr13-76396147-3	chr13	76396023	76396223	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	11162.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	18.57	11.82	12.55	19.31	15.96	11.29	26.91	25.71	17.9	16.57	27.64	16.92
Merged-chr3-131965676-1	chr3	131965576	131965776	+	975.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119616.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	1.76	6.85	5.23	4.09	3.76	3.99	10.09	12.0	5.02	18.09	6.27
Merged-chr4-155582438-1	chr4	155582338	155582538	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355599, intron 2 of 10)	intron (NM_001355599, intron 2 of 10)	18623.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	5.65	5.53	3.42	0.8	2.05	9.41	3.65	12.36	2.75	0.0	7.03	2.82
Merged-chr13-32965343-3	chr13	32965279	32965479	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011454)	promoter-TSS (NM_011454)	-134.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	12.52	14.84	15.97	16.09	21.27	10.98	15.61	16.15	12.98	8.54	14.07	6.27
Merged-chr10-26798183-1	chr10	26798083	26798283	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	25671.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.04	2.26	6.85	2.41	3.68	0.63	9.97	6.7	6.88	4.02	2.01	8.14
Merged-chr13-40844315-3	chr13	40844221	40844421	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15447.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	11.31	16.85	30.23	18.1	29.05	15.05	11.29	28.82	21.05	25.11	29.65	12.84
Merged-chr1-120449781-3	chr1	120449680	120449880	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55244.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	26.65	15.85	17.11	33.38	2.05	11.6	7.97	10.85	21.24	21.09	29.14	7.52
Merged-chr1-21014663-1	chr1	21014563	21014763	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	63037.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	1.62	3.52	2.85	4.42	11.05	10.98	15.61	18.5	2.36	2.01	8.04	4.7
Merged-chr15-59145785-3	chr15	59145698	59145898	+	974.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63772.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	12.92	13.58	20.54	11.26	27.41	26.03	24.58	29.86	30.09	18.58	41.2	31.64
Merged-chr13-114885313-2	chr13	114885212	114885412	+	974.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008396, intron 3 of 29)	intron (NM_008396, intron 3 of 29)	46788.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	32.3	23.39	42.78	53.49	8.18	11.92	20.59	18.53	5.51	5.02	8.54	6.58
Merged-chr10-21622271-3	chr10	21622172	21622372	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	29127.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	19.79	7.55	12.55	15.69	17.18	14.11	11.63	13.91	20.26	19.08	23.62	13.78
Merged-chr16-33921658-3	chr16	33921569	33921769	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	45369.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	15.34	9.06	21.68	15.69	13.09	19.13	15.94	24.2	14.55	28.62	35.68	12.84
Merged-chr3-106496147-3	chr3	106496047	106496247	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	10107.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	15.75	11.32	13.69	14.88	26.59	28.54	22.59	19.26	20.06	40.67	21.1	22.24
Merged-chr2-166650625-3	chr2	166650521	166650721	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	63211.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	12.52	13.83	25.67	23.33	25.36	39.51	24.25	49.49	27.54	30.13	45.73	18.17
Merged-chr10-117209795-3	chr10	117209699	117209899	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14708.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	18.57	18.36	11.41	16.49	14.32	26.65	9.97	16.74	24.0	20.08	24.12	25.06
Merged-chr12-85192848-3	chr12	85192761	85192961	+	974.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15548.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	21.8	18.61	10.27	33.38	22.09	30.42	23.58	28.26	26.95	28.12	26.13	17.23
Merged-chr12-113031609-3	chr12	113031494	113031694	+	974.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	ORR1F|LTR|ERVL-MaLR	17086.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	47.65	40.75	27.38	26.95	11.45	26.97	15.94	17.61	22.82	19.58	22.61	8.77
Merged-chr7-114890302-3	chr7	114890195	114890395	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58355.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	17.36	19.62	20.54	8.85	33.55	20.07	14.28	24.5	29.9	11.55	16.08	12.53
Merged-chr13-10107516-3	chr13	10107423	10107623	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 3 of 4)	MER105|DNA|DNA	253280.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	15.75	13.33	14.26	19.71	23.32	23.52	17.61	30.31	27.73	27.11	32.66	24.43
Merged-chr5-137333596-3	chr5	137333487	137333687	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	-5.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	30.69	20.63	30.23	12.07	21.68	23.2	15.28	17.38	38.94	24.1	39.19	18.8
Merged-chr5-113842014-3	chr5	113841924	113842124	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011779)	TTS (NM_011779)	-11523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	19.38	28.93	34.23	10.05	44.18	58.01	27.24	32.05	42.09	40.67	30.65	29.76
Merged-chr4-84545342-1	chr4	84545242	84545442	+	974.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172870, intron 2 of 5)	CpG	129744.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	6.06	10.06	6.28	6.03	15.14	21.64	15.28	13.29	9.44	6.53	20.1	8.14
Merged-chr2-120425021-3	chr2	120424939	120425139	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20923.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	12.11	12.58	25.67	29.76	19.64	26.03	15.61	18.39	22.82	14.06	25.12	20.36
Merged-chr5-150140664-3	chr5	150140574	150140774	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119256.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	25.84	11.07	13.12	18.1	23.73	22.89	14.95	36.53	31.08	34.14	35.17	23.49
Merged-chr15-80563827-3	chr15	80563738	80563938	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-3368.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	21.4	17.36	12.55	21.32	22.5	25.09	11.96	23.61	23.41	21.09	29.14	12.22
Merged-chr11-23305413-3	chr11	23305310	23305510	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1485.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	31.5	15.59	33.09	33.38	32.32	29.16	26.91	9.7	43.86	38.66	26.63	27.57
Merged-chr10-94552328-3	chr10	94552222	94552422	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	1402.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	14.54	16.1	23.96	30.97	24.55	15.37	17.94	31.01	24.39	12.05	24.62	13.16
Merged-chrUn_JH584304-5805-1	chrUn_JH584304	5705	5905	+	974.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	53884.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.41	15.57	13.57	24.12
Merged-chr8-10858083-3	chr8	10857982	10858182	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24372.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	20.19	18.86	30.8	34.19	20.46	17.87	11.96	31.49	25.18	28.12	24.12	10.02
Merged-chr8-35380120-3	chr8	35380018	35380218	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	4377.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	21.4	12.32	20.54	35.39	14.73	20.7	17.94	38.78	12.59	16.07	21.1	11.28
Merged-chr4-56222221-3	chr4	56222092	56222292	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	519233.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	19.79	23.39	18.25	22.93	30.27	22.89	7.64	19.01	35.6	21.59	23.11	11.9
Merged-chr15-57898135-3	chr15	57898023	57898223	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5705.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	13.73	11.07	3.99	11.26	6.14	11.29	9.97	15.5	14.95	9.04	23.62	14.41
Merged-chr17-67341672-3	chr17	67341592	67341792	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	12767.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	10.09	17.86	14.83	15.28	31.91	29.16	39.53	45.45	26.16	14.56	27.64	13.47
Merged-chr1-23867568-3	chr1	23867455	23867655	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290683, intron 4 of 9)	MTD|LTR|ERVL-MaLR	42181.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	24.23	11.57	39.93	41.43	38.05	31.36	18.27	44.5	37.96	35.65	63.31	38.85
Merged-chr9-57158279-3	chr9	57158191	57158391	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	8.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	27.86	22.89	23.96	12.47	42.55	36.37	24.58	31.49	36.78	23.6	39.7	33.83
Merged-chr16-32533313-3	chr16	32533198	32533398	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37017.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	23.82	26.41	42.21	33.78	14.73	41.39	25.24	19.85	17.51	16.57	17.59	10.65
Merged-chr4-149698493-4	chr4	149698397	149698597	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008840, intron 1 of 24)	CpG	211.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	12.92	14.84	25.1	22.12	7.36	25.09	11.29	10.99	17.9	22.09	19.6	18.8
Merged-chr12-101740251-3	chr12	101740142	101740342	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21719.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	29.88	17.36	25.67	30.97	24.55	8.47	37.87	38.55	24.19	20.08	56.28	27.88
Merged-chr4-108459648-6	chr4	108459546	108459746	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 1 of 30)	CpG	220.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	11.31	11.07	10.84	9.25	12.27	8.15	9.97	12.0	20.85	18.58	15.07	24.12
Merged-chr8-90840220-3	chr8	90840111	90840311	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	MamRep605|LTR?|LTR?	11376.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	14.13	10.06	18.25	6.44	15.55	14.42	11.63	19.01	11.8	15.06	27.13	6.58
Merged-chr2-45047546-3	chr2	45047439	45047639	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-24362.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	19.38	15.85	18.83	8.45	13.09	22.89	8.64	8.8	21.24	22.59	21.1	5.64
Merged-chr11-68519559-3	chr11	68519446	68519646	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	16527.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	24.23	20.12	38.22	39.42	31.5	35.43	8.97	17.36	24.39	27.62	29.65	10.96
Merged-chr2-93167221-3	chr2	93167114	93167314	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20334.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	17.77	18.11	55.33	22.52	7.77	13.17	13.62	21.42	23.6	16.57	38.69	33.83
Merged-chr10-80114724-3	chr10	80114624	80114824	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1079.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	15.34	15.34	20.54	10.05	15.14	11.6	10.96	8.78	34.62	26.11	33.67	10.34
Merged-chr3-52630380-3	chr3	52630275	52630475	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109349.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	11.31	12.58	20.54	17.7	18.0	27.28	21.59	38.86	14.16	16.57	38.19	10.96
Merged-chr10-100898694-3	chr10	100898608	100898808	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157073.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	13.33	21.38	13.69	17.7	29.86	29.48	19.27	31.09	27.73	28.12	30.15	20.68
Merged-chr10-88714967-3	chr10	88714864	88715064	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16137.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	15.75	11.57	23.96	18.5	18.82	23.83	20.59	26.47	26.16	13.56	37.69	16.6
Merged-chr9-64737118-3	chr9	64736985	64737185	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	671.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	12.11	13.08	16.54	12.07	13.5	21.64	10.96	13.74	24.19	24.1	16.58	15.66
Merged-chr19-43771658-3	chr19	43771550	43771750	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-10658.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	25.84	19.12	17.68	26.55	24.14	22.26	16.28	24.25	25.57	22.59	27.13	10.65
Merged-chr6-129532703-3	chr6	129532538	129532738	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020590)	promoter-TSS (NM_020590)	-554.0	NM_020590	57436.0	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	18.57	8.8	11.41	10.46	38.05	28.22	16.28	19.21	18.49	25.61	19.09	13.16
Merged-chr11-106664660-3	chr11	106664562	106664762	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	50619.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	16.96	15.85	32.52	18.5	27.82	34.81	11.96	5.24	24.39	35.15	15.07	13.78
Merged-chr16-37684883-3	chr16	37684790	37684990	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30522.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	22.61	14.34	10.84	17.7	27.0	27.91	10.63	23.78	26.55	25.61	32.66	15.98
Merged-chr9-90269453-1	chr9	90269353	90269553	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1316.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	12.11	10.06	13.12	18.9	8.18	15.68	21.26	16.12	19.08	10.54	21.61	18.8
Merged-chrX-98554083-1	chrX	98553983	98554183	+	974.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001313754)	TTS (NM_001313754)	336942.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.81	2.52	1.14	11.26	10.23	2.82	12.95	17.66	5.11	6.53	8.04	1.25
Merged-chr7-59230577-3	chr7	59230466	59230666	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	1816.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	18.57	17.61	11.98	21.72	23.73	13.8	19.6	37.04	19.28	33.64	28.64	29.45
Merged-chr17-50675435-3	chr17	50675375	50675575	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-23206.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	8.48	6.04	18.25	10.05	7.77	10.98	15.94	15.42	12.0	18.58	12.56	9.08
Merged-chr16-50752398-3	chr16	50752285	50752485	+	974.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19612.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	12.52	10.82	5.7	19.31	25.77	32.61	36.54	19.93	22.03	14.06	24.62	21.93
Merged-chr16-13373171-3	chr16	13373063	13373263	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	14742.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	11.71	13.08	24.53	17.29	18.82	14.74	14.95	20.86	20.85	17.57	33.67	21.3
Merged-chr12-99641106-3	chr12	99641000	99641200	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13126.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	14.13	8.8	15.4	22.93	17.18	6.27	19.6	31.74	21.24	27.62	42.21	19.11
Merged-chr15-79455606-3	chr15	79455505	79455705	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13462.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	29.88	14.59	15.4	11.66	33.96	25.71	15.61	22.54	46.42	26.61	50.25	23.81
Merged-chr5-151211067-3	chr5	151210953	151211153	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20860.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	12.52	13.08	14.83	24.53	22.09	12.86	6.64	10.96	38.16	33.14	34.17	20.68
Merged-chr4-115838393-3	chr4	115838299	115838499	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-799.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	23.02	26.66	25.67	12.07	31.09	16.93	10.96	15.45	38.35	46.19	36.68	29.45
Merged-chr11-3150937-2	chr11	3150817	3151017	+	974.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	26896.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	22.21	16.85	18.25	30.16	18.0	12.86	29.56	14.64	1.18	1.0	0.0	0.0
Merged-chr3-69156145-3	chr3	69156048	69156248	+	974.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126533, intron 2 of 2)	B4A|SINE|B4	24915.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	28.67	11.32	51.34	43.44	31.5	23.83	60.79	51.2	84.18	80.34	89.44	66.73
Merged-chr10-59967374-3	chr10	59967279	59967479	+	974.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15609.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	20.19	14.34	20.54	26.55	40.5	12.86	47.5	43.49	27.93	15.06	48.74	19.74
Merged-chr4-40174456-3	chr4	40174368	40174568	+	974.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 4 of 20)	intron (NM_007386, intron 4 of 20)	31203.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	18.17	13.83	17.11	7.24	29.05	36.37	39.86	40.82	12.98	13.56	21.61	15.98
Merged-chr12-100432105-1	chr12	100432005	100432205	+	974.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	MTD|LTR|ERVL-MaLR	88717.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	7.27	2.52	2.28	4.83	15.96	23.52	5.65	10.01	0.79	3.51	5.02	0.63
Merged-chr18-32405492-3	chr18	32405398	32405598	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-27214.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	26.25	13.33	11.41	41.02	35.59	21.64	25.24	28.57	33.83	34.14	57.28	31.01
Merged-chr13-23530404-3	chr13	23530330	23530530	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-614.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	17.36	19.12	15.97	24.94	21.68	20.07	7.97	6.87	32.45	22.59	16.58	13.47
Merged-chr6-118128202-3	chr6	118128099	118128299	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	10631.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	11.71	11.32	20.54	18.5	15.55	15.68	24.58	32.78	11.21	16.07	23.62	16.6
Merged-chr2-165453515-3	chr2	165453414	165453614	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	19683.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	16.15	18.36	21.11	17.29	29.05	10.35	12.95	22.63	35.01	14.56	36.18	14.41
Merged-chr5-96163027-2	chr5	96162917	96163117	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1027.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	11.31	12.58	26.24	8.45	12.68	13.48	16.28	16.26	14.95	16.07	14.07	9.71
Merged-chr11-74577227-1	chr11	74577127	74577327	+	974.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	12931.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.81	1.76	6.85	1.61	13.91	11.6	18.6	10.99	5.31	15.06	1.51	1.25
Merged-chr6-83017293-3	chr6	83017181	83017381	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	L3|LINE|CR1	16190.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.46	21.13	13.69	11.26	17.18	17.25	7.64	13.37	17.7	19.58	27.13	12.22
Merged-chr8-88282857-3	chr8	88282760	88282960	+	974.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109756)	promoter-TSS (NM_001109756)	-132.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	14.94	14.09	19.4	27.75	27.41	17.25	15.28	26.19	17.31	11.05	27.13	25.06
Merged-chr15-78591935-3	chr15	78591805	78592005	+	974.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5142.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	11.31	8.8	14.26	12.87	32.32	15.05	37.87	40.68	43.27	30.63	74.37	29.45
Merged-chr16-36072114-3	chr16	36071998	36072198	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	438.0	NM_001159421	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	26.25	22.64	9.7	20.11	38.86	29.16	20.26	21.25	30.68	43.18	34.67	14.41
Merged-chr13-44415306-3	chr13	44415260	44415460	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-24367.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	29.07	14.59	21.11	27.35	31.91	28.85	28.9	26.1	20.65	14.56	14.07	7.83
Merged-chr7-73524588-3	chr7	73524508	73524708	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17138.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	12.92	12.83	19.97	15.69	25.77	24.46	21.92	18.98	18.88	24.1	27.64	11.9
Merged-chr8-36347119-3	chr8	36347022	36347222	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97606.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	21.0	25.4	10.84	32.98	24.14	22.89	13.95	21.98	28.72	15.06	46.73	18.17
Merged-chr12-72336224-3	chr12	72336126	72336326	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	72828.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	16.56	10.06	18.25	17.29	17.18	19.76	19.93	30.87	51.34	47.7	55.27	40.41
Merged-chr5-150598978-3	chr5	150598862	150599062	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001362416)	TTS (NM_001362416)	-4437.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	13.73	15.09	5.13	16.09	11.05	18.5	9.63	9.56	18.1	26.11	19.09	11.28
Merged-chr2-23571915-4	chr2	23571814	23572014	+	974.4345089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001165997, exon 1 of 12)	5' UTR (NM_001165997, exon 1 of 12)	190.0	NM_029773	76857.0	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	12.11	12.07	10.84	13.67	11.05	6.27	11.63	10.09	8.85	11.05	13.57	10.02
Merged-chr5-16502111-2	chr5	16501993	16502193	+	974.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51402.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.04	4.28	7.99	20.11	22.5	12.54	12.62	31.71	14.16	21.09	24.12	13.16
Merged-chr11-88954980-3	chr11	88954877	88955077	+	974.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	465.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	21.8	15.85	29.09	19.31	10.64	32.61	22.59	27.28	42.88	32.13	36.68	25.37
Merged-chr16-21787759-3	chr16	21787640	21787840	+	974.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023737)	promoter-TSS (NM_023737)	94.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	12.11	17.36	17.11	19.71	12.27	17.56	22.26	19.82	6.49	18.58	13.57	12.22
Merged-chr12-111732660-3	chr12	111732549	111732749	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	19380.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	16.15	21.38	16.54	20.11	27.82	27.28	12.29	22.4	53.89	38.66	57.28	28.19
Merged-chr10-19937117-3	chr10	19937032	19937232	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	2606.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	55.32	50.81	56.48	22.93	56.05	77.77	38.86	29.83	22.23	39.67	21.61	14.1
Merged-chr17-57198465-3	chr17	57198358	57198558	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-4277.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	14.54	18.61	23.39	11.66	14.73	15.68	20.59	16.51	31.67	28.62	36.68	17.23
Merged-chr18-80715480-3	chr18	80715371	80715571	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2400.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	16.96	13.58	11.41	17.29	24.55	14.74	15.94	21.0	17.9	7.53	18.09	5.01
Merged-chr2-121807112-3	chr2	121807011	121807211	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-54.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	45.23	39.49	54.76	33.78	65.87	59.89	50.82	82.93	27.93	11.55	37.69	20.05
Merged-chr2-84622975-3	chr2	84622907	84623107	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	26473.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	39.57	34.46	22.82	17.7	28.64	61.77	48.5	37.01	27.34	34.65	28.64	7.52
Merged-chr10-50612205-3	chr10	50612104	50612304	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	19535.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	11.71	11.32	27.95	22.52	16.36	16.93	17.61	28.37	16.33	25.11	24.12	9.4
Merged-chr17-24352799-2	chr17	24352701	24352901	+	974.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039581, intron 1 of 31)	intron (NM_001039581, intron 1 of 31)	778.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	12.52	20.88	30.8	15.69	18.0	24.77	18.93	20.52	3.15	6.03	5.02	2.19
Merged-chr3-152114979-1	chr3	152114879	152115079	+	974.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	50921.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	1.21	3.02	8.56	8.45	12.27	22.89	14.95	16.77	6.1	3.01	2.51	2.19
Merged-chr6-29940625-3	chr6	29940509	29940709	+	974.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037740, intron 16 of 20)	intron (NM_001037740, intron 16 of 20)	23596.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	24.63	24.15	37.65	7.24	21.68	25.4	16.61	12.36	34.62	28.62	29.65	10.65
Merged-chr17-29362493-3	chr17	29362382	29362582	+	974.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1568.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	15.75	17.61	20.54	40.62	26.59	19.44	11.29	28.79	33.24	14.56	29.14	27.25
Merged-chr2-102977415-3	chr2	102977312	102977512	+	974.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75747.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.11	16.6	16.54	28.56	25.77	19.76	11.63	16.32	28.91	40.67	35.68	26.0
Merged-chr10-99599561-1	chr10	99599461	99599661	+	974.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-9610.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.03	17.31	12.55	26.13	10.02
Merged-chr16-30070387-4	chr16	30070358	30070558	+	974.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5101.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	9.29	5.28	7.99	6.44	9.41	14.11	6.31	12.64	14.55	17.57	29.14	10.65
Merged-chr2-128058061-3	chr2	128057964	128058164	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-67974.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	18.57	21.88	17.11	7.24	18.41	18.81	11.63	12.31	26.16	23.6	29.65	11.9
Merged-chr16-95674603-3	chr16	95674495	95674695	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27812.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	14.54	18.36	15.97	32.98	20.46	15.37	13.62	14.52	16.13	12.55	22.61	9.4
Merged-chr3-110250204-3	chr3	110250113	110250313	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	786.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	18.98	21.38	14.26	23.33	14.32	17.56	28.57	32.07	15.93	14.06	30.65	18.48
Merged-chr5-140105949-3	chr5	140105854	140106054	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	68964.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	21.8	7.8	32.52	52.69	25.36	10.98	27.57	25.54	17.9	9.04	42.71	9.71
Merged-chr17-28207739-3	chr17	28207644	28207844	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027185)	promoter-TSS (NM_027185)	-34.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	19.79	14.09	14.83	16.89	13.91	22.58	13.95	31.99	18.88	14.06	18.59	8.46
Merged-chr3-30498711-1	chr3	30498611	30498811	+	974.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	10964.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.0	1.01	3.42	1.61	9.0	24.15	19.93	19.29	6.88	2.01	4.52	2.82
Merged-chr17-84141162-4	chr17	84141116	84141316	+	974.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46731.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.67	15.59	17.11	8.04	22.91	26.65	36.54	25.35	22.42	27.11	25.12	13.78
Merged-chr11-18011365-3	chr11	18011276	18011476	+	974.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57406.0	NR_131915	102633673.0	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	20.19	26.41	33.66	23.73	23.73	30.73	12.95	28.68	12.0	11.55	20.1	6.89
Merged-chr2-29623459-2	chr2	29623370	29623570	+	974.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	3750.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	15.34	5.28	5.13	6.03	12.68	15.05	7.31	13.82	14.75	13.56	12.06	10.34
Merged-chr11-87760970-7	chr11	87760932	87761132	+	974.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172449, exon 1 of 32)	5' UTR (NM_172449, exon 1 of 32)	491.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	19.38	24.65	17.11	27.35	8.59	18.19	7.97	5.36	24.19	28.12	21.1	13.47
Merged-chr11-23357513-3	chr11	23357434	23357634	+	974.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190401, intron 10 of 79)	intron (NM_001190401, intron 10 of 79)	50639.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	22.21	12.32	12.55	17.29	21.27	15.37	15.61	21.53	18.1	13.56	26.13	17.23
Merged-chr15-64061317-3	chr15	64061198	64061398	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-850.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	23.02	30.94	23.96	20.51	20.05	43.9	17.27	21.14	42.48	35.65	37.69	9.71
Merged-chr14-121973247-3	chr14	121973154	121973354	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-8061.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	11.31	9.81	14.83	16.49	13.5	12.86	8.97	16.88	13.77	17.07	22.61	15.98
Merged-chr16-46011078-3	chr16	46010957	46011157	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-644.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	15.34	8.3	30.23	17.7	25.36	23.2	13.62	27.9	27.93	16.07	30.65	15.98
Merged-chr1-185193743-3	chr1	185193636	185193836	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10432.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	16.15	16.85	15.97	19.31	19.23	26.03	18.27	18.42	12.39	21.59	23.62	14.41
Merged-chr7-129591978-3	chr7	129591883	129592083	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172255, exon 1 of 29)	exon (NM_172255, exon 1 of 29)	120.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	21.8	16.35	13.12	27.75	15.55	24.15	20.59	27.14	24.39	29.12	22.61	31.33
Merged-chr11-86603908-3	chr11	86603812	86604012	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-19754.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	27.05	29.93	29.09	20.91	28.64	31.67	20.93	19.71	25.57	26.11	14.57	20.99
Merged-chr5-102001112-3	chr5	102000999	102001199	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	68822.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	18.17	14.59	21.11	10.46	31.91	34.49	20.59	37.85	17.11	14.56	18.09	13.78
Merged-chr1-165762110-3	chr1	165762002	165762202	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-1656.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	12.52	14.34	24.53	15.69	19.64	10.98	15.28	12.64	25.57	18.58	19.6	8.14
Merged-chr2-27728140-3	chr2	27728035	27728235	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	17552.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	33.52	36.47	44.5	12.47	29.05	45.47	36.54	31.37	70.22	47.2	55.78	19.11
Merged-chr6-116666287-3	chr6	116666189	116666389	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	L1MA4|LINE|L1	7547.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	25.84	15.34	19.97	14.48	36.0	34.18	23.25	23.89	34.22	56.74	40.7	27.25
Merged-chr13-94630287-3	chr13	94630189	94630389	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158654.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.85	12.83	20.54	20.91	4.09	12.86	7.64	9.76	18.49	7.53	18.09	19.74
Merged-chr11-121228973-6	chr11	121228833	121229033	+	974.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	7.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	10.9	20.88	19.4	12.87	10.23	14.74	9.97	8.89	16.72	17.57	15.07	21.93
Merged-chr4-45530132-4	chr4	45530087	45530287	+	974.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033306, exon 1 of 6)	exon (NM_001033306, exon 1 of 6)	641.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	8.88	15.34	13.12	16.09	11.05	15.99	16.94	13.68	18.88	32.64	14.57	16.92
Merged-chr11-97661484-3	chr11	97661377	97661577	+	974.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1935.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	22.21	12.32	19.97	8.04	20.46	18.19	27.9	8.24	39.73	35.65	28.14	8.77
Merged-chr5-121596769-3	chr5	121596677	121596877	+	974.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-2953.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	24.23	12.83	13.12	31.77	27.0	22.58	14.95	16.63	22.23	17.57	23.62	22.24
Merged-chr4-32288685-5	chr4	32288586	32288786	+	974.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-128749.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.44	8.8	5.13	6.84	13.5	19.44	7.31	10.01	8.65	11.05	12.56	5.33
Merged-chr12-87439140-3	chr12	87439062	87439262	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102565, intron 2 of 5)	intron (NM_001102565, intron 2 of 5)	-1405.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	16.56	26.91	19.4	13.67	16.36	19.13	7.31	10.51	18.29	23.6	21.61	20.05
Merged-chr11-40835835-3	chr11	40835747	40835947	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-80561.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	16.96	10.06	34.8	33.78	14.73	14.74	19.27	33.7	21.24	13.05	24.12	10.34
Merged-chr7-119921203-3	chr7	119921097	119921297	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21086.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	19.38	9.06	15.97	17.29	16.36	18.81	25.24	19.12	29.9	30.13	32.66	15.35
Merged-chr1-165669089-3	chr1	165668985	165669185	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-34544.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	27.05	19.87	9.7	18.1	21.27	24.77	12.29	15.95	21.44	10.54	21.1	5.95
Merged-chr15-102517234-3	chr15	102517135	102517335	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009582)	promoter-TSS (NM_009582)	-231.0	NM_009582	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	24.63	14.59	15.97	11.26	12.68	19.13	10.3	23.41	14.16	23.6	19.09	16.6
Merged-chr13-56711966-3	chr13	56711871	56712071	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164042, intron 1 of 6)	L1MB7|LINE|L1	8303.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	12.11	14.09	20.54	26.14	10.64	20.07	16.61	17.27	31.67	23.1	40.2	28.82
Merged-chr9-53704670-3	chr9	53704573	53704773	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	1559.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	19.38	13.58	10.84	18.1	14.32	15.37	15.61	14.83	26.16	15.06	16.08	17.54
Merged-chr13-113875914-3	chr13	113875827	113876027	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	81419.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.27	8.8	23.96	18.5	15.55	15.37	23.25	44.05	29.11	24.1	32.66	29.76
Merged-chr10-81390016-3	chr10	81389903	81390103	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3061.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	21.8	7.55	14.26	22.93	16.36	16.31	10.96	19.15	23.21	14.56	27.64	16.6
Merged-chr17-69383997-8	chr17	69383870	69384070	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009547, exon 1 of 3)	5' UTR (NM_009547, exon 1 of 3)	166.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	18.98	15.09	19.4	17.7	15.96	22.89	32.22	25.57	24.59	23.1	22.11	14.41
Merged-chr14-58563303-3	chr14	58563209	58563409	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	490623.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	33.52	16.35	26.24	28.15	15.55	27.28	9.97	13.91	54.29	42.68	64.82	28.82
Merged-chr4-135922051-1	chr4	135921951	135922151	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	1325.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	24.23	10.82	21.11	12.07	4.09	3.76	1.33	4.04	5.11	2.01	1.0	0.94
Merged-chr7-68795791-1	chr7	68795691	68795891	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46553.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	2.42	2.01	5.13	6.03	12.27	4.7	17.61	12.84	1.18	3.01	5.53	5.64
Merged-chr19-40687390-3	chr19	40687289	40687489	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	27619.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	15.75	10.82	36.51	23.33	16.36	10.66	19.93	25.51	14.55	8.54	13.57	25.06
Merged-chrX-73580355-3	chrX	73580243	73580443	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59098.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	16.96	13.08	13.69	20.11	14.32	29.48	13.62	26.19	27.93	26.61	24.12	11.59
Merged-chr2-66120189-3	chr2	66120095	66120295	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	4598.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	13.33	10.56	26.81	23.33	20.05	29.79	25.91	32.83	32.26	39.67	58.79	25.06
Merged-chr15-83173054-1	chr15	83172954	83173154	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-846.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	4.85	3.52	1.14	2.82	7.77	7.53	7.97	7.54	9.24	5.52	6.53	7.83
Merged-chr17-56257461-1	chr17	56257361	56257561	+	974.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	668.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	6.46	4.53	5.7	2.41	4.5	2.82	0.66	0.17	8.46	5.52	5.02	8.14
Merged-chr4-28967892-3	chr4	28967794	28967994	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290434)	TTS (NM_001290434)	-100185.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	17.77	8.8	37.65	23.33	24.96	14.11	42.19	29.36	42.29	31.13	83.91	33.21
Merged-chr2-12327351-1	chr2	12327251	12327451	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25407.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	4.04	4.02	1.71	2.41	5.32	2.51	6.31	7.46	5.11	2.51	6.03	1.88
Merged-chr12-36317279-1	chr12	36317179	36317379	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3110.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	7.67	6.54	2.85	11.26	8.18	3.45	2.99	10.68	6.1	4.02	8.04	4.7
Merged-chr3-133623440-6	chr3	133623307	133623507	+	973.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79017.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	10.5	9.56	12.55	10.05	18.41	12.54	13.29	10.29	8.85	15.57	12.56	4.07
Merged-chr2-122153058-3	chr2	122152978	122153178	+	973.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009735)	TTS (NM_009735)	5391.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	17.77	9.06	12.55	12.47	22.5	11.29	18.6	23.07	29.7	30.13	29.14	16.92
Merged-chr16-38460251-3	chr16	38460136	38460336	+	973.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	1303.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	21.0	10.06	10.27	14.88	23.32	21.95	20.26	13.15	14.36	22.59	33.67	20.36
Merged-chr7-79496190-3	chr7	79496078	79496278	+	973.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3848.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	16.15	16.85	19.4	15.28	21.68	21.01	7.31	16.07	25.77	18.08	46.73	14.72
Merged-chr9-92457849-2	chr9	92457747	92457947	+	973.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_178711, exon 1 of 9)	5' UTR (NM_178711, exon 1 of 9)	469.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	5.25	11.07	5.7	14.88	11.86	14.42	14.28	13.71	4.52	6.03	5.53	4.39
Merged-chr15-78450289-3	chr15	78450177	78450377	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18357.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	21.0	12.83	35.37	6.44	26.18	42.02	13.62	17.97	34.42	45.69	18.59	14.1
Merged-chr8-82401286-3	chr8	82401187	82401387	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	1299.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	25.04	16.6	13.69	18.5	16.36	27.28	17.94	22.15	35.99	35.65	30.15	12.22
Merged-chr6-131244682-3	chr6	131244572	131244772	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008462, intron 2 of 7)	intron (NM_008462, intron 2 of 7)	2690.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	22.21	22.89	23.39	17.29	29.46	24.46	16.28	36.7	17.9	19.58	23.11	12.84
Merged-chr10-34138251-3	chr10	34138144	34138344	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-10272.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	16.56	13.83	18.25	16.09	28.64	24.46	16.61	22.37	30.29	25.11	31.15	10.96
Merged-chr11-93729320-3	chr11	93729229	93729429	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	156437.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	12.92	9.56	27.38	20.11	29.05	22.58	28.57	46.6	61.56	53.22	60.8	43.23
Merged-chr17-87044594-3	chr17	87044509	87044709	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19048.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	14.94	26.91	17.11	18.1	8.18	25.4	15.28	15.0	33.63	23.1	32.16	15.98
Merged-chr4-84064836-2	chr4	84064722	84064922	+	973.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19943.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	17.77	14.84	7.99	6.44	20.05	13.17	6.98	13.43	1.38	2.01	1.0	1.25
Merged-chr10-60305439-3	chr10	60305344	60305544	+	973.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 65 of 68)	intron (NM_001252635, intron 65 of 68)	20983.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	27.46	15.34	35.94	14.48	38.46	10.98	17.94	25.57	25.96	34.65	31.15	26.31
Merged-chr1-38902766-1	chr1	38902666	38902866	+	973.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4606.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	2.42	5.03	3.99	6.84	11.45	15.05	14.28	20.75	2.56	1.0	3.01	3.13
Merged-chr14-25646296-3	chr14	25646192	25646392	+	973.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310666, intron 10 of 23)	intron (NM_001310666, intron 10 of 23)	42779.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	35.94	23.9	46.21	28.15	55.64	79.33	47.17	53.27	33.24	22.59	42.21	9.08
Merged-chr18-32389854-3	chr18	32389762	32389962	+	973.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11578.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	17.36	14.84	15.97	19.31	21.68	13.17	14.28	36.0	19.28	8.54	26.63	15.04
Merged-chr19-32912127-1	chr19	32912027	32912227	+	973.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR31C_MM|LTR|ERVK	154550.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	1.21	1.51	1.14	0.0	2.05	3.14	0.66	0.81	19.28	15.57	20.6	18.17
Merged-chr9-61371399-3	chr9	61371270	61371470	+	973.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-996.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	19.79	17.86	8.56	14.08	8.59	13.17	24.25	10.49	24.78	26.61	17.59	20.68
Merged-chr13-23816310-3	chr13	23816201	23816401	+	973.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144836, intron 5 of 11)	intron (NM_144836, intron 5 of 11)	9274.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	17.36	15.85	12.55	34.59	33.96	31.36	20.59	42.22	22.82	24.6	37.18	16.29
Merged-chr10-7600803-3	chr10	7600707	7600907	+	973.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	11007.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	25.04	24.4	10.84	22.52	21.27	23.83	12.29	19.63	31.47	23.6	29.14	9.4
Merged-chr12-111670944-3	chr12	111670863	111671063	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021273, exon 5 of 8)	exon (NM_021273, exon 5 of 8)	1375.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	12.11	8.8	12.55	16.09	19.64	13.8	11.29	10.35	18.49	23.1	21.1	15.04
Merged-chr11-117413350-3	chr11	117413258	117413458	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1031.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	26.25	28.93	34.23	30.97	28.23	45.78	27.9	43.71	28.52	18.58	34.17	26.31
Merged-chr17-28528185-3	chr17	28528083	28528283	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2678.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	18.17	14.09	19.97	14.08	16.77	10.35	4.98	18.79	14.95	22.09	21.1	16.6
Merged-chr2-156730639-3	chr2	156730541	156730741	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	9362.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	26.65	17.1	27.95	18.1	18.0	28.54	17.27	17.94	28.72	22.59	20.1	16.92
Merged-chr10-25426704-3	chr10	25426624	25426824	+	973.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	18356.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	10.5	20.63	27.38	22.93	9.0	25.4	22.26	18.34	18.29	18.58	16.08	11.59
Merged-chr10-57796286-3	chr10	57796148	57796348	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1704.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	14.54	10.82	11.98	25.74	17.59	16.62	18.93	18.36	17.51	23.6	20.6	19.11
Merged-chr10-128176663-3	chr10	128176568	128176768	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-100.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	16.96	25.4	20.54	16.49	25.77	18.19	12.95	18.0	30.29	14.56	20.6	14.1
Merged-chr6-148561294-3	chr6	148561181	148561381	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	11.31	21.13	20.54	22.93	21.27	20.07	27.24	30.36	25.77	14.56	34.67	25.37
Merged-chr16-12090387-3	chr16	12090350	12090550	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	106337.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	21.0	6.04	15.97	15.28	14.32	7.21	17.27	28.04	14.95	8.03	22.61	15.04
Merged-chr5-4876778-3	chr5	4876688	4876888	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-118572.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	17.36	11.32	8.56	17.29	34.36	22.89	33.88	61.54	19.87	30.13	37.69	32.58
Merged-chr13-55510555-3	chr13	55510472	55510672	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	2874.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	18.17	19.62	22.82	12.87	21.68	41.08	16.61	10.71	25.57	32.13	28.14	13.16
Merged-chr19-55227283-3	chr19	55227168	55227368	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 8 of 20)	intron (NM_001081076, intron 8 of 20)	13968.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	17.36	15.34	19.4	16.09	24.55	22.26	10.63	17.13	23.21	35.65	18.09	18.17
Merged-chr10-53597614-4	chr10	53597404	53597604	+	973.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025541, intron 1 of 3)	CpG	543.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	12.52	7.04	13.12	5.23	21.27	19.44	18.27	12.9	10.42	12.55	19.09	6.89
Merged-chr16-50430441-6	chr16	50430206	50430406	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 1 of 16)	CpG	2083.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	18.17	17.1	18.25	16.49	11.45	17.87	13.29	13.26	17.9	24.1	17.08	19.11
Merged-chr11-116811823-3	chr11	116811719	116811919	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16227.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	19.79	11.57	16.54	18.1	14.73	18.5	5.65	16.74	13.96	21.09	13.57	5.01
Merged-chr9-72449619-1	chr9	72449519	72449719	+	973.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008613, intron 7 of 9)	intron (NM_008613, intron 7 of 9)	11090.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.4	3.02	4.56	0.8	3.27	2.2	3.65	4.54	38.94	19.08	46.73	20.05
Merged-chr4-115063270-1	chr4	115063170	115063370	+	973.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001287388, exon 3 of 5)	exon (NM_001287388, exon 3 of 5)	5459.0	NM_001287388	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	7.27	1.76	7.99	2.01	5.73	3.76	1.99	9.36	2.75	5.02	10.05	4.7
Merged-chr14-76194390-3	chr14	76194279	76194479	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57083.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	33.52	32.95	59.9	16.49	28.23	56.13	35.21	32.78	38.16	33.14	54.77	11.28
Merged-chrX-10719149-3	chrX	10719038	10719238	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001166635, exon 2 of 2)	3' UTR (NM_001166635, exon 2 of 2)	1773.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	17.36	13.83	16.54	12.47	22.5	27.59	21.59	31.21	30.68	20.08	32.16	14.41
Merged-chr11-53803275-3	chr11	53803165	53803365	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	32792.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	25.44	21.88	42.78	23.33	24.14	23.52	17.61	26.66	27.93	17.57	35.17	16.6
Merged-chr1-180265052-3	chr1	180264969	180265169	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8769.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	14.94	10.82	15.4	17.29	13.09	11.29	13.29	20.55	13.18	17.07	28.64	13.78
Merged-chr11-60802723-1	chr11	60802623	60802823	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009171, intron 3 of 11)	RMER6B|LTR|ERVK	8542.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	13.73	11.57	18.83	8.45	2.45	4.7	0.0	0.95	2.75	4.52	2.01	2.51
Merged-chr13-117048602-3	chr13	117048512	117048712	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23096.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	13.73	13.83	4.56	13.27	24.96	38.26	28.23	26.52	26.16	16.07	31.66	10.34
Merged-chr13-93771684-3	chr13	93771535	93771735	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009712)	promoter-TSS (NM_009712)	-44.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	8.48	19.87	14.26	16.49	6.55	23.2	21.92	22.12	12.19	12.05	16.58	9.4
Merged-chr14-62840691-3	chr14	62840605	62840805	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2984.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	23.42	14.09	25.1	15.69	20.86	16.31	10.3	21.06	32.85	35.15	16.58	14.72
Merged-chr9-65361138-3	chr9	65361025	65361225	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	65.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	18.17	15.59	30.8	28.96	24.55	16.62	28.23	47.66	15.14	16.07	33.67	17.23
Merged-chr11-95712169-3	chr11	95712024	95712224	+	973.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045780, intron 1 of 1)	intron (NR_045780, intron 1 of 1)	630.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	17.77	17.1	27.38	12.87	19.64	22.26	8.64	25.18	33.44	25.61	34.17	19.74
Merged-chr5-123755433-3	chr5	123755305	123755505	+	973.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042421, intron 2 of 63)	intron (NM_001042421, intron 2 of 63)	5679.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	15.34	10.31	22.82	8.45	27.82	23.52	15.94	18.17	35.8	37.16	27.13	30.39
Merged-chr6-118479421-1	chr6	118479321	118479521	+	973.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011763)	promoter-TSS (NM_011763)	-148.0	NM_011763	22750.0	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	2.83	2.01	2.85	1.21	13.09	9.41	12.62	10.57	2.95	0.5	5.02	2.82
Merged-chr15-75835662-3	chr15	75835558	75835758	+	973.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	6250.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	14.94	15.09	23.39	15.69	23.32	23.2	7.97	19.37	31.47	32.64	36.68	20.36
Merged-chr11-21567905-3	chr11	21567809	21568009	+	973.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	4025.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	23.02	11.82	45.07	10.86	19.64	17.87	14.28	27.11	16.33	11.55	22.61	19.11
Merged-chr17-14990269-2	chr17	14990180	14990380	+	973.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001123370, intron 11 of 11)	intron (NM_001123370, intron 11 of 11)	11416.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	26.65	16.1	21.68	26.14	17.18	16.31	11.96	9.98	5.9	7.03	13.06	4.7
Merged-chr11-74826345-2	chr11	74826243	74826443	+	973.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4581.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	11.71	5.79	7.99	6.84	41.32	34.18	15.61	28.01	14.36	15.06	15.58	10.65
Merged-chr6-149565978-3	chr6	149565868	149566068	+	973.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360951)	promoter-TSS (NM_001360951)	-114.0	NM_001360951	436100.0		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	22.61	14.34	9.13	19.71	18.0	21.64	26.57	22.93	31.08	16.57	29.14	19.42
Merged-chr6-134152145-3	chr6	134152031	134152231	+	973.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	116431.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	38.36	33.45	20.54	21.72	31.5	58.01	13.95	21.06	37.76	43.18	43.21	9.4
Merged-chr12-70113001-3	chr12	70112889	70113089	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104397)	promoter-TSS (NR_104397)	-954.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	44.82	31.69	35.94	25.74	23.32	45.78	17.94	35.52	24.59	17.07	39.19	10.34
Merged-chr5-72891700-3	chr5	72891599	72891799	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22663.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	9.69	13.58	5.13	12.47	21.27	15.05	7.64	13.6	17.9	21.59	27.13	6.27
Merged-chr1-153510561-3	chr1	153510467	153510667	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028749, intron 10 of 11)	intron (NM_028749, intron 10 of 11)	-22907.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	25.44	22.64	20.54	9.25	21.27	40.45	18.27	14.1	47.01	33.14	51.76	11.28
Merged-chr4-41555401-3	chr4	41555304	41555504	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	14123.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	10.5	10.31	12.55	17.29	15.14	18.19	11.96	21.25	70.81	49.21	86.43	46.99
Merged-chr11-75168947-6	chr11	75168916	75169116	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-864.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	8.08	10.31	11.98	18.5	11.86	15.68	28.23	11.52	19.08	19.08	22.61	21.62
Merged-chr2-132111537-3	chr2	132111441	132111641	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33567.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	16.15	15.34	8.56	5.63	27.41	19.13	11.29	12.2	25.37	23.1	19.09	10.34
Merged-chr10-93567273-3	chr10	93567174	93567374	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359749, intron 5 of 13)	intron (NM_001359749, intron 5 of 13)	12393.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	23.82	18.61	32.52	25.34	11.05	23.83	20.26	29.86	51.34	11.55	35.17	17.86
Merged-chr5-123832484-3	chr5	123832411	123832611	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33005.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	21.0	14.84	33.09	11.66	23.73	35.75	37.2	34.21	62.94	79.83	64.32	67.04
Merged-chr7-38182737-3	chr7	38182625	38182825	+	973.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085385)	promoter-TSS (NM_001085385)	-492.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	12.52	12.07	5.7	10.86	15.55	16.31	4.65	13.91	26.55	30.63	26.13	25.69
Merged-chr5-5186290-3	chr5	5186218	5186418	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	79750.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	13.33	13.08	18.25	14.88	17.18	12.23	14.62	27.56	23.21	20.08	19.09	12.84
Merged-chr11-120307745-3	chr11	120307642	120307842	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39671.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	31.9	22.64	19.4	24.13	13.5	18.5	4.98	11.05	39.34	26.11	33.16	12.53
Merged-chr18-88838390-3	chr18	88838243	88838443	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	55864.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	7.27	11.57	23.96	23.73	22.09	13.48	18.27	17.58	17.11	23.1	23.11	17.86
Merged-chr9-94278821-2	chr9	94278702	94278902	+	973.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	259279.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	6.46	7.04	9.13	4.02	10.23	13.8	13.29	18.48	14.36	6.53	19.6	13.78
Merged-chr4-99929926-3	chr4	99929840	99930040	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	CpG	489.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	28.27	24.15	11.41	29.36	20.05	16.31	28.23	23.05	28.91	19.58	28.14	23.18
Merged-chr13-111777388-1	chr13	111777288	111777488	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	31605.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	15.75	14.34	13.69	30.16	0.82	0.63	1.66	0.53	7.47	7.03	6.03	2.51
Merged-chr12-101758850-3	chr12	101758778	101758978	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40355.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	2.83	10.56	13.12	25.34	12.27	3.14	26.24	14.83	14.36	18.58	26.63	12.22
Merged-chr16-23307626-3	chr16	23307492	23307692	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17122.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	27.05	8.3	25.1	41.83	37.23	26.34	26.24	45.62	28.72	31.13	45.22	18.17
Merged-chr11-32560580-3	chr11	32560481	32560681	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	27315.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	40.78	19.62	49.06	38.21	37.64	34.81	63.11	63.56	27.54	13.56	45.22	20.68
Merged-chr9-35421448-3	chr9	35421337	35421537	+	973.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-30639.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	57.34	16.85	26.24	34.19	33.96	47.98	30.23	60.67	20.26	15.57	18.09	9.71
Merged-chr17-23592745-3	chr17	23592634	23592834	+	973.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011747, intron 1 of 5)	CpG	-6482.0	NM_001356268	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	19.38	10.82	10.84	20.51	21.27	21.01	9.63	19.63	30.49	19.58	33.67	14.72
Merged-chr11-76859463-3	chr11	76859351	76859551	+	973.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12443.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	21.4	14.84	35.37	15.28	22.91	18.81	18.6	17.07	15.34	19.58	16.58	15.04
Merged-chr14-54360994-5	chr14	54360901	54361101	+	973.4400019999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026936, intron 1 of 9)	CpG	160.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	24.23	25.15	23.39	23.73	20.46	13.48	7.97	23.33	29.5	25.61	18.09	23.81
Merged-chr4-136450014-3	chr4	136449910	136450110	+	973.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-19751.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	37.55	36.22	41.07	46.66	28.23	61.46	50.16	45.67	32.45	12.55	26.63	26.94
Merged-chr7-70099219-2	chr7	70099124	70099324	+	973.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	238598.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.81	0.5	4.56	4.02	18.82	22.89	21.92	27.2	20.26	21.09	30.65	13.47
Merged-chr15-62401322-5	chr15	62401205	62401405	+	973.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-181854.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	10.09	16.1	11.98	22.12	25.77	24.15	24.25	21.79	27.14	27.11	27.64	20.05
Merged-chr16-16574692-3	chr16	16574602	16574802	+	973.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14483.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	23.02	19.37	11.98	22.12	23.32	19.13	6.64	17.02	19.67	17.07	9.04	12.53
Merged-chr2-11391096-3	chr2	11390956	11391156	+	973.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	7444.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	11.71	12.58	8.56	19.71	27.41	14.74	19.6	35.72	17.51	19.08	9.04	10.96
Merged-chr12-46870257-3	chr12	46870157	46870357	+	973.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51482.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	14.13	23.64	18.83	40.22	49.5	44.53	63.44	102.0	44.25	40.67	41.2	35.09
Merged-chr11-117483063-2	chr11	117482962	117483162	+	973.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	5.25	4.53	4.56	3.62	13.09	19.13	17.94	13.21	9.83	13.56	5.02	7.52
Merged-chr10-4456608-2	chr10	4456506	4456706	+	973.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	24001.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	20.19	19.37	13.12	12.47	4.09	11.6	1.99	12.9	8.26	7.53	6.53	5.33
Merged-chr8-122559249-3	chr8	122559141	122559341	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7912.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	17.36	18.61	14.26	8.85	21.27	17.56	11.63	25.43	14.75	18.58	20.1	10.96
Merged-chr4-150474977-3	chr4	150474884	150475084	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	177190.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	16.56	9.81	16.54	18.5	17.59	12.86	16.28	33.5	23.21	6.03	9.04	12.53
Merged-chr1-120093705-3	chr1	120093623	120093823	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19943.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	8.48	11.82	27.95	4.83	12.68	10.66	6.64	14.66	25.57	28.62	35.17	27.88
Merged-chr3-31342763-3	chr3	31342661	31342861	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32442.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	14.13	15.85	15.97	17.7	32.73	26.34	19.6	23.64	21.44	18.08	24.12	10.02
Merged-chr8-119784457-3	chr8	119784361	119784561	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6045.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	16.15	13.08	10.84	17.29	25.36	24.15	8.64	20.55	27.73	12.55	28.64	21.3
Merged-chr4-57953019-3	chr4	57952924	57953124	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3387.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	15.75	20.63	10.84	8.04	19.23	35.43	4.98	7.96	24.78	38.16	22.11	15.66
Merged-chrX-48521831-1	chrX	48521731	48521931	+	973.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	2546.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	5.65	5.53	5.7	1.61	13.09	10.98	11.63	11.55	2.16	9.54	6.53	1.25
Merged-chr19-41830295-3	chr19	41830207	41830407	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	337.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	13.73	15.59	10.27	14.08	13.09	7.53	10.96	10.6	26.16	26.11	21.61	15.98
Merged-chr5-124582713-3	chr5	124582621	124582821	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181410, intron 2 of 12)	intron (NM_181410, intron 2 of 12)	3573.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	18.57	13.33	21.11	18.5	16.77	16.62	7.64	19.68	27.14	16.57	32.66	22.56
Merged-chr9-121919154-3	chr9	121919048	121919248	+	973.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2843.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	21.4	17.86	23.96	18.5	12.27	12.54	8.3	9.42	8.46	6.03	23.62	13.47
Merged-chr12-99576102-3	chr12	99576001	99576201	+	973.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	12260.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	19.38	14.09	11.41	28.56	23.73	24.77	14.28	25.57	20.65	13.05	34.17	11.28
Merged-chr15-31342155-2	chr15	31342043	31342243	+	973.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25616.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.04	9.56	5.7	2.41	34.77	26.97	21.26	38.3	16.13	20.59	19.6	9.71
Merged-chr17-35780521-3	chr17	35780400	35780600	+	973.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045459, exon 3 of 3)	non-coding (NR_045459, exon 3 of 3)	8050.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	18.17	16.1	24.53	41.43	22.09	16.62	26.91	43.23	11.41	10.04	18.59	14.41
Merged-chr4-126110196-2	chr4	126110134	126110334	+	973.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6277.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.04	12.32	18.83	5.63	9.41	18.5	4.65	7.21	18.29	24.1	31.66	9.71
Merged-chr13-112427644-2	chr13	112427551	112427751	+	973.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36419.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.23	5.53	4.56	7.24	17.59	31.98	7.31	17.83	29.5	26.11	32.16	14.41
Merged-chr18-12640674-3	chr18	12640558	12640758	+	973.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	25.44	38.48	19.97	19.71	11.86	46.1	24.91	14.97	57.04	53.22	37.69	18.17
Merged-chr2-60020037-3	chr2	60019920	60020120	+	973.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	105720.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	27.46	14.34	14.83	17.7	13.09	20.07	6.31	16.49	16.92	15.06	23.62	11.9
Merged-chr1-131963126-4	chr1	131962974	131963174	+	973.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177628, intron 1 of 4)	CpG	159.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	8.48	11.07	22.25	12.47	12.68	11.6	12.95	8.5	19.47	11.05	18.59	10.96
Merged-chr8-11479267-5	chr8	11479209	11479409	+	973.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-810.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	12.52	13.58	25.1	14.48	12.68	18.19	15.61	20.13	13.96	12.05	13.06	11.28
Merged-chr13-23799553-3	chr13	23799462	23799662	+	973.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7465.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	18.98	13.33	33.09	37.0	33.96	17.87	33.88	45.81	20.06	10.04	26.63	12.22
Merged-chr4-47378885-3	chr4	47378785	47378985	+	973.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312868, intron 1 of 8)	MTC|LTR|ERVL-MaLR	-7331.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	16.56	9.81	18.25	18.1	11.45	14.42	20.93	26.69	26.36	21.09	20.6	19.42
Merged-chr8-81345353-2	chr8	81345264	81345464	+	973.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	2802.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	10.9	13.83	15.97	9.65	15.14	14.74	3.99	17.36	0.0	0.0	0.0	0.94
Merged-chr3-145938522-2	chr3	145938432	145938632	+	973.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025555, intron 1 of 2)	CpG	518.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	11.31	16.85	19.97	16.89	14.32	22.89	18.27	19.21	20.26	22.59	29.14	8.46
Merged-chr17-63499730-7	chr17	63499506	63499706	+	973.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	974.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	8.88	13.33	10.84	8.04	23.32	14.42	25.58	12.53	22.42	15.06	31.15	10.34
Merged-chr2-6213161-4	chr2	6213074	6213274	+	973.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024208)	promoter-TSS (NM_024208)	-180.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	18.98	17.61	10.27	16.09	14.32	17.56	13.29	15.93	12.59	17.57	16.58	8.14
Merged-chr18-61643872-3	chr18	61643785	61643985	+	973.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	4009.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	16.56	15.59	11.41	13.67	18.41	21.95	8.64	18.64	35.6	33.14	31.15	22.87
Merged-chr14-25474158-3	chr14	25474067	25474267	+	973.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14982.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	18.57	15.59	18.25	16.49	31.5	8.78	8.3	21.84	27.93	28.12	19.6	11.9
Merged-chr2-127323146-3	chr2	127323035	127323235	+	973.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13024.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	32.71	35.21	35.37	13.67	18.0	34.18	29.23	15.5	69.82	57.24	61.81	26.63
Merged-chr7-101538728-3	chr7	101538630	101538830	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17072.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	19.38	17.1	17.68	13.67	18.82	26.97	10.3	15.84	18.49	31.13	16.58	15.35
Merged-chr18-34963632-3	chr18	34963536	34963736	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9285.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	21.0	10.06	16.54	12.07	30.68	23.52	20.59	11.44	58.22	47.2	61.81	34.46
Merged-chr12-3698193-3	chr12	3698100	3698300	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	B4|SINE|B4	-108780.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	22.21	16.85	28.52	18.1	22.91	21.64	26.91	37.26	24.78	11.55	40.2	21.62
Merged-chr7-111383881-3	chr7	111383780	111383980	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-261205.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	22.21	22.13	23.96	24.94	17.59	31.04	6.64	22.77	45.83	41.67	58.29	30.7
Merged-chr11-93963194-2	chr11	93963087	93963287	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5334.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.8	13.09	19.44	9.3	14.02	35.6	43.68	45.22	29.45
Merged-chrX-12091948-3	chrX	12091865	12092065	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-11412.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	21.0	26.91	5.7	0.8	24.14	43.27	17.94	13.68	28.91	20.59	17.59	10.96
Merged-chr1-172552905-1	chr1	172552805	172553005	+	973.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2099.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	4.04	0.75	4.56	8.04	4.09	1.25	0.33	1.32	18.69	24.1	20.1	9.71
Merged-chr5-125380058-2	chr5	125379958	125380158	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9959.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	17.77	15.85	7.42	5.63	0.82	15.68	1.33	6.5	6.88	12.05	10.55	4.07
Merged-chr9-98329748-3	chr9	98329663	98329863	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33193.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	7.27	13.58	4.56	13.67	20.86	28.22	13.95	37.93	13.37	20.59	17.59	12.84
Merged-chrUn_JH584304-18227-1	chrUn_JH584304	18127	18327	+	973.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	41462.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.49	10.54	8.04	10.65
Merged-chr17-57277000-3	chr17	57276887	57277087	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2113.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	28.27	15.59	37.08	8.45	20.05	33.24	17.94	24.25	19.87	27.62	20.6	10.02
Merged-chr9-32020063-1	chr9	32019963	32020163	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-96073.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.04	2.52	5.13	5.23	4.09	2.82	7.31	8.55	0.39	1.51	3.01	2.51
Merged-chr14-118504631-1	chr14	118504531	118504731	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	87841.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	2.02	2.52	5.7	3.62	5.32	3.76	8.3	7.77	3.93	1.0	0.0	0.31
Merged-chr6-81986746-1	chr6	81986646	81986846	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-20797.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	6.86	2.26	0.0	4.83	4.5	6.9	3.65	8.5	4.92	8.54	1.0	5.33
Merged-chr7-118468349-1	chr7	118468249	118468449	+	973.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-20127.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.25	4.56	1.61	1.64	0.0	0.66	0.95	13.18	16.07	9.04	8.14
Merged-chr6-122602775-2	chr6	122602659	122602859	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-315.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.67	6.54	7.99	4.83	5.73	10.66	7.31	5.72	13.18	4.02	21.1	14.41
Merged-chr17-50345330-3	chr17	50345223	50345423	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-51703.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	11.71	9.56	20.54	21.32	20.46	17.25	31.89	31.12	14.55	6.53	23.11	23.18
Merged-chr18-75307042-3	chr18	75307078	75307278	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-9849.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	2.02	6.54	6.28	6.03	3.27	10.66	5.65	6.9	2.16	7.03	4.52	4.39
Merged-chr7-3400092-1	chr7	3399992	3400192	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133190, intron 1 of 3)	MIR|SINE|MIR	6050.0	NM_133190	81905.0	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	4.44	17.1	11.98	16.49	2.45	1.57	0.66	1.46	9.44	2.51	21.1	5.33
Merged-chr1-84286933-1	chr1	84286833	84287033	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	6.06	6.79	1.14	7.24	6.55	10.35	3.32	7.49	4.52	8.03	8.04	5.33
Merged-chr8-125543321-2	chr8	125543198	125543398	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	26565.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	7.67	16.35	19.97	14.08	19.64	18.5	25.24	25.23	4.72	2.01	1.51	6.27
Merged-chr11-97428289-3	chr11	97428184	97428384	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21876.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	29.48	24.15	35.37	28.15	38.46	33.55	23.25	39.73	28.72	22.59	34.67	10.34
Merged-chr13-104610621-4	chr13	104610563	104610763	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	206290.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	12.11	7.8	6.28	19.71	12.68	15.37	7.31	19.54	12.39	26.11	28.64	16.92
Merged-chr2-19415204-3	chr2	19415119	19415319	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30444.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	12.52	12.83	15.4	12.87	13.91	18.81	12.95	19.29	14.36	23.6	24.62	31.95
Merged-chr19-56797543-3	chr19	56797442	56797642	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_170757, exon 11 of 15)	exon (NM_170757, exon 11 of 15)	16141.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	16.15	20.12	24.53	33.78	25.77	28.85	14.28	39.06	23.21	14.56	22.11	17.54
Merged-chr18-5680340-3	chr18	5680214	5680414	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	Lx9|LINE|L1	87667.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.65	14.59	20.54	17.7	17.18	25.09	16.61	22.77	16.13	14.06	29.65	17.23
Merged-chr10-81175185-3	chr10	81175106	81175306	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	21.0	9.06	17.11	14.88	18.82	9.72	11.63	17.02	28.52	21.59	26.13	15.98
Merged-chr1-170959973-3	chr1	170959884	170960084	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010187)	TTS (NM_010187)	16087.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	17.77	10.31	33.66	30.16	30.27	17.87	15.94	31.18	21.44	20.59	25.63	24.12
Merged-chr3-9342262-2	chr3	9342160	9342360	+	972.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60818.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	13.33	16.1	11.98	22.52	20.86	14.74	15.61	18.53	2.95	1.51	2.51	2.19
Merged-chr10-44457332-2	chr10	44457218	44457418	+	972.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	1430.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.27	4.02	6.85	16.09	11.86	16.93	22.26	21.64	14.55	11.05	18.09	13.16
Merged-chr9-40743834-3	chr9	40743686	40743886	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-57487.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	50.47	22.64	38.79	25.34	61.37	50.8	48.83	47.41	11.41	9.54	8.04	9.4
Merged-chr2-6721188-3	chr2	6721108	6721308	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	454.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	25.44	16.85	23.39	24.94	19.23	15.68	7.97	25.49	16.72	26.61	25.12	24.43
Merged-chr5-148739330-3	chr5	148739239	148739439	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2501.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	10.5	12.07	13.12	11.26	28.23	26.34	23.92	19.21	93.43	99.92	126.63	57.33
Merged-chr14-30043513-3	chr14	30043411	30043611	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 45 of 46)	intron (NM_001083616, intron 45 of 46)	20878.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	29.07	18.36	30.8	28.56	16.77	15.68	12.62	17.24	31.67	13.05	30.65	18.17
Merged-chr2-50539959-3	chr2	50539855	50540055	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	184930.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	8.08	14.59	15.97	37.4	23.73	21.01	18.93	27.28	30.49	22.09	35.17	21.3
Merged-chr5-122209955-2	chr5	122209860	122210060	+	972.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028752)	promoter-TSS (NM_028752)	-179.0	NM_001359454	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	14.54	16.35	13.12	16.49	15.14	17.56	17.27	10.93	2.16	14.06	8.54	6.58
Merged-chr15-84685670-2	chr15	84685571	84685771	+	972.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146061, intron 1 of 7)	intron (NM_146061, intron 1 of 7)	4673.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	23.42	25.15	27.38	24.13	24.55	18.81	9.3	23.89	6.49	7.53	11.05	7.83
Merged-chr10-80420827-2	chr10	80420748	80420948	+	972.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164153, intron 5 of 18)	intron (NM_001164153, intron 5 of 18)	12805.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	5.65	5.28	5.7	7.24	10.23	10.35	12.29	27.45	15.34	4.02	18.09	15.66
Merged-chr10-21827621-3	chr10	21827514	21827714	+	972.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54570.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	27.05	30.69	26.81	9.65	43.36	70.55	28.57	24.95	59.2	54.73	51.25	20.05
Merged-chr5-135913413-3	chr5	135913303	135913503	+	972.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	MTD|LTR|ERVL-MaLR	21238.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	19.79	13.08	26.81	16.89	27.41	24.15	16.28	33.22	16.92	6.53	15.07	12.22
Merged-chr4-40823781-3	chr4	40823679	40823879	+	972.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	26359.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	9.29	10.82	15.4	5.63	19.23	32.93	10.96	18.62	19.67	37.66	21.1	11.9
Merged-chr2-62461001-3	chr2	62460887	62461087	+	972.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22666.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	20.59	17.1	12.55	12.47	18.41	30.42	11.29	10.51	31.47	18.58	20.6	14.1
Merged-chr19-47461641-2	chr19	47461536	47461736	+	972.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	2775.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	21.8	11.32	36.51	39.01	54.41	56.13	53.81	63.84	6.1	5.02	6.03	3.76
Merged-chr7-122257021-4	chr7	122256971	122257171	+	972.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32054.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	10.09	13.08	10.27	11.26	8.59	8.47	4.32	9.42	6.69	7.53	11.05	10.34
Merged-chr7-67985219-3	chr7	67985118	67985318	+	972.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	L1MB3|LINE|L1	32961.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	16.56	13.83	5.7	27.75	40.5	30.73	19.27	35.64	14.75	9.54	22.61	15.04
Merged-chr2-71315518-3	chr2	71315430	71315630	+	972.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	52024.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	22.21	18.11	47.92	25.34	22.09	11.92	23.58	26.75	18.1	20.08	23.62	17.86
Merged-chr12-85424064-3	chr12	85423949	85424149	+	972.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49332.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	41.19	31.19	29.09	11.66	35.18	60.83	11.29	17.89	64.12	46.7	44.72	28.19
Merged-chr11-115192338-3	chr11	115192244	115192444	+	972.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	4857.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	14.54	15.85	13.69	16.09	36.82	33.24	23.25	43.15	50.55	32.64	48.74	33.52
Merged-chr6-134115149-3	chr6	134115059	134115259	+	972.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	79459.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	23.82	25.4	29.66	17.29	15.96	16.93	9.97	22.46	23.8	18.58	38.69	9.4
Merged-chr14-120324472-3	chr14	120324386	120324586	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	18034.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.86	15.59	26.24	26.14	25.36	11.29	21.92	22.85	34.42	27.11	27.13	26.31
Merged-chr2-32590407-3	chr2	32590304	32590504	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	3326.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	16.15	9.81	31.95	10.05	25.36	17.87	18.27	22.99	18.49	14.06	40.7	19.11
Merged-chr12-52851003-3	chr12	52850912	52851112	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151629.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	16.56	26.16	22.82	33.78	6.95	22.58	4.32	9.93	20.26	18.08	19.6	11.9
Merged-chr5-136949724-3	chr5	136949606	136949806	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3569.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	10.09	19.37	29.66	7.64	42.96	58.64	29.23	33.59	54.68	43.18	46.73	15.35
Merged-chr18-55146881-3	chr18	55146782	55146982	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154291.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	11.31	12.58	15.4	15.28	31.5	18.19	36.21	51.22	39.34	36.65	65.32	32.89
Merged-chr11-75655378-1	chr11	75655278	75655478	+	972.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-637.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	7.27	4.78	3.99	3.22	3.27	7.53	15.61	9.67	11.41	15.06	16.58	10.96
Merged-chr2-75613266-3	chr2	75613100	75613300	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46059.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	21.0	10.31	5.7	6.44	10.64	13.8	9.63	7.68	18.88	26.61	23.11	19.74
Merged-chrX-21690944-1	chrX	21690844	21691044	+	972.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23956.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	8.88	3.02	7.99	8.04	11.05	13.17	5.98	20.78	11.8	3.51	6.53	1.25
Merged-chr1-121508930-3	chr1	121508835	121509035	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010483)	TTS (NM_010483)	19530.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	12.92	27.92	32.52	35.8	10.23	30.42	12.29	23.78	34.03	30.63	34.17	20.05
Merged-chr19-16128933-3	chr19	16128830	16129030	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3901.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	26.25	20.88	27.38	25.74	15.14	26.65	11.29	14.44	21.64	21.59	23.62	19.11
Merged-chr17-71684433-3	chr17	71684342	71684542	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	11181.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	46.84	42.01	34.23	14.08	22.09	42.96	20.93	21.95	20.26	26.61	28.14	10.02
Merged-chr2-180104586-3	chr2	180104492	180104692	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-185.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	21.4	12.32	18.83	21.72	26.59	21.64	13.62	26.55	17.9	18.58	34.67	11.28
Merged-chr13-94381600-3	chr13	94381491	94381691	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	22631.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	16.15	20.12	23.39	20.51	11.05	9.41	12.29	22.85	28.32	16.07	20.6	10.96
Merged-chr8-104395878-3	chr8	104395829	104396029	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153582)	promoter-TSS (NM_153582)	-122.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	13.33	18.61	10.27	21.72	24.55	10.35	18.6	15.56	14.55	17.07	28.14	13.78
Merged-chr11-95896619-1	chr11	95896519	95896719	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008081, intron 1 of 10)	intron (NM_008081, intron 1 of 10)	18252.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	12.52	24.4	19.97	23.33	1.23	1.57	10.63	1.29	4.92	5.52	3.52	5.64
Merged-chr3-109027276-2	chr3	109027171	109027371	+	972.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163567, exon 1 of 11)	exon (NM_001163567, exon 1 of 11)	336.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	11.71	16.35	4.56	4.02	15.14	9.41	8.3	11.27	12.19	10.54	7.03	5.01
Merged-chr16-30550534-3	chr16	30550443	30550643	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172614)	promoter-TSS (NM_172614)	35.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	21.0	16.85	27.38	15.69	17.59	22.26	23.58	21.45	18.49	18.58	16.08	16.92
Merged-chr11-20251422-3	chr11	20251330	20251530	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2006.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	18.98	16.6	28.52	15.28	11.45	15.05	8.3	15.45	30.49	25.11	25.12	12.22
Merged-chr4-93551288-3	chr4	93551204	93551404	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-215793.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	13.73	19.37	49.63	64.75	13.91	5.33	20.26	24.67	20.06	4.02	21.61	15.35
Merged-chr15-50705474-3	chr15	50705386	50705586	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	B3A|SINE|B2	183563.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	12.11	10.31	14.83	18.5	30.68	31.36	33.55	36.25	30.29	13.56	26.13	16.6
Merged-chr13-49292127-3	chr13	49292020	49292220	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 3 of 17)	L1M4c|LINE|L1	17088.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	22.61	26.16	39.93	45.05	16.77	22.26	19.27	34.12	37.57	13.56	20.1	21.93
Merged-chr7-100875937-3	chr7	100875828	100876028	+	972.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 20 of 20)	intron (NM_001081116, intron 20 of 20)	6481.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	17.36	13.08	29.09	10.86	20.86	17.87	13.95	15.76	21.44	20.08	24.62	27.25
Merged-chr2-150841249-3	chr2	150841041	150841241	+	972.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	1429.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.88	14.84	2.28	23.73	9.0	11.6	8.97	14.97	18.49	12.55	19.6	10.65
Merged-chr17-34325320-2	chr17	34325227	34325427	+	972.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033978)	promoter-TSS (NM_001033978)	-348.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	14.13	22.39	24.53	19.31	2.05	3.76	0.66	0.06	33.63	25.61	34.67	16.92
Merged-chr1-180401339-3	chr1	180401235	180401435	+	972.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-70786.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	17.77	14.84	22.82	22.12	27.41	27.28	13.29	29.13	28.91	16.57	37.69	10.96
Merged-chr6-72549159-3	chr6	72549058	72549258	+	972.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271395)	promoter-TSS (NM_001271395)	-115.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	17.77	25.66	16.54	7.64	43.77	59.89	34.88	36.81	43.86	61.76	41.71	21.3
Merged-chr14-75832179-3	chr14	75832078	75832278	+	972.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	12786.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	12.92	13.33	25.67	22.93	12.27	25.71	11.63	15.95	31.27	32.64	63.31	32.58
Merged-chr1-98095611-3	chr1	98095514	98095714	+	972.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013626)	promoter-TSS (NM_013626)	18.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	17.36	15.85	10.84	32.98	35.59	30.1	38.53	62.08	18.29	22.09	39.19	10.34
Merged-chr5-52677341-3	chr5	52677236	52677436	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7635.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	26.65	12.83	29.09	18.1	63.41	84.04	51.49	77.83	20.26	23.1	33.67	13.16
Merged-chr11-95688631-3	chr11	95688533	95688733	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21676.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	26.25	15.59	24.53	28.15	25.77	26.03	16.94	27.56	19.28	28.12	11.56	22.24
Merged-chr7-99782168-3	chr7	99782076	99782276	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15012.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	15.34	12.83	14.83	17.7	23.32	18.81	10.96	12.73	21.44	12.55	21.1	12.22
Merged-chr2-113656094-3	chr2	113655996	113656196	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-28994.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	12.11	13.58	27.38	35.39	45.0	40.14	42.52	60.2	37.76	34.65	51.76	19.11
Merged-chr6-84015433-3	chr6	84015340	84015540	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3946.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	21.4	28.67	30.8	14.48	8.59	21.01	2.99	15.42	19.67	24.6	19.09	14.72
Merged-chr10-12871296-1	chr10	12871196	12871396	+	972.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	-9561.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.81	0.5	1.14	0.8	0.82	1.57	0.0	0.0	20.26	14.06	22.11	13.47
Merged-chr2-93435108-3	chr2	93435022	93435222	+	972.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13115.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	16.15	26.41	43.35	14.08	40.91	50.8	48.5	45.08	27.54	19.08	29.65	16.92
Merged-chr11-119091587-4	chr11	119091523	119091723	+	972.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5386.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	14.54	11.82	11.41	9.65	11.45	20.07	15.94	11.61	21.05	17.57	17.59	12.22
Merged-chr4-141623956-3	chr4	141623854	141624054	+	972.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013780)	promoter-TSS (NM_001013780)	-120.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	21.0	15.34	23.39	16.49	27.0	8.78	15.61	16.77	19.87	19.08	18.59	19.42
Merged-chr3-88436934-3	chr3	88436813	88437013	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163491, exon 15 of 15)	exon (NM_001163491, exon 15 of 15)	4038.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	24.23	15.34	17.11	9.65	31.5	36.37	20.59	27.48	30.29	28.12	26.13	9.71
Merged-chrX-93655336-3	chrX	93655245	93655445	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177546, intron 1 of 7)	intron (NM_177546, intron 1 of 7)	482.0	NM_177546	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	17.36	14.84	13.69	14.48	18.82	18.5	11.63	22.77	20.06	26.11	20.6	19.74
Merged-chr8-72487179-3	chr8	72487081	72487281	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	5433.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	18.57	20.88	28.52	12.87	25.36	21.01	14.95	19.77	27.73	23.6	27.13	15.04
Merged-chr9-77825859-3	chr9	77825743	77825943	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71308.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	14.13	5.53	17.68	10.86	19.64	19.44	16.94	34.68	20.65	15.06	26.13	20.68
Merged-chr8-120737502-3	chr8	120737453	120737653	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008320, intron 1 of 8)	intron (NM_008320, intron 1 of 8)	-1086.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	16.96	12.07	12.55	22.52	9.82	12.86	20.93	26.33	18.29	9.04	24.12	11.59
Merged-chr7-55784737-3	chr7	55784635	55784835	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-9390.0	NM_001360874	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	20.19	16.35	29.09	39.01	26.18	19.76	19.6	42.08	11.01	11.55	20.6	16.92
Merged-chr13-54306250-3	chr13	54306159	54306359	+	972.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65090.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	29.88	41.25	39.93	11.66	42.14	42.96	30.23	19.96	59.4	79.83	94.97	42.6
Merged-chr3-52634560-3	chr3	52634474	52634674	+	972.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105150.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	17.77	17.61	24.53	22.93	30.68	29.48	33.22	30.34	21.44	23.1	27.13	7.52
Merged-chr17-24707636-3	chr17	24707534	24707734	+	972.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	19.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	44.82	32.95	31.95	22.12	29.46	27.59	10.3	19.65	43.47	47.7	30.15	28.82
Merged-chr16-31938582-3	chr16	31938462	31938662	+	972.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 1 of 2)	MT2B|LTR|ERVL	4711.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	12.11	12.32	22.25	11.66	10.23	20.07	10.96	12.59	16.13	17.57	27.13	8.77
Merged-chr7-74554981-3	chr7	74554880	74555080	+	972.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-200.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	10.5	15.85	19.4	14.88	15.14	4.7	15.61	11.36	17.11	16.57	20.6	8.77
Merged-chr3-87332182-2	chr3	87332062	87332262	+	972.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-25719.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.25	13.83	1.71	4.42	8.59	15.37	24.25	14.83	24.39	12.55	17.08	9.08
Merged-chr2-48270506-2	chr2	48270413	48270613	+	972.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-543596.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.42	0.0	2.28	5.63	3.68	10.03	9.3	15.53	13.37	7.03	22.11	15.04
Merged-chr17-87746427-3	chr17	87746324	87746524	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199251, exon 2 of 2)	exon (NM_199251, exon 2 of 2)	51570.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	10.09	11.32	15.97	13.27	10.64	15.68	3.99	12.14	16.92	20.59	5.53	6.58
Merged-chr2-153163679-3	chr2	153163590	153163790	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	2389.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	13.33	15.34	18.25	14.88	21.68	24.77	7.64	12.98	19.87	24.1	14.07	4.39
Merged-chr2-102700917-3	chr2	102700804	102701004	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-5534.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.06	11.32	18.83	14.08	21.27	22.58	24.25	28.46	16.52	11.05	20.1	14.41
Merged-chr3-144561746-3	chr3	144561657	144561857	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	8459.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	18.57	17.1	9.13	33.38	15.14	18.19	22.59	41.58	31.67	17.57	44.72	25.37
Merged-chr1-155075175-3	chr1	155075108	155075308	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	8056.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.23	10.31	7.99	11.66	18.82	21.95	13.29	9.36	12.78	24.1	9.55	7.83
Merged-chr12-4133122-1	chr12	4133022	4133222	+	972.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159536)	promoter-TSS (NM_001159536)	-275.0	NM_001159537	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	5.65	5.03	3.42	10.46	3.27	11.92	11.63	14.05	6.29	4.02	3.01	2.82
Merged-chr7-135652949-3	chr7	135652851	135653051	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-637.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	12.92	15.34	26.81	10.86	24.55	19.44	13.62	16.77	20.85	19.58	18.59	18.17
Merged-chr15-91178843-3	chr15	91178740	91178940	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 4 of 9)	intron (NM_011994, intron 4 of 9)	13167.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	15.34	10.31	23.96	18.9	20.46	11.29	26.24	39.42	26.55	18.08	19.6	17.54
Merged-chr17-34924567-3	chr17	34924464	34924664	+	972.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023557, intron 13 of 20)	PB1D10|SINE|Alu	-6689.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	22.21	8.8	16.54	10.05	13.91	15.99	5.98	9.84	24.39	19.08	18.59	21.62
Merged-chr10-12963603-3	chr10	12963495	12963695	+	972.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	664.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	24.23	13.83	11.98	22.12	31.91	26.03	21.26	18.59	33.44	34.65	27.13	11.28
Merged-chr5-118155344-3	chr5	118155177	118155377	+	972.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172721, exon 1 of 11)	exon (NM_172721, exon 1 of 11)	181.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	6.06	11.07	10.27	10.86	7.77	10.35	15.28	8.33	12.78	14.06	12.56	10.96
Merged-chr16-91359554-3	chr16	91359460	91359660	+	972.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13223.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	23.82	12.83	13.12	10.86	40.5	34.81	22.92	22.18	26.55	30.63	22.61	14.1
Merged-chr13-102899449-3	chr13	102899359	102899559	+	972.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	139204.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	27.05	31.69	33.66	45.45	25.36	11.92	20.59	32.33	35.8	11.55	21.61	26.0
Merged-chr6-125071308-3	chr6	125071248	125071448	+	972.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163268)	promoter-TSS (NM_001163268)	71.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	6.46	11.32	23.39	19.71	9.41	18.81	13.62	16.77	16.92	6.53	12.06	15.98
Merged-chr13-94154666-2	chr13	94154553	94154753	+	972.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	96857.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.25	4.78	3.99	3.22	25.77	20.7	26.24	31.96	15.34	17.07	14.57	13.47
Merged-chr2-129914359-1	chr2	129914259	129914459	+	972.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97981.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	4.85	0.5	2.28	5.63	13.91	12.23	5.31	8.83	3.93	2.01	6.03	0.31
Merged-chr13-59906389-3	chr13	59906293	59906493	+	972.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-83246.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	10.5	22.39	30.23	21.32	15.55	25.09	23.92	37.82	31.08	23.1	40.2	25.69
Merged-chr6-16898530-3	chr6	16898425	16898625	+	972.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031198)	promoter-TSS (NM_031198)	-84.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	19.38	15.34	15.4	16.89	22.5	37.0	11.63	10.23	22.82	38.66	20.6	7.52
Merged-chr5-125348639-3	chr5	125348533	125348733	+	972.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7539.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	17.36	15.09	18.83	12.47	23.32	31.04	10.96	22.21	24.98	13.56	21.61	19.11
Merged-chr19-21713695-4	chr19	21713652	21713852	+	972.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20D|LTR|ERVK	60443.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	25.44	23.14	29.09	33.38	75.28	33.24	22.26	42.14	55.86	42.18	66.83	27.57
Merged-chr3-95818862-3	chr3	95818783	95818983	+	972.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	70.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	21.0	17.1	21.68	9.25	19.23	15.68	10.96	13.65	18.1	24.1	27.13	15.04
Merged-chr1-43500313-3	chr1	43500214	43500414	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	54563.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	12.92	11.32	20.54	20.51	16.77	14.74	18.27	23.55	47.8	26.11	31.15	29.13
Merged-chr1-176801093-3	chr1	176800985	176801185	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	6039.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	21.8	19.62	27.38	18.1	19.23	16.62	14.28	31.96	22.82	12.05	25.63	19.11
Merged-chr11-43682583-3	chr11	43682480	43682680	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164231, exon 1 of 4)	exon (NM_001164231, exon 1 of 4)	582.0	NM_001164231	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	14.54	21.38	13.69	30.16	18.82	13.8	28.23	23.33	17.31	34.14	37.69	19.11
Merged-chr12-73054067-3	chr12	73053982	73054182	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7370.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	14.54	16.1	27.95	25.34	22.91	21.64	9.63	32.66	13.18	10.04	17.59	11.59
Merged-chr1-184049053-6	chr1	184048961	184049161	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14680.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	10.09	9.81	5.13	6.03	9.0	9.41	8.97	5.33	8.85	13.56	9.55	13.16
Merged-chr4-86902611-3	chr4	86902512	86902712	+	972.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	28198.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	30.69	30.69	68.45	66.36	49.09	23.52	47.5	65.19	27.34	13.05	57.79	35.4
Merged-chr13-52981108-4	chr13	52981021	52981221	+	972.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-82.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	14.13	10.06	21.11	10.86	34.77	22.89	13.62	15.84	51.34	34.65	50.25	20.05
Merged-chr16-24137494-3	chr16	24137402	24137602	+	972.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54812.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	18.98	11.82	7.99	16.89	22.91	30.42	10.63	12.48	24.0	17.57	19.09	12.53
Merged-chr5-140418836-3	chr5	140418716	140418916	+	972.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	-489.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	27.46	19.87	21.11	26.55	20.86	22.26	24.58	17.3	26.36	29.62	15.58	28.19
Merged-chr2-13575599-3	chr2	13575460	13575660	+	972.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011701, exon 2 of 9)	exon (NM_011701, exon 2 of 9)	1249.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	10.9	9.81	9.13	13.67	20.86	9.41	9.3	19.77	19.47	16.57	17.08	10.34
Merged-chr4-133615688-2	chr4	133615585	133615785	+	972.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	-13517.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	12.11	11.32	29.66	20.51	29.05	14.42	41.19	50.78	0.59	3.01	3.01	0.63
Merged-chr8-105564924-3	chr8	105564790	105564990	+	972.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	B2_Mm1t|SINE|B2	1174.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	21.8	15.85	19.4	17.29	20.05	20.38	7.64	10.71	22.82	14.06	20.1	18.48
Merged-chr10-94578151-3	chr10	94578031	94578231	+	972.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	1868.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	18.57	23.39	14.83	13.67	59.32	54.25	48.16	49.68	24.59	39.16	25.12	9.08
Merged-chr15-36648043-3	chr15	36647927	36648127	+	972.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39054.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	13.73	16.85	17.68	21.32	20.46	11.29	8.64	10.21	23.8	22.09	28.14	23.18
Merged-chr19-11804625-3	chr19	11804530	11804730	+	972.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	14773.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	11.71	19.62	26.81	36.2	27.41	31.98	30.56	30.22	15.34	28.12	38.69	21.93
Merged-chr5-25087162-1	chr5	25087062	25087262	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	13480.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.83	1.76	3.42	1.61	7.36	6.27	3.32	10.37	1.97	2.51	3.52	7.83
Merged-chr19-5490019-1	chr19	5489919	5490119	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-436.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	16.96	11.82	10.84	0.4	4.91	11.29	2.99	2.55	18.29	20.08	12.06	13.47
Merged-chr9-70761226-3	chr9	70761127	70761327	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	82245.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	7.67	11.82	13.12	17.7	19.23	13.8	20.59	18.28	20.65	23.6	24.12	8.77
Merged-chr3-126663583-3	chr3	126663461	126663661	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	66610.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	15.75	23.64	20.54	19.71	24.14	10.66	24.58	36.5	13.37	15.06	13.57	13.16
Merged-chr19-9989175-1	chr19	9989075	9989275	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011913, exon 9 of 12)	exon (NM_011913, exon 9 of 12)	6529.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	2.83	11.32	2.28	3.62	11.86	18.5	2.99	2.05	7.47	9.04	7.54	1.88
Merged-chr15-63155930-1	chr15	63155830	63156030	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	323678.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.21	0.5	5.7	3.22	1.64	0.94	7.64	9.81	3.15	0.5	3.01	0.0
Merged-chr6-67102808-1	chr6	67102708	67102908	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65401.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	4.04	1.01	2.85	2.82	2.86	1.88	11.29	5.89	1.38	4.02	3.01	4.39
Merged-chr6-92988400-2	chr6	92988301	92988501	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47819.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	17.36	11.82	11.98	20.11	102.68	98.78	87.36	128.92	5.31	3.01	2.51	2.19
Merged-chr8-111562620-3	chr8	111562525	111562725	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	24282.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	22.61	20.63	20.54	19.71	48.27	31.36	9.97	24.45	31.47	17.07	27.64	14.72
Merged-chr1-52817760-3	chr1	52817662	52817862	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008384)	promoter-TSS (NM_008384)	-74.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	12.92	12.58	21.11	15.28	29.46	25.09	24.25	25.49	14.36	18.08	25.12	10.02
Merged-chr1-170885462-3	chr1	170885355	170885555	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356485)	promoter-TSS (NM_001356485)	85.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	37.55	21.13	23.39	23.73	12.68	29.16	14.95	21.39	18.88	18.08	31.66	15.35
Merged-chr19-7558885-2	chr19	7558796	7558996	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362425, intron 2 of 4)	intron (NM_001362425, intron 2 of 4)	1411.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	9.69	13.83	14.26	7.64	5.73	7.84	3.65	2.36	15.93	12.55	7.54	2.82
Merged-chr9-5357061-1	chr9	5356961	5357161	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11585.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	2.02	1.01	2.28	2.41	14.32	0.63	9.97	9.45	8.06	7.03	15.07	3.13
Merged-chr3-25721737-1	chr3	25721637	25721837	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357095, intron 4 of 6)	intron (NM_001357095, intron 4 of 6)	432249.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	1.14	0.0	4.91	8.15	1.99	13.65	4.92	11.55	3.01	4.39
Merged-chr17-81706776-3	chr17	81706677	81706877	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	31610.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	23.82	15.59	9.13	26.55	15.14	20.7	20.26	20.27	35.01	44.69	20.1	18.17
Merged-chr10-19008666-2	chr10	19008558	19008758	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	3305.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	10.5	11.32	1.71	7.24	8.18	9.72	0.33	2.44	11.8	5.02	4.02	4.7
Merged-chr1-131671315-3	chr1	131671209	131671409	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 7 of 9)	intron (NM_007799, intron 7 of 9)	-17386.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	48.86	42.01	46.21	45.05	11.45	10.98	3.99	16.12	47.6	38.16	72.86	36.34
Merged-chr6-73772192-1	chr6	73772092	73772292	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-301171.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.44	1.76	2.28	2.41	9.82	5.96	6.31	18.14	0.39	0.0	1.51	1.25
Merged-chr15-97908289-3	chr15	97908139	97908339	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009504)	promoter-TSS (NM_009504)	57.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	10.5	15.85	25.1	12.47	14.73	8.78	18.27	11.1	17.31	18.08	18.59	8.14
Merged-chr2-51147139-2	chr2	51147108	51147308	+	971.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	1903.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	14.13	10.06	11.98	10.05	15.14	9.09	5.65	12.22	8.46	10.54	11.56	3.13
Merged-chr5-43848459-3	chr5	43848348	43848548	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20361.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	16.15	11.07	13.69	15.69	18.0	14.42	12.62	26.66	17.9	13.05	20.6	16.29
Merged-chr8-13214092-3	chr8	13213973	13214173	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13449.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	10.9	12.83	19.4	12.47	17.59	21.01	13.62	19.91	21.64	27.11	23.11	14.41
Merged-chr5-140381335-3	chr5	140381222	140381422	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	7986.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	16.96	10.56	19.4	21.32	17.18	12.23	14.62	20.55	19.67	16.57	10.05	9.4
Merged-chr4-128785129-3	chr4	128785022	128785222	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	20990.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	13.33	15.34	14.26	18.9	18.41	18.5	10.3	26.94	34.42	24.6	34.67	10.96
Merged-chr11-26587752-3	chr11	26587654	26587854	+	971.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6166.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	27.86	27.92	38.79	42.63	7.36	25.4	17.94	28.15	20.26	19.58	18.59	4.7
Merged-chr14-20372042-3	chr14	20371935	20372135	+	971.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	16875.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	23.82	21.13	28.52	28.56	25.77	26.34	19.27	35.27	21.64	21.59	32.66	10.02
Merged-chr12-104751701-2	chr12	104751611	104751811	+	971.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148948, intron 1 of 26)	CpG	241.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	5.65	15.09	10.84	4.02	11.86	15.05	13.29	15.64	15.14	23.1	21.1	15.98
Merged-chr7-128312499-2	chr7	128312396	128312596	+	971.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14365.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	11.31	10.31	15.97	11.66	13.91	13.8	7.31	7.04	19.47	28.12	11.56	13.47
Merged-chr16-45757639-3	chr16	45757536	45757736	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357078, intron 13 of 16)	intron (NM_001357078, intron 13 of 16)	-14681.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	21.8	17.36	8.56	6.84	9.41	21.64	16.28	14.75	32.65	29.12	33.67	14.41
Merged-chr11-54089086-3	chr11	54089005	54089205	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11819.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	13.33	21.88	10.27	12.47	29.86	40.14	15.94	24.34	34.22	45.69	34.67	20.05
Merged-chr10-61143507-3	chr10	61143431	61143631	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	4153.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	18.17	18.61	14.83	18.5	21.27	14.11	8.3	31.01	17.51	21.59	17.08	13.16
Merged-chr15-67514251-3	chr15	67514147	67514347	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	287478.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	24.23	23.9	16.54	17.29	15.96	18.81	14.28	17.36	28.91	15.06	30.65	14.72
Merged-chr13-111788437-3	chr13	111788374	111788574	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	20519.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	14.13	17.36	9.13	14.08	20.86	19.13	29.56	21.53	18.49	14.56	26.63	9.08
Merged-chr5-29950610-2	chr5	29950514	29950714	+	971.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-62500.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.04	6.79	4.56	6.44	20.05	17.25	8.64	12.76	22.03	22.09	23.62	5.64
Merged-chr8-120742703-3	chr8	120742610	120742810	+	971.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	4071.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	22.21	20.12	33.09	32.18	32.73	20.07	33.88	45.28	18.29	14.56	41.2	34.15
Merged-chr3-31425584-2	chr3	31425490	31425690	+	971.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-115271.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.42	2.52	2.28	11.26	35.18	30.42	57.8	80.55	25.57	10.04	38.69	13.78
Merged-chr11-75654970-3	chr11	75654894	75655094	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1021.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	20.59	19.87	17.11	12.87	29.46	33.55	15.61	26.24	32.06	26.11	36.18	29.76
Merged-chr7-135768774-3	chr7	135768684	135768884	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52405.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	19.79	12.83	9.13	18.5	17.18	21.64	12.95	10.85	28.72	25.61	38.19	9.71
Merged-chr8-84989999-3	chr8	84989899	84990099	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-596.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	18.57	25.66	11.41	25.34	17.59	27.28	16.28	20.69	30.68	28.62	30.15	24.75
Merged-chr13-34082701-3	chr13	34082590	34082790	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4682.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	51.28	56.34	53.62	11.66	30.68	98.78	36.21	13.01	35.01	46.7	31.15	9.71
Merged-chr8-8334639-3	chr8	8334536	8334736	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	326137.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	11.31	9.81	23.96	18.9	15.55	15.99	12.62	25.29	23.6	29.12	31.66	19.11
Merged-chr8-70560295-3	chr8	70560187	70560387	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	20612.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	18.98	23.14	20.54	28.56	35.59	56.44	36.21	71.86	18.88	14.56	28.64	26.94
Merged-chr6-51468783-4	chr6	51468653	51468853	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	1141.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	14.94	11.57	3.42	16.09	6.14	8.47	12.29	11.24	11.41	24.6	10.55	14.72
Merged-chr8-70131312-3	chr8	70131212	70131412	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104434)	promoter-TSS (NR_104434)	-15.0	NR_104434	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	15.75	12.07	22.25	15.28	11.45	26.34	15.61	15.14	38.55	23.1	35.68	14.1
Merged-chr7-89309269-4	chr7	89309171	89309371	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	29516.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	10.9	8.8	4.56	10.86	12.68	6.9	17.61	17.92	15.14	11.55	18.59	14.41
Merged-chr8-125116745-3	chr8	125116659	125116859	+	971.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	62564.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	22.21	23.9	23.96	19.31	15.14	42.65	18.6	22.32	14.55	19.58	20.6	10.34
Merged-chr3-59206746-3	chr3	59206617	59206817	+	971.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4165.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	24.63	20.12	27.38	22.12	21.27	47.98	16.61	25.18	27.93	30.63	25.12	8.77
Merged-chr2-112284576-3	chr2	112284478	112284678	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133648)	promoter-TSS (NM_133648)	-110.0	NM_133648	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	12.52	8.8	3.99	16.89	15.96	21.64	19.27	21.39	22.42	26.11	35.17	18.8
Merged-chr2-168539238-3	chr2	168539150	168539350	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	MER3|DNA|hAT-Charlie	51115.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	36.75	25.4	55.33	39.01	39.68	26.34	46.5	50.24	16.92	15.57	32.66	17.54
Merged-chr12-77288706-3	chr12	77288621	77288821	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	49982.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	21.0	17.1	39.36	34.59	23.32	9.72	17.94	26.97	15.93	7.53	25.63	26.31
Merged-chr17-70974343-3	chr17	70974236	70974436	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023402, exon 4 of 4)	exon (NM_023402, exon 4 of 4)	16180.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	33.92	27.92	42.21	39.01	33.96	45.47	32.88	11.27	56.06	52.72	53.26	30.07
Merged-chr7-128418177-3	chr7	128418088	128418288	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026418)	promoter-TSS (NM_026418)	-16.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	20.19	20.37	19.97	23.33	10.23	14.74	17.61	21.28	16.33	13.56	17.59	17.54
Merged-chr14-54863602-3	chr14	54863491	54863691	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177705, intron 1 of 1)	intron (NM_001177705, intron 1 of 1)	567.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	13.33	18.36	6.85	7.24	15.14	30.1	8.97	7.01	13.57	4.02	14.07	4.07
Merged-chr15-79108967-4	chr15	79108873	79109073	+	971.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177461)	promoter-TSS (NM_177461)	-10.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	14.13	10.82	9.13	18.5	23.73	21.32	14.62	22.23	7.47	5.02	6.53	6.27
Merged-chr4-121197191-3	chr4	121197078	121197278	+	971.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	17906.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	36.34	23.39	26.81	45.85	36.82	37.32	20.59	30.79	31.47	25.11	44.22	10.96
Merged-chr12-95694119-3	chr12	95694013	95694213	+	971.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	1887.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	14.13	14.84	9.13	28.56	24.55	25.71	23.25	26.64	12.98	20.59	21.61	16.6
Merged-chr13-32802584-3	chr13	32802473	32802673	+	971.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030215, exon 1 of 7)	exon (NM_030215, exon 1 of 7)	543.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	15.75	13.83	21.68	18.9	19.23	20.07	12.62	12.62	15.54	25.11	11.56	12.84
Merged-chr9-107985277-3	chr9	107985164	107985364	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026597, intron 1 of 1)	intron (NM_026597, intron 1 of 1)	652.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	38.36	29.43	52.48	16.49	27.41	31.98	18.93	20.8	35.6	21.59	26.63	11.28
Merged-chr15-59802548-3	chr15	59802457	59802657	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7598.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	20.19	11.82	7.42	28.96	18.41	12.54	13.62	16.15	17.51	17.07	22.11	15.98
Merged-chr5-34762351-3	chr5	34762264	34762464	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	624.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	6.46	9.81	14.26	23.33	11.05	18.19	5.98	10.93	11.41	17.07	17.08	11.9
Merged-chr2-71866067-3	chr2	71865966	71866166	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 3 of 3).2	(T)n|Simple_repeat|Simple_repeat	-7158.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	47.65	30.69	30.8	39.82	32.73	37.32	33.88	48.81	28.72	14.56	22.61	14.72
Merged-chr2-32312418-3	chr2	32312329	32312529	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010065, intron 19 of 20)	CpG-7982	-5836.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	21.4	16.1	15.97	12.87	31.09	32.61	15.28	27.48	29.7	24.1	30.65	15.35
Merged-chr3-31232994-3	chr3	31232877	31233077	+	971.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172861, intron 4 of 7)	intron (NM_172861, intron 4 of 7)	77342.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	20.59	9.06	13.12	39.42	27.82	26.97	43.51	66.25	17.31	6.53	18.59	16.92
Merged-chr18-88952874-3	chr18	88952756	88952956	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-18934.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	19.79	12.58	12.55	36.2	27.0	15.99	31.89	40.32	21.24	15.06	21.61	14.41
Merged-chr2-4509935-3	chr2	4509791	4509991	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49863.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	10.5	15.59	14.83	18.9	23.32	24.46	11.96	29.69	21.24	21.09	22.61	20.05
Merged-chr17-46645733-3	chr17	46645639	46645839	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	341.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	20.59	19.37	7.42	15.69	28.64	19.13	15.61	12.25	32.65	22.59	26.63	13.16
Merged-chr11-118232291-3	chr11	118232208	118232408	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	16284.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	17.36	25.4	14.26	16.89	18.82	12.54	10.96	9.0	17.31	14.06	19.09	23.49
Merged-chr10-127165135-3	chr10	127165074	127165274	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	18.0	NM_001244617	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	23.42	12.07	8.56	11.66	9.0	23.83	18.27	12.39	26.95	13.05	16.58	10.96
Merged-chr10-43479167-3	chr10	43479094	43479294	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	54.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	14.13	11.82	13.69	11.66	20.46	17.25	15.28	15.93	33.44	21.59	29.14	13.47
Merged-chr6-29925745-3	chr6	29925659	29925859	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037740, intron 4 of 20)	intron (NM_001037740, intron 4 of 20)	8746.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	28.27	15.09	18.25	26.55	35.18	22.89	17.94	29.64	14.75	18.58	18.09	21.3
Merged-chr16-55754048-3	chr16	55753960	55754160	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68078.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	14.94	18.61	21.68	11.66	9.82	22.89	19.93	15.17	28.91	27.11	34.17	16.6
Merged-chr4-53111937-3	chr4	53111832	53112032	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47963.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.46	2.77	13.69	18.5	6.14	2.51	8.97	23.44	12.0	3.01	23.11	10.96
Merged-chr7-140954885-3	chr7	140954760	140954960	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030694)	TTS (NM_030694)	1101.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	14.13	9.56	19.97	10.46	25.36	11.29	16.94	8.58	23.8	17.57	45.22	14.72
Merged-chr11-77687383-4	chr11	77687290	77687490	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024205, intron 1 of 3)	CpG	1251.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	10.5	15.59	23.96	13.27	13.91	29.79	19.6	13.71	32.26	27.11	22.61	20.05
Merged-chr1-177470280-3	chr1	177470175	177470375	+	971.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24454.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	16.56	25.91	17.68	17.7	6.55	21.64	10.96	10.23	25.18	18.58	30.65	13.47
Merged-chr6-119360464-3	chr6	119360345	119360545	+	971.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355692, intron 4 of 7)	intron (NM_001355692, intron 4 of 7)	28289.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	10.09	22.89	20.54	16.49	21.68	25.09	8.64	20.72	20.85	20.08	22.11	12.22
Merged-chr5-54025823-3	chr5	54025738	54025938	+	971.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	27315.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	29.88	14.59	12.55	26.55	34.77	33.87	24.58	30.36	29.11	29.62	25.12	16.6
Merged-chr1-119893187-3	chr1	119893086	119893286	+	971.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	19982.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	16.15	19.62	19.97	13.67	15.96	22.26	16.61	19.91	27.34	11.55	20.1	4.39
Merged-chr1-195131640-3	chr1	195131516	195131716	+	971.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355061)	promoter-TSS (NM_001355061)	-46.0	NM_001355061	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	10.09	15.85	6.28	9.65	10.64	20.7	12.95	22.74	25.18	18.58	21.61	11.59
Merged-chr11-46820097-3	chr11	46819991	46820191	+	971.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	9292.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	36.75	32.45	46.78	49.47	52.77	37.63	100.98	85.6	48.58	26.61	55.78	7.83
Merged-chr17-36167801-2	chr17	36167696	36167896	+	971.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081032, intron 2 of 7)	CpG-6350	741.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	1.21	0.5	1.71	0.8	19.23	17.25	8.64	19.07	22.03	16.07	39.19	13.16
Merged-chr3-60516452-3	chr3	60516357	60516557	+	971.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	15278.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	21.4	13.83	19.4	8.85	13.5	17.87	3.99	16.85	19.08	18.58	19.6	15.35
Merged-chr18-54997745-3	chr18	54997634	54997834	+	971.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	11.71	15.85	14.83	21.72	14.73	14.42	11.63	15.31	23.8	35.15	37.69	7.83
Merged-chr8-18849530-3	chr8	18849419	18849619	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026792, intron 1 of 7)	intron (NM_026792, intron 1 of 7)	3240.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	5.65	6.04	18.25	12.47	4.5	10.03	12.29	10.46	17.11	16.07	19.09	15.04
Merged-chr5-64602110-3	chr5	64602000	64602200	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045078, exon 3 of 4)	non-coding (NR_045078, exon 3 of 4)	8599.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	13.33	12.83	23.39	12.07	23.73	18.5	13.62	15.73	18.1	16.07	21.61	15.66
Merged-chr13-90057852-3	chr13	90057723	90057923	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31785.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	27.05	27.92	38.79	54.7	11.45	10.98	25.58	27.76	16.33	5.02	20.6	15.35
Merged-chr3-149280977-3	chr3	149280883	149281083	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	6246.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	11.31	10.82	3.42	10.86	24.96	15.37	13.62	19.09	26.16	9.54	34.17	6.58
Merged-chr11-22859077-3	chr11	22858993	22859193	+	971.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	CpG	642.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	23.82	14.34	15.97	16.49	17.18	13.17	10.3	14.05	15.74	22.59	13.06	15.66
Merged-chr11-21079940-2	chr11	21079830	21080030	+	971.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11394.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.44	5.53	17.11	8.45	25.36	23.52	15.94	19.77	17.7	23.1	17.08	15.66
Merged-chr9-44326548-3	chr9	44326440	44326640	+	971.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	-305.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	19.79	10.06	9.13	14.48	13.91	15.37	12.62	14.36	22.03	14.06	19.09	16.29
Merged-chr7-16311005-4	chr7	16310861	16311061	+	971.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	1378.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	5.65	15.85	16.54	14.48	10.64	11.29	13.95	12.53	19.28	15.57	25.12	12.84
Merged-chr6-28864828-3	chr6	28864757	28864957	+	971.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-33110.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	29.48	39.49	21.68	8.85	26.59	71.49	20.93	10.35	34.03	34.65	24.62	11.28
Merged-chr18-39623378-2	chr18	39623280	39623480	+	971.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-136135.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.85	4.53	7.42	3.62	15.55	13.48	9.3	10.57	29.11	15.06	10.55	7.83
Merged-chr13-23730622-1	chr13	23730522	23730722	+	971.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8185.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	1.62	4.53	0.0	2.01	6.55	2.2	3.99	1.85	20.85	33.64	18.09	14.72
Merged-chr15-33186509-3	chr15	33186388	33186588	+	971.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	L1_Mus4|LINE|L1	103359.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	10.5	14.09	26.24	32.18	14.73	21.32	36.21	39.76	31.08	27.11	29.65	20.36
Merged-chr4-136894134-3	chr4	136894030	136894230	+	971.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1216.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	21.4	23.39	17.68	6.44	22.09	21.01	9.97	13.35	18.88	24.6	20.6	17.23
Merged-chr15-78247855-3	chr15	78247743	78247943	+	971.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3032.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	44.82	41.75	66.17	30.57	66.68	81.53	56.8	44.33	68.05	58.24	38.69	9.71
Merged-chr7-3617358-3	chr7	3617268	3617468	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025348)	promoter-TSS (NM_025348)	-5.0	NM_025348	66091.0	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	17.77	6.54	14.26	23.73	30.68	25.4	20.93	29.41	41.89	40.17	44.72	27.88
Merged-chr10-14531230-3	chr10	14531122	14531322	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	13814.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	23.42	10.56	13.69	13.67	31.91	36.69	37.87	40.51	44.84	45.69	51.76	20.36
Merged-chr4-105271397-3	chr4	105271318	105271518	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114071.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	15.34	12.58	18.83	12.87	18.0	14.11	14.62	17.75	31.27	23.6	30.65	16.6
Merged-chr5-72551404-3	chr5	72551307	72551507	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	8238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	44.42	23.9	38.22	26.14	35.59	69.61	42.19	36.84	36.78	30.63	22.61	10.34
Merged-chr11-50130911-3	chr11	50130799	50130999	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-461.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	33.11	19.62	14.83	13.67	27.41	21.01	20.93	18.48	29.9	41.17	17.59	15.66
Merged-chr19-56734208-3	chr19	56734127	56734327	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11855.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	23.42	18.86	17.11	19.31	28.23	29.16	23.92	31.35	25.77	13.05	37.18	17.54
Merged-chr17-78200800-3	chr17	78200670	78200870	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015800, exon 1 of 17)	exon (NM_015800, exon 1 of 17)	522.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	14.54	33.2	9.7	9.65	27.41	28.85	19.6	21.17	19.28	32.64	29.14	14.72
Merged-chr6-72544572-3	chr6	72544454	72544654	+	971.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271415)	promoter-TSS (NM_001271415)	17.0	NM_001271415	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.86	10.06	6.28	4.83	11.45	19.13	16.94	6.67	8.46	18.08	8.54	13.47
Merged-chr10-54054417-3	chr10	54054356	54054556	+	971.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	21340.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	14.94	23.9	5.7	6.03	8.59	29.79	7.64	8.24	9.05	15.57	4.52	2.51
Merged-chr19-32330401-3	chr19	32330287	32330487	+	971.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	18929.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	25.84	8.55	35.37	20.51	30.68	28.22	31.22	50.19	18.49	13.56	17.59	13.16
Merged-chr10-24640692-2	chr10	24640595	24640795	+	971.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	45253.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.85	5.53	3.42	10.05	11.05	13.8	12.29	23.41	14.95	11.55	20.1	5.95
Merged-chr17-12039415-3	chr17	12039298	12039498	+	971.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-79886.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	31.09	21.88	21.11	18.1	18.41	33.55	9.63	33.73	18.49	35.15	33.67	8.77
Merged-chr2-151996469-3	chr2	151996358	151996558	+	971.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027172)	promoter-TSS (NM_027172)	-53.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	21.8	18.36	13.12	22.12	35.59	35.75	18.6	27.87	34.42	28.62	38.19	30.07
Merged-chr12-99964537-3	chr12	99964448	99964648	+	971.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146037)	promoter-TSS (NM_146037)	49.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	12.52	16.85	7.99	22.12	24.96	19.44	21.92	24.73	20.65	14.06	30.65	17.86
Merged-chr9-106394871-1	chr9	106394771	106394971	+	971.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26239.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	1.01	0.0	0.8	0.0	1.88	0.33	0.2	18.49	5.52	16.58	12.22
Merged-chr9-40765176-1	chr9	40765076	40765276	+	971.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	B2_Mm2|SINE|B2	-36097.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.0	1.26	3.99	1.61	7.36	4.39	2.33	2.97	22.82	22.09	15.58	10.34
Merged-chr8-117298400-3	chr8	117298321	117298521	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	41402.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	20.19	16.85	22.25	20.91	25.77	24.46	19.6	41.55	18.29	17.07	17.59	10.02
Merged-chr1-7842647-2	chr1	7842546	7842746	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	753726.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	16.56	13.33	17.68	23.33	11.45	25.09	12.62	28.23	1.57	2.01	7.03	0.0
Merged-chr10-79985950-3	chr10	79985846	79986046	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1686.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	13.73	6.04	4.56	4.83	14.32	13.48	8.3	13.12	15.74	16.57	4.52	17.23
Merged-chr3-95706436-3	chr3	95706326	95706526	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-18509.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	11.71	21.13	33.66	18.1	41.73	28.22	30.56	57.42	25.37	28.62	39.19	24.75
Merged-chr2-22795575-3	chr2	22795476	22795676	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	RLTR13C1|LTR|ERVK	21249.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	23.02	24.15	26.24	19.31	18.82	29.48	16.94	8.44	32.85	44.69	39.19	16.6
Merged-chr7-12987379-1	chr7	12987279	12987479	+	971.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009512)	TTS (NM_009512)	9531.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	4.04	0.0	0.0	3.22	4.09	0.63	1.33	0.0	19.28	17.57	33.16	12.53
Merged-chr11-121748496-3	chr11	121748388	121748588	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46061.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	13.73	5.28	29.09	4.42	25.36	33.55	14.28	23.94	19.28	26.61	21.1	17.23
Merged-chr1-172500256-3	chr1	172500170	172500370	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	24.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	13.33	14.09	4.56	17.29	16.77	15.68	10.3	14.64	16.33	28.62	21.1	15.04
Merged-chr14-57910725-3	chr14	57910612	57910812	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20376.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	27.05	16.35	8.56	25.34	27.0	35.75	21.92	32.52	16.13	19.58	26.63	14.72
Merged-chr3-84884330-1	chr3	84884230	84884430	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	MTE2b|LTR|ERVL-MaLR	20185.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	15.75	12.07	15.4	13.67	20.86	12.86	11.63	15.25	14.95	17.57	26.63	16.29
Merged-chr9-57854466-3	chr9	57854371	57854571	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20237.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	25.84	17.1	22.82	14.08	27.0	21.64	18.93	19.01	33.04	26.61	23.62	15.04
Merged-chr8-57652878-3	chr8	57652804	57653004	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144731, exon 1 of 12)	exon (NM_144731, exon 1 of 12)	151.0	NM_001167981	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	18.17	19.12	25.1	24.94	20.86	11.92	26.91	21.42	20.06	17.07	19.09	19.74
Merged-chr1-166001630-3	chr1	166001505	166001705	+	971.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198932, intron 1 of 15)	CpG	1029.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	10.09	11.32	15.4	5.23	10.64	12.86	11.29	8.1	17.7	9.04	11.56	9.08
Merged-chr8-116980305-3	chr8	116980193	116980393	+	971.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1334.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	9.29	17.1	19.4	24.53	17.59	24.77	9.3	15.48	22.62	14.06	32.66	13.16
Merged-chr16-36939338-3	chr16	36939211	36939411	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	RLTR40|LTR|ERVK	4328.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	14.13	14.34	14.26	16.89	20.86	20.38	13.62	22.4	17.9	21.09	15.58	10.02
Merged-chrX-9467957-3	chrX	9467864	9468064	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 1 of 12)	intron (NM_007807, intron 1 of 12)	1360.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	10.9	9.56	15.97	14.08	33.55	17.25	18.27	13.04	26.36	26.61	37.69	13.16
Merged-chr12-101906041-3	chr12	101905931	101906131	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028446, intron 1 of 20)	intron (NM_028446, intron 1 of 20)	-6636.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	28.67	16.35	39.36	21.72	10.64	27.59	12.29	25.71	30.68	19.08	50.75	16.6
Merged-chr1-120524390-3	chr1	120524282	120524482	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19358.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	38.76	29.93	49.06	16.09	12.27	40.14	40.52	13.37	77.5	53.73	65.32	37.28
Merged-chr8-35643927-3	chr8	35643841	35644041	+	971.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-54921.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	27.86	19.37	46.21	24.13	28.64	26.03	40.86	61.54	20.46	9.54	28.14	14.1
Merged-chr18-79981140-1	chr18	79981040	79981240	+	971.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65755.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.23	4.53	9.7	7.24	15.55	9.41	22.26	22.04	1.18	2.51	1.51	1.57
Merged-chr7-106441160-2	chr7	106441049	106441249	+	971.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_003967)	promoter-TSS (NR_003967)	-76.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	13.33	11.57	17.68	20.11	34.77	15.99	18.27	31.6	0.39	0.0	1.0	0.94
Merged-chr1-100180239-3	chr1	100180147	100180347	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172851, intron 10 of 23)	L1Md_F2|LINE|L1	407482.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	98.93	128.78	114.09	128.3	29.86	34.81	39.86	1.49	23.41	41.67	31.15	64.22
Merged-chr4-98396096-3	chr4	98396001	98396201	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005784, intron 1 of 19)	CpG	275.0	NM_172696	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	23.42	12.83	17.11	26.95	24.55	26.34	14.28	31.4	21.24	13.56	27.13	10.96
Merged-chr5-114128249-3	chr5	114128154	114128354	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359940)	promoter-TSS (NM_001359940)	-36.0	NM_001359941	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	35.13	16.6	25.1	20.11	22.09	33.55	6.64	17.13	31.27	38.66	33.67	25.06
Merged-chr10-95298666-3	chr10	95298552	95298752	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	(A)n|Simple_repeat|Simple_repeat	25057.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	15.75	15.09	12.55	8.04	13.09	26.34	7.64	11.38	29.7	18.58	21.61	16.92
Merged-chr8-105259955-3	chr8	105259855	105260055	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033161, exon 3 of 5)	exon (NM_001033161, exon 3 of 5)	4639.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	11.31	13.33	17.68	16.09	18.0	14.42	12.95	11.94	14.16	12.05	15.07	11.28
Merged-chr6-129406208-3	chr6	129406119	129406319	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001204239)	TTS (NM_001204239)	-2643.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	14.13	9.81	22.25	34.99	15.96	15.99	35.21	42.28	30.49	29.12	48.74	28.51
Merged-chr8-88694496-3	chr8	88694402	88694602	+	971.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2526.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	16.96	9.31	4.56	6.84	29.05	20.7	6.98	16.79	26.55	21.59	20.6	10.34
Merged-chr14-69805488-5	chr14	69805352	69805552	+	971.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153514)	promoter-TSS (NM_153514)	93.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	17.36	13.08	7.42	8.45	14.73	25.09	11.29	13.68	27.54	25.11	34.17	8.77
Merged-chr2-181917641-3	chr2	181917578	181917778	+	971.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53318.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	18.57	22.64	13.12	10.05	20.05	11.6	13.62	13.71	7.67	18.08	19.09	27.57
Merged-chrX-71980653-3	chrX	71980578	71980778	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003243, intron 1 of 4)	RLTR28|LTR|ERVL	7692.0	NR_003243	77905.0	Mm.99811	NM_183127	ENSMUSG00000053593	Fate1	9230118O15Rik	fetal and adult testis expressed 1	pseudo	21.8	11.32	15.4	22.52	18.41	20.07	16.28	25.21	18.88	17.57	34.17	23.81
Merged-chr16-48832270-3	chr16	48832162	48832362	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10290.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	11.31	9.81	18.25	22.52	13.09	10.98	10.96	27.79	14.55	9.04	20.1	5.33
Merged-chr16-43209717-3	chr16	43209617	43209817	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	L1MD2|LINE|L1	-37567.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	29.88	21.63	11.41	30.57	19.64	22.89	23.25	51.34	20.46	29.12	39.7	18.17
Merged-chr5-4935318-3	chr5	4935194	4935394	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-177078.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	15.75	25.4	24.53	23.33	10.23	21.95	25.91	38.41	15.54	15.57	26.63	20.05
Merged-chr4-155206643-2	chr4	155206541	155206741	+	971.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	URR1B|DNA|hAT-Charlie	15894.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	11.31	17.36	34.8	23.73	7.77	7.53	3.65	1.26	21.64	21.09	34.17	20.99
Merged-chr4-86948978-2	chr4	86948877	86949077	+	971.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	74563.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	11.71	18.61	19.4	17.7	24.96	29.16	18.27	32.41	5.31	2.01	1.0	0.0
Merged-chr12-98271219-4	chr12	98271127	98271327	+	971.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	2592.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	15.34	14.59	22.82	10.05	15.14	14.74	9.97	12.87	19.47	16.07	31.66	13.78
Merged-chr6-98993413-3	chr6	98993322	98993522	+	971.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	34876.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	13.73	14.84	14.83	16.49	16.77	16.93	8.3	11.61	19.87	18.08	18.09	6.58
Merged-chr7-30072833-3	chr7	30072714	30072914	+	971.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252519)	promoter-TSS (NM_001252519)	9.0	NM_177889	330502.0	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	14.13	16.35	15.4	30.97	18.82	18.19	25.91	24.56	19.08	16.57	21.1	6.58
Merged-chr9-99386790-2	chr9	99386699	99386899	+	971.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008624, exon 6 of 6)	3' UTR (NM_008624, exon 6 of 6)	-28269.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	14.54	10.56	11.98	9.25	5.73	3.14	9.3	13.96	12.0	15.06	5.53	7.52
Merged-chr13-45897787-3	chr13	45897677	45897877	+	971.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	67214.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	23.02	21.63	30.8	16.49	24.55	25.4	15.61	19.96	26.16	25.11	27.13	7.52
Merged-chr5-54019701-3	chr5	54019586	54019786	+	971.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	21163.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	14.13	17.36	10.84	18.5	13.91	19.44	13.95	14.44	13.77	21.09	39.7	10.02
Merged-chr17-27857168-3	chr17	27857052	27857252	+	971.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	645.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	22.21	13.83	12.55	5.63	18.41	19.76	13.95	16.63	24.19	17.07	17.08	10.34
Merged-chr9-45238276-3	chr9	45238176	45238376	+	971.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	28431.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	27.46	35.72	19.97	1.61	17.59	59.89	24.91	12.42	34.42	50.21	25.12	11.59
Merged-chr9-106159936-3	chr9	106159822	106160022	+	971.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1784.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	26.65	19.37	16.54	10.86	18.0	37.63	6.64	12.73	26.16	38.16	27.13	15.98
Merged-chr10-79958327-3	chr10	79958232	79958432	+	971.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1820.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	15.34	15.85	13.12	14.08	21.27	11.29	10.3	13.57	13.57	17.07	9.55	12.84
Merged-chr2-157049133-3	chr2	157049023	157049223	+	971.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 3 of 14)	intron (NM_001164663, intron 3 of 14)	30142.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	17.36	19.87	8.56	16.09	17.59	26.65	7.97	14.44	18.69	18.08	24.62	7.21
Merged-chr15-95824027-1	chr15	95823927	95824127	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_155276)	TTS (NR_155276)	6045.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	14.94	4.28	14.26	8.45	10.64	12.23	4.98	12.5	12.98	13.05	14.57	6.89
Merged-chr7-88244630-1	chr7	88244530	88244730	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33455.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.44	3.52	0.0	5.23	6.14	10.03	10.96	15.08	11.6	4.52	6.03	3.76
Merged-chr15-64096236-2	chr15	64096130	64096330	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	MIR|SINE|MIR	-35782.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.29	6.29	22.82	6.84	17.59	19.44	22.59	22.26	24.0	22.59	9.04	10.96
Merged-chr5-136140170-3	chr5	136140075	136140275	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359414, exon 3 of 3)	exon (NM_001359414, exon 3 of 3)	1394.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	26.65	14.09	21.11	30.57	31.91	23.83	29.9	23.58	22.03	13.05	35.17	14.72
Merged-chr6-125350538-5	chr6	125350418	125350618	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	795.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	11.31	12.83	10.84	5.23	12.68	17.25	10.96	6.98	17.51	21.59	17.59	9.71
Merged-chr8-69808696-3	chr8	69808596	69808796	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198101)	promoter-TSS (NM_198101)	9.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	10.09	15.34	21.68	14.88	31.91	23.83	16.94	19.23	20.65	21.59	31.66	9.4
Merged-chr17-46782609-3	chr17	46782476	46782676	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	80.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	18.17	16.6	8.56	28.96	28.23	37.94	18.6	15.48	21.05	20.08	24.62	20.05
Merged-chr7-98357872-1	chr7	98357772	98357972	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3416.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	4.44	0.5	1.14	5.63	2.86	2.2	6.98	8.78	2.56	1.51	3.01	4.7
Merged-chr13-107837807-3	chr13	107837700	107837900	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	52264.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	15.75	14.59	22.25	20.91	22.91	21.01	6.64	22.23	29.5	24.1	43.21	24.75
Merged-chr1-105805807-3	chr1	105805737	105805937	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	Lx8|LINE|L1	25114.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	14.13	15.59	10.84	15.28	22.5	24.77	14.28	19.54	15.74	22.59	25.63	10.96
Merged-chr9-121846906-2	chr9	121846798	121846998	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-7437.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	10.9	14.59	14.26	16.09	20.05	11.6	13.62	13.01	3.74	6.53	7.54	6.89
Merged-chr5-5664084-1	chr5	5663984	5664184	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001103156)	TTS (NM_001103156)	148.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.81	3.02	2.28	3.22	3.68	1.88	8.3	6.62	1.57	3.01	0.5	3.76
Merged-chr4-32572324-3	chr4	32572217	32572417	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	-655.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	26.25	13.08	34.8	24.13	33.96	25.09	27.9	38.41	27.93	14.06	26.13	25.06
Merged-chr15-101327448-3	chr15	101327340	101327540	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34228.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	18.57	20.37	31.95	15.69	11.86	13.48	7.97	17.72	20.26	34.65	26.63	16.92
Merged-chr12-34041160-3	chr12	34041064	34041264	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	83493.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	15.75	11.07	29.09	25.34	37.64	12.23	59.79	42.73	19.47	25.11	26.63	14.41
Merged-chr5-35728127-3	chr5	35728033	35728233	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1143.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	17.36	10.56	36.51	20.91	25.36	35.75	32.55	52.88	30.49	26.61	38.19	28.82
Merged-chr12-78299322-3	chr12	78299261	78299461	+	970.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172952, intron 1 of 23)	MERV1_LTR|LTR|ERV1	72706.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	33.92	30.18	12.55	10.46	14.73	51.43	15.61	10.77	51.14	60.25	48.74	9.4
Merged-chr4-133674167-3	chr4	133674074	133674274	+	970.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1008.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	32.3	25.91	12.55	16.89	33.55	38.88	19.93	21.53	31.86	35.65	31.15	23.81
Merged-chr16-10945916-3	chr16	10945807	10946007	+	970.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31110.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	14.13	12.58	9.13	18.5	20.46	22.89	20.59	26.92	29.7	25.61	49.75	23.81
Merged-chr9-64736679-2	chr9	64736579	64736779	+	970.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	1077.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	18.98	12.83	10.27	13.27	26.18	16.93	11.63	17.47	20.26	13.05	17.59	13.78
Merged-chr10-50690504-3	chr10	50690416	50690616	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 14 of 41)	MTC|LTR|ERVL-MaLR	97847.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	10.5	12.83	17.68	19.31	13.5	18.5	12.62	17.02	26.95	19.08	38.69	10.34
Merged-chr8-80272088-3	chr8	80271981	80272181	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214073.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	16.15	19.12	23.39	12.87	18.41	20.7	30.23	31.43	23.21	15.06	40.2	13.16
Merged-chr8-8661999-3	chr8	8661895	8662095	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	10.09	13.58	21.11	10.46	18.82	21.64	18.6	30.39	19.47	27.11	39.19	21.93
Merged-chrX-151096486-3	chrX	151096354	151096554	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164578)	promoter-TSS (NM_001164578)	89.0	NM_001164578	69499.0	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	16.15	14.84	9.13	28.96	20.86	26.34	31.56	32.92	23.21	25.61	29.65	12.84
Merged-chr2-17946289-3	chr2	17946183	17946383	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50675.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	56.94	44.52	62.18	41.02	21.27	20.07	28.23	32.72	36.19	16.07	33.16	11.59
Merged-chr11-21333092-3	chr11	21333004	21333204	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290634, intron 4 of 9)	MIRb|SINE|MIR	11571.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	13.33	24.4	25.67	26.14	28.23	21.01	23.58	35.52	25.96	16.57	18.09	18.17
Merged-chr9-35183548-3	chr9	35183474	35183674	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177847)	TTS (NM_001177847)	-7587.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	35.13	16.1	23.96	24.53	22.91	28.85	18.27	33.73	20.85	11.05	23.62	14.41
Merged-chr5-90905073-3	chr5	90904984	90905184	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	1185.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	44.42	43.26	8.56	2.41	17.59	59.58	13.95	3.87	39.73	54.23	18.59	4.07
Merged-chr8-79168119-2	chr8	79168015	79168215	+	970.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	80468.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	26.65	5.79	23.96	30.97	20.05	7.53	14.95	46.35	7.08	7.03	18.59	5.95
Merged-chr5-72172836-3	chr5	72172728	72172928	+	970.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4639.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	21.0	19.62	22.25	16.49	18.82	27.59	12.95	25.01	22.62	32.64	17.59	9.71
Merged-chr6-29528034-6	chr6	29528070	29528270	+	970.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311083, intron 1 of 9)	intron (NM_001311083, intron 1 of 9)	-1112.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	9.69	9.81	3.42	5.63	6.14	11.6	5.65	7.57	14.95	13.05	17.08	7.52
Merged-chr16-70386370-2	chr16	70386273	70386473	+	970.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	MLTR14|LTR|ERV1	72424.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.25	3.52	4.56	17.29	11.45	3.76	9.63	10.57	24.0	23.6	20.6	16.29
Merged-chr6-128604686-3	chr6	128604572	128604772	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18262.0	NM_001159902	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	18.57	10.06	22.82	19.31	21.27	18.5	8.97	19.37	17.31	14.06	19.09	14.41
Merged-chr10-82128018-3	chr10	82127938	82128138	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163064)	promoter-TSS (NM_001163064)	25.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	10.9	14.09	17.68	16.09	16.36	19.13	16.28	29.5	25.77	18.08	47.23	19.74
Merged-chr19-56556161-3	chr19	56556047	56556247	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	7886.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	15.75	15.34	26.81	16.89	13.09	13.8	16.28	30.11	17.7	14.56	22.61	13.47
Merged-chr16-36621298-1	chr16	36621198	36621398	+	970.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	44779.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	9.29	5.53	21.68	9.65	14.32	15.05	9.97	25.96	9.05	7.03	15.58	5.64
Merged-chr9-40117045-3	chr9	40116949	40117149	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10990.0	NM_146855	258854.0	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	13.33	8.05	30.23	15.28	23.73	15.05	25.24	34.68	20.46	20.59	36.68	16.29
Merged-chrX-35888630-3	chrX	35888553	35888753	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009947)	promoter-TSS (NM_001009947)	-179.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	24.63	20.37	12.55	20.11	22.09	15.37	10.3	29.64	24.98	18.08	28.14	11.9
Merged-chr11-68973845-3	chr11	68973758	68973958	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285442)	promoter-TSS (NM_001285442)	-3.0	NM_001285443	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	16.96	12.07	6.28	10.46	9.82	16.93	11.96	6.76	24.98	22.59	19.6	14.41
Merged-chr6-122593526-3	chr6	122593426	122593626	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	8918.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	12.52	10.82	15.4	16.09	20.05	15.05	8.97	20.61	26.75	22.59	35.68	13.16
Merged-chr17-47408504-3	chr17	47408423	47408623	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6188.0	NM_001172091	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	20.59	18.86	20.54	14.88	8.59	17.87	9.63	9.31	17.7	21.09	15.58	16.92
Merged-chr12-16216440-1	chr12	16216340	16216540	+	970.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	373330.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.23	0.75	3.99	4.02	9.82	23.2	11.96	15.48	0.79	0.0	0.5	0.0
Merged-chr15-101146536-3	chr15	101146438	101146638	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18016.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	14.54	17.86	53.05	27.35	20.05	14.74	23.25	22.4	22.82	16.57	30.65	15.04
Merged-chr17-10335088-3	chr17	10334970	10335170	+	970.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10468.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	13.33	16.85	15.97	17.29	14.32	30.42	12.95	17.1	9.83	11.55	12.56	3.13
Merged-chr17-24895136-3	chr17	24895017	24895217	+	970.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023260)	promoter-TSS (NM_023260)	-3.0	NM_023260	79044.0	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	16.96	9.31	29.09	13.27	8.59	22.89	8.97	12.93	18.1	23.1	26.63	17.86
Merged-chr2-102902091-3	chr2	102901994	102902194	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	-429.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	29.88	20.88	6.28	15.28	28.64	27.28	15.94	14.55	41.89	34.14	18.09	12.53
Merged-chr19-59075701-3	chr19	59075607	59075807	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175172, exon 1 of 15)	5' UTR (NM_175172, exon 1 of 15)	362.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	16.15	21.13	21.11	10.86	15.55	13.8	26.57	16.63	17.31	22.09	22.61	12.22
Merged-chr1-136609029-3	chr1	136608933	136609133	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15868.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	18.17	18.61	17.68	10.05	23.32	16.62	18.93	24.64	22.42	32.13	35.68	13.47
Merged-chr3-53483888-3	chr3	53483774	53483974	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4919.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	8.48	10.06	13.12	12.87	12.68	14.42	12.95	13.43	18.1	18.08	23.11	10.34
Merged-chr5-120515458-3	chr5	120515341	120515541	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	4249.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	20.59	16.85	33.09	4.02	11.05	18.81	13.29	19.32	27.93	18.58	15.58	8.14
Merged-chr2-128439076-3	chr2	128438972	128439172	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9721.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	15.75	11.82	18.25	12.47	24.14	39.82	23.25	18.25	39.93	23.1	27.13	14.72
Merged-chr5-109548981-3	chr5	109548891	109549091	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10002.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	38.76	40.75	30.8	23.33	20.46	52.68	27.24	14.05	63.73	94.9	64.32	33.83
Merged-chr10-81129121-3	chr10	81129003	81129203	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7168.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	27.46	22.64	10.27	12.47	27.41	60.21	17.61	8.1	37.76	50.21	29.65	15.35
Merged-chr7-102233807-3	chr7	102233731	102233931	+	970.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10803.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	36.34	25.66	15.4	16.09	24.55	31.04	29.9	8.47	48.58	38.66	13.06	15.66
Merged-chr3-149220457-2	chr3	149220361	149220561	+	970.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54276.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	11.71	11.57	10.27	12.87	6.95	32.3	16.94	11.89	6.88	9.04	4.02	3.76
Merged-chr6-106791609-3	chr6	106791503	106791703	+	970.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	8484.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	23.02	13.58	18.25	13.27	14.73	23.83	18.6	13.65	39.34	19.58	22.61	28.82
Merged-chr9-59657305-4	chr9	59657237	59657437	+	970.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	CpG	969.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	10.09	17.1	12.55	10.46	11.05	10.98	9.63	10.85	24.98	27.11	16.58	15.04
Merged-chr13-95038405-3	chr13	95038302	95038502	+	970.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172263, intron 15 of 19)	L1MA4|LINE|L1	62058.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	14.94	15.85	27.38	30.16	36.82	10.66	28.57	35.66	33.83	33.14	25.63	15.66
Merged-chr5-113650585-3	chr5	113650488	113650688	+	970.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-198.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	17.77	16.85	15.97	18.1	33.14	25.09	29.9	36.73	24.0	26.61	13.57	12.84
Merged-chr7-83654043-3	chr7	83653876	83654076	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	1519.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	8.88	9.31	12.55	13.27	14.32	22.26	15.28	7.82	18.69	12.55	17.08	10.34
Merged-chr19-55586217-3	chr19	55586126	55586326	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	Tigger19a|DNA|TcMar-Tigger	115978.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	17.77	17.1	25.67	19.31	20.46	20.38	27.9	26.8	20.06	16.57	25.12	12.22
Merged-chr17-17889879-3	chr17	17889775	17889975	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2051.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	21.8	16.35	17.68	20.11	22.5	21.32	9.3	15.62	45.83	45.19	32.16	18.48
Merged-chr4-150789346-3	chr4	150789236	150789436	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-64460.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	4.85	9.06	20.54	18.9	13.91	24.15	19.6	17.24	24.39	35.15	28.64	13.16
Merged-chr8-83998457-3	chr8	83998353	83998553	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	781.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	16.15	21.38	15.97	15.69	18.0	26.34	7.64	20.27	28.13	29.12	32.66	16.92
Merged-chr6-47877559-3	chr6	47877489	47877689	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146175)	promoter-TSS (NM_146175)	34.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	35.13	30.94	49.63	25.74	27.41	32.61	25.91	55.26	28.52	13.56	48.74	26.31
Merged-chr2-163664117-3	chr2	163664016	163664216	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	L1MB2|LINE|L1	5658.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	12.11	14.84	15.97	14.08	28.23	27.28	19.6	24.48	26.75	15.57	30.15	16.29
Merged-chr16-32064141-3	chr16	32064058	32064258	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177326, intron 1 of 14)	LTR16E2|LTR|ERVL	15184.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	28.67	13.33	25.67	24.53	36.82	12.86	12.29	19.26	27.14	13.05	25.12	17.23
Merged-chr1-127213630-1	chr1	127213530	127213730	+	970.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	8644.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.65	3.77	5.13	2.01	4.91	4.08	1.0	3.79	16.72	9.54	17.08	5.64
Merged-chr3-152932250-3	chr3	152932153	152932353	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	49954.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	5.65	4.28	15.97	14.08	14.32	7.21	19.6	29.07	31.67	9.54	54.77	29.45
Merged-chr5-68033571-3	chr5	68033457	68033657	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	1722.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	16.15	13.33	26.24	16.09	4.5	7.21	17.61	17.44	21.44	6.03	31.15	28.82
Merged-chr7-143044696-1	chr7	143044596	143044796	+	970.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	MT2A|LTR|ERVL	-8054.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.81	4.53	3.99	0.0	12.68	21.64	9.97	10.77	1.77	6.03	3.52	5.01
Merged-chr1-34460288-3	chr1	34460212	34460412	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 1 of 14)	intron (NM_011206, intron 1 of 14)	566.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	13.73	9.81	5.7	18.5	15.14	20.38	6.98	16.46	22.23	19.08	25.63	20.05
Merged-chr10-34207806-3	chr10	34207700	34207900	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-249.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	14.94	12.07	9.13	5.23	17.59	27.28	10.3	3.62	24.39	22.59	20.6	5.01
Merged-chr11-70812583-3	chr11	70812538	70812738	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-77.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.86	10.56	9.7	7.24	19.64	19.13	6.64	10.68	16.13	21.59	11.05	17.23
Merged-chr9-56272468-3	chr9	56272368	56272568	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-111398.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	20.19	17.86	26.24	13.67	22.5	34.81	16.28	18.36	34.81	34.14	16.58	11.28
Merged-chr5-103376574-3	chr5	103376472	103376672	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29974.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	12.11	5.53	37.08	31.37	14.32	21.01	12.29	15.79	23.01	8.03	22.61	14.41
Merged-chr3-158061726-2	chr3	158061645	158061845	+	970.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25063.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	6.46	6.79	12.55	4.83	16.36	15.37	10.63	17.75	24.59	17.07	29.14	12.53
Merged-chr17-29371189-3	chr17	29371091	29371291	+	970.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10277.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	10.5	12.58	4.56	18.1	13.5	13.8	5.31	12.42	19.67	19.08	10.55	5.95
Merged-chr9-114639525-3	chr9	114639443	114639643	+	970.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	657.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	25.84	17.86	7.99	20.11	13.91	22.89	7.64	13.15	33.24	17.57	25.12	27.25
Merged-chr4-130807029-3	chr4	130806918	130807118	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	14481.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	12.11	19.62	14.83	12.87	32.32	22.58	23.25	37.35	26.95	19.08	30.15	20.36
Merged-chr11-22656803-3	chr11	22656706	22656906	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144523.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	15.75	12.58	22.82	11.66	15.55	23.2	5.31	13.07	20.46	22.09	21.61	15.04
Merged-chr9-27109680-3	chr9	27109567	27109767	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023277, intron 1 of 8)	intron (NM_023277, intron 1 of 8)	45754.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	26.65	15.34	35.94	22.52	22.91	21.32	20.26	34.74	36.98	16.07	33.16	20.36
Merged-chr9-113931679-3	chr9	113931581	113931781	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001083319, exon 2 of 17)	exon (NM_001083319, exon 2 of 17)	747.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	9.29	8.8	12.55	9.25	12.27	17.25	15.28	16.99	16.72	15.06	15.07	13.47
Merged-chr19-34841892-3	chr19	34841803	34842003	+	970.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114339, intron 1 of 6)	ID_B1|SINE|B4	-21130.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	22.21	22.64	29.09	32.18	17.18	19.76	24.25	31.04	16.13	9.54	24.12	15.35
Merged-chr13-40939238-3	chr13	40939126	40939326	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	21592.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	17.36	7.55	22.82	24.94	28.23	31.98	39.2	40.51	35.4	18.58	35.68	10.65
Merged-chr12-102877707-3	chr12	102877603	102877803	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172806, intron 1 of 11)	CpG	703.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	10.9	14.34	9.13	20.51	9.41	8.47	15.94	17.33	17.11	16.07	21.61	9.71
Merged-chr3-115695294-3	chr3	115695202	115695402	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19753.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	20.59	10.82	4.56	11.66	31.91	42.96	35.54	27.34	33.44	47.2	43.21	29.45
Merged-chr11-87471626-3	chr11	87471507	87471707	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	44016.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	24.23	32.45	34.8	33.78	10.64	35.12	38.53	16.91	17.7	19.08	15.07	7.83
Merged-chr11-21081289-3	chr11	21081200	21081400	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-10024.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	17.36	12.32	20.54	10.05	24.96	14.42	10.3	13.77	29.9	27.11	26.63	7.21
Merged-chr3-60527095-3	chr3	60527004	60527204	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	MIRc|SINE|MIR	25925.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	25.44	19.62	22.82	22.52	25.77	27.28	13.62	31.96	32.26	14.06	40.2	35.71
Merged-chr2-32606995-3	chr2	32606913	32607113	+	970.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	28.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	39.57	30.69	14.26	27.35	33.14	48.6	19.6	25.15	51.14	45.19	67.84	35.71
Merged-chr14-33398267-3	chr14	33398183	33398383	+	970.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12741.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	17.36	21.13	27.38	21.72	20.05	27.59	31.89	31.68	37.96	19.58	52.76	17.86
Merged-chr6-91703483-3	chr6	91703377	91703577	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	MIRb|SINE|MIR	19410.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	14.54	35.47	39.36	12.47	18.41	45.47	23.25	24.34	55.27	34.14	36.68	19.11
Merged-chr1-182282302-3	chr1	182282203	182282403	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	-108.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	29.07	26.91	17.68	19.31	33.96	39.2	31.89	25.26	27.93	28.12	16.58	24.43
Merged-chr4-138345109-2	chr4	138345018	138345218	+	970.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028176, intron 2 of 3)	intron (NM_028176, intron 2 of 3)	-18822.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	6.86	4.02	0.0	3.22	21.27	37.0	19.93	20.44	10.82	14.06	19.09	20.36
Merged-chr13-64048701-2	chr13	64048606	64048806	+	970.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40495.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	1.62	3.52	1.14	3.22	23.73	13.48	17.61	23.61	14.16	8.03	15.07	13.78
Merged-chr5-22856637-2	chr5	22856526	22856726	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-109742.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	10.09	11.32	26.24	5.63	0.41	0.0	0.0	0.34	20.65	27.62	29.65	18.48
Merged-chr6-29781963-3	chr6	29781867	29782067	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	13524.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	21.8	27.42	23.96	23.33	10.64	20.07	12.62	20.66	25.37	21.09	12.06	15.66
Merged-chr6-7800259-2	chr6	7800164	7800364	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-44960.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	16.96	17.36	25.67	27.75	15.96	5.33	9.63	16.23	5.9	5.52	8.04	10.34
Merged-chr2-124671679-3	chr2	124671598	124671798	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	18117.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	17.36	8.05	22.82	22.52	22.5	17.87	24.91	25.29	14.95	22.59	37.69	13.16
Merged-chr6-34944660-3	chr6	34944552	34944752	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001025573)	TTS (NM_001025573)	23704.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	27.05	19.12	15.4	12.87	16.77	37.94	18.93	25.74	37.96	36.65	33.67	30.07
Merged-chr2-3760435-3	chr2	3760315	3760515	+	970.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	46957.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	29.48	25.4	38.22	32.58	45.41	23.52	21.26	47.36	23.41	13.05	24.12	23.49
Merged-chr11-59201778-3	chr11	59201668	59201868	+	970.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126101)	promoter-TSS (NR_126101)	663.0	NR_037964	72203.0	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	29.48	28.93	35.94	36.2	38.86	53.31	23.58	34.07	18.69	12.55	18.09	10.65
Merged-chr5-138187412-3	chr5	138187303	138187503	+	970.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178612)	promoter-TSS (NM_178612)	48.0	NM_001356602	21343.0	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	13.73	26.91	15.97	10.86	14.32	27.59	13.29	12.2	21.83	27.11	20.1	12.22
Merged-chr2-156719111-3	chr2	156719049	156719249	+	970.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040505, intron 1 of 3)	MTB_Mm|LTR|ERVL-MaLR	1760.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	27.46	18.86	33.09	21.72	20.86	20.7	13.62	10.29	24.59	17.57	10.55	10.34
Merged-chr7-49158672-3	chr7	49158567	49158767	+	970.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	MER112|DNA|hAT-Charlie	3491.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	8.88	11.07	18.83	24.53	27.41	37.94	21.59	39.76	36.58	46.19	50.25	27.25
Merged-chr7-4071276-3	chr7	4071202	4071402	+	970.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8098.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	29.88	18.61	12.55	18.9	25.36	15.68	17.27	28.26	28.32	16.07	23.62	15.66
Merged-chr13-51136589-3	chr13	51136497	51136697	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	2279.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	14.13	10.82	23.39	25.74	19.64	12.86	7.31	31.18	17.7	19.08	23.11	10.96
Merged-chr17-74668113-3	chr17	74667984	74668184	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 62 of 72)	intron (NM_007566, intron 62 of 72)	-49666.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.46	20.88	33.66	30.16	30.27	22.26	8.3	22.6	34.62	21.59	37.18	16.6
Merged-chr15-95849971-3	chr15	95849885	95850085	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-19913.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	30.28	24.65	28.52	12.87	26.18	29.79	24.58	25.88	26.95	25.11	29.14	21.93
Merged-chr12-112588697-3	chr12	112588627	112588827	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198411)	promoter-TSS (NM_198411)	-57.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	36.75	41.5	11.41	20.51	37.23	47.66	28.23	25.4	37.37	43.18	30.65	19.11
Merged-chr9-118811108-3	chr9	118810964	118811164	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	99372.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	11.71	12.58	10.27	16.89	11.86	12.86	17.94	17.69	6.49	3.51	17.08	10.65
Merged-chr11-59506417-4	chr11	59506354	59506554	+	970.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_135273, exon 1 of 4)	non-coding (NR_135273, exon 1 of 4)	186.0	NM_001291014	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	11.71	16.85	11.41	6.03	10.64	13.48	18.6	9.59	15.93	25.61	18.59	10.96
Merged-chr3-40744404-2	chr3	40744327	40744527	+	970.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	14.13	5.03	6.85	7.24	13.09	4.39	16.94	13.82	6.49	3.51	22.11	11.9
Merged-chr3-98083143-2	chr3	98083027	98083227	+	970.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 5 of 33)	RSINE1|SINE|B4	69589.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.65	6.29	13.69	4.83	11.05	21.32	8.3	19.96	19.67	22.59	22.11	13.16
Merged-chr6-93127075-1	chr6	93126975	93127175	+	970.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.4	2.01	5.7	2.41	10.64	4.39	9.3	11.05	3.74	4.52	0.5	0.31
Merged-chr8-105291112-3	chr8	105291006	105291206	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357379, intron 8 of 12)	intron (NM_001357379, intron 8 of 12)	-1578.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	25.44	12.32	8.56	20.51	30.27	25.09	4.65	16.63	25.37	26.61	24.62	13.78
Merged-chr7-79924741-3	chr7	79924655	79924855	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027420)	TTS (NM_027420)	-4115.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	29.88	26.41	29.09	37.81	18.0	25.09	10.3	18.36	33.24	16.57	30.65	15.35
Merged-chr5-77468639-3	chr5	77468557	77468757	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131050, exon 2 of 2)	non-coding (NR_131050, exon 2 of 2)	3169.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	13.73	18.11	15.4	10.86	31.91	24.77	15.94	32.8	21.05	36.65	26.13	18.17
Merged-chr6-49107321-3	chr6	49107213	49107413	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023670, intron 8 of 14)	intron (NM_023670, intron 8 of 14)	33518.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	20.19	21.63	18.83	20.51	18.82	26.03	17.61	20.13	19.28	9.04	25.63	12.84
Merged-chr17-77969375-3	chr17	77969273	77969473	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-230875.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.65	13.58	5.7	16.89	10.23	21.01	13.95	16.04	14.95	22.59	21.61	8.46
Merged-chr4-149303416-3	chr4	149303314	149303514	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4284.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	25.04	12.58	27.95	23.33	12.27	11.29	10.96	18.59	17.9	24.1	16.08	10.96
Merged-chr4-41628287-3	chr4	41628156	41628356	+	970.3253779999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175138, intron 13 of 19)	(CA)n|Simple_repeat|Simple_repeat	12046.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	11.71	9.81	13.12	11.26	26.59	9.41	17.27	16.04	13.77	18.58	15.58	6.58
Merged-chr3-60615485-5	chr3	60615368	60615568	+	970.323792	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 5 of 7)	intron (NM_001253711, intron 5 of 7)	114289.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	9.29	10.56	0.57	10.05	9.0	14.74	12.62	5.05	19.47	14.56	11.05	7.21
Merged-chr12-80324833-3	chr12	80324763	80324963	+	970.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-64482.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	18.17	10.82	30.23	14.88	11.86	17.87	26.57	28.37	15.54	13.05	10.05	15.35
Merged-chr10-95418011-3	chr10	95417907	95418107	+	970.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045339, intron 1 of 4)	intron (NR_045339, intron 1 of 4)	632.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	17.36	21.63	10.27	18.1	13.91	26.03	9.97	17.61	23.6	20.08	31.66	12.22
Merged-chr6-124874507-3	chr6	124874389	124874589	+	970.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013488, intron 3 of 9)	MTE2b|LTR|ERVL-MaLR	-10506.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	27.46	12.58	16.54	26.55	15.14	19.76	12.62	19.54	16.33	18.08	16.08	7.83
Merged-chr19-42110732-2	chr19	42110626	42110826	+	970.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145501, intron 4 of 8)	L1MC4|LINE|L1	18267.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	18.57	21.38	15.4	15.69	17.59	24.77	9.63	13.74	7.08	8.54	5.53	9.4
Merged-chr19-41371484-2	chr19	41371382	41371582	+	970.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	L1MA9|LINE|L1	13588.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.85	3.27	9.13	4.83	19.64	9.72	15.28	14.52	29.31	22.59	32.66	17.23
Merged-chr19-53424838-3	chr19	53424724	53424924	+	970.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34190.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	43.61	17.36	34.8	46.25	36.0	28.85	48.83	54.14	22.62	10.04	23.11	16.92
Merged-chr1-172521058-3	chr1	172520971	172521171	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-59.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	22.21	17.61	13.12	16.89	12.68	24.46	3.65	11.58	30.49	35.15	28.14	23.18
Merged-chr9-89259125-3	chr9	89259019	89259219	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	47735.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	18.57	12.32	31.95	25.74	36.82	24.77	29.23	42.62	12.98	10.54	30.65	16.6
Merged-chr5-21567369-3	chr5	21567272	21567472	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	23845.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	12.52	14.84	13.69	30.16	21.68	14.74	23.58	37.21	19.67	18.08	41.2	19.11
Merged-chr12-8638887-3	chr12	8638776	8638976	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35258.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	18.98	15.34	4.56	15.69	14.32	27.28	11.96	8.97	23.21	19.08	22.61	15.35
Merged-chr11-98149731-3	chr11	98149603	98149803	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-87.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	30.28	29.93	10.84	32.58	25.77	37.32	22.26	23.64	41.11	49.21	46.23	39.16
Merged-chr7-28693647-3	chr7	28693553	28693753	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207238, intron 2 of 5)	intron (NM_207238, intron 2 of 5)	509.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	14.94	13.33	21.11	10.86	17.59	18.81	14.62	16.04	14.16	24.1	9.55	7.21
Merged-chr3-81057919-3	chr3	81057814	81058014	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	MT2A|LTR|ERVL	21498.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	26.25	14.59	30.8	16.09	27.82	27.91	15.61	25.51	46.62	30.63	33.16	10.96
Merged-chr13-42077196-3	chr13	42077091	42077291	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	25170.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	20.59	24.9	36.51	25.74	11.86	21.95	10.63	13.82	46.62	11.55	33.67	26.31
Merged-chr5-118408197-3	chr5	118408091	118408291	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-152528.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	18.57	23.64	23.96	7.24	31.09	85.29	31.56	31.15	37.96	26.61	33.16	22.56
Merged-chr1-66279371-1	chr1	66279271	66279471	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039934, intron 3 of 14)	intron (NM_001039934, intron 3 of 14)	-42353.0	NM_001310634	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	20.19	21.13	12.55	26.14	0.82	1.88	0.0	0.11	1.18	0.0	0.0	0.0
Merged-chr14-70022410-3	chr14	70022316	70022516	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55029.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	11.71	14.84	18.83	12.07	28.23	35.43	36.54	32.41	35.21	27.62	34.67	26.31
Merged-chr15-51692918-1	chr15	51692818	51693018	+	970.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172543.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	1.62	1.01	2.28	3.22	22.5	11.92	27.9	26.38	5.9	9.04	13.57	22.56
Merged-chr3-142478564-2	chr3	142478451	142478651	+	970.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18383.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	2.83	10.06	7.99	4.83	13.91	24.77	8.3	10.88	18.49	8.03	21.1	11.59
Merged-chr12-52424807-3	chr12	52424691	52424891	+	970.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55818.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	31.5	17.1	38.79	31.37	29.46	11.6	12.62	38.72	18.29	13.56	17.08	11.28
Merged-chr7-127206825-3	chr7	127206709	127206909	+	970.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1659.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	16.96	10.82	17.11	10.86	20.46	16.93	13.62	16.46	13.18	32.64	33.67	12.22
Merged-chr13-52585191-3	chr13	52585069	52585269	+	970.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	LTR65|LTR|ERV1	1732.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	9.69	12.32	10.27	13.27	18.82	16.62	12.29	13.6	16.92	14.56	22.11	7.83
Merged-chr14-100224389-3	chr14	100224284	100224484	+	970.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74588.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	14.13	21.38	7.42	13.67	15.96	33.55	14.95	33.06	18.69	24.1	22.11	9.08
Merged-chr15-6242307-3	chr15	6242189	6242389	+	970.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57500.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	18.57	6.79	9.7	13.27	16.77	10.66	17.61	16.32	14.55	18.58	17.59	13.16
Merged-chr2-11542831-3	chr2	11542735	11542935	+	970.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	B3A|SINE|B2	11094.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	13.33	15.09	4.56	17.29	14.32	18.81	6.64	20.5	16.52	26.11	21.1	12.53
Merged-chr5-124022531-3	chr5	124022446	124022646	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9714.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	18.57	19.12	22.82	12.87	14.32	10.66	13.62	13.85	20.46	14.56	25.63	8.77
Merged-chr7-27979294-3	chr7	27979125	27979325	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081021)	promoter-TSS (NM_001081021)	-68.0	NM_001081021	338354.0	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	8.08	12.58	13.12	12.87	11.45	10.03	9.97	8.94	15.34	12.05	9.04	7.52
Merged-chr19-6871820-3	chr19	6871702	6871902	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13591.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	16.15	30.69	10.27	12.07	13.5	29.79	8.64	10.15	22.82	29.62	16.58	10.34
Merged-chr11-54140201-3	chr11	54140117	54140317	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	39293.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	12.92	24.15	10.84	26.14	34.77	12.23	42.52	17.07	16.72	30.63	21.61	31.01
Merged-chr4-8822713-2	chr4	8822601	8822801	+	970.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	71377.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.67	3.02	5.7	21.72	10.64	15.05	16.28	28.04	12.98	17.57	17.59	13.47
Merged-chr12-111694496-2	chr12	111694391	111694591	+	970.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16386.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	10.23	11.92	12.62	9.25	7.67	14.06	16.58	14.72
Merged-chr4-88390167-3	chr4	88390062	88390262	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48764.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	8.48	11.07	9.13	12.07	19.64	29.48	19.27	16.12	28.13	20.08	23.62	14.1
Merged-chr13-24614585-3	chr13	24614511	24614711	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	5.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	11.31	9.56	10.27	20.11	12.27	24.15	11.63	20.38	14.95	17.07	22.61	13.78
Merged-chr13-102700344-3	chr13	102700248	102700448	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	6790.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	17.77	14.84	22.25	16.09	13.09	18.19	14.28	14.78	12.98	16.57	20.1	13.16
Merged-chr14-27562818-3	chr14	27562714	27562914	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-54354.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	12.92	15.34	17.11	24.53	37.64	33.87	48.5	25.6	35.8	47.7	60.3	30.7
Merged-chr17-34239919-3	chr17	34239810	34240010	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	1005.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	12.52	17.61	33.09	15.28	11.05	20.38	14.28	13.01	55.86	26.11	48.24	26.31
Merged-chr2-6335568-3	chr2	6335473	6335673	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12816.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	21.4	20.37	21.68	23.73	18.82	9.72	12.62	33.95	22.03	14.56	23.62	12.22
Merged-chr2-128359224-3	chr2	128359115	128359315	+	970.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	ORR1D2|LTR|ERVL-MaLR	70136.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	18.98	17.36	14.26	14.48	18.82	40.45	19.93	9.81	36.78	33.64	33.16	10.65
Merged-chr13-37894398-1	chr13	37894298	37894498	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	5527.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.85	3.27	7.99	5.23	14.32	2.82	3.32	9.79	2.75	7.03	3.01	6.58
Merged-chr19-47003903-1	chr19	47003803	47004003	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	Lx8b|LINE|L1	-10795.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	9.69	6.54	6.85	6.84	3.27	10.98	6.31	10.65	5.31	15.06	9.55	4.07
Merged-chr13-52603462-3	chr13	52603370	52603570	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6588.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	17.36	6.54	22.25	8.04	18.41	25.4	17.61	21.25	19.28	18.58	18.09	10.34
Merged-chr8-108820741-1	chr8	108820641	108820841	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	106097.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	8.88	5.53	13.69	9.65	11.45	16.93	5.65	11.47	7.08	6.03	13.57	0.63
Merged-chr19-41445849-3	chr19	41445745	41445945	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60775.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	23.82	13.58	27.38	21.32	21.68	32.3	12.62	19.88	23.01	23.6	31.15	10.34
Merged-chr4-59362805-3	chr4	59362684	59362884	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75849.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	15.34	16.35	14.83	14.08	17.18	15.37	8.3	17.52	30.88	28.12	43.72	27.25
Merged-chr14-33337360-1	chr14	33337260	33337460	+	970.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	73664.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	10.5	23.64	6.28	0.0	2.45	24.77	5.65	2.83	12.59	11.55	6.03	0.63
Merged-chr18-25546106-1	chr18	25546006	25546206	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	133642.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.04	2.77	1.14	8.45	4.09	2.51	7.64	8.07	6.1	6.03	5.53	3.13
Merged-chr1-34855200-3	chr1	34855109	34855309	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	MTD-int|LTR|ERVL-MaLR	5220.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	12.52	9.06	21.11	14.88	21.27	24.46	10.96	26.72	35.4	30.63	36.18	34.77
Merged-chr4-34958534-3	chr4	34958443	34958643	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-47062.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	21.4	15.09	21.68	14.48	15.14	20.38	8.3	27.95	21.24	18.58	27.64	16.29
Merged-chr17-50522651-2	chr17	50522559	50522759	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	13112.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	14.13	9.81	20.54	15.69	20.46	31.98	16.94	22.6	1.18	2.51	1.0	0.63
Merged-chr11-102578882-3	chr11	102578792	102578992	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040286, exon 2 of 3)	non-coding (NR_040286, exon 2 of 3)	227.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	29.48	30.18	38.22	15.69	40.5	26.65	13.29	18.48	36.19	34.65	18.59	15.66
Merged-chr14-57407702-5	chr14	57407624	57407824	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9241.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	21.8	14.59	17.68	13.27	19.23	21.64	18.27	21.45	19.87	26.11	15.58	7.83
Merged-chr16-95704706-3	chr16	95704603	95704803	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	2296.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.08	12.07	9.7	12.47	14.32	11.29	8.64	9.11	8.65	28.62	14.57	6.58
Merged-chr1-77896436-1	chr1	77896336	77896536	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	300700.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	1.62	0.5	3.99	3.22	2.45	3.45	4.32	9.25	3.54	4.52	7.03	3.76
Merged-chr5-64360771-3	chr5	64360665	64360865	+	969.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107177.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	21.4	11.82	13.69	16.89	21.68	50.8	24.58	21.5	19.87	33.14	23.11	15.04
Merged-chr9-32540866-3	chr9	32540747	32540947	+	969.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	CpG	605.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	18.17	14.59	13.69	16.09	11.86	16.93	17.27	11.16	12.0	19.58	17.08	15.98
Merged-chr14-55794053-3	chr14	55793949	55794149	+	969.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5192.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	35.53	29.68	15.4	20.91	20.05	21.32	15.61	16.32	32.45	35.65	27.64	24.12
Merged-chr15-58829076-3	chr15	58828966	58829166	+	969.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5639.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	17.36	21.88	16.54	18.9	24.55	45.47	15.28	31.23	33.04	36.65	42.71	10.96
Merged-chr4-123564674-3	chr4	123564577	123564777	+	969.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51743.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	24.63	8.8	22.82	11.66	21.27	21.32	16.94	17.22	28.52	21.59	34.17	14.41
Merged-chr7-127776571-3	chr7	127776483	127776683	+	969.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-806.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	15.34	9.81	22.25	9.25	15.14	24.46	13.62	17.07	31.47	22.59	28.14	16.29
Merged-chr1-194989193-3	chr1	194989097	194989297	+	969.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12238.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	17.36	10.82	16.54	18.5	28.64	17.56	34.55	48.14	16.13	18.58	34.17	22.24
Merged-chr19-23151749-3	chr19	23151661	23151861	+	969.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2330.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	24.23	16.35	13.12	28.56	40.5	33.55	18.93	34.74	32.06	43.68	52.26	20.99
Merged-chr14-121906596-3	chr14	121906485	121906685	+	969.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 2 of 8)	intron (NM_026861, intron 2 of 8)	9189.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	10.5	15.59	27.95	49.47	39.68	31.67	43.85	56.66	21.44	19.58	39.19	19.74
Merged-chr3-40745968-2	chr3	40745878	40746078	+	969.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	365.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	11.71	12.58	14.26	12.47	13.5	10.03	14.28	20.75	16.72	21.09	17.59	17.54
Merged-chr10-128781216-3	chr10	128781130	128781330	+	969.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9680.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	29.07	9.81	20.54	24.94	28.23	26.97	35.21	38.8	31.47	35.65	60.3	37.91
Merged-chr10-121599509-1	chr10	121599409	121599609	+	969.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-12715.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	0.5	0.0	0.0	1.23	0.0	0.33	0.34	12.98	16.07	18.09	15.98
Merged-chr4-155892225-3	chr4	155892131	155892331	+	969.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	356.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	30.28	20.63	15.4	22.52	30.68	29.48	18.93	22.51	48.58	35.15	53.77	15.04
Merged-chr1-165741837-3	chr1	165741730	165741930	+	969.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21928.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	18.17	11.82	14.83	14.48	8.18	31.67	21.92	10.46	24.39	17.07	20.6	18.17
Merged-chr11-78178641-3	chr11	78178609	78178809	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	51.0	NM_026708	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	14.54	15.85	13.12	15.69	8.59	15.99	7.97	14.33	17.51	14.06	17.08	11.9
Merged-chr12-100439457-3	chr12	100439358	100439558	+	969.7777710000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	ORR1E|LTR|ERVL-MaLR	81364.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.65	7.29	4.56	18.1	14.32	12.23	8.64	15.81	11.8	4.02	8.54	7.83
Merged-chr12-112517142-3	chr12	112517048	112517248	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-5988.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	20.59	14.59	10.84	14.88	35.18	41.39	29.23	36.22	37.96	30.13	26.63	21.3
Merged-chr9-57525805-3	chr9	57525709	57525909	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	4577.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	16.15	5.79	8.56	13.27	23.73	23.2	11.96	22.07	19.47	11.05	23.11	14.1
Merged-chr17-37083556-3	chr17	37083434	37083634	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2702.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	29.07	26.41	35.37	17.29	7.77	21.95	17.27	21.39	33.44	18.08	34.67	15.98
Merged-chr12-35038795-3	chr12	35038692	35038892	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8397.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	31.09	20.88	26.24	34.99	33.96	17.87	17.94	34.71	13.96	15.57	18.59	11.9
Merged-chr10-99247329-3	chr10	99247238	99247438	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-15893.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	17.77	16.6	22.82	12.07	14.73	39.2	8.97	20.13	30.68	26.61	25.63	24.43
Merged-chr6-92101189-3	chr6	92101095	92101295	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8762.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	31.09	29.93	40.5	13.67	49.91	52.99	44.18	37.93	53.3	65.27	55.27	44.8
Merged-chr13-5911643-3	chr13	5911556	5911756	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	50167.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	24.23	19.87	31.38	21.32	18.82	16.31	10.96	8.41	35.4	21.59	24.62	10.65
Merged-chr14-62892708-3	chr14	62892612	62892812	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27170.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	18.98	15.34	39.36	18.9	15.55	9.09	12.62	18.59	35.01	17.07	33.67	21.3
Merged-chr19-17125580-3	chr19	17125498	17125698	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181348, exon 9 of 20)	exon (NM_181348, exon 9 of 20)	169480.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	16.96	15.09	21.11	32.58	32.73	15.68	12.62	31.54	15.14	21.59	16.08	17.54
Merged-chr13-30698091-3	chr13	30697996	30698196	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	38037.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	24.63	12.58	24.53	39.01	38.46	24.77	12.29	20.41	26.95	11.05	27.64	11.9
Merged-chr18-36471080-3	chr18	36470941	36471141	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16546.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	15.34	20.37	9.13	12.87	9.41	14.42	11.29	14.52	25.18	21.09	21.1	18.17
Merged-chr12-25215400-3	chr12	25215277	25215477	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86203.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	22.61	17.36	14.83	10.86	4.91	15.68	17.61	13.57	26.95	20.59	24.62	14.1
Merged-chr19-44294862-3	chr19	44294752	44294952	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009128, intron 1 of 5)	intron (NM_009128, intron 1 of 5)	1176.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	27.46	17.36	14.83	11.66	21.68	35.75	16.28	17.1	21.83	20.59	16.58	8.14
Merged-chr6-71208877-3	chr6	71208791	71208991	+	969.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9012.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	15.34	17.86	11.98	5.63	17.59	17.87	6.64	12.67	16.92	8.03	17.08	6.27
Merged-chr5-117509765-3	chr5	117509665	117509865	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	95763.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	14.54	11.82	8.56	14.08	19.64	15.68	5.31	14.22	36.19	27.62	38.19	15.66
Merged-chr1-157445571-3	chr1	157445490	157445690	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12978.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	53.7	44.27	39.93	69.98	19.23	10.66	13.95	16.82	49.17	51.72	61.3	41.66
Merged-chr4-35994192-3	chr4	35994075	35994275	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-148971.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	11.31	15.85	35.94	14.48	38.05	17.25	28.57	73.26	35.6	25.61	46.23	16.92
Merged-chr18-11718362-3	chr18	11718265	11718465	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 8 of 18)	intron (NM_001081223, intron 8 of 18)	61016.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.06	11.57	17.68	13.27	10.64	23.2	21.59	25.65	16.72	24.1	29.65	23.81
Merged-chr2-75757516-3	chr2	75757432	75757632	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52869.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	12.92	14.84	31.38	29.76	16.77	34.49	42.85	30.25	52.52	44.69	70.35	31.64
Merged-chr2-60903698-3	chr2	60903586	60903786	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22248.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	21.8	14.09	17.11	8.04	26.18	31.67	35.87	31.65	42.09	50.71	65.83	38.85
Merged-chr18-34865276-3	chr18	34865247	34865447	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007913)	TTS (NM_007913)	4140.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	16.96	26.16	10.27	7.64	12.27	13.17	0.66	2.33	16.13	20.08	3.01	6.27
Merged-chr11-50285395-3	chr11	50285314	50285514	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	RLTR20B2|LTR|ERVK	6922.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	23.82	21.13	23.39	22.52	40.09	43.59	36.21	25.4	31.67	32.13	41.71	9.08
Merged-chr7-101871539-3	chr7	101871459	101871659	+	969.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008034)	promoter-TSS (NM_008034)	-771.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	13.73	9.81	17.68	18.1	21.68	8.47	15.61	21.14	24.0	26.61	16.58	16.6
Merged-chr8-111525362-3	chr8	111525280	111525480	+	969.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-3273.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	24.63	20.12	27.95	14.08	12.27	11.92	9.3	12.17	17.31	19.58	33.67	16.92
Merged-chr7-79920647-3	chr7	79920548	79920748	+	969.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	-8.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	15.34	13.08	24.53	15.69	16.77	20.7	12.95	16.12	22.03	22.09	22.61	9.08
Merged-chr17-17600189-3	chr17	17600091	17600291	+	969.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	24298.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	14.54	12.32	23.96	10.05	17.18	21.32	10.3	23.24	28.91	12.05	26.13	13.16
Merged-chr19-6459688-3	chr19	6459589	6459789	+	969.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	40951.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	13.33	9.81	20.54	20.91	31.09	22.58	11.63	17.52	23.01	25.11	33.16	20.05
Merged-chr9-44514293-3	chr9	44514191	44514391	+	969.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	12130.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	30.69	27.42	17.68	20.51	35.18	42.96	15.28	15.73	25.37	29.62	15.07	19.74
Merged-chr1-181232472-3	chr1	181232360	181232560	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20482.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	17.36	18.86	13.69	21.32	22.5	21.32	24.91	27.53	21.44	37.66	24.12	14.72
Merged-chrX-74425393-3	chrX	74425280	74425480	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161421, intron 1 of 10)	intron (NM_001161421, intron 1 of 10)	768.0	NM_001136067	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	18.57	16.35	20.54	15.69	28.64	25.71	21.26	21.45	22.82	35.65	28.14	24.12
Merged-chrX-99464220-3	chrX	99464116	99464316	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6519.0	NM_001083110	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	20.19	19.87	12.55	17.29	13.91	13.8	13.62	20.94	27.34	13.05	35.68	7.21
Merged-chr19-4164694-3	chr19	4164587	4164787	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134148, exon 10 of 10)	3' UTR (NM_134148, exon 10 of 10)	-1304.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	6.46	9.56	14.83	20.91	16.36	14.11	12.29	18.14	17.31	18.58	20.1	14.72
Merged-chr10-17724207-3	chr10	17724058	17724258	+	969.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010828, exon 2 of 2)	exon (NM_010828, exon 2 of 2)	930.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	47.24	55.08	15.97	23.73	26.59	49.23	24.25	19.63	44.25	51.21	33.16	11.28
Merged-chr7-101028722-3	chr7	101028636	101028836	+	969.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16683.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	15.34	16.35	20.54	6.44	9.82	10.98	10.3	15.03	16.13	11.05	15.58	10.96
Merged-chr2-181275494-2	chr2	181275377	181275577	+	969.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	12489.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	8.88	2.52	0.0	1.61	8.59	10.35	12.29	14.05	19.87	7.03	28.64	13.47
Merged-chr4-13127258-2	chr4	13127154	13127354	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	220417.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	12.52	14.84	19.4	22.12	33.55	31.98	20.59	48.39	5.11	9.04	8.54	3.45
Merged-chr8-56285074-3	chr8	56284962	56285162	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-9490.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	19.79	9.31	22.25	19.31	34.77	27.59	48.5	75.34	23.21	39.16	36.68	26.31
Merged-chr12-85288607-3	chr12	85288524	85288724	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	33.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	31.5	31.19	23.96	35.39	54.82	36.37	10.3	26.94	54.09	61.26	34.67	12.53
Merged-chr13-109441644-3	chr13	109441542	109441742	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116898.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	21.8	11.07	21.68	33.78	33.55	16.31	30.89	55.29	14.36	14.06	22.11	13.16
Merged-chr14-54222501-1	chr14	54222401	54222601	+	969.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31428.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.0	0.75	3.42	0.0	0.82	1.88	1.66	0.62	19.67	19.08	12.06	5.33
Merged-chr1-174042691-3	chr1	174042589	174042789	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	756.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	14.94	13.08	15.97	9.65	21.68	31.36	15.28	13.04	25.18	20.59	50.25	18.17
Merged-chr6-118179759-3	chr6	118179673	118179873	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080780, intron 4 of 18)	intron (NM_001080780, intron 4 of 18)	17971.0	NM_009050	19713.0	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	23.02	21.38	20.54	34.99	20.05	26.97	20.26	29.16	20.65	13.05	21.61	19.11
Merged-chr19-4061283-3	chr19	4061187	4061387	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1840.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	22.21	17.36	17.11	16.89	14.32	24.77	17.94	15.34	23.21	24.6	32.16	7.83
Merged-chr1-59317607-3	chr1	59317510	59317710	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	60704.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	25.04	23.14	18.25	6.84	11.05	20.07	4.65	3.06	28.32	13.56	21.1	3.45
Merged-chr9-7556475-3	chr9	7556365	7556565	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1964.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	15.34	8.3	22.82	25.74	35.59	19.76	35.54	36.45	37.76	20.59	39.19	17.54
Merged-chr3-31417142-3	chr3	31417029	31417229	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106810.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	20.59	5.79	23.39	12.07	56.46	25.4	60.46	66.03	26.75	22.59	39.19	18.17
Merged-chr10-68275551-3	chr10	68275453	68275653	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3173.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	29.48	33.45	10.27	20.11	24.96	76.83	12.62	13.74	56.65	82.85	40.2	21.62
Merged-chr2-167060509-3	chr2	167060412	167060612	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2422.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	31.5	26.91	37.65	14.08	27.82	28.85	14.95	27.56	37.96	37.16	26.13	33.52
Merged-chr5-97062297-2	chr5	97062197	97062397	+	969.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49299.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	2.42	2.77	2.85	2.01	23.32	15.37	13.95	22.07	32.06	14.56	43.72	13.16
Merged-chr9-3000084-3	chr9	2999975	3000175	+	969.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	38668.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	36.75	23.64	13.12	23.73	26.59	22.58	29.9	106.65	42.48	46.7	25.12	39.78
Merged-chr6-54143539-3	chr6	54143437	54143637	+	969.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	103605.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	11.31	17.86	31.95	25.74	24.55	20.38	19.27	28.18	24.39	14.06	24.62	22.24
Merged-chr11-120800261-3	chr11	120800178	120800378	+	969.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3883.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	11.71	26.66	13.12	22.12	27.82	34.49	18.6	18.98	16.72	15.06	25.63	10.65
Merged-chr15-100304768-3	chr15	100304615	100304815	+	969.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-102.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	19.38	9.31	15.4	11.26	11.45	15.37	5.98	6.9	20.26	11.55	18.09	13.78
Merged-chr1-94582700-2	chr1	94582589	94582789	+	969.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214753.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	3.23	4.53	7.99	3.22	16.77	12.54	11.63	23.8	22.82	24.6	21.61	17.86
Merged-chr17-85495546-1	chr17	85495446	85495646	+	969.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122850.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.42	0.5	2.28	1.61	17.18	10.98	15.28	23.16	5.51	0.0	6.03	2.82
Merged-chr12-24493622-3	chr12	24493520	24493720	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4961.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	6.86	16.35	7.42	19.31	26.59	15.05	12.62	16.68	15.34	14.06	18.59	18.48
Merged-chr2-50687507-3	chr2	50687425	50687625	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-222159.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	11.31	8.3	4.56	9.65	32.32	27.91	15.61	19.96	15.14	16.57	30.65	9.71
Merged-chr5-31571540-3	chr5	31571441	31571641	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102275)	promoter-TSS (NR_102275)	-144.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	19.79	20.37	42.78	20.91	24.96	27.28	12.95	25.93	20.06	12.05	25.12	24.12
Merged-chr7-126809183-3	chr7	126809066	126809266	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7719.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	29.48	18.61	38.22	13.67	21.68	29.48	12.62	27.62	21.64	12.05	33.16	15.98
Merged-chr17-31305652-3	chr17	31305548	31305748	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	9424.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	12.11	16.35	18.25	10.86	19.23	35.12	20.59	10.18	35.21	34.14	33.16	15.66
Merged-chr7-143056118-3	chr7	143056026	143056226	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-2440.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	18.17	14.84	11.41	21.72	37.64	21.64	16.61	23.64	30.29	30.63	34.17	25.69
Merged-chr14-100211291-3	chr14	100211204	100211404	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61508.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	9.69	13.33	15.97	20.11	12.68	18.81	12.62	34.18	21.05	6.03	29.65	10.02
Merged-chr10-41385658-3	chr10	41385562	41385762	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64696.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	22.21	19.62	13.69	32.18	28.23	25.4	18.6	36.7	29.11	22.59	35.17	10.65
Merged-chr15-97821537-3	chr15	97821442	97821642	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6679.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	30.28	23.64	10.84	20.91	41.32	35.12	19.27	28.46	39.73	37.16	24.62	19.74
Merged-chr2-13543805-3	chr2	13543710	13543910	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	854.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	19.38	20.12	18.83	18.5	28.23	8.47	11.96	20.13	49.57	15.06	17.08	16.92
Merged-chr15-62104790-3	chr15	62104676	62104876	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	65519.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	14.13	13.33	22.82	12.87	32.32	20.7	33.88	45.73	21.24	13.56	16.58	11.59
Merged-chr4-132270189-5	chr4	132270052	132270252	+	969.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002865)	promoter-TSS (NR_002865)	34.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	21.0	15.59	13.12	23.33	19.64	40.45	17.27	27.08	17.9	25.61	32.66	21.62
Merged-chr4-101721941-3	chr4	101721849	101722049	+	969.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 1 of 18)	L2a|LINE|L2	4542.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	22.21	8.05	18.83	22.93	41.32	17.56	42.19	47.66	41.3	27.11	56.78	33.83
Merged-chr8-70626350-3	chr8	70626255	70626455	+	969.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	5740.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	12.92	9.06	5.7	3.22	15.14	15.05	4.98	18.39	15.14	4.52	14.07	6.58
Merged-chr13-57973720-3	chr13	57973610	57973810	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	49490.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	28.27	22.64	22.82	27.35	23.32	25.09	8.97	18.5	26.16	14.06	14.57	19.11
Merged-chr18-64987044-3	chr18	64986928	64987128	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-36499.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	21.0	29.18	26.24	14.48	7.36	30.1	12.29	15.87	28.13	22.09	19.09	13.47
Merged-chr9-66908177-3	chr9	66908067	66908267	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11538.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	20.19	13.58	17.11	22.52	17.18	28.85	12.95	16.21	18.49	31.63	9.04	8.46
Merged-chr9-44513281-3	chr9	44513184	44513384	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	13137.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	27.46	26.66	19.4	14.08	30.68	52.99	20.26	21.73	44.45	53.73	46.23	18.48
Merged-chr5-24596824-4	chr5	24596747	24596947	+	969.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025891, exon 3 of 13)	exon (NM_025891, exon 3 of 13)	4733.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	6.86	6.79	8.56	14.08	8.18	8.47	5.65	1.46	9.05	6.53	8.54	6.27
Merged-chr7-126949932-3	chr7	126949820	126950020	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252567)	promoter-TSS (NM_001252567)	-338.0	NM_001361488	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	8.48	14.34	15.4	18.1	15.96	21.32	9.3	22.85	17.7	16.57	26.13	12.53
Merged-chr17-56443417-3	chr17	56443306	56443506	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	18815.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	15.34	12.58	6.28	6.84	21.68	29.79	21.26	11.58	12.19	10.04	19.6	9.4
Merged-chr16-30968624-3	chr16	30968550	30968750	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	112782.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	52.09	81.75	102.11	70.79	93.68	133.9	77.4	91.6	21.05	11.55	27.64	8.14
Merged-chr4-32359369-1	chr4	32359269	32359469	+	969.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58066.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	7.27	4.02	8.56	7.64	16.36	14.11	10.96	23.27	7.08	2.51	6.53	3.76
Merged-chr2-132607893-3	chr2	132607796	132607996	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9700.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	36.75	23.64	20.54	7.24	31.09	43.9	10.96	15.34	49.96	37.66	32.66	17.54
Merged-chr18-4921510-3	chr18	4921404	4921604	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109018.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	23.82	17.86	18.83	27.75	34.36	27.59	18.93	21.11	10.62	17.07	30.15	19.11
Merged-chr7-27577137-3	chr7	27577019	27577219	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175107, intron 8 of 9)	Lx8|LINE|L1	-14433.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	10.5	19.37	17.11	19.71	22.91	19.76	9.97	18.53	62.55	49.21	75.87	43.86
Merged-chr12-45011613-3	chr12	45011531	45011731	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62852.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.85	4.78	15.4	17.29	13.09	9.72	15.94	25.99	25.18	22.59	53.26	23.18
Merged-chrX-11437681-2	chrX	11437575	11437775	+	969.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109853.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	6.06	9.31	19.97	14.48	4.5	0.31	12.62	13.49	3.74	2.01	9.04	5.33
Merged-chr5-64269681-2	chr5	64269597	64269797	+	969.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	39340.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	1.71	0.4	28.64	15.68	29.23	49.49	20.46	11.55	35.17	19.11
Merged-chr1-165708067-3	chr1	165707952	165708152	+	969.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178593)	promoter-TSS (NM_178593)	42.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	14.94	15.34	25.1	9.25	20.46	28.54	19.6	12.7	20.46	17.07	34.17	5.95
Merged-chr8-69071233-3	chr8	69071161	69071361	+	969.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153054, intron 5 of 16)	intron (NM_153054, intron 5 of 16)	-17475.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	14.94	30.69	38.79	19.31	37.23	58.64	50.16	29.3	19.28	21.09	12.56	5.95
Merged-chr10-40301532-3	chr10	40301451	40301651	+	969.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009665, intron 1 of 7)	CpG	635.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	11.31	16.1	17.11	18.5	18.82	14.42	11.63	15.22	17.9	13.56	16.58	12.22
Merged-chr13-74463298-3	chr13	74463181	74463381	+	969.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30669.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	14.94	8.3	14.83	15.28	13.09	10.03	22.59	15.42	18.69	17.57	26.13	17.54
Merged-chr2-19666047-3	chr2	19665941	19666141	+	969.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7979.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	18.17	22.89	33.66	12.07	24.14	21.32	21.59	27.9	32.26	19.08	34.67	31.95
Merged-chr11-21220917-3	chr11	21220821	21221021	+	969.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18111.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	25.04	16.6	31.38	28.56	27.82	32.61	7.97	31.32	37.76	22.09	35.17	24.43
Merged-chr13-98255220-3	chr13	98255136	98255336	+	969.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178918, intron 6 of 12)	intron (NM_178918, intron 6 of 12)	7756.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	22.61	37.73	17.11	4.83	8.59	11.6	5.98	12.25	40.52	22.09	29.65	20.05
Merged-chr18-62059236-3	chr18	62059156	62059356	+	969.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106181.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	33.11	42.76	55.9	12.07	45.0	68.05	29.56	25.54	34.42	31.63	41.71	20.05
Merged-chr19-29468853-3	chr19	29468755	29468955	+	969.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	53132.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	21.8	14.59	23.39	4.83	30.27	47.04	19.27	15.25	42.29	37.16	26.63	10.34
Merged-chr12-25157389-3	chr12	25157303	25157503	+	969.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28229.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	50.07	31.69	33.09	33.38	50.73	33.55	24.25	21.93	30.49	26.61	30.65	10.34
Merged-chr8-79447557-3	chr8	79447444	79447644	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48076.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	23.82	17.86	21.68	36.6	24.55	11.6	32.22	43.09	19.28	12.05	29.14	18.17
Merged-chr16-91413332-3	chr16	91413227	91413427	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	7092.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	12.11	7.55	11.98	8.85	15.14	17.87	32.22	30.08	19.08	10.54	21.61	20.99
Merged-chr17-26502013-3	chr17	26501923	26502123	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6449.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	30.69	30.43	18.83	23.73	40.5	50.8	12.62	25.29	35.8	29.62	19.09	5.33
Merged-chr15-59439620-3	chr15	59439529	59439729	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	65431.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	13.73	12.32	11.41	28.56	32.32	26.65	31.89	43.09	12.78	13.56	18.59	15.66
Merged-chr16-31200056-3	chr16	31199943	31200143	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	1195.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	21.8	14.59	13.69	15.28	32.32	15.99	15.28	23.69	23.21	16.57	16.58	11.28
Merged-chr5-134520179-5	chr5	134520058	134520258	+	969.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 3 of 15)	URR1B|DNA|hAT-Charlie	32276.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	11.71	15.59	12.55	24.13	4.09	8.47	7.31	10.65	11.41	19.58	25.12	18.17
Merged-chr6-134274094-1	chr6	134273994	134274194	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-122235.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.63	3.52	4.56	4.02	9.0	13.17	8.97	9.56	0.2	0.5	0.0	0.94
Merged-chr11-96874986-1	chr11	96874886	96875086	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24593.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.4	0.0	0.0	2.41	1.64	3.76	2.99	3.73	12.98	5.02	15.07	3.76
Merged-chr19-31950995-3	chr19	31950887	31951087	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82226.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	18.98	16.1	13.69	13.67	7.36	10.35	13.95	22.74	18.49	6.53	16.58	5.95
Merged-chr1-121430697-1	chr1	121430597	121430797	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-370.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	14.54	13.33	18.83	16.09	6.55	3.14	8.3	10.15	32.26	23.6	25.63	14.72
Merged-chr7-101618528-3	chr7	101618440	101618640	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-37379.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	9.69	14.59	32.52	22.52	31.09	37.0	18.93	34.35	44.06	23.1	33.16	38.85
Merged-chr17-63826981-3	chr17	63826880	63827080	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37001.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	12.11	8.8	17.11	20.51	17.59	22.58	22.59	33.11	12.78	17.57	38.19	18.48
Merged-chr17-7399154-1	chr17	7399054	7399254	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-13849.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	1.01	0.0	0.0	0.41	1.25	3.65	0.64	26.55	39.16	19.6	12.53
Merged-chr2-165917779-1	chr2	165917679	165917879	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32941.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.44	5.53	14.83	4.42	7.36	7.84	3.32	2.38	17.7	8.54	10.05	10.65
Merged-chr8-115407732-1	chr8	115407632	115407832	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	299162.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	9.29	4.02	9.13	5.63	5.73	1.57	2.99	11.61	19.08	13.56	8.04	5.95
Merged-chr1-127135473-2	chr1	127135376	127135576	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69510.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	13.33	10.56	6.85	5.23	12.27	12.23	8.3	16.35	5.31	4.52	11.56	7.21
Merged-chr15-59643080-3	chr15	59642990	59643190	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5564.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	17.36	10.56	13.69	14.88	20.46	24.46	12.29	27.39	15.34	15.57	19.6	14.41
Merged-chr5-127608741-2	chr5	127608635	127608835	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	8657.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	4.85	5.28	9.13	6.03	12.68	11.6	14.62	12.76	14.95	9.04	13.06	12.53
Merged-chr11-106778879-1	chr11	106778779	106778979	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_148430, exon 1 of 8)	non-coding (NR_148430, exon 1 of 8)	587.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	11.71	10.31	3.42	14.88	25.77	13.8	5.65	6.9	20.06	16.07	6.03	7.83
Merged-chr13-9094822-1	chr13	9094722	9094922	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	941.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.65	10.82	13.12	5.23	8.18	14.11	13.62	14.92	23.41	17.07	18.59	16.6
Merged-chr4-136892423-1	chr4	136892323	136892523	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_007574, exon 2 of 3)	exon (NM_007574, exon 2 of 3)	491.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	7.27	9.31	11.41	4.02	12.27	8.15	7.64	3.87	11.6	13.56	18.59	5.01
Merged-chr7-127375768-1	chr7	127375668	127375868	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_175560, exon 1 of 3)	exon (NM_175560, exon 1 of 3)	282.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	12.11	18.11	7.42	8.45	10.23	3.76	6.64	3.28	7.08	11.55	7.54	2.51
Merged-chr9-24349692-3	chr9	24349589	24349789	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153451.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	8.88	8.05	38.79	37.0	25.77	10.98	17.61	43.49	20.85	20.08	26.63	20.36
Merged-chr17-35762800-3	chr17	35762716	35762916	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	12.92	12.83	10.27	12.87	29.05	40.45	22.26	25.09	65.89	52.22	69.34	50.12
Merged-chr9-96630970-3	chr9	96630821	96631021	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 1 of 23)	CpG	582.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	14.54	12.32	9.13	13.67	11.86	12.86	11.29	14.02	16.72	16.07	20.6	10.96
Merged-chr10-7260671-1	chr10	7260571	7260771	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48434.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.02	2.77	5.7	4.83	16.36	13.17	2.66	14.5	1.38	3.01	5.53	1.25
Merged-chr1-162207384-3	chr1	162207307	162207507	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-10216.0	NR_002870	474332.0	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	14.54	18.86	18.25	13.27	31.09	42.02	25.58	46.51	17.7	28.12	26.13	21.3
Merged-chr15-33265883-1	chr15	33265783	33265983	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 3 of 7)	L2c|LINE|L2	140056.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	4.85	3.52	3.99	1.61	11.45	4.08	1.66	10.09	11.21	5.02	17.08	3.76
Merged-chr19-4396554-3	chr19	4396471	4396671	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001001984, exon 1 of 21)	5' UTR (NM_001001984, exon 1 of 21)	506.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	28.27	20.37	23.96	11.26	12.68	19.13	15.61	15.53	21.24	23.1	21.61	16.6
Merged-chr12-111470601-3	chr12	111470473	111470673	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15250.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	18.98	16.85	19.4	12.47	16.36	31.04	18.27	16.29	25.96	10.54	23.11	15.35
Merged-chr10-130231632-3	chr10	130231514	130231714	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20486.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	24.23	17.86	15.97	19.31	52.37	40.14	29.56	69.03	23.6	14.56	32.66	26.0
Merged-chr3-115763440-3	chr3	115763359	115763559	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48404.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	14.54	12.83	23.96	24.13	30.68	33.87	22.26	39.84	29.5	47.2	61.81	18.8
Merged-chr3-119806308-3	chr3	119806185	119806385	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-22897.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	19.38	23.39	45.64	31.77	29.46	29.79	16.61	35.89	24.0	13.56	46.73	22.87
Merged-chr6-129559420-3	chr6	129559301	129559501	+	968.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18885.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	10.5	12.83	6.85	14.48	4.09	14.42	10.63	12.2	14.75	9.54	14.07	6.27
Merged-chr4-155162903-3	chr4	155162769	155162969	+	968.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59666.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	32.71	35.97	14.83	14.48	36.82	36.06	29.56	16.79	26.95	29.12	19.09	7.52
Merged-chr8-13504288-4	chr8	13504165	13504365	+	968.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9730.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	27.86	11.57	21.11	37.4	24.55	19.76	52.48	48.84	8.85	20.08	17.08	11.28
Merged-chr15-24990262-3	chr15	24990163	24990363	+	968.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	423501.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	9.29	12.32	29.66	50.68	29.86	30.42	37.87	73.51	42.48	10.04	46.73	24.12
Merged-chr6-116631154-3	chr6	116631056	116631256	+	968.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2157.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	16.56	13.83	17.11	14.88	17.18	18.81	5.65	18.73	15.14	17.07	17.59	11.9
Merged-chr6-87812619-3	chr6	87812517	87812717	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104478)	promoter-TSS (NR_104478)	-453.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	9.69	10.56	13.69	14.08	11.45	13.48	8.3	17.02	18.69	15.06	12.06	10.65
Merged-chr2-128373603-3	chr2	128373484	128373684	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55767.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	21.4	5.53	21.68	8.45	22.09	26.03	27.24	19.85	18.88	13.56	21.61	17.54
Merged-chr3-107142982-3	chr3	107142895	107143095	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40148.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	4.04	6.29	17.11	20.51	20.46	13.17	21.92	46.37	23.8	13.05	43.72	22.87
Merged-chr1-191599426-3	chr1	191599305	191599505	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178632, intron 7 of 19)	intron (NM_178632, intron 7 of 19)	23769.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	16.15	8.8	5.7	12.47	10.23	14.74	12.29	15.79	43.27	28.62	42.71	15.35
Merged-chr13-52589247-3	chr13	52589141	52589341	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5804.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	17.77	11.07	39.93	16.49	28.64	27.91	23.25	48.11	22.42	13.56	36.18	12.84
Merged-chr8-126688189-3	chr8	126688100	126688300	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94764.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	20.19	18.36	27.95	19.71	19.23	15.68	14.28	15.2	11.8	12.55	26.13	12.22
Merged-chr12-91589132-3	chr12	91589061	91589261	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	488.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	10.5	19.12	8.56	13.67	11.05	18.5	13.29	12.25	24.0	20.59	18.09	9.71
Merged-chr2-38484782-3	chr2	38484684	38484884	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26913.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	18.98	11.07	16.54	16.09	15.14	10.03	18.27	18.17	19.87	22.09	19.09	15.66
Merged-chr18-4315307-3	chr18	4315224	4315424	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37629.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	26.25	42.01	24.53	13.67	33.55	42.33	15.61	17.78	49.17	36.65	31.15	14.41
Merged-chr14-69141065-2	chr14	69140955	69141155	+	968.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30747.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	6.46	4.02	9.7	6.84	6.14	6.9	31.56	14.22	20.26	21.09	17.59	10.96
Merged-chr5-64391618-3	chr5	64391530	64391730	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76312.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	46.03	46.78	37.65	21.32	63.41	52.37	35.87	53.8	26.55	20.59	24.12	7.21
Merged-chr18-7626937-3	chr18	7626810	7627010	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161620)	promoter-TSS (NM_001161620)	-47.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	81.97	67.16	96.98	51.88	18.0	5.02	13.62	11.78	224.62	139.59	270.84	135.02
Merged-chr1-87620447-4	chr1	87620460	87620660	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010566, exon 1 of 27)	exon (NM_010566, exon 1 of 27)	248.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	18.98	19.37	30.8	20.11	16.77	27.59	26.57	19.57	19.08	26.61	31.66	22.24
Merged-chrX-73930794-4	chrX	73930588	73930788	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023132, intron 1 of 10)	intron (NM_023132, intron 1 of 10)	162.0	NM_023132	19703.0	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	14.94	19.12	14.83	12.87	18.41	16.62	14.62	9.56	18.49	18.08	18.59	7.21
Merged-chr9-21610065-3	chr9	21609964	21610164	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1735.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	16.96	23.14	17.11	5.63	22.5	24.15	5.31	9.36	26.55	23.1	25.12	6.89
Merged-chr2-73453897-3	chr2	73453758	73453958	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	31.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	10.5	6.29	12.55	18.5	17.59	16.62	7.97	18.59	22.82	20.59	27.13	20.05
Merged-chr5-99374660-3	chr5	99374552	99374752	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-121725.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	14.94	8.8	17.68	6.84	19.23	26.97	17.94	21.22	37.57	31.13	56.78	29.76
Merged-chr10-59236124-3	chr10	59236017	59236217	+	968.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14195.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	23.02	28.67	15.97	5.23	20.05	45.15	19.6	17.02	39.34	40.67	32.16	10.02
Merged-chr5-81019988-4	chr5	81019986	81020186	+	968.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347367)	promoter-TSS (NM_001347367)	-485.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	6.86	10.56	16.54	16.89	14.32	8.47	5.31	7.68	11.6	10.04	18.59	9.71
Merged-chr7-43614423-3	chr7	43614294	43614494	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355131, intron 3 of 3)	intron (NM_001355131, intron 3 of 3)	7225.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	16.15	11.57	29.66	23.33	22.09	19.76	42.85	37.07	26.16	24.1	19.6	19.42
Merged-chr17-5303366-4	chr17	5303293	5303493	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	115374.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	13.33	6.29	14.83	6.44	14.73	15.05	12.62	15.34	16.13	6.53	23.11	14.72
Merged-chr12-99903056-3	chr12	99902971	99903171	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18556.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	15.34	12.07	19.97	17.7	20.05	18.81	10.3	17.47	16.33	16.07	29.65	8.14
Merged-chr18-56622450-3	chr18	56622363	56622563	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34115.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	11.71	15.59	13.69	2.01	18.82	14.42	15.28	27.59	36.78	34.14	51.76	13.47
Merged-chr16-48833828-3	chr16	48833730	48833930	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8722.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	21.8	14.34	37.65	37.4	33.96	12.54	27.9	42.34	32.06	26.61	39.19	24.12
Merged-chr5-148465545-3	chr5	148465464	148465664	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65660.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	14.13	15.34	22.25	29.36	15.14	23.2	12.62	10.07	36.58	24.1	33.67	22.87
Merged-chr1-72428746-3	chr1	72428664	72428864	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001045533, exon 4 of 4)	exon (NM_001045533, exon 4 of 4)	107800.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	11.71	12.83	11.98	13.27	28.64	25.09	38.53	54.42	21.83	29.12	31.66	24.43
Merged-chr9-63803251-3	chr9	63803159	63803359	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45265.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	11.71	15.59	16.54	7.64	28.23	38.88	17.61	12.64	23.6	19.08	15.07	5.33
Merged-chr10-17989274-3	chr10	17989169	17989369	+	968.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33821.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	18.57	15.59	22.25	14.08	19.23	13.8	11.29	19.23	29.31	32.13	31.15	9.4
Merged-chr2-61812021-2	chr2	61811937	61812137	+	968.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009322, exon 6 of 6)	exon (NM_009322, exon 6 of 6)	7584.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	5.25	6.79	11.41	4.02	6.55	4.08	16.28	11.13	12.19	5.02	22.11	8.46
Merged-chr2-167691580-2	chr2	167691452	167691652	+	968.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	375.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.65	6.29	4.56	10.46	5.73	5.96	12.62	10.88	12.98	7.03	20.1	10.96
Merged-chr8-108683908-3	chr8	108683806	108684006	+	968.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30738.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	16.15	6.54	14.83	19.71	17.59	27.91	25.24	26.83	19.08	22.09	26.13	12.22
Merged-chr9-3335575-3	chr9	3335476	3335676	+	968.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	345.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	25.04	28.67	17.11	28.96	23.73	26.34	34.88	37.74	15.14	22.59	20.6	22.87
Merged-chr3-95891954-3	chr3	95891849	95892049	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	56.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	19.38	11.32	15.4	7.64	15.96	18.5	11.29	21.53	18.1	27.62	22.11	14.41
Merged-chr8-119827969-3	chr8	119827882	119828082	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	12597.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	14.54	11.57	59.9	34.59	34.36	44.21	35.21	54.5	35.01	23.6	51.76	43.54
Merged-chr8-10706164-3	chr8	10706079	10706279	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	176275.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	20.59	10.31	20.54	27.75	35.59	30.42	24.58	53.1	18.49	10.04	19.09	18.48
Merged-chr3-61321818-3	chr3	61321700	61321900	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42707.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	27.86	20.37	34.23	43.44	23.73	27.28	15.94	31.65	29.9	25.61	22.11	10.96
Merged-chr7-101074682-3	chr7	101074518	101074718	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-34157.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	22.21	17.1	6.28	3.62	25.77	22.58	3.99	6.31	19.47	25.11	12.56	5.95
Merged-chr17-29054062-3	chr17	29053950	29054150	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21390.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	48.46	38.99	37.65	30.57	34.36	53.31	36.87	19.63	36.58	30.63	25.12	7.83
Merged-chr10-98946266-3	chr10	98946163	98946363	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	31111.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	25.04	12.83	15.97	23.33	21.68	8.47	19.6	25.49	21.44	14.56	34.17	16.6
Merged-chr11-97999376-3	chr11	97999260	97999460	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3187.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	39.98	28.17	16.54	5.23	12.27	56.44	14.28	8.19	57.04	40.67	42.71	23.81
Merged-chr3-142490645-3	chr3	142490554	142490754	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-6280.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	20.19	14.59	19.97	21.72	22.91	30.73	12.29	19.46	17.51	16.57	18.59	10.02
Merged-chr6-50112981-3	chr6	50112873	50113073	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	2113.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	17.36	19.12	19.4	22.12	24.55	17.87	17.27	13.96	18.49	15.06	35.68	9.08
Merged-chr5-24687922-3	chr5	24687820	24688020	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2105.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	16.96	33.2	37.08	13.67	103.5	132.95	74.41	92.38	140.44	121.51	123.61	80.2
Merged-chr17-33929898-3	chr17	33929793	33929993	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-1.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	29.07	22.13	19.4	14.48	22.91	23.52	6.98	17.69	23.8	25.61	26.63	22.87
Merged-chr1-137852446-2	chr1	137852325	137852525	+	968.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-114030.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	2.01	0.0	2.41	18.82	7.53	21.26	39.79	19.28	14.06	39.19	12.22
Merged-chr9-89205596-2	chr9	89205498	89205698	+	968.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	-5592.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	10.9	7.55	5.13	3.22	15.14	28.85	5.98	3.14	15.74	13.05	14.57	5.33
Merged-chr1-170165107-2	chr1	170165011	170165211	+	968.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133806, intron 2 of 10)	MTEa|LTR|ERVL-MaLR	9853.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	9.29	5.28	4.56	6.44	24.14	20.07	17.61	21.98	15.74	16.07	21.61	10.34
Merged-chr15-94592204-4	chr15	94592100	94592300	+	968.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2376.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	4.85	10.31	17.11	9.65	13.91	30.73	19.6	19.35	15.74	9.04	20.1	15.35
Merged-chr19-10025698-3	chr19	10025599	10025799	+	968.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	7505.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	28.27	11.57	11.98	23.73	20.86	14.42	17.94	26.16	26.36	16.07	25.63	25.06
Merged-chr11-55106788-3	chr11	55106621	55106821	+	968.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010299, intron 2 of 3)	intron (NM_010299, intron 2 of 3)	8736.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	30.69	14.84	31.95	32.18	22.09	12.86	14.28	17.69	15.14	15.06	11.56	14.41
Merged-chr4-133941647-3	chr4	133941548	133941748	+	968.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26343.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	35.94	39.74	25.1	17.29	44.59	57.38	29.56	40.93	19.08	23.6	16.08	10.65
Merged-chr7-143037525-3	chr7	143037421	143037621	+	968.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015529, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-15229.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	20.59	12.58	22.25	17.7	21.68	7.53	14.95	17.16	20.46	19.58	24.62	7.52
Merged-chr8-119926652-3	chr8	119926567	119926767	+	968.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009462, intron 1 of 13)	B1_Mur4|SINE|Alu	16307.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	31.5	19.37	12.55	25.34	27.0	19.76	17.61	23.47	16.52	6.03	29.65	27.25
Merged-chr11-106135323-3	chr11	106135219	106135419	+	968.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	24608.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	19.38	14.34	31.38	25.34	26.59	16.62	8.3	26.94	32.45	22.09	27.64	19.42
Merged-chr5-140814606-3	chr5	140814505	140814705	+	968.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	RMER17C|LTR|ERVK	15826.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	17.77	14.84	14.26	20.11	23.32	14.74	11.63	24.03	20.46	8.03	18.59	10.34
Merged-chr1-37872256-3	chr1	37872141	37872341	+	968.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037918)	promoter-TSS (NM_001037918)	35.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	11.31	12.83	20.54	18.9	24.96	19.13	14.95	22.35	21.64	26.61	33.16	9.08
Merged-chr19-60755931-3	chr19	60755846	60756046	+	968.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178421)	promoter-TSS (NM_178421)	-41.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	29.48	17.61	19.4	20.11	24.96	23.83	25.58	39.45	24.98	16.07	41.2	8.46
Merged-chr15-35371367-5	chr15	35371280	35371480	+	968.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177151)	promoter-TSS (NM_177151)	-166.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	13.33	18.11	18.25	24.94	23.73	21.32	16.94	24.84	24.59	24.1	28.14	18.48
Merged-chr2-70509334-1	chr2	70509234	70509434	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025744, exon 1 of 13)	exon (NM_025744, exon 1 of 13)	515.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	6.06	6.04	5.13	7.24	14.32	9.72	21.26	8.8	6.29	5.02	4.52	1.25
Merged-chr4-47272257-3	chr4	47272155	47272355	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64243.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	24.23	24.65	9.13	23.33	26.18	25.4	12.29	27.39	26.75	28.12	26.13	15.66
Merged-chr10-80350467-3	chr10	80350372	80350572	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2024.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	21.4	16.85	18.25	10.46	20.86	35.75	11.63	17.66	24.78	16.57	31.66	26.94
Merged-chr9-121286058-4	chr9	121285968	121286168	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8896.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	10.5	8.55	7.99	7.64	11.45	16.31	14.28	12.31	27.73	21.59	19.09	12.53
Merged-chr10-19999908-3	chr10	19999787	19999987	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	C-rich|Low_complexity|Low_complexity	65361.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	20.59	10.56	15.97	20.91	18.82	20.38	10.96	13.57	24.19	18.58	17.08	9.4
Merged-chr3-138144990-4	chr3	138144734	138144934	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348197, intron 1 of 8)	intron (NM_001348197, intron 1 of 8)	1035.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	19.38	16.35	21.68	9.25	11.45	16.31	9.63	9.17	17.11	19.58	14.07	10.96
Merged-chr2-132212463-1	chr2	132212363	132212563	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35325.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	4.04	4.53	4.56	0.8	6.55	15.68	10.63	9.64	7.67	14.56	8.04	6.89
Merged-chr5-123277510-2	chr5	123277402	123277602	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	49312.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	8.48	9.31	27.38	17.29	18.41	16.31	20.26	17.47	0.59	3.01	3.52	0.94
Merged-chr12-45092588-3	chr12	45092474	45092674	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18091.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	14.54	5.03	4.56	20.51	22.91	25.09	27.57	45.81	21.05	25.11	35.68	6.89
Merged-chr15-59264153-1	chr15	59264053	59264253	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42795.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.23	3.02	0.57	1.61	15.96	6.27	12.95	9.93	3.93	2.51	4.52	0.94
Merged-chr15-39232893-1	chr15	39232793	39232993	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	34607.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.63	3.02	4.56	11.66	12.68	5.33	5.98	10.37	5.11	2.51	7.03	4.39
Merged-chr3-89391962-3	chr3	89391893	89392093	+	968.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	76.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	16.96	14.59	15.97	11.66	21.68	10.35	5.98	15.45	19.67	27.62	15.07	15.66
Merged-chr4-35063103-3	chr4	35063024	35063224	+	968.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-88931.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	36.34	24.65	19.97	13.27	26.18	43.27	26.24	22.35	24.39	14.56	13.57	10.96
Merged-chr2-73040199-3	chr2	73040087	73040287	+	968.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59741.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	20.59	16.35	17.68	22.52	34.36	19.76	23.25	38.33	31.08	13.56	41.71	22.24
Merged-chr5-66152428-3	chr5	66152327	66152527	+	968.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-473.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	24.63	11.57	17.68	9.25	26.18	16.93	12.62	20.16	43.27	39.67	41.2	27.88
Merged-chr10-98954729-3	chr10	98954532	98954732	+	968.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	39480.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	15.75	10.56	9.7	17.7	12.27	8.47	7.31	13.35	16.72	11.05	10.55	11.9
Merged-chr13-46134803-2	chr13	46134702	46134902	+	968.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138919.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	15.75	18.61	13.12	13.67	11.86	26.34	12.95	12.25	1.97	0.0	0.0	0.0
Merged-chr17-70835308-3	chr17	70835225	70835425	+	968.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11452.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	20.59	13.33	11.41	4.42	18.0	27.59	13.95	13.04	28.91	28.62	23.62	14.41
Merged-chr1-183221485-3	chr1	183221384	183221584	+	968.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026866)	promoter-TSS (NM_026866)	45.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	15.75	22.89	10.84	22.12	26.59	22.89	19.27	26.22	23.41	32.13	47.23	26.0
Merged-chr7-4723884-2	chr7	4723785	4723985	+	968.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177887, exon 4 of 5)	exon (NM_177887, exon 4 of 5)	1197.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	7.27	6.29	9.13	7.24	13.09	13.8	8.97	13.35	18.69	15.57	21.61	12.53
Merged-chr10-77984838-3	chr10	77984760	77984960	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026431, exon 7 of 7)	3' UTR (NM_026431, exon 7 of 7)	6210.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	16.15	12.32	6.85	23.33	15.55	19.13	5.31	13.93	18.29	19.58	33.16	15.66
Merged-chr15-27926649-3	chr15	27926555	27926755	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	37.15	28.67	27.95	14.88	39.27	47.35	15.61	16.63	55.86	47.7	48.24	24.12
Merged-chr16-58479154-3	chr16	58479061	58479261	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44265.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	10.09	14.09	12.55	20.11	16.36	15.68	10.96	18.5	16.33	14.06	30.65	12.84
Merged-chr14-31435337-3	chr14	31435251	31435451	+	968.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 1 of 8)	CpG	749.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.08	4.53	10.27	18.1	13.91	15.37	15.61	16.99	7.28	11.55	11.56	13.47
Merged-chr11-106501425-3	chr11	106501307	106501507	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030703)	TTS (NR_030703)	416.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	9.69	15.09	15.4	7.24	13.5	12.54	4.98	6.25	13.57	12.05	15.07	11.28
Merged-chr16-4782695-3	chr16	4782592	4782792	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	6770.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	28.67	29.68	18.83	16.09	27.0	23.83	19.93	22.49	40.71	24.6	24.12	13.16
Merged-chr10-75490926-3	chr10	75490833	75491033	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	26448.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	15.75	18.11	15.97	12.87	20.46	17.56	12.62	28.77	30.09	30.13	24.62	11.59
Merged-chr10-94545682-3	chr10	94545586	94545786	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-5186.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	15.34	31.69	23.39	17.29	20.05	13.17	7.31	12.22	21.44	9.04	9.04	11.28
Merged-chr9-21135716-3	chr9	21135593	21135793	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4418.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	18.98	23.14	18.83	14.88	17.59	23.52	17.94	19.93	44.06	28.62	29.14	15.66
Merged-chr10-119062217-3	chr10	119062130	119062330	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11731.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	25.84	12.07	14.26	16.49	31.09	30.73	34.88	45.65	41.3	27.11	52.76	24.75
Merged-chr3-27643255-1	chr3	27643155	27643355	+	968.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-58260.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	4.85	2.01	5.13	11.26	15.96	3.45	11.29	10.65	4.33	8.54	7.54	10.34
Merged-chr5-99254857-3	chr5	99254748	99254948	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	16.56	14.34	23.39	7.24	14.73	28.85	13.95	11.52	16.33	16.57	15.58	11.28
Merged-chr11-69998883-3	chr11	69998804	69999004	+	968.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291127, exon 3 of 4)	exon (NM_001291127, exon 3 of 4)	1442.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	14.13	13.08	19.97	14.88	19.64	10.98	14.95	11.89	12.98	24.6	16.58	15.04
Merged-chr8-18699450-6	chr8	18699381	18699581	+	968.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007426, intron 5 of 8)	L3|LINE|CR1	42081.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	3.63	7.55	4.56	8.85	19.64	13.48	23.25	16.65	6.29	7.53	6.53	10.96
Merged-chr12-111744236-3	chr12	111744126	111744326	+	968.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-14623.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	12.52	10.56	19.4	13.27	14.73	13.8	4.32	22.74	22.82	19.08	22.11	10.65
Merged-chr19-46483789-3	chr19	46483670	46483870	+	968.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17878.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	39.57	20.63	11.98	31.37	30.68	29.48	36.21	41.69	26.36	30.63	53.77	25.69
Merged-chr2-103958348-2	chr2	103958247	103958447	+	968.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	L2b|LINE|L2	352.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.06	5.53	13.12	6.84	18.41	14.11	15.61	10.51	19.47	10.04	16.58	11.59
Merged-chr6-115505117-3	chr6	115505025	115505225	+	968.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39579.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	30.28	22.64	38.22	42.63	33.55	18.19	21.26	40.4	34.62	9.54	22.11	24.12
Merged-chr1-121464719-3	chr1	121464624	121464824	+	968.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 11 of 23)	intron (NM_029955, intron 11 of 23)	33657.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	27.46	21.63	45.64	34.19	18.0	6.59	14.28	24.11	23.21	22.09	38.69	16.92
Merged-chr12-112894727-2	chr12	112894622	112894822	+	968.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25819.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	11.31	17.61	12.55	15.28	17.59	20.7	10.96	14.58	11.01	3.51	6.03	3.13
Merged-chr9-108831781-3	chr9	108831663	108831863	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359573, exon 2 of 36)	exon (NM_001359573, exon 2 of 36)	5718.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	18.57	10.56	25.67	18.5	16.36	39.2	21.26	27.84	33.44	33.14	43.21	15.98
Merged-chr9-48492098-3	chr9	48491984	48492184	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	3246.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	21.8	26.91	23.96	11.26	21.27	40.45	17.27	8.66	30.29	30.13	17.08	13.78
Merged-chr16-18249525-3	chr16	18249427	18249627	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	644.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	19.79	13.58	18.25	18.1	16.36	17.56	18.6	17.33	21.64	14.56	38.69	17.23
Merged-chr5-17821615-3	chr5	17821520	17821720	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	14276.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	23.82	5.79	18.83	30.16	20.86	9.41	10.63	23.92	24.98	18.08	28.64	18.48
Merged-chr7-25719499-3	chr7	25719385	25719585	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	-432.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	26.25	16.35	26.24	17.29	30.68	34.18	7.31	18.36	29.9	33.14	10.55	11.28
Merged-chr19-24176834-1	chr19	24176734	24176934	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-2645.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	18.98	13.33	15.97	18.9	0.82	0.0	1.33	0.31	6.1	2.51	1.51	8.46
Merged-chr17-34124428-1	chr17	34124328	34124528	+	968.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010386, intron 1 of 5)	B1_Mm|SINE|Alu	-1090.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	2.83	5.03	0.0	0.4	2.45	4.7	2.33	1.12	20.06	21.09	20.1	11.9
Merged-chr3-135192084-3	chr3	135191975	135192175	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20488.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	20.59	13.33	21.11	33.38	17.18	13.48	16.94	48.03	12.98	12.05	24.62	24.43
Merged-chr2-155107447-3	chr2	155107348	155107548	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7369.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	21.8	18.36	19.97	20.51	25.36	21.95	12.62	7.54	20.85	21.59	21.1	12.22
Merged-chr2-160627407-3	chr2	160627381	160627581	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18416.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	13.33	11.82	5.13	13.67	10.23	8.78	14.28	13.15	9.05	10.04	11.05	8.14
Merged-chr15-72809201-3	chr15	72809116	72809316	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1108.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	21.0	11.57	5.7	8.04	16.36	10.03	6.64	15.25	24.39	18.58	21.1	23.49
Merged-chr18-39620073-2	chr18	39619983	39620183	+	968.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132838.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.44	4.53	5.7	1.61	13.91	18.5	13.95	10.51	15.34	14.56	7.54	11.28
Merged-chr11-26637224-2	chr11	26637112	26637312	+	968.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-43292.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	1.21	2.01	0.0	1.61	3.68	6.9	9.97	8.24	18.88	11.55	18.09	17.23
Merged-chr18-39416582-2	chr18	39416480	39416680	+	968.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70665.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	21.0	14.34	15.4	16.09	27.0	19.76	8.3	22.65	9.24	11.05	16.58	10.02
Merged-chr2-118256804-4	chr2	118256726	118256926	+	968.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027759, exon 1 of 11)	5' UTR (NM_027759, exon 1 of 11)	140.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	15.34	8.8	11.98	12.87	12.27	15.05	11.63	10.21	24.39	24.1	27.64	11.59
Merged-chr10-70287521-3	chr10	70287428	70287628	+	968.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42252.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	17.77	11.57	10.27	11.26	21.68	19.44	15.28	30.17	26.36	23.6	42.21	24.43
Merged-chr14-8080999-3	chr14	8080899	8081099	+	968.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025938, intron 1 of 5)	intron (NM_025938, intron 1 of 5)	686.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	14.13	9.81	8.56	19.31	27.41	25.09	16.28	31.07	29.11	15.57	35.68	19.42
Merged-chr3-69607063-3	chr3	69606985	69607185	+	968.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8125.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	41.19	26.91	42.78	34.99	38.05	42.33	18.27	40.12	32.85	47.7	16.58	22.87
Merged-chr13-110627835-2	chr13	110627732	110627932	+	968.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	232788.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.85	0.5	4.56	9.65	33.55	22.58	34.88	44.16	13.96	15.57	27.64	22.87
Merged-chr18-61640793-3	chr18	61640696	61640896	+	968.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045420, intron 1 of 2)	L3|LINE|CR1	1143.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	26.65	13.08	7.99	16.89	18.41	44.21	17.27	12.73	32.45	47.2	23.62	25.37
Merged-chr6-125088794-3	chr6	125088717	125088917	+	968.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7164.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	25.84	13.58	16.54	15.69	32.32	19.76	31.56	23.19	10.42	10.04	22.11	18.8
Merged-chr10-8858398-3	chr10	8858300	8858500	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	21.0	18.36	29.09	11.26	32.73	22.26	20.59	34.82	24.59	23.1	23.62	21.93
Merged-chr3-132115935-3	chr3	132115822	132116022	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	30630.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	16.15	9.31	19.4	37.4	26.18	18.19	37.54	39.81	34.62	25.11	40.7	31.33
Merged-chr5-134102094-3	chr5	134101998	134102198	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2350.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	14.13	12.58	19.4	15.28	14.32	18.5	16.28	16.32	21.05	15.06	22.11	11.9
Merged-chr17-44076195-3	chr17	44076109	44076309	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2593.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	14.13	25.66	23.39	18.5	19.23	11.6	10.63	12.84	46.22	52.22	45.73	35.09
Merged-chr3-86894661-3	chr3	86894568	86894768	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	26216.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	22.21	27.17	28.52	56.71	29.46	41.39	33.88	52.29	14.75	13.56	31.15	12.22
Merged-chr7-19501864-3	chr7	19501762	19501962	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6469.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	27.46	14.09	14.83	10.05	27.82	30.73	25.58	32.75	42.29	38.16	41.71	18.8
Merged-chr4-62287623-3	chr4	62287541	62287741	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	1212.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	20.19	14.34	15.4	14.48	19.64	12.86	18.6	20.55	21.44	28.62	56.28	19.11
Merged-chrX-13574439-1	chrX	13574339	13574539	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284503, intron 12 of 26)	intron (NM_001284503, intron 12 of 26)	-58330.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	4.44	5.28	5.7	4.83	5.32	2.2	8.3	10.18	4.33	6.53	9.55	1.57
Merged-chr7-68799140-1	chr7	68799040	68799240	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49902.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	1.21	4.53	2.28	3.22	14.73	4.08	19.6	15.81	5.11	4.02	7.03	1.25
Merged-chr6-82807279-1	chr6	82807179	82807379	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32825.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.85	2.77	5.7	0.8	3.27	2.82	10.3	7.63	6.49	5.02	4.52	5.64
Merged-chr11-103217890-3	chr11	103217798	103217998	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177801, intron 1 of 4)	intron (NM_177801, intron 1 of 4)	534.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	24.63	13.83	25.67	15.28	14.73	21.64	4.65	14.41	15.74	20.08	14.07	12.53
Merged-chr7-80775482-3	chr7	80775397	80775597	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	B3|SINE|B2	27834.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	11.31	10.06	22.82	19.71	10.23	17.87	9.3	19.35	24.0	15.57	21.1	23.49
Merged-chr18-70476564-3	chr18	70476472	70476672	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	3906.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	18.98	17.61	15.97	32.58	33.96	39.82	27.24	30.25	43.86	50.71	68.84	23.49
Merged-chr17-10335505-1	chr17	10335405	10335605	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	10903.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	6.86	11.32	7.99	2.01	5.73	13.48	9.3	8.07	6.69	8.54	6.03	4.7
Merged-chr14-70361646-3	chr14	70361550	70361750	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-10226.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	19.38	7.55	18.83	22.12	17.18	22.26	15.61	10.74	32.65	9.04	28.64	13.47
Merged-chr9-120881352-2	chr9	120881251	120881451	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	33899.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	9.69	18.61	13.69	15.69	18.0	18.19	15.61	24.64	0.79	0.0	1.0	0.94
Merged-chr7-45538800-3	chr7	45538620	45538820	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148927, intron 8 of 19)	intron (NM_148927, intron 8 of 19)	12390.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	12.11	17.61	14.26	16.09	27.0	26.65	20.93	10.57	12.59	8.54	9.55	18.48
Merged-chr2-101733451-1	chr2	101733351	101733551	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	55031.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.85	3.77	3.42	8.04	7.77	1.57	2.66	10.01	4.72	5.02	3.52	4.07
Merged-chr14-8095555-3	chr14	8095457	8095657	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2654.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	18.17	16.6	26.24	26.14	26.59	19.76	31.22	50.61	35.01	11.55	35.17	16.92
Merged-chr11-78475455-3	chr11	78475365	78475565	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168521, intron 7 of 8)	ORR1F|LTR|ERVL-MaLR	9764.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	13.33	11.82	11.98	20.91	29.46	14.42	11.96	18.53	30.68	21.59	25.63	6.58
Merged-chr5-125189022-3	chr5	125188930	125189130	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-9816.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	29.48	16.85	22.82	8.85	40.09	33.87	24.25	40.21	36.98	26.61	30.65	32.27
Merged-chr1-84203782-1	chr1	84203682	84203882	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	15179.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	6.46	4.53	9.13	9.65	11.86	6.59	2.66	9.7	7.28	5.02	8.04	3.76
Merged-chr12-77057011-1	chr12	77056911	77057111	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94763.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.23	2.77	2.85	1.61	1.23	2.82	9.3	7.82	1.57	2.01	7.03	2.19
Merged-chr9-110887692-3	chr9	110887590	110887790	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7368.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	14.94	14.84	15.97	6.44	11.05	11.92	10.3	15.0	14.75	10.04	20.6	16.29
Merged-chr7-83632418-1	chr7	83632318	83632518	+	968.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023377, intron 1 of 5)	intron (NM_023377, intron 1 of 5)	401.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	11.31	8.55	5.7	7.24	12.68	10.98	10.96	12.84	10.62	7.53	14.57	4.7
Merged-chr4-150891482-3	chr4	150891380	150891580	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18441.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	21.0	11.32	19.97	18.5	12.27	25.71	17.94	14.07	15.74	5.52	7.03	8.14
Merged-chr7-110715781-2	chr7	110715677	110715877	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52429.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.4	4.53	0.0	0.8	11.45	13.8	3.65	10.29	19.47	17.57	17.08	6.89
Merged-chr11-102999455-1	chr11	102999355	102999555	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_105896)	TTS (NR_105896)	466.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	14.54	21.38	26.24	16.49	0.0	0.63	0.33	0.84	1.18	0.0	0.0	0.31
Merged-chr7-63930274-3	chr7	63930182	63930382	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	8633.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	14.94	15.59	29.66	19.71	32.32	31.98	18.27	26.3	29.9	32.64	56.78	17.23
Merged-chr17-31637350-3	chr17	31637241	31637441	+	967.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144855)	promoter-TSS (NM_144855)	-136.0	NM_178224	12411.0	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	20.59	11.82	17.11	20.91	8.18	16.62	19.27	20.3	16.52	7.03	8.54	14.72
Merged-chr16-17804715-3	chr16	17804535	17804735	+	967.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153790, intron 8 of 10)	intron (NM_153790, intron 8 of 10)	7353.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	8.48	10.82	6.28	6.03	11.45	10.66	5.31	9.0	9.44	10.04	11.56	10.02
Merged-chr8-53626366-3	chr8	53626263	53626463	+	967.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	12702.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	17.77	22.64	14.26	14.88	9.0	17.56	9.97	13.77	34.81	22.59	39.19	11.28
Merged-chr19-4260721-3	chr19	4260623	4260823	+	967.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356620)	TTS (NM_001356620)	3155.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	29.07	32.45	43.35	12.87	38.05	35.12	27.24	16.29	32.65	39.16	35.68	20.05
Merged-chr3-115695787-3	chr3	115695683	115695883	+	967.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19272.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	31.9	15.59	13.12	25.74	49.91	31.04	52.48	45.22	21.24	30.13	28.64	26.0
Merged-chr6-72402055-3	chr6	72401954	72402154	+	967.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11387.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	19.79	13.33	6.28	4.02	25.36	23.2	16.94	21.34	22.62	18.58	27.13	8.14
Merged-chr2-166448903-3	chr2	166448788	166448988	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	1437.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	22.21	8.05	11.98	15.28	29.05	27.91	23.58	36.56	38.55	30.63	43.72	24.12
Merged-chr4-88438105-3	chr4	88438006	88438206	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 1 of 6)	intron (NM_025760, intron 1 of 6)	820.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	14.13	6.54	16.54	13.27	18.41	14.11	11.29	23.94	16.92	15.57	29.65	13.78
Merged-chr12-85518399-3	chr12	85518288	85518488	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44498.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	21.4	14.09	10.27	14.08	27.0	23.83	14.28	14.78	22.23	21.59	32.66	18.8
Merged-chr18-9707613-3	chr18	9707520	9707720	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-28.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	14.94	16.1	14.83	16.89	38.46	30.1	27.57	39.84	13.37	17.07	15.58	11.9
Merged-chr11-113422716-4	chr11	113422560	113422760	+	967.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	143155.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	15.75	11.57	11.41	18.5	45.0	38.26	54.48	51.0	6.88	17.07	10.05	6.27
Merged-chr2-6085958-3	chr2	6085875	6086075	+	967.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44210.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	15.75	16.1	10.84	24.94	22.91	25.4	35.21	36.2	25.77	19.58	20.6	20.68
Merged-chr10-62945322-3	chr10	62945227	62945427	+	967.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-1702.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	13.73	15.85	19.4	24.53	18.0	22.26	15.61	30.76	19.47	8.54	25.12	21.62
Merged-chr10-121034011-3	chr10	121033941	121034141	+	967.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	37.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	9.29	15.09	14.83	23.33	20.46	15.37	16.28	14.24	12.39	7.53	16.58	11.59
Merged-chr13-10109872-3	chr13	10109783	10109983	+	967.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	250920.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	6.06	10.56	23.96	53.49	41.32	22.26	45.51	71.38	25.96	34.14	63.82	25.69
Merged-chr18-38297455-3	chr18	38297348	38297548	+	967.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164621, intron 1 of 9)	MIR|SINE|MIR	643.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	21.0	28.42	19.4	24.13	36.82	41.39	9.63	25.37	33.24	31.13	54.27	13.16
Merged-chr4-132809868-3	chr4	132809725	132809925	+	967.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13461.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	14.13	14.59	7.99	28.96	11.05	15.37	11.96	15.79	11.01	6.03	28.64	16.6
Merged-chr13-89739626-3	chr13	89739518	89739718	+	967.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081249, intron 1 of 14)	CpG	2894.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	6.86	21.63	15.97	17.29	15.55	17.56	24.58	14.72	22.82	21.59	16.58	17.86
Merged-chr8-46888739-3	chr8	46888608	46888808	+	967.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98179.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.04	9.06	33.09	24.53	18.82	15.05	43.85	50.07	13.37	9.04	29.65	20.68
Merged-chrX-159627397-5	chrX	159627311	159627511	+	967.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001135727, exon 1 of 18)	5' UTR (NM_001135727, exon 1 of 18)	139.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	9.29	16.85	17.11	12.07	11.45	19.76	18.27	10.07	7.28	10.54	9.55	9.71
Merged-chr5-149185021-3	chr5	149184897	149185097	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115151, intron 1 of 8)	CpG	437.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	15.75	11.82	15.97	23.33	13.91	13.48	14.95	20.69	18.88	16.57	16.58	12.53
Merged-chr13-73803535-3	chr13	73803425	73803625	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	39828.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	33.11	24.4	34.8	10.86	49.09	45.78	30.56	51.53	46.81	38.16	57.28	27.57
Merged-chr14-55142070-3	chr14	55141973	55142173	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25138.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	16.15	15.09	29.09	10.05	42.96	18.19	22.92	25.29	38.16	28.62	47.23	39.78
Merged-chr2-75938488-3	chr2	75938389	75938589	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028235)	promoter-TSS (NM_028235)	-27.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	11.31	16.85	14.83	18.5	24.14	25.4	26.24	16.49	20.85	32.13	15.07	12.53
Merged-chr6-31809982-3	chr6	31809879	31810079	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143848.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	4.85	13.33	37.08	14.88	72.82	103.17	52.48	57.53	64.71	33.14	47.23	25.69
Merged-chr8-126696610-3	chr8	126696496	126696696	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103160.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	14.94	9.31	16.54	14.48	20.46	14.74	16.94	22.04	27.14	15.57	34.17	14.41
Merged-chr10-70297000-3	chr10	70296931	70297131	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51755.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	12.92	20.63	11.98	19.31	18.0	21.95	8.97	32.02	27.14	17.57	22.11	15.35
Merged-chr6-88030606-3	chr6	88030512	88030712	+	967.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-10817.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	17.36	11.07	13.69	16.89	26.18	13.48	9.63	21.14	30.49	23.6	18.09	23.49
Merged-chr5-137672105-3	chr5	137672007	137672207	+	967.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303271, intron 1 of 12)	intron (NM_001303271, intron 1 of 12)	12646.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	24.63	12.07	22.25	8.45	54.82	47.66	30.56	30.28	34.62	59.25	25.63	27.88
Merged-chr4-99478751-3	chr4	99478644	99478844	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177555.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	15.34	9.56	21.68	25.74	11.86	21.32	25.58	50.44	32.85	26.61	52.26	24.75
Merged-chr10-125735922-3	chr10	125735814	125736014	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-230305.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	17.77	10.06	28.52	32.98	31.5	16.31	22.26	40.01	26.95	29.62	61.81	26.31
Merged-chr11-20193275-3	chr11	20193179	20193379	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8133.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	12.92	11.07	15.4	20.51	23.73	14.74	15.94	20.89	22.23	15.57	26.63	10.34
Merged-chr17-81704914-3	chr17	81704808	81705008	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33479.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	27.86	9.56	23.96	34.99	48.68	31.04	44.84	59.22	41.7	20.59	32.16	24.75
Merged-chr1-181014912-3	chr1	181014829	181015029	+	967.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	2640.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	23.42	14.34	45.07	55.91	13.5	13.8	59.46	62.33	14.75	10.54	35.17	26.94
Merged-chr11-70653692-6	chr11	70653611	70653811	+	967.695801	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011072, intron 1 of 2)	intron (NM_011072, intron 1 of 2)	939.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	18.57	23.14	12.55	21.32	13.5	24.46	16.94	5.19	30.88	33.64	25.12	12.53
Merged-chr2-90589587-3	chr2	90589468	90589668	+	967.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8921.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	16.56	29.68	35.94	16.49	13.5	16.62	14.95	17.33	18.88	10.54	20.6	12.53
Merged-chr4-119992005-1	chr4	119991905	119992105	+	967.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	-169201.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.44	2.52	7.99	2.01	12.27	15.05	9.97	9.7	4.33	4.02	9.55	2.51
Merged-chr17-40873675-3	chr17	40873574	40873774	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6884.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	29.48	7.55	17.11	18.9	14.73	3.76	12.95	20.33	13.37	19.58	22.11	11.28
Merged-chr4-106910344-3	chr4	106910228	106910428	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1142.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	10.9	19.37	10.27	22.93	14.73	26.03	11.29	17.92	38.16	21.59	38.69	14.41
Merged-chr10-43504543-3	chr10	43504442	43504642	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359600, intron 3 of 3)	intron (NM_001359600, intron 3 of 3)	11377.0	NM_001359600	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	46.03	37.73	40.5	16.89	28.23	68.99	14.95	16.18	35.01	39.67	23.62	10.02
Merged-chr11-115185114-1	chr11	115185014	115185214	+	967.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025400, exon 3 of 7)	exon (NM_025400, exon 3 of 7)	2202.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.4	2.77	1.71	3.62	2.45	2.2	1.66	1.37	16.72	13.56	34.67	20.68
Merged-chr15-59430531-1	chr15	59430431	59430631	+	967.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	56333.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	7.27	2.26	13.69	4.42	14.73	18.81	8.97	14.97	2.56	3.01	3.01	1.88
Merged-chr12-3236877-3	chr12	3236770	3236970	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	1079.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	12.11	6.04	5.13	16.89	9.0	13.48	3.99	9.95	18.1	6.03	17.08	18.8
Merged-chr6-15720882-6	chr6	15720793	15720993	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175088, exon 1 of 5)	5' UTR (NM_175088, exon 1 of 5)	232.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	15.75	21.88	24.53	23.73	20.46	21.32	29.56	23.1	18.29	27.62	30.15	27.57
Merged-chr6-122939793-3	chr6	122939680	122939880	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12735.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	21.0	16.1	7.42	21.72	35.18	16.31	26.57	35.52	26.16	28.12	29.65	29.76
Merged-chr4-133847906-1	chr4	133847806	133848006	+	967.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	26825.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.81	0.5	0.0	0.8	0.0	0.31	0.0	1.12	28.52	12.05	14.57	15.66
Merged-chr12-17455368-2	chr12	17455267	17455467	+	967.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-89506.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.42	15.85	18.83	14.08	15.55	16.93	24.91	18.14	7.28	10.54	5.02	3.76
Merged-chr5-129940950-3	chr5	129940846	129941046	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-1163.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	16.56	14.09	21.68	13.27	16.77	20.07	15.28	19.71	21.24	27.11	14.57	12.22
Merged-chr17-65699010-3	chr17	65698960	65699160	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-56856.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	14.54	10.56	10.27	10.86	13.5	16.31	9.63	25.15	16.33	16.07	21.61	12.84
Merged-chr12-40553792-3	chr12	40553697	40553897	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	107744.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	14.13	8.8	18.25	9.65	16.77	14.42	16.28	12.36	22.82	16.57	22.11	17.54
Merged-chr16-92870384-3	chr16	92870293	92870493	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44319.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	11.71	13.58	7.99	5.63	21.27	47.66	8.97	12.53	27.34	26.11	16.58	10.34
Merged-chr11-120629569-3	chr11	120629461	120629661	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010756, exon 3 of 3)	exon (NM_010756, exon 3 of 3)	3986.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	16.15	13.08	15.97	13.27	12.27	24.15	8.64	16.79	22.82	20.59	43.21	16.92
Merged-chr5-5809468-2	chr5	5809378	5809578	+	967.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60161.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	3.23	2.52	8.56	4.83	10.23	27.59	19.27	22.88	15.93	25.11	19.6	15.98
Merged-chr16-65458431-3	chr16	65458318	65458518	+	967.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62211.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	43.21	35.72	23.96	16.09	45.0	65.54	37.2	35.27	58.02	67.28	46.73	9.4
Merged-chr16-94240358-3	chr16	94240243	94240443	+	967.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	L1MB4|LINE|L1	49948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	17.77	7.8	22.82	12.47	13.91	11.29	9.3	21.67	13.37	20.08	28.64	14.41
Merged-chr10-44598912-3	chr10	44598827	44599027	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	11.71	13.33	13.69	15.28	13.5	9.41	15.61	21.03	17.51	12.05	15.07	13.78
Merged-chr16-36817519-3	chr16	36817415	36817615	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8810.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	35.94	22.39	16.54	26.55	23.73	18.81	11.96	17.47	19.67	20.59	20.1	8.14
Merged-chr7-14534131-2	chr7	14534043	14534243	+	967.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28028.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	2.02	2.77	4.56	7.24	21.27	16.62	21.92	21.22	17.7	16.57	14.57	15.35
Merged-chr8-3493174-3	chr8	3493102	3493302	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	64.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	11.71	27.42	22.25	28.56	21.27	29.48	33.22	35.75	27.14	27.11	48.24	23.81
Merged-chr15-86170386-2	chr15	86170280	86170480	+	967.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15348.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.44	3.52	8.56	8.04	13.91	14.74	21.59	8.1	12.59	14.56	18.59	13.47
Merged-chr8-111062645-3	chr8	111062543	111062743	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6304.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	32.71	25.15	37.65	38.21	6.95	21.01	17.27	16.91	18.49	34.65	27.64	13.16
Merged-chr4-120405541-3	chr4	120405450	120405650	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013883, intron 1 of 16)	CpG	269.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	12.92	17.86	13.69	18.1	16.36	9.72	15.94	16.79	19.28	6.03	17.08	13.16
Merged-chr11-76590011-3	chr11	76589902	76590102	+	967.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12263.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	18.98	14.09	8.56	2.82	20.46	27.91	11.63	12.06	40.52	30.63	23.11	16.29
Merged-chr6-126702175-3	chr6	126702067	126702267	+	967.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38507.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	25.44	17.86	59.9	21.72	22.5	10.98	15.28	22.99	22.03	14.56	22.11	34.77
Merged-chr7-98334136-3	chr7	98334037	98334237	+	967.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12929.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	32.71	13.83	41.07	37.81	32.32	10.98	36.21	50.61	23.21	11.05	35.17	25.37
Merged-chr19-45074575-4	chr19	45074476	45074676	+	967.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-665.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	12.11	17.86	12.55	11.26	8.18	9.41	6.31	7.23	15.14	16.07	13.57	13.16
Merged-chr5-66102971-3	chr5	66102866	66103066	+	967.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	B4|SINE|B4	-4787.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	17.77	13.83	26.24	18.9	29.86	21.95	18.93	29.72	13.57	12.55	25.12	8.46
Merged-chr8-66346127-2	chr8	66346039	66346239	+	967.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	Lx5|LINE|L1	-40162.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	3.52	2.28	2.41	17.18	14.11	8.97	21.31	13.57	17.07	18.59	16.6
Merged-chr5-3491373-3	chr5	3491246	3491446	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-52487.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	15.34	18.36	15.97	27.35	40.91	44.84	38.53	32.78	42.09	40.17	48.24	16.29
Merged-chr6-35236569-3	chr6	35236470	35236670	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027513, intron 34 of 42)	intron (NM_027513, intron 34 of 42)	-16129.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	16.56	16.6	24.53	17.7	11.86	18.5	22.26	20.47	19.08	20.08	39.19	18.17
Merged-chr11-106815592-3	chr11	106815482	106815682	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177088, exon 15 of 20)	exon (NM_177088, exon 15 of 20)	26330.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	30.28	40.24	21.11	16.89	31.5	65.54	15.28	16.09	45.83	26.61	31.66	10.65
Merged-chr10-53876111-3	chr10	53875999	53876199	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125190.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	2.42	4.02	14.83	17.7	16.36	31.67	67.1	72.03	15.74	19.58	40.7	22.87
Merged-chr2-174329169-4	chr2	174329087	174329287	+	967.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-883.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	26.65	15.34	13.12	26.95	22.09	22.26	22.26	13.63	15.34	20.59	20.1	16.92
Merged-chr1-45861790-3	chr1	45861695	45861895	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63799.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	18.57	13.33	31.95	25.34	27.41	14.42	30.89	37.91	19.67	8.54	31.15	18.8
Merged-chr17-79615306-3	chr17	79615211	79615411	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201361, intron 1 of 10)	CpG	411.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	11.71	16.35	8.56	25.34	21.68	15.05	30.89	24.25	20.65	26.11	27.64	18.48
Merged-chr2-94405045-3	chr2	94404950	94405150	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	1639.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	15.34	6.04	15.97	10.86	16.36	23.52	12.29	17.66	15.93	16.57	22.61	13.16
Merged-chr6-108443511-3	chr6	108443401	108443601	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-46242.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	8.08	4.78	15.4	20.11	15.14	13.8	31.22	37.32	26.95	15.06	26.13	19.74
Merged-chr16-58408924-1	chr16	58408824	58409024	+	967.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028523, exon 1 of 16)	exon (NM_028523, exon 1 of 16)	389.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	5.25	2.52	7.99	13.67	15.96	10.98	22.59	15.39	7.28	7.53	6.03	4.07
Merged-chr2-166018954-3	chr2	166018831	166019031	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	26294.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	21.4	19.12	18.83	11.66	15.55	17.56	16.94	17.13	24.78	7.03	32.16	10.02
Merged-chr2-57123737-3	chr2	57123629	57123829	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	CpG	274.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	10.09	6.54	19.97	25.74	22.09	32.3	38.86	27.2	27.93	16.57	26.63	31.64
Merged-chr17-48270026-3	chr17	48269929	48270129	+	967.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	5734.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	8.48	11.32	28.52	19.31	16.36	18.19	14.28	24.06	18.49	17.07	22.61	14.72
Merged-chr19-36006469-3	chr19	36006379	36006579	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360298, intron 1 of 2)	MER54A|LTR|ERVL	50881.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	12.11	10.06	11.98	21.32	3.68	14.42	21.26	16.63	15.34	4.02	28.14	12.22
Merged-chr17-35125293-3	chr17	35125196	35125396	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001128597)	TTS (NM_001128597)	-1106.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	27.86	19.87	22.82	12.87	28.64	36.06	19.27	24.64	32.45	39.16	29.14	22.87
Merged-chr2-125731926-3	chr2	125731837	125732037	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7789.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	18.57	19.62	34.8	21.72	29.05	29.16	25.91	20.05	18.49	16.57	29.14	9.08
Merged-chr7-6171604-3	chr7	6171512	6171712	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-901.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	17.36	15.09	11.41	24.53	24.96	30.1	16.28	26.66	33.24	36.65	29.14	24.75
Merged-chr19-41374755-3	chr19	41374651	41374851	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	10319.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	18.17	6.29	16.54	15.28	18.0	16.62	12.62	12.42	19.08	14.56	27.64	5.64
Merged-chr16-14112376-3	chr16	14112259	14112459	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46915.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	14.13	12.07	9.7	15.69	26.18	26.03	11.29	35.5	18.69	21.59	36.68	11.9
Merged-chr19-40630262-3	chr19	40630129	40630329	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1M4a1|LINE|L1	17863.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	12.52	16.1	24.53	11.26	10.64	13.17	10.63	23.64	19.67	27.62	29.14	20.68
Merged-chr12-79171744-3	chr12	79171657	79171857	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	701.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	22.61	25.15	12.55	13.67	44.59	27.59	28.9	24.39	27.54	23.6	25.63	11.9
Merged-chr12-55466440-3	chr12	55466355	55466555	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26192.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	23.42	25.4	36.51	16.09	48.27	57.38	33.55	39.62	45.83	50.21	32.16	26.31
Merged-chr10-44679740-3	chr10	44679641	44679841	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-220993.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	32.3	40.24	26.24	9.25	31.5	67.73	13.62	8.72	39.34	29.62	24.12	9.08
Merged-chr2-93475209-3	chr2	93475114	93475314	+	967.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12264.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	21.8	15.34	25.67	21.32	21.27	19.13	5.31	20.02	38.35	25.11	23.62	16.29
Merged-chr11-95828305-3	chr11	95828179	95828379	+	967.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	MIRb|SINE|MIR	3779.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	11.71	12.83	7.99	11.26	15.14	20.7	21.92	14.1	16.72	17.07	22.11	16.6
Merged-chr1-171823370-3	chr1	171823272	171823472	+	967.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16325.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	23.02	24.4	30.8	52.69	26.18	30.1	20.59	34.07	21.83	11.55	28.64	12.84
Merged-chr12-36208669-2	chr12	36208578	36208778	+	967.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027699, exon 5 of 5)	exon (NM_027699, exon 5 of 5)	9540.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	17.36	9.31	3.99	6.03	9.41	12.54	6.98	13.04	2.36	0.5	1.51	0.31
Merged-chr4-148655163-3	chr4	148655076	148655276	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	11859.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	17.36	20.88	6.85	11.66	12.27	19.44	12.62	8.75	46.42	52.72	46.23	21.62
Merged-chr9-118619145-3	chr9	118619077	118619277	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	12468.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	31.5	13.33	41.07	59.93	60.55	52.68	82.05	101.08	37.57	28.62	51.76	34.77
Merged-chr3-8968831-3	chr3	8968712	8968912	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-4666.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	17.36	19.37	27.38	14.88	22.91	12.54	20.59	28.99	31.27	16.07	21.1	21.93
Merged-chr4-126255646-3	chr4	126255539	126255739	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	680.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	21.4	18.61	10.27	18.5	13.91	26.34	14.28	9.98	27.34	22.59	24.62	21.3
Merged-chr15-84557782-3	chr15	84557676	84557876	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177630)	promoter-TSS (NM_177630)	47.0	NM_177630	223732.0	Mm.6471	NM_177630	ENSMUSG00000055745	Rtl6	BC058638|Ldoc1l|Mar6|Mart6	retrotransposon Gag like 6	protein-coding	17.77	13.83	7.99	16.89	19.64	24.15	10.96	13.51	18.1	23.6	31.15	15.35
Merged-chr10-79883431-3	chr10	79883318	79883518	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011178)	TTS (NM_011178)	-2894.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	22.21	11.82	23.96	10.05	19.23	16.31	12.95	26.33	23.6	27.62	32.16	17.54
Merged-chr4-99829209-3	chr4	99829144	99829344	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145549)	promoter-TSS (NM_145549)	-126.0	NM_026348	67733.0	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	13.73	17.86	15.4	10.05	15.96	13.8	22.59	14.19	18.49	18.58	12.56	14.41
Merged-chr6-146170820-5	chr6	146170698	146170898	+	967.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 51 of 56)	ORR1E|LTR|ERVL-MaLR	236676.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	11.71	12.58	17.11	15.69	29.86	38.26	39.53	27.56	17.31	40.17	35.17	17.54
Merged-chr9-15493456-3	chr9	15493350	15493550	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359604)	promoter-TSS (NM_001359604)	18.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	19.79	16.6	13.12	26.55	18.0	21.95	17.94	25.26	16.13	5.02	21.1	11.28
Merged-chr8-25275257-3	chr8	25275160	25275360	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31010.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	44.82	30.69	9.7	19.71	37.64	67.42	23.58	23.1	45.24	48.7	33.16	13.47
Merged-chr5-23975203-3	chr5	23975126	23975326	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	55086.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	20.59	19.37	14.26	21.72	40.09	71.49	59.46	60.34	31.08	30.13	32.66	20.99
Merged-chr17-26466904-3	chr17	26466797	26466997	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41575.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	25.84	11.07	9.7	12.87	22.91	22.26	12.95	16.46	19.87	14.06	23.62	14.72
Merged-chr10-84340322-3	chr10	84340213	84340413	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100158.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	23.42	17.1	37.65	32.98	26.18	16.93	39.2	45.5	20.26	17.57	35.17	11.28
Merged-chr18-69085149-1	chr18	69085049	69085249	+	967.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62876.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	3.23	3.52	9.13	4.83	14.73	17.25	13.29	20.22	10.42	1.0	3.52	5.01
Merged-chr1-136578437-3	chr1	136578347	136578547	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46454.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	16.56	13.83	28.52	33.38	30.27	16.93	11.63	35.83	25.77	13.05	37.18	30.7
Merged-chr10-17669624-3	chr10	17669512	17669712	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53616.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	21.0	12.58	13.12	16.09	24.14	24.15	11.29	30.45	20.06	24.6	23.62	8.14
Merged-chr13-35647637-3	chr13	35647545	35647745	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12217.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	10.9	23.39	28.52	52.69	36.82	17.56	24.58	32.55	18.88	11.55	17.59	11.59
Merged-chr3-8736182-3	chr3	8736093	8736293	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	14.54	16.1	25.67	20.11	24.14	31.04	26.57	34.01	32.26	35.65	52.26	11.28
Merged-chr3-19954148-3	chr3	19954060	19954260	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2894.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	42.8	45.28	63.32	28.96	44.59	58.64	34.88	40.91	66.68	59.25	57.79	15.35
Merged-chr9-111554795-3	chr9	111554694	111554894	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	115713.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	24.63	27.67	27.38	31.37	10.64	17.87	17.94	18.84	51.93	32.64	56.78	25.69
Merged-chrX-102644691-3	chrX	102644596	102644796	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008832)	promoter-TSS (NM_008832)	-450.0	NM_173021	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	14.94	19.87	11.98	28.96	24.14	30.42	20.59	13.26	26.36	29.62	27.64	25.37
Merged-chr8-120792911-3	chr8	120792848	120793048	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54309.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	24.63	19.12	19.4	13.67	19.64	21.95	18.27	27.79	11.6	10.04	15.07	13.47
Merged-chr11-72752215-3	chr11	72752116	72752316	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009671, exon 15 of 25)	exon (NM_009671, exon 15 of 25)	43623.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	26.25	10.56	15.97	30.97	15.14	13.48	22.59	31.29	20.85	16.57	31.15	30.07
Merged-chr2-166294358-3	chr2	166294271	166294471	+	967.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	20463.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	16.96	18.11	17.68	13.27	13.91	16.93	4.32	9.28	17.11	9.04	22.11	5.33
Merged-chr17-35201244-3	chr17	35201143	35201343	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013693, intron 1 of 3)	intron (NM_013693, intron 1 of 3)	764.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	13.73	25.4	16.54	7.24	17.59	31.36	16.28	10.43	25.57	38.66	24.62	7.83
Merged-chr6-33256893-1	chr6	33256793	33256993	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347089, intron 1 of 9)	intron (NM_001347089, intron 1 of 9)	7765.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.23	0.75	2.85	6.44	6.55	3.14	6.64	7.82	2.75	3.01	7.03	2.82
Merged-chr7-19578190-3	chr7	19578100	19578300	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	913.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	18.17	19.62	17.68	12.47	23.73	15.68	14.28	27.48	22.82	21.59	23.62	11.59
Merged-chr1-131979250-1	chr1	131979150	131979350	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	8641.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.65	0.5	0.0	1.21	8.59	1.25	2.99	8.72	2.75	1.51	7.03	2.82
Merged-chr7-49396630-1	chr7	49396530	49396730	+	967.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 3 of 37)	B2_Mm2|SINE|B2	150441.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	8.88	6.79	2.28	8.04	29.86	13.48	25.24	12.03	11.41	16.07	18.09	14.1
Merged-chr4-133887444-1	chr4	133887344	133887544	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 1 of 21)	intron (NM_009097, intron 1 of 21)	353.0	NM_001285505	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	9.69	15.34	6.28	8.85	11.05	9.72	13.95	8.92	8.06	8.54	10.05	5.95
Merged-chr13-12302443-3	chr13	12302359	12302559	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033268, intron 6 of 20)	intron (NM_033268, intron 6 of 20)	38273.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	16.96	13.08	11.98	15.28	24.55	19.44	13.62	16.88	22.62	26.61	22.11	16.6
Merged-chr5-41449656-3	chr5	41449572	41449772	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	258019.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	27.86	28.93	43.93	43.04	4.09	5.96	9.97	23.83	45.43	46.7	80.9	44.8
Merged-chr4-56222655-3	chr4	56222570	56222770	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	518755.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	22.21	26.66	35.37	24.53	38.05	23.2	6.31	19.15	22.42	26.11	36.18	25.37
Merged-chr2-94389186-3	chr2	94389080	94389280	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	17509.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	19.38	19.12	11.98	26.14	24.14	22.89	23.58	24.98	23.41	15.57	34.67	21.3
Merged-chr4-62583384-3	chr4	62583228	62583428	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	23481.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	8.48	8.55	10.27	2.82	6.55	9.41	8.64	10.46	5.51	6.03	14.07	3.13
Merged-chr1-13336513-1	chr1	13336413	13336613	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	35916.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.42	4.53	3.42	3.22	0.41	4.39	9.3	6.73	2.75	3.51	9.55	6.58
Merged-chr4-139579176-3	chr4	139579078	139579278	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4458.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	39.17	44.02	37.08	45.85	8.18	13.17	2.99	6.62	47.21	41.67	31.15	25.37
Merged-chr14-103513240-3	chr14	103513129	103513329	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022886)	promoter-TSS (NM_022886)	-112.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	12.52	9.56	26.81	20.11	40.91	23.83	33.55	58.79	15.34	18.58	34.17	13.16
Merged-chr7-102514129-1	chr7	102514029	102514229	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19356.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	1.21	1.01	1.71	0.0	0.82	2.51	1.99	3.34	1.97	0.5	0.5	3.45
Merged-chr6-29198779-3	chr6	29198692	29198892	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13505.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	23.82	14.59	11.98	18.1	17.59	24.77	12.95	20.07	30.88	19.58	39.7	15.98
Merged-chr10-10553103-3	chr10	10553021	10553221	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	5086.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	18.57	9.56	22.25	17.29	19.23	22.89	18.6	48.62	21.05	4.52	19.09	20.05
Merged-chr8-37791780-1	chr8	37791680	37791880	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	Lx6|LINE|L1	460422.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	1.21	4.02	1.71	2.41	4.91	4.7	5.65	8.58	0.0	0.5	0.0	0.31
Merged-chr5-99516401-1	chr5	99516301	99516501	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	MTD|LTR|ERVL-MaLR	212659.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	1.62	3.02	3.42	5.63	15.55	5.64	2.99	7.68	3.54	5.02	3.52	4.07
Merged-chr9-14752154-4	chr9	14752066	14752266	+	966.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010242)	promoter-TSS (NM_010242)	-44.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	16.15	11.82	14.26	28.56	26.18	11.6	20.26	25.93	16.33	12.05	21.1	30.39
Merged-chr7-44378509-3	chr7	44378404	44378604	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3474.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	21.0	9.56	30.23	25.34	22.91	12.54	22.59	35.97	16.33	24.6	26.63	17.86
Merged-chr16-91743195-3	chr16	91743082	91743282	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13811.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	29.88	12.07	21.68	16.89	21.68	18.81	9.63	15.64	16.92	6.53	23.11	5.33
Merged-chr10-128565388-3	chr10	128565322	128565522	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011119, intron 1 of 11)	CpG	512.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	17.36	10.31	22.82	13.67	14.32	21.32	28.23	14.89	20.06	14.56	12.06	16.29
Merged-chr2-24306825-3	chr2	24306723	24306923	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15627.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	11.31	15.09	18.25	28.56	17.59	23.83	20.59	49.79	31.08	29.12	42.21	34.77
Merged-chr4-86396870-2	chr4	86396778	86396978	+	966.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	161425.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.63	5.28	7.42	5.63	29.05	15.37	24.91	18.87	9.83	31.63	24.12	5.01
Merged-chr2-152881075-3	chr2	152880972	152881172	+	966.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001141976, exon 9 of 18)	exon (NM_001141976, exon 9 of 18)	16005.0	NR_049195	100885834.0		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	32.71	17.86	43.35	24.94	22.5	21.01	8.97	21.36	20.26	25.11	22.11	21.62
Merged-chr15-57761438-3	chr15	57761335	57761535	+	966.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	66768.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	20.19	24.4	27.38	40.62	10.23	16.62	20.93	32.5	26.75	30.13	68.84	28.51
Merged-chr6-112728870-3	chr6	112728776	112728976	+	966.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32206.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	20.19	8.55	20.54	23.73	32.73	27.91	13.95	18.7	22.62	16.07	29.14	15.66
Merged-chr3-148918010-3	chr3	148917908	148918108	+	966.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	36627.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	10.5	15.09	35.94	22.52	20.05	26.97	30.23	37.85	30.68	19.58	39.19	27.88
Merged-chr9-113725787-3	chr9	113725682	113725882	+	966.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15691.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	13.33	12.58	14.83	17.29	15.14	20.7	22.26	18.34	18.49	11.55	22.61	15.66
Merged-chr14-62760122-5	chr14	62759978	62760178	+	966.847595	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045503)	promoter-TSS (NR_045503)	-423.0	NR_045503	71000.0	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	5.65	16.1	19.97	6.84	11.45	15.37	6.98	8.52	9.24	19.58	11.05	9.08
Merged-chr11-3179064-2	chr11	3178933	3179133	+	966.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	14430.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.65	8.05	20.54	6.44	12.68	3.14	9.97	12.11	1.38	1.0	1.51	2.51
Merged-chr10-24641606-2	chr10	24641513	24641713	+	966.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	46171.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.25	2.26	6.28	4.42	13.09	12.23	16.61	15.76	17.51	10.54	17.08	10.65
Merged-chr2-60124836-3	chr2	60124741	60124941	+	966.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	899.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	15.34	18.11	16.54	6.44	10.23	28.85	18.93	19.46	36.58	41.17	27.64	29.76
Merged-chr15-83128199-3	chr15	83128111	83128311	+	966.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-5410.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	19.38	20.88	19.4	16.89	11.86	21.95	7.31	19.91	49.37	27.11	36.18	25.69
Merged-chr7-127713242-3	chr7	127713119	127713319	+	966.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301283, intron 1 of 2)	intron (NM_001301283, intron 1 of 2)	282.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	52.49	47.04	22.25	21.32	28.64	63.97	20.59	17.16	45.24	46.7	33.67	12.22
Merged-chr17-13544196-3	chr17	13544086	13544286	+	966.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045436, intron 2 of 4)	RLTR11B|LTR|ERVK	9908.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	17.77	11.57	13.12	13.27	11.86	12.23	15.28	24.06	14.16	22.59	26.13	20.05
Merged-chr7-98711711-3	chr7	98711626	98711826	+	966.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8479.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	14.13	16.85	10.27	14.08	14.73	15.99	15.61	16.01	14.16	5.52	14.57	11.28
Merged-chr10-119040005-3	chr10	119039888	119040088	+	966.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10511.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	21.4	8.3	23.96	29.76	21.27	18.5	25.58	25.09	22.03	18.08	32.16	15.04
Merged-chr10-21636866-3	chr10	21636772	21636972	+	966.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43727.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	22.21	8.3	14.26	21.72	29.05	31.36	34.88	40.51	33.83	36.65	41.2	25.69
Merged-chr17-29079035-3	chr17	29078913	29079113	+	966.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_036469, exon 1 of 2)	non-coding (NR_036469, exon 1 of 2)	113.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	20.59	16.35	22.25	15.28	18.41	29.48	14.62	16.4	21.83	16.07	14.07	12.53
Merged-chr5-90882364-3	chr5	90882263	90882463	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8882.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	16.56	11.07	14.83	24.53	26.59	19.13	28.9	37.82	16.33	14.56	10.05	6.27
Merged-chr7-80115054-6	chr7	80114918	80115118	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	CpG	332.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	11.71	12.83	9.7	12.07	15.55	7.53	8.97	8.5	16.13	12.05	12.56	19.11
Merged-chr1-179847937-3	chr1	179847839	179848039	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43924.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	18.98	11.57	18.25	17.29	15.96	20.38	15.94	20.07	19.67	18.58	38.19	15.04
Merged-chr15-95887572-3	chr15	95887468	95887668	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-57496.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	15.34	12.83	22.82	14.88	25.77	37.0	25.58	27.36	18.49	28.12	36.68	16.6
Merged-chr5-142932511-3	chr5	142932440	142932640	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25786.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	14.94	11.57	17.68	16.09	7.77	20.7	7.31	20.47	33.44	28.12	30.15	18.17
Merged-chr9-44582634-3	chr9	44582525	44582725	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22267.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	22.61	13.33	7.99	18.1	35.59	39.82	7.64	29.33	51.14	54.23	57.28	39.16
Merged-chr2-59465897-3	chr2	59465824	59466024	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18729.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	8.88	13.33	13.12	7.24	20.86	39.82	22.59	17.13	22.62	33.64	9.55	4.7
Merged-chr12-55487503-7	chr12	55487432	55487632	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5115.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	19.38	26.41	16.54	12.07	21.27	13.8	25.24	19.51	32.45	25.11	17.59	15.98
Merged-chr10-85002230-1	chr10	85002130	85002330	+	966.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	84617.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	6.86	2.26	7.99	3.22	10.64	3.14	14.95	11.78	3.93	2.51	7.03	5.01
Merged-chr7-88231337-3	chr7	88231248	88231448	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46737.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	21.4	14.59	22.25	15.28	18.41	18.19	21.26	18.87	30.49	22.59	20.1	9.08
Merged-chr8-84070374-3	chr8	84070269	84070469	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3533.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	17.36	12.07	12.55	18.9	11.86	21.32	19.6	13.18	17.51	17.07	21.61	14.1
Merged-chr15-44617103-3	chr15	44616993	44617193	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2134.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	19.79	7.29	23.39	22.12	22.09	20.07	25.91	20.66	20.46	14.56	36.68	17.86
Merged-chr11-75150861-2	chr11	75150755	75150955	+	966.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	B4A|SINE|B4	17297.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.46	5.03	7.99	4.42	4.5	15.37	4.98	10.21	13.77	14.56	22.11	7.52
Merged-chr11-113430311-2	chr11	113430218	113430418	+	966.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	135497.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	8.48	2.77	26.24	8.04	42.14	44.53	29.23	52.15	16.72	11.55	29.14	10.02
Merged-chrX-60021818-2	chrX	60021715	60021915	+	966.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305797, intron 5 of 6)	intron (NM_001305797, intron 5 of 6)	22351.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	5.65	4.53	8.56	8.85	9.41	12.86	15.61	18.17	26.55	8.54	28.64	6.89
Merged-chr9-30480646-3	chr9	30480543	30480743	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	17.36	19.87	9.13	24.13	22.91	21.95	8.3	34.15	21.24	24.6	43.72	19.74
Merged-chr9-66069803-3	chr9	66069707	66069907	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025612)	promoter-TSS (NM_001025612)	-76.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	29.88	22.13	27.95	32.98	43.77	35.43	11.29	17.3	31.08	49.71	46.73	24.12
Merged-chr6-97856391-3	chr6	97856287	97856487	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	49329.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	26.65	7.8	21.11	24.94	23.73	43.59	23.92	33.0	16.72	23.1	25.63	14.1
Merged-chr10-41303845-3	chr10	41303741	41303941	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-600.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	13.73	17.86	13.69	17.7	9.82	14.42	15.61	10.23	18.29	16.57	25.63	14.1
Merged-chr13-67780157-3	chr13	67780048	67780248	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028402, intron 1 of 3)	intron (NM_028402, intron 1 of 3)	455.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	15.75	20.37	13.69	13.67	16.77	37.32	12.95	18.5	53.3	50.71	55.78	33.83
Merged-chr15-98683949-3	chr15	98683838	98684038	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6477.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	19.38	16.85	9.7	12.07	26.18	21.64	9.97	16.6	31.67	37.16	40.2	22.87
Merged-chr2-30359257-3	chr2	30359167	30359367	+	966.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289710)	promoter-TSS (NM_001289710)	49.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	21.4	23.9	9.7	16.09	25.36	25.71	18.93	15.17	20.65	14.06	34.67	12.22
Merged-chr11-69123633-3	chr11	69123559	69123759	+	966.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033041)	TTS (NM_033041)	-2718.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	19.38	19.37	9.13	19.31	9.82	15.68	4.65	7.21	19.28	24.1	14.07	20.68
Merged-chr8-86745624-3	chr8	86745517	86745717	+	966.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027829)	promoter-TSS (NR_027829)	-82.0	NR_027829	666945.0	Mm.391806	NR_027829		Gm10638	-	predicted gene 10638	ncRNA	8.08	20.63	15.97	20.11	22.5	13.17	14.28	19.12	16.33	13.05	14.07	18.17
Merged-chr1-157101298-3	chr1	157101198	157101398	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305061, intron 5 of 8)	intron (NM_001305061, intron 5 of 8)	7352.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	23.02	18.11	22.25	32.58	6.95	9.72	7.97	13.63	29.7	24.6	60.3	21.62
Merged-chr6-136716282-3	chr6	136716191	136716391	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-54398.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	18.57	10.06	15.4	16.49	18.0	19.76	8.97	19.26	53.11	23.6	36.68	38.85
Merged-chr16-55555363-3	chr16	55555261	55555461	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60630.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	16.96	16.35	12.55	12.07	34.36	49.23	15.28	37.63	46.22	53.22	69.85	14.1
Merged-chr11-87421994-3	chr11	87421897	87422097	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	RMER15|LTR|ERVL	-5594.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	16.56	14.84	15.4	11.66	15.55	17.56	4.65	14.83	25.96	24.6	31.15	15.98
Merged-chr8-111338705-3	chr8	111338607	111338807	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029005)	promoter-TSS (NM_029005)	-502.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	28.27	19.12	23.39	14.08	21.27	38.26	18.93	20.3	24.19	27.11	32.16	10.34
Merged-chr11-19493438-5	chr11	19493326	19493526	+	966.5533449999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	428151.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	13.73	7.55	7.99	6.44	7.77	1.88	12.29	10.54	13.57	14.56	12.06	10.96
Merged-chr8-111538361-3	chr8	111538267	111538467	+	966.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168623)	promoter-TSS (NM_001168623)	24.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	17.36	15.34	14.26	14.88	17.59	35.12	9.63	11.89	36.39	31.63	34.67	13.16
Merged-chr11-121748122-3	chr11	121748003	121748203	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45676.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	19.79	12.58	32.52	12.47	57.68	70.24	27.9	26.16	27.93	66.78	28.64	11.28
Merged-chr2-170155653-3	chr2	170155538	170155738	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12963.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.9	12.83	23.96	12.07	15.14	21.64	6.31	9.59	26.95	24.1	22.11	14.41
Merged-chr5-106574691-3	chr5	106574553	106574753	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-116487.0	NM_001005477	104382.0	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH like homeobox 2	protein-coding	12.92	21.63	6.85	13.27	13.09	12.86	15.94	11.41	15.54	6.53	15.58	10.65
Merged-chr5-146772169-3	chr5	146772076	146772276	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	22780.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	12.92	14.34	7.99	22.93	12.27	17.56	10.96	17.58	19.87	21.09	19.09	9.4
Merged-chr16-24879319-3	chr16	24879232	24879432	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	157477.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	16.56	8.8	18.25	39.01	30.68	33.87	25.58	51.36	40.71	43.18	33.67	26.63
Merged-chr1-92034482-2	chr1	92034390	92034590	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	145851.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	31.5	27.67	49.06	76.82	0.82	1.57	2.33	1.43	29.9	17.07	47.23	30.07
Merged-chr5-135466078-3	chr5	135465982	135466182	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-71536.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	29.48	16.35	32.52	27.35	25.36	17.56	26.24	44.66	16.72	14.56	12.06	17.54
Merged-chr1-120019655-3	chr1	120019533	120019733	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 1 of 13)	intron (NM_001012322, intron 1 of 13)	12653.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	17.77	15.34	23.39	24.53	14.73	9.41	12.62	16.35	29.9	14.06	25.63	18.17
Merged-chr8-120768780-3	chr8	120768701	120768901	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30162.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	10.09	14.34	24.53	24.53	11.05	19.76	14.62	15.06	21.64	13.05	16.08	9.4
Merged-chr11-22972807-4	chr11	22972577	22972777	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361661, exon 1 of 3)	5' UTR (NM_001361661, exon 1 of 3)	189.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	10.09	7.29	3.42	8.85	4.91	10.03	8.64	7.15	13.77	6.53	11.56	14.41
Merged-chr5-19901870-3	chr5	19901770	19901970	+	966.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	MIRb|SINE|MIR	-5648.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	17.77	8.3	26.24	38.21	17.18	16.93	16.94	35.66	23.01	22.59	34.17	20.99
Merged-chr14-120762366-3	chr14	120762233	120762433	+	966.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148861.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	16.96	13.58	11.41	13.67	40.91	18.19	26.57	57.11	35.01	10.54	21.61	16.29
Merged-chrX-101268257-3	chrX	101268155	101268355	+	966.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013563)	promoter-TSS (NM_013563)	0.0	NM_001308535	16186.0	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	18.57	30.94	21.11	14.48	24.96	38.88	7.64	13.46	48.19	42.68	35.68	17.86
Merged-chr4-135307088-3	chr4	135306998	135307198	+	966.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34338.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	33.11	47.79	31.38	21.72	24.96	32.61	9.3	11.72	31.08	27.62	30.15	10.96
Merged-chr12-108642290-3	chr12	108642197	108642397	+	966.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	6544.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	11.71	9.81	12.55	8.45	14.73	19.76	13.62	12.17	22.62	22.59	25.63	12.53
Merged-chr16-20373007-3	chr16	20372897	20373097	+	966.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-47593.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	23.02	18.86	29.09	16.49	15.96	24.46	26.24	33.34	39.93	32.64	22.11	8.77
Merged-chr4-95416869-3	chr4	95416760	95416960	+	966.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140647.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	15.34	14.59	18.25	22.12	19.23	13.48	31.89	36.95	26.75	11.05	44.72	29.76
Merged-chr7-66304130-3	chr7	66304032	66304232	+	966.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 10 of 33)	intron (NM_146191, intron 10 of 33)	77592.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	10.09	11.82	9.7	14.88	21.27	24.77	21.92	18.7	24.98	14.56	31.15	20.68
Merged-chr15-67039650-3	chr15	67039567	67039767	+	966.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70026.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	15.34	20.88	24.53	21.72	26.18	34.18	37.87	30.17	13.96	16.57	19.6	15.04
Merged-chr12-114210523-2	chr12	114210424	114210624	+	966.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	258942.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	15.75	11.82	22.25	26.55	14.32	16.62	18.6	13.09	0.39	0.0	0.0	0.0
Merged-chr8-94703590-3	chr8	94703484	94703684	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7342.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	18.98	10.82	15.4	15.28	19.64	15.68	11.29	20.8	24.78	7.53	17.08	14.72
Merged-chr7-129995708-3	chr7	129995601	129995801	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	33536.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	18.57	14.84	21.68	17.29	13.09	19.76	16.61	23.13	26.95	14.06	32.66	16.92
Merged-chr18-70420490-3	chr18	70420405	70420605	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51949.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	8.88	12.32	18.25	16.89	19.64	14.74	16.61	14.78	28.52	18.58	29.14	12.84
Merged-chr11-100399538-3	chr11	100399435	100399635	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	1419.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	21.0	13.58	11.98	12.87	13.91	13.17	6.98	7.88	15.54	19.08	26.13	13.16
Merged-chr2-6715892-3	chr2	6715767	6715967	+	966.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	5795.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	17.77	7.55	18.25	17.7	12.68	5.64	18.27	28.82	17.11	6.53	25.63	12.22
Merged-chr6-115764262-5	chr6	115764117	115764317	+	966.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1751.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	6.06	10.31	2.85	10.86	9.82	7.53	7.97	9.08	15.54	13.05	13.57	9.4
Merged-chr17-34837680-3	chr17	34837616	34837816	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019442)	promoter-TSS (NM_019442)	697.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	15.75	15.34	3.42	2.41	11.86	13.8	1.99	8.38	22.62	14.06	16.58	15.04
Merged-chr4-141637666-1	chr4	141637566	141637766	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-13832.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	1.21	3.77	1.14	4.83	22.91	13.17	21.59	33.98	5.11	4.52	3.01	2.82
Merged-chr18-35063539-3	chr18	35063432	35063632	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-55380.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	17.36	13.33	22.82	15.28	6.14	11.29	8.64	17.16	7.67	7.03	23.62	16.29
Merged-chr1-52158912-3	chr1	52158787	52158987	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205313, intron 24 of 24)	intron (NM_001205313, intron 24 of 24)	39265.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	19.38	15.85	22.25	12.07	27.41	17.87	35.87	39.81	17.7	16.07	24.62	13.47
Merged-chr5-93094103-3	chr5	93093973	93094173	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	CpG	657.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	12.92	12.07	1.71	8.85	12.27	52.37	17.27	17.55	10.62	7.03	8.04	5.01
Merged-chr18-52270604-1	chr18	52270504	52270704	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-60932.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	2.02	1.01	0.0	0.0	18.0	11.6	17.94	23.05	0.39	1.51	13.06	3.45
Merged-chr19-43931057-1	chr19	43930957	43931157	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9141.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	7.67	5.03	11.41	5.23	13.5	10.66	17.94	9.56	2.56	10.04	4.52	4.7
Merged-chr3-65551335-3	chr3	65551227	65551427	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-21913.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	15.75	15.09	9.13	22.52	16.36	21.01	19.6	33.93	15.93	8.54	18.09	14.1
Merged-chr11-114897498-1	chr11	114897398	114897598	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170758, intron 3 of 6)	RSINE1|SINE|B4	7457.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.85	1.01	0.0	1.21	9.41	3.14	12.62	14.24	6.49	6.03	12.06	4.7
Merged-chr15-62181750-3	chr15	62181655	62181855	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	37696.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	15.75	14.34	18.83	18.9	14.32	15.37	19.93	19.04	14.75	11.55	19.6	3.76
Merged-chr17-87280116-3	chr17	87280021	87280221	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015506, intron 2 of 4)	MER110-int|LTR|ERV1	2693.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	22.21	18.61	19.4	15.69	23.32	20.7	16.94	28.07	16.72	25.11	15.58	11.9
Merged-chr19-4332915-3	chr19	4332825	4333025	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26703.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	33.52	18.86	21.68	15.69	34.77	36.06	11.29	13.68	33.44	33.14	31.66	10.34
Merged-chr16-32672412-1	chr16	32672312	32672512	+	966.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-742.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	3.63	6.79	9.13	4.42	9.82	16.93	3.65	2.21	22.62	12.05	17.59	4.7
Merged-chr16-21925498-3	chr16	21925406	21925606	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172821, intron 11 of 12)	intron (NM_172821, intron 11 of 12)	22046.0	NM_025693	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	12.11	14.59	16.54	15.69	19.64	17.56	10.3	22.49	28.13	23.1	24.62	15.35
Merged-chr5-122501527-4	chr5	122501480	122501680	+	966.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009722, exon 1 of 21)	exon (NM_009722, exon 1 of 21)	645.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	9.29	12.32	15.4	6.44	13.5	26.97	18.93	8.41	18.29	23.6	15.58	15.66
Merged-chr18-61536684-4	chr18	61536533	61536733	+	966.2958369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177828)	promoter-TSS (NM_177828)	-97.0	NM_177828	328967.0	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	21.0	8.3	7.99	10.05	13.09	10.66	12.29	8.5	13.57	12.55	17.08	10.34
Merged-chr5-139742857-3	chr5	139742742	139742942	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-6509.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.85	10.31	18.83	13.27	6.95	10.98	12.29	11.3	17.11	22.09	14.07	13.16
Merged-chr10-75834504-3	chr10	75834411	75834611	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010361, exon 1 of 5)	5' UTR (NM_010361, exon 1 of 5)	370.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	11.71	30.94	30.8	18.9	21.27	23.2	12.29	21.93	29.5	19.58	28.64	24.12
Merged-chrX-107149526-3	chrX	107149420	107149620	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122595)	promoter-TSS (NM_001122595)	66.0	NM_001122595	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	20.19	21.38	19.4	16.89	24.14	25.09	15.28	29.1	33.63	14.56	27.64	8.46
Merged-chr17-35274905-3	chr17	35274830	35275030	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11807.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	31.09	25.66	21.68	15.28	27.0	40.14	21.26	16.26	17.11	15.06	19.6	10.34
Merged-chr11-116020759-3	chr11	116020677	116020877	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	3727.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	19.79	13.83	13.12	15.69	15.55	28.54	4.98	4.23	28.72	19.58	30.15	13.47
Merged-chr14-70778217-3	chr14	70778075	70778275	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010071, exon 5 of 5)	3' UTR (NM_010071, exon 5 of 5)	3794.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	31.09	18.61	21.11	20.51	36.82	21.95	26.24	28.65	25.77	23.1	37.69	10.34
Merged-chr1-87622032-3	chr1	87621901	87622101	+	966.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1689.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	10.5	12.58	17.68	11.26	18.82	18.81	18.27	4.43	20.46	21.59	18.59	7.83
Merged-chr1-144242687-3	chr1	144242580	144242780	+	966.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6424.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	14.94	16.35	13.69	16.49	28.23	30.1	12.29	12.76	21.05	21.59	16.08	12.84
Merged-chr3-9002734-3	chr3	9002638	9002838	+	966.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1466.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.88	23.14	25.1	17.29	16.36	25.4	19.93	26.8	16.92	16.57	30.65	25.06
Merged-chr2-170155135-3	chr2	170155043	170155243	+	966.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12468.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	16.56	12.32	19.97	15.69	21.68	19.13	6.98	13.51	23.8	22.09	17.08	12.84
Merged-chr18-5819922-3	chr18	5819858	5820058	+	966.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227311.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	15.75	21.88	3.99	16.49	27.82	31.36	23.25	14.61	35.4	30.13	46.73	28.82
Merged-chr4-156204026-3	chr4	156203927	156204127	+	966.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030671, exon 1 of 1)	non-coding (NR_030671, exon 1 of 1)	743.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	8.48	13.33	10.27	13.67	15.55	19.76	12.29	17.92	28.72	16.57	23.11	15.98
Merged-chr13-33964614-3	chr13	33964458	33964658	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163241)	promoter-TSS (NM_001163241)	-101.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	22.61	19.37	20.54	27.35	9.0	21.01	9.63	17.97	12.0	23.6	13.06	9.4
Merged-chr12-25093480-4	chr12	25093361	25093561	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010496)	TTS (NM_010496)	2631.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.27	17.86	18.25	22.52	15.14	26.34	11.63	14.27	11.8	12.55	13.06	13.47
Merged-chr1-170255710-3	chr1	170255609	170255809	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151590)	promoter-TSS (NR_151590)	30.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	21.0	15.09	10.27	13.27	55.64	62.09	34.88	52.93	60.19	59.25	96.98	39.47
Merged-chr19-14677186-3	chr19	14677096	14677296	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-79013.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	13.73	17.61	23.39	15.69	20.86	25.09	35.87	14.24	23.8	20.08	37.69	6.89
Merged-chr12-33132071-3	chr12	33131928	33132128	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	15558.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	18.98	7.55	23.39	13.67	24.96	14.11	14.62	20.55	35.8	20.08	32.16	20.36
Merged-chr14-19986871-3	chr14	19986744	19986944	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9595.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	24.63	30.18	22.25	29.76	43.36	19.13	27.9	30.0	18.88	12.05	27.13	19.11
Merged-chr15-27596936-3	chr15	27596838	27597038	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25444.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	12.11	14.59	18.25	27.35	42.14	41.39	34.88	60.76	35.01	34.14	36.68	27.25
Merged-chr17-81433299-3	chr17	81433202	81433402	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305085.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	33.52	26.41	21.68	15.69	6.95	33.87	13.29	16.82	27.73	18.08	17.59	12.53
Merged-chr9-21181585-3	chr9	21181498	21181698	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	CpG	-2503.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	16.96	18.86	21.68	26.95	33.55	16.62	15.94	22.99	13.18	13.56	22.61	10.65
Merged-chr10-79940902-3	chr10	79940800	79941000	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	13559.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	25.44	20.88	26.81	36.2	21.68	33.87	25.24	33.14	12.78	12.05	24.12	20.68
Merged-chr4-116177170-3	chr4	116177072	116177272	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3800.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	22.61	22.64	3.42	7.24	26.59	58.32	33.22	16.18	23.21	22.59	22.61	11.28
Merged-chr16-36662864-3	chr16	36662755	36662955	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	3222.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	12.52	10.06	8.56	22.52	20.05	14.42	9.3	20.94	14.75	20.59	29.14	16.6
Merged-chr17-78373968-3	chr17	78373846	78374046	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44206.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	24.63	15.85	23.39	19.31	20.86	13.17	21.59	36.48	15.54	12.05	27.64	15.66
Merged-chr10-67115746-3	chr10	67115648	67115848	+	966.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11510.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	18.98	12.07	14.83	12.47	21.27	15.05	11.29	14.92	19.08	19.58	11.56	18.48
Merged-chr17-23706880-3	chr17	23706772	23706972	+	966.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19464.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	24.63	31.19	41.07	34.99	13.91	26.03	24.25	16.91	24.19	13.56	17.59	22.87
Merged-chr3-97628690-3	chr3	97628602	97628802	+	966.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161765)	promoter-TSS (NM_001161765)	-102.0	NM_010232	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	13.33	10.06	8.56	19.31	15.55	10.35	13.95	17.41	20.46	21.09	14.57	12.53
Merged-chr11-11685564-3	chr11	11685459	11685659	+	966.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-366.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	25.44	38.23	26.24	16.89	37.64	39.2	39.53	31.4	33.04	13.56	32.66	15.04
Merged-chr14-71334248-3	chr14	71334144	71334344	+	966.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	82971.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	24.63	18.11	33.09	24.13	11.05	20.7	11.29	18.81	27.14	36.65	36.68	15.66
Merged-chr8-120750792-3	chr8	120750684	120750884	+	966.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	12145.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	14.13	8.3	21.68	26.55	28.23	6.59	29.23	59.92	23.6	7.03	25.12	13.16
Merged-chr4-105291611-3	chr4	105291443	105291643	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134196.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	8.88	11.07	6.85	14.08	6.95	14.74	13.62	9.67	19.08	14.56	20.6	9.71
Merged-chr1-191955344-3	chr1	191955251	191955451	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22019.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	7.67	9.56	22.25	16.49	18.82	16.93	19.27	25.15	9.64	6.53	16.08	10.65
Merged-chr11-94075034-1	chr11	94074934	94075134	+	966.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025430, intron 5 of 25)	MTEb|LTR|ERVL-MaLR	30829.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	2.45	1.88	2.99	11.3	3.15	2.01	10.05	1.25
Merged-chr13-23431507-3	chr13	23431428	23431628	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	-511.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	35.53	17.36	12.55	18.1	28.64	34.81	20.93	20.52	25.18	28.62	20.6	23.81
Merged-chr3-61344707-3	chr3	61344604	61344804	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-19803.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	30.28	28.42	26.24	16.49	20.05	61.15	18.6	15.93	40.52	43.68	30.15	9.4
Merged-chr11-96411033-2	chr11	96410929	96411129	+	966.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45271.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	2.42	3.27	0.0	2.82	11.86	14.42	21.92	14.07	15.54	11.55	15.07	14.72
Merged-chr17-42937689-3	chr17	42937600	42937800	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61276.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	17.36	10.31	21.68	7.64	22.5	22.58	16.61	21.31	29.7	32.13	21.61	14.72
Merged-chr5-3421408-3	chr5	3421305	3421505	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	L1_Mus1|LINE|L1	77512.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	12.52	18.36	17.11	16.49	15.55	11.92	13.95	3.25	17.7	27.11	38.69	21.93
Merged-chr4-47347222-3	chr4	47347122	47347322	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6000.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	14.13	28.67	35.37	27.75	44.59	42.96	45.18	50.16	42.29	38.16	53.26	30.07
Merged-chr13-45002219-3	chr13	45002115	45002315	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025772)	promoter-TSS (NM_025772)	-119.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	9.69	9.81	5.7	12.47	22.5	26.65	12.62	18.59	21.83	22.09	25.63	15.98
Merged-chr15-59809166-1	chr15	59809066	59809266	+	966.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14207.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.27	7.04	14.26	13.27	8.18	7.53	5.98	6.79	11.01	5.52	16.58	12.84
Merged-chr17-37492162-3	chr17	37492061	37492261	+	965.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146328)	promoter-TSS (NM_146328)	-307.0	NM_146328	258325.0	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	7.67	12.32	20.54	24.94	22.09	17.25	24.91	24.9	24.19	16.57	24.12	12.53
Merged-chr10-8862144-3	chr10	8862045	8862245	+	965.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	23925.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	16.56	14.09	21.68	10.05	16.36	34.49	9.3	13.71	20.65	19.08	17.08	5.95
Merged-chr13-110896078-3	chr13	110895971	110896171	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131194, intron 2 of 2)	intron (NR_131194, intron 2 of 2)	-7428.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	16.96	12.07	16.54	24.53	23.32	8.15	24.58	29.13	28.91	14.56	24.62	20.05
Merged-chr1-105999191-3	chr1	105999085	105999285	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8779.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	11.31	19.62	13.69	24.13	15.96	24.77	10.63	31.01	23.41	17.07	23.11	12.53
Merged-chr16-33178551-3	chr16	33178419	33178619	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6552.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	20.19	9.81	20.54	12.87	18.0	20.7	13.62	18.42	18.88	17.57	19.09	12.53
Merged-chr5-114783854-3	chr5	114783748	114783948	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026718, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	8708.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	23.82	48.04	25.67	13.67	11.45	56.13	12.29	10.63	63.53	56.24	57.28	20.05
Merged-chr16-57504890-3	chr16	57504777	57504977	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-44365.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	24.23	18.86	30.8	21.32	34.77	31.98	29.9	37.74	23.41	24.1	16.08	14.41
Merged-chr10-24173400-3	chr10	24173282	24173482	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24065.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	14.94	11.07	15.4	14.08	15.96	14.74	17.61	14.47	20.46	12.55	26.63	4.39
Merged-chr15-73017823-3	chr15	73017731	73017931	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	37981.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	59.76	42.76	28.52	18.9	44.59	64.28	29.56	28.54	64.32	80.84	40.2	16.92
Merged-chr6-129237006-3	chr6	129236946	129237146	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	MTE2a|LTR|ERVL-MaLR	999.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	12.11	16.35	22.82	5.23	19.64	19.13	14.62	8.72	28.13	15.06	11.56	12.22
Merged-chr16-22683817-3	chr16	22683710	22683910	+	965.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26579.0	NM_001346673	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	15.75	17.36	29.09	30.57	19.64	36.69	25.58	22.18	22.23	22.59	22.61	8.14
Merged-chr10-15671875-3	chr10	15671764	15671964	+	965.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119913.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	19.38	10.56	14.83	18.5	13.09	17.25	18.6	22.37	23.6	20.59	27.13	15.04
Merged-chr10-116726230-2	chr10	116726125	116726325	+	965.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045345, intron 1 of 2)	intron (NR_045345, intron 1 of 2)	2952.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	2.02	6.54	7.99	2.82	5.32	11.92	3.32	7.88	21.64	16.07	25.12	16.29
Merged-chr13-37451684-3	chr13	37451586	37451786	+	965.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106341.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	18.98	8.55	21.68	36.6	23.73	31.98	16.61	28.82	21.64	6.53	21.61	15.98
Merged-chr2-152914647-3	chr2	152914521	152914721	+	965.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081044, intron 3 of 11)	intron (NM_001081044, intron 3 of 11)	3269.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	25.84	23.9	26.81	12.87	26.59	27.28	15.28	23.92	30.29	38.16	31.15	34.46
Merged-chr13-93230745-3	chr13	93230627	93230827	+	965.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38310.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	22.21	29.93	21.11	16.89	20.46	28.22	18.6	21.39	21.64	25.61	16.58	9.71
Merged-chr4-88395925-3	chr4	88395825	88396025	+	965.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 37 of 43)	intron (NM_001081184, intron 37 of 43)	43001.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	14.13	15.85	12.55	23.33	31.09	15.05	14.95	24.7	19.87	17.57	24.12	11.59
Merged-chr8-107291520-3	chr8	107291422	107291622	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-1948.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	24.23	48.04	33.09	10.05	56.05	102.85	46.5	32.13	48.98	59.75	48.74	17.54
Merged-chr2-14340587-3	chr2	14340511	14340711	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47787.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	40.38	30.94	50.77	71.99	45.82	47.35	37.2	64.15	11.6	16.57	27.13	18.8
Merged-chr4-117478300-2	chr4	117478194	117478394	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18758.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	18.57	12.83	15.4	14.88	9.82	13.8	11.63	13.09	9.44	7.53	4.02	2.19
Merged-chr11-60933706-3	chr11	60933618	60933818	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	1661.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	30.28	25.91	29.66	24.13	22.5	14.11	16.61	11.41	22.42	25.11	13.57	5.95
Merged-chr5-143526897-3	chr5	143526781	143526981	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	1112.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	27.05	12.58	24.53	20.51	13.91	29.48	14.62	23.27	19.67	20.08	25.63	7.52
Merged-chr6-135065506-3	chr6	135065392	135065592	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181444)	promoter-TSS (NM_181444)	-170.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	13.33	12.58	17.68	15.28	11.05	21.95	13.62	28.46	3.93	13.56	22.61	12.22
Merged-chr1-33768208-3	chr1	33768097	33768297	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-10447.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	8.08	15.59	21.68	17.29	9.82	14.11	11.29	17.33	18.29	17.07	39.7	20.36
Merged-chr15-101318311-3	chr15	101318201	101318401	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25089.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	19.79	11.57	15.4	16.49	26.59	36.37	21.59	23.16	29.7	30.13	24.62	25.06
Merged-chr11-4190801-3	chr11	4190693	4190893	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	3960.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	11.71	12.07	14.83	15.69	24.96	22.58	42.85	38.19	26.36	12.55	19.09	14.72
Merged-chr5-146764801-3	chr5	146764687	146764887	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 2 of 8)	MTC|LTR|ERVL-MaLR	30169.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	18.17	9.81	31.38	13.27	20.86	25.09	16.61	27.39	43.47	37.66	38.69	27.57
Merged-chr2-155533621-1	chr2	155533521	155533721	+	965.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	15578.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.0	0.0	0.0	2.82	15.55	29.16	14.95	7.77	0.39	0.5	0.0	0.0
Merged-chr6-31208424-3	chr6	31208326	31208526	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	10048.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	21.0	22.64	36.51	25.34	36.0	44.84	24.91	40.85	37.96	12.55	37.69	14.72
Merged-chr14-46761404-1	chr14	46761304	46761504	+	965.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360041, intron 1 of 7)	LTR79|LTR|ERVL	863.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	6.46	1.51	1.14	1.61	5.32	0.63	1.33	3.9	26.16	15.06	34.17	28.82
Merged-chr11-116490427-4	chr11	116490301	116490501	+	965.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026364)	promoter-TSS (NM_026364)	-55.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	11.31	14.84	7.42	18.1	19.64	36.37	15.61	19.88	18.69	36.15	27.64	18.48
Merged-chr10-88802438-3	chr10	88802337	88802537	+	965.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175158, intron 18 of 61)	MIR|SINE|MIR	24377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	16.15	14.34	10.27	15.28	22.09	15.05	6.98	15.7	22.62	19.08	29.65	10.96
Merged-chr2-167960469-3	chr2	167960397	167960597	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28170.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.88	7.29	8.56	16.89	18.0	17.25	13.95	19.43	15.74	10.54	10.05	4.39
Merged-chr6-50074289-3	chr6	50074186	50074386	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-35955.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	18.17	14.84	25.1	17.7	21.27	30.42	27.9	30.98	19.47	15.57	16.58	14.72
Merged-chr2-35196063-3	chr2	35195977	35196177	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	B1F1|SINE|Alu	5043.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	21.4	11.07	13.69	12.87	17.59	16.93	11.63	12.95	21.64	19.08	13.57	13.78
Merged-chr4-145267887-3	chr4	145267770	145267970	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21000.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	40.38	47.54	31.95	12.87	60.55	74.32	64.77	36.76	64.71	79.33	54.77	26.63
Merged-chr1-132335147-3	chr1	132335036	132335236	+	965.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19011.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	18.98	19.37	12.55	3.62	17.59	37.63	19.6	6.0	14.75	17.07	4.52	5.64
Merged-chr6-47455518-3	chr6	47455391	47455591	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355550, intron 1 of 21)	intron (NM_001355550, intron 1 of 21)	734.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	24.63	11.82	19.4	22.93	14.73	9.41	17.94	25.12	17.9	5.02	8.54	15.04
Merged-chr17-86978659-3	chr17	86978564	86978764	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	ORR1A4|LTR|ERVL-MaLR	15553.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	18.17	14.09	13.12	22.52	29.46	24.46	14.95	22.04	26.55	13.05	41.2	15.35
Merged-chr9-75630915-3	chr9	75630850	75631050	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027309, intron 1 of 2)	intron (NM_027309, intron 1 of 2)	5218.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	16.56	21.63	24.53	19.71	12.27	17.25	10.96	13.01	44.65	38.16	59.29	26.94
Merged-chr17-80391872-3	chr17	80391765	80391965	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18323.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	11.71	16.35	39.36	14.08	19.23	28.54	28.23	31.49	31.47	19.58	42.71	28.82
Merged-chr7-29783975-3	chr7	29783881	29784081	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360207)	promoter-TSS (NM_001360207)	13.0	NM_001360209	22693.0	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	23.42	21.13	23.96	19.71	23.32	22.89	19.93	33.53	15.14	13.56	20.1	18.17
Merged-chr7-27342802-1	chr7	27342702	27342902	+	965.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138676, intron 16 of 17)	intron (NM_138676, intron 16 of 17)	-5190.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	1.51	0.0	4.83	3.27	1.88	0.0	0.53	17.7	32.64	21.61	10.96
Merged-chr8-13673449-3	chr8	13673320	13673520	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	4167.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	14.94	13.08	9.13	14.88	12.68	12.86	10.3	18.53	12.98	7.53	20.1	11.28
Merged-chr6-70855709-3	chr6	70855595	70855795	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313918, intron 1 of 2)	L2|LINE|L2	11180.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	27.86	14.59	15.4	24.53	25.36	22.58	15.61	21.2	16.72	16.57	13.06	14.72
Merged-chr18-80469264-3	chr18	80469142	80469342	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026295, exon 1 of 13)	exon (NM_026295, exon 1 of 13)	425.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	12.11	15.34	10.27	12.07	20.05	19.44	17.61	12.34	24.0	16.57	21.61	16.92
Merged-chr8-79059502-3	chr8	79059392	79059592	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	31055.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	18.98	26.66	39.93	18.9	24.14	15.05	24.58	54.84	15.54	5.02	13.06	5.01
Merged-chr15-78983522-3	chr15	78983392	78983592	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	436.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	14.94	12.58	16.54	7.64	12.27	14.11	11.63	10.01	16.72	9.04	14.07	12.53
Merged-chr7-82811219-3	chr7	82811129	82811329	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55585.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	12.92	19.62	31.38	22.12	11.45	14.74	3.65	14.89	30.68	14.56	23.62	24.43
Merged-chr11-20915272-3	chr11	20915160	20915360	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84152.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	14.13	8.8	19.4	15.28	13.5	17.56	7.31	21.06	13.57	16.57	25.63	10.96
Merged-chr3-19216435-3	chr3	19216330	19216530	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	28135.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	16.15	29.43	33.66	13.27	33.96	39.2	26.24	64.93	61.17	74.31	71.35	26.0
Merged-chr2-4567806-3	chr2	4567711	4567911	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	8057.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	12.52	18.86	29.66	8.45	18.0	25.4	20.93	12.67	29.31	34.14	35.68	9.08
Merged-chr13-111536636-3	chr13	111536531	111536731	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151444, intron 1 of 1)	intron (NR_151444, intron 1 of 1)	13278.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	16.96	16.6	14.26	17.7	13.09	13.17	23.92	8.97	13.57	15.06	19.09	17.23
Merged-chr5-122901838-3	chr5	122901738	122901938	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-1488.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	19.38	10.82	18.25	15.69	15.55	19.13	9.63	20.55	13.37	8.54	15.07	13.16
Merged-chr5-111059596-3	chr5	111059496	111059696	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	55452.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	14.94	15.34	21.11	30.57	17.18	7.21	27.57	18.45	24.39	19.08	45.22	24.75
Merged-chr19-11808603-3	chr19	11808497	11808697	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	10806.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	16.15	22.39	19.97	29.36	22.5	24.77	11.29	21.34	23.41	14.56	20.6	13.16
Merged-chr16-49930358-3	chr16	49930260	49930460	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25470.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	15.34	13.08	11.98	12.87	14.73	26.03	17.61	21.73	26.75	23.6	24.62	21.93
Merged-chr12-52603278-5	chr12	52603182	52603382	+	965.613342	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-960.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	12.92	10.31	9.7	12.47	7.77	16.62	12.62	13.6	13.37	19.08	13.06	15.98
Merged-chr8-84974428-3	chr8	84974325	84974525	+	965.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011563, exon 6 of 6)	3' UTR (NM_011563, exon 6 of 6)	4323.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	22.61	10.06	6.85	17.7	12.68	22.58	6.31	16.49	24.19	23.6	23.11	17.23
Merged-chr7-7171298-3	chr7	7171200	7171400	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	-53.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	12.52	9.56	28.52	19.31	32.32	18.19	22.92	32.16	34.62	17.57	48.74	17.23
Merged-chr3-146177946-3	chr3	146177848	146178048	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 7 of 13)	intron (NM_001005846, intron 7 of 13)	27774.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	13.33	10.06	7.99	20.11	20.86	16.93	11.96	15.95	17.51	30.13	14.57	16.29
Merged-chr8-117282763-3	chr8	117282667	117282867	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25748.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	16.96	9.06	22.25	18.1	24.96	31.04	5.98	15.25	15.93	24.6	26.13	11.9
Merged-chr4-156067755-3	chr4	156067651	156067851	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7949.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	5.25	13.08	18.25	10.86	13.5	23.83	10.3	9.73	20.85	16.07	16.58	6.27
Merged-chr17-85488899-3	chr17	85488806	85489006	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	129490.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	10.5	5.28	19.97	21.72	64.23	42.65	81.38	94.18	24.0	17.07	34.67	22.87
Merged-chr18-17726542-2	chr18	17726456	17726656	+	965.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-145566.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	2.83	3.77	2.85	5.23	21.27	18.5	10.96	6.5	17.11	18.58	23.62	9.4
Merged-chr14-50830108-3	chr14	50829997	50830197	+	965.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 45 of 54)	G-rich|Low_complexity|Low_complexity	22181.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	17.36	12.58	9.13	14.88	22.5	14.11	18.27	29.36	43.47	38.16	51.25	26.63
Merged-chr3-96812617-3	chr3	96812531	96812731	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163497, intron 1 of 3)	MIRb|SINE|MIR	1890.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	21.8	15.85	49.06	22.52	24.14	21.64	10.63	27.39	18.88	18.08	16.08	22.56
Merged-chr7-98818736-3	chr7	98818641	98818841	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16371.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	14.13	15.85	24.53	13.67	16.77	18.19	13.95	18.39	23.6	25.61	16.58	18.8
Merged-chr19-46309123-3	chr19	46308925	46309125	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177369, exon 13 of 23)	exon (NM_001177369, exon 13 of 23)	3095.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	5.25	17.61	13.69	9.25	13.09	9.72	7.31	7.88	6.29	11.05	9.55	10.96
Merged-chr11-84916383-3	chr11	84916270	84916470	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005223)	promoter-TSS (NM_001005223)	-4.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	41.19	17.1	17.68	4.83	38.86	34.49	12.62	16.77	41.3	34.65	18.59	16.29
Merged-chr5-66137372-3	chr5	66137264	66137464	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	PB1D10|SINE|Alu	13614.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	12.92	12.07	10.84	18.5	19.64	14.42	17.61	30.45	24.39	29.62	18.59	15.98
Merged-chr15-53104186-3	chr15	53104089	53104289	+	965.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	241994.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	17.77	10.06	27.38	25.74	14.32	20.38	32.88	33.7	25.96	26.11	64.82	28.19
Merged-chr4-123200225-1	chr4	123200125	123200325	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1328.0	NM_001085502	230718.0	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	50.88	63.89	62.18	16.09	0.0	1.88	0.0	0.0	2.56	2.01	0.0	0.31
Merged-chr10-111986616-3	chr10	111986542	111986742	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028608, exon 4 of 6)	exon (NM_028608, exon 4 of 6)	10622.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	12.11	14.59	26.81	16.89	43.36	42.33	31.22	55.77	48.39	42.68	40.2	32.27
Merged-chr11-59229961-3	chr11	59229854	59230054	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1687.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	17.36	12.32	20.54	14.08	16.36	17.87	13.29	23.61	29.9	12.55	24.12	6.27
Merged-chr7-28866110-2	chr7	28866015	28866215	+	965.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008496, exon 4 of 4)	exon (NM_008496, exon 4 of 4)	1729.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	8.08	2.52	4.56	12.07	14.73	15.05	10.96	12.2	12.39	7.53	8.54	12.84
Merged-chr11-70489421-2	chr11	70489315	70489515	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15859.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	17.77	6.54	13.69	6.44	22.5	21.95	8.3	9.93	19.28	27.11	15.58	7.21
Merged-chr7-125552997-2	chr7	125552882	125553082	+	965.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	700.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.46	4.78	12.55	2.41	2.45	7.53	3.32	7.01	11.41	8.54	13.57	11.9
Merged-chrX-139571291-3	chrX	139571208	139571408	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254761, intron 1 of 6)	B4A|SINE|B4	7968.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	16.96	8.05	19.97	17.29	10.23	11.92	17.61	22.43	22.62	15.06	30.65	15.35
Merged-chr4-134534522-3	chr4	134534426	134534626	+	965.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029759, intron 1 of 6)	CpG	570.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	17.36	11.57	21.11	19.31	25.36	9.09	14.62	18.36	21.05	18.58	21.61	21.3
Merged-chr4-46630530-3	chr4	46630428	46630628	+	965.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198664, intron 3 of 12)	intron (NM_198664, intron 3 of 12)	19671.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	21.8	22.89	20.54	25.74	28.64	47.66	33.55	36.45	17.9	12.55	36.18	12.53
Merged-chr2-156065500-5	chr2	156065406	156065606	+	965.4619140000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139151, exon 1 of 12)	exon (NM_139151, exon 1 of 12)	293.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	9.29	12.32	9.13	16.89	13.09	16.31	15.28	14.07	10.42	8.54	11.05	10.34
Merged-chr1-170174378-3	chr1	170174291	170174491	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	573.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	9.69	18.36	18.83	11.26	10.64	21.01	12.29	12.67	21.64	15.57	23.11	27.88
Merged-chr5-120500264-3	chr5	120500176	120500376	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	3347.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	12.52	8.05	23.39	18.5	11.45	16.93	18.27	17.66	32.06	12.55	25.63	22.87
Merged-chr4-43058948-3	chr4	43058843	43059043	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310758)	promoter-TSS (NM_001310758)	-10.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	31.9	20.37	17.11	21.32	31.5	36.06	24.58	24.62	25.77	23.1	25.63	10.02
Merged-chr11-47032505-3	chr11	47032401	47032601	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	L2|LINE|L2	221702.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	20.19	12.32	22.25	17.29	11.86	10.98	11.29	16.99	18.29	10.54	21.61	11.59
Merged-chr13-58288035-3	chr13	58287933	58288133	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360894, exon 15 of 15)	exon (NM_001360894, exon 15 of 15)	-13845.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	13.73	19.12	14.83	16.49	12.68	21.64	8.64	14.24	14.55	17.57	28.14	16.92
Merged-chr1-191910786-3	chr1	191910681	191910881	+	965.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009579, exon 2 of 2)	3' UTR (NM_009579, exon 2 of 2)	-3254.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	13.73	20.63	45.64	50.27	22.5	14.74	24.25	55.93	24.59	7.03	25.63	22.24
Merged-chr2-27772061-3	chr2	27771977	27772177	+	965.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61494.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	28.67	24.9	14.83	3.22	12.68	32.61	14.28	12.67	29.31	31.63	23.62	9.08
Merged-chr3-84069515-2	chr3	84069418	84069618	+	965.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29357.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	14.54	22.64	17.68	11.26	17.18	20.38	11.63	9.34	19.47	7.53	8.54	5.33
Merged-chr16-31192027-3	chr16	31191915	31192115	+	965.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	9223.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	33.92	31.44	50.77	39.82	28.23	28.85	19.6	33.03	34.81	14.56	25.12	25.69
Merged-chr12-99979701-3	chr12	99979599	99979799	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	Lx7|LINE|L1	15200.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	17.77	13.08	39.93	38.21	41.32	34.18	29.23	58.21	34.03	17.57	76.38	35.71
Merged-chr17-71300553-3	chr17	71300475	71300675	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10436.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	26.65	17.36	25.1	13.67	28.23	19.44	10.63	35.92	24.98	18.58	31.15	18.8
Merged-chr1-191110066-3	chr1	191109967	191110167	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11653.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	17.36	14.84	20.54	13.27	31.09	18.81	7.64	19.07	25.77	22.59	25.63	33.83
Merged-chr9-110678198-3	chr9	110678113	110678313	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	RLTR28|LTR|ERVL	21710.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	18.98	15.34	22.25	23.73	23.73	23.52	9.3	21.0	27.73	13.05	37.69	17.54
Merged-chr4-154026023-3	chr4	154025890	154026090	+	965.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163722)	promoter-TSS (NM_001163722)	54.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	12.11	19.12	13.12	14.08	15.55	8.47	7.64	17.07	11.6	14.06	18.59	10.65
Merged-chr17-59179264-2	chr17	59179164	59179364	+	965.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEi|LINE|L1	-165942.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	2.83	5.03	6.85	4.02	15.96	23.52	20.93	16.35	17.7	26.61	18.09	20.05
Merged-chr2-52999648-3	chr2	52999528	52999728	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	141760.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	14.13	16.85	18.83	11.26	26.18	26.97	13.29	13.37	27.14	25.11	20.6	13.16
Merged-chr13-43482006-3	chr13	43481900	43482100	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1027.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	18.57	16.35	25.1	19.71	25.36	27.28	19.27	27.22	21.05	16.07	17.08	19.74
Merged-chr4-16168600-3	chr4	16168497	16168697	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4487.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	23.82	13.83	7.42	10.86	25.77	29.79	14.62	14.61	37.57	23.1	30.65	23.81
Merged-chr6-134791425-3	chr6	134791308	134791508	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-952.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	17.36	11.82	11.41	12.87	21.68	30.73	15.61	17.16	47.8	47.2	49.24	26.31
Merged-chr7-66839599-3	chr7	66839495	66839695	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033877)	promoter-TSS (NM_001033877)	-140.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	46.44	25.66	18.25	18.9	24.55	35.12	10.3	26.22	15.14	13.05	24.12	10.65
Merged-chr11-70655523-3	chr11	70655424	70655624	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-874.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	25.44	28.93	15.4	9.25	16.36	30.73	14.28	8.92	52.91	43.18	36.18	19.74
Merged-chrX-48127717-3	chrX	48127623	48127823	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289729, intron 14 of 20)	intron (NM_001289729, intron 14 of 20)	-18713.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	14.94	12.83	11.41	16.89	17.18	24.15	16.94	18.31	19.47	27.62	28.14	19.74
Merged-chr16-13796805-3	chr16	13796722	13796922	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039521, intron 10 of 17)	intron (NM_001039521, intron 10 of 17)	16123.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	8.48	16.85	21.11	19.71	15.55	14.42	10.63	18.42	17.51	11.55	20.6	15.98
Merged-chr4-19927202-3	chr4	19927102	19927302	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4636.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	16.15	9.31	16.54	16.89	36.82	32.93	24.25	32.19	35.99	19.08	53.26	27.25
Merged-chr6-39420272-4	chr6	39420120	39420320	+	965.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311109)	promoter-TSS (NM_001311109)	149.0	NM_018810	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	13.33	15.85	15.97	14.48	20.86	17.87	18.6	15.56	20.26	26.11	19.6	12.84
Merged-chr17-85574153-1	chr17	85574053	85574253	+	965.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44243.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	1.62	1.26	0.0	4.02	20.86	5.96	11.96	12.45	4.92	12.55	4.02	0.0
Merged-chr10-122642310-2	chr10	122642200	122642400	+	965.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6039.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	5.25	4.28	7.99	9.25	19.23	9.09	3.99	14.61	17.7	15.06	19.6	6.27
Merged-chr12-17711583-3	chr12	17711489	17711689	+	965.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	MTC|LTR|ERVL-MaLR	20780.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	33.92	22.89	56.48	26.14	30.27	60.83	29.9	45.25	20.26	17.07	38.19	11.28
Merged-chr4-56946849-3	chr4	56946816	56947016	+	965.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175518, exon 1 of 18)	exon (NM_175518, exon 1 of 18)	513.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	10.5	11.32	7.42	21.72	19.23	14.11	24.91	23.92	12.78	14.06	19.09	20.68
Merged-chr15-73320787-3	chr15	73320684	73320884	+	965.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358045, exon 8 of 34)	exon (NM_001358045, exon 8 of 34)	-65902.0	NR_029561	387169.0		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	10.9	11.07	36.51	26.14	16.36	23.83	22.26	38.89	34.42	11.55	42.21	19.11
Merged-chr11-32607503-3	chr11	32607381	32607581	+	965.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 12 of 18)	L1MD|LINE|L1	-35074.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	16.96	21.13	18.25	24.13	18.82	19.44	13.95	24.11	24.98	11.05	28.14	13.16
Merged-chr8-23028424-5	chr8	23028354	23028554	+	965.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6645.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	12.52	12.32	9.13	18.5	14.73	13.17	14.28	16.88	25.96	22.59	26.13	11.59
Merged-chr4-133651661-3	chr4	133651594	133651794	+	965.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-18265.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	29.48	31.19	40.5	21.32	29.86	45.78	27.9	34.01	16.72	13.05	31.66	10.02
Merged-chr4-62429863-3	chr4	62429762	62429962	+	965.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153504, intron 2 of 2)	intron (NM_153504, intron 2 of 2)	4864.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	18.98	18.36	23.96	16.89	16.77	25.71	16.28	24.59	18.29	14.06	24.12	9.4
Merged-chr18-62229945-3	chr18	62229850	62230050	+	965.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49850.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	25.04	21.63	5.7	15.28	16.77	25.71	13.95	9.31	14.55	14.06	13.06	14.1
Merged-chr11-117325722-3	chr11	117325636	117325836	+	965.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5979.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	18.57	17.36	29.66	25.34	24.14	15.37	9.3	18.0	31.27	15.57	31.66	11.9
Merged-chr2-68784900-3	chr2	68784786	68784986	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76555.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	11.71	15.85	15.4	13.27	16.77	16.93	12.29	21.17	21.44	18.58	48.74	19.11
Merged-chr7-81304301-3	chr7	81304200	81304400	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40934.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	25.84	10.82	19.4	24.94	19.23	14.42	15.94	45.53	27.73	22.09	41.71	20.68
Merged-chr4-120885384-3	chr4	120885264	120885464	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 4 of 7)	B4A|SINE|B4	30565.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	17.77	10.56	9.13	14.08	28.64	17.87	20.59	25.4	27.93	30.13	27.64	19.11
Merged-chr2-30594982-3	chr2	30594864	30595064	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030137)	promoter-TSS (NM_030137)	-80.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	18.98	11.32	25.1	16.49	21.27	12.23	12.95	16.77	11.01	20.59	22.11	19.11
Merged-chr16-44991138-3	chr16	44991054	44991254	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47476.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	15.75	18.11	28.52	24.53	29.86	21.95	31.22	34.07	19.47	30.63	14.57	7.83
Merged-chr13-20212880-3	chr13	20212775	20212975	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	MIRb|SINE|MIR	122368.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	28.67	14.34	26.24	22.12	29.46	20.38	11.63	25.43	25.96	28.62	33.16	24.75
Merged-chr11-74572902-3	chr11	74572801	74573001	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	17257.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	17.36	10.56	12.55	20.91	24.14	26.03	26.91	31.18	19.28	23.6	22.61	15.35
Merged-chr14-21194544-3	chr14	21194429	21194629	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 4 of 10)	MER76|LTR|ERVL	118377.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	16.15	18.86	16.54	21.72	33.55	19.13	25.91	48.48	21.64	15.06	35.68	6.58
Merged-chr10-44818799-3	chr10	44818696	44818896	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-248418.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	17.77	12.32	10.27	16.49	18.41	18.81	17.27	16.12	35.8	26.11	26.13	16.29
Merged-chr6-86790636-2	chr6	86790525	86790725	+	965.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2959.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	16.15	12.32	25.1	16.89	14.32	15.05	8.64	19.09	3.15	1.51	0.0	1.25
Merged-chr8-35123468-2	chr8	35123355	35123555	+	965.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157765.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.42	6.54	1.71	5.23	13.91	10.35	11.96	17.97	17.11	22.59	35.17	19.11
Merged-chr4-152152351-3	chr4	152152201	152152401	+	965.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207687)	promoter-TSS (NM_207687)	-94.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	23.42	15.34	7.99	27.35	22.09	14.74	36.87	22.51	13.37	15.06	13.06	16.92
Merged-chr19-46349001-3	chr19	46348917	46349117	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040418)	promoter-TSS (NR_040418)	-29.0	NR_040418	75579.0	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	18.57	15.59	27.95	21.72	12.68	13.8	18.93	25.71	14.36	13.56	13.06	17.54
Merged-chr7-102222431-3	chr7	102222321	102222521	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	-607.0	NR_111938	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	19.79	15.34	15.4	16.89	15.96	17.56	9.3	13.93	16.72	25.61	29.14	11.9
Merged-chr8-117305583-3	chr8	117305491	117305691	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-43579.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	16.15	17.1	18.83	11.66	20.46	30.42	17.61	24.5	31.47	26.61	34.67	16.92
Merged-chr10-20662550-3	chr10	20662433	20662633	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	RLTR28B|LTR|ERVL	62545.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	26.25	24.15	15.97	20.11	22.5	21.64	18.93	23.27	26.75	14.06	14.07	16.92
Merged-chrX-12858058-3	chrX	12857963	12858163	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78810.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	52.09	42.51	35.37	11.66	51.96	70.55	25.24	31.68	56.25	46.19	41.2	20.36
Merged-chr1-91249193-1	chr1	91249093	91249293	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-1111.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.23	1.26	0.0	4.02	12.68	16.62	5.31	9.95	0.39	2.01	2.51	1.25
Merged-chr16-17276323-3	chr16	17276236	17276436	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177473)	promoter-TSS (NM_177473)	36.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	28.27	21.38	17.68	26.14	29.05	32.61	21.92	27.62	30.88	13.05	39.19	18.48
Merged-chr6-76409589-3	chr6	76409487	76409687	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-832890.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	13.33	5.53	21.11	24.13	24.55	29.16	20.59	40.32	9.24	15.06	25.63	14.41
Merged-chr10-111132230-1	chr10	111132130	111132330	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-32572.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.23	2.52	11.98	4.02	3.27	5.96	6.98	9.59	4.72	4.52	3.01	2.51
Merged-chr1-178675597-1	chr1	178675497	178675697	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	146472.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	11.71	9.56	17.68	17.7	0.82	1.25	0.0	0.84	0.0	1.0	1.0	1.25
Merged-chr5-27794132-1	chr5	27794032	27794232	+	965.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-2582.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	2.42	3.27	3.42	0.8	1.23	4.08	5.31	1.85	16.52	14.56	18.09	16.29
Merged-chr2-84467578-1	chr2	84467478	84467678	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355271, intron 2 of 8)	MLT1B|LTR|ERVL-MaLR	6596.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.44	5.53	9.7	22.12	15.55	13.8	9.3	19.12	8.65	9.54	18.59	4.7
Merged-chr13-47362403-1	chr13	47362303	47362503	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	168400.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.21	2.26	2.85	5.63	4.09	3.76	7.31	6.93	6.1	3.51	3.52	2.19
Merged-chr9-53390398-1	chr9	53390298	53390498	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	6375.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	1.21	6.04	2.28	6.03	11.45	12.86	4.98	3.5	4.92	10.04	2.51	0.63
Merged-chr9-56958911-1	chr9	56958811	56959011	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178374, intron 2 of 8)	B4A|SINE|B4	7987.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	4.04	5.28	15.97	7.24	12.68	3.76	2.33	10.07	2.75	4.52	10.55	5.33
Merged-chr13-37854078-3	chr13	37853972	37854172	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	26679.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	23.02	13.08	10.27	10.46	28.23	36.69	13.62	23.66	21.05	13.56	18.59	11.28
Merged-chr11-45808041-1	chr11	45807941	45808141	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045876)	promoter-TSS (NR_045876)	-42.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	5.65	3.77	4.56	1.61	8.18	2.2	5.31	10.46	1.18	1.0	1.0	3.13
Merged-chr2-157201651-3	chr2	157201556	157201756	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 1 of 21)	intron (NM_011249, intron 1 of 21)	2878.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	17.36	12.07	10.84	12.47	15.55	12.54	12.29	12.11	15.34	18.58	22.61	13.47
Merged-chr1-91250857-1	chr1	91250757	91250957	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	291.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	10.09	10.82	17.11	5.63	11.05	15.37	5.65	9.14	17.9	17.07	21.1	17.86
Merged-chr5-145205336-3	chr5	145205228	145205428	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167944, exon 1 of 4)	exon (NM_001167944, exon 1 of 4)	769.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	12.92	16.85	20.54	18.5	11.45	20.38	8.64	13.32	20.65	20.08	16.08	11.59
Merged-chr15-77956772-3	chr15	77956659	77956859	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168260)	promoter-TSS (NM_001168260)	-37.0	NM_001017983	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	36.75	27.17	13.69	23.33	25.36	52.05	22.59	41.05	50.75	33.64	55.27	23.81
Merged-chr2-155367817-3	chr2	155367709	155367909	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-10385.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	39.57	28.93	58.76	41.43	9.41	17.25	8.64	10.23	46.42	61.26	93.96	46.36
Merged-chr15-81610482-3	chr15	81610383	81610583	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177821, exon 4 of 31)	exon (NM_177821, exon 4 of 31)	24269.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	12.52	14.59	18.83	21.72	21.68	18.5	2.33	21.5	12.59	8.03	29.14	13.78
Merged-chr2-73529891-1	chr2	73529791	73529991	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	-404.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	10.5	2.77	1.71	0.0	3.68	4.7	7.31	8.07	6.69	5.02	8.04	4.07
Merged-chr5-115532148-3	chr5	115532044	115532244	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	25468.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	36.75	17.86	41.64	21.72	18.0	32.3	17.61	23.8	20.26	14.06	44.22	12.84
Merged-chr11-116093884-3	chr11	116093769	116093969	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6874.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	49.67	22.39	17.68	28.96	17.59	40.76	8.3	19.74	34.42	36.15	39.7	20.36
Merged-chr19-44591296-3	chr19	44591206	44591406	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28452.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	21.4	21.38	21.68	28.96	18.41	15.37	21.59	29.44	23.6	15.57	13.06	14.72
Merged-chr17-80100080-3	chr17	80099965	80100165	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27406.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	14.54	8.55	15.97	19.71	34.77	36.06	31.22	41.86	28.91	35.15	22.61	20.05
Merged-chr5-64883672-3	chr5	64883591	64883791	+	964.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49008.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	13.73	18.86	21.68	12.07	18.41	27.91	11.96	10.43	38.75	30.13	15.07	21.3
Merged-chr2-73037889-2	chr2	73037775	73037975	+	964.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57429.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	8.88	3.77	1.14	3.22	13.91	13.8	16.61	20.41	12.98	5.02	16.08	15.98
Merged-chr11-46462180-3	chr11	46462098	46462298	+	964.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	7267.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	16.56	7.04	25.1	10.46	22.09	33.55	22.59	31.51	22.03	20.59	32.16	11.59
Merged-chr11-70562883-3	chr11	70562781	70562981	+	964.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	0.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	25.84	13.33	13.12	16.89	22.5	30.42	12.29	17.33	33.04	30.13	25.12	26.94
Merged-chr10-62486067-3	chr10	62485971	62486171	+	964.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	527.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	22.21	16.6	17.11	12.47	14.73	16.62	17.94	19.65	25.37	24.1	23.11	20.36
Merged-chr2-167700951-3	chr2	167700832	167701032	+	964.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9755.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.65	6.04	23.96	17.29	16.36	10.35	41.19	58.12	16.33	8.54	18.09	16.92
Merged-chr11-45884222-3	chr11	45884101	45884301	+	964.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045520, intron 2 of 11)	intron (NM_001045520, intron 2 of 11)	32237.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	20.19	19.62	13.69	24.13	27.41	30.73	18.6	22.96	33.83	26.61	25.12	18.48
Merged-chr10-117844381-3	chr10	117844268	117844468	+	964.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	1606.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	12.52	20.63	20.54	14.88	8.59	39.51	15.94	19.07	26.75	23.1	29.14	11.59
Merged-chr10-19570396-3	chr10	19570304	19570504	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21545.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	36.75	28.93	22.25	14.48	22.09	33.24	23.25	16.88	40.32	21.59	22.11	9.71
Merged-chr11-19965462-3	chr11	19965365	19965565	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41023.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	92.07	94.83	67.31	14.08	98.18	138.6	53.15	20.38	94.8	83.85	79.39	6.89
Merged-chr2-75734360-3	chr2	75734256	75734456	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29693.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	32.71	21.88	45.07	12.07	46.64	58.01	15.94	27.22	49.57	36.15	34.67	13.47
Merged-chr2-65391531-3	chr2	65391416	65391616	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27116.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	16.56	12.83	23.39	20.51	19.23	23.52	19.93	25.63	30.49	11.55	48.74	28.82
Merged-chr5-101998435-3	chr5	101998347	101998547	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	71474.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	27.46	29.93	38.79	11.26	28.64	31.67	22.92	32.94	37.17	33.14	47.23	19.42
Merged-chr4-133660214-3	chr4	133660095	133660295	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12452.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	16.56	15.34	17.68	30.97	24.14	28.22	14.95	11.19	11.8	14.06	5.53	8.14
Merged-chr6-34607991-2	chr6	34607885	34608085	+	964.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	9481.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	7.27	4.28	14.83	4.83	3.27	15.05	10.63	8.41	13.77	16.57	19.09	10.96
Merged-chr19-4042328-3	chr19	4042229	4042429	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181796)	promoter-TSS (NM_181796)	-108.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	20.59	20.37	7.99	30.16	55.23	56.13	50.49	39.81	34.81	41.67	32.66	34.46
Merged-chr11-62675912-3	chr11	62675805	62676005	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27241.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	21.0	14.34	13.69	22.93	25.77	20.7	17.27	19.57	26.36	25.11	28.14	19.11
Merged-chr11-3863926-3	chr11	3863814	3864014	+	964.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152818)	promoter-TSS (NM_152818)	-11.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	23.42	9.56	10.27	12.47	20.86	13.8	15.28	21.28	20.06	14.06	22.11	17.23
Merged-chr7-19217709-3	chr7	19217624	19217824	+	964.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175668, intron 1 of 1)	ID4_|SINE|ID	5186.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	18.17	13.33	29.66	24.53	18.82	21.01	27.24	25.46	18.29	11.05	24.12	21.62
Merged-chr14-101516747-3	chr14	101516650	101516850	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	RMER19B|LTR|ERVK	92441.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	26.65	14.09	11.41	22.12	29.05	17.56	16.28	26.92	23.8	6.53	30.65	13.16
Merged-chr2-93187492-3	chr2	93187390	93187590	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356535)	promoter-TSS (NM_001356535)	-58.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	30.28	22.89	13.69	30.97	10.23	15.37	8.64	8.02	25.18	21.09	39.7	12.22
Merged-chr4-128925177-3	chr4	128925064	128925264	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	37291.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	15.75	14.59	14.83	8.45	16.77	16.93	13.95	10.29	32.65	37.16	27.13	25.37
Merged-chr11-75106804-3	chr11	75106690	75106890	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	L2a|LINE|L2	-40799.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	17.36	10.56	13.69	11.26	21.27	21.01	17.61	18.62	19.47	20.59	32.16	14.72
Merged-chr4-156228010-3	chr4	156227911	156228111	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008233, intron 2 of 15)	intron (NM_001008233, intron 2 of 15)	531.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	15.34	14.34	18.83	22.93	12.68	11.92	9.97	12.36	25.96	13.05	23.62	16.92
Merged-chr7-129994945-3	chr7	129994846	129995046	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	32781.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	16.96	9.06	16.54	12.47	13.5	15.05	9.3	14.97	19.87	26.61	30.15	18.48
Merged-chr3-90072500-3	chr3	90072411	90072611	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293748)	promoter-TSS (NM_001293748)	-140.0	NM_001293748	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	14.94	15.85	14.26	20.51	11.45	21.95	19.6	25.77	20.26	17.57	27.64	20.36
Merged-chr9-96325742-3	chr9	96325635	96325835	+	964.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	37980.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.88	16.6	15.97	24.13	18.41	16.62	14.62	15.45	35.6	20.59	28.64	32.27
Merged-chr7-3704199-5	chr7	3704159	3704359	+	964.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029767, intron 1 of 4)	CpG	218.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	18.98	35.97	7.99	16.09	18.41	43.27	27.9	15.11	39.93	30.13	22.61	17.54
Merged-chr8-83244307-3	chr8	83244183	83244383	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 9 of 20)	intron (NM_001111304, intron 9 of 20)	-46065.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	29.07	7.8	21.11	39.42	33.55	23.83	24.25	37.23	47.4	35.15	56.28	22.24
Merged-chr18-82857059-3	chr18	82856960	82857160	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125720, intron 2 of 2)	MIRc|SINE|MIR	1163.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	16.96	15.59	10.27	2.41	22.5	38.26	10.63	9.36	42.29	32.13	22.61	11.28
Merged-chr19-34148668-3	chr19	34148586	34148786	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024204, intron 2 of 5)	intron (NM_024204, intron 2 of 5)	17355.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	14.54	7.8	21.68	20.91	18.82	22.58	22.92	26.52	19.87	9.04	19.6	13.47
Merged-chr14-31428345-3	chr14	31428235	31428435	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7765.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	12.92	9.81	17.11	32.18	35.18	22.26	39.86	56.97	25.57	20.59	45.22	27.57
Merged-chr8-10849705-3	chr8	10849652	10849852	+	964.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32702.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	16.96	18.61	27.95	20.91	16.77	25.09	31.89	35.38	19.87	14.06	8.54	18.8
Merged-chr9-46014498-3	chr9	46014392	46014592	+	964.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	1672.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	23.02	18.36	26.24	14.88	22.5	15.37	17.61	21.25	16.92	18.58	12.56	21.3
Merged-chr2-5804619-3	chr2	5804512	5804712	+	964.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356502, intron 8 of 11)	intron (NM_001356502, intron 8 of 11)	-40422.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	36.75	23.14	37.08	29.76	18.0	15.68	17.61	32.36	20.46	14.56	24.62	22.87
Merged-chr9-124021946-2	chr9	124021811	124022011	+	964.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009914)	promoter-TSS (NM_009914)	-60.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	12.52	5.28	13.12	14.48	14.73	15.37	13.95	11.07	6.1	4.02	2.51	1.88
Merged-chrX-157491364-3	chrX	157491350	157491550	+	964.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359185)	promoter-TSS (NM_001359185)	-82.0	NM_001359185	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	17.77	12.07	6.85	5.23	20.05	15.68	21.92	14.64	23.8	15.06	13.06	10.65
Merged-chr2-18971755-3	chr2	18971632	18971832	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	URR1B|DNA|hAT-Charlie	26389.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	11.31	12.32	11.98	11.26	16.36	11.92	15.94	15.08	16.92	27.62	22.11	27.88
Merged-chr17-70753706-3	chr17	70753596	70753796	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	(A)n|Simple_repeat|Simple_repeat	93081.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	18.98	9.81	26.24	21.72	31.5	20.07	17.94	18.7	22.82	20.08	18.09	9.08
Merged-chr7-121981711-3	chr7	121981646	121981846	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	-53.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	29.88	11.32	16.54	14.88	21.27	11.92	9.3	15.95	29.11	37.66	26.13	28.82
Merged-chr8-126585782-3	chr8	126585707	126585907	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7629.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	16.96	11.82	7.42	16.49	16.77	21.01	14.62	21.95	25.57	19.08	25.63	15.66
Merged-chr9-51030371-3	chr9	51030273	51030473	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21300.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	22.61	19.37	22.25	12.47	27.82	19.44	9.3	14.3	24.39	21.09	21.1	9.4
Merged-chr3-137991363-3	chr3	137991276	137991476	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9827.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	20.59	19.62	13.12	14.48	34.77	30.42	12.95	23.92	26.95	34.14	30.15	15.35
Merged-chr2-163758363-2	chr2	163758275	163758475	+	964.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8136.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	18.98	11.82	15.4	22.12	26.18	11.92	29.56	34.04	5.7	2.01	6.53	4.7
Merged-chr18-9486097-2	chr18	9485985	9486185	+	964.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35931.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.85	8.05	4.56	5.23	27.41	16.62	14.62	26.83	25.18	11.55	18.59	14.41
Merged-chr7-90042605-3	chr7	90042505	90042705	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	13446.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	23.42	17.36	21.11	6.44	42.14	34.81	21.26	40.07	27.14	30.63	30.15	19.74
Merged-chr13-28958004-3	chr13	28957914	28958114	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4315.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	11.71	10.06	5.7	11.26	22.91	16.31	22.92	16.4	7.87	7.53	22.61	16.92
Merged-chr1-128014125-3	chr1	128014010	128014210	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 8 of 20)	B4|SINE|B4	88361.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	19.38	6.29	41.64	20.51	38.05	20.38	38.2	55.4	22.03	18.58	54.77	30.7
Merged-chr8-111180161-3	chr8	111180042	111180242	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 10 of 25)	intron (NM_009149, intron 10 of 25)	-34644.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	12.11	8.05	15.97	15.28	38.46	14.74	44.84	41.89	25.18	21.09	35.17	25.06
Merged-chr8-84660180-3	chr8	84660091	84660291	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2661.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	48.46	39.74	28.52	25.34	34.77	58.01	37.54	21.64	35.4	31.13	14.07	15.35
Merged-chr18-34958550-3	chr18	34958462	34958662	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4211.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	14.13	7.8	7.42	8.04	19.64	18.81	9.63	15.95	31.86	36.15	21.61	14.41
Merged-chr10-88683597-3	chr10	88683493	88683693	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-570.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	14.13	17.61	11.98	18.1	9.82	18.5	17.27	22.07	23.8	25.11	25.12	14.72
Merged-chr15-73184077-3	chr15	73183971	73184171	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	876.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	10.5	13.58	17.11	16.89	22.09	11.6	11.29	15.9	24.98	27.11	37.69	14.1
Merged-chr17-34647594-3	chr17	34647516	34647716	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017406, intron 1 of 17)	CpG	470.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	9.69	16.35	14.83	4.02	10.64	15.37	8.97	10.04	15.93	17.57	11.56	14.72
Merged-chr5-99298161-3	chr5	99298065	99298265	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-45238.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	19.38	10.82	27.95	14.88	22.91	15.99	14.28	28.07	23.8	22.09	41.71	20.99
Merged-chr5-5380365-5	chr5	5380400	5380600	+	964.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011074)	promoter-TSS (NM_011074)	-249.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	15.34	20.88	13.12	33.78	28.23	14.11	27.24	24.14	18.49	22.59	19.09	17.23
Merged-chr17-28697515-3	chr17	28697426	28697626	+	964.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	4958.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	28.67	25.15	19.4	16.89	36.82	25.71	6.31	12.25	33.44	29.12	22.61	8.46
Merged-chr16-57455808-3	chr16	57455713	57455913	+	964.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-93429.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	21.0	25.91	33.09	14.88	37.64	47.66	36.54	22.26	50.94	49.21	51.25	26.31
Merged-chr7-89346244-3	chr7	89346126	89346326	+	964.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	MLT1J|LTR|ERVL-MaLR	-7439.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	18.17	17.61	21.11	26.55	12.27	18.81	10.3	25.04	14.55	24.6	22.61	5.95
Merged-chr4-148087524-3	chr4	148087440	148087640	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	524.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	25.84	29.43	29.09	10.86	61.37	68.99	53.15	28.49	49.17	73.81	47.23	19.11
Merged-chr6-43384559-2	chr6	43384462	43384662	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57867.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	15.75	13.33	14.83	15.69	10.23	14.42	14.95	34.23	6.69	2.51	9.55	11.59
Merged-chr2-45107746-2	chr2	45107682	45107882	+	964.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2495.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.27	3.77	8.56	1.21	11.05	9.09	10.3	8.86	13.96	17.57	17.08	5.64
Merged-chr11-94474420-3	chr11	94474312	94474512	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-214.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	19.79	13.08	11.41	14.48	14.73	24.46	16.61	22.4	22.82	20.08	34.67	18.8
Merged-chr6-140750701-3	chr6	140750571	140750771	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123786.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	10.9	8.3	12.55	10.46	19.23	13.8	26.91	24.11	20.26	20.59	13.06	19.11
Merged-chr2-58932391-3	chr2	58932280	58932480	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	177196.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	7.27	10.06	5.7	12.87	11.45	13.17	13.29	29.41	25.57	7.53	16.08	12.53
Merged-chr19-32903935-3	chr19	32903827	32904027	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146350.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	21.0	10.82	19.4	16.89	31.09	23.83	14.95	24.34	17.9	12.55	20.1	12.22
Merged-chr10-19548202-3	chr10	19548118	19548318	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-43731.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	14.54	8.3	24.53	18.9	23.32	21.64	19.27	20.61	23.6	14.56	18.09	13.47
Merged-chr5-137871800-3	chr5	137871706	137871906	+	964.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-48.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	24.63	20.63	35.94	10.86	30.68	32.93	20.26	14.64	16.92	23.1	21.61	13.16
Merged-chr13-37355786-3	chr13	37355691	37355891	+	964.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	19.79	26.66	13.69	31.37	25.36	18.81	17.27	27.48	29.31	26.61	25.63	15.35
Merged-chrX-100518783-3	chrX	100518691	100518891	+	964.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6047.0	NM_001114084	668257.0	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	9.69	19.62	21.68	18.5	20.46	25.09	16.28	20.83	22.23	22.59	14.57	7.21
Merged-chr12-108766590-3	chr12	108766496	108766696	+	964.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26715.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.08	12.32	15.97	13.27	21.27	13.48	15.28	16.04	12.19	13.05	27.13	15.98
Merged-chr5-64392701-3	chr5	64392623	64392823	+	964.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	75219.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	12.52	13.33	5.13	14.08	19.64	20.38	15.28	5.58	14.75	17.57	16.08	11.59
Merged-chr3-101924431-3	chr3	101924281	101924481	+	964.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039371)	promoter-TSS (NM_001039371)	72.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	11.31	17.36	10.27	22.93	22.91	16.31	15.61	19.4	14.16	12.05	20.6	8.46
Merged-chr8-60870984-3	chr8	60870884	60871084	+	964.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19409.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	14.13	15.09	9.13	19.71	18.82	22.58	17.61	30.0	16.33	22.59	45.22	15.98
Merged-chr11-34048782-3	chr11	34048691	34048891	+	964.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 1 of 20)	MIRb|SINE|MIR	1863.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	14.54	20.12	15.97	6.03	32.73	42.02	14.28	11.47	27.93	28.12	20.1	6.27
Merged-chr9-40628391-2	chr9	40628286	40628486	+	964.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57578.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	12.52	11.32	14.83	26.14	24.55	31.67	12.62	21.56	6.88	9.54	4.02	4.7
Merged-chr1-105926582-3	chr1	105926489	105926689	+	964.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	63693.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	13.33	16.6	18.25	15.28	24.96	21.32	25.58	35.22	28.32	15.06	23.11	13.16
Merged-chr4-37412968-3	chr4	37412863	37413063	+	964.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163560.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	19.79	13.33	14.26	30.57	30.27	22.26	23.92	30.48	19.87	10.54	22.61	10.34
Merged-chr10-59328026-3	chr10	59327917	59328117	+	964.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	4721.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	18.57	19.37	13.69	24.94	19.64	14.74	12.62	23.92	23.41	17.07	28.64	10.02
Merged-chr1-33719973-3	chr1	33719873	33720073	+	964.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008999)	promoter-TSS (NM_008999)	77.0	NM_008999	19335.0	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	14.13	9.81	7.42	16.49	26.59	23.52	16.94	17.36	13.37	16.57	24.12	18.17
Merged-chr5-118380694-5	chr5	118380599	118380799	+	964.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135472.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	8.48	10.31	14.26	8.85	11.45	14.11	12.62	13.04	14.95	20.08	12.06	9.71
Merged-chr11-58171719-3	chr11	58171640	58171840	+	964.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	86.0	NM_175001	216767.0	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	27.86	19.12	15.4	13.27	24.96	33.24	17.94	19.4	25.57	23.6	20.1	15.04
Merged-chr4-9643175-1	chr4	9643075	9643275	+	964.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	542.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	10.5	3.77	5.13	2.01	4.5	0.94	2.66	2.55	12.78	10.04	19.09	10.34
Merged-chrX-103551453-1	chrX	103551353	103551553	+	964.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5953.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	5.25	2.77	3.42	0.8	11.45	13.17	3.32	13.82	7.67	2.51	11.56	0.0
Merged-chr9-85369731-3	chr9	85369652	85369852	+	964.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42602.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	39.57	27.42	49.06	53.89	35.18	31.98	38.2	58.91	13.57	17.57	23.11	7.21
Merged-chr5-8798454-4	chr5	8798325	8798525	+	964.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152133)	promoter-TSS (NR_152133)	98.0	NR_152133	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	19.38	17.1	10.84	21.32	23.32	30.42	26.91	15.98	34.22	20.59	24.12	15.98
Merged-chr1-24613094-2	chr1	24612971	24613171	+	964.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25634.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	10514.43	7387.38	11151.86	9129.93	9316.92	11326.25	7859.16	10369.05	0.98	0.5	18.09	0.0
Merged-chr8-105565483-2	chr8	105565385	105565585	+	964.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	579.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	4.04	9.06	11.41	12.47	11.45	9.09	14.95	8.33	15.34	21.59	19.09	19.74
Merged-chr4-132796359-3	chr4	132796281	132796481	+	964.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-17.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	17.36	19.62	22.82	7.64	10.64	24.77	8.64	11.92	25.96	13.05	32.16	17.86
Merged-chr2-91132256-3	chr2	91132144	91132344	+	964.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008653, intron 22 of 31)	B3|SINE|B2	14100.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	20.19	13.08	16.54	6.84	15.96	23.2	11.96	9.28	17.11	23.6	11.05	6.27
Merged-chr2-120563834-3	chr2	120563735	120563935	+	964.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	24.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	28.67	24.4	23.96	10.46	22.91	29.16	8.3	15.7	31.86	26.61	32.66	25.37
Merged-chr6-48840444-3	chr6	48840366	48840566	+	964.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023056, exon 1 of 7)	5' UTR (NM_023056, exon 1 of 7)	522.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	6.86	14.34	6.85	9.25	8.59	3.45	9.63	7.49	5.9	7.53	10.55	6.27
Merged-chr18-65565820-1	chr18	65565720	65565920	+	964.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-14410.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.44	6.29	9.13	8.45	14.32	12.23	5.98	11.44	7.28	11.55	8.54	5.95
Merged-chr12-108629764-3	chr12	108629654	108629854	+	964.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	RLTR14|LTR|ERV1	-5999.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	12.92	14.09	18.83	3.22	25.77	43.59	21.59	21.48	30.49	40.67	43.72	10.34
Merged-chr7-47056491-2	chr7	47056395	47056595	+	964.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5855.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	4.44	6.79	10.27	7.24	36.82	21.32	14.62	30.08	20.26	11.05	20.6	15.66
Merged-chr15-38553660-2	chr15	38553550	38553750	+	964.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045757, intron 2 of 2)	ORR1A4|LTR|ERVL-MaLR	-34384.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	4.44	3.02	10.27	12.47	11.05	16.31	13.29	11.36	14.16	7.03	27.64	12.53
Merged-chr2-112266407-3	chr2	112266308	112266508	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	94.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	12.92	12.32	17.11	13.27	15.96	26.65	14.28	15.64	26.55	17.57	20.1	11.9
Merged-chr2-22826423-3	chr2	22826317	22826517	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	52090.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	30.28	17.61	25.1	24.94	11.86	17.25	32.55	29.1	19.28	16.57	14.57	15.35
Merged-chr1-166360380-3	chr1	166360276	166360476	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18791.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	17.36	10.31	25.67	13.27	19.23	12.54	14.62	26.8	25.77	16.57	34.67	11.28
Merged-chr1-74808311-3	chr1	74808209	74808409	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16290.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	18.98	16.85	30.23	20.91	26.59	25.09	8.64	22.15	21.83	26.11	45.22	10.65
Merged-chr11-105363063-3	chr11	105362946	105363146	+	964.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172568, intron 11 of 11)	CpG	70400.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	18.17	20.12	22.25	4.42	22.5	30.73	6.64	18.39	32.26	25.11	15.07	22.24
Merged-chr4-62470922-3	chr4	62470818	62471018	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290521)	promoter-TSS (NM_001290521)	-19.0	NM_001290521	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	21.4	15.85	15.97	6.84	17.18	31.36	14.28	13.79	32.26	17.57	33.16	16.92
Merged-chr1-193833484-3	chr1	193833387	193833587	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-325957.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	9.29	12.83	25.67	22.52	34.77	19.13	31.56	43.29	31.27	36.15	37.18	17.86
Merged-chr5-122131782-3	chr5	122131715	122131915	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3078.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	13.73	9.56	24.53	16.89	27.0	20.7	12.29	23.72	13.77	15.57	26.13	8.77
Merged-chr7-97164480-3	chr7	97164399	97164599	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	82748.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	16.96	11.32	29.66	26.95	24.96	11.92	12.62	27.39	14.16	13.56	22.61	14.41
Merged-chr15-81871942-3	chr15	81871840	81872040	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-48.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	26.65	21.88	15.4	9.25	26.59	28.85	9.3	17.75	46.81	35.65	28.14	17.86
Merged-chr2-70877891-3	chr2	70877806	70878006	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52426.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.06	11.07	15.97	19.31	20.46	24.15	23.25	34.85	17.51	29.12	44.22	19.74
Merged-chr8-88633620-3	chr8	88633518	88633718	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	2510.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	54.11	50.05	102.68	85.67	9.0	18.19	10.96	10.29	75.72	80.34	130.65	69.86
Merged-chr7-82838576-3	chr7	82838500	82838700	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	-28733.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	17.77	8.55	14.26	11.66	4.91	2.51	9.3	15.36	18.69	3.01	21.1	23.49
Merged-chr17-21536257-3	chr17	21536138	21536338	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-360.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	8.48	14.34	16.54	11.26	23.73	20.7	13.62	19.37	16.13	19.58	20.6	10.96
Merged-chr6-145866709-3	chr6	145866578	145866778	+	964.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1258.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	15.34	7.29	14.83	28.96	43.36	36.06	39.86	54.22	11.6	13.05	15.58	12.22
Merged-chr9-111070831-3	chr9	111070716	111070916	+	964.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13298.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	26.25	15.59	25.1	12.07	23.73	20.7	30.56	16.74	14.36	19.58	22.11	15.04
Merged-chr6-48445569-3	chr6	48445454	48445654	+	964.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	271.0	NM_020589	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	12.52	10.31	14.26	10.46	16.77	10.98	18.6	11.5	13.57	9.54	19.09	13.47
Merged-chr16-20085767-3	chr16	20085666	20085866	+	964.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11788.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	14.13	9.06	20.54	18.5	25.36	12.23	14.62	24.62	17.7	14.56	26.13	17.54
Merged-chr13-55432509-3	chr13	55432399	55432599	+	964.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-5695.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	13.33	7.04	13.12	12.47	21.27	17.56	9.97	11.52	21.24	22.09	25.63	10.65
Merged-chr5-123394012-3	chr5	123393910	123394110	+	964.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-788.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	17.77	10.31	13.69	16.89	9.41	22.89	8.64	11.24	28.52	21.59	9.04	6.27
Merged-chr2-132463604-3	chr2	132463504	132463704	+	964.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27124.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	11.31	12.32	22.25	20.51	25.77	18.19	26.24	21.45	19.47	21.59	32.16	18.17
Merged-chr3-51662842-3	chr3	51662750	51662950	+	964.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	1671.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	15.75	19.87	21.11	21.32	19.64	22.58	9.3	23.92	20.26	13.56	21.61	14.1
Merged-chr18-5345047-4	chr18	5344899	5345099	+	964.107178	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10192.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	6.86	7.55	4.56	11.66	13.91	14.42	9.3	11.5	12.39	12.55	9.04	9.4
Merged-chr1-43735494-2	chr1	43735394	43735594	+	964.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024283, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4892.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	5.65	3.02	5.13	8.04	12.68	12.86	10.63	9.79	11.21	6.53	19.6	8.46
Merged-chr7-142396757-3	chr7	142396647	142396847	+	964.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8877.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	22.61	34.96	24.53	11.66	18.41	29.16	25.24	16.32	34.42	34.14	24.62	24.75
Merged-chr19-11485471-3	chr19	11485377	11485577	+	964.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6561.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	42.4	22.13	21.11	15.69	31.09	22.58	15.28	16.43	21.64	34.14	14.07	9.08
Merged-chr7-97376106-3	chr7	97376008	97376208	+	964.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199035, intron 2 of 12)	intron (NM_199035, intron 2 of 12)	4491.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	18.57	12.58	8.56	11.66	15.55	19.44	13.95	20.44	24.59	13.05	23.62	18.48
Merged-chr2-52956117-3	chr2	52956012	52956212	+	964.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	98244.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	21.0	16.1	34.8	10.46	69.55	63.34	68.1	74.1	65.5	56.74	78.39	40.1
Merged-chr5-95924737-3	chr5	95924645	95924845	+	964.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32194.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	17.77	10.56	16.54	18.1	26.18	36.06	22.26	32.89	23.01	17.57	17.59	13.16
Merged-chr1-85896915-3	chr1	85896815	85897015	+	964.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	2405.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	10.5	17.1	20.54	20.51	13.5	14.11	10.96	14.66	31.47	17.07	28.14	13.78
Merged-chr9-31174822-1	chr9	31174722	31174922	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 3 of 17)	intron (NM_001357698, intron 3 of 17)	37026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.5	0.0	2.82	8.18	1.25	0.0	7.09	1.97	0.0	2.01	0.94
Merged-chr1-173632220-1	chr1	173632120	173632320	+	964.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175026, intron 1 of 6)	Lx2|LINE|L1	1361.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	15.34	9.31	6.28	2.41	0.0	0.0	0.0	0.0	1.97	3.01	0.0	4.07
Merged-chr8-13162314-3	chr8	13162224	13162424	+	964.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	3163.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	29.07	21.38	34.23	9.25	31.09	36.06	27.57	20.89	31.86	23.1	33.67	21.62
Merged-chr11-53494647-1	chr11	53494547	53494747	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14452.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	2.42	3.27	0.57	9.65	11.05	11.6	7.97	8.92	3.93	5.52	5.02	3.76
Merged-chr11-86596290-1	chr11	86596190	86596390	+	964.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-12132.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.4	2.77	0.0	1.21	2.45	5.02	3.99	0.81	19.67	30.63	12.06	9.71
Merged-chr1-74258832-1	chr1	74258732	74258932	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357387, intron 7 of 10)	U6|snRNA|snRNA	-19768.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	8.08	4.02	10.84	5.63	2.45	3.76	10.3	7.85	7.67	7.03	9.55	5.64
Merged-chr12-73445810-1	chr12	73445710	73445910	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger9b|DNA|TcMar-Tigger	-36247.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.63	3.77	2.28	0.8	4.5	3.45	9.97	8.27	1.97	6.53	10.05	5.64
Merged-chr8-34805257-3	chr8	34805141	34805341	+	963.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2369.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	9.29	13.08	10.27	16.49	15.96	10.03	13.62	9.67	13.77	15.06	15.07	9.71
Merged-chr2-12023586-3	chr2	12023486	12023686	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	245833.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	22.21	12.83	14.83	19.71	25.36	20.38	16.28	18.42	16.92	25.11	21.1	14.72
Merged-chr3-27579434-3	chr3	27579342	27579542	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	5553.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	12.92	10.06	17.11	20.51	15.96	22.58	2.99	15.17	23.8	14.56	27.64	14.1
Merged-chr11-98741801-3	chr11	98741703	98741903	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313983)	promoter-TSS (NM_001313983)	18.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	20.19	19.37	13.12	9.25	33.14	20.38	9.97	22.07	21.44	29.62	33.67	13.16
Merged-chr14-73474959-3	chr14	73474859	73475059	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35090.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	19.38	16.6	12.55	14.48	21.68	16.62	15.61	18.31	27.34	31.13	22.11	21.93
Merged-chr1-152548174-3	chr1	152548078	152548278	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	77039.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.06	10.56	10.84	17.7	11.45	17.25	12.95	18.0	5.7	8.03	15.58	10.96
Merged-chr3-69722729-3	chr3	69722632	69722832	+	963.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133787, intron 2 of 15)	CpG-9222	677.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	22.21	11.57	17.11	6.84	18.82	19.44	21.59	15.84	32.06	17.07	35.68	20.99
Merged-chr1-36357332-2	chr1	36357226	36357426	+	963.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172652, intron 5 of 20)	intron (NM_172652, intron 5 of 20)	-8568.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.0	1.01	0.0	0.0	12.68	17.25	11.63	22.49	14.36	8.03	21.61	9.08
Merged-chr6-50110776-2	chr6	50110676	50110876	+	963.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001361247)	promoter-TSS (NM_001361247)	-84.0	NM_001361247	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	14.13	13.08	15.4	17.29	13.5	18.81	30.23	22.68	7.47	9.54	9.55	10.34
Merged-chr2-91508615-3	chr2	91508508	91508708	+	963.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172668, exon 37 of 38)	exon (NM_172668, exon 37 of 38)	-18154.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	17.77	15.85	15.97	4.83	15.55	36.69	9.63	17.38	36.98	33.14	35.68	15.35
Merged-chr10-43752253-3	chr10	43752156	43752356	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	6098.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	12.52	17.86	42.78	30.16	20.46	21.32	25.91	32.16	23.6	30.13	30.65	16.6
Merged-chr11-63060119-3	chr11	63060022	63060222	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1537.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	15.75	17.61	10.84	16.09	28.23	44.21	30.23	26.83	44.45	26.11	28.64	18.17
Merged-chr13-35950022-3	chr13	35949910	35950110	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-17896.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	13.33	12.58	37.65	23.73	17.59	32.3	23.25	38.36	27.34	17.07	37.18	18.8
Merged-chr3-67515234-3	chr3	67515139	67515339	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164763, exon 1 of 6)	exon (NM_001164763, exon 1 of 6)	284.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	14.13	10.56	14.83	15.69	13.91	16.31	11.29	11.21	17.11	22.09	27.13	13.47
Merged-chr4-63277175-3	chr4	63277093	63277293	+	963.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025685, intron 18 of 60)	intron (NM_025685, intron 18 of 60)	20342.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	15.75	11.32	29.66	18.5	8.18	12.86	16.94	19.63	11.21	23.6	52.26	29.13
Merged-chr15-25897758-3	chr15	25897662	25897862	+	963.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-35790.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	10.5	11.07	21.68	19.31	22.91	14.42	18.27	38.83	23.8	16.07	25.63	12.22
Merged-chr9-51963417-3	chr9	51963262	51963462	+	963.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001301728, exon 1 of 4)	exon (NM_001301728, exon 1 of 4)	240.0	NM_001301728	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	12.92	11.07	9.7	10.86	9.41	17.87	21.59	7.04	10.03	8.54	9.55	12.84
Merged-chr17-64753728-3	chr17	64753622	64753822	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-13389.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	15.75	11.07	26.81	19.71	44.18	15.37	21.59	26.47	19.67	32.13	24.62	6.89
Merged-chr1-174038701-3	chr1	174038618	174038818	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-3215.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	12.92	18.36	13.69	11.66	28.64	35.75	31.22	20.16	39.93	51.21	31.66	11.28
Merged-chr16-22461194-3	chr16	22461094	22461294	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21624.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	17.77	11.57	15.97	13.27	37.23	17.25	20.59	22.43	18.49	31.13	31.66	15.66
Merged-chr1-20497753-1	chr1	20497653	20497853	+	963.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	(CTG)n|Simple_repeat|Simple_repeat	120304.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	1.21	1.26	1.71	2.41	12.27	8.78	10.3	15.56	6.29	5.02	7.03	4.39
Merged-chr7-141268598-3	chr7	141268500	141268700	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028069)	TTS (NM_028069)	-2176.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	23.82	10.56	22.82	12.47	16.36	14.42	17.94	18.84	32.06	15.06	37.18	16.6
Merged-chr4-156108496-3	chr4	156108464	156108664	+	963.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(C)n|Simple_repeat|Simple_repeat	-1434.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	6.86	11.07	15.4	16.09	11.86	13.8	14.62	14.47	14.75	17.07	13.57	20.05
Merged-chr14-34312693-3	chr14	34312584	34312784	+	963.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1957.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	19.79	12.58	22.82	11.66	17.59	13.17	14.62	21.39	19.08	17.07	19.09	15.98
Merged-chr5-148489086-3	chr5	148488975	148489175	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	62598.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	10.5	12.58	17.11	11.66	20.46	15.37	12.29	20.94	19.47	24.1	36.68	13.47
Merged-chr9-57466315-3	chr9	57466207	57466407	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1753.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	10.5	16.85	23.96	25.74	22.5	18.81	20.93	26.61	18.88	22.59	31.15	23.81
Merged-chr9-111033942-3	chr9	111033806	111034006	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 13 of 16)	RSINE1|SINE|B4	14614.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	14.94	4.78	22.82	8.04	13.5	13.17	7.64	17.3	30.49	22.59	18.09	9.4
Merged-chr18-35027298-3	chr18	35027198	35027398	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72947.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	27.86	15.85	29.09	43.04	28.23	19.76	20.93	38.1	13.96	8.03	34.67	9.4
Merged-chr17-25016859-3	chr17	25016750	25016950	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	764.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	11.31	22.39	24.53	14.88	20.05	15.99	11.29	10.77	18.88	14.56	13.57	15.98
Merged-chr4-119738817-3	chr4	119738727	119738927	+	963.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75851.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.88	20.12	18.25	14.48	24.55	27.59	9.3	21.73	37.37	21.59	32.16	17.86
Merged-chr11-95859700-2	chr11	95859576	95859776	+	963.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045187, intron 1 of 1)	CpG	859.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	10.5	11.32	14.83	8.45	15.55	12.54	9.3	12.81	14.36	12.55	14.07	14.72
Merged-chr13-109406523-1	chr13	109406423	109406623	+	963.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	81779.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.42	1.76	6.85	5.23	16.36	8.78	14.28	18.98	6.69	2.51	5.53	1.25
Merged-chr2-57115175-6	chr2	57115070	57115270	+	963.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	-132.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	8.88	7.55	7.99	8.04	15.14	7.84	10.96	10.88	20.26	15.06	18.09	12.84
Merged-chr2-30591080-3	chr2	30590953	30591153	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3991.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	15.34	9.06	17.11	17.29	27.41	15.68	7.64	20.61	30.68	30.13	23.62	17.54
Merged-chr17-31291092-3	chr17	31290964	31291164	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4419.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	15.34	13.08	17.68	15.28	30.27	12.86	26.57	19.23	16.33	12.05	22.11	9.71
Merged-chr15-62166036-3	chr15	62165925	62166125	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	53426.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	18.17	20.63	29.09	25.74	27.0	23.2	21.59	37.46	20.06	14.06	17.59	15.04
Merged-chr2-128342454-3	chr2	128342350	128342550	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	86901.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	22.61	10.56	21.11	20.11	26.18	22.26	21.59	20.05	11.8	14.06	15.58	11.59
Merged-chr4-32343426-3	chr4	32343317	32343517	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74018.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	17.77	11.07	42.78	51.08	31.91	21.32	50.49	66.22	12.98	3.01	23.62	23.18
Merged-chr7-93013453-3	chr7	93013367	93013567	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-66412.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	4.04	7.8	13.69	21.32	10.64	2.82	16.94	26.13	19.67	4.52	31.66	19.42
Merged-chr12-25165846-3	chr12	25165753	25165953	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36679.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	32.3	19.87	39.93	18.1	22.91	28.85	27.24	17.66	47.01	26.11	68.84	15.98
Merged-chr4-123562559-3	chr4	123562415	123562615	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-53905.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	8.48	9.31	16.54	14.88	7.36	18.19	11.96	12.45	11.6	12.05	10.55	9.4
Merged-chr2-69635887-3	chr2	69635754	69635954	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-11401.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	5.25	15.09	23.39	7.64	21.27	10.35	23.92	3.9	12.78	15.57	20.1	10.65
Merged-chr19-3923021-3	chr19	3922952	3923152	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6664.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	16.96	21.63	30.8	9.25	20.86	19.44	12.29	15.0	26.55	8.54	18.09	12.84
Merged-chr6-46144695-3	chr6	46144598	46144798	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	1084637.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	17.36	14.59	17.68	25.34	23.73	17.56	30.89	35.64	22.42	22.09	14.07	17.54
Merged-chr3-116598174-3	chr3	116598077	116598277	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	3219.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	23.02	19.87	10.27	18.5	21.27	19.13	21.26	24.9	20.85	23.6	23.11	17.54
Merged-chr19-16404576-2	chr19	16404469	16404669	+	963.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-31098.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.4	0.25	2.85	0.4	11.45	18.5	11.63	19.4	30.88	11.55	22.11	13.78
Merged-chr15-59501664-3	chr15	59501553	59501753	+	963.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	127455.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	26.65	19.62	14.83	20.51	6.55	13.8	13.29	13.35	19.87	20.08	23.62	14.72
Merged-chr17-33940503-4	chr17	33940452	33940652	+	963.630981	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	-171.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	7.27	15.34	15.4	8.45	9.82	14.74	10.63	7.79	15.14	25.11	14.57	9.08
Merged-chr12-85389295-3	chr12	85389174	85389374	+	963.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14557.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	27.86	16.1	14.26	16.89	18.41	34.49	21.59	24.36	30.49	30.63	14.07	17.23
Merged-chr6-31184694-3	chr6	31184597	31184797	+	963.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	33777.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	36.34	24.9	22.82	20.11	38.46	43.59	36.21	40.57	14.75	9.04	29.14	15.04
Merged-chr12-85177287-3	chr12	85177164	85177364	+	963.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008827)	promoter-TSS (NM_008827)	49.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	23.82	39.74	15.4	24.53	14.73	44.84	24.25	28.99	11.6	19.08	14.57	15.66
Merged-chr14-26441621-3	chr14	26441520	26441720	+	963.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	84073.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	18.17	7.04	19.4	27.35	40.5	65.85	22.26	29.22	38.75	38.16	48.74	35.09
Merged-chr3-100993854-3	chr3	100993754	100993954	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167906, exon 9 of 9)	exon (NM_001167906, exon 9 of 9)	-24191.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	17.36	13.83	7.42	12.87	20.86	21.95	21.92	13.74	23.41	18.58	37.18	16.6
Merged-chr6-125351531-3	chr6	125351446	125351646	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1823.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	12.92	10.06	13.69	4.83	12.68	13.8	11.63	15.53	41.89	19.08	46.23	12.53
Merged-chr5-86130022-3	chr5	86129928	86130128	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172712, intron 23 of 32)	intron (NM_172712, intron 23 of 32)	42715.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	23.82	9.81	33.66	18.5	18.41	15.37	19.6	35.1	23.41	14.56	23.62	15.98
Merged-chr17-35202585-3	chr17	35202481	35202681	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-574.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	17.77	20.63	8.56	6.03	20.05	26.97	6.98	2.02	24.98	23.1	21.61	5.95
Merged-chr2-83994134-3	chr2	83994029	83994229	+	963.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52903.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	15.75	12.07	9.7	27.75	24.14	15.99	20.59	21.7	22.42	22.59	23.62	15.66
Merged-chr17-18558944-2	chr17	18558837	18559037	+	963.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-22790.0	NM_001104547	433070.0	Mm.215962	NM_001104547	ENSMUSG00000091679	Vmn2r96	EG433070	vomeronasal 2, receptor 96	protein-coding	0.81	3.02	3.42	5.23	11.05	15.37	18.6	17.5	23.21	3.01	23.11	12.84
Merged-chr2-136485947-2	chr2	136485841	136486041	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46380.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	12.11	18.11	13.12	22.93	32.73	30.73	21.92	48.11	8.85	12.55	19.09	6.58
Merged-chr11-58211139-3	chr11	58211020	58211220	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3857.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	27.05	26.16	27.95	16.09	24.55	34.49	22.59	17.07	35.6	17.07	37.69	9.4
Merged-chr19-56699893-2	chr19	56699793	56699993	+	963.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22479.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.46	5.79	7.42	1.61	14.32	12.23	8.97	12.81	16.52	10.04	9.55	2.51
Merged-chr2-50982899-3	chr2	50982799	50982999	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73215.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	31.5	9.56	13.69	19.71	31.09	39.51	22.26	34.12	35.8	22.09	44.22	23.81
Merged-chr19-5725264-3	chr19	5725192	5725392	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1025.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	12.52	8.8	21.11	16.49	13.91	9.72	19.6	15.36	16.52	25.11	20.1	16.92
Merged-chr2-152736935-2	chr2	152736834	152737034	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355113, intron 1 of 1)	CpG	683.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	17.77	13.08	9.13	24.13	5.73	14.74	2.99	7.07	17.31	13.56	7.54	12.84
Merged-chr7-105810029-3	chr7	105809952	105810152	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025301, exon 3 of 3)	exon (NM_025301, exon 3 of 3)	1035.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	20.19	14.09	12.55	16.49	18.82	19.13	13.62	21.98	24.78	17.57	14.57	17.86
Merged-chr2-131235102-3	chr2	131235011	131235211	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1048.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	19.79	16.6	21.68	22.12	25.36	20.07	14.28	36.53	17.51	11.55	26.63	10.96
Merged-chr11-113747352-3	chr11	113747276	113747476	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	3784.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	19.38	11.82	29.66	15.28	12.27	20.07	14.28	12.56	23.41	13.05	28.64	18.8
Merged-chr11-98754894-3	chr11	98754802	98755002	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	13117.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	21.0	25.15	13.69	6.84	39.68	42.65	22.92	13.26	36.39	35.15	25.12	18.17
Merged-chr2-181274937-3	chr2	181274839	181275039	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	MTEb|LTR|ERVL-MaLR	13027.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	14.13	8.3	33.09	28.15	90.82	84.98	110.61	105.62	95.59	98.41	176.37	65.47
Merged-chr3-103852716-3	chr3	103852623	103852823	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7072.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	13.73	11.32	17.68	14.48	5.32	14.74	7.64	8.52	34.22	22.09	25.63	14.72
Merged-chr14-33303564-3	chr14	33303434	33303634	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86711.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	10.9	11.07	6.28	16.89	12.68	16.31	17.61	9.56	12.78	16.07	13.06	13.16
Merged-chr10-20666778-3	chr10	20666669	20666869	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	58309.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	19.38	13.83	18.25	24.53	23.73	22.58	16.61	25.51	24.78	12.55	22.61	17.23
Merged-chr3-88621800-3	chr3	88621711	88621911	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	417.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	50.88	43.01	44.5	10.86	42.96	76.51	43.85	17.86	65.69	95.4	56.28	17.54
Merged-chr7-80064450-3	chr7	80064322	80064522	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	10835.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	17.36	22.39	22.25	13.27	21.68	26.65	14.62	17.22	18.1	13.05	17.08	8.14
Merged-chr11-8847843-2	chr11	8847721	8847921	+	963.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163370.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	9.69	3.77	13.12	5.63	18.82	13.8	24.91	33.73	13.18	15.57	20.1	18.8
Merged-chr18-54985852-3	chr18	54985766	54985966	+	963.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	4314.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	21.4	8.55	9.7	28.96	45.41	14.11	8.3	21.87	13.77	32.64	32.66	19.42
Merged-chr5-123620971-3	chr5	123620862	123621062	+	963.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 12 of 18)	MTA_Mm|LTR|ERVL-MaLR	-47947.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	14.94	12.07	14.83	23.73	16.77	31.36	19.6	12.25	18.29	30.63	26.63	16.92
Merged-chr2-102744124-3	chr2	102744034	102744234	+	963.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2626.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	31.09	16.1	29.66	17.29	21.68	26.03	10.96	22.99	26.36	29.62	25.12	13.16
Merged-chr4-135236868-3	chr4	135236749	135236949	+	963.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35911.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	25.84	30.43	47.35	45.45	17.18	17.87	23.58	22.49	11.01	22.59	27.64	19.11
Merged-chr11-54437489-3	chr11	54437392	54437592	+	963.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-687.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	16.96	10.31	17.68	10.86	19.23	26.97	12.29	24.64	26.36	19.08	16.58	18.48
Merged-chr9-32672480-4	chr9	32672301	32672501	+	963.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23641.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	14.94	8.05	10.27	26.14	23.32	13.8	10.96	22.57	13.37	10.04	8.54	6.58
Merged-chr1-181232812-2	chr1	181232714	181232914	+	963.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20836.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	13.73	11.07	6.28	6.44	18.0	12.54	18.27	7.91	16.33	20.08	26.63	7.21
Merged-chr2-165321717-3	chr2	165321621	165321821	+	963.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-895.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	17.77	8.55	22.82	12.07	29.86	20.7	23.58	32.83	18.88	29.62	47.74	22.87
Merged-chr12-91778623-1	chr12	91778523	91778723	+	963.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	CpG	7813.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.88	2.52	9.13	7.64	4.5	5.96	10.3	9.0	18.88	15.06	18.09	12.84
Merged-chr12-17000083-3	chr12	16999950	17000150	+	963.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	68.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	41.19	31.94	29.09	24.53	36.0	35.75	22.26	34.32	15.14	10.54	13.57	9.08
Merged-chr7-81155166-3	chr7	81155066	81155266	+	963.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004184, intron 11 of 17)	intron (NM_001004184, intron 11 of 17)	40367.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	26.65	19.37	24.53	11.66	31.09	46.72	9.97	11.13	40.32	27.62	41.2	22.24
Merged-chr8-10831033-3	chr8	10830920	10831120	+	963.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51434.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	15.75	18.61	14.26	16.89	17.18	7.84	8.64	15.67	22.62	15.06	20.1	12.22
Merged-chr9-66907728-2	chr9	66907632	66907832	+	963.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11973.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	21.0	20.63	21.68	14.48	7.36	15.37	20.26	13.32	7.87	8.03	6.53	6.58
Merged-chr5-96161635-3	chr5	96161512	96161712	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285511)	promoter-TSS (NM_001285511)	-65.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	9.29	12.07	17.68	15.69	17.59	12.23	14.28	11.55	19.47	14.06	14.07	15.66
Merged-chr11-116319202-3	chr11	116319082	116319282	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12432.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	19.38	13.58	12.55	11.26	21.68	16.31	6.98	18.64	24.0	41.67	19.09	20.68
Merged-chr19-12592105-3	chr19	12591984	12592184	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4482.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	13.33	17.1	13.69	6.03	14.32	20.38	15.61	11.3	10.42	13.56	21.1	13.78
Merged-chr11-74988290-3	chr11	74988178	74988378	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	62406.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	11.31	11.82	20.54	18.1	11.86	17.25	24.58	18.81	18.1	9.04	30.65	11.28
Merged-chr3-116836164-3	chr3	116836043	116836243	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23424.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	10.09	11.82	26.81	22.12	20.46	13.8	18.93	18.25	11.8	13.56	18.09	16.29
Merged-chr11-83753729-3	chr11	83753631	83753831	+	963.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145432)	promoter-TSS (NM_145432)	94.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	24.23	24.4	13.69	16.89	25.36	32.93	12.95	25.43	33.63	20.59	36.68	27.88
Merged-chr13-112443352-3	chr13	112443251	112443451	+	963.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20719.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	12.92	13.58	34.8	29.76	22.5	16.62	30.89	45.2	26.75	37.66	30.65	16.29
Merged-chr5-138997679-3	chr5	138997564	138997764	+	963.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2711.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	18.57	12.58	8.56	15.69	33.96	16.93	12.62	20.02	34.42	15.57	25.63	13.78
Merged-chr12-29696869-2	chr12	29696780	29696980	+	963.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-10435.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	8.08	3.02	6.85	8.45	29.05	16.31	12.62	25.51	15.14	19.58	24.12	7.83
Merged-chr1-153796236-2	chr1	153796126	153796326	+	963.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 15 of 20)	intron (NM_001243223, intron 15 of 20)	46800.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	14.94	16.6	17.68	33.38	7.77	17.87	7.64	11.33	8.65	11.05	9.04	10.96
Merged-chr5-33270774-2	chr5	33270669	33270869	+	963.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	4235.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	6.46	7.29	7.99	4.83	10.23	7.53	2.99	12.22	19.47	8.54	23.62	12.53
Merged-chr6-143074181-3	chr6	143074095	143074295	+	963.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362117, intron 7 of 26)	intron (NM_001362117, intron 7 of 26)	25957.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	16.96	19.12	34.23	18.5	22.91	22.58	8.3	22.15	18.49	12.05	14.57	12.84
Merged-chr11-74896583-3	chr11	74896516	74896716	+	963.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197943, intron 1 of 22)	CpG	464.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	14.94	11.07	13.12	9.65	20.86	11.6	10.96	13.18	14.36	24.6	17.59	7.21
Merged-chr8-70541159-3	chr8	70541053	70541253	+	963.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	1478.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	14.54	10.82	13.12	15.28	31.5	17.56	18.6	22.01	17.51	13.05	25.63	20.99
Merged-chr2-152081978-3	chr2	152081864	152082064	+	963.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001160410, exon 1 of 2)	5' UTR (NM_001160410, exon 1 of 2)	435.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	13.33	16.6	14.26	13.67	20.46	10.98	17.61	19.4	19.28	9.54	28.14	17.86
Merged-chr18-61074814-3	chr18	61074734	61074934	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008809, intron 14 of 22)	Charlie15b|DNA|hAT-Charlie	29684.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	29.48	26.41	27.95	14.08	48.27	52.05	22.92	17.05	149.48	147.62	127.63	64.53
Merged-chr7-110615394-3	chr7	110615296	110615496	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	-476.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	28.27	28.67	7.99	13.67	22.91	35.75	22.26	17.02	34.62	41.17	12.56	15.04
Merged-chr6-97826875-3	chr6	97826772	97826972	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	19814.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	37.96	36.97	39.36	18.9	44.59	78.39	39.86	62.27	58.02	59.75	57.28	22.24
Merged-chr2-130496394-1	chr2	130496294	130496494	+	963.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	46116.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.23	2.52	0.0	0.0	11.86	12.54	10.96	13.88	1.77	1.0	0.5	1.57
Merged-chr5-65357155-2	chr5	65357059	65357259	+	963.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031180, intron 1 of 4)	Charlie21a|DNA|hAT-Charlie	8748.0	NM_031180	83379.0	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	9.69	3.02	17.11	2.41	14.32	15.05	22.26	22.82	7.67	18.08	26.63	12.84
Merged-chr1-37605878-3	chr1	37605773	37605973	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-64857.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	13.33	14.09	17.68	22.12	23.32	14.42	12.29	19.54	16.92	7.03	22.11	12.84
Merged-chr4-88805968-2	chr4	88805884	88806084	+	963.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243155).3	promoter-TSS (NM_001243155).3	-42.0	NM_001243165	545647.0	Mm.380019	NM_001243165	ENSMUSG00000096582	Gm13289	-	predicted gene 13289	protein-coding	25.84	32.7	18.83	39.01	0.0	0.0	0.0	0.08	15.34	6.53	24.62	11.9
Merged-chr17-26513310-2	chr17	26513208	26513408	+	963.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4836.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.81	1.51	0.0	1.61	13.5	17.87	20.26	20.75	15.74	8.03	20.1	15.04
Merged-chr1-153749812-2	chr1	153749699	153749899	+	963.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011882, intron 1 of 8)	intron (NM_011882, intron 1 of 8)	373.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	21.8	9.06	8.56	16.09	14.32	16.62	14.62	20.66	24.98	23.6	14.57	19.74
Merged-chr13-52982906-3	chr13	52982804	52983004	+	963.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1865.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	19.79	7.55	23.39	17.29	40.5	17.87	17.27	14.97	22.62	31.63	14.07	12.53
Merged-chr17-67384789-3	chr17	67384689	67384889	+	963.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-30298.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	19.79	20.88	34.8	13.27	15.14	44.84	25.24	22.07	29.31	37.16	27.13	10.02
Merged-chr13-42574361-3	chr13	42574257	42574457	+	963.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106442.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	22.21	14.59	23.39	16.09	25.77	27.91	8.64	22.57	28.52	23.1	51.76	29.76
Merged-chr6-89043082-2	chr6	89042981	89043181	+	963.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53029.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	21.4	10.31	27.95	29.36	21.27	19.13	32.88	41.36	1.57	5.02	9.04	8.46
Merged-chr13-93179746-2	chr13	93179635	93179835	+	963.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154997, intron 4 of 15)	intron (NR_154997, intron 4 of 15)	12682.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	4.44	5.03	3.42	9.65	11.05	17.56	10.96	10.6	16.13	6.03	17.08	7.52
Merged-chr3-78919657-3	chr3	78919573	78919773	+	963.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	225214.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	15.34	9.31	8.56	19.71	23.32	14.42	10.63	21.48	28.13	17.07	24.62	11.9
Merged-chr10-96331318-3	chr10	96331224	96331424	+	963.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5B|DNA|hAT-Charlie	105117.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	22.61	21.38	22.82	7.64	20.46	37.0	14.28	23.16	25.18	26.11	29.65	14.41
Merged-chr8-120319644-3	chr8	120319557	120319757	+	963.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91427.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	38.36	28.67	26.24	10.86	34.36	37.94	22.26	24.98	42.48	51.72	49.24	23.49
Merged-chr12-79626866-3	chr12	79626783	79626983	+	963.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297850.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	15.75	10.82	19.97	12.07	29.86	19.44	11.63	9.36	16.92	18.58	21.61	6.89
Merged-chr3-26866801-2	chr3	26866714	26866914	+	963.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029150, intron 5 of 10)	RMER19B|LTR|ERVK	229183.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	2.83	2.52	1.14	4.42	17.59	10.98	35.87	22.91	15.34	11.05	27.64	20.68
Merged-chr12-84854726-1	chr12	84854626	84854826	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013589, intron 2 of 34)	URR1B|DNA|hAT-Charlie	-21076.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	3.23	4.02	6.85	1.21	5.73	8.78	24.25	18.93	3.34	5.52	7.03	5.33
Merged-chr5-138195149-3	chr5	138195048	138195248	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177878, exon 1 of 1)	exon (NM_177878, exon 1 of 1)	834.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	15.75	21.88	14.83	12.47	14.32	22.89	11.63	8.13	14.36	10.04	20.1	10.65
Merged-chr14-65837420-3	chr14	65837352	65837552	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145944, exon 1 of 9)	5' UTR (NM_145944, exon 1 of 9)	150.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	26.65	23.39	13.69	22.12	21.68	21.01	22.59	20.16	20.85	29.62	35.68	22.56
Merged-chr2-174041710-3	chr2	174041600	174041800	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-35351.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	21.4	33.2	13.69	11.26	4.91	15.99	11.29	14.64	26.16	50.71	35.68	9.4
Merged-chr7-30091405-1	chr7	30091305	30091505	+	963.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-895.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	1.21	1.01	1.71	3.62	3.68	2.2	5.65	4.23	15.54	8.03	15.07	5.33
Merged-chrX-169863014-3	chrX	169862914	169863114	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	-16605.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	14.54	18.36	22.82	35.8	27.41	20.7	11.29	25.43	22.23	12.55	25.63	16.92
Merged-chr9-88709688-2	chr9	88709587	88709787	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9900.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	4.85	13.08	18.25	22.93	21.27	21.95	14.28	19.01	35.01	12.55	16.08	11.9
Merged-chr13-97442500-3	chr13	97442403	97442603	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	7533.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	29.07	29.18	27.95	21.32	13.09	17.25	13.95	22.63	26.36	10.04	16.58	11.59
Merged-chr7-28175553-3	chr7	28175445	28175645	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007991, intron 4 of 8)	intron (NM_007991, intron 4 of 8)	-3938.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	14.94	14.09	18.25	25.74	20.05	6.9	12.29	26.44	11.41	4.52	19.09	13.78
Merged-chr3-8667972-3	chr3	8667856	8668056	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	19.79	7.55	10.27	16.89	16.36	15.37	31.56	28.23	16.52	13.56	30.65	19.74
Merged-chr10-116512725-1	chr10	116512625	116512825	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	15224.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	3.77	4.56	7.64	12.68	2.82	2.66	8.5	6.69	2.01	3.01	3.76
Merged-chr5-124477324-3	chr5	124477204	124477404	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	931.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	13.73	14.84	18.83	18.1	5.73	17.56	10.63	12.81	22.42	20.59	33.67	18.8
Merged-chr13-69538483-3	chr13	69538379	69538579	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4615.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	69.05	69.67	95.27	98.54	99.0	130.76	131.54	130.54	22.23	9.04	35.17	11.9
Merged-chr13-43549970-3	chr13	43549862	43550062	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 4 of 8)	intron (NM_001081059, intron 4 of 8)	10229.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	25.04	15.34	33.66	16.49	37.23	16.62	19.93	16.85	16.13	15.57	23.62	11.59
Merged-chr13-45144103-1	chr13	45144003	45144203	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-142007.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	12.92	5.53	5.7	4.83	8.18	13.17	15.28	3.25	4.52	6.03	11.05	5.33
Merged-chr17-28247822-3	chr17	28247723	28247923	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	15069.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	15.75	4.28	21.68	10.46	22.09	24.77	21.59	33.56	23.41	19.58	33.67	23.18
Merged-chr6-34709481-2	chr6	34709390	34709590	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145575)	promoter-TSS (NM_145575)	46.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.44	5.53	0.0	0.8	9.0	33.24	10.96	18.67	14.95	19.08	26.63	24.75
Merged-chr8-70696712-3	chr8	70696633	70696833	+	962.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1006.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	16.96	14.34	19.97	8.85	21.68	21.95	21.26	14.22	14.36	22.09	16.08	11.59
Merged-chr2-170131266-4	chr2	170131170	170131370	+	962.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-50.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	25.84	22.89	15.97	11.26	38.46	42.65	19.6	22.74	60.78	93.39	74.37	28.19
Merged-chr8-10910665-3	chr8	10910570	10910770	+	962.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10748.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	35.13	24.65	33.66	49.47	38.46	26.65	35.87	52.88	21.44	11.05	30.65	19.42
Merged-chr17-5978540-5	chr17	5978409	5978609	+	962.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2923.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	14.54	10.31	10.27	16.89	15.14	15.05	15.28	12.64	17.9	15.57	11.56	10.02
Merged-chr9-104262406-2	chr9	104262316	104262516	+	962.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359740, intron 1 of 56)	CpG	514.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	12.92	15.34	10.84	12.87	16.77	19.13	14.62	18.0	21.05	21.09	20.6	14.41
Merged-chr11-6519812-3	chr11	6519714	6519914	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1144.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	8.88	16.1	21.11	13.27	28.23	17.87	15.28	16.57	16.52	14.06	34.17	13.16
Merged-chr13-21549699-3	chr13	21549615	21549815	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	6305.0	NM_207572	404335.0	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding	1.21	7.8	14.83	15.28	16.36	16.31	16.94	17.16	39.93	36.65	55.78	39.16
Merged-chr8-27176961-3	chr8	27176837	27177037	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2291.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	22.21	19.37	18.83	8.04	19.23	19.44	4.98	11.78	23.21	23.6	15.58	10.02
Merged-chr13-112396757-3	chr13	112396641	112396841	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67329.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	20.59	13.58	21.68	11.66	22.09	17.87	15.28	15.25	21.05	31.63	20.1	21.62
Merged-chr1-57392703-3	chr1	57392608	57392808	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13840.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	13.73	18.11	19.97	11.66	18.0	25.4	22.92	28.46	28.32	28.62	33.67	20.99
Merged-chr14-84443456-3	chr14	84443355	84443555	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-108.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	12.52	17.1	14.26	23.73	39.27	46.72	41.19	44.83	26.95	14.06	29.14	24.12
Merged-chr10-82923697-3	chr10	82923608	82923808	+	962.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	57082.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	12.92	9.31	15.4	14.08	13.91	15.05	15.94	34.37	17.31	11.05	24.12	21.62
Merged-chr15-64095413-3	chr15	64095292	64095492	+	962.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-34944.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	22.61	10.82	13.12	13.27	29.46	15.37	15.28	20.13	20.26	10.54	26.63	17.86
Merged-chr1-180826813-3	chr1	180826750	180826950	+	962.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-13245.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	13.33	10.06	27.95	19.31	27.82	47.35	28.23	41.97	27.73	36.65	48.74	31.64
Merged-chr13-41469727-2	chr13	41469619	41469819	+	962.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17641.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.65	8.55	10.84	4.83	30.27	34.81	36.87	32.61	23.8	23.6	17.08	12.22
Merged-chr2-52287610-2	chr2	52287509	52287709	+	962.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010889, intron 36 of 156)	intron (NM_010889, intron 36 of 156)	-3393.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	1.14	0.0	15.55	12.86	17.61	16.26	24.98	34.14	20.1	10.96
Merged-chr16-49929534-3	chr16	49929421	49929621	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-26309.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	29.07	11.82	25.67	7.64	23.32	34.81	16.28	22.49	38.75	27.62	24.62	13.16
Merged-chr3-105840017-3	chr3	105839910	105840110	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24443.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	24.63	10.82	24.53	19.31	24.96	22.26	21.59	25.18	20.65	19.08	25.12	18.48
Merged-chr10-76352115-3	chr10	76352010	76352210	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008787, intron 41 of 41)	ORR1E|LTR|ERVL-MaLR	-6819.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	17.77	11.32	12.55	25.34	11.05	14.11	12.95	23.02	20.06	9.54	38.69	17.23
Merged-chr2-129413796-3	chr2	129413708	129413908	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42669.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	12.92	14.09	26.24	16.09	40.09	75.88	41.19	54.53	30.88	23.1	54.27	17.86
Merged-chr18-39026602-1	chr18	39026502	39026702	+	962.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	33457.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.08	4.28	8.56	10.05	13.5	11.92	13.29	13.29	3.34	1.51	5.53	1.57
Merged-chr14-74848330-3	chr14	74848234	74848434	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	intron (NM_001033439, intron 2 of 19)	99543.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	20.19	30.43	28.52	9.65	19.23	45.15	14.95	6.64	34.42	42.68	33.67	9.4
Merged-chr3-115716398-3	chr3	115716303	115716503	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1348.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	18.17	8.8	20.54	26.55	29.05	22.89	21.59	35.22	29.9	20.59	37.69	21.3
Merged-chr17-87397296-3	chr17	87397118	87397318	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029298, intron 5 of 6)	MLT1J|LTR|ERVL-MaLR	30523.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	8.08	5.53	18.25	9.65	12.27	5.96	19.93	27.53	20.06	10.04	23.11	15.35
Merged-chr19-46002445-3	chr19	46002347	46002547	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152221, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	-1031.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	23.02	19.62	33.66	12.87	60.14	25.09	15.28	22.26	29.31	42.18	41.71	20.05
Merged-chr4-43466125-3	chr4	43466023	43466223	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11497.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	35.53	19.12	41.07	28.15	31.09	22.58	37.87	54.59	18.49	13.56	21.61	7.83
Merged-chr13-12058643-3	chr13	12058493	12058693	+	962.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	48352.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	5.65	4.28	5.13	10.86	29.86	17.56	27.24	19.77	16.52	14.56	19.09	12.22
Merged-chr6-113285174-3	chr6	113285106	113285306	+	962.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170673, intron 6 of 19)	intron (NM_170673, intron 6 of 19)	2899.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	16.56	6.29	22.25	19.71	26.18	11.92	13.95	13.37	20.26	18.08	30.65	7.21
Merged-chr17-26437655-3	chr17	26437537	26437737	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22672.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	13.73	6.54	3.42	18.9	15.96	15.05	4.32	12.9	18.49	15.06	22.11	15.04
Merged-chr3-132744877-3	chr3	132744763	132744963	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	60719.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	11.31	11.82	9.13	28.96	24.96	15.68	16.61	27.59	14.55	5.52	18.59	9.4
Merged-chr7-84551661-3	chr7	84551559	84551759	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22705.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	16.96	7.55	15.97	16.09	22.09	19.13	25.91	53.13	31.86	20.08	43.21	20.36
Merged-chr3-95658169-3	chr3	95658058	95658258	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	-563.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	21.4	28.67	15.4	20.51	22.91	31.04	9.3	7.43	28.52	34.14	26.13	16.92
Merged-chr12-8327007-3	chr12	8326895	8327095	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	13562.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	13.73	12.32	14.83	16.89	6.14	26.65	17.94	21.28	19.67	16.07	37.69	9.4
Merged-chr11-117727324-3	chr11	117727221	117727421	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	52327.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	28.27	7.55	17.11	22.93	6.95	10.98	10.3	19.68	21.83	7.53	17.59	16.6
Merged-chr3-146157025-3	chr3	146156943	146157143	+	962.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6869.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	25.44	23.39	22.25	10.46	22.91	35.75	19.27	20.97	48.39	30.13	32.66	12.22
Merged-chr11-46774845-3	chr11	46774750	46774950	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	23682.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	14.13	18.36	43.35	14.48	47.46	47.35	31.22	38.38	55.66	37.16	75.87	24.43
Merged-chr2-11394852-3	chr2	11394742	11394942	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	3658.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	12.11	14.59	37.08	26.95	24.14	14.11	21.59	16.21	33.44	27.11	22.11	15.04
Merged-chr18-80163914-3	chr18	80163807	80164007	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12425.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	19.38	15.85	33.66	10.86	20.86	16.31	19.6	12.31	27.34	18.58	32.16	16.29
Merged-chr13-103921581-3	chr13	103921489	103921689	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1003.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	21.4	12.07	14.26	13.27	19.64	20.07	13.62	9.59	28.13	13.05	16.58	12.22
Merged-chr5-139830852-3	chr5	139830755	139830955	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3961.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	11.31	17.86	23.39	20.91	22.09	19.13	17.94	23.5	33.63	29.12	30.15	20.99
Merged-chr11-46312378-3	chr11	46312263	46312463	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252460)	promoter-TSS (NM_001252460)	-5.0	NM_133769	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	8.88	8.3	13.12	10.46	20.86	18.81	21.59	20.8	22.42	21.09	33.67	11.9
Merged-chrX-73717975-3	chrX	73717864	73718064	+	962.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313698)	promoter-TSS (NM_001313698)	-149.0	NM_001313698	27061.0	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	11.71	9.06	13.69	5.63	15.96	13.8	7.97	9.93	19.28	9.04	11.05	12.22
Merged-chr13-43481288-5	chr13	43481172	43481372	+	962.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019930)	promoter-TSS (NM_019930)	-299.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	25.44	24.15	14.83	15.28	24.14	23.2	13.29	17.61	20.65	34.14	23.11	12.84
Merged-chr14-19968905-3	chr14	19968805	19969005	+	962.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	B1F|SINE|Alu	7788.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	12.92	14.09	3.99	16.49	14.32	9.72	23.58	20.16	21.83	31.13	15.07	14.72
Merged-chr13-60736648-3	chr13	60736553	60736753	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49711.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	7.67	11.57	30.8	21.72	18.0	19.76	17.94	33.87	20.06	18.58	22.61	17.54
Merged-chr1-152832523-3	chr1	152832411	152832611	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 11 of 15)	RSINE1|SINE|B4	32358.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	12.52	20.12	21.11	30.97	26.59	21.01	31.22	38.61	15.93	14.06	51.25	16.29
Merged-chr2-116900081-3	chr2	116899992	116900192	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-60.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	13.73	12.83	23.96	11.26	17.59	21.64	15.28	15.62	21.24	21.09	21.1	16.6
Merged-chr18-9538799-3	chr18	9538709	9538909	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80660.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	15.34	8.55	19.4	39.01	17.59	18.81	24.25	51.11	20.46	22.09	40.2	21.3
Merged-chr2-173783913-3	chr2	173783791	173783991	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019806, exon 6 of 6)	3' UTR (NM_019806, exon 6 of 6)	46320.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	19.38	7.55	16.54	5.23	22.91	17.25	28.57	34.12	16.52	18.08	10.05	12.84
Merged-chr5-148886045-3	chr5	148885931	148886131	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153572, intron 9 of 10)	intron (NM_153572, intron 9 of 10)	42616.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	13.73	13.08	7.99	10.86	24.55	15.68	14.28	20.75	51.93	48.7	80.9	36.03
Merged-chr4-24617521-3	chr4	24617418	24617618	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033531, exon 10 of 10)	exon (NM_001033531, exon 10 of 10)	121067.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	17.77	9.31	21.11	23.73	19.23	29.79	23.92	38.41	18.88	27.11	15.07	12.84
Merged-chr4-132563497-3	chr4	132563415	132563615	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	-552.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	14.94	10.06	2.28	2.01	19.64	22.58	11.29	15.76	16.13	11.05	8.54	4.7
Merged-chr5-24025157-1	chr5	24025057	24025257	+	962.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	5155.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.0	1.51	0.0	0.8	6.95	10.66	10.63	14.44	0.79	1.0	0.5	0.63
Merged-chr6-17408292-2	chr6	17408186	17408386	+	962.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55671.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.04	3.52	2.28	1.61	6.95	14.42	9.97	9.08	51.93	52.22	41.2	15.98
Merged-chr5-17999861-2	chr5	17999768	17999968	+	962.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37298.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.46	3.02	8.56	14.08	15.96	4.08	13.62	21.64	16.33	20.59	15.58	11.9
Merged-chr2-155764133-2	chr2	155764026	155764226	+	962.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11216.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	10.5	5.28	7.42	3.22	20.05	23.52	7.31	7.79	22.23	17.57	7.03	5.64
Merged-chr9-41122500-3	chr9	41122407	41122607	+	962.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	ID4|SINE|ID	35555.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	18.98	12.07	18.83	27.75	10.64	20.38	19.6	24.34	19.08	18.08	22.61	8.14
Merged-chr1-161076446-3	chr1	161076294	161076494	+	962.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131030, intron 2 of 4)	B1F2|SINE|Alu	5627.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	14.13	12.83	15.97	18.5	8.18	18.81	21.26	18.17	27.14	27.62	34.67	25.37
Merged-chr1-185203291-3	chr1	185203196	185203396	+	962.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-872.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	11.71	11.07	18.25	22.93	16.36	14.74	14.28	20.44	34.42	30.63	36.68	34.77
Merged-chr11-98051804-3	chr11	98051712	98051912	+	962.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146028, intron 1 of 10)	intron (NM_146028, intron 1 of 10)	1650.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	18.57	14.84	23.96	25.34	18.41	21.32	6.31	25.07	31.86	12.55	29.65	29.13
Merged-chr12-17676618-3	chr12	17676516	17676716	+	962.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14193.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	13.33	7.29	36.51	24.53	19.23	14.11	25.24	29.16	29.9	22.59	33.67	20.68
Merged-chr5-138229726-3	chr5	138229618	138229818	+	962.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013773, exon 2 of 6)	5' UTR (NM_001013773, exon 2 of 6)	3814.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	25.84	24.65	37.65	36.2	38.05	25.4	26.91	43.21	25.37	11.55	22.61	14.72
Merged-chr17-56153911-3	chr17	56153800	56154000	+	962.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8591.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	16.96	12.07	27.95	33.38	19.64	13.17	15.94	21.87	23.6	10.04	27.13	15.04
Merged-chr7-79715820-3	chr7	79715713	79715913	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1627.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	20.59	25.91	22.82	34.19	31.5	25.09	28.23	32.64	17.9	14.06	57.28	25.06
Merged-chr5-146805192-3	chr5	146805094	146805294	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10238.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	35.94	18.61	26.24	19.31	46.23	18.5	35.87	48.28	16.52	9.54	8.04	12.84
Merged-chr16-55803111-3	chr16	55803009	55803209	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19029.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	14.54	12.32	9.7	4.42	13.5	22.58	9.97	10.79	18.69	8.54	20.6	5.33
Merged-chr16-76224231-3	chr16	76224078	76224278	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	101565.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	10.5	17.1	3.99	10.05	11.05	22.26	17.27	13.54	17.9	20.08	23.11	11.28
Merged-chr3-145653439-3	chr3	145653347	145653547	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3462.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	16.15	20.63	9.7	31.37	60.55	48.6	46.5	64.74	56.45	69.29	98.49	46.05
Merged-chr3-104701141-3	chr3	104701040	104701240	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62476.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	29.48	35.97	21.68	24.53	15.96	21.01	9.3	15.53	15.14	21.59	19.6	12.53
Merged-chrX-112371007-3	chrX	112370904	112371104	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026565, intron 8 of 8)	intron (NM_026565, intron 8 of 8)	35775.0	NM_028655	73809.0	Mm.50508	NM_028655	ENSMUSG00000025527	Satl1	4930404K22Rik	spermidine/spermine N1-acetyl transferase-like 1	protein-coding	42.4	27.17	24.53	32.18	51.14	39.2	24.58	41.97	21.05	20.59	13.57	19.11
Merged-chr6-122638774-4	chr6	122638694	122638894	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12370.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	8.48	9.56	10.27	19.71	23.32	28.22	14.28	17.33	43.27	43.68	63.31	41.04
Merged-chr11-23679431-3	chr11	23679349	23679549	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	13473.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	32.3	12.58	17.11	16.89	37.23	36.06	8.3	29.13	30.09	25.11	33.16	33.83
Merged-chr10-70201013-3	chr10	70200898	70201098	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3666.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	16.96	16.1	9.13	15.69	18.41	24.77	18.6	19.49	33.24	47.7	47.74	36.03
Merged-chr6-37223920-2	chr6	37223831	37224031	+	962.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76045.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.63	6.04	2.85	6.44	4.5	11.6	11.96	11.86	13.96	9.54	6.53	16.6
Merged-chr5-3146743-3	chr5	3146616	3146816	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-197177.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	27.05	19.37	23.96	24.53	11.86	17.56	7.31	10.99	15.93	12.55	26.13	12.84
Merged-chr17-35170986-3	chr17	35170876	35171076	+	962.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361501)	TTS (NM_001361501)	5076.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	17.77	25.66	20.54	12.07	14.73	46.41	14.62	10.96	62.55	54.23	34.67	17.54
Merged-chr11-62646363-3	chr11	62646261	62646461	+	962.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1688.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	15.75	23.64	21.11	21.72	27.41	34.49	26.91	19.29	32.06	26.61	30.65	9.71
Merged-chr16-4777299-3	chr16	4777186	4777386	+	962.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	12176.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	17.77	12.58	27.38	13.27	15.14	15.37	13.29	28.6	12.0	12.55	20.6	12.84
Merged-chr19-44146436-3	chr19	44146342	44146542	+	962.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028607)	promoter-TSS (NM_028607)	4.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	18.17	21.63	33.09	14.48	28.64	34.49	16.28	17.5	27.54	40.17	17.59	21.93
Merged-chr6-5291715-3	chr6	5291614	5291814	+	962.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	6659.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	25.44	14.34	19.97	13.27	15.96	30.42	23.58	19.21	19.67	11.05	25.12	2.51
Merged-chr1-105780611-3	chr1	105780503	105780703	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-120.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	14.94	30.94	9.7	19.71	23.32	30.42	15.94	24.08	32.85	20.08	25.63	17.54
Merged-chr12-8501072-4	chr12	8500956	8501156	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1047.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	11.71	5.79	8.56	16.49	18.0	14.11	8.64	20.1	18.69	10.04	15.58	14.72
Merged-chr2-151009296-3	chr2	151009201	151009401	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207204)	promoter-TSS (NM_207204)	97.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	21.0	20.12	9.7	22.12	16.77	21.32	26.57	14.83	14.75	27.11	20.6	13.78
Merged-chr7-16913952-3	chr7	16913841	16914041	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7451.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	13.73	10.56	16.54	8.04	24.96	11.6	15.28	15.08	18.49	19.58	23.62	12.53
Merged-chr14-14098792-3	chr14	14098687	14098887	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	22117.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	14.13	15.85	15.97	8.85	22.09	21.95	12.95	17.41	38.94	36.15	37.18	7.83
Merged-chr11-97026252-3	chr11	97026163	97026363	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	155.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	19.38	15.85	5.7	17.29	21.27	24.46	7.31	20.24	40.32	38.16	23.62	9.08
Merged-chr6-83053785-3	chr6	83053678	83053878	+	962.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-743.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	38.36	27.42	22.25	12.47	22.5	57.7	17.27	18.34	54.68	46.7	45.73	15.35
Merged-chr7-49272589-3	chr7	49272470	49272670	+	962.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	26381.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	11.31	11.82	7.99	14.88	18.82	17.25	15.28	25.79	26.55	15.57	34.67	25.69
Merged-chr6-16889653-3	chr6	16889576	16889776	+	962.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	8765.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	11.31	5.79	13.12	20.51	19.23	17.25	28.57	32.38	18.69	16.57	19.6	12.84
Merged-chr2-147022206-3	chr2	147022119	147022319	+	962.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	9220.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	17.36	8.55	27.95	26.95	27.0	17.87	15.28	26.16	24.39	14.56	26.63	21.62
Merged-chr3-103587867-2	chr3	103587770	103587970	+	962.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	11744.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	9.69	5.28	13.69	9.25	15.55	20.7	11.63	17.33	17.9	23.1	19.09	8.77
Merged-chr9-22130656-3	chr9	22130525	22130725	+	962.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	-27.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	36.34	28.17	21.11	5.63	30.27	55.5	29.56	17.24	35.99	34.14	31.15	8.14
Merged-chr1-176224037-3	chr1	176223934	176224134	+	962.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-10092.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	23.42	24.9	41.64	29.36	12.68	20.7	8.64	35.97	22.62	26.61	17.08	14.1
Merged-chr15-80634940-3	chr15	80634845	80635045	+	962.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010815, intron 2 of 6)	intron (NM_010815, intron 2 of 6)	-11128.0	NR_105922	102466773.0		NR_105922	ENSMUSG00000098631	Mir6957	Gm27895|mmu-mir-6957	microRNA 6957	ncRNA	33.11	23.9	42.78	18.9	26.18	28.54	20.93	20.52	27.14	26.11	15.58	19.42
Merged-chr5-113225302-2	chr5	113225200	113225400	+	962.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1609.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	13.73	13.08	27.95	10.46	21.68	16.93	17.27	14.75	1.18	3.51	3.01	2.51
Merged-chr13-32913254-3	chr13	32913166	32913366	+	962.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15126.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	9.69	14.84	21.11	18.1	13.5	13.8	10.63	19.21	26.75	17.57	34.17	12.22
Merged-chr1-194672039-3	chr1	194671940	194672140	+	962.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	52211.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	12.52	10.56	23.39	14.48	27.82	21.64	25.91	36.7	23.6	16.07	19.6	9.4
Merged-chr4-149841119-3	chr4	149841021	149841221	+	962.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66854.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	13.73	18.86	18.83	18.5	22.09	29.48	20.26	15.7	35.01	26.61	32.16	18.48
Merged-chr8-83103204-3	chr8	83103161	83103361	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62091.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	18.17	15.09	18.83	24.94	22.91	19.13	21.26	22.88	13.77	16.07	6.03	5.33
Merged-chr5-21213977-3	chr5	21213880	21214080	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	27713.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	24.63	16.1	20.54	22.12	28.23	15.99	12.62	20.44	21.64	9.54	21.61	12.22
Merged-chr11-85667721-3	chr11	85667635	85667835	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	52009.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	23.02	23.14	38.79	19.71	27.0	52.99	27.9	24.84	24.98	17.57	14.57	15.98
Merged-chr18-49521710-2	chr18	49521615	49521815	+	962.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45-int|LTR|ERVK	-1574.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	5.65	2.52	4.56	16.09	14.73	16.93	16.94	21.56	18.49	14.06	37.18	17.54
Merged-chr14-26675951-2	chr14	26675846	26676046	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6100.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	5.25	17.36	13.12	14.48	10.23	21.32	11.63	21.81	5.11	7.53	19.6	5.95
Merged-chr18-60712311-3	chr18	60712208	60712408	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	15258.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	19.79	17.1	21.11	23.33	16.77	22.26	24.91	35.05	15.14	8.54	21.61	17.54
Merged-chr10-83343378-3	chr10	83343276	83343476	+	962.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-5559.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	14.13	13.08	15.97	21.32	10.64	18.81	11.96	12.64	34.81	27.11	19.6	12.84
Merged-chr15-8995674-3	chr15	8995569	8995769	+	962.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	27720.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	12.52	10.56	31.38	21.72	24.55	22.26	15.61	20.19	36.58	22.59	36.18	18.48
Merged-chr5-100636996-3	chr5	100636873	100637073	+	962.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37283.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	23.42	22.64	26.24	9.25	21.27	21.32	20.26	19.07	39.53	12.05	34.67	26.94
Merged-chr2-129370624-7	chr2	129370576	129370776	+	962.1785890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008361, intron 1 of 6)	intron (NM_008361, intron 1 of 6)	463.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	37.15	27.42	22.25	19.71	26.18	26.34	13.95	4.88	35.4	30.13	33.16	8.77
Merged-chr8-125569070-3	chr8	125568949	125569149	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	814.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	21.4	22.13	21.68	12.07	13.5	20.07	13.62	10.82	21.64	20.59	17.59	10.02
Merged-chr11-98952870-3	chr11	98952758	98952958	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-7613.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	22.21	13.58	24.53	10.46	19.23	30.1	21.26	39.36	20.65	26.61	11.56	11.59
Merged-chr15-75021534-1	chr15	75021434	75021634	+	962.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-23503.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	6.46	1.01	1.14	0.4	2.05	1.57	0.0	0.0	24.78	29.62	17.59	22.87
Merged-chr9-104574766-3	chr9	104574658	104574858	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	5275.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	15.75	14.34	19.97	17.7	34.36	19.76	44.51	44.58	7.87	9.54	14.57	13.16
Merged-chr3-52444136-3	chr3	52444040	52444240	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72824.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	16.56	29.18	19.4	18.9	11.45	21.64	25.58	31.21	28.52	10.04	39.7	13.78
Merged-chr4-155122758-1	chr4	155122658	155122858	+	962.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	36154.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.63	5.28	2.28	2.01	13.5	21.32	10.3	22.37	0.2	1.0	1.51	2.51
Merged-chr17-34264732-2	chr17	34264625	34264825	+	962.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207105, intron 1 of 5)	CpG	1498.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.86	12.07	6.85	5.63	11.45	16.93	15.94	8.38	18.1	20.08	13.57	16.29
Merged-chr4-144905286-2	chr4	144905196	144905396	+	962.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12159.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.4	2.26	6.85	6.84	14.32	22.89	17.61	25.54	16.52	15.57	22.61	9.4
Merged-chr3-142496798-3	chr3	142496695	142496895	+	962.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153564)	promoter-TSS (NM_153564)	-139.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	62.18	65.15	25.1	14.48	57.27	104.11	40.86	21.5	58.42	63.27	48.24	15.04
Merged-chr4-129827931-3	chr4	129827828	129828028	+	962.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7220.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	23.42	17.1	3.99	12.07	13.09	25.71	5.98	8.94	20.46	26.61	21.1	20.36
Merged-chr10-87910819-3	chr10	87910725	87910925	+	962.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	49714.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	8.88	18.86	14.26	20.51	20.05	28.22	18.27	25.74	23.21	19.08	27.13	22.24
Merged-chr11-120581121-3	chr11	120581026	120581226	+	962.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133796, intron 1 of 5)	CpG	494.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	15.34	28.67	13.69	27.35	21.68	31.04	16.94	19.68	16.13	31.63	21.61	15.04
Merged-chr1-59613998-3	chr1	59613905	59614105	+	962.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	56829.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	18.98	12.07	10.27	13.67	19.23	22.26	11.29	15.14	17.9	23.6	22.61	14.1
Merged-chr2-118520117-3	chr2	118519999	118520199	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24488.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	23.42	22.39	23.96	11.66	19.64	36.37	18.93	25.91	30.09	24.6	28.64	13.78
Merged-chr10-96379193-3	chr10	96379094	96379294	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152987.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	19.38	18.11	35.37	19.31	25.36	23.52	27.57	24.67	24.78	12.55	17.59	14.72
Merged-chr12-85256336-3	chr12	85256249	85256449	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175337, intron 5 of 11)	MER44B|DNA|TcMar-Tigger	-10364.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	24.23	19.87	29.09	10.46	27.41	34.49	20.26	12.45	35.4	30.63	10.05	5.64
Merged-chr13-43496795-3	chr13	43496698	43496898	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15825.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	17.77	11.57	10.84	22.93	21.68	21.64	13.95	26.58	42.48	43.18	30.65	15.66
Merged-chr18-66453563-3	chr18	66453416	66453616	+	962.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5088.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.06	15.85	29.66	12.07	9.82	15.68	13.95	17.69	31.08	21.09	33.16	23.18
Merged-chr7-81862568-3	chr7	81862475	81862675	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-112.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	17.77	15.09	18.83	10.46	27.41	33.24	17.94	23.3	19.08	16.07	22.11	10.65
Merged-chr9-47708471-3	chr9	47708375	47708575	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	109733.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	16.96	17.1	6.85	17.7	14.73	19.13	6.64	10.85	19.67	20.59	21.1	14.72
Merged-chr11-95293256-3	chr11	95293168	95293368	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	16978.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	14.13	14.84	19.97	8.04	21.27	16.62	8.3	20.8	17.9	20.59	16.58	14.41
Merged-chr1-191438639-3	chr1	191438534	191438734	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 5 of 5)	intron (NR_151615, intron 5 of 5)	26414.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	14.94	12.07	20.54	14.08	10.23	21.01	12.95	15.0	56.06	57.24	69.34	48.24
Merged-chr3-115692578-2	chr3	115692408	115692608	+	962.0238039999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22547.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.02	1.26	3.42	3.22	7.36	6.59	3.99	8.3	13.18	9.54	21.61	9.71
Merged-chr14-48120816-1	chr14	48120716	48120916	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033602)	promoter-TSS (NM_033602)	-53.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	2.83	2.52	2.28	0.0	3.27	9.72	4.32	8.36	0.59	3.51	3.01	1.25
Merged-chr2-156258300-1	chr2	156258200	156258400	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172674, intron 4 of 17)	B1_Mur4|SINE|Alu	-54173.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.46	1.51	11.41	5.23	15.14	13.17	10.63	11.92	2.16	6.53	2.51	4.39
Merged-chr11-105181505-4	chr11	105181477	105181677	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	50.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	30.28	33.96	22.25	12.47	19.64	26.97	15.28	18.03	32.65	51.21	24.62	30.07
Merged-chr17-24674484-1	chr17	24674384	24674584	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	4797.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	23.82	17.61	14.83	4.42	2.05	9.72	3.99	3.31	5.51	9.54	15.07	0.94
Merged-chr11-120916656-3	chr11	120916557	120916757	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	16215.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	27.46	20.12	23.96	17.29	10.23	26.34	11.96	10.88	41.5	34.65	18.59	16.29
Merged-chr10-89442820-3	chr10	89442707	89442907	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1160.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	25.44	18.61	13.69	14.08	29.86	33.55	18.27	23.86	57.24	30.63	24.12	25.37
Merged-chr11-116654473-2	chr11	116654385	116654585	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030206)	promoter-TSS (NM_030206)	-172.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	16.56	19.12	17.68	12.47	23.73	16.62	8.64	9.87	17.7	11.05	9.55	5.64
Merged-chr3-7501886-1	chr3	7501786	7501986	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1540.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	9.69	6.79	3.42	11.66	6.55	8.47	6.31	11.36	7.28	6.53	10.05	2.82
Merged-chr15-11987897-1	chr15	11987797	11987997	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011294, intron 3 of 4)	RMER6B|LTR|ERVK	8110.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	14.54	5.03	5.13	10.46	0.41	0.31	0.0	2.41	1.18	0.0	0.5	0.94
Merged-chr18-42790534-1	chr18	42790434	42790634	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	108972.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.0	1.51	3.42	0.0	10.64	1.25	2.99	8.07	3.74	5.52	1.51	3.45
Merged-chr1-39918927-3	chr1	39918848	39919048	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	18035.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	24.23	10.56	34.23	25.74	14.32	16.62	19.93	40.96	19.67	7.53	22.61	17.23
Merged-chr19-8763530-3	chr19	8763443	8763643	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276704, exon 4 of 20)	exon (NM_001276704, exon 4 of 20)	6426.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	22.21	19.12	38.79	26.95	23.73	21.32	11.96	31.15	24.59	24.1	16.08	10.34
Merged-chr14-102828647-3	chr14	102828539	102828739	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153993.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	19.79	17.61	29.09	26.95	33.96	29.48	21.59	27.53	23.21	15.57	47.23	8.46
Merged-chr16-36827879-1	chr16	36827779	36827979	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177128)	promoter-TSS (NM_177128)	380.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	3.63	11.57	1.71	8.85	6.14	9.09	5.31	8.19	4.33	10.54	3.52	6.89
Merged-chr2-165112365-3	chr2	165112264	165112464	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_174988, exon 12 of 12)	exon (NM_174988, exon 12 of 12)	-21614.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	27.46	17.61	15.97	12.87	17.59	21.64	11.96	17.72	30.88	32.13	34.67	10.34
Merged-chr9-31841327-1	chr9	31841227	31841427	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71958.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	5.25	6.29	2.28	8.04	8.18	3.76	3.99	11.69	2.75	2.51	3.01	2.19
Merged-chr6-128355919-3	chr6	128355814	128356014	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011657)	promoter-TSS (NM_011657)	-63.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	12.52	10.82	5.13	11.66	18.41	16.31	9.63	11.72	23.41	20.59	40.2	15.98
Merged-chr12-73291869-1	chr12	73291769	73291969	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	5021.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	6.06	4.02	8.56	14.48	12.68	19.44	9.3	19.88	0.2	0.5	1.0	0.0
Merged-chr10-56377295-1	chr10	56377195	56377395	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010288)	promoter-TSS (NM_010288)	-5.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	5.25	3.02	3.99	7.24	13.5	10.66	13.29	15.17	8.26	4.02	2.51	3.45
Merged-chr6-83598189-3	chr6	83598095	83598295	+	961.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25691.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	34.73	20.63	35.94	14.08	24.55	59.89	33.22	21.22	32.06	26.61	41.2	8.14
Merged-chr11-90238801-3	chr11	90238697	90238897	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10679.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	12.52	22.89	14.83	6.44	21.27	30.73	21.92	9.98	28.32	41.17	35.17	8.14
Merged-chr5-102009872-3	chr5	102009770	102009970	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172882, exon 3 of 67)	5' UTR (NM_172882, exon 3 of 67)	60051.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	12.52	14.09	17.11	15.69	11.45	6.9	16.94	16.09	21.64	20.59	20.6	16.6
Merged-chr8-40927776-3	chr8	40927673	40927873	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	1540.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	9.29	13.33	13.12	20.51	18.82	14.42	16.94	23.24	14.55	13.05	19.6	8.77
Merged-chr10-41530167-3	chr10	41530095	41530295	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016898, exon 6 of 6)	3' UTR (NM_016898, exon 6 of 6)	10695.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	24.63	24.9	83.86	51.88	25.36	13.17	21.92	41.05	25.96	25.61	47.74	13.16
Merged-chr1-92061843-3	chr1	92061746	92061946	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	118495.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	18.98	11.32	19.97	16.89	12.68	19.13	21.26	24.84	24.19	10.54	34.67	21.62
Merged-chr10-117843804-3	chr10	117843704	117843904	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	2170.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	14.13	10.56	14.26	13.27	19.23	27.28	21.59	24.25	27.93	18.58	26.13	9.71
Merged-chr12-98920566-3	chr12	98920432	98920632	+	961.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	-42.0	NM_029553	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	18.17	14.09	11.98	11.26	29.05	17.87	20.59	8.97	22.82	38.16	29.14	20.99
Merged-chr8-14627141-3	chr8	14627047	14627247	+	961.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-261389.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	21.0	16.35	11.41	30.16	45.82	27.28	15.28	42.39	27.34	31.63	47.23	30.7
Merged-chr1-144301707-3	chr1	144301609	144301809	+	961.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-52605.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	29.88	20.37	13.69	8.85	22.91	36.06	25.58	18.36	25.57	13.56	9.55	5.64
Merged-chr4-9074573-2	chr4	9074455	9074655	+	961.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-194738.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	6.46	5.53	11.98	7.24	17.59	25.4	23.25	21.5	22.62	16.57	27.13	8.77
Merged-chr2-84370550-3	chr2	84370454	84370654	+	961.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 6 of 15)	intron (NM_018782, intron 6 of 15)	54712.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	30.69	11.57	35.94	24.53	31.91	37.0	43.85	27.31	15.74	25.61	28.64	10.96
Merged-chr2-165987449-3	chr2	165987345	165987545	+	961.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5192.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	16.15	19.12	34.23	11.66	15.96	43.59	21.26	15.67	33.04	30.13	29.65	20.36
Merged-chr7-122945364-3	chr7	122945264	122945464	+	961.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25095.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	29.88	14.84	20.54	25.34	20.05	15.68	3.65	15.48	24.59	23.1	29.65	20.36
Merged-chr3-142470198-3	chr3	142470096	142470296	+	961.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26738.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	36.75	31.19	18.83	16.89	18.0	47.98	15.94	12.45	23.21	25.11	22.11	8.46
Merged-chr1-151958669-3	chr1	151958567	151958767	+	961.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	L1M3|LINE|L1	131653.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	24.23	22.39	25.1	22.93	22.5	15.37	6.64	26.89	24.78	30.63	24.62	21.62
Merged-chr3-107110431-2	chr3	107110337	107110537	+	961.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	8870.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.23	2.52	3.99	1.61	10.23	15.99	11.29	16.04	33.63	13.56	32.16	13.16
Merged-chr3-88738820-3	chr3	88738735	88738935	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	21981.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	15.34	22.39	18.25	11.66	23.73	21.95	9.97	18.48	23.41	22.59	19.6	13.47
Merged-chr12-40223970-3	chr12	40223872	40224072	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013562)	promoter-TSS (NM_013562)	608.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	19.79	16.1	18.83	8.85	29.86	43.59	14.28	22.93	32.85	18.58	42.21	21.93
Merged-chr7-55846360-3	chr7	55846246	55846446	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	4275.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	25.44	25.15	30.23	8.45	38.46	57.07	25.91	19.74	51.34	52.72	62.81	21.93
Merged-chr17-34072264-3	chr17	34072171	34072371	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	7.67	12.83	25.67	18.9	0.82	6.9	13.62	7.46	41.11	36.15	55.27	29.13
Merged-chr15-78246344-3	chr15	78246266	78246466	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	1555.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	14.13	17.1	33.66	24.13	12.27	35.12	33.88	20.86	28.52	31.63	51.76	16.29
Merged-chr18-69595946-3	chr18	69595859	69596059	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249799.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	13.73	8.05	6.28	14.88	20.05	20.38	13.62	28.21	38.75	12.55	21.61	12.22
Merged-chr18-10646666-3	chr18	10646550	10646750	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134130, intron 8 of 8)	intron (NM_134130, intron 8 of 8)	28854.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	12.11	22.89	33.09	12.07	25.77	41.08	30.23	31.82	27.14	28.62	34.67	21.62
Merged-chr19-33120201-3	chr19	33120118	33120318	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36894.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	16.96	11.57	31.95	34.19	22.5	17.87	24.91	45.9	15.93	16.57	15.07	8.77
Merged-chr2-180251435-3	chr2	180251338	180251538	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5941.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	20.59	9.31	9.7	18.5	16.77	21.95	8.64	14.19	18.69	19.58	26.13	15.04
Merged-chr11-63827779-3	chr11	63827697	63827897	+	961.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94487.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	18.17	16.85	22.82	12.87	6.95	10.98	8.3	5.78	22.82	34.14	29.65	16.6
Merged-chr11-63135856-3	chr11	63135760	63135960	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3057.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	17.77	20.37	14.26	19.31	23.73	27.28	23.58	29.66	18.88	22.59	18.59	20.68
Merged-chr17-5711571-3	chr17	5711460	5711660	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-87097.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	14.13	20.12	17.68	24.53	18.0	25.09	12.62	22.63	16.52	14.06	23.62	26.31
Merged-chr1-155065947-3	chr1	155065848	155066048	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	17316.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	14.54	11.57	17.11	25.34	17.18	20.7	11.29	25.18	22.23	12.05	29.65	16.92
Merged-chr5-65960460-3	chr5	65960364	65960564	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6660.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	17.77	13.08	13.12	25.74	21.27	22.26	14.62	24.79	24.19	22.59	20.6	20.68
Merged-chr1-86179034-3	chr1	86178940	86179140	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 9 of 20)	intron (NM_027456, intron 9 of 20)	24260.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	49.26	52.82	61.61	49.07	12.27	19.44	9.97	13.15	25.77	27.11	26.13	34.15
Merged-chr16-25805158-2	chr16	25805053	25805253	+	961.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127262, intron 1 of 10)	intron (NM_001127262, intron 1 of 10)	3237.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	2.42	3.52	1.71	12.87	5.32	6.9	13.95	14.55	22.03	7.03	33.16	6.58
Merged-chr2-165946361-3	chr2	165946255	165946455	+	961.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-46282.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	11.71	18.11	20.54	20.91	12.68	15.99	19.27	16.91	37.96	34.65	29.14	24.43
Merged-chr2-58802677-3	chr2	58802586	58802786	+	961.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47502.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	15.75	21.88	41.07	20.91	14.32	23.2	20.59	24.59	33.24	17.07	28.14	21.3
Merged-chr7-75686252-3	chr7	75686098	75686298	+	961.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-162140.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	22.61	13.33	13.69	31.37	7.77	21.95	18.93	20.19	20.06	17.07	17.59	7.83
Merged-chr2-119740762-3	chr2	119740674	119740874	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1563.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	11.71	15.59	17.68	16.09	24.96	16.31	10.96	8.3	22.42	13.05	28.14	13.47
Merged-chr11-72205639-3	chr11	72205551	72205751	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1831.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	22.61	19.37	10.84	18.1	18.41	36.37	12.29	26.5	33.44	26.61	32.66	18.8
Merged-chr5-63970629-4	chr5	63970500	63970700	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1703.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	7.27	10.82	8.56	9.65	18.82	18.5	17.27	16.79	25.57	16.57	33.16	19.11
Merged-chr9-100499096-1	chr9	100498996	100499196	+	961.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	L1M4|LINE|L1	7760.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	9.69	6.54	9.13	3.62	4.09	12.54	8.97	14.86	6.29	10.04	5.53	5.33
Merged-chr11-115612931-3	chr11	115612807	115613007	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	62.0	NM_001243584	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	13.73	11.07	7.99	4.42	27.82	26.03	14.62	12.03	22.82	31.63	19.09	15.04
Merged-chr6-136492382-3	chr6	136492290	136492490	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26461.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	10.9	16.35	18.83	22.52	25.77	31.67	20.93	32.58	41.5	48.7	44.22	24.75
Merged-chr2-173538711-3	chr2	173538597	173538797	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16105.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	14.94	9.56	6.85	14.08	18.41	16.93	30.56	30.76	36.78	30.13	46.73	20.68
Merged-chr15-76948493-3	chr15	76948436	76948636	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	275.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	6.86	12.83	14.83	22.12	11.05	18.81	6.98	11.07	16.13	16.57	12.06	18.17
Merged-chr15-95963246-3	chr15	95963146	95963346	+	961.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 17 of 19)	MIRc|SINE|MIR	116307.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	25.44	18.86	42.78	37.4	12.68	19.76	20.93	36.95	24.78	15.06	37.69	16.29
Merged-chr7-132813141-3	chr7	132813035	132813235	+	961.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	61.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	12.11	17.36	22.82	15.28	12.68	11.6	16.94	20.44	20.46	15.57	15.58	11.59
Merged-chr19-24281838-3	chr19	24281744	24281944	+	961.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1258.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	23.42	20.63	26.81	32.98	22.5	22.89	14.28	18.76	15.14	13.05	17.08	13.78
Merged-chr7-88230957-3	chr7	88230865	88231065	+	961.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCc|LINE|L1	-47120.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	18.98	20.12	19.97	18.9	17.59	19.44	12.62	23.83	29.5	13.05	20.6	9.08
Merged-chr2-168557060-3	chr2	168556966	168557166	+	961.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	33299.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	18.98	21.38	13.69	17.29	21.27	12.54	9.63	18.14	15.54	4.02	8.04	9.71
Merged-chr15-59680900-5	chr15	59680828	59681028	+	961.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32274.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	15.75	11.32	15.97	14.08	22.5	20.38	17.61	16.07	12.98	11.55	19.09	13.78
Merged-chr14-70867958-2	chr14	70867858	70868058	+	961.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045939, intron 2 of 3)	Lx|LINE|L1	15025.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	19.79	26.66	13.12	13.27	6.14	25.09	13.29	3.28	8.65	8.03	17.08	3.13
Merged-chr2-122348794-4	chr2	122348713	122348913	+	961.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001099297)	TTS (NM_001099297)	20105.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	13.33	23.39	13.12	17.7	15.55	15.99	19.27	17.55	14.36	22.59	12.06	10.34
Merged-chr11-87039479-3	chr11	87039372	87039572	+	961.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025638, intron 7 of 9)	B4A|SINE|B4	34665.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	16.56	8.3	17.11	14.48	24.14	18.81	17.61	23.36	17.31	13.56	6.03	15.98
Merged-chr2-103683089-3	chr2	103682989	103683189	+	961.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78181.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	5.65	13.33	27.95	29.76	14.73	7.53	8.3	12.73	28.91	17.57	32.66	16.29
Merged-chr16-90222411-3	chr16	90222305	90222505	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1663.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	21.0	18.36	11.41	18.5	22.09	8.78	16.28	20.89	21.64	14.06	28.14	16.6
Merged-chr16-57339625-3	chr16	57339524	57339724	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-13653.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	18.98	16.6	16.54	10.46	13.5	15.68	10.63	14.44	30.09	27.62	21.61	3.76
Merged-chr12-3391563-3	chr12	3391463	3391663	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	26431.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	32.3	9.56	30.23	24.94	26.18	31.98	30.89	43.68	39.34	39.67	36.18	26.0
Merged-chr16-13372151-3	chr16	13372064	13372264	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	13743.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	13.33	12.83	19.97	8.45	23.73	19.44	20.93	25.04	16.33	16.57	20.6	10.96
Merged-chr13-113640663-1	chr13	113640563	113640763	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22099.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	21.4	33.96	26.24	14.08	0.0	0.0	0.0	0.0	0.39	0.5	0.0	0.0
Merged-chr7-25765257-3	chr7	25765160	25765360	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10501.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	14.13	12.07	11.98	22.12	17.59	22.89	26.24	14.07	24.0	27.62	21.1	14.72
Merged-chr6-29529594-2	chr6	29529486	29529686	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	304.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	17.36	8.3	17.68	14.48	12.27	12.23	11.29	19.18	16.72	19.58	19.09	10.65
Merged-chr14-17410971-3	chr14	17410869	17411069	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-249991.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	10.5	11.32	18.83	18.1	28.23	31.67	23.92	40.21	29.5	20.59	48.74	27.57
Merged-chr19-23028411-2	chr19	23028317	23028517	+	961.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112809.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.23	0.75	3.42	4.42	26.18	17.25	20.59	20.3	21.24	24.6	30.15	7.83
Merged-chr10-59261747-3	chr10	59261623	59261823	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	39801.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	36.75	55.34	42.78	17.29	56.87	104.11	20.59	22.12	65.5	89.88	61.3	20.36
Merged-chr1-191097246-3	chr1	191097155	191097355	+	961.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	13.73	11.82	20.54	10.05	18.82	21.95	14.62	15.73	29.11	22.09	19.09	11.59
Merged-chr9-21368421-3	chr9	21368321	21368521	+	961.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277322)	promoter-TSS (NM_001277322)	-111.0	NM_001277322	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	14.54	9.81	7.99	11.66	9.82	25.71	9.63	13.91	21.05	18.08	13.06	20.68
Merged-chr8-117280584-3	chr8	117280496	117280696	+	961.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23577.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	11.31	12.07	15.97	18.1	22.09	21.95	11.63	21.84	18.69	17.07	34.17	22.56
Merged-chr8-70342412-3	chr8	70342321	70342521	+	961.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030680, intron 3 of 23)	intron (NM_030680, intron 3 of 23)	10858.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	11.31	16.1	33.09	20.51	23.32	22.26	26.57	18.93	39.53	30.13	19.6	19.11
Merged-chr3-61365702-4	chr3	61365533	61365733	+	961.4249880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	1126.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	9.69	14.59	11.41	5.23	15.14	13.48	10.96	6.5	10.23	22.59	23.62	15.35
Merged-chr1-21166455-2	chr1	21166355	21166555	+	961.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52120.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	12.11	12.32	15.97	21.32	31.5	32.61	35.21	37.85	3.34	1.0	6.03	5.95
Merged-chr13-4616802-3	chr13	4616718	4616918	+	961.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7654.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	39.57	34.21	18.25	32.18	31.91	42.02	30.56	27.08	53.7	56.24	51.76	22.87
Merged-chr7-6169668-3	chr7	6169569	6169769	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91A|DNA|hAT-Tip100	-2844.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	23.02	16.85	13.69	26.55	22.91	17.56	34.55	34.46	14.55	17.57	25.12	20.99
Merged-chr11-106134859-3	chr11	106134758	106134958	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	25069.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	10.9	11.57	23.96	7.24	14.73	18.81	11.29	19.49	14.75	15.57	18.09	11.59
Merged-chr2-153496532-3	chr2	153496414	153496614	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	33457.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	10.5	11.32	17.68	12.47	20.46	14.11	12.29	27.22	17.51	16.57	26.63	10.65
Merged-chr3-31090182-3	chr3	31090084	31090284	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4874.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	18.57	16.35	19.97	12.07	21.68	27.91	14.95	19.21	49.57	58.75	63.31	38.22
Merged-chr14-73169525-3	chr14	73169417	73169617	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	Lx3_Mus|LINE|L1	26732.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	14.54	7.29	14.83	14.88	16.77	20.38	22.59	13.07	25.37	23.6	23.62	15.98
Merged-chr4-133873091-3	chr4	133872977	133873177	+	961.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	1654.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	22.21	28.93	17.68	14.48	31.91	31.04	15.61	15.76	33.04	43.68	32.16	10.02
Merged-chr6-136835729-2	chr6	136835618	136835818	+	961.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039558)	promoter-TSS (NM_001039558)	-268.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	10.09	15.09	7.99	16.09	15.96	21.32	16.94	14.3	2.56	2.51	4.02	0.63
Merged-chr5-122637921-2	chr5	122637827	122638027	+	961.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5984.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	23.82	32.2	47.92	10.05	30.27	43.27	17.27	22.35	6.29	7.03	7.54	4.39
Merged-chr4-133412969-2	chr4	133412859	133413059	+	961.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016981, intron 2 of 11)	B1_Mus1|SINE|Alu	43183.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	10.9	9.81	15.97	17.7	16.77	19.13	14.95	29.75	4.33	1.51	1.51	3.76
Merged-chr13-100452609-2	chr13	100452524	100452724	+	961.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008670, intron 1 of 15)	intron (NM_008670, intron 1 of 15)	240.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.83	2.01	1.14	7.64	13.09	12.54	19.6	5.58	35.6	34.14	29.65	18.48
Merged-chr13-58128085-3	chr13	58127959	58128159	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	497.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	10.5	15.34	10.27	14.88	12.68	21.01	19.27	10.77	20.06	24.1	26.13	19.74
Merged-chr2-73041946-3	chr2	73041847	73042047	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61501.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	9.29	17.36	26.81	23.73	25.36	25.71	15.94	27.7	35.21	29.12	28.64	15.66
Merged-chr2-34646462-3	chr2	34646368	34646568	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	108764.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	16.15	13.33	13.69	10.05	26.18	31.04	16.28	17.13	24.0	27.62	34.17	16.29
Merged-chr10-67114017-3	chr10	67113925	67114125	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13233.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	21.8	9.81	17.68	9.25	12.68	24.15	3.65	17.16	33.44	17.07	31.66	13.16
Merged-chr19-41764088-3	chr19	41764000	41764200	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17139.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	12.92	13.33	15.97	20.11	16.77	17.87	11.96	16.07	22.42	10.54	24.12	14.72
Merged-chr14-63111824-3	chr14	63111732	63111932	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-10630.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	13.33	14.09	15.4	13.67	25.77	26.34	8.64	19.99	31.86	26.11	20.6	12.53
Merged-chr15-88733341-3	chr15	88733257	88733457	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	862.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	12.92	15.34	8.56	10.86	16.36	27.59	19.27	16.23	20.46	16.07	25.12	14.1
Merged-chr1-171825613-1	chr1	171825513	171825713	+	961.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14084.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.46	3.77	0.0	2.41	14.32	3.45	11.96	11.83	4.33	4.52	5.53	1.88
Merged-chrX-48453621-4	chrX	48453505	48453705	+	961.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	CpG	9527.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	10.5	10.56	9.13	9.65	8.59	15.37	22.26	9.98	15.93	17.57	17.59	14.72
Merged-chr6-145348351-3	chr6	145348237	145348437	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-39288.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	32.3	19.62	25.1	8.85	26.18	47.35	16.61	21.31	55.66	35.65	44.22	22.56
Merged-chr16-21716788-3	chr16	21716689	21716889	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22124.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	12.11	13.08	12.55	16.89	26.18	46.1	25.24	19.4	21.24	7.53	29.65	11.9
Merged-chr5-149235277-3	chr5	149235178	149235378	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-29726.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	13.33	18.36	22.25	24.13	24.14	12.86	19.27	49.46	19.08	12.05	47.23	15.66
Merged-chr12-86906525-3	chr12	86906360	86906560	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21646.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.06	2.77	9.7	10.46	10.64	10.35	6.64	8.94	16.13	8.54	18.09	10.65
Merged-chr15-35705737-3	chr15	35705653	35705853	+	961.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-44706.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	23.42	9.56	13.69	25.34	29.86	27.59	28.57	45.42	20.06	11.55	39.19	20.05
Merged-chrX-163744118-3	chrX	163743996	163744196	+	961.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17236.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	20.59	9.31	15.4	16.89	21.68	26.97	9.63	31.32	20.06	17.57	47.74	19.42
Merged-chr6-52303644-1	chr6	52303544	52303744	+	961.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9854.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	6.46	8.55	5.7	4.83	15.14	14.11	8.64	13.29	5.9	3.51	5.02	3.76
Merged-chr15-101267623-4	chr15	101267536	101267736	+	961.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	790.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	62.99	59.36	23.39	12.07	37.23	55.82	8.3	11.07	87.92	119.5	50.75	22.56
Merged-chr9-95637797-5	chr9	95637668	95637868	+	961.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029620, exon 1 of 9)	5' UTR (NM_029620, exon 1 of 9)	140.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	10.09	9.81	11.41	11.26	12.68	12.54	19.93	14.94	18.69	19.58	22.11	9.71
Merged-chrX-159200312-3	chrX	159200212	159200412	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55470.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	22.61	18.11	18.25	30.16	29.05	21.64	15.94	25.49	26.95	18.58	16.58	10.02
Merged-chr10-44460299-3	chr10	44460178	44460378	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1530.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	15.34	12.32	17.68	10.86	6.95	18.5	3.99	16.85	33.63	16.07	10.05	18.8
Merged-chr7-123394272-3	chr7	123394181	123394381	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-13536.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	14.13	12.83	33.66	21.32	20.46	20.7	23.58	31.49	27.93	23.1	18.09	15.04
Merged-chr7-141369080-3	chr7	141368973	141369173	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3963.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	15.75	18.86	6.28	14.88	24.14	12.54	20.59	20.05	11.8	13.56	20.1	6.58
Merged-chr3-38114637-3	chr3	38114538	38114738	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93481.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	37.15	47.54	17.11	32.58	22.91	63.97	24.91	14.64	43.07	35.65	36.68	11.59
Merged-chr6-88861164-3	chr6	88861068	88861268	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347327, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	12876.0	NM_176973	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	18.57	26.91	6.85	14.48	15.96	20.07	11.63	10.96	22.42	20.59	17.59	14.1
Merged-chr12-102695512-3	chr12	102695379	102695579	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9390.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	18.57	16.85	11.41	22.12	17.18	12.54	14.62	19.09	17.51	21.09	18.59	14.72
Merged-chr8-70718566-4	chr8	70718508	70718708	+	961.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195253)	promoter-TSS (NM_001195253)	65.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	8.08	12.58	2.28	12.07	8.18	6.9	10.3	7.91	15.93	12.55	10.05	12.22
Merged-chr5-148554902-3	chr5	148554778	148554978	+	961.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2090.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	13.73	8.05	21.68	20.11	13.5	30.42	32.88	28.18	44.06	50.21	57.28	26.31
Merged-chr13-113807336-1	chr13	113807236	113807436	+	961.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	12828.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	13.33	16.85	15.4	24.13	0.82	0.0	1.33	0.0	0.0	0.5	0.0	0.94
Merged-chr16-21412799-3	chr16	21412699	21412899	+	961.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10319.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	16.96	10.56	19.4	15.69	20.86	24.46	13.29	14.1	24.98	13.05	21.1	11.9
Merged-chr5-144965947-5	chr5	144965823	144966023	+	961.159973	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029438)	promoter-TSS (NM_029438)	-93.0	NM_029438	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	17.36	10.06	14.26	9.25	18.0	15.05	16.28	12.5	21.24	18.58	20.6	9.71
Merged-chr11-80142130-3	chr11	80141983	80142183	+	961.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183275)	promoter-TSS (NM_183275)	70.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	17.36	17.61	14.26	10.46	27.82	32.61	17.27	15.11	23.41	19.08	12.06	8.14
Merged-chr18-68220451-3	chr18	68220342	68220542	+	961.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	L1M4b|LINE|L1	-7504.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	14.54	14.59	21.68	22.12	18.41	11.29	16.61	21.53	19.47	22.59	28.14	17.86
Merged-chr1-190911064-2	chr1	190910964	190911164	+	961.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	706.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	13.73	16.1	10.27	6.84	9.41	20.7	12.29	7.68	4.92	9.04	4.02	4.07
Merged-chr3-84334060-3	chr3	84333986	84334186	+	961.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29311.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	20.59	10.31	5.7	13.67	18.82	27.59	24.58	29.07	23.41	28.12	43.21	15.66
Merged-chr7-28795971-3	chr7	28795851	28796051	+	961.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177158, exon 8 of 12)	exon (NM_177158, exon 8 of 12)	6982.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	16.56	13.08	10.27	11.66	12.68	11.29	11.96	13.54	16.13	22.09	20.6	11.59
Merged-chr17-34364852-3	chr17	34364736	34364936	+	961.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 6 of 8)	intron (NM_079835, intron 6 of 8)	10014.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	21.0	20.63	33.09	20.11	10.23	14.74	8.3	12.39	26.16	21.09	25.12	14.72
Merged-chr5-134102860-3	chr5	134102770	134102970	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	3122.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	31.5	25.15	13.69	9.25	31.09	51.11	18.6	21.25	45.63	36.65	44.72	20.68
Merged-chr9-108460141-3	chr9	108460048	108460248	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	-370.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	26.25	37.48	40.5	11.26	27.0	41.08	14.28	13.6	50.35	48.2	28.64	13.78
Merged-chr6-17520852-3	chr6	17520759	17520959	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	56902.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	28.67	52.32	40.5	22.93	13.91	39.51	27.24	39.17	21.64	15.06	21.61	10.34
Merged-chr15-84254256-3	chr15	84254140	84254340	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	Tigger17c|DNA|TcMar-Tigger	22197.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	14.54	11.32	21.11	19.31	31.91	9.72	14.95	15.06	18.1	13.05	29.14	20.05
Merged-chr10-121483768-1	chr10	121483668	121483868	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7518.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.42	1.26	0.0	0.8	9.41	3.14	6.64	7.15	5.51	6.53	5.53	7.21
Merged-chr1-55430817-1	chr1	55430717	55430917	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24871.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.83	3.77	3.99	4.02	11.45	10.98	13.62	16.15	1.97	7.53	4.02	4.39
Merged-chr11-83600789-3	chr11	83600687	83600887	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	-7700.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	8.08	9.81	22.25	6.44	25.77	41.71	36.54	39.98	32.45	24.6	39.19	24.43
Merged-chr14-47361911-5	chr14	47361785	47361985	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-11975.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.46	6.54	6.28	10.05	11.45	11.6	11.96	30.81	70.41	49.21	81.9	43.23
Merged-chr17-49423055-3	chr17	49422954	49423154	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5310.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	30.28	26.66	26.24	18.1	33.96	47.04	30.23	34.29	32.65	24.1	18.09	11.28
Merged-chr16-20293990-1	chr16	20293890	20294090	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005767, intron 3 of 9)	intron (NM_001005767, intron 3 of 9)	8372.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	2.42	5.53	0.0	11.66	3.68	0.63	6.31	15.9	0.39	0.0	0.5	0.31
Merged-chr19-32180350-3	chr19	32180258	32180458	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	30655.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	14.54	11.82	13.12	19.31	30.27	23.83	17.94	19.93	19.28	15.57	17.59	15.35
Merged-chr7-135667459-1	chr7	135667359	135667559	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316681, intron 7 of 17)	intron (NM_001316681, intron 7 of 17)	-15145.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.63	1.51	3.42	10.86	6.55	3.14	8.3	15.0	0.98	3.01	2.01	0.94
Merged-chr5-8893715-3	chr5	8893641	8893841	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008830)	promoter-TSS (NM_008830)	20.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	45.63	29.68	12.55	37.81	54.41	32.3	29.56	55.29	34.81	29.62	48.74	17.54
Merged-chr2-128008980-4	chr2	128008930	128009130	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 11 of 17)	intron (NM_028765, intron 11 of 17)	-117008.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	16.56	16.6	15.4	6.44	20.86	24.46	21.92	19.88	18.88	21.59	17.59	20.05
Merged-chr12-78861028-3	chr12	78860944	78861144	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	594.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	10.09	12.07	11.98	12.07	9.41	14.11	6.31	8.38	19.87	9.54	19.6	8.14
Merged-chr10-105273342-2	chr10	105273232	105273432	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 8 of 11)	intron (NM_177368, intron 8 of 11)	301147.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	5.25	0.75	10.27	18.9	6.55	7.21	13.29	26.22	37.37	25.61	48.24	14.72
Merged-chr11-58168450-3	chr11	58168286	58168486	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172558, exon 1 of 28)	exon (NM_172558, exon 1 of 28)	153.0	NM_172558	216766.0	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding	12.52	10.31	17.68	9.65	11.45	18.19	14.95	11.61	14.36	18.08	11.05	10.02
Merged-chr9-53390671-1	chr9	53390571	53390771	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_212445, exon 3 of 8)	exon (NM_212445, exon 3 of 8)	6648.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	2.42	2.26	4.56	1.21	11.86	13.17	1.99	2.61	12.0	3.51	1.51	3.45
Merged-chr11-76458981-3	chr11	76458919	76459119	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	9446.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	19.38	10.31	17.68	11.26	36.41	41.08	21.26	18.64	36.58	33.64	23.62	30.39
Merged-chr11-117783834-3	chr11	117783728	117783928	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195088, exon 4 of 16)	exon (NM_001195088, exon 4 of 16)	1170.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	14.13	7.55	18.25	22.93	29.86	36.37	14.95	32.58	30.49	22.59	27.13	21.93
Merged-chr8-105856252-1	chr8	105856152	105856352	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	1149.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	3.23	0.25	1.14	5.23	1.23	3.14	3.99	2.41	0.2	0.5	3.01	1.88
Merged-chr3-52756402-3	chr3	52756283	52756483	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	16659.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	24.63	21.88	21.11	28.15	7.77	21.95	11.96	14.52	29.31	28.12	44.72	29.76
Merged-chr11-103117251-4	chr11	103117171	103117371	+	960.994019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	946.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	16.15	15.34	13.69	23.73	9.82	7.53	4.98	11.07	9.44	14.06	13.06	10.02
Merged-chr15-64046503-2	chr15	64046406	64046606	+	960.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13258.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.85	5.03	8.56	3.22	14.32	10.66	11.96	11.58	14.75	8.03	12.06	12.22
Merged-chr5-99240760-3	chr5	99240675	99240875	+	960.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	12152.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	10.9	14.84	3.99	4.83	15.96	23.2	6.64	12.31	21.24	22.09	17.59	10.34
Merged-chr4-16213477-3	chr4	16213379	16213579	+	960.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 3 of 6)	Lx8b|LINE|L1	49369.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	20.19	9.06	15.4	20.51	25.36	7.21	17.94	17.55	17.9	13.56	18.59	8.14
Merged-chr4-109665980-4	chr4	109665869	109666069	+	960.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	-597.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	14.13	7.55	5.7	17.7	6.55	10.66	6.98	10.37	10.62	9.04	14.07	11.9
Merged-chr13-34007421-3	chr13	34007316	34007516	+	960.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4542.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	14.94	19.37	8.56	20.91	15.96	18.19	10.3	27.48	29.9	22.09	28.14	23.81
Merged-chr3-149451604-2	chr3	149451503	149451703	+	960.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176866.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	14.13	16.1	11.98	22.52	16.36	31.36	13.62	19.96	0.2	0.5	1.0	0.0
Merged-chr14-16427790-3	chr14	16427672	16427872	+	960.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009409, intron 33 of 35)	intron (NM_009409, intron 33 of 35)	62566.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	22.21	19.62	32.52	36.6	18.0	11.92	30.89	33.87	24.19	13.05	41.2	23.81
Merged-chr2-128771235-3	chr2	128771128	128771328	+	960.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47075.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.52	8.8	18.25	9.25	22.09	24.15	27.57	29.58	24.78	21.09	18.09	17.54
Merged-chr12-111592634-3	chr12	111592530	111592730	+	960.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022801, exon 2 of 16)	exon (NM_022801, exon 2 of 16)	18120.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	23.82	24.4	18.25	8.45	20.05	26.34	9.3	12.25	13.18	23.6	11.56	3.45
Merged-chr10-86779791-3	chr10	86779685	86779885	+	960.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	780.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	14.54	10.31	11.41	12.47	17.59	13.17	21.26	17.22	10.23	20.08	24.12	16.29
Merged-chr10-24151480-3	chr10	24151400	24151600	+	960.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	2183.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	21.4	14.09	17.68	11.66	13.5	17.56	9.97	15.87	25.77	12.05	22.11	15.35
Merged-chr16-50482519-3	chr16	50482435	50482635	+	960.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-43710.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	26.25	20.12	18.25	9.25	16.36	37.63	26.91	28.63	17.31	28.62	17.08	5.01
Merged-chr1-171247683-2	chr1	171247585	171247785	+	960.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-563.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	10.5	15.85	21.11	9.65	18.82	20.7	9.3	10.4	18.29	11.55	10.05	14.72
Merged-chr15-11765114-2	chr15	11765024	11765224	+	960.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	140550.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	6.06	2.01	9.7	14.08	9.0	20.7	38.53	22.65	22.23	19.08	50.25	22.56
Merged-chr12-3356992-3	chr12	3356883	3357083	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8149.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	13.33	25.15	19.97	5.63	28.23	43.9	18.6	14.94	32.26	41.17	54.27	13.16
Merged-chr3-8982592-3	chr3	8982507	8982707	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-18461.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	16.56	13.83	16.54	17.7	28.23	16.31	17.61	29.92	14.16	10.04	22.61	15.04
Merged-chr11-20831069-6	chr11	20830999	20831199	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	9.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	6.86	8.3	11.98	4.42	22.09	16.31	9.97	14.07	17.7	18.08	17.59	16.92
Merged-chr7-30600145-3	chr7	30600025	30600225	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1216.0	NR_153655	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	39.98	20.12	24.53	26.14	34.36	40.76	39.2	56.47	17.7	10.04	23.11	8.46
Merged-chr14-55685978-3	chr14	55685886	55686086	+	960.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4169.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	8.48	12.32	29.09	25.74	13.09	25.4	24.91	35.16	23.6	20.08	48.74	29.76
Merged-chr10-25279511-3	chr10	25279386	25279586	+	960.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19677.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	14.13	8.3	19.4	42.23	22.91	17.25	28.9	35.24	19.08	16.07	34.17	26.31
Merged-chr1-138939859-2	chr1	138939751	138939951	+	960.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-23858.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	1.26	0.0	3.62	13.09	34.18	8.97	18.08	53.3	21.59	24.62	18.17
Merged-chr12-17741723-3	chr12	17741629	17741829	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	50920.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	14.94	7.04	22.25	18.5	24.14	18.81	24.91	26.1	21.05	17.07	22.11	11.59
Merged-chr18-5162221-3	chr18	5162125	5162325	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153824)	TTS (NR_153824)	3506.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	21.4	13.58	14.83	14.08	23.73	22.89	17.61	21.34	14.55	11.05	21.61	16.29
Merged-chr1-165617377-3	chr1	165617274	165617474	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17167.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	19.79	10.82	29.66	34.59	46.64	19.44	47.17	55.35	42.88	35.15	72.36	35.09
Merged-chr19-40663267-3	chr19	40663177	40663377	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	3507.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	14.13	10.31	6.28	13.27	18.82	18.5	18.27	18.11	15.34	15.06	26.13	11.28
Merged-chr2-73567214-3	chr2	73567103	73567303	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007389, intron 7 of 8)	intron (NM_007389, intron 7 of 8)	13135.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	14.13	12.07	11.98	13.67	11.05	12.86	9.63	11.33	16.13	20.59	20.6	14.72
Merged-chr13-37322965-3	chr13	37322870	37323070	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22375.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	13.73	23.14	7.99	14.48	14.73	21.01	13.95	10.74	20.46	27.11	22.11	14.41
Merged-chr4-119635476-3	chr4	119635285	119635485	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2347.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	3.63	7.29	9.13	7.24	10.64	9.09	8.64	7.26	12.19	8.54	19.09	7.52
Merged-chr11-117087172-3	chr11	117087071	117087271	+	960.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9823.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	10.9	8.05	13.12	21.32	26.18	24.15	17.27	32.05	29.5	19.58	22.61	17.86
Merged-chrX-74305030-2	chrX	74304925	74305125	+	960.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010273)	promoter-TSS (NM_010273)	13.0	NM_010273	14567.0	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	6.86	9.81	5.7	7.64	10.64	12.86	10.96	9.9	14.55	14.56	21.1	12.84
Merged-chr8-40495852-2	chr8	40495756	40495956	+	960.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011135, exon 6 of 7)	exon (NM_011135, exon 6 of 7)	14623.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	9.69	12.32	30.8	22.12	31.91	22.26	16.94	30.48	12.0	4.52	7.03	4.7
Merged-chr7-101840101-3	chr7	101839994	101840194	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001303239, exon 6 of 6)	3' UTR (NM_001303239, exon 6 of 6)	-1868.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	28.27	9.31	17.68	17.7	21.68	18.81	17.61	20.66	24.39	14.06	31.15	19.42
Merged-chr7-117487055-3	chr7	117486958	117487158	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	MIR|SINE|MIR	106079.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	16.15	9.56	20.54	15.28	18.41	21.32	27.9	22.63	17.51	13.56	20.6	14.72
Merged-chr2-156258653-3	chr2	156258545	156258745	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-53828.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	27.05	18.86	27.38	14.88	28.23	36.37	17.61	29.47	27.34	18.08	16.08	18.48
Merged-chr16-16554562-3	chr16	16554461	16554661	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	5658.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	19.79	5.79	19.4	26.95	27.0	15.05	21.59	44.13	12.78	18.08	34.67	22.56
Merged-chr2-14272270-3	chr2	14272167	14272367	+	960.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 9 of 29)	intron (NM_008625, intron 9 of 29)	11264.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	14.94	9.56	8.56	21.72	24.96	13.48	25.58	36.5	19.08	26.11	22.61	7.83
Merged-chr10-58529482-3	chr10	58529364	58529564	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 10 of 15)	MTD|LTR|ERVL-MaLR	31527.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	23.02	13.83	14.26	5.23	9.0	17.56	4.98	11.61	33.44	22.09	27.64	13.78
Merged-chr4-147125063-3	chr4	147124958	147125158	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-50808.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	8.48	13.08	13.12	24.53	18.0	12.86	30.56	17.41	15.54	28.62	26.13	11.9
Merged-chr5-43879580-3	chr5	43879446	43879646	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	10737.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.27	5.03	24.53	5.63	19.23	9.72	12.29	9.81	20.26	21.09	25.63	12.22
Merged-chr2-77946475-3	chr2	77946374	77946574	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290740)	promoter-TSS (NM_001290740)	-118.0	NM_030560	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	11.31	16.35	14.83	6.84	16.36	11.6	21.59	11.92	26.55	19.58	41.71	15.66
Merged-chr16-14132042-3	chr16	14131934	14132134	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 15 of 26)	intron (NM_001081154, intron 15 of 26)	27240.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	15.34	17.86	50.77	18.9	43.36	19.44	25.91	35.27	22.23	13.56	23.11	15.66
Merged-chr14-103777584-1	chr14	103777484	103777684	+	960.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66117.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.65	7.04	6.85	18.5	15.96	11.92	9.97	21.73	4.92	5.52	13.57	5.01
Merged-chr18-9484688-3	chr18	9484584	9484784	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-34530.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.06	9.31	8.56	16.49	11.45	9.72	27.24	20.24	27.34	8.54	26.13	13.16
Merged-chr8-22498138-1	chr8	22498038	22498238	+	960.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-21259.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.0	0.25	2.28	0.0	1.64	0.0	0.66	1.54	25.96	17.07	8.04	10.96
Merged-chr15-82126850-3	chr15	82126750	82126950	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310435)	TTS (NM_001310435)	-1072.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	18.17	10.06	30.8	29.36	19.23	12.86	9.97	28.49	38.16	32.13	65.83	29.76
Merged-chr10-7834516-3	chr10	7834397	7834597	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1884.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	41.59	37.98	41.07	29.76	22.09	42.33	19.27	36.2	19.47	8.54	27.64	10.02
Merged-chr17-27585074-2	chr17	27584979	27585179	+	960.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	RLTR20A2B_MM|LTR|ERVK	-19352.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	38.36	36.72	34.8	44.24	0.0	0.31	0.66	0.03	24.59	13.05	18.09	6.58
Merged-chr2-153779135-2	chr2	153779032	153779232	+	960.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1747.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	9.69	5.28	10.27	4.42	19.64	18.19	9.3	11.8	25.18	14.56	21.1	17.23
Merged-chr7-63929317-3	chr7	63929169	63929369	+	960.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	9646.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	19.38	12.58	11.41	11.66	8.18	12.23	7.64	12.64	20.65	17.57	27.13	11.9
Merged-chr7-34133314-3	chr7	34133214	34133414	+	960.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207212)	promoter-TSS (NM_207212)	-46.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	10.5	18.36	17.11	20.11	24.14	14.74	23.25	29.86	21.83	25.61	32.66	8.46
Merged-chr8-128166354-3	chr8	128166251	128166451	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111874.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	17.36	9.81	34.23	22.52	17.18	15.68	16.28	31.54	27.54	16.57	41.2	19.11
Merged-chr5-135677418-3	chr5	135677288	135677488	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-11757.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	8.88	13.58	10.84	19.31	16.36	13.48	10.63	12.5	13.57	23.6	28.64	16.92
Merged-chr11-43410478-3	chr11	43410382	43410582	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15499.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	15.34	12.83	22.25	16.49	12.68	13.8	7.64	10.32	35.21	23.6	26.63	15.04
Merged-chr12-54999201-3	chr12	54999121	54999321	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12885.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	39.98	27.17	16.54	44.64	35.18	34.49	21.59	42.28	41.89	36.15	34.67	24.43
Merged-chr2-130729486-3	chr2	130729381	130729581	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31962.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	31.5	9.81	25.1	30.57	48.68	40.76	33.22	46.43	34.03	17.07	36.18	37.59
Merged-chr18-23808981-3	chr18	23808885	23809085	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	5015.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	16.96	14.34	31.38	20.91	14.73	16.62	11.63	10.63	19.47	8.03	16.08	13.78
Merged-chr13-107101767-3	chr13	107101671	107101871	+	960.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79201.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	23.42	18.36	19.97	19.31	19.23	31.36	17.27	21.59	40.12	35.15	54.27	8.77
Merged-chr5-21054799-3	chr5	21054656	21054856	+	960.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	1155.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	17.77	6.79	11.41	12.87	10.23	11.92	20.93	17.07	13.18	26.11	16.08	15.98
Merged-chr16-84585165-2	chr16	84585070	84585270	+	960.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94619.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	12.11	16.35	8.56	14.48	4.91	13.8	2.33	3.53	39.73	18.58	18.59	9.4
Merged-chr3-152479110-3	chr3	152478985	152479185	+	960.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82401.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	12.52	6.29	12.55	11.66	11.05	17.25	17.94	46.71	13.77	12.55	17.59	9.4
Merged-chr7-122356685-3	chr7	122356610	122356810	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	L1MB2|LINE|L1	67585.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	21.0	7.55	18.25	20.11	20.05	23.2	21.59	35.5	18.49	13.05	25.12	10.34
Merged-chr11-115491766-3	chr11	115491638	115491838	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015807)	promoter-TSS (NM_015807)	76.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	14.13	12.32	10.27	3.62	11.86	16.31	8.64	13.63	18.88	13.05	22.11	8.14
Merged-chr18-70645005-3	chr18	70644894	70645094	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	76702.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	19.38	14.84	20.54	21.32	30.68	12.54	7.64	21.03	18.49	23.6	24.62	13.47
Merged-chr16-24595863-3	chr16	24595753	24595953	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	66539.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	55.32	65.4	29.66	3.62	46.64	111.95	31.56	12.45	90.67	54.73	40.2	11.9
Merged-chr5-121845904-3	chr5	121845793	121845993	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3104.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	14.94	11.82	10.84	11.66	20.86	30.73	12.62	20.83	18.88	13.05	22.61	13.16
Merged-chr15-61998989-3	chr15	61998887	61999087	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13646.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	26.25	18.86	26.81	10.05	30.27	39.82	39.2	45.34	26.55	48.7	19.6	28.51
Merged-chr12-99999650-3	chr12	99999544	99999744	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	ORR1C1|LTR|ERVL-MaLR	35145.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	12.92	9.81	30.8	16.49	40.5	40.76	23.25	30.06	22.42	21.59	31.15	13.16
Merged-chr1-80614320-3	chr1	80614197	80614397	+	960.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	RLTR20A4|LTR|ERVK	51055.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	32.3	23.39	18.83	26.14	25.77	16.31	16.28	22.91	21.64	11.05	32.16	9.4
Merged-chr17-29318778-1	chr17	29318678	29318878	+	960.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023734)	promoter-TSS (NM_023734)	-104.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	4.44	7.55	5.7	4.02	19.23	13.8	6.64	16.07	4.13	7.03	6.53	9.71
Merged-chr13-5863183-1	chr13	5863083	5863283	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	1694.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.48	11.32	6.28	10.46	11.45	16.31	2.99	7.29	18.1	20.59	13.06	8.14
Merged-chr6-32395576-3	chr6	32395479	32395679	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115562.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	13.33	19.87	43.35	40.22	31.91	53.62	42.19	56.86	35.99	27.62	48.74	33.83
Merged-chr13-81136172-3	chr13	81136068	81136268	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172094.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	17.77	11.57	13.69	9.65	13.91	23.52	17.61	19.04	21.83	28.62	21.1	16.6
Merged-chr8-120535172-3	chr8	120535074	120535274	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145897)	promoter-TSS (NM_001145897)	-683.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	10.9	15.09	26.24	8.85	18.41	18.5	15.28	14.69	28.52	23.1	36.18	11.9
Merged-chr12-34682815-1	chr12	34682715	34682915	+	960.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	Lx8b|LINE|L1	-153926.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.83	4.28	5.7	3.22	12.27	16.62	7.97	11.47	4.13	3.51	6.03	3.76
Merged-chr3-15284628-3	chr3	15284531	15284731	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47671.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	14.13	16.35	15.97	33.38	31.09	25.71	21.26	23.05	28.13	28.62	28.64	13.16
Merged-chr11-74638136-3	chr11	74638025	74638225	+	960.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11370.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	23.02	19.87	9.13	17.7	23.73	18.19	13.62	17.55	20.26	19.58	16.08	12.53
Merged-chr2-60852076-3	chr2	60851993	60852193	+	960.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	29345.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	18.57	16.6	34.23	10.86	26.18	16.62	17.61	30.45	33.44	31.63	54.77	12.22
Merged-chr13-16912438-3	chr13	16912328	16912528	+	960.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138654, intron 13 of 13)	intron (NM_138654, intron 13 of 13)	782337.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	23.02	29.43	57.62	42.23	20.86	11.29	21.59	23.75	42.88	13.56	46.73	19.42
Merged-chr4-132010619-3	chr4	132010528	132010728	+	960.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	38450.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	12.52	10.31	15.4	12.07	26.59	28.22	15.61	25.85	16.33	17.57	29.14	16.29
Merged-chr17-5429562-3	chr17	5429473	5429673	+	960.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	10687.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	21.8	15.09	13.12	9.65	21.27	23.2	10.96	12.39	20.85	17.57	22.11	13.78
Merged-chr1-36962441-5	chr1	36962363	36962563	+	960.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22936.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	15.75	13.08	11.41	7.64	6.14	5.33	9.97	12.48	16.92	25.11	23.11	11.9
Merged-chr5-138085096-3	chr5	138084991	138085191	+	960.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029869)	promoter-TSS (NM_029869)	7.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	40.78	26.41	25.67	13.27	27.41	30.42	17.27	13.93	38.94	21.09	30.15	19.42
Merged-chr4-99208635-3	chr4	99208537	99208737	+	960.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	RLTR49|LTR|ERVK	14490.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	17.36	21.63	25.1	17.29	14.32	24.15	16.94	6.39	49.57	49.71	69.85	25.06
Merged-chr5-43102777-3	chr5	43102679	43102879	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130684.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	20.19	13.08	21.11	22.52	37.64	28.22	19.6	46.96	25.37	25.11	30.65	10.02
Merged-chr8-60954820-3	chr8	60954723	60954923	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173876)	promoter-TSS (NM_173876)	-24.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	17.36	18.36	6.28	13.67	18.0	26.34	6.31	25.82	24.59	19.58	37.18	6.27
Merged-chr6-108442521-3	chr6	108442419	108442619	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-47224.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	11.31	5.03	3.42	16.49	27.0	18.19	27.9	32.92	20.46	16.07	23.11	11.9
Merged-chr2-130179357-3	chr2	130179246	130179446	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	18.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	15.75	18.61	12.55	12.07	18.41	24.15	11.63	10.46	26.16	20.59	16.08	16.29
Merged-chr15-10876023-2	chr15	10875912	10876112	+	960.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	46961.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	7.67	10.06	2.85	1.61	5.73	14.42	9.63	7.82	5.7	15.57	17.59	8.46
Merged-chr4-70546079-2	chr4	70545985	70546185	+	960.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-11157.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	10.9	3.52	7.42	18.9	12.27	12.23	12.62	20.27	16.72	15.57	24.12	11.9
Merged-chr19-24166646-2	chr19	24166536	24166736	+	960.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	7553.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	62.18	46.78	25.67	49.87	2.05	4.08	0.66	2.75	16.33	12.55	24.12	20.05
Merged-chr16-93833772-2	chr16	93833680	93833880	+	960.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1659.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.06	4.02	3.42	5.63	15.14	14.74	3.65	8.16	22.23	11.55	23.11	15.35
Merged-chr5-118645380-1	chr5	118645280	118645480	+	960.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	84661.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.25	1.71	0.8	0.41	1.25	0.66	0.0	11.8	6.03	21.1	13.47
Merged-chr15-34238654-3	chr15	34238544	34238744	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033521, intron 1 of 6)	CpG	618.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	11.31	17.61	33.09	16.49	21.27	15.37	23.25	20.75	18.29	23.6	14.07	13.16
Merged-chr10-128298967-3	chr10	128298860	128299060	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-876.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	38.36	39.99	15.4	9.65	42.96	62.09	18.93	23.89	81.04	94.9	46.73	30.7
Merged-chr12-55368619-3	chr12	55368530	55368730	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-15592.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	26.65	10.56	27.95	16.09	29.86	38.26	37.54	23.97	38.94	24.6	54.77	22.24
Merged-chr2-126996935-3	chr2	126996807	126997007	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11804.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	19.79	10.82	14.26	9.65	23.32	19.76	14.28	11.16	26.95	17.07	19.09	3.45
Merged-chr11-121722682-3	chr11	121722561	121722761	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20234.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	13.33	11.07	7.99	5.63	6.14	22.58	11.29	10.09	18.29	28.12	32.66	10.96
Merged-chr17-79482150-1	chr17	79482050	79482250	+	960.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-4265.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	1.21	0.0	0.57	0.8	1.64	0.63	1.99	0.14	19.47	5.52	20.6	9.71
Merged-chr14-32184289-3	chr14	32184219	32184419	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016897, intron 6 of 6)	intron (NM_016897, intron 6 of 6)	17572.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	16.56	13.33	18.25	7.64	16.36	24.15	16.94	14.58	18.49	10.54	19.6	8.77
Merged-chr11-107405820-3	chr11	107405734	107405934	+	960.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	RSINE1|SINE|B4	64886.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	17.36	10.56	26.81	34.59	37.64	13.8	35.54	51.76	24.19	14.06	34.67	29.45
Merged-chr12-85604540-3	chr12	85604428	85604628	+	960.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4510.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	19.79	5.28	12.55	18.1	11.05	6.9	10.3	17.07	15.34	17.07	18.09	12.84
Merged-chr1-84864836-3	chr1	84864740	84864940	+	960.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025386, intron 1 of 3)	ID_B1|SINE|B4	24999.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	4.44	12.83	14.83	15.28	18.0	12.86	7.31	12.14	19.28	22.59	22.61	10.34
Merged-chr13-75791016-2	chr13	75790922	75791122	+	960.283325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48863.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.67	5.28	10.27	14.48	18.41	10.03	13.95	14.22	19.47	19.58	25.12	10.02
Merged-chr17-28698329-3	chr17	28698238	28698438	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	5770.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	14.13	13.08	22.25	14.08	20.46	29.16	9.3	10.35	26.75	17.07	21.61	10.02
Merged-chr14-57264168-3	chr14	57264051	57264251	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130540.0	NM_001010937	14623.0	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	22.21	34.21	28.52	25.74	10.23	16.31	13.95	19.88	20.26	8.54	20.1	17.54
Merged-chr9-108827120-3	chr9	108827006	108827206	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1061.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	18.98	13.58	10.27	14.48	16.77	25.09	10.3	21.81	24.39	37.16	34.67	30.7
Merged-chr11-83223486-3	chr11	83223380	83223580	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015519)	promoter-TSS (NR_015519)	-96.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	24.63	22.39	25.67	24.53	14.32	17.87	6.98	22.29	39.53	27.62	31.15	20.68
Merged-chr5-120558983-3	chr5	120558883	120559083	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145853, intron 3 of 27)	intron (NM_145853, intron 3 of 27)	29630.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	14.54	14.34	14.83	11.66	20.46	18.19	21.59	18.17	13.77	30.63	21.1	18.48
Merged-chr2-124627904-3	chr2	124627799	124627999	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	B4A|SINE|B4	17603.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	11.31	11.57	26.81	16.09	27.41	22.89	23.25	33.53	37.17	33.64	22.11	8.46
Merged-chr11-53898394-3	chr11	53898306	53898506	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-6703.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	21.0	11.57	11.41	20.91	26.59	23.83	12.29	16.57	27.34	23.6	23.62	12.53
Merged-chr14-54474785-2	chr14	54474682	54474882	+	960.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1318.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	14.54	12.32	11.98	20.91	13.91	15.37	7.64	15.08	0.2	1.0	0.0	1.88
Merged-chr8-80943966-2	chr8	80943864	80944064	+	960.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-63445.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	8.08	4.02	8.56	5.23	23.32	13.17	20.93	14.94	7.08	18.58	23.62	7.83
Merged-chr19-14585479-3	chr19	14585381	14585581	+	960.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	11732.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	20.19	12.32	21.68	27.35	9.41	16.31	13.29	17.61	24.19	18.58	32.66	14.41
Merged-chr9-40414578-3	chr9	40414480	40414680	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	RLTR16C_MM|LTR|ERVK	-38163.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	18.17	18.36	16.54	7.24	17.18	23.83	12.29	14.83	22.82	17.07	33.67	14.1
Merged-chr13-95890313-3	chr13	95890217	95890417	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	1605.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	9.29	16.6	6.85	17.29	30.68	39.51	24.25	34.77	33.83	55.73	52.76	23.18
Merged-chr10-121587597-3	chr10	121587504	121587704	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-810.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	17.77	19.12	5.7	3.62	22.5	31.67	8.97	9.64	26.16	18.58	24.12	10.65
Merged-chr18-82530297-3	chr18	82530195	82530395	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24168.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	14.13	20.88	41.07	34.19	13.91	12.86	10.96	17.58	15.14	20.08	26.63	13.16
Merged-chr6-135252684-4	chr6	135252607	135252807	+	960.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1629.0	NM_010352	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	14.94	6.54	18.25	13.27	44.59	20.7	30.56	42.76	5.9	9.04	15.58	6.58
Merged-chr10-108163005-5	chr10	108162856	108163056	+	960.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	556.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	9.69	10.82	5.13	6.03	7.36	7.21	10.3	9.03	11.21	13.56	11.56	19.42
Merged-chr19-47937634-3	chr19	47937530	47937730	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-82.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	31.9	21.88	15.4	26.14	21.68	26.65	6.31	19.96	35.6	16.07	26.13	19.74
Merged-chr13-17977043-3	chr13	17976936	17977136	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16315.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	19.38	21.13	20.54	13.67	30.27	23.83	17.94	24.0	24.78	9.04	24.12	24.75
Merged-chrX-94212908-6	chrX	94212819	94213019	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012010)	promoter-TSS (NM_012010)	-268.0	NM_012010	26905.0	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	8.88	9.81	14.26	3.62	15.96	11.92	8.64	9.08	26.55	39.16	20.6	23.18
Merged-chr11-114542326-1	chr11	114542226	114542426	+	960.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93466.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	0.81	1.26	0.0	0.0	2.86	0.0	3.32	0.64	19.28	14.56	19.09	14.72
Merged-chr1-135131223-3	chr1	135131110	135131310	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153383, intron 1 of 36)	intron (NR_153383, intron 1 of 36)	1365.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	15.75	9.81	12.55	15.28	20.46	14.42	19.27	17.64	21.44	24.6	26.63	10.96
Merged-chr7-24481933-3	chr7	24481835	24482035	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-88.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	20.59	15.09	11.98	27.75	26.18	34.18	11.96	15.64	22.03	19.08	20.1	12.22
Merged-chr7-16043644-3	chr7	16043549	16043749	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28196.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	18.17	19.12	27.95	28.96	24.96	14.74	21.92	20.27	20.06	19.08	34.67	9.71
Merged-chr12-40310101-2	chr12	40309995	40310195	+	960.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	86731.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	18.98	6.04	18.25	14.08	17.18	15.68	23.58	9.59	5.31	12.55	9.04	5.01
Merged-chr3-75556296-3	chr3	75556202	75556402	+	960.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	550.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	9.69	21.63	30.8	19.31	25.77	15.68	16.28	25.74	30.88	26.11	29.65	16.92
Merged-chr6-116756554-3	chr6	116756459	116756659	+	960.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39801.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	19.38	11.57	23.96	14.08	32.32	41.08	32.88	27.64	22.03	16.07	32.66	19.74
Merged-chr6-66973291-3	chr6	66973201	66973401	+	960.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-63298.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	18.17	11.82	18.83	20.51	17.59	20.7	24.91	32.38	20.65	11.05	47.74	13.47
Merged-chr19-6340116-3	chr19	6340025	6340225	+	960.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001168488, exon 10 of 10)	exon (NM_001168488, exon 10 of 10)	-1035.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	18.57	17.86	27.38	10.05	13.09	21.32	18.27	10.29	32.06	21.09	26.13	11.59
Merged-chr3-130794996-3	chr3	130794883	130795083	+	960.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64585.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	12.52	12.83	26.81	16.09	17.59	10.35	21.59	22.07	15.14	8.54	21.61	13.78
Merged-chr7-28168852-3	chr7	28168742	28168942	+	960.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007991)	promoter-TSS (NM_007991)	-906.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	13.33	11.07	17.11	11.26	9.82	10.98	6.31	9.62	17.31	15.57	19.09	17.23
Merged-chr6-7693131-2	chr6	7693032	7693232	+	960.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012055)	promoter-TSS (NM_012055)	50.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	20.59	45.02	23.39	37.4	9.82	7.84	9.97	10.01	2.95	4.02	2.01	4.39
Merged-chr11-59518410-2	chr11	59518323	59518523	+	960.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11783.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.75	1.14	0.0	14.73	16.93	10.3	20.13	29.31	12.05	21.1	21.3
Merged-chr11-75733394-3	chr11	75733362	75733562	+	960.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009536, intron 1 of 5)	CpG	575.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	23.02	21.38	15.97	10.05	11.86	22.26	17.94	17.75	20.26	23.1	11.56	10.65
Merged-chr1-138963603-5	chr1	138963522	138963722	+	960.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166501)	promoter-TSS (NM_001166501)	-87.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	28.67	20.12	14.26	24.13	36.0	26.03	19.27	26.69	25.37	29.12	15.07	13.16
Merged-chr1-187216876-3	chr1	187216785	187216985	+	960.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357645, intron 1 of 9)	intron (NM_001357645, intron 1 of 9)	1142.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	22.61	8.55	10.84	19.71	23.32	14.42	11.63	24.03	22.03	15.57	27.64	6.89
Merged-chr19-47755135-3	chr19	47755017	47755217	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	40.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	28.67	36.22	38.79	22.93	27.0	38.88	17.27	28.85	21.24	9.04	17.59	7.83
Merged-chr3-90077605-3	chr3	90077496	90077696	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	-1925.0	NM_001253738	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	13.73	7.04	20.54	13.27	28.64	22.58	12.95	14.52	21.44	24.6	18.09	14.1
Merged-chr18-69576549-3	chr18	69576450	69576650	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	230390.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	16.56	18.86	12.55	20.11	17.59	14.74	10.3	15.95	13.96	12.55	11.56	10.96
Merged-chr13-58478100-3	chr13	58478001	58478201	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-74758.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	13.33	9.31	19.97	30.16	20.86	15.99	9.63	34.21	18.69	21.59	40.7	7.52
Merged-chr6-124957515-3	chr6	124957415	124957615	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164089)	TTS (NM_001164089)	8023.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	23.42	20.12	17.11	16.09	29.05	16.93	12.29	9.03	27.14	17.07	19.6	17.23
Merged-chr7-102223084-3	chr7	102223008	102223208	+	960.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	80.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	18.98	17.61	11.41	18.5	15.55	17.56	15.94	10.82	16.13	20.59	21.1	7.52
Merged-chr10-62530425-3	chr10	62530323	62530523	+	960.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2978.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	11.71	4.53	18.25	29.76	33.14	13.48	48.83	62.44	14.36	9.04	24.12	19.11
Merged-chr6-86660746-2	chr6	86660633	86660833	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	8426.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	1.62	3.77	3.99	7.64	13.5	15.99	10.96	25.82	18.29	22.59	29.14	20.68
Merged-chr10-117724499-1	chr10	117724399	117724599	+	960.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13741.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	8.08	5.28	4.56	4.02	3.68	14.11	5.31	2.97	18.29	20.08	14.07	7.21
Merged-chr4-126023825-2	chr4	126023769	126023969	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	-790.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	4.44	2.01	2.28	3.62	5.32	4.7	0.66	6.7	21.44	23.1	20.6	16.92
Merged-chr13-89376282-1	chr13	89376182	89376382	+	960.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-164354.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.23	3.52	6.85	6.44	4.91	1.25	2.33	4.37	18.88	15.06	10.55	6.27
Merged-chr18-34857842-1	chr18	34857742	34857942	+	960.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3365.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.25	3.27	7.42	1.21	2.86	6.27	3.32	1.91	15.74	4.52	12.06	10.65
Merged-chr3-69157745-3	chr3	69157645	69157845	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126533)	TTS (NR_126533)	26512.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	15.34	9.81	43.93	47.46	20.05	24.77	73.08	72.5	38.55	9.54	54.27	30.07
Merged-chr16-92715653-3	chr16	92715537	92715737	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18308.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	11.31	11.57	9.13	16.49	26.18	25.09	15.28	30.11	23.21	18.58	21.61	26.0
Merged-chr11-116618553-1	chr11	116618453	116618653	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	5699.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	1.62	3.52	3.99	0.0	10.64	3.45	3.65	9.9	7.47	7.03	6.53	5.01
Merged-chr18-66519399-2	chr18	66519312	66519512	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15234.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	4.44	9.06	5.13	2.01	11.45	14.11	7.97	11.21	23.01	5.52	20.6	12.22
Merged-chr7-126739683-3	chr7	126739559	126739759	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19967.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	11.31	10.31	10.84	6.84	31.5	35.43	25.24	22.71	35.21	36.65	30.65	24.12
Merged-chr7-142068787-1	chr7	142068687	142068887	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7753.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	7.27	6.29	9.7	7.24	3.68	3.14	7.97	9.2	3.15	4.52	4.02	7.21
Merged-chr7-100121083-3	chr7	100121021	100121221	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133692, intron 1 of 11)	CpG	379.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	9.69	14.84	16.54	16.49	15.55	18.81	16.94	8.55	22.03	8.03	10.55	24.75
Merged-chr12-25437714-1	chr12	25437614	25437814	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	308540.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.23	6.04	5.13	4.42	4.5	3.76	6.98	8.44	3.74	2.51	5.53	2.82
Merged-chrX-13503220-1	chrX	13503120	13503320	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35548.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	0.81	2.26	1.14	2.41	8.59	4.39	3.65	7.93	4.72	6.03	3.52	6.58
Merged-chr10-13469173-1	chr10	13469073	13469273	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	5223.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.81	4.53	5.13	2.41	4.09	2.51	2.99	4.32	1.57	1.51	0.5	1.88
Merged-chr10-93945569-3	chr10	93945469	93945669	+	959.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18294.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	14.94	8.8	14.83	16.89	20.05	7.53	18.27	13.35	47.8	27.11	31.15	26.31
Merged-chr2-128065756-3	chr2	128065663	128065863	+	959.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 14 of 17)	RLTR16|LTR|ERVK	-60275.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	29.07	7.29	23.96	14.88	13.5	18.19	9.3	16.09	30.49	20.08	23.62	13.16
Merged-chr17-57219376-3	chr17	57219265	57219465	+	959.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009778, intron 19 of 40)	B3A|SINE|B2	-2137.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	22.61	15.09	9.7	2.82	14.73	26.97	7.97	8.5	23.8	15.57	23.62	10.34
Merged-chr5-16538202-3	chr5	16538123	16538323	+	959.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15272.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	19.79	12.83	21.11	10.86	27.82	34.49	45.84	27.08	25.57	13.05	30.65	17.54
Merged-chr18-89607628-3	chr18	89607531	89607731	+	959.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039173, intron 1 of 7)	B4A|SINE|B4	161505.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	23.02	17.36	37.08	44.64	18.82	16.93	14.95	27.95	14.55	12.05	54.77	14.41
Merged-chr16-90323120-3	chr16	90323018	90323218	+	959.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38615.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	19.79	13.08	17.68	13.67	11.05	18.81	11.29	16.18	14.16	20.59	20.6	10.65
Merged-chr9-50775343-3	chr9	50775254	50775454	+	959.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045601, exon 1 of 14)	non-coding (NR_045601, exon 1 of 14)	129.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	14.54	18.86	14.26	20.11	12.27	18.19	14.62	14.3	16.72	17.57	12.56	13.47
Merged-chr13-92977633-2	chr13	92977542	92977742	+	959.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20D|LTR|ERVK	-95662.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	7.67	11.82	17.68	22.12	0.0	0.0	0.0	0.84	36.19	39.67	75.37	35.4
Merged-chr11-8567342-3	chr11	8567237	8567437	+	959.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97198.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	31.5	24.9	42.21	20.51	16.36	42.96	21.26	20.1	43.27	42.18	32.66	10.02
Merged-chr1-91096671-3	chr1	91096557	91096757	+	959.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	43213.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	44.42	31.19	42.78	22.52	11.45	28.54	29.23	26.78	23.6	12.05	33.67	18.8
Merged-chr2-19344699-3	chr2	19344553	19344753	+	959.849182	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126563, exon 1 of 4)	non-coding (NR_126563, exon 1 of 4)	336.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	11.71	12.07	11.98	16.89	16.77	11.29	15.28	7.12	11.21	11.05	15.07	17.23
Merged-chr17-34171346-2	chr17	34171241	34171441	+	959.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15989.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	28.27	28.17	33.09	28.56	11.45	12.54	1.99	8.97	7.47	10.54	3.01	7.21
Merged-chr7-34176458-2	chr7	34176354	34176554	+	959.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7925.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	19.38	9.56	4.56	16.89	15.55	24.15	15.94	5.33	8.26	7.53	4.02	4.7
Merged-chr5-124026625-3	chr5	124026523	124026723	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	5637.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	21.0	20.63	12.55	5.23	21.27	31.67	12.29	14.1	47.21	35.15	17.08	14.72
Merged-chr3-31100204-3	chr3	31100098	31100298	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5140.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	15.34	13.08	2.28	8.04	12.27	42.02	10.3	12.06	27.93	21.59	28.14	17.23
Merged-chr3-41552973-1	chr3	41552873	41553073	+	959.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NM_001130184	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	8.48	5.79	5.7	2.01	12.68	9.09	9.3	16.71	4.33	6.03	9.04	5.95
Merged-chr5-92487467-3	chr5	92487356	92487556	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	18201.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	23.02	11.57	27.38	19.31	16.36	11.29	16.94	32.27	26.75	21.59	28.14	22.56
Merged-chr19-37206904-4	chr19	37206836	37207036	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164337)	promoter-TSS (NM_001164337)	535.0	NM_198300	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	8.48	12.07	9.13	7.64	3.27	10.66	6.31	10.74	11.6	9.54	7.03	14.72
Merged-chr7-30282940-3	chr7	30282803	30283003	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_144498, intron 2 of 2)	RMER19B|LTR|ERVK	-2482.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	46.84	58.61	66.74	57.92	72.82	85.61	50.16	50.3	14.55	9.54	16.58	17.54
Merged-chr16-17410426-3	chr16	17410313	17410513	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-4099.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	22.61	18.86	15.4	25.34	29.46	33.87	32.55	39.31	17.11	23.1	25.12	14.41
Merged-chr13-21735007-3	chr13	21734920	21735120	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-14.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	12.52	10.82	7.42	14.08	12.27	11.29	2.33	7.65	16.92	15.57	17.59	11.9
Merged-chr6-38913115-3	chr6	38913005	38913205	+	959.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5881.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	13.33	10.56	21.68	24.53	34.77	11.6	31.22	50.52	19.67	9.54	23.11	20.36
Merged-chr7-7210028-3	chr7	7209922	7210122	+	959.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	-24.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	19.79	16.1	22.82	24.13	23.32	21.95	15.28	13.29	32.85	21.59	35.17	13.16
Merged-chr14-103342030-3	chr14	103341918	103342118	+	959.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	4782.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	11.71	13.83	12.55	12.07	6.55	10.03	13.29	13.07	7.67	17.07	12.56	10.65
Merged-chr14-52020693-3	chr14	52020591	52020791	+	959.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	42.0	NM_001253696	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	24.63	17.61	19.97	10.05	22.5	21.64	11.29	20.5	27.34	25.61	37.18	11.59
Merged-chr19-37472818-3	chr19	37472734	37472934	+	959.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	7580.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	14.54	14.34	7.99	8.04	12.27	19.13	11.29	10.18	25.37	26.61	33.16	7.83
Merged-chr19-47138318-3	chr19	47138216	47138416	+	959.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133746)	promoter-TSS (NM_133746)	-22.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	6.86	17.1	16.54	21.32	14.32	16.62	10.3	18.56	13.37	22.59	31.66	9.4
Merged-chrX-36101052-3	chrX	36100964	36101164	+	959.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11044.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	20.19	14.34	14.83	15.69	14.73	16.62	24.91	21.59	21.64	12.55	17.08	11.59
Merged-chr8-84709322-3	chr8	84709180	84709380	+	959.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	7823.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	18.17	18.61	9.13	17.7	10.64	23.83	11.29	13.88	13.18	6.53	18.09	6.58
Merged-chr3-152122310-2	chr3	152122215	152122415	+	959.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	43585.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	17.36	4.28	4.56	14.48	15.96	21.64	12.62	18.03	0.2	1.51	2.51	1.57
Merged-chr7-19203171-3	chr7	19203064	19203264	+	959.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347582, intron 20 of 21)	intron (NM_001347582, intron 20 of 21)	-9374.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	29.88	39.74	34.23	19.71	9.41	52.99	10.96	9.76	47.4	37.66	41.2	21.3
Merged-chr14-30581352-1	chr14	30581252	30581452	+	959.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9203.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.81	1.01	4.56	3.22	3.68	2.82	0.33	1.68	23.01	14.06	13.57	8.77
Merged-chr6-108445221-3	chr6	108445109	108445309	+	959.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-44534.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	14.94	10.06	44.5	30.16	78.14	32.3	90.68	127.4	44.84	20.59	85.42	44.17
Merged-chr11-94760487-3	chr11	94760400	94760600	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001105561, intron 1 of 4)	intron (NM_001105561, intron 1 of 4)	682.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	18.98	17.61	17.11	11.26	29.86	19.44	16.94	21.81	26.36	12.05	35.17	21.62
Merged-chr13-52188813-3	chr13	52188700	52188900	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92059.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	16.56	9.06	14.83	16.49	27.41	23.83	13.29	21.76	36.19	33.14	37.18	17.54
Merged-chr17-80180188-3	chr17	80180094	80180294	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	27111.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	19.79	16.85	18.83	15.28	20.86	21.64	16.61	17.61	20.26	22.59	15.07	15.98
Merged-chr2-155369699-3	chr2	155369598	155369798	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-12158.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	16.96	12.32	18.25	16.09	13.09	8.47	17.61	14.55	18.29	16.57	22.61	17.86
Merged-chr10-14048663-3	chr10	14048575	14048775	+	959.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	82296.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	27.05	15.34	37.65	11.66	29.46	39.82	20.93	24.08	24.78	33.14	30.65	9.08
Merged-chr13-17804273-3	chr13	17804149	17804349	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	848.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	12.11	11.32	12.55	9.65	11.05	22.89	20.26	18.79	22.82	17.07	23.11	16.29
Merged-chr2-78054131-3	chr2	78054014	78054214	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_108098, intron 1 of 6)	MER34A|LTR|ERV1	2937.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	15.34	14.59	14.26	14.08	24.55	29.79	23.25	28.04	13.77	20.59	14.57	13.78
Merged-chr2-114233252-3	chr2	114233154	114233354	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31822.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	5.65	12.07	10.84	13.27	16.36	21.01	12.95	16.65	17.31	8.03	17.08	13.16
Merged-chr8-86861740-3	chr8	86861634	86861834	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030563, exon 2 of 7)	exon (NM_030563, exon 2 of 7)	23524.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	16.96	18.11	19.4	19.31	13.5	21.32	11.63	18.67	28.13	16.07	29.65	8.46
Merged-chr7-44998714-3	chr7	44998623	44998823	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016849, exon 2 of 8)	exon (NM_016849, exon 2 of 8)	1075.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	18.98	33.96	14.83	12.07	28.64	64.6	15.94	12.48	54.09	49.21	43.72	11.28
Merged-chr2-84670766-3	chr2	84670670	84670870	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037279)	promoter-TSS (NM_001037279)	-62.0	NM_001037279	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	17.77	14.34	10.84	14.48	27.0	18.5	14.28	25.51	26.95	15.57	32.16	12.53
Merged-chr16-3699454-3	chr16	3699371	3699571	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18653.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	7.67	6.79	14.26	19.31	39.68	43.27	30.89	36.5	75.13	70.8	78.89	40.1
Merged-chr13-98693604-3	chr13	98693517	98693717	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1214.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	24.23	24.15	20.54	11.26	16.36	36.69	10.3	14.52	32.06	19.58	21.1	8.14
Merged-chr12-69682050-5	chr12	69681924	69682124	+	959.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135559)	promoter-TSS (NM_001135559)	-172.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	3.63	3.77	2.28	0.8	6.55	7.21	3.65	5.64	15.54	7.03	11.56	8.77
Merged-chr1-155384094-3	chr1	155383985	155384185	+	959.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 2 of 14)	intron (NM_011273, intron 2 of 14)	33359.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	12.11	10.56	38.22	18.9	18.82	19.44	10.96	16.23	27.73	20.59	36.18	9.4
Merged-chr10-60745087-3	chr10	60744976	60745176	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	7706.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	23.42	13.33	11.98	13.27	29.46	17.25	20.26	14.83	16.72	25.61	39.19	16.6
Merged-chr10-19088596-3	chr10	19088483	19088683	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53166.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	27.05	14.84	11.98	21.72	18.0	20.38	9.63	13.04	25.18	13.56	23.62	9.4
Merged-chr2-27289210-3	chr2	27289100	27289300	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-41897.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	19.38	28.67	33.66	15.69	13.5	23.83	8.64	9.73	13.96	26.11	21.61	10.34
Merged-chr9-44512221-3	chr9	44512123	44512323	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030256)	TTS (NM_030256)	13087.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	15.75	20.63	19.4	24.13	16.36	26.97	17.27	15.17	19.87	12.05	28.64	12.53
Merged-chr18-77800121-3	chr18	77800030	77800230	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-3740.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	27.86	11.07	10.84	14.08	28.23	26.34	16.94	21.81	40.32	38.66	25.12	20.68
Merged-chr12-79725088-3	chr12	79724992	79725192	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	199641.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	23.42	10.06	12.55	20.51	20.46	12.86	4.98	21.03	25.57	16.07	24.12	11.59
Merged-chrX-96238489-3	chrX	96238401	96238601	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	27.86	10.56	22.25	26.55	24.96	22.26	19.93	24.9	13.37	11.55	16.08	14.41
Merged-chr17-26534900-3	chr17	26534785	26534985	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26413.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	22.21	8.05	24.53	17.29	24.55	19.76	36.54	31.37	12.19	15.57	32.66	19.74
Merged-chr10-25443795-2	chr10	25443697	25443897	+	959.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013511, exon 3 of 20)	exon (NM_013511, exon 3 of 20)	35429.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	20.59	16.35	27.38	18.9	14.73	9.09	15.94	22.12	27.54	13.05	11.05	5.95
Merged-chr11-101657908-2	chr11	101657784	101657984	+	959.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-7657.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	12.11	4.78	3.42	2.41	15.14	7.53	12.29	8.61	13.37	6.53	16.08	15.98
Merged-chr19-9071639-3	chr19	9071556	9071756	+	959.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104460, intron 6 of 6)	intron (NR_104460, intron 6 of 6)	16300.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	14.13	11.32	23.39	33.78	11.86	16.93	15.94	25.01	11.41	10.54	24.62	10.34
Merged-chr1-191288940-3	chr1	191288834	191289034	+	959.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29184.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	21.8	22.89	11.41	19.71	35.18	36.37	14.95	29.5	31.67	20.59	42.21	7.52
Merged-chr10-118407030-3	chr10	118406930	118407130	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34016.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	31.09	25.66	37.65	42.23	42.96	62.09	52.82	57.39	9.64	13.56	30.15	14.41
Merged-chr13-108015325-3	chr13	108015255	108015455	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29119.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	12.11	6.29	6.28	10.05	18.82	18.81	13.29	19.32	18.49	21.59	23.62	10.96
Merged-chrX-36107688-3	chrX	36107596	36107796	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4412.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	25.84	20.37	29.09	15.28	29.86	32.93	23.92	17.1	29.7	26.61	34.67	9.4
Merged-chr5-76522167-3	chr5	76522057	76522257	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7150.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	21.0	10.31	14.26	15.28	23.73	16.62	13.95	21.84	20.85	21.59	28.64	26.63
Merged-chr11-106613970-3	chr11	106613871	106614071	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1041.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	21.8	19.12	14.26	13.67	18.41	16.93	7.97	8.94	14.55	13.05	17.59	11.28
Merged-chrX-49116678-3	chrX	49116571	49116771	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271448, intron 2 of 14)	Lx7|LINE|L1	171571.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	19.79	15.09	23.39	20.91	20.86	10.98	33.55	36.81	28.72	18.08	38.19	14.1
Merged-chr7-145025600-2	chr7	145025489	145025689	+	959.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85664.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.04	6.54	9.13	4.42	2.86	11.6	3.65	6.48	12.98	8.03	9.04	11.9
Merged-chr8-27175732-3	chr8	27175628	27175828	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1082.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	17.36	10.56	18.25	18.1	18.82	17.87	9.97	14.89	18.88	24.1	22.61	20.05
Merged-chr9-116111817-2	chr9	116111715	116111915	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 3 of 6)	URR1B|DNA|hAT-Charlie	63548.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	9.69	13.08	21.68	24.94	58.09	43.59	41.52	47.75	3.15	5.52	4.02	1.57
Merged-chr2-10080431-4	chr2	10080283	10080483	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	127.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	58.15	85.27	57.62	70.79	77.73	96.58	90.68	88.43	110.54	119.0	147.73	97.11
Merged-chr9-78194097-3	chr9	78194008	78194208	+	959.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010357, intron 1 of 6)	B2_Mm2|SINE|B2	2142.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	11.71	8.3	13.12	25.34	15.14	23.52	12.95	16.26	20.65	24.6	25.63	14.1
Merged-chr13-30549051-3	chr13	30548958	30549158	+	959.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3742.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	27.86	20.63	9.13	38.21	22.09	33.24	20.59	30.9	40.71	45.69	49.24	24.75
Merged-chr17-65745070-3	chr17	65744985	65745185	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	27667.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	15.34	7.04	15.97	18.9	26.59	20.7	17.61	26.52	71.4	66.28	67.33	31.33
Merged-chr17-45033732-3	chr17	45033629	45033829	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178652, intron 7 of 11)	intron (NM_178652, intron 7 of 11)	-152844.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	17.36	8.55	34.23	15.69	13.5	11.92	33.55	24.5	23.8	30.13	30.65	18.48
Merged-chr4-101198515-3	chr4	101198422	101198622	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	B1F2|SINE|Alu	66760.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	17.36	10.31	27.38	14.48	15.96	16.62	13.95	24.48	18.69	8.03	20.6	16.29
Merged-chr3-148933320-3	chr3	148933224	148933424	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	21311.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	14.94	23.9	29.66	14.48	33.96	42.02	24.91	40.91	22.03	16.57	24.12	10.34
Merged-chr4-57027231-2	chr4	57027121	57027321	+	959.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-36830.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	16.15	10.31	26.81	16.89	21.27	25.09	24.25	28.54	1.77	3.01	5.02	1.88
Merged-chr10-117320795-3	chr10	117320697	117320897	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27929.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	12.92	26.16	13.12	16.89	18.0	23.83	12.29	8.33	19.47	21.09	11.56	5.33
Merged-chr9-113780267-3	chr9	113780166	113780366	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-13064.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	26.25	19.87	43.35	33.78	11.86	25.09	13.95	12.81	36.78	21.09	19.6	26.31
Merged-chr17-50872781-3	chr17	50872670	50872870	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 14 of 21)	intron (NM_028162, intron 14 of 21)	174089.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	11.71	13.83	27.38	18.1	28.64	26.03	16.94	36.34	23.8	29.12	37.18	12.22
Merged-chr12-35827120-3	chr12	35827033	35827233	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98488.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	34.73	19.62	14.83	14.88	31.5	51.43	12.95	23.33	72.77	44.69	58.29	26.0
Merged-chr17-24654156-3	chr17	24654068	24654268	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3863.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	23.82	12.32	9.7	20.91	19.23	17.87	14.62	13.71	32.06	34.65	24.62	25.06
Merged-chr6-99655695-3	chr6	99655596	99655796	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	11075.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	28.67	28.93	30.23	31.37	13.91	25.09	23.58	26.1	22.42	12.55	27.13	9.4
Merged-chr4-139236231-3	chr4	139236110	139236310	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	42099.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	28.27	27.92	34.23	24.53	7.77	9.72	7.97	12.22	19.67	28.12	56.28	24.12
Merged-chr7-46847039-3	chr7	46846964	46847164	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	-18.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	8.48	16.85	14.26	16.09	18.41	29.16	24.25	30.34	35.6	20.59	39.7	22.87
Merged-chr4-150217260-3	chr4	150217169	150217369	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-16134.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	16.56	9.56	13.12	17.29	13.5	19.44	13.62	19.68	14.55	10.54	24.62	13.78
Merged-chr5-65561286-3	chr5	65561193	65561393	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310618, intron 1 of 4)	RLTR26_Mus|LTR|ERVK	24048.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	19.79	19.37	39.36	32.18	20.86	24.77	13.62	33.76	17.11	11.05	22.11	24.75
Merged-chr9-83568307-3	chr9	83568214	83568414	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	19976.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	16.15	19.87	17.11	11.66	20.86	35.12	13.62	24.76	60.97	56.24	74.87	39.47
Merged-chr13-75824783-3	chr13	75824698	75824898	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15087.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.06	14.09	22.82	14.88	20.05	17.25	11.29	24.53	18.88	17.57	45.22	18.48
Merged-chr2-160220739-3	chr2	160220641	160220841	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106753.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	13.73	10.31	3.42	17.7	20.46	23.83	28.9	28.15	15.54	7.53	23.62	10.02
Merged-chr7-45097699-3	chr7	45097617	45097817	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-5504.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	40.78	15.85	43.35	47.86	46.23	18.81	52.15	84.93	9.44	2.51	17.59	9.71
Merged-chrX-85838730-3	chrX	85838629	85838829	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12068.0	NR_152196	100041562.0	Mm.448008	NR_152196		Gm14762	-	predicted gene 14762	ncRNA	18.17	14.09	14.83	15.69	22.91	24.77	28.9	37.93	22.62	28.62	36.18	12.53
Merged-chr17-50588163-3	chr17	50588061	50588261	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	78614.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	19.38	12.83	11.98	10.05	14.73	17.87	13.29	27.53	20.46	21.09	23.11	17.86
Merged-chr17-21370549-3	chr17	21370455	21370655	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-13193.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	18.98	15.34	11.98	15.69	31.09	21.32	18.27	31.71	19.67	16.57	21.61	12.53
Merged-chr16-37682715-3	chr16	37682505	37682705	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28237.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.63	4.78	3.99	10.05	4.09	5.02	5.98	6.9	2.95	2.01	8.54	5.95
Merged-chr16-75767841-3	chr16	75767755	75767955	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1037.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	11.31	13.33	15.4	19.71	14.73	13.48	12.95	17.75	10.23	12.55	17.59	11.9
Merged-chr6-38866029-3	chr6	38865939	38866139	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	10151.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	11.71	11.07	30.23	37.81	32.32	34.49	20.93	52.23	42.88	25.11	24.62	12.53
Merged-chr8-19601772-3	chr8	19601657	19601857	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106660.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	11.71	13.83	21.68	14.08	24.55	35.43	34.55	21.5	29.5	22.59	27.13	28.51
Merged-chr2-120970690-3	chr2	120970576	120970776	+	959.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009461)	promoter-TSS (NM_009461)	39.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	27.46	20.12	33.66	11.26	24.55	36.37	20.93	16.12	30.88	28.62	23.62	14.72
Merged-chr6-8003990-2	chr6	8003892	8004092	+	959.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	158768.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	18.57	5.53	15.97	24.53	6.95	2.82	10.96	8.75	6.29	1.0	6.53	2.51
Merged-chr5-124116155-3	chr5	124116101	124116301	+	959.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144509)	promoter-TSS (NM_144509)	93.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	9.69	7.8	21.11	4.83	18.41	15.68	16.61	15.79	14.55	18.08	12.06	10.02
Merged-chr10-89444402-3	chr10	89444308	89444508	+	959.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	-441.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	14.13	19.87	15.97	11.66	23.73	12.54	17.94	25.93	30.88	15.57	20.6	17.86
Merged-chr2-76690992-3	chr2	76690907	76691107	+	959.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15692.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	15.75	14.09	20.54	27.75	16.36	16.93	27.24	40.74	24.0	13.56	59.8	26.94
Merged-chr6-87038408-3	chr6	87038304	87038504	+	959.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4442.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	13.33	23.64	31.38	20.51	8.59	14.42	3.65	13.63	47.01	18.08	29.14	25.69
Merged-chr15-9463800-4	chr15	9463695	9463895	+	959.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029341, intron 4 of 4)	intron (NM_029341, intron 4 of 4)	27767.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	8.08	20.12	10.84	12.47	15.55	18.81	15.61	13.04	11.8	12.55	15.07	7.52
Merged-chr1-171817155-3	chr1	171817065	171817265	+	959.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22532.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	21.0	8.55	25.67	19.71	16.36	23.52	27.24	24.06	22.82	14.56	32.66	11.59
Merged-chr12-55490515-4	chr12	55490448	55490648	+	959.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010907, exon 5 of 6)	exon (NM_010907, exon 5 of 6)	2099.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	31.09	28.17	21.11	11.26	23.73	35.12	19.27	11.89	34.22	45.69	21.1	10.34
Merged-chr7-58686800-3	chr7	58686697	58686897	+	959.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	MTD|LTR|ERVL-MaLR	28595.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	45.63	31.44	67.88	32.98	8.18	12.54	11.29	10.12	51.73	33.14	85.92	42.6
Merged-chr9-83553940-3	chr9	83553787	83553987	+	959.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	5549.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	19.79	10.56	18.25	7.24	20.05	61.77	27.9	21.31	28.91	28.12	23.11	10.34
Merged-chr9-14725251-3	chr9	14725152	14725352	+	959.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	15481.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	14.13	16.35	19.97	22.12	10.64	20.7	16.61	24.28	18.29	17.57	24.62	23.81
Merged-chr3-107205329-2	chr3	107205227	107205427	+	959.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	16405.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	15.34	1.51	12.55	7.24	5.73	10.35	1.99	15.36	15.54	15.06	20.1	12.53
Merged-chr13-21479184-3	chr13	21479064	21479264	+	959.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039115, exon 1 of 3)	exon (NM_001039115, exon 1 of 3)	315.0	NM_001039115	544922.0	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272	zinc finger with KRAB and SCAN domains 4	protein-coding	18.57	37.73	31.38	46.66	44.59	26.03	25.91	38.8	12.98	10.54	17.59	16.6
Merged-chr9-64704676-3	chr9	64704573	64704773	+	959.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33083.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	16.15	17.61	10.84	19.31	35.59	28.22	10.63	23.55	23.41	18.08	12.56	18.48
Merged-chr12-99965761-3	chr12	99965662	99965862	+	959.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146037, exon 2 of 3)	5' UTR (NM_146037, exon 2 of 3)	1263.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	21.4	14.34	20.54	25.34	28.23	17.87	17.27	20.94	14.16	11.05	34.17	17.54
Merged-chr2-11771908-3	chr2	11771820	11772020	+	959.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5665.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	18.57	7.55	18.83	24.94	20.86	19.44	20.93	32.16	30.29	19.08	35.17	17.86
Merged-chr10-79793588-3	chr10	79793498	79793698	+	959.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161747)	promoter-TSS (NM_001161747)	26.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	22.21	16.85	24.53	14.08	24.55	16.31	9.3	21.98	24.0	16.57	29.14	14.72
Merged-chr12-92928372-2	chr12	92928270	92928470	+	959.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	516453.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.0	1.51	0.0	0.0	14.32	11.92	18.27	23.97	20.85	20.59	30.15	25.69
Merged-chr17-36187748-2	chr17	36187651	36187851	+	959.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008208, intron 3 of 5)	intron (NM_008208, intron 3 of 5)	2400.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	2.83	0.5	0.57	0.4	13.09	10.98	6.64	8.78	12.0	3.51	18.59	5.95
Merged-chr6-127574226-2	chr6	127574122	127574322	+	959.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3753.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	2.83	7.55	4.56	6.84	15.55	10.66	21.92	21.03	14.36	13.56	31.15	11.28
Merged-chr15-97925021-3	chr15	97924936	97925136	+	959.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16740.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	16.56	33.2	27.95	20.91	10.23	13.17	6.64	12.2	23.21	7.03	22.11	12.84
Merged-chr2-49554927-3	chr2	49554774	49554974	+	959.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64440.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	10.5	16.35	9.7	12.47	6.95	13.48	13.95	9.31	27.54	31.13	35.17	10.02
Merged-chr13-43779181-3	chr13	43779058	43779258	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5954.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	18.17	17.86	39.36	23.33	27.82	33.87	19.93	23.44	32.45	11.55	39.7	12.84
Merged-chr15-41765050-3	chr15	41764901	41765101	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-23994.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	9.69	5.79	5.7	5.23	11.05	15.37	8.3	9.95	10.62	11.55	13.06	11.59
Merged-chr18-53250884-3	chr18	53250775	53250975	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	5213.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	17.36	2.26	14.26	11.26	22.91	13.8	6.64	22.07	20.65	13.05	23.62	16.6
Merged-chr12-54844604-3	chr12	54844517	54844717	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18260.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	12.92	13.08	15.97	26.95	17.59	15.37	10.96	15.11	16.33	17.07	19.09	13.16
Merged-chr8-125756761-3	chr8	125756640	125756840	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	22537.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	9.69	16.1	18.83	16.89	30.68	22.58	23.58	23.47	26.16	19.58	37.69	17.23
Merged-chr13-45031926-3	chr13	45031832	45032032	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29836.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	18.57	9.31	24.53	28.15	27.41	26.03	27.57	50.22	19.28	17.57	31.66	16.6
Merged-chrX-106139618-3	chrX	106139500	106139700	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3675.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	32.3	27.17	35.94	36.6	33.14	46.41	30.56	36.81	21.64	13.05	21.1	29.13
Merged-chr16-10950743-2	chr16	10950633	10950833	+	959.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35936.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	7.67	10.56	6.85	12.07	12.68	16.93	5.31	10.65	25.37	23.1	17.59	27.88
Merged-chr2-59240782-1	chr2	59240682	59240882	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79932.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.44	4.28	3.42	0.8	3.27	4.39	9.63	7.21	5.9	6.03	18.59	5.33
Merged-chr17-35048555-3	chr17	35048443	35048643	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1700.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	17.77	14.59	19.97	25.34	16.36	20.38	19.93	25.46	17.7	9.54	15.58	15.35
Merged-chr10-105490838-1	chr10	105490738	105490938	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	83641.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.04	1.01	0.0	6.44	9.41	1.57	3.99	8.5	3.34	5.02	10.05	3.76
Merged-chr14-14015160-1	chr14	14015060	14015260	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139227, intron 3 of 11)	intron (NM_139227, intron 3 of 11)	2669.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	1.62	2.52	5.7	5.63	3.27	1.88	8.3	8.33	7.08	7.53	3.01	6.58
Merged-chr6-35178034-1	chr6	35177934	35178134	+	959.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027513, intron 1 of 42)	CpG	418.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	11.71	10.56	4.56	7.24	8.59	9.41	11.63	8.07	14.36	14.06	17.08	11.28
Merged-chr5-125383986-3	chr5	125383884	125384084	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	6033.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	15.75	13.33	3.42	2.41	10.64	26.03	3.99	1.91	12.39	16.07	9.55	6.58
Merged-chr16-23987378-1	chr16	23987278	23987478	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	1474.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	2.42	1.01	2.28	3.22	3.27	1.88	4.32	1.85	5.7	5.02	9.55	3.13
Merged-chr2-60283434-3	chr2	60283319	60283519	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1065.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	20.19	22.39	17.11	7.24	25.77	41.71	22.26	13.51	34.03	39.67	16.08	9.71
Merged-chr12-24780795-1	chr12	24780695	24780895	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50804.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.23	0.0	3.99	5.63	6.14	3.76	6.64	10.51	0.39	1.0	2.01	3.76
Merged-chr2-102895198-1	chr2	102895098	102895298	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	6467.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.83	3.52	0.0	2.82	16.36	15.37	9.3	10.82	5.9	4.02	5.53	2.51
Merged-chr5-64412541-3	chr5	64412455	64412655	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55387.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	8.88	17.36	12.55	3.62	18.0	37.0	11.96	6.56	17.7	20.59	11.56	5.01
Merged-chr14-99763543-1	chr14	99763443	99763643	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	386253.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.42	3.02	9.7	0.8	4.5	11.29	3.99	10.82	3.74	0.0	5.53	3.76
Merged-chr2-132180872-1	chr2	132180772	132180972	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35552.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.04	1.26	5.7	8.04	11.86	8.78	3.32	7.68	6.29	8.54	8.04	3.76
Merged-chr2-118972899-3	chr2	118972790	118972990	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	46393.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	30.28	22.89	10.84	11.26	19.23	25.4	11.63	20.72	53.3	37.66	42.21	27.25
Merged-chr19-59350689-2	chr19	59350589	59350789	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4909.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	29.07	27.42	33.66	18.9	10.23	8.47	7.64	9.62	9.64	7.03	7.54	0.63
Merged-chrX-93644153-1	chrX	93644053	93644253	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10710.0	NM_177546	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	7.27	2.26	7.99	12.47	12.68	3.14	10.3	9.45	9.24	7.03	7.54	2.51
Merged-chr5-146794328-3	chr5	146794197	146794397	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	(CCCCAG)n|Simple_repeat|Simple_repeat	659.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.85	6.29	11.41	9.65	12.68	15.68	12.95	10.23	13.77	9.54	13.57	12.53
Merged-chr2-120571336-2	chr2	120571235	120571435	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	3664.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	12.92	17.36	16.54	4.83	22.09	52.05	13.29	11.21	4.92	2.51	2.51	2.51
Merged-chr13-5424632-1	chr13	5424532	5424732	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	433460.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.81	2.26	3.42	5.23	4.09	5.64	12.95	7.29	6.49	8.03	9.04	1.88
Merged-chr9-53764895-1	chr9	53764795	53764995	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6640.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	7.27	3.52	0.0	9.65	7.77	2.51	2.66	11.86	8.65	8.54	4.52	5.01
Merged-chr17-56220024-3	chr17	56219929	56220129	+	958.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1140.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	24.23	9.81	14.83	25.74	24.14	23.52	19.93	23.19	24.78	23.1	32.16	18.48
Merged-chr10-19012097-3	chr10	19012033	19012233	+	958.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-170.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	19.38	22.39	17.11	5.63	33.14	35.12	10.3	6.2	42.09	51.21	33.16	10.34
Merged-chr10-67644407-3	chr10	67644325	67644525	+	958.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72466.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	22.61	12.32	19.4	24.94	25.36	21.64	8.64	27.73	32.26	27.62	36.18	27.57
Merged-chr10-67683788-3	chr10	67683691	67683891	+	958.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111832.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	14.54	10.06	10.27	25.34	14.73	21.01	16.94	20.89	21.24	8.54	33.16	16.29
Merged-chr16-97478852-3	chr16	97478771	97478971	+	958.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020622, intron 3 of 7)	intron (NM_020622, intron 3 of 7)	-15965.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	14.54	15.34	26.24	16.89	10.23	15.37	13.95	16.54	21.64	14.56	30.15	8.77
Merged-chr19-17346411-2	chr19	17346313	17346513	+	958.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-6908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	10.9	12.83	24.53	19.31	20.05	14.74	10.96	11.92	8.46	6.03	4.02	10.02
Merged-chr15-73622076-3	chr15	73621968	73622168	+	958.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	2676.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	19.79	15.59	16.54	15.69	20.05	21.64	6.98	21.7	29.5	29.12	21.1	24.12
Merged-chr11-20403671-3	chr11	20403579	20403779	+	958.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-70966.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	5.25	5.03	14.26	18.9	10.64	3.14	9.63	10.4	11.01	8.03	20.1	14.72
Merged-chr10-120166032-3	chr10	120165931	120166131	+	958.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 7 of 11)	intron (NM_001359184, intron 7 of 11)	35566.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	18.57	31.19	24.53	10.46	19.64	26.03	12.29	10.07	71.0	48.2	99.99	38.85
Merged-chr1-155972523-3	chr1	155972482	155972682	+	958.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039184, intron 1 of 37)	intron (NM_001039184, intron 1 of 37)	673.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	9.69	21.38	10.27	4.02	11.45	15.37	13.29	5.92	18.69	25.61	14.07	4.39
Merged-chr1-57394179-2	chr1	57394082	57394282	+	958.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037742, intron 3 of 7)	intron (NM_001037742, intron 3 of 7)	-12366.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	5.65	6.79	3.42	3.22	10.64	22.26	5.65	11.3	18.88	18.58	8.54	11.28
Merged-chr1-128020529-3	chr1	128020426	128020626	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 6 of 20)	L1ME1|LINE|L1	81945.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	8.48	12.58	30.23	25.34	26.59	35.43	17.61	42.25	28.13	16.07	23.62	22.56
Merged-chr2-91444660-3	chr2	91444544	91444744	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311144)	promoter-TSS (NM_001311144)	70.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	23.82	21.63	17.11	13.67	17.18	29.48	7.31	11.27	24.98	14.56	20.6	7.52
Merged-chr10-112990943-3	chr10	112990837	112991037	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61911.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	13.33	14.59	11.41	18.5	36.41	16.31	37.87	46.04	23.6	22.59	46.73	26.0
Merged-chr2-17896203-3	chr2	17896102	17896302	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	100756.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	19.79	18.36	18.83	28.56	8.59	12.23	11.63	14.66	16.72	5.52	17.59	6.89
Merged-chr11-96873274-1	chr11	96873174	96873374	+	958.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22881.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	2.83	7.8	4.56	4.42	6.95	8.47	3.32	3.62	16.72	22.59	20.6	7.83
Merged-chr5-118638115-1	chr5	118638015	118638215	+	958.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	77396.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.46	17.36	5.7	9.65	11.86	14.11	8.97	12.31	9.05	13.56	11.05	1.88
Merged-chr9-82829255-3	chr9	82829152	82829352	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022986)	promoter-TSS (NM_022986)	-554.0	NM_022986	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	18.17	25.4	25.67	12.07	14.73	30.1	20.93	17.07	33.83	32.13	35.17	4.39
Merged-chr2-45110389-3	chr2	45110288	45110488	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-11.0	NM_001355291	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	37.55	37.48	35.37	16.49	38.46	61.77	36.21	29.07	66.87	51.72	64.82	31.33
Merged-chr7-139219264-3	chr7	139219168	139219368	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-5961.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	33.92	13.83	25.67	18.1	36.82	34.81	24.91	51.45	21.24	10.54	19.6	15.98
Merged-chr16-21339500-3	chr16	21339396	21339596	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6140.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	10.09	15.85	27.38	24.13	24.96	24.77	18.6	27.36	17.31	39.16	30.65	18.17
Merged-chr1-167393824-3	chr1	167393685	167393885	+	958.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	12.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	15.34	14.59	16.54	15.69	16.77	12.23	11.96	14.8	15.54	12.55	32.16	11.9
Merged-chr2-35442258-3	chr2	35442191	35442391	+	958.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19158.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	19.38	23.64	20.54	18.5	10.23	12.54	9.97	7.09	9.64	4.52	11.56	8.14
Merged-chr10-25119288-3	chr10	25119195	25119395	+	958.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80875.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	12.92	20.37	19.4	18.1	24.14	37.94	22.92	38.05	23.21	15.06	32.66	20.36
Merged-chr14-70823284-3	chr14	70823181	70823381	+	958.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29652.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	20.59	18.86	33.66	17.7	26.18	20.38	15.94	31.23	15.93	12.05	13.57	5.01
Merged-chr2-155309529-5	chr2	155309329	155309529	+	958.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004721, intron 7 of 11)	intron (NM_001004721, intron 7 of 11)	33065.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	14.13	12.07	7.99	24.53	20.86	16.31	4.98	16.43	12.19	16.57	32.16	14.1
Merged-chr7-35123017-2	chr7	35122948	35123148	+	958.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3755.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.86	6.79	5.13	11.26	13.91	4.08	6.98	5.41	3.74	11.05	4.52	2.19
Merged-chr6-17770754-3	chr6	17770666	17770866	+	958.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	21596.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	19.38	12.83	13.12	14.08	20.86	21.95	11.96	19.99	22.62	20.08	36.18	7.83
Merged-chr4-115850147-2	chr4	115850059	115850259	+	958.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	10961.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	10.09	7.04	10.27	12.47	27.0	10.03	10.96	25.32	17.31	16.07	17.08	15.04
Merged-chr2-73038619-2	chr2	73038512	73038712	+	958.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58166.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.86	4.53	5.7	5.63	20.86	13.8	21.59	19.21	21.83	12.05	49.75	27.25
Merged-chr12-111557740-3	chr12	111557651	111557851	+	958.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16651.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	17.77	13.58	17.68	19.31	13.91	15.99	8.97	19.37	20.46	29.12	26.63	11.59
Merged-chr6-47979144-3	chr6	47979045	47979245	+	958.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25755.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	45.23	30.94	18.83	27.35	31.09	24.15	17.61	25.51	15.34	14.56	18.59	8.77
Merged-chr11-69934331-3	chr11	69934224	69934424	+	958.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1575.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	13.73	21.88	15.97	12.07	14.32	17.25	4.32	11.55	16.72	18.08	24.62	24.75
Merged-chr11-74897216-3	chr11	74897119	74897319	+	958.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-139.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	20.19	13.08	10.27	20.91	23.32	18.5	15.94	12.93	25.77	14.56	24.62	15.04
Merged-chr3-106486195-5	chr3	106486083	106486283	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033207)	promoter-TSS (NR_033207)	143.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	9.29	13.33	7.42	8.45	20.05	27.91	15.61	11.13	13.96	14.06	19.09	11.9
Merged-chr15-8705081-3	chr15	8704982	8705182	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	5725.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	15.34	18.36	29.09	8.85	12.27	15.37	6.98	8.92	21.24	23.1	27.13	10.96
Merged-chr7-44832321-3	chr7	44832218	44832418	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053074)	TTS (NM_053074)	-3970.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	12.52	21.13	31.95	29.36	21.27	30.42	23.58	22.26	33.04	15.06	17.08	11.28
Merged-chr9-16313472-3	chr9	16313366	16313566	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	ID_B1|SINE|B4	64765.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	9.29	12.32	19.97	18.1	20.86	19.76	20.26	22.07	16.92	19.58	17.59	10.65
Merged-chr7-4493010-3	chr7	4492912	4493112	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	8668.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	14.94	5.79	6.85	15.69	23.73	17.25	26.24	27.2	13.18	5.52	25.12	6.89
Merged-chr5-92398363-3	chr5	92398259	92398459	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181728, intron 2 of 7)	intron (NM_181728, intron 2 of 7)	10225.0	NM_001310665	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	23.02	17.86	15.97	20.51	11.05	17.56	13.29	13.12	21.44	13.05	21.1	7.21
Merged-chr18-80739073-3	chr18	80738979	80739179	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015805, intron 27 of 28)	intron (NM_015805, intron 27 of 28)	-26008.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	18.17	17.61	26.81	22.52	28.23	20.7	31.22	52.93	10.42	21.59	31.66	19.74
Merged-chr10-62339503-3	chr10	62339383	62339583	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	938.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	14.54	14.84	5.7	8.45	7.77	8.47	11.29	8.36	16.13	16.57	12.06	6.27
Merged-chr10-93357417-1	chr10	93357317	93357517	+	958.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21206.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	7.67	6.79	7.99	2.41	14.73	10.35	7.64	7.29	0.39	0.0	0.0	1.25
Merged-chr12-110843844-3	chr12	110843740	110843940	+	958.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152102)	TTS (NR_152102)	2811.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	12.52	22.89	19.97	11.66	15.14	13.48	12.29	10.74	32.65	19.58	22.61	20.36
Merged-chr17-34391658-3	chr17	34391556	34391756	+	958.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7164.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	31.9	26.16	17.68	11.26	14.32	26.65	14.28	9.2	40.52	23.6	24.62	20.68
Merged-chr17-10765034-3	chr17	10764937	10765137	+	958.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75154.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	16.96	15.85	18.25	12.07	11.86	11.92	11.63	19.77	16.13	18.58	17.08	12.53
Merged-chr15-100669551-3	chr15	100669442	100669642	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001270537)	promoter-TSS (NM_001270537)	-42.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	20.59	13.58	10.27	15.69	15.96	23.2	9.97	14.05	20.65	15.06	20.1	19.11
Merged-chr7-116462599-3	chr7	116462492	116462692	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER76|LTR|ERVL	-19134.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	22.21	10.82	10.27	25.34	33.96	24.15	24.25	25.74	23.01	31.63	9.55	15.98
Merged-chrX-57306887-3	chrX	57306794	57306994	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	19707.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	13.73	23.14	39.93	31.37	18.41	17.56	13.95	19.04	14.36	14.06	17.59	10.96
Merged-chr1-180405823-3	chr1	180405729	180405929	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-75280.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	12.11	15.09	14.26	8.85	20.86	8.15	23.58	17.55	24.39	21.09	26.13	18.17
Merged-chr18-38997266-3	chr18	38997135	38997335	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	4090.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	20.19	37.23	33.66	23.73	10.64	23.2	16.94	18.39	23.6	16.57	17.08	9.4
Merged-chr16-45651699-2	chr16	45651596	45651796	+	958.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2422.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	10.9	4.02	6.85	19.31	5.73	7.84	11.63	16.63	112.9	94.9	166.82	72.68
Merged-chr11-103005250-3	chr11	103005152	103005352	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-5331.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	23.42	14.59	21.11	15.28	20.86	15.99	19.27	20.78	24.59	7.53	23.11	10.34
Merged-chr10-125273847-1	chr10	125273747	125273947	+	958.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34969.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.85	8.05	2.28	8.04	12.68	3.14	5.98	11.33	9.05	3.51	8.54	3.45
Merged-chr12-52396551-2	chr12	52396433	52396633	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84076.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	12.11	16.6	2.28	12.07	13.5	11.6	13.62	21.93	15.54	8.54	8.04	4.07
Merged-chr19-31834430-3	chr19	31834345	31834545	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34316.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	22.21	8.05	15.97	19.31	25.36	29.79	17.27	25.74	44.25	25.61	33.67	20.36
Merged-chr11-84180260-2	chr11	84180164	84180364	+	958.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12788.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	19.38	13.83	4.56	12.07	12.27	17.87	12.95	14.41	16.72	17.57	11.56	17.23
Merged-chr4-141142601-4	chr4	141142504	141142704	+	958.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2808.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	10.09	18.11	12.55	10.46	9.41	16.62	15.28	8.61	13.18	18.58	13.57	8.46
Merged-chr11-100760053-3	chr11	100759963	100760163	+	958.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081194)	promoter-TSS (NM_001081194)	-285.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	21.8	24.9	11.41	6.03	11.86	22.26	4.32	3.67	29.9	18.58	24.12	18.48
Merged-chr19-6292240-3	chr19	6292149	6292349	+	958.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-14208.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	22.61	26.41	37.65	15.28	17.59	35.12	22.26	10.88	35.6	30.13	32.16	9.4
Merged-chr11-115634265-3	chr11	115634165	115634365	+	958.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5970.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	22.21	13.33	21.11	14.48	26.18	18.19	12.62	14.83	22.03	27.62	32.66	9.71
Merged-chr1-177711170-3	chr1	177711088	177711288	+	958.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-18626.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	25.04	12.83	27.38	18.1	23.32	17.56	14.95	31.01	22.42	32.64	16.58	37.28
Merged-chr8-71568439-3	chr8	71568331	71568531	+	958.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-440.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	19.79	11.32	10.27	14.88	29.05	18.19	9.3	12.0	17.51	18.58	25.12	13.16
Merged-chr11-54802423-3	chr11	54802309	54802509	+	958.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14706.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	18.17	7.55	9.13	13.27	24.96	17.87	5.98	16.23	17.7	26.11	26.13	10.02
Merged-chrX-71814551-3	chrX	71814457	71814657	+	958.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1523.0	NM_001290781	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	11.31	11.07	13.69	14.08	17.18	14.74	11.63	14.61	32.26	21.59	22.61	29.45
Merged-chr6-52838912-3	chr6	52838808	52839008	+	958.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	70712.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	20.59	24.15	12.55	29.76	15.14	20.7	11.29	21.84	29.31	42.18	27.13	18.48
Merged-chr12-44181467-1	chr12	44181367	44181567	+	958.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28601.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	2.42	0.75	1.71	4.42	1.64	1.57	1.99	3.34	12.39	8.54	15.58	10.34
Merged-chr4-138326284-3	chr4	138326170	138326370	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026880)	promoter-TSS (NM_026880)	26.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	17.36	22.64	42.21	13.27	37.64	26.97	8.97	20.83	42.68	41.67	39.19	20.05
Merged-chr7-120203985-3	chr7	120203880	120204080	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026458)	promoter-TSS (NM_026458)	16.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	10.09	14.59	38.22	9.65	13.91	22.89	8.64	23.47	21.83	18.58	46.73	20.68
Merged-chr11-117200873-3	chr11	117200762	117200962	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	1201.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	31.9	18.61	10.27	26.95	19.23	29.79	21.26	27.84	26.75	17.57	13.57	21.3
Merged-chr10-82814781-3	chr10	82814650	82814850	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2627.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	16.15	12.32	7.42	12.87	8.18	14.11	22.92	21.36	31.86	22.09	35.17	15.35
Merged-chr15-6402949-3	chr15	6402844	6403044	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	16196.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	26.65	17.86	13.69	20.91	15.14	18.81	11.96	21.98	27.14	22.09	16.58	17.86
Merged-chr8-84423143-1	chr8	84423043	84423243	+	958.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	7779.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.42	2.26	3.99	2.41	29.86	9.41	12.62	34.57	0.0	0.0	0.0	0.0
Merged-chr13-9393644-1	chr13	9393544	9393744	+	958.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	117119.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	2.42	5.53	8.56	2.82	13.5	4.7	10.96	8.41	3.93	7.53	7.03	2.51
Merged-chr16-91380495-1	chr16	91380395	91380595	+	958.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	7712.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.08	6.29	5.7	0.8	10.64	21.01	8.64	1.09	4.33	16.07	1.0	0.63
Merged-chr10-98619340-3	chr10	98619232	98619432	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-267465.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	23.82	12.07	13.12	22.12	13.91	10.66	18.6	21.84	18.69	5.02	19.6	13.16
Merged-chr2-32912584-3	chr2	32912485	32912685	+	958.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146119, exon 5 of 14)	exon (NM_146119, exon 5 of 14)	36451.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	21.0	22.89	19.4	28.56	17.59	31.98	10.3	21.76	24.98	40.17	13.57	17.23
Merged-chr14-121427897-3	chr14	121427801	121428001	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-48671.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	12.11	10.82	14.83	17.7	29.46	22.58	24.91	19.09	37.96	15.57	43.72	21.62
Merged-chr1-120020586-3	chr1	120020493	120020693	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 1 of 13)	(GCTG)n|Simple_repeat|Simple_repeat	13613.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	20.59	32.95	18.25	41.02	28.23	17.25	26.57	25.51	20.65	15.57	13.57	18.17
Merged-chr18-37852296-3	chr18	37852185	37852385	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 25 of 26)	intron (NM_007858, intron 25 of 26)	2375.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	17.36	19.62	15.4	19.31	30.68	22.58	13.29	27.93	20.65	21.59	34.17	11.9
Merged-chr17-50576208-3	chr17	50576094	50576294	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	66647.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	36.75	18.36	17.68	22.12	15.96	25.4	14.62	32.05	9.83	20.59	20.1	11.28
Merged-chr11-68519970-3	chr11	68519897	68520097	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	L1MD2|LINE|L1	16978.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	14.94	14.59	13.12	15.69	9.41	16.62	15.94	14.07	15.74	26.61	25.12	7.21
Merged-chr1-107589957-3	chr1	107589842	107590042	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011459)	promoter-TSS (NM_011459)	-64.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	10.5	13.58	9.7	16.09	34.77	21.64	18.6	23.69	37.57	37.16	53.26	17.23
Merged-chr13-85507988-3	chr13	85507879	85508079	+	958.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218493.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	14.54	10.56	9.7	16.89	17.59	13.8	16.28	30.03	16.33	18.58	23.62	14.72
Merged-chr2-50907303-2	chr2	50907201	50907401	+	958.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2383.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	25.04	29.93	27.38	18.9	7.77	5.64	8.64	12.73	5.7	7.03	15.58	6.89
Merged-chr19-37474556-3	chr19	37474460	37474660	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	9306.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	24.23	20.88	25.67	32.18	18.82	14.42	17.27	14.02	33.04	19.58	17.08	18.48
Merged-chr10-96621022-3	chr10	96620901	96621101	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	4000.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	21.8	14.09	18.83	12.47	19.23	17.25	9.63	11.38	17.9	16.57	15.58	8.77
Merged-chr4-128689956-3	chr4	128689850	128690050	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	1212.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	17.36	17.61	22.82	14.48	24.55	20.38	17.94	24.36	26.55	18.08	14.07	17.54
Merged-chr16-44773850-3	chr16	44773762	44773962	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	8126.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	11.31	18.36	20.54	12.87	20.46	20.7	23.25	32.07	19.08	23.1	21.1	15.98
Merged-chr18-46313317-3	chr18	46313228	46313428	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	19.79	18.11	29.09	25.74	36.82	30.1	29.56	36.14	13.96	10.54	14.57	5.33
Merged-chr8-95140764-3	chr8	95140658	95140858	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1782.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	11.31	10.56	17.68	13.27	14.32	15.37	10.96	16.32	18.69	17.57	31.66	16.6
Merged-chr12-3237410-3	chr12	3237306	3237506	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015551, exon 2 of 7)	non-coding (NR_015551, exon 2 of 7)	1615.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	15.34	13.58	18.83	12.07	11.45	19.13	11.63	10.09	22.03	19.08	17.08	12.84
Merged-chr1-161252010-3	chr1	161251922	161252122	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-812.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	19.79	17.1	11.98	15.69	20.86	26.03	13.95	22.35	27.34	14.06	29.14	15.98
Merged-chr4-108461755-3	chr4	108461661	108461861	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 2 of 30)	intron (NM_175472, intron 2 of 30)	2335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	43.21	16.1	34.23	32.58	29.46	15.99	10.3	24.0	29.9	19.58	32.16	8.14
Merged-chr19-53311271-3	chr19	53311070	53311270	+	958.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360348)	promoter-TSS (NM_001360348)	-275.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.46	10.56	3.99	15.28	20.05	8.15	11.96	9.45	13.18	15.06	12.06	10.34
Merged-chr13-81793983-3	chr13	81793876	81794076	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007684, intron 4 of 4)	B4A|SINE|B4	10729.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	18.17	10.06	16.54	13.67	30.27	25.71	22.26	31.32	33.04	38.16	49.24	12.53
Merged-chr2-163587656-3	chr2	163587552	163587752	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14662.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	16.56	9.31	42.78	32.18	21.27	37.0	32.55	36.5	27.54	22.59	37.18	18.8
Merged-chr11-65515865-1	chr11	65515765	65515965	+	958.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	218967.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.0	0.0	2.85	3.62	16.77	11.92	14.95	28.18	1.18	0.5	0.5	1.25
Merged-chr5-90339788-3	chr5	90339690	90339890	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	26395.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	25.44	17.61	16.54	38.61	34.77	23.83	29.23	44.52	29.5	28.12	63.31	16.6
Merged-chr10-8029048-3	chr10	8028952	8029152	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-72929.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	18.57	16.1	25.1	34.19	18.41	8.78	7.97	23.33	6.49	23.1	32.66	17.86
Merged-chr11-85310792-2	chr11	85310697	85310897	+	958.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-457.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	10.09	16.85	9.7	12.87	9.0	23.52	6.98	10.21	15.34	13.05	13.57	15.04
Merged-chr16-49700098-3	chr16	49699994	49700194	+	958.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028680, intron 1 of 10)	intron (NM_028680, intron 1 of 10)	800.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	57.74	43.77	58.76	14.88	58.09	106.3	38.86	35.66	68.05	82.85	46.73	12.84
Merged-chr2-131427159-3	chr2	131427063	131427263	+	958.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-64699.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	16.96	13.58	30.8	7.64	40.5	31.67	8.64	17.1	23.6	22.09	9.55	13.47
Merged-chr1-186703696-3	chr1	186703610	186703810	+	958.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329107, intron 1 of 7)	intron (NM_001329107, intron 1 of 7)	2279.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	25.44	18.11	14.26	20.91	25.36	28.22	10.96	29.97	21.83	9.54	18.09	9.4
Merged-chr1-43535858-3	chr1	43535778	43535978	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90127.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	32.3	18.61	54.19	59.12	39.68	16.31	34.88	33.84	29.11	13.56	30.15	22.56
Merged-chrX-95444320-3	chrX	95444217	95444417	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175179, intron 1 of 1)	CpG	523.0	NM_175179	72345.0	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	20.59	10.82	25.1	16.89	18.41	20.7	25.24	23.13	15.54	15.06	29.65	26.63
Merged-chr19-46356914-3	chr19	46356800	46357000	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	20.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	30.69	22.13	18.83	12.07	29.05	39.51	21.92	16.77	40.91	50.21	43.21	11.59
Merged-chr8-117308442-3	chr8	117308339	117308539	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-40731.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	19.79	14.59	24.53	18.1	31.5	28.85	24.58	37.32	21.83	14.56	33.16	16.6
Merged-chr3-30592540-3	chr3	30592465	30592665	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7305.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	17.36	18.11	20.54	19.71	29.86	24.46	13.29	20.86	24.98	24.1	18.09	19.42
Merged-chr12-3874360-3	chr12	3874267	3874467	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-12123.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	11.31	15.34	23.39	23.33	18.41	22.89	20.59	25.68	29.9	18.08	33.16	10.02
Merged-chr4-130816085-3	chr4	130815963	130816163	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	23526.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	13.33	12.07	22.82	11.66	18.82	13.17	21.26	22.79	19.67	17.57	32.16	18.17
Merged-chr9-3025531-3	chr9	3025431	3025631	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	13212.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	25.84	28.93	24.53	19.31	26.18	14.74	29.23	128.13	35.6	42.18	33.16	38.85
Merged-chr2-156524270-3	chr2	156524184	156524384	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-23292.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	27.05	15.85	9.13	19.71	22.91	20.07	6.31	14.13	31.67	13.05	21.61	16.29
Merged-chr19-55792103-3	chr19	55792014	55792214	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50304.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	18.98	11.57	26.81	24.94	14.73	17.25	15.94	22.63	25.57	20.59	42.71	9.4
Merged-chr10-9876040-3	chr10	9875961	9876161	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	MTC|LTR|ERVL-MaLR	24979.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	16.15	13.83	25.1	27.75	22.5	13.8	19.6	25.07	21.83	13.56	25.63	15.04
Merged-chr16-92825402-3	chr16	92825312	92825512	+	958.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	662.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	10.9	11.32	22.25	18.5	9.82	12.23	18.6	16.46	19.28	16.57	20.1	14.72
Merged-chr3-52612327-3	chr3	52612217	52612417	+	958.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	95353.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	16.15	14.09	16.54	24.53	13.09	7.84	8.97	17.86	16.52	19.58	31.66	14.41
Merged-chr5-115260509-3	chr5	115260412	115260612	+	958.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	12383.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	16.96	11.07	14.83	16.09	17.59	26.03	26.57	55.15	14.95	13.05	44.22	16.6
Merged-chr11-117879025-3	chr11	117878937	117879137	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5511.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	20.19	20.37	22.82	13.27	32.32	17.87	14.62	30.87	10.62	19.58	28.64	15.04
Merged-chr4-101675854-3	chr4	101675754	101675954	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28071.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	13.73	9.56	31.38	25.74	24.55	30.42	29.23	46.57	37.37	29.62	31.66	27.88
Merged-chr10-79533802-3	chr10	79533734	79533934	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-47.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	11.31	9.81	12.55	4.02	17.18	15.05	8.64	9.08	12.98	12.55	15.58	8.77
Merged-chr8-41100488-1	chr8	41100388	41100588	+	958.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 1 of 13)	MTC|LTR|ERVL-MaLR	14179.0	NM_001286413	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	1.21	3.02	1.14	0.0	0.0	2.2	3.32	3.0	4.92	4.52	13.06	10.34
Merged-chr6-83647236-1	chr6	83647136	83647336	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	8880.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.65	2.01	1.14	2.41	3.68	1.25	8.3	7.35	1.97	2.51	1.0	5.01
Merged-chr13-9231630-3	chr13	9231533	9231733	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44892.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	9.29	15.34	22.82	18.5	4.91	12.23	28.9	18.48	23.41	23.1	50.75	21.62
Merged-chr2-164493692-3	chr2	164493550	164493750	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026797)	TTS (NM_026797)	-3875.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	51.28	46.53	30.23	32.98	40.91	80.9	37.54	18.36	19.28	15.57	16.58	5.95
Merged-chr11-117864920-3	chr11	117864827	117865027	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001085535, exon 4 of 4)	3' UTR (NM_001085535, exon 4 of 4)	4175.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	24.23	25.91	25.1	20.11	28.23	21.64	11.63	15.42	18.49	12.05	19.09	13.47
Merged-chr17-71020733-1	chr17	71020633	71020833	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083934, intron 1 of 36)	intron (NM_001083934, intron 1 of 36)	1176.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	12.11	7.04	5.7	6.84	6.55	13.48	14.28	9.36	5.11	13.05	6.53	4.7
Merged-chr12-83632784-1	chr12	83632684	83632884	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027349, intron 1 of 18)	CpG	550.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	17.36	11.57	4.56	12.87	13.91	13.8	17.61	7.4	15.34	12.05	14.07	13.78
Merged-chr5-90020298-3	chr5	90020184	90020384	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136950.0	NM_001081401	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	20.59	30.69	31.95	24.94	11.05	8.47	15.61	10.88	42.88	24.6	43.21	25.37
Merged-chr5-43745316-1	chr5	43745216	43745416	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159963, exon 11 of 11)	exon (NM_001159963, exon 11 of 11)	36833.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.4	0.5	1.14	1.61	4.09	1.88	7.97	17.07	2.36	0.5	0.0	1.88
Merged-chr11-17212272-1	chr11	17212172	17212372	+	958.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025443)	promoter-TSS (NM_025443)	379.0	NM_178909	103784.0	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	10.5	6.79	3.42	9.65	6.14	11.92	8.97	11.3	14.55	16.57	22.11	11.59
Merged-chr13-58067387-1	chr13	58067287	58067487	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35041.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	8.08	13.08	5.13	14.48	10.23	12.54	15.61	13.04	15.54	12.05	8.04	12.22
Merged-chr8-84501754-3	chr8	84501656	84501856	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252060, intron 3 of 47)	intron (NM_001252060, intron 3 of 47)	86392.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	27.86	27.42	45.07	24.13	49.91	43.9	37.54	58.54	6.88	18.58	10.55	17.23
Merged-chr4-108083582-3	chr4	108083464	108083664	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 10 of 15)	RSINE1|SINE|B4	-3793.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	10.5	12.58	8.56	23.73	20.86	20.38	23.25	36.76	32.65	20.08	38.19	24.12
Merged-chr13-52041539-3	chr13	52041444	52041644	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55197.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	16.56	9.31	9.7	15.28	24.96	21.95	16.94	25.09	38.75	36.15	34.17	18.48
Merged-chr10-5193675-1	chr10	5193575	5193775	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079686, intron 1 of 54)	URR1A|DNA|hAT-Charlie	1032.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	4.44	3.02	4.56	5.63	1.64	9.41	3.32	10.29	7.87	4.02	1.51	5.01
Merged-chr2-35505704-1	chr2	35505604	35505804	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44255.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.04	2.26	2.28	13.67	4.91	3.14	5.98	8.97	4.13	2.01	3.01	3.45
Merged-chr17-67193917-3	chr17	67193833	67194033	+	957.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160526.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	16.15	22.39	30.8	9.65	20.86	31.36	24.58	24.2	16.13	14.06	24.12	16.6
Merged-chr6-148645064-3	chr6	148644968	148645168	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-30759.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	25.84	11.57	25.67	14.08	21.27	14.11	16.28	19.46	21.64	19.58	22.11	8.77
Merged-chr2-118541048-3	chr2	118540943	118541143	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	3544.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	13.73	15.34	22.25	12.47	19.23	25.4	13.29	18.03	36.98	38.16	43.21	24.75
Merged-chr1-54920299-3	chr1	54920206	54920406	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	6081.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	10.09	12.58	14.26	13.27	21.68	23.52	16.61	31.18	22.62	18.08	23.62	12.84
Merged-chr1-171843102-3	chr1	171842954	171843154	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	3357.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	14.94	13.33	10.84	14.88	13.5	18.5	9.3	12.76	25.57	24.1	20.1	14.1
Merged-chr9-46013284-3	chr9	46013186	46013386	+	957.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357241)	promoter-TSS (NM_001357241)	466.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	16.56	10.82	5.7	14.08	9.41	5.02	11.63	13.74	14.55	18.08	28.64	13.78
Merged-chr17-83732988-3	chr17	83732918	83733118	+	957.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	B3A|SINE|B2	26855.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	12.92	13.58	10.84	6.44	8.59	21.64	10.96	16.99	26.36	12.05	28.64	20.05
Merged-chr8-72836069-2	chr8	72835974	72836174	+	957.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317391, intron 13 of 15)	intron (NM_001317391, intron 13 of 15)	74415.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	4.85	7.04	28.52	6.44	13.5	13.8	9.63	19.68	18.88	14.06	35.17	12.53
Merged-chr14-14068826-3	chr14	14068712	14068912	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52092.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	7.27	4.78	19.97	20.91	11.05	9.41	7.64	17.38	17.51	8.03	14.07	6.27
Merged-chr1-182707692-3	chr1	182707586	182707786	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	41494.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	16.15	27.92	33.09	30.97	7.36	5.33	12.62	11.86	30.68	16.57	19.6	24.12
Merged-chr11-106704153-3	chr11	106704047	106704247	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	11134.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	27.05	32.2	33.66	15.28	18.0	19.13	12.95	10.01	24.59	22.09	10.55	9.08
Merged-chr19-17359693-3	chr19	17359589	17359789	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-3022.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	23.02	16.85	44.5	21.72	20.05	18.81	21.92	21.62	15.54	14.06	17.08	10.02
Merged-chr2-150750830-3	chr2	150750716	150750916	+	957.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1735.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	19.38	15.34	13.12	26.14	20.46	20.7	17.27	39.42	28.72	18.58	42.21	17.86
Merged-chr13-58503795-3	chr13	58503693	58503893	+	957.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100450.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	25.84	31.69	45.07	45.45	44.18	34.18	29.56	45.93	30.49	13.05	40.7	29.13
Merged-chr8-72485858-2	chr8	72485752	72485952	+	957.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	6762.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	20.19	4.28	3.42	12.07	0.82	0.63	0.0	0.0	5.31	12.05	17.08	13.16
Merged-chr14-18331175-3	chr14	18331099	18331299	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009455, intron 1 of 5)	CpG	645.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	12.11	9.06	18.25	17.29	16.77	19.13	19.93	21.64	27.34	20.59	15.58	17.54
Merged-chr16-29947926-3	chr16	29947830	29948030	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31194.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	6.46	17.36	32.52	9.25	27.41	22.58	24.58	22.07	57.83	43.18	52.26	23.18
Merged-chr3-90125947-3	chr3	90125843	90126043	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	21811.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	22.61	17.1	42.78	32.18	18.82	26.03	16.61	24.06	38.35	24.6	43.21	10.65
Merged-chr13-69533453-3	chr13	69533331	69533531	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198600, intron 1 of 12)	CpG	433.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.48	13.33	4.56	10.05	13.5	12.23	19.6	12.0	11.01	16.07	14.07	8.46
Merged-chr12-101892303-3	chr12	101892203	101892403	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028446, intron 7 of 20)	intron (NM_028446, intron 7 of 20)	-20364.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	27.05	11.82	23.96	15.28	30.68	38.26	24.25	34.63	24.78	32.64	23.62	8.77
Merged-chr19-46339844-3	chr19	46339712	46339912	+	957.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1152.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	12.52	12.32	14.26	3.22	24.55	10.35	6.64	11.72	18.69	15.06	20.6	13.78
Merged-chr4-144980940-3	chr4	144980840	144981040	+	957.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87803.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	25.84	24.9	12.55	26.14	18.0	42.65	17.61	25.88	33.63	39.16	17.59	14.41
Merged-chr3-135826115-3	chr3	135826034	135826234	+	957.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135150, intron 1 of 8)	intron (NM_001135150, intron 1 of 8)	344.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	14.54	14.59	19.97	22.52	19.23	14.74	26.91	29.3	14.16	11.05	24.12	7.52
Merged-chr14-75025565-3	chr14	75025438	75025638	+	957.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	9511.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	13.33	16.6	21.68	8.85	13.91	27.28	16.28	16.85	22.03	32.64	20.6	24.12
Merged-chr11-60837968-3	chr11	60837849	60838049	+	957.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	7318.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	5.25	12.32	7.99	16.49	16.36	19.44	8.97	13.65	15.14	11.05	13.06	15.98
Merged-chr1-120256059-3	chr1	120255959	120256159	+	957.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	9221.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	15.75	9.06	19.4	22.12	37.23	21.64	39.53	29.89	33.24	18.08	25.63	36.34
Merged-chr14-79558030-3	chr14	79557931	79558131	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-29629.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	19.38	12.07	26.81	19.31	21.27	13.17	7.31	25.49	28.13	22.59	18.09	9.4
Merged-chr16-65470785-3	chr16	65470703	65470903	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-49826.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	12.52	9.31	20.54	12.87	19.23	16.62	9.3	20.24	12.19	12.55	17.59	13.47
Merged-chr15-83134908-3	chr15	83134807	83135007	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-12106.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	17.77	10.06	19.4	25.74	13.09	12.54	21.59	30.81	14.95	17.07	40.2	17.54
Merged-chr2-71041514-3	chr2	71041416	71041616	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	L1MC3|LINE|L1	14090.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	10.9	13.08	13.69	23.73	41.73	20.7	10.96	25.65	39.53	32.64	53.26	23.81
Merged-chr8-33492499-2	chr8	33492397	33492597	+	957.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8186.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	2.42	1.01	3.42	5.63	10.23	18.19	25.58	34.07	55.07	50.71	80.9	61.4
Merged-chr8-47674460-3	chr8	47674332	47674532	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023503, intron 1 of 1)	CpG	727.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	10.9	15.85	7.42	5.63	9.82	10.35	8.3	7.23	24.98	21.59	23.62	13.78
Merged-chrUn_JH584304-3592-1	chrUn_JH584304	3492	3692	+	957.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	56097.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	16.33	18.08	17.08	21.62
Merged-chr18-36230820-3	chr18	36230719	36230919	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33659.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	22.61	14.84	11.98	18.1	23.73	21.95	22.59	29.44	24.78	18.08	17.59	15.66
Merged-chr1-166429209-3	chr1	166429098	166429298	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19370.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	27.46	21.13	12.55	20.11	17.59	22.58	8.97	22.18	20.85	15.57	42.71	17.23
Merged-chr8-15519932-3	chr8	15519829	15520029	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	462276.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	56.13	68.42	30.8	28.15	14.73	18.19	17.27	4.32	9.24	22.59	7.03	11.9
Merged-chr8-61908635-3	chr8	61908524	61908724	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5930.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	11.71	14.09	13.12	20.91	28.64	18.19	15.94	44.47	17.7	15.57	15.58	10.96
Merged-chr1-42397338-1	chr1	42397238	42397438	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	297487.0	NR_027826	66297.0	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	11.31	11.57	25.1	26.14	0.82	0.0	0.0	0.0	2.75	0.0	0.0	0.63
Merged-chr3-84345166-3	chr3	84345062	84345262	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34759.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	12.11	11.82	13.12	16.89	23.32	21.64	17.27	30.62	26.55	24.1	51.76	13.78
Merged-chr2-52378587-3	chr2	52378481	52378681	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-39783.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	16.15	8.3	15.97	20.11	22.5	17.87	9.97	15.14	43.47	30.63	45.22	21.93
Merged-chr4-41358857-3	chr4	41358762	41358962	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	6899.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	20.19	20.12	34.23	16.89	21.27	21.95	15.61	15.62	22.62	26.61	16.58	10.34
Merged-chr2-58497174-2	chr2	58497065	58497265	+	957.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64245.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	14.94	14.59	23.39	19.31	8.59	9.72	5.98	12.93	5.7	11.55	15.58	6.27
Merged-chr4-145585175-2	chr4	145585077	145585277	+	957.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324416)	promoter-TSS (NM_001324416)	-23.0	NM_001324416	433801.0	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	-	predicted gene 13212	protein-coding	20.59	20.63	12.55	6.03	8.18	16.93	0.66	2.55	74.15	68.79	64.82	22.56
Merged-chr16-94239354-2	chr16	94239266	94239466	+	957.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	50925.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.27	4.28	6.28	6.03	3.27	10.66	2.99	7.93	14.36	17.07	19.6	11.59
Merged-chr10-99467560-5	chr10	99467466	99467666	+	957.628601	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141605.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	5.65	5.79	4.56	11.26	9.41	12.23	24.25	11.78	16.72	24.1	9.55	13.78
Merged-chr6-127330417-3	chr6	127330322	127330522	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22455.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	12.11	14.34	15.97	16.09	16.77	15.68	19.27	21.79	22.82	16.07	20.6	9.71
Merged-chr12-40469143-3	chr12	40469028	40469228	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23075.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	22.61	22.13	15.4	11.26	23.32	21.95	9.63	20.22	24.78	25.11	18.09	8.77
Merged-chr4-122887132-3	chr4	122887045	122887245	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-1069.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	10.5	11.32	16.54	14.88	20.86	16.93	12.62	20.92	26.75	27.62	20.1	15.04
Merged-chr3-108881130-3	chr3	108881032	108881232	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	8876.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	34.32	16.1	14.83	34.59	31.09	34.49	43.18	36.17	31.67	21.09	51.76	20.36
Merged-chr6-54958137-3	chr6	54958022	54958222	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	13539.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	16.96	14.34	13.69	11.26	15.96	24.46	20.59	23.8	42.29	30.13	42.71	23.49
Merged-chr15-103342627-3	chr15	103342522	103342722	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2536.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	36.34	15.34	12.55	13.67	21.27	30.1	4.32	15.62	28.91	19.08	21.1	7.83
Merged-chr14-65381734-3	chr14	65381641	65381841	+	957.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	23065.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	27.05	18.11	25.1	12.87	18.41	28.54	9.97	21.11	23.8	17.57	20.6	18.17
Merged-chr2-58534576-3	chr2	58534489	58534689	+	957.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	26821.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	25.04	14.09	21.11	26.14	29.46	21.95	25.58	27.79	14.36	10.54	18.59	11.28
Merged-chr6-30354950-3	chr6	30354863	30355063	+	957.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36057.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	10.5	16.35	14.83	20.11	21.68	15.05	19.6	16.21	20.26	8.03	21.1	12.22
Merged-chr7-34672154-3	chr7	34672059	34672259	+	957.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16650.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	15.75	21.63	24.53	24.13	22.91	34.18	16.61	24.42	34.22	25.11	34.67	10.34
Merged-chr7-25726172-3	chr7	25726083	25726283	+	957.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360789, exon 12 of 15)	exon (NM_001360789, exon 12 of 15)	-7130.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	29.48	36.22	24.53	12.07	33.96	46.1	25.24	28.71	26.16	42.68	28.64	12.53
Merged-chr2-58496800-3	chr2	58496708	58496908	+	957.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64602.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	19.38	16.6	27.95	28.15	10.64	8.47	10.3	13.01	21.64	7.03	21.61	6.27
Merged-chr11-80383858-3	chr11	80383720	80383920	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	541.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	9.29	13.33	11.98	6.44	10.23	12.23	11.96	6.62	20.06	14.56	16.08	10.34
Merged-chr9-22366751-1	chr9	22366651	22366851	+	957.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	22455.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	10.09	1.51	2.85	4.02	3.68	6.59	15.28	10.96	9.44	9.04	5.02	4.39
Merged-chr6-90494328-2	chr6	90494229	90494429	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31753.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	7.27	9.31	22.25	14.48	2.86	10.66	6.31	12.53	6.1	2.51	8.04	1.25
Merged-chrX-169795107-1	chrX	169795007	169795207	+	957.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	-15472.0	NR_003635	66747.0	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo	3.63	6.29	2.85	5.23	10.64	3.14	7.64	13.93	8.65	2.01	2.01	4.07
Merged-chr19-3719648-3	chr19	3719564	3719764	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11253.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	7.67	12.07	12.55	6.84	16.36	13.17	2.99	10.12	12.39	12.55	12.06	7.52
Merged-chr12-17467002-2	chr12	17466910	17467110	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77863.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	19.38	15.59	19.4	34.19	16.36	8.47	15.94	31.49	8.85	3.01	6.03	5.01
Merged-chr19-40638748-3	chr19	40638642	40638842	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21028.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	11.71	11.32	26.24	18.9	26.18	15.37	21.26	29.58	15.54	12.55	28.14	13.78
Merged-chr18-64527465-3	chr18	64527359	64527559	+	957.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10902.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	12.92	12.58	20.54	15.69	27.82	18.81	12.29	25.32	22.03	13.56	29.14	13.78
Merged-chr3-87151664-3	chr3	87151546	87151746	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23101.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	13.73	16.1	29.09	24.13	16.36	11.92	15.94	23.19	19.47	18.08	16.58	9.71
Merged-chr9-111290041-3	chr9	111289949	111290149	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18204.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	27.86	34.21	10.27	30.57	26.59	29.16	13.29	21.76	40.91	37.66	48.24	26.31
Merged-chr9-44480297-3	chr9	44480179	44480379	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2546.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	20.19	11.82	4.56	10.05	17.59	15.68	10.3	12.81	22.23	20.08	32.16	25.37
Merged-chr16-12091039-3	chr16	12090935	12091135	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	Tigger9b|DNA|TcMar-Tigger	106922.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	9.29	5.79	27.95	20.51	6.14	10.03	13.29	20.61	19.08	5.02	14.07	10.34
Merged-chr17-64471748-3	chr17	64471649	64471849	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	30943.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	14.94	4.02	17.11	18.5	4.91	5.64	11.29	16.74	15.74	5.02	14.57	14.1
Merged-chr3-36330836-3	chr3	36330726	36330926	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-108551.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	14.94	8.55	5.7	15.69	14.73	22.58	5.31	16.29	19.67	16.07	19.6	16.29
Merged-chr10-99190941-3	chr10	99190831	99191031	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	B3|SINE|B2	-72300.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	24.63	14.59	18.25	8.85	19.23	14.42	7.97	17.64	24.78	27.11	27.64	16.29
Merged-chr11-100369974-3	chr11	100369873	100370073	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13832.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	28.27	25.4	28.52	22.93	33.96	38.88	17.27	23.83	23.01	30.13	35.17	10.65
Merged-chr3-146655375-3	chr3	146655225	146655425	+	957.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4008.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	23.02	11.82	13.12	10.05	21.68	17.87	22.26	34.4	26.75	28.62	30.15	21.62
Merged-chr8-27058470-3	chr8	27058383	27058583	+	957.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15928.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	16.96	11.32	19.4	17.7	7.77	19.76	11.63	16.77	12.98	12.05	27.64	8.77
Merged-chr13-115148738-2	chr13	115148635	115148835	+	957.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46771.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	12.11	5.28	5.13	8.04	21.68	17.25	9.97	14.16	22.82	32.13	18.59	13.78
Merged-chr8-92881445-2	chr8	92881324	92881524	+	957.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 7 of 12)	intron (NM_001357375, intron 7 of 12)	-19971.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	5.65	4.53	6.85	2.41	4.91	15.37	3.65	8.92	42.68	38.16	29.65	9.71
Merged-chr4-3721673-2	chr4	3721569	3721769	+	957.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	L1MC1|LINE|L1	6705.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	5.25	16.35	15.97	2.41	27.82	19.76	8.97	19.21	4.13	7.03	2.01	7.52
Merged-chr9-55253857-6	chr9	55253769	55253969	+	957.4027710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	29756.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	15.34	4.53	7.99	0.8	12.27	25.4	2.66	6.95	11.21	9.54	7.03	3.76
Merged-chr13-51710917-3	chr13	51710823	51711023	+	957.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013660, intron 11 of 15)	intron (NM_013660, intron 11 of 15)	59215.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	16.15	16.1	29.09	19.31	19.64	22.89	14.28	24.42	33.44	23.6	19.6	10.96
Merged-chr9-61024915-3	chr9	61024810	61025010	+	957.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7841.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	24.23	24.15	26.24	10.05	21.27	21.64	20.59	20.61	19.47	27.11	33.67	12.22
Merged-chr16-89871679-3	chr16	89871562	89871762	+	957.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-53310.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	21.8	15.59	34.8	30.16	25.36	12.54	11.96	30.87	21.64	18.08	20.6	21.3
Merged-chr12-3871875-3	chr12	3871769	3871969	+	957.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-9625.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	15.34	15.34	17.11	11.66	22.5	21.64	23.58	22.88	29.9	24.6	35.68	10.96
Merged-chr12-100883380-3	chr12	100883274	100883474	+	957.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	16150.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	23.02	22.13	26.81	12.87	23.32	44.21	21.92	35.05	18.1	13.05	30.65	10.02
Merged-chr8-120576021-3	chr8	120575954	120576154	+	957.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 13 of 15)	intron (NM_001145896, intron 13 of 15)	13021.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	17.77	10.31	11.41	13.67	12.68	20.38	8.97	19.4	21.24	17.07	39.19	11.28
Merged-chr3-95988212-2	chr3	95988112	95988312	+	957.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_023320)	TTS (NM_023320)	2702.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	16.96	10.31	15.4	20.11	11.45	13.8	12.29	34.37	0.79	5.52	3.01	2.82
Merged-chr5-129864599-2	chr5	129864507	129864707	+	957.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026445)	TTS (NM_026445)	14481.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	13.73	11.32	15.4	10.46	20.46	19.76	18.6	18.59	3.74	1.51	3.01	2.19
Merged-chrX-167334789-2	chrX	167334691	167334891	+	957.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4220.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	6.46	5.53	18.25	9.65	18.0	17.56	11.29	16.57	23.41	11.05	21.1	10.96
Merged-chr5-123145450-1	chr5	123145350	123145550	+	957.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3257.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.65	4.78	9.13	3.62	3.27	14.42	14.28	9.14	7.08	5.52	12.56	6.27
Merged-chr2-128782395-3	chr2	128782273	128782473	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-35930.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	21.8	9.81	26.81	16.49	26.59	29.48	38.53	40.85	19.08	14.06	27.13	6.89
Merged-chr4-59096594-3	chr4	59096496	59096696	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61440.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	10.5	15.34	13.69	14.48	23.32	11.6	9.63	14.33	9.83	19.08	20.1	14.1
Merged-chrY-90744586-1	chrY	90744486	90744686	+	957.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	10464.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.81	0.0	0.0	0.0	0.82	1.57	0.0	0.03	36.39	42.68	41.2	12.22
Merged-chr10-121510058-3	chr10	121510007	121510207	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33857.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	11.31	5.53	14.83	9.25	24.55	20.07	22.26	20.72	12.0	12.55	21.1	10.34
Merged-chr17-56958046-3	chr17	56957960	56958160	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175731, intron 4 of 5)	intron (NM_175731, intron 4 of 5)	-22672.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	14.13	13.08	14.83	12.07	13.09	8.15	4.65	9.59	12.0	8.03	7.03	4.39
Merged-chr5-44227098-3	chr5	44226984	44227184	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-478.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	12.92	14.84	12.55	21.72	12.68	16.93	19.27	12.53	16.52	19.08	15.58	13.47
Merged-chr10-80932871-3	chr10	80932792	80932992	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008655)	TTS (NM_008655)	2801.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	27.86	49.8	17.68	10.46	25.77	38.88	27.9	9.67	43.27	50.71	28.64	12.84
Merged-chr11-119058173-3	chr11	119058068	119058268	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17255.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	19.79	16.85	15.97	12.47	31.91	53.93	22.59	16.96	28.13	27.11	26.13	15.66
Merged-chr16-20361901-3	chr16	20361800	20362000	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 24 of 29)	RLTR9E|LTR|ERVK	-36496.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	15.75	18.11	34.23	18.1	11.05	22.89	15.28	14.75	19.87	16.07	20.6	9.4
Merged-chr15-78803002-3	chr15	78802900	78803100	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130859)	promoter-TSS (NM_130859)	42.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	23.82	25.91	20.54	6.03	20.86	21.95	15.61	15.62	31.08	24.6	25.63	8.14
Merged-chr13-24800062-3	chr13	24799977	24800177	+	957.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1580.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	10.9	11.57	2.85	10.05	9.41	6.59	12.29	9.36	8.65	11.55	15.58	11.9
Merged-chr6-22358156-3	chr6	22358067	22358267	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2086.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	18.98	9.81	19.4	22.93	17.18	11.92	13.95	20.66	25.77	22.59	32.16	19.42
Merged-chr3-135424049-3	chr3	135423935	135424135	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	-602.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	14.94	14.59	27.95	22.12	14.73	16.93	10.63	21.9	31.08	13.05	35.68	26.0
Merged-chr1-151689234-3	chr1	151689134	151689334	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	65493.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	30.69	24.4	36.51	13.27	29.46	52.05	17.94	23.89	30.09	24.1	22.11	8.46
Merged-chr14-8215371-3	chr14	8215284	8215484	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	-864.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	16.96	16.85	6.85	10.46	40.5	41.39	20.93	43.04	45.63	48.2	29.65	32.89
Merged-chr17-46856841-3	chr17	46856753	46856953	+	957.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25440.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	12.92	10.82	11.41	13.27	11.05	25.09	13.95	15.0	32.26	29.62	25.63	19.11
Merged-chr17-36992498-3	chr17	36992400	36992600	+	957.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34-int|LTR|ERV1	-2996.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	24.23	17.86	13.12	37.0	15.55	13.48	23.58	30.56	13.96	13.56	20.1	16.29
Merged-chr2-152696951-3	chr2	152696853	152697053	+	957.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	9805.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	14.94	11.32	16.54	16.89	13.09	15.37	8.64	7.21	25.37	21.59	23.11	11.9
Merged-chr18-62172913-3	chr18	62172830	62173030	+	957.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7051.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	29.88	24.9	11.98	21.32	38.46	30.42	10.96	21.95	19.08	30.63	17.08	11.59
Merged-chr18-4325342-3	chr18	4325243	4325443	+	957.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	27610.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.27	12.58	35.37	15.28	11.45	29.79	25.91	20.58	41.89	35.65	38.69	21.3
Merged-chr2-11637288-3	chr2	11637194	11637394	+	957.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5498.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	14.13	12.32	22.25	24.53	16.36	10.35	11.63	20.38	21.05	16.57	31.15	12.53
Merged-chr2-22811630-3	chr2	22811526	22811726	+	957.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	37299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	12.52	10.31	8.56	22.52	26.18	36.37	21.92	23.5	17.51	20.08	32.16	19.42
Merged-chr5-125352091-3	chr5	125352002	125352202	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-11008.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	12.52	12.32	11.41	7.64	11.86	18.81	9.3	12.06	30.49	26.11	30.65	14.72
Merged-chr6-31412697-3	chr6	31412613	31412813	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013791, intron 1 of 17)	B3|SINE|B2	13885.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	11.31	8.05	6.28	6.44	13.5	8.78	12.29	13.93	15.34	8.03	20.6	12.22
Merged-chr19-56455890-3	chr19	56455765	56455965	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5772.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	20.19	25.91	19.97	14.88	14.73	14.11	11.29	11.07	14.36	11.05	13.06	6.27
Merged-chr5-123891191-3	chr5	123891052	123891252	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11132.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	19.79	19.37	16.54	16.89	18.0	24.77	12.62	14.69	24.98	14.06	14.07	10.65
Merged-chr16-11017987-3	chr16	11017868	11018068	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9070.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	34.73	27.92	30.23	13.67	21.27	66.48	22.59	17.55	45.04	45.19	33.67	18.8
Merged-chr11-97592060-1	chr11	97591960	97592160	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6451.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	7.67	5.53	10.27	3.62	10.64	16.31	10.3	11.3	3.74	3.51	11.56	5.95
Merged-chr1-152787049-4	chr1	152786913	152787113	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-13140.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	3.63	10.56	12.55	3.62	9.41	17.56	18.93	9.2	19.08	18.58	20.6	12.84
Merged-chr13-5592632-3	chr13	5592526	5592726	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265466.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	19.79	7.8	26.24	36.6	61.77	42.96	51.82	80.64	33.83	42.18	56.78	25.06
Merged-chr13-83072136-2	chr13	83071992	83072192	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-373759.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.81	5.53	6.28	14.48	13.5	4.08	10.3	15.9	6.49	3.51	5.02	4.07
Merged-chr3-27984589-3	chr3	27984502	27984702	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	431.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	23.02	17.86	21.68	27.75	16.36	15.68	16.28	35.44	25.37	14.06	21.1	17.86
Merged-chr4-35223214-2	chr4	35223124	35223324	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2656.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.27	11.32	13.12	8.45	12.68	27.91	12.62	4.43	23.21	12.55	16.58	7.83
Merged-chr4-58288968-3	chr4	58288844	58289044	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	2982.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	25.04	25.4	30.23	36.6	48.68	34.18	53.15	36.79	11.41	3.51	10.55	7.52
Merged-chr18-39666354-1	chr18	39666254	39666454	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107143.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.04	1.26	5.13	6.44	12.68	15.68	15.94	18.39	3.34	2.51	9.04	4.39
Merged-chr7-72166407-1	chr7	72166307	72166507	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 14 of 22)	intron (NM_001024703, intron 14 of 22)	140188.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	5.25	2.01	5.13	3.62	21.27	14.11	17.94	8.3	2.16	3.01	1.51	2.51
Merged-chr10-30749739-3	chr10	30749629	30749829	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	53597.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	20.19	29.68	17.68	8.45	15.14	50.17	17.61	12.42	25.57	24.1	29.65	10.02
Merged-chr8-108764979-3	chr8	108764841	108765041	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	50297.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	12.11	18.36	23.96	27.35	17.18	24.15	24.58	18.14	20.46	25.11	27.64	9.08
Merged-chr15-41639884-2	chr15	41639776	41639976	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149119.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.44	4.53	9.13	33.38	25.36	14.11	23.58	50.92	15.54	11.05	30.15	13.16
Merged-chr7-24380054-1	chr7	24379954	24380154	+	957.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163510, intron 4 of 8)	MIR|SINE|MIR	9791.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	2.42	3.27	9.13	1.61	4.09	2.82	4.32	4.26	19.08	13.05	15.07	18.17
Merged-chr10-111439702-1	chr10	111439602	111439802	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BC1_Mm|scRNA|scRNA	-33525.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.04	2.52	3.99	7.64	4.5	3.76	7.31	12.5	5.31	10.54	7.54	5.33
Merged-chr19-22916897-3	chr19	22916807	22917007	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	166302.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	6.86	5.53	14.26	14.48	29.05	26.03	39.86	36.36	24.0	24.6	44.72	23.49
Merged-chrX-102079206-1	chrX	102079106	102079306	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163610, exon 6 of 8)	exon (NM_001163610, exon 6 of 8)	-7899.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	2.83	4.02	12.55	3.62	2.45	3.76	11.96	7.91	7.08	7.03	2.51	1.57
Merged-chr18-4349859-3	chr18	4349830	4350030	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	3023.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.44	7.29	5.7	12.47	12.68	10.66	8.64	13.32	10.42	14.06	21.1	7.52
Merged-chr11-68407457-3	chr11	68407370	68407570	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20644.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	10.5	9.31	23.39	13.67	21.68	18.5	22.92	34.96	21.05	22.09	27.13	21.93
Merged-chr6-99205377-3	chr6	99205270	99205470	+	956.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	61145.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	16.56	14.09	15.4	22.12	20.46	28.54	12.95	22.49	19.28	24.1	22.11	8.77
Merged-chr9-35541674-3	chr9	35541556	35541756	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013932)	TTS (NM_013932)	16814.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	24.63	31.94	27.95	37.81	23.73	31.04	16.94	34.15	22.23	16.07	20.6	9.71
Merged-chr8-71908703-3	chr8	71908629	71908829	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166645, exon 1 of 3)	5' UTR (NM_001166645, exon 1 of 3)	123.0	NM_001166645	382019.0	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	Gm15468	zinc finger protein 882	protein-coding	19.38	13.83	13.69	16.89	20.86	17.25	26.57	14.92	19.47	21.59	23.62	14.1
Merged-chr11-44540444-3	chr11	44540320	44540520	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 3 of 5)	MTD|LTR|ERVL-MaLR	21043.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	11.71	21.38	26.81	28.15	18.82	20.7	8.97	22.63	20.85	24.6	33.16	15.98
Merged-chr11-86618753-3	chr11	86618652	86618852	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-34594.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	37.55	30.69	35.94	16.89	63.0	91.88	37.54	12.48	86.15	90.38	71.86	20.05
Merged-chr6-122596766-3	chr6	122596687	122596887	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	5657.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	32.3	28.93	26.81	12.07	39.68	50.49	22.92	24.93	54.48	58.75	81.4	26.63
Merged-chr7-125581496-3	chr7	125581380	125581580	+	956.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21949.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	28.27	26.66	33.09	8.45	48.27	78.39	54.81	72.36	29.5	24.6	32.66	15.35
Merged-chr8-70354205-3	chr8	70354110	70354310	+	956.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-931.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	31.9	31.19	17.11	16.09	22.09	24.46	17.61	16.23	33.63	17.07	35.68	19.42
Merged-chr13-47265371-3	chr13	47265278	47265478	+	956.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71375.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	8.48	10.31	15.4	16.09	24.96	26.97	19.93	31.6	27.34	20.08	34.67	19.11
Merged-chr12-102439226-2	chr12	102439119	102439319	+	956.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	594.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	14.94	20.37	16.54	26.55	20.46	25.71	20.26	16.63	30.88	34.14	37.69	10.65
Merged-chr9-24505263-3	chr9	24505182	24505382	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2142.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	10.5	15.34	29.66	20.11	18.41	12.54	17.94	12.11	22.23	20.59	37.69	19.74
Merged-chrX-71984584-3	chrX	71984477	71984677	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003243, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	-7272.0	NM_007724	12789.0	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	14.13	10.56	34.8	12.07	18.0	16.93	12.29	25.46	24.78	21.59	25.12	19.11
Merged-chr2-11713646-3	chr2	11713544	11713744	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	RLTR17|LTR|ERVK	7932.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	30.69	26.16	31.95	12.47	24.55	25.09	15.94	16.49	46.03	44.69	52.76	20.99
Merged-chr7-79721514-3	chr7	79721425	79721625	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001113471, exon 9 of 9)	exon (NM_001113471, exon 9 of 9)	-7339.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	11.31	10.56	17.11	4.02	15.55	12.54	11.29	12.42	7.08	17.07	21.61	12.22
Merged-chr13-64172312-3	chr13	64172208	64172408	+	956.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019986, intron 2 of 7)	intron (NM_019986, intron 2 of 7)	10442.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	16.96	5.28	15.4	14.48	4.09	8.15	10.96	15.67	18.49	9.54	23.62	12.53
Merged-chr9-111501856-2	chr9	111501747	111501947	+	956.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62766.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	16.96	13.33	22.82	23.33	10.64	8.47	7.97	15.22	0.39	1.0	0.5	0.31
Merged-chr10-43703264-4	chr10	43703156	43703356	+	956.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-42902.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	9.29	8.3	13.12	8.85	8.18	12.54	10.96	12.08	22.82	13.05	18.59	9.71
Merged-chr12-113216075-2	chr12	113215947	113216147	+	956.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30144.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	16.15	8.05	19.97	4.42	10.64	13.8	12.62	13.6	3.15	5.02	6.03	2.19
Merged-chr14-98817203-2	chr14	98817100	98817300	+	956.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	228936.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	17.36	11.32	14.83	25.34	28.64	44.53	21.59	49.23	4.52	8.54	15.07	5.01
Merged-chr1-138928959-2	chr1	138928867	138929067	+	956.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34742.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.81	6.79	6.85	15.69	27.41	15.37	16.61	20.07	14.95	24.6	22.11	10.02
Merged-chr4-88696630-3	chr4	88696548	88696748	+	956.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5380.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	14.94	14.09	13.12	9.65	13.09	25.71	8.64	16.74	17.31	24.1	17.59	13.16
Merged-chr17-25140456-2	chr17	25140334	25140534	+	956.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	3803.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	2.83	7.55	3.99	0.4	14.32	32.93	13.95	8.94	33.44	36.65	21.61	16.92
Merged-chr14-103016108-3	chr14	103016005	103016205	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	17698.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	36.75	38.74	30.8	13.27	30.68	74.0	43.18	27.45	44.45	49.21	40.2	15.98
Merged-chr5-67426722-3	chr5	67426629	67426829	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164806, intron 1 of 4)	CpG	1070.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	10.9	11.32	18.25	13.67	21.68	12.23	17.94	31.85	18.1	10.04	18.59	15.66
Merged-chr3-84843019-3	chr3	84842912	84843112	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	RLTR31B2|LTR|ERVK	-21133.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	13.33	11.57	13.69	20.51	18.82	27.28	11.96	14.27	23.21	14.56	34.67	11.59
Merged-chr15-75704185-3	chr15	75704083	75704283	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008164)	promoter-TSS (NM_008164)	-105.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	10.5	13.58	15.97	17.29	17.59	14.11	15.61	12.84	24.98	27.62	30.15	10.96
Merged-chr10-16412454-3	chr10	16412360	16412560	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	620683.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	13.73	16.85	20.54	23.33	9.41	11.92	20.59	24.08	23.8	26.11	49.24	27.25
Merged-chr12-113152029-3	chr12	113151899	113152099	+	956.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007763)	promoter-TSS (NM_007763)	-13.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	20.59	9.56	2.85	16.49	15.96	15.05	8.64	13.43	12.0	13.56	11.05	4.39
Merged-chr10-5288493-3	chr10	5288380	5288580	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93773.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	19.79	10.06	30.8	41.83	51.55	43.9	31.56	55.4	19.47	22.09	37.18	28.82
Merged-chr18-35022479-3	chr18	35022372	35022572	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68121.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	18.17	16.35	30.8	11.66	30.68	17.87	21.59	16.77	18.49	23.1	30.65	25.06
Merged-chr7-15921948-3	chr7	15921812	15922012	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	459.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	24.63	21.63	12.55	20.51	30.68	32.93	25.58	18.53	20.46	22.09	26.63	12.53
Merged-chr16-22357982-3	chr16	22357889	22358089	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63001.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	18.98	15.09	13.12	13.27	20.86	27.59	6.98	24.14	25.37	20.08	37.18	16.92
Merged-chr1-151572024-3	chr1	151571919	151572119	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	646.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	24.23	24.9	28.52	14.88	16.77	50.8	16.94	7.32	34.22	43.68	18.09	6.89
Merged-chr1-180402682-3	chr1	180402567	180402767	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-72118.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	10.5	13.83	13.12	14.88	20.86	21.01	16.28	9.79	28.32	30.63	22.61	14.1
Merged-chr1-77826363-3	chr1	77826265	77826465	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-311277.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	12.52	10.06	18.83	20.11	24.96	21.64	35.21	38.61	39.14	31.13	54.77	24.43
Merged-chr1-171231087-3	chr1	171230974	171231174	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 2 of 4)	intron (NM_010185, intron 2 of 4)	3275.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	31.5	19.37	10.84	4.02	18.82	19.13	16.94	12.5	27.34	48.2	20.1	17.86
Merged-chr13-107892145-3	chr13	107892046	107892246	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2082.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	28.27	15.34	16.54	19.31	24.14	23.83	8.97	13.51	17.7	21.59	20.6	23.18
Merged-chr9-116166397-3	chr9	116166280	116166480	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	8983.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	29.48	25.66	29.09	23.33	21.27	42.96	26.91	25.6	18.88	11.55	13.57	15.04
Merged-chr5-54053654-4	chr5	54053593	54053793	+	956.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	55170.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	6.06	10.56	15.97	8.04	6.55	8.47	9.3	10.23	12.0	11.05	16.58	5.01
Merged-chr7-66309542-4	chr7	66309453	66309653	+	956.736084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	MER89|LTR|ERV1	72171.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	7.67	11.82	13.69	8.45	9.0	18.5	8.3	9.22	16.52	9.54	13.06	9.71
Merged-chr6-50536696-3	chr6	50536605	50536805	+	956.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29769.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	9.29	13.58	24.53	20.51	16.77	16.31	13.29	19.49	12.98	18.08	20.1	10.96
Merged-chr10-80694811-3	chr10	80694719	80694919	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	7001.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	24.23	18.11	19.97	14.48	27.82	44.21	7.31	12.2	39.93	31.13	28.14	33.83
Merged-chr12-86796030-3	chr12	86795921	86796121	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61652.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	13.33	15.34	14.83	14.08	22.5	19.76	13.29	9.56	26.36	26.11	24.62	14.1
Merged-chr15-73137567-3	chr15	73137474	73137674	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 3 of 18)	intron (NM_153178, intron 3 of 18)	47162.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	15.75	1.01	17.68	13.27	12.27	7.84	11.63	8.61	14.95	11.55	9.04	18.8
Merged-chr12-52120467-3	chr12	52120367	52120567	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	22721.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	16.56	12.58	19.4	21.32	8.18	12.23	11.63	19.23	16.92	18.58	28.14	20.36
Merged-chr9-123722902-3	chr9	123722802	123723002	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5277.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	43.21	26.41	22.82	11.66	26.59	47.35	20.26	13.12	39.93	43.18	35.68	15.98
Merged-chr17-35241131-3	chr17	35241035	35241235	+	956.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019693)	promoter-TSS (NM_019693)	-611.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	26.65	28.93	11.98	15.28	27.0	21.01	6.64	9.93	30.88	32.13	20.1	9.71
Merged-chr2-180043166-3	chr2	180043065	180043265	+	956.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	682.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	14.13	6.79	19.4	7.64	13.5	20.38	10.3	14.33	24.39	21.59	19.6	15.35
Merged-chr7-114461826-3	chr7	114461718	114461918	+	956.695251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	46564.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	7.67	14.09	9.7	16.49	6.95	7.21	11.96	11.69	18.69	20.59	23.11	21.62
Merged-chr5-86118826-3	chr5	86118685	86118885	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172712, intron 31 of 32)	URR1B|DNA|hAT-Charlie	47039.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	11.71	8.05	18.25	17.29	17.18	12.86	14.28	14.24	19.08	26.61	13.57	12.84
Merged-chr3-146642086-1	chr3	146641986	146642186	+	956.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045949, exon 1 of 4)	non-coding (NR_045949, exon 1 of 4)	154.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	3.23	3.27	3.99	3.62	15.96	4.39	12.29	15.5	6.88	8.03	8.54	1.88
Merged-chr1-159201425-3	chr1	159201302	159201502	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-30798.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	16.96	6.54	21.68	5.23	22.5	15.99	20.59	21.08	16.13	13.56	35.68	12.53
Merged-chrUn_JH584304-2362-1	chrUn_JH584304	2262	2462	+	956.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57327.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.98	31.13	17.08	22.87
Merged-chr14-45050333-3	chr14	45050243	45050443	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62232.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	26.25	16.1	19.97	30.97	26.18	22.58	22.59	22.91	26.75	13.56	27.64	14.72
Merged-chr17-87023621-3	chr17	87023502	87023702	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008838, intron 2 of 5)	intron (NM_008838, intron 2 of 5)	1799.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	17.77	17.1	34.23	25.74	19.23	10.35	20.26	22.65	73.76	51.72	85.42	39.78
Merged-chr10-22700105-3	chr10	22700007	22700207	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	29325.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	13.73	23.9	19.97	13.27	20.46	16.31	15.28	29.72	17.11	6.03	18.59	11.9
Merged-chr12-8260462-2	chr12	8260363	8260563	+	956.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172401, intron 4 of 6)	intron (NM_172401, intron 4 of 6)	41491.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	7.27	12.07	17.68	17.29	16.36	10.98	10.63	14.69	7.08	5.52	17.59	5.64
Merged-chr1-170912422-2	chr1	170912309	170912509	+	956.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029984, intron 2 of 5)	intron (NM_001029984, intron 2 of 5)	532.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	4.04	6.04	5.13	6.44	16.77	19.44	9.3	9.73	7.08	20.59	17.08	9.08
Merged-chr1-166921144-2	chr1	166921044	166921244	+	956.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78586.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	2.83	5.28	6.85	0.8	0.0	8.15	11.29	15.9	25.37	8.03	23.11	3.45
Merged-chr12-77270895-3	chr12	77270789	77270989	+	956.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045554, intron 1 of 11)	MTD|LTR|ERVL-MaLR	32150.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	29.07	31.94	7.99	39.42	29.86	21.64	6.98	26.94	33.44	16.07	41.71	21.3
Merged-chr14-21654036-3	chr14	21653933	21654133	+	956.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017479, intron 12 of 16)	MTD|LTR|ERVL-MaLR	60543.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	13.33	13.83	23.39	20.11	13.09	22.26	27.57	31.32	18.29	12.55	19.09	18.48
Merged-chr2-165881091-3	chr2	165880945	165881145	+	956.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	1233.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	9.69	9.06	15.4	6.84	9.41	5.02	3.32	10.21	12.19	9.54	4.52	10.65
Merged-chr10-10555382-3	chr10	10555282	10555482	+	956.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2825.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	31.09	23.14	11.98	10.46	40.5	53.31	20.93	32.27	37.37	53.73	34.17	17.23
Merged-chr6-97417110-3	chr6	97417015	97417215	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	42171.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	14.54	15.59	13.12	7.24	23.32	37.0	20.93	19.99	30.09	28.62	32.66	17.86
Merged-chr10-59589579-3	chr10	59589477	59589677	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27115.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	13.73	12.07	19.4	13.27	19.23	26.65	20.26	27.39	40.52	31.63	45.22	20.99
Merged-chr6-89289426-3	chr6	89289308	89289508	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3683.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	14.54	5.53	15.97	10.46	13.09	21.95	17.27	7.54	24.0	25.11	27.64	17.86
Merged-chr5-96222111-3	chr5	96221923	96222123	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039084, intron 2 of 6)	MLT1H|LTR|ERVL-MaLR	11908.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	2.83	10.56	3.42	11.66	7.77	17.25	16.94	15.93	9.44	15.06	14.57	17.23
Merged-chr12-112619229-3	chr12	112619154	112619354	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-793.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	24.23	19.12	23.96	11.66	15.96	14.74	4.32	21.79	21.24	12.05	23.11	15.98
Merged-chr8-67813790-3	chr8	67813683	67813883	+	956.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	4512.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	9.29	11.57	34.8	16.89	20.86	18.81	24.58	38.83	26.75	21.09	21.1	10.02
Merged-chr3-107106234-3	chr3	107106132	107106332	+	956.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	4665.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	14.94	11.82	29.66	9.65	29.46	16.31	33.22	43.85	31.27	18.08	25.12	13.78
Merged-chr9-14523824-2	chr9	14523725	14523925	+	956.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23206.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	2.83	8.3	6.28	11.26	4.09	10.98	4.65	7.77	14.55	7.03	14.57	9.71
Merged-chr7-74497392-3	chr7	74497284	74497484	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57396.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	14.13	15.59	22.82	21.72	11.86	13.17	25.58	23.75	40.32	18.08	34.17	29.13
Merged-chr9-58542021-2	chr9	58541916	58542116	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1076.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	16.56	13.33	5.7	7.24	11.86	23.83	17.94	17.47	10.62	6.53	8.04	5.64
Merged-chr11-3178075-2	chr11	3177975	3178175	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	15388.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	18.17	26.16	12.55	14.88	20.86	13.17	28.57	27.17	0.0	0.0	0.0	0.0
Merged-chr10-98805242-3	chr10	98805144	98805344	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109398.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	14.54	11.07	26.24	24.94	10.64	15.37	8.97	27.08	10.82	5.52	21.1	15.98
Merged-chr6-6248608-1	chr6	6248508	6248708	+	956.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_136906)	promoter-TSS (NR_136906)	-51.0	NR_136906	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	5.25	2.01	0.0	3.22	13.91	11.29	22.26	30.11	7.87	9.04	8.54	15.04
Merged-chr5-121196959-3	chr5	121196864	121197064	+	956.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5567.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	27.05	15.09	41.07	11.26	26.18	27.91	11.96	11.78	28.52	25.11	28.64	15.66
Merged-chr15-62060127-3	chr15	62060037	62060237	+	956.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	20880.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	19.38	8.3	22.25	34.19	21.27	13.48	32.55	46.79	26.95	33.64	31.66	25.69
Merged-chr18-36733730-3	chr18	36733632	36733832	+	956.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-1338.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	15.75	13.33	37.08	14.08	29.46	20.07	24.58	15.73	26.75	35.65	34.67	7.83
Merged-chr10-21847252-3	chr10	21847184	21847384	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34900.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.27	14.34	36.51	12.87	32.73	51.11	33.22	52.37	28.13	31.63	28.64	17.23
Merged-chr13-47217455-3	chr13	47217344	47217544	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	23441.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	16.96	13.83	22.82	17.7	30.68	29.79	21.92	34.57	16.33	22.09	12.56	11.28
Merged-chr2-170160351-3	chr2	170160262	170160462	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17687.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	21.0	14.59	11.98	22.52	24.14	21.95	13.62	24.76	30.29	33.64	34.67	19.74
Merged-chr12-40788990-3	chr12	40788882	40789082	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-235108.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	20.59	11.57	37.65	30.57	26.18	15.05	23.58	39.25	34.22	20.08	31.66	12.53
Merged-chr1-180246363-3	chr1	180246256	180246456	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011183)	promoter-TSS (NM_011183)	-406.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	10.09	14.59	20.54	21.72	14.32	18.81	18.27	29.66	11.6	21.09	32.16	13.47
Merged-chr16-90259967-3	chr16	90259866	90260066	+	956.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	24520.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	29.07	17.61	15.4	30.97	25.36	25.4	24.25	31.21	30.68	14.56	29.14	8.46
Merged-chr3-19215899-3	chr3	19215800	19216000	+	956.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	27605.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	16.56	16.6	20.54	9.25	48.27	37.0	35.87	57.34	50.75	24.6	60.8	31.01
Merged-chr10-19122410-3	chr10	19122299	19122499	+	956.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19350.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	31.9	16.1	35.37	45.05	42.14	34.18	35.21	50.78	12.98	10.04	32.66	13.47
Merged-chr11-98217128-3	chr11	98217006	98217206	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	13801.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	21.8	18.61	15.4	10.86	8.18	20.7	3.32	6.9	22.42	12.55	12.06	11.28
Merged-chr1-154074291-3	chr1	154074217	154074417	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126870.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	17.36	8.05	21.68	18.1	18.82	19.13	17.27	16.71	13.96	21.09	24.62	13.16
Merged-chr11-110268611-3	chr11	110268487	110268687	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_147219)	TTS (NM_147219)	-16811.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	34.73	30.18	11.41	37.4	9.82	4.39	16.94	5.55	9.24	16.07	13.06	6.58
Merged-chr8-61540031-3	chr8	61539929	61540129	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	51140.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	14.54	12.58	11.98	22.93	22.5	31.04	17.94	30.03	43.27	29.12	58.29	16.6
Merged-chr7-106612909-3	chr7	106612806	106613006	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277180, intron 2 of 2)	intron (NM_001277180, intron 2 of 2)	31739.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	28.27	17.61	30.23	37.81	36.0	30.42	16.61	45.45	12.19	16.07	15.07	16.29
Merged-chr9-40397286-3	chr9	40397181	40397381	+	956.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-20864.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	11.71	12.58	11.98	22.93	21.27	14.11	20.26	20.5	15.14	7.53	20.1	12.22
Merged-chr13-117025780-5	chr13	117025670	117025870	+	956.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081009)	promoter-TSS (NM_001081009)	-254.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	9.29	17.61	2.28	7.64	22.09	14.74	13.62	7.49	13.96	20.59	13.06	10.34
Merged-chr1-177982746-3	chr1	177982660	177982860	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8638.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	24.23	20.88	24.53	16.09	9.0	22.89	13.62	20.47	21.44	17.07	15.07	18.17
Merged-chr17-35220777-3	chr17	35220624	35220824	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010909, exon 4 of 4)	exon (NM_010909, exon 4 of 4)	-14286.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.02	14.09	9.13	7.24	4.09	15.99	8.97	6.73	18.49	11.55	4.52	7.21
Merged-chr11-69663388-3	chr11	69663292	69663492	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	349.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	21.0	16.1	17.11	11.26	16.77	20.38	10.96	11.58	25.18	29.62	27.64	14.72
Merged-chr15-75884277-3	chr15	75884184	75884384	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001282443, exon 14 of 14)	exon (NM_001282443, exon 14 of 14)	4439.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	13.33	19.62	20.54	9.25	20.46	19.13	11.63	15.14	30.49	20.59	23.62	18.48
Merged-chr4-141664188-3	chr4	141664089	141664289	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-74.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	19.79	15.59	9.13	22.12	11.45	21.32	13.95	22.35	20.46	15.57	25.63	15.98
Merged-chr7-68130099-3	chr7	68130000	68130200	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134133.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	16.15	17.36	15.4	16.89	27.82	32.93	8.64	31.46	19.67	22.59	35.17	21.62
Merged-chr15-5242439-3	chr15	5242330	5242530	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008965, exon 2 of 3)	exon (NM_008965, exon 2 of 3)	1757.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	9.29	10.06	13.69	13.67	13.09	15.99	14.62	12.76	15.14	13.56	25.12	15.66
Merged-chr4-149167315-3	chr4	149167253	149167453	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081274)	promoter-TSS (NM_001081274)	-648.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	14.94	14.34	23.96	13.67	14.32	18.5	4.65	11.5	18.29	14.06	13.57	7.83
Merged-chr1-131972671-3	chr1	131972579	131972779	+	956.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2070.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	15.75	10.31	21.68	28.96	10.64	12.23	17.61	33.11	16.33	11.55	22.11	21.93
Merged-chr13-20180759-4	chr13	20180501	20180701	+	956.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	90094.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	14.54	9.56	4.56	7.64	14.32	3.76	8.97	10.23	11.01	16.57	14.07	10.96
Merged-chr17-29837674-3	chr17	29837608	29837808	+	956.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 13 of 15)	intron (NM_001081160, intron 13 of 15)	50174.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	13.73	4.53	18.25	14.48	12.68	19.44	4.98	21.2	20.26	7.53	17.08	19.11
Merged-chr1-165663933-3	chr1	165663836	165664036	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178593, intron 2 of 6)	intron (NM_178593, intron 2 of 6)	-29395.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	13.33	15.09	11.98	14.48	23.73	25.4	18.93	35.58	36.58	37.66	31.66	22.24
Merged-chr13-23446029-6	chr13	23445926	23446126	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15009.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	4.85	8.05	5.7	6.03	9.41	11.92	10.63	7.65	15.93	10.04	21.61	13.78
Merged-chr15-50779855-3	chr15	50779741	50779941	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109208.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	31.09	8.55	21.11	14.88	44.59	31.67	28.9	55.57	34.62	26.61	38.69	14.1
Merged-chr14-54606031-3	chr14	54605928	54606128	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028890)	promoter-TSS (NM_028890)	-120.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	21.0	22.13	13.69	16.89	30.27	31.36	20.93	23.97	27.73	39.67	41.2	16.29
Merged-chr5-99267529-3	chr5	99267419	99267619	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14592.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	17.77	14.09	15.97	12.47	18.82	34.49	18.6	28.85	20.46	16.57	22.61	10.02
Merged-chr16-93918528-3	chr16	93918438	93918638	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019500)	TTS (NM_019500)	11029.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	15.34	13.83	13.12	9.25	20.86	15.99	5.98	9.67	36.19	33.14	47.74	20.68
Merged-chr10-117872824-3	chr10	117872701	117872901	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26827.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	9.69	9.31	15.4	17.29	22.5	23.83	32.55	33.67	36.39	20.08	27.13	23.81
Merged-chr3-9556535-2	chr3	9556437	9556637	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	53548.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	26.65	14.09	25.1	15.28	7.77	25.71	16.28	18.34	7.28	4.52	3.01	5.64
Merged-chr2-38485129-2	chr2	38485031	38485231	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26566.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	20.59	11.57	11.41	18.5	4.09	9.41	6.98	14.47	12.59	11.55	20.1	16.29
Merged-chr5-130718603-2	chr5	130718502	130718702	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021371, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	269810.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	18.57	16.85	25.67	12.87	20.86	16.93	15.28	27.84	15.74	7.03	10.05	3.13
Merged-chr7-34126077-3	chr7	34125954	34126154	+	956.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207212, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	7214.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	19.79	14.09	34.23	24.13	21.27	11.29	19.93	40.79	11.01	3.01	19.09	14.72
Merged-chr6-67042003-3	chr6	67041903	67042103	+	956.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-4596.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	30.28	25.4	22.25	14.88	27.41	52.99	14.95	14.75	14.55	43.18	30.65	5.01
Merged-chr13-63255697-3	chr13	63255636	63255836	+	956.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	15707.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	16.96	8.3	9.7	20.11	28.64	24.15	17.61	31.85	20.85	25.11	40.7	23.18
Merged-chr4-142015191-4	chr4	142015100	142015300	+	956.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2698.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	7.27	9.06	11.41	13.67	12.68	10.03	7.97	11.72	10.62	9.54	10.05	7.83
Merged-chr4-120955837-3	chr4	120955733	120955933	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4132.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	16.15	16.85	18.83	12.47	12.68	26.65	9.63	19.85	16.33	21.09	21.1	20.36
Merged-chr18-34958894-3	chr18	34958805	34959005	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4554.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	11.31	8.8	16.54	10.05	19.23	18.81	14.62	10.01	17.51	29.12	9.04	10.96
Merged-chr2-152115600-3	chr2	152115510	152115710	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10086.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	31.09	19.62	27.38	13.27	30.27	51.43	26.91	27.5	28.91	39.67	46.23	14.72
Merged-chr10-15300291-3	chr10	15300197	15300397	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-491480.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	15.34	34.46	16.54	45.85	27.41	23.2	25.91	34.74	23.01	22.59	43.72	23.49
Merged-chr15-10873097-3	chr15	10873007	10873207	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44056.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	37.55	25.4	38.79	12.07	18.0	31.04	20.59	27.5	49.17	30.63	36.68	15.04
Merged-chr4-108380391-3	chr4	108380285	108380485	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099303, intron 1 of 2)	intron (NM_001099303, intron 1 of 2)	3270.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	12.52	10.31	15.97	10.86	16.77	18.81	17.94	21.31	25.18	31.13	33.67	15.04
Merged-chr16-10434320-3	chr16	10434216	10434416	+	956.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13046.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.85	13.33	25.67	7.24	11.45	6.27	9.97	11.36	22.23	20.59	18.59	5.95
Merged-chr11-5521546-3	chr11	5521442	5521642	+	956.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013842, intron 1 of 4)	CpG	901.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	16.56	13.33	6.85	10.86	17.59	21.01	15.94	11.36	13.77	14.06	13.57	27.88
Merged-chr1-127271364-3	chr1	127271261	127271461	+	956.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	66375.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	16.96	7.8	19.4	21.32	19.23	21.64	18.27	23.83	12.39	16.07	25.12	10.96
Merged-chr6-38981513-3	chr6	38981415	38981615	+	956.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	62529.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	12.11	12.83	15.4	23.33	17.18	13.48	8.3	28.82	18.29	15.06	35.68	22.24
Merged-chr4-150589253-2	chr4	150589151	150589351	+	956.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62923.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	14.54	14.09	29.09	19.71	16.36	18.5	6.98	11.44	11.21	7.53	8.54	4.07
Merged-chr1-45826988-3	chr1	45826900	45827100	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31834.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	11.71	9.56	13.69	23.33	28.64	20.7	25.58	49.88	27.34	17.57	21.61	11.28
Merged-chr11-106090964-3	chr11	106090872	106091072	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	intron (NM_011947, intron 1 of 15)	6070.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	21.8	12.58	15.97	13.67	22.5	20.38	21.26	8.02	19.28	29.62	22.11	14.1
Merged-chr6-131387727-3	chr6	131387643	131387843	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	707.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	13.73	20.88	7.99	21.32	27.0	30.1	16.94	34.32	19.08	20.08	34.17	18.48
Merged-chr5-115072293-3	chr5	115072208	115072408	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 2 of 10)	RSINE1|SINE|B4	35654.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	18.98	8.8	33.09	20.91	10.64	4.39	6.64	12.48	18.29	23.6	44.72	22.56
Merged-chr1-127278242-3	chr1	127278147	127278347	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73261.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	15.75	11.57	11.98	23.33	29.46	18.81	13.29	26.44	23.8	24.6	27.13	21.3
Merged-chr16-50092977-3	chr16	50092893	50093093	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20141.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	10.9	8.55	24.53	13.67	15.55	14.11	16.61	30.79	21.83	16.57	33.67	14.72
Merged-chr1-164138839-3	chr1	164138738	164138938	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011347, intron 9 of 15)	intron (NM_011347, intron 9 of 15)	-12997.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	16.15	15.09	9.7	14.48	18.82	23.52	13.29	16.96	12.98	24.6	29.14	19.42
Merged-chr16-11442705-1	chr16	11442605	11442805	+	956.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	ORR1B1|LTR|ERVL-MaLR	37057.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	2.01	0.0	1.61	3.27	3.14	10.3	9.2	5.9	9.04	2.51	3.45
Merged-chr7-135767683-3	chr7	135767581	135767781	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51302.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	12.11	9.06	8.56	17.7	15.55	15.37	14.95	15.42	24.59	17.07	21.1	11.59
Merged-chr3-151746198-1	chr3	151746098	151746298	+	956.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133871, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	3761.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.81	2.26	3.42	0.4	1.64	0.63	0.0	0.81	14.75	14.06	22.61	5.64
Merged-chr7-115217015-3	chr7	115216931	115217131	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265757.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	18.17	13.58	19.4	17.29	12.27	21.64	15.94	21.93	15.74	12.05	22.61	9.4
Merged-chr3-41228726-1	chr3	41228626	41228826	+	956.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145680.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	3.23	2.01	3.42	3.22	2.86	8.47	4.32	10.65	0.2	0.5	2.01	0.94
Merged-chr5-123128612-3	chr5	123128530	123128730	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3999.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	8.48	14.34	4.56	5.23	22.5	18.19	4.65	12.64	12.78	19.58	16.58	10.96
Merged-chr13-92939265-1	chr13	92939165	92939365	+	956.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94478.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	1.62	1.76	13.12	2.01	0.41	1.88	1.99	0.73	26.55	30.63	18.09	14.41
Merged-chr15-76904214-4	chr15	76904179	76904379	+	955.964294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012053, intron 1 of 5)	CpG	208.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	12.52	14.09	14.83	12.47	12.68	19.76	14.28	9.81	17.31	17.57	15.58	11.28
Merged-chr4-131975317-3	chr4	131975228	131975428	+	955.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 10 of 20)	intron (NM_183428, intron 10 of 20)	53557.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	16.96	14.34	26.24	34.99	27.82	8.15	12.62	25.18	17.51	16.07	27.64	14.72
Merged-chr4-40852682-3	chr4	40852545	40852745	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1892.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	17.77	12.58	5.13	12.47	24.14	18.5	16.61	14.41	13.37	16.07	26.13	13.16
Merged-chr2-166907105-3	chr2	166906990	166907190	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	994.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	14.54	25.4	25.67	10.86	29.46	30.1	16.94	32.41	28.52	31.63	28.64	16.29
Merged-chr12-35579029-3	chr12	35578935	35579135	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44046.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	12.52	17.86	9.7	22.52	22.09	19.13	22.59	23.61	19.87	17.57	15.58	10.96
Merged-chr12-33302258-3	chr12	33302162	33302362	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-253.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	16.56	25.15	31.38	15.28	25.36	22.89	5.31	18.0	35.99	23.1	51.25	13.78
Merged-chr4-102566662-3	chr4	102566559	102566759	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-3401.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	34.73	17.86	27.95	34.59	53.18	30.1	32.55	42.22	36.98	16.07	41.71	22.87
Merged-chr7-31149990-3	chr7	31149920	31150120	+	955.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 1 of 18)	intron (NR_153431, intron 1 of 18)	1151.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	15.34	21.38	13.12	10.46	24.14	33.87	11.96	19.04	26.75	23.6	21.1	16.92
Merged-chr8-125518508-3	chr8	125518418	125518618	+	955.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25685.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	16.56	20.63	9.7	22.12	18.82	19.44	12.95	21.9	28.13	16.07	31.15	17.23
Merged-chr14-71113400-2	chr14	71113301	71113501	+	955.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-137872.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	14.13	13.33	17.68	15.28	38.86	16.31	35.21	32.61	0.0	0.0	0.0	3.45
Merged-chr8-111337738-4	chr8	111337662	111337862	+	955.908325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310613, intron 1 of 10)	intron (NM_001310613, intron 1 of 10)	443.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	7.27	10.82	10.27	14.08	5.73	16.31	9.63	9.2	16.72	14.06	14.07	7.52
Merged-chr15-39817229-3	chr15	39817135	39817335	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164466, intron 7 of 9)	intron (NM_001164466, intron 7 of 9)	20190.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	13.33	9.06	5.7	15.28	18.41	11.6	14.95	12.76	20.06	19.08	29.14	9.4
Merged-chr1-46927261-3	chr1	46927164	46927364	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1488.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	60.17	55.34	67.88	83.66	69.14	60.21	45.84	78.0	12.78	9.04	10.55	14.72
Merged-chr9-41072307-3	chr9	41072202	41072402	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	7204.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	13.33	12.83	14.83	6.03	19.64	21.01	7.64	13.82	25.37	31.63	19.09	21.93
Merged-chr12-35319768-3	chr12	35319684	35319884	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124887.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	10.5	12.07	21.11	24.94	34.77	15.37	20.59	28.09	26.75	13.05	30.65	20.68
Merged-chr1-62283813-3	chr1	62283716	62283916	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-147707.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	8.48	13.83	21.68	14.08	16.36	10.35	17.27	19.57	8.65	14.06	24.62	12.22
Merged-chr4-130899521-3	chr4	130899431	130899631	+	955.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13803.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	13.33	12.58	21.11	21.72	13.09	22.89	25.24	32.36	15.54	12.55	26.13	23.49
Merged-chr10-126990523-3	chr10	126990434	126990634	+	955.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-4996.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	15.75	15.85	15.4	10.05	18.82	17.25	9.97	18.28	25.57	26.11	27.64	12.84
Merged-chr6-100834011-2	chr6	100833954	100834154	+	955.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182939, intron 1 of 8)	CpG	416.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	10.9	13.08	9.13	12.87	14.73	14.42	19.93	13.57	16.92	17.07	20.6	24.12
Merged-chr7-102017475-5	chr7	102017422	102017622	+	955.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010531, intron 2 of 6)	intron (NM_010531, intron 2 of 6)	633.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	12.11	3.52	13.69	1.61	10.23	19.13	13.29	7.07	12.78	18.58	19.09	13.78
Merged-chr7-44262947-3	chr7	44262858	44263058	+	955.85553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1480.0	NR_152170	628854.0	Mm.451981	NR_152170		Gm15517	-	predicted gene 15517	ncRNA	16.96	15.85	20.54	14.88	22.09	13.8	12.29	20.5	40.71	31.13	17.59	9.08
Merged-chr13-43554881-4	chr13	43554752	43554952	+	955.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 2 of 8)	intron (NM_001081059, intron 2 of 8)	5339.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	36.75	31.19	28.52	23.73	37.64	23.2	12.95	13.21	16.52	7.53	10.05	13.47
Merged-chr18-6145072-3	chr18	6144962	6145162	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8964.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	25.44	9.56	14.26	18.5	11.86	16.93	9.3	12.84	18.69	25.11	19.09	10.34
Merged-chr16-57546581-3	chr16	57546469	57546669	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-2673.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	20.19	10.31	27.38	35.8	16.77	32.3	9.97	22.68	21.24	29.62	20.1	8.14
Merged-chr3-105878073-3	chr3	105877966	105878166	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	7208.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	18.98	10.06	14.26	15.28	11.86	17.25	14.28	11.21	11.8	14.56	35.68	12.84
Merged-chr15-89407459-1	chr15	89407359	89407559	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001162880, intron 1 of 2)	ORR1C2-int|LTR|ERVL-MaLR	2804.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	12.11	11.82	18.25	26.95	1.23	3.14	2.33	2.72	6.1	4.02	9.04	4.07
Merged-chr5-146767875-1	chr5	146767775	146767975	+	955.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	27081.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.81	2.52	1.14	0.8	3.68	10.98	4.98	0.06	66.68	47.2	39.7	13.78
Merged-chr13-51312161-2	chr13	51312064	51312264	+	955.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96454.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	9.69	4.78	9.13	19.31	14.73	7.84	16.28	19.63	14.95	7.03	24.62	12.53
Merged-chr17-5138911-3	chr17	5138807	5139007	+	955.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	143833.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	12.92	14.34	17.11	18.5	14.32	17.56	20.59	21.67	15.74	12.55	22.11	6.58
Merged-chr14-27116818-3	chr14	27116726	27116926	+	955.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27167.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	24.23	17.61	17.68	24.13	30.27	39.51	25.24	27.25	16.72	14.06	20.6	6.27
Merged-chr12-102432966-3	chr12	102432890	102433090	+	955.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6823.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	18.57	17.36	9.7	6.03	22.09	15.68	11.63	9.9	30.88	11.55	9.04	10.96
Merged-chr13-116951544-3	chr13	116951456	116951656	+	955.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	73960.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	54.51	65.9	41.07	23.33	23.32	29.16	7.64	7.57	95.2	78.33	41.2	19.11
Merged-chr9-43303191-3	chr9	43303104	43303304	+	955.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-7559.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	29.88	19.12	31.38	28.56	20.46	33.87	14.62	34.79	11.8	29.12	23.62	19.74
Merged-chr18-7869833-3	chr18	7869758	7869958	+	955.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360956, exon 1 of 14)	5' UTR (NM_001360956, exon 1 of 14)	145.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	23.82	13.33	10.27	17.29	18.0	10.98	12.95	16.01	11.21	14.06	20.6	13.47
Merged-chr9-123936822-3	chr9	123936732	123936932	+	955.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31860.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	16.96	14.09	35.37	10.05	27.41	35.12	19.27	20.1	31.27	38.16	15.07	13.16
Merged-chr3-145942148-3	chr3	145942058	145942258	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	4144.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	29.88	39.74	30.8	9.25	29.86	28.85	23.25	43.91	52.32	31.13	47.23	26.63
Merged-chr4-12906853-3	chr4	12906757	12906957	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173746)	promoter-TSS (NM_173746)	20.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	12.52	19.12	14.83	21.72	26.18	18.5	27.57	39.28	20.06	15.57	50.25	13.78
Merged-chr11-32489533-3	chr11	32489422	32489622	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361561, intron 1 of 1)	B4A|SINE|B4	34152.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	29.88	23.14	16.54	13.27	23.32	27.59	17.27	16.35	36.58	12.55	20.6	11.59
Merged-chr1-37357324-3	chr1	37357224	37357424	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-11893.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	30.28	32.7	29.09	32.98	19.23	33.24	17.27	36.0	31.27	11.55	24.62	11.9
Merged-chr1-180293263-3	chr1	180293169	180293369	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36969.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	21.0	17.36	26.24	20.11	13.5	11.92	5.98	12.56	32.65	33.64	23.11	19.74
Merged-chr3-127792839-3	chr3	127792713	127792913	+	955.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2156.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	13.73	16.85	14.83	12.87	16.77	13.8	13.62	10.26	19.67	14.06	16.58	8.46
Merged-chrX-36645401-3	chrX	36645292	36645492	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081956)	promoter-TSS (NM_001081956)	22.0	NM_001081956	338351.0	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	15.75	6.79	4.56	21.32	14.32	25.4	13.29	21.06	11.6	5.52	23.11	8.46
Merged-chr13-49324477-2	chr13	49324362	49324562	+	955.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15254.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	7.27	6.29	9.13	8.04	11.86	18.81	16.28	19.26	16.33	11.55	20.6	12.22
Merged-chr6-125378310-3	chr6	125378209	125378409	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198604, intron 3 of 16)	intron (NM_198604, intron 3 of 16)	2195.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	28.67	12.07	23.39	18.5	36.82	28.22	14.62	25.37	12.59	17.07	17.08	10.34
Merged-chr12-85712807-3	chr12	85712683	85712883	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26063.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	16.96	13.58	8.56	12.47	20.86	17.25	8.64	10.51	18.69	18.58	17.59	18.17
Merged-chr6-15729421-1	chr6	15729321	15729521	+	955.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8760.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.42	5.53	0.0	4.02	12.27	13.17	13.29	12.56	7.67	9.54	3.01	2.82
Merged-chr15-100228327-3	chr15	100228244	100228444	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007497, intron 1 of 6)	CpG	485.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	19.38	22.13	17.11	14.88	10.23	21.01	19.27	15.59	17.9	24.6	15.58	11.28
Merged-chr16-10500913-3	chr16	10500803	10501003	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	MTEb|LTR|ERVL-MaLR	11122.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	20.19	16.85	27.38	8.45	26.18	19.44	13.95	18.11	35.01	25.11	40.7	21.3
Merged-chr13-9874164-3	chr13	9874067	9874267	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108846.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	2.02	5.28	13.69	12.07	10.64	14.11	2.66	9.0	10.03	14.56	10.55	14.1
Merged-chr1-62724643-3	chr1	62724532	62724732	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21315.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	28.67	20.88	55.9	21.72	22.09	20.38	16.61	18.0	14.55	4.52	10.55	8.14
Merged-chr2-156257338-3	chr2	156257245	156257445	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-55128.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	43.61	41.25	15.97	7.24	36.41	71.49	45.51	14.94	46.81	51.72	35.17	17.86
Merged-chr3-52046241-3	chr3	52046126	52046326	+	955.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58780.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	23.02	15.34	25.67	9.65	38.05	17.87	11.63	27.42	18.1	34.65	24.12	20.36
Merged-chr19-29414674-3	chr19	29414559	29414759	+	955.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	3740.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	15.75	11.07	13.69	7.24	31.5	22.89	9.97	20.58	21.24	13.56	12.06	10.96
Merged-chr2-3641211-3	chr2	3641103	3641303	+	955.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72255.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	18.17	21.88	11.41	18.1	17.59	33.24	33.22	23.78	28.91	13.56	15.58	11.9
Merged-chr9-65357124-3	chr9	65356958	65357158	+	955.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016688, intron 4 of 4)	B1_Mus2|SINE|Alu	-4002.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	8.48	5.03	10.84	10.05	10.23	12.23	12.95	19.04	7.08	11.05	10.55	6.89
Merged-chr18-82910760-5	chr18	82910698	82910898	+	955.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	-81.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	7.27	14.84	9.7	18.5	16.36	19.13	13.29	10.96	14.95	29.12	25.12	10.96
Merged-chr11-115000292-2	chr11	115000140	115000340	+	955.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134158, intron 2 of 3)	intron (NM_134158, intron 2 of 3)	1640.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	1.62	0.5	5.7	1.21	18.0	14.74	44.51	18.08	20.06	12.05	32.16	20.05
Merged-chr3-54724159-6	chr3	54724064	54724264	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11200.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	9.69	9.56	9.7	14.08	23.32	12.54	12.29	20.55	14.55	19.08	14.07	12.53
Merged-chr5-101766949-3	chr5	101766853	101767053	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1823.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	23.02	16.6	29.09	17.7	15.96	12.54	21.26	23.8	15.93	11.55	18.59	16.29
Merged-chr17-35079998-3	chr17	35079900	35080100	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163192)	TTS (NM_001163192)	3058.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	16.56	9.81	19.4	16.49	11.86	12.86	15.61	19.63	22.62	22.09	20.1	16.92
Merged-chr15-50449762-3	chr15	50449681	50449881	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	439268.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	14.13	7.04	18.25	32.98	10.23	8.15	7.31	11.47	14.75	10.04	23.11	14.1
Merged-chr6-29522993-3	chr6	29522883	29523083	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3642.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	12.92	14.59	29.09	20.11	25.77	21.32	27.57	29.92	23.41	18.08	21.61	14.41
Merged-chr11-119091062-3	chr11	119090991	119091191	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4854.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	19.79	16.1	10.27	13.67	18.0	12.54	9.3	14.36	24.0	15.06	22.11	10.65
Merged-chr6-108404879-3	chr6	108404774	108404974	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 33 of 61)	L1MB7|LINE|L1	-84869.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	13.73	18.61	21.68	8.85	31.91	40.76	27.24	39.73	19.08	16.57	17.59	10.65
Merged-chr9-72797249-3	chr9	72797146	72797346	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10028.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	12.52	12.83	14.26	10.46	16.36	11.6	20.26	22.77	15.14	20.59	30.15	10.02
Merged-chr5-118560871-3	chr5	118560782	118560982	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 1 of 30)	CpG-11438	163.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	29.07	14.59	13.69	29.36	28.23	22.89	18.93	22.12	23.6	15.57	18.09	12.53
Merged-chr2-52298144-2	chr2	52298027	52298227	+	955.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	7125.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	4.44	6.79	12.55	6.44	16.36	27.28	16.28	19.01	27.93	19.58	37.69	8.77
Merged-chr11-19998187-3	chr11	19998080	19998280	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033523, exon 2 of 6)	exon (NM_033523, exon 2 of 6)	73738.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	10.5	11.32	19.97	24.13	15.55	15.05	18.93	22.71	23.01	18.08	29.65	10.96
Merged-chr13-64422162-1	chr13	64422062	64422262	+	955.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10391.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.02	1.01	0.0	0.0	9.82	3.76	5.98	13.26	4.92	10.04	9.04	7.52
Merged-chr13-28481164-3	chr13	28481058	28481258	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	229715.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	28.67	23.64	21.11	16.09	23.73	31.04	26.57	23.22	11.8	11.05	4.52	3.76
Merged-chr19-21646259-3	chr19	21646201	21646401	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025423, intron 1 of 3)	MTD|LTR|ERVL-MaLR	6490.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	10.5	14.09	22.25	9.25	14.73	17.87	24.91	27.11	22.42	24.1	28.14	11.28
Merged-chr3-53098333-1	chr3	53098233	53098433	+	955.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	56786.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	2.42	3.27	5.7	6.44	22.09	10.98	23.25	32.52	4.13	5.02	5.53	4.7
Merged-chr15-72837544-2	chr15	72837431	72837631	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27207.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	10.5	16.6	11.41	6.84	21.68	25.71	18.27	16.82	26.95	16.07	22.11	13.78
Merged-chr12-35039791-3	chr12	35039690	35039890	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7399.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	31.09	26.66	29.66	29.36	33.14	27.28	21.26	30.67	18.49	17.57	14.57	13.78
Merged-chr8-46640022-3	chr8	46639914	46640114	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009810)	TTS (NM_009810)	22723.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	23.02	8.8	15.97	26.95	45.0	38.57	43.18	45.34	32.65	36.65	43.72	19.42
Merged-chr2-148523142-3	chr2	148523047	148523247	+	955.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79612.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.06	10.82	31.95	6.44	15.14	16.31	17.27	21.62	25.18	10.04	31.66	16.92
Merged-chr4-133174531-3	chr4	133174420	133174620	+	955.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-21135.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	23.02	14.09	30.23	44.64	21.27	13.8	11.29	19.35	27.34	11.55	35.17	15.04
Merged-chr11-45678873-3	chr11	45678783	45678983	+	955.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129200.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	19.79	18.11	2.85	6.84	15.96	24.15	8.97	15.79	22.82	19.08	21.1	6.27
Merged-chr1-87608556-3	chr1	87608460	87608660	+	955.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11752.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	25.44	13.33	22.82	13.27	21.68	23.2	14.62	24.22	23.6	31.63	33.67	20.99
Merged-chr4-122884192-3	chr4	122884100	122884300	+	955.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1876.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	21.4	14.34	11.98	10.86	16.36	22.89	14.28	19.63	28.32	29.62	43.21	12.22
Merged-chr11-63813050-3	chr11	63812961	63813161	+	955.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10D2|LTR|ERVK	109223.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	11.31	12.32	28.52	17.7	13.5	9.72	9.97	13.46	31.67	39.67	32.66	21.3
Merged-chr3-115992246-3	chr3	115992135	115992335	+	955.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023214, intron 3 of 10)	intron (NM_023214, intron 3 of 10)	12333.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	16.15	24.4	20.54	19.71	6.14	23.2	11.96	15.62	44.06	21.09	35.68	10.34
Merged-chr1-72014014-2	chr1	72013909	72014109	+	955.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8814.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	2.83	1.01	0.0	2.41	6.95	13.17	18.27	15.48	12.19	19.08	24.62	10.65
Merged-chr6-83322124-3	chr6	83322028	83322228	+	955.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-3911.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	25.04	38.74	44.5	15.69	9.41	32.93	24.58	17.38	35.4	17.57	41.71	13.78
Merged-chr11-97400507-3	chr11	97400405	97400605	+	955.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37954.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	12.92	23.39	18.25	18.1	20.05	24.77	10.96	15.31	36.98	20.59	17.08	14.72
Merged-chr8-85298712-3	chr8	85298612	85298812	+	955.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019716)	promoter-TSS (NM_019716)	785.0	NM_022997	65114.0	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	22.61	20.12	25.1	19.31	22.5	23.2	13.62	21.22	25.18	15.57	19.6	7.52
Merged-chr6-99024784-3	chr6	99024689	99024889	+	955.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	3509.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	40.78	28.67	21.11	24.94	24.55	26.34	10.96	16.29	24.0	13.05	15.07	14.1
Merged-chr5-80706861-1	chr5	80706761	80706961	+	955.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-313710.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.65	3.02	5.7	6.44	0.0	2.51	4.32	0.93	18.69	16.07	18.59	9.71
Merged-chr3-50906085-1	chr3	50905985	50906185	+	955.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-318362.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	2.42	7.04	5.7	5.63	4.91	10.03	12.95	16.96	2.56	5.02	13.06	5.64
Merged-chr8-70611427-3	chr8	70611345	70611545	+	955.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3131.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	13.33	17.1	13.12	11.26	5.73	6.9	11.29	7.91	12.0	15.06	22.61	17.86
Merged-chr13-114953609-3	chr13	114953511	114953711	+	955.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21511.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	28.27	23.9	23.96	33.78	21.27	8.78	14.28	25.96	20.06	22.09	24.12	12.22
Merged-chr10-128093338-3	chr10	128093233	128093433	+	955.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 1 of 29)	CpG	550.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	17.36	19.37	15.97	16.89	9.41	27.59	27.24	13.26	21.64	24.6	10.05	20.05
Merged-chr3-28027083-3	chr3	28026974	28027174	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 3 of 25)	intron (NM_008875, intron 3 of 25)	42903.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	14.54	11.57	11.98	12.87	13.09	20.38	24.91	30.81	25.37	21.09	30.15	30.7
Merged-chr10-24164313-3	chr10	24164215	24164415	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14998.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	14.13	19.62	14.83	25.34	27.0	18.81	16.61	26.55	20.65	30.13	34.17	12.22
Merged-chr8-13627774-3	chr8	13627644	13627844	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	49843.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	16.56	16.85	14.26	19.31	27.0	17.87	9.97	22.65	21.83	8.03	17.59	13.47
Merged-chr8-72572074-3	chr8	72571999	72572199	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151663, exon 1 of 3)	non-coding (NR_151663, exon 1 of 3)	276.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	13.33	18.86	9.13	14.08	40.91	25.09	15.94	32.78	20.65	24.6	20.6	10.96
Merged-chr4-150341008-1	chr4	150340908	150341108	+	955.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59092.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.85	8.05	10.27	4.83	21.68	13.48	6.31	14.24	4.52	5.02	6.53	5.33
Merged-chr3-15128543-2	chr3	15128429	15128629	+	955.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	157328.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	16.56	6.29	15.97	14.88	12.68	15.37	13.95	39.34	6.49	6.53	17.08	5.01
Merged-chr15-53399829-2	chr15	53399739	53399939	+	955.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-53656.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.23	3.27	2.28	3.62	11.86	21.64	9.63	23.8	24.39	23.1	15.58	18.48
Merged-chr1-59764041-3	chr1	59763901	59764101	+	955.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-278.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	21.4	14.59	10.27	18.5	14.73	13.48	12.29	13.88	13.96	14.56	21.61	11.28
Merged-chr3-61409845-3	chr3	61409759	61409959	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45352.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	12.52	11.82	19.97	24.53	38.46	45.78	40.19	39.36	45.24	38.16	54.77	13.16
Merged-chr12-55416281-3	chr12	55416170	55416370	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17445.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	23.82	14.09	25.67	16.89	42.55	31.04	48.5	44.13	36.98	29.12	39.19	9.71
Merged-chr17-35049748-3	chr17	35049631	35049831	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033444)	promoter-TSS (NM_033444)	-512.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	24.23	16.85	14.83	10.86	28.64	14.42	18.93	20.36	22.62	14.56	27.64	11.9
Merged-chr14-34549504-3	chr14	34549393	34549593	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039071, intron 8 of 12)	CpG	-26692.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	16.15	21.88	11.98	25.74	16.77	24.77	40.86	28.37	20.06	24.6	29.65	15.98
Merged-chr13-37453335-3	chr13	37453214	37453414	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107969.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	19.38	16.85	15.4	20.51	27.41	41.71	11.96	24.79	35.21	17.57	21.61	17.86
Merged-chr15-74930960-3	chr15	74930872	74931072	+	955.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-24079.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	29.48	20.63	12.55	23.73	28.23	24.46	15.94	31.74	31.86	34.14	29.65	22.87
Merged-chr8-70767939-3	chr8	70767841	70768041	+	955.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008841)	TTS (NM_008841)	-1278.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	16.15	9.56	20.54	8.85	14.73	15.68	12.29	11.58	20.06	13.56	18.59	12.22
Merged-chr11-3129312-3	chr11	3129152	3129352	+	955.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003517, intron 4 of 6)	intron (NR_003517, intron 4 of 6)	5231.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	10.5	8.3	18.83	12.47	4.5	14.74	5.65	13.07	0.79	0.0	1.0	1.57
Merged-chr7-27472918-3	chr7	27472822	27473022	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-918.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	17.77	16.85	9.13	11.66	22.91	16.93	7.31	14.5	28.91	16.07	19.09	11.9
Merged-chr11-118202744-3	chr11	118202594	118202794	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10048.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	10.09	6.29	17.68	2.82	18.82	5.96	17.27	19.09	8.85	5.52	16.58	17.23
Merged-chr14-65112963-3	chr14	65112880	65113080	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-14874.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.25	10.82	10.84	12.47	15.96	23.2	21.26	14.94	13.57	23.6	11.56	11.28
Merged-chr2-60892375-3	chr2	60892279	60892479	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-10941.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	12.52	8.55	19.4	22.52	11.86	24.15	15.28	18.11	18.29	21.59	46.23	10.02
Merged-chr6-31427436-3	chr6	31427361	31427561	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013791, intron 3 of 17)	intron (NM_013791, intron 3 of 17)	28633.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.44	9.81	13.12	18.1	8.59	18.5	19.93	13.85	7.67	6.53	24.62	13.16
Merged-chr2-118961727-3	chr2	118961648	118961848	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35251.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	12.11	29.43	22.82	16.89	14.73	21.32	11.63	23.92	111.52	96.91	119.09	74.24
Merged-chr15-91194759-3	chr15	91194645	91194845	+	955.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-2738.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	18.17	18.36	25.67	32.58	24.55	23.52	13.62	16.79	34.03	11.05	24.62	22.87
Merged-chr9-90040529-3	chr9	90040423	90040623	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-13744.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	25.84	21.13	41.07	15.28	20.86	17.25	17.94	30.81	10.42	7.53	15.07	9.08
Merged-chr10-18048423-3	chr10	18048324	18048524	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7516.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	21.4	23.14	23.39	16.49	22.09	32.61	18.93	31.26	11.21	7.03	26.63	12.22
Merged-chr8-109799503-3	chr8	109799386	109799586	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	20903.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	12.52	15.34	21.11	22.12	10.64	17.56	11.29	17.16	18.49	16.57	17.08	9.4
Merged-chr7-24902094-3	chr7	24901984	24902184	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	-902.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	38.76	29.68	27.95	9.65	41.32	52.99	20.93	23.05	30.09	31.63	37.69	24.43
Merged-chr10-93950143-3	chr10	93950036	93950236	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30C_MM|LTR|ERV1	13727.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	11.71	19.12	27.95	23.33	30.68	26.97	27.9	29.1	74.15	67.28	70.35	31.95
Merged-chr19-32077573-3	chr19	32077496	32077696	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	25544.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	12.92	11.82	6.85	3.62	3.68	17.87	10.3	6.03	13.77	12.55	6.53	5.01
Merged-chr7-44850411-3	chr7	44850332	44850532	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030488)	TTS (NR_030488)	425.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	13.73	12.58	17.11	9.25	20.05	16.93	22.92	15.08	20.65	13.05	25.63	18.8
Merged-chr9-26806530-2	chr9	26806432	26806632	+	955.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310768)	promoter-TSS (NM_001310768)	-64.0	NM_153803	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	2.83	7.55	11.41	18.5	25.36	26.65	19.6	29.69	25.37	16.07	35.68	19.42
Merged-chr2-5615052-2	chr2	5614941	5615141	+	955.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MIRb|SINE|MIR	61005.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.06	16.85	6.85	2.82	22.5	36.06	11.96	17.22	43.66	34.14	13.06	9.71
Merged-chr2-127391561-3	chr2	127391475	127391675	+	955.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	28289.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	11.31	7.8	21.68	18.5	20.46	28.22	15.61	24.34	28.72	35.15	33.67	21.3
Merged-chr12-117534076-3	chr12	117533990	117534190	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	CpG	17611.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	16.96	12.83	13.12	6.44	9.41	19.76	20.59	18.31	14.75	21.09	26.13	11.28
Merged-chr1-74997466-3	chr1	74997351	74997551	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029342, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-45779.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	9.29	11.32	19.4	15.69	10.23	14.74	10.96	16.18	21.64	21.09	32.66	17.23
Merged-chr7-25283832-3	chr7	25283721	25283921	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	1642.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	12.52	13.58	26.24	19.31	19.64	19.13	15.94	19.29	15.93	12.55	39.19	10.02
Merged-chr15-62382439-3	chr15	62382334	62382534	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162983.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	12.92	17.36	29.66	21.32	17.59	30.1	26.24	34.12	24.19	33.64	37.69	15.04
Merged-chr8-20424314-3	chr8	20424217	20424417	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028428, intron 1 of 5)	CpG	497.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	13.73	21.38	10.84	24.94	20.46	17.25	28.9	7.99	13.37	14.06	17.59	16.92
Merged-chr7-49764213-3	chr7	49764130	49764330	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	4718.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	16.15	8.8	23.39	18.1	19.64	22.89	23.58	44.5	26.95	21.09	28.64	20.05
Merged-chr9-96438188-3	chr9	96438045	96438245	+	955.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40530.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	12.92	10.06	11.41	23.33	16.77	15.37	24.91	24.59	16.13	13.05	30.15	14.1
Merged-chr10-8945304-1	chr10	8945204	8945404	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59234.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.65	5.03	0.57	4.83	2.86	8.47	2.33	10.26	6.49	7.53	7.03	8.14
Merged-chr18-60727591-3	chr18	60727483	60727683	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348103)	promoter-TSS (NM_001348103)	-17.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	22.21	10.31	13.69	13.27	21.68	21.01	12.62	18.56	21.44	9.54	35.68	14.41
Merged-chr1-184665520-1	chr1	184665420	184665620	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46977.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	2.02	2.52	0.57	12.87	4.5	2.82	7.97	7.18	3.54	3.51	7.54	3.76
Merged-chr13-107919778-3	chr13	107919662	107919862	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29698.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	31.09	29.18	17.68	11.26	31.91	44.84	18.93	17.22	37.96	33.14	50.25	12.53
Merged-chr18-65714106-1	chr18	65714006	65714206	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177028, intron 3 of 14)	intron (NM_177028, intron 3 of 14)	15838.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.4	3.02	2.85	0.0	3.27	3.14	6.64	7.93	2.36	2.01	9.55	6.89
Merged-chr16-20371919-2	chr16	20371796	20371996	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 17 of 29)	intron (NM_013790, intron 17 of 29)	-46492.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	7.27	15.34	6.28	13.27	18.0	8.78	20.59	16.82	17.11	23.1	21.1	8.14
Merged-chr1-160157437-1	chr1	160157337	160157537	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR85b|LTR|Gypsy?	-3862.0	NM_177839	329278.0	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	TN-W|Tnw|tenascin-W	tenascin N	protein-coding	0.81	0.5	0.0	0.8	19.23	12.86	11.63	24.08	0.0	0.0	2.01	1.57
Merged-chr1-153952153-1	chr1	153952053	153952253	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	52224.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.85	5.53	8.56	2.82	9.82	2.82	3.32	9.64	2.36	4.02	5.53	4.07
Merged-chrX-134757041-3	chrX	134756946	134757146	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106061)	promoter-TSS (NR_106061)	295.0	NM_001358521	71703.0	Mm.67949	NM_027870	ENSMUSG00000049047	Armcx3	1200004E24Rik|AI450003|ALEX3	armadillo repeat containing, X-linked 3	protein-coding	13.73	13.58	7.99	10.46	9.82	10.98	14.95	12.39	13.57	13.56	12.06	15.35
Merged-chr14-60757902-3	chr14	60757819	60758019	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10215.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	20.59	14.59	20.54	11.26	25.77	44.21	20.59	20.24	29.31	36.15	26.13	12.53
Merged-chr19-21441027-2	chr19	21440909	21441109	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	L1MC4|LINE|L1	31652.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.81	0.75	0.0	0.0	3.68	8.47	10.3	10.51	14.55	8.03	20.6	10.34
Merged-chr1-42866199-1	chr1	42866099	42866299	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023514, intron 2 of 10)	RLTR9A3|LTR|ERVK	14966.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	4.04	2.52	5.7	4.02	11.45	15.99	15.61	18.76	6.1	8.54	5.53	4.7
Merged-chr10-67636724-3	chr10	67636633	67636833	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64774.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	27.86	12.07	9.13	16.09	13.91	25.09	12.95	18.73	34.42	37.66	29.14	21.3
Merged-chr4-46039215-3	chr4	46039120	46039320	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021883)	promoter-TSS (NM_021883)	-2.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	20.19	17.1	14.83	21.72	20.86	26.34	17.27	32.78	20.26	18.08	44.72	9.71
Merged-chr8-39650163-3	chr8	39650055	39650255	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7477.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	19.79	18.11	21.68	18.5	59.32	58.01	34.88	52.26	35.8	32.13	30.65	12.22
Merged-chr3-90446597-3	chr3	90446526	90446726	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12990.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	18.17	10.56	9.13	14.48	25.77	15.68	10.96	12.08	14.16	14.06	26.63	6.89
Merged-chr7-30909039-3	chr7	30908959	30909159	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346085, exon 5 of 11)	exon (NM_001346085, exon 5 of 11)	5262.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	27.05	18.36	36.51	15.69	33.55	31.36	26.57	21.59	12.78	12.05	17.59	15.04
Merged-chr10-120125329-3	chr10	120125243	120125443	+	954.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12378.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	16.96	14.34	13.69	23.73	35.59	23.83	21.59	36.59	37.57	10.54	25.63	20.05
Merged-chr4-93520929-3	chr4	93520832	93521032	+	954.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-185421.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	8.88	11.32	22.25	28.96	13.5	5.02	14.95	22.32	17.11	18.08	31.15	5.01
Merged-chr15-97949861-3	chr15	97949773	97949973	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14356.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	17.77	17.86	20.54	14.88	21.27	22.26	7.64	15.39	24.39	15.06	40.7	15.66
Merged-chr12-71016631-3	chr12	71016507	71016707	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	640.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	11.71	10.56	9.7	10.46	17.59	14.42	14.95	11.38	16.92	24.1	12.06	2.82
Merged-chr1-180889969-3	chr1	180889859	180890059	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3149.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	11.31	11.07	0.0	9.25	23.73	15.99	13.29	8.75	16.72	15.06	13.57	18.17
Merged-chr7-102347556-3	chr7	102347460	102347660	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	79736.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	35.13	24.9	36.51	41.02	19.23	15.99	9.3	19.01	26.55	12.55	33.67	26.63
Merged-chr1-149958110-2	chr1	149958063	149958263	+	954.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3127.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.83	5.28	7.99	12.87	5.32	3.14	9.63	7.46	11.41	10.04	13.57	12.84
Merged-chr2-158130684-5	chr2	158130558	158130758	+	954.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	15734.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.27	8.8	13.12	2.01	17.59	15.05	31.22	16.77	21.05	16.07	19.09	9.4
Merged-chr11-3128441-2	chr11	3128340	3128540	+	954.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	4419.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	18.98	26.91	15.4	12.47	21.68	20.07	14.95	13.04	0.0	0.0	0.0	0.0
Merged-chr4-116150435-4	chr4	116150357	116150557	+	954.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290658)	promoter-TSS (NM_001290658)	-61.0	NM_029786	68273.0	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	10.5	9.81	7.99	9.25	16.36	25.4	14.28	13.93	22.23	18.58	52.76	15.66
Merged-chr16-33963872-3	chr16	33963773	33963973	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009471, exon 2 of 6)	exon (NM_009471, exon 2 of 6)	3165.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	22.21	18.86	14.83	31.37	14.73	25.09	15.28	29.13	16.13	20.08	16.58	9.71
Merged-chr19-46589333-1	chr19	46589233	46589433	+	954.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053196, intron 6 of 11)	intron (NM_053196, intron 6 of 11)	-9773.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	2.83	3.02	2.85	1.61	2.86	0.63	0.33	1.32	12.78	14.56	22.61	14.41
Merged-chr5-134106053-3	chr5	134105968	134106168	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	6320.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	11.31	11.57	17.68	7.24	14.73	20.38	15.61	17.47	26.55	17.07	26.13	14.41
Merged-chr12-81907815-1	chr12	81907715	81907915	+	954.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	47785.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	5.65	3.02	3.42	18.1	11.45	14.11	12.95	9.81	6.49	6.53	4.52	2.82
Merged-chr4-132798132-3	chr4	132798036	132798236	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1772.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	19.38	17.61	11.41	15.28	26.59	23.83	18.6	17.78	21.44	25.61	16.58	14.41
Merged-chr1-132355973-3	chr1	132355890	132356090	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001311108)	TTS (NM_001311108)	11958.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	23.82	12.83	22.25	17.29	19.23	18.19	3.65	14.3	19.67	20.08	15.58	11.28
Merged-chr4-128611087-3	chr4	128610977	128611177	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-979.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	41.59	42.76	25.1	26.14	44.59	38.57	11.63	15.67	32.26	13.56	4.52	14.41
Merged-chr14-75068898-3	chr14	75068816	75069016	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	52889.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	12.92	13.83	9.7	8.04	15.14	22.89	12.62	16.01	15.74	21.09	20.6	9.08
Merged-chr3-108537482-3	chr3	108537387	108537587	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-97.0	NM_029314	75504.0	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	18.17	13.08	17.68	14.88	10.23	14.74	11.63	15.64	16.92	22.59	51.25	15.04
Merged-chr2-69803009-3	chr2	69802905	69803105	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	13268.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	12.11	6.54	5.13	11.26	18.41	17.56	17.27	17.5	48.19	68.79	92.96	37.91
Merged-chr13-28843060-3	chr13	28842985	28843185	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	42337.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	14.13	28.67	15.97	14.88	23.73	28.54	27.24	18.17	19.08	14.06	21.1	9.08
Merged-chr14-120172192-3	chr14	120172013	120172213	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103556.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.85	7.04	7.99	3.62	6.55	12.23	13.95	14.3	13.18	14.06	19.09	9.08
Merged-chr3-107062842-1	chr3	107062742	107062942	+	954.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23338.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	3.23	3.52	2.28	5.63	20.86	13.8	9.63	7.12	8.85	15.57	5.02	5.95
Merged-chr6-108504947-3	chr6	108504860	108505060	+	954.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 53 of 61)	intron (NM_010585, intron 53 of 61)	15217.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	9.29	11.32	22.25	21.32	25.36	31.04	46.5	46.04	28.91	20.08	22.61	32.27
Merged-chr10-83946722-3	chr10	83946626	83946826	+	954.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153971.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	15.34	10.82	20.54	25.74	14.32	19.76	17.27	30.06	24.78	12.55	29.65	19.74
Merged-chr1-152623072-3	chr1	152622991	152623191	+	954.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	2126.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.63	10.31	9.13	10.46	9.82	10.35	13.62	11.78	15.93	14.56	16.58	13.78
Merged-chr3-14832996-2	chr3	14832889	14833089	+	954.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24624.0	NM_009799	12346.0	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	21.0	15.09	45.07	53.89	35.18	10.35	53.15	72.22	6.29	4.52	12.56	1.88
Merged-chr6-125279949-3	chr6	125279852	125280052	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009446, intron 4 of 4)	intron (NM_009446, intron 4 of 4)	6129.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	15.75	13.08	19.97	15.28	7.77	16.31	4.65	8.97	35.01	9.04	41.71	22.56
Merged-chr8-82459214-1	chr8	82459114	82459314	+	954.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56628.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	24.98	21.09	19.6	7.52
Merged-chr14-103363333-3	chr14	103363234	103363434	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16534.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	14.94	11.32	11.41	12.87	23.73	13.8	18.27	22.21	28.72	30.63	24.62	14.72
Merged-chr17-83640790-3	chr17	83640695	83640895	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8900.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	14.94	7.55	26.24	26.95	24.14	20.7	28.57	41.5	28.91	19.08	56.78	29.13
Merged-chr11-50225301-3	chr11	50225201	50225401	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-34.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	21.0	19.87	10.84	15.28	21.27	24.46	11.96	20.3	28.72	22.59	19.6	18.48
Merged-chr2-169774653-1	chr2	169774553	169774753	+	954.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	141007.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	0.57	0.0	0.0	0.94	0.66	0.0	11.6	9.04	19.09	10.96
Merged-chr2-30942784-3	chr2	30942669	30942869	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10232.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	18.98	12.07	17.11	13.67	13.09	23.83	12.62	15.17	10.03	14.06	10.05	9.08
Merged-chr18-70652321-3	chr18	70652160	70652360	+	954.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83968.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	8.08	14.34	9.7	13.27	9.0	16.62	12.62	19.54	15.54	10.54	29.14	10.65
Merged-chr4-128727927-3	chr4	128727827	128728027	+	954.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	CpG	356.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	22.21	16.85	18.83	10.86	14.73	20.07	15.28	17.38	20.46	10.04	28.64	10.34
Merged-chr3-96414749-3	chr3	96414611	96414811	+	954.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001579, exon 1 of 1)	non-coding (NR_001579, exon 1 of 1)	122.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	23.82	9.81	11.41	8.04	21.68	24.15	17.61	14.83	14.36	30.63	13.06	10.34
Merged-chr16-85801496-1	chr16	85801396	85801596	+	954.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	1617.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.81	1.26	3.42	2.41	10.64	6.27	10.3	12.81	2.16	2.01	4.52	1.57
Merged-chr2-32737266-3	chr2	32737153	32737353	+	954.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027529, intron 2 of 2)	intron (NM_027529, intron 2 of 2)	3763.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	12.92	12.07	19.4	19.71	16.36	26.03	12.95	16.88	13.37	8.54	22.11	13.78
Merged-chr2-52038052-2	chr2	52037963	52038163	+	954.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009398)	promoter-TSS (NM_009398)	-50.0	NM_009398	21930.0	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0.4	1.01	2.28	1.61	17.59	26.34	27.9	26.13	22.42	11.55	24.62	24.12
Merged-chr18-83422011-3	chr18	83421911	83422111	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-96127.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	13.73	9.81	10.84	18.5	23.32	21.01	34.55	34.79	35.21	36.15	34.67	23.18
Merged-chr10-96338785-3	chr10	96338684	96338884	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112577.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.04	14.34	16.54	14.08	27.0	14.74	21.26	18.93	19.47	18.58	16.08	19.42
Merged-chr5-24908884-3	chr5	24908757	24908957	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-348.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	15.34	8.8	5.13	11.66	19.64	24.15	24.58	23.44	24.39	23.6	31.66	12.22
Merged-chr16-23272978-3	chr16	23272831	23273031	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-17539.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	11.31	11.07	19.4	14.48	19.64	19.13	6.98	11.89	5.51	8.54	17.59	15.04
Merged-chr5-28269893-3	chr5	28269799	28269999	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24111.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	28.27	8.8	36.51	51.48	31.91	43.9	38.2	53.02	29.5	41.17	39.7	31.64
Merged-chr19-18639168-2	chr19	18639067	18639267	+	954.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145497, intron 2 of 8)	intron (NM_145497, intron 2 of 8)	7151.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	24.63	15.09	15.4	20.91	17.18	7.53	13.62	33.59	6.1	2.51	12.06	8.14
Merged-chr7-141558368-3	chr7	141558271	141558471	+	954.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3809.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	13.33	15.09	20.54	16.49	23.73	27.91	20.59	24.22	20.65	19.08	24.12	7.21
Merged-chr8-26690129-3	chr8	26690018	26690218	+	954.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134305.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	15.34	12.32	12.55	9.25	23.73	17.87	21.26	28.91	37.76	27.11	33.16	22.56
Merged-chr14-21853585-3	chr14	21853487	21853687	+	954.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-4677.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	25.44	16.35	15.97	19.71	15.96	28.85	16.94	24.81	16.13	30.63	19.09	7.83
Merged-chr10-122741019-3	chr10	122740915	122741115	+	954.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	MTC|LTR|ERVL-MaLR	61700.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	12.92	19.87	21.11	18.1	9.82	17.56	9.63	10.32	35.6	39.16	36.18	21.3
Merged-chr3-105877654-3	chr3	105877527	105877727	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	L1MEc|LINE|L1	6769.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	14.54	10.56	11.98	20.91	12.27	18.5	9.63	19.21	23.6	8.03	19.6	11.9
Merged-chr6-37258725-1	chr6	37258625	37258825	+	954.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	41251.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	2.83	2.52	3.42	10.46	31.5	9.09	11.96	19.74	1.97	6.53	5.53	0.0
Merged-chr6-76269152-2	chr6	76269052	76269252	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-973325.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	13.33	16.35	11.98	31.37	25.36	23.52	23.92	39.7	3.15	5.02	8.04	1.57
Merged-chr11-113617815-2	chr11	113617724	113617924	+	954.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1657.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	7.27	5.03	5.13	0.0	18.41	20.7	9.63	14.24	19.47	20.08	25.63	8.77
Merged-chr14-73179304-3	chr14	73179207	73179407	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	27544.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	23.42	8.05	29.09	30.57	27.41	15.99	60.46	57.5	16.52	11.55	20.1	8.46
Merged-chr5-113636046-3	chr5	113635937	113636137	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7566.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	15.34	18.36	25.1	11.26	28.64	52.05	32.22	26.86	33.24	37.66	36.18	7.83
Merged-chr2-34771219-2	chr2	34771155	34771355	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-835.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	11.31	18.36	4.56	11.26	17.18	25.09	11.96	7.29	16.52	12.05	7.03	9.08
Merged-chr8-88142026-3	chr8	88141929	88142129	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172757, intron 4 of 14)	intron (NM_172757, intron 4 of 14)	3823.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	18.57	17.36	13.12	22.12	22.09	14.42	17.61	22.93	27.93	22.59	29.14	19.11
Merged-chr1-134803779-3	chr1	134803665	134803865	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015606)	promoter-TSS (NR_015606)	-44.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	27.05	25.4	39.93	31.77	12.27	12.54	16.94	30.84	24.19	13.05	34.17	11.28
Merged-chr16-15948465-2	chr16	15948359	15948559	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	61173.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.25	10.31	2.85	16.49	4.91	3.14	9.3	8.38	4.52	7.03	6.03	9.08
Merged-chr11-87853294-3	chr11	87853245	87853445	+	954.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039684, intron 1 of 17)	intron (NM_001039684, intron 1 of 17)	120.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	7.27	18.11	11.98	22.93	20.05	20.7	8.97	15.62	13.37	20.08	21.61	10.34
Merged-chr10-15262556-3	chr10	15262483	15262683	+	954.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	502294.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	28.27	33.7	40.5	41.02	33.55	34.18	37.2	44.16	18.69	22.09	20.6	8.14
Merged-chr2-119047025-5	chr2	119046918	119047118	+	954.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029617)	promoter-TSS (NM_029617)	-101.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	16.15	11.32	12.55	12.87	7.77	15.99	12.62	10.6	23.01	27.62	26.63	24.12
Merged-chr5-117494570-3	chr5	117494463	117494663	+	954.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80561.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	16.15	16.85	11.41	13.67	19.64	10.03	18.93	24.0	26.75	19.58	18.09	19.74
Merged-chr9-64775665-3	chr9	64775571	64775771	+	954.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35340.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	29.07	13.08	19.97	25.34	29.86	23.52	37.54	45.11	5.7	19.08	24.62	8.14
Merged-chr16-13438111-3	chr16	13438023	13438223	+	954.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11400.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	31.9	25.66	34.23	17.29	23.73	15.99	10.96	19.51	17.9	14.06	23.11	8.77
Merged-chr11-70376307-3	chr11	70376133	70376333	+	954.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24202.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	13.33	9.81	11.98	8.04	15.14	18.19	7.64	10.07	9.44	10.54	9.04	8.77
Merged-chr1-80609838-3	chr1	80609732	80609932	+	954.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	L1MA8|LINE|L1	55520.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	10.5	11.07	17.68	21.72	25.77	39.82	35.54	37.37	24.59	29.12	39.19	14.41
Merged-chr8-84989538-3	chr8	84989432	84989632	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1063.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	32.3	10.31	42.78	26.95	27.82	40.14	27.57	47.5	35.21	18.08	64.82	27.88
Merged-chr2-25581909-3	chr2	25581802	25582002	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1803.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	22.61	19.62	8.56	17.29	18.0	32.3	17.27	13.18	21.83	26.61	17.59	12.22
Merged-chr18-4247474-3	chr18	4247376	4247576	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	81644.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	12.52	17.1	21.68	20.11	23.73	15.68	15.28	26.66	20.65	14.06	22.11	15.04
Merged-chr1-149891270-3	chr1	149891168	149891368	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	31171.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.25	3.77	26.81	12.47	14.73	17.25	21.26	29.86	20.46	22.59	22.11	10.34
Merged-chr19-32988923-3	chr19	32988809	32989009	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168203.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	17.36	2.77	10.84	16.09	5.73	10.98	8.64	13.23	11.41	15.06	17.59	12.84
Merged-chr14-31402831-3	chr14	31402671	31402871	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	MTD|LTR|ERVL-MaLR	14906.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	17.36	10.56	7.99	10.46	21.27	11.29	15.28	18.42	18.69	17.07	17.08	11.28
Merged-chr10-78303786-3	chr10	78303684	78303884	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	36423.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	32.3	23.14	35.37	23.33	40.09	33.87	19.27	39.73	31.47	12.05	26.63	17.23
Merged-chr13-47231272-3	chr13	47231152	47231352	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	37249.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	47.24	35.21	28.52	31.77	31.09	42.65	34.21	47.92	13.37	16.07	11.05	19.11
Merged-chr16-17727403-3	chr16	17727303	17727503	+	954.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4456.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	15.75	12.07	28.52	13.67	24.14	15.05	13.62	17.07	33.63	20.59	21.61	11.9
Merged-chr16-91476555-2	chr16	91476443	91476643	+	954.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-8672.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	29.88	10.06	18.25	10.46	23.32	24.15	15.94	26.52	5.31	3.01	7.54	5.33
Merged-chr19-41334697-3	chr19	41334587	41334787	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	50383.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	27.05	12.32	23.39	20.51	23.73	19.13	36.54	24.34	24.98	15.06	14.07	30.7
Merged-chr13-51071525-3	chr13	51071449	51071649	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29178.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	19.79	10.56	14.26	25.74	15.55	15.99	12.62	15.81	14.55	13.56	32.66	17.86
Merged-chr4-3483808-1	chr4	3483708	3483908	+	954.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-53282.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	2.83	2.01	3.42	4.42	20.86	20.38	11.29	11.94	4.33	13.05	7.03	4.07
Merged-chr6-115722416-3	chr6	115722326	115722526	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	36573.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	7.27	21.63	23.39	7.24	11.86	11.29	10.3	14.07	23.8	33.14	30.15	19.42
Merged-chr7-25132514-3	chr7	25132418	25132618	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-58.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	10.5	9.31	14.26	15.28	15.14	24.15	12.29	16.12	26.95	27.11	38.69	13.16
Merged-chr18-4304229-1	chr18	4304129	4304329	+	954.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48724.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.65	4.28	4.56	8.85	2.86	2.82	3.99	11.47	16.33	14.56	5.02	11.28
Merged-chr5-64298489-3	chr5	64298441	64298641	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68184.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.04	9.56	5.7	3.22	13.5	15.37	12.62	15.59	44.45	40.67	26.13	24.43
Merged-chr16-32202420-1	chr16	32202320	32202520	+	954.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	22620.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	16.96	15.59	8.56	6.84	11.86	24.15	9.63	11.13	18.69	22.09	16.08	5.64
Merged-chr12-69458556-3	chr12	69458460	69458660	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16990.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	12.52	15.09	9.7	17.7	15.96	24.77	16.28	14.61	24.59	17.57	22.11	13.78
Merged-chr14-61599543-3	chr14	61599436	61599636	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023233)	promoter-TSS (NM_023233)	24.0	NM_023233	66597.0	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	24.23	24.9	12.55	20.51	12.27	43.27	16.94	22.63	18.88	16.07	26.13	15.04
Merged-chr5-123135785-3	chr5	123135804	123136004	+	954.319458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3275.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	10.09	7.29	7.42	11.26	16.36	13.8	6.31	11.02	11.6	17.07	14.07	15.66
Merged-chr14-51163582-3	chr14	51163480	51163680	+	954.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019398)	TTS (NM_019398)	1320.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	19.38	9.56	8.56	20.11	15.14	23.52	12.29	14.02	29.5	26.61	30.65	23.49
Merged-chr1-36271740-3	chr1	36271723	36271923	+	954.301575	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1602.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	8.88	11.82	11.41	7.24	17.59	14.11	11.29	14.3	11.41	19.08	12.56	16.29
Merged-chr5-125278572-3	chr5	125278444	125278644	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	62550.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	18.57	15.59	17.11	13.27	14.73	11.92	13.62	7.18	17.9	18.08	12.56	16.92
Merged-chr5-123399119-3	chr5	123399029	123399229	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	4331.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	19.38	16.85	13.12	14.88	20.05	17.87	15.28	9.0	26.55	25.61	28.14	15.98
Merged-chr2-165993787-3	chr2	165993675	165993875	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	1138.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	15.34	9.81	19.4	22.93	14.32	12.23	14.62	16.54	17.31	16.07	17.08	13.78
Merged-chrX-113172487-3	chrX	113172380	113172580	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018818, intron 1 of 14)	intron (NM_018818, intron 1 of 14)	13035.0	NM_018818	12662.0	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	9.69	17.1	15.97	24.13	14.32	22.58	22.26	23.44	23.21	16.07	24.62	18.17
Merged-chr7-101093387-3	chr7	101093271	101093471	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15404.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	19.38	15.85	15.4	14.48	11.86	16.62	8.3	14.8	16.52	26.61	21.1	10.96
Merged-chr15-32920778-3	chr15	32920738	32920938	+	954.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008304, exon 1 of 5)	5' UTR (NM_008304, exon 1 of 5)	115.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	19.38	17.61	23.96	16.89	14.73	9.72	9.63	17.1	10.03	14.06	11.56	13.16
Merged-chr9-70239367-2	chr9	70239268	70239468	+	954.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	32018.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	15.34	19.87	23.39	15.69	13.91	12.23	4.98	9.59	16.13	0.5	8.04	3.13
Merged-chr2-93456767-1	chr2	93456667	93456867	+	954.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040533)	TTS (NR_040533)	3948.0	NR_040533	100038525.0	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	-	predicted gene 10804	ncRNA	2.42	6.29	5.7	0.8	5.73	13.48	8.97	8.19	1.97	1.51	2.51	0.94
Merged-chr10-15154969-1	chr10	15154869	15155069	+	954.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	394680.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	8.48	5.53	9.13	12.47	20.46	7.53	15.94	22.63	6.49	2.51	9.04	1.88
Merged-chr2-181459465-3	chr2	181459298	181459498	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	28.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	12.52	9.81	5.7	9.25	20.86	23.2	17.61	19.15	33.24	39.16	50.25	10.65
Merged-chr7-55957391-3	chr7	55957294	55957494	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	5099.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	20.19	30.43	13.69	9.65	28.64	34.81	9.97	16.77	36.78	23.6	20.1	13.16
Merged-chr16-92433732-3	chr16	92433635	92433835	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	32434.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	21.0	9.31	17.11	8.45	22.09	72.44	25.24	38.5	29.7	40.17	44.22	16.6
Merged-chr16-4625831-3	chr16	4625747	4625947	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-901.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	19.79	12.32	14.26	14.88	18.0	18.19	3.32	23.16	25.77	17.07	23.62	10.96
Merged-chr1-136194562-3	chr1	136194469	136194669	+	954.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329610, intron 12 of 22)	L1MEf|LINE|L1	18259.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	27.05	30.18	22.82	19.31	23.32	38.88	12.62	24.73	21.44	31.13	13.57	9.71
Merged-chr6-108783714-3	chr6	108783601	108783801	+	954.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026011, intron 1 of 6)	CpG	642.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	11.31	12.58	9.7	17.29	12.68	12.23	20.59	18.2	17.11	19.08	27.13	16.92
Merged-chr8-45367306-3	chr8	45367207	45367407	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	14984.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	16.56	15.59	20.54	8.04	6.14	14.42	15.94	24.25	8.26	8.03	18.09	14.1
Merged-chr4-70546381-3	chr4	70546283	70546483	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-11455.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	12.11	21.63	25.1	32.18	15.55	17.56	19.93	31.57	24.98	30.63	22.61	21.3
Merged-chr18-77954598-1	chr18	77954498	77954698	+	954.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 4 of 43)	intron (NM_001195633, intron 4 of 43)	16131.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	2.42	7.04	14.83	4.02	2.86	1.25	4.65	2.38	16.72	19.08	34.67	12.22
Merged-chr16-18836677-3	chr16	18836590	18836790	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033164, intron 1 of 2)	CpG	110.0	NM_001033164	72307.0	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	10.9	28.17	15.97	25.74	37.64	19.44	29.56	30.5	21.24	28.12	14.57	28.19
Merged-chr19-31956571-3	chr19	31956462	31956662	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87801.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	17.77	13.83	9.13	17.29	20.46	34.81	16.28	28.82	18.49	6.53	15.58	5.95
Merged-chr17-72908983-2	chr17	72908887	72909087	+	954.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-9318.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	24.63	21.38	18.83	7.24	12.27	18.81	14.62	9.64	8.65	7.53	4.52	2.82
Merged-chr7-19157603-2	chr7	19157503	19157703	+	954.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080815, intron 13 of 13)	CpG	7765.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	10.9	5.79	2.28	4.83	11.45	15.37	5.65	2.16	6.49	7.53	17.08	5.95
Merged-chr18-24178915-3	chr18	24178827	24179027	+	954.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-26417.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	14.94	13.83	16.54	18.9	6.95	15.99	9.97	15.64	13.57	5.52	20.1	10.02
Merged-chr5-135476419-3	chr5	135476335	135476535	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	68687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	25.44	11.57	10.27	16.89	29.46	28.54	12.29	20.3	45.24	43.18	48.24	25.06
Merged-chr18-62191667-3	chr18	62191563	62191763	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11563.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	23.02	20.37	47.35	37.81	22.5	23.2	17.94	40.82	12.39	4.02	12.06	8.77
Merged-chr16-30521914-3	chr16	30521814	30522014	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	28664.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	22.61	12.32	22.25	17.29	36.41	17.56	23.58	39.62	10.82	6.03	26.13	12.84
Merged-chr6-39447976-3	chr6	39447863	39448063	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	27585.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	14.13	20.37	7.99	10.86	37.23	31.98	17.94	23.27	37.37	50.71	27.13	23.49
Merged-chr9-94708476-3	chr9	94708368	94708568	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	38576.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	20.19	16.6	6.28	21.32	20.86	16.62	19.6	19.68	15.74	32.64	25.63	13.78
Merged-chr1-179834236-3	chr1	179834136	179834336	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30221.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	27.86	28.42	26.81	14.08	15.14	23.2	6.64	12.64	32.45	17.57	18.09	10.34
Merged-chr9-7785763-3	chr9	7785659	7785859	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	1369.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	13.33	14.34	25.1	21.72	15.96	13.17	11.96	22.07	30.29	11.05	17.59	10.34
Merged-chr17-32993180-3	chr17	32993115	32993315	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045559)	promoter-TSS (NM_001045559)	76.0	NM_001045559	240067.0	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	7.67	13.08	6.28	8.45	12.27	19.44	12.29	9.7	12.98	24.6	12.56	9.08
Merged-chr15-96936971-3	chr15	96936892	96937092	+	954.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83367.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	36.75	27.67	13.69	13.67	23.73	26.97	14.95	24.17	41.7	18.58	19.09	26.0
Merged-chr8-120697844-3	chr8	120697737	120697937	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29517.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	13.33	11.32	14.26	19.71	28.23	15.37	20.93	31.74	24.98	16.57	31.66	13.47
Merged-chr4-134307727-3	chr4	134307630	134307830	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7390.0	NM_001039048	433766.0	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	20.59	12.32	27.38	25.34	22.5	19.76	13.95	26.3	14.36	14.06	18.09	12.53
Merged-chr14-63411668-3	chr14	63411513	63411713	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	5574.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	15.34	15.85	10.84	13.27	13.09	7.84	10.3	8.75	14.75	11.05	14.57	9.71
Merged-chr8-68880535-3	chr8	68880435	68880635	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-20.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	32.3	17.61	13.12	33.78	8.59	8.78	20.26	26.1	13.77	14.56	28.64	16.29
Merged-chr10-51481652-3	chr10	51481577	51481777	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291893, exon 3 of 8)	exon (NM_001291893, exon 3 of 8)	1065.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	12.92	17.1	5.7	13.27	18.41	45.78	17.94	21.87	33.24	37.16	38.19	14.72
Merged-chr9-120493269-3	chr9	120493148	120493348	+	954.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026892, intron 1 of 3)	intron (NM_026892, intron 1 of 3)	642.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	14.13	12.83	6.28	18.1	9.41	19.44	14.62	9.9	13.77	18.08	22.11	12.84
Merged-chr10-37248751-1	chr10	37248651	37248851	+	954.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-109825.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	6.54	1.71	4.02	1.23	2.2	1.99	2.78	3.15	6.03	4.52	0.31
Merged-chr12-73681955-3	chr12	73681851	73682051	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	97155.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	11.71	8.05	4.56	6.44	20.05	19.44	16.94	11.97	21.24	12.55	17.59	11.59
Merged-chr9-123478642-5	chr9	123478601	123478801	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	0.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	14.54	13.58	11.41	13.67	21.27	17.25	14.28	14.86	32.26	27.11	32.66	10.96
Merged-chr2-103153472-3	chr2	103153365	103153565	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79790.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	28.27	29.18	20.54	14.08	15.96	16.62	10.3	14.61	18.69	5.02	16.58	2.51
Merged-chr1-72415794-3	chr1	72415711	72415911	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	108390.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	4.85	9.31	23.96	12.47	29.05	20.38	31.89	49.46	31.67	32.13	55.27	21.93
Merged-chr12-84969080-1	chr12	84968980	84969180	+	954.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1806.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	2.83	8.05	3.42	2.01	14.73	16.62	7.31	8.58	4.52	8.54	6.03	7.21
Merged-chr14-54410625-2	chr14	54410527	54410727	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-1155.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	16.56	12.32	3.99	18.9	9.41	15.05	14.28	13.91	12.59	11.55	17.08	9.4
Merged-chr4_JH584295_random-595-1	chr4_JH584295_random	495	695	+	954.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.8	6.03	10.55	10.96
Merged-chr5-23751404-3	chr5	23751260	23751460	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178403, intron 9 of 15)	intron (NM_178403, intron 9 of 15)	28303.0	NM_001289781	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	10.5	16.6	11.41	10.05	34.77	48.29	33.88	32.33	19.47	23.6	27.64	11.9
Merged-chr15-73422786-3	chr15	73422683	73422883	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358046, intron 1 of 34)	CpG	408.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	11.31	27.67	15.4	8.85	16.77	15.37	12.29	14.58	25.37	15.06	20.1	17.23
Merged-chr18-38247362-1	chr18	38247262	38247462	+	954.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	2836.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	1.62	1.76	1.14	3.62	2.45	4.7	7.64	5.36	2.36	4.02	8.54	3.45
Merged-chr2-135474368-3	chr2	135474271	135474471	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019677, exon 33 of 33)	3' UTR (NM_019677, exon 33 of 33)	108849.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	22.21	14.34	33.09	32.18	10.64	17.25	17.27	25.85	20.65	20.59	40.7	20.68
Merged-chr9-118638865-3	chr9	118638772	118638972	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	32163.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	31.09	20.12	27.95	23.73	48.68	18.5	38.53	41.36	38.55	15.06	42.71	22.87
Merged-chr17-64579998-3	chr17	64579907	64580107	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21642.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	13.73	12.32	17.68	10.46	21.27	17.25	20.93	18.79	25.57	18.08	19.6	15.98
Merged-chr6-91686115-3	chr6	91686024	91686224	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	2057.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	16.96	21.88	19.97	11.26	24.96	29.16	20.93	35.94	25.77	21.09	19.6	17.23
Merged-chr2-132112476-3	chr2	132112362	132112562	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	32646.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	52.49	50.31	27.38	14.08	29.86	73.06	18.27	20.36	40.91	26.61	33.67	20.99
Merged-chr6-34874673-3	chr6	34874580	34874780	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347101, exon 4 of 4)	exon (NM_001347101, exon 4 of 4)	3385.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	14.54	11.07	14.26	6.03	23.32	20.7	8.64	19.57	14.95	8.54	16.08	9.08
Merged-chr2-124298968-3	chr2	124298874	124299074	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-76616.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	25.04	14.59	27.38	16.09	18.82	10.03	25.91	32.89	20.06	19.58	16.58	10.65
Merged-chr2-58814658-3	chr2	58814571	58814771	+	953.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M8|LINE|L1	59487.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	12.92	4.53	18.25	18.1	15.55	6.59	12.95	21.53	13.77	16.07	21.61	13.16
Merged-chr7-35163823-3	chr7	35163731	35163931	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22554.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	19.38	17.1	11.41	8.45	23.73	52.37	14.28	15.73	31.86	27.62	35.68	14.1
Merged-chr2-84252275-3	chr2	84252173	84252373	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172993.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	18.17	10.31	14.83	21.32	20.86	10.66	10.3	16.29	28.32	15.06	30.65	9.08
Merged-chr17-43265394-3	chr17	43265309	43265509	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4938.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	15.34	21.38	17.11	23.73	16.36	34.49	14.28	29.92	23.6	19.08	30.15	23.18
Merged-chr6-123289909-3	chr6	123289818	123290018	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019948)	promoter-TSS (NM_019948)	-47.0	NM_019948	56619.0	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	23.02	16.85	5.7	12.07	21.68	39.82	13.95	17.27	23.8	26.61	33.16	12.22
Merged-chr4-128729916-3	chr4	128729821	128730021	+	953.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	2350.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	28.67	9.81	22.82	15.28	13.5	18.5	11.29	16.82	25.18	17.07	22.11	13.78
Merged-chr13-36132145-3	chr13	36132047	36132247	+	953.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	14504.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	14.54	14.09	17.11	12.47	20.86	17.25	10.3	18.31	16.33	14.06	7.54	10.02
Merged-chr9-104629592-4	chr9	104629611	104629811	+	953.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	60228.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.83	6.79	5.7	11.26	5.32	8.78	8.64	6.5	15.34	18.58	17.59	13.47
Merged-chr3-87499095-6	chr3	87498992	87499192	+	953.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-26486.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.63	5.53	2.28	5.63	6.95	2.51	4.32	2.89	10.03	5.52	9.04	11.9
Merged-chr17-17871146-3	chr17	17871086	17871286	+	953.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	12753.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	14.94	13.83	28.52	22.12	12.68	13.17	16.28	16.99	19.87	20.59	14.57	10.34
Merged-chr8-6119676-2	chr8	6119572	6119772	+	953.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1014385.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	13.73	7.29	31.95	18.5	1.64	2.82	2.66	3.5	24.19	19.08	38.19	20.68
Merged-chr4-130793577-2	chr4	130793480	130793680	+	953.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	1043.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.65	3.02	9.13	12.07	4.91	10.35	17.27	13.88	12.78	5.02	17.08	9.71
Merged-chr1-166631929-2	chr1	166631855	166632055	+	953.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164312, intron 8 of 8)	intron (NM_001164312, intron 8 of 8)	15738.0	NM_001164312	226604.0	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	1.62	1.01	0.57	10.86	5.73	16.62	21.92	24.31	11.6	8.03	27.13	11.59
Merged-chr1-80613601-3	chr1	80613488	80613688	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	51764.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	9.69	16.85	19.97	10.05	26.59	31.98	32.22	24.31	24.39	33.64	24.62	20.05
Merged-chr8-111939995-3	chr8	111939897	111940097	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-706.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	15.75	13.83	11.41	14.48	29.46	19.44	6.31	16.96	22.03	30.63	20.1	17.23
Merged-chr7-44858105-3	chr7	44858005	44858205	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290764, intron 2 of 16)	intron (NM_001290764, intron 2 of 16)	702.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	12.11	13.33	6.28	2.41	17.59	22.89	9.3	8.94	19.08	13.05	19.09	17.23
Merged-chr5-99571170-3	chr5	99571065	99571265	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157895.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	6.06	10.06	19.4	7.24	13.09	11.6	6.64	19.43	22.03	21.09	27.64	16.92
Merged-chr8-107436358-3	chr8	107436257	107436457	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-41.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	18.17	17.86	17.11	14.08	21.27	14.74	16.94	19.74	34.62	24.1	30.65	12.84
Merged-chr8-107277653-2	chr8	107277560	107277760	+	953.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-15810.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	8.48	5.79	1.71	10.46	9.41	21.01	16.61	20.69	16.92	15.06	25.12	10.65
Merged-chr5-36796113-3	chr5	36796014	36796214	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026242, intron 1 of 1)	CpG	640.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	16.15	16.85	19.97	6.44	18.82	21.32	10.96	14.02	23.8	20.08	17.59	19.74
Merged-chr11-114680467-3	chr11	114680377	114680577	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5009.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	27.46	25.15	29.66	15.69	26.18	19.44	14.95	23.41	38.16	19.08	59.29	24.43
Merged-chr15-86364042-3	chr15	86363906	86364106	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	86331.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	28.27	19.37	13.12	23.73	22.09	17.87	13.95	23.75	11.21	15.57	12.06	15.35
Merged-chr4-148498831-3	chr4	148498721	148498921	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039554, intron 1 of 4)	B2_Mm1t|SINE|B2	1641.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	17.36	21.38	25.1	33.38	19.64	18.5	10.3	13.12	15.93	13.05	17.59	9.4
Merged-chr7-81307747-3	chr7	81307641	81307841	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 9 of 21)	intron (NM_008803, intron 9 of 21)	37493.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	14.13	11.57	11.98	13.67	20.86	12.86	25.58	35.1	30.49	23.1	45.73	20.99
Merged-chr13-98693198-3	chr13	98693105	98693305	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1626.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	14.13	26.41	11.98	19.31	22.09	15.05	9.97	23.72	32.06	28.12	20.6	13.16
Merged-chr2-113445657-2	chr2	113445557	113445757	+	953.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	4593.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	22.21	8.8	19.97	20.51	24.14	23.2	21.59	26.13	6.49	3.51	3.01	9.08
Merged-chr5-72208666-2	chr5	72208556	72208756	+	953.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	5313.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.65	15.09	1.14	4.83	27.82	33.55	20.26	14.13	17.9	12.05	18.59	10.34
Merged-chr1-161463925-2	chr1	161463835	161464035	+	953.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30722.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	17.77	8.3	17.11	21.32	22.09	13.8	16.94	17.47	12.59	8.03	8.04	4.7
Merged-chr1-136618783-2	chr1	136618696	136618896	+	953.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6105.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	14.13	3.02	7.42	5.63	25.36	16.62	14.95	25.54	13.37	17.57	17.59	9.4
Merged-chr19-43676040-3	chr19	43675946	43676146	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045645, exon 1 of 1)	non-coding (NR_045645, exon 1 of 1)	868.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	21.0	19.37	9.13	16.89	10.64	30.42	18.93	20.44	25.18	44.69	40.2	24.75
Merged-chr12-108613302-3	chr12	108613215	108613415	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	7549.0	NM_001163395	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	14.94	18.61	7.99	23.33	29.86	32.61	8.3	32.64	33.83	34.14	32.66	19.11
Merged-chr17-32534279-3	chr17	32534178	32534378	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2279.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	23.02	12.07	23.96	28.96	27.41	21.01	13.29	24.93	24.98	23.1	22.11	9.4
Merged-chr8-120709361-3	chr8	120709244	120709444	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27014.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	17.77	30.94	11.41	17.29	24.14	37.0	21.59	16.71	33.24	23.1	27.64	18.8
Merged-chr4-43547319-3	chr4	43547210	43547410	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 19 of 56)	intron (NM_011602, intron 19 of 56)	15273.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	18.98	10.31	10.27	35.39	24.14	25.09	20.93	30.84	21.44	26.11	40.7	20.36
Merged-chrX-155214749-4	chrX	155214582	155214782	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009121, intron 3 of 5)	intron (NM_009121, intron 3 of 5)	1767.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	5.25	12.32	4.56	6.84	13.09	8.15	12.95	11.24	16.13	11.05	12.06	4.39
Merged-chr7-4228484-3	chr7	4228367	4228567	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-9287.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	8.48	9.31	11.41	8.45	20.46	14.42	10.3	21.93	43.86	33.14	28.14	22.24
Merged-chr1-182512019-3	chr1	182511906	182512106	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	5604.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	14.13	23.9	19.97	8.85	13.91	16.93	13.62	10.77	11.8	14.56	18.59	11.9
Merged-chr13-20232292-3	chr13	20232181	20232381	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	141774.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	18.98	9.06	21.11	16.09	23.32	9.41	10.63	26.41	33.24	14.06	31.15	19.74
Merged-chr9-65844658-3	chr9	65844553	65844753	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357872, intron 12 of 13)	intron (NM_001357872, intron 12 of 13)	-17089.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	20.19	15.85	33.09	17.29	20.46	15.68	25.58	32.16	13.18	12.05	19.6	9.4
Merged-chr3-45254987-1	chr3	45254887	45255087	+	953.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	123273.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.81	0.75	1.14	0.0	18.82	16.62	12.29	8.38	12.98	5.52	4.02	5.01
Merged-chr7-31157148-3	chr7	31157047	31157247	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5211.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	16.96	14.59	4.56	2.41	15.14	25.71	8.97	5.58	29.7	19.08	13.06	5.95
Merged-chr17-32283509-3	chr17	32283388	32283588	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	635.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	33.92	17.61	9.7	6.03	20.86	38.26	9.63	8.27	38.35	29.62	24.12	8.14
Merged-chr1-190169434-1	chr1	190169334	190169534	+	953.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360827)	promoter-TSS (NM_001360827)	81.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	6.06	2.26	0.57	4.02	4.5	7.84	11.29	7.43	1.18	4.02	0.5	4.07
Merged-chr3-40523490-3	chr3	40523382	40523582	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-570.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	11.31	14.34	5.7	7.64	23.73	31.67	15.61	27.31	36.39	25.61	37.18	24.12
Merged-chr4-133586736-2	chr4	133586651	133586851	+	953.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290742, intron 2 of 4)	intron (NM_001290742, intron 2 of 4)	2378.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	15.75	17.1	18.83	13.27	10.64	11.29	10.63	9.64	2.56	1.0	1.51	1.57
Merged-chr10-91141734-3	chr10	91141632	91141832	+	953.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17769.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	21.4	10.56	29.09	12.07	11.45	28.22	27.24	22.91	33.83	34.65	22.61	17.23
Merged-chr12-69538707-3	chr12	69538604	69538804	+	953.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44324.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	14.94	10.31	14.83	17.7	30.68	33.87	19.27	27.73	29.11	21.59	34.17	19.74
Merged-chr10-3832149-3	chr10	3832050	3832250	+	953.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-40517.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	12.11	14.09	16.54	13.67	20.86	15.68	18.27	23.33	44.84	37.16	58.79	28.82
Merged-chr5-108031504-2	chr5	108031388	108031588	+	953.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34186.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	6.46	5.03	7.42	10.05	11.45	16.93	7.64	14.55	22.62	24.1	23.11	15.04
Merged-chr2-167744143-3	chr2	167744050	167744250	+	953.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52973.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	31.5	41.25	18.83	9.65	20.86	64.28	41.19	15.84	50.35	54.73	30.15	10.96
Merged-chr7-145098591-3	chr7	145098467	145098667	+	953.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109552.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	10.9	20.63	33.09	17.7	20.05	29.16	11.63	17.38	22.23	25.11	22.11	9.4
Merged-chr11-115700417-3	chr11	115700327	115700527	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	-499.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	17.36	21.63	24.53	14.08	23.73	25.71	12.62	15.67	29.5	33.64	27.64	10.65
Merged-chr2-150609384-3	chr2	150609303	150609503	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-836.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	13.73	14.09	12.55	19.71	27.82	21.32	15.28	21.0	20.46	18.58	21.1	16.6
Merged-chr13-55125107-3	chr13	55125023	55125223	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012017, intron 5 of 6)	intron (NM_012017, intron 5 of 6)	19814.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	11.31	10.31	26.81	19.71	13.91	16.93	17.61	13.65	28.32	14.06	27.13	23.18
Merged-chr2-165286578-3	chr2	165286471	165286671	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1216.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	23.02	17.1	14.83	20.51	34.36	21.32	11.96	21.93	16.92	14.06	18.09	12.53
Merged-chr1-66649815-3	chr1	66649716	66649916	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-51015.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	19.79	20.88	25.67	20.51	9.82	16.62	14.28	11.97	22.82	11.55	19.09	7.21
Merged-chr5-21735781-3	chr5	21735694	21735894	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1366.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	16.15	16.85	9.13	9.25	17.59	22.26	9.3	20.72	15.74	22.59	9.04	18.8
Merged-chr10-63338543-3	chr10	63338451	63338651	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019812, intron 1 of 8)	CpG	484.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	25.04	25.15	17.11	9.25	24.14	20.38	23.25	15.64	19.67	28.62	25.63	11.28
Merged-chr3-135686703-3	chr3	135686607	135686807	+	953.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4840.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	32.3	24.15	15.4	29.36	39.27	28.85	22.92	31.09	38.55	47.2	37.69	20.99
Merged-chr10-39266747-3	chr10	39266637	39266837	+	953.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102943.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	15.75	8.3	24.53	26.95	29.05	20.07	16.28	33.0	16.52	16.07	21.61	15.04
Merged-chr11-105901721-2	chr11	105901608	105901808	+	953.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181071, intron 17 of 25)	intron (NM_181071, intron 17 of 25)	42779.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	10.09	15.09	4.56	9.25	22.09	28.54	16.94	22.18	12.0	2.51	16.08	3.45
Merged-chr12-99464483-3	chr12	99464389	99464589	+	953.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14415.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	13.73	14.84	25.1	31.37	17.18	26.03	15.94	22.09	46.03	30.63	31.66	27.25
Merged-chr17-33815600-1	chr17	33815500	33815700	+	953.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030697, intron 1 of 10)	B2_Mm1a|SINE|B2	5077.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.23	0.75	0.0	0.0	32.73	23.2	9.97	18.06	2.16	3.51	1.51	0.31
Merged-chr1-105747369-3	chr1	105747215	105747415	+	953.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-33408.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	14.13	15.34	18.83	41.02	12.27	18.5	14.28	21.28	21.24	16.57	8.54	5.01
Merged-chr5-3369533-3	chr5	3369442	3369642	+	953.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	25649.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	17.36	10.31	36.51	19.71	21.68	16.31	14.95	35.44	23.41	23.6	54.77	17.23
Merged-chr7-31181387-2	chr7	31181299	31181499	+	953.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	19041.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	11.31	2.26	10.27	5.63	15.96	16.31	6.64	17.27	15.14	4.52	18.09	12.22
Merged-chr12-69364259-3	chr12	69364172	69364372	+	953.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7096.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	16.15	14.09	31.38	12.07	25.36	25.4	19.93	16.12	40.52	29.62	23.62	10.96
Merged-chr4-53437537-3	chr4	53437428	53437628	+	953.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2885.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	41.59	45.02	28.52	18.5	59.32	93.44	48.5	43.23	36.39	43.18	19.09	6.27
Merged-chr2-165408000-3	chr2	165407891	165408091	+	953.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054055, intron 12 of 12)	intron (NM_054055, intron 12 of 12)	-7597.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	25.04	14.59	9.13	13.27	13.09	25.71	14.95	16.74	31.47	25.11	17.08	7.52
Merged-chr15-68361260-3	chr15	68361152	68361352	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19963.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	22.61	20.37	17.11	24.94	8.18	11.6	14.95	24.76	27.34	23.6	24.62	16.6
Merged-chr17-24851605-3	chr17	24851501	24851701	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159626, intron 1 of 8)	intron (NM_001159626, intron 1 of 8)	934.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	29.88	21.63	38.79	14.88	37.23	37.63	35.87	39.14	49.96	19.58	26.13	10.02
Merged-chr7-138846715-3	chr7	138846629	138846829	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027115)	promoter-TSS (NM_027115)	343.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	19.79	21.88	15.4	9.65	23.32	11.6	20.59	13.68	19.67	22.09	12.56	15.98
Merged-chr11-106076495-3	chr11	106076402	106076602	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8400.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	26.65	23.39	42.21	24.53	30.68	40.45	7.64	27.14	35.01	33.14	37.69	17.54
Merged-chr17-27005834-3	chr17	27005720	27005920	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12215.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	15.75	9.31	19.97	12.07	24.96	19.13	10.63	19.85	25.18	18.08	16.08	15.98
Merged-chr4-55817252-3	chr4	55817161	55817361	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-284786.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	29.48	15.09	20.54	26.55	11.05	15.05	13.29	22.23	16.52	21.09	22.61	11.28
Merged-chr5-141013552-3	chr5	141013446	141013646	+	953.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12950.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	10.9	7.55	18.83	20.91	14.73	11.92	17.94	20.58	22.03	11.05	34.17	24.75
Merged-chr6-82048165-2	chr6	82048083	82048283	+	953.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6555.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	20.59	12.83	33.09	28.56	18.0	10.98	29.9	28.68	0.2	2.51	1.0	0.31
Merged-chr11-3171442-2	chr11	3171342	3171542	+	953.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B1_Mur1|SINE|Alu	22021.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	15.34	22.13	16.54	14.88	27.82	9.72	12.29	14.69	0.0	0.0	0.0	0.63
Merged-chr6-28292882-3	chr6	28292774	28292974	+	953.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31273.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	16.56	25.4	17.68	11.26	12.27	22.26	9.63	11.1	23.01	22.59	26.13	9.08
Merged-chr1-192090030-3	chr1	192089996	192090196	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	2503.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	10.5	6.54	10.27	11.66	2.05	2.2	5.98	10.07	9.83	3.01	5.53	6.89
Merged-chr11-100725626-3	chr11	100725495	100725695	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	MIR3|SINE|MIR	11745.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	21.0	21.63	29.66	10.46	16.36	15.68	7.97	10.29	23.41	14.56	17.59	14.41
Merged-chr19-47281072-3	chr19	47280986	47281186	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164717, intron 9 of 13)	intron (NM_001164717, intron 9 of 13)	-7497.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	10.09	14.84	23.39	15.28	27.82	22.89	41.85	39.08	15.93	15.57	17.08	12.22
Merged-chr10-127420795-3	chr10	127420708	127420908	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168293)	promoter-TSS (NM_001168293)	-59.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	23.02	27.17	16.54	7.64	29.46	60.21	7.64	8.27	37.57	42.68	34.17	17.23
Merged-chr10-41968360-3	chr10	41968260	41968460	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	50022.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	13.33	18.11	11.41	24.13	27.41	21.01	11.63	22.93	28.72	17.07	27.64	15.35
Merged-chr11-95258686-3	chr11	95258595	95258795	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2834.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	12.11	11.57	21.11	12.47	30.68	23.52	16.61	21.93	27.54	20.59	38.19	14.41
Merged-chr5-150593867-4	chr5	150593781	150593981	+	953.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133898, intron 1 of 4)	CpG	644.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	12.92	14.09	18.25	6.84	20.86	11.29	17.94	12.48	16.52	27.62	16.58	22.87
Merged-chr17-30506991-3	chr17	30506909	30507109	+	953.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	69278.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	38.76	60.62	100.4	88.48	17.59	6.9	11.96	19.68	26.75	21.09	19.09	15.35
Merged-chr9-110529184-3	chr9	110529079	110529279	+	953.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3418.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	13.73	22.13	24.53	10.86	28.23	23.2	8.97	13.01	37.57	32.64	56.78	22.87
Merged-chr5-64676420-3	chr5	64676310	64676510	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65711.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	33.11	26.66	19.4	22.12	26.18	37.94	22.59	16.32	24.39	29.62	16.58	10.65
Merged-chr15-73644112-3	chr15	73644019	73644219	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19375.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	10.5	15.34	19.4	16.89	17.59	31.36	19.27	18.53	23.41	25.11	22.11	16.6
Merged-chr15-66950343-3	chr15	66950248	66950448	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008681, intron 3 of 15)	intron (NM_008681, intron 3 of 15)	19293.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	19.38	9.81	34.8	34.19	27.82	21.01	32.88	40.65	31.08	29.62	58.79	25.37
Merged-chr4-20033096-3	chr4	20032991	20033191	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8961.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	27.46	21.13	11.41	17.29	30.27	56.44	25.91	38.36	50.94	40.67	73.86	33.52
Merged-chr8-125224628-3	chr8	125224534	125224734	+	953.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	170439.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	8.88	15.34	25.1	16.89	26.59	33.87	24.91	42.42	29.31	28.62	53.26	23.18
Merged-chr13-21832146-3	chr13	21832027	21832227	+	953.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175657).2	promoter-TSS (NM_175657).2	31.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	25.44	36.22	47.35	59.12	27.82	38.57	46.84	28.63	21.44	23.1	30.15	22.56
Merged-chr6-87537075-3	chr6	87536976	87537176	+	953.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3817.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	23.82	17.61	41.07	20.51	10.23	10.35	9.63	18.39	17.11	16.07	16.08	11.9
Merged-chr3-9886827-3	chr3	9886729	9886929	+	953.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-53150.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	20.19	42.51	32.52	11.26	72.41	103.48	47.17	49.88	111.92	137.58	160.79	47.3
Merged-chr1-33503044-3	chr1	33502957	33503157	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	166737.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	11.31	15.09	21.11	15.69	24.96	23.83	18.27	23.58	27.93	16.07	23.62	13.78
Merged-chr6-13603333-3	chr6	13603205	13603405	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028990, exon 2 of 5)	exon (NM_028990, exon 2 of 5)	4793.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	28.27	20.12	6.85	17.29	13.5	23.2	12.29	10.01	16.13	27.11	7.03	6.89
Merged-chr13-45974009-3	chr13	45973923	45974123	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9032.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	17.77	20.12	14.83	7.64	20.86	26.97	15.94	19.01	32.45	37.16	29.14	10.34
Merged-chr17-81432914-3	chr17	81432806	81433006	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305481.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	13.73	14.84	18.83	16.09	5.73	22.26	17.94	17.36	14.75	12.05	19.09	7.21
Merged-chr10-91300311-3	chr10	91300198	91300398	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89|LTR|ERV1	-79679.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	12.52	16.35	26.24	32.18	29.05	21.32	16.94	47.92	41.11	42.18	63.31	37.28
Merged-chr17-56612136-3	chr17	56612038	56612238	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1257.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	11.71	9.06	13.69	10.46	16.36	15.37	12.62	11.3	18.49	27.11	21.1	21.93
Merged-chr16-36590109-2	chr16	36590003	36590203	+	953.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-27969.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	10.09	3.27	9.7	14.48	9.41	11.92	11.96	11.47	11.8	8.54	21.1	5.33
Merged-chr11-100719425-3	chr11	100719326	100719526	+	953.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 2 of 5)	intron (NM_001305003, intron 2 of 5)	5576.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	26.65	11.07	33.66	16.89	21.27	20.38	23.25	26.41	20.85	27.11	12.06	19.42
Merged-chr10-128526741-3	chr10	128526630	128526830	+	953.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-871.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	18.57	12.58	11.98	13.67	12.68	21.64	5.98	23.1	20.26	26.61	27.13	10.96
Merged-chr8-80240080-2	chr8	80239978	80240178	+	953.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182070.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	21.0	4.28	21.11	18.9	12.68	5.96	15.94	19.57	6.49	9.04	9.55	4.7
Merged-chr11-100395446-3	chr11	100395323	100395523	+	953.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2367.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	26.65	24.65	14.83	16.09	21.27	18.19	8.3	19.74	18.88	18.08	9.55	9.08
Merged-chr12-113146285-3	chr12	113146189	113146389	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347443)	TTS (NM_001347443)	5684.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	15.34	12.58	14.26	9.25	24.14	28.22	16.28	16.88	26.95	28.12	22.61	17.86
Merged-chr5-43879972-3	chr5	43879851	43880051	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	11142.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	14.13	26.91	16.54	32.18	21.27	27.59	35.54	14.83	25.77	25.11	35.68	19.42
Merged-chr17-31088925-3	chr17	31088859	31089059	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	31265.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	10.5	10.06	11.98	6.44	16.77	22.26	9.63	12.0	15.34	19.08	20.1	15.66
Merged-chr2-156181533-3	chr2	156181428	156181628	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-1290.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	25.04	23.9	17.11	16.49	19.23	51.11	29.23	21.9	22.82	18.08	17.08	17.86
Merged-chr9-66213770-3	chr9	66213666	66213866	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55540.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	37.96	41.5	21.11	12.87	15.96	52.68	17.61	9.64	34.42	27.11	31.66	9.4
Merged-chr13-100683042-3	chr13	100682941	100683141	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183115, intron 5 of 11)	intron (NM_183115, intron 5 of 11)	13560.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	12.11	11.57	14.83	21.72	26.18	26.03	30.89	30.93	30.49	24.1	56.78	36.65
Merged-chr11-114877192-3	chr11	114877094	114877294	+	953.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12847.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	21.8	10.56	9.13	12.47	24.55	17.56	11.29	15.14	19.47	12.05	21.61	14.1
Merged-chr11-69325814-2	chr11	69325718	69325918	+	953.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-440.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	8.88	9.56	5.7	12.07	18.82	15.37	9.3	9.14	22.62	21.59	27.64	12.53
Merged-chr2-27373636-3	chr2	27373546	27373746	+	953.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	MTC|LTR|ERVL-MaLR	53962.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	30.69	18.11	53.05	35.8	29.86	27.91	38.53	69.76	13.96	9.54	29.14	17.86
Merged-chr5-107866590-3	chr5	107866502	107866702	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	HAL1|LINE|L1	8505.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	19.38	13.33	23.96	16.49	19.23	19.76	12.95	35.27	22.23	9.04	23.11	11.28
Merged-chr15-58687927-3	chr15	58687846	58688046	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135481.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	14.54	13.58	19.97	8.85	20.46	15.05	19.6	16.23	24.59	25.11	18.09	10.34
Merged-chr9-111056110-3	chr9	111056035	111056235	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1109.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	28.67	27.42	26.81	15.69	37.23	61.77	21.92	14.86	25.96	15.57	12.06	13.78
Merged-chr19-58978944-3	chr19	58978864	58979064	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-35292.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	14.13	11.32	11.41	11.26	25.77	29.16	36.54	22.04	24.78	25.11	26.13	18.48
Merged-chr1-36927782-3	chr1	36927670	36927870	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	11757.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	33.92	16.35	14.83	17.29	27.82	35.75	28.23	25.49	25.77	22.09	26.63	9.4
Merged-chr7-43564780-3	chr7	43564663	43564863	+	953.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001008549, exon 2 of 5)	5' UTR (NM_001008549, exon 2 of 5)	2393.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	28.27	20.63	25.1	10.86	31.5	34.18	30.89	17.69	29.7	17.57	26.13	22.87
Merged-chr7-89081498-1	chr7	89081398	89081598	+	953.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	257289.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.04	1.51	5.13	2.82	0.82	2.2	6.31	11.02	4.13	4.02	2.01	2.82
Merged-chr13-23717700-3	chr13	23717612	23717812	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-6858.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.46	13.08	14.26	18.9	7.77	3.45	14.62	9.73	12.19	12.55	24.62	11.9
Merged-chr15-53563100-3	chr15	53562975	53563175	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	51204.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	13.33	17.61	19.4	12.87	13.09	13.17	13.62	10.82	16.33	18.58	17.08	14.1
Merged-chr7-68756988-3	chr7	68756892	68757092	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7754.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	20.19	47.54	45.64	24.94	21.68	30.1	18.93	10.77	30.68	22.09	24.62	8.77
Merged-chr16-30252265-3	chr16	30252165	30252365	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15267.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	16.56	14.59	13.12	12.87	12.68	19.44	5.98	20.58	20.26	18.08	32.16	10.96
Merged-chr1-131501811-2	chr1	131501718	131501918	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	25543.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	12.52	11.57	14.26	0.0	3.68	15.99	1.99	4.65	17.51	15.06	4.02	4.39
Merged-chr13-85596822-1	chr13	85596722	85596922	+	953.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-307336.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.63	3.02	3.42	0.8	3.68	1.57	8.3	10.26	5.51	4.52	10.55	3.45
Merged-chr8-75103112-1	chr8	75103012	75103212	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER67A|LTR|ERV1	-6397.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.88	7.55	0.57	9.25	10.64	12.23	2.33	3.79	8.85	20.59	2.51	3.13
Merged-chr10-81136992-3	chr10	81136910	81137110	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	CpG	739.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	27.46	20.63	22.25	8.45	22.91	25.09	18.6	19.32	38.94	54.73	46.23	30.7
Merged-chr2-31119219-3	chr2	31119138	31119338	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-22738.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	21.0	18.11	15.97	15.28	27.0	33.55	6.64	7.74	13.96	33.14	16.08	6.27
Merged-chr7-16175328-3	chr7	16175212	16175412	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-83.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	14.94	15.34	9.13	15.69	22.09	21.95	10.96	16.26	16.13	15.57	17.59	13.16
Merged-chr9-40501655-3	chr9	40501565	40501765	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	29718.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	54.92	70.18	59.9	56.71	69.96	93.44	65.11	80.27	16.33	15.57	20.6	9.71
Merged-chr18-39635833-3	chr18	39635725	39635925	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137672.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	15.34	13.58	20.54	12.87	17.59	18.5	19.6	12.98	22.82	19.58	23.62	7.52
Merged-chr1-171915808-3	chr1	171915708	171915908	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151536, intron 1 of 2)	RMER15-int|LTR|ERVL	-1654.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	24.63	31.94	22.25	15.69	15.55	39.82	15.61	8.05	32.65	11.55	20.6	5.95
Merged-chr14-30190590-3	chr14	30190481	30190681	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 4 of 46)	L1VL4|LINE|L1	162905.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	18.17	8.55	5.13	10.46	15.55	12.54	13.29	7.49	14.16	13.05	22.11	11.59
Merged-chr8-120818249-3	chr8	120818157	120818357	+	952.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79618.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	22.61	11.07	21.68	20.91	28.64	26.34	24.58	46.26	18.29	11.55	19.6	13.78
Merged-chr15-5496145-3	chr15	5496043	5496243	+	952.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-175.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	17.77	19.62	11.41	15.69	17.18	18.81	21.59	22.23	32.65	34.65	37.18	20.68
Merged-chr19-11818217-6	chr19	11818035	11818235	+	952.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	1268.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	15.75	8.8	11.41	10.86	19.23	28.22	7.31	15.9	9.05	19.58	10.55	9.08
Merged-chr1-123606260-2	chr1	123606168	123606368	+	952.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	439291.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.85	5.79	18.25	20.11	13.5	9.09	18.93	37.93	0.0	2.01	4.52	0.31
Merged-chr4-156087579-3	chr4	156087474	156087674	+	952.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22424.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	16.15	9.06	21.68	12.87	17.18	16.62	11.96	19.85	23.6	10.04	23.11	14.1
Merged-chr5-81076577-3	chr5	81076492	81076692	+	952.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	54999.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.25	11.07	12.55	14.48	18.82	14.11	14.28	29.24	15.34	3.01	21.1	5.33
Merged-chr1-45858218-3	chr1	45858108	45858308	+	952.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63042.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	27.05	25.15	33.66	31.77	42.55	59.89	34.55	42.34	31.67	27.62	25.63	8.77
Merged-chr5-139197183-3	chr5	139197073	139197273	+	952.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3464.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	22.61	23.14	10.27	32.58	35.18	44.21	28.9	23.61	38.55	28.62	37.18	14.1
Merged-chr6-47621209-3	chr6	47621118	47621318	+	952.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26188.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	13.73	17.61	14.83	21.32	13.91	35.12	15.94	27.87	15.14	20.59	15.58	22.56
Merged-chr2-35209620-5	chr2	35209536	35209736	+	952.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8516.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	8.08	15.34	6.85	8.45	13.5	10.35	10.96	3.98	6.29	13.56	6.53	8.14
Merged-chr15-59845379-4	chr15	59845290	59845490	+	952.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50431.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.63	3.77	7.42	5.63	11.86	13.17	21.92	15.36	8.85	5.02	11.05	11.59
Merged-chr12-32339966-2	chr12	32339877	32340077	+	952.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-38812.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	7.67	5.79	11.41	17.29	10.64	2.82	8.3	10.01	19.08	8.54	18.59	6.27
Merged-chr17-43069041-1	chr17	43068941	43069141	+	952.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	52486.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.23	6.04	3.99	10.46	13.5	11.29	15.61	12.98	0.79	2.01	2.01	0.63
Merged-chr1-120076495-3	chr1	120076394	120076594	+	952.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-2714.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	13.73	22.64	19.97	12.07	18.41	22.26	12.29	21.53	21.05	16.07	18.59	19.11
Merged-chr7-17059014-1	chr7	17058914	17059114	+	952.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162950, intron 1 of 14)	MIR|SINE|MIR	-2335.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	5.65	4.02	1.14	6.84	5.32	6.27	2.33	5.27	17.9	14.56	15.58	12.84
Merged-chr4-8913310-3	chr4	8913201	8913401	+	952.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161977.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	21.8	12.83	14.26	22.12	16.77	9.41	15.28	14.33	29.9	17.57	31.66	16.29
Merged-chr10-84388838-2	chr10	84388739	84388939	+	952.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	51632.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	14.54	9.56	17.11	15.69	12.27	10.03	15.94	12.7	8.85	5.02	6.53	4.07
Merged-chr10-37364691-3	chr10	37364585	37364785	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-225759.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	23.82	13.33	26.81	35.8	38.86	42.96	29.56	49.96	28.52	49.21	44.22	24.75
Merged-chr13-30725104-3	chr13	30725023	30725223	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24110.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	27.05	23.39	18.25	5.63	20.46	34.18	18.93	15.14	22.82	34.14	23.62	12.53
Merged-chr10-122800515-3	chr10	122800407	122800607	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	121192.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	6.46	8.8	14.83	13.27	22.91	14.74	20.26	34.04	15.54	24.1	27.64	24.75
Merged-chr11-58092740-3	chr11	58092633	58092833	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11237.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	14.54	14.34	12.55	16.09	20.46	7.84	12.95	10.65	22.62	12.55	18.59	10.34
Merged-chr12-32306564-3	chr12	32306422	32306622	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72267.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	12.52	21.38	17.11	10.46	30.27	37.32	22.59	25.57	58.22	33.14	55.78	24.12
Merged-chr4-46451558-3	chr4	46451464	46451664	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	CpG	638.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	16.15	16.1	12.55	18.5	17.59	20.38	12.29	14.1	21.44	22.59	29.65	22.87
Merged-chr2-11438438-3	chr2	11438336	11438536	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39936.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	7.27	14.34	13.12	11.66	35.59	23.83	39.53	40.77	20.46	18.58	30.65	27.88
Merged-chr6-115809079-3	chr6	115808969	115809169	+	952.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172086)	promoter-TSS (NM_172086)	-326.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	18.17	11.32	11.41	13.27	19.64	16.31	15.28	18.59	17.51	16.07	21.61	14.1
Merged-chr3-55293567-2	chr3	55293479	55293679	+	952.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	51215.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	6.86	2.77	19.4	4.42	18.82	11.92	11.29	16.43	15.93	23.6	28.64	21.3
Merged-chr13-60722895-3	chr13	60722792	60722992	+	952.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 10 of 26)	intron (NM_134062, intron 10 of 26)	63472.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	21.8	15.34	21.11	14.88	27.0	26.97	17.61	30.14	13.57	12.05	24.62	16.29
Merged-chr17-8163579-2	chr17	8163492	8163692	+	952.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1926.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	21.0	8.8	12.55	18.5	13.09	15.05	3.99	8.92	4.33	7.03	7.54	5.64
Merged-chr9-107575092-1	chr9	107574992	107575192	+	952.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1835.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	0.4	2.52	2.85	1.61	1.23	2.2	1.33	1.85	15.34	37.16	21.61	14.41
Merged-chr1-184542500-3	chr1	184542393	184542593	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	15198.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	17.36	16.85	23.96	26.14	23.73	10.66	20.93	30.25	29.9	12.05	34.67	14.41
Merged-chr5-118465133-3	chr5	118465028	118465228	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95591.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	12.52	13.33	11.41	7.64	25.36	29.16	12.95	25.77	15.93	18.58	22.11	14.72
Merged-chr14-52119370-3	chr14	52119232	52119432	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023879, exon 4 of 25)	exon (NM_023879, exon 4 of 25)	8429.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	10.5	10.06	12.55	8.85	9.0	7.53	5.65	7.12	17.7	15.06	12.56	13.16
Merged-chr18-39519950-3	chr18	39519848	39520048	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32703.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	10.5	13.08	10.84	9.65	15.14	15.05	12.95	16.71	19.67	27.11	33.16	18.8
Merged-chr3-18641886-3	chr3	18641795	18641995	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-161418.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	4.85	5.28	14.26	17.7	37.64	25.71	47.17	85.93	43.47	31.13	68.34	38.53
Merged-chr12-91008389-3	chr12	91008286	91008486	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 25 of 25)	intron (NM_181815, intron 25 of 25)	-37462.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	14.94	10.56	25.1	16.89	24.14	19.44	34.21	36.28	21.83	13.56	23.62	13.47
Merged-chr15-97774410-1	chr15	97774310	97774510	+	952.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6744.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	9.69	6.29	7.99	6.03	17.59	10.98	14.95	15.84	8.85	6.03	6.03	3.13
Merged-chr2-31715897-3	chr2	31715768	31715968	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	27331.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	33.11	22.64	32.52	27.35	18.0	41.71	44.18	39.95	23.41	6.03	19.09	10.96
Merged-chr11-4989364-2	chr11	4989264	4989464	+	952.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	2540.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	13.73	15.59	16.54	18.5	12.68	9.72	4.32	16.43	8.26	1.0	6.53	3.76
Merged-chr10-67031397-2	chr10	67031300	67031500	+	952.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	26325.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	9.29	15.85	6.85	3.62	18.41	28.22	13.62	19.15	32.85	12.55	44.22	17.23
Merged-chr4-40773321-3	chr4	40773220	40773420	+	952.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15435.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	10.9	10.56	13.12	14.08	24.14	19.44	12.62	20.92	25.57	20.59	17.08	18.17
Merged-chr16-55734503-3	chr16	55734407	55734607	+	952.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87631.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	22.21	16.1	10.27	18.9	22.5	30.73	20.59	27.62	26.95	35.65	25.12	24.43
Merged-chr15-101248127-3	chr15	101248034	101248234	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18712.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	14.13	8.05	21.68	15.69	14.32	19.76	17.27	28.32	29.7	25.11	41.71	25.69
Merged-chr8-46745689-3	chr8	46745598	46745798	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	5953.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.67	12.58	27.38	22.12	24.14	15.68	9.63	23.55	17.7	18.08	23.11	20.36
Merged-chr11-59540307-3	chr11	59540197	59540397	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1272.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	19.38	3.77	14.83	16.49	29.86	14.74	13.62	24.08	20.46	22.09	27.13	19.11
Merged-chrX-9489564-3	chrX	9489486	9489686	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20262.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	4.44	5.03	22.25	19.31	18.0	7.21	15.28	25.43	11.8	5.02	16.08	10.02
Merged-chr15-77840680-3	chr15	77840572	77840772	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	U6|snRNA|snRNA	1503.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	16.15	7.8	19.4	14.88	15.96	13.8	10.3	16.43	20.26	21.09	34.17	17.23
Merged-chr8-94745540-3	chr8	94745439	94745639	+	952.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009137)	promoter-TSS (NM_009137)	-145.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	28.27	39.49	34.8	12.87	13.5	39.51	14.28	11.69	56.65	76.82	67.84	15.04
Merged-chr3-121723284-4	chr3	121723122	121723322	+	952.53125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010171)	promoter-TSS (NM_010171)	-315.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	3.23	6.04	3.99	11.66	2.45	4.39	12.62	5.13	9.64	17.07	20.1	6.89
Merged-chr15-75887684-3	chr15	75887591	75887791	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282443, intron 3 of 13)	intron (NM_001282443, intron 3 of 13)	1032.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	22.61	8.8	22.25	17.7	20.86	24.77	16.94	19.79	32.06	25.11	37.18	18.48
Merged-chr2-57116129-2	chr2	57116030	57116230	+	952.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-1092.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	6.06	4.78	4.56	3.62	11.05	12.23	9.97	11.83	11.6	7.03	21.61	10.96
Merged-chr13-37346032-3	chr13	37345898	37346098	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	653.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	24.63	39.24	23.39	12.47	26.18	34.49	11.96	13.07	25.57	33.64	36.18	19.74
Merged-chr6-117817181-3	chr6	117817093	117817293	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23988.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	10.9	8.55	21.68	18.1	21.27	23.52	12.62	28.71	17.11	26.11	22.61	22.56
Merged-chr5-48331621-1	chr5	48331521	48331721	+	952.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40771.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.0	0.75	1.71	9.25	16.36	13.17	24.91	23.5	3.74	4.02	4.52	1.88
Merged-chr8-45410305-3	chr8	45410183	45410383	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357316)	promoter-TSS (NM_001357316)	97.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	21.0	15.34	19.97	17.29	24.55	18.81	15.94	19.93	23.6	13.05	12.56	13.78
Merged-chr2-152709259-3	chr2	152709174	152709374	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001159551)	TTS (NM_001159551)	22126.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	18.57	7.8	14.26	20.91	22.09	18.5	13.29	22.26	26.75	14.06	33.16	21.3
Merged-chr1-184851978-3	chr1	184851865	184852065	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6118.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	13.73	14.59	9.7	9.65	15.96	15.99	4.65	13.68	16.52	18.58	25.63	20.68
Merged-chr2-59397698-3	chr2	59397610	59397810	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-11028.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	11.71	12.83	22.25	14.88	25.77	26.34	16.94	25.29	35.6	21.59	26.13	20.99
Merged-chr3-27237424-3	chr3	27237292	27237492	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	54388.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	9.69	9.56	5.7	14.48	12.27	19.76	6.31	10.46	23.8	18.58	15.58	14.41
Merged-chr11-29428991-3	chr11	29428902	29429102	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176841, intron 5 of 31)	MIRb|SINE|MIR	54830.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	14.94	10.06	16.54	26.95	20.46	12.23	20.59	40.04	28.13	29.62	30.65	14.72
Merged-chr8-68212233-3	chr8	68212142	68212342	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64286.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	20.59	4.28	19.97	28.96	29.46	13.48	26.57	52.4	23.8	20.08	35.68	24.43
Merged-chr19-32779335-3	chr19	32779222	32779422	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	21745.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	19.38	10.56	23.96	20.51	18.82	12.54	17.27	20.83	21.44	18.08	19.09	12.84
Merged-chr2-128337606-5	chr2	128337539	128337739	+	952.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	91712.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	4.04	12.32	3.99	8.04	12.27	8.47	2.99	6.76	11.8	14.06	19.6	12.84
Merged-chr2-28796512-2	chr2	28796418	28796618	+	952.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033874, intron 11 of 12)	intron (NM_001033874, intron 11 of 12)	43842.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	12.52	12.83	15.97	20.51	21.27	15.37	17.27	15.48	8.26	4.52	7.54	6.27
Merged-chr17-70829813-2	chr17	70829718	70829918	+	952.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	16959.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.25	4.02	9.13	14.08	16.77	14.74	6.98	16.07	12.98	19.58	23.11	18.17
Merged-chr10-8883932-3	chr10	8883805	8884005	+	952.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2165.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	18.17	24.9	21.68	13.67	30.27	35.43	29.23	18.39	21.05	37.16	14.07	8.14
Merged-chr4-66843471-3	chr4	66843382	66843582	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	15931.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	27.86	27.42	31.95	41.43	52.37	46.72	27.57	50.38	25.18	16.57	27.13	7.83
Merged-chr2-145740211-3	chr2	145740119	145740319	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	39024.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	18.17	8.8	33.09	9.65	30.27	30.42	29.9	36.45	28.72	27.11	56.78	18.48
Merged-chr4-32570966-5	chr4	32570866	32571066	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	696.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.85	7.04	25.1	8.45	7.36	10.35	12.29	12.11	13.57	5.52	27.64	12.22
Merged-chr12-35641135-3	chr12	35641025	35641225	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	45179.0	NR_045051	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	31.09	32.45	24.53	20.11	28.64	31.04	13.95	15.17	24.98	25.11	13.06	12.22
Merged-chr13-113013445-3	chr13	113013306	113013506	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19538.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	11.31	14.84	16.54	8.04	17.59	13.8	22.92	15.34	22.42	23.6	26.13	11.59
Merged-chr3-51518610-3	chr3	51518516	51518716	+	952.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_080793, exon 8 of 8)	3' UTR (NM_080793, exon 8 of 8)	34650.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	14.13	8.3	15.4	13.27	23.32	30.73	21.26	31.54	12.98	16.57	18.09	14.1
Merged-chr1-34828106-3	chr1	34828023	34828223	+	952.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	14927.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	12.52	12.07	23.96	12.07	59.32	37.32	65.44	81.31	57.43	39.16	60.3	46.36
Merged-chr15-96552173-2	chr15	96552073	96552273	+	952.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89789.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	10.9	4.78	5.13	4.83	14.73	12.86	10.96	14.64	21.05	15.57	28.14	9.4
Merged-chr4-149701585-3	chr4	149701473	149701673	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	56.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	10.5	12.07	13.69	14.48	6.14	20.38	10.63	14.92	42.48	27.11	48.74	20.99
Merged-chr9-89197646-3	chr9	89197558	89197758	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	-1615.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.81	14.59	18.83	15.28	10.23	23.52	15.61	11.69	18.88	11.55	13.57	5.64
Merged-chr8-117453744-3	chr8	117453638	117453838	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106045)	TTS (NR_106045)	715.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	18.98	8.3	26.81	30.57	27.82	21.01	20.59	36.53	34.22	38.66	46.23	24.43
Merged-chr12-99511921-3	chr12	99511839	99512039	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-51902.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	26.65	25.91	35.37	35.39	21.27	19.76	20.59	25.21	50.55	27.62	13.06	20.36
Merged-chr6-124737197-3	chr6	124737100	124737300	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 1 of 15)	MIRb|SINE|MIR	1509.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	14.94	21.88	19.97	26.14	15.14	7.53	1.99	9.62	50.75	33.64	24.62	31.01
Merged-chr8-122550343-3	chr8	122550244	122550444	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	985.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	12.11	11.07	20.54	8.04	12.27	11.6	1.99	7.6	17.11	11.05	4.02	9.71
Merged-chr8-70158715-3	chr8	70158601	70158801	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045484, intron 1 of 8)	CpG	5940.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	19.79	22.13	14.83	21.72	8.59	13.48	8.3	14.97	26.75	25.61	15.07	15.98
Merged-chr18-50045018-1	chr18	50044918	50045118	+	952.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155293, intron 2 of 3)	MER119|DNA|hAT-Charlie	-8264.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.25	3.52	3.42	4.42	4.91	14.42	11.63	13.01	8.85	8.54	3.01	2.19
Merged-chr6-72261474-3	chr6	72261374	72261574	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25897.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	23.42	14.34	17.68	15.28	11.05	23.52	11.96	10.35	23.41	15.06	21.61	15.04
Merged-chr5-32744772-3	chr5	32744680	32744880	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	1562.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	23.02	10.82	18.25	12.07	29.05	27.59	16.28	22.18	20.06	26.61	20.6	17.54
Merged-chr11-116019086-4	chr11	116019037	116019237	+	952.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5367.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	10.9	11.32	13.69	10.05	17.18	28.85	5.31	2.07	13.96	12.05	8.54	7.21
Merged-chr15-101978665-3	chr15	101978584	101978784	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24397.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	23.42	9.56	25.1	15.28	9.41	20.7	13.62	23.58	25.57	10.54	7.54	13.47
Merged-chr15-78579657-3	chr15	78579566	78579766	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1923.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	18.17	11.82	11.41	18.5	15.14	14.42	11.63	14.41	19.08	26.11	14.57	15.04
Merged-chr10-88372665-3	chr10	88372580	88372780	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6732.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	31.09	29.68	27.38	14.48	17.59	50.49	20.93	8.33	29.11	35.15	23.62	17.54
Merged-chr6-30229144-3	chr6	30229048	30229248	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169576, intron 3 of 4)	intron (NM_001169576, intron 3 of 4)	14655.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	13.33	10.31	17.11	21.32	8.18	11.29	11.29	24.73	26.16	8.03	23.11	24.12
Merged-chr2-118602041-3	chr2	118601924	118602124	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009773, intron 2 of 22)	PB1D10|SINE|Alu	3813.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	12.92	19.12	11.98	13.67	24.14	40.45	14.28	17.86	35.4	26.61	35.68	24.43
Merged-chr2-35506822-3	chr2	35506730	35506930	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45381.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	25.44	17.1	32.52	34.99	17.18	9.41	13.62	33.67	16.33	12.55	21.1	12.84
Merged-chr1-10232407-3	chr1	10232277	10232477	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001102430, exon 1 of 38)	exon (NM_001102430, exon 1 of 38)	293.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	10.9	17.1	14.83	16.49	18.41	15.68	19.6	20.47	15.34	12.05	37.18	14.1
Merged-chr4-132211701-3	chr4	132211582	132211782	+	952.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145393, intron 1 of 4)	CpG-10406	574.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	23.02	20.12	15.4	9.25	15.55	23.52	18.93	11.52	16.72	11.55	21.61	25.06
Merged-chr2-58184318-2	chr2	58184212	58184412	+	952.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20338.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	7.67	1.01	0.0	8.85	30.68	20.38	8.3	18.06	12.39	17.57	23.11	10.96
Merged-chr1-135540459-3	chr1	135540366	135540566	+	952.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	44889.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	8.08	16.85	11.41	24.13	15.14	20.7	11.29	15.22	14.36	18.08	26.63	7.83
Merged-chr1-171130056-2	chr1	171129946	171130146	+	952.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025321, intron 5 of 5)	intron (NM_025321, intron 5 of 5)	8385.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	15.75	12.58	17.11	12.07	15.14	19.13	10.3	20.64	15.14	6.03	7.54	5.95
Merged-chr6-51567487-2	chr6	51567388	51567588	+	952.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22195.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	11.71	15.59	3.42	3.62	18.41	18.5	4.32	9.45	6.1	7.03	5.02	0.94
Merged-chr1-52734380-1	chr1	52734280	52734480	+	952.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7022.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	4.04	5.03	3.42	4.42	5.73	29.48	12.95	9.28	3.34	7.53	5.02	8.14
Merged-chr9-123926299-3	chr9	123926204	123926404	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42388.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	21.8	15.34	22.82	14.48	18.0	31.04	7.97	17.33	26.75	18.08	29.65	15.04
Merged-chr1-191259321-3	chr1	191259208	191259408	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34854.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	14.94	8.3	13.69	24.13	21.68	19.13	22.59	25.54	28.72	6.03	32.66	20.99
Merged-chr8-13964656-3	chr8	13964558	13964758	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	10119.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	14.54	25.15	11.98	21.72	14.73	23.2	20.93	19.85	18.49	33.14	52.26	15.98
Merged-chr2-93461007-3	chr2	93460896	93461096	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	855.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	26.65	28.93	55.9	12.07	15.14	21.01	12.95	11.5	35.21	24.1	20.1	10.34
Merged-chr9-77688941-3	chr9	77688840	77689040	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52208.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	10.09	17.61	24.53	25.34	21.27	13.8	26.24	23.5	16.52	15.57	21.1	1.25
Merged-chr13-8839418-3	chr13	8839337	8839537	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	31607.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	16.15	11.82	33.09	22.12	18.0	14.74	12.95	23.02	29.5	11.55	21.1	23.18
Merged-chr15-95906511-3	chr15	95906414	95906614	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-76442.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	15.75	11.57	10.27	12.47	17.18	17.25	15.61	20.44	13.77	7.03	36.18	18.17
Merged-chr1-134435620-3	chr1	134435513	134435713	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19918.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	12.11	14.84	15.4	15.69	16.77	20.7	12.29	20.41	42.09	20.59	29.14	23.18
Merged-chrX-71284929-3	chrX	71284835	71285035	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164192, intron 7 of 13)	intron (NM_001164192, intron 7 of 13)	69861.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	13.33	9.06	16.54	11.66	17.59	17.56	14.28	16.4	14.36	19.08	16.58	5.33
Merged-chr2-128741148-3	chr2	128741059	128741259	+	952.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	42244.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	18.17	27.17	38.79	13.27	23.73	21.32	16.94	20.22	23.6	31.13	15.07	21.3
Merged-chr9-45102803-2	chr9	45102702	45102902	+	952.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15074.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	15.34	16.6	17.11	8.04	16.36	12.54	9.63	10.71	1.57	0.5	0.0	1.88
Merged-chr9-40762507-3	chr9	40762401	40762601	+	952.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-38772.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	44.01	22.39	30.8	42.63	30.68	35.43	22.59	19.04	31.67	17.07	14.07	12.84
Merged-chr10-111771493-3	chr10	111771401	111771601	+	952.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102875.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	13.33	10.56	26.81	18.5	18.82	15.68	17.27	29.52	15.14	10.04	33.67	12.22
Merged-chr4-89458080-2	chr4	89457995	89458195	+	952.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147063.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	8.08	4.78	10.27	6.44	13.09	26.65	29.23	31.04	18.29	14.56	29.65	11.28
Merged-chr9-20642723-3	chr9	20642571	20642771	+	952.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153857)	promoter-TSS (NR_153857)	-46.0	NM_001361025	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	10.9	16.85	12.55	16.89	15.96	10.35	9.63	9.34	13.57	12.55	12.56	8.77
Merged-chr1-118567843-3	chr1	118567736	118567936	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 33 of 39)	intron (NM_001359330, intron 33 of 39)	-60109.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	12.52	15.34	18.25	14.48	16.77	22.58	13.95	41.69	21.05	18.58	28.64	19.11
Merged-chr6-120954147-3	chr6	120954058	120954258	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-4686.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	22.21	12.83	21.68	25.34	22.91	13.8	17.61	31.63	14.95	13.05	21.1	16.92
Merged-chr14-76114806-3	chr14	76114698	76114898	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3907.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	10.9	16.85	15.97	9.65	16.36	7.21	15.61	21.34	30.68	18.08	23.62	17.86
Merged-chr4-132513608-3	chr4	132513525	132513725	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3169.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	24.63	11.32	14.26	15.69	28.23	20.07	9.97	25.85	27.54	19.08	16.58	14.72
Merged-chr10-26374240-3	chr10	26374204	26374404	+	952.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347467)	promoter-TSS (NM_001347467)	-232.0	NM_001359254	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	14.94	14.34	24.53	18.5	15.96	9.09	18.27	13.07	11.21	18.08	10.55	6.89
Merged-chr12-99563670-4	chr12	99563562	99563762	+	952.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-179.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	12.92	9.31	7.99	15.69	11.86	18.19	7.64	10.15	23.21	19.08	35.68	13.47
Merged-chr7-3275987-3	chr7	3275876	3276076	+	952.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13062.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	12.11	9.56	34.23	22.12	13.91	14.42	4.98	21.25	21.83	23.1	36.18	14.72
Merged-chr9-40974227-3	chr9	40974135	40974335	+	952.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019465, intron 9 of 9)	MTEa|LTR|ERVL-MaLR	-9682.0	NM_001357359	70989.0	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	junctional cadherin complex regulator	protein-coding	19.38	17.61	22.25	25.34	13.09	24.46	17.27	26.44	26.75	18.58	39.7	9.4
Merged-chr17-56810454-3	chr17	56810362	56810562	+	952.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	20546.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	24.63	12.83	22.25	19.31	5.73	11.92	7.31	13.57	24.78	11.05	28.64	22.87
Merged-chr7-130968686-3	chr7	130968593	130968793	+	952.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	32490.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	28.27	33.45	42.21	21.72	14.73	7.53	11.63	13.09	21.05	25.61	33.67	22.24
Merged-chr3-139110233-3	chr3	139110123	139110323	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35022.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	23.82	9.06	28.52	22.93	16.77	13.48	12.29	23.3	19.87	17.07	21.61	10.34
Merged-chr19-11465064-3	chr19	11464994	11465194	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4274.0	NM_001166376	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	23.42	13.33	19.4	20.11	31.09	33.55	14.62	5.36	26.75	15.06	12.06	11.9
Merged-chr13-23745592-3	chr13	23745484	23745684	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175653)	promoter-TSS (NM_175653)	-63.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	18.98	19.12	11.41	20.91	18.41	25.09	15.61	15.2	23.21	28.12	48.24	16.29
Merged-chr5-23616637-3	chr5	23616553	23616753	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-82.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	16.56	19.87	21.11	9.65	25.36	11.29	12.95	14.72	17.31	16.07	25.12	12.84
Merged-chr12-9007186-3	chr12	9007099	9007299	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172470, intron 15 of 27)	intron (NM_172470, intron 15 of 27)	-22798.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	15.34	12.83	8.56	16.49	10.64	13.8	17.61	23.05	17.9	22.09	32.16	16.92
Merged-chr18-44383173-3	chr18	44383070	44383270	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	2670.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	13.73	13.83	22.25	11.66	15.96	9.09	12.29	16.77	14.75	12.05	21.61	15.04
Merged-chr1-135535498-3	chr1	135535386	135535586	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49869.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	17.77	20.88	14.26	11.26	18.82	17.87	19.6	16.82	20.46	23.1	30.65	10.02
Merged-chr19-53600901-2	chr19	53600791	53600991	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007790, intron 1 of 28)	CpG	495.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	13.73	8.3	13.12	16.49	11.86	9.72	9.63	11.58	17.31	14.56	26.63	11.59
Merged-chr4-6444049-3	chr4	6443945	6444145	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10226.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	8.08	15.34	19.4	13.27	19.64	17.56	16.94	23.83	21.44	22.09	26.13	15.35
Merged-chr3-27228246-3	chr3	27228158	27228358	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	45254.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	17.36	5.53	21.68	16.49	54.41	43.9	56.47	58.21	67.66	62.76	122.61	46.05
Merged-chr10-44729617-3	chr10	44729537	44729737	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-270889.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	45.63	34.71	29.66	14.88	36.0	55.82	27.24	23.8	55.07	55.23	42.21	21.62
Merged-chr4-55472804-2	chr4	55472694	55472894	+	952.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53952.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	6.46	11.07	2.85	4.83	4.91	11.92	6.31	11.94	23.6	21.59	27.13	6.89
Merged-chrX-71206323-3	chrX	71206216	71206416	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4451.0	NM_001164190	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	14.94	14.09	20.54	22.12	18.82	14.74	13.29	18.5	26.36	21.59	19.09	16.92
Merged-chr17-26544548-1	chr17	26544448	26544648	+	952.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16964.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.02	6.29	2.28	4.02	4.5	8.47	4.65	3.14	12.78	15.57	8.54	7.52
Merged-chr1-157411956-1	chr1	157411856	157412056	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027984)	promoter-TSS (NR_027984)	-396.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	12.92	17.36	22.25	13.27	8.18	4.08	11.29	5.55	14.36	10.04	17.08	5.64
Merged-chr18-46434623-3	chr18	46434524	46434724	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	31192.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	12.52	11.57	11.98	4.42	25.36	14.74	12.95	17.83	21.64	28.12	22.61	6.58
Merged-chr19-10287644-1	chr19	10287544	10287744	+	952.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	MLTR14|LTR|ERV1	17233.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.06	2.01	2.85	6.84	3.27	9.09	4.32	8.1	4.13	7.03	7.03	3.45
Merged-chr2-169700407-3	chr2	169700326	169700526	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	66780.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	9.69	9.06	16.54	16.89	27.0	26.97	19.27	32.94	48.39	33.14	36.68	49.18
Merged-chr11-86955878-1	chr11	86955778	86955978	+	952.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37884.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.85	4.53	11.98	8.85	10.64	4.7	4.65	12.25	0.98	1.0	6.53	7.21
Merged-chr19-34511286-3	chr19	34511211	34511411	+	951.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	16163.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	15.75	15.09	15.97	14.48	27.0	19.44	17.27	18.76	12.0	9.54	20.6	11.28
Merged-chr2-129625207-3	chr2	129625107	129625307	+	951.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29745.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	16.96	4.02	18.25	18.5	7.77	1.25	5.98	7.99	19.87	20.08	18.59	21.3
Merged-chr12-111071293-3	chr12	111071198	111071398	+	951.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198023, intron 2 of 11)	PB1|SINE|Alu	31500.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	17.77	18.36	12.55	7.64	20.86	41.71	13.95	20.3	17.9	22.09	12.56	11.9
Merged-chr17-32268863-2	chr17	32268767	32268967	+	951.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	15256.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	4.85	4.28	5.7	1.61	16.77	17.25	12.95	15.42	18.1	13.56	16.58	7.52
Merged-chr2-102986581-2	chr2	102986479	102986679	+	951.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84914.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.48	1.01	3.42	4.02	19.23	16.62	6.64	9.0	17.11	15.06	13.57	10.65
Merged-chr19-16133593-5	chr19	16133433	16133633	+	951.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	CpG	702.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	10.5	14.84	6.28	6.84	9.0	11.92	11.29	7.88	15.14	8.54	20.1	13.78
Merged-chr7-105739207-3	chr7	105739108	105739308	+	951.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1823.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	33.92	12.58	21.11	13.27	10.64	31.67	12.62	13.54	22.03	19.08	30.65	11.9
Merged-chr14-45291825-2	chr14	45291710	45291910	+	951.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015774, intron 13 of 15)	intron (NM_015774, intron 13 of 15)	26762.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	6.46	4.78	10.84	5.23	16.36	25.09	16.61	19.99	21.24	13.56	27.64	13.78
Merged-chr14-26441250-3	chr14	26441136	26441336	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 14 of 22)	PB1D10|SINE|Alu	83689.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	10.9	10.31	13.69	24.13	17.59	25.4	15.94	23.83	24.98	26.11	33.67	17.54
Merged-chr1-52100676-3	chr1	52100581	52100781	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308266, intron 18 of 24)	intron (NM_001308266, intron 18 of 24)	-18757.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	6.46	14.09	26.81	14.48	18.0	10.66	9.3	14.02	24.19	9.54	34.67	7.83
Merged-chr9-116088077-3	chr9	116087979	116088179	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	87284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	20.19	20.63	10.27	19.71	23.32	17.87	11.96	13.88	32.65	26.61	29.65	15.98
Merged-chr12-25303664-3	chr12	25303573	25303773	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174499.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	25.84	24.9	27.38	23.33	31.91	21.64	17.27	26.41	15.93	11.05	10.55	16.6
Merged-chr2-167271308-3	chr2	167271223	167271423	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30786.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	12.11	21.88	30.23	48.26	32.73	31.67	33.55	53.5	51.14	45.69	66.33	39.16
Merged-chr9-54555255-3	chr9	54555136	54555336	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	4843.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	29.48	21.38	18.25	26.14	15.96	27.59	17.94	16.63	18.1	19.58	27.13	10.65
Merged-chr13-99030765-3	chr13	99030669	99030869	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46204.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	14.54	16.35	19.97	18.9	17.59	21.64	12.29	18.95	24.78	13.56	21.61	12.84
Merged-chr9-90276391-3	chr9	90276285	90276485	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5616.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	19.38	13.58	17.68	9.65	11.45	16.31	11.29	15.59	30.49	27.11	30.65	17.86
Merged-chr16-23985553-3	chr16	23985450	23985650	+	951.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	3302.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	25.84	35.21	20.54	6.03	29.05	49.54	11.63	8.86	31.47	42.68	20.1	13.16
Merged-chr7-128129446-3	chr7	128129357	128129557	+	951.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-111.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	23.82	17.61	10.84	10.46	24.14	26.34	12.29	20.02	19.08	21.09	15.58	13.16
Merged-chr18-9485432-3	chr18	9485326	9485526	+	951.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35272.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	14.54	15.59	12.55	24.94	20.05	22.26	30.56	44.41	60.19	27.62	38.19	26.63
Merged-chr1-24553614-3	chr1	24553516	24553716	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	33821.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	12.11	9.56	9.13	11.26	19.23	24.15	18.93	31.18	34.22	17.57	35.68	15.04
Merged-chr9-63614307-3	chr9	63614219	63614419	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11673.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	12.52	10.31	25.67	22.12	15.55	13.17	14.62	22.18	22.82	16.07	17.08	11.9
Merged-chr2-163736118-3	chr2	163736014	163736214	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001272052, intron 2 of 11)	intron (NM_001272052, intron 2 of 11)	14125.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	33.52	11.07	29.09	32.18	22.09	27.28	20.93	36.28	12.98	16.57	16.08	22.87
Merged-chr8-46141077-3	chr8	46140985	46141185	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16939.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	10.5	19.12	21.68	26.14	28.64	22.26	35.87	40.57	25.18	34.14	39.7	33.21
Merged-chr9-32198925-3	chr9	32198835	32199035	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 9 of 21)	(CAAAA)n|Simple_repeat|Simple_repeat	-25314.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	17.77	10.56	22.25	31.77	12.68	16.31	13.62	15.87	25.37	31.13	12.06	10.96
Merged-chr15-72833793-3	chr15	72833652	72833852	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	L2|LINE|L2	-23428.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	8.08	4.78	24.53	11.26	8.18	12.86	11.63	11.33	19.47	16.57	23.62	14.41
Merged-chr5-100860846-3	chr5	100860745	100860945	+	951.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	14616.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	22.21	15.59	47.92	21.32	24.55	22.26	30.23	23.55	15.34	11.55	11.05	13.78
Merged-chr10-86887019-2	chr10	86886919	86887119	+	951.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108014.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.83	5.79	10.27	11.66	11.86	11.29	10.96	15.76	14.75	18.58	14.57	14.72
Merged-chr17-83277557-4	chr17	83277449	83277649	+	951.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62266.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	21.8	17.1	17.11	12.47	18.0	29.79	8.3	8.55	24.0	29.62	12.56	15.04
Merged-chr6-87525347-3	chr6	87525230	87525430	+	951.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	7929.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	23.42	8.05	34.23	23.73	29.05	26.34	24.58	51.17	21.44	23.1	13.06	17.54
Merged-chr2-138256647-3	chr2	138256541	138256741	+	951.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	57.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	21.8	28.93	9.7	32.98	36.82	23.2	38.53	36.95	22.03	28.62	34.67	24.12
Merged-chr17-28217817-3	chr17	28217723	28217923	+	951.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10045.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	18.98	10.82	11.98	14.88	17.18	21.95	12.62	19.93	15.54	16.57	25.12	14.1
Merged-chr17-48325919-3	chr17	48325830	48326030	+	951.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	9768.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	24.23	13.33	41.64	13.67	31.09	44.21	28.9	35.89	24.78	29.12	18.09	16.29
Merged-chr6-82797607-3	chr6	82797503	82797703	+	951.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23149.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	18.57	10.06	6.28	11.26	14.32	15.37	13.95	12.25	16.52	18.08	11.05	10.34
Merged-chr15-81536120-4	chr15	81536018	81536218	+	951.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	14.94	24.9	10.27	8.45	10.64	14.11	15.61	6.53	15.14	29.12	16.58	10.02
Merged-chr2-163575583-3	chr2	163575523	163575723	+	951.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26691.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	16.15	18.61	16.54	9.65	28.64	25.71	22.59	25.74	14.16	10.54	14.57	9.71
Merged-chr14-98406496-1	chr14	98406396	98406596	+	951.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-236731.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	8.48	2.01	4.56	13.27	13.91	11.6	17.27	30.11	1.38	0.5	2.01	3.76
Merged-chr1-155147461-3	chr1	155147358	155147558	+	951.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-644.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	38.76	13.58	25.67	12.07	32.32	17.87	27.9	38.27	35.6	18.58	22.61	20.36
Merged-chr12-84019229-3	chr12	84019131	84019331	+	951.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9729.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	15.75	14.09	14.26	15.69	13.5	23.2	9.3	16.37	24.19	37.16	30.65	17.86
Merged-chr4-135254947-1	chr4	135254847	135255047	+	951.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	17813.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	1.62	6.79	10.27	21.32	12.27	10.66	3.32	19.85	8.46	9.04	11.56	2.51
Merged-chr3-65930483-2	chr3	65930386	65930586	+	951.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27763.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.29	8.8	5.13	11.66	11.05	15.99	6.98	8.21	14.75	21.59	11.05	13.78
Merged-chr5-121597584-3	chr5	121597519	121597719	+	951.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178799)	TTS (NM_178799)	-3795.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	12.92	11.07	25.67	15.28	11.86	16.62	6.31	19.6	10.42	14.56	14.57	16.29
Merged-chr7-109613945-3	chr7	109613839	109614039	+	951.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001326, intron 1 of 19)	intron (NM_001001326, intron 1 of 19)	2629.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	31.5	26.41	27.38	12.87	18.41	22.26	13.95	12.56	30.49	31.13	24.62	9.08
Merged-chr1-156672897-3	chr1	156672780	156672980	+	951.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023141, intron 2 of 5)	RMER17C|LTR|ERVK	1459.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	20.19	21.88	26.24	22.93	40.5	21.95	18.93	32.36	22.23	15.06	22.11	6.58
Merged-chr10-53893244-3	chr10	53893134	53893334	+	951.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-142325.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	7.27	11.82	14.26	12.07	22.5	21.95	6.64	25.71	14.36	20.08	23.62	3.45
Merged-chr3-152555318-3	chr3	152555251	152555451	+	951.6000369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-111562.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	13.73	13.58	15.4	24.94	11.05	19.44	43.85	51.34	10.82	13.05	17.08	14.41
Merged-chr1-185277186-1	chr1	185277086	185277286	+	951.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163754, exon 30 of 35)	exon (NM_001163754, exon 30 of 35)	34211.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	7.67	5.79	5.7	2.01	43.36	12.23	32.55	41.22	3.34	1.0	1.51	0.31
Merged-chr7-74645757-3	chr7	74645659	74645859	+	951.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90979.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	14.54	10.31	18.25	4.02	7.36	13.8	9.97	13.54	34.22	21.09	31.15	12.53
Merged-chr4-75297665-3	chr4	75297573	75297773	+	951.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19381.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	12.11	20.37	26.81	21.72	5.32	10.98	5.31	20.3	31.86	26.11	37.18	13.47
Merged-chr7-80029817-3	chr7	80029691	80029891	+	951.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	3563.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	19.38	12.83	25.1	20.91	20.05	21.64	22.26	33.7	14.36	8.54	28.14	20.68
Merged-chr3-135630163-3	chr3	135630056	135630256	+	951.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	61391.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	17.36	12.58	29.09	22.12	16.36	19.44	18.27	20.33	14.95	13.05	45.22	14.1
Merged-chr1-79672043-3	chr1	79671947	79672147	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183027)	promoter-TSS (NM_183027)	-75.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	25.04	14.34	21.68	21.32	17.59	11.29	12.95	15.42	15.93	12.55	16.08	15.04
Merged-chr10-60259875-2	chr10	60259768	60259968	+	951.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17760.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	2.02	4.02	18.25	6.44	12.68	11.29	10.96	9.14	29.5	19.58	17.59	11.59
Merged-chr3-103130485-3	chr3	103130370	103130570	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177857, intron 1 of 18)	intron (NM_177857, intron 1 of 18)	2914.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	40.38	25.91	33.09	29.36	42.55	29.48	26.57	41.36	15.54	10.04	17.59	6.89
Merged-chr12-113026822-2	chr12	113026715	113026915	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	12307.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	11.31	13.58	11.98	22.93	16.36	13.17	10.63	15.67	14.55	3.01	5.53	7.83
Merged-chr18-17730452-3	chr18	17730347	17730547	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149457.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	14.13	16.6	20.54	13.67	54.82	42.33	29.9	53.78	34.42	33.64	24.12	14.72
Merged-chr13-59856939-3	chr13	59856869	59857069	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33822.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.67	14.84	19.4	15.69	26.59	22.26	28.57	22.57	14.36	22.59	9.04	12.22
Merged-chr11-29172226-3	chr11	29172171	29172371	+	951.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-636.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	13.33	10.06	10.27	15.69	12.27	12.23	9.3	14.16	9.44	14.06	18.59	8.46
Merged-chr6-29484897-3	chr6	29484810	29485010	+	951.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029985, exon 34 of 38)	exon (NM_001029985, exon 34 of 38)	13473.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	25.84	8.3	15.97	12.47	27.41	16.31	14.28	13.6	25.57	18.58	36.68	10.02
Merged-chr14-105501116-3	chr14	105500997	105501197	+	951.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	2309.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	14.13	20.63	15.97	10.46	9.82	23.2	12.95	14.24	23.01	20.59	31.66	11.28
Merged-chr9-40744407-3	chr9	40744327	40744527	+	951.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-56846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	25.04	25.15	17.11	40.22	57.68	60.52	39.53	36.14	13.96	13.56	14.57	8.77
Merged-chr6-30300537-3	chr6	30300439	30300639	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	4000.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	20.19	18.11	17.11	9.65	24.96	20.07	18.93	30.76	24.78	16.07	52.26	22.56
Merged-chr9-21136605-3	chr9	21136519	21136719	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5344.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	16.56	32.95	29.09	27.35	15.14	21.64	18.27	11.47	36.58	13.56	28.14	11.28
Merged-chr14-73140823-3	chr14	73140784	73140984	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1626.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	2.02	4.78	8.56	10.05	4.09	10.66	11.29	4.88	8.06	8.54	17.59	9.4
Merged-chr11-101172120-3	chr11	101172031	101172231	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-759.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	14.54	13.08	14.83	10.05	17.59	12.23	9.3	12.45	23.8	28.62	27.64	10.02
Merged-chr3-54668932-3	chr3	54668816	54669016	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23899.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	12.92	14.34	15.4	21.32	21.27	23.83	31.89	43.4	18.69	8.54	25.63	21.93
Merged-chr14-74908499-3	chr14	74908408	74908608	+	951.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	39369.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	16.56	16.35	17.11	14.88	13.5	14.74	16.28	14.13	15.34	13.56	13.06	10.34
Merged-chrX-162902059-5	chrX	162901895	162902095	+	951.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033143)	promoter-TSS (NR_033143)	-176.0	NR_033143	55936.0	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	8.88	8.05	6.28	4.42	3.27	6.59	8.97	6.87	15.93	9.54	5.53	9.71
Merged-chr13-117031856-2	chr13	117031766	117031966	+	951.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6350.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	25.84	21.38	21.11	21.72	9.82	14.74	9.3	9.0	7.87	10.04	5.53	4.7
Merged-chr1-94058514-3	chr1	94058399	94058599	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-5946.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	21.4	15.59	18.25	45.85	30.27	15.99	42.19	22.54	5.31	11.55	15.58	15.66
Merged-chr2-160363344-1	chr2	160363244	160363444	+	951.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010658)	TTS (NM_010658)	3721.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	9.69	3.02	1.71	4.83	10.64	13.17	11.96	9.03	6.88	8.03	9.55	8.46
Merged-chr12-98835661-3	chr12	98835569	98835769	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	64647.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	32.3	23.9	10.27	9.65	23.73	42.96	18.6	14.86	51.53	38.66	43.72	25.37
Merged-chr13-97441332-3	chr13	97441202	97441402	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	6332.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	25.04	17.36	18.25	31.37	10.23	11.92	10.63	13.79	13.18	7.53	17.08	9.4
Merged-chr16-73597571-3	chr16	73597439	73597639	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	744528.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	10.5	11.57	11.98	28.96	22.09	16.31	17.94	22.01	16.33	18.08	16.08	13.47
Merged-chr8-94935338-3	chr8	94935238	94935438	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033468, intron 6 of 11)	MLT1K|LTR|ERVL-MaLR	11644.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	17.77	14.59	13.69	16.89	12.27	5.02	9.97	10.21	16.92	17.07	24.62	18.17
Merged-chr12-98270126-6	chr12	98270014	98270214	+	951.2824099999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	1479.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	13.33	23.64	9.7	6.84	13.09	15.05	5.65	7.21	15.34	5.52	20.6	4.07
Merged-chr7-107607971-3	chr7	107607878	107608078	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	1134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	13.73	18.11	11.41	13.67	15.96	20.7	10.96	17.27	30.68	23.1	17.08	16.6
Merged-chr9-66915593-3	chr9	66915494	66915694	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	4111.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	18.98	18.61	15.97	10.86	13.91	33.24	11.96	16.99	28.52	17.07	34.67	12.84
Merged-chr15-81905194-3	chr15	81905108	81905308	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080633, intron 7 of 17)	Tigger20a|DNA|TcMar-Tigger	21005.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	23.02	24.4	10.27	6.84	12.27	23.52	12.62	11.75	37.37	25.61	39.7	13.16
Merged-chr14-103826561-3	chr14	103826472	103826672	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17129.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	27.86	13.08	11.98	32.98	26.59	19.44	17.27	38.16	17.9	24.1	29.14	13.78
Merged-chr15-99498137-3	chr15	99498028	99498228	+	951.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-23398.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	20.59	28.93	50.2	12.47	43.36	31.36	17.61	23.66	39.14	29.12	42.21	18.48
Merged-chr14-47187959-6	chr14	47187863	47188063	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	1450.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	6.06	8.3	10.27	4.02	4.5	3.14	10.63	6.95	19.67	15.57	15.07	12.84
Merged-chr8-85408287-3	chr8	85408179	85408379	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025722)	TTS (NM_025722)	24562.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	17.77	18.36	11.98	22.52	27.0	15.37	16.28	14.55	21.24	22.59	14.07	17.54
Merged-chr13-58478610-3	chr13	58478517	58478717	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75274.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	15.34	10.56	26.24	19.71	19.64	10.98	24.25	41.66	12.19	23.6	29.14	18.17
Merged-chr5-38509041-3	chr5	38508937	38509137	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-6885.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	19.79	11.32	18.83	20.11	17.18	12.54	17.94	10.12	22.62	19.58	17.59	7.52
Merged-chr14-64658543-3	chr14	64658448	64658648	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	6017.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	18.17	17.86	13.69	9.65	12.68	16.62	12.29	12.42	17.7	17.07	20.6	11.9
Merged-chr12-79138104-3	chr12	79137995	79138195	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	7307.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	24.23	8.55	29.09	17.29	74.05	53.93	52.15	71.58	45.83	28.12	40.7	29.13
Merged-chr17-78419362-3	chr17	78419237	78419437	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1185.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	24.63	18.61	30.23	41.43	27.41	27.91	34.21	52.88	32.85	17.57	47.23	27.25
Merged-chr4-32363647-3	chr4	32363564	32363764	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53771.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	27.05	21.38	73.02	76.82	38.05	50.17	90.02	126.14	24.39	11.05	29.14	13.47
Merged-chr2-11395159-3	chr2	11395061	11395261	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	RLTR25B|LTR|ERVK	3339.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	7.27	13.58	14.26	9.25	25.36	41.39	23.58	21.28	23.41	36.65	32.66	13.47
Merged-chr19-34662255-3	chr19	34662153	34662353	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	21364.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	13.33	14.34	17.11	19.71	14.73	18.19	28.9	14.36	12.0	17.07	10.05	8.14
Merged-chr7-49454788-3	chr7	49454668	49454868	+	951.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	182067.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	19.79	13.83	21.68	23.73	24.14	32.61	27.57	31.6	10.23	13.56	29.65	15.98
Merged-chr7-125623379-3	chr7	125623248	125623448	+	951.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	19919.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	15.34	14.59	24.53	18.1	55.23	49.54	74.07	78.7	12.98	18.58	17.59	5.33
Merged-chr9-96675640-3	chr9	96675527	96675727	+	951.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43818.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	17.36	12.83	15.4	24.13	13.91	32.93	11.96	23.92	17.31	15.57	19.6	9.08
Merged-chr16-24625126-2	chr16	24624996	24625196	+	951.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95782.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	18.98	8.8	10.84	17.7	6.95	18.19	3.65	6.42	19.08	9.54	10.05	10.96
Merged-chr14-46179226-2	chr14	46179127	46179327	+	951.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95200.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	15.34	15.59	17.11	18.9	22.91	21.32	13.95	20.66	1.77	0.0	0.0	0.0
Merged-chr1-138267883-3	chr1	138267795	138267995	+	951.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5843.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	18.98	14.59	12.55	13.67	14.32	16.93	10.96	22.49	26.55	28.12	23.11	13.16
Merged-chr10-94609415-3	chr10	94609321	94609521	+	951.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23222.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	13.73	12.32	9.7	6.84	17.59	15.99	10.96	12.48	19.08	14.06	20.6	4.07
Merged-chr4-141761765-3	chr4	141761676	141761876	+	951.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172338)	TTS (NM_172338)	15101.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	14.54	17.1	23.96	20.91	20.86	27.28	15.28	16.29	14.16	14.56	15.07	5.64
Merged-chr5-111219851-2	chr5	111219745	111219945	+	951.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-110852.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	16.15	16.1	22.25	12.07	10.23	17.56	14.95	26.19	7.87	2.51	5.53	3.45
Merged-chr9-88720425-3	chr9	88720294	88720494	+	951.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128601)	promoter-TSS (NM_001128601)	-596.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	28.27	21.13	33.09	27.35	29.46	40.45	27.57	13.09	46.81	49.71	70.35	26.0
Merged-chr7-75669582-3	chr7	75669463	75669663	+	951.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-178775.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	19.79	12.83	19.97	29.76	36.0	26.03	17.27	21.14	19.08	24.1	13.57	10.65
Merged-chr13-58481357-3	chr13	58481217	58481417	+	951.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77974.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	9.29	5.53	1.71	14.08	17.18	13.17	11.96	20.52	18.69	22.09	25.12	12.22
Merged-chr5-34187181-3	chr5	34187101	34187301	+	951.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010753, intron 2 of 5)	CpG	509.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	10.9	9.06	6.85	20.51	13.5	10.98	14.95	14.05	16.13	17.07	24.12	15.66
Merged-chr15-4727091-3	chr15	4727010	4727210	+	951.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016704)	promoter-TSS (NM_016704)	-100.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	18.17	7.8	24.53	11.66	56.87	37.94	35.21	60.73	28.72	21.59	35.17	24.75
Merged-chr11-32541479-3	chr11	32541371	32541571	+	951.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	MLT1A0|LTR|ERVL-MaLR	8205.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	10.09	13.08	14.26	10.46	31.09	23.2	17.61	20.36	25.18	19.08	33.16	15.35
Merged-chr5-99978007-4	chr5	99977707	99977907	+	951.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077265, intron 1 of 8)	CpG	1131.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	2.42	5.79	3.42	9.25	8.59	7.21	4.65	9.81	5.51	9.54	3.52	8.14
Merged-chr12-54959772-3	chr12	54959677	54959877	+	951.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 3 of 26)	L1MB4|LINE|L1	26559.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	24.23	14.34	37.08	9.65	38.86	32.61	15.28	30.62	25.96	32.13	20.6	15.04
Merged-chr9-44320849-3	chr9	44320749	44320949	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-567.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	17.36	11.82	3.99	6.44	13.09	12.23	4.98	13.68	16.33	14.06	15.07	11.59
Merged-chr5-139465091-3	chr5	139464994	139465194	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4560.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	16.15	14.34	6.85	15.69	30.27	22.89	11.63	20.1	24.19	19.58	24.12	27.88
Merged-chr6-36898626-1	chr6	36898526	36898726	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 27 of 32)	intron (NM_001347104, intron 27 of 32)	-88447.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.81	1.51	1.14	0.8	4.09	1.25	10.63	7.18	0.79	6.03	3.52	4.7
Merged-chr14-27178353-1	chr14	27178253	27178453	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34360.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.23	2.77	5.13	11.66	14.73	10.98	24.25	46.32	8.06	3.01	10.55	2.82
Merged-chr13-30085199-3	chr13	30085095	30085295	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51295.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	11.71	14.59	15.97	20.91	32.32	27.28	10.63	22.65	21.44	28.62	35.17	16.29
Merged-chr3-109451635-3	chr3	109451531	109451731	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	110948.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	23.42	13.83	38.79	22.12	32.32	23.83	22.59	40.46	18.88	16.07	26.63	6.27
Merged-chr12-119164270-1	chr12	119164170	119164370	+	951.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177290, intron 12 of 13)	intron (NM_177290, intron 12 of 13)	74006.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	7.27	4.78	7.99	2.41	2.45	8.47	1.0	2.3	8.65	17.07	19.6	2.19
Merged-chr11-51263590-2	chr11	51263478	51263678	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358279)	promoter-TSS (NM_001358279)	84.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	15.34	15.34	15.4	13.67	7.36	12.86	21.59	13.85	14.16	18.58	8.54	19.11
Merged-chr8-8462005-2	chr8	8461920	8462120	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	198753.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.62	4.53	6.28	3.62	17.18	15.05	9.3	19.29	19.67	29.62	30.15	15.66
Merged-chr9-113026250-1	chr9	113026150	113026350	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	560902.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	6.06	1.76	6.28	1.61	4.09	9.41	4.65	11.97	8.46	8.54	5.02	2.51
Merged-chr1-166002326-1	chr1	166002226	166002426	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198932, intron 1 of 15)	CpG	308.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	3.63	4.28	3.99	0.8	13.09	5.96	14.28	7.07	20.65	13.05	12.56	6.89
Merged-chr15-67989791-1	chr15	67989691	67989891	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	269065.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.02	2.01	3.42	1.61	12.27	13.8	1.33	9.17	2.95	0.0	1.0	1.88
Merged-chr7-128740106-1	chr7	128740006	128740206	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	CpG	323.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	12.52	10.06	12.55	7.64	6.14	3.14	6.98	4.51	10.03	5.52	3.01	6.27
Merged-chr2-18923289-1	chr2	18923189	18923389	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	74832.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	5.25	7.04	6.85	12.87	9.41	4.08	3.99	10.15	0.39	2.51	4.02	3.45
Merged-chr19-57273422-3	chr19	57273327	57273527	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-533.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	4.44	17.36	5.7	12.47	20.05	10.98	7.64	13.07	12.98	15.57	28.64	10.02
Merged-chr17-80706597-3	chr17	80706517	80706717	+	950.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	21408.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	16.56	11.07	32.52	12.47	11.86	10.66	20.93	28.43	15.74	5.52	18.59	15.04
Merged-chr8-71487847-3	chr8	71487735	71487935	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032544)	promoter-TSS (NM_032544)	-268.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	16.15	12.58	26.24	12.47	14.73	9.72	7.97	12.25	15.14	21.59	25.63	17.86
Merged-chr2-79321844-3	chr2	79321739	79321939	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 24 of 27)	intron (NM_010576, intron 24 of 27)	66413.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	15.34	28.17	23.96	36.6	30.27	21.32	46.17	67.65	39.53	44.69	59.8	38.85
Merged-chr6-81987156-3	chr6	81987073	81987273	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-21224.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	11.31	12.32	6.85	24.13	9.82	12.54	10.3	13.07	25.57	28.62	27.64	15.35
Merged-chr3-132753112-3	chr3	132752997	132753197	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	68953.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	14.94	11.07	13.69	34.99	15.96	27.28	33.22	39.79	21.05	27.11	30.15	23.18
Merged-chr8-111990122-3	chr8	111990024	111990224	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357185, intron 2 of 8)	intron (NM_001357185, intron 2 of 8)	2178.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	18.17	9.81	11.41	10.86	19.64	10.98	3.99	12.31	19.47	23.6	21.61	21.93
Merged-chrX-13518226-3	chrX	13518118	13518318	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001284504, exon 24 of 24)	3' UTR (NM_001284504, exon 24 of 24)	50546.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	19.38	16.35	11.41	24.53	14.73	17.87	13.29	20.05	24.39	26.11	38.69	18.48
Merged-chr2-59231790-3	chr2	59231705	59231905	+	950.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	70955.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	21.8	23.39	52.48	47.06	41.73	25.09	43.18	85.91	44.25	13.05	43.72	38.53
Merged-chr19-29355695-3	chr19	29355581	29355781	+	950.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6190.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	12.52	11.82	14.26	17.29	27.82	16.62	21.59	14.86	20.26	15.06	19.09	12.53
Merged-chr6-38982282-3	chr6	38982187	38982387	+	950.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 4 of 12)	MTD|LTR|ERVL-MaLR	63301.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	10.5	12.07	22.82	18.9	15.55	19.13	8.64	26.22	14.36	16.07	27.13	22.56
Merged-chr7-34132653-3	chr7	34132547	34132747	+	950.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207212, exon 1 of 8)	exon (NM_207212, exon 1 of 8)	621.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	16.15	22.64	33.66	18.5	13.91	18.5	24.91	27.36	24.19	9.54	18.09	11.28
Merged-chr11-102156355-3	chr11	102156259	102156459	+	950.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029649)	promoter-TSS (NM_029649)	48.0	NM_029649	76547.0	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	20.19	10.56	13.69	9.25	17.18	18.5	7.31	12.45	26.75	22.09	22.11	17.86
Merged-chr19-37689657-3	chr19	37689555	37689755	+	950.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3975.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	22.61	16.6	25.67	20.51	22.5	14.74	17.61	24.17	24.39	25.11	19.09	6.27
Merged-chr1-33912766-3	chr1	33912654	33912854	+	950.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	4529.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	23.42	22.64	13.69	11.26	14.32	15.99	10.96	18.06	22.23	27.11	22.11	10.02
Merged-chr1-184590843-3	chr1	184590758	184590958	+	950.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33167.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	13.33	9.31	11.41	18.9	18.0	15.99	24.58	22.07	12.98	12.05	25.63	10.02
Merged-chr10-118810878-2	chr10	118810760	118810960	+	950.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58043.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	28.67	18.11	31.38	11.66	27.41	27.59	21.92	22.26	38.55	36.15	47.74	25.69
Merged-chr10-120883036-2	chr10	120882936	120883136	+	950.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	15935.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	12.11	12.07	8.56	11.26	19.64	42.33	16.61	15.81	4.13	6.03	6.53	2.51
Merged-chr10-14959620-1	chr10	14959520	14959720	+	950.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	199331.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	3.23	1.26	5.7	2.01	15.55	9.72	18.27	12.08	3.93	3.01	6.53	2.82
Merged-chr9-32507705-3	chr9	32507602	32507802	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33750.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	49.26	29.93	36.51	49.87	34.36	30.73	38.86	58.49	25.37	14.56	21.61	19.74
Merged-chr10-14042814-3	chr10	14042724	14042924	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	76445.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	14.13	12.32	23.96	8.04	9.0	19.44	18.27	12.62	12.19	13.56	17.59	10.34
Merged-chr3-61407104-3	chr3	61407017	61407217	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	42610.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	12.92	11.32	16.54	32.18	13.91	9.72	17.27	23.86	22.42	16.07	24.62	21.3
Merged-chr8-37062882-1	chr8	37062782	37062982	+	950.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38644.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.81	0.5	0.0	0.0	0.82	0.31	0.0	0.0	27.54	18.58	21.61	11.59
Merged-chr17-46889620-3	chr17	46889525	46889725	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-996.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	15.34	11.57	13.69	14.88	26.59	25.09	11.63	19.85	18.1	30.63	19.09	18.17
Merged-chr16-24919888-3	chr16	24919791	24919991	+	950.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-139748.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	18.98	15.09	26.24	13.27	25.36	17.56	3.32	13.43	23.6	26.11	14.57	5.95
Merged-chr18-65691605-3	chr18	65691500	65691700	+	950.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6668.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	25.44	15.85	23.39	30.97	21.68	16.93	24.25	52.6	10.03	10.04	17.59	9.71
Merged-chr6-126853243-3	chr6	126853128	126853328	+	950.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009650, exon 1 of 6)	5' UTR (NM_009650, exon 1 of 6)	130.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	12.52	10.82	10.27	14.08	15.96	11.92	19.93	19.68	15.14	10.04	13.57	16.29
Merged-chr14-26814076-3	chr14	26813966	26814166	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80538.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	16.56	12.07	38.22	19.31	6.55	8.78	13.62	19.54	31.86	10.54	42.71	16.6
Merged-chr10-78137331-3	chr10	78137226	78137426	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32442.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	65.41	60.37	55.33	13.27	51.96	90.94	28.9	27.31	95.2	72.81	69.34	41.04
Merged-chr12-105684545-3	chr12	105684447	105684647	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	694.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	14.13	19.62	7.99	12.47	18.0	18.5	22.59	18.06	23.8	16.57	17.59	15.04
Merged-chr10-123085485-3	chr10	123085379	123085579	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8974.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	18.98	10.82	27.95	27.35	21.68	12.86	33.88	31.93	11.8	3.01	24.62	10.34
Merged-chr9-32680304-3	chr9	32680198	32680398	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-15744.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	12.11	11.32	15.97	22.52	30.27	21.01	22.92	35.47	19.47	15.06	22.11	19.42
Merged-chr19-9977973-3	chr19	9977871	9978071	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2629.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	58.95	69.67	61.61	9.65	67.5	87.8	44.18	23.78	84.77	60.25	66.33	37.59
Merged-chr10-62508584-3	chr10	62508461	62508661	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-804.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	9.69	13.08	10.27	16.09	12.68	15.37	10.96	14.61	22.42	13.05	12.56	9.4
Merged-chr1-135686914-3	chr1	135686809	135687009	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33154.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	19.79	17.61	25.1	16.49	17.18	27.91	14.62	20.19	11.21	10.04	19.6	11.9
Merged-chr6-125352101-3	chr6	125351995	125352195	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	2372.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	9.69	15.85	16.54	15.28	20.05	23.2	14.95	19.63	46.22	36.15	45.73	28.82
Merged-chr2-152788973-3	chr2	152788882	152789082	+	950.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34809.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	10.9	19.62	36.51	30.97	31.09	15.37	19.6	25.6	23.8	34.65	26.63	10.34
Merged-chr4-117908423-2	chr4	117908301	117908501	+	950.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146152, intron 2 of 19)	intron (NM_146152, intron 2 of 19)	6598.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	2.83	2.77	13.69	16.49	9.41	4.08	3.99	9.2	4.92	4.52	6.03	7.52
Merged-chr18-46408193-3	chr18	46408101	46408301	+	950.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57615.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	8.08	11.32	21.68	24.13	32.73	35.75	49.16	60.53	30.29	18.58	76.88	21.93
Merged-chr11-11682789-3	chr11	11682696	11682896	+	950.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3129.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	19.79	16.1	19.4	12.07	22.91	18.5	15.28	20.86	17.11	19.08	26.13	9.4
Merged-chr9-107904904-3	chr9	107904779	107904979	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2010.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	31.5	12.32	14.26	8.85	18.41	24.15	6.31	16.65	25.37	15.57	23.62	23.49
Merged-chr11-34828004-3	chr11	34827904	34828104	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027411, intron 2 of 11)	Lx7|LINE|L1	5637.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	14.13	12.58	10.84	6.03	22.5	17.87	11.96	21.87	32.45	21.59	20.6	19.74
Merged-chr12-87470473-3	chr12	87470405	87470605	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025507, intron 1 of 13)	MTB_Mm|LTR|ERVL-MaLR	1794.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	9.69	10.56	5.13	6.03	11.86	12.86	8.97	9.7	12.19	16.57	19.09	8.14
Merged-chr5-117307856-3	chr5	117307734	117307934	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11432.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	20.19	16.6	29.09	14.08	21.27	22.58	18.6	23.41	17.7	14.56	26.13	15.66
Merged-chr17-64603348-3	chr17	64603256	64603456	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1707.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	15.34	12.07	13.69	11.26	19.23	18.5	19.93	18.59	21.24	20.59	23.11	16.29
Merged-chr4-129818917-2	chr4	129818857	129819057	+	950.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1522.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.44	5.53	5.13	6.03	12.68	7.53	11.96	13.07	13.96	4.02	5.02	12.84
Merged-chr18-6163197-3	chr18	6163108	6163308	+	950.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27110.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	14.13	4.02	21.68	20.11	19.23	5.02	14.62	20.52	15.93	10.54	30.15	10.34
Merged-chr16-20537571-4	chr16	20537546	20537746	+	950.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009679, exon 2 of 11)	5' UTR (NM_009679, exon 2 of 11)	2166.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	12.52	17.61	16.54	8.85	11.45	21.01	8.3	10.37	13.77	22.09	15.07	9.4
Merged-chr12-34433126-3	chr12	34433011	34433211	+	950.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024124, exon 4 of 12)	exon (NM_024124, exon 4 of 12)	95778.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.9	8.55	16.54	20.51	13.09	18.5	8.64	18.08	19.28	15.06	21.1	10.34
Merged-chr2-35337647-3	chr2	35337550	35337750	+	950.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-641.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	30.69	23.39	47.35	27.35	18.0	19.44	27.57	37.57	27.93	17.57	14.57	8.14
Merged-chr11-98960740-5	chr11	98960765	98960965	+	950.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001176528, exon 1 of 8)	5' UTR (NM_001176528, exon 1 of 8)	394.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.06	16.6	13.12	6.84	10.23	13.17	11.63	4.71	17.11	18.08	13.57	15.04
Merged-chr15-98992678-3	chr15	98992594	98992794	+	950.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6729.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	11.31	17.1	21.11	15.28	28.64	24.46	8.97	19.63	40.12	21.59	36.18	16.92
Merged-chr12-44355267-2	chr12	44355176	44355376	+	950.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146031, intron 1 of 27)	intron (NM_001146031, intron 1 of 27)	26391.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	29.48	11.07	37.65	45.05	68.73	27.59	78.72	90.56	2.56	0.0	0.0	0.0
Merged-chr11-69125416-3	chr11	69125321	69125521	+	950.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-956.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	15.75	13.08	10.84	13.67	15.96	17.87	5.65	12.34	19.28	26.11	10.55	18.8
Merged-chr11-117198249-3	chr11	117198150	117198350	+	950.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1411.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	21.4	14.34	8.56	3.22	12.27	19.44	8.3	13.51	32.85	15.06	20.1	9.71
Merged-chr16-55835976-3	chr16	55835893	55836093	+	950.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	2648.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.85	13.08	20.54	3.22	15.14	16.31	10.96	4.51	30.09	23.1	16.08	8.14
Merged-chr2-170327004-3	chr2	170326901	170327101	+	950.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29360.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	22.21	13.83	17.11	38.21	30.27	20.38	25.24	37.29	33.04	17.07	13.06	24.43
Merged-chr2-35330953-3	chr2	35330858	35331058	+	950.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	6051.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	18.17	16.85	17.68	4.42	15.55	29.79	12.29	15.9	24.98	29.12	12.56	10.02
Merged-chr4-132463968-3	chr4	132463874	132464074	+	950.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026039)	promoter-TSS (NM_026039)	-53.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	35.13	18.86	11.98	13.67	27.41	26.65	15.94	20.58	36.58	40.17	31.15	26.63
Merged-chr10-93079629-1	chr10	93079529	93079729	+	950.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 1 of 67)	MTD|LTR|ERVL-MaLR	1967.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	15.74	21.59	20.1	11.28
Merged-chr1-191396277-3	chr1	191396154	191396354	+	950.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144880, exon 1 of 13)	exon (NM_144880, exon 1 of 13)	787.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	16.56	15.09	17.68	12.47	10.64	8.78	9.97	11.36	24.98	17.57	20.1	11.9
Merged-chr2-143978658-3	chr2	143978564	143978764	+	950.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	32599.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	7.67	15.85	14.26	13.27	5.32	15.68	16.61	25.74	21.24	2.51	20.1	10.96
Merged-chr12-113015261-3	chr12	113015194	113015394	+	950.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	786.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	22.21	20.37	17.68	16.09	9.82	12.54	5.98	17.94	27.34	17.07	20.6	12.84
Merged-chr12-99225449-3	chr12	99225343	99225543	+	950.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-62635.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	16.56	18.86	19.97	24.13	26.59	37.32	24.91	35.27	27.54	11.55	30.15	14.1
Merged-chr6-72395093-3	chr6	72395035	72395235	+	950.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-4468.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	8.48	9.31	14.83	11.66	18.0	16.62	12.62	14.64	22.23	14.06	11.56	18.8
Merged-chr18-36691593-3	chr18	36691502	36691702	+	950.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	4323.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	12.52	13.08	17.68	7.64	18.41	18.81	13.29	18.98	22.03	18.08	18.59	18.8
Merged-chr6-135198095-3	chr6	135198056	135198256	+	950.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362111)	promoter-TSS (NM_001362111)	56.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	13.73	13.58	12.55	14.48	15.14	7.53	6.98	12.25	13.96	17.57	18.59	17.23
Merged-chr11-117087578-3	chr11	117087480	117087680	+	950.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	10232.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	21.0	21.63	28.52	23.33	14.32	10.66	6.98	13.15	23.21	23.6	13.57	14.41
Merged-chr18-68889645-2	chr18	68889543	68889743	+	950.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_038051, exon 7 of 7)	non-coding (NR_038051, exon 7 of 7)	61885.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	31.09	12.07	14.26	23.33	42.14	38.26	39.53	54.79	2.95	1.0	3.01	0.63
Merged-chr11-106759210-3	chr11	106759098	106759298	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	7972.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	23.02	10.82	21.68	19.71	25.77	34.18	14.62	20.05	35.21	41.67	32.66	24.43
Merged-chr2-168553802-1	chr2	168553702	168553902	+	950.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	36563.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.86	6.54	5.7	3.62	2.45	11.92	11.29	16.15	6.49	5.52	7.54	5.01
Merged-chr15-91703236-1	chr15	91703136	91703336	+	950.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025730, intron 11 of 50)	intron (NM_025730, intron 11 of 50)	30012.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	8.48	6.29	1.14	5.63	11.86	14.11	7.97	15.03	3.54	8.54	14.07	13.16
Merged-chr4-121004854-3	chr4	121004740	121004940	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	12407.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	30.28	26.66	24.53	16.89	10.64	15.05	1.99	6.22	28.32	16.07	11.56	6.27
Merged-chr2-84936640-3	chr2	84936562	84936762	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021398)	promoter-TSS (NM_021398)	16.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	21.0	15.59	18.25	22.52	10.64	11.29	17.94	17.58	13.57	18.58	15.58	14.41
Merged-chr8-13531141-3	chr8	13531039	13531239	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31322.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	29.07	22.64	25.1	31.77	52.37	17.25	33.88	48.36	13.77	13.05	13.06	16.6
Merged-chrX-70363648-3	chrX	70363555	70363755	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010498, intron 2 of 8)	intron (NM_010498, intron 2 of 8)	1430.0	NM_010498	15931.0	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	13.33	26.66	18.25	16.49	17.59	27.59	12.62	26.13	11.01	24.1	36.68	9.4
Merged-chr17-34306601-3	chr17	34306494	34306694	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	727.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	16.96	26.66	25.67	4.83	31.5	24.15	5.65	9.5	23.21	22.59	24.12	9.4
Merged-chr17-29496904-5	chr17	29496771	29496971	+	950.295227	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	5826.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.08	20.12	11.41	4.42	3.27	10.03	1.33	0.34	10.23	12.55	7.54	3.76
Merged-chr18-75696967-3	chr18	75696773	75696973	+	950.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 1 of 11)	CpG	823.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	10.5	5.79	15.97	12.07	5.32	12.23	16.94	9.79	16.33	12.05	13.06	15.35
Merged-chr18-5821568-3	chr18	5821458	5821658	+	950.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	228911.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	10.09	13.08	19.97	18.9	8.18	19.13	16.28	15.87	37.96	26.61	41.71	14.1
Merged-chr15-8451232-3	chr15	8451138	8451338	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6775.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	14.13	19.62	15.97	16.89	18.0	24.15	7.97	14.78	26.75	26.61	22.61	11.9
Merged-chr4-155481558-3	chr4	155481452	155481652	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9809.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	20.59	15.85	36.51	19.31	14.73	22.89	6.31	18.84	33.44	27.62	25.12	13.47
Merged-chr8-69089958-3	chr8	69089863	69090063	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-741.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	12.52	11.07	5.13	18.9	14.32	24.77	7.64	15.31	25.77	21.59	21.1	19.74
Merged-chr17-70968343-3	chr17	70968227	70968427	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22189.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	9.29	16.6	12.55	10.86	13.09	23.2	17.27	18.25	14.95	24.1	18.09	13.78
Merged-chr15-82341288-3	chr15	82341092	82341292	+	950.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	13.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	12.52	19.87	15.97	7.64	11.45	16.93	13.95	12.0	16.52	28.12	13.57	9.4
Merged-chrX-50620094-2	chrX	50620004	50620204	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015505, intron 3 of 19)	intron (NR_015505, intron 3 of 19)	15217.0	NR_015505	103012.0	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	4.85	6.54	10.27	7.64	7.36	17.25	13.62	10.99	20.06	23.6	3.52	5.01
Merged-chr12-85959602-2	chr12	85959491	85959691	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	119450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.81	1.76	5.13	3.22	6.14	16.31	9.97	12.25	23.01	7.53	22.61	3.13
Merged-chr16-17928097-4	chr16	17927846	17928046	+	950.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153150, intron 1 of 8)	CpG-5572	273.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	8.08	10.31	16.54	16.89	12.27	9.41	2.33	5.78	11.21	13.56	14.57	10.02
Merged-chr4-129823446-2	chr4	129823349	129823549	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2741.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.67	2.77	12.55	2.01	19.23	6.9	8.3	17.52	13.57	18.58	2.51	2.51
Merged-chr2-122763202-2	chr2	122763122	122763322	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2137.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.25	10.82	6.28	7.24	7.77	9.72	10.96	11.83	47.4	45.19	48.74	21.62
Merged-chr17-81579919-3	chr17	81579816	81580016	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	158471.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	18.57	6.29	7.42	18.9	12.27	11.92	9.63	26.05	15.34	13.05	17.08	5.64
Merged-chr16-52091078-3	chr16	52090980	52091180	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	59531.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	13.33	8.55	14.26	17.29	12.27	15.68	21.59	19.6	25.37	19.08	24.12	20.05
Merged-chr11-106821175-3	chr11	106821065	106821265	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	31913.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	24.63	10.82	16.54	9.65	36.41	24.46	13.95	19.93	26.16	16.07	20.6	18.17
Merged-chr5-123136621-3	chr5	123136532	123136732	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4003.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	14.54	10.31	12.55	15.28	13.5	23.2	15.61	12.34	20.46	11.55	22.61	16.92
Merged-chr5-105732657-3	chr5	105732569	105732769	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	31859.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	20.59	11.32	13.12	19.71	18.0	18.81	18.6	15.9	18.29	11.05	23.11	12.22
Merged-chr9-63712820-2	chr9	63712722	63712922	+	950.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	45172.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.65	5.53	8.56	10.05	8.59	11.6	13.29	13.07	15.74	15.57	18.09	18.48
Merged-chr17-56757578-3	chr17	56757492	56757692	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-44.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	19.38	11.82	11.98	15.28	29.05	26.97	17.61	26.38	26.36	22.59	34.67	21.3
Merged-chr6-134863388-3	chr6	134863292	134863492	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24393.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	21.4	23.64	21.11	10.86	21.27	12.23	11.63	15.56	44.84	28.12	34.17	23.81
Merged-chr15-100150741-3	chr15	100150642	100150842	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3654.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	23.02	22.64	31.95	14.08	18.82	17.25	8.64	21.48	23.6	7.03	22.11	13.47
Merged-chr1-191119097-3	chr1	191118978	191119178	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	33.92	36.47	32.52	24.94	30.27	35.75	10.3	18.87	15.34	15.06	31.66	7.83
Merged-chr5-36750587-3	chr5	36750476	36750676	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1897.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	11.71	31.19	10.84	27.35	23.32	21.32	11.63	15.59	33.24	58.24	41.2	30.7
Merged-chr14-64876792-3	chr14	64876691	64876891	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	73066.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	9.29	19.62	12.55	18.1	18.82	18.81	10.96	9.84	12.78	9.04	12.06	6.89
Merged-chr12-82326663-3	chr12	82326563	82326763	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	15314.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	19.79	15.59	22.82	18.5	18.82	26.97	5.98	20.94	20.06	17.57	16.08	17.54
Merged-chr7-30878161-3	chr7	30878071	30878271	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001043317, intron 3 of 15)	PB1D7|SINE|Alu	857.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	12.52	16.6	19.4	9.65	20.86	13.8	7.97	17.36	31.08	23.1	25.12	16.92
Merged-chr4-36289340-2	chr4	36289263	36289463	+	950.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	356090.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	5.25	2.01	5.7	6.03	14.32	18.19	19.27	18.0	11.41	15.57	21.1	11.28
Merged-chr2-31446230-3	chr2	31446114	31446314	+	950.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24056.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	31.5	32.7	49.63	11.66	18.0	30.1	11.29	10.35	33.83	21.59	35.17	16.29
Merged-chr9-45095319-2	chr9	45095220	45095420	+	950.116699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16137.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	15.34	19.12	18.25	19.31	24.55	25.09	6.98	17.66	10.82	3.51	4.52	2.82
Merged-chr9-3022181-3	chr9	3022084	3022284	+	950.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	16559.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	24.23	12.83	17.68	15.28	29.86	12.54	20.26	40.82	39.34	49.21	31.15	36.97
Merged-chr5-62765891-3	chr5	62765785	62765985	+	950.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	CpG	292.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	10.5	11.82	23.39	14.48	18.0	11.29	18.93	9.79	18.88	16.57	21.1	10.96
Merged-chr3-83947680-3	chr3	83947579	83947779	+	950.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 7 of 34)	intron (NM_172681, intron 7 of 34)	92482.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	21.8	14.34	22.82	34.99	15.55	13.8	20.93	21.28	17.31	9.54	25.63	10.96
Merged-chr8-105269779-3	chr8	105269688	105269888	+	950.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256044)	promoter-TSS (NM_001256044)	-13.0	NM_011939	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	20.59	21.88	25.67	29.36	27.82	26.03	12.62	31.74	28.72	14.06	16.08	10.65
Merged-chr2-32083756-3	chr2	32083659	32083859	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	-54.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	13.33	13.33	23.39	19.31	7.77	10.98	13.29	18.17	20.85	23.1	17.59	18.48
Merged-chr18-5142680-3	chr18	5142590	5142790	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23041.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	24.63	16.1	15.97	17.29	43.36	33.24	29.56	43.43	30.88	36.65	36.68	9.71
Merged-chr12-100053385-3	chr12	100053290	100053490	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-58941.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	32.71	12.07	30.23	28.96	46.23	45.78	40.52	45.87	23.6	49.21	42.71	26.31
Merged-chr18-73502115-3	chr18	73502011	73502211	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-70594.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	11.31	19.62	23.96	29.76	41.73	33.24	42.19	44.8	30.88	24.1	55.78	25.37
Merged-chr2-128428267-3	chr2	128428150	128428350	+	950.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	1101.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	11.31	14.59	14.26	7.64	8.59	31.98	4.98	9.76	18.29	21.09	25.12	9.4
Merged-chr7-126475312-6	chr7	126475196	126475396	+	950.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289541)	promoter-TSS (NM_001289541)	-166.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	6.06	14.09	12.55	5.63	9.0	12.54	8.3	5.58	9.64	10.54	10.55	4.07
Merged-chr3-87488103-3	chr3	87487997	87488197	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-37481.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	14.54	12.32	14.26	9.65	19.23	14.11	16.61	14.38	25.37	29.12	41.2	22.87
Merged-chr1-160882203-2	chr1	160882106	160882306	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24205.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	28.67	29.93	33.09	44.24	18.0	10.03	18.93	25.37	1.97	1.0	4.02	1.57
Merged-chr12-102158836-1	chr12	102158736	102158936	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	30109.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.82	0.0	6.98	2.47	0.0	0.0	2.01	0.31
Merged-chr4-36094345-1	chr4	36094245	36094445	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-249141.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	2.01	3.99	4.02	12.68	5.02	12.95	20.58	4.52	10.54	1.51	6.27
Merged-chr2-142766253-1	chr2	142766153	142766353	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	135211.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.44	8.3	5.7	4.42	5.73	2.82	5.98	10.51	6.1	4.02	3.01	1.88
Merged-chr1-153918690-3	chr1	153918594	153918794	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18765.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	11.31	15.34	21.11	13.67	12.68	12.86	9.3	13.54	19.67	19.58	20.1	14.41
Merged-chr6-112759090-3	chr6	112758982	112759182	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 11 of 21)	intron (NM_080448, intron 11 of 21)	-62412.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	19.79	16.85	22.82	26.95	16.36	15.99	12.29	19.12	16.13	11.05	16.08	15.35
Merged-chr5-24604946-3	chr5	24604828	24605028	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2926.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	8.88	13.33	3.99	17.7	22.09	16.93	27.24	17.47	12.78	10.04	16.08	12.84
Merged-chr11-3170172-2	chr11	3170081	3170281	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23282.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	12.52	17.1	17.68	9.65	18.0	25.09	14.28	11.1	0.0	1.0	2.01	0.63
Merged-chr13-46521726-1	chr13	46521626	46521826	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026056, intron 1 of 12)	L1MA5|LINE|L1	19823.0	NM_026056	67252.0	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	6.46	1.76	5.7	5.23	10.64	3.45	5.65	9.28	1.97	0.0	3.01	1.25
Merged-chr2-132109615-3	chr2	132109511	132109711	+	949.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	35497.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	2.42	13.08	14.26	14.88	9.82	11.6	7.64	17.16	14.75	7.53	7.03	7.52
Merged-chr13-37890354-3	chr13	37890248	37890448	+	949.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	1477.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	18.98	17.86	21.11	32.58	19.64	27.28	30.23	39.28	12.59	15.06	23.11	14.1
Merged-chr3-10025973-3	chr3	10025873	10026073	+	949.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13388.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	16.15	6.29	22.25	19.71	15.96	8.15	8.64	19.32	32.26	21.59	34.17	13.16
Merged-chr2-160157292-3	chr2	160157167	160157367	+	949.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140614.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	23.42	12.07	24.53	33.38	37.23	35.75	39.86	30.28	24.19	20.08	12.56	14.41
Merged-chr2-167300229-4	chr2	167300192	167300392	+	949.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	48886.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.04	1.26	6.85	2.41	8.18	11.6	10.63	20.69	10.82	2.51	10.05	8.46
Merged-chr10-4394151-2	chr10	4394002	4394202	+	949.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-5994.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	14.94	9.56	24.53	7.64	27.41	6.9	13.29	28.37	6.1	5.02	6.03	3.76
Merged-chr7-24460001-2	chr7	24459908	24460108	+	949.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2475.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.81	3.52	3.42	3.22	16.77	21.64	14.28	17.5	13.18	12.55	37.69	12.53
Merged-chr1-170897151-3	chr1	170897062	170897262	+	949.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11622.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	27.86	20.63	33.09	9.25	32.32	32.61	17.94	32.8	43.27	42.18	46.73	31.64
Merged-chr10-93946094-2	chr10	93946010	93946210	+	949.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17753.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	5.25	1.26	1.14	2.41	2.45	9.09	9.3	21.59	94.02	80.84	92.46	45.74
Merged-chr3-36318799-3	chr3	36318693	36318893	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-96518.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	16.96	12.07	15.4	14.08	13.5	14.74	10.3	18.73	36.58	32.13	26.63	24.43
Merged-chr10-56912896-1	chr10	56912796	56912996	+	949.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	480915.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	6.46	6.04	5.7	6.84	11.05	15.05	14.28	27.9	7.08	4.52	14.07	6.58
Merged-chr4-43010338-3	chr4	43010145	43010345	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163233)	promoter-TSS (NM_001163233)	56.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	5.65	13.33	4.56	10.05	14.73	11.6	7.31	9.25	12.19	7.03	15.58	4.7
Merged-chr2-19578819-1	chr2	19578719	19578919	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-24909.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	14.54	10.56	19.4	19.31	0.0	0.94	1.99	0.9	9.83	1.51	3.01	4.7
Merged-chr7-16895231-3	chr7	16895124	16895324	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010320, intron 3 of 3)	CpG	3438.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	19.79	9.06	9.13	12.87	15.96	22.58	12.62	19.43	27.93	22.59	17.59	17.54
Merged-chr17-80727643-3	chr17	80727594	80727794	+	949.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	CpG	331.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	10.5	11.32	14.26	9.65	12.27	8.47	11.29	15.31	15.34	23.1	18.09	10.34
Merged-chr17-29362149-3	chr17	29362041	29362241	+	949.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1227.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	16.15	14.59	3.99	13.27	14.32	11.92	9.97	13.54	24.78	17.07	14.07	19.42
Merged-chr3-133094507-3	chr3	133094397	133094597	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2458.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	10.5	14.59	7.99	15.69	33.96	38.26	14.95	36.76	20.85	18.08	28.14	13.47
Merged-chr14-64627348-3	chr14	64627243	64627443	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-25188.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	25.04	30.94	20.54	22.52	32.32	38.88	23.58	33.2	14.75	3.01	11.56	8.77
Merged-chr8-90833170-3	chr8	90833079	90833279	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	4344.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.86	9.06	6.85	16.09	19.23	8.47	15.94	16.79	13.37	14.06	22.11	17.54
Merged-chr14-25530564-3	chr14	25530469	25530669	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-3870.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	45.63	38.23	42.78	60.33	67.09	50.17	27.9	66.14	24.39	13.56	45.22	23.18
Merged-chr4-125131516-5	chr4	125131451	125131651	+	949.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3670.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	11.31	8.3	3.42	8.45	19.64	11.6	18.6	14.41	12.59	21.09	16.58	16.6
Merged-chr2-113449482-3	chr2	113449374	113449574	+	949.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	8410.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	17.36	9.31	15.97	14.08	22.09	22.58	24.58	32.13	23.21	24.1	42.71	17.54
Merged-chr1-64621463-3	chr1	64621344	64621544	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4276.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	16.15	15.09	26.24	22.93	9.82	18.19	12.29	18.79	19.08	12.55	19.09	11.28
Merged-chr5-148400333-3	chr5	148400246	148400446	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-442.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	14.94	11.57	15.4	16.09	7.77	10.35	10.96	10.82	19.08	10.54	20.6	23.49
Merged-chr3-127793310-3	chr3	127793207	127793407	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2650.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	12.92	14.09	6.85	15.69	11.45	14.42	15.61	10.96	35.21	31.13	29.14	32.27
Merged-chr15-67173307-3	chr15	67173216	67173416	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	MER44A|DNA|TcMar-Tigger	3566.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	21.0	13.83	15.97	8.45	16.36	21.64	10.96	9.53	20.46	7.53	17.08	10.96
Merged-chr10-54076451-5	chr10	54076370	54076570	+	949.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	548.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	8.08	13.33	6.85	10.05	10.23	14.11	15.61	20.92	18.69	19.58	23.62	7.83
Merged-chr19-58202829-3	chr19	58202730	58202930	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93374.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	20.19	12.07	16.54	16.49	18.41	12.86	6.64	13.07	34.03	17.07	17.08	10.65
Merged-chr17-26237189-3	chr17	26237105	26237305	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	7037.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	17.36	14.59	18.25	15.69	19.64	17.56	7.97	28.46	23.41	18.08	17.08	18.8
Merged-chr6-128201555-2	chr6	128201459	128201659	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17756.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	12.11	13.58	20.54	19.71	14.73	21.32	8.3	15.87	6.29	6.53	8.04	9.08
Merged-chr9-86478585-3	chr9	86478484	86478684	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 1 of 38)	L2|LINE|L2	11430.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	16.56	14.84	17.68	36.2	11.45	8.47	10.3	28.74	17.9	17.57	19.6	22.56
Merged-chr11-105466961-3	chr11	105466862	105467062	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10227.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	16.96	15.09	7.99	23.33	10.64	10.35	6.98	12.87	13.37	11.05	8.04	11.59
Merged-chr15-78753763-1	chr15	78753663	78753863	+	949.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	19682.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	2.42	3.52	2.28	4.42	2.45	5.33	13.95	5.1	2.56	3.51	2.51	0.31
Merged-chr2-163744849-1	chr2	163744749	163744949	+	949.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	5390.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.21	2.77	2.28	3.22	1.64	2.51	2.33	0.7	1.18	2.51	1.51	1.88
Merged-chr8-76897161-2	chr8	76897069	76897269	+	949.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	3452.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	3.63	5.28	3.42	2.41	10.64	15.05	4.65	18.95	18.29	6.53	9.04	10.96
Merged-chr2-117378465-3	chr2	117378378	117378578	+	949.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35601.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	14.94	12.07	11.41	23.73	18.82	15.05	10.96	11.5	18.29	8.54	17.08	15.66
Merged-chr3-153968775-2	chr3	153968683	153968883	+	949.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4653.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	4.44	3.27	11.41	7.64	11.45	18.81	5.31	7.91	22.82	8.03	18.59	11.59
Merged-chr6-116123031-3	chr6	116122914	116123114	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	70360.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	25.84	21.38	12.55	23.73	18.82	26.97	12.95	27.95	22.23	23.1	41.2	10.65
Merged-chr8-108847195-3	chr8	108847047	108847247	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89713.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	14.54	8.05	15.4	13.67	18.41	10.03	17.61	17.92	12.78	12.55	19.09	9.4
Merged-chr12-73659939-3	chr12	73659826	73660026	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75130.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	11.31	8.05	13.69	20.11	32.73	17.87	16.61	27.28	15.93	13.56	35.68	20.68
Merged-chr19-45749506-3	chr19	45749390	45749590	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008723)	promoter-TSS (NM_008723)	73.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	13.33	13.83	13.12	10.86	24.55	19.44	16.94	9.31	10.03	23.1	12.06	15.04
Merged-chr3-105862020-4	chr3	105861907	105862107	+	949.6041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8851.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	16.15	9.31	10.84	12.07	18.41	21.01	17.61	15.48	9.24	9.54	13.06	11.59
Merged-chr3-81107024-2	chr3	81106905	81107105	+	949.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	70589.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	8.08	1.76	4.56	5.23	11.86	14.42	12.62	31.12	13.96	15.06	25.12	5.64
Merged-chr2-152789683-3	chr2	152789615	152789815	+	949.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35542.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	15.34	8.3	11.41	9.65	14.32	10.98	5.65	16.79	24.39	17.07	12.56	14.1
Merged-chr1-14577117-3	chr1	14577023	14577223	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178843.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	15.34	16.1	17.68	19.31	17.18	17.56	13.95	16.6	16.13	19.08	21.61	10.34
Merged-chr19-5568371-3	chr19	5568205	5568405	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033448, exon 1 of 2)	5' UTR (NM_001033448, exon 1 of 2)	281.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	14.54	11.07	11.98	15.28	19.23	13.8	6.31	13.91	17.51	11.05	11.56	10.96
Merged-chr10-80151898-3	chr10	80151792	80151992	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2210.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	18.57	16.6	13.69	12.87	17.18	18.5	9.63	14.5	24.98	14.56	11.05	9.4
Merged-chr15-99723316-3	chr15	99723210	99723410	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	1164.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	15.34	9.31	6.28	17.7	12.68	7.84	7.31	11.83	17.7	17.07	31.15	13.47
Merged-chr10-93083448-3	chr10	93083354	93083554	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1858.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	12.11	8.55	17.68	13.67	31.09	33.24	18.6	21.17	40.71	24.6	49.75	27.25
Merged-chr2-52872829-3	chr2	52872724	52872924	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	14956.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.86	13.58	16.54	12.47	24.96	24.77	41.19	36.14	20.85	21.59	21.61	16.6
Merged-chr6-113680218-3	chr6	113680132	113680332	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16818.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	24.63	11.57	32.52	47.46	23.73	32.3	55.8	101.36	23.21	12.55	38.69	15.35
Merged-chr18-54853232-3	chr18	54853135	54853335	+	949.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136945.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	17.77	10.56	29.66	38.61	33.14	20.7	27.57	34.74	17.51	19.58	38.69	19.42
Merged-chr2-117390313-3	chr2	117390142	117390342	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47365.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	28.67	20.63	17.11	4.02	37.64	41.39	14.28	15.11	52.12	68.79	51.25	17.23
Merged-chr10-44634903-3	chr10	44634787	44634987	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176139.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	27.46	10.06	13.69	27.75	41.73	31.98	22.92	46.23	25.57	22.59	41.2	17.54
Merged-chr3-148990056-1	chr3	148989956	148990156	+	949.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-35421.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.04	8.55	1.14	6.44	5.32	14.11	5.98	7.99	6.29	4.52	5.02	4.07
Merged-chr8-8704972-3	chr8	8704885	8705085	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-14448.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	25.04	10.06	33.66	13.27	19.23	17.87	27.9	30.14	36.58	28.12	38.69	20.05
Merged-chr4-141065310-3	chr4	141065216	141065416	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4771.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	9.69	17.1	11.41	13.67	17.18	22.26	5.65	12.5	27.54	23.6	31.66	21.3
Merged-chr6-5256260-3	chr6	5256130	5256330	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	3.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	15.75	15.34	13.69	37.81	38.86	21.64	17.61	37.26	12.98	20.08	35.68	8.14
Merged-chr9-96393956-2	chr9	96393812	96394012	+	949.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-29481.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.83	4.02	1.14	4.02	7.36	1.88	5.65	9.03	14.36	13.05	12.06	14.41
Merged-chr6-97452414-3	chr6	97452287	97452487	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	6899.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	18.98	11.07	18.83	15.28	30.27	40.45	22.92	26.52	26.75	17.07	16.58	13.78
Merged-chr17-45686975-3	chr17	45686895	45687095	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	646.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	44.42	26.66	13.12	8.04	25.77	36.06	18.93	12.95	24.19	24.6	16.58	13.78
Merged-chr3-79852939-3	chr3	79852837	79853037	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-10275.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	25.04	19.87	41.64	23.73	35.59	23.83	31.22	52.23	16.52	7.53	16.58	19.11
Merged-chr2-30966982-3	chr2	30966906	30967106	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	912.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	31.09	19.12	11.41	11.66	36.41	34.49	18.93	21.14	37.37	35.65	37.69	17.86
Merged-chr7-31158754-3	chr7	31158674	31158874	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-3584.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	17.77	22.13	33.66	16.89	33.14	56.13	35.87	19.77	24.98	24.6	18.59	10.34
Merged-chr4-129060124-3	chr4	129060032	129060232	+	949.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	1861.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	14.94	12.58	21.11	9.65	12.27	21.95	6.64	15.5	33.44	18.08	20.6	6.89
Merged-chr2-155133509-3	chr2	155133399	155133599	+	949.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008395)	promoter-TSS (NM_008395)	18.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	23.02	14.34	7.99	10.05	16.77	34.81	12.62	23.13	21.83	23.6	36.18	18.8
Merged-chr11-62280790-3	chr11	62280671	62280871	+	949.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	624.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	18.57	26.41	10.27	10.05	29.86	33.55	14.62	17.38	32.45	31.63	26.63	15.98
Merged-chr14-17878613-3	chr14	17878518	17878718	+	949.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-103026.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	16.56	7.04	35.94	23.33	12.68	21.32	13.29	22.37	26.75	13.56	30.65	12.22
Merged-chr11-83541155-3	chr11	83541041	83541241	+	949.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10623.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	28.27	21.88	24.53	10.05	44.59	67.42	23.58	25.79	73.36	61.76	38.69	24.12
Merged-chr5-43180624-3	chr5	43180515	43180715	+	949.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-52848.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.86	12.58	20.54	19.31	26.18	20.7	17.94	30.95	26.75	23.1	25.63	12.84
Merged-chr17-71143442-3	chr17	71143315	71143515	+	949.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-40117.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	12.92	10.56	11.41	14.08	19.23	16.62	25.91	34.21	23.6	23.1	31.15	15.04
Merged-chr10-121591237-3	chr10	121591143	121591343	+	949.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 24 of 24)	MTD|LTR|ERVL-MaLR	-4449.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	11.31	15.09	18.25	13.27	28.64	33.24	32.22	42.59	88.9	104.44	112.05	71.11
Merged-chr12-52624861-3	chr12	52624756	52624956	+	949.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	16.56	9.56	10.84	22.52	15.14	11.29	7.97	15.11	38.16	25.61	34.67	29.76
Merged-chr5-149221615-3	chr5	149221519	149221719	+	949.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37059.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	14.94	25.15	14.26	21.32	9.41	13.17	14.62	23.38	38.35	18.58	63.82	22.87
Merged-chr3-122638850-3	chr3	122638748	122638948	+	949.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19134.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	17.36	11.07	14.26	10.46	16.77	19.13	11.29	23.38	16.13	23.1	23.11	13.16
Merged-chr11-62494937-3	chr11	62494847	62495047	+	949.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36487.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	14.94	3.52	14.83	26.55	16.36	10.03	30.56	41.16	16.92	8.03	44.22	24.43
Merged-chr11-102408040-2	chr11	102407947	102408147	+	949.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-530.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	8.48	6.54	3.42	6.44	8.59	17.25	7.97	9.14	17.31	13.56	17.08	15.35
Merged-chr18-56562437-3	chr18	56562310	56562510	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138600)	promoter-TSS (NM_138600)	-112.0	NM_138600	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	12.52	8.55	14.26	14.08	21.68	21.01	24.58	25.82	21.44	28.62	19.09	13.16
Merged-chrX-73782394-3	chrX	73782293	73782493	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008323, intron 2 of 12)	intron (NM_008323, intron 2 of 12)	4504.0	NM_008323	15929.0	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	10.9	14.59	17.11	18.9	18.0	22.89	18.93	24.79	27.14	25.61	28.14	19.74
Merged-chr18-57029852-1	chr18	57029752	57029952	+	949.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54473.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.0	3.02	2.28	2.01	12.68	25.09	4.98	12.39	4.92	0.0	1.51	1.25
Merged-chr15-58133911-3	chr15	58133813	58134013	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	1169.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	12.52	13.33	9.7	19.71	15.96	16.62	11.29	18.53	24.19	18.08	27.13	17.23
Merged-chr2-128338718-3	chr2	128338621	128338821	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	90630.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	25.44	9.56	19.4	12.87	43.77	22.26	17.61	29.89	38.75	38.66	23.62	36.97
Merged-chr9-86573143-3	chr9	86573033	86573233	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027100, intron 2 of 2)	B3|SINE|B2	1080.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	10.5	14.59	5.7	15.28	15.55	24.15	12.95	20.36	25.18	34.65	29.14	15.66
Merged-chr6-40576008-3	chr6	40575924	40576124	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	4636.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	6.06	10.06	27.95	14.48	9.0	13.17	23.58	20.61	12.19	11.05	16.08	5.95
Merged-chr15-88743558-3	chr15	88743460	88743660	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-8151.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	23.42	16.1	12.55	16.89	18.82	18.81	19.27	17.72	17.31	17.07	24.12	24.75
Merged-chr19-46306149-3	chr19	46306101	46306301	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152247)	promoter-TSS (NR_152247)	271.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	11.71	6.54	5.7	10.86	11.05	26.34	8.64	10.35	15.93	25.11	31.66	9.71
Merged-chr5-21218088-3	chr5	21217975	21218175	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 6 of 26)	Tigger17a|DNA|TcMar-Tigger	31808.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	11.71	14.34	10.27	12.87	18.82	15.68	17.94	14.92	17.11	15.57	20.6	10.34
Merged-chr17-6948530-3	chr17	6948409	6948609	+	949.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083945)	promoter-TSS (NM_001083945)	-153.0	NM_001083945	100037282.0	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	2.42	4.78	2.28	6.84	8.59	11.6	10.63	6.2	14.95	30.63	21.1	18.8
Merged-chr3-36614448-1	chr3	36614348	36614548	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1059.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	17.77	14.84	21.68	4.42	3.27	0.0	0.0	0.17	2.75	2.51	0.0	0.63
Merged-chr3-94786516-3	chr3	94786412	94786612	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037711)	promoter-TSS (NM_001037711)	3.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	23.82	10.06	13.12	9.25	22.5	17.87	21.59	21.45	17.51	30.63	30.15	18.8
Merged-chr9-96705760-3	chr9	96705665	96705865	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13680.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	28.27	10.06	22.82	18.9	27.0	27.28	21.59	47.16	18.49	14.56	32.16	14.1
Merged-chr2-31068983-3	chr2	31068885	31069085	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	27515.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	12.11	11.32	15.97	8.85	22.5	25.09	15.61	18.14	17.51	28.12	25.63	12.53
Merged-chr14-104523687-3	chr14	104523579	104523779	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1013.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	15.75	10.56	15.4	16.09	18.0	16.62	10.3	19.32	26.55	24.1	29.14	10.02
Merged-chr1-46894603-3	chr1	46894502	46894702	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	31174.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	10.5	16.1	20.54	11.66	17.18	14.42	18.27	25.49	26.75	16.07	33.16	11.28
Merged-chr4-130917765-3	chr4	130917670	130917870	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	4436.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	17.36	9.31	27.38	15.69	20.86	18.19	13.62	15.08	18.1	13.56	14.57	9.71
Merged-chr12-84389105-3	chr12	84389017	84389217	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	11817.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	12.92	14.59	6.85	4.42	21.68	18.5	17.94	12.11	15.93	16.57	10.55	9.4
Merged-chr11-103354232-3	chr11	103354129	103354329	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	9463.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	16.15	6.54	11.41	21.72	10.64	7.84	12.95	13.82	10.62	2.51	19.6	14.41
Merged-chr5-121249855-3	chr5	121249745	121249945	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29626.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	18.17	9.31	31.95	24.94	14.32	12.86	19.93	23.07	24.0	20.08	39.19	25.06
Merged-chr8-107269792-3	chr8	107269690	107269890	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	13626.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	18.57	11.32	24.53	19.71	47.05	33.87	23.25	36.76	42.68	31.13	40.2	27.88
Merged-chr19-10869742-3	chr19	10869600	10869800	+	949.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133804)	promoter-TSS (NM_133804)	79.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	13.73	11.32	10.27	26.55	18.82	14.42	11.96	15.36	13.18	19.58	15.58	14.72
Merged-chr5-32940884-3	chr5	32940785	32940985	+	949.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025426, intron 28 of 42)	intron (NM_001025426, intron 28 of 42)	77164.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	16.15	14.34	20.54	19.71	13.5	12.23	4.65	18.45	21.44	12.05	16.08	12.53
Merged-chr4-3692986-2	chr4	3692897	3693097	+	949.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	ORR1G|LTR|ERVL-MaLR	14876.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	4.85	1.76	6.85	5.23	13.09	10.03	3.65	10.51	26.55	20.08	22.11	15.35
Merged-chr7-101029576-3	chr7	101029471	101029671	+	949.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17518.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	27.05	24.4	18.83	19.31	34.77	35.43	19.6	28.49	16.13	16.07	16.58	12.53
Merged-chr15-99088453-3	chr15	99088352	99088552	+	949.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024702)	promoter-TSS (NM_001024702)	-724.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	21.8	22.13	24.53	10.46	33.55	19.13	5.65	18.39	30.49	24.6	31.15	18.8
Merged-chr5-24878054-3	chr5	24877947	24878147	+	949.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 8 of 15)	intron (NM_145401, intron 8 of 15)	-24522.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	22.61	20.37	34.8	45.45	19.64	7.84	21.26	30.59	12.78	8.03	24.12	12.22
Merged-chr9-21136108-3	chr9	21135997	21136197	+	949.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4822.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	71.88	67.41	47.35	14.88	60.14	98.46	20.93	17.02	95.2	69.79	64.82	23.81
Merged-chr4-40971732-6	chr4	40971615	40971815	+	949.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290448, intron 1 of 15)	intron (NM_001290448, intron 1 of 15)	772.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	6.46	9.56	3.42	3.22	4.5	10.35	3.32	7.96	12.19	8.03	10.05	9.71
Merged-chr18-81572201-3	chr18	81572089	81572289	+	949.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	419891.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	23.02	11.57	26.24	14.08	15.14	16.31	14.28	20.83	15.74	13.05	28.64	15.35
Merged-chr16-44243444-2	chr16	44243346	44243546	+	949.18335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	70049.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.65	3.77	2.85	6.44	24.14	14.42	6.64	18.5	21.83	23.6	21.61	10.02
Merged-chr2-60176223-3	chr2	60176056	60176256	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33780.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	11.71	18.86	15.4	14.48	9.82	17.56	4.32	19.29	15.54	8.03	11.05	10.34
Merged-chr4-66857185-3	chr4	66857085	66857285	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29634.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	12.11	14.59	14.83	10.05	46.23	52.68	28.23	36.22	26.16	29.12	17.59	13.16
Merged-chr8-56550737-3	chr8	56550654	56550854	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015791)	promoter-TSS (NM_015791)	-188.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	12.92	15.59	11.98	21.32	14.32	16.93	23.92	18.95	24.39	20.59	17.08	20.36
Merged-chr17-33992037-3	chr17	33991997	33992197	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	8236.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	32.3	36.97	12.55	12.07	15.14	18.5	11.29	6.06	18.69	10.54	8.54	8.46
Merged-chr3-79120543-3	chr3	79120438	79120638	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24349.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	35.13	32.95	30.8	18.9	14.32	71.18	17.94	7.23	48.98	45.69	38.69	7.52
Merged-chr1-80454190-3	chr1	80454095	80454295	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	8263.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	10.5	11.07	14.83	28.15	25.77	22.26	21.92	41.27	31.08	27.11	36.18	26.0
Merged-chr19-53264009-2	chr19	53263908	53264108	+	949.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8803.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	9.69	3.77	10.27	6.84	14.73	12.54	10.3	8.55	16.92	8.54	18.59	6.58
Merged-chr5-135187709-2	chr5	135187648	135187848	+	949.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011714, exon 1 of 19)	exon (NM_011714, exon 1 of 19)	425.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	3.63	10.56	11.98	16.49	12.68	9.72	12.95	11.02	19.28	22.59	14.07	17.86
Merged-chr14-30713923-3	chr14	30713837	30714037	+	949.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019460)	promoter-TSS (NM_019460)	-912.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	13.33	32.95	13.12	4.83	16.77	31.67	6.64	11.97	25.77	32.64	7.03	5.64
Merged-chr15-89427370-3	chr15	89427270	89427470	+	949.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_004843, exon 8 of 27)	non-coding (NR_004843, exon 8 of 27)	-1508.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	15.34	17.36	10.84	20.51	16.77	21.64	10.63	19.01	26.16	26.61	27.64	14.72
Merged-chr17-35868398-3	chr17	35868300	35868500	+	949.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1785.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	15.75	19.62	19.97	8.45	19.23	24.77	14.95	13.79	37.96	28.12	22.61	8.46
Merged-chr10-97313787-3	chr10	97313681	97313881	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109697.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	12.11	10.31	14.26	19.71	13.91	16.31	21.26	13.77	16.13	25.61	24.62	13.47
Merged-chr7-30588386-3	chr7	30588266	30588466	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290573, exon 1 of 37)	exon (NM_001290573, exon 1 of 37)	360.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	11.71	11.32	13.12	10.46	11.05	8.15	10.3	10.79	10.23	20.08	13.57	20.05
Merged-chr4-141722182-3	chr4	141722080	141722280	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	1239.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	11.71	11.32	15.4	16.49	12.27	18.5	14.28	12.93	15.93	13.56	25.12	11.59
Merged-chrX-140598803-3	chrX	140598728	140598928	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 1 of 3)	CpG	1694.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	12.92	13.33	7.99	10.05	11.05	6.27	7.64	10.71	14.95	6.03	20.6	10.65
Merged-chr10-41923625-4	chr10	41923523	41923723	+	949.107178	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 15 of 17)	B1_Mus2|SINE|Alu	36184.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	9.69	13.58	6.28	27.35	14.32	21.01	17.27	6.25	20.65	24.1	30.15	15.04
Merged-chr14-64834013-4	chr14	64833857	64834057	+	949.1041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115900.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.44	3.77	2.28	4.02	4.09	6.59	8.97	5.3	4.13	10.54	6.53	6.89
Merged-chr8-83739423-3	chr8	83739382	83739582	+	949.0793460000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1829.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	11.31	8.05	9.7	25.74	9.41	8.15	10.63	9.76	17.11	20.59	31.15	10.02
Merged-chr9-123941560-3	chr9	123941470	123941670	+	949.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27122.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	18.57	8.55	31.95	53.09	24.14	22.58	25.24	44.58	20.65	16.07	17.59	20.99
Merged-chr11-95849957-3	chr11	95849849	95850049	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	6704.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	15.75	15.34	11.98	18.1	34.36	19.76	15.94	28.63	37.57	22.09	30.15	18.48
Merged-chr11-72795676-3	chr11	72795585	72795785	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	154.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	14.94	13.58	5.13	18.9	12.27	17.56	21.92	17.44	14.55	13.56	17.08	14.1
Merged-chr11-115564317-3	chr11	115564248	115564448	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-96.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	22.61	15.34	9.7	19.31	18.0	11.92	12.95	9.87	14.16	17.07	12.06	12.84
Merged-chr5-101864168-3	chr5	101864084	101864284	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 50 of 66)	intron (NM_172882, intron 50 of 66)	99054.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	8.88	19.37	20.54	27.75	16.77	25.09	14.28	27.2	21.05	23.1	46.23	15.98
Merged-chr4-10968042-3	chr4	10967919	10968119	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39600.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	21.0	15.59	19.97	22.93	28.23	19.76	17.61	26.22	23.41	9.54	27.64	12.22
Merged-chr2-29053123-3	chr2	29053012	29053212	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1954.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	25.84	15.34	13.12	27.75	22.09	18.81	18.93	8.78	28.13	15.06	28.64	9.4
Merged-chr2-160211906-3	chr2	160211808	160212008	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115586.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	13.73	9.56	14.26	12.47	14.32	16.93	18.6	38.36	14.36	8.03	33.16	18.48
Merged-chr9-109923996-3	chr9	109923914	109924114	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7760.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	12.11	12.07	9.13	14.08	15.96	17.25	10.63	12.5	26.75	23.6	33.67	18.17
Merged-chr17-45627010-3	chr17	45626918	45627118	+	949.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24916.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	11.71	12.83	15.97	14.88	15.14	24.46	6.98	12.14	25.77	22.09	34.67	9.71
Merged-chr7-116231406-1	chr7	116231306	116231506	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	6370.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	5.65	8.05	7.99	4.02	18.0	14.11	10.3	10.01	3.34	7.03	7.54	4.39
Merged-chr14-120387526-1	chr14	120387426	120387626	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 4 of 8)	intron (NM_001360376, intron 4 of 8)	81074.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.02	0.5	3.99	3.22	3.68	8.15	14.62	28.51	1.38	2.01	6.53	3.76
Merged-chr4-88544054-3	chr4	88543961	88544161	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14184.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	20.59	22.89	15.4	25.34	24.14	27.59	12.29	28.35	33.63	49.21	45.22	18.17
Merged-chr12-104471737-3	chr12	104471601	104471801	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010351, intron 2 of 2)	intron (NM_010351, intron 2 of 2)	1535.0	NM_010351	14836.0	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	9.69	26.91	26.24	22.52	17.59	6.59	11.63	14.64	10.62	9.04	12.06	10.96
Merged-chr17-71474801-1	chr17	71474701	71474901	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028887, intron 1 of 47)	CpG	542.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	12.92	11.57	6.28	6.03	10.23	14.74	8.64	9.67	8.46	15.57	23.62	14.1
Merged-chr2-181691822-3	chr2	181691724	181691924	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291205)	promoter-TSS (NM_001291205)	-7.0	NM_001291205	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	13.73	12.83	11.98	9.65	17.18	21.64	8.64	27.9	16.13	26.11	20.6	13.47
Merged-chr14-46742926-3	chr14	46742839	46743039	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-17602.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	20.59	14.59	15.97	25.34	17.18	21.01	19.93	29.8	13.57	6.03	14.07	10.96
Merged-chr12-106683843-1	chr12	106683743	106683943	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32481.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.0	0.0	0.0	3.22	5.32	8.78	10.63	11.44	3.74	3.51	5.02	5.64
Merged-chr18-57598512-3	chr18	57598407	57598607	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	40078.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	16.56	5.79	30.8	20.91	18.82	14.11	20.59	31.68	14.36	11.55	27.64	4.07
Merged-chr19-12501072-1	chr19	12500972	12501172	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172442, exon 1 of 9)	exon (NM_172442, exon 1 of 9)	924.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	10.5	5.79	7.99	4.02	12.68	11.6	14.28	7.01	7.67	7.53	8.54	11.9
Merged-chr8-46837202-3	chr8	46837106	46837306	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	97461.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	10.9	12.07	29.09	16.49	21.27	18.81	11.96	18.0	23.8	16.57	24.62	14.1
Merged-chr1-153748599-3	chr1	153748433	153748633	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-893.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	8.48	8.05	5.7	2.01	16.77	3.45	9.97	6.64	5.51	8.54	6.53	5.33
Merged-chr1-172526885-1	chr1	172526785	172526985	+	949.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 1 of 11)	MLT1N2|LTR|ERVL-MaLR	5755.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.42	2.01	4.56	4.42	0.0	3.14	1.66	1.32	7.67	13.05	22.11	10.34
Merged-chr5-92328209-2	chr5	92328110	92328310	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008599)	promoter-TSS (NM_008599)	-131.0	NM_008599	17329.0	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	7.27	14.34	10.27	2.01	6.14	6.9	2.66	2.94	22.62	18.58	7.03	6.27
Merged-chr2-137869740-1	chr2	137869640	137869840	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-386844.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	1.62	5.28	2.28	6.03	9.41	1.88	3.32	12.14	4.33	5.52	5.02	4.39
Merged-chr7-116626236-1	chr7	116626136	116626336	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121867.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.85	2.52	5.7	2.41	4.5	17.25	6.64	8.72	2.56	6.03	8.04	1.88
Merged-chr10-111507522-1	chr10	111507422	111507622	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	1236.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	12.11	6.79	3.99	5.63	2.86	8.15	5.98	7.96	6.29	4.52	12.06	9.4
Merged-chr3-137880383-3	chr3	137880292	137880492	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	12717.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	24.23	18.61	18.83	8.45	39.68	34.18	19.93	21.34	26.36	36.65	24.12	12.22
Merged-chr1-95653689-1	chr1	95653589	95653789	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009183, exon 3 of 5)	exon (NM_009183, exon 3 of 5)	13905.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	2.42	1.51	0.0	0.0	6.95	15.99	8.97	11.55	3.93	1.0	3.52	2.19
Merged-chr11-85324086-1	chr11	85323986	85324186	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	12832.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	4.85	4.78	1.14	0.4	22.09	10.98	2.99	13.88	5.51	9.04	9.55	1.88
Merged-chr13-95944042-1	chr13	95943942	95944142	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52120.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	10.5	2.01	5.7	8.04	3.27	4.39	6.98	11.02	5.11	5.52	20.6	6.89
Merged-chr8-23149617-3	chr8	23149475	23149675	+	948.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282148)	promoter-TSS (NM_001282148)	10.0	NM_001282148	101056408.0	Mm.475778	NM_001282148		Gm15816	-	predicted gene 15816	protein-coding	4.44	5.79	6.28	5.63	6.95	5.64	11.96	7.49	5.9	6.03	2.51	6.89
Merged-chr14-47186702-3	chr14	47186596	47186796	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	2717.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	22.61	11.07	21.68	8.45	32.32	41.08	16.94	37.88	24.39	21.59	24.12	17.54
Merged-chr13-41819677-3	chr13	41819576	41819776	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	27812.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	18.57	16.35	14.83	30.57	29.46	9.09	19.6	21.0	19.28	14.06	20.1	13.47
Merged-chr4-32161034-3	chr4	32160922	32161122	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	196915.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	16.15	7.04	31.95	32.58	29.86	42.33	52.82	54.42	30.88	27.11	55.78	44.8
Merged-chr14-52141862-3	chr14	52141768	52141968	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30965.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	16.15	16.85	7.99	13.27	10.64	15.05	8.64	17.97	11.41	8.03	16.58	20.36
Merged-chr9-113664634-3	chr9	113664537	113664737	+	948.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164678, intron 12 of 17)	intron (NM_001164678, intron 12 of 17)	43622.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	17.36	7.8	38.79	26.95	28.23	15.37	21.59	47.55	21.44	13.05	34.17	13.47
Merged-chr10-63424645-3	chr10	63424535	63424735	+	948.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5463.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	22.61	26.16	9.13	16.09	24.14	20.7	11.29	18.2	23.6	19.58	35.68	21.62
Merged-chr3-109030812-2	chr3	109030717	109030917	+	948.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3210.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	1.62	1.51	0.57	3.22	13.09	9.72	15.94	24.93	13.37	6.53	19.6	14.41
Merged-chr11-3963807-5	chr11	3963653	3963853	+	948.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022889)	promoter-TSS (NM_022889)	-222.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	18.57	12.83	15.4	8.45	11.45	8.15	4.98	8.3	17.51	16.57	26.63	17.86
Merged-chr4-102801684-3	chr4	102801572	102801772	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	L1MB8|LINE|L1	41537.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	15.75	13.58	20.54	17.29	20.05	9.72	8.3	13.77	17.7	12.55	26.13	8.77
Merged-chr6-82969552-3	chr6	82969462	82969662	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 3 of 9)	L1MCa|LINE|L1	22640.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	17.77	14.34	5.13	4.42	17.18	43.27	12.95	13.04	21.64	16.07	14.57	6.27
Merged-chr1-164074833-3	chr1	164074748	164074948	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	12772.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	12.52	16.35	11.98	14.08	16.36	16.93	11.63	18.79	29.9	20.59	35.17	17.86
Merged-chr8-107294414-3	chr8	107294299	107294499	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286260, intron 1 of 12)	CpG	929.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	23.42	16.6	6.28	15.69	9.41	14.42	14.95	11.83	14.16	9.54	18.59	17.23
Merged-chr18-38542734-3	chr18	38542637	38542837	+	948.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58531.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	17.36	27.17	15.4	10.46	28.64	76.2	23.25	12.06	24.59	40.67	25.12	1.25
Merged-chr5-150674371-3	chr5	150674208	150674408	+	948.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175310, intron 1 of 34)	CpG	481.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	21.0	15.85	14.26	16.49	18.0	11.92	10.63	15.06	11.41	8.54	12.06	8.77
Merged-chr1-87112071-2	chr1	87111926	87112126	+	948.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10420.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	2.83	5.28	0.0	2.82	15.55	7.53	8.64	15.25	5.31	10.04	12.06	5.95
Merged-chr1-53818307-3	chr1	53818266	53818466	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	(GA)n|Simple_repeat|Simple_repeat	-31058.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	12.92	14.34	7.99	12.47	13.5	15.68	15.94	8.05	15.34	12.55	18.59	9.08
Merged-chr17-17896189-3	chr17	17896103	17896303	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8379.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	18.17	13.58	13.69	17.7	12.27	13.17	9.63	17.83	34.22	30.13	38.19	25.69
Merged-chr10-81405676-3	chr10	81405573	81405773	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3902.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	12.11	3.52	6.28	14.08	20.46	15.68	14.62	16.51	20.65	15.06	35.68	11.28
Merged-chr3-20509391-2	chr3	20509285	20509485	+	948.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142208.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	4.85	2.77	1.71	8.85	4.91	13.17	9.3	12.0	15.14	15.06	25.63	4.7
Merged-chr7-106759004-3	chr7	106758902	106759102	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5616.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	16.96	9.06	17.11	21.32	26.59	24.77	19.6	20.94	32.06	20.59	21.1	18.17
Merged-chr6-83034087-3	chr6	83033951	83034151	+	948.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-173.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	18.17	7.29	18.83	10.46	7.77	10.66	8.3	10.79	10.62	9.04	17.08	12.84
Merged-chr6-83323774-3	chr6	83323670	83323870	+	948.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2269.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	16.56	11.82	31.38	9.65	11.86	18.19	11.63	20.16	29.9	19.58	15.58	18.17
Merged-chr17-84110191-2	chr17	84110092	84110292	+	948.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31532.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	7.27	4.78	9.13	14.88	27.41	11.92	12.62	29.1	22.82	18.58	13.06	6.58
Merged-chr7-110385671-2	chr7	110385557	110385757	+	948.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	163954.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.04	3.52	9.13	12.87	11.45	11.6	11.63	18.53	18.49	9.54	19.6	5.95
Merged-chr10-40099475-3	chr10	40099313	40099513	+	948.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	L1MC1|LINE|L1	42841.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	8.88	11.82	6.85	2.82	16.36	33.87	12.95	6.31	22.82	22.59	15.07	5.01
Merged-chr5-32133184-3	chr5	32133064	32133264	+	948.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3308.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	25.04	6.79	19.4	11.26	33.14	17.56	17.94	23.1	26.95	33.64	29.65	23.81
Merged-chr1-131364591-3	chr1	131364488	131364688	+	948.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-85025.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	18.17	23.39	20.54	4.83	13.91	24.15	15.94	7.23	17.7	20.08	5.53	5.01
Merged-chr11-43767105-3	chr11	43767010	43767210	+	948.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19137.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	11.31	26.91	14.83	24.13	17.59	23.52	20.59	13.85	14.16	11.05	21.1	15.04
Merged-chr12-79321083-3	chr12	79320991	79321191	+	948.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 5 of 10)	B4A|SINE|B4	23740.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	13.33	13.08	10.84	10.86	11.45	21.95	10.63	15.42	19.28	13.56	22.61	16.29
Merged-chr15-31613917-3	chr15	31613802	31614002	+	948.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11786.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	18.57	15.09	17.68	14.48	16.77	11.6	14.62	15.81	15.14	16.07	24.12	10.02
Merged-chr2-132029201-3	chr2	132029088	132029288	+	948.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	CpG	800.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	18.57	12.32	8.56	23.33	15.96	12.86	10.63	16.49	9.24	10.54	23.11	17.54
Merged-chr11-116077647-3	chr11	116077579	116077779	+	948.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347642)	TTS (NM_001347642)	282.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	27.86	17.61	12.55	11.26	15.96	23.83	5.65	13.37	24.59	12.05	33.16	13.78
Merged-chr13-20120844-3	chr13	20120727	20120927	+	948.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	30320.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	21.4	20.88	24.53	8.04	11.45	20.7	13.95	14.89	22.23	23.1	16.58	17.86
Merged-chr4-84362535-1	chr4	84362435	84362635	+	948.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	312551.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	2.83	3.02	4.56	4.42	4.91	11.92	9.63	19.46	7.47	6.03	11.56	3.76
Merged-chr14-30405974-3	chr14	30405876	30406076	+	948.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-52060.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	14.13	12.83	29.66	15.28	15.96	16.31	18.6	19.4	46.81	21.09	37.69	10.65
Merged-chr11-73160315-3	chr11	73160204	73160404	+	948.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033321)	promoter-TSS (NM_033321)	-226.0	NM_033321	94045.0	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	17.77	20.88	20.54	12.87	13.91	18.5	19.27	11.64	30.09	17.57	18.09	12.84
Merged-chr10-125272179-2	chr10	125272085	125272285	+	948.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	36631.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	9.29	6.54	9.13	7.64	11.05	11.6	11.63	13.85	18.49	14.56	8.04	6.89
Merged-chr2-102532304-2	chr2	102532219	102532419	+	948.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17702.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	16.96	11.82	16.54	25.34	0.82	0.0	1.33	3.39	36.78	23.1	45.22	25.69
Merged-chr2-132289364-3	chr2	132289274	132289474	+	948.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291039, intron 1 of 12)	RLTR17|LTR|ERVK	3435.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	14.54	10.56	16.54	9.65	10.23	15.99	9.3	9.64	19.47	16.07	20.6	25.69
Merged-chr5-77460484-3	chr5	77460364	77460564	+	948.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5024.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	27.46	14.34	10.27	27.75	20.46	28.22	25.91	37.43	15.14	15.06	24.62	14.41
Merged-chr7-68157628-3	chr7	68157526	68157726	+	948.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	106607.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	9.29	17.1	28.52	19.31	11.86	12.86	5.31	16.46	21.05	13.56	27.13	12.22
Merged-chr11-29809539-3	chr11	29809440	29809640	+	948.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	16128.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	10.9	8.55	17.68	19.71	14.32	26.97	30.23	43.91	35.6	16.57	46.23	19.74
Merged-chr6-125096891-3	chr6	125096827	125097027	+	948.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106012)	promoter-TSS (NR_106012)	-97.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	46.03	66.91	12.55	15.28	18.0	50.8	18.93	7.77	46.22	95.9	16.58	16.92
Merged-chr12-37255577-3	chr12	37255458	37255658	+	948.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	13919.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	11.71	12.58	8.56	10.05	29.46	13.8	8.97	24.06	22.62	24.1	36.18	15.98
Merged-chr10-122052055-3	chr10	122051977	122052177	+	948.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4762.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	27.05	9.31	25.1	18.1	29.46	32.3	12.95	25.01	25.57	40.17	23.11	12.22
Merged-chr1-36279385-3	chr1	36279329	36279529	+	948.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6004.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	19.38	14.84	9.13	7.64	13.91	16.31	10.96	13.99	24.39	15.57	11.56	15.66
Merged-chr2-127341296-3	chr2	127341193	127341393	+	948.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291003)	promoter-TSS (NM_001291003)	-343.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	11.71	12.07	14.26	3.22	12.27	20.07	3.32	2.8	24.0	15.57	7.54	2.82
Merged-chr9-118608909-3	chr9	118608807	118609007	+	948.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2198.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.86	10.31	30.8	24.94	22.91	28.54	31.89	39.79	24.98	15.06	39.7	21.3
Merged-chr4-43249364-3	chr4	43249279	43249479	+	948.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 24 of 39)	intron (NM_001081413, intron 24 of 39)	-17780.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	49.26	45.53	54.76	54.7	49.09	54.88	41.52	48.93	19.08	12.55	19.6	12.22
Merged-chr11-21569357-5	chr11	21569297	21569497	+	948.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	2537.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	7.27	10.56	18.25	17.29	18.82	12.54	9.3	10.07	16.52	10.04	15.58	20.36
Merged-chr19-4257198-3	chr19	4257080	4257280	+	948.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6698.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	8.88	17.36	19.4	12.87	14.32	19.13	10.63	13.37	19.87	17.57	18.09	17.86
Merged-chr9-75547041-2	chr9	75546931	75547131	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12626.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	5.65	13.33	15.97	9.65	8.59	10.98	4.65	14.47	21.64	12.55	12.56	15.98
Merged-chr2-166041902-3	chr2	166041809	166042009	+	948.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	49272.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	20.19	15.09	21.68	12.47	16.77	21.64	9.97	26.44	27.14	27.62	30.15	13.47
Merged-chr1-35975846-1	chr1	35975746	35975946	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-92554.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.83	2.77	6.28	3.22	11.45	4.39	5.65	9.06	6.1	3.01	6.03	9.4
Merged-chr17-79955055-3	chr17	79954931	79955131	+	948.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58908.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	12.92	10.82	20.54	14.48	6.55	8.15	22.92	14.1	5.11	8.54	25.63	11.28
Merged-chr11-118275239-2	chr11	118275120	118275320	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	15024.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	3.63	8.05	3.42	7.24	27.0	28.85	13.29	22.65	20.46	15.06	14.07	22.56
Merged-chr13-112331428-1	chr13	112331328	112331528	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	42910.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	2.02	2.01	4.56	3.22	4.5	7.53	19.93	27.67	1.57	6.03	2.51	3.45
Merged-chr17-28513968-3	chr17	28513879	28514079	+	948.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16882.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	15.75	5.79	14.26	12.47	22.5	12.86	17.27	15.0	15.54	7.53	19.6	18.48
Merged-chr10-118622297-3	chr10	118622198	118622398	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-65773.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	8.88	10.31	18.25	16.49	24.55	19.13	19.93	30.14	33.83	16.57	44.22	25.06
Merged-chr2-122777038-3	chr2	122776951	122777151	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-4948.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	12.52	13.33	17.68	27.75	20.46	20.7	31.22	42.76	19.47	26.11	39.7	20.99
Merged-chr7-102426500-3	chr7	102426417	102426617	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 8 of 11)	intron (NM_009287, intron 8 of 11)	-15178.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	22.21	9.56	10.27	22.12	26.18	13.48	19.6	28.32	17.7	17.07	39.7	16.6
Merged-chr8-117338838-3	chr8	117338719	117338919	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-10351.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.88	16.35	21.11	23.33	27.41	18.81	37.2	44.19	29.9	26.61	36.68	26.31
Merged-chr12-69455785-3	chr12	69455687	69455887	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19763.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	15.34	11.07	16.54	28.96	20.05	15.05	13.29	20.78	10.62	10.54	20.6	14.1
Merged-chr2-127398262-3	chr2	127398162	127398362	+	948.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26937.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	17.77	11.07	16.54	9.25	18.41	7.53	13.29	11.69	22.42	17.57	16.58	23.49
Merged-chr14-121894670-3	chr14	121894568	121894768	+	948.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15260.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	16.96	10.06	10.27	24.94	18.0	17.25	12.95	22.96	37.76	28.62	20.1	16.6
Merged-chr10-67629084-3	chr10	67628970	67629170	+	948.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57111.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	14.13	12.07	15.97	18.1	20.46	15.99	21.92	30.98	19.67	20.08	11.05	20.05
Merged-chrX-167175576-3	chrX	167175482	167175682	+	948.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33636.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	11.31	12.83	17.11	16.09	16.36	17.25	22.92	18.84	15.34	12.05	18.09	16.92
Merged-chr2-167377905-3	chr2	167377798	167377998	+	948.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28720.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	18.57	14.09	21.68	12.07	27.0	18.5	20.26	26.5	30.88	17.57	38.69	22.56
Merged-chr15-96640871-3	chr15	96640775	96640975	+	948.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1087.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	28.67	17.61	9.13	20.91	21.68	41.08	21.26	18.79	30.68	20.08	22.61	11.9
Merged-chr11-75268717-2	chr11	75268625	75268825	+	948.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177708)	TTS (NM_177708)	74732.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	2.42	9.31	9.13	10.05	9.82	25.09	7.31	25.35	15.74	12.05	19.6	13.16
Merged-chr12-3291182-3	chr12	3291094	3291294	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	18775.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	27.86	18.86	17.11	9.65	21.27	31.36	17.61	18.53	21.44	36.65	40.7	11.9
Merged-chr7-101360651-3	chr7	101360568	101360768	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	12599.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	16.56	10.06	18.25	6.84	13.09	22.89	10.3	9.2	17.51	11.05	26.63	16.92
Merged-chr3-97994250-3	chr3	97994135	97994335	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19303.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	12.92	8.8	9.7	2.82	22.5	26.65	21.26	24.11	17.7	24.1	13.06	13.78
Merged-chr6-38949210-3	chr6	38949120	38949320	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	30234.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	14.54	18.61	15.4	14.48	11.45	24.77	8.97	18.17	20.26	26.11	14.07	11.9
Merged-chr18-56708374-3	chr18	56708262	56708462	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010721, exon 1 of 11)	exon (NM_010721, exon 1 of 11)	549.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	12.52	18.11	15.4	14.88	14.32	9.09	16.28	8.83	10.23	18.08	24.12	12.53
Merged-chr1-177981512-3	chr1	177981409	177981609	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-9889.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	8.88	13.33	15.97	14.88	18.41	15.05	17.61	25.96	29.31	16.57	31.15	24.75
Merged-chr8-72317270-3	chr8	72317162	72317362	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1800.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	11.71	10.06	6.85	11.66	37.64	37.63	46.17	36.03	29.5	30.13	24.12	18.48
Merged-chr10-6753581-3	chr10	6753471	6753671	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-5022.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	9.69	12.32	18.25	16.89	17.59	26.34	16.61	30.25	20.65	11.55	17.08	7.21
Merged-chr9-99563876-3	chr9	99563786	99563986	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 1 of 21)	intron (NM_028768, intron 1 of 21)	5013.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	12.92	6.04	33.09	21.72	25.77	25.71	25.91	39.93	49.57	39.67	57.79	29.76
Merged-chr14-73445275-1	chr14	73445175	73445375	+	948.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59986.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.44	11.32	9.13	12.47	2.86	10.98	14.62	7.93	11.21	8.03	8.54	10.65
Merged-chr15-31615613-3	chr15	31615493	31615693	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	13477.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	8.08	10.31	13.12	4.83	27.0	20.07	22.26	23.72	22.82	17.57	36.18	10.02
Merged-chr19-37370610-3	chr19	37370509	37370709	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-5794.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	8.88	10.82	18.25	13.27	14.32	20.7	11.96	15.93	32.45	14.56	16.58	12.53
Merged-chr10-80826998-3	chr10	80826912	80827112	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301034, intron 1 of 4)	CpG	316.0	NR_027656	100041965.0	Mm.328806	NR_027656		Oaz1-ps	Gm1823|Gm9786|Oaz-ps	ornithine decarboxylase antizyme 1, pseudogene	pseudo	45.63	45.28	14.26	16.89	31.09	37.63	24.58	20.33	48.39	38.16	38.19	18.8
Merged-chr1-172148619-3	chr1	172148518	172148718	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357204, intron 1 of 13)	intron (NM_001357204, intron 1 of 13)	603.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	21.4	15.34	10.27	7.64	12.68	19.13	18.27	11.44	23.01	16.07	16.08	15.66
Merged-chr7-127270486-3	chr7	127270410	127270610	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3549.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	15.75	8.8	20.54	7.24	42.96	43.27	34.55	40.37	48.39	37.16	39.7	26.94
Merged-chr9-102792098-1	chr9	102791998	102792198	+	948.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42822.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	7.67	5.53	1.14	4.83	9.82	6.27	5.31	11.64	6.1	3.51	5.53	2.19
Merged-chr16-91549841-3	chr16	91549716	91549916	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	2722.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	27.46	24.65	18.25	13.27	31.91	44.53	12.62	28.71	38.55	28.62	40.7	25.37
Merged-chr3-104794132-3	chr3	104794027	104794227	+	948.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008619)	TTS (NM_008619)	5093.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	12.92	19.12	17.68	7.64	29.86	45.78	31.89	23.89	26.16	32.64	26.63	10.65
Merged-chr9-64105466-3	chr9	64105360	64105560	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	16.15	16.6	15.4	16.89	19.23	17.87	14.62	15.73	15.34	16.07	21.1	12.84
Merged-chrX-7563291-3	chrX	7563201	7563401	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290574, intron 3 of 3)	L2|LINE|L2	-10299.0	NR_029473	78185.0	Mm.160055	NR_029473	ENSMUSG00000039545	Flicr	4930524L23Rik|Ppp1r3fos	Foxp3 regulating long intergenic noncoding RNA	ncRNA	18.17	12.32	5.7	26.95	20.86	25.71	18.27	27.7	12.19	13.56	24.62	10.65
Merged-chr17-6978782-3	chr17	6978695	6978895	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026611).2	promoter-TSS (NM_026611).2	-65.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	35.94	33.45	26.24	21.72	27.82	50.8	42.85	18.56	26.16	57.24	28.64	13.47
Merged-chr16-36711460-3	chr16	36711373	36711573	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	17495.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	10.9	16.35	19.4	31.37	11.86	15.99	19.6	13.37	25.57	22.09	39.19	7.83
Merged-chr5-24384656-3	chr5	24384554	24384754	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008713)	TTS (NM_008713)	7489.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	21.4	11.07	7.42	20.11	23.73	27.59	13.29	18.5	13.57	23.1	25.63	13.47
Merged-chr3-50406123-3	chr3	50406038	50406238	+	948.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	37475.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	29.88	19.87	46.21	45.45	47.05	32.93	47.83	46.29	11.6	18.08	35.68	21.62
Merged-chr1-171504128-3	chr1	171504062	171504262	+	948.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019484, exon 1 of 1)	exon (NM_019484, exon 1 of 1)	684.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	10.9	11.32	10.27	12.07	17.18	12.86	7.31	11.13	16.92	18.08	15.07	15.04
Merged-chr4-132963670-3	chr4	132963596	132963796	+	948.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10399.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	18.57	17.36	17.11	3.22	20.46	31.98	16.28	10.43	20.26	20.08	17.59	5.95
Merged-chr19-40707712-3	chr19	40707606	40707806	+	948.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	BGLII_B2|LTR|ERVK	47936.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	16.56	8.55	27.38	10.86	28.23	11.92	19.27	12.79	18.1	14.56	18.09	9.71
Merged-chr6-94509449-3	chr6	94509336	94509536	+	948.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9122.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	55.32	48.29	57.05	45.05	55.23	65.85	53.48	69.5	29.5	18.08	27.13	10.02
Merged-chr19-45984601-3	chr19	45984505	45984705	+	948.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 1 of 25)	MTC|LTR|ERVL-MaLR	-13532.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	14.54	11.07	31.38	27.75	19.23	17.87	9.63	9.87	16.13	14.56	31.66	13.78
Merged-chr11-114683921-3	chr11	114683828	114684028	+	948.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	ORR1B2|LTR|ERVL-MaLR	8460.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	29.88	18.11	10.84	23.73	38.05	40.45	11.29	19.09	59.79	39.67	44.22	25.06
Merged-chr10-80320587-3	chr10	80320493	80320693	+	948.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-45.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	32.3	24.65	11.98	26.95	35.18	32.3	23.25	32.44	46.81	41.17	57.28	27.25
Merged-chr12-75833620-3	chr12	75833522	75833722	+	948.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	15304.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	15.75	11.82	17.11	15.69	9.82	19.76	12.62	21.62	14.36	15.57	17.08	10.34
Merged-chr1-75188116-2	chr1	75188018	75188218	+	948.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003917, intron 5 of 15)	intron (NM_001003917, intron 5 of 15)	3892.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	1.62	5.79	13.69	5.63	6.14	14.74	11.29	11.64	18.88	23.6	15.58	20.99
Merged-chr19-46478967-3	chr19	46478867	46479067	+	948.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-22681.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	13.73	14.59	30.23	18.5	34.36	32.93	24.91	38.5	23.21	29.62	21.1	6.58
Merged-chr16-35768572-3	chr16	35768471	35768671	+	948.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	785.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	18.17	13.83	13.12	7.64	24.14	35.43	9.3	12.76	23.8	38.16	20.6	10.02
Merged-chr6-149174151-3	chr6	149174045	149174245	+	948.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153963, intron 1 of 4)	intron (NR_153963, intron 1 of 4)	14567.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	16.15	7.8	26.81	19.31	19.23	15.37	13.62	21.87	10.82	15.57	25.63	15.35
Merged-chr17-36031964-3	chr17	36031846	36032046	+	948.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	755.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	14.54	30.69	19.4	12.47	40.09	52.37	25.58	11.69	47.6	40.67	31.66	14.1
Merged-chr1-144245987-2	chr1	144245918	144246118	+	948.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015811, intron 4 of 4)	intron (NM_015811, intron 4 of 4)	3086.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.23	7.04	1.71	5.63	12.27	8.78	11.63	9.06	4.13	7.03	9.55	2.82
Merged-chr10-81620438-3	chr10	81620345	81620545	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6877.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	12.52	16.35	5.13	2.82	12.68	17.87	10.96	2.89	21.24	36.65	14.07	5.33
Merged-chr3-30647853-3	chr3	30647760	30647960	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027941)	promoter-TSS (NM_027941)	-26.0	NM_001290510	68307.0	Mm.389425	NM_026668	ENSMUSG00000027703	Lrriq4	4930558O21Rik	leucine-rich repeats and IQ motif containing 4	protein-coding	21.0	11.57	15.4	5.23	27.41	20.07	13.62	20.44	27.34	26.61	33.67	18.8
Merged-chr8-76899749-3	chr8	76899627	76899827	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028579, intron 1 of 1)	CpG	894.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	7.27	3.77	7.99	8.85	19.23	18.81	21.26	18.2	14.36	12.05	32.16	14.41
Merged-chr7-100856430-3	chr7	100856334	100856534	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	6979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	20.19	11.82	12.55	14.48	20.05	21.32	9.3	19.37	24.0	14.06	27.13	8.14
Merged-chr18-74208330-3	chr18	74208222	74208422	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-504.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	16.56	14.59	16.54	3.22	27.0	9.09	18.6	20.89	23.6	19.58	26.63	10.02
Merged-chr18-53238571-3	chr18	53238469	53238669	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7093.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	17.36	9.06	26.81	12.07	31.91	22.89	30.23	44.02	18.1	17.07	29.14	16.92
Merged-chr12-52502321-3	chr12	52502228	52502428	+	948.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13749.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	18.57	13.33	22.82	19.71	23.73	12.23	7.64	29.55	24.39	20.08	18.59	14.72
Merged-chr13-55693499-2	chr13	55693405	55693605	+	948.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181278, intron 1 of 1)	CpG	381.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	13.33	10.06	5.13	4.83	12.27	18.81	7.97	14.36	17.31	33.64	30.65	13.47
Merged-chr15-34181847-3	chr15	34181744	34181944	+	948.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56182.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	16.15	22.89	17.68	16.89	15.55	19.13	8.97	16.57	22.42	9.54	16.58	14.72
Merged-chr17-40790058-3	chr17	40789960	40790160	+	948.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204071, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	4086.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	27.05	14.34	22.25	35.8	26.18	12.86	21.26	41.27	25.96	12.05	38.19	12.84
Merged-chr12-79618131-3	chr12	79618008	79618208	+	948.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	306625.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	21.0	14.09	13.69	8.45	20.05	15.99	10.96	16.29	17.51	13.05	7.54	3.13
Merged-chr9-110685792-3	chr9	110685688	110685888	+	948.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	29285.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	10.09	8.8	16.54	11.66	22.09	25.71	16.94	27.34	27.93	37.66	32.16	22.56
Merged-chr19-6306558-6	chr19	6306447	6306647	+	948.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	90.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	9.69	13.08	3.42	6.44	13.5	16.62	9.97	5.64	11.01	16.57	11.05	4.39
Merged-chr11-120510852-3	chr11	120510754	120510954	+	948.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	19017.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	11.71	13.33	17.11	13.67	17.18	19.13	9.97	13.35	22.42	15.57	23.62	14.41
Merged-chr11-93980020-3	chr11	93979923	93980123	+	948.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11502.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	27.05	33.45	45.64	35.39	27.41	13.17	6.98	9.56	20.26	15.06	25.12	7.83
Merged-chr18-80416739-3	chr18	80416636	80416836	+	948.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-52482.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	22.21	25.66	19.97	30.97	20.46	14.11	8.64	34.49	19.67	17.57	33.16	8.14
Merged-chr9-40392553-3	chr9	40392433	40392633	+	948.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-16116.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	10.9	10.31	14.26	14.48	18.0	14.74	24.91	27.73	12.78	12.05	20.6	22.56
Merged-chr19-56724600-3	chr19	56724440	56724640	+	948.007935	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	2168.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	9.69	10.06	12.55	16.49	20.86	16.62	20.26	19.51	6.69	15.06	24.62	17.54
Merged-chr1-191171043-1	chr1	191170943	191171143	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_007498, exon 4 of 4)	3' UTR (NM_007498, exon 4 of 4)	-6226.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	11.31	10.06	2.28	3.22	4.91	8.47	0.66	0.03	6.88	3.51	0.5	0.0
Merged-chr16-30512168-3	chr16	30512067	30512267	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38411.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	18.98	15.59	11.98	14.08	20.05	18.81	14.95	23.94	27.34	26.11	26.13	14.1
Merged-chr11-54998461-3	chr11	54998342	54998542	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 13 of 24)	intron (NR_138556, intron 13 of 24)	35029.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	16.15	6.04	7.99	10.86	13.5	14.11	9.97	13.57	18.69	22.59	25.63	15.04
Merged-chr3-27677177-1	chr3	27677077	27677277	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	33275.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	2.02	2.01	2.28	2.82	2.45	0.31	9.97	4.88	2.16	2.01	4.02	1.25
Merged-chr16-35768947-2	chr16	35768846	35769046	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_153550, exon 1 of 9)	exon (NM_153550, exon 1 of 9)	410.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	13.33	24.9	15.97	11.26	13.91	15.68	16.28	20.16	13.57	27.11	10.05	11.9
Merged-chr3-89200023-3	chr3	89199926	89200126	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2899.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	8.08	9.81	19.97	17.7	14.32	15.05	12.29	19.09	17.51	23.1	20.6	10.02
Merged-chr5-24454165-1	chr5	24454065	24454265	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1988.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	4.44	7.8	15.97	11.66	11.86	4.39	10.63	10.18	13.96	10.04	12.06	5.64
Merged-chr15-27724846-1	chr15	27724746	27724946	+	948.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43304.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.67	5.79	6.28	14.08	3.27	9.41	11.63	15.17	11.01	5.52	15.58	15.04
Merged-chr5-23674915-1	chr5	23674815	23675015	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359174, intron 2 of 16)	CpG	1052.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	2.83	2.01	0.57	2.41	7.36	9.41	13.29	10.29	1.38	0.5	1.51	1.88
Merged-chr8-80880577-3	chr8	80880448	80880648	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301298)	promoter-TSS (NM_001301298)	-29.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	20.19	19.37	25.1	25.74	27.0	28.22	13.95	19.32	16.72	11.05	22.11	12.53
Merged-chr18-60732594-1	chr18	60732494	60732694	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	547.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	2.83	6.04	19.4	3.22	8.18	3.76	6.31	9.56	4.92	5.52	0.0	4.7
Merged-chr11-32717040-1	chr11	32716940	32717140	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	74485.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.81	5.79	4.56	5.63	4.91	1.88	2.33	2.72	0.0	2.51	0.0	0.0
Merged-chr8-72474604-2	chr8	72474479	72474679	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359024, intron 2 of 17)	intron (NM_001359024, intron 2 of 17)	654.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	6.06	9.31	9.7	13.27	7.36	15.05	8.64	12.53	12.98	16.57	19.6	15.66
Merged-chr4-11003189-1	chr4	11003089	11003289	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	4430.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.44	2.77	20.54	13.27	0.0	1.25	0.0	1.07	5.51	9.04	4.52	7.21
Merged-chr8-121643561-4	chr8	121643432	121643632	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	8401.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	17.77	6.04	18.83	26.14	8.18	14.42	34.55	50.13	14.95	4.02	23.62	7.21
Merged-chr11-60143263-1	chr11	60143163	60143363	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037764, intron 1 of 4)	MIR3|SINE|MIR	3181.0	NM_001037764	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	2.02	2.52	1.14	9.25	4.91	8.78	2.66	9.73	4.92	1.51	4.02	5.01
Merged-chr16-38729801-3	chr16	38729703	38729903	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12456.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	21.4	15.34	23.96	14.88	20.46	16.93	14.95	16.21	20.06	18.58	16.58	14.41
Merged-chr16-22548368-3	chr16	22548282	22548482	+	947.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-16198.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	18.57	23.9	6.85	17.29	20.46	13.17	8.64	9.87	14.16	13.56	14.07	5.64
Merged-chr10-13869774-3	chr10	13869658	13869858	+	947.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-801.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	9.29	7.55	18.25	9.65	12.68	10.66	4.98	20.66	18.29	8.03	23.11	20.36
Merged-chr11-5115120-3	chr11	5115011	5115211	+	947.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080595, intron 13 of 14)	intron (NM_080595, intron 13 of 14)	14946.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	19.38	18.11	13.69	20.51	23.73	18.19	7.64	18.39	40.12	34.14	44.72	14.41
Merged-chr11-121793726-3	chr11	121793615	121793815	+	947.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-36503.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	33.11	17.86	9.7	12.47	42.55	60.52	23.58	22.93	26.55	40.67	30.65	6.58
Merged-chr9-45049890-3	chr9	45049789	45049989	+	947.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357727, intron 5 of 5)	intron (NM_001357727, intron 5 of 5)	-5292.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	62.99	39.99	35.37	42.23	39.68	38.88	31.22	45.03	21.83	10.04	23.11	25.37
Merged-chr15-76770512-3	chr15	76770494	76770694	+	947.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	Lx7|LINE|L1	-46749.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	14.94	6.79	5.7	6.44	13.5	16.93	9.97	14.52	14.36	20.08	12.56	9.4
Merged-chr7-3915601-3	chr7	3915485	3915685	+	947.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011087)	promoter-TSS (NM_011087)	-84.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	16.96	10.56	11.98	17.29	33.55	26.65	16.28	10.15	37.37	27.62	42.21	15.35
Merged-chr9-120927419-3	chr9	120927323	120927523	+	947.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	3379.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	10.5	13.58	27.38	4.42	17.59	37.32	14.95	12.25	28.32	24.6	29.65	9.71
Merged-chr6-124740454-3	chr6	124740361	124740561	+	947.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013535, intron 2 of 2)	intron (NM_013535, intron 2 of 2)	618.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	18.17	14.34	15.97	23.73	26.18	18.81	10.63	12.79	22.82	12.05	25.63	11.28
Merged-chr19-11513698-3	chr19	11513598	11513798	+	947.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4861.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	20.19	13.33	17.11	16.09	19.23	21.01	15.28	18.53	28.32	14.56	27.13	13.47
Merged-chr11-51890510-3	chr11	51890413	51890613	+	947.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-32883.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	18.98	10.56	17.68	39.82	17.59	26.97	28.23	45.28	22.82	13.05	28.64	21.93
Merged-chr13-109298300-3	chr13	109298236	109298436	+	947.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-26408.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	12.52	15.85	10.27	23.33	15.96	7.53	22.92	17.07	14.55	12.55	23.11	7.83
Merged-chr15-79524881-2	chr15	79524792	79524992	+	947.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134090, exon 3 of 5)	exon (NM_134090, exon 3 of 5)	8025.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	6.06	6.29	10.84	2.82	6.14	14.74	10.3	7.54	15.93	17.57	8.04	4.7
Merged-chr7-80203709-3	chr7	80203596	80203796	+	947.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	5255.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	27.05	16.6	40.5	26.95	20.05	21.95	24.25	42.62	26.75	12.05	30.15	17.23
Merged-chr2-27764631-2	chr2	27764543	27764743	+	947.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54060.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	15.75	5.53	13.12	14.48	7.36	12.86	14.62	12.28	13.96	23.1	17.08	15.98
Merged-chr19-42753831-2	chr19	42753710	42753910	+	947.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	-1035.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	16.96	15.34	14.83	12.87	23.73	9.41	12.95	15.93	16.52	18.58	13.57	7.83
Merged-chr7-83597042-3	chr7	83596946	83597146	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 4 of 22)	intron (NM_177695, intron 4 of 22)	12115.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	13.73	12.58	18.83	12.47	19.64	31.04	15.28	16.57	46.81	35.65	54.27	14.41
Merged-chr17-35867125-3	chr17	35867021	35867221	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175242, exon 1 of 3)	5' UTR (NM_175242, exon 1 of 3)	506.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	11.31	13.08	14.83	13.27	14.73	15.99	14.62	13.37	18.1	22.59	18.59	10.65
Merged-chr6-137405906-3	chr6	137405816	137406016	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-4805.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	12.52	13.33	23.96	14.08	18.41	13.8	17.94	22.82	24.39	14.56	22.61	11.9
Merged-chr11-33932064-3	chr11	33931966	33932166	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-30947.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	14.13	9.81	9.7	8.85	20.46	12.86	3.32	17.83	10.82	16.07	12.06	10.34
Merged-chr3-79099246-1	chr3	79099146	79099346	+	947.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099624, intron 3 of 23)	intron (NM_001099624, intron 3 of 23)	45641.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.25	0.0	4.83	2.45	7.53	5.98	3.39	2.16	2.01	2.01	1.25
Merged-chr2-43761982-3	chr2	43761868	43762068	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	13144.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	8.88	13.08	13.12	13.67	17.59	19.76	22.59	22.07	18.69	31.13	22.11	8.14
Merged-chr2-59393349-3	chr2	59393254	59393454	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-6672.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	17.36	18.36	35.37	27.75	9.82	17.87	16.28	19.4	27.73	14.56	17.08	17.54
Merged-chr10-84935740-3	chr10	84935633	84935833	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013441, intron 2 of 8)	intron (NM_001013441, intron 2 of 8)	18120.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	16.15	13.08	16.54	23.33	13.5	15.68	7.97	19.46	17.7	14.06	31.15	12.22
Merged-chr6-117462258-3	chr6	117462173	117462373	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32962.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	16.56	24.15	40.5	33.38	9.82	7.53	18.93	13.07	19.47	15.06	20.1	24.75
Merged-chr6-136965341-3	chr6	136965263	136965463	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10840.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	20.59	25.66	13.69	3.62	20.05	28.85	15.28	16.63	38.35	28.62	23.62	10.96
Merged-chr17-86166692-3	chr17	86166591	86166791	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1094.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	20.19	15.85	11.41	15.28	13.09	19.76	11.29	13.93	24.0	16.57	17.08	15.66
Merged-chr10-80597298-3	chr10	80597187	80597387	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-5593.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	5.65	7.29	15.4	17.7	15.14	17.87	19.93	28.49	37.96	13.05	26.63	20.99
Merged-chr17-8140437-3	chr17	8140354	8140554	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026611, intron 4 of 8)	intron (NM_026611, intron 4 of 8)	7334.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	14.13	12.07	17.11	12.87	29.86	41.71	23.25	17.66	10.03	15.06	17.59	5.33
Merged-chr1-91062580-3	chr1	91062477	91062677	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9133.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	31.9	21.38	28.52	18.5	17.18	37.32	13.29	11.72	34.03	22.59	31.15	8.77
Merged-chr8-106155291-3	chr8	106155208	106155408	+	947.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	4954.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	23.02	14.09	15.4	19.31	16.77	18.81	16.28	22.37	19.47	9.04	13.57	11.28
Merged-chr3-153571646-7	chr3	153571535	153571735	+	947.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	153498.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	4.04	6.79	8.56	14.08	6.55	9.72	13.29	16.74	17.7	19.58	39.19	19.74
Merged-chr5-148477753-3	chr5	148477674	148477874	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	73899.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	11.71	17.1	21.68	35.39	21.27	18.19	20.93	29.78	25.37	10.54	32.16	18.48
Merged-chr10-42273894-3	chr10	42273737	42273937	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2905.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	10.09	12.07	14.83	10.86	15.96	13.8	4.98	15.36	10.82	10.04	15.07	9.71
Merged-chr12-86887770-3	chr12	86887665	86887865	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2951.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	22.61	20.88	26.24	23.33	18.82	23.83	5.65	10.4	21.05	32.13	20.6	22.56
Merged-chr1-150377466-3	chr1	150377378	150377578	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357579, intron 9 of 13)	L1_Mus2|LINE|L1	-15360.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	10.5	9.31	16.54	4.83	13.91	17.56	15.28	11.38	16.72	26.61	23.62	13.16
Merged-chr6-72789403-6	chr6	72789291	72789491	+	947.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009332)	promoter-TSS (NM_009332)	-346.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	9.69	11.07	8.56	19.31	12.27	13.8	7.31	11.3	12.59	10.54	21.1	10.65
Merged-chr11-78159285-3	chr11	78159178	78159378	+	947.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	6272.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	12.52	12.83	15.97	16.89	15.55	27.91	7.31	9.95	41.89	23.1	20.1	15.04
Merged-chr11-65675838-3	chr11	65675745	65675945	+	947.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58987.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	15.34	15.85	15.4	19.71	15.55	15.99	7.97	25.23	18.69	3.01	8.54	11.28
Merged-chr2-159783441-1	chr2	159783341	159783541	+	947.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163900.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.23	1.01	0.0	3.62	2.86	1.88	1.0	0.67	14.16	16.57	19.09	7.83
Merged-chr8-79372816-4	chr8	79372784	79372984	+	947.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	26584.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	14.94	8.8	11.98	18.5	15.55	12.86	9.3	18.0	18.1	9.54	16.08	13.47
Merged-chr11-21091834-3	chr11	21091730	21091930	+	947.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023324, intron 1 of 6)	CpG	506.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	30.69	18.86	19.4	13.67	20.46	31.98	13.29	15.84	34.42	23.6	25.63	8.77
Merged-chr13-52726291-1	chr13	52726191	52726391	+	947.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	30914.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	8.88	0.25	8.56	3.22	14.73	1.25	9.97	8.8	3.74	1.0	1.0	0.0
Merged-chr13-92668421-2	chr13	92668316	92668516	+	947.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	57278.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	6.46	5.53	9.7	4.02	23.32	16.62	12.62	20.78	13.37	4.52	16.58	9.4
Merged-chr8-104103673-2	chr8	104103568	104103768	+	947.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	2043.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	5.25	6.54	11.41	3.22	11.45	20.07	14.62	10.09	13.96	4.52	14.57	10.02
Merged-chr12-3745921-2	chr12	3745818	3746018	+	947.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61062.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	10.9	16.6	14.26	10.05	9.0	15.68	10.3	12.08	21.83	6.53	6.03	3.76
Merged-chr15-101974675-2	chr15	101974574	101974774	+	947.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20387.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	4.04	2.26	1.14	3.62	8.18	21.64	12.29	23.13	29.9	15.06	18.09	9.71
Merged-chr11-64065383-2	chr11	64065283	64065483	+	947.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	14089.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	21.0	30.69	18.25	38.21	0.82	2.2	0.0	4.79	28.72	8.54	38.19	10.96
Merged-chr3-18339316-3	chr3	18339218	18339418	+	947.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-95980.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	12.92	10.06	27.95	28.96	21.27	21.32	23.92	39.65	24.59	24.1	26.63	20.05
Merged-chr11-98022782-3	chr11	98022627	98022827	+	947.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-100.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	8.08	16.85	14.83	8.45	13.91	18.19	13.62	10.12	13.18	11.55	15.07	10.34
Merged-chr1-105997476-3	chr1	105997384	105997584	+	947.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	7078.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	18.98	20.12	16.54	9.65	14.73	25.09	5.65	13.63	22.62	18.58	12.06	7.21
Merged-chr2-6713712-3	chr2	6713641	6713841	+	947.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	7921.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	8.88	9.56	19.97	24.53	24.14	10.66	9.3	26.86	20.65	15.06	10.05	14.1
Merged-chr4-55631319-3	chr4	55631208	55631408	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-98833.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	12.92	11.32	3.42	9.25	15.55	16.93	9.63	24.5	37.76	30.13	35.68	30.07
Merged-chr14-70029180-3	chr14	70029072	70029272	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48273.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	27.05	26.66	18.25	11.26	29.86	40.45	19.6	22.91	45.43	46.19	50.25	21.62
Merged-chr1-152511451-3	chr1	152511350	152511550	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177756)	TTS (NM_177756)	111583.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	21.8	29.93	18.83	15.28	18.82	41.71	20.26	14.97	14.16	26.11	9.55	13.47
Merged-chr6-29171208-3	chr6	29171121	29171321	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-6497.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	12.92	13.58	13.12	14.08	12.27	14.74	7.97	14.07	15.93	22.59	20.6	10.02
Merged-chr13-21172372-3	chr13	21172287	21172487	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-7544.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	21.8	28.93	12.55	16.89	13.09	30.42	7.31	10.54	20.26	19.08	21.1	14.1
Merged-chr14-33194423-3	chr14	33194336	33194536	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9370.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	23.82	11.57	12.55	20.91	12.27	16.31	18.27	19.96	16.13	13.56	15.07	11.9
Merged-chr3-138521450-3	chr3	138521347	138521547	+	947.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4744.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	10.5	22.64	16.54	20.11	20.05	19.76	22.26	25.93	30.09	39.16	34.17	25.06
Merged-chr7-31097795-3	chr7	31097686	31097886	+	947.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276269)	TTS (NM_001276269)	13211.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	16.96	9.56	4.56	20.51	13.91	9.09	10.96	16.91	29.11	27.11	31.15	14.1
Merged-chr11-61684290-3	chr11	61684210	61684410	+	947.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178618)	promoter-TSS (NM_178618)	-100.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	12.52	13.83	23.96	7.24	15.55	16.93	13.62	11.5	18.1	19.58	19.09	15.04
Merged-chr9-105759084-2	chr9	105758994	105759194	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 13 of 36)	intron (NM_001102607, intron 13 of 36)	50554.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	14.94	15.34	14.26	8.45	27.82	24.46	23.25	22.71	0.39	0.0	1.0	0.31
Merged-chr17-81599379-1	chr17	81599279	81599479	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	139008.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.65	2.77	2.85	8.04	11.45	4.08	5.31	14.92	6.49	6.03	1.51	5.95
Merged-chr15-100543884-3	chr15	100543774	100543974	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8134.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	23.82	19.62	27.38	32.18	20.86	21.95	11.96	8.13	29.7	25.61	19.09	16.6
Merged-chr4-67478712-1	chr4	67478612	67478812	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	651161.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	1.21	2.77	7.99	2.82	7.77	6.59	16.28	17.41	0.0	1.51	2.51	0.63
Merged-chr12-85362700-1	chr12	85362600	85362800	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	L1MC3|LINE|L1	12017.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.44	4.28	5.13	3.22	10.64	20.38	12.95	18.31	9.64	2.01	6.53	5.33
Merged-chr10-37137930-2	chr10	37137843	37138043	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008538, intron 1 of 1)	intron (NM_008538, intron 1 of 1)	983.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	10.5	10.56	9.7	3.22	15.55	11.6	15.28	12.87	14.95	13.05	17.08	12.22
Merged-chr5-31154321-3	chr5	31154218	31154418	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008622)	promoter-TSS (NM_008622)	-67.0	NM_008622	17527.0	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	17.77	16.35	11.41	21.32	20.46	15.99	12.95	13.57	18.69	17.57	17.59	12.53
Merged-chr8-105606745-3	chr8	105606601	105606801	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	1472.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	17.77	10.06	21.68	12.47	12.68	12.86	11.63	10.54	12.0	14.56	16.08	8.77
Merged-chr15-36334556-1	chr15	36334456	36334656	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51409.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	1.21	1.26	0.57	2.82	10.23	15.37	25.24	19.01	5.9	5.52	4.02	5.64
Merged-chr2-150844926-3	chr2	150844789	150844989	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-2319.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	21.4	9.56	21.11	25.74	22.09	5.33	15.28	34.82	14.55	10.04	11.05	15.04
Merged-chrX-167342045-3	chrX	167341941	167342141	+	947.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-11470.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	12.11	10.56	26.81	17.29	19.64	20.38	23.25	43.18	17.51	19.08	37.18	12.53
Merged-chr4-8666860-3	chr4	8666763	8666963	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23543.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	15.34	12.83	14.26	8.45	15.55	10.66	9.63	15.0	27.73	20.08	20.1	16.29
Merged-chr4-35120325-3	chr4	35120207	35120407	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-31748.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	26.25	29.18	26.81	22.93	11.86	26.34	11.63	8.52	23.41	9.04	34.67	9.71
Merged-chr5-20936022-3	chr5	20935927	20936127	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-14962.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	19.79	8.05	17.11	14.88	17.18	15.68	13.29	21.79	17.11	22.09	8.54	10.96
Merged-chr5-117159982-3	chr5	117159894	117160094	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	26406.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	37.96	29.93	58.19	34.19	22.5	47.04	19.93	59.08	23.6	12.55	21.61	15.04
Merged-chr10-57777222-3	chr10	57777110	57777310	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7713.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	18.17	12.83	5.7	26.95	24.55	26.34	21.92	29.69	36.39	25.11	14.57	15.98
Merged-chr9-116384367-3	chr9	116384259	116384459	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	195179.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	32.71	22.13	35.94	29.76	27.82	30.1	33.55	35.55	32.45	18.58	41.2	10.65
Merged-chr16-26041507-3	chr16	26041416	26041616	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	64268.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	15.34	10.56	28.52	20.51	43.77	9.72	14.62	41.58	6.49	10.04	21.1	11.59
Merged-chr10-78069276-3	chr10	78069172	78069372	+	947.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-96.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	22.21	14.59	9.13	10.46	24.96	26.97	23.58	22.23	39.93	24.1	40.7	24.43
Merged-chr13-37751701-3	chr13	37751601	37751801	+	947.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74337.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	19.38	12.83	18.83	17.7	20.46	20.38	17.94	24.73	17.31	14.06	13.06	12.53
Merged-chr3-32297437-3	chr3	32297346	32297546	+	947.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68043.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	24.63	18.11	15.4	17.7	27.82	31.36	14.95	17.86	27.54	16.07	12.56	18.17
Merged-chr2-32353324-3	chr2	32353243	32353443	+	947.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125959)	promoter-TSS (NR_125959)	-14.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	30.69	14.84	26.81	12.07	25.36	29.79	7.31	19.65	37.57	46.19	34.17	20.68
Merged-chr19-14387973-3	chr19	14387880	14388080	+	947.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47970.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	6.46	19.62	24.53	20.11	11.45	17.56	6.64	21.39	21.05	21.09	23.11	15.04
Merged-chr10-94122277-3	chr10	94122176	94122376	+	947.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25655.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	19.79	5.28	35.37	24.13	9.82	10.03	11.63	18.64	30.29	15.06	11.05	18.48
Merged-chr1-74053297-3	chr1	74053209	74053409	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289895, intron 3 of 32)	intron (NM_001289895, intron 3 of 32)	71138.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	13.73	13.83	22.82	18.9	9.82	13.48	10.63	12.45	16.92	6.03	24.62	11.59
Merged-chr11-17160454-3	chr11	17160348	17160548	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	1150.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	9.69	12.58	12.55	14.48	16.77	22.89	11.96	14.97	24.78	16.07	26.13	15.98
Merged-chr14-43918363-3	chr14	43918259	43918459	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5009.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	12.92	20.88	39.93	30.97	36.41	28.54	26.91	23.92	32.26	36.65	45.73	18.17
Merged-chr4-101657407-3	chr4	101657288	101657488	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	9605.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	22.61	19.37	25.1	20.11	14.73	15.37	17.27	23.86	19.08	17.07	29.65	20.68
Merged-chr10-43424677-1	chr10	43424577	43424777	+	947.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168289, intron 7 of 7)	B1F2|SINE|Alu	-54463.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	3.63	0.25	6.85	7.64	4.5	10.03	17.94	14.02	7.47	3.01	7.54	2.19
Merged-chr1-154093567-3	chr1	154093482	154093682	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107605.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	23.42	24.4	11.98	3.62	43.36	42.02	18.6	30.06	23.8	27.62	18.59	15.66
Merged-chr18-38929545-3	chr18	38929441	38929641	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10842.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	13.73	3.27	31.95	18.1	22.09	6.27	43.85	52.57	19.28	12.05	26.63	16.6
Merged-chr2-167348770-3	chr2	167348669	167348869	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	(CGCGG)n|Simple_repeat|Simple_repeat	409.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	12.92	11.82	6.85	6.44	13.5	13.8	11.96	11.24	18.69	18.08	16.58	14.72
Merged-chr10-80348531-3	chr10	80348434	80348634	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-86.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	24.23	20.12	30.8	9.25	21.68	37.32	17.61	22.18	24.78	25.11	51.25	15.04
Merged-chr18-9821375-1	chr18	9821275	9821475	+	947.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	113727.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.04	3.52	6.28	5.63	10.23	14.74	9.97	11.27	0.79	0.5	1.51	0.0
Merged-chr8-106585837-3	chr8	106585729	106585929	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1314.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	13.33	11.57	12.55	16.89	17.59	13.17	18.93	13.79	18.88	5.52	19.6	5.33
Merged-chr2-11331688-3	chr2	11331593	11331793	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7796.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	12.52	11.82	21.11	8.85	22.09	14.11	13.95	19.99	26.55	11.05	19.6	19.11
Merged-chr6-84020727-3	chr6	84020635	84020835	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	1349.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	16.96	15.59	12.55	17.7	16.77	14.74	21.92	21.25	17.51	14.06	23.11	7.83
Merged-chr4-6370785-3	chr4	6370678	6370878	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	5098.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	18.98	8.05	27.38	47.86	22.5	31.67	71.42	98.19	21.24	19.08	40.2	19.74
Merged-chr19-44332037-3	chr19	44331948	44332148	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-1278.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	9.29	11.32	17.11	10.46	19.64	26.03	18.27	42.11	34.03	31.13	39.7	27.57
Merged-chr10-84556368-3	chr10	84556255	84556455	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3017.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	15.75	38.99	13.69	20.91	48.27	38.26	24.91	28.15	30.49	44.69	28.14	17.86
Merged-chr5-138231658-2	chr5	138231549	138231749	+	947.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013773, intron 2 of 5)	intron (NM_001013773, intron 2 of 5)	5745.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	22.61	15.09	18.83	14.08	17.18	13.17	6.64	14.24	8.26	7.03	4.52	5.01
Merged-chr10-127062672-3	chr10	127062570	127062770	+	947.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-865.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	20.59	13.83	17.11	9.25	45.82	38.57	17.27	37.68	30.68	38.16	40.2	27.25
Merged-chr17-56290376-5	chr17	56290279	56290479	+	947.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	132.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	4.04	12.83	8.56	0.8	5.73	5.96	10.63	9.9	4.72	12.55	10.05	6.89
Merged-chr11-51856542-4	chr11	51856455	51856655	+	947.263916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 1 of 12)	CpG	926.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	11.71	13.83	13.69	16.09	13.91	11.6	22.26	10.32	12.39	14.06	15.07	12.22
Merged-chr17-35279454-2	chr17	35279360	35279560	+	947.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie4z|DNA|hAT-Charlie	16337.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	15.34	13.83	19.97	12.07	13.91	23.2	15.61	9.53	0.0	0.0	2.51	2.19
Merged-chr4-132805476-3	chr4	132805467	132805667	+	947.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-9203.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	9.29	6.29	10.84	12.87	7.36	4.08	3.99	1.49	11.01	9.04	8.54	4.07
Merged-chrUn_JH584304-46611-1	chrUn_JH584304	46511	46711	+	947.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	13078.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.16	29.12	21.61	15.66
Merged-chr16-35739752-3	chr16	35739649	35739849	+	947.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	29607.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	37.15	29.68	34.23	24.13	45.82	40.14	27.9	32.86	39.93	37.66	33.16	7.52
Merged-chr14-50898188-3	chr14	50898088	50898288	+	947.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4933.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	9.29	11.07	5.7	24.13	26.18	13.48	10.63	12.79	19.47	14.06	15.58	14.41
Merged-chr7-99976539-3	chr7	99976444	99976644	+	947.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	3914.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	28.27	15.59	27.95	28.96	25.77	24.46	18.6	27.2	17.31	14.56	17.59	11.28
Merged-chr9-119395107-1	chr9	119395007	119395207	+	947.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7071.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	6.86	3.77	1.14	2.82	7.36	6.9	5.65	2.24	27.34	21.09	29.65	11.9
Merged-chr11-120729703-3	chr11	120729606	120729806	+	947.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007621, exon 8 of 8)	3' UTR (NM_007621, exon 8 of 8)	2315.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	18.98	15.85	11.98	18.9	21.27	24.77	14.95	8.05	15.74	18.58	25.63	6.27
Merged-chr14-67933701-2	chr14	67933605	67933805	+	947.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-133.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	10.5	18.61	22.82	18.9	20.46	14.74	14.28	13.35	12.78	14.56	10.55	7.52
Merged-chr1-152779240-2	chr1	152779157	152779357	+	947.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12715.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	10.5	4.02	7.99	6.03	11.45	21.95	4.32	9.53	16.33	18.08	22.11	10.02
Merged-chr3-27291143-2	chr3	27291058	27291258	+	947.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25919.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.5	1.14	0.0	15.14	27.59	9.63	8.19	46.03	32.64	34.17	15.04
Merged-chr12-35192246-3	chr12	35192104	35192304	+	947.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2693.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	7.27	9.81	18.83	19.31	20.05	13.17	12.95	28.65	17.31	13.56	16.08	10.02
Merged-chr14-20885685-3	chr14	20885603	20885803	+	947.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43695.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	11.31	12.58	8.56	10.05	6.55	16.31	12.62	17.94	20.46	6.53	17.08	13.47
Merged-chr4-129623955-3	chr4	129623870	129624070	+	947.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-62.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	18.98	12.07	23.96	16.89	17.59	10.66	11.96	15.81	14.16	10.54	25.63	12.53
Merged-chr11-97412274-3	chr11	97412203	97412403	+	947.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37857.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	9.29	11.07	17.68	12.47	16.36	20.07	10.63	25.46	18.1	7.03	14.07	6.58
Merged-chr17-25678156-3	chr17	25678144	25678344	+	947.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38928.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	10.9	9.81	4.56	8.45	11.05	8.78	13.62	4.04	11.6	10.54	10.05	10.96
Merged-chr13-92844784-3	chr13	92844639	92844839	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162945)	promoter-TSS (NM_001162945)	-48.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	10.09	12.07	9.13	8.45	20.05	26.03	13.29	18.5	22.62	15.57	33.16	22.56
Merged-chr15-73726132-3	chr15	73726013	73726213	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1183.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	14.54	10.56	8.56	13.27	14.73	8.47	10.3	11.89	12.59	11.05	20.1	8.14
Merged-chr2-45104405-3	chr2	45104329	45104529	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	5848.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	10.9	9.81	12.55	0.8	20.86	21.95	10.63	11.3	14.75	15.57	22.11	7.21
Merged-chr9-58627395-3	chr9	58627287	58627487	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357751, intron 3 of 8)	intron (NM_001357751, intron 3 of 8)	45147.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	17.36	18.86	11.41	23.33	16.77	12.23	13.62	26.97	27.54	19.58	21.1	19.42
Merged-chr18-60932496-3	chr18	60932431	60932631	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	6899.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	12.92	9.81	7.99	22.52	5.32	7.84	8.3	19.32	5.51	2.01	13.57	8.77
Merged-chr2-80065357-3	chr2	80065231	80065431	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	RMER19C|LTR|ERVK	-26429.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	13.73	5.28	14.26	30.57	20.86	20.38	46.84	50.97	22.82	15.57	31.15	21.62
Merged-chr11-74638576-3	chr11	74638484	74638684	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10911.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	21.0	21.38	18.25	26.55	26.18	26.03	21.59	32.16	24.19	14.56	37.18	18.48
Merged-chr17-71834497-2	chr17	71834396	71834596	+	947.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52549.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	13.33	8.8	13.69	21.32	16.77	14.11	13.29	23.86	0.0	0.0	0.0	0.0
Merged-chr11-69245878-3	chr11	69245801	69246001	+	947.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8879.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	34.32	28.42	21.11	19.71	18.82	18.81	5.98	15.06	15.34	13.05	23.11	9.71
Merged-chr4-130810317-3	chr4	130810216	130810416	+	947.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	17779.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	20.19	10.82	26.24	22.52	15.55	25.09	12.62	31.74	25.57	13.56	39.19	25.06
Merged-chr11-117326415-3	chr11	117326307	117326507	+	947.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5308.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	14.13	15.09	25.67	12.47	14.32	20.07	7.97	9.5	30.68	23.1	14.57	20.99
Merged-chr4-32248509-3	chr4	32248408	32248608	+	947.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168927.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	27.46	22.13	12.55	18.9	34.36	27.59	28.23	26.3	29.9	23.6	32.66	14.72
Merged-chr12-70010535-3	chr12	70010410	70010610	+	947.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081453)	TTS (NM_001081453)	-23508.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	10.09	11.57	11.98	12.87	17.18	11.6	11.96	24.7	25.96	20.08	28.14	14.72
Merged-chr2-60809021-1	chr2	60808921	60809121	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	72417.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.65	1.01	2.28	2.01	16.77	6.59	14.28	20.83	4.13	4.02	1.0	1.88
Merged-chr11-68973438-3	chr11	68973348	68973548	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028048)	TTS (NM_028048)	407.0	NM_021329	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	13.33	12.58	10.27	8.45	16.77	20.38	12.95	5.13	16.33	21.59	22.11	11.9
Merged-chr12-21568716-2	chr12	21568646	21568846	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-151310.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	16.56	7.29	18.83	11.66	3.27	4.08	15.94	9.5	0.0	0.0	3.52	1.88
Merged-chr11-69881475-1	chr11	69881375	69881575	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-490.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	12.11	7.55	15.4	10.86	10.64	13.48	3.65	10.12	17.31	24.1	12.06	11.9
Merged-chr10-94105640-1	chr10	94105540	94105740	+	947.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 7 of 20)	intron (NM_053072, intron 7 of 20)	-42291.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.81	0.5	2.28	0.8	0.82	0.0	0.66	0.84	17.31	10.54	19.09	12.84
Merged-chr10-26836768-3	chr10	26836702	26836902	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	64290.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	17.77	10.31	7.99	18.9	20.86	16.93	14.28	24.5	16.13	21.59	19.09	12.22
Merged-chr12-17522718-1	chr12	17522618	17522818	+	947.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22155.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.0	18.88	18.08	17.59	4.7
Merged-chr6-48047659-1	chr6	48047559	48047759	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001347139, exon 1 of 6)	5' UTR (NM_001347139, exon 1 of 6)	135.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	3.63	6.04	7.42	2.01	5.73	2.2	7.64	6.9	3.93	5.52	4.52	1.57
Merged-chr12-91012713-3	chr12	91012613	91012813	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-33135.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	11.71	9.81	10.27	12.47	21.68	14.11	16.28	21.45	22.03	11.05	25.63	5.64
Merged-chr6-24600339-1	chr6	24600239	24600439	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053098, intron 1 of 2)	intron (NM_053098, intron 1 of 2)	2568.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	2.42	1.76	3.99	9.65	1.64	3.14	6.64	10.57	2.95	2.01	12.56	6.58
Merged-chr17-35267173-1	chr17	35267073	35267273	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001267808)	TTS (NM_001267808)	4050.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	11.31	10.56	0.0	4.83	4.91	6.9	2.66	0.53	0.39	1.0	2.51	1.25
Merged-chr7-80998106-5	chr7	80998019	80998219	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	4435.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	12.11	12.83	13.12	10.46	5.73	4.08	7.31	9.59	9.24	12.05	15.07	8.46
Merged-chr16-31756651-2	chr16	31756539	31756739	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	2289.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	15.75	9.56	18.83	8.45	14.32	15.05	9.3	24.9	4.72	5.52	10.55	7.83
Merged-chr5-117138735-3	chr5	117138622	117138822	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	5134.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	16.56	12.58	12.55	15.28	12.27	6.59	7.97	27.48	12.98	6.03	22.61	12.53
Merged-chr6-149355333-1	chr6	149355233	149355433	+	947.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45919.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	1.21	1.51	4.56	3.22	1.64	0.94	2.66	3.56	22.82	15.06	22.11	10.02
Merged-chr9-97572609-1	chr9	97572509	97572709	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022319, intron 4 of 17)	intron (NM_022319, intron 4 of 17)	-202651.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	4.04	0.75	7.42	12.87	3.27	8.15	3.65	10.23	2.16	3.51	6.53	2.82
Merged-chr1-60974170-3	chr1	60974051	60974251	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3763.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.65	12.58	11.41	18.1	18.0	16.93	29.56	24.42	14.55	17.57	16.08	11.59
Merged-chr18-44758268-1	chr18	44758168	44758368	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001085373, intron 2 of 18)	intron (NM_001085373, intron 2 of 18)	53914.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	6.46	4.78	20.54	13.67	8.18	2.82	1.33	4.15	5.51	6.03	4.52	3.45
Merged-chr1-72711931-3	chr1	72711835	72712035	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009084, intron 2 of 3)	intron (NM_009084, intron 2 of 3)	675.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	9.29	12.32	10.84	2.41	14.73	25.71	18.6	6.7	27.73	28.12	19.6	13.16
Merged-chr8-110594343-3	chr8	110594256	110594456	+	946.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 79 of 86)	intron (NM_172916, intron 79 of 86)	-24211.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	28.27	35.72	46.21	12.07	6.95	24.46	10.96	14.44	38.55	21.09	36.68	14.1
Merged-chr15-67977657-3	chr15	67977570	67977770	+	946.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	281186.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	13.73	9.56	29.66	23.73	26.59	21.95	23.25	27.7	21.44	18.58	26.13	12.53
Merged-chr2-18903849-3	chr2	18903701	18903901	+	946.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355149, intron 3 of 10)	intron (NM_001355149, intron 3 of 10)	94320.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	17.77	12.07	18.25	20.51	15.14	8.15	12.95	16.35	15.34	10.04	13.57	9.71
Merged-chr19-8718518-3	chr19	8718420	8718620	+	946.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-4623.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	16.96	11.32	15.97	6.03	19.64	13.48	12.29	15.73	25.57	14.56	23.62	14.72
Merged-chr7-98106788-3	chr7	98106667	98106867	+	946.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	2481.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	10.5	22.64	39.36	45.85	15.55	5.64	8.64	7.96	32.45	23.1	37.69	16.6
Merged-chr8-70601444-3	chr8	70601347	70601547	+	946.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 4 of 16)	CpG	6867.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	19.38	14.09	21.11	17.29	7.36	15.05	6.98	10.63	33.04	25.61	37.18	21.62
Merged-chr14-19733504-3	chr14	19733377	19733577	+	946.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17780.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	12.11	11.82	21.68	19.71	14.73	16.31	14.62	18.31	15.14	14.56	13.06	14.41
Merged-chr11-21006897-3	chr11	21006794	21006994	+	946.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	22.21	10.06	11.41	21.32	13.09	20.38	23.58	23.1	24.0	18.08	13.57	14.72
Merged-chr1-184853471-3	chr1	184853378	184853578	+	946.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7631.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	10.9	9.06	17.11	12.07	28.64	27.28	9.97	14.64	34.81	19.08	35.17	18.48
Merged-chr1-171559012-3	chr1	171558879	171559079	+	946.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018729)	promoter-TSS (NM_018729)	-214.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	44.42	41.0	38.22	39.01	40.09	39.82	52.15	41.07	9.83	13.56	9.55	10.96
Merged-chr1-88562550-3	chr1	88562431	88562631	+	946.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037971)	TTS (NR_037971)	11014.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	12.92	6.79	23.96	9.25	21.68	15.37	7.97	12.81	21.05	17.07	19.09	10.65
Merged-chr10-40437360-2	chr10	40437275	40437475	+	946.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291817, intron 4 of 11)	L1_Mus2|LINE|L1	88067.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	12.92	11.57	21.68	22.12	15.14	11.6	20.26	10.46	6.29	3.51	12.56	6.27
Merged-chr4-132555156-2	chr4	132555053	132555253	+	946.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8914.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	8.88	6.54	5.7	3.22	19.23	26.97	8.3	13.74	12.59	22.09	14.07	8.77
Merged-chrUn_JH584304-12755-1	chrUn_JH584304	12655	12855	+	946.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	46934.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.9	17.07	16.08	20.99
Merged-chr6-72615306-3	chr6	72615198	72615398	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009443, intron 2 of 3)	intron (NM_009443, intron 2 of 3)	1450.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	22.61	10.56	7.99	6.84	11.86	24.46	4.65	7.88	29.11	20.08	9.55	7.52
Merged-chr7-98085545-3	chr7	98085435	98085635	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23713.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	19.79	11.82	13.69	9.65	17.18	22.89	11.29	12.62	17.31	15.57	19.09	15.66
Merged-chr9-83599634-3	chr9	83599540	83599740	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	51302.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	16.96	9.56	31.38	25.74	18.0	6.27	10.96	29.3	18.88	4.52	25.12	12.84
Merged-chr2-58920781-3	chr2	58920694	58920894	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	165610.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	16.15	13.08	19.97	8.45	8.59	30.1	11.29	13.79	17.31	23.1	21.61	21.3
Merged-chr16-20325539-1	chr16	20325439	20325639	+	946.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183158)	promoter-TSS (NM_183158)	-135.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.46	4.53	6.85	2.41	16.77	8.15	12.29	13.12	3.54	1.51	10.55	1.88
Merged-chr4-58568470-3	chr4	58568364	58568564	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14973.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	19.38	12.58	23.96	25.74	26.18	10.98	19.27	22.71	17.31	10.54	31.15	26.0
Merged-chr7-90461140-3	chr7	90461024	90461224	+	946.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3916.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	7.67	14.09	20.54	14.08	16.77	22.26	13.95	23.24	19.28	11.55	49.24	17.23
Merged-chr11-83067341-3	chr11	83067246	83067446	+	946.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	RLTR11A|LTR|ERVK	2234.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	13.73	18.61	21.68	7.64	14.32	25.71	7.97	11.92	21.05	23.6	24.12	15.04
Merged-chr16-10496199-3	chr16	10496126	10496326	+	946.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	6445.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	16.15	8.05	12.55	8.85	20.86	31.98	8.64	14.97	22.82	25.11	28.14	18.17
Merged-chr9-118868033-3	chr9	118867920	118868120	+	946.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-58516.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	16.15	16.35	30.8	34.99	13.09	26.97	18.6	29.44	17.31	14.56	37.18	13.16
Merged-chrX-10868254-3	chrX	10868163	10868363	+	946.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150898.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	17.77	20.63	30.23	12.07	15.96	30.42	22.59	15.03	20.85	21.09	16.08	13.47
Merged-chr4-141562437-3	chr4	141562302	141562502	+	946.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	16240.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	19.38	7.04	18.25	17.7	12.27	10.98	7.97	17.69	16.13	17.07	13.06	18.8
Merged-chr1-131981764-3	chr1	131981663	131981863	+	946.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145977, exon 5 of 5)	3' UTR (NM_145977, exon 5 of 5)	11154.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	12.92	9.56	14.26	18.1	15.14	27.28	15.61	16.6	15.54	12.55	13.06	11.28
Merged-chr16-55820501-6	chr16	55820411	55820611	+	946.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1627.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	19.38	9.81	12.55	6.03	15.96	24.77	8.97	4.35	28.72	19.08	29.65	8.77
Merged-chr7-110179408-3	chr7	110179294	110179494	+	946.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42309.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	13.33	10.06	18.25	8.45	15.96	10.66	4.98	10.88	26.36	10.54	18.59	6.27
Merged-chr5-122994659-3	chr5	122994571	122994771	+	946.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045820, intron 2 of 2)	intron (NR_045820, intron 2 of 2)	5317.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	23.02	18.36	15.4	16.49	30.68	25.4	15.94	12.08	22.03	24.6	19.09	6.58
Merged-chr2-75590346-3	chr2	75590239	75590439	+	946.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68920.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	21.8	14.34	14.83	6.44	13.91	23.2	12.62	14.22	16.92	16.07	22.11	9.4
Merged-chrX-8096580-3	chrX	8096468	8096668	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003632)	promoter-TSS (NR_003632)	-519.0	NR_003632	627782.0	Mm.305432	NM_001037930	ENSMUSG00000086404	Gm6787	EG627782	proteasome (prosome, macropain) subunit, beta type 7 pseudogene	pseudo	8.88	16.6	17.68	16.89	20.86	15.68	13.29	5.83	25.77	23.1	29.65	14.72
Merged-chr3-105016410-1	chr3	105016310	105016510	+	946.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	L1ME2|LINE|L1	36543.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.67	5.53	8.56	4.83	11.86	10.98	3.99	10.37	9.64	4.02	5.02	3.13
Merged-chrX-57392609-3	chrX	57392528	57392728	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166623, intron 1 of 8)	CpG	408.0	NM_011252	19655.0	Mm.28275	NM_011252	ENSMUSG00000031134	Rbmx	hnRNP G	RNA binding motif protein, X chromosome	protein-coding	17.77	17.1	10.84	12.47	17.18	17.25	10.96	14.61	12.59	17.57	24.12	9.4
Merged-chr3-55353530-6	chr3	55353425	55353625	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-108203.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	9.69	12.83	26.81	30.16	21.68	25.71	27.57	29.44	26.95	32.64	35.17	24.75
Merged-chr11-95336868-3	chr11	95336766	95336966	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-152.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	14.13	9.81	10.84	19.31	20.05	22.58	10.63	11.69	19.67	23.6	22.11	8.77
Merged-chr4-89294802-3	chr4	89294717	89294917	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-198.0	NM_009877	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	10.9	9.81	7.99	12.07	32.32	30.1	23.58	33.9	16.13	22.59	31.15	15.35
Merged-chr9-100456495-3	chr9	100456382	100456582	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	29991.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	19.38	19.12	23.39	7.24	25.36	29.79	20.26	13.43	11.01	12.05	14.07	2.82
Merged-chr8-33730869-3	chr8	33730724	33730924	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1090.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	6.06	9.06	6.85	15.69	26.18	12.23	14.62	17.38	21.44	21.09	13.06	14.1
Merged-chr8-117465481-3	chr8	117465403	117465603	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91B|DNA|hAT-Tip100	6238.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	20.19	21.38	9.13	13.67	8.18	27.91	10.96	14.41	20.46	30.13	23.62	17.54
Merged-chr1-74380557-3	chr1	74380452	74380652	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 6 of 14)	intron (NM_013612, intron 6 of 14)	5349.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	9.69	8.55	31.38	16.49	15.55	19.13	11.63	19.29	18.49	27.11	31.66	24.43
Merged-chr7-66125565-3	chr7	66125468	66125668	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081163, exon 2 of 3)	exon (NM_001081163, exon 2 of 3)	16053.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	10.9	6.79	21.11	24.53	20.86	17.87	9.97	33.64	24.98	18.08	25.63	14.1
Merged-chr18-62985436-3	chr18	62985344	62985544	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028017, intron 5 of 11)	intron (NM_028017, intron 5 of 11)	7528.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	14.13	10.82	19.97	13.27	26.59	26.97	12.95	16.29	23.8	14.56	25.63	16.6
Merged-chr7-100182589-3	chr7	100182488	100182688	+	946.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190869, intron 3 of 4)	intron (NM_001190869, intron 3 of 4)	3905.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	18.17	19.87	10.27	14.48	24.55	23.83	13.95	26.05	32.45	16.07	23.62	21.3
Merged-chr6-98092359-3	chr6	98092267	98092467	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	100584.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.85	10.06	5.7	16.89	15.96	21.01	28.23	25.88	17.7	25.61	21.1	14.41
Merged-chr2-155762060-3	chr2	155761963	155762163	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10846.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	5.25	18.11	23.39	8.04	2.86	16.93	8.3	1.91	19.87	18.08	15.07	3.13
Merged-chr7-80229886-3	chr7	80229791	80229991	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291276, intron 1 of 4)	PB1D10|SINE|Alu	2914.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	14.54	17.36	14.26	18.9	19.64	10.98	17.94	22.51	26.36	11.05	29.65	13.16
Merged-chr10-41888588-3	chr10	41888491	41888691	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	1152.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	17.36	17.1	6.28	7.64	19.64	16.31	12.29	16.93	18.49	22.09	22.61	8.77
Merged-chr1-171551578-2	chr1	171551480	171551680	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7613.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	18.57	16.1	21.11	23.73	24.55	20.7	7.97	29.07	2.36	0.0	0.5	1.88
Merged-chr7-49923146-1	chr7	49923046	49923246	+	946.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146013, intron 5 of 15)	PB1D11|SINE|Alu	11446.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	7.27	3.52	3.42	12.07	15.96	12.54	9.97	9.34	1.38	8.03	6.03	3.76
Merged-chr9-40802178-2	chr9	40802071	40802271	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031165, intron 2 of 8)	intron (NM_031165, intron 2 of 8)	898.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	46.03	105.14	15.4	16.49	35.18	87.49	5.65	18.0	28.72	65.27	16.08	10.96
Merged-chr19-9953000-3	chr19	9952894	9953094	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27606.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	22.21	13.58	23.39	8.45	18.82	15.37	17.27	13.68	39.93	27.11	28.14	20.68
Merged-chr4-15233891-2	chr4	15233796	15233996	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31924.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	20.19	9.06	19.4	33.78	21.68	16.31	27.9	46.63	0.0	0.0	0.5	0.0
Merged-chr6-124319733-2	chr6	124319632	124319832	+	946.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170395, intron 10 of 16)	intron (NM_001170395, intron 10 of 16)	15081.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	8.48	2.26	6.85	2.41	19.23	22.26	17.27	14.72	16.92	4.52	10.05	6.58
Merged-chr4-89265694-3	chr4	89265576	89265776	+	946.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	16516.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	18.17	10.31	16.54	15.28	18.41	9.72	4.65	20.3	17.31	14.56	20.6	13.78
Merged-chr2-122029029-3	chr2	122028972	122029172	+	946.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256055, intron 2 of 7)	CpG-8471	489.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	18.17	24.65	11.41	26.55	20.46	28.85	27.24	21.53	21.64	24.6	47.74	32.89
Merged-chr17-8158873-3	chr17	8158753	8158953	+	946.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6665.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	63.4	58.86	65.6	59.93	54.0	60.52	51.15	38.89	36.98	15.06	19.6	10.34
Merged-chr5-65136387-3	chr5	65136285	65136485	+	946.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	5154.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	12.92	19.12	19.97	10.05	21.27	20.07	16.94	11.19	23.41	15.06	26.63	19.74
Merged-chr7-97798287-3	chr7	97798185	97798385	+	946.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	L2c|LINE|L2	9744.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	12.11	12.83	23.96	19.31	21.68	16.62	14.62	20.78	16.92	8.54	15.07	9.71
Merged-chr10-71239727-3	chr10	71239617	71239817	+	946.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	10.5	14.09	14.26	9.25	19.23	22.89	16.61	15.7	22.03	6.03	19.09	5.95
Merged-chr18-69570489-3	chr18	69570388	69570588	+	946.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	224328.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	18.57	10.06	17.11	10.05	17.18	18.5	17.61	22.01	9.83	24.6	20.1	11.28
Merged-chr10-121376584-3	chr10	121376452	121376652	+	946.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 4 of 13)	intron (NM_029364, intron 4 of 13)	11462.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	10.5	14.09	18.83	16.89	21.27	21.64	34.55	36.45	21.83	27.11	22.61	20.05
Merged-chr4-150035496-3	chr4	150035391	150035591	+	946.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26468.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	32.71	25.15	34.23	12.07	24.14	45.15	19.27	30.42	38.35	22.59	36.68	10.65
Merged-chr13-44229456-2	chr13	44229400	44229600	+	946.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13013.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	9.29	6.79	3.42	4.02	13.91	17.87	8.3	11.86	2.75	0.5	1.0	0.94
Merged-chr5-73257340-2	chr5	73257259	73257459	+	946.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-741.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	6.06	4.02	3.99	3.22	9.0	11.6	4.32	8.3	10.03	7.03	22.61	2.19
Merged-chr10-119004066-3	chr10	119003897	119004097	+	946.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	46502.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.25	11.82	9.7	6.44	13.5	13.17	14.28	19.01	11.21	15.06	17.08	11.59
Merged-chr16-94236911-3	chr16	94236810	94237010	+	946.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	53381.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	23.02	24.9	23.39	12.87	46.23	24.77	5.98	22.18	30.88	32.64	27.13	14.41
Merged-chr4-67473226-1	chr4	67473126	67473326	+	946.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	645675.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	2.42	1.76	1.71	3.22	17.18	10.35	20.26	12.2	3.54	0.0	2.51	3.45
Merged-chr14-56690890-3	chr14	56690800	56691000	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	10100.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	12.92	12.32	22.25	21.72	13.91	15.37	24.58	19.51	11.21	15.06	24.12	15.66
Merged-chr13-107676566-3	chr13	107676469	107676669	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-10828.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	18.98	13.58	22.82	32.58	15.55	22.26	19.6	26.1	10.03	16.07	24.62	14.1
Merged-chr4-150240191-3	chr4	150240072	150240272	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2848.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	14.13	16.35	9.13	12.87	13.5	20.7	28.23	13.09	24.0	42.68	34.67	17.23
Merged-chr1-134791213-3	chr1	134791101	134791301	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	12520.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	29.07	19.87	12.55	25.34	19.64	20.7	19.27	18.17	14.95	32.64	20.6	10.65
Merged-chr11-50291036-3	chr11	50290914	50291114	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	1322.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	18.98	13.08	25.67	16.49	10.23	24.77	10.96	15.64	29.5	20.08	21.61	15.04
Merged-chr19-42019047-3	chr19	42018960	42019160	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	RLTR34B_MM|LTR|ERVK	-16978.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	28.67	20.12	27.38	26.95	31.09	40.76	21.59	33.53	11.01	15.57	25.63	6.89
Merged-chr6-124696017-3	chr6	124695917	124696117	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	16161.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	14.94	18.86	13.69	20.11	14.73	15.37	12.29	15.06	26.36	15.06	21.1	13.16
Merged-chrX-142228609-3	chrX	142228511	142228711	+	946.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290533)	promoter-TSS (NM_001290533)	-92.0	NM_001290533	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	11.31	15.09	12.55	12.47	10.23	23.83	23.92	12.76	15.93	27.62	27.13	15.66
Merged-chr2-116972749-3	chr2	116972652	116972852	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72600.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	46.44	29.18	19.97	12.07	27.0	45.78	11.63	20.47	36.39	42.18	45.73	14.72
Merged-chr15-90109615-3	chr15	90109539	90109739	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114672.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	16.56	7.8	14.83	15.28	49.91	23.83	41.19	57.9	24.0	35.65	43.21	5.33
Merged-chr10-96910113-3	chr10	96910013	96910213	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125655.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	13.33	6.29	11.41	12.87	17.59	18.81	9.63	18.45	23.01	15.06	18.09	3.76
Merged-chr17-26638819-3	chr17	26638618	26638818	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 7 of 9)	intron (NM_026170, intron 7 of 9)	-37678.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	2.02	8.3	3.42	2.82	4.91	3.76	2.33	4.6	6.88	11.55	2.01	6.58
Merged-chr7-105691054-3	chr7	105690963	105691163	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45521.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	24.23	13.58	14.83	25.34	15.96	22.58	16.94	27.62	18.69	14.06	24.12	19.11
Merged-chr6-93127624-3	chr6	93127521	93127721	+	946.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187039.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	23.02	12.58	30.23	48.67	74.05	79.33	87.69	98.33	23.6	10.04	17.08	15.04
Merged-chr11-61839498-4	chr11	61839405	61839605	+	946.255981	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 5 of 26)	B1_Mur4|SINE|Alu	15587.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	5.65	10.82	20.54	12.07	11.45	12.86	7.97	10.46	13.37	17.57	8.54	8.46
Merged-chr4-8645701-1	chr4	8645601	8645801	+	946.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44705.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.46	4.53	9.13	5.63	8.18	14.74	13.29	12.62	7.47	16.07	9.55	5.95
Merged-chr1-132477431-3	chr1	132477331	132477531	+	946.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	64.0	NM_172517	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	23.82	19.12	22.25	9.65	21.27	20.7	16.94	14.05	18.69	25.11	22.11	11.28
Merged-chr6-99665619-3	chr6	99665548	99665748	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	1123.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	20.59	8.8	21.68	23.33	13.09	13.8	4.32	10.29	31.08	10.54	17.08	6.58
Merged-chr17-70847998-3	chr17	70847891	70848091	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	-1214.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	14.94	20.37	19.4	7.24	14.73	21.95	8.3	8.36	24.0	20.59	10.05	12.84
Merged-chr2-35978756-3	chr2	35978670	35978870	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 1 of 9)	intron (NM_029774, intron 1 of 9)	854.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	14.54	16.85	14.26	8.85	33.14	29.79	15.94	19.37	20.65	36.15	23.11	14.41
Merged-chr13-20111458-3	chr13	20111348	20111548	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	20941.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	20.19	37.48	25.1	9.65	34.36	40.45	25.91	28.79	36.78	42.18	37.18	25.69
Merged-chr17-88368066-3	chr17	88367963	88368163	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72641.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.06	3.27	29.66	29.36	14.73	14.74	28.23	29.24	16.13	10.04	19.6	14.1
Merged-chr11-120489463-3	chr11	120489384	120489584	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027204)	TTS (NM_027204)	-2353.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	14.94	15.85	10.27	8.04	21.27	20.7	4.98	13.15	20.46	29.12	22.11	16.29
Merged-chr16-85117654-3	chr16	85117562	85117762	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	56045.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	12.92	6.04	23.39	22.12	17.18	10.66	13.62	30.17	5.51	13.05	18.09	18.8
Merged-chr15-66817178-3	chr15	66817076	66817276	+	946.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	14653.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	18.57	17.86	18.25	17.29	18.0	15.05	18.27	16.32	19.87	20.59	9.55	9.4
Merged-chr2-164938922-3	chr2	164938820	164939020	+	946.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9299.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	12.11	21.38	26.24	12.07	20.46	25.09	16.61	12.31	21.05	19.58	28.64	15.66
Merged-chrX-77511931-3	chrX	77511830	77512030	+	946.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	703.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	16.56	24.9	3.42	3.62	16.77	33.24	16.28	5.27	19.47	17.07	24.12	8.14
Merged-chr14-32784270-3	chr14	32784149	32784349	+	946.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1714.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	16.96	10.31	17.68	17.29	21.68	20.07	12.62	21.87	14.75	12.05	24.62	9.08
Merged-chr9-96559259-4	chr9	96559164	96559364	+	946.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 16 of 23)	MLTR11B|LTR|ERVK	72239.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	10.9	14.34	13.12	18.5	9.41	10.98	13.62	9.5	15.93	8.54	14.57	9.71
Merged-chr4-129608789-3	chr4	129608703	129608903	+	946.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029748)	TTS (NM_029748)	5454.0	NM_001195730	100504491.0	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366	doublecortin domain containing 2b	protein-coding	21.0	20.63	18.25	30.57	24.14	20.7	12.29	19.96	17.11	18.58	19.09	8.77
Merged-chr2-158154220-3	chr2	158154117	158154317	+	946.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7825.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	12.92	15.59	22.25	9.25	35.18	16.93	14.28	17.07	22.82	29.12	28.14	22.56
Merged-chr11-3171987-2	chr11	3171836	3172036	+	946.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B1_Mur4|SINE|Alu	21527.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	14.94	12.07	11.98	8.04	13.91	10.35	14.62	6.67	3.54	2.51	0.0	1.25
Merged-chr2-127524629-3	chr2	127524515	127524715	+	946.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2521.0	NR_110989	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	8.88	14.34	14.26	24.13	15.96	14.74	12.95	10.93	36.58	35.15	62.81	31.95
Merged-chr1-85977885-3	chr1	85977775	85977975	+	946.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16820.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	19.38	14.59	10.84	8.85	23.73	30.73	15.28	4.54	25.37	40.67	32.66	8.14
Merged-chr7-16019598-3	chr7	16019483	16019683	+	946.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-20088.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	18.98	13.08	22.82	20.51	23.73	18.81	20.59	30.36	20.46	15.57	12.06	15.35
Merged-chr14-75178814-4	chr14	75178678	75178878	+	946.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	42353.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	8.08	5.79	10.27	12.87	15.14	13.17	11.96	7.79	19.08	25.11	29.14	6.58
Merged-chr5-136173767-3	chr5	136173707	136173907	+	946.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3151.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	11.71	14.59	14.26	8.04	15.96	10.35	15.28	5.38	18.69	25.61	17.59	4.7
Merged-chr4-140701955-3	chr4	140701883	140702083	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173867, intron 1 of 12)	CpG	510.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	25.84	16.6	13.12	22.93	8.59	20.38	14.62	14.27	27.73	16.57	17.08	19.74
Merged-chr6-39430911-3	chr6	39430817	39431017	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	10539.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	31.9	25.4	22.82	16.09	30.68	21.64	20.93	11.36	18.49	19.58	28.64	7.21
Merged-chr15-81045546-3	chr15	81045434	81045634	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	59513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	27.86	21.13	41.64	32.58	33.96	19.13	25.91	31.15	27.73	10.04	27.64	13.78
Merged-chr1-9548787-3	chr1	9548630	9548830	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	782.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	12.52	14.84	17.68	4.83	9.41	12.54	12.29	5.86	14.75	14.56	5.02	3.13
Merged-chr3-51365468-3	chr3	51365382	51365582	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-24838.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	18.98	16.6	10.84	9.65	15.14	17.56	11.96	16.04	26.16	16.07	31.66	13.78
Merged-chr9-116243904-3	chr9	116243826	116244026	+	946.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54746.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	28.27	47.04	35.94	17.7	8.59	38.88	21.26	13.71	25.57	12.05	16.08	7.83
Merged-chr10-8849642-3	chr10	8849551	8849751	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	36419.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	17.36	11.57	34.8	18.1	18.41	26.03	17.94	30.36	7.87	16.07	18.09	5.64
Merged-chr10-68134744-2	chr10	68134646	68134846	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	143980.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.04	3.02	1.14	3.62	9.82	4.7	10.63	15.53	10.62	17.57	23.62	4.7
Merged-chr17-46524230-3	chr17	46524139	46524339	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081335, intron 16 of 40)	intron (NM_001081335, intron 16 of 40)	22149.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	9.69	10.56	10.27	10.86	20.46	18.81	16.28	25.77	25.18	16.07	18.59	14.41
Merged-chr16-92676648-3	chr16	92676542	92676742	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	20687.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	12.92	16.35	15.4	6.03	6.14	21.95	11.63	14.3	23.6	23.1	21.61	13.47
Merged-chr15-67899583-3	chr15	67899504	67899704	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	359252.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	19.38	11.07	18.83	11.26	31.5	39.51	23.25	21.67	33.04	44.19	22.61	19.11
Merged-chr2-137969446-1	chr2	137969346	137969546	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-287138.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.81	1.26	0.0	2.82	4.09	3.14	4.32	7.12	2.95	4.52	3.52	3.76
Merged-chr6-70790483-1	chr6	70790383	70790583	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1692.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.65	2.52	10.27	4.02	20.05	3.45	3.99	8.75	4.33	7.03	5.02	7.21
Merged-chr1-177443510-1	chr1	177443410	177443610	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355100, intron 2 of 2)	intron (NM_001355100, intron 2 of 2)	-1143.0	NM_001355103	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.81	7.29	5.13	10.05	13.91	6.9	2.99	9.81	6.29	10.54	4.02	5.01
Merged-chr4-62561446-3	chr4	62561329	62561529	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 1 of 19)	intron (NM_019492, intron 1 of 19)	1582.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	25.84	11.32	12.55	17.29	23.73	26.65	12.95	27.73	24.39	16.57	24.12	14.41
Merged-chr10-67283721-1	chr10	67283621	67283821	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	1560.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.06	3.02	5.13	1.21	2.05	12.23	1.66	6.56	5.9	7.03	4.52	3.13
Merged-chr2-129570407-3	chr2	129570316	129570516	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-22423.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	28.27	22.39	39.93	19.31	1.23	14.74	21.59	6.28	24.98	25.11	29.65	14.72
Merged-chr1-72106804-3	chr1	72106699	72106899	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101604.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	10.9	10.06	19.4	18.5	107.59	118.53	117.59	134.75	101.29	123.52	215.06	83.02
Merged-chr2-59954887-1	chr2	59954787	59954987	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 12 of 35)	intron (NM_001001182, intron 12 of 35)	-72281.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.04	3.02	5.13	7.24	6.14	3.45	10.63	9.56	2.16	0.5	1.0	3.45
Merged-chr13-37290881-3	chr13	37290790	37290990	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54455.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	9.29	15.34	14.26	12.87	23.73	21.95	15.94	22.32	22.82	22.09	31.66	23.49
Merged-chr10-117897351-2	chr10	117897259	117897459	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-28100.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	10.09	5.53	6.28	18.5	16.36	6.27	5.65	18.56	6.1	9.04	20.1	13.16
Merged-chr17-47139875-2	chr17	47139753	47139953	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1089.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	21.0	15.59	14.26	17.29	11.45	17.56	8.3	14.52	5.9	10.54	10.55	2.19
Merged-chr2-167944478-1	chr2	167944378	167944578	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12151.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.42	2.01	7.99	1.61	5.32	2.2	4.98	7.46	2.36	2.01	4.02	3.76
Merged-chr4_GL456216_random-34969-1	chr4_GL456216_random	34869	35069	+	946.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 6 of 6)	CpG-10796	19088.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.51	18.58	16.58	16.6
Merged-chr12-4158387-1	chr12	4158287	4158487	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	RMER10A|LTR|ERVL	24234.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	2.02	4.53	7.42	10.05	15.14	10.98	16.94	16.74	3.74	3.01	4.52	5.01
Merged-chr9-65546447-3	chr9	65546334	65546534	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	33653.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	16.96	17.1	13.69	9.25	52.37	32.3	21.92	23.92	35.8	31.63	49.75	25.06
Merged-chr18-32818735-3	chr18	32818664	32818864	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1904.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	33.11	22.39	33.66	8.04	16.36	41.08	33.88	12.14	56.84	55.73	41.71	13.78
Merged-chr3-13551437-1	chr3	13551337	13551537	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	78638.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	2.02	2.52	5.7	2.01	4.09	3.14	6.98	7.63	6.29	3.01	5.02	3.45
Merged-chr11-18878212-1	chr11	18878112	18878312	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140757.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	9.69	3.77	2.85	2.41	10.23	16.62	6.31	3.56	10.82	9.54	8.04	2.51
Merged-chr11-77491248-3	chr11	77491155	77491355	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1577.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	14.94	9.56	9.13	5.23	10.64	10.66	13.62	11.05	19.47	7.53	19.09	12.22
Merged-chr6-48841398-3	chr6	48841275	48841475	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164209)	promoter-TSS (NM_001164209)	-1.0	NM_001164208	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	16.56	15.85	6.85	13.67	16.77	15.99	14.28	11.52	17.7	13.56	23.62	11.59
Merged-chr3-144232127-3	chr3	144232032	144232232	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26877.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	13.73	9.81	26.81	11.26	26.18	23.52	12.62	20.92	19.08	22.59	35.68	10.02
Merged-chr17-29393771-3	chr17	29393655	29393855	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32841.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	17.36	27.67	12.55	5.63	15.14	43.59	6.98	2.75	34.81	25.61	18.59	8.46
Merged-chr14-17879675-3	chr14	17879585	17879785	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-101959.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	18.57	16.85	15.97	26.95	13.91	20.07	14.95	27.0	19.47	11.55	19.6	8.77
Merged-chr18-20750062-3	chr18	20749954	20750154	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3650.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	24.23	10.31	13.69	32.58	52.77	43.9	54.48	73.96	55.07	33.64	92.96	26.63
Merged-chr13-113036088-3	chr13	113036010	113036210	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030452)	TTS (NR_030452)	127.0	NR_030452	735309.0		NR_030452	ENSMUSG00000076146	Mir449c	Mirn449b|Mirn449c|mir-449c	microRNA 449c	ncRNA	16.15	12.83	13.69	21.72	18.82	15.68	6.31	18.53	23.8	14.06	24.62	21.62
Merged-chr19-47406688-3	chr19	47406576	47406776	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	ID_B1|SINE|B4	57735.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	11.71	7.04	17.68	16.49	23.32	24.15	27.57	28.26	16.33	32.13	29.14	6.89
Merged-chr10-7852076-3	chr10	7851974	7852174	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	15693.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	33.92	26.16	27.95	18.5	27.0	20.7	18.27	24.87	26.16	4.52	14.07	16.29
Merged-chr5-62821761-3	chr5	62821651	62821851	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7928.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	12.52	19.62	12.55	17.29	15.14	19.76	22.26	10.26	15.74	9.04	9.04	5.01
Merged-chr17-86964763-3	chr17	86964673	86964873	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	1662.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	22.21	20.63	9.7	10.86	41.73	43.27	20.59	28.49	56.25	39.16	60.8	25.37
Merged-chr3-9801849-3	chr3	9801754	9801954	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	31825.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	16.56	24.15	10.27	13.27	23.32	26.34	11.63	14.61	38.94	25.11	34.17	10.34
Merged-chr7-80024364-3	chr7	80024263	80024463	+	945.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146000)	promoter-TSS (NM_001146000)	-451.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	12.11	12.07	10.84	7.24	15.96	4.39	10.96	16.77	17.7	17.57	14.57	17.23
Merged-chr2-27691322-3	chr2	27691227	27691427	+	945.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	14126.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	30.69	17.36	33.66	18.1	13.91	18.5	8.64	19.88	16.72	15.57	8.04	10.02
Merged-chr18-79293950-3	chr18	79293845	79294045	+	945.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184554.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	8.88	17.61	22.82	25.34	22.09	28.85	33.55	36.11	22.62	22.59	25.12	10.34
Merged-chr2-157447308-2	chr2	157447216	157447416	+	945.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 2 of 13)	L1M4|LINE|L1	23023.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	30.69	25.4	21.68	14.48	38.86	35.12	17.94	15.76	12.78	6.03	3.52	5.33
Merged-chr5-87204501-3	chr5	87204398	87204598	+	945.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	50290.0	NM_053215	112417.0	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	2.02	0.0	1.14	4.83	2.45	5.33	10.3	6.22	7.08	6.03	9.55	8.46
Merged-chr11-103406033-3	chr11	103405919	103406119	+	945.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6645.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	11.71	14.59	14.83	11.66	21.68	18.19	17.94	20.24	33.04	26.11	27.13	19.74
Merged-chr7-16312359-3	chr7	16312247	16312447	+	945.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133234, exon 2 of 4)	exon (NM_133234, exon 2 of 4)	2764.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	20.59	19.87	21.11	8.85	13.5	25.4	21.92	18.7	24.19	28.62	23.11	18.48
Merged-chr17-88452598-3	chr17	88452492	88452692	+	945.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	L1Md_F2|LINE|L1	11888.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	18.17	30.43	15.97	18.1	25.77	38.88	6.31	1.29	24.0	20.08	15.58	5.64
Merged-chr11-111066606-3	chr11	111066507	111066707	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	443.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	11.71	5.79	13.12	14.88	18.0	9.41	10.96	9.03	15.74	11.05	18.59	10.65
Merged-chr19-25058016-3	chr19	25057925	25058125	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	58496.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	25.84	10.31	13.69	28.96	34.77	21.95	16.94	27.73	26.75	18.58	16.58	13.47
Merged-chr10-41523978-3	chr10	41523868	41524068	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	4468.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	21.0	14.59	22.25	20.51	16.77	21.95	10.63	22.4	20.06	18.58	18.09	10.65
Merged-chr4-46390656-3	chr4	46390550	46390750	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1213.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	14.54	13.33	18.83	20.91	16.77	29.48	12.95	25.74	28.72	25.61	35.17	18.48
Merged-chr13-99029069-3	chr13	99028962	99029162	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44497.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	19.79	8.8	19.4	25.74	20.46	19.13	23.25	30.48	18.49	17.07	29.14	23.81
Merged-chr2-84601238-3	chr2	84601239	84601439	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	48141.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	1.62	2.52	11.98	6.44	3.68	2.82	5.31	6.7	7.47	7.03	6.53	8.14
Merged-chr19-41895753-3	chr19	41895638	41895838	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199447, intron 1 of 33)	intron (NM_199447, intron 1 of 33)	415.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	12.92	15.59	15.97	14.88	15.55	21.01	6.31	11.3	14.75	18.08	16.08	10.02
Merged-chr9-90270833-3	chr9	90270729	90270929	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-60.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	11.71	8.05	16.54	4.83	17.18	21.32	15.94	24.25	26.55	26.61	60.8	20.05
Merged-chr1-170806376-2	chr1	170806276	170806476	+	945.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 9 of 15)	intron (NM_001081304, intron 9 of 15)	61395.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	2.02	4.53	1.14	8.04	34.77	16.31	18.6	25.54	16.52	17.57	33.67	11.9
Merged-chr10-83910912-3	chr10	83910902	83911102	+	945.746033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	188137.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	2.42	6.54	3.42	4.42	2.45	3.45	7.97	4.07	7.08	6.03	11.05	10.65
Merged-chr5-123257293-3	chr5	123257244	123257444	+	945.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	29154.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	14.13	13.58	12.55	3.62	19.23	22.26	12.62	10.88	15.93	18.08	5.02	7.52
Merged-chr13-51395893-3	chr13	51395766	51395966	+	945.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12752.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	19.38	10.31	11.41	25.74	27.0	18.19	28.57	27.22	27.73	26.61	18.09	17.86
Merged-chr2-59332760-3	chr2	59332646	59332846	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	53936.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	10.09	11.82	23.96	17.29	19.23	23.52	20.93	25.49	35.4	32.13	59.29	20.68
Merged-chr2-5741094-3	chr2	5740970	5741170	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26308.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	24.23	17.1	23.39	20.91	12.27	13.17	14.28	12.56	11.21	11.55	15.58	14.1
Merged-chr3-88718051-3	chr3	88717933	88718133	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	1179.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	23.42	9.56	10.84	13.67	17.18	15.37	18.6	21.53	29.9	18.58	34.17	24.43
Merged-chr9-106280582-3	chr9	106280475	106280675	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	-486.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	29.48	21.13	19.4	14.88	10.64	18.19	7.64	15.14	14.16	18.08	19.6	9.4
Merged-chr6-134752433-3	chr6	134752328	134752528	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-39932.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	13.33	11.57	14.83	22.12	12.27	24.77	22.26	26.38	30.49	24.6	43.21	21.93
Merged-chr12-3434849-3	chr12	3434752	3434952	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	7995.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	27.05	37.23	22.25	19.71	13.09	40.45	12.62	5.55	44.06	43.68	38.69	12.53
Merged-chr5-92332595-3	chr5	92332537	92332737	+	945.70636	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	810.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	12.92	11.07	13.69	8.85	11.86	16.62	13.29	6.42	22.42	15.57	13.06	9.4
Merged-chr5-28315740-1	chr5	28315640	28315840	+	945.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR87|LTR|ERVL?	-1449.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	8.48	4.02	6.85	12.07	13.5	3.45	11.63	17.92	6.88	1.0	6.53	4.39
Merged-chr13-5726193-3	chr13	5726076	5726276	+	945.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131916.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	10.9	28.42	19.97	18.1	28.23	26.03	33.22	42.45	28.13	31.13	36.18	15.35
Merged-chr7-143053545-3	chr7	143053472	143053672	+	945.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110354, exon 1 of 5)	non-coding (NR_110354, exon 1 of 5)	114.0	NR_110355	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	18.98	18.11	24.53	8.45	24.96	25.09	16.94	10.71	28.91	27.11	27.64	17.23
Merged-chr14-19777087-3	chr14	19776985	19777185	+	945.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25828.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	17.36	14.34	15.97	22.52	20.46	19.13	21.59	20.05	27.73	24.1	32.66	10.65
Merged-chr15-90323423-2	chr15	90323348	90323548	+	945.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30262.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.85	2.01	6.85	12.47	20.46	7.84	12.62	20.66	8.06	6.53	9.04	11.28
Merged-chr3-88521897-2	chr3	88521802	88522002	+	945.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10493.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	8.08	8.05	4.56	5.63	6.55	4.08	11.29	8.41	4.72	7.53	19.6	11.28
Merged-chr16-94617505-4	chr16	94617442	94617642	+	945.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	6123.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.46	6.29	13.12	2.82	28.23	11.92	12.29	8.58	10.42	6.53	22.11	6.58
Merged-chr10-88420839-3	chr10	88420751	88420951	+	945.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-38736.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	16.96	20.12	50.2	46.66	25.77	19.13	9.63	24.9	17.51	15.06	23.11	22.56
Merged-chr3-158077595-3	chr3	158077500	158077700	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40918.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	12.92	20.88	39.93	30.16	33.55	20.7	28.9	39.36	35.21	13.56	52.26	15.98
Merged-chr13-8861140-3	chr13	8861028	8861228	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172445, exon 2 of 14)	exon (NM_172445, exon 2 of 14)	9916.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	12.52	14.34	33.09	25.34	18.0	11.29	8.64	28.63	28.52	18.58	15.58	10.34
Merged-chr16-91853756-3	chr16	91853670	91853870	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 22 of 39)	exon (NM_010587, exon 22 of 39)	77860.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	12.11	11.57	23.96	14.88	27.0	23.2	8.3	21.67	17.51	15.57	25.63	20.68
Merged-chr16-33915185-3	chr16	33915076	33915276	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	51862.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	12.92	12.83	13.12	24.94	29.05	17.25	24.91	41.8	15.74	15.06	27.13	15.66
Merged-chr13-104611470-3	chr13	104611372	104611572	+	945.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	205481.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	14.54	11.57	10.27	20.11	24.55	21.64	16.94	33.84	40.12	33.14	45.22	22.56
Merged-chr5-41525681-3	chr5	41525585	41525785	+	945.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	182006.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	14.94	22.39	36.51	37.4	10.23	5.96	5.65	12.79	74.54	60.75	101.5	57.33
Merged-chr5-24035085-3	chr5	24034956	24035156	+	945.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4366.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.46	11.57	22.25	14.48	13.09	10.03	7.31	15.56	14.75	11.05	33.16	6.58
Merged-chr11-118148654-3	chr11	118148576	118148776	+	945.5714109999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19457.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.44	4.78	7.99	4.42	13.91	14.42	10.96	13.99	6.69	9.04	7.03	7.52
Merged-chr2-6695626-3	chr2	6695518	6695718	+	945.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	26044.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	10.09	8.8	20.54	13.67	14.32	14.11	17.27	27.17	20.65	14.06	27.13	14.41
Merged-chr4-125122554-3	chr4	125122410	125122610	+	945.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5371.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	17.36	9.06	15.4	11.66	8.18	15.37	13.29	13.35	22.23	9.54	14.57	9.4
Merged-chr1-136126383-3	chr1	136126266	136126466	+	945.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	4817.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	13.33	10.82	9.13	18.9	22.09	12.86	15.61	34.65	32.26	30.13	53.77	17.23
Merged-chr7-39518710-3	chr7	39518605	39518805	+	945.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004139, intron 1 of 3)	ID_B1|SINE|B4	939.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	12.11	12.83	12.55	25.74	17.59	16.62	13.95	19.49	42.09	28.12	46.23	16.6
Merged-chr7-45593290-3	chr7	45593183	45593383	+	945.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18107.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	24.63	18.61	25.1	12.47	20.05	49.86	17.61	17.89	36.98	37.16	27.13	8.46
Merged-chr4-124751920-2	chr4	124751831	124752031	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-577.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	12.92	22.13	18.25	6.44	15.14	6.27	7.31	12.5	7.67	12.55	9.04	10.34
Merged-chr14-75231246-1	chr14	75231146	75231346	+	945.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001247984)	TTS (NM_001247984)	-11041.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	3.23	5.79	7.42	4.83	5.73	4.7	11.29	7.88	6.1	9.04	7.03	10.65
Merged-chr16-90461536-3	chr16	90461430	90461630	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	75133.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	13.73	18.61	18.83	12.87	13.91	28.22	12.29	16.43	12.59	14.06	17.59	13.16
Merged-chr9-71179497-3	chr9	71179396	71179596	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	MIR|SINE|MIR	10720.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	12.52	12.83	19.4	16.89	16.77	23.83	18.93	20.3	38.94	29.62	26.13	27.88
Merged-chr11-29149077-2	chr11	29148976	29149176	+	945.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	18325.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	6.46	4.53	7.42	5.63	6.14	11.92	10.96	13.99	20.06	13.05	17.59	12.22
Merged-chr14-19768892-3	chr14	19768794	19768994	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008695, exon 4 of 21)	exon (NM_008695, exon 4 of 21)	17637.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	18.17	11.82	14.83	14.88	29.86	22.58	13.95	27.62	24.78	20.59	38.69	7.83
Merged-chr13-85189960-2	chr13	85189857	85190057	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023243, intron 1 of 8)	intron (NM_023243, intron 1 of 8)	572.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	21.0	24.65	10.84	28.96	26.18	17.56	27.9	19.01	24.19	25.61	22.11	18.8
Merged-chr10-44607466-3	chr10	44607367	44607567	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148719.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	22.61	12.32	23.96	13.67	24.55	26.03	7.31	22.68	22.62	28.12	20.1	15.35
Merged-chr5-23920095-1	chr5	23919995	23920195	+	945.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310471, intron 10 of 10)	intron (NM_001310471, intron 10 of 10)	67862.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.4	0.25	4.56	1.61	20.05	11.6	12.29	19.18	0.79	0.5	3.52	1.88
Merged-chr1-36368814-3	chr1	36368713	36368913	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172652, intron 1 of 20)	CpG	368.0	NM_172652	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	21.4	16.1	10.27	20.91	24.55	26.03	36.21	22.21	28.32	29.62	38.69	19.74
Merged-chr9-58588874-3	chr9	58588770	58588970	+	945.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	6630.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	18.98	11.57	9.13	24.94	29.46	14.11	17.94	24.06	24.39	13.05	27.64	18.48
Merged-chr7-41500570-3	chr7	41500493	41500693	+	945.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	-703.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	19.38	15.09	9.13	11.26	14.32	21.95	14.95	11.19	12.19	14.56	14.57	11.59
Merged-chr2-90522120-3	chr2	90521998	90522198	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-42924.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	21.8	14.34	17.11	8.45	60.55	36.69	35.54	45.76	35.21	37.66	32.66	16.6
Merged-chr12-54519534-3	chr12	54519440	54519640	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126472.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	14.13	14.34	10.84	17.7	26.18	27.59	21.92	31.71	30.29	20.08	34.67	18.8
Merged-chr8-41044089-3	chr8	41043984	41044184	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	L1MB1|LINE|L1	-2153.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	14.13	8.3	34.8	12.87	47.87	43.27	69.76	49.32	37.76	58.24	42.21	26.0
Merged-chr3-84685846-3	chr3	84685744	84685944	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	19652.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	16.96	13.58	9.7	32.98	31.5	28.54	19.93	31.71	24.59	19.08	17.08	15.35
Merged-chr15-84466626-3	chr15	84466537	84466737	+	945.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19540.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	14.94	12.83	25.1	10.86	10.23	18.19	11.29	15.93	22.62	10.54	24.62	15.04
Merged-chr12-32735477-2	chr12	32735360	32735560	+	945.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-84875.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.86	6.79	13.69	5.23	22.09	10.66	15.61	24.34	18.88	9.04	25.63	11.28
Merged-chr4-19604688-2	chr4	19604584	19604784	+	945.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025476, intron 8 of 9)	intron (NM_025476, intron 8 of 9)	29618.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	4.85	7.55	6.85	14.48	13.5	8.47	15.94	21.0	22.23	14.56	33.67	20.36
Merged-chr11-120894165-2	chr11	120894068	120894268	+	945.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027745, intron 10 of 18)	RSINE1|SINE|B4	38704.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	14.54	9.56	17.11	13.27	27.82	21.01	15.28	23.1	8.65	4.52	6.03	5.33
Merged-chr17-46772756-3	chr17	46772635	46772835	+	945.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025966)	promoter-TSS (NM_025966)	100.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	13.73	13.83	14.26	10.05	18.0	23.83	6.98	12.79	16.13	15.06	21.1	8.14
Merged-chr5-115508293-3	chr5	115508131	115508331	+	945.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	1555.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	14.94	7.55	2.28	3.22	7.77	11.29	13.29	2.64	9.64	7.53	7.54	3.45
Merged-chr2-102982994-3	chr2	102982918	102983118	+	945.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81353.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.92	32.7	26.24	10.05	41.73	81.84	54.81	22.07	53.5	50.21	48.24	19.42
Merged-chr10-94478010-3	chr10	94477929	94478129	+	945.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-36828.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	13.33	8.55	23.96	19.31	22.91	17.25	33.88	45.9	21.64	17.07	30.65	17.54
Merged-chr13-30769416-3	chr13	30769316	30769516	+	945.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	20183.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	12.52	15.59	13.69	18.1	27.0	26.03	12.29	10.88	21.44	25.11	37.69	19.42
Merged-chr3-116642100-3	chr3	116641992	116642192	+	945.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 5 of 11)	intron (NM_008246, intron 5 of 11)	20585.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	26.65	9.06	19.97	25.34	21.68	14.74	16.94	29.78	14.16	11.05	24.12	18.17
Merged-chr18-57786301-3	chr18	57786171	57786371	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152225, intron 1 of 2)	intron (NR_152225, intron 1 of 2)	6062.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	8.08	13.33	14.83	16.89	18.0	12.54	15.61	36.03	37.57	36.65	56.28	29.45
Merged-chr3-115766359-3	chr3	115766250	115766450	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51295.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	14.94	15.09	19.97	20.11	19.23	36.06	36.87	47.66	15.74	20.08	29.14	8.77
Merged-chr14-33400181-3	chr14	33400081	33400281	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310452, intron 4 of 10)	MLT1C|LTR|ERVL-MaLR	10843.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	21.0	8.8	22.82	32.18	13.09	28.85	28.57	45.59	16.13	7.03	24.12	23.49
Merged-chr4-155894425-3	chr4	155894329	155894529	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2554.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	20.19	13.33	16.54	10.86	30.68	28.85	10.96	25.74	8.26	12.55	26.63	11.59
Merged-chr17-33524110-3	chr17	33523993	33524193	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172619)	promoter-TSS (NM_172619)	8.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	13.33	20.37	15.97	9.25	17.59	22.89	8.97	16.71	21.64	24.1	20.1	11.28
Merged-chr1-152594918-3	chr1	152594803	152595003	+	945.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	30314.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	11.71	5.28	17.11	17.7	11.05	19.13	14.28	10.09	14.55	15.06	16.08	7.21
Merged-chr6-124360775-3	chr6	124360651	124360851	+	945.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3665.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	21.0	11.57	14.83	20.91	23.32	16.62	5.65	15.2	29.11	17.57	33.16	9.08
Merged-chr16-78198923-3	chr16	78198802	78199002	+	945.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	56552.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	12.92	21.38	21.68	17.29	17.18	22.58	8.64	21.14	16.52	7.53	13.06	18.17
Merged-chr10-88376936-3	chr10	88376847	88377047	+	945.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-2465.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	18.98	7.55	18.83	12.87	15.96	25.09	13.29	17.33	28.91	24.1	15.58	15.98
Merged-chr1-58393716-3	chr1	58393612	58393812	+	945.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025824, intron 1 of 11)	CpG	576.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	9.29	14.59	9.7	12.07	12.68	24.77	12.62	15.28	21.83	12.05	19.6	13.47
Merged-chr14-40933448-3	chr14	40933233	40933433	+	945.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	14876.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	8.08	7.04	12.55	14.08	3.27	7.21	9.97	9.17	5.9	10.04	5.53	9.08
Merged-chr12-76943181-3	chr12	76943011	76943211	+	945.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	B1_Mus2|SINE|Alu	19137.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	9.29	10.06	15.4	4.02	14.32	8.78	13.95	16.54	9.83	10.04	17.59	10.02
Merged-chr14-103059796-3	chr14	103059690	103059890	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9E|LTR|ERVK	-10426.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	27.05	22.64	17.11	11.66	44.59	79.96	29.23	23.16	50.94	50.71	41.71	22.56
Merged-chr12-119377131-3	chr12	119377018	119377218	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66292.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	12.11	19.12	19.4	12.47	20.46	36.69	28.57	30.36	44.84	53.73	47.23	13.16
Merged-chr14-87044482-3	chr14	87044365	87044565	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019670, intron 4 of 27)	intron (NM_019670, intron 4 of 27)	96759.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	10.5	6.04	11.41	12.47	23.32	20.7	9.63	25.68	12.59	7.53	31.66	11.28
Merged-chr15-78587464-3	chr15	78587365	78587565	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5876.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	11.31	10.82	11.41	19.31	31.5	37.94	16.61	16.46	46.42	19.08	42.21	13.78
Merged-chr15-36791814-3	chr15	36791712	36791912	+	945.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253807)	promoter-TSS (NM_001253807)	-880.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	18.98	9.81	17.11	21.72	29.05	22.58	14.95	21.81	35.21	8.54	39.19	18.8
Merged-chr6-134225698-3	chr6	134225604	134225804	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 4 of 8)	intron (NM_001303102, intron 4 of 8)	-170625.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	16.15	43.26	66.74	28.56	8.18	18.81	4.65	12.62	37.96	13.56	24.62	18.8
Merged-chr1-138292277-3	chr1	138292164	138292364	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18526.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	9.69	15.85	27.38	11.66	29.86	45.78	31.56	36.65	23.6	19.58	28.64	13.16
Merged-chr9-25592277-3	chr9	25592175	25592375	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	110678.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	19.38	12.32	11.41	17.7	28.23	20.7	27.57	31.26	37.76	15.57	41.2	28.51
Merged-chr12-84031102-3	chr12	84030986	84031186	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7293.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	15.75	12.83	14.26	11.26	22.91	13.48	14.95	12.59	24.39	18.58	22.11	12.84
Merged-chr17-6272183-1	chr17	6272083	6272283	+	945.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033178, intron 1 of 16)	intron (NM_001033178, intron 1 of 16)	1713.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	27.54	15.57	14.57	16.29
Merged-chr11-107342609-3	chr11	107342517	107342717	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	MTC|LTR|ERVL-MaLR	128103.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	22.21	10.56	21.68	26.14	20.05	10.03	27.57	22.35	15.54	18.08	40.2	20.36
Merged-chr12-85111519-3	chr12	85111416	85111616	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030225, exon 2 of 15)	exon (NM_030225, exon 2 of 15)	683.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	13.73	18.36	15.97	6.44	19.23	18.5	9.63	14.13	24.0	18.58	25.63	8.46
Merged-chr19-11244410-3	chr19	11244319	11244519	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	21732.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	17.77	18.36	14.83	19.71	33.55	33.24	23.25	31.71	27.34	17.57	34.67	26.31
Merged-chr7-88304636-3	chr7	88304535	88304735	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	26550.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	35.13	18.11	19.97	29.76	17.59	23.52	20.59	36.79	18.1	14.06	9.04	8.46
Merged-chr11-54237177-3	chr11	54237064	54237264	+	945.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12735.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	21.8	19.12	23.96	9.25	19.64	25.4	11.96	15.17	30.88	20.08	39.19	26.0
Merged-chr7-46839044-3	chr7	46838886	46839086	+	945.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6818.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	12.92	12.07	7.99	13.67	17.18	17.87	10.3	13.96	10.03	13.56	15.07	11.9
Merged-chr4-49597467-3	chr4	49597279	49597479	+	945.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149725)	promoter-TSS (NR_149725)	91.0	NR_149725	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	7.67	6.54	6.28	10.05	12.68	8.47	9.63	12.17	7.28	9.54	13.57	7.83
Merged-chr5-130248065-3	chr5	130247970	130248170	+	945.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023248, intron 4 of 4)	intron (NM_023248, intron 4 of 4)	7460.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	13.73	15.09	37.65	37.81	24.96	28.85	23.25	35.1	16.33	11.05	26.13	16.92
Merged-chr6-11926273-3	chr6	11926226	11926426	+	945.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362122, intron 1 of 16)	CpG	445.0	NM_001168382	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	16.56	10.82	14.83	6.03	18.82	19.44	15.28	16.91	17.51	20.59	33.16	15.98
Merged-chr11-63925463-3	chr11	63925379	63925579	+	945.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3195.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	20.59	18.86	15.4	30.16	15.55	11.92	4.98	9.76	24.78	15.57	38.19	17.86
Merged-chr10-67729426-3	chr10	67729350	67729550	+	945.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157491.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	12.11	8.05	14.83	12.47	11.86	12.86	4.98	11.3	23.41	20.59	26.63	19.74
Merged-chr11-86745767-3	chr11	86745662	86745862	+	945.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11805.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	13.73	12.83	11.98	15.69	24.14	16.93	24.58	28.46	18.49	20.59	20.1	10.02
Merged-chr13-37325684-3	chr13	37325570	37325770	+	945.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19675.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	11.31	18.36	11.98	10.86	20.05	28.85	9.3	6.7	26.95	32.64	22.61	13.16
Merged-chr13-59840970-3	chr13	59840865	59841065	+	945.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17818.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	25.84	24.15	9.7	22.93	28.23	24.46	9.97	17.97	28.13	25.61	28.64	17.86
Merged-chr2-181930864-3	chr2	181930761	181930961	+	945.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-60365.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	30.28	34.71	35.37	26.95	36.82	27.28	40.86	15.22	19.47	25.11	29.14	58.89
Merged-chr16-4560747-3	chr16	4560658	4560858	+	945.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1038.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	19.38	8.3	1.14	14.48	13.91	13.8	4.98	11.21	18.29	18.58	16.08	9.71
Merged-chr15-8629417-3	chr15	8629313	8629513	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81394.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	7.27	10.56	15.4	17.29	16.36	13.48	16.28	14.36	21.44	16.57	46.23	14.41
Merged-chr11-75564787-3	chr11	75564677	75564877	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	13348.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	17.36	26.41	35.37	20.11	10.64	21.32	8.3	14.44	18.69	24.1	9.55	11.9
Merged-chr11-116274520-1	chr11	116274420	116274620	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	-303.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	8.08	5.28	10.27	5.23	11.86	7.53	3.32	8.36	6.1	4.52	3.01	6.27
Merged-chr6-17778990-3	chr6	17778975	17779175	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	B3A|SINE|B2	29905.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.63	2.26	9.7	6.84	4.5	0.0	4.98	5.33	13.77	11.55	15.07	18.17
Merged-chr11-26331435-1	chr11	26331335	26331535	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55649.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	4.04	6.04	1.14	3.62	13.91	4.08	6.64	14.22	2.75	4.52	14.57	2.82
Merged-chr5-137850461-3	chr5	137850378	137850578	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7571.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	20.19	10.82	18.83	37.81	16.77	21.64	28.9	6.93	14.36	14.06	16.08	12.22
Merged-chr6-71415694-1	chr6	71415594	71415794	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	24943.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.65	3.52	3.42	3.22	5.32	4.39	4.32	9.9	2.36	2.01	8.54	5.01
Merged-chr11-93736836-2	chr11	93736732	93736932	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148934.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.44	4.28	10.27	6.03	9.0	3.14	8.3	18.53	30.29	23.6	48.24	14.72
Merged-chr10-13201905-3	chr10	13201806	13202006	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8769.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	30.69	18.36	18.83	18.9	21.68	23.52	14.62	25.09	22.23	7.03	15.07	14.72
Merged-chr9-94432386-4	chr9	94432330	94432530	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	105651.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	10.09	7.29	13.12	24.13	26.18	22.89	19.27	20.19	18.1	17.57	25.63	14.41
Merged-chr13-37854558-3	chr13	37854414	37854614	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27121.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	15.34	15.09	13.69	11.66	11.45	16.31	9.97	11.69	14.16	12.55	8.04	11.9
Merged-chr10-56547998-3	chr10	56547918	56548118	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116037.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	8.88	1.76	10.27	14.48	12.27	12.86	23.92	22.29	10.03	18.08	33.67	17.23
Merged-chr10-69254613-3	chr10	69254510	69254710	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	MIRb|SINE|MIR	41416.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	26.25	11.07	27.95	40.62	36.82	21.01	25.58	50.92	19.47	12.55	37.18	20.36
Merged-chr11-100624011-3	chr11	100623899	100624099	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028024, intron 1 of 3)	intron (NM_028024, intron 1 of 3)	1044.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	10.9	8.55	36.51	13.67	11.05	18.19	12.29	17.83	30.09	25.61	48.24	41.04
Merged-chr2-145773091-1	chr2	145772991	145773191	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13025.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.25	2.26	7.42	2.41	1.64	2.82	6.64	10.63	1.77	0.0	6.03	4.7
Merged-chr18-32857361-1	chr18	32857261	32857461	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20074.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	8.88	8.3	2.28	12.87	22.09	14.74	14.28	28.01	12.39	9.54	22.11	5.01
Merged-chr3-37502334-1	chr3	37502234	37502434	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82384.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	10.9	21.38	30.8	40.22	0.0	0.31	4.65	3.81	6.69	1.51	0.5	5.95
Merged-chr11-6475212-5	chr11	6475147	6475347	+	944.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011221, exon 1 of 1)	exon (NM_011221, exon 1 of 1)	829.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	8.88	8.8	15.97	12.87	17.18	6.9	8.3	12.9	18.29	30.63	30.65	10.65
Merged-chr19-24987540-3	chr19	24987436	24987636	+	944.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-11993.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	10.9	14.84	27.95	13.67	17.59	16.62	23.58	19.07	28.91	18.08	32.66	11.59
Merged-chr11-116413754-3	chr11	116413651	116413851	+	944.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-719.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	18.98	13.33	11.41	10.86	19.23	22.89	17.94	10.04	31.08	29.62	33.16	16.92
Merged-chrX-160116856-3	chrX	160116744	160116944	+	944.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163085, intron 22 of 28)	intron (NM_001163085, intron 22 of 28)	21586.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	19.79	13.08	14.83	8.85	11.05	15.99	16.61	17.02	18.69	16.57	22.61	12.53
Merged-chr11-64718881-3	chr11	64718772	64718972	+	944.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-260163.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	11.71	10.56	5.7	9.65	21.27	24.46	11.63	15.22	24.19	20.59	36.68	9.08
Merged-chr2-148573366-3	chr2	148573263	148573463	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99252.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	16.96	13.08	4.56	2.41	12.68	17.56	9.63	7.6	20.85	16.57	5.53	5.95
Merged-chr2-6728376-3	chr2	6728279	6728479	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	L1_Mus2|LINE|L1	-6717.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	21.8	6.29	13.69	19.31	20.46	18.81	14.62	9.56	24.59	23.6	26.63	14.41
Merged-chr16-4370260-3	chr16	4370180	4370380	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	50218.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	24.23	10.06	38.79	38.21	42.14	33.55	33.88	50.58	13.96	7.53	17.59	20.36
Merged-chr9-21241499-3	chr9	21241384	21241584	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2152.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	16.96	18.86	9.7	18.9	24.14	24.46	7.64	16.74	21.44	19.08	21.61	14.72
Merged-chr10-13833979-3	chr10	13833938	13834138	+	944.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	34919.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	4.04	4.02	14.26	5.63	4.09	5.96	6.31	9.03	15.74	15.57	16.08	8.77
Merged-chr13-34875951-3	chr13	34875882	34876082	+	944.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013830, intron 1 of 14)	CpG	488.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	20.19	15.09	14.26	15.28	14.32	17.56	9.3	14.78	17.31	14.06	13.06	13.47
Merged-chr17-25240123-3	chr17	25239994	25240194	+	944.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346737)	promoter-TSS (NM_001346737)	22.0	NM_172529	214505.0	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	20.19	19.37	21.11	29.36	23.73	10.35	16.94	16.51	20.26	17.57	9.55	11.9
Merged-chr15-66813075-3	chr15	66812971	66813171	+	944.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18758.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	20.59	17.1	14.83	19.71	15.14	8.47	4.98	9.22	18.49	6.03	24.12	12.84
Merged-chr17-5493469-2	chr17	5493371	5493571	+	944.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146073, exon 1 of 9)	exon (NM_146073, exon 1 of 9)	871.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.27	2.01	18.83	8.04	8.18	8.47	16.61	18.39	13.77	11.55	22.11	15.04
Merged-chr17-67194321-3	chr17	67194243	67194443	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160116.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	36.75	31.44	34.23	21.32	18.0	33.24	18.93	23.38	15.74	11.55	10.55	7.52
Merged-chr9-41072880-3	chr9	41072763	41072963	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	6643.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	13.33	8.55	31.38	12.87	10.64	9.72	4.65	11.47	25.57	23.6	20.1	18.8
Merged-chr6-142752684-3	chr6	142752605	142752805	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3981.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	9.29	15.85	20.54	18.1	28.23	22.58	15.28	48.81	31.47	16.07	36.68	10.96
Merged-chr19-46484306-3	chr19	46484203	46484403	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17345.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	13.73	15.34	7.42	6.84	13.5	19.76	9.97	5.64	22.82	17.57	17.08	10.34
Merged-chr19-16407908-3	chr19	16407808	16408008	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27759.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.85	13.58	31.38	10.86	53.59	69.93	33.22	56.64	78.48	61.76	75.37	30.7
Merged-chr3-104817955-4	chr3	104817869	104818069	+	944.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008619, exon 1 of 20)	exon (NM_008619, exon 1 of 20)	336.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	8.88	11.82	13.69	16.89	10.23	8.78	8.3	8.55	9.24	8.54	13.06	12.22
Merged-chr3-95694595-3	chr3	95694498	95694698	+	944.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6681.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	9.69	13.58	19.4	18.5	23.32	21.64	20.93	28.12	28.13	32.64	43.72	20.68
Merged-chr4-129782041-3	chr4	129781947	129782147	+	944.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38432.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	18.98	19.62	18.25	10.86	20.05	16.93	15.28	19.63	47.8	29.62	34.17	30.39
Merged-chr3-105001552-3	chr3	105001457	105001657	+	944.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163332)	TTS (NM_001163332)	-39848.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	13.33	9.81	17.68	14.88	24.14	9.09	19.93	25.4	14.36	12.55	17.59	10.96
Merged-chr8-11168175-1	chr8	11168075	11168275	+	944.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-144630.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	5.65	3.27	5.7	2.41	16.77	5.96	10.96	10.71	3.93	6.03	4.52	1.25
Merged-chrX-107148862-3	chrX	107148762	107148962	+	944.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122596)	promoter-TSS (NM_001122596)	-65.0	NM_001122596	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	12.11	13.33	7.99	27.35	34.77	37.94	25.58	24.31	29.9	36.15	30.15	16.6
Merged-chr1-93081215-3	chr1	93081060	93081260	+	944.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	1320.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	6.06	10.82	5.13	12.07	9.0	21.64	5.98	3.81	13.77	13.56	16.58	6.27
Merged-chr7-16259187-4	chr7	16259078	16259278	+	944.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007577, exon 2 of 3)	5' UTR (NM_007577, exon 2 of 3)	160.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	46.84	33.7	23.39	25.34	47.05	86.23	48.16	26.38	41.11	52.72	32.66	19.74
Merged-chr10-115332616-1	chr10	115332516	115332716	+	944.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-17025.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	1.21	3.27	11.98	4.02	13.91	5.96	15.94	11.92	3.54	2.51	7.54	6.58
Merged-chr17-87260983-1	chr17	87260883	87261083	+	944.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139295, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	4964.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.06	0.25	4.56	9.65	4.09	3.76	5.98	1.37	19.28	13.05	37.18	18.17
Merged-chr5-143050458-3	chr5	143050382	143050582	+	944.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	PB1D11|SINE|Alu	62538.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	11.71	19.12	16.54	14.88	14.73	12.23	9.63	10.82	28.52	21.09	31.66	12.53
Merged-chr7-80500341-3	chr7	80500218	80500418	+	944.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	34680.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	14.94	25.66	34.8	21.32	22.5	26.34	18.27	20.13	20.46	11.55	14.07	15.04
Merged-chr3-27081497-4	chr3	27081411	27081611	+	944.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72343.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	7.27	16.6	9.7	9.25	12.27	6.9	6.98	21.67	14.16	17.07	21.1	4.7
Merged-chr2-4573503-3	chr2	4573411	4573611	+	944.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 3 of 11)	MTD|LTR|ERVL-MaLR	13757.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	21.8	18.86	39.93	18.1	11.45	5.96	12.62	23.94	21.44	11.05	26.63	11.9
Merged-chr11-79623739-3	chr11	79623649	79623849	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-586.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	29.07	5.53	18.83	7.24	12.68	6.59	4.98	11.92	13.57	4.02	5.53	8.77
Merged-chr18-39517355-3	chr18	39517247	39517447	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30102.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	14.54	15.34	26.81	14.48	11.45	33.87	21.59	19.96	32.45	15.57	25.63	19.11
Merged-chr9-65493088-3	chr9	65493006	65493206	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30405.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	14.94	12.32	15.97	18.5	16.77	11.29	7.64	19.43	17.7	5.02	21.61	11.28
Merged-chr6-146172436-3	chr6	146172316	146172516	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 50 of 56)	intron (NM_019923, intron 50 of 56)	238294.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	15.75	6.54	22.25	11.66	12.27	20.38	21.92	45.28	27.73	17.57	27.13	24.12
Merged-chr9-106356685-3	chr9	106356585	106356785	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11947.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	14.54	12.07	17.11	23.33	13.91	12.86	8.64	21.81	41.11	18.58	31.66	29.13
Merged-chr6-135235829-2	chr6	135235702	135235902	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028982, exon 13 of 13)	3' UTR (NM_028982, exon 13 of 13)	12082.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	12.11	9.56	13.69	15.28	11.45	13.17	15.94	11.52	4.33	6.53	3.52	3.13
Merged-chr1-75478697-3	chr1	75478606	75478806	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	765.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	11.71	2.77	6.85	6.84	13.09	14.74	11.29	17.92	22.23	10.04	22.61	12.53
Merged-chr17-26229958-3	chr17	26229853	26230053	+	944.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	14289.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	10.9	20.88	19.4	16.49	17.18	13.8	11.63	21.98	11.21	12.55	16.08	14.72
Merged-chr3-81039925-3	chr3	81039840	81040040	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3524.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	12.92	5.03	17.11	15.28	16.77	18.5	27.24	24.31	23.6	12.05	16.08	15.66
Merged-chr11-46039566-3	chr11	46039462	46039662	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14940.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	6.46	13.58	17.11	10.05	13.5	13.8	14.62	13.88	35.8	29.62	48.24	15.98
Merged-chr11-118379751-3	chr11	118379553	118379753	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22306.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	6.46	7.29	1.14	2.82	11.86	8.78	6.31	4.82	6.88	4.52	3.52	6.27
Merged-chr19-4099257-3	chr19	4099150	4099350	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-748.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	21.4	28.67	11.41	21.32	23.32	41.08	14.95	19.12	38.35	35.15	28.64	27.88
Merged-chr9-45179468-3	chr9	45179363	45179563	+	944.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145403, intron 6 of 12)	intron (NM_145403, intron 6 of 12)	-16303.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	32.3	39.74	62.75	27.35	40.09	34.18	25.58	36.93	29.5	27.11	14.07	18.48
Merged-chr11-45752397-3	chr11	45752286	45752486	+	944.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55697.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	15.34	7.8	10.27	10.05	16.36	31.36	15.28	11.64	24.78	28.12	36.18	19.11
Merged-chr13-41601215-3	chr13	41601122	41601322	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4994.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	33.11	11.32	27.38	28.15	16.36	13.8	12.62	32.16	16.13	13.56	20.6	13.47
Merged-chr16-38761603-3	chr16	38761513	38761713	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	19354.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	12.52	10.31	14.26	12.47	19.23	15.05	20.59	22.74	28.13	25.11	33.67	25.37
Merged-chr9-55255844-3	chr9	55255755	55255955	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	27770.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	20.19	7.55	14.83	5.23	42.14	54.88	61.78	51.34	26.75	32.13	24.12	18.8
Merged-chr6-125385813-3	chr6	125385721	125385921	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-5317.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	11.71	21.13	33.09	17.29	27.82	49.23	14.62	8.78	42.09	50.71	43.21	27.25
Merged-chr4-138973550-3	chr4	138973469	138973669	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029857, intron 1 of 16)	intron (NM_029857, intron 1 of 16)	664.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	11.71	21.63	11.41	13.27	12.68	32.93	13.62	9.22	24.98	15.57	21.1	10.65
Merged-chr14-87417110-4	chr14	87417000	87417200	+	944.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	CpG	517.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	6.46	5.53	5.7	8.45	12.68	10.98	12.29	11.83	17.51	15.06	22.61	9.71
Merged-chrX-37191186-3	chrX	37191068	37191268	+	944.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019443)	promoter-TSS (NM_019443)	-54.0	NM_153503	69942.0	Mm.307182	NM_153503	ENSMUSG00000036537	Rnf113a1	2810428C21Rik|Rnf113a	ring finger protein 113A1	protein-coding	16.96	11.82	11.98	12.07	14.73	15.99	9.97	18.56	21.64	29.12	16.58	11.59
Merged-chr6-118127345-3	chr6	118127241	118127441	+	944.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	11489.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	22.61	10.31	9.7	15.28	17.59	20.7	15.94	25.12	22.23	19.58	26.13	18.8
Merged-chrX-36108735-3	chrX	36108578	36108778	+	944.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3430.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	12.11	7.04	13.69	8.85	6.55	15.05	11.29	7.96	15.93	12.55	17.59	10.65
Merged-chr2-62681155-3	chr2	62681053	62681253	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145523, intron 3 of 7)	HAL1|LINE|L1	16826.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	22.21	26.16	9.13	11.26	36.41	46.1	28.9	16.79	53.11	43.18	54.77	18.8
Merged-chr3-38433715-3	chr3	38433605	38433805	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51111.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	16.15	13.33	23.96	43.04	11.45	13.48	12.95	18.87	24.78	18.08	22.61	8.14
Merged-chr9-111145714-3	chr9	111145596	111145796	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	27585.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	16.56	11.57	33.09	29.36	19.64	15.99	14.62	26.69	21.05	12.55	20.1	15.04
Merged-chr5-64488185-3	chr5	64488079	64488279	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11171.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	23.42	22.39	9.7	18.1	16.36	34.81	20.93	21.48	31.67	19.08	22.11	13.47
Merged-chr17-3080777-2	chr17	3080676	3080876	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003519, intron 2 of 7)	intron (NR_003519, intron 2 of 7)	3407.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	14.94	10.06	24.53	12.47	32.32	29.16	16.28	37.49	0.39	0.0	0.0	0.63
Merged-chr5-136962764-3	chr5	136962667	136962867	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025562, intron 1 of 4)	intron (NM_025562, intron 1 of 4)	690.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	15.75	12.58	6.28	11.26	14.73	23.83	7.97	12.31	25.37	21.59	25.63	18.17
Merged-chr4-62282668-3	chr4	62282586	62282786	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3743.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	12.92	15.85	19.97	7.64	18.0	24.77	26.91	16.91	38.75	48.7	44.72	20.05
Merged-chr6-83043548-3	chr6	83043446	83043646	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-6165.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	12.11	14.34	11.98	12.07	21.27	18.19	16.94	27.28	23.8	25.11	36.18	24.75
Merged-chr5-23121485-1	chr5	23121385	23121585	+	944.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	Charlie5|DNA|hAT-Charlie	312868.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.0	2.26	0.0	2.41	12.68	8.15	15.28	23.41	5.9	1.0	3.01	2.51
Merged-chr6-130337584-2	chr6	130337486	130337686	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289605)	promoter-TSS (NM_001289605)	40.0	NM_001289605	16634.0	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	14.13	10.82	3.42	4.42	10.64	18.19	10.63	13.54	1.97	0.0	0.0	0.31
Merged-chr17-34883556-3	chr17	34883450	34883650	+	944.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1450.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	15.34	6.04	21.11	14.48	13.5	25.71	8.3	12.31	25.57	30.13	25.12	15.66
Merged-chr1-131698996-3	chr1	131698903	131699103	+	944.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	10308.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	23.82	20.88	31.95	36.2	8.18	7.21	5.31	19.18	31.47	25.11	38.19	26.31
Merged-chr19-34673718-2	chr19	34673618	34673818	+	944.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 5 of 6)	intron (NM_172838, intron 5 of 6)	32829.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	10.5	13.08	19.4	22.52	29.86	17.87	14.62	25.54	0.2	0.5	1.0	2.19
Merged-chr19-46698359-3	chr19	46698258	46698458	+	944.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	8452.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	23.82	19.62	11.41	12.07	35.18	39.51	12.62	20.66	20.65	26.61	21.61	15.04
Merged-chr9-56264482-3	chr9	56264402	56264602	+	944.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103432.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	25.84	14.34	9.13	9.25	21.27	21.95	10.3	15.95	27.14	29.62	22.61	23.49
Merged-chr17-66514541-3	chr17	66514417	66514617	+	944.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	5153.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	29.07	24.15	24.53	10.86	20.46	28.54	10.96	13.91	25.37	23.1	29.65	16.6
Merged-chr8-107271034-3	chr8	107270935	107271135	+	944.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	14871.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	13.33	7.55	16.54	20.91	20.05	34.49	22.26	33.64	26.55	24.6	30.15	11.59
Merged-chr12-3691187-3	chr12	3691105	3691305	+	944.388916	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	RLTR10D2|LTR|ERVK	-115775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.65	4.78	2.28	2.41	13.09	26.97	10.96	6.62	26.16	18.58	33.16	10.96
Merged-chr17-71136821-3	chr17	71136721	71136921	+	944.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-46711.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	14.13	9.06	22.82	16.89	30.68	26.97	20.59	28.01	20.06	28.62	37.18	15.35
Merged-chr2-27676916-3	chr2	27676806	27677006	+	944.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-295.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	17.36	14.84	12.55	8.85	25.36	13.17	9.63	18.28	17.11	13.05	14.57	9.4
Merged-chr6-91582471-1	chr6	91582371	91582571	+	944.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	66436.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.04	3.02	4.56	3.62	9.41	5.64	11.29	14.27	0.79	2.51	2.51	1.88
Merged-chr9-31926032-3	chr9	31925946	31926146	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12761.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	11.31	27.42	23.96	23.73	30.27	26.97	10.96	33.62	26.75	14.56	26.13	15.98
Merged-chr11-120990977-1	chr11	120990877	120991077	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_139059, exon 1 of 9)	exon (NM_139059, exon 1 of 9)	356.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	14.54	13.33	21.68	15.69	11.45	19.13	7.97	11.75	19.67	9.04	12.06	11.28
Merged-chr2-128444330-3	chr2	128444219	128444419	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14968.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	19.79	15.59	14.26	12.87	8.18	14.74	8.64	17.24	42.09	23.6	27.13	21.3
Merged-chr19-44104603-3	chr19	44104506	44104706	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162410, intron 1 of 20)	intron (NM_001162410, intron 1 of 20)	2871.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	25.84	11.82	28.52	23.73	12.27	15.99	4.32	20.41	25.96	11.55	27.64	17.54
Merged-chr15-98872236-3	chr15	98872180	98872380	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1075.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	19.79	13.33	13.12	11.26	21.27	23.83	9.3	11.89	25.96	35.15	33.16	21.62
Merged-chr17-57059586-1	chr17	57059486	57059686	+	944.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025877, exon 1 of 10)	exon (NM_025877, exon 1 of 10)	277.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	2.83	5.53	0.0	2.41	2.86	4.39	3.65	7.18	3.15	10.04	7.03	5.01
Merged-chr3-47885639-1	chr3	47885539	47885739	+	944.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141120.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	4.04	0.5	3.42	6.84	13.5	4.08	21.59	15.0	4.72	5.52	0.0	5.01
Merged-chr3-16181394-3	chr3	16181301	16181501	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1764.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	25.04	13.08	15.97	19.71	40.09	39.51	29.56	45.7	15.74	14.06	16.08	9.08
Merged-chr7-98178916-3	chr7	98178822	98179022	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	-648.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	19.38	28.67	19.4	1.21	11.05	30.42	3.99	2.97	36.58	28.62	31.15	8.14
Merged-chr16-58712401-3	chr16	58712313	58712513	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6311.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	10.5	12.58	21.68	33.38	24.96	19.44	15.94	30.45	23.21	21.09	15.07	14.1
Merged-chr4-3913661-3	chr4	3913562	3913762	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019969, intron 2 of 5)	intron (NM_019969, intron 2 of 5)	24743.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	5.65	12.58	17.11	22.93	20.86	10.66	11.29	20.07	15.74	9.04	11.05	11.59
Merged-chr2-24355554-3	chr2	24355471	24355671	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10200.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	10.09	10.56	17.11	14.08	18.41	21.32	23.58	21.87	15.34	20.59	37.69	17.54
Merged-chr16-44016388-3	chr16	44016286	44016486	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153528)	promoter-TSS (NM_153528)	50.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	22.61	12.83	5.7	19.71	14.32	10.98	26.24	22.37	13.18	18.08	18.09	10.65
Merged-chr14-55590189-3	chr14	55590099	55590299	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029855, intron 2 of 10)	MIR3|SINE|MIR	822.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	19.38	30.69	12.55	10.05	19.64	21.95	13.95	9.7	31.27	25.11	24.12	16.29
Merged-chr19-9986838-1	chr19	9986738	9986938	+	944.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011913, exon 10 of 12)	exon (NM_011913, exon 10 of 12)	4192.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.08	9.56	5.13	0.4	9.82	14.42	6.31	9.95	9.44	15.57	5.53	5.64
Merged-chr17-65608946-3	chr17	65608846	65609046	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	4609.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	12.92	9.31	6.85	6.03	14.32	12.23	18.27	16.15	18.1	16.07	9.55	15.35
Merged-chr3-21938232-3	chr3	21938126	21938326	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138426.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	18.57	10.06	26.81	19.31	25.36	24.77	18.27	43.96	11.01	10.54	24.12	13.47
Merged-chr17-23960544-3	chr17	23960442	23960642	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5269.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	21.4	9.31	15.97	17.7	14.32	18.19	6.31	17.92	18.49	25.11	25.63	12.84
Merged-chr13-78236856-3	chr13	78236750	78236950	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045195)	TTS (NR_045195)	-37977.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	13.33	7.8	15.4	16.49	13.09	10.98	9.63	18.59	23.01	22.59	21.1	22.56
Merged-chrX-167329282-3	chrX	167329179	167329379	+	944.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	MER31B|LTR|ERV1	1292.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	19.79	15.34	15.97	11.66	20.86	9.72	5.65	12.93	26.16	25.61	27.64	9.71
Merged-chr1-160792922-3	chr1	160792781	160792981	+	944.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013862)	promoter-TSS (NM_013862)	57.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	11.71	7.55	11.41	10.05	32.32	39.2	35.54	45.76	21.24	18.08	29.14	12.22
Merged-chr2-124927564-3	chr2	124927475	124927675	+	944.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140552.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	24.23	7.29	23.96	22.93	31.09	30.42	30.89	33.67	29.5	19.08	51.25	27.25
Merged-chr12-85519750-3	chr12	85519644	85519844	+	944.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45854.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	12.11	11.82	21.68	9.65	29.05	20.7	26.24	20.8	22.82	27.11	23.11	10.02
Merged-chr6-134531492-3	chr6	134531386	134531586	+	944.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	35427.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	19.79	20.88	18.83	15.28	15.96	19.76	9.63	15.48	22.03	28.62	22.11	6.89
Merged-chrX-142389497-3	chrX	142389385	142389585	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	1050.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	8.48	7.55	7.99	19.31	18.82	15.05	20.93	22.71	30.49	11.05	29.65	14.1
Merged-chr15-6602633-3	chr15	6602529	6602729	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22782.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	16.56	14.59	35.37	16.89	31.09	29.79	12.95	17.33	19.87	18.08	12.06	10.96
Merged-chr8-75104553-3	chr8	75104468	75104668	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4941.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.48	22.13	4.56	7.64	11.05	10.98	4.65	7.74	11.21	24.6	12.06	8.14
Merged-chr11-101115768-3	chr11	101115671	101115871	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155071, intron 1 of 6)	intron (NR_155071, intron 1 of 6)	4070.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	28.67	7.8	35.94	20.91	30.68	18.81	12.95	15.76	26.36	24.1	26.13	22.56
Merged-chr4-143142045-3	chr4	143141934	143142134	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256380, intron 7 of 7)	intron (NM_001256380, intron 7 of 7)	-5872.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	13.73	28.17	25.1	12.07	16.77	26.97	14.95	28.23	19.08	11.05	24.12	14.72
Merged-chr1-131548724-3	chr1	131548616	131548816	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20813.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	13.73	14.09	13.69	25.74	12.68	25.71	15.61	24.81	14.16	13.05	16.58	12.53
Merged-chr4-14864740-2	chr4	14864623	14864823	+	944.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	504.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	8.08	10.56	2.85	20.91	14.32	10.03	20.93	15.73	20.26	28.62	26.13	20.99
Merged-chr2-181090338-3	chr2	181090244	181090444	+	944.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44945.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	16.96	16.6	18.25	22.52	10.23	9.72	11.63	15.25	18.1	5.52	26.63	18.48
Merged-chr2-124577103-3	chr2	124576985	124577185	+	944.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-33211.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	13.33	15.59	3.99	0.8	15.14	39.82	10.63	3.9	15.14	16.07	13.06	2.51
Merged-chr5-90414804-3	chr5	90414691	90414891	+	944.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46079.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	11.31	11.07	6.28	10.46	19.64	21.01	19.93	21.48	23.21	19.08	27.64	14.41
Merged-chr8-126844698-3	chr8	126844617	126844817	+	944.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4303.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	21.4	14.09	11.98	10.86	39.27	26.97	13.62	25.07	28.13	18.08	21.61	21.3
Merged-chr10-80696128-3	chr10	80696020	80696220	+	944.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5700.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	28.67	10.31	19.97	19.71	18.41	20.07	3.65	11.86	18.49	20.08	23.62	6.58
Merged-chr15-100665145-3	chr15	100665039	100665239	+	944.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	4361.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	28.27	18.36	15.97	9.65	33.96	33.24	12.29	16.01	44.84	50.71	30.65	19.42
Merged-chr12-38864089-3	chr12	38863942	38864142	+	944.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	(TG)n|Simple_repeat|Simple_repeat	80331.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	12.92	19.87	7.99	20.91	11.05	14.42	9.3	16.68	12.0	17.57	28.64	13.47
Merged-chr1-44162611-1	chr1	44162511	44162711	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011729, intron 6 of 14)	intron (NM_011729, intron 6 of 14)	14867.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	1.62	2.26	3.99	12.07	9.0	4.08	4.98	16.79	11.8	4.02	6.53	4.07
Merged-chr1-57850038-1	chr1	57849938	57850138	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	4467.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.81	2.01	0.0	4.42	17.18	21.32	6.64	20.66	4.52	2.51	3.52	0.63
Merged-chr14-60251957-2	chr14	60251818	60252018	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-439.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	19.79	21.38	10.84	12.87	20.86	18.81	19.93	16.07	28.32	25.61	35.68	16.92
Merged-chr9-110888017-3	chr9	110887925	110888125	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7703.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	21.0	22.64	19.97	17.7	26.59	39.51	23.25	23.22	17.51	12.55	17.08	7.52
Merged-chr3-31093359-1	chr3	31093259	31093459	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1699.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.67	14.59	12.55	16.89	13.09	11.92	4.98	9.95	21.24	23.1	25.12	8.77
Merged-chr4-98924229-3	chr4	98924121	98924321	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146144, exon 1 of 9)	5' UTR (NM_146144, exon 1 of 9)	411.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	10.09	8.8	13.12	3.62	9.0	8.15	6.31	9.03	18.69	13.05	20.6	12.22
Merged-chr1-156532212-3	chr1	156532115	156532315	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ETnERV-int|LTR|ERVK	-26572.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	19.38	12.32	7.42	18.9	15.14	22.58	8.3	19.18	25.57	19.58	18.59	10.34
Merged-chr18-49576493-1	chr18	49576393	49576593	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53204.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	6.06	2.26	1.71	8.04	12.27	4.39	11.96	22.32	6.69	4.52	7.54	2.82
Merged-chr17-35590606-2	chr17	35590524	35590724	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23139.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	14.13	7.8	19.4	8.45	13.91	20.38	6.31	7.01	3.15	1.0	1.0	0.63
Merged-chr5-125389323-4	chr5	125389195	125389395	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019639, intron 1 of 1)	CpG	722.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	247.93	220.34	199.66	180.19	238.51	368.45	209.27	203.92	262.38	333.4	351.24	183.26
Merged-chr7-62400342-1	chr7	62400242	62400442	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19797.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	3.23	0.0	0.57	2.41	11.86	4.7	4.32	9.81	1.57	3.01	3.01	3.45
Merged-chr1-89580157-3	chr1	89580052	89580252	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	GC_rich|Low_complexity|Low_complexity	103740.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	14.13	16.1	28.52	13.27	21.27	22.58	12.29	21.53	27.14	15.06	36.68	10.96
Merged-chr6-114358451-1	chr6	114358351	114358551	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-39485.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	4.04	6.04	2.85	1.61	11.86	12.23	8.3	10.43	17.7	9.54	10.55	7.83
Merged-chr13-3373168-3	chr13	3373099	3373299	+	943.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105104.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	19.38	27.42	11.41	21.32	31.09	29.16	34.88	19.18	10.03	20.08	18.09	27.57
Merged-chr14-55763253-3	chr14	55763149	55763349	+	943.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020490)	TTS (NM_020490)	1821.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	17.77	13.83	14.83	19.71	24.96	10.03	11.29	18.5	12.19	14.06	21.1	17.23
Merged-chr7-115018619-3	chr7	115018524	115018724	+	943.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67350.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	20.19	20.63	15.4	22.12	8.18	5.33	4.98	11.38	24.59	22.09	35.68	18.8
Merged-chr18-61211027-2	chr18	61210941	61211141	+	943.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	555.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	16.15	11.32	15.4	6.44	15.55	9.72	6.31	11.78	24.59	21.59	32.16	11.28
Merged-chr12-21111678-2	chr12	21111578	21111778	+	943.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001135192)	promoter-TSS (NM_001135192)	-78.0	NM_001004364	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	9.69	11.82	12.55	14.08	25.77	16.93	20.93	23.05	6.1	4.02	11.05	7.21
Merged-chr13-30714812-3	chr13	30714730	30714930	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34403.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	27.86	10.56	29.09	32.98	27.82	30.73	30.89	45.31	12.98	19.08	33.16	26.31
Merged-chr9-56265678-3	chr9	56265591	56265791	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	Lx7|LINE|L1	-104621.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	21.4	9.31	15.4	12.07	21.27	26.03	21.59	30.93	26.55	25.11	35.17	19.42
Merged-chrX-167227385-3	chrX	167227279	167227479	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18161.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	10.09	12.58	9.7	18.5	22.09	16.62	15.61	19.29	23.21	25.11	23.62	16.29
Merged-chr9-45464418-3	chr9	45464324	45464524	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-33192.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	17.77	22.39	22.82	16.89	9.82	9.72	10.96	16.18	43.47	46.19	57.79	34.46
Merged-chr5-12161407-3	chr5	12161316	12161516	+	943.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-221750.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	13.33	14.84	29.09	20.51	14.32	6.9	5.98	16.54	17.51	7.53	27.13	9.4
Merged-chr10-62206213-3	chr10	62206102	62206302	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	-11975.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	15.34	7.55	22.82	19.31	16.77	14.42	21.59	38.33	26.75	8.03	45.22	15.66
Merged-chr19-47399183-3	chr19	47399086	47399286	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	65225.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	40.38	41.75	43.35	27.35	22.09	59.58	21.92	27.98	29.9	29.12	14.57	9.71
Merged-chr6-58606921-3	chr6	58606830	58607030	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	10258.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	17.36	13.33	29.66	21.32	19.64	10.98	10.96	22.6	13.96	15.57	11.56	10.34
Merged-chr3-8632015-3	chr3	8631910	8632110	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153352, intron 2 of 2)	intron (NR_153352, intron 2 of 2)	3959.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	18.57	11.82	31.38	33.78	26.59	25.09	33.88	42.28	13.57	7.53	33.67	8.77
Merged-chr9-102520416-3	chr9	102520327	102520527	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024291, intron 3 of 10)	intron (NM_024291, intron 3 of 10)	14289.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	11.71	15.09	11.41	3.62	11.86	25.4	16.94	10.21	20.85	21.09	23.62	5.64
Merged-chr1-55529145-4	chr1	55529055	55529255	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123209.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	9.29	8.05	7.99	12.47	13.91	10.98	30.89	24.03	16.13	13.56	17.08	22.24
Merged-chr9-95641345-2	chr9	95641233	95641433	+	943.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	3705.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.44	4.53	11.41	7.64	15.55	15.37	6.64	17.69	21.05	9.04	16.08	17.54
Merged-chr6-53390618-3	chr6	53390516	53390716	+	943.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	103313.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	22.61	11.32	36.51	36.6	13.5	20.07	22.59	30.14	11.8	10.54	13.57	13.16
Merged-chr12-3780836-3	chr12	3780732	3780932	+	943.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26148.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	14.94	24.15	21.11	13.27	17.18	24.77	23.58	29.64	39.14	16.57	24.12	11.28
Merged-chr2-84529339-3	chr2	84529241	84529441	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22468.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	21.0	23.64	25.67	14.48	31.5	30.42	15.28	13.37	21.64	16.57	20.6	13.16
Merged-chr9-20740606-3	chr9	20740521	20740721	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	5675.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	16.56	11.07	12.55	8.45	18.82	13.17	11.29	11.58	24.59	20.59	21.1	15.35
Merged-chr3-152428744-3	chr3	152428635	152428835	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	32051.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	16.15	12.83	17.11	21.32	19.23	16.93	24.58	36.14	23.41	16.57	11.05	11.9
Merged-chr8-66436997-3	chr8	66436905	66437105	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49525.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	17.36	13.08	9.7	16.09	27.41	11.92	12.95	25.85	15.34	21.59	23.11	17.23
Merged-chr3-89266582-3	chr3	89266464	89266664	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026767, exon 1 of 2)	5' UTR (NM_026767, exon 1 of 2)	103.0	NM_026767	68563.0	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	13.73	11.82	11.41	10.86	22.91	24.46	12.62	16.68	24.0	28.62	32.16	19.11
Merged-chr6-108569624-3	chr6	108569530	108569730	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53537.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	17.77	22.39	23.39	14.48	27.82	56.44	25.91	30.45	48.98	19.08	22.11	20.36
Merged-chr1-134719871-3	chr1	134719774	134719974	+	943.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	10574.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	17.77	12.83	20.54	8.85	27.82	15.68	3.99	14.33	24.19	19.58	24.62	11.9
Merged-chr12-73682895-3	chr12	73682793	73682993	+	943.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	98097.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	31.9	19.37	21.68	11.26	31.5	30.73	17.27	17.58	29.31	28.62	33.67	10.34
Merged-chr11-114858840-1	chr11	114858740	114858940	+	943.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	6810.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.75	0.57	0.0	4.5	10.66	1.99	3.06	15.14	6.53	15.58	10.02
Merged-chr4-105207139-3	chr4	105207024	105207224	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	49777.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	15.75	15.09	25.1	13.67	11.45	10.98	14.62	12.9	27.73	22.09	27.13	10.34
Merged-chr17-31073961-1	chr17	31073861	31074061	+	943.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16267.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	3.02	6.85	2.01	3.68	12.23	8.3	10.12	4.33	2.51	2.01	5.01
Merged-chr4-53440858-1	chr4	53440758	53440958	+	943.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133891, intron 1 of 15)	CpG	445.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	7.67	10.31	6.28	3.62	22.09	9.09	4.98	10.6	8.06	12.55	5.53	8.46
Merged-chr16-87737411-1	chr16	87737311	87737511	+	943.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38457.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.63	6.54	7.99	0.0	14.32	13.8	11.63	11.72	5.7	5.02	12.56	5.64
Merged-chr17-71094022-3	chr17	71093921	71094121	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	74464.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	23.42	38.74	21.68	13.27	38.46	56.76	26.91	43.57	53.11	62.76	39.7	23.18
Merged-chr16-78265200-3	chr16	78265099	78265299	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9745.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	26.25	17.86	9.7	10.86	27.82	29.79	25.24	39.22	37.76	41.67	35.68	21.62
Merged-chr8-33929912-3	chr8	33929739	33929939	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	24.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	9.29	16.6	9.13	6.03	20.05	17.87	9.97	18.2	38.35	39.67	42.21	32.58
Merged-chr17-26465214-3	chr17	26465109	26465309	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43263.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	14.13	4.78	9.13	11.66	51.14	40.45	38.53	66.67	80.64	70.29	133.16	74.87
Merged-chr4-118360076-3	chr4	118359970	118360170	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	71.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	21.0	24.15	24.53	33.78	9.0	16.62	20.26	13.46	9.24	8.54	8.04	12.22
Merged-chr1-135634089-2	chr1	135633996	135634196	+	943.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	36320.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	7.27	2.01	5.7	3.22	39.27	35.12	13.62	20.83	20.85	28.62	31.66	8.14
Merged-chr9-14832275-2	chr9	14832182	14832382	+	943.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018736, intron 18 of 19)	intron (NM_018736, intron 18 of 19)	-27928.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	6.06	6.54	10.27	4.83	11.86	10.03	3.99	12.7	27.54	14.06	25.63	12.53
Merged-chr1-177261030-3	chr1	177260922	177261122	+	943.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12255.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	11.71	32.45	27.95	53.89	35.59	40.76	29.56	38.38	33.24	29.12	19.6	15.66
Merged-chr1-181257071-4	chr1	181256986	181257186	+	943.642822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45108.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	17.36	16.85	10.27	12.47	10.64	11.29	12.95	18.53	12.19	5.02	23.62	18.48
Merged-chr17-84293369-3	chr17	84293284	84293484	+	943.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-105437.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	10.5	11.07	22.82	26.14	18.41	17.25	17.27	29.1	18.69	6.03	30.65	13.16
Merged-chr11-19979518-3	chr11	19979411	19979611	+	943.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	55069.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	13.33	19.37	11.41	9.65	26.18	39.51	28.9	25.01	27.14	33.14	39.7	7.21
Merged-chr2-164857557-5	chr2	164857430	164857630	+	943.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011125, intron 1 of 15)	CpG-8831	178.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	13.33	17.36	18.83	14.48	13.5	13.17	22.26	19.35	22.23	24.1	21.61	14.72
Merged-chr4-43047414-3	chr4	43047305	43047505	+	943.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1185.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	10.09	19.87	13.69	15.69	18.82	22.58	5.65	12.22	20.85	17.07	20.6	12.53
Merged-chr13-58443943-3	chr13	58443835	58444035	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40592.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	12.11	12.83	6.85	17.7	12.27	16.93	13.95	17.8	20.85	14.56	22.11	5.01
Merged-chr14-54651246-3	chr14	54651123	54651323	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038053, exon 2 of 6)	non-coding (NR_038053, exon 2 of 6)	712.0	NR_038053	75913.0	Mm.474799	NR_038053		4930579G18Rik	-	RIKEN cDNA 4930579G18 gene	ncRNA	12.92	9.31	7.42	10.86	6.95	18.81	5.65	16.01	17.51	17.57	24.12	4.07
Merged-chr7-80143520-3	chr7	80143424	80143624	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28174.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	16.96	18.11	25.1	22.12	22.91	12.23	15.28	25.49	18.1	16.07	11.56	14.41
Merged-chr19-58107043-3	chr19	58106953	58107153	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	MIRc|SINE|MIR	55886.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	13.73	17.1	22.82	28.56	24.96	9.72	15.61	27.98	24.0	13.05	32.66	22.56
Merged-chr1-36922273-3	chr1	36922184	36922384	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	17243.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	26.25	14.59	11.41	15.69	22.91	23.52	7.31	14.5	17.31	12.55	17.08	11.28
Merged-chr19-46528835-4	chr19	46528701	46528901	+	943.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27153.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	11.31	7.29	18.25	8.45	20.46	19.44	15.61	20.33	11.6	19.58	19.6	9.71
Merged-chr2-11212176-3	chr2	11212072	11212272	+	943.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	39790.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	13.73	12.32	15.97	10.05	11.05	23.52	15.28	13.23	28.32	34.14	24.62	17.86
Merged-chr3-98084068-4	chr3	98083908	98084108	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	70470.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	13.73	3.77	12.55	20.11	16.36	14.11	31.89	43.37	8.85	9.54	20.1	12.53
Merged-chr11-51999977-3	chr11	51999845	52000045	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	521.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	17.36	10.56	15.97	10.86	9.41	6.59	14.62	14.8	16.52	14.56	19.09	11.9
Merged-chr9-74952241-3	chr9	74952140	74952340	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	-640.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	21.4	14.09	12.55	11.26	37.23	28.85	24.25	40.49	73.17	71.3	95.47	44.48
Merged-chr7-75610671-2	chr7	75610593	75610793	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	155159.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	8.88	10.31	5.7	3.62	6.55	11.6	9.3	7.04	5.51	8.54	7.54	3.76
Merged-chr7-19920594-3	chr7	19920505	19920705	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027514, intron 1 of 7)	intron (NM_027514, intron 1 of 7)	538.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	11.31	22.89	25.1	23.33	18.82	36.06	14.28	21.31	30.68	32.13	31.15	22.87
Merged-chr7-19832035-3	chr7	19831936	19832136	+	943.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9281.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	18.57	9.31	9.7	13.27	21.27	31.67	27.24	29.55	23.41	20.59	21.61	19.11
Merged-chr14-52014880-3	chr14	52014775	52014975	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253695)	promoter-TSS (NM_001253695)	-317.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	15.75	13.58	5.7	17.7	20.05	10.98	14.62	22.12	17.51	21.09	17.59	8.14
Merged-chr8-120119149-3	chr8	120119063	120119263	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5011.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	20.19	6.04	24.53	11.66	34.36	31.67	28.57	42.39	23.21	7.53	20.1	11.28
Merged-chr10-8768873-3	chr10	8768775	8768975	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	117195.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	25.84	34.21	13.12	17.7	51.14	74.63	45.51	16.82	19.87	33.14	35.68	11.28
Merged-chr5-130075068-3	chr5	130074938	130075138	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	1712.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	11.31	17.61	14.83	12.07	20.86	22.26	9.63	18.84	16.52	19.08	18.09	19.11
Merged-chr5-122398030-3	chr5	122397943	122398143	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	6165.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	8.88	18.36	19.4	23.73	20.86	17.56	10.63	18.7	31.27	14.56	17.08	6.58
Merged-chr11-31713356-3	chr11	31713265	31713465	+	943.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41503.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	23.42	9.31	22.25	41.43	21.68	17.25	17.94	39.67	24.98	18.58	31.66	11.9
Merged-chr17-17601112-3	chr17	17601005	17601205	+	943.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	B1F|SINE|Alu	23384.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	11.71	12.58	7.42	17.7	31.09	18.5	12.95	21.45	35.01	16.07	47.23	14.1
Merged-chr4-126201884-3	chr4	126201783	126201983	+	943.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	827.0	NM_001356455	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	16.15	11.07	15.97	10.46	11.45	18.5	12.95	16.57	49.37	32.64	25.63	21.3
Merged-chr3-8685418-3	chr3	8685364	8685564	+	943.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18426.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	10.5	8.55	8.56	14.08	13.5	22.58	12.95	26.07	16.52	15.06	17.59	7.21
Merged-chr16-76765270-3	chr16	76765188	76765388	+	943.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	13804.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	22.21	30.43	25.1	12.07	23.73	66.16	64.77	38.05	60.78	50.21	46.73	13.47
Merged-chr15-25302826-2	chr15	25302725	25302925	+	943.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110939.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	14.94	10.06	6.85	16.09	12.68	15.99	12.95	29.38	23.41	21.59	29.65	17.54
Merged-chr17-33758132-2	chr17	33758032	33758232	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008997, intron 1 of 4)	intron (NM_008997, intron 1 of 4)	2354.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	7.27	5.03	5.7	11.26	13.09	23.83	8.64	10.65	26.36	29.62	25.63	7.21
Merged-chr6-108784328-2	chr6	108784215	108784415	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1256.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	10.09	5.79	4.56	2.41	11.45	16.62	10.63	13.96	9.44	26.11	22.11	13.78
Merged-chr15-35515704-2	chr15	35515599	35515799	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	144153.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	3.63	2.01	1.71	2.01	27.41	26.65	35.87	32.97	16.92	6.53	23.11	11.28
Merged-chr3-26932631-2	chr3	26932546	26932746	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029150, intron 10 of 10)	intron (NM_029150, intron 10 of 10)	221208.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	2.42	2.52	14.83	6.84	10.23	2.82	8.3	10.01	16.33	7.03	23.11	15.66
Merged-chr2-144550791-1	chr2	144550691	144550891	+	943.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015754)	promoter-TSS (NM_015754)	68.0	NM_015754	26450.0	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9, serine hydrolase	protein-coding	3.23	6.04	7.42	7.64	3.68	9.41	13.95	14.44	7.47	7.03	14.07	4.7
Merged-chr8-88279770-3	chr8	88279662	88279862	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	-3230.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.85	9.81	13.69	18.5	25.77	29.79	32.55	40.12	22.03	29.12	30.65	25.06
Merged-chr14-120303148-1	chr14	120303048	120303248	+	943.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-3304.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.23	1.76	13.69	4.02	6.55	5.02	7.97	9.7	7.47	6.03	9.04	4.39
Merged-chr7-110097317-3	chr7	110097152	110097352	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24807.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	10.09	3.27	15.97	15.28	18.0	8.47	11.63	17.92	10.82	2.51	14.07	7.52
Merged-chr8-85072128-3	chr8	85072051	85072251	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039514, intron 1 of 8)	intron (NM_001039514, intron 1 of 8)	394.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	11.31	11.07	6.28	14.88	14.73	12.23	4.98	14.55	16.52	23.1	27.13	13.47
Merged-chr6-86654710-3	chr6	86654613	86654813	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	14446.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	11.71	18.36	26.81	16.09	13.91	20.38	16.94	23.02	11.6	13.56	17.08	8.77
Merged-chrX-20938503-3	chrX	20938396	20938596	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007922, intron 2 of 5)	MTD|LTR|ERVL-MaLR	-6941.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	18.57	11.57	27.38	12.07	15.96	24.15	10.63	23.07	32.85	16.07	18.59	12.84
Merged-chr15-79436760-3	chr15	79436648	79436848	+	943.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	5070.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	18.17	10.82	27.95	30.16	23.32	8.78	20.26	18.95	15.14	25.11	14.57	12.84
Merged-chr15-101133255-3	chr15	101133131	101133331	+	943.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	4709.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	8.48	17.61	17.68	15.28	12.68	8.47	10.63	7.49	12.0	11.05	16.08	13.47
Merged-chr5-107869863-3	chr5	107869765	107869965	+	943.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	intron (NM_007964, intron 1 of 17)	5242.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	17.36	11.07	12.55	16.49	6.55	14.42	16.28	24.5	18.88	13.05	21.61	12.22
Merged-chrX-121429283-1	chrX	121429183	121429383	+	943.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	968102.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	3.23	2.26	1.14	4.02	7.77	17.87	22.59	29.72	1.18	0.0	0.0	0.0
Merged-chr2-114137774-2	chr2	114137680	114137880	+	943.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290788, intron 16 of 33)	L1M3|LINE|L1	12790.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	4.85	15.09	21.68	14.48	13.91	8.78	7.97	18.08	0.0	0.5	1.0	0.63
Merged-chr4-136898044-4	chr4	136898023	136898223	+	943.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007572, intron 1 of 2)	(CCCTAA)n|Simple_repeat|Simple_repeat	721.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	12.52	17.36	11.41	10.05	14.73	21.95	15.28	10.29	19.87	28.12	15.07	11.9
Merged-chr5-65990253-3	chr5	65990149	65990349	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027961, intron 5 of 6)	intron (NR_027961, intron 5 of 6)	14036.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	9.69	14.59	14.26	11.26	29.05	45.47	17.27	25.65	30.88	28.62	33.16	21.93
Merged-chr19-5705122-3	chr19	5705009	5705209	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010609, intron 1 of 2)	intron (NM_010609, intron 1 of 2)	638.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	14.94	11.82	14.26	12.47	15.14	15.05	14.95	12.59	13.37	18.58	21.61	8.77
Merged-chr7-73596599-3	chr7	73596489	73596689	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-38194.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	15.34	17.36	3.42	12.47	16.77	23.52	10.3	12.53	24.19	15.06	26.13	9.4
Merged-chr7-116336376-3	chr7	116336278	116336478	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011083)	TTS (NM_011083)	-2188.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	15.34	20.12	30.8	7.64	11.86	20.07	8.97	12.59	23.8	27.62	23.11	19.42
Merged-chr16-21319072-3	chr16	21318959	21319159	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14297.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	27.46	9.56	10.84	15.69	18.0	26.97	8.97	15.11	24.39	21.09	14.57	12.84
Merged-chr10-68192978-1	chr10	68192878	68193078	+	943.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	85748.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.65	4.78	3.99	8.04	19.23	10.98	5.98	15.2	1.97	1.0	4.02	1.25
Merged-chr12-112873735-3	chr12	112873611	112873811	+	943.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12795.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	22.21	9.56	9.13	16.89	12.27	14.11	12.62	15.14	21.24	13.05	33.67	12.53
Merged-chr9-113026815-3	chr9	113026739	113026939	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	560313.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	15.75	7.8	15.97	21.72	20.86	18.81	25.24	41.47	28.13	18.08	13.06	20.99
Merged-chr17-31583640-1	chr17	31583540	31583740	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027493, intron 2 of 11)	intron (NR_027493, intron 2 of 11)	18867.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	11.71	12.32	18.83	13.27	9.0	4.7	5.31	2.75	1.77	1.0	1.0	2.51
Merged-chr4-145242926-3	chr4	145242850	145243050	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3920.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	10.9	7.29	10.27	8.04	17.18	14.42	13.29	12.06	13.57	12.05	21.61	18.48
Merged-chr3-107931844-3	chr3	107931758	107931958	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-41.0	NM_026672	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	10.9	16.35	10.84	28.15	15.96	20.7	16.61	29.13	18.69	18.08	44.72	13.16
Merged-chr1-62725105-2	chr1	62724973	62725173	+	943.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21756.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	12.52	17.36	14.26	10.86	15.55	19.44	14.95	7.04	4.33	9.54	9.04	3.13
Merged-chr2-80168308-2	chr2	80168204	80168404	+	943.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38646.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.4	4.02	6.85	4.83	7.77	7.21	18.93	22.12	27.34	18.58	33.67	23.49
Merged-chr7-98341583-3	chr7	98341484	98341684	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19704.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	12.92	10.56	18.25	11.26	19.64	20.07	7.64	10.71	25.96	24.6	26.13	17.23
Merged-chr13-5845339-3	chr13	5845244	5845444	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12748.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	17.77	31.44	11.41	18.9	29.05	29.16	29.9	27.17	27.93	34.65	30.15	26.0
Merged-chr16-59560132-3	chr16	59560043	59560243	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4391.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	8.08	8.55	20.54	29.36	24.14	19.44	18.93	31.26	43.27	32.64	53.26	27.88
Merged-chr4-95784338-3	chr4	95784228	95784428	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 8 of 10)	L2|LINE|L2	182707.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	14.13	9.06	22.82	18.5	15.14	13.8	15.94	35.05	24.59	11.55	31.15	15.66
Merged-chr1-162574763-3	chr1	162574649	162574849	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356527, intron 2 of 7)	intron (NM_001356527, intron 2 of 7)	3921.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	23.82	12.07	23.39	8.04	35.59	37.94	16.28	42.2	31.67	19.08	36.18	25.37
Merged-chr1-170898603-3	chr1	170898501	170898701	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13061.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	13.33	10.82	10.84	16.09	40.91	38.88	42.85	58.07	30.88	28.12	45.73	30.07
Merged-chr2-30718464-3	chr2	30718349	30718549	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	21.0	22.89	9.13	18.5	35.18	32.93	18.93	30.34	21.05	12.55	21.1	8.77
Merged-chr1-171111348-5	chr1	171111241	171111441	+	943.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10320.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	10.5	23.64	8.56	21.32	12.27	19.13	19.6	12.03	22.42	34.14	19.09	14.72
Merged-chr17-67352555-3	chr17	67352367	67352567	+	943.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1992.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.23	8.3	14.83	4.02	2.45	9.41	8.97	4.07	15.14	19.08	12.56	7.52
Merged-chr9-65538398-3	chr9	65538316	65538516	+	943.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41671.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	21.8	18.36	30.8	14.48	11.05	14.74	24.91	23.61	35.01	16.07	38.19	17.23
Merged-chr12-40218580-3	chr12	40218485	40218685	+	943.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	4226.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	22.61	16.1	21.11	14.48	31.09	44.21	13.95	13.35	24.59	20.08	14.57	6.58
Merged-chr2-71843509-3	chr2	71843414	71843614	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008397, intron 20 of 25)	intron (NM_008397, intron 20 of 25)	-29710.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	10.9	12.07	23.96	17.7	26.59	19.44	23.92	41.69	61.76	60.75	97.98	63.91
Merged-chr12-41096247-1	chr12	41096147	41096347	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	72157.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.06	7.04	6.85	7.64	4.09	7.84	5.65	20.78	8.85	4.52	18.09	5.33
Merged-chr11-8569879-3	chr11	8569752	8569952	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	94683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	12.52	9.56	23.39	14.48	20.46	21.32	15.94	23.69	15.14	12.55	27.13	12.53
Merged-chr1-52765383-3	chr1	52765300	52765500	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38042.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	10.09	4.78	12.55	16.09	50.32	33.55	58.79	51.11	19.08	18.58	38.69	21.62
Merged-chr6-129423858-3	chr6	129423774	129423974	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172732, exon 6 of 6)	3' UTR (NM_172732, exon 6 of 6)	15012.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	12.11	9.06	9.13	2.41	13.09	19.13	6.64	15.06	21.05	21.09	18.59	17.86
Merged-chr12-59129797-1	chr12	59129697	59129897	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	49.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	5.25	9.06	7.42	3.62	13.09	16.62	5.31	10.57	6.1	3.51	8.54	12.84
Merged-chr3-148248822-3	chr3	148248741	148248941	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	705794.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	9.29	15.59	30.23	20.51	14.73	15.68	27.57	35.55	16.92	10.04	32.16	9.4
Merged-chr4-150472721-2	chr4	150472623	150472823	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179451.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.86	14.84	19.4	16.49	17.18	15.05	9.3	23.24	11.6	5.02	10.05	10.34
Merged-chr2-174674159-3	chr2	174674071	174674271	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30637.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	21.8	9.56	23.96	12.07	16.77	19.13	9.63	19.54	23.8	25.11	27.13	17.86
Merged-chr18-33816705-1	chr18	33816605	33816805	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013512, intron 18 of 23)	intron (NM_013512, intron 18 of 23)	21813.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.81	1.76	4.56	2.82	2.45	3.76	7.31	4.21	4.33	4.02	9.04	5.01
Merged-chrX-164436879-1	chrX	164436779	164436979	+	943.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313737)	promoter-TSS (NM_001313737)	-115.0	NM_026853	68854.0	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.0	3.02	4.56	0.0	1.64	1.88	2.66	3.73	16.92	21.59	12.06	3.76
Merged-chr8-124922694-3	chr8	124922590	124922790	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	URR1A|DNA|hAT-Charlie	24804.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	55.72	59.61	62.18	46.25	61.37	71.81	57.47	49.74	19.67	16.57	12.06	11.28
Merged-chr12-103347165-1	chr12	103347065	103347265	+	943.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8836.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	16.56	12.32	23.39	20.11	22.09	5.64	10.96	20.58	23.21	16.07	23.62	6.27
Merged-chr10-4388643-1	chr10	4388543	4388743	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033466)	promoter-TSS (NM_001033466)	-535.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	6.46	3.77	2.28	10.46	9.0	6.9	7.64	7.18	6.1	2.51	14.57	19.11
Merged-chrX-73962957-3	chrX	73962855	73963055	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008224, intron 1 of 25)	MIR3|SINE|MIR	3402.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	11.71	13.83	9.7	18.9	15.55	11.92	11.29	17.3	25.18	17.07	26.63	12.84
Merged-chr11-94212097-1	chr11	94211997	94212197	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009427, intron 1 of 1)	intron (NM_009427, intron 1 of 1)	643.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	9.29	9.06	4.56	3.62	18.0	12.54	9.63	10.09	12.19	16.07	18.09	12.84
Merged-chr15-73512486-3	chr15	73512401	73512601	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081066)	promoter-TSS (NM_001081066)	-59.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	7.27	8.3	13.69	5.63	15.55	15.68	4.98	11.55	13.18	10.54	17.59	9.71
Merged-chr14-47649787-3	chr14	47649709	47649909	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347528, intron 1 of 37)	CpG	498.0	NM_001347524	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	15.34	10.82	14.83	25.74	14.32	17.25	18.27	22.18	12.0	11.55	16.08	9.08
Merged-chr12-73201825-3	chr12	73201721	73201921	+	942.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	78104.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	12.52	9.06	15.4	16.09	13.09	13.8	18.27	30.48	16.72	12.05	35.17	14.41
Merged-chr6-108696065-3	chr6	108695959	108696159	+	942.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35125.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	12.92	16.1	26.24	20.51	9.82	20.7	10.96	28.15	19.87	9.04	18.09	9.08
Merged-chr4-109257790-3	chr4	109257685	109257885	+	942.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22153.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	6.46	15.09	18.25	17.29	16.77	23.2	15.28	29.94	13.96	19.08	26.13	24.43
Merged-chr11-26961752-3	chr11	26961661	26961861	+	942.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176653.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	14.54	12.07	11.98	21.72	13.09	12.54	15.94	12.7	18.1	18.08	17.08	11.28
Merged-chr15-85336553-4	chr15	85336507	85336707	+	942.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016843, intron 1 of 11)	CpG	226.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	15.34	16.35	14.83	12.07	22.09	14.74	22.26	22.65	30.29	37.16	32.66	23.81
Merged-chr2-18608979-3	chr2	18608872	18609072	+	942.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63490.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	13.33	3.27	15.97	14.08	16.36	15.37	10.63	13.57	16.52	10.04	24.62	13.47
Merged-chr16-65378454-3	chr16	65378339	65378539	+	942.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142190.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	23.02	11.32	11.98	12.47	15.14	18.5	10.63	19.23	17.11	16.07	38.19	10.34
Merged-chr2-69635206-3	chr2	69635093	69635293	+	942.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12062.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	12.92	14.09	19.4	21.72	13.5	11.92	8.64	20.19	15.93	19.58	26.13	10.34
Merged-chr10-40310405-3	chr10	40310301	40310501	+	942.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8213.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	21.8	22.64	10.27	16.09	13.09	19.76	18.6	20.89	18.88	14.56	19.6	10.34
Merged-chr9-57262500-5	chr9	57262331	57262531	+	942.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028820, exon 1 of 3)	5' UTR (NM_028820, exon 1 of 3)	168.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	25.84	25.4	22.82	21.72	20.86	33.24	18.27	17.38	26.36	25.61	10.55	26.63
Merged-chr17-63370094-3	chr17	63369993	63370193	+	942.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-57120.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	14.54	28.67	17.11	10.05	15.55	29.16	18.93	21.36	28.52	18.08	31.66	12.22
Merged-chr17-42449280-2	chr17	42449171	42449371	+	942.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	132671.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	6.46	15.85	17.11	16.09	5.73	0.0	2.66	1.88	63.92	55.23	87.43	40.1
Merged-chr16-21719910-3	chr16	21719820	21720020	+	942.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25255.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	15.34	16.85	14.83	11.26	21.68	22.26	11.63	21.03	22.62	27.62	32.66	16.29
Merged-chr12-26439484-3	chr12	26439345	26439545	+	942.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17007.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	73.49	107.15	74.73	66.36	59.73	135.15	49.16	65.55	18.1	20.59	15.58	8.46
Merged-chr2-4617022-3	chr2	4616923	4617123	+	942.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35112.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	12.52	11.07	6.85	5.23	6.55	13.48	18.6	11.16	16.13	28.62	12.06	7.83
Merged-chr16-30974733-3	chr16	30974643	30974843	+	942.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	L1MA9|LINE|L1	106689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	7.27	10.82	18.83	20.51	16.77	15.37	5.98	17.1	17.11	27.62	21.61	10.96
Merged-chr5-134184278-5	chr5	134184155	134184355	+	942.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053266, exon 1 of 16)	5' UTR (NM_053266, exon 1 of 16)	217.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	12.52	22.13	15.4	24.94	31.09	10.66	10.63	8.75	19.87	28.62	17.59	7.83
Merged-chr19-40305612-1	chr19	40305512	40305712	+	942.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034962, intron 20 of 22)	MIR3|SINE|MIR	-33996.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	4.85	1.01	8.56	10.05	27.0	8.15	22.59	27.0	7.67	8.03	5.02	3.45
Merged-chr3-89909260-3	chr3	89909152	89909352	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3944.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	21.0	19.62	11.98	14.88	47.05	38.26	23.25	30.64	15.14	22.59	19.6	10.65
Merged-chr9-61310149-3	chr9	61310034	61310234	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16325.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	12.11	6.04	23.39	12.07	13.91	18.19	15.28	17.72	17.11	14.06	17.59	14.72
Merged-chr9-98979905-3	chr9	98979813	98980013	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6460.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	18.17	16.1	7.99	11.66	20.86	14.74	14.95	21.28	27.54	6.53	34.67	14.1
Merged-chr2-52455800-3	chr2	52455751	52455951	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-30977.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	9.69	8.55	10.84	8.85	22.09	17.25	20.93	17.22	12.19	10.54	25.12	11.9
Merged-chr10-82867077-3	chr10	82866982	82867182	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025499, exon 1 of 1)	exon (NM_025499, exon 1 of 1)	456.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	15.34	9.06	13.69	18.9	17.18	18.5	28.9	20.22	23.41	23.1	30.15	13.78
Merged-chr5-74618695-3	chr5	74618585	74618785	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359074, intron 5 of 10)	intron (NM_001359074, intron 5 of 10)	59187.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	13.33	27.92	13.69	2.41	20.86	42.02	18.6	8.02	28.72	30.63	12.56	5.01
Merged-chr1-82796300-3	chr1	82796185	82796385	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27829.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	10.09	14.84	11.98	16.89	25.77	20.38	18.6	19.77	21.44	22.59	39.19	24.43
Merged-chr10-95840122-3	chr10	95840016	95840216	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-100547.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	12.92	8.05	22.82	21.32	32.32	18.5	46.17	58.26	18.29	27.62	29.65	20.99
Merged-chr6-124857188-3	chr6	124857099	124857299	+	942.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013534, exon 1 of 15)	exon (NM_013534, exon 1 of 15)	488.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	15.75	14.34	17.68	14.08	19.64	19.76	7.97	15.95	24.0	21.09	26.13	13.47
Merged-chr2-109230995-2	chr2	109230877	109231077	+	942.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	47313.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	4.85	4.53	6.85	0.8	5.32	11.92	4.65	10.63	12.19	3.01	16.58	4.07
Merged-chr11-23682938-3	chr11	23682838	23683038	+	942.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	16962.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	12.92	7.55	14.26	18.1	26.18	13.48	38.2	40.65	25.96	36.65	29.14	20.99
Merged-chr4-155492458-3	chr4	155492279	155492479	+	942.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160017, intron 1 of 10)	CpG	1018.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	7.67	20.63	6.85	15.28	11.86	8.47	17.94	13.71	18.29	19.58	16.08	22.24
Merged-chr14-31181847-3	chr14	31181739	31181939	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022656, intron 13 of 20)	intron (NM_022656, intron 13 of 20)	-13198.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	12.11	10.82	18.83	24.94	24.55	22.58	69.09	40.07	11.6	16.57	26.63	17.23
Merged-chr4-130922135-3	chr4	130922005	130922205	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8771.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	13.33	7.8	23.39	18.5	17.59	19.44	24.91	31.09	26.16	23.6	42.71	18.17
Merged-chr1-55807152-3	chr1	55807030	55807230	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124111.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	8.48	7.29	11.41	20.11	17.59	12.23	15.94	20.58	27.34	15.06	27.64	12.53
Merged-chr4-109657335-3	chr4	109657310	109657510	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7962.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	21.4	7.04	14.83	13.67	10.64	11.92	6.31	13.12	19.28	18.58	14.07	9.71
Merged-chr5-143048396-3	chr5	143048287	143048487	+	942.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	64633.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	15.34	9.31	27.38	33.78	24.14	18.5	22.92	28.49	15.14	16.57	28.14	7.83
Merged-chr2-78995326-3	chr2	78995222	78995422	+	942.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125644.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	8.88	12.32	22.82	22.12	27.0	19.76	32.22	30.81	30.88	14.06	32.16	16.29
Merged-chr17-34031135-3	chr17	34031067	34031267	+	942.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	523.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	10.09	13.08	3.42	7.64	12.68	18.19	20.93	9.28	23.01	21.09	13.57	10.96
Merged-chr11-55147607-3	chr11	55147485	55147685	+	942.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	4121.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	11.31	7.55	15.4	8.85	19.23	24.77	13.29	15.59	18.49	19.08	18.09	11.59
Merged-chr8-10848348-3	chr8	10848253	10848453	+	942.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34101.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	24.63	14.09	25.1	29.76	26.59	31.04	22.59	33.03	18.49	5.52	11.56	13.78
Merged-chr5-30014747-3	chr5	30014650	30014850	+	942.6555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314054, intron 2 of 4)	intron (NM_001314054, intron 2 of 4)	1636.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	13.73	23.64	17.11	20.11	22.5	16.93	7.97	16.04	27.54	18.58	29.65	10.96
Merged-chr11-3148653-2	chr11	3148552	3148752	+	942.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	24631.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	7.27	18.61	7.99	13.27	16.77	4.08	16.61	10.65	0.0	0.0	0.0	0.94
Merged-chrX-159650816-3	chrX	159650710	159650910	+	942.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	23538.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	25.84	18.11	21.68	6.44	29.46	40.76	40.86	45.81	27.54	14.56	21.61	3.13
Merged-chr19-10739003-3	chr19	10738900	10739100	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007650)	promoter-TSS (NM_007650)	-26.0	NM_007650	12507.0	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	25.04	33.2	19.97	10.05	27.82	32.3	12.95	22.49	23.8	18.08	28.64	13.78
Merged-chr8-123855277-3	chr8	123855163	123855363	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028536, intron 2 of 3)	HAL1|LINE|L1	4946.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	13.33	22.64	9.7	19.71	22.09	29.48	13.62	24.03	22.23	11.05	18.59	18.17
Merged-chr4-155505207-3	chr4	155505114	155505314	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	13853.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	19.79	16.6	20.54	16.09	18.0	15.99	5.98	16.71	27.73	13.56	22.61	10.65
Merged-chr15-77931822-3	chr15	77931728	77931928	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2834.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	17.36	11.32	26.81	32.98	12.27	21.01	9.97	23.36	15.93	14.56	31.66	23.49
Merged-chr6-116735523-3	chr6	116735438	116735638	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-18780.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	11.71	13.58	14.83	9.65	14.32	18.5	14.95	11.33	25.18	17.57	10.55	4.7
Merged-chr9-86579816-3	chr9	86579733	86579933	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7780.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	12.52	10.82	10.27	21.72	21.27	15.68	26.57	28.37	12.19	5.02	34.67	12.84
Merged-chr1-191092561-4	chr1	191092414	191092614	+	942.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5900.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.65	11.07	6.85	14.88	9.82	9.09	18.93	11.19	8.26	9.54	14.57	10.65
Merged-chr14-55874107-3	chr14	55874009	55874209	+	942.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001040072, exon 8 of 8)	3' UTR (NM_001040072, exon 8 of 8)	10147.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	14.94	12.32	19.97	9.25	14.73	20.38	14.28	17.1	17.31	6.03	14.57	15.04
Merged-chr19-21495966-1	chr19	21495866	21496066	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23305.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.42	3.02	1.14	4.42	7.77	5.33	28.9	11.61	5.7	3.01	15.58	5.01
Merged-chr13-59003428-2	chr13	59003315	59003515	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195718.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.63	3.52	5.7	8.04	17.59	2.2	8.64	13.77	9.05	5.02	14.07	9.71
Merged-chr11-22437690-2	chr11	22437588	22437788	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74595.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	6.06	4.78	4.56	4.83	61.37	56.44	27.9	57.81	15.54	19.58	17.08	7.21
Merged-chr2-22861413-3	chr2	22861326	22861526	+	942.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-34096.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	20.19	8.8	17.11	16.09	18.0	16.62	7.31	21.36	19.08	20.59	19.09	12.53
Merged-chr14-10535043-1	chr14	10534943	10535143	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	RMER10A|LTR|ERVL	-81585.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.63	5.03	10.27	8.45	7.77	11.92	3.99	12.14	6.88	23.1	10.55	4.7
Merged-chr1-135617551-2	chr1	135617451	135617651	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19775.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	1.51	1.71	0.0	14.32	17.25	7.97	18.03	14.36	12.55	25.63	16.29
Merged-chr10-10424563-2	chr10	10424441	10424641	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 10 of 36)	MLT2B4|LTR|ERVL	47773.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.46	3.02	9.13	5.23	2.86	11.6	11.63	18.11	21.05	23.1	20.6	6.58
Merged-chr1-95644269-2	chr1	95644183	95644383	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 3 of 3)	MIR3|SINE|MIR	23311.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	2.83	3.52	14.83	8.04	21.68	31.04	9.63	20.22	12.78	15.06	14.57	6.58
Merged-chr19-32224512-3	chr19	32224393	32224593	+	942.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13480.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	13.33	12.07	9.13	2.82	43.77	30.1	8.97	17.61	21.64	16.57	12.06	10.02
Merged-chr13-34089251-3	chr13	34089181	34089381	+	942.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046184, intron 3 of 4)	intron (NR_046184, intron 3 of 4)	-11273.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	7.67	10.82	19.4	15.69	11.05	11.29	16.94	12.5	14.95	12.55	34.17	11.9
Merged-chr1-36307257-2	chr1	36307156	36307356	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-477.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	6.46	3.52	4.56	13.67	7.77	15.05	6.98	15.67	28.13	21.59	11.05	12.84
Merged-chr4-145246332-2	chr4	145246221	145246421	+	942.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	549.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	9.29	11.82	7.42	12.87	11.05	15.05	17.61	13.15	13.96	13.05	18.59	13.16
Merged-chr3-79491858-3	chr3	79491747	79491947	+	942.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 10 of 16)	intron (NM_001162999, intron 10 of 16)	75832.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	26.65	13.58	39.93	38.61	55.64	36.06	60.46	93.48	15.14	17.57	42.71	24.75
Merged-chr15-97787738-5	chr15	97787665	97787865	+	942.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	3400.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	6.86	7.8	1.14	5.63	7.36	11.92	16.94	8.92	12.59	10.54	11.05	6.89
Merged-chr1-135130433-3	chr1	135130354	135130554	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153383, intron 1 of 36)	(A)n|Simple_repeat|Simple_repeat	2121.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	22.21	13.33	10.84	18.1	13.91	26.03	11.96	11.92	23.01	25.61	26.63	10.96
Merged-chr18-38190749-3	chr18	38190642	38190842	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19020.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	11.71	5.28	15.97	5.23	16.36	7.53	12.29	16.21	18.49	24.6	30.65	19.74
Merged-chr1-91187547-3	chr1	91187427	91187627	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168392, intron 1 of 3)	intron (NM_001168392, intron 1 of 3)	7705.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	10.09	13.33	17.68	26.55	24.55	14.74	32.88	41.13	14.95	15.57	30.15	13.78
Merged-chr15-95793948-3	chr15	95793854	95794054	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3111.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	26.25	34.96	11.98	12.87	33.14	53.31	27.9	20.78	37.76	45.69	41.71	10.34
Merged-chr8-22658735-3	chr8	22658652	22658852	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010546)	TTS (NM_010546)	-5315.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	10.5	11.07	16.54	11.26	22.09	20.7	13.62	21.5	17.31	12.05	16.08	10.96
Merged-chr16-30689498-1	chr16	30689398	30689598	+	942.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	89775.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	1.62	4.02	0.0	6.84	4.09	0.31	1.0	2.55	25.18	26.61	26.13	9.71
Merged-chr7-126554207-3	chr7	126554108	126554308	+	942.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146200, intron 15 of 20)	RSINE1|SINE|B4	12158.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	26.25	18.86	27.95	18.5	22.5	23.52	9.3	18.25	11.41	10.04	24.62	19.74
Merged-chr15-9127759-2	chr15	9127661	9127861	+	942.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 3 of 9)	intron (NM_013787, intron 3 of 9)	12693.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	12.52	5.28	27.95	16.49	4.5	2.51	7.64	14.52	0.59	0.0	2.51	2.51
Merged-chr5-140206048-3	chr5	140205948	140206148	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-31130.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.85	11.32	13.12	5.63	24.55	23.83	32.22	26.07	15.54	24.1	27.13	12.53
Merged-chr12-80128780-3	chr12	80128699	80128899	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	4045.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	8.48	12.07	13.69	10.86	16.36	18.81	13.29	15.28	31.27	24.6	39.7	19.11
Merged-chr5-112281960-3	chr5	112281852	112282052	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	5261.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	10.5	7.04	45.07	24.94	33.96	35.75	36.21	52.88	17.31	25.11	20.1	20.68
Merged-chr10-14086004-2	chr10	14085870	14086070	+	942.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119591.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.44	5.53	9.7	11.26	5.73	15.99	8.64	11.97	13.96	14.06	10.55	11.28
Merged-chr14-21268424-3	chr14	21268336	21268536	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	RMER19B|LTR|ERVK	192284.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	14.54	10.56	10.84	10.46	16.36	16.62	15.94	30.93	19.47	9.54	12.56	15.04
Merged-chr3-31394103-3	chr3	31394000	31394200	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83781.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	7.27	13.33	11.98	26.95	43.77	37.0	98.32	96.39	41.7	18.58	64.32	22.24
Merged-chr16-36068584-3	chr16	36068482	36068682	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	2933.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	25.04	16.6	13.69	14.48	12.27	29.16	26.57	22.07	26.16	15.57	16.58	17.86
Merged-chr11-99073979-3	chr11	99073827	99074027	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172564, exon 7 of 13)	exon (NM_172564, exon 7 of 13)	15379.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	12.11	8.55	6.28	15.69	14.32	12.54	10.63	14.05	16.92	11.05	15.58	9.08
Merged-chr3-142766369-3	chr3	142766260	142766460	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	1113.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	12.52	9.06	4.56	9.25	20.86	21.95	7.97	13.43	26.16	24.6	14.07	17.23
Merged-chr1-163975295-3	chr1	163975188	163975388	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19508.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	16.56	15.85	19.4	17.29	11.86	13.17	5.31	16.99	19.28	18.08	26.63	11.59
Merged-chr14-51984438-3	chr14	51984320	51984520	+	942.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	-413.0	NM_001145921	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	21.8	19.87	13.12	10.46	12.27	32.93	18.6	14.38	26.75	25.61	22.61	7.83
Merged-chr14-57808749-3	chr14	57808658	57808858	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198605, intron 7 of 8)	intron (NM_198605, intron 7 of 8)	10334.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	9.29	11.57	19.97	22.93	14.73	21.64	9.97	17.8	16.33	25.61	33.16	23.18
Merged-chr12-100615344-3	chr12	100615237	100615437	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-94515.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	14.94	15.85	31.38	28.96	20.46	9.72	26.57	25.82	20.06	10.54	17.59	13.78
Merged-chr14-56888106-3	chr14	56888010	56888210	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177627, intron 2 of 2)	intron (NM_177627, intron 2 of 2)	1267.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	16.56	18.11	9.13	15.69	27.0	25.71	18.93	19.01	17.9	11.05	21.61	17.86
Merged-chr1-193170067-3	chr1	193169977	193170177	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016851, exon 8 of 8)	3' UTR (NM_016851, exon 8 of 8)	-3392.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	27.86	22.13	16.54	19.31	13.09	16.62	10.63	13.91	28.72	18.08	28.14	23.18
Merged-chr11-55470629-3	chr11	55470605	55470805	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	953.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	10.9	12.83	11.98	6.84	20.05	17.56	16.28	6.2	26.55	25.61	15.58	15.04
Merged-chr9-44522135-3	chr9	44522050	44522250	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	4271.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	15.75	13.83	14.83	6.03	18.82	21.32	10.3	15.5	23.6	42.68	22.61	20.36
Merged-chr1-133033946-3	chr1	133033875	133034075	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-3388.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	25.84	16.6	11.41	10.46	14.32	21.01	11.29	9.95	25.57	15.06	21.61	15.35
Merged-chr2-160872601-2	chr2	160872495	160872695	+	942.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177263, intron 1 of 3)	CpG	395.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	13.73	7.04	26.81	10.05	20.05	9.41	15.61	16.12	11.8	16.07	26.13	15.98
Merged-chr15-39777463-4	chr15	39777332	39777532	+	942.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-19613.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	7.27	5.53	13.12	12.87	18.0	6.59	22.26	26.64	20.06	8.03	43.72	12.84
Merged-chr15-27784099-5	chr15	27783945	27784145	+	942.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-102503.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	11.71	7.55	25.67	10.86	11.86	13.8	2.99	10.91	14.75	17.57	16.58	15.98
Merged-chr7-141491098-3	chr7	141491002	141491202	+	942.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 4 of 7)	intron (NM_001252588, intron 4 of 7)	14722.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	10.5	13.08	19.4	13.27	40.5	25.71	22.92	28.77	25.57	18.58	42.71	17.23
Merged-chr13-89834670-1	chr13	89834570	89834770	+	942.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-92158.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	31.67	21.59	31.66	10.02
Merged-chrX-164836677-3	chrX	164836582	164836782	+	942.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	143693.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	50.47	46.03	54.76	57.92	35.18	28.22	37.87	61.6	16.92	9.04	23.62	14.41
Merged-chr14-14804966-3	chr14	14804859	14805059	+	942.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15856.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	19.38	9.06	38.79	32.98	33.96	30.73	39.2	55.04	28.32	11.55	45.22	24.12
Merged-chr2-27759062-2	chr2	27758986	27759186	+	942.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	48503.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.25	10.06	7.42	7.24	7.77	13.8	10.3	5.52	14.16	12.55	9.04	8.77
Merged-chrY-90761450-2	chrY	90761348	90761548	+	942.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6398.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	18.57	8.3	5.7	10.46	32.32	17.25	21.92	0.0	24.78	14.06	50.75	3.13
Merged-chr18-64989655-3	chr18	64989566	64989766	+	942.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-33861.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	26.65	34.21	17.68	8.04	19.23	28.85	10.3	5.78	31.47	28.62	27.13	14.1
Merged-chr11-23821852-3	chr11	23821749	23821949	+	942.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50879.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	30.28	16.85	23.96	22.12	51.55	45.78	50.49	42.42	38.75	25.11	27.64	7.83
Merged-chr14-54714293-3	chr14	54714197	54714397	+	942.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2123.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	17.77	24.15	14.26	19.31	25.36	33.87	19.6	21.31	19.87	12.55	16.58	13.78
Merged-chr2-75775902-3	chr2	75775795	75775995	+	942.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	14.54	13.33	19.4	8.85	19.64	16.93	18.93	9.53	26.55	12.05	16.58	14.1
Merged-chr1-89575152-3	chr1	89575059	89575259	+	942.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108733.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	13.33	9.31	21.11	23.33	20.46	14.11	16.28	22.01	24.98	12.55	23.11	9.4
Merged-chr9-105034616-2	chr9	105034514	105034714	+	942.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001357439)	TTS (NM_001357439)	-18654.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	17.36	24.9	13.69	14.08	11.05	12.23	4.32	16.57	0.0	1.0	0.5	0.94
Merged-chr4-63089643-2	chr4	63089537	63089737	+	942.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028326, intron 4 of 14)	intron (NM_028326, intron 4 of 14)	64535.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	12.52	11.32	13.69	12.47	13.91	14.74	11.96	17.69	2.56	2.01	7.54	4.39
Merged-chr7-29906290-4	chr7	29906217	29906417	+	942.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011754)	promoter-TSS (NM_011754)	-192.0	NR_106128	102465770.0		NR_106128	ENSMUSG00000098873	Mir7668	Gm27961|mmu-mir-7668	microRNA 7668	ncRNA	9.69	12.07	11.98	10.46	7.36	15.05	9.3	7.35	37.57	38.16	60.8	33.52
Merged-chr17-34079767-3	chr17	34079667	34079867	+	942.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12612.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	27.05	22.64	14.83	28.15	20.05	21.01	4.98	7.77	35.8	26.61	38.19	16.29
Merged-chr18-46452310-3	chr18	46452215	46452415	+	942.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13501.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	15.34	7.55	27.38	10.46	20.86	21.64	18.27	38.44	16.92	23.1	24.62	13.78
Merged-chr2-30587414-3	chr2	30587319	30587519	+	942.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7625.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	17.77	15.34	26.24	10.86	27.41	51.43	21.26	22.46	36.98	34.65	27.13	14.1
Merged-chr15-77839065-3	chr15	77838956	77839156	+	942.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	3119.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	18.98	19.37	11.41	16.49	11.86	25.71	2.99	11.05	21.24	14.56	21.1	10.65
Merged-chr12-84218462-3	chr12	84218366	84218566	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	CpG	415.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	10.9	9.81	6.85	11.26	13.09	14.11	12.62	8.83	13.18	8.54	17.08	10.02
Merged-chrX-9455755-3	chrX	9455647	9455847	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 4 of 12)	Lx4B|LINE|L1	13577.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	9.29	15.59	11.41	9.65	10.23	16.62	9.97	15.08	16.33	18.08	14.07	11.9
Merged-chr4-135856564-3	chr4	135856478	135856678	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080387, intron 1 of 5)	CpG	507.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	24.23	18.86	14.83	16.49	32.32	34.81	17.27	20.16	36.98	34.65	29.65	21.62
Merged-chr17-88435877-3	chr17	88435780	88435980	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4824.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	10.5	12.32	18.83	6.44	24.14	30.73	18.6	19.4	20.85	29.62	17.08	13.47
Merged-chr18-43493005-3	chr18	43492912	43493112	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54726.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	7.27	9.06	13.69	5.63	4.91	15.05	11.63	15.64	19.08	17.07	22.11	4.7
Merged-chr2-154436736-2	chr2	154436648	154436848	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172860, intron 1 of 10)	CpG	264.0	NM_009823	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	18.17	19.37	18.83	18.9	11.05	5.33	19.93	15.25	16.33	17.57	24.62	17.86
Merged-chr7-128344687-1	chr7	128344587	128344787	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46556.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	10.09	2.01	7.99	4.83	13.09	4.08	6.64	9.87	8.06	6.03	15.58	5.95
Merged-chr9-95674666-1	chr9	95674566	95674766	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029620, intron 3 of 8)	MTD|LTR|ERVL-MaLR	37038.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	5.65	1.51	0.57	2.01	3.68	3.76	8.97	8.21	4.33	7.03	15.07	4.39
Merged-chr10-34112488-1	chr10	34112388	34112588	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15484.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	2.42	5.03	9.13	6.03	5.32	4.39	6.64	10.43	3.15	2.51	3.52	2.19
Merged-chr5-148956292-2	chr5	148956184	148956384	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6034.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	4.04	5.53	4.56	2.41	16.77	10.35	4.32	11.41	23.8	23.1	29.65	17.54
Merged-chr11-82845899-3	chr11	82845797	82845997	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	-16854.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	21.4	14.09	14.26	4.42	27.0	34.18	15.61	21.93	38.35	38.16	38.69	12.53
Merged-chr12-55495287-3	chr12	55495181	55495381	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2634.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	17.36	15.59	12.55	14.88	22.5	16.93	9.97	12.7	18.69	22.09	34.17	9.71
Merged-chr14-31401128-3	chr14	31401028	31401228	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16549.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.06	14.84	19.4	14.48	21.27	14.42	7.31	16.43	24.19	15.06	15.07	10.65
Merged-chr7-65475920-3	chr7	65475825	65476025	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-104681.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	12.92	17.36	17.68	32.98	11.45	10.35	17.94	27.48	22.62	17.57	20.6	18.17
Merged-chr6-5112603-1	chr6	5112503	5112703	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 8 of 15)	intron (NM_181595, intron 8 of 15)	81343.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.83	3.02	10.27	10.05	3.68	3.76	6.64	9.36	5.9	5.02	5.02	0.94
Merged-chr9-45314148-2	chr9	45314062	45314262	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-4938.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	5.65	3.27	1.71	4.42	10.64	11.92	5.31	11.55	60.38	60.25	54.27	42.29
Merged-chr1-170903590-3	chr1	170903500	170903700	+	941.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	9341.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	12.92	5.03	26.81	30.16	23.32	17.25	22.26	42.22	26.16	11.05	23.62	17.86
Merged-chr18-54992129-3	chr18	54992028	54992228	+	941.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	463.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	15.75	14.84	6.28	9.25	7.36	12.86	10.63	10.21	10.82	13.05	15.07	11.9
Merged-chr8-109455304-3	chr8	109455204	109455404	+	941.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38723.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	3.63	11.82	29.09	26.14	13.91	12.86	20.93	24.73	11.41	5.02	23.11	9.4
Merged-chr9-64824865-3	chr9	64824766	64824966	+	941.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	13855.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	16.96	11.32	11.98	14.88	10.23	20.38	10.96	18.93	9.05	8.03	24.12	13.16
Merged-chr2-3519516-3	chr2	3519435	3519635	+	941.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177647, intron 2 of 3)	intron (NM_177647, intron 2 of 3)	6470.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	11.31	18.61	6.28	14.48	11.05	10.98	9.3	12.81	16.52	19.58	21.1	10.34
Merged-chr10-59283375-2	chr10	59283270	59283470	+	941.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39926.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	6.06	7.04	6.85	8.04	20.05	11.92	8.97	14.3	11.21	22.09	14.57	13.78
Merged-chr11-96775875-3	chr11	96775809	96776009	+	941.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028965, intron 2 of 8)	intron (NM_028965, intron 2 of 8)	1646.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	15.75	7.29	11.98	22.93	26.59	26.97	21.92	22.79	31.27	28.62	21.1	12.84
Merged-chr8-75108759-3	chr8	75108692	75108892	+	941.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-717.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	15.34	22.13	6.85	13.27	13.5	19.76	7.97	12.17	15.93	15.06	14.57	8.46
Merged-chr17-33562491-3	chr17	33562391	33562591	+	941.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6784.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	17.36	14.84	21.68	18.1	22.09	8.15	11.96	19.93	17.7	12.05	28.14	20.68
Merged-chr8-71634494-3	chr8	71634397	71634597	+	941.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-3391.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	15.75	8.3	15.4	14.08	14.73	13.8	10.63	13.79	19.28	19.08	19.6	12.53
Merged-chr18-61127746-2	chr18	61127648	61127848	+	941.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 15 of 21)	L3|LINE|CR1	10280.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	6.46	3.27	10.27	4.02	22.91	15.68	15.28	8.16	30.88	36.15	32.16	15.04
Merged-chr15-66272527-2	chr15	66272426	66272626	+	941.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	13698.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	6.86	10.82	19.4	14.48	12.27	6.59	11.96	18.42	2.75	7.03	10.05	11.28
Merged-chr13-46906127-3	chr13	46906025	46906225	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	G-rich|Low_complexity|Low_complexity	23593.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	13.73	6.79	16.54	24.53	9.82	12.54	14.95	6.84	33.24	18.08	31.66	17.86
Merged-chr4-108327199-3	chr4	108327149	108327349	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027250)	promoter-TSS (NM_027250)	-903.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	3.63	9.56	9.7	14.48	9.82	13.8	7.64	11.89	18.88	11.55	13.57	5.33
Merged-chr4-127242934-3	chr4	127242833	127243033	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-851.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	16.56	20.88	10.27	16.09	13.5	23.52	16.28	18.93	28.32	23.6	26.13	13.78
Merged-chr10-82899078-1	chr10	82898978	82899178	+	941.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	32452.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	1.62	0.0	4.56	2.41	0.82	0.31	4.65	6.03	27.34	17.07	59.29	11.28
Merged-chr9-55390394-1	chr9	55390294	55390494	+	941.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	RCHARR1|DNA|hAT-Charlie	63481.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	10.5	4.28	9.7	5.63	11.86	10.66	17.27	12.84	5.31	2.51	5.53	3.76
Merged-chr8-120537906-5	chr8	120537800	120538000	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106159)	promoter-TSS (NR_106159)	-174.0	NR_151732	74227.0	Mm.334856	NR_151732	ENSMUSG00000102737	1700016A09Rik	-	RIKEN cDNA 1700016A09 gene	ncRNA	7.67	12.58	13.12	10.46	12.68	11.92	17.94	19.43	15.34	16.57	22.11	19.42
Merged-chr5-90365553-5	chr5	90365468	90365668	+	941.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	CpG	617.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	6.86	10.56	10.84	6.03	10.64	16.31	21.59	9.36	17.31	17.57	19.6	16.29
Merged-chr4-126153060-3	chr4	126152969	126153169	+	941.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	5066.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	12.11	8.55	15.97	14.48	13.91	21.32	21.59	26.92	21.05	13.05	35.68	32.27
Merged-chr6-38352123-3	chr6	38352019	38352219	+	941.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	2484.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	25.04	18.11	22.25	10.05	22.09	39.2	9.3	19.63	33.83	28.62	19.6	10.96
Merged-chr19-29500546-2	chr19	29500449	29500649	+	941.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21438.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.04	2.26	6.85	1.61	14.73	15.37	15.61	18.76	17.7	8.54	9.04	10.65
Merged-chr9-23597932-3	chr9	23597809	23598009	+	941.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	374833.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	12.92	8.8	18.83	21.72	22.91	15.99	15.28	17.58	25.37	12.05	16.58	14.72
Merged-chr4-120882350-3	chr4	120882229	120882429	+	941.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	27530.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	22.21	23.9	17.11	8.45	29.05	53.31	23.58	15.28	50.55	72.81	50.75	14.72
Merged-chr6-29785963-3	chr6	29785862	29786062	+	941.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	L1M2|LINE|L1	17519.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	17.36	13.08	19.4	20.51	5.73	20.07	12.29	19.15	9.44	16.57	7.54	14.41
Merged-chr6-72881410-3	chr6	72881301	72881501	+	941.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	17891.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	6.86	11.57	14.83	16.49	5.73	9.72	17.94	21.79	12.19	8.54	22.61	13.47
Merged-chr19-28679998-5	chr19	28679853	28680053	+	941.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305671, exon 1 of 10)	5' UTR (NM_001305671, exon 1 of 10)	124.0	NM_001305671	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	3.23	11.57	12.55	16.89	16.77	10.03	12.62	10.15	6.1	9.04	10.55	11.9
Merged-chr2-27414593-1	chr2	27414493	27414693	+	941.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	13015.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.65	3.27	4.56	7.24	3.68	13.17	9.63	11.24	5.31	8.03	3.52	8.46
Merged-chr7-114016465-3	chr7	114016364	114016564	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	101317.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	19.79	11.07	15.97	16.49	5.73	9.09	13.29	13.68	23.41	22.59	28.64	12.22
Merged-chr7-25109522-3	chr7	25109444	25109644	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-12369.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	5.65	5.53	15.97	10.86	20.46	23.52	14.95	22.79	21.05	37.66	21.1	15.04
Merged-chr1-86441594-3	chr1	86441499	86441699	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15270.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	16.15	21.13	13.69	9.65	22.91	33.55	18.93	21.45	45.63	66.28	37.18	33.52
Merged-chr3-153408075-3	chr3	153407992	153408192	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-109443.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	16.56	13.33	20.54	15.28	12.68	6.27	9.3	14.8	13.57	7.53	16.08	14.41
Merged-chr4-129794196-1	chr4	129794096	129794296	+	941.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26283.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.86	6.04	4.56	1.61	4.5	9.72	3.32	2.94	25.96	17.57	8.54	7.52
Merged-chr9-77655348-3	chr9	77655249	77655449	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172925, exon 3 of 3)	exon (NM_172925, exon 3 of 3)	18617.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	21.4	26.16	11.41	18.1	18.41	22.58	27.9	35.33	24.19	27.62	29.65	29.13
Merged-chr15-103274749-2	chr15	103274662	103274862	+	941.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	1874.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	4.85	14.34	6.85	8.45	12.68	19.44	15.94	13.77	12.0	9.54	17.08	12.22
Merged-chr7-127008357-3	chr7	127008247	127008447	+	941.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6247.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	12.52	15.85	20.54	1.21	33.96	41.08	9.3	16.15	24.19	33.14	23.62	9.4
Merged-chr12-95748966-3	chr12	95748871	95749071	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	56745.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	11.31	11.57	13.12	17.29	42.14	21.32	19.27	35.47	57.63	29.12	47.23	24.12
Merged-chr10-17560191-3	chr10	17560095	17560295	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163033.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	9.69	14.59	15.97	22.52	19.64	10.66	14.95	25.21	18.88	7.03	15.58	12.53
Merged-chr6-117816456-3	chr6	117816367	117816567	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24714.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	18.57	9.06	29.09	24.13	20.46	15.37	31.56	42.81	12.19	17.57	28.14	19.11
Merged-chr17-69439346-3	chr17	69439245	69439445	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145192)	promoter-TSS (NM_001145192)	19.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	8.08	11.82	14.26	19.71	21.27	20.38	17.94	27.67	20.46	19.08	25.63	11.28
Merged-chr13-6906189-3	chr13	6906105	6906305	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-257434.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	10.5	13.58	21.68	25.74	32.73	15.05	25.91	46.51	16.72	14.56	41.2	11.9
Merged-chr14-56811241-3	chr14	56811094	56811294	+	941.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152252)	promoter-TSS (NR_152252)	270.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	8.48	11.07	5.13	14.08	4.91	15.99	15.61	10.54	15.34	14.06	13.57	8.46
Merged-chr4-74357741-2	chr4	74357640	74357840	+	941.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 15 of 20)	intron (NM_001356561, intron 15 of 20)	105861.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	7.27	4.28	7.99	18.1	19.23	17.87	11.63	26.13	14.55	12.55	26.13	13.78
Merged-chr4-139205132-3	chr4	139205049	139205249	+	941.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	11038.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	19.38	4.53	10.84	14.08	6.95	2.51	7.31	9.48	18.49	15.57	11.05	14.41
Merged-chr2-27266034-3	chr2	27265935	27266135	+	941.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 29 of 29)	L1MEg|LINE|L1	-18732.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	25.44	20.37	9.7	20.51	18.41	12.86	10.96	13.18	20.65	26.11	29.65	14.41
Merged-chr1-133132189-3	chr1	133132076	133132276	+	941.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1010.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	12.11	15.59	6.28	10.46	17.18	13.17	7.97	7.68	11.21	16.57	29.14	11.28
Merged-chr9-115458348-3	chr9	115458271	115458471	+	941.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76552.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	9.29	9.81	10.84	19.71	11.45	8.78	18.27	23.19	22.23	10.54	38.69	25.37
Merged-chr18-82917654-3	chr18	82917514	82917714	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033307)	TTS (NR_033307)	2946.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	25.04	22.64	4.56	20.11	20.86	26.03	6.98	18.93	14.36	19.58	16.58	9.4
Merged-chr12-83949953-3	chr12	83949856	83950056	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	-652.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	8.08	11.82	17.11	10.46	18.0	23.83	11.29	14.41	19.67	18.58	19.09	11.9
Merged-chr2-116984039-3	chr2	116983942	116984142	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83890.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	10.9	15.34	20.54	15.69	19.23	24.15	22.26	15.0	25.18	18.08	9.04	12.53
Merged-chr19-3283008-3	chr19	3282905	3283105	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009212)	promoter-TSS (NM_009212)	5.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	18.98	14.09	25.67	9.65	10.64	20.07	10.3	12.45	17.7	35.65	23.62	15.66
Merged-chr15-28365347-2	chr15	28365243	28365443	+	941.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 47 of 78)	intron (NM_133365, intron 47 of 78)	161577.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	5.65	3.27	6.28	9.25	3.68	6.59	3.99	9.79	13.96	3.01	23.11	3.76
Merged-chr3-144585301-3	chr3	144585199	144585399	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14872.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	17.36	9.31	22.25	15.69	11.86	13.48	17.61	30.5	18.49	14.56	23.62	10.02
Merged-chr9-106448634-1	chr9	106448534	106448734	+	941.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	-6.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	10.09	4.28	4.56	0.8	2.05	2.51	1.0	3.79	12.39	18.08	16.08	10.96
Merged-chr1-157139570-1	chr1	157139470	157139670	+	941.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-30890.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.46	2.26	2.85	0.8	12.27	11.92	10.63	13.85	2.16	4.02	3.52	0.63
Merged-chr7-133776682-4	chr7	133776533	133776733	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	170.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	16.56	20.63	23.39	24.53	16.77	19.13	30.89	23.13	19.87	22.59	30.15	17.54
Merged-chr9-98351569-3	chr9	98351472	98351672	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	55002.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	22.61	30.94	25.1	19.31	40.09	49.54	26.24	40.91	12.78	8.54	18.59	4.39
Merged-chr5-9186632-2	chr5	9186514	9186714	+	941.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24838.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	5.25	2.01	6.28	8.04	10.23	4.7	10.96	16.04	16.72	12.05	26.63	15.98
Merged-chr2-164679350-3	chr2	164679254	164679454	+	941.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5267.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	13.33	12.32	7.99	11.66	16.36	20.38	13.62	11.69	15.14	22.09	26.63	21.93
Merged-chr9-56265129-3	chr9	56265033	56265233	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-104063.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	13.33	12.32	13.69	11.26	34.36	32.93	12.62	32.1	25.18	32.64	21.1	15.04
Merged-chr1-178242331-3	chr1	178242231	178242431	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024282, intron 2 of 4)	B2_Mm2|SINE|B2	54914.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	12.11	14.34	6.85	13.67	12.27	28.54	20.59	16.46	26.75	41.17	28.14	32.58
Merged-chr13-32903422-3	chr13	32903318	32903518	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5278.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	13.33	14.59	14.26	6.44	17.18	12.54	12.62	14.1	25.18	18.58	34.67	15.04
Merged-chr5-93128079-3	chr5	93127970	93128170	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	34654.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	8.08	13.58	22.25	18.1	16.77	13.17	14.28	22.12	16.52	16.57	19.09	10.34
Merged-chr5-64959227-3	chr5	64959093	64959293	+	941.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	903.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	5.65	10.82	21.11	8.85	8.59	10.03	4.65	12.87	16.52	15.57	6.53	11.28
Merged-chr5-43234575-4	chr5	43234514	43234714	+	941.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	740.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	7.27	12.32	8.56	11.26	11.86	16.31	19.27	15.42	18.49	18.58	28.14	21.62
Merged-chr19-6668746-3	chr19	6668624	6668824	+	941.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125654.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	28.27	23.39	32.52	46.25	26.59	27.28	21.92	20.07	26.75	14.06	14.07	17.54
Merged-chr11-94160628-3	chr11	94160535	94160735	+	941.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	16.15	11.32	25.1	7.24	51.14	59.58	25.58	35.07	35.01	41.67	29.14	20.68
Merged-chr2-117352909-3	chr2	117352804	117353004	+	941.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10027.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	15.34	26.91	25.67	24.53	30.27	23.52	10.3	23.41	39.53	35.65	55.78	10.02
Merged-chr4-107082375-3	chr4	107082284	107082484	+	941.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346552, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-14507.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	16.15	8.3	25.1	12.07	18.0	17.25	19.6	21.34	23.6	8.03	31.15	20.68
Merged-chr19-56777224-3	chr19	56777115	56777315	+	941.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36468.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	19.38	14.09	15.4	6.44	14.32	25.09	13.62	12.39	9.44	17.07	25.12	11.28
Merged-chr10-111365262-3	chr10	111365172	111365372	+	941.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66593.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	14.13	7.29	13.69	23.33	22.5	17.25	34.55	62.52	10.23	4.02	30.15	15.98
Merged-chr5-115977874-3	chr5	115977764	115977964	+	941.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007708, intron 27 of 46)	ORR1D2|LTR|ERVL-MaLR	46564.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	12.92	15.09	25.1	11.26	9.82	20.7	19.93	27.45	17.11	34.14	32.16	11.28
Merged-chr7-128393070-3	chr7	128392975	128393175	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25097.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	21.0	18.86	9.7	13.27	15.14	17.25	10.63	12.5	25.18	14.06	12.06	7.83
Merged-chrX-150935231-1	chrX	150935131	150935331	+	941.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82062.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	6.46	4.28	9.13	6.84	5.32	10.98	13.95	25.6	3.15	3.01	17.59	4.7
Merged-chr8-128171314-3	chr8	128171191	128171391	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106934.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	14.94	14.59	19.4	20.11	14.32	16.93	3.99	12.87	34.62	27.62	24.12	13.16
Merged-chr15-58604819-3	chr15	58604717	58604917	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	189349.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	11.31	8.3	13.69	18.5	19.64	13.8	8.97	17.3	14.55	7.53	16.58	15.66
Merged-chr14-103096910-1	chr14	103096810	103097010	+	941.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	2094.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	2.83	5.53	2.28	8.04	2.05	9.72	11.96	16.04	7.67	7.53	8.04	5.33
Merged-chr16-44026450-3	chr16	44026359	44026559	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 5 of 16)	L1M4|LINE|L1	1486.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	13.73	14.84	11.41	12.47	16.36	18.5	10.3	25.15	31.08	14.06	22.61	14.1
Merged-chr4-99211831-3	chr4	99211730	99211930	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	17683.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	9.29	11.57	27.95	18.1	15.14	12.23	12.29	22.18	18.49	13.05	21.61	11.28
Merged-chr4-114652605-3	chr4	114652497	114652697	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169123.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	12.52	15.59	10.27	16.09	11.45	12.54	9.97	11.16	16.72	22.09	27.64	10.34
Merged-chr17-59033658-3	chr17	59033558	59033758	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-20336.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	10.5	17.86	22.82	28.56	16.77	20.07	19.93	33.62	31.47	23.1	42.71	17.54
Merged-chr7-112369188-1	chr7	112369088	112369288	+	941.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027587, intron 1 of 9)	intron (NM_027587, intron 1 of 9)	880.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	12.52	7.55	3.42	4.02	10.64	12.54	3.99	9.7	4.52	10.54	5.02	4.07
Merged-chr17-65662841-3	chr17	65662746	65662946	+	941.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-20642.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	12.52	8.8	11.41	12.07	22.09	36.69	29.23	25.74	22.23	22.09	21.1	10.02
Merged-chr5-28123268-3	chr5	28123155	28123355	+	941.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42441.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	15.75	15.34	11.41	17.29	31.91	26.97	14.95	28.82	16.52	22.59	30.65	12.53
Merged-chr8-33733161-3	chr8	33733074	33733274	+	941.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167922, intron 1 of 7)	intron (NM_001167922, intron 1 of 7)	835.0	NM_001167922	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	27.86	12.32	13.69	20.91	14.32	15.99	21.92	37.12	14.55	15.57	20.1	16.6
Merged-chr13-93755299-3	chr13	93755193	93755393	+	941.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MRLTR33|LTR|ERVK	-16386.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	14.94	11.32	39.93	27.75	15.14	30.1	18.6	29.55	19.28	13.05	12.56	12.84
Merged-chr11-3168588-2	chr11	3168508	3168708	+	941.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	24855.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	3.63	12.83	5.7	11.66	11.86	4.08	8.64	16.21	1.38	0.0	1.0	1.88
Merged-chr10-60835109-2	chr10	60835000	60835200	+	941.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3519.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	8.08	5.28	2.28	4.02	11.05	10.03	8.97	11.86	15.74	20.08	28.14	6.58
Merged-chr18-68062148-3	chr18	68062044	68062244	+	941.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	128971.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	23.82	19.12	20.54	16.49	68.73	58.64	57.13	54.59	24.78	9.54	18.59	7.52
Merged-chr7-107661362-3	chr7	107661266	107661466	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-4112.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	14.94	7.29	14.26	11.26	20.05	13.17	6.31	14.02	16.33	19.58	33.16	16.29
Merged-chr5-10682966-3	chr5	10682873	10683073	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-182056.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	12.11	9.06	18.83	24.13	52.37	25.09	43.18	58.85	20.85	25.11	34.17	15.35
Merged-chr10-57799661-3	chr10	57799570	57799770	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020561, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	5126.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	12.11	8.55	17.68	20.91	21.68	47.98	37.87	48.0	40.32	38.66	45.22	31.64
Merged-chr10-69223331-3	chr10	69223238	69223438	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	10144.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	11.31	5.53	19.97	21.72	6.55	5.96	12.95	20.64	9.64	4.52	16.58	12.53
Merged-chr3-79520106-3	chr3	79519988	79520188	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	47591.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	8.08	9.56	19.97	10.05	18.82	9.09	19.93	34.91	18.29	8.54	16.58	12.84
Merged-chr4-41503201-3	chr4	41503103	41503303	+	941.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085515)	promoter-TSS (NM_001085515)	-128.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	12.92	11.32	11.98	27.35	23.73	23.2	31.22	26.69	44.65	47.7	69.85	31.33
Merged-chr14-50896300-3	chr14	50896190	50896390	+	941.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3035.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	10.09	13.83	23.96	12.07	19.64	21.95	10.3	22.43	26.75	19.58	18.59	15.35
Merged-chr10-93487586-1	chr10	93487486	93487686	+	941.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1182.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.85	5.28	2.28	1.21	24.14	13.48	10.63	16.46	2.16	0.0	2.01	1.57
Merged-chr2-129301503-2	chr2	129301498	129301698	+	941.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4228.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.44	7.55	3.42	2.41	3.68	5.64	1.99	0.31	12.78	13.05	5.02	2.19
Merged-chr15-84183546-3	chr15	84183445	84183645	+	941.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8688.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	18.98	15.34	18.25	7.24	20.05	10.03	6.64	12.84	25.77	28.12	15.58	17.86
Merged-chr17-50393478-3	chr17	50393376	50393576	+	941.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99856.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	21.0	13.58	5.7	10.46	7.36	37.94	13.62	11.13	53.5	30.13	34.67	15.66
Merged-chr5-43867957-3	chr5	43867857	43868057	+	941.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	-852.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	21.4	25.91	15.97	11.66	43.36	73.69	42.52	22.91	23.8	42.18	31.15	11.28
Merged-chr7-27929493-3	chr7	27929389	27929589	+	941.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028538)	promoter-TSS (NM_028538)	-59.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	18.57	11.82	7.99	12.07	15.55	9.41	19.27	13.74	12.39	7.53	22.11	8.77
Merged-chr17-78315936-3	chr17	78315878	78316078	+	941.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 7 of 16)	intron (NM_015800, intron 7 of 16)	102174.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	10.09	8.3	25.1	9.25	18.41	21.01	24.25	38.58	13.96	6.03	22.61	16.29
Merged-chr17-36849664-3	chr17	36849578	36849778	+	941.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	12532.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	21.0	17.86	33.09	15.28	13.5	19.44	10.63	16.88	24.19	13.56	19.09	5.95
Merged-chr3-60580084-3	chr3	60580000	60580200	+	941.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	RMER10A|LTR|ERVL	78921.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	18.98	7.55	17.68	12.07	11.05	15.05	21.26	25.46	23.41	20.59	14.57	14.72
Merged-chr6-134630590-3	chr6	134630488	134630688	+	941.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026345, intron 1 of 3)	Charlie4a|DNA|hAT-Charlie	1900.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	20.59	18.36	14.83	14.88	20.86	16.62	11.96	16.23	20.46	23.6	14.07	9.71
Merged-chr2-66142416-3	chr2	66142266	66142466	+	941.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17573.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	12.52	9.56	18.25	22.52	6.95	8.47	22.59	18.87	12.59	9.04	17.08	15.35
Merged-chr15-99026436-3	chr15	99026347	99026547	+	941.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3444.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	19.38	15.09	19.4	21.72	18.0	23.52	16.94	8.75	20.65	16.57	18.09	9.08
Merged-chr2-167367550-2	chr2	167367439	167367639	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18361.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.46	4.28	2.28	6.84	8.59	3.14	14.28	20.55	17.9	5.52	17.08	3.45
Merged-chr11-3132175-3	chr11	3132071	3132271	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003517)	TTS (NR_003517)	8150.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	31.9	20.88	14.26	23.73	31.5	14.42	39.86	30.45	3.93	14.06	4.52	10.34
Merged-chr17-56476106-1	chr17	56476006	56476206	+	941.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	CpG	374.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	5.65	2.52	2.28	2.82	6.55	7.84	2.66	7.21	11.8	14.06	6.03	8.46
Merged-chr11-103363134-2	chr11	103363019	103363219	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	573.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.06	10.82	10.84	5.63	12.68	9.72	6.31	13.07	12.78	6.53	3.52	13.78
Merged-chr10-54060049-3	chr10	54059943	54060143	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	15753.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	19.79	10.82	13.12	16.49	18.82	16.62	15.61	28.09	25.57	14.56	18.59	10.65
Merged-chr13-112084640-2	chr13	112084550	112084750	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-203801.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.62	3.02	3.42	6.44	13.91	15.99	13.29	16.32	13.57	18.58	23.11	10.34
Merged-chr11-96837566-1	chr11	96837466	96837666	+	941.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7598.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.81	1.01	0.0	1.21	0.82	0.63	1.33	0.84	8.65	7.53	7.03	10.02
Merged-chr6-33273127-2	chr6	33273025	33273225	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347089, intron 2 of 9)	B1F|SINE|Alu	23997.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.63	4.53	7.99	4.02	16.36	3.14	8.3	10.49	18.49	8.03	27.13	8.14
Merged-chr14-54578374-3	chr14	54578288	54578488	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010590)	promoter-TSS (NM_010590)	-727.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	14.94	12.83	7.99	8.04	10.64	18.81	7.64	11.69	21.83	16.57	23.62	13.16
Merged-chr11-76897982-3	chr11	76897869	76898069	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6576.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	13.73	8.55	16.54	2.82	10.23	11.29	7.64	7.93	15.14	21.59	7.54	13.16
Merged-chr2-31770835-3	chr2	31770761	31770961	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	10688.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	12.52	13.83	12.55	9.25	24.96	35.75	17.27	23.69	31.47	53.22	33.67	25.69
Merged-chr19-44401855-1	chr19	44401755	44401955	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009127, exon 4 of 6)	exon (NM_009127, exon 4 of 6)	5854.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.25	4.02	17.11	7.64	6.55	12.54	13.95	11.21	7.47	0.5	8.04	5.64
Merged-chr17-30495440-1	chr17	30495340	30495540	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	ORR1F|LTR|ERVL-MaLR	80847.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	7.67	13.33	6.85	14.08	0.41	3.76	2.66	4.85	0.79	3.01	4.52	0.0
Merged-chr18-67974065-1	chr18	67973965	67974165	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40892.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.42	2.01	3.42	3.62	3.68	10.35	1.99	7.74	1.57	4.02	3.01	2.19
Merged-chr7-47013132-1	chr7	47013032	47013232	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4718.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.81	1.01	4.56	6.44	3.27	0.63	6.98	7.54	2.95	2.01	5.53	2.51
Merged-chr12-35042081-3	chr12	35041968	35042168	+	940.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5121.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	9.29	15.85	9.7	18.9	19.64	19.44	10.63	19.32	6.69	7.53	14.07	7.21
Merged-chr18-53951276-3	chr18	53951184	53951384	+	940.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 12 of 12)	intron (NM_152809, intron 12 of 12)	89171.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	20.19	20.63	14.83	11.26	21.68	31.36	23.25	23.27	19.08	27.11	23.62	20.36
Merged-chr3-127299600-3	chr3	127299494	127299694	+	940.927795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	109464.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	9.29	10.82	23.96	20.51	20.86	12.86	16.28	27.67	22.82	14.56	19.6	24.12
Merged-chr19-53394818-3	chr19	53394735	53394935	+	940.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4201.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	29.48	15.59	6.85	14.48	20.46	22.89	18.27	17.92	24.59	30.13	17.08	12.84
Merged-chr7-25278398-3	chr7	25278291	25278491	+	940.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3788.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	10.9	13.08	11.41	19.31	9.82	17.25	12.62	8.89	18.69	21.59	27.64	12.84
Merged-chr9-40521337-2	chr9	40521228	40521428	+	940.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	10055.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	21.0	5.53	7.99	6.44	11.86	11.92	25.24	28.07	19.47	5.52	13.57	7.52
Merged-chr11-121747172-3	chr11	121747067	121747267	+	940.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44740.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	16.56	5.53	17.11	11.66	17.18	18.5	21.59	18.56	18.88	27.62	34.67	11.59
Merged-chr7-101070565-3	chr7	101070461	101070661	+	940.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38214.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	14.54	13.83	14.26	15.28	12.27	18.5	11.29	15.67	15.14	12.05	15.07	17.23
Merged-chr2-73064204-3	chr2	73064097	73064297	+	940.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83751.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	16.15	5.28	11.98	16.89	14.73	26.34	24.58	30.0	26.16	25.11	30.15	16.92
Merged-chr9-41135020-3	chr9	41134905	41135105	+	940.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	23057.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	26.65	18.86	30.8	20.51	23.73	42.02	19.93	25.88	11.01	14.06	9.55	2.82
Merged-chr3-51228225-3	chr3	51228144	51228344	+	940.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009834, intron 1 of 2)	B3|SINE|B2	3797.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	10.5	15.09	20.54	16.09	20.46	41.39	16.94	21.84	25.96	21.09	40.7	19.11
Merged-chr13-54590825-3	chr13	54590729	54590929	+	940.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178605)	promoter-TSS (NM_178605)	598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	8.88	18.61	0.57	4.83	9.0	7.21	5.98	5.64	18.29	14.06	20.1	8.46
Merged-chr19-12475578-3	chr19	12475476	12475676	+	940.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	14797.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	19.79	11.82	16.54	12.07	19.23	7.84	10.3	18.45	29.5	31.63	44.22	28.82
Merged-chr2-72476182-3	chr2	72476076	72476276	+	940.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025866)	promoter-TSS (NM_025866)	-43.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	9.69	11.57	10.27	19.31	16.36	9.72	13.62	9.39	14.36	15.57	24.12	12.84
Merged-chr15-3259298-3	chr15	3259193	3259393	+	940.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11474.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	12.92	19.62	35.94	19.71	31.91	27.59	34.55	27.64	31.47	13.05	43.21	27.57
Merged-chr13-40971448-3	chr13	40971361	40971561	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-29549.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	14.13	9.81	23.39	16.49	41.32	52.05	24.25	33.06	36.98	38.66	25.12	15.04
Merged-chr14-45006020-3	chr14	45005864	45006064	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17853.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	5.65	9.31	22.25	13.27	11.86	19.44	7.31	11.36	11.8	7.53	12.56	6.27
Merged-chr4-133633553-3	chr4	133633440	133633640	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017968)	promoter-TSS (NM_001017968)	-111.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	15.75	15.59	9.7	19.31	29.86	29.16	11.63	23.94	20.46	20.08	26.13	13.78
Merged-chr15-100729462-3	chr15	100729352	100729552	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161767)	promoter-TSS (NM_001161767)	-76.0	NM_172451	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	17.36	10.06	6.85	5.63	14.73	12.23	6.98	9.93	18.69	15.06	15.07	11.9
Merged-chr10-80510495-3	chr10	80510378	80510578	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	15572.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	12.52	13.58	19.4	6.44	7.36	11.6	10.63	16.63	17.51	17.57	16.08	10.96
Merged-chr6-22003091-3	chr6	22003003	22003203	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	17193.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	13.73	7.04	14.26	18.9	13.5	14.74	14.28	19.91	12.59	6.03	20.1	5.01
Merged-chr8-68954063-3	chr8	68953963	68954163	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73508.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.85	4.02	20.54	10.05	11.86	2.82	8.97	17.8	12.98	0.5	28.64	10.96
Merged-chr4-89351680-2	chr4	89351588	89351788	+	940.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40656.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.25	9.06	2.85	0.8	9.41	21.01	13.62	12.84	17.9	20.59	10.05	8.77
Merged-chr15-64060558-4	chr15	64060508	64060708	+	940.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-160.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.06	17.86	10.84	9.25	11.45	11.6	9.3	10.37	12.19	27.11	19.6	5.64
Merged-chr8-69038521-2	chr8	69038413	69038613	+	940.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50223.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	8.88	5.03	4.56	4.83	15.14	15.99	5.65	13.46	23.21	24.6	44.72	15.66
Merged-chr3-148982504-3	chr3	148982397	148982597	+	940.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27862.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	15.34	14.09	21.11	18.5	34.77	42.33	30.56	56.58	23.01	17.57	16.58	7.83
Merged-chr2-131037326-3	chr2	131037224	131037424	+	940.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3074.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	17.36	21.88	24.53	34.99	27.82	30.73	22.92	30.95	13.77	25.61	12.06	12.53
Merged-chr4-53239084-3	chr4	53239003	53239203	+	940.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-7093.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.86	9.81	11.41	12.47	11.05	12.54	14.95	19.68	19.08	15.57	23.62	11.59
Merged-chr16-4584702-2	chr16	4584591	4584791	+	940.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-10022.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	13.33	21.88	9.7	7.24	7.36	9.41	2.66	1.91	15.14	12.05	14.07	1.88
Merged-chr8-26887087-4	chr8	26887045	26887245	+	940.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-62722.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.04	6.29	7.99	8.85	14.32	3.14	6.31	8.21	12.39	11.55	11.05	8.77
Merged-chr11-31902480-3	chr11	31902384	31902584	+	940.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	31544.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	11.31	11.82	15.4	3.62	18.0	19.76	9.63	15.95	28.52	12.05	30.15	10.96
Merged-chr3-95652584-3	chr3	95652490	95652690	+	940.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6131.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	18.17	16.85	13.12	8.85	14.32	17.25	14.62	10.77	23.21	26.11	28.64	18.8
Merged-chr3-79177319-3	chr3	79177187	79177387	+	940.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31412.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	18.57	8.55	13.69	3.62	18.41	14.42	3.99	6.98	27.54	25.61	26.13	14.1
Merged-chr17-43534989-3	chr17	43534896	43535096	+	940.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001254953, exon 3 of 3)	exon (NM_001254953, exon 3 of 3)	8643.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	24.23	14.84	9.7	22.93	29.05	21.95	24.91	31.93	14.75	21.59	16.58	11.59
Merged-chr12-102430000-4	chr12	102429969	102430169	+	940.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	9744.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	10.9	8.05	9.7	17.29	15.96	16.62	13.95	12.59	8.85	9.04	6.53	7.83
Merged-chr5-147758250-3	chr5	147758142	147758342	+	940.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32254.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	9.29	16.6	16.54	7.24	13.5	17.87	9.3	13.23	35.4	29.12	31.15	23.49
Merged-chr15-76091728-3	chr15	76091636	76091836	+	940.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358359)	promoter-TSS (NM_001358359)	-46.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	18.98	14.34	13.12	20.91	34.77	24.77	18.93	25.82	28.72	18.58	15.58	19.11
Merged-chr11-83020872-3	chr11	83020785	83020985	+	940.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167743)	promoter-TSS (NM_001167743)	-75.0	NM_181545	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	12.11	11.57	21.11	16.49	16.77	17.56	4.98	14.86	23.21	17.07	12.06	14.1
Merged-chr3-133547065-3	chr3	133546953	133547153	+	940.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2663.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	12.11	13.33	13.12	12.47	14.73	17.56	13.95	18.56	16.13	18.58	15.07	10.96
Merged-chr7-137405396-2	chr7	137405288	137405488	+	940.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029886, intron 1 of 3)	L1MEc|LINE|L1	5368.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	7.27	2.52	9.7	7.64	17.59	10.66	9.3	13.93	11.6	6.53	22.11	13.16
Merged-chr11-86576191-3	chr11	86576084	86576284	+	940.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7974.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	12.52	11.57	25.1	8.04	18.82	27.59	5.98	14.61	30.49	25.61	33.67	15.04
Merged-chr10-79925472-3	chr10	79925377	79925577	+	940.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1566.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	28.67	34.21	20.54	36.2	38.46	44.21	13.95	29.92	40.32	31.13	42.21	27.88
Merged-chr9-77686054-2	chr9	77685960	77686160	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49328.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	5.25	2.52	22.25	19.71	3.27	2.51	6.31	16.6	2.36	0.0	2.51	1.25
Merged-chr15-74924142-2	chr15	74924035	74924235	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30916.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	35.94	34.71	28.52	15.28	16.36	25.4	9.63	6.64	3.93	1.0	0.0	0.63
Merged-chr7-24389655-3	chr7	24389537	24389737	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9991.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	18.57	17.86	10.27	9.25	23.32	17.87	12.95	21.73	97.16	99.42	121.6	49.5
Merged-chr8-72323845-1	chr8	72323745	72323945	+	940.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4783.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	8.48	1.26	4.56	5.63	4.09	3.76	3.99	7.68	6.69	3.01	7.54	2.51
Merged-chr15-36231422-1	chr15	36231322	36231522	+	940.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012031, intron 16 of 18)	intron (NM_012031, intron 16 of 18)	8742.0	NR_106173	102465888.0		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	2.42	0.5	1.71	1.61	15.55	12.54	9.63	10.68	2.16	2.01	0.5	1.57
Merged-chr5-67823914-3	chr5	67823813	67824013	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	23518.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	10.9	7.04	15.4	7.64	13.5	10.35	18.93	22.65	21.64	21.09	21.61	16.29
Merged-chr9-63960529-3	chr9	63960443	63960643	+	940.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	61516.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	15.34	9.81	31.95	10.05	21.27	25.09	14.95	13.96	22.42	13.05	25.63	19.74
Merged-chr5-105684150-3	chr5	105684059	105684259	+	940.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15810.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	21.0	16.85	14.26	14.88	39.68	19.13	46.84	44.41	20.06	11.55	32.66	12.53
Merged-chr10-8878994-3	chr10	8878895	8879095	+	940.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	7075.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	14.94	12.07	9.13	16.49	14.32	18.5	13.62	16.4	30.29	22.59	45.22	12.84
Merged-chr8-123478598-3	chr8	123478510	123478710	+	940.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028260, intron 1 of 15)	RMER15|LTR|ERVL	748.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	23.42	12.83	15.97	6.03	20.46	18.5	13.95	12.5	9.44	13.05	10.55	11.28
Merged-chr6-4902981-3	chr6	4902870	4903070	+	940.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181595)	promoter-TSS (NM_181595)	-350.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	8.08	11.82	10.84	10.05	13.91	10.98	16.94	9.95	22.23	21.59	19.6	16.92
Merged-chr16-92868718-3	chr16	92868615	92868815	+	940.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42641.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.85	14.34	19.4	20.11	10.23	18.19	12.29	23.83	15.74	11.55	27.64	15.98
Merged-chr4-145286934-3	chr4	145286839	145287039	+	940.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 8 of 12)	intron (NM_009401, intron 8 of 12)	28208.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	15.75	14.59	14.83	12.87	21.68	12.86	4.98	15.9	27.73	24.1	20.6	25.69
Merged-chr14-46981295-3	chr14	46981171	46981371	+	940.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-20069.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	14.94	10.06	1.71	3.62	17.59	10.66	8.97	9.76	14.16	13.05	25.63	8.46
Merged-chr7-25784289-2	chr7	25784196	25784396	+	940.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4437.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	7.27	4.53	6.85	7.64	9.82	11.92	15.61	19.01	16.72	6.53	24.12	10.65
Merged-chr15-87074428-3	chr15	87074314	87074514	+	940.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-469885.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	14.54	9.56	14.83	7.24	26.59	29.48	15.61	14.24	37.96	34.14	31.15	25.06
Merged-chr2-150672962-3	chr2	150672868	150673068	+	940.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4728.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	23.42	11.57	18.25	21.72	20.86	35.75	45.84	52.57	23.01	11.05	39.7	19.74
Merged-chr6-89405193-3	chr6	89405094	89405294	+	940.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-42581.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	25.04	10.82	42.21	18.5	13.09	15.99	20.59	22.01	21.44	24.6	22.11	12.84
Merged-chr6-70856142-3	chr6	70856051	70856251	+	940.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313918, intron 1 of 2)	Lx9|LINE|L1	11636.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	12.11	14.84	27.95	28.96	27.82	11.92	16.28	12.42	32.85	23.1	23.62	16.92
Merged-chr13-47038194-1	chr13	47038094	47038294	+	940.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016785, intron 3 of 8)	intron (NM_016785, intron 3 of 8)	5023.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	0.0	0.0	6.28	2.01	1.64	1.88	4.98	2.02	21.44	14.06	18.09	14.1
Merged-chr7-73559340-3	chr7	73559229	73559429	+	940.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-934.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	23.42	8.3	33.09	13.27	22.09	17.25	4.98	23.36	19.67	24.1	27.64	15.66
Merged-chr16-76363849-3	chr16	76363737	76363937	+	940.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9212.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.46	8.8	15.97	9.65	13.91	14.42	14.95	14.5	15.93	16.07	22.11	9.4
Merged-chr3-79158421-3	chr3	79158339	79158539	+	940.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-12564.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	13.73	10.31	17.68	16.89	34.36	48.92	29.9	24.79	12.59	46.7	44.22	16.92
Merged-chr11-87758777-7	chr11	87758578	87758778	+	940.3095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1723.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	3.23	8.05	13.69	7.24	6.95	11.29	2.99	6.2	16.92	12.55	13.57	5.64
Merged-chr10-127177965-3	chr10	127177898	127178098	+	940.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177615, exon 5 of 17)	exon (NM_177615, exon 5 of 17)	2647.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	14.13	15.09	13.12	7.64	22.5	20.38	8.3	11.55	12.98	24.6	18.59	9.4
Merged-chr17-64715470-2	chr17	64715364	64715564	+	940.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-51647.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	11.31	1.51	4.56	2.01	34.77	15.68	12.62	8.36	26.95	22.09	23.62	8.14
Merged-chr1-16518950-4	chr1	16518910	16519110	+	940.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347044, exon 1 of 14)	5' UTR (NM_001347044, exon 1 of 14)	105.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	13.73	10.06	6.85	3.22	15.14	18.19	18.27	20.41	20.85	20.08	22.11	17.86
Merged-chr13-102889092-3	chr13	102888987	102889187	+	940.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128832.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	20.19	17.36	19.97	28.56	11.05	11.92	15.94	22.29	16.72	6.53	10.55	16.6
Merged-chr11-70466406-3	chr11	70466311	70466511	+	940.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6427.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	18.17	14.09	13.69	12.47	21.68	26.03	10.3	12.11	31.47	29.12	32.66	14.41
Merged-chr1-135670565-3	chr1	135670460	135670660	+	940.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49503.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	12.11	13.83	9.7	16.89	21.68	26.97	14.95	19.85	16.13	17.07	25.12	23.18
Merged-chr13-73469635-3	chr13	73469533	73469733	+	940.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	2250.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	17.77	29.93	18.83	13.67	11.45	38.88	21.92	12.87	22.82	22.09	18.09	9.4
Merged-chr10-86947688-1	chr10	86947588	86947788	+	940.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	60254.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.85	6.54	6.28	4.83	8.59	15.68	10.63	12.81	4.13	10.04	9.55	4.07
Merged-chr14-103376949-3	chr14	103376859	103377059	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30159.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	13.33	9.31	13.12	21.32	23.32	16.93	20.93	29.38	33.44	20.59	32.66	16.29
Merged-chr13-60674499-3	chr13	60674367	60674567	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	72256.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	23.02	10.31	21.11	28.56	19.64	16.93	34.55	53.55	23.6	13.05	36.18	25.06
Merged-chrX-12080381-3	chrX	12080162	12080362	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175046, exon 1 of 14)	5' UTR (NM_175046, exon 1 of 14)	291.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	11.71	11.57	3.99	6.84	8.18	19.13	9.97	1.85	6.69	13.56	12.06	4.07
Merged-chr7-35124954-3	chr7	35124863	35125063	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5670.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	15.34	9.06	5.13	10.46	15.55	16.93	13.29	13.32	17.31	14.56	18.59	12.84
Merged-chr4-135314644-3	chr4	135314561	135314761	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38553.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	8.08	13.08	11.98	6.44	26.18	34.49	32.22	43.09	39.53	32.13	48.24	26.94
Merged-chr16-93142290-3	chr16	93142170	93142370	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210919.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	34.32	39.49	31.38	13.27	45.0	61.15	17.27	16.68	71.99	81.84	43.72	18.8
Merged-chr2-166235096-3	chr2	166234993	166235193	+	940.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38815.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	23.42	16.35	5.13	9.65	36.82	34.18	23.92	20.75	37.57	36.65	33.67	25.37
Merged-chr5-43853443-3	chr5	43853330	43853530	+	940.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15379.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	14.94	7.8	24.53	15.69	58.5	33.24	70.42	56.83	26.55	17.07	42.71	23.81
Merged-chr3-144693285-2	chr3	144693170	144693370	+	940.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	27065.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	1.62	9.81	7.99	5.23	15.14	10.35	16.61	23.8	18.29	23.6	27.64	17.54
Merged-chr2-129597496-4	chr2	129597325	129597525	+	940.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1963.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.67	6.04	2.28	8.04	5.32	10.35	14.28	2.61	7.47	11.55	8.04	5.95
Merged-chr10-59369645-2	chr10	59369532	59369732	+	940.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001316371, exon 14 of 15)	exon (NM_001316371, exon 14 of 15)	-34053.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	12.11	15.34	5.13	5.63	11.86	10.35	4.98	16.71	9.44	4.02	7.54	4.07
Merged-chr9-70650462-3	chr9	70650359	70650559	+	940.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	6715.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	22.21	4.28	13.69	16.09	14.73	14.11	4.65	17.55	26.75	13.05	10.55	15.66
Merged-chr5-125052910-3	chr5	125052862	125053062	+	940.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	49487.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	9.29	11.57	16.54	8.04	18.82	24.15	8.64	10.71	9.83	5.52	14.07	9.08
Merged-chr3-144679382-3	chr3	144679274	144679474	+	940.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	40961.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	19.79	14.09	27.95	22.52	37.64	25.4	28.9	48.7	13.96	9.54	14.07	8.14
Merged-chr8-108994591-3	chr8	108994495	108994695	+	940.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57735.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	9.69	11.07	5.13	4.83	16.77	20.07	12.95	9.62	17.9	7.03	29.14	5.01
Merged-chr2-166492022-3	chr2	166491913	166492113	+	940.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	44562.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	14.94	9.56	21.11	13.27	20.46	25.4	17.61	24.28	29.5	11.55	41.71	19.11
Merged-chr9-118913237-3	chr9	118913137	118913337	+	940.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13299.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	18.57	15.34	23.96	9.65	33.55	19.76	20.59	23.69	23.01	24.1	33.16	10.02
Merged-chr3-126771739-3	chr3	126771641	126771841	+	940.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 6 of 18)	intron (NM_001025438, intron 6 of 18)	171645.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	10.9	6.79	18.25	13.27	15.55	14.42	7.31	13.35	16.92	18.08	27.13	17.54
Merged-chr11-106994444-2	chr11	106994341	106994541	+	940.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010655, intron 3 of 10)	Lx8|LINE|L1	5084.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.06	3.77	7.42	8.85	11.45	13.17	6.64	10.51	35.8	44.19	38.19	28.19
Merged-chr2-122619698-2	chr2	122619593	122619793	+	940.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8416.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	31.9	16.6	14.26	13.27	39.27	33.87	14.95	24.81	2.75	5.02	2.01	1.25
Merged-chr11-105592086-3	chr11	105591978	105592178	+	940.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	2092.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	18.98	24.65	9.13	18.5	28.64	22.89	11.63	15.53	30.49	26.61	31.66	22.24
Merged-chr12-4160535-3	chr12	4160452	4160652	+	940.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	26399.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	6.06	4.02	6.85	18.5	19.64	9.41	12.95	19.18	17.11	19.58	15.58	11.59
Merged-chr13-90050030-3	chr13	90049920	90050120	+	940.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	39588.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	10.9	16.35	14.83	6.44	28.64	48.6	7.97	8.13	27.93	28.12	15.58	4.07
Merged-chr2-11426887-3	chr2	11426778	11426978	+	940.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-28378.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	8.48	5.28	13.69	19.31	16.36	29.16	29.23	37.51	15.74	21.59	29.14	10.65
Merged-chr11-29885373-3	chr11	29885281	29885481	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-59713.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	15.34	16.85	11.41	32.58	20.46	20.38	7.31	21.48	24.98	26.61	23.62	18.8
Merged-chr11-115051379-3	chr11	115051299	115051499	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172050)	TTS (NM_172050)	-3104.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	16.56	12.32	28.52	22.12	6.95	8.78	5.98	9.87	24.19	3.51	11.05	12.22
Merged-chr1-105906596-3	chr1	105906486	105906686	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83696.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	14.13	18.11	9.13	18.1	13.09	18.5	37.2	34.77	7.87	16.57	38.69	20.05
Merged-chr6-99401405-1	chr6	99401305	99401505	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	33940.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.42	5.03	11.41	7.24	1.64	1.88	6.64	9.76	4.92	3.51	6.53	3.45
Merged-chr13-81014071-1	chr13	81013971	81014171	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	49997.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.65	5.53	2.28	4.42	13.09	1.88	10.3	10.21	4.52	2.01	9.04	6.58
Merged-chr10-60290630-1	chr10	60290530	60290730	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6169.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.65	2.52	3.42	6.03	11.86	4.39	2.33	9.11	8.85	2.51	3.52	6.27
Merged-chr6-125166202-1	chr6	125166102	125166302	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	265.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	18.98	15.09	8.56	15.28	14.32	14.11	9.63	12.81	23.8	25.61	38.69	18.8
Merged-chr2-45106565-2	chr2	45106565	45106765	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	3612.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.25	4.28	6.85	4.83	4.91	18.19	3.32	3.59	6.1	9.54	15.07	3.45
Merged-chr10-25319232-1	chr10	25319132	25319332	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20069.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.63	2.77	10.27	5.63	8.59	2.2	3.99	8.27	4.92	8.54	4.52	5.33
Merged-chr12-79007210-2	chr12	79007126	79007326	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178745)	promoter-TSS (NM_178745)	51.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	13.73	9.06	0.0	11.66	15.55	15.05	11.63	7.99	17.7	9.54	13.06	7.52
Merged-chr14-50825569-2	chr14	50825469	50825669	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009351, intron 51 of 54)	intron (NM_009351, intron 51 of 54)	17653.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	16.15	4.78	14.83	14.88	19.23	19.13	13.62	13.01	0.98	2.01	0.0	4.39
Merged-chr9-99107854-2	chr9	99107767	99107967	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	32344.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.63	9.56	9.7	2.82	20.46	16.93	14.28	11.92	17.9	8.54	28.14	10.96
Merged-chr8-72281781-2	chr8	72281687	72281887	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37275.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.21	5.79	3.99	4.42	14.32	9.09	13.62	14.58	8.06	5.52	14.07	15.66
Merged-chr16-42180180-1	chr16	42180080	42180280	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001361282, exon 11 of 11)	3' UTR (NM_001361282, exon 11 of 11)	123289.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	1.62	0.5	0.0	2.41	15.14	10.66	11.29	14.61	2.75	4.52	2.01	1.25
Merged-chr7-5016241-3	chr7	5016146	5016346	+	939.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025324, intron 1 of 1)	MIRb|SINE|MIR	738.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	24.23	15.59	8.56	7.64	23.32	36.69	7.64	10.07	27.93	18.08	12.06	14.1
Merged-chr19-12002333-3	chr19	12002226	12002426	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34414.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	12.52	18.86	27.95	15.69	12.27	21.01	13.62	11.47	14.16	11.05	22.11	10.65
Merged-chr11-6562539-3	chr11	6562456	6562656	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190344, intron 2 of 9)	intron (NM_001190344, intron 2 of 9)	2373.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	45.63	32.45	37.08	49.47	32.73	22.26	23.92	45.03	11.21	10.04	14.57	13.16
Merged-chr16-55526663-3	chr16	55526547	55526747	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31916.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	12.52	8.05	22.25	11.66	9.0	16.31	15.28	22.35	21.64	24.6	36.68	14.41
Merged-chr15-57970363-3	chr15	57970263	57970463	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081396)	TTS (NM_001081396)	-15540.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	27.86	17.1	11.41	14.88	15.55	26.97	10.3	17.44	27.73	14.56	43.72	14.72
Merged-chr11-21421780-3	chr11	21421664	21421864	+	939.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50497.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	7.27	9.56	12.55	26.14	23.73	22.58	17.27	23.83	11.8	4.02	22.11	14.72
Merged-chr13-47224108-3	chr13	47224045	47224245	+	939.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30142.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.67	8.05	0.0	4.42	21.68	24.77	10.63	7.35	45.04	40.67	15.07	6.89
Merged-chr11-108445458-2	chr11	108445343	108445543	+	939.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	20177.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	12.11	5.53	2.28	4.83	8.59	15.37	9.97	10.57	14.95	13.56	23.11	13.16
Merged-chr16-30390741-3	chr16	30390653	30390853	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2223.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	21.4	10.82	8.56	15.69	33.14	17.87	15.94	19.51	45.63	21.59	28.14	18.48
Merged-chr2-45111753-3	chr2	45111660	45111860	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-500.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	18.98	14.84	15.4	1.21	23.73	39.82	9.63	8.21	32.26	29.62	33.16	12.84
Merged-chr6-35253183-3	chr6	35253087	35253287	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027875, intron 1 of 2)	intron (NR_027875, intron 1 of 2)	455.0	NR_027875	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	17.77	15.85	13.12	12.87	32.32	39.51	15.28	27.73	40.91	46.19	32.16	23.81
Merged-chr1-133163918-3	chr1	133163821	133164021	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32755.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	28.67	12.07	12.55	21.72	17.18	18.5	10.3	24.56	12.98	9.04	31.66	18.48
Merged-chr2-14262327-3	chr2	14262244	14262444	+	939.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 6 of 29)	intron (NM_008625, intron 6 of 29)	1341.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	14.94	4.53	21.11	23.73	19.64	16.31	33.88	33.5	11.41	12.55	22.11	14.72
Merged-chr5-72224606-3	chr5	72224495	72224695	+	939.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21252.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	15.34	10.31	7.99	14.88	9.41	11.29	11.29	16.21	13.37	6.03	22.61	10.65
Merged-chr11-40855969-3	chr11	40855865	40856065	+	939.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-100679.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	16.15	10.31	17.68	24.53	14.32	13.48	17.27	19.46	21.44	16.57	30.15	8.77
Merged-chr1-75251727-3	chr1	75251598	75251798	+	939.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359281, intron 19 of 22)	intron (NM_001359281, intron 19 of 22)	12073.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	11.71	14.34	10.84	12.47	25.36	16.31	11.96	17.44	14.75	25.11	13.57	8.46
Merged-chr17-23676786-3	chr17	23676650	23676850	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013749, intron 1 of 3)	CpG	699.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	11.71	11.32	7.42	7.64	14.32	18.81	5.31	9.14	20.46	17.07	11.05	7.52
Merged-chr12-57464859-2	chr12	57464768	57464968	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81243.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	13.73	10.82	26.81	24.53	11.86	23.2	24.91	26.78	0.0	0.0	1.51	0.0
Merged-chr18-56699201-3	chr18	56699097	56699297	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	9.29	19.37	29.09	12.47	19.64	20.7	19.93	34.68	71.79	49.71	108.03	61.71
Merged-chr7-30917418-3	chr7	30917312	30917512	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-2490.0	NM_010758	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	7.67	9.81	21.68	2.82	13.5	7.53	7.31	11.16	19.87	8.03	15.07	12.22
Merged-chr2-155402157-1	chr2	155402057	155402257	+	939.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019825, intron 11 of 13)	intron (NM_019825, intron 11 of 13)	20301.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.65	4.78	7.42	9.25	24.55	14.11	10.96	23.61	4.92	11.55	3.01	4.07
Merged-chr16-95836222-3	chr16	95836133	95836333	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	62480.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	14.13	10.56	37.65	4.02	15.96	22.89	9.3	5.66	27.54	27.11	43.72	15.98
Merged-chr14-54392709-3	chr14	54392603	54392803	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	RSINE1|SINE|B4	16769.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	23.42	17.86	38.22	47.46	34.36	31.98	70.42	79.93	15.74	8.54	9.04	12.53
Merged-chr11-50286562-3	chr11	50286471	50286671	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	5765.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	16.96	16.35	14.83	13.67	34.77	25.09	11.63	18.28	32.26	24.1	25.12	7.21
Merged-chr4-10962590-3	chr4	10962472	10962672	+	939.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45047.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	7.67	20.12	14.26	2.01	16.77	21.95	14.28	11.86	17.51	15.57	11.56	7.52
Merged-chr2-6442523-3	chr2	6442436	6442636	+	939.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001080548, exon 15 of 15)	3' UTR (NM_001080548, exon 15 of 15)	89800.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.46	7.8	22.25	23.33	9.0	9.72	18.6	20.61	15.34	4.02	15.07	14.41
Merged-chr6-31123528-3	chr6	31123447	31123647	+	939.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-60454.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	12.11	6.54	17.11	11.66	12.27	16.62	13.95	19.63	18.29	20.59	22.11	14.41
Merged-chr11-98026710-2	chr11	98026604	98026804	+	939.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-6.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	23.82	19.62	16.54	13.67	11.05	16.93	4.65	10.35	28.52	37.16	17.59	16.92
Merged-chr4-45514328-4	chr4	45514295	45514495	+	939.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	16433.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	10.09	8.05	6.28	11.66	9.41	11.6	12.29	14.78	14.36	16.07	12.56	17.54
Merged-chr9-100376828-2	chr9	100376732	100376932	+	939.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109641.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	11.71	9.06	19.4	16.89	19.23	24.15	14.62	20.66	7.67	1.51	16.58	7.21
Merged-chr2-120309402-3	chr2	120309299	120309499	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024145, intron 7 of 19)	intron (NM_001024145, intron 7 of 19)	4766.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	14.94	11.57	19.97	17.7	17.59	11.29	6.64	18.56	13.37	9.54	25.12	16.29
Merged-chr9-94605156-3	chr9	94605050	94605250	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64742.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	19.79	17.36	9.7	41.83	17.18	18.5	10.96	23.61	29.7	27.11	31.66	27.57
Merged-chr19-5274320-3	chr19	5274223	5274423	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030109, exon 21 of 21)	3' UTR (NM_030109, exon 21 of 21)	-1204.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	11.31	12.83	15.97	16.49	16.77	15.37	9.3	14.24	19.87	20.08	28.14	19.11
Merged-chr1-36789632-3	chr1	36789518	36789718	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	10634.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	34.73	38.23	56.48	26.95	11.86	12.54	8.3	16.18	12.59	3.51	27.64	13.47
Merged-chr9-40834838-3	chr9	40834723	40834923	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33550.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	9.69	10.56	18.83	18.1	29.05	18.5	23.25	20.36	33.24	34.65	28.64	22.87
Merged-chr2-60865167-3	chr2	60865074	60865274	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	16264.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	24.23	20.12	15.97	11.66	23.73	43.9	18.93	24.9	18.49	25.61	36.18	13.16
Merged-chr4-97924071-3	chr4	97923962	97924162	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	146436.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	10.9	14.84	21.68	12.07	18.0	10.35	20.59	18.56	30.09	19.08	28.14	13.78
Merged-chr4-56055275-3	chr4	56055175	56055375	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-522800.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	18.57	22.39	30.8	20.11	18.41	10.66	15.28	21.34	29.9	12.55	27.13	13.47
Merged-chr8-26979211-3	chr8	26979123	26979323	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1887.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	16.96	10.31	6.85	11.26	8.59	11.29	9.97	12.95	15.54	21.09	25.63	12.53
Merged-chr10-37397639-5	chr10	37397520	37397720	+	939.703003	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258694.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.23	11.57	9.7	12.47	9.82	6.9	15.94	13.79	10.03	15.57	10.05	9.08
Merged-chr10-81338773-1	chr10	81338673	81338873	+	939.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148951, intron 4 of 5)	RSINE1|SINE|B4	4493.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	6.46	4.78	9.13	3.22	11.05	10.35	4.98	10.79	8.65	6.53	10.05	11.28
Merged-chr2-91485909-3	chr2	91485804	91486004	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172668, exon 17 of 38)	exon (NM_172668, exon 17 of 38)	28373.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	11.31	18.36	20.54	8.45	29.05	29.16	15.94	32.52	24.59	24.1	34.17	21.3
Merged-chr10-96280420-1	chr10	96280320	96280520	+	939.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54213.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	10.09	2.01	8.56	3.22	13.09	12.23	9.3	12.06	8.46	8.03	6.03	8.14
Merged-chr4-16112648-3	chr4	16112544	16112744	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50999.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	30.69	37.48	23.96	11.66	13.5	33.24	13.95	13.49	54.48	41.67	39.7	11.28
Merged-chr4-47262178-3	chr4	47262095	47262295	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	54183.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	6.06	15.59	18.83	12.07	23.32	21.01	9.3	18.73	27.14	12.55	24.62	12.22
Merged-chr11-94550351-3	chr11	94550246	94550446	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1139.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	34.32	39.74	33.09	33.78	11.45	24.77	13.29	14.83	14.16	42.18	30.15	6.58
Merged-chr12-84876973-3	chr12	84876882	84877082	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013589)	promoter-TSS (NM_013589)	-487.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	30.28	13.83	18.83	22.52	34.36	42.65	9.97	30.7	35.6	35.65	33.67	18.8
Merged-chr6-32544281-2	chr6	32544176	32544376	+	939.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	33135.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.67	5.03	1.71	13.67	12.27	13.48	15.28	19.01	10.42	11.55	17.08	10.96
Merged-chr3-19183621-2	chr3	19183527	19183727	+	939.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3693.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.46	7.55	4.56	13.67	15.55	9.72	10.96	14.41	23.8	13.56	17.08	13.16
Merged-chr4-109255374-2	chr4	109255266	109255466	+	939.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285895)	TTS (NM_001285895)	19734.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	7.27	4.28	5.7	0.8	5.73	10.03	11.29	6.03	11.6	16.07	9.04	12.84
Merged-chr6-29252316-3	chr6	29252246	29252446	+	939.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20142.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	25.84	13.33	42.78	15.28	17.18	10.98	9.97	8.21	37.37	19.08	40.7	8.77
Merged-chr13-119713280-3	chr13	119713171	119713371	+	939.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	22920.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	17.77	6.04	13.12	24.53	22.91	21.64	17.27	39.17	23.21	29.62	25.63	21.62
Merged-chr2-150648120-3	chr2	150648018	150648218	+	939.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-19376.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	18.57	17.86	14.26	24.13	15.96	12.86	17.61	34.77	14.75	15.57	25.63	13.47
Merged-chr4-58463183-3	chr4	58463087	58463287	+	939.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-22089.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	17.36	23.9	13.69	21.72	15.96	24.46	15.61	18.25	33.63	22.59	51.25	13.78
Merged-chr8-103588927-3	chr8	103588821	103589021	+	939.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14878.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	8.48	14.59	17.11	13.27	41.32	28.22	24.58	54.34	35.4	33.64	51.25	27.88
Merged-chr8-105596813-5	chr8	105596642	105596842	+	939.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8487.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	11.31	18.11	13.69	10.05	10.23	13.17	11.96	12.5	18.88	22.09	19.6	11.59
Merged-chr14-51064825-5	chr14	51064720	51064920	+	939.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Pro-CCY|tRNA|tRNA	6622.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	40.78	35.97	17.68	40.22	40.5	31.36	24.58	15.06	55.27	62.26	49.24	35.4
Merged-chr9-58231946-3	chr9	58231868	58232068	+	939.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	10818.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	16.96	13.83	15.4	7.64	13.09	19.76	10.96	16.71	25.57	14.56	24.62	15.66
Merged-chrX-73342627-3	chrX	73342529	73342729	+	939.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031494)	promoter-TSS (NM_031494)	8.0	NM_001160229	27081.0	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	13.73	8.55	24.53	25.34	22.91	22.58	23.92	20.55	22.23	28.62	14.57	13.47
Merged-chr10-68759412-3	chr10	68759293	68759493	+	939.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	35647.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	29.88	10.31	12.55	14.88	21.68	24.46	18.93	25.88	38.75	52.22	44.22	12.22
Merged-chr6-58937481-3	chr6	58937382	58937582	+	939.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 17 of 17)	RLTR40|LTR|ERVK	-30356.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	12.11	6.79	19.97	18.5	11.45	19.13	18.93	35.05	13.18	16.57	25.63	16.6
Merged-chr2-152437678-3	chr2	152437586	152437786	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110368, intron 6 of 10)	intron (NR_110368, intron 6 of 10)	22099.0	NR_110368	228778.0	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	10.09	7.8	21.11	6.84	13.09	15.37	14.95	8.16	19.47	17.57	18.09	6.89
Merged-chr2-170217700-3	chr2	170217620	170217820	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	27.86	9.81	23.39	12.07	20.86	31.67	9.97	22.4	29.9	20.08	17.59	13.16
Merged-chr4-141651495-3	chr4	141651386	141651586	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12629.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	11.31	9.06	17.11	22.52	34.77	17.87	16.28	36.0	19.28	24.1	19.09	22.24
Merged-chr7-28808386-3	chr7	28808301	28808501	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2489.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	11.31	14.84	20.54	4.42	11.45	13.17	13.62	15.08	18.49	11.55	16.08	7.52
Merged-chr19-60588865-1	chr19	60588765	60588965	+	939.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7842.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.4	0.5	0.0	2.41	0.0	1.25	1.33	0.95	17.9	14.56	21.61	14.1
Merged-chr19-5661649-2	chr19	5661520	5661720	+	939.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164480, exon 2 of 17)	5' UTR (NM_001164480, exon 2 of 17)	2087.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	6.06	8.55	6.28	7.64	10.23	7.21	8.97	8.55	12.19	14.06	15.07	12.53
Merged-chr16-4559968-4	chr16	4559897	4560097	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031182)	promoter-TSS (NM_031182)	-277.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	18.98	22.64	8.56	7.64	11.05	22.58	16.94	9.9	26.16	20.59	14.57	17.54
Merged-chr5-120509027-3	chr5	120508915	120509115	+	939.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2177.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	28.67	37.48	28.52	10.86	24.55	33.55	17.94	21.31	26.16	21.09	44.22	19.74
Merged-chr18-60978478-3	chr18	60978376	60978576	+	939.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14922.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	15.75	18.36	14.83	16.89	19.23	12.86	16.61	12.56	11.21	14.06	24.12	12.84
Merged-chr5-143056751-3	chr5	143056669	143056869	+	939.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56251.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	35.94	10.82	42.78	26.14	22.09	17.87	23.25	27.08	26.16	18.08	12.06	18.8
Merged-chr13-52822387-3	chr13	52822306	52822506	+	939.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65201.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	10.9	10.56	27.38	6.44	30.27	36.69	38.86	35.44	25.57	36.15	34.17	21.3
Merged-chr3-116081923-3	chr3	116081846	116082046	+	939.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47742.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	21.0	17.86	9.13	12.07	16.77	19.76	28.23	29.8	19.47	31.13	20.1	25.37
Merged-chr15-99122685-4	chr15	99122552	99122752	+	939.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-4193.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	6.86	7.55	1.14	2.82	22.5	32.3	19.93	6.98	28.52	29.62	24.62	17.86
Merged-chr2-48950011-3	chr2	48949879	48950079	+	939.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	102.0	NR_149355	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	6.06	11.82	18.25	7.24	13.91	12.86	6.31	10.46	13.57	18.08	22.61	13.16
Merged-chr13-21446961-3	chr13	21446870	21447070	+	939.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151504)	TTS (NR_151504)	1810.0	NR_035441	100316752.0		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	20.59	19.87	38.79	22.93	16.77	10.35	22.92	28.65	14.36	23.1	17.59	8.46
Merged-chr1-176818337-3	chr1	176818247	176818447	+	939.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	3687.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	23.02	9.06	14.26	17.7	19.23	25.09	11.63	31.65	34.42	10.54	31.66	10.34
Merged-chr15-81360466-3	chr15	81360365	81360565	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011399, intron 1 of 8)	intron (NM_011399, intron 1 of 8)	300.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	12.52	9.81	4.56	4.83	15.55	16.93	5.98	3.2	16.92	21.59	11.56	5.64
Merged-chr6-124729523-3	chr6	124729424	124729624	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	B1F2|SINE|Alu	3630.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	15.34	13.83	13.69	9.65	22.09	17.87	10.96	11.75	28.32	19.08	18.59	13.16
Merged-chr18-46409150-1	chr18	46409050	46409250	+	939.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56666.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.62	0.0	2.28	0.8	1.23	2.2	5.31	2.61	9.64	14.56	20.1	13.47
Merged-chr2-173538184-3	chr2	173538089	173538289	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15597.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	9.29	15.59	11.41	12.87	20.86	22.58	14.28	13.09	17.9	23.6	25.12	20.05
Merged-chr5-140609778-3	chr5	140609674	140609874	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	2433.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	17.36	14.59	7.99	8.04	15.55	16.31	15.94	24.36	11.6	15.57	8.04	8.46
Merged-chr11-77786376-3	chr11	77786238	77786438	+	939.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	9103.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	10.5	15.34	18.83	17.29	26.59	21.64	26.24	26.8	9.83	28.12	16.08	17.23
Merged-chr7-80011687-3	chr7	80011569	80011769	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-13145.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	19.79	20.63	30.8	22.12	16.77	26.65	15.61	8.64	30.88	34.65	30.65	17.54
Merged-chr3-7496754-3	chr3	7496652	7496852	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6674.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	18.57	19.37	14.83	25.34	12.27	19.13	6.64	24.28	28.13	20.08	23.62	17.54
Merged-chr1-58770356-3	chr1	58770262	58770462	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25012.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	13.33	22.89	11.41	18.9	29.86	24.15	13.95	14.94	23.21	24.1	14.07	13.16
Merged-chr10-34280805-3	chr10	34280706	34280906	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1384.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	14.13	26.41	14.26	15.28	20.05	34.18	21.26	15.95	31.86	29.62	35.17	19.11
Merged-chr2-14233114-3	chr2	14233023	14233223	+	939.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	L2c|LINE|L2	3709.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	19.38	16.6	17.11	17.29	12.68	19.76	17.27	28.68	38.55	15.57	11.56	14.72
Merged-chr2-103842531-2	chr2	103842421	103842621	+	939.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31899.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	12.11	9.56	15.4	14.88	12.68	11.92	2.33	13.4	6.29	2.51	11.56	6.27
Merged-chr18-60523477-3	chr18	60523386	60523586	+	939.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2668.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	55.72	34.46	47.92	62.34	61.77	48.6	45.51	62.36	12.98	7.03	14.57	8.14
Merged-chr13-94162708-3	chr13	94162601	94162801	+	939.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	MTD|LTR|ERVL-MaLR	104905.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	12.11	10.31	20.54	34.99	21.68	15.99	30.23	31.71	24.78	14.56	22.61	10.96
Merged-chr6-129088744-3	chr6	129088642	129088842	+	939.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	12161.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	24.63	14.59	24.53	10.46	36.0	25.71	24.58	13.74	24.39	27.11	20.6	14.1
Merged-chr16-91612724-3	chr16	91612642	91612842	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6257.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	10.5	8.55	4.56	3.22	15.96	14.42	7.97	8.97	34.03	38.16	39.7	21.62
Merged-chr4-58040257-3	chr4	58040152	58040352	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31128.0	NM_026132	67402.0	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	14.94	17.1	21.11	18.9	15.14	21.32	15.94	25.85	24.59	28.62	13.57	15.66
Merged-chr5-121596340-3	chr5	121596233	121596433	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2509.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	20.59	14.84	9.7	14.48	13.09	29.79	10.96	13.46	16.13	18.08	19.09	12.22
Merged-chr5-120777702-3	chr5	120777615	120777815	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145226)	promoter-TSS (NM_145226)	-56.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	16.56	9.56	36.51	16.89	29.86	20.38	9.63	27.06	25.96	21.59	33.16	18.48
Merged-chr17-31077676-3	chr17	31077564	31077764	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	19970.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	21.0	12.07	11.98	16.89	39.68	59.58	46.84	77.19	21.44	23.6	19.09	11.9
Merged-chr11-108225440-3	chr11	108225347	108225547	+	939.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	B4|SINE|B4	118441.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	16.56	17.36	14.26	12.87	13.5	11.92	4.98	10.99	42.68	17.57	37.18	13.47
Merged-chr4-108068117-3	chr4	108068025	108068225	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19232.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	16.56	10.06	31.38	19.71	25.77	14.42	13.62	18.45	11.21	13.05	15.07	8.77
Merged-chr1-167339589-3	chr1	167339491	167339691	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-10400.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	9.29	13.83	15.4	19.31	17.59	18.81	24.58	34.26	17.51	7.53	16.58	20.68
Merged-chr8-126882469-3	chr8	126882371	126882571	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	33451.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	23.02	20.12	12.55	6.03	29.05	61.46	20.26	13.15	46.22	36.15	32.16	15.35
Merged-chr1-152585736-3	chr1	152585627	152585827	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	39490.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	13.73	9.81	19.97	12.07	12.68	19.44	14.62	26.86	11.41	17.07	24.12	10.96
Merged-chr15-87074773-3	chr15	87074684	87074884	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-469515.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	11.31	14.84	12.55	17.7	38.86	18.19	22.26	35.02	38.94	35.15	27.64	20.99
Merged-chr10-22743726-3	chr10	22743623	22743823	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12276.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	46.84	30.43	49.06	34.19	24.14	24.77	26.91	19.23	14.75	7.53	16.58	10.96
Merged-chr7-122821393-3	chr7	122821306	122821506	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149053.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	14.54	13.33	10.27	13.67	25.36	17.56	18.93	13.88	33.04	26.11	47.74	15.98
Merged-chr13-113755989-2	chr13	113755894	113756094	+	939.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-38514.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	41.19	37.23	59.33	44.64	5.73	5.02	4.65	17.78	22.23	13.05	16.08	17.23
Merged-chr11-3194226-3	chr11	3194120	3194320	+	939.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030207)	promoter-TSS (NM_030207)	-757.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	14.94	10.56	4.56	11.26	32.32	4.7	12.62	10.91	15.74	17.57	11.05	19.42
Merged-chr8-117362161-3	chr8	117362058	117362258	+	939.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12988.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	14.94	11.07	6.28	14.48	18.41	11.6	9.97	12.31	15.14	5.52	17.59	8.14
Merged-chr6-50375844-3	chr6	50375745	50375945	+	939.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	6992.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	13.33	10.82	14.83	15.28	14.73	13.48	11.96	14.64	25.77	19.58	27.13	16.6
Merged-chr5-143472175-3	chr5	143472070	143472270	+	939.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7677.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	13.33	8.8	30.8	21.32	29.86	16.31	14.62	25.6	22.03	27.62	19.6	16.92
Merged-chr10-13513529-3	chr10	13513424	13513624	+	939.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025799, intron 6 of 6)	intron (NM_025799, intron 6 of 6)	12496.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	31.09	18.61	32.52	25.34	11.86	15.68	9.97	22.46	32.85	19.58	30.15	7.83
Merged-chr3-55520693-1	chr3	55520593	55520793	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357475, intron 16 of 16)	intron (NM_001357475, intron 16 of 16)	58965.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	4.85	4.02	0.57	4.02	2.45	5.02	7.97	7.07	7.67	4.02	4.02	0.31
Merged-chr10-28463941-1	chr10	28463841	28464041	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-204419.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	5.65	6.04	7.99	10.46	7.77	15.37	11.29	24.79	2.36	5.52	6.53	3.13
Merged-chr4-46088008-2	chr4	46087920	46088120	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48798.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	10.5	7.04	6.28	6.03	15.96	11.92	13.62	12.98	2.95	8.03	9.55	4.39
Merged-chr15-63923676-1	chr15	63923576	63923776	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_029414, intron 9 of 10)	intron (NR_029414, intron 9 of 10)	9215.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	2.42	3.27	7.42	7.64	1.64	3.45	8.3	2.47	3.93	4.02	4.02	7.52
Merged-chr8-111299436-3	chr8	111299308	111299508	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146218, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	814.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	14.94	10.31	14.83	15.28	9.82	17.25	9.97	12.95	20.26	14.06	13.57	9.71
Merged-chr8-85025198-2	chr8	85025099	85025299	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	88.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	20.59	36.47	24.53	19.31	35.18	27.59	8.97	9.06	14.16	13.05	14.07	14.1
Merged-chr3-149624032-1	chr3	149623932	149624132	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	349295.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.62	0.75	0.0	5.23	3.27	10.03	3.32	9.73	6.49	1.51	5.02	3.13
Merged-chr1-97663061-3	chr1	97662969	97663169	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1051.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	15.34	9.31	24.53	23.73	31.09	20.07	24.25	30.9	23.41	13.05	21.61	6.27
Merged-chr13-34088450-2	chr13	34088355	34088555	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046184, intron 4 of 4)	intron (NR_046184, intron 4 of 4)	-10447.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	6.86	14.84	18.25	6.44	10.64	13.48	3.65	3.48	7.67	2.01	4.52	5.01
Merged-chr17-33956243-1	chr17	33956143	33956343	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	153.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	10.5	9.06	4.56	4.83	18.82	7.84	7.97	7.4	16.92	8.54	11.56	15.04
Merged-chr1-21161938-1	chr1	21161838	21162038	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56637.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	4.44	8.8	5.13	7.24	5.32	16.31	11.96	13.49	2.56	3.01	3.52	2.82
Merged-chr2-71377633-3	chr2	71377540	71377740	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10086.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	14.13	17.1	9.7	12.87	24.96	24.46	20.93	22.26	31.67	30.63	29.14	28.19
Merged-chr4-109476220-1	chr4	109476120	109476320	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013876, exon 1 of 3)	exon (NM_013876, exon 1 of 3)	285.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	12.52	8.05	7.42	16.09	8.18	7.84	15.28	12.59	17.7	10.04	16.08	27.25
Merged-chr18-9486607-3	chr18	9486485	9486685	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36431.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	15.34	12.07	5.7	21.72	17.18	18.19	25.24	42.11	24.0	14.06	14.07	12.84
Merged-chr4-129840254-1	chr4	129840154	129840354	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008974, intron 2 of 5)	intron (NM_008974, intron 2 of 5)	19546.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.85	3.02	6.85	2.82	9.41	3.45	2.99	6.5	3.54	5.02	2.51	1.57
Merged-chr17-34952604-6	chr17	34952466	34952666	+	938.986084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027943)	promoter-TSS (NR_027943)	-95.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	13.33	11.57	5.7	9.65	9.82	16.62	18.6	7.65	12.98	20.08	9.04	6.89
Merged-chr17-15830922-3	chr17	15830788	15830988	+	938.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4302.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	11.71	9.31	13.69	10.05	18.41	10.66	7.31	12.48	15.93	12.05	11.56	11.28
Merged-chr8-25096994-3	chr8	25096892	25097092	+	938.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	4819.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	22.61	14.09	12.55	12.07	18.0	22.58	10.63	15.28	26.75	28.62	15.07	16.6
Merged-chr15-6622711-3	chr15	6622601	6622801	+	938.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	MER77|LTR|ERVL	31602.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	21.4	17.86	16.54	7.24	11.05	29.48	6.98	7.93	28.32	30.13	24.12	10.65
Merged-chrX-151046946-3	chrX	151046872	151047072	+	938.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008001)	promoter-TSS (NM_008001)	-198.0	NM_008001	14163.0	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	8.88	16.85	30.23	18.1	11.86	18.81	19.93	19.09	15.74	21.09	20.1	16.29
Merged-chr4-41773687-2	chr4	41773588	41773788	+	938.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154591, intron 2 of 4)	CpG-9830	413.0	NM_001361246	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	2.42	4.78	11.41	8.45	15.96	13.17	14.62	10.32	57.43	77.32	97.98	52.32
Merged-chr13-28959713-2	chr13	28959647	28959847	+	938.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6048.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	12.92	11.07	3.42	11.26	17.59	11.92	11.96	12.7	10.82	4.52	3.52	5.95
Merged-chr2-119873067-6	chr2	119872935	119873135	+	938.9027710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-24193.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	12.52	6.29	3.99	8.45	9.41	12.86	14.62	11.3	7.28	10.54	10.05	14.1
Merged-chr11-8706128-3	chr11	8706064	8706264	+	938.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41629.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.44	2.77	21.68	28.56	18.82	22.89	11.63	20.41	24.59	21.59	21.1	23.18
Merged-chr4-57958378-3	chr4	57958266	57958466	+	938.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1955.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	16.56	13.33	11.98	12.07	27.0	15.99	11.96	19.07	30.68	25.61	23.62	14.41
Merged-chr2-45100878-3	chr2	45100781	45100981	+	938.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9396.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	15.75	7.04	13.12	8.85	20.05	28.22	5.65	11.19	24.59	23.1	19.6	16.6
Merged-chr11-94031448-2	chr11	94031353	94031553	+	938.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027569, intron 2 of 28)	intron (NM_027569, intron 2 of 28)	-12752.0	NM_001025430	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.06	5.03	2.28	3.62	11.86	21.64	5.98	12.93	17.31	9.04	6.53	14.1
Merged-chr8-66495916-2	chr8	66495820	66496020	+	938.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9390.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.46	4.78	4.56	7.64	16.77	13.48	3.65	11.89	16.33	15.57	19.09	10.65
Merged-chr15-68058805-3	chr15	68058710	68058910	+	938.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	200046.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	11.31	9.06	25.1	22.93	29.05	26.03	45.84	59.41	35.99	14.06	37.69	19.11
Merged-chr14-61666072-3	chr14	61665970	61666170	+	938.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	16303.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	32.3	14.84	19.4	20.51	17.59	18.5	21.59	17.75	17.51	9.54	22.11	12.84
Merged-chr2-24367136-3	chr2	24367044	24367244	+	938.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-531.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	27.05	13.33	8.56	20.51	13.5	21.64	7.97	13.46	31.27	20.08	23.62	20.36
Merged-chr12-80083355-3	chr12	80083253	80083453	+	938.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29660.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	22.61	7.04	12.55	16.09	21.27	22.89	21.59	30.45	19.67	18.08	32.16	19.42
Merged-chr17-57194106-3	chr17	57194013	57194213	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019418)	promoter-TSS (NM_019418)	68.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	9.29	17.36	20.54	14.88	14.73	19.76	13.29	17.41	15.54	13.05	19.09	15.04
Merged-chr16-20610716-3	chr16	20610625	20610825	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	36.0	NM_001357404	208624.0	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	18.17	17.36	6.28	11.26	10.64	11.92	8.3	10.74	18.1	17.57	15.58	15.98
Merged-chr5-53809613-3	chr5	53809500	53809700	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144517)	promoter-TSS (NM_144517)	-27.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	21.4	9.06	8.56	12.07	20.05	21.64	17.27	27.14	31.67	37.66	62.81	25.06
Merged-chr5-23969088-3	chr5	23968980	23969180	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	61232.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	14.94	19.12	18.25	19.31	9.0	9.41	9.63	15.06	19.87	29.12	30.15	1.25
Merged-chr7-83814316-3	chr7	83814209	83814409	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19470.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	21.0	17.61	26.81	19.71	13.09	14.74	26.91	27.87	10.62	16.07	20.1	12.22
Merged-chr11-68475845-3	chr11	68475719	68475919	+	938.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 3 of 18)	intron (NM_177320, intron 3 of 18)	-27200.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	23.02	16.35	13.12	10.05	20.46	30.1	14.28	13.23	21.64	23.6	22.61	8.77
Merged-chr17-56010897-3	chr17	56010793	56010993	+	938.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026530, intron 3 of 12)	intron (NM_026530, intron 3 of 12)	1692.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	12.92	9.31	13.12	3.22	9.0	14.42	4.32	7.85	20.65	19.58	9.04	10.96
Merged-chr11-29318889-2	chr11	29318786	29318986	+	938.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-55286.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	5.65	5.53	13.69	8.85	20.46	29.16	32.88	32.72	18.29	12.05	34.67	14.72
Merged-chr17-83081731-4	chr17	83081571	83081771	+	938.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3446.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	4.85	1.76	0.57	3.62	14.73	12.86	5.31	3.87	7.08	3.51	11.05	6.58
Merged-chr1-9953111-3	chr1	9953013	9953213	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8995.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	25.44	15.09	10.27	20.51	17.59	25.4	13.29	36.65	30.09	14.06	32.66	15.66
Merged-chr17-81669327-3	chr17	81669238	81669438	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69049.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	8.48	14.84	29.66	14.88	12.27	13.17	20.59	22.26	14.16	10.04	19.6	14.41
Merged-chr6-53759785-3	chr6	53759677	53759877	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Eulor8|DNA|TcMar?	61048.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	16.15	12.07	11.41	12.07	20.46	17.87	18.27	23.89	34.03	33.14	47.23	21.3
Merged-chr5-24069127-3	chr5	24069036	24069236	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31454.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	13.33	17.36	13.12	26.55	15.96	16.93	20.26	33.11	21.44	17.07	46.23	16.92
Merged-chr15-98892343-3	chr15	98892242	98892442	+	938.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6198.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	16.96	14.09	22.82	6.84	14.32	17.87	6.64	12.11	20.65	29.62	20.6	16.29
Merged-chr11-3197818-3	chr11	3197804	3198004	+	938.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4441.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	8.48	12.58	4.56	6.03	10.64	7.84	13.62	3.64	10.42	15.57	17.59	19.11
Merged-chr11-87751209-3	chr11	87751100	87751300	+	938.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5664.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	17.77	22.39	15.4	14.08	26.59	20.7	6.64	16.54	32.85	25.61	31.66	13.47
Merged-chr15-99817530-3	chr15	99817432	99817632	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	2617.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	31.5	34.71	14.83	29.36	30.27	26.03	12.95	13.35	49.57	43.18	41.71	35.4
Merged-chr13-20292506-3	chr13	20292409	20292609	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-180481.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	18.57	6.54	15.97	17.29	15.96	21.01	19.6	18.67	18.1	17.07	15.58	10.65
Merged-chr10-77279045-3	chr10	77278933	77279133	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19733.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	5.65	10.31	5.7	13.67	22.5	23.52	17.94	19.96	29.9	18.08	27.13	15.98
Merged-chr2-165285815-3	chr2	165285716	165285916	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1971.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	23.42	16.6	23.39	12.47	29.86	33.55	10.96	22.96	31.08	20.59	16.08	20.99
Merged-chr18-41949366-3	chr18	41949263	41949463	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029942, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1831.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	18.98	6.79	14.26	16.89	26.18	21.32	36.87	42.53	9.83	9.04	28.14	17.23
Merged-chr10-67311645-3	chr10	67311538	67311738	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26357.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	8.48	14.34	15.97	17.7	11.45	28.22	20.93	15.76	15.93	19.58	16.08	12.84
Merged-chr17-35255735-2	chr17	35255711	35255911	+	938.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4522.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	3.63	6.04	1.14	3.62	8.18	2.51	8.3	4.79	2.16	0.0	0.5	1.88
Merged-chr10-17215201-3	chr10	17215101	17215301	+	938.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119419.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.88	20.37	17.11	23.33	23.73	10.66	11.29	22.29	19.28	13.05	29.14	14.41
Merged-chr5-151322126-3	chr5	151322018	151322218	+	938.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46557.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	10.9	4.53	4.56	16.09	11.05	9.09	13.62	11.38	36.78	11.05	49.24	19.42
Merged-chr9-64341174-3	chr9	64341074	64341274	+	938.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177784)	promoter-TSS (NM_001177784)	83.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	14.54	20.37	15.4	13.27	15.96	13.48	11.63	9.36	15.54	12.55	10.05	17.54
Merged-chr11-46793074-3	chr11	46792983	46793183	+	938.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-17716.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	26.65	16.6	30.8	31.37	16.36	20.38	23.58	24.84	24.98	16.07	13.06	21.93
Merged-chr2-26603946-3	chr2	26603859	26604059	+	938.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026212, intron 1 of 5)	CpG	458.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	22.61	26.41	10.84	17.7	30.68	39.82	29.23	25.63	28.52	28.12	37.18	22.24
Merged-chrX-17637442-1	chrX	17637342	17637542	+	938.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-65117.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	6.46	4.78	6.85	14.08	13.09	8.47	20.26	28.26	7.08	1.0	18.59	5.33
Merged-chr15-74931811-3	chr15	74931708	74931908	+	938.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23243.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	28.67	20.12	38.79	32.58	10.23	13.8	8.64	19.85	52.71	42.68	62.81	25.06
Merged-chr8-69399480-3	chr8	69399353	69399553	+	938.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3909.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	10.5	10.31	4.56	7.64	17.59	11.29	10.96	12.76	14.36	19.08	17.08	12.22
Merged-chr12-101958863-3	chr12	101958770	101958970	+	938.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-627.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	26.65	17.36	10.27	24.94	12.68	17.25	21.59	26.89	37.17	31.13	35.17	10.96
Merged-chr17-63422839-3	chr17	63422745	63422945	+	938.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	77735.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	14.94	20.63	17.68	10.86	19.64	25.09	13.62	24.2	26.36	39.67	31.66	15.04
Merged-chr16-17201215-5	chr16	17201024	17201224	+	938.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009456, intron 1 of 3)	CpG	368.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	9.29	14.84	19.97	24.53	14.32	6.59	17.27	10.46	15.54	16.07	15.07	20.99
Merged-chr8-47948427-3	chr8	47948294	47948494	+	938.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42157.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	10.09	7.8	19.97	23.33	36.41	15.68	15.28	28.04	21.05	14.56	21.1	14.1
Merged-chr8-117295027-3	chr8	117294929	117295129	+	938.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	38010.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	28.27	12.83	21.68	12.47	33.14	30.42	24.25	33.0	23.41	23.6	32.66	15.35
Merged-chr5-65717577-3	chr5	65717492	65717692	+	938.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19736.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.67	14.34	21.11	18.5	8.59	14.74	9.3	16.79	18.49	13.05	22.11	15.98
Merged-chrX-12714008-3	chrX	12713910	12714110	+	938.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048208, intron 15 of 30)	intron (NM_001048208, intron 15 of 30)	-40371.0	NM_175141	69155.0	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	13.33	16.6	33.09	26.95	13.09	15.68	16.61	29.97	26.16	14.06	33.67	12.53
Merged-chr7-116531450-3	chr7	116531362	116531562	+	938.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	27093.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	11.31	10.56	25.67	6.44	7.36	25.4	6.64	14.8	15.14	19.08	20.6	14.72
Merged-chr7-102028167-3	chr7	102028082	102028282	+	938.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-10027.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	14.94	14.84	13.69	17.7	21.27	10.66	9.97	22.6	33.04	11.05	26.13	16.6
Merged-chr7-127406666-5	chr7	127406478	127406678	+	938.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167832, exon 1 of 3)	exon (NM_001167832, exon 1 of 3)	244.0	NM_146203	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	10.09	17.1	11.41	9.25	13.09	13.17	11.29	4.57	14.36	4.52	8.54	11.9
Merged-chr9-35177983-2	chr9	35177889	35178089	+	938.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2002.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	16.15	10.56	18.83	16.49	9.82	15.99	16.61	25.04	6.49	3.01	7.54	6.58
Merged-chr9-10566017-3	chr9	10565924	10566124	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 2 of 20)	intron (NM_001033359, intron 2 of 20)	338702.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	4.04	12.32	6.28	14.48	24.55	18.5	14.95	31.68	28.72	15.06	16.58	20.05
Merged-chr19-12818657-3	chr19	12818556	12818756	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 3 of 8)	L1MA9|LINE|L1	20077.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	21.4	12.32	18.25	8.85	26.18	19.13	17.94	24.03	18.88	13.05	8.04	5.01
Merged-chr9-111495858-1	chr9	111495758	111495958	+	938.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	56777.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	4.44	10.31	5.7	2.82	2.45	11.92	8.97	9.67	4.92	4.02	13.57	5.33
Merged-chr19-53653905-3	chr19	53653816	53654016	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23390.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	18.17	14.59	11.41	12.87	26.18	23.83	10.3	15.53	20.65	26.61	26.63	20.05
Merged-chr14-20824892-5	chr14	20824847	20825047	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-11715.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.42	5.28	6.28	5.23	7.77	4.7	5.98	3.34	8.46	12.55	6.03	2.51
Merged-chr2-148406514-1	chr2	148406414	148406614	+	938.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	1674.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.81	1.01	1.71	2.41	6.55	0.94	4.98	7.82	2.36	2.01	6.53	4.07
Merged-chr1-43589184-3	chr1	43589078	43589278	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141424.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	14.13	9.06	13.69	18.9	16.77	23.52	13.62	33.7	34.22	25.61	30.65	27.25
Merged-chr10-128338652-3	chr10	128338581	128338781	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	954.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	14.54	9.81	5.7	2.82	13.09	19.13	5.31	10.32	17.9	17.07	8.54	4.07
Merged-chrX-10857289-3	chrX	10857189	10857389	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139924.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	14.94	9.31	26.81	25.74	17.18	16.62	21.92	43.46	21.24	13.05	29.14	15.35
Merged-chr18-67324517-3	chr18	67324419	67324619	+	938.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033214, exon 2 of 4)	non-coding (NR_033214, exon 2 of 4)	-19045.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	18.17	18.11	18.83	4.42	21.68	14.11	7.64	22.71	24.98	22.59	29.14	12.84
Merged-chr5-24814172-3	chr5	24814068	24814268	+	938.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053075, intron 2 of 7)	intron (NM_053075, intron 2 of 7)	28193.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	19.38	9.56	27.38	23.33	11.86	15.68	8.3	17.72	24.39	11.55	23.62	15.35
Merged-chr3-8098906-3	chr3	8098798	8098998	+	938.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-144011.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	5.65	9.81	14.83	21.32	11.45	15.05	12.29	22.57	21.83	27.11	31.15	12.53
Merged-chr9-57831534-3	chr9	57831407	57831607	+	938.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	2727.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	11.31	10.31	3.42	3.22	13.5	18.19	11.96	5.16	12.78	5.52	6.03	10.65
Merged-chr5-129586209-3	chr5	129586111	129586311	+	938.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	2042.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	14.13	9.56	2.85	6.03	16.77	15.68	10.3	15.2	20.26	15.57	13.06	13.16
Merged-chr2-21091201-3	chr2	21091094	21091294	+	938.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114171.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	12.11	8.05	17.11	24.94	41.73	38.88	31.89	45.9	45.43	29.62	55.27	40.41
Merged-chr1-16651291-3	chr1	16651186	16651386	+	938.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310470, intron 1 of 4)	intron (NM_001310470, intron 1 of 4)	5579.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	20.19	10.06	13.12	27.75	26.18	30.1	11.96	27.06	40.12	29.12	43.72	17.54
Merged-chrX-21630765-3	chrX	21630655	21630855	+	938.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-84145.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	9.69	8.05	17.11	19.71	21.27	17.87	10.63	26.92	15.54	16.57	26.13	10.96
Merged-chr9-98330362-1	chr9	98330262	98330462	+	938.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33792.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.65	6.54	3.99	4.83	14.73	6.59	8.97	9.36	5.11	8.03	5.53	5.95
Merged-chr13-35749366-3	chr13	35749246	35749446	+	938.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	Lx9|LINE|L1	7944.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	14.13	12.83	21.68	10.46	5.32	11.92	10.96	12.7	12.0	19.58	22.61	7.83
Merged-chr19-16140287-3	chr19	16140182	16140382	+	938.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7451.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	25.84	23.64	18.25	12.47	23.32	32.93	17.27	14.97	29.5	27.62	27.13	12.22
Merged-chrX-163297354-3	chrX	163297239	163297439	+	938.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	LTR33C|LTR|ERVL	55225.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	15.75	12.07	25.1	6.03	6.55	15.68	10.63	7.29	11.21	20.59	18.09	10.34
Merged-chr17-87530593-3	chr17	87530502	87530702	+	938.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83667.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	8.88	8.55	6.28	8.85	21.27	17.25	2.66	12.53	39.34	29.12	48.24	23.18
Merged-chr6-61180250-2	chr6	61180148	61180348	+	938.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164316)	promoter-TSS (NM_001164316)	-77.0	NM_001164316	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	14.13	12.58	13.12	13.67	6.55	15.37	15.61	22.65	7.28	3.51	3.01	3.45
Merged-chr6-71446417-5	chr6	71446325	71446525	+	938.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5788.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	23.02	19.87	5.7	2.01	17.18	31.98	23.58	14.83	24.39	31.63	27.64	10.34
Merged-chr19-16029537-5	chr19	16029460	16029660	+	938.1749880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44485.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	8.48	6.04	2.85	6.44	7.36	5.33	12.29	3.48	6.69	9.54	7.03	9.08
Merged-chr2-132601998-2	chr2	132601906	132602106	+	938.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3810.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	9.69	3.27	5.13	7.64	20.86	9.72	8.97	15.03	19.08	12.05	16.08	6.58
Merged-chr10-94355241-3	chr10	94355137	94355337	+	938.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43288.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	15.34	14.84	13.12	13.67	11.86	32.93	14.28	18.5	19.87	26.11	19.09	5.95
Merged-chr15-59456763-3	chr15	59456651	59456851	+	938.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	82553.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	20.19	14.84	46.21	29.76	27.82	30.73	24.25	27.64	27.54	28.62	13.06	9.71
Merged-chr17-32143364-3	chr17	32143255	32143455	+	938.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008716, exon 24 of 33)	exon (NM_008716, exon 24 of 33)	23497.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	12.52	13.58	14.26	8.45	10.64	17.25	6.98	10.93	17.51	17.07	20.6	14.72
Merged-chr14-55730315-2	chr14	55730198	55730398	+	938.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8035.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	8.08	6.29	3.42	8.45	10.23	24.46	11.29	9.2	13.37	19.08	19.6	12.53
Merged-chr2-45280530-3	chr2	45280425	45280625	+	938.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163083.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.25	10.82	9.7	12.47	27.82	18.5	13.62	24.9	22.42	19.08	28.14	16.29
Merged-chr7-79936687-3	chr7	79936603	79936803	+	938.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1439.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	14.13	13.83	12.55	8.45	12.68	30.73	2.99	9.7	27.54	18.58	21.1	8.14
Merged-chr6-136946437-3	chr6	136946342	136946542	+	938.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4543.0	NM_001301309	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	18.17	5.79	17.11	22.52	16.77	12.54	14.62	21.98	24.0	13.05	26.13	9.71
Merged-chr11-5740759-2	chr11	5740654	5740854	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	CpG	422.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	10.9	16.1	4.56	12.47	16.36	14.42	14.28	6.79	16.33	14.56	21.1	11.59
Merged-chr3-145743224-1	chr3	145743124	145743324	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15468.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	2.83	1.01	2.85	5.23	6.55	10.98	9.63	13.77	5.7	5.52	7.03	5.95
Merged-chr8-13889786-1	chr8	13889686	13889886	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	485.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	4.04	3.52	4.56	4.83	8.18	4.08	5.65	8.47	9.64	4.02	7.54	5.64
Merged-chr19-37443061-3	chr19	37442945	37443145	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8204.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	25.84	16.6	26.81	10.86	18.0	10.66	7.31	17.66	25.57	16.07	12.06	13.47
Merged-chr6-108532958-3	chr6	108532859	108533059	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	43216.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	12.52	14.59	9.13	26.55	18.0	23.2	46.17	55.23	20.26	15.57	26.13	15.66
Merged-chr11-103132207-3	chr11	103132106	103132306	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1133.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	23.42	27.92	10.27	9.65	7.36	50.8	15.28	8.38	23.01	38.16	30.15	15.66
Merged-chr19-6298488-1	chr19	6298388	6298588	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010119, exon 5 of 5)	exon (NM_010119, exon 5 of 5)	-7969.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	10.9	11.82	7.99	2.01	3.68	6.59	5.31	1.93	5.7	11.05	5.53	3.45
Merged-chr3-67554000-1	chr3	67553900	67554100	+	938.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28768.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.63	4.53	1.14	1.61	2.45	2.82	1.33	3.22	15.93	20.08	18.59	12.84
Merged-chr4-71338830-2	chr4	71338734	71338934	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-803906.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	1.21	1.26	6.28	3.62	8.59	14.11	11.96	14.61	16.13	5.02	21.1	11.59
Merged-chr13-111778730-3	chr13	111778605	111778805	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	30288.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	15.75	17.36	11.98	28.56	4.5	2.51	14.95	8.02	11.8	8.54	12.06	4.07
Merged-chr1-131025993-3	chr1	131025873	131026073	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6128.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	31.9	26.91	14.83	10.05	17.59	33.24	24.58	15.17	55.07	55.73	46.73	32.27
Merged-chr3-69674379-3	chr3	69674296	69674496	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-47659.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	15.34	10.06	10.27	13.27	16.77	13.8	11.63	23.89	33.44	21.09	42.21	17.54
Merged-chr17-51785085-3	chr17	51784981	51785181	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	26973.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	14.94	19.87	18.25	14.08	8.59	14.42	6.98	18.76	18.29	13.05	15.58	6.27
Merged-chrX-93862675-1	chrX	93862575	93862775	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30580.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	3.23	1.01	4.56	5.23	5.32	3.14	7.31	10.01	4.33	4.02	7.03	5.33
Merged-chr11-77686644-3	chr11	77686558	77686758	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024205, intron 1 of 3)	GC_rich|Low_complexity|Low_complexity	519.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	7.67	28.67	11.98	17.29	15.55	23.2	8.97	7.6	21.05	30.63	28.64	17.54
Merged-chr6-120077188-1	chr6	120077088	120077288	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-16192.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.02	5.03	11.98	7.64	11.86	8.78	3.32	9.34	4.52	5.02	5.02	4.39
Merged-chr17-8284488-2	chr17	8284391	8284591	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018819, intron 1 of 3)	CpG	678.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	12.92	10.31	9.7	8.04	14.32	8.78	11.29	6.7	14.95	16.57	25.63	10.65
Merged-chr18-46152594-3	chr18	46152476	46152676	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46242.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	16.15	8.05	13.69	6.03	14.32	8.15	3.65	9.06	15.74	16.57	19.6	10.02
Merged-chr13-93939682-1	chr13	93939582	93939782	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 7 of 7)	intron (NM_009712, intron 7 of 7)	-118114.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.42	4.28	0.0	4.02	0.82	8.15	4.32	8.64	6.1	7.53	8.04	6.27
Merged-chr5-137510284-3	chr5	137510187	137510387	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	-7858.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	32.3	30.69	12.55	18.5	18.82	27.28	20.26	12.5	27.34	23.1	18.59	11.9
Merged-chr19-46645740-1	chr19	46645640	46645840	+	938.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	22339.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.4	2.26	0.0	2.01	1.64	2.2	2.66	2.02	5.11	5.02	0.0	2.82
Merged-chr17-35047270-3	chr17	35047173	35047373	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-528.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	19.38	11.07	11.41	24.94	11.05	10.03	7.31	14.33	20.06	9.54	26.13	15.35
Merged-chr1-185279351-1	chr1	185279251	185279451	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 31 of 34)	intron (NM_001163754, intron 31 of 34)	-33968.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	3.23	3.77	11.98	3.22	24.14	8.47	14.62	21.53	1.38	3.51	2.51	1.57
Merged-chr8-37788921-2	chr8	37788831	37789031	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	463271.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	11.71	13.33	11.98	21.32	32.73	23.83	34.55	40.77	0.79	0.5	0.5	0.31
Merged-chr12-112679405-1	chr12	112679305	112679505	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001100460, exon 2 of 2)	exon (NM_001100460, exon 2 of 2)	565.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	2.42	8.05	5.7	4.83	5.73	5.33	5.31	8.41	8.85	6.53	11.05	4.07
Merged-chr12-100087513-3	chr12	100087423	100087623	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24808.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	14.54	2.77	17.11	15.28	11.86	9.41	19.93	33.36	15.93	10.54	20.6	9.71
Merged-chr5-21717381-3	chr5	21717249	21717449	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-15727.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	11.71	8.8	16.54	10.86	12.27	26.65	26.57	14.22	19.28	15.57	20.6	16.92
Merged-chr2-163713377-3	chr2	163713281	163713481	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	19344.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	21.4	11.57	32.52	22.93	19.64	21.32	29.23	31.01	25.96	12.55	15.58	12.22
Merged-chr9-94818794-3	chr9	94818693	94818893	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 5 of 15)	intron (NM_177909, intron 5 of 15)	66964.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	13.33	7.55	24.53	29.36	25.36	15.99	24.25	41.07	15.14	12.55	16.58	12.84
Merged-chr6-140614067-3	chr6	140613933	140614133	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-8630.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	19.38	29.18	6.85	6.44	15.96	46.1	18.6	4.91	41.7	51.72	25.63	7.52
Merged-chr7-136327347-3	chr7	136327265	136327465	+	937.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	22050.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	6.46	7.04	15.97	6.03	10.64	10.66	23.92	21.31	31.08	25.11	46.73	15.04
Merged-chr17-53690148-2	chr17	53690056	53690256	+	937.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-841.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	8.88	5.53	7.42	5.63	14.32	8.78	10.3	24.67	18.88	12.55	28.14	12.84
Merged-chr11-80327521-3	chr11	80327416	80327616	+	937.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139228, intron 4 of 8)	intron (NM_139228, intron 4 of 8)	26604.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	13.73	14.84	14.26	19.71	15.55	20.7	12.29	18.84	24.59	16.07	18.59	12.22
Merged-chr2-121452222-3	chr2	121452111	121452311	+	937.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	3013.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	13.33	17.1	28.52	18.1	18.0	11.29	10.96	8.66	26.95	30.13	21.61	20.36
Merged-chr2-160057675-3	chr2	160057556	160057756	+	937.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41003.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	11.71	12.58	15.4	20.11	22.09	12.86	13.29	18.9	27.14	12.05	28.64	16.29
Merged-chr5-110102086-3	chr5	110101975	110102175	+	937.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281812, intron 4 of 6)	intron (NM_001281812, intron 4 of 6)	1516.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	14.54	20.88	15.4	11.26	6.95	16.93	9.63	16.43	18.69	19.08	16.08	17.23
Merged-chr13-113515270-3	chr13	113515173	113515373	+	937.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12429.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	21.0	8.05	12.55	30.97	14.32	15.99	17.27	27.08	16.52	8.54	20.6	12.22
Merged-chr19-45782769-3	chr19	45782616	45782816	+	937.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023799, intron 1 of 15)	intron (NM_023799, intron 1 of 15)	837.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	11.31	13.58	7.99	8.45	4.5	14.11	11.96	10.18	14.75	13.05	16.08	9.71
Merged-chr17-48346442-3	chr17	48346356	48346556	+	937.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272078)	promoter-TSS (NM_001272078)	55.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	25.04	9.06	7.99	7.24	15.55	20.38	15.61	27.81	25.77	17.07	21.61	16.6
Merged-chr8-39641790-3	chr8	39641693	39641893	+	937.822266	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	885.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.25	4.28	15.97	12.47	9.41	22.89	14.95	18.2	10.82	16.07	24.12	10.02
Merged-chr8-84800440-3	chr8	84800359	84800559	+	937.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010906)	promoter-TSS (NM_010906)	-121.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	18.57	18.36	13.12	11.66	9.82	26.03	16.94	16.6	30.09	27.62	32.66	8.46
Merged-chr16-5431854-3	chr16	5431737	5431937	+	937.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175881.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	33.52	36.22	28.52	28.96	35.59	34.81	30.89	22.15	16.72	10.04	18.59	10.65
Merged-chr9-111577643-3	chr9	111577544	111577744	+	937.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 8 of 10)	intron (NM_016853, intron 8 of 10)	112704.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	19.79	17.1	8.56	26.95	20.05	28.22	15.94	11.66	34.81	19.58	37.18	14.1
Merged-chr9-106789091-3	chr9	106788977	106789177	+	937.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030730, exon 1 of 22)	5' UTR (NM_030730, exon 1 of 22)	136.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	11.71	17.1	12.55	15.28	13.09	17.87	18.93	9.17	22.23	33.14	26.13	15.35
Merged-chr5-43915426-3	chr5	43915328	43915528	+	937.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	46619.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	12.92	13.08	21.68	11.26	21.68	24.46	34.88	25.04	20.06	15.57	37.69	26.31
Merged-chr9-45486787-3	chr9	45486667	45486867	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-55535.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	6.46	6.29	16.54	16.09	5.32	5.96	9.3	13.79	96.38	88.87	128.64	67.67
Merged-chr5-120502244-3	chr5	120502150	120502350	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	1373.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	15.75	21.63	16.54	9.25	15.55	26.97	22.92	28.99	41.7	41.67	38.19	19.42
Merged-chr14-76174510-3	chr14	76174396	76174596	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63605.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.25	4.53	17.68	13.27	11.05	12.86	16.28	19.51	15.34	15.57	22.11	11.59
Merged-chr7-98357424-3	chr7	98357324	98357524	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3864.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	43.61	16.1	33.66	55.5	37.23	26.65	37.2	50.58	20.06	10.04	32.66	9.71
Merged-chr17-33920887-3	chr17	33920784	33920984	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	1406.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	13.33	19.87	7.99	13.27	8.59	21.32	5.31	13.88	24.59	18.08	20.6	6.27
Merged-chr1-7086189-3	chr1	7086085	7086285	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2735.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	10.09	7.8	19.97	15.69	15.55	11.6	10.96	13.09	15.74	17.07	19.6	5.95
Merged-chr10-14053236-3	chr10	14053136	14053336	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	86857.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	17.36	20.88	16.54	12.07	33.96	54.56	18.93	31.79	42.09	36.65	28.64	10.96
Merged-chr18-54989284-3	chr18	54989203	54989403	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	877.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	11.31	11.07	8.56	6.44	24.55	15.37	14.28	16.12	14.16	21.09	14.57	10.34
Merged-chr11-119943875-2	chr11	119943754	119943954	+	937.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	762.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	11.31	10.56	14.26	6.84	11.45	8.47	11.63	6.56	13.96	13.05	10.55	5.64
Merged-chr7-92700384-2	chr7	92700287	92700487	+	937.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30475.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	7.27	3.27	4.56	6.03	2.86	22.58	9.3	11.19	21.24	11.55	24.62	16.6
Merged-chr16-31803888-2	chr16	31803796	31803996	+	937.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 8 of 22)	intron (NM_001357281, intron 8 of 22)	49546.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	7.67	5.03	7.42	7.24	12.68	15.37	5.98	13.54	20.06	7.03	6.53	10.65
Merged-chr1-185207985-3	chr1	185207876	185208076	+	937.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 1 of 34)	MTC|LTR|ERVL-MaLR	3808.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	17.36	10.06	14.83	13.27	13.5	12.86	15.28	17.07	20.06	11.55	18.09	10.02
Merged-chr19-32787567-3	chr19	32787457	32787657	+	937.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	MTC|LTR|ERVL-MaLR	29980.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	13.73	12.07	13.69	13.27	13.09	7.21	18.27	14.55	22.82	19.58	25.63	16.6
Merged-chr1-153549709-3	chr1	153549534	153549734	+	937.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028749)	promoter-TSS (NM_028749)	80.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	6.86	10.31	7.99	7.64	6.14	9.41	13.29	3.84	12.59	8.54	14.57	3.45
Merged-chr3-21997557-3	chr3	21997437	21997637	+	937.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79115.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	12.11	8.8	17.68	11.26	31.09	18.5	21.26	29.92	21.05	19.58	29.65	13.16
Merged-chr5-20969162-3	chr5	20969062	20969262	+	937.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17340.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	16.56	17.36	17.11	16.89	16.77	17.25	12.95	29.05	20.46	20.59	18.09	7.83
Merged-chr11-59169934-2	chr11	59169842	59170042	+	937.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6197.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	12.52	8.55	23.39	17.7	20.05	10.66	7.97	12.53	2.56	1.0	2.01	1.25
Merged-chr7-16892205-3	chr7	16892100	16892300	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010320, exon 1 of 4)	5' UTR (NM_010320, exon 1 of 4)	414.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	11.71	6.29	2.85	11.66	10.23	21.01	6.98	16.35	24.59	19.08	23.11	8.46
Merged-chr5-64210943-3	chr5	64210779	64210979	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	RSINE1|SINE|B4	-19478.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.67	2.52	8.56	13.67	8.59	15.68	22.92	30.62	17.11	4.52	21.1	9.08
Merged-chr11-75254722-3	chr11	75254630	75254830	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	60737.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	22.61	7.55	11.41	5.63	24.96	48.6	10.96	13.32	35.8	23.1	43.21	16.6
Merged-chr2-84523663-3	chr2	84523567	84523767	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16794.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	14.13	22.39	18.25	12.47	16.77	23.2	10.3	13.15	27.73	18.08	23.62	13.16
Merged-chr13-30987106-3	chr13	30987002	30987202	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13055.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	13.33	15.85	16.54	16.89	18.0	10.66	15.94	15.45	11.41	13.56	21.1	14.1
Merged-chr2-35841727-3	chr2	35841623	35841823	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	22533.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	15.75	16.6	21.68	22.52	11.45	7.21	9.63	19.43	24.19	13.56	18.59	6.27
Merged-chr10-127058390-3	chr10	127058284	127058484	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1800.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	15.34	11.57	17.68	5.63	11.45	17.87	6.31	10.71	16.72	18.58	20.1	21.93
Merged-chr9-13554942-3	chr9	13554792	13554992	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65097.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	12.52	13.33	23.39	10.46	12.68	20.38	14.95	14.22	22.42	9.04	17.08	8.46
Merged-chr18-12731564-3	chr18	12731481	12731681	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-9774.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	11.71	10.06	24.53	30.97	36.41	21.95	41.19	42.14	30.68	23.6	84.92	45.11
Merged-chr10-16593086-3	chr10	16593005	16593205	+	937.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	502677.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	18.17	19.12	25.67	31.37	24.55	20.38	19.27	30.67	19.28	12.55	27.64	9.08
Merged-chrX-142681247-7	chrX	142681158	142681358	+	937.5238039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199357)	promoter-TSS (NM_001199357)	-142.0	NM_001358727	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	21.0	20.88	19.4	18.5	18.82	21.64	27.24	12.98	32.26	37.66	23.62	14.41
Merged-chr18-54961486-3	chr18	54961379	54961579	+	937.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	28701.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	10.09	7.8	14.83	20.11	15.55	20.38	7.31	27.39	13.77	21.09	25.12	11.28
Merged-chr10-80676044-3	chr10	80675956	80676156	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021462, intron 1 of 13)	CpG-1308	237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	96.51	163.49	30.23	29.76	51.96	115.08	20.26	11.36	128.44	160.67	42.71	27.88
Merged-chr10-100160418-3	chr10	100160348	100160548	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144627.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.65	8.8	10.84	15.28	16.77	14.74	23.58	22.26	18.29	23.6	29.14	16.6
Merged-chr13-91631596-2	chr13	91631489	91631689	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-109932.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	11.31	11.07	17.68	12.47	18.0	9.09	10.3	21.53	3.15	1.0	0.5	1.25
Merged-chr5-135196564-3	chr5	135196467	135196667	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011714, exon 2 of 19)	exon (NM_011714, exon 2 of 19)	9244.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	12.52	10.56	12.55	11.26	13.91	26.34	11.63	19.51	30.09	18.08	34.17	12.84
Merged-chr17-31560142-3	chr17	31560062	31560262	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-4611.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	16.96	5.28	9.13	17.29	22.91	25.09	14.62	7.01	20.65	20.08	10.55	7.83
Merged-chr19-53020279-3	chr19	53020201	53020401	+	937.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133216, intron 3 of 20)	intron (NM_133216, intron 3 of 20)	-9545.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	17.77	17.61	15.4	10.86	9.41	19.13	8.97	14.16	15.14	11.55	14.07	5.95
Merged-chrX-13599538-3	chrX	13599440	13599640	+	937.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 10 of 26)	intron (NM_001284503, intron 10 of 26)	-33229.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	16.96	18.36	12.55	14.48	32.73	25.09	10.96	19.43	24.39	14.56	19.6	12.53
Merged-chr19-42146419-3	chr19	42146322	42146522	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-967.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	23.42	15.59	17.11	24.53	37.23	43.9	28.23	37.07	18.1	34.14	17.59	10.02
Merged-chr9-21804508-3	chr9	21804393	21804593	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177030, intron 43 of 49)	intron (NM_177030, intron 43 of 49)	5507.0	NR_106051	102465657.0		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	23.02	14.84	7.99	11.26	30.68	26.03	23.25	21.0	22.62	31.63	17.59	15.66
Merged-chr7-25704877-3	chr7	25704792	25704992	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011577, exon 7 of 7)	exon (NM_011577, exon 7 of 7)	14161.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	20.59	15.34	15.4	12.87	17.59	21.95	13.62	20.3	24.0	14.06	16.08	10.02
Merged-chr3-90245466-3	chr3	90245376	90245576	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1964.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	21.4	13.33	31.38	19.71	10.64	16.62	4.65	13.04	25.96	18.08	18.09	14.72
Merged-chr11-76581398-3	chr11	76581294	76581494	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3655.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	23.82	19.87	15.4	8.04	24.55	23.83	13.95	11.44	20.85	16.57	14.07	2.82
Merged-chr12-99902673-3	chr12	99902546	99902746	+	937.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18131.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	7.27	10.56	20.54	9.25	18.0	20.7	17.27	32.75	24.78	25.61	19.09	15.98
Merged-chr11-4833181-2	chr11	4833068	4833268	+	937.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-33.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	4.04	3.77	4.56	9.65	4.09	11.92	4.98	9.76	19.47	16.07	20.1	12.84
Merged-chr14-70576993-3	chr14	70576943	70577143	+	937.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-781.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	10.9	7.29	17.11	10.46	20.05	31.04	17.94	35.64	19.08	15.06	22.11	18.17
Merged-chr6-29360375-3	chr6	29360264	29360464	+	937.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	12258.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	16.56	19.12	27.38	15.28	25.36	22.89	25.91	40.23	7.67	15.06	13.57	11.9
Merged-chr19-14597430-5	chr19	14597267	14597467	+	937.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302951)	promoter-TSS (NM_001302951)	-154.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	16.96	21.38	7.99	14.48	17.59	16.31	10.3	9.59	20.46	27.11	17.59	12.84
Merged-chr13-42096245-3	chr13	42096141	42096341	+	937.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	44220.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	9.69	13.83	20.54	22.52	9.41	14.11	21.59	13.77	19.28	15.06	15.58	10.02
Merged-chr6-88829776-3	chr6	88829671	88829871	+	937.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12164.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	12.92	11.07	19.97	8.85	22.5	15.68	9.97	13.91	28.13	18.58	27.13	12.53
Merged-chr13-34044146-3	chr13	34044050	34044250	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6509.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	23.42	16.1	22.82	20.91	26.18	22.89	16.28	18.48	20.06	13.05	11.05	6.27
Merged-chr2-157371906-3	chr2	157371806	157372006	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	intron (NM_026968, intron 1 of 2)	4312.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	27.86	19.62	50.77	46.25	32.73	32.93	53.81	58.88	11.21	22.09	24.62	8.77
Merged-chr13-91461952-3	chr13	91461882	91462082	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	CpG	885.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	13.73	22.39	22.82	12.87	20.86	12.23	12.29	14.41	18.49	10.04	14.07	17.86
Merged-chrX-13311587-3	chrX	13311486	13311686	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30564.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	12.11	9.81	22.82	18.5	31.5	20.7	23.92	29.36	21.24	14.56	25.63	13.47
Merged-chr2-50498543-3	chr2	50498437	50498637	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	143512.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	17.77	11.57	17.11	10.46	21.68	31.36	14.95	4.79	15.54	14.06	16.58	5.64
Merged-chr10-4612855-3	chr10	4612755	4612955	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	866.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	11.71	23.9	35.94	23.33	23.73	29.16	17.94	41.36	18.1	17.07	26.13	7.83
Merged-chr14-77878037-4	chr14	77877890	77878090	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-3073.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	12.52	17.1	11.41	17.7	7.77	14.11	14.28	13.49	45.24	48.7	49.75	25.69
Merged-chr1-64927623-3	chr1	64927524	64927724	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29200.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	13.33	13.58	19.4	15.69	13.09	14.74	21.59	22.88	20.06	14.56	15.58	17.54
Merged-chr4-116463841-1	chr4	116463741	116463941	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008641, exon 1 of 29)	exon (NM_008641, exon 1 of 29)	340.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	7.67	13.58	17.68	12.87	11.45	5.02	9.97	5.66	4.72	6.53	7.54	3.13
Merged-chr2-120572322-3	chr2	120572224	120572424	+	937.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	4653.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	12.11	11.82	21.68	11.66	17.59	25.4	11.29	9.08	24.39	23.6	19.6	15.04
Merged-chr10-117330777-3	chr10	117330683	117330883	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37915.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	13.33	13.83	13.12	16.09	15.14	16.93	13.62	12.0	18.1	11.55	21.61	8.77
Merged-chr6-145599375-3	chr6	145599273	145599473	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16590.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	10.09	12.07	17.11	22.12	17.59	24.46	26.57	35.24	10.23	9.04	20.1	10.96
Merged-chr16-57487938-3	chr16	57487826	57488026	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-61316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	19.79	15.59	4.56	19.71	22.5	33.24	43.85	31.6	18.88	12.05	17.59	12.84
Merged-chr19-41982965-3	chr19	41982845	41983045	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	MIR3|SINE|MIR	1182.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	14.13	15.09	21.68	11.26	26.59	25.4	21.59	13.04	16.72	18.58	13.57	12.53
Merged-chr7-118534519-3	chr7	118534419	118534619	+	937.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	10.09	10.82	15.97	6.84	19.64	14.11	6.98	9.31	37.96	37.66	17.59	15.66
Merged-chr17-73395012-2	chr17	73394922	73395122	+	937.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	4274.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	22.61	11.32	27.95	12.87	13.09	7.53	10.63	13.09	3.34	2.51	13.06	3.76
Merged-chr9-57585163-3	chr9	57585054	57585254	+	937.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 7 of 8)	RSINE1|SINE|B4	-4298.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	10.09	21.88	20.54	25.34	11.05	17.25	19.27	28.01	25.18	14.56	19.6	21.62
Merged-chr6-54248512-3	chr6	54248408	54248608	+	937.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 6 of 12)	L1MB5|LINE|L1	-16350.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	18.17	8.3	37.08	20.91	20.86	20.38	19.93	29.94	13.18	22.09	23.11	22.87
Merged-chr3-36841009-3	chr3	36840906	36841106	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22100.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	9.69	10.31	12.55	14.88	13.09	8.47	17.94	15.84	20.26	13.56	22.61	11.28
Merged-chr11-88197433-2	chr11	88197314	88197514	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	3308.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	31.5	15.85	12.55	21.32	34.77	21.64	16.61	21.7	5.51	7.03	2.51	6.58
Merged-chr4-123632341-3	chr4	123632225	123632425	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	15905.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	17.36	9.56	19.4	18.5	18.0	14.42	5.98	19.99	21.24	16.07	10.55	11.28
Merged-chr8-10596501-3	chr8	10596392	10596592	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319151, intron 33 of 34)	intron (NM_001319151, intron 33 of 34)	285962.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	16.96	25.91	29.66	40.22	12.68	26.65	21.26	43.15	19.28	9.54	32.66	15.35
Merged-chr10-13299369-3	chr10	13299274	13299474	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	24915.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	10.5	15.09	18.25	8.04	11.05	18.5	8.97	9.39	17.11	19.08	3.52	6.27
Merged-chr7-92653520-3	chr7	92653422	92653622	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029078, intron 8 of 15)	B1_Mus1|SINE|Alu	-16380.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	15.75	13.08	13.12	17.7	11.45	19.76	10.3	17.61	22.82	21.09	18.59	7.83
Merged-chr11-102040314-3	chr11	102040207	102040407	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1204.0	NM_001160711	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	50.47	31.94	14.83	22.52	24.14	33.55	12.95	24.62	23.01	20.59	37.69	11.28
Merged-chr16-11036254-3	chr16	11036123	11036323	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27325.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	15.34	9.81	7.42	9.65	7.36	15.37	6.98	7.51	15.93	12.05	15.58	15.66
Merged-chr6-53710823-3	chr6	53710729	53710929	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109996.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	27.05	14.59	19.4	11.26	15.55	33.87	12.95	13.99	39.93	50.71	57.28	29.76
Merged-chr16-19983107-3	chr16	19983010	19983210	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183390)	promoter-TSS (NM_183390)	-61.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	15.75	13.08	25.67	16.09	17.59	9.41	11.63	23.33	11.6	18.08	21.1	11.28
Merged-chrX-7632701-3	chrX	7632616	7632816	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019582, exon 44 of 48)	exon (NM_019582, exon 44 of 48)	-5864.0	NM_009305	20977.0	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	14.94	11.07	11.98	12.07	11.45	22.26	21.59	20.89	23.01	39.67	37.69	25.69
Merged-chr9-116216898-2	chr9	116216809	116217009	+	937.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	27729.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	19.38	11.82	19.97	8.85	9.41	18.5	7.64	14.07	10.23	3.01	5.53	5.01
Merged-chr12-32292541-2	chr12	32292459	32292659	+	937.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83910.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	12.92	8.05	18.83	9.25	11.05	10.35	8.97	8.94	18.1	16.07	15.58	11.9
Merged-chr4-149780060-3	chr4	149779998	149780198	+	937.127014	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-5831.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.67	10.56	9.7	11.66	9.41	15.05	13.62	15.48	10.82	11.05	10.05	6.27
Merged-chr6-118066334-2	chr6	118066239	118066439	+	937.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-46.0	NM_027526	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	15.34	12.32	9.13	4.83	10.23	16.62	10.96	9.53	5.9	2.01	11.05	5.01
Merged-chr1-157008250-4	chr1	157008136	157008336	+	937.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68610.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	10.09	7.29	9.7	15.28	16.77	17.25	27.24	22.96	14.95	16.07	8.04	13.47
Merged-chr19-24156251-2	chr19	24156156	24156356	+	937.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-13174.0	NM_001360391	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	12.52	9.56	32.52	28.96	4.09	4.08	4.32	10.29	1.97	3.51	8.04	1.57
Merged-chr17-71215415-3	chr17	71215314	71215514	+	937.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	10760.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	22.61	15.09	16.54	22.12	22.09	21.01	13.29	15.08	23.8	8.54	13.57	20.36
Merged-chr13-94813933-3	chr13	94813853	94814053	+	937.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	25010.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	11.71	10.06	6.85	3.22	14.73	12.86	5.31	9.25	13.96	16.07	7.54	6.27
Merged-chr3-69633629-3	chr3	69633534	69633734	+	937.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34674.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	14.54	12.58	10.84	24.53	21.27	23.83	15.61	18.73	15.34	30.63	27.13	6.27
Merged-chrX-42148241-3	chrX	42148125	42148325	+	937.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_001077712	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	15.34	16.1	6.28	17.29	17.18	15.05	30.23	25.96	15.74	22.09	24.12	14.1
Merged-chr4-140699830-3	chr4	140699700	140699900	+	937.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	24.23	12.83	18.83	9.25	13.5	28.54	15.28	23.07	18.29	12.05	13.06	10.96
Merged-chr1-191186013-5	chr1	191185943	191186143	+	937.0083619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2710.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	9.69	6.79	2.28	2.01	11.05	12.23	5.98	5.13	9.24	5.52	11.05	14.1
Merged-chr4-72201787-3	chr4	72201681	72201881	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	537.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	13.73	9.56	8.56	12.07	11.45	10.35	9.97	16.21	21.44	13.56	24.62	10.34
Merged-chr3-97737836-1	chr3	97737736	97737936	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30178.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	2.83	5.03	4.56	2.41	5.32	9.72	0.0	8.24	2.36	6.03	11.56	3.45
Merged-chr5-92436201-2	chr5	92436106	92436306	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-1007.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	9.69	6.04	3.42	1.61	17.18	15.68	2.99	8.44	9.64	14.06	16.08	4.39
Merged-chr6-120114798-1	chr6	120114698	120114898	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	21418.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	2.01	5.7	1.61	4.91	10.66	11.63	10.79	4.33	1.0	0.5	1.25
Merged-chr13-21710149-3	chr13	21710058	21710258	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5985.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	11.71	12.32	8.56	7.64	18.0	18.5	12.62	15.06	10.82	15.06	21.61	15.98
Merged-chr9-58892394-1	chr9	58892294	58892494	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	68882.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	4.04	1.76	7.99	4.83	2.45	0.94	8.64	8.16	3.93	5.52	3.01	4.7
Merged-chr12-102390229-1	chr12	102390129	102390329	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001161365, exon 10 of 10)	3' UTR (NM_001161365, exon 10 of 10)	49584.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.86	7.55	1.14	4.02	11.45	3.14	7.64	6.87	9.05	17.07	6.03	2.82
Merged-chr13-107935124-1	chr13	107935024	107935224	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45060.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.62	1.51	4.56	4.02	12.27	3.14	8.97	9.31	1.18	5.02	3.52	0.63
Merged-chr4-133872667-3	chr4	133872578	133872778	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	2053.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	22.61	10.82	22.82	10.46	18.41	24.15	25.24	17.94	23.8	14.56	24.12	9.08
Merged-chr4-32147705-1	chr4	32147605	32147805	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	183598.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.23	1.76	25.1	5.23	14.32	11.92	40.52	30.34	2.95	2.51	6.03	4.7
Merged-chr4-34388675-1	chr4	34388575	34388775	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-161940.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	2.83	1.76	2.28	8.45	7.77	17.87	6.64	10.18	6.69	10.54	8.04	6.27
Merged-chr18-67406588-3	chr18	67406493	67406693	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027130, intron 16 of 16)	MIR|SINE|MIR	15862.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	20.59	15.85	14.26	11.26	9.41	14.74	12.62	21.59	18.69	7.03	28.64	21.62
Merged-chr5-4533774-1	chr5	4533674	4533874	+	937.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	224442.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	1.21	4.28	1.71	0.4	5.32	7.53	1.66	1.21	19.28	10.54	4.52	1.88
Merged-chr5-122284790-1	chr5	122284690	122284890	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177242, exon 1 of 6)	exon (NM_177242, exon 1 of 6)	392.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	13.73	11.07	13.12	14.48	8.59	5.96	6.31	7.43	12.19	10.54	9.55	11.28
Merged-chr14-47259134-3	chr14	47259037	47259237	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360532, intron 13 of 24)	B1_Mm|SINE|Alu	17720.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	13.33	26.66	10.27	9.25	16.36	27.28	9.97	17.22	21.64	24.6	22.61	15.98
Merged-chr13-52573267-3	chr13	52573146	52573346	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046069)	promoter-TSS (NR_046069)	-21.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	11.71	7.55	11.98	16.49	11.86	18.19	23.92	15.11	20.85	13.05	16.58	6.89
Merged-chr6-128446244-3	chr6	128446091	128446291	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028593, intron 2 of 4)	RMER10A|LTR|ERVL	7434.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	5.25	12.07	1.14	13.67	25.77	11.92	18.93	5.19	12.39	19.08	20.1	15.66
Merged-chr15-102316416-3	chr15	102316313	102316513	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356312, intron 18 of 30)	intron (NM_001356312, intron 18 of 30)	-9703.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	14.54	12.07	9.7	12.87	15.55	15.37	12.62	13.15	17.9	15.06	9.55	23.49
Merged-chr3-145649921-2	chr3	145649803	145650003	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	82.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	9.69	4.78	2.28	8.85	20.46	19.13	24.25	25.15	13.77	21.09	28.64	11.28
Merged-chr11-70865786-2	chr11	70865688	70865888	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	21027.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	7.27	5.79	0.0	2.41	14.32	15.68	1.66	3.56	22.03	18.08	5.02	4.7
Merged-chr17-34103046-3	chr17	34102962	34103162	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-7753.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	20.59	20.88	40.5	18.9	14.32	12.23	5.98	6.06	24.39	21.09	23.11	7.83
Merged-chr9-105764856-1	chr9	105764756	105764956	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 10 of 36)	intron (NM_001102607, intron 10 of 36)	44792.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	3.63	1.51	3.99	6.44	13.5	18.81	20.26	12.56	0.0	0.0	0.0	0.63
Merged-chr2-11530247-1	chr2	11530147	11530347	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	23682.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.25	7.8	4.56	1.61	10.23	15.05	10.3	8.78	8.46	12.05	7.03	7.52
Merged-chr12-110705965-2	chr12	110705868	110706068	+	936.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-9573.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.81	2.26	2.28	0.4	17.59	10.66	16.61	17.78	18.88	15.57	26.13	16.6
Merged-chr6-97818306-3	chr6	97818195	97818395	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	11237.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	13.33	11.82	5.13	15.69	9.0	22.26	7.31	9.22	31.27	30.13	30.15	21.93
Merged-chr11-45795853-3	chr11	45795766	45795966	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12217.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	16.96	12.07	11.41	13.67	11.86	12.54	7.31	10.74	13.57	7.03	22.11	13.16
Merged-chr11-119419512-3	chr11	119419412	119419612	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	29040.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	13.33	16.1	20.54	15.28	21.27	15.68	11.63	17.1	28.32	18.58	35.17	9.71
Merged-chr4-66842342-3	chr4	66842248	66842448	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14797.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	16.96	10.56	18.25	18.1	20.86	19.44	19.27	24.87	22.62	22.09	13.06	13.16
Merged-chr9-69702727-3	chr9	69702622	69702822	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58218.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	12.92	9.56	15.97	14.48	16.77	32.93	15.61	29.8	22.42	15.57	17.08	12.84
Merged-chr11-121434947-3	chr11	121434848	121435048	+	936.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022014)	promoter-TSS (NM_022014)	-5.0	NM_001038699	63828.0	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	22.61	15.09	13.12	14.88	38.05	23.2	6.98	21.73	17.7	19.08	24.62	15.66
Merged-chr13-37312743-3	chr13	37312645	37312845	+	936.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32600.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	19.79	18.36	14.83	8.85	20.46	22.58	20.59	21.56	24.39	26.61	33.16	14.72
Merged-chr17-57344619-3	chr17	57344519	57344719	+	936.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14067.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	12.52	7.8	18.83	7.24	22.5	22.26	16.28	19.23	29.31	11.05	17.59	12.53
Merged-chr11-62251248-3	chr11	62251128	62251328	+	936.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	2244.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	14.13	13.33	6.28	9.65	21.68	26.34	25.24	24.39	22.03	13.56	16.58	12.22
Merged-chr1-34463026-3	chr1	34462937	34463137	+	936.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 2 of 14)	intron (NM_011206, intron 2 of 14)	3291.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	24.23	15.85	11.41	23.33	16.77	17.87	8.3	8.75	20.06	21.59	36.68	15.66
Merged-chr13-113590377-3	chr13	113590283	113590483	+	936.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28181.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	30.69	18.11	9.13	10.86	59.32	105.36	74.74	55.46	80.05	83.35	95.97	37.28
Merged-chr11-106418833-3	chr11	106418733	106418933	+	936.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023913, exon 10 of 22)	exon (NM_023913, exon 10 of 22)	-36052.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	15.34	11.82	20.54	15.28	5.73	17.25	11.29	8.3	14.95	19.08	17.08	13.16
Merged-chr3-109011025-3	chr3	109010924	109011124	+	936.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	16583.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	22.21	11.82	18.83	13.67	27.0	25.4	12.29	17.5	24.78	25.11	13.06	8.77
Merged-chr3-116858531-3	chr3	116858385	116858585	+	936.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1082.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	9.69	7.55	3.99	8.85	11.45	18.81	18.6	20.33	22.03	22.09	14.07	13.47
Merged-chr2-38944936-1	chr2	38944836	38945036	+	936.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172854, intron 2 of 7)	intron (NM_172854, intron 2 of 7)	12956.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	4.85	8.05	6.28	6.44	13.5	11.92	12.62	6.87	13.18	7.03	8.04	5.64
Merged-chr18-80478232-3	chr18	80478132	80478332	+	936.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26D_MM|LTR|ERVK	-8565.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	15.75	10.31	22.25	16.89	27.0	12.86	14.28	16.93	17.9	12.05	39.19	17.86
Merged-chr7-120948312-3	chr7	120948219	120948419	+	936.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025298)	TTS (NM_025298)	30575.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	16.96	12.83	2.28	14.08	15.14	22.26	15.28	26.16	20.65	11.55	22.11	16.92
Merged-chr6-97995916-3	chr6	97995810	97996010	+	936.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001178049, intron 4 of 9)	intron (NM_001178049, intron 4 of 9)	4127.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	15.75	15.34	10.27	14.48	16.36	18.19	12.95	16.07	15.14	16.07	16.08	5.64
Merged-chr7-80402950-3	chr7	80402875	80403075	+	936.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011046)	promoter-TSS (NM_011046)	-163.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	10.9	12.32	2.85	12.87	11.86	13.8	11.63	8.38	12.98	26.61	22.61	16.29
Merged-chr10-18197401-3	chr10	18197269	18197469	+	936.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	13521.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	12.11	11.57	16.54	10.46	10.23	19.44	14.62	16.68	33.63	12.55	21.1	19.42
Merged-chr4-41507091-3	chr4	41506983	41507183	+	936.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253788, intron 4 of 5)	CpG	681.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	11.31	16.35	28.52	15.69	33.96	26.34	17.94	25.35	19.28	15.57	47.23	21.62
Merged-chr3-101601015-3	chr3	101600895	101601095	+	936.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	3712.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	13.73	9.81	18.25	26.95	10.64	15.05	14.28	22.35	15.54	16.07	22.61	16.29
Merged-chr15-25392601-3	chr15	25392518	25392718	+	936.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	L1MC1|LINE|L1	21146.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.88	18.36	27.95	10.46	21.27	20.7	18.93	13.43	19.87	14.06	20.1	19.74
Merged-chr2-5811737-4	chr2	5811706	5811906	+	936.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133837, intron 6 of 12)	MTD|LTR|ERVL-MaLR	-33228.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	14.54	7.04	3.42	14.48	15.96	10.03	13.62	9.06	9.64	18.58	16.58	11.59
Merged-chr1-40410060-1	chr1	40409960	40410160	+	936.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	-19510.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	6.86	1.51	6.85	14.08	16.36	7.84	17.27	18.73	6.49	5.52	16.58	5.64
Merged-chr8-126573306-3	chr8	126573210	126573410	+	936.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	20126.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.9	6.54	13.69	9.65	17.59	15.99	8.97	17.69	15.54	21.59	20.1	12.84
Merged-chr5-35670668-3	chr5	35670572	35670772	+	936.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042615, intron 2 of 6)	intron (NM_001042615, intron 2 of 6)	9108.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	20.59	16.1	30.8	26.14	22.5	15.05	32.55	30.39	9.05	17.07	24.12	18.17
Merged-chr17-88517755-3	chr17	88517655	88517855	+	936.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-12369.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	11.71	13.58	16.54	16.09	18.0	18.5	11.96	23.36	12.98	18.08	44.22	21.3
Merged-chr14-74949099-3	chr14	74949000	74949200	+	936.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1223.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	29.88	12.07	26.24	15.28	13.91	11.6	10.63	15.5	17.31	12.05	26.63	15.98
Merged-chr11-103027836-3	chr11	103027726	103027926	+	936.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-717.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	8.08	8.3	25.1	14.48	22.09	28.54	11.63	19.93	26.55	43.18	26.63	15.04
Merged-chr17-74808529-3	chr17	74808431	74808631	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	90781.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	18.98	18.36	31.38	21.72	6.55	6.59	5.31	13.85	40.12	27.62	50.75	25.69
Merged-chr13-113611062-3	chr13	113610972	113611172	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7492.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	15.75	20.37	39.36	25.34	15.14	16.62	9.3	5.55	21.83	16.07	19.09	11.59
Merged-chr15-73620432-2	chr15	73620327	73620527	+	936.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3103.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	1.62	3.02	4.56	9.65	20.86	7.53	6.98	9.7	16.52	9.04	18.59	11.59
Merged-chr3-28350243-3	chr3	28350142	28350342	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026910, intron 1 of 32)	intron (NM_026910, intron 1 of 32)	-69701.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	20.59	30.18	47.92	41.83	9.41	15.05	6.31	10.12	57.83	58.75	95.47	37.91
Merged-chr2-3703963-3	chr2	3703860	3704060	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9498.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	14.54	12.83	18.25	24.94	13.09	15.05	9.97	16.35	12.39	15.57	20.6	14.72
Merged-chr3-96559579-3	chr3	96559487	96559687	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009935, intron 4 of 7)	intron (NM_001009935, intron 4 of 7)	1630.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	10.9	9.81	13.69	10.86	14.32	12.86	10.96	18.9	21.64	22.59	23.11	16.6
Merged-chr2-140846984-3	chr2	140846889	140847089	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-175513.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	15.75	14.59	17.11	2.01	8.18	28.54	16.94	5.07	26.55	14.06	26.63	4.39
Merged-chr15-64022508-1	chr15	64022408	64022608	+	936.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	MIR3|SINE|MIR	-24442.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.04	5.28	12.55	6.44	3.27	13.17	8.97	9.53	2.75	2.51	4.02	2.82
Merged-chr17-87083888-3	chr17	87083780	87083980	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23799.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	12.92	13.83	15.4	13.67	24.55	11.92	12.62	13.88	16.92	18.08	24.62	11.28
Merged-chr12-80061075-1	chr12	80060975	80061175	+	936.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51938.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.27	9.06	7.42	3.62	15.96	20.38	3.99	9.28	12.0	11.55	5.02	3.76
Merged-chr1-133130026-3	chr1	133129932	133130132	+	936.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1134.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	18.98	17.36	22.82	4.83	7.36	13.8	6.64	15.14	25.57	20.59	18.59	33.52
Merged-chr12-40430778-3	chr12	40430666	40430866	+	936.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15024.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	16.56	16.1	21.68	28.15	10.23	16.31	14.28	29.75	15.54	13.05	37.69	12.22
Merged-chr9-110880204-3	chr9	110880110	110880310	+	936.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146228)	promoter-TSS (NM_146228)	36.0	NM_001146059	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	27.46	20.37	18.83	9.25	18.0	45.47	20.59	23.38	24.39	23.6	32.16	18.48
Merged-chr3-55660451-3	chr3	55660352	55660552	+	936.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-122058.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	8.88	17.36	17.11	20.91	15.55	16.31	13.95	40.04	19.67	15.57	24.62	10.96
Merged-chr19-6452407-3	chr19	6452318	6452518	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	33680.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	19.79	14.84	11.41	16.49	20.86	16.31	12.29	13.09	21.05	30.13	28.14	18.17
Merged-chr13-56611315-3	chr13	56611217	56611417	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	1731.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	14.54	15.09	10.27	11.66	16.77	14.42	15.94	19.85	20.65	31.13	37.18	14.1
Merged-chr11-6508678-3	chr11	6508583	6508783	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178440, intron 18 of 21)	MTD|LTR|ERVL-MaLR	12275.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	16.15	15.85	24.53	10.46	15.96	15.99	18.6	25.21	18.69	16.07	29.14	16.29
Merged-chr4-148084416-3	chr4	148084304	148084504	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	3660.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	15.75	8.8	15.97	15.28	22.91	19.76	16.94	21.08	30.49	15.06	39.7	16.92
Merged-chr12-91585463-3	chr12	91585371	91585571	+	936.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4178.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.08	9.56	23.39	6.84	17.59	28.22	21.59	21.22	25.37	24.6	23.62	12.84
Merged-chr1-157427130-1	chr1	157427030	157427230	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14535.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	7.67	7.29	1.14	8.45	20.86	9.41	14.95	15.64	11.41	9.04	9.55	5.01
Merged-chr18-37955603-3	chr18	37955503	37955703	+	936.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	44.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	12.11	10.56	18.83	18.5	15.14	6.59	7.64	13.91	11.8	14.56	20.1	17.86
Merged-chr19-43646371-1	chr19	43646271	43646471	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-4364.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	3.63	2.52	4.56	6.44	15.14	9.72	13.95	7.6	0.59	1.51	5.53	0.31
Merged-chr11-67564377-3	chr11	67564282	67564482	+	936.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-22118.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	13.73	25.91	16.54	9.65	17.18	32.93	19.93	9.25	53.3	47.7	44.22	13.78
Merged-chr7-88319170-1	chr7	88319070	88319270	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41085.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.88	2.26	0.0	6.03	11.05	2.82	5.31	8.3	4.13	6.53	3.52	2.82
Merged-chr15-34096517-1	chr15	34096417	34096617	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357925, intron 1 of 10)	PB1D9|SINE|Alu	13798.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.81	1.76	3.99	4.02	9.0	3.14	8.3	10.77	5.31	7.03	8.04	6.27
Merged-chrX-56466592-3	chrX	56466505	56466705	+	936.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	intron (NM_172779, intron 2 of 16)	11766.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	24.23	18.86	28.52	20.51	24.96	17.87	16.28	23.16	14.95	19.08	12.06	6.89
Merged-chr10-54074883-6	chr10	54074791	54074991	+	936.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008548, exon 2 of 13)	exon (NM_008548, exon 2 of 13)	905.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	14.13	21.38	19.4	14.88	15.14	10.03	13.62	12.31	14.55	8.03	11.05	13.78
Merged-chr3-153250785-3	chr3	153250680	153250880	+	936.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	47869.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	19.79	17.86	10.84	17.7	10.64	24.77	15.28	23.97	35.01	35.15	56.78	20.05
Merged-chr5-4962177-3	chr5	4962075	4962275	+	936.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-203959.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	17.77	16.1	13.69	15.69	14.73	14.74	15.94	24.08	16.92	12.05	31.15	12.53
Merged-chr15-38710958-3	chr15	38710856	38711056	+	936.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17560.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	3.23	3.27	18.25	15.69	15.55	13.17	32.22	36.5	21.83	11.55	43.21	31.01
Merged-chr8-57540364-3	chr8	57540270	57540470	+	936.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	28527.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.46	13.83	13.12	6.03	22.5	15.99	10.96	11.86	14.55	26.11	20.1	14.72
Merged-chr11-61854473-4	chr11	61854374	61854574	+	936.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 1 of 26)	CpG	618.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	22.61	19.87	9.13	15.28	15.55	15.99	14.62	11.21	21.05	18.08	8.54	15.35
Merged-chr5-62711186-3	chr5	62711080	62711280	+	936.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	54997.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	12.92	12.83	18.25	29.36	13.5	6.9	16.94	19.18	14.55	8.54	28.14	16.6
Merged-chr19-3686754-3	chr19	3686638	3686838	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008513)	promoter-TSS (NM_008513)	-174.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	12.11	15.34	11.98	16.09	19.23	10.98	12.29	11.55	17.11	15.57	12.06	12.84
Merged-chr12-80060523-1	chr12	80060423	80060623	+	936.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	52490.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.25	6.04	10.27	6.84	4.09	8.47	11.96	11.72	5.11	3.51	4.02	0.63
Merged-chr5-102003618-3	chr5	102003484	102003684	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	66337.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	14.13	13.58	11.41	4.83	12.27	20.07	11.96	14.94	19.87	17.07	22.11	11.28
Merged-chr4-106770938-3	chr4	106770904	106771104	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025590, intron 2 of 15)	intron (NM_025590, intron 2 of 15)	28827.0	NM_025590	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	18.98	13.58	12.55	11.66	10.23	10.35	19.6	18.84	18.69	17.07	11.05	10.34
Merged-chr2-157153428-3	chr2	157153343	157153543	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 19 of 21)	intron (NM_011249, intron 19 of 21)	-18221.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.04	12.83	23.39	9.25	23.73	30.73	20.93	14.3	20.26	18.58	21.1	12.22
Merged-chr4-94052917-1	chr4	94052817	94053017	+	936.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	503879.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.0	0.5	0.0	1.61	6.55	10.03	9.3	12.79	1.57	2.01	3.52	1.88
Merged-chr11-32562862-2	chr11	32562764	32562964	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29598.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	11.71	9.31	17.68	2.41	14.73	16.62	10.96	12.22	11.01	22.09	8.04	1.88
Merged-chr2-129182882-3	chr2	129182798	129182998	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2225.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	21.4	14.34	23.39	5.23	16.36	30.1	10.3	13.79	32.85	15.06	20.1	10.34
Merged-chr15-35724709-3	chr15	35724626	35724826	+	936.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 34 of 61)	intron (NM_177151, intron 34 of 61)	-63679.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	11.31	9.06	23.96	17.29	10.23	22.26	10.3	18.98	16.92	11.55	22.61	5.01
Merged-chr11-55028649-3	chr11	55028549	55028749	+	936.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	4822.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	11.71	17.86	23.39	15.28	19.23	20.7	9.63	19.26	21.24	18.58	25.63	10.02
Merged-chr4-89381938-3	chr4	89381850	89382050	+	936.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-70918.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	8.88	16.85	15.4	15.69	31.09	46.72	29.9	50.97	23.6	22.09	25.63	21.3
Merged-chr10-57570492-3	chr10	57570411	57570611	+	936.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-37982.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	9.69	15.85	15.4	18.1	14.73	9.09	30.23	27.5	21.83	9.04	14.07	18.17
Merged-chr11-90220248-3	chr11	90220197	90220397	+	936.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29179.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	11.31	8.55	10.84	19.31	6.95	15.68	15.61	9.31	7.87	6.53	8.04	8.14
Merged-chr17-24413852-3	chr17	24413771	24413971	+	936.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	642.0	NR_033554	654822.0	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	17.77	11.32	12.55	6.44	13.91	17.25	3.99	2.55	29.7	26.11	26.63	14.41
Merged-chr6-140594076-3	chr6	140593976	140594176	+	936.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144920, exon 31 of 31)	3' UTR (NM_144920, exon 31 of 31)	-28587.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.83	13.08	25.67	11.26	19.23	14.11	16.28	20.78	21.05	22.59	31.15	16.92
Merged-chr8-24427742-2	chr8	24427641	24427841	+	936.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11205.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.65	6.79	5.7	13.67	25.36	14.11	15.61	19.88	13.57	15.06	18.59	13.78
Merged-chr5-113907145-3	chr5	113907047	113907247	+	936.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 1 of 10)	MTC|LTR|ERVL-MaLR	1559.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	20.59	15.09	10.27	6.03	38.46	16.62	10.63	14.05	27.14	36.15	28.64	16.6
Merged-chr18-67460993-3	chr18	67460898	67461098	+	936.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3851.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	14.94	13.08	13.12	19.71	18.82	14.11	16.94	29.83	15.74	13.05	27.13	14.41
Merged-chr11-100893618-3	chr11	100893511	100893711	+	936.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 20 of 23)	intron (NM_213660, intron 20 of 23)	33127.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	17.77	9.56	14.26	14.48	6.14	11.92	12.29	12.7	25.77	19.58	20.1	12.53
Merged-chr8-14837772-3	chr8	14837662	14837862	+	936.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 13 of 15)	intron (NM_172910, intron 13 of 15)	-50774.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.88	10.56	20.54	8.04	11.05	17.25	13.95	22.32	26.55	20.08	12.06	21.3
Merged-chr9-104490836-3	chr9	104490731	104490931	+	936.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64718.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	15.34	10.31	27.95	38.61	33.14	13.8	20.26	37.18	39.93	16.57	45.73	25.69
Merged-chr17-13659323-3	chr17	13659228	13659428	+	936.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-101213.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	12.11	12.58	13.69	21.72	11.05	15.68	13.62	16.46	26.55	15.06	21.61	14.41
Merged-chr15-31315854-2	chr15	31315759	31315959	+	936.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357922, intron 1 of 2)	intron (NM_001357922, intron 1 of 2)	51900.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	7.67	5.28	4.56	5.63	15.55	20.7	7.31	15.98	17.11	5.02	24.62	2.82
Merged-chr1-59670180-3	chr1	59670080	59670280	+	936.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009460, intron 1 of 4)	intron (NM_009460, intron 1 of 4)	654.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	12.11	20.88	22.82	8.45	7.77	17.87	10.96	6.34	25.37	22.09	12.06	12.22
Merged-chr11-43632746-3	chr11	43632639	43632839	+	936.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31177.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	30.69	28.17	42.21	38.61	44.18	32.61	27.24	46.57	11.41	11.55	19.09	9.71
Merged-chr4-116627985-3	chr4	116627881	116628081	+	936.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016777)	promoter-TSS (NM_016777)	-30.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	21.4	27.17	19.97	15.69	24.96	32.61	9.3	20.92	32.26	34.65	48.24	18.8
Merged-chr8-72272615-3	chr8	72272524	72272724	+	936.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32606.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	23.82	15.34	21.68	8.85	35.18	25.71	32.55	39.08	17.7	17.07	17.08	12.53
Merged-chr17-4742507-3	chr17	4742392	4742592	+	936.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	107512.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	10.09	8.8	12.55	20.51	7.77	14.74	15.28	14.64	18.29	19.58	44.72	17.23
Merged-chr11-46035328-1	chr11	46035228	46035428	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	-19174.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.81	0.5	0.0	0.0	0.0	0.94	0.0	0.93	14.55	11.55	8.04	11.59
Merged-chr6-31170070-1	chr6	31169970	31170170	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48404.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.42	7.29	1.14	3.22	3.27	5.02	0.66	3.39	12.59	5.02	13.06	2.51
Merged-chr16-35803920-1	chr16	35803820	35804020	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152314, intron 3 of 8)	MIR|SINE|MIR	33534.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	6.46	0.5	3.42	0.0	4.5	7.84	4.32	9.08	3.74	7.53	3.52	4.7
Merged-chr5-32996043-1	chr5	32995943	32996143	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22773.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	5.25	2.01	7.99	8.04	14.73	3.76	11.29	12.81	3.74	6.53	15.07	2.82
Merged-chrUn_JH584304-98141-1	chrUn_JH584304	98041	98241	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-38452.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.75	41.67	7.54	19.11
Merged-chr15-58239297-1	chr15	58239197	58239397	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24405.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.67	3.02	3.42	6.44	9.0	3.76	1.99	8.44	10.42	3.51	4.02	3.13
Merged-chr9-64087710-3	chr9	64087615	64087815	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6954.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	19.38	13.58	15.4	7.64	25.77	20.7	14.95	10.04	26.16	35.15	16.58	10.02
Merged-chr17-73973702-3	chr17	73973547	73973747	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23451.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	11.71	9.56	8.56	12.07	15.96	16.93	14.62	21.59	20.06	15.06	26.63	11.59
Merged-chr13-9099502-3	chr13	9099404	9099604	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5623.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	17.36	11.82	19.97	10.46	9.0	20.07	9.97	14.69	24.39	25.11	17.59	26.94
Merged-chr2-92183871-3	chr2	92183784	92183984	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-298.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	25.04	21.88	11.98	18.9	24.14	25.71	23.58	19.35	35.21	30.13	25.63	17.23
Merged-chr2-57114668-1	chr2	57114568	57114768	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	CpG	370.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	15.34	12.32	11.98	8.04	11.86	18.5	21.92	18.87	25.77	12.55	37.18	30.7
Merged-chr17-35235113-3	chr17	35235006	35235206	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347351)	promoter-TSS (NM_001347351)	96.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	12.52	10.56	19.4	16.49	14.73	15.99	11.29	14.05	21.05	19.58	15.58	17.54
Merged-chr13-59073806-2	chr13	59073721	59073921	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 16 of 17)	intron (NM_001025074, intron 16 of 17)	266124.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.63	7.8	6.85	4.02	11.86	5.02	7.97	9.53	15.74	9.04	21.1	4.7
Merged-chr12-112956027-2	chr12	112955946	112956146	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13904.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	5.65	6.79	2.85	4.42	12.68	13.8	4.98	10.49	14.36	6.03	24.12	13.47
Merged-chr14-65375002-2	chr14	65374922	65375122	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	16346.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	12.52	10.56	12.55	5.23	2.05	19.44	11.29	13.57	8.46	6.53	7.03	4.07
Merged-chr9-107986557-3	chr9	107986467	107986667	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	-651.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	15.75	12.83	21.68	5.23	13.5	15.68	7.97	6.25	21.44	19.58	20.1	6.58
Merged-chr8-72216060-2	chr8	72215955	72216155	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3218.0	NM_001080812	234421.0	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	5.65	5.79	10.27	7.24	40.09	40.14	36.87	19.18	13.57	16.57	21.61	10.34
Merged-chr4-101741252-1	chr4	101741152	101741352	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 4 of 18)	RMER15|LTR|ERVL	23845.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	1.21	1.01	0.57	0.4	0.82	1.25	2.33	4.37	16.52	6.53	7.03	8.77
Merged-chr10-26828538-3	chr10	26828426	26828626	+	935.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	56014.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	18.98	6.79	22.82	22.93	27.41	13.8	19.93	20.1	21.83	14.06	20.1	14.41
Merged-chr16-33414414-3	chr16	33414286	33414486	+	935.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	B3A|SINE|B2	13941.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	9.29	17.1	21.68	11.66	14.32	10.98	8.97	24.17	20.65	9.04	17.08	9.08
Merged-chr13-67463953-3	chr13	67463844	67464044	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12320.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	11.71	13.83	22.82	32.18	18.82	11.6	7.31	17.58	23.6	12.55	36.68	15.04
Merged-chr13-45971292-3	chr13	45971190	45971390	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6299.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	12.92	15.34	18.25	17.29	15.14	12.54	6.64	13.79	20.06	7.53	15.07	10.96
Merged-chr6-31075894-3	chr6	31075783	31075983	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12790.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	15.75	9.56	23.39	16.89	11.86	14.42	13.62	24.14	24.98	14.56	26.63	16.6
Merged-chr3-129879351-3	chr3	129879259	129879459	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104611, intron 1 of 4)	intron (NR_104611, intron 1 of 4)	753.0	NM_023196	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	23.42	14.84	12.55	16.89	17.18	16.93	16.94	27.59	31.27	13.56	27.13	15.04
Merged-chr11-4600134-3	chr11	4600038	4600238	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-5323.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	14.13	13.58	17.68	11.66	28.64	6.9	8.3	15.11	29.7	17.57	16.58	13.78
Merged-chr13-34792155-3	chr13	34792046	34792246	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52504.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	12.11	16.6	19.4	9.25	19.64	23.52	18.93	23.69	16.92	19.58	18.59	8.14
Merged-chr15-102471725-3	chr15	102471599	102471799	+	935.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174073, intron 1 of 12)	intron (NM_001174073, intron 1 of 12)	1067.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	12.11	7.55	10.27	4.83	13.91	11.6	6.31	9.56	13.57	14.56	10.55	10.96
Merged-chr11-54965401-3	chr11	54965309	54965509	+	935.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-2469.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	18.98	20.37	20.54	10.86	22.5	23.2	11.96	12.25	28.52	33.64	37.18	8.77
Merged-chr15-95773679-2	chr15	95773576	95773776	+	935.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-17167.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.27	5.03	3.42	6.44	4.5	13.17	2.33	9.03	22.82	17.57	18.09	11.9
Merged-chr16-8736162-3	chr16	8736058	8736258	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	2184.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	21.4	14.09	26.24	11.26	15.14	25.4	10.96	26.64	15.93	14.56	15.58	10.34
Merged-chr1-107399571-3	chr1	107399458	107399658	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23131.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	7.27	11.57	18.83	14.88	19.23	17.56	23.58	25.54	20.26	17.57	26.13	13.78
Merged-chr7-99107032-3	chr7	99106915	99107115	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	34129.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.27	11.32	9.7	14.88	11.45	11.29	9.97	21.95	13.77	5.52	12.56	9.08
Merged-chr16-59617336-3	chr16	59617209	59617409	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019665, intron 7 of 7)	intron (NM_019665, intron 7 of 7)	-19636.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	21.0	15.09	9.13	18.9	36.82	19.13	18.27	28.32	20.46	16.57	26.13	9.08
Merged-chr10-26827647-3	chr10	26827537	26827737	+	935.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	(T)n|Simple_repeat|Simple_repeat	55125.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	21.0	11.32	21.68	21.72	12.68	11.29	13.95	14.86	21.83	11.05	19.6	10.65
Merged-chr1-171815966-3	chr1	171815866	171816066	+	935.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-23731.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	16.96	18.61	26.24	12.07	19.64	23.83	9.63	16.07	17.9	23.6	26.63	8.77
Merged-chr7-126596074-2	chr7	126595965	126596165	+	935.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1155.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	12.11	13.08	3.99	4.02	4.91	9.41	3.65	0.87	20.26	31.13	14.07	3.76
Merged-chr11-114571337-2	chr11	114571240	114571440	+	935.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97203.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	1.26	0.0	0.0	16.36	5.96	5.98	11.52	18.29	9.04	17.59	11.28
Merged-chr17-34027355-2	chr17	34027291	34027491	+	935.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008202)	TTS (NM_008202)	664.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	9.69	10.31	4.56	1.61	16.36	12.23	6.31	11.02	33.63	31.13	24.12	14.1
Merged-chr2-48537080-1	chr2	48536980	48537180	+	935.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-277029.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.83	4.78	3.42	5.23	11.86	16.62	10.3	8.58	3.34	4.52	18.09	2.51
Merged-chr1-183266285-3	chr1	183266174	183266374	+	935.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-30786.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	12.11	8.8	25.67	23.73	11.05	23.2	36.54	22.43	30.88	21.09	32.66	18.8
Merged-chr11-63788257-3	chr11	63788166	63788366	+	935.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134018.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	11.31	13.08	12.55	8.04	12.68	9.09	13.29	20.72	10.42	9.54	20.6	12.22
Merged-chr1-151703048-3	chr1	151702943	151703143	+	935.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 9 of 13)	intron (NM_022018, intron 9 of 13)	51684.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	19.79	14.59	31.95	25.74	11.05	23.52	14.62	23.44	18.88	32.13	15.07	12.22
Merged-chr7-27552250-3	chr7	27552142	27552342	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 1 of 13)	intron (NM_001317355, intron 1 of 13)	976.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	18.17	20.12	11.41	18.5	22.91	38.57	16.94	33.22	18.49	31.13	30.65	30.07
Merged-chr11-87466204-3	chr11	87466110	87466310	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	ORR1B1|LTR|ERVL-MaLR	38619.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	19.38	7.55	15.97	20.51	14.32	15.68	11.29	13.4	16.33	17.57	21.61	8.77
Merged-chr5-25663298-3	chr5	25663214	25663414	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42483.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	10.09	21.38	13.12	15.28	14.32	17.87	23.58	20.41	14.55	22.09	21.61	15.35
Merged-chr15-79109617-3	chr15	79109545	79109745	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177461, intron 1 of 15)	CpG	662.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	12.92	9.06	19.4	25.74	22.91	16.62	21.59	14.8	9.24	11.55	16.58	8.77
Merged-chr8-70755961-3	chr8	70755846	70756046	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009001, exon 2 of 5)	exon (NM_009001, exon 2 of 5)	1267.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	10.9	5.79	19.4	14.48	19.64	16.93	27.9	30.06	9.24	8.03	16.08	8.14
Merged-chr4-32373357-3	chr4	32373222	32373422	+	935.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44113.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	7.67	3.27	17.68	15.69	17.59	8.47	15.94	22.96	40.71	23.6	48.74	31.33
Merged-chr4-150569336-3	chr4	150569223	150569423	+	935.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	CpG	82851.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	13.73	19.62	12.55	16.09	11.45	12.23	21.59	9.56	14.55	18.58	15.58	13.16
Merged-chr4-123283769-3	chr4	123283557	123283757	+	935.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356377, exon 1 of 14)	exon (NM_001356377, exon 1 of 14)	746.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	7.67	4.28	0.57	5.23	0.0	3.45	3.65	0.0	7.67	5.02	13.57	9.4
Merged-chr19-46524243-4	chr19	46524068	46524268	+	935.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22520.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	13.33	12.07	10.84	16.49	13.09	17.25	11.29	6.28	10.62	12.55	15.07	7.52
Merged-chr19-60467373-3	chr19	60467283	60467483	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	921.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	8.48	7.29	7.99	13.67	15.14	15.05	11.96	17.05	20.06	19.08	26.13	21.62
Merged-chr5-105616314-2	chr5	105616221	105616421	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-83648.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	10.9	6.29	10.84	9.25	11.05	13.48	8.64	9.48	20.06	18.58	8.04	12.84
Merged-chr16-90726893-1	chr16	90726793	90726993	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025642, intron 1 of 4)	intron (NM_025642, intron 1 of 4)	478.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	11.71	5.53	6.85	2.41	19.23	10.66	3.65	9.31	10.82	13.05	7.03	8.46
Merged-chr13-101097063-2	chr13	101096958	101097158	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135069.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	4.85	2.77	3.99	2.41	16.77	13.8	13.95	21.39	15.34	11.55	16.58	14.1
Merged-chr9-116182330-3	chr9	116182239	116182439	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6841.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	29.48	12.83	18.25	12.07	20.46	21.01	10.3	18.79	14.55	5.52	14.07	10.02
Merged-chr15-90649533-1	chr15	90649433	90649633	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	29855.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.85	1.51	1.14	0.0	5.32	10.66	15.61	23.33	3.34	0.0	0.5	1.25
Merged-chr2-180045526-3	chr2	180045433	180045633	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	3050.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	16.96	16.1	15.97	15.28	20.86	23.52	11.96	18.48	19.28	15.57	16.08	10.34
Merged-chr1-171377324-3	chr1	171377236	171377436	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	7163.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	25.84	13.08	23.96	26.55	11.86	15.99	5.98	7.99	26.36	21.09	37.18	14.41
Merged-chr7-130819011-3	chr7	130818933	130819133	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081038, exon 12 of 16)	exon (NM_001081038, exon 12 of 16)	44964.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	31.5	14.09	15.4	12.87	9.41	16.31	9.3	11.44	16.13	2.01	14.07	9.08
Merged-chr7-19635510-2	chr7	19635413	19635613	+	935.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019649, intron 10 of 13)	intron (NM_019649, intron 10 of 13)	-6075.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	19.79	14.84	5.7	3.62	2.05	29.48	3.65	3.67	13.96	21.59	15.07	7.52
Merged-chr11-98813496-2	chr11	98813396	98813596	+	935.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-3407.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	16.15	11.57	14.26	6.44	4.09	14.11	10.3	8.3	9.44	13.05	5.53	3.13
Merged-chr9-60602169-3	chr9	60602072	60602272	+	935.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311095, intron 12 of 15)	intron (NM_001311095, intron 12 of 15)	-56290.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	19.38	19.12	15.97	38.61	18.82	18.81	14.95	20.83	12.78	14.56	12.56	12.22
Merged-chr7-4204007-3	chr7	4203923	4204123	+	935.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33731.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	21.8	5.28	19.97	22.52	18.41	9.09	14.28	21.14	23.21	19.08	14.07	8.46
Merged-chr8-39620521-2	chr8	39620446	39620646	+	935.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 4 of 9)	RMER6A|LTR|ERVK	22132.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	7.67	5.28	7.42	5.23	11.45	31.04	11.29	10.74	21.24	36.15	29.14	9.71
Merged-chr2-91065776-3	chr2	91065694	91065894	+	935.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290765, intron 3 of 9)	intron (NM_001290765, intron 3 of 9)	4521.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	11.31	9.56	9.13	3.22	10.64	12.86	8.3	9.5	16.52	8.03	3.52	9.08
Merged-chr3-108444801-3	chr3	108444678	108444878	+	935.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011319, intron 1 of 11)	CpG	481.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	5.65	8.3	14.83	5.63	14.32	13.17	13.29	11.24	21.64	14.06	28.14	11.9
Merged-chr8-26076334-2	chr8	26076246	26076446	+	935.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207659, intron 6 of 21)	intron (NM_207659, intron 6 of 21)	-6263.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	6.46	4.53	3.42	9.25	10.23	21.32	12.62	16.6	27.34	15.06	37.69	18.17
Merged-chr3-152884176-2	chr3	152884064	152884264	+	935.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	98043.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	5.65	18.11	33.66	14.48	14.73	9.72	9.3	15.98	2.36	0.0	2.51	4.7
Merged-chr5-86960711-3	chr5	86960602	86960802	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34199.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	13.73	13.08	14.83	12.87	42.55	37.63	30.56	58.57	39.93	41.17	28.64	15.35
Merged-chr5-105515509-3	chr5	105515384	105515584	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3987.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	18.98	23.39	23.39	34.59	27.82	23.2	20.59	30.42	25.57	11.55	8.04	13.16
Merged-chr1-170136584-3	chr1	170136487	170136687	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38377.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	8.88	10.31	13.69	14.08	14.73	21.32	16.94	28.15	19.87	20.08	32.66	21.93
Merged-chr7-107668746-3	chr7	107668640	107668840	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357437, intron 1 of 23)	intron (NM_001357437, intron 1 of 23)	3262.0	NM_001357436	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	24.23	8.3	32.52	16.49	13.09	18.5	9.63	28.49	16.33	6.53	15.58	8.46
Merged-chr4-43875564-3	chr4	43875436	43875636	+	935.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016678)	promoter-TSS (NM_016678)	6.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	12.11	9.31	14.83	8.85	15.55	15.68	20.93	14.38	11.21	14.56	12.56	15.98
Merged-chr15-96566337-3	chr15	96566224	96566424	+	935.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75638.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	16.56	9.31	10.27	13.67	27.82	20.07	13.29	20.36	12.39	13.56	18.59	3.45
Merged-chr11-69235393-3	chr11	69235291	69235491	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008192, intron 3 of 18)	C-rich|Low_complexity|Low_complexity	1631.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	17.77	11.82	5.13	15.69	17.18	35.43	12.29	11.61	17.31	13.05	21.61	8.77
Merged-chr1-55505160-3	chr1	55505058	55505258	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99212.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	15.75	13.58	27.38	15.69	23.32	23.2	15.94	21.76	19.28	9.54	22.11	14.41
Merged-chr10-42031248-3	chr10	42031133	42031333	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12851.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	21.8	11.07	14.83	8.45	17.18	20.07	23.25	15.14	19.28	16.07	30.15	12.22
Merged-chr11-3187230-2	chr11	3187125	3187325	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6238.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	13.33	10.06	3.99	10.46	10.23	11.29	8.64	11.66	18.29	26.61	17.08	18.48
Merged-chr12-41238334-3	chr12	41238235	41238435	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	214245.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	14.54	16.85	13.12	20.91	18.82	20.07	18.27	23.69	13.37	16.07	18.09	19.74
Merged-chr16-20622527-3	chr16	20622421	20622621	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177940, intron 2 of 18)	intron (NM_177940, intron 2 of 18)	-1243.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	16.56	14.84	13.69	14.88	15.14	19.44	14.28	27.95	24.78	12.05	28.14	15.98
Merged-chr18-21300310-3	chr18	21300200	21300400	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033445)	promoter-TSS (NM_001033445)	-161.0	NM_001033445	381126.0	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	16.96	27.67	2.85	26.95	80.59	78.39	51.82	68.13	11.8	10.54	14.57	8.77
Merged-chr8-34149725-2	chr8	34149685	34149885	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3046.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	1.62	2.26	2.28	6.44	12.27	4.39	11.63	4.74	5.51	4.02	8.54	10.96
Merged-chr3-22091949-3	chr3	22091852	22092052	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	RLTR23|LTR|ERV1	15300.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.85	14.34	4.56	15.69	9.0	13.48	9.97	13.91	12.19	8.03	15.07	4.7
Merged-chr13-6228505-1	chr13	6228405	6228605	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-319652.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	6.86	3.02	15.4	9.25	15.96	9.09	15.61	16.51	6.69	1.0	10.05	5.01
Merged-chr14-93654054-1	chr14	93653954	93654154	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	LTR50|LTR|ERVL	236615.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.42	2.77	1.14	5.23	11.05	6.59	12.62	12.0	3.93	2.51	3.52	3.13
Merged-chr12-73773103-2	chr12	73773007	73773207	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-128217.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.23	6.04	9.13	2.41	9.82	13.17	2.33	8.3	14.75	5.52	23.11	4.07
Merged-chr5-143424076-3	chr5	143423978	143424178	+	935.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20258.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	16.96	19.37	19.4	11.26	28.64	37.94	9.97	16.74	29.11	38.66	22.61	21.62
Merged-chr18-39737433-3	chr18	39737348	39737548	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36049.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	12.52	10.82	11.98	11.26	13.09	28.85	10.3	10.91	18.88	27.62	12.56	8.46
Merged-chr13-46735974-3	chr13	46735866	46736066	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8117.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	10.9	21.38	13.12	12.47	22.5	15.68	10.3	17.41	19.08	14.56	16.08	11.9
Merged-chr4-53441310-3	chr4	53441216	53441416	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 1 of 15)	intron (NM_133891, intron 1 of 15)	903.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	18.17	16.6	0.57	12.47	14.32	25.71	20.26	12.5	14.75	21.59	19.6	16.29
Merged-chr10-59225325-3	chr10	59225224	59225424	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	3402.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	12.52	9.31	9.7	7.64	18.82	18.19	11.63	10.63	21.83	25.61	31.66	12.53
Merged-chr9-55110646-3	chr9	55110535	55110735	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38734.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	22.21	15.09	14.83	12.87	23.32	31.98	6.98	14.22	14.16	12.55	22.61	12.84
Merged-chr3-79120193-3	chr3	79120102	79120302	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24685.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	31.09	12.32	10.27	7.64	27.41	44.53	12.95	16.43	48.19	38.66	30.15	15.04
Merged-chr7-88278942-3	chr7	88278844	88279044	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	859.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	20.59	19.12	14.26	6.84	17.59	24.46	8.3	11.05	15.54	20.08	21.61	12.53
Merged-chr7-101412947-3	chr7	101412809	101413009	+	935.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027180)	TTS (NM_027180)	-8782.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	11.31	21.88	14.83	17.7	23.73	19.76	8.3	16.04	24.19	34.14	29.14	18.48
Merged-chr3-144716068-3	chr3	144715944	144716144	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	4291.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	10.09	10.31	18.25	4.02	12.68	12.54	11.63	22.12	32.26	22.09	24.62	15.35
Merged-chr8-11008096-4	chr8	11008032	11008232	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	282.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	13.73	9.31	10.84	8.45	20.46	17.87	25.91	24.79	9.44	18.08	16.08	12.22
Merged-chr14-27388557-3	chr14	27388462	27388662	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 7 of 10)	intron (NM_027871, intron 7 of 10)	27173.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.67	12.58	18.83	12.87	10.64	8.78	23.58	26.92	20.26	12.55	26.13	10.65
Merged-chr5-135012884-3	chr5	135012778	135012978	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190437)	TTS (NM_001190437)	279.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	16.56	9.56	25.1	9.25	17.59	13.17	3.65	12.34	32.65	15.57	22.61	20.36
Merged-chr1-151343728-3	chr1	151343663	151343863	+	935.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-723.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	12.11	11.32	10.84	2.82	12.68	14.11	6.64	10.93	17.11	15.06	10.55	12.84
Merged-chr2-35271966-3	chr2	35271879	35272079	+	935.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	5235.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	13.73	13.58	5.7	5.63	15.96	21.01	10.96	7.43	14.55	12.55	17.59	4.07
Merged-chr3-79002665-3	chr3	79002562	79002762	+	935.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142225.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	12.11	9.06	17.68	14.08	18.82	15.68	12.62	26.19	19.47	14.06	20.6	10.02
Merged-chr10-67200458-3	chr10	67200349	67200549	+	935.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	L1MB3|LINE|L1	14699.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.86	12.58	23.96	2.82	19.23	16.31	10.3	11.97	13.37	16.57	15.58	4.39
Merged-chr15-59612015-3	chr15	59611905	59612105	+	935.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36649.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	29.88	33.96	16.54	11.66	22.5	18.81	9.3	10.12	33.04	20.08	21.61	15.66
Merged-chrX-12081302-3	chrX	12081207	12081407	+	935.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175046)	promoter-TSS (NM_175046)	-754.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.48	16.85	5.7	18.5	16.36	24.77	17.27	11.92	14.16	27.62	26.63	9.08
Merged-chr15-100175167-3	chr15	100175082	100175282	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172819, intron 13 of 32)	intron (NM_172819, intron 13 of 32)	12854.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	14.94	5.28	37.65	27.75	13.91	13.8	38.53	38.27	7.28	6.03	21.61	11.59
Merged-chr19-12462466-8	chr19	12462347	12462547	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	1668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	10.9	4.28	2.85	13.27	7.77	15.37	8.97	5.38	7.47	5.02	8.04	6.27
Merged-chr11-51911681-3	chr11	51911541	51911741	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-54011.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	10.09	10.31	14.83	7.24	21.27	21.64	35.54	29.97	24.78	21.09	22.61	16.92
Merged-chr8-104370599-3	chr8	104370536	104370736	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25171.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	16.56	9.81	5.13	19.71	17.59	10.98	22.92	27.67	19.47	11.55	20.1	15.66
Merged-chr17-26505473-3	chr17	26505304	26505504	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013642)	TTS (NM_013642)	3068.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	9.69	10.56	13.69	7.64	18.41	11.29	8.3	9.67	18.49	21.59	8.54	10.02
Merged-chr7-127471843-3	chr7	127471722	127471922	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	208.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	29.07	31.44	21.68	15.28	15.14	36.06	5.31	5.69	21.05	33.14	25.63	9.08
Merged-chr7-88482198-1	chr7	88482098	88482298	+	935.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028238, intron 2 of 2)	intron (NM_028238, intron 2 of 2)	51925.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	3.63	5.79	5.13	6.84	13.09	4.7	11.63	13.07	5.31	8.03	7.03	5.95
Merged-chr2-68438108-3	chr2	68438018	68438218	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	Lx8b|LINE|L1	33863.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	18.17	23.9	10.27	15.69	28.64	17.25	16.28	21.62	18.1	20.59	24.12	11.59
Merged-chr8-124924480-1	chr8	124924380	124924580	+	935.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	MIRc|SINE|MIR	24774.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	8.08	4.78	5.7	3.22	5.32	12.54	10.3	10.68	3.54	0.0	0.0	2.19
Merged-chrX-139485129-3	chrX	139485006	139485206	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175326, intron 1 of 13)	Lx5c|LINE|L1	4739.0	NM_001346522	102871.0	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325|Radx	RIKEN cDNA D330045A20 gene	protein-coding	19.79	16.1	14.83	9.25	19.64	31.67	13.62	10.29	45.24	34.65	29.65	11.9
Merged-chr11-44504317-3	chr11	44504248	44504448	+	935.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14616.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	11.71	12.07	24.53	3.22	25.36	23.83	6.98	6.59	31.86	33.14	11.05	12.53
Merged-chr11-58307734-3	chr11	58307600	58307800	+	935.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_182996, exon 2 of 12)	exon (NM_182996, exon 2 of 12)	631.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	12.11	11.82	18.83	19.31	12.68	6.9	19.27	11.5	18.49	13.05	10.05	13.47
Merged-chr10-121506810-3	chr10	121506706	121506906	+	935.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30556.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	16.56	8.05	19.97	12.47	33.14	18.5	38.53	71.64	31.27	17.57	41.71	20.36
Merged-chr5-137831298-3	chr5	137831220	137831420	+	935.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153510, exon 3 of 7)	exon (NM_153510, exon 3 of 7)	4958.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	10.5	7.04	26.81	14.48	23.73	20.38	4.98	16.32	16.13	17.07	25.63	13.78
Merged-chr19-53325760-3	chr19	53325650	53325850	+	935.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-3663.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	8.88	7.29	10.84	11.26	18.41	15.37	20.93	28.23	21.24	23.1	34.67	11.28
Merged-chr13-80960714-2	chr13	80960601	80960801	+	935.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3373.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.44	2.01	8.56	6.44	25.36	7.53	39.53	44.78	13.37	19.08	23.11	10.34
Merged-chr19-57622017-3	chr19	57621923	57622123	+	935.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 1 of 28)	L1ME1|LINE|L1	10989.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	19.38	12.07	15.4	18.1	34.77	39.82	24.58	33.11	17.11	14.06	14.57	9.71
Merged-chr8-115600044-3	chr8	115599929	115600129	+	935.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106865.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	19.79	8.8	40.5	32.58	42.14	25.4	42.85	59.92	25.37	37.16	63.82	24.12
Merged-chr11-115814092-3	chr11	115813998	115814198	+	935.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	-506.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	10.5	14.34	11.41	12.47	18.0	24.77	7.97	12.14	28.91	17.07	16.58	16.92
Merged-chr11-117320152-3	chr11	117320059	117320259	+	935.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11556.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	24.63	22.64	25.1	29.36	32.73	11.29	8.97	28.04	21.05	9.54	26.13	15.98
Merged-chr19-8997757-1	chr19	8997657	8997857	+	935.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	8473.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.85	4.78	5.13	8.04	20.46	10.03	13.95	14.83	7.08	6.53	7.54	2.51
Merged-chr6-84590464-3	chr6	84590372	84590572	+	935.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3338.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	18.98	13.58	21.68	13.67	19.64	21.95	8.3	15.98	21.83	15.57	19.6	10.96
Merged-chr2-155534241-1	chr2	155534141	155534341	+	935.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	intron (NM_019811, intron 2 of 17)	16198.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.0	0.0	0.0	1.21	8.59	19.76	8.3	12.03	1.38	1.0	3.01	0.31
Merged-chr18-65524707-3	chr18	65524606	65524806	+	935.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55524.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	10.9	11.07	11.41	14.88	13.09	12.86	18.27	24.08	22.03	21.09	27.64	13.16
Merged-chr4-59239421-3	chr4	59239322	59239522	+	935.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20629.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	21.0	21.88	26.24	9.65	35.59	30.73	15.94	15.67	41.89	33.14	24.62	12.53
Merged-chr9-45245595-3	chr9	45245452	45245652	+	935.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21155.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	21.0	19.62	16.54	16.49	11.45	17.87	27.57	18.7	12.78	15.57	9.04	7.83
Merged-chr4-45795842-3	chr4	45795739	45795939	+	935.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3183.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	10.5	12.07	13.12	8.45	10.64	6.59	12.62	10.68	16.92	20.59	21.61	19.42
Merged-chr8-73354368-3	chr8	73354331	73354531	+	935.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-891.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.85	7.8	10.27	4.02	5.32	8.15	7.31	13.57	11.01	7.53	20.1	17.23
Merged-chr2-119996101-3	chr2	119995983	119996183	+	935.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355293, intron 1 of 30)	intron (NM_001355293, intron 1 of 30)	-21434.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	23.42	20.37	22.82	3.22	18.41	22.58	5.98	10.15	11.01	13.56	12.56	4.07
Merged-chr10-78471114-2	chr10	78470993	78471193	+	935.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6145.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	2.42	4.53	13.12	5.23	19.64	23.83	20.59	22.4	12.19	14.56	12.06	20.36
Merged-chr11-25849021-2	chr11	25848935	25849135	+	935.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-353205.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.25	3.42	0.0	9.0	12.54	9.97	16.04	10.03	13.56	23.62	6.89
Merged-chr19-3899149-3	chr19	3899048	3899248	+	935.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136091, intron 10 of 19)	intron (NM_001136091, intron 10 of 19)	6082.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	19.38	10.82	19.4	16.09	20.46	15.05	15.61	17.47	24.78	14.56	18.09	8.46
Merged-chr7-82811755-3	chr7	82811658	82811858	+	935.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-55575.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	13.33	15.59	29.66	26.14	9.0	8.15	16.28	19.01	16.72	25.11	33.67	15.35
Merged-chr4-129058680-3	chr4	129058605	129058805	+	935.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029219, exon 1 of 9)	exon (NM_029219, exon 1 of 9)	434.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	23.42	33.2	13.69	11.66	27.0	44.53	14.28	6.42	32.26	32.64	20.6	10.02
Merged-chr13-60358884-3	chr13	60358777	60358977	+	935.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153406.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	16.15	10.31	13.69	19.71	20.86	40.76	23.92	27.81	22.62	19.08	13.06	13.16
Merged-chr6-124380376-3	chr6	124380270	124380470	+	935.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-15884.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	13.33	14.09	11.98	21.72	15.14	17.25	8.3	15.22	29.9	28.12	27.64	12.84
Merged-chr5-23435409-4	chr5	23435246	23435446	+	935.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040469)	promoter-TSS (NR_040469)	917.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	7.67	9.81	7.42	13.27	8.59	5.64	6.98	7.23	11.8	11.05	26.13	13.78
Merged-chr14-75130476-3	chr14	75130401	75130601	+	935.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001247984)	promoter-TSS (NM_001247984)	382.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	16.56	13.58	14.26	8.85	22.09	27.91	7.97	6.87	31.47	31.63	15.58	12.53
Merged-chr2-75725105-3	chr2	75725011	75725211	+	935.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20448.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	18.17	7.8	18.83	20.91	9.41	15.99	13.95	27.11	27.93	14.06	21.1	12.84
Merged-chr8-125729937-3	chr8	125729840	125730040	+	935.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4263.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	14.94	10.56	17.68	27.75	29.05	10.98	11.96	15.59	16.33	12.05	39.19	18.8
Merged-chr6-31219104-2	chr6	31218993	31219193	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-619.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.88	9.81	5.13	8.04	15.96	9.41	3.32	11.61	15.14	8.03	13.06	12.53
Merged-chr18-46198259-1	chr18	46198159	46198359	+	935.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178872, intron 1 of 9)	CpG	559.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.06	8.8	10.27	9.25	10.23	13.8	10.63	11.19	18.1	17.57	14.57	7.21
Merged-chr11-26128610-2	chr11	26128509	26128709	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-73631.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	5.65	6.04	6.28	3.22	15.55	10.66	17.61	15.0	20.26	16.07	25.63	10.65
Merged-chr17-27969503-1	chr17	27969403	27969603	+	935.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60197.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	2.42	3.77	4.56	1.61	4.91	3.76	1.99	1.49	11.01	7.53	13.57	4.07
Merged-chr13-23760831-1	chr13	23760731	23760931	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_178192)	TTS (NM_178192)	418.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	12.11	12.32	17.68	14.48	9.82	10.03	15.28	5.69	21.05	30.13	35.17	12.53
Merged-chr9-83537658-2	chr9	83537557	83537757	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-10681.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.46	4.53	3.42	3.22	7.36	21.32	14.28	3.5	18.29	21.59	14.07	5.64
Merged-chr2-33370970-1	chr2	33370870	33371070	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	524.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	4.85	8.55	5.7	6.44	5.32	8.47	9.97	6.84	15.93	9.54	7.54	12.22
Merged-chr18-46859691-2	chr18	46859586	46859786	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029008, intron 1 of 19)	intron (NM_029008, intron 1 of 19)	9647.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	16.96	9.81	2.28	11.66	42.55	40.45	15.61	20.83	2.36	1.0	0.5	1.25
Merged-chr10-56737262-3	chr10	56737159	56737359	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	305278.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	36.34	28.93	20.54	24.13	41.32	39.82	23.58	37.79	12.39	23.1	16.58	3.45
Merged-chr14-105397677-3	chr14	105397557	105397757	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29902.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	15.75	11.32	17.68	12.07	6.14	7.84	5.31	12.22	18.49	8.03	22.11	11.28
Merged-chr7-143086627-1	chr7	143086527	143086727	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020277, intron 5 of 24)	intron (NM_020277, intron 5 of 24)	8015.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	4.85	9.06	2.28	1.21	2.86	1.25	8.97	5.27	5.7	9.04	8.04	4.7
Merged-chr11-69801120-1	chr11	69801020	69801220	+	935.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010198, intron 1 of 5)	CpG	596.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	6.46	4.53	5.13	6.84	13.91	2.51	3.32	2.75	11.01	11.55	9.04	6.89
Merged-chr18-80938252-2	chr18	80938137	80938337	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-4179.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	4.85	6.04	4.56	7.24	5.73	10.98	4.32	8.89	27.93	24.6	40.2	24.12
Merged-chr2-76675343-4	chr2	76675353	76675553	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_031256, exon 1 of 8)	5' UTR (NM_031256, exon 1 of 8)	138.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	26.65	14.84	21.68	6.03	13.5	13.8	19.6	16.51	19.67	20.08	26.63	15.98
Merged-chr2-75823962-3	chr2	75823852	75824052	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8225.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	12.52	8.05	17.11	18.5	14.32	12.23	15.28	11.19	15.93	17.07	18.59	11.9
Merged-chr11-69121737-1	chr11	69121637	69121837	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033041, intron 2 of 3)	intron (NM_033041, intron 2 of 3)	1284.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0.0	2.52	0.0	0.8	5.32	4.7	1.0	2.33	3.74	2.51	3.01	3.45
Merged-chr2-126466791-1	chr2	126466691	126466891	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	24762.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.85	2.77	11.98	3.22	6.55	8.78	9.3	3.34	1.38	0.0	2.01	3.45
Merged-chr2-180225872-3	chr2	180225777	180225977	+	934.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081171)	promoter-TSS (NM_001081171)	-18.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	12.52	7.55	5.13	4.02	9.41	14.11	11.96	10.63	11.41	3.01	18.09	14.41
Merged-chr15-62106708-3	chr15	62106590	62106790	+	934.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	67433.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	9.69	11.07	26.24	16.09	31.5	12.86	14.62	40.99	16.33	22.59	19.6	27.57
Merged-chr19-5807912-3	chr19	5807790	5807990	+	934.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5218.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	15.75	15.59	9.13	11.26	21.68	16.93	11.96	15.56	10.82	16.57	19.6	15.66
Merged-chr6-33982877-3	chr6	33982786	33982986	+	934.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46562.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	13.73	11.07	20.54	14.48	18.41	15.99	13.29	17.1	19.67	11.05	31.15	9.71
Merged-chr8-35379377-3	chr8	35379276	35379476	+	934.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3635.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	12.11	13.08	18.83	10.46	11.05	17.87	11.63	26.83	12.59	11.05	21.1	12.22
Merged-chr12-102455876-3	chr12	102455774	102455974	+	934.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13260.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	12.11	9.06	19.4	11.66	17.59	12.54	25.24	37.63	36.39	29.12	64.82	36.65
Merged-chr10-20966301-3	chr10	20966200	20966400	+	934.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358561, intron 6 of 22)	intron (NM_001358561, intron 6 of 22)	13753.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	11.31	10.06	17.11	16.49	22.09	17.56	12.95	10.54	18.69	28.12	32.66	12.22
Merged-chr19-4295560-3	chr19	4295445	4295645	+	934.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	10677.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	12.92	9.56	3.99	3.22	19.23	22.58	10.96	7.79	14.16	13.56	13.06	4.39
Merged-chr2-90490473-3	chr2	90490369	90490569	+	934.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11295.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	20.59	20.88	21.68	10.86	11.05	21.64	14.95	22.54	29.31	20.59	24.12	10.02
Merged-chr4-135947093-3	chr4	135947025	135947225	+	934.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357529)	promoter-TSS (NM_001357529)	-281.0	NM_001357529	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	19.79	13.83	9.13	12.87	12.68	14.42	11.29	19.85	18.69	14.56	7.03	10.65
Merged-chr16-94590486-3	chr16	94590389	94590589	+	934.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	19582.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	8.48	15.34	33.66	26.55	15.55	18.5	14.28	21.98	13.57	10.54	15.58	14.41
Merged-chr14-50908385-3	chr14	50908286	50908486	+	934.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15131.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	14.54	17.36	18.25	23.33	16.77	16.93	12.62	15.53	7.08	16.57	14.57	12.22
Merged-chr16-36934370-3	chr16	36934276	36934476	+	934.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-607.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	11.31	12.07	17.11	9.65	13.09	19.76	3.65	5.07	18.1	16.07	12.06	10.02
Merged-chr19-12441695-1	chr19	12441595	12441795	+	934.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13790.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.81	0.0	2.85	0.0	1.23	0.0	1.0	2.61	28.32	27.62	16.08	24.75
Merged-chr13-109903078-1	chr13	109902978	109903178	+	934.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_035442)	promoter-TSS (NR_035442)	-731.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	13.73	4.02	0.57	6.44	17.59	10.03	14.62	14.92	4.92	1.51	5.02	1.57
Merged-chr10-89599534-2	chr10	89599458	89599658	+	934.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310710, exon 1 of 10)	5' UTR (NM_001310710, exon 1 of 10)	257.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	2.02	6.29	2.28	0.8	13.5	11.92	16.94	6.22	21.83	33.14	17.08	19.42
Merged-chr11-103419338-3	chr11	103419260	103419460	+	934.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6696.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	10.9	10.56	19.4	7.64	11.45	18.81	24.25	15.62	27.34	29.62	28.64	27.88
Merged-chr1-125519402-1	chr1	125519302	125519502	+	934.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41193.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.81	2.52	3.42	0.8	9.0	10.66	9.97	7.21	5.11	10.54	6.03	3.76
Merged-chr4-88167225-3	chr4	88167100	88167300	+	934.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 5 of 43)	intron (NM_001081184, intron 5 of 43)	45160.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	3.63	13.08	11.98	19.71	10.23	15.05	7.64	15.84	19.87	8.54	28.14	10.96
Merged-chr15-12230372-3	chr15	12230288	12230488	+	934.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	25360.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	19.38	9.06	10.27	13.67	10.64	28.85	11.63	17.58	18.88	16.07	20.6	21.93
Merged-chr2-31761850-3	chr2	31761750	31761950	+	934.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	1677.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	14.13	12.32	20.54	15.28	31.09	36.69	22.59	21.53	18.49	13.56	15.07	6.89
Merged-chr13-117036488-3	chr13	117036401	117036601	+	934.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10985.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	19.38	13.33	19.97	18.1	26.59	17.56	17.61	35.27	31.08	18.08	16.58	9.08
Merged-chr17-35078056-3	chr17	35077940	35078140	+	934.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027366, intron 2 of 2)	intron (NM_027366, intron 2 of 2)	1098.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	18.98	13.33	22.82	13.27	13.09	16.62	7.31	10.12	12.19	11.05	18.59	8.77
Merged-chr5-23387094-3	chr5	23386984	23387184	+	934.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47269.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	21.8	11.57	13.69	11.66	23.32	26.65	22.92	32.44	24.78	17.07	32.16	10.96
Merged-chr6-136464320-6	chr6	136464225	136464425	+	934.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-48756.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	18.17	14.34	17.68	19.31	13.91	5.33	12.62	20.78	12.59	5.52	13.57	11.28
Merged-chr1-80822369-2	chr1	80822289	80822489	+	934.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63836.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.63	5.03	3.99	4.83	6.55	18.19	8.97	19.01	24.19	15.06	19.09	7.21
Merged-chr11-21549958-3	chr11	21549862	21550062	+	934.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21972.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	11.71	9.31	16.54	18.9	19.23	11.6	9.97	21.0	22.03	24.6	15.07	24.43
Merged-chr13-99211185-3	chr13	99211067	99211267	+	934.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	26344.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	14.94	11.57	13.69	16.09	12.27	13.8	9.97	21.36	24.39	16.57	22.11	18.8
Merged-chr4-63494976-3	chr4	63494856	63495056	+	934.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028640, exon 1 of 12)	exon (NM_028640, exon 1 of 12)	1035.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	18.98	16.35	18.25	15.28	9.82	16.93	13.95	17.52	14.16	16.07	12.06	11.59
Merged-chr7-47072758-3	chr7	47072667	47072867	+	934.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10457.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	8.08	13.58	10.27	12.07	13.09	14.74	17.61	16.23	24.78	17.07	19.6	20.05
Merged-chr15-53237687-2	chr15	53237590	53237790	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	108493.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	22.61	15.34	29.09	26.55	11.45	14.42	11.29	15.64	6.1	7.03	10.55	6.89
Merged-chr9-100458483-3	chr9	100458380	100458580	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	27993.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	26.25	28.17	27.38	18.1	20.46	34.18	30.56	29.16	22.42	11.55	35.17	12.53
Merged-chr8-75081941-5	chr8	75081776	75081976	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11742.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	13.33	24.15	10.27	14.08	19.23	17.25	14.62	18.5	19.28	29.12	18.09	13.16
Merged-chr1-60899467-2	chr1	60899355	60899555	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9570.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	18.17	11.32	13.69	16.09	3.68	2.82	0.66	3.28	15.14	13.05	47.23	22.24
Merged-chr17-12135231-2	chr17	12135168	12135368	+	934.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	15984.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.02	1.76	1.14	2.41	3.68	6.9	15.28	14.47	9.24	6.53	25.12	10.65
Merged-chr15-38292175-3	chr15	38292063	38292263	+	934.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	7737.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	13.73	9.56	10.84	7.64	25.77	32.93	25.91	27.87	17.7	23.1	18.09	19.74
Merged-chr2-153346414-3	chr2	153346316	153346516	+	934.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040318)	promoter-TSS (NR_040318)	277.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	11.71	15.59	20.54	11.66	14.32	17.87	14.95	8.13	16.33	20.59	11.56	17.23
Merged-chr5-38260451-3	chr5	38260291	38260491	+	934.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356960, exon 1 of 5)	5' UTR (NM_001356960, exon 1 of 5)	206.0	NM_025480	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	9.29	13.33	10.84	5.23	10.64	18.5	17.61	11.13	23.41	29.12	39.7	24.75
Merged-chr8-69809069-3	chr8	69808980	69809180	+	934.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198101, intron 1 of 20)	intron (NM_198101, intron 1 of 20)	393.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	9.29	10.06	6.28	16.89	15.96	21.95	14.62	13.29	20.06	14.06	22.61	14.72
Merged-chr9-110071252-3	chr9	110071143	110071343	+	934.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	19222.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	19.79	8.8	20.54	10.05	21.68	21.01	24.91	23.83	24.78	14.06	32.16	16.6
Merged-chr11-118479781-1	chr11	118479681	118479881	+	934.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153103, intron 3 of 13)	B1_Mus2|SINE|Alu	2949.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	2.42	0.0	5.13	3.22	14.32	7.53	4.98	4.01	2.56	0.5	2.01	7.52
Merged-chr2-30967748-4	chr2	30967632	30967832	+	934.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144884, exon 1 of 5)	exon (NM_144884, exon 1 of 5)	186.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	12.52	16.35	12.55	23.33	12.27	15.37	21.26	6.56	24.19	27.62	18.09	18.8
Merged-chr1-16696807-1	chr1	16696707	16696907	+	934.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159711, intron 2 of 4)	intron (NM_001159711, intron 2 of 4)	8351.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.02	8.55	2.28	1.21	3.68	14.11	7.64	10.4	2.36	3.51	1.51	1.25
Merged-chr8-4258434-3	chr8	4258336	4258536	+	934.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183315, exon 2 of 2)	exon (NM_183315, exon 2 of 2)	838.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	19.38	11.07	8.56	5.23	11.05	18.81	5.98	12.48	26.55	16.57	36.18	14.1
Merged-chr9-9653655-3	chr9	9653548	9653748	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-240783.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	10.5	8.3	19.97	18.5	26.59	27.28	36.87	63.42	60.58	37.66	60.3	35.71
Merged-chr9-44551340-3	chr9	44551247	44551447	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24926.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	13.33	10.56	12.55	5.63	20.86	30.42	18.6	26.86	25.37	21.09	46.23	21.3
Merged-chr16-3706898-3	chr16	3706802	3707002	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161790)	TTS (NM_001161790)	11222.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	10.5	11.32	21.11	6.03	44.59	68.36	56.8	43.82	67.86	65.78	62.31	28.19
Merged-chr16-16104401-3	chr16	16104307	16104507	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	RMER1B|Other|Other	42444.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	12.92	11.07	18.25	15.28	11.45	17.56	13.29	7.51	12.39	19.58	22.61	13.47
Merged-chr1-120033252-3	chr1	120033170	120033370	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	26290.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	18.98	14.34	13.69	8.04	20.86	12.86	11.96	17.69	22.03	23.1	28.64	16.92
Merged-chr5-81020972-3	chr5	81020915	81021115	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	263.0	NM_001359830	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	18.17	7.8	9.7	16.49	11.05	14.74	15.94	13.01	11.6	12.55	11.05	12.22
Merged-chr2-151980028-4	chr2	151979851	151980051	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146127, intron 1 of 1)	CpG	268.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	6.86	2.26	6.85	5.63	9.82	5.96	7.64	8.16	6.88	16.07	10.55	6.89
Merged-chr11-114747951-3	chr11	114747850	114748050	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-17439.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	22.21	15.09	22.82	18.9	24.55	24.15	7.97	23.61	28.52	21.09	14.07	9.08
Merged-chr5-25436296-3	chr5	25436191	25436391	+	934.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081383, intron 2 of 58)	PB1D9|SINE|Alu	62492.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	15.75	14.59	10.84	16.49	30.27	31.98	7.64	19.88	37.96	20.59	18.09	15.98
Merged-chr2-172437750-3	chr2	172437581	172437781	+	934.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2897.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	8.48	10.56	19.97	14.88	13.5	14.11	22.59	24.87	10.23	5.02	16.58	9.4
Merged-chr15-79454999-2	chr15	79454889	79455089	+	934.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12846.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	6.46	7.29	10.84	1.61	10.64	13.17	6.64	11.52	15.34	21.09	20.6	10.02
Merged-chr6-116193108-2	chr6	116193040	116193240	+	934.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	CpG	234.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	17.77	9.31	7.42	8.04	20.86	12.86	11.63	12.42	15.34	18.58	13.57	8.77
Merged-chr12-61994456-2	chr12	61994350	61994550	+	934.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	471283.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	7.27	2.52	1.14	8.04	21.27	47.66	28.23	37.96	12.0	10.04	14.07	5.01
Merged-chr4-141638343-1	chr4	141638243	141638443	+	934.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-14509.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.25	8.3	3.99	4.83	0.0	4.39	2.66	5.44	18.88	17.57	17.59	13.78
Merged-chr13-58066995-1	chr13	58066895	58067095	+	934.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35433.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	7.27	6.79	7.42	3.22	16.36	12.86	8.64	11.83	16.33	5.02	9.04	3.76
Merged-chr6-52955502-3	chr6	52955417	52955617	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45897.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	10.09	7.04	14.83	20.11	16.77	23.52	13.95	34.04	33.44	23.1	42.71	26.31
Merged-chr3-137997480-1	chr3	137997380	137997580	+	934.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-15931.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.04	4.53	3.99	7.64	20.46	13.17	10.3	13.65	2.36	2.51	3.01	3.13
Merged-chr6-50973546-1	chr6	50973446	50973646	+	934.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	197431.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.23	5.28	10.27	6.03	5.32	5.64	2.66	15.81	20.65	16.57	17.59	18.17
Merged-chr9-110663054-3	chr9	110662956	110663156	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	L1MB4|LINE|L1	6553.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	14.54	11.32	15.4	8.45	29.46	26.34	11.96	15.67	26.95	25.11	32.16	19.11
Merged-chr13-4191164-3	chr13	4191062	4191262	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013778)	promoter-TSS (NM_013778)	-25.0	NM_013778	27384.0	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	14.13	11.32	8.56	12.47	21.27	17.87	22.92	20.89	19.47	30.13	45.22	24.43
Merged-chr8-41047456-3	chr8	41047356	41047556	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5525.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	8.88	12.58	21.11	8.85	25.77	18.19	20.26	38.13	23.41	18.58	30.65	12.53
Merged-chr5-136583871-3	chr5	136583766	136583966	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16376.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	18.17	8.05	21.11	19.31	9.0	17.87	0.66	8.61	23.41	19.08	8.54	10.34
Merged-chr10-68091996-3	chr10	68091888	68092088	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112418.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	10.09	10.31	11.41	13.67	31.09	26.34	17.61	24.34	19.28	15.57	35.17	15.35
Merged-chr4-101213758-3	chr4	101213643	101213843	+	934.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	MIR|SINE|MIR	51539.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	22.21	15.34	11.41	31.77	18.82	19.13	31.89	28.12	17.51	10.04	20.1	11.9
Merged-chr11-51650888-3	chr11	51650777	51650977	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027958)	promoter-TSS (NR_027958)	-77.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	19.38	24.65	9.13	14.08	14.73	21.64	10.3	9.34	19.87	29.62	21.61	8.77
Merged-chr19-37535247-3	chr19	37535161	37535361	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15157.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	22.21	13.08	14.26	23.33	27.0	24.46	20.59	24.98	12.39	12.05	15.58	7.21
Merged-chr9-72111201-3	chr9	72111064	72111264	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	37.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	14.13	13.33	7.42	8.45	17.18	16.62	6.64	13.74	18.1	15.06	28.64	13.16
Merged-chr11-8708858-3	chr11	8708745	8708945	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	12.92	14.84	6.28	16.49	21.68	11.29	7.64	25.54	25.96	18.08	26.63	21.93
Merged-chr17-40716474-2	chr17	40716382	40716582	+	934.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-10638.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	11.71	20.88	26.81	42.63	3.68	1.88	2.33	5.05	24.78	22.59	43.72	28.51
Merged-chr9-35114714-2	chr9	35114627	35114827	+	934.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2001.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.86	16.6	7.42	4.02	11.86	15.37	21.26	11.44	13.77	19.08	19.09	7.83
Merged-chr2-35451804-3	chr2	35451681	35451881	+	934.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	9668.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	44.01	27.17	58.76	42.63	25.36	17.87	22.92	34.43	11.41	11.05	15.58	16.29
Merged-chr1-55766946-3	chr1	55766845	55767045	+	934.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-164296.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	10.5	13.33	9.7	21.72	20.46	16.93	14.62	20.66	18.49	24.6	26.63	17.54
Merged-chr2-165318637-3	chr2	165318533	165318733	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2193.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	19.38	12.07	21.11	10.86	18.41	13.8	18.6	22.37	20.85	24.6	30.15	16.92
Merged-chr11-97997547-3	chr11	97997444	97997644	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1371.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	29.88	21.38	18.25	13.67	25.77	37.63	21.26	10.51	36.58	37.66	12.56	15.98
Merged-chrX-51019980-3	chrX	51019884	51020084	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1966.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	13.73	17.36	13.69	10.05	16.36	23.52	17.94	12.31	34.42	35.15	25.63	15.35
Merged-chr5-129779242-3	chr5	129779132	129779332	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133900, exon 3 of 8)	5' UTR (NM_133900, exon 3 of 8)	8021.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	14.94	12.07	12.55	9.65	17.18	16.31	16.28	22.4	22.82	21.09	21.61	13.78
Merged-chr10-6712473-3	chr10	6712367	6712567	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46126.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	18.98	7.04	18.25	19.31	10.23	15.99	6.31	23.27	23.41	27.11	38.19	15.66
Merged-chr16-18687569-3	chr16	18687469	18687669	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57631.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	8.08	13.83	9.13	19.71	21.68	42.96	14.95	25.91	14.36	14.06	17.08	8.77
Merged-chr8-80265113-3	chr8	80265017	80265217	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207109.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	16.96	18.36	27.95	17.29	21.68	15.99	20.59	31.74	13.18	8.03	11.05	14.1
Merged-chr10-111446450-2	chr10	111446355	111446555	+	934.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26772.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.25	3.77	7.42	7.64	9.82	8.47	16.28	22.6	18.29	5.52	17.08	22.87
Merged-chr19-17319942-3	chr19	17319851	17320051	+	934.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	19554.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.33	14.84	21.68	16.09	13.5	5.96	9.97	15.28	14.16	9.04	17.59	8.46
Merged-chr11-83714191-3	chr11	83714136	83714336	+	934.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B2|LTR|ERVK	5232.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	12.52	10.31	15.97	9.25	17.59	17.87	10.3	17.16	14.16	18.58	14.07	9.08
Merged-chr2-102990899-3	chr2	102990804	102991004	+	934.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82609.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	21.8	8.8	17.68	12.87	14.73	12.54	13.29	27.56	25.37	16.57	23.11	11.59
Merged-chr8-88637777-3	chr8	88637690	88637890	+	934.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1662.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	17.36	15.34	25.1	12.07	12.68	20.7	9.63	12.9	23.01	35.65	20.6	15.35
Merged-chr7-143048118-3	chr7	143048018	143048218	+	934.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4632.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	14.13	5.03	21.11	10.86	18.82	10.66	2.99	10.07	16.13	22.59	15.07	18.8
Merged-chr4-155944481-3	chr4	155944387	155944587	+	934.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284312, intron 1 of 7)	intron (NM_001284312, intron 1 of 7)	329.0	NM_001284312	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	7.27	5.79	14.26	12.07	11.05	14.11	11.63	9.73	29.7	32.64	54.77	24.43
Merged-chr4-7457647-2	chr4	7457561	7457761	+	934.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103027.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	2.83	3.52	9.13	26.55	21.27	12.86	16.94	28.29	9.83	14.06	35.68	18.8
Merged-chr10-88682170-4	chr10	88682070	88682270	+	934.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 1 of 5)	B1_Mus1|SINE|Alu	853.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	14.13	10.56	5.7	8.85	9.41	12.86	10.3	1.23	12.98	19.08	9.55	10.34
Merged-chr17-36205580-3	chr17	36205486	36205686	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15435.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	12.52	7.55	13.69	7.64	38.05	21.95	14.28	23.02	32.26	20.08	38.69	19.74
Merged-chr14-61310567-3	chr14	61310467	61310667	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177337, intron 1 of 1)	intron (NM_177337, intron 1 of 1)	814.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	25.84	25.66	17.68	22.52	28.64	28.54	17.94	31.15	29.7	13.05	14.07	18.48
Merged-chr8-10899860-3	chr8	10899750	10899950	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-72.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	12.92	13.83	11.98	11.66	21.68	22.89	10.96	17.89	28.91	22.09	16.08	12.84
Merged-chr8-60963001-3	chr8	60962897	60963097	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-8198.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	9.29	12.32	14.83	7.24	15.96	9.41	17.94	21.03	17.51	17.07	17.08	13.78
Merged-chr14-61802055-3	chr14	61801948	61802148	+	934.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-119675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	25.84	12.07	28.52	23.33	11.86	12.23	7.64	17.16	17.31	13.05	19.6	19.42
Merged-chr1-155471574-1	chr1	155471474	155471674	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54130.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	2.42	2.01	2.28	2.41	2.86	10.03	0.0	6.93	6.1	4.02	7.03	4.39
Merged-chr12-8511228-2	chr12	8511138	8511338	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-11229.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.44	6.04	0.0	3.62	24.14	11.92	31.89	23.38	58.61	71.3	75.37	25.37
Merged-chr11-85234617-1	chr11	85234517	85234717	+	934.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028329)	promoter-TSS (NR_028329)	503.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	15.75	20.12	10.84	15.69	22.5	17.56	15.94	6.81	12.39	18.58	14.57	16.92
Merged-chr8-8653632-1	chr8	8653532	8653732	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	7141.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.42	2.01	8.56	6.03	9.0	4.08	6.98	10.49	6.69	3.01	4.02	2.51
Merged-chr14-69732242-1	chr14	69732142	69732342	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_130166)	promoter-TSS (NR_130166)	328.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	8.88	14.59	8.56	5.23	9.0	12.23	12.95	9.14	11.6	13.56	20.6	10.65
Merged-chr1-184626629-1	chr1	184626529	184626729	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-68938.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	2.83	7.04	3.42	4.02	14.32	5.02	11.29	25.35	6.1	4.02	9.04	5.01
Merged-chr1-156989729-1	chr1	156989629	156989829	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-50103.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.0	0.0	0.0	0.4	4.09	3.45	6.31	7.12	1.38	0.0	0.0	2.19
Merged-chr6-81622695-1	chr6	81622595	81622795	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	272968.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	2.42	2.77	2.28	1.21	3.68	2.82	8.97	7.21	0.39	1.0	5.02	0.94
Merged-chr5-115510493-3	chr5	115510426	115510626	+	934.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3850.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	14.94	11.57	21.68	11.26	22.91	18.81	18.93	26.22	10.42	34.14	33.16	17.86
Merged-chr2-168231138-1	chr2	168231038	168231238	+	934.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	516.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	12.11	14.09	2.85	18.9	6.95	5.96	6.31	12.64	9.64	12.55	7.03	15.66
Merged-chr8-125416401-1	chr8	125416301	125416501	+	934.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76432.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0	0.25	1.14	0.0	0.82	0.94	0.0	0.79	11.21	20.59	17.59	10.34
Merged-chr13-23718053-2	chr13	23717957	23718157	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16A3|LTR|ERVK	-7203.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	5.25	4.78	9.7	8.45	9.41	2.82	5.65	11.5	8.46	6.53	28.64	10.34
Merged-chr14-122296631-1	chr14	122296531	122296731	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-62993.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	1.62	3.77	6.85	2.82	11.05	2.51	5.65	10.96	6.69	2.51	5.02	2.82
Merged-chr1-51938951-1	chr1	51938851	51939051	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.4	1.01	0.0	0.8	5.73	9.41	8.64	7.74	0.0	0.0	1.0	0.0
Merged-chr12-119069988-1	chr12	119069888	119070088	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103567.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	2.02	3.02	6.28	9.65	4.09	5.02	6.98	9.25	8.26	14.06	7.03	4.39
Merged-chr9-36768639-3	chr9	36768528	36768728	+	934.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1050.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	9.29	17.1	6.28	18.9	21.68	22.89	13.95	19.09	34.81	17.07	31.15	19.11
Merged-chr9-93184290-1	chr9	93184190	93184390	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178557.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0.4	0.0	0.0	1.61	3.27	5.02	7.64	8.3	0.59	1.0	0.5	0.0
Merged-chr1-135132609-3	chr1	135132512	135132712	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356382)	promoter-TSS (NM_001356382)	-37.0	NM_007955	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	11.71	14.34	14.26	9.25	18.0	24.46	9.3	22.77	32.45	24.6	31.66	18.48
Merged-chr17-29492090-6	chr17	29491917	29492117	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008842, exon 4 of 6)	exon (NM_008842, exon 4 of 6)	972.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.08	18.61	13.12	10.86	8.59	14.74	15.94	7.63	15.74	14.06	31.15	14.41
Merged-chr1-191447620-3	chr1	191447517	191447717	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	17431.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	36.34	29.68	20.54	12.47	5.73	22.26	2.99	10.4	22.23	25.61	21.1	20.99
Merged-chrX-77795330-3	chrX	77795238	77795438	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016979, intron 1 of 8)	CpG	622.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	8.48	13.33	19.4	12.07	10.23	16.31	8.97	10.54	18.88	15.06	26.13	25.69
Merged-chr2-32450012-3	chr2	32449903	32450103	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	-454.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	10.9	13.08	34.23	14.48	13.09	13.17	17.94	24.17	29.31	15.57	19.09	16.92
Merged-chr6-128767014-3	chr6	128766977	128767177	+	933.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	21564.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	8.88	9.56	2.85	5.23	6.55	10.35	18.6	9.81	9.83	11.55	23.62	11.28
Merged-chr3-18624969-2	chr3	18624886	18625086	+	933.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144509.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	5.65	4.02	2.28	3.22	31.09	9.41	12.62	21.06	13.96	13.05	13.06	11.59
Merged-chr2-60815052-3	chr2	60814963	60815163	+	933.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	66375.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.67	12.32	37.65	26.14	35.59	16.93	44.18	42.65	32.26	20.59	41.71	18.17
Merged-chr10-10556024-3	chr10	10555937	10556137	+	933.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2170.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	15.75	12.32	26.24	16.09	26.18	20.38	10.96	26.86	26.75	12.55	32.16	23.49
Merged-chr11-106255776-3	chr11	106255664	106255864	+	933.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	320.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	17.77	12.32	10.27	19.31	14.32	15.68	15.94	14.13	21.05	22.09	16.58	16.29
Merged-chr5-113810257-3	chr5	113810167	113810367	+	933.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17B|LTR|ERVK	-9915.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	18.98	16.6	15.4	4.42	32.32	33.24	11.29	8.3	30.88	31.63	30.65	26.63
Merged-chrX-71815998-2	chrX	71815938	71816138	+	933.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290781)	promoter-TSS (NM_001290781)	-42.0	NM_001290781	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	4.85	4.02	2.28	9.25	9.0	8.15	9.63	10.85	11.8	12.55	13.06	11.28
Merged-chr1-131253796-2	chr1	131253698	131253898	+	933.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019777)	TTS (NM_019777)	-8620.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	25.44	14.84	5.7	2.41	12.27	15.68	2.33	1.65	14.95	23.1	13.57	4.39
Merged-chr1-64617719-3	chr1	64617633	64617833	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-565.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	15.75	18.61	14.83	16.89	17.18	11.29	6.64	12.73	18.88	19.08	16.58	20.05
Merged-chr15-31532190-3	chr15	31532109	31532309	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1172.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	12.92	13.08	12.55	8.04	29.46	14.74	14.62	26.19	26.36	19.08	34.67	16.6
Merged-chr16-44109315-3	chr16	44109210	44109410	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358203, intron 6 of 14)	intron (NM_001358203, intron 6 of 14)	29949.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	11.31	9.81	18.25	22.52	18.0	23.2	9.3	32.27	16.33	10.04	19.6	14.72
Merged-chr11-114934401-3	chr11	114934299	114934499	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199221)	promoter-TSS (NM_199221)	-13.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	11.31	9.81	26.24	12.07	17.18	13.8	14.95	23.89	18.29	19.08	22.11	11.59
Merged-chr8-24424425-3	chr8	24424332	24424532	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14514.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.46	10.06	15.97	22.12	11.45	14.74	17.61	26.13	24.39	29.62	35.17	26.31
Merged-chr9-16042840-1	chr9	16042740	16042940	+	933.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-168284.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	2.42	4.02	2.28	6.03	11.45	11.92	15.61	23.05	12.0	6.03	8.04	3.45
Merged-chr17-24720783-3	chr17	24720695	24720895	+	933.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	6.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	8.08	10.06	27.95	13.67	19.64	23.83	13.62	13.07	18.88	11.05	18.09	5.01
Merged-chr11-76479348-3	chr11	76479221	76479421	+	933.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-10856.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	16.15	9.56	11.98	12.87	16.77	10.03	13.95	12.25	14.16	8.54	12.56	6.58
Merged-chr1-106099331-3	chr1	106099232	106099432	+	933.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72192.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	21.0	11.32	25.67	32.18	20.05	17.56	37.2	45.14	16.13	12.55	24.12	18.17
Merged-chr7-132714352-1	chr7	132714252	132714452	+	933.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	62564.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.23	4.53	5.13	5.63	10.64	7.21	15.28	19.99	2.75	0.0	6.53	2.19
Merged-chr9-108443533-3	chr9	108443427	108443627	+	933.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004192, intron 2 of 3)	intron (NM_001004192, intron 2 of 3)	7045.0	NM_001004192	434439.0	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	30.69	18.36	33.09	25.34	25.36	15.68	9.63	23.5	18.49	11.05	22.61	15.04
Merged-chr15-26362286-3	chr15	26362178	26362378	+	933.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	53230.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	10.09	9.31	21.11	16.89	44.59	36.37	27.24	33.22	37.57	35.65	45.22	26.63
Merged-chr19-34435442-3	chr19	34435354	34435554	+	933.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39681.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	10.9	10.82	26.24	16.49	24.14	16.93	23.58	25.35	17.51	6.53	12.06	9.71
Merged-chr10-94098267-1	chr10	94098167	94098367	+	933.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-49664.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.81	2.52	1.14	0.0	4.09	5.02	2.33	0.7	12.98	8.54	14.57	11.9
Merged-chr2-158046502-3	chr2	158046409	158046609	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027434, intron 3 of 6)	Tigger6a|DNA|TcMar-Tigger	18012.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	12.52	13.58	26.81	23.73	13.91	15.68	21.59	19.74	13.18	10.54	13.06	9.71
Merged-chr14-64883284-3	chr14	64883212	64883412	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	L1MC1|LINE|L1	66545.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	24.23	10.06	26.24	22.12	15.55	9.41	26.91	29.61	9.05	12.55	20.1	19.11
Merged-chr3-116130379-3	chr3	116130278	116130478	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011693)	promoter-TSS (NM_011693)	-690.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	21.8	14.34	22.82	20.91	23.73	23.2	13.95	25.46	21.05	14.56	23.11	10.65
Merged-chr11-20656057-3	chr11	20655942	20656142	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24065.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	15.75	10.56	13.69	15.28	26.18	13.8	13.62	27.06	14.55	8.54	17.08	17.23
Merged-chr10-19506599-3	chr10	19506487	19506687	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152785, intron 2 of 2)	intron (NR_152785, intron 2 of 2)	11944.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	12.11	6.04	15.97	15.28	24.55	15.99	22.59	23.8	20.46	27.11	29.14	18.17
Merged-chr5-99358181-3	chr5	99358082	99358282	+	933.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-105255.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	18.98	24.65	16.54	9.65	27.82	56.13	22.59	20.3	21.44	17.57	20.1	11.59
Merged-chr5-140771876-3	chr5	140771784	140771984	+	933.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	47757.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	22.21	25.15	21.68	5.23	13.09	29.79	20.59	12.25	15.74	17.57	13.06	9.71
Merged-chrX-71222969-4	chrX	71222902	71223102	+	933.6041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 1 of 15)	intron (NM_001358113, intron 1 of 15)	7928.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	9.69	9.81	9.7	9.25	5.73	14.42	7.64	8.72	7.67	13.05	9.04	5.01
Merged-chr2-181276224-2	chr2	181276129	181276329	+	933.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	11737.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	1.62	3.27	1.14	0.8	18.82	41.39	23.58	8.78	31.86	36.65	21.61	7.21
Merged-chr11-120360229-3	chr11	120360130	120360330	+	933.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1304.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	16.56	6.54	10.84	20.11	12.68	17.25	4.65	15.08	13.57	5.02	25.63	15.35
Merged-chr10-127538054-3	chr10	127537963	127538163	+	933.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008512)	TTS (NM_008512)	-3504.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	14.94	9.56	15.4	10.86	9.0	16.31	14.62	13.51	19.08	29.12	18.09	13.78
Merged-chr19-37180753-3	chr19	37180667	37180867	+	933.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045329, intron 2 of 2)	ID_B1|SINE|B4	-4704.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	26.25	20.88	15.4	13.67	20.46	12.54	20.59	24.59	20.26	11.55	24.12	9.4
Merged-chr1-45865521-3	chr1	45865419	45865619	+	933.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60075.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	19.38	5.28	14.83	33.78	20.46	16.31	35.21	41.97	28.32	22.59	31.15	10.65
Merged-chr2-118730660-3	chr2	118730543	118730743	+	933.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2205.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	13.33	11.82	17.11	12.87	21.68	11.6	5.65	13.96	17.51	17.07	23.11	14.1
Merged-chr2-75802106-2	chr2	75802006	75802206	+	933.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30071.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	7.27	4.78	19.4	5.63	18.82	16.31	12.29	20.22	11.8	12.05	19.09	11.59
Merged-chr16-94206074-3	chr16	94205986	94206186	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	84205.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	20.59	7.55	24.53	8.45	20.86	16.31	24.91	19.65	21.64	18.58	29.65	13.78
Merged-chr14-60273534-3	chr14	60273402	60273602	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8297.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	12.11	11.82	14.26	7.64	18.41	15.99	6.98	10.15	10.23	15.57	10.05	10.96
Merged-chr4-139208448-3	chr4	139208362	139208562	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14351.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	18.57	11.82	41.07	20.51	12.68	6.59	10.63	15.76	23.41	23.1	45.22	20.36
Merged-chr13-111555464-2	chr13	111555367	111555567	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-5558.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	16.56	24.15	39.36	20.11	7.77	15.37	9.63	12.31	5.51	4.02	5.53	5.64
Merged-chr6-125515670-3	chr6	125515557	125515757	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20897.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	20.59	10.31	21.11	23.73	21.27	11.29	21.26	16.37	17.31	5.02	13.57	5.33
Merged-chr4-59862582-3	chr4	59862492	59862692	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	L1_Mus4|LINE|L1	52464.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	13.73	13.83	13.12	11.66	22.5	30.73	24.91	20.47	18.1	19.08	18.09	8.46
Merged-chr1-72106395-2	chr1	72106297	72106497	+	933.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR87|LTR|ERVL?	-101202.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	1.01	0.0	3.22	15.55	9.72	9.97	7.77	10.62	13.56	23.62	8.77
Merged-chrX-99853387-2	chrX	99853289	99853489	+	933.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32320.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	1.21	3.27	2.85	9.25	15.14	13.48	9.3	14.94	7.67	6.03	14.57	8.14
Merged-chr15-97663888-3	chr15	97663788	97663988	+	933.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	41934.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	14.54	10.82	10.84	7.64	25.36	21.95	13.62	20.3	26.36	28.62	25.12	15.35
Merged-chr5-122145977-3	chr5	122145871	122146071	+	933.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7909.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	11.31	12.58	7.99	17.7	23.73	14.42	8.3	17.78	20.46	15.57	25.63	14.41
Merged-chr11-99230553-5	chr11	99230424	99230624	+	933.390503	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020618, exon 1 of 11)	5' UTR (NM_020618, exon 1 of 11)	493.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	8.88	10.82	5.7	24.94	9.41	11.6	12.29	7.74	12.59	13.56	14.07	15.66
Merged-chr2-163743500-3	chr2	163743402	163743602	+	933.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	6737.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	19.79	11.07	21.68	17.7	12.27	21.01	22.59	20.72	11.21	6.03	19.6	10.96
Merged-chr10-86731179-3	chr10	86731106	86731306	+	933.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153595, exon 5 of 5)	exon (NM_153595, exon 5 of 5)	18441.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	12.92	9.31	10.84	10.86	11.45	5.96	6.98	5.55	6.88	16.07	7.03	6.27
Merged-chr9-89827172-3	chr9	89827079	89827279	+	933.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040735, exon 1 of 6)	non-coding (NR_040735, exon 1 of 6)	660.0	NR_040735	74700.0	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA	14.94	13.33	15.4	7.64	18.82	13.17	12.95	16.15	37.17	28.62	23.62	16.29
Merged-chr2-124264520-2	chr2	124264426	124264626	+	933.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	-42168.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	8.08	3.27	17.11	15.69	10.64	4.7	11.29	20.55	5.31	5.52	12.56	1.25
Merged-chr7-5051636-3	chr7	5051535	5051735	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026900, exon 1 of 2)	5' UTR (NM_026900, exon 1 of 2)	103.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	15.75	17.36	9.7	14.48	15.96	13.8	16.28	20.41	13.18	21.09	16.08	9.71
Merged-chr1-150099934-4	chr1	150099826	150100026	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015466)	promoter-TSS (NR_015466)	-52.0	NR_015466	320019.0	Mm.353072	NR_015466	ENSMUSG00000097028	Ptgs2os	7530420F21Rik	prostaglandin-endoperoxide synthase 2, opposite strand	ncRNA	12.11	8.55	9.13	10.86	16.36	15.37	15.61	17.69	31.47	29.12	27.64	16.29
Merged-chr2-160086581-3	chr2	160086467	160086667	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69914.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	12.92	14.59	15.4	12.87	24.96	45.78	26.57	17.72	14.36	16.57	15.07	5.64
Merged-chr6-137704418-1	chr6	137704318	137704518	+	933.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30664.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	6.46	7.29	4.56	1.61	5.73	9.09	9.3	10.15	8.06	10.54	9.55	5.95
Merged-chr1-180387109-3	chr1	180387014	180387214	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-56565.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	12.92	11.32	34.23	11.26	16.36	13.17	5.65	18.17	28.91	10.54	21.61	15.66
Merged-chr15-63150094-1	chr15	63149994	63150194	+	933.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	329514.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	1.01	0.0	0.0	4.91	10.03	14.95	15.31	0.79	0.0	0.0	0.0
Merged-chr4-129811600-3	chr4	129811513	129811713	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-8866.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	27.46	24.65	15.4	10.46	26.18	62.09	22.92	28.54	35.21	60.25	33.16	24.43
Merged-chr15-31332848-1	chr15	31332748	31332948	+	933.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	34911.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	3.23	6.79	6.28	4.42	2.86	7.84	2.66	9.62	4.92	5.02	4.52	4.39
Merged-chr13-3725883-3	chr13	3725818	3726018	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78400.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	11.31	16.6	19.97	14.48	18.0	18.19	13.95	21.87	11.6	7.03	16.08	8.46
Merged-chr13-24776401-3	chr13	24776294	24776494	+	933.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-14457.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	22.21	17.86	15.4	6.44	13.5	19.76	8.64	11.21	21.83	36.65	21.1	22.87
Merged-chrX-155152816-3	chrX	155152718	155152918	+	933.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4969.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	15.75	14.34	23.96	18.5	19.64	17.25	27.24	33.36	22.62	10.54	28.64	18.17
Merged-chr5-135537480-3	chr5	135537389	135537589	+	933.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	7633.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	17.77	8.3	18.25	11.26	40.5	35.43	21.92	30.9	30.88	36.65	32.66	16.29
Merged-chr1-171442087-3	chr1	171441963	171442163	+	933.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	4502.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	25.44	21.88	35.94	11.66	21.68	18.5	17.27	17.75	26.16	19.58	13.57	22.87
Merged-chr10-127610770-3	chr10	127610661	127610861	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	10387.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	18.17	12.58	16.54	12.47	17.18	16.31	15.94	22.07	13.57	6.53	13.06	14.1
Merged-chr18-64516008-3	chr18	64515918	64516118	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142950, intron 1 of 14)	intron (NM_001142950, intron 1 of 14)	539.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	18.57	14.34	5.13	7.64	10.64	12.86	7.31	17.22	18.29	10.54	19.6	12.53
Merged-chr19-37209162-3	chr19	37209065	37209265	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027314, intron 1 of 5)	intron (NM_027314, intron 1 of 5)	1620.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	14.13	11.32	14.83	23.73	4.91	9.72	12.95	7.09	21.83	15.57	17.59	13.16
Merged-chr10-125995052-3	chr10	125994973	125995173	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177152, intron 4 of 18)	ORR1E|LTR|ERVL-MaLR	28854.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	10.9	14.34	16.54	8.85	20.46	16.93	17.27	16.65	24.78	18.58	44.72	10.96
Merged-chr6-88067925-3	chr6	88067822	88068022	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-16551.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	8.88	15.85	27.38	12.87	16.36	19.76	9.97	20.83	20.26	15.06	26.63	18.8
Merged-chr6-112091036-3	chr6	112091015	112091215	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119593.0	NR_027865	67336.0	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	12.11	15.59	17.68	26.95	12.27	11.92	16.94	23.58	7.28	7.03	12.56	8.77
Merged-chr10-75146832-3	chr10	75146759	75146959	+	933.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65214.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	8.08	12.07	13.12	8.85	17.59	18.19	13.29	16.54	16.92	10.54	24.62	10.65
Merged-chr15-58705517-3	chr15	58705458	58705658	+	933.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117869.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	12.52	9.31	13.12	13.27	19.23	10.35	13.29	16.46	15.34	9.54	12.06	10.02
Merged-chr5-76142050-3	chr5	76141954	76142154	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020611, intron 1 of 5)	intron (NM_020611, intron 1 of 5)	1781.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	12.52	15.85	13.12	3.62	11.05	17.56	11.96	19.82	31.47	25.11	29.65	10.65
Merged-chr3-109352510-1	chr3	109352410	109352610	+	933.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	MIRc|SINE|MIR	11827.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.85	2.77	4.56	8.85	8.59	13.17	11.63	8.38	7.47	3.01	9.04	3.76
Merged-chr19-32138875-3	chr19	32138766	32138966	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 7 of 9)	intron (NM_144792, intron 7 of 9)	-35726.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	22.21	16.6	19.97	12.07	19.23	25.4	12.95	30.34	19.67	12.05	15.07	17.86
Merged-chr17-7398495-3	chr17	7398398	7398598	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13193.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	12.92	7.29	6.28	13.27	9.0	12.23	19.6	14.92	52.52	54.23	66.83	44.17
Merged-chr2-61137639-2	chr2	61137547	61137747	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-162496.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	19.38	9.81	20.54	20.11	8.59	10.03	12.62	17.89	3.74	4.02	9.55	6.58
Merged-chr10-68725167-2	chr10	68725081	68725281	+	933.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1435.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	14.54	7.55	7.99	4.42	2.45	8.15	6.31	12.56	12.59	13.05	11.56	15.35
Merged-chr4-75317348-2	chr4	75317226	75317426	+	933.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-39034.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	5.65	5.03	6.28	4.42	7.36	3.14	14.95	5.92	10.03	6.03	15.07	4.7
Merged-chr12-108913072-2	chr12	108912965	108913165	+	933.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	18793.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.06	4.78	5.13	19.31	24.96	19.44	15.61	27.76	21.44	11.55	20.6	13.78
Merged-chr19-41086901-3	chr19	41086788	41086988	+	933.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-9775.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	12.92	16.6	11.41	16.89	11.86	15.99	7.97	12.53	17.31	24.1	14.57	23.18
Merged-chr2-166976572-3	chr2	166976470	166976670	+	933.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-11853.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	20.19	7.29	14.26	20.51	23.73	19.13	8.3	23.02	27.14	33.14	14.57	11.28
Merged-chr3-88424659-3	chr3	88424551	88424751	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	490.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	17.77	15.85	9.13	6.03	9.82	18.19	7.31	8.44	16.72	14.06	14.57	18.17
Merged-chr10-80678748-3	chr10	80678659	80678859	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2466.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	17.36	11.07	6.85	16.09	18.0	11.29	8.64	20.58	13.96	21.09	26.63	15.66
Merged-chr6-97506453-3	chr6	97506322	97506522	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-18602.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.25	11.57	6.85	7.24	7.36	9.09	10.3	6.34	10.23	5.02	4.52	11.28
Merged-chr9-89267775-3	chr9	89267716	89267916	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56432.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.65	12.58	15.97	14.48	26.59	19.44	21.59	28.93	15.93	23.1	37.69	12.53
Merged-chr18-46472962-3	chr18	46472873	46473073	+	933.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7157.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	13.33	15.85	30.8	14.88	26.59	22.26	25.58	40.23	13.96	14.56	11.56	13.47
Merged-chr11-70254189-3	chr11	70254110	70254310	+	933.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1160.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	16.56	16.35	14.26	8.04	7.36	27.59	8.97	8.89	19.08	27.62	12.56	12.22
Merged-chr5-36564768-3	chr5	36564680	36564880	+	933.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	17617.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	20.19	16.1	32.52	22.12	23.73	7.53	9.63	24.28	14.55	15.06	17.59	11.59
Merged-chr11-75760857-3	chr11	75760759	75760959	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009536, intron 5 of 5)	intron (NM_009536, intron 5 of 5)	27972.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	18.57	13.83	13.12	12.47	16.77	18.5	20.93	18.45	20.85	11.55	27.64	18.8
Merged-chrX-53797695-3	chrX	53797583	53797783	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291748)	promoter-TSS (NM_001291748)	23.0	NM_001291747	22441.0	Mm.379041	NM_011725	ENSMUSG00000054626	Xlr	-	X-linked lymphocyte-regulated	protein-coding	16.96	11.82	14.26	18.5	28.64	23.52	19.93	19.23	13.96	10.54	19.09	7.83
Merged-chr13-89740953-3	chr13	89740820	89741020	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	1592.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	14.13	9.81	4.56	5.23	4.91	17.25	9.97	6.0	14.95	19.08	19.6	13.47
Merged-chr11-110970659-3	chr11	110970546	110970746	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010604, intron 1 of 1)	MIRb|SINE|MIR	2613.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	12.92	11.82	15.97	11.26	20.46	15.99	13.95	19.79	18.88	15.57	14.57	8.77
Merged-chr10-87732184-3	chr10	87732102	87732302	+	933.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126063.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.27	12.32	18.83	17.7	10.64	9.09	11.96	20.05	17.11	11.55	27.13	13.78
Merged-chr1-93411164-1	chr1	93411064	93411264	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357556, intron 24 of 27)	intron (NM_001357556, intron 24 of 27)	34537.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	10.5	6.04	7.42	6.44	1.64	3.45	7.97	11.41	7.87	0.5	2.01	3.76
Merged-chr8-126837530-3	chr8	126837439	126837639	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11481.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.06	13.33	10.27	11.26	17.59	25.4	9.97	14.61	24.59	19.08	23.62	17.23
Merged-chrX-108813756-1	chrX	108813656	108813856	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081477, intron 6 of 40)	intron (NM_001081477, intron 6 of 40)	20599.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	3.23	3.02	2.28	12.07	2.05	4.08	6.64	12.06	5.51	2.01	3.52	5.33
Merged-chr16-26582265-2	chr16	26582142	26582342	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152416, intron 1 of 12)	intron (NR_152416, intron 1 of 12)	537.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	6.86	9.56	8.56	10.05	6.95	8.78	11.29	10.49	11.6	12.55	10.05	5.95
Merged-chr7-142342031-1	chr7	142341931	142342131	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	30228.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	12.92	13.08	22.82	6.84	11.45	31.98	8.97	7.79	17.9	22.59	11.05	11.28
Merged-chr15-63270559-1	chr15	63270459	63270659	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	209049.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.46	2.77	0.0	5.23	12.68	2.51	8.97	13.01	6.1	3.51	10.55	3.13
Merged-chr8-120488826-1	chr8	120488726	120488926	+	933.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-40.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.23	3.02	9.13	8.85	4.91	7.84	2.33	1.99	6.1	7.03	2.01	5.64
Merged-chr8-3648530-3	chr8	3648430	3648630	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7240.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	14.94	10.06	16.54	8.85	26.59	20.07	28.9	37.09	36.58	31.13	32.66	24.75
Merged-chr11-3382796-3	chr11	3382688	3382888	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-11384.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	25.44	34.46	25.1	11.66	25.36	58.32	19.27	10.37	43.07	54.73	28.64	13.16
Merged-chr6-47943180-3	chr6	47943066	47943266	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027963)	promoter-TSS (NR_027963)	-9.0	NR_027963	232785.0	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|Gm20494	zinc finger protein 783	ncRNA	19.38	14.59	23.39	11.66	27.41	22.26	14.95	26.36	24.98	22.09	48.74	10.96
Merged-chr14-47648394-3	chr14	47648309	47648509	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-902.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	21.8	20.88	18.83	18.5	23.73	31.36	19.27	22.46	12.39	12.55	15.07	6.89
Merged-chr7-87924759-1	chr7	87924659	87924859	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	L1M2|LINE|L1	340591.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.4	1.51	4.56	5.23	5.73	2.82	7.31	15.9	1.38	2.01	3.52	3.45
Merged-chr3-87377447-1	chr3	87377347	87377547	+	933.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	1060.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	2.02	1.26	1.14	1.21	1.64	3.76	1.66	1.09	13.37	3.01	18.09	9.4
Merged-chr7-132788020-1	chr7	132787920	132788120	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-1085.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.23	3.52	3.42	6.84	3.68	12.86	5.98	8.47	7.87	0.0	4.02	1.57
Merged-chr15-88837588-1	chr15	88837488	88837688	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	17942.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	2.83	2.77	4.56	1.61	11.45	8.47	1.66	9.87	3.34	5.02	8.54	7.52
Merged-chr7-64077768-1	chr7	64077668	64077868	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76067.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.25	6.29	2.85	2.82	3.68	3.14	1.66	8.19	6.69	7.03	4.52	2.19
Merged-chr6-28319785-3	chr6	28319688	28319888	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58187.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	11.31	6.54	4.56	15.69	13.91	15.99	3.32	12.5	23.8	26.11	44.22	17.23
Merged-chr6-57034821-2	chr6	57034714	57034914	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-1099.0	NM_134187	171205.0	Mm.222638	NM_134187	ENSMUSG00000061208	Vmn1r8	V1rc32	vomeronasal 1 receptor 8	protein-coding	4.04	3.77	12.55	16.89	18.0	28.85	20.93	37.07	9.64	11.55	5.53	9.71
Merged-chr13-97974987-1	chr13	97974887	97975087	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_012026, intron 16 of 35)	intron (NM_012026, intron 16 of 35)	223875.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	8.08	4.53	20.54	12.87	4.09	4.39	7.64	4.54	9.24	5.52	10.55	5.95
Merged-chr11-8762407-3	chr11	8762299	8762499	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97864.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.08	13.83	18.25	11.66	24.55	14.74	14.28	26.47	29.9	26.11	22.11	15.66
Merged-chr15-6571069-3	chr15	6570951	6571151	+	932.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8796.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	12.11	14.84	13.69	5.23	7.36	22.58	7.97	15.08	21.44	21.09	19.09	13.16
Merged-chr4-136146354-5	chr4	136146243	136146443	+	932.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008321)	TTS (NM_008321)	2521.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	12.52	8.55	13.12	9.65	15.96	12.86	15.61	18.2	27.34	22.09	13.06	19.74
Merged-chr3-88191282-3	chr3	88191170	88191370	+	932.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13485.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	11.31	21.13	20.54	12.07	11.45	29.16	10.3	14.07	25.96	16.07	19.6	9.4
Merged-chr11-63129659-3	chr11	63129549	63129749	+	932.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302261, intron 1 of 3)	intron (NM_001302261, intron 1 of 3)	667.0	NM_001302261	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	16.96	11.07	21.11	10.46	15.55	14.74	17.61	22.29	14.36	11.55	32.66	16.29
Merged-chr7-16239875-3	chr7	16239760	16239960	+	932.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	2471.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	15.75	9.56	10.27	11.66	16.36	15.05	15.94	19.54	19.08	15.57	14.07	10.96
Merged-chr15-86220296-3	chr15	86220261	86220461	+	932.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	5902.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	12.52	15.34	13.12	23.33	10.23	6.9	28.57	28.01	10.03	10.04	12.56	14.1
Merged-chr16-27435075-3	chr16	27434934	27435134	+	932.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025615, intron 5 of 9)	intron (NM_001025615, intron 5 of 9)	46078.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	10.9	10.56	15.97	8.04	20.05	12.54	19.93	21.22	11.21	8.03	18.59	10.34
Merged-chr17-88597235-3	chr17	88597155	88597355	+	932.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29300.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	11.31	10.31	6.85	9.65	13.91	19.44	11.29	15.95	16.72	14.06	23.62	13.47
Merged-chr1-130417469-3	chr1	130417376	130417576	+	932.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007827, intron 4 of 9)	intron (NM_007827, intron 4 of 9)	-5348.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	9.69	14.09	12.55	17.29	16.36	26.97	12.62	9.28	28.72	41.67	59.8	13.78
Merged-chr12-55484841-4	chr12	55484792	55484992	+	932.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7755.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	11.31	23.64	1.14	7.24	11.05	21.95	4.65	4.32	21.05	16.57	4.02	2.19
Merged-chr18-65580960-6	chr18	65580868	65581068	+	932.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207255, intron 1 of 5)	CpG	738.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	12.92	6.29	2.28	5.23	8.59	15.99	12.62	12.31	10.42	9.54	11.56	7.83
Merged-chrX-134276909-3	chrX	134276812	134277012	+	932.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172540)	promoter-TSS (NM_172540)	72.0	NM_172540	215201.0	Mm.289368	NM_172540	ENSMUSG00000067369	Trmt2b	4732479N06Rik	TRM2 tRNA methyltransferase 2B	protein-coding	8.88	12.32	3.42	13.67	25.77	23.83	20.93	30.11	16.13	15.06	23.11	13.16
Merged-chr4-144890800-3	chr4	144890688	144890888	+	932.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2039.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	13.73	15.09	14.26	12.47	13.91	16.62	4.65	10.15	23.41	22.09	18.59	14.1
Merged-chr7-99549888-3	chr7	99549767	99549967	+	932.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-2402.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	18.98	22.13	21.11	23.73	23.73	26.03	13.29	18.31	9.64	17.57	21.61	12.53
Merged-chr10-9882026-3	chr10	9881922	9882122	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	MTB_Mm|LTR|ERVL-MaLR	19018.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	6.86	10.06	13.12	7.24	15.96	11.92	12.62	11.16	23.41	9.54	8.54	17.54
Merged-chr7-118382146-3	chr7	118382056	118382256	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362179, intron 7 of 7)	intron (NM_001362179, intron 7 of 7)	61404.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	15.75	6.04	11.98	11.66	18.82	16.31	13.95	18.22	25.18	21.59	28.14	19.42
Merged-chr5-64900436-3	chr5	64900333	64900533	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32266.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	13.73	13.08	26.24	16.89	6.95	23.2	8.64	19.04	18.1	17.07	19.6	9.08
Merged-chr8-111923682-3	chr8	111923590	111923790	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033321, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	10123.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	14.94	19.37	11.98	15.28	13.91	10.98	16.94	22.74	17.9	21.09	28.14	19.74
Merged-chr7-101848105-3	chr7	101847985	101848185	+	932.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303239, intron 2 of 5)	ORR1B1|LTR|ERVL-MaLR	-2754.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	14.54	17.61	10.27	6.44	11.45	19.76	11.29	12.28	17.9	17.07	26.63	21.62
Merged-chr3-69657840-3	chr3	69657734	69657934	+	932.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58874.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	24.23	18.61	22.25	8.85	33.14	26.65	25.24	29.33	26.36	16.07	12.06	10.34
Merged-chr9-61242334-3	chr9	61242233	61242433	+	932.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51476.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	16.15	12.58	13.69	20.91	24.14	29.48	11.96	17.3	27.34	18.08	26.63	14.41
Merged-chr17-67351637-4	chr17	67351552	67351752	+	932.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2807.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	16.15	18.61	25.1	10.86	20.46	31.36	13.95	27.06	34.22	32.13	38.19	24.43
Merged-chr10-80576606-3	chr10	80576636	80576836	+	932.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	560.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	16.15	7.8	8.56	8.85	5.32	10.03	5.31	7.91	11.41	4.52	6.03	7.21
Merged-chr12-113017613-3	chr12	113017503	113017703	+	932.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	3095.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	34.32	17.86	17.11	33.38	8.59	23.2	13.95	19.93	17.7	18.58	20.1	10.02
Merged-chr15-80977841-3	chr15	80977736	80977936	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134091)	promoter-TSS (NM_134091)	71.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	15.34	15.09	14.26	9.25	23.32	14.42	15.28	11.75	16.92	21.09	15.07	16.92
Merged-chr11-16638615-3	chr11	16638580	16638780	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113523.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	11.31	10.82	10.84	20.51	19.23	12.23	12.62	22.68	21.44	13.56	15.07	5.33
Merged-chr6-98846457-3	chr6	98846361	98846561	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	181837.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	16.15	11.07	11.98	25.74	4.09	16.31	5.98	10.65	23.21	13.05	17.59	5.64
Merged-chr2-164912363-3	chr2	164912263	164912463	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	-613.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	13.33	6.29	11.98	1.61	17.18	13.8	17.94	17.61	10.42	10.04	18.59	16.92
Merged-chr2-140790565-3	chr2	140790467	140790667	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-119091.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	6.46	10.06	4.56	8.85	29.86	40.76	15.94	28.54	31.67	42.18	41.71	15.98
Merged-chr14-25379118-3	chr14	25379045	25379245	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80040.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	31.9	32.7	11.98	10.05	35.59	78.39	42.52	25.85	34.22	27.11	31.15	14.41
Merged-chr18-5127411-3	chr18	5127322	5127522	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	38309.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	12.11	11.82	14.83	8.45	11.86	22.26	7.31	11.47	17.7	20.59	17.08	14.1
Merged-chr6-53995742-2	chr6	53995634	53995834	+	932.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 1 of 3)	MLT1H2|LTR|ERVL-MaLR	17043.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	4.44	5.28	22.82	7.64	10.64	9.09	16.28	12.64	26.36	14.56	29.65	17.23
Merged-chr5-43842901-2	chr5	43842777	43842977	+	932.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23984.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	8.88	1.51	13.69	5.23	14.32	13.17	13.95	8.64	13.77	15.06	7.54	7.83
Merged-chr17-10372440-3	chr17	10372340	10372540	+	932.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	47838.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	17.36	7.55	6.28	10.05	8.59	9.09	9.3	7.82	26.75	15.57	15.58	9.4
Merged-chr2-27025754-3	chr2	27025651	27025851	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177627, intron 3 of 8)	L2|LINE|L2	2247.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	16.96	17.1	15.97	8.85	44.59	54.25	17.61	19.07	44.45	38.16	47.74	27.25
Merged-chr6-67376221-3	chr6	67376137	67376337	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008354)	promoter-TSS (NM_008354)	-49.0	NM_008354	16162.0	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	27.86	17.1	26.24	20.11	34.77	35.12	43.18	56.1	17.11	9.54	17.59	12.84
Merged-chr1-180422278-3	chr1	180422183	180422383	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	61221.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	12.52	15.59	20.54	10.05	18.41	13.17	14.62	12.79	29.9	20.59	25.12	23.18
Merged-chr11-44545373-3	chr11	44545287	44545487	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	26010.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	29.07	10.06	27.95	16.09	25.36	12.86	17.94	28.46	22.42	28.12	38.19	14.41
Merged-chr16-13866843-3	chr16	13866742	13866942	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36303.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	14.54	17.86	31.95	22.52	14.73	9.09	15.94	18.08	10.82	13.05	22.11	10.02
Merged-chr4-141642249-3	chr4	141642167	141642367	+	932.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 3 of 18)	intron (NM_001347237, intron 3 of 18)	-18433.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	23.42	18.36	26.81	12.47	19.64	13.17	5.65	10.09	32.65	31.13	32.16	24.75
Merged-chr3-87028951-3	chr3	87028862	87029062	+	932.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-29622.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	17.77	26.41	18.25	23.33	14.73	10.98	12.95	15.14	13.96	11.05	18.09	15.66
Merged-chr8-72268544-3	chr8	72268421	72268621	+	932.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28503.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	17.77	9.81	17.11	14.88	54.0	40.14	53.81	71.52	14.55	7.53	18.09	9.4
Merged-chr9-100400563-3	chr9	100400489	100400689	+	932.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85884.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	23.82	19.87	18.25	33.38	29.86	10.66	19.93	17.97	31.47	21.09	16.08	19.42
Merged-chr3-27611332-3	chr3	27611230	27611430	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-26335.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	11.71	20.63	6.85	6.03	8.59	34.49	7.97	9.25	22.82	17.07	23.11	5.01
Merged-chr3-38106194-3	chr3	38106091	38106291	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101928.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	9.69	13.58	23.96	13.67	11.05	14.11	17.94	26.36	13.57	16.57	19.09	13.47
Merged-chr7-19500544-4	chr7	19500392	19500592	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7839.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	6.86	6.29	5.7	14.88	6.95	3.14	9.3	9.08	15.93	16.07	12.56	9.71
Merged-chr17-8836445-3	chr17	8836339	8836539	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-13546.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	14.13	33.96	15.97	11.66	25.77	44.53	18.27	14.5	25.77	18.08	23.11	3.13
Merged-chr14-46994457-3	chr14	46994354	46994554	+	932.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6886.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	17.36	6.79	6.28	18.1	11.45	15.68	19.27	19.99	17.7	21.09	12.06	9.4
Merged-chr17-57357813-3	chr17	57357719	57357919	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-867.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	10.09	10.82	13.69	12.87	18.41	26.03	11.96	13.74	21.24	28.62	33.67	16.6
Merged-chr3-88504543-3	chr3	88504454	88504654	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1202.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	16.15	19.62	15.97	5.63	17.18	26.65	10.3	11.3	26.55	37.16	34.67	12.22
Merged-chr9-84545541-2	chr9	84545418	84545618	+	932.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-228880.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	1.21	3.77	6.28	5.63	5.73	8.15	4.32	8.72	100.31	38.16	75.87	58.89
Merged-chr15-82047471-4	chr15	82047321	82047521	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011482, intron 1 of 2)	CpG	177.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	18.17	20.88	14.83	11.66	12.27	17.25	10.96	7.49	19.67	18.08	16.58	16.29
Merged-chr2-58940661-1	chr2	58940561	58940761	+	932.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	185477.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.81	2.01	6.85	3.22	9.82	3.76	6.64	12.0	3.54	3.51	5.02	7.52
Merged-chr5-67828608-3	chr5	67828533	67828733	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	MLT1A|LTR|ERVL-MaLR	18798.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	9.69	16.85	19.97	20.11	30.27	16.93	19.93	49.21	32.65	28.62	53.77	20.99
Merged-chr14-74919342-3	chr14	74919241	74919441	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	28536.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	13.33	15.09	38.22	8.45	9.41	20.38	3.65	9.08	24.19	15.06	7.03	8.77
Merged-chr3-104937920-3	chr3	104937819	104938019	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23790.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	12.92	6.29	6.28	5.63	23.73	25.09	13.62	33.0	34.81	29.12	27.13	21.3
Merged-chr9-96365608-2	chr9	96365517	96365717	+	932.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	12.11	4.02	5.7	1.61	5.32	4.08	16.94	13.68	31.08	12.05	23.62	15.35
Merged-chr10-20770205-3	chr10	20770129	20770329	+	932.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45151.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	21.4	13.33	6.85	20.11	19.23	14.42	12.62	20.8	31.08	12.55	23.62	14.1
Merged-chr1-177260563-3	chr1	177260457	177260657	+	932.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11790.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	18.17	14.59	8.56	20.11	12.68	16.31	9.63	12.03	20.65	22.59	16.08	8.77
Merged-chr6-134615489-3	chr6	134615386	134615586	+	932.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17002.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	19.38	18.86	13.12	13.67	32.32	11.92	7.31	14.52	38.94	35.65	40.2	14.41
Merged-chr8-117209318-3	chr8	117209218	117209418	+	932.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47701.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	23.42	7.8	5.13	15.69	15.14	12.86	12.29	18.22	26.16	29.62	31.66	11.9
Merged-chr15-59717209-3	chr15	59717094	59717294	+	932.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68540.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	13.33	12.32	13.12	12.87	20.05	29.48	12.95	23.02	20.06	22.59	17.08	6.58
Merged-chr10-34267549-3	chr10	34267452	34267652	+	932.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14638.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	9.29	19.37	15.4	14.88	22.09	28.54	18.93	22.82	27.73	26.11	38.69	20.05
Merged-chr2-167351106-3	chr2	167351001	167351201	+	932.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1923.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	16.56	12.58	19.4	10.05	18.82	25.09	12.29	26.02	26.16	9.04	21.61	19.74
Merged-chr13-34710450-2	chr13	34710350	34710550	+	932.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-29192.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	5.25	3.27	12.55	7.64	16.77	12.23	16.61	16.77	13.37	13.56	15.07	4.39
Merged-chr2-117962112-3	chr2	117962007	117962207	+	932.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	140179.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	12.92	9.81	11.98	15.28	26.18	21.01	30.23	35.38	19.28	11.05	35.17	22.24
Merged-chr11-45595537-3	chr11	45595405	45595605	+	932.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-212578.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	28.27	41.0	29.09	45.45	38.46	42.96	39.2	80.47	22.03	13.05	27.13	13.78
Merged-chr11-68521569-3	chr11	68521460	68521660	+	932.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 2 of 19)	intron (NM_001004435, intron 2 of 19)	18541.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	14.54	18.36	18.25	12.47	29.46	26.97	19.6	21.5	21.83	23.1	14.57	13.16
Merged-chr18-67607545-3	chr18	67607475	67607675	+	932.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33780.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	13.33	8.3	12.55	23.33	20.05	15.05	16.61	19.93	12.59	16.07	18.09	15.04
Merged-chr19-53496806-1	chr19	53496706	53496906	+	932.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-32010.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	1.62	1.51	6.28	6.84	4.09	10.03	10.3	8.66	2.36	1.0	2.51	0.0
Merged-chr7-100159259-3	chr7	100159162	100159362	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026010)	promoter-TSS (NM_026010)	-15.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	16.56	14.59	8.56	12.07	17.59	14.42	7.97	11.75	20.65	30.13	21.61	18.17
Merged-chr8-122475143-3	chr8	122475050	122475250	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	914.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	5.25	12.83	14.26	15.69	20.86	16.62	13.62	19.12	15.14	18.58	17.08	8.14
Merged-chr5-123150030-5	chr5	123149973	123150173	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 6 of 16)	MIRb|SINE|MIR	7880.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	10.5	5.79	4.56	10.05	10.64	10.66	7.31	7.32	11.21	9.04	10.55	10.65
Merged-chr9-45202541-3	chr9	45202452	45202652	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1523.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	14.54	7.55	6.85	10.46	18.0	21.64	23.92	13.01	15.34	5.52	15.07	4.7
Merged-chr2-30699928-3	chr2	30699809	30700009	+	932.327759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-21301.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	16.56	18.36	12.55	16.49	17.59	18.81	12.95	13.74	27.93	21.09	14.07	7.52
Merged-chr6-29166412-3	chr6	29166315	29166515	+	932.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	17.36	17.61	26.81	11.66	7.77	28.22	17.27	17.19	16.33	24.1	40.7	12.22
Merged-chr2-80581078-5	chr2	80580918	80581118	+	932.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355410, exon 1 of 32)	5' UTR (NM_001355410, exon 1 of 32)	164.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.81	1.26	1.14	0.0	6.95	10.03	3.65	8.69	8.46	9.54	7.54	5.01
Merged-chr12-59216940-3	chr12	59216874	59217074	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	2509.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	6.86	16.1	7.99	10.86	11.05	17.25	17.61	7.09	17.9	23.1	21.61	15.98
Merged-chr8-120511044-3	chr8	120510948	120511148	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	PB1D7|SINE|Alu	22182.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	21.0	15.85	6.85	2.41	17.18	32.61	7.64	10.37	30.68	14.56	16.08	10.34
Merged-chr1-54449106-3	chr1	54449047	54449247	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10121.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	14.54	14.34	17.68	6.03	13.09	7.21	24.91	12.45	10.82	12.05	12.06	5.33
Merged-chr4-126968244-3	chr4	126968158	126968358	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	-335.0	NM_001114399	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	14.54	19.62	11.41	11.66	18.0	34.49	21.59	11.86	32.85	30.13	31.66	11.9
Merged-chr3-62458537-3	chr3	62458432	62458632	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48456.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	17.77	10.06	21.68	11.66	7.77	11.6	18.27	24.17	15.34	12.55	28.14	9.71
Merged-chr8-70868767-3	chr8	70868765	70868965	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026964, intron 3 of 4)	CpG-14136	4625.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	6.06	7.04	8.56	3.22	9.82	29.79	11.63	12.76	7.67	9.54	6.53	9.08
Merged-chr13-94868805-3	chr13	94868712	94868912	+	932.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6815.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	9.29	12.83	10.27	15.28	26.59	24.46	8.3	23.78	29.11	20.08	29.65	10.96
Merged-chr1-120072295-3	chr1	120072203	120072403	+	932.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019432, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	1477.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	14.94	13.08	10.84	13.67	16.77	12.23	4.65	11.52	13.18	15.06	8.04	5.95
Merged-chr15-8463026-2	chr15	8462924	8463124	+	932.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18561.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	7.27	7.55	0.57	2.41	7.36	14.11	13.95	16.91	13.18	16.57	32.66	14.72
Merged-chr11-6456293-3	chr11	6456188	6456388	+	932.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-11845.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	8.48	9.56	18.25	18.5	4.09	18.19	5.31	14.27	17.51	7.53	11.56	5.01
Merged-chr4-46508406-2	chr4	46508312	46508512	+	932.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029077, intron 5 of 5)	intron (NM_029077, intron 5 of 5)	19083.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	10.9	11.07	13.69	17.7	9.0	4.7	3.32	12.31	14.55	5.52	7.03	5.95
Merged-chr3-81036281-3	chr3	81036207	81036407	+	932.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019971)	promoter-TSS (NM_019971)	-109.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	16.56	10.31	16.54	10.46	28.23	15.37	23.58	16.54	19.87	15.57	17.08	11.28
Merged-chr13-67728789-3	chr13	67728669	67728869	+	932.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027969)	promoter-TSS (NR_027969)	404.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	10.09	14.59	13.12	6.84	9.41	12.23	25.24	14.61	14.55	8.54	13.06	11.28
Merged-chr9-44721421-3	chr9	44721312	44721512	+	932.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153537, intron 4 of 21)	CpG	13786.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	33.92	16.35	26.24	13.27	39.27	27.91	24.91	30.34	19.87	22.09	11.56	7.21
Merged-chr4-134510984-3	chr4	134510879	134511079	+	932.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081099)	promoter-TSS (NM_001081099)	-20.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	29.07	20.88	7.99	11.26	23.32	17.87	6.64	15.64	41.7	36.15	41.2	31.01
Merged-chr18-34889084-3	chr18	34888997	34889197	+	932.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27890.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	15.75	14.59	12.55	10.05	12.27	12.23	9.63	6.81	22.42	15.06	12.56	11.28
Merged-chr1-74775943-3	chr1	74775848	74776048	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	4056.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	26.65	26.66	25.67	15.69	9.82	39.51	8.97	6.73	37.76	17.07	31.15	8.46
Merged-chr13-45005330-3	chr13	45005228	45005428	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3232.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	10.5	16.35	23.39	23.73	17.18	29.48	26.24	28.01	16.92	10.04	5.53	13.47
Merged-chr7-48749413-3	chr7	48749324	48749524	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39579.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	10.09	14.84	18.25	12.87	9.0	15.37	14.95	18.39	18.29	20.59	26.63	12.84
Merged-chr15-36727907-5	chr15	36727781	36727981	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	63051.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	6.46	8.55	4.56	11.66	7.36	15.05	8.97	8.92	6.88	14.06	16.58	14.41
Merged-chr13-73488872-2	chr13	73488773	73488973	+	932.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 2 of 13)	intron (NM_145376, intron 2 of 13)	21490.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	2.02	3.52	22.82	3.62	4.91	13.17	11.29	16.99	10.62	10.54	16.58	14.41
Merged-chr6-38823985-3	chr6	38823883	38824083	+	932.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	13328.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	10.9	6.04	21.68	22.52	26.59	10.66	22.92	34.29	19.67	18.58	15.07	15.04
Merged-chr7-47052560-3	chr7	47052463	47052663	+	932.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1923.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	16.96	11.32	5.7	12.07	20.46	22.26	21.26	25.23	20.26	16.57	27.13	14.41
Merged-chr12-3110039-3	chr12	3109943	3110143	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-125748.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	46.03	43.77	41.64	37.0	47.05	24.46	23.92	41.89	12.0	14.06	8.54	25.69
Merged-chr1-182255243-3	chr1	182255141	182255341	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	26954.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	21.0	11.07	29.66	14.88	15.55	22.58	19.27	21.81	8.06	10.04	17.08	13.16
Merged-chr3-123256870-3	chr3	123256773	123256973	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-10623.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	21.0	15.34	17.11	22.93	20.46	46.1	16.61	19.35	52.32	44.69	77.88	14.72
Merged-chr4-129578724-3	chr4	129578632	129578832	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182783)	promoter-TSS (NM_182783)	-152.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	13.73	10.31	27.38	21.32	20.86	14.11	19.6	27.03	13.57	17.07	15.58	11.9
Merged-chr11-44373043-3	chr11	44372902	44373102	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27061.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	15.34	8.8	6.28	12.07	12.27	10.66	9.3	9.48	43.27	47.2	32.66	21.3
Merged-chr10-7052879-3	chr10	7052765	7052965	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29680.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	19.38	18.11	31.38	30.97	30.68	15.05	40.52	42.17	10.62	12.05	24.62	11.28
Merged-chr9-42944498-3	chr9	42944386	42944586	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-115.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	18.57	13.33	13.69	22.93	15.55	14.11	11.96	13.04	16.33	13.56	18.09	10.02
Merged-chr11-69118008-3	chr11	69117912	69118112	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2441.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	23.82	24.65	17.11	14.48	17.59	12.54	14.28	20.19	16.33	11.05	9.55	8.77
Merged-chr2-45110842-1	chr2	45110742	45110942	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-109.0	NR_149354	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	16.15	7.04	15.4	5.23	6.95	13.48	7.31	6.7	16.92	5.52	8.04	3.45
Merged-chr9-114844865-1	chr9	114844765	114844965	+	932.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-713.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	10.5	10.06	14.26	12.07	14.32	16.31	9.3	15.81	12.78	6.53	9.04	11.9
Merged-chr5-140795061-1	chr5	140794961	140795161	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35370.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	8.08	3.02	5.7	4.42	11.45	2.82	11.96	14.3	2.16	3.01	0.5	0.0
Merged-chr10-122617219-3	chr10	122617099	122617299	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31140.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	6.46	4.28	18.25	32.98	12.68	9.72	15.61	24.93	15.34	24.1	19.6	27.88
Merged-chr1-144312344-3	chr1	144312258	144312458	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63254.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	21.8	11.82	25.1	32.98	17.18	22.89	9.63	14.27	39.34	13.56	31.15	20.68
Merged-chr8-84465751-1	chr8	84465651	84465851	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 3 of 47)	RLTR12B|LTR|ERVK	50387.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.23	1.01	1.14	4.02	5.73	11.92	12.95	11.97	0.79	0.0	0.0	0.0
Merged-chr16-76199560-1	chr16	76199460	76199660	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76947.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	3.23	1.01	6.85	7.64	4.09	1.57	6.98	8.07	1.77	0.5	3.52	2.82
Merged-chr16-77284421-1	chr16	77284321	77284521	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44907.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.04	0.75	5.7	12.07	4.91	8.15	4.32	13.49	3.93	2.01	12.56	1.88
Merged-chr11-53479813-1	chr11	53479713	53479913	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183173, exon 1 of 1)	exon (NM_183173, exon 1 of 1)	382.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	2.83	1.26	0.0	0.0	2.86	1.25	7.31	3.06	2.36	2.51	1.51	3.76
Merged-chr9-31211099-1	chr9	31210999	31211199	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 1 of 17)	CpG	749.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	6.46	7.04	5.7	12.07	4.5	7.21	10.3	2.75	7.87	7.03	5.53	8.46
Merged-chr4-132610777-2	chr4	132610686	132610886	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28260.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	8.88	3.77	3.42	4.42	26.18	21.64	11.96	10.79	17.51	21.09	14.57	10.65
Merged-chr1-156593487-2	chr1	156593378	156593578	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	34691.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.42	2.77	1.14	2.01	6.95	4.39	3.32	8.19	20.06	16.07	6.03	4.7
Merged-chr14-73446144-1	chr14	73446044	73446244	+	932.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60855.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	14.13	8.8	2.28	6.03	15.14	11.6	8.97	7.74	13.57	16.07	8.04	5.01
Merged-chr2-22933754-3	chr2	22933676	22933876	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	38254.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	15.75	5.79	14.26	24.13	5.32	7.53	12.29	19.07	27.93	28.62	37.18	23.49
Merged-chr14-122830598-1	chr14	122830498	122830698	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-82432.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	2.83	6.54	16.54	14.48	2.05	3.14	1.99	3.42	6.88	4.52	4.02	5.01
Merged-chr9-61671241-2	chr9	61671143	61671343	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243267.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	1.51	0.0	0.0	13.09	14.74	15.61	17.86	18.29	9.04	23.11	18.17
Merged-chr3-84745776-1	chr3	84745676	84745876	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69801.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.0	0.0	0.0	0.41	2.82	1.0	2.78	0.98	1.51	1.0	0.0
Merged-chr12-75735096-1	chr12	75734996	75735196	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030750, exon 1 of 3)	exon (NM_030750, exon 1 of 3)	633.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	9.69	6.79	14.26	5.23	8.59	5.33	13.95	3.87	8.85	5.52	5.53	9.08
Merged-chr2-61645655-1	chr2	61645555	61645755	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149323, intron 8 of 9)	intron (NR_149323, intron 8 of 9)	52558.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.4	3.27	2.85	6.44	5.73	4.39	11.96	8.8	2.56	9.04	2.01	3.13
Merged-chr8-104247965-3	chr8	104247857	104248057	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 1 of 8)	intron (NR_045642, intron 1 of 8)	601.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.67	6.79	8.56	13.67	12.27	10.35	16.28	12.0	17.7	9.54	13.06	16.6
Merged-chr10-98966865-3	chr10	98966792	98966992	+	931.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	51740.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	9.29	8.55	10.84	13.27	10.64	13.48	9.3	18.5	21.64	14.56	18.59	4.39
Merged-chr10-51534838-3	chr10	51534719	51534919	+	931.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	43921.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	11.31	10.82	11.41	12.87	24.96	19.44	15.61	2.1	16.13	18.08	13.57	11.9
Merged-chr8-75089122-3	chr8	75089013	75089213	+	931.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4505.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	12.92	9.56	19.97	6.44	17.18	12.86	12.62	10.54	18.88	9.04	10.05	13.16
Merged-chr7-80583076-3	chr7	80582970	80583170	+	931.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47951.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	16.96	17.86	6.85	10.46	20.05	21.64	17.61	15.28	31.47	17.57	21.61	13.78
Merged-chr18-65692351-3	chr18	65692245	65692445	+	931.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5923.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	20.59	9.06	5.13	17.29	11.05	13.17	11.29	18.98	14.95	15.06	11.05	14.41
Merged-chr12-55552793-3	chr12	55552669	55552869	+	931.8936769999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-12436.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	8.48	10.56	7.99	17.7	12.27	15.05	14.28	10.18	12.98	9.04	17.08	11.9
Merged-chr13-52578108-3	chr13	52578021	52578221	+	931.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4896.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	19.79	12.07	26.24	13.27	31.09	13.48	19.6	27.93	10.62	5.52	17.59	10.02
Merged-chr11-79023584-3	chr11	79023490	79023690	+	931.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045873)	promoter-TSS (NR_045873)	-7.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	14.13	18.86	15.97	10.86	21.68	30.1	12.29	14.07	16.13	16.07	26.13	8.77
Merged-chr17-5615147-3	chr17	5615020	5615220	+	931.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122520.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.08	9.06	18.25	14.48	22.09	24.46	19.93	32.52	28.52	18.58	29.14	16.92
Merged-chr2-75778337-3	chr2	75778259	75778459	+	931.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-53818.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	12.52	14.59	32.52	8.45	24.96	26.03	34.88	32.52	31.47	17.57	31.15	21.62
Merged-chr9-13495735-1	chr9	13495635	13495835	+	931.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64374.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	4.28	2.85	2.41	12.27	12.54	11.96	20.61	3.74	7.03	8.04	3.45
Merged-chr8-77112989-3	chr8	77112935	77113135	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	210527.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	6.86	10.06	7.42	6.44	15.14	13.48	9.3	14.83	12.78	15.57	16.08	11.28
Merged-chr5-118376629-3	chr5	118376539	118376739	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131412.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	17.77	9.31	7.99	4.42	16.36	38.57	9.63	18.39	16.72	7.53	14.57	7.52
Merged-chr13-100576105-3	chr13	100576007	100576207	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23389.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	20.59	11.82	10.84	9.65	18.82	15.99	13.29	26.55	46.22	29.12	52.76	25.37
Merged-chrX-13295015-3	chrX	13294915	13295115	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13993.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	12.11	22.89	12.55	10.05	19.64	20.7	12.62	13.51	15.54	15.57	9.55	11.28
Merged-chr14-27096949-3	chr14	27096861	27097061	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47032.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	10.9	11.57	12.55	12.47	18.41	17.87	17.94	17.19	23.6	28.12	33.67	18.8
Merged-chr19-5713697-3	chr19	5713596	5713796	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9225.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	14.13	19.12	15.4	3.22	18.82	34.49	10.63	9.17	19.08	29.12	15.07	10.96
Merged-chr8-70906358-1	chr8	70906258	70906458	+	931.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173013, intron 1 of 6)	CpG	384.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	16.56	9.06	2.85	4.42	18.0	15.37	6.31	10.65	16.92	7.03	5.53	8.77
Merged-chrX-107330060-3	chrX	107329976	107330176	+	931.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45730.0	NM_001177782	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	7.27	11.82	15.4	32.18	22.09	22.26	18.6	34.79	20.06	22.59	30.65	17.23
Merged-chr10-81520231-3	chr10	81520136	81520336	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	3989.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	19.79	14.84	9.13	16.89	13.91	8.78	11.29	12.28	18.1	19.58	16.58	16.6
Merged-chr10-41937369-3	chr10	41937258	41937458	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	49919.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	7.27	15.34	29.09	13.27	15.55	21.95	20.26	13.15	23.01	20.59	31.15	12.53
Merged-chr5-117373598-3	chr5	117373485	117373685	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 4 of 8)	intron (NM_021539, intron 4 of 8)	15438.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	12.52	12.32	23.39	5.63	35.59	26.97	41.19	25.21	26.55	14.56	17.59	7.21
Merged-chr17-27534856-3	chr17	27534738	27534938	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21736.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	12.52	14.34	9.13	5.63	10.64	19.76	1.66	9.67	14.16	8.54	23.62	3.13
Merged-chr9-32040226-3	chr9	32040121	32040321	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-75915.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	15.34	18.86	23.39	23.33	10.64	6.59	8.97	28.15	20.46	7.03	35.17	13.16
Merged-chr9-66277170-4	chr9	66277023	66277223	+	931.775024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73327.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	8.88	4.78	2.28	4.42	9.0	9.41	16.28	8.52	9.64	5.52	6.53	7.83
Merged-chr16-92398873-3	chr16	92398711	92398911	+	931.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1267.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	12.92	4.78	3.99	13.27	20.46	23.83	13.95	12.42	15.54	23.6	23.62	8.46
Merged-chr7-120677503-3	chr7	120677382	120677582	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164580)	promoter-TSS (NM_001164580)	-138.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	25.44	20.12	12.55	20.91	25.36	18.19	27.24	23.5	21.05	16.07	41.2	11.59
Merged-chr4-59244931-3	chr4	59244830	59245030	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15121.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	10.5	15.85	15.4	4.83	15.96	19.76	7.97	12.53	25.96	26.11	19.09	15.98
Merged-chr2-11288639-3	chr2	11288550	11288750	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 15 of 17)	intron (NM_008859, intron 15 of 17)	-50839.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.65	9.81	6.28	15.28	19.64	9.72	12.62	12.64	20.85	10.54	34.67	14.72
Merged-chr4-133707134-3	chr4	133707059	133707259	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	9949.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	32.3	21.63	31.95	26.55	25.77	15.68	10.96	29.89	30.09	11.55	20.6	12.84
Merged-chr7-143466364-3	chr7	143466253	143466453	+	931.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5303.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	10.5	13.83	18.83	12.87	10.23	7.53	12.62	9.45	8.46	21.09	13.06	11.9
Merged-chr15-31572521-3	chr15	31572434	31572634	+	931.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181588, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3701.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	16.56	15.85	14.83	18.5	9.41	19.13	12.95	21.79	16.33	14.06	21.1	10.96
Merged-chr2-146959439-2	chr2	146959378	146959578	+	931.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033298, intron 12 of 13)	intron (NM_001033298, intron 12 of 13)	-53521.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.44	3.02	2.85	4.02	12.27	4.7	4.65	6.64	19.28	8.54	27.64	19.42
Merged-chr17-50121331-2	chr17	50121223	50121423	+	931.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	69174.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.42	1.76	2.85	6.03	5.32	11.92	5.65	14.94	12.78	18.08	18.09	6.27
Merged-chr1-134098611-3	chr1	134098515	134098715	+	931.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12627.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	12.52	7.29	13.12	21.72	6.55	7.84	12.29	15.98	8.85	6.53	14.07	13.78
Merged-chr13-37541870-3	chr13	37541794	37541994	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196549.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	25.84	21.38	10.27	8.04	19.23	20.07	15.61	15.98	34.22	23.1	35.68	16.6
Merged-chrX-89394284-1	chrX	89394184	89394384	+	931.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15405.0	NM_008821	18630.0	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	1.62	3.02	1.14	0.8	11.45	20.7	9.3	27.39	5.11	12.55	5.53	4.7
Merged-chr14-48138053-1	chr14	48137953	48138153	+	931.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	17184.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	6.06	3.77	9.13	16.09	13.09	5.33	8.3	15.0	0.0	1.51	0.0	1.25
Merged-chr10-60344321-3	chr10	60344223	60344423	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-2528.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	13.33	9.56	21.68	8.04	29.05	31.67	22.59	24.81	20.46	17.07	26.63	13.16
Merged-chr15-97580919-3	chr15	97580815	97581015	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124907.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	9.29	7.8	17.68	20.91	24.14	12.54	36.87	30.25	22.23	15.06	48.74	15.98
Merged-chr2-160026087-1	chr2	160025987	160026187	+	931.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040499, intron 2 of 3)	intron (NR_040499, intron 2 of 3)	9434.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	11.71	2.77	6.85	3.22	11.05	15.05	9.3	9.03	1.97	4.02	4.52	0.63
Merged-chr2-83812681-3	chr2	83812603	83812803	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175514)	promoter-TSS (NM_175514)	-25.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	18.17	23.64	29.66	21.32	19.23	15.05	22.59	21.36	10.82	26.11	18.09	9.08
Merged-chr6-106805066-3	chr6	106804949	106805149	+	931.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4962.0	NM_175357	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	11.31	12.32	4.56	12.07	15.14	17.87	5.65	15.17	18.88	35.15	22.61	16.29
Merged-chr5-34519578-3	chr5	34519463	34519663	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5584.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	19.79	19.37	29.66	30.97	25.77	21.64	18.27	40.96	26.95	9.54	23.62	15.98
Merged-chr1-171284512-3	chr1	171284410	171284610	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013919, intron 6 of 12)	intron (NM_013919, intron 6 of 12)	-3324.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	26.25	12.32	17.11	18.9	25.36	33.87	8.64	16.26	22.03	11.55	17.59	9.4
Merged-chr11-117119041-3	chr11	117118963	117119163	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	(GA)n|Simple_repeat|Simple_repeat	3891.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	21.0	9.31	14.83	16.89	16.77	19.76	10.3	15.25	19.08	15.06	11.56	10.96
Merged-chr10-41951359-3	chr10	41951249	41951449	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63910.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	10.9	10.06	18.25	26.95	15.96	20.07	14.95	20.47	18.1	6.03	25.63	17.86
Merged-chr3-84037095-3	chr3	84036950	84037150	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3111.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	10.9	19.62	38.79	28.56	18.82	22.26	4.32	20.55	22.82	10.54	25.12	13.78
Merged-chr17-34313559-3	chr17	34313452	34313652	+	931.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	7685.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	10.5	25.66	23.39	12.07	11.86	26.34	3.65	4.51	27.93	18.08	21.61	13.47
Merged-chr2-30062592-4	chr2	30062489	30062689	+	931.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	593.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	23.02	15.09	12.55	16.89	19.23	25.71	19.93	11.8	12.0	15.06	7.03	14.1
Merged-chr10-9722803-3	chr10	9722699	9722899	+	931.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38077.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	12.92	10.82	14.26	18.5	12.27	22.89	18.6	27.76	12.59	10.54	54.27	18.48
Merged-chr16-24202879-3	chr16	24202780	24202980	+	931.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120190.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	10.9	13.08	44.5	17.29	17.18	34.81	23.92	23.05	12.78	4.52	16.08	12.22
Merged-chr3-132116308-3	chr3	132116204	132116404	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	31012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	9.69	10.31	19.4	16.49	27.0	7.84	28.57	40.46	25.57	37.16	37.69	19.74
Merged-chr5-115319848-3	chr5	115319746	115319946	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131932, exon 2 of 2)	non-coding (NR_131932, exon 2 of 2)	-7331.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	15.34	10.31	14.83	7.64	23.32	28.22	14.62	21.31	23.21	26.11	31.15	6.58
Merged-chr11-51289703-3	chr11	51289589	51289789	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-231.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	12.92	17.1	10.27	22.52	12.27	18.81	14.62	16.96	11.21	18.58	21.1	11.28
Merged-chr7-28444155-3	chr7	28444039	28444239	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3202.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	5.25	15.34	13.69	5.63	13.91	16.93	5.31	9.93	18.88	17.07	21.61	13.16
Merged-chr3-146058430-3	chr3	146058345	146058545	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172864, intron 16 of 22)	intron (NM_172864, intron 16 of 22)	49591.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	14.54	11.57	13.69	16.09	15.96	16.62	14.95	18.84	16.92	12.55	13.57	15.04
Merged-chr1-85986981-3	chr1	85986901	85987101	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25946.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	12.92	12.32	30.8	17.7	12.68	16.62	4.98	6.2	29.11	31.13	36.68	26.31
Merged-chr11-20477700-3	chr11	20477603	20477803	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65550.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	16.56	13.83	12.55	8.85	49.91	37.0	28.23	42.59	49.17	77.83	75.37	45.74
Merged-chr17-64531350-3	chr17	64531276	64531476	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	24214.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	17.36	21.38	30.23	14.48	15.96	33.24	23.25	18.14	21.64	11.55	27.64	12.22
Merged-chr1-74715722-3	chr1	74715623	74715823	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024264, intron 1 of 8)	intron (NM_024264, intron 1 of 8)	2188.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	12.92	18.61	15.97	20.91	24.55	21.32	11.63	32.86	26.36	17.07	31.15	18.8
Merged-chr10-18965080-3	chr10	18964983	18965183	+	931.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46880.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	10.09	19.87	29.09	16.89	13.5	18.81	17.94	15.59	29.5	20.59	34.17	22.56
Merged-chr14-67876976-3	chr14	67876859	67877059	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-17214.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	17.77	16.6	20.54	16.09	15.55	23.83	30.89	26.89	17.7	9.54	17.08	7.21
Merged-chr2-165062216-3	chr2	165062136	165062336	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	6600.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	19.38	16.6	24.53	5.63	21.68	41.39	7.97	10.12	36.98	41.67	42.71	18.17
Merged-chr1-138458307-3	chr1	138458195	138458395	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161462.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	12.92	16.85	17.68	23.73	14.73	17.25	23.92	28.77	13.96	11.55	25.63	18.8
Merged-chr8-26980076-3	chr8	26980010	26980210	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	2774.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	16.96	11.82	13.12	14.88	14.73	12.86	16.28	22.71	34.03	13.56	24.12	16.29
Merged-chr15-13380175-1	chr15	13380075	13380275	+	931.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-206500.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.62	3.27	5.7	11.26	6.14	7.53	10.63	18.64	8.46	6.53	20.1	2.19
Merged-chr5-65120077-3	chr5	65119963	65120163	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347355, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	-11168.0	NM_001359401	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	14.54	10.31	19.4	16.49	9.82	19.13	18.93	13.88	16.92	12.05	22.11	15.04
Merged-chr11-120784212-3	chr11	120784108	120784308	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	-4.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	12.52	13.33	15.4	17.29	22.91	17.87	7.64	12.08	19.08	26.61	17.59	9.08
Merged-chr7-127208310-2	chr7	127208203	127208403	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347655)	promoter-TSS (NM_001347655)	165.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	22.21	17.61	17.11	13.27	13.5	18.5	8.97	12.56	18.49	25.11	24.12	12.84
Merged-chr11-5098298-3	chr11	5098177	5098377	+	931.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290491)	promoter-TSS (NM_001290491)	811.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	20.19	16.1	10.84	6.84	16.36	18.81	14.95	9.93	17.31	16.07	18.09	7.21
Merged-chr11-117338648-2	chr11	117338547	117338747	+	931.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6334.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	14.13	21.38	17.68	8.04	9.41	10.66	18.93	15.5	3.93	6.03	6.53	5.33
Merged-chrX-155194264-3	chrX	155194156	155194356	+	931.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22193.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	16.56	4.53	8.56	22.52	11.45	23.83	14.95	25.09	17.7	18.08	26.63	12.84
Merged-chr11-23846166-3	chr11	23846064	23846264	+	931.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49106.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	11.31	7.8	13.12	22.52	18.82	19.13	14.95	19.82	27.14	22.09	36.18	20.99
Merged-chr3-83842649-3	chr3	83842545	83842745	+	931.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1037.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	24.23	24.65	27.38	10.46	23.32	23.83	8.3	21.98	31.86	25.11	19.6	17.23
Merged-chr7-44869207-3	chr7	44869111	44869311	+	931.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133949, intron 1 of 11)	CpG	577.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	13.73	14.34	15.4	8.45	11.45	17.25	14.62	19.29	12.59	11.55	18.09	15.66
Merged-chr12-40273499-3	chr12	40273411	40273611	+	931.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50147.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	33.11	21.13	14.26	18.5	23.73	25.4	6.31	25.04	28.72	15.57	18.09	15.04
Merged-chr2-11503268-3	chr2	11503177	11503377	+	931.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	CpG	-1187.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	16.96	16.1	12.55	20.91	28.64	23.83	28.57	36.95	16.92	11.55	27.64	25.69
Merged-chr15-96743422-3	chr15	96743322	96743522	+	931.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43694.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	15.75	15.34	12.55	8.04	29.86	16.93	23.58	28.57	21.64	24.1	21.61	13.16
Merged-chr8-26978726-3	chr8	26978630	26978830	+	931.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1394.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	12.11	16.35	26.81	11.66	15.96	26.03	10.3	10.43	42.88	43.18	38.69	19.74
Merged-chr14-117714379-3	chr14	117714293	117714493	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	239454.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	10.09	14.84	12.55	16.49	15.14	24.46	12.62	40.15	21.64	23.6	46.23	22.87
Merged-chr3-9786794-3	chr3	9786694	9786894	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	46885.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	14.54	13.58	18.25	29.36	23.32	8.78	23.92	35.02	9.24	3.51	17.59	4.07
Merged-chr15-79039110-3	chr15	79039011	79039211	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013847)	TTS (NM_013847)	-2774.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	33.92	22.64	15.97	12.07	23.73	25.09	9.63	18.98	13.77	24.6	29.14	10.65
Merged-chr14-31385452-3	chr14	31385341	31385541	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32236.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	10.5	7.55	18.83	4.02	15.96	28.85	19.27	19.07	25.57	16.57	30.65	22.56
Merged-chr3-96001220-3	chr3	96001117	96001317	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013841, intron 14 of 14)	intron (NM_013841, intron 14 of 14)	-5378.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	16.56	10.06	11.41	6.84	27.41	18.81	11.29	17.3	16.72	21.09	16.58	9.71
Merged-chr12-4188395-3	chr12	4188296	4188496	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	45569.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	12.92	10.06	13.12	13.67	20.05	14.42	15.61	18.0	19.87	16.57	29.65	16.6
Merged-chr10-111107590-3	chr10	111107484	111107684	+	931.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-57218.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	28.27	12.07	18.25	24.13	24.96	23.83	15.94	26.1	21.83	11.05	32.66	20.36
Merged-chr17-34862678-3	chr17	34862573	34862773	+	931.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142706)	promoter-TSS (NM_001142706)	-159.0	NM_008198	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	15.34	21.38	7.42	5.23	8.18	33.87	8.64	3.5	26.16	44.19	27.13	8.14
Merged-chr14-25606818-3	chr14	25606720	25606920	+	931.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	CpG	3307.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	28.67	11.32	15.97	18.1	18.41	26.03	5.65	26.02	19.08	19.08	23.62	7.83
Merged-chr3-51553198-3	chr3	51553066	51553266	+	931.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080793, intron 1 of 7)	intron (NM_080793, intron 1 of 7)	-6591.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	10.5	17.36	23.39	18.9	20.86	9.72	4.32	17.3	13.57	14.06	15.07	12.84
Merged-chr8-72712775-3	chr8	72712674	72712874	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-10496.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	13.73	8.55	13.69	22.93	18.41	16.31	18.93	18.95	18.88	12.55	47.23	12.84
Merged-chr1-138244637-3	chr1	138244509	138244709	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29129.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	17.77	8.3	9.13	14.88	9.41	10.98	12.29	19.04	18.29	13.05	18.09	11.28
Merged-chr1-58652768-3	chr1	58652727	58652927	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045007, intron 1 of 1)	intron (NR_045007, intron 1 of 1)	186.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	4.04	13.58	14.83	5.63	11.05	11.92	13.95	7.57	12.39	11.55	13.57	10.65
Merged-chr4-33030484-3	chr4	33030383	33030583	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019586)	promoter-TSS (NM_019586)	840.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	18.57	13.58	24.53	23.33	15.14	13.48	15.28	16.82	18.69	10.54	19.6	8.46
Merged-chr19-5841673-5	chr19	5841556	5841756	+	931.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003513)	TTS (NR_003513)	3822.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	10.09	11.07	9.13	12.47	9.0	9.72	15.28	5.64	8.06	18.08	15.58	7.52
Merged-chr17-78382961-5	chr17	78382847	78383047	+	931.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 7 of 9)	intron (NM_001360407, intron 7 of 9)	35205.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	9.69	6.29	12.55	3.62	12.68	15.05	26.91	5.27	10.23	14.56	9.55	12.84
Merged-chr17-71479701-1	chr17	71479601	71479801	+	931.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4358.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.0	1.26	0.0	4.02	2.45	1.25	1.66	0.2	26.55	18.58	14.07	9.71
Merged-chr17-63374387-3	chr17	63374301	63374501	+	931.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 5 of 8)	MTA_Mm|LTR|ERVL-MaLR	-61428.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	15.75	14.84	19.97	6.44	11.86	19.13	9.97	8.78	25.57	19.08	13.06	3.76
Merged-chr6-32487571-3	chr6	32487471	32487671	+	931.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-23570.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	18.57	11.82	22.25	22.52	18.41	20.38	18.27	18.59	12.0	15.06	9.55	7.83
Merged-chr18-34378586-2	chr18	34378487	34378687	+	931.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5172.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	12.11	9.81	15.4	2.82	7.36	15.68	2.66	8.94	4.33	4.52	9.04	8.46
Merged-chr9-36931807-2	chr9	36931641	36931841	+	931.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 6 of 12)	intron (NM_001029838, intron 6 of 12)	98167.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	4.04	7.55	3.99	8.45	4.5	6.27	10.63	7.04	2.16	0.0	2.01	0.0
Merged-chr5-90364741-3	chr5	90364632	90364832	+	931.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	1453.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	12.11	17.86	7.99	19.71	19.23	32.93	11.29	16.79	40.32	24.6	44.72	25.69
Merged-chr9-44723109-3	chr9	44723017	44723217	+	931.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	12081.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	18.17	14.84	10.27	4.42	13.09	26.03	20.59	13.49	23.01	26.61	13.57	10.65
Merged-chr13-23519097-3	chr13	23519007	23519207	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11937.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	22.21	12.32	10.27	7.64	15.55	13.48	2.99	8.41	17.11	16.57	7.54	5.95
Merged-chr5-135616254-3	chr5	135616153	135616353	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16401.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	19.79	8.55	13.69	9.25	16.36	24.46	11.96	21.25	20.65	14.06	19.6	17.86
Merged-chr2-6455300-3	chr2	6455188	6455388	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102552.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	15.75	7.55	18.25	17.7	17.18	17.25	12.29	22.96	21.05	8.03	24.62	20.68
Merged-chr9-106453714-3	chr9	106453653	106453853	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021567)	promoter-TSS (NM_021567)	-85.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	7.67	7.29	5.7	6.84	10.64	4.39	6.98	8.41	15.34	15.57	16.58	8.14
Merged-chr10-41963000-3	chr10	41962885	41963085	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	55397.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	15.34	12.32	20.54	8.85	5.32	8.15	8.64	8.5	18.88	6.53	20.6	7.52
Merged-chr1-97337103-3	chr1	97337028	97337228	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-208825.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	6.86	8.05	11.98	20.11	47.05	29.79	42.52	49.26	25.37	36.65	29.14	24.75
Merged-chr11-59392509-2	chr11	59392409	59392609	+	931.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16856.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	6.46	4.28	8.56	12.47	29.05	27.28	27.24	35.07	47.8	10.54	30.65	28.82
Merged-chr11-62559144-3	chr11	62559034	62559234	+	931.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7403.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	14.13	24.65	12.55	14.08	39.68	13.8	38.86	47.72	21.83	11.55	10.05	13.47
Merged-chr5-139668666-3	chr5	139668517	139668717	+	931.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67716.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	10.09	7.04	6.85	10.86	7.77	8.15	2.66	8.33	16.92	20.08	21.61	10.34
Merged-chrX-74426440-3	chrX	74426400	74426600	+	931.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161421, intron 1 of 10)	intron (NM_001161421, intron 1 of 10)	1888.0	NM_001136067	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	5.25	7.29	13.69	15.69	12.27	17.25	11.29	12.42	10.62	13.05	21.1	14.1
Merged-chr10-122753607-1	chr10	122753507	122753707	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74292.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	4.04	3.77	22.82	10.86	4.5	7.53	12.62	12.53	3.54	4.02	14.57	9.71
Merged-chr9-78176657-3	chr9	78176569	78176769	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040401, exon 2 of 4)	non-coding (NR_040401, exon 2 of 4)	755.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	4.04	11.82	6.85	15.28	9.82	8.47	8.64	13.32	35.21	28.62	36.18	16.29
Merged-chr10-7681618-4	chr10	7681582	7681782	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	473.0	NM_010690	16798.0	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	7.27	17.86	6.28	12.87	11.45	25.4	15.61	15.67	24.78	24.1	34.17	18.48
Merged-chr2-3622415-2	chr2	3622310	3622510	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-91048.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.27	8.55	3.42	6.03	19.64	13.48	6.31	8.8	15.54	27.62	16.08	7.21
Merged-chr18-54993071-1	chr18	54992971	54993171	+	931.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-480.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.02	3.02	3.42	4.83	1.64	4.39	3.32	3.76	8.85	5.52	14.07	5.01
Merged-chr17-47522659-1	chr17	47522559	47522759	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	17608.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.81	3.02	10.27	2.82	5.73	4.7	6.98	8.44	6.1	3.01	4.02	4.07
Merged-chr8-116263560-1	chr8	116263460	116263660	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-241455.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.83	1.51	4.56	3.22	1.23	3.14	7.64	9.98	1.97	0.5	2.01	3.13
Merged-chr4-149858771-1	chr4	149858671	149858871	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84504.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	2.01	2.28	0.0	12.68	1.88	10.3	7.65	4.72	4.52	14.07	2.19
Merged-chr7-4510035-3	chr7	4509922	4510122	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011618, exon 8 of 14)	exon (NM_011618, exon 8 of 14)	5953.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	16.96	15.09	14.26	12.47	16.77	31.04	10.63	17.52	20.26	23.1	47.74	8.46
Merged-chr3-37771154-2	chr3	37771037	37771237	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-46777.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	12.92	4.02	5.7	9.25	15.55	11.92	1.66	2.58	4.13	10.04	29.65	14.41
Merged-chr16-36718676-3	chr16	36718591	36718791	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	24713.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	14.13	8.3	22.25	12.07	22.09	24.46	13.95	20.47	14.16	10.54	20.1	14.41
Merged-chr14-54426344-3	chr14	54426236	54426436	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-573.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	19.79	18.86	13.12	16.49	17.59	24.46	8.97	13.35	43.66	31.63	32.16	13.47
Merged-chr2-31114417-3	chr2	31114330	31114530	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-17930.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	16.15	12.32	6.85	12.07	18.82	22.26	8.3	9.5	21.83	20.08	20.1	10.96
Merged-chr9-83728672-1	chr9	83728572	83728772	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37197.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	3.63	4.78	7.99	4.02	4.91	8.47	3.65	12.7	7.28	5.52	8.54	11.28
Merged-chr16-73473763-2	chr16	73473664	73473864	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	810615.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	5.25	1.51	0.0	6.03	26.59	24.77	37.87	82.63	13.77	9.54	37.18	12.53
Merged-chr6-8778115-1	chr6	8778015	8778215	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010492, exon 1 of 14)	5' UTR (NM_010492, exon 1 of 14)	369.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	1.62	0.0	0.0	0.0	2.45	9.41	10.96	10.74	1.18	4.52	3.01	0.63
Merged-chr4-9647468-3	chr4	9647378	9647578	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-3761.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	10.09	5.79	28.52	15.28	17.18	18.5	16.28	18.28	35.4	36.65	30.65	25.06
Merged-chr7-83566214-3	chr7	83566092	83566292	+	930.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18739.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	12.52	5.53	17.11	17.7	8.59	6.59	15.28	21.87	15.14	13.05	27.13	20.68
Merged-chr15-94557635-3	chr15	94557553	94557753	+	930.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 6 of 11)	intron (NM_029926, intron 6 of 11)	13993.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	14.54	21.63	11.41	16.89	19.23	23.52	13.62	22.65	27.73	31.13	40.7	19.42
Merged-chr13-23430915-3	chr13	23430818	23431018	+	930.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	99.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	10.09	15.09	14.83	20.91	13.5	25.71	15.94	13.65	18.1	19.08	23.62	19.74
Merged-chr2-70990374-3	chr2	70990272	70990472	+	930.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28002.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	17.77	9.81	32.52	35.8	19.23	19.44	17.94	30.93	30.29	11.55	31.66	26.94
Merged-chr19-37963386-5	chr19	37963204	37963404	+	930.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 19 of 53)	PB1D10|SINE|Alu	80273.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.85	4.28	3.42	6.84	6.14	6.59	3.32	4.71	6.49	5.02	5.53	5.64
Merged-chr4-134632456-3	chr4	134632349	134632549	+	930.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-64598.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	25.44	16.6	35.94	23.73	32.32	22.26	23.25	42.2	15.14	11.55	14.07	17.86
Merged-chr3-146658482-3	chr3	146658381	146658581	+	930.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7164.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	12.52	10.56	10.84	14.88	24.55	12.86	11.96	32.36	25.77	21.09	32.16	20.05
Merged-chr10-93180116-3	chr10	93180019	93180219	+	930.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	MTB_Mm|LTR|ERVL-MaLR	17334.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	14.54	12.58	32.52	26.55	16.36	19.76	35.21	35.61	12.19	10.54	14.07	11.59
Merged-chr7-19024886-2	chr7	19024770	19024970	+	930.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	493.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	8.88	10.56	3.42	6.44	9.0	14.74	3.32	9.0	14.36	18.58	11.56	12.53
Merged-chr14-27412895-3	chr14	27412794	27412994	+	930.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-15940.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	11.71	7.55	14.83	26.55	17.18	13.48	11.96	39.2	37.17	30.13	35.17	28.51
Merged-chr11-8664174-8	chr11	8664015	8664215	+	930.8541869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	CpG	420.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.08	8.3	13.12	14.48	13.5	13.8	11.63	17.52	22.23	15.57	27.64	22.24
Merged-chr12-117378654-2	chr12	117378581	117378781	+	930.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41669.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	17.77	28.17	28.52	25.34	7.36	9.09	9.97	11.72	0.2	1.0	3.01	0.63
Merged-chr7-139220515-2	chr7	139220399	139220599	+	930.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-7192.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	2.42	6.29	2.28	2.82	5.73	10.35	5.31	10.21	21.44	16.07	45.22	23.81
Merged-chr8-116974413-3	chr8	116974365	116974565	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	4188.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	14.54	13.08	16.54	19.71	8.59	14.42	16.28	11.24	5.31	7.53	19.6	10.65
Merged-chr14-13994047-1	chr14	13993947	13994147	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18444.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	18.17	11.07	26.24	19.31	0.82	0.0	2.33	0.0	1.57	2.51	2.01	3.13
Merged-chr18-69586701-3	chr18	69586583	69586783	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240523.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	11.71	11.57	16.54	35.8	20.05	9.41	18.27	15.31	14.95	17.57	23.11	14.72
Merged-chr2-84890080-3	chr2	84889955	84890155	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3363.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	9.69	17.61	9.13	13.27	13.91	18.5	11.96	18.45	15.54	7.53	16.08	15.98
Merged-chr14-55822671-3	chr14	55822581	55822781	+	930.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2114.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	30.69	18.61	11.41	14.48	13.5	24.15	9.97	18.31	19.67	12.05	16.08	15.98
Merged-chr19-53529763-3	chr19	53529650	53529850	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085390, intron 1 of 3)	intron (NM_001085390, intron 1 of 3)	432.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	13.73	16.35	21.11	10.86	22.91	25.4	20.93	22.91	12.39	15.06	14.57	10.34
Merged-chr14-68672025-3	chr14	68671910	68672110	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16168.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	9.69	15.59	21.68	12.07	26.59	49.54	30.23	20.83	28.52	28.62	22.11	7.83
Merged-chr19-11293140-3	chr19	11293041	11293241	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 2 of 2)	intron (NR_045317, intron 2 of 2)	-9328.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	13.73	24.9	9.7	16.49	20.46	22.58	4.98	9.25	16.33	14.06	14.07	6.27
Merged-chr7-64061351-3	chr7	64061260	64061460	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92475.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	25.04	15.85	7.42	6.84	22.5	27.91	10.96	15.64	24.59	17.57	10.55	8.77
Merged-chr13-37873665-3	chr13	37873493	37873693	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-14841.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.04	12.83	13.69	10.46	16.36	14.42	10.3	15.34	15.93	15.06	11.05	5.95
Merged-chr2-91272987-3	chr2	91272876	91273076	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001311144)	TTS (NM_001311144)	7861.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	10.5	11.82	13.69	21.72	20.86	27.59	8.64	21.48	41.11	24.6	40.2	24.43
Merged-chr11-71159661-3	chr11	71159558	71159758	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040696, intron 12 of 14)	CT-rich|Low_complexity|Low_complexity	-14954.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	22.61	24.9	14.26	31.77	31.09	22.58	12.29	15.31	25.57	20.08	13.06	16.29
Merged-chr7-121075951-3	chr7	121075839	121076039	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	-1409.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.44	9.56	11.98	8.45	13.91	19.44	15.61	13.12	21.44	16.07	25.12	8.46
Merged-chr13-22026634-3	chr13	22026579	22026779	+	930.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8964.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	27.46	34.96	10.27	16.49	19.23	23.52	12.95	6.28	14.16	10.04	4.02	2.51
Merged-chr7-135773983-3	chr7	135773891	135774091	+	930.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57612.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	13.33	9.31	17.68	3.22	11.86	21.32	14.62	19.65	17.11	21.59	10.55	6.58
Merged-chr4-105268909-3	chr4	105268811	105269011	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111564.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	12.11	13.33	6.28	0.8	18.41	24.15	9.3	3.39	24.39	19.58	4.02	3.45
Merged-chr16-90396391-3	chr16	90396298	90396498	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	10001.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	11.71	8.3	16.54	12.07	28.64	21.64	15.94	19.35	13.18	9.54	18.59	3.45
Merged-chr8-106958381-3	chr8	106958288	106958488	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	L1ME2|LINE|L1	22638.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	13.73	19.37	12.55	10.05	24.14	41.71	31.56	32.3	23.01	32.64	31.66	16.6
Merged-chr1-182520246-1	chr1	182520146	182520346	+	930.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2636.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	8.88	3.52	7.99	2.82	10.64	6.9	6.31	11.13	3.74	4.52	6.53	1.88
Merged-chr19-11107953-3	chr19	11107855	11108055	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 4 of 6)	intron (NM_027058, intron 4 of 6)	22923.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	27.86	15.09	35.94	29.76	22.09	19.13	24.58	25.68	13.77	6.53	10.05	7.21
Merged-chr3-96246679-1	chr3	96246579	96246779	+	930.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178216).2	promoter-TSS (NM_178216).2	-6.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	0.81	2.52	1.14	0.8	2.05	1.57	1.66	0.06	21.05	21.09	24.62	9.08
Merged-chr6-73059931-3	chr6	73059819	73060019	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164669, intron 61 of 76)	MTEa|LTR|ERVL-MaLR	-101171.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	6.06	11.32	15.4	6.84	14.32	8.47	4.98	12.59	18.49	16.07	26.63	15.04
Merged-chr16-91375134-3	chr16	91375032	91375232	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	2349.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	21.8	9.56	23.39	10.86	15.14	31.98	12.95	22.91	5.51	9.54	20.1	11.9
Merged-chr7-34272670-1	chr7	34272570	34272770	+	930.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	12939.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	7.67	4.53	10.84	1.61	10.64	6.27	6.64	13.23	3.54	7.03	6.53	3.13
Merged-chr3-146158529-3	chr3	146158440	146158640	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	B4|SINE|B4	8366.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	4.44	10.82	10.84	5.63	5.73	12.23	6.31	9.48	14.36	13.56	8.54	16.92
Merged-chr16-95821185-3	chr16	95821093	95821293	+	930.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77520.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	8.08	10.31	17.68	24.13	15.14	11.92	10.63	20.5	23.21	9.04	17.59	13.78
Merged-chr6-51636364-3	chr6	51636268	51636468	+	930.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91075.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	20.59	9.06	35.37	33.78	23.32	13.48	27.57	27.67	19.47	14.56	23.62	16.6
Merged-chr10-79928277-3	chr10	79928156	79928356	+	930.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	915.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	12.11	11.07	22.82	14.08	25.36	14.42	8.97	11.38	25.37	37.16	22.11	18.17
Merged-chr17-34033271-5	chr17	34033198	34033398	+	930.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	948.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	15.75	7.04	3.99	6.44	9.82	9.41	5.98	4.82	10.03	8.54	7.54	9.4
Merged-chr11-120624888-3	chr11	120624783	120624983	+	930.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-7.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	19.38	20.63	15.4	16.49	15.96	12.54	19.93	11.52	17.9	11.55	11.05	10.34
Merged-chr16-4213240-3	chr16	4213126	4213326	+	930.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001025432, exon 1 of 31)	5' UTR (NM_001025432, exon 1 of 31)	178.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	8.88	11.57	4.56	9.25	7.36	8.15	9.63	8.07	12.0	11.05	15.07	9.71
Merged-chr1-165192392-3	chr1	165192313	165192513	+	930.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	2020.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	31.9	19.62	20.54	11.66	19.64	36.06	13.29	10.43	29.7	33.14	29.65	11.9
Merged-chr16-30597285-3	chr16	30597192	30597392	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2431.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	10.09	14.59	10.27	6.44	11.86	17.25	11.29	8.97	13.77	24.1	11.56	9.4
Merged-chr11-21238805-3	chr11	21238681	21238881	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139061)	promoter-TSS (NM_139061)	-251.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	7.67	15.59	5.7	11.26	13.09	14.74	18.6	12.17	18.29	12.55	15.07	11.59
Merged-chr13-12473912-3	chr13	12473808	12474008	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-12170.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	16.96	16.35	26.81	16.89	11.05	10.03	17.61	22.23	28.91	28.12	21.61	10.02
Merged-chr10-19958368-3	chr10	19958267	19958467	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	23841.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	12.92	11.57	11.98	7.24	31.5	31.04	13.62	12.53	12.0	7.03	12.06	3.45
Merged-chr18-60891400-3	chr18	60891314	60891514	+	930.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20826.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	21.0	18.11	10.84	23.33	22.91	21.01	14.95	23.83	12.78	15.06	32.16	15.35
Merged-chr2-29889113-2	chr2	29888989	29889189	+	930.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	75.0	NM_001355137	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	14.94	7.8	15.4	3.22	11.05	13.17	5.65	6.03	15.93	9.04	6.03	14.41
Merged-chr11-117083635-3	chr11	117083548	117083748	+	930.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6300.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	9.29	8.05	7.99	10.05	11.45	13.48	12.29	18.42	15.74	14.56	17.59	17.54
Merged-chr17-12252344-2	chr17	12252234	12252434	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	66326.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.5	0.0	0.8	13.5	11.29	11.29	7.21	24.98	25.11	34.67	16.29
Merged-chr12-98735551-1	chr12	98735451	98735651	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-906.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	2.42	5.03	9.7	9.25	8.18	4.7	10.63	12.14	2.56	6.03	10.55	5.01
Merged-chr2-132151152-2	chr2	132151046	132151246	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5826.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.25	6.04	15.4	2.82	6.95	20.7	6.98	9.5	20.65	11.05	15.07	16.29
Merged-chr10-127609722-1	chr10	127609622	127609822	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	11426.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.81	7.04	6.28	6.44	10.23	14.74	10.63	13.12	3.34	3.01	5.53	3.45
Merged-chr6-57534975-3	chr6	57534894	57535094	+	930.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	432.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	8.48	11.57	5.13	11.26	12.68	8.78	14.95	7.37	11.8	17.07	19.09	15.35
Merged-chr10-26762681-3	chr10	26762562	26762762	+	930.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9850.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	10.5	17.61	6.28	11.26	27.82	27.28	15.28	26.69	18.69	27.11	20.1	7.21
Merged-chr13-100832332-3	chr13	100832245	100832445	+	930.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	1082.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	17.36	10.82	16.54	8.85	20.86	19.13	11.96	25.54	22.82	27.11	24.12	15.66
Merged-chr2-92066869-3	chr2	92066783	92066983	+	930.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42713.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	14.54	18.61	15.4	7.24	25.36	55.5	19.27	5.41	30.88	34.14	5.53	6.58
Merged-chr1-85988523-3	chr1	85988413	85988613	+	930.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27458.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	14.94	10.56	10.84	10.05	52.77	52.68	43.51	32.22	64.51	89.37	99.99	55.45
Merged-chr3-65518013-3	chr3	65517929	65518129	+	930.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-10418.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	12.92	14.09	15.97	14.88	11.86	20.7	11.29	15.64	15.54	17.07	17.59	6.89
Merged-chr11-120631345-3	chr11	120631252	120631452	+	930.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2195.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	14.94	15.59	10.84	10.86	24.14	21.95	14.62	16.49	19.47	23.6	14.07	7.52
Merged-chr2-76370167-4	chr2	76370097	76370297	+	930.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153405, exon 1 of 10)	exon (NM_153405, exon 1 of 10)	213.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	14.54	5.79	2.85	12.07	15.14	12.54	11.63	13.4	19.28	29.12	18.59	14.1
Merged-chr12-8659937-3	chr12	8659844	8660044	+	930.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-14190.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	10.9	5.03	18.25	22.93	31.5	11.92	19.6	24.73	19.28	20.08	35.68	14.72
Merged-chr14-74703999-3	chr14	74703875	74704075	+	930.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-28322.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	17.77	21.88	25.67	28.96	7.36	14.11	14.95	21.14	10.62	22.59	29.65	12.53
Merged-chr1-184732074-4	chr1	184731916	184732116	+	930.34375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008250, exon 1 of 4)	exon (NM_008250, exon 1 of 4)	477.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	2.83	9.31	13.69	19.71	10.64	12.54	9.63	8.69	14.36	15.06	24.12	10.34
Merged-chr16-22517763-3	chr16	22517646	22517846	+	930.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_130988)	TTS (NR_130988)	6266.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	11.71	15.09	17.11	21.32	8.59	16.93	13.29	17.58	15.54	12.05	14.07	11.59
Merged-chr9-95682024-2	chr9	95681941	95682141	+	930.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 5 of 8)	MTB_Mm|LTR|ERVL-MaLR	44413.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.04	3.52	2.28	5.23	14.32	7.21	6.31	8.05	22.42	11.05	23.62	11.28
Merged-chr13-52581051-1	chr13	52580951	52581151	+	930.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2386.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.67	6.79	3.42	3.22	11.05	12.23	10.96	7.91	9.05	7.53	9.55	3.13
Merged-chr2-30679170-3	chr2	30679058	30679258	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	16.96	15.59	22.82	20.91	18.41	28.22	15.28	21.14	18.69	15.06	22.61	8.77
Merged-chr4-133205041-3	chr4	133204915	133205115	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7521.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	30.28	10.31	22.82	20.91	19.23	22.89	10.3	14.66	14.95	7.53	20.1	6.89
Merged-chr5-24686372-3	chr5	24686284	24686484	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	569.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	11.71	13.33	19.97	10.86	25.77	26.34	16.94	22.4	43.86	29.12	29.65	27.57
Merged-chr16-31759557-3	chr16	31759451	31759651	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	5201.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	16.56	24.15	18.25	16.49	11.45	20.07	6.64	15.08	22.42	16.57	20.1	15.98
Merged-chr10-34235579-3	chr10	34235440	34235640	+	930.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27989.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	13.73	6.04	14.83	35.39	19.23	18.5	4.98	23.19	12.19	20.59	24.62	10.96
Merged-chr16-77128881-3	chr16	77128793	77128993	+	930.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114824.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	15.34	9.81	13.69	17.29	12.27	9.41	13.62	16.71	17.9	4.52	18.59	5.64
Merged-chr2-124703565-3	chr2	124703470	124703670	+	930.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	49989.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	10.5	12.32	27.95	15.69	12.68	31.04	20.59	12.76	42.68	20.08	48.24	21.93
Merged-chr13-9182041-3	chr13	9181954	9182154	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	14.54	7.29	8.56	7.24	14.32	22.58	9.3	13.96	25.96	25.11	26.63	15.04
Merged-chr17-72834738-3	chr17	72834634	72834834	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1894.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	13.33	7.8	14.26	15.28	31.5	14.74	20.59	29.69	27.34	21.59	18.59	19.74
Merged-chr17-7897961-3	chr17	7897875	7898075	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	11.31	11.32	14.26	14.08	17.18	16.62	10.3	17.3	22.42	22.09	16.08	15.66
Merged-chr3-65943503-3	chr3	65943416	65943616	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	14733.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	18.57	10.82	7.99	14.88	19.64	21.32	9.97	17.24	19.87	21.09	13.57	5.33
Merged-chr15-89175618-3	chr15	89175528	89175728	+	930.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-1677.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	35.13	38.48	34.8	14.08	39.68	54.56	23.58	17.97	45.63	56.74	31.66	10.65
Merged-chr11-35178714-1	chr11	35178614	35178814	+	930.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 3 of 35)	intron (NM_011412, intron 3 of 35)	57258.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.81	0.0	0.0	0.0	0.82	0.0	0.0	0.31	7.28	13.56	6.53	9.4
Merged-chr4-45489841-2	chr4	45489733	45489933	+	930.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	40995.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.46	4.53	5.13	5.23	6.14	5.96	9.97	13.04	17.7	25.11	21.1	15.66
Merged-chr15-36708585-3	chr15	36708491	36708691	+	930.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82341.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	16.15	10.06	6.85	11.66	18.0	22.26	13.95	17.75	11.8	20.08	25.63	14.41
Merged-chr10-93090430-2	chr10	93090343	93090543	+	930.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8847.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	7.27	3.02	12.55	7.64	13.09	6.27	10.96	9.45	17.9	18.08	16.58	13.78
Merged-chr12-35336517-1	chr12	35336417	35336617	+	930.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-141620.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	8.08	1.01	9.7	6.44	19.23	12.86	15.61	25.68	10.62	6.53	9.04	3.45
Merged-chr7-116625597-3	chr7	116625471	116625671	+	930.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	121202.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	10.5	5.53	16.54	15.28	13.5	28.54	23.92	32.55	17.11	11.55	17.59	14.1
Merged-chr17-37050635-3	chr17	37050546	37050746	+	930.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019439, intron 5 of 22)	CpG	4680.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	24.63	21.88	11.41	29.36	10.64	9.72	11.63	12.28	8.85	14.06	11.05	5.01
Merged-chr11-60538876-4	chr11	60538704	60538904	+	930.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172943, exon 1 of 4)	exon (NM_172943, exon 1 of 4)	1121.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	10.5	26.91	7.99	3.22	5.73	14.42	12.29	7.23	24.39	17.07	16.08	20.68
Merged-chr5-135106871-3	chr5	135106802	135107002	+	930.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152880)	promoter-TSS (NR_152880)	11.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	20.19	15.09	7.42	12.07	11.86	15.05	9.3	14.94	25.77	11.55	18.09	15.35
Merged-chr5-31451473-3	chr5	31451371	31451571	+	930.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	-965.0	NM_172993	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	10.09	13.83	11.98	12.47	22.91	12.54	12.29	19.21	22.62	25.61	24.62	11.59
Merged-chr10-88390275-3	chr10	88390169	88390369	+	930.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	MLTR32C_MM|LTR|ERVK	10857.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	8.08	14.59	16.54	9.65	6.55	10.35	11.63	21.7	15.14	7.53	14.57	17.23
Merged-chr19-11263730-3	chr19	11263625	11263825	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2426.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	8.48	10.56	17.68	18.1	20.46	13.17	12.95	12.48	15.54	17.57	11.56	10.96
Merged-chr3-15590894-3	chr3	15590794	15590994	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15829.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	25.44	20.63	31.95	18.1	23.32	34.81	25.91	24.56	17.31	10.54	9.04	4.7
Merged-chr11-61794976-3	chr11	61794895	61795095	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-32907.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	18.17	9.31	17.11	18.1	18.82	13.17	20.26	29.89	14.95	13.05	20.1	13.47
Merged-chr8-69189089-3	chr8	69188976	69189176	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19970.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	10.9	10.06	11.41	10.46	15.55	18.81	11.63	14.94	23.41	17.57	30.65	17.54
Merged-chr1-53848783-3	chr1	53848694	53848894	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106149)	promoter-TSS (NR_106149)	-630.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	32.71	17.61	34.8	38.21	29.05	27.28	33.22	36.7	21.44	13.56	21.61	9.08
Merged-chr10-67490034-3	chr10	67489921	67490121	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47848.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	11.31	13.08	7.42	21.72	13.91	19.44	13.29	29.55	21.83	17.57	27.64	18.8
Merged-chr5-139382044-2	chr5	139381925	139382125	+	930.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	1386.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.44	2.01	16.54	19.71	8.59	10.35	18.6	17.22	7.47	3.51	12.06	11.28
Merged-chr6-4054626-2	chr6	4054523	4054723	+	930.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7039.0	NR_131108	78034.0	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	Gm43986	RIKEN cDNA 4930528H21 gene	ncRNA	4.85	5.03	2.85	6.44	10.23	10.35	4.65	17.55	13.37	17.57	14.57	16.29
Merged-chr9-116241522-2	chr9	116241419	116241619	+	930.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52339.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	7.27	13.08	19.97	24.94	9.41	9.41	11.63	16.32	6.49	2.51	2.01	0.94
Merged-chr15-57995847-3	chr15	57995797	57995997	+	930.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173862, intron 3 of 3)	B4A|SINE|B4	9994.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	6.86	13.33	10.27	10.05	13.5	16.31	13.29	16.21	14.95	14.06	14.57	15.35
Merged-chr11-22928969-3	chr11	22928833	22929033	+	930.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361661, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-43072.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	6.86	15.59	21.68	14.48	9.41	10.35	21.92	21.95	10.42	9.54	18.59	13.16
Merged-chr4-150110540-3	chr4	150110448	150110648	+	930.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-8796.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	11.31	17.61	31.95	30.16	11.05	16.93	9.3	15.64	48.39	54.73	50.75	29.13
Merged-chr5-3928269-5	chr5	3928110	3928310	+	930.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194462)	promoter-TSS (NM_194462)	24.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	9.29	14.84	6.85	8.45	20.86	17.56	23.25	23.22	14.55	16.57	18.59	10.34
Merged-chr13-37338026-3	chr13	37337906	37338106	+	930.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7339.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.44	17.61	23.39	13.27	13.5	18.5	14.95	14.52	19.87	15.06	20.1	15.04
Merged-chr1-95647060-3	chr1	95646954	95647154	+	930.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	20540.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	16.96	11.82	23.96	17.7	12.27	19.44	10.3	26.64	32.45	15.57	24.62	17.54
Merged-chr3-27193619-1	chr3	27193519	27193719	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	B1F|SINE|Alu	10615.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.06	2.26	3.42	5.63	10.64	14.11	5.98	6.53	11.41	8.54	4.02	7.21
Merged-chr7-30562681-1	chr7	30562581	30562781	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	503.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	7.67	4.28	6.28	6.44	6.14	7.21	5.31	8.83	7.47	12.55	12.06	10.02
Merged-chr4-45436889-1	chr4	45436789	45436989	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-28123.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.65	10.56	4.56	2.82	5.32	3.45	6.31	11.19	4.13	1.51	8.54	2.82
Merged-chr10-15171354-1	chr10	15171254	15171454	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	411065.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	2.83	1.76	2.28	8.45	22.09	8.78	13.62	24.87	1.38	0.0	4.52	0.0
Merged-chr5-129995235-1	chr5	129995135	129995335	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357025, intron 8 of 10)	intron (NM_001357025, intron 8 of 10)	7814.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	8.88	6.29	6.28	6.44	4.09	10.35	13.95	31.23	5.31	5.52	1.0	5.95
Merged-chr16-78560293-3	chr16	78560200	78560400	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040569)	promoter-TSS (NR_040569)	-16.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	12.52	8.3	15.97	12.07	16.77	14.11	8.64	18.87	28.52	20.59	28.64	17.86
Merged-chr19-5117637-3	chr19	5117510	5117710	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045528, intron 1 of 15)	CpG	798.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	8.88	7.29	4.56	5.23	9.41	21.64	5.31	7.51	17.9	11.05	14.57	8.77
Merged-chr2-28547972-3	chr2	28547878	28548078	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145836, intron 11 of 17)	intron (NM_001145836, intron 11 of 17)	14514.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	12.11	21.38	10.84	10.86	20.86	17.25	4.65	14.07	21.05	18.08	27.13	11.59
Merged-chr12-81675759-1	chr12	81675659	81675859	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	44510.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	3.23	3.27	1.14	1.61	12.68	7.53	3.65	11.33	6.29	8.03	3.01	8.46
Merged-chr17-86671408-1	chr17	86671308	86671508	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82456.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.83	3.52	2.85	3.22	4.5	3.76	5.65	7.37	0.98	2.01	4.02	3.76
Merged-chr13-76129011-1	chr13	76128911	76129111	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081352, intron 17 of 43)	intron (NM_001081352, intron 17 of 43)	30277.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	4.44	1.26	2.28	10.46	7.36	4.39	3.99	9.59	0.0	3.01	3.01	0.31
Merged-chr18-61093896-3	chr18	61093800	61094000	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11672.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	18.98	8.05	15.4	15.28	17.59	45.15	21.26	24.28	31.27	38.16	42.21	12.22
Merged-chr17-37542493-1	chr17	37542393	37542593	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	12536.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	2.42	7.8	4.56	6.84	2.86	10.03	2.33	9.2	2.95	3.01	5.02	3.76
Merged-chr1-135399660-3	chr1	135399564	135399764	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-24601.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	18.57	9.81	27.38	18.9	10.64	10.03	13.62	18.9	14.16	15.57	14.07	4.39
Merged-chr4-16102238-3	chr4	16102144	16102344	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61399.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	11.31	9.06	12.55	10.86	21.68	28.85	43.85	61.68	26.16	17.07	23.11	20.05
Merged-chr10-84390503-3	chr10	84390417	84390617	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49954.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	16.96	21.63	19.4	8.85	21.27	16.31	15.61	9.08	18.69	15.57	17.08	5.64
Merged-chr10-19526523-3	chr10	19526424	19526624	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31881.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	14.13	12.83	19.97	19.31	24.55	34.81	39.53	39.42	20.26	15.57	24.62	10.96
Merged-chr8-71596087-3	chr8	71595984	71596184	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025396, exon 5 of 5)	exon (NM_025396, exon 5 of 5)	-1562.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	27.05	20.63	25.1	9.25	30.27	32.93	6.98	25.35	30.49	20.08	35.68	14.72
Merged-chr18-75839531-3	chr18	75839470	75839670	+	929.944458	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	19392.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.4	2.77	2.85	6.84	4.09	8.15	6.98	7.49	22.62	17.07	32.66	31.33
Merged-chr10-80963828-3	chr10	80963720	80963920	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33729.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	14.54	13.08	16.54	10.86	16.77	22.89	12.62	21.36	22.23	20.59	16.58	15.66
Merged-chr11-116869858-3	chr11	116869777	116869977	+	929.92218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15877.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	14.94	12.07	7.99	15.28	13.5	17.87	9.97	31.15	11.41	23.6	15.58	14.72
Merged-chr11-74485644-2	chr11	74485549	74485749	+	929.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	104509.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	30.28	18.86	19.4	10.86	8.18	6.27	0.33	1.09	16.13	8.54	17.08	4.39
Merged-chr6-116265796-3	chr6	116265687	116265887	+	929.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-745.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	23.42	9.56	12.55	4.42	34.77	22.58	13.95	18.2	27.34	23.6	29.65	17.23
Merged-chr10-61122511-3	chr10	61122394	61122594	+	929.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25190.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	6.46	15.34	16.54	15.28	28.64	20.07	18.6	22.43	11.41	26.61	13.06	13.47
Merged-chr18-75599943-3	chr18	75599845	75600045	+	929.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 6 of 11)	RMER1C|Other|Other	85300.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	11.31	27.92	6.85	4.02	12.27	14.74	10.3	18.53	32.26	34.14	28.64	21.93
Merged-chr15-103182350-3	chr15	103182244	103182444	+	929.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19060.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	16.96	14.34	10.84	9.25	12.68	10.66	6.64	8.3	21.05	18.58	21.1	14.41
Merged-chr1-93305841-3	chr1	93305739	93305939	+	929.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178051)	promoter-TSS (NM_178051)	40.0	NM_001310756	69821.0	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	16.15	13.83	13.69	13.27	18.82	10.03	17.94	18.17	16.72	14.56	18.09	8.14
Merged-chr4-150508883-2	chr4	150508769	150508969	+	929.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085492, exon 9 of 23)	exon (NM_001085492, exon 9 of 23)	143305.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	17.36	5.28	17.11	6.84	12.68	15.37	7.97	16.07	17.7	13.56	14.07	6.89
Merged-chr13-90932900-2	chr13	90932810	90933010	+	929.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9788.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	12.11	4.53	1.14	14.08	12.68	4.08	15.61	14.55	0.0	0.0	0.0	1.57
Merged-chr11-19027361-2	chr11	19027252	19027452	+	929.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-8383.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	9.29	12.32	8.56	13.27	18.41	14.74	17.61	13.49	7.47	8.54	9.55	7.21
Merged-chr15-59156468-1	chr15	59156368	59156568	+	929.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-74442.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.04	3.52	6.28	7.24	17.18	9.41	21.26	16.96	4.92	7.03	9.55	17.86
Merged-chr6-28867759-3	chr6	28867650	28867850	+	929.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-36003.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	18.98	15.59	15.97	11.26	13.5	27.91	18.93	10.04	22.82	23.1	24.12	10.65
Merged-chr17-43230044-3	chr17	43229951	43230151	+	929.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40296.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	14.54	15.09	17.11	5.23	14.32	10.03	5.98	15.42	21.24	10.04	17.59	13.78
Merged-chr2-160252116-3	chr2	160252023	160252223	+	929.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	75371.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	12.92	4.53	3.99	14.88	9.82	10.66	27.57	26.52	20.06	16.07	19.6	11.59
Merged-chr13-18808475-4	chr13	18808425	18808625	+	929.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	91233.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	8.08	10.82	15.4	10.86	9.41	11.92	5.65	9.36	10.03	13.56	11.05	5.01
Merged-chr4-150473061-3	chr4	150472970	150473170	+	929.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179104.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	31.09	18.36	26.24	23.73	37.23	17.25	15.28	33.06	17.11	10.54	19.09	10.34
Merged-chr11-103178323-3	chr11	103178206	103178406	+	929.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	7168.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	21.4	7.55	19.4	15.69	22.5	30.42	22.59	22.46	12.98	19.08	22.11	12.22
Merged-chr6-97420244-3	chr6	97420150	97420350	+	929.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39036.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	17.36	22.39	10.27	10.46	24.96	18.81	16.61	24.59	32.06	28.62	26.13	12.22
Merged-chr4-117167442-3	chr4	117167330	117167530	+	929.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290662, intron 10 of 19)	intron (NM_001290662, intron 10 of 19)	-11298.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	18.57	19.87	35.37	12.47	22.09	19.13	12.95	11.8	29.31	23.6	28.14	8.14
Merged-chr8-71288778-2	chr8	71288681	71288881	+	929.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16067.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.86	6.04	4.56	4.42	15.14	14.42	13.95	7.91	13.77	23.1	8.54	7.52
Merged-chr4-150341352-2	chr4	150341246	150341446	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59430.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	7.67	17.1	19.4	12.87	20.86	19.13	8.64	8.02	10.62	9.04	3.52	7.52
Merged-chr17-34047637-3	chr17	34047522	34047722	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317722, intron 7 of 64)	intron (NM_001317722, intron 7 of 64)	8484.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	17.77	14.59	8.56	12.87	15.55	23.52	5.31	13.77	26.16	17.07	24.12	9.08
Merged-chr4-46560545-1	chr4	46560445	46560645	+	929.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	5895.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.4	0.0	0.0	1.61	0.82	0.0	1.66	0.08	14.36	10.04	28.14	17.86
Merged-chr10-95850697-3	chr10	95850605	95850805	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89958.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	22.61	7.55	15.97	14.08	14.73	15.05	15.28	21.36	20.46	10.54	20.1	16.92
Merged-chr14-25470532-4	chr14	25470503	25470703	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11418.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	11.71	15.09	11.41	4.02	11.86	7.21	12.29	11.44	12.59	13.56	9.04	14.72
Merged-chr12-112673791-3	chr12	112673702	112673902	+	929.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 1 of 13)	CpG	474.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	7.27	9.31	11.98	10.86	19.64	16.31	18.93	13.37	14.36	11.55	16.08	13.78
Merged-chr6-42397430-3	chr6	42397322	42397522	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2816.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	29.07	13.08	20.54	20.91	27.82	16.62	7.31	27.03	18.1	16.57	13.57	12.53
Merged-chr9-47707940-3	chr9	47707836	47708036	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	110272.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	19.38	15.85	15.4	11.66	16.36	18.5	14.95	12.25	17.31	11.05	10.05	5.33
Merged-chr19-55820410-3	chr19	55820300	55820500	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-74921.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.08	9.56	38.79	23.33	31.5	26.03	20.93	33.31	16.13	15.06	23.11	13.16
Merged-chrX-106149701-3	chrX	106149636	106149836	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	6461.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	12.11	10.82	18.25	7.64	23.32	48.29	27.24	24.31	27.73	27.62	25.63	7.21
Merged-chrX-144318245-6	chrX	144318167	144318367	+	929.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037145, intron 1 of 26)	CpG	301.0	NM_026247	67574.0	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031	asparagine-linked glycosylation 13	protein-coding	4.44	15.85	5.13	13.67	12.68	10.35	10.96	10.32	8.85	18.08	16.08	13.78
Merged-chr11-102925171-3	chr11	102925070	102925270	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197959)	promoter-TSS (NM_197959)	-46.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	14.13	28.42	10.27	10.86	42.14	36.69	20.93	17.16	29.31	20.08	25.63	21.62
Merged-chr8-111237490-3	chr8	111237391	111237591	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	B3|SINE|B2	21711.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	9.29	14.34	11.41	8.85	20.46	24.46	29.23	32.78	25.57	23.1	31.15	15.66
Merged-chr18-5820457-1	chr18	5820357	5820557	+	929.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227810.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	5.03	3.42	6.44	5.32	8.15	3.99	3.67	18.29	12.55	16.58	8.46
Merged-chr18-57352531-3	chr18	57352456	57352656	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2177.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	14.94	12.58	7.42	14.08	25.36	16.62	18.6	25.29	23.41	11.55	11.56	10.96
Merged-chr9-41158261-3	chr9	41158133	41158333	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176860)	promoter-TSS (NM_176860)	-171.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	11.31	7.29	22.82	14.88	14.32	8.78	12.29	19.32	23.21	26.61	25.63	11.59
Merged-chr3-51182694-3	chr3	51182580	51182780	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41767.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	9.29	11.32	22.82	10.05	20.86	28.54	20.59	44.72	36.98	17.07	50.75	26.31
Merged-chr4-139212374-2	chr4	139212269	139212469	+	929.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	MIRb|SINE|MIR	18258.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	18.98	6.04	15.97	21.72	0.41	2.51	2.33	4.77	9.83	14.56	15.07	9.4
Merged-chr9-123563759-3	chr9	123563660	123563860	+	929.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357485, intron 7 of 19)	intron (NM_001357485, intron 7 of 19)	34007.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	27.05	12.58	11.41	20.11	14.32	11.92	13.29	36.11	19.87	12.05	24.12	14.1
Merged-chr5-72329662-3	chr5	72329572	72329772	+	929.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016869, exon 16 of 22)	exon (NM_016869, exon 16 of 22)	126329.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	11.71	17.36	12.55	43.04	19.23	22.26	24.58	52.23	36.58	15.57	57.28	32.89
Merged-chr1-171038565-3	chr1	171038454	171038654	+	929.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19628.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	25.04	11.82	20.54	21.72	6.95	17.25	8.3	13.93	36.58	29.12	17.08	16.29
Merged-chr19-46014720-3	chr19	46014612	46014812	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11234.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	11.71	12.07	17.68	13.67	16.77	16.62	10.63	14.22	21.83	11.55	24.62	14.1
Merged-chr11-46077905-6	chr11	46077834	46078034	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	21950.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.23	1.26	0.0	4.42	4.91	8.15	11.63	5.55	6.69	6.03	12.06	6.89
Merged-chr2-48690797-3	chr2	48690702	48690902	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123307.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.06	11.57	15.97	35.39	11.05	6.9	16.94	28.71	16.13	6.03	19.09	13.78
Merged-chr1-181852628-3	chr1	181852516	181852716	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10215.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	14.94	24.15	31.95	36.2	22.5	9.41	20.93	28.6	18.1	10.54	20.6	13.16
Merged-chr10-25268690-3	chr10	25268602	25268802	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 4 of 7)	intron (NM_018747, intron 4 of 7)	30461.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	14.54	16.1	10.84	24.53	15.14	19.76	10.3	23.64	24.98	18.58	26.63	15.04
Merged-chrX-70385881-3	chrX	70385771	70385971	+	929.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026787)	promoter-TSS (NM_026787)	-42.0	NM_026787	68618.0	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	14.54	19.12	10.27	20.51	27.41	37.94	30.23	28.79	41.89	24.6	57.28	10.02
Merged-chr13-30987886-3	chr13	30987783	30987983	+	929.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13836.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	10.9	11.82	6.28	3.62	13.09	30.73	25.58	34.63	16.92	19.08	21.1	14.41
Merged-chr4-102511090-3	chr4	102510987	102511187	+	929.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-58973.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	27.46	14.59	39.93	22.93	18.0	8.78	5.98	19.07	24.0	12.05	33.67	8.14
Merged-chr6-3344519-3	chr6	3344426	3344626	+	929.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55045.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	12.11	15.85	20.54	2.41	31.5	29.79	23.25	8.07	23.8	15.57	19.6	7.52
Merged-chr17-83903615-3	chr17	83903500	83903700	+	929.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49182.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	21.0	14.09	22.82	9.65	11.45	23.52	11.96	16.91	17.51	23.1	18.09	15.66
Merged-chr3-10258543-1	chr3	10258443	10258643	+	929.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-4291.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.44	4.53	1.14	5.23	7.36	1.57	7.64	10.26	2.16	1.0	2.01	3.45
Merged-chr9-106308382-3	chr9	106308282	106308482	+	929.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27321.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	21.4	24.65	7.99	11.66	18.0	19.76	12.62	10.35	27.93	25.61	15.07	11.28
Merged-chr6-122653262-3	chr6	122653161	122653361	+	929.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26837.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	12.92	12.58	17.11	8.04	30.68	16.93	20.93	18.5	26.55	17.57	21.1	9.71
Merged-chr13-74494505-3	chr13	74494395	74494595	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-545.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	18.57	12.58	12.55	18.1	20.46	10.03	14.28	14.52	13.77	13.05	14.07	11.28
Merged-chr15-3583456-3	chr15	3583321	3583521	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010284)	promoter-TSS (NM_010284)	-69.0	NM_010284	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	19.38	18.86	7.42	12.47	21.68	18.81	23.25	18.5	14.75	19.58	26.13	14.72
Merged-chr8-23207920-3	chr8	23207808	23208008	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018743, intron 1 of 12)	CpG	545.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	8.88	14.84	15.97	8.85	18.82	19.76	15.28	14.92	19.28	20.59	19.09	14.72
Merged-chr4-155529492-3	chr4	155529399	155529599	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160016, intron 3 of 11)	B1_Mur4|SINE|Alu	-32882.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	17.36	17.86	14.83	10.86	13.91	26.03	9.97	18.11	29.11	26.11	18.09	14.41
Merged-chr2-61512249-3	chr2	61512155	61512355	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-66331.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	14.54	9.81	22.82	16.49	15.96	13.8	9.63	23.38	16.52	4.02	20.1	6.58
Merged-chr14-121427308-3	chr14	121427126	121427326	+	929.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47996.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.46	14.34	1.71	4.42	6.14	15.37	13.29	1.99	16.92	18.08	16.08	8.46
Merged-chr2-157838426-3	chr2	157838328	157838528	+	929.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-76225.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	15.75	7.8	26.24	12.07	11.86	9.72	14.62	21.11	12.19	3.51	19.6	22.56
Merged-chr9-95640134-3	chr9	95640047	95640247	+	929.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	2519.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	14.54	6.79	10.27	17.7	14.32	14.74	10.63	15.5	17.9	26.11	28.64	17.23
Merged-chr2-164444594-3	chr2	164444476	164444676	+	929.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1388.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	13.33	17.36	11.98	9.25	36.82	44.53	19.27	19.74	39.93	49.71	34.67	18.48
Merged-chr7-10495444-3	chr7	10495353	10495553	+	929.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009577)	promoter-TSS (NM_009577)	-72.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	13.73	8.8	13.12	15.28	9.41	8.47	13.95	17.8	15.54	18.58	28.14	12.84
Merged-chr7-43667777-3	chr7	43667670	43667870	+	929.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-4261.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	21.0	34.71	18.83	10.46	24.55	37.94	8.97	2.89	60.78	31.63	27.13	17.23
Merged-chr5-30850480-3	chr5	30850379	30850579	+	929.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11328.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	16.56	15.85	15.4	13.67	18.82	23.2	10.3	15.84	21.64	34.14	26.63	19.42
Merged-chr11-69949008-3	chr11	69948901	69949101	+	929.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-804.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	11.31	15.85	21.11	14.48	24.55	14.74	11.29	7.74	15.93	14.56	17.59	10.96
Merged-chr8-10835278-3	chr8	10835223	10835423	+	929.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47131.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	17.77	20.12	16.54	12.07	9.41	14.11	3.99	14.19	9.24	10.54	26.13	4.07
Merged-chr18-67278631-3	chr18	67278517	67278717	+	929.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10606.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	13.73	11.07	15.4	5.23	15.96	14.42	3.65	13.57	20.26	18.58	21.61	15.04
Merged-chr19-42144246-2	chr19	42144161	42144361	+	929.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3128.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	27.05	15.09	13.69	8.45	27.82	43.9	13.95	9.53	3.93	9.04	5.53	5.95
Merged-chr9-118664731-2	chr9	118664629	118664829	+	929.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46963.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.88	2.26	3.42	6.44	23.32	10.03	1.33	9.64	18.88	20.59	24.12	13.47
Merged-chr9-118659999-3	chr9	118659894	118660094	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 6 of 27)	MIRb|SINE|MIR	-51698.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.88	2.52	13.69	22.93	43.77	25.4	24.91	36.48	36.98	24.1	45.73	15.35
Merged-chr3-138493908-3	chr3	138493821	138494021	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4539.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	23.02	16.35	36.51	38.61	40.5	27.28	31.22	40.91	13.18	19.58	21.1	1.88
Merged-chr6-145291556-3	chr6	145291459	145291659	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41007.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	19.79	6.79	15.4	20.11	17.59	22.26	12.62	19.93	13.96	9.54	34.17	10.34
Merged-chr11-21729256-1	chr11	21729156	21729356	+	929.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145425, intron 12 of 17)	intron (NM_145425, intron 12 of 17)	156975.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	3.23	1.01	4.56	0.0	5.32	10.66	14.28	18.36	3.15	4.02	7.54	8.14
Merged-chr7-43538735-3	chr7	43538641	43538841	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5570.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	9.29	16.85	29.66	14.48	31.91	24.77	32.88	33.59	19.47	17.57	29.65	18.48
Merged-chr13-35380777-2	chr13	35380686	35380886	+	929.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-168738.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	10.5	14.09	14.83	21.32	22.5	16.31	11.96	18.42	0.0	0.5	0.5	1.88
Merged-chr16-30013250-3	chr16	30013147	30013347	+	929.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	4580.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	15.75	14.34	22.82	29.36	24.14	9.09	33.88	57.0	10.62	13.05	33.67	10.96
Merged-chr15-102673738-2	chr15	102673639	102673839	+	929.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1873.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	2.83	2.77	3.99	2.01	14.73	12.54	6.31	10.35	21.24	14.56	10.55	5.01
Merged-chr19-4962164-4	chr19	4962114	4962314	+	929.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025553)	promoter-TSS (NM_025553)	-92.0	NM_025553	66419.0	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	16.96	15.85	15.4	11.26	11.86	14.42	16.94	12.17	21.24	28.12	19.6	19.42
Merged-chr16-31933833-5	chr16	31933694	31933894	+	929.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-57.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	10.5	7.29	13.69	7.64	6.95	4.39	4.65	9.64	16.92	10.54	6.53	12.53
Merged-chr4-132334955-3	chr4	132334860	132335060	+	929.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133878, intron 6 of 9)	intron (NM_133878, intron 6 of 9)	-5422.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	34.73	42.51	34.23	22.93	13.91	13.48	6.31	4.35	72.38	82.35	89.44	26.63
Merged-chr14-30612735-3	chr14	30612667	30612867	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-2457.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.88	15.59	11.41	16.09	18.82	14.42	14.95	10.68	20.85	16.57	13.06	9.08
Merged-chr5-135909138-3	chr5	135909022	135909222	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21203.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	12.11	12.58	13.69	14.08	37.23	33.55	25.91	32.89	23.21	18.08	14.57	5.64
Merged-chr18-44759250-3	chr18	44759134	44759334	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085373, exon 2 of 19)	exon (NM_001085373, exon 2 of 19)	52948.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	13.33	17.1	12.55	6.84	16.36	16.62	12.62	12.87	23.21	23.1	14.07	17.54
Merged-chr9-123940261-3	chr9	123940152	123940352	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28440.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	16.96	16.1	26.81	4.42	22.5	37.63	19.27	9.28	21.44	14.06	12.06	4.39
Merged-chr19-5800286-5	chr19	5800134	5800334	+	929.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	2438.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	13.33	13.58	26.24	19.71	18.41	15.05	9.3	8.16	13.18	19.08	16.58	13.78
Merged-chr7-35167167-3	chr7	35167079	35167279	+	929.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-19206.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	12.92	7.29	12.55	12.07	13.09	17.25	14.28	24.03	21.05	16.07	33.67	8.46
Merged-chr1-181210711-3	chr1	181210616	181210816	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1262.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	21.8	17.61	9.7	12.87	21.27	17.56	14.62	15.59	23.21	18.08	29.14	19.11
Merged-chr17-23193657-3	chr17	23193550	23193750	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	-398.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	21.4	14.34	18.25	28.56	24.96	33.87	18.93	37.57	9.64	17.07	22.61	6.58
Merged-chr17-8856636-3	chr17	8856540	8856740	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	6655.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	14.54	6.54	14.83	8.04	18.0	16.93	22.92	25.79	50.75	50.71	54.27	18.48
Merged-chr8-124150167-1	chr8	124150067	124150267	+	929.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81227.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.57	0.8	0.0	1.88	0.33	0.03	11.8	12.55	15.58	13.78
Merged-chr10-91271375-3	chr10	91271267	91271467	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50748.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	12.11	4.02	12.55	11.66	26.18	18.81	4.65	24.11	27.34	28.12	17.08	20.05
Merged-chr9-124122226-3	chr9	124122107	124122307	+	929.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009917, intron 1 of 1)	intron (NM_009917, intron 1 of 1)	664.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	14.13	13.58	12.55	10.46	13.91	15.05	7.64	16.68	24.39	21.59	37.18	15.66
Merged-chr3-95433633-3	chr3	95433514	95433714	+	929.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-776.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	4.85	12.07	15.4	8.45	9.41	10.98	7.64	7.65	15.54	15.57	15.07	9.71
Merged-chr11-96766745-2	chr11	96766656	96766856	+	929.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163389)	TTS (NM_001163389)	10799.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	10.9	22.89	28.52	13.27	13.09	7.21	12.29	7.4	7.67	1.51	4.52	0.31
Merged-chr1-175693562-3	chr1	175693449	175693649	+	929.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-917.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	19.79	14.34	5.7	10.86	9.82	9.41	13.29	17.1	13.18	19.08	25.12	11.9
Merged-chr12-105937300-3	chr12	105937194	105937394	+	929.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72969.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	15.75	21.63	25.67	40.22	19.23	14.42	17.61	25.04	14.36	6.53	27.13	17.54
Merged-chr10-40349869-3	chr10	40349765	40349965	+	929.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	CpG	557.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	18.98	11.82	23.39	6.03	9.82	9.72	10.96	14.89	10.82	24.6	16.58	13.16
Merged-chr8-18912419-2	chr8	18912315	18912515	+	929.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38456.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	14.54	13.33	18.25	12.07	16.77	14.42	11.96	23.24	2.75	2.51	0.0	0.63
Merged-chr5-99342632-3	chr5	99342527	99342727	+	929.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	(CAAAAA)n|Simple_repeat|Simple_repeat	-89700.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	24.63	39.74	38.22	18.9	13.91	17.87	5.98	9.45	22.62	8.03	12.06	10.65
Merged-chr14-79394725-3	chr14	79394631	79394831	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3041.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	16.96	16.85	21.68	10.86	9.82	22.89	13.29	22.93	30.68	23.6	11.56	15.98
Merged-chr13-9878117-3	chr13	9878023	9878223	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-112802.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	15.75	10.82	29.09	15.28	13.91	11.6	14.95	25.6	24.78	12.55	51.25	16.92
Merged-chr10-111031673-3	chr10	111031572	111031772	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21606.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	14.54	15.09	13.69	12.87	16.36	11.92	14.28	18.87	11.21	17.57	14.07	13.47
Merged-chr2-164861006-3	chr2	164860916	164861116	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3308.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	14.13	9.06	5.7	6.03	15.55	21.95	17.94	11.21	25.57	14.06	14.57	13.16
Merged-chr10-43042954-3	chr10	43042853	43043053	+	929.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175407, intron 5 of 6)	LTR40A1|LTR|ERVL	-51791.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	9.29	4.02	20.54	13.27	10.23	25.71	22.92	22.01	24.39	21.59	35.68	24.43
Merged-chr8-122941227-3	chr8	122941128	122941328	+	929.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	RMER19C|LTR|ERVK	92854.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	26.25	15.85	29.66	10.46	11.86	13.8	3.99	8.94	16.33	10.04	10.05	4.07
Merged-chr10-88333677-3	chr10	88333506	88333706	+	929.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	23469.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.65	6.04	4.56	2.01	9.41	2.2	6.64	9.03	9.64	3.01	14.07	6.27
Merged-chr10-80688053-3	chr10	80687944	80688144	+	929.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 3 of 3)	B3|SINE|B2	-11751.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	14.13	16.35	15.97	27.75	22.5	23.2	5.31	16.85	38.55	10.04	19.09	19.42
Merged-chr2-102163303-1	chr2	102163203	102163403	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	23157.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.81	0.0	1.14	0.0	11.45	4.7	4.98	8.27	2.95	1.0	3.52	3.76
Merged-chr9-62970508-3	chr9	62970411	62970611	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	10368.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	32.71	23.39	27.95	12.47	31.09	41.08	9.63	21.34	36.39	40.17	32.16	8.77
Merged-chr18-49633973-1	chr18	49633873	49634073	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110684.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	2.02	0.5	0.0	6.84	10.64	3.45	26.24	30.67	10.42	2.01	13.57	7.52
Merged-chr17-34238858-1	chr17	34238758	34238958	+	929.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	-47.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	7.67	6.04	7.99	6.44	5.73	9.72	2.99	4.18	17.11	6.53	5.53	7.21
Merged-chr4-138083307-3	chr4	138083217	138083417	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355700, intron 2 of 30)	intron (NM_001355700, intron 2 of 30)	55201.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	14.54	15.85	11.41	18.5	11.86	11.6	12.62	14.1	22.03	22.59	17.59	13.16
Merged-chr13-35665677-3	chr13	35665576	35665776	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009881, intron 1 of 9)	MIR3|SINE|MIR	5814.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	25.04	19.37	33.66	21.72	27.0	44.21	9.97	33.36	32.45	16.57	30.65	10.65
Merged-chr7-136321539-2	chr7	136321440	136321640	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27875.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	7.27	4.53	2.85	7.24	5.32	5.64	16.61	22.23	21.64	11.55	33.16	10.96
Merged-chr15-86215675-1	chr15	86215575	86215775	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	1216.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.04	5.53	9.7	8.45	4.91	1.57	7.31	9.62	4.72	0.5	5.02	9.71
Merged-chr1-93575436-1	chr1	93575336	93575536	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	60291.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	8.08	4.53	5.13	4.83	4.5	8.47	5.65	9.17	6.49	0.5	4.02	7.21
Merged-chr17-34635873-3	chr17	34635765	34635965	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6179.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	13.73	14.34	7.42	6.44	17.18	21.95	5.31	7.18	16.92	21.09	10.55	5.33
Merged-chr16-4847256-1	chr16	4847156	4847356	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	11840.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	5.25	7.04	6.85	8.85	9.82	2.82	10.3	17.5	6.69	9.54	23.62	8.14
Merged-chr15-81511948-1	chr15	81511848	81512048	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45632.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	2.02	4.78	1.14	1.61	2.45	5.02	5.31	1.57	5.31	5.02	4.02	3.76
Merged-chr8-116268068-1	chr8	116267968	116268168	+	929.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-236947.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	5.65	2.01	6.28	1.21	7.77	14.11	1.33	2.61	18.29	16.57	15.07	5.64
Merged-chr15-12376885-2	chr15	12376803	12377003	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	55407.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	14.13	11.32	5.13	3.22	8.59	14.42	13.62	7.54	6.29	6.53	5.53	6.27
Merged-chr18-39572317-1	chr18	39572217	39572417	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85072.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.85	2.52	0.57	2.82	4.91	8.78	2.99	13.21	7.28	5.52	9.55	11.28
Merged-chr16-24578665-3	chr16	24578552	24578752	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	49338.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	23.02	11.07	7.99	3.62	30.27	41.71	10.96	11.5	18.88	16.07	9.55	3.13
Merged-chr10-81542045-1	chr10	81541945	81542145	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	3001.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	6.46	4.28	5.13	12.07	11.45	8.47	3.65	13.82	6.49	6.53	12.56	5.33
Merged-chr15-98089547-3	chr15	98089446	98089646	+	928.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144851, intron 1 of 17)	intron (NM_144851, intron 1 of 17)	-3043.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	19.38	11.07	12.55	6.44	12.27	12.54	7.97	8.55	25.57	20.59	12.06	6.58
Merged-chr19-32715364-3	chr19	32715272	32715472	+	928.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-3074.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	11.71	19.62	22.25	18.5	20.86	24.15	17.94	17.66	23.8	21.59	17.08	8.14
Merged-chr10-41674490-3	chr10	41674402	41674602	+	928.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 8 of 47)	B4A|SINE|B4	41961.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	14.13	12.83	11.41	4.02	11.86	12.54	9.97	13.23	18.1	13.56	8.04	4.39
Merged-chr6-39372925-3	chr6	39372819	39373019	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361617, exon 2 of 17)	5' UTR (NM_001361617, exon 2 of 17)	4516.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	18.17	20.12	36.51	27.35	28.64	14.74	18.27	20.13	14.75	9.54	21.61	6.89
Merged-chr3-136368780-3	chr3	136368703	136368903	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42737.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	13.33	11.07	11.98	25.34	18.0	25.09	10.63	20.38	31.86	26.11	14.57	17.86
Merged-chr16-3723489-3	chr16	3723391	3723591	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5367.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	12.52	13.33	9.13	3.22	63.0	95.33	56.14	29.92	92.05	97.91	74.37	30.39
Merged-chr3-37140342-3	chr3	37140241	37140441	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-14387.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	2.83	7.55	25.67	19.71	13.09	7.21	17.27	18.2	10.23	11.05	17.59	7.83
Merged-chr3-58122885-3	chr3	58122780	58122980	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40927.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	13.73	13.58	4.56	16.89	9.0	17.87	4.65	12.17	17.51	16.57	9.04	10.65
Merged-chr16-65549132-3	chr16	65549041	65549241	+	928.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026879, intron 2 of 5)	intron (NM_026879, intron 2 of 5)	13556.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	14.13	7.8	26.24	26.14	12.27	10.98	8.3	20.8	16.52	22.09	16.08	14.41
Merged-chr2-159900127-3	chr2	159900028	159900228	+	928.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	20.19	11.07	15.97	30.16	32.73	16.93	11.96	31.74	36.19	23.6	29.14	23.81
Merged-chr15-101316031-3	chr15	101315929	101316129	+	928.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22817.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	12.52	17.86	22.82	12.87	23.32	15.05	11.96	11.58	19.08	19.58	12.56	10.34
Merged-chr5-29843002-2	chr5	29842895	29843095	+	928.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107059.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	5.65	3.52	35.37	32.58	11.05	3.45	17.94	22.85	13.96	7.03	6.53	1.88
Merged-chr9-120577730-3	chr9	120577653	120577853	+	928.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073359, exon 1 of 1)	non-coding (NR_073359, exon 1 of 1)	422.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	31.9	22.64	13.12	18.1	27.0	37.32	24.25	30.22	38.55	28.62	37.18	21.3
Merged-chrX-139552307-1	chrX	139552207	139552407	+	928.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175326, intron 13 of 13)	L1M4|LINE|L1	-11033.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	1.21	2.52	3.42	1.61	13.91	10.98	16.28	8.21	3.34	16.57	7.54	6.27
Merged-chr7-73557980-2	chr7	73557863	73558063	+	928.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037569, intron 1 of 4)	CpG	432.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	14.94	15.34	9.7	10.46	14.32	10.35	17.61	10.26	20.26	18.58	11.05	19.74
Merged-chr17-10848961-3	chr17	10848859	10849059	+	928.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	8600.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	5.25	7.8	14.26	12.87	15.14	13.48	10.96	17.07	12.0	15.06	40.2	12.53
Merged-chr2-105399160-7	chr2	105399167	105399367	+	928.7976070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	52.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	12.52	12.07	17.11	22.12	12.68	10.03	23.58	15.98	11.21	13.56	17.08	11.28
Merged-chr7-19227412-3	chr7	19227309	19227509	+	928.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-980.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	8.48	12.32	14.83	8.85	11.86	7.84	4.65	7.35	23.41	15.57	6.53	14.41
Merged-chr3-95996142-3	chr3	95996046	95996246	+	928.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023320)	promoter-TSS (NM_023320)	-307.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	10.9	14.59	9.13	11.66	15.55	15.68	11.29	20.16	18.29	16.07	16.08	5.95
Merged-chr2-84999684-3	chr2	84999601	84999801	+	928.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145526, intron 10 of 11)	intron (NM_145526, intron 10 of 11)	11486.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	10.09	13.08	22.25	10.46	4.91	16.93	11.96	13.32	28.13	13.56	38.69	18.48
Merged-chr19-36349206-5	chr19	36349080	36349280	+	928.771423	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-29887.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	9.69	13.83	8.56	8.85	13.91	12.23	19.6	11.27	10.82	7.53	25.63	9.4
Merged-chr2-45654869-2	chr2	45654771	45654971	+	928.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41734.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	8.08	5.53	0.0	7.64	10.23	21.01	16.61	11.58	15.14	7.53	25.63	5.64
Merged-chr9-71485529-3	chr9	71485400	71485600	+	928.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164793)	promoter-TSS (NM_001164793)	483.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	4.04	9.31	8.56	10.86	8.18	13.17	12.29	11.19	13.96	15.57	27.64	17.54
Merged-chr2-154300715-3	chr2	154300634	154300834	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-6510.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	12.11	12.83	9.13	8.85	16.77	15.99	9.97	10.35	20.06	13.05	20.1	8.14
Merged-chr4-86632640-3	chr4	86632540	86632740	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20585.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	7.67	11.82	14.26	13.27	12.27	6.59	5.98	12.53	25.96	23.1	47.74	24.75
Merged-chr2-120661961-3	chr2	120661848	120662048	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	52353.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	24.23	17.86	30.8	16.49	10.23	16.62	8.64	14.83	21.44	18.08	15.07	14.72
Merged-chr5-66041491-3	chr5	66041400	66041600	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 3 of 6)	Lx9|LINE|L1	-37215.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	10.9	9.56	19.4	3.22	12.68	39.2	27.57	9.25	18.69	30.63	35.17	7.21
Merged-chr10-69320933-3	chr10	69320842	69321042	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31970.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	20.19	26.41	21.68	11.66	23.73	16.31	20.26	25.57	29.11	14.56	35.17	21.3
Merged-chr10-59735527-4	chr10	59735380	59735580	+	928.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	32917.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	12.11	11.32	7.99	6.44	7.36	8.15	9.3	10.12	8.85	3.01	6.53	5.95
Merged-chr2-84426631-3	chr2	84426463	84426663	+	928.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1297.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	7.67	6.79	13.69	18.5	13.91	3.76	11.29	9.79	8.65	5.52	9.55	8.14
Merged-chr10-20774034-3	chr10	20773896	20774096	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-48918.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	12.52	5.53	14.26	7.64	18.41	10.35	15.61	11.97	13.77	11.05	17.59	13.78
Merged-chr6-136794412-1	chr6	136794312	136794512	+	928.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10019.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0.4	0.0	0.0	0.4	0.41	0.0	1.33	0.08	18.69	8.54	15.58	10.02
Merged-chr2-22811013-3	chr2	22810912	22811112	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	36685.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	13.33	7.29	6.28	14.48	36.82	40.45	39.2	30.67	27.14	31.13	39.19	15.35
Merged-chr19-5806121-3	chr19	5806022	5806222	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3450.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	20.59	11.32	21.68	16.09	25.77	10.66	15.28	20.83	20.65	12.05	18.59	11.9
Merged-chr11-48788817-3	chr11	48788730	48788930	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11530.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	18.98	21.38	18.83	13.67	23.73	20.07	9.3	14.38	25.37	22.59	24.62	10.96
Merged-chr15-27715525-3	chr15	27715446	27715646	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34004.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	15.75	8.05	7.42	10.86	17.59	16.31	9.3	14.47	18.69	16.07	32.66	10.96
Merged-chr3-126612943-3	chr3	126612846	126613046	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	Lx5c|LINE|L1	15995.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	9.69	6.54	12.55	7.24	18.41	13.48	14.62	22.4	28.13	33.64	50.75	31.95
Merged-chr3-27656951-2	chr3	27656841	27657041	+	928.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	53511.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.25	4.02	13.12	6.44	19.64	24.77	8.3	30.11	19.08	14.56	31.15	8.46
Merged-chr7-19300667-3	chr7	19300563	19300763	+	928.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9382.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	24.23	17.86	5.7	4.83	15.14	9.41	3.32	2.89	12.78	10.54	4.52	14.41
Merged-chr2-5034778-3	chr2	5034680	5034880	+	928.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 8 of 13)	intron (NM_001356487, intron 8 of 13)	-21989.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	10.5	12.83	16.54	13.27	9.0	9.72	11.29	12.53	15.34	16.07	28.64	13.78
Merged-chr17-56883882-3	chr17	56883789	56883989	+	928.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030141, intron 10 of 13)	intron (NM_030141, intron 10 of 13)	8256.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	13.33	17.36	9.7	5.23	10.64	19.44	11.63	8.13	18.29	13.05	24.12	17.23
Merged-chr18-79284182-3	chr18	79284061	79284261	+	928.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-174770.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	8.48	10.06	13.69	20.51	18.41	25.09	17.27	17.13	16.33	13.56	18.59	10.02
Merged-chr3-9034692-3	chr3	9034605	9034805	+	928.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27259.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	9.29	7.8	11.41	14.48	25.77	23.52	19.27	34.37	128.83	95.4	195.47	74.87
Merged-chr2-132096020-3	chr2	132095921	132096121	+	928.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 2 of 6)	Lx8|LINE|L1	49087.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	20.19	12.32	19.4	12.87	21.27	15.68	6.31	16.71	15.74	13.56	14.57	16.6
Merged-chr16-44765788-3	chr16	44765692	44765892	+	928.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	56.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	16.96	11.57	17.68	17.29	13.5	15.99	8.64	15.56	14.36	13.05	9.04	9.71
Merged-chr6-37601271-3	chr6	37601161	37601361	+	928.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71088.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	14.94	12.83	13.69	23.73	10.23	7.21	16.61	33.34	21.83	21.59	35.68	14.41
Merged-chr17-74454107-3	chr17	74454013	74454213	+	928.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4995.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	12.52	11.57	19.4	14.08	22.5	26.03	14.62	12.06	30.68	12.05	18.59	10.34
Merged-chr3-61416685-3	chr3	61416597	61416797	+	928.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52190.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.25	13.58	10.84	27.35	18.0	17.25	19.6	17.3	17.9	10.54	15.58	12.22
Merged-chr16-94556439-3	chr16	94556344	94556544	+	928.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13762.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	11.31	12.58	15.4	12.07	14.32	23.2	11.63	19.26	10.62	4.52	22.11	16.92
Merged-chr4-134117183-2	chr4	134117103	134117303	+	928.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	11550.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	20.59	6.79	8.56	6.44	12.27	13.17	6.64	10.96	77.69	87.37	80.9	30.07
Merged-chr6-85029877-1	chr6	85029777	85029977	+	928.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	39636.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	4.04	4.02	4.56	11.26	6.55	5.33	8.64	14.55	7.47	5.02	6.03	6.89
Merged-chr1-59496104-3	chr1	59495999	59496199	+	928.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13952.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	20.59	13.08	14.26	21.72	33.55	25.71	15.28	25.4	28.32	11.55	13.57	14.41
Merged-chr7-90029600-8	chr7	90029588	90029788	+	928.474976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	529.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	21.0	21.13	23.96	18.9	18.82	22.58	17.27	23.1	16.52	19.58	32.66	10.65
Merged-chr12-40536294-4	chr12	40536142	40536342	+	928.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	90189.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.63	3.27	9.7	6.84	7.77	8.47	7.64	8.3	9.24	5.02	9.04	6.27
Merged-chr10-17408023-3	chr10	17407906	17408106	+	928.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-312224.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	12.11	9.56	12.55	15.28	27.41	21.95	25.91	24.14	24.98	22.59	27.64	9.08
Merged-chr6-125333020-3	chr6	125332919	125333119	+	928.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	11679.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	8.88	17.61	14.26	13.27	11.45	13.48	14.95	10.43	28.13	22.59	32.16	15.04
Merged-chr7-116524731-3	chr7	116524626	116524826	+	928.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360375, intron 5 of 14)	intron (NM_001360375, intron 5 of 14)	20357.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	12.11	8.8	19.4	15.69	17.18	13.17	13.95	30.98	18.88	18.08	34.17	15.66
Merged-chr2-120652054-2	chr2	120651922	120652122	+	928.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42427.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	1.62	2.77	4.56	4.83	8.18	1.88	3.65	8.97	9.83	13.05	29.14	21.93
Merged-chr12-104066487-3	chr12	104066368	104066568	+	928.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11491.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	10.9	13.08	10.27	13.67	7.77	5.02	4.32	13.35	19.47	28.62	11.56	23.81
Merged-chr5-21210616-3	chr5	21210532	21210732	+	928.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 5 of 26)	(CA)n|Simple_repeat|Simple_repeat	24365.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	24.23	14.34	7.42	18.5	16.77	9.72	9.97	19.88	9.83	12.55	23.11	14.1
Merged-chr18-23987064-3	chr18	23986968	23987168	+	928.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2566.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	9.69	14.09	20.54	24.94	15.14	12.86	20.26	11.33	12.0	14.56	10.05	6.58
Merged-chr8-117303790-3	chr8	117303696	117303896	+	928.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-45374.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	9.29	9.56	18.25	15.28	16.77	18.5	6.98	19.49	17.11	16.07	27.13	16.29
Merged-chr15-63494729-2	chr15	63494631	63494831	+	928.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15123.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	25.84	6.79	13.69	21.32	19.23	15.99	18.93	16.85	1.57	0.0	1.0	0.0
Merged-chr3-79228574-2	chr3	79228538	79228738	+	928.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	15719.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	2.83	2.77	3.99	4.83	7.77	2.2	3.65	3.81	5.51	4.52	9.55	10.96
Merged-chr7-90140425-2	chr7	90140317	90140517	+	928.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	10204.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.06	11.82	5.13	6.84	13.09	18.81	12.62	5.58	21.83	9.04	20.1	6.89
Merged-chr18-60803093-3	chr18	60802987	60803187	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-762.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	11.71	15.85	19.4	9.65	17.18	7.21	8.97	12.73	33.63	27.11	29.14	31.33
Merged-chr5-97345940-3	chr5	97345826	97346026	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46404.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	16.56	13.08	14.26	12.07	9.82	15.99	15.61	15.67	18.1	10.04	14.07	4.7
Merged-chr6-125103293-3	chr6	125103171	125103371	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346610, intron 10 of 38)	intron (NM_001346610, intron 10 of 38)	6247.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	46.03	18.61	31.95	20.51	32.73	33.24	24.25	31.01	9.24	8.03	8.04	6.89
Merged-chr17-34931839-1	chr17	34931739	34931939	+	928.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010893, intron 1 of 5)	intron (NM_010893, intron 1 of 5)	586.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	6.86	11.57	10.27	8.45	11.86	10.35	7.64	11.52	13.57	18.08	17.59	8.46
Merged-chr2-71866787-1	chr2	71866687	71866887	+	928.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-6437.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.42	1.01	7.42	0.8	1.23	4.39	2.33	5.13	16.13	10.04	16.08	10.96
Merged-chr1-9907270-3	chr1	9907174	9907374	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1364.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	7.27	11.32	10.84	12.87	10.64	16.62	4.65	15.76	15.54	14.06	26.63	16.6
Merged-chr6-106794240-3	chr6	106794153	106794353	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175357, exon 4 of 11)	exon (NM_175357, exon 4 of 11)	5834.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	16.96	13.33	29.09	20.91	15.96	11.6	9.97	20.41	23.8	11.55	40.2	9.71
Merged-chrX-52784130-3	chrX	52784047	52784247	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7053.0	NM_001034059	434778.0	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	8.88	14.34	15.97	16.09	9.82	7.21	9.3	17.41	12.78	3.51	19.6	13.16
Merged-chr13-55318719-5	chr13	55318610	55318810	+	928.320007	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008739)	TTS (NM_008739)	3270.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	5.65	15.09	9.13	10.05	9.82	9.72	9.97	9.73	11.8	12.05	17.59	11.59
Merged-chr12-8924517-2	chr12	8924419	8924619	+	928.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3212.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.86	5.53	9.13	7.64	8.18	9.72	13.29	16.6	17.9	17.57	24.62	6.89
Merged-chr16-10489288-3	chr16	10489190	10489390	+	928.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-491.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	10.9	10.31	20.54	14.88	9.82	12.23	12.62	19.82	23.8	28.62	13.06	12.22
Merged-chr2-19580742-3	chr2	19580634	19580834	+	928.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-26824.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	35.53	26.16	33.66	34.59	9.0	10.03	9.63	13.01	22.82	10.54	16.08	9.08
Merged-chr7-55852583-3	chr7	55852483	55852683	+	928.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	MTD|LTR|ERVL-MaLR	10512.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	32.3	24.65	27.38	11.66	15.55	23.2	16.61	8.69	15.93	15.57	29.65	9.08
Merged-chr18-26015355-3	chr18	26015236	26015436	+	928.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261179.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	14.94	9.81	10.27	14.88	28.23	18.81	17.61	28.46	14.95	26.61	29.14	10.34
Merged-chr18-68692151-2	chr18	68692066	68692266	+	928.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-47234.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	27.46	50.81	20.54	29.76	4.91	12.86	7.64	2.21	19.67	10.04	20.1	29.13
Merged-chr5-118636969-3	chr5	118636893	118637093	+	928.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	76274.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	24.23	14.84	15.97	20.91	16.77	12.54	8.97	10.54	9.83	12.05	8.54	11.28
Merged-chr11-21452779-2	chr11	21452686	21452886	+	928.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	58394.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	4.44	7.29	13.12	9.25	16.36	11.29	8.64	12.93	18.49	15.57	22.61	13.47
Merged-chr16-36752170-2	chr16	36752071	36752271	+	928.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021301, intron 21 of 21)	intron (NM_021301, intron 21 of 21)	32791.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.04	5.28	9.13	6.03	13.09	8.47	5.65	12.22	19.87	19.58	33.67	16.92
Merged-chr1-191166445-3	chr1	191166374	191166574	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1657.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	17.77	24.65	15.4	12.87	20.86	34.18	16.61	15.76	12.0	26.11	35.68	8.14
Merged-chr11-50050557-3	chr11	50050450	50050650	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-19152.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	27.86	15.59	21.68	10.46	27.0	33.24	25.91	17.47	31.08	13.56	24.12	11.28
Merged-chr10-67182788-3	chr10	67182689	67182889	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-2961.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	16.96	20.88	13.69	35.8	11.45	15.37	6.64	22.37	18.49	23.6	19.09	10.96
Merged-chr13-100848853-3	chr13	100848758	100848958	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15431.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	22.21	15.09	5.7	9.25	18.82	24.77	16.61	18.28	46.03	33.14	43.72	21.62
Merged-chr9-62913704-4	chr9	62913636	62913836	+	928.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 6 of 13)	MIRc|SINE|MIR	-51712.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	11.71	9.81	7.42	22.93	17.59	12.86	10.3	16.26	12.39	9.54	14.07	10.65
Merged-chr8-115585809-3	chr8	115585714	115585914	+	928.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121080.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	27.46	14.59	9.13	6.44	31.5	35.43	23.25	20.07	14.95	21.59	9.04	8.77
Merged-chr4-74305901-3	chr4	74305796	74305996	+	928.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 4 of 20)	URR1B|DNA|hAT-Charlie	54017.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	12.92	16.85	22.25	7.64	33.96	33.87	30.23	32.94	24.0	26.11	31.15	20.05
Merged-chr1-12983348-3	chr1	12983243	12983443	+	928.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172841, intron 1 of 8)	intron (NM_172841, intron 1 of 8)	7792.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	9.29	13.83	26.24	21.72	14.32	14.42	25.58	25.21	21.83	17.57	18.09	11.59
Merged-chr4-114973410-3	chr4	114973355	114973555	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	13773.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	11.31	10.56	20.54	16.09	9.0	7.84	6.64	10.93	16.13	27.11	16.58	13.78
Merged-chr11-58096319-3	chr11	58096212	58096412	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7658.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	22.61	19.12	38.22	16.89	17.18	29.48	13.95	19.85	12.59	13.56	12.06	9.08
Merged-chr10-51527084-4	chr10	51526952	51527152	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	36154.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	8.08	12.58	10.27	8.45	9.0	31.04	12.62	9.45	17.31	39.16	18.59	14.1
Merged-chr1-152774764-3	chr1	152774672	152774872	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026369, exon 4 of 4)	3' UTR (NM_026369, exon 4 of 4)	8230.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	8.88	6.54	19.4	18.1	10.64	26.97	19.93	13.12	14.55	17.07	22.11	13.78
Merged-chr11-76562326-2	chr11	76562210	76562410	+	928.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	9074.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.65	5.28	3.42	12.07	17.18	13.48	17.27	11.16	13.37	17.07	6.03	8.77
Merged-chr10-80807433-3	chr10	80807312	80807512	+	928.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007445, exon 5 of 5)	exon (NM_007445, exon 5 of 5)	2164.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	8.08	11.82	13.69	11.66	13.09	13.8	6.98	16.68	14.16	15.57	19.6	10.65
Merged-chr9-44920949-7	chr9	44920835	44921035	+	928.119019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013795)	promoter-TSS (NM_013795)	-193.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	17.77	16.1	12.55	9.65	9.41	20.07	15.28	12.36	19.08	14.06	13.06	16.29
Merged-chr7-80069518-5	chr7	80069427	80069627	+	928.116699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045695, exon 2 of 3)	non-coding (NR_045695, exon 2 of 3)	5730.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	10.5	5.79	3.42	6.03	7.77	19.76	8.97	5.33	10.62	5.52	3.52	5.33
Merged-chr8-126588819-3	chr8	126588724	126588924	+	928.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4612.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	15.75	11.57	13.69	13.67	6.95	21.32	15.61	11.44	16.72	10.04	13.57	7.21
Merged-chr12-102691235-3	chr12	102691145	102691345	+	928.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-6225.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	18.57	17.86	21.11	21.32	12.27	10.98	11.63	15.0	11.6	13.56	16.58	16.29
Merged-chr12-91776496-3	chr12	91776404	91776604	+	928.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	9932.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	11.31	8.3	29.09	20.11	21.27	32.93	35.87	44.78	37.17	28.12	46.73	29.76
Merged-chr11-58978095-3	chr11	58978012	58978212	+	928.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	19.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	24.23	11.32	22.25	22.93	26.59	15.37	15.61	25.6	8.06	17.07	2.01	13.16
Merged-chr14-8214860-3	chr14	8214764	8214964	+	928.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305936, exon 1 of 3)	5' UTR (NM_001305936, exon 1 of 3)	362.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	16.96	16.85	17.11	8.85	16.77	20.38	16.94	33.31	30.68	32.64	20.1	8.77
Merged-chr3-52017927-3	chr3	52017836	52018036	+	928.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	87070.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	22.61	36.47	20.54	6.84	25.36	58.95	17.94	8.05	38.35	48.2	38.19	10.65
Merged-chr3-84228693-3	chr3	84228601	84228801	+	928.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7824.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	19.38	9.31	11.41	9.65	16.77	13.48	9.3	23.8	18.88	22.59	24.12	8.46
Merged-chr9-21926939-3	chr9	21926834	21927034	+	928.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	354.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	9.69	15.09	23.39	17.7	20.46	31.36	15.94	29.72	24.59	17.57	22.61	9.71
Merged-chr5-138195686-3	chr5	138195578	138195778	+	928.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177878)	TTS (NM_177878)	1364.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	15.34	9.56	13.12	19.71	21.68	21.01	19.27	14.69	17.51	13.56	26.13	13.47
Merged-chr4-9642218-3	chr4	9642116	9642316	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1501.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	12.92	12.83	16.54	10.86	21.27	31.67	7.31	20.97	45.63	44.19	64.82	17.23
Merged-chr3-8246427-3	chr3	8246318	8246518	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	216680.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	21.8	20.88	16.54	11.66	28.64	16.31	26.91	9.42	12.78	9.54	13.57	26.0
Merged-chr7-16255594-3	chr7	16255510	16255710	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	B3A|SINE|B2	3728.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	16.56	14.09	17.11	6.84	17.59	16.62	22.59	18.98	18.49	11.55	19.09	12.84
Merged-chr4-89486125-2	chr4	89486016	89486216	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175084.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.04	6.54	5.7	11.66	12.27	27.59	24.58	43.51	16.13	11.55	22.11	15.98
Merged-chr11-54758185-3	chr11	54758082	54758282	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	MER57C2|LTR|ERV1	29521.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	14.54	5.53	12.55	9.65	11.86	14.42	13.62	11.19	16.13	24.1	17.59	13.47
Merged-chr17-50025873-1	chr17	50025773	50025973	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 7 of 9)	ORR1G|LTR|ERVL-MaLR	164624.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.02	4.28	3.42	4.83	9.82	4.39	4.98	8.33	9.24	7.03	4.02	2.82
Merged-chr14-52307445-3	chr14	52307346	52307546	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2322.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	27.86	30.43	14.26	7.64	26.18	47.66	16.94	13.6	33.04	34.14	28.14	15.98
Merged-chr10-19522410-1	chr10	19522310	19522510	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27767.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	3.23	4.02	3.42	5.23	7.77	15.05	12.62	12.9	7.87	1.0	7.54	9.4
Merged-chr3-19460840-2	chr3	19460742	19460942	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47753.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	8.08	11.57	17.68	17.29	6.55	2.51	17.27	23.38	1.57	1.0	3.52	0.94
Merged-chrX-159835460-1	chrX	159835360	159835560	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 5 of 16)	MIR|SINE|MIR	-5008.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	6.06	3.52	4.56	3.22	4.09	0.0	0.0	0.98	14.75	19.08	11.56	17.23
Merged-chr12-3237913-1	chr12	3237813	3238013	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 3 of 6)	intron (NR_015551, intron 3 of 6)	2122.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	3.63	4.02	5.7	3.62	8.18	7.21	3.65	2.94	14.75	14.06	10.55	3.45
Merged-chr9-40785933-1	chr9	40785833	40786033	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15340.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.85	2.52	5.7	0.8	7.36	1.57	2.99	2.13	12.19	5.52	15.58	4.7
Merged-chr9-61514636-1	chr9	61514536	61514736	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	142270.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	7.67	4.53	9.7	7.24	10.64	3.76	2.33	9.0	9.64	2.01	1.0	3.76
Merged-chr10-80668757-1	chr10	80668657	80668857	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021462, intron 10 of 13)	intron (NM_021462, intron 10 of 13)	7536.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.83	10.06	2.28	0.0	1.23	4.08	0.0	0.42	14.95	10.04	3.52	2.19
Merged-chr3-126436348-2	chr3	126436281	126436481	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	72529.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	1.62	1.01	1.71	2.41	10.23	1.88	6.31	12.06	21.24	10.54	30.15	11.59
Merged-chr5-90906703-2	chr5	90906587	90906787	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009140)	TTS (NM_009140)	2788.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	10.09	14.09	4.56	1.61	3.27	18.19	8.97	2.94	17.11	13.05	6.53	2.82
Merged-chr11-80163654-1	chr11	80163554	80163754	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9492.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	2.42	6.54	5.7	4.83	3.68	4.08	6.64	6.11	8.65	10.04	6.53	2.51
Merged-chr17-71616759-3	chr17	71616649	71616849	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175639, intron 1 of 17)	CpG	534.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	9.29	18.86	9.13	11.66	14.32	17.87	19.6	17.72	16.92	29.62	18.59	22.24
Merged-chr18-60797159-1	chr18	60797059	60797259	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6690.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.81	2.01	0.57	1.21	1.23	0.0	0.66	0.0	26.36	9.04	17.08	16.92
Merged-chr12-4162968-1	chr12	4162868	4163068	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	28815.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.81	2.77	0.0	5.63	2.86	0.63	4.32	5.38	2.36	1.51	1.0	2.82
Merged-chr11-60726856-2	chr11	60726766	60726966	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022009, intron 1 of 29)	CpG	397.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	8.88	10.82	5.7	9.25	16.36	14.74	13.29	16.37	12.39	9.54	20.1	10.34
Merged-chr1-58797538-3	chr1	58797429	58797629	+	927.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009812, intron 1 of 8)	intron (NM_009812, intron 1 of 8)	2155.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	11.71	9.31	9.7	14.08	36.82	23.52	21.26	20.24	14.95	14.56	16.58	13.16
Merged-chr10-57786074-3	chr10	57785943	57786143	+	927.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	1120.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.67	5.53	7.42	14.88	25.36	40.76	20.93	30.2	9.64	20.08	31.66	7.52
Merged-chr5-124531188-5	chr5	124531028	124531228	+	927.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021430, exon 1 of 7)	5' UTR (NM_021430, exon 1 of 7)	263.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	12.11	8.3	5.7	5.63	5.73	7.84	7.31	8.72	9.24	21.09	5.53	11.28
Merged-chr12-119238648-4	chr12	119238534	119238734	+	927.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177290)	promoter-TSS (NM_177290)	-358.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	3.23	7.04	3.99	7.64	6.14	6.27	9.63	7.65	13.37	12.55	12.06	6.58
Merged-chr10-52418761-3	chr10	52418776	52418976	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	1329.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	7.67	3.52	5.7	4.83	3.68	5.33	13.95	6.03	7.87	9.54	7.03	5.95
Merged-chr17-73927222-3	chr17	73927122	73927322	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	22974.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	15.34	11.82	19.4	18.5	13.91	7.53	16.28	25.12	14.36	4.02	19.09	8.46
Merged-chr14-25487196-3	chr14	25487099	25487299	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	28014.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	14.54	8.3	14.26	12.47	15.55	22.89	11.96	19.01	14.75	20.59	16.08	12.22
Merged-chr16-95945596-3	chr16	95945491	95945691	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16514.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	7.67	13.33	12.55	14.08	20.46	13.8	11.63	22.68	24.98	21.09	24.62	21.3
Merged-chr18-69400806-3	chr18	69400717	69400917	+	927.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54657.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	14.54	14.34	18.25	12.07	26.18	42.02	11.29	27.76	33.83	30.63	39.19	20.36
Merged-chr10-80321159-3	chr10	80321090	80321290	+	927.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-642.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	5.65	11.32	21.11	3.62	13.5	10.03	8.64	6.45	13.77	7.03	13.57	8.14
Merged-chr5-99242622-3	chr5	99242542	99242742	+	927.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10285.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	27.05	21.88	12.55	10.46	18.41	50.8	34.88	25.54	39.93	35.65	25.63	15.98
Merged-chr2-160237929-3	chr2	160237831	160238031	+	927.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	89563.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	13.73	11.57	14.83	16.09	18.0	18.5	21.26	26.64	13.96	11.55	29.65	11.9
Merged-chr9-74935443-2	chr9	74935328	74935528	+	927.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17452.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.04	4.78	5.13	3.22	5.32	8.15	5.65	15.45	15.74	4.52	20.1	10.96
Merged-chr11-114909167-2	chr11	114909063	114909263	+	927.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19122.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.25	6.54	9.13	4.83	11.45	11.6	6.98	14.66	16.13	22.59	20.6	13.16
Merged-chr1-152809102-3	chr1	152809019	152809219	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	RSINE1|SINE|B4	8966.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	16.15	15.34	15.4	11.26	18.82	24.46	8.97	22.91	27.93	29.12	39.19	27.25
Merged-chr15-58046776-3	chr15	58046656	58046856	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001042438)	TTS (NM_001042438)	-12462.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	14.54	10.56	15.97	8.85	22.91	24.46	15.61	22.88	31.08	26.61	36.18	20.36
Merged-chr15-84986757-3	chr15	84986665	84986865	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	1206.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	10.5	6.79	11.98	4.42	11.86	11.92	4.65	12.39	22.23	18.58	19.09	12.84
Merged-chr10-80665149-3	chr10	80665045	80665245	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021462)	TTS (NM_021462)	-8074.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	16.15	34.46	2.28	6.03	12.68	30.73	3.32	7.74	18.88	27.62	6.53	4.07
Merged-chr15-67788283-1	chr15	67788183	67788383	+	927.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	470573.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	1.01	0.0	0.0	12.68	20.07	8.97	9.81	1.38	0.5	1.0	0.0
Merged-chr7-98082617-3	chr7	98082521	98082721	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 18 of 48)	intron (NM_008663, intron 18 of 48)	26627.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	12.52	7.8	14.83	14.48	13.91	18.81	14.28	11.72	10.82	4.52	15.07	10.65
Merged-chr5-125440753-3	chr5	125440645	125440845	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-823.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	23.42	12.32	14.83	17.7	8.59	16.93	9.97	15.73	16.92	12.05	22.61	11.28
Merged-chr1-132133644-3	chr1	132133528	132133728	+	927.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008795, intron 1 of 15)	L2|LINE|L2	6057.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	7.67	15.34	14.83	13.27	22.09	24.77	12.62	23.94	10.03	17.57	15.07	19.11
Merged-chr3-87334850-3	chr3	87334745	87334945	+	927.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23036.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	19.38	10.56	19.97	30.97	43.36	48.29	35.87	59.66	19.87	17.57	11.05	12.53
Merged-chr15-98153101-2	chr15	98152996	98153196	+	927.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-7394.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	12.92	3.77	12.55	2.82	16.36	11.6	11.96	7.26	11.21	3.51	16.58	4.7
Merged-chr7-127091763-1	chr7	127091663	127091863	+	927.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178901, intron 1 of 1)	intron (NM_178901, intron 1 of 1)	327.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.81	0.75	9.13	0.0	6.55	12.86	12.29	13.37	1.77	0.5	4.52	3.13
Merged-chr13-44416167-1	chr13	44416067	44416267	+	927.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23560.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.63	4.28	3.42	6.84	13.91	11.29	5.31	11.19	6.29	8.03	6.03	6.27
Merged-chr19-40587190-3	chr19	40587091	40587291	+	927.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153554, intron 1 of 18)	intron (NM_153554, intron 1 of 18)	1272.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	8.48	10.56	17.68	20.51	11.05	18.81	18.6	25.21	26.75	15.57	40.2	27.25
Merged-chr2-27699691-3	chr2	27699553	27699753	+	927.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-9639.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	23.42	17.36	13.12	22.12	27.82	8.47	17.94	23.16	16.52	10.54	33.67	7.21
Merged-chr14-22813501-3	chr14	22813400	22813600	+	927.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-270702.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	12.52	9.56	19.97	19.31	17.18	24.15	23.92	26.61	20.06	24.6	31.66	13.78
Merged-chr8-83572605-2	chr8	83572506	83572706	+	927.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025843)	TTS (NM_025843)	5848.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	12.92	9.56	18.25	4.83	15.96	11.6	5.31	10.57	2.75	5.02	2.01	1.25
Merged-chr11-115279942-2	chr11	115279845	115280045	+	927.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2976.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	21.0	13.83	17.11	9.65	0.0	1.25	0.66	0.0	28.32	16.57	35.68	17.54
Merged-chr7-43660882-3	chr7	43660788	43660988	+	927.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	-727.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	12.92	12.07	13.69	4.02	21.68	9.41	5.65	12.17	15.54	23.1	20.1	10.02
Merged-chr9-35546922-3	chr9	35546819	35547019	+	927.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013932, exon 9 of 12)	exon (NM_013932, exon 9 of 12)	11551.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	16.56	14.34	10.84	30.16	13.5	14.42	13.95	30.48	12.19	16.07	25.63	15.66
Merged-chr2-3327547-3	chr2	3327446	3327646	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290370, exon 12 of 12)	3' UTR (NM_001290370, exon 12 of 12)	5082.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	17.77	28.67	15.97	29.76	25.36	47.66	14.28	47.47	46.81	30.13	63.82	32.58
Merged-chr3-152568858-1	chr3	152568758	152568958	+	927.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-98055.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	2.01	0.0	3.62	13.5	7.21	9.63	13.32	2.75	6.53	7.03	4.07
Merged-chr4-126967916-1	chr4	126967816	126968016	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	7.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	16.15	10.31	12.55	6.84	9.0	9.72	7.31	6.03	13.77	12.55	12.56	8.14
Merged-chr19-11807443-1	chr19	11807343	11807543	+	927.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	11960.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.85	5.53	19.4	5.63	14.73	10.35	13.29	10.96	4.92	4.52	15.07	8.14
Merged-chr18-61083221-3	chr18	61083164	61083364	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146268, exon 23 of 23)	exon (NM_001146268, exon 23 of 23)	-22308.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	10.9	14.09	13.12	6.44	13.5	16.31	13.62	9.73	29.5	23.1	19.09	11.28
Merged-chr12-69503823-3	chr12	69503725	69503925	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28275.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.86	13.83	10.84	5.63	19.23	37.94	15.61	11.89	24.59	26.61	23.62	13.16
Merged-chr5-122547487-3	chr5	122547400	122547600	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45275.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	19.38	18.36	15.97	14.08	19.23	13.48	16.94	16.09	8.85	12.05	4.52	15.35
Merged-chr6-42692281-3	chr6	42692222	42692422	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355769, intron 1 of 8)	intron (NM_001355769, intron 1 of 8)	778.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	16.56	7.04	9.13	12.87	22.91	22.26	30.89	41.44	18.69	15.57	21.1	12.84
Merged-chr12-100024098-1	chr12	100023998	100024198	+	927.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	59599.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.04	5.03	6.28	5.23	11.86	4.08	6.64	16.01	1.77	3.51	2.51	2.19
Merged-chr12-117586294-3	chr12	117586205	117586405	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 7 of 27)	intron (NM_175930, intron 7 of 27)	69826.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	16.15	13.58	15.4	19.31	18.41	17.87	11.29	25.91	23.41	28.62	34.67	11.28
Merged-chr13-4940051-3	chr13	4939946	4940146	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-330882.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	11.31	5.79	15.97	8.85	17.18	14.11	14.62	23.83	31.27	38.66	33.16	13.16
Merged-chr11-120948506-3	chr11	120948415	120948615	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	31.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	31.09	14.34	10.27	18.1	11.45	21.32	11.63	12.48	19.08	12.05	19.6	17.23
Merged-chr15-9118769-2	chr15	9118673	9118873	+	927.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 7 of 9)	L2|LINE|L2	21681.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	2.01	3.42	1.21	18.82	9.09	21.59	31.51	11.6	5.02	7.03	11.28
Merged-chr13-42103760-3	chr13	42103665	42103865	+	927.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51744.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	16.56	10.06	17.11	10.46	12.68	18.5	10.96	6.98	10.82	14.06	7.03	17.54
Merged-chr7-75610018-3	chr7	75609910	75610110	+	927.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154476.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	15.34	8.3	17.11	14.08	24.55	15.05	14.95	21.45	13.57	12.05	15.07	16.6
Merged-chr12-33176176-3	chr12	33176081	33176281	+	927.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	28495.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.88	9.31	17.11	10.46	13.91	15.37	12.62	14.47	22.03	17.07	18.09	19.11
Merged-chr16-76399862-2	chr16	76399752	76399952	+	927.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26025.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.4	1.26	2.28	0.0	6.95	25.09	9.97	12.53	30.29	18.08	29.14	10.96
Merged-chr13-3478164-2	chr13	3478064	3478264	+	927.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015522)	promoter-TSS (NR_015522)	-139.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	2.42	3.77	5.7	2.82	12.27	13.8	15.61	13.6	16.72	14.56	29.65	18.17
Merged-chr3-95655775-3	chr3	95655713	95655913	+	927.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2908.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	11.31	10.56	17.68	22.93	13.91	10.66	5.98	15.7	19.08	19.08	29.65	21.62
Merged-chr5-112298375-3	chr5	112298309	112298509	+	927.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	21718.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	11.31	8.55	22.25	24.53	20.86	8.78	11.63	21.42	14.95	6.53	15.58	18.17
Merged-chr5-100500012-3	chr5	100499913	100500113	+	927.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359914, intron 1 of 13)	CpG	626.0	NM_172714	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	16.15	16.1	6.85	8.85	7.36	16.31	13.95	12.93	20.06	25.11	14.07	13.16
Merged-chr5-34501030-3	chr5	34500938	34501138	+	927.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12941.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	14.13	9.06	18.83	12.47	18.0	21.01	18.93	17.72	15.34	5.02	42.21	16.29
Merged-chr3-85571474-3	chr3	85571386	85571586	+	927.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2643.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	13.33	11.07	23.96	7.64	13.5	10.98	13.62	15.39	16.92	15.57	18.59	10.96
Merged-chr2-180272967-1	chr2	180272867	180273067	+	927.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	498.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	6.86	11.82	4.56	4.42	7.36	5.96	7.31	7.79	7.28	5.52	12.56	1.25
Merged-chr13-104794638-3	chr13	104794542	104794742	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360094, intron 9 of 13)	intron (NM_001360094, intron 9 of 13)	22311.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	11.31	9.06	14.83	20.91	9.41	12.86	8.64	22.4	11.41	5.02	23.62	11.9
Merged-chr3-18245359-3	chr3	18245258	18245458	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-2020.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	12.11	12.07	10.84	4.42	16.36	13.8	4.65	9.2	15.93	20.08	21.1	10.34
Merged-chr2-150922336-3	chr2	150922249	150922449	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 4 of 6)	Lx9|LINE|L1	12755.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	14.54	10.31	10.84	13.27	20.46	15.68	14.28	18.87	12.19	28.62	22.61	11.28
Merged-chr5-97087486-3	chr5	97087351	97087551	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080708, exon 16 of 16)	exon (NM_080708, exon 16 of 16)	24145.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	3.23	13.08	15.97	15.69	6.95	6.59	4.98	12.7	12.39	4.52	12.06	7.21
Merged-chr6-87809827-2	chr6	87809740	87809940	+	927.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-83.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	30.69	13.58	11.41	20.91	10.64	16.62	7.97	12.36	17.9	13.56	20.1	15.35
Merged-chr9-13563675-3	chr9	13563577	13563777	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56312.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	15.34	22.13	6.85	3.22	20.46	27.91	11.29	5.27	13.57	20.59	12.56	2.51
Merged-chr6-17675510-3	chr6	17675371	17675571	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18523.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	18.17	9.06	10.27	14.08	12.27	17.25	12.95	19.79	18.69	15.06	15.07	10.34
Merged-chr10-77974545-3	chr10	77974451	77974651	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4099.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	21.8	20.37	22.25	12.07	18.82	18.81	8.3	18.95	17.7	18.08	27.13	10.02
Merged-chr17-5841385-7	chr17	5841257	5841457	+	927.488098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025664)	promoter-TSS (NM_025664)	-23.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	28.67	32.45	32.52	17.29	28.23	26.65	27.57	31.01	34.62	38.66	29.65	10.02
Merged-chr4-134728990-3	chr4	134728885	134729085	+	927.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24695.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	12.52	8.8	22.82	17.7	13.91	15.68	11.63	21.87	15.14	7.03	14.57	20.36
Merged-chr3-97929662-3	chr3	97929573	97929773	+	927.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033779)	promoter-TSS (NM_001033779)	-500.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	13.73	10.31	37.08	11.66	12.68	15.05	29.56	25.21	17.7	10.04	27.13	10.34
Merged-chr11-75566680-3	chr11	75566555	75566755	+	927.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	15226.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	17.36	7.29	20.54	13.67	34.36	21.95	30.56	47.58	19.87	20.08	14.07	13.16
Merged-chr19-12007792-3	chr19	12007600	12007800	+	927.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	29040.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.46	13.33	9.13	14.08	5.73	8.15	5.65	9.53	17.11	14.56	14.07	10.34
Merged-chr8-56305382-3	chr8	56305315	56305515	+	927.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	Lx7|LINE|L1	10863.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	14.94	4.78	15.4	8.85	15.14	9.41	6.31	21.93	22.82	18.08	9.55	7.52
Merged-chr2-32689572-3	chr2	32689476	32689676	+	927.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010236, intron 4 of 14)	intron (NM_010236, intron 4 of 14)	-1810.0	NR_106168	102465885.0		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	12.11	16.35	8.56	17.7	22.91	16.62	8.3	16.49	35.01	14.06	21.1	17.86
Merged-chr2-52296958-2	chr2	52296843	52297043	+	927.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	5941.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	4.85	1.01	2.85	2.41	12.68	11.29	17.27	11.36	18.88	13.05	18.09	11.59
Merged-chr7-16299808-2	chr7	16299720	16299920	+	927.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9763.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	22.61	4.78	5.13	10.86	7.77	12.23	9.3	15.03	27.93	25.61	41.2	19.74
Merged-chr12-85483300-3	chr12	85483178	85483378	+	927.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9388.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	11.31	11.82	6.85	8.04	24.96	16.93	7.97	10.43	11.8	14.56	15.07	6.89
Merged-chr9-44510221-2	chr9	44510069	44510269	+	927.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030256, exon 9 of 9)	3' UTR (NM_030256, exon 9 of 9)	11033.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.85	5.03	5.13	5.23	6.95	7.84	4.32	5.21	4.92	14.06	5.53	3.76
Merged-chr13-92861611-1	chr13	92861511	92861711	+	927.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16824.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	2.83	6.04	2.28	1.61	0.0	6.59	1.33	1.09	15.93	15.06	15.07	4.07
Merged-chr19-53406030-3	chr19	53405955	53406155	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15421.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	28.27	28.67	17.11	12.07	23.73	30.1	22.92	13.46	10.82	12.05	9.55	1.88
Merged-chr4-133907277-3	chr4	133907182	133907382	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19485.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	12.52	12.58	28.52	4.42	15.14	17.25	19.27	13.82	17.7	7.03	15.07	9.08
Merged-chr10-91080721-3	chr10	91080633	91080833	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042558, intron 1 of 26)	intron (NM_001042558, intron 1 of 26)	2010.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	9.29	11.32	14.26	4.83	13.5	28.22	14.95	13.46	40.32	26.11	29.14	8.46
Merged-chr13-98946738-3	chr13	98946647	98946847	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20363.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	15.34	9.31	11.98	8.45	19.23	23.52	23.58	22.85	17.11	22.09	22.61	15.04
Merged-chr5-43181674-3	chr5	43181574	43181774	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51789.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	18.17	8.3	16.54	30.57	17.18	9.41	21.92	23.5	35.4	23.6	30.65	14.41
Merged-chr6-53986433-1	chr6	53986333	53986533	+	927.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	7742.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	0.4	0.0	0.0	0.8	0.41	0.63	0.66	0.7	13.18	13.05	18.09	16.92
Merged-chr16-38433034-4	chr16	38432858	38433058	+	927.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134102, exon 1 of 11)	5' UTR (NM_134102, exon 1 of 11)	187.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	11.31	3.52	1.71	9.65	13.5	11.29	14.95	13.23	14.16	11.05	16.58	12.22
Merged-chr8-117267601-3	chr8	117267500	117267700	+	927.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	10581.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	10.9	6.79	13.12	9.25	17.59	20.07	20.26	17.94	18.88	26.11	49.24	17.23
Merged-chr11-78032217-3	chr11	78032133	78032333	+	927.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-80.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	21.0	21.88	11.98	23.33	27.41	25.4	10.63	22.79	23.41	20.08	29.14	6.89
Merged-chr13-65019016-3	chr13	65018914	65019114	+	927.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14044.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	18.57	7.55	14.26	25.34	12.68	11.29	13.62	20.19	16.52	6.03	16.58	4.7
Merged-chr10-93432655-3	chr10	93432592	93432792	+	927.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106161)	promoter-TSS (NR_106161)	-415.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	11.31	8.8	7.99	18.9	13.09	11.92	18.27	21.81	15.34	16.07	16.08	8.77
Merged-chr16-38467568-3	chr16	38467473	38467673	+	927.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	8640.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	33.11	25.15	17.68	4.42	9.0	46.72	19.6	11.92	35.01	20.08	21.1	10.02
Merged-chr2-153649693-3	chr2	153649630	153649830	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010068, exon 1 of 21)	5' UTR (NM_010068, exon 1 of 21)	281.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	21.4	16.6	8.56	16.89	13.91	17.56	22.59	10.46	8.65	9.04	11.56	14.1
Merged-chr4-49567821-3	chr4	49567714	49567914	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18268.0	NM_144903	230163.0	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	10.9	12.07	17.68	21.32	22.5	16.62	9.3	19.15	31.47	19.58	31.15	10.65
Merged-chr18-58567290-3	chr18	58567180	58567380	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11040.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	14.54	14.09	22.82	7.64	7.77	21.95	15.61	14.66	17.9	20.08	20.1	5.33
Merged-chr3-9573818-3	chr3	9573718	9573918	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	36267.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	9.69	10.31	31.95	18.5	15.96	15.37	18.6	25.85	16.33	6.53	16.08	11.59
Merged-chr1-182928635-3	chr1	182928489	182928689	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26199.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	8.48	16.35	12.55	17.29	7.36	9.09	24.58	9.98	11.6	7.53	19.6	14.1
Merged-chr18-68096733-3	chr18	68096634	68096834	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	-131212.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	15.34	18.36	15.97	16.09	22.09	17.87	19.27	16.12	14.36	13.05	32.16	5.64
Merged-chr2-163703151-3	chr2	163703058	163703258	+	927.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	9121.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	20.19	11.07	23.39	20.51	26.59	19.44	9.97	23.92	29.11	29.62	23.11	6.89
Merged-chr14-61744096-2	chr14	61743986	61744186	+	927.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61713.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	18.98	9.06	9.7	10.46	19.64	22.89	14.62	17.1	4.52	7.03	10.05	2.19
Merged-chr1-172191699-3	chr1	172191585	172191785	+	927.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151641, intron 11 of 13)	intron (NR_151641, intron 11 of 13)	15119.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	12.92	4.28	21.68	14.08	11.86	8.15	18.27	24.95	15.93	6.03	15.58	7.21
Merged-chrX-73918875-3	chrX	73918769	73918969	+	927.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019870, intron 6 of 7)	intron (NM_019870, intron 6 of 7)	3075.0	NM_001310538	56292.0	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	14.94	8.3	35.94	22.93	20.86	14.11	26.91	33.03	16.33	19.58	46.73	14.41
Merged-chr4-46580893-1	chr4	46580793	46580993	+	927.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	MMTV-int|LTR|ERVK	-14453.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.25	0.57	0.0	0.0	0.0	0.0	0.0	23.41	35.65	25.12	11.28
Merged-chr18-34247127-3	chr18	34247053	34247253	+	927.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-541.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	14.54	9.56	21.11	22.93	9.41	17.25	14.62	15.22	16.33	28.62	19.6	13.16
Merged-chr1-172377257-2	chr1	172377135	172377335	+	927.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026234, exon 1 of 1)	exon (NM_026234, exon 1 of 1)	704.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	6.86	7.04	5.7	6.03	15.14	6.59	12.29	12.53	10.82	11.05	11.56	12.84
Merged-chr15-38382703-3	chr15	38382567	38382767	+	927.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie15a|DNA|hAT-Charlie	-81956.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.85	12.58	13.12	17.29	9.82	18.5	13.95	18.39	17.11	9.54	13.06	14.41
Merged-chr11-101627891-3	chr11	101627764	101627964	+	927.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-85.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	21.4	21.13	15.4	14.08	13.91	17.25	5.31	5.41	13.18	16.07	6.53	10.02
Merged-chr8-125282698-3	chr8	125282605	125282805	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210128.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	7.67	10.82	12.55	11.66	21.27	23.52	27.9	26.89	16.92	15.57	21.1	14.1
Merged-chrX-168639876-3	chrX	168639790	168639990	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34012.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	6.06	6.54	14.26	10.46	14.32	13.8	4.32	25.91	25.96	11.05	19.09	13.47
Merged-chr19-45581470-3	chr19	45581355	45581555	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	20870.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	19.79	9.81	15.97	19.31	11.05	10.03	5.65	8.19	20.65	11.55	17.59	12.22
Merged-chr14-17885462-3	chr14	17885248	17885448	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-96296.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.06	0.75	2.28	0.4	3.27	2.82	0.33	2.92	3.34	3.51	2.51	2.51
Merged-chr5-134531840-3	chr5	134531748	134531948	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	20586.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	11.31	4.78	18.25	15.28	11.05	15.37	10.96	15.95	14.75	16.07	16.08	14.72
Merged-chr6-86572558-2	chr6	86572453	86572653	+	927.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45152.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	8.48	6.54	5.7	1.61	20.86	30.42	12.62	9.62	22.82	28.62	15.58	9.71
Merged-chr16-10990094-3	chr16	10990003	10990203	+	927.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	3018.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	10.5	17.36	14.83	11.66	24.96	21.64	9.3	13.23	26.75	17.57	25.63	20.05
Merged-chr2-173534769-2	chr2	173534677	173534877	+	927.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12185.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.0	0.5	1.14	2.01	12.27	12.54	8.64	12.62	17.31	15.57	22.61	9.71
Merged-chr17-13905790-2	chr17	13905691	13905891	+	927.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010806)	TTS (NM_010806)	-42582.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	9.29	4.02	3.99	17.7	18.82	11.6	20.93	33.11	13.77	15.06	10.05	15.35
Merged-chr13-94173904-2	chr13	94173772	94173972	+	927.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	111409.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	9.69	3.27	12.55	18.9	16.36	20.38	7.97	20.5	6.1	8.54	7.03	5.33
Merged-chr2-166553669-2	chr2	166553571	166553771	+	927.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10851.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	12.11	6.79	7.99	7.24	9.82	13.8	7.97	9.06	15.54	10.04	23.62	9.71
Merged-chr6-138095284-3	chr6	138095176	138095376	+	927.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15360.0	NM_177787	277898.0	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	14.13	15.09	11.98	28.56	14.73	7.84	7.64	20.72	19.67	8.54	21.1	31.95
Merged-chr12-54655636-3	chr12	54655522	54655722	+	927.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134054, intron 1 of 1)	intron (NM_134054, intron 1 of 1)	950.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	14.13	5.53	23.39	6.84	22.91	22.58	20.26	31.18	10.62	17.07	14.57	15.66
Merged-chr6-66849107-3	chr6	66848996	66849196	+	927.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43764.0	NM_001166720	546903.0	Mm.484975	NM_001166720	ENSMUSG00000093755	Vmn1r39	EG546903|Gm5993	vomeronasal 1 receptor 39	protein-coding	12.92	20.12	5.13	2.82	11.86	21.32	14.95	4.99	28.91	24.1	17.59	9.71
Merged-chr16-49876324-3	chr16	49876211	49876411	+	927.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 3 of 9)	intron (NM_010581, intron 3 of 9)	20657.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	15.34	5.03	16.54	12.07	13.5	13.17	6.64	14.86	22.62	14.56	21.1	18.48
Merged-chr8-90834219-3	chr8	90834194	90834394	+	927.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	5459.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.86	5.28	6.85	4.83	5.73	10.66	3.99	6.45	10.62	8.54	11.56	8.77
Merged-chr2-22965616-3	chr2	22965511	22965711	+	927.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 3 of 10)	intron (NM_001077190, intron 3 of 10)	70089.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	17.77	9.31	13.12	24.53	22.5	14.74	14.62	29.78	23.6	12.05	18.09	21.3
Merged-chr6-8032157-1	chr6	8032057	8032257	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	160460.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	23.02	15.85	14.26	24.94	2.45	1.25	1.33	3.93	0.2	0.5	0.0	0.31
Merged-chr4-129019055-3	chr4	129018946	129019146	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25822.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	12.52	24.65	33.09	9.65	15.96	36.37	15.94	11.41	23.21	22.09	29.65	12.84
Merged-chr12-24789856-1	chr12	24789756	24789956	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-41743.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	2.83	1.51	2.85	2.82	11.05	2.82	3.32	9.45	2.16	4.52	0.0	0.94
Merged-chr9-47893161-1	chr9	47893061	47893261	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-74953.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.81	1.51	5.13	0.8	5.73	2.51	10.96	7.51	0.39	0.0	1.51	0.0
Merged-chr12-34714384-1	chr12	34714284	34714484	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-185495.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.85	3.27	9.7	6.03	9.82	11.6	3.32	9.39	4.92	1.0	9.04	6.89
Merged-chr4-149890100-1	chr4	149890000	149890200	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64906.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.23	5.28	6.28	2.41	3.68	5.33	5.31	6.48	6.49	12.55	6.53	3.13
Merged-chr1-131436821-1	chr1	131436721	131436921	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081011, exon 3 of 23)	exon (NM_001081011, exon 3 of 23)	90540.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.81	1.51	2.28	2.41	4.91	2.51	7.64	8.92	1.97	5.02	4.52	4.7
Merged-chr17-26138745-4	chr17	26138787	26138987	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009733, exon 1 of 11)	5' UTR (NM_009733, exon 1 of 11)	201.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	18.17	17.61	22.25	10.86	14.32	24.15	19.93	14.8	17.9	20.08	20.1	20.68
Merged-chr10-91032671-1	chr10	91032571	91032771	+	927.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042558, intron 16 of 26)	intron (NM_001042558, intron 16 of 26)	50072.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.81	4.02	0.0	4.02	0.82	4.08	0.33	4.68	27.14	13.56	35.68	16.6
Merged-chr13-64154128-3	chr13	64154024	64154224	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-925.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	20.59	23.64	11.41	10.86	29.05	42.02	26.57	43.15	59.2	40.67	71.86	39.47
Merged-chr9-120029637-1	chr9	120029537	120029737	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6039.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	2.83	4.78	5.13	4.83	2.45	2.82	8.3	7.6	4.52	2.01	6.03	2.82
Merged-chr4-55655522-3	chr4	55655428	55655628	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123053.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.71	10.31	17.68	23.33	33.14	31.04	28.57	51.42	18.1	19.58	44.22	20.68
Merged-chr5-100583298-3	chr5	100583198	100583398	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11093.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	16.96	6.54	15.4	12.07	7.36	13.48	10.63	17.89	23.8	22.09	38.69	14.72
Merged-chr2-45554913-3	chr2	45554815	45555015	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141690.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	13.33	7.8	13.12	20.91	19.23	18.81	14.28	30.0	18.88	21.09	29.65	15.04
Merged-chr13-45031461-3	chr13	45031363	45031563	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29367.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	10.5	8.3	9.13	5.63	13.91	14.74	9.3	9.28	16.13	6.03	9.04	7.52
Merged-chr2-73548806-3	chr2	73548716	73548916	+	926.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19329.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	9.69	10.31	20.54	13.67	23.73	15.68	17.27	25.01	17.31	7.53	16.58	11.28
Merged-chr9-13443722-3	chr9	13443647	13443847	+	926.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12386.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	18.17	8.3	15.4	13.27	19.64	22.89	14.95	39.28	6.88	11.05	23.62	13.16
Merged-chr2-121414437-3	chr2	121414299	121414499	+	926.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153075)	promoter-TSS (NM_153075)	497.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	14.94	10.56	12.55	12.07	14.32	22.58	20.59	17.58	30.29	19.08	20.6	16.92
Merged-chr9-69987771-3	chr9	69987668	69987868	+	926.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1698.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	23.42	11.57	4.56	12.07	13.91	24.46	15.94	13.12	17.9	20.08	18.09	17.23
Merged-chr1-52764234-3	chr1	52764137	52764337	+	926.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36879.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	11.71	3.02	26.24	15.28	24.14	16.31	27.24	26.47	22.42	10.54	16.58	18.17
Merged-chr3-10430081-3	chr3	10429984	10430184	+	926.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127191, intron 4 of 6)	intron (NM_001127191, intron 4 of 6)	10046.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	24.23	8.3	16.54	13.27	24.96	14.74	16.28	29.94	30.09	17.57	22.61	21.62
Merged-chr16-33829639-3	chr16	33829514	33829714	+	926.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010580)	promoter-TSS (NM_010580)	-51.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.25	13.08	9.7	14.48	20.46	9.72	8.97	9.79	16.52	21.09	23.62	10.96
Merged-chr18-65376209-2	chr18	65376106	65376306	+	926.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 2 of 12)	intron (NM_001037294, intron 2 of 12)	17682.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	17.36	15.85	14.26	2.82	8.18	31.04	10.63	11.36	8.85	4.52	6.03	5.01
Merged-chr7-126941301-3	chr7	126941212	126941412	+	926.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172747, intron 2 of 5)	intron (NM_172747, intron 2 of 5)	7847.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	20.19	10.82	12.55	8.85	22.09	21.64	18.93	21.84	30.88	28.12	40.2	30.07
Merged-chr6-22363732-3	chr6	22363627	22363827	+	926.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7646.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	16.56	7.8	22.82	15.28	15.14	12.86	17.94	27.08	19.28	10.04	29.65	9.71
Merged-chrX-20345184-3	chrX	20345092	20345292	+	926.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-19289.0	NM_133669	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	13.33	19.62	17.11	15.28	13.91	18.5	9.63	9.39	20.26	25.11	8.54	8.46
Merged-chr17-28435118-3	chr17	28435018	28435218	+	926.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 3 of 10)	intron (NM_010220, intron 3 of 10)	51031.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	19.38	13.58	34.23	36.2	27.82	15.05	11.63	32.38	27.93	12.05	25.12	15.35
Merged-chr9-118651105-3	chr9	118651043	118651243	+	926.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	44434.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.65	3.27	9.7	14.48	29.05	17.25	21.92	41.75	12.39	10.04	18.09	8.14
Merged-chr6-55203786-2	chr6	55203678	55203878	+	926.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142781, intron 1 of 17)	intron (NM_001142781, intron 1 of 17)	395.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	12.92	6.04	7.42	7.64	6.95	10.98	13.29	11.89	20.06	13.56	33.67	5.33
Merged-chr6-28430924-4	chr6	28430771	28430971	+	926.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019569, intron 2 of 6)	(CTG)n|Simple_repeat|Simple_repeat	2970.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	11.71	8.55	3.99	19.71	7.36	9.72	5.98	12.36	11.21	5.02	16.58	6.27
Merged-chr1-165667594-3	chr1	165667493	165667693	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33052.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.25	4.53	13.69	11.66	19.23	4.08	16.94	16.01	16.33	9.54	25.12	8.77
Merged-chr8-56412194-3	chr8	56412095	56412295	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72773.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	12.52	10.56	7.99	17.29	11.86	18.19	16.94	24.45	23.01	15.57	24.62	4.7
Merged-chr15-50762886-3	chr15	50762788	50762988	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	126161.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.33	7.55	18.25	18.5	21.68	20.07	13.95	23.05	20.46	36.65	43.21	17.54
Merged-chr5-122379958-3	chr5	122379868	122380068	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024216, intron 3 of 7)	intron (NM_024216, intron 3 of 7)	7460.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	18.57	12.83	13.12	6.44	13.91	26.03	9.3	11.72	25.18	10.54	22.61	5.95
Merged-chr13-4767064-3	chr13	4766983	4767183	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-157919.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	15.34	6.79	3.99	12.47	41.32	20.7	21.59	25.88	28.52	28.12	32.66	24.43
Merged-chr12-29713073-1	chr12	29712973	29713173	+	926.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-26628.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	4.85	0.0	1.14	3.22	2.86	2.2	2.33	3.42	13.37	7.53	12.56	7.52
Merged-chr9-64253112-2	chr9	64253008	64253208	+	926.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	497.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	10.09	8.3	15.4	5.23	13.5	11.92	6.98	7.74	19.67	15.57	19.6	15.98
Merged-chr1-151584903-4	chr1	151584766	151584966	+	926.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13493.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	3.23	1.51	1.14	6.44	14.73	15.37	17.27	17.72	13.57	11.55	21.1	12.22
Merged-chr2-130785119-2	chr2	130785023	130785223	+	926.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 11 of 36)	intron (NM_029432, intron 11 of 36)	18978.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	8.08	10.82	5.7	8.04	20.05	17.56	11.63	18.87	17.9	20.08	23.62	10.34
Merged-chr5-117938427-3	chr5	117938366	117938566	+	926.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 21 of 27)	intron (NM_008712, intron 21 of 27)	-38304.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	15.34	10.82	6.85	7.24	27.82	21.32	2.66	15.53	12.39	10.04	12.06	9.08
Merged-chr11-47197488-3	chr11	47197384	47197584	+	926.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	181818.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	16.96	12.07	4.56	21.72	17.59	10.03	12.62	16.4	13.96	12.05	35.17	16.29
Merged-chr3-146154018-3	chr3	146153914	146154114	+	926.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	3840.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	28.67	38.99	25.1	11.26	51.96	86.23	33.55	23.94	52.32	34.14	21.61	8.14
Merged-chr10-111189319-3	chr10	111189210	111189410	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	MTC|LTR|ERVL-MaLR	24508.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	12.52	24.15	14.26	27.35	18.41	8.78	17.61	21.56	16.92	9.04	18.09	7.21
Merged-chr15-78334585-3	chr15	78334503	78334703	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	8613.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	25.04	23.39	11.41	10.86	31.09	38.88	26.91	4.18	36.39	32.13	22.61	12.53
Merged-chr17-80560952-3	chr17	80560865	80561065	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 1 of 9)	intron (NM_001360144, intron 1 of 9)	2869.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	14.54	20.63	7.99	10.86	22.91	10.98	7.31	18.53	24.78	24.1	18.59	15.04
Merged-chr18-61452451-3	chr18	61452348	61452548	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32159.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	8.08	9.56	6.85	7.24	12.68	5.96	12.95	13.63	18.69	13.56	15.58	16.29
Merged-chrX-96242791-1	chrX	96242691	96242891	+	926.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029801)	promoter-TSS (NR_029801)	-26.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	8.88	3.52	4.56	5.63	4.5	10.66	13.62	12.31	4.13	11.55	8.04	2.19
Merged-chr9-63613769-3	chr9	63613670	63613870	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11124.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	13.33	13.33	18.83	24.13	12.27	8.15	15.28	25.93	10.82	9.04	18.59	14.1
Merged-chr6-149357292-3	chr6	149357185	149357385	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	47871.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	12.11	11.32	18.25	15.28	24.55	13.48	20.93	17.5	43.66	42.68	54.77	37.28
Merged-chr1-134703700-2	chr1	134703594	134703794	+	926.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-5606.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	19.79	27.67	41.64	39.82	5.32	8.15	8.3	15.22	4.72	0.5	11.05	12.22
Merged-chr11-103389923-3	chr11	103389838	103390038	+	926.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 4 of 11)	L1M2|LINE|L1	22726.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	10.09	24.4	17.11	26.95	14.32	20.38	11.96	21.7	20.46	11.05	17.59	18.48
Merged-chr19-5017039-3	chr19	5016929	5017129	+	926.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6977.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	26.25	37.73	21.11	5.23	28.64	46.72	14.95	8.89	40.32	34.65	32.66	8.77
Merged-chr3-69202515-3	chr3	69202412	69202612	+	926.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19907.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	18.57	12.58	18.83	3.22	8.59	27.28	8.97	10.88	17.31	20.08	20.6	8.77
Merged-chr3-67512977-3	chr3	67512888	67513088	+	926.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164763, intron 1 of 5)	intron (NM_001164763, intron 1 of 5)	2535.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	18.98	10.82	14.83	14.88	15.55	18.5	11.96	20.02	23.6	13.05	29.65	15.04
Merged-chr4-43960489-3	chr4	43960411	43960611	+	926.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	B4A|SINE|B4	2809.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	13.33	15.85	13.69	16.49	13.5	17.87	7.31	8.1	17.31	20.08	28.64	16.92
Merged-chr8-47690062-2	chr8	47689959	47690159	+	926.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14900.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	6.46	11.32	2.85	4.02	13.5	20.7	12.62	8.66	17.11	21.09	19.09	6.89
Merged-chr8-39308362-2	chr8	39308268	39308468	+	926.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10388.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	10.9	13.33	15.97	21.32	17.18	19.76	15.28	20.52	0.0	0.0	1.0	0.0
Merged-chr17-34249956-3	chr17	34249867	34250067	+	926.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11062.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	26.65	26.91	30.23	6.03	18.82	37.94	9.3	5.27	32.65	17.57	24.12	17.54
Merged-chr4-105317019-3	chr4	105316914	105317114	+	926.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	159667.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	18.98	14.84	7.99	14.48	11.05	18.81	7.31	9.17	13.96	16.07	19.6	8.46
Merged-chr8-56328392-3	chr8	56328301	56328501	+	926.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33849.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	12.11	6.79	19.4	20.11	33.96	11.29	25.91	46.82	16.33	19.58	51.76	36.65
Merged-chr16-32087799-3	chr16	32087701	32087901	+	926.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8459.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	12.52	14.59	14.83	14.88	13.5	25.4	6.98	16.49	17.7	15.57	20.1	10.02
Merged-chr11-98943472-3	chr11	98943331	98943531	+	926.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3720.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	20.59	12.32	10.27	9.65	26.18	15.37	4.98	7.23	26.55	13.56	13.06	6.27
Merged-chr6-146674681-1	chr6	146674581	146674781	+	926.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	17463.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	7.67	12.32	3.99	6.84	7.36	12.54	8.3	10.77	7.28	4.02	7.54	3.76
Merged-chr14-45036784-3	chr14	45036687	45036887	+	926.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	48676.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	13.73	14.09	21.68	15.69	11.05	11.29	7.31	16.77	21.05	10.04	23.62	10.34
Merged-chr4-133390719-1	chr4	133390619	133390819	+	926.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016981, intron 1 of 11)	MIR3|SINE|MIR	20943.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	3.23	2.26	6.28	3.22	6.14	4.7	6.31	7.65	6.29	3.51	5.02	1.57
Merged-chr4-88701718-1	chr4	88701618	88701818	+	926.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10450.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	8.88	1.76	7.99	11.26	18.41	8.47	13.95	20.5	10.62	4.52	6.03	5.95
Merged-chr3-30977333-3	chr3	30977255	30977455	+	926.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7940.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	13.33	11.07	15.97	9.25	16.77	26.97	13.62	21.45	19.28	18.58	27.64	12.53
Merged-chr6-32588152-3	chr6	32588002	32588202	+	926.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	90.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	10.9	11.57	12.55	12.07	14.73	14.42	20.93	13.32	12.19	14.56	10.55	8.14
Merged-chr17-32040466-3	chr17	32040383	32040583	+	926.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028244, intron 1 of 15)	RSINE1|SINE|B4	4321.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	10.09	12.58	21.11	16.89	25.36	10.03	18.6	25.74	15.14	13.56	34.67	20.36
Merged-chr14-58323321-3	chr14	58323229	58323429	+	926.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	250643.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	10.9	9.81	25.67	22.12	27.82	24.46	29.9	42.0	20.46	23.1	32.16	20.05
Merged-chr3-30593896-3	chr3	30593790	30593990	+	926.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	5980.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	13.73	23.39	13.69	10.86	11.86	23.2	8.64	10.91	22.42	26.61	23.62	10.34
Merged-chr9-54507767-3	chr9	54507670	54507870	+	926.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-6144.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	14.13	5.03	13.69	11.66	17.59	16.31	16.94	11.52	23.41	25.11	23.11	19.11
Merged-chr4-145229315-3	chr4	145229217	145229417	+	926.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	17553.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	15.75	11.82	31.95	18.1	16.77	17.87	27.57	37.6	21.05	15.57	34.17	23.49
Merged-chr12-52454082-3	chr12	52453983	52454183	+	926.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26526.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.46	14.09	13.69	27.75	13.5	7.84	20.26	24.95	14.36	8.54	20.1	12.53
Merged-chr18-80161704-3	chr18	80161629	80161829	+	926.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10247.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	16.96	11.57	19.97	9.25	13.09	17.25	13.62	12.25	16.13	11.05	16.08	10.65
Merged-chr7-102204730-3	chr7	102204624	102204824	+	926.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287166, intron 1 of 19)	MTD|LTR|ERVL-MaLR	5143.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	23.82	25.15	28.52	11.66	19.23	13.48	8.64	5.89	23.8	22.09	30.65	17.54
Merged-chr4-132514931-3	chr4	132514837	132515037	+	926.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4481.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	14.13	17.61	10.84	19.71	18.0	17.87	11.29	12.31	22.82	31.13	25.63	19.42
Merged-chr7-4238119-2	chr7	4238019	4238219	+	926.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081239, intron 2 of 5)	intron (NM_001081239, intron 2 of 5)	365.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	6.86	16.1	2.28	14.88	11.05	23.52	12.62	8.47	4.13	8.03	4.02	5.95
Merged-chr19-14596507-3	chr19	14596407	14596607	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 2 of 19)	intron (NM_001302951, intron 2 of 19)	706.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	12.11	14.09	21.11	21.32	13.91	10.66	11.29	17.5	16.52	20.08	19.6	14.41
Merged-chr3-89858360-3	chr3	89858248	89858448	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172530, exon 6 of 6)	3' UTR (NM_172530, exon 6 of 6)	26978.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	12.92	8.3	5.13	3.62	6.14	9.72	3.99	9.22	12.19	14.06	4.52	8.14
Merged-chr11-100848195-3	chr11	100848077	100848277	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2408.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	20.59	11.57	11.98	8.04	16.36	15.05	5.98	12.39	23.41	19.08	14.07	10.34
Merged-chr6-40585866-3	chr6	40585768	40585968	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021364)	promoter-TSS (NM_021364)	-63.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	12.92	15.85	13.12	8.85	16.36	24.15	20.59	17.33	17.9	20.59	21.61	6.27
Merged-chr4-63817739-3	chr4	63817650	63817850	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	43534.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	16.56	12.58	25.1	23.33	22.09	11.29	13.62	22.82	23.6	13.56	15.58	22.56
Merged-chr19-45236710-3	chr19	45236635	45236835	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1499.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	17.77	18.61	32.52	9.25	19.23	40.45	16.94	11.61	10.82	25.11	28.14	9.4
Merged-chr15-83016191-1	chr15	83016091	83016291	+	926.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028728, intron 2 of 5)	intron (NM_028728, intron 2 of 5)	6947.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.81	1.51	0.0	0.0	1.23	3.45	5.65	1.6	26.55	27.11	16.08	10.34
Merged-chrX-155144874-3	chrX	155144808	155145008	+	926.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081671, intron 1 of 2)	intron (NM_001081671, intron 1 of 2)	2941.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	16.15	12.07	13.69	14.08	19.64	19.44	13.62	12.81	18.29	20.08	13.57	12.84
Merged-chr2-34800635-3	chr2	34800541	34800741	+	926.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	-729.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	17.36	11.82	8.56	7.24	17.18	22.58	5.31	12.93	18.88	17.07	14.07	15.04
Merged-chr10-98608626-3	chr10	98608533	98608733	+	926.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-256766.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	35.53	39.49	26.81	11.26	11.86	29.79	12.29	27.67	50.16	23.6	40.7	38.22
Merged-chr2-103019238-2	chr2	103019133	103019333	+	926.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54280.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	9.29	6.29	7.99	9.25	18.82	16.62	7.97	12.48	21.83	12.55	19.09	10.96
Merged-chr4-123667614-2	chr4	123667515	123667715	+	926.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_136925, exon 2 of 4)	non-coding (NR_136925, exon 2 of 4)	1734.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	5.65	3.27	12.55	15.28	10.64	5.96	1.33	6.84	12.78	0.0	4.02	10.96
Merged-chr10-70215001-3	chr10	70214901	70215101	+	926.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	10337.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	9.69	18.61	11.41	26.55	16.77	12.86	14.95	18.64	28.13	21.09	28.14	20.99
Merged-chr5-18013581-4	chr5	18013556	18013756	+	926.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51086.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	2.42	1.01	4.56	11.66	2.45	5.02	7.97	4.65	5.7	3.01	4.52	5.95
Merged-chr17-29494775-5	chr17	29494698	29494898	+	926.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008842, exon 6 of 6)	3' UTR (NM_008842, exon 6 of 6)	3753.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.86	11.82	13.69	4.02	8.18	11.92	5.65	0.98	11.6	17.57	15.58	10.96
Merged-chr7-118796971-3	chr7	118796877	118797077	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027815, exon 19 of 31)	exon (NM_027815, exon 19 of 31)	56706.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	21.0	11.07	19.97	14.48	21.27	30.1	16.94	26.72	12.78	12.55	28.14	12.53
Merged-chr6-51533989-3	chr6	51533890	51534090	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9730.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	16.96	11.82	2.28	6.03	17.59	26.65	16.61	9.56	19.08	19.08	13.57	7.83
Merged-chr11-99187001-3	chr11	99186896	99187096	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31919.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	26.25	54.83	33.66	13.67	35.59	68.99	14.95	14.64	60.78	49.71	56.28	12.22
Merged-chr10-93594143-3	chr10	93594046	93594246	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045810, intron 1 of 3)	intron (NR_045810, intron 1 of 3)	-4488.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	17.77	19.12	11.41	9.25	14.32	17.56	7.64	16.54	31.86	33.64	35.17	19.11
Merged-chr4-34882771-5	chr4	34882614	34882814	+	926.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013889, intron 1 of 7)	CpG	234.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	12.52	10.56	20.54	9.65	14.32	16.93	21.26	17.92	16.33	22.59	17.59	15.66
Merged-chr13-12626253-3	chr13	12626161	12626361	+	926.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003568, intron 2 of 6)	intron (NR_003568, intron 2 of 6)	24134.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	14.13	9.81	7.99	13.67	22.09	15.05	13.29	16.37	13.37	19.08	19.09	13.16
Merged-chr16-23284611-3	chr16	23284528	23284728	+	926.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5842.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	10.9	6.54	14.26	6.44	18.41	18.19	4.65	14.97	10.42	15.57	16.58	15.04
Merged-chr9-124056525-3	chr9	124056402	124056602	+	926.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34531.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	15.75	16.35	17.68	23.73	14.32	24.46	15.61	18.98	9.64	17.07	24.12	5.64
Merged-chr9-111086329-1	chr9	111086229	111086429	+	926.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28811.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.23	2.77	2.85	3.22	13.09	16.62	13.29	17.86	1.38	5.02	4.02	4.07
Merged-chr9-21410080-3	chr9	21409989	21410189	+	926.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045742, intron 1 of 4)	intron (NR_045742, intron 1 of 4)	1631.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	19.38	12.32	11.41	16.89	9.82	14.42	13.62	14.22	25.96	15.06	32.16	15.04
Merged-chr14-54449140-3	chr14	54449098	54449298	+	926.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14949.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	7.27	12.83	2.85	5.63	6.55	14.11	6.31	8.44	19.08	12.55	25.63	7.21
Merged-chr1-86516221-3	chr1	86516123	86516323	+	926.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10334.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	10.9	8.55	18.83	6.44	17.59	19.76	12.29	7.57	20.46	31.13	19.6	10.02
Merged-chr13-46905201-3	chr13	46905109	46905309	+	926.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	24509.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	12.52	8.05	11.98	14.08	17.18	7.53	14.62	16.01	26.16	28.62	20.6	18.8
Merged-chr2-120977475-3	chr2	120977364	120977564	+	926.119019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175285, exon 1 of 14)	exon (NM_175285, exon 1 of 14)	402.0	NM_175285	96957.0	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	8.88	18.11	13.69	18.1	17.18	12.54	13.95	11.94	10.03	11.55	12.56	6.89
Merged-chr5-124598725-3	chr5	124598639	124598839	+	926.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026486)	promoter-TSS (NM_026486)	-10.0	NM_026486	67978.0	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	12.52	13.83	12.55	8.45	10.23	11.29	5.65	15.08	44.45	35.15	37.18	22.56
Merged-chrX-142718908-3	chrX	142718818	142719018	+	926.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	-20082.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	12.52	11.82	21.11	11.66	19.64	19.44	14.28	18.31	14.16	15.57	24.12	12.22
Merged-chr6-54008973-3	chr6	54008895	54009095	+	926.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30304.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	9.29	3.52	14.26	18.5	20.05	19.44	23.92	27.64	42.29	35.15	55.27	22.87
Merged-chr7-49250265-3	chr7	49250206	49250406	+	926.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4117.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	13.33	12.83	10.84	7.64	12.68	15.68	17.27	11.19	10.82	11.55	17.59	4.07
Merged-chr5-72556342-3	chr5	72556240	72556440	+	926.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133921, exon 3 of 23)	exon (NM_133921, exon 3 of 23)	3305.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	17.36	9.81	9.13	15.69	13.5	15.68	12.95	16.6	12.39	7.03	12.56	5.01
Merged-chr17-71486187-6	chr17	71486080	71486280	+	926.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10837.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	8.48	6.79	9.13	13.67	11.45	16.31	8.97	14.44	20.65	25.11	27.13	13.47
Merged-chr2-163535127-3	chr2	163535019	163535219	+	926.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	6602.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	30.28	14.84	10.84	17.7	18.41	25.09	13.62	21.98	16.92	14.56	15.58	15.98
Merged-chr2-157138239-4	chr2	157138198	157138398	+	926.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3076.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	3.23	3.27	2.85	8.45	5.32	3.45	4.32	4.23	3.15	12.05	6.03	7.21
Merged-chr16-29454984-2	chr16	29454881	29455081	+	926.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172613, intron 11 of 29)	intron (NM_172613, intron 11 of 29)	-76249.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	1.62	3.27	2.28	4.42	20.86	15.68	11.63	24.87	15.93	10.04	18.59	8.46
Merged-chr9-45893930-3	chr9	45893821	45894021	+	926.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178709, intron 5 of 13)	MTC|LTR|ERVL-MaLR	12261.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	10.5	15.59	26.24	10.05	15.96	21.64	10.96	19.12	17.51	12.55	32.66	6.89
Merged-chr11-102447661-2	chr11	102447576	102447776	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199200)	promoter-TSS (NM_199200)	-13.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	21.8	10.56	7.99	13.67	12.27	14.74	6.31	15.76	24.39	8.54	8.04	5.33
Merged-chr9-105129988-2	chr9	105129883	105130083	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029385, exon 3 of 3)	3' UTR (NM_029385, exon 3 of 3)	1822.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	14.13	8.3	6.85	15.28	24.55	17.87	12.62	23.61	4.72	4.52	2.51	10.02
Merged-chr6-114456663-1	chr6	114456563	114456763	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252643, intron 2 of 2)	GC_rich|Low_complexity|Low_complexity	-1859.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	3.63	3.77	4.56	3.22	5.32	2.2	9.63	6.28	7.87	12.05	6.53	4.07
Merged-chr13-81109925-3	chr13	81109824	81110024	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145850.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	13.73	10.31	9.13	7.24	19.23	18.81	19.93	26.97	20.46	18.58	24.62	13.78
Merged-chr10-110918672-3	chr10	110918596	110918796	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1480.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	7.27	10.06	4.56	14.48	12.68	24.46	9.3	14.44	13.57	11.05	15.07	8.14
Merged-chr10-4120904-1	chr10	4120804	4121004	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92216.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	2.83	2.26	2.85	12.07	11.45	10.03	9.3	17.3	0.2	4.52	2.51	0.0
Merged-chr17-34604761-2	chr17	34604667	34604867	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1094.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	11.31	15.09	7.42	6.44	16.77	18.5	9.63	8.92	23.6	15.57	15.07	18.8
Merged-chr9-44192867-1	chr9	44192767	44192967	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	L1MB4|LINE|L1	41179.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.81	2.52	3.42	2.41	10.23	3.76	6.31	13.99	7.47	5.52	2.51	5.64
Merged-chr15-8714088-2	chr15	8713990	8714190	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3283.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	11.31	15.59	6.28	8.45	2.05	1.88	2.33	1.96	15.54	13.56	16.58	5.33
Merged-chr16-20159149-1	chr16	20159049	20159249	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001145931, exon 6 of 8)	exon (NM_001145931, exon 6 of 8)	17085.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	3.23	2.52	0.0	6.84	2.86	5.33	6.64	8.58	0.59	3.51	3.52	5.33
Merged-chrUn_JH584304-53115-1	chrUn_JH584304	53015	53215	+	926.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	6574.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.44	17.57	16.08	22.24
Merged-chr2-27328408-1	chr2	27328308	27328508	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-81105.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	2.02	1.51	5.7	5.23	4.5	2.51	7.31	8.1	2.36	0.5	4.02	2.51
Merged-chr3-107710198-1	chr3	107710098	107710298	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-13638.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	11.71	10.82	13.12	4.02	0.82	3.14	2.33	4.35	10.03	10.54	2.01	1.57
Merged-chr3-144138794-2	chr3	144138693	144138893	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	63539.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	10.9	12.07	34.23	2.41	4.09	9.72	3.65	3.25	37.96	8.54	21.1	10.96
Merged-chr10-118604134-1	chr10	118604034	118604234	+	926.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47609.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.23	3.77	2.28	2.82	0.0	2.82	1.66	3.7	13.77	15.57	7.54	13.47
Merged-chr1-170361457-1	chr1	170361357	170361557	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	52596.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.0	0.0	0.0	0.0	9.82	3.45	14.28	15.62	0.79	4.02	4.52	2.51
Merged-chr17-32164067-3	chr17	32163974	32164174	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008716, intron 2 of 32)	intron (NM_008716, intron 2 of 32)	2778.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	12.11	16.85	25.1	20.11	7.77	17.87	6.98	13.04	15.74	15.57	36.18	21.62
Merged-chr16-94517831-3	chr16	94517705	94517905	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 1 of 7)	Lx5c|LINE|L1	8824.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	15.34	13.83	7.99	8.45	5.73	20.38	8.97	10.51	16.52	16.57	15.58	3.45
Merged-chr17-80127479-1	chr17	80127379	80127579	+	926.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	8.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	2.42	6.79	14.26	7.24	12.27	16.62	5.31	12.67	13.18	11.05	20.6	9.71
Merged-chr5-105620674-3	chr5	105620581	105620781	+	925.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79288.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	21.8	14.59	14.26	16.49	15.14	32.3	6.98	10.91	31.86	33.14	19.09	8.77
Merged-chr1-177257552-6	chr1	177257524	177257724	+	925.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8857.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	7.67	11.07	7.99	9.25	8.59	9.72	15.28	13.6	9.24	21.09	20.1	19.42
Merged-chr4-137373834-3	chr4	137373702	137373902	+	925.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16043.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	9.29	9.56	9.13	16.49	14.32	12.54	17.27	11.13	17.31	11.55	31.15	20.05
Merged-chr4-141545131-3	chr4	141545009	141545209	+	925.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1053.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	19.38	16.35	10.84	4.42	37.64	42.33	19.6	22.4	36.78	12.55	15.58	15.98
Merged-chrX-12123073-3	chrX	12122965	12123165	+	925.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	37281.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	11.31	21.63	15.4	18.5	13.91	19.13	9.97	10.21	7.67	12.05	14.57	4.39
Merged-chr11-120628185-3	chr11	120628078	120628278	+	925.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010756)	TTS (NM_010756)	-3176.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	13.33	14.34	20.54	7.24	21.68	24.77	11.29	12.59	14.95	13.56	15.58	6.89
Merged-chr5-130283195-3	chr5	130283089	130283289	+	925.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153350, exon 9 of 16)	non-coding (NR_153350, exon 9 of 16)	26152.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	9.29	9.06	18.83	17.29	13.09	15.05	23.58	29.3	16.92	16.07	31.66	18.48
Merged-chr4-95053948-3	chr4	95053816	95054016	+	925.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1694.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	18.57	9.56	10.84	16.49	11.45	11.92	9.63	15.53	38.35	25.61	43.21	26.94
Merged-chr16-35765062-2	chr16	35764960	35765160	+	925.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4296.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	20.59	7.55	16.54	27.35	26.59	19.13	26.24	23.41	5.11	7.03	10.55	8.14
Merged-chr4-87653614-3	chr4	87653504	87653704	+	925.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	152719.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	26.25	10.31	26.24	12.07	22.5	14.11	17.61	33.22	19.87	10.54	17.59	15.35
Merged-chr17-3160861-3	chr17	3160760	3160960	+	925.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 4 of 19)	CT-rich|Low_complexity|Low_complexity	45888.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	12.11	11.07	19.97	10.86	20.05	20.07	19.27	25.15	15.93	12.55	25.12	13.16
Merged-chr1-182959348-3	chr1	182959243	182959443	+	925.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	4555.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	12.92	13.33	24.53	22.93	24.96	19.13	11.29	16.99	21.83	11.05	24.62	15.98
Merged-chr10-122535344-3	chr10	122535234	122535434	+	925.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34557.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	11.71	6.79	15.4	26.14	12.68	15.68	10.63	28.63	14.95	8.03	23.62	23.18
Merged-chr13-112671868-2	chr13	112671764	112671964	+	925.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 2 of 14)	Kanga1|DNA|TcMar-Tc2	11098.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.0	1.51	0.0	0.0	11.45	8.78	15.61	20.22	37.17	32.64	66.83	28.19
Merged-chr3-81046739-1	chr3	81046639	81046839	+	925.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10323.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	2.02	2.77	12.55	8.45	26.18	9.09	17.27	31.09	8.26	8.03	8.54	15.35
Merged-chr4-119976772-5	chr4	119976689	119976889	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	162111.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	9.69	14.09	13.12	8.04	10.23	20.38	10.63	5.94	16.33	28.12	19.6	2.82
Merged-chr2-90749859-3	chr2	90749766	90749966	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018828, intron 2 of 16)	ORR1B1|LTR|ERVL-MaLR	4496.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	15.34	11.07	16.54	9.25	5.32	19.44	5.65	19.04	25.57	19.08	19.09	21.3
Merged-chr18-80490788-3	chr18	80490701	80490901	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21134.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	16.96	22.89	10.27	8.04	30.68	30.1	14.28	13.01	30.49	21.09	26.63	15.04
Merged-chr3-137810335-3	chr3	137810226	137810426	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-26711.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	12.92	7.55	6.85	8.04	17.59	13.8	9.3	18.79	24.78	15.06	33.16	13.78
Merged-chr7-125638959-3	chr7	125638865	125639065	+	925.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35536.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	15.34	10.31	12.55	16.09	21.68	23.83	24.58	24.93	30.29	18.08	18.59	9.08
Merged-chr16-35907641-3	chr16	35907543	35907743	+	925.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30827.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	21.8	14.84	20.54	10.86	22.5	23.52	9.97	16.77	22.23	16.07	28.14	9.71
Merged-chr3-87351193-3	chr3	87351093	87351293	+	925.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6688.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	9.69	15.09	19.97	20.91	19.64	26.97	31.89	18.06	34.42	34.14	39.7	29.45
Merged-chr3-154885704-1	chr3	154885604	154885804	+	925.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169703.0	NM_177066	435766.0	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.0	1.26	2.85	0.8	0.0	0.0	1.99	0.2	18.49	12.05	38.69	17.23
Merged-chr4-141300446-1	chr4	141300346	141300546	+	925.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-775.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	6.06	2.01	6.85	1.21	4.09	13.48	12.62	15.84	7.28	4.02	8.04	2.82
Merged-chr7-81212376-3	chr7	81212287	81212487	+	925.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	11.31	13.33	14.26	8.45	23.32	12.23	12.29	11.83	22.23	14.56	14.07	17.86
Merged-chr12-70471559-3	chr12	70471460	70471660	+	925.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	18406.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	18.57	12.07	13.69	6.84	14.32	21.01	13.62	15.0	26.36	25.11	15.58	20.36
Merged-chr7-142372242-3	chr7	142372133	142372333	+	925.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177265)	promoter-TSS (NM_177265)	26.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	17.77	13.83	22.82	11.66	2.86	4.08	8.3	4.71	23.6	26.11	27.13	12.84
Merged-chr4-156255162-3	chr4	156255051	156255251	+	925.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355709, intron 1 of 10)	intron (NM_001355709, intron 1 of 10)	191.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	20.19	15.59	14.83	14.88	25.36	22.26	16.94	29.55	7.28	8.03	7.03	12.53
Merged-chr16-51926844-3	chr16	51926752	51926952	+	925.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	60435.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	4.85	12.07	19.4	7.64	19.64	5.64	8.97	25.91	17.9	6.03	13.06	14.41
Merged-chr7-102246072-3	chr7	102245990	102246190	+	925.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4028.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	12.92	12.58	11.98	4.02	13.09	22.26	14.95	7.26	16.33	13.05	15.58	5.01
Merged-chr16-65629401-3	chr16	65629282	65629482	+	925.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66685.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	14.13	6.29	18.83	17.29	18.0	9.09	12.95	20.05	15.74	5.02	17.08	8.77
Merged-chr5-62521256-1	chr5	62521156	62521356	+	925.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	244921.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.46	5.53	8.56	8.45	1.64	1.25	1.99	4.35	17.9	21.09	8.54	15.98
Merged-chr11-101143842-3	chr11	101143728	101143928	+	925.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12056.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	12.52	10.06	7.99	6.03	19.64	43.9	13.62	15.2	40.91	39.67	32.66	25.06
Merged-chr1-155982891-1	chr1	155982791	155982991	+	925.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-9636.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	2.42	4.28	0.0	0.4	5.73	2.82	0.66	0.39	10.23	18.58	4.52	11.59
Merged-chr10-37319303-3	chr10	37319200	37319400	+	925.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-180374.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	29.88	19.62	11.41	14.88	26.18	29.48	7.97	14.89	24.39	35.15	16.08	8.77
Merged-chr8-3515414-3	chr8	3515320	3515520	+	925.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	36.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	11.31	14.09	11.41	14.48	13.91	13.17	13.29	18.56	17.9	10.54	26.63	14.41
Merged-chr7-118275414-3	chr7	118275304	118275504	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31497.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	18.57	14.09	12.55	12.07	27.82	25.4	19.27	16.12	17.11	27.62	30.15	21.93
Merged-chr2-32509469-3	chr2	32509375	32509575	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25884.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	16.15	6.79	17.68	17.29	17.18	15.99	18.93	18.14	17.31	17.07	19.09	21.3
Merged-chr14-60757447-3	chr14	60757344	60757544	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10690.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	10.5	13.58	6.85	6.84	27.82	39.2	11.29	11.38	20.65	19.08	12.06	7.83
Merged-chr15-76702154-3	chr15	76702067	76702267	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027122, exon 1 of 5)	exon (NM_027122, exon 1 of 5)	625.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	8.88	11.82	11.41	12.47	19.64	19.44	13.29	16.93	26.16	27.11	42.21	13.16
Merged-chr15-53137561-3	chr15	53137441	53137641	+	925.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	L2c|LINE|L2	208642.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	16.56	10.31	9.7	10.46	16.36	36.69	26.57	30.31	27.14	8.54	21.1	12.22
Merged-chr9-121636384-3	chr9	121636281	121636481	+	925.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5212.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	10.09	9.31	18.25	23.33	28.23	17.87	22.92	22.07	21.64	18.58	21.61	15.66
Merged-chr6-106283881-2	chr6	106283788	106283988	+	925.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	165123.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	5.65	2.01	0.0	8.85	10.64	9.41	8.97	23.75	36.39	44.69	65.32	25.69
Merged-chr1-64929242-2	chr1	64929141	64929341	+	925.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	RMER1B|Other|Other	27583.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.46	8.05	16.54	9.65	15.55	12.23	10.63	10.74	15.34	9.04	26.63	11.9
Merged-chr15-25623151-3	chr15	25623058	25623258	+	925.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	CpG	608.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	35.13	25.4	4.56	9.25	11.45	30.42	17.27	11.66	26.16	28.12	26.63	12.84
Merged-chr10-79889589-3	chr10	79889499	79889699	+	925.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1254.0	NM_001329541	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	11.71	12.83	5.13	14.88	17.18	18.81	7.64	21.53	19.47	14.06	13.57	17.86
Merged-chr12-71040598-3	chr12	71040494	71040694	+	925.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 8 of 23)	PB1|SINE|Alu	24627.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	13.73	9.31	1.14	15.28	14.73	6.9	7.31	17.97	19.67	19.08	17.59	6.27
Merged-chr13-64373870-3	chr13	64373761	64373961	+	925.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3341.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	17.77	23.64	26.81	8.45	40.5	22.58	19.27	39.36	23.01	35.15	33.16	8.46
Merged-chr17-29396347-3	chr17	29396254	29396454	+	925.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35440.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.48	9.06	9.13	4.02	18.82	15.99	4.32	4.71	21.83	21.09	17.59	12.22
Merged-chr14-31382576-3	chr14	31382455	31382655	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	35122.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	9.69	16.6	22.82	6.44	10.64	15.68	16.94	10.54	24.0	21.59	25.63	15.98
Merged-chr11-20958485-1	chr11	20958385	20958585	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127377.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.85	3.77	6.85	5.63	7.77	5.02	0.66	10.04	0.79	2.01	0.5	2.82
Merged-chr11-69995039-3	chr11	69994934	69995134	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-732.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	26.65	10.31	24.53	11.66	14.32	12.86	5.31	14.66	26.75	21.09	18.09	14.1
Merged-chr1-133012504-1	chr1	133012404	133012604	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008575, intron 4 of 11)	intron (NM_008575, intron 4 of 11)	12912.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.42	3.27	10.84	5.63	9.41	14.74	3.32	7.79	2.36	8.03	8.04	3.76
Merged-chr4-56757489-2	chr4	56757374	56757574	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026079, intron 34 of 36)	intron (NM_026079, intron 34 of 36)	14052.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	4.04	3.02	7.99	1.61	13.91	7.21	6.98	17.3	83.79	81.84	127.63	70.17
Merged-chr17-84334459-3	chr17	84334357	84334557	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 27 of 37)	intron (NM_183021, intron 27 of 37)	131751.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	9.29	16.6	20.54	14.88	12.68	12.23	12.62	12.03	14.95	16.07	26.63	14.1
Merged-chr13-111798147-3	chr13	111798040	111798240	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10853.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	10.9	9.81	15.4	7.24	43.36	32.93	28.23	37.32	39.34	22.09	41.71	18.48
Merged-chr11-84619848-3	chr11	84619760	84619960	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	94200.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	20.19	14.09	18.25	26.55	20.46	14.74	9.97	21.45	30.29	14.06	15.07	17.23
Merged-chr13-100824627-1	chr13	100824527	100824727	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022885, intron 4 of 15)	intron (NM_022885, intron 4 of 15)	8800.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	7.67	4.02	2.28	8.04	15.55	7.84	3.99	13.85	9.24	6.53	8.54	6.58
Merged-chr10-84722288-3	chr10	84722194	84722394	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-33754.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	16.15	7.8	10.84	28.96	21.68	18.5	20.59	24.45	15.74	23.1	23.11	16.29
Merged-chr1-191422911-2	chr1	191422822	191423022	+	925.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25881.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	2.42	3.52	6.85	1.61	11.45	11.6	5.98	10.09	22.42	20.08	23.62	10.65
Merged-chr6-22494104-3	chr6	22494015	22494215	+	925.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138034.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	21.4	5.03	5.7	12.87	24.96	18.5	14.28	21.42	25.77	17.57	14.07	8.77
Merged-chr11-69261456-3	chr11	69261376	69261576	+	925.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24454.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	8.88	9.56	27.38	19.71	15.55	9.72	15.61	37.99	20.46	13.05	21.61	12.84
Merged-chr3-27183875-4	chr3	27183785	27183985	+	925.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	881.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	9.29	11.57	7.42	7.24	18.41	13.17	10.3	9.64	9.83	13.56	19.6	17.86
Merged-chr11-85691504-3	chr11	85691405	85691605	+	925.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	28239.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	15.34	8.8	29.66	31.37	23.32	21.64	30.56	48.25	18.69	19.58	13.57	14.41
Merged-chr6-39778683-3	chr6	39778589	39778789	+	925.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32247.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	8.48	10.31	19.97	23.73	40.91	19.76	19.27	48.73	12.78	18.58	17.08	16.92
Merged-chr11-119249172-3	chr11	119249083	119249283	+	925.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18780.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	20.59	18.36	21.68	26.55	16.77	23.52	5.65	12.0	14.36	10.04	16.58	20.36
Merged-chr17-34746805-3	chr17	34746699	34746899	+	925.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2902.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	11.71	9.31	8.56	26.95	19.23	10.98	12.95	14.52	19.08	25.61	23.62	16.92
Merged-chr11-118270425-3	chr11	118270322	118270522	+	925.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033528, intron 13 of 20)	intron (NM_001033528, intron 13 of 20)	19822.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	13.33	31.69	18.25	15.28	20.86	24.15	10.96	13.23	17.51	20.08	8.54	8.14
Merged-chr2-26604420-3	chr2	26604323	26604523	+	925.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-6.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	13.73	11.57	14.83	11.26	23.32	23.83	17.27	18.95	13.77	20.08	18.09	12.22
Merged-chr5-141014411-3	chr5	141014316	141014516	+	925.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13820.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	11.71	6.79	12.55	24.13	19.64	14.42	6.31	13.63	23.41	19.08	28.64	22.87
Merged-chr13-55430775-2	chr13	55430682	55430882	+	925.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3978.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	6.86	5.03	9.7	12.87	9.41	11.29	5.65	11.24	20.06	20.08	24.12	15.66
Merged-chr2-32710588-3	chr2	32710486	32710686	+	925.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	2198.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	12.52	8.3	22.25	15.28	25.36	17.25	12.62	16.4	18.69	12.55	14.57	9.71
Merged-chr3-34020552-2	chr3	34020450	34020650	+	925.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113189, intron 1 of 16)	CpG	471.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	5.25	8.3	4.56	10.86	13.91	13.48	11.63	11.24	23.21	12.05	15.58	9.71
Merged-chr13-64308189-3	chr13	64308108	64308308	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025370, intron 4 of 5)	MTD|LTR|ERVL-MaLR	4502.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	30.28	21.88	42.78	53.09	52.77	62.09	61.78	84.39	10.23	10.04	25.12	17.23
Merged-chr17-81538356-3	chr17	81538262	81538462	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	ORR1E|LTR|ERVL-MaLR	200025.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	12.52	19.12	34.8	34.19	11.05	11.92	12.95	19.93	19.28	16.07	38.19	11.59
Merged-chr6-55167176-3	chr6	55167013	55167213	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7877.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	7.27	15.85	6.85	11.26	19.23	11.6	15.94	15.25	7.67	9.54	4.02	6.89
Merged-chr12-79813926-3	chr12	79813807	79814007	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	110826.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.86	12.58	7.42	18.9	9.0	8.15	15.28	11.38	20.46	17.57	18.59	11.28
Merged-chr2-29629519-1	chr2	29629419	29629619	+	925.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	9799.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.23	4.02	2.28	0.0	2.05	9.41	6.98	0.95	15.34	13.56	16.08	1.57
Merged-chr2-128967860-3	chr2	128967792	128967992	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178404, intron 1 of 11)	GC_rich|Low_complexity|Low_complexity	490.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	16.56	11.82	7.99	19.31	12.27	24.15	17.27	12.73	17.31	17.07	5.53	12.22
Merged-chr6-34956443-3	chr6	34956344	34956544	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025573, intron 4 of 7)	intron (NM_001025573, intron 4 of 7)	21555.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	8.48	12.83	0.57	1.61	7.36	17.56	5.98	2.8	18.1	21.59	9.04	1.88
Merged-chr10-93889801-3	chr10	93889652	93889852	+	925.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019648, exon 2 of 12)	5' UTR (NM_019648, exon 2 of 12)	1450.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	6.06	13.83	18.25	8.85	15.96	11.29	12.29	18.39	16.72	9.54	24.62	7.21
Merged-chr16-44242785-3	chr16	44242601	44242801	+	925.279358	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	69304.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.65	6.79	5.7	3.22	5.32	6.59	1.0	8.8	11.01	15.57	13.57	7.52
Merged-chr5-134690464-3	chr5	134690373	134690573	+	925.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	16.56	9.06	36.51	19.71	11.86	13.48	13.62	10.77	24.78	25.61	30.15	15.04
Merged-chr10-80215299-3	chr10	80215195	80215395	+	925.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-11303.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	20.59	19.62	19.97	10.86	20.86	32.3	21.26	11.61	18.29	32.64	21.61	22.87
Merged-chrX-61723230-4	chrX	61723140	61723340	+	925.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13624.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	3.23	9.31	7.42	11.26	7.77	7.53	16.94	23.58	17.51	17.57	32.66	17.86
Merged-chr17-8199237-3	chr17	8199126	8199326	+	925.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33708.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	18.98	16.35	30.23	22.12	19.23	13.8	10.96	16.74	8.85	9.04	30.15	11.9
Merged-chr7-141549647-2	chr7	141549539	141549739	+	925.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9782.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	6.06	4.28	9.7	3.62	14.73	17.56	16.28	16.21	8.85	17.57	21.61	11.28
Merged-chr9-44213693-3	chr9	44213601	44213801	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	20345.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	35.53	30.18	29.66	33.38	11.05	23.52	18.27	26.52	13.77	18.08	14.57	11.9
Merged-chr11-119944791-3	chr11	119944698	119944898	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	1706.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	28.67	19.62	13.12	18.5	18.82	19.44	12.29	25.74	27.14	12.05	19.09	16.6
Merged-chr15-81024054-3	chr15	81023954	81024154	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46289.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	12.52	8.3	36.51	24.13	14.32	12.86	24.91	25.18	12.19	9.04	25.63	8.46
Merged-chr3-88593418-3	chr3	88593320	88593520	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13812.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	13.33	11.32	17.11	8.04	14.32	19.44	8.64	28.82	15.93	18.58	15.58	14.1
Merged-chr14-27114838-3	chr14	27114734	27114934	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-29159.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	13.33	7.04	9.13	20.91	18.82	15.37	17.94	23.75	16.72	18.08	19.09	4.7
Merged-chr5-35755527-3	chr5	35755428	35755628	+	925.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2352.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	29.88	13.08	15.97	12.07	24.96	60.21	19.27	18.2	30.09	42.68	30.65	10.34
Merged-chr5-117360740-3	chr5	117360629	117360829	+	925.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	3424.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	14.54	4.53	20.54	12.47	20.46	9.41	14.62	34.99	24.98	14.06	10.55	15.35
Merged-chr2-118546385-3	chr2	118546274	118546474	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	1225.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	14.54	20.88	7.42	5.63	13.09	35.12	3.65	3.98	17.51	26.11	12.56	6.58
Merged-chr7-67444786-3	chr7	67444598	67444798	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71840.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.83	10.06	4.56	8.85	8.18	7.21	7.64	7.18	10.42	10.54	9.04	4.7
Merged-chr6-136465207-3	chr6	136465120	136465320	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-49651.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	17.36	11.32	12.55	8.04	15.14	21.95	12.29	18.84	37.57	34.65	36.18	28.51
Merged-chr14-69804860-3	chr14	69804771	69804971	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	674.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	18.98	11.07	13.69	15.69	15.55	20.7	8.64	17.38	21.05	12.55	23.62	9.08
Merged-chr11-107466164-3	chr11	107466091	107466291	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	B4|SINE|B4	4529.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	15.75	7.29	18.25	11.26	17.59	19.44	15.61	19.15	22.82	14.56	31.66	12.22
Merged-chr3-75499123-3	chr3	75499035	75499235	+	925.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57717.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	13.73	9.06	16.54	11.66	17.59	9.41	10.3	19.26	17.11	9.54	36.68	20.99
Merged-chr2-152805039-3	chr2	152804910	152805110	+	925.14447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23479.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	11.31	9.81	13.12	25.34	18.0	12.23	11.29	12.9	11.21	13.05	14.57	9.4
Merged-chr8-4524633-3	chr8	4524518	4524718	+	925.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026058, exon 11 of 11)	3' UTR (NM_026058, exon 11 of 11)	31213.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	6.46	6.29	20.54	16.49	36.82	15.05	32.55	34.23	18.29	19.08	24.62	25.37
Merged-chr11-20712381-2	chr11	20712273	20712473	+	925.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181411, intron 2 of 8)	intron (NM_181411, intron 2 of 8)	29183.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	2.42	5.28	1.71	0.8	8.59	14.42	7.64	14.13	29.7	17.07	10.05	5.64
Merged-chr10-67712798-3	chr10	67712701	67712901	+	925.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140842.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	9.29	8.55	13.12	12.87	14.32	17.87	21.59	25.46	12.78	17.57	33.16	16.29
Merged-chr5-99254063-3	chr5	99253938	99254138	+	925.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1111.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.88	12.07	14.83	18.5	13.09	8.47	11.96	11.38	18.29	7.03	12.56	9.4
Merged-chr19-4214716-3	chr19	4214646	4214846	+	925.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310039, intron 1 of 2)	CpG	357.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	4.85	19.87	9.7	2.41	6.55	10.66	8.97	6.62	13.18	23.1	1.51	13.47
Merged-chr16-50763343-3	chr16	50763254	50763454	+	925.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-20055.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	5.65	10.82	20.54	0.8	10.23	10.66	6.31	11.61	21.83	5.52	18.59	3.13
Merged-chr4-82513308-3	chr4	82513243	82513443	+	925.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137202, intron 1 of 1)	CpG	5354.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	22.21	9.31	15.97	7.24	6.95	18.81	18.27	20.22	10.03	12.55	17.08	10.34
Merged-chr8-75193238-3	chr8	75193156	75193356	+	925.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-20688.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	10.9	15.85	14.83	25.74	15.14	21.64	17.94	26.66	25.18	10.04	27.64	20.99
Merged-chr19-44394146-3	chr19	44394034	44394234	+	925.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009127)	TTS (NM_009127)	13575.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	12.52	7.55	13.69	19.71	18.0	34.18	15.28	32.36	29.9	22.09	28.14	12.84
Merged-chr13-21945221-3	chr13	21945117	21945317	+	925.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360886, intron 1 of 5)	CpG	117.0	NM_001360886	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	22.21	22.89	9.7	13.67	13.91	16.31	18.6	19.4	11.8	13.56	18.09	14.41
Merged-chr8-88650351-4	chr8	88650255	88650455	+	925.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	3008.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	7.67	10.31	14.83	2.82	8.18	21.64	5.98	2.52	15.54	10.04	5.53	5.64
Merged-chr4-133751751-3	chr4	133751668	133751868	+	925.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	1843.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	9.29	17.1	6.85	6.44	14.73	23.52	6.64	11.86	13.96	19.08	19.09	8.14
Merged-chr8-46899294-1	chr8	46899194	46899394	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87593.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.23	4.28	3.42	6.44	6.95	4.7	4.32	9.53	8.65	5.02	6.53	2.82
Merged-chr16-95840039-3	chr16	95839923	95840123	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	58690.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	15.34	6.54	11.98	7.64	16.77	18.19	12.29	27.93	18.88	19.08	12.06	12.84
Merged-chr13-92030904-2	chr13	92030797	92030997	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42855.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	3.63	2.77	6.28	1.61	36.82	27.59	23.92	50.02	14.75	15.06	25.63	9.08
Merged-chr14-34314601-1	chr14	34314501	34314701	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	3874.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	7.67	2.52	5.7	9.25	3.27	10.98	8.3	10.4	4.13	1.51	7.03	5.33
Merged-chr10-113027497-1	chr10	113027397	113027597	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98471.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.81	3.02	2.28	4.83	2.05	2.51	7.31	8.3	4.13	1.51	2.51	5.64
Merged-chr9-83727712-1	chr9	83727612	83727812	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36237.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	3.23	5.53	1.14	2.01	7.36	12.86	12.95	9.67	8.06	7.53	16.08	5.01
Merged-chr18-39763701-3	chr18	39763594	39763794	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9803.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	18.17	17.61	18.25	8.45	8.59	23.83	14.28	13.4	30.49	36.15	38.19	20.99
Merged-chr11-96404507-1	chr11	96404407	96404607	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38749.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	2.42	0.5	1.14	1.61	4.09	7.21	9.3	13.63	0.39	3.01	2.01	2.82
Merged-chr9-70007153-1	chr9	70007053	70007253	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-5395.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	6.46	5.53	12.55	5.63	10.64	15.05	9.97	17.97	4.92	5.52	9.55	4.07
Merged-chr11-68468190-3	chr11	68468059	68468259	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-34860.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	22.61	29.93	22.82	11.66	35.18	58.64	33.88	19.88	32.06	37.16	31.15	11.28
Merged-chr4-81673942-1	chr4	81673842	81674042	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186929.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	1.62	2.52	6.85	6.03	3.27	4.39	5.65	8.92	4.72	3.51	2.51	8.46
Merged-chrUn_GL456239-36269-1	chrUn_GL456239	36169	36369	+	925.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.79	6.03	0.5	4.07
Merged-chr11-53780267-2	chr11	53780072	53780272	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	9699.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.44	4.53	0.0	0.0	3.68	8.47	0.66	1.04	4.13	2.51	0.5	0.0
Merged-chr8-36994362-3	chr8	36994259	36994459	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039220, exon 1 of 1)	exon (NM_001039220, exon 1 of 1)	784.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	31.9	19.62	53.62	43.04	42.14	31.36	37.2	64.65	15.14	9.54	15.58	6.27
Merged-chr19-29484758-3	chr19	29484584	29484784	+	924.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37303.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.48	8.05	14.26	6.44	12.27	7.53	9.3	12.34	10.23	7.53	21.61	8.77
Merged-chr6-97509612-3	chr6	97509516	97509716	+	924.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-21796.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.44	13.33	32.52	16.89	12.27	11.29	14.28	7.63	28.52	9.54	30.65	10.65
Merged-chr4-126401157-2	chr4	126401050	126401250	+	924.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153402, intron 5 of 18)	intron (NM_153402, intron 5 of 18)	28392.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	14.94	12.58	31.95	18.1	9.0	12.23	12.29	12.62	8.65	3.51	6.53	8.14
Merged-chr11-22809543-3	chr11	22809424	22809624	+	924.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50211.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	12.92	9.81	13.69	11.66	9.82	12.86	18.93	15.39	8.85	13.56	26.13	17.23
Merged-chr7-19845300-3	chr7	19845206	19845406	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6697.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	17.36	15.34	26.81	13.27	27.0	28.22	13.29	21.45	23.8	14.56	17.59	15.66
Merged-chr3-87369365-3	chr3	87369267	87369467	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 5 of 5)	intron (NM_009690, intron 5 of 5)	-7020.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	5.65	2.26	20.54	25.74	9.0	7.84	8.64	18.25	18.69	7.03	21.61	13.78
Merged-chr13-100451329-3	chr13	100451212	100451412	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008670, intron 1 of 15)	ID_B1|SINE|B4	1552.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	12.92	18.86	4.56	4.42	7.77	28.85	16.94	4.15	41.5	18.58	28.14	13.16
Merged-chr4-95048313-3	chr4	95048234	95048434	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010591)	TTS (NM_010591)	3888.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	13.73	11.07	23.39	17.7	15.14	22.26	7.97	15.84	11.6	13.56	12.56	7.83
Merged-chr19-53904088-3	chr19	53903909	53904109	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168491, intron 1 of 11)	CpG	658.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	10.5	11.82	9.7	9.65	12.27	6.9	12.62	16.6	7.28	17.07	8.54	9.4
Merged-chr5-139734331-3	chr5	139734249	139734449	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1984.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	14.54	12.32	17.68	6.44	18.0	7.84	11.63	22.04	13.96	15.06	35.68	21.3
Merged-chr7-46607899-3	chr7	46607806	46608006	+	924.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	31901.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	18.57	9.31	15.97	21.32	25.36	29.48	18.93	41.24	20.65	10.04	26.63	18.17
Merged-chr6-52204522-3	chr6	52204425	52204625	+	924.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010453)	promoter-TSS (NM_010453)	62.0	NM_010453	15402.0	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	15.75	9.81	19.97	13.67	7.36	19.76	7.97	10.49	20.85	28.12	37.18	13.16
Merged-chr18-34885062-3	chr18	34884926	34885126	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23819.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	11.71	23.14	18.25	20.11	20.05	21.01	5.65	16.18	20.85	9.04	10.05	16.29
Merged-chr9-116350906-2	chr9	116350823	116351023	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	161743.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	6.86	11.57	25.67	16.89	19.64	9.72	9.3	14.41	4.72	12.55	9.04	3.76
Merged-chr13-5870062-3	chr13	5869943	5870143	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8554.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	9.69	13.33	13.12	14.08	17.18	15.99	11.63	14.86	32.85	22.59	15.58	18.17
Merged-chr1-82761631-3	chr1	82761539	82761739	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025453, intron 2 of 3)	MIR|SINE|MIR	6817.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	8.48	7.55	28.52	18.1	27.82	25.09	18.6	25.57	22.03	31.63	24.62	19.74
Merged-chr19-46523656-3	chr19	46523557	46523757	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	22009.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	14.94	9.81	10.27	21.72	15.14	11.29	20.93	23.07	23.6	13.56	30.15	13.78
Merged-chr13-113032594-1	chr13	113032494	113032694	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2785.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	17.77	15.85	13.12	18.5	2.45	1.25	4.32	1.15	1.18	0.0	2.01	0.94
Merged-chr5-130278321-3	chr5	130278212	130278412	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153350, intron 8 of 15)	intron (NR_153350, intron 8 of 15)	21275.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	9.69	9.81	14.26	14.88	20.86	26.34	21.59	36.67	20.85	22.09	30.65	17.54
Merged-chr7-80387248-3	chr7	80387145	80387345	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010194, exon 2 of 19)	exon (NM_010194, exon 2 of 19)	701.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	18.57	9.31	16.54	15.28	27.82	17.87	19.93	24.93	25.37	31.63	29.14	24.12
Merged-chr7-19180933-3	chr7	19180833	19181033	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-237.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	13.33	11.57	10.84	6.84	14.32	13.8	13.29	14.44	17.9	11.55	15.07	16.92
Merged-chr2-145730694-3	chr2	145730566	145730766	+	924.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	29471.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	12.11	6.29	12.55	13.27	23.32	27.91	18.27	29.52	22.03	24.6	50.75	18.48
Merged-chr4-148772945-3	chr4	148772846	148773046	+	924.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31446.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	30.69	22.39	15.4	25.74	18.0	12.54	18.6	18.53	12.78	4.02	14.07	12.22
Merged-chr9-56506126-3	chr9	56506030	56506230	+	924.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87511.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	16.96	12.32	6.85	12.07	12.27	21.95	6.64	9.73	19.08	14.56	19.6	11.28
Merged-chr15-100153234-3	chr15	100153183	100153383	+	924.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1113.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	17.36	10.56	13.69	10.46	13.5	7.84	10.3	21.2	14.16	13.56	16.08	7.83
Merged-chr5-105652095-2	chr5	105651985	105652185	+	924.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47884.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	15.75	9.06	17.68	12.47	34.77	11.92	14.62	22.35	4.92	1.51	1.51	1.25
Merged-chr9-104581798-1	chr9	104581698	104581898	+	924.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	12315.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.25	3.02	5.13	5.63	14.32	6.9	14.62	21.03	2.36	0.5	4.52	3.45
Merged-chr1-80757054-3	chr1	80756949	80757149	+	924.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	1504.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	26.25	22.39	10.84	11.66	28.64	36.06	15.61	30.0	23.6	23.1	15.58	14.41
Merged-chr2-71020016-3	chr2	71019926	71020126	+	924.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-1652.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	16.15	15.85	18.83	34.59	19.64	24.46	19.27	24.76	13.18	11.55	16.08	10.96
Merged-chr16-52182233-3	chr16	52182118	52182318	+	924.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150669.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	10.9	17.36	17.68	16.09	15.14	8.15	4.32	11.02	25.77	14.56	20.1	8.46
Merged-chr11-75513488-3	chr11	75513404	75513604	+	924.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-37.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	15.34	11.32	18.25	7.24	29.05	15.99	8.64	13.07	23.41	11.55	25.12	5.33
Merged-chr3-79181368-3	chr3	79181244	79181444	+	924.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31575.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	19.79	11.07	9.13	8.45	15.55	19.76	9.63	12.93	32.26	34.14	48.74	19.11
Merged-chr15-80025897-3	chr15	80025791	80025991	+	924.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11083.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	29.48	37.98	39.93	17.29	48.68	91.88	36.54	22.79	24.98	20.08	7.03	7.52
Merged-chr5-100608092-2	chr5	100607998	100608198	+	924.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35893.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.44	1.51	5.13	10.46	14.32	8.47	12.29	15.34	18.49	9.54	13.57	9.4
Merged-chr1-77442205-3	chr1	77442117	77442317	+	924.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	54551.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	8.88	10.82	20.54	30.97	28.64	22.89	22.26	31.32	18.49	24.1	43.21	9.08
Merged-chr14-27356329-3	chr14	27356232	27356432	+	924.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5057.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	15.75	13.58	19.4	9.65	25.36	50.49	27.24	29.61	29.5	34.65	33.67	13.16
Merged-chr15-27616364-3	chr15	27616298	27616498	+	924.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013792, exon 4 of 7)	exon (NM_001013792, exon 4 of 7)	14295.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	9.29	12.07	27.95	25.74	16.77	12.54	30.89	29.24	13.77	11.05	21.1	11.59
Merged-chr10-56115312-3	chr10	56115177	56115377	+	924.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163833, exon 2 of 2)	exon (NM_001163833, exon 2 of 2)	8360.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	11.71	11.32	10.27	6.44	13.5	13.8	8.97	12.53	13.77	14.56	20.6	19.11
Merged-chr12-85479554-9	chr12	85479480	85479680	+	924.5925900000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5690.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	14.13	18.86	16.54	26.14	29.05	19.13	5.31	9.28	18.88	20.08	14.57	15.66
Merged-chr19-44416383-2	chr19	44416279	44416479	+	924.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8670.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.62	4.28	7.42	4.02	4.09	13.48	14.62	14.69	13.37	10.54	24.12	12.53
Merged-chr10-30678305-3	chr10	30678209	30678409	+	924.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-22442.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	11.71	7.8	33.09	21.72	31.91	17.87	27.9	28.32	30.88	28.62	30.65	23.49
Merged-chr5-34242510-4	chr5	34242433	34242633	+	924.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	45791.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	5.65	0.5	3.99	14.48	24.55	2.51	4.98	13.15	3.34	3.01	6.03	9.08
Merged-chr19-57611632-5	chr19	57611516	57611716	+	924.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181415, exon 1 of 29)	exon (NM_181415, exon 1 of 29)	582.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	15.34	13.08	15.97	19.71	11.86	15.05	11.96	8.61	10.82	11.05	10.55	7.83
Merged-chr8-95141843-3	chr8	95141775	95141975	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	665.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	7.67	12.32	9.7	19.31	13.09	11.6	16.94	13.65	11.8	9.04	9.55	11.28
Merged-chr17-44029833-3	chr17	44029755	44029955	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-48947.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	66.63	64.89	46.78	45.05	33.55	35.43	17.61	24.53	13.37	9.04	5.02	10.96
Merged-chr12-85492280-3	chr12	85492164	85492364	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18374.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	14.94	9.31	7.42	14.08	21.68	13.48	9.63	12.87	12.59	21.09	27.13	12.84
Merged-chr3-96251339-3	chr3	96251251	96251451	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4651.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	14.54	5.79	17.11	28.96	19.23	10.66	17.27	32.97	13.57	14.06	21.1	16.92
Merged-chr14-55764514-4	chr14	55764399	55764599	+	924.537476	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1463.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	11.31	7.8	18.25	6.84	4.5	11.6	12.29	9.9	7.08	14.56	13.06	18.17
Merged-chr6-57803319-2	chr6	57803209	57803409	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	Lx8|LINE|L1	21816.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.65	2.01	11.98	5.63	20.86	21.01	17.27	31.57	11.21	14.56	33.67	19.42
Merged-chr4-150673031-2	chr4	150672929	150673129	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20855.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	10.5	8.8	6.28	2.41	13.91	17.25	5.98	7.71	4.52	5.52	7.54	4.07
Merged-chr19-53554651-2	chr19	53554559	53554759	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25341.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	12.52	7.29	13.12	9.25	22.5	11.6	15.28	14.24	6.88	5.02	1.51	3.13
Merged-chr14-101503789-1	chr14	101503689	101503889	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 3 of 18)	intron (NM_001081278, intron 3 of 18)	105402.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.65	6.54	4.56	11.66	13.09	7.53	10.63	11.86	10.23	8.54	4.52	3.45
Merged-chrX-7604278-1	chrX	7604178	7604378	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138603, exon 2 of 17)	exon (NM_138603, exon 2 of 17)	1142.0	NM_138603	54638.0	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	6.46	2.77	5.13	6.44	13.09	8.78	2.66	14.58	11.41	6.53	5.53	5.64
Merged-chr15-66803971-1	chr15	66803871	66804071	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27858.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.04	1.26	6.85	1.21	7.36	15.99	1.99	9.36	11.21	5.02	4.52	2.51
Merged-chr11-116100578-3	chr11	116100473	116100673	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9662.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	16.96	10.56	11.98	8.04	21.27	14.42	14.62	20.86	22.03	18.08	17.59	15.98
Merged-chr15-100762095-2	chr15	100762006	100762206	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021530, intron 1 of 24)	CpG	359.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	16.56	10.06	23.96	8.04	18.0	20.38	9.63	7.4	11.8	15.57	15.58	11.59
Merged-chr7-51982048-1	chr7	51981948	51982148	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	23666.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	1.26	2.28	3.22	9.82	4.08	7.64	11.69	0.0	0.0	0.5	0.31
Merged-chr11-45546165-4	chr11	45546099	45546299	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261884.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	26.25	23.64	23.39	35.39	28.23	18.5	27.24	31.29	21.64	17.57	19.6	12.53
Merged-chr18-38415762-3	chr18	38415699	38415899	+	924.460327	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3108.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.42	7.8	15.4	9.25	11.05	11.6	24.25	13.49	10.82	16.57	18.59	14.41
Merged-chr16-33400378-3	chr16	33400275	33400475	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358569)	promoter-TSS (NM_001358569)	-70.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	12.52	15.09	37.65	10.05	15.96	17.25	14.28	19.71	18.1	14.06	16.58	11.9
Merged-chr1-90973440-3	chr1	90973341	90973541	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3821.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	23.42	12.07	23.96	10.05	12.27	19.13	7.64	13.77	31.47	28.62	19.6	17.54
Merged-chr7-107609814-3	chr7	107609711	107609911	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	2967.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	26.65	26.66	29.09	13.67	12.27	28.22	10.96	7.23	33.44	31.63	28.14	14.1
Merged-chrX-107144138-3	chrX	107144029	107144229	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-4798.0	NM_001122596	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	14.94	9.81	22.25	9.65	13.5	19.13	22.92	16.21	7.87	16.57	16.58	14.41
Merged-chr19-43801621-3	chr19	43801505	43801705	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013806, intron 7 of 31)	intron (NM_013806, intron 7 of 31)	19297.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	2.42	9.81	3.99	6.44	13.09	7.21	10.3	11.89	19.47	12.05	18.59	10.34
Merged-chr5-135478208-3	chr5	135478110	135478310	+	924.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	66912.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	19.38	6.29	17.11	10.46	16.36	16.62	14.62	17.86	23.6	19.08	20.1	11.59
Merged-chr3-20348390-2	chr3	20348286	20348486	+	924.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175086, intron 1 of 1)	MusHAL1|LINE|L1	18791.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	6.06	10.06	9.13	12.87	13.09	16.31	11.29	22.46	11.01	15.57	23.11	10.34
Merged-chr19-60889256-2	chr19	60889163	60889363	+	924.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-486.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	13.33	10.82	10.27	14.88	17.18	14.11	15.28	22.04	6.1	4.52	16.08	4.7
Merged-chr7-121280392-2	chr7	121280282	121280482	+	924.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-111914.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	2.42	4.78	4.56	8.85	9.82	13.17	11.96	15.11	14.95	19.58	6.03	8.77
Merged-chr6-86503691-3	chr6	86503590	86503790	+	924.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15463.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	18.17	22.13	11.98	16.89	11.86	11.6	9.97	10.4	15.14	8.03	16.08	11.28
Merged-chr2-164085899-3	chr2	164085785	164085985	+	924.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	11707.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	18.98	10.06	13.12	16.49	17.18	10.66	23.92	23.66	5.31	5.52	18.59	13.47
Merged-chr6-124202357-3	chr6	124202260	124202460	+	924.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001104642, intron 3 of 5)	intron (NM_001104642, intron 3 of 5)	29424.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	10.09	9.31	19.4	19.31	21.27	14.11	7.64	22.85	15.14	16.57	20.1	12.53
Merged-chr1-135669994-3	chr1	135669903	135670103	+	924.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50060.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	28.67	10.31	19.97	9.25	24.96	19.13	19.27	23.38	17.51	15.57	27.64	29.76
Merged-chr9-123935566-3	chr9	123935453	123935653	+	924.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33139.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	18.98	10.82	52.48	16.09	22.5	26.65	27.9	38.16	31.86	9.54	17.59	11.59
Merged-chr12-85146535-2	chr12	85146433	85146633	+	924.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	4731.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	16.15	4.28	14.26	13.67	13.5	5.64	4.65	10.01	6.29	7.03	7.03	6.58
Merged-chr12-12301387-2	chr12	12301281	12301481	+	924.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39242.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.46	7.55	6.28	14.48	22.91	15.37	4.65	16.82	15.93	27.11	24.12	11.28
Merged-chr9-90107142-2	chr9	90107038	90107238	+	924.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	7682.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.44	3.02	13.69	5.23	18.41	10.03	2.66	7.04	19.67	22.09	20.1	12.84
Merged-chr2-155826074-2	chr2	155825971	155826171	+	924.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010579, intron 2 of 5)	intron (NM_010579, intron 2 of 5)	854.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	11.71	9.56	14.83	3.22	7.36	11.92	1.0	3.59	14.16	19.58	19.09	6.27
Merged-chr15-78594982-3	chr15	78594897	78595097	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-2050.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	10.5	9.31	7.42	4.42	21.68	15.68	12.62	12.84	19.67	16.07	17.59	11.9
Merged-chr9-35038506-3	chr9	35038412	35038612	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78216.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	12.11	14.09	13.69	4.83	9.41	17.87	13.29	11.8	24.98	22.59	19.6	13.47
Merged-chr7-89269906-3	chr7	89269807	89270007	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68880.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	10.5	8.8	15.4	11.66	17.18	20.07	15.61	28.18	20.06	13.05	18.09	12.84
Merged-chr2-4593632-3	chr2	4593530	4593730	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	33876.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	12.11	9.81	10.27	4.42	18.0	14.11	11.63	21.95	26.95	34.14	27.64	8.14
Merged-chr18-84849906-3	chr18	84849817	84850017	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1421.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.86	10.31	14.26	20.11	36.41	32.93	19.6	21.0	28.32	50.71	37.18	17.23
Merged-chr9-44587472-2	chr9	44587374	44587574	+	924.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17418.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	8.08	3.52	7.99	3.22	19.64	23.52	14.62	4.57	10.23	11.05	11.56	3.76
Merged-chr12-112761293-1	chr12	112761193	112761393	+	924.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	638.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	6.86	10.31	1.14	2.01	16.36	18.19	3.99	6.11	5.9	9.54	7.03	5.01
Merged-chr11-82100401-3	chr11	82100308	82100508	+	924.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1437.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	12.92	11.07	17.68	15.28	10.23	26.34	19.93	18.64	23.41	22.09	29.14	10.02
Merged-chr12-112688623-3	chr12	112688592	112688792	+	924.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9852.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	11.31	16.6	6.85	20.11	15.14	24.46	11.63	16.46	13.18	8.03	13.06	15.04
Merged-chr12-100505627-3	chr12	100505523	100505723	+	924.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	15199.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	22.61	14.09	47.92	22.52	31.91	19.44	14.62	30.08	16.92	9.54	33.16	8.77
Merged-chr2-52931573-2	chr2	52931480	52931680	+	924.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	ORR1B2|LTR|ERVL-MaLR	73712.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.44	5.03	15.97	5.23	4.09	11.6	4.32	10.23	14.55	5.02	22.11	7.83
Merged-chr1-55488462-3	chr1	55488358	55488558	+	924.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	82512.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	10.9	11.82	33.66	10.46	47.87	27.59	22.59	41.94	31.27	22.59	28.64	20.05
Merged-chr12-85490562-3	chr12	85490465	85490665	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16675.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	16.56	8.8	22.82	11.66	18.41	23.83	10.63	24.62	24.78	37.66	30.65	8.77
Merged-chr17-83830734-3	chr17	83830650	83830850	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025325)	TTS (NM_025325)	16040.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	18.98	27.92	31.95	19.71	15.55	10.35	8.64	20.33	15.74	11.55	31.66	16.6
Merged-chr11-49236058-3	chr11	49235969	49236169	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8122.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	11.71	11.57	25.67	34.99	13.09	7.53	9.3	15.11	11.8	6.03	14.57	10.34
Merged-chr2-125123211-3	chr2	125123128	125123328	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162418, intron 1 of 14)	CpG	432.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	13.73	10.56	27.38	9.65	9.41	12.54	9.3	9.53	18.88	16.07	23.62	16.29
Merged-chr5-16047534-3	chr5	16047420	16047620	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	112829.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	11.31	10.56	20.54	9.25	41.32	28.54	34.55	48.11	28.52	39.16	63.31	13.78
Merged-chr1-88631677-2	chr1	88631567	88631767	+	924.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70524.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	1.62	4.02	5.7	2.41	10.23	7.53	13.62	12.45	13.37	7.53	15.07	6.89
Merged-chr12-35132982-3	chr12	35132890	35133090	+	924.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 21 of 25)	intron (NM_001014973, intron 21 of 25)	61907.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	25.44	25.15	37.08	22.52	16.36	21.32	9.63	27.81	38.35	9.04	15.58	15.98
Merged-chr3-115714364-1	chr3	115714264	115714464	+	924.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007901, intron 1 of 1)	intron (NM_007901, intron 1 of 1)	691.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.42	4.53	6.28	6.44	11.05	21.95	9.63	21.48	5.9	5.52	7.54	0.63
Merged-chr5-72188313-3	chr5	72188208	72188408	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15021.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.25	6.29	18.83	15.69	9.0	14.74	15.94	19.79	8.06	9.04	20.6	18.17
Merged-chr12-79072716-3	chr12	79072620	79072820	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181073, intron 20 of 28)	intron (NM_181073, intron 20 of 28)	16950.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	11.31	12.07	9.13	15.69	24.96	12.54	14.62	23.94	17.31	12.55	24.12	9.71
Merged-chr11-68441152-3	chr11	68441050	68441250	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	9025.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	8.48	19.12	15.4	4.83	19.64	27.91	19.27	12.2	29.7	17.07	24.62	13.78
Merged-chr9-55311740-3	chr9	55311635	55311835	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15178.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	14.13	16.35	21.11	7.64	17.59	29.48	9.3	18.06	20.46	23.1	16.58	13.47
Merged-chr2-143867506-3	chr2	143867476	143867676	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4403.0	NM_001291061	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	6.86	16.1	7.99	11.26	9.41	5.33	16.94	10.49	9.64	11.05	14.57	6.89
Merged-chr3-87526412-3	chr3	87526329	87526529	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286844, intron 1 of 4)	intron (NM_001286844, intron 1 of 4)	851.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	16.56	17.1	31.95	9.25	18.0	16.62	13.29	17.27	19.67	8.54	7.03	13.16
Merged-chr10-80744472-3	chr10	80744386	80744586	+	924.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2211.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	12.92	5.28	15.97	13.27	22.09	21.64	16.61	12.64	26.55	13.56	36.68	18.17
Merged-chr2-127362598-3	chr2	127362500	127362700	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-686.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	14.94	9.81	7.99	9.65	17.18	12.86	7.64	11.24	15.34	22.59	26.13	10.34
Merged-chr2-25582583-3	chr2	25582476	25582676	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2477.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	16.56	12.58	9.7	6.44	48.27	55.19	25.58	42.2	67.66	47.7	66.33	31.95
Merged-chr9-56266683-3	chr9	56266585	56266785	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105615.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	22.21	10.06	7.99	24.53	20.05	15.37	9.3	19.12	22.23	17.57	20.1	11.28
Merged-chr13-34332922-3	chr13	34332840	34333040	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	12242.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.25	6.29	18.83	23.33	15.96	14.74	16.94	26.02	13.18	13.05	15.07	14.72
Merged-chr5-125189728-4	chr5	125189603	125189803	+	924.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10489.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	12.52	8.55	6.85	9.25	7.77	14.11	8.64	6.17	13.96	9.54	7.54	10.65
Merged-chr11-94328414-3	chr11	94328337	94328537	+	924.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027799, intron 1 of 4)	CpG	436.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	11.31	11.82	8.56	8.04	12.68	20.07	11.29	11.47	10.03	21.09	8.54	12.22
Merged-chr10-80663782-3	chr10	80663673	80663873	+	924.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6702.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	25.44	35.97	10.27	6.03	13.91	42.65	9.63	15.87	24.19	33.64	12.06	10.02
Merged-chr5-124476007-3	chr5	124475907	124476107	+	924.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	2228.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	13.33	10.31	10.84	12.47	9.82	10.66	11.29	12.5	19.28	29.62	20.6	3.13
Merged-chr10-128626376-3	chr10	128626296	128626496	+	924.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013765, intron 1 of 3)	CpG	110.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	12.52	17.1	10.27	22.93	12.68	14.42	30.23	13.4	19.47	21.59	28.64	22.56
Merged-chr7-142284829-3	chr7	142284755	142284955	+	924.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-10492.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	22.21	9.81	7.42	12.07	14.73	17.56	10.63	5.66	16.33	8.54	9.55	7.83
Merged-chr7-19023554-3	chr7	19023431	19023631	+	924.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	8.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	15.75	12.32	0.57	7.24	7.77	5.02	7.64	7.6	16.52	14.06	15.07	11.28
Merged-chrX-47391704-3	chrX	47391603	47391803	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	500910.0	NM_053123	93761.0	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	11.71	4.53	2.85	12.07	33.14	33.87	38.86	40.21	30.29	22.09	21.1	21.93
Merged-chr3-55101331-3	chr3	55101223	55101423	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D1|LTR|ERVK	-10785.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	10.09	19.37	21.68	15.28	13.91	22.58	11.63	11.38	15.34	26.61	16.58	19.11
Merged-chr6-134791903-2	chr6	134791797	134791997	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-463.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	7.27	6.79	6.85	8.45	7.36	6.27	6.64	9.34	14.75	15.06	16.58	18.48
Merged-chr17-5232467-1	chr17	5232367	5232567	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	186300.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	1.62	3.27	20.54	4.42	5.32	10.98	1.99	8.16	3.54	3.51	4.02	7.52
Merged-chr5-88399987-3	chr5	88399900	88400100	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23892.0	NM_027793	71421.0	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding	11.31	22.39	23.39	22.52	13.5	18.5	17.27	26.07	29.11	20.08	30.15	8.77
Merged-chr11-17159920-3	chr11	17159811	17160011	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	CpG	613.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	15.34	8.55	11.41	4.42	13.5	15.99	10.63	12.17	12.98	14.06	18.09	13.16
Merged-chr12-85914501-1	chr12	85914401	85914601	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 19 of 32)	intron (NM_001347395, intron 19 of 32)	89551.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	2.42	2.77	7.42	4.83	11.86	5.64	8.64	10.15	8.65	2.51	7.03	5.01
Merged-chr15-98108494-3	chr15	98108393	98108593	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163487)	promoter-TSS (NM_001163487)	22.0	NM_001163487	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	12.11	11.32	5.7	7.64	13.09	14.74	10.63	13.49	11.41	5.52	7.03	8.77
Merged-chr13-23517230-3	chr13	23517152	23517352	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	-13792.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	20.19	14.09	14.83	19.31	18.0	12.86	10.3	11.13	20.46	13.05	11.05	12.84
Merged-chr13-93995573-1	chr13	93995473	93995673	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62223.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.81	5.03	4.56	2.41	10.64	3.14	14.62	10.54	7.08	2.01	3.01	6.27
Merged-chr18-69680829-1	chr18	69680729	69680929	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 17 of 19)	intron (NM_001361128, intron 17 of 19)	-244730.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	6.86	2.01	3.42	4.83	18.41	10.35	7.97	18.7	7.28	3.51	15.07	2.51
Merged-chr13-6636733-1	chr13	6636633	6636833	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	12038.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	6.46	6.04	3.42	6.03	4.5	10.03	3.65	7.43	5.7	3.51	6.53	5.95
Merged-chr7-129331980-3	chr7	129331869	129332069	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	74875.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	5.25	9.06	14.83	24.53	18.41	16.93	20.26	37.07	19.28	15.06	15.58	23.18
Merged-chr1-166137710-3	chr1	166137607	166137807	+	923.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	7486.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	16.15	14.84	13.69	8.04	37.23	23.83	23.25	39.22	23.8	20.59	13.57	20.68
Merged-chr11-5511556-3	chr11	5511452	5511652	+	923.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9089.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	10.09	9.31	26.24	13.27	24.96	20.07	28.23	49.21	25.37	17.57	23.11	15.04
Merged-chr17-43040738-3	chr17	43040632	43040832	+	923.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	RSINE1|SINE|B4	24177.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	18.98	20.37	10.84	21.32	18.0	21.32	19.93	21.31	22.62	27.62	31.66	12.84
Merged-chr3-10009594-3	chr3	10009493	10009693	+	923.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2992.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	8.48	14.59	14.83	7.64	20.05	16.93	11.29	17.55	27.14	19.58	20.6	13.47
Merged-chr5-116011890-3	chr5	116011797	116011997	+	923.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12531.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	20.19	10.82	20.54	23.33	24.14	25.4	30.56	45.06	15.54	12.55	27.13	16.29
Merged-chr12-108333634-2	chr12	108333535	108333735	+	923.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-681.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	16.96	9.81	26.81	22.12	9.82	14.74	9.97	15.42	6.1	5.02	6.03	5.95
Merged-chr6-136714334-3	chr6	136714225	136714425	+	923.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 19 of 25)	MIR3|SINE|MIR	-52432.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	14.94	7.8	21.11	20.11	22.91	11.6	14.62	22.68	18.1	11.05	22.11	9.71
Merged-chr4-89129538-3	chr4	89129463	89129663	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1337.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	10.9	12.07	4.56	10.86	11.86	13.48	22.92	20.72	13.18	19.58	17.59	20.99
Merged-chr10-24911434-3	chr10	24911325	24911525	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105870)	TTS (NR_105870)	761.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	10.09	8.8	13.69	15.28	34.77	23.2	39.2	38.41	127.26	142.1	164.31	87.4
Merged-chr15-64261782-3	chr15	64261685	64261885	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	50888.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	9.69	11.32	13.69	11.26	22.09	25.71	15.28	27.28	24.39	21.59	29.65	14.1
Merged-chr3-59265058-3	chr3	59264951	59265151	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177855, exon 36 of 44)	exon (NM_177855, exon 36 of 44)	-2066.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	18.57	13.08	14.26	10.46	13.5	19.13	12.95	14.58	17.31	13.05	31.15	13.16
Merged-chr17-63493310-3	chr17	63493198	63493398	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7282.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	12.92	6.54	15.4	12.07	17.18	13.48	6.64	13.49	15.14	4.52	17.59	5.33
Merged-chr13-49684149-3	chr13	49684049	49684249	+	923.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2019.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	20.59	14.84	14.26	21.72	18.0	14.42	5.65	15.31	17.11	17.07	23.11	9.08
Merged-chr11-79520890-3	chr11	79520770	79520970	+	923.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2892.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	10.5	20.37	23.96	7.64	15.96	12.86	5.98	7.4	16.72	24.1	15.58	13.47
Merged-chr13-97548731-3	chr13	97548646	97548846	+	923.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11254.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	10.5	16.35	17.11	13.67	33.96	18.19	29.9	39.81	20.26	11.05	19.09	17.54
Merged-chr1-134081299-3	chr1	134081190	134081390	+	923.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2135.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	10.5	9.81	19.97	20.91	5.73	10.03	15.28	13.82	16.92	6.03	17.59	19.74
Merged-chr2-90475019-3	chr2	90474918	90475118	+	923.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4156.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	12.92	15.34	15.97	10.05	10.64	10.35	2.99	13.21	16.92	26.61	24.12	8.14
Merged-chr4-108458301-2	chr4	108458195	108458395	+	923.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1131.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	7.27	19.37	8.56	6.03	33.14	30.73	7.64	9.42	21.83	27.62	11.05	4.07
Merged-chr2-112255315-2	chr2	112255199	112255399	+	923.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172521, intron 2 of 6)	intron (NM_172521, intron 2 of 6)	3992.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	1.62	3.27	6.85	4.02	11.45	4.08	7.64	9.7	12.98	3.51	16.08	5.95
Merged-chr10-91195256-3	chr10	91195158	91195358	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-23639.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	6.06	9.06	4.56	10.05	15.14	21.32	13.29	13.04	19.87	11.05	33.67	10.96
Merged-chr5-136088031-3	chr5	136087931	136088131	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4115.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	22.21	26.16	21.68	12.87	27.41	42.65	9.63	12.36	24.39	24.6	19.6	5.33
Merged-chr17-12371459-3	chr17	12371358	12371558	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7151.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	19.38	28.67	10.84	8.85	20.86	59.89	18.27	15.67	36.78	40.67	22.11	12.22
Merged-chr7-144895980-2	chr7	144895886	144896086	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-546.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	29.88	31.69	23.39	16.09	18.0	18.19	10.96	10.71	13.37	6.53	4.02	5.64
Merged-chr8-56896533-1	chr8	56896433	56896633	+	923.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	345399.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.81	2.52	2.28	4.02	15.96	11.6	13.29	14.8	2.16	3.01	3.01	1.88
Merged-chr14-64637600-3	chr14	64637497	64637697	+	923.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14934.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	13.73	11.32	25.1	11.26	9.0	27.59	19.6	42.9	16.72	12.05	25.63	21.3
Merged-chr4-59806771-3	chr4	59806682	59806882	+	923.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	1132.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	15.34	12.07	8.56	14.48	34.77	21.64	13.29	21.28	25.18	14.56	15.07	18.17
Merged-chr5-117363272-3	chr5	117363151	117363351	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	5946.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	23.02	12.07	15.97	30.97	18.0	13.17	9.97	26.36	18.29	10.04	17.08	11.59
Merged-chr2-116952909-3	chr2	116952812	116953012	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	52760.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	15.75	9.06	10.27	6.03	16.77	24.46	15.94	4.74	25.96	22.09	20.6	4.07
Merged-chr3-83995527-3	chr3	83995424	83995624	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	44637.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	26.25	23.9	18.25	14.48	15.55	28.85	28.57	14.3	19.67	9.04	21.61	4.7
Merged-chr17-15577524-3	chr17	15577422	15577622	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14199.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	23.82	16.35	29.66	28.15	20.86	28.85	13.29	31.32	19.67	11.05	22.11	9.4
Merged-chr5-96968741-3	chr5	96968659	96968859	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28930.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	13.33	11.82	20.54	18.9	13.09	11.6	8.64	13.29	15.34	10.04	13.57	8.77
Merged-chr2-16170594-2	chr2	16170476	16170676	+	923.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-185728.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	8.08	7.29	7.99	22.52	12.27	11.29	8.64	29.72	24.78	16.57	33.16	17.86
Merged-chr7-35145312-1	chr7	35145212	35145412	+	923.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26019.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.63	4.53	1.14	9.25	11.45	5.96	7.97	15.67	8.65	8.03	12.56	5.64
Merged-chr11-97363522-3	chr11	97363430	97363630	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	979.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	13.33	9.31	23.39	13.27	27.41	26.97	12.95	20.05	22.42	13.56	23.11	14.1
Merged-chr17-29082138-3	chr17	29082033	29082233	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3007.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	26.65	31.94	25.1	10.46	22.5	48.92	12.29	18.84	33.04	35.65	14.57	11.9
Merged-chr15-30617057-3	chr15	30616957	30617157	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	MLT1B|LTR|ERVL-MaLR	-422069.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	1.62	12.58	13.69	8.04	17.18	15.99	9.3	22.63	17.51	13.05	17.59	12.53
Merged-chr1-120443485-3	chr1	120443382	120443582	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	61542.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	14.13	14.84	34.8	32.98	9.82	7.84	19.93	17.33	24.0	21.09	17.08	19.11
Merged-chr6-91693645-3	chr6	91693558	91693758	+	923.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	9591.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	15.75	23.39	15.97	24.94	19.23	25.71	6.64	23.36	23.41	18.58	24.62	8.46
Merged-chr1-159198808-3	chr1	159198725	159198925	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-33375.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	14.13	8.8	11.41	10.46	29.86	53.62	36.21	32.05	21.44	50.21	42.21	18.17
Merged-chr9-37347255-3	chr9	37347144	37347344	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081429, intron 2 of 15)	intron (NM_001081429, intron 2 of 15)	1148.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	22.21	16.1	9.13	11.26	16.36	16.31	11.96	16.37	21.64	24.6	21.1	16.29
Merged-chr13-107888699-3	chr13	107888602	107888802	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	CpG	1362.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	18.57	8.55	11.98	14.88	16.77	14.11	19.6	13.46	23.41	26.61	30.15	20.05
Merged-chr5-122280809-3	chr5	122280694	122280894	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3604.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	19.38	6.04	18.25	16.49	20.86	16.93	11.63	18.7	12.39	7.03	16.08	11.59
Merged-chr1-135688883-1	chr1	135688783	135688983	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-31180.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	12.92	10.06	11.41	16.09	0.82	0.94	1.66	2.38	0.79	5.02	2.01	1.25
Merged-chr15-97312105-3	chr15	97312004	97312204	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-64817.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	14.94	19.37	19.4	20.91	7.77	27.59	22.26	35.13	21.44	12.05	16.08	5.33
Merged-chr15-67147536-1	chr15	67147436	67147636	+	923.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	29346.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.23	3.02	1.71	2.41	11.45	15.05	18.93	9.34	3.34	3.01	17.59	4.7
Merged-chr7-63755739-3	chr7	63755634	63755834	+	923.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161123.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	26.65	8.55	12.55	14.48	7.77	25.09	9.97	21.39	13.77	20.08	27.64	13.78
Merged-chr5-36751835-3	chr5	36751724	36751924	+	923.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3145.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	10.9	10.06	19.4	11.66	16.77	19.76	11.29	11.69	15.74	12.55	17.08	13.78
Merged-chr2-19038381-3	chr2	19038281	19038481	+	923.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40062.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	16.15	12.07	15.97	28.96	18.41	13.48	5.98	19.51	26.95	12.05	14.57	19.11
Merged-chr10-19570966-3	chr10	19570872	19571072	+	923.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-20977.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	10.9	12.07	14.26	7.64	15.96	18.81	11.29	16.23	12.78	20.08	15.58	8.77
Merged-chr9-56924781-3	chr9	56924689	56924889	+	923.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	3582.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	21.8	18.86	22.25	18.9	35.59	28.54	15.28	34.21	20.46	16.07	8.04	10.02
Merged-chr14-74913784-3	chr14	74913678	74913878	+	923.521423	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34099.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	16.56	8.3	18.25	10.46	2.86	11.29	11.63	8.19	10.82	12.55	15.58	9.71
Merged-chr17-44710066-3	chr17	44709965	44710165	+	923.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	26111.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	23.82	8.55	37.08	24.94	27.0	20.38	25.91	28.93	16.72	12.55	36.18	8.77
Merged-chr12-91312796-1	chr12	91312696	91312896	+	923.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 10 of 25)	L2a|LINE|L2	71613.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	3.63	2.77	0.0	2.01	8.18	4.08	10.63	16.01	6.88	4.52	4.52	5.33
Merged-chr19-4262983-3	chr19	4262861	4263061	+	923.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105951)	TTS (NR_105951)	917.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	11.31	13.58	14.83	12.47	26.59	13.8	8.64	15.81	21.24	13.05	19.6	15.35
Merged-chr9-104234536-2	chr9	104234472	104234672	+	923.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28358.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	3.23	6.54	5.13	10.05	5.73	6.27	8.64	22.04	19.67	16.57	22.11	18.8
Merged-chr17-72838341-3	chr17	72838214	72838414	+	923.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	266.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	16.15	8.55	8.56	10.05	17.59	11.92	14.28	11.47	15.74	16.57	19.6	9.71
Merged-chr7-135581282-1	chr7	135581182	135581382	+	923.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-12199.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	2.42	3.02	9.7	4.83	9.82	12.54	10.63	10.96	3.34	4.02	2.01	1.88
Merged-chr8-3754478-3	chr8	3754399	3754599	+	923.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-5515.0	NM_133238	170786.0	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	68.65	62.88	66.17	47.86	11.86	32.3	11.29	25.54	18.1	43.68	19.09	35.71
Merged-chr1-131937879-3	chr1	131937788	131937988	+	923.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25027.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	10.5	13.83	6.85	2.82	10.64	13.8	5.98	15.67	19.28	16.57	11.05	11.9
Merged-chr3-108148037-3	chr3	108147931	108148131	+	923.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1879.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	21.0	17.86	9.13	16.49	14.73	19.76	6.98	10.09	18.1	23.1	18.59	17.23
Merged-chr9-61424456-3	chr9	61424342	61424542	+	923.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	52076.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	18.17	12.32	13.12	10.05	20.05	28.85	14.28	16.63	19.47	22.59	26.63	14.41
Merged-chr10-80159271-3	chr10	80159183	80159383	+	923.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021565)	TTS (NM_021565)	-8556.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	12.52	16.35	13.12	4.42	11.45	16.31	8.3	6.95	12.19	19.58	10.55	9.08
Merged-chr6-13598512-4	chr6	13598465	13598665	+	923.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	9533.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	13.33	10.82	3.42	3.22	10.64	21.64	13.29	11.13	16.92	11.55	13.06	4.7
Merged-chr5-87056039-2	chr5	87055952	87056152	+	923.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	36503.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	2.42	1.01	2.85	4.42	10.64	11.92	20.26	14.5	13.77	12.55	19.09	20.36
Merged-chr3-27982725-3	chr3	27982597	27982797	+	923.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164056, intron 2 of 26)	intron (NM_001164056, intron 2 of 26)	-1474.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	16.15	12.07	5.13	9.65	10.23	12.23	9.63	13.96	15.54	15.06	11.56	8.14
Merged-chr9-109118288-3	chr9	109118189	109118389	+	923.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172775, exon 38 of 38)	3' UTR (NM_172775, exon 38 of 38)	22853.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	14.94	8.55	5.13	17.29	23.73	18.19	27.9	32.55	13.77	24.1	17.59	8.77
Merged-chr12-119386455-3	chr12	119386357	119386557	+	923.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56953.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	15.75	11.07	14.83	18.9	22.09	21.01	12.62	17.36	21.05	26.61	16.58	17.23
Merged-chr18-30087458-2	chr18	30087368	30087568	+	923.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185397.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	13.33	13.08	9.13	13.27	46.23	34.49	38.2	59.13	4.13	5.02	5.53	2.82
Merged-chr5-41627702-2	chr5	41627606	41627806	+	923.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310589, intron 6 of 6)	intron (NM_001310589, intron 6 of 6)	79985.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.44	3.77	6.85	5.63	11.45	5.64	12.29	14.07	21.44	27.62	34.67	12.84
Merged-chr7-45897411-2	chr7	45897291	45897491	+	923.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	322.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	12.92	18.11	7.42	10.05	16.36	10.66	10.3	11.61	14.95	7.03	21.1	8.77
Merged-chr11-70185295-2	chr11	70185193	70185393	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	18670.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	12.11	3.27	16.54	4.42	11.86	1.25	8.64	14.02	6.88	4.02	4.52	16.92
Merged-chr2-75773670-3	chr2	75773578	75773778	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58499.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	22.21	6.29	9.13	25.74	30.27	25.4	20.59	21.0	26.16	25.11	25.12	18.8
Merged-chr13-83067674-3	chr13	83067575	83067775	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-369342.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	14.54	18.61	17.11	39.42	18.41	16.31	8.97	29.13	24.78	12.55	20.6	24.75
Merged-chr12-32245519-3	chr12	32245465	32245665	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-36916.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	13.73	13.83	10.27	12.47	13.5	9.72	15.94	13.32	12.19	3.01	9.04	6.27
Merged-chr5-72580653-1	chr5	72580553	72580753	+	923.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001024147)	TTS (NM_001024147)	431.0	NM_174877	317755.0	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	3.23	9.06	7.42	6.44	11.05	12.23	12.95	10.91	5.31	10.04	5.53	5.33
Merged-chr1-160251608-1	chr1	160251508	160251708	+	923.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 3 of 8)	intron (NM_001038621, intron 3 of 8)	-38716.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	3.23	5.53	3.42	4.02	15.55	5.33	9.63	16.37	2.75	1.51	1.0	2.82
Merged-chr17-36951097-3	chr17	36951014	36951214	+	923.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029632, intron 1 of 2)	intron (NM_029632, intron 1 of 2)	678.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	22.21	17.86	7.99	10.46	15.14	17.56	10.63	11.21	19.08	12.55	23.62	15.66
Merged-chr7-67962060-3	chr7	67961975	67962175	+	923.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	9818.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	12.11	11.82	22.25	10.86	20.86	19.44	8.97	26.16	20.06	17.57	23.62	8.46
Merged-chr7-64141014-3	chr7	64140909	64141109	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12826.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	16.15	12.32	37.08	15.28	19.64	12.23	9.97	20.16	34.22	13.05	23.62	13.78
Merged-chrX-9452577-3	chrX	9452483	9452683	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 6 of 12)	intron (NM_007807, intron 6 of 12)	16741.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	18.57	12.07	6.85	10.05	15.14	21.95	7.97	18.06	21.83	8.03	24.12	10.34
Merged-chr19-41333104-3	chr19	41333009	41333209	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	51961.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	14.94	18.11	36.51	15.69	7.77	12.86	10.3	20.69	12.39	14.06	26.13	10.65
Merged-chr14-7958799-3	chr14	7958697	7958897	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35385.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	10.09	20.63	11.41	7.64	18.0	19.44	6.64	5.38	24.0	20.08	20.6	5.01
Merged-chr7-63941703-3	chr7	63941593	63941793	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2778.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	17.77	23.9	15.4	6.03	13.91	26.65	14.95	10.63	28.13	31.63	34.67	11.59
Merged-chr15-67048864-1	chr15	67048764	67048964	+	923.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79223.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	3.23	4.78	7.99	7.24	12.27	10.66	7.31	13.77	2.95	2.01	4.02	3.76
Merged-chr1-152573194-3	chr1	152573015	152573215	+	923.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	52102.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.08	2.52	15.4	8.45	12.68	8.15	16.61	9.08	10.03	7.53	17.59	11.28
Merged-chr1-34467700-3	chr1	34467576	34467776	+	923.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	C-rich|Low_complexity|Low_complexity	7930.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	19.38	12.07	17.11	9.25	26.59	20.7	10.3	17.19	25.77	26.11	13.57	18.17
Merged-chr15-78931780-3	chr15	78931663	78931863	+	923.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3170.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	19.38	15.34	10.84	11.66	26.18	46.72	9.97	17.05	18.29	22.09	23.11	10.02
Merged-chr1-152606385-3	chr1	152606296	152606496	+	923.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	L3|LINE|CR1	18821.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	27.86	8.8	25.1	17.29	13.91	24.77	19.93	20.19	17.11	14.06	11.56	5.01
Merged-chr1-37419609-3	chr1	37419528	37419728	+	923.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198006, exon 3 of 3)	3' UTR (NM_198006, exon 3 of 3)	10475.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	5.65	15.09	13.69	13.67	20.46	23.2	7.97	14.36	20.46	32.64	29.65	18.8
Merged-chr14-51084030-3	chr14	51083942	51084142	+	923.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7035.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	23.42	19.12	15.97	21.72	22.09	16.93	8.97	13.96	21.05	17.07	16.58	6.89
Merged-chr15-8710457-3	chr15	8710329	8710529	+	923.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	378.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	12.52	15.09	10.84	8.85	11.45	8.15	10.3	17.22	18.1	17.57	18.09	10.65
Merged-chr7-110002220-3	chr7	110002127	110002327	+	923.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037959, intron 2 of 2)	RLTR49|LTR|ERVK	4419.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	25.84	10.31	10.27	12.07	19.23	21.01	23.58	34.15	29.7	17.07	30.15	20.36
Merged-chr11-74491320-3	chr11	74491223	74491423	+	923.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	MIRb|SINE|MIR	98835.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	13.33	10.82	13.12	21.32	12.27	22.26	11.63	17.94	26.36	18.58	25.12	11.59
Merged-chr11-3131631-2	chr11	3131505	3131705	+	923.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_030207)	TTS (NM_030207)	7584.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	10.09	8.3	4.56	7.64	5.32	14.42	10.96	8.05	0.0	0.0	0.0	0.63
Merged-chr1-177139820-3	chr1	177139714	177139914	+	923.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	RMER19B|LTR|ERVK	108953.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	23.42	15.09	21.68	28.56	17.59	11.29	6.64	26.97	22.42	10.54	14.07	13.16
Merged-chr8-108783376-3	chr8	108783275	108783475	+	923.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	68731.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	24.63	7.55	19.97	25.74	14.32	12.86	11.29	25.4	14.36	9.04	14.07	7.21
Merged-chr3-88649539-3	chr3	88649455	88649655	+	923.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3587.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	10.9	12.83	13.69	16.89	14.73	18.5	17.61	16.68	17.51	6.03	11.05	17.23
Merged-chr1-54923553-3	chr1	54923466	54923666	+	923.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	2821.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	21.8	13.08	18.83	16.89	16.77	11.6	11.29	22.23	11.6	7.03	18.59	7.21
Merged-chr1-180423410-3	chr1	180423308	180423508	+	923.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	60096.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	20.59	16.1	19.97	5.23	13.91	25.71	29.56	17.07	17.7	27.62	17.08	10.34
Merged-chr10-19614534-3	chr10	19614429	19614629	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7499.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	25.84	23.9	16.54	22.52	8.18	21.01	15.61	26.66	20.26	8.03	23.62	9.71
Merged-chr18-9810363-1	chr18	9810263	9810463	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	102715.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	2.01	0.0	0.8	11.86	3.45	6.98	8.58	2.56	4.52	2.01	0.31
Merged-chr1-157380927-2	chr1	157380830	157381030	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-31422.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	6.46	3.77	14.83	8.04	35.59	37.94	30.23	43.01	12.19	7.53	15.07	10.65
Merged-chr14-114869548-1	chr14	114869448	114869648	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37583.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	4.85	5.28	7.42	16.89	4.91	8.78	12.95	19.96	1.77	0.5	7.54	1.57
Merged-chrX-166789172-1	chrX	166789072	166789272	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	127147.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	9.29	4.53	6.85	10.46	13.91	2.2	6.64	9.9	5.9	4.52	7.03	1.88
Merged-chr2-12745487-1	chr2	12745387	12745587	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178554.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.4	1.01	0.0	3.22	9.0	3.45	4.32	11.69	1.57	5.52	9.55	2.51
Merged-chr2-117984782-1	chr2	117984682	117984882	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	126420.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.85	1.01	6.85	7.24	5.32	9.72	4.98	11.5	9.44	6.03	6.53	10.02
Merged-chrX-159628901-1	chrX	159628801	159629001	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	1629.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	1.62	1.51	3.42	4.83	4.91	3.76	6.98	9.62	7.28	2.51	6.53	3.45
Merged-chr12-11178927-2	chr12	11178819	11179019	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25583.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	4.85	10.82	18.25	13.27	22.91	20.7	14.28	21.03	4.52	5.02	12.06	2.82
Merged-chrX-18161919-1	chrX	18161819	18162019	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009483)	promoter-TSS (NM_009483)	-656.0	NM_009483	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	4.04	9.56	5.7	14.08	6.95	8.47	7.97	3.2	14.36	10.54	8.54	9.4
Merged-chr12-79626375-2	chr12	79626262	79626462	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	MamRep137|DNA|TcMar-Tigger	298371.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	10.9	14.34	3.42	0.8	5.73	15.99	0.0	1.09	15.34	15.06	3.52	1.25
Merged-chr12-40200097-1	chr12	40199997	40200197	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001033437)	promoter-TSS (NM_001033437)	-782.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	9.69	10.31	1.14	2.82	3.27	11.6	1.0	3.5	3.74	5.02	5.02	2.82
Merged-chr12-87262865-3	chr12	87262762	87262962	+	922.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142581, intron 2 of 18)	MTD|LTR|ERVL-MaLR	1382.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	14.54	18.61	14.83	43.44	9.41	18.5	13.29	24.64	21.64	35.15	28.14	18.8
Merged-chr13-30612429-5	chr13	30612341	30612541	+	922.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2602.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	10.5	18.11	10.27	14.08	16.36	12.86	13.62	14.75	7.67	11.05	15.07	8.46
Merged-chr2-130291644-3	chr2	130291527	130291727	+	922.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4312.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	16.15	21.88	19.97	14.48	19.64	22.26	15.28	16.01	17.51	20.08	19.6	12.53
Merged-chr5-4758122-3	chr5	4758028	4758228	+	922.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021457)	promoter-TSS (NM_021457)	88.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	16.15	6.54	11.98	25.34	37.64	26.03	31.89	54.87	24.39	30.13	44.22	12.22
Merged-chrX-48143692-3	chrX	48143659	48143859	+	922.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2677.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	5.65	12.07	19.4	2.82	13.5	10.03	8.97	8.64	11.6	9.54	13.57	9.08
Merged-chr17-84028669-3	chr17	84028588	84028788	+	922.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30136.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	12.11	15.34	23.96	14.88	19.64	21.01	8.3	7.57	25.57	7.53	26.13	8.46
Merged-chr6-15727778-3	chr6	15727661	15727861	+	922.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7100.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	10.9	12.58	15.4	6.84	20.05	20.07	14.95	18.03	34.03	31.13	18.09	15.98
Merged-chr6-29736181-3	chr6	29736094	29736294	+	922.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176996, exon 1 of 12)	exon (NM_176996, exon 1 of 12)	697.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	24.63	15.85	3.99	20.11	13.91	16.62	18.27	18.93	13.96	12.05	23.11	8.77
Merged-chr19-30031165-3	chr19	30031099	30031299	+	922.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144873, intron 1 of 15)	CpG	686.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	4.04	15.85	6.28	20.11	10.64	7.21	10.63	11.02	19.28	17.07	14.07	12.84
Merged-chr4-53397501-3	chr4	53397413	53397613	+	922.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-42900.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	11.31	9.81	20.54	11.26	19.64	14.42	16.28	15.48	18.49	26.11	16.58	9.71
Merged-chr15-63545840-2	chr15	63545716	63545916	+	922.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-66208.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.42	5.03	0.57	6.84	11.05	10.98	16.61	21.87	19.47	14.06	18.59	9.08
Merged-chr3-100439313-3	chr3	100439217	100439417	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12912.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	13.73	6.54	11.98	6.03	9.0	15.37	7.31	16.29	32.06	19.58	20.1	20.36
Merged-chr14-54376095-3	chr14	54375999	54376199	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	15258.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	17.36	17.86	14.26	14.08	18.41	19.44	11.29	20.41	14.16	8.03	22.11	8.77
Merged-chr7-26244041-3	chr7	26243943	26244143	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22788.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	23.42	10.31	15.97	19.31	40.09	18.5	25.24	36.45	29.11	22.09	12.56	10.02
Merged-chr2-181659743-3	chr2	181659633	181659833	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11907.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	15.34	9.31	12.55	13.27	22.09	18.81	11.96	19.54	21.44	21.09	26.13	15.04
Merged-chr8-3631739-3	chr8	3631622	3631822	+	922.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357168, intron 1 of 18)	intron (NM_001357168, intron 1 of 18)	613.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	10.9	8.55	7.42	12.07	12.68	19.13	15.28	22.57	18.69	14.06	40.7	18.17
Merged-chr9-25130592-3	chr9	25130479	25130679	+	922.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020586, exon 3 of 8)	exon (NM_020586, exon 3 of 8)	21202.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.85	5.03	22.25	16.09	20.05	8.15	7.97	15.93	11.21	8.03	15.58	4.39
Merged-chr13-54209618-3	chr13	54209543	54209743	+	922.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	17510.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	19.38	16.35	15.97	24.94	19.23	10.98	8.64	7.6	20.26	8.54	14.07	15.98
Merged-chr3-60486154-3	chr3	60486041	60486241	+	922.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	13311.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	17.36	7.55	16.54	17.7	23.73	23.83	5.98	30.14	42.68	31.63	18.59	23.81
Merged-chr7-101936140-3	chr7	101936027	101936227	+	922.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-2270.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	16.56	15.59	17.68	13.67	15.96	18.81	6.31	12.34	16.92	27.62	15.58	10.34
Merged-chr1-182506770-1	chr1	182506670	182506870	+	922.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	10840.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	1.21	5.28	10.27	0.4	11.45	12.86	5.65	9.7	8.85	8.54	9.55	6.89
Merged-chr12-82260335-3	chr12	82260231	82260431	+	922.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-51018.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	12.11	14.59	29.09	12.87	25.36	31.67	12.95	29.24	18.88	21.09	52.76	22.24
Merged-chr10-41594621-3	chr10	41594502	41594702	+	922.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 30 of 47)	MIRb|SINE|MIR	26586.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	15.34	21.13	26.24	24.13	11.86	11.29	6.98	16.32	19.67	10.54	10.55	12.22
Merged-chr10-14035017-3	chr10	14034865	14035065	+	922.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	MER20|DNA|hAT-Charlie	68586.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	12.11	5.79	13.69	20.51	11.86	10.66	16.61	34.51	17.7	12.05	29.14	20.99
Merged-chr3-129970138-3	chr3	129970003	129970203	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001293644, exon 1 of 7)	5' UTR (NM_001293644, exon 1 of 7)	103.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	11.71	11.82	6.85	5.23	13.09	10.66	8.3	13.85	11.8	15.57	17.08	11.28
Merged-chr2-73529441-3	chr2	73529364	73529564	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	23.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	14.54	9.31	7.99	14.48	13.5	16.62	20.26	23.58	9.24	19.08	19.6	15.66
Merged-chr6-100210884-3	chr6	100210807	100211007	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76451.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	12.52	9.81	6.85	10.86	18.0	10.03	17.61	14.61	10.62	15.57	15.58	9.08
Merged-chrX-142683137-3	chrX	142683020	142683220	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	1394.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	16.56	15.34	13.69	12.07	15.55	37.0	11.63	18.59	23.6	23.1	13.06	8.77
Merged-chr2-129595017-4	chr2	129594938	129595138	+	922.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355160)	promoter-TSS (NM_001355160)	-424.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	10.9	6.29	17.68	14.48	6.95	12.54	7.64	8.64	13.18	14.06	8.54	16.6
Merged-chr17-27954756-2	chr17	27954655	27954855	+	922.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45449.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	16.15	10.56	20.54	8.85	15.14	14.74	20.59	18.11	4.52	9.54	9.04	4.7
Merged-chr11-120903433-3	chr11	120903336	120903536	+	922.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 5 of 18)	intron (NM_027745, intron 5 of 18)	29436.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	16.56	8.55	9.7	8.04	20.46	8.15	9.63	5.97	9.44	13.56	12.56	4.7
Merged-chr4-102753551-3	chr4	102753441	102753641	+	922.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6594.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	13.33	14.34	23.39	12.47	9.82	10.35	15.61	17.47	19.47	5.52	15.07	10.65
Merged-chr2-140395925-1	chr2	140395825	140396025	+	922.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028387, intron 1 of 3)	CpG	490.0	NM_028387	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	3.63	2.01	1.14	0.0	10.64	5.33	13.95	10.4	6.49	8.03	4.52	2.51
Merged-chr1-24586915-1	chr1	24586815	24587015	+	922.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007733, intron 1 of 50)	CpG	522.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	1.01	0.0	0.8	0.82	4.08	3.65	6.31	3.54	3.01	4.02	4.39
Merged-chr8-111546466-1	chr8	111546366	111546566	+	922.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	8123.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	1.62	3.02	1.14	1.61	12.68	17.56	12.62	8.75	1.18	3.01	4.02	2.19
Merged-chr14-34343227-3	chr14	34343134	34343334	+	922.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008133, intron 12 of 12)	intron (NM_008133, intron 12 of 12)	-1821.0	NR_027380	100041231.0	Mm.425871	NR_027380		Gm3219	-	B-cell CLL/lymphoma 7C pseudogene	pseudo	10.9	6.79	17.11	16.09	11.45	16.93	15.94	21.22	17.31	13.05	25.63	12.22
Merged-chr5-125137242-3	chr5	125137164	125137364	+	922.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	41950.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	21.4	10.82	38.22	42.63	31.09	31.04	26.24	33.5	11.21	5.52	11.05	6.27
Merged-chr14-19976726-2	chr14	19976604	19976804	+	922.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	-11.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	13.73	24.4	11.98	8.85	24.55	18.81	10.63	10.54	15.74	19.58	14.57	15.66
Merged-chr1-94721223-3	chr1	94721131	94721331	+	922.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76211.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	19.79	17.1	25.67	17.29	15.14	15.05	8.3	18.84	20.65	12.55	19.6	6.89
Merged-chr18-34372945-3	chr18	34372848	34373048	+	922.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007874, intron 1 of 4)	CpG	467.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	18.17	17.1	11.41	12.07	27.0	14.42	9.3	21.36	14.75	10.54	10.05	11.59
Merged-chr15-64186040-3	chr15	64185963	64186163	+	922.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-125615.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	11.71	12.07	22.25	14.48	14.32	16.31	21.26	19.23	19.87	12.55	24.62	11.9
Merged-chr9-40325158-3	chr9	40325064	40325264	+	922.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3841.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	20.59	10.82	29.66	21.72	18.82	12.86	9.3	17.33	22.42	14.06	23.11	24.75
Merged-chr13-93773922-1	chr13	93773822	93774022	+	922.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	2243.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	6.86	2.52	4.56	6.44	12.27	19.44	9.3	12.53	1.38	4.52	1.51	1.57
Merged-chr10-7207553-2	chr10	7207457	7207657	+	922.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	4680.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	7.67	4.02	19.97	8.45	7.77	8.78	5.98	16.65	28.32	22.59	37.18	21.3
Merged-chr5-147564361-3	chr5	147564264	147564464	+	922.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	134208.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	10.9	25.91	26.81	19.31	13.09	24.15	8.64	12.39	31.47	15.57	44.22	23.49
Merged-chr8-114133583-2	chr8	114133487	114133687	+	922.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290182)	promoter-TSS (NM_001290182)	13.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	6.06	3.27	0.0	3.22	12.68	15.68	4.32	16.26	21.24	19.08	16.08	12.22
Merged-chr4-142098507-3	chr4	142098410	142098610	+	922.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14206.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	13.33	16.1	12.55	15.28	18.41	18.81	8.64	18.39	27.34	24.1	20.6	13.16
Merged-chr11-69395584-5	chr11	69395516	69395716	+	922.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-175.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	12.92	18.86	6.28	14.48	11.86	21.01	14.62	5.8	19.87	21.09	14.07	17.23
Merged-chr7-5125400-4	chr7	5125299	5125499	+	922.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009028, exon 1 of 1)	exon (NM_009028, exon 1 of 1)	551.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	6.06	15.34	14.83	12.87	11.45	5.02	7.64	2.19	11.01	7.03	10.55	7.83
Merged-chr14-58284648-2	chr14	58284542	58284742	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211956.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	8.08	5.28	4.56	5.63	10.64	10.66	10.3	12.25	18.88	14.56	37.69	13.16
Merged-chr12-105795122-1	chr12	105795022	105795222	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	10425.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.23	5.28	8.56	7.24	9.0	7.53	4.98	9.81	14.75	6.53	5.02	5.64
Merged-chr7-45741481-2	chr7	45741399	45741599	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	979.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	2.42	8.55	5.13	3.62	3.68	8.78	7.97	6.81	29.9	33.64	33.67	29.76
Merged-chr4-99152356-3	chr4	99152264	99152464	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31449.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	10.9	8.55	15.4	19.31	10.64	13.17	15.28	27.62	20.65	13.05	33.67	13.78
Merged-chr1-149827193-2	chr1	149827097	149827297	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95242.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.81	4.02	14.83	6.84	10.64	13.48	7.31	9.08	49.37	21.09	30.15	24.75
Merged-chr18-80555975-3	chr18	80555870	80556070	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11424.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	14.13	12.32	13.69	12.87	20.05	16.62	10.3	16.23	15.34	11.55	17.59	10.02
Merged-chr4-124657509-3	chr4	124657389	124657589	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-157.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	12.11	13.83	10.27	11.66	10.64	19.13	15.28	15.64	30.29	20.08	31.15	10.34
Merged-chr11-3175993-2	chr11	3175910	3176110	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	RLTR16B_MM|LTR|ERVK	17453.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	10.09	12.32	3.42	16.49	9.82	11.29	11.63	5.64	0.0	0.0	0.0	2.51
Merged-chr4-135272066-4	chr4	135271972	135272172	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	ID_B1|SINE|B4	688.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	45.23	61.12	23.39	10.46	12.27	26.97	15.94	8.8	13.96	13.05	16.58	17.23
Merged-chr6-128992947-2	chr6	128992845	128993045	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015455)	promoter-TSS (NR_015455)	-16.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	12.11	13.33	23.96	27.75	11.86	7.53	17.61	18.5	6.69	5.52	7.03	0.94
Merged-chr2-84617969-3	chr2	84617884	84618084	+	922.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	31496.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	12.92	17.36	17.11	8.85	17.59	16.93	7.97	15.28	16.52	23.6	18.09	14.72
Merged-chr7-25298197-3	chr7	25298056	25298256	+	922.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008776)	promoter-TSS (NM_008776)	-170.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	11.71	18.86	13.12	18.9	9.82	13.48	8.97	7.35	12.59	9.54	8.04	6.89
Merged-chr19-6418290-3	chr19	6418203	6418403	+	922.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-435.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	20.19	10.82	14.83	8.85	8.18	18.5	13.29	11.13	27.93	14.06	23.62	18.17
Merged-chr8-34155088-3	chr8	34154972	34155172	+	922.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	509.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	16.15	20.37	7.99	13.27	11.45	21.01	14.28	17.5	36.39	35.65	47.23	26.94
Merged-chr13-101742855-3	chr13	101742769	101742969	+	922.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	25348.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	18.98	13.33	25.1	28.15	8.18	15.99	11.63	16.23	14.16	22.59	18.59	10.02
Merged-chr14-103898794-3	chr14	103898677	103898877	+	922.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54301.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	11.71	9.06	8.56	17.29	20.05	17.56	17.27	43.43	19.87	21.09	28.14	13.16
Merged-chr6-128107966-3	chr6	128107881	128108081	+	922.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	35597.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	20.19	8.05	25.67	8.04	11.05	19.76	14.95	17.8	23.6	21.09	31.66	19.42
Merged-chr18-39140742-3	chr18	39140642	39140842	+	922.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	147597.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	7.27	12.07	14.26	18.5	19.64	14.42	11.96	27.48	14.75	22.09	23.62	13.16
Merged-chr12-73693575-3	chr12	73693472	73693672	+	922.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 4 of 13)	B3|SINE|B2	108776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	25.84	14.09	10.84	15.28	21.68	30.42	7.31	16.57	19.67	31.13	35.17	18.48
Merged-chr5-72723605-3	chr5	72723478	72723678	+	922.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289494, intron 5 of 13)	intron (NM_001289494, intron 5 of 13)	13024.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	9.69	10.82	14.83	19.31	9.0	18.19	16.94	16.21	13.57	13.05	25.12	12.84
Merged-chr13-17028789-2	chr13	17028696	17028896	+	922.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138654, intron 12 of 13)	ORR1F|LTR|ERVL-MaLR	665969.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	4.04	10.82	6.85	16.49	15.55	6.9	8.64	15.76	2.56	1.51	3.52	0.94
Merged-chr16-50431701-4	chr16	50431576	50431776	+	922.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 1 of 16)	CpG	713.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	11.31	21.13	10.84	24.53	21.27	10.66	18.27	23.47	17.9	15.06	23.11	20.68
Merged-chr19-10266640-2	chr19	10266528	10266728	+	922.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 5 of 19)	intron (NM_198114, intron 5 of 19)	-25880.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	6.06	8.55	8.56	7.64	16.36	11.92	4.98	16.71	16.92	11.55	20.1	10.02
Merged-chr13-23573562-2	chr13	23573493	23573693	+	922.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	597.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	4.85	8.55	5.13	12.87	13.91	16.93	9.3	11.52	10.23	9.54	24.12	14.1
Merged-chr13-24519172-2	chr13	24519063	24519263	+	922.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63026.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	10.9	10.06	6.85	4.83	6.55	13.8	8.97	15.11	11.8	5.02	7.03	4.7
Merged-chr10-60245218-3	chr10	60245128	60245328	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25968.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	29.07	26.66	14.83	12.87	20.05	18.19	6.98	16.74	38.35	33.64	16.08	18.48
Merged-chr12-102387432-3	chr12	102387334	102387534	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	52379.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	11.71	8.05	2.85	8.45	15.14	14.42	6.64	13.54	23.21	32.13	28.64	11.28
Merged-chr17-10344771-3	chr17	10344655	10344855	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	20153.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	14.13	9.31	1.71	10.46	15.96	20.7	12.62	18.08	20.85	11.55	22.11	10.96
Merged-chr12-71006285-3	chr12	71006158	71006358	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	9565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	9.29	14.34	18.25	11.66	11.86	15.99	22.26	14.47	12.78	12.55	9.55	15.66
Merged-chr13-49178072-3	chr13	49177980	49178180	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9467.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	25.84	22.39	21.68	10.05	25.77	43.27	9.97	10.26	38.35	55.73	34.67	14.72
Merged-chr15-59530837-3	chr15	59530741	59530941	+	922.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117813.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	19.38	14.59	13.69	15.69	9.41	17.25	7.97	13.65	35.21	18.08	27.13	11.59
Merged-chr19-6399716-3	chr19	6399658	6399858	+	922.295227	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-825.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	13.33	6.29	7.42	4.02	10.23	8.78	7.64	5.5	10.23	16.57	9.55	6.58
Merged-chr6-116676670-3	chr6	116676601	116676801	+	922.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2865.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	37.96	26.16	10.27	6.84	33.14	32.61	14.28	10.07	57.83	52.72	32.66	13.78
Merged-chr11-86585751-3	chr11	86585653	86585853	+	922.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-1595.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	10.09	13.58	12.55	12.47	10.64	11.29	14.62	7.93	12.98	19.08	12.06	10.34
Merged-chr15-59457369-3	chr15	59457265	59457465	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	83167.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	15.34	15.09	15.4	14.48	18.0	31.36	17.94	24.5	30.68	24.6	25.12	7.21
Merged-chr2-83728564-3	chr2	83728477	83728677	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	4180.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	11.31	14.84	14.26	11.66	20.86	12.23	17.27	30.31	36.39	24.1	39.19	26.31
Merged-chr10-21961126-3	chr10	21961019	21961219	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-17553.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	22.21	31.69	35.94	32.58	53.18	45.78	33.22	38.27	22.03	13.56	21.61	8.46
Merged-chr9-123953781-3	chr9	123953699	123953899	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	14893.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	24.63	11.07	20.54	33.38	19.64	19.76	25.24	29.05	13.18	13.56	12.56	14.41
Merged-chr1-184622699-3	chr1	184622577	184622777	+	922.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64986.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	10.9	8.3	35.37	24.53	37.64	39.2	23.92	46.09	39.93	43.68	44.22	28.82
Merged-chr19-38010591-2	chr19	38010475	38010675	+	922.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	33002.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	10.09	16.85	27.38	20.91	25.77	19.13	32.22	53.41	4.52	2.51	7.54	9.08
Merged-chr5-120528474-3	chr5	120528360	120528560	+	922.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 12 of 13)	B3|SINE|B2	17268.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	8.48	8.8	18.83	14.48	14.32	13.17	15.28	30.17	18.69	8.54	21.61	17.86
Merged-chr2-153784199-3	chr2	153784099	153784299	+	922.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036629, intron 3 of 7)	MLT1E1A|LTR|ERVL-MaLR	3320.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	10.5	18.36	14.26	26.95	29.46	36.69	22.92	35.66	38.94	17.07	36.68	22.24
Merged-chr2-128704462-6	chr2	128704336	128704536	+	922.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	B2_Mm2|SINE|B2	5521.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	8.08	5.28	6.28	10.86	13.91	5.64	20.59	15.31	9.24	7.03	13.06	12.84
Merged-chr5-125384656-3	chr5	125384542	125384742	+	922.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5375.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	15.34	18.11	17.68	8.85	15.55	37.32	5.65	4.77	19.87	32.13	9.55	9.4
Merged-chr13-111488857-3	chr13	111488781	111488981	+	922.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028487, intron 1 of 12)	CpG	1246.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	6.86	21.88	11.41	10.86	15.55	19.44	16.94	16.18	10.82	22.09	24.12	14.1
Merged-chr12-35573992-3	chr12	35573915	35574115	+	922.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39026.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	15.75	9.56	17.11	26.55	27.41	13.17	31.56	47.75	19.28	12.55	9.04	7.83
Merged-chr10-82901600-2	chr10	82901482	82901682	+	922.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34956.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	8.08	4.78	12.55	4.42	12.27	9.09	9.97	9.03	17.11	26.61	27.64	10.96
Merged-chr10-91139685-3	chr10	91139583	91139783	+	922.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15720.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	10.09	11.82	22.25	13.67	18.0	30.42	18.27	19.51	20.06	18.08	16.58	5.33
Merged-chr17-47505038-3	chr17	47504884	47505084	+	922.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081636)	promoter-TSS (NM_001081636)	-67.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	21.4	12.32	5.13	8.85	22.91	27.91	18.27	28.43	18.29	22.59	19.09	15.98
Merged-chr7-145308425-3	chr7	145308314	145308514	+	922.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145379, exon 3 of 3)	exon (NM_145379, exon 3 of 3)	-6421.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	8.08	11.57	11.98	14.88	31.5	27.28	23.25	34.88	45.83	32.13	51.76	21.93
Merged-chr9-22164968-3	chr9	22164878	22165078	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8132.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	12.52	15.59	5.7	19.31	8.59	19.76	18.93	20.64	14.16	10.04	14.57	14.72
Merged-chr11-43715505-3	chr11	43715419	43715619	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164231, intron 2 of 3)	intron (NM_001164231, intron 2 of 3)	32454.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	15.34	25.15	19.4	16.09	12.27	14.42	16.61	8.61	13.18	10.04	19.09	10.65
Merged-chr7-141456937-3	chr7	141456845	141457045	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028142, intron 2 of 9)	intron (NR_028142, intron 2 of 9)	1757.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	14.13	12.32	5.7	8.04	38.86	23.52	14.62	24.98	30.29	31.63	22.61	14.41
Merged-chr13-56631535-3	chr13	56631441	56631641	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 10 of 16)	intron (NR_155548, intron 10 of 16)	21955.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	11.31	16.35	21.68	10.46	13.91	18.81	6.31	16.82	39.34	19.58	27.64	18.48
Merged-chr2-4460314-3	chr2	4460228	4460428	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	59352.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	9.69	23.9	27.95	19.71	10.23	15.99	17.27	18.28	58.81	24.6	82.91	49.5
Merged-chr9-55272190-2	chr9	55272093	55272293	+	922.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	MTD|LTR|ERVL-MaLR	11432.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	11.71	6.54	5.7	7.24	17.18	16.62	17.94	15.76	12.98	25.11	10.55	11.59
Merged-chr10-57712868-2	chr10	57712767	57712967	+	922.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	61886.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	2.83	7.8	4.56	4.83	13.5	9.72	10.63	11.66	17.31	7.53	15.58	5.64
Merged-chr1-30948568-3	chr1	30948484	30948684	+	922.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1126.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	17.77	13.08	11.98	16.49	9.41	15.99	8.64	10.09	20.26	11.55	13.57	10.34
Merged-chr11-106564441-3	chr11	106564336	106564536	+	922.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	48494.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	10.09	17.1	21.68	17.7	32.73	63.03	43.85	49.37	30.88	21.09	12.56	19.11
Merged-chrX-155338471-3	chrX	155338377	155338577	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313711)	promoter-TSS (NM_001313711)	-17.0	NM_001313711	53381.0	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	23.02	19.62	11.98	14.48	20.05	32.3	18.6	20.3	20.26	9.54	35.17	19.11
Merged-chr18-31761013-3	chr18	31760912	31761112	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001242430, exon 1 of 8)	5' UTR (NM_001242430, exon 1 of 8)	396.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	10.5	15.34	19.97	11.26	13.09	26.34	10.96	16.65	34.22	21.09	42.71	18.48
Merged-chr4-83526375-3	chr4	83526270	83526470	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355549, intron 1 of 24)	intron (NM_001355549, intron 1 of 24)	825.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	14.13	10.56	13.69	13.67	19.64	6.27	7.97	12.95	22.62	13.56	19.09	15.66
Merged-chr16-21286320-3	chr16	21286255	21286455	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	10517.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	12.92	7.55	23.39	10.86	11.45	13.8	14.95	10.57	8.06	9.04	7.03	8.14
Merged-chr17-26957184-3	chr17	26957052	26957252	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001281491, exon 8 of 19)	exon (NM_001281491, exon 8 of 19)	-9033.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	9.69	15.85	6.28	14.08	14.73	19.76	13.62	12.0	10.82	11.05	18.09	13.16
Merged-chr9-118506226-3	chr9	118506112	118506312	+	922.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018748)	promoter-TSS (NM_018748)	-106.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	31.5	13.33	17.68	8.85	17.59	23.83	10.96	20.19	31.86	15.06	28.64	22.24
Merged-chr11-78080343-3	chr11	78080241	78080441	+	922.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	42.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	11.31	10.82	7.42	10.46	23.32	17.56	7.31	14.72	13.96	24.6	14.07	14.1
Merged-chr11-5792662-3	chr11	5792546	5792746	+	922.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4163.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	27.46	10.56	15.97	11.26	14.73	16.62	19.93	21.45	14.36	13.05	19.6	13.16
Merged-chr14-118854555-3	chr14	118854456	118854656	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021386)	promoter-TSS (NM_021386)	-394.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	14.13	25.15	6.85	14.48	17.18	15.37	12.62	21.03	11.21	11.55	26.63	6.27
Merged-chrX-49280116-3	chrX	49280027	49280227	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	intron (NM_001271449, intron 2 of 15)	8115.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	9.69	7.29	13.69	20.11	20.86	24.77	24.91	26.1	19.08	20.59	16.58	15.98
Merged-chr2-164078193-1	chr2	164078093	164078293	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	4015.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	5.65	14.09	4.56	5.23	12.27	16.31	20.59	5.64	12.59	4.02	5.53	5.33
Merged-chr12-11337011-1	chr12	11336911	11337111	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	37124.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	5.65	6.54	2.28	4.83	4.09	8.15	7.31	15.62	2.16	2.01	6.03	1.57
Merged-chr10-78464442-1	chr10	78464342	78464542	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	506.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	3.23	9.31	17.11	6.84	13.91	8.47	2.66	10.91	11.41	7.53	16.58	18.48
Merged-chr13-111941378-1	chr13	111941278	111941478	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	73442.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.4	0.0	1.14	0.0	4.09	4.08	6.98	5.47	7.67	4.02	4.52	5.01
Merged-chr5-90892107-1	chr5	90892007	90892207	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	862.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	18.57	11.32	4.56	3.22	0.41	29.48	6.64	1.51	4.92	7.53	4.52	0.63
Merged-chr18-60624482-1	chr18	60624382	60624582	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177340)	promoter-TSS (NM_177340)	-177.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	3.63	8.8	3.99	5.63	4.09	3.76	6.31	5.38	5.51	2.01	2.01	4.39
Merged-chr9-118747972-2	chr9	118747877	118748077	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36285.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.48	11.32	19.97	16.89	20.86	16.93	14.62	31.85	0.79	3.01	5.53	9.71
Merged-chr12-84408241-3	chr12	84408164	84408364	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028377)	promoter-TSS (NM_028377)	765.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	10.09	10.06	13.69	14.88	27.82	20.7	8.64	23.92	17.7	21.09	24.62	13.16
Merged-chr9-99171371-2	chr9	99171272	99171472	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31161.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.25	5.28	5.13	8.04	11.45	11.6	9.3	14.24	18.49	7.53	22.61	14.72
Merged-chr1-149826352-2	chr1	149826262	149826462	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C1|LTR|ERVK	96077.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.81	0.5	0.0	1.21	4.09	4.39	8.97	10.4	25.77	31.13	33.16	27.57
Merged-chr4-135352714-3	chr4	135352578	135352778	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016799, intron 1 of 17)	CpG	536.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	7.67	10.31	2.85	3.22	9.41	12.86	10.96	6.67	9.05	9.04	14.07	12.53
Merged-chr19-33158423-1	chr19	33158323	33158523	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 4 of 4)	MIRb|SINE|MIR	1311.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	4.85	4.78	5.13	14.48	3.68	10.66	2.66	8.44	2.95	4.52	13.06	5.33
Merged-chr4-9621363-1	chr4	9621263	9621463	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133723, exon 5 of 5)	3' UTR (NM_133723, exon 5 of 5)	22354.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.25	2.01	3.99	1.61	16.77	5.02	6.64	18.22	2.75	1.0	2.51	1.88
Merged-chr19-11376630-1	chr19	11376530	11376730	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310331, intron 1 of 6)	intron (NM_001310331, intron 1 of 6)	1142.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	3.23	6.04	7.42	8.04	15.55	8.47	15.61	16.12	6.69	2.51	4.52	6.89
Merged-chr10-87857403-3	chr10	87857298	87857498	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-867.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	15.34	18.11	2.28	12.47	26.18	14.42	13.62	19.26	24.19	14.06	5.53	10.65
Merged-chr7-19302197-8	chr7	19302073	19302273	+	921.9910890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008036)	TTS (NM_008036)	7872.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	24.23	18.11	7.99	2.01	27.41	25.71	1.33	2.52	14.16	29.62	7.54	4.7
Merged-chr18-37877861-3	chr18	37877751	37877951	+	921.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-23191.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	6.46	14.84	22.25	7.24	15.14	16.62	8.3	12.59	13.37	12.05	25.63	7.21
Merged-chr19-29816339-3	chr19	29816221	29816421	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3347.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	18.57	8.3	23.96	12.87	20.86	15.37	9.3	21.87	14.36	14.56	18.59	12.22
Merged-chr15-51083824-3	chr15	51083731	51083931	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-193790.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	18.17	13.58	12.55	9.65	13.5	25.4	12.62	16.29	20.46	13.05	17.08	21.62
Merged-chr15-58758427-3	chr15	58758337	58758537	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64990.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	19.38	11.32	18.83	15.69	20.05	16.62	10.3	23.27	18.29	10.54	21.61	17.23
Merged-chr7-28675266-3	chr7	28675156	28675356	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17593.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	9.69	14.59	19.97	12.87	20.86	15.99	17.27	17.02	29.7	33.14	29.65	19.42
Merged-chr5-99237324-3	chr5	99237205	99237405	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	15622.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	10.09	10.06	13.12	6.84	13.09	28.54	8.3	12.84	18.49	18.58	18.59	14.41
Merged-chr17-17895595-3	chr17	17895503	17895703	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7779.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	31.09	15.34	19.4	13.67	17.18	15.37	10.3	17.69	24.0	14.56	17.08	8.77
Merged-chr10-96623578-5	chr10	96623589	96623789	+	921.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007569)	TTS (NM_007569)	6688.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	9.29	10.82	2.85	4.42	11.05	14.74	1.66	6.42	8.65	8.03	2.01	4.39
Merged-chr9-85325675-3	chr9	85325592	85325792	+	921.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160379, intron 2 of 2)	intron (NM_001160379, intron 2 of 2)	1432.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	11.71	13.33	9.13	9.25	20.86	15.37	12.95	21.2	21.44	35.65	35.17	26.0
Merged-chr1-58897730-2	chr1	58897632	58897832	+	921.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75750.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	25.04	21.88	26.81	24.53	0.41	5.64	0.66	1.51	22.03	9.04	20.1	9.4
Merged-chr5-138731063-3	chr5	138730924	138731124	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-24057.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	9.29	16.85	9.13	12.07	32.73	72.44	31.22	22.35	41.89	53.73	48.74	15.66
Merged-chr6-54780746-3	chr6	54780639	54780839	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36177.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	15.34	6.79	13.12	16.09	9.41	14.74	7.64	14.27	27.14	15.57	31.15	20.05
Merged-chr9-42897565-3	chr9	42897491	42897691	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	CpG	46780.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	11.71	12.32	18.83	9.25	18.82	11.29	15.94	17.1	12.19	8.54	12.56	15.35
Merged-chr3-148805911-3	chr3	148805804	148806004	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148731.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	12.92	14.84	13.69	7.24	19.64	21.32	19.93	17.3	28.72	19.08	23.62	12.53
Merged-chr18-74780114-3	chr18	74780016	74780216	+	921.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177470, intron 1 of 9)	intron (NM_177470, intron 1 of 9)	904.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	12.92	12.83	18.25	11.66	14.73	22.58	8.97	13.79	12.98	17.07	10.55	10.34
Merged-chr10-61267574-3	chr10	61267471	61267671	+	921.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 2 of 21)	intron (NM_001081127, intron 2 of 21)	5867.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	16.96	9.31	26.24	24.94	14.32	10.03	11.29	22.37	13.57	10.54	29.14	15.66
Merged-chr5-38082717-3	chr5	38082619	38082819	+	921.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	43489.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	9.29	17.61	19.97	16.09	10.23	11.29	10.63	12.95	21.83	14.56	23.11	10.34
Merged-chr18-38404456-3	chr18	38404359	38404559	+	921.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR48|LTR|ERV1	-14448.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	10.09	17.86	14.83	13.67	20.05	26.65	19.6	19.71	11.8	17.07	13.57	9.4
Merged-chr3-51719198-3	chr3	51719100	51719300	+	921.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58021.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	17.36	15.85	23.96	18.1	10.64	5.96	2.99	16.09	12.39	4.52	9.04	10.65
Merged-chr12-112560305-1	chr12	112560205	112560405	+	921.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-28479.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	19.79	15.09	13.12	24.53	0.82	3.14	0.66	0.79	4.33	1.51	4.52	4.07
Merged-chr1-192745649-3	chr1	192745553	192745753	+	921.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 3 of 11)	U5|snRNA|snRNA	25566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	16.96	26.91	34.8	30.97	9.0	8.47	12.95	10.12	22.62	26.61	43.72	6.58
Merged-chr9-60794406-1	chr9	60794306	60794506	+	921.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-36.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	7.27	6.79	2.28	3.62	14.32	13.8	7.64	15.06	9.44	13.05	8.54	5.33
Merged-chrX-19172024-3	chrX	19171924	19172124	+	921.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25053.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	12.92	16.6	13.69	7.24	19.23	12.23	13.95	23.19	28.13	18.58	30.65	13.16
Merged-chr10-8834050-3	chr10	8833972	8834172	+	921.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	51998.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	17.36	17.86	13.69	8.04	21.68	18.5	15.61	23.44	19.28	23.6	17.08	14.72
Merged-chr1-91252213-3	chr1	91252098	91252298	+	921.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1632.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	10.9	11.82	10.84	10.46	4.09	16.62	11.63	3.64	13.57	23.1	19.09	10.65
Merged-chr14-13961739-4	chr14	13961646	13961846	+	921.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025435)	promoter-TSS (NM_025435)	106.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	10.5	6.04	3.42	8.45	6.14	8.78	4.98	6.48	13.96	13.05	6.53	7.83
Merged-chr14-65890854-2	chr14	65890753	65890953	+	921.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53551.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	13.33	9.56	21.68	5.23	8.59	7.53	5.65	4.01	27.93	30.13	35.17	10.34
Merged-chr11-4333222-2	chr11	4333120	4333320	+	921.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66424.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	18.98	18.11	10.84	14.48	22.91	26.34	28.23	26.47	7.47	15.57	9.55	5.33
Merged-chr6-34868498-3	chr6	34868400	34868600	+	921.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	5354.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	13.33	14.84	18.25	9.25	6.55	15.37	13.62	19.18	9.64	6.03	17.08	6.58
Merged-chr1-135734340-3	chr1	135734229	135734429	+	921.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	5162.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	18.17	10.06	23.96	9.25	7.36	11.6	8.97	18.28	17.31	10.54	22.11	10.96
Merged-chr2-31152323-3	chr2	31152228	31152428	+	921.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040334)	promoter-TSS (NR_040334)	12.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	9.29	4.53	8.56	6.84	13.09	12.86	5.98	12.62	16.92	17.07	17.08	16.29
Merged-chr18-21701985-1	chr18	21701885	21702085	+	921.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49617.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	2.42	4.53	12.55	7.64	15.96	15.99	7.97	12.14	0.79	1.0	0.5	0.63
Merged-chr4-59806308-1	chr4	59806208	59806408	+	921.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	CpG	658.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.04	5.79	6.85	4.42	13.09	9.09	8.64	11.33	6.88	13.05	6.53	10.96
Merged-chr11-118446046-3	chr11	118445914	118446114	+	921.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045902, intron 2 of 2)	intron (NR_045902, intron 2 of 2)	2480.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	14.54	4.78	6.85	4.42	9.0	11.6	3.99	10.37	13.96	13.05	11.05	10.02
Merged-chr6-34293055-3	chr6	34292970	34293170	+	921.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24373.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	18.98	11.07	14.26	6.44	17.59	13.8	12.62	17.69	22.03	19.08	25.12	13.47
Merged-chr12-85444866-3	chr12	85444750	85444950	+	921.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29040.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	18.57	10.31	17.68	18.5	10.64	14.11	11.29	14.89	23.6	23.1	12.56	9.71
Merged-chr2-165948250-3	chr2	165948167	165948367	+	921.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44370.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.63	5.79	15.4	10.05	13.09	14.42	10.63	19.85	10.62	7.03	15.58	20.36
Merged-chr14-71011154-2	chr14	71011057	71011257	+	921.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121050.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.25	1.01	4.56	12.07	20.05	14.74	9.63	15.25	12.19	13.56	21.1	3.45
Merged-chr10-82666644-3	chr10	82666549	82666749	+	921.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029102, intron 3 of 9)	L2c|LINE|L2	24001.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	9.29	5.53	13.69	9.25	13.5	20.07	2.99	12.22	15.54	23.1	23.11	14.72
Merged-chr14-7991596-4	chr14	7991488	7991688	+	921.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 1 of 7)	ID_B1|SINE|B4	2594.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	12.52	11.07	18.25	17.29	9.41	7.84	9.3	20.58	10.82	14.06	16.08	12.22
Merged-chr18-80322721-5	chr18	80322669	80322869	+	921.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001190373, exon 3 of 4)	exon (NM_001190373, exon 3 of 4)	41485.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	7.67	6.04	10.27	10.46	12.27	12.86	7.97	12.22	16.72	10.54	12.56	15.04
Merged-chr1-13978843-3	chr1	13978730	13978930	+	921.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191901.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	7.27	12.58	18.83	5.63	9.82	10.66	9.97	15.36	20.85	11.55	16.58	10.96
Merged-chr10-34195038-3	chr10	34194947	34195147	+	921.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12504.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	18.57	11.32	18.83	6.44	12.68	11.29	11.63	16.37	21.64	12.55	17.59	3.76
Merged-chr15-55318905-3	chr15	55318810	55319010	+	921.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	11160.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	8.48	13.83	17.11	14.08	20.05	29.79	7.31	16.09	23.01	20.59	29.14	5.64
Merged-chr3-79172572-2	chr3	79172479	79172679	+	921.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26704.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	10.09	5.28	6.28	1.21	10.64	15.99	16.28	11.1	15.14	13.56	9.55	7.52
Merged-chr13-15848210-3	chr13	15848098	15848298	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	40955.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	9.29	9.81	21.68	3.22	10.23	20.07	18.27	11.97	32.26	29.12	33.16	9.4
Merged-chr8-83698438-3	chr8	83698299	83698499	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	780.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	15.75	14.09	3.42	12.87	22.5	16.93	6.64	14.78	16.33	11.55	12.56	12.84
Merged-chr17-74447478-1	chr17	74447378	74447578	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033367, intron 3 of 8)	intron (NM_001033367, intron 3 of 8)	11630.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	24.63	12.32	34.8	13.67	0.0	0.31	0.0	1.12	1.38	0.0	0.0	0.63
Merged-chr11-79878860-2	chr11	79878758	79878958	+	921.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	83529.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.85	1.26	9.13	2.01	3.27	12.23	5.31	9.73	14.75	7.03	21.61	5.95
Merged-chr14-103815759-1	chr14	103815659	103815859	+	921.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	27942.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	8.88	2.26	5.7	10.05	9.41	16.93	15.94	19.07	6.1	6.53	15.58	7.21
Merged-chr15-59390399-3	chr15	59390311	59390511	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	16213.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	27.05	22.89	18.25	9.65	32.32	36.06	13.29	10.54	29.31	29.62	22.61	39.16
Merged-chr6-127147881-3	chr6	127147788	127147988	+	921.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-1501.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	14.13	16.35	11.41	10.86	13.91	16.62	11.29	8.41	17.7	20.59	22.11	9.08
Merged-chr3-133525612-5	chr3	133525511	133525711	+	921.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	B1_Mus1|SINE|Alu	18779.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.04	14.09	10.84	13.27	13.09	7.21	10.63	8.27	21.64	18.08	16.58	21.93
Merged-chr10-60369602-3	chr10	60369503	60369703	+	921.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	22752.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	11.31	11.32	24.53	8.85	21.27	16.93	11.63	25.46	19.08	24.6	30.15	16.6
Merged-chr3-152397097-3	chr3	152396996	152397196	+	921.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	412.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	14.94	10.31	17.68	12.47	22.5	19.76	21.26	27.62	14.95	11.55	43.21	19.74
Merged-chr2-163760746-2	chr2	163760648	163760848	+	921.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10509.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	10.9	14.09	15.97	19.31	18.0	9.72	13.62	24.11	12.59	4.02	6.53	5.33
Merged-chr12-72490219-2	chr12	72490115	72490315	+	921.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030070, intron 23 of 24)	RLTR19|LTR|ERVK	-46142.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	3.63	1.51	1.71	4.83	13.91	9.41	15.28	15.22	11.21	5.52	18.59	4.39
Merged-chr2-120099118-3	chr2	120099013	120099213	+	921.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	55462.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	11.71	9.56	15.97	16.89	16.77	18.81	18.6	40.74	28.72	22.59	16.58	20.68
Merged-chr4-15269006-3	chr4	15268824	15269024	+	921.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3104.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.04	6.29	4.56	8.04	7.36	3.45	3.99	8.92	8.26	11.05	12.06	7.83
Merged-chr14-74947862-3	chr14	74947744	74947944	+	921.3833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	33.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	18.57	19.37	14.26	13.27	11.86	15.37	5.31	11.83	13.57	10.54	20.1	8.46
Merged-chr6-124279653-2	chr6	124279582	124279782	+	921.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24969.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	7.27	3.52	19.97	13.67	11.45	7.21	14.95	24.62	4.33	2.51	13.06	2.19
Merged-chr2-157094166-2	chr2	157094067	157094267	+	921.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177439, intron 4 of 5)	L3|LINE|CR1	7112.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	1.62	9.81	21.68	1.61	13.5	13.8	13.62	11.07	5.51	7.03	5.53	12.53
Merged-chr19-17163675-3	chr19	17163598	17163798	+	921.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175807.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	12.11	10.82	14.26	17.7	18.0	15.05	16.28	15.39	8.85	15.06	26.63	12.53
Merged-chr10-122570828-3	chr10	122570728	122570928	+	921.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-937.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.86	11.32	15.4	17.7	18.82	15.99	19.93	32.27	27.34	27.62	29.65	21.93
Merged-chr17-73971528-3	chr17	73971445	73971645	+	921.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21349.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	12.11	6.79	19.4	15.28	9.82	25.4	22.26	40.54	31.86	45.69	34.17	36.34
Merged-chr18-15140494-2	chr18	15140405	15140605	+	921.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	10941.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	7.67	12.07	7.99	8.45	13.09	6.27	15.61	11.36	9.05	8.54	12.06	12.53
Merged-chrX-48341328-3	chrX	48341225	48341425	+	921.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178782)	promoter-TSS (NM_178782)	-33.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	20.59	11.32	10.84	19.31	17.59	7.53	12.95	14.92	18.88	15.57	28.14	15.98
Merged-chr7-19747494-3	chr7	19747381	19747581	+	921.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2092.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	22.21	17.61	16.54	12.07	22.91	42.02	12.29	9.11	44.45	31.63	23.11	12.22
Merged-chr5-99266505-3	chr5	99266399	99266599	+	921.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13572.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	12.11	15.09	18.83	15.69	16.36	10.35	6.64	8.94	44.45	19.58	19.09	11.28
Merged-chr10-24651311-3	chr10	24651178	24651378	+	921.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008813, exon 20 of 25)	exon (NM_008813, exon 20 of 25)	55836.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.44	21.88	17.68	14.48	9.82	10.66	25.91	16.93	17.31	9.54	28.64	13.78
Merged-chr3-88023015-3	chr3	88022942	88023142	+	921.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022031, intron 6 of 6)	CpG	4469.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	19.79	11.07	10.84	9.65	21.27	13.48	5.98	19.35	24.39	20.59	28.14	13.78
Merged-chr7-141219429-3	chr7	141219320	141219520	+	921.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025886)	TTS (NM_025886)	2073.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	14.94	7.8	19.4	12.47	12.27	15.68	16.61	22.21	14.95	11.55	28.14	20.68
Merged-chr2-168956048-1	chr2	168955948	168956148	+	921.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	-461.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	7.67	5.28	5.7	8.04	19.64	9.41	6.64	12.5	5.51	2.51	6.03	14.72
Merged-chr3-41375402-1	chr3	41375302	41375502	+	921.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	117797.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.25	2.01	5.13	9.25	12.27	8.15	18.93	19.82	5.51	7.53	9.04	2.19
Merged-chr4-151842271-3	chr4	151842165	151842365	+	921.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	MLT1E2|LTR|ERVL-MaLR	19503.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	19.38	9.06	14.26	24.53	16.36	13.8	14.95	18.28	13.77	18.58	26.63	14.41
Merged-chr1-131979845-3	chr1	131979753	131979953	+	921.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9244.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	17.77	7.04	13.69	8.04	21.27	15.05	11.63	25.04	19.28	5.02	17.59	12.22
Merged-chr18-25472589-3	chr18	25472483	25472683	+	921.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207165.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	11.71	11.32	12.55	4.02	22.09	24.46	17.94	24.84	44.25	19.58	40.2	13.78
Merged-chr7-128209889-3	chr7	128209774	128209974	+	921.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3508.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	16.96	22.13	18.25	4.02	25.77	34.81	10.3	6.56	27.93	27.11	18.59	15.04
Merged-chr13-51741018-3	chr13	51740919	51741119	+	921.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	52728.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	6.06	13.83	15.97	0.0	8.18	27.91	5.65	9.2	24.19	20.59	24.12	13.16
Merged-chr8-4193483-3	chr8	4193385	4193585	+	921.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346730, intron 10 of 19)	intron (NM_001346730, intron 10 of 19)	23827.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	16.15	11.07	3.99	20.91	7.36	9.72	12.95	14.83	19.87	20.59	35.68	7.52
Merged-chr1-105746699-3	chr1	105746587	105746787	+	921.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-34036.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	22.21	14.34	9.13	28.15	18.41	11.92	17.27	19.96	22.42	16.07	15.58	14.1
Merged-chr6-54729937-3	chr6	54729846	54730046	+	921.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48322.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	18.98	26.91	14.26	16.49	15.55	26.97	14.95	6.03	23.6	28.12	22.11	15.04
Merged-chr14-64792754-3	chr14	64792646	64792846	+	921.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 37 of 39)	MTC|LTR|ERVL-MaLR	140215.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	12.11	20.12	31.95	26.95	11.86	8.47	11.63	15.11	12.78	4.52	10.55	10.02
Merged-chr15-103502950-2	chr15	103502828	103503028	+	921.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008800)	promoter-TSS (NM_008800)	-106.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	8.88	9.81	5.13	4.42	6.95	4.39	7.97	5.64	4.33	4.02	5.53	6.58
Merged-chr7-142373872-2	chr7	142373771	142373971	+	921.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-125.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	16.96	19.12	17.11	20.51	7.77	0.63	5.98	3.39	20.46	18.08	19.09	7.52
Merged-chr7-38001684-2	chr7	38001583	38001783	+	921.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17869.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.65	4.28	16.54	22.93	12.68	11.29	11.96	15.95	2.36	3.51	1.51	1.57
Merged-chr19-36348269-3	chr19	36348148	36348348	+	921.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30819.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	10.09	12.32	14.26	12.07	13.09	19.13	17.27	17.58	15.74	12.05	17.59	7.21
Merged-chr2-166460080-3	chr2	166459960	166460160	+	921.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12609.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	12.11	11.82	9.7	7.64	18.0	13.48	11.29	15.5	13.96	20.08	14.57	13.47
Merged-chr9-64173516-3	chr9	64173396	64173596	+	921.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	109.0	NM_024212	67891.0	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	17.77	17.1	10.27	13.67	7.77	28.85	13.29	15.08	21.44	21.09	18.09	24.12
Merged-chr1-92217419-3	chr1	92217321	92217521	+	921.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37080.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	15.75	16.85	23.39	7.24	13.91	22.26	20.59	16.23	37.57	22.59	27.13	14.72
Merged-chr3-27600847-3	chr3	27600754	27600954	+	921.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-15859.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	21.0	11.32	6.28	8.85	21.68	13.17	16.94	23.44	23.6	11.55	25.63	18.8
Merged-chr2-25621400-3	chr2	25621272	25621472	+	921.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040130, intron 3 of 4)	intron (NM_001040130, intron 3 of 4)	630.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	8.48	10.82	9.7	16.89	11.45	11.92	15.28	20.27	12.98	16.57	15.58	10.34
Merged-chr7-35269836-2	chr7	35269719	35269919	+	921.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	48621.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	4.04	3.02	6.28	6.84	9.41	10.66	7.64	10.77	10.42	24.6	28.14	15.98
Merged-chr4-106328901-3	chr4	106328810	106329010	+	921.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183225, intron 1 of 67)	MTEb|LTR|ERVL-MaLR	12697.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	12.52	18.36	6.28	30.97	19.23	9.09	8.97	26.97	16.13	18.58	14.57	20.05
Merged-chr1-135427602-3	chr1	135427490	135427690	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357578, intron 1 of 24)	intron (NM_001357578, intron 1 of 24)	2901.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	33.92	26.16	21.68	41.02	13.91	10.35	17.27	12.39	12.78	10.54	18.59	12.53
Merged-chr12-25316184-2	chr12	25316091	25316291	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	187017.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.23	6.04	3.42	8.45	2.05	4.08	9.63	8.36	16.72	4.52	21.1	8.14
Merged-chr7-42490579-1	chr7	42490479	42490679	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001309388, intron 2 of 6)	intron (NM_001309388, intron 2 of 6)	15174.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	3.23	4.78	14.26	14.08	5.73	5.33	6.64	17.47	4.92	0.0	13.06	11.9
Merged-chr6-48968113-1	chr6	48968013	48968213	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-7030.0	NM_001029987	243376.0	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.0	0.5	3.42	0.8	3.27	10.35	1.66	9.84	7.28	7.53	11.56	6.89
Merged-chr2-32547831-1	chr2	32547731	32547931	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12472.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	14.13	6.79	9.7	7.24	10.64	22.89	6.98	7.71	16.72	14.56	9.55	11.59
Merged-chr18-17748783-1	chr18	17748683	17748883	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-167793.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	1.21	2.52	1.14	6.03	17.59	9.09	14.62	33.67	5.31	4.52	5.02	4.07
Merged-chr12-16634218-2	chr12	16634116	16634316	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19254.0	NM_001361702	18217.0	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT-R-2|NT2R|NTR2|NTRL	neurotensin receptor 2	protein-coding	11.71	7.8	5.7	2.01	19.64	18.5	15.61	17.16	0.98	0.0	1.51	0.31
Merged-chr4-89353355-1	chr4	89353255	89353455	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42323.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.21	3.27	1.14	0.4	6.14	7.84	12.29	10.57	5.31	5.52	7.03	0.63
Merged-chr11-88067969-3	chr11	88067849	88068049	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016686)	promoter-TSS (NM_016686)	-330.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	30.69	17.1	11.98	7.24	24.55	14.74	9.3	8.19	13.18	17.57	19.6	10.96
Merged-chr10-7062765-1	chr10	7062665	7062865	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39580.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	7.27	5.53	9.13	10.86	11.86	2.51	4.98	5.44	4.52	4.52	7.54	6.58
Merged-chr17-64752334-1	chr17	64752234	64752434	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 21 of 21)	intron (NM_008549, intron 21 of 21)	-14777.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	2.42	3.27	0.57	4.02	2.86	3.45	7.31	7.74	1.77	2.01	3.52	2.51
Merged-chr19-5787246-3	chr19	5787178	5787378	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	8703.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	14.54	10.06	9.13	7.64	19.64	18.19	3.65	12.56	17.7	25.61	25.63	13.78
Merged-chr2-131239734-3	chr2	131239597	131239797	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206382, intron 3 of 7)	PB1D10|SINE|Alu	5634.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	9.69	3.02	11.41	8.45	11.86	8.47	7.64	6.73	15.34	8.03	8.54	9.71
Merged-chr1-180268806-3	chr1	180268686	180268886	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12486.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	11.71	7.8	11.41	17.29	13.5	25.4	9.97	15.0	23.01	18.58	31.15	13.47
Merged-chr11-9379352-1	chr11	9379252	9379452	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	187410.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	1.62	0.5	2.28	2.41	2.45	4.08	5.98	10.35	0.59	1.0	13.06	2.82
Merged-chr2-73462482-1	chr2	73462382	73462582	+	921.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-8593.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	2.42	2.26	5.7	8.04	5.73	2.82	4.65	9.0	11.01	10.04	15.07	7.52
Merged-chr17-84878052-3	chr17	84877963	84878163	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78678.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	6.86	13.33	8.56	10.86	15.96	17.87	9.3	12.2	33.83	37.16	26.13	14.1
Merged-chr12-84217648-3	chr12	84217555	84217755	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1226.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	11.31	8.05	10.27	16.49	19.64	24.46	12.95	24.31	23.41	14.56	27.64	11.9
Merged-chr13-67331302-3	chr13	67331201	67331401	+	920.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177622, intron 1 of 4)	ID_B1|SINE|B4	1259.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	9.29	18.36	17.11	16.89	24.55	22.89	7.97	12.08	28.32	33.14	27.64	11.28
Merged-chr12-32773971-3	chr12	32773868	32774068	+	920.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46367.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	12.92	11.07	23.96	8.85	16.36	16.93	18.27	14.78	26.36	14.06	21.61	18.48
Merged-chr4-63410209-3	chr4	63410094	63410294	+	920.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6749.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	25.04	15.85	10.27	6.84	14.32	38.88	12.29	9.22	13.57	22.59	24.12	11.59
Merged-chr1-24700615-2	chr1	24700518	24700718	+	920.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	21700.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	7.67	4.78	8.56	10.46	20.86	12.54	6.31	20.97	16.13	14.06	23.11	11.9
Merged-chr17-34077766-3	chr17	34077663	34077863	+	920.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14616.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	18.17	16.35	15.97	16.09	16.77	12.23	1.33	11.64	21.83	15.06	14.57	11.9
Merged-chr7-109959194-3	chr7	109959085	109959285	+	920.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1237.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	21.8	11.82	10.84	12.87	11.05	17.56	7.97	7.54	13.18	12.55	15.58	2.19
Merged-chr12-36214560-2	chr12	36214448	36214648	+	920.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	3670.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	9.29	4.78	18.25	20.51	9.0	12.23	9.63	14.86	5.31	1.0	5.53	1.88
Merged-chr6-146125032-2	chr6	146124955	146125155	+	920.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	190933.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	12.92	1.76	4.56	2.01	14.73	34.81	31.56	33.48	38.16	21.09	17.08	5.95
Merged-chr4-118107419-2	chr4	118107315	118107515	+	920.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	27531.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	14.13	15.85	11.41	14.88	20.86	24.46	16.61	27.59	3.93	8.03	3.01	1.25
Merged-chr14-63411164-3	chr14	63411063	63411263	+	920.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6024.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	24.63	9.81	30.23	19.71	25.36	14.42	34.88	60.65	11.41	17.07	11.05	10.02
Merged-chr19-32387956-3	chr19	32387813	32388013	+	920.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001362423, exon 1 of 10)	5' UTR (NM_001362423, exon 1 of 10)	136.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	17.36	8.8	10.84	4.02	16.77	9.41	13.95	11.86	12.78	15.57	10.55	4.39
Merged-chr17-24171326-3	chr17	24171212	24171412	+	920.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1634.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	4.85	10.56	9.7	3.62	10.23	8.78	7.31	7.99	22.82	13.56	16.58	9.71
Merged-chr7-98360232-3	chr7	98360152	98360352	+	920.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	1036.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	14.13	20.37	10.27	8.85	27.82	19.13	19.6	12.5	22.82	18.58	15.58	14.1
Merged-chr2-124613685-3	chr2	124613607	124613807	+	920.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	3411.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	14.13	6.79	27.38	28.96	20.05	22.89	41.52	38.07	27.14	18.58	32.66	13.78
Merged-chr11-70447594-3	chr11	70447509	70447709	+	920.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4322.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	17.77	13.83	15.4	11.66	23.32	21.64	11.29	16.35	23.8	23.6	24.62	7.83
Merged-chr7-78865066-3	chr7	78864980	78865180	+	920.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17869.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	15.34	5.53	17.11	12.47	10.23	7.21	15.28	18.81	14.95	5.02	21.61	14.72
Merged-chr9-58249749-3	chr9	58249620	58249820	+	920.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311088)	promoter-TSS (NM_001311088)	66.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	12.92	7.8	14.83	10.86	11.05	21.32	7.64	13.32	11.41	16.57	18.09	9.08
Merged-chr10-118768020-2	chr10	118767922	118768122	+	920.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100881.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.23	5.03	3.42	1.61	11.45	11.6	15.61	12.81	15.74	13.05	18.59	11.59
Merged-chr10-19002253-2	chr10	19002226	19002426	+	920.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	9637.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	11.31	15.34	4.56	0.8	9.0	14.74	3.32	1.29	5.9	10.54	3.52	4.07
Merged-chr7-4410086-2	chr7	4409986	4410186	+	920.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12342.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	8.08	16.1	12.55	4.02	12.68	10.66	7.64	11.1	17.31	8.54	15.07	6.27
Merged-chr1-97714899-3	chr1	97714804	97715004	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	-52886.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	10.5	15.59	15.97	16.89	16.36	15.37	11.96	25.49	33.83	20.59	31.66	8.14
Merged-chr1-132317573-3	chr1	132317476	132317676	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	1451.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	30.28	9.81	22.82	6.84	10.64	15.05	8.97	12.45	17.11	11.05	14.57	11.9
Merged-chr9-57421415-3	chr9	57421310	57421510	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	18326.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	12.11	17.36	10.84	17.7	27.41	24.77	10.96	16.88	18.88	27.62	21.1	13.16
Merged-chr1-179073156-3	chr1	179073063	179073263	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 8 of 11)	L3b|LINE|CR1	444878.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	14.13	14.84	42.78	29.76	10.23	11.92	10.3	12.53	12.78	4.02	30.15	8.46
Merged-chr7-4078490-3	chr7	4078402	4078602	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-15298.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	14.13	8.55	18.25	9.65	11.86	22.89	3.99	5.38	16.92	13.56	6.53	4.07
Merged-chr2-14242539-3	chr2	14242449	14242649	+	920.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	13135.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	17.36	11.07	18.25	17.29	16.36	11.29	22.92	20.38	10.82	19.58	25.12	12.53
Merged-chr4-3812670-3	chr4	3812578	3812778	+	920.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	22977.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	27.86	25.4	26.81	12.07	27.0	30.73	7.31	6.79	21.83	40.67	35.68	20.68
Merged-chrX-102090787-3	chrX	102090708	102090908	+	920.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163610, exon 8 of 8)	3' UTR (NM_001163610, exon 8 of 8)	-19501.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	16.56	11.82	15.4	17.7	21.68	15.99	8.3	28.46	27.93	13.56	32.66	15.66
Merged-chr12-26356387-3	chr12	26356293	26356493	+	920.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130981, intron 2 of 4)	intron (NR_130981, intron 2 of 4)	9683.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	16.15	9.81	12.55	9.65	21.27	49.86	27.24	16.43	20.06	32.13	23.11	2.82
Merged-chr1-86529101-3	chr1	86529019	86529219	+	920.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	intron (NM_008972, intron 1 of 4)	2562.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	20.19	5.53	6.28	19.31	16.36	10.35	7.64	10.54	15.54	11.05	14.07	10.96
Merged-chr10-7037420-1	chr10	7037320	7037520	+	920.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302795, exon 6 of 6)	3' UTR (NM_001302795, exon 6 of 6)	-14235.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.65	4.53	7.42	6.03	17.59	6.27	11.96	15.73	8.06	3.01	11.05	8.77
Merged-chr17-23719682-2	chr17	23719573	23719773	+	920.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6663.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	15.34	7.04	10.27	17.29	20.46	12.86	8.64	15.28	4.92	6.03	13.06	4.39
Merged-chr8-70816873-3	chr8	70816762	70816962	+	920.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008353, intron 11 of 15)	CpG	8413.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	14.94	13.08	8.56	8.45	50.73	59.89	28.57	45.14	27.73	22.09	11.05	11.59
Merged-chr5-136429830-3	chr5	136429738	136429938	+	920.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-54035.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	18.57	14.84	19.97	25.34	9.0	10.35	16.94	22.12	12.78	13.56	20.6	17.86
Merged-chrX-61722642-3	chrX	61722526	61722726	+	920.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13010.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	10.09	9.56	9.7	14.48	39.27	26.97	38.53	38.86	22.23	30.13	31.66	25.37
Merged-chr18-50065152-1	chr18	50065052	50065252	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-11490.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	5.25	9.06	7.99	7.24	13.09	7.53	2.99	9.39	6.1	2.01	6.03	4.7
Merged-chr18-47318944-1	chr18	47318844	47319044	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	49924.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	4.44	4.78	15.4	2.41	12.27	5.02	10.3	12.73	1.97	1.0	1.51	1.57
Merged-chr14-70889976-3	chr14	70889865	70890065	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-142.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	21.4	22.13	21.11	16.49	19.23	15.68	13.29	15.39	12.0	8.03	18.59	9.08
Merged-chr11-89098284-3	chr11	89098192	89098392	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	24451.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	23.02	26.41	48.49	23.33	2.86	9.41	5.65	5.75	37.57	38.66	37.18	24.43
Merged-chr8-71702711-1	chr8	71702611	71702811	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-911.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	2.42	2.01	1.14	2.41	11.45	4.39	10.63	13.74	2.95	2.51	3.01	0.63
Merged-chr6-8770652-1	chr6	8770552	8770752	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	7832.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	1.62	0.5	1.14	4.42	12.68	11.6	18.27	15.93	5.9	4.52	16.58	5.33
Merged-chr13-52189731-3	chr13	52189620	52189820	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	92979.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	13.33	8.3	7.99	8.45	18.82	15.68	13.62	18.59	15.93	12.05	28.64	19.11
Merged-chr10-40094966-3	chr10	40094853	40095053	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	B3A|SINE|B2	47301.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	10.9	12.32	22.82	13.67	29.05	35.43	38.53	35.02	33.24	32.64	19.09	13.78
Merged-chr5-62760394-3	chr5	62760309	62760509	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	5768.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.46	10.82	9.13	13.27	13.91	10.66	5.65	15.45	18.29	9.54	12.06	10.96
Merged-chr18-6107970-2	chr18	6107859	6108059	+	920.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	28139.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.85	5.53	14.26	8.04	18.82	9.72	25.58	23.97	13.18	15.06	26.13	11.28
Merged-chr14-59556296-3	chr14	59556115	59556315	+	920.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41744.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	4.44	10.82	11.98	3.62	6.14	5.96	6.31	14.05	12.0	13.05	14.07	17.23
Merged-chr1-64297013-3	chr1	64296926	64297126	+	920.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-175637.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	12.92	9.56	19.4	18.1	25.36	20.7	9.3	23.1	12.78	9.04	30.65	10.02
Merged-chr1-82291543-3	chr1	82291381	82291581	+	920.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010570)	promoter-TSS (NM_010570)	-42.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	14.54	13.33	17.11	6.03	10.23	7.84	6.98	11.21	11.6	10.04	15.07	15.66
Merged-chr1-91092628-3	chr1	91092507	91092707	+	920.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	39163.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	10.5	11.82	9.13	24.13	10.64	20.38	19.27	24.56	27.54	18.08	27.13	10.65
Merged-chr19-11818883-2	chr19	11818787	11818987	+	920.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153434, exon 1 of 12)	non-coding (NR_153434, exon 1 of 12)	516.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	10.9	20.88	10.27	8.85	13.5	21.95	9.97	7.54	11.8	7.03	15.07	7.52
Merged-chr17-17884996-3	chr17	17884906	17885106	+	920.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1067.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	17.36	8.55	12.55	10.46	22.91	42.33	12.29	11.1	40.91	59.75	37.69	11.59
Merged-chr4-117146376-3	chr4	117146280	117146480	+	920.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8194.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	16.96	17.61	12.55	9.25	11.45	21.01	9.3	13.46	26.55	28.12	23.11	12.22
Merged-chr19-46510997-3	chr19	46510909	46511109	+	920.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9361.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	22.61	12.07	17.68	10.86	12.68	23.2	9.97	15.39	33.63	30.13	22.11	16.29
Merged-chr19-56398509-3	chr19	56398418	56398618	+	920.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007611, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1389.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	22.61	21.63	15.97	16.09	13.09	19.76	11.29	15.59	19.28	14.56	13.06	9.71
Merged-chr1-89581237-4	chr1	89581076	89581276	+	920.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	CpG	102716.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	11.71	10.56	7.42	11.66	4.91	7.21	10.63	10.91	6.29	9.54	7.03	7.52
Merged-chr4-102792483-3	chr4	102792388	102792588	+	920.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32353.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	6.46	9.81	16.54	15.28	9.0	15.05	21.59	14.27	11.6	12.05	16.58	9.4
Merged-chr19-4112371-2	chr19	4112279	4112479	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_075078, exon 22 of 24)	non-coding (NR_075078, exon 22 of 24)	9196.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	5.25	6.79	2.28	3.62	5.73	18.5	8.3	6.53	14.55	15.06	11.56	4.39
Merged-chr6-137570873-2	chr6	137570776	137570976	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001271595, exon 1 of 21)	5' UTR (NM_001271595, exon 1 of 21)	133.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.81	0.0	0.0	1.61	24.14	29.79	21.26	33.08	11.41	6.53	20.6	8.77
Merged-chr15-58989635-1	chr15	58989535	58989735	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55825.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	7.27	8.55	3.42	8.45	20.46	19.13	6.98	6.76	11.6	8.54	5.53	4.39
Merged-chr2-30441239-3	chr2	30441138	30441338	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25188.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	17.77	13.58	8.56	3.62	11.86	14.74	11.29	13.99	11.01	6.03	16.58	10.96
Merged-chr15-78773530-3	chr15	78773432	78773632	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008595)	promoter-TSS (NM_008595)	-87.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	25.44	6.79	14.26	9.65	43.77	27.91	13.29	19.32	41.3	39.16	61.81	35.09
Merged-chr9-48410761-1	chr9	48410661	48410861	+	920.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43583.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.0	0.25	0.57	0.0	0.0	0.63	0.0	0.0	19.08	23.6	15.58	11.28
Merged-chr10-14017895-2	chr10	14017792	14017992	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	51513.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	10.5	2.01	6.85	4.02	9.41	21.32	20.59	9.22	22.62	19.58	3.52	3.76
Merged-chr16-91899726-2	chr16	91899640	91899840	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 33 of 38)	intron (NM_010587, intron 33 of 38)	31890.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.67	4.02	7.99	8.04	1.64	8.78	4.65	12.67	11.8	2.51	13.06	6.58
Merged-chr14-54383896-2	chr14	54383809	54384009	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23068.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	10.09	9.81	5.13	1.61	15.14	10.03	7.97	11.19	11.01	9.04	8.04	1.25
Merged-chr13-5804384-2	chr13	5804267	5804467	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53725.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	25.04	26.41	15.97	15.28	22.09	21.32	17.94	19.29	29.5	35.65	32.66	16.92
Merged-chr7-28430714-3	chr7	28430612	28430812	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	5479.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	13.33	10.31	13.12	17.29	15.14	11.92	14.28	16.07	18.69	26.11	18.59	16.29
Merged-chr12-76377951-3	chr12	76377856	76378056	+	920.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7690.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	11.71	13.83	21.68	19.31	17.59	13.17	12.95	13.18	21.05	11.55	17.59	28.51
Merged-chr9-62058263-3	chr9	62058187	62058387	+	920.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_033320, exon 3 of 3)	3' UTR (NM_033320, exon 3 of 3)	12319.0	NM_033320	93683.0	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding	18.98	19.37	24.53	9.65	9.41	9.09	7.64	16.43	13.57	6.53	9.55	9.08
Merged-chr5-106709758-3	chr5	106709652	106709852	+	920.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12922.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	13.73	8.05	5.13	9.65	17.59	15.99	15.94	21.31	22.82	27.11	25.12	15.35
Merged-chr6-129375282-3	chr6	129375193	129375393	+	920.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001204223)	TTS (NM_001204223)	10210.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	5.25	10.06	17.11	15.28	17.59	20.07	10.96	19.93	29.11	21.59	20.1	10.96
Merged-chr16-65582898-3	chr16	65582803	65583003	+	920.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-20206.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	10.5	9.31	17.11	27.75	19.23	12.86	15.28	25.99	28.32	25.11	57.28	27.88
Merged-chr8-77550366-3	chr8	77550257	77550457	+	920.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081240, intron 1 of 11)	MER20|DNA|hAT-Charlie	960.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	16.15	12.32	14.83	12.47	24.96	14.74	12.62	21.56	27.93	22.09	28.64	8.46
Merged-chr2-165819691-3	chr2	165819598	165819798	+	920.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38475.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	15.75	8.3	4.56	12.07	11.45	12.86	6.31	7.77	26.95	22.59	13.06	16.6
Merged-chr15-40953820-3	chr15	40953707	40953907	+	920.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-219894.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	16.56	11.32	7.42	16.09	31.5	21.95	14.28	39.53	40.91	43.18	41.71	14.41
Merged-chr3-95672660-3	chr3	95672561	95672761	+	920.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13940.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	16.15	17.86	23.96	8.45	18.41	16.93	12.29	19.82	17.11	12.05	13.06	13.78
Merged-chr4-12021417-1	chr4	12021317	12021517	+	920.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54843.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	8.88	6.29	6.28	16.09	11.05	5.33	8.64	14.89	11.8	7.03	8.54	4.7
Merged-chr8-117054320-3	chr8	117054226	117054426	+	920.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	28123.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	15.34	8.55	12.55	20.11	15.55	19.44	11.96	21.9	17.9	17.07	26.13	10.02
Merged-chr1-36130487-3	chr1	36130379	36130579	+	920.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13834.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	13.73	5.03	5.7	12.07	43.77	39.51	35.21	61.63	35.4	27.62	59.29	28.51
Merged-chr14-73120179-3	chr14	73120082	73120282	+	920.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22328.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	11.31	10.82	16.54	5.23	11.05	21.32	10.96	11.47	14.16	14.56	15.58	6.27
Merged-chr5-106681112-3	chr5	106681015	106681215	+	920.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	15715.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	27.05	8.05	18.25	26.55	24.14	10.98	11.96	18.25	21.24	19.08	38.19	13.47
Merged-chr15-55291986-3	chr15	55291898	55292098	+	920.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15752.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	18.98	13.33	13.69	14.88	13.09	16.31	7.31	14.52	13.57	20.59	19.6	11.28
Merged-chr17-85458244-1	chr17	85458144	85458344	+	920.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028576, exon 11 of 11)	3' UTR (NM_028576, exon 11 of 11)	160152.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	1.62	1.26	2.28	2.41	14.73	6.59	12.29	12.79	1.77	7.03	3.01	0.31
Merged-chr1-13328534-3	chr1	13328431	13328631	+	920.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	43898.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	6.46	16.1	18.25	16.09	9.0	13.17	9.63	16.93	17.31	13.05	9.55	10.02
Merged-chr6-98513475-3	chr6	98513377	98513577	+	920.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170723.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	16.56	26.41	18.25	10.46	27.41	31.36	10.3	19.18	14.95	20.59	19.6	9.08
Merged-chr15-89075385-3	chr15	89075273	89075473	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355617)	promoter-TSS (NM_001355617)	481.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	19.79	15.34	12.55	12.07	16.77	15.37	8.97	15.73	14.36	18.08	16.58	15.35
Merged-chr2-113391136-3	chr2	113391027	113391227	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-49937.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	17.77	6.79	14.83	11.26	11.86	12.23	6.31	12.95	24.0	25.11	21.1	13.16
Merged-chr1-171102377-3	chr1	171102257	171102457	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19304.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	22.21	13.33	17.11	7.64	12.27	22.89	8.64	9.95	10.82	18.58	14.07	9.08
Merged-chr3-121603012-3	chr3	121602918	121603118	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	40467.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	7.27	10.82	10.84	13.27	20.46	20.7	19.93	26.78	27.54	30.63	33.16	20.36
Merged-chr4-70420692-3	chr4	70420610	70420810	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10275.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	13.33	4.78	11.41	12.07	15.14	11.6	13.29	32.64	22.23	17.57	30.15	22.87
Merged-chr7-29767244-3	chr7	29767178	29767378	+	920.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1274.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	12.52	18.86	18.83	14.88	11.45	16.31	5.98	15.42	21.44	16.57	21.1	14.1
Merged-chr9-65745631-3	chr9	65745520	65745720	+	920.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	RSINE1|SINE|B4	69072.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	28.27	25.15	29.66	19.31	18.41	25.71	22.92	25.93	13.77	10.54	12.56	10.65
Merged-chr2-129604289-3	chr2	129604186	129604386	+	920.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8824.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	17.77	8.3	16.54	12.47	20.05	29.48	14.62	18.9	29.7	28.12	21.61	23.81
Merged-chr2-129175822-3	chr2	129175735	129175935	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4838.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	16.56	10.31	9.13	5.23	18.82	22.26	8.97	19.12	33.63	28.62	19.6	20.99
Merged-chr13-81233070-3	chr13	81232948	81233148	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	MIR|SINE|MIR	268974.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.52	11.07	13.12	16.09	14.73	10.35	20.59	43.79	16.33	20.08	14.07	17.23
Merged-chr9-106223224-3	chr9	106223134	106223334	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031178, intron 1 of 1)	intron (NM_031178, intron 1 of 1)	636.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	13.73	15.34	11.98	16.09	15.96	15.37	12.29	14.36	32.26	12.55	25.63	14.1
Merged-chr8-92846798-3	chr8	92846678	92846878	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-8555.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	12.92	5.79	5.7	16.89	11.45	11.29	12.95	18.31	18.1	21.59	19.09	10.65
Merged-chrX-12886627-6	chrX	12886532	12886732	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-50241.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	0.81	3.02	5.7	7.24	7.36	12.86	13.29	11.19	5.11	5.52	6.03	9.71
Merged-chr17-87602347-3	chr17	87602249	87602449	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33630.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	15.75	19.37	19.97	12.87	22.5	18.19	11.63	16.29	32.06	13.05	34.17	20.05
Merged-chr16-76192062-3	chr16	76191973	76192173	+	920.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER92-int|LTR|ERV1	69460.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	10.9	5.79	19.4	14.88	11.86	13.17	8.97	23.24	18.1	16.07	21.1	13.47
Merged-chr1-165718502-3	chr1	165718392	165718592	+	920.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10398.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	11.71	7.8	7.99	16.89	11.05	12.54	15.61	14.58	14.95	12.05	18.09	7.83
Merged-chr1-135544979-3	chr1	135544877	135545077	+	920.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	40378.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	17.36	10.31	18.83	12.47	14.73	13.17	11.63	17.13	15.74	15.57	15.07	6.58
Merged-chr8-70600901-3	chr8	70600819	70601019	+	920.1277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 4 of 16)	intron (NM_133772, intron 4 of 16)	6438.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	11.31	9.56	7.42	12.47	13.09	8.78	9.63	11.44	10.03	13.56	17.08	5.64
Merged-chr2-173062196-2	chr2	173062119	173062319	+	920.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40317.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	5.65	5.03	4.56	7.24	11.86	29.16	28.23	18.28	20.26	9.54	18.59	12.22
Merged-chr5-118633310-3	chr5	118633298	118633498	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72679.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	12.92	9.31	12.55	11.26	11.86	5.02	9.97	7.04	5.51	6.03	7.54	8.77
Merged-chr7-127118036-3	chr7	127117931	127118131	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	3998.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	19.79	23.39	7.99	6.44	13.5	22.58	12.29	18.48	30.88	40.17	33.67	25.06
Merged-chr8-106394594-3	chr8	106394490	106394690	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20749.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	20.59	16.1	30.8	25.74	8.18	7.21	21.59	23.83	14.55	8.03	19.6	16.6
Merged-chr17-70985691-3	chr17	70985592	70985792	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	4824.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	8.48	15.59	25.1	9.25	20.05	20.07	16.94	19.99	27.14	23.1	37.69	18.8
Merged-chr1-144240118-2	chr1	144239974	144240174	+	920.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	9030.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	21.8	17.61	1.14	0.4	25.77	12.23	0.33	4.57	6.1	15.06	1.0	5.64
Merged-chr9-114743648-2	chr9	114743549	114743749	+	920.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12446.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	14.13	13.58	18.25	10.46	24.96	19.44	20.26	27.14	1.57	1.51	2.01	5.95
Merged-chr2-113453722-2	chr2	113453627	113453827	+	920.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	12663.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	15.34	2.01	4.56	0.8	12.68	15.05	14.95	9.08	17.31	18.58	17.59	6.58
Merged-chr9-56100198-3	chr9	56100111	56100311	+	920.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	10235.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	21.8	16.1	10.84	10.05	16.77	15.68	14.62	14.13	12.98	10.54	9.55	11.9
Merged-chr9-122886913-3	chr9	122886815	122887015	+	920.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1556.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	10.9	9.56	19.4	15.28	14.73	12.86	6.64	12.39	14.55	21.59	28.14	13.16
Merged-chr3-106482560-3	chr3	106482456	106482656	+	920.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	106.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	12.92	14.34	8.56	12.07	14.32	13.8	11.63	10.57	14.16	12.55	19.09	15.35
Merged-chr8-70854017-1	chr8	70853917	70854117	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032397, intron 3 of 9)	intron (NM_032397, intron 3 of 9)	2991.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	5.25	4.28	1.71	6.44	5.32	7.84	2.99	6.42	4.33	8.54	4.02	1.57
Merged-chr14-62800218-1	chr14	62800118	62800318	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045503, intron 2 of 6)	MLT2B4|LTR|ERVL	-37472.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	2.02	4.53	5.7	2.41	4.91	6.59	12.29	10.29	3.74	3.01	5.53	2.19
Merged-chr19-5847359-1	chr19	5847259	5847459	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1879.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.25	5.03	6.85	4.02	2.45	5.64	6.31	6.2	6.29	3.51	4.52	6.58
Merged-chr10-56792571-1	chr10	56792471	56792671	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	360590.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	4.44	5.03	3.42	6.44	10.64	3.76	8.3	8.86	10.62	6.03	4.02	6.27
Merged-chr2-25256626-1	chr2	25256526	25256726	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_177344)	TTS (NM_177344)	1187.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	18.98	18.36	18.25	11.26	0.0	2.2	0.66	0.79	0.39	2.01	0.0	0.63
Merged-chr10-79994701-2	chr10	79994624	79994824	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2884.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	2.02	1.51	5.7	1.61	0.82	1.88	5.98	1.71	4.33	3.51	4.52	8.14
Merged-chr5-123827749-1	chr5	123827649	123827849	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37767.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	5.65	4.02	7.42	10.46	2.45	10.35	2.99	8.69	6.29	4.52	9.55	7.21
Merged-chr2-44313876-1	chr2	44313776	44313976	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-248552.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	3.63	0.5	1.14	8.85	5.32	3.45	6.31	13.71	5.9	8.54	11.05	3.76
Merged-chr4-3724899-3	chr4	3724798	3724998	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	9934.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	14.94	9.81	15.4	19.31	26.59	22.58	9.97	20.83	15.93	23.1	33.67	18.48
Merged-chr3-41587768-3	chr3	41587670	41587870	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22890.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	16.96	9.56	22.82	17.29	33.55	18.81	32.22	64.18	12.59	14.56	21.1	9.4
Merged-chr1-56902943-1	chr1	56902843	56903043	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	68391.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.4	0.0	1.14	0.0	7.36	3.14	9.3	9.17	0.39	1.51	3.52	0.63
Merged-chr2-31075366-3	chr2	31075277	31075477	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	21123.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	13.33	10.82	18.25	7.24	27.0	26.03	22.26	23.3	19.28	15.57	13.57	10.96
Merged-chr11-72215625-3	chr11	72215524	72215724	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026068)	promoter-TSS (NM_026068)	-32.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	18.98	20.88	11.98	22.93	13.5	10.98	3.99	12.5	26.16	19.58	19.09	9.08
Merged-chr1-79762994-3	chr1	79762891	79763091	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1222.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	11.71	9.06	13.69	7.64	20.86	15.68	13.95	24.25	43.07	45.69	62.31	38.22
Merged-chr5-130030010-1	chr5	130029910	130030110	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007761, intron 1 of 5)	MTD|LTR|ERVL-MaLR	704.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	2.02	2.52	9.7	4.42	8.18	2.51	1.99	11.05	6.29	4.02	4.52	4.07
Merged-chr4-87700676-1	chr4	87700576	87700776	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	105647.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.63	2.01	8.56	10.46	2.86	3.76	9.97	7.18	4.92	2.01	6.53	5.33
Merged-chr1-182368948-1	chr1	182368848	182369048	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27342.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.81	3.27	0.57	2.41	16.77	7.84	6.98	9.42	14.16	5.02	8.54	8.14
Merged-chr10-69240757-1	chr10	69240657	69240857	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	27563.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.63	3.02	3.42	1.61	4.09	5.02	5.31	7.82	11.01	3.01	9.04	2.82
Merged-chr3-121580118-3	chr3	121579997	121580197	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47753.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	8.48	9.06	7.99	15.28	25.77	16.31	11.29	19.12	17.51	15.57	28.14	16.6
Merged-chr11-49901798-3	chr11	49901705	49901905	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347462)	promoter-TSS (NM_001347462)	-30.0	NM_029004	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	8.88	11.82	7.42	11.26	11.45	18.5	11.96	10.93	20.06	23.6	29.14	17.54
Merged-chr18-80041831-3	chr18	80041717	80041917	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5078.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	16.96	15.34	18.25	17.29	14.73	25.4	5.98	20.16	19.87	21.09	17.08	11.59
Merged-chr11-120515709-3	chr11	120515564	120515764	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15063.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	14.94	12.58	9.7	16.89	13.09	21.32	9.3	11.38	18.69	15.57	15.58	10.02
Merged-chr4-124700616-3	chr4	124700523	124700723	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010213)	promoter-TSS (NM_010213)	-76.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	22.21	12.58	17.11	10.86	28.64	12.86	23.25	15.93	26.75	22.09	12.56	9.71
Merged-chr19-59036967-2	chr19	59036867	59037067	+	919.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	39102.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	13.33	18.61	36.51	12.87	16.36	16.93	7.64	10.85	15.34	7.03	6.53	3.45
Merged-chr5-105586905-2	chr5	105586808	105587008	+	919.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	67437.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.46	6.29	10.84	16.09	11.45	4.39	16.94	17.69	11.21	12.55	19.09	10.65
Merged-chr17-26234676-3	chr17	26234574	26234774	+	919.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	B2_Mm2|SINE|B2	9568.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	15.75	22.64	22.82	11.66	24.14	20.07	5.65	7.71	24.19	31.13	24.12	22.56
Merged-chr7-100458353-3	chr7	100458270	100458470	+	919.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 31 of 32)	intron (NM_001017985, intron 31 of 32)	-14621.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	31.9	31.19	41.64	46.25	42.96	30.73	17.94	32.55	14.16	9.54	33.67	10.96
Merged-chr11-4848851-4	chr11	4848745	4848945	+	919.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010898, intron 1 of 15)	CpG	699.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	7.67	13.83	9.7	4.83	12.68	15.05	5.98	10.93	18.1	27.11	19.6	11.9
Merged-chr1-64119847-4	chr1	64119678	64119878	+	919.8541869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	1611.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	12.11	8.3	11.41	7.64	11.45	20.7	16.28	9.81	10.82	25.11	13.57	7.83
Merged-chr18-88823977-3	chr18	88823881	88824081	+	919.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70226.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	8.88	15.34	11.98	11.66	13.91	20.07	25.24	24.31	22.03	20.08	32.16	25.06
Merged-chr16-24933457-2	chr16	24933360	24933560	+	919.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126179.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	2.02	5.53	6.28	8.04	7.77	6.9	5.31	11.02	16.72	11.05	12.56	5.64
Merged-chr11-70437191-2	chr11	70437099	70437299	+	919.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 6 of 14)	intron (NM_145429, intron 6 of 14)	-1056.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	2.02	10.56	3.42	5.63	10.23	16.62	5.31	14.07	20.46	28.62	31.66	7.52
Merged-chr8-108316391-3	chr8	108316309	108316509	+	919.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	268268.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	12.11	12.07	14.83	12.47	12.68	12.54	11.63	13.57	19.87	10.54	15.07	6.58
Merged-chr10-20060811-2	chr10	20060700	20060900	+	919.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-88120.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	14.94	11.32	9.7	14.88	16.77	16.62	11.63	8.61	12.0	4.02	5.53	5.33
Merged-chr2-130930137-1	chr2	130930037	130930237	+	919.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009730, intron 1 of 28)	intron (NM_009730, intron 1 of 28)	23642.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	1.62	1.76	2.28	4.02	18.41	10.98	15.61	22.43	0.2	0.5	1.51	2.19
Merged-chr10-111673039-7	chr10	111672953	111673153	+	919.780945	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78780.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	5.25	6.54	5.7	8.45	7.36	6.27	5.65	10.18	15.34	9.04	12.56	7.52
Merged-chr4-55964189-3	chr4	55964089	55964289	+	919.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-431714.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.69	11.07	17.11	17.29	33.14	37.0	13.95	28.37	31.67	29.62	28.64	10.34
Merged-chr13-58687834-3	chr13	58687714	58687914	+	919.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	74497.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	18.98	11.32	14.83	19.71	11.05	12.54	13.29	11.97	14.16	20.08	14.07	10.34
Merged-chr12-73359736-1	chr12	73359636	73359836	+	919.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49827.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.83	1.51	0.0	3.22	2.86	3.14	6.31	5.44	22.03	8.54	31.66	12.22
Merged-chr2-91723210-2	chr2	91723103	91723303	+	919.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6935.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	5.65	3.52	6.85	2.41	15.14	14.42	13.29	12.73	12.39	8.03	2.51	8.46
Merged-chr14-70792781-1	chr14	70792681	70792881	+	919.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18400.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.85	3.02	4.56	5.63	15.96	6.27	13.29	13.09	7.28	4.02	7.54	2.19
Merged-chr13-112602793-2	chr13	112602696	112602896	+	919.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145885, intron 18 of 21)	intron (NM_001145885, intron 18 of 21)	-22134.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	4.04	4.78	9.13	5.63	8.18	2.51	9.63	11.89	27.73	13.56	25.63	19.42
Merged-chr15-36716096-6	chr15	36715968	36716168	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74864.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	7.27	5.03	6.85	5.23	6.55	15.37	3.99	9.56	14.55	26.61	20.6	13.16
Merged-chr13-52578858-4	chr13	52578699	52578899	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4638.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	1.21	1.76	2.28	3.22	2.86	3.45	7.64	5.47	6.69	3.01	15.07	11.28
Merged-chr2-21215508-3	chr2	21215400	21215600	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177588)	TTS (NM_177588)	9776.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	15.75	17.36	28.52	28.56	8.59	15.37	9.3	8.92	13.96	8.03	25.63	8.77
Merged-chr10-94116466-3	chr10	94116362	94116562	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-31469.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	14.54	12.07	10.84	12.87	15.55	12.54	2.99	8.24	22.62	24.6	23.62	16.6
Merged-chr6-26454554-3	chr6	26454456	26454656	+	919.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	523130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	8.48	11.07	19.4	37.0	15.96	16.93	28.57	9.67	18.69	11.55	22.11	15.66
Merged-chr1-36684314-3	chr1	36684214	36684414	+	919.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1131.0	NM_201365	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	13.33	11.32	11.41	8.04	15.55	26.65	11.29	14.72	18.49	22.59	34.67	13.78
Merged-chr19-41932751-3	chr19	41932646	41932846	+	919.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023740)	promoter-TSS (NM_023740)	568.0	NM_001164561	66583.0	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	15.34	8.8	13.12	4.83	13.91	23.2	9.97	2.47	17.9	16.07	14.57	9.4
Merged-chr8-124247740-2	chr8	124247641	124247841	+	919.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	MTD|LTR|ERVL-MaLR	16347.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	8.08	4.02	7.99	13.27	10.64	2.51	12.62	12.39	13.57	10.54	18.59	18.17
Merged-chr10-118588220-3	chr10	118588140	118588340	+	919.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31715.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	12.11	5.03	7.42	12.07	19.23	18.81	12.29	21.76	11.8	19.58	15.58	11.59
Merged-chr19-32491211-3	chr19	32491152	32491352	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 1 of 4)	intron (NM_010799, intron 1 of 4)	5483.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.85	8.8	10.27	13.27	10.23	7.21	17.61	8.66	10.42	5.02	11.05	6.89
Merged-chr2-34777071-5	chr2	34776945	34777145	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022310)	TTS (NM_022310)	4955.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	6.86	9.81	10.27	8.04	4.09	11.92	2.66	4.09	14.36	14.56	11.56	9.71
Merged-chr9-75625704-1	chr9	75625604	75625804	+	919.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027309)	promoter-TSS (NM_027309)	-28.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	4.04	7.8	1.14	7.64	5.73	4.39	5.98	1.88	13.37	19.08	20.1	27.25
Merged-chr15-76799631-3	chr15	76799524	76799724	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	18546.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	14.13	16.35	17.11	9.65	17.59	20.38	20.93	20.16	11.01	10.54	19.6	3.45
Merged-chr13-66906104-3	chr13	66906003	66906203	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026219)	promoter-TSS (NM_026219)	688.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	14.13	15.09	13.12	8.85	9.82	22.26	14.28	22.65	62.74	35.65	50.25	24.12
Merged-chr11-19839109-3	chr11	19839019	19839219	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-85323.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	11.71	5.28	18.25	17.7	15.96	19.44	14.62	19.49	19.08	14.06	25.12	11.9
Merged-chr9-108692526-2	chr9	108692424	108692624	+	919.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008924, exon 1 of 11)	exon (NM_008924, exon 1 of 11)	381.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	8.88	14.59	18.83	11.66	8.59	15.05	13.95	7.57	8.06	11.55	16.08	8.14
Merged-chr7-125618166-3	chr7	125618054	125618254	+	919.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	14725.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	19.79	14.84	33.09	26.14	14.32	10.35	29.23	41.3	12.39	17.07	30.65	10.96
Merged-chr12-36360265-3	chr12	36360161	36360361	+	919.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-21189.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	12.11	12.58	31.38	27.75	4.5	4.08	14.28	26.24	23.41	11.55	26.63	15.04
Merged-chr11-102424892-3	chr11	102424804	102425004	+	919.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5418.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	10.9	10.56	13.12	11.66	28.23	18.19	6.64	16.57	29.9	31.13	19.09	26.0
Merged-chr14-14985439-3	chr14	14985354	14985554	+	919.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 30 of 34)	intron (NM_001195229, intron 30 of 34)	164639.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	7.67	12.07	5.7	14.08	15.55	8.47	7.64	9.53	15.54	12.05	18.09	14.1
Merged-chr15-98389967-3	chr15	98389880	98390080	+	919.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8465.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	10.9	11.57	15.97	2.82	17.59	19.44	26.24	26.52	23.6	23.1	30.15	10.96
Merged-chr1-37314555-2	chr1	37314452	37314652	+	919.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	14714.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	10.09	14.84	17.11	15.69	7.77	14.74	18.93	21.93	6.69	5.02	20.6	3.45
Merged-chr8-46828600-2	chr8	46828486	46828686	+	919.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	88841.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.06	5.53	7.99	10.46	15.55	21.01	8.64	6.81	18.1	17.57	16.08	9.08
Merged-chr15-84987450-4	chr15	84987357	84987557	+	919.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	514.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	7.67	6.54	10.84	12.47	11.05	14.42	15.28	16.77	16.72	16.57	11.05	13.78
Merged-chr8-27043462-3	chr8	27043389	27043589	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039077, intron 1 of 4)	intron (NM_001039077, intron 1 of 4)	934.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	13.73	16.6	14.26	5.23	9.0	19.76	5.65	10.85	12.39	21.59	11.56	8.77
Merged-chr5-34637154-3	chr5	34637067	34637267	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356979)	promoter-TSS (NM_001356979)	45.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	18.57	15.09	9.7	11.66	17.18	16.93	6.64	15.39	23.8	16.57	27.13	10.02
Merged-chr7-18840686-3	chr7	18840605	18840805	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153760, intron 1 of 4)	intron (NM_153760, intron 1 of 4)	739.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	5.25	9.06	17.11	13.27	14.73	43.59	25.91	27.95	46.42	32.64	54.27	27.88
Merged-chr4-118106899-3	chr4	118106777	118106977	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	28069.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	19.38	9.81	27.95	24.53	41.32	47.66	26.24	44.52	11.21	13.05	8.04	8.14
Merged-chr14-50875909-3	chr14	50875764	50875964	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5310.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.25	9.06	12.55	7.64	9.82	14.11	12.62	13.46	29.7	20.59	18.09	10.96
Merged-chr3-138521994-3	chr3	138521857	138522057	+	919.555542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4234.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	2.02	7.8	3.99	3.62	7.36	9.72	5.65	12.22	5.9	5.52	14.07	13.16
Merged-chr7-88279735-3	chr7	88279601	88279801	+	919.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 1 of 6)	B1_Mus1|SINE|Alu	1616.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	9.29	10.56	9.7	16.09	8.59	15.99	11.63	11.47	21.44	12.55	16.58	15.35
Merged-chr16-70329680-3	chr16	70329569	70329769	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15720.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	13.73	11.32	13.69	7.24	11.86	10.98	28.9	28.18	34.81	36.65	62.31	27.25
Merged-chr14-54382691-4	chr14	54382509	54382709	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	MLTR14|LTR|ERV1	21768.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	8.48	10.31	15.4	12.87	16.36	14.74	31.22	27.2	6.1	10.04	9.04	5.33
Merged-chr18-73800055-2	chr18	73799961	73800161	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145494, intron 3 of 15)	intron (NM_145494, intron 3 of 15)	15331.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	23.42	14.34	18.83	20.11	14.73	11.29	9.3	24.5	1.38	1.51	3.52	1.57
Merged-chr15-28420910-2	chr15	28420795	28420995	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 66 of 78)	intron (NM_133365, intron 66 of 78)	217129.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.85	3.52	1.71	5.63	4.09	17.87	15.61	11.94	7.67	13.56	13.57	7.21
Merged-chrX-12840399-1	chrX	12840299	12840499	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78121.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	4.04	5.03	6.28	10.05	7.77	5.33	6.64	7.99	3.34	1.51	9.04	4.39
Merged-chr10-63174606-1	chr10	63174506	63174706	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	29346.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	10.5	2.77	1.14	4.83	13.09	7.53	2.99	11.72	1.97	3.01	5.53	2.82
Merged-chr17-50024731-2	chr17	50024634	50024834	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165763.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.06	12.58	9.13	2.01	15.96	19.76	4.65	7.54	16.72	12.05	8.04	3.13
Merged-chr17-74529369-3	chr17	74529252	74529452	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 1 of 72)	intron (NM_007566, intron 1 of 72)	1057.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	12.52	11.07	8.56	9.65	12.27	10.98	20.59	11.55	14.16	12.05	24.12	15.98
Merged-chr17-71292142-1	chr17	71292042	71292242	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	18869.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.86	5.79	1.14	2.41	15.55	12.23	2.99	9.67	6.69	10.04	8.54	1.57
Merged-chr7-73531742-3	chr7	73531621	73531821	+	919.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	B4A|SINE|B4	10025.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	12.52	13.58	10.84	3.62	22.09	16.31	8.3	17.05	19.08	9.54	23.11	10.34
Merged-chr1-155049204-3	chr1	155049106	155049306	+	919.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34058.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	23.02	13.83	11.98	12.47	17.18	18.81	8.97	14.66	20.06	11.55	26.13	13.47
Merged-chr8-25992849-3	chr8	25992695	25992895	+	919.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029037, intron 1 of 4)	ORR1G|LTR|ERVL-MaLR	1326.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	10.9	7.55	4.56	6.44	17.18	16.62	7.97	13.26	13.18	14.56	18.59	15.04
Merged-chr5-121251999-4	chr5	121251810	121252010	+	919.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	31691.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.65	4.28	14.26	8.04	11.86	6.59	9.3	11.38	7.87	8.03	8.54	11.28
Merged-chr12-86950787-3	chr12	86950694	86950894	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3451.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	8.08	11.32	12.55	11.26	26.59	27.59	19.27	38.47	27.93	18.58	24.12	10.34
Merged-chr13-3637073-3	chr13	3636969	3637169	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267724, intron 1 of 3)	intron (NM_001267724, intron 1 of 3)	3037.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	11.71	23.64	13.12	17.29	24.55	10.35	8.3	17.89	26.36	13.05	23.11	15.66
Merged-chr9-41157554-6	chr9	41157398	41157598	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_176860, exon 1 of 14)	5' UTR (NM_176860, exon 1 of 14)	564.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.06	16.85	5.7	11.66	9.0	15.05	13.95	9.17	21.64	21.09	20.1	16.6
Merged-chr4-43256364-3	chr4	43256276	43256476	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 29 of 39)	intron (NM_001081413, intron 29 of 39)	-10783.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	11.71	14.34	15.97	16.49	15.14	13.8	10.3	13.63	13.37	12.55	19.09	6.89
Merged-chr13-37965619-3	chr13	37965515	37965715	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28593.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	37.15	26.41	31.38	37.81	38.86	50.8	59.13	50.07	14.55	10.54	5.02	7.21
Merged-chr1-95319097-3	chr1	95318998	95319198	+	919.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	5470.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	23.02	9.81	15.4	8.45	27.41	13.48	19.93	17.3	28.32	20.59	24.12	8.46
Merged-chr17-35779738-2	chr17	35779643	35779843	+	919.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	7293.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	13.33	5.53	6.85	4.42	11.45	7.84	15.28	16.29	41.89	54.23	38.19	22.24
Merged-chr3-109123207-5	chr3	109123125	109123325	+	919.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172685)	promoter-TSS (NM_172685)	76.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	6.46	9.56	22.82	7.24	11.86	13.17	13.62	16.65	18.1	18.58	15.58	16.29
Merged-chr19-36928140-3	chr19	36928054	36928254	+	919.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2075.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	26.25	18.36	11.98	19.31	8.59	10.03	9.63	15.14	18.29	7.03	18.09	10.34
Merged-chr5-96803259-3	chr5	96803158	96803358	+	919.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	9873.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	20.59	11.57	10.27	14.48	11.45	28.22	20.93	16.51	17.31	15.06	29.14	6.27
Merged-chrX-38439854-3	chrX	38439746	38439946	+	919.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 3 of 9)	MIRc|SINE|MIR	16614.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	18.57	11.07	8.56	17.7	22.91	15.99	15.28	39.98	20.46	30.63	33.16	12.84
Merged-chr18-55209201-3	chr18	55209100	55209300	+	919.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-216609.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	9.69	13.08	21.68	20.51	18.41	9.72	9.97	23.58	24.78	23.6	19.6	11.59
Merged-chr18-68905855-2	chr18	68905756	68905956	+	919.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	45672.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	12.92	12.58	15.97	17.29	15.14	22.26	11.96	16.18	1.57	0.0	1.51	0.63
Merged-chr11-111227477-2	chr11	111227378	111227578	+	919.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161314.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.25	5.53	3.42	5.63	23.73	22.89	9.63	24.62	17.7	15.06	20.6	8.46
Merged-chr1-131915872-3	chr1	131915760	131915960	+	919.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	5402.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	8.48	13.08	35.37	27.35	23.73	26.65	26.91	28.63	21.05	8.54	18.09	11.28
Merged-chr3-87500327-3	chr3	87500215	87500415	+	919.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001113238, exon 12 of 12)	3' UTR (NM_001113238, exon 12 of 12)	-25263.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	29.48	21.13	29.66	28.96	14.32	27.28	25.58	26.1	10.23	7.53	9.04	6.89
Merged-chr1-176824614-3	chr1	176824515	176824715	+	919.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9955.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	6.46	5.79	15.97	12.87	4.5	3.14	7.97	10.6	21.44	17.07	24.62	7.83
Merged-chr7-25627510-1	chr7	25627410	25627610	+	919.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-114.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	6.06	4.78	1.71	3.22	11.86	9.72	16.28	15.67	3.54	5.52	3.52	4.07
Merged-chr6-82805178-3	chr6	82805072	82805272	+	919.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	-30718.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	16.15	10.31	22.82	19.71	13.91	15.68	23.25	27.2	12.19	7.03	14.07	3.76
Merged-chr17-10371583-3	chr17	10371478	10371678	+	919.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46976.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	27.05	12.07	21.68	4.42	13.09	21.64	6.31	11.52	16.52	16.57	15.58	7.52
Merged-chr1-183510931-3	chr1	183510821	183511021	+	919.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91673.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	13.73	14.84	16.54	26.55	21.68	21.01	18.27	36.67	19.28	8.54	14.07	7.83
Merged-chr15-83410403-3	chr15	83410310	83410510	+	919.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	22440.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	15.34	6.04	11.41	11.66	24.14	29.16	19.93	25.96	15.34	14.56	21.61	12.53
Merged-chrX-7839328-3	chrX	7839234	7839434	+	919.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-2497.0	NM_001290536	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	12.11	12.07	21.68	16.09	22.91	18.81	10.3	23.1	14.36	13.05	19.09	8.46
Merged-chr9-50560709-3	chr9	50560579	50560779	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025687, intron 1 of 4)	intron (NM_025687, intron 1 of 4)	589.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	28.67	23.9	20.54	9.65	31.5	54.88	17.94	12.9	21.83	37.66	21.1	8.46
Merged-chr7-114526451-3	chr7	114526350	114526550	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 11 of 15)	Lx7|LINE|L1	36522.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	13.33	11.57	19.4	20.11	8.18	14.42	11.29	17.41	22.03	30.13	34.17	6.89
Merged-chr14-70175899-2	chr14	70175837	70176037	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	878.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	11.31	6.29	20.54	18.5	17.18	14.11	5.65	16.49	15.74	18.58	20.1	18.48
Merged-chr13-60840310-3	chr13	60840208	60840408	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24108.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	14.54	2.77	15.97	13.27	22.5	6.59	18.27	22.18	13.37	3.51	20.1	10.34
Merged-chr7-80341039-3	chr7	80340982	80341182	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-863.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	14.13	10.56	10.27	4.02	7.36	10.66	5.65	6.39	12.39	18.58	19.09	9.08
Merged-chrX-74328931-3	chrX	74328833	74329033	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008883)	promoter-TSS (NM_008883)	-133.0	NM_008883	18846.0	Mm.1685	NM_008883	ENSMUSG00000031398	Plxna3	PlexA3|Plxa3|Plxn3|Plxn4|SEX|mKIAA4078	plexin A3	protein-coding	16.15	17.86	11.41	15.69	15.55	26.03	29.9	16.37	12.78	12.05	8.04	10.02
Merged-chr14-76703610-3	chr14	76703524	76703724	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26056.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	16.56	10.82	11.98	14.88	5.32	10.35	12.62	8.05	29.11	20.08	27.64	13.47
Merged-chr9-32694415-3	chr9	32694310	32694510	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1632.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	20.19	16.85	5.13	14.48	14.73	39.2	20.26	28.18	18.69	7.03	15.07	4.07
Merged-chr5-76565526-3	chr5	76565432	76565632	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359370, intron 17 of 19)	B3A|SINE|B2	-26182.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	16.15	11.32	23.39	10.86	26.18	21.64	10.3	19.49	31.67	20.59	31.66	8.14
Merged-chr14-70894181-3	chr14	70894095	70894295	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302095, intron 1 of 6)	intron (NM_001302095, intron 1 of 6)	4088.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	16.15	16.35	5.13	14.08	9.0	10.35	15.94	9.5	18.88	17.57	16.08	7.21
Merged-chr9-82888878-3	chr9	82888781	82888981	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081216, intron 29 of 39)	intron (NM_001081216, intron 29 of 39)	59075.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	16.96	21.88	25.67	22.93	14.32	11.29	7.97	30.53	30.68	20.08	22.61	17.86
Merged-chr1-184562463-3	chr1	184562359	184562559	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4768.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	14.54	8.05	25.1	12.07	22.5	37.0	7.97	20.52	17.51	14.56	15.07	11.28
Merged-chr10-34172998-4	chr10	34172882	34173082	+	919.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	34569.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	8.48	12.83	9.13	4.02	4.5	15.37	3.99	6.2	15.93	16.57	12.56	9.4
Merged-chr11-100327950-3	chr11	100327851	100328051	+	919.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6456.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	16.96	12.32	6.85	25.74	13.91	6.59	4.65	12.25	17.9	8.54	16.08	11.59
Merged-chr8-72420952-3	chr8	72420850	72421050	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122832, intron 1 of 15)	CpG	524.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	7.67	10.82	3.99	7.24	16.36	17.87	12.95	9.48	17.7	11.55	13.57	10.34
Merged-chr6-72153599-3	chr6	72153509	72153709	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011375, exon 7 of 7)	exon (NM_011375, exon 7 of 7)	-30412.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	11.31	13.83	13.69	14.88	30.68	15.99	17.61	40.88	18.69	21.59	19.09	8.77
Merged-chr17-57335423-3	chr17	57335310	57335510	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-23276.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	27.46	8.8	4.56	20.91	9.41	15.05	11.29	9.03	13.57	26.61	16.08	13.47
Merged-chr16-23225304-3	chr16	23225189	23225389	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252505)	promoter-TSS (NM_001252505)	195.0	NR_152126	320099.0	Mm.326729	NR_152126		BC106179	-	cDNA sequence BC106179	ncRNA	16.15	5.53	10.27	8.85	14.73	1.88	10.3	11.61	8.65	10.54	11.05	13.16
Merged-chr13-59011697-3	chr13	59011580	59011780	+	919.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	203983.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	12.92	8.55	15.97	28.15	28.64	18.5	15.61	30.87	16.52	16.57	25.63	16.29
Merged-chr1-52648316-2	chr1	52648229	52648429	+	919.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024590, intron 7 of 8)	intron (NR_024590, intron 7 of 8)	17624.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	6.46	4.53	4.56	2.41	11.45	10.35	8.97	14.69	14.95	15.06	17.59	12.84
Merged-chr4-134099436-3	chr4	134099341	134099541	+	919.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-3142.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	17.36	13.83	18.83	21.32	13.91	21.64	4.98	6.93	36.58	32.13	43.72	20.99
Merged-chr13-107832957-3	chr13	107832865	107833065	+	919.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	57099.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	23.82	12.07	10.84	6.03	9.41	34.49	6.64	13.99	53.11	47.7	61.3	31.01
Merged-chr8-124250988-3	chr8	124250894	124251094	+	919.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	19600.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	9.69	10.31	45.64	28.56	22.5	18.81	16.61	25.6	48.39	57.74	94.97	41.66
Merged-chr2-9989853-3	chr2	9989746	9989946	+	919.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58763.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	12.52	15.59	30.23	28.15	13.91	12.54	12.95	19.79	12.98	12.55	27.13	14.1
Merged-chr2-127397917-3	chr2	127397827	127398027	+	919.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27272.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	19.38	14.09	18.25	16.09	11.05	10.66	6.64	14.27	12.78	10.54	22.61	15.98
Merged-chr7-67528365-4	chr7	67528289	67528489	+	919.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	116847.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	12.92	9.06	7.42	6.03	11.05	5.33	4.32	7.18	5.11	9.54	10.55	2.82
Merged-chr10-43742874-3	chr10	43742770	43742970	+	919.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-3288.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	10.5	10.31	0.57	7.64	7.77	10.03	8.97	9.87	11.41	12.55	17.59	8.46
Merged-chr4-121041107-3	chr4	121040991	121041191	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007741, intron 2 of 31)	intron (NM_007741, intron 2 of 31)	1525.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	20.59	9.06	10.27	16.49	20.05	22.58	8.64	16.07	26.36	26.61	40.2	18.48
Merged-chr19-16200452-1	chr19	16200352	16200552	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	36354.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	4.04	3.52	6.85	7.24	3.27	4.39	7.97	8.02	6.69	3.51	8.04	2.82
Merged-chr17-86145156-4	chr17	86144999	86145199	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030133)	promoter-TSS (NM_030133)	76.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	37.55	24.65	17.68	32.18	37.23	19.76	31.89	25.54	37.37	28.62	24.62	13.78
Merged-chr5-120775880-1	chr5	120775780	120775980	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145226, intron 1 of 15)	RLTR11A|LTR|ERVK	1779.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	5.65	5.28	4.56	6.44	13.09	13.48	3.65	3.62	6.1	7.53	6.03	6.58
Merged-chr6-136904448-1	chr6	136904348	136904548	+	919.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17732.0	NM_026983	69187.0	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.81	1.26	0.0	0.0	0.41	0.0	1.0	0.39	17.11	7.03	4.52	9.71
Merged-chr2-31025715-3	chr2	31025613	31025813	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177649)	TTS (NM_001177649)	43434.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	12.11	11.32	17.68	10.86	20.05	20.38	16.61	15.45	13.18	12.55	14.07	13.78
Merged-chr19-41265845-3	chr19	41265744	41265944	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1840.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	11.71	7.55	18.25	14.08	14.32	13.8	12.62	12.5	20.46	30.63	28.14	18.17
Merged-chr4-134714164-3	chr4	134714056	134714256	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-9866.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	14.94	13.83	13.69	6.03	19.64	21.32	9.97	15.79	36.78	13.56	29.14	7.52
Merged-chr4-132007373-3	chr4	132007263	132007463	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001128606, exon 2 of 18)	exon (NM_001128606, exon 2 of 18)	41715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	10.09	10.82	20.54	16.09	19.64	12.54	7.64	14.3	26.16	10.54	17.08	8.77
Merged-chr2-174109870-1	chr2	174109770	174109970	+	919.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-481.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	10.5	8.05	5.13	8.45	11.05	5.33	2.66	7.57	7.47	15.57	14.07	11.9
Merged-chr17-37085346-1	chr17	37085246	37085446	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146477, exon 1 of 1)	exon (NM_146477, exon 1 of 1)	890.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	5.25	10.82	11.41	8.85	2.05	1.25	2.66	2.94	0.98	1.0	1.51	1.88
Merged-chr6-43644044-1	chr6	43643944	43644144	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	22234.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	3.23	1.26	5.7	4.02	9.41	0.0	6.31	12.42	3.93	4.02	3.01	2.82
Merged-chr6-37231306-3	chr6	37231208	37231408	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	68668.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.23	5.28	17.68	16.49	18.41	8.47	26.91	60.53	14.75	17.07	27.13	22.56
Merged-chr3-36496954-3	chr3	36496862	36497062	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9847.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	17.77	10.56	7.42	11.66	11.45	15.68	10.96	12.87	17.7	19.08	18.59	10.96
Merged-chr15-39198257-1	chr15	39198157	39198357	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-29.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.63	2.01	1.14	0.8	8.18	2.82	4.65	3.31	2.36	1.0	2.01	5.64
Merged-chr1-80676422-3	chr1	80676323	80676523	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-11071.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	12.11	15.09	8.56	12.47	17.18	23.52	7.97	18.81	21.64	14.06	24.12	10.34
Merged-chr3-32396326-1	chr3	32396226	32396426	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30661.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	2.42	3.52	2.28	4.83	5.32	2.51	8.97	8.13	5.51	7.53	13.06	4.7
Merged-chr17-53980098-1	chr17	53979998	53980198	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018751, intron 1 of 7)	L1_Mur3|LINE|L1	10533.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	8.48	5.53	7.99	9.65	13.91	9.41	6.64	18.67	0.0	0.0	1.51	0.0
Merged-chr16-28517967-3	chr16	28517883	28518083	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46512.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	23.02	22.89	19.4	28.15	44.59	45.15	48.5	44.5	11.8	7.03	5.02	9.71
Merged-chr13-95494536-1	chr13	95494436	95494636	+	919.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15881.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	0.4	0.5	0.57	0.0	0.41	0.0	0.0	0.0	9.83	17.07	4.02	2.19
Merged-chr12-3283164-3	chr12	3283064	3283264	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	26805.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	12.11	10.56	20.54	12.47	24.14	25.09	13.95	19.74	17.11	19.58	22.11	10.65
Merged-chr2-147013907-2	chr2	147013803	147014003	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	904.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	10.09	6.04	15.4	7.24	4.5	9.09	11.63	8.72	14.95	25.61	12.06	11.28
Merged-chr16-87597721-3	chr16	87597626	87597826	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44396.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	8.88	9.31	21.11	14.08	17.59	19.76	9.97	18.5	19.28	9.04	10.05	17.54
Merged-chr11-115079231-2	chr11	115079127	115079327	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12204.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	16.56	5.03	19.4	9.25	2.45	0.31	7.31	8.21	5.31	2.01	12.06	5.01
Merged-chr14-62845236-3	chr14	62845141	62845341	+	918.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	7520.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	31.5	18.11	15.97	16.89	5.32	16.62	11.63	19.54	19.28	11.05	28.14	9.4
Merged-chr2-144217439-3	chr2	144217336	144217536	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28146.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	4.44	11.32	13.12	2.01	11.45	16.31	9.63	9.9	18.69	14.06	12.56	12.53
Merged-chr12-80057663-3	chr12	80057560	80057760	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55353.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	23.02	10.06	13.69	8.85	14.32	18.5	10.3	9.53	37.76	32.13	32.66	17.23
Merged-chr7-35585659-3	chr7	35585614	35585814	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-132.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	14.13	11.32	9.13	12.87	17.18	22.26	16.28	23.1	13.57	10.54	9.55	8.77
Merged-chr4-137370606-3	chr4	137370561	137370761	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12902.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	12.11	4.53	11.41	6.44	13.91	18.5	8.97	6.06	12.39	4.02	11.05	5.01
Merged-chr11-70970751-4	chr11	70970601	70970801	+	918.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_075087)	promoter-TSS (NR_075087)	501.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	4.85	7.04	7.42	11.66	11.05	11.92	7.97	7.82	13.18	6.03	12.06	7.52
Merged-chr19-56689395-2	chr19	56689286	56689486	+	918.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32986.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.81	3.52	8.56	7.24	8.59	12.23	6.31	9.25	15.14	6.53	16.58	1.57
Merged-chr18-20815556-3	chr18	20815447	20815647	+	918.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69143.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	19.79	16.1	13.12	5.23	19.23	27.28	23.58	23.89	19.28	24.6	36.18	13.78
Merged-chr15-63497355-3	chr15	63497248	63497448	+	918.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17740.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	12.11	11.32	11.41	8.45	15.14	12.86	16.28	23.69	19.08	24.1	18.59	14.1
Merged-chr5-43855010-3	chr5	43854910	43855110	+	918.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13799.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	8.88	18.61	11.98	16.09	44.18	13.8	51.82	54.9	19.28	14.06	24.62	8.14
Merged-chr12-104315793-1	chr12	104315693	104315893	+	918.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101472, intron 1 of 3)	intron (NM_001101472, intron 1 of 3)	1223.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	3.63	2.26	1.14	7.24	16.36	14.42	6.31	18.9	5.9	2.51	8.04	2.82
Merged-chr18-58567988-3	chr18	58567898	58568098	+	918.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11758.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	9.69	15.09	24.53	10.86	34.77	39.51	29.56	25.65	29.11	25.61	20.1	11.9
Merged-chr4-95157850-3	chr4	95157745	95157945	+	918.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105623.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	15.34	17.86	25.67	19.31	14.73	12.23	9.97	19.01	18.69	11.55	32.66	9.08
Merged-chr7-112217399-2	chr7	112217305	112217505	+	918.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-8431.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	18.17	17.61	7.42	14.48	13.09	19.44	14.28	15.42	6.69	6.53	17.59	3.45
Merged-chr6-129001567-3	chr6	129001455	129001655	+	918.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015455, intron 1 of 2)	B3|SINE|B2	8594.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	19.79	14.59	25.1	17.29	22.09	18.19	10.96	18.98	17.11	11.05	23.62	10.02
Merged-chr11-117707031-3	chr11	117706920	117707120	+	918.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 3 of 21)	MTC|LTR|ERVL-MaLR	52731.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	14.94	11.57	23.96	10.05	16.77	22.58	10.63	14.64	13.18	12.05	25.12	10.02
Merged-chr10-99203762-3	chr10	99203664	99203864	+	918.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59467.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	16.96	8.3	14.26	16.89	14.73	14.42	13.62	27.64	14.95	13.56	10.05	14.1
Merged-chr7-24441999-3	chr7	24441883	24442083	+	918.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3699.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	10.5	6.54	8.56	10.46	20.05	23.2	8.64	12.45	31.86	23.6	49.75	24.12
Merged-chr12-35553410-3	chr12	35553360	35553560	+	918.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18471.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	10.5	12.58	18.83	18.9	13.91	15.37	20.26	37.77	15.14	10.04	10.05	7.83
Merged-chr5-105499590-2	chr5	105499491	105499691	+	918.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-19880.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	12.11	11.32	16.54	10.86	17.18	19.44	12.62	7.29	6.88	15.06	10.55	5.64
Merged-chr8-71630758-4	chr8	71630688	71630888	+	918.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106035)	TTS (NR_106035)	318.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	12.11	10.06	11.41	17.29	12.68	19.76	21.92	13.4	13.57	11.55	12.56	11.9
Merged-chr2-30514980-3	chr2	30514872	30515072	+	918.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40773.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	19.38	10.06	28.52	8.45	24.96	13.8	7.97	12.73	21.44	9.04	34.17	15.66
Merged-chr16-37010564-3	chr16	37010440	37010640	+	918.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1246.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	16.56	15.59	10.84	9.65	15.96	11.92	10.3	17.36	15.74	18.08	16.58	20.99
Merged-chr18-24467846-3	chr18	24467753	24467953	+	918.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3018.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	14.54	15.09	8.56	20.11	7.77	20.38	12.95	21.39	24.78	17.07	18.59	11.59
Merged-chr6-108759559-3	chr6	108759462	108759662	+	918.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23497.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	23.02	14.59	33.09	26.95	10.64	17.25	5.65	19.54	19.47	13.05	37.18	7.83
Merged-chr10-44599769-3	chr10	44599661	44599861	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141013.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	12.11	21.13	17.11	19.31	27.0	31.67	7.97	14.92	20.26	22.09	11.05	18.17
Merged-chr11-34783189-3	chr11	34783113	34783313	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	692.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	27.46	19.87	7.99	9.25	34.36	36.06	15.61	23.02	31.47	24.6	25.63	17.23
Merged-chr11-44526871-3	chr11	44526759	44526959	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	7482.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.86	12.07	11.98	2.82	12.68	26.65	9.63	4.63	51.53	42.18	29.65	10.02
Merged-chr2-92058636-3	chr2	92058528	92058728	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34458.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	16.96	23.14	13.12	8.04	13.5	17.87	8.3	14.05	18.88	27.11	25.12	19.11
Merged-chr19-40401386-3	chr19	40401293	40401493	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034962, intron 2 of 22)	MIR|SINE|MIR	917.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	10.9	9.56	17.68	17.29	24.96	21.95	39.53	30.34	15.34	38.66	28.64	10.96
Merged-chr4-101155245-3	chr4	101155139	101155339	+	918.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86201.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	11.31	10.31	10.27	11.26	15.14	10.66	14.28	11.24	18.69	11.05	14.57	7.21
Merged-chr13-93007278-3	chr13	93007174	93007374	+	918.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-66030.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	8.08	10.56	21.68	15.69	7.36	16.62	10.63	15.25	90.28	88.37	90.95	43.86
Merged-chr11-71289692-2	chr11	71289590	71289790	+	918.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4458.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	11.71	10.56	39.36	17.7	0.0	0.0	0.0	0.0	24.19	16.57	29.14	13.16
Merged-chr4-148168523-3	chr4	148168421	148168621	+	918.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7853.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	11.31	12.07	9.13	12.07	14.32	10.66	4.65	9.14	23.6	11.05	10.55	11.9
Merged-chr15-90310512-3	chr15	90310398	90310598	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43212.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	10.5	11.07	14.26	16.09	34.77	24.46	13.95	32.41	21.05	18.58	22.61	8.46
Merged-chr13-6632653-2	chr13	6632548	6632748	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	16123.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	8.88	28.93	22.82	9.65	3.27	9.41	2.66	5.8	10.42	3.01	2.51	4.39
Merged-chr6-142508024-3	chr6	142507951	142508151	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-94.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	12.52	11.57	11.98	16.89	11.05	33.87	30.23	37.07	12.0	12.55	16.08	9.4
Merged-chr6-73240336-1	chr6	73240236	73240436	+	918.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-8169.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	4.85	6.79	1.14	1.21	3.27	0.63	0.66	2.89	33.63	19.58	18.09	10.34
Merged-chr5-97082233-3	chr5	97082151	97082351	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198422, exon 7 of 7)	3' UTR (NM_198422, exon 7 of 7)	29345.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	8.08	6.79	21.68	15.69	15.96	13.8	12.95	19.91	31.67	9.54	27.13	17.23
Merged-chr13-51101592-3	chr13	51101492	51101692	+	918.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	45.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	21.0	13.33	29.09	10.46	8.59	16.62	10.96	14.19	30.09	21.09	15.07	10.02
Merged-chr16-17125166-3	chr16	17125026	17125226	+	918.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358255)	promoter-TSS (NM_001358255)	76.0	NM_183287	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	18.17	10.06	9.7	11.26	22.5	15.37	13.95	19.29	12.39	6.03	13.06	7.21
Merged-chr13-39881293-2	chr13	39881194	39881394	+	918.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	406717.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	2.02	4.28	6.28	2.82	13.09	13.8	11.63	12.56	13.37	16.57	29.14	8.46
Merged-chr18-9556051-3	chr18	9555955	9556155	+	918.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63414.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	14.94	11.82	17.68	5.63	13.91	17.25	9.3	10.35	16.72	16.07	12.56	11.59
Merged-chrX-155184170-4	chrX	155184026	155184226	+	918.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32323.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	7.67	5.03	18.83	6.03	19.64	20.07	19.27	13.43	21.64	14.06	13.57	7.83
Merged-chr2-144188341-3	chr2	144188238	144188438	+	918.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136884, intron 1 of 3)	MIR|SINE|MIR	952.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	18.57	9.06	26.24	12.47	13.91	11.92	12.62	22.85	5.31	11.05	23.11	11.28
Merged-chr2-77280302-3	chr2	77280205	77280405	+	918.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	CpG	287.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	10.09	16.35	14.83	12.07	6.55	18.19	15.61	9.84	18.88	23.1	20.1	15.35
Merged-chr12-32764927-3	chr12	32764811	32765011	+	918.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55424.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.46	5.53	14.83	16.09	15.55	10.03	9.63	19.63	19.28	11.05	9.04	10.34
Merged-chr2-118547832-5	chr2	118547694	118547894	+	918.386658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311140)	promoter-TSS (NM_001311140)	-195.0	NM_001311140	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.44	10.06	8.56	4.83	8.59	13.17	8.3	6.25	9.64	12.05	11.56	8.46
Merged-chr10-24490668-2	chr10	24490564	24490764	+	918.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104778.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.81	2.77	7.99	1.61	10.64	5.02	4.65	11.13	13.37	24.1	17.59	12.53
Merged-chr6-89296558-3	chr6	89296469	89296669	+	918.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10844.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	17.36	13.33	26.24	10.05	15.96	10.66	11.63	18.31	14.95	13.05	10.05	13.47
Merged-chr7-107248830-1	chr7	107248730	107248930	+	918.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	39385.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	7.27	2.01	3.42	11.26	6.14	10.66	13.29	10.71	2.75	0.5	3.01	0.63
Merged-chr3-9001456-3	chr3	9001354	9001554	+	918.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2750.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.48	5.79	17.11	8.45	25.77	14.11	15.61	15.08	16.92	25.11	43.72	16.6
Merged-chr1-36754483-1	chr1	36754383	36754583	+	918.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040290, intron 8 of 8)	LTR33B|LTR|ERVL	-7315.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	3.23	4.78	7.99	11.26	9.82	5.64	9.97	8.8	4.92	2.01	11.05	4.39
Merged-chr4-129066022-3	chr4	129065927	129066127	+	918.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	7756.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	19.79	13.83	1.14	3.62	16.77	21.64	14.62	8.75	13.37	9.54	12.56	9.08
Merged-chr11-30198121-6	chr11	30198081	30198281	+	918.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009260)	promoter-TSS (NM_009260)	76.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	9.69	4.78	9.13	14.88	17.18	6.59	12.95	7.71	13.18	10.04	4.02	15.35
Merged-chr14-54653666-3	chr14	54653565	54653765	+	918.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085472)	promoter-TSS (NM_001085472)	20.0	NM_001242605	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	8.48	14.84	7.42	10.46	13.09	13.17	14.62	18.73	18.69	14.06	16.08	17.86
Merged-chr17-34308320-3	chr17	34308248	34308448	+	918.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	2481.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.42	15.59	21.68	12.07	15.55	21.01	11.29	11.33	23.8	10.04	14.57	12.84
Merged-chr4-53127747-3	chr4	53127638	53127838	+	918.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 4 of 49)	intron (NM_013454, intron 4 of 49)	32157.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	20.59	16.1	17.68	12.47	18.0	11.92	13.95	17.5	17.51	12.05	22.11	7.52
Merged-chr1-171638893-3	chr1	171638779	171638979	+	918.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347184, intron 3 of 5)	intron (NM_001347184, intron 3 of 5)	3021.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	11.31	11.32	18.83	15.69	9.82	14.74	3.65	8.75	20.06	14.06	31.66	15.04
Merged-chr2-131085479-1	chr2	131085379	131085579	+	918.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011426, exon 2 of 21)	exon (NM_011426, exon 2 of 21)	1286.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.63	2.52	2.85	6.44	15.55	12.23	4.65	7.74	9.44	3.51	4.02	5.01
Merged-chrX-159738873-2	chrX	159738760	159738960	+	918.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	30259.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	10.09	5.79	6.28	4.02	12.68	15.99	7.31	13.49	24.78	24.1	12.56	6.27
Merged-chr13-100866395-4	chr13	100866178	100866378	+	918.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32851.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.25	3.52	0.0	1.61	8.59	10.03	1.99	5.5	9.24	13.05	11.05	5.01
Merged-chrX-71087632-4	chrX	71087549	71087749	+	918.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	RSINE1|SINE|B4	37393.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	10.9	13.83	13.12	17.7	9.41	15.05	21.26	12.03	10.82	12.05	21.1	11.28
Merged-chr5-117842026-1	chr5	117841926	117842126	+	918.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-24813.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	8.48	3.27	1.71	4.02	13.09	13.48	6.98	12.64	2.56	11.55	11.56	4.07
Merged-chr17-90797852-2	chr17	90797735	90797935	+	918.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346957, intron 3 of 18)	intron (NM_001346957, intron 3 of 18)	-4359.0	NR_136930	102634634.0		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	9.69	13.58	13.69	24.13	29.46	33.24	21.92	40.65	6.1	9.54	10.55	5.64
Merged-chr5-146808697-3	chr5	146808463	146808663	+	918.238098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13607.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.04	6.54	11.98	14.08	7.36	5.64	11.63	13.96	3.34	3.51	5.53	2.82
Merged-chr5-107688005-3	chr5	107687916	107688116	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15464.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	15.34	13.33	11.98	4.02	16.36	15.99	8.3	10.88	23.8	7.03	18.59	6.89
Merged-chr18-35740513-3	chr18	35740419	35740619	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289592)	promoter-TSS (NM_001289592)	35.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	24.63	8.8	18.83	12.87	18.41	12.54	3.32	14.89	16.72	23.1	16.08	12.84
Merged-chr2-48975192-3	chr2	48975087	48975287	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-24953.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	11.71	9.56	17.11	10.46	17.59	22.89	20.26	29.89	13.77	18.08	16.58	9.4
Merged-chr10-67548191-3	chr10	67548131	67548331	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001005419, exon 1 of 1)	exon (NM_001005419, exon 1 of 1)	724.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	2.42	7.8	6.85	6.84	12.27	9.41	10.96	5.89	14.55	10.54	5.02	12.53
Merged-chr16-70394540-3	chr16	70394435	70394635	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	80586.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	12.11	2.01	15.4	9.65	14.73	11.92	18.27	28.46	68.25	36.15	110.55	52.0
Merged-chr14-70205107-3	chr14	70204990	70205190	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271408)	promoter-TSS (NM_001271408)	-467.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	13.33	22.39	11.98	21.32	34.36	20.38	22.92	29.69	10.82	12.55	27.13	15.66
Merged-chr17-53568349-3	chr17	53568209	53568409	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	1338.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	10.09	16.1	14.83	15.69	8.59	10.66	8.3	20.47	11.6	7.03	18.59	6.27
Merged-chr1-34564554-3	chr1	34564469	34564669	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3626.0	NM_009356	21756.0	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	12.11	13.83	18.83	19.71	11.45	10.98	15.94	22.04	15.54	4.52	17.59	6.89
Merged-chr1-153910602-3	chr1	153910510	153910710	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008131)	TTS (NM_008131)	10681.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	13.33	12.83	15.4	14.48	30.27	13.48	18.6	18.06	14.16	13.05	21.1	8.46
Merged-chr1-79671397-3	chr1	79671321	79671521	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	551.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	23.42	11.57	15.4	16.49	14.32	8.15	7.97	16.15	13.37	5.02	13.06	5.01
Merged-chr6-70864474-2	chr6	70864374	70864574	+	918.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	19959.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.46	6.54	9.13	4.02	15.14	16.93	19.27	28.21	21.64	11.55	20.6	20.68
Merged-chr2-165917396-3	chr2	165917267	165917467	+	918.1277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-32529.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	9.69	7.8	7.99	13.27	18.82	19.13	7.97	15.14	22.42	22.59	14.57	14.72
Merged-chr12-102721436-3	chr12	102721416	102721616	+	918.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-16647.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	15.34	10.56	5.13	17.29	16.36	14.74	10.96	4.46	10.82	13.56	10.55	8.46
Merged-chr7-125600756-3	chr7	125600646	125600846	+	918.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2683.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	16.96	15.34	31.38	28.15	6.95	8.78	16.28	21.7	20.46	17.07	23.62	14.41
Merged-chr15-57890571-3	chr15	57890498	57890698	+	918.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	L2a|LINE|L2	1820.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	8.48	10.56	12.55	15.69	19.64	14.11	18.27	25.21	30.88	24.1	26.13	15.66
Merged-chr2-70825092-4	chr2	70825020	70825220	+	918.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172664, intron 1 of 19)	CpG	360.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	15.34	16.85	13.12	16.09	20.86	15.68	28.23	13.49	25.57	14.06	29.65	22.56
Merged-chr1-12992431-4	chr1	12992388	12992588	+	918.0625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1353.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	7.27	19.37	15.4	6.84	10.23	8.15	11.96	10.37	21.64	25.11	6.03	15.66
Merged-chr18-31918730-3	chr18	31918589	31918789	+	918.0575560000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6786.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	4.44	8.3	1.14	5.23	3.68	4.08	11.96	4.77	6.69	13.05	10.05	5.64
Merged-chr7-28568444-3	chr7	28568325	28568525	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027470, intron 2 of 9)	intron (NM_027470, intron 2 of 9)	-7441.0	NR_106016	102466795.0		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	14.54	10.31	3.42	9.65	11.45	13.17	4.65	7.35	13.57	19.58	9.55	10.02
Merged-chr12-112673118-3	chr12	112673002	112673202	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	1174.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	10.5	10.82	10.27	4.83	14.73	13.8	13.29	22.77	15.34	7.53	17.59	13.47
Merged-chr11-21239435-3	chr11	21239346	21239546	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 1 of 22)	CpG	414.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	11.31	16.1	10.27	26.14	9.41	13.8	13.29	10.35	17.7	30.13	22.11	11.28
Merged-chr6-113857676-3	chr6	113857612	113857812	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	33827.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	9.29	9.06	12.55	22.93	9.41	18.5	10.3	18.87	12.0	11.05	15.58	13.47
Merged-chr14-31496290-2	chr14	31496196	31496396	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028932, intron 1 of 5)	intron (NM_028932, intron 1 of 5)	1217.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	7.27	6.04	5.13	2.01	14.32	15.68	15.61	12.76	10.62	20.08	18.09	10.96
Merged-chr18-55517053-1	chr18	55516953	55517153	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-524462.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.63	4.02	7.99	9.25	9.41	3.76	10.96	13.01	9.05	5.52	4.52	4.07
Merged-chr2-18952238-2	chr2	18952142	18952342	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	45879.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	13.33	4.28	8.56	22.93	12.68	8.78	7.97	11.13	6.69	5.02	12.06	1.25
Merged-chr6-116440215-1	chr6	116440115	116440315	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	20963.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.04	2.01	5.13	2.41	13.91	13.17	9.97	12.22	4.33	2.01	8.04	2.51
Merged-chr1-176833414-1	chr1	176833314	176833514	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357390, intron 5 of 18)	MIRb|SINE|MIR	2719.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	6.86	5.28	6.85	1.61	3.27	10.03	5.65	11.07	6.49	8.03	6.53	8.14
Merged-chr14-117635842-1	chr14	117635742	117635942	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	B4|SINE|B4	318005.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	1.62	2.01	0.57	4.83	3.68	3.14	7.31	7.15	1.38	2.51	3.52	3.45
Merged-chr10-99461313-1	chr10	99461213	99461413	+	918.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147858.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	8.48	6.04	1.71	12.47	5.73	8.15	3.32	16.09	8.65	11.05	14.07	10.02
Merged-chr5-62846463-3	chr5	62846363	62846563	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	32640.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	14.94	12.32	23.39	22.12	17.18	17.87	15.94	36.95	13.96	13.56	13.57	7.83
Merged-chr8-81767553-1	chr8	81767453	81767653	+	918.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424991.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	8.48	8.05	6.85	7.64	10.64	8.78	7.31	6.5	15.34	13.05	24.62	8.46
Merged-chr9-62857392-1	chr9	62857292	62857492	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001102468)	promoter-TSS (NM_001102468)	-712.0	NM_001102468	75600.0	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	4.44	3.27	8.56	2.41	4.09	10.03	7.64	10.29	6.69	8.54	17.59	5.64
Merged-chr8-84415765-1	chr8	84415665	84415865	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007578, exon 1 of 47)	exon (NM_007578, exon 1 of 47)	401.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	10.09	8.3	3.99	8.45	9.82	11.29	22.92	7.51	0.0	0.0	1.0	3.45
Merged-chr2-73463868-5	chr2	73463772	73463972	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9983.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	12.92	5.53	19.4	14.48	8.59	6.9	23.92	16.71	21.83	13.56	25.63	13.47
Merged-chr4-137609432-1	chr4	137609332	137609532	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	15260.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	4.04	3.52	10.84	2.01	4.5	4.7	7.64	7.15	4.52	5.52	6.53	5.33
Merged-chr2-83711113-1	chr2	83711013	83711213	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13284.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	6.06	1.51	2.85	3.22	6.55	2.51	8.64	11.75	0.0	0.0	0.0	1.25
Merged-chr13-36740140-2	chr13	36740048	36740248	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-5671.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	15.34	6.54	19.4	4.42	8.18	13.8	3.99	14.3	2.75	3.51	4.52	2.51
Merged-chr17-15706166-3	chr17	15706067	15706267	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	1200.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	22.61	21.38	5.7	6.84	12.27	25.71	8.64	8.5	30.29	20.08	20.1	9.4
Merged-chr16-32060040-3	chr16	32059941	32060141	+	917.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	19301.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	30.69	15.09	29.09	32.98	20.46	9.72	7.31	17.66	20.06	10.54	18.59	11.59
Merged-chr6-65590317-3	chr6	65590212	65590412	+	917.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001495)	promoter-TSS (NM_001001495)	-86.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	24.23	20.88	10.27	11.26	11.45	32.3	14.95	11.69	26.55	21.09	16.08	9.71
Merged-chr3-28746318-3	chr3	28746214	28746414	+	917.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34963.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	13.73	8.05	19.4	4.42	15.14	21.64	8.97	19.21	17.7	16.07	26.63	7.52
Merged-chr11-19926742-3	chr11	19926661	19926861	+	917.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2319.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	16.15	14.09	18.25	9.65	21.68	12.86	13.95	11.92	12.78	16.57	18.59	9.4
Merged-chr15-96568499-3	chr15	96568378	96568578	+	917.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR37-int|LTR|ERV1	73484.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	23.02	8.3	26.24	7.64	18.82	13.17	15.28	21.2	13.77	13.56	12.06	11.28
Merged-chr5-139456833-3	chr5	139456701	139456901	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 1 of 4)	PB1D7|SINE|Alu	3733.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	12.92	8.8	9.7	13.67	16.77	14.42	12.95	22.18	21.83	7.53	29.14	12.53
Merged-chr2-57191039-3	chr2	57190943	57191143	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	9212.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	16.15	25.15	36.51	42.63	9.82	11.6	10.96	28.21	20.65	10.54	30.65	23.49
Merged-chr8-120618260-3	chr8	120618127	120618327	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	16155.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	8.48	16.1	20.54	4.42	10.23	18.81	8.97	14.05	20.26	12.55	24.12	17.23
Merged-chr4-62265623-3	chr4	62265519	62265719	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20810.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	10.5	13.08	5.7	17.7	11.05	29.79	16.28	18.31	26.75	29.62	34.17	18.17
Merged-chr11-43569857-3	chr11	43569763	43569963	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	31699.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	14.13	5.79	19.4	22.93	24.96	29.16	17.94	25.54	6.49	2.01	25.12	9.4
Merged-chr14-121416910-3	chr14	121416815	121417015	+	917.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37685.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	10.09	10.82	22.82	16.09	10.23	15.37	19.27	9.06	18.1	17.07	21.61	21.93
Merged-chr3-105018992-3	chr3	105018900	105019100	+	917.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33953.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	9.69	19.87	32.52	18.5	27.82	22.58	30.23	33.62	15.14	21.59	7.54	16.29
Merged-chrX-163761362-3	chrX	163761260	163761460	+	917.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028842)	promoter-TSS (NM_028842)	-28.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	7.67	10.82	13.12	15.28	12.27	14.74	6.98	17.47	13.18	14.56	28.14	15.35
Merged-chr7-142363262-2	chr7	142363171	142363371	+	917.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	8988.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	11.31	21.88	12.55	2.41	4.91	0.0	0.66	0.67	26.16	37.66	37.18	18.8
Merged-chr19-53453362-2	chr19	53453258	53453458	+	917.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	11438.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	23.82	28.67	29.66	11.26	36.0	35.43	18.6	26.86	8.46	9.54	4.02	1.25
Merged-chr13-67269747-1	chr13	67269647	67269847	+	917.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-679.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	0.4	0.5	0.0	1.61	0.82	0.31	0.66	0.42	21.44	24.1	14.07	19.11
Merged-chr19-6974477-3	chr19	6974372	6974572	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-576.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	7.27	12.83	9.13	15.69	7.36	17.25	19.27	12.67	11.41	18.08	5.02	12.53
Merged-chr11-53707276-3	chr11	53707119	53707319	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009012)	promoter-TSS (NM_009012)	100.0	NM_009012	19360.0	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	25.04	21.63	10.27	8.45	26.18	13.17	9.97	14.69	14.75	21.59	16.58	19.11
Merged-chr11-114853268-3	chr11	114853177	114853377	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	1247.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	13.33	4.78	17.11	8.45	21.27	16.62	13.29	14.47	18.69	11.55	17.08	13.78
Merged-chr1-131703673-2	chr1	131703569	131703769	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	14974.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	16.15	8.05	14.26	13.27	2.45	0.63	0.0	0.25	17.7	26.11	13.06	13.78
Merged-chr6-135169392-2	chr6	135169267	135169467	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1152.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	20.59	14.34	9.13	11.26	2.45	5.33	6.64	6.59	2.16	1.51	4.52	2.51
Merged-chr9-107247698-2	chr9	107247592	107247792	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15783.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	10.09	17.61	29.09	20.91	12.27	20.7	17.27	20.44	1.57	0.0	3.01	2.51
Merged-chr8-108612153-3	chr8	108612048	108612248	+	917.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27471.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	23.82	15.09	9.13	21.72	24.55	26.65	7.31	26.55	18.69	12.55	24.12	10.96
Merged-chr10-44665861-3	chr10	44665745	44665945	+	917.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207097.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	10.09	12.83	19.4	7.64	13.5	36.69	20.26	17.33	23.41	16.07	14.07	14.72
Merged-chr12-85379447-3	chr12	85379343	85379543	+	917.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-4726.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	25.84	9.31	17.11	30.57	36.0	13.17	14.95	31.57	17.11	14.06	33.16	9.08
Merged-chr13-9249872-3	chr13	9249766	9249966	+	917.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26659.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	15.75	10.31	20.54	24.13	13.09	18.5	28.23	24.81	11.6	15.57	15.07	10.96
Merged-chr6-143293854-2	chr6	143293759	143293959	+	917.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027803, intron 3 of 3)	intron (NR_027803, intron 3 of 3)	47971.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	5.65	4.02	4.56	9.25	3.27	6.27	6.98	8.72	7.08	7.53	20.1	12.84
Merged-chr1-88611479-1	chr1	88611379	88611579	+	917.75	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	59962.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	10.09	11.57	19.97	22.52	0.82	0.31	0.0	1.23	0.2	0.0	0.5	0.94
Merged-chr2-128716165-3	chr2	128716067	128716267	+	917.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	17252.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	11.71	12.07	14.26	10.05	17.59	16.62	18.27	10.93	14.36	14.06	11.05	3.76
Merged-chr6-115717832-3	chr6	115717691	115717891	+	917.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41156.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	20.19	15.85	7.99	14.48	24.96	19.76	7.97	18.22	24.0	16.07	11.05	14.1
Merged-chr12-100831206-3	chr12	100831094	100831294	+	917.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361023, intron 2 of 11)	intron (NM_001361023, intron 2 of 11)	52137.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	19.79	13.58	15.97	18.5	12.27	10.66	10.63	15.45	8.65	16.57	26.63	16.29
Merged-chr2-76367415-3	chr2	76367315	76367515	+	917.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2569.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	31.09	32.45	10.84	14.08	25.77	38.88	11.96	25.12	32.06	28.62	17.59	18.17
Merged-chr3-55549637-1	chr3	55549537	55549737	+	917.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87909.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	6.06	0.5	1.71	4.83	11.86	11.92	13.95	26.44	4.72	8.03	8.04	6.58
Merged-chr10-58408161-3	chr10	58408084	58408284	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359116, intron 3 of 9)	intron (NM_001359116, intron 3 of 9)	13811.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	3.63	7.29	21.68	15.28	4.09	15.37	15.61	15.03	13.37	17.57	13.06	7.21
Merged-chr9-108002027-3	chr9	108001924	108002124	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-624.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	9.69	10.06	6.85	12.47	8.18	13.48	7.64	19.37	18.49	25.61	30.65	14.1
Merged-chr15-80219421-3	chr15	80219312	80219512	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14668.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	13.73	27.17	6.28	9.65	38.86	59.58	17.94	28.96	60.38	63.77	64.32	23.81
Merged-chr4-119178489-3	chr4	119178353	119178553	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013848, exon 13 of 13)	exon (NM_013848, exon 13 of 13)	-4258.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	35.13	32.95	54.76	18.5	1.64	5.02	5.98	3.81	107.2	61.26	111.55	45.74
Merged-chr13-64306297-2	chr13	64306186	64306386	+	917.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025370, intron 4 of 5)	intron (NM_025370, intron 4 of 5)	6424.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	5.65	7.04	4.56	6.44	18.0	6.9	18.27	13.57	13.96	23.1	18.09	5.64
Merged-chr9-78395829-3	chr9	78395755	78395955	+	917.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001191044)	promoter-TSS (NM_001191044)	78.0	NM_001191044	100048658.0	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	8.48	19.12	15.97	7.64	22.5	30.42	25.58	25.99	24.0	21.09	32.66	12.22
Merged-chr5-52674922-3	chr5	52674812	52675012	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-5211.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	27.46	11.07	18.25	18.1	19.64	16.62	9.3	21.11	35.21	12.05	26.63	7.21
Merged-chr2-12934126-3	chr2	12934039	12934239	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	10098.0	NM_001305437	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	18.17	12.58	24.53	26.55	11.45	15.68	10.3	19.99	28.91	14.06	37.18	23.18
Merged-chr16-91726475-3	chr16	91726434	91726634	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	2268.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	8.88	8.8	8.56	6.44	8.59	6.59	13.95	7.09	11.41	9.04	17.59	12.84
Merged-chr1-80630477-3	chr1	80630360	80630560	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	34892.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.65	9.56	12.55	5.23	14.32	18.5	12.29	14.16	14.16	13.56	8.04	9.08
Merged-chr10-18423716-3	chr10	18423628	18423828	+	917.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	16053.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	12.52	15.09	17.68	21.72	20.46	19.13	15.94	21.06	9.83	20.08	32.66	8.77
Merged-chr3-8594856-3	chr3	8594755	8594955	+	917.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33196.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	21.0	20.37	19.97	13.67	25.36	16.62	10.63	19.35	23.01	16.07	26.13	9.71
Merged-chr14-30152293-3	chr14	30152174	30152374	+	917.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 8 of 46)	intron (NM_001083616, intron 8 of 46)	129641.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	12.52	17.86	10.27	4.42	22.5	34.49	15.28	14.94	23.21	29.62	18.09	13.47
Merged-chr2-102917640-3	chr2	102917545	102917745	+	917.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15980.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.08	15.34	13.12	16.09	17.59	12.54	18.6	29.55	20.46	18.08	19.6	16.29
Merged-chr8-36159132-4	chr8	36159095	36159295	+	917.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	3185.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	5.25	9.56	8.56	8.85	6.55	11.6	9.3	8.16	6.29	11.05	4.02	7.83
Merged-chr19-40999079-3	chr19	40998966	40999166	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4531.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	26.25	7.8	18.25	11.66	31.91	10.03	13.62	24.59	12.0	10.54	13.06	8.14
Merged-chr11-94704106-3	chr11	94704005	94704205	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001007584, exon 1 of 2)	exon (NM_001007584, exon 1 of 2)	394.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	12.52	10.56	20.54	8.45	20.46	11.92	11.63	10.57	19.67	14.06	20.6	19.11
Merged-chr16-75869487-3	chr16	75869391	75869591	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 7 of 7)	intron (NM_023380, intron 7 of 7)	39775.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	8.88	12.32	6.28	11.66	25.36	26.03	11.96	18.59	34.42	20.08	39.19	6.89
Merged-chr9-50552395-3	chr9	50552296	50552496	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	1266.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	16.96	16.85	12.55	15.28	19.23	21.95	9.3	13.12	19.67	15.06	23.11	10.96
Merged-chr15-25835089-3	chr15	25834989	25835189	+	917.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8209.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	7.67	12.32	11.98	28.15	46.23	37.0	36.87	43.57	38.94	20.08	35.68	35.09
Merged-chr2-163645761-5	chr2	163645672	163645872	+	917.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	-629.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	7.67	15.09	10.84	8.45	13.09	11.6	9.63	10.79	14.55	15.57	11.05	19.74
Merged-chr10-25434563-3	chr10	25434462	25434662	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	26194.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	15.75	12.32	20.54	15.28	19.64	17.87	13.29	12.95	13.96	13.05	8.54	5.33
Merged-chr11-20740618-2	chr11	20740506	20740706	+	917.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	950.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.85	4.02	6.28	6.84	6.55	11.29	8.3	7.46	14.55	8.03	25.12	13.47
Merged-chr13-86018714-1	chr13	86018614	86018814	+	917.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28081.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	2.42	1.26	2.85	2.41	16.77	15.99	7.97	17.78	2.16	0.5	1.0	2.19
Merged-chr4-101069066-3	chr4	101069009	101069209	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183024)	promoter-TSS (NM_183024)	71.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	2.42	13.08	10.27	11.26	9.82	15.37	10.96	11.19	11.01	9.54	10.05	10.96
Merged-chr8-4521679-3	chr8	4521601	4521801	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026058, intron 9 of 10)	intron (NM_026058, intron 9 of 10)	28296.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	9.29	7.8	19.4	20.51	18.0	14.74	8.3	21.84	12.19	16.57	24.12	16.6
Merged-chr2-167747644-3	chr2	167747544	167747744	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56467.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	14.13	16.85	17.11	11.26	21.68	38.88	21.92	17.83	35.21	36.15	43.21	14.1
Merged-chr3-16021312-1	chr3	16021212	16021412	+	917.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	-14980.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	1.62	1.51	8.56	14.88	3.68	7.53	7.64	9.9	5.51	5.02	10.05	2.82
Merged-chr2-80081495-5	chr2	80081360	80081560	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	MER31A|LTR|ERV1	-42558.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.65	7.55	3.99	14.88	23.32	13.8	16.28	14.72	14.75	22.09	21.1	8.46
Merged-chr10-81450314-3	chr10	81450228	81450428	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22803.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	11.71	14.09	14.83	3.62	18.0	15.37	4.98	6.5	24.78	21.59	8.54	16.92
Merged-chr6-31285406-3	chr6	31285289	31285489	+	917.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	L2c|LINE|L2	65038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	15.75	14.84	4.56	4.83	14.73	13.17	10.63	9.62	14.75	7.03	20.1	8.46
Merged-chr7-44866470-3	chr7	44866352	44866552	+	917.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133949, intron 5 of 11)	intron (NM_133949, intron 5 of 11)	3336.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	16.56	14.34	26.24	20.91	22.91	21.95	7.64	15.0	9.83	14.56	11.05	18.8
Merged-chr1-36612742-3	chr1	36612697	36612897	+	917.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19465.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	23.82	32.2	25.67	37.0	5.32	10.98	4.65	6.5	11.41	21.09	11.56	6.89
Merged-chr3-95135157-3	chr3	95135074	95135274	+	917.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1086.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	11.71	13.08	7.99	12.47	22.5	13.8	13.62	12.0	31.67	19.58	26.13	29.76
Merged-chr6-50455921-3	chr6	50455862	50456062	+	917.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347213, exon 1 of 24)	5' UTR (NM_001347213, exon 1 of 24)	208.0	NM_001163645	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	12.11	17.61	7.99	13.27	9.41	8.78	13.29	12.14	6.88	4.52	9.55	13.78
Merged-chr4-124695983-2	chr4	124695886	124696086	+	917.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2432.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	6.86	1.76	2.28	0.0	22.09	14.42	10.63	11.97	12.19	7.03	15.58	10.65
Merged-chr14-52451310-2	chr14	52451207	52451407	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_020514)	TTS (NM_020514)	914.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	15.34	20.12	10.27	28.96	39.27	15.68	38.53	39.39	0.98	1.51	2.01	0.94
Merged-chr11-3139153-2	chr11	3139052	3139252	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15131.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	14.94	14.59	19.97	8.04	22.09	22.26	19.27	12.95	0.2	3.01	1.0	1.88
Merged-chr11-3154995-2	chr11	3154833	3155033	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 13 of 32)	ID4|SINE|ID	30912.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	9.69	18.11	17.68	10.86	7.77	6.27	13.95	13.15	0.0	1.0	0.0	0.31
Merged-chr2-73039481-3	chr2	73039381	73039581	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59035.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.46	5.03	20.54	3.62	14.73	20.7	38.53	23.78	38.75	14.06	31.15	19.74
Merged-chr19-34747039-3	chr19	34746914	34747114	+	917.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172838)	promoter-TSS (NM_172838)	97.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	13.33	10.06	11.98	12.07	13.91	5.02	13.62	18.34	2.95	6.53	15.58	4.39
Merged-chr7-126721826-3	chr7	126721660	126721860	+	917.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-16944.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	8.48	10.31	7.99	11.26	8.18	8.78	14.28	11.36	10.82	9.54	16.58	10.34
Merged-chr16-30465030-2	chr16	30464944	30465144	+	917.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-76514.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	8.48	2.77	6.85	8.04	12.68	12.54	12.95	6.03	30.68	19.58	27.64	19.11
Merged-chr11-116681190-3	chr11	116681093	116681293	+	917.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009180, intron 6 of 8)	intron (NM_009180, intron 6 of 8)	6596.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	21.8	6.79	12.55	11.26	8.59	11.29	8.64	20.64	20.65	15.06	11.56	11.59
Merged-chr11-29147645-2	chr11	29147551	29147751	+	917.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027869, intron 17 of 27)	intron (NM_027869, intron 17 of 27)	16900.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	14.73	7.84	2.99	12.03	27.54	25.61	25.63	18.8
Merged-chr12-100083860-2	chr12	100083703	100083903	+	917.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28528.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.83	2.26	13.12	10.05	5.73	5.96	0.33	10.07	5.31	4.02	4.52	6.58
Merged-chr4-136888465-1	chr4	136888365	136888565	+	917.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	1.62	1.76	1.71	0.8	2.45	2.2	3.99	1.01	20.65	18.08	18.59	18.8
Merged-chr4-8793446-3	chr4	8793342	8793542	+	917.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 2 of 36)	L1MA4|LINE|L1	42118.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	10.09	4.28	19.4	12.47	15.96	15.68	14.95	31.01	18.29	23.1	60.3	23.18
Merged-chr3-94814847-1	chr3	94814747	94814947	+	917.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22720.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	2.83	3.52	0.57	5.23	11.86	7.84	7.97	12.2	2.16	3.01	3.01	3.13
Merged-chr6-100214766-3	chr6	100214666	100214866	+	917.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	72592.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	12.11	22.39	11.98	16.09	22.5	17.87	23.92	31.21	25.57	28.12	28.14	26.0
Merged-chr12-25054728-1	chr12	25054628	25054828	+	917.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 31 of 31)	intron (NM_001081378, intron 31 of 31)	41364.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.0	1.26	0.57	0.8	0.0	0.0	1.33	0.84	34.03	15.57	37.69	9.08
Merged-chr17-35425276-1	chr17	35425176	35425376	+	917.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023124, exon 2 of 5)	exon (NM_023124, exon 2 of 5)	399.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	12.11	9.31	7.99	4.42	13.5	14.42	7.64	9.39	18.1	12.05	9.04	7.83
Merged-chr2-70704565-3	chr2	70704455	70704655	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43046.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	12.92	8.8	6.28	11.26	16.36	11.6	9.97	9.79	19.47	15.06	27.13	20.05
Merged-chr9-59725734-3	chr9	59725635	59725835	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17971.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	7.67	15.59	17.68	19.71	20.46	10.66	10.96	17.94	19.67	9.04	11.56	17.86
Merged-chr11-110997441-3	chr11	110997364	110997564	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252209)	promoter-TSS (NM_001252209)	-23.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	28.27	9.56	15.4	32.58	25.36	29.16	27.57	39.25	10.62	10.04	16.08	8.77
Merged-chr17-56674251-3	chr17	56674141	56674341	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252467, intron 1 of 13)	URR1B|DNA|hAT-Charlie	1016.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	16.15	11.07	9.13	14.08	9.0	10.35	9.97	10.57	12.59	17.57	22.61	20.68
Merged-chr3-41245095-3	chr3	41244980	41245180	+	917.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162034.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	33.11	20.37	35.94	49.87	64.23	57.07	70.42	84.67	10.82	11.05	27.13	17.23
Merged-chr6-137302755-3	chr6	137302657	137302857	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 1 of 26)	intron (NM_011216, intron 1 of 26)	50458.0	NM_001164401	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	9.29	9.81	16.54	14.88	4.91	11.6	9.3	14.47	23.6	9.54	32.66	23.49
Merged-chr17-34117319-4	chr17	34117284	34117484	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 2 of 12)	B1_Mus1|SINE|Alu	2516.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	6.46	13.83	10.84	17.29	8.59	23.2	11.63	8.41	29.11	24.1	32.66	25.06
Merged-chr18-12131491-3	chr18	12131393	12131593	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	2643.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	18.57	18.36	21.68	9.65	16.36	35.75	5.98	15.81	31.86	40.67	26.63	21.3
Merged-chr18-44608184-2	chr18	44608081	44608281	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53484.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	18.57	7.8	32.52	22.93	19.23	28.22	26.91	36.36	2.36	6.03	9.55	0.0
Merged-chr10-41476417-3	chr10	41476317	41476517	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164433, exon 1 of 23)	5' UTR (NM_001164433, exon 1 of 23)	103.0	NM_138315	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	25.84	14.59	8.56	11.26	19.64	17.25	19.27	17.8	13.77	9.04	17.59	14.41
Merged-chr14-25759852-3	chr14	25759733	25759933	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	9023.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	12.92	11.82	16.54	21.72	21.68	12.86	30.23	34.93	19.47	21.59	14.07	16.6
Merged-chr10-82812029-3	chr10	82811916	82812116	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038042)	promoter-TSS (NR_038042)	-107.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	8.88	10.31	10.84	13.27	19.64	16.93	11.29	21.2	33.63	36.65	39.19	14.41
Merged-chr17-23548838-3	chr17	23548722	23548922	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Arg-AGG|tRNA|tRNA	-1977.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	13.33	16.35	7.99	22.52	14.32	17.25	13.29	17.83	17.7	8.03	14.57	18.48
Merged-chr13-107168854-3	chr13	107168755	107168955	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146285.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	12.92	9.56	16.54	18.5	16.36	13.17	10.96	21.22	15.74	15.06	23.11	8.77
Merged-chr17-47767299-3	chr17	47767205	47767405	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18439.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	5.25	8.8	15.4	12.07	49.5	22.58	20.93	35.94	32.26	28.12	23.62	34.77
Merged-chr1-84946198-3	chr1	84946090	84946290	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11107.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	13.33	5.53	9.13	14.88	26.18	16.62	13.95	24.17	19.87	17.57	20.6	22.24
Merged-chr7-101311318-3	chr7	101311272	101311472	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-5714.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	12.92	6.04	15.97	3.22	17.59	10.98	4.65	10.88	16.52	3.01	10.05	8.46
Merged-chr13-89339994-3	chr13	89339890	89340090	+	917.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200646.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	11.71	7.29	26.81	40.22	11.05	7.84	14.28	17.33	44.06	23.1	76.38	45.11
Merged-chr12-84615298-3	chr12	84615190	84615390	+	917.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008992, intron 2 of 18)	intron (NM_008992, intron 2 of 18)	2176.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	8.08	8.05	10.84	5.23	27.82	73.38	30.23	35.19	33.24	14.56	23.11	14.41
Merged-chr7-122459766-3	chr7	122459666	122459866	+	917.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170641.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	11.71	10.06	4.56	5.63	10.23	18.19	4.65	11.47	29.7	16.57	22.11	8.46
Merged-chr6-32588487-2	chr6	32588390	32588590	+	917.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	-298.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	10.09	10.82	22.82	14.88	11.05	19.44	3.99	12.59	9.83	9.54	5.02	6.58
Merged-chr11-62810568-3	chr11	62810464	62810664	+	917.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9689.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	9.69	14.09	26.24	16.49	13.91	11.6	6.98	14.69	19.28	7.53	9.04	12.22
Merged-chr8-80738473-3	chr8	80738398	80738598	+	917.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053124, intron 1 of 23)	CpG	961.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	8.48	9.81	10.27	6.44	9.0	23.2	15.28	11.05	21.83	11.05	21.61	12.22
Merged-chr12-72084402-3	chr12	72084288	72084488	+	917.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026038, intron 1 of 4)	intron (NM_026038, intron 1 of 4)	925.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	14.13	7.29	21.68	11.26	8.59	12.86	8.3	17.52	11.21	6.03	24.12	17.86
Merged-chr11-55039792-3	chr11	55039680	55039880	+	917.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6309.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	30.28	27.42	17.11	12.87	25.36	35.43	9.97	8.16	37.17	35.15	20.1	21.3
Merged-chr11-83440672-5	chr11	83440583	83440783	+	917.1066890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172797)	TTS (NM_172797)	2989.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	11.31	13.58	25.67	13.67	12.68	10.35	2.66	8.41	7.08	16.07	17.59	6.27
Merged-chr6-50291880-3	chr6	50291795	50291995	+	917.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30126.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.46	11.32	14.83	12.07	18.41	16.31	13.62	25.12	23.01	25.61	34.67	13.78
Merged-chr6-38676888-3	chr6	38676788	38676988	+	917.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101507, exon 3 of 5)	exon (NM_001101507, exon 3 of 5)	13819.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	16.96	14.59	25.1	32.98	22.5	27.91	17.94	30.9	11.6	8.54	14.07	11.59
Merged-chr9-48161982-3	chr9	48161883	48162083	+	917.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	178915.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	32.3	11.57	18.83	14.88	20.05	32.93	6.31	25.12	16.52	26.61	13.57	5.33
Merged-chr15-40023374-1	chr15	40023274	40023474	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21814.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	7.67	7.29	9.13	6.84	4.5	9.41	10.3	11.72	4.72	4.02	2.51	2.82
Merged-chr3-15960939-1	chr3	15960839	15961039	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	45393.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	2.02	4.28	14.83	9.65	12.68	4.7	8.97	18.62	2.36	0.5	4.02	1.25
Merged-chr18-65704173-3	chr18	65704074	65704274	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	5906.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.08	17.61	4.56	15.69	20.46	24.77	23.92	13.74	13.37	12.55	12.06	10.96
Merged-chr1-180983250-3	chr1	180983147	180983347	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR22_Mus|LTR|ERVK	34322.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	16.15	16.85	15.97	17.7	17.18	21.01	16.61	21.81	27.14	19.08	29.65	26.63
Merged-chr1-165653785-1	chr1	165653685	165653885	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 5 of 5)	MLT1C|LTR|ERVL-MaLR	-19244.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.81	1.01	0.0	2.82	2.45	1.25	8.3	6.03	1.97	3.01	3.52	6.27
Merged-chr18-65190765-1	chr18	65190665	65190865	+	917.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-58096.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.33	0.0	16.72	8.54	20.6	11.9
Merged-chr5-123568324-1	chr5	123568224	123568424	+	917.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359513, intron 4 of 11)	intron (NM_001359513, intron 4 of 11)	4691.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.0	0.0	0.0	0.0	0.82	0.0	0.0	0.36	11.41	2.01	6.03	9.71
Merged-chr6-54620453-1	chr6	54620353	54620553	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001335, intron 6 of 13)	intron (NM_001001335, intron 6 of 13)	17306.0	NM_001001335	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	2.42	1.26	3.42	3.22	2.45	2.51	7.31	11.1	0.0	0.0	1.0	0.0
Merged-chr4-72169298-1	chr4	72169198	72169398	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285530, intron 5 of 17)	intron (NM_001285530, intron 5 of 17)	31595.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	5.25	5.03	1.14	2.01	4.91	12.86	8.97	9.14	2.36	4.02	10.05	1.88
Merged-chr3-40522940-3	chr3	40522821	40523021	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-9.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	10.5	7.04	9.13	11.26	13.09	19.76	19.93	20.72	19.47	33.14	31.66	16.29
Merged-chrUn_JH584304-16332-1	chrUn_JH584304	16232	16432	+	917.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR21|LTR|ERVK	43357.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.64	24.1	29.14	13.16
Merged-chr4-32011332-1	chr4	32011232	32011432	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009316, intron 14 of 16)	L1MA5A|LINE|L1	47225.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	9.29	3.27	6.28	4.83	9.0	4.7	14.28	14.61	7.67	7.53	9.55	7.21
Merged-chr11-3133043-3	chr11	3132835	3133035	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003517)	TTS (NR_003517)	8914.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	23.82	19.87	9.13	30.16	40.09	42.96	39.2	50.47	6.1	4.52	2.51	4.07
Merged-chr6-40503396-1	chr6	40503296	40503496	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9804.0	NM_020502	57253.0	Mm.377132	NM_020502	ENSMUSG00000037140	Tas2r108	T2R108|T2r8|Tas2r4|Tas2r8|mGR08|mt2r8	taste receptor, type 2, member 108	protein-coding	2.02	0.5	2.28	0.8	3.27	2.82	6.31	8.05	4.33	3.01	0.0	4.39
Merged-chr4-117536018-3	chr4	117535912	117536112	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14312.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	14.13	5.79	17.11	13.67	4.5	11.92	7.64	9.5	16.72	13.56	18.59	7.83
Merged-chr2-69898229-5	chr2	69898013	69898213	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	867.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	6.46	8.05	9.13	7.64	6.55	3.76	8.64	9.59	8.65	12.05	17.08	9.4
Merged-chr18-54992620-3	chr18	54992524	54992724	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-33.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	27.46	22.39	9.7	11.26	27.82	23.83	9.63	14.19	25.96	22.09	34.17	17.86
Merged-chr10-39378188-3	chr10	39378106	39378306	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	8407.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	8.08	9.81	15.97	26.14	12.68	10.03	19.6	26.92	14.36	2.51	8.54	6.89
Merged-chr14-64941693-3	chr14	64941589	64941789	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	8168.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	21.4	14.84	27.95	31.77	18.41	11.29	10.63	17.1	23.21	12.05	12.56	8.77
Merged-chr5-88596235-3	chr5	88596128	88596328	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 2 of 13)	MTD|LTR|ERVL-MaLR	12715.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	9.69	12.83	18.83	12.47	12.27	18.81	17.94	14.36	16.52	21.09	19.6	15.04
Merged-chr11-6561077-3	chr11	6560972	6561172	+	916.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	889.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	17.77	6.54	18.25	21.32	23.73	15.68	45.84	38.33	17.31	11.55	28.64	20.99
Merged-chr11-97826689-3	chr11	97826612	97826812	+	916.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-14068.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	21.8	16.35	11.98	12.87	20.46	18.81	16.28	19.46	18.69	22.09	7.54	11.9
Merged-chr1-63567233-3	chr1	63567138	63567338	+	916.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011780, intron 21 of 25)	intron (NM_011780, intron 21 of 25)	119689.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	11.71	11.57	8.56	16.89	25.36	16.31	14.28	19.79	10.03	13.05	15.58	13.78
Merged-chr12-40040329-3	chr12	40040222	40040422	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2335.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	16.15	21.13	14.26	12.87	14.32	15.37	12.95	12.79	21.83	19.58	20.1	8.46
Merged-chr17-50490285-3	chr17	50490192	50490392	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19255.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	14.94	16.85	18.83	7.24	13.91	15.68	8.97	18.14	16.33	26.61	12.06	2.82
Merged-chr3-137853469-3	chr3	137853373	137853573	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-11014.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	19.79	11.57	15.4	13.67	18.0	18.19	4.65	14.05	29.5	3.01	14.57	17.54
Merged-chr5-67827137-3	chr5	67827044	67827244	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	L3|LINE|CR1	20287.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	14.94	10.31	23.96	14.88	11.05	13.48	6.98	15.9	29.5	24.6	17.59	15.98
Merged-chr16-10969630-3	chr16	10969521	10969721	+	916.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	23500.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	18.17	12.83	22.25	14.48	13.91	6.27	7.64	15.87	12.0	10.54	20.1	4.39
Merged-chr5-43880405-2	chr5	43880309	43880509	+	916.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	L1MC5a|LINE|L1	11600.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	13.73	11.57	13.69	14.08	18.0	23.52	8.97	12.76	11.8	21.59	30.65	11.28
Merged-chr6-129421447-3	chr6	129421324	129421524	+	916.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205363, intron 6 of 6)	MTC|LTR|ERVL-MaLR	12562.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	18.98	9.06	17.68	20.11	26.18	15.68	8.64	21.53	25.18	16.07	23.11	12.53
Merged-chr19-34725558-1	chr19	34725458	34725658	+	916.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	21553.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	7.67	3.77	10.27	21.72	22.09	10.03	17.27	20.33	6.1	7.53	19.6	4.39
Merged-chr11-50321491-3	chr11	50321391	50321591	+	916.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	4182.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	21.0	8.3	19.4	20.51	22.09	17.56	5.31	13.79	16.72	19.08	23.11	15.66
Merged-chr8-11005889-1	chr8	11005789	11005989	+	916.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1961.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	7.27	2.77	3.42	11.26	9.41	10.03	8.3	9.17	4.13	5.02	2.01	1.25
Merged-chr8-91051238-3	chr8	91051140	91051340	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18817.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	10.09	13.58	7.99	14.08	11.05	21.01	11.96	19.04	21.83	10.04	25.63	16.29
Merged-chr1-171270327-3	chr1	171270224	171270424	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020579)	promoter-TSS (NM_020579)	-4.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	15.34	15.09	14.83	9.65	36.0	20.38	6.31	21.08	28.91	19.58	19.6	11.59
Merged-chr12-33316630-3	chr12	33316520	33316720	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	14105.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	10.9	8.3	23.96	12.07	13.5	19.76	13.62	17.38	26.36	10.04	32.66	14.72
Merged-chr16-49783551-3	chr16	49783478	49783678	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72076.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.67	4.53	13.69	20.91	19.64	21.95	12.62	28.96	22.42	20.59	18.09	11.59
Merged-chr2-84820091-2	chr2	84819997	84820197	+	916.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024230, intron 1 of 7)	intron (NM_024230, intron 1 of 7)	2555.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	5.65	12.58	10.27	17.7	9.82	14.11	15.94	9.14	0.39	2.01	1.0	2.82
Merged-chr10-19047583-3	chr10	19047494	19047694	+	916.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32184.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	20.59	12.07	19.97	5.63	16.36	29.16	16.28	15.76	27.93	27.11	12.56	8.46
Merged-chr8-119422172-2	chr8	119422064	119422264	+	916.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14998.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	5.25	4.28	15.97	19.71	10.23	10.35	9.3	11.89	5.31	4.02	3.52	10.65
Merged-chr7-58658185-3	chr7	58658077	58658277	+	916.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009728)	promoter-TSS (NM_009728)	-25.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	14.94	8.55	18.25	19.31	7.77	2.51	4.32	9.2	14.75	9.04	14.07	12.53
Merged-chr18-36320180-3	chr18	36320094	36320294	+	916.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	20093.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	17.36	16.1	26.24	13.67	30.68	22.89	12.95	23.16	26.36	19.08	16.58	10.65
Merged-chr10-117893352-3	chr10	117893246	117893446	+	916.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32113.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	11.71	12.83	3.99	12.47	11.05	13.48	5.65	11.92	19.08	17.07	27.13	16.6
Merged-chr7-89412317-1	chr7	89412217	89412417	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7951.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	6.06	2.52	6.85	6.84	14.32	8.47	14.95	21.31	0.59	2.51	1.0	2.82
Merged-chr3-109025757-3	chr3	109025656	109025856	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	1851.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	13.33	13.83	13.69	6.03	17.18	14.74	9.3	9.73	19.47	20.59	32.16	20.36
Merged-chr1-160861375-1	chr1	160861275	160861475	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45036.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	4.44	9.81	9.13	5.63	10.23	19.44	12.95	23.58	5.51	5.02	8.04	8.14
Merged-chr15-95826099-3	chr15	95825984	95826184	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3988.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	11.31	14.34	7.99	8.45	10.23	16.62	12.62	7.46	16.13	15.57	19.09	9.71
Merged-chr3-108132710-3	chr3	108132589	108132789	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	13463.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	2.83	7.8	13.69	13.27	16.77	18.5	11.29	25.01	19.08	13.56	19.6	19.42
Merged-chr10-39370200-1	chr10	39370100	39370300	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	CpG	401.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	12.92	12.58	22.25	16.89	13.91	12.54	13.95	13.99	18.1	9.54	13.57	12.84
Merged-chr18-23887500-1	chr18	23887400	23887600	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	L2c|LINE|L2	-67188.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.25	1.51	1.14	2.41	9.82	7.84	14.28	16.35	1.77	1.0	2.01	5.95
Merged-chrX-162643613-3	chrX	162643535	162643735	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290633)	promoter-TSS (NM_001290633)	23.0	NM_001359103	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	6.06	8.3	10.84	10.86	19.64	18.19	16.61	28.68	5.9	13.05	17.59	10.96
Merged-chr8-106953768-1	chr8	106953668	106953868	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	18018.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	2.83	2.52	3.99	4.83	10.23	23.2	14.95	18.03	3.34	9.54	6.03	11.9
Merged-chr11-6178839-2	chr11	6178747	6178947	+	916.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-5516.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	16.96	18.36	28.52	14.48	7.36	11.92	4.65	9.14	14.36	4.52	6.53	5.95
Merged-chr1-55838291-2	chr1	55838190	55838390	+	916.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92951.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	8.48	14.84	9.7	5.63	15.96	21.01	12.95	15.36	13.96	9.54	14.57	10.65
Merged-chr1-43303001-2	chr1	43302891	43303091	+	916.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106230.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	7.55	2.85	6.84	9.41	6.27	8.3	11.21	24.78	27.62	41.2	15.04
Merged-chr19-47621712-3	chr19	47621604	47621804	+	916.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164639, intron 9 of 17)	intron (NM_001164639, intron 9 of 17)	41685.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	10.9	14.34	31.95	14.08	13.5	17.56	10.96	14.41	19.47	2.51	9.04	8.77
Merged-chr7-45204607-3	chr7	45204514	45204714	+	916.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201374, exon 1 of 20)	exon (NM_201374, exon 1 of 20)	278.0	NM_201374	384619.0	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	16.56	18.86	26.81	12.87	16.36	14.74	7.97	13.07	18.69	26.11	21.61	5.01
Merged-chr10-42275553-3	chr10	42275378	42275578	+	916.5872800000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019740, exon 2 of 4)	5' UTR (NM_019740, exon 2 of 4)	1264.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	11.31	13.58	10.27	6.84	20.46	10.98	10.96	11.72	14.16	8.54	15.07	17.86
Merged-chr2-152363577-3	chr2	152363481	152363681	+	916.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033505, intron 2 of 4)	intron (NR_033505, intron 2 of 4)	12985.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	19.79	17.1	14.26	8.04	14.73	21.95	5.65	13.23	11.01	20.59	15.58	12.53
Merged-chr6-108480185-3	chr6	108480082	108480282	+	916.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-9561.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	84.39	51.56	87.85	73.6	70.37	88.74	80.39	79.93	24.0	11.05	13.06	19.74
Merged-chr1-64530930-3	chr1	64530848	64531048	+	916.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1856.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	19.38	9.31	16.54	5.63	11.05	10.98	6.98	5.75	15.93	20.08	20.1	8.14
Merged-chr6-31253380-3	chr6	31253289	31253489	+	916.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040257, intron 2 of 7)	(TGGGGG)n|Simple_repeat|Simple_repeat	33038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	10.5	8.55	13.69	4.42	24.14	37.63	12.29	11.21	35.99	27.11	25.63	13.78
Merged-chr1-57472401-3	chr1	57472312	57472512	+	916.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-65738.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	16.15	8.55	10.27	17.29	20.05	21.64	12.29	27.79	25.18	29.12	26.63	13.78
Merged-chr4-109120941-3	chr4	109120832	109121032	+	916.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2896.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	22.21	20.37	15.4	14.48	8.59	10.98	11.63	14.64	18.29	15.06	17.08	20.36
Merged-chr9-59294374-2	chr9	59294276	59294476	+	916.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2804.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	3.23	8.3	4.56	11.66	27.41	17.87	8.3	13.57	21.44	21.09	19.09	9.08
Merged-chr13-4770572-1	chr13	4770472	4770672	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-161408.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	7.27	3.02	2.85	0.8	9.82	17.25	12.29	11.02	7.67	12.05	4.02	0.63
Merged-chr11-43375166-3	chr11	43375071	43375271	+	916.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029558)	promoter-TSS (NR_029558)	-710.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	14.13	9.31	19.97	12.07	23.73	26.65	11.29	29.1	18.49	14.06	31.15	12.22
Merged-chr3-96767240-3	chr3	96767138	96767338	+	916.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	ORR1D1-int|LTR|ERVL-MaLR	39627.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	21.8	12.32	18.83	12.87	15.14	21.95	12.29	7.49	24.78	14.06	22.11	15.04
Merged-chr10-111161524-1	chr10	111161424	111161624	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3278.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	13.73	3.02	13.69	5.63	4.09	13.17	4.65	9.73	7.87	1.51	4.52	0.94
Merged-chr14-22845664-1	chr14	22845564	22845764	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	248907.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	2.02	1.76	6.85	3.62	7.77	17.25	9.63	20.94	5.51	2.51	9.55	10.96
Merged-chr17-33702360-2	chr17	33702251	33702451	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252480, intron 3 of 4)	B1F2|SINE|Alu	16326.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.0	4.78	3.42	12.07	14.73	18.5	18.27	10.71	27.54	11.05	16.08	13.78
Merged-chr7-134692636-3	chr7	134692542	134692742	+	916.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	ORR1D1|LTR|ERVL-MaLR	21955.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	18.98	7.55	12.55	13.27	16.77	36.69	18.93	14.24	23.41	22.09	27.13	11.59
Merged-chr1-144312752-3	chr1	144312654	144312854	+	916.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-63650.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	14.13	3.52	24.53	8.04	13.09	21.01	12.62	22.23	16.72	14.06	20.1	9.08
Merged-chr7-43546192-3	chr7	43546096	43546296	+	916.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13025.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	9.29	16.35	11.98	2.82	16.36	20.7	8.3	7.88	17.31	25.11	7.54	10.34
Merged-chr19-47539002-3	chr19	47538906	47539106	+	916.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67A|LTR|ERV1	-1887.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	13.33	12.83	25.1	14.48	16.36	21.95	9.3	14.05	23.21	18.58	14.07	7.21
Merged-chr4-63765248-3	chr4	63765124	63765324	+	916.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20111.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	9.69	14.84	31.95	22.93	11.05	18.5	15.61	24.67	15.34	14.06	11.05	18.8
Merged-chr19-60663219-2	chr19	60663107	60663307	+	916.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-82184.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.86	4.78	11.41	4.83	19.23	31.98	17.27	30.22	17.9	12.55	16.08	11.28
Merged-chr4-46087129-3	chr4	46086979	46087179	+	916.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	47857.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	8.48	5.79	13.69	18.5	23.73	12.86	17.61	15.76	24.39	15.06	32.16	21.62
Merged-chrX-160768515-3	chrX	160768414	160768614	+	916.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011302, intron 1 of 5)	intron (NM_011302, intron 1 of 5)	501.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	9.29	11.57	22.82	12.87	12.27	24.46	20.26	19.37	20.65	19.08	21.1	15.04
Merged-chrX-70385417-3	chrX	70385316	70385516	+	916.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026787)	promoter-TSS (NM_026787)	-497.0	NM_026787	68618.0	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	15.75	10.56	8.56	12.87	20.05	16.31	17.61	15.34	13.57	19.58	19.6	7.52
Merged-chr11-3141054-4	chr11	3140918	3141118	+	916.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 21 of 32)	B4A|SINE|B4	16997.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	17.36	20.37	22.25	39.82	58.09	27.59	66.1	63.48	2.56	3.01	2.51	1.57
Merged-chr11-63914519-3	chr11	63914418	63914618	+	916.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	7766.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	5.25	17.86	2.28	12.07	11.86	12.23	9.3	13.46	13.57	17.07	15.07	7.83
Merged-chr13-54206432-2	chr13	54206324	54206524	+	916.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	14291.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	13.73	10.56	18.83	20.51	6.14	24.77	6.31	13.51	12.78	3.01	10.05	3.13
Merged-chr1-138973702-2	chr1	138973593	138973793	+	916.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-3964.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	5.25	5.03	0.57	4.42	8.18	15.37	6.98	9.39	17.7	6.53	19.09	4.39
Merged-chr10-8926463-2	chr10	8926335	8926535	+	916.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-40365.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.85	4.02	10.27	6.84	8.18	6.27	4.65	7.93	18.1	16.07	21.1	9.08
Merged-chr12-111041357-3	chr12	111041239	111041439	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	1541.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	12.11	17.61	23.96	16.09	9.82	16.93	6.31	10.09	14.55	18.08	13.06	15.04
Merged-chr7-83879518-3	chr7	83879427	83879627	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030705)	TTS (NM_030705)	4814.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	11.71	9.81	25.67	12.07	11.86	16.93	22.26	25.49	28.52	32.13	30.15	16.6
Merged-chr11-23217621-3	chr11	23217504	23217704	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38437.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	11.31	7.8	21.68	12.07	35.59	24.46	27.24	35.1	28.13	30.13	23.62	17.54
Merged-chr15-86203591-1	chr15	86203491	86203691	+	916.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10868.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.06	3.27	5.13	7.64	4.91	3.76	8.3	8.24	10.82	13.56	6.03	14.1
Merged-chr1-13207057-1	chr1	13206957	13207157	+	916.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-79894.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	1.62	2.01	2.85	3.62	12.27	10.98	8.64	13.07	3.34	3.01	4.52	2.19
Merged-chr4-109126280-1	chr4	109126180	109126380	+	916.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	Charlie29a|DNA|hAT-Charlie	-8244.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	9.69	4.02	2.28	2.41	1.64	13.48	8.64	10.46	6.29	3.01	9.04	4.07
Merged-chr17-23979710-3	chr17	23979616	23979816	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4486.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	10.09	11.57	15.4	14.88	14.32	20.07	15.94	21.31	39.53	50.71	62.31	28.19
Merged-chr3-84674911-1	chr3	84674811	84675011	+	916.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177260, intron 1 of 6)	U8|snRNA|snRNA	8719.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	2.83	12.07	6.85	4.83	11.05	11.29	13.62	11.02	6.29	10.54	11.56	12.53
Merged-chr7-144932569-3	chr7	144932463	144932663	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007631, exon 5 of 5)	3' UTR (NM_007631, exon 5 of 5)	7362.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	23.82	9.06	21.11	12.07	20.46	19.13	12.29	22.29	23.21	12.55	27.64	12.84
Merged-chr2-122570687-3	chr2	122570582	122570782	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40595.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	29.07	32.45	47.35	33.78	33.14	30.42	38.53	64.01	8.85	8.03	21.1	9.08
Merged-chr8-117079905-3	chr8	117079813	117080013	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 3 of 42)	intron (NM_029686, intron 3 of 42)	2536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	8.08	14.09	22.25	12.47	27.0	29.79	19.93	24.14	29.11	24.6	33.16	14.72
Merged-chr3-69125998-3	chr3	69125875	69126075	+	916.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	1117.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	8.48	13.08	9.7	15.69	7.77	21.32	21.92	16.37	20.06	21.59	30.65	19.42
Merged-chr18-84809128-3	chr18	84809028	84809228	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42210.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.86	11.07	7.99	12.87	16.77	11.29	5.31	9.81	16.33	12.05	20.6	10.65
Merged-chr13-111942135-3	chr13	111942069	111942269	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	74233.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	8.48	10.06	6.85	10.86	31.91	50.17	27.9	22.57	27.14	15.57	26.63	15.66
Merged-chr15-89356566-3	chr15	89356469	89356669	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178919)	promoter-TSS (NM_178919)	850.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	21.0	10.82	10.84	11.26	11.45	15.05	8.97	13.77	33.24	23.1	22.11	14.1
Merged-chr7-114164492-3	chr7	114164451	114164651	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-46770.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	7.67	6.29	13.12	9.25	10.64	6.59	9.3	12.53	18.69	17.07	29.14	9.08
Merged-chr13-92651105-3	chr13	92651007	92651207	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 1 of 11)	MIRb|SINE|MIR	39969.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	18.98	14.59	20.54	8.45	11.45	31.04	27.24	28.12	14.75	16.07	39.7	12.22
Merged-chr4-155490555-3	chr4	155490462	155490662	+	916.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-799.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	12.11	13.33	22.25	10.05	23.73	26.03	12.95	16.04	22.62	25.11	24.12	10.34
Merged-chr11-87426436-3	chr11	87426370	87426570	+	916.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-1121.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	20.59	13.58	14.83	9.25	18.41	16.93	11.63	8.19	26.55	30.63	16.08	13.47
Merged-chr15-86173846-2	chr15	86173761	86173961	+	916.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	L1MDa|LINE|L1	-11867.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	14.13	11.57	22.25	30.16	7.36	1.88	8.64	12.9	4.92	2.01	3.01	4.07
Merged-chr10-51433174-3	chr10	51433088	51433288	+	916.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47424.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	10.09	13.08	22.25	18.9	14.73	4.39	11.63	18.7	17.31	5.52	13.57	11.9
Merged-chr10-117145722-3	chr10	117145667	117145867	+	916.242065	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	2707.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	11.71	12.83	7.42	8.45	13.5	10.35	8.64	8.78	16.13	12.55	16.58	12.22
Merged-chr17-47595675-3	chr17	47595567	47595767	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2200.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.65	11.82	9.7	17.29	16.36	14.11	15.28	18.14	12.78	3.01	18.59	10.02
Merged-chr5-108636393-3	chr5	108636282	108636482	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	6572.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	13.73	9.31	27.38	19.31	10.23	16.62	7.64	16.35	16.13	20.59	27.64	18.8
Merged-chr2-58157135-3	chr2	58157046	58157246	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2976.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	17.36	6.54	9.7	18.5	42.55	31.36	34.55	51.36	39.93	19.08	71.35	17.86
Merged-chr2-102979335-3	chr2	102979225	102979425	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77660.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	11.31	12.07	3.99	9.65	21.68	68.36	17.94	10.04	40.12	38.16	29.65	11.28
Merged-chr11-17185285-3	chr11	17185195	17185395	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 2 of 5)	L1_Mur3|LINE|L1	25997.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	27.46	27.92	11.41	33.78	21.27	31.36	21.92	30.93	13.77	10.54	9.55	5.33
Merged-chr7-122018471-3	chr7	122018362	122018562	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028758, intron 1 of 16)	intron (NM_028758, intron 1 of 16)	2736.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	14.54	20.12	15.97	7.64	10.23	21.01	12.95	7.6	14.55	16.57	18.09	7.83
Merged-chr3-116290296-3	chr3	116290182	116290382	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-36798.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	8.48	10.56	20.54	27.35	14.73	13.8	24.25	27.76	21.44	8.03	21.61	18.48
Merged-chr8-84235756-3	chr8	84235642	84235842	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	1300.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	9.29	9.56	14.26	5.63	16.36	18.5	5.65	10.63	24.39	10.54	18.59	8.77
Merged-chr5-76675566-3	chr5	76675453	76675653	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83839.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	15.75	9.56	13.69	12.07	9.41	27.59	16.28	11.07	25.77	16.07	29.65	10.34
Merged-chr12-108627570-2	chr12	108627473	108627673	+	916.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-8180.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.85	2.01	2.85	1.61	20.05	13.48	19.27	13.96	11.8	13.56	15.58	9.71
Merged-chr10-99168588-3	chr10	99168483	99168683	+	916.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	60448.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	11.71	17.61	11.41	16.49	12.68	19.44	8.97	11.72	19.08	24.6	36.18	10.65
Merged-chr13-117020722-3	chr13	117020615	117020815	+	916.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4801.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	12.92	15.09	9.13	4.42	44.18	53.31	23.25	18.31	67.66	49.21	40.2	23.18
Merged-chr6-115539128-3	chr6	115539030	115539230	+	916.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5574.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	20.19	24.4	9.13	13.67	17.18	20.38	8.97	12.53	18.69	20.59	17.08	10.96
Merged-chr11-94128126-2	chr11	94128033	94128233	+	916.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83321.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.86	8.3	5.7	5.23	12.27	13.8	3.99	7.4	14.95	15.06	16.08	14.1
Merged-chr5-115507342-2	chr5	115507261	115507461	+	916.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	685.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	13.33	5.28	19.97	15.28	11.86	9.09	17.94	8.83	6.49	8.03	9.04	14.72
Merged-chr4-87652421-2	chr4	87652328	87652528	+	916.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153895.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	8.88	5.28	2.28	8.04	13.91	12.23	11.63	12.0	14.95	11.05	5.53	2.19
Merged-chr5-139282398-3	chr5	139282309	139282509	+	916.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28912.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	17.36	16.85	13.69	7.64	19.23	22.58	8.3	11.75	32.65	18.58	24.12	23.18
Merged-chr12-106016444-3	chr12	106016342	106016542	+	916.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	L1MD|LINE|L1	6179.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	11.71	12.07	17.11	23.33	15.14	14.11	9.3	20.19	12.59	13.05	11.56	10.96
Merged-chr3-95174352-3	chr3	95174221	95174421	+	916.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011351)	TTS (NM_011351)	9982.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	13.33	17.61	15.97	10.86	24.14	10.66	9.97	11.02	14.16	16.57	15.07	9.71
Merged-chr6-31190769-3	chr6	31190682	31190882	+	916.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	27692.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	16.96	13.08	10.27	25.74	11.45	19.76	7.31	17.13	23.8	12.55	16.58	16.6
Merged-chr8-31123507-2	chr8	31123408	31123608	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	11662.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	8.48	4.02	6.28	7.24	6.95	7.84	9.97	17.97	20.06	19.58	52.26	12.22
Merged-chr11-3913453-1	chr11	3913353	3913553	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	1211.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	4.44	2.52	2.28	5.23	9.0	8.47	8.97	9.84	9.05	7.53	12.56	4.07
Merged-chr11-3169163-2	chr11	3169059	3169259	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	intron (NM_030207, intron 7 of 32)	24304.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	10.5	10.06	12.55	6.03	23.32	8.15	13.29	13.04	3.34	5.02	1.0	1.88
Merged-chr13-20398565-1	chr13	20398465	20398665	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-74425.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.42	4.02	10.27	7.24	12.27	13.48	11.63	8.75	6.29	3.01	9.04	3.13
Merged-chr8-46795522-2	chr8	46795429	46795629	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 2 of 7)	B1_Mur3|SINE|Alu	55784.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.65	7.55	4.56	4.83	14.73	3.76	11.63	10.21	14.75	14.06	8.54	6.27
Merged-chr9-7185028-1	chr9	7184928	7185128	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029775, intron 1 of 7)	CpG	523.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	13.33	16.1	14.83	8.85	10.23	16.31	11.96	18.62	29.11	23.1	20.6	33.21
Merged-chr1-172578274-1	chr1	172578174	172578374	+	916.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12294.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.4	1.26	2.28	0.8	1.23	1.25	0.0	0.39	16.33	12.05	5.02	4.39
Merged-chr11-20937153-1	chr11	20937053	20937253	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-106045.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.44	0.0	2.28	3.22	10.64	4.08	9.97	12.2	3.15	0.0	1.0	4.7
Merged-chr6-33791000-1	chr6	33790900	33791100	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-238448.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	1.62	1.26	1.71	2.82	4.09	3.45	7.97	9.2	1.97	4.02	12.56	5.33
Merged-chr10-122794825-2	chr10	122794730	122794930	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	115515.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	14.13	15.85	12.55	14.08	19.23	14.42	25.91	22.29	9.83	6.03	10.05	10.96
Merged-chr7-48958995-3	chr7	48958892	48959092	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111016)	promoter-TSS (NM_001111016)	-81.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.23	6.79	19.4	12.07	20.46	22.58	16.94	20.97	18.88	17.07	46.73	14.41
Merged-chr13-114887545-1	chr13	114887445	114887645	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008396, intron 2 of 29)	intron (NM_008396, intron 2 of 29)	44555.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	3.63	3.52	18.25	13.27	1.64	5.02	1.0	3.62	3.74	2.01	0.5	1.57
Merged-chr16-33687590-3	chr16	33687505	33687705	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	3139.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	18.57	18.36	23.39	24.94	9.82	13.48	9.97	18.98	14.95	10.04	15.07	10.96
Merged-chr16-76232427-1	chr16	76232327	76232527	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109814.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	3.23	0.25	5.7	3.22	0.82	1.25	8.97	8.3	1.57	2.01	1.51	2.82
Merged-chr15-80497910-3	chr15	80497804	80498004	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163189, intron 4 of 5)	ORR1A2|LTR|ERVL-MaLR	-59301.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	24.23	19.62	30.23	42.23	24.55	43.27	21.92	23.5	14.75	8.03	5.53	14.1
Merged-chr10-93961840-3	chr10	93961724	93961924	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	2039.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	17.77	9.81	22.25	29.36	15.14	12.23	15.61	32.19	22.03	20.59	28.64	16.29
Merged-chr4-139204826-3	chr4	139204703	139204903	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	10692.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	12.92	4.78	10.84	8.85	8.18	1.25	2.99	10.51	14.95	7.03	14.57	4.7
Merged-chr2-94405659-3	chr2	94405617	94405817	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	972.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	2.42	13.58	5.13	4.02	6.14	1.88	5.65	5.86	10.42	9.04	8.04	10.65
Merged-chrX-12136972-6	chrX	12136864	12137064	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045434, exon 3 of 4)	non-coding (NR_045434, exon 3 of 4)	23382.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	16.56	12.32	10.27	13.67	6.55	10.03	5.65	13.35	8.46	13.05	10.05	6.89
Merged-chr2-156729891-4	chr2	156729829	156730029	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	8650.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	14.54	6.29	21.68	18.1	25.36	15.37	22.26	18.39	11.01	15.57	12.56	7.21
Merged-chr2-78046196-1	chr2	78046096	78046296	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-4981.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.23	2.77	2.28	10.46	2.86	7.84	2.99	7.68	3.34	6.53	5.02	3.76
Merged-chr17-34346336-1	chr17	34346236	34346436	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	16.15	22.89	30.23	11.26	6.55	2.2	3.99	2.64	0.59	0.0	1.0	3.45
Merged-chr19-5569022-3	chr19	5568923	5569123	+	915.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	999.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	18.17	11.07	14.26	9.25	15.14	19.13	10.63	14.07	35.21	23.6	23.11	16.6
Merged-chr16-17111132-3	chr16	17111022	17111222	+	915.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252445, intron 1 of 19)	CpG	130.0	NM_001252445	66053.0	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	9.29	18.61	13.69	12.87	16.77	12.54	16.28	15.34	10.23	18.58	17.08	12.22
Merged-chr4-58911741-3	chr4	58911646	58911846	+	915.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355697, intron 1 of 49)	CpG	184.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	9.69	24.65	8.56	12.87	16.36	14.11	36.54	19.57	17.51	14.56	21.61	18.8
Merged-chr8-104375439-3	chr8	104375343	104375543	+	915.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20364.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	12.92	10.82	16.54	10.86	22.91	11.29	18.27	35.16	17.7	18.58	27.64	15.98
Merged-chr6-148761606-3	chr6	148761513	148761713	+	915.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69854.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	14.94	20.63	29.66	28.56	9.0	15.05	9.97	20.5	16.92	13.05	30.15	10.96
Merged-chr4-102647248-3	chr4	102647156	102647356	+	915.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57413.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.67	12.83	10.84	8.45	25.77	13.48	15.28	10.04	20.26	19.58	19.6	16.6
Merged-chr11-9373332-3	chr11	9373243	9373443	+	915.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178259, exon 30 of 62)	exon (NM_178259, exon 30 of 62)	181401.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	7.27	5.28	11.41	14.48	20.05	9.09	17.27	25.37	24.78	27.11	33.67	13.16
Merged-chr10-117940833-1	chr10	117940733	117940933	+	915.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15374.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	12.11	6.79	1.71	1.21	10.64	14.11	3.99	3.34	18.29	24.6	15.07	9.08
Merged-chr17-74442142-3	chr17	74442000	74442200	+	915.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 4 of 8)	MLTR18B_MM|LTR|ERVK	17008.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	15.75	9.56	6.28	4.83	8.18	10.66	12.62	5.27	14.75	14.56	15.58	7.52
Merged-chr4-59265841-3	chr4	59265762	59265962	+	915.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105031, intron 3 of 3)	intron (NR_105031, intron 3 of 3)	5811.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	10.9	10.56	17.11	15.28	22.91	18.81	17.27	32.61	14.95	10.54	28.14	11.28
Merged-chrX-93756611-3	chrX	93756519	93756719	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75476.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	12.11	13.83	13.12	11.66	20.86	13.17	14.28	21.53	33.24	12.05	19.6	16.6
Merged-chr2-102973102-4	chr2	102972964	102973164	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71399.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.83	1.01	7.42	3.62	4.09	6.9	4.65	4.49	6.69	9.54	4.02	5.01
Merged-chr17-26090439-3	chr17	26090322	26090522	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011933)	promoter-TSS (NM_011933)	-258.0	NM_011933	26378.0	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	22.21	15.59	7.99	37.0	15.55	14.11	10.63	9.48	16.52	10.04	13.06	12.84
Merged-chr6-88904939-6	chr6	88904849	88905049	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011906, intron 1 of 11)	PB1D10|SINE|Alu	2698.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	10.5	11.57	18.83	5.23	9.0	9.72	15.94	19.15	11.8	6.03	10.05	8.14
Merged-chr14-62865636-3	chr14	62865558	62865758	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105860)	TTS (NR_105860)	116.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	35.53	20.37	21.11	20.11	23.32	25.4	19.6	25.74	29.9	12.05	13.06	13.78
Merged-chr6-52471755-3	chr6	52471645	52471845	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20706.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	11.71	11.32	6.85	16.09	13.09	18.5	12.95	15.56	17.11	13.05	14.57	4.7
Merged-chr10-37359139-3	chr10	37359029	37359229	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-220203.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	16.15	8.8	3.42	13.67	13.09	15.37	9.3	13.63	13.57	14.06	24.12	4.39
Merged-chr7-118481594-2	chr7	118481475	118481675	+	915.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10400.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.44	2.01	13.12	5.63	13.5	5.33	4.32	8.13	51.14	39.67	42.71	21.93
Merged-chr7-80081424-1	chr7	80081324	80081524	+	915.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6167.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.23	2.52	13.69	2.41	13.91	6.9	7.64	10.23	1.77	6.03	7.03	4.39
Merged-chr13-105310789-4	chr13	105310661	105310861	+	915.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16276.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.63	2.01	7.42	4.83	2.86	3.14	5.65	52.43	7.08	5.02	16.08	4.07
Merged-chr13-49213760-3	chr13	49213606	49213806	+	915.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	2320.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	14.54	8.05	9.7	9.25	18.82	14.11	25.91	26.55	17.9	12.05	13.06	10.02
Merged-chr5-134342766-3	chr5	134342683	134342883	+	915.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16329.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	21.8	11.32	12.55	28.96	18.82	11.6	10.63	15.98	11.21	8.54	22.61	14.1
Merged-chr5-76705627-3	chr5	76705518	76705718	+	915.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	113904.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	13.33	11.07	19.4	10.86	18.82	13.8	12.29	23.13	35.01	34.14	27.13	13.78
Merged-chr10-117866329-3	chr10	117866224	117866424	+	915.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20350.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	10.9	7.55	22.82	20.11	22.91	20.07	9.3	17.07	34.42	13.56	28.14	25.37
Merged-chr10-40832407-3	chr10	40832301	40832501	+	915.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027879, exon 15 of 15)	3' UTR (NM_027879, exon 15 of 15)	50742.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	18.98	8.55	18.25	23.33	10.23	11.6	22.26	24.87	21.24	12.55	35.17	19.11
Merged-chr2-91081140-4	chr2	91080989	91081189	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10774.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	4.85	3.02	7.42	6.03	6.14	3.76	2.66	9.87	13.57	12.55	10.55	5.01
Merged-chr16-91861548-3	chr16	91861502	91861702	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	70028.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	12.92	5.79	9.13	3.22	21.27	53.31	21.59	11.69	15.74	21.59	12.06	3.76
Merged-chr19-32953513-3	chr19	32953430	32953630	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	195953.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	18.57	17.61	13.69	15.28	18.0	12.23	4.32	17.52	20.65	14.06	15.07	13.78
Merged-chr6-128135942-3	chr6	128135817	128136017	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	7661.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	17.77	8.55	6.28	12.87	14.32	21.32	11.96	11.94	22.23	18.58	14.57	17.54
Merged-chr5-9059535-3	chr5	9059445	9059645	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41192.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	14.13	13.08	12.55	11.66	11.86	19.13	15.28	16.4	34.42	16.57	25.12	16.6
Merged-chr17-37483665-2	chr17	37483554	37483754	+	915.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347387)	promoter-TSS (NM_001347387)	-100.0	NM_001347387	14990.0	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	34.73	51.56	38.22	14.08	5.73	17.25	5.65	5.97	29.7	20.08	14.57	8.46
Merged-chr13-69559330-2	chr13	69559226	69559426	+	915.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-E-int|LTR|ERVL	-25462.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	7.67	6.04	23.39	24.94	9.41	5.96	13.62	25.88	0.0	0.0	1.0	0.0
Merged-chr5-43186813-3	chr5	43186702	43186902	+	915.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-46661.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	15.75	8.55	34.23	16.09	27.41	20.38	26.57	40.21	39.73	41.17	31.66	17.23
Merged-chrX-142228262-3	chrX	142228179	142228379	+	915.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290533)	promoter-TSS (NM_001290533)	102.0	NM_172782	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	9.29	14.84	9.7	16.49	9.0	18.5	28.57	18.87	15.34	19.58	19.09	11.9
Merged-chr8-26884615-3	chr8	26884526	26884726	+	915.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-60203.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	14.13	16.1	15.97	27.35	18.0	11.92	17.94	49.74	15.54	12.55	13.06	13.78
Merged-chr10-94405684-3	chr10	94405570	94405770	+	915.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	L2c|LINE|L2	93721.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	12.92	8.05	14.83	9.25	20.05	17.87	19.27	23.97	18.69	26.11	10.05	22.56
Merged-chr16-85172640-5	chr16	85172546	85172746	+	915.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	CpG	1061.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.65	6.79	3.99	11.66	12.27	5.02	9.97	14.55	19.08	12.55	20.1	6.58
Merged-chr11-61929499-3	chr11	61929402	61929602	+	915.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	755.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	27.86	14.59	19.97	3.22	19.64	35.75	9.63	24.98	37.76	10.54	20.6	9.08
Merged-chr2-180124859-2	chr2	180124753	180124953	+	915.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	5487.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	11.71	11.32	11.98	21.32	13.09	15.05	15.61	20.89	0.39	2.01	1.51	2.51
Merged-chr13-59834990-2	chr13	59834895	59835095	+	915.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11848.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	15.75	9.31	21.11	21.32	7.36	6.59	10.3	19.51	6.88	13.05	8.04	3.45
Merged-chr18-58530604-3	chr18	58530498	58530698	+	915.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25642.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	10.9	10.56	16.54	28.96	19.64	16.93	22.92	28.15	23.21	17.57	22.11	26.31
Merged-chr6-113001023-3	chr6	113000847	113001047	+	915.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45355.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	4.85	5.03	0.0	9.65	5.73	7.21	8.97	5.55	6.49	11.55	6.53	7.52
Merged-chr4-149638128-3	chr4	149638033	149638233	+	915.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023051, intron 9 of 18)	intron (NM_023051, intron 9 of 18)	17434.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	22.21	27.67	15.97	18.1	33.55	31.36	13.62	27.95	12.98	16.57	6.53	11.28
Merged-chr12-112746907-2	chr12	112746807	112747007	+	915.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001024602)	TTS (NM_001024602)	13585.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	18.17	6.04	21.11	7.24	3.68	8.15	2.99	9.64	4.13	8.03	4.02	4.07
Merged-chr12-100609985-3	chr12	100609887	100610087	+	915.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-89165.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	14.54	9.56	10.84	16.09	13.91	11.6	5.65	17.24	16.33	16.07	16.58	15.66
Merged-chr15-80088804-3	chr15	80088719	80088919	+	915.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2515.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	14.54	15.85	5.7	11.66	13.91	20.7	9.63	9.25	27.54	13.56	45.73	10.34
Merged-chr13-111968749-3	chr13	111968660	111968860	+	915.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100824.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	20.19	8.3	15.97	12.87	31.09	15.05	15.28	33.67	22.82	16.07	25.12	13.78
Merged-chr8-70841322-3	chr8	70841234	70841434	+	915.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_032397)	TTS (NM_032397)	-1614.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	7.67	13.58	14.83	8.85	13.09	18.5	4.32	9.14	12.0	10.54	10.55	10.34
Merged-chr4-105478467-2	chr4	105478372	105478572	+	915.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	321125.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.27	1.01	13.69	4.42	10.64	10.03	11.96	19.68	17.11	10.04	18.09	17.23
Merged-chr4-132178791-3	chr4	132178704	132178904	+	915.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33452.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	16.56	14.34	11.98	8.45	11.86	15.37	13.62	12.25	16.52	11.55	19.6	14.41
Merged-chr1-155413629-3	chr1	155413522	155413722	+	915.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	3822.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	21.4	16.1	13.12	18.5	18.41	19.76	9.3	21.28	23.8	10.54	17.08	13.16
Merged-chr2-27739596-3	chr2	27739423	27739623	+	915.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	28940.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	18.17	9.56	6.85	10.46	16.36	9.72	12.62	8.5	19.08	19.08	7.54	6.89
Merged-chr12-112631642-2	chr12	112631515	112631715	+	915.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11568.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.67	6.79	10.27	1.21	11.45	13.8	9.63	10.32	12.39	12.55	8.54	9.4
Merged-chr5-105145930-3	chr5	105145811	105146011	+	915.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6325.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	9.29	17.36	35.94	22.12	13.5	10.35	6.64	11.78	25.18	38.66	23.62	14.72
Merged-chr11-86819431-2	chr11	86819359	86819559	+	915.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11799.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.81	0.75	1.14	2.01	11.86	15.99	11.29	14.44	11.6	12.05	8.04	8.77
Merged-chr12-101759908-3	chr12	101759824	101760024	+	915.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-41401.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	6.46	10.82	13.12	13.67	8.59	7.84	4.98	8.47	15.34	15.57	17.08	17.54
Merged-chr6-38742697-1	chr6	38742597	38742797	+	915.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 6 of 14)	intron (NM_010433, intron 6 of 14)	79628.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.06	1.51	6.85	5.23	10.64	1.88	14.28	17.19	7.08	3.51	8.54	5.01
Merged-chr13-112335815-1	chr13	112335715	112335915	+	915.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	47297.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.4	1.01	0.0	2.01	14.73	10.03	12.29	19.63	1.38	1.0	1.51	3.76
Merged-chr2-33436449-3	chr2	33436337	33436537	+	915.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5113.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	10.5	5.53	10.84	9.65	13.91	16.31	10.3	19.91	25.57	20.59	25.12	9.71
Merged-chr7-126625597-3	chr7	126625506	126625706	+	915.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-136.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	19.79	18.11	14.26	9.65	13.91	68.67	15.28	9.17	39.14	45.19	34.67	16.29
Merged-chr12-113153332-1	chr12	113153232	113153432	+	915.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007763, exon 2 of 5)	exon (NM_007763, exon 2 of 5)	1320.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	3.23	6.29	0.57	4.83	5.73	8.78	8.3	9.59	1.57	0.5	3.01	5.64
Merged-chr3-89242651-3	chr3	89242567	89242767	+	915.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121683, intron 3 of 10)	intron (NR_121683, intron 3 of 10)	2346.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	16.96	9.81	17.68	10.46	19.64	20.07	11.96	20.47	24.0	36.15	22.61	14.41
Merged-chr6-140888925-3	chr6	140888835	140889035	+	915.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	262050.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.46	9.31	13.69	13.67	18.82	12.86	22.26	26.72	19.67	12.05	20.1	11.9
Merged-chr2-154406790-3	chr2	154406666	154406866	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009228, intron 1 of 7)	MIR3|SINE|MIR	1318.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	35.53	14.09	18.25	12.47	17.18	10.66	9.3	17.5	18.69	11.55	14.57	9.08
Merged-chr7-98672737-3	chr7	98672646	98672846	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16177.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	12.92	5.53	16.54	16.89	17.18	21.32	8.97	19.71	13.57	17.57	19.09	15.98
Merged-chr19-29498095-3	chr19	29497995	29498195	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	23892.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	14.13	11.32	9.7	6.03	22.5	13.17	12.62	19.18	15.34	19.08	26.13	13.78
Merged-chr3-87329956-3	chr3	87329871	87330071	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-27910.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	8.48	10.56	15.97	7.64	17.18	19.44	9.3	13.09	29.11	28.12	33.16	23.81
Merged-chr3-58657549-3	chr3	58657447	58657647	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	5505.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	13.73	13.83	11.98	20.51	13.5	13.17	7.97	21.03	19.87	15.06	29.65	3.45
Merged-chr10-91701984-3	chr10	91701865	91702065	+	915.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186864.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	10.09	9.81	15.4	23.33	25.77	20.7	36.21	79.21	15.93	16.57	33.67	20.36
Merged-chr7-67440830-3	chr7	67440725	67440925	+	915.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67967.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	16.15	8.3	11.41	18.1	18.0	15.37	12.29	12.81	16.13	18.58	35.68	12.84
Merged-chr7-112000333-3	chr7	112000218	112000418	+	915.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23188.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	7.27	24.65	30.8	15.28	2.86	6.9	5.31	12.03	25.77	18.08	31.15	17.54
Merged-chr8-111743859-1	chr8	111743759	111743959	+	915.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009954)	promoter-TSS (NM_009954)	-10.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	10.09	1.76	4.56	4.02	11.05	5.96	7.31	10.29	0.59	4.52	7.03	2.82
Merged-chr19-56535232-1	chr19	56535132	56535332	+	915.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153440, intron 8 of 9)	L1MB7|LINE|L1	12890.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	4.85	3.77	2.28	0.0	16.77	6.27	20.93	11.02	6.88	10.54	8.04	6.27
Merged-chr7-54836269-1	chr7	54836169	54836369	+	915.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	1024.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	2.02	1.26	6.28	2.01	11.45	17.56	6.64	10.26	0.59	0.0	2.01	1.25
Merged-chr2-153292611-3	chr2	153292547	153292747	+	915.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	1231.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	17.36	9.81	15.97	1.61	10.64	21.64	7.97	12.79	14.75	15.57	12.06	5.95
Merged-chr7-45155092-3	chr7	45154989	45155189	+	915.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285904)	promoter-TSS (NM_001285904)	-551.0	NM_145954	69748.0	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	13.33	15.59	8.56	6.03	23.73	19.76	16.61	10.71	27.34	19.58	20.1	14.41
Merged-chr11-69401401-3	chr11	69401298	69401498	+	915.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 17 of 22)	intron (NM_001017426, intron 17 of 22)	-3164.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	16.56	8.8	14.26	11.66	20.05	18.19	6.98	5.8	24.59	18.58	22.61	14.1
Merged-chr3-65973519-3	chr3	65973414	65973614	+	915.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15265.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	22.61	8.3	14.83	5.23	14.32	21.01	11.29	16.04	23.01	25.11	26.63	14.1
Merged-chr12-84180893-3	chr12	84180800	84181000	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	B4A|SINE|B4	13115.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	24.63	22.39	37.65	10.86	13.91	17.25	12.62	12.39	35.21	17.57	25.12	8.14
Merged-chr6-55017810-3	chr6	55017713	55017913	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20188.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	24.23	19.12	19.97	20.11	20.05	14.11	12.62	27.42	10.03	14.56	9.04	13.47
Merged-chr2-29787652-3	chr2	29787541	29787741	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	30.0	NM_001290496	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	15.75	10.06	7.99	6.44	16.77	22.89	12.29	8.75	27.54	16.07	30.15	10.96
Merged-chr9-5309518-2	chr9	5309408	5309608	+	915.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	659.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	6.86	9.56	7.99	4.83	8.18	19.13	18.27	14.97	13.18	22.59	29.65	4.7
Merged-chr3-136113195-3	chr3	136113117	136113317	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	212849.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	17.77	14.59	30.8	20.91	35.18	28.54	26.57	29.89	15.74	9.54	17.08	8.46
Merged-chr15-81103899-3	chr15	81103795	81103995	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1152.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	12.52	14.34	9.13	18.5	18.41	11.6	17.27	27.45	14.75	10.04	17.59	9.71
Merged-chr12-32138547-2	chr12	32138445	32138645	+	915.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69793.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	10.09	9.31	5.13	4.02	13.09	10.66	7.97	13.99	9.24	4.02	7.54	1.88
Merged-chr1-66818274-2	chr1	66818149	66818349	+	915.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	-654.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	4.44	3.52	1.71	2.01	9.0	17.56	10.96	11.66	29.11	12.55	18.09	15.04
Merged-chr1-13370578-3	chr1	13370487	13370687	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	1842.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	20.19	20.37	26.24	15.28	11.45	24.46	5.31	7.04	38.35	30.63	27.13	14.72
Merged-chr8-77444894-3	chr8	77444703	77444903	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72253.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.65	2.52	2.28	3.62	14.73	15.37	33.22	26.02	19.08	25.11	35.17	16.6
Merged-chr6-148989686-3	chr6	148989603	148989803	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43233.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	11.71	13.83	23.96	18.1	19.64	7.21	8.97	21.25	23.01	29.12	31.66	15.04
Merged-chr11-82845497-3	chr11	82845353	82845553	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164570, intron 1 of 7)	intron (NM_001164570, intron 1 of 7)	-16410.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	14.54	11.07	20.54	4.02	15.14	21.95	5.65	9.0	8.06	13.56	9.55	6.58
Merged-chr13-67637370-3	chr13	67637263	67637463	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183146, intron 1 of 3)	intron (NM_183146, intron 1 of 3)	390.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	8.88	13.83	14.26	10.05	7.36	17.25	13.62	13.15	43.86	33.14	56.78	16.29
Merged-chr2-5691980-3	chr2	5691909	5692109	+	915.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	-15963.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	15.75	7.8	19.97	23.73	22.91	24.15	27.9	34.01	9.44	15.57	28.14	17.23
Merged-chr14-118910113-3	chr14	118910028	118910228	+	915.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360412, intron 8 of 22)	PB1D10|SINE|Alu	12663.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	19.79	10.82	13.12	11.26	21.68	22.89	25.91	27.06	22.23	16.57	43.72	5.95
Merged-chr13-8644172-3	chr13	8644066	8644266	+	915.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	ORR1E|LTR|ERVL-MaLR	226878.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	10.5	8.3	22.25	12.47	68.73	65.22	92.68	103.32	27.73	26.61	54.77	30.07
Merged-chr10-86296261-3	chr10	86296018	86296218	+	915.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164495, intron 6 of 6)	intron (NM_001164495, intron 6 of 6)	-4294.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	3.63	3.02	1.14	4.83	2.05	4.08	10.63	3.2	7.87	3.51	10.55	2.82
Merged-chr18-81536939-3	chr18	81536820	81537020	+	915.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	455160.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	9.69	8.55	24.53	12.07	6.95	10.98	7.31	13.21	17.11	18.08	19.09	19.42
Merged-chr5-77167516-1	chr5	77167416	77167616	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43689.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	1.21	0.0	1.14	1.61	2.45	1.88	7.64	6.17	1.97	3.51	5.02	1.57
Merged-chr2-79677839-1	chr2	79677739	79677939	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29941.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.81	0.5	0.0	0.4	7.36	3.76	2.99	7.26	3.54	0.0	1.0	1.25
Merged-chr17-32492480-1	chr17	32492380	32492580	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177307, exon 14 of 14)	3' UTR (NM_177307, exon 14 of 14)	-13982.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	1.62	3.52	3.42	2.82	1.23	1.25	2.99	7.96	1.57	0.5	4.02	6.89
Merged-chr1-62715183-1	chr1	62715083	62715283	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077404, intron 1 of 16)	B3|SINE|B2	11866.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	13.33	13.83	15.97	10.05	2.86	12.54	0.0	1.46	3.54	3.01	0.5	1.88
Merged-chr1-143956384-1	chr1	143956284	143956484	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47765.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.4	4.02	1.71	1.61	1.64	3.45	7.31	7.68	7.28	8.54	9.04	8.14
Merged-chr17-34312439-3	chr17	34312342	34312542	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	6575.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	30.28	37.98	67.31	32.58	8.59	8.78	4.32	6.22	52.12	23.1	35.68	29.45
Merged-chr13-24037684-1	chr13	24037584	24037784	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026825, intron 33 of 37)	intron (NM_026825, intron 33 of 37)	-46470.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	8.08	5.79	12.55	9.65	5.32	6.27	8.64	13.43	2.75	5.52	7.03	3.13
Merged-chr12-38594292-2	chr12	38594191	38594391	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	20230.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	8.88	5.28	18.25	7.24	16.36	11.92	14.62	27.98	17.31	8.03	17.08	15.66
Merged-chr1-151103841-1	chr1	151103741	151103941	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34193.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	9.69	2.26	4.56	0.8	5.32	12.23	5.98	8.75	5.7	7.03	13.57	3.13
Merged-chr2-160250095-1	chr2	160249995	160250195	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77399.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	2.83	4.02	13.12	10.86	6.55	6.59	17.94	21.81	11.41	10.54	16.58	9.4
Merged-chr12-55482269-1	chr12	55482169	55482369	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10378.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.48	4.78	0.0	0.8	8.18	2.51	0.33	0.7	2.75	7.03	1.0	0.31
Merged-chr8-43368739-1	chr8	43368639	43368839	+	915.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61730.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	1.62	0.25	0.0	0.0	1.23	2.2	3.65	5.58	8.85	7.03	27.13	9.71
Merged-chr12-8947875-3	chr12	8947789	8947989	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-40.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	10.5	4.78	10.27	12.07	17.18	10.66	11.63	13.21	14.75	16.57	21.1	8.14
Merged-chr7-113197418-3	chr7	113197324	113197524	+	914.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10041.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	12.11	7.55	11.98	23.73	21.68	6.9	14.28	16.23	14.75	14.06	12.06	12.22
Merged-chr9-116164189-3	chr9	116164082	116164282	+	914.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	11181.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	23.42	13.33	58.76	30.97	39.27	14.11	41.85	51.59	14.95	8.54	19.6	9.08
Merged-chr5-74471964-3	chr5	74471865	74472065	+	914.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 3 of 8)	intron (NM_001114660, intron 3 of 8)	59777.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	13.73	9.56	13.69	11.26	14.32	10.03	12.62	15.56	27.14	19.08	17.59	10.96
Merged-chr9-114815508-3	chr9	114815399	114815599	+	914.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	28653.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	14.94	14.09	5.7	9.25	15.55	14.74	7.31	13.77	22.82	15.57	31.15	8.14
Merged-chr7-122813968-3	chr7	122813870	122814070	+	914.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	142226.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	15.75	10.56	10.27	6.03	16.77	19.44	7.97	16.07	25.37	9.54	39.7	14.1
Merged-chr19-55544629-3	chr19	55544529	55544729	+	914.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	L1MB8|LINE|L1	157575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	16.56	12.32	30.8	21.32	18.82	22.26	17.27	23.13	16.13	9.04	14.07	8.14
Merged-chr3-83798008-3	chr3	83797916	83798116	+	914.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31695.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	14.13	11.07	23.39	12.87	19.64	15.68	12.62	19.01	9.64	23.6	25.63	11.59
Merged-chr3-145649426-2	chr3	145649336	145649536	+	914.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010516, intron 1 of 4)	CpG	549.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	2.83	3.77	4.56	4.83	6.55	7.84	4.65	7.49	15.54	15.57	19.6	11.28
Merged-chr18-39542019-3	chr18	39541926	39542126	+	914.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54781.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	16.15	8.05	11.98	17.29	14.73	14.74	9.3	16.29	18.69	17.57	10.55	12.84
Merged-chr7-38025068-3	chr7	38024977	38025177	+	914.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-5525.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	19.79	16.6	25.67	13.27	22.5	17.87	12.29	27.08	12.19	13.56	6.53	1.25
Merged-chr17-23985179-2	chr17	23985092	23985292	+	914.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9962.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.02	6.79	10.84	2.82	12.27	6.27	9.97	11.07	19.47	28.62	22.11	10.02
Merged-chr8-22807367-4	chr8	22807256	22807456	+	914.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1702.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	13.73	14.34	4.56	3.22	8.59	8.47	6.31	6.59	16.92	20.08	13.57	10.34
Merged-chr14-70213241-2	chr14	70213129	70213329	+	914.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5558.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	18.57	7.8	10.84	4.02	18.41	10.66	16.28	9.22	11.21	15.06	14.57	12.84
Merged-chr11-99447280-3	chr11	99447185	99447385	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-9132.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	15.34	19.12	33.09	17.7	15.96	22.89	10.96	20.02	22.03	13.56	30.65	21.62
Merged-chr15-25322259-3	chr15	25322157	25322357	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91507.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	10.5	9.31	21.68	8.85	25.36	11.29	20.59	21.34	25.77	19.58	36.18	13.78
Merged-chr10-94333534-3	chr10	94333436	94333636	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	21587.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.46	14.59	13.69	17.7	6.95	19.13	8.64	22.26	23.41	12.05	23.62	16.6
Merged-chr10-20056476-3	chr10	20056367	20056567	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-92453.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	9.69	11.57	9.13	12.07	20.86	17.87	11.29	24.39	17.51	14.56	29.14	9.4
Merged-chr5-19952571-3	chr5	19952453	19952653	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	45035.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	16.15	10.56	7.42	12.47	14.73	6.27	31.22	29.89	19.67	13.56	16.58	12.22
Merged-chr13-119488025-3	chr13	119487935	119488135	+	914.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-4.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	17.77	12.32	16.54	18.1	18.82	7.84	7.64	18.7	12.59	7.03	21.1	12.84
Merged-chr18-65506018-3	chr18	65505911	65506111	+	914.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	MTC-int|LTR|ERVL-MaLR	-74219.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	21.4	16.35	32.52	22.93	20.46	33.87	32.55	34.51	13.96	7.53	10.55	9.71
Merged-chr18-90509488-3	chr18	90509418	90509618	+	914.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-636.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	8.08	16.85	6.28	11.26	9.82	5.64	11.96	11.16	12.0	20.08	10.55	13.47
Merged-chr6-136717724-1	chr6	136717624	136717824	+	914.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-55831.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.21	2.26	0.0	0.8	0.82	0.0	2.66	2.19	12.0	15.57	13.06	14.72
Merged-chr10-86685529-4	chr10	86685435	86685635	+	914.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015572)	promoter-TSS (NR_015572)	8.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	7.27	5.03	6.28	2.82	12.27	14.42	12.95	11.41	15.74	27.62	14.57	13.78
Merged-chr6-93757569-3	chr6	93757459	93757659	+	914.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029850, intron 9 of 23)	intron (NM_001029850, intron 9 of 23)	155404.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	38.36	23.9	16.54	26.14	31.09	40.76	36.21	51.95	13.18	12.55	22.11	6.58
Merged-chrX-36841895-3	chrX	36841795	36841995	+	914.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22351.0	NM_029951	77644.0	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	11.31	6.29	19.97	14.88	18.0	14.11	19.93	24.2	17.51	17.57	26.13	13.47
Merged-chr7-27508761-3	chr7	27508671	27508871	+	914.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019412, intron 5 of 5)	B3|SINE|B2	9447.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	23.42	13.33	13.69	15.28	9.41	22.26	6.98	11.5	20.65	15.06	19.09	5.33
Merged-chr16-93606826-3	chr16	93606725	93606925	+	914.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	12.92	12.58	6.85	5.23	9.82	12.54	3.99	9.95	19.08	7.03	14.57	9.4
Merged-chr2-62685450-2	chr2	62685346	62685546	+	914.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145523, intron 3 of 7)	intron (NM_145523, intron 3 of 7)	21119.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.81	2.26	1.14	2.82	6.14	16.62	5.98	6.67	15.54	14.06	20.6	11.9
Merged-chr7-120831025-6	chr7	120830930	120831130	+	914.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11801.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	19.79	12.07	12.55	12.07	9.41	9.41	6.64	13.37	9.05	13.05	11.05	5.64
Merged-chr9-20690697-3	chr9	20690600	20690800	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357639, intron 1 of 5)	L1_Mus1|LINE|L1	36303.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	7.27	13.33	14.83	18.9	5.32	21.01	11.63	14.72	16.92	10.54	44.22	19.11
Merged-chr18-65555130-1	chr18	65555030	65555230	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 1 of 6)	LTR16E1|LTR|ERVL	-25100.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.86	3.77	7.99	10.05	4.5	10.03	8.3	11.61	10.03	6.03	5.53	5.64
Merged-chr11-102246451-3	chr11	102246345	102246545	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2437.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	12.11	4.53	12.55	9.65	27.82	24.77	34.88	27.31	26.55	29.62	31.66	22.24
Merged-chr13-63246636-1	chr13	63246536	63246736	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	6607.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.25	4.78	7.99	7.64	8.59	7.84	12.29	7.18	3.54	6.53	3.52	4.7
Merged-chr8-14815866-1	chr8	14815766	14815966	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-72670.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.85	4.78	7.42	1.61	11.45	10.35	12.62	10.85	8.46	7.03	6.03	12.84
Merged-chr6-97299550-1	chr6	97299450	97299650	+	914.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 20 of 23)	ORR1F|LTR|ERVL-MaLR	-46770.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.04	0.5	5.7	0.8	0.0	1.57	1.99	5.13	19.87	26.11	18.59	4.7
Merged-chr18-21669945-1	chr18	21669845	21670045	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17577.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	4.44	6.54	5.13	6.03	13.5	15.05	8.97	13.09	1.57	0.5	2.01	2.19
Merged-chr6-42645387-1	chr6	42645287	42645487	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146174)	promoter-TSS (NM_146174)	-346.0	NM_146174	232748.0	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	4.85	2.01	3.42	3.62	11.86	5.02	8.64	12.0	5.31	7.53	4.52	6.58
Merged-chr1-82761935-3	chr1	82761838	82762038	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6518.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	9.69	7.04	11.41	7.24	27.82	23.83	13.62	26.13	30.29	30.63	27.13	17.54
Merged-chr10-7333585-2	chr10	7333482	7333682	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121345.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	14.13	14.84	14.83	10.86	11.86	9.09	7.64	15.59	4.33	6.53	11.05	3.45
Merged-chr1-185276053-1	chr1	185275953	185276153	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 29 of 34)	L3|LINE|CR1	33078.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.0	4.28	2.28	0.4	13.91	3.14	7.64	15.67	0.39	2.01	0.0	0.94
Merged-chr1-39602663-3	chr1	39602564	39602764	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-25317.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	8.08	11.82	11.41	2.41	25.77	23.52	16.28	32.72	28.13	28.62	24.62	14.72
Merged-chr14-54579831-1	chr14	54579731	54579931	+	914.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2170.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	4.04	4.78	6.85	2.41	3.27	10.03	2.33	3.03	16.33	18.08	21.1	10.02
Merged-chrX-10729676-2	chrX	10729571	10729771	+	914.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12306.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	6.46	6.54	7.42	6.03	13.91	6.9	6.64	15.0	20.26	24.6	10.55	11.59
Merged-chr11-51926395-2	chr11	51926296	51926496	+	914.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41235.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.44	4.53	6.28	0.0	3.27	8.15	10.63	7.91	19.47	11.55	18.09	15.35
Merged-chr11-22008239-2	chr11	22008138	22008338	+	914.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252515, intron 23 of 24)	intron (NM_001252515, intron 23 of 24)	-6587.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	6.46	6.54	3.42	14.08	11.05	6.59	16.28	11.64	4.72	15.57	22.11	5.33
Merged-chr3-84314741-3	chr3	84314638	84314838	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9963.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	8.48	12.83	30.8	10.46	22.5	21.64	9.3	33.14	12.39	14.56	24.12	15.98
Merged-chr3-133335310-3	chr3	133335210	133335410	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	25200.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	7.27	14.59	19.97	8.45	5.32	12.86	18.6	18.59	19.87	20.08	26.13	27.88
Merged-chr6-125071904-3	chr6	125071817	125072017	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	640.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	21.8	16.85	18.25	10.05	14.73	12.23	15.61	15.45	16.33	14.06	16.08	15.66
Merged-chr7-110627503-3	chr7	110627357	110627557	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009627)	promoter-TSS (NM_009627)	-200.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	10.5	5.28	9.7	7.24	7.77	14.42	8.97	11.07	15.54	8.03	9.04	7.83
Merged-chr14-68593585-3	chr14	68593466	68593666	+	914.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11494.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	5.25	4.78	23.96	21.32	15.14	17.25	21.26	17.92	15.54	12.55	11.56	14.72
Merged-chr16-50046099-5	chr16	50045995	50046195	+	914.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	26757.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	7.67	13.58	9.7	20.51	15.14	20.07	13.62	20.19	13.77	21.09	20.6	11.59
Merged-chr2-153122891-3	chr2	153122777	153122977	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14409.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	11.31	7.29	30.8	15.28	35.59	30.42	26.91	40.68	37.96	29.12	62.31	16.29
Merged-chr2-72366154-3	chr2	72366061	72366261	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80460.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	13.33	7.29	35.94	9.65	14.32	11.6	10.96	18.14	20.65	15.57	16.58	14.41
Merged-chr17-6697347-3	chr17	6697244	6697444	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	8272.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	22.21	16.1	14.26	19.71	20.05	27.91	20.26	10.79	13.57	21.09	15.07	8.77
Merged-chr10-8776136-3	chr10	8776021	8776221	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	109949.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	19.79	17.86	10.27	5.63	27.41	32.3	12.95	6.9	30.88	16.07	9.55	10.02
Merged-chr7-4067262-3	chr7	4067170	4067370	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4066.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	12.52	6.04	19.4	19.71	21.27	24.46	11.63	14.47	24.59	20.59	12.56	9.08
Merged-chr18-61132981-3	chr18	61132882	61133082	+	914.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134134, intron 20 of 20)	intron (NM_134134, intron 20 of 20)	15514.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	18.98	14.84	8.56	12.87	17.18	9.72	7.97	7.85	13.37	23.1	19.09	14.1
Merged-chr17-80565223-3	chr17	80565138	80565338	+	914.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-1404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	34.32	26.66	40.5	22.93	15.96	29.79	19.27	11.52	20.26	9.04	22.11	7.83
Merged-chr14-47507456-1	chr14	47507356	47507556	+	914.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 3 of 5)	intron (NR_027414, intron 3 of 5)	34895.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.0	2.26	5.13	0.0	0.0	0.94	0.0	0.0	16.92	8.54	14.07	15.35
Merged-chr5-113645758-2	chr5	113645636	113645836	+	914.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2133.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.86	3.77	7.99	2.41	11.86	7.21	9.3	14.27	12.59	10.04	11.05	8.46
Merged-chr2-155757067-1	chr2	155756967	155757167	+	914.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	5850.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	6.86	12.07	6.28	6.44	1.23	2.51	0.33	0.9	18.49	20.08	16.08	10.34
Merged-chr5-92256687-3	chr5	92256580	92256780	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011148)	promoter-TSS (NM_011148)	-402.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	18.98	21.13	26.81	20.11	13.91	11.92	16.94	29.89	10.62	11.55	9.04	8.77
Merged-chr15-53318161-2	chr15	53318068	53318268	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	28015.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	13.73	10.56	9.13	13.27	12.68	18.5	8.3	17.44	2.36	2.51	11.56	4.07
Merged-chr12-31917496-2	chr12	31917411	31917611	+	914.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163126, intron 19 of 22)	intron (NM_001163126, intron 19 of 22)	32734.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	7.27	3.02	9.7	7.24	9.41	5.64	15.61	11.86	9.24	18.08	16.58	15.98
Merged-chr14-17427084-1	chr14	17426984	17427184	+	914.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-233876.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.23	1.51	1.14	10.46	6.95	2.2	11.29	10.99	5.9	7.53	6.53	5.33
Merged-chr7-118764151-3	chr7	118764056	118764256	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 8 of 30)	RMER19B|LTR|ERVK	23885.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	13.73	9.06	14.26	3.62	31.5	38.57	26.24	33.56	13.18	17.57	24.62	9.71
Merged-chr16-30188174-3	chr16	30188068	30188268	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79364.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	10.09	14.84	6.85	14.08	15.55	18.81	21.92	34.12	16.52	14.06	29.65	15.35
Merged-chr8-122438159-3	chr8	122438057	122438257	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028354, intron 5 of 10)	intron (NR_028354, intron 5 of 10)	-5217.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	11.31	23.14	28.52	12.87	21.27	34.18	18.93	30.36	18.69	17.57	24.12	13.78
Merged-chr10-20663172-3	chr10	20663092	20663292	+	914.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	61886.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.25	9.31	19.4	12.47	12.68	7.21	6.64	17.61	11.41	3.51	17.59	5.33
Merged-chr4-135829198-3	chr4	135829039	135829239	+	914.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26932.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	14.13	8.55	3.42	6.44	23.32	14.11	14.95	18.34	12.59	25.61	9.55	5.95
Merged-chr10-80151304-3	chr10	80151209	80151409	+	914.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 2 of 7)	CT-rich|Low_complexity|Low_complexity	1627.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	15.34	5.53	17.68	5.63	8.18	13.48	15.94	6.7	18.1	18.08	16.08	17.86
Merged-chrX-112311495-4	chrX	112311453	112311653	+	914.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313734, intron 1 of 6)	intron (NM_001313734, intron 1 of 6)	201.0	NM_026565	68117.0	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	6.86	6.79	1.14	4.42	2.45	9.41	6.31	9.2	6.1	8.54	10.05	7.83
Merged-chr12-82246599-2	chr12	82246490	82246690	+	914.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	L1M4c|LINE|L1	-64759.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.04	0.75	6.85	8.85	11.05	15.05	14.28	16.68	13.18	13.05	16.08	14.72
Merged-chr6-48048618-3	chr6	48048565	48048765	+	914.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	-551.0	NM_001081382	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	10.5	10.56	9.13	18.1	6.95	15.68	6.31	18.39	13.18	4.02	10.05	5.64
Merged-chr17-80479824-3	chr17	80479734	80479934	+	914.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009231, intron 1 of 21)	CpG	619.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	12.11	7.55	18.25	19.71	2.05	12.54	21.26	16.91	15.34	11.05	17.59	12.53
Merged-chr16-87655203-3	chr16	87655097	87655297	+	914.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43757.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	12.92	13.33	7.42	10.86	28.23	32.93	49.83	43.26	17.11	28.62	25.63	11.59
Merged-chr9-120028087-3	chr9	120028004	120028204	+	914.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4506.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	28.27	15.34	26.81	20.51	13.09	26.65	12.95	16.32	16.13	13.56	11.05	9.4
Merged-chr5-92370584-3	chr5	92370494	92370694	+	914.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-7298.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	17.77	16.1	29.09	5.23	12.27	34.18	9.3	7.01	24.0	33.14	12.06	7.21
Merged-chr3-121494211-3	chr3	121494101	121494301	+	914.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	38143.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	12.92	19.37	21.11	18.9	12.68	14.11	9.63	15.67	23.21	11.55	13.06	10.65
Merged-chr2-12382799-3	chr2	12382693	12382893	+	914.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355537, intron 8 of 13)	intron (NM_001355537, intron 8 of 13)	36667.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	11.31	5.53	24.53	17.29	26.18	9.09	24.91	35.36	19.67	17.07	17.59	14.1
Merged-chr19-56723985-2	chr19	56723875	56724075	+	914.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	1603.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.65	4.53	2.28	9.65	4.09	3.76	5.98	7.12	8.06	11.05	7.03	5.64
Merged-chr2-166806069-2	chr2	166805956	166806156	+	914.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085495, intron 1 of 38)	MIR3|SINE|MIR	475.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	11.31	10.56	13.12	10.46	4.91	19.44	10.96	9.11	20.46	23.1	21.61	16.6
Merged-chr13-120300261-2	chr13	120300184	120300384	+	914.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-108.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	8.48	9.06	21.68	15.69	8.59	0.31	6.31	14.16	6.69	5.02	6.03	3.76
Merged-chr9-113782818-3	chr9	113782723	113782923	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	L1MB8|LINE|L1	-10507.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	13.73	10.56	13.69	12.07	24.14	15.05	12.62	17.07	17.7	13.05	9.55	18.48
Merged-chr14-54900553-3	chr14	54900453	54900653	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6410.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	18.17	12.83	11.98	13.67	16.77	17.87	8.3	19.79	37.37	18.08	17.08	20.05
Merged-chrX-17564951-3	chrX	17564837	17565037	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313746, intron 3 of 4)	HAL1|LINE|L1	7070.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	14.54	8.3	21.68	19.71	16.77	27.91	23.25	33.31	25.77	7.03	26.63	12.22
Merged-chrX-162760866-3	chrX	162760795	162760995	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009031, intron 1 of 11)	CpG	523.0	NM_009031	245688.0	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7, chromatin remodeling factor	protein-coding	13.73	13.83	11.41	9.25	18.0	11.92	17.27	17.97	15.74	14.06	24.12	22.87
Merged-chr13-76633908-1	chr13	76633808	76634008	+	914.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	248947.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.0	0.75	1.14	2.41	1.64	1.25	1.99	1.65	15.34	6.53	24.12	8.77
Merged-chr1-134074611-7	chr1	134074522	134074722	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007570)	TTS (NM_007570)	4533.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	9.69	15.34	18.25	27.75	7.36	14.74	11.29	12.5	9.64	11.05	12.56	9.08
Merged-chr4-105643169-1	chr4	105643069	105643269	+	914.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	485822.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.23	3.02	3.42	6.44	12.27	9.09	25.91	42.79	2.75	7.03	9.04	4.39
Merged-chr1-173429824-1	chr1	173429724	173429924	+	914.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	9220.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.63	4.02	1.71	0.8	0.82	0.31	2.33	2.1	18.29	12.55	15.07	13.78
Merged-chr9-78109893-3	chr9	78109809	78110009	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081490)	promoter-TSS (NM_001081490)	717.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	8.08	24.65	14.83	18.5	24.96	43.9	12.62	18.53	21.83	26.11	31.66	14.41
Merged-chr15-101367666-3	chr15	101367554	101367754	+	914.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028770, intron 1 of 8)	intron (NM_028770, intron 1 of 8)	-1698.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	20.59	10.31	3.99	11.26	7.77	16.31	10.96	8.36	15.14	5.52	19.6	5.33
Merged-chr17-24533786-3	chr17	24533697	24533897	+	914.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177375)	promoter-TSS (NM_177375)	-50.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	25.04	21.13	21.68	13.67	18.82	22.58	14.62	14.38	25.77	11.55	30.15	10.02
Merged-chr2-71873893-4	chr2	71873795	71873995	+	914.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172665, intron 1 of 10)	intron (NM_172665, intron 1 of 10)	671.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.65	8.3	4.56	3.22	6.14	4.39	3.99	5.72	9.24	15.06	4.52	8.77
Merged-chr11-62575974-3	chr11	62575876	62576076	+	914.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011706, exon 2 of 16)	5' UTR (NM_011706, exon 2 of 16)	1490.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	14.13	20.63	7.99	8.45	13.5	14.74	20.26	7.29	11.8	18.58	14.57	8.77
Merged-chr7-17063141-2	chr7	17063025	17063225	+	914.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-698.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	6.06	3.27	9.7	8.04	10.64	9.41	5.65	11.1	14.75	9.04	16.08	6.58
Merged-chr17-33780694-3	chr17	33780605	33780805	+	914.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020581, intron 2 of 6)	intron (NM_020581, intron 2 of 6)	870.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	11.71	12.58	5.13	16.49	11.05	15.99	14.95	13.15	31.27	31.13	17.08	9.08
Merged-chr17-28762088-3	chr17	28761981	28762181	+	914.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7236.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	12.92	10.82	9.7	22.93	27.0	21.64	14.62	18.48	20.46	29.12	37.18	16.92
Merged-chr16-10967128-3	chr16	10967025	10967225	+	914.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	25996.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	18.57	20.37	14.83	25.34	18.82	11.92	13.62	8.05	13.37	11.05	15.58	17.23
Merged-chr19-25672340-3	chr19	25672237	25672437	+	914.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045347)	promoter-TSS (NR_045347)	-74.0	NM_145831	226049.0	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	10.5	10.31	27.95	11.26	7.36	10.98	10.96	13.71	35.8	31.63	59.29	31.01
Merged-chr17-45120004-3	chr17	45119903	45120103	+	914.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357320)	TTS (NM_001357320)	-239118.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	25.84	32.7	41.64	39.01	13.5	5.64	10.3	14.5	12.78	8.54	27.64	8.77
Merged-chr14-46883543-3	chr14	46883441	46883641	+	914.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 1 of 12)	CpG	576.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.06	10.56	23.39	16.89	8.18	10.98	11.96	7.12	13.96	11.55	22.61	9.4
Merged-chr10-67113535-3	chr10	67113442	67113642	+	914.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13716.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	11.71	13.08	5.13	2.41	11.05	20.07	3.32	7.63	28.13	13.56	20.6	10.65
Merged-chr7-84605957-3	chr7	84605861	84606061	+	914.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-19.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	16.56	8.55	10.27	19.31	20.46	16.93	29.9	32.55	11.8	8.54	20.6	10.02
Merged-chr13-43512927-2	chr13	43512835	43513035	+	914.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31962.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	8.08	11.32	19.4	10.86	24.14	36.37	15.28	16.37	4.72	4.52	12.56	3.76
Merged-chr13-56609490-3	chr13	56609386	56609586	+	914.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009369)	promoter-TSS (NM_009369)	-100.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	23.02	14.84	7.99	10.86	22.5	21.64	9.3	21.31	16.92	16.57	15.58	20.68
Merged-chr12-25090723-4	chr12	25090651	25090851	+	914.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	5341.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	14.94	18.36	0.0	14.08	7.77	15.05	7.64	1.4	9.05	5.52	3.01	9.08
Merged-chr5-72818738-3	chr5	72818640	72818840	+	914.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	49708.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	18.57	12.07	15.97	18.1	21.68	13.48	16.61	21.36	12.98	10.54	11.56	20.05
Merged-chr8-105172182-3	chr8	105172062	105172262	+	914.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161456, intron 2 of 4)	intron (NM_001161456, intron 2 of 4)	1488.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	29.07	16.85	23.39	28.96	17.18	12.54	22.92	28.43	21.44	15.06	16.58	20.05
Merged-chr15-59003867-3	chr15	59003772	59003972	+	914.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70062.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	13.73	7.04	2.85	10.46	9.82	16.31	12.62	25.51	16.72	16.07	9.55	6.58
Merged-chr9-22342997-3	chr9	22342974	22343174	+	914.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028390, intron 20 of 23)	L1M4|LINE|L1	-12384.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	11.71	4.02	17.11	8.45	14.32	15.99	23.92	23.41	13.57	7.53	15.07	15.35
Merged-chr16-4079584-3	chr16	4079551	4079751	+	914.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1841.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	12.92	14.09	6.28	10.46	8.18	14.42	6.31	10.96	9.83	16.57	12.06	10.34
Merged-chr13-112003292-2	chr13	112003178	112003378	+	914.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135342.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.04	3.77	0.0	0.4	13.91	23.83	9.63	7.91	14.55	12.55	4.02	4.7
Merged-chr9-124146510-2	chr9	124146403	124146603	+	914.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	24960.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.85	6.04	7.99	3.22	9.0	13.48	5.65	15.0	19.67	28.62	15.07	17.86
Merged-chr7-112238024-2	chr7	112237934	112238134	+	914.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	12198.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	18.98	12.58	13.12	14.88	22.09	15.68	8.97	12.42	1.57	2.01	0.0	1.88
Merged-chrX-75104223-3	chrX	75104151	75104351	+	914.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359413, intron 10 of 15)	intron (NM_001359413, intron 10 of 15)	8397.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	5.25	10.06	18.83	21.72	15.55	9.72	15.61	11.69	19.87	19.58	17.59	8.46
Merged-chr12-72462038-3	chr12	72461959	72462159	+	914.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030070, intron 10 of 24)	intron (NM_030070, intron 10 of 24)	19810.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	13.73	10.06	4.56	16.89	20.46	14.42	7.97	18.64	17.9	23.6	20.1	21.62
Merged-chr8-85082268-3	chr8	85082163	85082363	+	914.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001493)	TTS (NM_001001493)	-1006.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	41.19	27.17	42.21	24.94	20.86	12.54	7.64	12.5	16.13	10.54	10.05	7.52
Merged-chr4-59164173-3	chr4	59164075	59164275	+	914.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	12.52	13.83	19.97	14.08	18.41	28.54	22.26	36.22	35.6	11.55	37.69	18.17
Merged-chr7-140955451-3	chr7	140955365	140955565	+	914.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030694, intron 1 of 1)	intron (NM_030694, intron 1 of 1)	496.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	11.71	15.34	14.26	8.85	13.09	22.58	9.3	5.75	20.26	16.07	28.14	10.34
Merged-chr5-43180239-1	chr5	43180139	43180339	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-53224.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.63	1.01	12.55	1.61	8.18	4.7	5.98	8.44	5.9	2.01	12.56	2.82
Merged-chr9-105053378-3	chr9	105053274	105053474	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053159, exon 1 of 10)	5' UTR (NM_053159, exon 1 of 10)	106.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	22.21	17.36	12.55	14.48	9.0	18.5	17.27	14.72	18.88	18.58	19.6	22.56
Merged-chr9-31168900-2	chr9	31168800	31169000	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001102456, exon 6 of 17)	exon (NM_001102456, exon 6 of 17)	-37101.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	8.08	12.32	19.97	17.29	20.46	15.05	26.57	48.7	5.9	7.53	3.52	5.95
Merged-chr9-31029820-2	chr9	31029677	31029877	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-867.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	7.27	6.04	7.42	10.05	11.05	4.7	7.31	9.9	9.64	12.55	13.06	1.88
Merged-chr15-88248333-1	chr15	88248233	88248433	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66541.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	1.21	4.78	9.7	12.47	11.05	9.41	18.27	15.5	0.79	1.0	1.0	2.19
Merged-chr8-39318921-1	chr8	39318821	39319021	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	Lx6|LINE|L1	20941.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.63	2.52	0.57	3.22	2.86	2.2	9.97	1.57	0.98	0.0	0.5	2.19
Merged-chr15-28025221-3	chr15	28025125	28025325	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	CpG	623.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	13.33	16.35	9.7	12.47	25.36	13.48	14.95	17.16	15.14	19.08	14.07	12.84
Merged-chr10-122820987-1	chr10	122820887	122821087	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	141672.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.21	0.5	4.56	1.61	4.09	0.63	5.98	9.73	1.57	3.01	1.0	0.0
Merged-chr18-61384729-1	chr18	61384629	61384829	+	914.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	L1MB3|LINE|L1	13171.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	10.09	4.02	1.14	0.4	4.5	11.29	2.66	2.52	17.7	10.04	5.02	4.39
Merged-chr9-57644591-2	chr9	57644529	57644729	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1024.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.65	3.27	14.83	3.22	3.27	4.7	14.95	10.21	4.92	4.02	8.04	15.98
Merged-chr12-109507878-3	chr12	109507759	109507959	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33137.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	14.13	5.03	9.13	12.07	22.91	24.15	22.92	24.84	27.93	33.14	39.19	23.18
Merged-chr12-55774529-2	chr12	55774437	55774637	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003719, intron 9 of 39)	Lx7|LINE|L1	46979.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	3.63	3.52	15.97	10.05	9.0	3.76	3.99	12.81	8.65	8.03	21.1	10.96
Merged-chr13-34229077-3	chr13	34228984	34229184	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66120.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	25.44	15.09	19.4	16.89	20.86	19.76	17.94	23.3	9.24	20.08	19.09	9.71
Merged-chr4-55350562-1	chr4	55350462	55350662	+	914.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	CpG	520.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	9.29	13.08	17.11	21.32	17.18	21.32	14.62	19.04	20.85	15.57	21.61	22.87
Merged-chr4-48124509-1	chr4	48124409	48124609	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	-410.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	4.85	5.53	5.7	12.87	6.14	12.86	11.29	8.83	11.01	7.03	13.06	6.58
Merged-chr7-97741220-2	chr7	97741120	97741320	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2973.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	7.67	15.09	2.85	4.02	11.45	12.23	11.29	15.76	13.77	13.05	5.53	9.4
Merged-chr12-59579866-1	chr12	59579766	59579966	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-360383.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	7.27	3.02	4.56	11.26	4.09	10.35	13.62	12.25	2.36	0.5	6.03	0.31
Merged-chr3-121545669-3	chr3	121545573	121545773	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13329.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	10.5	7.55	20.54	16.09	22.5	24.46	14.62	34.21	30.09	22.59	35.68	19.42
Merged-chr3-104639023-1	chr3	104638923	104639123	+	914.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009196, intron 1 of 4)	CpG	359.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	10.09	17.1	9.13	14.08	13.09	11.6	17.94	14.05	11.8	9.04	11.05	9.71
Merged-chr10-28516261-1	chr10	28516161	28516361	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-152099.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	5.65	2.52	3.42	8.45	2.45	11.6	7.64	11.52	2.56	1.51	8.04	2.51
Merged-chr15-80707193-2	chr15	80707097	80707297	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4116.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	7.27	8.05	10.84	5.63	5.73	10.35	2.66	10.71	17.11	9.04	13.57	4.07
Merged-chr10-43757316-3	chr10	43757209	43757409	+	913.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	11151.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	8.48	10.56	11.41	16.89	7.36	11.92	8.3	17.78	14.55	4.52	20.1	10.65
Merged-chr5-138686085-2	chr5	138685974	138686174	+	913.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63215.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	12.52	7.55	7.99	1.61	11.45	23.52	8.64	3.93	33.63	38.16	19.6	21.93
Merged-chr3-41618583-3	chr3	41618481	41618681	+	913.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53701.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	10.5	8.55	15.97	22.12	24.14	19.76	27.24	43.79	19.67	13.05	30.15	21.62
Merged-chr10-91210200-3	chr10	91210075	91210275	+	913.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151510, intron 3 of 3)	MTD|LTR|ERVL-MaLR	10444.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	10.5	11.32	10.84	9.65	18.0	14.42	14.62	19.99	23.8	12.05	25.63	6.89
Merged-chr3-88664283-3	chr3	88664189	88664389	+	913.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-11147.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	14.94	11.57	10.27	4.02	43.77	70.24	31.56	14.92	12.19	5.52	17.59	7.21
Merged-chr1-159232981-4	chr1	159232910	159233110	+	913.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	810.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	2.42	6.04	3.99	8.85	8.18	8.78	10.63	10.68	18.88	13.05	13.57	10.65
Merged-chr8-85500684-2	chr8	85500592	85500792	+	913.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	8075.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.81	0.5	0.0	4.02	11.45	11.6	6.64	12.2	18.29	15.57	12.56	14.1
Merged-chr8-108749205-2	chr8	108749109	108749309	+	913.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34565.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	14.54	7.04	7.99	15.69	13.09	14.11	15.61	14.92	6.88	2.01	4.52	2.19
Merged-chr15-6574819-3	chr15	6574705	6574905	+	913.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5042.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	12.92	7.29	25.67	8.85	40.5	49.54	40.86	35.02	25.57	27.62	36.68	16.92
Merged-chr16-30502650-3	chr16	30502490	30502690	+	913.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47988.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	13.73	7.29	15.97	2.82	17.18	22.58	10.3	14.05	16.72	14.06	11.56	9.71
Merged-chr4-150117540-1	chr4	150117440	150117640	+	913.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1804.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.81	0.5	0.0	0.8	0.0	0.63	0.33	0.56	38.75	12.05	32.16	25.37
Merged-chr9-90253738-3	chr9	90253633	90253833	+	913.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	17036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	12.52	13.83	7.99	23.73	20.46	12.86	14.28	32.55	26.16	8.03	13.57	12.84
Merged-chr14-76216628-3	chr14	76216535	76216735	+	913.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34827.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	23.02	8.55	15.4	11.26	19.23	21.95	13.95	14.89	26.95	18.58	20.1	9.08
Merged-chrX-94542147-3	chrX	94542037	94542237	+	913.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019791)	promoter-TSS (NM_019791)	-63.0	NM_019791	94275.0	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	11.31	10.56	5.7	16.89	39.27	27.91	18.6	38.83	16.33	19.58	16.08	2.82
Merged-chr1-156534128-3	chr1	156534001	156534201	+	913.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24686.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	11.31	12.32	23.96	13.67	20.46	13.17	8.97	18.25	11.41	7.53	4.52	5.33
Merged-chr10-62430636-3	chr10	62430541	62430741	+	913.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8184.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	10.5	14.59	19.4	12.47	18.82	12.54	10.96	18.42	20.06	20.59	33.67	17.54
Merged-chr17-5493953-3	chr17	5493839	5494039	+	913.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1339.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	16.15	7.55	35.94	27.35	20.05	14.11	31.22	37.09	23.8	10.04	35.17	23.81
Merged-chr8-106039774-3	chr8	106039690	106039890	+	913.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301176, intron 6 of 14)	intron (NM_001301176, intron 6 of 14)	-19813.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	15.34	21.63	11.41	9.65	14.32	21.64	9.63	16.51	13.18	7.03	25.63	15.35
Merged-chr19-47900722-2	chr19	47900630	47900830	+	913.7333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	18569.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	1.21	1.76	5.13	6.84	9.0	9.09	15.94	17.05	14.36	16.57	24.62	4.7
Merged-chr10-80033339-3	chr10	80033230	80033430	+	913.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	6329.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	19.79	18.11	13.69	19.71	49.91	48.6	39.53	57.36	40.71	25.11	15.07	17.86
Merged-chr16-23988041-3	chr16	23987916	23988116	+	913.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	CpG	836.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	12.92	18.11	22.25	9.65	11.86	12.23	10.3	5.86	21.05	20.59	11.56	15.04
Merged-chr17-83668130-3	chr17	83668044	83668244	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-36249.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	12.92	8.55	20.54	10.46	18.82	15.99	8.97	8.66	14.75	15.57	18.59	12.84
Merged-chr11-72779562-3	chr11	72779462	72779662	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024926, intron 3 of 3)	intron (NM_001024926, intron 3 of 3)	16277.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	28.27	21.63	21.11	24.94	20.86	23.52	12.62	18.17	9.05	14.06	41.71	7.83
Merged-chr1-128044365-3	chr1	128044276	128044476	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 3 of 20)	intron (NM_001285945, intron 3 of 20)	58095.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	17.77	5.03	11.41	13.27	9.82	20.38	13.95	16.71	14.55	22.09	28.14	14.72
Merged-chr1-120055652-3	chr1	120055565	120055765	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 11 of 13)	intron (NM_001012322, intron 11 of 13)	18115.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.85	5.53	10.84	14.08	12.27	12.23	13.62	17.02	14.16	8.54	19.09	22.87
Merged-chr19-47216936-2	chr19	47216842	47217042	+	913.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021360, intron 1 of 5)	ID_B1|SINE|B4	-11901.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	14.54	8.3	17.11	12.07	16.77	12.23	15.94	17.44	2.16	0.0	3.01	3.13
Merged-chr13-21935514-2	chr13	21935411	21935611	+	913.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-9583.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	22.61	12.58	7.99	22.12	14.73	12.86	11.63	7.12	13.96	5.02	4.52	3.13
Merged-chr15-53416455-3	chr15	53416338	53416538	+	913.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-70255.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	24.63	14.09	25.67	10.86	24.55	11.6	10.63	20.61	23.01	14.56	21.1	9.4
Merged-chr11-97309530-3	chr11	97309418	97309618	+	913.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6198.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	21.8	5.79	22.25	17.7	46.64	40.76	46.5	36.93	14.75	17.57	13.06	16.6
Merged-chr13-28824178-2	chr13	28824078	28824278	+	913.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	61244.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	12.11	9.31	17.68	9.65	16.36	15.05	13.62	19.6	7.08	1.51	10.05	1.57
Merged-chr3-41405021-3	chr3	41404918	41405118	+	913.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88181.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	20.19	12.32	15.4	17.7	20.46	10.03	13.62	27.22	13.96	14.56	16.08	7.83
Merged-chr9-118762235-3	chr9	118762135	118762335	+	913.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	50543.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.54	10.82	6.85	4.83	18.82	11.6	5.98	9.59	20.06	14.56	12.56	14.1
Merged-chr6-148609150-3	chr6	148609039	148609239	+	913.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	5170.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	14.54	4.53	7.99	10.05	12.27	17.25	15.28	13.57	16.33	11.55	25.63	8.14
Merged-chr17-5025570-3	chr17	5025481	5025681	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	30507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	19.79	14.09	16.54	34.19	3.68	3.14	7.64	9.17	15.34	16.57	11.05	7.52
Merged-chr3-146158205-3	chr3	146158099	146158299	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	8025.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	14.94	13.08	12.55	10.86	16.77	13.48	12.95	15.87	23.01	20.08	25.12	12.53
Merged-chr11-115653692-3	chr11	115653583	115653783	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-25388.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	27.05	6.29	22.82	9.25	19.64	21.64	20.93	32.66	15.34	5.02	19.6	12.22
Merged-chr19-6974903-3	chr19	6974804	6975004	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-144.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	9.29	21.38	7.99	21.32	16.77	18.81	8.97	12.64	21.83	12.55	25.63	14.72
Merged-chr15-76879180-3	chr15	76879081	76879281	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358816)	promoter-TSS (NM_001358816)	-72.0	NM_145916	223669.0	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	37.96	10.56	18.25	13.27	40.91	36.06	22.59	34.04	18.49	21.09	16.58	9.08
Merged-chr10-37210455-3	chr10	37210340	37210540	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-71514.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	10.09	3.02	23.96	28.56	24.55	21.01	27.9	20.83	20.46	18.08	30.15	18.48
Merged-chr17-26955765-1	chr17	26955665	26955865	+	913.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281491, intron 7 of 18)	intron (NM_001281491, intron 7 of 18)	-7646.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	1.62	4.53	4.56	3.62	10.64	6.9	4.65	9.56	6.29	7.03	4.52	5.64
Merged-chr11-113544375-1	chr11	113544275	113544475	+	913.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	21440.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	6.46	1.76	2.85	3.22	7.77	6.27	7.97	10.15	4.33	5.52	3.52	5.95
Merged-chr15-66969793-3	chr15	66969675	66969875	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-134.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	15.34	9.81	15.97	10.46	24.55	21.64	26.91	32.3	14.55	18.08	21.61	11.28
Merged-chr4-139203548-3	chr4	139203456	139203656	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	ID_B1|SINE|B4	9445.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.25	10.56	11.98	8.04	11.86	14.11	3.32	11.61	24.19	20.59	17.59	12.22
Merged-chr15-39608897-4	chr15	39608767	39608967	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-50644.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.23	7.8	7.42	4.02	11.05	14.11	11.96	12.9	12.98	13.56	20.1	10.34
Merged-chr19-33119112-2	chr19	33119007	33119207	+	913.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B1|LTR|ERVL	-38005.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	10.09	5.03	7.99	7.64	12.27	5.64	13.29	9.87	13.77	6.03	15.07	7.21
Merged-chr8-68206922-3	chr8	68206828	68207028	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69600.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	18.57	11.32	17.11	24.13	8.18	10.98	4.32	17.1	32.45	13.56	25.12	22.24
Merged-chrX-41805762-3	chrX	41805649	41805849	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033422, intron 36 of 38)	intron (NM_001033422, intron 36 of 38)	106152.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	14.54	13.08	26.24	23.33	8.59	13.17	11.96	14.07	14.95	15.57	21.1	16.92
Merged-chr9-113932229-3	chr9	113932102	113932302	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1268.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	10.09	5.79	13.12	5.63	11.05	15.05	13.29	19.23	21.83	12.55	24.12	13.47
Merged-chr9-4443099-3	chr9	4443019	4443219	+	913.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113180, intron 14 of 16)	B2_Mm2|SINE|B2	66567.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	11.71	13.58	8.56	18.9	10.64	21.95	7.97	12.14	19.28	12.05	24.62	12.53
Merged-chr19-4138123-3	chr19	4138032	4138232	+	913.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144532, intron 3 of 5)	MTD|LTR|ERVL-MaLR	1477.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	16.15	24.15	21.68	17.29	23.73	26.03	8.97	10.51	14.55	12.05	14.57	8.14
Merged-chr3-123329401-3	chr3	123329301	123329501	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 9 of 22)	intron (NM_027135, intron 9 of 22)	56589.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	18.17	8.55	12.55	18.9	26.18	17.25	26.57	24.0	68.05	69.29	65.83	60.15
Merged-chr6-13875165-3	chr6	13875082	13875282	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045995, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	3613.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	22.61	14.84	26.81	10.05	13.91	17.25	6.31	15.28	22.03	22.59	27.13	10.02
Merged-chr14-17714573-3	chr14	17714418	17714618	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	53558.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	10.09	5.28	18.25	9.65	14.32	21.64	14.28	22.01	17.7	5.02	10.55	8.14
Merged-chr7-45082680-3	chr7	45082543	45082743	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026555)	TTS (NM_026555)	9570.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	15.75	8.55	21.11	11.26	22.91	35.75	36.21	37.23	13.37	13.56	18.09	7.83
Merged-chr19-7418068-3	chr19	7417982	7418182	+	913.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175381, intron 1 of 4)	CpG	457.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	20.19	23.14	15.97	14.88	13.91	21.32	7.97	11.27	16.13	12.05	13.57	9.71
Merged-chr4-59040813-2	chr4	59040734	59040934	+	913.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025277, intron 2 of 2)	intron (NM_025277, intron 2 of 2)	5678.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	12.11	15.34	13.12	17.29	22.09	14.42	21.59	9.87	1.57	1.51	1.0	0.0
Merged-chr15-77805868-3	chr15	77805848	77806048	+	913.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	36227.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	14.13	9.56	20.54	10.46	20.46	12.86	7.97	9.84	20.85	21.59	15.07	9.08
Merged-chr10-111108879-3	chr10	111108734	111108934	+	913.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55968.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	7.67	12.32	8.56	10.05	10.64	7.84	10.96	10.57	13.57	13.05	16.08	8.46
Merged-chr9-40415218-3	chr9	40415111	40415311	+	913.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-38794.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.67	11.57	11.98	12.87	11.86	12.54	5.65	10.37	40.52	51.21	45.73	35.4
Merged-chr15-27466500-4	chr15	27466378	27466578	+	913.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020332)	promoter-TSS (NM_020332)	-199.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	19.38	10.82	4.56	17.29	37.23	31.67	18.93	39.08	29.5	24.6	45.22	11.28
Merged-chr15-57980886-3	chr15	57980785	57980985	+	913.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5018.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	12.52	13.33	19.4	10.05	13.5	38.88	15.94	25.15	25.18	13.05	26.63	17.86
Merged-chr10-95357929-3	chr10	95357838	95358038	+	913.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045337, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	21662.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	5.25	14.84	11.98	12.47	12.68	15.05	3.32	10.99	23.8	20.59	18.09	6.89
Merged-chr4-43372365-1	chr4	43372265	43372465	+	913.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 27 of 28)	intron (NM_177195, intron 27 of 28)	-9617.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	4.85	6.04	5.7	10.05	15.55	2.2	6.31	15.48	0.79	0.5	1.0	0.63
Merged-chr6-31224667-1	chr6	31224567	31224767	+	913.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040260, intron 1 of 5)	L2c|LINE|L2	4316.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	2.02	4.28	10.27	3.62	10.23	11.92	2.99	16.46	7.08	13.05	10.05	5.33
Merged-chr19-41367368-3	chr19	41367262	41367462	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	17708.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	10.9	8.8	15.97	8.85	25.77	34.49	13.29	16.12	15.74	14.06	15.58	4.39
Merged-chr18-65070776-3	chr18	65070685	65070885	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47258.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.85	8.55	34.23	14.88	14.32	18.81	12.62	25.51	29.5	19.08	20.6	15.66
Merged-chr5-93266342-3	chr5	93266232	93266432	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1241.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	9.69	13.08	13.69	4.83	12.68	19.44	3.32	7.4	22.42	20.59	8.54	4.07
Merged-chr2-22795223-3	chr2	22795135	22795335	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	20908.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	7.67	13.08	12.55	10.86	8.59	16.31	9.63	12.84	15.34	13.56	19.6	3.76
Merged-chr8-33673835-3	chr8	33673740	33673940	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20602.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	1.62	4.78	22.25	10.05	21.27	29.48	29.23	31.23	129.62	86.86	113.06	87.4
Merged-chr10-96263847-1	chr10	96263747	96263947	+	913.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37640.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.85	5.53	9.13	4.42	9.82	12.23	2.99	8.89	6.29	2.01	9.04	5.33
Merged-chr14-40931326-3	chr14	40931231	40931431	+	913.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	16878.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	18.98	7.55	24.53	16.09	20.05	8.15	17.27	25.04	18.88	7.03	27.64	12.84
Merged-chr14-63437406-5	chr14	63437308	63437508	+	913.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	1014.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	14.13	11.82	9.7	5.23	6.95	16.62	7.31	6.17	5.11	9.04	6.53	6.58
Merged-chr4-134917229-3	chr4	134917134	134917334	+	913.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2318.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	21.0	10.56	17.11	11.66	12.27	15.05	11.96	20.75	18.1	5.02	12.06	15.66
Merged-chr2-103655982-5	chr2	103655863	103656063	+	913.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89653.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	12.52	14.09	12.55	11.66	9.82	14.74	12.62	12.03	5.11	6.53	7.54	5.95
Merged-chr2-166682607-2	chr2	166682496	166682696	+	913.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	31236.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.86	2.77	12.55	9.65	15.14	8.47	12.62	15.36	13.37	7.03	13.06	9.08
Merged-chrX-93632149-4	chrX	93631939	93632139	+	913.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008892, intron 1 of 36)	CpG	116.0	NM_008892	18968.0	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	10.5	10.82	11.41	7.64	19.64	6.27	9.3	11.94	22.62	31.63	23.62	16.92
Merged-chr5-150233596-2	chr5	150233478	150233678	+	913.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26352.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	1.62	2.26	3.99	10.46	5.32	7.84	8.97	8.69	19.47	16.57	24.62	7.21
Merged-chr19-24971499-3	chr19	24971402	24971602	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9886.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	8.08	11.32	3.99	10.05	33.14	29.79	20.93	33.62	24.0	33.14	22.11	9.71
Merged-chr2-130293699-3	chr2	130293608	130293808	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2231.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	18.17	9.06	16.54	4.42	25.36	27.28	17.27	28.54	11.21	12.55	15.58	13.78
Merged-chrX-101452617-3	chrX	101452498	101452698	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013712, intron 9 of 10)	intron (NM_013712, intron 9 of 10)	3489.0	NM_013712	26549.0	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	10.9	11.82	18.83	5.63	9.0	4.39	6.31	12.03	13.96	3.01	15.58	15.98
Merged-chr9-22308957-3	chr9	22308849	22309049	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1311.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	12.11	9.31	25.1	14.88	23.73	23.2	15.94	26.78	22.62	24.1	29.14	26.31
Merged-chr11-120352876-3	chr11	120352837	120353037	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4259.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	7.67	14.59	2.28	7.64	13.09	12.86	8.97	7.82	13.18	21.09	8.54	18.17
Merged-chr9-57561953-3	chr9	57561841	57562041	+	913.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	997.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	25.84	13.33	11.41	22.12	14.73	16.93	10.3	20.24	18.69	33.14	16.08	19.42
Merged-chr10-121376052-3	chr10	121375950	121376150	+	913.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10960.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	19.38	14.84	11.98	14.08	25.77	21.95	10.63	36.81	31.86	13.56	33.16	13.47
Merged-chr15-25412479-3	chr15	25412377	25412577	+	913.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	CpG	1287.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	14.94	8.3	13.69	13.27	16.36	6.27	17.61	21.87	11.01	9.54	24.12	19.42
Merged-chr3-89436943-3	chr3	89436788	89436988	+	913.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	184.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	15.75	11.57	10.84	3.62	9.82	16.31	18.93	10.32	14.16	12.55	11.05	8.77
Merged-chr12-78206261-4	chr12	78206139	78206339	+	913.1785890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20416.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	10.9	13.33	25.1	10.86	16.36	11.92	13.29	16.01	16.92	18.08	20.1	9.4
Merged-chr8-126885738-3	chr8	126885646	126885846	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36726.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	14.54	7.55	12.55	10.46	15.96	21.01	9.63	12.45	27.54	29.62	36.18	20.05
Merged-chr1-37318121-2	chr1	37318018	37318218	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	18280.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	18.98	10.06	26.24	10.86	10.23	13.17	10.3	18.56	5.11	7.03	6.53	3.76
Merged-chr6-72394584-3	chr6	72394476	72394676	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3909.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	12.11	20.12	14.83	8.04	12.27	14.11	15.28	9.87	18.1	14.06	21.61	22.24
Merged-chr10-30712679-3	chr10	30712580	30712780	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-56813.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	13.33	13.33	27.95	25.34	18.0	11.6	13.62	23.36	18.88	11.55	36.18	13.47
Merged-chr9-61267419-3	chr9	61267310	61267510	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	26399.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	22.61	4.53	13.12	18.1	12.27	22.89	11.96	21.45	18.49	12.55	22.61	10.65
Merged-chr11-68475443-3	chr11	68475347	68475547	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177320, exon 3 of 19)	exon (NM_177320, exon 3 of 19)	-27572.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	10.5	8.3	7.99	4.42	15.96	13.48	9.3	7.04	19.47	8.54	14.07	3.76
Merged-chr5-53594540-1	chr5	53594440	53594640	+	913.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	4054.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.46	7.55	5.7	6.03	11.05	7.53	5.98	3.53	18.1	22.09	18.59	8.77
Merged-chr8-86862455-5	chr8	86862356	86862556	+	913.1199949999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	22802.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.63	12.58	13.69	10.86	4.91	11.92	9.63	6.84	7.67	6.03	6.03	8.14
Merged-chr12-79646778-3	chr12	79646687	79646887	+	913.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	277946.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	31.9	39.24	26.81	11.26	24.96	31.67	34.21	11.13	25.18	35.15	11.56	17.54
Merged-chr5-29574470-3	chr5	29574375	29574575	+	913.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133907, intron 1 of 22)	RLTR45|LTR|ERVK	5233.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	8.08	17.86	19.4	22.12	25.36	21.01	17.94	12.53	13.77	8.54	12.56	8.46
Merged-chr11-116195461-3	chr11	116195384	116195584	+	913.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-3371.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	13.33	14.84	14.26	10.86	21.68	16.62	7.31	23.75	17.51	18.58	12.56	7.52
Merged-chr11-81950290-3	chr11	81950177	81950377	+	913.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	18119.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	23.42	24.4	26.81	16.49	1.64	7.84	6.31	8.16	12.98	2.51	15.07	11.28
Merged-chr19-46699361-3	chr19	46699255	46699455	+	913.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	-8088.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	16.56	14.84	5.13	14.08	27.41	25.09	13.29	20.97	15.54	20.59	9.04	11.59
Merged-chr15-76350632-3	chr15	76350517	76350717	+	913.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	493.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	10.5	23.39	24.53	25.34	18.0	32.3	24.25	15.2	21.44	19.58	11.56	20.36
Merged-chr7-96977418-3	chr7	96977331	96977531	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	25904.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	22.21	8.3	19.97	12.47	15.96	9.41	6.31	17.5	34.81	20.59	30.65	21.93
Merged-chr15-72838415-3	chr15	72838303	72838503	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-28079.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	9.29	8.3	21.11	8.85	10.23	12.54	13.95	12.2	24.19	14.06	30.15	12.22
Merged-chr18-75171459-3	chr18	75171378	75171578	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	125839.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	12.11	21.13	47.35	44.24	16.77	16.93	33.88	41.3	11.01	9.04	17.59	15.66
Merged-chr7-89337991-3	chr7	89337883	89338083	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	804.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	7.67	12.58	10.84	7.64	15.96	15.68	10.3	11.92	17.51	23.1	19.09	8.46
Merged-chr3-60538723-3	chr3	60538622	60538822	+	913.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	37543.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	20.19	29.18	27.38	10.86	12.27	11.6	7.64	10.18	27.54	33.14	25.63	14.72
Merged-chr2-69077437-3	chr2	69077326	69077526	+	913.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-58374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	15.75	12.83	18.83	14.88	15.14	9.72	14.28	20.52	14.55	13.56	22.61	14.72
Merged-chr17-48322523-3	chr17	48322405	48322605	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177083, intron 5 of 5)	intron (NM_177083, intron 5 of 5)	6343.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	8.48	9.56	13.69	3.62	16.36	15.99	13.29	17.19	11.21	15.57	10.05	9.4
Merged-chrX-13469869-1	chrX	13469769	13469969	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	intron (NM_173415, intron 2 of 2)	2197.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	4.85	2.26	3.99	2.01	6.95	5.96	3.32	10.37	9.05	4.52	8.54	2.19
Merged-chr9-13584674-1	chr9	13584574	13584774	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.42	5.03	8.56	1.61	9.0	15.99	4.98	14.02	3.74	8.54	3.52	3.76
Merged-chr16-75894416-1	chr16	75894316	75894516	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	14850.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	8.08	11.82	30.8	22.52	1.23	1.88	4.65	7.18	1.77	1.51	3.52	2.19
Merged-chr16-43106442-1	chr16	43106342	43106542	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	MLT2B4|LTR|ERVL	-140842.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	7.27	1.51	7.99	6.84	11.45	3.14	7.64	8.72	5.9	1.0	6.53	8.77
Merged-chrX-121326820-2	chrX	121326713	121326913	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-1013587.0	NM_001281531	624957.0		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	5.65	10.82	23.96	7.64	34.36	34.81	35.87	34.57	0.0	0.0	0.0	0.63
Merged-chr14-105897354-3	chr14	105897273	105897473	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-554.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	39.98	35.21	37.65	47.46	35.59	20.07	19.93	38.58	13.57	12.55	12.56	6.89
Merged-chr2-79628810-1	chr2	79628710	79628910	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6615.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	6.06	4.53	23.39	8.45	9.82	19.44	3.32	8.92	0.59	1.0	0.0	1.57
Merged-chr10-95148812-3	chr10	95148711	95148911	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-2986.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	16.15	8.55	11.98	7.24	31.09	19.13	15.61	21.39	23.21	16.57	18.59	5.95
Merged-chr7-28527816-1	chr7	28527716	28527916	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4980.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	1.62	3.02	2.85	0.0	5.73	9.09	2.66	8.21	5.9	1.51	1.51	2.82
Merged-chr12-3345331-1	chr12	3345231	3345431	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-19801.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.63	5.79	6.28	0.0	6.55	11.6	10.96	3.64	4.92	7.03	6.53	5.64
Merged-chrX-13478550-1	chrX	13478450	13478650	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	10878.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	0.81	1.01	1.71	2.01	9.41	1.25	9.63	14.97	1.38	2.01	9.04	0.31
Merged-chr18-62037758-3	chr18	62037657	62037857	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84682.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	13.33	7.29	13.12	10.86	26.59	31.67	18.93	25.09	26.95	14.56	24.12	20.05
Merged-chr17-45591878-1	chr17	45591778	45591978	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	515.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	1.21	2.77	0.57	4.83	2.86	3.76	4.98	7.65	5.51	5.02	7.03	3.13
Merged-chr4-55645091-2	chr4	55644980	55645180	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-112605.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.65	2.77	5.13	15.28	6.95	17.56	14.95	19.01	11.6	10.04	30.15	20.99
Merged-chr11-80148301-3	chr11	80148053	80148253	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6000.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	2.42	6.79	1.71	0.8	2.45	3.45	1.33	1.43	1.38	2.01	0.5	1.25
Merged-chr12-79002654-1	chr12	79002554	79002754	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178745, intron 1 of 2)	Lx9|LINE|L1	4623.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	1.62	3.02	4.56	4.83	4.5	8.78	1.99	9.03	4.52	2.01	8.04	5.64
Merged-chr2-166301413-1	chr2	166301313	166301513	+	913.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27505.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	7.27	1.01	3.42	1.61	2.05	1.88	5.65	2.55	14.95	22.59	33.16	11.28
Merged-chr9-90303345-3	chr9	90303241	90303441	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-32572.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	8.48	10.06	12.55	10.46	15.96	23.52	12.95	16.09	18.49	27.62	23.62	13.47
Merged-chr3-78958966-2	chr3	78958866	78959066	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	185921.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.25	4.02	3.42	9.65	12.68	11.6	5.65	3.9	15.54	14.06	7.54	2.19
Merged-chr11-120231487-3	chr11	120231387	120231587	+	912.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151480, intron 1 of 1)	CpG	130.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	17.36	23.39	11.98	20.51	9.41	27.91	9.63	7.15	27.54	38.16	18.09	20.68
Merged-chr10-59964850-4	chr10	59964750	59964950	+	912.964294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13080.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.44	8.55	2.28	4.42	11.05	2.51	9.3	4.85	19.47	19.58	8.54	5.64
Merged-chr5-30622504-3	chr5	30622421	30622621	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010608, exon 2 of 2)	exon (NM_010608, exon 2 of 2)	-25415.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	25.04	12.07	11.98	18.9	5.73	17.56	13.62	23.92	18.49	21.59	14.07	28.19
Merged-chr5-30775219-3	chr5	30775135	30775335	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023047, intron 2 of 12)	(CCCCAG)n|Simple_repeat|Simple_repeat	-39406.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	15.34	12.07	8.56	8.85	15.55	23.52	6.64	12.0	28.13	23.1	17.08	15.66
Merged-chr13-52533858-3	chr13	52533752	52533952	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3016.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	13.73	16.6	15.4	27.35	16.77	23.83	7.31	20.05	12.59	16.07	19.09	9.4
Merged-chr15-11407566-3	chr15	11407458	11407658	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7900.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	18.98	14.34	19.4	20.11	7.36	10.03	9.63	16.21	25.57	15.57	21.61	13.16
Merged-chr5-3301304-3	chr5	3301211	3301411	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42582.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	11.71	8.3	13.12	15.69	45.0	34.18	26.91	40.43	32.45	22.09	32.16	20.05
Merged-chr17-83563953-3	chr17	83563862	83564062	+	912.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49629.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	9.69	10.31	14.83	9.25	17.18	25.4	18.27	27.56	13.18	25.11	14.57	14.41
Merged-chr9-66158219-3	chr9	66158117	66158317	+	912.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010019)	promoter-TSS (NM_010019)	-9.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	15.75	17.86	22.25	8.85	9.0	15.05	8.3	16.51	19.47	20.08	33.67	11.28
Merged-chr2-34741963-3	chr2	34741852	34742052	+	912.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	13280.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	18.17	15.34	15.4	15.69	12.68	9.72	5.98	9.62	15.93	15.06	7.03	8.46
Merged-chr4-107989140-3	chr4	107989036	107989236	+	912.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146255, intron 2 of 10)	intron (NM_146255, intron 2 of 10)	20802.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	16.56	5.28	10.84	20.11	19.64	24.77	19.27	22.49	15.54	11.05	16.08	15.04
Merged-chr19-41982150-3	chr19	41982078	41982278	+	912.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	CpG	415.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	8.08	17.86	13.69	18.5	10.23	15.05	7.97	5.38	11.8	12.55	14.07	7.21
Merged-chr3-21634999-3	chr3	21634916	21635116	+	912.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57E2|LTR|ERV1	-441636.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	15.75	12.58	19.97	11.66	19.23	15.68	8.97	17.66	25.77	19.08	30.15	12.84
Merged-chr17-35189391-3	chr17	35189317	35189517	+	912.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-977.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	11.71	15.85	27.38	8.45	28.64	21.95	18.6	18.25	24.78	19.58	27.64	20.05
Merged-chrX-48410290-3	chrX	48410177	48410377	+	912.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019680)	TTS (NM_019680)	52855.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	16.96	8.05	27.95	15.28	8.18	17.56	22.59	18.67	23.8	19.08	18.59	11.59
Merged-chr10-28414221-1	chr10	28414121	28414321	+	912.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-254139.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	4.85	3.02	3.42	11.26	9.82	10.98	12.29	23.3	3.93	1.51	7.54	3.13
Merged-chr1-88655337-3	chr1	88655239	88655439	+	912.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46852.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	18.98	8.55	19.4	12.47	15.55	9.72	17.94	16.29	8.85	19.58	17.08	8.77
Merged-chr3-31097254-3	chr3	31097141	31097341	+	912.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	2183.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	14.13	10.31	10.27	8.85	10.64	18.19	13.29	26.38	31.27	29.62	25.63	36.97
Merged-chr10-68472966-3	chr10	68472826	68473026	+	912.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	68949.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	5.65	6.04	10.27	9.25	15.96	25.71	18.27	32.44	12.19	19.08	20.1	8.14
Merged-chr17-57250040-1	chr17	57249940	57250140	+	912.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	589.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	3.63	5.53	3.42	5.23	14.32	13.17	9.97	8.55	8.85	3.51	11.56	6.27
Merged-chr6-50163077-4	chr6	50162921	50163121	+	912.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 5 of 13)	intron (NM_001361248, intron 5 of 13)	52161.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.4	0.5	0.0	2.41	1.64	2.82	1.99	1.77	8.85	11.55	8.04	5.33
Merged-chr15-6029433-3	chr15	6029316	6029516	+	912.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155428, intron 2 of 2)	intron (NR_155428, intron 2 of 2)	15288.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	14.13	9.81	15.97	32.18	29.05	18.5	34.88	41.44	12.0	9.54	23.62	23.49
Merged-chr7-45083228-3	chr7	45083129	45083329	+	912.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026555, exon 7 of 7)	3' UTR (NM_026555, exon 7 of 7)	8984.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	10.5	10.56	7.42	5.63	23.73	15.99	7.97	15.59	24.19	26.61	23.11	15.35
Merged-chr11-75163728-3	chr11	75163589	75163789	+	912.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001098203)	TTS (NM_001098203)	4463.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	15.34	8.55	20.54	15.69	13.91	33.55	33.88	29.3	20.65	21.09	18.59	7.52
Merged-chr5-146757491-3	chr5	146757389	146757589	+	912.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	37467.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	10.09	13.33	7.99	12.47	11.05	13.48	9.63	26.3	30.49	21.59	20.1	16.92
Merged-chr18-17360356-3	chr18	17360272	17360472	+	912.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124890.0	NR_033607	664619.0	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	13.33	18.36	18.25	13.67	34.36	21.01	37.87	50.69	14.75	8.03	14.57	7.83
Merged-chr18-53059266-3	chr18	53059157	53059357	+	912.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117035.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	13.73	8.05	18.83	25.74	9.82	10.35	18.6	21.22	19.67	22.09	47.23	18.48
Merged-chr9-110452714-3	chr9	110452617	110452817	+	912.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 2 of 9)	intron (NM_001360306, intron 2 of 9)	23977.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	10.9	12.83	25.67	16.89	21.27	9.09	11.96	14.33	23.01	12.05	21.1	13.47
Merged-chr10-57637203-3	chr10	57637112	57637312	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5231.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	17.36	10.56	27.38	24.94	24.14	15.68	17.61	28.09	16.52	11.55	15.58	14.72
Merged-chr6-136551117-1	chr6	136551017	136551217	+	912.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32266.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.42	5.28	6.28	3.22	15.55	17.25	4.32	8.19	11.01	4.52	4.02	4.7
Merged-chr6-30114308-1	chr6	30114208	30114408	+	912.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361695, intron 6 of 11)	intron (NM_001361695, intron 6 of 11)	27143.0	NM_001361693	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	3.23	2.01	6.85	2.41	11.05	1.25	8.97	12.79	1.97	9.54	2.01	0.94
Merged-chr18-31804497-1	chr18	31804397	31804597	+	912.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028866, intron 1 of 21)	CpG	440.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	14.94	11.07	2.85	10.46	17.18	24.77	17.94	10.77	15.14	12.05	10.55	14.1
Merged-chr13-9181238-3	chr13	9181129	9181329	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87348.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	22.21	28.67	6.85	10.46	6.95	21.95	18.27	16.91	29.9	23.1	20.6	12.22
Merged-chrY-90807774-1	chrY	90807674	90807874	+	912.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	22332.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	4.44	2.52	0.0	3.22	2.05	1.88	0.0	0.59	23.6	15.06	16.58	14.72
Merged-chr8-121111353-3	chr8	121111257	121111457	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2978.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	10.09	9.56	11.98	12.47	12.27	13.17	7.31	17.36	21.24	11.55	25.63	10.65
Merged-chr4-65565663-3	chr4	65565563	65565763	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-39323.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	16.56	12.83	11.98	9.65	15.96	21.95	15.28	28.07	27.34	12.55	38.69	19.11
Merged-chr4-39611247-2	chr4	39611153	39611353	+	912.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	160960.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	2.42	3.77	1.14	3.62	11.05	2.51	12.95	15.87	16.72	9.04	30.15	10.02
Merged-chr6-83418270-3	chr6	83418157	83418357	+	912.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-17155.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	24.63	10.31	27.95	9.25	29.46	29.16	18.27	27.67	13.37	14.06	17.59	6.27
Merged-chr19-11055846-3	chr19	11055756	11055956	+	912.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-5290.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	24.23	28.17	22.82	16.89	15.14	15.37	5.65	7.15	17.9	22.59	6.53	10.02
Merged-chr12-102646269-3	chr12	102646190	102646390	+	912.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	38730.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	11.31	16.6	12.55	13.27	8.59	15.05	12.62	8.02	6.49	5.52	14.57	5.01
Merged-chr1-155814826-2	chr1	155814725	155814925	+	912.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1926.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	10.5	10.06	16.54	8.85	16.36	17.25	17.27	25.79	0.79	0.0	0.5	0.94
Merged-chr19-47464218-5	chr19	47464017	47464217	+	912.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164717, exon 1 of 14)	exon (NM_001164717, exon 1 of 14)	294.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	18.17	19.62	10.27	14.88	13.91	19.44	7.97	15.2	15.93	9.54	14.07	14.72
Merged-chr3-81037485-3	chr3	81037384	81037584	+	912.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019971, exon 1 of 6)	exon (NM_019971, exon 1 of 6)	1068.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	11.71	11.32	5.13	9.65	12.27	9.09	11.96	9.84	17.7	16.57	15.58	5.64
Merged-chr14-33320325-3	chr14	33320214	33320414	+	912.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	CpG	90710.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	19.79	16.6	10.27	14.48	15.55	10.66	20.26	18.53	11.6	23.1	12.06	13.16
Merged-chr11-98948082-3	chr11	98947980	98948180	+	912.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8369.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	17.36	15.09	13.69	16.49	17.18	9.72	17.27	21.14	18.29	14.06	17.59	19.74
Merged-chr11-34056683-3	chr11	34056565	34056765	+	912.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	9737.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.65	13.83	13.69	9.65	12.68	16.62	16.94	8.58	15.93	13.05	26.13	18.8
Merged-chr2-155563110-3	chr2	155563018	155563218	+	912.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008180)	TTS (NM_008180)	-6188.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	8.48	9.06	8.56	5.23	12.68	26.65	10.63	28.4	24.59	27.11	19.09	13.16
Merged-chr5-134231645-3	chr5	134231544	134231744	+	912.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2019.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	10.9	6.29	15.97	12.87	22.91	19.13	24.91	28.29	15.93	11.05	21.1	9.08
Merged-chr8-108631299-1	chr8	108631199	108631399	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-46622.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.06	5.03	10.27	8.04	8.18	4.39	7.64	9.48	4.92	5.02	17.08	9.4
Merged-chr12-85496976-3	chr12	85496876	85497076	+	912.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23086.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	10.09	13.33	10.84	4.02	16.77	24.46	15.28	11.75	21.44	13.05	26.63	11.9
Merged-chr8-22477378-1	chr8	22477278	22477478	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-499.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	9.29	5.53	5.7	6.03	10.64	6.27	14.95	7.88	13.18	5.52	11.56	12.84
Merged-chr8-40491577-3	chr8	40491476	40491676	+	912.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011135)	TTS (NM_011135)	18903.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	8.08	13.83	19.97	17.29	6.14	26.34	13.95	20.92	10.42	9.04	14.57	8.14
Merged-chr2-21139425-2	chr2	21139324	21139524	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65941.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.81	1.51	0.0	0.0	9.41	15.68	9.63	8.36	25.37	35.65	33.67	16.6
Merged-chr9-63985311-2	chr9	63985210	63985410	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	36749.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	3.63	5.53	10.27	2.41	12.68	22.26	17.27	10.63	12.0	12.55	18.09	5.33
Merged-chr16-95810609-3	chr16	95810512	95810712	+	912.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88101.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.85	5.28	14.83	12.87	23.32	12.86	14.62	12.93	16.13	13.56	17.08	12.53
Merged-chr3-103912928-1	chr3	103912828	103913028	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008979)	TTS (NM_008979)	-1192.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	2.42	2.52	2.85	4.02	6.14	17.56	9.97	10.63	3.15	6.03	5.02	3.45
Merged-chr5-20816027-1	chr5	20815927	20816127	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	66097.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.81	0.5	2.28	3.22	4.91	13.48	5.98	8.33	3.15	5.52	4.52	5.64
Merged-chr7-97361701-3	chr7	97361654	97361854	+	912.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-9863.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	8.08	8.8	2.85	3.22	13.09	9.72	4.32	2.02	8.26	7.03	11.56	4.39
Merged-chr10-40499463-3	chr10	40499382	40499582	+	912.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70880.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	14.54	10.82	10.27	20.91	19.23	22.58	20.59	12.39	16.92	13.56	6.53	12.22
Merged-chr9-5300210-3	chr9	5300115	5300315	+	912.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1698.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	12.92	6.79	19.97	16.89	10.64	12.23	14.62	19.77	24.98	10.54	22.61	13.16
Merged-chr2-52967102-3	chr2	52967021	52967221	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	109253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	9.69	14.09	13.12	12.07	13.09	17.56	13.62	16.35	16.33	9.54	10.05	9.4
Merged-chr14-66848875-3	chr14	66848767	66848967	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	19733.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	8.88	14.34	5.7	15.69	14.73	25.09	10.63	11.44	21.24	15.06	24.62	12.84
Merged-chr7-16951471-3	chr7	16951371	16951571	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6789.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	14.54	11.07	15.97	12.07	21.27	22.26	10.63	21.9	16.92	18.58	21.1	9.4
Merged-chr6-136718943-3	chr6	136718834	136719034	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 18 of 25)	MER44B|DNA|TcMar-Tigger	-57041.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	7.67	17.1	18.25	10.46	9.82	14.11	12.62	20.38	19.28	17.57	21.61	17.54
Merged-chr4-63391460-3	chr4	63391354	63391554	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	6786.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	17.77	8.8	11.98	17.29	39.27	19.13	43.51	37.43	31.08	25.11	24.12	9.71
Merged-chr9-38724218-3	chr9	38724115	38724315	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	5947.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	16.15	10.31	12.55	16.49	18.41	15.05	12.95	23.33	27.34	16.57	21.1	21.93
Merged-chr12-86740216-3	chr12	86740137	86740337	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195767, intron 3 of 14)	B3A|SINE|B2	5868.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	8.88	11.57	7.99	9.25	12.68	14.11	6.98	18.03	24.78	11.05	18.59	15.04
Merged-chr17-44614183-2	chr17	44614075	44614275	+	912.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271627, intron 6 of 7)	intron (NM_001271627, intron 6 of 7)	122001.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	11.31	12.32	17.68	16.09	6.14	13.48	5.65	15.28	2.75	9.04	18.59	5.95
Merged-chr6-81443392-3	chr6	81443319	81443519	+	912.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	452244.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	7.67	13.33	16.54	11.26	4.5	9.09	11.96	15.08	26.55	23.1	31.15	19.74
Merged-chr15-83122205-3	chr15	83122157	83122357	+	912.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358061, intron 1 of 3)	intron (NM_001358061, intron 1 of 3)	544.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	14.54	14.59	5.7	8.85	9.41	21.95	9.63	12.25	21.24	19.58	20.1	11.9
Merged-chr17-84191096-3	chr17	84190979	84191179	+	912.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183021, exon 38 of 38)	3' UTR (NM_183021, exon 38 of 38)	-3132.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	12.11	12.58	4.56	8.85	17.59	13.8	12.95	16.71	20.06	17.57	17.08	11.59
Merged-chr2-155585634-3	chr2	155585523	155585723	+	912.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291111, intron 1 of 11)	MIR|SINE|MIR	7187.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	12.11	8.3	12.55	8.04	12.27	26.97	16.28	19.04	23.6	15.06	25.12	15.66
Merged-chr1-85961103-3	chr1	85960995	85961195	+	912.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033290)	promoter-TSS (NM_001033290)	-40.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	6.86	12.07	6.85	10.86	8.59	19.44	9.63	19.09	18.29	18.58	16.08	11.9
Merged-chr2-128387503-2	chr2	128387405	128387605	+	912.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	41846.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	6.06	6.79	18.25	6.03	18.82	21.64	20.93	19.09	14.75	9.04	24.62	10.96
Merged-chr18-34193219-3	chr18	34193112	34193312	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27772.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	17.77	13.83	12.55	17.29	20.05	10.66	16.61	16.49	19.67	14.06	20.1	4.39
Merged-chr16-44066580-3	chr16	44066483	44066683	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-24575.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	6.06	10.31	17.68	19.31	11.45	14.42	13.95	18.84	13.37	10.04	13.06	10.02
Merged-chr11-64496880-3	chr11	64496767	64496967	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-60193.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	18.98	18.11	22.82	22.93	9.0	6.27	9.97	7.68	24.98	24.6	28.64	21.62
Merged-chr1-84957881-3	chr1	84957769	84957969	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-22786.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	13.33	10.31	21.68	16.89	13.09	21.32	12.29	13.07	10.03	14.56	29.14	13.16
Merged-chr13-102849247-1	chr13	102849147	102849347	+	912.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 5 of 28)	MLT1E3|LTR|ERVL-MaLR	88992.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.25	4.53	7.42	6.03	3.27	10.66	7.64	14.86	4.92	3.01	9.55	2.82
Merged-chr11-69682960-3	chr11	69682869	69683069	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-885.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	14.13	8.55	11.98	6.44	20.86	17.87	2.33	3.87	16.52	27.11	12.06	12.53
Merged-chr7-100502758-1	chr7	100502658	100502858	+	912.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_153527)	TTS (NM_153527)	9400.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.04	8.3	2.85	1.61	15.96	9.41	4.32	11.1	6.69	2.51	14.57	5.64
Merged-chr10-80598216-3	chr10	80598112	80598312	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-4668.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	21.4	12.58	21.68	10.05	11.45	18.5	7.31	10.6	25.96	29.62	18.09	19.74
Merged-chrX-106623832-1	chrX	106623732	106623932	+	912.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	intron (NM_001033541, intron 1 of 3)	-20153.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	5.65	6.29	7.99	8.85	10.23	10.66	1.66	12.34	7.28	7.03	9.04	1.57
Merged-chr1-39650935-3	chr1	39650789	39650989	+	912.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_170597, exon 1 of 4)	exon (NM_170597, exon 1 of 4)	293.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	11.71	5.53	13.69	14.88	13.5	16.62	15.61	17.58	14.75	12.05	23.11	15.66
Merged-chr5-115624224-3	chr5	115624141	115624341	+	912.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7575.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	15.34	10.82	16.54	19.31	9.82	12.23	10.96	12.81	19.08	19.58	19.09	11.59
Merged-chr7-106236874-3	chr7	106236790	106236990	+	912.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21550.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	9.69	15.85	23.96	24.53	13.5	7.84	8.64	18.34	38.75	13.05	29.14	18.48
Merged-chr9-53386892-3	chr9	53386776	53386976	+	912.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	2853.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	11.31	9.81	13.69	16.09	10.64	8.47	10.3	19.09	17.9	16.57	25.12	13.78
Merged-chr11-110420714-2	chr11	110420612	110420812	+	912.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	21610.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	10.09	5.03	14.83	3.62	11.05	10.35	7.64	9.56	13.57	7.03	18.59	5.64
Merged-chr2-137115543-1	chr2	137115443	137115643	+	912.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013822, exon 2 of 26)	exon (NM_013822, exon 2 of 26)	977.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	6.86	4.53	3.42	4.83	12.27	7.21	15.61	11.24	10.82	2.51	8.04	5.64
Merged-chrX-11664777-4	chrX	11664606	11664806	+	912.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	336884.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	4.44	7.29	3.99	6.84	5.73	10.98	11.96	14.33	12.39	14.56	14.57	10.65
Merged-chr14-58072102-3	chr14	58071977	58072177	+	912.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013518)	promoter-TSS (NM_013518)	-609.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	12.52	8.8	14.26	20.51	13.5	14.74	18.6	19.71	8.06	11.05	21.61	11.59
Merged-chr1-172352572-3	chr1	172352472	172352672	+	912.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	11362.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	24.63	20.12	33.09	36.2	42.14	43.27	30.89	39.11	13.18	6.53	11.05	7.52
Merged-chr3-38371900-3	chr3	38371802	38372002	+	912.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112914.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.04	12.07	18.25	14.08	13.5	11.6	10.3	12.31	9.24	3.51	20.6	12.84
Merged-chr17-80175210-3	chr17	80175085	80175285	+	912.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	32120.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	6.86	9.31	19.97	12.47	12.68	13.8	8.97	22.4	15.14	13.56	19.09	15.04
Merged-chr12-101718510-2	chr12	101718356	101718556	+	912.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082976)	promoter-TSS (NM_001082976)	67.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	9.69	15.34	5.7	6.03	5.32	0.63	2.99	1.26	11.6	9.54	10.05	11.9
Merged-chr19-11469455-3	chr19	11469351	11469551	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028595)	promoter-TSS (NM_028595)	83.0	NM_028595	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	26.65	17.86	20.54	6.84	14.73	11.29	17.94	7.32	20.26	13.05	18.59	12.53
Merged-chr10-120848019-1	chr10	120847919	120848119	+	912.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9610.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	2.83	6.54	7.99	5.23	10.64	11.29	10.63	13.65	12.0	4.52	4.52	5.33
Merged-chr17-71102676-3	chr17	71102581	71102781	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-80851.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	14.94	6.29	23.96	9.65	21.68	20.07	7.97	24.31	23.6	24.1	19.09	15.35
Merged-chr2-116890509-3	chr2	116890390	116890590	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355572, intron 10 of 10)	intron (NM_001355572, intron 10 of 10)	-9662.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	21.4	15.34	22.25	28.96	11.86	18.81	21.92	35.69	6.88	9.54	13.06	10.96
Merged-chr18-54990336-3	chr18	54990223	54990423	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175751)	promoter-TSS (NM_175751)	-143.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	16.96	9.31	10.27	11.26	14.32	24.15	16.28	14.3	12.59	21.09	17.59	9.71
Merged-chr10-14545408-3	chr10	14545309	14545509	+	912.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002268)	promoter-TSS (NM_001002268)	-373.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	8.48	8.8	5.7	16.09	12.68	13.8	19.6	15.59	20.46	14.56	28.14	10.65
Merged-chr9-119977055-3	chr9	119976943	119977143	+	912.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153287, exon 2 of 5)	exon (NM_153287, exon 2 of 5)	5980.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	15.34	23.9	6.85	14.08	19.23	19.13	14.28	8.94	19.47	16.07	21.61	10.96
Merged-chr3-131894618-2	chr3	131894561	131894761	+	912.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-190631.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	7.67	4.78	7.99	6.84	6.14	5.33	7.31	13.85	33.04	15.06	31.15	20.99
Merged-chr2-5579610-3	chr2	5579507	5579707	+	912.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	96439.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	11.71	11.32	14.83	11.66	18.0	37.94	13.95	17.61	17.9	20.08	21.61	8.46
Merged-chr2-163750115-4	chr2	163750001	163750201	+	912.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007398, exon 1 of 12)	5' UTR (NM_007398, exon 1 of 12)	138.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	16.15	22.13	11.41	6.84	13.5	12.54	13.95	10.65	9.64	17.07	3.01	8.77
Merged-chr18-39607354-3	chr18	39607263	39607463	+	912.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120118.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	9.29	13.33	6.85	11.66	13.5	16.93	21.92	21.87	14.95	19.58	27.13	11.28
Merged-chr8-84799327-3	chr8	84799232	84799432	+	912.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 1 of 9)	CpG	1006.0	NM_010906	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	19.79	17.36	8.56	11.66	11.86	27.91	12.95	7.18	18.88	14.56	8.04	6.27
Merged-chr1-39580968-3	chr1	39580869	39581069	+	912.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3622.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	10.09	9.56	11.41	12.47	13.91	15.68	15.61	25.15	26.16	6.03	16.58	20.68
Merged-chr2-165883137-3	chr2	165883037	165883237	+	912.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-859.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	20.59	9.06	17.68	11.26	18.0	13.48	16.94	21.84	13.18	8.54	22.11	20.99
Merged-chrX-17591036-1	chrX	17590936	17591136	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18711.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.0	2.26	2.28	7.64	11.86	1.88	14.28	15.98	3.34	0.5	9.55	2.51
Merged-chr9-108995405-3	chr9	108995314	108995514	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	3512.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	12.92	12.07	18.25	14.48	7.36	8.78	9.63	8.41	18.49	15.06	19.6	9.71
Merged-chr6-83109134-3	chr6	83109030	83109230	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026744)	promoter-TSS (NM_026744)	22.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	12.92	16.1	12.55	23.33	25.36	26.03	13.62	15.42	21.44	18.08	23.62	12.84
Merged-chr5-22898766-2	chr5	22898669	22898869	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	MIR3|SINE|MIR	-151885.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	7.27	10.56	14.26	23.33	2.45	0.63	0.0	0.2	37.76	33.64	30.65	21.93
Merged-chr1-171060449-1	chr1	171060349	171060549	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR9B|LTR|ERVK	-1046.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	6.06	6.04	9.13	4.42	12.27	9.09	2.99	16.32	6.88	4.02	6.03	3.45
Merged-chr19-32782209-1	chr19	32782109	32782309	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	ID_B1|SINE|B4	24632.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.06	5.53	13.12	9.65	8.18	3.76	2.99	16.43	4.13	2.51	5.53	1.88
Merged-chr13-51115953-2	chr13	51115833	51116033	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283029, intron 1 of 5)	intron (NM_001283029, intron 1 of 5)	14386.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	5.25	2.52	7.99	8.04	8.59	16.93	9.63	8.55	19.67	12.05	23.62	13.78
Merged-chr12-85472947-1	chr12	85472847	85473047	+	912.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-943.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	11.71	8.05	9.7	6.84	16.36	14.11	4.32	8.69	15.34	10.04	10.05	7.21
Merged-chr3-21735942-2	chr3	21735845	21736045	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-340707.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.46	11.32	2.85	11.26	16.36	14.74	18.93	15.9	6.1	3.51	8.54	3.45
Merged-chr10-127421134-3	chr10	127421042	127421242	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168293, exon 1 of 24)	5' UTR (NM_001168293, exon 1 of 24)	275.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	10.9	17.1	13.69	3.22	16.77	23.2	2.99	8.83	24.39	22.59	31.15	9.71
Merged-chr17-5402839-3	chr17	5402743	5402943	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15924.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	14.54	10.82	9.7	8.45	15.96	17.25	11.63	16.21	21.05	27.62	20.6	19.42
Merged-chr17-35395282-1	chr17	35395182	35395382	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_051981, exon 3 of 3)	non-coding (NR_051981, exon 3 of 3)	1183.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	10.5	3.27	1.14	5.23	4.5	2.2	3.65	1.04	3.54	3.01	3.01	3.13
Merged-chr10-79704897-1	chr10	79704797	79704997	+	912.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	539.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	8.48	7.04	7.99	5.23	5.73	7.53	1.99	9.36	13.96	9.04	16.58	11.9
Merged-chr10-81559501-4	chr10	81559450	81559650	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_074087, exon 1 of 7)	non-coding (NR_074087, exon 1 of 7)	106.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	14.13	12.32	14.26	4.83	15.14	13.48	13.29	13.54	14.75	15.06	18.59	13.47
Merged-chr7-125470124-1	chr7	125470024	125470224	+	912.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	21418.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	7.27	4.02	8.56	2.41	2.45	5.64	1.99	2.8	13.57	5.02	13.57	5.33
Merged-chr6-30301055-1	chr6	30300955	30301155	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3484.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	3.63	2.77	3.99	5.63	9.0	5.02	1.99	7.68	11.01	4.52	1.51	3.76
Merged-chr13-107860205-3	chr13	107860124	107860324	+	911.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	29840.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	11.31	21.88	22.82	18.1	13.5	24.15	12.95	13.88	11.8	10.04	13.57	15.35
Merged-chr15-39785579-4	chr15	39785434	39785634	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164466, intron 8 of 9)	intron (NM_001164466, intron 8 of 9)	-11511.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	6.06	2.77	9.7	5.63	10.23	9.41	16.28	6.0	13.77	11.55	12.06	4.7
Merged-chr8-70546621-3	chr8	70546592	70546792	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7017.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	7.67	11.32	5.7	6.44	6.14	19.13	11.96	15.56	12.59	14.56	9.55	11.9
Merged-chr11-59848261-3	chr11	59848160	59848360	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134029, exon 1 of 5)	exon (NM_134029, exon 1 of 5)	187.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	12.92	14.09	15.4	22.52	15.96	20.38	11.29	20.44	12.19	21.09	14.57	17.23
Merged-chr10-111411759-3	chr10	111411689	111411889	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61438.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	7.67	10.56	7.42	10.46	14.32	8.78	11.29	14.47	17.11	6.53	19.09	15.98
Merged-chr8-25980880-3	chr8	25980765	25980965	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4121.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	13.33	9.81	11.98	6.03	20.05	16.93	11.96	16.35	12.98	15.57	11.05	12.53
Merged-chr4-8939181-3	chr4	8939085	8939285	+	911.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187861.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	14.54	7.04	10.27	17.29	16.77	25.4	18.27	34.54	32.26	33.64	28.14	28.82
Merged-chr17-46680363-3	chr17	46680238	46680438	+	911.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102392)	promoter-TSS (NR_102392)	-115.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	12.52	14.34	3.99	15.28	6.55	12.23	15.28	7.49	12.19	12.05	14.07	8.46
Merged-chr17-28510638-3	chr17	28510545	28510745	+	911.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20216.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	25.84	27.42	29.66	17.29	34.36	28.54	8.3	12.53	42.09	28.12	24.62	10.96
Merged-chr10-69260159-3	chr10	69260065	69260265	+	911.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	46971.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	10.9	9.81	14.83	10.46	17.18	14.11	7.64	9.93	22.62	18.08	25.63	10.34
Merged-chr14-21848413-3	chr14	21848324	21848524	+	911.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	486.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	10.09	17.86	7.99	7.24	19.64	26.34	14.62	16.77	18.49	24.6	26.13	6.27
Merged-chr7-67308297-3	chr7	67308190	67308390	+	911.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	64568.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	16.96	6.79	16.54	14.88	15.96	10.35	4.32	22.01	14.55	7.03	12.56	7.83
Merged-chr11-75586450-3	chr11	75586354	75586554	+	911.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1625.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	10.09	16.6	14.26	11.26	24.14	22.58	14.28	20.41	23.8	17.57	16.58	19.11
Merged-chr12-26068479-3	chr12	26068444	26068644	+	911.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141961.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	9.29	10.56	8.56	17.29	7.77	4.39	20.59	18.53	13.57	6.53	19.09	13.47
Merged-chr14-14800067-2	chr14	14799966	14800166	+	911.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20749.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.25	4.78	10.84	16.89	17.59	4.7	11.63	13.99	14.16	14.56	23.62	5.64
Merged-chr3-106573393-3	chr3	106573278	106573478	+	911.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 6 of 6)	intron (NM_001025582, intron 6 of 6)	-25576.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	11.31	11.32	17.68	17.29	20.05	10.98	42.19	21.93	34.42	13.56	18.09	12.84
Merged-chr13-9107577-3	chr13	9107477	9107677	+	911.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	13696.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	12.11	9.81	16.54	14.08	9.82	13.17	8.97	29.27	27.54	6.03	35.68	14.1
Merged-chr5-34536067-3	chr5	34535959	34536159	+	911.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-7306.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	10.5	12.32	12.55	2.41	28.23	25.09	21.26	13.01	21.64	34.14	21.61	14.41
Merged-chr7-97077144-3	chr7	97077038	97077238	+	911.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4613.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.88	8.55	23.96	20.11	15.14	14.42	27.9	49.26	23.01	2.51	40.2	17.86
Merged-chr2-24608983-1	chr2	24608883	24609083	+	911.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042528, intron 44 of 46)	intron (NM_001042528, intron 44 of 46)	-133384.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	2.02	4.78	2.85	3.62	6.95	8.47	8.3	9.56	6.1	3.01	6.03	6.89
Merged-chr16-97480987-3	chr16	97480887	97481087	+	911.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020622, intron 3 of 7)	MTE2b|LTR|ERVL-MaLR	-18081.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	15.34	9.56	18.25	18.5	18.41	7.84	7.97	20.22	27.54	14.06	17.08	15.04
Merged-chr10-19554029-3	chr10	19553945	19554145	+	911.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37904.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.06	10.06	14.26	13.27	17.59	16.93	16.28	30.14	22.62	22.59	19.09	15.66
Merged-chr18-65466320-3	chr18	65466230	65466430	+	911.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172833, intron 12 of 15)	intron (NM_172833, intron 12 of 15)	35333.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	17.36	10.82	19.4	22.12	17.18	12.86	11.29	21.17	26.36	13.56	27.64	9.4
Merged-chr12-117385509-3	chr12	117385405	117385605	+	911.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48493.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	14.94	18.86	11.98	14.48	9.82	12.86	7.31	9.06	23.41	16.07	24.12	13.16
Merged-chr4-47333734-3	chr4	47333630	47333830	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19492.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	18.57	9.06	37.08	10.86	30.27	27.91	33.88	51.98	22.03	32.13	32.66	16.92
Merged-chr8-126628825-3	chr8	126628717	126628917	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35381.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	20.59	10.82	23.96	22.93	28.64	21.01	11.63	31.65	14.95	13.05	18.59	6.27
Merged-chr13-54207244-3	chr13	54207150	54207350	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	15117.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	23.02	18.86	26.24	10.46	15.14	25.4	19.93	5.55	29.7	19.08	15.07	7.52
Merged-chr1-161713137-2	chr1	161713038	161713238	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75357.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	16.96	18.11	11.98	18.5	15.14	23.52	9.63	28.12	8.46	7.53	7.03	15.98
Merged-chr5-122093185-2	chr5	122093078	122093278	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7773.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	6.86	6.79	18.25	17.7	4.5	5.96	14.95	15.08	1.18	0.0	0.5	1.88
Merged-chr11-3162833-4	chr11	3162733	3162933	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30630.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	25.84	26.91	23.96	26.95	37.23	13.48	18.93	21.28	2.56	2.51	2.51	6.27
Merged-chr7-81214146-3	chr7	81214008	81214208	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	CpG	304.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.85	13.83	12.55	4.83	9.41	8.15	11.63	12.45	11.01	9.54	14.07	22.56
Merged-chr2-150779363-3	chr2	150779245	150779445	+	911.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-7451.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	10.9	8.05	11.41	16.49	15.96	7.84	16.94	20.83	16.13	8.03	16.58	8.14
Merged-chr4-129701666-3	chr4	129701573	129701773	+	911.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4828.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	10.9	16.6	14.83	18.1	11.86	15.37	4.65	12.73	28.13	27.11	29.14	23.49
Merged-chr9-35118845-3	chr9	35118734	35118934	+	911.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-1970.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	18.17	10.31	11.98	12.47	19.23	19.76	31.22	36.76	29.9	19.08	30.65	13.16
Merged-chr8-125726899-5	chr8	125726862	125727062	+	911.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-7241.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	8.88	6.54	19.4	9.65	9.82	7.84	5.98	6.22	8.46	12.05	22.61	8.14
Merged-chr13-81225201-3	chr13	81225100	81225300	+	911.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	261126.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	26.65	11.07	19.4	30.97	29.86	18.5	27.57	40.26	18.69	10.04	12.06	19.11
Merged-chr11-115153951-4	chr11	115153706	115153906	+	911.6785890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021411)	promoter-TSS (NM_021411)	-372.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	16.56	9.06	6.85	9.25	4.91	11.29	4.32	4.82	12.0	18.58	10.05	10.96
Merged-chr13-63696620-1	chr13	63696520	63696720	+	911.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	37678.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0.0	1.01	2.28	2.41	2.45	4.39	1.99	4.21	16.13	10.54	15.58	11.28
Merged-chr16-29606850-1	chr16	29606750	29606950	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27516.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	2.02	3.52	6.85	3.22	15.14	10.98	9.97	22.54	6.29	6.53	9.55	3.45
Merged-chr16-29903652-1	chr16	29903552	29903752	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75472.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	6.06	6.04	12.55	3.22	9.0	9.72	21.92	13.18	5.7	13.56	10.05	7.21
Merged-chr2-73513423-3	chr2	73513360	73513560	+	911.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	16027.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	12.92	11.57	19.97	12.07	6.55	9.09	11.29	20.72	8.65	4.02	12.56	7.83
Merged-chr13-64369175-3	chr13	64369050	64369250	+	911.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009984, exon 2 of 8)	exon (NM_009984, exon 2 of 8)	1370.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	12.11	13.83	11.41	22.12	14.73	16.93	9.97	20.61	16.52	9.54	15.58	11.9
Merged-chr14-62120478-1	chr14	62120378	62120578	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172501.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.63	4.28	3.42	7.24	14.32	2.82	7.97	16.6	1.97	10.04	4.52	4.7
Merged-chr2-145871782-1	chr2	145871682	145871882	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-31459.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.85	4.28	6.28	2.41	3.27	10.98	14.62	8.02	5.51	6.53	3.01	2.19
Merged-chr8-107435753-3	chr8	107435635	107435835	+	911.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-663.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	13.73	8.05	10.84	1.61	20.46	16.62	11.29	17.58	28.52	16.07	21.61	13.78
Merged-chr4-140987283-7	chr4	140987243	140987443	+	911.6530759999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	470.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	6.46	7.55	2.28	5.63	7.77	9.09	6.98	6.64	14.16	14.56	13.57	15.98
Merged-chr12-32765871-3	chr12	32765762	32765962	+	911.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54473.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	12.52	8.3	18.25	18.1	14.32	12.86	16.28	19.49	23.21	12.55	30.65	16.92
Merged-chr19-25139518-1	chr19	25139418	25139618	+	911.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97457.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.63	5.03	0.0	0.0	4.09	4.7	4.32	2.58	24.0	29.12	27.13	8.46
Merged-chr10-19693067-6	chr10	19692939	19693139	+	911.586121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19548.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	11.31	7.29	2.85	6.44	5.73	5.96	8.3	8.05	7.08	7.03	12.56	10.65
Merged-chr11-28188335-2	chr11	28188238	28188438	+	911.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	395986.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.0	0.5	0.57	1.61	14.32	16.93	11.96	18.64	13.18	11.55	12.56	11.59
Merged-chr5-124493573-3	chr5	124493483	124493683	+	911.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021430, exon 7 of 7)	3' UTR (NM_021430, exon 7 of 7)	10428.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	9.69	10.31	21.68	15.28	24.96	17.87	17.61	23.13	22.82	24.6	14.07	11.28
Merged-chr4-117202411-4	chr4	117202308	117202508	+	911.569458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19784.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	11.71	9.56	14.83	12.07	4.09	11.92	6.31	7.04	17.7	15.57	10.05	10.96
Merged-chr18-62069024-3	chr18	62068910	62069110	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110971.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	16.56	15.09	13.69	12.47	23.73	18.19	13.95	23.75	20.85	20.59	12.56	13.47
Merged-chr2-24341635-3	chr2	24341527	24341727	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031167, intron 1 of 4)	intron (NM_031167, intron 1 of 4)	-3664.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	9.69	11.82	7.99	14.88	18.0	21.64	15.28	19.6	28.91	28.12	24.12	22.87
Merged-chr8-14879329-3	chr8	14879235	14879435	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR31C_MM|LTR|ERVK	-9201.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	15.34	8.55	4.56	13.67	25.77	33.87	25.24	28.09	29.11	23.1	35.68	26.31
Merged-chr11-118353761-3	chr11	118353666	118353866	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1645.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	16.56	6.79	5.13	11.66	22.91	17.25	23.58	22.07	14.95	18.08	16.58	5.33
Merged-chr8-40423728-3	chr8	40423628	40423828	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357249)	promoter-TSS (NM_001357249)	-87.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	33.92	33.7	30.8	50.68	37.23	43.9	45.18	56.41	10.23	9.54	15.07	7.52
Merged-chr11-60879570-3	chr11	60879460	60879660	+	911.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	-522.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	19.38	14.09	15.4	8.04	20.86	16.31	9.63	12.79	23.01	15.57	15.07	13.16
Merged-chr10-78297762-3	chr10	78297659	78297859	+	911.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	42448.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	7.67	9.31	18.83	22.93	16.36	18.19	19.27	21.06	11.8	8.03	17.59	11.59
Merged-chr9-58204798-3	chr9	58204728	58204928	+	911.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	-509.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	15.75	13.58	14.83	10.46	15.96	18.19	5.98	12.73	19.28	21.59	22.11	10.65
Merged-chr8-69091239-3	chr8	69091130	69091330	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-2008.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	14.13	8.3	15.4	19.71	16.77	10.35	8.97	15.93	31.86	25.61	21.61	21.93
Merged-chr9-40776645-1	chr9	40776545	40776745	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 5 of 6)	RSINE1|SINE|B4	-24628.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.67	4.78	10.84	10.05	10.64	6.27	4.65	12.7	1.18	0.5	2.51	0.0
Merged-chr12-25438530-1	chr12	25438430	25438630	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	309356.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.04	5.28	16.54	3.62	4.09	7.21	9.97	12.39	3.15	6.53	9.04	2.82
Merged-chr4-116175896-2	chr4	116175806	116176006	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2534.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	10.5	4.02	5.7	15.28	12.27	16.93	6.64	12.79	18.1	26.11	12.56	8.77
Merged-chr14-118900588-1	chr14	118900488	118900688	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360411, intron 11 of 21)	intron (NM_001360411, intron 11 of 21)	22203.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	6.06	6.79	4.56	4.83	15.14	9.09	19.27	26.07	8.46	3.51	6.03	4.07
Merged-chr15-98894085-2	chr15	98893964	98894164	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007857, exon 3 of 3)	exon (NM_007857, exon 3 of 3)	4476.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	9.69	13.33	4.56	5.63	9.41	8.15	2.66	6.59	6.69	7.53	7.54	11.28
Merged-chr15-64003326-3	chr15	64003223	64003423	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	-5257.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	20.19	14.59	13.69	16.09	20.86	9.72	13.95	23.86	25.37	12.55	16.08	16.6
Merged-chr9-114690332-2	chr9	114690222	114690422	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	1491.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	10.5	3.52	5.13	4.02	14.32	5.33	15.61	11.36	12.0	7.03	9.55	9.71
Merged-chr17-86663730-3	chr17	86663631	86663831	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-90133.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	10.5	8.05	17.68	32.98	39.68	39.2	43.18	49.99	23.01	34.65	50.75	33.21
Merged-chr4-141857654-3	chr4	141857544	141857744	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025994)	TTS (NM_025994)	-11285.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	13.73	16.6	3.42	10.86	16.36	13.48	8.64	13.01	20.06	20.08	32.16	10.34
Merged-chr11-108261963-3	chr11	108261863	108262063	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	L1MB2|LINE|L1	81925.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	16.96	32.7	30.8	30.97	7.36	5.02	8.3	7.91	31.08	16.07	17.08	10.34
Merged-chr1-143888682-1	chr1	143888582	143888782	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111404.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	9.29	4.28	2.28	9.65	9.41	5.64	5.31	9.45	5.51	4.52	10.05	6.58
Merged-chr10-118736288-3	chr10	118736189	118736389	+	911.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	132614.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	15.34	9.81	17.11	20.51	7.36	20.38	15.94	19.88	53.7	24.6	51.76	24.75
Merged-chr1-143710567-3	chr1	143710501	143710701	+	911.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-7708.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	10.5	7.8	13.69	14.48	9.41	10.35	11.96	16.07	8.46	11.05	12.06	12.22
Merged-chr3-126650564-3	chr3	126650462	126650662	+	911.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	53611.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	12.52	6.29	15.4	10.86	20.86	14.42	5.31	11.27	14.75	7.03	15.07	10.34
Merged-chr2-167951442-3	chr2	167951352	167951552	+	911.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	19125.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	14.54	8.3	6.85	3.62	24.55	22.58	12.62	21.48	23.8	19.08	16.58	12.22
Merged-chrX-140542413-4	chrX	140542355	140542555	+	911.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 2 of 3)	intron (NM_001077364, intron 2 of 3)	213.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	8.08	7.04	8.56	10.86	14.73	9.41	11.63	4.71	12.59	9.04	26.13	11.59
Merged-chr1-172321603-2	chr1	172321502	172321702	+	911.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008429, exon 4 of 4)	3' UTR (NM_008429, exon 4 of 4)	7720.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	13.33	13.08	13.12	10.86	15.55	24.15	14.95	19.04	5.11	5.02	3.52	7.52
Merged-chr12-102730558-2	chr12	102730460	102730660	+	911.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	13101.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	4.85	3.77	1.14	4.02	8.18	9.09	2.66	11.05	23.8	35.65	20.6	12.22
Merged-chr3-69679582-2	chr3	69679462	69679662	+	911.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-42493.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	4.04	12.32	2.85	9.25	5.32	11.92	14.62	7.46	9.44	13.05	13.06	7.52
Merged-chr7-79149046-1	chr7	79148946	79149146	+	911.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008594)	promoter-TSS (NM_008594)	14.0	NM_001045489	17304.0	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	6.86	2.26	5.7	6.84	12.27	7.53	12.29	10.6	1.97	4.52	13.06	1.88
Merged-chr4-138024845-1	chr4	138024745	138024945	+	911.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	27020.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.06	6.04	22.25	7.64	17.18	8.15	12.62	13.85	1.38	0.0	1.0	2.51
Merged-chr5-64804222-3	chr5	64804095	64804295	+	911.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	CpG	672.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.27	12.83	22.25	6.03	13.91	14.74	15.94	12.62	16.72	12.55	13.06	15.04
Merged-chr3-142527631-3	chr3	142527525	142527725	+	911.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2711.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	12.11	13.33	3.99	2.82	10.23	11.29	6.31	9.06	29.7	26.11	29.14	12.22
Merged-chr2-150981553-2	chr2	150981456	150981656	+	911.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	27842.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	5.65	4.28	5.13	13.27	18.82	7.53	10.3	13.21	4.52	2.51	18.09	10.96
Merged-chr6-124993522-3	chr6	124993413	124993613	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3207.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	16.96	5.28	18.25	7.24	47.46	33.87	30.56	42.5	25.96	16.07	7.03	12.53
Merged-chr8-40294479-3	chr8	40294382	40294582	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7529.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	28.27	24.9	49.63	45.05	33.55	34.81	49.49	63.9	9.24	8.03	14.07	16.6
Merged-chr4-149462470-1	chr4	149462370	149462570	+	911.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7502.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	4.04	0.75	2.85	3.62	9.41	8.47	3.99	9.67	6.29	5.02	7.54	4.39
Merged-chr18-52468296-1	chr18	52468196	52468396	+	911.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026040, intron 1 of 7)	intron (NM_026040, intron 1 of 7)	2603.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	2.02	0.5	1.14	3.22	1.64	2.51	1.33	3.53	12.78	31.63	12.06	20.36
Merged-chr2-153515179-1	chr2	153515079	153515279	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	14792.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	19.38	14.09	13.69	23.33	3.27	2.51	2.99	4.04	5.11	3.01	1.0	5.33
Merged-chr10-128779041-3	chr10	128778992	128779192	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11818.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	9.69	9.56	9.7	20.51	14.73	6.59	14.62	35.83	25.57	9.54	35.17	15.04
Merged-chr1-181256435-3	chr1	181256370	181256570	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44492.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	9.69	11.07	6.28	11.26	9.0	14.74	10.63	9.98	9.44	7.03	16.08	10.02
Merged-chr7-67458079-3	chr7	67457961	67458161	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-85203.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	13.33	6.04	23.39	13.67	15.14	19.44	17.27	21.93	26.95	12.05	29.14	15.04
Merged-chr4-154019671-3	chr4	154019573	154019773	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163722)	TTS (NM_001163722)	6371.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	24.23	18.11	17.11	20.91	18.0	11.29	9.97	14.05	11.41	12.55	16.08	4.39
Merged-chr1-85985917-3	chr1	85985826	85986026	+	911.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24871.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	6.06	11.32	17.68	7.24	9.82	16.62	9.97	10.77	36.98	24.1	34.17	10.34
Merged-chr10-84549297-3	chr10	84549201	84549401	+	911.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040658, exon 3 of 4)	non-coding (NR_040658, exon 3 of 4)	4037.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	13.73	10.06	15.97	18.5	24.96	18.19	22.92	31.88	10.62	6.53	15.58	12.84
Merged-chr7-46963443-3	chr7	46963347	46963547	+	911.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4929.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	19.38	15.85	13.69	7.24	19.23	14.11	6.31	17.69	18.88	23.6	22.61	19.42
Merged-chr6-129276681-3	chr6	129276594	129276794	+	911.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1325.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	10.9	8.8	6.28	12.87	17.18	14.74	10.3	11.64	17.51	16.07	20.1	12.84
Merged-chr13-36547479-3	chr13	36547379	36547579	+	911.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	186998.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	7.27	6.04	13.12	16.09	9.82	11.6	24.25	17.19	39.34	31.13	49.75	22.24
Merged-chr16-89844756-3	chr16	89844643	89844843	+	911.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-26391.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	13.73	9.56	5.7	6.03	16.77	7.84	10.3	13.15	18.49	8.54	18.09	12.84
Merged-chr10-128097382-1	chr10	128097282	128097482	+	911.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054078, intron 2 of 29)	CpG	4599.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	10.9	8.3	4.56	6.03	7.36	13.48	13.29	9.06	7.47	3.51	7.54	13.16
Merged-chr19-53452743-2	chr19	53452641	53452841	+	911.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	12055.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	9.29	8.3	19.4	23.73	16.77	17.56	18.6	25.23	2.36	0.0	0.5	1.57
Merged-chr14-47004133-5	chr14	47004021	47004221	+	911.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	2781.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.04	9.31	7.99	3.22	7.77	11.29	7.31	7.65	9.05	15.06	13.06	10.96
Merged-chr10-128082179-3	chr10	128082083	128082283	+	911.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1124.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	14.13	7.55	18.83	9.25	16.36	14.11	22.59	18.42	18.29	7.53	19.6	14.1
Merged-chrX-102094636-3	chrX	102094510	102094710	+	911.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23303.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	8.08	12.58	23.39	8.45	20.86	27.59	17.27	14.44	32.85	30.13	40.7	15.98
Merged-chr1-64118904-3	chr1	64118769	64118969	+	911.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	2520.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	10.5	9.31	19.4	4.83	7.77	9.72	15.28	12.22	16.52	17.07	14.57	10.34
Merged-chr16-93812486-3	chr16	93812398	93812598	+	911.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(ACTG)n|Simple_repeat|Simple_repeat	-17597.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	8.08	14.84	13.69	16.49	14.73	18.5	10.63	19.99	48.39	40.17	35.68	26.31
Merged-chr12-76196739-3	chr12	76196643	76196843	+	911.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19484.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	25.04	12.07	11.41	24.13	13.5	19.13	9.97	17.07	11.41	12.55	20.1	9.4
Merged-chr11-114209087-2	chr11	114208998	114209198	+	911.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10840.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	1.21	1.51	0.0	0.8	11.45	8.15	11.96	12.34	22.62	10.04	24.12	20.68
Merged-chr13-48548514-3	chr13	48548417	48548617	+	911.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-10245.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	19.79	10.06	17.68	16.89	13.09	12.54	14.28	14.86	21.24	19.08	17.08	12.22
Merged-chr6-124916038-3	chr6	124915940	124916140	+	911.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-823.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	16.15	11.32	10.27	15.69	21.68	9.41	11.63	15.0	14.95	15.57	11.56	6.58
Merged-chr4-63823357-2	chr4	63823250	63823450	+	911.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	37934.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	3.23	7.55	11.41	9.25	21.68	5.02	4.32	15.7	10.23	18.58	19.6	13.47
Merged-chr18-10229773-2	chr18	10229665	10229865	+	911.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47973.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	3.63	4.78	5.13	5.23	10.64	9.09	13.29	11.97	17.11	12.55	19.6	14.72
Merged-chr9-57638101-3	chr9	57638015	57638215	+	911.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	7538.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	14.54	10.06	18.83	11.26	29.86	15.68	22.59	30.98	18.69	11.55	11.56	17.54
Merged-chr19-11559815-3	chr19	11559693	11559893	+	911.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22944.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	16.96	20.37	11.41	18.1	29.86	19.13	13.29	3.28	22.03	26.11	20.1	12.84
Merged-chr18-4351886-3	chr18	4351782	4351982	+	911.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1071.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.48	8.05	21.11	12.87	29.46	19.76	15.61	15.34	21.83	20.59	37.18	17.54
Merged-chr12-51939897-3	chr12	51939790	51939990	+	911.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177171, intron 11 of 35)	intron (NM_177171, intron 11 of 35)	31431.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	15.34	13.08	10.84	18.5	13.91	15.37	6.98	28.96	11.8	9.04	23.11	10.34
Merged-chr16-33381308-1	chr16	33381208	33381408	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358570)	promoter-TSS (NM_001358570)	6.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	2.83	12.32	4.56	9.65	7.77	8.15	11.96	7.23	6.29	13.56	3.01	5.64
Merged-chr8-46772998-1	chr8	46772898	46773098	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	33253.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.86	5.79	5.13	9.25	3.27	4.39	8.3	8.05	6.29	4.02	3.52	1.88
Merged-chr6-32521878-1	chr6	32521778	32521978	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	10737.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	1.21	5.03	10.27	4.02	3.27	4.08	8.3	7.4	2.36	4.02	7.03	4.39
Merged-chr12-79298047-3	chr12	79297944	79298144	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	693.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	16.96	16.85	10.84	11.66	21.68	23.52	22.26	31.15	17.31	21.09	21.61	15.35
Merged-chr8-79196861-1	chr8	79196761	79196961	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51722.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	2.83	2.52	6.28	6.03	5.73	1.25	6.31	11.1	4.52	0.5	3.52	6.58
Merged-chr15-91165218-1	chr15	91165118	91165318	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	MER20|DNA|hAT-Charlie	26789.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.46	3.77	2.28	8.04	3.27	7.84	4.32	8.05	8.85	6.53	10.05	2.19
Merged-chr17-5511646-3	chr17	5511551	5511751	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	19051.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	10.09	22.64	15.4	10.86	20.46	37.63	15.61	9.03	28.52	17.07	23.11	7.83
Merged-chr17-47255312-1	chr17	47255212	47255412	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	25082.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	1.76	1.71	4.02	7.77	5.33	3.99	9.45	1.18	0.0	0.5	7.52
Merged-chr5-43802007-1	chr5	43801907	43802107	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie9|DNA|hAT-Charlie	-16886.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.0	1.51	2.28	0.8	5.73	5.33	9.97	10.79	3.54	5.02	4.02	4.39
Merged-chr17-34342093-1	chr17	34341993	34342193	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001033978)	TTS (NM_001033978)	2552.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	4.44	4.53	3.99	0.0	0.0	2.51	0.33	0.56	5.7	0.0	1.0	1.88
Merged-chr7-110286337-1	chr7	110286237	110286437	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	11.31	13.33	5.7	4.83	3.27	1.57	0.66	0.81	3.74	6.53	1.0	3.45
Merged-chr10-20390802-1	chr10	20390702	20390902	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42983.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	8.08	4.02	7.99	6.44	1.64	4.39	6.31	7.26	3.15	4.52	3.52	8.14
Merged-chr5-41684178-1	chr5	41684078	41684278	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310592, intron 4 of 6)	Lx7|LINE|L1	23513.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.23	5.53	0.0	4.83	15.55	14.11	9.63	11.69	6.49	3.51	9.04	7.21
Merged-chr8-83100267-1	chr8	83100167	83100367	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65085.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.65	3.77	7.99	4.02	2.45	9.72	1.99	5.24	11.6	7.53	6.53	5.01
Merged-chr13-118767717-1	chr13	118767617	118767817	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	53018.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	8.48	5.79	6.28	10.86	12.27	10.98	9.97	20.72	2.56	1.51	0.5	0.31
Merged-chr11-23666464-2	chr11	23666372	23666572	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	496.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	7.67	7.04	14.26	16.89	13.09	14.11	15.94	14.22	14.16	15.57	20.1	15.98
Merged-chr7-145289523-1	chr7	145289423	145289623	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5512.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.21	2.52	4.56	1.61	10.64	3.14	2.99	7.26	0.98	9.04	6.03	4.07
Merged-chr1-134699213-2	chr1	134699128	134699328	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10072.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	19.38	26.16	25.1	14.48	12.68	11.92	4.32	5.19	6.69	8.54	2.01	6.58
Merged-chr5-65107970-2	chr5	65107876	65108076	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347355, intron 1 of 10)	CpG	408.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	14.13	13.83	5.13	13.67	7.77	12.86	18.6	9.73	19.67	19.58	8.54	15.04
Merged-chr8-3711864-3	chr8	3711786	3711986	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8765.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	15.34	10.06	23.39	22.12	19.64	13.17	10.3	26.61	29.31	12.55	24.62	13.47
Merged-chr2-148491340-3	chr2	148491256	148491456	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47821.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	13.73	10.82	11.41	16.49	22.91	6.27	11.29	14.1	13.57	14.06	11.05	10.34
Merged-chr8-105573671-1	chr8	105573571	105573771	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271806, intron 1 of 4)	intron (NM_001271806, intron 1 of 4)	-5370.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	13.33	6.29	10.84	13.67	4.09	4.7	1.33	4.79	6.29	7.03	8.54	3.13
Merged-chr9-7221223-1	chr9	7221123	7221323	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	36718.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	9.29	8.3	17.11	14.88	6.95	7.53	3.99	13.18	12.19	7.03	24.12	9.08
Merged-chr17-5765939-3	chr17	5765857	5766057	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32700.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	21.4	16.35	25.1	30.16	17.18	15.68	21.59	40.88	13.77	13.05	46.73	25.37
Merged-chr10-39370673-2	chr10	39370577	39370777	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	C-rich|Low_complexity|Low_complexity	878.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.27	4.53	4.56	4.42	13.91	7.53	10.3	16.79	10.42	5.02	10.05	5.64
Merged-chr2-19274239-3	chr2	19274141	19274341	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-70076.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	9.69	6.29	11.41	11.26	6.95	10.66	4.65	12.03	12.19	6.53	9.55	11.9
Merged-chr17-15804562-3	chr17	15804417	15804617	+	910.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22069.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.04	9.81	16.54	5.63	15.96	12.23	14.95	10.65	12.39	8.03	9.55	10.65
Merged-chr15-73184533-3	chr15	73184430	73184630	+	910.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	CpG	417.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	13.73	26.16	7.99	8.85	22.09	27.91	15.28	15.98	20.65	23.1	30.15	21.93
Merged-chr8-120620450-3	chr8	120620360	120620560	+	910.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	13922.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	16.56	12.07	7.99	10.86	28.64	34.18	33.22	18.79	23.21	16.57	17.08	14.72
Merged-chrX-71039296-3	chrX	71039202	71039402	+	910.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10954.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	20.59	18.11	7.42	7.24	23.73	20.38	15.94	20.02	10.82	18.08	13.57	7.52
Merged-chr9-118589462-3	chr9	118589341	118589541	+	910.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17268.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.69	8.55	21.11	8.85	18.0	12.86	11.63	14.1	17.51	18.58	21.61	15.66
Merged-chr10-97313148-3	chr10	97313040	97313240	+	910.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110338.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	10.09	12.07	14.26	13.67	20.86	19.44	10.3	15.95	26.16	41.67	37.69	9.71
Merged-chr11-63093515-2	chr11	63093403	63093603	+	910.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	31844.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.04	3.02	9.13	6.03	8.18	10.66	9.3	14.58	12.0	5.02	15.07	5.95
Merged-chr1-64343435-3	chr1	64343318	64343518	+	910.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-189386.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	16.15	7.55	15.97	10.46	19.64	22.89	18.6	29.22	24.19	21.59	22.11	14.1
Merged-chr19-17255728-3	chr19	17255615	17255815	+	910.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83790.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	9.29	10.82	21.68	9.25	10.64	6.27	9.63	11.27	12.39	5.52	16.08	4.07
Merged-chr6-123175549-5	chr6	123175477	123175677	+	910.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004159, intron 2 of 5)	intron (NM_001004159, intron 2 of 5)	2554.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	3.23	6.54	2.85	4.42	7.36	10.98	9.97	7.49	10.03	6.03	9.55	6.58
Merged-chr4-84372623-3	chr4	84372520	84372720	+	910.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172870, intron 4 of 5)	PB1D7|SINE|Alu	302466.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	10.5	17.61	7.99	20.11	31.91	18.19	17.61	39.11	24.0	19.58	32.66	20.05
Merged-chr2-151974312-3	chr2	151974212	151974412	+	910.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-331.0	NM_028666	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	19.38	13.83	16.54	6.84	20.46	21.01	12.62	7.29	24.98	34.65	25.12	10.02
Merged-chr10-93962366-2	chr10	93962258	93962458	+	910.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	1505.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	2.42	5.53	5.13	9.65	11.05	3.76	6.31	12.87	28.52	19.08	19.6	21.62
Merged-chr5-8347586-2	chr5	8347483	8347683	+	910.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	20577.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	10.5	2.77	14.26	14.08	4.09	5.33	10.3	12.06	11.21	5.02	8.04	5.33
Merged-chr6-71224510-3	chr6	71224432	71224632	+	910.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160127, intron 6 of 9)	MER76|LTR|ERVL	24653.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	19.38	7.55	27.95	10.05	8.18	13.17	23.92	24.53	13.57	12.55	15.07	18.48
Merged-chr17-31565485-2	chr17	31565385	31565585	+	910.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016670, intron 1 of 10)	CpG	712.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	18.17	26.41	4.56	14.48	8.18	12.54	7.64	10.21	18.69	11.05	11.05	13.47
Merged-chr9-118608591-2	chr9	118608502	118608702	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1893.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	10.9	9.31	34.23	24.53	11.86	19.44	15.94	26.8	13.37	21.59	31.66	29.45
Merged-chr14-16547752-1	chr14	16547652	16547852	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	27724.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	14.54	8.3	30.8	15.28	0.0	0.63	1.33	1.54	0.59	0.5	0.0	0.0
Merged-chr8-66393128-3	chr8	66393024	66393224	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	6823.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	14.94	4.53	15.97	21.32	11.45	12.23	19.93	22.18	16.72	10.04	17.59	6.58
Merged-chr3-100703394-3	chr3	100703294	100703494	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17921.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	16.56	11.82	13.69	17.7	14.32	7.21	16.94	22.09	35.8	25.61	21.61	21.93
Merged-chr14-120307109-3	chr14	120306948	120307148	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	596.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.88	7.8	3.99	4.42	4.5	11.92	4.98	3.28	8.06	13.56	9.55	2.51
Merged-chr6-70872287-3	chr6	70872188	70872388	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27773.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	12.11	12.83	6.85	7.24	24.14	40.14	12.29	17.19	23.01	18.08	16.58	12.53
Merged-chr8-128453663-3	chr8	128453537	128453737	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	94396.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	13.33	14.84	16.54	7.64	14.73	24.77	14.95	17.86	10.82	10.04	14.07	7.52
Merged-chr9-104039932-3	chr9	104039829	104040029	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028721, intron 24 of 26)	intron (NM_028721, intron 24 of 26)	23192.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	12.92	5.03	6.28	8.45	11.86	15.37	2.66	7.29	21.05	8.54	18.59	6.58
Merged-chr15-102243983-3	chr15	102243873	102244073	+	910.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2527.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	15.75	17.61	14.26	1.61	2.45	30.1	11.96	0.56	23.6	25.61	15.58	4.7
Merged-chr3-95676956-3	chr3	95676865	95677065	+	910.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144899, exon 18 of 18)	exon (NM_144899, exon 18 of 18)	10952.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	13.33	11.32	1.14	3.22	13.09	20.38	6.64	9.25	15.14	12.55	11.05	8.46
Merged-chr7-81860748-3	chr7	81860649	81860849	+	910.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1748.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	10.5	16.6	30.8	25.74	24.96	15.68	11.96	27.9	12.59	19.58	31.66	19.74
Merged-chr7-104258902-1	chr7	104258802	104259002	+	910.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030684, intron 4 of 7)	(TTC)n|Simple_repeat|Simple_repeat	14445.0	NM_030684	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.63	0.0	0.53	18.1	7.03	16.58	10.96
Merged-chr16-42190323-1	chr16	42190223	42190423	+	910.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	113146.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	7.27	4.53	1.14	4.83	9.82	13.8	2.99	17.41	1.97	3.51	9.04	8.77
Merged-chrX-57309405-1	chrX	57309305	57309505	+	910.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	17196.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	3.23	6.79	6.85	3.62	4.91	9.72	7.64	9.0	3.34	9.04	2.51	11.9
Merged-chr14-51255063-1	chr14	51254963	51255163	+	910.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_053113)	TTS (NM_053113)	1049.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	5.65	1.01	6.85	5.63	5.73	10.03	10.96	12.79	4.72	15.57	5.53	4.39
Merged-chr13-112116224-3	chr13	112116107	112116307	+	910.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172244.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	17.36	15.09	26.81	20.51	11.05	10.03	13.62	18.34	11.01	15.57	11.56	11.28
Merged-chr4-148586817-2	chr4	148586717	148586917	+	910.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-4696.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	13.73	15.34	14.83	24.53	13.09	17.25	20.59	17.55	3.34	7.53	4.02	4.07
Merged-chr7-99263714-2	chr7	99263613	99263813	+	910.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_103487, exon 3 of 4)	non-coding (NR_103487, exon 3 of 4)	3505.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	18.57	10.82	9.7	6.84	5.32	21.64	10.3	8.61	8.65	9.04	8.54	4.7
Merged-chr7-29008897-2	chr7	29008789	29008989	+	910.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 100 of 105)	intron (NM_009109, intron 100 of 105)	26035.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	20.19	13.83	14.26	10.86	19.64	21.01	13.29	15.08	1.77	2.51	1.51	4.07
Merged-chr10-21419399-2	chr10	21419315	21419515	+	910.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	42115.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	1.21	2.77	2.28	2.01	4.91	7.84	10.96	9.28	59.99	41.17	54.77	46.99
Merged-chr7-89215902-3	chr7	89215810	89216010	+	910.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	MTC|LTR|ERVL-MaLR	122877.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.48	8.05	13.12	14.88	14.32	19.44	22.92	21.5	19.67	12.05	20.6	12.22
Merged-chr17-51288069-3	chr17	51287975	51288175	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	10087.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	12.11	7.8	11.98	18.9	18.0	26.34	25.58	26.16	16.92	15.57	23.11	19.74
Merged-chr19-41104612-3	chr19	41104533	41104733	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 12 of 20)	B4|SINE|B4	-27520.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	20.19	13.08	17.68	18.5	7.36	1.88	7.64	18.17	20.46	13.56	15.07	10.02
Merged-chr8-105171518-3	chr8	105171409	105171609	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161456, intron 2 of 4)	CpG-14413	835.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	20.59	15.09	9.7	15.28	22.09	9.72	18.93	19.51	15.93	11.55	29.65	20.05
Merged-chr7-44527696-3	chr7	44527577	44527777	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019866, exon 6 of 6)	3' UTR (NM_019866, exon 6 of 6)	-3008.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	11.31	8.55	7.42	3.22	12.27	14.11	4.32	7.32	12.0	15.57	13.06	8.46
Merged-chr11-45853085-3	chr11	45852987	45853187	+	910.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	1123.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	21.8	12.83	12.55	8.45	25.77	14.42	5.65	17.38	21.24	18.58	23.11	12.84
Merged-chr3-69923191-2	chr3	69923075	69923275	+	910.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-63281.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.0	4.78	3.42	1.21	8.18	8.47	3.65	7.88	19.47	29.12	39.19	16.6
Merged-chr18-54721262-1	chr18	54721162	54721362	+	910.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109518.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	1.62	0.5	1.14	0.8	13.91	19.13	7.31	12.84	2.36	1.0	2.51	0.63
Merged-chr9-83564411-2	chr9	83564327	83564527	+	910.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	16089.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	16.96	12.07	17.11	15.28	11.45	16.93	9.97	14.78	3.74	10.04	6.53	4.7
Merged-chr10-19108003-3	chr10	19107911	19108111	+	910.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-33738.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	7.27	8.3	15.97	21.72	16.36	26.03	14.62	19.51	42.68	29.12	33.16	20.36
Merged-chr17-56265229-3	chr17	56265071	56265271	+	910.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8378.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	17.77	12.58	13.12	12.47	8.59	16.62	5.98	15.34	16.33	20.08	18.09	16.6
Merged-chr18-62228505-3	chr18	62228419	62228619	+	910.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48419.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	14.13	13.58	10.84	17.7	18.41	15.05	16.28	9.56	13.57	11.05	16.08	11.59
Merged-chr8-61911125-3	chr8	61910961	61911161	+	910.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8367.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.08	5.28	8.56	8.85	8.59	8.78	15.94	8.97	8.85	16.07	13.06	14.72
Merged-chr19-10173601-3	chr19	10173512	10173712	+	910.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9276.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	20.19	18.11	20.54	12.07	25.77	25.09	16.61	13.4	21.44	30.63	15.07	12.22
Merged-chr13-113378485-3	chr13	113378380	113378580	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124364.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.86	10.31	11.41	7.64	44.59	30.73	34.88	33.73	41.3	25.61	52.26	23.49
Merged-chr15-75876120-3	chr15	75876015	75876215	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12608.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	12.92	18.86	12.55	16.49	9.82	14.11	15.94	19.29	28.13	30.63	34.17	30.07
Merged-chr5-100587800-3	chr5	100587698	100587898	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15593.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	10.09	18.61	29.09	6.84	13.91	17.56	11.96	15.36	24.0	21.09	15.07	11.59
Merged-chr9-92457447-1	chr9	92457347	92457547	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178711)	promoter-TSS (NM_178711)	69.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	1.21	2.26	1.71	6.03	10.23	7.21	5.65	12.08	1.18	0.5	2.51	2.82
Merged-chr7-25436380-3	chr7	25436282	25436482	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23496.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	25.04	14.34	7.42	8.04	16.36	49.23	11.63	20.72	18.1	16.57	19.6	6.27
Merged-chr3-27439830-3	chr3	27439703	27439903	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68452.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	12.92	10.56	10.27	8.45	27.41	23.83	37.87	42.67	21.44	21.59	28.64	9.08
Merged-chrX-106152006-1	chrX	106151906	106152106	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	8731.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	1.62	0.5	4.56	1.61	6.55	5.96	3.32	8.33	6.29	4.52	3.01	3.13
Merged-chr7-45800694-3	chr7	45800619	45800819	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005511, intron 14 of 15)	intron (NM_001005511, intron 14 of 15)	13597.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	15.34	16.85	19.4	10.05	26.59	20.38	13.95	12.14	22.62	10.54	21.1	10.96
Merged-chr3-146422004-2	chr3	146421900	146422100	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253770, intron 4 of 13)	L1M2|LINE|L1	17358.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	3.63	5.03	2.85	8.45	9.0	4.39	7.31	10.09	13.37	4.52	16.58	5.01
Merged-chr1-72942554-1	chr1	72942454	72942654	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-67689.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.81	0.0	1.14	0.0	10.23	7.21	3.99	7.96	0.0	0.5	4.52	0.0
Merged-chr12-85963875-2	chr12	85963770	85963970	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115171.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.85	4.02	3.99	4.02	18.0	18.5	15.28	23.8	7.87	13.05	5.02	13.16
Merged-chr15-83166816-3	chr15	83166713	83166913	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	5395.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	10.5	14.59	13.69	15.28	20.86	10.66	11.29	17.44	21.64	29.62	26.13	17.23
Merged-chr17-7316016-2	chr17	7315935	7316135	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8625.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	0.81	2.26	0.57	0.4	15.55	11.29	10.3	9.36	13.18	17.07	18.09	8.77
Merged-chr9-59749698-3	chr9	59749568	59749768	+	910.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	981.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	12.52	11.57	23.96	9.65	17.59	15.68	6.64	15.22	16.92	7.03	14.07	15.35
Merged-chr13-65101485-3	chr13	65101386	65101586	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	11496.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	20.19	16.85	15.4	16.49	20.46	10.35	9.63	11.38	18.1	8.54	15.58	9.71
Merged-chr9-13525872-3	chr9	13525778	13525978	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94111.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	27.86	30.94	22.82	39.01	19.64	27.91	10.96	32.3	13.57	6.03	3.01	8.77
Merged-chr13-35209771-3	chr13	35209661	35209861	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126478)	TTS (NR_126478)	2287.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	14.13	18.61	25.67	25.74	20.46	15.99	15.61	17.72	13.96	12.05	13.57	9.71
Merged-chr10-61134219-3	chr10	61134110	61134310	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 2 of 14)	RLTR17|LTR|ERVK	13474.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	30.28	10.82	10.84	11.26	14.73	13.17	9.3	13.96	22.23	22.09	28.64	13.47
Merged-chr13-91517161-3	chr13	91517077	91517277	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	ORR1D2|LTR|ERVL-MaLR	56080.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	58.95	50.56	51.34	86.88	41.73	32.93	47.5	37.23	14.36	12.05	17.59	3.13
Merged-chr11-88203840-3	chr11	88203743	88203943	+	910.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-545.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	14.13	14.34	6.28	6.03	10.23	8.78	5.31	9.87	12.19	10.54	26.13	9.71
Merged-chr7-126725856-2	chr7	126725752	126725952	+	910.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-21036.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	6.46	3.27	6.85	2.41	18.0	16.31	5.98	17.02	15.93	17.07	7.03	11.9
Merged-chr11-35694885-2	chr11	35694786	35694986	+	910.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 32 of 35)	ORR1G|LTR|ERVL-MaLR	-74609.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	5.65	5.03	10.27	1.21	8.18	3.76	9.97	11.69	22.62	16.07	33.16	14.72
Merged-chr3-123797205-2	chr3	123797102	123797302	+	910.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	-106350.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	12.52	7.29	19.4	15.28	54.82	31.04	31.22	34.26	1.18	0.0	0.0	1.25
Merged-chr12-78918412-3	chr12	78918319	78918519	+	910.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11481.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	18.57	16.1	17.68	11.26	16.36	24.46	2.66	18.08	23.21	13.56	20.1	10.02
Merged-chr1-89078906-3	chr1	89078821	89079021	+	910.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	8506.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	19.79	33.45	35.37	6.03	11.45	26.03	14.95	7.01	40.71	17.07	17.08	15.35
Merged-chr4-155721783-2	chr4	155721695	155721895	+	910.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 2 of 4)	B2_Mm2|SINE|B2	-13009.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	14.13	8.8	9.7	3.22	8.59	12.23	4.65	2.94	16.92	12.05	15.07	6.58
Merged-chr5-12044752-2	chr5	12044657	12044857	+	910.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126714.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	8.88	7.55	5.7	26.14	12.27	8.78	16.61	37.93	23.6	23.6	23.11	9.4
Merged-chr7-142344900-2	chr7	142344813	142345013	+	910.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	L1MD|LINE|L1	27346.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.86	9.31	14.83	13.67	0.0	3.45	0.33	2.89	10.23	21.09	23.11	14.72
Merged-chr1-119895154-1	chr1	119895054	119895254	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18014.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	3.23	4.02	5.7	13.67	13.09	2.82	13.95	8.5	5.9	8.54	8.04	5.95
Merged-chr11-116807316-1	chr11	116807216	116807416	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20730.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	7.27	8.3	7.99	1.61	13.09	9.72	2.66	10.82	0.0	1.0	1.0	1.88
Merged-chr8-126917697-1	chr8	126917597	126917797	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28224.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	1.62	4.02	7.42	3.22	15.14	4.39	10.96	9.7	6.69	5.52	9.04	3.76
Merged-chr16-73908654-1	chr16	73908554	73908754	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358493, intron 25 of 28)	intron (NM_001358493, intron 25 of 28)	433413.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	1.62	0.5	0.0	0.8	10.23	10.35	9.63	13.49	3.15	7.03	9.04	8.46
Merged-chr1-88586353-3	chr1	88586191	88586391	+	910.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	34774.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	11.71	8.3	14.26	1.61	14.32	11.29	5.31	6.73	14.75	11.05	12.06	6.89
Merged-chr6-126836859-3	chr6	126836765	126836965	+	910.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025358, intron 5 of 10)	RMER6BA|LTR|ERVK	12279.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	13.73	10.31	12.55	14.08	40.09	23.2	18.6	30.5	19.67	22.59	45.73	20.68
Merged-chr4-124802081-3	chr4	124801983	124802183	+	910.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-466.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	19.79	17.36	18.25	8.04	26.18	22.26	7.97	18.39	19.47	17.57	16.58	12.53
Merged-chr1-106320800-3	chr1	106320704	106320904	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	148935.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	10.9	15.34	14.26	12.87	13.09	14.42	12.95	13.43	15.74	14.56	27.13	7.83
Merged-chr14-30407385-3	chr14	30407303	30407503	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-50633.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	5.25	12.07	16.54	10.86	19.23	13.8	23.25	17.89	27.54	21.59	35.17	20.68
Merged-chr3-27234657-3	chr3	27234555	27234755	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	51651.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	11.71	11.07	10.84	5.23	16.36	29.79	15.28	9.2	43.27	42.68	15.58	9.71
Merged-chr5-90682049-3	chr5	90681951	90682151	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41524.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	8.48	9.31	17.11	27.35	31.09	20.07	35.21	45.31	15.54	14.06	35.17	7.52
Merged-chr11-116782820-3	chr11	116782732	116782932	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7325.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	46.84	46.78	18.83	23.33	48.68	69.93	18.27	17.78	22.23	17.07	16.08	5.33
Merged-chr15-66846077-3	chr15	66845949	66846149	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-14220.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	16.15	6.54	23.96	11.26	7.36	11.6	27.9	12.45	17.9	6.03	23.62	6.27
Merged-chr7-114194992-3	chr7	114194903	114195103	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	59677.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	14.54	12.07	15.97	12.07	22.09	22.58	13.95	13.74	28.32	24.1	22.11	6.89
Merged-chr2-129311736-3	chr2	129311627	129311827	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1755.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	18.98	21.38	18.25	5.23	17.59	28.85	14.28	6.45	26.75	21.09	31.66	15.04
Merged-chr15-94566068-3	chr15	94565973	94566173	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 10 of 11)	ORR1D2|LTR|ERVL-MaLR	22413.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	10.9	7.04	9.7	20.11	15.96	18.5	11.96	18.45	20.46	20.59	28.64	13.47
Merged-chr16-78235894-3	chr16	78235795	78235995	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	19559.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	12.92	12.83	7.99	11.26	15.55	35.43	9.63	20.66	28.32	29.62	22.11	5.01
Merged-chr5-114594870-3	chr5	114594750	114594950	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	26599.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	10.9	10.31	20.54	11.26	40.5	16.93	21.59	31.63	24.59	18.08	28.14	11.9
Merged-chr19-6074089-3	chr19	6073984	6074184	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081041, intron 2 of 9)	intron (NM_001081041, intron 2 of 9)	3103.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	21.4	14.09	17.11	10.05	28.23	10.66	12.95	11.55	16.92	15.57	21.1	11.28
Merged-chr3-81262969-2	chr3	81262862	81263062	+	910.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	226546.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	9.29	14.09	15.97	14.08	6.55	1.88	2.99	2.1	28.32	49.71	29.14	20.68
Merged-chrX-96133486-3	chrX	96133395	96133595	+	910.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	37450.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	11.71	10.56	11.98	13.27	12.68	9.72	4.65	10.99	18.29	17.57	17.08	5.01
Merged-chr17-24692589-3	chr17	24692485	24692685	+	910.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023040)	TTS (NM_023040)	-2636.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	13.33	11.57	9.7	14.48	22.91	14.11	12.62	16.77	12.19	16.07	19.6	10.34
Merged-chr17-23676050-3	chr17	23675949	23676149	+	910.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181821)	TTS (NM_181821)	1400.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	9.29	14.59	13.12	5.63	20.05	18.81	23.25	15.76	15.74	17.57	23.11	8.77
Merged-chr3-105789991-3	chr3	105789880	105790080	+	910.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	MTD|LTR|ERVL-MaLR	11401.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	11.31	14.34	13.69	16.89	9.82	21.32	11.29	19.32	16.52	22.59	43.21	22.24
Merged-chr7-121281064-2	chr7	121280967	121281167	+	910.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111229.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	10.9	3.77	3.99	4.42	30.27	7.84	8.97	22.65	17.11	10.54	19.09	14.1
Merged-chr10-6916732-3	chr10	6916659	6916859	+	910.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001170802)	TTS (NM_001170802)	63522.0	NM_001347225	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	20.19	13.08	21.68	31.77	18.82	12.23	2.99	20.41	12.0	15.57	14.07	9.4
Merged-chr3-58362767-3	chr3	58362677	58362877	+	910.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-51943.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	19.79	7.04	25.67	26.14	18.0	17.25	16.94	24.95	14.36	13.05	19.6	11.28
Merged-chr9-47727271-3	chr9	47727134	47727334	+	910.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	90974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	12.11	7.04	17.11	12.07	8.59	8.47	9.3	12.06	18.69	15.06	21.61	8.14
Merged-chr17-51833077-3	chr17	51832980	51833180	+	910.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009122)	promoter-TSS (NM_009122)	210.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	18.17	14.09	14.83	11.66	18.82	11.29	21.92	12.42	21.64	9.54	14.07	8.46
Merged-chr4-141617490-3	chr4	141617394	141617594	+	910.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151462, intron 2 of 5)	intron (NR_151462, intron 2 of 5)	1139.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	25.84	19.12	11.98	16.49	21.68	26.03	5.65	18.42	30.29	15.06	17.08	23.81
Merged-chr4-130549311-3	chr4	130549219	130549419	+	910.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025998, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	24717.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	16.15	10.31	17.11	7.64	9.0	17.87	4.98	8.58	16.33	20.08	12.06	12.53
Merged-chr15-93252078-2	chr15	93251984	93252184	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23095.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	6.46	12.07	22.25	13.27	4.5	9.09	7.31	15.14	8.85	2.51	7.54	10.65
Merged-chr16-92853798-1	chr16	92853698	92853898	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27724.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.46	4.53	1.71	0.8	7.77	4.39	4.32	11.94	7.47	7.03	10.05	2.82
Merged-chr10-14178936-1	chr10	14178836	14179036	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212557.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.83	1.76	6.28	0.8	10.23	4.7	11.29	10.54	2.36	3.01	1.0	3.45
Merged-chrX-150459195-3	chrX	150459073	150459273	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164683)	promoter-TSS (NM_001164683)	-23.0	NR_152724	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	14.13	6.79	17.68	27.75	20.86	19.76	17.61	27.73	23.6	13.05	32.16	13.47
Merged-chr3-86961319-1	chr3	86961219	86961419	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-25267.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.23	1.01	3.42	0.8	2.86	8.78	3.99	6.08	1.77	6.03	0.5	0.0
Merged-chr11-6188069-1	chr11	6187969	6188169	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	12382.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	6.86	7.04	11.98	6.03	2.45	15.99	3.65	6.45	6.88	5.52	4.52	2.51
Merged-chr10-79802580-3	chr10	79802490	79802690	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023128, intron 1 of 8)	MIR|SINE|MIR	9018.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	5.25	12.32	13.12	7.64	12.27	19.44	15.28	16.57	23.41	19.08	25.12	11.9
Merged-chr3-65319477-1	chr3	65319377	65319577	+	910.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289450, exon 9 of 15)	exon (NM_001289450, exon 9 of 15)	-16792.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	3.63	8.55	9.7	13.67	8.59	13.17	4.65	6.48	13.96	14.56	25.12	7.52
Merged-chr18-67769844-3	chr18	67769737	67769937	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5039.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	6.86	16.85	16.54	11.26	15.96	18.81	10.63	4.63	34.03	27.11	20.6	16.92
Merged-chr8-26612347-1	chr8	26612247	26612447	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212076.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.02	2.26	4.56	4.42	1.64	3.76	6.64	8.07	2.36	0.5	6.53	2.82
Merged-chr1-59899872-1	chr1	59899772	59899972	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13134.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.44	1.76	9.13	3.22	8.18	2.82	2.99	9.81	14.16	5.52	8.54	5.64
Merged-chr1-138145752-3	chr1	138145640	138145840	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	29386.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	16.56	18.11	18.25	21.32	18.0	16.31	9.97	18.59	15.34	14.06	14.57	12.22
Merged-chr3-132154428-1	chr3	132154328	132154528	+	910.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	69136.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	6.46	3.02	4.56	4.42	4.5	4.39	6.64	14.55	13.37	5.52	13.06	9.71
Merged-chr4-59471538-1	chr4	59471438	59471638	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178164)	TTS (NM_178164)	-32905.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	8.88	3.02	0.0	4.83	10.64	3.14	8.64	13.71	1.97	2.51	3.52	5.95
Merged-chr11-50369642-2	chr11	50369552	50369752	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8067.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	6.46	5.53	15.97	3.22	14.32	19.44	10.3	19.71	10.42	17.07	18.09	10.02
Merged-chr15-58616247-1	chr15	58616147	58616347	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	200779.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.04	8.8	1.71	0.8	19.64	6.9	4.32	14.78	3.34	5.52	2.01	2.51
Merged-chr4-8788810-1	chr4	8788710	8788910	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 2 of 36)	intron (NM_001355382, intron 2 of 36)	37486.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.81	1.51	1.14	1.21	13.5	5.96	8.3	7.65	3.15	6.03	6.53	8.77
Merged-chr10-44024945-1	chr10	44024845	44025045	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20099.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	4.04	4.02	4.56	0.0	4.5	10.35	0.33	7.09	4.52	8.54	10.55	4.39
Merged-chr1-135430165-1	chr1	135430065	135430265	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357578, intron 1 of 24)	CpG	326.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	18.17	10.06	11.98	0.8	4.91	5.64	8.3	2.92	18.88	20.59	17.59	12.53
Merged-chr6-116416392-1	chr6	116416292	116416492	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 7 of 13)	ORR1E|LTR|ERVL-MaLR	44786.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	11.31	2.77	2.28	3.62	0.82	8.78	4.32	10.77	4.72	10.04	10.55	12.84
Merged-chr11-31817660-1	chr11	31817560	31817760	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_102310)	TTS (NR_102310)	6887.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	6.86	3.02	1.14	5.63	13.5	11.29	10.3	12.56	5.51	4.52	1.51	3.45
Merged-chr9-85458575-2	chr9	85458460	85458660	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131410.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.23	4.78	1.14	17.29	2.86	10.98	9.3	9.0	19.47	7.03	22.61	12.53
Merged-chr3-41743640-3	chr3	41743456	41743656	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	938.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	7.67	9.56	12.55	3.22	4.5	9.09	7.64	9.25	8.85	12.05	10.05	14.1
Merged-chr2-144452847-1	chr2	144452747	144452947	+	910.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6433.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	4.85	3.27	3.42	5.23	9.82	1.57	4.65	0.93	9.83	5.52	13.06	5.01
Merged-chr5-137072747-1	chr5	137072647	137072847	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.4	2.01	3.99	3.22	2.45	2.2	6.64	7.96	5.51	5.02	6.03	4.39
Merged-chr1-90998666-4	chr1	90998588	90998788	+	909.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111312)	promoter-TSS (NM_001111312)	-39.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	15.34	8.05	7.99	14.48	27.41	22.89	21.59	24.84	18.29	20.59	29.14	19.42
Merged-chr13-60612340-3	chr13	60612229	60612429	+	909.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	10118.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	21.4	24.15	41.64	22.52	11.05	17.56	4.98	8.3	12.98	7.03	10.05	10.96
Merged-chr19-44313304-3	chr19	44313220	44313420	+	909.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	10149.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	11.31	12.07	15.4	14.48	8.59	13.17	11.96	15.14	19.47	16.07	28.14	11.28
Merged-chr17-65612690-3	chr17	65612602	65612802	+	909.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	CpG	853.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	14.94	18.36	13.69	8.45	20.86	19.13	17.61	15.03	24.59	16.57	23.62	22.87
Merged-chr2-125788460-3	chr2	125788344	125788544	+	909.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5574.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	20.19	12.83	13.69	14.08	23.73	33.87	18.27	18.11	14.75	19.58	12.06	8.46
Merged-chr3-22091269-3	chr3	22091174	22091374	+	909.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	14622.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	16.56	4.78	7.42	15.28	14.32	9.41	5.65	17.92	13.96	15.06	18.09	5.01
Merged-chr16-91841633-3	chr16	91841553	91841753	+	909.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	89977.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	18.17	7.55	21.68	21.72	18.0	17.56	16.61	20.13	18.69	14.56	26.13	8.77
Merged-chr13-113913822-3	chr13	113913662	113913862	+	909.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119254.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.06	6.04	5.7	17.29	17.59	11.6	32.55	36.59	29.7	13.05	36.68	30.7
Merged-chr2-84113804-3	chr2	84113690	84113890	+	909.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172564.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	25.84	11.07	38.79	42.63	57.68	38.26	35.87	61.74	10.23	11.55	8.54	12.53
Merged-chrX-155247881-3	chrX	155247771	155247971	+	909.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14572.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	12.52	19.37	7.42	10.05	20.05	18.5	20.93	20.22	14.95	17.57	25.63	9.08
Merged-chr7-101369091-1	chr7	101368991	101369191	+	909.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040111, intron 2 of 33)	MTD|LTR|ERVL-MaLR	-9031.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.42	2.77	11.41	6.84	22.5	10.35	11.29	9.22	3.93	7.03	5.02	1.25
Merged-chr11-98193142-5	chr11	98193004	98193204	+	909.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013634)	promoter-TSS (NM_013634)	189.0	NM_134027	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	33.52	30.18	25.1	16.09	24.14	32.93	20.93	19.68	40.91	42.68	33.67	18.8
Merged-chr3-144048054-3	chr3	144047941	144048141	+	909.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154291.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	44.82	32.95	18.25	12.47	29.46	41.08	11.96	10.12	31.08	48.7	24.62	10.96
Merged-chr17-8283129-3	chr17	8283028	8283228	+	909.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-685.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	11.71	11.07	7.99	17.7	11.86	8.47	25.24	7.71	13.57	14.56	9.55	6.58
Merged-chr17-33865628-3	chr17	33865553	33865753	+	909.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21080.0	NR_128569	104796139.0		NR_128569	ENSMUSG00000098621	Gm27740	Mir6967-2|mmu-mir-6967-2	predicted gene, 27740	ncRNA	14.94	11.57	3.42	4.83	8.18	18.5	8.3	8.33	18.29	15.06	9.04	10.02
Merged-chr18-76326620-2	chr18	76326519	76326719	+	909.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64174.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	7.27	17.1	15.97	11.66	11.05	27.28	10.96	10.4	6.1	1.51	2.51	2.19
Merged-chrX-167338159-3	chrX	167338063	167338263	+	909.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-7592.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	13.33	15.85	12.55	14.48	13.09	6.9	4.32	9.7	17.51	17.07	7.54	6.89
Merged-chrX-12160076-3	chrX	12159945	12160145	+	909.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	301.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	16.15	14.59	4.56	8.45	11.86	12.54	9.63	7.91	6.88	16.07	10.55	10.34
Merged-chr7-90215400-3	chr7	90215286	90215486	+	909.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	50046.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	8.08	5.03	17.11	9.65	11.86	12.86	22.26	7.88	12.98	6.03	20.6	5.33
Merged-chr5-72656795-1	chr5	72656695	72656895	+	909.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081205, intron 1 of 5)	intron (NM_001081205, intron 1 of 5)	8999.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	2.42	5.28	1.71	6.03	4.09	5.33	9.63	4.68	3.93	3.01	9.04	7.52
Merged-chr7-38167941-3	chr7	38167834	38168034	+	909.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15283.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	9.69	11.07	17.11	8.45	24.96	15.99	18.93	21.79	31.27	36.15	43.21	15.66
Merged-chr5-75156327-3	chr5	75156244	75156444	+	909.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001083316, exon 1 of 23)	5' UTR (NM_001083316, exon 1 of 23)	178.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	17.36	10.56	34.23	14.08	9.41	4.7	4.65	14.64	19.87	15.57	22.61	10.96
Merged-chr4-151999649-3	chr4	151999550	151999750	+	909.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3471.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	15.34	7.29	19.4	18.9	19.64	12.23	16.28	25.15	22.62	21.59	31.66	11.59
Merged-chr19-3767921-4	chr19	3767895	3768095	+	909.616699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167889, intron 1 of 10)	CpG	574.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	10.9	11.57	5.13	3.22	11.05	11.92	11.96	7.12	12.98	20.59	5.53	14.41
Merged-chr2-90478307-3	chr2	90478213	90478413	+	909.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L1MB5|LINE|L1	861.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	13.73	8.8	16.54	16.09	28.23	21.32	19.93	27.98	22.62	20.59	18.09	3.45
Merged-chr11-94405438-1	chr11	94405338	94405538	+	909.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12462.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	2.83	0.5	3.42	2.41	20.86	9.09	27.57	20.58	5.7	4.02	13.06	5.01
Merged-chr10-20879716-2	chr10	20879623	20879823	+	909.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72824.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	1.21	6.54	2.28	1.61	6.14	2.82	7.97	12.34	13.37	10.04	13.06	19.42
Merged-chr10-66857459-3	chr10	66857337	66857537	+	909.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62947.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	11.71	14.09	16.54	15.28	20.86	21.95	5.31	17.97	19.67	23.1	12.06	5.01
Merged-chr7-24300968-3	chr7	24300847	24301047	+	909.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199321)	TTS (NM_001199321)	-1398.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	8.48	8.3	15.97	14.08	9.82	8.78	20.59	11.13	18.69	6.03	14.07	5.95
Merged-chr16-93888646-3	chr16	93888498	93888698	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028083, intron 5 of 13)	ORR1D1|LTR|ERVL-MaLR	4697.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	7.67	9.31	5.7	4.02	13.09	5.96	2.33	10.37	25.37	29.62	26.63	20.36
Merged-chr12-40271397-3	chr12	40271297	40271497	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	48033.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	18.57	19.37	15.97	19.71	12.27	16.93	14.95	7.04	16.92	17.57	17.59	12.84
Merged-chr9-107296169-3	chr9	107296065	107296265	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-494.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	7.27	15.85	12.55	5.23	23.32	37.32	12.29	10.46	24.19	24.1	29.14	15.66
Merged-chr1-64134640-3	chr1	64134563	64134763	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur2|LINE|L1	-13274.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	9.69	3.27	25.1	24.94	19.64	20.38	35.87	33.14	26.16	23.6	59.8	19.42
Merged-chr10-77517205-3	chr10	77517092	77517292	+	909.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1379.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	12.52	16.6	10.27	11.26	19.64	16.62	8.64	16.54	21.64	20.08	20.1	16.6
Merged-chr2-58167862-2	chr2	58167765	58167965	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	3891.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	15.96	5.96	13.29	13.99	15.93	14.06	11.56	4.39
Merged-chr1-149955677-3	chr1	149955573	149955773	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	5617.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	9.29	9.31	21.68	14.08	15.96	20.07	27.9	50.16	19.87	16.57	27.13	17.23
Merged-chr7-137609987-2	chr7	137609885	137610085	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	172311.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	12.92	5.79	6.85	12.07	16.36	34.18	12.95	24.56	3.93	0.5	5.02	8.77
Merged-chr7-90054996-3	chr7	90054899	90055099	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25840.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	9.29	11.07	28.52	11.66	10.23	14.11	9.97	18.62	19.47	8.03	18.09	14.72
Merged-chr16-58686331-1	chr16	58686231	58686431	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16123.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	5.65	5.53	6.28	12.47	11.86	10.98	13.62	11.1	3.74	10.54	5.02	13.78
Merged-chr2-143035563-2	chr2	143035480	143035680	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27489.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	8.88	11.82	11.41	10.46	5.32	11.29	12.62	13.04	8.65	17.07	14.07	11.9
Merged-chr15-59799297-1	chr15	59799197	59799397	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-4338.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.44	3.27	6.85	4.83	10.23	5.33	10.63	11.94	5.31	6.03	9.04	6.27
Merged-chr14-22817553-1	chr14	22817453	22817653	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-274755.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	3.23	5.53	1.71	5.23	9.0	17.56	9.63	6.34	4.33	7.03	12.06	3.13
Merged-chr6-146668703-1	chr6	146668603	146668803	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11485.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	1.62	0.5	0.0	4.02	5.32	12.54	4.98	8.3	1.18	4.02	1.51	0.94
Merged-chr2-165947782-3	chr2	165947698	165947898	+	909.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44839.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	12.92	12.58	7.99	10.86	18.82	12.54	14.95	13.32	25.96	32.13	47.74	25.69
Merged-chr5-147957228-3	chr5	147957124	147957324	+	909.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029920)	promoter-TSS (NM_029920)	-96.0	NM_001359503	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	13.73	13.08	13.12	22.12	18.82	20.07	13.62	16.4	27.93	15.57	31.66	19.11
Merged-chr4-47234982-3	chr4	47234817	47235017	+	909.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 2 of 39)	intron (NM_009928, intron 2 of 39)	26905.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	8.88	4.78	5.13	6.03	9.82	9.09	7.97	12.06	12.39	16.07	20.1	11.9
Merged-chr2-164007100-3	chr2	164007000	164007200	+	909.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018753, intron 1 of 5)	RLTR26B_MM|LTR|ERVK	11903.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	8.88	11.57	14.83	24.13	18.41	19.44	8.3	21.9	17.9	11.05	22.61	16.6
Merged-chr16-91411010-3	chr16	91410918	91411118	+	909.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	4783.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	10.09	10.31	10.27	14.08	7.77	15.99	25.58	22.68	15.74	8.54	21.1	13.78
Merged-chr16-30066675-7	chr16	30066582	30066782	+	909.392883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008235, intron 3 of 3)	CpG	1325.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	11.71	14.59	8.56	10.46	9.41	21.32	15.28	21.79	14.75	15.06	12.06	10.34
Merged-chr10-78160144-3	chr10	78160052	78160252	+	909.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9616.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	14.54	13.83	10.27	9.65	11.86	16.31	5.98	11.75	25.57	12.05	28.14	17.86
Merged-chr4-115731769-3	chr4	115731667	115731867	+	909.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6306.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	19.79	10.56	17.68	16.89	9.0	15.68	14.28	10.35	30.88	29.12	11.05	12.53
Merged-chr10-84286320-3	chr10	84286207	84286407	+	909.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154164.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	11.71	9.31	30.8	28.15	12.27	4.39	11.29	20.41	16.13	2.01	15.07	15.04
Merged-chr11-111210733-3	chr11	111210641	111210841	+	909.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144577.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	12.52	7.8	23.96	30.97	23.32	18.5	16.94	16.09	11.41	6.03	15.07	9.08
Merged-chr1-64933144-2	chr1	64933037	64933237	+	909.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23687.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.81	3.52	0.0	0.8	13.5	12.23	12.62	8.07	9.64	15.06	14.07	17.23
Merged-chr3-127895857-3	chr3	127895763	127895963	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	460.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	15.75	22.39	9.7	10.46	17.18	17.25	24.25	13.43	20.85	20.59	26.63	11.9
Merged-chr6-120903683-3	chr6	120903624	120903824	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	13100.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	24.23	14.59	25.67	20.91	38.86	16.93	17.94	27.36	10.42	11.55	9.55	9.08
Merged-chr1-127976719-3	chr1	127976612	127976812	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	107939.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	8.88	8.8	15.97	28.15	18.41	23.2	27.9	40.09	27.34	18.08	41.71	15.66
Merged-chr19-5512376-3	chr19	5512241	5512441	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1824.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	13.73	15.85	5.13	10.86	7.36	15.68	8.3	9.7	19.08	5.02	5.02	6.58
Merged-chr13-45693689-3	chr13	45693582	45693782	+	909.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	186238.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	15.75	16.1	23.96	17.7	21.27	21.01	8.3	25.15	19.47	8.54	19.6	26.31
Merged-chr5-118647606-3	chr5	118647525	118647725	+	909.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	86906.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	36.34	21.63	51.91	39.82	37.23	41.08	20.93	51.5	10.03	14.06	16.58	19.74
Merged-chr19-29708246-3	chr19	29708164	29708364	+	909.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029993)	TTS (NM_029993)	10323.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	16.15	15.59	16.54	9.65	6.14	29.79	9.3	9.31	11.21	12.05	13.06	5.95
Merged-chr10-20590292-3	chr10	20590201	20590401	+	909.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-41973.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	23.02	31.44	39.93	54.3	21.27	21.95	18.6	59.5	10.82	12.05	53.77	10.34
Merged-chr5-75874703-1	chr5	75874603	75874803	+	909.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103725.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	8.88	4.28	10.27	6.03	16.77	6.27	14.62	14.58	0.2	0.0	0.5	2.51
Merged-chr11-116827991-3	chr11	116827812	116828012	+	909.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026280, exon 1 of 4)	exon (NM_026280, exon 1 of 4)	134.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	13.73	12.83	7.42	6.03	13.09	13.17	5.65	13.18	9.05	6.03	5.02	11.59
Merged-chrX-101907416-3	chrX	101907291	101907491	+	909.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	58006.0	NM_001163610	100042480.0	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|Gm10456	NHS-like 2	protein-coding	10.5	5.79	11.41	22.12	18.82	14.74	13.29	22.82	15.54	16.07	15.07	26.31
Merged-chr1-72212270-3	chr1	72212175	72212375	+	909.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357488)	promoter-TSS (NM_001357488)	32.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	23.82	23.39	17.11	25.34	17.59	15.99	12.95	22.65	16.72	17.07	24.62	9.08
Merged-chr2-154220117-3	chr2	154220023	154220223	+	909.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012392, intron 15 of 15)	intron (NM_001012392, intron 15 of 15)	-3619.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	12.92	7.04	10.84	12.47	28.64	18.19	11.96	15.53	16.52	15.57	24.12	12.22
Merged-chr9-109058344-4	chr9	109058279	109058479	+	909.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026381)	TTS (NM_026381)	872.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	7.27	13.08	9.7	3.22	7.36	22.89	7.31	4.32	13.37	17.07	11.56	10.02
Merged-chr8-25448128-3	chr8	25448022	25448222	+	909.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-70637.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	10.09	13.33	5.7	15.28	17.59	17.87	11.29	19.51	15.54	9.54	20.6	8.77
Merged-chr19-5727978-3	chr19	5727944	5728144	+	909.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181452)	TTS (NM_181452)	1622.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	14.54	12.83	13.69	4.42	9.41	13.48	5.31	4.93	23.21	27.11	14.07	11.9
Merged-chr11-11689097-3	chr11	11689008	11689208	+	909.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	-1069.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	15.34	14.09	10.27	17.7	21.68	13.8	15.94	22.71	14.95	10.54	17.59	9.08
Merged-chr8-108730099-3	chr8	108729998	108730198	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	15454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.67	5.53	18.83	14.48	21.27	6.9	5.98	13.93	16.92	12.55	14.07	11.59
Merged-chr2-152707730-3	chr2	152707587	152707787	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159551, exon 13 of 13)	3' UTR (NM_001159551, exon 13 of 13)	20539.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	6.46	16.35	16.54	15.69	12.27	17.87	5.31	9.06	14.16	10.04	13.57	14.41
Merged-chr9-61946054-3	chr9	61945984	61946184	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024245, intron 1 of 22)	intron (NM_024245, intron 1 of 22)	715.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	13.33	14.09	15.4	31.77	11.45	10.98	11.29	14.07	13.96	11.05	9.04	11.9
Merged-chr18-34538347-3	chr18	34538244	34538444	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3984.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	15.34	8.55	2.28	18.5	13.91	18.19	1.66	12.93	23.8	21.09	30.65	11.59
Merged-chr3-148988628-1	chr3	148988528	148988728	+	909.142883	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-33993.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.65	4.53	2.85	2.41	5.73	9.41	13.95	10.12	7.67	2.51	7.03	4.07
Merged-chr4-106429336-3	chr4	106429252	106429452	+	909.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183225, intron 62 of 67)	intron (NM_183225, intron 62 of 67)	34973.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	25.04	6.79	21.68	28.15	29.46	13.8	31.89	29.1	12.39	8.54	19.6	8.77
Merged-chr4-108405954-2	chr4	108405862	108406062	+	909.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024198, intron 1 of 2)	intron (NM_024198, intron 1 of 2)	751.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	5.25	3.77	7.42	8.04	6.55	15.37	9.3	11.3	15.74	13.56	16.58	13.47
Merged-chr15-36695776-3	chr15	36695677	36695877	+	909.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-86804.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	10.9	9.81	14.83	15.28	20.86	5.33	10.3	16.65	26.95	28.62	29.65	14.1
Merged-chr5-100624999-3	chr5	100624886	100625086	+	909.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49270.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	11.71	11.82	10.84	14.48	16.36	19.13	16.61	12.95	23.21	14.06	17.08	9.08
Merged-chr15-59041800-3	chr15	59041679	59041879	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40247.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	12.92	4.28	12.55	20.91	20.86	20.07	17.94	27.76	21.24	12.05	30.15	12.22
Merged-chr3-65680776-3	chr3	65680669	65680869	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	14541.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	6.06	11.82	17.11	3.22	3.27	10.98	10.96	15.39	34.22	17.07	22.61	11.9
Merged-chr1-191964357-3	chr1	191964239	191964439	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13031.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	18.98	16.1	16.54	14.88	15.96	13.48	18.93	20.8	12.59	9.54	7.54	7.52
Merged-chr5-53997064-3	chr5	53996962	53997162	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1461.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	8.08	9.81	25.1	10.86	8.59	5.64	13.95	11.55	16.52	4.52	19.6	6.27
Merged-chr5-42978586-2	chr5	42978487	42978687	+	909.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-254876.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	8.48	5.53	4.56	4.83	9.0	9.09	10.63	15.39	18.49	8.54	18.59	3.76
Merged-chr4-129821441-3	chr4	129821310	129821510	+	909.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	702.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	10.5	9.06	7.42	16.09	7.36	13.17	13.95	10.99	17.9	23.6	18.59	5.64
Merged-chr11-107417412-3	chr11	107417319	107417519	+	909.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	53301.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	8.08	11.32	21.11	8.85	22.5	19.44	13.62	15.45	14.95	20.59	22.11	11.9
Merged-chr5-115327725-3	chr5	115327620	115327820	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036616, intron 1 of 4)	CpG	543.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	23.42	22.39	6.85	10.05	25.77	27.59	20.26	16.18	35.4	26.61	33.16	12.53
Merged-chr1-45860596-3	chr1	45860498	45860698	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64996.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	16.15	10.56	18.25	26.55	22.91	19.13	27.24	30.31	14.55	16.07	17.08	16.29
Merged-chr6-128850105-3	chr6	128850020	128850220	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001254946, exon 3 of 3)	exon (NM_001254946, exon 3 of 3)	-23805.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	7.27	6.04	11.98	12.87	12.27	16.31	7.31	13.04	19.08	8.03	14.57	9.71
Merged-chr5-64289421-3	chr5	64289306	64289506	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59049.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	11.31	11.57	4.56	16.49	15.96	16.93	9.3	10.88	18.1	17.07	22.11	12.22
Merged-chrX-102115903-3	chrX	102115808	102116008	+	909.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3557.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	17.77	10.56	8.56	10.05	22.5	16.62	15.28	27.03	25.57	33.14	31.15	13.16
Merged-chr17-21449876-3	chr17	21449764	21449964	+	909.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-510.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	21.8	8.05	8.56	18.1	14.73	18.19	11.96	16.57	24.59	28.12	30.65	11.59
Merged-chr19-32681089-3	chr19	32680997	32681197	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026487, intron 8 of 9)	intron (NM_026487, intron 8 of 9)	31201.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	4.44	13.83	11.98	6.44	10.64	18.81	7.31	7.79	18.29	15.06	16.08	5.64
Merged-chr7-38214777-1	chr7	38214677	38214877	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	13217.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	4.04	5.28	10.27	2.01	22.5	11.6	13.62	18.06	4.72	5.02	5.02	5.64
Merged-chr1-65111133-2	chr1	65111013	65111213	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	RLTR33|LTR|ERVK	-7750.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	2.83	3.52	7.99	10.46	6.55	7.21	3.99	5.78	12.0	11.05	7.54	5.33
Merged-chr4-59454239-1	chr4	59454139	59454339	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15606.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.25	3.52	2.28	4.83	11.05	4.08	2.66	7.01	6.1	0.5	3.01	2.19
Merged-chr1-54927519-3	chr1	54927393	54927593	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1106.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	14.13	4.53	2.85	16.09	9.0	12.86	7.64	10.63	22.23	4.52	20.1	8.14
Merged-chr5-66174697-1	chr5	66174597	66174797	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040695, intron 2 of 2)	intron (NR_040695, intron 2 of 2)	16638.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	3.23	8.8	4.56	1.61	9.82	10.03	4.32	12.03	2.36	1.0	3.01	1.57
Merged-chr17-80997388-2	chr17	80997294	80997494	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	52762.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	2.83	2.77	4.56	8.45	15.55	3.45	11.96	14.58	11.8	9.04	12.56	9.4
Merged-chr18-55238322-2	chr18	55238206	55238406	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-245715.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.42	4.78	6.28	8.45	15.55	11.6	14.28	15.06	8.65	18.08	27.13	9.71
Merged-chr9-77966421-1	chr9	77966321	77966521	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	49056.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.86	2.01	6.85	6.03	5.73	4.08	9.3	8.19	4.52	7.03	4.02	4.39
Merged-chr11-114996857-2	chr11	114996660	114996860	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_134158)	TTS (NM_134158)	5120.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	1.01	1.14	0.4	0.82	2.51	0.66	0.14	3.93	1.0	0.5	2.51
Merged-chr10-80329455-1	chr10	80329355	80329555	+	909.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	18.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	7.67	5.53	3.99	1.21	10.64	6.59	4.65	4.85	8.46	8.03	19.6	10.65
Merged-chr14-50824297-3	chr14	50824173	50824373	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009351, exon 55 of 55)	exon (NM_009351, exon 55 of 55)	16357.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	12.92	7.55	2.28	9.65	4.09	7.21	5.31	11.64	51.93	36.15	53.77	38.53
Merged-chr3-142528641-1	chr3	142528541	142528741	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1695.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	11.31	14.84	1.14	0.4	9.82	25.71	5.98	0.0	11.6	5.52	7.03	1.25
Merged-chr15-84923876-2	chr15	84923794	84923994	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016714, intron 1 of 7)	CpG	466.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	9.29	18.86	21.11	6.44	7.77	14.11	12.62	7.23	19.08	29.12	16.58	14.1
Merged-chrUn_JH584304-68208-1	chrUn_JH584304	68108	68308	+	909.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-8519.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.8	14.56	7.54	13.78
Merged-chr2-115765053-3	chr2	115764951	115765151	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207264, intron 10 of 10)	intron (NM_207264, intron 10 of 10)	126326.0	NR_035476	100316703.0		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA	5.65	18.11	11.98	5.63	28.23	32.61	35.87	33.45	43.47	30.13	58.79	27.25
Merged-chr10-26777735-1	chr10	26777635	26777835	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	5223.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.04	2.77	1.71	2.82	11.86	5.96	2.66	7.79	1.57	1.51	2.51	1.25
Merged-chr4-32392957-1	chr4	32392857	32393057	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-24478.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.06	4.53	1.14	5.63	3.27	4.39	8.3	6.14	1.57	3.01	7.54	3.76
Merged-chr4-59294836-3	chr4	59294736	59294936	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	34785.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	9.69	10.82	14.83	13.67	22.91	23.2	18.93	29.44	21.83	15.57	17.08	13.47
Merged-chr1-192981961-1	chr1	192981861	192982061	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001301370, intron 3 of 8)	intron (NM_001301370, intron 3 of 8)	53814.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	6.46	6.29	18.83	14.88	0.0	0.0	0.0	1.18	8.65	7.53	13.57	6.89
Merged-chr3-8974007-3	chr3	8973923	8974123	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9877.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.02	4.53	15.4	14.08	7.77	5.02	7.64	9.45	31.08	10.04	37.69	32.89
Merged-chr13-28823670-1	chr13	28823570	28823770	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	ID_B1|SINE|B4	61752.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	8.08	2.52	2.28	1.21	4.91	7.21	13.95	10.91	3.74	3.01	1.51	0.63
Merged-chr18-69415668-3	chr18	69415595	69415795	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	69535.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	8.48	10.56	1.71	9.65	14.32	17.56	28.23	19.29	10.03	19.08	14.07	16.29
Merged-chr13-89838858-1	chr13	89838758	89838958	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96346.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.44	1.26	3.42	4.83	6.95	2.2	12.95	12.48	5.11	1.51	8.04	3.13
Merged-chr4-87826539-3	chr4	87826443	87826643	+	908.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-20220.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	10.9	8.55	18.25	16.89	7.77	10.03	13.29	19.79	29.5	26.11	57.79	34.46
Merged-chrX-96300526-3	chrX	96300443	96300643	+	908.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7105.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	8.88	14.59	14.83	50.27	20.05	22.58	46.17	43.74	22.23	12.05	29.14	19.42
Merged-chr5-72601263-3	chr5	72601172	72601372	+	908.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31_Mur|LTR|ERVK	-13722.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	12.11	18.86	3.99	15.69	15.55	21.32	14.95	17.75	16.13	11.05	10.05	14.1
Merged-chr6-143050375-3	chr6	143050263	143050463	+	908.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	49789.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	7.67	10.82	17.68	18.9	11.05	18.19	14.28	35.92	17.31	11.05	18.09	12.53
Merged-chr18-64886686-3	chr18	64886579	64886779	+	908.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1077.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	14.54	19.12	13.69	29.36	10.64	17.56	13.95	23.44	30.29	21.59	40.2	15.66
Merged-chr15-102246362-3	chr15	102246229	102246429	+	908.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001042727, exon 1 of 8)	5' UTR (NM_001042727, exon 1 of 8)	171.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	21.8	12.32	8.56	9.65	11.45	11.6	10.96	7.07	12.39	19.08	7.03	11.59
Merged-chr7-132713629-3	chr7	132713548	132713748	+	908.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63268.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	14.13	12.83	9.7	24.13	21.27	12.54	19.6	20.47	15.54	11.05	17.08	14.41
Merged-chr11-70874323-3	chr11	70874219	70874419	+	908.92218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	29558.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	22.21	15.09	26.24	12.87	30.68	18.5	7.31	19.99	25.37	16.57	19.09	8.77
Merged-chr16-38131283-2	chr16	38131191	38131391	+	908.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	-42031.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	13.73	10.56	15.97	23.73	19.23	12.23	11.63	9.73	4.52	6.53	9.55	2.51
Merged-chr19-29168157-3	chr19	29168058	29168258	+	908.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32879.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	10.5	16.1	36.51	17.7	19.23	9.41	8.64	16.35	19.28	19.58	23.11	9.71
Merged-chr2-11524035-3	chr2	11523948	11524148	+	908.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-21958.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	16.15	27.67	32.52	20.51	18.82	22.89	7.31	5.19	30.49	29.62	39.19	25.69
Merged-chr17-31834866-2	chr17	31834769	31834969	+	908.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	20935.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	12.92	15.85	14.26	10.86	2.05	0.63	0.33	1.12	20.46	18.08	23.11	10.34
Merged-chr8-13600307-3	chr8	13600199	13600399	+	908.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-37838.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	11.31	11.82	18.83	11.66	33.14	14.74	27.57	37.46	14.16	10.04	26.13	8.77
Merged-chr2-52859232-3	chr2	52859133	52859333	+	908.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	1365.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	21.4	6.79	13.69	7.24	16.36	15.37	23.25	21.53	21.05	19.08	9.04	11.28
Merged-chr2-163676978-3	chr2	163676868	163677068	+	908.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-17069.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	28.67	27.92	23.96	30.97	30.27	20.38	11.96	28.71	17.51	11.05	12.06	17.54
Merged-chr11-51677976-3	chr11	51677881	51678081	+	908.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10653.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	16.15	14.09	13.69	19.71	13.09	24.15	13.95	11.52	14.95	12.55	16.58	12.84
Merged-chrX-107143405-3	chrX	107143313	107143513	+	908.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-5514.0	NM_001122596	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	22.21	8.3	7.99	18.9	18.41	23.2	11.29	26.89	9.05	12.55	14.07	5.33
Merged-chr2-156720135-3	chr2	156720030	156720230	+	908.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042488)	promoter-TSS (NM_001042488)	779.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	30.69	22.13	23.39	15.28	27.41	25.71	9.63	9.14	33.04	37.66	20.1	9.4
Merged-chr2-132018366-2	chr2	132018252	132018452	+	908.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	11636.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	8.48	5.53	11.41	11.26	18.82	13.8	12.95	12.64	11.21	10.04	18.59	5.64
Merged-chr7-82744513-2	chr7	82744410	82744610	+	908.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_046004, exon 3 of 4)	non-coding (NR_046004, exon 3 of 4)	11134.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	13.33	6.04	7.42	17.29	9.82	10.98	18.27	20.36	4.92	2.01	5.53	2.19
Merged-chr1-180432055-3	chr1	180431958	180432158	+	908.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081227)	TTS (NM_001081227)	51446.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	8.88	10.56	2.28	6.84	10.23	16.62	16.28	14.86	26.16	31.13	32.16	15.04
Merged-chr19-28777942-3	chr19	28777873	28778073	+	908.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-57193.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	8.08	13.83	13.69	21.72	11.45	15.37	24.91	16.46	19.08	15.06	17.59	15.04
Merged-chr11-20899143-3	chr11	20899046	20899246	+	908.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68038.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	18.17	15.59	10.84	9.25	18.41	21.01	15.28	18.48	16.33	16.07	22.61	13.78
Merged-chr10-75586461-3	chr10	75586361	75586561	+	908.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008116)	TTS (NM_008116)	-2920.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	6.06	12.32	13.12	8.85	14.32	17.87	5.98	9.93	13.77	6.03	15.07	4.7
Merged-chr12-12316921-3	chr12	12316826	12317026	+	908.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	MLTR14|LTR|ERV1	54787.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	12.11	15.85	21.68	14.88	17.59	16.93	17.27	30.06	19.47	13.56	12.56	21.62
Merged-chr18-34373565-5	chr18	34373568	34373768	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007874)	promoter-TSS (NM_007874)	-253.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	9.69	9.31	7.99	4.02	11.45	3.45	11.29	10.77	10.03	11.05	10.55	11.9
Merged-chr4-15269792-3	chr4	15269703	15269903	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3983.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	5.25	9.56	6.85	22.52	11.45	11.92	21.59	22.91	17.51	14.06	17.08	9.4
Merged-chr10-86920818-3	chr10	86920732	86920932	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 30 of 68)	intron (NM_138673, intron 30 of 68)	87110.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	10.5	4.78	4.56	11.66	19.64	32.93	31.22	30.03	12.98	19.08	22.61	11.9
Merged-chr19-21476967-3	chr19	21476878	21477078	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4317.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	11.71	8.55	1.14	20.91	44.59	49.23	53.15	60.59	34.62	29.12	24.62	30.7
Merged-chr15-67714405-3	chr15	67714301	67714501	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	487632.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	12.11	15.85	4.56	5.23	46.64	66.16	36.87	25.09	29.31	38.66	20.1	6.58
Merged-chr17-57105415-3	chr17	57105383	57105583	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	98.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	2.83	2.77	3.42	4.02	7.36	6.27	4.98	5.07	19.47	41.67	11.56	3.45
Merged-chr7-90052393-1	chr7	90052293	90052493	+	908.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23234.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.81	1.01	2.28	0.0	0.82	2.51	1.99	0.42	15.34	23.6	15.07	5.95
Merged-chr4-102930862-3	chr4	102930755	102930955	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 17 of 23)	intron (NM_144906, intron 17 of 23)	-55524.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	21.0	23.14	26.24	39.42	24.14	27.91	29.9	48.67	13.37	2.51	17.59	7.52
Merged-chr2-59121250-3	chr2	59121145	59121345	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	39438.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	7.27	8.3	1.71	8.04	18.41	14.74	10.3	14.36	15.93	22.09	25.12	21.93
Merged-chr8-128435966-2	chr8	128435864	128436064	+	908.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	76723.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	13.33	10.06	17.11	14.48	16.36	8.15	17.61	32.3	2.16	3.01	10.55	5.01
Merged-chr16-29991285-3	chr16	29991134	29991334	+	908.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12110.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	5.25	8.55	9.13	4.83	13.91	9.09	8.97	7.46	8.06	2.51	9.55	7.52
Merged-chr7-5060311-3	chr7	5060215	5060415	+	908.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290432, exon 6 of 6)	exon (NM_001290432, exon 6 of 6)	-1828.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	12.52	10.06	12.55	11.26	17.59	11.6	9.3	8.13	12.0	17.57	15.07	8.14
Merged-chr12-30282695-2	chr12	30282575	30282775	+	908.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324521, intron 6 of 15)	intron (NM_001324521, intron 6 of 15)	90700.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	14.94	9.56	13.69	9.25	18.82	7.53	5.65	11.02	0.59	1.0	2.51	1.88
Merged-chr14-61052392-3	chr14	61052279	61052479	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-5524.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	12.92	10.56	18.25	14.88	7.77	7.53	11.96	11.5	27.73	21.59	21.1	19.42
Merged-chr5-25010565-3	chr5	25010448	25010648	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-14795.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	14.13	12.07	10.84	10.46	23.73	24.15	5.65	21.25	17.31	24.6	24.12	23.49
Merged-chr10-12997259-3	chr10	12997121	12997321	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11229.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	22.21	9.56	8.56	9.65	13.91	24.46	9.97	22.35	17.9	13.56	23.11	8.14
Merged-chr14-61687891-3	chr14	61687795	61687995	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5522.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	11.71	15.59	15.97	20.11	14.32	10.03	11.29	10.43	19.67	12.05	24.62	10.65
Merged-chr12-8493511-3	chr12	8493402	8493602	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6507.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	18.17	17.86	22.82	24.94	14.73	19.13	10.96	27.76	13.57	11.55	14.07	11.28
Merged-chr18-20816653-3	chr18	20816561	20816761	+	908.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361188)	TTS (NM_001361188)	-70257.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	13.73	10.31	28.52	5.63	21.68	8.78	12.62	24.06	21.44	16.57	26.13	15.35
Merged-chrX-101770498-3	chrX	101770397	101770597	+	908.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-24159.0	NM_001359671	382231.0	Mm.328112	NM_001359671	ENSMUSG00000046774	8030474K03Rik	Gm1142	RIKEN cDNA 8030474K03 gene	protein-coding	14.94	10.31	16.54	16.49	28.64	21.64	22.26	18.14	19.47	4.52	16.08	15.04
Merged-chr9-71160929-3	chr9	71160822	71161022	+	908.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	1711.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	15.34	7.29	10.84	19.71	11.05	16.31	12.62	10.99	16.52	18.58	19.6	11.28
Merged-chr2-120663894-3	chr2	120663810	120664010	+	908.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54315.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	19.79	15.34	29.66	18.1	20.46	12.86	20.93	23.22	14.95	9.54	10.55	10.34
Merged-chrX-7308407-3	chrX	7308312	7308512	+	908.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	10946.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	21.0	13.33	10.84	4.02	8.59	19.13	14.28	10.68	19.87	24.1	19.09	5.01
Merged-chr13-63253360-3	chr13	63253255	63253455	+	908.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	13326.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	10.09	12.07	22.25	15.28	13.09	15.37	12.62	28.21	22.23	18.58	24.12	7.52
Merged-chr8-13624983-1	chr8	13624883	13625083	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	52604.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.04	6.29	7.99	5.23	13.91	6.9	12.95	19.71	4.13	9.54	4.02	2.51
Merged-chr13-91362109-1	chr13	91362009	91362209	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25976.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	4.44	6.29	3.99	6.03	16.77	10.98	7.31	10.29	8.65	5.52	7.54	4.07
Merged-chr3-40798683-2	chr3	40798585	40798785	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1266.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	7.27	2.26	10.84	1.21	8.59	10.66	2.33	7.43	12.59	17.57	19.09	4.07
Merged-chrX-85770933-3	chrX	85770832	85771032	+	908.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 1 of 19)	intron (NM_212444, intron 1 of 19)	5887.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	10.5	12.58	18.25	22.93	21.68	24.15	7.64	23.52	32.06	17.07	23.11	8.46
Merged-chr2-68859879-1	chr2	68859779	68859979	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1562.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	7.67	1.26	7.42	2.82	0.0	10.66	7.97	9.67	10.42	6.53	7.03	3.13
Merged-chr9-106421960-3	chr9	106421873	106422073	+	908.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7438.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	19.79	11.07	12.55	5.23	13.5	15.68	9.97	12.95	16.72	15.06	13.57	8.46
Merged-chrX-159254750-3	chrX	159254677	159254877	+	908.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1005.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	24.23	14.34	13.12	18.1	17.59	15.68	16.61	19.57	19.87	12.05	33.67	10.02
Merged-chr15-76239275-3	chr15	76239173	76239373	+	908.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163576, intron 8 of 9)	intron (NM_001163576, intron 8 of 9)	4167.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	17.36	19.37	15.4	16.89	11.05	19.44	8.97	13.65	23.6	20.08	12.56	18.17
Merged-chr11-100356245-3	chr11	100356164	100356364	+	908.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-123.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	29.88	26.91	11.98	8.45	23.73	36.69	21.59	12.53	13.77	20.59	17.59	16.29
Merged-chr6-119444326-3	chr6	119444252	119444452	+	908.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 3 of 4)	intron (NM_009525, intron 3 of 4)	5034.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	9.69	15.09	14.26	23.33	19.64	20.38	9.97	29.64	16.13	16.57	30.15	16.92
Merged-chr14-106155351-3	chr14	106155261	106155461	+	908.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49163.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	10.09	6.54	6.85	18.1	13.91	14.42	11.29	19.93	12.19	14.56	29.65	9.08
Merged-chr7-83878361-3	chr7	83878249	83878449	+	908.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5992.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	6.86	11.07	36.51	29.76	22.5	9.41	5.98	17.97	16.52	10.04	16.58	10.34
Merged-chr9-37245752-3	chr9	37245622	37245822	+	908.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	10016.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	12.52	15.59	6.85	6.44	11.05	8.15	9.63	15.95	14.16	20.08	13.57	10.96
Merged-chr2-4446787-3	chr2	4446693	4446893	+	908.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45817.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	11.71	7.29	11.98	18.9	13.09	17.56	16.28	25.6	25.18	21.09	32.16	12.53
Merged-chr7-49121473-2	chr7	49121347	49121547	+	908.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_154465)	TTS (NR_154465)	40711.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	8.88	7.04	8.56	6.84	8.59	8.78	9.97	13.91	16.72	9.54	20.1	16.29
Merged-chr9-101045937-3	chr9	101045831	101046031	+	908.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	-11047.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	25.04	10.06	7.42	16.49	6.95	21.32	13.29	13.79	15.54	8.54	20.6	15.04
Merged-chr7-92675854-2	chr7	92675732	92675932	+	908.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-5920.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	12.92	11.32	5.7	9.25	4.09	21.01	8.64	7.29	4.33	2.01	6.53	4.7
Merged-chr12-82261777-2	chr12	82261678	82261878	+	908.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-49571.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.86	4.28	9.13	13.67	11.05	10.03	9.97	20.13	15.54	13.56	18.09	14.1
Merged-chr2-142699490-3	chr2	142699393	142699593	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	201971.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.46	9.81	10.27	11.66	15.55	18.5	12.95	16.29	26.36	25.61	18.09	19.74
Merged-chr12-98677604-3	chr12	98677501	98677701	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011877, exon 19 of 19)	3' UTR (NM_011877, exon 19 of 19)	49459.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	10.5	12.32	16.54	16.09	14.73	12.86	10.96	22.96	29.11	11.05	37.18	10.65
Merged-chr2-131426636-3	chr2	131426528	131426728	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65234.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	9.29	9.56	20.54	6.84	24.14	30.73	7.64	20.52	28.13	26.11	27.13	12.84
Merged-chr12-72694092-1	chr12	72693992	72694192	+	908.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29264.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	7.27	4.02	3.99	4.83	13.09	14.74	12.95	6.84	5.31	4.52	8.54	2.82
Merged-chr12-16869640-1	chr12	16869540	16869740	+	908.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25338.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.04	3.52	6.28	4.42	6.14	12.86	9.97	11.72	5.9	4.02	1.51	7.52
Merged-chr1-33964857-1	chr1	33964757	33964957	+	908.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-46968.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.65	4.78	1.71	4.02	9.41	10.66	9.97	10.04	6.49	4.52	7.03	5.01
Merged-chr1-155558231-3	chr1	155558151	155558351	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028250, exon 1 of 8)	5' UTR (NM_028250, exon 1 of 8)	131.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	10.09	9.81	18.25	9.25	22.91	15.68	13.29	15.7	20.65	22.59	18.09	15.35
Merged-chr17-33943568-4	chr17	33943433	33943633	+	908.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020603, intron 7 of 14)	intron (NM_020603, intron 7 of 14)	2810.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	11.31	13.33	9.13	10.86	17.59	18.81	16.28	17.55	11.8	11.05	18.59	15.98
Merged-chr14-73057012-3	chr14	73056915	73057115	+	908.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-7901.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	13.73	11.57	28.52	42.63	23.32	16.62	14.62	28.23	19.67	11.05	14.57	20.68
Merged-chr1-172247711-3	chr1	172247595	172247795	+	908.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013734, intron 7 of 22)	MER21C|LTR|ERVL	10729.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	16.96	17.1	11.98	11.66	12.27	33.87	10.3	9.5	17.7	23.1	29.65	9.4
Merged-chr9-21989466-3	chr9	21989390	21989590	+	908.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-37.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	8.88	11.82	18.25	18.1	21.27	12.54	15.28	14.16	10.23	12.05	17.59	16.29
Merged-chr18-12132862-2	chr18	12132761	12132961	+	908.2666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4011.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	10.5	3.52	5.13	7.64	8.18	11.6	15.61	13.93	26.36	8.54	18.59	13.16
Merged-chr3-154288821-3	chr3	154288723	154288923	+	908.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41737.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	10.9	8.55	6.85	13.67	18.41	23.52	17.94	28.91	22.62	21.09	24.12	16.6
Merged-chr12-39230960-1	chr12	39230860	39231060	+	908.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	447249.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.06	3.52	1.14	2.82	11.45	6.59	12.29	16.23	5.51	2.51	9.04	11.59
Merged-chr5-150176796-1	chr5	150176696	150176896	+	908.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83134.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.4	2.01	2.28	0.8	2.45	1.25	12.62	2.44	18.29	9.54	22.61	12.53
Merged-chr17-55754593-3	chr17	55754495	55754695	+	908.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	4611.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	20.59	9.56	23.96	14.48	20.05	27.28	23.25	4.63	11.6	17.07	14.57	3.13
Merged-chr1-80655395-3	chr1	80655306	80655506	+	908.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	9946.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	11.71	13.83	11.41	22.52	13.91	16.62	7.31	19.15	16.13	14.56	21.1	10.65
Merged-chr8-33660757-3	chr8	33660651	33660851	+	908.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	7513.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	8.48	9.06	33.09	20.51	26.59	21.64	35.21	53.47	88.51	120.0	165.32	70.17
Merged-chr17-31081140-1	chr17	31081040	31081240	+	908.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	23446.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	9.69	5.53	6.85	14.48	15.14	7.84	11.29	16.54	6.69	4.52	9.04	13.78
Merged-chr15-25553221-3	chr15	25553114	25553314	+	908.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	39.57	17.1	11.98	15.69	24.96	28.85	28.23	15.45	23.6	16.57	19.6	9.71
Merged-chr2-4591831-2	chr2	4591723	4591923	+	908.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 5 of 11)	MTEb|LTR|ERVL-MaLR	32069.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	8.08	4.78	1.71	5.23	9.82	8.47	3.65	10.96	18.1	13.56	15.07	8.14
Merged-chr10-111774007-2	chr10	111773899	111774099	+	908.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	100377.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	16.96	18.61	22.82	10.46	15.96	25.4	26.57	15.0	10.62	16.57	10.05	3.76
Merged-chr5-134233367-3	chr5	134233281	134233481	+	908.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3756.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	30.69	7.55	34.8	10.86	26.59	25.09	23.25	30.67	25.57	18.08	28.64	17.23
Merged-chr11-115473805-3	chr11	115473690	115473890	+	908.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1877.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	24.63	23.64	9.7	20.51	16.77	25.71	12.29	20.22	13.96	18.58	20.1	8.77
Merged-chr2-49364083-3	chr2	49364022	49364222	+	908.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-87364.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	15.34	10.31	8.56	12.47	9.0	17.25	10.96	20.44	10.82	12.05	14.07	6.58
Merged-chr6-5167506-3	chr6	5167381	5167581	+	908.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011134)	TTS (NM_011134)	26465.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	13.33	13.33	7.42	14.48	21.27	15.68	11.63	16.57	24.39	13.56	15.58	13.47
Merged-chr5-20881600-3	chr5	20881523	20881723	+	908.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	501.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	20.59	17.86	6.85	8.85	17.59	18.5	12.29	12.31	23.41	23.6	20.6	17.54
Merged-chr7-42642600-3	chr7	42642511	42642711	+	908.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	-7.0	NM_001242388	208111.0	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	18.17	8.55	11.41	21.32	42.14	18.5	17.94	30.25	36.58	36.65	55.78	19.42
Merged-chr5-38307854-3	chr5	38307746	38307946	+	908.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11663.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	8.48	21.63	14.83	18.5	15.14	13.48	12.95	11.8	12.19	13.05	21.61	13.16
Merged-chr14-70370673-3	chr14	70370566	70370766	+	908.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19242.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	10.09	14.34	30.8	16.49	13.5	18.5	16.61	16.43	30.29	25.11	25.63	8.46
Merged-chr10-13104016-3	chr10	13103906	13104106	+	908.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009538, intron 1 of 5)	intron (NM_009538, intron 1 of 5)	13161.0	NR_131912	338438.0		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	15.75	7.04	19.97	22.93	26.18	18.5	7.97	28.37	15.34	8.03	17.59	18.17
Merged-chr11-107378353-3	chr11	107378262	107378462	+	908.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	92358.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	12.11	12.07	30.8	8.85	15.14	8.78	21.92	13.4	14.36	23.6	18.59	12.84
Merged-chr11-23953769-2	chr11	23953658	23953858	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-58488.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	7.67	4.78	16.54	6.44	11.05	10.03	9.97	7.51	15.34	8.03	9.04	11.28
Merged-chr17-57331580-1	chr17	57331480	57331680	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27106.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.85	1.76	0.0	4.02	2.45	8.15	2.33	4.51	7.67	2.51	9.04	4.07
Merged-chr16-31080761-1	chr16	31080661	31080861	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198626, intron 1 of 3)	CpG	671.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.85	6.54	14.26	6.84	8.59	5.96	7.97	8.72	5.51	6.53	7.54	5.01
Merged-chr18-80169199-2	chr18	80169106	80169306	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17033.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	15.75	14.34	11.98	8.45	17.59	14.42	11.63	10.32	12.98	15.06	9.04	12.53
Merged-chr16-5210565-1	chr16	5210465	5210665	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5309.0	NR_105783	102465188.0		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	8.08	6.79	7.99	8.85	8.18	1.88	4.32	12.48	4.52	6.03	8.04	3.45
Merged-chr16-34111419-3	chr16	34111315	34111515	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 34 of 59)	L1MB3|LINE|L1	-144377.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	15.75	21.13	30.8	13.27	10.23	22.89	10.63	7.6	20.85	21.59	14.07	1.57
Merged-chr13-58475669-2	chr13	58475558	58475758	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72315.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	12.92	17.1	2.28	8.04	11.45	21.95	7.64	6.03	11.01	25.61	9.04	7.83
Merged-chr7-97148583-1	chr7	97148483	97148683	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	L1MB3|LINE|L1	66832.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.04	2.26	3.42	7.24	13.5	12.23	11.29	8.61	4.92	4.52	9.04	1.25
Merged-chr10-21941395-1	chr10	21941295	21941495	+	908.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-37277.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.02	2.01	0.0	5.63	4.5	6.9	2.66	3.17	12.0	7.03	13.06	3.13
Merged-chr9-121313785-3	chr9	121313671	121313871	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	RMER17C|LTR|ERVK	16269.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	17.77	11.07	4.56	10.46	17.18	15.68	6.98	6.17	27.34	22.59	17.59	13.47
Merged-chr1-154036954-3	chr1	154036854	154037054	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137025.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	12.92	5.53	7.99	17.7	11.05	17.87	11.63	11.33	5.9	11.05	15.07	11.28
Merged-chr13-109823876-1	chr13	109823776	109823976	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-79933.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	1.26	2.28	1.61	11.86	6.9	10.3	8.3	2.16	0.5	1.0	2.51
Merged-chr4-102565767-1	chr4	102565667	102565867	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	MIRb|SINE|MIR	-4293.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.63	5.79	6.28	10.86	5.73	6.27	10.96	8.8	7.28	4.02	3.52	4.39
Merged-chr8-11067646-1	chr8	11067546	11067746	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59216.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	1.62	1.51	2.85	4.02	2.05	10.98	3.32	8.66	4.13	2.51	10.55	0.0
Merged-chr11-32346511-1	chr11	32346411	32346611	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1300.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	18.57	9.31	2.28	4.42	2.86	2.51	0.66	5.21	5.51	9.54	4.52	5.95
Merged-chr13-60682929-2	chr13	60682824	60683024	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80713.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.46	7.29	11.41	6.03	9.0	3.45	3.32	4.4	12.39	8.03	21.61	19.11
Merged-chr17-47658977-2	chr17	47658875	47659075	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198421, intron 2 of 6)	intron (NM_198421, intron 2 of 6)	28285.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	12.52	7.29	26.24	10.86	18.0	4.39	9.3	18.98	3.74	4.52	7.54	5.33
Merged-chr13-41437592-1	chr13	41437492	41437692	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	49768.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.65	6.79	5.13	4.02	5.32	11.6	8.97	8.92	3.93	17.07	12.06	5.01
Merged-chr4-150915398-1	chr4	150915298	150915498	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4757.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	4.44	3.27	4.56	4.42	9.82	5.64	4.65	8.97	3.74	7.03	4.02	5.01
Merged-chr9-88481263-2	chr9	88481164	88481364	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284328, intron 1 of 11)	intron (NM_001284328, intron 1 of 11)	1133.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	11.71	4.53	8.56	4.42	9.82	14.42	7.64	10.63	12.98	10.04	13.06	9.08
Merged-chrX-71396500-1	chrX	71396400	71396600	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313702, intron 12 of 17)	intron (NM_001313702, intron 12 of 17)	31740.0	NM_001313706	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	3.23	2.52	5.7	4.02	11.86	4.08	11.63	8.41	4.13	1.0	7.54	5.95
Merged-chr2-3719602-1	chr2	3719502	3719702	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	L1_Mus3|LINE|L1	6144.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	10.09	20.88	8.56	7.24	13.5	10.35	12.95	2.07	12.19	6.03	7.03	4.39
Merged-chr6-42350979-3	chr6	42350784	42350984	+	907.962952	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 2 of 9)	intron (NM_001289618, intron 2 of 9)	1056.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	3.23	6.04	4.56	8.04	9.41	6.9	7.64	8.1	12.0	12.55	15.07	10.34
Merged-chr7-143465127-3	chr7	143464986	143465186	+	907.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4036.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	12.52	16.35	8.56	5.63	13.91	6.59	11.63	11.5	13.57	4.52	16.08	15.35
Merged-chr2-60211909-3	chr2	60211805	60212005	+	907.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	1969.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	6.06	13.83	10.27	12.07	21.27	22.58	15.28	20.94	22.42	27.11	21.61	16.6
Merged-chr6-97175917-3	chr6	97175816	97176016	+	907.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081111, exon 2 of 17)	exon (NM_001081111, exon 2 of 17)	3208.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	15.34	12.83	10.27	16.89	20.05	12.23	16.94	27.53	20.85	9.04	20.1	10.96
Merged-chrX-71215549-3	chrX	71215426	71215626	+	907.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 1 of 15)	intron (NM_001358113, intron 1 of 15)	452.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	10.5	13.33	9.7	10.05	24.55	15.99	13.62	13.21	17.51	23.6	18.59	8.14
Merged-chr11-98948542-3	chr11	98948449	98948649	+	907.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8838.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	11.71	11.82	11.41	12.47	19.23	22.26	14.62	15.84	17.51	11.55	22.11	10.02
Merged-chr10-62311606-3	chr10	62311513	62311713	+	907.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 5 of 21)	intron (NM_010438, intron 5 of 21)	28808.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	12.52	12.58	15.97	18.9	14.32	7.21	15.28	22.35	12.78	8.54	29.65	12.84
Merged-chr17-27038435-2	chr17	27038347	27038547	+	907.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9188.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	7.27	5.03	6.85	3.22	10.64	4.39	7.31	7.01	58.61	65.27	52.26	38.22
Merged-chr10-22070380-1	chr10	22070280	22070480	+	907.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2301.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.0	1.01	0.0	0.0	1.23	0.94	1.33	1.96	17.11	9.54	32.16	10.65
Merged-chr8-26907720-3	chr8	26907541	26907741	+	907.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69695.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.86	12.58	6.85	11.66	16.36	13.8	4.98	19.32	8.85	8.54	8.54	12.22
Merged-chr9-104232161-3	chr9	104232050	104232250	+	907.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30780.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	10.5	13.58	10.84	11.66	31.09	40.14	17.27	30.53	30.49	24.1	35.68	27.25
Merged-chr17-73029794-1	chr17	73029694	73029894	+	907.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-78191.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	7.67	2.52	3.99	1.21	10.64	12.54	16.94	13.99	6.29	2.01	1.0	2.19
Merged-chr7-19472611-3	chr7	19472491	19472691	+	907.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14097.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	10.5	5.79	8.56	13.27	13.5	8.15	10.96	16.51	24.39	22.09	28.64	15.66
Merged-chr1-191557335-3	chr1	191557232	191557432	+	907.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305233, intron 9 of 15)	intron (NM_001305233, intron 9 of 15)	18212.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	10.09	16.35	10.27	10.86	28.64	30.73	27.57	18.25	55.86	26.61	30.15	14.1
Merged-chr5-43841509-4	chr5	43841395	43841595	+	907.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009763, intron 8 of 8)	intron (NM_009763, intron 8 of 8)	22602.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	14.54	5.28	2.85	3.22	13.09	6.9	18.6	9.9	8.85	10.04	16.58	14.72
Merged-chr12-106016837-1	chr12	106016737	106016937	+	907.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	6574.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	11.71	4.78	3.99	3.22	13.91	8.47	10.3	11.5	12.19	6.53	9.04	5.33
Merged-chr5-3421055-2	chr5	3420937	3421137	+	907.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	77144.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	9.29	8.8	6.28	6.44	13.91	11.29	2.66	6.59	20.26	23.1	32.66	11.9
Merged-chr5-104023727-3	chr5	104023608	104023808	+	907.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1912.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	5.65	10.56	27.38	17.7	13.09	12.54	4.32	10.04	21.64	19.08	14.57	8.46
Merged-chr1-191085167-3	chr1	191085026	191085226	+	907.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_198654)	TTS (NM_198654)	-13288.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	15.34	11.82	5.7	10.05	11.86	22.89	9.63	8.58	17.31	37.66	16.58	24.43
Merged-chr5-130044294-3	chr5	130044178	130044378	+	907.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007761, intron 4 of 5)	intron (NM_007761, intron 4 of 5)	14972.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	14.54	13.83	6.85	9.65	2.45	9.09	3.99	10.46	19.67	24.6	16.58	12.53
Merged-chr15-82218949-3	chr15	82218857	82219057	+	907.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5423.0	NM_028075	72049.0	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	14.13	15.85	15.97	10.05	4.91	11.6	10.96	8.86	10.23	12.55	15.07	11.59
Merged-chr11-68548614-3	chr11	68548523	68548723	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-7563.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	15.75	23.39	24.53	14.88	11.05	19.76	4.98	5.55	15.74	18.58	2.01	10.02
Merged-chr18-4258421-3	chr18	4258326	4258526	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92594.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	9.29	17.61	7.99	18.9	27.41	23.52	18.6	30.2	22.23	21.09	21.61	11.59
Merged-chr1-186705377-3	chr1	186705293	186705493	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001329107, exon 1 of 8)	5' UTR (NM_001329107, exon 1 of 8)	596.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	23.82	19.37	12.55	18.1	27.82	18.19	18.6	26.27	13.77	13.05	26.13	18.17
Merged-chr10-78096262-3	chr10	78096172	78096372	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26904.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	12.11	9.56	21.11	11.26	24.55	15.99	16.94	22.82	26.95	14.56	18.59	19.11
Merged-chr1-105977647-3	chr1	105977540	105977740	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4a2|LINE|L1	12642.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	7.67	2.26	17.68	16.09	5.73	14.74	16.61	29.24	10.23	9.54	21.1	14.72
Merged-chr11-22969687-3	chr11	22969598	22969798	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-2307.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	13.73	19.12	23.96	20.91	15.55	22.89	13.29	9.73	23.8	11.55	23.62	13.16
Merged-chr11-32455891-3	chr11	32455786	32455986	+	907.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361561, intron 1 of 1)	CpG	516.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	11.31	12.32	11.41	12.07	7.77	13.17	13.29	10.71	11.6	20.08	8.54	19.74
Merged-chr7-80457471-3	chr7	80457358	80457558	+	907.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 21 of 21)	MIR3|SINE|MIR	-52022.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	11.31	8.3	15.4	11.66	14.73	13.17	4.98	15.2	12.98	16.57	17.59	19.42
Merged-chr10-80623710-3	chr10	80623604	80623804	+	907.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	924.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	16.56	13.58	18.25	8.04	5.32	26.03	7.31	11.44	29.5	15.57	16.08	16.6
Merged-chr2-144714780-3	chr2	144714669	144714869	+	907.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	RMER13B|LTR|ERVK	-108897.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	14.13	11.32	19.4	20.51	14.32	23.83	6.64	15.73	12.98	12.05	10.55	6.58
Merged-chr2-137117559-3	chr2	137117460	137117660	+	907.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-8595	-1040.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	9.29	6.29	15.97	6.44	19.23	26.03	12.62	23.13	15.14	17.07	20.1	6.89
Merged-chr17-87055121-1	chr17	87055021	87055221	+	907.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29560.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	1.62	3.52	6.85	4.42	3.27	1.25	1.99	2.16	15.54	13.05	36.68	12.84
Merged-chr14-54735279-2	chr14	54735187	54735387	+	907.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 5 of 10)	intron (NM_016972, intron 5 of 10)	-23113.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	15.75	12.32	11.98	14.08	15.55	20.7	4.98	8.19	16.13	9.54	6.53	2.19
Merged-chr5-36730886-3	chr5	36730771	36730971	+	907.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17808.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	8.48	13.33	9.7	19.31	24.55	28.22	16.61	26.38	32.85	29.12	34.17	27.25
Merged-chr17-5605603-3	chr17	5605494	5605694	+	907.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	16.15	11.32	13.69	11.66	17.59	14.74	11.96	19.07	13.57	23.1	22.11	13.78
Merged-chr8-116243213-3	chr8	116243106	116243306	+	907.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261809.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	7.67	8.8	17.11	17.29	13.09	11.92	20.26	23.3	16.72	14.56	16.58	11.59
Merged-chr11-110993302-3	chr11	110993192	110993392	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-4195.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	22.61	15.59	17.11	23.33	11.45	10.66	12.29	11.61	14.36	29.62	24.12	17.23
Merged-chr10-95507020-2	chr10	95506927	95507127	+	907.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5078.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	1.62	2.77	6.85	4.42	6.14	10.66	4.32	10.99	12.19	4.02	3.01	12.84
Merged-chr12-105968250-2	chr12	105968103	105968303	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42060.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	4.44	4.78	3.42	2.82	0.0	2.82	4.98	1.12	8.46	7.03	8.04	2.51
Merged-chr16-38679086-2	chr16	38678973	38679173	+	907.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	RCHARR1|DNA|hAT-Charlie	33962.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	2.83	17.1	2.28	4.02	11.45	29.16	5.65	7.96	16.92	22.59	21.1	3.13
Merged-chr11-116109698-3	chr11	116109602	116109802	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172570, exon 1 of 6)	exon (NM_172570, exon 1 of 6)	533.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	12.11	13.58	8.56	11.26	14.73	13.17	6.98	13.46	14.75	9.04	17.08	15.35
Merged-chr1-161492258-2	chr1	161492151	161492351	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2406.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	12.52	6.54	16.54	14.08	7.77	6.27	21.92	21.39	8.65	2.01	3.01	7.21
Merged-chr9-96723860-3	chr9	96723762	96723962	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	-4012.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	11.71	8.8	28.52	20.91	15.96	14.74	18.27	16.99	17.51	15.06	25.63	11.28
Merged-chr16-69667943-2	chr16	69667843	69668043	+	907.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132438.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	4.04	6.04	2.85	9.65	10.64	12.54	21.59	30.95	14.75	8.54	17.59	10.34
Merged-chr17-65765151-3	chr17	65765052	65765252	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	7600.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.86	7.8	12.55	15.28	25.77	13.48	14.62	16.96	28.91	15.06	31.15	16.92
Merged-chr11-75054315-3	chr11	75054204	75054404	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11687.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	11.31	7.04	17.68	13.67	13.09	14.74	15.61	14.47	15.54	6.53	13.57	6.58
Merged-chr13-23433063-2	chr13	23432962	23433162	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-2045.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	32.71	22.89	13.12	10.86	19.64	23.83	15.94	16.29	28.13	19.08	21.61	11.28
Merged-chr11-114812895-3	chr11	114812811	114813011	+	907.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13987.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	6.86	10.31	6.28	6.03	9.41	14.11	9.97	8.66	8.85	11.05	14.57	5.64
Merged-chr2-31447692-3	chr2	31447570	31447770	+	907.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22600.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	26.65	39.49	34.8	28.96	11.45	24.46	5.98	9.98	27.34	22.59	14.07	14.41
Merged-chr10-78148145-3	chr10	78148058	78148258	+	907.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21610.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	34.73	17.61	13.69	8.45	26.59	42.02	16.94	8.3	29.11	31.13	24.12	10.96
Merged-chr9-31018367-2	chr9	31018246	31018446	+	907.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12298.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	8.08	10.31	5.7	3.22	7.36	14.42	10.63	7.77	12.78	13.05	20.6	12.53
Merged-chr3-90085536-3	chr3	90085462	90085662	+	907.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	RSINE1|SINE|B4	6041.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	20.59	7.04	14.83	7.24	22.09	19.44	7.31	14.94	17.7	20.08	10.05	7.52
Merged-chr5-29947076-3	chr5	29946906	29947106	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66108.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.85	4.28	8.56	6.84	14.32	8.47	11.96	14.22	11.8	13.05	9.04	6.27
Merged-chr10-80995359-3	chr10	80995247	80995447	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	6018.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	11.31	13.08	14.26	15.69	9.0	8.78	11.63	7.6	8.65	10.54	5.02	7.21
Merged-chr9-123942227-3	chr9	123942153	123942353	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26439.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	14.54	14.09	13.69	18.9	15.96	20.07	22.26	16.43	14.16	10.04	19.6	5.64
Merged-chr3-105050045-3	chr3	105049928	105050128	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2925.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.04	10.31	22.25	16.89	9.41	13.8	18.27	15.03	12.0	4.02	26.63	10.65
Merged-chr14-45075052-3	chr14	45074975	45075175	+	907.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86964.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	13.73	5.79	12.55	27.35	19.23	6.27	16.94	22.51	12.98	19.08	14.57	13.47
Merged-chr18-84274087-3	chr18	84273992	84274192	+	907.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	185934.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	6.46	10.31	8.56	15.28	16.36	14.74	27.57	26.38	12.39	18.08	15.58	15.04
Merged-chr11-115675771-3	chr11	115675673	115675873	+	907.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	23761.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	13.33	11.07	18.83	22.12	19.64	12.54	23.25	30.42	25.18	22.59	18.09	18.48
Merged-chr15-9072364-3	chr15	9072196	9072396	+	907.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	1036.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	8.88	7.29	3.99	4.02	8.18	7.84	11.63	8.86	9.64	8.54	11.05	12.53
Merged-chr11-83705433-3	chr11	83705339	83705539	+	907.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	1383.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	20.59	19.37	11.41	2.01	34.77	25.71	4.98	5.75	24.39	36.15	12.56	3.13
Merged-chr5-3505760-3	chr5	3505641	3505841	+	907.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38092.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	11.71	9.06	12.55	7.64	15.14	17.87	10.96	13.74	15.54	18.58	22.61	10.65
Merged-chr3-84598160-3	chr3	84598043	84598243	+	907.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4569.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	9.69	8.55	18.83	11.66	16.77	22.26	9.3	13.91	14.75	18.58	19.6	15.66
Merged-chr17-33746298-2	chr17	33746187	33746387	+	907.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008997, exon 5 of 5)	3' UTR (NM_008997, exon 5 of 5)	14199.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	21.8	2.01	3.99	8.04	6.95	12.86	16.61	14.92	16.52	13.56	12.06	7.83
Merged-chr2-90903647-1	chr2	90903547	90903747	+	907.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026688, intron 2 of 6)	intron (NM_026688, intron 2 of 6)	1074.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	4.85	8.8	9.13	8.45	12.27	4.39	7.97	12.2	8.65	10.04	4.02	4.39
Merged-chr5-88553336-3	chr5	88553289	88553489	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1073.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	11.71	7.04	7.99	16.49	13.09	6.59	16.61	14.5	15.34	15.57	18.59	12.53
Merged-chr11-93984794-3	chr11	93984697	93984897	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-11294.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	18.17	13.08	19.97	31.37	4.91	8.15	1.99	6.81	36.98	25.61	41.71	26.31
Merged-chr15-83295105-3	chr15	83295009	83295209	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43335.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	14.54	10.31	17.11	19.31	12.68	16.62	14.28	15.64	12.59	6.53	13.57	15.35
Merged-chr3-38424098-1	chr3	38423998	38424198	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	60718.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	8.08	13.58	10.84	13.67	5.73	2.82	2.33	2.3	4.33	4.02	1.51	3.13
Merged-chr11-89006569-3	chr11	89006465	89006665	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 2 of 8)	MLT1J|LTR|ERVL-MaLR	7162.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.08	7.04	1.14	8.85	16.36	25.09	20.93	32.83	15.34	19.08	3.01	4.07
Merged-chr4-3779898-3	chr4	3779781	3779981	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	55774.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	6.46	6.04	10.27	11.26	18.0	19.76	20.26	18.56	12.78	19.58	32.16	21.3
Merged-chr11-106648508-3	chr11	106648331	106648531	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35501.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.46	5.03	6.85	5.63	9.82	8.78	2.33	11.07	15.34	9.54	5.53	6.89
Merged-chr8-119827160-3	chr8	119827061	119827261	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13418.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	10.09	10.31	11.98	4.83	11.86	19.44	8.64	16.23	17.11	18.08	18.09	19.74
Merged-chr6-101556489-3	chr6	101556396	101556596	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-178599.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	6.06	6.79	15.4	22.12	26.18	22.89	30.23	36.45	21.64	20.08	36.18	11.28
Merged-chr7-138885742-1	chr7	138885642	138885842	+	907.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23764.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	5.65	2.52	3.99	6.84	6.95	9.41	10.63	19.4	5.7	0.5	8.04	8.77
Merged-chr10-89697723-2	chr10	89697622	89697822	+	907.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	11359.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	12.52	14.84	19.4	15.28	20.86	10.03	18.93	27.62	3.54	1.51	4.52	1.25
Merged-chr2-140863686-3	chr2	140863587	140863787	+	907.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-192211.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	10.09	12.07	29.09	10.05	6.95	14.74	18.27	7.85	16.52	18.08	10.05	12.53
Merged-chr1-37903356-3	chr1	37903258	37903458	+	907.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12881.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	10.09	14.34	15.4	8.85	13.91	21.64	9.97	10.21	22.42	23.6	21.1	13.47
Merged-chr13-21160858-3	chr13	21160770	21160970	+	907.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17815.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	12.52	10.82	6.85	14.08	11.45	12.23	8.64	8.89	18.29	7.53	10.55	10.02
Merged-chr17-12307928-3	chr17	12307823	12308023	+	907.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	10737.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	10.9	8.55	8.56	12.07	34.77	26.97	27.24	35.16	32.85	30.63	42.71	23.18
Merged-chr13-69382965-2	chr13	69382849	69383049	+	907.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150915.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.81	0.0	0.0	0.0	3.27	8.78	2.66	10.35	19.28	21.09	26.13	12.22
Merged-chr1-86470698-3	chr1	86470580	86470780	+	907.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44351.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	14.54	2.77	10.27	18.9	17.18	19.13	21.26	20.92	27.34	28.12	30.15	20.05
Merged-chr13-107657857-2	chr13	107657769	107657969	+	907.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29528.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	12.11	12.58	19.97	37.4	12.68	11.92	10.96	10.82	3.34	6.53	7.54	5.01
Merged-chr1-91259983-2	chr1	91259891	91260091	+	907.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 3 of 10)	URR1A|DNA|hAT-Charlie	9425.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	12.92	7.04	11.41	7.64	2.45	7.53	4.65	10.51	3.34	6.03	9.04	5.33
Merged-chr1-92648155-6	chr1	92648034	92648234	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	707.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.04	10.56	6.28	12.47	9.41	8.15	15.61	7.12	8.65	8.54	4.52	9.71
Merged-chr6-140751225-3	chr6	140751134	140751334	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	124349.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.04	3.27	13.12	11.66	13.5	10.35	16.94	22.74	16.92	20.08	17.08	6.58
Merged-chr16-4743390-3	chr16	4743265	4743465	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010443, intron 1 of 5)	RLTR28|LTR|ERVL	1752.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	10.5	9.31	9.13	8.85	33.14	20.7	15.28	28.4	30.29	19.58	23.11	19.42
Merged-chr10-59865248-3	chr10	59865170	59865370	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14321.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	8.88	8.55	14.83	10.46	14.32	22.58	9.63	22.04	22.23	18.08	39.19	13.16
Merged-chr17-24159071-3	chr17	24158989	24159189	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	4644.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	14.54	13.08	10.27	19.31	16.36	12.54	8.64	15.5	22.23	11.55	25.12	15.66
Merged-chr2-30934163-3	chr2	30934055	30934255	+	907.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-18846.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	7.27	13.08	15.97	3.62	9.82	15.37	4.65	5.1	14.55	24.1	14.07	11.28
Merged-chr12-35406259-3	chr12	35406174	35406374	+	907.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	10.9	11.32	12.55	18.5	8.18	15.99	16.28	32.33	9.64	13.05	30.65	13.47
Merged-chr1-194962396-3	chr1	194962303	194962503	+	907.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033564, intron 2 of 4)	intron (NR_033564, intron 2 of 4)	14556.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	14.94	11.82	11.98	10.86	16.77	17.87	11.29	13.23	18.1	7.03	9.04	9.71
Merged-chr12-112875765-3	chr12	112875671	112875871	+	907.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14855.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	12.92	16.6	11.98	18.1	9.0	18.81	5.98	16.51	22.23	18.58	24.12	12.53
Merged-chr14-14348407-3	chr14	14348311	14348511	+	907.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 3 of 11)	intron (NM_008369, intron 3 of 11)	1916.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	10.9	12.83	17.68	10.05	10.64	22.26	4.32	6.62	18.1	27.11	17.59	11.28
Merged-chr19-21068593-3	chr19	21068525	21068725	+	907.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36085.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.86	11.07	11.98	10.05	14.73	18.5	35.87	19.32	16.33	31.13	32.16	14.72
Merged-chr2-52424390-3	chr2	52424313	52424513	+	907.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	CpG	461.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	8.88	7.29	2.85	11.26	11.86	7.21	11.63	10.12	15.34	8.03	11.56	11.59
Merged-chr9-103345757-2	chr9	103345660	103345860	+	907.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176979, exon 25 of 28)	exon (NM_176979, exon 25 of 28)	19219.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	7.67	1.76	9.7	7.64	3.27	5.96	7.97	10.07	15.74	14.06	15.58	9.4
Merged-chr4-45473322-3	chr4	45473236	45473436	+	907.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	57492.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	20.59	9.06	26.24	22.93	16.77	17.25	40.86	56.64	14.36	10.04	14.07	10.96
Merged-chr17-71868046-2	chr17	71867942	71868142	+	907.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007439)	TTS (NM_007439)	86095.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	11.31	9.31	21.11	12.87	20.86	19.13	6.98	17.83	0.98	0.0	0.5	0.31
Merged-chr11-89035716-3	chr11	89035620	89035820	+	907.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25028.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	4.44	5.03	25.67	12.47	10.64	5.33	7.31	11.78	44.84	48.7	61.3	46.36
Merged-chr10-83534162-3	chr10	83534052	83534252	+	907.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153543)	promoter-TSS (NM_153543)	-12.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	17.77	7.29	11.41	6.44	13.5	13.48	11.63	13.57	15.74	8.03	23.11	10.96
Merged-chr13-55474671-3	chr13	55474590	55474790	+	907.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177372, intron 12 of 13)	intron (NM_001177372, intron 12 of 13)	3086.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	27.86	20.88	9.7	6.44	9.41	19.13	5.98	7.4	33.44	33.64	28.64	13.78
Merged-chr6-145187605-3	chr6	145187478	145187678	+	907.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177222, intron 9 of 15)	MTEa|LTR|ERVL-MaLR	23392.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	14.94	12.58	8.56	13.67	7.77	19.44	8.3	15.06	16.33	8.03	8.54	8.46
Merged-chr7-128221154-3	chr7	128221066	128221266	+	907.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14800.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	19.79	11.82	27.95	34.19	26.18	30.1	29.23	46.91	16.13	16.57	47.74	24.12
Merged-chr5-24426841-3	chr5	24426764	24426964	+	907.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-657.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	14.54	5.28	7.99	7.24	13.09	10.98	11.63	18.42	9.44	22.59	16.08	14.72
Merged-chr5-23711866-1	chr5	23711766	23711966	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015554, intron 1 of 4)	B2_Mm2|SINE|B2	801.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	2.02	3.27	0.0	1.61	13.5	15.05	4.32	5.21	2.56	6.03	3.52	2.82
Merged-chr9-24770545-1	chr9	24770445	24770645	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194263, intron 2 of 7)	intron (NM_194263, intron 2 of 7)	3758.0	NM_020496	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	3.23	6.04	1.14	5.63	6.55	1.88	5.98	9.73	3.15	4.02	10.55	4.7
Merged-chr13-45269099-1	chr13	45268999	45269199	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120643.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.83	1.51	0.0	5.23	3.27	1.25	6.31	8.13	6.49	5.02	5.02	6.27
Merged-chr7-113514971-3	chr7	113514876	113515076	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	1142.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	12.92	15.09	9.7	7.64	20.05	13.8	12.62	22.49	22.23	17.07	20.6	16.92
Merged-chr1-181237533-1	chr1	181237433	181237633	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25555.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.06	3.77	3.99	1.61	8.59	5.02	1.33	11.13	1.38	2.01	3.52	5.95
Merged-chr9-104661628-1	chr9	104661528	104661728	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	92145.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.0	2.01	3.42	4.02	6.55	2.51	4.65	8.86	2.95	4.52	5.53	1.57
Merged-chr6-83455977-2	chr6	83455882	83456082	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 1 of 11)	CpG	410.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	9.69	10.82	7.42	8.45	16.36	22.89	14.62	8.52	23.01	28.12	22.11	7.83
Merged-chr6-6281036-1	chr6	6280936	6281136	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_136906)	TTS (NR_136906)	32377.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	3.23	1.76	5.7	5.23	9.0	9.72	18.6	27.17	4.33	9.54	20.1	5.64
Merged-chr1-24702521-1	chr1	24702421	24702621	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	23603.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.65	0.5	7.42	12.07	5.32	9.41	9.3	20.1	13.18	5.02	12.06	4.39
Merged-chr4-95191883-1	chr4	95191783	95191983	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-139661.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.85	2.01	6.28	1.61	3.27	6.27	7.97	10.63	3.93	1.0	2.51	0.0
Merged-chr12-4494343-1	chr12	4494243	4494443	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17161.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	1.51	4.56	7.24	3.68	10.98	7.31	17.36	3.15	5.52	3.52	4.39
Merged-chr6-125354879-3	chr6	125354871	125355071	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	5248.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	10.5	5.53	3.99	3.62	2.05	14.11	8.64	10.43	10.42	13.56	13.06	17.54
Merged-chr6-72347775-2	chr6	72347679	72347879	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026696, intron 2 of 3)	intron (NM_026696, intron 2 of 3)	462.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	17.77	18.61	10.27	16.09	17.18	20.07	5.65	18.95	22.42	17.57	15.58	9.08
Merged-chr11-55452273-1	chr11	55452173	55452373	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	8935.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	3.27	7.99	3.22	11.05	13.48	1.99	4.51	6.29	2.01	5.02	2.51
Merged-chr2-91475922-1	chr2	91475822	91476022	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172668, intron 8 of 37)	intron (NM_172668, intron 8 of 37)	18391.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	7.27	3.02	3.42	0.8	5.73	7.53	3.99	7.79	3.34	1.51	3.52	3.13
Merged-chr9-77737907-1	chr9	77737807	77738007	+	907.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-16628.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.44	6.29	3.99	9.65	6.14	8.78	7.97	9.06	15.54	24.1	25.12	7.83
Merged-chr16-22105548-1	chr16	22105448	22105648	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	Charlie1a|DNA|hAT-Charlie	57751.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	4.04	3.27	6.85	3.62	2.45	8.15	0.66	8.78	0.79	2.01	5.02	1.25
Merged-chr14-51090645-3	chr14	51090538	51090738	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-439.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	7.67	12.58	7.99	15.69	9.82	10.35	3.32	8.61	16.33	6.03	16.58	8.14
Merged-chr10-25295168-1	chr10	25295068	25295268	+	907.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	3995.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.62	2.01	1.14	1.21	0.0	0.0	0.33	0.0	13.77	25.11	28.14	8.77
Merged-chr2-132235384-1	chr2	132235284	132235484	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12404.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	12.52	4.78	5.13	4.83	2.05	8.78	4.32	7.6	6.1	4.02	4.52	4.7
Merged-chr2-4391338-2	chr2	4391239	4391439	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172475, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-9637.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	10.09	3.52	4.56	2.41	4.91	3.76	8.64	15.73	16.72	14.56	17.59	8.14
Merged-chr2-150895097-2	chr2	150894995	150895195	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	9636.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	16.56	10.56	5.7	5.63	8.18	5.64	3.65	14.78	7.08	5.02	4.02	1.88
Merged-chr5-115268467-1	chr5	115268367	115268567	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	4428.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.46	3.02	2.28	6.44	2.45	4.39	7.97	13.4	2.95	7.03	7.03	3.76
Merged-chr4-134932990-1	chr4	134932890	134933090	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026780, intron 2 of 6)	URR1A|DNA|hAT-Charlie	2010.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	7.27	6.79	0.0	2.41	0.0	2.2	1.66	0.87	0.39	0.5	6.03	1.57
Merged-chr10-4093006-3	chr10	4092908	4093108	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	119933.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	25.44	19.87	27.38	30.97	31.09	19.76	42.19	69.0	11.41	11.55	12.56	4.39
Merged-chr12-38765539-1	chr12	38765439	38765639	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14543.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	1.62	3.52	1.14	1.61	0.0	1.88	1.66	1.07	0.59	0.5	0.0	1.57
Merged-chr9-114787945-3	chr9	114787839	114788039	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5946.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	10.9	7.04	7.99	11.26	11.86	11.6	12.29	21.08	31.47	38.66	49.24	48.24
Merged-chr10-99332808-3	chr10	99332711	99332911	+	906.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69580.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	15.34	9.06	9.13	18.1	19.23	16.62	28.9	18.84	23.6	17.07	16.08	7.21
Merged-chr6-145747303-3	chr6	145747172	145747372	+	906.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-61111.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	15.34	10.06	14.83	19.31	16.77	5.96	11.63	13.91	10.03	11.05	17.08	15.66
Merged-chr5-33273994-3	chr5	33273938	33274138	+	906.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	966.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	7.27	12.83	21.11	8.85	27.41	9.09	7.64	19.12	11.21	16.07	18.59	9.08
Merged-chr10-108099053-3	chr10	108098955	108099155	+	906.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63345.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	12.92	10.82	15.97	18.5	9.0	19.76	10.3	21.39	10.42	19.08	22.11	14.1
Merged-chr9-44169312-3	chr9	44169207	44169407	+	906.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	34649.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	23.42	7.04	12.55	13.27	11.45	15.99	9.3	22.54	23.01	15.06	6.53	11.59
Merged-chr4-63560215-3	chr4	63560151	63560351	+	906.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	24.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.86	10.06	18.25	10.46	15.96	16.93	24.91	25.79	15.54	12.05	19.09	10.65
Merged-chr11-74522791-3	chr11	74522711	74522911	+	906.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	CpG	67347.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	23.42	13.33	14.83	7.24	16.77	13.17	9.63	14.05	26.36	11.55	12.56	13.47
Merged-chr17-6107410-4	chr17	6107285	6107485	+	906.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001103181, intron 1 of 13)	intron (NM_001103181, intron 1 of 13)	555.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	14.54	9.81	9.13	7.64	13.5	16.93	14.28	9.56	17.31	25.61	13.57	6.58
Merged-chr8-83724944-3	chr8	83724830	83725030	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-946.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	13.73	16.6	13.69	16.89	16.77	22.89	10.96	20.44	21.64	8.03	25.63	11.9
Merged-chr12-98833198-3	chr12	98833128	98833328	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	62206.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	4.85	14.34	11.41	7.24	12.27	17.87	7.64	11.97	27.14	16.07	38.69	17.23
Merged-chr14-27378568-3	chr14	27378449	27378649	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17160.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	14.13	9.81	10.27	6.84	21.27	33.55	21.26	16.65	13.77	15.57	5.53	3.76
Merged-chr3-87906820-3	chr3	87906722	87906922	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-28.0	NM_001331051	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	11.31	20.63	4.56	16.09	11.45	19.76	18.6	14.52	15.14	28.12	17.08	19.74
Merged-chr4-43556123-3	chr4	43556031	43556231	+	906.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 3 of 56)	intron (NM_011602, intron 3 of 56)	6452.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	9.69	13.83	18.25	23.33	41.32	27.28	37.54	38.44	28.52	12.55	28.64	13.16
Merged-chr7-67425368-3	chr7	67425269	67425469	+	906.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52511.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	9.29	19.62	11.41	12.07	21.27	22.89	15.94	22.93	18.69	19.58	18.59	19.11
Merged-chrX-75108262-2	chrX	75108136	75108336	+	906.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001030307, exon 14 of 15)	exon (NM_001030307, exon 14 of 15)	12382.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	17.77	5.79	5.7	5.23	10.64	6.59	1.99	9.67	22.23	2.01	5.53	9.71
Merged-chr3-87337277-2	chr3	87337187	87337387	+	906.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20594.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.85	6.04	3.42	7.24	5.32	9.09	8.3	12.59	30.09	23.6	34.17	20.36
Merged-chr2-92024534-3	chr2	92024429	92024629	+	906.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	-359.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	15.34	16.6	13.12	14.88	15.55	22.89	11.96	23.27	17.51	10.54	21.1	10.65
Merged-chr14-21812949-3	chr14	21812861	21813061	+	906.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18600.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	14.94	18.61	12.55	5.23	14.73	15.68	6.98	6.03	22.62	17.07	21.61	12.22
Merged-chr5-105798485-3	chr5	105798386	105798586	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	L2c|LINE|L2	-78082.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	5.25	14.59	10.27	11.26	22.91	52.05	17.94	14.38	19.47	25.11	30.65	4.07
Merged-chr6-83454024-3	chr6	83453910	83454110	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	2382.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	12.11	13.08	8.56	9.65	19.23	8.15	21.59	20.52	19.47	20.08	13.57	6.89
Merged-chr17-56763560-3	chr17	56763449	56763649	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1202.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	11.31	14.34	9.7	12.87	14.73	20.7	16.61	14.36	22.42	27.11	29.14	10.65
Merged-chr3-115682979-3	chr3	115682881	115683081	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32074.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	8.08	9.81	14.83	13.67	33.14	21.32	33.22	34.77	20.26	35.65	39.19	15.35
Merged-chr5-30871951-3	chr5	30871834	30872034	+	906.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144525, intron 4 of 16)	intron (NM_144525, intron 4 of 16)	2355.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	13.73	12.58	6.85	20.91	15.14	16.62	7.97	13.96	27.93	14.56	17.08	15.66
Merged-chr2-167060876-3	chr2	167060779	167060979	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2055.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	13.73	21.88	9.7	8.04	9.82	25.4	10.63	20.38	20.26	31.63	24.62	21.62
Merged-chr1-180945591-1	chr1	180945491	180945691	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3073.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.65	5.53	0.0	8.04	12.27	18.5	8.3	8.44	5.51	6.53	6.03	11.9
Merged-chr6-97816002-1	chr6	97815902	97816102	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	8944.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	8.48	4.53	1.71	12.07	7.36	13.17	3.65	10.21	8.26	10.04	5.53	5.33
Merged-chr2-59438140-3	chr2	59438032	59438232	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46521.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	10.09	8.3	19.4	8.45	15.96	12.54	9.3	18.03	24.19	17.07	19.09	18.48
Merged-chr14-20861402-3	chr14	20861298	20861498	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	24736.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	18.98	13.08	31.38	29.36	13.91	9.09	7.31	21.08	15.93	16.57	19.09	13.16
Merged-chr3-27280605-3	chr3	27280517	27280717	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36460.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	11.71	5.79	6.85	8.04	22.5	15.05	19.93	20.27	30.29	17.57	19.09	15.35
Merged-chr6-113643021-3	chr6	113642890	113643090	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	4523.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	16.15	24.4	9.7	4.02	19.64	50.17	9.97	4.74	31.47	40.17	14.07	3.45
Merged-chr2-68350868-3	chr2	68350762	68350962	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	121119.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	11.71	21.13	6.85	15.69	22.5	15.37	22.26	25.85	22.62	9.54	29.14	8.14
Merged-chr7-67260035-1	chr7	67259935	67260135	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 7 of 11)	intron (NM_001357324, intron 7 of 11)	37419.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	4.85	2.01	10.84	5.63	6.95	10.66	6.31	11.52	7.87	9.04	3.52	8.46
Merged-chr1-155817766-1	chr1	155817666	155817866	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4867.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	6.86	6.29	13.69	4.02	6.55	11.92	5.31	9.98	0.39	1.51	0.0	0.0
Merged-chr7-19307130-4	chr7	19307031	19307231	+	906.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008036, exon 2 of 4)	exon (NM_008036, exon 2 of 4)	2914.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	21.8	7.8	10.84	10.46	10.23	11.29	6.31	6.45	14.55	15.57	14.07	6.58
Merged-chr5-64212527-4	chr5	64212440	64212640	+	906.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17817.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	15.75	6.79	10.84	14.88	12.68	8.78	29.56	31.21	12.78	9.04	16.08	12.53
Merged-chr1-126817844-2	chr1	126817755	126817955	+	906.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	12777.0	NM_176957	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	6.46	5.03	2.28	1.61	11.86	17.25	6.31	10.49	30.09	35.65	32.66	14.72
Merged-chr14-66871676-3	chr14	66871523	66871723	+	906.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001034881)	TTS (NM_001034881)	2773.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	10.9	9.06	8.56	12.47	8.18	5.64	5.31	11.47	12.0	8.54	13.06	9.4
Merged-chr16-35901965-3	chr16	35901860	35902060	+	906.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-30578.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	14.54	11.82	25.1	17.7	18.41	11.6	12.95	29.72	33.44	12.55	19.09	15.66
Merged-chr13-85506896-3	chr13	85506810	85507010	+	906.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-217424.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	11.71	6.79	16.54	14.88	25.77	11.92	15.28	25.85	20.06	15.57	17.59	11.9
Merged-chr4-115848221-3	chr4	115848103	115848303	+	906.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	9005.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	21.8	11.57	10.27	14.08	7.77	6.27	6.64	7.82	19.87	7.53	12.56	15.98
Merged-chr4-135282928-3	chr4	135282828	135283028	+	906.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10168.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	24.23	17.1	20.54	6.84	9.41	17.25	7.31	5.78	16.72	7.53	3.01	9.4
Merged-chr12-111699478-2	chr12	111699385	111699585	+	906.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13468.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	4.85	3.52	5.7	2.41	17.18	27.28	25.24	26.27	14.16	12.55	38.69	9.08
Merged-chr6-124782693-3	chr6	124782593	124782793	+	906.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21A|LTR|ERV1	-2966.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	10.9	13.58	5.13	8.04	8.18	19.13	13.29	8.24	17.7	11.55	14.57	6.58
Merged-chr15-96655689-3	chr15	96655577	96655777	+	906.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12764.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	8.88	13.33	16.54	11.26	14.73	23.83	6.31	21.31	23.01	6.03	27.64	18.8
Merged-chr11-95834949-2	chr11	95834832	95835032	+	906.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7363.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	16.15	23.9	19.97	8.85	6.95	18.5	8.64	4.35	19.67	20.08	9.55	11.9
Merged-chr9-3258860-3	chr9	3258761	3258961	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-59048.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	48.05	55.34	35.37	37.4	19.23	30.1	18.27	14.36	17.11	21.09	36.68	43.23
Merged-chr12-25223758-3	chr12	25223649	25223849	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94575.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	17.36	10.06	14.83	8.04	17.59	16.31	7.97	23.52	19.28	9.54	17.08	5.64
Merged-chr8-33968485-3	chr8	33968400	33968600	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-38637.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	14.13	10.56	15.97	21.72	21.68	25.09	19.6	30.22	9.64	12.55	17.08	10.65
Merged-chr4-141832430-3	chr4	141832339	141832539	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6434.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	17.36	19.12	33.09	19.71	6.55	9.72	4.32	8.64	45.04	36.15	32.66	20.36
Merged-chr6-146759197-2	chr6	146759098	146759298	+	906.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172734, intron 2 of 13)	intron (NM_172734, intron 2 of 13)	34268.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	6.86	1.76	6.28	0.8	1.23	4.08	13.29	7.4	23.6	10.54	36.68	11.9
Merged-chr1-165461956-3	chr1	165461863	165462063	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027430, intron 1 of 4)	intron (NM_027430, intron 1 of 4)	755.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	12.11	7.29	5.13	18.1	14.73	5.64	11.63	18.64	18.88	16.57	11.05	8.46
Merged-chr2-59203144-3	chr2	59203062	59203262	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42312.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	14.13	10.31	11.41	11.26	23.73	25.4	19.6	37.46	14.95	19.08	25.12	16.6
Merged-chr19-47531366-2	chr19	47531268	47531468	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 2 of 9)	intron (NM_175360, intron 2 of 9)	5751.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	9.69	7.55	17.11	14.88	11.05	20.07	17.94	16.99	6.49	6.53	13.57	4.39
Merged-chr5-9101590-1	chr5	9101490	9101690	+	906.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	853.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	14.13	10.31	5.7	5.23	9.41	16.93	5.98	3.08	17.11	27.62	12.56	3.45
Merged-chr14-19750579-1	chr14	19750479	19750679	+	906.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-678.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.65	7.55	0.0	5.23	13.09	10.98	9.3	7.77	4.52	3.51	2.01	3.45
Merged-chr12-100204043-2	chr12	100203947	100204147	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	3903.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	12.52	8.05	11.98	12.47	13.5	8.78	11.96	20.1	6.29	6.03	8.04	5.64
Merged-chr10-62507045-2	chr10	62506955	62507155	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B1_Mus1|SINE|Alu	702.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	15.75	4.53	15.97	6.03	6.95	11.29	11.63	3.22	14.36	15.06	12.56	9.71
Merged-chr15-100411307-2	chr15	100411209	100411409	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356952, intron 2 of 15)	intron (NM_001356952, intron 2 of 15)	11746.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	17.36	21.13	14.26	10.05	0.0	1.88	0.0	0.53	24.39	25.61	24.12	14.1
Merged-chr6-86396723-2	chr6	86396593	86396793	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	457.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	7.67	14.34	16.54	8.04	12.27	24.77	16.94	15.98	18.1	13.05	25.12	11.59
Merged-chr11-117317149-3	chr11	117317045	117317245	+	906.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-14570.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	19.38	18.36	19.4	19.71	12.27	17.56	6.64	13.85	19.67	9.54	7.03	12.53
Merged-chr14-65262447-3	chr14	65262347	65262547	+	906.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021458)	promoter-TSS (NM_021458)	16.0	NM_021458	14365.0	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	17.36	8.05	3.99	8.45	11.05	17.25	12.29	13.68	19.87	12.05	16.08	15.66
Merged-chr15-25556431-3	chr15	25556317	25556517	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	8.08	11.32	13.12	7.64	14.32	10.98	11.29	12.36	19.87	16.07	22.61	10.96
Merged-chr18-63709266-3	chr18	63709141	63709341	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	546.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	14.13	18.36	8.56	13.67	9.82	10.35	13.62	11.3	15.54	11.55	15.07	5.95
Merged-chr3-84647802-3	chr3	84647682	84647882	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18410.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	6.06	9.56	5.7	6.84	6.55	17.56	10.3	12.76	12.98	8.03	27.64	10.34
Merged-chr3-148978266-3	chr3	148978177	148978377	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23642.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	14.13	11.82	18.83	5.63	19.23	20.38	17.61	15.93	18.49	12.55	13.57	1.57
Merged-chr13-85284018-3	chr13	85283921	85284121	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145452, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	5465.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	17.77	9.31	10.27	25.34	23.73	16.31	9.63	27.59	29.31	21.59	15.58	11.9
Merged-chr5-147871672-3	chr5	147871562	147871762	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	11034.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	11.31	17.36	26.24	35.39	10.64	8.47	17.94	29.36	24.39	13.56	21.61	17.86
Merged-chr7-127118859-3	chr7	127118739	127118939	+	906.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	RSINE1|SINE|B4	3190.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	10.5	13.08	9.13	10.46	7.77	7.21	7.64	12.28	15.74	15.57	20.6	16.92
Merged-chr8-116587788-3	chr8	116587698	116587898	+	906.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 4 of 6)	intron (NM_029441, intron 4 of 6)	82783.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.06	5.53	22.82	10.86	14.32	13.17	7.31	15.06	23.41	15.57	43.21	35.71
Merged-chr2-90575259-3	chr2	90575145	90575345	+	906.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	MIRc|SINE|MIR	5402.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.23	9.56	10.27	6.44	15.55	11.29	5.31	10.21	10.42	14.06	11.05	15.04
Merged-chr3-152763574-2	chr3	152763492	152763692	+	906.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025662, intron 9 of 10)	Lx8|LINE|L1	49492.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	2.83	3.27	4.56	4.02	6.95	5.02	8.64	8.33	3.74	5.52	6.53	9.4
Merged-chr4-108318842-3	chr4	108318745	108318945	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9307.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	7.67	9.81	12.55	15.28	20.05	12.23	17.27	20.41	23.41	21.59	20.6	14.72
Merged-chr13-30749916-3	chr13	30749820	30750020	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347508, intron 1 of 8)	intron (NM_001347508, intron 1 of 8)	687.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	16.15	9.31	9.13	5.63	16.36	22.58	6.64	10.4	16.52	16.07	15.07	9.08
Merged-chr10-53509301-3	chr10	53509204	53509404	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	9685.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	18.17	8.55	12.55	8.85	18.41	21.95	10.96	12.73	16.33	20.59	18.59	9.08
Merged-chr16-57559572-1	chr16	57559472	57559672	+	906.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	MIRb|SINE|MIR	10330.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.23	4.02	2.85	3.22	9.82	11.6	7.64	7.18	1.77	3.01	8.04	4.39
Merged-chr12-79168112-1	chr12	79168012	79168212	+	906.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	4346.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.0	0.5	0.0	0.0	10.23	10.98	2.99	21.14	1.18	1.0	0.5	2.51
Merged-chr2-155443491-3	chr2	155443410	155443610	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2727.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	6.06	6.04	17.68	16.49	8.59	1.25	3.99	7.4	24.39	11.05	22.11	17.23
Merged-chr18-56709866-3	chr18	56709701	56709901	+	906.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	B3|SINE|B2	1988.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	14.54	19.87	2.85	6.03	14.32	10.35	6.31	12.93	10.23	7.53	15.58	5.64
Merged-chr19-55655001-3	chr19	55654895	55655095	+	906.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	47209.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	16.56	24.15	13.12	8.85	30.27	29.79	16.94	22.15	21.05	21.09	13.06	14.72
Merged-chr5-110980144-2	chr5	110980032	110980232	+	906.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-24012.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	23.82	21.63	11.98	12.87	18.82	15.37	3.65	10.77	10.42	10.54	20.1	4.7
Merged-chr11-105502510-3	chr11	105502410	105502610	+	906.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45775.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	14.54	16.1	17.11	20.51	28.23	9.41	9.3	18.7	8.85	17.57	14.07	11.59
Merged-chr17-67340503-3	chr17	67340409	67340609	+	906.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	ID_B1|SINE|B4	13950.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.63	10.82	15.97	8.04	19.64	20.07	18.27	24.42	14.55	13.56	14.07	15.35
Merged-chr11-117706441-3	chr11	117706333	117706533	+	906.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	52144.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	17.36	7.8	11.98	10.46	25.77	27.91	13.95	13.32	22.03	15.06	14.57	13.16
Merged-chr9-108710912-2	chr9	108710810	108711010	+	906.2666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	18767.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	6.46	7.04	25.1	12.07	10.23	10.98	6.31	10.21	18.88	7.53	20.6	16.6
Merged-chr5-141084493-3	chr5	141084406	141084606	+	906.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83910.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	17.36	10.82	14.26	10.46	16.77	14.74	6.98	12.9	24.98	28.12	31.66	16.6
Merged-chr9-44176063-2	chr9	44175901	44176101	+	906.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	41343.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	2.42	1.01	5.7	1.61	6.55	5.02	5.31	4.01	3.15	6.53	4.52	1.57
Merged-chr8-31031858-2	chr8	31031746	31031946	+	906.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57681.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.81	2.26	2.85	3.22	6.95	5.64	9.3	12.08	39.14	48.7	32.66	33.52
Merged-chr1-56192421-1	chr1	56192321	56192521	+	906.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER92D|LTR|ERV1	173443.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.0	1.51	0.0	3.62	8.18	23.83	12.62	16.07	0.0	0.0	1.0	1.57
Merged-chr1-97662510-3	chr1	97662423	97662623	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-505.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	11.31	10.82	9.7	10.05	17.59	23.83	4.32	14.58	14.36	13.56	24.62	8.14
Merged-chr1-138253647-3	chr1	138253537	138253737	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20101.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	18.17	9.81	23.96	16.09	11.86	13.8	16.94	23.33	12.0	12.05	14.07	7.83
Merged-chr16-30010431-3	chr16	30010322	30010522	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1755.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	12.52	11.32	15.97	16.89	8.18	5.02	15.28	28.04	16.33	9.04	13.06	14.41
Merged-chr15-78860733-3	chr15	78860653	78860853	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5224.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	20.19	16.85	22.25	17.29	19.23	27.28	10.96	22.77	13.57	9.04	8.04	9.71
Merged-chr13-3665537-3	chr13	3665458	3665658	+	906.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31526.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	13.73	16.35	9.13	7.24	15.14	14.42	11.29	16.51	12.19	17.57	20.6	8.77
Merged-chr15-57926145-3	chr15	57926020	57926220	+	906.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	RSINE1|SINE|B4	13921.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	9.69	14.84	11.41	15.69	13.09	18.81	12.95	12.53	20.85	16.07	23.62	13.47
Merged-chr1-55055508-3	chr1	55055405	55055605	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	2735.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	14.13	20.12	15.4	20.91	3.68	4.7	7.64	9.11	27.34	21.09	33.16	14.72
Merged-chr5-29737073-2	chr5	29736963	29737163	+	906.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-1127.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	7.27	5.03	5.13	5.63	6.14	12.86	5.98	12.06	17.31	8.03	14.07	15.35
Merged-chr1-156559349-3	chr1	156559273	156559473	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	CpG	586.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.63	12.32	11.98	8.45	10.23	10.98	13.29	8.19	19.67	23.6	31.15	22.56
Merged-chr1-191163686-2	chr1	191163591	191163791	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001109759, exon 1 of 1)	exon (NM_001109759, exon 1 of 1)	1126.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	12.92	11.82	8.56	15.69	10.23	17.25	6.31	13.99	12.0	7.53	8.04	4.07
Merged-chr8-103970200-1	chr8	103970100	103970300	+	906.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-131425.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.63	1.01	3.42	0.8	12.68	10.35	23.25	20.38	7.87	5.52	11.05	7.21
Merged-chr10-117313339-3	chr10	117313223	117313423	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20455.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	20.19	20.12	10.27	8.45	7.77	21.32	12.29	9.0	19.47	4.02	17.59	3.13
Merged-chr2-27690938-2	chr2	27690818	27691018	+	906.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	13717.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	14.13	11.07	19.97	14.48	12.68	12.86	6.64	12.31	12.39	9.04	8.54	9.08
Merged-chr4-102518049-2	chr4	102517936	102518136	+	906.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52024.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	18.57	15.09	15.4	21.72	0.0	3.76	0.0	6.2	14.16	15.57	8.04	12.53
Merged-chr3-105019896-3	chr3	105019787	105019987	+	906.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33066.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	14.54	6.79	21.68	22.52	19.64	12.23	15.28	22.85	18.29	12.55	39.19	21.62
Merged-chr11-62224141-3	chr11	62224059	62224259	+	906.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-24825.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	21.0	12.07	28.52	7.24	17.59	18.81	18.6	17.3	17.51	25.61	20.1	14.72
Merged-chr6-56384428-2	chr6	56384320	56384520	+	906.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14786.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	8.08	12.07	14.83	19.71	6.55	7.84	11.63	16.96	5.11	3.51	12.06	3.45
Merged-chrX-38181997-3	chrX	38181915	38182115	+	906.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7778.0	NM_020256	56805.0	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	8.48	10.31	7.42	13.67	16.77	17.25	11.29	9.67	12.39	6.53	25.12	6.27
Merged-chr19-55315895-3	chr19	55315810	55316010	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293685)	promoter-TSS (NM_001293685)	126.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	14.94	16.85	7.42	12.47	12.27	22.26	16.28	14.16	15.54	33.14	9.55	14.72
Merged-chr19-11602177-3	chr19	11602080	11602280	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026835, intron 2 of 6)	intron (NM_026835, intron 2 of 6)	2624.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	9.29	17.61	17.11	10.46	13.5	19.76	8.64	9.25	17.9	22.59	20.6	14.1
Merged-chr11-20914127-3	chr11	20914007	20914207	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82999.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	10.5	16.85	15.4	18.1	17.59	13.17	8.64	12.7	27.34	20.59	11.56	14.41
Merged-chr9-102913776-3	chr9	102913682	102913882	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	78862.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	9.69	11.07	15.4	12.87	9.0	13.48	11.29	17.07	20.46	13.05	23.11	11.28
Merged-chr11-98917662-3	chr11	98917589	98917789	+	906.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	9538.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	6.46	16.85	7.99	16.89	8.18	10.35	8.3	10.99	13.77	9.54	4.02	6.58
Merged-chr7-55869422-2	chr7	55869314	55869514	+	906.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	ORR1B2|LTR|ERVL-MaLR	27343.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.25	4.78	1.14	6.44	9.0	10.35	1.66	9.17	14.16	15.06	22.61	19.11
Merged-chr16-57549820-3	chr16	57549720	57549920	+	906.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	578.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	9.29	10.56	18.25	17.7	7.77	25.71	11.63	10.32	17.11	8.03	13.57	4.07
Merged-chr5-114100243-3	chr5	114100161	114100361	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-72.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	11.31	17.1	18.83	4.83	15.14	25.09	14.28	8.47	25.96	28.12	20.1	13.16
Merged-chr6-31121794-3	chr6	31121696	31121896	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-58703.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	11.31	12.32	17.68	14.48	11.05	14.74	18.6	15.42	22.62	19.58	25.63	12.84
Merged-chr13-91697130-3	chr13	91697035	91697235	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-44386.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	6.46	10.82	18.25	14.48	13.91	12.54	14.28	12.5	10.82	9.54	14.07	11.59
Merged-chr16-32798967-3	chr16	32798885	32799085	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1550.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	21.4	22.64	18.25	17.29	12.68	22.89	15.94	5.07	17.7	22.09	30.65	9.08
Merged-chr15-39945177-3	chr15	39945081	39945281	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	20.59	8.3	19.97	19.31	12.27	25.09	16.28	20.86	16.92	17.07	14.57	14.1
Merged-chr3-108904091-3	chr3	108903956	108904156	+	906.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356292, exon 7 of 7)	exon (NM_001356292, exon 7 of 7)	7673.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	12.52	13.08	23.96	12.87	16.77	8.15	10.63	15.25	14.75	7.03	22.11	13.78
Merged-chr1-156467837-3	chr1	156467734	156467934	+	906.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6494.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	8.88	8.8	17.11	12.47	27.0	9.09	15.94	22.21	26.75	16.57	15.07	14.41
Merged-chr17-71251339-3	chr17	71251213	71251413	+	906.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357336)	TTS (NM_001357336)	46659.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	37.55	21.13	25.67	15.69	41.32	59.27	39.53	27.14	16.52	11.55	9.04	9.4
Merged-chr11-11719372-1	chr11	11719272	11719472	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	29195.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.85	3.27	5.7	6.84	4.91	2.2	6.98	6.7	3.54	7.53	2.01	0.63
Merged-chr15-40020726-1	chr15	40020626	40020826	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24462.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.81	0.25	1.14	4.02	3.27	3.14	6.98	7.82	0.79	0.0	0.0	0.63
Merged-chr16-57915379-1	chr16	57915279	57915479	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-160642.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	3.63	2.52	3.99	6.84	9.41	4.08	9.3	11.24	3.34	9.04	11.05	2.51
Merged-chr1-183633896-1	chr1	183633796	183633996	+	906.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115081.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	1.62	0.0	1.14	0.0	2.05	1.88	0.0	0.5	7.28	1.0	9.55	11.9
Merged-chr17-64720793-1	chr17	64720693	64720893	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-46318.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	1.62	4.02	6.28	4.02	8.59	6.9	4.98	9.48	8.26	3.51	9.04	6.27
Merged-chr10-82973709-1	chr10	82973609	82973809	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11788.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	3.23	2.01	5.13	8.85	6.14	14.11	10.63	14.44	0.39	2.01	1.0	0.0
Merged-chr14-25377606-1	chr14	25377506	25377706	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81579.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.06	4.53	5.13	2.01	13.91	12.86	12.62	5.02	5.31	3.01	8.04	7.21
Merged-chr4-139296846-1	chr4	139296746	139296946	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151463, intron 9 of 10)	intron (NR_151463, intron 9 of 10)	13862.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.21	9.31	2.85	1.21	9.41	15.99	5.31	2.33	3.54	11.05	9.04	4.39
Merged-chr6-25726569-1	chr6	25726469	25726669	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36589.0	NM_010338	14763.0	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	4.04	5.53	6.28	10.05	9.82	11.29	1.66	11.27	6.1	1.0	13.57	5.01
Merged-chr2-165884746-3	chr2	165884656	165884856	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	82.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	13.33	13.33	4.56	11.26	9.0	21.01	15.28	12.95	35.6	30.63	23.62	29.13
Merged-chr3-14848946-1	chr3	14848846	14849046	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14592.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.81	0.5	4.56	1.21	2.86	0.63	5.31	3.9	1.38	0.5	1.0	0.63
Merged-chr16-58017539-2	chr16	58017438	58017638	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-262801.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	6.06	7.8	15.97	24.13	19.23	19.13	17.27	31.32	0.79	0.0	1.0	0.0
Merged-chr5-17820655-1	chr5	17820555	17820755	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	15241.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	2.42	3.02	7.42	8.45	12.68	1.88	10.63	9.93	4.72	2.01	5.02	3.45
Merged-chr5-113099704-1	chr5	113099604	113099804	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172884, intron 2 of 7)	intron (NM_172884, intron 2 of 7)	-18120.0	NM_001359009	12962.0	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	11.71	9.56	5.13	0.8	4.5	2.51	3.99	3.0	4.92	3.51	1.51	4.39
Merged-chr3-152928774-1	chr3	152928674	152928874	+	906.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	53433.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.63	0.0	0.93	8.85	18.08	21.1	10.34
Merged-chr11-29546348-3	chr11	29546245	29546445	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133767)	TTS (NM_133767)	-1605.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	11.31	6.54	13.69	8.04	19.64	16.93	27.24	13.65	22.62	18.08	18.09	12.84
Merged-chr4-62674045-4	chr4	62673861	62674061	+	905.974976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310706)	promoter-TSS (NM_001310706)	-13.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.81	6.29	4.56	6.84	2.86	4.08	3.65	5.27	3.34	7.53	5.53	5.95
Merged-chr10-128036184-2	chr10	128036094	128036294	+	905.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013608, intron 1 of 7)	CpG	848.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	10.5	11.07	14.26	14.88	5.32	12.54	8.3	8.92	14.75	10.04	18.59	16.6
Merged-chr4-109271975-3	chr4	109271877	109272077	+	905.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8298.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	11.31	7.04	24.53	17.29	11.05	16.31	7.31	19.12	15.74	16.57	19.09	11.9
Merged-chr6-114874383-5	chr6	114874275	114874475	+	905.934265	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	47446.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	8.08	7.8	12.55	5.63	9.0	13.48	8.97	6.08	8.46	7.03	7.03	7.83
Merged-chr11-29151759-3	chr11	29151665	29151865	+	905.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027869, intron 18 of 27)	ORR1D2|LTR|ERVL-MaLR	21014.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	8.08	11.57	13.12	8.04	40.5	50.49	18.6	22.29	37.57	29.62	36.18	10.96
Merged-chr5-150840798-3	chr5	150840703	150840903	+	905.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111804.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	13.33	13.83	9.13	11.66	17.18	12.86	19.6	24.84	28.72	8.54	24.62	17.23
Merged-chr7-119879384-2	chr7	119879275	119879475	+	905.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	16083.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	6.46	9.81	4.56	3.62	9.82	24.77	19.93	12.17	23.41	25.61	26.63	7.52
Merged-chr7-90352417-3	chr7	90352318	90352518	+	905.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040085, intron 2 of 18)	intron (NM_001040085, intron 2 of 18)	-34563.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	12.92	9.06	14.83	12.07	0.82	7.84	9.97	12.59	12.59	6.53	18.09	5.33
Merged-chr12-110417463-2	chr12	110417368	110417568	+	905.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-29711.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.23	2.52	6.28	2.41	13.5	12.23	11.29	11.69	12.78	9.54	19.6	14.41
Merged-chr10-80034187-3	chr10	80034069	80034269	+	905.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5490.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	26.65	26.41	10.27	17.7	23.32	48.92	10.63	13.88	37.37	38.16	18.09	8.77
Merged-chr5-102030067-3	chr5	102029970	102030170	+	905.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	39851.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	10.9	6.54	15.97	23.33	22.5	18.5	19.6	30.14	25.77	19.58	31.15	23.18
Merged-chr11-114903298-2	chr11	114903225	114903425	+	905.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13284.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.63	1.76	1.14	5.23	9.82	10.98	9.97	14.94	7.47	14.56	7.54	6.89
Merged-chr3-84504499-3	chr3	84504391	84504591	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293801, intron 7 of 7)	intron (NM_001293801, intron 7 of 7)	-24052.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	8.48	12.07	7.99	21.32	29.46	35.12	46.5	53.13	15.34	7.53	21.1	13.78
Merged-chr1-136675929-3	chr1	136675830	136676030	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7466.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	12.52	10.56	11.41	20.91	12.68	11.6	10.3	12.11	11.21	16.57	25.12	13.47
Merged-chr4-133108062-3	chr4	133107972	133108172	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22561.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	15.34	19.12	45.07	24.53	38.46	16.31	25.58	42.03	12.0	15.57	20.1	9.4
Merged-chr7-55850981-3	chr7	55850879	55851079	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	8908.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	14.13	10.31	9.13	15.28	9.0	10.03	13.29	14.72	13.96	2.51	17.59	6.89
Merged-chr15-41163807-3	chr15	41163690	41163890	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9911.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	19.38	10.31	10.84	12.47	21.27	33.87	5.98	29.83	19.67	10.54	15.07	14.72
Merged-chr17-79355084-2	chr17	79354973	79355173	+	905.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	18.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	6.06	3.52	3.99	4.83	6.55	5.33	8.97	11.27	13.18	15.57	20.1	16.92
Merged-chr17-47864697-3	chr17	47864585	47864785	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29994.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	11.71	9.31	2.28	11.66	11.45	23.52	9.63	12.11	32.26	21.59	30.15	12.22
Merged-chr11-32534454-6	chr11	32534382	32534582	+	905.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	1216.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.46	7.8	0.57	1.21	4.09	4.7	7.64	2.72	5.51	6.03	5.02	5.95
Merged-chr4-83433061-3	chr4	83432964	83433164	+	905.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029949, intron 3 of 8)	intron (NM_029949, intron 3 of 8)	15340.0	NM_029949	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	14.54	19.37	21.11	20.11	13.5	19.13	23.58	24.28	5.7	9.54	25.12	10.34
Merged-chr18-67369804-3	chr18	67369707	67369907	+	905.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20924.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	23.02	6.79	2.85	16.49	15.96	19.44	8.97	18.17	22.03	33.14	41.71	14.41
Merged-chr9-48414354-1	chr9	48414254	48414454	+	905.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-39990.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.0	0.5	0.0	0.0	0.41	0.0	0.66	0.0	13.37	18.08	20.6	7.83
Merged-chr5-122662740-3	chr5	122662639	122662839	+	905.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038845, intron 5 of 12)	Lx8|LINE|L1	12315.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	10.09	11.57	14.83	8.45	8.18	14.42	10.96	15.62	23.21	15.57	21.61	15.66
Merged-chr2-168583244-3	chr2	168583205	168583405	+	905.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	7060.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	12.11	12.83	19.4	16.89	12.68	9.41	9.97	10.79	9.44	3.01	17.59	5.95
Merged-chr18-6240885-3	chr18	6240800	6241000	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008448, intron 1 of 25)	CpG	624.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	9.69	10.82	7.42	7.24	9.82	21.01	12.29	16.32	11.41	13.56	18.09	7.21
Merged-chr7-113770527-3	chr7	113770439	113770639	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145584, intron 1 of 15)	intron (NM_145584, intron 1 of 15)	4541.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	10.09	6.04	15.97	24.94	11.45	8.47	14.62	19.91	18.88	7.03	20.1	9.71
Merged-chr12-55019567-3	chr12	55019455	55019655	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33219.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	9.29	14.34	11.41	3.22	17.18	8.47	10.96	14.66	19.08	26.11	22.11	13.16
Merged-chr11-77467990-3	chr11	77467895	77468095	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139130, intron 5 of 9)	CpG	4082.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	18.98	14.84	2.85	13.27	15.14	21.64	7.31	8.72	13.77	9.54	20.1	10.34
Merged-chr17-52725351-2	chr17	52725252	52725452	+	905.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	122643.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	7.27	0.75	7.42	12.07	26.59	12.54	11.29	14.24	15.93	6.53	12.56	5.33
Merged-chr11-44441405-1	chr11	44441305	44441505	+	905.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29143.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.0	0.25	0.0	0.0	0.41	1.88	0.66	0.0	21.05	8.54	27.13	11.59
Merged-chr6-143146963-3	chr6	143146842	143147042	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	6989.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	12.11	7.04	14.26	16.89	12.68	14.42	12.29	18.81	17.7	14.56	23.11	10.96
Merged-chr15-67733201-3	chr15	67733122	67733322	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	506453.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	25.44	15.09	22.82	30.97	2.45	5.64	2.33	4.91	27.54	28.62	39.7	16.92
Merged-chr13-99315013-3	chr13	99314906	99315106	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29672.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	8.08	13.58	13.12	15.69	15.96	17.87	11.63	18.36	21.05	19.08	13.06	11.59
Merged-chr17-26638040-1	chr17	26637940	26638140	+	905.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 7 of 9)	intron (NM_026170, intron 7 of 9)	-38356.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	2.02	2.01	1.14	4.02	10.23	0.0	10.63	14.55	1.38	0.0	3.52	4.07
Merged-chr18-37655743-3	chr18	37655629	37655829	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-6216.0	NM_033584	93709.0	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	10.09	12.58	14.83	19.31	19.64	9.41	20.59	15.39	7.87	8.03	13.57	13.16
Merged-chr14-25736766-3	chr14	25736672	25736872	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	32084.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	11.31	9.06	25.1	32.18	17.59	16.93	25.58	41.83	15.34	17.57	41.2	19.42
Merged-chr1-138543692-1	chr1	138543592	138543792	+	905.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 3 of 9)	RLTR11B|LTR|ERVK	76065.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.25	4.28	9.7	2.82	3.68	10.03	8.97	8.41	5.7	7.53	9.04	8.77
Merged-chr2-80079770-2	chr2	80079659	80079859	+	905.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-40857.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.65	6.79	5.13	16.89	11.86	11.6	18.27	32.86	14.95	11.05	15.58	10.65
Merged-chr13-101719577-4	chr13	101719481	101719681	+	905.65625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-26951.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.27	7.55	2.85	13.27	16.77	8.78	11.29	16.23	13.18	12.05	9.55	9.08
Merged-chr11-70166536-3	chr11	70166445	70166645	+	905.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010796)	promoter-TSS (NM_010796)	-78.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	12.92	12.83	7.99	20.11	22.5	17.56	14.95	27.56	17.7	9.54	24.62	17.23
Merged-chr12-85477457-3	chr12	85477350	85477550	+	905.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010234)	TTS (NM_010234)	3560.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	25.84	31.19	18.25	9.25	35.59	17.87	7.31	8.47	23.6	39.67	12.06	8.77
Merged-chr4-9705936-3	chr4	9705826	9706026	+	905.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-36582.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	10.9	8.8	17.11	18.5	12.27	12.54	14.95	31.15	23.41	11.05	20.6	18.8
Merged-chr18-52463719-3	chr18	52463612	52463812	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-1981.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	15.34	23.9	13.12	5.23	16.36	18.5	9.63	15.31	73.56	58.24	49.24	46.68
Merged-chr11-23855537-3	chr11	23855444	23855644	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39726.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	11.31	7.55	10.27	6.44	16.36	16.93	14.62	10.26	16.13	14.56	23.62	6.58
Merged-chr10-14148138-3	chr10	14148016	14148216	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 9 of 9)	RLTR17|LTR|ERVK	181737.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.88	17.86	8.56	13.67	22.91	30.73	25.91	20.97	38.16	21.09	29.14	28.82
Merged-chr16-94290290-3	chr16	94290185	94290385	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360045)	promoter-TSS (NM_001360045)	6.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	12.92	12.32	10.27	16.49	14.73	19.44	15.28	12.42	25.96	14.06	25.63	10.02
Merged-chr12-85467155-3	chr12	85467064	85467264	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	13.33	3.77	17.11	17.7	19.23	15.68	34.88	37.49	15.74	11.55	36.68	10.96
Merged-chr2-131479102-2	chr2	131478996	131479196	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-12766.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	7.27	3.52	7.42	5.63	7.77	5.64	10.96	8.16	15.54	14.56	23.62	15.98
Merged-chr16-70330854-2	chr16	70330741	70330941	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	16892.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.44	5.53	1.14	4.83	9.0	10.98	12.95	18.22	49.37	58.75	53.77	22.87
Merged-chr10-27378262-2	chr10	27378163	27378363	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-11603.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	11.31	9.31	16.54	33.78	27.41	7.21	22.26	45.45	3.34	2.01	4.02	5.95
Merged-chr10-91234931-1	chr10	91234831	91235031	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14312.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	6.86	6.79	3.42	6.44	6.55	10.03	10.96	11.27	4.52	1.0	5.53	9.08
Merged-chr18-62045680-2	chr18	62045612	62045812	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	92637.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	2.02	1.26	6.28	7.24	6.95	3.45	1.99	7.46	29.11	31.13	47.23	27.88
Merged-chr16-94544813-4	chr16	94544730	94544930	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18201.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.46	9.56	9.13	8.85	14.73	10.98	14.28	7.51	24.98	31.13	22.11	14.1
Merged-chr6-135299225-1	chr6	135299125	135299325	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11159.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	2.02	4.78	5.13	1.61	12.27	7.53	20.26	37.15	3.54	5.52	3.01	6.89
Merged-chr12-34663915-1	chr12	34663815	34664015	+	905.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-135026.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	1.76	0.0	0.0	2.05	0.0	0.0	0.34	13.77	17.57	16.08	9.08
Merged-chr13-95951236-3	chr13	95951142	95951342	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59320.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	9.69	9.56	7.99	16.49	11.86	4.39	12.29	13.21	16.52	14.56	22.61	8.46
Merged-chr11-69088640-4	chr11	69088601	69088801	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009497, intron 1 of 4)	CpG	173.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	13.73	22.64	15.97	7.24	15.96	20.07	17.61	14.33	20.26	19.08	20.1	16.92
Merged-chr6-54955298-2	chr6	54955224	54955424	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16337.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.85	1.51	4.56	2.01	3.68	6.27	1.66	4.82	15.14	21.09	14.57	11.59
Merged-chr9-47625655-1	chr9	47625555	47625755	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	95303.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.27	1.51	4.56	8.85	9.82	5.02	7.31	10.99	6.1	4.52	4.52	9.4
Merged-chr10-42018407-3	chr10	42018304	42018504	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034858)	promoter-TSS (NM_001034858)	-22.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	16.96	10.31	5.7	6.44	22.91	13.8	6.98	16.12	17.31	7.03	25.63	5.95
Merged-chr10-100031698-3	chr10	100031610	100031810	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15889.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	8.88	11.32	10.27	13.27	12.68	10.35	15.28	25.49	21.64	6.53	22.61	8.77
Merged-chr17-69396352-3	chr17	69396235	69396435	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12531.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	11.71	11.32	9.7	21.32	14.73	21.32	18.6	9.45	14.95	14.06	12.06	15.35
Merged-chr8-81806979-3	chr8	81806881	81807081	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	464419.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	20.59	11.07	20.54	10.46	28.23	21.64	17.94	21.14	12.78	16.07	30.65	15.35
Merged-chr7-98339252-3	chr7	98339147	98339347	+	905.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18039.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	14.94	7.29	21.68	21.72	20.46	16.93	5.98	16.43	22.42	13.05	25.12	21.93
Merged-chr15-99835266-3	chr15	99835164	99835364	+	905.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-15115.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	22.61	17.36	14.83	18.5	20.46	11.6	9.63	10.82	11.8	9.54	11.05	6.27
Merged-chr10-8816923-3	chr10	8816826	8817026	+	905.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	69144.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	15.75	7.8	29.09	28.56	18.82	22.26	38.53	50.89	21.44	11.05	24.62	15.98
Merged-chr16-24434224-2	chr16	24434129	24434329	+	905.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13862.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.06	3.77	2.85	8.04	7.36	4.39	10.96	10.26	12.59	7.03	16.08	10.34
Merged-chr12-84130161-3	chr12	84130057	84130257	+	905.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028821, intron 4 of 7)	ORR1G|LTR|ERVL-MaLR	15829.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	23.82	9.31	13.69	15.28	11.45	12.54	19.6	26.05	13.77	20.59	24.62	14.41
Merged-chr12-40277780-3	chr12	40277655	40277855	+	905.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	54391.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	10.09	13.33	14.83	8.45	14.32	14.42	14.28	25.77	23.01	11.55	19.6	9.08
Merged-chr11-52097198-3	chr11	52097101	52097301	+	905.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1623.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	14.54	11.82	14.26	6.44	22.91	21.95	10.96	18.93	15.54	10.04	17.08	5.01
Merged-chr9-44326859-3	chr9	44326759	44326959	+	905.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	14.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	14.54	15.85	9.7	8.45	20.86	11.6	19.27	12.73	26.36	15.57	25.63	10.02
Merged-chr7-81529093-3	chr7	81528992	81529192	+	905.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035501)	promoter-TSS (NR_035501)	-824.0	NR_035501	100316717.0		NR_035501	ENSMUSG00000104618	Mir1839	mir-1839|mmu-mir-1839	microRNA 1839	ncRNA	7.67	12.07	18.25	15.69	9.82	12.23	4.65	9.93	14.75	7.03	13.57	10.65
Merged-chr18-5805756-2	chr18	5805652	5805852	+	905.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE2|SINE|Deu	213105.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	8.88	5.53	3.99	5.63	19.64	15.37	25.58	15.2	13.57	8.54	15.58	8.77
Merged-chr11-50025599-2	chr11	50025497	50025697	+	905.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290749, exon 1 of 8)	exon (NM_001290749, exon 1 of 8)	266.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	21.4	18.61	17.68	11.66	8.59	7.21	24.58	10.4	9.83	16.07	19.6	11.9
Merged-chr11-69266487-3	chr11	69266395	69266595	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29473.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	10.9	12.83	11.98	13.27	12.68	10.35	11.96	10.6	12.59	19.08	21.1	9.71
Merged-chr11-64435216-3	chr11	64435116	64435316	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178870)	promoter-TSS (NM_178870)	-116.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	24.23	18.86	25.67	34.99	1.64	8.15	7.31	6.2	23.01	32.64	29.65	28.82
Merged-chr12-102385050-2	chr12	102384962	102385162	+	905.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	54751.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.08	3.77	6.85	4.02	11.05	5.96	2.66	11.02	16.13	17.07	15.07	3.76
Merged-chr2-27764216-3	chr2	27764109	27764309	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011305)	TTS (NM_011305)	53626.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.04	8.55	9.13	12.87	12.68	12.54	15.61	6.62	12.19	13.56	19.6	7.83
Merged-chr5-103914550-1	chr5	103914450	103914650	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3291.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	13.33	19.62	14.83	0.8	3.27	12.54	2.66	0.64	7.67	8.54	14.57	2.82
Merged-chr12-41438678-3	chr12	41438568	41438768	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	47389.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	7.27	9.06	36.51	26.55	14.73	8.47	27.24	45.65	11.8	6.53	18.09	15.04
Merged-chr9-86544741-3	chr9	86544648	86544848	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 33 of 38)	intron (NM_177208, intron 33 of 38)	27094.0	NM_001163746	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	8.88	6.54	5.7	4.83	17.18	6.27	15.28	17.24	52.71	50.71	28.14	14.41
Merged-chr9-104604854-1	chr9	104604754	104604954	+	905.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	35371.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.63	2.52	6.85	10.05	15.55	6.59	14.62	31.88	2.36	0.0	0.0	0.0
Merged-chr18-60978043-3	chr18	60977935	60978135	+	905.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14481.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	12.92	7.29	11.98	12.47	13.5	11.6	9.63	16.79	13.37	10.54	22.61	11.9
Merged-chr17-31437222-2	chr17	31437090	31437290	+	905.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008804, intron 4 of 18)	L1MD1|LINE|L1	50956.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	3.63	8.3	11.98	5.23	11.45	9.72	14.95	9.53	2.75	6.03	7.03	6.27
Merged-chr9-103336673-3	chr9	103336578	103336778	+	905.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176979, intron 19 of 27)	Tigger1|DNA|TcMar-Tigger	28301.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	6.46	10.06	3.42	16.09	9.41	8.47	11.96	27.11	11.6	14.06	21.1	11.9
Merged-chr17-47609405-3	chr17	47609310	47609510	+	905.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016859, intron 1 of 6)	L2|LINE|L2	2082.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	13.33	11.57	15.97	8.85	13.5	9.09	4.32	9.73	14.16	8.54	25.12	12.84
Merged-chr2-49349891-3	chr2	49349776	49349976	+	905.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-101610.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	13.73	8.8	22.25	25.34	27.41	12.23	27.57	45.87	11.8	14.56	47.23	26.31
Merged-chr1-64377956-3	chr1	64377848	64378048	+	905.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154856.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	11.71	5.53	10.27	12.07	17.59	9.09	14.62	31.93	27.93	8.54	31.15	14.72
Merged-chr10-41958900-3	chr10	41958767	41958967	+	905.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	59515.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	11.31	7.55	5.7	10.46	5.73	17.56	16.28	20.44	25.37	19.08	18.09	10.02
Merged-chr3-96305165-3	chr3	96305039	96305239	+	905.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-11170.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	8.08	7.8	13.69	20.91	17.59	21.64	32.55	31.07	18.1	7.53	36.68	14.1
Merged-chr12-79015103-1	chr12	79015003	79015203	+	905.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7826.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.81	1.51	1.14	0.0	11.05	21.64	12.29	7.49	1.18	7.03	1.0	0.0
Merged-chr5-103472880-3	chr5	103472789	103472989	+	905.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	47697.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	13.33	11.82	18.25	17.29	13.09	14.42	5.98	20.86	22.82	9.54	19.09	10.34
Merged-chr2-62648807-3	chr2	62648706	62648906	+	905.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2551.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	7.27	20.12	16.54	13.27	8.18	10.35	6.98	9.39	16.13	12.55	14.07	8.77
Merged-chr9-107556514-3	chr9	107556392	107556592	+	905.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019713, intron 1 of 4)	B2_Mm2|SINE|B2	1909.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	12.92	9.56	21.11	12.87	8.59	12.23	8.3	14.38	13.37	15.06	19.09	10.65
Merged-chr8-41133659-3	chr8	41133529	41133729	+	905.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005863)	promoter-TSS (NM_001005863)	97.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	7.67	11.82	5.13	9.25	9.41	4.7	14.28	9.93	7.47	11.05	17.59	15.04
Merged-chr8-120110412-3	chr8	120110295	120110495	+	905.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3757.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	11.31	8.55	5.7	4.42	9.41	11.29	15.61	8.41	17.7	23.1	23.11	11.28
Merged-chr5-141038564-3	chr5	141038454	141038654	+	905.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37958.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	31.5	17.36	44.5	41.02	35.18	18.19	31.22	34.6	10.23	16.07	36.68	18.8
Merged-chr16-95752697-3	chr16	95752601	95752801	+	905.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50294.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	12.52	12.32	11.98	16.09	20.86	29.16	15.61	17.5	24.19	10.54	45.73	14.1
Merged-chr9-44652179-3	chr9	44652081	44652281	+	905.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21052.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	6.06	14.84	18.83	18.5	27.41	24.46	8.64	17.44	23.6	11.55	38.19	14.72
Merged-chr1-151661783-3	chr1	151661676	151661876	+	905.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	90403.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	11.31	5.03	7.99	11.26	21.68	10.66	9.97	14.75	15.34	7.53	17.08	4.07
Merged-chr9-65293225-3	chr9	65293115	65293315	+	905.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1045.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	14.13	10.82	6.28	5.23	22.09	22.26	3.32	5.64	11.6	13.56	6.53	1.88
Merged-chrX-13798955-3	chrX	13798873	13799073	+	905.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 1 of 26)	ORR1E|LTR|ERVL-MaLR	47583.0	NM_001284505	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	12.11	5.28	6.85	29.76	9.41	11.92	9.3	21.45	11.8	11.55	27.64	9.71
Merged-chr7-75500999-3	chr7	75500912	75501112	+	905.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 1 of 36)	MTE2a|LTR|ERVL-MaLR	45478.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	31.9	27.92	14.26	16.09	18.0	24.46	10.96	19.74	21.83	14.06	12.06	8.46
Merged-chr5-92093904-3	chr5	92093800	92094000	+	905.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-10156.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	14.54	15.09	9.13	16.89	13.09	7.84	5.98	11.13	16.13	10.04	9.55	11.9
Merged-chr7-19698258-3	chr7	19698137	19698337	+	905.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009696, exon 2 of 4)	5' UTR (NM_009696, exon 2 of 4)	161.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	7.27	10.06	10.84	13.27	20.86	17.87	24.91	33.42	24.39	24.6	27.64	15.98
Merged-chr8-75071818-3	chr8	75071846	75072046	+	905.05835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21672.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.44	8.55	5.13	7.24	11.86	6.9	4.98	7.37	8.06	3.01	11.05	7.21
Merged-chr19-21115939-3	chr19	21115833	21116033	+	905.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11223.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	10.9	9.81	15.97	14.08	29.05	26.03	21.59	26.3	19.08	17.57	36.18	9.08
Merged-chr11-117990137-3	chr11	117990003	117990203	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3246.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	12.11	12.07	18.83	8.04	22.5	22.58	14.95	7.43	23.01	33.64	12.56	16.29
Merged-chr14-47377176-3	chr14	47377101	47377301	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	3341.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.44	2.26	12.55	15.69	22.09	26.34	59.46	49.37	37.57	25.11	62.31	27.25
Merged-chr13-76751232-1	chr13	76751132	76751332	+	905.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 6 of 20)	intron (NM_030174, intron 6 of 20)	366271.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.81	0.0	0.0	0.0	0.82	0.63	1.33	1.99	11.41	7.03	19.6	3.45
Merged-chr4-149666076-1	chr4	149665976	149666176	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029837, intron 2 of 23)	ID_B1|SINE|B4	-2760.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	12.52	6.79	9.13	5.23	18.41	6.59	2.99	9.11	8.46	16.07	7.03	5.01
Merged-chr9-70842016-3	chr9	70841926	70842126	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	92782.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	17.36	7.04	17.11	12.07	16.36	23.52	12.95	12.08	19.28	18.08	23.11	24.12
Merged-chr19-4144094-3	chr19	4143985	4144185	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	4286.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	17.77	15.34	15.97	10.46	27.0	21.01	9.63	8.38	13.37	18.58	26.13	12.22
Merged-chr9-68956712-2	chr9	68956613	68956813	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191367.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	21.4	14.59	18.25	15.28	13.09	6.59	5.65	14.66	2.36	6.03	5.02	5.64
Merged-chr6-113837449-1	chr6	113837349	113837549	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001036684, intron 2 of 19)	MIRb|SINE|MIR	54090.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	6.06	4.28	3.42	4.02	2.45	8.47	2.66	9.06	4.33	0.5	9.55	4.07
Merged-chr1-86492447-1	chr1	86492347	86492547	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34110.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	8.88	3.52	0.0	5.63	14.73	4.7	1.0	8.64	10.82	4.52	5.02	4.07
Merged-chr19-53781052-3	chr19	53780957	53781157	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	103751.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	12.92	8.3	13.12	11.26	18.41	17.87	14.62	19.07	25.37	15.06	32.16	16.92
Merged-chr6-129353960-1	chr6	129353860	129354060	+	905.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177686, intron 3 of 5)	intron (NM_177686, intron 3 of 5)	3716.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	4.44	5.53	8.56	1.61	4.09	4.39	1.99	1.54	13.37	12.05	6.53	3.13
Merged-chr2-91052151-2	chr2	91052049	91052249	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-1867.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	10.5	9.81	4.56	6.44	4.5	11.6	6.31	8.97	7.87	3.51	16.08	1.88
Merged-chr1-185224386-1	chr1	185224286	185224486	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 2 of 34)	L1M4|LINE|L1	-18540.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	6.46	5.03	4.56	8.45	10.23	7.84	3.32	8.41	6.69	3.51	8.04	3.45
Merged-chr1-88456901-1	chr1	88456801	88457001	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	49891.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	4.44	4.53	1.14	4.02	12.27	5.02	1.33	7.21	5.7	5.52	9.55	7.52
Merged-chr2-53011467-1	chr2	53011367	53011567	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	153599.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.25	2.01	6.28	4.42	7.36	5.33	8.64	7.79	7.08	3.51	5.53	2.19
Merged-chr14-25461974-3	chr14	25461881	25462081	+	904.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2796.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	42.8	33.96	30.8	10.86	31.91	49.54	34.21	26.58	26.95	14.56	23.62	6.89
Merged-chr2-93217222-3	chr2	93217115	93217315	+	904.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	29667.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	18.57	16.35	12.55	10.86	6.95	19.44	10.3	7.01	31.67	24.1	31.15	9.08
Merged-chr9-27023790-3	chr9	27023678	27023878	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	6316.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	20.19	16.6	14.83	9.25	15.14	12.23	12.62	25.32	25.37	15.06	10.05	16.29
Merged-chr2-90939953-3	chr2	90939870	90940070	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-427.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	9.69	17.1	17.68	16.09	11.45	25.4	18.93	18.73	20.65	23.6	28.14	12.84
Merged-chr9-59551220-3	chr9	59551113	59551313	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	11673.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	18.57	7.04	19.4	14.88	6.55	18.81	8.97	24.53	12.39	14.06	22.61	11.28
Merged-chr13-115097134-3	chr13	115097032	115097232	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	4832.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	22.61	17.86	41.07	59.93	9.0	3.14	15.61	17.19	11.01	9.54	22.11	12.53
Merged-chr10-79924040-5	chr10	79923949	79924149	+	904.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	RLTR12A|LTR|ERVK	-2994.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	14.94	6.54	6.85	11.26	7.36	8.78	9.3	3.25	22.62	13.56	18.09	13.16
Merged-chr7-17090320-3	chr7	17090242	17090442	+	904.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310628, intron 1 of 5)	intron (NM_001310628, intron 1 of 5)	16302.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	8.88	23.39	45.07	30.57	19.64	11.29	4.98	10.26	29.31	28.62	25.63	18.48
Merged-chr2-104888183-3	chr2	104888097	104888297	+	904.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177600, intron 1 of 17)	MIRb|SINE|MIR	1873.0	NM_177600	211936.0	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	8.88	11.82	13.12	18.1	17.59	13.17	18.93	19.43	12.59	13.56	16.08	5.01
Merged-chr5-3503940-2	chr5	3503853	3504053	+	904.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-39880.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.88	3.77	8.56	12.07	19.23	11.92	10.96	12.67	14.16	6.03	19.09	8.46
Merged-chr10-20046313-3	chr10	20046232	20046432	+	904.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	-102588.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.86	6.54	20.54	13.67	14.73	7.84	11.96	21.25	15.74	10.54	19.6	10.02
Merged-chr16-44126667-3	chr16	44126587	44126787	+	904.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	12572.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	10.9	6.79	19.97	11.26	12.27	1.57	10.63	17.36	22.03	14.56	20.6	13.16
Merged-chr2-145510880-3	chr2	145510786	145510986	+	904.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	44096.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	15.34	7.8	16.54	34.99	15.55	11.6	11.29	16.29	17.9	8.54	15.58	20.36
Merged-chr18-4351418-2	chr18	4351310	4351510	+	904.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1543.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.46	4.28	14.26	18.5	10.64	5.02	20.26	18.34	11.01	5.52	14.57	14.72
Merged-chr4-123611231-4	chr4	123611110	123611310	+	904.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	B1_Mus2|SINE|Alu	-5210.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	5.25	4.02	6.85	5.23	9.41	1.88	5.98	2.36	9.05	15.57	7.54	6.58
Merged-chr3-27283565-2	chr3	27283474	27283674	+	904.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33503.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.85	5.53	2.28	8.85	9.0	18.5	10.63	18.0	23.41	10.54	21.61	12.53
Merged-chr5-123683771-3	chr5	123683678	123683878	+	904.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	CpG	583.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	12.92	7.04	15.97	6.44	11.86	11.92	15.61	8.16	16.92	27.11	11.05	18.17
Merged-chr2-29890443-3	chr2	29890339	29890539	+	904.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013615, intron 1 of 16)	CpG	376.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	9.69	18.11	7.42	11.26	12.68	16.62	6.64	13.88	14.95	19.58	21.1	16.29
Merged-chr17-47842465-3	chr17	47842350	47842550	+	904.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7759.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	16.15	10.56	4.56	17.7	9.0	14.74	7.31	12.28	16.72	14.56	15.07	7.83
Merged-chr3-146584135-3	chr3	146584020	146584220	+	904.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019957, intron 6 of 6)	(GA)n|Simple_repeat|Simple_repeat	-13029.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	11.71	11.57	17.11	10.86	13.91	21.64	17.94	19.79	10.62	5.02	16.58	8.14
Merged-chr9-106242982-3	chr9	106242886	106243086	+	904.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020559, intron 3 of 10)	intron (NM_020559, intron 3 of 10)	4744.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	18.57	28.42	11.98	10.86	18.82	23.83	12.95	16.12	17.31	17.57	24.62	7.52
Merged-chrX-53607922-1	chrX	53607822	53608022	+	904.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028375)	promoter-TSS (NM_028375)	0.0	NM_028375	72865.0	Mm.158897	NM_028375	ENSMUSG00000051851	Rtl8c	2900027G03Rik|Cxx1c|Mar8.1|Mart8a	retrotransposon Gag like 8C	protein-coding	4.85	5.03	7.42	13.67	14.32	12.23	6.64	13.32	9.64	4.52	18.59	5.33
Merged-chr10-117147870-6	chr10	117147767	117147967	+	904.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	CpG	607.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	10.9	9.31	2.28	4.83	3.68	6.27	4.98	4.88	11.41	10.04	17.08	2.51
Merged-chr16-81200644-4	chr16	81200510	81200710	+	904.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010954)	promoter-TSS (NM_010954)	-87.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	9.29	9.31	9.13	5.23	11.05	8.15	8.97	12.84	14.75	15.06	25.12	9.4
Merged-chr10-68465061-3	chr10	68464950	68465150	+	904.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	76825.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	18.57	10.31	15.4	17.7	9.82	19.44	18.93	24.17	26.36	16.07	18.09	9.71
Merged-chr9-40730927-2	chr9	40730806	40731006	+	904.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	44942.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	10.09	6.54	13.69	6.44	7.36	9.72	16.94	11.5	5.11	3.51	1.0	3.45
Merged-chr15-80037397-3	chr15	80037295	80037495	+	904.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4a|LINE|L1	-22587.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	8.88	11.57	19.97	10.05	26.18	30.73	27.24	32.47	29.31	31.63	22.61	18.8
Merged-chr17-27057114-3	chr17	27057050	27057250	+	904.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-154.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	15.75	13.83	10.27	13.27	20.46	23.2	19.6	16.21	9.44	21.59	22.61	5.95
Merged-chr16-14378781-3	chr16	14378671	14378871	+	904.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	17213.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	16.15	11.57	13.69	6.84	11.45	10.98	3.99	8.47	14.36	9.54	15.58	9.71
Merged-chr2-166656353-3	chr2	166656241	166656441	+	904.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57491.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	17.77	9.06	19.97	14.48	18.0	23.83	23.92	20.07	28.72	23.1	32.16	21.3
Merged-chr3-59241761-3	chr3	59241660	59241860	+	904.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 20 of 43)	intron (NM_177855, intron 20 of 43)	21225.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	16.96	18.11	11.98	20.51	32.32	25.09	9.97	23.55	13.77	21.59	21.1	7.83
Merged-chrX-73639394-2	chrX	73639298	73639498	+	904.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029352)	promoter-TSS (NM_029352)	-43.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	16.56	10.56	5.7	12.87	11.45	7.84	8.64	13.96	8.06	11.05	10.05	7.83
Merged-chr15-9629888-3	chr15	9629799	9629999	+	904.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-100023.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	3.63	12.32	12.55	14.08	10.64	5.64	7.31	21.84	10.82	6.03	22.11	14.72
Merged-chr2-119336118-3	chr2	119336022	119336222	+	904.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019454)	TTS (NM_019454)	-9925.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	12.11	10.56	17.68	12.07	15.96	20.07	14.95	8.19	14.16	16.07	12.56	3.13
Merged-chr12-110978621-2	chr12	110978531	110978731	+	904.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-13.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	13.73	12.58	21.68	10.86	19.64	15.37	12.29	7.07	15.34	13.56	18.59	11.9
Merged-chr10-17727767-5	chr10	17727630	17727830	+	904.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4502.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	12.92	11.07	7.99	7.24	13.5	8.15	12.95	11.69	5.7	15.06	6.53	10.02
Merged-chr1-186202726-2	chr1	186202612	186202812	+	904.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85402.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	8.08	12.07	23.96	22.52	9.0	9.09	4.98	15.45	0.59	3.51	1.51	0.0
Merged-chr13-41606954-3	chr13	41606842	41607042	+	904.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	726.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	18.17	8.8	31.95	12.87	13.5	14.42	12.62	26.61	17.7	14.06	43.21	22.24
Merged-chrX-20379790-3	chrX	20379686	20379886	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290643, intron 2 of 5)	RMER15|LTR|ERVL	15305.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	21.8	17.36	12.55	10.46	24.55	18.5	11.63	23.13	28.52	22.09	18.09	11.59
Merged-chr17-74874578-3	chr17	74874471	74874671	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-130958.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	11.31	5.03	16.54	19.31	6.55	11.92	10.96	12.7	22.82	19.58	29.14	16.6
Merged-chr7-100446503-3	chr7	100446390	100446590	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 28 of 32)	intron (NM_001017985, intron 28 of 32)	-26501.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	12.52	8.8	10.27	12.07	17.18	26.34	13.62	12.2	17.9	25.11	23.11	10.96
Merged-chr12-36190568-3	chr12	36190467	36190667	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	27651.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	19.38	12.32	20.54	13.67	14.73	20.7	18.6	28.6	10.03	11.55	22.61	9.4
Merged-chr7-92975513-3	chr7	92975394	92975594	+	904.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100241.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.23	11.57	3.42	14.08	13.91	6.27	9.97	13.57	14.75	11.55	11.05	14.1
Merged-chr16-92430903-3	chr16	92430804	92431004	+	904.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30826.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	16.56	10.82	10.27	11.66	18.0	20.7	13.29	28.6	20.26	12.55	35.68	16.6
Merged-chr3-38202421-3	chr3	38202313	38202513	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040541)	TTS (NR_040541)	5706.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	10.5	12.32	12.55	11.66	23.73	20.07	18.27	22.99	27.93	34.65	28.64	11.59
Merged-chr7-125542057-3	chr7	125541944	125542144	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10238.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	18.17	8.55	14.83	11.66	17.18	18.19	10.63	10.77	18.1	11.55	12.06	15.04
Merged-chr10-127421696-3	chr10	127421601	127421801	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	834.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	17.36	14.59	18.25	11.26	7.77	18.5	4.32	15.08	18.69	20.08	19.09	9.08
Merged-chr13-42244617-3	chr13	42244510	42244710	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56866.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	7.27	9.81	21.68	13.27	25.36	39.2	18.27	23.41	24.59	14.06	16.08	18.8
Merged-chr2-35452593-2	chr2	35452483	35452683	+	904.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	8866.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	18.98	10.06	33.09	15.28	9.41	11.92	33.88	27.5	9.83	3.01	12.06	3.13
Merged-chr13-113800422-3	chr13	113800319	113800519	+	904.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	5911.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	22.21	18.61	33.66	36.6	15.96	8.15	15.61	21.84	10.62	17.07	18.09	11.28
Merged-chr3-93547342-3	chr3	93547286	93547486	+	904.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7731.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	12.11	13.08	6.85	15.69	13.5	8.78	18.93	13.77	10.82	21.09	25.12	9.71
Merged-chr6-148352732-1	chr6	148352632	148352832	+	904.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	-1924.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	3.23	6.29	5.7	4.02	14.32	1.25	7.31	10.09	1.77	1.0	5.02	0.0
Merged-chr12-3860872-2	chr12	3860761	3860961	+	904.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	1383.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.23	2.52	14.83	12.87	12.68	14.11	15.61	35.19	9.64	4.52	9.04	11.59
Merged-chr10-81603005-3	chr10	81602907	81603107	+	904.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2107.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	19.38	12.58	1.71	8.85	11.05	15.05	7.64	15.08	14.16	20.59	8.04	15.35
Merged-chr10-19216451-3	chr10	19216337	19216537	+	904.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	49199.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	10.9	11.07	11.41	10.05	13.91	22.26	5.98	14.27	15.54	13.56	25.12	10.96
Merged-chr3-127634239-3	chr3	127634115	127634315	+	904.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009718, exon 2 of 2)	exon (NM_009718, exon 2 of 2)	1079.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	13.33	8.55	7.42	14.08	16.36	17.87	13.62	19.91	18.49	17.57	31.15	15.98
Merged-chr9-7571733-3	chr9	7571632	7571832	+	904.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310717, intron 1 of 9)	intron (NM_001310717, intron 1 of 9)	336.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	12.52	12.58	13.69	12.07	16.36	22.58	13.62	12.56	29.7	34.65	35.17	9.4
Merged-chr6-108827720-3	chr6	108827618	108827818	+	904.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-923.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	8.08	9.81	13.12	12.47	15.55	10.98	8.64	15.14	19.87	22.09	20.6	10.65
Merged-chr1-20933631-2	chr1	20933511	20933711	+	904.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355122, intron 2 of 2)	intron (NM_001355122, intron 2 of 2)	15771.0	NM_001355122	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	6.46	15.34	14.83	25.74	23.73	12.23	7.64	21.5	7.47	2.51	16.08	6.27
Merged-chr6-108340541-2	chr6	108340448	108340648	+	904.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 5 of 61)	L2a|LINE|L2	127452.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	13.73	16.6	11.41	10.86	15.96	11.6	11.29	15.79	0.0	0.0	0.0	0.0
Merged-chr6-38381481-3	chr6	38381358	38381558	+	904.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153600)	promoter-TSS (NM_153600)	-66.0	NM_153600	264134.0	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|Ift56|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	11.31	13.83	1.71	9.65	12.68	10.03	11.96	12.81	15.54	26.11	21.1	8.77
Merged-chr1-40116604-3	chr1	40116471	40116671	+	904.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	30478.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	10.5	17.86	13.12	15.28	19.23	21.01	9.63	18.62	16.13	21.09	21.1	7.83
Merged-chr6-87187089-3	chr6	87186994	87187194	+	904.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	82348.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	23.82	10.82	7.99	8.04	5.32	10.66	5.98	6.22	11.8	14.06	16.58	0.63
Merged-chr2-53200702-2	chr2	53200594	53200794	+	904.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022989, intron 2 of 3)	intron (NM_022989, intron 2 of 3)	8610.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	10.9	7.8	1.14	7.64	18.41	12.54	11.63	10.51	12.78	15.06	16.08	10.02
Merged-chr17-74819789-2	chr17	74819684	74819884	+	904.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	RMER19C|LTR|ERVK	102034.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	2.83	1.76	2.85	6.44	8.18	4.39	7.97	12.06	14.36	14.06	17.08	4.07
Merged-chr4-136895521-1	chr4	136895421	136895621	+	904.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007572)	TTS (NM_007572)	-2607.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.04	5.79	4.56	2.41	23.32	7.21	10.96	5.02	7.47	3.01	5.02	3.76
Merged-chr10-112774463-1	chr10	112774363	112774563	+	904.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040579, intron 5 of 6)	L1MEf|LINE|L1	47537.0	NR_040579	69355.0	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	2.42	7.55	1.14	4.02	12.27	6.9	4.65	12.84	0.39	1.0	5.53	1.88
Merged-chr4-42987592-2	chr4	42987506	42987706	+	904.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009503, intron 7 of 16)	RLTR12B|LTR|ERVK	12901.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	7.27	6.54	5.7	9.25	7.36	15.68	8.97	12.67	18.1	4.02	19.6	10.02
Merged-chr3-96770192-3	chr3	96770081	96770281	+	904.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	CT-rich|Low_complexity|Low_complexity	42570.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	15.75	14.34	24.53	15.69	15.96	6.9	18.93	10.15	25.57	16.07	13.57	17.23
Merged-chr15-25370399-3	chr15	25370307	25370507	+	904.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	43357.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.27	7.04	24.53	18.9	23.73	16.31	28.57	27.39	20.06	13.05	21.61	19.74
Merged-chr6-135937525-3	chr6	135937410	135937610	+	904.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	ID_B1|SINE|B4	236001.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	8.88	7.55	14.26	26.14	16.36	23.52	24.91	42.17	66.09	51.72	72.36	34.77
Merged-chr2-168473102-2	chr2	168473042	168473242	+	904.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117223.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	11.71	10.06	6.85	3.62	11.86	5.02	7.31	6.87	7.87	5.02	3.52	6.89
Merged-chrX-140541857-3	chrX	140541767	140541967	+	904.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 3 of 3)	intron (NM_001077364, intron 3 of 3)	801.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	18.98	3.52	22.82	14.88	12.27	2.2	14.62	11.55	9.44	11.05	23.11	16.29
Merged-chr1-155901514-3	chr1	155901402	155901602	+	904.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039184, exon 24 of 38)	exon (NM_001039184, exon 24 of 38)	71753.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	10.5	6.79	20.54	12.07	11.05	12.54	7.97	20.38	47.99	27.11	41.71	17.86
Merged-chr2-35397745-3	chr2	35397657	35397857	+	904.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080709)	promoter-TSS (NM_001080709)	-583.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	14.94	13.33	23.96	12.87	17.18	10.66	9.97	8.66	11.41	15.06	18.09	7.21
Merged-chr12-85123791-3	chr12	85123675	85123875	+	904.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030225, exon 10 of 15)	exon (NM_030225, exon 10 of 15)	12942.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	14.94	16.85	27.38	26.55	15.96	26.03	15.28	32.38	20.65	10.54	21.61	8.46
Merged-chr6-40476340-3	chr6	40476250	40476450	+	904.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212468, intron 3 of 6)	intron (NM_212468, intron 3 of 6)	4882.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	21.8	16.6	19.97	12.87	10.23	12.86	7.31	28.51	16.33	8.54	16.08	16.29
Merged-chr1-86202819-3	chr1	86202717	86202917	+	904.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 17 of 20)	intron (NM_027456, intron 17 of 20)	48037.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	18.98	6.79	18.25	11.66	29.86	23.52	20.59	18.08	10.03	11.05	11.56	6.89
Merged-chrX-12015221-3	chrX	12015117	12015317	+	904.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65336.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	10.09	17.36	23.96	10.86	8.18	31.98	16.28	17.36	28.91	21.09	30.65	15.04
Merged-chr6-48504366-3	chr6	48504252	48504452	+	904.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015597)	promoter-TSS (NR_015597)	13.0	NR_027808	58894.0	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	8.88	11.32	11.98	19.71	16.36	17.87	17.61	13.01	33.63	29.12	45.73	24.75
Merged-chr15-36518007-3	chr15	36517887	36518087	+	904.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025712, intron 11 of 13)	B3|SINE|B2	-21196.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	14.13	13.58	10.27	14.48	6.95	17.25	8.3	13.63	28.91	9.54	20.1	13.78
Merged-chr6-7845818-3	chr6	7845734	7845934	+	904.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	610.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	4.04	5.53	22.25	17.7	13.91	9.09	10.3	14.61	16.52	14.06	14.07	8.77
Merged-chr15-7129489-4	chr15	7129411	7129611	+	904.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-61.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	12.92	6.54	6.85	5.23	20.05	28.22	5.98	20.55	34.03	34.65	48.74	16.6
Merged-chr5-122145550-2	chr5	122145452	122145652	+	904.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7490.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	4.44	7.29	7.42	2.82	7.36	14.74	5.98	7.4	17.7	25.11	15.07	17.86
Merged-chr3-109425702-2	chr3	109425623	109425823	+	904.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	85040.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	25.44	13.33	21.11	28.56	0.0	0.0	1.99	0.64	16.13	10.54	23.11	7.21
Merged-chr2-59211889-3	chr2	59211792	59211992	+	904.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	L3|LINE|CR1	51042.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	13.73	7.55	13.69	17.29	16.77	11.6	10.96	29.86	13.37	13.56	13.57	9.08
Merged-chr4-3780531-3	chr4	3780436	3780636	+	904.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	B3A|SINE|B2	55119.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	13.33	12.58	11.41	17.7	11.86	27.28	11.29	10.35	20.65	26.61	29.14	6.89
Merged-chr15-59524213-3	chr15	59524116	59524316	+	904.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-124438.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	16.56	16.85	13.69	19.71	15.96	7.84	10.3	26.27	25.96	12.55	12.06	10.34
Merged-chr8-84567681-3	chr8	84567584	84567784	+	904.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007578, exon 21 of 47)	exon (NM_007578, exon 21 of 47)	95168.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	41.19	34.46	33.09	53.89	62.18	55.5	68.1	79.37	11.01	8.03	15.58	8.46
Merged-chr5-21034646-3	chr5	21034566	21034766	+	904.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356590, exon 1 of 19)	5' UTR (NM_001356590, exon 1 of 19)	581.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	9.29	11.07	14.83	25.34	17.59	13.17	12.62	17.16	12.98	21.09	25.12	13.78
Merged-chr8-104116680-3	chr8	104116570	104116770	+	904.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	ORR1F|LTR|ERVL-MaLR	-10797.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	4.44	6.04	13.69	16.09	9.0	20.38	18.6	23.8	21.83	22.09	30.15	13.47
Merged-chr10-117883733-3	chr10	117883634	117883834	+	904.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-37760.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	16.15	10.82	7.99	7.64	18.41	13.8	6.98	9.42	12.59	8.03	10.05	15.04
Merged-chr12-8864657-3	chr12	8864559	8864759	+	904.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56648.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	14.94	11.32	9.7	1.61	12.68	21.95	16.61	9.45	15.74	18.58	11.56	5.64
Merged-chrX-77810903-4	chrX	77810772	77810972	+	904.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14912.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	10.9	12.58	3.99	11.66	12.27	9.09	14.62	11.66	9.64	12.55	17.08	7.21
Merged-chr11-105424507-3	chr11	105424411	105424611	+	904.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039242, intron 4 of 5)	intron (NM_001039242, intron 4 of 5)	32224.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	13.33	12.58	9.7	4.83	23.73	17.56	5.31	8.97	23.6	33.64	23.11	6.58
Merged-chr8-126571279-3	chr8	126571220	126571420	+	904.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22116.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	11.31	11.57	10.84	14.88	15.14	20.7	14.95	22.49	21.83	17.57	12.06	10.34
Merged-chr9-61243571-3	chr9	61243476	61243676	+	904.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1ME|LINE|L1	50233.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	23.02	26.91	17.11	6.44	22.5	51.74	10.3	9.34	28.52	36.15	9.04	6.89
Merged-chr3-105894175-1	chr3	105894075	105894275	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10246.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.85	3.52	5.7	11.26	7.36	4.08	11.63	14.55	7.08	9.54	7.03	9.71
Merged-chr11-3331937-1	chr11	3331837	3332037	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178149, exon 2 of 6)	exon (NM_178149, exon 2 of 6)	1206.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	11.31	15.09	6.28	2.41	6.95	13.17	16.61	13.54	11.8	11.55	6.53	5.95
Merged-chr19-31764395-2	chr19	31764303	31764503	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013833, intron 1 of 17)	CpG	630.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	10.09	12.07	2.28	11.66	22.91	16.93	7.64	16.6	10.62	13.56	8.54	8.77
Merged-chr8-38294491-1	chr8	38294391	38294591	+	904.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145841, intron 1 of 7)	RLTR45|LTR|ERVK	-42289.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.42	0.5	0.0	6.84	1.23	1.25	2.33	1.74	9.64	3.01	14.07	2.19
Merged-chr4-127148056-3	chr4	127147957	127148157	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21147.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	20.59	13.58	15.97	9.65	18.41	21.32	8.3	6.08	15.93	15.06	17.59	9.71
Merged-chr12-16887646-2	chr12	16887538	16887738	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7340.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	11.31	12.32	21.68	10.86	19.23	22.26	20.59	32.38	7.08	6.53	7.54	6.27
Merged-chr9-37098654-1	chr9	37098554	37098754	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	48668.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	5.65	1.26	6.28	2.41	11.86	4.39	7.64	8.24	0.2	0.0	0.0	0.31
Merged-chr6-33514737-1	chr6	33514637	33514837	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	265609.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	2.42	5.28	3.42	5.23	2.05	4.7	4.98	6.17	5.51	7.03	7.03	1.88
Merged-chr7-29214578-1	chr7	29214478	29214678	+	904.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164658)	promoter-TSS (NM_001164658)	-545.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	4.44	3.52	8.56	4.83	5.73	12.86	1.66	2.52	10.62	7.03	11.56	1.88
Merged-chr11-22672027-1	chr11	22671927	22672127	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	159744.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	7.27	2.01	6.85	4.83	1.64	10.66	1.66	8.61	4.13	6.03	6.53	2.19
Merged-chr4-154942101-1	chr4	154942001	154942201	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14024.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.42	6.29	8.56	4.42	8.59	2.82	4.32	7.04	1.18	0.0	0.0	1.57
Merged-chr13-51316475-1	chr13	51316375	51316575	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-92143.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	2.83	3.02	0.0	8.04	12.68	1.88	1.66	7.65	5.51	7.03	9.55	5.33
Merged-chr6-124374774-1	chr6	124374674	124374874	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10288.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	4.44	5.53	6.85	6.03	11.45	7.84	4.98	9.95	6.1	9.54	3.52	4.07
Merged-chr12-34433588-1	chr12	34433488	34433688	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 5 of 27)	intron (NM_001271386, intron 5 of 27)	95301.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.09	3.27	1.14	0.0	10.23	4.08	2.99	8.02	9.44	5.52	9.04	5.01
Merged-chr17-43327472-2	chr17	43327380	43327580	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32951.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	1.62	3.27	5.7	5.63	9.82	7.84	2.99	8.5	19.87	8.54	8.04	10.65
Merged-chr12-32191159-2	chr12	32191059	32191259	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020272, intron 10 of 10)	intron (NM_020272, intron 10 of 10)	17179.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.04	5.28	12.55	4.83	9.41	6.27	8.97	8.5	25.96	29.62	29.14	17.23
Merged-chr15-66818354-3	chr15	66818212	66818412	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	13517.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.63	6.79	2.28	6.84	3.27	3.14	6.98	5.41	1.77	5.52	5.02	4.7
Merged-chr9-46098949-3	chr9	46098850	46099050	+	903.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86130.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	15.75	11.07	17.11	16.49	15.96	8.78	8.3	13.54	15.93	5.02	14.07	10.02
Merged-chr18-82717526-3	chr18	82717419	82717619	+	903.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2762.0	NR_039572	100628586.0		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	12.52	14.84	11.98	14.08	16.77	17.87	10.63	14.61	22.23	19.58	25.63	13.47
Merged-chr2-164835031-3	chr2	164834924	164835124	+	903.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038492, intron 5 of 14)	intron (NM_001038492, intron 5 of 14)	1251.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	12.92	7.29	22.82	13.27	15.96	14.11	10.3	21.64	25.18	21.09	19.6	12.53
Merged-chr1-92331702-2	chr1	92331592	92331792	+	903.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	132850.0	NR_105865	102465542.0		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	16.15	11.82	17.11	22.93	5.73	8.47	12.95	10.65	6.49	3.51	9.04	10.02
Merged-chr10-77607482-4	chr10	77607305	77607505	+	903.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301671, intron 1 of 3)	B1_Mur4|SINE|Alu	807.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	5.65	4.78	14.83	8.45	10.64	9.72	8.64	7.21	13.18	7.03	10.55	9.08
Merged-chr2-164878701-3	chr2	164878618	164878818	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	-650.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	10.09	9.31	7.42	16.89	21.68	10.66	10.63	13.85	21.44	17.07	16.58	12.84
Merged-chr1-84284574-3	chr1	84284481	84284681	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	64.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	23.82	14.34	10.27	18.1	17.59	12.23	17.61	18.67	17.11	19.58	26.13	8.77
Merged-chr7-127387218-3	chr7	127387120	127387320	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030226)	promoter-TSS (NM_030226)	-54.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	8.48	11.07	10.27	9.25	21.68	30.73	10.63	19.63	19.87	31.13	31.15	14.41
Merged-chr6-113690611-3	chr6	113690517	113690717	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 10 of 11)	RLTR35B_MM|LTR|ERVL	-6433.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.86	9.06	23.96	16.09	21.27	7.53	10.3	28.15	20.06	21.59	14.57	14.1
Merged-chr1-84883133-3	chr1	84883009	84883209	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025386, intron 2 of 3)	intron (NM_025386, intron 2 of 3)	43268.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	8.48	13.58	17.68	5.63	10.64	14.42	11.96	21.22	22.42	9.04	34.17	18.8
Merged-chr2-25587970-3	chr2	25587860	25588060	+	903.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024616, intron 8 of 14)	intron (NM_001024616, intron 8 of 14)	-7861.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	14.94	12.58	17.11	8.04	24.14	19.76	9.97	34.49	19.28	16.57	16.08	15.66
Merged-chrX-167316008-3	chrX	167315898	167316098	+	903.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	L2b|LINE|L2	14573.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	11.71	12.58	23.39	24.53	17.18	16.93	12.62	31.35	26.16	9.54	20.6	8.14
Merged-chr15-25414671-5	chr15	25414525	25414725	+	903.8583369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027395)	promoter-TSS (NM_027395)	433.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	6.06	8.8	15.97	10.86	9.82	12.54	9.63	8.86	15.14	14.06	19.6	13.16
Merged-chr4-5645224-2	chr4	5645131	5645331	+	903.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	1141.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	7.27	4.53	14.83	7.24	13.5	6.27	13.62	25.07	7.28	14.56	17.08	9.71
Merged-chr9-72987849-2	chr9	72987753	72987953	+	903.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	2349.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	10.5	13.33	11.41	22.93	18.82	8.78	5.31	13.63	15.74	7.03	15.58	4.7
Merged-chr10-44459477-3	chr10	44459451	44459651	+	903.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	-803.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	15.75	9.81	19.97	10.05	15.96	6.59	17.61	24.31	9.24	9.04	10.55	11.9
Merged-chr15-97590883-3	chr15	97590793	97590993	+	903.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114929.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	15.75	11.82	14.83	16.49	17.18	9.72	21.92	20.72	15.14	14.06	17.59	10.02
Merged-chr10-13987543-3	chr10	13987424	13987624	+	903.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21145.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.48	10.56	20.54	20.11	13.09	21.01	14.95	25.46	39.14	13.56	32.16	24.43
Merged-chr9-37430768-3	chr9	37430658	37430858	+	903.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164767, intron 1 of 27)	intron (NM_001164767, intron 1 of 27)	2417.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	9.29	13.08	10.84	11.66	13.91	19.76	3.65	17.66	20.85	24.1	33.67	18.17
Merged-chr12-85973735-3	chr12	85973621	85973821	+	903.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	105320.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	9.69	7.04	21.68	31.77	42.55	24.15	52.82	83.13	25.96	17.57	69.85	31.33
Merged-chr6-114282792-3	chr6	114282686	114282886	+	903.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178703, exon 1 of 16)	5' UTR (NM_178703, exon 1 of 16)	151.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	28.27	17.36	11.98	10.86	11.45	15.99	6.31	11.58	15.74	13.56	16.08	6.58
Merged-chr5-92318342-3	chr5	92318253	92318453	+	903.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8329.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	10.09	6.29	10.27	6.03	16.36	27.91	16.94	11.89	30.68	17.57	30.15	12.53
Merged-chr12-103336983-4	chr12	103336978	103337178	+	903.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18923.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	5.65	7.55	13.12	13.27	2.05	2.2	6.64	6.2	13.37	5.52	10.05	7.83
Merged-chr2-72323232-3	chr2	72323113	72323313	+	903.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	37512.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	11.71	12.58	17.11	14.08	18.0	14.42	29.9	21.5	10.82	4.52	19.6	10.34
Merged-chr15-100447143-1	chr15	100447043	100447243	+	903.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21868.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.0	0.5	6.85	0.8	10.64	15.68	9.97	9.73	1.97	9.54	7.03	4.07
Merged-chr18-36379533-1	chr18	36379433	36379633	+	903.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081365, intron 2 of 2)	MIRb|SINE|MIR	30909.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	4.85	3.02	7.42	8.85	13.91	4.7	6.31	11.97	1.18	5.02	0.5	4.39
Merged-chr2-38927314-3	chr2	38927200	38927400	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-839.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	14.54	10.31	12.55	9.25	19.23	15.99	13.95	7.54	18.88	17.57	28.14	15.35
Merged-chr14-65064813-3	chr14	65064705	65064905	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360385, intron 3 of 5)	RMER10B|LTR|ERVL	33301.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	8.08	11.57	31.95	18.5	13.5	9.72	19.27	21.73	26.55	23.6	34.17	20.68
Merged-chr5-59854988-3	chr5	59854899	59855099	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131003.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	9.29	6.54	15.97	19.31	25.77	16.93	13.62	34.65	33.63	28.62	27.64	18.48
Merged-chr1-135630026-3	chr1	135629899	135630099	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32223.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	65.82	32.2	107.25	117.04	15.96	12.86	12.29	28.01	8.06	11.05	18.09	12.53
Merged-chr4-59368324-3	chr4	59368220	59368420	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	70313.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	18.57	14.59	13.69	16.89	18.0	15.99	19.6	23.61	14.55	16.57	10.05	9.71
Merged-chr3-101802902-1	chr3	101802802	101803002	+	903.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33321.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	7.67	4.02	5.13	8.04	11.86	13.8	12.62	10.77	9.05	3.51	4.02	3.13
Merged-chr7-78864608-2	chr7	78864517	78864717	+	903.616699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17406.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	6.86	3.77	6.85	5.23	7.77	12.86	13.95	12.7	14.55	18.58	14.57	13.78
Merged-chr13-13553876-3	chr13	13553769	13553969	+	903.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-36540.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	15.34	7.8	18.83	14.88	11.45	10.98	16.61	24.14	28.52	20.59	18.59	19.42
Merged-chr8-11452211-3	chr8	11452119	11452319	+	903.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25710.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	10.9	15.34	16.54	9.65	29.05	27.28	16.28	21.67	24.59	27.62	18.59	18.17
Merged-chr17-17890242-3	chr17	17890146	17890346	+	903.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2422.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	18.98	8.3	11.41	10.05	25.36	20.07	15.28	23.92	24.78	31.63	26.13	15.66
Merged-chr10-84163943-3	chr10	84163820	84164020	+	903.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63223.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.04	8.55	11.98	25.34	21.27	17.25	11.29	19.96	11.41	12.05	18.09	11.28
Merged-chr13-37776936-3	chr13	37776838	37777038	+	903.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49100.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	16.56	10.06	13.69	12.87	22.91	18.81	20.26	18.39	23.01	24.6	15.07	15.98
Merged-chr7-68748501-3	chr7	68748469	68748669	+	903.5238039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042592, intron 1 of 7)	intron (NM_001042592, intron 1 of 7)	669.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	8.88	5.53	6.28	12.87	7.77	8.78	15.94	8.58	13.18	18.58	15.58	14.72
Merged-chr9-108608180-3	chr9	108608157	108608357	+	903.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151664, intron 12 of 15)	B1_Mus1|SINE|Alu	-10645.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	9.29	6.54	19.4	10.05	17.59	12.54	14.28	3.34	12.39	8.54	13.06	10.34
Merged-chr4-40267882-2	chr4	40267771	40267971	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134097, intron 2 of 2)	intron (NM_134097, intron 2 of 2)	-1708.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	1.21	5.53	3.42	3.62	9.41	10.03	8.3	13.07	20.06	7.53	16.58	12.84
Merged-chr5-101994039-2	chr5	101993941	101994141	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75880.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	10.9	9.06	2.85	12.87	0.82	0.94	0.33	1.85	13.77	16.57	22.11	11.59
Merged-chrX-39341174-1	chrX	39341074	39341274	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5092.0	NM_001177380	78631.0	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	0.81	0.0	1.14	0.4	1.64	5.96	14.62	9.64	0.2	2.01	1.0	1.57
Merged-chr5-93195869-3	chr5	93195755	93195955	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	10640.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	11.71	7.04	13.12	20.91	20.46	18.19	13.95	14.66	22.82	15.06	26.13	12.84
Merged-chr5-136953883-3	chr5	136953785	136953985	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	610.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	12.11	9.06	27.38	4.42	13.5	24.46	11.63	19.96	23.8	22.09	26.63	17.54
Merged-chr13-38010271-2	chr13	38010194	38010394	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027724, intron 11 of 12)	intron (NM_027724, intron 11 of 12)	-16086.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.27	6.04	11.41	10.86	6.55	7.21	16.61	10.88	7.47	13.56	27.64	13.47
Merged-chr11-82526292-2	chr11	82526189	82526389	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107064.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	5.25	5.53	5.7	16.89	5.32	5.02	12.29	25.88	15.14	6.03	10.05	13.78
Merged-chr16-55808460-2	chr16	55808339	55808539	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13699.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	10.09	13.83	1.14	0.8	9.0	15.05	1.33	0.03	7.87	17.57	2.51	0.0
Merged-chr16-23290433-2	chr16	23290321	23290521	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252506)	promoter-TSS (NM_001252506)	-49.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.27	11.57	7.99	3.62	20.46	19.13	10.3	6.7	17.11	31.13	22.11	5.01
Merged-chr8-61896955-2	chr8	61896845	61897045	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	5745.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.23	8.8	10.27	9.65	11.05	19.13	13.29	19.57	13.37	5.52	21.61	5.33
Merged-chr1-191095754-3	chr1	191095651	191095851	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-2663.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	11.31	12.07	20.54	8.04	18.0	29.16	9.3	20.86	19.08	13.05	19.6	12.84
Merged-chr5-135015684-2	chr5	135015585	135015785	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2528.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	14.13	8.8	5.7	6.03	5.32	10.98	1.33	6.7	10.62	5.02	6.03	7.21
Merged-chr4-128797027-3	chr4	128796944	128797144	+	903.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 1 of 8)	L1M5|LINE|L1	9068.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	12.52	14.09	7.99	6.44	9.0	19.44	8.64	4.96	16.33	7.53	14.07	11.9
Merged-chr3-121602275-3	chr3	121602186	121602386	+	903.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41199.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	6.06	9.31	5.7	16.09	13.91	20.38	9.3	20.36	22.42	29.62	27.13	25.69
Merged-chr10-50702533-3	chr10	50702423	50702623	+	903.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 16 of 41)	MTD|LTR|ERVL-MaLR	109854.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	9.29	7.55	11.41	18.9	9.0	13.48	14.95	21.22	20.85	22.09	43.21	14.41
Merged-chr8-26023890-3	chr8	26023761	26023961	+	903.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_207659, exon 22 of 22)	3' UTR (NM_207659, exon 22 of 22)	-8260.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	24.63	19.12	21.11	21.72	33.96	22.26	17.61	33.9	7.47	9.54	10.05	10.34
Merged-chr3-41038810-5	chr3	41038667	41038867	+	903.4133300000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44279.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	13.73	7.04	10.84	13.67	14.32	5.33	1.33	5.75	15.93	7.03	17.59	11.9
Merged-chr13-113269985-3	chr13	113269891	113270091	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60332.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	10.5	10.06	7.99	10.05	17.59	18.81	8.97	13.99	16.33	8.54	26.13	16.92
Merged-chr12-25251928-3	chr12	25251819	25252019	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122745.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.23	8.05	20.54	13.67	9.0	12.23	10.96	17.27	8.85	7.03	24.62	15.04
Merged-chr13-43565610-3	chr13	43565508	43565708	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5417.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	27.05	30.69	18.25	11.26	24.55	53.62	12.95	11.16	20.85	21.09	12.56	5.33
Merged-chr2-153609800-3	chr2	153609747	153609947	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22934.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	12.11	12.58	11.41	15.28	20.46	10.35	6.64	14.33	5.9	12.55	11.56	7.83
Merged-chr15-27680767-3	chr15	27680727	27680927	+	903.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	715.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	8.08	6.29	1.71	5.23	13.09	13.17	8.97	13.93	12.0	12.55	15.07	11.9
Merged-chr12-31954421-2	chr12	31954333	31954533	+	903.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4188.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.0	0.75	1.14	2.41	4.91	8.47	8.64	8.97	32.45	22.59	29.65	13.47
Merged-chr1-54795444-3	chr1	54795354	54795554	+	903.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	MTD|LTR|ERVL-MaLR	130933.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	9.69	8.55	16.54	15.28	24.96	13.8	7.31	17.5	18.69	7.53	23.11	4.39
Merged-chr6-87521415-3	chr6	87521289	87521489	+	903.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	ORR1F|LTR|ERVL-MaLR	11870.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.46	9.31	27.38	18.5	15.14	13.48	13.29	16.6	13.18	6.53	21.61	9.71
Merged-chr14-55479009-5	chr14	55478925	55479125	+	903.3599849999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	267.0	NM_030686	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	12.52	7.55	5.13	7.24	7.36	10.03	7.97	6.76	8.65	9.54	3.52	9.71
Merged-chr5-135446152-3	chr5	135446049	135446249	+	903.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 8 of 30)	L1MC3|LINE|L1	-51603.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	14.13	12.07	19.97	15.69	27.0	9.72	20.26	24.62	14.55	10.04	15.07	13.78
Merged-chr5-104053167-2	chr5	104053062	104053262	+	903.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028794, intron 2 of 7)	intron (NM_028794, intron 2 of 7)	5159.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	4.04	6.04	5.7	4.42	9.0	10.98	8.64	9.36	17.9	6.53	25.63	12.84
Merged-chr16-18416394-1	chr16	18416294	18416494	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-2900.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	8.48	2.52	9.13	4.83	13.09	5.02	6.31	20.89	6.49	4.02	9.04	10.02
Merged-chr13-109547896-1	chr13	109547796	109547996	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	Lx6|LINE|L1	223152.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	7.27	7.04	3.99	4.02	9.82	8.15	2.33	12.0	5.51	3.51	8.04	5.95
Merged-chr6-135177461-3	chr6	135177306	135177506	+	903.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-9191.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	10.09	9.56	3.42	0.8	8.18	8.47	3.65	3.9	11.41	15.57	6.03	0.63
Merged-chr2-150878854-1	chr2	150878754	150878954	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	25877.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	10.9	5.03	7.99	7.64	10.23	3.76	9.63	13.68	4.52	9.04	3.52	7.52
Merged-chr2-156295921-1	chr2	156295821	156296021	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-16552.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	10.5	2.52	4.56	13.27	5.73	9.09	10.96	9.62	4.92	8.03	5.02	11.59
Merged-chr19-6679880-3	chr19	6679816	6680016	+	903.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-136846.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	23.02	21.63	26.24	24.94	19.23	20.07	19.6	9.06	15.74	8.54	8.54	6.58
Merged-chr9-73001740-3	chr9	73001635	73001835	+	903.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001114328, exon 5 of 8)	exon (NM_001114328, exon 5 of 8)	16231.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	11.31	9.06	7.42	11.26	13.5	17.25	10.96	15.81	16.33	10.04	13.57	6.58
Merged-chr14-72783375-3	chr14	72783264	72783464	+	903.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73361.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	9.69	16.85	10.84	22.52	30.27	31.04	36.54	28.09	27.73	24.1	49.75	26.0
Merged-chr19-37523908-2	chr19	37523818	37524018	+	903.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26500.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	11.71	14.84	6.85	18.5	11.45	11.92	12.29	20.66	12.59	4.52	7.03	3.76
Merged-chr3-95694053-3	chr3	95693962	95694162	+	903.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6145.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	12.92	3.77	13.12	6.44	22.5	20.38	10.96	15.59	10.42	15.57	22.11	11.59
Merged-chr2-28793143-1	chr2	28793043	28793243	+	903.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033874, intron 11 of 12)	RLTR34C_MM|LTR|ERVK	47217.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	5.65	7.04	3.99	10.05	18.0	12.86	6.31	7.54	6.1	6.53	4.02	9.08
Merged-chr3-89389215-3	chr3	89389116	89389316	+	903.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1545.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	13.33	18.11	5.13	4.42	13.91	15.37	8.97	11.21	17.9	17.07	9.04	6.58
Merged-chr15-77626680-3	chr15	77626626	77626826	+	903.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16560.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	11.31	7.29	10.27	9.65	12.68	28.22	5.98	11.41	23.01	14.06	16.08	12.22
Merged-chr7-3411359-1	chr7	3411259	3411459	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133190, intron 2 of 3)	intron (NM_133190, intron 2 of 3)	-3707.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	12.11	23.9	23.96	12.47	2.05	2.2	3.99	0.98	4.92	0.5	3.01	4.07
Merged-chr2-148073932-1	chr2	148073832	148074032	+	903.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26963.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	2.01	5.7	3.62	4.5	2.51	2.66	2.97	19.67	14.06	43.21	31.33
Merged-chr15-89170310-3	chr15	89170202	89170402	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159521, intron 3 of 37)	intron (NM_001159521, intron 3 of 37)	3649.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	26.65	10.82	12.55	13.67	11.05	19.44	10.3	15.93	25.57	11.05	21.61	16.6
Merged-chr9-114785556-3	chr9	114785471	114785671	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-3578.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	21.8	12.32	22.25	12.87	26.59	21.64	15.94	21.79	25.18	10.54	33.67	10.96
Merged-chr10-82795503-3	chr10	82795382	82795582	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16641.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	25.04	9.31	18.25	31.77	22.5	15.99	35.21	27.59	12.19	11.55	23.62	13.78
Merged-chr19-37047993-2	chr19	37047911	37048111	+	903.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	121932.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	11.31	4.53	5.7	7.24	4.5	7.84	4.98	8.66	8.65	22.59	19.6	16.6
Merged-chr4-129987928-3	chr4	129987817	129988017	+	903.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199696, intron 1 of 28)	CpG	2839.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	16.56	9.81	7.99	9.25	11.86	12.54	10.3	7.74	13.18	12.55	16.58	4.7
Merged-chr12-85533805-3	chr12	85533704	85533904	+	903.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	59914.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	14.94	13.08	7.42	8.85	19.64	28.22	10.63	12.36	18.49	13.56	21.61	14.72
Merged-chr10-67736787-3	chr10	67736709	67736909	+	903.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-164850.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.08	12.83	6.28	16.89	15.14	18.81	9.97	16.12	25.18	45.69	47.23	22.24
Merged-chr13-90089109-3	chr13	90088990	90089190	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	518.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	7.27	13.08	10.27	13.27	18.0	8.47	12.62	13.01	10.62	15.06	27.64	13.47
Merged-chr6-129498029-3	chr6	129497933	129498133	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	9132.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	10.5	4.28	14.83	14.88	13.09	17.87	13.29	20.1	14.36	8.03	21.61	1.88
Merged-chr6-50974026-3	chr6	50973932	50974132	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	197917.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	14.13	5.53	14.26	10.46	14.73	22.58	19.6	25.71	38.35	26.61	60.3	30.07
Merged-chr13-58999291-3	chr13	58999186	58999386	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	191589.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	12.11	8.8	13.69	11.26	6.55	9.41	5.98	13.04	18.49	14.56	11.05	4.07
Merged-chr10-121454272-2	chr10	121454180	121454380	+	903.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	21970.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	13.33	24.4	15.4	18.9	10.64	20.7	6.31	20.3	7.28	5.52	8.04	0.94
Merged-chr15-66801726-3	chr15	66801628	66801828	+	903.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	30101.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	9.29	11.57	33.66	37.81	23.73	12.86	19.6	43.15	16.52	17.07	18.59	9.08
Merged-chr19-26666547-3	chr19	26666456	26666656	+	903.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 10 of 32)	intron (NM_011416, intron 10 of 32)	61396.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	18.98	7.04	15.97	17.29	22.09	10.98	18.6	24.76	16.72	13.05	22.61	15.04
Merged-chr8-68196206-3	chr8	68196112	68196312	+	903.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80316.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	27.05	20.37	18.25	28.15	15.14	16.31	13.62	25.01	13.57	11.55	13.06	14.1
Merged-chr5-64290163-3	chr5	64290076	64290276	+	903.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59819.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.9	7.8	7.99	12.87	25.36	12.86	13.95	29.24	22.62	3.51	34.17	4.39
Merged-chr16-33894679-3	chr16	33894589	33894789	+	903.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	65024.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	13.33	6.54	15.97	26.55	15.96	15.68	11.29	14.02	11.21	15.06	18.59	11.59
Merged-chr14-122986621-3	chr14	122986593	122986793	+	903.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3410.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	4.44	7.8	11.41	16.49	2.45	2.82	10.63	7.6	11.8	4.02	10.55	5.01
Merged-chr13-97295540-3	chr13	97295402	97295602	+	903.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54397.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	37.55	24.9	48.49	10.46	30.27	35.43	15.94	12.81	30.49	24.1	13.57	12.84
Merged-chr16-43979784-3	chr16	43979676	43979876	+	903.035706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-726.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	12.11	8.3	13.69	8.04	17.59	12.23	12.62	15.22	9.44	14.06	19.6	6.58
Merged-chr3-87360578-2	chr3	87360446	87360646	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2665.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	1.62	3.02	7.42	10.46	8.18	10.03	7.31	15.06	33.04	15.06	36.18	41.66
Merged-chr17-86787318-1	chr17	86787218	86787418	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	33454.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.81	1.76	0.57	4.02	0.82	10.66	10.3	9.76	3.93	0.0	1.0	1.25
Merged-chrX-53005119-1	chrX	53005019	53005219	+	903.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013556, intron 3 of 8)	B2_Mm2|SINE|B2	17041.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	5.65	3.52	1.14	3.62	5.73	7.84	1.66	0.87	13.37	5.02	11.05	1.57
Merged-chr1-162649409-1	chr1	162649309	162649509	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010865, exon 3 of 3)	3' UTR (NM_010865, exon 3 of 3)	8810.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	0.0	0.5	1.14	0.8	11.86	7.21	8.64	21.31	0.59	0.5	2.51	0.63
Merged-chr6-148354640-2	chr6	148354540	148354740	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003634)	promoter-TSS (NR_003634)	-16.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.0	4.53	1.14	0.0	3.27	6.59	1.0	6.59	14.55	7.53	7.03	10.96
Merged-chr4-141500781-2	chr4	141500665	141500865	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	37832.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.02	3.02	2.28	0.8	2.45	8.78	1.33	5.66	26.16	22.09	26.63	20.99
Merged-chr4-35980800-1	chr4	35980700	35980900	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-135596.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	2.77	0.0	1.61	9.41	3.14	11.63	14.72	5.51	3.01	3.52	3.76
Merged-chr5-67437681-2	chr5	67437587	67437787	+	903.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9888.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	14.54	14.09	10.84	12.07	17.18	18.5	13.29	35.64	3.93	2.51	6.03	2.82
Merged-chr8-35633537-1	chr8	35633437	35633637	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44517.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	6.06	1.76	1.14	7.64	4.5	8.78	2.66	8.13	7.08	10.04	15.58	5.64
Merged-chr9-55326769-3	chr9	55326674	55326874	+	903.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357568)	promoter-TSS (NM_001357568)	-139.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	21.0	16.85	6.85	8.85	13.09	23.83	15.28	16.04	17.7	20.08	16.08	8.14
Merged-chr11-54693928-1	chr11	54693828	54694028	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252496, intron 28 of 28)	intron (NM_001252496, intron 28 of 28)	93775.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	1.62	3.02	5.7	6.44	12.27	8.47	3.32	11.97	6.88	4.02	7.54	5.01
Merged-chr7-122693915-1	chr7	122693815	122694015	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	22171.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	2.02	1.01	6.85	10.05	3.68	1.88	6.64	7.51	6.1	4.52	10.05	3.13
Merged-chr14-26669000-3	chr14	26668873	26669073	+	903.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106132)	TTS (NR_106132)	635.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	10.5	9.31	2.28	4.42	5.32	8.47	5.65	6.64	7.08	7.53	5.53	12.22
Merged-chr13-6241074-1	chr13	6240974	6241174	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-307083.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	1.21	2.01	3.99	0.8	2.86	2.51	6.31	6.56	1.77	1.51	1.51	0.94
Merged-chr7-38108487-1	chr7	38108387	38108587	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-997.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.42	4.53	13.69	2.01	10.64	5.96	3.65	6.81	8.85	7.03	11.56	5.64
Merged-chr7-7374710-1	chr7	7374610	7374810	+	903.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24917.0	NM_001105062	100042591.0	Mm.469891	NM_001105062	ENSMUSG00000096373	Vmn2r31	-	vomeronasal 2, receptor 31	protein-coding	0.0	1.01	0.0	2.41	3.68	2.51	1.0	1.18	12.0	21.59	15.07	5.33
Merged-chrUn_JH584304-65950-1	chrUn_JH584304	65850	66050	+	903.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6261.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	16.33	18.08	19.09	33.83
Merged-chr16-73956652-1	chr16	73956552	73956752	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001358492, exon 17 of 27)	exon (NM_001358492, exon 17 of 27)	385415.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.81	0.0	2.85	1.61	10.64	4.08	2.66	8.69	9.64	2.01	2.51	5.95
Merged-chr10-42153031-1	chr10	42152931	42153131	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123711.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	10.5	3.52	7.99	7.64	5.32	9.09	5.98	8.97	7.28	5.02	10.55	3.13
Merged-chr12-21264377-2	chr12	21264284	21264484	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004364, intron 23 of 26)	intron (NM_001004364, intron 23 of 26)	21900.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	2.83	1.76	13.69	2.01	2.45	2.82	3.99	8.61	12.19	1.51	8.04	10.65
Merged-chr11-115164532-3	chr11	115164430	115164630	+	902.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1189.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	12.92	5.79	18.25	17.29	13.91	13.17	11.96	14.13	25.37	10.54	30.65	13.16
Merged-chr4-80310832-3	chr4	80310739	80310939	+	902.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-523374.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	8.88	8.8	12.55	24.13	25.36	10.03	21.59	33.11	23.8	16.57	32.66	13.16
Merged-chr10-86929165-3	chr10	86929075	86929275	+	902.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 25 of 68)	intron (NM_138673, intron 25 of 68)	78767.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	14.54	19.12	14.26	14.08	17.18	9.41	10.96	46.43	9.24	14.56	30.15	5.01
Merged-chr1-60940784-3	chr1	60940685	60940885	+	902.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31760.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	16.15	11.57	8.56	12.07	19.64	19.13	5.98	11.13	15.34	22.09	16.58	8.77
Merged-chr17-84121515-3	chr17	84121420	84121620	+	902.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42860.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	10.9	19.37	7.99	15.28	11.45	15.99	14.28	14.1	4.52	16.07	11.56	23.18
Merged-chr11-114850969-3	chr11	114850825	114851025	+	902.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110337)	promoter-TSS (NM_001110337)	-607.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	10.9	9.56	13.69	19.71	17.59	9.72	12.62	7.4	10.23	9.54	10.05	7.52
Merged-chr16-5049210-2	chr16	5049152	5049352	+	902.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	658.0	NM_001359747	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	12.92	10.31	13.12	6.03	15.96	19.13	13.95	19.21	18.49	13.05	15.07	9.4
Merged-chr4-123342936-3	chr4	123342812	123343012	+	902.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001256019, exon 1 of 7)	5' UTR (NM_001256019, exon 1 of 7)	340.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	9.29	11.57	11.41	10.46	9.41	15.99	6.31	10.93	15.14	12.55	22.11	8.14
Merged-chr19-5622116-2	chr19	5622026	5622226	+	902.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-12032.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	7.67	6.54	13.12	5.63	15.14	19.44	15.94	12.93	12.98	13.05	26.13	8.46
Merged-chr7-96946772-2	chr7	96946664	96946864	+	902.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-4763.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	9.69	6.04	27.95	16.89	18.0	21.32	11.29	9.67	7.47	5.52	4.02	2.51
Merged-chr6-136964781-3	chr6	136964626	136964826	+	902.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10203.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	6.46	1.76	8.56	2.01	5.32	5.96	2.33	7.43	18.69	8.54	10.05	4.39
Merged-chr3-127792361-3	chr3	127792256	127792456	+	902.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	1699.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	13.33	8.05	17.68	12.07	16.36	10.03	6.98	12.25	16.92	10.54	8.04	5.64
Merged-chr4-8803276-3	chr4	8803168	8803368	+	902.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51944.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	11.31	15.34	22.25	10.86	26.59	19.44	19.6	33.31	24.39	18.58	44.72	20.99
Merged-chr5-16553927-1	chr5	16553827	16554027	+	902.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289461)	promoter-TSS (NM_001289461)	26.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.23	7.8	5.13	7.24	11.45	8.78	12.62	9.84	4.33	10.54	12.56	5.33
Merged-chr10-86074322-2	chr10	86074221	86074421	+	902.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 8 of 13)	intron (NM_013722, intron 8 of 13)	-21533.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	14.13	9.06	30.23	10.05	4.09	5.96	4.98	6.56	23.01	5.52	21.61	8.14
Merged-chr3-96239133-3	chr3	96239008	96239208	+	902.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	19.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	34.73	34.71	47.92	32.18	40.5	63.34	21.26	15.06	23.6	29.12	27.64	7.21
Merged-chr8-18619256-2	chr8	18619122	18619322	+	902.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173189, intron 3 of 13)	B3|SINE|B2	24091.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	3.23	3.52	3.42	5.63	28.23	7.84	9.97	19.65	6.29	14.06	16.08	12.84
Merged-chr8-36995480-3	chr8	36995402	36995602	+	902.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001039220)	TTS (NM_001039220)	1927.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	5.65	3.02	19.4	15.28	4.5	7.53	13.62	19.04	9.83	5.02	28.14	10.34
Merged-chr17-64747687-3	chr17	64747590	64747790	+	902.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-19421.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	17.36	7.55	19.97	4.02	46.64	53.62	41.19	33.28	26.16	28.62	44.72	14.1
Merged-chr5-113840621-1	chr5	113840521	113840721	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-10120.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	6.46	3.77	7.99	4.83	8.18	14.11	11.29	19.88	9.64	13.05	11.56	6.27
Merged-chr13-23582833-4	chr13	23582745	23582945	+	902.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178194)	TTS (NM_178194)	1243.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	10.5	10.31	11.98	26.14	6.14	16.93	14.62	3.59	8.65	12.05	15.58	24.12
Merged-chr10-121796226-1	chr10	121796126	121796326	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081037, intron 18 of 21)	intron (NM_001081037, intron 18 of 21)	56296.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	5.65	4.53	5.7	4.02	6.95	13.48	7.97	15.9	1.18	3.51	2.51	4.7
Merged-chr3-115694319-2	chr3	115694226	115694426	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20729.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.42	2.77	9.13	8.45	31.5	19.44	19.27	26.94	15.34	15.57	7.03	7.83
Merged-chr10-82818260-2	chr10	82818171	82818371	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	6148.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	6.46	5.28	3.42	10.86	7.36	8.15	19.93	26.55	20.85	6.03	31.15	12.22
Merged-chr16-23492984-3	chr16	23492874	23493074	+	902.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359083, intron 4 of 10)	MIR3|SINE|MIR	27841.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	6.06	17.36	30.8	20.11	15.96	9.09	8.3	15.34	17.51	17.07	15.58	7.52
Merged-chr2-33138700-3	chr2	33138593	33138793	+	902.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-7257.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	12.92	6.29	21.68	10.86	13.91	15.05	18.27	17.13	12.78	8.54	17.59	12.22
Merged-chr10-117277969-3	chr10	117277853	117278053	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_017372, exon 4 of 4)	3' UTR (NM_017372, exon 4 of 4)	4319.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	10.5	10.31	22.25	16.89	16.36	20.38	24.91	41.55	17.31	8.03	16.08	7.52
Merged-chr13-37489421-1	chr13	37489321	37489521	+	902.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144076.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.4	1.51	2.28	0.4	1.23	1.88	0.66	0.7	44.06	11.55	45.73	14.41
Merged-chr4-19901295-3	chr4	19901189	19901389	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	21277.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	17.36	13.83	10.27	12.87	29.05	18.81	9.3	16.85	23.41	26.61	28.64	18.48
Merged-chr1-84200094-3	chr1	84199995	84200195	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	MLT1H1|LTR|ERVL-MaLR	18866.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	14.13	11.32	19.97	10.46	13.09	11.6	10.3	13.21	23.01	5.02	14.57	12.22
Merged-chr10-62411178-1	chr10	62411078	62411278	+	902.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145419, intron 4 of 17)	intron (NM_145419, intron 4 of 17)	11279.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	4.04	8.55	7.42	3.22	9.41	14.74	3.99	8.58	9.44	5.02	20.1	3.76
Merged-chr8-72323283-3	chr8	72323168	72323368	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4206.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	14.54	7.04	6.85	17.7	12.68	7.84	6.98	11.61	17.51	16.07	22.11	12.22
Merged-chr11-53466788-2	chr11	53466679	53466879	+	902.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290789, exon 7 of 7)	exon (NM_001290789, exon 7 of 7)	9574.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	8.08	4.28	6.85	4.42	6.14	21.01	6.64	9.79	13.77	8.54	20.6	8.77
Merged-chr9-109000921-3	chr9	109000827	109001027	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	9025.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	23.82	15.59	11.41	5.23	20.05	23.83	8.64	11.72	29.11	31.13	20.1	17.86
Merged-chr10-80747596-3	chr10	80747507	80747707	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5332.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	18.17	6.54	18.83	12.87	20.46	20.38	5.65	8.92	13.37	7.03	17.08	9.08
Merged-chr15-94601531-3	chr15	94601433	94601633	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11709.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	16.56	9.56	5.7	16.89	15.96	11.92	9.97	14.52	14.95	13.05	18.59	8.77
Merged-chr18-55197406-3	chr18	55197315	55197515	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-204824.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	10.5	17.1	10.84	14.88	12.27	19.13	15.61	29.19	12.39	17.57	18.59	15.35
Merged-chr14-70797183-1	chr14	70797083	70797283	+	902.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22802.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.42	3.77	1.71	0.0	1.23	5.64	0.0	0.56	19.28	25.11	15.58	2.82
Merged-chr12-88408410-1	chr12	88408310	88408510	+	902.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361601, intron 3 of 8)	BC1_Mm|scRNA|scRNA	-31087.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.4	1.01	0.0	0.0	10.23	18.19	10.63	17.22	17.7	5.02	5.53	4.07
Merged-chr3-103830880-3	chr3	103830785	103830985	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D2|LTR|ERVK	-1811.0	NM_001142959	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	18.17	18.61	38.79	6.84	12.68	19.76	7.31	5.13	12.98	8.03	8.04	8.14
Merged-chr17-64748073-2	chr17	64747964	64748164	+	902.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 20 of 21)	Lx7|LINE|L1	-19047.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	11.31	7.8	5.7	21.32	22.91	15.68	33.22	27.5	15.93	21.09	26.13	12.22
Merged-chr1-88278346-3	chr1	88278262	88278462	+	902.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-783.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.23	9.56	2.85	4.42	16.77	14.11	11.29	6.06	7.67	19.08	21.1	6.58
Merged-chr12-79755257-2	chr12	79755153	79755353	+	902.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	169480.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	9.69	10.82	18.25	15.69	14.32	18.19	9.63	13.18	4.92	2.51	11.56	6.27
Merged-chr1-152428482-3	chr1	152428355	152428555	+	902.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	28588.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	14.13	17.1	22.82	6.03	9.0	10.35	10.3	15.76	15.74	15.57	21.1	22.56
Merged-chr13-5988654-3	chr13	5988541	5988741	+	902.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	127152.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	11.71	10.56	15.97	14.88	13.5	5.96	5.98	8.86	15.34	12.55	18.09	5.33
Merged-chr19-17278576-3	chr19	17278497	17278697	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.06	9.81	10.84	1.21	20.05	15.05	10.96	17.24	29.7	23.6	24.12	16.29
Merged-chr9-37489803-3	chr9	37489703	37489903	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146222, exon 1 of 4)	exon (NM_146222, exon 1 of 4)	482.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	11.71	13.08	5.13	11.66	4.91	14.42	12.29	13.96	12.78	18.58	15.07	12.84
Merged-chr15-99421350-3	chr15	99421228	99421428	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001884)	TTS (NM_001001884)	28109.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	15.75	11.82	15.4	6.03	21.27	24.15	8.3	13.57	14.75	20.59	14.07	11.28
Merged-chr9-122923112-3	chr9	122923012	122923212	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009544)	promoter-TSS (NM_009544)	34.0	NM_009544	22646.0	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	9.29	10.82	19.4	12.87	9.82	10.98	13.95	14.52	11.6	18.08	23.62	17.54
Merged-chr5-75044068-2	chr5	75043943	75044143	+	902.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028850, intron 1 of 5)	CpG	598.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	11.71	9.56	18.83	18.9	12.27	16.62	15.94	21.36	18.49	13.05	24.62	20.68
Merged-chr11-62866865-2	chr11	62866772	62866972	+	902.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033669, intron 8 of 12)	MIR|SINE|MIR	-12583.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	2.02	2.26	1.14	0.0	11.45	6.27	9.97	19.15	17.9	16.07	12.56	12.53
Merged-chr13-23488904-3	chr13	23488807	23489007	+	902.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175938)	promoter-TSS (NM_175938)	-50.0	NM_001289614	238555.0	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	21.8	16.35	13.12	11.66	9.0	13.8	6.64	12.93	20.46	8.03	23.11	7.52
Merged-chr4-131920300-3	chr4	131920224	131920424	+	902.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102393)	promoter-TSS (NR_102393)	-295.0	NR_102393	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	12.52	15.34	15.4	11.26	14.73	17.56	23.58	27.22	15.93	10.54	21.1	7.52
Merged-chr5-123586028-3	chr5	123585951	123586151	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359223)	TTS (NM_001359223)	-13036.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	7.27	7.55	15.97	5.63	15.55	10.98	12.62	10.51	14.36	5.52	8.54	10.96
Merged-chr2-84538162-3	chr2	84538069	84538269	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31296.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	23.82	6.54	18.25	24.53	33.96	11.29	9.63	16.68	26.95	16.07	13.06	17.54
Merged-chr12-104836420-3	chr12	104836316	104836516	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040682, intron 1 of 12)	Lx7|LINE|L1	28660.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	14.13	7.55	17.68	18.5	7.77	14.42	13.95	21.2	16.52	4.52	29.65	12.53
Merged-chr19-21946671-3	chr19	21946575	21946775	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168335.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	10.09	10.56	3.42	11.66	15.96	14.11	8.97	15.62	92.25	83.35	56.78	28.82
Merged-chr6-113121002-3	chr6	113120889	113121089	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173005, exon 13 of 21)	exon (NM_173005, exon 13 of 21)	16054.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	6.86	7.04	17.68	12.87	13.91	13.8	13.62	20.41	17.31	8.03	25.12	20.99
Merged-chr8-114473794-3	chr8	114473685	114473885	+	902.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	34133.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	10.9	7.55	14.26	24.53	38.86	32.61	26.91	40.57	21.24	25.11	51.76	22.56
Merged-chr6-122724862-3	chr6	122724764	122724964	+	902.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	17299.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	19.79	13.33	16.54	17.7	13.09	14.42	6.98	16.93	18.69	12.55	22.11	11.59
Merged-chr9-106306924-3	chr9	106306835	106307035	+	902.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 8 of 10)	intron (NM_027354, intron 8 of 10)	25874.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	13.33	7.55	19.97	15.28	16.36	12.86	3.99	13.77	15.54	11.05	22.61	6.27
Merged-chr10-95525123-3	chr10	95525024	95525224	+	902.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	9962.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	15.34	19.62	26.24	10.46	2.45	13.17	4.65	8.72	23.6	20.08	10.05	7.83
Merged-chr19-45675308-1	chr19	45675208	45675408	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15115.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.65	9.56	6.85	4.42	11.86	6.27	3.65	9.95	7.28	8.03	12.06	5.01
Merged-chr9-107747524-3	chr9	107747433	107747633	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	23469.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	19.38	11.57	9.7	9.65	19.23	17.25	10.3	28.29	12.78	7.03	20.1	11.28
Merged-chr11-77185181-1	chr11	77185081	77185281	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	3787.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	5.65	4.78	10.27	3.22	8.59	20.38	11.63	12.64	1.18	5.52	6.53	6.58
Merged-chr3-20132972-1	chr3	20132872	20133072	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	22144.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	2.83	5.03	2.85	12.07	8.18	5.02	11.29	23.92	6.69	2.51	8.04	9.71
Merged-chr19-36899834-2	chr19	36899733	36899933	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	19766.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	2.02	15.59	17.11	6.44	0.0	0.63	2.66	0.03	13.57	0.5	8.54	11.28
Merged-chr11-90558877-1	chr11	90558777	90558977	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79231.0	NM_011505	20913.0	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	2.42	2.01	2.28	6.44	2.86	9.09	6.31	10.68	3.15	3.51	3.52	3.45
Merged-chr10-7142488-3	chr10	7142381	7142581	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	69756.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	14.13	14.09	7.42	11.26	24.14	23.83	28.57	25.65	19.67	17.07	15.58	13.47
Merged-chr10-88584614-3	chr10	88584505	88584705	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175418, intron 2 of 28)	intron (NM_175418, intron 2 of 28)	20547.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	6.46	9.56	23.96	22.93	14.32	6.9	3.32	15.62	15.14	19.58	16.58	15.66
Merged-chr14-93674946-2	chr14	93674854	93675054	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	215715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	8.08	3.27	6.85	3.62	18.41	21.95	17.94	26.61	14.55	5.52	15.07	4.07
Merged-chr5-90909163-3	chr5	90909068	90909268	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5269.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	13.33	9.81	11.41	11.26	12.27	11.29	2.99	12.79	23.01	23.1	24.62	5.01
Merged-chr3-19451189-1	chr3	19451089	19451289	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57406.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.23	1.01	0.0	2.01	5.73	1.25	11.63	10.6	3.15	1.0	6.03	0.94
Merged-chr10-99211144-3	chr10	99211049	99211249	+	902.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52082.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	13.33	16.85	22.82	17.29	6.95	22.58	13.29	15.67	35.99	20.08	14.07	16.92
Merged-chr11-36942135-3	chr11	36942021	36942221	+	902.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	2120.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	11.71	8.8	7.99	17.29	27.82	22.58	10.63	39.06	37.76	28.12	40.7	26.94
Merged-chr4-101328837-3	chr4	101328734	101328934	+	902.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18193.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	6.06	7.29	12.55	19.31	11.45	7.84	9.97	20.47	17.31	13.56	14.07	14.72
Merged-chrX-75084125-3	chrX	75084023	75084223	+	902.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181584, intron 1 of 9)	intron (NM_181584, intron 1 of 9)	782.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	15.75	8.8	17.68	14.08	19.64	15.37	10.3	23.58	14.16	19.58	17.08	15.35
Merged-chrX-142540451-3	chrX	142540340	142540540	+	902.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139907.0	NM_001358725	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	23.82	14.34	27.38	15.28	20.86	19.44	15.94	14.8	24.98	8.54	11.05	13.16
Merged-chr17-28709201-3	chr17	28709098	28709298	+	902.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	16630.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	13.73	10.82	14.26	22.12	18.82	18.5	5.65	12.67	10.62	6.03	14.57	5.95
Merged-chr19-12010528-3	chr19	12010411	12010611	+	902.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26229.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.65	10.56	12.55	8.85	13.91	15.37	7.64	15.62	16.72	25.61	21.1	10.96
Merged-chr6-86599446-3	chr6	86599322	86599522	+	902.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28752.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	14.54	14.84	12.55	6.44	14.73	9.09	11.96	11.44	11.6	19.08	20.1	11.59
Merged-chr15-9132746-2	chr15	9132644	9132844	+	902.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7710.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.25	5.53	6.85	9.25	6.95	11.92	18.6	14.92	11.01	10.04	13.57	12.22
Merged-chr4-140958019-2	chr4	140957929	140958129	+	902.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045911)	promoter-TSS (NR_045911)	-127.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	7.27	2.01	9.13	6.03	15.14	16.31	8.64	6.56	13.57	16.07	17.08	18.8
Merged-chr13-62971053-3	chr13	62970936	62971136	+	902.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 1 of 15)	intron (NM_001289926, intron 1 of 15)	6143.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	16.96	16.6	18.25	21.32	19.23	23.52	30.89	18.79	10.23	10.04	24.12	7.83
Merged-chr8-22124912-2	chr8	22124782	22124982	+	902.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	185.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	8.48	10.06	5.7	12.47	9.0	13.17	25.91	11.64	11.41	6.03	10.05	5.33
Merged-chr19-34519839-2	chr19	34519724	34519924	+	902.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7650.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	3.23	5.03	1.71	8.04	15.55	22.26	5.98	11.55	10.03	16.07	9.04	10.65
Merged-chr13-51843997-3	chr13	51843886	51844086	+	902.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2689.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	24.23	11.57	16.54	11.66	28.64	28.54	18.93	21.36	33.24	14.56	22.61	22.56
Merged-chr2-139919082-2	chr2	139918986	139919186	+	902.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110352, intron 9 of 12)	Lx8|LINE|L1	147719.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	1.21	7.29	4.56	7.24	15.55	19.13	10.63	14.86	22.82	12.55	20.6	7.83
Merged-chr10-11281852-2	chr10	11281758	11281958	+	902.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168297, intron 1 of 2)	CpG	271.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	9.69	10.82	14.26	12.07	18.41	12.23	17.61	13.6	12.39	14.56	12.56	19.42
Merged-chr18-34886159-3	chr18	34886058	34886258	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24951.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	9.29	13.58	16.54	10.46	24.14	18.81	10.96	19.15	24.78	17.57	23.11	16.6
Merged-chr18-32694855-3	chr18	32694758	32694958	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-120525.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	9.29	11.82	18.25	8.04	26.18	17.25	16.94	25.85	24.0	20.59	45.22	16.29
Merged-chr14-122292633-1	chr14	122292533	122292733	+	902.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-58995.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	2.42	3.77	9.13	10.46	10.64	9.41	4.32	12.79	6.1	2.51	11.05	9.71
Merged-chr13-67527244-3	chr13	67527122	67527322	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	-991.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	9.29	10.31	16.54	5.63	10.64	10.98	20.59	17.22	12.78	15.57	29.65	15.66
Merged-chr12-108249663-1	chr12	108249563	108249763	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159910, intron 1 of 5)	intron (NM_001159910, intron 1 of 5)	25754.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	8.08	24.4	15.97	15.28	0.82	1.25	1.0	0.67	4.13	1.51	0.0	1.88
Merged-chr6-94700291-1	chr6	94700191	94700391	+	902.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008377)	promoter-TSS (NM_008377)	-146.0	NM_008377	16206.0	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	3.63	3.27	2.28	5.23	15.14	13.8	8.64	18.08	4.52	5.52	11.05	2.82
Merged-chr14-72938964-3	chr14	72938896	72939096	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-86607.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	10.9	11.32	19.4	18.5	9.0	12.86	13.29	15.9	11.01	9.54	15.58	7.21
Merged-chr11-4237666-1	chr11	4237566	4237766	+	902.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013365, intron 1 of 2)	intron (NM_001013365, intron 1 of 2)	881.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	2.83	1.51	2.28	3.22	11.86	4.08	10.63	8.36	0.2	3.01	3.01	2.19
Merged-chr1-191181435-6	chr1	191181337	191181537	+	902.319458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	1896.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	16.96	10.82	9.13	11.26	3.27	11.6	1.33	9.08	8.46	8.54	11.05	8.14
Merged-chr5-147051059-2	chr5	147050947	147051147	+	902.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	25525.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.27	13.58	21.68	14.08	15.55	14.42	8.3	9.42	8.06	5.52	6.03	8.77
Merged-chr17-12990926-3	chr17	12990820	12991020	+	902.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175394, intron 1 of 5)	B3|SINE|B2	1339.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	11.71	8.55	19.4	2.82	15.55	24.77	17.94	9.76	25.18	12.55	22.11	10.34
Merged-chr11-61774927-3	chr11	61774831	61775031	+	902.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013881)	TTS (NM_013881)	-12843.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	18.98	10.82	10.27	17.7	18.82	15.37	8.97	16.71	18.1	23.6	24.12	12.22
Merged-chr3-84679079-3	chr3	84678981	84679181	+	902.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	12889.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	9.29	9.56	15.4	20.91	16.36	24.46	29.23	50.02	19.08	14.06	21.1	25.06
Merged-chr5-122697463-2	chr5	122697362	122697562	+	902.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10082.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	18.57	15.59	11.41	7.64	18.82	21.01	18.6	15.7	4.33	8.03	3.01	3.13
Merged-chrX-103746425-3	chrX	103746329	103746529	+	902.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009197, intron 1 of 5)	MTD|LTR|ERVL-MaLR	75559.0	NM_009197	20502.0	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	14.13	10.31	14.26	20.11	5.73	7.21	9.3	14.69	20.65	12.55	31.15	17.23
Merged-chrX-18163302-5	chrX	18163229	18163429	+	902.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310444, intron 1 of 28)	CpG	754.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	13.33	11.32	11.41	22.93	5.32	12.23	11.63	8.33	11.6	9.54	8.54	14.41
Merged-chr11-100931751-3	chr11	100931641	100931841	+	902.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	7799.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	14.13	16.6	21.11	9.65	16.36	12.86	8.97	7.71	21.24	25.11	17.08	10.65
Merged-chr10-61204158-3	chr10	61204074	61204274	+	902.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 18 of 21)	intron (NM_001081127, intron 18 of 21)	28912.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	15.34	16.85	14.26	6.44	11.45	15.99	13.95	3.39	28.91	15.06	14.57	11.28
Merged-chr13-45392198-3	chr13	45392108	45392308	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2466.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	8.08	12.58	7.42	13.67	18.82	18.19	12.29	25.29	15.14	10.04	15.07	17.86
Merged-chr9-59734039-3	chr9	59733944	59734144	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001172071)	TTS (NM_001172071)	16605.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	11.31	7.55	15.97	15.69	26.18	37.63	22.92	34.6	33.04	26.61	27.13	19.42
Merged-chr15-78899809-3	chr15	78899715	78899915	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	47.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	9.29	20.12	13.12	16.89	11.86	16.62	8.97	8.64	12.78	10.04	19.6	6.27
Merged-chr11-118220867-3	chr11	118220759	118220959	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-8117.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	12.11	8.8	13.12	2.82	12.68	21.95	6.98	14.72	17.31	13.56	19.09	16.6
Merged-chr12-25301181-3	chr12	25301083	25301283	+	902.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172009.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.11	9.56	9.7	19.31	11.86	16.62	8.64	22.82	23.21	20.59	28.14	13.78
Merged-chr9-83570081-1	chr9	83569981	83570181	+	902.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	21743.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.23	2.01	7.99	4.02	0.82	2.2	0.33	1.71	23.6	12.05	23.11	17.54
Merged-chr4-139330756-3	chr4	139330659	139330859	+	902.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20015.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	48.86	26.41	10.84	43.84	21.27	20.7	8.64	5.16	47.21	38.66	36.18	33.21
Merged-chr2-31259135-2	chr2	31259044	31259244	+	902.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	13221.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	6.46	6.29	0.0	7.24	14.32	17.25	15.28	14.33	10.62	13.05	12.56	14.72
Merged-chr18-34863483-9	chr18	34863328	34863528	+	902.148132	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007913, exon 2 of 2)	exon (NM_007913, exon 2 of 2)	2221.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	65.41	92.56	11.98	8.04	28.64	72.44	7.64	7.43	60.38	118.5	18.09	15.66
Merged-chr5-115347768-3	chr5	115347662	115347862	+	902.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007748, intron 2 of 2)	intron (NM_007748, intron 2 of 2)	1193.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	19.79	10.31	13.12	14.48	8.59	29.79	15.28	13.85	24.98	19.08	20.1	20.05
Merged-chr1-92956833-3	chr1	92956706	92956906	+	902.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-6216.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	14.94	8.55	11.98	13.67	15.55	18.5	10.96	0.93	22.82	16.07	19.6	16.92
Merged-chr2-19629063-3	chr2	19628954	19629154	+	902.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28843.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	6.06	8.8	14.83	3.22	10.64	6.9	2.66	8.69	13.18	16.57	22.61	10.65
Merged-chr11-95825072-3	chr11	95824966	95825166	+	902.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	566.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	26.25	8.05	14.26	4.83	10.23	11.92	4.65	12.34	12.59	10.04	10.05	16.29
Merged-chr5-139382932-3	chr5	139382793	139382993	+	902.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	2254.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	10.09	8.55	35.94	19.71	15.55	12.86	35.54	33.28	12.59	7.03	28.14	14.41
Merged-chr2-129514485-3	chr2	129514327	129514527	+	902.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22175.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.25	16.6	11.41	8.45	15.96	13.17	2.66	9.62	13.18	28.12	14.57	8.14
Merged-chr7-130900450-3	chr7	130900339	130900539	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 4 of 9)	intron (NM_133942, intron 4 of 9)	-7829.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	17.36	7.55	15.4	16.89	19.23	20.38	22.59	21.0	19.67	17.57	12.56	10.96
Merged-chr15-64002117-3	chr15	64002027	64002227	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-4061.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	19.79	9.56	13.69	22.52	16.36	15.99	17.61	27.08	21.44	20.59	33.16	10.34
Merged-chr3-52269040-3	chr3	52268918	52269118	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019739, exon 1 of 3)	exon (NM_019739, exon 1 of 3)	681.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	14.13	12.32	10.27	9.65	15.55	8.78	7.31	13.82	21.44	16.07	26.13	13.47
Merged-chr10-10554416-3	chr10	10554302	10554502	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3805.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	13.33	8.3	9.13	6.44	15.14	10.03	6.98	17.07	12.59	20.08	15.58	5.01
Merged-chr14-26534104-4	chr14	26534074	26534274	+	902.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347494, exon 1 of 20)	5' UTR (NM_001347494, exon 1 of 20)	450.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	9.69	14.34	13.69	11.26	11.45	13.8	16.94	8.58	13.96	13.05	12.06	7.21
Merged-chr1-91235600-3	chr1	91235502	91235702	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-14702.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	12.11	9.31	5.7	5.63	38.05	23.2	29.23	33.59	38.35	23.6	38.69	28.51
Merged-chr2-35174249-1	chr2	35174149	35174349	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 39 of 43)	MTD|LTR|ERVL-MaLR	26871.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	6.06	6.29	5.13	15.69	11.86	12.23	8.64	12.11	6.1	1.51	17.08	5.64
Merged-chr2-118307818-3	chr2	118307712	118307912	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045919, intron 2 of 2)	intron (NR_045919, intron 2 of 2)	2898.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	2.83	10.82	4.56	8.85	13.5	23.83	12.62	21.98	29.11	17.57	35.68	17.86
Merged-chr19-7922561-1	chr19	7922461	7922661	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134256, intron 3 of 10)	L1_Mus2|LINE|L1	43466.0	NM_134256	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	3.63	2.01	3.42	5.63	5.73	3.45	6.64	8.47	6.88	1.51	9.55	5.95
Merged-chr14-93701694-1	chr14	93701594	93701794	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	188975.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.21	1.51	3.42	4.02	6.14	3.45	5.98	6.62	3.34	7.53	3.52	2.51
Merged-chr5-20702115-5	chr5	20702077	20702277	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	179947.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	10.9	11.82	7.99	20.91	6.14	7.53	12.62	16.74	10.03	6.03	11.56	10.96
Merged-chr2-168590323-2	chr2	168590202	168590402	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136073)	promoter-TSS (NM_001136073)	63.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	14.54	9.06	17.11	4.02	16.77	13.48	5.31	9.64	6.1	3.51	4.02	4.7
Merged-chr3-51710752-1	chr3	51710652	51710852	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	49573.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.65	6.54	5.13	6.84	4.09	1.57	7.64	7.18	0.79	6.53	2.01	3.13
Merged-chr10-99169176-3	chr10	99169083	99169283	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61048.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	21.0	8.05	10.27	12.87	11.86	7.21	9.97	18.03	15.74	12.55	18.59	5.95
Merged-chr3-149445403-1	chr3	149445303	149445503	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	170666.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.04	5.79	3.42	2.01	2.45	5.02	8.97	9.79	4.72	1.51	8.54	4.07
Merged-chr7-100254836-1	chr7	100254736	100254936	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027629, intron 4 of 13)	intron (NM_027629, intron 4 of 13)	-9708.0	NR_033563	14777.0	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	4.04	0.75	1.14	2.41	0.41	8.78	2.66	7.35	4.92	4.52	4.52	4.39
Merged-chr17-50876630-2	chr17	50876517	50876717	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	177936.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.04	4.53	10.27	6.84	15.96	17.25	10.96	11.94	10.82	14.56	21.61	7.21
Merged-chr4-105640979-1	chr4	105640879	105641079	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	483632.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	5.28	0.0	2.41	8.18	14.11	11.29	19.32	6.88	5.02	5.02	2.19
Merged-chr6-134135088-3	chr6	134135000	134135200	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	99400.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	11.31	14.59	8.56	12.07	18.0	26.97	8.97	15.17	24.39	22.09	21.61	11.28
Merged-chr14-75010525-1	chr14	75010425	75010625	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-5502.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	8.88	2.01	6.28	5.23	8.59	9.41	11.63	11.44	6.1	6.53	5.53	7.52
Merged-chr18-69280537-1	chr18	69280437	69280637	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63955.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	7.67	2.01	3.42	4.83	4.09	3.76	5.98	7.99	4.33	0.0	7.03	3.13
Merged-chr19-10905475-3	chr19	10905381	10905581	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253844, exon 14 of 14)	3' UTR (NM_001253844, exon 14 of 14)	6836.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	15.75	21.13	13.12	16.49	13.09	7.53	13.29	10.37	12.39	2.51	14.57	10.65
Merged-chr1-135660301-1	chr1	135660201	135660401	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59762.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.81	2.01	0.0	0.0	9.82	10.98	6.31	10.12	3.74	8.54	7.54	6.27
Merged-chr16-62834134-2	chr16	62834036	62834236	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 1 of 9)	L2a|LINE|L2	12904.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	14.54	8.05	2.28	4.83	2.86	8.47	1.66	7.37	12.19	8.03	15.07	4.39
Merged-chr11-43369390-1	chr11	43369290	43369490	+	902.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	5071.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	2.83	6.79	6.28	3.62	4.91	6.27	4.32	2.24	11.6	18.58	19.09	6.58
Merged-chr1-185248866-1	chr1	185248766	185248966	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 12 of 34)	intron (NM_001163754, intron 12 of 34)	5891.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	4.04	1.26	0.0	5.23	1.64	5.02	6.98	7.99	0.39	0.0	0.0	0.0
Merged-chr14-25607863-2	chr14	25607761	25607961	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	CpG	4348.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	15.34	10.06	5.13	7.24	10.23	5.64	6.98	9.59	7.28	3.01	2.51	2.82
Merged-chr3-8595612-3	chr3	8595477	8595677	+	901.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32474.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	28.67	12.83	25.67	24.53	31.91	31.36	16.94	30.67	17.11	8.03	20.6	3.76
Merged-chrX-151508789-3	chrX	151508696	151508896	+	901.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-11876.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	16.15	8.05	22.25	20.91	9.82	11.92	13.62	19.88	12.78	11.55	17.08	9.08
Merged-chr5-134228285-2	chr5	134228195	134228395	+	901.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010876, intron 1 of 10)	intron (NM_010876, intron 1 of 10)	1330.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	8.88	6.04	1.71	1.61	12.27	26.03	9.63	8.5	16.92	16.07	14.07	4.7
Merged-chr7-105751651-3	chr7	105751554	105751754	+	901.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009906, exon 3 of 13)	exon (NM_009906, exon 3 of 13)	581.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	11.71	9.56	3.42	10.86	17.59	15.68	7.64	17.27	17.31	22.59	25.63	7.83
Merged-chr19-48049508-3	chr19	48049401	48049601	+	901.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111789.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	7.27	6.54	17.68	12.47	14.73	13.8	30.23	18.73	8.26	13.05	22.61	16.29
Merged-chr2-170311148-3	chr2	170311039	170311239	+	901.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45222.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	12.92	13.58	23.39	20.11	17.59	15.37	15.28	23.05	12.0	11.55	16.08	13.47
Merged-chr4-150593996-3	chr4	150593904	150594104	+	901.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	58170.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	14.13	11.07	16.54	11.26	22.91	22.58	11.29	30.34	33.63	24.6	28.14	15.66
Merged-chr9-67845972-2	chr9	67845918	67846118	+	901.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	5622.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	7.27	2.77	6.85	8.45	8.59	2.2	5.31	7.88	5.7	3.51	7.03	3.45
Merged-chr17-57283972-2	chr17	57283864	57284064	+	901.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	4864.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.46	5.03	15.97	4.42	1.64	14.42	12.29	18.93	10.62	5.52	19.09	10.02
Merged-chr9-40583738-2	chr9	40583627	40583827	+	901.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52344.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	9.29	5.28	9.7	6.03	12.27	18.5	1.66	8.16	11.6	20.59	16.58	3.76
Merged-chr4-135973819-3	chr4	135973703	135973903	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1209.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	15.34	8.05	11.98	10.86	21.27	29.48	10.96	16.68	27.14	22.09	10.05	10.02
Merged-chr17-34150252-1	chr17	34150152	34150352	+	901.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010388, intron 3 of 5)	intron (NM_010388, intron 3 of 5)	-2939.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.81	2.01	1.14	0.4	17.59	15.05	10.96	9.11	2.36	0.0	1.0	2.51
Merged-chr14-33240599-3	chr14	33240504	33240704	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	23781.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	21.4	13.58	20.54	34.19	22.91	22.26	22.26	36.73	12.39	8.54	13.57	11.9
Merged-chr6-72522532-3	chr6	72522432	72522632	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21859.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.06	9.56	21.68	8.04	9.0	22.58	11.29	16.6	26.16	16.57	43.72	26.31
Merged-chr6-113047591-3	chr6	113047477	113047677	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355266, exon 2 of 10)	exon (NM_001355266, exon 2 of 10)	1275.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	12.52	17.61	14.83	25.34	8.59	18.19	13.29	19.82	19.47	10.04	22.61	16.92
Merged-chr18-38233549-3	chr18	38233436	38233636	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16662.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	17.36	11.82	11.41	15.28	17.18	16.93	7.97	14.38	13.57	13.05	18.59	14.41
Merged-chr16-27376761-3	chr16	27376652	27376852	+	901.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6513.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	7.27	8.55	17.11	11.26	15.14	16.93	4.98	14.92	20.46	10.54	19.6	7.52
Merged-chr19-3986520-3	chr19	3986437	3986637	+	901.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302482)	promoter-TSS (NM_001302482)	-33.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	18.98	10.06	17.11	14.88	11.86	15.37	11.29	11.52	13.18	16.07	22.11	13.47
Merged-chr4-109406577-6	chr4	109406643	109406843	+	901.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153392)	promoter-TSS (NM_153392)	-357.0	NM_153392	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	3.23	2.77	3.42	9.65	11.86	11.92	9.97	14.3	5.9	11.05	12.06	10.65
Merged-chr4-3775094-3	chr4	3775013	3775213	+	901.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	60149.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	9.69	3.02	2.28	8.45	18.82	11.6	12.62	12.84	18.88	29.62	19.6	14.1
Merged-chr8-71406848-3	chr8	71406752	71406952	+	901.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310502, intron 3 of 8)	intron (NM_001310502, intron 3 of 8)	840.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	14.94	10.06	14.26	10.86	18.41	8.15	12.29	13.09	24.0	15.57	17.59	12.53
Merged-chr3-15332328-2	chr3	15332228	15332428	+	901.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001076679)	promoter-TSS (NM_001076679)	-26.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	9.29	4.53	15.4	15.28	22.09	9.72	14.28	19.21	5.51	13.05	10.05	3.76
Merged-chr3-122122269-3	chr3	122122181	122122381	+	901.705566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007378, intron 19 of 49)	intron (NM_007378, intron 19 of 49)	77821.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	22.61	15.85	12.55	15.69	17.59	24.77	9.97	16.91	11.8	10.04	24.12	5.64
Merged-chr1-125471486-3	chr1	125471374	125471574	+	901.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35747.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.46	11.82	3.99	14.88	6.14	14.74	11.96	11.05	15.74	11.05	13.57	8.14
Merged-chr5-135571491-2	chr5	135571496	135571696	+	901.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356630, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	1453.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.4	1.76	0.57	11.26	3.27	8.15	10.63	10.6	4.52	4.02	11.56	4.07
Merged-chr2-13561397-3	chr2	13561292	13561492	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12919.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	25.84	20.63	11.98	8.04	20.05	16.93	3.99	9.53	21.24	20.08	16.58	9.4
Merged-chr6-97398558-3	chr6	97398465	97398665	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60721.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	12.52	5.79	15.97	14.08	19.23	22.58	24.58	39.59	13.37	15.57	21.1	16.6
Merged-chr2-181278033-3	chr2	181277931	181278131	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198169, exon 2 of 10)	exon (NM_198169, exon 2 of 10)	9935.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	6.06	10.06	6.85	10.86	21.68	12.86	19.93	34.04	20.06	18.08	37.69	20.36
Merged-chrX-98964705-3	chrX	98964609	98964809	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	26928.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	11.71	11.57	8.56	7.64	16.36	14.11	11.29	17.89	10.82	15.06	15.07	11.28
Merged-chr6-82751173-3	chr6	82751075	82751275	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	23279.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	13.73	3.77	16.54	15.28	25.36	19.76	19.27	23.61	27.54	15.06	16.58	15.98
Merged-chr4-140952429-3	chr4	140952321	140952521	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008812, exon 16 of 16)	3' UTR (NM_008812, exon 16 of 16)	5481.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	15.75	9.31	12.55	16.09	10.64	12.54	5.31	7.82	24.39	21.09	24.12	18.48
Merged-chr7-46059161-2	chr7	46059047	46059247	+	901.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153057, intron 15 of 30)	intron (NM_153057, intron 15 of 30)	25451.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	4.04	6.29	5.13	9.25	5.32	7.21	8.97	8.13	7.67	6.53	17.08	10.96
Merged-chr18-62186233-2	chr18	62186129	62186329	+	901.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6129.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	9.29	8.8	25.1	3.22	14.73	10.66	8.97	8.36	5.7	5.52	10.55	9.71
Merged-chr1-52655354-2	chr1	52655263	52655463	+	901.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133829)	TTS (NM_133829)	24658.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.44	2.26	2.28	11.26	16.77	13.48	17.94	17.22	16.92	5.52	17.08	6.58
Merged-chr13-102895032-3	chr13	102894929	102895129	+	901.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134774.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	14.94	10.31	26.24	19.71	21.68	13.48	8.64	19.29	19.67	19.08	6.03	8.46
Merged-chr12-88472141-2	chr12	88472037	88472237	+	901.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-94814.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	1.21	2.52	2.28	2.01	19.64	19.76	21.59	18.11	11.41	17.07	14.07	13.16
Merged-chr7-19467772-2	chr7	19467676	19467876	+	901.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-9282.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	8.48	5.53	4.56	4.02	9.82	14.11	3.65	7.54	18.69	25.61	18.09	10.96
Merged-chr12-87488917-3	chr12	87488840	87489040	+	901.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-16641.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	12.92	12.58	17.11	18.1	17.59	19.13	8.64	12.64	25.18	21.59	25.63	9.71
Merged-chr1-64324205-2	chr1	64324108	64324308	+	901.5750119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-202819.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.04	4.28	8.56	4.02	13.09	6.59	13.29	14.44	17.7	10.04	31.15	12.53
Merged-chr2-122629211-3	chr2	122629111	122629311	+	901.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1414.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	9.29	25.15	13.12	13.67	22.91	14.74	12.95	16.49	23.6	27.11	34.67	12.22
Merged-chr2-6479152-3	chr2	6479036	6479236	+	901.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126400.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.27	6.54	21.68	14.48	10.64	12.54	12.95	18.36	15.74	13.05	30.15	15.04
Merged-chr6-100670545-3	chr6	100670353	100670553	+	901.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181590, intron 1 of 10)	intron (NM_181590, intron 1 of 10)	704.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	2.83	10.06	11.98	1.61	5.73	7.53	3.65	7.88	7.87	10.54	10.55	11.59
Merged-chr16-36753298-1	chr16	36753198	36753398	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021301, intron 19 of 21)	intron (NM_021301, intron 19 of 21)	31664.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	6.86	2.52	6.85	9.25	6.95	1.25	8.3	9.25	4.92	6.03	15.07	5.95
Merged-chr4-19682705-2	chr4	19682600	19682800	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	26304.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.65	4.78	15.4	7.64	19.64	15.37	15.94	32.86	8.65	21.59	12.56	12.53
Merged-chr1-78659207-1	chr1	78659107	78659307	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136226, intron 1 of 3)	intron (NM_001136226, intron 1 of 3)	767.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	1.21	1.51	1.71	2.82	7.77	2.51	6.64	8.72	2.36	5.52	4.52	2.19
Merged-chr3-103915014-3	chr3	103915033	103915233	+	901.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356556, exon 1 of 8)	exon (NM_001356556, exon 1 of 8)	1013.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	7.67	8.8	15.4	2.82	11.05	7.21	9.3	5.16	6.69	13.05	9.55	10.65
Merged-chr14-61676114-3	chr14	61676000	61676200	+	901.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	6273.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.48	9.06	8.56	7.64	15.55	13.17	4.32	9.34	24.39	12.55	17.08	14.1
Merged-chr7-7132970-1	chr7	7132870	7133070	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029584, exon 4 of 4)	exon (NM_029584, exon 4 of 4)	3785.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	6.06	2.77	3.42	6.03	1.64	6.9	9.3	11.5	3.74	3.01	5.02	2.19
Merged-chr6-136463654-3	chr6	136463564	136463764	+	901.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-48095.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	12.11	12.07	7.99	3.22	18.41	14.11	18.93	8.05	14.36	10.54	11.05	7.21
Merged-chr11-117358422-3	chr11	117358293	117358493	+	901.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017380, intron 8 of 9)	intron (NM_017380, intron 8 of 9)	26080.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	18.17	16.35	15.4	18.5	14.73	23.2	3.99	14.94	29.9	15.06	10.05	8.14
Merged-chr10-17527563-1	chr10	17527463	17527663	+	901.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-195665.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.23	3.02	2.28	1.61	18.0	12.86	8.3	8.55	3.93	11.05	9.04	3.13
Merged-chr15-61986157-3	chr15	61986051	61986251	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177353, intron 1 of 2)	CpG	810.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	16.56	9.06	9.7	11.66	3.27	19.13	16.94	5.86	12.98	9.04	20.6	7.83
Merged-chr13-44722208-3	chr13	44722124	44722324	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8550.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	15.75	4.28	13.69	12.47	13.5	30.73	10.63	14.69	17.9	20.59	21.61	8.77
Merged-chr5-32192259-3	chr5	32192150	32192350	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40458.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	9.29	10.31	15.97	9.65	58.09	53.62	40.86	40.18	50.55	65.27	44.22	30.7
Merged-chr16-18858749-3	chr16	18858657	18858857	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17880.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	14.54	23.14	17.11	13.67	19.64	15.68	10.96	13.32	18.1	24.6	17.59	8.77
Merged-chr9-64340675-3	chr9	64340572	64340772	+	901.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172519)	promoter-TSS (NM_172519)	101.0	NM_001177784	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	13.33	13.83	12.55	13.27	21.68	15.99	16.61	17.8	20.65	7.03	22.61	17.54
Merged-chr1-55029590-3	chr1	55029484	55029684	+	901.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2106.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	12.92	2.52	22.25	14.88	42.96	36.69	28.57	43.01	14.16	12.05	14.07	16.92
Merged-chr2-144258058-2	chr2	144257959	144258159	+	901.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024225, intron 4 of 12)	intron (NM_024225, intron 4 of 12)	8143.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	20.19	15.09	14.83	19.71	7.36	2.82	5.98	8.58	9.64	2.01	6.03	5.64
Merged-chr2-12318944-1	chr2	12318844	12319044	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17000.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	2.83	1.01	6.28	6.84	9.82	1.88	8.64	10.51	8.65	3.51	5.02	3.76
Merged-chr1-121508531-3	chr1	121508426	121508626	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19939.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	17.77	32.45	39.93	45.45	4.91	9.41	4.32	6.56	35.4	24.6	49.75	27.88
Merged-chr12-26464580-3	chr12	26464474	26464674	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4641.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	33.11	46.53	59.33	25.74	24.14	36.37	12.62	24.06	15.34	20.08	10.55	5.64
Merged-chr5-74794958-1	chr5	74794858	74795058	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR79|LTR|ERVL	-92055.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.63	1.26	3.99	3.62	2.86	6.9	17.27	9.7	0.0	0.5	0.0	0.63
Merged-chr18-11202488-1	chr18	11202388	11202588	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-149921.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	1.62	0.0	0.0	5.63	1.64	9.72	16.61	9.67	0.98	0.0	0.0	2.19
Merged-chr2-26133194-4	chr2	26133098	26133298	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6345.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	12.11	6.54	6.85	10.05	15.55	9.09	9.3	6.11	14.55	15.06	14.07	8.46
Merged-chr3-35909161-1	chr3	35909061	35909261	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033623, intron 4 of 6)	intron (NM_033623, intron 4 of 6)	20913.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	1.62	4.78	9.13	4.83	10.64	1.88	10.63	15.42	4.92	8.03	5.53	5.01
Merged-chr3-88380236-1	chr3	88380136	88380336	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1535.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	6.46	6.79	6.28	3.22	11.05	13.48	13.95	1.85	5.51	9.54	10.05	10.65
Merged-chr17-20944356-3	chr17	20944258	20944458	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-1096.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	14.54	13.58	7.99	11.26	11.05	10.98	15.28	17.58	10.23	5.02	7.54	11.9
Merged-chr7-4532546-3	chr7	4532436	4532636	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033548)	promoter-TSS (NM_001033548)	-94.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	23.82	16.6	5.7	19.31	9.41	30.42	7.64	18.56	39.93	27.11	29.14	8.77
Merged-chr6-89361934-3	chr6	89361906	89362106	+	901.295227	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008881, intron 1 of 31)	CpG	607.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	7.27	10.31	21.11	4.83	14.32	12.86	10.3	15.06	11.21	13.56	7.54	12.22
Merged-chr10-57463521-3	chr10	57463402	57463602	+	901.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22851.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	5.25	16.6	14.26	12.87	13.5	13.48	8.3	14.8	23.21	12.55	24.12	6.89
Merged-chr7-122955818-3	chr7	122955720	122955920	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	14639.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	16.56	10.06	9.7	12.07	36.41	29.48	14.28	14.83	20.46	33.64	33.67	12.84
Merged-chr13-102144014-3	chr13	102143920	102144120	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-375803.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.08	15.09	35.37	23.73	9.0	7.53	8.97	10.35	16.92	10.04	16.58	7.52
Merged-chr1-33873776-3	chr1	33873755	33873955	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 3 of 6)	B2_Mm2|SINE|B2	33766.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	1.21	8.55	1.14	10.86	12.68	9.09	7.31	7.18	12.19	12.55	13.06	8.46
Merged-chr15-25940571-3	chr15	25940473	25940673	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-129.0	NM_001277315	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	10.5	9.31	11.41	6.44	13.91	15.05	17.61	16.12	8.46	4.02	26.13	12.53
Merged-chr10-121476913-2	chr10	121476813	121477013	+	901.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-663.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	9.69	11.32	10.27	26.55	21.27	11.29	15.28	21.11	10.82	13.05	12.06	11.28
Merged-chr7-107620330-2	chr7	107620214	107620414	+	901.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	13470.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.4	4.02	3.99	4.83	10.23	6.27	3.65	12.95	19.47	16.57	8.04	4.07
Merged-chr8-73242249-3	chr8	73242136	73242336	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	111304.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	11.31	11.32	17.68	21.32	20.46	5.96	13.62	28.79	18.49	13.56	21.61	22.56
Merged-chr19-55217810-3	chr19	55217695	55217895	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	23441.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	12.52	10.31	12.55	4.42	15.14	36.69	12.95	7.4	19.28	19.58	6.03	7.52
Merged-chr8-84831675-3	chr8	84831570	84831770	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183358)	promoter-TSS (NM_183358)	595.0	NR_033145	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	24.63	21.63	11.41	10.86	17.59	35.12	3.32	10.51	20.26	24.6	21.1	17.54
Merged-chr5-148995233-3	chr5	148995044	148995244	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102383)	promoter-TSS (NR_102383)	70.0	NR_102383	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	9.29	3.02	5.7	10.86	8.18	5.02	16.61	11.64	5.11	14.06	9.04	10.96
Merged-chr17-88435523-3	chr17	88435462	88435662	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5142.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	10.5	15.09	10.84	8.45	17.18	28.54	18.27	19.88	31.86	21.59	30.65	17.23
Merged-chr9-83562472-3	chr9	83562379	83562579	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	14141.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	11.31	12.07	18.83	11.26	12.68	8.15	6.31	18.95	27.14	22.59	20.6	17.86
Merged-chr11-69063604-3	chr11	69063521	69063721	+	901.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3846.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	16.56	11.57	5.7	10.86	20.86	14.11	4.98	11.94	26.36	10.54	16.58	20.05
Merged-chr19-3562909-3	chr19	3562790	3562990	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360430, intron 1 of 22)	L1M5|LINE|L1	12859.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	16.56	19.12	22.25	12.87	16.36	16.31	15.28	20.97	12.0	13.56	15.07	6.58
Merged-chr7-139978724-3	chr7	139978584	139978784	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	71.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	12.92	10.31	25.1	19.71	16.77	25.71	12.62	24.2	17.11	12.55	24.62	7.21
Merged-chr17-10318827-3	chr17	10318732	10318932	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159517, exon 1 of 8)	exon (NM_001159517, exon 1 of 8)	529.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	14.54	16.85	7.42	13.67	10.64	21.95	16.94	8.89	12.19	21.59	21.61	10.96
Merged-chr4-137175768-3	chr4	137175683	137175883	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-10717.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	39.17	50.05	59.33	45.85	8.59	9.72	0.33	6.03	16.92	8.03	23.62	12.22
Merged-chr1-128548381-1	chr1	128548281	128548481	+	901.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43918.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.62	4.28	6.85	3.62	0.41	2.51	2.66	3.0	32.65	28.62	32.16	9.4
Merged-chr11-6165348-3	chr11	6165245	6165445	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	L1MC|LINE|L1	7986.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	14.13	16.85	9.13	5.23	9.0	5.33	4.32	12.73	14.16	0.0	10.55	9.71
Merged-chr4-102944518-2	chr4	102944408	102944608	+	901.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-41871.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	6.46	10.56	15.97	16.89	6.14	8.15	11.63	17.41	8.46	3.51	5.53	5.01
Merged-chr11-70849426-3	chr11	70849364	70849564	+	901.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	B2_Mm1a|SINE|B2	4703.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	21.8	12.07	21.68	14.48	16.77	17.87	12.95	5.55	12.59	13.56	14.57	7.52
Merged-chr1-177236929-3	chr1	177236822	177237022	+	901.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	B3|SINE|B2	11845.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	23.42	17.36	22.82	17.29	29.86	46.1	16.28	16.93	13.96	8.54	15.58	9.08
Merged-chr7-115149123-2	chr7	115149024	115149224	+	901.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	197850.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	9.69	10.06	25.1	30.97	2.86	2.51	3.32	1.32	12.0	7.03	27.13	10.65
Merged-chr10-122534929-3	chr10	122534812	122535012	+	901.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34979.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	8.08	9.06	13.12	14.08	18.0	15.37	16.94	21.36	19.67	12.55	24.12	12.84
Merged-chr10-44002705-3	chr10	44002611	44002811	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	2135.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	11.71	16.85	5.7	6.84	7.36	21.95	4.98	9.62	18.29	14.56	7.54	10.02
Merged-chr7-68070760-3	chr7	68070645	68070845	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	L1MD|LINE|L1	118488.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	21.4	10.56	13.12	17.29	20.46	12.23	21.26	25.07	12.0	12.55	26.63	14.1
Merged-chr2-124775866-3	chr2	124775646	124775846	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122165.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.86	2.01	1.14	5.23	4.5	9.09	4.32	8.41	5.51	6.03	7.54	5.33
Merged-chr5-112282884-3	chr5	112282778	112282978	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	6187.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	10.9	8.05	31.95	20.51	17.59	14.42	18.93	31.29	10.23	7.03	25.12	8.77
Merged-chr19-4283863-3	chr19	4283775	4283975	+	901.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-738.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	8.48	7.29	20.54	15.69	27.41	19.44	16.94	18.95	15.54	19.58	12.56	6.58
Merged-chr16-49957112-3	chr16	49957000	49957200	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153658, intron 1 of 1)	intron (NR_153658, intron 1 of 1)	1270.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	16.56	7.55	10.84	8.85	26.59	28.54	19.6	25.6	28.32	24.6	28.64	20.36
Merged-chr7-81843173-3	chr7	81843076	81843276	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13745.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	12.92	5.03	18.25	16.49	13.91	13.17	8.64	12.45	7.08	14.06	19.09	12.22
Merged-chr1-191458461-3	chr1	191458363	191458563	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 2 of 5)	B3|SINE|B2	6585.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	10.09	10.31	11.98	20.11	16.36	21.64	18.27	19.57	15.14	8.03	28.14	17.86
Merged-chr12-69790719-3	chr12	69790622	69790822	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	-15.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	10.9	16.85	10.27	8.85	13.5	13.48	11.29	10.88	14.16	3.01	19.09	2.19
Merged-chr4-123663011-3	chr4	123662909	123663109	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-2872.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	16.96	13.83	33.09	22.93	9.82	10.66	22.92	22.4	14.16	10.54	15.07	10.02
Merged-chr10-57743849-3	chr10	57743723	57743923	+	901.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41100.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	9.69	6.29	3.42	10.05	11.45	14.74	9.97	11.02	14.75	9.04	10.05	4.39
Merged-chr7-92725597-1	chr7	92725497	92725697	+	901.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15862.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	4.44	5.03	3.42	2.41	2.45	6.27	2.99	10.29	12.78	4.02	6.03	8.14
Merged-chr18-23874771-3	chr18	23874670	23874870	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70800.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.67	11.32	11.98	3.62	37.64	18.5	39.2	49.07	27.93	14.06	41.71	19.74
Merged-chr13-66933799-1	chr13	66933699	66933899	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	-727.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	4.04	10.06	14.26	8.45	7.77	5.64	8.97	8.94	11.8	7.03	9.04	15.66
Merged-chr15-29824371-1	chr15	29824271	29824471	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110967.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	1.62	2.01	5.7	3.22	6.95	1.88	10.96	14.02	4.33	2.51	6.03	1.88
Merged-chr10-23865132-1	chr10	23865032	23865232	+	901.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011979, intron 4 of 6)	intron (NM_011979, intron 4 of 6)	13670.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	0.0	0.0	1.61	0.41	0.0	0.0	0.0	12.19	6.53	14.07	2.51
Merged-chr2-91112691-1	chr2	91112591	91112791	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	-5453.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	7.67	4.02	2.85	1.61	17.59	28.54	6.98	20.72	9.24	6.53	5.53	2.82
Merged-chr19-24703850-1	chr19	24703750	24703950	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175013, intron 10 of 10)	L3b|LINE|CR1	29842.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	2.02	0.25	0.0	0.4	9.41	2.82	9.3	12.36	1.57	0.0	1.0	0.0
Merged-chr11-115135060-2	chr11	115134940	115135140	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-1048.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.5	1.14	0.8	5.73	9.72	12.29	16.82	14.95	6.53	14.57	12.22
Merged-chr15-31454701-1	chr15	31454601	31454801	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.63	2.52	9.13	10.86	13.91	4.39	2.66	8.13	5.11	0.0	4.52	1.88
Merged-chr15-34357919-1	chr15	34357819	34358019	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256161)	promoter-TSS (NM_001256161)	-47.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	4.04	1.76	3.42	8.85	4.09	0.0	10.96	6.0	5.9	1.0	5.53	2.19
Merged-chr11-90492771-3	chr11	90492664	90492864	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101847.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	15.75	10.31	19.4	16.49	13.5	3.76	9.3	12.11	10.42	4.52	15.07	10.65
Merged-chr12-84614753-2	chr12	84614653	84614853	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	2713.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	8.88	4.78	4.56	7.64	23.73	15.68	13.29	15.81	15.54	21.59	16.08	8.46
Merged-chr9-65454536-1	chr9	65454436	65454636	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6401.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	4.85	16.85	9.13	9.65	0.0	3.14	1.99	4.04	4.72	3.51	2.51	2.82
Merged-chr1-64052553-1	chr1	64052453	64052653	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-10052.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	2.83	6.79	3.42	5.23	6.95	15.99	19.6	8.16	3.54	9.54	6.53	3.13
Merged-chr11-77980870-2	chr11	77980783	77980983	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1933.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	5.65	9.56	10.27	10.86	10.64	5.02	10.63	6.53	4.52	6.53	9.55	3.13
Merged-chr2-167631280-2	chr2	167631264	167631464	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311131, intron 1 of 4)	CpG	641.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.27	7.04	3.99	7.24	6.55	4.7	9.63	5.41	12.59	5.02	15.07	17.54
Merged-chr3-41444530-2	chr3	41444444	41444644	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48655.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.25	0.75	13.69	16.09	5.73	4.39	11.63	25.88	1.97	1.51	5.02	1.57
Merged-chr19-53453913-1	chr19	53453813	53454013	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	10883.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.65	2.52	6.85	4.83	11.05	9.09	9.97	7.91	0.39	0.0	0.0	1.25
Merged-chr11-77410075-3	chr11	77409966	77410166	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-53847.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	24.23	15.34	17.68	10.05	20.05	21.01	14.28	24.93	18.88	27.11	16.58	17.23
Merged-chr1-6204919-1	chr1	6204819	6205019	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9743.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	6.86	5.28	9.7	12.07	3.27	8.78	9.63	20.27	6.88	4.02	7.03	6.89
Merged-chr10-66813054-1	chr10	66812954	66813154	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	107330.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	2.42	7.8	2.28	6.03	11.45	7.21	5.65	9.03	6.1	10.04	8.54	5.64
Merged-chr3-118071562-3	chr3	118071447	118071647	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-202611.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	13.73	6.54	11.41	13.67	29.46	13.8	13.62	32.16	23.01	26.61	19.09	15.98
Merged-chr15-62108312-1	chr15	62108212	62108412	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	69055.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	2.83	4.53	3.42	0.8	7.36	4.08	3.65	9.17	2.75	8.03	2.51	8.14
Merged-chr11-34776177-3	chr11	34776073	34776273	+	900.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	7732.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	10.5	11.82	13.69	24.53	11.45	23.83	12.62	11.47	20.65	20.08	29.65	7.83
Merged-chr19-3414495-3	chr19	3414413	3414613	+	900.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329667)	promoter-TSS (NM_001329667)	31.0	NM_001329667	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	18.57	14.84	13.12	15.69	10.23	19.76	17.61	14.94	18.69	15.57	29.65	10.96
Merged-chr6-124542612-3	chr6	124542512	124542712	+	900.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001097617)	promoter-TSS (NM_001097617)	-253.0	NM_001097617	50908.0	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	26.65	30.94	14.26	16.49	27.41	43.27	19.93	12.81	25.96	36.65	22.11	8.77
Merged-chr11-110448662-4	chr11	110448611	110448811	+	900.94165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-29804.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.88	5.28	1.14	3.62	15.14	6.9	3.99	2.07	9.05	10.04	12.56	6.89
Merged-chr10-80985766-3	chr10	80985648	80985848	+	900.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	CpG	15617.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	17.36	23.9	14.83	4.83	11.86	32.3	5.98	7.18	43.66	31.63	14.57	8.14
Merged-chr12-34195660-3	chr12	34195557	34195757	+	900.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 23 of 27)	MusHAL1|LINE|L1	237986.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	13.73	9.06	27.95	20.91	11.86	10.98	15.28	12.22	18.1	23.1	22.11	15.04
Merged-chr5-24876736-3	chr5	24876678	24876878	+	900.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 9 of 15)	intron (NM_145401, intron 9 of 15)	-25791.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	13.33	16.6	9.7	23.33	5.73	15.05	20.26	16.63	12.19	17.07	17.59	7.21
Merged-chr19-11118696-3	chr19	11118575	11118775	+	900.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	12203.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	18.98	20.88	15.4	10.86	33.96	18.19	28.23	18.59	12.19	14.06	2.51	5.95
Merged-chr2-133552885-3	chr2	133552791	133552991	+	900.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007553, exon 1 of 3)	5' UTR (NM_007553, exon 1 of 3)	732.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	12.52	13.33	9.7	20.91	22.09	15.05	10.63	13.96	11.41	8.54	9.04	8.77
Merged-chr13-105227172-3	chr13	105227070	105227270	+	900.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	Lx9|LINE|L1	65844.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	18.17	7.29	19.4	27.75	15.14	17.87	19.93	18.39	13.57	16.07	26.13	7.83
Merged-chr5-125406657-3	chr5	125406557	125406757	+	900.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16640.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	22.61	16.6	7.99	11.66	27.0	21.95	13.29	17.19	12.0	19.58	30.65	14.1
Merged-chr6-120159352-3	chr6	120159243	120159443	+	900.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-34480.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	13.73	3.77	15.97	20.51	22.5	11.29	19.93	18.31	10.03	7.53	8.54	10.96
Merged-chr7-106526818-2	chr7	106526787	106526987	+	900.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-85814.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	6.46	12.58	14.26	11.66	4.09	11.92	7.97	6.56	0.98	2.51	7.03	5.01
Merged-chr2-121855597-2	chr2	121855496	121855696	+	900.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11374.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	7.27	13.58	18.83	8.85	4.91	7.84	7.31	9.64	6.1	5.02	10.55	3.13
Merged-chr4-133613732-3	chr4	133613620	133613820	+	900.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 4 of 7)	intron (NM_001017968, intron 4 of 7)	-11552.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	12.11	12.07	13.12	15.28	25.36	15.99	25.91	29.94	12.39	11.05	14.07	9.08
Merged-chr3-146107625-3	chr3	146107526	146107726	+	900.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172864, intron 1 of 22)	intron (NM_172864, intron 1 of 22)	410.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	14.13	11.57	10.27	6.03	15.55	11.92	15.61	20.24	25.77	27.62	34.17	26.63
Merged-chr3-108401912-3	chr3	108401782	108401982	+	900.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004177, intron 9 of 33)	intron (NM_001004177, intron 9 of 33)	13612.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	23.42	24.65	10.27	11.66	13.5	13.17	9.97	14.83	12.39	12.55	16.08	9.08
Merged-chr10-87688012-2	chr10	87687919	87688119	+	900.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166224.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	2.02	1.76	2.28	6.44	2.86	10.35	11.96	15.31	18.49	25.61	28.64	10.02
Merged-chr3-116130978-4	chr3	116130892	116131092	+	900.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1304.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	10.5	12.83	6.28	6.44	4.91	12.86	17.94	6.06	8.46	14.06	9.55	9.08
Merged-chr9-123931138-3	chr9	123930960	123931160	+	900.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	37632.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.25	6.29	15.4	4.42	11.45	6.9	12.95	5.83	5.9	10.54	9.55	7.83
Merged-chr6-54160865-3	chr6	54160751	54160951	+	900.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-104007.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	12.11	6.79	13.12	10.46	23.73	21.95	20.93	29.3	15.34	24.6	21.1	17.86
Merged-chr5-65294413-3	chr5	65294306	65294506	+	900.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 8 of 24)	intron (NM_011258, intron 8 of 24)	41233.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	11.71	5.79	22.25	10.46	20.46	20.7	25.91	29.78	23.8	27.62	41.2	21.62
Merged-chr4-135885912-3	chr4	135885802	135886002	+	900.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9287.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	8.08	10.06	10.84	10.46	27.82	34.49	30.89	24.2	57.63	45.69	63.31	20.68
Merged-chr14-76171458-3	chr14	76171360	76171560	+	900.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60569.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	8.88	8.05	25.1	11.66	22.91	32.3	19.27	29.69	31.86	22.09	33.67	12.84
Merged-chr6-94509903-3	chr6	94509815	94510015	+	900.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9601.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	20.19	16.35	11.98	24.53	13.09	29.48	18.27	37.23	13.77	7.53	13.57	8.14
Merged-chr14-75131662-3	chr14	75131546	75131746	+	900.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	523.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	35.94	25.15	13.12	2.01	9.82	47.98	17.61	5.21	30.49	39.67	13.06	4.39
Merged-chr11-103246508-3	chr11	103246416	103246616	+	900.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	20885.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	11.71	10.82	13.12	12.87	10.23	13.8	20.26	19.63	14.16	20.08	11.56	10.34
Merged-chr8-24987635-4	chr8	24987548	24987748	+	900.71875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 11 of 21)	Lx4A|LINE|L1	29274.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	7.67	5.53	5.13	6.44	11.86	4.08	8.3	7.35	4.72	11.05	7.03	8.14
Merged-chr18-50030989-3	chr18	50030919	50031119	+	900.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	35.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	14.94	9.56	13.69	18.5	13.5	14.74	7.64	13.37	14.75	16.57	17.59	10.65
Merged-chr13-52985576-3	chr13	52985482	52985682	+	900.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4543.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	6.46	9.31	21.68	1.61	26.18	8.47	13.29	12.76	17.31	14.56	16.58	13.16
Merged-chr14-20928262-3	chr14	20928166	20928366	+	900.698425	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	13.33	7.29	25.1	19.71	13.5	13.48	10.63	28.46	13.77	9.54	13.06	13.47
Merged-chr1-74307653-3	chr1	74307551	74307751	+	900.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur2|SINE|Alu	-3315.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	14.13	13.08	11.98	12.87	15.14	20.07	7.31	13.68	10.62	14.06	19.09	20.99
Merged-chr6-116693766-3	chr6	116693655	116693855	+	900.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-19919.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	12.92	21.13	28.52	16.89	20.05	16.93	8.3	13.29	39.73	32.64	30.65	21.62
Merged-chr2-122610269-1	chr2	122610169	122610369	+	900.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025961, intron 1 of 8)	intron (NM_025961, intron 1 of 8)	1008.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.04	5.53	6.85	10.46	12.27	10.66	9.97	14.5	6.69	6.53	8.54	8.46
Merged-chr4-120914708-3	chr4	120914609	120914809	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10296.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	14.94	12.83	11.41	18.5	19.23	17.56	9.97	17.1	14.36	15.57	25.12	9.71
Merged-chr17-15743533-1	chr17	15743433	15743633	+	900.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007690, intron 17 of 35)	intron (NM_007690, intron 17 of 35)	38566.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.85	3.52	1.71	11.66	9.41	11.92	10.3	14.05	2.95	1.51	1.0	0.0
Merged-chr17-29164580-3	chr17	29164495	29164695	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360239, intron 16 of 21)	intron (NM_001360239, intron 16 of 21)	29539.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	18.17	16.35	21.68	20.91	36.0	40.14	31.89	47.19	10.82	9.04	7.03	8.77
Merged-chr2-32602848-3	chr2	32602751	32602951	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	3142.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	10.5	4.02	16.54	5.23	20.86	24.46	20.93	21.5	19.28	20.59	18.09	12.22
Merged-chr3-75277651-3	chr3	75277562	75277762	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	19.38	8.05	19.97	20.11	17.59	10.03	4.65	16.82	19.47	14.06	26.13	22.56
Merged-chr2-176708161-3	chr2	176708043	176708243	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	-210.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	14.54	9.56	17.11	16.89	15.96	22.58	31.56	6.36	8.85	14.06	19.09	9.08
Merged-chr16-91619008-3	chr16	91618935	91619135	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138664)	promoter-TSS (NM_138664)	-36.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	13.73	11.07	18.83	9.25	12.27	23.52	10.96	13.09	17.51	10.54	17.08	9.4
Merged-chr2-36214680-2	chr2	36214588	36214788	+	900.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15738.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	8.08	6.29	4.56	9.25	4.5	9.09	3.65	6.81	14.36	3.51	15.07	11.9
Merged-chr11-62470629-2	chr11	62470535	62470735	+	900.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039536, intron 1 of 6)	L1MB4|LINE|L1	12175.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	6.46	3.52	3.99	8.85	14.73	21.64	9.63	10.04	20.06	18.08	13.06	11.59
Merged-chr7-100661469-2	chr7	100661358	100661558	+	900.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163182, intron 2 of 7)	intron (NM_001163182, intron 2 of 7)	936.0	NM_013746	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	16.96	9.81	11.41	6.03	4.5	9.41	6.98	10.99	2.95	3.01	8.54	0.94
Merged-chr10-117715364-3	chr10	117715280	117715480	+	900.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-4622.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	45.63	43.77	35.37	10.86	47.87	77.77	28.9	8.21	66.87	84.86	46.73	24.43
Merged-chr13-113613567-3	chr13	113613482	113613682	+	900.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4982.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.06	10.56	11.41	7.64	16.77	11.92	20.93	11.64	15.14	19.08	21.61	6.58
Merged-chr5-134676359-4	chr5	134676258	134676458	+	900.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1890.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	5.25	12.07	10.84	13.27	19.64	18.5	13.29	16.71	8.46	9.04	13.06	5.64
Merged-chr4-44163297-2	chr4	44163197	44163397	+	900.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038993, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4241.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	4.04	6.04	9.7	2.41	7.36	10.35	9.63	11.44	12.19	7.03	8.54	12.22
Merged-chr14-44835284-3	chr14	44835181	44835381	+	900.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24094.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	17.77	13.58	22.25	27.75	10.23	9.72	9.97	26.61	17.11	17.57	7.54	10.02
Merged-chr18-30513320-3	chr18	30513215	30513415	+	900.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240450.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	10.9	19.62	11.98	13.67	15.96	12.86	5.98	13.15	20.26	15.57	13.57	6.27
Merged-chr3-103851080-3	chr3	103850955	103851155	+	900.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-8740.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	6.46	20.63	8.56	16.09	18.82	8.78	13.29	12.14	18.1	13.56	9.55	5.95
Merged-chr7-80154906-3	chr7	80154790	80154990	+	900.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-31951.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	15.34	11.32	11.98	10.05	27.41	29.79	16.28	20.83	25.57	25.11	11.05	13.47
Merged-chr13-109685500-2	chr13	109685398	109685598	+	900.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-218311.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	18.98	15.34	14.26	26.55	5.32	3.76	4.65	11.33	10.82	8.03	14.57	3.45
Merged-chr5-96914778-2	chr5	96914677	96914877	+	900.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6495.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	12.11	19.37	21.68	11.26	40.09	45.78	24.91	17.78	2.95	1.51	4.02	4.07
Merged-chr11-117783287-3	chr11	117783168	117783368	+	900.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195088, exon 2 of 16)	exon (NM_001195088, exon 2 of 16)	610.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	10.9	6.04	5.7	8.45	9.82	12.23	7.97	11.05	12.59	13.05	18.09	13.16
Merged-chr4-150136885-3	chr4	150136764	150136964	+	900.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-12108.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	12.11	9.81	11.98	9.25	11.05	18.19	5.65	17.13	14.55	12.05	25.12	17.23
Merged-chr15-81860996-3	chr15	81860887	81861087	+	900.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2661.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	13.33	6.79	9.13	17.29	17.59	16.62	8.97	15.45	18.88	21.09	21.61	20.68
Merged-chr1-154105011-3	chr1	154104918	154105118	+	900.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-96169.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	17.36	11.07	22.25	16.89	25.36	26.34	11.96	19.43	15.74	4.52	10.05	12.84
Merged-chr13-94702860-3	chr13	94702817	94703017	+	900.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-86026.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	5.65	9.31	7.42	14.08	5.73	12.23	9.97	16.91	11.21	9.54	13.57	11.9
Merged-chr13-97699135-3	chr13	97699029	97699229	+	900.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	48282.0	NR_152140	403201.0	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	12.52	5.79	22.25	22.12	8.59	9.72	23.58	17.64	16.72	8.03	20.6	7.21
Merged-chr11-5732896-3	chr11	5732814	5733014	+	900.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	8262.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	8.48	13.83	15.97	8.45	14.73	17.25	9.97	14.47	27.54	15.57	26.13	9.4
Merged-chr4-95341072-2	chr4	95340966	95341166	+	900.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-216441.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	6.06	8.55	3.42	9.65	1.64	2.51	5.65	5.58	34.81	29.12	27.13	28.51
Merged-chrX-120207783-2	chrX	120207669	120207869	+	900.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-82558.0	NM_001271809	245578.0	Mm.39691	NM_001081385	ENSMUSG00000034755	Pcdh11x	PCDHX|PCDHX11|Pcdh11	protocadherin 11 X-linked	protein-coding	7.27	7.8	14.26	14.48	36.82	20.07	63.11	22.32	0.0	0.0	0.0	0.0
Merged-chr1-174049562-3	chr1	174049443	174049643	+	900.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146716)	promoter-TSS (NM_146716)	-832.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	31.5	21.63	20.54	24.53	37.23	56.76	25.91	24.08	11.8	14.56	8.54	6.58
Merged-chr2-163929734-3	chr2	163929631	163929831	+	900.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11048.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	13.33	19.37	33.09	33.38	24.55	34.81	51.49	52.04	12.0	6.53	10.05	8.77
Merged-chr11-62609231-3	chr11	62609131	62609331	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198861, exon 3 of 4)	exon (NM_198861, exon 3 of 4)	4701.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	16.96	10.56	13.12	16.89	13.09	21.64	7.31	21.59	12.19	10.04	18.09	8.77
Merged-chr1-106549238-3	chr1	106549140	106549340	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-2609.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	13.33	12.83	9.13	8.04	18.0	12.23	10.3	21.98	12.39	7.53	16.08	19.42
Merged-chr9-49485405-3	chr9	49485308	49485508	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	817.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	19.38	9.31	22.82	16.09	12.27	14.74	6.31	12.98	13.18	13.05	15.07	4.07
Merged-chr11-85843424-3	chr11	85843280	85843480	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10765.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	10.09	8.8	6.85	7.64	15.14	14.74	13.62	14.44	12.0	14.56	18.09	11.28
Merged-chr17-28692089-3	chr17	28692014	28692214	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	-454.0	NM_001168513	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	10.5	10.31	4.56	10.86	15.96	18.19	7.97	7.43	17.11	14.06	12.56	10.02
Merged-chr1-151312688-3	chr1	151312594	151312794	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31792.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	10.5	14.09	14.26	17.29	21.68	17.25	11.29	21.0	14.95	19.58	23.11	12.53
Merged-chr1-152784364-3	chr1	152784269	152784469	+	900.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15784.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	9.29	14.84	10.27	12.87	11.86	26.97	9.63	12.81	21.05	17.57	21.1	20.68
Merged-chr14-69853088-3	chr14	69852985	69853185	+	900.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	12678.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	16.96	6.54	13.12	14.08	17.18	19.76	6.98	14.58	31.27	16.57	31.15	13.47
Merged-chr3-69182567-3	chr3	69182483	69182683	+	900.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39836.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	16.96	19.12	39.36	19.31	27.0	38.26	43.51	90.93	10.23	7.53	14.07	12.53
Merged-chr11-53492225-3	chr11	53492142	53492342	+	900.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12047.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	11.71	12.83	11.41	20.11	18.41	22.58	11.96	26.58	12.98	12.55	10.55	9.08
Merged-chr16-36645891-3	chr16	36645786	36645986	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20191.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.48	13.58	12.55	10.46	18.41	24.46	15.28	15.31	27.14	21.59	33.16	7.83
Merged-chr11-77816202-3	chr11	77816094	77816294	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291213, intron 2 of 40)	intron (NM_001291213, intron 2 of 40)	14896.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	25.04	19.12	15.4	9.65	16.77	23.83	5.31	16.91	23.6	22.59	21.61	14.1
Merged-chr3-137846757-3	chr3	137846652	137846852	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-17735.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	25.44	10.06	10.84	15.28	19.23	28.85	14.95	26.3	29.31	17.07	14.57	11.28
Merged-chr8-126665964-3	chr8	126665850	126666050	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72514.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	11.71	7.8	11.98	17.29	17.59	20.38	16.61	24.14	11.01	14.56	20.1	14.41
Merged-chr11-87762576-5	chr11	87762514	87762714	+	900.338074	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172449, intron 2 of 31)	intron (NM_172449, intron 2 of 31)	2073.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	14.54	11.57	15.4	20.11	4.91	11.92	0.33	2.13	12.19	16.07	5.53	8.77
Merged-chr11-79869986-2	chr11	79869880	79870080	+	900.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92407.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	8.08	1.51	3.42	4.02	13.09	13.17	14.62	16.4	19.08	8.54	13.57	14.1
Merged-chr4-34701715-2	chr4	34701607	34701807	+	900.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347062, intron 11 of 12)	ORR1E|LTR|ERVL-MaLR	-14269.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	2.83	6.54	5.13	3.22	15.55	10.66	13.29	17.97	17.31	28.62	16.58	3.76
Merged-chr14-25393126-2	chr14	25393023	25393223	+	900.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-66062.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	12.11	16.6	13.69	12.87	15.14	9.09	11.96	12.73	7.87	7.53	4.52	4.7
Merged-chr15-30520254-3	chr15	30520156	30520356	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	347663.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	10.09	11.57	8.56	11.66	10.23	21.64	18.6	33.25	29.5	35.65	31.66	17.54
Merged-chr10-44553836-3	chr10	44553751	44553951	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-95103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.46	9.81	9.7	12.47	23.32	29.48	13.29	22.96	13.77	23.6	18.59	20.68
Merged-chr11-63827460-3	chr11	63827356	63827556	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94828.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	16.96	14.59	22.25	12.47	14.32	24.15	10.3	6.76	21.64	36.15	14.57	4.7
Merged-chr6-42310841-3	chr6	42310729	42310929	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013491, intron 18 of 22)	intron (NM_013491, intron 18 of 22)	13811.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	19.38	11.82	17.68	11.26	13.5	27.91	8.97	18.56	11.6	20.59	27.13	15.04
Merged-chr5-135575683-1	chr5	135575583	135575783	+	900.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2634.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	8.08	4.78	3.99	2.82	14.32	13.48	9.97	9.22	9.05	14.56	6.03	1.88
Merged-chr11-76945672-3	chr11	76945567	76945767	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	11.0	NM_178645	104184.0	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	25.44	10.82	9.7	10.46	21.27	19.76	12.62	16.85	18.69	16.57	15.07	20.99
Merged-chr6-134115765-3	chr6	134115687	134115887	+	900.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	80087.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.27	9.31	9.13	11.26	19.23	18.19	10.96	18.31	36.58	36.65	45.73	28.19
Merged-chr17-48275110-3	chr17	48274994	48275194	+	900.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172623, exon 6 of 6)	3' UTR (NM_172623, exon 6 of 6)	10799.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	16.56	18.61	19.97	8.45	28.23	31.67	9.97	10.88	49.37	42.18	36.18	17.54
Merged-chr16-29944141-3	chr16	29944037	29944237	+	900.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34987.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	19.38	7.29	19.4	9.65	26.18	15.37	16.61	23.38	24.78	10.54	26.13	19.11
Merged-chr9-20645329-3	chr9	20645214	20645414	+	900.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	511.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	5.65	6.54	14.83	7.64	6.55	9.41	6.31	9.98	13.37	8.54	17.59	10.02
Merged-chr7-88327675-1	chr7	88327575	88327775	+	900.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49590.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	12.52	4.78	9.7	11.26	7.77	20.7	11.96	13.71	9.44	7.53	5.53	4.7
Merged-chr10-43841232-3	chr10	43841126	43841326	+	900.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	15319.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	14.13	6.54	16.54	12.87	18.0	22.58	24.25	17.94	26.55	14.06	35.17	12.53
Merged-chr6-50379388-3	chr6	50379295	50379495	+	900.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	3442.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	15.75	15.09	7.99	11.26	6.95	15.37	12.62	6.2	18.69	13.56	27.13	13.78
Merged-chr10-94344686-1	chr10	94344586	94344786	+	900.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	32737.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	2.26	1.14	0.0	6.95	3.14	0.33	1.82	7.67	12.55	19.6	3.45
Merged-chr11-69416080-3	chr11	69415994	69416194	+	900.1825560000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2419.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	19.38	10.56	6.85	5.63	4.09	8.47	6.64	4.07	12.19	10.54	23.62	19.74
Merged-chr4-128638695-1	chr4	128638595	128638795	+	900.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16007.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.25	1.76	0.57	2.82	3.27	0.63	1.33	0.76	27.93	17.07	17.59	21.93
Merged-chr9-110893649-3	chr9	110893528	110893728	+	900.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153354, intron 17 of 25)	intron (NR_153354, intron 17 of 25)	13306.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	10.9	14.34	11.41	8.85	17.18	18.19	19.93	17.97	13.96	12.05	21.1	11.9
Merged-chr7-80208961-2	chr7	80208882	80209082	+	900.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	10541.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	12.52	12.07	14.26	14.88	8.59	11.92	8.3	15.11	11.21	2.01	5.53	2.82
Merged-chr7-44136407-3	chr7	44136314	44136514	+	900.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008454)	promoter-TSS (NM_008454)	-876.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	11.71	13.08	27.38	17.7	12.68	13.48	16.61	17.33	11.41	9.54	24.62	14.1
Merged-chr15-102311667-3	chr15	102311558	102311758	+	900.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356312, intron 13 of 30)	PB1D10|SINE|Alu	-14458.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	21.4	11.32	9.7	8.04	10.23	18.5	7.31	15.53	25.37	21.09	21.1	13.16
Merged-chr3-130729562-3	chr3	130729475	130729675	+	900.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005859, intron 1 of 4)	intron (NM_001005859, intron 1 of 4)	754.0	NM_001199350	619547.0	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	10.5	8.8	14.83	8.04	15.55	13.8	8.64	9.64	19.47	15.57	26.13	13.78
Merged-chr5-3516892-3	chr5	3516779	3516979	+	900.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 6 of 7)	intron (NM_009873, intron 6 of 7)	-26954.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	12.92	13.33	8.56	16.89	16.77	25.4	7.31	14.69	19.47	20.59	25.63	7.21
Merged-chr4-53860191-3	chr4	53860085	53860285	+	900.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028053, exon 6 of 6)	3' UTR (NM_028053, exon 6 of 6)	34140.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	18.17	10.06	19.97	16.09	15.55	15.37	12.95	22.68	12.78	13.05	11.05	10.34
Merged-chr5-103746940-3	chr5	103746834	103747034	+	900.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7228.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	14.94	11.32	20.54	7.24	15.14	11.29	9.3	18.95	22.23	21.09	14.07	13.16
Merged-chr12-52850542-3	chr12	52850450	52850650	+	900.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151167.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	34.32	16.6	18.25	34.99	11.05	11.6	8.64	16.23	24.78	12.55	22.61	9.71
Merged-chr8-3288751-2	chr8	3288661	3288861	+	900.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-9144.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	8.08	2.77	7.99	8.04	13.91	12.23	9.97	17.47	12.98	10.04	19.6	10.34
Merged-chr5-111192109-1	chr5	111192009	111192209	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-138588.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.4	1.76	0.0	2.41	8.59	10.03	9.97	10.68	1.97	0.0	1.0	0.63
Merged-chr4-107686276-1	chr4	107686176	107686376	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2114.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.4	0.5	0.0	0.0	0.82	3.14	2.33	3.03	0.0	1.0	0.0	0.0
Merged-chr3-89520080-3	chr3	89519970	89520170	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080466)	promoter-TSS (NM_080466)	-94.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	13.33	5.79	7.42	16.09	28.64	46.72	28.57	39.17	16.52	20.08	26.13	19.74
Merged-chr16-33744867-1	chr16	33744767	33744967	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-49170.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.06	7.04	6.85	5.63	2.86	7.53	2.99	8.52	6.88	5.02	11.56	6.58
Merged-chr2-128828648-3	chr2	128828543	128828743	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355629, intron 5 of 18)	intron (NM_001355629, intron 5 of 18)	10340.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	24.63	16.1	4.56	17.29	15.96	19.76	15.28	14.36	17.7	6.53	10.05	8.77
Merged-chr10-8353711-3	chr10	8353590	8353790	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	165135.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	14.13	14.09	5.7	7.24	9.0	16.93	6.98	10.18	12.98	14.56	18.09	10.34
Merged-chr8-94802529-3	chr8	94802433	94802633	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7920.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	10.9	4.78	15.97	4.83	16.36	21.01	12.95	13.85	20.85	16.07	26.13	19.74
Merged-chr14-50936821-3	chr14	50936664	50936864	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-5915.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	4.04	4.02	3.99	8.85	9.41	12.54	13.95	10.09	12.98	8.54	22.61	17.86
Merged-chr17-78939185-2	chr17	78939081	78939281	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028611, intron 3 of 9)	intron (NM_028611, intron 3 of 9)	2046.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	2.42	5.28	9.7	4.42	10.64	7.84	5.31	18.25	68.05	96.91	92.46	48.24
Merged-chr10-53616454-1	chr10	53616354	53616554	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	13985.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	9.69	9.06	6.28	14.48	14.32	10.03	7.31	9.45	17.11	14.56	16.08	7.52
Merged-chr9-95562232-1	chr9	95562132	95562332	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_198414)	TTS (NM_198414)	2415.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	1.62	3.27	7.99	6.44	8.59	1.25	8.97	8.24	2.36	0.5	5.53	8.46
Merged-chr13-48931943-1	chr13	48931843	48932043	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033268, intron 5 of 17)	intron (NM_001033268, intron 5 of 17)	35885.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	2.42	1.51	1.71	1.61	1.64	2.51	4.98	7.4	4.13	0.5	2.51	3.13
Merged-chr1-93635161-3	chr1	93635080	93635280	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021537, intron 2 of 11)	CpG	547.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	11.31	9.81	7.42	7.64	18.82	19.13	25.24	17.94	17.7	11.05	27.13	10.65
Merged-chr18-30584043-3	chr18	30583947	30584147	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	311182.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	1.21	10.31	15.97	8.85	24.55	20.7	13.29	14.47	57.63	45.69	43.21	33.21
Merged-chr1-88235241-1	chr1	88235141	88235341	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001281466, exon 10 of 42)	exon (NM_001281466, exon 10 of 42)	8221.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.23	3.77	11.41	1.61	3.68	1.88	5.98	3.25	4.52	2.01	8.54	5.33
Merged-chr16-92822267-1	chr16	92822167	92822367	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3807.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.65	4.28	0.0	8.04	12.68	5.02	2.66	9.22	3.34	2.01	3.52	5.33
Merged-chr5-105519894-1	chr5	105519794	105519994	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	CpG	423.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	16.56	16.85	11.98	10.86	19.64	13.8	8.3	6.2	13.57	12.05	11.05	8.77
Merged-chr2-103009464-1	chr2	103009364	103009564	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63C|DNA|hAT-Blackjack	64049.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	1.62	3.52	2.28	8.04	15.96	5.64	10.63	14.52	6.49	3.51	5.02	3.76
Merged-chr4-141658906-3	chr4	141658708	141658908	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	5307.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.25	3.27	10.27	2.01	7.36	4.39	5.65	7.49	3.93	5.52	6.53	12.22
Merged-chr9-90061131-3	chr9	90061023	90061223	+	899.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 2 of 10)	intron (NM_001312649, intron 2 of 10)	6856.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	16.56	18.86	29.09	12.87	22.91	27.91	10.3	15.53	23.01	27.11	16.08	7.83
Merged-chr17-10328614-3	chr17	10328537	10328737	+	899.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	4035.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	9.69	10.56	9.7	9.65	8.18	11.6	10.63	9.39	11.41	6.03	11.56	4.7
Merged-chr7-80688876-4	chr7	80688815	80689015	+	899.9500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173863)	promoter-TSS (NM_173863)	-38.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	10.5	8.55	5.7	9.65	9.82	14.11	4.32	6.36	12.19	14.06	22.61	11.28
Merged-chr14-22085567-3	chr14	22085482	22085682	+	899.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	65870.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	9.69	13.33	33.09	15.69	9.82	13.48	16.28	21.36	24.0	17.07	38.69	10.34
Merged-chr8-104176116-3	chr8	104176032	104176232	+	899.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141925, intron 1 of 4)	intron (NM_001141925, intron 1 of 4)	5619.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	8.88	10.56	13.12	12.07	10.23	32.3	9.63	18.0	14.75	17.57	25.12	11.9
Merged-chr9-59598800-3	chr9	59598705	59598905	+	899.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361099, intron 2 of 10)	(TTC)n|Simple_repeat|Simple_repeat	9517.0	NM_001311092	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	24.63	12.58	11.98	24.53	17.18	29.16	17.27	7.93	28.52	11.05	18.59	16.29
Merged-chr11-75463063-3	chr11	75462951	75463151	+	899.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029739)	promoter-TSS (NR_029739)	-665.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	9.29	11.82	10.84	12.87	10.23	9.72	5.65	7.88	21.44	13.56	11.05	20.36
Merged-chr5-12455319-2	chr5	12455212	12455412	+	899.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028882, intron 2 of 17)	intron (NM_028882, intron 2 of 17)	72146.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	8.88	13.08	20.54	16.09	6.14	2.82	7.97	14.8	3.54	3.51	7.54	3.45
Merged-chr7-30634824-3	chr7	30634725	30634925	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007959, exon 4 of 6)	exon (NM_007959, exon 4 of 6)	1027.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	14.94	15.85	13.12	12.87	15.96	13.17	9.63	13.77	11.8	22.09	20.6	18.17
Merged-chr16-36665238-3	chr16	36665152	36665352	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	MER2|DNA|TcMar-Tigger	825.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.25	7.55	17.68	12.07	8.59	8.47	8.3	11.89	13.18	11.55	14.57	5.64
Merged-chr19-14668646-3	chr19	14668539	14668739	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70456.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	23.82	12.32	13.12	20.51	14.32	9.72	30.23	16.93	21.44	20.59	14.57	8.77
Merged-chr4-153958066-3	chr4	153957963	153958163	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163019, intron 1 of 2)	intron (NM_001163019, intron 1 of 2)	826.0	NM_001163019	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	10.5	10.06	9.13	10.05	13.91	10.03	6.31	12.9	16.52	20.08	18.59	14.72
Merged-chr4-136129551-3	chr4	136129446	136129646	+	899.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-14276.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.88	14.34	17.68	6.03	9.41	8.78	8.3	14.64	13.57	11.55	25.12	13.16
Merged-chr11-94630968-2	chr11	94630876	94631076	+	899.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133807, intron 1 of 6)	MIR|SINE|MIR	1152.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	12.92	13.33	19.97	10.86	2.45	7.84	2.33	5.44	6.69	9.04	2.51	4.39
Merged-chr15-72917605-3	chr15	72917504	72917704	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-107280.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	10.9	5.53	15.4	12.47	13.5	19.13	9.63	18.53	27.54	20.59	23.11	19.11
Merged-chr5-86190535-3	chr5	86190455	86190655	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310653, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	7346.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	69.45	74.7	112.38	105.78	4.91	3.76	9.3	5.97	74.94	71.3	119.09	66.1
Merged-chr19-9837142-3	chr19	9837037	9837237	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	62396.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	12.92	13.08	17.11	13.67	18.41	16.31	15.94	8.89	21.64	20.59	25.63	15.35
Merged-chr19-6141603-3	chr19	6141516	6141716	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	-479.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	14.13	22.13	9.13	11.66	15.14	20.38	8.64	10.77	24.39	9.04	15.58	14.72
Merged-chr11-97838425-3	chr11	97838328	97838528	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2352.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	11.71	20.12	10.84	6.44	24.55	53.62	23.25	11.89	32.26	23.6	25.12	22.87
Merged-chr14-44049726-3	chr14	44049616	44049816	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43298.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	25.44	12.32	17.68	20.91	19.64	14.42	8.97	15.59	13.57	14.06	17.08	15.66
Merged-chr2-160093360-2	chr2	160093230	160093430	+	899.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76677.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.44	4.02	1.14	1.21	10.23	12.86	11.96	8.07	17.51	19.08	10.55	9.4
Merged-chr8-70701515-3	chr8	70701434	70701634	+	899.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010592)	TTS (NM_010592)	3795.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	23.42	10.31	8.56	24.53	7.36	9.41	9.97	9.06	8.85	9.54	12.06	13.16
Merged-chr3-152105578-3	chr3	152105476	152105676	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016867, intron 4 of 5)	intron (NM_016867, intron 4 of 5)	60324.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	16.15	13.08	17.11	18.5	19.23	22.89	34.55	33.81	10.62	3.01	16.08	6.89
Merged-chr7-98120464-3	chr7	98120359	98120559	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-966.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	12.92	17.1	16.54	10.46	13.5	19.13	4.32	14.44	24.19	20.59	24.62	8.46
Merged-chr16-76786587-3	chr16	76786479	76786679	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7487.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	7.27	13.83	11.98	19.31	11.86	12.86	14.62	17.41	16.13	9.04	18.09	8.46
Merged-chr5-135806801-3	chr5	135806708	135806908	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11298.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	16.96	12.07	10.84	12.07	16.77	17.56	8.64	9.42	24.59	24.1	22.61	20.05
Merged-chr1-95314914-3	chr1	95314820	95315020	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	1292.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	10.5	12.58	10.27	12.07	12.68	20.38	19.27	28.09	19.47	17.07	26.63	10.96
Merged-chr15-12373738-3	chr15	12373644	12373844	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52248.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	9.69	6.04	10.27	12.47	15.96	14.42	21.26	26.78	8.06	9.04	26.63	17.86
Merged-chr4-133614613-3	chr4	133614469	133614669	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 3 of 7)	intron (NM_001017968, intron 3 of 7)	-12401.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	25.84	21.88	31.38	14.88	74.05	78.39	61.12	69.25	10.42	12.55	9.55	5.01
Merged-chr17-8901680-3	chr17	8901576	8901776	+	899.761108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	MTC|LTR|ERVL-MaLR	51691.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	13.73	4.78	18.25	17.29	11.05	9.41	16.61	22.77	25.37	11.55	24.62	9.08
Merged-chr5-32930957-3	chr5	32930851	32931051	+	899.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025426, intron 25 of 42)	intron (NM_001025426, intron 25 of 42)	67230.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	10.9	11.82	14.83	11.66	20.05	12.23	4.32	11.41	12.98	24.6	11.05	8.77
Merged-chr9-106367177-3	chr9	106367093	106367293	+	899.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1439.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	15.34	10.06	7.42	6.44	7.36	11.29	12.95	6.11	9.44	15.57	22.11	8.46
Merged-chr5-92318778-2	chr5	92318676	92318876	+	899.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33C|LTR|ERVL	-8752.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	6.06	6.04	12.55	2.82	11.45	14.11	6.98	13.82	18.88	19.58	14.07	5.64
Merged-chr19-55708111-3	chr19	55707994	55708194	+	899.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5890.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.86	14.34	15.97	16.89	12.68	18.19	19.93	25.63	9.83	11.55	25.63	13.16
Merged-chr17-35127057-3	chr17	35126958	35127158	+	899.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033477, exon 3 of 3)	5' UTR (NM_033477, exon 3 of 3)	656.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	16.96	14.09	20.54	11.66	10.23	16.31	8.3	10.37	23.21	14.06	32.16	21.3
Merged-chr10-25362387-3	chr10	25362262	25362462	+	899.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	2564.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	8.88	15.34	6.28	3.62	14.32	12.54	10.63	8.75	12.39	7.03	17.08	6.89
Merged-chr9-78463544-3	chr9	78463441	78463641	+	899.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026658, intron 9 of 11)	intron (NM_026658, intron 9 of 11)	15331.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	9.69	15.85	31.38	8.85	17.18	20.7	17.61	32.44	32.85	15.06	21.1	13.78
Merged-chr13-43549489-3	chr13	43549313	43549513	+	899.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 5 of 8)	intron (NM_001081059, intron 5 of 8)	10778.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	19.38	11.82	31.95	7.64	15.14	15.05	4.65	11.1	17.31	14.06	3.01	6.58
Merged-chr4-103123262-3	chr4	103123152	103123352	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3862.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	16.96	14.34	13.69	13.67	10.23	12.23	2.99	9.0	13.37	18.58	14.57	9.08
Merged-chr10-19098914-3	chr10	19098846	19099046	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42803.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	6.06	7.29	6.28	6.03	11.86	16.93	18.93	6.34	27.73	40.17	15.58	12.22
Merged-chr18-38348767-3	chr18	38348671	38348871	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9778.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	18.57	6.54	12.55	4.42	24.96	13.8	19.93	18.53	15.74	20.08	22.61	15.35
Merged-chr1-64367196-1	chr1	64367096	64367296	+	899.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165608.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.85	2.26	3.42	4.83	11.45	3.45	8.97	12.14	10.82	7.53	5.53	5.33
Merged-chr2-160018544-3	chr2	160018456	160018656	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	1903.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	16.96	19.37	15.97	9.25	15.96	23.52	14.28	9.67	28.91	15.57	17.08	10.34
Merged-chr15-100683239-3	chr15	100683135	100683335	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 4 of 7)	intron (NM_033612, intron 4 of 7)	4685.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	18.17	20.37	11.98	7.24	17.59	15.68	7.31	12.25	31.27	29.62	25.63	16.92
Merged-chr8-120114531-2	chr8	120114457	120114657	+	899.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	CpG	405.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	13.73	10.31	13.69	14.08	19.64	18.5	20.93	17.13	17.7	29.62	17.08	8.46
Merged-chr11-109410734-2	chr11	109410593	109410793	+	899.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15253.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.25	5.79	6.28	4.42	11.05	8.47	14.62	10.96	21.05	10.54	16.08	3.13
Merged-chr16-23557900-2	chr16	23557799	23557999	+	899.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-37084.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	2.42	2.52	8.56	12.87	2.05	6.59	5.98	13.71	17.51	11.05	10.05	14.72
Merged-chr9-119076756-4	chr9	119076747	119076947	+	899.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019676, intron 3 of 14)	intron (NM_019676, intron 3 of 14)	11414.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	6.06	6.04	1.14	0.0	20.86	20.07	14.95	10.82	16.92	5.52	13.57	11.59
Merged-chr1-144313573-3	chr1	144313471	144313671	+	899.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64467.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	17.36	12.58	16.54	21.32	11.86	11.92	8.64	23.02	21.83	12.05	30.65	13.16
Merged-chr6-87517275-3	chr6	87517178	87517378	+	899.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	15981.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	16.15	8.3	32.52	32.98	13.5	19.76	32.22	33.14	16.33	12.55	18.09	10.34
Merged-chr9-104402444-3	chr9	104402326	104402526	+	899.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23687.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	6.46	10.06	5.13	11.66	12.68	20.7	10.96	28.54	29.11	13.56	37.18	9.71
Merged-chr1-132316818-4	chr1	132316670	132316870	+	899.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	645.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	11.71	8.55	7.42	9.65	9.0	12.86	8.97	7.12	14.16	10.54	12.56	14.72
Merged-chr5-92000999-2	chr5	92000909	92001109	+	899.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13536.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	10.09	2.52	7.42	8.04	12.27	15.99	16.61	12.11	21.44	18.58	22.11	7.52
Merged-chr9-114780512-4	chr9	114780342	114780542	+	899.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	1551.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	6.06	7.04	5.13	6.03	5.32	15.05	6.31	5.8	7.87	15.06	7.03	10.96
Merged-chr7-110787491-1	chr7	110787391	110787591	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14887.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	1.62	1.51	6.28	8.45	15.55	14.74	9.3	11.5	3.15	5.52	1.0	2.51
Merged-chr1-136640126-1	chr1	136640026	136640226	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	15225.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.44	3.52	3.99	12.87	8.18	6.59	4.65	11.72	8.85	10.04	8.54	14.41
Merged-chr15-100599517-2	chr15	100599419	100599619	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304965, intron 1 of 10)	CpG	465.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	5.65	5.79	6.85	4.02	13.5	6.27	4.32	6.42	12.98	7.03	15.07	12.84
Merged-chr6-30076380-2	chr6	30076296	30076496	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164229)	promoter-TSS (NM_001164229)	75.0	NM_001164229	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	16.96	6.79	6.85	28.15	5.73	5.02	7.64	19.12	0.98	0.5	0.0	0.0
Merged-chr10-13933514-1	chr10	13933414	13933614	+	899.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32561.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.42	0.0	1.14	0.0	1.23	0.63	0.0	1.07	20.26	15.57	35.17	9.71
Merged-chr10-24591986-2	chr10	24591896	24592096	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3446.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.04	2.01	3.42	5.63	9.0	15.05	2.99	12.2	8.65	4.52	15.07	11.9
Merged-chr9-113792770-3	chr9	113792699	113792899	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	-531.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	13.33	9.06	16.54	17.29	19.64	12.54	9.97	20.05	10.82	5.52	22.11	10.34
Merged-chr2-66158733-3	chr2	66158612	66158812	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33919.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	9.69	6.54	31.95	23.33	11.45	20.7	16.28	25.12	13.18	16.57	19.6	13.16
Merged-chr12-8507530-2	chr12	8507445	8507645	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7536.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.4	5.53	7.99	8.85	11.45	21.01	15.28	19.74	16.72	12.55	15.07	22.24
Merged-chr8-22889622-2	chr8	22889526	22889726	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	30087.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.85	5.53	1.71	8.04	11.86	5.02	11.96	14.38	9.64	7.53	11.05	5.33
Merged-chrX-13502469-3	chrX	13502362	13502562	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	34790.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	18.17	15.34	25.1	10.05	15.55	19.13	14.28	20.07	13.77	11.55	16.58	10.34
Merged-chr10-22165801-3	chr10	22165702	22165902	+	899.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	7193.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	8.48	15.34	13.12	13.67	21.68	17.25	10.96	6.7	17.31	19.08	25.12	15.35
Merged-chr4-138066505-3	chr4	138066388	138066588	+	899.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	68663.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	12.92	19.87	14.83	18.9	20.46	20.38	12.29	17.27	15.74	9.04	9.55	10.65
Merged-chr2-19316363-3	chr2	19316258	19316458	+	899.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A-int|LTR|ERVK	-27959.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	8.88	10.31	12.55	20.91	4.91	9.72	14.28	14.94	21.24	7.53	16.58	14.41
Merged-chr2-84504472-3	chr2	84504391	84504591	+	899.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046046, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2382.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	8.88	11.32	7.42	9.25	15.96	14.11	10.3	22.29	64.91	55.23	76.38	38.85
Merged-chr2-3323331-3	chr2	3323246	3323446	+	899.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9282.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	8.48	15.34	23.96	14.88	27.41	7.53	8.97	25.6	17.9	18.58	22.11	9.08
Merged-chr15-99396218-1	chr15	99396118	99396318	+	899.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	URR1A|DNA|hAT-Charlie	2999.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	4.85	4.28	7.99	4.42	31.5	22.58	7.64	22.43	6.88	4.02	3.01	5.01
Merged-chr8-25241137-5	chr8	25241041	25241241	+	899.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39599.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.83	1.01	2.85	2.41	1.23	1.88	2.66	3.95	2.56	6.03	6.03	4.39
Merged-chr13-37827851-3	chr13	37827679	37827879	+	899.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	CpG	386.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	9.29	9.56	6.85	9.25	10.23	5.96	13.29	9.25	8.65	16.57	7.54	12.53
Merged-chr11-86908066-3	chr11	86907986	86908186	+	899.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	85676.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	11.31	7.04	3.99	7.24	20.86	12.86	11.96	9.87	18.69	15.06	19.09	15.35
Merged-chrX-142227856-3	chrX	142227774	142227974	+	899.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290533)	promoter-TSS (NM_001290533)	-63.0	NM_001161430	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	9.29	14.84	9.13	14.08	11.86	11.29	10.96	12.03	19.87	27.11	36.18	20.99
Merged-chrX-7312730-3	chrX	7312609	7312809	+	899.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	L1M5|LINE|L1	6649.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	24.63	32.2	20.54	12.47	23.73	40.45	10.3	17.86	22.03	25.11	14.57	7.83
Merged-chr2-129596531-1	chr2	129596431	129596631	+	899.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1069.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	31.09	26.41	18.25	19.31	20.86	17.87	22.26	6.56	20.46	39.16	24.62	15.66
Merged-chr8-71382782-3	chr8	71382698	71382898	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-846.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	24.23	20.12	12.55	12.87	17.59	24.15	15.94	11.19	43.47	44.19	21.61	13.16
Merged-chr11-4123381-3	chr11	4123281	4123481	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-4652.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	15.75	6.29	14.26	17.7	18.82	12.54	12.62	20.1	11.41	15.57	15.07	19.74
Merged-chrX-56566142-3	chrX	56566063	56566263	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16557.0	NM_001033372	270599.0	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	10.5	18.86	15.4	8.85	13.09	16.31	21.92	16.18	15.34	19.58	23.11	14.72
Merged-chr8-103632668-3	chr8	103632569	103632769	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045730, intron 1 of 4)	intron (NR_045730, intron 1 of 4)	28870.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	5.65	2.01	15.97	10.05	17.18	17.56	20.26	29.58	17.11	6.53	23.62	14.1
Merged-chr9-45406342-3	chr9	45406269	45406469	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007503, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	292.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	27.86	15.59	10.27	9.25	29.46	32.61	33.55	14.47	27.73	22.59	17.59	11.28
Merged-chr7-141167977-2	chr7	141167871	141168071	+	899.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	715.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	4.85	5.53	3.99	0.0	11.05	10.98	4.98	7.68	10.62	14.06	15.07	9.4
Merged-chr5-93264799-3	chr5	93264679	93264879	+	899.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2794.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	14.94	14.59	15.97	7.64	18.0	41.08	10.3	10.09	38.16	22.09	15.58	7.21
Merged-chr6-122557166-3	chr6	122557087	122557287	+	899.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009645, intron 1 of 4)	intron (NM_009645, intron 1 of 4)	3378.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	19.79	11.82	13.12	23.73	23.73	19.13	9.3	13.96	13.96	28.62	14.07	18.17
Merged-chr2-165234733-3	chr2	165234588	165234788	+	899.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174988)	promoter-TSS (NM_174988)	49.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	12.92	20.63	11.98	10.46	5.32	10.66	6.98	7.6	6.69	16.07	12.06	7.83
Merged-chr15-90305164-3	chr15	90305058	90305258	+	899.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48552.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	15.75	9.31	6.85	13.27	16.36	16.62	20.93	33.84	18.29	10.54	29.14	9.71
Merged-chrX-140540997-2	chrX	140540898	140541098	+	899.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_122039, exon 3 of 3)	non-coding (NR_122039, exon 3 of 3)	1670.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	6.46	1.76	3.42	3.22	12.27	6.27	10.3	4.99	4.92	5.52	18.59	11.28
Merged-chr3-15276162-4	chr3	15276114	15276314	+	899.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	56088.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	7.67	5.28	6.85	9.25	6.95	19.76	12.29	13.04	48.98	47.7	45.73	19.11
Merged-chr6-15715215-3	chr6	15715144	15715344	+	899.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5417.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	8.88	13.33	23.39	14.88	13.91	6.59	19.27	10.79	22.03	11.05	27.13	11.59
Merged-chr17-6782164-3	chr17	6782051	6782251	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	629.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	15.75	12.07	3.99	5.63	9.0	22.26	9.3	11.61	13.77	20.08	20.1	11.59
Merged-chr8-83425452-3	chr8	83425345	83425545	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009904, intron 13 of 14)	intron (NM_009904, intron 13 of 14)	17217.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	18.17	12.07	19.4	19.71	16.77	11.92	18.6	21.5	8.65	14.56	19.6	9.71
Merged-chr15-39933606-3	chr15	39933503	39933703	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	10391.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	19.38	12.32	10.27	12.87	18.82	34.18	25.58	21.06	16.72	20.59	16.58	9.08
Merged-chr11-119394497-3	chr11	119394405	119394605	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4033.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	14.94	10.56	3.99	6.03	11.86	9.72	2.99	4.96	24.98	10.54	14.07	2.51
Merged-chr9-88702340-3	chr9	88702244	88702444	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	URR1B|DNA|hAT-Charlie	17243.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	14.54	13.58	7.99	21.32	11.86	15.68	11.29	4.82	18.1	18.58	16.08	12.53
Merged-chr7-142533313-4	chr7	142533242	142533442	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011288, intron 1 of 4)	intron (NM_011288, intron 1 of 4)	225.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	15.75	21.13	9.13	21.32	13.09	11.6	19.27	13.07	23.01	19.58	15.58	22.87
Merged-chr6-129499665-2	chr6	129499563	129499763	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	7502.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	14.54	8.8	12.55	12.87	24.55	18.81	20.93	15.7	3.74	0.0	2.51	2.51
Merged-chr1-172331766-3	chr1	172331650	172331850	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2428.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	18.98	15.85	26.81	18.1	13.91	17.25	22.59	29.05	11.41	6.03	10.05	6.58
Merged-chr19-46607699-3	chr19	46607602	46607802	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	8596.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	17.77	10.31	7.99	6.84	19.23	21.64	13.95	14.1	40.91	31.13	40.2	15.66
Merged-chr16-65197457-2	chr16	65197382	65197582	+	899.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-91698.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	4.04	1.76	0.0	4.83	12.27	12.23	14.28	8.61	7.28	14.56	8.54	5.64
Merged-chr6-47561025-3	chr6	47560926	47561126	+	899.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	34004.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	14.54	14.09	7.99	9.25	9.82	26.03	11.96	13.37	22.03	17.07	17.08	1.88
Merged-chr17-69177266-3	chr17	69177146	69177346	+	899.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17890.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	12.92	9.31	18.25	10.46	10.64	11.29	12.95	16.93	17.7	12.55	19.6	14.41
Merged-chr19-37509934-3	chr19	37509861	37510061	+	899.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40457.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	13.33	9.31	8.56	14.88	11.45	14.11	4.32	10.12	13.37	17.57	17.59	8.77
Merged-chr19-56703247-3	chr19	56703136	56703336	+	899.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	10.9	9.06	21.68	12.87	19.23	10.98	16.94	17.94	18.88	18.58	19.6	11.28
Merged-chr11-95347059-3	chr11	95346944	95347144	+	899.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	B4A|SINE|B4	10026.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	8.88	7.04	10.27	13.27	20.05	18.5	12.29	12.39	25.57	29.12	31.66	10.96
Merged-chr4-49620100-2	chr4	49619994	49620194	+	899.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11966.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	7.67	7.55	5.13	6.44	9.41	16.93	16.94	9.36	13.18	17.07	19.6	10.65
Merged-chr15-101976174-3	chr15	101976074	101976274	+	899.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21887.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	8.88	8.8	18.83	7.64	18.0	37.0	46.84	47.66	29.31	38.66	29.14	15.04
Merged-chrY-1165748-3	chrY	1165636	1165836	+	899.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009484, intron 14 of 26)	intron (NM_009484, intron 14 of 26)	80023.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	9.69	9.81	29.09	16.89	7.77	24.77	18.27	30.56	22.03	22.09	35.68	12.53
Merged-chr16-31867008-2	chr16	31866916	31867116	+	899.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357281, intron 21 of 22)	L1M4c|LINE|L1	-11794.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	11.71	9.06	19.4	9.65	11.86	10.03	11.96	12.7	3.74	5.02	4.52	5.95
Merged-chr13-115101930-3	chr13	115101784	115101984	+	899.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033228)	promoter-TSS (NM_001033228)	80.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	5.65	8.55	11.98	12.07	11.45	4.39	14.95	12.95	15.14	19.58	7.54	12.84
Merged-chrX-73718817-3	chrX	73718719	73718919	+	899.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007435, intron 1 of 9)	intron (NM_007435, intron 1 of 9)	-1004.0	NM_001313698	27061.0	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	14.13	10.82	10.84	10.86	19.23	14.11	4.32	18.11	15.54	17.57	18.09	10.96
Merged-chr2-165914490-3	chr2	165914412	165914612	+	899.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29674.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	9.29	10.06	11.41	10.05	22.09	21.01	11.29	15.95	21.44	15.06	20.1	10.02
Merged-chr13-102664219-3	chr13	102664113	102664313	+	899.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29334.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	14.54	9.06	14.83	8.85	19.23	6.27	10.63	13.54	21.64	18.58	24.62	11.28
Merged-chr11-50213643-3	chr11	50213541	50213741	+	899.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2821.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	11.31	16.35	4.56	8.04	18.0	12.23	5.98	9.76	13.18	22.59	12.06	7.21
Merged-chrX-7879996-3	chrX	7879898	7880098	+	899.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138606, intron 3 of 5)	intron (NM_138606, intron 3 of 5)	1692.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	13.33	14.09	6.85	8.04	12.27	14.11	3.99	7.43	16.92	7.53	16.08	6.27
Merged-chr7-96476923-3	chr7	96476798	96476998	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-134934.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	8.48	12.07	7.42	20.11	10.64	6.9	14.28	9.67	5.51	6.03	10.55	9.4
Merged-chr11-68467744-1	chr11	68467644	68467844	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-35275.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.85	7.55	0.0	2.41	12.27	10.35	2.33	2.66	6.49	8.03	5.02	7.52
Merged-chr1-169368956-3	chr1	169368847	169369047	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	162517.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	17.77	17.61	27.38	37.4	7.77	7.21	14.28	26.47	14.95	14.56	27.13	8.46
Merged-chr14-103944837-1	chr14	103944737	103944937	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82305.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.23	0.5	0.0	1.61	9.82	2.82	10.3	10.65	3.93	2.01	3.01	3.76
Merged-chr3-15575835-1	chr3	15575735	15575935	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-770.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	4.85	4.78	15.4	6.84	5.73	8.15	7.64	8.21	4.52	7.53	0.0	1.25
Merged-chr3-89251613-1	chr3	89251513	89251713	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5140.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	2.02	9.56	2.28	4.02	8.59	3.14	2.99	1.85	1.38	7.03	6.03	5.01
Merged-chr6-53996792-1	chr6	53996692	53996892	+	899.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	18101.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	6.06	4.28	2.85	0.8	5.32	2.51	13.95	3.31	20.85	10.54	10.55	5.01
Merged-chr4-141031922-3	chr4	141031830	141032030	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	21293.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	16.56	9.81	1.71	10.05	9.41	22.58	7.97	13.46	19.67	19.58	21.61	12.22
Merged-chr18-50029990-2	chr18	50029900	50030100	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-984.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.25	11.57	6.85	6.84	5.73	6.59	6.98	13.09	16.92	19.58	24.62	6.27
Merged-chr10-59974839-1	chr10	59974739	59974939	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23069.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	7.27	3.52	4.56	7.64	3.27	0.31	7.64	22.99	6.69	1.51	7.54	3.76
Merged-chr13-13538778-3	chr13	13538702	13538902	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51607.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	9.69	4.78	28.52	14.88	22.09	15.37	14.28	29.36	21.83	25.61	18.09	26.63
Merged-chr14-63145608-1	chr14	63145508	63145708	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	23146.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.65	10.56	2.28	5.23	13.5	7.84	7.64	10.54	7.47	12.05	6.53	4.7
Merged-chr1-174084991-1	chr1	174084891	174085091	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4047.0	NM_146722	258717.0	Mm.377652	NM_146722	ENSMUSG00000049528	Olfr429	MOR105-1	olfactory receptor 429	protein-coding	0.81	1.01	0.0	1.61	9.0	3.14	4.98	11.38	2.36	0.5	4.02	4.7
Merged-chr12-25217425-1	chr12	25217325	25217525	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88251.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	6.06	4.02	9.7	2.41	6.14	7.84	6.64	6.87	6.49	5.02	12.56	5.64
Merged-chr9-40577358-3	chr9	40577256	40577456	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45973.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	10.9	12.83	14.26	10.86	18.82	16.93	16.61	13.93	14.75	6.53	21.61	6.89
Merged-chr12-108178413-2	chr12	108178297	108178497	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028262, intron 1 of 12)	CpG	887.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	4.44	3.02	2.28	5.63	9.0	7.84	4.65	7.68	14.36	5.02	15.07	9.4
Merged-chr8-104541341-1	chr8	104541241	104541441	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001301165)	promoter-TSS (NM_001301165)	32.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	6.46	3.77	2.85	0.0	2.05	3.14	5.31	1.88	0.59	5.52	4.02	4.39
Merged-chr6-89312640-1	chr6	89312540	89312740	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.81	1.51	2.28	0.4	10.23	4.39	5.65	8.55	3.34	2.01	2.51	1.57
Merged-chr3-107099368-1	chr3	107099268	107099468	+	899.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2199.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	2.83	5.28	7.42	7.24	4.5	7.21	4.65	2.66	16.33	10.04	10.05	1.57
Merged-chr4-135762620-3	chr4	135762472	135762672	+	898.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085509, exon 2 of 37)	exon (NM_001085509, exon 2 of 37)	2857.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	6.46	11.32	10.84	6.44	17.59	12.86	5.31	8.69	11.21	12.55	7.54	6.89
Merged-chr11-20982189-3	chr11	20982125	20982325	+	898.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109099.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	8.88	10.56	14.26	23.73	11.86	21.01	8.97	13.32	15.93	12.05	16.08	6.27
Merged-chr3-88441134-3	chr3	88441095	88441295	+	898.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105978)	promoter-TSS (NR_105978)	-244.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	8.88	8.3	4.56	5.63	8.59	12.86	7.97	7.68	6.29	7.53	7.03	5.33
Merged-chr15-95828911-3	chr15	95828794	95828994	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1178.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	18.17	19.37	14.26	10.46	18.82	22.58	14.95	13.15	19.28	20.59	14.57	7.83
Merged-chr10-7474425-3	chr10	7474334	7474534	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-957.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	18.98	17.86	25.1	4.02	14.73	18.19	10.63	6.34	31.27	30.63	20.1	11.59
Merged-chr15-102671936-3	chr15	102671855	102672055	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-89.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	8.08	15.34	3.42	8.85	25.77	31.36	16.61	17.5	32.45	25.61	29.14	16.29
Merged-chr5-144932010-3	chr5	144931924	144932124	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	33806.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	10.5	11.57	20.54	13.27	11.45	11.29	11.96	17.55	14.16	5.52	12.56	10.02
Merged-chr5-113873120-2	chr5	113873001	113873201	+	898.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	35605.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.4	1.01	1.14	0.0	13.91	8.47	8.3	16.35	10.62	13.56	15.07	11.9
Merged-chr9-86016139-1	chr9	86016039	86016239	+	898.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	173287.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	2.42	1.01	1.14	9.65	14.73	9.72	8.97	20.92	4.52	0.0	5.02	2.51
Merged-chr17-25332479-3	chr17	25332365	25332565	+	898.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13097.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	5.65	12.32	12.55	11.26	15.55	14.42	7.64	14.66	28.13	20.59	33.67	31.01
Merged-chr9-107313424-1	chr9	107313324	107313524	+	898.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	16765.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	2.02	1.76	3.42	6.03	5.73	3.76	0.66	2.89	17.7	11.55	21.61	11.28
Merged-chr7-45162300-3	chr7	45162211	45162411	+	898.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1610.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	20.19	16.85	16.54	16.09	26.18	21.95	7.64	18.08	9.83	8.03	8.04	8.14
Merged-chr7-28726784-3	chr7	28726676	28726876	+	898.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310687, intron 2 of 6)	LTR41|LTR|ERVL	9986.0	NM_015796	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	15.75	6.29	7.99	11.66	12.68	17.56	5.98	11.16	29.9	19.58	29.14	5.95
Merged-chr6-136742544-2	chr6	136742447	136742647	+	898.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	39195.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	16.15	15.34	13.12	11.66	19.64	23.52	11.29	27.08	8.65	7.53	7.54	10.96
Merged-chr6-149409122-2	chr6	149409015	149409215	+	898.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009753, exon 1 of 9)	5' UTR (NM_009753, exon 1 of 9)	131.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	4.85	8.8	7.42	8.04	14.32	12.23	8.97	8.1	11.41	11.05	13.06	9.4
Merged-chr17-81636966-3	chr17	81636871	81637071	+	898.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	101416.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	22.61	11.32	26.24	18.1	9.82	13.17	21.26	49.37	16.52	13.05	27.13	24.43
Merged-chr5-125382714-8	chr5	125382571	125382771	+	898.78125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7346.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	6.46	13.58	10.84	8.45	7.77	26.97	4.98	2.13	18.69	18.58	8.04	7.52
Merged-chr4-147960382-3	chr4	147960284	147960484	+	898.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19489.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	16.96	12.32	5.13	8.45	14.32	17.87	11.96	17.55	19.28	18.08	27.13	12.84
Merged-chr13-5777117-3	chr13	5777030	5777230	+	898.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80962.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	12.52	5.53	9.7	3.22	15.14	16.93	3.32	2.24	15.34	17.07	3.52	1.88
Merged-chr8-117264758-2	chr8	117264659	117264859	+	898.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	7740.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	1.21	3.02	10.27	2.41	16.77	7.53	10.96	10.54	9.64	12.55	20.1	10.65
Merged-chr10-91154162-3	chr10	91154059	91154259	+	898.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080129, intron 4 of 8)	intron (NM_001080129, intron 4 of 8)	16391.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	5.25	13.33	17.11	9.25	2.86	11.29	10.63	7.68	15.93	6.03	14.57	3.76
Merged-chr4-43520109-3	chr4	43520023	43520223	+	898.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277875, intron 2 of 8)	intron (NM_001277875, intron 2 of 8)	3431.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	36.34	25.15	30.8	15.69	18.0	14.74	8.3	21.5	18.49	22.09	15.07	10.65
Merged-chr7-55935327-2	chr7	55935227	55935427	+	898.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256131, intron 5 of 5)	intron (NM_001256131, intron 5 of 5)	27166.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.25	5.53	6.85	12.07	14.73	17.56	11.29	12.87	11.6	7.53	13.57	8.77
Merged-chr4-150548251-2	chr4	150548153	150548353	+	898.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	103921.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	15.34	6.79	7.99	14.88	7.77	6.9	7.64	14.24	0.98	0.0	2.01	1.57
Merged-chr12-87325646-3	chr12	87325548	87325748	+	898.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-25943.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	9.69	10.56	16.54	18.5	20.86	26.97	16.94	26.22	24.98	30.13	16.58	12.84
Merged-chr2-18765815-3	chr2	18765680	18765880	+	898.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4918.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	5.25	8.05	9.13	6.44	17.18	17.87	6.98	10.82	19.08	8.54	18.09	5.64
Merged-chr8-105265412-3	chr8	105265313	105265513	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033161)	promoter-TSS (NM_001033161)	765.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	16.15	16.35	14.26	23.33	20.05	13.8	13.62	16.46	16.52	17.57	13.57	9.08
Merged-chr10-67069170-3	chr10	67069064	67069264	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	27824.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	8.48	9.81	2.85	18.5	12.68	15.37	9.3	19.07	12.98	15.06	15.58	11.59
Merged-chr2-157447644-3	chr2	157447563	157447763	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 2 of 13)	intron (NM_001025395, intron 2 of 13)	23370.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	12.52	9.31	16.54	11.26	36.82	39.82	13.95	26.24	15.14	13.56	13.06	9.71
Merged-chr12-73780063-3	chr12	73779905	73780105	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121319.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	11.31	13.83	10.27	8.04	21.27	25.09	8.97	23.1	20.65	16.07	14.07	15.35
Merged-chr17-25681832-3	chr17	25681731	25681931	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35341.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	2.83	4.78	17.68	12.87	23.73	14.42	9.97	22.32	17.9	7.03	24.12	3.76
Merged-chr13-112811876-3	chr13	112811769	112811969	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008903, intron 1 of 5)	MIRc|SINE|MIR	11092.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	10.09	15.59	15.97	8.85	16.77	20.7	15.28	25.01	32.06	41.67	36.18	39.47
Merged-chr5-151070020-2	chr5	151069914	151070114	+	898.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359985, intron 3 of 12)	intron (NM_001359985, intron 3 of 12)	117407.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	3.23	6.04	6.28	8.04	16.77	17.56	4.98	15.5	12.59	10.04	19.6	14.41
Merged-chr4-141681948-3	chr4	141681834	141682034	+	898.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3782.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	10.9	11.32	23.39	13.67	13.5	14.74	7.64	14.66	23.41	26.61	30.65	19.74
Merged-chr7-122159310-3	chr7	122159119	122159319	+	898.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011121)	promoter-TSS (NM_011121)	-216.0	NM_011121	18817.0	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo like kinase 1	protein-coding	4.44	12.07	2.85	16.09	8.59	3.45	8.3	5.24	8.65	6.53	10.05	8.77
Merged-chr9-110449079-3	chr9	110448950	110449150	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 3 of 9)	intron (NM_001360306, intron 3 of 9)	27644.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	12.52	12.07	6.85	5.23	23.32	16.93	5.65	10.93	17.7	18.08	13.57	10.34
Merged-chr2-148900521-1	chr2	148900421	148900621	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25009.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	9.29	2.26	6.28	3.22	13.09	2.51	7.64	8.89	6.49	3.51	9.04	5.33
Merged-chr10-67717706-1	chr10	67717606	67717806	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145747.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	2.83	4.28	1.71	2.82	7.36	10.98	10.3	11.3	6.29	3.01	3.52	4.7
Merged-chr2-129912461-1	chr2	129912361	129912561	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99879.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	0.0	1.01	2.28	0.0	12.68	10.03	9.63	10.23	0.59	0.0	1.0	1.88
Merged-chr3-152427899-3	chr3	152427798	152427998	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	31214.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	4.04	5.53	15.97	15.28	9.0	9.09	9.97	20.69	14.75	6.03	14.07	4.7
Merged-chr17-24672371-3	chr17	24672273	24672473	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	2686.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	23.82	25.66	22.25	8.45	19.23	35.75	7.64	7.77	24.39	25.61	15.07	5.64
Merged-chr15-25987237-3	chr15	25987124	25987324	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144523, exon 3 of 6)	exon (NM_144523, exon 3 of 6)	2858.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	15.34	17.36	20.54	13.27	10.64	24.77	7.64	24.98	21.24	9.54	24.12	12.22
Merged-chr14-78548992-1	chr14	78548892	78549092	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12132.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	2.02	4.02	5.7	0.0	10.64	7.84	9.97	10.43	3.15	6.03	3.52	4.39
Merged-chr16-13671419-3	chr16	13671303	13671503	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	-455.0	NM_025976	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	8.48	14.34	6.28	8.04	3.68	4.08	4.65	7.49	9.05	9.04	7.03	8.77
Merged-chr10-118085979-3	chr10	118085879	118086079	+	898.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55808.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	18.17	20.88	9.7	17.7	14.32	16.62	14.95	19.4	7.28	11.05	18.09	10.65
Merged-chr9-41081106-2	chr9	41081003	41081203	+	898.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-1597.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.08	5.79	2.28	4.02	10.64	12.54	9.3	12.53	13.96	8.03	8.54	9.71
Merged-chr9-45221742-3	chr9	45221650	45221850	+	898.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-17675.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	15.34	14.09	22.82	13.27	14.73	22.89	16.28	15.7	23.6	16.57	14.57	7.83
Merged-chr2-163987667-3	chr2	163987573	163987773	+	898.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCb|LINE|L1	-7524.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	23.02	9.56	22.25	18.5	14.32	13.48	9.3	20.1	11.21	12.55	9.04	15.66
Merged-chr11-3190151-7	chr11	3190031	3190231	+	898.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 1 of 32)	RLTR33|LTR|ERVK	3332.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	7.67	10.06	9.7	3.22	6.14	6.9	10.3	4.21	17.31	22.59	10.55	20.05
Merged-chr14-51088693-3	chr14	51088469	51088669	+	898.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2508.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	2.42	8.3	5.7	7.24	11.05	5.33	10.63	4.85	2.16	8.03	8.04	5.01
Merged-chr18-73808742-3	chr18	73808647	73808847	+	898.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	6645.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	11.31	8.8	11.41	24.94	15.55	14.11	15.94	20.47	22.62	10.54	23.11	16.92
Merged-chr17-35980733-1	chr17	35980633	35980833	+	898.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001282013)	promoter-TSS (NM_001282013)	778.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	7.67	5.53	4.56	6.03	13.91	7.21	5.31	8.36	9.83	9.04	7.54	7.83
Merged-chr19-3907506-2	chr19	3907407	3907607	+	898.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	-374.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	7.27	14.09	10.84	6.84	11.86	9.41	16.94	8.83	4.13	15.57	12.06	9.4
Merged-chr9-40832205-1	chr9	40832105	40832305	+	898.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	30932.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.62	15.14	11.55	26.13	14.72
Merged-chr12-45081787-1	chr12	45081687	45081887	+	898.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7304.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	5.25	0.5	7.99	2.01	5.32	6.9	7.97	12.36	2.95	0.0	5.02	2.82
Merged-chr1-143992855-4	chr1	143992789	143992989	+	898.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	11260.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	16.96	6.29	4.56	21.72	11.05	8.78	8.64	7.4	9.05	4.02	6.03	5.01
Merged-chr19-53547738-1	chr19	53547638	53547838	+	898.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18420.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	6.86	5.03	2.85	1.61	5.32	7.53	11.96	17.8	1.57	1.51	2.51	4.07
Merged-chr18-20694167-3	chr18	20694082	20694282	+	898.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-28922.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	12.52	8.8	6.85	9.65	12.27	25.09	4.98	15.9	19.87	18.08	5.02	5.01
Merged-chr8-40965049-1	chr8	40964949	40965149	+	898.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 2 of 5)	ORR1F|LTR|ERVL-MaLR	38816.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.81	2.01	1.14	0.8	4.09	0.0	0.33	0.42	17.31	10.54	17.59	14.41
Merged-chr18-67490983-3	chr18	67490895	67491095	+	898.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176832, exon 14 of 14)	3' UTR (NM_176832, exon 14 of 14)	26146.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	16.56	8.05	15.97	20.11	17.18	9.72	24.91	45.67	14.75	11.55	16.08	12.84
Merged-chrX-158308736-3	chrX	158308637	158308837	+	898.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-265540.0	NM_177751	245684.0	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	12.11	10.56	24.53	15.28	3.27	8.15	4.98	11.86	16.92	10.04	32.66	9.08
Merged-chr4-34551365-5	chr4	34551300	34551500	+	898.470459	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	785.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	8.48	8.55	4.56	10.86	7.77	3.76	14.28	11.72	11.01	7.53	11.05	7.52
Merged-chr4-154925966-3	chr4	154925864	154926064	+	898.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178931, intron 3 of 7)	intron (NM_178931, intron 3 of 7)	2113.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	11.71	12.83	11.41	12.07	14.73	27.59	21.59	13.18	34.42	33.64	35.68	18.8
Merged-chr19-11050514-3	chr19	11050389	11050589	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	77.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	34.32	38.48	38.79	18.1	23.32	47.04	11.63	7.43	25.77	24.1	12.06	8.46
Merged-chr10-111977777-3	chr10	111977667	111977867	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178610, intron 5 of 9)	intron (NM_178610, intron 5 of 9)	5072.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	16.15	9.06	14.26	7.64	23.32	15.05	9.97	20.55	13.96	8.03	19.6	13.16
Merged-chr7-55958001-3	chr7	55957911	55958111	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	4482.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.86	15.85	14.26	7.64	16.36	15.99	11.96	17.69	27.14	16.57	20.6	9.08
Merged-chr14-31380460-3	chr14	31380351	31380551	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37226.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	10.09	8.55	8.56	16.89	15.14	10.35	14.62	22.85	25.37	9.54	30.65	21.93
Merged-chr11-55386626-3	chr11	55386538	55386738	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33442.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	10.9	11.32	20.54	20.91	7.36	13.48	3.32	15.36	24.19	19.58	21.1	16.6
Merged-chr18-58160669-3	chr18	58160581	58160781	+	898.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	49245.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	12.11	12.83	22.82	8.04	14.73	22.89	12.29	15.5	13.96	5.02	16.08	7.21
Merged-chr6-29998964-3	chr6	29998874	29999074	+	898.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	13645.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	20.59	15.34	19.97	17.29	27.41	17.56	13.29	20.78	12.59	9.54	26.13	7.21
Merged-chr12-32893456-3	chr12	32893334	32893534	+	898.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	60355.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	8.48	11.32	6.85	6.84	15.14	13.17	5.31	18.03	22.42	15.57	36.18	10.34
Merged-chr13-119817988-3	chr13	119817858	119818058	+	898.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	12259.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	8.88	9.56	10.27	12.87	20.86	14.42	18.27	17.86	20.06	16.07	21.1	16.92
Merged-chr5-77174980-3	chr5	77174871	77175071	+	898.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36234.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	6.46	12.83	14.83	9.65	4.09	10.66	1.99	8.47	12.19	18.58	23.11	13.16
Merged-chr11-120733776-3	chr11	120733655	120733855	+	898.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1734.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	16.56	5.79	26.24	18.9	22.91	11.29	24.25	24.28	8.85	7.53	21.61	10.34
Merged-chr11-60953963-3	chr11	60953851	60954051	+	898.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21894.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	14.94	18.11	9.7	17.7	24.14	17.25	6.31	15.42	25.37	21.09	18.09	14.1
Merged-chr7-106644654-2	chr7	106644535	106644735	+	898.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277179)	promoter-TSS (NM_001277179)	10.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.81	2.26	9.13	4.83	6.55	4.08	1.99	8.61	17.7	9.04	15.58	14.72
Merged-chr17-71250245-1	chr17	71250145	71250345	+	898.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001164885)	TTS (NM_001164885)	45591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.4	3.27	1.14	2.41	9.0	9.41	2.33	12.62	6.49	6.53	9.04	3.13
Merged-chr13-64364461-3	chr13	64364363	64364563	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009984, intron 7 of 7)	B4A|SINE|B4	6057.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	14.13	11.32	4.56	5.23	13.09	15.37	6.31	10.29	13.57	19.58	3.01	2.51
Merged-chr3-95511973-3	chr3	95511885	95512085	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12775.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	6.46	5.28	17.11	13.67	28.64	26.97	22.92	30.9	20.26	11.05	15.07	8.77
Merged-chr4-142021873-3	chr4	142021769	142021969	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	3971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	12.52	5.53	13.12	9.25	15.96	16.62	9.97	22.32	20.85	15.57	40.2	20.99
Merged-chr16-11286089-3	chr16	11285981	11286181	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-27728.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	25.04	21.38	16.54	3.22	13.09	12.23	6.64	4.99	33.44	41.17	13.57	11.59
Merged-chr13-17977832-3	chr13	17977715	17977915	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15536.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	16.15	12.07	16.54	9.65	12.68	14.74	9.97	11.58	23.01	17.57	14.57	10.34
Merged-chr13-20039825-1	chr13	20039725	20039925	+	898.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50682.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.46	4.02	4.56	4.02	8.59	13.17	7.31	12.14	4.52	9.54	4.02	1.88
Merged-chr12-52480710-3	chr12	52480624	52480824	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_136881)	promoter-TSS (NR_136881)	-115.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	29.07	17.36	12.55	22.93	23.32	15.68	19.6	29.58	17.7	11.05	16.08	9.71
Merged-chr10-80932399-3	chr10	80932295	80932495	+	898.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008655)	TTS (NM_008655)	2304.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	20.59	12.32	15.4	6.84	11.05	22.58	12.62	7.49	18.69	23.1	19.6	12.84
Merged-chr17-73031331-2	chr17	73031240	73031440	+	898.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-76645.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	18.17	21.13	9.13	21.72	1.64	0.63	0.0	1.21	14.75	22.09	17.08	12.53
Merged-chr2-158258161-3	chr2	158258067	158258267	+	898.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177850)	promoter-TSS (NM_177850)	-74.0	NM_177850	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	23.82	10.31	19.4	16.09	6.14	15.37	11.96	7.63	20.26	17.57	23.11	21.93
Merged-chr17-66710748-3	chr17	66710656	66710856	+	898.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 23 of 32)	intron (NM_001357625, intron 23 of 32)	-3700.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	5.65	14.59	14.83	3.22	10.23	13.17	9.3	13.77	21.24	21.59	20.6	8.77
Merged-chr4-118136244-3	chr4	118136142	118136342	+	898.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161823)	TTS (NM_001161823)	-1296.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	14.94	10.31	13.12	5.63	10.64	11.92	4.65	10.6	12.98	12.55	16.08	10.02
Merged-chr19-47135934-2	chr19	47135823	47136023	+	898.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133746, exon 2 of 3)	5' UTR (NM_133746, exon 2 of 3)	2371.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.85	6.54	2.28	8.04	11.45	9.09	5.65	10.32	12.98	7.53	18.59	15.35
Merged-chr17-17454836-3	chr17	17454761	17454961	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025681, intron 5 of 5)	intron (NM_025681, intron 5 of 5)	52175.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	12.11	11.32	9.13	8.45	29.86	36.69	15.94	17.58	20.26	12.05	25.63	10.65
Merged-chr17-33033295-3	chr17	33033175	33033375	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	106.0	NM_028543	73451.0	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	10.09	14.09	19.4	12.07	16.36	10.66	10.63	18.06	10.62	17.07	11.56	16.29
Merged-chr18-23888098-3	chr18	23888030	23888230	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-66558.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.65	2.26	14.26	8.04	71.59	42.33	73.08	96.87	20.26	31.13	29.14	14.41
Merged-chr17-26661921-3	chr17	26661814	26662014	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-14482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	21.0	4.78	11.41	23.33	28.23	9.72	12.95	22.23	24.78	15.06	20.6	18.8
Merged-chr6-38901358-3	chr6	38901246	38901446	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17640.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	14.94	8.05	19.4	14.08	18.82	20.07	17.94	20.94	10.42	16.07	22.11	13.16
Merged-chr9-22155775-3	chr9	22155697	22155897	+	898.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1049.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	17.77	12.07	9.13	13.67	22.5	18.5	17.94	12.45	13.77	15.06	19.09	9.71
Merged-chr2-68873931-3	chr2	68873827	68874027	+	898.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	12486.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	10.5	3.77	17.11	11.66	8.18	14.74	9.3	12.76	14.16	13.05	14.57	14.1
Merged-chr1-130430072-3	chr1	130429992	130430192	+	898.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151525, intron 2 of 3)	RLTR13D5|LTR|ERVK	-7049.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	14.54	5.03	12.55	1.61	4.91	12.54	9.63	4.26	21.64	11.55	16.58	11.59
Merged-chr17-4996503-3	chr17	4996449	4996649	+	898.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 1 of 19)	CpG-5917	1475.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.63	11.57	9.7	4.02	6.55	8.78	3.65	12.06	13.37	10.54	8.04	10.34
Merged-chr4-59035211-3	chr4	59035142	59035342	+	898.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025277)	promoter-TSS (NM_025277)	86.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	28.27	33.7	13.12	29.76	15.96	22.26	18.93	19.77	9.24	3.51	12.06	15.98
Merged-chr8-70793063-2	chr8	70792967	70793167	+	898.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-634.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	12.92	9.81	9.13	6.84	13.5	8.47	9.63	9.84	12.19	10.54	8.04	2.82
Merged-chr3-89378601-3	chr3	89378516	89378716	+	898.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	9055.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	4.04	20.12	10.27	14.48	21.27	21.32	11.29	8.47	16.13	22.59	14.57	9.4
Merged-chr12-56434757-3	chr12	56434658	56434858	+	898.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88864.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	16.96	17.86	36.51	15.69	10.64	16.62	8.64	17.97	20.65	10.54	14.07	9.71
Merged-chr4-121098113-3	chr4	121098010	121098210	+	898.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172700, exon 1 of 10)	5' UTR (NM_172700, exon 1 of 10)	133.0	NM_172700	230709.0	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	15.75	6.54	7.42	11.26	13.5	11.29	9.63	6.87	15.34	13.05	15.07	8.14
Merged-chr2-45194477-3	chr2	45194353	45194553	+	898.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77011.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	13.33	9.31	10.84	14.88	14.32	7.21	12.95	21.36	30.09	13.56	27.64	16.29
Merged-chr13-58274460-3	chr13	58274371	58274571	+	898.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019832)	promoter-TSS (NM_019832)	-283.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	12.11	6.04	12.55	15.69	12.27	11.92	7.64	12.22	13.96	14.56	14.57	11.9
Merged-chr2-119787523-3	chr2	119787398	119787598	+	898.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163701)	promoter-TSS (NM_001163701)	39.0	NM_177294	68925.0	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	12.52	13.58	6.28	16.89	19.64	10.98	11.96	11.36	15.54	15.06	12.56	13.16
Merged-chr12-3895430-3	chr12	3895335	3895535	+	898.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	3691.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	10.5	7.8	26.81	25.34	29.46	26.03	31.56	65.13	17.9	26.61	33.67	28.19
Merged-chr11-101959987-3	chr11	101959901	101960101	+	898.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045806, exon 4 of 4)	non-coding (NR_045806, exon 4 of 4)	7014.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	9.29	15.34	15.97	6.44	18.41	30.73	17.61	12.98	35.6	8.54	28.14	8.46
Merged-chr4-123921884-3	chr4	123921807	123922007	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	4474.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.46	10.31	7.42	14.88	10.64	12.86	11.63	14.1	15.74	19.08	10.05	10.02
Merged-chr4-11990095-3	chr4	11990006	11990206	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	23532.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	15.34	15.09	15.97	10.86	14.73	21.95	11.29	15.93	15.34	16.57	12.56	10.96
Merged-chr10-31445914-3	chr10	31445799	31445999	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009413)	promoter-TSS (NM_009413)	59.0	NM_001359365	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	12.11	12.58	10.84	18.9	29.05	21.64	21.59	31.79	14.16	8.03	24.62	20.05
Merged-chr11-63806750-3	chr11	63806634	63806834	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	115550.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	41.99	39.99	20.54	14.88	5.32	22.26	10.63	2.5	32.85	50.71	42.21	15.98
Merged-chr1-164060253-2	chr1	164060145	164060345	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-1831.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.23	4.53	10.84	7.24	11.05	9.72	10.96	9.93	21.05	24.6	20.6	11.9
Merged-chr10-37336974-1	chr10	37336874	37337074	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198048.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.83	1.76	2.28	11.26	10.23	9.41	11.96	13.88	10.42	8.03	9.55	6.27
Merged-chr17-87257681-1	chr17	87257581	87257781	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176808, intron 3 of 4)	intron (NM_176808, intron 3 of 4)	8266.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	1.62	5.79	1.71	0.4	8.59	1.88	2.99	6.06	8.65	5.52	3.01	1.88
Merged-chr3-31435739-1	chr3	31435639	31435839	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125420.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.42	3.77	0.0	5.23	13.09	8.15	16.28	16.46	7.08	3.51	20.6	7.21
Merged-chr8-119834175-1	chr8	119834075	119834275	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6404.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.27	15.85	5.7	3.62	11.86	11.92	1.0	1.23	3.15	4.52	2.51	1.25
Merged-chr1-74364348-1	chr1	74364248	74364448	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033345, exon 5 of 10)	exon (NM_001033345, exon 5 of 10)	2240.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	2.02	1.51	1.71	0.0	9.82	5.33	3.32	7.26	2.16	3.51	3.01	4.07
Merged-chr4-3607810-2	chr4	3607712	3607912	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32933.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	5.65	9.56	13.12	8.45	6.95	4.39	2.99	3.42	19.67	18.58	22.11	13.78
Merged-chr2-135562771-1	chr2	135562671	135562871	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16A1|LTR|ERVL	20449.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	1.62	0.0	2.28	1.21	4.5	1.25	7.64	8.5	5.9	3.51	10.55	5.01
Merged-chr5-21784573-2	chr5	21784483	21784683	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011188)	promoter-TSS (NM_011188)	582.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	6.06	4.02	6.28	4.83	6.55	10.66	3.65	6.25	11.6	7.03	9.55	5.64
Merged-chr1-157445098-2	chr1	157444976	157445176	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13492.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	11.71	8.8	18.25	10.86	9.82	3.76	8.64	9.9	7.08	9.04	11.05	9.08
Merged-chr3-97775898-3	chr3	97775784	97775984	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7870.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	11.71	12.32	15.97	9.25	9.82	14.74	5.98	12.39	23.41	20.59	10.55	14.1
Merged-chr2-84482041-3	chr2	84481933	84482133	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-5258.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	15.75	17.86	10.27	12.87	12.27	19.44	11.63	9.14	45.24	36.65	40.7	27.25
Merged-chr4-48322349-1	chr4	48322249	48322449	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010569, intron 3 of 16)	L2c|LINE|L2	42589.0	NM_001281977	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	1.62	2.52	4.56	5.63	4.09	2.2	9.3	6.45	5.51	4.02	12.56	4.39
Merged-chr12-76472247-1	chr12	76472147	76472347	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27750.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	8.08	10.31	5.7	8.04	9.41	9.72	2.66	8.64	10.42	3.01	6.53	1.88
Merged-chr8-94373211-4	chr8	94373073	94373273	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-13256.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.65	7.8	1.71	9.65	5.73	5.96	8.3	4.4	9.05	14.06	14.07	5.01
Merged-chr9-62997970-1	chr9	62997870	62998070	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17091.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.85	3.52	3.42	2.82	13.5	4.7	5.31	7.65	5.11	5.02	4.02	2.19
Merged-chr17-5630411-1	chr17	5630311	5630511	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	137811.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.65	1.76	1.14	4.02	10.23	2.82	6.64	8.3	6.69	7.03	12.06	2.19
Merged-chr19-24336623-1	chr19	24336523	24336723	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-56037.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.04	6.54	7.99	4.02	2.86	6.27	10.63	6.81	3.54	8.54	6.53	2.51
Merged-chr6-85068611-1	chr6	85068511	85068711	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	ID4|SINE|ID	902.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	4.04	2.77	2.28	6.44	3.27	3.76	4.65	3.62	1.77	1.51	3.01	3.45
Merged-chr7-64048516-4	chr7	64048392	64048592	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105343.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	19.38	11.57	13.69	11.66	21.27	17.56	20.26	26.86	16.92	18.58	12.56	15.35
Merged-chr8-79492047-1	chr8	79491947	79492147	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92579.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.4	3.27	8.56	8.45	6.55	1.88	8.97	7.93	8.06	8.03	10.55	2.82
Merged-chr7-27545228-3	chr7	27545120	27545320	+	897.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011116, exon 2 of 14)	5' UTR (NM_011116, exon 2 of 14)	7998.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	14.54	18.11	17.68	6.03	26.59	20.07	10.63	17.61	21.24	13.05	16.08	7.21
Merged-chr9-44196545-3	chr9	44196433	44196633	+	897.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	L1MB5|LINE|L1	37513.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	11.71	14.59	38.79	19.71	10.23	16.93	5.65	17.02	14.36	14.56	18.09	10.65
Merged-chr4-144971231-3	chr4	144971143	144971343	+	897.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78106.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	15.34	8.05	9.13	16.89	23.73	22.26	12.29	18.48	16.52	20.59	18.59	9.08
Merged-chr1-95598282-3	chr1	95598184	95598384	+	897.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	69310.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	15.34	7.04	7.42	10.86	15.14	22.26	17.61	30.7	25.18	16.57	21.1	10.02
Merged-chr5-125484191-4	chr5	125484117	125484317	+	897.94165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030210, intron 2 of 17)	B2_Mm1a|SINE|B2	8344.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	14.94	11.57	14.26	16.49	7.77	11.92	11.96	3.2	19.67	28.12	17.08	18.8
Merged-chr2-79621578-3	chr2	79621494	79621694	+	897.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13831.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	10.09	8.55	33.66	20.51	20.05	18.5	15.94	21.87	12.19	7.03	3.52	12.53
Merged-chr4-117253416-2	chr4	117253327	117253527	+	897.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1087.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	17.36	11.57	21.11	9.65	13.5	10.66	2.66	10.26	6.49	4.52	7.54	4.39
Merged-chr16-20316981-3	chr16	20316863	20317063	+	897.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183158, intron 2 of 8)	intron (NM_183158, intron 2 of 8)	8441.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	9.29	8.3	18.83	15.28	54.0	22.58	37.54	44.64	25.96	15.57	34.17	11.59
Merged-chr7-128728901-3	chr7	128728798	128728998	+	897.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	L1MD|LINE|L1	11531.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	21.4	14.59	18.25	8.85	18.41	9.09	10.63	15.81	21.05	16.57	10.05	10.34
Merged-chr15-59481979-1	chr15	59481879	59482079	+	897.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107781.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.81	1.51	0.57	0.4	22.09	33.87	11.63	11.07	1.97	4.02	2.51	1.25
Merged-chr18-23894436-3	chr18	23894329	23894529	+	897.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001162942)	TTS (NM_001162942)	-60259.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	8.88	8.55	7.99	12.07	33.55	39.2	50.82	67.12	24.98	41.67	52.76	27.57
Merged-chr3-97202118-3	chr3	97202019	97202219	+	897.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25245.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	15.34	13.08	14.26	5.63	8.59	9.72	6.98	11.44	19.28	14.56	8.04	10.96
Merged-chr6-134321626-1	chr6	134321526	134321726	+	897.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	MTC|LTR|ERVL-MaLR	-74703.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	10.5	3.77	7.99	4.02	9.82	14.42	10.3	9.93	1.18	0.0	1.0	0.63
Merged-chr17-67263087-3	chr17	67262991	67263191	+	897.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	91368.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	10.5	14.59	11.41	15.69	11.86	15.05	10.3	13.18	30.29	19.58	24.12	24.75
Merged-chr1-54896783-3	chr1	54896794	54896994	+	897.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	29493.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.86	2.52	9.7	7.24	13.91	4.08	7.64	8.52	5.7	4.52	5.02	5.64
Merged-chr2-26930596-3	chr2	26930510	26930710	+	897.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2901.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	20.59	16.85	4.56	8.85	20.05	23.52	10.96	14.75	24.59	24.1	24.62	9.71
Merged-chr9-64172856-3	chr9	64172763	64172963	+	897.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	68.0	NM_026507	68014.0	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	22.21	13.33	9.7	13.27	10.64	18.81	11.96	5.61	23.6	19.58	12.06	14.1
Merged-chr19-44384640-3	chr19	44384549	44384749	+	897.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	23060.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	13.33	12.83	15.4	8.45	9.82	22.89	19.6	15.36	15.54	11.05	14.07	4.7
Merged-chr4-135661517-1	chr4	135661417	135661617	+	897.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24940.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	8.08	6.54	4.56	2.82	6.55	18.81	14.28	10.4	5.7	5.02	6.03	4.39
Merged-chr2-44334225-2	chr2	44334130	44334330	+	897.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-268906.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	2.42	1.51	2.28	2.41	18.41	16.31	18.93	24.84	13.57	9.04	24.62	10.34
Merged-chr4-108406548-3	chr4	108406460	108406660	+	897.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024198, exon 1 of 3)	exon (NM_024198, exon 1 of 3)	153.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	11.71	15.09	10.84	9.65	10.23	11.92	16.94	13.68	20.85	14.56	17.59	12.53
Merged-chr1-155470642-3	chr1	155470538	155470738	+	897.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-53194.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	14.54	11.82	9.7	18.5	20.46	18.5	19.6	15.08	17.31	10.54	18.59	17.86
Merged-chr2-84798773-3	chr2	84798637	84798837	+	897.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-91.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	13.33	11.32	9.7	9.25	8.59	22.89	8.97	9.03	13.37	13.05	16.08	6.27
Merged-chr12-103443698-3	chr12	103443555	103443755	+	897.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281830)	promoter-TSS (NM_001281830)	25.0	NM_029803	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	19.38	9.56	7.42	8.85	23.73	20.07	15.94	25.88	15.93	13.56	22.61	8.46
Merged-chr5-102010860-8	chr5	102010820	102011020	+	897.6979369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	59001.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	19.38	10.06	30.8	18.5	19.23	7.21	15.28	27.87	16.33	15.06	16.08	12.53
Merged-chr7-118652896-1	chr7	118652796	118652996	+	897.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028930, intron 8 of 17)	MTC|LTR|ERVL-MaLR	19160.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	2.02	4.02	6.85	3.62	2.45	5.33	6.31	2.5	9.44	14.06	19.6	11.9
Merged-chr1-171561426-3	chr1	171561315	171561515	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2222.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	21.8	20.63	35.94	47.86	27.0	17.56	21.26	34.82	10.03	9.54	17.59	12.84
Merged-chr10-119047445-1	chr10	119047345	119047545	+	897.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152787, intron 2 of 3)	MTC|LTR|ERVL-MaLR	3054.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	3.23	3.52	6.85	3.22	0.41	6.59	6.31	2.97	14.36	12.55	15.58	9.71
Merged-chr16-57424370-3	chr16	57424271	57424471	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	71094.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	12.92	19.87	17.11	21.32	14.73	12.86	22.26	25.12	32.06	18.08	32.16	19.11
Merged-chr4-150009556-1	chr4	150009456	150009656	+	897.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-533.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	6.86	2.77	7.42	6.44	13.09	6.27	8.3	10.65	9.44	6.53	5.02	7.21
Merged-chr11-116643450-3	chr11	116643364	116643564	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10849.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	15.34	13.33	10.27	16.89	14.73	17.25	6.64	9.56	16.92	9.54	13.06	12.84
Merged-chr2-122408636-3	chr2	122408513	122408713	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-32207.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	12.92	10.82	34.8	12.87	9.0	11.29	10.63	14.55	12.39	17.57	15.07	14.1
Merged-chr13-111936662-1	chr13	111936562	111936762	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LFSINE_Vert|SINE|tRNA	68726.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	10.5	12.83	11.41	10.46	11.05	8.78	9.63	15.9	13.57	10.54	9.04	9.08
Merged-chr10-67966358-2	chr10	67966250	67966450	+	897.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152797, intron 2 of 2)	intron (NR_152797, intron 2 of 2)	7358.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	6.06	4.02	9.13	8.85	11.86	10.66	9.97	11.89	24.39	15.57	25.63	13.78
Merged-chr4-123340394-2	chr4	123340293	123340493	+	897.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	2859.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	6.06	6.54	6.85	4.83	8.18	13.8	7.64	11.58	13.96	20.08	22.11	8.77
Merged-chr1-34480993-3	chr1	34480885	34481085	+	897.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17427.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	9.29	10.56	29.66	14.88	16.77	10.35	14.62	15.34	32.06	22.59	35.68	19.74
Merged-chrX-166757295-3	chrX	166757191	166757391	+	897.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	95266.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	8.88	9.81	15.97	15.69	15.14	6.59	11.63	18.36	15.54	7.53	18.59	10.65
Merged-chr10-125966590-2	chr10	125966456	125966656	+	897.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177152, exon 1 of 19)	exon (NM_177152, exon 1 of 19)	337.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	8.48	7.55	11.98	16.09	11.45	17.56	11.63	11.94	10.03	14.06	23.11	11.28
Merged-chr1-74250317-3	chr1	74250228	74250428	+	897.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	13811.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	9.69	9.81	18.83	14.08	13.91	16.31	12.95	22.79	15.14	6.53	11.05	15.04
Merged-chr12-71831668-3	chr12	71831546	71831746	+	897.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	CpG	578.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	11.31	8.55	7.99	11.26	7.36	8.47	10.3	6.9	12.78	15.57	19.6	13.16
Merged-chr12-17554317-3	chr12	17554231	17554431	+	897.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9458.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	15.75	11.07	14.83	11.26	15.14	15.68	15.94	13.99	22.42	13.05	19.6	5.33
Merged-chr15-10869193-5	chr15	10869073	10869273	+	897.576172	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40122.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	4.85	9.56	3.42	6.84	9.0	6.9	16.94	11.07	13.18	14.56	12.56	5.64
Merged-chr11-97546089-3	chr11	97545995	97546195	+	897.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	(CA)n|Simple_repeat|Simple_repeat	29031.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	16.15	8.3	17.11	11.26	15.55	12.86	10.3	13.74	21.05	12.05	19.6	21.3
Merged-chr7-90138556-3	chr7	90138460	90138660	+	897.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	8347.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	11.31	11.07	13.12	17.7	24.96	15.37	24.91	34.96	17.11	13.05	32.66	13.16
Merged-chr9-100506873-3	chr9	100506774	100506974	+	897.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-18.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	17.77	19.12	9.13	9.25	14.32	27.59	10.3	9.67	30.09	11.55	27.64	3.76
Merged-chr6-88084665-4	chr6	88084616	88084816	+	897.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133933, exon 1 of 10)	exon (NM_133933, exon 1 of 10)	243.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	7.27	9.56	9.7	10.46	15.55	8.47	18.27	8.66	14.95	20.59	21.61	16.92
Merged-chr1-4907225-3	chr1	4907173	4907373	+	897.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48945.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	7.67	8.55	6.85	14.08	7.77	10.98	10.3	7.96	9.64	5.02	12.56	6.58
Merged-chr17-28710008-3	chr17	28709810	28710010	+	897.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	17342.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	10.5	12.32	16.54	10.05	6.55	9.09	5.98	10.96	11.8	10.54	2.01	5.64
Merged-chr13-24633320-3	chr13	24633193	24633393	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-5355.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	8.08	8.55	19.97	15.28	8.18	21.95	2.66	12.39	11.41	9.04	13.06	5.01
Merged-chr19-12469004-3	chr19	12468899	12469099	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	8220.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	29.07	19.62	19.97	10.05	18.0	25.09	27.9	21.25	12.98	4.02	12.06	5.95
Merged-chr11-116683929-1	chr11	116683829	116684029	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009180, intron 5 of 8)	intron (NM_009180, intron 5 of 8)	9332.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	8.48	5.28	6.28	6.03	4.09	9.72	6.64	9.45	10.23	5.52	3.52	4.7
Merged-chr1-36134758-2	chr1	36134660	36134860	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	9553.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	9.69	5.79	5.7	3.22	6.14	20.38	2.33	12.59	8.65	16.07	17.08	10.02
Merged-chr19-41384726-2	chr19	41384604	41384804	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	366.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.67	14.84	12.55	8.85	13.91	27.59	10.63	9.03	19.08	20.08	11.05	16.92
Merged-chr9-32159409-2	chr9	32159308	32159508	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195632, intron 4 of 21)	intron (NM_001195632, intron 4 of 21)	43272.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	8.08	18.36	15.97	14.48	8.18	10.03	14.62	16.09	5.11	3.51	4.02	2.19
Merged-chr1-87851490-1	chr1	87851390	87851590	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1797.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	5.65	7.29	7.42	1.21	5.32	13.48	5.31	8.13	11.01	7.03	6.53	4.7
Merged-chr6-135250827-1	chr6	135250727	135250927	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-2943.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.62	1.51	6.28	4.83	7.36	4.39	18.93	14.92	1.18	1.51	0.5	1.25
Merged-chr13-38528900-1	chr13	38528800	38529000	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-76.0	NM_001289598	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	6.86	7.29	9.7	3.22	7.77	10.03	7.97	13.15	6.88	1.0	9.04	6.58
Merged-chr2-22775059-1	chr2	22774959	22775159	+	897.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	732.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.63	4.78	3.99	7.24	3.27	4.39	8.3	2.24	11.41	14.06	7.03	4.7
Merged-chr7-128234986-3	chr7	128234885	128235085	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-2372.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	12.92	5.03	10.27	10.86	12.68	23.2	12.29	11.38	19.87	14.56	24.12	22.24
Merged-chr8-126820768-1	chr8	126820668	126820868	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28252.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	5.25	5.79	5.13	5.23	17.59	8.47	6.64	10.32	5.7	10.54	2.01	2.19
Merged-chr7-25848204-3	chr7	25848089	25848289	+	897.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31659.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	11.71	6.79	16.54	12.47	19.23	10.66	4.32	12.22	24.0	20.08	11.56	9.71
Merged-chr5-138740331-2	chr5	138740244	138740444	+	897.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14737.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	4.85	6.54	8.56	14.48	17.59	22.89	17.94	16.93	15.93	16.57	13.57	9.4
Merged-chr15-54919350-3	chr15	54919253	54919453	+	897.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285994, intron 2 of 25)	intron (NM_001285994, intron 2 of 25)	793.0	NM_015744	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	9.69	10.56	10.84	16.09	24.14	13.8	17.94	19.74	24.39	26.11	26.63	12.53
Merged-chr14-79485737-3	chr14	79485636	79485836	+	897.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	L1M3|LINE|L1	-4468.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	8.48	14.34	25.67	22.52	14.32	25.71	11.96	22.12	22.82	7.03	33.16	26.31
Merged-chr14-73123969-2	chr14	73123865	73124065	+	897.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18545.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	8.88	5.79	5.7	7.24	10.64	3.14	3.99	8.66	15.93	12.55	8.54	8.77
Merged-chr3-90255044-2	chr3	90254948	90255148	+	897.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	1190.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	12.11	6.29	6.85	7.24	6.14	26.03	6.64	8.89	17.9	19.58	14.07	14.1
Merged-chr6-146410395-2	chr6	146410282	146410482	+	897.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 9 of 56)	intron (NM_019923, intron 9 of 56)	91841.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	15.34	13.33	11.98	6.03	12.27	11.6	12.29	6.98	29.5	16.57	30.65	20.05
Merged-chr10-17698098-3	chr10	17698000	17698200	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.85	11.07	13.69	8.45	29.05	20.07	22.59	25.6	17.31	32.64	25.63	17.23
Merged-chr7-118485130-3	chr7	118485024	118485224	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033380)	TTS (NM_001033380)	6851.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	9.29	24.9	8.56	13.27	18.82	12.54	6.31	15.9	17.31	16.57	8.04	5.01
Merged-chr18-30530314-3	chr18	30530197	30530397	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	257432.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	7.27	10.56	1.14	5.23	28.64	21.64	21.59	28.93	32.45	39.67	23.11	22.56
Merged-chr2-14336036-1	chr2	14335936	14336136	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52362.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	5.65	4.28	7.99	10.86	9.82	3.45	13.29	9.62	5.7	6.03	11.56	4.7
Merged-chr2-79428832-3	chr2	79428683	79428883	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001048176, exon 1 of 13)	exon (NM_001048176, exon 1 of 13)	205.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	5.65	4.28	11.41	4.42	3.27	7.84	8.3	8.89	8.06	10.54	8.54	10.96
Merged-chr18-77822049-1	chr18	77821949	77822149	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25659.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	2.42	4.28	2.28	4.02	10.64	8.47	3.65	15.73	3.54	4.52	1.51	1.88
Merged-chr2-117172593-2	chr2	117172479	117172679	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001277256, exon 5 of 5)	3' UTR (NM_001277256, exon 5 of 5)	-12548.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	6.46	7.04	19.4	8.85	11.45	3.76	7.64	7.79	16.33	18.08	21.1	2.19
Merged-chr10-63164779-1	chr10	63164679	63164879	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182992, intron 4 of 19)	intron (NM_182992, intron 4 of 19)	39173.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	5.25	5.03	6.28	6.03	6.14	10.35	9.3	13.51	13.77	7.03	7.03	0.63
Merged-chr5-21351859-3	chr5	21351737	21351937	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	MusHAL1|LINE|L1	-20836.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	11.71	12.32	15.4	9.25	13.09	15.68	14.62	17.19	22.03	11.55	16.58	7.21
Merged-chr10-39613192-3	chr10	39613127	39613327	+	897.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134000, exon 1 of 9)	5' UTR (NM_134000, exon 1 of 9)	293.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	3.23	12.07	12.55	8.04	12.68	14.74	13.95	11.89	9.83	12.05	18.09	13.16
Merged-chr1-193859031-2	chr1	193858937	193859137	+	897.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-351507.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	2.42	3.52	5.7	2.41	5.73	11.6	7.97	6.98	7.47	9.54	10.55	2.82
Merged-chr17-5728350-3	chr17	5728267	5728467	+	897.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 7 of 8)	MTC|LTR|ERVL-MaLR	-70290.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	14.54	12.32	33.66	29.36	8.18	16.31	16.94	24.2	25.77	13.05	20.6	14.72
Merged-chr11-49848586-3	chr11	49848481	49848681	+	897.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	1830.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	10.9	10.06	11.41	10.05	9.41	5.64	9.3	8.21	14.16	11.55	9.55	11.9
Merged-chr10-51824105-2	chr10	51824007	51824207	+	897.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-66913.0	NR_045158	71090.0	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	6.86	3.77	13.69	5.63	12.27	10.03	9.63	10.79	18.1	16.07	19.09	6.27
Merged-chr19-34751257-1	chr19	34751157	34751357	+	897.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4146.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.04	4.28	3.99	12.07	10.64	8.15	7.31	10.43	3.74	3.01	7.54	1.25
Merged-chr11-3166697-4	chr11	3166586	3166786	+	897.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	B3|SINE|B2	26777.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	17.77	16.35	7.42	15.28	17.18	12.86	17.61	17.07	0.2	0.0	0.0	0.0
Merged-chr9-90198653-3	chr9	90198573	90198773	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35695.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	23.42	24.4	17.68	11.26	17.18	41.71	16.28	8.07	23.21	25.61	30.65	20.68
Merged-chr19-6268303-3	chr19	6268207	6268407	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3463.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	14.54	14.34	6.85	9.65	18.41	24.15	4.65	7.18	21.05	29.12	27.64	14.72
Merged-chr11-75738092-3	chr11	75737982	75738182	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	5195.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	15.34	18.86	31.95	22.93	16.36	13.8	8.3	14.07	22.42	13.05	12.06	8.46
Merged-chr4-108369803-3	chr4	108369708	108369908	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099303, intron 2 of 2)	B3|SINE|B2	13847.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	8.08	6.79	17.68	25.34	6.55	8.78	11.29	13.15	18.29	15.57	17.59	13.78
Merged-chr7-127921722-3	chr7	127921613	127921813	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360699, intron 5 of 10)	intron (NM_001360699, intron 5 of 10)	8400.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	12.52	7.04	12.55	8.04	18.41	27.28	15.61	17.38	19.47	23.1	24.62	13.47
Merged-chr11-119034356-3	chr11	119034254	119034454	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	6559.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	35.13	43.26	14.26	18.1	20.05	54.25	10.96	14.78	36.39	22.59	23.62	15.98
Merged-chr19-46979696-3	chr19	46979501	46979701	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10034.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	2.42	2.77	7.99	10.86	13.09	6.9	7.97	15.64	11.41	9.54	12.56	10.34
Merged-chr12-82470765-3	chr12	82470658	82470858	+	897.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-146167.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	14.13	14.34	13.69	16.49	9.0	25.4	15.61	10.4	16.33	26.11	20.6	10.02
Merged-chrX-96314317-3	chrX	96314222	96314422	+	897.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172931, intron 9 of 10)	intron (NM_172931, intron 9 of 10)	-20884.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	14.94	2.26	25.67	36.2	16.36	16.31	46.84	45.48	8.26	15.06	45.73	10.65
Merged-chr6-128065521-1	chr6	128065421	128065621	+	897.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	78057.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	1.01	2.28	2.41	3.27	2.51	4.32	3.08	11.21	12.05	15.07	14.72
Merged-chr13-24407014-3	chr13	24406923	24407123	+	897.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 2 of 16)	MER21-int|LTR|ERVL	-8099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	11.71	7.55	13.12	13.27	18.41	24.77	11.96	19.74	16.92	19.58	28.64	15.04
Merged-chr11-119396201-2	chr11	119396101	119396301	+	897.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	5729.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	3.23	4.53	6.85	5.23	13.91	27.59	13.29	22.07	16.52	5.52	19.09	8.46
Merged-chr11-3142625-3	chr11	3142547	3142747	+	897.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 20 of 32)	intron (NM_030207, intron 20 of 32)	18626.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	23.82	24.65	22.25	16.49	33.14	28.54	25.91	12.39	4.13	26.11	14.07	9.08
Merged-chr3-105710184-1	chr3	105710084	105710284	+	897.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4726.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	4.04	1.01	1.14	0.4	11.86	12.54	8.3	18.25	4.52	6.53	6.03	9.71
Merged-chr8-115706909-2	chr8	115706813	115707013	+	897.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-19.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	10.5	10.31	9.13	17.29	9.41	5.33	13.62	12.81	16.52	18.08	18.59	24.75
Merged-chr7-96856100-2	chr7	96855997	96856197	+	897.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 24 of 32)	intron (NM_011858, intron 24 of 32)	-54548.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	17.77	6.79	23.39	10.86	11.86	8.78	9.3	17.44	7.28	1.51	1.51	3.13
Merged-chr11-5542869-3	chr11	5542771	5542971	+	897.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-654.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	16.56	14.84	18.83	13.27	20.86	19.13	5.98	5.66	27.73	19.58	18.59	12.53
Merged-chr9-99353128-3	chr9	99353018	99353218	+	897.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177775, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	5412.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	11.71	6.04	14.83	14.88	6.14	12.54	6.31	18.9	10.62	20.08	26.63	16.6
Merged-chr10-117281692-3	chr10	117281603	117281803	+	897.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	569.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	10.5	15.59	10.27	11.66	9.82	32.61	9.97	5.36	15.74	12.55	22.11	14.41
Merged-chr2-26380642-3	chr2	26380524	26380724	+	897.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172339)	promoter-TSS (NM_172339)	29.0	NM_172339	227644.0	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	16.96	11.57	12.55	8.85	14.32	20.07	11.29	11.78	16.13	12.55	23.62	12.22
Merged-chr1-183294820-3	chr1	183294696	183294896	+	897.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151660, exon 2 of 13)	non-coding (NR_151660, exon 2 of 13)	-2264.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	14.94	7.29	18.25	16.49	11.86	23.83	14.95	23.05	10.23	14.56	33.16	16.29
Merged-chr10-86883422-3	chr10	86883270	86883470	+	897.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 44 of 68)	B1_Mm|SINE|Alu	104365.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	8.88	8.55	15.4	12.47	7.36	11.92	16.94	12.48	8.26	6.53	8.54	8.14
Merged-chr13-93861479-3	chr13	93861396	93861596	+	897.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	70719.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	10.9	15.85	18.83	7.24	21.68	25.09	14.95	17.8	24.59	27.62	16.58	11.59
Merged-chr2-166457528-3	chr2	166457411	166457611	+	897.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015558, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	10060.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	44.01	18.11	26.81	16.09	14.73	11.29	6.98	10.77	17.51	10.04	12.56	7.52
Merged-chr9-99436552-3	chr9	99436440	99436640	+	897.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	172.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	20.59	16.35	10.84	20.11	20.05	12.86	16.94	15.14	19.28	10.54	21.1	14.41
Merged-chr7-80402239-3	chr7	80402138	80402338	+	897.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081454, intron 1 of 15)	CpG	574.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	17.77	10.56	11.41	8.45	10.64	12.54	11.63	14.16	20.65	25.11	24.62	15.35
Merged-chr5-140514121-3	chr5	140514015	140514215	+	897.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021528, intron 1 of 1)	B4A|SINE|B4	8506.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	10.09	12.83	22.82	10.86	15.96	15.37	7.64	18.03	14.75	16.57	24.62	20.99
Merged-chr2-133467939-3	chr2	133467832	133468032	+	897.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84227.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	11.31	6.04	15.97	13.67	18.41	15.05	19.6	19.46	19.67	18.08	35.17	9.71
Merged-chr8-41394575-1	chr8	41394475	41394675	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-19878.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	5.65	4.53	14.26	10.86	2.45	6.9	5.31	10.51	2.36	1.51	5.53	4.39
Merged-chr18-65497618-2	chr18	65497511	65497711	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66614.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	7.27	11.57	11.41	5.23	6.14	5.02	8.3	7.88	2.36	4.52	3.01	3.76
Merged-chr6-146207772-1	chr6	146207672	146207872	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	273650.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	2.42	0.5	3.42	4.02	3.27	2.82	6.98	6.98	0.59	0.0	4.52	1.25
Merged-chr13-24781326-3	chr13	24781240	24781440	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19403.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	5.65	4.53	12.55	12.47	4.09	1.57	8.64	8.89	15.34	7.03	15.58	3.45
Merged-chr15-39778287-2	chr15	39778185	39778385	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-18760.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	3.63	6.79	5.7	4.02	9.82	9.09	8.3	13.46	12.78	15.57	19.6	8.46
Merged-chr4-109059624-1	chr4	109059524	109059724	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146150, intron 27 of 30)	intron (NM_146150, intron 27 of 30)	41969.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	6.46	3.77	9.13	4.42	13.5	7.53	11.63	22.35	6.69	3.51	6.53	4.07
Merged-chr4-108623882-1	chr4	108623782	108623982	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177045, intron 3 of 24)	intron (NM_177045, intron 3 of 24)	3926.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	2.83	5.79	7.42	8.85	4.5	3.45	6.31	8.44	4.92	1.51	3.01	1.88
Merged-chr12-4190725-1	chr12	4190625	4190825	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	43240.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	3.23	1.51	2.85	8.45	8.59	2.51	10.3	14.13	7.28	0.0	4.52	5.64
Merged-chr9-13748293-1	chr9	13748193	13748393	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-888.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	10.09	6.04	1.14	7.64	4.5	11.6	5.65	7.65	4.13	4.52	10.05	4.07
Merged-chr2-35680501-2	chr2	35680402	35680602	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-11492.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	20.59	9.56	12.55	13.67	23.73	33.55	9.63	31.32	7.87	10.04	28.14	4.39
Merged-chr18-46273752-3	chr18	46273642	46273842	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	7108.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	9.29	9.81	10.27	16.49	7.77	11.92	6.98	20.83	47.99	18.58	52.76	28.82
Merged-chr2-171630398-1	chr2	171630298	171630498	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	332401.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	2.42	1.01	0.0	1.21	3.68	8.78	10.96	6.17	0.59	0.5	1.0	0.31
Merged-chr8-92855896-3	chr8	92855826	92856026	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	593.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	8.08	5.28	12.55	13.27	15.14	15.99	10.96	14.1	10.62	15.06	26.13	19.11
Merged-chr17-34279293-1	chr17	34279193	34279393	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	8478.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	5.65	19.87	14.83	8.04	0.82	0.0	0.66	0.62	4.52	2.01	2.01	0.31
Merged-chr7-83852261-2	chr7	83852189	83852389	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32052.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	1.62	5.53	8.56	2.82	2.05	1.57	7.31	7.15	6.69	5.02	2.01	5.33
Merged-chr18-79109995-1	chr18	79109895	79110095	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-604.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.23	4.02	2.28	4.02	8.59	3.14	11.96	9.98	3.74	3.01	3.01	3.76
Merged-chr2-118490831-3	chr2	118490719	118490919	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11123.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	8.88	11.32	12.55	4.42	14.73	9.09	4.98	9.95	20.06	21.09	32.16	25.69
Merged-chrX-102188883-2	chrX	102188804	102189004	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009094, intron 1 of 6)	intron (NM_009094, intron 1 of 6)	487.0	NM_009094	20102.0	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	12.92	6.04	7.99	13.27	15.55	13.17	10.3	16.57	13.96	11.55	20.1	5.01
Merged-chr18-18115560-1	chr18	18115460	18115660	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-534570.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.4	0.5	2.28	5.23	4.5	1.25	5.98	7.18	0.0	0.0	0.0	0.31
Merged-chr4-88763574-3	chr4	88763485	88763685	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	2811.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	73.09	86.02	90.13	102.16	11.45	5.96	4.65	9.67	35.01	32.13	41.2	26.31
Merged-chr16-57605584-2	chr16	57605473	57605673	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	1294.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	4.04	9.81	19.4	10.46	5.73	4.08	8.97	8.33	13.57	8.03	5.02	6.89
Merged-chr15-77343615-1	chr15	77343515	77343715	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36562.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	4.04	3.52	0.0	3.62	11.86	9.41	3.32	12.56	8.65	7.03	12.06	4.07
Merged-chr10-44494686-1	chr10	44494586	44494786	+	897.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35938.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.86	0.0	5.13	2.41	6.95	3.45	4.32	3.79	12.0	5.52	15.07	4.07
Merged-chrX-146947200-1	chrX	146947100	146947300	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15313.0	NM_008312	15560.0	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	3.23	4.28	10.27	8.04	5.32	5.02	8.3	10.54	7.47	4.02	6.03	2.51
Merged-chr1-161359553-1	chr1	161359453	161359653	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35885.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.02	1.26	3.42	7.24	7.77	2.51	8.3	13.77	1.97	6.03	3.52	3.76
Merged-chr11-101646271-2	chr11	101646195	101646395	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18346.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	13.5	11.29	11.63	5.16	14.16	9.54	13.57	5.01
Merged-chr9-40617869-1	chr9	40617769	40617969	+	897.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-68095.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.81	3.27	2.28	3.22	1.23	5.96	3.99	2.66	15.74	14.06	8.54	2.82
Merged-chr13-102887585-1	chr13	102887485	102887685	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	RSINE1|SINE|B4	127330.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	6.86	10.56	14.83	9.65	5.32	2.51	2.66	4.93	10.42	5.52	0.5	6.27
Merged-chr9-106891417-2	chr9	106891308	106891508	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029103, intron 1 of 3)	intron (NM_029103, intron 1 of 3)	530.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	12.52	8.55	2.28	8.45	2.05	19.76	10.3	9.36	16.13	11.05	16.08	16.92
Merged-chr2-66124369-4	chr2	66124187	66124387	+	896.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015736, intron 1 of 10)	CpG	506.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	9.29	7.55	9.13	6.44	7.36	4.7	19.6	14.89	6.49	13.56	7.03	13.78
Merged-chr4-124711079-3	chr4	124710995	124711195	+	896.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3766.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	12.52	7.8	19.4	6.84	18.41	16.93	10.96	11.78	13.77	13.05	12.56	10.34
Merged-chr4-141138007-3	chr4	141137894	141138094	+	896.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1802.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	21.0	10.56	21.11	19.31	28.23	34.49	11.29	8.38	20.06	36.15	25.12	17.86
Merged-chr5-146288248-3	chr5	146288186	146288386	+	896.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359991, intron 6 of 12)	intron (NM_001359991, intron 6 of 12)	57036.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	2.42	4.78	3.42	12.87	6.55	2.51	5.98	12.17	5.51	4.02	12.06	10.65
Merged-chr11-63098844-2	chr11	63098732	63098932	+	896.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30150.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.81	6.29	7.42	0.8	7.77	14.11	12.62	6.08	21.05	19.08	25.63	5.01
Merged-chr2-91950898-3	chr2	91950848	91951048	+	896.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-600.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	9.69	11.32	6.85	4.42	16.77	10.03	7.97	8.21	14.75	10.54	6.53	3.13
Merged-chr13-107056518-3	chr13	107056419	107056619	+	896.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	33949.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	14.54	15.85	12.55	6.44	19.64	21.64	5.31	11.94	26.75	15.57	19.6	9.71
Merged-chr18-9505204-3	chr18	9505055	9505255	+	896.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55001.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	8.08	6.54	6.85	12.47	35.59	20.38	14.62	30.59	20.85	7.03	16.58	17.54
Merged-chrX-106047412-3	chrX	106047335	106047535	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	Lx8b|LINE|L1	20211.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	14.94	8.05	2.85	5.63	14.32	15.05	13.95	8.61	15.14	19.58	14.07	8.46
Merged-chr13-44718443-3	chr13	44718348	44718548	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12326.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	14.54	14.34	33.66	19.71	13.5	11.6	9.3	14.16	13.77	14.56	23.62	11.28
Merged-chr17-34078271-1	chr17	34078171	34078371	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	12.11	15.59	16.54	12.87	4.91	3.14	2.99	1.93	2.75	4.52	4.02	3.13
Merged-chr12-112895970-3	chr12	112895873	112896073	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	24568.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	17.77	19.62	42.21	25.74	8.59	11.6	8.64	21.39	23.41	8.54	17.59	8.14
Merged-chr7-88097916-3	chr7	88097812	88098012	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 9 of 9)	intron (NM_001081414, intron 9 of 9)	-180173.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	9.29	6.79	14.83	14.08	16.36	21.01	6.98	20.41	20.26	27.11	20.6	11.28
Merged-chr1-135722302-3	chr1	135722181	135722381	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 1 of 5)	B4A|SINE|B4	2218.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	25.44	27.67	23.39	14.08	3.68	11.92	2.99	6.7	25.37	13.56	18.09	9.4
Merged-chr2-13574975-3	chr2	13574852	13575052	+	896.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011701, exon 1 of 9)	exon (NM_011701, exon 1 of 9)	641.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	7.27	11.07	10.27	13.27	20.05	13.17	10.96	5.52	13.96	12.05	20.1	14.1
Merged-chr13-104132677-3	chr13	104132487	104132687	+	896.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144838, intron 8 of 10)	intron (NM_144838, intron 8 of 10)	22846.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	6.46	3.27	6.85	7.24	2.45	4.39	6.64	8.05	6.1	3.01	9.04	6.27
Merged-chr3-88337573-1	chr3	88337473	88337673	+	896.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	1313.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.04	3.52	0.0	2.41	10.64	4.39	2.66	3.7	18.1	18.08	12.06	13.78
Merged-chr1-147010838-3	chr1	147010741	147010941	+	896.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	513154.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	16.96	19.62	13.69	7.24	12.27	39.82	18.93	7.12	29.5	19.58	37.18	8.14
Merged-chr1-157141263-3	chr1	157141179	157141379	+	896.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 17 of 17)	intron (NM_177644, intron 17 of 17)	-32599.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	7.27	9.06	7.99	17.29	38.05	37.94	48.16	40.09	25.77	26.61	20.1	13.16
Merged-chr9-89179600-3	chr9	89179521	89179721	+	896.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19652.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	17.77	18.61	11.41	8.45	15.96	18.5	14.62	6.84	17.11	12.05	13.06	2.19
Merged-chr14-55735305-3	chr14	55735199	55735399	+	896.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	10385.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	20.19	17.86	13.69	13.67	17.59	18.19	13.62	12.9	30.29	9.54	24.62	14.72
Merged-chr10-122807261-3	chr10	122807158	122807358	+	896.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	127943.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	11.71	18.61	10.27	26.95	20.05	15.05	13.95	20.3	26.36	16.57	11.05	16.29
Merged-chr11-113649527-4	chr11	113649433	113649633	+	896.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013581)	promoter-TSS (NM_013581)	4.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	13.33	5.28	10.84	9.25	17.18	15.37	7.31	12.79	14.55	30.13	16.08	14.72
Merged-chr3-69044909-3	chr3	69044843	69045043	+	896.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025863)	promoter-TSS (NM_025863)	-201.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	16.56	16.35	10.84	19.31	35.59	16.93	16.61	19.23	18.29	18.58	23.11	13.78
Merged-chr2-181599022-3	chr2	181598927	181599127	+	896.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172676, exon 1 of 5)	5' UTR (NM_172676, exon 1 of 5)	120.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	9.69	12.32	9.13	14.48	9.0	10.66	8.64	8.1	9.64	11.05	7.03	6.58
Merged-chr10-67049024-3	chr10	67048917	67049117	+	896.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43942.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	14.94	11.07	10.27	9.25	17.59	17.25	9.3	15.5	24.59	32.13	25.12	16.29
Merged-chr12-38767340-3	chr12	38767243	38767443	+	896.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-12739.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	12.11	17.36	15.97	8.45	11.86	35.43	25.91	22.57	21.44	15.06	17.59	9.4
Merged-chrX-35889561-3	chrX	35889465	35889665	+	896.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	733.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	14.13	11.57	11.41	10.86	11.05	14.42	7.31	10.99	12.39	8.03	19.09	3.45
Merged-chr11-3191724-10	chr11	3191652	3191852	+	896.707642	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 1 of 32)	RCHARR1|DNA|hAT-Charlie	1711.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	9.69	9.06	8.56	12.87	13.09	11.6	16.94	4.6	12.19	10.04	14.57	22.87
Merged-chr3-33844285-3	chr3	33844151	33844351	+	896.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026222)	promoter-TSS (NM_026222)	59.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	17.77	8.3	7.99	10.05	27.41	23.83	22.59	22.26	25.18	10.54	34.17	16.29
Merged-chr1-106395682-3	chr1	106395601	106395801	+	896.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150930.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	15.75	16.85	4.56	13.67	5.73	16.93	7.64	18.95	17.11	13.05	33.67	14.1
Merged-chr3-157297387-1	chr3	157297287	157297487	+	896.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039094, intron 6 of 6)	intron (NM_001039094, intron 6 of 6)	236703.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	2.42	6.54	1.71	4.83	1.64	4.39	1.66	3.39	21.64	11.05	38.19	16.29
Merged-chr7-101883282-1	chr7	101883182	101883382	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1957.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	5.25	2.77	7.42	6.44	4.91	9.09	10.63	9.17	17.7	3.51	6.53	3.45
Merged-chr6-24707865-1	chr6	24707765	24707965	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25380.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	3.23	3.77	6.28	4.42	9.0	12.54	23.25	32.8	5.11	3.01	9.04	0.94
Merged-chr11-44380802-3	chr11	44380650	44380850	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-19313.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.85	2.26	7.99	8.04	9.0	5.33	9.97	3.28	14.95	8.54	16.58	14.72
Merged-chr1-150372124-2	chr1	150372017	150372217	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145511, exon 12 of 14)	exon (NM_145511, exon 12 of 14)	-20721.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	10.9	5.79	13.69	15.28	15.55	19.13	10.63	25.91	1.18	0.0	3.52	1.88
Merged-chr7-96554443-2	chr7	96554350	96554550	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	-212486.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	11.31	6.04	14.83	14.88	14.32	2.82	13.29	11.07	5.51	5.02	4.52	6.89
Merged-chr8-61917828-1	chr8	61917728	61917928	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR18B|LTR|ERVK	-10259.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	3.23	3.27	1.14	2.01	4.5	4.39	5.65	7.12	6.29	7.03	3.52	4.07
Merged-chr17-57231710-3	chr17	57231597	57231797	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3561.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	19.79	18.11	17.11	6.03	15.55	18.19	10.96	4.37	32.26	15.06	4.02	8.77
Merged-chr4-54481888-1	chr4	54481788	54481988	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-466057.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.04	4.28	1.14	5.23	17.59	8.47	19.93	22.88	0.0	0.0	0.0	0.94
Merged-chrX-102481300-1	chrX	102481200	102481400	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313742, intron 4 of 7)	intron (NM_001313742, intron 4 of 7)	23858.0	NM_001313742	70315.0	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	2.42	5.53	5.7	22.93	5.32	8.47	8.64	10.32	7.47	5.52	24.12	4.39
Merged-chr6-146192094-1	chr6	146191994	146192194	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 46 of 56)	intron (NM_019923, intron 46 of 56)	257972.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.63	4.78	10.27	4.42	6.55	10.98	10.63	15.98	0.2	0.5	1.0	0.63
Merged-chr11-95852487-2	chr11	95852415	95852615	+	896.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6302.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	1.62	4.78	1.71	3.62	12.27	10.66	7.64	8.16	12.19	10.04	9.55	6.89
Merged-chr17-78201458-3	chr17	78201290	78201490	+	896.634949	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 1 of 16)	CpG	1142.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	12.92	13.08	9.7	16.09	9.82	8.47	17.27	13.99	9.83	17.07	12.56	16.92
Merged-chr3-52257982-3	chr3	52257887	52258087	+	896.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10350.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	18.57	11.32	9.7	6.44	16.36	47.66	11.96	17.78	20.06	13.56	15.58	4.39
Merged-chr1-180303780-3	chr1	180303647	180303847	+	896.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26729.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	13.33	16.35	9.13	3.22	12.27	19.76	11.96	5.55	36.98	46.19	45.73	9.08
Merged-chr2-71103480-1	chr2	71103380	71103580	+	896.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14574.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	1.21	2.01	3.42	0.8	12.27	7.21	12.62	12.9	6.69	8.54	2.01	5.64
Merged-chr7-81862140-1	chr7	81862040	81862240	+	896.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-547.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	2.02	4.02	14.26	8.04	13.5	10.35	6.31	11.44	4.13	10.54	8.54	6.58
Merged-chr3-79982554-3	chr3	79982449	79982649	+	896.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	96619.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	12.92	5.03	21.68	13.67	12.27	20.07	22.59	15.45	10.82	7.03	21.1	12.22
Merged-chr9-107291095-2	chr9	107290999	107291199	+	896.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	22.61	5.53	2.85	2.82	12.27	13.48	4.32	10.18	26.75	19.58	17.08	13.16
Merged-chr15-55121227-3	chr15	55121136	55121336	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7654.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	10.9	9.31	6.85	10.46	19.64	15.37	13.29	18.48	9.44	13.56	16.58	5.01
Merged-chr8-35433967-3	chr8	35433875	35434075	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58234.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	16.96	9.31	13.69	6.84	11.45	18.19	19.93	23.02	15.14	13.05	25.12	5.01
Merged-chr5-121450127-3	chr5	121450063	121450263	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	2311.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	24.23	27.17	9.7	12.47	11.45	26.03	11.63	6.62	22.62	20.59	21.61	26.0
Merged-chr10-21696875-3	chr10	21696772	21696972	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6027.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	13.33	8.8	13.69	4.83	12.68	3.45	8.3	10.6	17.9	5.02	18.59	13.16
Merged-chr9-116160233-3	chr9	116160131	116160331	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	15132.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	13.73	11.82	21.68	17.29	12.68	10.98	11.63	20.47	9.44	10.04	10.55	9.71
Merged-chr5-62763329-3	chr5	62763230	62763430	+	896.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	2847.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	15.34	9.31	22.82	35.39	9.0	10.03	10.3	22.4	20.46	11.55	24.12	15.98
Merged-chr10-17655791-4	chr10	17655793	17655993	+	896.5208130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67335.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.06	7.29	2.85	3.62	9.0	5.02	7.97	5.69	8.26	10.04	3.52	4.07
Merged-chr7-120206178-3	chr7	120206063	120206263	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026458, intron 1 of 30)	intron (NM_026458, intron 1 of 30)	2199.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	3.63	7.55	7.99	10.05	37.23	38.26	33.22	60.7	37.17	53.73	54.27	28.82
Merged-chr11-116019704-3	chr11	116019592	116019792	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4812.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	8.48	15.85	10.27	18.5	20.86	36.37	8.97	10.09	18.29	24.1	17.08	6.58
Merged-chr14-20885283-3	chr14	20885172	20885372	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44126.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	13.33	8.8	19.4	10.05	7.36	15.99	13.29	19.35	12.39	6.03	19.09	8.14
Merged-chr6-51532825-3	chr6	51532730	51532930	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	8570.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	18.98	11.32	15.4	2.82	13.91	28.54	4.32	7.91	14.95	13.56	9.04	6.27
Merged-chr15-89074185-3	chr15	89074088	89074288	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040417, exon 2 of 4)	non-coding (NR_040417, exon 2 of 4)	1666.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	16.56	5.53	20.54	4.83	6.55	13.17	2.66	6.2	14.36	8.54	13.06	4.39
Merged-chr4-155491691-3	chr4	155491591	155491791	+	896.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160017, intron 1 of 10)	CpG	330.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	12.92	21.63	11.41	7.64	13.09	15.99	20.93	4.15	23.8	20.08	13.57	18.17
Merged-chr2-58533541-3	chr2	58533409	58533609	+	896.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	27901.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	11.71	5.03	23.39	7.64	11.86	10.03	9.97	11.75	10.62	5.52	7.03	6.58
Merged-chr5-123133612-3	chr5	123133501	123133701	+	896.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-972.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	15.34	15.34	18.83	3.62	11.86	10.98	2.33	6.95	10.03	13.56	11.05	9.08
Merged-chr10-82647389-2	chr10	82647263	82647463	+	896.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011561, exon 8 of 10)	exon (NM_011561, exon 8 of 10)	17521.0	NR_037190	624784.0	Mm.284252	NR_037190		Gm9855	-	thymine DNA glycosylase pseudogene	pseudo	3.63	7.04	2.28	9.25	11.45	6.27	16.61	18.56	26.95	9.54	26.13	14.72
Merged-chr12-102391503-2	chr12	102391390	102391590	+	896.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161365)	TTS (NM_001161365)	48323.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.42	4.28	3.42	8.04	7.36	3.76	7.31	7.51	11.8	5.52	3.01	8.77
Merged-chr5-105685947-2	chr5	105685815	105686015	+	896.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-14054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.46	5.28	5.7	2.82	2.45	7.53	4.32	1.57	18.1	16.07	18.59	16.6
Merged-chr1-134304855-2	chr1	134304747	134304947	+	896.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	14843.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	1.62	1.01	0.0	0.0	19.23	12.23	8.64	25.26	12.19	12.05	21.61	11.9
Merged-chr11-24357586-1	chr11	24357486	24357686	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124323.0	NR_045857	71316.0	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	6.06	4.02	1.14	4.02	21.27	15.05	7.31	17.8	3.15	7.53	3.01	2.51
Merged-chr1-75398874-3	chr1	75398773	75398973	+	896.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085370, intron 4 of 38)	intron (NM_001085370, intron 4 of 38)	-1212.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	10.9	13.33	6.28	12.07	18.41	24.15	9.3	20.69	15.93	21.59	16.08	18.17
Merged-chr2-150869608-1	chr2	150869508	150869708	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-27038.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.83	1.51	1.71	4.42	8.59	0.94	10.96	14.61	3.93	2.51	2.01	2.19
Merged-chr6-129209303-3	chr6	129209220	129209420	+	896.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28705.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	11.71	13.58	24.53	18.1	7.77	2.82	8.64	10.71	22.03	4.52	13.06	13.78
Merged-chr2-144695363-1	chr2	144695263	144695463	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	95410.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	4.85	1.26	7.99	6.44	9.82	4.39	23.58	16.46	2.36	1.51	1.51	1.25
Merged-chr13-64181137-1	chr13	64181037	64181237	+	896.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	19271.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	2.83	4.53	1.14	1.61	4.91	9.41	2.66	4.99	10.62	12.55	18.59	12.84
Merged-chr12-73898922-1	chr12	73898822	73899022	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2402.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	1.62	1.76	0.0	1.61	17.18	9.09	12.62	16.79	7.47	6.03	8.04	11.28
Merged-chr1-191277842-3	chr1	191277721	191277921	+	896.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40297.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	14.54	7.04	11.98	10.46	16.77	10.98	9.97	9.64	21.64	18.58	16.08	12.22
Merged-chr11-100757749-3	chr11	100757659	100757859	+	896.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081194, exon 2 of 17)	exon (NM_001081194, exon 2 of 17)	2019.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	12.52	13.58	9.7	6.03	32.32	51.74	18.93	8.55	68.25	74.31	78.89	28.19
Merged-chr7-97171898-3	chr7	97171806	97172006	+	896.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90155.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	18.17	8.3	21.68	16.09	11.05	20.07	9.97	23.69	23.21	27.11	17.08	15.66
Merged-chr18-4325792-2	chr18	4325686	4325886	+	896.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27167.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.25	8.05	7.99	6.84	5.73	24.46	17.61	5.83	20.06	8.54	27.13	6.27
Merged-chr11-120932856-3	chr11	120932770	120932970	+	896.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	2.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	23.42	15.59	10.27	13.67	11.05	23.52	4.32	6.11	28.13	22.59	15.58	19.42
Merged-chr11-118230145-3	chr11	118230026	118230226	+	896.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17384.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	10.09	5.28	10.27	18.9	11.45	11.6	35.21	31.93	12.39	5.52	15.07	13.47
Merged-chr7-18873522-2	chr7	18873433	18873633	+	896.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11157.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	6.86	5.28	7.42	14.48	12.68	13.17	5.98	15.34	17.9	29.12	18.09	23.49
Merged-chr6-86397782-3	chr6	86397681	86397881	+	896.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	-631.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	9.69	10.31	18.25	8.45	13.5	21.95	13.62	17.66	16.13	21.09	18.09	14.41
Merged-chr7-4924171-3	chr7	4924090	4924290	+	896.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1310.0	NM_001358883	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	8.48	13.83	18.83	6.03	11.86	10.35	10.96	5.13	11.41	9.54	9.55	9.71
Merged-chr2-84296542-3	chr2	84296455	84296655	+	896.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128711.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	13.73	15.59	14.83	9.65	18.41	21.95	7.97	16.01	23.01	20.59	16.08	7.21
Merged-chr10-93960227-1	chr10	93960127	93960327	+	896.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3636.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	1.62	4.02	12.55	5.63	12.27	9.72	11.29	20.36	9.83	6.03	2.51	2.82
Merged-chr8-115530180-3	chr8	115530101	115530301	+	896.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176693.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	16.15	9.31	11.98	18.9	20.46	10.66	16.94	21.17	15.14	16.07	13.57	10.02
Merged-chr19-33102234-1	chr19	33102134	33102334	+	896.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54878.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	4.44	1.51	1.14	5.63	9.41	14.42	10.63	19.6	3.15	4.02	3.52	4.07
Merged-chr8-26888285-3	chr8	26888187	26888387	+	896.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-63864.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	18.57	11.82	10.27	15.69	27.0	21.95	15.28	33.5	13.18	15.57	17.08	10.34
Merged-chr3-37758953-2	chr3	37758820	37759020	+	896.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34560.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	13.33	13.08	13.12	2.82	10.64	10.35	1.33	2.61	5.9	20.08	5.02	0.94
Merged-chr7-100500882-3	chr7	100500704	100500904	+	896.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7446.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	14.13	7.55	19.4	4.02	13.09	8.15	6.64	14.13	6.88	9.54	18.59	5.64
Merged-chrX-167206033-3	chrX	167205937	167206137	+	896.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3181.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	8.48	10.06	10.27	11.66	18.0	26.97	19.6	16.43	16.92	24.1	20.6	7.83
Merged-chr1-182369659-3	chr1	182369575	182369775	+	896.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28069.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	12.11	9.81	10.27	14.08	18.82	15.99	13.62	24.2	14.16	10.54	29.14	17.23
Merged-chr10-81401354-3	chr10	81401216	81401416	+	896.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	8252.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	9.29	18.61	7.99	9.65	23.32	44.21	17.27	29.47	27.93	29.12	23.62	20.68
Merged-chr11-86357447-3	chr11	86357361	86357561	+	896.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	64.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	13.73	15.09	14.26	10.86	14.73	13.48	12.29	10.57	12.59	16.57	13.57	9.08
Merged-chr4-139587540-3	chr4	139587446	139587646	+	896.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	12826.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	16.56	10.06	20.54	8.04	5.32	1.57	5.65	7.35	20.46	13.05	32.16	27.88
Merged-chr1-138153259-3	chr1	138153075	138153275	+	896.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	21951.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	8.48	7.29	7.99	10.86	7.36	9.72	8.3	11.8	7.67	7.53	7.03	3.45
Merged-chr1-181234506-3	chr1	181234419	181234619	+	896.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22541.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	12.52	8.55	8.56	9.25	24.96	18.19	18.27	17.05	19.28	22.59	24.62	10.65
Merged-chr10-21651655-3	chr10	21651549	21651749	+	896.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39196.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	3.23	7.04	13.69	17.7	11.45	10.66	11.63	23.22	11.01	4.02	20.1	9.4
Merged-chr1-185238686-3	chr1	185238576	185238776	+	896.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 7 of 34)	intron (NM_001163754, intron 7 of 34)	-4250.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	11.31	10.31	15.4	30.57	15.55	19.76	19.93	34.35	12.59	12.55	10.55	9.71
Merged-chr17-45597258-3	chr17	45597150	45597350	+	896.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	-1348.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	18.57	9.81	8.56	9.65	11.45	14.74	12.95	5.78	12.78	21.59	27.13	4.7
Merged-chr2-155751432-3	chr2	155751314	155751514	+	896.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011171, exon 1 of 4)	exon (NM_011171, exon 1 of 4)	197.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	4.44	10.56	9.13	14.88	6.95	9.41	5.65	6.14	12.0	12.05	5.53	5.95
Merged-chr4-46497695-3	chr4	46497591	46497791	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	8362.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	9.69	10.06	1.71	13.67	9.41	4.39	7.97	8.97	21.64	20.08	4.02	10.34
Merged-chr3-81101473-1	chr3	81101373	81101573	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	B1F|SINE|Alu	65057.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.25	2.01	12.55	2.82	14.73	6.27	6.98	14.44	9.24	2.51	6.53	1.57
Merged-chr16-35765538-3	chr16	35765453	35765653	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MER57-int|LTR|ERV1	3803.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	52.49	32.95	50.77	51.48	58.91	43.9	59.13	81.73	17.9	8.54	12.06	6.58
Merged-chr3-10213442-1	chr3	10213342	10213542	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4826.0	NM_024406	11770.0	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15	fatty acid binding protein 4, adipocyte	protein-coding	2.83	3.27	1.14	8.45	3.68	3.14	3.99	10.35	4.92	4.02	7.03	3.13
Merged-chr9-119977912-3	chr9	119977815	119978015	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	5108.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	19.79	25.91	5.7	4.42	10.64	37.32	2.99	2.78	31.47	27.62	3.52	4.7
Merged-chr13-58996648-3	chr13	58996565	58996765	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	188968.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.27	11.82	28.52	14.48	10.64	11.29	13.62	14.86	9.05	7.03	16.08	12.53
Merged-chr11-11812181-3	chr11	11812068	11812268	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3206.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.4	14.34	13.69	11.26	12.68	8.15	6.64	10.01	14.55	11.55	23.11	13.78
Merged-chr5-129959283-1	chr5	129959183	129959383	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	(TCC)n|Simple_repeat|Simple_repeat	17174.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	3.23	4.53	5.7	0.8	11.45	2.82	1.66	8.94	4.92	7.53	14.57	3.76
Merged-chr13-110753961-1	chr13	110753861	110754061	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149538.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	0.25	4.56	2.41	11.05	10.35	11.96	18.36	0.39	0.5	2.51	0.0
Merged-chr6-17811241-3	chr6	17811152	17811352	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62082.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.06	3.52	18.83	11.26	16.77	18.19	13.95	23.89	14.36	17.57	33.67	7.21
Merged-chr12-32017771-2	chr12	32017670	32017870	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	43509.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	2.83	3.52	13.12	6.03	7.77	5.96	10.3	7.93	18.88	28.62	33.67	21.62
Merged-chr9-40733425-2	chr9	40733335	40733535	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	MER31B|LTR|ERV1	47471.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	14.94	8.3	12.55	7.64	20.86	20.7	17.27	17.64	0.59	3.01	1.0	0.0
Merged-chr2-132204004-1	chr2	132203904	132204104	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43784.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	2.42	3.02	10.84	7.64	10.64	9.09	5.65	8.75	2.56	1.0	7.54	4.07
Merged-chr4-75264439-1	chr4	75264339	75264539	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	13853.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.04	0.75	1.14	3.22	9.0	9.41	2.66	8.27	6.29	2.01	6.53	1.57
Merged-chr5-107853956-1	chr5	107853856	107854056	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	ORR1D1-int|LTR|ERVL-MaLR	21151.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	5.65	2.77	3.42	9.25	5.73	3.45	7.97	7.74	7.08	7.53	2.01	4.7
Merged-chr7-16816773-3	chr7	16816679	16816879	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-47.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	2.83	12.83	10.27	7.64	11.86	13.8	10.63	12.08	12.39	18.08	17.08	12.22
Merged-chr3-137919159-1	chr3	137919059	137919259	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019920, intron 2 of 6)	intron (NM_019920, intron 2 of 6)	604.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.65	2.01	0.0	2.41	7.77	12.86	6.98	5.78	7.28	6.53	5.53	6.27
Merged-chr2-165855777-3	chr2	165855680	165855880	+	895.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	2393.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	22.21	6.04	13.69	15.69	21.27	10.03	9.63	12.45	22.42	23.1	19.6	13.78
Merged-chr19-25052446-3	chr19	25052329	25052529	+	895.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	52900.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	11.31	8.3	18.83	11.66	14.73	24.46	11.63	18.53	20.65	10.04	16.08	17.23
Merged-chr13-64274750-5	chr13	64274644	64274844	+	895.904785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172587, exon 1 of 14)	exon (NM_172587, exon 1 of 14)	244.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	5.25	6.79	3.42	2.82	12.27	14.74	19.27	15.48	11.21	12.05	12.06	12.53
Merged-chr14-121378436-3	chr14	121378303	121378503	+	895.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	CpG	827.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	8.88	11.32	7.99	11.26	17.18	12.23	13.95	11.64	20.46	13.56	34.17	9.4
Merged-chr16-92038155-3	chr16	92038050	92038250	+	895.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20172.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	20.59	17.36	5.13	6.84	18.0	20.38	22.59	20.13	22.03	6.53	8.04	10.02
Merged-chr14-10129838-2	chr14	10129731	10129931	+	895.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	245736.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	1.62	3.77	10.84	4.02	8.59	8.78	9.3	15.76	17.31	7.03	16.58	7.52
Merged-chr3-146120183-2	chr3	146120121	146120321	+	895.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1570.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	6.86	14.84	6.85	18.9	6.55	6.27	6.98	9.0	5.51	5.02	1.51	1.25
Merged-chr6-136660051-2	chr6	136659961	136660161	+	895.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	1832.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	14.54	4.53	6.28	6.44	9.41	7.53	4.32	7.82	19.67	20.59	12.56	17.54
Merged-chr6-34059952-3	chr6	34059844	34060044	+	895.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028886, intron 6 of 19)	intron (NM_028886, intron 6 of 19)	30496.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	17.77	20.88	39.93	16.49	6.14	15.05	14.28	14.22	13.57	10.54	20.1	12.22
Merged-chr8-126901291-3	chr8	126901187	126901387	+	895.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44634.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	10.5	16.6	13.69	17.29	21.27	20.7	14.95	12.22	13.57	23.6	9.04	21.93
Merged-chr11-60106088-7	chr11	60106047	60106247	+	895.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	CpG	1134.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	8.08	6.54	6.85	14.48	6.14	15.05	5.65	9.53	17.7	16.07	10.05	10.96
Merged-chr12-40221706-3	chr12	40221609	40221809	+	895.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	1102.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	16.96	11.32	17.11	14.48	15.96	19.13	9.97	18.59	16.33	11.05	17.08	13.78
Merged-chr9-22367670-3	chr9	22367568	22367768	+	895.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028390, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	21538.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	12.52	9.81	12.55	6.44	27.0	24.46	20.59	32.55	25.57	24.1	31.15	15.35
Merged-chr5-138265165-3	chr5	138265075	138265275	+	895.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347507, exon 4 of 4)	3' UTR (NM_001347507, exon 4 of 4)	-1123.0	NM_153161	231807.0	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	18.57	17.61	11.41	22.52	6.55	11.6	8.3	13.07	12.59	18.08	9.55	4.39
Merged-chr8-14642625-3	chr8	14642534	14642734	+	895.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-245902.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.27	7.8	17.68	10.05	23.32	15.99	19.6	23.36	51.53	29.62	41.2	26.0
Merged-chr1-88700821-6	chr1	88700720	88700920	+	895.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	1371.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.65	8.05	10.84	12.07	7.36	9.09	6.64	7.4	11.41	18.08	16.08	10.02
Merged-chr6-94163274-1	chr6	94163174	94163374	+	895.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	74168.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	1.21	0.75	0.0	3.62	3.68	8.47	16.61	13.35	0.98	1.51	3.52	1.25
Merged-chr5-74729683-1	chr5	74729583	74729783	+	895.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26780.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	2.01	2.85	0.0	11.86	6.59	11.63	10.88	1.97	0.5	0.0	0.31
Merged-chr9-44482709-3	chr9	44482624	44482824	+	895.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-101.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	18.98	15.59	15.97	10.86	17.59	22.26	11.29	12.08	11.8	23.6	23.62	7.21
Merged-chr11-43349652-2	chr11	43349543	43349743	+	895.7333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24818.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	10.5	4.78	1.14	3.22	10.23	19.13	4.65	8.5	16.13	26.61	17.08	8.46
Merged-chr5-66079540-3	chr5	66079441	66079641	+	895.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18638.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	12.52	8.55	13.69	12.07	27.0	27.59	9.3	16.96	26.36	26.11	27.13	13.16
Merged-chr4-129785381-3	chr4	129785265	129785465	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35114.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	12.52	14.34	13.69	8.85	12.68	12.86	7.97	15.48	28.32	28.12	20.6	19.42
Merged-chr15-85132004-3	chr15	85131913	85132113	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080470)	promoter-TSS (NM_080470)	-56.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	11.31	9.81	9.13	11.26	29.05	15.99	19.6	11.78	25.18	20.08	17.59	19.74
Merged-chr2-33131826-3	chr2	33131762	33131962	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355201)	promoter-TSS (NM_001355201)	-426.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	21.4	13.83	8.56	20.51	3.68	12.54	4.98	7.51	8.85	8.54	13.57	5.64
Merged-chr6-116719108-3	chr6	116719000	116719200	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2342.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	11.31	11.07	10.27	14.48	17.18	9.72	12.62	14.64	20.85	14.06	39.19	16.92
Merged-chr10-7936718-3	chr10	7936625	7936825	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	16340.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	12.11	12.83	12.55	11.26	18.41	19.76	8.64	17.94	22.62	7.53	10.55	8.14
Merged-chr1-75190074-3	chr1	75189982	75190182	+	895.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003917, intron 4 of 15)	intron (NM_001003917, intron 4 of 15)	1928.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	10.09	9.06	12.55	5.23	16.36	21.01	11.96	14.19	12.59	20.08	13.06	10.34
Merged-chr8-25537886-3	chr8	25537762	25537962	+	895.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	18221.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	10.09	5.79	21.68	15.28	18.82	10.98	24.91	29.1	19.28	13.56	32.16	22.56
Merged-chr14-75075423-3	chr14	75075323	75075523	+	895.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	55460.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	15.75	13.08	12.55	10.86	6.55	22.58	13.62	14.3	19.47	10.54	25.12	13.78
Merged-chr14-73382921-3	chr14	73382814	73383014	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	2375.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	11.71	7.8	10.27	17.7	16.36	8.78	17.27	24.62	20.85	13.05	19.09	10.02
Merged-chr8-120634547-3	chr8	120634418	120634618	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197988)	promoter-TSS (NM_197988)	-136.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	17.77	7.04	15.97	2.41	12.68	13.8	13.95	10.43	9.44	6.03	7.54	9.71
Merged-chr1-16110937-1	chr1	16110837	16111037	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	5055.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.04	1.76	0.0	1.61	6.95	7.84	11.63	10.18	6.49	5.52	5.53	3.45
Merged-chr3-96570957-1	chr3	96570857	96571057	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4156.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	12.92	6.04	3.42	1.61	2.45	9.41	8.64	9.36	6.49	2.01	8.04	6.27
Merged-chr5-122268200-3	chr5	122268085	122268285	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3725.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	15.34	15.09	13.69	12.07	13.09	11.6	11.96	16.01	16.52	23.1	12.06	15.66
Merged-chr9-32716246-1	chr9	32716146	32716346	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	20204.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.23	3.27	2.28	8.04	2.05	7.84	7.97	11.21	5.9	4.52	12.06	1.57
Merged-chr16-4316265-3	chr16	4316167	4316367	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 3 of 10)	intron (NM_009624, intron 3 of 10)	87038.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	14.13	9.06	10.84	22.12	11.05	14.42	7.97	15.0	23.8	16.57	15.58	15.04
Merged-chr18-32184246-3	chr18	32184136	32184336	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	Lx9|LINE|L1	21147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	8.48	13.58	28.52	14.08	14.32	15.05	20.26	25.18	14.55	10.54	15.07	6.27
Merged-chr8-34065460-1	chr8	34065360	34065560	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	42354.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	4.04	7.55	9.13	14.48	10.64	13.17	11.29	23.61	5.9	3.51	9.55	1.57
Merged-chr15-59860978-2	chr15	59860879	59861079	+	895.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66020.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.42	6.29	3.42	0.8	11.45	12.86	13.29	7.63	12.39	8.03	13.57	6.27
Merged-chr11-83039364-2	chr11	83039253	83039453	+	895.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355513, intron 1 of 5)	B2_Mm2|SINE|B2	689.0	NR_073523	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	2.42	2.26	2.28	2.41	19.64	25.09	7.64	9.31	24.39	31.13	22.61	13.16
Merged-chr1-43445894-7	chr1	43445745	43445945	+	895.619019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	94.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.44	8.05	6.28	7.24	12.68	5.33	11.63	5.75	17.7	13.05	24.62	8.77
Merged-chr5-123662241-3	chr5	123662137	123662337	+	895.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	22124.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	8.08	7.04	15.4	13.67	22.5	23.2	17.61	19.57	13.57	13.56	24.62	18.8
Merged-chr13-85290866-3	chr13	85290757	85290957	+	895.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1371.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	14.94	8.8	14.83	4.02	9.41	12.86	8.97	12.48	17.31	15.57	17.59	13.16
Merged-chr6-122340571-2	chr6	122340458	122340658	+	895.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-331.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	8.08	10.56	6.28	4.83	17.59	9.72	7.31	18.76	21.24	14.56	14.57	20.36
Merged-chr12-35338369-2	chr12	35338263	35338463	+	895.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143466.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	5.65	0.25	3.42	7.64	8.18	5.64	3.32	10.09	16.92	18.08	24.62	10.02
Merged-chr10-8059743-3	chr10	8059632	8059832	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103609.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	10.9	9.31	28.52	32.58	39.27	23.83	35.87	52.91	11.8	16.07	32.16	21.93
Merged-chr7-12910336-3	chr7	12910233	12910433	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11978.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	12.52	9.81	11.41	12.87	21.27	10.03	11.96	21.73	27.54	21.59	38.69	17.86
Merged-chr2-132121290-3	chr2	132121186	132121386	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	B3|SINE|B2	23822.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	12.92	11.32	11.41	14.88	5.32	21.32	12.29	6.53	16.13	8.03	13.06	5.33
Merged-chr2-14324846-3	chr2	14324732	14324932	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 25 of 29)	RLTR16B_MM|LTR|ERVK	-63566.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	19.38	21.13	11.41	13.27	19.23	20.7	8.64	12.87	16.72	18.08	21.1	11.59
Merged-chr6-134090504-3	chr6	134090411	134090611	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	54811.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.52	7.55	15.4	6.44	15.96	9.72	8.3	22.91	25.18	15.06	41.2	11.59
Merged-chr16-90885566-3	chr16	90885460	90885660	+	895.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	49289.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	12.92	10.56	18.25	14.48	16.77	24.15	16.94	20.58	18.69	11.55	15.58	15.66
Merged-chr12-73632949-3	chr12	73632847	73633047	+	895.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	48151.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	27.86	8.8	11.98	13.67	18.41	26.03	17.27	27.08	14.95	10.54	18.09	15.35
Merged-chr6-6216596-1	chr6	6216496	6216696	+	895.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177572, intron 1 of 17)	intron (NM_001177572, intron 1 of 17)	577.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	7.67	2.26	4.56	3.22	22.5	11.29	12.62	15.39	7.47	12.05	5.53	7.21
Merged-chr9-102625664-2	chr9	102625576	102625776	+	895.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	448.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	11.71	16.1	11.98	16.49	10.23	12.54	11.29	10.79	20.26	24.1	10.55	15.66
Merged-chr19-34588362-2	chr19	34588299	34588499	+	895.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010501, exon 2 of 2)	3' UTR (NM_010501, exon 2 of 2)	4870.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	2.42	3.52	7.99	3.62	6.95	1.57	8.3	5.86	9.44	8.03	6.53	10.02
Merged-chr10-117839111-3	chr10	117839023	117839223	+	895.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B3|SINE|B2	6851.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	10.9	17.1	8.56	4.02	17.18	29.79	16.94	9.93	22.62	15.57	29.14	10.65
Merged-chr18-44759832-2	chr18	44759733	44759933	+	895.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	52349.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.42	5.53	9.7	5.63	33.96	24.15	18.6	41.83	25.37	17.57	17.59	8.46
Merged-chr13-73765418-3	chr13	73765336	73765536	+	895.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	1739.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	12.92	11.07	31.38	15.69	19.23	9.72	6.98	27.9	13.18	12.05	20.1	12.53
Merged-chr13-22015884-3	chr13	22015787	22015987	+	895.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6146.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	34.73	39.24	36.51	24.94	26.59	29.16	23.58	9.73	12.19	14.56	12.56	8.14
Merged-chr4-141077898-3	chr4	141077777	141077977	+	895.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149724, intron 1 of 8)	CpG	480.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	17.36	14.59	18.25	9.25	26.18	12.23	13.95	6.95	25.57	17.57	14.07	9.4
Merged-chr14-31376125-3	chr14	31376037	31376237	+	895.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39499.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	14.94	12.58	9.13	8.85	11.45	6.59	6.64	14.07	16.13	9.54	16.08	9.08
Merged-chr7-128738181-3	chr7	128738085	128738285	+	895.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2244.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	21.0	12.83	13.69	18.9	13.5	11.6	12.62	17.27	14.55	13.56	18.09	24.43
Merged-chr19-4098542-3	chr19	4098435	4098635	+	895.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026373, exon 4 of 4)	exon (NM_026373, exon 4 of 4)	1184.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	12.11	4.28	10.27	7.24	15.55	7.84	14.28	13.63	15.14	9.54	10.05	8.77
Merged-chr16-22438789-2	chr16	22438645	22438845	+	895.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358428)	promoter-TSS (NM_001358428)	-377.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	11.71	6.79	10.84	18.5	4.91	6.27	1.66	9.76	7.08	3.51	6.03	13.78
Merged-chr2-173535472-2	chr2	173535391	173535591	+	895.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	12899.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	10.09	2.77	6.85	3.22	9.82	6.59	12.62	13.74	15.54	13.56	16.08	17.23
Merged-chr9-111053627-1	chr9	111053527	111053727	+	895.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	3617.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	10.09	13.33	1.71	2.82	6.55	16.62	1.99	7.32	4.72	8.03	1.51	2.19
Merged-chr4-6384745-3	chr4	6384642	6384842	+	895.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016807, intron 4 of 8)	intron (NM_016807, intron 4 of 8)	19062.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	11.71	9.31	14.83	12.87	29.46	17.25	26.57	28.15	24.0	19.58	25.63	13.16
Merged-chr19-10709519-3	chr19	10709402	10709602	+	895.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	8734.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	17.77	13.83	9.13	13.67	16.36	15.37	11.63	10.4	17.31	10.04	21.61	10.65
Merged-chr19-21064691-2	chr19	21064616	21064816	+	895.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39994.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	13.33	11.57	9.7	12.07	4.09	13.8	2.66	2.64	23.6	20.08	11.05	6.27
Merged-chr1-134063484-3	chr1	134063374	134063574	+	895.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15681.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	11.71	11.57	11.98	6.84	16.36	16.93	14.95	21.9	14.55	11.05	18.09	14.1
Merged-chr4-43218165-3	chr4	43218054	43218254	+	895.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 11 of 39)	intron (NM_001081413, intron 11 of 39)	-49005.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	15.34	14.59	14.83	27.35	10.23	15.37	10.96	22.74	17.11	10.04	15.58	9.4
Merged-chr8-33619052-1	chr8	33618952	33619152	+	895.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178648)	TTS (NM_178648)	19431.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.81	4.02	4.56	2.41	4.09	1.57	4.65	12.34	13.18	13.56	16.58	5.33
Merged-chr2-117327117-3	chr2	117327022	117327222	+	895.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	15755.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	12.92	8.05	17.11	9.65	15.96	13.17	6.98	13.4	19.28	19.58	16.58	15.35
Merged-chr2-181409811-2	chr2	181409713	181409913	+	895.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028125)	TTS (NM_028125)	14575.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	1.21	5.03	11.98	4.42	14.32	11.29	7.64	15.03	17.7	16.57	27.64	10.34
Merged-chr18-23753059-3	chr18	23752996	23753196	+	895.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126066)	promoter-TSS (NR_126066)	-629.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	10.5	10.31	3.99	10.86	9.82	8.78	6.64	7.6	12.78	18.58	9.55	12.22
Merged-chr8-109779440-4	chr8	109779292	109779492	+	895.2958369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	809.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	8.48	9.56	11.41	14.48	8.18	12.23	11.63	4.91	18.88	14.56	18.59	13.47
Merged-chr8-128111344-3	chr8	128111255	128111455	+	895.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166870.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	13.73	18.11	23.39	19.71	10.64	9.72	13.29	10.6	29.31	18.08	25.63	13.47
Merged-chr13-101656011-3	chr13	101655929	101656129	+	895.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	36601.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	19.38	14.84	15.97	10.86	9.0	32.3	23.25	4.68	32.45	29.62	27.13	22.87
Merged-chr2-70503621-1	chr2	70503521	70503721	+	895.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040496, intron 1 of 2)	intron (NR_040496, intron 1 of 2)	-5198.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	4.85	4.02	4.56	7.64	10.64	6.9	11.96	8.8	5.51	7.53	6.03	4.07
Merged-chr18-68131427-3	chr18	68131343	68131543	+	895.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-96503.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.85	8.8	10.27	20.11	13.09	11.92	26.91	23.13	12.19	20.08	31.66	9.08
Merged-chr9-57565797-3	chr9	57565685	57565885	+	895.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	4841.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	12.52	11.07	21.68	15.28	23.73	18.81	10.63	16.51	10.23	16.57	20.6	15.35
Merged-chr7-135705311-3	chr7	135705205	135705405	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 7 of 13)	intron (NM_001081117, intron 7 of 13)	11074.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	7.67	18.36	18.25	4.42	15.14	20.38	11.29	6.31	14.55	13.56	15.07	9.71
Merged-chr3-127289038-1	chr3	127288938	127289138	+	895.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	RMER5|LTR|ERV1	120020.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.4	2.52	6.85	6.03	0.0	2.82	1.99	1.57	12.78	11.55	19.09	11.9
Merged-chr19-10820304-2	chr19	10820193	10820393	+	895.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	L1MC4|LINE|L1	9765.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.8	10.23	10.98	8.64	9.48	12.98	13.56	16.08	14.1
Merged-chr19-17334999-3	chr19	17334898	17335098	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	4507.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.46	11.32	5.13	14.88	10.23	5.64	6.31	9.76	25.37	23.6	23.62	11.59
Merged-chr1-152790362-3	chr1	152790284	152790484	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-9769.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.65	17.36	11.41	11.26	17.59	23.83	13.95	17.52	25.96	35.15	16.58	18.8
Merged-chr10-51456613-3	chr10	51456510	51456710	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24002.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	12.11	11.32	19.4	12.07	23.32	16.62	14.62	27.5	25.96	9.54	20.1	11.28
Merged-chr2-22722015-3	chr2	22721913	22722113	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52314.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	13.73	13.83	4.56	5.63	10.23	19.44	5.31	10.71	21.05	12.55	19.6	9.71
Merged-chr6-128872475-2	chr6	128872375	128872575	+	895.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	BGLII_B|LTR|ERVK	-15112.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	23.02	10.06	6.28	6.44	11.05	18.81	3.65	6.95	6.49	8.54	7.54	5.01
Merged-chr4-55508963-2	chr4	55508926	55509126	+	895.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23449.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	14.13	4.02	0.57	4.42	2.05	15.68	5.31	14.22	5.51	3.51	5.53	2.51
Merged-chr16-84606764-2	chr16	84606662	84606862	+	895.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73027.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	20.59	16.35	11.41	6.84	0.82	6.9	1.99	1.32	26.16	19.08	18.09	5.01
Merged-chr1-75209062-3	chr1	75208959	75209159	+	895.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029010, exon 3 of 17)	exon (NM_029010, exon 3 of 17)	1719.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	15.34	9.56	11.41	6.44	29.86	23.2	9.63	19.91	24.19	28.62	39.19	9.71
Merged-chr8-61921218-3	chr8	61921106	61921306	+	895.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6881.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	8.88	7.8	15.4	16.89	18.82	15.37	17.27	26.94	31.67	17.57	26.63	15.35
Merged-chr16-90259197-3	chr16	90259089	90259289	+	895.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	25297.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	29.88	14.09	12.55	12.47	11.45	22.58	10.63	16.21	24.78	15.57	12.56	16.29
Merged-chr10-8466126-3	chr10	8466041	8466241	+	895.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	52684.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	14.13	6.79	13.12	10.46	13.5	16.31	2.66	12.87	13.96	3.51	19.09	14.1
Merged-chr3-79525227-3	chr3	79525129	79525329	+	895.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	42450.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.85	2.77	12.55	11.26	11.86	17.87	13.62	51.06	12.39	8.54	22.11	18.17
Merged-chr15-6568016-3	chr15	6567905	6568105	+	895.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11842.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	10.5	6.79	22.82	11.66	29.05	20.7	26.57	29.38	30.29	27.62	35.68	12.53
Merged-chr9-119156983-2	chr9	119156827	119157027	+	895.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146230, exon 1 of 12)	exon (NM_146230, exon 1 of 12)	166.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	12.52	11.07	4.56	8.45	8.59	9.09	12.29	10.68	5.9	7.53	6.53	5.64
Merged-chr19-58132095-2	chr19	58131997	58132197	+	895.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181415, exon 29 of 29)	3' UTR (NM_181415, exon 29 of 29)	80930.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	6.46	7.04	19.4	15.28	19.64	11.92	14.95	26.02	1.18	1.0	0.0	0.0
Merged-chr10-19031159-3	chr10	19031063	19031263	+	895.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15753.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	43.21	43.01	12.55	11.66	47.87	101.28	17.94	9.06	73.17	66.78	35.68	11.28
Merged-chr12-75415178-3	chr12	75415087	75415287	+	895.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	1594.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	10.9	9.31	21.11	9.65	11.05	13.17	12.29	12.76	11.21	15.06	23.11	15.98
Merged-chr5-24684857-3	chr5	24684725	24684925	+	895.055542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-990.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	2.42	5.28	0.57	7.24	9.41	8.78	7.31	6.45	9.24	10.04	3.01	3.76
Merged-chr3-86960712-1	chr3	86960612	86960812	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25874.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	2.42	1.51	2.28	0.8	7.36	3.14	5.31	3.95	0.59	0.5	3.52	0.0
Merged-chr16-29989722-3	chr16	29989618	29989818	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10594.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	8.88	7.55	7.99	15.28	15.14	8.78	13.29	8.92	14.16	6.03	16.08	9.4
Merged-chr2-102701681-3	chr2	102701575	102701775	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-4763.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	11.31	18.11	26.24	8.04	59.32	103.79	108.29	78.62	61.17	63.27	89.44	42.92
Merged-chr6-57745672-1	chr6	57745572	57745772	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43217.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.63	3.52	1.71	2.01	0.82	2.51	8.3	6.95	5.11	2.51	9.55	3.13
Merged-chr11-77406486-1	chr11	77406386	77406586	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 4 of 14)	ORR1D2|LTR|ERVL-MaLR	-57427.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	1.62	2.01	3.99	4.83	7.36	4.39	1.99	8.24	1.18	4.02	3.52	0.31
Merged-chr19-6300558-1	chr19	6300458	6300658	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010119)	TTS (NM_010119)	-5899.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	5.65	6.79	6.85	4.83	5.73	12.54	4.98	8.86	4.52	8.03	4.02	6.89
Merged-chr3-126621402-1	chr3	126621302	126621502	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	MTD|LTR|ERVL-MaLR	24451.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.23	5.53	3.42	1.61	2.45	4.39	3.32	2.24	15.34	13.05	27.13	12.22
Merged-chr13-21975000-4	chr13	21974886	21975086	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6195.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	6.86	11.32	10.27	26.14	14.73	10.98	8.97	11.69	16.72	8.03	16.08	13.78
Merged-chr11-82867917-1	chr11	82867817	82868017	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	2827.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	2.83	4.78	9.7	0.0	2.86	6.59	3.65	2.21	10.62	15.57	3.01	1.57
Merged-chr4-8804138-1	chr4	8804038	8804238	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	52814.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.04	2.52	3.42	9.25	22.5	9.72	19.27	27.28	7.28	5.02	2.51	10.02
Merged-chr16-92669729-2	chr16	92669631	92669831	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	RMER17C|LTR|ERVK	27598.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.85	8.55	7.42	5.23	8.59	11.6	10.3	7.68	16.72	14.56	18.09	12.84
Merged-chr6-13052308-1	chr6	13052208	13052408	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-17451.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	6.86	8.3	7.99	7.64	5.73	4.39	4.65	3.03	13.18	5.52	8.04	10.34
Merged-chr2-72203770-1	chr2	72203670	72203870	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81867.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.42	1.26	5.7	4.02	2.05	1.88	1.99	1.63	11.41	6.03	12.56	5.33
Merged-chr16-35871275-4	chr16	35871146	35871346	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039530, exon 1 of 17)	exon (NM_001039530, exon 1 of 17)	136.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	10.9	27.42	11.41	9.25	15.14	26.34	12.29	6.11	17.31	14.56	13.57	7.21
Merged-chr10-122745925-3	chr10	122745828	122746028	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	66613.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	6.06	13.08	5.7	8.85	14.73	18.5	12.95	20.36	27.14	19.08	31.15	17.54
Merged-chr12-99994634-1	chr12	99994534	99994734	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	30135.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.04	2.52	6.85	7.64	7.36	1.88	0.0	7.26	1.57	6.03	0.0	1.57
Merged-chr8-25743006-1	chr8	25742906	25743106	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361595, intron 7 of 15)	B1_Mur3|SINE|Alu	11274.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	3.23	6.29	5.7	3.62	5.32	7.21	5.98	9.76	5.31	7.03	5.02	5.64
Merged-chr7-17003406-1	chr7	17003306	17003506	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	8818.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	6.46	3.02	4.56	10.86	16.36	8.15	10.3	10.93	6.29	10.54	10.55	5.64
Merged-chr1-131931013-3	chr1	131930900	131931100	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 6 of 6)	intron (NM_001145804, intron 6 of 6)	20542.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	8.48	15.85	25.67	14.08	10.23	10.35	7.31	9.08	19.28	8.03	14.07	10.02
Merged-chr13-100837354-1	chr13	100837254	100837454	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3927.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.23	0.75	4.56	5.63	3.27	9.72	5.98	11.44	8.46	9.54	8.04	11.28
Merged-chr12-35269696-3	chr12	35269592	35269792	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-74795.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.44	8.55	13.69	8.04	20.05	22.58	8.64	18.42	27.93	28.62	29.65	22.56
Merged-chr16-33337322-3	chr16	33337236	33337436	+	894.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43400.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	15.34	13.33	11.98	11.66	14.73	25.4	9.3	9.0	22.03	19.58	21.61	8.14
Merged-chr4-145218055-3	chr4	145217967	145218167	+	894.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-23062.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.06	9.81	33.66	27.35	22.5	7.53	45.18	51.31	29.11	18.58	63.31	32.58
Merged-chr12-12300349-3	chr12	12300240	12300440	+	894.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38201.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	9.69	10.82	17.11	7.24	13.09	25.71	14.62	12.45	23.21	18.08	18.09	18.17
Merged-chr8-11430966-3	chr8	11430874	11431074	+	894.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 29 of 47)	intron (NM_009932, intron 29 of 47)	-46955.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	14.94	9.56	13.12	6.44	22.91	33.24	28.57	18.81	15.54	16.07	22.61	10.65
Merged-chr3-69062970-3	chr3	69062876	69063076	+	894.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18234.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	11.31	8.55	23.96	19.71	16.36	5.96	7.31	19.74	21.24	14.56	22.11	9.4
Merged-chr13-47230490-3	chr13	47230372	47230572	+	894.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36469.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	14.54	8.3	10.84	14.48	15.96	20.07	13.95	17.66	14.16	8.03	17.59	11.9
Merged-chr16-31293983-3	chr16	31293879	31294079	+	894.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18702.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	14.54	8.3	19.4	14.48	18.82	15.37	10.96	24.48	17.9	13.56	25.63	15.66
Merged-chr11-117353316-3	chr11	117353220	117353420	+	894.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	21007.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	15.75	15.09	19.4	4.02	29.05	31.67	20.59	25.79	22.62	11.05	9.04	9.08
Merged-chr15-98661505-3	chr15	98661413	98661613	+	894.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080981, intron 1 of 16)	intron (NM_001080981, intron 1 of 16)	1376.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	25.44	13.83	15.97	11.26	11.86	11.6	9.97	7.63	11.21	14.06	12.56	15.04
Merged-chr17-4995382-8	chr17	4995332	4995532	+	894.8541869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085355, exon 1 of 20)	exon (NM_001085355, exon 1 of 20)	358.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.27	9.06	12.55	6.03	8.18	8.78	10.63	8.07	14.95	13.05	13.06	12.84
Merged-chr12-117831748-3	chr12	117831671	117831871	+	894.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12090.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	14.54	11.07	18.83	6.03	13.91	15.37	7.64	18.31	15.34	15.57	11.56	10.96
Merged-chr5-150840326-2	chr5	150840247	150840447	+	894.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112260.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.85	4.28	18.83	7.24	15.14	9.72	17.94	17.38	14.55	5.52	19.09	10.02
Merged-chr3-95609376-2	chr3	95609255	95609455	+	894.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146133, intron 3 of 4)	intron (NM_146133, intron 3 of 4)	-15625.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.23	3.02	3.99	5.23	9.41	6.9	9.3	7.88	7.08	5.02	4.52	6.27
Merged-chr7-101051455-2	chr7	101051341	101051541	+	894.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39388.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	7.27	6.29	14.26	4.42	11.05	24.46	9.3	13.21	19.47	14.56	7.54	8.14
Merged-chr6-17652316-3	chr6	17652199	17652399	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 3 of 9)	ORR1E|LTR|ERVL-MaLR	15289.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	19.38	7.04	19.97	13.67	27.41	14.11	22.26	47.92	13.96	12.55	14.07	17.54
Merged-chrY-90739886-1	chrY	90739786	90739986	+	894.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15164.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.4	0.5	0.57	1.21	0.0	2.2	2.99	0.84	15.34	18.08	14.07	10.96
Merged-chr10-4041976-1	chr10	4041876	4042076	+	894.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	68901.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	2.42	5.79	1.71	2.01	3.27	7.84	4.32	6.98	21.05	16.07	16.08	9.08
Merged-chr7-126086357-3	chr7	126086256	126086456	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3945.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	14.94	15.85	18.25	20.11	13.91	21.32	16.61	16.26	25.37	12.05	12.06	3.45
Merged-chr9-7344314-3	chr9	7344208	7344408	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320077)	promoter-TSS (NM_001320077)	-89.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	8.48	5.28	20.54	14.08	15.96	11.92	7.97	12.76	12.98	13.56	11.05	6.89
Merged-chr6-135261304-3	chr6	135261191	135261391	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6955.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	7.27	11.07	7.99	12.07	17.18	10.98	7.97	11.05	18.29	18.08	20.6	8.14
Merged-chr10-117747740-3	chr10	117747639	117747839	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1381.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	7.27	11.57	11.98	18.1	10.23	8.47	8.3	11.33	22.82	19.08	23.62	12.84
Merged-chr4-85591251-3	chr4	85591147	85591347	+	894.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	385791.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	12.11	11.07	3.99	9.65	12.27	14.42	5.65	16.82	34.62	32.13	43.21	18.48
Merged-chr13-51848044-4	chr13	51847905	51848105	+	894.8035890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1330.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	10.09	14.59	7.99	6.44	7.77	13.17	8.3	14.72	15.34	34.14	24.12	12.22
Merged-chr18-56754987-1	chr18	56754887	56755087	+	894.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47174.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.81	2.26	5.7	3.62	15.14	7.21	11.29	13.23	2.95	2.51	4.02	4.39
Merged-chr17-65740502-3	chr17	65740412	65740612	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	32240.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.65	9.81	12.55	11.66	14.32	17.87	19.93	23.07	15.93	12.05	39.7	6.89
Merged-chr4-97772781-3	chr4	97772654	97772854	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4872.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	18.98	9.31	15.97	10.46	14.32	13.48	4.32	11.97	12.98	14.56	13.06	12.22
Merged-chr7-68112777-3	chr7	68112670	68112870	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	151463.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	14.13	6.54	20.54	20.91	11.45	12.54	5.98	16.91	16.33	3.51	9.55	9.71
Merged-chr16-76364785-3	chr16	76364684	76364884	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	8265.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	12.92	12.32	18.83	15.28	11.45	14.74	7.64	8.75	15.14	13.05	8.54	9.08
Merged-chr17-43017609-3	chr17	43017431	43017631	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	CpG	976.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	10.5	14.09	7.42	8.85	5.73	2.51	6.98	13.88	10.82	4.02	12.56	3.76
Merged-chr10-26375228-7	chr10	26375120	26375320	+	894.776184	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-1.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	11.71	11.07	10.84	4.83	4.09	5.96	7.97	6.0	7.67	10.54	12.06	16.92
Merged-chr7-25219147-3	chr7	25219044	25219244	+	894.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_207677, exon 2 of 5)	5' UTR (NM_207677, exon 2 of 5)	715.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	11.31	10.56	2.28	9.25	6.55	10.66	9.97	5.97	18.1	16.57	7.54	13.16
Merged-chr16-30604694-3	chr16	30604592	30604792	+	894.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4969.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	14.13	22.39	10.84	10.46	14.32	38.26	8.3	12.5	25.37	28.12	23.11	11.9
Merged-chr5-125306556-3	chr5	125306459	125306659	+	894.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	PB1D9|SINE|Alu	34535.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	11.71	16.1	10.27	20.51	13.91	15.05	4.65	15.81	16.52	13.05	17.59	13.47
Merged-chr2-144698191-3	chr2	144698083	144698283	+	894.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	98230.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	6.46	7.8	18.83	20.51	28.64	26.03	44.84	47.47	12.39	13.56	28.64	18.48
Merged-chr4-63683267-3	chr4	63683171	63683371	+	894.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48850.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	22.61	7.8	29.66	12.87	18.82	14.74	15.94	20.86	8.46	4.02	18.09	9.08
Merged-chr15-25412992-3	chr15	25412876	25413076	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	CpG	788.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.48	9.31	2.28	8.04	14.73	11.6	19.27	19.21	14.75	13.56	17.59	15.66
Merged-chr17-33995786-1	chr17	33995686	33995886	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001347346)	TTS (NM_001347346)	4547.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	20.59	19.37	11.41	11.26	2.45	2.2	0.66	1.43	5.11	4.02	1.51	2.19
Merged-chr13-81155555-1	chr13	81155455	81155655	+	894.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	191481.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.85	4.53	0.0	5.63	4.09	6.9	0.33	3.31	15.14	10.54	16.58	10.65
Merged-chr6-115343796-3	chr6	115343714	115343914	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17137.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	13.33	12.58	7.99	9.25	18.0	14.11	7.31	15.98	15.93	6.53	9.55	12.84
Merged-chr19-36768279-3	chr19	36768178	36768378	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31674.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	4.85	3.52	12.55	13.67	29.86	45.47	34.88	38.58	63.73	35.15	52.26	38.22
Merged-chr18-38298174-3	chr18	38298058	38298258	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361267, intron 2 of 9)	intron (NM_001361267, intron 2 of 9)	1353.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	9.29	9.81	6.28	6.03	14.32	7.53	3.65	5.83	16.52	7.53	7.03	10.65
Merged-chr5-122778975-2	chr5	122778897	122779097	+	894.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	CpG	413.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	3.63	6.29	22.82	8.85	14.32	10.98	9.3	8.86	8.26	10.54	13.06	12.22
Merged-chr14-61697085-2	chr14	61697059	61697259	+	894.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14786.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.46	5.03	9.13	3.22	7.36	2.2	5.65	4.91	3.15	3.01	6.03	3.76
Merged-chr15-78895865-3	chr15	78895777	78895977	+	894.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3891.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	14.54	25.4	16.54	2.01	17.18	23.2	6.64	4.07	27.54	12.55	17.08	10.65
Merged-chr7-130812594-3	chr7	130812522	130812722	+	894.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	38553.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	25.04	25.15	29.66	10.05	8.59	16.62	7.97	9.11	30.29	21.09	12.06	9.08
Merged-chr11-77196977-2	chr11	77196873	77197073	+	894.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-8005.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	8.08	3.52	10.84	7.24	20.86	19.13	10.96	18.34	16.33	13.05	18.59	9.08
Merged-chr5-134727287-2	chr5	134727165	134727365	+	894.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007925, intron 10 of 36)	intron (NM_007925, intron 10 of 36)	20058.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	7.27	3.27	3.42	5.23	11.45	14.74	10.3	7.93	7.87	25.61	11.05	10.34
Merged-chr13-64281183-3	chr13	64281075	64281275	+	894.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6187.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	7.67	10.56	11.98	11.26	30.68	31.36	18.27	29.69	24.19	13.05	26.63	15.98
Merged-chr15-31473001-2	chr15	31472850	31473050	+	894.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 20 of 25)	PB1D7|SINE|Alu	-19261.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.63	0.5	2.28	2.82	4.5	10.66	5.65	8.21	8.85	11.55	14.07	9.08
Merged-chr2-25427076-3	chr2	25426963	25427163	+	894.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013524)	TTS (NM_013524)	-1611.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	20.19	14.59	10.84	8.45	7.36	21.95	11.96	16.12	18.69	21.59	16.08	15.04
Merged-chr12-86082585-3	chr12	86082484	86082684	+	894.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199843)	promoter-TSS (NM_001199843)	23.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	16.15	10.06	14.26	12.47	13.5	11.92	12.95	15.08	24.39	20.08	22.11	8.14
Merged-chr9-88939154-3	chr9	88939042	88939242	+	894.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17778.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	15.34	26.16	18.25	8.85	15.14	24.46	12.95	2.69	27.34	13.56	13.06	6.27
Merged-chr2-19388912-3	chr2	19388805	19389005	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029619, intron 3 of 4)	intron (NM_029619, intron 3 of 4)	17269.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	16.56	12.58	9.13	21.72	18.82	23.2	10.96	29.8	14.95	9.54	40.7	7.83
Merged-chrX-74250595-3	chrX	74250491	74250691	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-4057.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	13.73	13.08	15.97	11.26	13.09	22.58	18.6	17.22	17.51	15.57	17.08	9.08
Merged-chr19-44332447-3	chr19	44332340	44332540	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	-886.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	10.5	12.32	6.85	14.88	13.5	14.11	18.27	11.16	25.37	16.07	16.58	18.17
Merged-chr3-115693675-3	chr3	115693580	115693780	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	21375.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	7.27	10.82	8.56	13.67	25.77	33.55	30.89	33.95	23.8	26.11	37.69	13.16
Merged-chr11-106302850-3	chr11	106302742	106302942	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008117)	promoter-TSS (NM_008117)	-946.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	18.98	9.31	2.85	15.28	20.86	15.37	2.66	10.6	14.75	21.09	17.08	8.46
Merged-chr4-43728705-1	chr4	43728605	43728805	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027511)	TTS (NM_027511)	-1329.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	13.33	3.77	5.7	2.82	7.36	12.86	3.32	8.83	1.77	2.01	1.0	1.57
Merged-chr3-148795974-1	chr3	148795874	148796074	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	158661.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.42	4.28	7.42	12.47	7.77	5.02	8.64	11.5	8.65	3.01	7.03	6.58
Merged-chr13-74090443-1	chr13	74090343	74090543	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28158.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	4.85	5.03	7.99	5.23	4.91	7.53	11.63	14.3	7.87	7.53	7.03	5.95
Merged-chr17-30494454-2	chr17	30494366	30494566	+	894.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	81821.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	48.05	26.66	65.03	41.02	8.18	5.33	7.64	11.52	8.06	12.55	8.04	2.51
Merged-chr16-5203698-6	chr16	5203543	5203743	+	894.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013796, exon 2 of 10)	exon (NM_013796, exon 2 of 10)	369.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	7.27	2.77	7.99	10.46	13.91	11.92	4.98	7.07	10.42	9.04	7.54	9.08
Merged-chr16-30040202-1	chr16	30040102	30040302	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045878)	promoter-TSS (NR_045878)	-723.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	2.42	4.78	5.13	3.22	3.27	7.53	13.29	9.42	4.52	10.54	8.04	5.64
Merged-chr13-100247184-3	chr13	100247076	100247276	+	894.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010870, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	160.0	NM_010870	17951.0	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	6.86	1.26	9.7	7.64	12.27	13.8	9.63	8.83	22.82	22.09	37.69	24.43
Merged-chr18-57844669-1	chr18	57844569	57844769	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34009.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.02	2.26	5.7	10.86	7.36	2.82	9.63	9.22	6.29	4.52	1.51	2.51
Merged-chr13-110597646-1	chr13	110597546	110597746	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	202602.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.27	3.27	3.42	8.45	9.0	5.02	6.64	14.19	5.9	5.02	6.03	7.52
Merged-chr10-42244900-5	chr10	42244795	42244995	+	894.4799800000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	31847.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	13.33	6.79	22.25	14.48	4.91	5.02	15.28	19.71	5.7	6.03	13.06	3.45
Merged-chr11-78165583-3	chr11	78165497	78165697	+	894.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009423)	promoter-TSS (NM_009423)	-47.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	19.79	11.07	9.13	8.04	24.55	17.25	5.98	16.35	28.72	39.16	31.15	9.71
Merged-chr7-38200466-3	chr7	38200444	38200644	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16757.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	5.65	7.55	5.7	7.24	6.95	7.53	11.63	4.65	2.95	4.52	2.01	3.45
Merged-chr12-25249080-3	chr12	25249003	25249203	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119929.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	10.9	8.3	20.54	22.52	5.73	10.35	9.63	24.25	15.14	12.05	17.59	14.41
Merged-chr4-143211913-3	chr4	143211772	143211972	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	837.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	26.25	24.4	7.99	7.24	10.64	22.89	5.31	5.44	31.67	24.6	11.56	8.14
Merged-chr2-28205583-3	chr2	28205496	28205696	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019498)	promoter-TSS (NM_019498)	-93.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	16.96	15.09	6.85	7.24	8.18	15.37	4.98	13.32	19.67	11.55	13.06	10.65
Merged-chr3-60502506-3	chr3	60502405	60502605	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	1326.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	8.88	7.55	10.84	6.44	10.64	11.92	9.97	17.36	19.28	9.54	29.65	19.11
Merged-chr16-19969659-2	chr16	19969558	19969758	+	894.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	13391.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	2.02	7.55	4.56	5.23	13.5	8.15	5.31	12.08	15.54	17.07	19.6	18.48
Merged-chr6-119396405-3	chr6	119396309	119396509	+	894.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-7675.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	12.11	9.31	15.4	6.84	24.96	25.09	18.27	33.31	20.26	15.06	23.11	11.9
Merged-chr11-82866682-2	chr11	82866585	82866785	+	894.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	4059.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	5.65	5.79	3.42	2.41	22.5	17.87	7.97	16.68	18.29	5.02	24.12	7.21
Merged-chr13-113556690-2	chr13	113556600	113556800	+	894.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-53856.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	1.21	0.0	4.56	0.4	11.45	10.03	20.93	7.26	9.24	8.03	29.65	15.98
Merged-chr17-57409874-3	chr17	57409762	57409962	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 7 of 22)	intron (NM_001355722, intron 7 of 22)	51176.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	15.75	8.3	13.69	21.32	29.46	11.6	9.3	21.25	17.31	24.1	35.68	11.9
Merged-chr8-66332393-3	chr8	66332286	66332486	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	Lx8b|LINE|L1	-53915.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	8.08	12.32	22.82	8.04	21.27	5.96	19.27	20.66	16.72	14.56	18.09	11.28
Merged-chr2-163929035-3	chr2	163928956	163929156	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-10373.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	17.36	10.06	10.27	15.28	20.05	13.8	18.6	15.36	7.87	8.03	7.03	7.52
Merged-chr4-99194698-3	chr4	99194616	99194816	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	569.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.23	8.3	15.97	11.26	11.86	18.5	17.94	21.31	21.24	14.56	34.17	13.16
Merged-chr18-56981330-1	chr18	56981230	56981430	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5951.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	6.46	8.55	12.55	9.25	12.27	7.53	4.98	13.23	10.03	5.52	7.03	3.13
Merged-chr12-32459517-1	chr12	32459417	32459617	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80728.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	3.63	2.26	6.85	10.86	9.0	3.45	10.96	13.29	5.9	7.53	14.57	2.82
Merged-chr3-65188485-3	chr3	65188379	65188579	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289450, intron 1 of 14)	intron (NM_001289450, intron 1 of 14)	376.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	11.71	13.58	7.99	10.86	17.59	15.05	19.6	16.23	18.88	17.57	21.1	11.59
Merged-chr3-109452175-1	chr3	109452075	109452275	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111492.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.85	3.77	7.42	11.26	12.68	8.78	2.33	14.52	3.93	1.0	5.02	3.13
Merged-chr4-26438102-1	chr4	26438002	26438202	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91450.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	4.04	3.52	4.56	11.26	11.86	10.66	13.29	37.93	5.31	7.53	9.04	4.07
Merged-chr14-14686339-3	chr14	14686262	14686462	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16663.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	8.48	12.58	24.53	24.94	19.23	14.74	10.63	18.84	16.52	11.05	10.05	5.01
Merged-chr1-77459831-1	chr1	77459731	77459931	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	36937.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.42	4.78	8.56	7.24	10.23	4.39	6.64	12.0	5.11	3.51	7.03	3.13
Merged-chr4-129051408-3	chr4	129051316	129051516	+	894.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6855.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	12.11	12.83	21.11	24.53	9.82	15.68	6.98	10.12	19.28	28.12	11.05	16.29
Merged-chr1-37487170-3	chr1	37487072	37487272	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1433.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	11.71	8.55	7.99	14.88	20.46	9.72	16.28	13.04	20.46	13.56	17.59	15.35
Merged-chr18-4348978-6	chr18	4348891	4349091	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007746, exon 2 of 8)	exon (NM_007746, exon 2 of 8)	3962.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.67	9.56	8.56	4.83	6.14	5.64	7.97	10.21	16.92	8.03	12.06	8.14
Merged-chr12-40464062-3	chr12	40463944	40464144	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	17991.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	12.52	7.04	20.54	18.1	11.05	17.25	19.27	14.86	14.75	3.51	11.56	7.21
Merged-chr17-28408080-3	chr17	28407961	28408161	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42845.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	20.19	6.29	10.27	12.07	20.86	26.34	12.95	22.57	17.9	6.03	15.58	12.84
Merged-chr6-116006959-3	chr6	116006856	116007056	+	894.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11951.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	22.21	11.07	7.99	8.45	13.91	24.15	13.95	14.5	19.67	11.55	16.08	9.4
Merged-chr4-115052825-3	chr4	115052739	115052939	+	894.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3587.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	23.42	8.55	11.98	10.86	11.86	13.17	22.92	20.41	20.06	17.07	29.65	12.53
Merged-chr4-95213154-3	chr4	95213069	95213269	+	894.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160947.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	13.73	10.56	11.98	7.64	24.55	21.32	20.93	27.98	16.92	12.05	19.09	10.65
Merged-chr4-150156390-3	chr4	150156291	150156491	+	894.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085529, intron 4 of 11)	intron (NM_001085529, intron 4 of 11)	7419.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	14.54	11.82	15.97	13.67	9.82	6.59	13.29	16.09	16.52	5.52	25.12	18.8
Merged-chr6-34682236-2	chr6	34682141	34682341	+	894.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-27203.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.44	6.04	4.56	6.44	11.86	10.66	9.97	10.35	16.13	19.58	14.07	9.71
Merged-chr15-73176750-3	chr15	73176638	73176838	+	894.14447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	8209.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	11.71	14.59	28.52	20.91	11.45	16.62	9.63	16.91	24.0	14.56	22.61	7.83
Merged-chr4-88868241-6	chr4	88868116	88868316	+	894.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	11985.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	8.88	8.8	5.13	4.02	9.41	9.41	5.65	9.17	16.52	10.04	11.05	9.08
Merged-chr7-19303317-3	chr7	19303166	19303366	+	894.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6779.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	10.9	20.63	4.56	7.24	18.41	22.26	2.33	1.93	16.13	32.13	7.54	4.39
Merged-chr11-6627966-3	chr11	6627853	6628053	+	894.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-1886.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	14.54	8.05	7.42	11.66	13.09	15.99	19.93	23.58	18.29	21.09	41.71	20.68
Merged-chr3-68976222-3	chr3	68976148	68976348	+	894.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026641, intron 5 of 19)	intron (NM_026641, intron 5 of 19)	28322.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	15.34	15.09	25.67	11.66	15.14	15.37	13.95	26.02	13.96	17.57	16.08	6.89
Merged-chr17-30182907-3	chr17	30182817	30183017	+	894.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356265, intron 4 of 5)	intron (NM_001356265, intron 4 of 5)	177878.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	13.33	10.31	35.37	19.71	11.86	11.6	4.32	22.18	9.64	11.55	26.63	14.41
Merged-chr14-71209206-2	chr14	71209113	71209313	+	894.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42060.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	10.9	21.63	49.06	29.36	11.05	15.05	12.62	26.1	0.0	1.0	0.0	0.63
Merged-chr2-156420920-3	chr2	156420918	156421118	+	894.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013510, exon 1 of 22)	5' UTR (NM_013510, exon 1 of 22)	109.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	8.88	8.8	8.56	6.03	14.32	8.78	4.98	9.76	11.6	10.04	5.02	12.53
Merged-chr4-139761404-2	chr4	139761295	139761495	+	894.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011039, intron 7 of 8)	intron (NM_011039, intron 7 of 8)	71573.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	12.11	15.09	14.26	3.62	1.23	0.0	0.0	0.0	16.13	21.09	23.62	9.4
Merged-chr2-163710992-3	chr2	163710885	163711085	+	894.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	16948.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	6.86	14.34	14.26	18.9	5.32	5.64	8.64	14.24	13.96	3.51	13.57	5.64
Merged-chr13-33047635-3	chr13	33047524	33047724	+	894.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	20210.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	5.65	5.28	6.28	14.88	7.36	4.08	10.63	16.99	17.11	10.04	29.14	18.48
Merged-chr15-53235450-1	chr15	53235350	53235550	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	110733.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.44	5.53	4.56	10.46	2.05	8.78	2.99	4.23	7.87	5.02	3.01	7.83
Merged-chr4-19576585-3	chr4	19576481	19576681	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025476, intron 1 of 9)	intron (NM_025476, intron 1 of 9)	1515.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	14.54	14.09	7.42	10.46	27.41	16.62	9.3	16.12	14.75	23.1	10.55	22.56
Merged-chr4-59372919-1	chr4	59372819	59373019	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	65714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	8.08	4.78	7.42	1.21	6.95	5.33	7.31	10.96	3.54	2.01	4.52	3.76
Merged-chr14-40924938-1	chr14	40924838	40925038	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	MER58A|DNA|hAT-Charlie	23271.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.04	5.79	4.56	5.23	7.77	5.02	3.32	6.81	5.7	4.52	4.52	2.82
Merged-chr9-95170285-3	chr9	95170201	95170401	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	236969.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	22.61	23.9	31.38	11.66	24.14	55.19	26.57	25.74	12.59	15.06	17.08	10.02
Merged-chr2-145746796-1	chr2	145746696	145746896	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-39320.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	2.77	1.14	2.41	5.32	11.92	12.62	12.62	0.79	1.51	4.02	3.76
Merged-chr10-98907285-1	chr10	98907185	98907385	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7357.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.44	1.76	7.42	6.44	4.91	9.72	5.65	13.37	7.47	5.52	18.09	6.27
Merged-chr3-27291600-2	chr3	27291492	27291692	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25485.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	1.62	0.5	0.57	0.0	27.0	19.13	8.3	6.84	29.5	28.62	28.14	15.04
Merged-chr6-97929534-1	chr6	97929434	97929634	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001178049)	promoter-TSS (NM_001178049)	-283.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.81	1.26	10.27	0.0	3.68	3.45	9.97	7.96	1.97	0.5	6.53	0.63
Merged-chr2-166729809-3	chr2	166729705	166729905	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15973.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	15.34	5.79	14.83	8.85	7.77	25.4	4.32	12.31	20.85	12.05	24.12	13.47
Merged-chr15-81142356-3	chr15	81142248	81142448	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-37301.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.88	25.15	25.67	8.85	33.55	44.21	10.3	23.38	31.08	20.08	31.66	20.68
Merged-chr1-131126627-1	chr1	131126527	131126727	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11607.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	10.09	6.04	10.27	8.85	13.91	6.59	6.31	12.0	9.44	6.53	8.54	4.7
Merged-chr2-166694754-2	chr2	166694631	166694831	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	ORR1B1|LTR|ERVL-MaLR	19101.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.63	8.3	6.28	5.63	5.73	15.37	9.3	8.44	15.34	16.07	20.1	3.76
Merged-chr3-100531105-3	chr3	100531004	100531204	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-41912.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	9.69	9.06	15.97	7.24	4.5	4.08	5.98	15.56	33.63	20.08	28.64	23.18
Merged-chr11-100938323-3	chr11	100938218	100938418	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	1222.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	10.09	6.54	22.82	13.27	25.36	23.52	16.61	24.06	47.8	40.17	33.67	14.41
Merged-chr7-16990232-1	chr7	16990132	16990332	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4356.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	4.85	4.53	2.28	0.0	3.68	7.53	6.31	11.27	7.67	9.54	9.55	4.7
Merged-chr3-132865304-1	chr3	132865204	132865404	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	13292.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	2.42	4.28	6.85	5.23	5.73	2.51	7.31	15.06	3.54	2.51	4.02	5.95
Merged-chr19-29478820-3	chr19	29478696	29478896	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43191.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	12.11	4.78	27.38	24.94	27.0	11.92	29.56	28.12	23.6	8.03	15.58	19.11
Merged-chr6-54058970-3	chr6	54058884	54059084	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	19052.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	9.69	8.55	24.53	11.66	24.96	11.6	17.94	28.07	23.6	16.07	21.61	12.22
Merged-chr18-79993908-2	chr18	79993815	79994015	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-52980.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	10.5	13.83	9.13	9.65	11.45	15.68	11.29	12.95	7.87	3.01	2.51	3.76
Merged-chr8-115678349-3	chr8	115678249	115678449	+	893.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	28545.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	17.77	9.06	9.7	18.9	15.55	30.73	15.28	31.49	20.26	12.55	21.61	15.35
Merged-chr13-83041732-3	chr13	83041642	83041842	+	893.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-343409.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	12.92	10.06	20.54	20.11	25.36	16.93	17.94	29.89	16.52	14.56	13.57	7.52
Merged-chr7-34198513-3	chr7	34198412	34198612	+	893.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1842.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	9.69	10.56	9.13	16.09	9.0	11.29	7.64	9.87	20.26	21.09	23.62	11.59
Merged-chrX-98698892-3	chrX	98698788	98698988	+	893.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001313754, exon 14 of 26)	exon (NM_001313754, exon 14 of 26)	192137.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	10.09	9.81	11.41	26.95	13.09	15.37	4.65	12.08	21.24	18.58	19.6	8.14
Merged-chr2-35718244-3	chr2	35718160	35718360	+	893.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001602, intron 8 of 13)	intron (NM_001001602, intron 8 of 13)	21528.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	18.57	7.04	11.98	27.75	26.59	17.56	24.25	40.77	12.78	11.05	17.08	10.02
Merged-chr13-59879462-3	chr13	59879389	59879589	+	893.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56342.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	21.8	12.32	9.13	24.53	14.32	10.03	8.97	7.12	15.93	8.54	16.08	12.84
Merged-chr10-80295829-3	chr10	80295704	80295904	+	893.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	3295.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	18.17	10.31	20.54	10.05	12.68	19.13	10.96	10.23	16.52	9.54	8.54	12.84
Merged-chr17-47923757-3	chr17	47923700	47923900	+	893.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028767, intron 1 of 16)	CpG	832.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	31.09	17.1	14.26	5.23	22.09	59.27	13.29	7.96	29.5	24.6	18.09	5.64
Merged-chr19-40629115-3	chr19	40629016	40629216	+	893.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	16750.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	12.92	9.81	19.4	20.51	20.46	19.13	21.26	24.39	21.64	12.55	17.59	22.56
Merged-chr9-59653565-2	chr9	59653464	59653664	+	893.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2804.0	NM_001253883	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	2.42	4.78	3.99	4.02	18.0	19.76	9.3	17.64	22.62	25.11	10.05	15.35
Merged-chr7-25436878-2	chr7	25436784	25436984	+	893.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23998.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	8.88	3.52	3.42	0.8	12.27	15.37	4.32	14.94	15.93	15.06	10.55	12.22
Merged-chr19-53403968-3	chr19	53403890	53404090	+	893.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13356.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	20.59	16.85	33.66	9.25	13.09	15.37	22.26	16.01	11.6	20.08	7.54	4.07
Merged-chr19-53568025-3	chr19	53567927	53568127	+	893.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-32369.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	29.07	24.65	42.21	12.87	49.09	24.46	41.19	41.38	18.1	12.55	12.06	5.33
Merged-chr19-17333984-3	chr19	17333878	17334078	+	893.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	5527.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	10.5	13.33	18.83	15.69	10.64	9.41	8.3	17.92	27.54	24.6	20.1	10.34
Merged-chr1-127248775-2	chr1	127248684	127248884	+	893.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	43798.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	8.48	4.53	14.83	4.83	16.36	13.17	10.63	17.16	14.75	12.05	9.04	11.9
Merged-chr11-59624474-2	chr11	59624371	59624571	+	893.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	11505.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	65.01	42.76	57.62	62.74	8.18	10.98	7.31	10.12	6.88	13.56	10.05	7.52
Merged-chr2-25628935-3	chr2	25628789	25628989	+	893.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-915.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	4.44	9.56	17.68	14.08	16.77	14.11	44.51	68.02	7.08	6.03	16.58	18.17
Merged-chr6-120972052-3	chr6	120971937	120972137	+	893.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 21 of 31)	intron (NM_001270475, intron 21 of 31)	13193.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	8.88	19.62	8.56	11.26	13.09	15.68	8.64	9.87	14.55	20.59	13.06	9.08
Merged-chr8-72320919-3	chr8	72320825	72321025	+	893.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	1863.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	13.33	7.29	13.12	10.86	13.09	7.21	9.97	11.1	6.29	12.05	18.09	14.72
Merged-chr9-45122489-3	chr9	45122401	45122601	+	893.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4625.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	21.8	19.12	21.11	15.28	16.77	26.03	13.62	10.32	11.21	7.03	14.57	8.14
Merged-chr1-34835840-3	chr1	34835726	34835926	+	893.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	7224.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	16.56	10.82	22.82	17.7	10.64	14.74	7.97	28.49	16.72	12.55	14.57	16.92
Merged-chr2-104095836-3	chr2	104095718	104095918	+	893.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111060)	promoter-TSS (NM_001111060)	17.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	12.52	11.57	13.12	3.22	26.59	21.64	14.62	14.33	7.47	3.51	16.58	11.59
Merged-chrX-142778884-2	chrX	142778780	142778980	+	893.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 4 of 8)	intron (NR_152447, intron 4 of 8)	39880.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	3.23	2.77	2.28	1.21	10.64	1.88	6.31	14.38	13.18	7.53	18.09	9.71
Merged-chr9-124275212-3	chr9	124275098	124275298	+	893.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37496.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	4.44	9.56	11.98	6.03	17.59	20.38	2.99	10.09	31.27	36.65	19.09	25.37
Merged-chr13-43478735-1	chr13	43478635	43478835	+	893.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	2238.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	4.44	6.04	2.28	4.42	6.55	8.78	1.99	10.21	6.29	6.53	4.52	7.21
Merged-chr11-83530662-3	chr11	83530557	83530757	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-139.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	19.79	36.97	25.1	9.25	20.86	36.69	4.65	4.85	45.24	34.14	26.63	14.41
Merged-chr8-24422269-3	chr8	24422145	24422345	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16701.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	14.54	4.28	4.56	9.25	23.73	20.7	13.29	28.68	20.06	21.09	26.13	20.05
Merged-chr14-77448213-1	chr14	77448113	77448313	+	893.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 5 of 19)	intron (NM_001253759, intron 5 of 19)	58655.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.0	0.25	2.28	0.0	0.0	0.63	0.0	0.06	14.36	21.09	39.7	12.22
Merged-chr11-120039832-3	chr11	120039778	120039978	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1903.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	10.09	12.83	7.42	8.45	21.27	17.56	9.3	18.31	12.39	6.03	9.04	16.92
Merged-chr17-88284649-3	chr17	88284537	88284737	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156067.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	16.96	7.8	11.98	20.11	17.18	27.91	10.3	26.75	43.86	24.6	41.71	27.25
Merged-chr10-17589333-2	chr10	17589233	17589433	+	893.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133895.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	7.27	3.77	9.13	3.22	3.68	14.42	9.97	9.28	6.29	10.04	16.58	4.39
Merged-chr17-5445585-3	chr17	5445498	5445698	+	893.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5338.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	10.9	12.83	17.68	15.28	14.73	17.25	12.29	26.36	16.92	18.58	14.57	10.34
Merged-chr6-16738103-2	chr6	16737985	16738185	+	893.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160356.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	12.52	10.06	5.7	18.1	9.0	10.35	11.63	12.48	8.26	4.02	19.09	5.95
Merged-chr9-110682551-3	chr9	110682454	110682654	+	893.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	MIR|SINE|MIR	26051.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	9.69	16.85	8.56	12.47	22.91	19.44	11.96	22.51	37.76	35.65	33.67	30.39
Merged-chr6-145302305-3	chr6	145302234	145302434	+	893.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	51782.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.08	9.81	19.4	6.03	20.46	13.48	8.3	18.93	39.14	28.12	31.66	23.18
Merged-chr1-184738098-3	chr1	184737985	184738185	+	893.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5592.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	9.69	12.58	15.97	10.46	11.86	18.81	11.29	14.75	16.33	14.56	20.1	17.54
Merged-chr3-133314693-3	chr3	133314596	133314796	+	893.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293641, intron 1 of 11)	intron (NM_001293641, intron 1 of 11)	4586.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	19.79	12.32	14.83	14.08	20.05	15.37	8.64	20.72	26.55	10.54	33.67	11.28
Merged-chr19-46045892-2	chr19	46045804	46046004	+	893.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113408)	promoter-TSS (NM_001113408)	-593.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	6.06	6.54	15.4	4.42	15.96	11.92	3.32	6.39	16.13	17.07	15.58	15.66
Merged-chr11-63906729-3	chr11	63906672	63906872	+	893.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	15512.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	11.71	13.83	31.38	20.11	12.68	10.03	7.31	10.96	10.42	13.05	14.57	15.35
Merged-chr19-32259256-3	chr19	32259154	32259354	+	893.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-48241.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	17.36	7.29	5.7	14.88	9.0	21.64	11.63	22.35	25.37	13.56	13.57	14.72
Merged-chr7-5083990-1	chr7	5083890	5084090	+	893.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010147, intron 3 of 11)	intron (NM_010147, intron 3 of 11)	3755.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	4.44	3.52	5.13	0.8	8.18	2.51	12.95	18.67	3.93	7.03	9.04	10.34
Merged-chr5-125380987-2	chr5	125380841	125381041	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9076.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	12.11	9.56	7.42	4.83	4.09	20.7	0.33	2.83	3.74	2.51	0.5	1.88
Merged-chr11-29879873-1	chr11	29879773	29879973	+	893.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-54205.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.81	3.02	4.56	4.02	5.73	6.59	10.63	15.93	5.7	4.02	6.03	9.4
Merged-chr4-3929784-3	chr4	3929683	3929883	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	8622.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	8.08	14.34	6.85	13.27	20.86	13.48	11.96	13.77	25.37	18.08	32.66	15.35
Merged-chr7-143041264-2	chr7	143041168	143041368	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11482.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	10.5	11.07	4.56	6.84	3.27	5.64	7.64	2.16	17.51	12.05	18.59	7.52
Merged-chr5-122911379-2	chr5	122911254	122911454	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-11004.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	9.69	13.33	18.25	22.12	8.59	10.98	5.65	8.21	1.97	0.0	0.0	2.82
Merged-chr8-90870539-3	chr8	90870447	90870647	+	893.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41712.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	11.71	12.83	28.52	11.26	12.68	30.1	19.6	26.64	19.87	10.04	24.12	9.4
Merged-chr2-91101564-3	chr2	91101471	91101671	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4893.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	6.86	9.56	9.13	10.05	11.45	19.13	3.32	11.02	9.24	23.1	21.61	13.47
Merged-chr15-100119578-3	chr15	100119458	100119658	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-34838.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	13.73	8.55	19.97	9.25	24.14	23.52	13.95	28.6	15.74	20.08	17.08	7.52
Merged-chr4-130918918-3	chr4	130918780	130918980	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	RMER5|LTR|ERV1	5546.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	10.9	12.07	15.4	3.22	6.95	17.87	9.63	8.86	13.96	5.02	5.53	13.47
Merged-chr1-71938725-3	chr1	71938632	71938832	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50620.0	NR_027658	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	6.86	4.02	13.12	12.47	25.36	21.64	40.86	51.65	12.59	13.56	17.59	14.1
Merged-chr2-23005829-3	chr2	23005716	23005916	+	893.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34425.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	12.92	12.58	15.97	21.32	13.5	11.29	19.27	19.35	16.13	15.06	24.12	10.02
Merged-chr2-148531747-3	chr2	148531571	148531771	+	893.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88136.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	8.08	6.54	12.55	9.25	12.68	11.6	18.6	14.72	4.72	14.56	15.07	3.76
Merged-chr4-9097200-3	chr4	9097076	9097276	+	893.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172117.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	16.96	10.31	3.42	10.86	8.59	19.13	12.62	10.91	12.59	10.04	6.03	4.7
Merged-chr11-4294692-1	chr11	4294592	4294792	+	893.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27896.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	4.85	4.28	16.54	2.01	7.77	18.19	10.63	7.21	2.95	3.51	4.52	5.33
Merged-chr2-157139055-3	chr2	157138955	157139155	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3833.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	6.06	8.8	13.69	9.65	9.41	13.8	12.62	14.58	25.77	22.59	27.13	12.22
Merged-chr9-121249945-3	chr9	121249861	121250061	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177589, intron 15 of 36)	intron (NM_177589, intron 15 of 36)	27211.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	14.94	7.55	14.26	14.48	12.27	9.09	10.63	13.26	24.78	20.59	35.17	15.98
Merged-chrX-36136550-3	chrX	36136468	36136668	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 4 of 10)	L2c|LINE|L2	24460.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	12.11	10.06	8.56	9.25	16.36	23.52	9.3	10.32	20.26	13.56	23.11	14.41
Merged-chr10-117776107-3	chr10	117776004	117776204	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134010, intron 11 of 27)	MTC|LTR|ERVL-MaLR	16601.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	10.9	11.32	26.81	12.87	13.09	31.67	28.57	19.04	38.94	30.13	76.38	18.17
Merged-chr3-27345703-3	chr3	27345616	27345816	+	893.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25635.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	11.71	23.14	19.4	7.64	10.64	29.16	18.27	9.0	31.86	34.14	31.15	7.21
Merged-chr11-54628532-3	chr11	54628447	54628647	+	893.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	32401.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	12.52	17.86	25.1	10.46	9.41	16.31	3.65	12.36	45.83	35.65	28.14	12.84
Merged-chr7-122087296-2	chr7	122087202	122087402	+	893.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14546.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	5.65	14.34	12.55	15.28	10.23	4.39	1.99	7.79	4.72	10.04	10.05	12.53
Merged-chr3-96219314-3	chr3	96219231	96219431	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-585.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	10.09	9.06	6.85	8.45	15.96	13.8	13.29	8.02	11.41	6.53	14.57	7.52
Merged-chr9-120034531-3	chr9	120034426	120034626	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10928.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	18.17	12.07	26.81	31.77	13.09	8.78	19.93	28.35	18.29	9.04	27.13	12.53
Merged-chr8-117259504-3	chr8	117259451	117259651	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2532.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.25	8.3	16.54	8.45	6.95	9.72	4.32	8.94	8.06	11.05	0.5	1.88
Merged-chr11-49755435-1	chr11	49755335	49755535	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38720.0	NM_013529	14584.0	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	4.04	4.28	9.7	9.65	1.64	8.78	7.31	14.66	6.29	6.53	9.04	5.01
Merged-chr18-61323248-2	chr18	61323138	61323338	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133249, exon 2 of 12)	exon (NM_133249, exon 2 of 12)	74662.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	1.21	5.28	4.56	7.24	3.27	14.74	6.98	11.13	13.57	5.52	13.57	11.28
Merged-chr5-38598774-1	chr5	38598674	38598874	+	893.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-37179.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.0	0.0	0.0	0.4	0.0	0.0	0.0	0.0	14.16	31.63	35.17	9.08
Merged-chr18-56701015-2	chr18	56700902	56701102	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6811.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.85	12.07	6.85	4.42	6.95	9.72	11.63	13.4	31.67	13.56	29.14	15.35
Merged-chr13-64275780-3	chr13	64275669	64275869	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172587)	promoter-TSS (NM_172587)	-781.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	10.9	14.09	4.56	11.26	8.18	12.86	8.64	11.83	16.92	10.54	11.05	5.33
Merged-chr10-75055895-1	chr10	75055795	75055995	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5001.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	5.65	4.53	5.7	5.63	2.86	11.29	10.3	8.94	3.34	2.01	5.53	5.33
Merged-chr1-119917189-3	chr1	119917107	119917307	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4039.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	6.86	9.06	12.55	18.1	15.96	7.84	9.63	16.88	12.39	12.05	13.57	14.41
Merged-chr9-59476819-3	chr9	59476722	59476922	+	893.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045640)	TTS (NR_045640)	4919.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	12.11	10.82	20.54	14.88	5.32	11.6	6.64	10.93	12.98	18.08	16.08	15.66
Merged-chr15-25961845-2	chr15	25961739	25961939	+	893.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	13612.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	4.85	3.27	7.99	14.08	11.86	12.86	32.88	25.32	12.98	10.54	29.65	12.84
Merged-chr17-35045327-3	chr17	35045244	35045444	+	893.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146215, exon 4 of 25)	exon (NM_001146215, exon 4 of 25)	1278.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	6.86	7.29	11.98	12.47	16.36	21.64	14.95	14.1	12.78	18.58	9.04	19.11
Merged-chr8-110902455-3	chr8	110902350	110902550	+	893.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172283)	promoter-TSS (NM_172283)	38.0	NM_172283	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	6.86	7.8	10.27	3.22	11.45	12.86	11.96	13.32	23.01	9.54	21.61	19.11
Merged-chr15-82147800-3	chr15	82147691	82147891	+	893.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	CpG	522.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	13.73	10.56	7.42	7.24	6.95	11.6	10.96	6.62	24.19	19.58	14.07	8.46
Merged-chr17-53684159-2	chr17	53684049	53684249	+	893.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028232, intron 4 of 8)	intron (NM_028232, intron 4 of 8)	5166.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	0.81	2.26	0.0	1.21	1.23	6.27	7.31	8.8	16.33	6.03	24.12	21.93
Merged-chr10-127742083-2	chr10	127742004	127742204	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198035, exon 2 of 2)	exon (NM_198035, exon 2 of 2)	2566.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	10.5	12.58	5.7	3.62	19.64	8.15	7.64	12.08	7.67	2.01	2.51	5.01
Merged-chr5-140611097-4	chr5	140610983	140611183	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3742.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	18.57	9.56	29.66	17.7	20.05	21.32	33.22	30.08	19.47	26.61	24.12	17.23
Merged-chr11-88059252-3	chr11	88059156	88059356	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9023.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	14.54	14.84	4.56	13.27	14.73	19.44	4.32	7.4	15.54	25.11	27.64	11.28
Merged-chr2-132604089-1	chr2	132603989	132604189	+	893.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	5893.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	2.42	1.51	1.14	5.23	11.86	7.21	10.96	18.64	3.93	4.52	4.02	4.39
Merged-chr16-58453151-2	chr16	58453061	58453261	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	44626.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	10.09	8.3	15.97	33.38	18.82	24.46	53.48	55.91	5.7	0.5	11.05	4.7
Merged-chr10-111083506-3	chr10	111083398	111083598	+	893.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73432.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	7.67	16.85	19.4	19.31	22.09	15.68	11.29	22.91	17.7	16.57	15.58	8.14
Merged-chr1-62703393-6	chr1	62703378	62703578	+	893.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010939, exon 1 of 16)	5' UTR (NM_010939, exon 1 of 16)	161.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	12.11	23.39	12.55	18.9	11.45	13.8	14.62	12.64	10.62	4.02	7.03	5.01
Merged-chr12-70969211-3	chr12	70969112	70969312	+	893.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5411.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	21.0	8.05	21.11	20.51	15.55	23.52	9.63	9.2	33.44	30.63	15.07	26.0
Merged-chr9-106685218-1	chr9	106685118	106685318	+	893.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104459, intron 1 of 4)	intron (NR_104459, intron 1 of 4)	598.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	4.44	6.54	3.42	5.23	1.64	9.72	4.65	3.39	14.95	8.54	6.53	10.65
Merged-chr17-43576531-3	chr17	43576426	43576626	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	8075.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	10.5	12.32	14.83	12.87	43.77	25.71	30.56	25.15	20.65	12.05	22.11	15.35
Merged-chr1-149947808-3	chr1	149947705	149947905	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	13485.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	10.5	8.05	13.69	16.49	18.0	22.89	18.27	32.02	13.57	21.09	26.13	11.9
Merged-chrX-74429692-3	chrX	74429616	74429816	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010547)	promoter-TSS (NM_010547)	35.0	NM_010547	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	18.98	10.82	14.26	10.86	7.36	22.58	4.32	17.8	10.82	9.04	20.6	15.66
Merged-chr7-125553427-3	chr7	125553456	125553656	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	1274.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	2.42	7.29	10.27	0.8	0.82	0.63	5.65	0.67	4.52	1.51	4.02	9.71
Merged-chr15-89210288-2	chr15	89210180	89210380	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-1279.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	13.73	10.56	7.99	8.04	8.18	8.15	10.3	8.36	12.19	15.57	13.57	10.02
Merged-chr4-155802815-2	chr4	155802731	155802931	+	893.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025570)	promoter-TSS (NM_025570)	-47.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	2.42	6.04	5.7	5.63	7.77	12.54	4.32	9.87	17.7	7.53	6.53	11.28
Merged-chr11-37043966-2	chr11	37043863	37044063	+	893.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99722.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	8.08	4.53	3.99	0.8	15.55	17.56	12.62	25.12	17.51	6.53	21.61	7.52
Merged-chr11-76529858-3	chr11	76529767	76529967	+	893.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-20448.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	15.34	8.3	18.25	8.04	36.82	27.28	29.9	31.32	24.98	21.59	13.06	17.23
Merged-chr11-70020890-3	chr11	70020794	70020994	+	893.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	2289.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	9.69	18.11	15.4	12.07	14.73	21.32	10.3	9.73	29.11	11.05	43.21	13.47
Merged-chr3-32508995-5	chr3	32508908	32509108	+	893.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1542.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	6.86	11.82	9.13	2.82	6.55	11.92	9.97	3.76	10.82	6.03	10.05	4.07
Merged-chr5-30849936-3	chr5	30849826	30850026	+	893.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11881.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	10.5	14.84	16.54	11.26	15.96	12.54	9.97	12.14	16.72	8.54	6.53	19.42
Merged-chr7-99781557-3	chr7	99781451	99781651	+	893.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14387.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	5.65	9.56	5.7	18.5	12.27	14.74	10.96	20.58	20.85	12.05	18.09	8.14
Merged-chr4-3482270-3	chr4	3482161	3482361	+	893.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54829.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	24.63	16.6	62.18	49.47	15.55	15.37	13.29	22.51	12.59	8.54	10.55	7.83
Merged-chr3-52625362-3	chr3	52625261	52625461	+	893.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108397.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	15.34	8.8	18.83	11.26	21.27	18.81	16.61	19.79	8.65	14.06	19.09	6.58
Merged-chr6-112778396-3	chr6	112778308	112778508	+	893.105591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 5 of 21)	MIR3|SINE|MIR	-81738.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	10.5	10.06	27.38	18.9	18.82	10.35	20.59	31.71	15.74	24.1	32.16	13.16
Merged-chr1-84465069-3	chr1	84464955	84465155	+	893.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-180410.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	9.69	3.52	26.81	16.49	18.0	13.8	29.56	25.01	11.6	21.59	15.58	15.04
Merged-chr5-122951737-3	chr5	122951605	122951805	+	893.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37394.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	10.9	10.06	17.11	13.67	11.05	8.78	9.63	13.6	18.88	12.05	19.09	5.95
Merged-chr7-4087721-3	chr7	4087623	4087823	+	893.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-24519.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.06	12.83	14.26	7.24	9.82	6.9	3.65	14.1	15.14	11.55	17.59	14.41
Merged-chr12-3301572-3	chr12	3301450	3301650	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	8419.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	17.36	13.58	14.26	8.04	6.95	12.23	4.65	6.59	16.72	15.06	13.06	5.64
Merged-chr8-61586786-1	chr8	61586686	61586886	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	B4|SINE|B4	4383.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.83	5.28	5.13	4.42	3.27	4.7	6.31	7.26	4.33	2.51	4.52	5.33
Merged-chr16-31949130-1	chr16	31949030	31949230	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	584.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	7.67	6.54	10.27	6.03	6.95	16.31	7.64	10.01	7.08	7.53	5.53	9.4
Merged-chr3-84749439-1	chr3	84749339	84749539	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-66138.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.42	0.5	0.0	0.0	6.14	8.78	8.97	14.64	0.39	2.51	1.0	2.51
Merged-chr8-24938799-1	chr8	24938699	24938899	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153397, intron 1 of 21)	MTD|LTR|ERVL-MaLR	10005.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.81	1.01	0.57	2.41	8.18	14.42	17.27	18.79	6.69	3.01	17.08	3.76
Merged-chr9-53130602-1	chr9	53130502	53130702	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029936, intron 16 of 17)	MTD|LTR|ERVL-MaLR	117510.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	3.63	2.77	2.85	4.42	1.64	3.14	8.97	7.15	4.72	0.0	9.04	5.64
Merged-chr3-148981964-1	chr3	148981864	148982064	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27329.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.42	4.28	1.71	1.21	5.73	19.76	4.32	7.07	1.38	0.5	1.51	0.94
Merged-chr16-57353875-3	chr16	57353775	57353975	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	598.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	14.54	10.06	11.41	11.66	15.14	14.42	7.64	15.87	16.33	17.57	18.09	4.7
Merged-chr4-88186131-3	chr4	88186038	88186238	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 10 of 43)	intron (NM_001081184, intron 10 of 43)	64098.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	17.77	12.32	6.28	24.13	13.09	12.54	14.28	12.17	13.37	11.55	24.62	12.84
Merged-chr10-39449304-3	chr10	39449190	39449390	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	79491.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	17.77	17.1	24.53	18.9	18.82	21.64	37.2	29.75	9.05	10.04	11.05	6.27
Merged-chr12-57196849-2	chr12	57196731	57196931	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172577, intron 1 of 9)	CpG	641.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	6.46	7.55	1.71	6.44	2.86	9.72	7.64	9.11	1.38	5.52	5.53	2.82
Merged-chr13-63098266-1	chr13	63098166	63098366	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	133373.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	7.67	7.8	5.7	17.29	16.77	8.47	13.95	21.73	0.0	0.0	1.51	0.94
Merged-chr17-88132160-2	chr17	88132067	88132267	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6655.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	6.86	3.27	4.56	5.63	27.41	28.22	19.27	15.36	16.52	13.05	12.06	9.4
Merged-chr15-34306969-3	chr15	34306816	34307016	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358780, intron 1 of 18)	CpG	235.0	NM_016762	17181.0	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	11.31	10.56	1.71	5.63	5.73	3.45	4.65	8.1	4.52	6.53	8.54	5.01
Merged-chr3-81926056-3	chr3	81925941	81926141	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6560.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	17.36	8.3	5.13	10.46	9.82	10.98	2.66	12.64	13.37	13.05	5.53	5.95
Merged-chr18-4987411-2	chr18	4987306	4987506	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59183.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	12.92	6.04	31.38	24.53	17.59	12.23	18.27	24.67	6.88	3.51	14.07	4.39
Merged-chr3-117309093-1	chr3	117308993	117309193	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51783.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	2.42	0.5	1.14	4.83	2.05	2.82	5.98	9.03	1.57	4.52	3.52	3.13
Merged-chr19-57762700-1	chr19	57762600	57762800	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 24 of 28)	intron (NM_181415, intron 24 of 28)	151666.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	3.23	0.0	4.56	1.61	6.55	13.17	7.97	13.21	6.88	9.04	13.57	6.27
Merged-chr18-53850018-1	chr18	53849918	53850118	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-12095.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.04	2.26	1.14	9.65	2.45	3.45	5.31	9.31	0.0	1.0	4.02	0.63
Merged-chr5-43722246-1	chr5	43722146	43722346	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 26 of 37)	intron (NM_001359906, intron 26 of 37)	59867.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	13.09	9.41	6.64	9.64	0.2	0.0	0.0	0.0
Merged-chr11-97357809-1	chr11	97357709	97357909	+	893.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4742.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	3.23	3.02	3.42	1.61	3.68	3.14	0.66	3.5	21.24	21.09	11.56	4.07
Merged-chr2-129911665-1	chr2	129911565	129911765	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100675.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	4.04	4.53	6.85	9.65	8.18	3.76	2.99	7.96	5.7	3.51	16.08	3.45
Merged-chr2-120666764-1	chr2	120666664	120666864	+	893.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57169.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.25	4.78	3.42	2.41	4.09	13.8	3.99	1.91	14.55	12.55	4.02	0.94
Merged-chr1-139065439-3	chr1	139065327	139065527	+	892.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	87770.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	23.02	8.05	21.11	21.32	12.68	12.54	13.95	34.18	11.41	15.06	12.56	14.41
Merged-chr10-79852410-3	chr10	79852331	79852531	+	892.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-2001.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	8.08	9.31	15.4	15.28	18.82	12.54	18.27	13.63	18.29	24.1	13.57	20.36
Merged-chr17-25874916-3	chr17	25874837	25875037	+	892.9404910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	-563.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	11.71	10.82	4.56	11.26	10.64	15.05	4.32	8.8	16.92	12.05	8.54	11.59
Merged-chr3-115793514-3	chr3	115793447	115793647	+	892.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78492.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	11.71	3.77	16.54	15.28	12.68	16.31	23.25	23.33	11.01	12.05	21.61	5.01
Merged-chr4-12140288-3	chr4	12140190	12140390	+	892.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028226, exon 1 of 3)	5' UTR (NM_028226, exon 1 of 3)	173.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	18.57	16.1	19.4	7.64	14.73	16.62	16.61	9.2	9.05	22.59	15.07	7.52
Merged-chr5-74704589-3	chr5	74704488	74704688	+	892.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1685.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	17.36	17.36	4.56	8.45	46.23	65.22	36.21	59.47	15.54	15.57	32.16	9.08
Merged-chr5-43102199-3	chr5	43102102	43102302	+	892.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131261.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	13.73	11.57	19.4	14.48	18.0	14.42	30.56	42.06	32.26	28.62	40.7	7.83
Merged-chr10-99266241-5	chr10	99266139	99266339	+	892.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026268, exon 3 of 3)	exon (NM_026268, exon 3 of 3)	3008.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.27	8.3	5.7	13.27	13.09	12.23	11.63	14.8	8.06	20.08	14.07	7.83
Merged-chr19-47395654-3	chr19	47395552	47395752	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	68759.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	19.38	17.1	11.98	10.05	20.86	18.81	9.63	19.4	17.11	13.05	15.58	6.58
Merged-chr2-120432178-3	chr2	120432083	120432283	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172672, intron 10 of 23)	HAL1|LINE|L1	-28067.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	18.57	10.56	37.65	16.09	6.95	16.62	8.3	18.9	21.05	6.03	15.58	18.48
Merged-chr14-27042473-3	chr14	27042373	27042573	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	3472.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	17.77	9.81	11.98	8.85	8.59	12.54	10.3	16.04	16.52	16.07	29.65	11.9
Merged-chr16-48992952-3	chr16	48992839	48993039	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1173.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	3.23	17.1	7.42	10.86	12.68	16.31	16.94	21.2	15.93	10.54	20.1	13.47
Merged-chr8-108817398-1	chr8	108817298	108817498	+	892.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	102754.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	15.75	3.27	5.13	6.44	11.86	12.23	8.97	8.97	2.75	4.02	6.53	0.0
Merged-chr15-100604704-2	chr15	100604557	100604757	+	892.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4673.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	6.06	7.04	10.84	5.23	11.86	15.05	1.99	10.18	11.6	4.02	7.03	15.35
Merged-chr5-123895368-1	chr5	123895268	123895468	+	892.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-11907.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.81	2.77	0.0	0.0	0.0	0.0	0.0	0.0	13.77	23.6	12.56	10.96
Merged-chr12-40520047-3	chr12	40519983	40520183	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	74030.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.83	8.3	10.84	14.08	12.68	10.35	16.28	11.69	16.52	10.54	15.07	8.14
Merged-chr13-51837529-3	chr13	51837410	51837610	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9165.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	10.09	12.32	25.1	17.7	14.73	14.11	23.25	21.39	14.16	14.56	11.56	14.1
Merged-chr2-154687035-3	chr2	154686936	154687136	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30010.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	12.52	11.82	25.1	12.07	13.09	13.48	9.3	14.22	19.08	15.06	23.11	11.59
Merged-chrX-107150811-3	chrX	107150709	107150909	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175442, intron 1 of 1)	intron (NM_175442, intron 1 of 1)	1194.0	NM_175442	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	12.52	18.61	11.98	13.67	30.68	27.28	20.26	21.56	32.45	16.57	37.69	10.34
Merged-chr5-72223103-3	chr5	72223004	72223204	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	19761.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	13.33	5.79	10.27	17.29	17.18	19.76	28.23	22.32	18.88	28.12	28.64	23.81
Merged-chr5-118095684-3	chr5	118095633	118095833	+	892.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	59725.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	4.44	13.58	10.27	9.25	10.23	15.05	7.97	10.74	7.47	5.02	14.07	5.33
Merged-chr16-15986458-4	chr16	15986325	15986525	+	892.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	99139.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	16.96	16.6	13.69	14.88	11.45	10.66	3.99	3.25	9.83	5.52	15.07	7.52
Merged-chr19-4059021-6	chr19	4058996	4059196	+	892.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362043, intron 1 of 5)	intron (NM_001362043, intron 1 of 5)	351.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	11.71	19.62	8.56	11.66	24.14	22.26	8.97	8.55	15.34	13.05	12.06	9.4
Merged-chr19-10949785-3	chr19	10949680	10949880	+	892.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-514.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	21.0	13.83	10.84	13.67	9.41	9.41	6.64	10.99	19.47	6.03	9.55	9.08
Merged-chr13-24758513-3	chr13	24758426	24758626	+	892.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020567, intron 2 of 6)	MTD|LTR|ERVL-MaLR	3411.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	11.31	7.8	14.26	10.46	16.77	20.07	16.61	16.65	19.28	26.61	22.61	8.14
Merged-chr8-120324796-3	chr8	120324734	120324934	+	892.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96604.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	9.69	16.1	9.13	24.53	9.82	11.92	11.63	11.75	22.62	19.58	17.08	16.29
Merged-chr17-15803646-3	chr17	15803567	15803767	+	892.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22919.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	23.42	15.34	11.98	23.73	9.82	6.9	17.94	23.5	15.14	18.58	13.06	10.34
Merged-chr6-5509448-1	chr6	5509348	5509548	+	892.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13170.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	4.44	6.29	9.7	5.63	10.64	3.45	23.25	23.36	6.88	6.53	9.55	6.89
Merged-chr10-44858891-3	chr10	44858788	44858988	+	892.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208326.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	7.27	13.83	30.23	11.26	18.82	22.58	16.94	29.83	19.47	13.05	58.29	30.7
Merged-chr8-46852556-3	chr8	46852430	46852630	+	892.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	112785.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.63	4.78	12.55	13.67	5.32	5.96	11.63	22.01	8.65	10.54	17.59	7.21
Merged-chr13-64248592-3	chr13	64248493	64248693	+	892.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045798)	promoter-TSS (NR_045798)	-55.0	NM_001122989	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	15.34	8.8	7.99	11.66	19.23	15.37	18.93	27.17	21.05	23.6	27.64	6.27
Merged-chr8-122585547-1	chr8	122585447	122585647	+	892.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193645, intron 9 of 11)	intron (NM_001193645, intron 9 of 11)	-8640.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	4.04	5.03	2.28	0.8	11.05	12.23	10.96	10.82	5.11	4.52	2.51	9.4
Merged-chr1-88282442-2	chr1	88282290	88282490	+	892.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4811.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	2.83	4.53	4.56	4.02	5.32	5.64	5.65	4.09	7.87	6.53	8.04	6.58
Merged-chr12-17712122-2	chr12	17712027	17712227	+	892.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21318.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	8.08	3.52	7.42	14.88	7.77	10.35	8.3	9.11	23.6	13.56	35.68	18.48
Merged-chr17-17883944-3	chr17	17883829	17884029	+	892.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013521)	promoter-TSS (NM_013521)	10.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	9.69	9.56	11.98	16.89	15.96	22.89	6.64	10.23	19.67	16.07	33.16	8.14
Merged-chr6-97394692-3	chr6	97394598	97394798	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	L1MEc|LINE|L1	64588.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.88	12.83	17.11	8.04	30.27	30.42	20.26	21.59	22.62	24.1	39.7	10.34
Merged-chr9-35199373-3	chr9	35199282	35199482	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177845, intron 1 of 6)	intron (NM_001177845, intron 1 of 6)	523.0	NM_001177847	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	16.96	13.33	8.56	9.65	9.82	19.44	9.97	18.56	19.67	14.56	12.56	11.9
Merged-chr13-9261946-3	chr13	9261849	9262049	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14576.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	8.88	6.54	29.09	15.69	25.36	27.28	24.91	37.68	19.67	15.06	18.09	14.41
Merged-chr10-70181606-3	chr10	70181511	70181711	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23053.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	16.96	13.58	16.54	12.07	13.09	9.41	9.63	12.2	23.6	13.56	18.09	6.58
Merged-chr1-64797411-3	chr1	64797316	64797516	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-59666.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	7.27	11.07	14.26	15.69	19.23	17.25	14.95	25.4	13.37	14.56	15.07	11.9
Merged-chr6-145115608-3	chr6	145115507	145115707	+	892.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281981)	promoter-TSS (NM_001281981)	-29.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	13.33	8.8	7.99	13.67	13.5	19.76	7.97	15.76	61.56	48.2	108.54	40.1
Merged-chr9-14641878-3	chr9	14641757	14641957	+	892.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21165.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	8.48	15.59	6.28	18.5	7.36	31.36	18.27	13.6	19.67	19.08	34.67	10.96
Merged-chr10-10480954-3	chr10	10480853	10481053	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-8639.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	8.48	8.05	6.28	10.05	17.18	6.9	15.28	11.78	35.21	20.59	20.6	22.56
Merged-chr8-54507916-3	chr8	54507824	54508024	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22074.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	15.34	12.83	21.68	16.49	13.09	11.29	13.62	27.62	21.44	7.53	19.09	16.29
Merged-chr17-17619246-3	chr17	17619150	17619350	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	5239.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	9.69	7.8	21.68	15.28	31.5	31.36	17.94	25.01	46.22	50.21	42.21	26.63
Merged-chr6-38967400-3	chr6	38967322	38967522	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	ORR1D2|LTR|ERVL-MaLR	48436.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	8.88	5.03	6.85	13.67	11.86	4.08	15.94	20.78	14.55	8.54	21.1	12.84
Merged-chr11-118222560-3	chr11	118222455	118222655	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9813.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	12.11	6.54	9.7	14.08	19.64	11.6	14.95	24.98	11.6	7.03	12.56	18.17
Merged-chr14-45661546-2	chr14	45661477	45661677	+	892.5499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3434.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.25	1.76	3.99	4.02	11.05	6.27	7.97	8.89	8.06	15.57	10.55	5.95
Merged-chr7-35051719-3	chr7	35051622	35051822	+	892.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	4844.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	26.25	10.06	9.7	31.77	44.59	17.56	26.91	33.2	29.7	13.05	52.26	20.36
Merged-chr3-62159243-3	chr3	62159158	62159358	+	892.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-179519.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	48.05	42.76	39.93	44.64	19.64	21.32	12.62	0.11	13.96	17.07	15.07	33.21
Merged-chr17-63402371-3	chr17	63402276	63402476	+	892.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	L1MDa|LINE|L1	-89403.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	16.56	23.9	27.95	11.26	7.77	26.65	14.28	5.66	24.78	22.59	19.09	8.77
Merged-chr6-83652218-2	chr6	83652117	83652317	+	892.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	3899.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.65	2.52	13.69	12.87	16.36	4.7	24.25	24.73	5.11	2.51	16.58	7.83
Merged-chr2-79048885-3	chr2	79048794	79048994	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	179216.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	20.59	12.83	15.4	11.26	12.27	27.59	8.64	15.2	21.05	32.64	25.12	8.77
Merged-chr11-58126798-3	chr11	58126627	58126827	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166669, intron 24 of 27)	intron (NM_001166669, intron 24 of 27)	22498.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	33.11	30.43	42.21	39.82	46.64	47.98	30.89	30.42	8.65	7.53	10.55	4.07
Merged-chr12-91185787-1	chr12	91185687	91185887	+	892.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	75558.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	4.04	4.02	3.99	2.82	9.82	6.27	5.98	10.51	4.72	3.01	0.5	4.7
Merged-chr15-81934183-3	chr15	81934075	81934275	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2584.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	17.36	5.79	22.82	16.49	18.41	6.9	6.98	22.21	11.21	18.08	7.54	18.17
Merged-chr14-121798471-3	chr14	121798349	121798549	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-715.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	9.69	12.58	11.41	10.46	29.46	33.87	26.57	18.93	19.67	7.03	30.15	16.29
Merged-chr10-43478087-3	chr10	43477976	43478176	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1064.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	12.11	7.04	22.82	6.84	16.36	30.1	21.92	24.98	25.57	8.54	45.73	22.87
Merged-chr8-46639216-3	chr8	46639145	46639345	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009810, exon 7 of 7)	3' UTR (NM_009810, exon 7 of 7)	21954.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	8.48	10.06	11.98	9.25	19.64	10.98	18.93	17.69	10.62	5.52	8.54	19.42
Merged-chr11-43348760-1	chr11	43348660	43348860	+	892.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25701.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	4.44	2.01	1.14	6.03	14.73	7.53	5.31	7.4	7.28	12.05	8.54	5.33
Merged-chr11-114906879-3	chr11	114906789	114906989	+	892.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	16848.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	19.79	9.56	17.11	9.65	35.59	23.83	13.95	13.65	20.46	41.67	11.05	15.98
Merged-chr14-19416674-5	chr14	19416610	19416810	+	892.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	185877.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	11.31	11.32	7.99	4.83	11.05	5.64	9.97	32.94	15.34	27.11	15.58	23.49
Merged-chr17-65663904-3	chr17	65663801	65664001	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-21697.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	8.08	8.55	7.99	11.26	24.55	30.73	20.59	28.57	21.05	35.65	43.72	26.0
Merged-chr13-37657505-3	chr13	37657410	37657610	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168528.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	15.75	8.55	19.4	21.72	13.91	12.23	14.62	16.01	12.0	2.51	9.55	8.46
Merged-chr10-51571395-3	chr10	51571294	51571494	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	19066.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	7.27	4.02	11.41	16.09	15.55	15.05	15.61	18.5	7.87	8.03	17.59	11.59
Merged-chr7-101466912-3	chr7	101466765	101466965	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-8511.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	10.09	7.29	7.99	9.25	10.23	21.64	13.62	17.1	3.15	5.52	6.53	6.27
Merged-chr4-155562939-3	chr4	155562842	155563042	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	561.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	22.61	12.32	11.41	8.04	18.0	14.11	16.28	9.9	15.74	8.54	14.57	15.04
Merged-chr4-134543418-3	chr4	134543314	134543514	+	892.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029100, intron 6 of 11)	intron (NM_029100, intron 6 of 11)	-8027.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	17.77	14.59	15.97	9.65	22.91	8.47	4.32	15.06	15.34	25.61	23.62	7.83
Merged-chr1-176835037-3	chr1	176834937	176835137	+	892.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	1096.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	9.29	10.82	14.83	16.89	14.32	16.31	11.63	13.29	10.03	10.04	15.07	10.34
Merged-chr7-29170258-5	chr7	29170141	29170341	+	892.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	31.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	11.71	10.82	11.41	3.62	6.14	5.64	3.32	6.53	30.29	40.67	25.63	20.68
Merged-chr11-50114536-2	chr11	50114431	50114631	+	892.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	B3|SINE|B2	-16829.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	9.69	5.03	7.99	1.61	19.64	18.19	2.33	6.7	14.55	17.57	27.64	14.72
Merged-chr16-30772987-3	chr16	30772879	30773079	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173256.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	23.82	8.3	20.54	17.29	26.59	12.86	9.3	11.13	17.9	22.59	18.59	9.08
Merged-chr15-58791350-3	chr15	58791267	58791467	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 3 of 6)	intron (NM_175212, intron 3 of 6)	32060.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	13.73	8.55	20.54	16.49	21.27	14.11	7.97	17.5	17.51	13.56	10.05	12.53
Merged-chr18-37998600-3	chr18	37998484	37998684	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205336, intron 1 of 32)	intron (NM_001205336, intron 1 of 32)	385.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	11.31	9.06	9.13	10.46	13.91	12.54	28.57	17.55	7.08	20.08	18.59	5.95
Merged-chr6-39507615-3	chr6	39507506	39507706	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 3 of 18)	intron (NM_172477, intron 3 of 18)	50228.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	7.67	13.08	11.41	16.89	18.0	11.6	19.93	34.18	11.01	5.02	19.09	12.22
Merged-chr7-19239612-3	chr7	19239525	19239725	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	11236.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	13.73	15.85	15.97	10.46	14.73	23.2	6.64	7.68	20.65	26.11	17.08	11.28
Merged-chr17-83335382-3	chr17	83335287	83335487	+	892.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15544.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	16.56	9.56	14.83	17.7	10.23	15.99	17.61	14.58	9.44	13.05	12.56	10.34
Merged-chr2-118554567-3	chr2	118554462	118554662	+	892.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4876.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	11.71	8.8	11.41	10.46	12.68	12.86	4.32	18.79	17.11	13.56	34.67	20.36
Merged-chr2-170307688-3	chr2	170307589	170307789	+	892.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48672.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.27	11.07	18.25	6.84	15.14	7.84	6.31	13.88	17.11	12.55	20.1	10.65
Merged-chr5-103824862-3	chr5	103824751	103824951	+	892.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	70278.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	7.27	11.82	19.97	16.49	5.32	10.66	9.3	11.58	18.49	7.03	29.14	14.72
Merged-chr13-78163202-3	chr13	78163093	78163293	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	33256.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	15.34	12.83	14.26	20.51	4.5	14.42	14.95	14.05	11.41	10.54	23.11	8.14
Merged-chr6-135364557-3	chr6	135364434	135364634	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288628, intron 1 of 5)	intron (NM_001288628, intron 1 of 5)	1603.0	NM_001288628	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	17.36	12.07	14.26	24.94	36.82	42.96	65.11	80.72	9.44	4.52	16.08	9.08
Merged-chr11-73321276-2	chr11	73321175	73321375	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023113, intron 2 of 5)	RLTR45|LTR|ERVK	3362.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	18.17	15.59	5.7	13.27	12.27	10.98	9.3	9.25	13.37	9.04	6.53	5.95
Merged-chr4-86666030-3	chr4	86665967	86666167	+	892.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	MTC|LTR|ERVL-MaLR	3992.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	8.88	4.28	1.71	2.82	5.32	5.96	5.98	7.82	3.34	3.01	10.05	10.02
Merged-chr1-180199680-1	chr1	180199580	180199780	+	892.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-3660.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	5.65	8.05	3.99	0.0	6.14	7.21	1.99	1.82	24.98	15.06	15.07	3.45
Merged-chr1-34843465-1	chr1	34843365	34843565	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001160235)	promoter-TSS (NM_001160235)	-415.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	16.56	12.32	10.27	5.63	5.73	26.03	4.65	7.29	14.55	13.05	7.54	9.08
Merged-chr12-24735336-1	chr12	24735236	24735436	+	892.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	27082.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	7.27	5.79	6.28	6.44	4.09	8.47	7.97	13.09	4.13	4.52	10.05	1.57
Merged-chr4-134918628-3	chr4	134918527	134918727	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-3711.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	11.31	6.04	30.8	16.49	13.91	8.15	26.24	31.71	19.47	7.53	21.61	23.18
Merged-chr5-92511442-3	chr5	92511331	92511531	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5774.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	10.5	11.82	10.27	11.66	21.27	19.76	19.93	16.65	24.39	23.6	23.11	16.29
Merged-chr3-60542552-1	chr3	60542452	60542652	+	892.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	41373.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	10.5	3.52	3.42	7.24	8.59	5.64	9.97	9.76	4.92	6.03	10.05	4.39
Merged-chr2-121179051-3	chr2	121178966	121179166	+	892.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110985, intron 6 of 18)	L1_Mur3|LINE|L1	7898.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	7.67	8.3	22.25	18.1	17.18	16.93	2.66	24.11	18.49	12.05	19.6	15.04
Merged-chr8-115597340-3	chr8	115597218	115597418	+	892.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109576.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	14.54	13.58	11.41	12.07	21.68	17.56	10.63	16.68	26.75	18.08	22.11	10.96
Merged-chr6-83599090-3	chr6	83598984	83599184	+	892.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26580.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	10.5	11.82	16.54	16.09	11.45	11.6	10.96	17.05	14.95	9.54	19.6	10.65
Merged-chr6-136543299-3	chr6	136543202	136543402	+	892.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24451.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	14.13	4.28	14.26	13.67	9.82	12.23	12.62	19.49	25.37	31.13	46.73	23.18
Merged-chr6-114397873-3	chr6	114397755	114397955	+	892.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317126)	promoter-TSS (NM_001317126)	-81.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	14.54	8.3	13.69	14.88	27.41	12.54	15.61	15.5	10.42	14.06	12.56	8.77
Merged-chr18-78048603-3	chr18	78048500	78048700	+	892.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101038, exon 3 of 6)	exon (NM_001101038, exon 3 of 6)	8668.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	12.92	21.38	11.41	8.04	20.05	12.23	7.64	14.36	14.36	17.07	24.12	13.47
Merged-chr5-120527709-3	chr5	120527621	120527821	+	892.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	16529.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	15.75	6.29	17.68	12.07	20.86	26.03	29.56	30.0	22.62	21.59	22.11	8.77
Merged-chr7-47122234-2	chr7	47122137	47122337	+	892.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013643, intron 1 of 13)	intron (NM_013643, intron 1 of 13)	10361.0	NM_001163565	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	14.94	11.32	33.66	20.51	9.41	5.96	9.3	7.65	17.9	6.03	9.04	7.83
Merged-chr8-6144796-2	chr8	6144707	6144907	+	892.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1039520.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	14.94	7.8	17.68	23.73	0.82	0.0	0.0	1.15	12.0	6.53	33.67	18.17
Merged-chr12-76614522-3	chr12	76614424	76614624	+	892.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-66599.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	12.92	13.08	11.98	10.86	11.45	9.41	7.97	7.93	21.05	12.55	7.54	10.02
Merged-chr17-22817710-3	chr17	22817576	22817776	+	892.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030709)	promoter-TSS (NR_030709)	71.0	NR_030709	100042679.0	Mm.484007	NR_030709		Gm16386	EG545191|Gm21017	zinc finger protein 946 pseudogene	pseudo	9.29	9.56	5.7	6.84	14.73	12.86	11.63	7.01	10.82	15.57	19.6	7.21
Merged-chr19-23057067-3	chr19	23056958	23057158	+	892.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84168.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	7.27	9.56	11.98	14.48	42.96	16.93	30.56	43.32	24.78	20.08	53.26	18.48
Merged-chr11-118104179-3	chr11	118104077	118104277	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 19 of 80)	MER74A|LTR|ERVL	25042.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	19.38	7.55	13.12	16.49	27.82	30.73	5.98	19.79	21.05	29.62	45.73	19.42
Merged-chr4-53826763-5	chr4	53826609	53826809	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	664.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	1.21	2.77	10.84	4.42	3.68	3.76	3.32	3.0	4.33	5.02	6.53	4.39
Merged-chr14-115092278-3	chr14	115092220	115092420	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175500, exon 1 of 8)	5' UTR (NM_175500, exon 1 of 8)	105.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	8.48	12.32	12.55	12.47	18.41	20.7	38.2	24.08	12.59	6.03	12.06	8.77
Merged-chr8-83064271-3	chr8	83064159	83064359	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-101093.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	10.9	11.32	6.28	14.08	20.46	12.54	12.95	16.57	45.04	50.21	44.22	36.34
Merged-chr13-92986071-2	chr13	92985975	92986175	+	892.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87229.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	12.92	8.8	15.97	14.48	0.0	2.82	0.33	3.17	27.93	21.59	35.17	20.05
Merged-chr10-128546438-3	chr10	128546277	128546477	+	892.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1367.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	4.44	5.79	4.56	6.44	4.91	6.27	3.32	2.75	11.41	8.54	10.55	11.28
Merged-chr19-17250215-5	chr19	17250066	17250266	+	892.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89339.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	10.9	6.54	3.99	4.42	12.68	13.17	4.32	5.83	5.31	11.05	10.05	7.52
Merged-chr10-117432606-3	chr10	117432517	117432717	+	892.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14818.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	12.11	17.36	15.4	9.65	19.23	14.42	13.95	10.85	16.33	15.06	14.07	13.47
Merged-chr9-106858232-3	chr9	106858138	106858338	+	892.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001015507, exon 14 of 23)	exon (NM_001015507, exon 14 of 23)	28762.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	10.9	14.84	19.97	12.87	8.18	9.41	9.3	18.5	13.37	7.53	24.12	20.36
Merged-chr1-75254422-3	chr1	75254335	75254535	+	892.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359281, intron 12 of 22)	intron (NM_001359281, intron 12 of 22)	9336.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	17.36	11.32	9.13	15.28	15.14	19.13	15.94	16.91	21.05	13.56	23.11	10.34
Merged-chr15-74955361-6	chr15	74955239	74955439	+	892.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164036, exon 1 of 4)	5' UTR (NM_001164036, exon 1 of 4)	233.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.86	4.28	3.42	7.64	4.5	3.14	13.62	6.87	4.33	5.02	6.03	9.4
Merged-chr12-81860253-3	chr12	81860152	81860352	+	892.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018814, exon 1 of 36)	5' UTR (NM_018814, exon 1 of 36)	222.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	12.11	10.82	4.56	9.65	8.18	10.03	5.31	9.59	14.36	15.06	8.54	10.02
Merged-chr13-42576203-3	chr13	42576014	42576214	+	892.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104685.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.65	5.03	4.56	8.04	3.68	7.21	8.97	1.93	5.9	5.02	5.02	3.45
Merged-chr3-121967853-3	chr3	121967889	121968089	+	892.085693	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356524, intron 1 of 22)	intron (NM_001356524, intron 1 of 22)	183.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.63	3.52	4.56	4.42	12.68	6.9	19.93	10.57	9.24	13.05	11.05	6.27
Merged-chr17-72788219-2	chr17	72788120	72788320	+	892.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-48408.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	7.27	5.53	2.85	16.89	12.68	14.11	7.31	13.21	11.41	3.51	17.59	8.77
Merged-chr15-80054231-3	chr15	80054136	80054336	+	892.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24343.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	7.67	9.81	11.41	18.5	29.86	36.69	25.58	27.08	32.45	42.68	55.78	17.86
Merged-chr13-9776082-3	chr13	9776032	9776232	+	892.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10811.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.23	9.56	7.42	11.26	8.59	6.27	4.65	10.07	12.78	11.05	9.55	12.22
Merged-chr4-44014939-3	chr4	44014847	44015047	+	892.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	2297.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	19.38	14.09	27.38	37.0	20.46	8.78	19.27	26.3	10.82	7.03	14.57	7.52
Merged-chr14-47647132-3	chr14	47647021	47647221	+	892.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2190.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	19.79	31.94	26.24	28.15	29.46	32.93	10.96	15.53	31.08	11.05	19.6	7.83
Merged-chr3-96501578-3	chr3	96501483	96501683	+	892.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-23602.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	13.33	5.28	11.98	14.08	18.41	13.48	7.64	10.96	22.03	14.06	10.55	21.3
Merged-chr5-123139153-3	chr5	123139037	123139237	+	892.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3056.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	19.38	19.62	3.42	10.05	11.05	15.37	5.65	11.83	23.01	16.57	28.14	15.98
Merged-chr11-32650575-3	chr11	32650500	32650700	+	892.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	8045.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	14.13	9.06	14.83	13.67	16.77	19.44	7.64	11.52	21.44	18.58	25.12	14.1
Merged-chr5-105148239-3	chr5	105148143	105148343	+	892.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8657.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	14.54	15.34	16.54	15.69	18.41	18.81	5.31	8.1	37.17	44.69	17.59	17.86
Merged-chr14-10430104-3	chr14	10430016	10430216	+	892.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	23342.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	16.96	11.07	11.98	15.28	9.82	15.68	15.28	18.93	23.41	15.57	30.65	14.41
Merged-chr5-115533796-3	chr5	115533665	115533865	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25702.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	13.33	10.31	6.85	16.09	11.86	17.56	14.28	12.81	13.57	7.03	10.05	10.02
Merged-chr14-104547452-2	chr14	104547359	104547559	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24793.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	4.44	5.79	4.56	5.23	10.64	9.72	12.62	17.89	14.95	8.54	16.08	11.9
Merged-chr17-26231218-3	chr17	26231111	26231311	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13031.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	14.54	8.8	11.41	14.88	13.09	16.93	7.64	16.32	23.6	19.58	20.1	20.68
Merged-chr1-61772211-1	chr1	61772111	61772311	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	133387.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	7.27	0.5	1.14	2.41	7.77	3.45	9.97	6.08	3.15	3.01	6.03	7.52
Merged-chr2-50888119-1	chr2	50888019	50888219	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-21565.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	8.88	6.04	1.71	18.9	6.95	3.45	12.62	11.97	3.74	3.51	6.03	3.45
Merged-chr8-122160330-1	chr8	122160230	122160430	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121811.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	8.08	4.02	1.71	3.22	4.5	4.08	7.31	7.74	0.39	0.0	1.51	1.88
Merged-chr12-17777195-2	chr12	17777091	17777291	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86382.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.85	5.79	6.85	2.41	10.64	7.53	3.65	2.69	32.65	35.15	30.65	13.16
Merged-chr2-171358359-1	chr2	171358259	171358459	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	604440.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	2.83	3.77	4.56	5.63	6.55	1.88	5.98	15.84	4.33	1.0	9.04	10.34
Merged-chr14-120360415-1	chr14	120360315	120360515	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53963.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.02	1.51	4.56	5.63	9.82	2.51	1.33	9.28	3.54	6.03	3.52	3.45
Merged-chr1-23915615-2	chr1	23915518	23915718	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	RSINE1|SINE|B4	-5882.0	NM_001290683	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.23	2.01	1.14	4.02	4.91	6.59	9.97	21.28	38.55	17.07	54.77	23.81
Merged-chr11-117117438-1	chr11	117117338	117117538	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	2266.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	2.02	0.5	0.0	1.61	8.59	5.33	0.0	7.37	5.9	3.01	2.51	2.82
Merged-chr9-104339206-1	chr9	104339106	104339306	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1484.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	6.46	5.79	3.99	6.03	11.86	8.78	13.29	11.66	5.11	7.03	10.55	6.89
Merged-chr12-3852800-1	chr12	3852700	3852900	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	9444.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	2.42	6.04	3.42	11.66	3.27	6.9	6.31	2.61	5.11	3.51	2.51	3.13
Merged-chr10-26695677-1	chr10	26695577	26695777	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21026.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.42	4.53	2.28	6.44	4.91	8.15	3.65	10.93	4.92	6.03	7.03	3.13
Merged-chr3-41905837-2	chr3	41905736	41905936	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	163218.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	1.51	0.0	0.8	33.14	36.69	59.46	76.37	12.19	12.05	32.16	10.65
Merged-chr2-3487434-1	chr2	3487334	3487534	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-12448.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0.0	0.0	5.13	3.22	6.55	18.19	23.25	0.0	0.79	2.01	4.02	0.0
Merged-chrX-85290033-1	chrX	85289933	85290133	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40356.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	7.27	6.79	2.28	5.63	13.5	5.96	6.98	18.11	4.33	3.51	5.02	2.51
Merged-chr17-29032076-1	chr17	29031976	29032176	+	892.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-584.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	6.06	10.56	10.84	10.86	8.59	8.47	7.97	9.17	13.77	13.56	14.57	15.04
Merged-chr10-4086029-1	chr10	4085929	4086129	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 21 of 27)	MTEa|LTR|ERVL-MaLR	112954.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	1.62	0.0	0.0	0.8	2.45	3.45	5.65	1.99	0.79	3.01	2.01	0.63
Merged-chr13-96437156-1	chr13	96437056	96437256	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042714, intron 7 of 13)	MLT1H1|LTR|ERVL-MaLR	34004.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	2.01	0.0	1.61	11.05	3.14	4.65	8.69	0.98	2.01	4.52	3.76
Merged-chr7-82691618-3	chr7	82691539	82691739	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175317, intron 12 of 19)	intron (NM_175317, intron 12 of 19)	43025.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	6.06	12.07	31.38	27.75	10.23	3.14	7.97	25.21	13.57	11.55	22.61	10.65
Merged-chr1-191086299-1	chr1	191086199	191086399	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-12115.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	25.44	11.57	15.97	10.46	17.59	14.74	13.62	10.32	17.51	12.55	14.57	9.08
Merged-chr10-121498128-3	chr10	121497997	121498197	+	891.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21847.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.06	9.31	11.98	14.88	12.27	18.5	15.61	22.07	7.67	10.04	18.09	6.58
Merged-chr3-50443705-3	chr3	50443629	50443829	+	891.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-116.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	14.94	11.82	19.4	8.45	9.41	25.71	31.89	19.96	18.1	13.56	16.08	10.34
Merged-chr15-83040186-4	chr15	83040139	83040339	+	891.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6842.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	2.83	1.01	5.7	0.8	5.73	3.45	2.33	1.04	2.95	3.51	1.0	5.64
Merged-chr6-72164462-3	chr6	72164363	72164563	+	891.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41266.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	10.9	10.31	17.68	11.26	19.64	9.09	13.95	36.25	11.6	10.54	16.58	11.28
Merged-chr6-71235313-3	chr6	71235218	71235418	+	891.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	26963.0	NM_001160127	12180.0	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	7.27	5.53	10.27	9.65	19.23	11.92	22.59	37.63	21.44	6.53	19.6	22.56
Merged-chr2-30496003-3	chr2	30495900	30496100	+	891.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21801.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	8.08	9.81	9.13	8.45	20.46	20.7	8.64	18.34	24.39	34.14	43.21	25.06
Merged-chr2-164520933-3	chr2	164520818	164521018	+	891.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23393.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	21.8	24.4	23.39	16.49	23.73	21.32	11.96	13.85	6.69	9.04	13.57	16.29
Merged-chr3-27461265-3	chr3	27461167	27461367	+	891.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 18 of 26)	intron (NM_001356953, intron 18 of 26)	89916.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	13.33	9.31	14.83	21.32	11.86	18.19	3.99	19.46	14.16	24.6	19.6	15.66
Merged-chr13-93355257-3	chr13	93355110	93355310	+	891.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147176, intron 4 of 9)	intron (NM_147176, intron 4 of 9)	47176.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	8.88	7.8	14.26	14.08	8.59	7.21	12.62	18.42	8.26	6.53	8.54	6.58
Merged-chr10-127535383-5	chr10	127535231	127535431	+	891.883301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	-772.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.85	17.86	9.13	12.87	12.27	18.19	7.64	6.14	6.88	11.05	16.58	10.34
Merged-chr11-43600115-3	chr11	43600023	43600223	+	891.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008375, intron 1 of 3)	intron (NM_008375, intron 1 of 3)	1439.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	14.94	10.06	29.66	18.5	5.32	3.76	8.97	14.55	17.7	10.04	11.05	15.04
Merged-chr11-6391752-3	chr11	6391640	6391840	+	891.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3385.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	17.77	22.39	23.39	15.28	20.46	34.81	7.64	6.17	31.67	40.17	23.62	13.47
Merged-chr2-84267003-1	chr2	84266903	84267103	+	891.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	158263.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.42	0.75	3.99	3.62	4.09	3.14	1.0	2.52	24.0	11.55	36.18	17.86
Merged-chr1-135730447-3	chr1	135730299	135730499	+	891.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	1232.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.04	9.81	6.85	2.82	6.14	23.83	12.29	14.61	29.7	20.59	37.18	7.21
Merged-chr11-103374119-3	chr11	103374006	103374206	+	891.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-10414.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	9.69	11.32	14.26	10.86	11.45	5.96	8.3	22.07	6.49	6.03	20.6	11.9
Merged-chr3-8986066-3	chr3	8985976	8986176	+	891.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	18128.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.48	14.84	26.24	18.9	13.5	10.03	19.93	31.68	9.64	9.04	16.08	12.22
Merged-chr2-120424450-1	chr2	120424350	120424550	+	891.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20334.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	4.04	7.04	4.56	0.8	17.59	4.39	9.63	9.5	4.92	5.02	7.03	6.58
Merged-chr11-107322925-3	chr11	107322827	107323027	+	891.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	MTEb|LTR|ERVL-MaLR	-133546.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.27	20.88	13.69	10.05	15.55	13.48	3.65	8.41	23.6	17.57	14.57	12.84
Merged-chr3-55227158-3	chr3	55227130	55227330	+	891.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15134.0	NM_019978	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.4	3.77	13.69	8.04	11.45	4.7	9.63	18.31	22.62	14.56	28.64	13.78
Merged-chr15-62351535-3	chr15	62351437	62351637	+	891.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132086.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	16.56	10.31	6.85	10.86	19.23	13.8	8.97	18.31	22.62	12.05	26.13	12.84
Merged-chr8-35792165-4	chr8	35792027	35792227	+	891.764282	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	34432.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	7.67	6.04	7.42	6.44	10.64	16.62	9.97	11.21	15.93	7.53	12.56	17.54
Merged-chr18-57085542-4	chr18	57085394	57085594	+	891.7604369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47596.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	6.46	6.04	6.28	6.84	6.55	3.76	10.96	5.24	7.67	7.53	4.52	3.13
Merged-chr15-12667927-2	chr15	12667833	12668033	+	891.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75377.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	4.85	13.58	23.96	25.74	12.27	3.76	7.97	6.56	3.34	1.51	2.01	5.64
Merged-chr6-114838118-3	chr6	114838021	114838221	+	891.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	MTD|LTR|ERVL-MaLR	83700.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	9.69	14.34	9.7	10.86	12.27	12.86	6.31	8.38	13.37	18.58	23.62	12.84
Merged-chr5-30135308-1	chr5	30135208	30135408	+	891.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178878, intron 7 of 19)	MTC|LTR|ERVL-MaLR	19672.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	9.69	2.01	6.85	9.25	15.55	6.27	11.96	14.8	14.36	4.02	3.52	4.7
Merged-chr13-73600370-3	chr13	73600275	73600475	+	891.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3627.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	9.69	13.58	18.83	14.88	7.77	8.78	12.62	16.04	13.18	17.57	22.61	14.41
Merged-chr14-17967468-3	chr14	17967351	17967551	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-14193.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	10.5	12.83	15.97	18.5	13.91	18.81	24.25	21.56	16.33	10.54	29.14	9.08
Merged-chr16-76200452-3	chr16	76200351	76200551	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77838.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	14.94	11.32	13.12	1.61	11.45	11.6	5.98	10.29	16.13	6.03	15.58	8.77
Merged-chr7-45117719-3	chr7	45117606	45117806	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4051.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	5.65	16.35	11.41	12.07	3.27	8.47	13.29	10.82	22.03	11.55	21.61	13.16
Merged-chr2-166012451-3	chr2	166012348	166012548	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	19811.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	18.17	9.56	21.68	20.91	13.5	6.27	18.93	10.49	12.39	8.54	9.04	9.4
Merged-chr9-47712667-6	chr9	47712645	47712845	+	891.671997	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	105463.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	12.92	5.28	8.56	9.25	17.18	11.29	8.97	8.19	11.21	14.06	15.58	8.14
Merged-chr1-40224988-3	chr1	40224890	40225090	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008362)	promoter-TSS (NM_008362)	-90.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	14.54	10.06	33.09	25.74	13.5	24.46	19.27	28.15	12.59	9.54	14.07	10.34
Merged-chr12-21543408-3	chr12	21543323	21543523	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-125987.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	24.23	23.64	21.11	19.71	40.5	31.98	46.84	39.7	10.42	6.03	15.58	8.46
Merged-chr10-77130747-3	chr10	77130643	77130843	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009929, intron 2 of 41)	intron (NM_009929, intron 2 of 41)	-17038.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	13.73	3.02	8.56	12.07	4.5	2.2	7.97	13.07	15.34	20.08	8.04	6.58
Merged-chr8-11138430-1	chr8	11138330	11138530	+	891.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-130000.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	1.62	5.03	5.7	7.64	4.91	10.03	13.29	23.19	5.7	5.52	7.03	8.14
Merged-chr16-91538703-2	chr16	91538615	91538815	+	891.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8379.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	2.42	0.75	11.98	5.63	9.82	4.08	5.98	7.63	12.78	15.57	29.65	18.8
Merged-chr2-102887256-3	chr2	102887169	102887369	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14396.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.92	16.6	18.83	10.05	22.5	24.46	20.93	16.82	30.68	34.14	15.58	11.28
Merged-chr10-58523053-3	chr10	58522949	58523149	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 6 of 15)	L1Md_F2|LINE|L1	25112.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	11.31	13.08	12.55	10.46	11.86	36.06	10.96	13.96	43.86	31.13	33.67	26.0
Merged-chr2-133444933-3	chr2	133444833	133445033	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107226.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	11.31	8.8	16.54	6.44	14.73	10.03	20.26	25.07	10.82	5.02	14.07	9.08
Merged-chr19-42131319-3	chr19	42131222	42131422	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2329.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	21.8	16.6	17.11	6.84	18.82	35.75	17.94	14.19	11.01	23.6	13.57	8.14
Merged-chr1-139467926-2	chr1	139467827	139468027	+	891.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009791, exon 8 of 28)	exon (NM_009791, exon 8 of 28)	13154.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	6.86	5.79	22.82	8.85	15.96	11.29	28.9	39.5	14.75	25.61	27.64	8.46
Merged-chr1-171554126-2	chr1	171554036	171554236	+	891.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5057.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	9.29	11.57	11.98	8.85	18.41	22.26	15.94	16.85	2.56	2.01	1.0	0.31
Merged-chr10-54052634-3	chr10	54052549	54052749	+	891.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	23147.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	44.42	40.5	23.96	11.66	22.09	48.6	16.28	19.71	45.63	37.66	35.17	9.71
Merged-chr1-37344584-1	chr1	37344484	37344684	+	891.625	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-24633.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	1.62	2.26	5.13	5.63	4.09	4.7	14.28	6.06	2.36	1.0	1.0	1.57
Merged-chr10-14131219-3	chr10	14131119	14131319	+	891.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164840.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.88	11.57	19.97	12.47	12.68	12.54	19.27	21.84	14.95	11.05	17.08	14.1
Merged-chr17-69079510-3	chr17	69079418	69079618	+	891.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	3841.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	13.73	22.89	26.81	6.84	19.64	30.73	11.96	17.92	25.18	20.59	23.62	9.4
Merged-chr19-6062156-3	chr19	6062003	6062203	+	891.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028454)	TTS (NM_028454)	896.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	6.46	8.3	3.99	4.02	11.05	5.02	5.31	7.99	10.82	6.03	3.01	17.23
Merged-chr6-94283876-3	chr6	94283718	94283918	+	891.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	99.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	25.04	20.37	10.84	35.8	81.0	81.84	86.7	97.29	7.47	13.56	19.6	9.71
Merged-chr2-153492656-3	chr2	153492536	153492736	+	891.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	CpG	37335.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	12.11	13.08	5.13	7.64	25.77	13.17	18.93	16.04	19.28	10.54	22.61	7.83
Merged-chr2-160021725-3	chr2	160021637	160021837	+	891.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	5084.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	28.27	16.1	12.55	25.74	28.64	10.03	32.55	35.78	15.74	21.09	12.06	15.35
Merged-chr10-62549952-3	chr10	62549834	62550034	+	891.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22489.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	21.4	15.09	10.27	12.07	8.59	26.03	11.29	10.77	30.68	29.12	32.66	15.98
Merged-chr2-70877522-3	chr2	70877410	70877610	+	891.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52030.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.46	13.58	11.41	10.86	13.09	7.84	14.95	16.26	7.47	19.58	20.1	13.47
Merged-chr12-85169548-3	chr12	85169432	85169632	+	891.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271705, exon 5 of 7)	exon (NM_001271705, exon 5 of 7)	6450.0	NM_001271705	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	9.29	9.81	9.13	6.84	2.05	10.03	15.94	6.81	14.16	20.59	7.54	10.96
Merged-chr12-116433915-3	chr12	116433806	116434006	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 16 of 28)	intron (NM_133762, intron 16 of 28)	28504.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	22.21	18.36	5.13	8.45	9.0	5.64	9.3	11.72	73.17	69.79	87.43	61.71
Merged-chr1-34479306-2	chr1	34479167	34479367	+	891.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19145.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	6.06	6.79	7.42	3.62	2.86	5.02	5.65	8.55	3.93	8.54	5.02	11.28
Merged-chr7-19676921-2	chr7	19676836	19677036	+	891.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277944, intron 1 of 4)	intron (NM_001277944, intron 1 of 4)	1005.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	4.44	4.78	21.68	0.0	18.82	16.62	15.61	13.63	18.88	13.05	13.57	4.39
Merged-chr4-106316612-3	chr4	106316525	106316725	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183225, exon 1 of 68)	exon (NM_183225, exon 1 of 68)	412.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	9.29	10.82	12.55	13.67	16.36	5.64	11.96	6.59	11.01	4.52	9.04	13.16
Merged-chr8-116992783-2	chr8	116992676	116992876	+	891.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	673.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	11.71	4.53	4.56	4.83	8.59	15.05	4.65	11.5	9.64	5.52	14.07	10.34
Merged-chr2-156324878-1	chr2	156324778	156324978	+	891.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 2 of 12)	RMER21B|LTR|ERV1	-12174.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	8.88	4.28	4.56	3.22	1.64	0.63	2.99	1.85	9.64	14.06	17.08	10.02
Merged-chr10-111516294-4	chr10	111516131	111516331	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9945.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	8.08	8.55	17.68	11.66	17.18	9.41	23.58	22.71	14.75	12.05	22.11	17.86
Merged-chr11-84117590-3	chr11	84117486	84117686	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172562, intron 4 of 15)	ORR1D1|LTR|ERVL-MaLR	11982.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	4.85	8.05	17.11	8.04	32.73	33.55	22.26	23.3	38.35	21.09	46.73	25.69
Merged-chr6-97487403-2	chr6	97487321	97487521	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	399.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	12.92	10.82	11.41	9.65	19.23	20.07	15.28	10.01	16.92	14.06	30.65	11.28
Merged-chr4-105157451-5	chr4	105157331	105157531	+	891.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080555)	promoter-TSS (NM_080555)	84.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	16.15	15.09	16.54	20.91	12.27	4.39	6.64	12.87	13.57	8.54	19.09	6.89
Merged-chr1-121334487-3	chr1	121334389	121334589	+	891.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1900.0	NM_178082	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.23	6.79	15.4	16.89	20.86	12.86	18.93	35.69	16.13	10.04	30.65	13.78
Merged-chr14-52019012-3	chr14	52018909	52019109	+	891.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033805, intron 6 of 6)	intron (NM_001033805, intron 6 of 6)	704.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	6.86	6.29	23.96	7.64	12.68	16.93	5.65	16.96	25.18	21.09	29.65	15.04
Merged-chr11-67526752-3	chr11	67526676	67526876	+	891.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6222.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	7.67	8.55	23.39	9.65	16.77	11.6	13.29	11.94	35.4	33.64	37.18	21.93
Merged-chr5-29892523-3	chr5	29892414	29892614	+	891.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120600.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	26.65	9.56	18.25	16.09	15.55	15.05	13.95	15.31	17.31	11.05	22.11	10.65
Merged-chr18-6135255-2	chr18	6135164	6135364	+	891.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039692, intron 1 of 18)	intron (NM_001039692, intron 1 of 18)	834.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	17.36	12.32	13.12	10.05	8.59	5.02	10.96	11.05	15.93	6.53	10.55	15.04
Merged-chr15-50869638-3	chr15	50869553	50869753	+	891.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	CpG	19396.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	11.31	14.34	10.27	12.87	15.55	17.56	17.94	12.7	13.57	16.07	16.08	5.95
Merged-chr18-5401696-3	chr18	5401603	5401803	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66896.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	12.11	17.61	25.67	20.51	22.5	27.28	9.63	33.2	20.46	7.53	14.57	6.27
Merged-chr10-118121248-3	chr10	118121163	118121363	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20524.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.27	5.03	8.56	9.25	14.32	18.5	9.63	16.88	17.7	11.55	35.17	11.59
Merged-chr1-92179788-3	chr1	92179699	92179899	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 1 of 26)	CpG	542.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	11.71	8.8	11.41	10.05	20.05	11.6	4.65	15.53	11.6	7.03	21.1	10.65
Merged-chr18-82751392-3	chr18	82751326	82751526	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7613.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	8.48	4.53	6.85	8.04	15.14	8.78	8.64	13.23	19.67	16.07	20.1	12.22
Merged-chr19-11589376-3	chr19	11589254	11589454	+	891.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	15450.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	13.33	10.31	12.55	6.84	13.09	13.48	13.29	18.17	10.62	24.6	20.1	15.98
Merged-chr10-126987427-3	chr10	126987322	126987522	+	891.3833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-8108.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	9.29	6.29	13.69	22.93	13.91	5.96	12.29	11.16	12.0	6.03	20.6	19.11
Merged-chr3-27233885-2	chr3	27233771	27233971	+	891.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	50867.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	10.9	6.29	1.14	2.41	11.86	12.23	12.95	9.53	22.23	23.1	11.05	8.77
Merged-chr7-122464099-2	chr7	122464005	122464205	+	891.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	Lx8b|LINE|L1	174980.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.63	6.04	5.7	4.02	13.5	22.26	13.29	12.73	18.49	9.04	11.05	12.53
Merged-chr19-5794765-3	chr19	5794688	5794888	+	891.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002847)	TTS (NR_002847)	1193.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	22.61	37.73	42.21	23.73	20.05	51.43	13.62	7.74	22.23	35.65	13.57	11.28
Merged-chr1-150143729-3	chr1	150143636	150143836	+	891.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	21212.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	11.31	14.34	17.68	8.45	8.59	12.54	11.29	17.3	14.75	20.08	27.64	6.27
Merged-chr5-105545192-3	chr5	105545077	105545277	+	891.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	RLTR17|LTR|ERVK	25706.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	12.52	7.04	19.97	16.49	12.27	21.64	8.64	8.16	29.5	24.1	28.14	11.59
Merged-chr8-123280901-1	chr8	123280801	123281001	+	891.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016925, intron 30 of 42)	intron (NM_016925, intron 30 of 42)	-26679.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.81	3.02	5.7	2.01	4.09	1.25	1.0	1.15	15.34	15.57	15.58	17.23
Merged-chr2-120623139-1	chr2	120623039	120623239	+	891.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13544.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	11.71	6.29	9.13	5.63	15.96	7.21	5.98	10.54	16.13	3.01	6.53	6.89
Merged-chr19-6987575-4	chr19	6987424	6987624	+	891.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357001)	TTS (NM_001357001)	127.0	NM_001185164	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	10.5	6.29	7.42	16.89	8.59	9.09	5.65	8.21	5.7	12.55	11.56	5.64
Merged-chr14-103186836-3	chr14	103186730	103186930	+	891.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 49 of 84)	Lx6|LINE|L1	-87264.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	16.15	11.07	10.27	19.71	11.45	6.9	16.28	20.36	13.57	17.57	20.6	9.08
Merged-chr6-43383538-3	chr6	43383437	43383637	+	891.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-58892.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	17.36	7.04	15.97	16.89	16.36	10.03	22.26	29.16	14.36	13.05	26.13	13.47
Merged-chr13-107809301-3	chr13	107809246	107809446	+	891.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	80718.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	21.8	3.52	21.68	7.64	13.5	21.64	9.3	11.52	13.37	4.02	14.07	5.01
Merged-chr4-55813002-3	chr4	55812909	55813109	+	891.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-280534.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	15.75	13.33	10.27	31.37	6.95	7.84	10.3	27.81	12.19	8.03	17.08	10.34
Merged-chr19-45585036-2	chr19	45584934	45585134	+	891.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	24449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	8.08	15.59	16.54	7.64	7.36	7.21	3.65	10.49	10.82	5.02	21.1	4.07
Merged-chr4-102290442-2	chr4	102290345	102290545	+	891.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	35506.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	21.8	19.87	34.8	19.71	4.91	5.64	5.31	10.63	6.1	1.0	6.03	7.21
Merged-chr11-80089482-3	chr11	80089427	80089627	+	891.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001029856, exon 1 of 23)	5' UTR (NM_001029856, exon 1 of 23)	127.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	12.92	13.58	2.28	4.42	9.0	13.17	5.65	5.38	18.49	26.61	6.03	8.77
Merged-chr17-5804541-3	chr17	5804439	5804639	+	891.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5049.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	20.19	23.39	14.83	18.1	10.23	32.3	6.98	18.36	15.14	21.09	5.53	9.08
Merged-chr17-33564832-3	chr17	33564731	33564931	+	891.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	9124.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	9.69	4.53	27.95	9.25	25.77	13.48	12.95	22.26	19.28	14.06	21.1	13.16
Merged-chr8-40703115-1	chr8	40703015	40703215	+	891.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	28038.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	1.62	1.51	0.0	0.0	1.64	0.63	0.0	2.36	15.54	13.56	18.09	8.46
Merged-chr5-64209994-1	chr5	64209894	64210094	+	891.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20363.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.81	3.27	3.99	2.82	9.82	10.98	15.61	12.11	1.77	3.01	5.53	4.39
Merged-chr13-96510784-2	chr13	96510700	96510900	+	891.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	8387.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	1.62	7.04	3.42	7.24	17.59	17.87	13.29	26.8	12.59	7.03	11.56	7.83
Merged-chr11-47276885-3	chr11	47276783	47276983	+	891.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	102419.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	15.34	12.32	23.96	24.13	8.59	14.42	15.28	24.98	13.37	9.04	41.2	10.02
Merged-chr16-52932167-3	chr16	52932071	52932271	+	891.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-116427.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	8.48	15.59	13.69	17.29	10.23	6.59	19.93	25.21	18.1	17.57	27.64	11.28
Merged-chr7-80059350-3	chr7	80059244	80059444	+	891.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	15913.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	17.36	21.13	19.4	22.12	18.82	23.2	11.63	27.31	14.95	9.04	8.04	8.14
Merged-chr5-114772951-4	chr5	114772759	114772959	+	891.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027872)	TTS (NR_027872)	632.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	13.73	13.83	4.56	4.42	8.18	15.99	7.31	8.61	26.16	21.09	12.56	9.4
Merged-chr2-34778349-6	chr2	34778259	34778459	+	891.0729980000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145522)	TTS (NM_145522)	6269.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	20.59	19.87	6.85	6.03	6.14	30.1	5.31	1.51	26.36	21.59	7.03	8.77
Merged-chr13-110907740-3	chr13	110907670	110907870	+	891.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131193, exon 5 of 5)	non-coding (NR_131193, exon 5 of 5)	-3924.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	9.69	5.79	6.85	11.66	18.41	12.23	11.63	20.27	7.47	3.01	19.09	10.96
Merged-chr10-66807777-2	chr10	66807693	66807893	+	891.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112591.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	11.71	3.27	2.85	4.02	6.95	13.8	7.31	10.68	16.13	15.57	15.58	4.07
Merged-chr12-100791674-3	chr12	100791587	100791787	+	891.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	12630.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	16.56	19.62	10.27	16.89	20.05	27.59	14.62	16.71	9.83	13.05	22.11	6.58
Merged-chr17-71192181-3	chr17	71192070	71192270	+	891.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	L1MC3|LINE|L1	8192.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	14.54	17.1	11.41	5.63	15.96	24.77	9.3	12.22	24.98	27.62	28.14	7.21
Merged-chr9-66680344-1	chr9	66680244	66680444	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33342.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	7.67	1.51	7.42	6.84	2.05	7.84	3.65	14.78	7.87	2.01	4.52	3.45
Merged-chr6-113748408-3	chr6	113748295	113748495	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-7714.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	12.92	5.28	13.69	8.45	7.36	12.54	5.98	6.45	19.28	20.59	34.17	18.8
Merged-chr5-8355773-1	chr5	8355673	8355873	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	RSINE1|SINE|B4	12387.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	4.85	5.28	6.85	9.25	2.45	3.45	7.64	6.81	6.88	7.53	7.54	4.07
Merged-chr2-145884512-1	chr2	145884412	145884612	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18729.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.83	2.01	5.7	6.84	4.91	7.21	16.61	11.33	6.49	0.5	6.53	1.25
Merged-chr10-38623612-1	chr10	38623512	38623712	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	198167.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	4.04	9.56	18.25	7.24	6.14	5.33	13.29	3.67	5.51	3.01	7.54	7.83
Merged-chr1-182368526-1	chr1	182368426	182368626	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26920.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	2.83	4.28	3.42	2.41	7.36	4.7	5.31	9.53	1.38	5.02	3.52	4.07
Merged-chr11-94585991-1	chr11	94585891	94586091	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	15795.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	4.04	4.02	9.7	3.62	12.27	7.53	1.66	9.76	9.64	7.03	7.54	5.95
Merged-chr2-84387506-2	chr2	84387413	84387613	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	37753.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.85	3.02	12.55	2.41	4.5	12.54	10.3	10.77	39.14	12.55	28.64	12.22
Merged-chr17-86744868-1	chr17	86744768	86744968	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8996.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.44	5.03	1.14	6.84	2.05	5.96	8.64	9.03	0.98	1.51	0.0	1.88
Merged-chr1-151104965-1	chr1	151104865	151105065	+	891.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-33069.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	4.85	9.06	3.99	0.8	15.96	8.15	1.66	2.05	15.34	7.03	14.07	3.45
Merged-chr18-11054379-1	chr18	11054279	11054479	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010258, exon 2 of 7)	exon (NM_010258, exon 2 of 7)	-1812.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.81	2.01	2.85	6.44	2.86	1.25	1.33	2.36	1.77	3.01	3.01	5.01
Merged-chr8-117330042-1	chr8	117329942	117330142	+	891.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-19128.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.23	7.04	6.85	1.21	2.86	8.47	0.66	0.76	11.01	3.01	11.05	0.63
Merged-chr16-55967033-3	chr16	55966937	55967137	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024218, intron 2 of 5)	intron (NM_024218, intron 2 of 5)	762.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	12.92	11.07	14.83	6.03	22.09	36.06	15.94	6.5	35.8	43.18	21.1	8.77
Merged-chr12-117558135-1	chr12	117558035	117558235	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	41656.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.42	4.53	7.99	15.28	15.96	10.35	11.96	18.9	5.11	8.54	5.53	2.19
Merged-chr8-57577460-1	chr8	57577360	57577560	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	65617.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	11.31	13.58	9.7	1.61	5.73	10.66	4.65	1.26	11.01	8.03	6.53	3.13
Merged-chr8-39637612-1	chr8	39637512	39637712	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	5066.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.83	2.52	5.13	2.41	2.86	10.03	1.33	2.52	3.34	3.01	4.52	2.19
Merged-chr12-76596451-1	chr12	76596351	76596551	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-48526.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	4.04	6.29	2.28	5.63	4.09	8.47	5.98	8.83	6.1	9.04	5.53	2.51
Merged-chr3-146784417-3	chr3	146784339	146784539	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-3023.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	11.31	9.31	15.4	10.05	11.45	12.23	9.97	11.97	14.75	15.06	17.08	14.1
Merged-chr2-167692273-4	chr2	167692172	167692372	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1095.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.67	6.79	25.1	19.71	12.27	4.39	37.87	22.18	12.0	10.04	20.6	25.69
Merged-chr4-59544914-3	chr4	59544816	59545016	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	4448.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	10.09	4.53	18.83	22.93	24.14	17.56	19.6	22.93	16.92	23.1	16.58	10.34
Merged-chr9-66601204-3	chr9	66601092	66601292	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8077.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	11.31	17.86	7.99	8.85	21.27	34.49	3.99	10.09	23.21	21.09	27.13	11.9
Merged-chr2-80045136-2	chr2	80045044	80045244	+	890.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	LTR81A|LTR|Gypsy	-6242.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.21	1.26	8.56	5.23	14.73	8.15	15.61	14.97	7.87	14.56	16.58	14.1
Merged-chr13-63240013-3	chr13	63239916	63240116	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-13.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	10.9	11.07	14.26	7.24	27.82	31.67	8.64	20.1	23.8	17.57	20.1	11.9
Merged-chrX-71150666-3	chrX	71150586	71150786	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 5 of 6)	intron (NM_001081354, intron 5 of 6)	-60081.0	NM_001164190	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	11.31	14.09	10.84	3.62	10.23	16.93	16.28	21.62	12.0	14.06	14.07	8.14
Merged-chr8-4214553-3	chr8	4214456	4214656	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2756.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	17.36	17.86	9.7	11.26	21.68	11.92	22.59	19.65	16.33	14.56	22.61	12.84
Merged-chr12-79122993-3	chr12	79122896	79123096	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7792.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	14.54	11.32	6.85	8.85	14.73	15.05	6.64	15.5	19.28	11.05	20.1	14.72
Merged-chr7-66134372-3	chr7	66134276	66134476	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	24861.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	10.5	8.55	19.4	5.23	20.86	38.26	12.29	19.04	18.49	17.07	22.11	13.16
Merged-chr9-15010467-3	chr9	15010375	15010575	+	890.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	35003.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	8.48	10.82	26.81	22.52	21.68	17.87	18.93	34.21	16.33	18.08	13.57	15.98
Merged-chr2-6454933-3	chr2	6454829	6455029	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102193.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	8.08	9.31	29.09	24.53	22.5	13.48	14.62	26.02	27.34	9.04	43.72	23.49
Merged-chr17-27565333-3	chr17	27565253	27565453	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002895, intron 1 of 4)	intron (NM_001002895, intron 1 of 4)	374.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	11.31	8.05	12.55	9.65	15.14	10.35	8.3	12.08	18.1	12.05	21.1	8.46
Merged-chr16-78182337-3	chr16	78182227	78182427	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73127.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	10.09	8.05	3.99	8.45	27.41	15.05	15.94	30.06	33.63	27.62	49.75	18.8
Merged-chr17-34143650-3	chr17	34143542	34143742	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1774.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	11.31	11.82	10.84	4.42	12.68	24.46	8.3	12.14	23.01	21.59	17.08	10.65
Merged-chr4-149763534-3	chr4	149763431	149763631	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027460, intron 1 of 6)	URR1B|DNA|hAT-Charlie	10736.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.27	10.06	16.54	9.25	15.55	15.37	20.59	22.54	24.98	28.12	35.17	20.36
Merged-chr3-96256134-3	chr3	96256044	96256244	+	890.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7173.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	12.92	13.33	14.83	11.66	10.64	15.05	3.99	15.39	17.51	15.06	20.1	21.93
Merged-chr14-105297400-2	chr14	105297279	105297479	+	890.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	38706.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	8.88	19.87	33.09	17.29	7.77	14.11	7.64	10.43	2.36	1.51	1.51	2.19
Merged-chrX-53752597-3	chrX	53752507	53752707	+	890.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001200013, intron 1 of 8)	intron (NM_001200013, intron 1 of 8)	5224.0	NM_001200013	75514.0	Mm.116929	NM_001200013	ENSMUSG00000054727	1700013H16Rik	Slx2|Xlr6	RIKEN cDNA 1700013H16 gene	protein-coding	13.33	8.3	5.7	18.9	20.46	18.81	5.98	11.52	16.33	10.54	23.62	18.8
Merged-chr9-120776749-3	chr9	120776638	120776838	+	890.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138512.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	73.89	97.84	71.31	56.71	119.87	118.22	69.76	53.55	17.9	7.53	11.05	8.46
Merged-chrX-36112348-6	chrX	36112216	36112416	+	890.819458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	CpG	208.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	8.48	12.58	8.56	6.44	14.32	15.99	7.64	5.36	11.01	18.58	14.07	6.27
Merged-chr3-136703077-3	chr3	136702963	136703163	+	890.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	32997.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	16.56	9.56	13.12	7.64	11.86	16.62	10.63	18.95	30.29	13.56	33.16	11.59
Merged-chr10-122735494-3	chr10	122735330	122735530	+	890.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	56115.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	9.29	6.04	6.85	4.42	6.14	3.76	6.31	9.62	13.37	9.04	10.55	10.65
Merged-chr17-34248920-2	chr17	34248821	34249021	+	890.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10016.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	10.5	9.81	9.7	3.62	3.68	2.51	1.99	4.07	27.34	13.56	28.14	9.71
Merged-chr6-89045799-2	chr6	89045675	89045875	+	890.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50335.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	17.36	20.12	14.26	23.33	9.82	15.68	13.95	37.21	2.95	10.54	8.04	5.95
Merged-chr1-54438976-3	chr1	54438879	54439079	+	890.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	47.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	13.73	12.07	8.56	4.42	11.86	17.56	12.95	12.93	16.13	11.55	21.61	3.76
Merged-chr19-29828744-3	chr19	29828655	29828855	+	890.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-15781.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	13.73	6.54	22.82	6.44	9.0	7.53	4.32	11.97	15.54	15.06	13.06	11.9
Merged-chr6-115470026-3	chr6	115469916	115470116	+	890.677734	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47950.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	14.13	18.86	19.4	18.9	16.77	7.21	13.95	23.8	20.06	11.55	13.06	18.17
Merged-chr8-35678010-1	chr8	35677910	35678110	+	890.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-88990.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.63	1.76	6.28	4.02	3.27	9.41	12.95	5.47	2.75	4.52	3.52	0.94
Merged-chr10-61375305-3	chr10	61375197	61375397	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	8226.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	5.25	9.06	10.84	7.24	12.27	13.17	2.66	9.95	15.34	8.03	23.11	5.33
Merged-chr5-98320004-1	chr5	98319904	98320104	+	890.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9300.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	2.42	1.76	2.28	4.42	10.23	8.47	20.59	42.03	3.34	0.0	7.03	6.27
Merged-chr10-45276673-3	chr10	45276574	45276774	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12631.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	5.25	8.3	10.27	13.67	29.05	60.83	33.22	41.3	34.42	31.63	73.36	17.86
Merged-chr12-98832603-1	chr12	98832503	98832703	+	890.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	MTD|LTR|ERVL-MaLR	61581.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	4.44	8.05	6.28	0.8	0.41	9.72	3.99	3.31	20.65	11.55	19.6	6.58
Merged-chr3-103790962-2	chr3	103790834	103791034	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301304, intron 1 of 15)	CpG	341.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	8.48	12.83	10.27	12.87	15.55	18.5	12.62	11.1	16.33	21.59	20.1	9.4
Merged-chr17-72961055-3	chr17	72960961	72961161	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	42756.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.46	12.07	9.7	16.09	12.68	23.83	10.63	24.39	15.54	13.56	17.59	9.71
Merged-chr9-90198116-3	chr9	90198025	90198225	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35147.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.23	10.06	6.28	9.65	10.23	20.7	12.62	10.49	19.47	14.06	29.14	11.28
Merged-chr17-28226217-3	chr17	28226118	28226318	+	890.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027185, exon 9 of 11)	exon (NM_027185, exon 9 of 11)	-6536.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	20.19	11.32	8.56	13.67	18.0	11.6	7.64	10.46	17.9	10.04	21.1	16.6
Merged-chr2-58566797-3	chr2	58566690	58566890	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	38.0	NM_001110205	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	7.67	13.58	13.12	2.41	14.73	15.68	17.61	17.27	11.6	9.54	20.1	10.96
Merged-chr11-32224971-3	chr11	32224878	32225078	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1527.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	11.31	10.06	14.26	7.24	10.64	16.62	12.62	20.94	15.93	10.54	23.11	17.23
Merged-chr5-90900928-3	chr5	90900837	90901037	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2962.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	11.31	9.31	10.27	13.27	18.41	19.76	16.94	23.22	12.19	16.57	27.13	9.08
Merged-chr13-35741961-3	chr13	35741854	35742054	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	CpG	552.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	13.73	14.09	3.99	13.67	11.86	7.21	16.61	6.98	11.8	20.59	10.05	8.46
Merged-chr12-99526955-3	chr12	99526841	99527041	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36900.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	10.9	14.34	6.28	6.03	17.18	13.8	5.98	17.92	20.85	10.04	17.59	15.04
Merged-chr10-31609410-2	chr10	31609350	31609550	+	890.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	275.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	12.52	11.07	8.56	9.65	15.96	12.23	9.97	20.72	8.85	7.03	3.01	5.01
Merged-chr1-43139787-3	chr1	43139678	43139878	+	890.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010212, intron 3 of 5)	intron (NM_010212, intron 3 of 5)	24183.0	NM_010212	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	2.42	10.31	10.27	8.85	18.41	23.2	10.96	22.01	23.8	16.57	40.2	24.12
Merged-chr1-161728782-3	chr1	161728677	161728877	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59718.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	52.49	47.04	51.91	36.6	9.41	6.59	8.97	6.95	28.13	9.54	28.64	10.34
Merged-chr6-86570972-3	chr6	86570881	86571081	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43580.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	12.52	8.55	14.83	6.44	31.91	48.29	26.24	17.52	15.14	28.12	21.1	10.96
Merged-chr1-9826050-3	chr1	9825935	9826135	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	-22246.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	13.73	7.29	10.27	15.69	13.09	10.03	1.33	14.94	23.6	15.57	19.6	15.66
Merged-chr13-22044307-3	chr13	22044161	22044361	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178198)	TTS (NM_178198)	1031.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	11.71	11.32	7.99	15.28	8.18	15.68	6.31	10.07	11.8	11.05	18.09	12.22
Merged-chr10-20005685-3	chr10	20005601	20005801	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 2 of 29)	L1ME3Cz|LINE|L1	71175.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	11.31	18.61	21.11	16.89	22.91	6.9	9.3	16.85	13.96	24.1	15.58	14.72
Merged-chr17-69075691-3	chr17	69075587	69075787	+	890.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355732)	promoter-TSS (NM_001355732)	10.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	15.34	8.05	14.26	16.49	9.41	9.41	16.28	16.49	10.82	12.55	21.1	10.34
Merged-chr8-109869148-3	chr8	109869060	109869260	+	890.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122594, intron 1 of 18)	CpG	557.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	8.48	14.09	15.97	11.26	13.09	17.25	13.62	9.53	15.14	12.55	10.05	14.1
Merged-chr12-116597169-2	chr12	116597079	116597279	+	890.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	MTE2a|LTR|ERVL-MaLR	111459.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	2.42	4.28	6.28	2.01	8.59	5.64	6.98	6.08	45.04	55.23	54.77	34.77
Merged-chr17-25868722-3	chr17	25868618	25868818	+	890.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026633)	promoter-TSS (NM_026633)	20.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	9.29	11.57	14.26	16.89	17.59	8.47	20.93	9.08	12.39	9.54	23.62	14.72
Merged-chr6-147799196-2	chr6	147799096	147799296	+	890.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108955.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	12.92	6.29	6.85	11.66	37.23	37.0	23.25	45.95	3.15	12.55	7.03	1.25
Merged-chr6-146126987-2	chr6	146126848	146127048	+	890.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	192826.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	6.06	1.26	5.13	7.24	9.41	9.72	4.98	15.34	8.06	1.51	8.04	3.76
Merged-chr17-30591003-1	chr17	30590903	30591103	+	890.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-14716.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	17.77	9.81	11.98	13.67	1.64	1.25	1.66	1.46	3.15	5.52	2.01	1.57
Merged-chr6-91489056-2	chr6	91488959	91489159	+	890.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028766)	TTS (NM_028766)	15308.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	12.11	6.29	4.56	6.44	37.64	17.56	11.29	18.67	12.0	19.58	18.59	7.52
Merged-chr2-157064233-3	chr2	157064132	157064332	+	890.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15033.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	12.92	13.08	11.41	13.27	8.59	13.17	15.94	10.04	14.36	11.55	15.07	5.01
Merged-chr4-9612038-3	chr4	9611940	9612140	+	890.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 3 of 22)	intron (NM_001290367, intron 3 of 22)	31677.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	10.9	8.55	22.82	13.27	13.91	13.48	11.29	28.4	22.23	11.05	40.2	10.34
Merged-chr17-69204009-2	chr17	69203918	69204118	+	890.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	44662.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	2.02	4.53	8.56	6.84	14.73	7.53	11.96	16.54	13.77	5.02	13.06	7.21
Merged-chr2-59187552-3	chr2	59187443	59187643	+	890.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	MIRb|SINE|MIR	26693.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	7.27	8.3	12.55	12.87	31.5	22.89	16.61	20.05	21.64	24.1	11.05	13.16
Merged-chr17-3084797-3	chr17	3084689	3084889	+	890.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	-606.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	16.56	12.58	11.41	22.52	26.59	14.42	12.29	14.94	21.64	28.62	16.58	16.29
Merged-chr3-98060032-3	chr3	98059937	98060137	+	890.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	46499.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	11.31	14.34	16.54	16.89	13.91	10.35	18.6	27.64	16.92	7.03	17.08	8.77
Merged-chr15-97182724-3	chr15	97182624	97182824	+	890.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15480.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	12.11	12.07	10.27	8.45	24.14	30.1	21.26	23.38	27.93	14.56	20.1	12.22
Merged-chr10-14102115-3	chr10	14102026	14102226	+	890.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	135747.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	11.31	4.53	22.25	14.08	6.55	17.25	27.24	28.35	21.24	18.08	25.63	24.75
Merged-chr5-86961999-2	chr5	86961907	86962107	+	890.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35504.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	3.63	2.01	0.57	4.83	12.27	17.56	13.95	14.94	12.98	15.57	10.55	5.64
Merged-chr2-167844197-2	chr2	167844102	167844302	+	890.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88125.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.25	2.77	8.56	8.04	16.77	3.76	5.98	10.04	16.13	4.02	18.59	7.21
Merged-chr8-57574614-3	chr8	57574528	57574728	+	890.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62785.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	10.9	12.58	16.54	17.29	10.64	16.62	10.96	11.94	20.65	18.58	36.68	8.46
Merged-chr6-83131819-3	chr6	83131712	83131912	+	890.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3996.0	NM_001136227	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	14.54	12.58	26.81	26.95	24.55	16.93	12.29	21.03	13.18	9.04	17.59	8.46
Merged-chr12-69145508-2	chr12	69145434	69145634	+	890.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	13652.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	8.08	8.05	16.54	9.65	6.55	17.56	17.61	13.82	3.74	8.03	11.56	4.07
Merged-chr13-112871751-2	chr13	112871636	112871836	+	890.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028151, intron 25 of 26)	intron (NM_028151, intron 25 of 26)	55644.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	4.04	3.52	2.28	2.41	17.59	7.84	12.95	22.35	23.8	26.61	30.65	9.08
Merged-chr2-160569748-3	chr2	160569619	160569819	+	890.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76178.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	6.46	7.55	13.12	9.25	4.09	7.21	7.64	4.99	12.39	10.04	14.07	12.22
Merged-chr14-73146915-2	chr14	73146810	73147010	+	890.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033185, intron 1 of 15)	RMER6A|LTR|ERVK	4125.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.85	5.79	1.14	8.04	10.23	13.8	7.97	9.73	18.49	19.58	17.08	10.34
Merged-chr11-50245427-2	chr11	50245332	50245532	+	890.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6900.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	8.88	2.77	9.13	5.63	17.59	28.22	11.96	25.82	10.82	11.55	20.6	9.71
Merged-chr5-75154703-1	chr5	75154603	75154803	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	-1463.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	7.27	6.79	6.28	2.01	4.09	13.48	8.3	7.12	3.54	10.04	6.53	0.94
Merged-chr11-51224179-1	chr11	51224079	51224279	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3761.0	NR_110444	71297.0	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	4.44	1.76	7.99	4.42	10.23	6.27	12.95	12.9	7.67	5.52	11.56	8.14
Merged-chr12-16568907-1	chr12	16568807	16569007	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130412, intron 6 of 20)	intron (NM_001130412, intron 6 of 20)	20863.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.23	1.51	0.0	1.61	2.45	1.25	4.65	3.53	1.38	1.51	4.02	1.57
Merged-chr11-21403060-3	chr11	21402961	21403161	+	890.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31794.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	10.9	7.8	13.69	11.66	18.41	19.13	20.26	25.09	23.21	32.64	29.65	13.78
Merged-chr14-17402949-1	chr14	17402849	17403049	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258011.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	7.27	6.54	9.7	4.83	12.68	9.41	4.65	10.82	5.9	14.06	7.03	2.19
Merged-chr18-68180936-1	chr18	68180836	68181036	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-47010.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.81	3.52	3.99	10.05	11.86	2.82	7.64	8.02	0.79	1.0	3.52	0.94
Merged-chr7-120684782-1	chr7	120684682	120684882	+	890.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	7162.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	6.46	16.85	17.11	16.49	4.5	3.14	0.33	4.99	9.24	12.05	3.01	3.76
Merged-chr3-22058416-1	chr3	22058316	22058516	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18236.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.86	5.53	4.56	9.65	11.86	5.33	7.64	13.15	5.51	3.01	5.53	5.33
Merged-chr19-11518544-3	chr19	11518455	11518655	+	890.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-4.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	20.59	6.29	17.11	16.09	13.09	14.11	8.64	10.18	13.37	12.55	11.56	7.83
Merged-chr14-27186054-3	chr14	27185976	27186176	+	890.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42083.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	21.4	10.06	9.13	6.84	16.77	15.99	20.93	24.95	11.01	15.06	15.58	7.52
Merged-chr3-20198077-3	chr3	20197989	20198189	+	890.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24270.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	10.5	14.84	17.68	12.47	20.05	19.76	22.26	25.12	19.08	12.05	23.62	8.77
Merged-chr8-84913590-4	chr8	84913454	84913654	+	890.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_103491, intron 1 of 2)	intron (NR_103491, intron 1 of 2)	219.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	20.59	19.37	35.37	21.32	24.14	31.04	24.58	35.07	17.11	21.09	27.64	18.48
Merged-chr1-58728542-4	chr1	58728396	58728596	+	890.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2056.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	12.52	16.85	7.99	6.44	13.91	23.2	10.96	6.98	19.67	26.11	14.57	14.41
Merged-chr1-91057655-4	chr1	91057500	91057700	+	890.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	4156.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	14.94	19.62	17.11	19.31	9.41	12.23	18.93	7.6	18.49	31.63	22.61	12.53
Merged-chr5-101909739-2	chr5	101909642	101909842	+	890.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 27 of 66)	intron (NM_172882, intron 27 of 66)	144612.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.44	3.77	8.56	15.69	14.32	15.99	15.94	11.21	7.08	7.03	35.68	20.05
Merged-chr1-161976594-3	chr1	161976500	161976700	+	890.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3036.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	10.5	9.56	9.7	16.09	13.5	16.31	8.64	14.8	32.45	13.56	28.64	17.54
Merged-chr10-111994336-3	chr10	111994255	111994455	+	890.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	2909.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.06	7.55	9.7	16.49	19.23	17.25	19.93	34.29	19.08	19.58	42.21	21.93
Merged-chr5-97055823-3	chr5	97055699	97055899	+	890.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 9 of 15)	intron (NM_080708, intron 9 of 15)	55797.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	18.57	10.82	15.97	16.49	12.68	18.19	6.98	16.09	26.36	27.62	6.53	7.52
Merged-chr6-21955002-3	chr6	21954927	21955127	+	890.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	MTD|LTR|ERVL-MaLR	5412.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	8.08	5.03	16.54	14.08	21.68	13.48	17.94	24.84	21.64	11.05	18.59	18.8
Merged-chrX-71053019-3	chrX	71052938	71053138	+	890.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	2782.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	14.94	12.32	14.83	13.67	10.64	13.17	5.98	13.18	15.93	13.05	26.13	11.28
Merged-chr12-4366141-1	chr12	4366041	4366241	+	890.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010881, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	111041.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	6.46	6.54	4.56	5.23	15.14	11.29	10.63	15.31	9.64	5.52	10.55	10.02
Merged-chr6-129468978-1	chr6	129468878	129469078	+	890.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_132130, exon 3 of 6)	non-coding (NR_132130, exon 3 of 6)	3801.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	1.62	2.01	1.14	0.0	0.41	2.2	1.99	3.53	14.75	11.05	17.08	11.59
Merged-chr12-118930744-3	chr12	118930648	118930848	+	890.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029961, intron 11 of 27)	intron (NM_029961, intron 11 of 27)	35673.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	11.71	9.81	18.25	6.44	7.36	16.93	8.64	18.76	25.77	15.06	25.63	11.59
Merged-chr9-20868737-3	chr9	20868669	20868869	+	890.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175687, exon 1 of 8)	5' UTR (NM_175687, exon 1 of 8)	127.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	23.02	11.07	17.68	12.07	22.5	10.03	10.63	20.72	21.24	17.07	26.13	17.54
Merged-chr15-59426955-1	chr15	59426855	59427055	+	890.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	52757.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.04	2.77	7.99	8.04	15.14	18.81	7.64	8.41	7.28	9.04	10.05	3.76
Merged-chr2-153557569-3	chr2	153557468	153557668	+	890.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27597.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.25	11.82	11.41	5.63	16.36	20.07	9.97	7.51	25.96	17.07	37.69	7.21
Merged-chr3-97681221-3	chr3	97681137	97681337	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9325.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	8.48	10.06	18.25	3.22	7.77	19.76	9.63	21.84	19.87	29.62	26.63	24.12
Merged-chr19-8534803-3	chr19	8534713	8534913	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56441.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	13.73	13.08	17.11	8.04	9.82	6.27	3.32	6.34	16.13	14.56	16.08	5.33
Merged-chrX-9473940-3	chrX	9473845	9474045	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4621.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	15.75	12.58	15.97	8.04	16.36	23.52	9.63	18.2	14.75	2.01	16.08	15.35
Merged-chr3-90111849-3	chr3	90111752	90111952	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	7720.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	6.06	8.55	13.69	13.27	19.23	17.25	11.63	24.31	7.47	9.54	36.18	12.22
Merged-chr2-160084947-3	chr2	160084857	160085057	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68304.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	12.92	21.38	21.11	10.86	31.5	23.52	22.26	28.88	22.62	12.05	16.58	8.14
Merged-chr1-179803126-2	chr1	179803025	179803225	+	890.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026375, intron 1 of 35)	CpG	890.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	13.73	17.1	10.84	10.86	20.05	21.64	13.62	14.92	20.85	16.07	11.56	10.96
Merged-chr8-121591542-3	chr8	121591479	121591679	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026160, intron 1 of 3)	intron (NM_026160, intron 1 of 3)	1111.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	12.92	13.08	13.12	15.69	12.68	13.48	8.3	13.85	16.92	6.03	12.06	12.84
Merged-chr4-134763995-3	chr4	134763885	134764085	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	4019.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	13.33	7.29	7.99	9.25	20.46	13.48	24.58	19.68	20.85	16.57	23.11	14.72
Merged-chr6-31115715-3	chr6	31115624	31115824	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-52631.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	10.09	12.32	7.42	8.85	14.32	20.38	13.62	20.22	21.83	22.59	17.08	20.05
Merged-chr2-129304659-3	chr2	129304563	129304763	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 5 of 6)	intron (NM_010554, intron 5 of 6)	5309.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	11.71	9.81	12.55	14.48	8.59	7.21	5.31	6.79	15.34	15.57	19.6	13.47
Merged-chr4-108790683-3	chr4	108790584	108790784	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9596.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	12.11	11.07	15.97	14.48	11.45	18.81	11.29	18.98	19.08	7.53	13.57	9.71
Merged-chr16-49888416-3	chr16	49888298	49888498	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 4 of 9)	Tigger6a|DNA|TcMar-Tigger	32744.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.85	8.05	14.26	22.52	25.77	16.62	19.93	31.35	15.54	9.54	14.57	14.72
Merged-chr16-95659700-2	chr16	95659613	95659813	+	890.0166630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42694.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.25	6.29	5.13	9.25	20.05	26.65	11.29	23.27	14.75	11.05	25.12	13.78
Merged-chr11-48874690-3	chr11	48874604	48874804	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3284.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	14.94	11.07	3.99	15.28	13.5	7.84	10.3	10.07	13.77	10.54	10.05	11.28
Merged-chr12-40504205-3	chr12	40504099	40504299	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	L1M2|LINE|L1	58146.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.65	13.58	29.66	8.85	15.96	6.27	5.31	11.64	21.24	4.52	19.09	9.71
Merged-chr11-22782874-1	chr11	22782774	22782974	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76861.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.63	4.28	4.56	6.03	5.32	5.33	6.31	7.91	1.97	4.02	9.55	1.57
Merged-chr7-135652431-2	chr7	135652366	135652566	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-152.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	8.08	3.27	11.98	7.64	18.41	12.54	8.3	11.75	11.6	12.05	9.55	10.34
Merged-chr7-96418530-1	chr7	96418430	96418630	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-76566.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.23	4.28	14.26	1.21	3.27	2.51	6.98	9.2	1.57	0.5	3.52	2.19
Merged-chr1-140261379-3	chr1	140261276	140261476	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	15119.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	11.71	8.55	11.41	6.03	22.09	29.16	21.26	17.38	8.06	21.09	20.6	4.7
Merged-chr12-33017031-2	chr12	33016932	33017132	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	62846.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	6.86	2.52	6.28	8.04	9.82	4.39	7.31	9.73	13.37	7.03	8.04	10.34
Merged-chr18-61482447-1	chr18	61482347	61482547	+	890.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	2160.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	1.01	5.7	1.61	6.95	3.45	3.99	1.23	17.7	14.56	11.56	14.41
Merged-chr7-110999605-2	chr7	110999500	110999700	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17139.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	9.29	6.29	7.99	4.42	12.68	17.87	11.29	8.58	9.44	13.56	15.58	6.27
Merged-chr15-103255367-3	chr15	103255257	103255457	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008685)	promoter-TSS (NM_008685)	82.0	NM_008685	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	13.33	22.89	13.69	9.25	16.36	14.42	8.64	11.41	16.52	12.55	19.09	6.58
Merged-chr5-74953997-1	chr5	74953897	74954097	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	4803.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	1.62	3.27	10.27	1.61	5.73	2.82	13.95	15.11	5.9	10.04	8.54	9.08
Merged-chr14-105288098-1	chr14	105287998	105288198	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	29425.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	6.06	1.26	1.14	0.8	2.86	3.14	4.65	2.78	2.56	6.53	4.52	2.51
Merged-chr13-42015690-3	chr13	42015597	42015797	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36324.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	29.07	8.55	19.97	14.88	11.86	19.13	6.64	9.9	13.77	18.58	21.61	5.64
Merged-chr10-26785424-1	chr10	26785324	26785524	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	12912.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.23	1.76	3.42	1.61	1.64	0.94	4.98	7.37	1.57	4.52	4.02	2.82
Merged-chr4-40781380-1	chr4	40781280	40781480	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23495.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.63	3.02	2.85	1.61	12.27	7.84	2.33	13.43	9.64	5.52	6.03	4.7
Merged-chr15-31418268-3	chr15	31418221	31418421	+	889.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35368.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	15.75	9.31	6.85	8.45	17.18	10.03	15.94	21.93	10.62	18.58	24.62	15.66
Merged-chr9-99001539-3	chr9	99001440	99001640	+	889.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011810, intron 4 of 4)	intron (NM_011810, intron 4 of 4)	15167.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	18.17	14.84	7.42	19.71	21.27	34.81	9.3	14.78	21.24	14.56	18.09	9.4
Merged-chr16-33180118-3	chr16	33179999	33180199	+	889.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4972.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	11.71	9.56	24.53	22.93	20.46	14.11	17.61	27.11	16.33	13.56	20.1	20.99
Merged-chr8-46769506-3	chr8	46769408	46769608	+	889.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	29763.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	13.33	13.83	23.96	12.87	24.14	21.32	14.95	21.76	16.13	12.55	20.1	9.71
Merged-chr3-61442376-3	chr3	61442250	61442450	+	889.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77843.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	11.31	13.08	8.56	13.67	11.05	15.99	14.28	14.16	12.39	9.04	12.06	7.83
Merged-chr6-59180572-2	chr6	59180472	59180672	+	889.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28298.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	6.46	3.77	7.99	5.63	11.86	14.42	8.64	13.35	13.57	7.53	23.11	6.89
Merged-chr17-72944118-3	chr17	72944003	72944203	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	25798.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.23	5.53	15.4	12.07	11.45	6.9	18.27	18.73	17.7	3.51	9.04	9.71
Merged-chr11-100323804-3	chr11	100323684	100323884	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3835.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	10.9	10.31	2.85	16.89	22.5	14.42	4.65	9.22	13.57	11.55	13.06	9.08
Merged-chr11-110562522-3	chr11	110562425	110562625	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83185.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	21.4	12.83	18.83	19.31	13.91	8.47	8.64	13.29	14.36	13.05	10.05	3.13
Merged-chr4-134799491-3	chr4	134799400	134799600	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31496.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	12.52	9.06	6.28	4.83	14.73	17.87	7.64	9.22	12.0	11.55	20.1	7.83
Merged-chr17-12372232-2	chr17	12372143	12372343	+	889.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6366.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	6.46	4.28	9.13	2.41	5.73	14.42	12.62	8.16	15.93	16.07	22.11	7.83
Merged-chr17-73939163-2	chr17	73939057	73939257	+	889.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011723, intron 4 of 35)	MTE2b|LTR|ERVL-MaLR	11039.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.85	5.03	21.68	13.27	6.14	12.86	7.31	11.27	5.31	16.07	3.52	3.76
Merged-chr11-121735203-3	chr11	121735101	121735301	+	889.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32774.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.85	8.3	13.12	11.66	21.27	22.58	11.96	14.64	24.19	18.58	26.63	15.35
Merged-chr2-127832348-3	chr2	127832240	127832440	+	889.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-481.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	11.71	17.36	3.99	12.47	14.32	20.07	3.99	11.86	25.57	17.57	16.08	8.46
Merged-chr17-42436164-3	chr17	42436069	42436269	+	889.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	119569.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	16.15	6.54	13.69	12.87	21.27	27.28	21.59	45.81	28.91	19.58	53.77	17.54
Merged-chr19-10946853-3	chr19	10946710	10946910	+	889.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2456.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	12.52	12.07	7.99	6.03	11.86	12.54	8.97	7.79	11.21	11.55	11.05	10.65
Merged-chr15-84341220-2	chr15	84341116	84341316	+	889.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162500, intron 12 of 12)	intron (NM_001162500, intron 12 of 12)	15097.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	6.46	11.57	5.13	2.82	14.32	10.35	4.98	7.85	16.33	16.57	8.04	5.95
Merged-chr4-141823152-3	chr4	141823030	141823230	+	889.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007919, intron 2 of 7)	MTD|LTR|ERVL-MaLR	2875.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	16.56	19.37	19.97	25.74	7.36	12.54	7.31	5.38	29.7	27.62	65.83	23.49
Merged-chr15-76309702-3	chr15	76309609	76309809	+	889.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2464.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	18.17	11.57	17.11	13.27	14.32	12.86	7.31	10.93	15.74	18.08	16.58	9.4
Merged-chr12-76957405-3	chr12	76957300	76957500	+	889.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4848.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	14.13	14.34	12.55	7.24	23.73	15.05	19.27	21.25	22.23	11.05	27.64	14.1
Merged-chr4-134765230-3	chr4	134765133	134765333	+	889.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	B1_Mus2|SINE|Alu	2771.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	16.56	11.32	6.85	7.24	14.73	23.2	8.3	13.09	24.98	18.58	29.65	12.53
Merged-chr2-51094886-3	chr2	51094783	51094983	+	889.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	54228.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	22.21	24.15	14.83	31.37	9.41	7.21	9.63	20.86	20.65	27.11	34.67	10.02
Merged-chr3-89905616-3	chr3	89905502	89905702	+	889.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7594.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	9.69	9.56	5.7	12.87	8.18	15.05	8.64	14.89	14.55	9.04	7.54	9.71
Merged-chr4-151860990-5	chr4	151860911	151861111	+	889.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	757.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	10.09	9.81	7.99	6.03	12.68	9.72	5.31	9.95	9.44	9.04	12.56	13.47
Merged-chr15-64278291-3	chr15	64278191	64278391	+	889.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	34382.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	25.84	24.15	16.54	16.89	7.77	13.8	8.64	15.14	12.78	8.03	14.57	12.53
Merged-chr1-171466767-3	chr1	171466642	171466842	+	889.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	29181.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	10.9	8.05	29.66	23.73	19.23	13.8	5.98	19.09	25.77	24.6	20.1	11.59
Merged-chr4-121018434-3	chr4	121018340	121018540	+	889.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1193.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	15.75	11.32	14.83	16.49	20.86	31.36	22.92	28.18	16.13	24.6	13.06	7.21
Merged-chr15-38427633-3	chr15	38427540	38427740	+	889.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	62907.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	10.09	12.83	10.27	16.89	13.5	24.46	20.26	23.97	15.34	18.08	15.07	13.47
Merged-chr15-58870086-3	chr15	58869997	58870197	+	889.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2552.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	8.48	15.09	5.7	9.25	11.05	11.92	14.62	8.83	17.31	17.57	16.08	9.08
Merged-chr4-134092633-3	chr4	134092530	134092730	+	889.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001162970)	TTS (NM_001162970)	2443.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	10.9	19.37	5.13	11.26	16.77	11.29	1.99	10.79	16.92	17.07	20.1	9.4
Merged-chr16-18733755-2	chr16	18733656	18733856	+	889.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-43091.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	5.65	6.79	20.54	5.23	12.27	28.54	9.3	14.5	29.31	15.06	29.14	11.9
Merged-chr17-34934049-2	chr17	34933971	34934171	+	889.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010893, exon 4 of 6)	exon (NM_010893, exon 4 of 6)	2818.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	6.06	5.03	0.57	6.03	9.41	9.09	8.97	6.81	11.01	4.02	14.57	0.94
Merged-chr11-79251077-3	chr11	79250958	79251158	+	889.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019653, exon 2 of 9)	exon (NM_019653, exon 2 of 9)	3637.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	11.71	15.09	6.28	5.23	6.55	14.42	9.63	13.21	10.62	13.56	6.53	7.83
Merged-chr10-98831678-3	chr10	98831560	98831760	+	889.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82982.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	16.96	10.82	13.69	22.93	7.77	13.8	12.29	23.24	24.78	24.1	27.64	20.05
Merged-chr5-140350106-3	chr5	140350017	140350217	+	889.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	18161.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	18.98	7.8	19.4	11.66	19.64	15.37	14.62	32.02	10.23	10.54	13.57	6.27
Merged-chr4-26441708-3	chr4	26441593	26441793	+	889.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95041.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	8.88	11.07	9.13	13.67	35.18	39.82	22.92	52.99	37.57	44.19	41.71	21.3
Merged-chr2-84455376-3	chr2	84455294	84455494	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	18780.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	13.33	7.55	16.54	8.85	15.96	10.35	2.99	16.96	28.13	7.03	11.05	11.28
Merged-chr17-64609130-3	chr17	64609041	64609241	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	7492.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.04	11.07	36.51	9.25	18.82	26.03	18.6	25.51	14.36	19.58	36.68	12.22
Merged-chr19-5953527-3	chr19	5953423	5953623	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 6 of 17)	intron (NM_001164057, intron 6 of 17)	10683.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	10.09	11.82	14.83	1.61	13.91	48.6	15.28	8.92	27.54	34.14	33.67	14.72
Merged-chr3-144897410-3	chr3	144897319	144897519	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1408.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	4.04	6.54	13.12	33.38	49.91	27.59	104.97	81.03	18.1	36.65	74.37	30.07
Merged-chr10-75513380-3	chr10	75513285	75513485	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	3996.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	15.34	22.64	3.42	0.8	18.0	42.02	14.95	9.5	32.85	35.65	19.6	6.58
Merged-chr2-170133484-4	chr2	170133396	170133596	+	889.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159683, intron 1 of 6)	CpG	-2276.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	8.88	20.63	9.7	8.04	4.91	21.64	8.64	12.25	23.01	21.09	12.06	12.84
Merged-chr16-17939032-3	chr16	17938926	17939126	+	889.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10807.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	11.71	9.81	16.54	10.05	13.5	18.5	5.98	18.73	17.9	8.54	25.12	12.22
Merged-chr13-98810380-3	chr13	98810285	98810485	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	5064.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.86	9.31	19.4	12.47	13.5	18.19	8.3	19.51	17.31	20.59	15.07	16.29
Merged-chr2-45031360-1	chr2	45031260	45031460	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-8183.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	1.62	3.02	5.13	1.61	7.77	9.41	1.66	9.95	10.23	4.52	6.53	6.27
Merged-chr5-86100894-2	chr5	86100803	86101003	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 7 of 7)	intron (NM_001310639, intron 7 of 7)	29157.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.04	4.02	4.56	8.85	9.0	10.03	15.61	15.17	6.29	14.56	12.56	5.33
Merged-chr13-45105354-3	chr13	45105298	45105498	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103302.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.46	11.57	18.83	4.42	12.27	15.99	8.64	8.92	17.31	8.03	25.63	11.28
Merged-chr1-84428776-1	chr1	84428676	84428876	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-144131.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	6.86	2.01	0.57	9.65	7.36	4.08	6.98	8.94	8.85	3.51	6.53	8.14
Merged-chr1-131761617-2	chr1	131761524	131761724	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	17602.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	5.65	5.53	14.83	6.84	17.18	35.43	32.55	16.18	6.29	9.04	13.57	10.65
Merged-chr13-107025812-2	chr13	107025706	107025906	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015471, intron 1 of 3)	RMER6A|LTR|ERVK	3236.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	6.46	6.04	3.42	2.41	15.55	13.17	9.97	9.79	11.01	11.05	18.09	3.45
Merged-chr1-173737873-3	chr1	173737756	173737956	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	3953.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	9.69	8.8	2.28	5.23	22.09	19.76	6.64	11.97	20.65	25.11	31.15	12.53
Merged-chr7-99546375-3	chr7	99546312	99546512	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-5857.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	10.09	11.07	2.85	25.74	3.27	12.86	6.31	10.18	5.51	19.58	15.07	8.14
Merged-chr8-24419940-2	chr8	24419840	24420040	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19006.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	11.71	8.3	1.14	2.41	17.18	18.81	11.96	16.88	17.7	26.61	15.07	18.48
Merged-chr12-30265362-1	chr12	30265262	30265462	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324520, intron 8 of 16)	ORR1E|LTR|ERVL-MaLR	108013.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	8.88	0.75	10.27	2.01	9.82	4.08	5.31	7.51	1.18	2.01	0.0	0.63
Merged-chr3-35732504-3	chr3	35732390	35732590	+	889.494446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-21573.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	6.06	11.57	13.69	10.05	7.36	7.84	8.3	8.33	14.16	22.09	9.55	9.71
Merged-chr14-55696794-3	chr14	55696706	55696906	+	889.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-14989.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	9.29	7.8	21.11	19.71	9.0	16.93	15.94	21.93	21.24	14.56	22.61	15.98
Merged-chr12-77092632-3	chr12	77092541	77092741	+	889.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130393.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	12.92	13.58	21.68	18.9	18.82	18.19	9.63	22.74	8.65	8.03	16.08	7.83
Merged-chr8-77443315-3	chr8	77443237	77443437	+	889.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-73719.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	9.29	8.3	18.83	6.84	53.59	40.14	44.84	42.03	81.82	62.76	67.33	41.98
Merged-chr15-60854380-3	chr15	60854286	60854486	+	889.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29306.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	17.77	11.07	15.97	18.1	15.96	13.17	19.27	25.21	20.06	10.04	17.59	12.22
Merged-chr15-5432231-3	chr15	5432152	5432352	+	889.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64066.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	12.52	11.07	26.24	5.63	9.0	26.97	15.61	4.79	26.95	22.09	19.6	9.4
Merged-chr11-116666798-3	chr11	116666706	116666906	+	889.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163318, intron 4 of 4)	intron (NM_001163318, intron 4 of 4)	-4854.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	25.04	18.11	19.4	23.33	23.73	26.34	5.65	7.77	27.73	10.54	18.09	14.72
Merged-chr4-75315201-3	chr4	75315099	75315299	+	889.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26|LTR|ERVK	-36907.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	7.27	5.53	14.26	10.46	12.68	19.44	19.27	12.81	21.83	22.09	29.65	5.33
Merged-chr12-84176842-3	chr12	84176749	84176949	+	889.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17166.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	23.82	12.83	17.11	11.26	15.14	23.2	5.31	11.89	21.05	18.58	13.06	7.83
Merged-chrX-167166610-3	chrX	167166500	167166700	+	889.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	42618.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	14.94	5.28	10.27	13.27	13.09	10.66	9.3	9.17	20.65	14.56	24.12	15.04
Merged-chr5-125408148-3	chr5	125408053	125408253	+	889.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18136.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	11.31	16.85	12.55	20.51	18.82	22.58	10.3	18.95	22.62	13.05	32.66	16.29
Merged-chr6-50978778-2	chr6	50978658	50978858	+	889.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	202643.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	5.25	3.27	9.7	6.03	16.77	10.03	7.31	6.76	8.46	5.52	19.6	13.47
Merged-chr2-79087359-3	chr2	79087251	79087451	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168075.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	10.09	13.58	17.11	11.66	12.68	14.11	10.3	11.61	7.87	12.55	17.59	12.53
Merged-chr16-59559786-3	chr16	59559702	59559902	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4050.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	11.31	6.29	7.42	9.65	14.73	12.23	6.31	11.21	16.13	19.08	30.15	10.34
Merged-chr4-34081263-1	chr4	34081163	34081363	+	889.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31196.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.42	2.52	6.85	4.02	0.41	8.47	7.64	8.75	7.67	4.02	10.05	1.57
Merged-chr8-35707065-1	chr8	35706965	35707165	+	889.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118045.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	0.75	0.0	3.22	1.64	1.88	0.66	1.15	19.08	16.07	22.11	10.02
Merged-chr10-59879003-3	chr10	59878905	59879105	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	-586.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	4.04	15.09	11.98	17.7	17.18	11.6	10.96	14.36	15.54	14.06	18.59	10.65
Merged-chr10-93576122-1	chr10	93576022	93576222	+	889.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-13291.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	6.06	4.02	6.28	8.85	0.82	5.33	1.99	4.88	14.95	2.51	14.57	13.16
Merged-chr5-117181914-3	chr5	117181812	117182012	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	48324.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	20.19	10.06	27.95	18.5	20.86	13.48	20.59	30.84	7.47	10.54	17.08	10.96
Merged-chr6-16855218-1	chr6	16855118	16855318	+	889.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	43223.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	7.67	4.78	2.28	3.22	7.36	9.09	4.32	10.77	8.85	8.54	3.01	5.01
Merged-chr8-3353538-3	chr8	3353384	3353584	+	889.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033378)	promoter-TSS (NM_001033378)	69.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	6.06	11.57	9.7	7.64	9.0	10.03	25.24	11.36	9.83	10.54	19.6	10.02
Merged-chr1-136124446-2	chr1	136124342	136124542	+	889.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6741.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	8.08	4.78	25.1	8.85	15.55	14.11	9.63	18.79	10.23	9.04	17.08	19.74
Merged-chr2-34727486-3	chr2	34727345	34727545	+	889.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 4 of 26)	intron (NR_151469, intron 4 of 26)	27787.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	8.48	14.34	11.98	8.85	5.73	15.05	3.65	10.88	20.85	19.58	12.56	9.08
Merged-chr9-74938827-1	chr9	74938727	74938927	+	889.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14053.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	1.21	1.26	2.28	4.42	2.05	0.63	2.66	3.79	10.62	7.03	16.58	10.02
Merged-chr1-120948573-3	chr1	120948469	120948669	+	889.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-138836.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	8.48	12.07	3.42	16.09	9.41	9.41	10.96	12.73	16.52	12.55	18.09	7.21
Merged-chr3-152262881-3	chr3	152262775	152262975	+	889.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	2920.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	16.96	11.57	9.13	22.12	15.55	9.41	13.29	29.58	18.29	8.54	15.58	14.72
Merged-chr1-171649069-3	chr1	171648960	171649160	+	889.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347184)	promoter-TSS (NM_001347184)	-61.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	14.54	15.85	20.54	12.07	11.86	17.87	9.3	10.37	27.14	11.55	8.54	7.83
Merged-chr19-46934259-1	chr19	46934159	46934359	+	889.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029810, intron 2 of 17)	L1ME1|LINE|L1	28092.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.65	2.26	3.42	4.83	12.68	8.78	12.95	12.11	3.93	2.01	5.53	5.01
Merged-chr18-5760474-1	chr18	5760374	5760574	+	889.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360982, intron 4 of 7)	intron (NM_001360982, intron 4 of 7)	167827.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.44	0.75	7.42	2.41	11.86	13.8	11.63	8.64	0.39	0.5	1.51	1.25
Merged-chr8-72815945-1	chr8	72815845	72816045	+	889.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010687, exon 15 of 15)	exon (NM_010687, exon 15 of 15)	54286.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	1.62	2.52	3.99	6.44	15.96	10.35	12.29	18.59	5.51	3.01	12.56	3.13
Merged-chr14-25609557-3	chr14	25609455	25609655	+	889.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	6042.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	23.02	26.91	42.21	43.44	31.5	48.92	31.22	34.04	9.83	8.03	25.63	7.52
Merged-chr13-5592060-3	chr13	5591964	5592164	+	889.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	266028.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.48	9.81	4.56	9.65	31.09	27.91	15.94	16.04	31.86	18.08	37.69	20.68
Merged-chr3-37705027-2	chr3	37704914	37705114	+	889.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	19346.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	5.25	0.25	0.57	1.61	11.45	16.31	9.3	11.52	12.78	9.54	30.65	4.07
Merged-chr16-38456838-2	chr16	38456760	38456960	+	889.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2073.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	14.13	7.29	10.27	8.04	6.55	7.21	18.27	16.63	17.11	12.55	18.59	7.21
Merged-chr8-121850133-3	chr8	121850056	121850256	+	889.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20587.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	16.96	13.58	8.56	18.1	8.59	17.87	8.3	12.14	15.54	7.03	29.14	18.48
Merged-chr10-86977480-3	chr10	86977378	86977578	+	889.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	30464.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.85	6.79	18.25	20.11	15.96	7.21	12.95	20.36	10.42	5.02	13.57	4.39
Merged-chr6-92287125-3	chr6	92287010	92287210	+	889.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42460.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	11.31	8.8	9.13	12.87	5.32	21.32	16.94	18.45	42.48	35.65	64.32	29.13
Merged-chr10-122641599-3	chr10	122641488	122641688	+	889.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6751.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	13.33	14.59	14.83	6.84	19.23	17.56	10.96	22.74	19.47	17.07	12.56	9.71
Merged-chr5-30973894-3	chr5	30973786	30973986	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_053085, exon 3 of 3)	3' UTR (NM_053085, exon 3 of 3)	5209.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	16.96	10.56	10.27	24.13	9.41	9.41	11.96	13.01	26.55	22.09	51.76	23.81
Merged-chr12-44858301-3	chr12	44858202	44858402	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 5 of 5)	intron (NM_144552, intron 5 of 5)	216181.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	7.27	5.53	12.55	14.48	10.64	11.6	16.61	27.17	18.49	18.08	41.2	14.1
Merged-chr10-58350770-3	chr10	58350700	58350900	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-1163.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	14.54	4.53	13.12	14.48	8.59	11.29	20.26	16.32	15.54	19.58	13.06	15.35
Merged-chr11-67537564-3	chr11	67537458	67537658	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	4560.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	13.73	10.82	19.97	4.83	4.09	9.41	4.65	9.08	13.96	11.55	27.64	12.53
Merged-chr4-43474127-3	chr4	43473974	43474174	+	889.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9635.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	5.65	8.8	6.85	8.04	4.91	9.72	3.65	5.33	12.39	16.07	15.58	4.7
Merged-chr7-141370746-3	chr7	141370645	141370845	+	889.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5635.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	6.86	8.8	10.84	11.26	21.68	13.48	11.63	16.21	16.52	15.06	19.6	8.14
Merged-chr10-93242330-3	chr10	93242228	93242428	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146239)	TTS (NM_146239)	68831.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	23.42	7.8	22.82	35.8	4.91	12.86	20.26	24.79	10.23	8.03	24.62	11.9
Merged-chr2-27306910-1	chr2	27306810	27307010	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	L1MD|LINE|L1	-59607.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	8.48	3.27	5.7	6.84	9.0	4.39	5.65	9.08	10.03	2.51	5.53	5.33
Merged-chr18-55282547-1	chr18	55282447	55282647	+	889.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-289956.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.8	0.0	0.0	0.0	0.0	16.92	22.59	15.58	6.27
Merged-chr6-93066434-1	chr6	93066334	93066534	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	125852.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.4	0.0	0.0	2.82	1.23	1.57	6.98	6.28	0.2	0.0	0.5	0.0
Merged-chr17-33904104-3	chr17	33904001	33904201	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1034.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	15.75	7.8	13.69	6.84	18.41	47.66	18.93	16.65	37.76	43.68	31.15	20.99
Merged-chr15-80035650-2	chr15	80035552	80035752	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20844.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	14.94	6.54	18.83	9.25	13.5	14.11	18.6	18.98	7.28	7.03	4.52	7.83
Merged-chr17-36865760-1	chr17	36865660	36865860	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177872, intron 2 of 6)	MTD|LTR|ERVL-MaLR	1427.0	NM_001024134	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	5.65	2.26	3.42	1.61	4.91	3.45	5.65	11.8	1.97	1.0	1.51	5.33
Merged-chr18-88910232-1	chr18	88910132	88910332	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16025.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.86	3.77	5.7	5.63	7.36	3.45	8.97	18.22	0.79	0.0	6.53	8.14
Merged-chr5-103927637-3	chr5	103927540	103927740	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16381.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	9.69	10.56	4.56	6.84	15.96	14.42	11.63	15.87	21.44	14.06	14.57	14.41
Merged-chr4-125015931-3	chr4	125015845	125016045	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14069.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	1.62	8.55	12.55	4.83	13.09	16.62	6.64	8.21	25.37	15.06	10.05	13.78
Merged-chr16-85455380-1	chr16	85455280	85455480	+	889.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144853)	TTS (NM_144853)	94993.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	4.04	2.01	4.56	0.8	0.0	0.0	2.66	0.45	15.93	6.53	3.01	10.02
Merged-chr2-167335917-1	chr2	167335817	167336017	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13261.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.65	2.01	5.13	0.8	9.82	5.96	5.65	12.95	7.67	2.51	4.02	4.39
Merged-chr11-101708632-3	chr11	101708533	101708733	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24323.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	10.09	10.06	27.95	12.87	18.0	12.23	12.62	21.34	24.78	12.55	30.15	15.04
Merged-chr12-32638341-1	chr12	32638241	32638441	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-181994.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.23	3.52	2.85	7.24	5.32	2.2	7.31	7.01	1.77	4.02	7.54	3.13
Merged-chr12-83594867-1	chr12	83594767	83594967	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183154, exon 2 of 12)	exon (NM_183154, exon 2 of 12)	2355.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	7.67	9.31	3.42	1.21	11.05	21.32	6.98	2.41	3.34	2.01	3.01	3.45
Merged-chr19-15829297-2	chr19	15829208	15829408	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95314.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	7.67	9.31	26.24	14.08	23.73	13.48	18.6	29.36	7.67	7.03	4.52	11.28
Merged-chr12-112707154-3	chr12	112707068	112707268	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15006.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	12.11	9.31	8.56	10.05	19.64	28.85	15.94	26.13	23.6	19.08	22.11	14.1
Merged-chr7-112213682-1	chr7	112213582	112213782	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12154.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	6.86	2.52	3.42	4.83	9.82	4.7	2.66	11.92	1.18	1.0	1.0	3.45
Merged-chr15-95907074-3	chr15	95906979	95907179	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-77007.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	18.57	8.3	23.39	12.07	22.09	22.89	16.28	13.4	14.95	13.56	14.57	17.86
Merged-chr15-31413123-1	chr15	31413023	31413223	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	40566.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	4.04	2.01	0.0	5.63	10.23	13.17	5.98	6.98	5.9	9.04	8.04	5.33
Merged-chr11-3123286-1	chr11	3123186	3123386	+	889.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	-735.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	6.86	3.02	3.42	3.22	10.64	5.96	2.33	5.21	18.49	19.58	19.09	6.27
Merged-chr10-127509101-3	chr10	127509004	127509204	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177707)	TTS (NM_177707)	-5835.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	12.52	12.07	2.28	5.63	10.23	19.76	3.32	9.53	12.59	9.54	19.6	4.39
Merged-chr12-8429951-1	chr12	8429851	8430051	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70058.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.85	2.01	2.28	2.41	3.68	6.27	8.97	13.12	2.36	3.51	3.52	0.94
Merged-chr1-56100386-1	chr1	56100286	56100486	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81408.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.0	0.0	0.0	0.0	8.18	11.6	4.98	16.54	0.39	0.0	0.0	0.63
Merged-chr10-17767104-1	chr10	17767004	17767204	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29115.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.04	4.28	3.99	3.22	10.64	18.5	15.28	16.57	3.54	7.53	0.0	2.19
Merged-chr3-90292438-3	chr3	90292342	90292542	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22293.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	13.33	11.32	23.96	15.28	16.77	17.56	9.63	13.65	9.64	12.05	27.13	8.14
Merged-chr7-126199876-3	chr7	126199797	126199997	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	604.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	10.09	10.82	14.83	12.47	13.91	8.15	12.29	5.44	24.39	10.54	13.06	16.6
Merged-chr6-37871490-3	chr6	37871399	37871599	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145076, intron 1 of 18)	CpG	688.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	10.5	14.09	13.12	14.88	14.32	6.9	7.31	11.13	19.87	18.58	9.04	11.9
Merged-chr17-31305054-3	chr17	31304958	31305158	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	8834.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	26.65	26.16	22.82	12.47	18.82	19.76	13.62	22.29	25.18	11.05	31.15	13.47
Merged-chr11-89051965-2	chr11	89051873	89052073	+	888.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019505, intron 3 of 10)	L1MB8|LINE|L1	8775.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	20.59	20.37	13.69	17.7	0.82	5.64	5.98	5.3	15.74	10.04	18.09	9.4
Merged-chr19-43709862-3	chr19	43709738	43709938	+	888.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	20149.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	12.52	9.81	13.12	2.41	10.64	15.37	15.61	5.13	27.93	33.14	43.21	15.04
Merged-chr12-11178162-2	chr12	11177971	11178171	+	888.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26431.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	6.46	4.78	6.85	3.22	9.0	8.47	6.64	8.38	0.0	0.5	0.0	0.94
Merged-chr7-122939330-3	chr7	122939227	122939427	+	888.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31132.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	18.17	12.83	21.11	16.89	21.68	12.54	5.31	16.99	21.24	13.05	17.59	11.9
Merged-chr2-167922031-3	chr2	167921933	167922133	+	888.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10294.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.27	2.77	16.54	12.07	13.91	21.95	18.6	20.78	11.41	8.03	19.6	17.23
Merged-chr7-43396981-3	chr7	43396871	43397071	+	888.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11309.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	11.31	7.29	28.52	21.32	12.68	19.44	17.27	23.02	11.41	8.03	18.09	12.22
Merged-chr4-24597131-3	chr4	24596997	24597197	+	888.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149739, intron 22 of 24)	intron (NR_149739, intron 22 of 24)	100646.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	11.31	8.55	11.41	8.85	10.64	13.8	15.94	15.17	9.05	14.06	18.59	9.4
Merged-chr4-133729650-2	chr4	133729578	133729778	+	888.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-12570.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	14.94	7.8	2.28	4.42	8.59	14.11	5.65	9.03	5.51	2.51	3.01	0.31
Merged-chr13-113580499-2	chr13	113580398	113580598	+	888.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38066.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	2.42	2.01	2.85	2.82	12.27	10.35	8.97	13.29	11.01	2.51	19.09	13.47
Merged-chr15-59654655-3	chr15	59654555	59654755	+	888.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144549, exon 3 of 3)	exon (NM_144549, exon 3 of 3)	6001.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	18.98	10.31	11.98	13.67	18.0	17.87	13.62	22.43	18.88	11.05	17.59	6.27
Merged-chr7-31085307-1	chr7	31085207	31085407	+	888.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8610.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	6.46	2.26	0.0	1.21	15.55	14.74	10.3	8.78	5.51	1.0	2.51	1.57
Merged-chr10-121498839-6	chr10	121498756	121498956	+	888.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22606.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	14.94	7.29	18.83	10.46	28.64	19.44	20.59	29.27	27.34	13.05	25.63	11.9
Merged-chr6-38939271-3	chr6	38939166	38939366	+	888.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	20280.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	14.13	7.29	15.4	12.47	15.55	17.87	14.95	33.59	26.75	15.06	17.08	15.04
Merged-chr15-89179095-3	chr15	89178989	89179189	+	888.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1699.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	18.17	20.37	10.27	10.05	24.55	19.76	5.31	11.75	32.26	20.59	26.63	16.92
Merged-chr15-41765952-2	chr15	41765862	41766062	+	888.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	L1MA4|LINE|L1	-23033.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	8.88	5.79	6.28	13.67	31.09	14.42	19.27	36.08	15.14	9.04	36.18	12.22
Merged-chr16-29453470-3	chr16	29453374	29453574	+	888.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74742.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	13.33	14.09	10.27	7.24	18.0	28.22	18.93	33.56	26.36	24.1	52.26	12.22
Merged-chr8-10832098-3	chr8	10831995	10832195	+	888.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50359.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	23.42	24.15	34.8	17.7	17.18	10.03	15.94	18.2	18.1	8.54	16.58	9.4
Merged-chr1-156921755-3	chr1	156921666	156921866	+	888.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	17621.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	11.31	5.28	5.7	22.93	18.0	18.19	8.64	20.19	35.01	16.57	37.69	23.49
Merged-chr4-131921034-2	chr4	131920948	131921148	+	888.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-723.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	8.48	10.56	5.13	8.45	13.5	12.54	11.29	10.77	5.7	8.54	6.03	8.14
Merged-chr11-54563037-2	chr11	54562933	54563133	+	888.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 5 of 28)	intron (NM_001252494, intron 5 of 28)	-33113.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.65	6.04	6.85	6.44	8.59	9.41	7.64	6.48	12.19	23.6	7.54	4.7
Merged-chr8-25012837-4	chr8	25012685	25012885	+	888.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	4137.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	16.15	6.79	8.56	6.44	9.0	5.64	6.31	8.86	16.13	10.04	16.08	10.65
Merged-chr5-43799740-2	chr5	43799641	43799841	+	888.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17592.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	3.23	9.06	3.42	4.83	24.14	13.17	24.91	21.25	13.77	19.08	9.04	5.33
Merged-chr16-16042272-3	chr16	16042169	16042369	+	888.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 6 of 18)	Lx2|LINE|L1	104582.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	14.13	10.82	9.13	11.26	21.68	26.34	15.61	6.81	26.95	28.12	25.12	9.71
Merged-chr10-34167187-3	chr10	34167091	34167291	+	888.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-39219.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	10.5	8.8	15.97	4.42	27.0	28.54	18.27	20.5	16.13	30.13	20.1	13.16
Merged-chr8-83736809-3	chr8	83736710	83736910	+	888.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	4501.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	24.23	15.09	17.68	27.35	9.0	8.47	6.64	7.04	44.45	26.11	29.14	40.41
Merged-chr2-29788261-3	chr2	29788150	29788350	+	888.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	-579.0	NM_001290495	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	14.54	4.53	17.68	6.84	9.41	14.11	5.31	9.39	21.83	18.08	15.58	9.71
Merged-chr10-81431867-3	chr10	81431680	81431880	+	888.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-4607.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	9.29	6.54	13.69	5.63	10.23	5.96	2.66	4.99	13.37	11.55	16.08	13.47
Merged-chr13-56335507-1	chr13	56335407	56335607	+	888.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27393.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	4.04	3.02	0.57	2.41	13.5	2.51	12.95	8.83	7.67	9.54	11.05	7.21
Merged-chr8-22228770-1	chr8	22228670	22228870	+	888.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205253, intron 1 of 3)	intron (NM_001205253, intron 1 of 3)	1467.0	NM_001293688	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	7.67	6.04	7.42	8.04	0.0	9.41	8.97	12.53	3.54	3.01	5.02	8.77
Merged-chr1-170555087-3	chr1	170554975	170555175	+	888.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	2035.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	12.11	4.28	3.99	10.05	22.91	21.01	20.59	34.71	29.31	28.62	23.11	23.18
Merged-chr15-5126653-1	chr15	5126553	5126753	+	888.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	8232.0	NR_028091	100302529.0		NR_028091		Snord72	MBII-240	small nucleolar RNA, C/D box 72	snoRNA	4.04	1.01	7.99	1.61	13.09	8.78	3.32	9.53	4.13	8.54	9.55	4.07
Merged-chr14-121422104-2	chr14	121422022	121422222	+	888.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42892.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.65	2.01	2.85	9.25	14.32	6.59	14.28	19.77	14.16	4.52	14.57	5.33
Merged-chr16-94502278-3	chr16	94502188	94502388	+	888.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	24341.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	13.73	5.03	15.4	10.46	20.86	14.11	20.93	44.27	6.49	10.04	15.07	14.41
Merged-chr4-83265779-2	chr4	83265683	83265883	+	888.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58406.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	9.69	11.07	12.55	19.71	14.73	11.92	7.97	12.11	4.33	1.51	1.51	0.94
Merged-chr4-32239990-3	chr4	32239889	32240089	+	888.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-177446.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	8.08	14.59	10.84	7.24	9.82	11.92	20.26	18.59	12.39	13.05	23.11	14.1
Merged-chr7-114301702-1	chr7	114301602	114301802	+	888.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-25586.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.04	1.01	7.99	11.26	18.41	14.11	7.31	17.94	2.95	3.01	2.51	1.57
Merged-chr4-24620585-3	chr4	24620499	24620699	+	888.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355618, intron 9 of 9)	intron (NM_001355618, intron 9 of 9)	124148.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	18.98	7.8	12.55	25.34	16.36	13.17	11.29	22.23	15.93	18.58	28.64	8.77
Merged-chr9-47671273-2	chr9	47671170	47671370	+	888.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	140918.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	12.11	8.3	25.1	12.47	14.73	8.15	10.96	13.79	1.77	3.51	6.03	2.19
Merged-chr18-38227901-3	chr18	38227812	38228012	+	888.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	-18150.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	10.5	10.82	11.41	29.76	18.0	10.66	16.61	17.36	16.52	10.04	19.09	4.39
Merged-chr11-118312473-3	chr11	118312400	118312600	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	-22256.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	13.33	10.82	11.41	8.04	21.27	35.75	20.59	19.43	28.13	23.6	15.58	7.21
Merged-chr4-59822253-3	chr4	59822101	59822301	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	RMER6A|LTR|ERVK	16551.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	9.29	5.79	17.11	14.88	24.96	10.35	18.6	17.64	21.24	16.07	8.04	6.27
Merged-chr12-75733455-3	chr12	75733339	75733539	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	2290.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	15.34	9.06	14.83	12.47	16.36	12.54	9.97	13.57	8.85	13.56	20.6	11.59
Merged-chr10-118894052-3	chr10	118893954	118894154	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25151.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.86	4.02	17.11	19.31	15.96	8.78	12.29	13.23	13.77	12.05	25.63	10.02
Merged-chr6-82702898-3	chr6	82702807	82703007	+	888.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50042.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	10.5	16.6	13.69	9.25	19.23	18.81	4.65	16.6	21.24	19.08	36.18	15.04
Merged-chr18-47327223-1	chr18	47327123	47327323	+	888.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	41645.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	2.42	3.02	5.13	4.42	7.36	10.66	14.62	13.18	2.16	1.0	2.51	4.39
Merged-chr11-97279820-1	chr11	97279720	97279920	+	888.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008942, intron 1 of 22)	CpG	756.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	8.08	4.02	7.42	6.84	6.95	5.02	6.98	8.64	4.33	7.03	5.02	2.51
Merged-chr7-96494153-2	chr7	96494046	96494246	+	888.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-152182.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	7.67	9.81	7.99	14.08	22.5	24.46	33.22	34.68	1.38	3.01	3.52	0.63
Merged-chr4-136891038-4	chr4	136890853	136891053	+	888.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1961.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	9.29	10.31	15.4	6.44	18.82	17.87	10.3	12.93	18.1	17.07	14.57	14.1
Merged-chr17-71704154-1	chr17	71704054	71704254	+	888.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	30893.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	3.23	6.29	3.42	12.07	7.77	12.54	9.3	7.82	7.87	3.01	6.03	6.27
Merged-chr14-7972185-3	chr14	7972106	7972306	+	888.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 6 of 7)	intron (NM_007870, intron 6 of 7)	21976.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	20.59	32.2	14.83	10.46	13.91	21.64	8.97	9.17	21.05	9.54	16.08	10.02
Merged-chrUn_JH584304-4236-1	chrUn_JH584304	4136	4336	+	888.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55453.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.36	11.55	10.05	11.9
Merged-chr16-35982637-3	chr16	35982520	35982720	+	888.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-743.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	15.34	11.82	3.42	4.02	9.0	12.54	4.98	6.9	12.39	16.57	12.06	1.57
Merged-chr13-107781966-3	chr13	107781864	107782064	+	888.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	94567.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	8.88	9.56	7.42	10.86	20.46	26.65	12.29	23.27	25.37	20.08	26.63	19.74
Merged-chr6-71632291-2	chr6	71632209	71632409	+	888.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362200, intron 1 of 25)	CpG	377.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	19.38	8.3	10.27	13.27	11.45	9.72	18.6	15.42	15.74	10.54	19.6	10.34
Merged-chr11-83560598-3	chr11	83560494	83560694	+	888.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	18042.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	10.09	7.55	17.68	9.65	31.09	32.3	19.27	21.34	23.8	21.09	40.2	15.04
Merged-chr12-86817778-3	chr12	86817669	86817869	+	888.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67045.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	21.8	10.06	16.54	9.25	19.64	19.44	10.96	13.46	26.36	23.1	48.24	14.1
Merged-chr5-65535577-3	chr5	65535495	65535695	+	888.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1650.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	12.52	18.36	11.41	12.47	14.73	11.6	7.31	10.26	20.46	14.06	11.05	18.17
Merged-chr13-5716956-3	chr13	5716862	5717062	+	888.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	141130.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	16.56	5.53	11.98	13.27	18.0	10.35	12.29	17.16	19.87	29.12	24.62	15.04
Merged-chr7-4471359-2	chr7	4471272	4471472	+	888.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028416)	promoter-TSS (NR_028416)	-488.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	14.94	10.82	6.85	4.83	6.14	13.8	2.66	11.41	12.19	3.01	8.54	4.07
Merged-chr11-55460745-3	chr11	55460648	55460848	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	460.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.85	12.07	8.56	7.64	7.77	9.72	5.98	8.8	13.77	11.05	12.06	9.4
Merged-chr15-5355512-1	chr15	5355412	5355612	+	888.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-111325.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.85	5.79	5.7	6.44	13.09	13.17	10.63	13.43	9.05	4.02	13.06	4.7
Merged-chr7-127303219-1	chr7	127303119	127303319	+	888.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253873, intron 7 of 30)	ORR1G|LTR|ERVL-MaLR	6959.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	2.42	4.78	6.28	8.45	3.27	16.62	4.65	13.93	9.44	4.02	7.03	8.14
Merged-chr3-97761345-3	chr3	97761243	97761443	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	6671.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	18.98	11.07	20.54	22.93	12.68	10.98	12.62	11.02	13.37	6.03	5.53	5.95
Merged-chr14-54618003-3	chr14	54617937	54618137	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011186)	promoter-TSS (NM_011186)	-42.0	NM_011186	19173.0	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	12.11	10.56	7.42	8.04	19.64	18.19	9.97	7.23	29.11	23.6	18.59	15.66
Merged-chrX-99691148-3	chrX	99691046	99691246	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129923.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	7.27	7.8	6.85	26.14	18.41	10.98	11.29	23.61	7.47	14.06	32.16	21.3
Merged-chr1-57775114-1	chr1	57775014	57775214	+	888.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144882, intron 1 of 13)	CpG	253.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.63	2.77	4.56	12.87	12.68	8.47	16.61	11.72	5.31	7.53	14.57	3.76
Merged-chr18-60501389-4	chr18	60501293	60501493	+	888.323853	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134133, exon 1 of 2)	5' UTR (NM_134133, exon 1 of 2)	590.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	3.63	9.56	11.98	8.85	8.59	0.94	4.65	2.3	4.52	11.55	8.04	9.08
Merged-chr12-36205914-2	chr12	36205829	36206029	+	888.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	12289.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	16.96	11.82	10.84	15.69	21.68	10.66	8.97	13.85	4.13	7.53	5.02	3.13
Merged-chr8-70856956-3	chr8	70856826	70857026	+	888.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032397)	promoter-TSS (NM_032397)	82.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	9.69	9.06	9.13	4.42	13.09	15.05	8.97	4.79	10.03	9.04	11.56	13.16
Merged-chr2-180701275-3	chr2	180701182	180701382	+	888.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	820.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	10.9	11.07	2.85	1.61	6.55	19.13	19.27	5.92	15.93	13.05	24.62	14.1
Merged-chr13-46634260-3	chr13	46634150	46634350	+	888.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-35272.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	20.59	20.37	31.38	27.75	20.46	10.66	6.64	15.7	25.18	10.54	22.11	15.35
Merged-chr11-35308648-2	chr11	35308552	35308752	+	888.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	187196.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	6.86	3.52	4.56	6.03	8.18	5.02	10.96	10.35	33.04	30.13	25.63	9.4
Merged-chr1-93401722-3	chr1	93401634	93401834	+	888.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207031, intron 20 of 23)	(TGG)n|Simple_repeat|Simple_repeat	27838.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	10.09	12.32	9.13	8.45	12.68	15.99	15.61	16.12	10.82	15.57	32.16	14.1
Merged-chr3-90084035-3	chr3	90083891	90084091	+	888.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	4470.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	19.38	13.08	11.98	15.69	47.05	34.81	32.55	49.99	16.52	11.55	9.55	9.08
Merged-chr4-127235975-3	chr4	127235869	127236069	+	888.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198618, intron 11 of 11)	CpG	-7815.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	16.56	9.06	13.12	10.46	12.68	15.37	11.96	15.59	15.54	13.05	20.1	9.08
Merged-chr9-103347275-3	chr9	103347185	103347385	+	888.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176979, intron 27 of 27)	RSINE1|SINE|B4	17694.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	15.34	6.54	18.25	8.04	11.86	8.15	8.64	13.51	30.09	19.58	27.64	16.92
Merged-chr11-32556616-3	chr11	32556521	32556721	+	888.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	23355.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	20.59	12.07	7.42	9.25	15.55	19.13	22.26	22.18	16.33	14.56	15.58	10.65
Merged-chr6-56691390-2	chr6	56691273	56691473	+	888.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13326.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	11.31	11.07	7.42	15.28	11.45	13.17	11.96	15.79	4.52	8.03	9.04	4.7
Merged-chr11-83619229-1	chr11	83619129	83619329	+	888.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-26142.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.44	5.28	5.7	5.23	16.36	10.98	4.65	11.13	5.9	4.02	9.55	4.07
Merged-chr5-29553179-3	chr5	29553092	29553292	+	888.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15243.0	NR_102704	619355.0	Mm.426744	NR_102704		Gm6083	-	developmental pluripotency associated 5 pseudogene	pseudo	12.52	13.58	11.41	5.63	10.64	10.98	5.31	10.15	13.57	20.08	11.05	13.16
Merged-chr6-58735284-2	chr6	58735198	58735398	+	888.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96167.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	4.85	8.05	1.14	4.83	20.46	15.05	17.27	28.46	8.06	17.57	21.1	7.21
Merged-chr7-81176576-1	chr7	81176476	81176676	+	888.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37228.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	1.62	5.03	11.98	2.41	8.18	13.8	6.98	7.49	2.95	4.52	16.58	5.01
Merged-chr9-40732589-2	chr9	40732477	40732677	+	888.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	46613.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	14.94	6.54	12.55	20.91	26.18	18.81	18.93	21.22	0.79	0.0	0.0	0.94
Merged-chr10-88574162-5	chr10	88574071	88574271	+	888.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	30981.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.04	7.04	5.13	6.44	7.77	11.6	11.96	9.95	15.54	10.54	6.03	10.02
Merged-chr15-103260525-3	chr15	103260303	103260503	+	888.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2000.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	6.06	2.77	1.14	2.82	2.45	2.2	2.66	1.93	4.13	6.03	6.53	5.64
Merged-chr12-64966302-3	chr12	64966249	64966449	+	888.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	607.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	14.54	13.08	9.7	11.26	10.64	11.92	18.93	11.83	14.16	14.06	18.59	14.72
Merged-chr14-57357199-3	chr14	57357090	57357290	+	888.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 3 of 7)	intron (NM_030004, intron 3 of 7)	41293.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	23.42	22.39	14.83	14.88	10.64	18.81	6.64	11.16	15.54	6.53	17.59	4.39
Merged-chr1-193876585-3	chr1	193876477	193876677	+	888.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	346182.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	18.17	13.08	23.39	22.93	8.18	10.98	11.96	24.25	9.44	7.53	14.57	9.4
Merged-chr14-55122130-3	chr14	55122022	55122222	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5187.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	21.4	13.33	9.13	8.45	12.27	19.13	7.97	13.15	18.49	8.54	20.1	12.53
Merged-chr14-54757227-3	chr14	54757145	54757345	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	24641.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.86	6.04	23.96	11.66	18.0	15.68	23.25	26.94	50.75	34.14	77.88	47.62
Merged-chr2-101696439-3	chr2	101696344	101696544	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303273, intron 6 of 6)	intron (NM_001303273, intron 6 of 6)	18024.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	12.92	6.04	10.84	18.5	14.73	15.68	9.63	20.86	9.83	8.54	19.6	11.59
Merged-chr1-181922223-3	chr1	181922123	181922323	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79822.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	13.33	8.3	21.68	10.46	13.09	14.11	15.94	11.02	9.64	15.06	7.03	8.46
Merged-chr6-85374164-1	chr6	85374064	85374264	+	888.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177466, exon 1 of 5)	exon (NM_177466, exon 1 of 5)	470.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	7.67	3.52	4.56	9.25	14.32	8.78	16.61	9.93	4.33	11.55	14.57	9.4
Merged-chr10-130247206-1	chr10	130247106	130247306	+	888.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	32932.0	NM_001329489	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	8.08	2.52	2.28	5.63	14.73	10.03	13.95	10.26	8.46	6.03	4.02	9.4
Merged-chr14-46885029-3	chr14	46884908	46885108	+	888.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028966, exon 2 of 12)	exon (NM_028966, exon 2 of 12)	2043.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	16.56	11.57	13.69	12.47	12.27	16.31	9.97	19.71	18.49	8.54	8.54	6.58
Merged-chr6-134824570-2	chr6	134824417	134824617	+	888.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-5682.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	2.42	4.02	6.28	6.03	7.77	3.45	5.98	1.93	26.36	20.59	36.68	18.8
Merged-chr5-92491004-3	chr5	92490915	92491115	+	888.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	14642.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	10.09	11.07	21.11	5.63	28.64	30.1	33.88	19.37	21.24	23.1	18.09	11.28
Merged-chr13-81241296-3	chr13	81241197	81241397	+	888.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	277223.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	9.29	8.55	18.83	20.91	23.73	22.26	40.19	42.2	21.64	28.12	23.62	10.96
Merged-chr2-27668002-3	chr2	27667894	27668094	+	888.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9207.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	12.11	13.58	12.55	11.66	17.59	10.35	5.31	13.01	15.93	13.05	15.07	12.22
Merged-chr19-58943010-3	chr19	58942907	58943107	+	888.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	-418.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	17.36	3.27	12.55	7.24	10.64	29.16	29.23	33.2	39.34	44.69	34.67	36.34
Merged-chr5-34695713-3	chr5	34695614	34695814	+	888.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019497, intron 5 of 15)	intron (NM_019497, intron 5 of 15)	35335.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	14.54	9.06	11.41	33.38	28.23	18.19	23.92	33.93	9.64	9.54	19.09	11.9
Merged-chr4-141161602-3	chr4	141161509	141161709	+	888.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13687.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.46	10.82	7.99	11.66	10.23	19.13	28.23	24.0	19.87	11.05	30.15	13.16
Merged-chr1-152608951-2	chr1	152608834	152609034	+	888.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	16283.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.65	11.32	4.56	1.21	10.64	14.11	8.3	9.79	11.41	18.58	17.59	4.39
Merged-chr4-145211424-3	chr4	145211297	145211497	+	888.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011610)	TTS (NM_011610)	-16392.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.25	11.57	25.1	12.07	16.36	14.42	10.3	16.32	17.9	10.54	21.1	5.33
Merged-chr13-63566366-3	chr13	63566238	63566438	+	888.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008957)	promoter-TSS (NM_008957)	-603.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.04	8.05	13.12	10.86	13.09	15.68	6.31	18.95	26.75	29.12	22.11	15.35
Merged-chr17-67976279-1	chr17	67976179	67976379	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	-25339.0	NM_001347410	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	5.65	13.33	21.68	2.01	1.64	4.08	0.0	0.53	0.59	0.5	1.0	0.63
Merged-chr18-67186429-3	chr18	67186344	67186544	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-18915.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	82.37	79.48	88.99	84.86	97.78	118.84	87.03	119.02	9.24	14.56	12.56	8.46
Merged-chr8-81399336-1	chr8	81399236	81399436	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	56774.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.85	1.76	7.42	2.82	4.5	0.0	6.31	8.75	2.36	0.0	2.51	3.76
Merged-chr2-176708418-1	chr2	176708318	176708518	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	65.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	5.25	12.58	14.26	10.05	19.23	11.92	20.93	7.68	5.51	15.57	14.07	9.71
Merged-chr18-50053932-2	chr18	50053815	50054015	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155293)	promoter-TSS (NR_155293)	-253.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	21.0	11.07	12.55	13.27	8.18	17.25	10.3	15.17	17.9	21.09	16.58	10.65
Merged-chr3-83790235-1	chr3	83790135	83790335	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	23914.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	9.69	4.53	6.85	4.02	3.68	7.53	3.65	7.82	5.11	3.01	8.54	8.46
Merged-chr3-108047140-3	chr3	108047044	108047244	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	14.94	9.31	12.55	9.65	17.18	20.7	1.99	5.83	12.39	18.08	10.05	16.92
Merged-chr11-51917311-2	chr11	51917165	51917365	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-50366.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.06	4.53	6.85	2.82	6.55	5.33	5.98	6.48	9.05	7.03	10.05	7.21
Merged-chr16-18443580-1	chr16	18443480	18443680	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001353143, intron 8 of 16)	intron (NM_001353143, intron 8 of 16)	-16864.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	6.06	7.55	3.99	5.23	10.23	6.27	5.98	8.58	4.52	7.03	4.02	3.76
Merged-chr17-83730733-3	chr17	83730678	83730878	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	Lx8|LINE|L1	24615.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.25	1.51	8.56	12.47	14.73	3.14	9.97	25.46	6.49	5.02	19.09	9.4
Merged-chr1-171260636-1	chr1	171260536	171260736	+	888.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172845, exon 9 of 9)	3' UTR (NM_172845, exon 9 of 9)	-9692.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.4	0.25	4.56	0.0	0.82	0.0	0.33	0.0	16.52	16.07	12.06	14.1
Merged-chr1-124045092-1	chr1	124044992	124045192	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	467.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.63	1.51	0.0	5.63	3.27	1.88	7.64	5.58	6.49	3.51	2.01	1.88
Merged-chr9-41445309-1	chr9	41445209	41445409	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-29584.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	3.63	7.04	1.14	6.44	14.73	13.8	5.98	14.16	2.75	3.51	2.01	2.82
Merged-chr16-55815598-1	chr16	55815498	55815698	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159395, intron 10 of 12)	intron (NM_001159395, intron 10 of 12)	6540.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	12.52	7.29	4.56	3.62	8.18	5.64	1.33	3.08	4.72	6.03	7.03	0.94
Merged-chr7-35741073-2	chr7	35740962	35741162	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	B3|SINE|B2	13392.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	13.33	16.35	10.84	11.66	18.82	14.42	12.29	19.18	9.24	4.02	10.05	6.89
Merged-chr3-148899562-1	chr3	148899462	148899662	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	55073.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.23	2.01	3.99	1.61	3.68	9.41	1.99	7.4	2.36	2.01	5.02	0.94
Merged-chr4-53799470-1	chr4	53799370	53799570	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19765.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	4.85	2.52	5.7	17.7	8.18	11.6	10.63	20.78	4.72	8.54	9.04	0.94
Merged-chrX-159257243-3	chrX	159257128	159257328	+	887.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148945, intron 1 of 21)	intron (NM_148945, intron 1 of 21)	1446.0	NM_001346675	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	10.09	8.55	1.71	5.63	10.23	11.6	3.99	8.47	13.57	11.05	10.05	10.65
Merged-chr3-41563724-3	chr3	41563617	41563817	+	887.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	-34.0	NM_001130185	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	19.38	13.83	8.56	17.29	20.05	18.19	9.3	15.06	14.55	11.55	22.61	12.53
Merged-chr17-21962312-2	chr17	21962202	21962402	+	887.9500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	162.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	14.13	17.86	22.82	16.89	13.09	19.76	35.54	13.99	24.78	29.62	31.66	20.99
Merged-chr16-33785501-3	chr16	33785394	33785594	+	887.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8543.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	18.98	13.58	13.69	25.74	15.55	10.98	7.97	10.57	22.23	17.07	16.08	10.02
Merged-chr4-57950170-3	chr4	57950074	57950274	+	887.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6237.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	10.5	6.29	5.13	6.44	14.32	15.68	30.56	24.76	16.72	22.59	13.06	9.4
Merged-chr14-64834694-3	chr14	64834619	64834819	+	887.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115138.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	17.36	10.31	11.41	22.12	26.59	12.86	19.27	24.81	20.85	18.08	21.61	11.9
Merged-chr15-103514284-3	chr15	103514210	103514410	+	887.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-667.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	10.09	12.83	13.69	8.45	16.36	22.58	10.3	15.56	18.88	18.08	26.63	9.71
Merged-chr17-17827936-3	chr17	17827792	17827992	+	887.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2296.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	7.67	4.78	5.7	4.02	14.73	17.56	4.65	5.02	5.7	14.56	6.53	7.83
Merged-chr9-63642439-3	chr9	63642332	63642532	+	887.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151671, exon 10 of 10)	non-coding (NR_151671, exon 10 of 10)	39786.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	8.08	3.77	14.83	19.31	33.14	15.37	30.56	28.37	7.08	10.04	17.59	17.54
Merged-chr7-27933683-3	chr7	27933598	27933798	+	887.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4268.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	23.82	17.61	13.12	6.03	9.0	20.07	9.97	9.22	17.9	21.09	17.08	10.34
Merged-chr6-35544524-3	chr6	35544422	35544622	+	887.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4634.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	12.92	4.78	14.26	6.44	15.14	19.44	6.31	20.36	18.88	9.04	15.58	8.14
Merged-chr3-88454874-3	chr3	88454767	88454967	+	887.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	894.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	9.69	10.06	14.83	7.24	13.5	26.34	11.63	13.21	27.54	22.59	29.14	22.87
Merged-chr7-55874927-3	chr7	55874826	55875026	+	887.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164661, exon 7 of 32)	exon (NM_001164661, exon 7 of 32)	32855.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	16.96	15.34	21.11	16.89	6.14	9.72	14.28	15.0	11.21	12.05	11.05	9.71
Merged-chr15-73645300-3	chr15	73645177	73645377	+	887.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-20533.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	13.33	11.57	16.54	13.67	8.18	11.6	11.29	13.32	17.31	16.57	16.08	11.28
Merged-chr17-57359982-3	chr17	57359752	57359952	+	887.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 1 of 22)	intron (NM_001355722, intron 1 of 22)	1166.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.81	0.25	3.99	4.02	1.23	4.7	5.65	0.64	2.36	2.51	2.51	7.21
Merged-chr18-24653404-3	chr18	24653295	24653495	+	887.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-296.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	14.94	7.55	12.55	9.25	19.64	30.42	14.62	23.36	34.42	23.6	24.12	13.78
Merged-chr2-170164355-2	chr2	170164263	170164463	+	887.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21688.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.83	3.02	2.85	2.41	5.73	6.9	4.65	5.94	17.11	16.57	16.08	10.02
Merged-chr3-126923765-2	chr3	126923691	126923891	+	887.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001327939, exon 46 of 46)	3' UTR (NM_001327939, exon 46 of 46)	19595.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.42	6.04	2.85	6.03	4.91	5.33	7.97	7.35	16.33	7.03	23.62	5.01
Merged-chr15-98807936-3	chr15	98807783	98807983	+	887.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	42.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	15.75	5.28	7.99	11.26	5.32	6.59	9.3	11.36	12.98	11.05	12.56	14.1
Merged-chr4-34510574-3	chr4	34510473	34510673	+	887.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-40042.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	13.33	18.86	19.4	25.74	9.82	16.62	11.63	9.87	13.57	15.06	16.58	4.07
Merged-chr1-193852888-3	chr1	193852800	193853000	+	887.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-345370.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	16.56	10.06	15.97	5.63	13.09	24.15	6.98	5.78	24.19	17.57	10.05	5.01
Merged-chr18-90508507-3	chr18	90508414	90508614	+	887.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAP1-MM_LTR|LTR|ERVK	-1640.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	11.71	14.59	5.7	10.46	19.64	22.89	7.97	9.98	17.31	32.64	22.11	2.19
Merged-chr4-35100481-1	chr4	35100381	35100581	+	887.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-51574.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	9.29	11.57	3.99	3.62	4.91	9.72	14.95	7.65	6.49	5.52	1.51	10.02
Merged-chr1-95646203-1	chr1	95646103	95646303	+	887.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	21391.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	12.52	2.52	4.56	2.01	11.86	5.64	12.95	20.22	9.05	8.03	4.52	5.64
Merged-chr14-55788356-3	chr14	55788254	55788454	+	887.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019955, exon 2 of 10)	exon (NM_019955, exon 2 of 10)	503.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	18.57	18.36	16.54	8.85	17.59	11.92	10.96	14.02	13.96	9.04	19.09	17.86
Merged-chr16-14362297-3	chr16	14362174	14362374	+	887.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	716.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	16.15	26.66	10.84	5.63	5.73	44.84	11.96	10.01	45.83	48.7	26.13	10.96
Merged-chr4-40851704-3	chr4	40851597	40851797	+	887.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	-1559.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	10.09	8.3	8.56	4.83	16.36	17.87	13.95	18.22	15.34	18.58	19.6	10.02
Merged-chr12-17712556-3	chr12	17712454	17712654	+	887.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21745.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	12.52	10.06	5.13	6.44	4.5	15.99	6.64	10.57	13.96	18.08	9.04	6.89
Merged-chr2-122070192-3	chr2	122070092	122070292	+	887.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145531, intron 26 of 39)	intron (NM_145531, intron 26 of 39)	41609.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	15.75	12.83	23.96	28.15	9.82	16.93	13.62	22.07	16.72	10.54	15.58	11.9
Merged-chr1-36090243-3	chr1	36090184	36090384	+	887.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21884.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	12.52	9.56	5.13	4.83	25.36	22.89	7.31	14.44	9.24	8.03	17.08	6.27
Merged-chr5-100705917-3	chr5	100705823	100706023	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13793.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	6.46	10.31	25.1	12.47	12.68	19.76	7.64	12.42	9.83	7.03	5.53	13.78
Merged-chr7-56131760-1	chr7	56131660	56131860	+	887.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360080, intron 24 of 92)	intron (NM_001360080, intron 24 of 92)	81371.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	6.46	4.02	2.28	8.04	11.05	4.08	11.63	10.79	7.47	5.52	9.04	3.13
Merged-chr18-12947940-3	chr18	12947856	12948056	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6115.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	7.27	10.31	22.25	12.07	12.27	10.98	11.29	20.55	11.41	19.58	18.59	12.22
Merged-chr2-60316009-1	chr2	60315909	60316109	+	887.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013825, intron 27 of 34)	intron (NM_013825, intron 27 of 34)	-31525.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	4.44	3.02	6.28	4.42	13.5	13.17	8.3	24.7	11.41	5.02	8.54	5.01
Merged-chr15-95790230-1	chr15	95790130	95790330	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-613.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	14.54	8.8	28.52	26.14	9.82	10.03	14.95	8.33	11.41	17.57	14.57	11.28
Merged-chr15-79327479-3	chr15	79327394	79327594	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	877.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	24.63	13.58	11.41	10.86	14.32	21.01	11.29	11.3	17.11	16.07	17.08	9.08
Merged-chr18-79110416-1	chr18	79110316	79110516	+	887.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG-7115	-1025.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	10.5	6.79	2.85	1.21	6.95	6.59	4.32	8.36	3.15	5.02	14.07	6.27
Merged-chr5-102037744-3	chr5	102037642	102037842	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	32179.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.46	5.28	23.39	12.47	11.05	8.47	16.94	37.01	8.65	5.52	25.63	10.96
Merged-chr16-94725021-3	chr16	94724936	94725136	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113617.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	8.88	6.04	17.11	14.48	13.09	15.99	16.28	20.24	12.78	17.57	29.14	17.23
Merged-chr12-103345222-3	chr12	103345126	103345326	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	10775.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	15.34	9.56	27.95	10.86	10.64	8.47	7.97	12.36	16.92	9.04	15.58	14.72
Merged-chr2-102831733-2	chr2	102831633	102831833	+	887.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 9 of 13)	intron (NM_001039150, intron 9 of 13)	69932.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.62	1.51	5.7	0.8	11.86	1.57	5.65	10.37	14.95	10.04	12.56	9.71
Merged-chr1-178449353-2	chr1	178449262	178449462	+	887.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026626, intron 2 of 6)	intron (NM_026626, intron 2 of 6)	43344.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	4.44	5.79	4.56	4.42	9.82	12.54	2.99	12.36	24.0	18.08	19.09	8.77
Merged-chr2-109220588-4	chr2	109220468	109220668	+	887.6458130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	57722.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	2.02	7.8	13.69	6.84	7.36	6.59	7.64	5.21	13.57	13.05	4.52	2.82
Merged-chr2-162939835-3	chr2	162939750	162939950	+	887.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3615.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	17.77	12.83	9.13	7.64	24.96	19.13	25.91	24.9	22.62	31.13	15.07	20.68
Merged-chr1-85809444-3	chr1	85809352	85809552	+	887.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	15435.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	7.27	10.31	19.97	25.74	12.27	16.93	10.63	22.29	23.41	15.57	14.07	17.23
Merged-chr15-59413407-3	chr15	59413310	59413510	+	887.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	39212.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	14.13	10.06	30.8	11.26	19.64	34.81	19.93	29.78	31.08	20.08	47.23	9.71
Merged-chr4-120887894-3	chr4	120887803	120888003	+	887.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 5 of 7)	intron (NM_182929, intron 5 of 7)	33104.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	11.71	10.56	22.82	11.26	15.55	15.05	5.98	15.73	17.9	20.59	21.1	12.53
Merged-chr11-117912901-3	chr11	117912808	117913008	+	887.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39382.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	8.88	10.31	14.83	10.86	11.86	16.62	3.32	9.73	14.55	15.06	20.1	11.28
Merged-chr1-171011851-3	chr1	171011761	171011961	+	887.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7065.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	6.06	7.04	18.25	17.29	20.46	9.41	7.97	13.51	14.75	10.04	20.6	13.47
Merged-chr10-80674757-5	chr10	80674694	80674894	+	887.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	1499.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	12.52	20.63	7.99	5.23	11.05	16.62	6.98	4.07	15.54	16.57	5.02	7.52
Merged-chr13-113572223-3	chr13	113572126	113572326	+	887.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46338.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	11.71	7.04	9.7	6.44	27.82	31.67	10.96	28.82	45.43	34.65	42.21	23.18
Merged-chr16-17796498-3	chr16	17796402	17796602	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-780.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	18.98	10.56	14.83	11.66	6.14	10.98	7.31	9.11	8.85	12.05	10.55	8.46
Merged-chr13-100681831-3	chr13	100681737	100681937	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183115, exon 4 of 12)	exon (NM_183115, exon 4 of 12)	12356.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	9.29	5.03	14.83	11.66	21.68	24.77	17.27	24.14	28.72	40.67	31.66	30.39
Merged-chr15-98977498-3	chr15	98977401	98977601	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8464.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	17.77	25.4	6.85	10.46	16.77	24.46	10.63	11.94	15.14	18.08	10.55	8.46
Merged-chr11-119875047-3	chr11	119874982	119875182	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-7207.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	9.69	5.53	16.54	9.65	17.59	8.47	11.29	19.57	4.72	7.53	14.07	10.96
Merged-chr6-120478767-2	chr6	120478679	120478879	+	887.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	15028.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	8.08	5.03	3.42	5.23	12.27	14.11	11.96	9.08	14.75	15.06	4.02	9.08
Merged-chr2-84788492-3	chr2	84788392	84788592	+	887.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10336.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	8.48	15.85	15.97	17.29	7.36	9.41	11.96	14.8	26.75	21.09	27.64	13.78
Merged-chr3-76001395-1	chr3	76001295	76001495	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-44446.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	5.65	3.77	9.13	3.62	10.23	4.08	9.3	11.3	7.28	3.51	8.04	8.14
Merged-chr12-112589194-1	chr12	112589094	112589294	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	410.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	12.52	10.56	2.28	4.83	9.41	13.8	10.96	5.07	12.59	19.08	9.55	2.19
Merged-chr18-50054566-3	chr18	50054458	50054658	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155293)	promoter-TSS (NR_155293)	-896.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	11.71	14.59	14.83	9.65	11.86	18.5	19.27	19.35	23.8	13.56	18.09	7.83
Merged-chr12-70698484-1	chr12	70698384	70698584	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127030.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	8.08	2.77	5.13	10.05	9.82	4.08	4.65	13.04	1.38	0.0	2.01	0.31
Merged-chr11-61934804-2	chr11	61934700	61934900	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-4543.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	20.19	11.57	6.85	8.04	11.05	12.23	5.65	12.36	16.52	8.54	7.03	5.33
Merged-chr3-154842405-1	chr3	154842305	154842505	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177066, intron 21 of 24)	intron (NM_177066, intron 21 of 24)	131272.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	2.42	2.01	0.0	2.41	4.5	2.82	3.32	2.64	12.59	21.09	24.62	14.41
Merged-chr18-36345541-1	chr18	36345441	36345641	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3083.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	2.02	1.51	5.7	2.41	11.05	15.37	11.29	5.58	3.74	3.01	3.52	2.82
Merged-chr7-19692024-4	chr7	19691851	19692051	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007469, exon 2 of 3)	exon (NM_007469, exon 2 of 3)	708.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	7.67	11.07	9.7	6.03	20.05	10.66	40.86	24.34	32.26	22.09	26.63	21.93
Merged-chr4-62869811-1	chr4	62869711	62869911	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95763.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	5.25	2.01	6.28	20.51	15.55	5.33	11.63	9.59	0.79	0.0	0.0	0.63
Merged-chr11-97839634-1	chr11	97839534	97839734	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010688)	TTS (NM_010688)	-1146.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	1.62	3.27	10.27	2.82	5.32	11.92	1.33	4.85	14.36	14.06	17.59	13.78
Merged-chr17-13007113-2	chr17	13007007	13007207	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-732.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	5.25	5.53	2.28	0.8	6.95	14.42	9.63	1.96	15.34	6.03	11.56	0.94
Merged-chr2-68888311-3	chr2	68888190	68888390	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	26849.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	12.52	7.04	20.54	22.93	11.45	26.03	19.6	30.45	8.46	12.55	19.09	4.7
Merged-chr2-158143569-1	chr2	158143469	158143669	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	2823.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.46	5.53	2.28	0.8	5.73	2.82	7.64	10.26	7.28	6.53	2.51	4.39
Merged-chr19-46641634-3	chr19	46641526	46641726	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 1 of 3)	intron (NM_001177813, intron 1 of 3)	18225.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	8.48	14.59	21.11	24.13	13.5	11.6	22.59	26.16	12.98	11.05	13.06	10.65
Merged-chr3-106484151-1	chr3	106484051	106484251	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1701.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	8.48	6.29	10.84	1.21	9.82	7.21	0.66	2.1	12.98	10.04	7.03	5.95
Merged-chr2-21186813-4	chr2	21186676	21186876	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	18589.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	7.27	12.58	7.99	8.04	2.86	5.64	16.28	9.11	14.55	16.57	12.56	8.46
Merged-chr11-77984511-3	chr11	77984413	77984613	+	887.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174852, intron 2 of 14)	intron (NM_174852, intron 2 of 14)	1697.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	11.71	5.28	4.56	5.23	8.18	13.17	9.97	8.94	13.77	14.06	12.56	8.77
Merged-chr18-69571200-3	chr18	69571103	69571303	+	887.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	225043.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	13.73	9.81	2.28	12.47	12.68	11.29	5.31	8.94	20.46	12.55	14.57	5.95
Merged-chr15-25473970-2	chr15	25473933	25474133	+	887.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59841.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	5.25	6.29	4.56	12.87	14.32	4.39	12.95	6.34	4.52	5.02	3.01	2.51
Merged-chr18-77868566-3	chr18	77868478	77868678	+	887.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	ID2|SINE|ID	-69889.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	6.86	9.81	6.28	4.02	4.91	17.56	7.64	5.19	16.92	4.52	8.04	14.1
Merged-chr5-21039525-2	chr5	21039420	21039620	+	887.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	CYRA11_Mm|Unknown|Y-chromosome	-4273.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	9.69	8.8	9.13	6.03	5.73	8.15	10.63	10.57	9.64	12.55	32.16	15.35
Merged-chr14-51091609-3	chr14	51091513	51091713	+	887.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	536.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	14.54	8.8	26.24	5.63	13.91	25.09	10.63	16.82	17.31	20.59	19.6	18.48
Merged-chr10-127739532-5	chr10	127739438	127739638	+	887.3857419999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198035)	promoter-TSS (NM_198035)	0.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	14.13	12.32	7.42	6.44	15.96	13.17	10.96	6.31	15.14	15.06	29.14	8.46
Merged-chr18-82422242-3	chr18	82422153	82422353	+	887.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15476.0	NM_008082	14427.0	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	10.09	10.06	19.97	18.5	5.73	13.8	6.31	14.58	18.69	11.05	28.64	12.84
Merged-chr5-105730716-1	chr5	105730616	105730816	+	887.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	MIRb|SINE|MIR	29906.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.62	6.04	0.57	3.22	10.23	10.98	8.3	10.26	3.93	3.51	10.05	6.89
Merged-chr5-146824744-3	chr5	146824644	146824844	+	887.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8146.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	21.4	11.82	9.13	8.04	18.0	15.68	13.29	12.56	25.96	23.6	25.63	9.4
Merged-chr18-34507429-3	chr18	34507321	34507521	+	887.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-598.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	9.29	8.8	13.12	18.1	20.86	16.93	17.27	18.76	10.23	7.03	11.56	9.71
Merged-chr3-52458878-3	chr3	52458763	52458963	+	887.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58101.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	6.06	10.31	18.25	15.69	23.73	3.76	9.3	16.54	11.8	9.54	12.56	18.48
Merged-chr6-108426435-1	chr6	108426335	108426535	+	887.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-63308.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.65	3.77	2.28	0.8	2.45	1.25	13.62	10.01	3.74	3.51	4.02	4.39
Merged-chr8-124922199-3	chr8	124922137	124922337	+	887.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	24351.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	16.15	9.06	20.54	13.27	17.59	12.23	8.3	10.6	17.7	10.54	13.06	5.33
Merged-chr13-106945715-3	chr13	106945638	106945838	+	887.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1391.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	14.94	10.31	18.25	13.27	13.91	16.62	10.3	25.15	11.6	8.54	14.57	4.7
Merged-chr17-56668976-3	chr17	56668922	56669122	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4203.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	14.94	14.59	14.83	8.04	10.23	11.29	2.99	8.89	12.19	17.07	11.56	12.22
Merged-chr10-84147540-3	chr10	84147443	84147643	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46846.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	18.17	6.79	25.67	14.08	15.55	12.23	4.98	17.97	12.98	25.61	19.6	14.41
Merged-chr9-71165292-3	chr9	71165190	71165390	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2001.0	NM_022026	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	10.9	7.55	12.55	6.44	12.68	20.7	12.29	18.5	20.26	12.05	37.18	19.74
Merged-chr4-84862142-3	chr4	84862041	84862241	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22168.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	7.27	11.57	9.13	7.24	18.82	15.68	11.63	17.55	27.34	18.58	39.19	13.16
Merged-chr17-74570785-3	chr17	74570690	74570890	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 7 of 72)	intron (NM_007566, intron 7 of 72)	42495.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	10.09	8.3	11.98	18.9	27.82	18.19	20.93	36.2	22.03	25.61	39.19	20.99
Merged-chr19-44407925-3	chr19	44407836	44408036	+	887.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-227.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	10.9	13.58	21.68	8.85	17.59	21.64	17.27	19.43	15.34	12.05	24.62	10.96
Merged-chr19-6518771-3	chr19	6518667	6518867	+	887.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 21 of 22)	intron (NM_001205234, intron 21 of 22)	24303.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	19.38	12.32	15.4	14.88	11.05	10.35	7.97	10.07	21.64	19.08	23.62	26.0
Merged-chr2-33908570-1	chr2	33908470	33908670	+	887.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20624.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	1.62	5.03	3.42	1.21	11.86	7.53	16.28	17.13	4.52	5.52	8.54	5.95
Merged-chr13-97559080-3	chr13	97558974	97559174	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-926.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	12.52	15.09	17.68	11.26	17.59	27.28	6.31	18.34	22.82	16.57	10.05	10.96
Merged-chr10-87805943-3	chr10	87805843	87806043	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52322.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.86	15.85	12.55	4.02	24.55	54.88	17.94	13.88	36.58	44.19	23.11	14.41
Merged-chr17-21650082-3	chr17	21649917	21650117	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-594.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	8.08	9.06	10.27	4.83	9.82	10.66	5.98	11.64	12.78	13.56	14.57	5.64
Merged-chrX-75382393-3	chrX	75382298	75382498	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026126)	promoter-TSS (NM_026126)	-1.0	NM_026126	67391.0	Mm.126404	NM_026126	ENSMUSG00000031198	Fundc2	4833415N24Rik|DC44|HCBP6	FUN14 domain containing 2	protein-coding	10.9	10.06	9.7	5.63	22.09	10.66	9.97	14.97	19.28	21.59	31.66	10.34
Merged-chr17-13008894-2	chr17	13008801	13009001	+	887.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	1062.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	3.63	6.04	3.99	1.61	12.27	15.99	9.3	5.41	11.01	14.06	10.55	8.46
Merged-chr17-70738415-3	chr17	70738322	70738522	+	887.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108355.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	21.4	16.35	9.13	9.25	14.32	19.13	13.95	14.22	13.96	12.55	17.08	17.86
Merged-chr1-64446198-2	chr1	64446109	64446309	+	887.1749880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86595.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.25	9.81	5.13	4.83	10.64	4.39	7.31	7.07	10.42	21.09	18.59	11.9
Merged-chr3-127568971-1	chr3	127568871	127569071	+	887.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197997, intron 7 of 25)	MTC|LTR|ERVL-MaLR	15482.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	2.83	1.76	1.14	2.41	2.45	0.63	0.0	0.76	17.11	12.05	16.08	13.47
Merged-chr17-35837047-3	chr17	35836879	35837079	+	887.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	1322.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	7.67	5.79	13.69	7.64	10.64	3.76	12.95	7.85	12.59	12.55	13.57	10.65
Merged-chr13-101697007-3	chr13	101696899	101697099	+	887.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-4369.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	12.92	16.85	11.98	8.45	15.96	24.15	17.27	16.01	23.8	15.57	15.58	11.9
Merged-chr4-120523302-2	chr4	120523193	120523393	+	887.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355424, intron 12 of 14)	intron (NM_001355424, intron 12 of 14)	-8938.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	15.34	9.56	21.68	17.29	10.23	4.39	3.32	3.25	14.16	12.05	17.59	8.14
Merged-chr1-36277455-3	chr1	36277357	36277557	+	887.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4032.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	18.57	14.59	10.84	22.93	16.77	21.01	1.33	13.71	19.67	20.08	13.57	12.22
Merged-chr12-3868749-3	chr12	3868643	3868843	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6499.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	11.31	7.04	13.69	12.87	18.41	17.25	13.62	19.46	13.37	14.56	13.57	15.04
Merged-chr6-125084579-3	chr6	125084500	125084700	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11381.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	15.34	8.8	13.12	11.66	19.64	12.54	10.63	22.09	17.31	10.04	28.14	7.21
Merged-chr14-118591702-3	chr14	118591596	118591796	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105815)	TTS (NR_105815)	776.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	7.27	7.55	5.13	4.83	9.41	12.54	6.98	12.08	23.21	20.08	30.15	14.1
Merged-chr11-76612819-3	chr11	76612763	76612963	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35124.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.06	8.05	14.83	6.84	14.73	10.98	5.98	17.24	8.46	9.54	11.05	6.27
Merged-chr10-20893569-2	chr10	20893485	20893685	+	887.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58962.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.83	0.5	2.28	3.22	11.05	8.78	7.97	11.36	17.31	14.06	43.72	17.23
Merged-chr12-9002261-3	chr12	9002150	9002350	+	887.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172470, intron 12 of 27)	intron (NM_172470, intron 12 of 27)	-27747.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	17.36	21.13	9.13	18.5	17.59	30.1	11.63	19.12	26.16	12.55	23.62	10.34
Merged-chr6-121272692-3	chr6	121272593	121272793	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26787.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	16.15	10.06	11.41	18.5	22.09	15.68	9.63	17.78	12.59	14.06	28.14	14.1
Merged-chr2-104710921-3	chr2	104710827	104711027	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 1 of 9)	L2c|LINE|L2	1235.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	12.92	9.56	9.13	8.04	20.05	37.0	11.29	17.27	33.04	33.14	19.09	15.35
Merged-chr15-91673166-3	chr15	91673077	91673277	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-47.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	7.27	5.28	0.57	10.46	15.96	22.26	12.29	17.47	14.95	27.62	29.65	7.83
Merged-chr13-80881922-3	chr13	80881809	80882009	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1475.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	11.31	14.84	5.7	18.1	7.77	19.44	8.97	16.18	24.0	23.1	24.12	12.53
Merged-chr10-57632062-3	chr10	57631985	57632185	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008863, exon 1 of 6)	5' UTR (NM_008863, exon 1 of 6)	104.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	12.11	16.85	23.96	11.66	18.41	15.99	12.62	20.86	13.96	9.54	24.62	9.71
Merged-chr6-37213099-3	chr6	37212995	37213195	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	86881.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	10.9	7.8	12.55	30.16	27.0	13.8	21.26	45.93	31.67	15.06	27.64	27.57
Merged-chr5-146798233-3	chr5	146798133	146798333	+	887.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3277.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	10.09	7.8	28.52	17.29	18.0	9.09	32.55	41.22	23.21	22.09	35.68	16.6
Merged-chr1-74362070-3	chr1	74361987	74362187	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033345)	promoter-TSS (NM_001033345)	-21.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	9.29	9.31	13.69	7.64	14.32	21.32	7.31	14.61	24.39	36.15	34.67	16.92
Merged-chr15-66297641-1	chr15	66297541	66297741	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11417.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	3.23	4.78	6.85	1.61	9.0	1.88	4.32	9.08	3.54	6.03	8.04	7.21
Merged-chr8-14815258-2	chr8	14815146	14815346	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-73290.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.63	1.76	8.56	8.04	3.68	3.76	10.96	18.08	11.41	6.03	16.58	11.59
Merged-chr14-31388527-1	chr14	31388427	31388627	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	B4|SINE|B4	29150.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.25	5.79	4.56	4.83	9.41	10.98	6.64	9.06	5.9	6.53	5.02	5.95
Merged-chr4-135898560-3	chr4	135898453	135898653	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009924, intron 1 of 1)	MIRb|SINE|MIR	3364.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	5.65	8.8	18.83	5.23	33.96	40.45	17.61	24.42	23.01	23.6	19.09	13.16
Merged-chr7-142386830-3	chr7	142386759	142386959	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1011.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.27	8.3	15.4	6.84	2.86	2.2	13.29	7.29	8.46	9.04	10.55	12.84
Merged-chr11-109298188-2	chr11	109298055	109298255	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011268)	promoter-TSS (NM_011268)	26.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	14.13	6.04	7.42	6.84	9.82	13.17	6.98	22.85	18.69	12.05	22.11	6.58
Merged-chr15-93595922-1	chr15	93595822	93596022	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033217)	promoter-TSS (NM_001033217)	-31.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	2.83	5.03	6.85	5.23	14.32	10.98	8.3	16.77	3.34	4.52	8.54	4.07
Merged-chr17-83513864-2	chr17	83513768	83513968	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	465.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	13.73	9.31	13.12	14.88	14.73	10.66	5.31	13.68	11.41	18.58	25.12	13.16
Merged-chr2-11548259-1	chr2	11548159	11548359	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	ID4|SINE|ID	5670.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	1.21	2.52	5.13	8.04	2.45	1.25	5.65	6.84	2.75	4.52	2.51	4.39
Merged-chr13-9255200-1	chr13	9255100	9255300	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-21325.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.04	4.02	9.13	1.61	6.55	0.63	2.99	6.9	4.72	5.52	2.51	4.39
Merged-chr15-77096478-1	chr15	77096378	77096578	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_108037)	TTS (NR_108037)	12080.0	NR_108037	74303.0	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	4.85	5.28	5.7	2.82	4.5	10.98	2.33	7.49	1.57	0.0	0.0	0.0
Merged-chrX-121469551-1	chrX	121469451	121469651	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	927834.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	2.83	2.01	3.42	0.4	4.91	7.84	9.97	8.94	1.97	0.0	5.53	2.51
Merged-chr1-106389871-2	chr1	106389767	106389967	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133821, exon 16 of 17)	exon (NM_133821, exon 16 of 17)	156764.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	7.67	5.28	9.13	6.44	8.59	6.27	18.27	19.68	13.77	3.51	21.1	5.01
Merged-chrX-167151631-1	chrX	167151531	167151731	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57587.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	3.63	2.01	5.7	4.42	1.64	0.63	7.97	8.52	3.74	1.51	4.52	3.45
Merged-chr13-91599780-1	chr13	91599680	91599880	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	MTC|LTR|ERVL-MaLR	138683.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	4.85	4.02	15.4	7.24	9.41	5.64	12.95	15.0	5.51	4.52	14.57	3.45
Merged-chr2-144274956-1	chr2	144274856	144275056	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355688, intron 2 of 4)	intron (NM_001355688, intron 2 of 4)	4052.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	7.67	2.01	6.28	1.21	1.64	4.08	5.65	8.64	4.13	2.51	3.01	3.13
Merged-chr14-53082088-1	chr14	53081988	53082188	+	887.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42622.0	NR_155501	102632039.0	Mm.410779	NR_155501		Gm30214	-	predicted gene, 30214	ncRNA	0.0	0.5	2.28	0.0	0.0	0.63	0.0	0.06	14.95	4.52	19.09	1.88
Merged-chr16-76283644-4	chr16	76283627	76283827	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89322.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.25	3.52	19.4	8.85	2.05	10.03	2.33	2.92	6.29	6.03	12.06	7.21
Merged-chr15-27688284-3	chr15	27688175	27688375	+	886.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6733.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.46	3.77	7.99	13.27	10.23	5.02	7.64	16.12	8.85	16.07	16.58	12.84
Merged-chr4-116464795-3	chr4	116464670	116464870	+	886.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-589.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	8.48	11.07	5.13	9.65	16.36	21.32	8.3	11.86	14.55	16.07	14.07	7.21
Merged-chr1-34826095-3	chr1	34826000	34826200	+	886.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	16950.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	7.27	12.83	17.68	13.27	20.05	22.89	7.97	20.38	17.11	12.05	20.1	13.78
Merged-chr1-165193516-2	chr1	165193411	165193611	+	886.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	922.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	15.75	8.8	6.28	6.84	6.55	11.92	15.28	12.42	16.33	9.54	18.59	17.54
Merged-chr3-135420726-3	chr3	135420619	135420819	+	886.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	2714.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	12.11	13.58	20.54	12.87	10.23	10.03	12.95	18.06	33.63	22.59	25.63	18.48
Merged-chr4-122898511-3	chr4	122898412	122898612	+	886.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12436.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	11.31	12.07	10.84	5.63	18.41	16.93	4.65	6.59	19.67	22.09	18.09	11.9
Merged-chr13-23712175-3	chr13	23712074	23712274	+	886.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-1320.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	14.13	10.06	24.53	20.51	12.27	12.23	9.97	19.35	25.96	12.55	27.64	6.89
Merged-chr19-28964171-5	chr19	28964087	28964287	+	886.88092	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198651)	promoter-TSS (NM_198651)	-33.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	5.25	10.06	14.83	10.05	4.5	11.29	11.96	10.37	8.65	5.52	8.54	10.34
Merged-chr2-35979376-4	chr2	35979292	35979492	+	886.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029774, exon 1 of 10)	exon (NM_029774, exon 1 of 10)	232.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	13.73	24.15	9.7	11.26	13.91	13.8	13.62	11.94	15.14	11.05	14.07	14.72
Merged-chr11-94133491-3	chr11	94133399	94133599	+	886.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77955.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	11.31	14.59	9.7	12.87	27.82	25.4	9.97	19.15	20.06	19.08	13.06	9.4
Merged-chr12-35418126-3	chr12	35418012	35418212	+	886.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116877.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	11.31	7.29	14.83	18.1	11.86	19.13	9.97	18.7	40.52	39.67	50.75	21.3
Merged-chr11-62185088-2	chr11	62184972	62185172	+	886.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029936, intron 10 of 12)	intron (NM_001029936, intron 10 of 12)	-63912.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	5.65	7.55	9.7	3.22	6.55	11.6	10.96	12.48	4.13	3.51	2.01	1.25
Merged-chr5-76905017-2	chr5	76904933	76905133	+	886.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173765, intron 1 of 15)	RSINE1|SINE|B4	481.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	5.65	5.79	5.7	8.04	11.05	8.47	4.32	10.21	14.36	11.55	5.02	5.01
Merged-chr11-86356322-2	chr11	86356235	86356435	+	886.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	1190.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	7.27	4.78	7.99	6.03	16.77	22.58	9.63	7.12	14.75	23.1	14.57	13.78
Merged-chr4-139238791-1	chr4	139238691	139238891	+	886.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	44680.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.25	2.77	3.42	2.01	19.64	11.6	7.97	22.6	4.13	5.52	6.53	1.88
Merged-chr19-21052096-1	chr19	21051996	21052196	+	886.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52614.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.02	2.26	1.71	0.0	10.23	7.84	11.96	8.92	6.88	8.54	6.03	2.51
Merged-chrX-103186618-3	chrX	103186537	103186737	+	886.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008671)	promoter-TSS (NM_008671)	27.0	NM_008671	17954.0	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	11.31	3.27	18.25	22.12	6.55	11.6	16.28	14.64	20.26	5.02	37.18	13.16
Merged-chr5-134572973-3	chr5	134572815	134573015	+	886.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106087)	TTS (NR_106087)	839.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	16.15	12.32	13.12	8.85	8.59	8.47	8.3	17.02	12.78	8.54	5.53	6.89
Merged-chr16-62940769-3	chr16	62940662	62940862	+	886.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86455.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	9.29	10.56	3.42	9.25	6.95	13.8	12.29	19.54	17.7	8.03	16.08	10.96
Merged-chr12-40564437-3	chr12	40564323	40564523	+	886.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118370.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	13.33	14.09	4.56	8.45	13.09	10.66	12.62	13.46	22.23	17.57	22.11	12.22
Merged-chr18-20743026-3	chr18	20742939	20743139	+	886.7777710000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.4	1.76	2.28	4.83	1.64	3.45	2.99	6.93	6.49	8.03	10.55	3.76
Merged-chr18-3983149-2	chr18	3983053	3983253	+	886.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182679.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	13.33	2.77	5.7	6.03	6.14	11.29	6.64	25.85	30.49	27.11	19.09	7.21
Merged-chr12-11276724-5	chr12	11276609	11276809	+	886.757141	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361252, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	10823.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	5.65	3.27	11.41	6.84	9.41	8.15	5.65	9.87	14.55	12.05	9.55	11.28
Merged-chr18-60811448-4	chr18	60811358	60811558	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039567)	promoter-TSS (NR_039567)	-618.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	8.48	15.59	6.85	2.01	3.27	5.96	2.66	0.0	14.75	14.56	10.55	10.02
Merged-chr15-97727371-2	chr15	97727279	97727479	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168693, intron 1 of 9)	intron (NM_001168693, intron 1 of 9)	4026.0	NM_001168693	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	9.69	18.86	33.09	17.7	11.05	4.08	14.62	15.08	7.28	0.0	2.51	4.7
Merged-chr1-111864242-2	chr1	111864157	111864357	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081316, exon 1 of 2)	5' UTR (NM_001081316, exon 1 of 2)	661.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	7.27	18.11	14.83	24.13	11.05	11.92	10.96	16.82	13.57	17.07	14.07	13.47
Merged-chr13-115900924-2	chr13	115900829	115901029	+	886.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	408759.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	4.04	5.79	5.7	0.8	14.32	18.5	13.95	18.22	21.24	7.03	10.55	8.77
Merged-chr4-12427697-2	chr4	12427626	12427826	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-255711.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.25	6.04	12.55	15.69	5.73	5.96	7.97	8.33	9.05	6.03	4.52	4.07
Merged-chr12-102296126-1	chr12	102296026	102296226	+	886.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12485.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.63	6.54	2.85	3.22	6.95	26.03	13.29	9.48	8.65	10.54	7.54	4.07
Merged-chr4-40876946-3	chr4	40876907	40877107	+	886.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22470.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	6.86	6.54	11.41	11.26	5.73	15.68	7.97	14.55	13.96	11.55	12.56	6.89
Merged-chr17-5806235-2	chr17	5806145	5806345	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6755.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.06	5.79	7.99	9.25	3.68	10.03	11.63	27.06	11.8	4.52	14.57	16.92
Merged-chr16-92783818-1	chr16	92783718	92783918	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	42256.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.65	4.53	3.99	4.02	6.55	8.78	9.3	17.1	1.77	0.0	1.0	2.82
Merged-chr2-16131754-3	chr2	16131641	16131841	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 33 of 38)	L2|LINE|L2	-224563.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	8.08	8.3	5.7	4.42	6.55	1.25	4.98	14.24	20.26	5.02	19.09	16.29
Merged-chr16-62813994-1	chr16	62813894	62814094	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	-682.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	1.62	5.53	5.7	6.44	9.0	8.47	8.3	11.16	5.11	5.52	14.07	3.13
Merged-chr4-85695387-1	chr4	85695287	85695487	+	886.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-358528.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.81	2.01	4.56	0.8	0.0	1.25	3.32	3.95	20.46	14.56	21.1	15.35
Merged-chr2-38545246-3	chr2	38545139	38545339	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	MIRc|SINE|MIR	33363.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	12.52	10.06	19.97	20.91	16.36	10.98	19.93	24.36	17.11	8.03	7.54	7.83
Merged-chr3-144698581-1	chr3	144698481	144698681	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21754.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.65	8.05	2.28	7.24	12.68	8.78	7.64	11.02	12.0	7.03	13.57	10.02
Merged-chr4-137837987-3	chr4	137837868	137838068	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	18.17	24.4	23.96	43.84	60.55	24.46	39.86	43.49	6.1	6.53	11.56	12.53
Merged-chr6-94284790-1	chr6	94284690	94284890	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	-873.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	7.27	4.28	1.71	4.83	6.14	8.78	7.97	15.48	0.0	3.01	0.0	0.94
Merged-chr1-153553717-3	chr1	153553622	153553822	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4008.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	15.75	18.11	15.97	20.11	17.18	19.44	9.63	3.39	20.26	21.59	19.09	11.9
Merged-chr13-52619693-3	chr13	52619638	52619838	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	22856.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.86	8.3	11.98	3.62	14.73	18.19	11.63	20.83	20.26	16.57	35.17	9.08
Merged-chr14-58271534-2	chr14	58271428	58271628	+	886.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	198842.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.85	3.77	11.41	11.26	9.82	3.76	17.27	25.93	14.36	3.51	28.64	9.08
Merged-chr5-92349673-4	chr5	92349594	92349794	+	886.6458130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-805.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	18.98	11.32	7.99	5.23	16.36	19.76	3.32	4.4	19.28	30.13	8.54	15.66
Merged-chr11-100761849-3	chr11	100761721	100761921	+	886.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010410, exon 2 of 2)	exon (NM_010410, exon 2 of 2)	1110.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	11.71	19.12	17.68	10.05	7.36	8.78	3.32	5.94	18.69	22.09	14.07	17.54
Merged-chr13-97607344-3	chr13	97607234	97607434	+	886.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47334.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	8.48	8.55	11.41	11.66	14.73	13.17	13.62	19.12	26.95	25.11	31.15	12.84
Merged-chr9-96725956-2	chr9	96725848	96726048	+	886.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	5727.0	NM_175537	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	7.67	9.81	13.12	6.84	17.18	9.41	14.95	12.25	5.31	4.52	5.02	6.89
Merged-chr8-13624169-3	chr8	13624073	13624273	+	886.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53414.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	10.5	14.09	18.83	14.08	30.68	21.01	28.23	34.4	25.18	19.08	12.56	12.84
Merged-chr13-21714918-3	chr13	21714818	21715018	+	886.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178199)	TTS (NM_178199)	1225.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	10.5	9.06	9.13	14.08	6.14	11.6	4.32	13.65	18.1	36.15	18.59	14.72
Merged-chr15-31542116-3	chr15	31542003	31542203	+	886.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11066.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	5.65	4.78	11.98	9.25	11.45	8.47	6.64	11.21	16.52	9.04	17.59	4.39
Merged-chr13-59889939-2	chr13	59889836	59890036	+	886.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66789.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	16.96	8.05	13.69	12.87	1.64	3.14	1.66	3.7	13.18	16.57	18.09	7.52
Merged-chr19-57591013-3	chr19	57590904	57591104	+	886.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20030.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	35.53	26.16	10.84	16.89	14.73	24.77	9.97	17.75	10.42	17.57	11.05	6.89
Merged-chr12-82151192-3	chr12	82151090	82151290	+	886.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18826.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	13.33	10.06	11.98	10.05	48.27	39.51	29.56	41.44	40.71	45.69	48.74	26.31
Merged-chr19-45790762-3	chr19	45790662	45790862	+	886.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7209.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	9.69	10.06	13.69	4.42	22.09	24.77	4.98	12.62	25.96	32.13	35.68	15.98
Merged-chr8-116951104-3	chr8	116951016	116951216	+	886.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	7723.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	11.71	11.32	7.99	11.26	9.0	15.37	9.3	19.04	12.0	8.54	18.09	11.59
Merged-chr7-115084899-3	chr7	115084808	115085008	+	886.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	133634.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	8.08	8.8	25.1	10.05	30.68	30.73	29.9	39.56	21.44	10.04	24.12	15.04
Merged-chr8-33673366-2	chr8	33673272	33673472	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 4 of 12)	B2_Mm2|SINE|B2	20134.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.02	1.01	2.85	0.8	7.36	3.45	1.99	5.86	50.16	22.59	31.15	17.54
Merged-chr7-115124915-1	chr7	115124815	115125015	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	173641.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.65	3.27	1.71	4.42	8.59	2.51	9.97	8.07	4.13	4.52	6.03	9.08
Merged-chr8-75151049-3	chr8	75150952	75151152	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41543.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	23.82	8.05	26.81	14.48	7.77	9.72	16.28	18.45	17.51	15.06	40.2	6.58
Merged-chr15-59823395-1	chr15	59823295	59823495	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28436.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.42	1.01	4.56	2.41	5.73	10.98	6.31	14.64	5.51	3.51	3.52	12.22
Merged-chr18-52750061-4	chr18	52749965	52750165	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17746.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	5.65	4.78	11.41	6.03	9.41	13.48	7.64	12.36	12.39	11.55	16.58	6.58
Merged-chr9-61332414-2	chr9	61332296	61332496	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38587.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	9.69	12.07	31.95	8.85	5.73	5.02	2.99	9.08	12.98	4.02	9.04	8.77
Merged-chr19-24271505-1	chr19	24271405	24271605	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	9081.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	8.48	9.06	0.57	6.03	14.73	20.7	10.96	16.54	16.52	16.57	19.09	6.27
Merged-chr12-52304133-3	chr12	52304039	52304239	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 9 of 10)	intron (NM_029760, intron 9 of 10)	176470.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	10.09	14.59	7.99	25.34	13.91	6.59	12.95	15.5	22.82	22.09	23.62	15.35
Merged-chr11-96400928-2	chr11	96400821	96401021	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35163.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	3.23	0.5	4.56	0.8	24.55	42.02	30.89	22.77	11.21	32.64	12.06	12.53
Merged-chr6-121184948-3	chr6	121184840	121185040	+	886.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028730, intron 1 of 4)	intron (NM_028730, intron 1 of 4)	1273.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	10.09	17.1	12.55	10.46	19.23	12.23	11.96	13.91	13.96	34.65	28.64	13.16
Merged-chr14-21707110-3	chr14	21707004	21707204	+	886.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7472.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	13.33	8.55	9.7	23.33	19.23	18.19	10.63	19.01	11.8	11.55	18.59	15.04
Merged-chr2-27766952-7	chr2	27766937	27767137	+	886.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56454.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.27	6.79	17.11	14.48	13.5	11.6	8.64	7.04	21.24	18.08	13.57	13.16
Merged-chr4-9645562-2	chr4	9645473	9645673	+	886.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	MTC|LTR|ERVL-MaLR	-1856.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.48	4.02	6.85	23.33	9.82	10.03	4.98	8.36	24.39	16.07	36.68	23.18
Merged-chr12-17682556-4	chr12	17682494	17682694	+	886.392822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-8215.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	16.96	6.29	14.83	7.24	14.73	28.85	12.95	5.8	12.0	25.11	7.03	3.13
Merged-chr18-80464936-3	chr18	80464827	80465027	+	886.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 1 of 12)	RLTR12B|LTR|ERVK	4740.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	12.92	18.61	9.13	8.04	29.05	31.67	17.27	13.46	30.68	47.7	26.63	14.1
Merged-chr19-45652572-3	chr19	45652470	45652670	+	886.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	7623.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	23.82	9.06	11.41	18.9	25.77	14.74	10.63	25.85	15.93	13.56	20.1	15.35
Merged-chr19-10555802-3	chr19	10555691	10555891	+	886.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	-28.0	NM_001277860	68642.0	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	11.71	15.85	3.99	17.7	12.68	11.29	12.29	10.37	11.21	17.57	19.6	9.4
Merged-chr5-24674426-2	chr5	24674315	24674515	+	886.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	-11400.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	11.31	6.04	5.7	1.61	17.18	19.44	4.32	14.24	22.42	9.04	21.61	8.14
Merged-chr9-70740172-3	chr9	70740074	70740274	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007399, exon 5 of 16)	exon (NM_007399, exon 5 of 16)	61192.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	9.69	4.78	2.28	14.48	19.23	17.87	9.63	21.31	19.28	14.06	21.61	20.36
Merged-chr1-86466073-3	chr1	86465958	86466158	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	39729.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	9.29	7.04	13.12	7.24	27.0	16.62	6.98	21.56	14.75	18.08	33.67	16.29
Merged-chr2-50854041-3	chr2	50853932	50854132	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55652.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	17.36	15.34	25.1	17.29	15.55	6.59	15.94	18.14	12.39	24.1	15.58	6.27
Merged-chr6-113662058-3	chr6	113661959	113662159	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23592.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	15.34	5.79	19.97	9.65	30.68	16.93	17.27	24.5	34.81	16.57	17.08	13.47
Merged-chr3-106474402-3	chr3	106474306	106474506	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-8025.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	19.79	23.9	17.11	6.44	22.09	22.58	12.29	16.65	20.26	16.57	12.56	7.52
Merged-chr17-26753696-3	chr17	26753632	26753832	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-27347.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	8.08	14.09	23.39	22.52	30.27	22.58	9.97	31.12	12.19	11.55	5.53	12.53
Merged-chr3-98057138-3	chr3	98057024	98057224	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	43586.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	8.88	4.53	17.68	1.61	19.23	18.5	17.27	14.3	11.21	10.04	15.07	2.82
Merged-chr2-92192046-3	chr2	92191955	92192155	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035480)	promoter-TSS (NR_035480)	78.0	NR_035480	100316756.0		NR_035480	ENSMUSG00000088639	Mir1955	mir-1955|mmu-mir-1955	microRNA 1955	ncRNA	8.88	10.31	1.14	3.62	5.73	16.93	2.99	8.66	17.51	7.53	22.61	3.45
Merged-chr9-15494135-1	chr9	15494035	15494235	+	886.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359604, intron 1 of 2)	CpG	703.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	4.44	6.29	3.42	5.63	11.45	1.57	7.64	5.33	6.29	2.51	0.5	1.25
Merged-chr13-64040034-1	chr13	64039934	64040134	+	886.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49167.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.0	0.0	0.0	0.8	7.77	3.14	16.28	10.79	2.36	6.03	5.02	3.76
Merged-chr6-148436621-3	chr6	148436518	148436718	+	886.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	7734.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	6.46	9.06	14.83	12.07	11.86	10.98	10.96	18.42	15.54	14.56	18.09	7.52
Merged-chr15-93252638-2	chr15	93252541	93252741	+	886.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	22538.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	17.36	11.82	14.83	16.09	13.5	5.96	5.65	14.92	8.06	2.51	22.61	5.64
Merged-chr1-36121401-3	chr1	36121300	36121500	+	886.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22913.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	23.82	12.83	13.69	16.49	15.14	24.77	19.27	23.3	13.77	11.05	18.09	10.34
Merged-chr18-57657042-3	chr18	57656948	57657148	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	MTD|LTR|ERVL-MaLR	-18463.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	17.36	6.04	14.83	6.84	16.77	4.08	10.3	13.51	23.21	21.09	19.09	14.72
Merged-chr12-17011680-3	chr12	17011569	17011769	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	58.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	11.31	11.32	22.82	19.31	17.18	20.38	14.62	9.62	12.78	7.03	13.06	9.08
Merged-chr18-44812178-3	chr18	44812063	44812263	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085373)	promoter-TSS (NM_001085373)	19.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	16.56	9.56	6.85	9.25	12.27	11.92	15.28	14.75	22.62	7.53	19.6	9.08
Merged-chr6-30546946-3	chr6	30546849	30547049	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024698, intron 4 of 10)	intron (NM_001024698, intron 4 of 10)	5307.0	NM_001024698	232680.0	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	12.92	12.07	6.85	9.65	14.32	20.7	10.96	11.5	17.11	20.08	16.08	9.4
Merged-chr2-124616937-3	chr2	124616839	124617039	+	886.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	6643.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	14.13	6.79	18.83	24.13	11.05	7.53	18.27	20.22	24.19	11.55	25.12	20.68
Merged-chr18-62178925-5	chr18	62178829	62179029	+	886.26001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007420, exon 1 of 1)	exon (NM_007420, exon 1 of 1)	1052.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.25	10.82	4.56	6.03	11.45	8.78	4.65	10.12	8.85	13.05	8.54	9.08
Merged-chr13-113493180-2	chr13	113493077	113493277	+	886.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	9667.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	1.62	0.5	0.0	1.21	11.86	13.8	7.97	9.45	12.59	8.03	17.08	5.01
Merged-chr1-74379141-3	chr1	74379058	74379258	+	886.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	3955.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	17.36	13.08	23.39	5.23	13.5	11.6	11.96	6.98	23.21	21.09	11.05	15.98
Merged-chr7-141395008-3	chr7	141394928	141395128	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	2868.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	14.54	9.56	11.41	11.66	12.68	19.76	9.3	12.45	24.98	24.6	16.08	17.86
Merged-chr2-174343696-3	chr2	174343558	174343758	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	13569.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	13.73	7.55	7.99	8.45	18.41	11.29	6.98	17.94	20.26	19.08	24.62	13.16
Merged-chr6-86504379-3	chr6	86504306	86504506	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16179.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	3.63	11.32	1.71	6.84	4.91	8.15	2.66	9.34	15.93	15.06	20.6	5.64
Merged-chr10-81185107-3	chr10	81185009	81185209	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	1191.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	6.46	12.32	25.1	7.24	7.36	15.99	7.97	5.33	14.55	14.56	8.04	0.94
Merged-chr4-41346610-3	chr4	41346486	41346686	+	886.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-2410.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	9.69	10.82	6.85	14.88	17.18	8.15	7.31	9.36	15.54	15.57	8.54	12.22
Merged-chr15-68167997-3	chr15	68167900	68168100	+	886.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152182, intron 8 of 13)	intron (NR_152182, intron 8 of 13)	90856.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	12.52	6.54	14.83	10.86	20.86	14.74	23.58	36.93	11.01	14.06	23.11	12.84
Merged-chr11-106677977-1	chr11	106677877	106678077	+	886.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	37304.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.44	3.27	11.98	4.02	6.55	9.41	7.64	9.56	4.13	6.53	5.53	5.01
Merged-chr18-21725478-2	chr18	21725370	21725570	+	886.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73102.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	8.48	11.82	19.97	18.1	20.05	19.44	20.93	23.64	0.2	0.0	0.0	0.0
Merged-chr7-141092521-3	chr7	141092431	141092631	+	886.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355055, intron 6 of 9)	CpG	8015.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	10.9	13.58	18.25	8.85	21.27	19.44	9.63	21.81	21.83	20.59	43.72	8.77
Merged-chr1-162000041-3	chr1	161999961	162000161	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-4908.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	6.06	13.33	9.13	11.26	25.36	21.95	13.29	16.54	16.72	18.08	16.58	11.9
Merged-chr10-62324052-3	chr10	62323925	62324125	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	Lx5b|LINE|L1	16396.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	14.94	6.29	13.69	6.03	6.14	19.44	10.96	14.16	19.08	15.06	27.13	15.98
Merged-chr4-123618207-3	chr4	123618103	123618303	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	1783.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	4.04	8.8	20.54	14.08	14.73	16.93	15.61	21.42	14.55	21.09	22.11	14.72
Merged-chr5-16541925-3	chr5	16541820	16542020	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11575.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	8.48	6.54	16.54	10.05	19.23	41.71	41.85	42.93	23.21	31.13	27.64	12.53
Merged-chr1-120430333-2	chr1	120430229	120430429	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	74695.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	15.34	10.56	6.85	13.27	0.0	0.63	0.66	1.01	21.05	16.57	25.12	11.59
Merged-chr13-26317209-2	chr13	26317106	26317306	+	886.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-4800.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	1.21	7.29	2.28	2.41	2.86	13.17	7.64	7.88	18.69	23.1	18.59	7.83
Merged-chr1-93072648-3	chr1	93072564	93072764	+	886.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 8 of 46)	intron (NM_001294150, intron 8 of 46)	9816.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	12.92	11.07	12.55	7.64	10.64	15.05	7.31	6.53	17.31	15.06	25.63	8.77
Merged-chr6-87547588-2	chr6	87547492	87547692	+	886.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14333.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.85	0.75	4.56	6.44	13.91	13.8	4.32	9.84	12.78	7.03	16.58	9.08
Merged-chr7-80370785-3	chr7	80370736	80370936	+	886.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172903, exon 2 of 24)	5' UTR (NM_172903, exon 2 of 24)	539.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	16.15	8.05	3.99	10.86	15.55	6.9	10.63	9.11	11.8	13.05	16.08	12.22
Merged-chr1-60961233-3	chr1	60961129	60961329	+	886.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16685.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	10.5	8.05	13.69	10.05	22.5	17.56	10.96	11.27	17.51	13.56	18.09	6.89
Merged-chr18-8677654-3	chr18	8677559	8677759	+	886.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-535197.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	12.92	8.3	13.69	12.47	8.18	11.6	6.64	11.44	30.09	27.62	39.7	13.16
Merged-chr2-27744853-3	chr2	27744757	27744957	+	886.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34274.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.85	3.02	2.28	14.08	4.91	4.7	8.64	6.42	4.92	7.53	4.52	2.82
Merged-chr13-5871531-3	chr13	5871421	5871621	+	886.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10032.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	15.75	16.35	14.83	7.24	27.0	25.09	18.93	21.67	12.59	27.11	15.58	5.95
Merged-chr17-48101067-3	chr17	48101002	48101202	+	886.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10724.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	9.69	9.06	10.27	8.45	13.09	13.17	8.64	9.7	24.39	11.55	24.12	11.9
Merged-chr19-4269207-2	chr19	4269091	4269291	+	886.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356620)	promoter-TSS (NM_001356620)	42.0	NM_001356620	245857.0	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	SSH-3|SSH-3L	slingshot protein phosphatase 3	protein-coding	16.96	12.83	10.84	6.44	22.5	12.23	9.63	13.54	5.31	10.04	6.53	2.19
Merged-chr1-152813813-3	chr1	152813680	152813880	+	886.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 3 of 15)	RLTR28|LTR|ERVL	13627.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	14.94	10.06	9.13	15.69	14.32	11.29	14.62	6.7	19.08	20.59	13.57	8.46
Merged-chr17-70989676-3	chr17	70989575	70989775	+	886.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	841.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	10.9	7.55	8.56	13.67	13.91	8.78	10.96	12.87	24.19	27.11	20.1	7.52
Merged-chr14-79482417-3	chr14	79482324	79482524	+	886.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-1156.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	19.38	8.55	10.27	6.84	16.36	16.31	9.63	19.85	17.31	7.53	13.06	15.98
Merged-chr11-76646177-3	chr11	76646067	76646267	+	886.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26303.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	21.0	7.04	10.27	18.5	22.5	26.03	8.3	20.36	42.09	20.59	20.6	14.72
Merged-chr4-129795542-3	chr4	129795425	129795625	+	886.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24954.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	14.94	13.33	19.97	12.47	10.64	5.64	8.64	11.83	13.77	13.05	8.54	8.77
Merged-chr9-45396099-1	chr9	45395999	45396199	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_022004)	TTS (NM_022004)	-3610.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	6.46	3.02	5.7	6.03	9.0	11.92	12.95	17.05	8.06	3.51	5.53	6.27
Merged-chr14-70062550-1	chr14	70062450	70062650	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14895.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.86	10.82	19.4	12.87	16.36	14.74	11.63	10.91	18.49	14.56	15.07	14.41
Merged-chr4-141871563-2	chr4	141871444	141871644	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3376.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	12.52	16.1	21.11	11.66	17.18	12.54	3.65	5.61	37.57	34.65	54.27	23.18
Merged-chr10-12940772-1	chr10	12940672	12940872	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029075, exon 3 of 3)	3' UTR (NM_029075, exon 3 of 3)	-17645.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	6.86	3.52	6.85	6.44	3.27	4.39	11.29	6.25	0.59	1.51	0.0	2.19
Merged-chr8-111570666-2	chr8	111570547	111570747	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	L1MEd|LINE|L1	32304.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	10.9	9.31	9.13	2.41	12.68	15.99	3.99	1.96	10.42	17.07	7.03	3.45
Merged-chr14-47393583-1	chr14	47393483	47393683	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144553, intron 15 of 18)	intron (NM_144553, intron 15 of 18)	19723.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.42	4.28	11.41	2.41	2.86	6.27	7.64	8.36	3.54	3.51	3.01	3.76
Merged-chr4-145230833-1	chr4	145230733	145230933	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16037.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.67	2.52	6.85	2.41	4.5	7.53	0.66	10.63	4.33	2.51	11.05	4.39
Merged-chr3-84512989-1	chr3	84512889	84513089	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293801, intron 6 of 7)	intron (NM_001293801, intron 6 of 7)	-32550.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	4.04	3.52	2.28	7.24	4.91	5.64	8.3	9.17	6.29	2.01	7.03	5.33
Merged-chr10-94487340-2	chr10	94487238	94487438	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MIR|SINE|MIR	-27519.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.08	8.3	13.69	4.83	21.68	10.66	10.96	21.2	8.26	14.56	16.08	11.59
Merged-chr18-38993618-1	chr18	38993518	38993718	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175164, exon 1 of 23)	exon (NM_175164, exon 1 of 23)	473.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.48	5.53	9.7	6.84	4.5	11.6	9.97	11.52	7.28	7.03	7.03	9.08
Merged-chr19-36766379-1	chr19	36766279	36766479	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-29775.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	0.0	0.5	0.0	0.0	0.82	0.94	0.66	0.0	17.51	4.52	13.06	5.64
Merged-chr12-102506209-1	chr12	102506109	102506309	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36299.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	6.86	3.52	0.0	8.04	13.91	1.57	4.65	8.8	0.0	0.0	0.0	2.19
Merged-chr11-31891216-1	chr11	31891116	31891316	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	20276.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	8.08	3.02	9.13	6.44	3.68	10.98	5.98	9.53	3.74	14.06	8.04	3.76
Merged-chr6-136988673-1	chr6	136988573	136988773	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34150.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	0.0	0.5	1.14	0.0	3.27	2.51	2.66	2.38	14.16	11.05	25.12	2.51
Merged-chrX-10904258-1	chrX	10904158	10904358	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186893.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	1.62	2.01	0.0	4.42	9.82	8.47	0.66	8.47	5.31	4.52	11.05	5.64
Merged-chr16-65201491-3	chr16	65201410	65201610	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95726.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	7.67	9.06	11.41	14.48	51.14	43.59	39.2	47.47	25.57	25.61	31.66	8.77
Merged-chr11-119355966-1	chr11	119355866	119356066	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	409.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	2.83	6.29	8.56	3.22	4.5	5.33	1.66	6.45	8.46	3.01	14.07	10.02
Merged-chr8-33664667-1	chr8	33664567	33664767	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	RLTR6_Mm|LTR|ERV1	11429.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.31	13.56	19.6	8.77
Merged-chr10-75781417-3	chr10	75781319	75781519	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133994)	promoter-TSS (NM_133994)	3.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	12.52	3.77	23.39	22.93	9.41	8.78	11.63	29.3	13.77	8.54	27.64	6.27
Merged-chr5-25314134-1	chr5	25314034	25314234	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081383, exon 36 of 59)	exon (NM_001081383, exon 36 of 59)	67761.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	2.83	0.25	1.71	9.65	5.32	1.88	6.31	9.7	3.15	4.02	9.04	4.07
Merged-chr6-117584683-3	chr6	117584584	117584784	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	89449.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	4.04	11.57	19.97	9.25	16.36	13.17	11.29	12.06	20.06	15.06	16.58	13.47
Merged-chr2-27354956-3	chr2	27354794	27354994	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	72714.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	8.88	8.05	6.28	14.08	6.14	10.66	5.31	9.0	6.49	12.05	15.07	9.71
Merged-chr18-65512537-3	chr18	65512513	65512713	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	(TG)n|Simple_repeat|Simple_repeat	-67617.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.46	11.32	5.7	11.66	13.5	5.02	12.62	7.79	9.64	10.04	8.04	10.34
Merged-chr1-84149237-1	chr1	84149137	84149337	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	69724.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	6.86	3.52	1.14	8.45	11.45	5.33	8.3	10.91	6.69	7.03	8.54	6.27
Merged-chr6-108168146-1	chr6	108168046	108168246	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	17437.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	5.25	3.77	5.7	9.25	4.5	1.88	2.33	7.74	10.42	8.03	22.11	11.59
Merged-chr7-41651738-3	chr7	41651624	41651824	+	885.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360680)	TTS (NM_001360680)	-16290.0	NR_004441	75835.0	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	13.33	15.85	17.11	18.5	14.73	27.59	15.61	12.93	10.42	11.05	8.54	7.83
Merged-chr13-58512188-3	chr13	58512085	58512285	+	885.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	98692.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	12.52	17.86	10.27	26.14	9.82	16.31	9.63	16.71	24.98	16.57	30.15	20.68
Merged-chr8-25543601-4	chr8	25543536	25543736	+	885.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	12447.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	10.5	14.34	7.99	12.47	17.59	17.56	19.27	18.2	22.42	15.06	31.15	19.42
Merged-chr15-97422355-3	chr15	97422243	97422443	+	885.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175056.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	18.98	14.09	11.41	20.11	21.68	12.54	20.93	19.99	16.72	12.55	11.05	8.14
Merged-chr15-102204137-3	chr15	102204033	102204233	+	885.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	133.0	NM_001358674	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	16.15	16.1	5.13	11.66	8.18	19.13	8.3	10.4	22.82	17.07	15.58	13.16
Merged-chr15-12052397-2	chr15	12052286	12052486	+	885.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56379.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	17.77	3.27	19.97	10.86	14.73	5.02	5.98	23.1	4.33	4.02	4.52	4.39
Merged-chr7-84779316-3	chr7	84779221	84779421	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74250.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	6.86	11.82	11.41	19.31	21.27	22.58	17.94	19.96	9.83	12.05	29.65	10.65
Merged-chr7-45708334-3	chr7	45708227	45708427	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016974, exon 3 of 4)	exon (NM_016974, exon 3 of 4)	3080.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	14.54	7.29	6.28	13.27	8.18	5.96	5.98	7.77	11.8	17.57	9.04	7.21
Merged-chr10-37192235-5	chr10	37192139	37192339	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53313.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	11.31	5.79	9.13	5.23	16.77	14.11	8.64	8.69	5.9	9.04	11.05	8.77
Merged-chr11-33162403-3	chr11	33162301	33162501	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008722, intron 1 of 10)	intron (NM_008722, intron 1 of 10)	805.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	12.92	22.89	11.41	14.08	12.27	37.0	21.92	23.02	14.55	21.09	14.07	10.65
Merged-chr7-84272479-3	chr7	84272385	84272585	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007488, intron 12 of 18)	intron (NM_007488, intron 12 of 18)	-120592.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	12.11	10.56	17.11	8.85	19.64	10.98	15.94	16.57	70.61	57.74	89.44	50.75
Merged-chr2-32631878-3	chr2	32631783	32631983	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	2383.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	18.17	11.82	15.4	6.03	18.82	27.28	5.31	6.76	10.23	11.05	26.63	12.22
Merged-chr15-68134806-2	chr15	68134712	68134912	+	885.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152182, intron 9 of 13)	intron (NR_152182, intron 9 of 13)	124044.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	11.31	7.29	19.97	22.52	13.09	18.19	28.9	40.26	7.47	3.51	15.07	13.16
Merged-chr11-21453902-3	chr11	21453803	21454003	+	885.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57277.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	8.48	10.06	13.12	2.41	16.36	15.05	5.65	9.59	16.72	16.57	9.04	5.01
Merged-chrX-85710552-3	chrX	85710452	85710652	+	885.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 18 of 19)	intron (NM_212444, intron 18 of 19)	66267.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	18.17	9.31	17.68	4.83	16.77	34.49	14.28	19.65	24.0	27.62	37.69	9.4
Merged-chr4-148501075-1	chr4	148500975	148501175	+	885.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	-613.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	7.67	4.02	13.69	8.85	17.59	7.84	8.97	14.41	0.79	1.51	0.0	1.57
Merged-chr5-21045683-2	chr5	21045586	21045786	+	885.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10225.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.85	3.02	10.27	3.22	5.32	7.53	14.95	15.03	12.19	19.58	9.04	12.22
Merged-chr11-40135213-2	chr11	40135117	40135317	+	885.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	557465.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	9.29	12.32	13.69	13.27	32.73	31.36	24.58	35.97	3.74	2.51	3.52	1.88
Merged-chr7-19503678-2	chr7	19503580	19503780	+	885.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4651.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	16.96	5.53	2.28	5.63	16.36	20.38	6.31	4.46	23.21	23.6	11.05	4.07
Merged-chr18-9491212-3	chr18	9491131	9491331	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41077.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.92	6.54	19.4	11.66	24.14	11.29	17.27	31.57	19.67	10.04	9.04	10.02
Merged-chr14-79290810-3	chr14	79290715	79290915	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10820.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	9.69	9.31	23.39	9.65	19.64	14.42	12.29	13.54	12.39	19.08	20.6	14.41
Merged-chr17-29513369-3	chr17	29513267	29513467	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22322.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	26.25	20.63	13.69	16.89	16.77	6.59	3.99	6.73	21.05	22.09	31.15	11.28
Merged-chr2-25498084-3	chr2	25497986	25498186	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027062)	TTS (NM_027062)	2420.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	15.34	5.79	11.41	6.44	18.82	14.11	8.3	15.11	17.51	28.12	34.17	10.02
Merged-chr14-79533477-3	chr14	79533372	79533572	+	885.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17798.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	11.71	12.07	11.98	10.46	14.73	14.11	4.98	11.89	19.28	13.56	13.57	6.58
Merged-chr1-34860413-1	chr1	34860313	34860513	+	885.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	MLTR14|LTR|ERV1	10424.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.25	5.03	2.28	5.63	9.82	12.23	13.95	10.65	6.29	5.52	15.07	6.89
Merged-chr9-123850243-3	chr9	123850161	123850361	+	885.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	1400.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	13.73	31.19	9.13	4.42	29.46	38.88	8.3	10.09	19.87	26.61	15.58	10.65
Merged-chrX-12960020-1	chrX	12959920	12960120	+	885.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17853.0	NR_153101	75037.0	Mm.387976	NR_153101		4930500G05Rik	-	RIKEN cDNA 4930500G05 gene	ncRNA	0.81	3.02	7.99	3.22	11.86	9.72	5.65	6.25	5.51	9.04	5.02	1.88
Merged-chr13-37913340-1	chr13	37913240	37913440	+	885.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	24469.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.23	3.27	6.28	5.23	6.95	9.41	8.97	10.79	7.67	4.02	8.54	7.21
Merged-chr2-48333114-3	chr2	48333005	48333205	+	885.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-481004.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	8.08	10.06	7.99	5.23	41.73	28.85	27.9	37.37	34.22	43.18	53.77	28.82
Merged-chr6-38982853-2	chr6	38982755	38982955	+	885.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 4 of 12)	ORR1D2|LTR|ERVL-MaLR	63869.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	10.9	12.83	5.7	6.03	19.23	6.9	7.97	9.9	14.55	13.05	17.08	13.47
Merged-chr7-128226558-3	chr7	128226405	128226605	+	885.622192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10852.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	11.31	11.07	1.71	10.05	15.55	20.38	15.61	2.19	29.5	23.1	18.09	8.14
Merged-chr17-43579918-3	chr17	43579832	43580032	+	885.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	11481.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	11.71	9.06	3.99	0.4	13.91	19.76	9.63	7.46	16.13	13.05	16.58	5.64
Merged-chr2-166188201-3	chr2	166188117	166188317	+	885.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32534.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	15.34	10.31	15.4	10.86	24.55	18.19	11.63	21.95	17.11	13.05	17.08	8.77
Merged-chr13-99327580-3	chr13	99327447	99327647	+	885.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	17131.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	8.88	5.53	15.4	8.85	15.55	16.62	12.95	15.36	15.34	1.51	13.06	10.02
Merged-chr13-104110163-3	chr13	104110065	104110265	+	885.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	424.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	14.54	6.54	13.69	14.08	17.59	10.66	7.64	16.88	23.8	29.12	14.57	20.36
Merged-chr15-66893394-3	chr15	66893296	66893496	+	885.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	2003.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	11.71	4.28	17.11	7.24	19.23	10.98	11.96	15.45	14.36	12.55	25.63	11.9
Merged-chr1-180890749-1	chr1	180890649	180890849	+	885.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2359.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	2.42	4.02	6.85	2.41	4.09	10.66	7.97	9.76	7.87	1.0	10.05	1.25
Merged-chr16-30870198-3	chr16	30870101	30870301	+	885.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	211231.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.04	8.3	13.12	10.05	17.59	15.99	11.63	14.36	24.78	14.56	16.58	15.66
Merged-chr13-117127535-2	chr13	117127436	117127636	+	885.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2489.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	14.94	11.57	6.85	6.44	4.91	10.98	1.99	9.76	7.47	6.03	7.54	5.33
Merged-chrX-94126159-3	chrX	94126059	94126259	+	885.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2392.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	14.54	11.82	18.25	10.46	22.5	9.41	10.3	22.07	22.42	22.59	27.64	11.59
Merged-chr15-35030502-1	chr15	35030402	35030602	+	885.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357821, intron 7 of 11)	intron (NM_001357821, intron 7 of 11)	125304.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	2.42	7.04	5.7	11.66	18.0	11.92	20.93	25.37	5.9	8.54	30.15	8.77
Merged-chr2-46185422-1	chr2	46185322	46185522	+	885.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	488817.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.81	5.03	7.99	12.07	2.86	7.53	11.96	11.41	5.11	6.53	12.06	6.58
Merged-chr4-11475533-3	chr4	11475415	11475615	+	885.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10443.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	12.52	4.28	18.83	12.07	8.59	3.45	3.99	9.95	12.19	9.04	22.11	4.7
Merged-chr9-100507750-3	chr9	100507645	100507845	+	885.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-889.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	15.75	11.07	16.54	15.28	12.68	14.74	12.29	19.99	12.59	7.53	14.57	4.07
Merged-chr10-94304549-3	chr10	94304455	94304655	+	885.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5852.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	18.57	17.61	13.12	16.49	19.64	18.81	10.63	25.91	11.01	8.54	14.07	5.95
Merged-chr11-37077443-2	chr11	37077350	37077550	+	885.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133209.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.85	3.02	7.42	10.46	11.45	9.41	9.97	32.89	22.23	14.56	27.13	9.08
Merged-chr15-78915876-3	chr15	78915757	78915957	+	885.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020271, intron 1 of 1)	intron (NM_020271, intron 1 of 1)	1938.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	18.57	14.09	5.7	9.65	14.32	11.6	2.33	6.22	16.33	14.56	15.07	13.47
Merged-chr5-90685951-3	chr5	90685857	90686057	+	885.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45430.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	12.11	4.78	10.84	22.52	21.68	9.72	33.88	45.62	23.01	21.09	19.09	11.59
Merged-chr1-105891215-3	chr1	105891092	105891292	+	885.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99090.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	14.54	13.33	23.39	9.65	11.45	15.99	8.64	22.74	13.77	23.6	27.13	6.27
Merged-chr5-5514917-2	chr5	5514825	5515025	+	885.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022890)	promoter-TSS (NM_022890)	51.0	NM_022890	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	6.06	5.53	7.99	7.24	7.77	7.21	14.62	15.39	12.0	6.03	12.56	7.21
Merged-chr17-55932056-3	chr17	55931959	55932159	+	885.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13200.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	16.56	22.89	10.27	3.62	14.73	10.03	9.97	17.33	15.93	13.56	12.06	19.42
Merged-chr13-28844185-3	chr13	28844089	28844289	+	885.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	41233.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	26.65	21.63	10.84	15.69	33.55	22.58	22.59	37.65	12.0	12.55	15.58	7.21
Merged-chr10-85587956-1	chr10	85587856	85588056	+	885.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028709, intron 3 of 16)	intron (NM_028709, intron 3 of 16)	-10455.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	1.33	0.06	26.55	14.56	23.11	22.24
Merged-chr7-31132238-3	chr7	31132145	31132345	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 18 of 18)	intron (NR_153431, intron 18 of 18)	-5222.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	12.11	8.05	27.38	14.08	27.82	19.44	23.25	25.51	8.26	6.03	8.04	8.77
Merged-chr13-89505043-3	chr13	89504925	89505125	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35611.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	9.29	8.05	10.84	22.52	4.5	4.7	7.64	6.93	26.95	24.1	56.78	19.42
Merged-chr10-120979991-3	chr10	120979901	120980101	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-671.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	16.56	11.07	2.28	3.62	13.5	17.56	7.97	13.79	15.14	9.54	13.06	7.21
Merged-chr13-23571816-3	chr13	23571729	23571929	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	429.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	17.77	9.56	11.98	12.47	15.96	11.6	15.28	8.66	20.26	22.09	26.13	15.98
Merged-chr11-59449955-3	chr11	59449832	59450032	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037992)	promoter-TSS (NR_037992)	102.0	NM_001356454	67826.0	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	9.29	17.36	17.11	16.09	13.09	21.64	15.61	15.9	14.75	13.05	14.57	10.02
Merged-chr10-75932398-3	chr10	75932304	75932504	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175329)	promoter-TSS (NM_175329)	98.0	NM_001306184	17385.0	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	11.71	12.32	13.12	12.47	8.18	17.25	14.28	11.13	4.33	9.04	5.53	13.78
Merged-chr4-105109836-3	chr4	105109726	105109926	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178143)	promoter-TSS (NM_178143)	72.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	16.15	13.83	6.28	12.07	9.41	8.47	8.97	6.0	15.74	9.04	20.6	8.46
Merged-chr2-160365676-3	chr2	160365583	160365783	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	1382.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	17.77	13.33	13.69	11.26	13.09	16.93	15.94	20.13	11.6	18.08	14.07	16.92
Merged-chr13-44732734-3	chr13	44732638	44732838	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	1467.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	16.56	23.9	12.55	8.04	14.32	23.52	7.31	10.29	31.27	11.55	26.13	21.93
Merged-chr16-89718706-3	chr16	89718604	89718804	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99648.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	17.77	14.84	11.98	11.66	21.27	14.42	13.29	18.56	16.72	10.54	16.58	8.77
Merged-chr7-24661337-3	chr7	24661237	24661437	+	885.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030681)	promoter-TSS (NR_030681)	43.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	8.88	12.32	2.28	2.41	12.68	13.8	7.64	10.43	11.6	13.05	7.03	4.7
Merged-chr2-165487028-3	chr2	165486928	165487128	+	885.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6286.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	31.09	18.86	16.54	5.63	15.96	16.62	6.64	7.65	31.86	22.09	20.6	8.77
Merged-chr18-45881734-1	chr18	45881634	45881834	+	885.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	163526.0	NR_040342	107003.0	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	3.23	2.26	0.0	0.0	7.77	9.72	19.6	23.47	12.19	9.04	8.54	1.88
Merged-chr4-86648623-1	chr4	86648523	86648723	+	885.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21436.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.04	4.02	4.56	9.65	14.73	6.59	9.97	13.82	2.16	2.51	6.53	3.76
Merged-chr2-103488974-3	chr2	103488891	103489091	+	885.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3838.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	11.71	13.08	11.41	18.5	14.32	10.35	6.31	12.11	20.46	24.1	22.61	10.65
Merged-chr1-151583690-3	chr1	151583610	151583810	+	885.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	12337.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	16.15	11.32	17.68	15.28	10.64	9.09	4.98	6.17	12.98	13.56	18.59	4.7
Merged-chr3-95687945-3	chr3	95687859	95688059	+	885.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	-42.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	8.48	14.09	9.7	11.66	15.96	22.26	19.93	24.03	16.13	21.09	15.58	10.02
Merged-chr16-38679648-4	chr16	38679561	38679761	+	885.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	33374.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.25	5.28	17.68	6.44	13.91	19.44	8.97	15.76	12.98	12.55	15.58	11.9
Merged-chr7-144981885-3	chr7	144981789	144981989	+	885.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41964.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.08	8.55	23.96	10.86	20.05	12.86	12.95	16.63	14.16	5.52	13.06	5.95
Merged-chr1-152677261-3	chr1	152677149	152677349	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-52032.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.88	12.32	9.13	6.84	15.55	9.72	17.94	19.82	27.14	22.09	26.63	10.96
Merged-chr12-79070204-1	chr12	79070104	79070304	+	885.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181073, intron 18 of 28)	intron (NM_181073, intron 18 of 28)	19466.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	4.44	1.01	4.56	0.4	11.45	22.26	10.96	10.43	1.77	0.0	1.0	0.94
Merged-chr5-77246310-3	chr5	77246211	77246411	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19183.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	18.57	30.69	11.41	8.45	18.41	36.69	28.57	10.4	40.12	38.16	37.69	7.52
Merged-chr6-3355073-1	chr6	3354973	3355173	+	885.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	44498.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	1.62	0.0	4.56	3.22	3.68	1.25	2.66	4.6	17.51	13.56	14.57	10.65
Merged-chrX-17571740-3	chrX	17571637	17571837	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313745, intron 1 of 3)	intron (NM_001313745, intron 1 of 3)	270.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	14.94	5.03	12.55	6.84	11.86	11.92	16.94	11.94	10.03	11.05	19.09	7.52
Merged-chr5-113649916-3	chr5	113649831	113650031	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	459.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.08	9.31	14.83	13.67	25.36	21.01	12.62	14.69	6.88	13.56	24.12	18.17
Merged-chr5-117904159-2	chr5	117904051	117904251	+	885.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 8 of 27)	intron (NM_008712, intron 8 of 27)	37312.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.04	9.31	2.85	4.02	9.41	8.78	13.29	16.01	14.95	15.06	22.11	7.83
Merged-chr8-125489009-2	chr8	125488904	125489104	+	885.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3829.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	11.71	16.1	18.25	15.28	9.0	13.48	10.3	8.94	7.47	5.52	22.61	4.07
Merged-chr11-120358073-2	chr11	120357970	120358170	+	885.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3464.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	2.42	5.79	14.26	6.03	14.32	16.31	8.64	9.22	14.55	6.03	17.59	12.22
Merged-chr4-152448811-3	chr4	152448718	152448918	+	885.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252655)	promoter-TSS (NM_001252655)	37.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	19.38	12.07	11.98	6.84	37.23	22.58	27.57	29.38	11.41	12.05	26.13	15.66
Merged-chr3-115815682-3	chr3	115815586	115815786	+	885.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72373.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	8.48	7.55	9.7	19.71	15.96	17.25	18.93	24.56	23.6	16.07	27.64	18.48
Merged-chr16-4878532-4	chr16	4878469	4878669	+	885.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1282.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	5.25	7.55	9.13	5.23	7.36	5.33	16.28	5.69	9.83	12.55	13.06	9.71
Merged-chr12-82276027-3	chr12	82275925	82276125	+	885.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-35324.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	12.92	7.04	14.83	10.86	6.95	16.62	10.96	14.41	11.01	14.06	22.11	10.65
Merged-chr6-87923841-3	chr6	87923746	87923946	+	885.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173737, intron 4 of 6)	intron (NM_173737, intron 4 of 6)	9870.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	15.34	11.07	15.97	23.33	15.55	10.03	13.62	18.64	10.82	7.53	22.11	12.53
Merged-chr6-87993005-3	chr6	87992911	87993111	+	885.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11328.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	8.48	12.32	20.54	12.87	14.73	17.25	13.62	23.75	16.92	14.06	22.11	15.98
Merged-chrX-95968808-3	chrX	95968705	95968905	+	885.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11831.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	8.08	9.31	2.28	12.47	24.14	19.44	5.31	11.78	28.72	31.63	55.78	28.51
Merged-chr13-12340764-2	chr13	12340666	12340866	+	885.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033268)	promoter-TSS (NM_033268)	-34.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	9.69	3.02	5.13	1.61	13.91	9.09	9.97	12.62	14.75	13.05	12.06	16.6
Merged-chr12-33110949-3	chr12	33110841	33111041	+	885.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015602)	TTS (NR_015602)	-18066.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	14.13	11.07	18.83	7.24	21.27	20.07	16.94	17.41	12.39	8.54	14.57	4.7
Merged-chr12-69214533-3	chr12	69214429	69214629	+	885.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13661.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	10.09	15.34	9.7	8.04	14.32	26.65	10.3	16.82	38.94	25.11	29.14	17.86
Merged-chr7-126755044-3	chr7	126754939	126755139	+	885.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4587.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	22.61	7.04	10.84	11.66	20.86	18.81	7.97	12.28	27.93	18.58	38.19	11.59
Merged-chr17-42892161-1	chr17	42892061	42892261	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-15737.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.55	16.57	16.58	7.83
Merged-chr5-137883541-1	chr5	137883441	137883641	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11783.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	8.08	5.53	7.99	6.03	8.18	6.27	5.65	12.64	6.69	9.04	6.53	4.39
Merged-chr4-88351120-2	chr4	88350988	88351188	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 28 of 43)	intron (NM_001081184, intron 28 of 43)	87838.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	10.5	5.53	6.85	8.85	13.91	5.33	10.63	13.54	9.24	10.54	8.54	6.27
Merged-chr1-170535447-1	chr1	170535347	170535547	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	21663.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.81	0.0	0.57	0.8	6.55	3.76	6.64	7.23	1.38	2.01	4.52	2.51
Merged-chr3-119779432-3	chr3	119779317	119779517	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	L1ME2z|LINE|L1	3971.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	16.56	5.53	17.68	8.85	12.27	16.62	14.62	25.99	13.37	16.07	16.58	10.34
Merged-chr14-34489345-1	chr14	34489245	34489445	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009758, intron 1 of 12)	L2|LINE|L2	13201.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	2.83	2.01	2.28	4.02	6.14	10.35	1.99	12.31	7.28	7.53	4.02	9.08
Merged-chr8-35592012-1	chr8	35591912	35592112	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-2992.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.65	7.29	7.42	0.8	2.86	21.01	5.65	2.24	16.33	8.03	6.53	2.51
Merged-chr2-132151799-3	chr2	132151695	132151895	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-6475.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	8.88	11.57	10.84	7.64	16.36	34.18	16.28	3.28	13.37	25.61	14.57	5.01
Merged-chr19-41386188-2	chr19	41386050	41386250	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1080.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.44	4.53	6.28	6.44	6.55	9.41	6.64	14.58	11.8	5.52	8.04	6.89
Merged-chr8-80314088-3	chr8	80314008	80314208	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179937.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	11.71	10.82	11.98	10.46	15.55	14.42	20.93	27.03	8.85	17.07	22.61	8.46
Merged-chr2-18609552-1	chr2	18609452	18609652	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-62910.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	4.85	5.53	1.14	2.41	2.05	0.63	4.65	1.37	6.69	3.01	3.01	5.95
Merged-chr7-128138557-1	chr7	128138457	128138657	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021334, intron 14 of 29)	MTEa|LTR|ERVL-MaLR	8989.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	7.67	5.28	13.69	6.84	13.09	4.39	5.65	9.93	3.74	6.53	5.53	3.13
Merged-chr10-68715599-2	chr10	68715510	68715710	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8136.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	1.62	5.28	5.7	0.0	9.82	7.53	10.96	10.65	23.21	15.06	24.62	15.35
Merged-chr7-78913192-1	chr7	78913092	78913292	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-232.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	3.23	4.02	3.42	6.44	4.5	7.53	1.99	7.54	4.13	16.07	10.55	7.83
Merged-chr6-94274126-1	chr6	94274026	94274226	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	9791.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.5	0.0	3.22	7.77	3.45	7.31	12.53	0.0	2.01	0.0	0.94
Merged-chr5-99455773-1	chr5	99455673	99455873	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	MTC|LTR|ERVL-MaLR	-202846.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.04	3.02	9.13	4.83	6.55	7.84	4.98	1.82	12.0	11.55	8.04	4.7
Merged-chr13-8641576-1	chr13	8641476	8641676	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	229468.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	1.21	0.5	1.14	0.8	7.77	9.09	9.3	18.84	3.15	9.04	4.02	2.51
Merged-chr13-80968719-1	chr13	80968619	80968819	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	RLTR16|LTR|ERVK	4645.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.65	2.52	3.42	9.25	6.14	3.45	5.98	9.31	4.13	4.52	5.02	7.21
Merged-chr6-50384560-3	chr6	50384463	50384663	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	ORR1E|LTR|ERVL-MaLR	-1726.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	7.27	16.35	13.69	0.0	6.55	18.19	5.65	7.15	17.7	14.06	16.08	4.7
Merged-chr6-72023798-1	chr6	72023698	72023898	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	18730.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	4.04	6.04	3.99	0.8	3.27	4.39	5.31	2.44	13.96	14.56	4.02	5.33
Merged-chr11-6497838-2	chr11	6497732	6497932	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21756.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	29.48	33.45	34.23	26.55	0.41	0.0	0.66	0.0	11.21	6.03	17.59	3.45
Merged-chr2-10972193-1	chr2	10972093	10972293	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEi|LINE|L1	-200189.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	6.46	1.76	1.14	1.21	2.05	5.02	7.97	6.48	0.59	2.01	3.01	0.63
Merged-chr5-64267487-1	chr5	64267387	64267587	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37130.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	2.01	1.14	1.21	4.91	4.39	8.3	8.16	5.51	3.01	0.5	2.19
Merged-chr11-84597146-4	chr11	84597064	84597264	+	884.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71504.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	11.31	13.58	11.41	6.84	3.68	9.72	5.31	5.75	16.92	15.06	7.54	11.28
Merged-chr4-106529942-3	chr4	106529841	106530041	+	884.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31097.0	NM_053272	74754.0	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	10.9	16.6	10.84	12.87	14.73	15.05	11.29	13.63	13.77	12.55	13.06	10.65
Merged-chr19-7268903-3	chr19	7268756	7268956	+	884.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_054048, exon 2 of 13)	5' UTR (NM_054048, exon 2 of 13)	577.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	18.98	10.56	9.7	5.23	18.82	11.29	6.31	7.15	13.57	19.08	16.08	7.52
Merged-chr13-89488392-3	chr13	89488284	89488484	+	884.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52252.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	11.71	18.86	21.68	31.37	7.77	6.9	4.32	8.47	52.71	41.67	69.85	21.62
Merged-chr14-75841923-3	chr14	75841836	75842036	+	884.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045294)	TTS (NR_045294)	3028.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	10.9	8.8	13.12	18.5	15.14	9.09	13.95	10.79	16.33	23.1	21.1	11.28
Merged-chr13-93300792-3	chr13	93300715	93300915	+	884.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2942.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	23.02	12.58	9.7	21.32	15.14	12.54	15.28	19.26	14.36	14.56	16.08	6.58
Merged-chr7-35554923-3	chr7	35554845	35555045	+	884.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033080, intron 1 of 2)	intron (NM_033080, intron 1 of 2)	983.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	8.08	11.32	13.12	6.84	15.14	10.35	15.94	14.07	17.31	9.54	23.11	9.71
Merged-chr17-34557147-3	chr17	34557063	34557263	+	884.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7132.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	19.38	10.06	6.28	6.84	19.64	19.76	12.95	22.35	17.51	19.58	17.59	11.9
Merged-chr4-130804029-3	chr4	130803920	130804120	+	884.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	11483.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	10.9	10.06	14.26	6.44	9.41	10.66	13.29	16.57	13.96	17.07	15.58	5.64
Merged-chr5-142551138-3	chr5	142551037	142551237	+	884.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289588)	promoter-TSS (NM_001289588)	-39.0	NM_001289588	231858.0	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	14.54	16.6	5.7	7.24	11.45	12.54	5.31	8.3	20.85	13.05	14.07	7.52
Merged-chr6-51858041-3	chr6	51857948	51858148	+	884.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154501.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	13.73	11.57	9.13	10.86	18.0	14.11	14.62	12.53	22.82	18.58	16.08	14.1
Merged-chr19-46869684-3	chr19	46869588	46869788	+	884.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102471, intron 5 of 6)	intron (NM_001102471, intron 5 of 6)	92663.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	8.48	14.84	10.84	12.87	26.18	17.56	7.31	24.14	25.37	23.1	20.1	16.6
Merged-chr2-71744986-3	chr2	71744883	71745083	+	884.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	25566.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	12.52	13.33	9.13	21.32	27.0	12.54	29.23	41.86	12.98	3.01	16.58	10.96
Merged-chr13-48870182-3	chr13	48870055	48870255	+	884.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	CpG	730.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	4.44	16.35	15.97	6.84	6.55	6.59	18.27	11.05	11.01	13.05	12.06	8.77
Merged-chr14-51140553-1	chr14	51140453	51140653	+	884.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6214.0	NM_011271	19752.0	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	4.85	2.26	3.42	4.83	13.5	8.78	9.3	12.84	4.92	8.54	7.03	6.89
Merged-chr9-62812943-3	chr9	62812839	62813039	+	884.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1291.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	14.94	12.07	15.97	6.84	26.18	28.22	14.28	21.98	15.74	13.56	13.57	12.22
Merged-chr11-97310199-3	chr11	97310119	97310319	+	884.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5497.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	10.09	4.28	7.99	10.05	35.59	36.06	22.26	16.99	13.18	12.05	5.53	12.22
Merged-chr8-108182970-3	chr8	108182867	108183067	+	884.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	401710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	7.27	12.32	17.68	15.28	6.95	13.48	12.62	12.79	9.64	11.05	20.6	17.23
Merged-chr4-107347634-3	chr4	107347470	107347670	+	884.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205156, intron 7 of 8)	intron (NM_001205156, intron 7 of 8)	-20214.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	6.46	5.28	11.41	6.44	10.64	7.21	4.32	6.9	6.1	7.53	13.06	12.22
Merged-chr1-132477053-3	chr1	132476960	132477160	+	884.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	-307.0	NM_001357486	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	14.54	7.55	15.97	10.46	10.23	10.35	2.33	12.03	16.92	12.05	12.06	12.84
Merged-chr5-30867090-1	chr5	30866990	30867190	+	884.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001310516)	TTS (NM_001310516)	-2489.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	4.04	2.52	2.28	12.07	5.73	10.66	11.96	8.16	5.7	6.03	7.03	2.51
Merged-chr12-80235481-2	chr12	80235369	80235569	+	884.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	24902.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	13.73	9.81	7.99	3.62	6.55	11.29	8.3	10.46	24.19	7.53	8.54	3.76
Merged-chr12-91581901-3	chr12	91581799	91581999	+	884.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	7750.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	14.13	13.33	10.27	14.48	11.45	15.68	16.28	17.19	23.21	6.03	23.62	9.71
Merged-chr6-8686898-3	chr6	8686788	8686988	+	884.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71570.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	10.5	9.31	9.13	10.46	12.68	19.13	10.3	17.92	21.05	20.08	21.61	5.95
Merged-chr4-63385959-3	chr4	63385857	63386057	+	884.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12283.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	12.11	8.3	11.41	7.24	17.18	15.37	7.97	12.11	24.39	20.08	19.09	11.28
Merged-chr11-109434479-1	chr11	109434379	109434579	+	884.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252193, intron 6 of 7)	intron (NM_001252193, intron 6 of 7)	-5599.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	6.86	13.08	1.14	3.22	1.64	5.96	3.65	3.22	23.01	14.06	15.07	7.21
Merged-chr3-20255323-1	chr3	20255223	20255423	+	884.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029706, intron 9 of 10)	MER20|DNA|hAT-Charlie	-13142.0	NM_007753	12873.0	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	3.23	4.53	1.14	4.83	10.23	7.53	1.99	9.45	5.7	10.04	3.52	3.76
Merged-chr6-120156036-3	chr6	120155927	120156127	+	884.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-37796.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	13.73	8.05	13.69	9.65	19.23	16.93	12.95	12.25	15.14	17.57	19.09	10.96
Merged-chr1-170644460-3	chr1	170644353	170644553	+	884.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177068)	promoter-TSS (NM_177068)	-79.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	10.09	8.05	13.69	10.46	66.68	56.13	43.51	71.64	35.21	39.67	51.76	32.89
Merged-chr6-32319240-1	chr6	32319140	32319340	+	884.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	MTC|LTR|ERVL-MaLR	-191901.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.67	3.52	3.42	18.1	6.95	9.72	11.29	17.89	0.79	1.51	8.54	7.83
Merged-chr19-56548098-3	chr19	56547996	56548196	+	884.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	26.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	12.11	9.81	13.69	2.41	11.45	10.03	9.97	6.53	14.36	16.07	16.08	5.33
Merged-chr12-73046757-3	chr12	73046657	73046857	+	884.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009189)	promoter-TSS (NM_009189)	-45.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	16.15	14.09	11.41	18.5	13.09	13.48	18.6	20.47	14.95	16.57	13.57	13.47
Merged-chr11-69803969-3	chr11	69803887	69804087	+	884.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027913, exon 1 of 1)	non-coding (NR_027913, exon 1 of 1)	318.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	16.56	12.83	8.56	14.88	13.91	19.44	8.3	14.8	24.98	11.55	23.11	12.22
Merged-chr6-148914098-3	chr6	148913981	148914181	+	884.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17844.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	21.0	8.55	11.41	25.34	20.46	15.37	17.27	34.91	13.37	8.03	50.25	22.87
Merged-chr5-43870889-3	chr5	43870795	43870995	+	884.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	2086.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.25	13.33	11.41	8.45	5.73	2.82	8.3	5.78	9.83	10.54	20.1	14.72
Merged-chr4-95849806-3	chr4	95849711	95849911	+	884.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	117224.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	10.09	11.82	14.26	18.1	11.05	11.92	11.29	16.32	17.51	10.54	20.6	10.02
Merged-chr2-145168197-3	chr2	145168102	145168302	+	884.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356497, intron 1 of 16)	CpG	427.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	18.98	16.6	26.24	26.95	9.0	12.86	10.96	19.74	15.14	12.05	30.65	10.65
Merged-chr11-68899234-3	chr11	68899138	68899338	+	884.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2328.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	7.67	10.06	10.27	16.49	11.86	14.74	12.29	23.52	13.77	13.56	17.59	12.22
Merged-chr7-82869960-1	chr7	82869860	82870060	+	884.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2627.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.44	4.78	0.57	8.45	12.27	7.21	11.29	13.26	11.01	4.02	3.52	2.82
Merged-chr13-81230323-3	chr13	81230220	81230420	+	884.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	266246.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	10.9	8.55	26.81	18.9	27.41	20.7	36.54	48.65	14.95	20.08	22.61	10.02
Merged-chr11-55077453-3	chr11	55077352	55077552	+	884.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	679.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	19.79	12.07	10.84	10.05	24.96	10.66	7.64	18.42	12.19	12.05	18.59	9.71
Merged-chr19-17339761-2	chr19	17339657	17339857	+	884.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136484)	promoter-TSS (NM_001136484)	-252.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	9.69	12.58	14.26	15.28	29.46	17.56	16.94	17.97	6.88	11.05	8.04	5.95
Merged-chr10-10396277-3	chr10	10396178	10396378	+	884.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 21 of 36)	intron (NM_001127353, intron 21 of 36)	76036.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	12.11	19.37	10.84	13.67	13.09	12.86	10.63	16.85	12.78	21.59	24.12	8.46
Merged-chr6-70871689-3	chr6	70871597	70871797	+	884.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27182.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	7.27	12.32	3.42	18.9	10.64	14.74	14.62	15.87	16.33	12.05	6.03	8.77
Merged-chr16-4558080-3	chr16	4557984	4558184	+	884.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	1636.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	12.92	3.27	3.99	13.67	11.05	9.41	5.65	11.19	10.42	15.06	23.11	7.21
Merged-chr1-75316943-3	chr1	75316835	75317035	+	884.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	82.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	8.08	17.1	11.98	10.86	11.45	10.98	17.94	9.11	12.59	17.07	9.55	5.64
Merged-chr16-50251554-2	chr16	50251464	50251664	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 7 of 16)	ORR1E|LTR|ERVL-MaLR	-178712.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	6.46	6.79	2.85	1.21	6.95	30.1	6.64	1.04	12.78	16.07	4.52	5.33
Merged-chr3-152122886-1	chr3	152122786	152122986	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	43014.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	4.85	0.5	9.7	8.85	15.14	19.13	10.3	6.79	4.72	5.52	5.02	1.88
Merged-chr1-93124237-1	chr1	93124137	93124337	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11003.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	2.42	2.52	9.13	10.05	9.0	6.9	14.62	20.94	4.92	2.01	6.53	3.45
Merged-chr18-79978329-2	chr18	79978235	79978435	+	884.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68560.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	12.52	12.32	17.11	22.12	13.91	11.6	19.6	25.65	1.77	2.01	1.51	0.31
Merged-chr11-12050700-1	chr11	12050600	12050800	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13280.0	NM_010345	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	3.63	3.77	5.7	14.88	12.68	5.64	5.31	14.16	8.46	7.03	14.57	7.21
Merged-chr2-117092058-2	chr2	117091957	117092157	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29014.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	5.65	3.52	3.42	7.24	6.14	4.39	7.97	8.89	11.6	8.03	11.56	3.76
Merged-chr5-20943749-4	chr5	20943625	20943825	+	884.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-7264.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	8.48	5.28	10.27	7.24	11.05	12.86	10.96	2.61	12.59	10.04	11.05	8.77
Merged-chr17-12250147-4	chr17	12250125	12250325	+	884.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	68435.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	2.02	5.53	10.27	2.82	101.05	158.67	97.66	72.87	217.93	180.76	191.45	116.54
Merged-chr10-127628742-1	chr10	127628642	127628842	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7594.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.81	2.26	0.57	7.24	7.36	5.02	21.26	13.49	6.1	2.51	4.02	3.13
Merged-chr15-53386892-2	chr15	53386799	53386999	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40716.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.06	7.55	4.56	12.07	9.41	7.84	12.95	18.53	11.41	14.06	25.63	14.72
Merged-chr1-173630795-3	chr1	173630693	173630893	+	884.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175026)	promoter-TSS (NM_175026)	-66.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	18.57	23.9	36.51	32.98	10.64	11.29	6.98	5.44	39.53	20.08	26.63	14.1
Merged-chr17-42910611-3	chr17	42910523	42910723	+	884.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-34199.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	8.08	11.32	5.7	0.8	14.32	16.93	7.31	9.62	64.71	52.72	41.2	18.8
Merged-chrX-38180187-3	chrX	38180042	38180242	+	884.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-9651.0	NM_020256	56805.0	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	8.88	8.8	7.99	7.24	11.45	11.92	15.94	5.5	6.1	13.56	11.05	4.7
Merged-chr18-50016894-3	chr18	50016740	50016940	+	884.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-14144.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	6.06	7.55	11.41	15.28	5.32	4.7	8.64	10.01	10.03	8.03	5.53	8.77
Merged-chr18-53177332-3	chr18	53177238	53177438	+	884.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1046.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	12.92	7.8	13.69	18.9	19.23	9.41	7.64	22.99	16.92	23.6	24.62	11.28
Merged-chr5-123252054-2	chr5	123251951	123252151	+	884.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23861.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	17.36	22.39	21.11	18.1	22.09	26.65	7.97	6.95	16.33	8.03	10.05	5.64
Merged-chr15-58472551-3	chr15	58472443	58472643	+	884.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57075.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	14.54	6.04	11.41	8.45	21.27	13.8	5.98	23.89	22.42	17.57	17.59	18.17
Merged-chr11-90231793-3	chr11	90231696	90231896	+	884.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER103C|DNA|hAT-Charlie	-17680.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	13.73	6.79	3.99	11.26	11.05	31.04	18.93	23.3	26.16	16.07	14.07	12.84
Merged-chr5-140388084-3	chr5	140387984	140388184	+	884.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	1224.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	11.31	9.56	14.83	5.23	18.82	20.38	14.95	5.97	13.37	15.57	9.04	8.77
Merged-chr2-34779647-5	chr2	34779552	34779752	+	884.386658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 7 of 7)	B1F2|SINE|Alu	7562.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	15.75	19.62	6.85	8.45	19.64	41.08	5.98	5.8	23.6	33.64	11.56	8.46
Merged-chr17-70680046-2	chr17	70679948	70680148	+	884.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	118301.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	10.5	13.33	14.26	22.52	9.41	15.99	8.64	12.7	5.51	5.02	5.02	3.45
Merged-chr14-25473695-2	chr14	25473610	25473810	+	884.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14525.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	13.33	4.28	2.28	14.08	9.82	8.15	5.65	12.06	8.26	6.53	9.04	6.27
Merged-chr3-32715329-2	chr3	32715228	32715428	+	884.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019673, intron 4 of 13)	intron (NM_019673, intron 4 of 13)	6782.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	7.67	3.02	7.42	8.04	12.27	10.66	3.32	7.54	19.08	18.58	19.09	8.77
Merged-chr4-36285427-1	chr4	36285327	36285527	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	360026.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0.81	3.02	2.28	0.8	2.45	9.72	7.97	13.6	1.38	6.53	10.05	5.01
Merged-chr12-84201429-3	chr12	84201332	84201532	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-7417.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	20.59	11.07	11.41	12.47	20.46	24.15	15.94	18.7	21.83	28.62	18.09	11.9
Merged-chr6-124279115-1	chr6	124279015	124279215	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25536.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	8.08	5.03	2.85	7.24	9.41	2.82	11.96	11.8	7.28	7.03	8.04	3.13
Merged-chr7-45660992-3	chr7	45660899	45661099	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271993, intron 1 of 2)	intron (NM_001271993, intron 1 of 2)	5395.0	NM_018876	14344.0	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	8.48	17.36	25.67	11.26	17.59	22.58	13.95	19.07	18.49	13.05	20.1	22.87
Merged-chr9-89874689-1	chr9	89874589	89874789	+	884.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35086.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	2.83	4.78	1.14	8.04	2.86	5.02	2.66	1.35	9.83	16.57	19.6	8.46
Merged-chr16-21205240-1	chr16	21205140	21205340	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010143, exon 1 of 16)	exon (NM_010143, exon 1 of 16)	445.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	8.08	10.82	4.56	9.25	2.45	9.41	9.3	8.24	6.88	13.56	8.54	6.58
Merged-chr10-94525154-3	chr10	94525036	94525236	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	10279.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	12.92	8.55	7.42	5.23	15.55	19.13	12.62	16.26	14.75	14.56	12.06	3.76
Merged-chr3-108444188-3	chr3	108444093	108444293	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	1066.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	12.92	6.04	11.98	8.45	25.36	17.56	7.97	14.61	18.1	21.09	13.06	16.92
Merged-chr13-44407572-1	chr13	44407472	44407672	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-32155.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.46	2.01	3.42	8.85	13.09	8.78	5.65	10.82	4.33	13.56	7.03	7.83
Merged-chr12-3350572-3	chr12	3350474	3350674	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14558.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	9.29	12.32	19.4	4.42	17.59	19.76	7.64	17.47	12.98	8.03	15.07	11.9
Merged-chr4-141762797-1	chr4	141762697	141762897	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	16122.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	1.62	0.75	4.56	6.44	12.27	10.03	8.3	10.68	2.75	0.5	3.01	0.0
Merged-chr2-36231163-3	chr2	36231066	36231266	+	884.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	740.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	8.88	12.58	9.7	15.28	10.64	7.21	9.3	14.27	17.7	8.54	20.6	10.02
Merged-chr18-38943443-2	chr18	38943355	38943555	+	884.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-24756.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	13.73	9.56	10.84	17.29	14.73	31.98	18.6	25.6	3.34	8.54	9.04	6.27
Merged-chr1-134416736-4	chr1	134416552	134416752	+	884.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	988.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	8.48	6.54	10.27	3.22	3.68	4.7	3.65	5.02	7.67	9.54	9.04	5.64
Merged-chr16-38760888-3	chr16	38760772	38760972	+	884.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	18613.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	16.96	11.32	14.83	11.66	7.77	4.08	9.97	12.14	21.05	19.58	13.06	13.47
Merged-chr1-7100747-3	chr1	7100646	7100846	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	11826.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	18.17	24.4	18.83	9.65	9.0	16.62	7.64	11.61	32.06	25.11	16.58	12.53
Merged-chr2-20992758-3	chr2	20992654	20992854	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	23880.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	10.5	3.02	8.56	13.27	20.46	11.92	9.97	14.89	15.34	15.06	9.04	9.08
Merged-chr11-54619093-3	chr11	54618990	54619190	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 7 of 28)	intron (NM_001252494, intron 7 of 28)	22944.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	19.38	10.82	11.41	21.32	26.59	17.56	19.27	12.5	16.72	13.05	18.59	11.9
Merged-chr13-17836914-3	chr13	17836795	17836995	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31798.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	10.9	7.55	22.25	10.86	26.59	13.8	22.26	30.56	17.11	23.6	16.58	16.6
Merged-chr16-24165760-3	chr16	24165660	24165860	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83070.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	12.92	15.09	6.85	14.88	18.0	11.92	4.65	18.84	20.06	13.56	19.6	14.72
Merged-chr14-74689785-1	chr14	74689685	74689885	+	884.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-42512.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.83	3.02	3.42	5.23	9.0	7.53	13.29	11.27	10.62	8.03	14.07	5.01
Merged-chr9-96416596-2	chr9	96416499	96416699	+	884.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52168.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.46	1.76	10.27	8.04	9.0	5.64	11.63	10.54	6.1	7.03	21.1	10.02
Merged-chr19-8715000-3	chr19	8714888	8715088	+	884.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-1091.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	4.04	4.78	12.55	4.42	15.55	5.02	1.99	8.16	12.39	7.53	8.54	2.19
Merged-chr10-118599826-3	chr10	118599731	118599931	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-43306.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	12.52	19.62	18.83	16.49	22.5	17.87	8.64	14.94	21.05	12.05	21.1	13.47
Merged-chr5-62762907-1	chr5	62762807	62763007	+	884.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3270.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.04	1.51	2.85	2.01	10.23	9.41	7.97	8.92	4.52	4.02	2.01	5.01
Merged-chr15-99065847-3	chr15	99065761	99065961	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	8808.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	12.92	17.1	10.27	3.22	26.18	68.67	13.29	5.38	37.57	44.69	25.63	11.59
Merged-chr3-88460204-3	chr3	88460103	88460303	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	979.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	14.13	7.55	14.26	8.45	22.91	10.66	12.95	12.73	21.05	20.59	20.6	13.78
Merged-chr2-33047053-3	chr2	33046960	33047160	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355201, intron 6 of 29)	ORR1F|LTR|ERVL-MaLR	39397.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	13.73	12.07	16.54	13.27	17.59	15.05	10.96	21.42	13.57	5.02	14.07	14.41
Merged-chr15-100125565-2	chr15	100125484	100125684	+	884.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-28812.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.86	6.54	11.98	13.27	9.82	4.7	5.65	10.07	5.9	2.51	7.03	5.33
Merged-chr6-39377645-3	chr6	39377520	39377720	+	884.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028123)	promoter-TSS (NM_028123)	87.0	NM_001361619	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	18.57	11.57	19.97	9.25	18.41	18.5	7.97	13.77	12.39	13.05	19.6	6.89
Merged-chr10-81303515-3	chr10	81303407	81303607	+	884.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10544.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	17.77	6.29	11.41	6.44	12.68	22.89	9.3	13.6	19.08	21.09	13.57	15.66
Merged-chr19-43670760-3	chr19	43670641	43670841	+	884.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	4140.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	8.08	11.32	12.55	13.27	6.55	18.5	11.96	9.42	43.47	37.66	57.28	45.42
Merged-chr1-171607355-3	chr1	171607255	171607455	+	884.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102726)	promoter-TSS (NR_102726)	-21.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	10.9	13.33	17.11	9.65	18.41	11.92	12.29	11.27	23.01	29.12	16.08	9.71
Merged-chr18-60210786-3	chr18	60210694	60210894	+	884.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1283.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	13.73	8.8	9.13	12.87	11.05	13.17	12.29	11.05	29.31	17.07	32.16	14.1
Merged-chr12-86079072-2	chr12	86078959	86079159	+	884.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-18.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	3.23	5.79	10.27	10.05	15.96	9.09	12.29	16.4	13.96	8.54	23.62	15.35
Merged-chr4-21755256-3	chr4	21755146	21755346	+	884.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290420, intron 11 of 11)	intron (NM_001290420, intron 11 of 11)	11965.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	12.92	8.05	14.83	14.88	14.73	26.34	17.61	19.99	23.01	16.07	33.67	14.41
Merged-chr19-11343303-3	chr19	11343222	11343422	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-7176.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	8.88	20.12	21.11	15.28	31.09	16.93	23.58	23.55	27.73	11.05	15.07	24.12
Merged-chr11-40694988-3	chr11	40694866	40695066	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199274, exon 1 of 7)	5' UTR (NM_001199274, exon 1 of 7)	237.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	10.09	10.82	10.84	6.03	13.5	7.84	21.59	23.13	12.39	11.05	17.59	13.78
Merged-chr2-48768012-3	chr2	48767884	48768084	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-46125.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	5.65	7.04	22.25	18.5	19.64	7.84	33.55	25.91	9.44	11.55	27.64	12.53
Merged-chr19-7583354-3	chr19	7583260	7583460	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23833.0	NM_001356574	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	15.75	16.85	17.68	18.1	27.0	11.92	14.62	22.15	11.8	6.53	21.1	8.14
Merged-chr19-34553640-3	chr19	34553496	34553696	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	MLT2F|LTR|ERVL	2508.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	12.11	7.29	23.39	12.47	11.05	2.82	10.96	11.66	13.57	7.53	10.05	5.64
Merged-chr15-59016584-5	chr15	59016472	59016672	+	884.0457150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	T-rich|Low_complexity|Low_complexity	65454.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.04	4.02	6.85	6.03	4.91	7.21	4.98	4.51	5.51	9.04	4.52	14.1
Merged-chr14-70111092-4	chr14	70111006	70111206	+	884.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	11013.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	7.67	14.34	14.83	10.05	10.23	21.32	18.27	14.3	8.85	13.56	17.08	10.02
Merged-chr16-26626366-1	chr16	26626266	26626466	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152416, intron 2 of 12)	intron (NR_152416, intron 2 of 12)	44661.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	6.46	1.51	3.99	3.22	10.23	1.88	8.64	12.11	4.72	5.52	9.04	3.13
Merged-chr11-115413794-1	chr11	115413694	115413894	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	tRNA-Arg-CGG|tRNA|tRNA	6125.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	13.73	6.04	14.83	9.25	7.77	13.48	13.29	5.92	10.82	19.08	12.56	7.21
Merged-chr11-86840688-1	chr11	86840588	86840788	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33028.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	5.65	1.51	4.56	8.45	6.55	6.27	8.64	11.83	6.88	7.53	19.09	5.64
Merged-chr2-30979989-3	chr2	30979893	30980093	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144885, intron 3 of 8)	intron (NM_144885, intron 3 of 8)	1948.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	17.36	14.84	19.4	8.04	12.27	9.09	15.94	4.77	20.26	8.54	14.07	21.62
Merged-chr18-60810545-1	chr18	60810445	60810645	+	884.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010545, intron 6 of 7)	intron (NM_010545, intron 6 of 7)	-1531.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	4.04	10.56	3.99	0.0	4.09	1.88	1.99	0.31	15.74	10.54	5.53	5.95
Merged-chr16-31700417-3	chr16	31700315	31700515	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	4867.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	6.06	11.57	22.25	17.29	11.05	10.03	2.66	16.49	6.49	9.04	13.06	9.4
Merged-chr14-31164371-1	chr14	31164271	31164471	+	884.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	4270.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	4.04	3.52	2.85	4.83	7.36	10.66	6.64	4.51	14.55	12.05	5.02	7.21
Merged-chr9-99158329-3	chr9	99158212	99158412	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18101.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	12.92	11.32	13.12	10.86	8.59	10.66	6.64	23.05	16.92	7.53	13.06	10.96
Merged-chr18-25242347-1	chr18	25242247	25242447	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	73327.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.81	3.27	6.28	8.04	6.14	5.96	2.66	6.56	4.72	13.56	8.04	3.45
Merged-chr12-35308752-1	chr12	35308652	35308852	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113855.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	9.29	4.02	4.56	4.83	10.64	2.51	1.33	9.79	2.16	3.51	8.04	1.88
Merged-chr3-146685484-1	chr3	146685384	146685584	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-34167.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.25	2.77	1.14	2.82	6.14	5.33	6.98	8.78	5.51	8.54	8.54	5.01
Merged-chr16-85800814-1	chr16	85800714	85800914	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2299.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	3.23	1.51	4.56	2.41	20.05	18.5	9.63	25.07	4.52	2.51	1.0	0.94
Merged-chr14-66225155-3	chr14	66225063	66225263	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11339.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.67	16.1	11.98	10.05	15.55	24.15	12.29	24.98	17.7	27.11	21.61	12.84
Merged-chr19-21276776-1	chr19	21276676	21276876	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009551, intron 2 of 5)	intron (NM_009551, intron 2 of 5)	4498.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	5.65	1.26	0.57	2.41	2.45	3.14	9.97	5.92	5.11	3.51	1.51	3.76
Merged-chr12-112620766-3	chr12	112620628	112620828	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	681.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	5.25	9.31	9.13	2.41	9.82	11.6	8.97	8.19	12.78	5.52	8.04	5.64
Merged-chr12-80105382-1	chr12	80105282	80105482	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7631.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.67	10.06	0.0	3.22	4.5	6.9	0.66	0.7	0.39	5.52	0.5	0.31
Merged-chr12-86265788-1	chr12	86265688	86265888	+	884.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027405, intron 6 of 9)	RMER10B|LTR|ERVL	23930.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	2.02	5.53	6.85	2.82	4.5	2.2	2.66	3.48	11.8	6.53	14.57	2.82
Merged-chr12-64918322-1	chr12	64918222	64918422	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025605, intron 1 of 4)	CpG	411.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	14.94	7.8	14.83	5.63	13.5	8.47	8.64	10.96	12.59	10.04	17.59	8.46
Merged-chr8-11554875-2	chr8	11554774	11554974	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-888.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	8.48	9.31	17.11	6.03	9.82	6.27	8.97	15.39	12.19	14.56	19.09	13.16
Merged-chr3-51226890-2	chr3	51226769	51226969	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	2422.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.85	5.79	6.28	7.64	11.86	6.27	13.29	13.71	6.29	8.54	17.08	12.22
Merged-chr2-84562377-2	chr2	84562279	84562479	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-55506.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	13.33	15.34	17.68	12.07	10.64	5.96	15.61	10.49	5.7	2.51	6.03	5.01
Merged-chr6-87027208-2	chr6	87027112	87027312	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020045, intron 7 of 7)	intron (NM_020045, intron 7 of 7)	-15634.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	2.83	4.02	7.42	5.23	4.91	13.17	18.27	13.65	14.55	5.52	7.03	8.77
Merged-chr16-50061918-3	chr16	50061829	50062029	+	883.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	L1_Mus2|LINE|L1	10923.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	12.92	7.55	13.12	6.03	11.86	16.93	6.31	9.22	11.6	7.53	21.61	13.47
Merged-chr4-129810409-3	chr4	129810314	129810514	+	883.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10065.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	11.31	6.29	10.27	4.02	13.5	19.44	10.96	16.63	18.49	10.54	21.1	16.92
Merged-chr7-101858597-3	chr7	101858489	101858689	+	883.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008034, exon 7 of 7)	exon (NM_008034, exon 7 of 7)	-1399.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	16.96	11.82	9.13	12.47	29.86	22.26	11.96	15.45	20.85	17.07	29.14	7.83
Merged-chr10-8795536-3	chr10	8795425	8795625	+	883.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	90545.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	14.94	9.31	10.84	16.09	9.41	10.03	6.31	9.03	14.36	6.03	19.6	6.27
Merged-chr15-97195899-3	chr15	97195805	97196005	+	883.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28661.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	8.08	20.37	11.41	10.46	22.5	23.83	11.29	20.83	34.03	31.13	28.64	9.08
Merged-chr4-16198932-3	chr4	16198824	16199024	+	883.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	34814.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	14.54	15.85	17.11	3.22	12.27	12.54	4.98	1.77	33.04	12.55	15.58	3.45
Merged-chr2-31135743-3	chr2	31135628	31135828	+	883.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	6280.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	18.98	11.07	13.69	10.86	22.5	26.97	13.62	12.5	16.92	17.07	12.06	4.07
Merged-chr12-83972323-3	chr12	83972231	83972431	+	883.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15530.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	19.38	8.05	9.7	12.47	15.55	25.71	9.3	16.65	20.46	18.58	16.58	13.78
Merged-chr5-121835553-3	chr5	121835394	121835594	+	883.8722529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	610.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	7.27	7.55	5.7	6.84	8.59	10.35	20.59	9.95	11.41	8.03	13.06	9.4
Merged-chr8-112927047-3	chr8	112926935	112927135	+	883.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140227.0	NR_033584	791378.0	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	-	predicted gene 10280	ncRNA	13.33	15.34	19.97	33.78	7.36	10.66	8.3	23.64	24.0	14.06	20.6	26.31
Merged-chr15-73147166-3	chr15	73147032	73147232	+	883.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37815.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	12.52	5.79	11.98	12.47	9.41	9.41	7.31	10.57	19.47	7.53	10.55	6.89
Merged-chr10-44686857-3	chr10	44686762	44686962	+	883.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-228114.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	14.13	10.31	10.84	19.31	10.64	8.78	11.29	19.57	16.92	12.55	27.13	10.96
Merged-chr5-29841035-3	chr5	29840930	29841130	+	883.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105094.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	15.34	11.82	10.84	9.65	13.91	19.13	18.93	13.77	16.52	8.03	15.58	10.65
Merged-chr3-27213142-2	chr3	27213056	27213256	+	883.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30152.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	2.02	3.02	2.85	2.41	9.82	4.08	14.62	13.09	9.64	8.54	20.1	15.04
Merged-chr2-102873586-1	chr2	102873486	102873686	+	883.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	28079.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.65	6.54	4.56	1.61	10.23	7.21	14.62	15.9	6.1	8.54	6.53	1.57
Merged-chr4-128971260-3	chr4	128971159	128971359	+	883.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8804.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	10.5	9.31	0.57	7.24	12.68	11.92	5.31	9.39	16.52	19.08	14.07	13.16
Merged-chr2-60902735-3	chr2	60902613	60902813	+	883.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-21275.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.44	7.04	13.12	8.04	10.64	13.8	7.64	16.68	18.29	14.06	22.11	12.84
Merged-chr10-111837020-3	chr10	111836936	111837136	+	883.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37340.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	4.85	5.28	19.4	8.04	9.0	3.45	7.97	13.88	10.42	16.57	20.6	5.95
Merged-chr4-109505077-2	chr4	109504977	109505177	+	883.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199090)	TTS (NM_001199090)	26127.0	NM_001199090	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	10.09	4.02	7.99	7.24	6.55	12.86	6.31	11.19	17.11	11.05	20.1	14.72
Merged-chr17-79786869-3	chr17	79786775	79786975	+	883.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-71834.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	12.92	8.3	12.55	5.63	11.45	21.01	15.61	17.86	15.74	4.52	17.08	3.76
Merged-chr3-79438466-3	chr3	79438381	79438581	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	93105.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	17.36	6.54	18.25	18.5	21.68	26.03	16.94	29.07	20.85	12.05	17.59	19.42
Merged-chr5-117483106-3	chr5	117483022	117483222	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	69120.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	9.29	9.81	38.79	27.75	18.82	15.05	25.58	27.14	11.41	6.53	12.56	10.96
Merged-chr3-88719175-3	chr3	88719016	88719216	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	2262.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	4.44	10.56	10.27	11.66	6.55	12.54	13.29	9.28	14.55	8.03	21.61	11.59
Merged-chr2-72170719-3	chr2	72170604	72170804	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 3 of 26)	ORR1B2|LTR|ERVL-MaLR	-114933.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	10.5	4.28	15.97	10.46	20.05	34.18	17.27	20.44	18.88	10.54	31.66	18.17
Merged-chr17-36903761-1	chr17	36903661	36903861	+	883.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146077, intron 3 of 7)	ID_B1|SINE|B4	5631.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	2.42	2.01	5.7	6.03	7.36	13.48	5.98	15.9	6.69	7.03	7.54	4.39
Merged-chr1-177110800-3	chr1	177110706	177110906	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137961.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	18.17	7.8	18.25	18.9	6.55	12.23	15.61	24.73	10.82	4.52	16.58	12.53
Merged-chr10-118581531-3	chr10	118581425	118581625	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25000.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	7.27	8.55	27.38	17.7	9.41	6.27	16.94	31.37	7.08	13.56	20.1	13.16
Merged-chrX-142697756-3	chrX	142697650	142697850	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	16024.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	18.17	12.07	24.53	25.34	11.05	8.78	21.92	25.93	9.83	7.53	16.58	10.96
Merged-chr2-167942984-3	chr2	167942899	167943099	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10672.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	11.31	12.83	6.85	14.48	13.5	16.62	12.95	12.2	10.82	16.07	14.07	7.83
Merged-chr17-63896054-2	chr17	63895961	63896161	+	883.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001286415, exon 2 of 18)	5' UTR (NM_001286415, exon 2 of 18)	17995.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.85	2.52	8.56	4.02	11.86	11.29	14.95	21.81	8.65	20.08	17.08	5.33
Merged-chrX-142361809-3	chrX	142361701	142361901	+	883.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	28734.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	15.34	7.8	27.38	13.27	19.23	23.52	11.96	13.04	18.49	16.57	17.08	11.28
Merged-chr5-21202299-3	chr5	21202182	21202382	+	883.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	16015.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	21.0	6.79	15.97	22.12	30.27	20.38	28.23	24.42	18.1	10.04	14.57	20.36
Merged-chr3-95135850-3	chr3	95135761	95135961	+	883.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1773.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	16.15	8.3	15.4	6.84	14.32	18.81	5.65	12.56	19.87	15.06	19.6	11.28
Merged-chr2-166717442-3	chr2	166717221	166717421	+	883.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3489.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.85	5.79	6.28	1.61	6.95	2.82	2.66	4.82	4.72	4.52	11.05	7.83
Merged-chr6-137471251-3	chr6	137471124	137471324	+	883.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48671.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	16.96	14.09	30.23	28.15	8.59	4.7	18.93	11.66	8.26	4.02	9.04	9.4
Merged-chr10-82866519-3	chr10	82866426	82866626	+	883.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-100.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	12.11	7.04	11.98	8.45	7.77	10.98	13.62	18.2	19.28	14.06	41.2	19.42
Merged-chr6-136980523-2	chr6	136980416	136980616	+	883.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25993.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.44	4.02	2.28	11.26	6.55	7.84	6.98	11.94	15.54	18.08	16.58	15.04
Merged-chr11-11762234-3	chr11	11762133	11762333	+	883.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	46729.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	11.71	4.53	14.26	5.23	10.64	16.62	8.97	9.36	17.9	26.61	11.56	6.27
Merged-chrX-150588311-4	chrX	150588278	150588478	+	883.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029943)	promoter-TSS (NM_029943)	-223.0	NM_029943	77622.0	Mm.440275	NM_029943	ENSMUSG00000025269	Apex2	C430040P13Rik|ape2	apurinic/apyrimidinic endonuclease 2	protein-coding	5.25	1.26	2.85	2.41	11.05	3.45	2.99	7.12	5.51	4.52	4.52	8.46
Merged-chr5-144772220-2	chr5	144772121	144772321	+	883.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081362, intron 3 of 70)	intron (NM_001081362, intron 3 of 70)	3429.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	6.06	6.04	4.56	5.23	13.09	15.68	9.3	12.73	12.98	13.05	19.09	7.21
Merged-chr1-64534108-3	chr1	64534006	64534206	+	883.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	1302.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	9.69	10.82	15.97	6.44	9.0	9.09	4.32	9.62	17.31	15.57	14.07	5.01
Merged-chr7-49754954-1	chr7	49754854	49755054	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4152.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	6.46	4.53	9.13	5.63	13.5	12.86	6.98	7.71	16.92	5.02	7.54	5.01
Merged-chr15-58264800-3	chr15	58264690	58264890	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-49898.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	11.31	7.55	10.27	12.47	28.23	17.25	17.94	15.53	28.91	28.62	28.64	22.24
Merged-chr14-78924826-2	chr14	78924717	78924917	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027906, intron 4 of 44)	intron (NM_027906, intron 4 of 44)	75639.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	12.11	6.79	18.25	22.52	24.55	15.68	21.26	38.92	1.97	2.01	0.5	0.31
Merged-chr2-174077301-3	chr2	174077207	174077407	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102423, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	256.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	15.75	14.09	6.85	12.47	10.23	10.98	10.3	15.79	23.21	9.04	16.58	16.6
Merged-chr6-106440028-1	chr6	106439928	106440128	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	309009.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.81	0.5	2.28	0.0	11.45	2.51	5.65	9.08	5.51	2.51	1.51	0.63
Merged-chr14-32167483-1	chr14	32167383	32167583	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	1694.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	1.62	3.52	6.85	5.63	0.82	6.27	8.97	10.43	7.87	4.02	6.03	2.19
Merged-chr7-101108834-1	chr7	101108734	101108934	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	59.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	19.79	21.38	12.55	26.55	21.68	17.25	19.93	18.0	16.72	28.62	15.58	11.28
Merged-chr13-55858635-1	chr13	55858535	55858735	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27210.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	16.15	4.28	10.84	4.02	3.27	14.42	4.98	11.27	4.72	8.03	4.52	7.21
Merged-chr6-145767175-1	chr6	145767075	145767275	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41208.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.44	2.26	6.28	16.49	6.55	4.39	14.28	18.76	4.52	5.52	10.55	5.01
Merged-chr13-81072473-3	chr13	81072362	81072562	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	ERVB5_1-I_MM-int|LTR|ERVK	108388.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.52	10.56	14.83	16.49	11.86	11.29	15.94	24.5	22.03	9.54	16.08	11.59
Merged-chr15-17597308-3	chr15	17597193	17597393	+	883.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	772334.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.81	0.25	2.85	0.8	3.27	2.82	5.31	7.79	12.59	9.04	9.04	3.13
Merged-chr7-140956582-3	chr7	140956471	140956671	+	883.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-610.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	14.54	11.32	10.84	6.84	22.5	19.13	7.64	12.53	11.8	10.54	13.57	10.02
Merged-chr7-13037550-3	chr7	13037452	13037652	+	883.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	75.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	12.92	9.56	12.55	2.82	16.77	13.17	19.93	14.8	5.9	17.07	15.07	13.47
Merged-chr11-58282709-3	chr11	58282617	58282817	+	883.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24352.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	3.23	15.09	18.83	11.66	9.82	13.48	9.3	3.79	21.83	15.57	15.58	13.16
Merged-chrX-75129742-3	chrX	75129640	75129840	+	883.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008621, intron 1 of 11)	intron (NM_008621, intron 1 of 11)	1276.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	21.0	14.84	11.41	13.27	20.86	19.44	5.31	21.0	22.03	19.08	29.65	9.4
Merged-chr10-4174964-2	chr10	4174866	4175066	+	883.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38154.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	19.79	6.54	11.98	14.48	12.27	14.42	13.29	21.56	0.39	0.0	2.01	1.57
Merged-chr1-155087104-1	chr1	155087004	155087204	+	883.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3840.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.06	2.52	17.11	9.65	14.73	12.54	6.64	12.95	8.65	3.51	11.56	13.78
Merged-chr2-173738312-2	chr2	173738214	173738414	+	883.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	743.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	3.63	4.78	2.85	8.85	7.77	4.08	7.64	12.08	14.55	13.56	10.55	16.92
Merged-chr3-21986374-3	chr3	21986290	21986490	+	883.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90262.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	14.13	19.62	15.4	6.84	14.73	16.62	9.97	17.02	12.19	5.52	14.57	9.08
Merged-chr1-165734497-3	chr1	165734390	165734590	+	883.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-26396.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	12.92	9.81	13.12	9.25	22.09	9.72	12.62	25.46	14.75	14.06	25.63	15.35
Merged-chr11-98203767-2	chr11	98203676	98203876	+	883.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	471.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	14.13	9.31	7.42	10.86	7.36	10.35	3.65	12.39	22.03	17.07	6.03	11.28
Merged-chr15-58595128-3	chr15	58595073	58595273	+	883.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	179705.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.06	8.3	14.26	12.47	10.23	4.7	10.96	7.71	3.34	9.04	12.06	3.45
Merged-chr6-116671400-4	chr6	116671282	116671482	+	883.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	2454.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	10.5	16.6	9.7	3.62	4.5	18.19	2.66	4.71	16.13	17.57	12.56	12.84
Merged-chr4-135855264-1	chr4	135855164	135855364	+	883.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-807.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	4.44	4.02	0.57	2.01	10.23	11.6	1.66	7.74	7.28	3.01	7.03	5.95
Merged-chr8-70426725-3	chr8	70426633	70426833	+	883.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	12840.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	18.17	11.32	12.55	12.47	2.45	8.78	11.96	11.64	6.1	7.03	21.1	15.35
Merged-chr12-86883227-6	chr12	86883201	86883401	+	883.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	1513.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.44	10.31	11.98	9.25	4.09	12.54	4.32	9.0	6.69	7.03	9.55	14.1
Merged-chr12-85486952-3	chr12	85486877	85487077	+	883.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13087.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	11.71	4.78	15.4	11.26	9.0	5.96	5.98	7.35	10.03	11.55	18.59	10.34
Merged-chr10-88622296-3	chr10	88622196	88622396	+	883.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17144.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	8.48	12.07	21.68	12.87	14.32	6.9	16.61	12.03	11.8	18.58	14.57	16.6
Merged-chr6-31318665-2	chr6	31318554	31318754	+	883.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	80119.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	6.46	5.03	8.56	4.02	7.77	11.6	12.62	11.61	14.75	4.02	14.07	3.76
Merged-chr11-84855491-2	chr11	84855385	84855585	+	883.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153144, intron 5 of 13)	intron (NM_153144, intron 5 of 13)	-14520.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	7.67	4.02	11.41	5.23	8.18	10.66	3.65	8.61	16.52	7.03	7.03	11.9
Merged-chr12-99739167-3	chr12	99739078	99739278	+	883.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-111204.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	11.71	10.06	21.11	10.05	12.68	16.62	11.63	12.17	49.96	49.21	50.75	36.34
Merged-chr17-79715762-3	chr17	79715640	79715840	+	883.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009994)	promoter-TSS (NM_009994)	-699.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	10.5	9.31	15.97	13.27	12.27	17.25	7.64	23.05	21.83	10.04	14.07	6.89
Merged-chr4-32560470-3	chr4	32560395	32560595	+	883.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11167.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.08	8.05	16.54	12.47	7.77	6.9	16.28	26.61	6.69	4.02	23.62	10.02
Merged-chr11-78247950-3	chr11	78247859	78248059	+	883.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359106, intron 1 of 3)	RLTR12E|LTR|ERVK	2208.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	20.19	15.09	14.26	18.1	20.86	21.01	5.65	8.78	31.86	17.07	25.63	25.37
Merged-chr8-26689359-2	chr8	26689264	26689464	+	883.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135059.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.42	5.28	11.41	4.02	8.59	11.29	5.65	10.63	11.8	16.07	24.12	12.22
Merged-chr8-122464062-3	chr8	122463966	122464166	+	883.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3374.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	22.21	11.57	11.98	1.61	19.23	23.2	4.98	10.91	9.44	18.58	21.61	13.47
Merged-chr12-101740698-3	chr12	101740590	101740790	+	883.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-22167.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	10.09	3.52	1.14	14.88	5.32	3.76	7.64	9.64	9.83	9.54	12.56	9.71
Merged-chr17-34118385-3	chr17	34118297	34118497	+	883.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 2 of 12)	CpG	1503.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	15.75	17.36	5.13	2.41	7.77	19.13	8.3	6.62	18.29	28.12	14.07	5.95
Merged-chr17-8838438-3	chr17	8838334	8838534	+	883.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-11551.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.04	14.09	21.68	14.08	15.14	22.89	11.29	15.31	13.96	11.05	16.08	1.57
Merged-chr11-119677339-2	chr11	119677230	119677430	+	883.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74425.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	6.06	5.28	7.99	4.02	8.59	9.41	7.97	12.48	18.29	13.05	17.08	10.02
Merged-chr2-34914123-4	chr2	34914000	34914200	+	883.162476	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-124.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	13.33	6.79	10.84	12.87	7.36	8.15	4.65	9.22	6.69	12.05	2.01	8.46
Merged-chr10-75853639-3	chr10	75853520	75853720	+	883.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6630.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	13.73	10.06	11.41	14.08	13.09	16.31	14.62	18.84	29.5	25.11	29.14	16.6
Merged-chr11-100360410-3	chr11	100360315	100360515	+	883.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4274.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	22.61	8.55	6.85	14.48	10.64	12.86	9.97	16.21	16.52	27.11	33.67	12.84
Merged-chr2-160348290-3	chr2	160348212	160348412	+	883.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18753.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.06	9.31	32.52	8.45	6.55	10.03	11.29	14.89	11.8	18.58	23.62	14.41
Merged-chr10-34532794-3	chr10	34532683	34532883	+	883.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358769, intron 2 of 8)	MTD|LTR|ERVL-MaLR	49383.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	19.38	12.07	11.41	5.63	11.86	15.99	5.65	10.21	17.9	16.07	14.07	10.34
Merged-chr7-98872111-2	chr7	98872005	98872205	+	883.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33260.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.48	9.56	19.4	13.67	6.55	12.86	12.29	10.74	4.13	3.01	3.52	4.7
Merged-chr8-95141198-3	chr8	95141089	95141289	+	883.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1351.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	8.48	6.54	9.13	6.44	25.77	12.86	7.31	17.55	14.55	19.08	19.6	10.65
Merged-chr1-59755487-3	chr1	59755387	59755587	+	883.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8792.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	7.27	13.33	10.84	8.85	22.09	30.73	19.93	12.98	22.03	15.57	27.13	10.34
Merged-chr4-55591679-3	chr4	55591554	55591754	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	-59179.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.85	7.8	10.27	4.42	6.95	19.13	11.29	14.3	23.8	10.04	24.62	12.84
Merged-chr6-134705903-3	chr6	134705794	134705994	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	64954.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	7.27	10.06	12.55	14.88	5.73	8.78	9.3	12.31	16.52	23.6	20.1	10.02
Merged-chr2-181239983-1	chr2	181239883	181240083	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	2044.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	2.42	4.53	5.13	4.83	1.64	7.21	0.0	3.08	11.01	4.52	23.11	10.65
Merged-chrUn_JH584304-64262-1	chrUn_JH584304	64162	64362	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4573.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.03	24.6	14.57	27.88
Merged-chr9-115777315-1	chr9	115777215	115777415	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132140.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	7.27	5.28	1.14	6.84	2.45	2.82	3.99	3.5	22.23	16.07	28.64	8.77
Merged-chr2-172378526-1	chr2	172378426	172378626	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024199, intron 5 of 5)	intron (NM_024199, intron 5 of 5)	7523.0	NM_024199	67337.0	Mm.26944	NM_024199	ENSMUSG00000027498	Cstf1	1700057K18Rik|AI788832	cleavage stimulation factor, 3' pre-RNA, subunit 1	protein-coding	5.25	5.03	4.56	4.02	5.32	2.82	3.99	8.38	4.52	4.02	12.06	4.07
Merged-chr11-70466909-2	chr11	70466833	70467033	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6949.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	9.69	5.79	7.42	2.82	0.0	9.72	6.31	10.54	11.21	7.53	21.1	5.95
Merged-chr9-44655339-1	chr9	44655239	44655439	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17894.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	5.65	2.26	2.28	2.82	7.77	9.09	6.64	10.6	5.11	3.01	3.52	2.82
Merged-chr3-129437874-1	chr3	129437774	129437974	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4201.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	10.09	2.77	2.28	3.22	6.55	3.45	6.64	7.37	6.88	1.51	4.02	3.45
Merged-chr5-5334130-3	chr5	5334036	5334236	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	ORR1D2|LTR|ERVL-MaLR	46115.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.27	11.07	21.11	8.85	13.5	11.92	9.97	9.62	16.52	18.08	25.63	20.05
Merged-chr15-8569288-1	chr15	8569188	8569388	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-124825.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.65	3.77	3.99	6.03	9.41	0.63	11.96	4.15	2.95	6.53	5.02	6.27
Merged-chr15-74992924-1	chr15	74992824	74993024	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5107.0	NM_001271417	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	2.42	8.55	1.14	0.8	5.73	6.9	1.66	3.53	14.95	14.06	8.54	4.39
Merged-chr15-53113996-1	chr15	53113896	53114096	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	232187.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	1.62	2.52	2.28	8.85	0.82	3.45	5.31	7.46	3.15	3.51	8.54	4.07
Merged-chr9-48493425-1	chr9	48493325	48493525	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001326356, exon 3 of 4)	exon (NM_001326356, exon 3 of 4)	1905.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	6.86	10.82	11.41	0.8	8.18	14.11	3.65	0.84	7.28	12.55	2.01	2.19
Merged-chr9-43284379-1	chr9	43284279	43284479	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24500.0	NM_001243261	235302.0	Mm.135745	NM_001243261		D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	4.44	7.8	6.85	6.84	2.05	3.14	4.32	5.5	4.52	2.01	8.04	2.51
Merged-chr5-146720094-1	chr5	146719994	146720194	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	74862.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	9.69	11.32	1.14	2.82	2.86	6.9	0.0	2.97	4.13	4.52	4.52	1.88
Merged-chr8-27253857-3	chr8	27253749	27253949	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6478.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	10.5	10.82	19.4	14.08	19.23	6.9	5.98	14.78	26.75	21.09	21.1	16.29
Merged-chrX-38459913-2	chrX	38459816	38460016	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3456.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	6.46	4.53	10.27	1.21	14.32	15.05	3.99	11.61	13.57	6.03	13.57	3.45
Merged-chr10-80054717-3	chr10	80054591	80054791	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110342, intron 3 of 6)	intron (NR_110342, intron 3 of 6)	672.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	11.31	10.31	15.97	8.85	13.09	20.7	18.93	7.68	25.57	21.59	27.64	10.34
Merged-chr7-102229856-3	chr7	102229758	102229958	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	6830.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	11.31	14.84	9.7	8.04	14.32	30.1	21.92	15.9	24.59	18.58	16.08	14.1
Merged-chr6-57521043-3	chr6	57520947	57521147	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 3 of 6)	intron (NM_175523, intron 3 of 6)	14379.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	16.56	15.85	32.52	14.48	7.77	11.6	9.97	15.28	12.59	11.55	25.12	8.77
Merged-chr11-3194783-3	chr11	3194687	3194887	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1324.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	10.5	13.08	15.4	9.65	15.14	3.14	15.94	10.32	8.26	19.58	12.06	17.23
Merged-chr14-118947343-3	chr14	118947236	118947436	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	PB1D10|SINE|Alu	9404.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	14.54	10.56	14.26	14.08	19.23	15.05	10.3	15.06	17.31	16.07	17.59	10.96
Merged-chr2-129328453-2	chr2	129328350	129328550	+	882.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-18478.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.06	4.78	7.99	8.04	9.0	24.46	9.97	12.08	19.08	13.56	13.57	4.07
Merged-chr9-78110321-3	chr9	78110234	78110434	+	882.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163780, intron 1 of 13)	intron (NM_001163780, intron 1 of 13)	1142.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	14.13	13.33	18.25	7.64	6.55	21.64	12.29	12.7	19.28	22.09	21.1	12.84
Merged-chr10-108157972-3	chr10	108157860	108158060	+	882.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-4440.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	7.27	9.56	6.85	10.86	10.23	13.17	5.31	15.08	22.03	27.11	10.55	10.02
Merged-chr11-4270977-2	chr11	4270876	4271076	+	882.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008501, exon 4 of 4)	3' UTR (NM_008501, exon 4 of 4)	4180.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	21.0	15.34	14.83	12.87	9.82	6.27	6.31	7.85	12.0	6.03	6.53	1.88
Merged-chr8-111726320-3	chr8	111726223	111726423	+	882.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	5813.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	18.17	22.13	11.98	7.24	16.77	19.13	8.64	4.74	16.13	15.57	13.06	5.33
Merged-chr6-149132535-3	chr6	149132447	149132647	+	882.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8966.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	10.5	11.57	13.69	12.87	9.41	11.29	4.98	15.06	23.8	8.54	20.1	8.77
Merged-chr17-70846411-3	chr17	70846305	70846505	+	882.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164077, exon 1 of 2)	5' UTR (NM_001164077, exon 1 of 2)	372.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	14.54	15.59	11.41	5.63	9.82	27.28	10.63	9.67	23.8	23.6	20.1	10.34
Merged-chr17-26584607-3	chr17	26584491	26584691	+	882.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23079.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	11.31	7.04	14.83	11.66	18.41	12.23	10.63	29.22	19.28	31.13	22.11	20.36
Merged-chr3-86842784-2	chr3	86842677	86842877	+	882.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	78107.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	11.31	12.32	7.99	4.02	9.82	8.15	5.98	6.62	2.36	2.01	2.01	0.0
Merged-chr2-124642376-3	chr2	124642279	124642479	+	882.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-11202.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	12.11	9.81	7.42	10.46	21.27	11.92	12.95	25.15	26.16	17.07	14.57	29.45
Merged-chr15-98181507-2	chr15	98181394	98181594	+	882.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13688.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	7.27	3.77	3.42	6.03	18.0	29.48	11.63	22.26	17.9	8.03	21.1	7.21
Merged-chr13-23401817-3	chr13	23401729	23401929	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	22037.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	35.13	15.09	10.84	18.9	16.36	21.32	13.29	24.42	12.98	22.59	15.58	5.01
Merged-chr17-31067263-3	chr17	31067135	31067335	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	9541.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.67	12.83	15.4	3.62	24.96	21.64	12.95	16.74	9.05	18.08	10.55	6.58
Merged-chr2-35729685-3	chr2	35729575	35729775	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001114125, exon 17 of 17)	3' UTR (NM_001114125, exon 17 of 17)	32943.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	14.13	6.04	8.56	13.27	10.23	12.23	12.62	18.7	13.18	7.53	22.11	11.28
Merged-chr8-105331758-1	chr8	105331658	105331858	+	882.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177699, exon 15 of 22)	exon (NM_177699, exon 15 of 22)	5394.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	4.85	7.8	5.13	6.44	11.05	12.54	11.96	14.07	13.18	6.03	8.54	3.45
Merged-chr2-50813943-3	chr2	50813867	50814067	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95717.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	6.86	5.53	13.12	27.75	17.18	17.56	19.93	35.66	31.67	18.58	47.23	22.24
Merged-chr19-21785277-3	chr19	21785199	21785399	+	882.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	6959.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	9.69	9.56	22.82	20.91	9.41	12.86	10.96	14.07	12.39	10.54	18.59	10.34
Merged-chr7-101296844-3	chr7	101296758	101296958	+	882.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001111111, exon 5 of 18)	exon (NM_001111111, exon 5 of 18)	5230.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	16.56	20.63	14.83	18.1	10.23	18.19	6.64	12.42	18.1	15.06	13.06	10.65
Merged-chr7-13302966-3	chr7	13302864	13303064	+	882.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083188, intron 19 of 28)	intron (NM_001083188, intron 19 of 28)	-22703.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	6.46	3.52	15.97	24.53	10.23	3.14	12.29	17.86	11.21	4.52	17.59	10.34
Merged-chr5-20256301-2	chr5	20256189	20256389	+	882.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	348771.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.44	10.31	5.7	15.28	8.18	7.21	10.3	6.87	13.96	7.03	11.05	6.58
Merged-chr13-60660075-1	chr13	60659975	60660175	+	882.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	57864.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.42	0.5	0.0	0.8	4.09	15.37	9.3	7.63	3.54	1.0	0.0	2.82
Merged-chr5-113165059-2	chr5	113164922	113165122	+	882.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1709.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	48.05	34.46	38.22	37.81	15.96	8.47	2.33	5.27	1.77	3.01	1.0	5.01
Merged-chr1-59623494-2	chr1	59623399	59623599	+	882.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	47335.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	6.46	6.79	0.0	4.83	5.32	10.66	5.98	9.98	14.16	6.03	17.59	5.01
Merged-chr6-119395773-3	chr6	119395631	119395831	+	882.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-6997.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.65	10.56	10.27	6.03	9.82	6.59	6.64	7.35	11.01	16.07	6.53	5.33
Merged-chr18-69346613-3	chr18	69346579	69346779	+	882.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 1 of 19)	intron (NM_001361128, intron 1 of 19)	519.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.63	8.3	15.97	6.03	13.91	9.41	3.99	8.21	11.21	15.06	18.09	9.08
Merged-chr7-122329797-3	chr7	122329701	122329901	+	882.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40676.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	12.52	3.77	13.69	11.26	18.41	24.46	9.97	15.2	9.05	19.08	19.6	18.48
Merged-chr9-121904575-3	chr9	121904480	121904680	+	882.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276719, intron 2 of 3)	intron (NM_001276719, intron 2 of 3)	6225.0	NM_021609	59289.0	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	19.79	26.91	38.79	28.15	9.41	12.54	7.97	9.22	12.19	5.52	17.59	7.83
Merged-chr12-116436352-3	chr12	116436266	116436466	+	882.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30964.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	9.69	8.8	13.69	18.9	12.68	18.5	23.58	17.92	25.37	34.65	41.2	21.3
Merged-chr1-33765738-3	chr1	33765634	33765834	+	882.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359275, intron 14 of 15)	intron (NM_001359275, intron 14 of 15)	-7984.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	19.38	9.81	18.25	8.85	9.0	14.74	12.95	18.87	28.91	10.04	14.07	17.23
Merged-chr7-115251765-3	chr7	115251665	115251865	+	882.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	300491.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	13.73	8.8	18.83	17.29	11.86	21.01	15.28	17.1	8.46	23.6	22.61	9.71
Merged-chr17-25801235-3	chr17	25801172	25801372	+	882.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4227.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	16.96	8.55	13.69	7.24	21.68	21.64	8.3	13.09	20.65	21.59	11.56	14.41
Merged-chr9-94734547-1	chr9	94734447	94734647	+	882.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 4 of 15)	intron (NM_177909, intron 4 of 15)	-17282.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	6.86	5.03	9.13	10.86	15.14	10.66	2.66	18.17	5.11	6.53	13.57	6.27
Merged-chr10-115806131-3	chr10	115806014	115806214	+	882.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-11170.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	8.48	1.51	14.83	13.67	28.64	19.13	11.63	27.5	13.77	4.52	14.07	7.83
Merged-chr3-14579750-1	chr3	14579650	14579850	+	882.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	1079.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	2.02	5.03	6.85	10.05	4.5	4.39	7.64	7.12	5.11	6.53	3.01	1.57
Merged-chr1-71729168-1	chr1	71729068	71729268	+	882.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75833.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	4.04	2.01	6.85	4.83	7.77	1.88	9.97	10.51	4.92	7.03	11.56	5.33
Merged-chr17-10093651-2	chr17	10093554	10093754	+	882.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	225707.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	4.04	3.02	4.56	15.28	7.36	10.35	6.64	24.93	19.67	14.56	43.72	19.11
Merged-chr3-115712975-2	chr3	115712889	115713089	+	882.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007901, exon 2 of 2)	5' UTR (NM_007901, exon 2 of 2)	2066.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	7.67	3.02	9.13	16.49	6.95	5.96	6.31	8.8	12.39	8.54	20.1	2.82
Merged-chr19-41775993-3	chr19	41775896	41776096	+	882.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	26088.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	8.48	11.07	13.69	16.09	15.14	8.47	11.29	14.47	20.65	17.07	22.11	28.51
Merged-chr12-52525069-3	chr12	52524963	52525163	+	882.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	8986.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	11.71	12.07	11.98	10.86	14.32	17.56	11.63	14.78	11.01	6.53	17.59	6.89
Merged-chr11-120580354-3	chr11	120580258	120580458	+	882.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133796, exon 2 of 6)	exon (NM_133796, exon 2 of 6)	1262.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	10.5	14.59	9.7	9.65	27.41	13.48	12.62	14.02	27.54	7.03	15.58	18.8
Merged-chr13-94301202-4	chr13	94301130	94301330	+	882.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15399.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.04	6.29	4.56	8.04	13.91	10.03	11.29	20.3	6.1	6.03	5.02	7.21
Merged-chr15-55106731-3	chr15	55106617	55106817	+	882.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045093, intron 4 of 4)	intron (NR_045093, intron 4 of 4)	-5600.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	8.88	10.82	18.25	13.27	17.18	18.5	9.63	19.21	17.51	18.08	29.14	9.08
Merged-chr5-67427732-4	chr5	67427589	67427789	+	882.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164806, exon 1 of 5)	5' UTR (NM_001164806, exon 1 of 5)	110.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	1.62	6.54	5.13	2.82	8.18	6.9	11.29	11.83	10.23	11.05	15.58	5.95
Merged-chr5-99364700-1	chr5	99364600	99364800	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111773.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.25	2.52	5.7	12.47	14.73	8.78	12.62	14.47	7.08	5.02	7.03	5.95
Merged-chr19-46340962-3	chr19	46340856	46341056	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1806.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	17.77	11.32	28.52	13.67	11.45	13.17	13.29	10.01	27.14	11.05	13.06	10.34
Merged-chr11-115071120-2	chr11	115071026	115071226	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9087.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	15.34	16.35	11.41	12.87	4.91	6.9	1.66	9.93	10.42	5.52	6.03	3.13
Merged-chr11-49997426-1	chr11	49997326	49997526	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27905.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.04	4.28	5.7	8.04	16.36	4.08	4.32	8.36	13.57	7.53	9.04	6.89
Merged-chr5-36830131-3	chr5	36830019	36830219	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008550, intron 1 of 18)	intron (NM_008550, intron 1 of 18)	530.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	4.04	10.56	21.11	2.41	8.59	11.29	11.29	11.5	9.05	10.04	23.62	9.08
Merged-chr7-81121255-2	chr7	81121157	81121357	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004184, intron 4 of 17)	intron (NM_001004184, intron 4 of 17)	6458.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	5.65	13.33	5.7	11.66	2.45	5.02	9.3	11.05	6.88	3.01	19.6	9.4
Merged-chr2-45346556-2	chr2	45346466	45346666	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-229124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.4	7.36	6.9	3.65	7.18	12.98	15.57	17.08	19.42
Merged-chr5-99365353-2	chr5	99365219	99365419	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-112392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.48	5.03	2.85	4.83	14.73	20.38	19.93	10.57	20.26	4.52	11.56	6.27
Merged-chr9-36916591-1	chr9	36916491	36916691	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 7 of 12)	intron (NM_001029838, intron 7 of 12)	83017.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	3.23	5.79	6.85	8.45	2.45	8.15	9.63	7.63	8.85	3.01	2.01	3.45
Merged-chr11-55240783-3	chr11	55240690	55240890	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36450.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	13.33	10.56	19.97	18.5	13.91	17.25	12.95	13.21	12.39	9.04	15.58	9.4
Merged-chr7-27332797-3	chr7	27332694	27332894	+	882.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	854.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	18.17	9.31	6.28	11.26	13.5	13.48	6.31	7.6	18.69	18.08	21.61	10.65
Merged-chr3-69127768-3	chr3	69127673	69127873	+	882.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-681.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	14.54	8.8	3.42	7.64	12.68	12.54	6.64	9.0	10.03	13.56	11.56	12.53
Merged-chr3-10273355-3	chr3	10273257	10273457	+	882.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	-19105.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	8.08	2.52	22.25	22.52	17.18	9.41	13.95	28.43	10.23	15.57	27.13	12.84
Merged-chr4-3529907-2	chr4	3529800	3530000	+	882.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7190.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	5.25	2.77	14.26	6.03	12.68	15.37	7.31	10.96	15.93	12.05	26.13	5.33
Merged-chr2-129083698-3	chr2	129083601	129083801	+	882.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-17295.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	15.34	18.61	10.27	8.04	7.77	32.61	6.98	21.31	19.47	16.57	9.55	11.9
Merged-chr10-67582110-3	chr10	67582016	67582216	+	882.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10157.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	7.27	4.78	11.41	18.9	7.36	17.25	33.55	25.85	27.73	9.54	19.09	7.83
Merged-chr10-83095032-3	chr10	83094931	83095131	+	882.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	MIRb|SINE|MIR	109534.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	18.17	24.4	26.24	18.9	13.91	26.03	16.61	17.83	10.42	7.03	12.06	9.08
Merged-chr11-82041900-4	chr11	82041808	82042008	+	882.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-3804.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	12.52	10.82	10.27	6.44	19.23	11.6	9.63	15.39	19.87	22.09	11.56	10.34
Merged-chr4-83303679-3	chr4	83303552	83303752	+	882.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	20537.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	13.33	10.31	11.41	18.9	9.41	15.37	10.3	15.62	24.0	9.04	30.15	7.83
Merged-chr9-115805466-3	chr9	115805377	115805577	+	882.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103978.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	22.61	8.55	22.25	30.97	11.45	5.33	11.96	16.29	12.98	11.55	16.58	12.84
Merged-chr1-36303591-3	chr1	36303491	36303691	+	882.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4142.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	9.69	8.8	18.83	7.64	22.09	22.26	11.63	15.81	18.88	22.09	15.58	12.53
Merged-chr4-9027992-3	chr4	9027897	9028097	+	882.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-241296.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	8.88	10.56	6.28	7.24	11.86	15.37	9.97	15.06	14.95	16.07	15.58	13.47
Merged-chr15-59480783-1	chr15	59480683	59480883	+	882.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106585.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.04	1.26	3.99	0.8	13.5	16.31	10.63	7.71	2.16	3.51	4.52	3.13
Merged-chr13-9834381-3	chr13	9834274	9834474	+	882.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_T|LINE|L1	-69053.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	44.01	68.92	28.52	54.7	14.73	19.44	13.29	0.0	11.6	16.07	15.07	29.45
Merged-chr3-152262169-3	chr3	152262073	152262273	+	882.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	3622.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	14.13	8.3	17.68	21.72	20.86	14.74	14.28	23.55	20.46	9.54	15.07	9.4
Merged-chr11-8661017-3	chr11	8660981	8661181	+	882.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	B1F|SINE|Alu	3454.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	10.5	11.57	6.85	6.44	11.45	8.15	10.63	19.29	9.24	8.54	14.57	7.21
Merged-chr10-77566868-3	chr10	77566775	77566975	+	882.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14780.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	12.11	10.06	3.99	6.44	6.14	19.76	5.31	5.58	24.78	17.57	8.54	14.41
Merged-chr11-57681855-1	chr11	57681755	57681955	+	882.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-32361.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	1.62	2.01	0.57	4.42	9.41	7.21	8.97	5.41	2.36	7.03	4.02	3.13
Merged-chr3-138521085-3	chr3	138520990	138521190	+	882.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5101.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	20.19	9.31	7.42	10.05	14.73	16.62	14.28	18.9	31.47	36.15	25.12	16.6
Merged-chr8-41284631-3	chr8	41284574	41284774	+	882.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 16 of 37)	RCHARR1|DNA|hAT-Charlie	44915.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	11.31	7.55	8.56	10.86	11.05	23.52	16.28	17.33	34.42	35.15	50.25	22.24
Merged-chr14-75065494-3	chr14	75065405	75065605	+	882.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	49478.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	9.29	12.07	17.11	3.22	18.82	11.92	11.63	15.31	13.77	13.05	11.05	14.1
Merged-chr16-21842320-3	chr16	21842229	21842429	+	882.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47982.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	6.46	8.55	18.83	12.87	16.77	8.15	9.63	11.1	16.72	13.56	9.55	14.72
Merged-chr3-81050037-2	chr3	81049943	81050143	+	882.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	13627.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	14.13	11.07	11.98	7.24	31.09	34.49	28.23	36.56	6.49	6.53	14.07	1.88
Merged-chr5-122274942-3	chr5	122274824	122275024	+	882.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9474.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	9.29	7.55	2.85	6.44	18.41	28.22	7.64	19.96	21.05	25.61	17.59	10.65
Merged-chr13-58453220-3	chr13	58453105	58453305	+	882.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49862.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	10.09	13.33	8.56	10.05	8.18	21.64	5.65	10.85	13.37	17.57	21.1	13.47
Merged-chr17-74020714-3	chr17	74020632	74020832	+	882.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27184.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	14.54	8.8	6.85	9.25	9.41	10.03	3.99	9.64	14.36	12.55	10.55	12.84
Merged-chr11-49243409-3	chr11	49243320	49243520	+	882.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-771.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	10.5	6.29	15.4	8.85	22.91	17.56	7.97	13.99	27.14	19.08	18.09	12.53
Merged-chr9-59542694-3	chr9	59542570	59542770	+	882.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	3130.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	11.31	12.07	3.42	4.83	8.59	4.39	7.97	6.45	16.13	10.04	12.56	10.02
Merged-chr12-80835176-4	chr12	80835099	80835299	+	882.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	Lx5|LINE|L1	44667.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	8.88	8.8	6.28	3.22	13.91	10.03	7.64	8.75	16.13	9.54	10.55	12.53
Merged-chr3-89807334-2	chr3	89807228	89807428	+	882.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24042.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	4.04	6.04	7.99	8.45	9.41	6.59	6.98	11.66	5.9	4.52	22.61	11.59
Merged-chr7-99164038-2	chr7	99163941	99164141	+	882.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	18672.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	15.75	12.32	17.11	15.69	7.77	10.98	11.63	9.59	6.1	3.01	8.54	6.89
Merged-chr16-25042137-2	chr16	25042048	25042248	+	882.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17491.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	8.48	5.03	7.42	6.84	12.27	10.03	14.62	11.02	12.0	20.08	9.55	4.39
Merged-chr2-167688284-3	chr2	167688200	167688400	+	882.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	-615.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	10.9	5.79	7.99	8.85	11.05	10.98	11.29	9.64	12.98	14.06	12.06	11.28
Merged-chr11-97883665-3	chr11	97883561	97883761	+	882.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081435, intron 1 of 10)	CpG	493.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	16.56	10.56	14.26	14.08	13.5	16.93	9.3	9.95	24.0	27.62	15.58	8.77
Merged-chr19-37554096-3	chr19	37553996	37554196	+	882.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	3678.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	14.54	13.83	28.52	22.52	9.82	9.41	11.63	11.5	18.88	13.05	20.1	6.89
Merged-chr14-25608319-2	chr14	25608264	25608464	+	882.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	4851.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	15.75	7.29	6.28	4.02	3.68	11.6	6.31	6.11	8.46	10.04	7.54	0.94
Merged-chr12-35317327-2	chr12	35317264	35317464	+	882.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122467.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.04	4.02	2.28	6.03	9.41	3.45	7.97	7.57	7.47	7.53	5.02	4.7
Merged-chr8-4616194-1	chr8	4616094	4616294	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	3024.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	3.63	4.53	6.85	5.23	3.68	9.72	2.66	7.57	5.11	3.01	9.55	3.45
Merged-chr4-53337778-1	chr4	53337678	53337878	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67546.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.23	4.02	0.57	3.22	6.14	7.53	7.64	14.36	3.15	2.51	4.52	2.51
Merged-chr10-24111334-1	chr10	24111234	24111434	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1800.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	4.44	4.78	1.14	4.42	3.68	5.96	5.31	7.77	5.51	3.01	15.07	7.21
Merged-chr6-52192005-3	chr6	52191941	52192141	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008265)	promoter-TSS (NM_008265)	-338.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	14.54	17.86	11.98	16.89	9.0	15.37	9.3	12.08	13.18	26.11	12.06	3.45
Merged-chr10-96732203-3	chr10	96732088	96732288	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115187.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.08	10.06	26.81	12.47	14.32	9.41	8.3	18.39	23.8	10.54	20.1	12.84
Merged-chr11-90250575-1	chr11	90250475	90250675	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	1099.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.44	2.77	1.71	0.0	4.91	3.76	3.32	3.36	7.28	2.51	3.52	2.82
Merged-chr12-98215766-1	chr12	98215666	98215866	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008079, intron 12 of 16)	intron (NM_008079, intron 12 of 16)	43693.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	1.21	3.52	3.99	4.83	1.64	2.82	6.64	6.7	1.57	1.51	3.52	4.7
Merged-chr6-113657200-2	chr6	113657106	113657306	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	18739.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.81	13.83	12.55	4.42	7.36	8.15	1.33	2.38	5.51	5.02	6.53	6.89
Merged-chr16-21331445-1	chr16	21331345	21331545	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_131983)	TTS (NR_131983)	1911.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	4.04	5.03	1.14	8.04	4.91	0.63	7.31	8.66	6.29	1.51	4.52	4.39
Merged-chr2-6476914-2	chr2	6476812	6477012	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124176.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.04	2.01	8.56	4.83	3.27	4.39	6.64	15.11	7.28	11.05	23.62	15.35
Merged-chr1-93165587-2	chr1	93165490	93165690	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-2833.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	11.31	16.35	13.69	6.44	13.5	21.95	4.65	11.44	6.49	6.53	23.62	3.45
Merged-chr10-110919169-3	chr10	110919053	110919253	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1023.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	9.29	8.05	7.99	8.45	21.68	42.96	10.3	13.37	22.42	15.06	14.07	5.01
Merged-chr17-49384466-1	chr17	49384366	49384566	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43898.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	2.42	1.26	5.7	5.63	1.64	3.45	4.65	11.86	10.03	8.54	5.53	3.13
Merged-chr17-62884438-1	chr17	62884338	62884538	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3121.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	1.62	6.54	6.85	6.44	5.73	2.2	4.98	8.02	2.75	6.53	14.07	1.88
Merged-chr2-128243861-1	chr2	128243761	128243961	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	116286.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.42	2.52	7.99	2.82	10.64	17.56	7.31	9.56	7.87	1.51	2.51	3.76
Merged-chr14-14971258-3	chr14	14971159	14971359	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 29 of 34)	intron (NM_001195229, intron 29 of 34)	150444.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.86	15.85	11.98	12.87	43.77	55.5	44.84	51.87	18.1	15.57	24.12	8.46
Merged-chr7-138845726-3	chr7	138845628	138845828	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	539.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	13.33	13.33	14.83	14.48	16.36	13.48	7.64	8.13	17.9	11.05	21.1	11.9
Merged-chr2-155541247-2	chr2	155541134	155541334	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	MIRc|SINE|MIR	15696.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.4	4.02	15.4	1.61	9.82	14.42	15.94	24.84	16.13	5.52	11.05	8.14
Merged-chr1-166349968-1	chr1	166349868	166350068	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-29199.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	8.48	3.77	7.99	7.64	5.32	3.45	7.64	9.42	6.69	15.57	10.05	5.01
Merged-chr17-51832429-1	chr17	51832329	51832529	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163632, intron 1 of 10)	CpG	218.0	NM_009122	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	2.02	3.77	7.42	7.64	5.73	3.76	3.99	9.56	4.13	7.03	3.52	3.13
Merged-chr2-85027472-1	chr2	85027372	85027572	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145526, intron 1 of 11)	intron (NM_145526, intron 1 of 11)	8362.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	7.27	5.79	5.13	8.85	5.32	6.27	7.97	8.8	4.33	1.0	13.06	7.21
Merged-chr7-106551426-3	chr7	106551339	106551539	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93206.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	34.73	45.02	62.18	80.04	38.86	53.31	33.88	47.07	10.62	6.53	11.05	4.39
Merged-chr13-34709780-1	chr13	34709680	34709880	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29862.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	2.83	2.26	6.85	8.85	7.36	12.86	8.64	11.89	2.75	16.07	6.03	4.07
Merged-chr14-33215376-1	chr14	33215276	33215476	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-1447.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.42	2.01	6.85	4.02	1.64	7.53	2.66	9.36	5.9	1.51	2.01	1.25
Merged-chr3-9609157-2	chr3	9609079	9609279	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	CpG	906.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	6.46	2.77	3.42	5.23	8.18	7.53	2.99	6.08	10.03	3.51	4.52	2.82
Merged-chr17-44736199-1	chr17	44736099	44736299	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271630)	promoter-TSS (NM_001271630)	-23.0	NM_001271631	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	4.04	4.28	1.71	6.03	0.41	3.45	7.31	4.65	7.47	6.53	4.02	5.33
Merged-chr13-35953133-2	chr13	35953039	35953239	+	881.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14767.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	6.06	16.35	23.39	13.67	10.64	25.71	16.61	14.41	2.16	6.53	6.53	4.39
Merged-chr7-27397783-3	chr7	27397683	27397883	+	881.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032610, intron 18 of 35)	intron (NM_032610, intron 18 of 35)	-1230.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	10.5	14.34	8.56	15.28	11.05	16.31	8.64	8.83	19.08	18.08	18.09	12.22
Merged-chr19-56673138-3	chr19	56673036	56673236	+	881.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-49236.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	12.92	8.05	13.12	19.71	17.59	15.05	13.95	19.35	22.03	11.55	14.57	10.02
Merged-chr8-13596122-4	chr8	13595968	13596168	+	881.9285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-33607.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	2.02	5.03	7.42	2.41	4.5	3.76	5.98	2.38	12.0	4.52	6.03	7.52
Merged-chr2-93597930-3	chr2	93597831	93598031	+	881.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44503.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	13.33	11.82	13.12	26.14	14.32	7.21	17.94	22.18	19.28	11.55	23.11	14.1
Merged-chr15-8382467-3	chr15	8382373	8382573	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	61990.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	9.29	8.3	10.27	20.51	15.14	16.31	10.63	21.08	21.64	28.12	19.6	12.53
Merged-chr11-72570786-3	chr11	72570686	72570886	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20540.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	8.88	9.31	11.41	7.64	13.5	10.35	2.66	8.94	10.23	14.06	7.03	13.47
Merged-chr11-79658386-3	chr11	79658286	79658486	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	MIRb|SINE|MIR	16700.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	10.5	14.34	20.54	16.09	9.41	14.74	6.64	3.53	30.09	26.61	20.1	13.47
Merged-chr3-37142040-3	chr3	37141938	37142138	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-16084.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	10.9	7.04	15.97	24.53	36.41	17.87	16.28	33.42	18.1	10.54	21.1	23.81
Merged-chr10-61706632-3	chr10	61706523	61706723	+	881.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8640.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	11.71	12.83	13.69	4.02	4.5	18.19	12.95	7.12	13.77	9.04	20.1	8.46
Merged-chr11-100575097-4	chr11	100574970	100575170	+	881.8839109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146318)	promoter-TSS (NM_001146318)	131.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	8.08	11.32	6.28	10.46	10.64	10.35	7.64	9.28	16.52	9.54	8.04	13.47
Merged-chr4-130878685-3	chr4	130878571	130878771	+	881.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34663.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	11.71	9.06	7.42	16.49	13.91	10.98	7.31	9.0	17.7	12.05	17.08	6.89
Merged-chr10-118882695-3	chr10	118882575	118882775	+	881.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13772.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	14.13	10.56	7.42	6.03	16.77	16.31	10.96	6.11	14.95	18.08	7.54	2.82
Merged-chr8-80031428-3	chr8	80031327	80031527	+	881.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26581.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	10.5	14.59	30.8	25.74	19.23	8.78	11.29	27.56	23.21	15.06	17.59	10.02
Merged-chr1-24682094-2	chr1	24681973	24682173	+	881.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	MTC|LTR|ERVL-MaLR	3155.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.06	5.28	11.98	2.01	9.41	8.78	6.31	6.64	19.28	11.55	17.08	13.78
Merged-chr6-100163943-3	chr6	100163847	100164047	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123411.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	12.92	9.81	12.55	15.28	16.77	13.8	14.95	25.29	14.16	15.06	13.06	10.02
Merged-chr4-46375090-3	chr4	46374968	46375168	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14355.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	13.33	13.83	1.71	14.88	11.45	11.29	13.29	11.75	10.42	10.04	9.04	4.39
Merged-chr15-67178034-3	chr15	67177968	67178168	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	10.09	11.82	18.25	20.91	8.59	11.92	11.63	12.06	8.26	16.57	15.58	8.46
Merged-chr15-97705773-3	chr15	97705648	97705848	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028003)	promoter-TSS (NM_028003)	74.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	9.29	12.07	14.83	17.29	7.77	21.32	13.95	11.02	12.19	12.05	12.06	15.35
Merged-chr6-136814931-3	chr6	136814860	136815060	+	881.8253779999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021714, intron 11 of 11)	B2_Mm1a|SINE|B2	6712.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	25.04	19.37	35.94	8.85	20.86	5.96	13.62	3.42	3.15	7.53	7.54	7.21
Merged-chr10-93429683-2	chr10	93429577	93429777	+	881.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3430.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	14.94	13.08	13.69	7.64	18.82	20.7	14.28	16.26	8.26	7.03	9.04	4.7
Merged-chr13-52079410-3	chr13	52079302	52079502	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17339.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	11.71	11.82	17.11	10.05	11.45	14.42	12.29	14.27	26.36	14.06	16.08	9.08
Merged-chr17-6963166-3	chr17	6963063	6963263	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2007.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	15.75	9.56	19.97	6.84	9.0	5.64	9.3	9.31	15.14	19.08	18.09	12.53
Merged-chr12-54981167-3	chr12	54981078	54981278	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 2 of 26)	MIRb|SINE|MIR	5158.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	12.11	15.59	16.54	3.62	12.68	14.11	7.97	16.49	12.19	14.06	12.06	10.02
Merged-chr13-20798106-3	chr13	20798015	20798215	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4002.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	6.86	10.82	17.68	11.66	10.23	11.29	11.63	10.57	26.75	19.08	26.63	14.41
Merged-chr4-120053473-5	chr4	120053426	120053626	+	881.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107680.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.46	3.27	9.13	5.23	26.59	12.54	8.97	15.53	18.49	13.56	16.08	7.52
Merged-chr2-124909954-3	chr2	124909840	124910040	+	881.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158187.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	10.9	4.78	11.98	25.74	15.14	21.95	12.95	27.64	9.05	14.56	15.07	13.78
Merged-chr17-71301494-3	chr17	71301416	71301616	+	881.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9495.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	17.77	12.58	16.54	8.04	13.09	8.78	22.92	23.69	20.46	12.55	18.09	7.52
Merged-chr18-31701394-2	chr18	31701284	31701484	+	881.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172965, intron 16 of 20)	RMER3D-int|LTR|ERVK	-58440.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	8.08	3.52	6.85	9.25	4.5	10.66	3.99	13.35	13.18	8.54	15.07	10.96
Merged-chr17-34364037-3	chr17	34363954	34364154	+	881.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 6 of 8)	Lx8|LINE|L1	9232.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	10.9	20.63	18.25	15.28	7.77	10.66	5.31	9.56	13.96	13.05	19.09	9.08
Merged-chr18-26711654-3	chr18	26711538	26711738	+	881.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-957481.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	14.94	9.31	6.28	5.23	19.23	17.56	14.28	15.0	30.09	20.59	24.62	15.04
Merged-chr11-70499864-4	chr11	70499771	70499971	+	881.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5403.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	9.69	10.31	19.4	2.82	9.0	13.17	15.94	7.21	12.98	20.59	11.05	7.83
Merged-chr7-100965276-3	chr7	100965183	100965383	+	881.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-917.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	16.96	11.32	16.54	16.89	11.05	21.01	7.31	13.77	10.23	17.07	14.57	12.84
Merged-chr19-8982894-3	chr19	8982838	8983038	+	881.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6346.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	16.96	10.31	6.28	9.65	10.23	19.13	7.31	6.53	8.26	14.06	6.03	2.82
Merged-chrX-147479104-1	chrX	147479004	147479204	+	881.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356369, intron 18 of 18)	RMER16_Mm|LTR|ERVK	-49912.0	NM_008356	16165.0	Mm.368330	NM_008356	ENSMUSG00000031289	Il13ra2	CD213a2|IL-13R-alpha-2	interleukin 13 receptor, alpha 2	protein-coding	1.62	0.5	0.0	0.8	11.05	15.37	16.28	8.44	1.57	1.0	0.0	0.0
Merged-chr17-35825748-1	chr17	35825648	35825848	+	881.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008027, exon 8 of 13)	exon (NM_008027, exon 8 of 13)	2391.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	9.69	17.61	1.14	12.87	5.32	9.72	2.66	1.4	7.67	3.01	8.04	1.57
Merged-chr3-127895144-3	chr3	127895031	127895231	+	881.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1192.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	7.67	7.04	5.13	6.44	20.46	26.34	24.58	15.81	26.16	16.57	27.13	12.22
Merged-chr10-62602844-2	chr10	62602738	62602938	+	881.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019553)	promoter-TSS (NM_019553)	-540.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	5.65	5.03	0.0	4.42	4.5	10.98	3.65	7.21	12.19	12.05	15.07	5.33
Merged-chr2-113396120-2	chr2	113396020	113396220	+	881.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-44944.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	17.36	9.31	16.54	11.66	13.5	10.66	4.32	17.64	10.03	5.52	6.53	8.77
Merged-chr5-108627217-3	chr5	108627127	108627327	+	881.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	2550.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	14.13	8.8	29.66	14.08	16.77	16.62	16.94	30.25	9.83	23.1	26.63	19.11
Merged-chr5-99247566-3	chr5	99247445	99247645	+	881.634888	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	5382.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.69	8.55	9.7	13.27	8.18	10.35	11.96	13.46	19.08	7.03	17.08	11.28
Merged-chr5-130253356-3	chr5	130253238	130253438	+	881.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023248, intron 2 of 4)	intron (NM_023248, intron 2 of 4)	2192.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	11.71	26.16	15.97	5.63	9.41	19.76	10.63	4.26	20.06	14.06	22.61	1.88
Merged-chr18-77805685-3	chr18	77805582	77805782	+	881.6277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	-9292.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	14.94	7.04	15.4	11.26	16.36	11.6	5.31	12.81	23.21	13.05	18.09	12.84
Merged-chr1-55513056-3	chr1	55512935	55513135	+	881.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	107089.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	18.17	13.33	23.96	21.72	11.45	10.03	8.97	9.14	23.01	16.57	14.57	7.83
Merged-chr1-39784834-3	chr1	39784658	39784858	+	881.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20574.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	6.06	3.02	7.99	9.65	11.45	10.03	19.6	14.55	11.01	17.07	12.06	12.53
Merged-chr16-45090241-3	chr16	45090159	45090359	+	881.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3752.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	8.88	12.32	12.55	20.11	12.27	14.74	9.3	20.66	9.64	8.54	17.08	8.46
Merged-chr7-144940375-3	chr7	144940281	144940481	+	881.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007631)	promoter-TSS (NM_007631)	-456.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	7.27	8.3	11.41	6.44	15.14	16.31	9.63	13.21	18.1	14.56	23.62	12.53
Merged-chr8-4404430-1	chr8	4404330	4404530	+	881.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	54842.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	5.25	6.79	10.27	8.45	9.41	9.09	16.61	14.94	4.33	9.04	15.58	5.64
Merged-chr13-28952908-5	chr13	28952711	28952911	+	881.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	888.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	5.25	4.53	10.27	7.64	7.77	11.92	14.28	6.03	7.47	2.51	5.02	3.45
Merged-chr11-63948602-2	chr11	63948495	63948695	+	881.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15631.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	6.06	4.53	17.11	12.07	10.64	11.92	7.64	13.99	47.4	25.11	49.24	36.65
Merged-chr11-86840098-2	chr11	86839967	86840167	+	881.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32407.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.04	1.26	2.85	2.41	9.0	12.54	3.99	5.8	6.49	11.05	7.54	10.34
Merged-chr5-118650940-3	chr5	118650857	118651057	+	881.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	90238.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.25	10.82	19.4	8.85	12.27	22.89	32.22	22.65	11.01	9.04	15.07	9.08
Merged-chr10-96163956-3	chr10	96163839	96164039	+	881.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62268.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	11.31	8.05	12.55	15.28	18.82	9.41	10.63	16.15	18.1	17.57	29.65	13.16
Merged-chr13-67421383-3	chr13	67421283	67421483	+	881.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	35.0	NM_177811	328274.0	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	16.56	28.93	24.53	22.93	20.86	30.1	30.56	25.23	11.01	7.53	10.55	7.52
Merged-chr15-64092738-3	chr15	64092638	64092838	+	881.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 27 of 28)	intron (NM_001276461, intron 27 of 28)	-32290.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	24.23	13.83	17.68	16.09	44.59	22.89	41.85	31.65	11.41	15.57	9.55	11.9
Merged-chr4-152086790-3	chr4	152086701	152086901	+	881.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104381)	promoter-TSS (NR_104381)	-62.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	13.73	8.05	9.7	12.87	12.27	15.68	11.63	12.84	19.87	17.07	10.55	9.4
Merged-chr4-132946628-3	chr4	132946526	132946726	+	881.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-24075.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	8.48	8.8	9.7	8.45	15.55	7.53	15.28	6.62	16.92	22.59	14.07	10.65
Merged-chr3-106497081-1	chr3	106496981	106497181	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	11041.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.85	1.26	3.99	4.02	5.73	4.08	7.97	4.01	3.15	1.0	0.5	2.82
Merged-chr1-60652693-3	chr1	60652646	60652846	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85981.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	4.85	11.82	13.69	14.88	4.91	6.9	16.61	8.27	10.03	10.54	8.54	5.64
Merged-chr4-36013035-1	chr4	36012935	36013135	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-167831.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	2.42	5.03	5.13	3.22	4.5	8.47	9.97	11.21	6.49	5.02	8.54	5.33
Merged-chr15-50761754-2	chr15	50761645	50761845	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	127304.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.42	4.28	14.83	4.83	10.64	10.03	10.96	9.14	19.47	17.57	40.7	6.27
Merged-chr4-133805286-4	chr4	133805218	133805418	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-51707.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	14.54	15.09	10.27	10.86	16.77	8.47	8.64	11.78	12.19	6.53	18.59	7.83
Merged-chr16-49781817-3	chr16	49781727	49781927	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73827.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	13.33	8.3	12.55	15.69	20.05	13.48	26.57	30.5	15.54	12.55	24.62	16.6
Merged-chr7-63933986-3	chr7	63933884	63934084	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4931.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	8.08	9.06	18.83	16.89	9.41	9.09	8.3	13.88	17.9	20.08	22.11	12.53
Merged-chr6-87732547-1	chr6	87732447	87732647	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1678.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	6.46	5.03	14.83	5.63	13.5	9.72	13.62	9.34	11.8	4.02	0.0	5.33
Merged-chr12-70232086-2	chr12	70231973	70232173	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045174, exon 2 of 5)	non-coding (NR_045174, exon 2 of 5)	4232.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	7.27	4.02	5.13	4.83	15.55	5.33	4.98	11.86	7.87	6.03	19.09	12.84
Merged-chr3-126831588-1	chr3	126831488	126831688	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	111798.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.42	2.77	3.42	8.04	9.41	4.39	9.3	7.68	3.93	3.01	1.51	5.01
Merged-chr8-128363449-2	chr8	128363343	128363543	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 2 of 16)	intron (NM_001358959, intron 2 of 16)	4202.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	8.08	4.78	5.7	3.62	8.18	5.96	4.65	10.37	17.9	5.52	17.08	2.82
Merged-chr8-35683722-2	chr8	35683627	35683827	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-94707.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.25	3.02	14.83	18.9	8.18	3.14	14.95	15.5	3.34	2.51	5.53	3.76
Merged-chr8-115539775-3	chr8	115539679	115539879	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	167115.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	14.13	11.07	6.85	8.45	12.27	12.23	7.97	12.42	13.77	12.05	15.58	7.83
Merged-chr12-71836168-2	chr12	71836062	71836262	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	5094.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.85	6.54	11.41	8.45	5.73	13.17	3.32	14.27	9.64	6.03	19.6	5.01
Merged-chr1-71100290-2	chr1	71100141	71100341	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007525, intron 1 of 10)	intron (NM_007525, intron 1 of 10)	2731.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	3.23	5.28	1.71	6.03	7.36	7.53	6.64	5.13	7.47	4.52	10.55	9.4
Merged-chr15-59525204-3	chr15	59525035	59525235	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-123519.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	8.88	5.28	7.99	13.27	1.23	5.64	4.32	7.79	6.1	3.01	5.53	6.89
Merged-chr6-145801067-1	chr6	145800967	145801167	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7316.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.04	3.52	3.42	0.0	7.36	12.86	9.97	8.97	2.75	3.51	4.02	1.25
Merged-chr3-75835751-3	chr3	75835654	75835854	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121195.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	17.36	7.55	5.13	15.28	18.41	11.6	10.3	27.42	5.11	9.54	19.6	8.14
Merged-chr14-122603351-1	chr14	122603251	122603451	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	69023.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	7.27	5.53	7.42	6.03	5.73	9.09	6.98	10.12	6.88	1.51	20.6	6.58
Merged-chr8-108854668-1	chr8	108854568	108854768	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-82192.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.4	2.52	0.0	0.0	20.46	5.96	11.63	11.55	4.13	2.01	5.02	3.13
Merged-chr8-33600207-6	chr8	33600118	33600318	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	CpG	597.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	7.67	8.55	11.41	8.45	8.18	8.78	5.65	10.12	10.42	22.59	10.05	9.71
Merged-chr10-67566360-3	chr10	67566246	67566446	+	881.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3662.0	NR_155445	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	11.31	8.8	6.28	9.65	16.77	8.78	11.29	17.05	14.16	12.55	18.59	11.59
Merged-chr6-83906861-3	chr6	83906763	83906963	+	881.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-7490.0	NM_001166371	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	10.5	21.38	13.69	9.65	15.55	27.28	11.96	14.52	20.65	26.61	28.64	22.56
Merged-chr14-109289042-3	chr14	109288946	109289146	+	881.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-374807.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	7.67	19.12	10.27	12.47	39.68	24.77	26.24	30.22	15.34	13.56	28.14	20.99
Merged-chr14-13361396-3	chr14	13361290	13361490	+	881.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	76610.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	9.69	7.55	10.27	12.47	89.18	105.36	112.61	112.18	105.42	120.51	112.56	81.76
Merged-chr5-114175798-3	chr5	114175715	114175915	+	881.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	10297.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	26.65	29.18	35.37	28.15	78.96	124.17	63.44	78.08	11.21	9.04	14.07	7.21
Merged-chr18-68189958-3	chr18	68189855	68190055	+	881.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-37991.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	10.09	8.3	13.12	17.29	11.86	10.66	11.29	10.74	25.96	17.07	18.59	7.83
Merged-chr8-92856477-3	chr8	92856375	92856575	+	881.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	1142.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	12.52	14.09	20.54	13.67	15.96	10.98	11.29	16.35	14.75	12.05	21.61	12.84
Merged-chr3-67568423-3	chr3	67568313	67568513	+	881.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14355.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	10.9	8.8	9.7	20.91	16.77	17.56	13.62	21.28	11.8	10.54	23.62	12.84
Merged-chr8-11016340-3	chr8	11016254	11016454	+	881.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7924.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	11.31	3.77	26.81	11.66	17.59	15.05	29.23	32.78	21.24	13.05	17.59	40.41
Merged-chr2-167388608-3	chr2	167388497	167388697	+	881.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33113.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	16.96	22.13	9.13	4.83	13.09	33.55	12.95	7.4	26.55	33.14	17.59	9.4
Merged-chr16-91056225-3	chr16	91056114	91056314	+	881.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028905, exon 3 of 3)	exon (NM_028905, exon 3 of 3)	-11835.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	9.29	16.85	8.56	11.26	8.59	13.8	3.65	15.11	22.62	12.05	23.11	16.6
Merged-chr8-94602445-2	chr8	94602335	94602535	+	881.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028221)	promoter-TSS (NM_028221)	494.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	2.02	12.32	10.84	14.48	7.36	16.31	13.62	12.2	12.98	11.55	17.08	14.41
Merged-chr17-6960955-3	chr17	6960861	6961061	+	881.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147155, intron 1 of 3)	CpG	195.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	8.08	17.86	6.28	6.44	15.14	17.87	5.98	7.57	19.08	18.08	14.57	13.78
Merged-chr6-136499435-1	chr6	136499335	136499535	+	881.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19416.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.0	2.77	0.0	0.0	0.41	1.25	0.66	1.77	27.14	20.08	17.08	8.77
Merged-chr7-125620264-3	chr7	125620149	125620349	+	881.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	MTD|LTR|ERVL-MaLR	16820.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.86	4.28	21.11	10.86	3.68	15.05	8.97	10.91	9.64	19.58	14.07	15.04
Merged-chr4-11022990-3	chr4	11022886	11023086	+	881.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15367.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	14.13	6.54	10.27	17.29	11.05	7.84	13.62	22.6	14.55	21.09	18.59	18.48
Merged-chr15-90667040-3	chr15	90666922	90667122	+	881.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	12366.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	6.46	12.07	11.98	13.67	24.14	38.57	40.86	50.83	16.72	8.03	39.19	15.35
Merged-chr6-134743841-2	chr6	134743737	134743937	+	881.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-48523.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	5.25	2.01	4.56	4.83	6.14	6.59	8.97	6.22	4.72	3.51	16.58	4.39
Merged-chrX-12158552-3	chrX	12158450	12158650	+	881.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	1796.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	14.54	8.05	5.7	14.08	6.95	12.86	3.99	14.47	9.83	11.55	13.57	10.34
Merged-chr7-125393824-3	chr7	125393723	125393923	+	881.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	24962.0	NM_001145759	75861.0	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	18.57	18.61	11.98	14.08	4.09	15.05	11.96	15.48	13.77	15.57	31.66	9.71
Merged-chr6-17463761-4	chr6	17463622	17463822	+	881.263916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008591)	promoter-TSS (NM_008591)	-235.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	8.08	11.57	7.99	8.85	11.45	7.53	7.97	9.79	7.28	9.54	7.03	8.46
Merged-chr10-40108150-2	chr10	40108057	40108257	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	34097.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.81	4.28	7.42	3.62	5.32	19.13	8.97	7.91	16.13	10.54	9.04	4.39
Merged-chr14-93199938-1	chr14	93199838	93200038	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271800, intron 3 of 3)	MIR|SINE|MIR	690731.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	1.01	1.71	7.24	8.18	10.66	11.29	10.29	1.38	0.0	0.0	3.13
Merged-chr13-30949399-3	chr13	30949302	30949502	+	881.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360093, intron 1 of 28)	intron (NM_001360093, intron 1 of 28)	896.0	NM_001360093	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	6.46	13.83	13.12	11.26	11.86	6.27	9.97	12.03	11.8	6.53	14.57	14.1
Merged-chr4-102987062-2	chr4	102986944	102987144	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163767, intron 1 of 4)	intron (NM_001163767, intron 1 of 4)	665.0	NM_026100	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	9.29	4.53	3.99	4.02	11.05	6.9	5.98	9.79	13.77	5.52	9.04	7.52
Merged-chr12-69417838-1	chr12	69417738	69417938	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45688.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	2.83	4.53	10.27	4.83	10.64	11.92	4.98	10.63	3.34	4.52	6.03	3.45
Merged-chr15-97786198-3	chr15	97786114	97786314	+	881.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	1849.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	8.88	11.07	7.42	4.02	13.91	13.48	16.28	11.66	14.16	21.09	11.56	14.1
Merged-chr5-114131656-3	chr5	114131532	114131732	+	881.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040691, intron 2 of 6)	CpG	476.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	18.57	7.8	9.13	13.67	9.0	12.86	4.98	9.42	12.59	15.57	17.59	16.29
Merged-chrX-106189484-3	chrX	106189395	106189595	+	881.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008828, intron 1 of 10)	intron (NM_008828, intron 1 of 10)	2395.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	19.79	10.56	8.56	10.46	23.32	27.91	17.27	32.3	22.23	25.11	17.59	10.65
Merged-chr9-40804001-3	chr9	40803887	40804087	+	881.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031165, intron 6 of 8)	intron (NM_031165, intron 6 of 8)	2714.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	11.31	9.56	5.7	10.86	14.73	9.72	12.29	8.07	17.31	16.07	19.09	5.01
Merged-chr10-99619637-3	chr10	99619539	99619739	+	881.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	10468.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	17.36	8.05	10.84	11.26	21.68	25.4	12.95	17.02	24.59	22.59	27.13	12.53
Merged-chr9-105519631-1	chr9	105519531	105519731	+	881.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	1626.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.81	1.76	0.0	0.8	0.82	1.88	0.0	2.38	11.41	15.06	17.59	12.53
Merged-chr17-71662818-3	chr17	71662717	71662917	+	881.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10444.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	14.54	14.84	9.13	9.65	14.73	25.09	7.31	13.07	13.37	14.56	16.58	6.89
Merged-chr9-114870179-1	chr9	114870079	114870279	+	881.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-26027.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	13.73	3.77	6.28	6.84	9.41	6.59	6.31	8.86	5.51	1.0	3.01	2.82
Merged-chr17-8508486-1	chr17	8508386	8508586	+	881.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18315.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	2.83	1.51	4.56	2.41	13.91	9.41	10.96	8.05	0.79	0.0	2.01	1.57
Merged-chr3-107274028-3	chr3	107273936	107274136	+	881.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4822.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	20.59	15.34	18.25	18.1	13.09	6.9	5.65	18.45	21.64	18.08	18.09	15.35
Merged-chr6-38320773-2	chr6	38320670	38320870	+	881.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 7 of 8)	RLTR45|LTR|ERVK	-21511.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	10.5	2.01	7.42	7.24	8.18	11.29	8.64	8.8	10.42	20.59	6.03	15.04
Merged-chr11-62103648-3	chr11	62103549	62103749	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029936, intron 1 of 12)	MLT1G3|LTR|ERVL-MaLR	26625.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	13.33	10.82	20.54	20.91	18.41	15.05	14.62	20.55	10.82	6.03	16.08	16.6
Merged-chr7-17002547-3	chr7	17002468	17002668	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7980.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	8.88	14.09	9.13	10.46	9.0	7.53	12.62	11.89	13.77	8.54	15.07	15.04
Merged-chr11-73176518-3	chr11	73176430	73176630	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029564)	promoter-TSS (NM_029564)	478.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	7.67	14.59	8.56	4.02	22.5	20.7	18.93	7.54	10.62	22.09	20.1	8.14
Merged-chr5-134456810-3	chr5	134456707	134456907	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001244936)	promoter-TSS (NM_001244936)	-91.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	7.27	7.04	15.4	14.08	13.5	23.83	14.28	19.79	22.82	22.09	19.09	12.53
Merged-chr16-77084878-3	chr16	77084774	77084974	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70805.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	11.71	7.8	12.55	7.64	13.5	15.68	9.97	10.68	18.69	24.1	25.12	15.04
Merged-chr11-86610401-2	chr11	86610302	86610502	+	881.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 8 of 11)	RSINE1|SINE|B4	-26244.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	2.42	2.52	1.14	4.83	17.59	12.23	14.62	9.0	11.21	7.53	20.6	11.9
Merged-chr19-8843128-2	chr19	8843028	8843228	+	881.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	2625.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	6.86	4.78	2.28	7.24	14.32	13.48	14.62	11.33	9.05	10.54	8.54	9.71
Merged-chr4-34765908-3	chr4	34765789	34765989	+	881.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-9630.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	12.92	6.04	12.55	20.91	1.23	8.78	9.97	6.59	17.7	8.54	30.65	15.66
Merged-chr15-27884602-3	chr15	27884486	27884686	+	881.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	141262.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	8.48	10.82	10.84	4.42	8.59	12.54	13.62	15.06	14.36	12.05	23.62	14.72
Merged-chr15-101453474-3	chr15	101453350	101453550	+	881.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025487, intron 4 of 4)	intron (NM_025487, intron 4 of 4)	5705.0	NM_025487	66322.0	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	23.82	17.36	7.42	8.85	15.96	9.41	9.63	18.45	12.39	9.54	13.06	11.28
Merged-chr17-65854240-3	chr17	65854152	65854352	+	881.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198949, intron 6 of 9)	intron (NM_001198949, intron 6 of 9)	30671.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	24.23	23.9	27.38	10.46	24.55	31.04	18.27	21.11	12.19	10.54	13.57	13.16
Merged-chr6-120795710-3	chr6	120795618	120795818	+	881.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007510, exon 9 of 9)	exon (NM_007510, exon 9 of 9)	21950.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	16.96	10.31	22.82	24.94	9.82	9.41	13.95	13.46	13.18	15.57	15.07	5.95
Merged-chr4-41310803-3	chr4	41310706	41310906	+	881.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026893, intron 2 of 8)	RSINE1|SINE|B4	4095.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	11.71	7.55	7.42	6.03	8.59	12.23	5.98	6.73	17.51	12.05	16.08	9.4
Merged-chr13-119809753-3	chr13	119809667	119809867	+	881.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18645.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	8.08	7.8	17.11	9.65	22.5	14.42	4.98	20.64	23.6	15.57	25.63	15.98
Merged-chr7-46846349-3	chr7	46846253	46846453	+	881.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	549.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	8.08	8.55	15.4	12.47	7.77	16.31	9.63	14.07	11.21	15.06	19.09	17.54
Merged-chr8-80919273-3	chr8	80919169	80919369	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38750.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	4.85	4.02	12.55	6.84	24.96	29.16	34.21	40.85	23.41	23.6	40.7	14.1
Merged-chr4-59569754-3	chr4	59569644	59569844	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-11819.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	16.15	13.83	14.26	9.65	22.5	13.8	11.96	21.84	24.39	22.59	15.07	8.46
Merged-chr1-185350525-1	chr1	185350425	185350625	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12519.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	4.44	3.77	8.56	3.62	6.55	2.82	5.31	8.27	1.77	0.0	0.0	0.63
Merged-chr8-26768348-1	chr8	26768248	26768448	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56075.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.62	4.78	5.13	5.23	11.45	8.15	10.3	13.29	6.29	5.52	13.57	6.58
Merged-chr5-90905722-3	chr5	90905636	90905836	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009140, exon 4 of 4)	3' UTR (NM_009140, exon 4 of 4)	1837.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	25.84	29.93	11.98	3.62	12.68	22.89	4.98	1.43	21.83	19.58	10.55	1.25
Merged-chr4-105704468-1	chr4	105704368	105704568	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-536745.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	5.65	4.02	2.85	6.84	6.14	5.33	4.65	6.73	4.92	6.03	8.04	6.58
Merged-chr10-24493894-2	chr10	24493795	24493995	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101547.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	1.62	3.02	6.28	6.03	2.05	5.64	8.3	8.89	11.01	12.55	16.08	13.47
Merged-chr5-5860958-1	chr5	5860858	5861058	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111641.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	2.42	2.52	2.28	0.0	9.82	3.14	5.98	7.91	3.54	2.01	6.53	2.82
Merged-chr7-128225303-1	chr7	128225203	128225403	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12054.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	3.63	3.27	4.56	6.03	10.64	4.7	7.31	9.5	3.93	5.02	13.57	2.82
Merged-chr12-55831250-1	chr12	55831150	55831350	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5116.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	5.65	8.3	4.56	5.23	4.5	8.15	1.99	7.49	9.24	6.53	6.03	4.39
Merged-chr13-51839799-1	chr13	51839699	51839899	+	881.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6876.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.25	7.55	4.56	12.07	6.14	10.66	1.0	6.11	17.51	13.05	11.56	7.52
Merged-chr4-66841699-1	chr4	66841599	66841799	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14148.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	10.5	3.02	2.28	8.04	3.68	1.25	10.63	8.3	2.36	9.54	4.52	2.51
Merged-chr1-118472725-3	chr1	118472628	118472828	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-13463.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	8.88	8.3	9.7	4.83	16.77	29.48	31.89	43.32	32.85	22.59	26.13	2.19
Merged-chr12-100211219-2	chr12	100211126	100211326	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11082.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	13.33	9.06	5.13	4.83	2.86	15.37	3.32	5.1	6.49	3.51	3.52	4.07
Merged-chr3-51475936-3	chr3	51475832	51476032	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053089)	TTS (NM_053089)	-8034.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	14.94	16.1	17.11	14.08	12.68	11.92	10.3	14.22	17.51	9.04	15.07	5.95
Merged-chr12-113152628-1	chr12	113152528	113152728	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007763, intron 1 of 4)	intron (NM_007763, intron 1 of 4)	616.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	4.85	3.52	2.85	2.41	14.32	11.6	7.31	7.96	5.51	5.02	3.52	4.07
Merged-chr16-15569394-1	chr16	15569294	15569494	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159351, intron 2 of 2)	MTD|LTR|ERVL-MaLR	25124.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	4.44	6.79	8.56	11.66	2.45	6.9	3.32	13.51	6.1	3.51	14.07	6.89
Merged-chr4-95054664-3	chr4	95054572	95054772	+	880.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2450.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	14.54	16.6	25.1	22.93	9.82	6.27	5.65	12.53	25.77	14.56	13.57	9.4
Merged-chr10-117731446-3	chr10	117731359	117731559	+	880.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14899.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	6.06	7.55	11.41	12.47	12.27	19.44	7.97	10.99	15.34	17.07	20.6	9.4
Merged-chr12-3873297-5	chr12	3873290	3873490	+	880.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271753, exon 6 of 23)	exon (NM_001271753, exon 6 of 23)	-11146.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	2.83	3.02	4.56	2.82	6.14	2.51	2.33	2.97	5.7	8.03	5.02	5.01
Merged-chr13-51202931-2	chr13	51202824	51203024	+	880.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_132443, exon 1 of 1)	non-coding (NR_132443, exon 1 of 1)	142.0	NR_132443	667728.0		NR_132443		Hist1h2al	EG667728	histone cluster 1, H2al	pseudo	14.13	20.12	15.4	21.72	23.32	19.13	10.3	14.44	0.39	1.0	4.52	0.63
Merged-chr4-133662445-2	chr4	133662300	133662500	+	880.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001145956, exon 3 of 3)	3' UTR (NM_001145956, exon 3 of 3)	10247.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	1.62	6.54	7.99	10.46	3.68	10.66	9.97	6.39	0.59	0.0	2.51	3.76
Merged-chr17-23786165-3	chr17	23786078	23786278	+	880.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029798)	promoter-TSS (NM_029798)	38.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	36.75	8.55	11.41	20.51	36.82	32.3	16.61	19.96	10.42	12.55	20.6	14.41
Merged-chr1-136570747-3	chr1	136570655	136570855	+	880.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54146.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	8.48	13.33	14.83	19.71	15.55	10.35	7.64	19.77	23.01	15.06	33.67	14.41
Merged-chr17-35836391-3	chr17	35836298	35836498	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011655, intron 2 of 3)	intron (NM_011655, intron 2 of 3)	1903.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	23.82	13.33	7.99	8.04	16.36	16.62	10.3	11.8	20.65	23.1	17.59	20.68
Merged-chr5-142222345-1	chr5	142222245	142222445	+	880.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-179152.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	1.62	2.01	1.14	0.4	0.82	0.31	1.33	4.68	15.14	12.05	30.65	17.23
Merged-chr12-100531068-3	chr12	100530955	100531155	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10233.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	8.08	12.32	2.28	11.66	16.36	21.95	16.61	22.88	20.65	14.56	25.63	11.59
Merged-chr1-136635890-3	chr1	136635769	136635969	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10968.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	18.57	9.81	23.39	16.49	11.45	17.87	8.97	23.02	12.59	11.05	25.12	12.22
Merged-chr12-4593338-8	chr12	4593190	4593390	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198969, intron 1 of 16)	CpG	282.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	6.06	5.03	6.28	4.02	2.86	3.45	2.66	3.59	9.44	12.05	13.57	6.89
Merged-chr13-69392353-2	chr13	69392226	69392426	+	880.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141538.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.4	2.52	1.14	0.8	11.45	6.9	9.3	5.94	29.7	16.57	21.1	11.9
Merged-chr2-30783560-3	chr2	30783444	30783644	+	880.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	18193.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	16.56	9.06	16.54	0.8	14.73	13.48	8.64	13.09	19.28	24.1	21.1	10.96
Merged-chr3-139025267-3	chr3	139025170	139025370	+	880.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	49931.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	22.21	12.32	14.83	4.42	18.41	19.76	13.62	17.33	24.59	26.11	17.08	6.58
Merged-chr8-10172482-2	chr8	10172370	10172570	+	880.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	18559.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	2.42	3.52	1.14	1.61	8.59	13.8	4.65	10.07	17.31	18.58	13.06	11.9
Merged-chr16-94546385-2	chr16	94546295	94546495	+	880.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19766.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	7.67	5.53	10.27	3.62	11.05	10.03	6.64	7.21	14.55	6.53	14.57	4.39
Merged-chr10-24090534-1	chr10	24090434	24090634	+	880.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001010837)	TTS (NM_001010837)	1760.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	1.62	4.28	4.56	12.47	12.27	8.15	5.65	14.5	8.46	5.52	7.54	5.64
Merged-chr15-28405363-3	chr15	28405270	28405470	+	880.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201604.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	9.29	11.32	9.13	14.08	15.14	7.53	10.96	18.73	15.74	12.55	17.59	14.72
Merged-chr10-67049447-3	chr10	67049348	67049548	+	880.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44373.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	12.11	8.8	13.69	13.27	9.82	17.56	8.64	9.67	21.64	12.55	9.04	19.42
Merged-chr10-56824351-2	chr10	56824287	56824487	+	880.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	392406.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	4.85	5.79	5.7	22.12	2.45	5.96	9.63	17.97	12.0	12.55	9.04	6.89
Merged-chr7-90137024-3	chr7	90136930	90137130	+	880.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	B2_Mm1t|SINE|B2	6817.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	9.69	13.08	3.42	8.04	21.27	26.34	7.64	9.45	9.05	21.59	21.1	15.98
Merged-chr7-55859669-3	chr7	55859579	55859779	+	880.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	17608.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	10.09	6.54	13.69	17.7	25.77	28.85	14.95	24.28	28.13	34.14	73.86	19.11
Merged-chr16-87594266-1	chr16	87594166	87594366	+	880.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144854, exon 5 of 5)	exon (NM_144854, exon 5 of 5)	40936.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.04	1.01	8.56	7.64	11.45	14.11	18.93	22.85	7.47	2.51	11.56	5.64
Merged-chr1-177795502-2	chr1	177795417	177795617	+	880.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007422, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	992.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	8.08	6.29	0.57	3.62	12.68	17.87	2.66	11.1	23.01	11.05	15.07	4.39
Merged-chr18-11687015-2	chr18	11686912	11687112	+	880.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	29663.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.65	11.07	5.7	24.53	0.41	1.57	1.33	2.19	16.52	11.55	14.57	12.22
Merged-chr15-90645080-2	chr15	90644969	90645169	+	880.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033851, intron 3 of 3)	intron (NM_001033851, intron 3 of 3)	34319.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.44	5.79	4.56	9.65	38.46	24.46	45.18	55.65	12.0	12.05	13.06	10.02
Merged-chr8-111182259-2	chr8	111182162	111182362	+	880.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 9 of 25)	intron (NM_009149, intron 9 of 25)	-36764.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	2.42	2.52	4.56	6.84	14.32	10.98	4.65	15.39	18.69	17.57	27.64	9.4
Merged-chr6-134927232-4	chr6	134927152	134927352	+	880.635376	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1840.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	9.69	8.8	12.55	5.23	5.73	9.09	10.3	10.18	7.08	10.54	18.59	10.96
Merged-chr5-42977316-2	chr5	42977201	42977401	+	880.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-256162.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.65	3.27	5.7	6.03	5.73	15.05	12.95	13.01	13.96	9.04	17.59	11.28
Merged-chr5-122422347-5	chr5	122422253	122422453	+	880.6166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-91.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	12.52	8.55	9.7	10.05	7.77	5.33	8.3	4.46	12.59	8.54	7.03	11.9
Merged-chr2-155472910-3	chr2	155472800	155473000	+	880.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32117.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	10.09	9.56	10.27	10.86	26.59	15.68	11.63	19.37	14.75	17.07	16.58	13.47
Merged-chr11-103032943-3	chr11	103032838	103033038	+	880.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4395.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	12.52	6.79	17.11	6.44	20.46	14.11	14.62	13.57	18.29	27.62	18.59	8.14
Merged-chr9-121320636-3	chr9	121320528	121320728	+	880.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	23126.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	8.48	8.3	12.55	5.63	15.14	11.6	2.33	19.32	11.6	6.53	20.1	10.34
Merged-chr11-102318132-5	chr11	102317957	102318157	+	880.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-770.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	12.52	19.12	5.13	10.86	12.27	11.29	8.3	8.07	17.7	9.54	11.56	20.05
Merged-chr9-21463966-2	chr9	21463872	21464072	+	880.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 2 of 19)	B4A|SINE|B4	32592.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	3.63	3.02	2.85	5.63	13.91	7.84	15.28	13.46	15.14	7.53	8.04	8.46
Merged-chr12-26444210-2	chr12	26444087	26444287	+	880.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021384, exon 6 of 6)	3' UTR (NM_021384, exon 6 of 6)	12265.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	8.48	10.06	3.99	11.66	14.32	12.54	5.98	10.63	7.28	9.54	15.58	1.88
Merged-chr2-166676647-3	chr2	166676553	166676753	+	880.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	37179.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	11.71	13.08	12.55	4.02	3.68	9.41	8.64	12.79	29.11	14.06	11.56	12.53
Merged-chr6-145244454-3	chr6	145244352	145244552	+	880.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	5779.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	10.9	8.55	11.98	14.48	27.0	14.11	14.62	32.44	24.0	17.57	24.12	20.36
Merged-chr2-124579487-3	chr2	124579394	124579594	+	880.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-30802.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	11.31	10.56	17.68	16.09	18.41	9.72	11.63	18.17	11.6	5.02	16.58	6.27
Merged-chr5-87143301-2	chr5	87143210	87143410	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-2970.0	NM_009467	22238.0	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0.4	1.51	2.28	6.84	8.18	5.64	2.33	9.95	7.87	7.53	16.58	13.47
Merged-chr6-116141026-3	chr6	116140924	116141124	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	52350.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	21.0	7.8	10.27	7.64	13.09	15.37	3.65	9.45	15.14	19.08	3.01	3.76
Merged-chr2-103832138-3	chr2	103832028	103832228	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-21506.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	13.33	16.35	18.83	14.48	12.27	30.42	17.27	4.04	12.0	17.57	12.06	5.95
Merged-chr11-94348137-2	chr11	94348067	94348267	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	20166.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.81	1.51	3.42	1.61	15.96	14.11	8.97	9.0	11.01	8.03	5.02	13.78
Merged-chr7-141488380-1	chr7	141488280	141488480	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	12000.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	3.23	2.52	0.57	3.22	6.55	0.63	6.98	2.58	2.75	1.0	4.52	2.51
Merged-chr4-119663637-1	chr4	119663537	119663737	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-4692.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	2.02	0.25	1.71	0.0	12.68	10.98	12.29	8.89	4.13	3.01	5.53	3.13
Merged-chr8-90869501-3	chr8	90869408	90869608	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	40673.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	12.92	13.58	13.12	15.69	14.32	17.87	18.6	24.11	10.62	10.04	8.54	2.82
Merged-chr10-84109894-3	chr10	84109807	84110007	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9210.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	12.92	12.83	7.99	11.26	10.23	8.78	10.63	9.03	14.75	19.08	20.6	12.84
Merged-chr9-13581516-1	chr9	13581416	13581616	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-38473.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.65	3.02	6.85	11.66	7.36	5.02	3.32	7.43	3.34	3.01	5.02	1.57
Merged-chr11-117978045-3	chr11	117977973	117978173	+	880.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8707.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	16.56	25.91	14.26	2.41	9.0	33.87	7.97	3.67	34.62	41.67	21.61	4.7
Merged-chr15-25364226-3	chr15	25364143	25364343	+	880.444458	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49521.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.42	4.53	5.13	6.84	6.95	7.21	7.97	5.83	6.88	9.04	11.56	5.33
Merged-chr12-40470551-3	chr12	40470455	40470655	+	880.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	24502.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	10.5	21.38	14.26	12.47	13.09	10.66	3.65	9.2	35.8	13.05	21.1	12.84
Merged-chr17-27591975-2	chr17	27591893	27592093	+	880.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	A-rich|Low_complexity|Low_complexity	-26266.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	18.57	16.1	24.53	11.26	2.05	2.51	0.0	1.09	16.92	17.07	13.57	9.71
Merged-chr9-55395857-3	chr9	55395762	55395962	+	880.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	68949.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	14.13	5.53	17.11	11.66	16.36	15.05	15.61	21.95	15.14	15.06	19.09	7.83
Merged-chr12-119313179-3	chr12	119313071	119313271	+	880.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74895.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	9.69	10.56	19.4	12.47	12.27	6.9	5.31	14.16	19.67	13.56	7.54	14.1
Merged-chr2-78923114-3	chr2	78923033	78923233	+	880.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151457, intron 6 of 6)	intron (NR_151457, intron 6 of 6)	53455.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	11.31	15.59	23.39	17.29	14.73	11.6	18.93	22.43	13.37	16.07	10.55	6.89
Merged-chr6-34340684-3	chr6	34340571	34340771	+	880.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13475.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	10.5	7.29	14.83	10.46	17.59	12.23	12.95	23.07	16.13	17.07	25.12	14.72
Merged-chr7-140845030-3	chr7	140844863	140845063	+	880.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099742)	promoter-TSS (NM_001099742)	-602.0	NM_001099742	338417.0	Mm.270960	NM_001099742	ENSMUSG00000038801	Scgb1c1	Ryd5	secretoglobin, family 1C, member 1	protein-coding	6.86	11.32	2.28	5.63	4.91	11.6	3.65	6.14	15.54	9.04	14.57	3.13
Merged-chr9-104271884-3	chr9	104271765	104271965	+	880.377808	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8935.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	10.09	16.35	17.68	15.28	8.59	15.05	15.61	28.4	19.67	13.05	29.65	16.29
Merged-chr7-140908810-3	chr7	140908718	140908918	+	880.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015583)	TTS (NR_015583)	2754.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	15.34	12.07	11.41	8.04	16.77	14.42	19.93	11.3	9.64	11.05	25.12	18.8
Merged-chr8-94772116-3	chr8	94772013	94772213	+	880.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009142)	promoter-TSS (NM_009142)	-67.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	17.36	8.3	15.4	18.9	6.14	9.09	13.62	12.22	15.34	12.55	14.57	2.51
Merged-chr4-149398441-2	chr4	149398349	149398549	+	880.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022022, intron 2 of 26)	intron (NM_022022, intron 2 of 26)	28182.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	6.46	4.53	14.83	14.88	9.0	15.05	12.29	15.28	8.06	3.01	16.58	3.13
Merged-chr2-29130306-1	chr2	29130206	29130406	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198033, exon 4 of 26)	exon (NM_198033, exon 4 of 26)	5314.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	3.63	5.53	3.42	15.28	10.64	12.86	8.97	10.12	6.49	2.51	10.05	8.14
Merged-chr10-118596133-3	chr10	118596033	118596233	+	880.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39608.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	9.69	14.34	10.27	10.05	27.82	19.76	9.97	14.61	31.47	11.55	39.19	14.41
Merged-chr10-12035348-1	chr10	12035248	12035448	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	426124.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	4.04	8.3	0.57	6.44	4.5	10.66	8.3	14.83	0.98	2.01	5.02	2.82
Merged-chrX-105926470-3	chrX	105926339	105926539	+	880.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 1 of 34)	ORR1C2-int|LTR|ERVL-MaLR	2933.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	10.5	10.06	10.27	10.86	12.27	11.29	11.63	14.24	13.77	15.06	8.54	13.78
Merged-chr17-25813755-1	chr17	25813655	25813855	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164225, intron 1 of 5)	CpG	4670.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	5.25	6.54	10.27	6.84	4.91	13.48	8.64	9.45	7.47	7.53	4.52	6.58
Merged-chr3-116483495-1	chr3	116483395	116483595	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24680.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	9.29	5.79	3.42	6.84	11.05	5.33	7.31	14.13	7.08	8.54	13.06	8.46
Merged-chr15-25832755-2	chr15	25832650	25832850	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10548.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.44	2.77	7.99	6.44	18.82	7.84	11.63	21.67	12.59	12.55	21.61	10.02
Merged-chr1-58723829-1	chr1	58723729	58723929	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6723.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	12.92	16.6	11.98	4.02	18.82	38.57	7.31	5.69	10.82	18.08	12.56	5.64
Merged-chr4-116556028-3	chr4	116555982	116556182	+	880.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177670)	promoter-TSS (NM_177670)	-139.0	NM_177670	230657.0	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	8.08	11.32	3.99	10.05	6.95	4.08	10.3	5.72	8.26	9.04	11.56	3.45
Merged-chr15-97833406-1	chr15	97833306	97833506	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1639.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.85	4.53	4.56	8.04	10.23	10.03	4.32	10.35	1.97	2.51	9.55	6.27
Merged-chr8-123280585-1	chr8	123280485	123280685	+	880.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016925, intron 30 of 42)	RLTR17B_Mm|LTR|ERVK	-26363.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.81	3.52	0.0	0.0	0.41	1.57	1.0	0.14	14.75	19.58	17.59	9.71
Merged-chr13-58622835-1	chr13	58622735	58622935	+	880.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11958.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	6.06	6.79	1.71	7.24	3.27	9.72	3.65	2.94	19.28	13.56	16.58	2.51
Merged-chr11-20500715-2	chr11	20500634	20500834	+	880.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16D1|LTR|ERVL	-42519.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	1.21	7.04	7.42	6.03	10.64	9.72	5.98	6.84	12.98	5.02	16.08	7.21
Merged-chr10-75151491-3	chr10	75151384	75151584	+	880.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-60589.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	17.77	10.56	18.83	14.88	20.05	24.77	4.65	17.8	11.01	13.05	16.08	13.47
Merged-chr6-65510470-3	chr6	65510352	65510552	+	880.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79946.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	12.11	11.82	4.56	13.67	11.05	18.19	11.29	12.25	22.42	12.55	31.15	11.9
Merged-chrX-106135677-3	chrX	106135601	106135801	+	880.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7574.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	14.54	13.33	10.27	4.42	23.32	14.11	15.28	17.3	13.77	9.54	11.56	11.59
Merged-chr4-132030244-3	chr4	132030124	132030324	+	880.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	18854.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	9.69	4.53	5.7	12.87	11.86	6.9	7.64	15.62	9.83	4.52	20.1	11.59
Merged-chr1-189973135-1	chr1	189973035	189973235	+	880.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50844.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.81	6.29	5.13	7.64	7.36	5.33	9.3	9.81	3.54	5.02	4.02	3.45
Merged-chr3-118044449-1	chr3	118044349	118044549	+	880.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-175513.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	6.86	4.02	4.56	5.63	12.68	5.96	11.96	12.17	5.7	10.04	5.53	5.33
Merged-chr18-84849151-3	chr18	84849052	84849252	+	880.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-2186.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	9.69	8.3	4.56	7.64	22.09	16.93	18.27	11.52	25.18	19.08	11.05	9.71
Merged-chr11-72547400-3	chr11	72547298	72547498	+	880.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029932, intron 1 of 11)	intron (NM_029932, intron 1 of 11)	2848.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	18.17	20.12	14.26	7.64	23.32	30.1	10.63	6.48	17.9	20.59	19.6	8.77
Merged-chr8-85700867-3	chr8	85700793	85700993	+	880.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106189)	promoter-TSS (NR_106189)	-12.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	16.15	13.33	21.68	10.46	21.27	21.95	7.97	13.07	17.51	7.53	13.06	11.28
Merged-chr13-49326459-3	chr13	49326351	49326551	+	880.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15098.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	13.73	10.31	14.83	14.08	24.55	25.71	5.98	11.8	15.14	19.58	19.6	5.64
Merged-chr15-85653913-4	chr15	85653751	85653951	+	880.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49922.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	6.06	6.54	0.0	11.26	13.5	8.15	15.28	15.22	8.65	10.04	10.55	12.84
Merged-chr17-26101551-1	chr17	26101451	26101651	+	880.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6081.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	13.73	12.58	7.99	19.71	2.45	1.25	3.65	4.99	0.39	4.02	2.01	2.19
Merged-chr17-35837681-3	chr17	35837577	35837777	+	880.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	624.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	16.15	16.6	9.13	5.63	8.18	26.03	10.96	5.78	23.8	11.55	22.61	10.34
Merged-chr3-98033401-1	chr3	98033301	98033501	+	880.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19863.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	2.42	4.78	9.13	11.66	9.0	7.53	10.3	14.41	7.08	4.52	24.12	7.21
Merged-chr13-95618543-3	chr13	95618442	95618642	+	880.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010169)	promoter-TSS (NM_010169)	-76.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	9.69	6.04	10.84	7.24	11.45	14.74	11.63	12.14	4.52	12.05	11.05	15.04
Merged-chr1-131957927-2	chr1	131957832	131958032	+	880.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4983.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.04	3.27	21.11	12.87	16.77	5.64	8.64	15.73	6.69	9.04	10.05	5.33
Merged-chr1-180390599-2	chr1	180390508	180390708	+	880.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60059.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	8.08	6.04	5.13	13.27	7.36	10.03	2.99	14.24	15.93	9.54	14.07	14.1
Merged-chr7-100946638-2	chr7	100946535	100946735	+	880.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	-14474.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	11.71	3.02	12.55	11.66	16.36	14.11	17.27	13.26	4.52	9.04	7.54	6.89
Merged-chr14-79535498-3	chr14	79535419	79535619	+	880.1277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	19845.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	16.56	15.59	16.54	6.44	8.59	18.5	8.64	16.74	13.57	10.54	19.6	12.22
Merged-chr11-8628929-3	chr11	8628854	8629054	+	880.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35581.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	13.73	4.53	16.54	15.28	11.86	6.59	6.98	18.31	14.95	8.54	14.07	9.71
Merged-chr3-145964171-3	chr3	145964070	145964270	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23700.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	14.13	9.31	23.39	13.67	22.09	44.53	40.19	36.59	14.75	16.07	19.6	28.82
Merged-chr18-5320330-3	chr18	5320220	5320420	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360447, intron 1 of 4)	L1M4b|LINE|L1	14119.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	11.31	3.02	13.69	10.05	17.59	18.81	10.63	16.04	20.26	8.03	24.12	8.77
Merged-chr4-89123573-3	chr4	89123480	89123680	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4646.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	19.38	30.43	15.97	8.45	9.82	16.31	13.95	12.22	26.36	13.05	16.08	8.77
Merged-chr13-52268492-3	chr13	52268387	52268587	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	171746.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	12.92	5.53	14.83	12.47	16.77	14.42	13.29	15.95	8.46	11.55	19.6	10.65
Merged-chr9-90275548-7	chr9	90275453	90275653	+	880.095215	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-4784.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	9.69	5.28	6.28	6.03	9.82	5.33	8.64	8.83	13.96	12.05	20.1	17.54
Merged-chr10-99199742-2	chr10	99199638	99199838	+	880.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63493.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	10.09	5.53	6.85	7.24	7.77	11.92	8.64	8.36	17.9	8.03	18.09	3.45
Merged-chr4-59596799-3	chr4	59596685	59596885	+	880.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	15222.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	14.54	17.61	37.08	23.73	11.86	6.27	9.97	17.97	12.0	12.05	12.06	12.84
Merged-chr6-89050771-3	chr6	89050674	89050874	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-45336.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	22.61	13.08	36.51	19.71	35.59	23.2	42.52	34.54	12.59	10.54	13.57	7.52
Merged-chr2-167057848-3	chr2	167057751	167057951	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-5083.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	3.23	7.04	23.39	22.93	13.09	12.54	18.93	16.63	16.33	20.59	14.57	12.84
Merged-chr11-119392226-3	chr11	119392133	119392333	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1761.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	8.08	12.58	9.13	6.44	16.36	13.17	4.98	14.75	23.6	25.11	18.09	13.78
Merged-chr6-86493592-3	chr6	86493484	86493684	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-5357.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	10.9	6.79	11.41	10.86	18.0	21.01	13.29	16.65	28.32	16.07	29.14	15.04
Merged-chr10-43123615-3	chr10	43123532	43123732	+	880.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175407, intron 4 of 6)	Lx6|LINE|L1	50898.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	10.09	10.06	31.38	30.16	13.09	7.21	12.29	32.64	11.8	11.55	20.1	20.99
Merged-chr5-38684572-4	chr5	38684455	38684655	+	880.0208130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081144, intron 1 of 3)	CpG	271.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	5.65	7.55	2.85	11.66	9.0	12.23	14.95	15.11	3.15	9.04	6.53	7.83
Merged-chr13-110943175-3	chr13	110943071	110943271	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39325.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	2.42	6.79	12.55	4.83	28.23	23.2	24.25	33.17	19.28	30.63	23.62	18.17
Merged-chr5-27791024-1	chr5	27790924	27791124	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018878, intron 1 of 20)	CpG	526.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	6.46	11.32	2.28	7.24	12.27	9.41	8.97	11.1	14.36	18.08	19.6	12.84
Merged-chr3-149290340-3	chr3	149290259	149290459	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15622.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	18.57	5.79	5.7	15.28	5.32	8.15	10.96	18.73	12.59	10.54	15.07	12.84
Merged-chr19-41773928-1	chr19	41773828	41774028	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 10 of 11)	intron (NM_027667, intron 10 of 11)	26967.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	3.23	10.31	4.56	6.84	4.09	5.02	9.63	6.28	8.46	16.07	20.6	7.21
Merged-chr10-23858236-1	chr10	23858136	23858336	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011979, intron 3 of 6)	MMETn-int|LTR|ERVK	6774.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.03	11.21	9.04	13.06	6.27
Merged-chr18-17490455-1	chr18	17490355	17490555	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90535.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	2.42	3.77	2.28	0.0	9.41	6.59	2.33	9.48	0.59	3.01	0.5	0.0
Merged-chr1-135659230-1	chr1	135659130	135659330	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60833.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	2.41	8.59	7.53	5.98	10.07	4.33	3.01	3.01	2.19
Merged-chr3-109342198-2	chr3	109342097	109342297	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1514.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.65	6.79	18.25	17.7	4.09	10.35	5.98	11.69	9.24	6.53	5.02	5.64
Merged-chr9-109875976-1	chr9	109875876	109876076	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007658, exon 1 of 15)	5' UTR (NM_007658, exon 1 of 15)	397.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	24.23	24.15	15.4	12.47	20.46	16.62	12.62	15.53	24.98	12.55	24.12	13.78
Merged-chr1-183553361-1	chr1	183553261	183553461	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134113.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.0	1.51	0.0	0.8	0.82	0.0	0.33	0.9	11.41	8.03	20.1	6.89
Merged-chr11-75534588-1	chr11	75534488	75534688	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	2476.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	2.83	4.02	5.13	8.04	7.77	4.7	2.33	6.9	3.93	0.0	2.51	1.25
Merged-chr16-10996721-3	chr16	10996601	10996801	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3580.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	7.27	5.03	5.13	6.84	11.45	30.42	23.25	13.07	15.34	11.55	22.11	4.7
Merged-chr6-52491374-1	chr6	52491274	52491474	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1077.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	5.65	2.52	2.28	8.45	9.82	3.14	4.98	14.19	6.88	5.02	26.63	9.08
Merged-chr17-5293874-3	chr17	5293785	5293985	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	124882.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	16.15	5.79	18.25	14.88	13.09	11.29	11.63	21.73	10.23	11.05	12.56	17.86
Merged-chrX-163243051-1	chrX	163242951	163243151	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	109513.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	9.29	5.53	9.7	5.23	4.09	5.33	5.98	10.63	7.28	4.52	5.02	6.58
Merged-chr9-41951236-3	chr9	41951145	41951345	+	879.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125968.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	15.34	8.3	5.13	10.46	18.0	24.46	17.27	15.45	19.47	12.55	18.59	9.71
Merged-chr2-131430650-3	chr2	131430542	131430742	+	879.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61220.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	14.54	5.53	12.55	7.64	18.0	30.1	8.64	14.83	23.41	16.07	17.08	5.01
Merged-chr11-50841581-3	chr11	50841485	50841685	+	879.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290779)	promoter-TSS (NM_001290779)	-33.0	NM_173387	214779.0	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding	10.9	7.55	11.41	13.67	29.46	15.99	16.94	33.36	20.46	27.11	25.63	16.6
Merged-chr13-28958627-3	chr13	28958544	28958744	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4945.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	11.71	9.06	2.85	15.28	23.73	10.66	14.95	19.79	8.85	7.53	7.03	9.4
Merged-chr9-37347760-3	chr9	37347659	37347859	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081429, exon 2 of 16)	exon (NM_001081429, exon 2 of 16)	633.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	12.92	17.1	3.42	4.83	9.0	11.92	1.99	3.59	25.57	26.11	7.54	9.71
Merged-chr6-72349810-3	chr6	72349737	72349937	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	2520.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	12.92	10.06	13.69	10.05	15.55	14.74	16.94	15.81	6.1	11.55	16.08	13.78
Merged-chr5-29972972-3	chr5	29972870	29973070	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40144.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	14.13	20.63	9.7	13.67	15.55	23.83	12.62	8.05	18.88	11.05	21.61	14.41
Merged-chr2-166430117-3	chr2	166430029	166430229	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17322.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	11.71	11.57	27.95	21.72	11.05	14.74	8.97	18.53	11.21	12.05	24.62	17.23
Merged-chr4-133185424-3	chr4	133185342	133185542	+	879.877808	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 3 of 8)	intron (NM_153423, intron 3 of 8)	-10213.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	7.67	10.82	21.11	9.65	19.23	29.48	11.63	9.95	41.3	31.13	18.59	9.4
Merged-chr2-157095394-4	chr2	157095271	157095471	+	879.867859	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177439, intron 5 of 5)	intron (NM_001177439, intron 5 of 5)	8316.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	15.75	12.32	8.56	14.48	9.0	8.47	6.64	4.88	16.92	11.05	8.54	11.59
Merged-chr3-126690834-3	chr3	126690734	126690934	+	879.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	93883.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.67	7.29	13.69	4.42	14.32	14.74	10.63	11.72	25.57	23.6	15.07	6.58
Merged-chr7-19669599-3	chr7	19669503	19669703	+	879.85553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4317.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	17.77	15.59	11.41	12.07	19.23	12.54	9.97	18.22	25.96	17.07	20.6	8.14
Merged-chr5-105694217-3	chr5	105694205	105694405	+	879.841675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5664.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	8.88	4.28	9.13	10.05	13.5	3.76	2.66	11.69	7.28	8.54	8.54	12.22
Merged-chr10-57603105-3	chr10	57603019	57603219	+	879.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28862.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	16.96	8.3	10.84	20.51	13.5	24.15	7.64	13.6	15.93	15.06	16.58	14.41
Merged-chr1-64197855-3	chr1	64197740	64197940	+	879.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76451.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.86	10.82	14.26	10.86	4.91	13.8	6.31	9.95	30.68	21.59	15.58	13.78
Merged-chr11-77371359-3	chr11	77371252	77371452	+	879.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	23072.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	18.98	17.36	34.23	29.76	14.73	15.05	21.26	29.13	9.05	1.51	24.12	6.58
Merged-chr11-98121915-3	chr11	98121793	98121993	+	879.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028149, intron 2 of 14)	intron (NM_028149, intron 2 of 14)	27723.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	18.98	7.8	9.7	10.46	17.18	17.87	6.31	13.09	22.42	12.05	16.08	10.34
Merged-chr13-45101955-3	chr13	45101826	45102026	+	879.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99830.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	15.75	18.11	6.85	7.64	22.91	39.51	8.64	15.48	34.22	22.59	25.63	7.83
Merged-chr3-32398608-3	chr3	32398503	32398703	+	879.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32938.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	13.73	11.07	11.41	15.28	6.95	21.01	11.63	7.6	16.52	15.57	13.06	13.78
Merged-chr1-66650196-3	chr1	66650081	66650281	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-50650.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	20.19	16.35	34.23	18.1	6.95	21.01	7.64	9.28	20.85	8.54	14.57	6.89
Merged-chr8-105500063-3	chr8	105499965	105500165	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3163.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	18.57	9.81	19.97	6.84	15.14	10.03	4.32	12.17	16.13	14.06	16.58	8.46
Merged-chr13-58543359-3	chr13	58543283	58543483	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67494.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	5.65	8.55	14.83	4.42	9.82	7.53	4.32	11.5	13.77	15.57	25.63	9.08
Merged-chr6-72884953-3	chr6	72884850	72885050	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	MIRc|SINE|MIR	14342.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	15.75	10.82	7.99	29.36	14.73	8.47	4.65	17.66	10.82	8.54	12.56	9.08
Merged-chr3-27217203-2	chr3	27217079	27217279	+	879.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	34175.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.46	1.51	9.13	3.22	15.96	11.92	4.65	7.32	16.33	7.03	10.05	8.14
Merged-chr3-88651823-3	chr3	88651737	88651937	+	879.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181817)	TTS (NM_181817)	1305.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	12.92	10.31	10.27	17.29	17.18	21.64	7.64	13.01	14.16	14.06	15.58	13.47
Merged-chr11-69432285-2	chr11	69432174	69432374	+	879.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-18599.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.85	7.04	2.85	5.63	11.05	16.93	3.32	8.86	20.65	18.08	12.56	10.96
Merged-chr5-72820795-3	chr5	72820685	72820885	+	879.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47663.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	12.52	8.8	9.7	10.86	26.59	28.22	8.64	10.26	15.34	16.57	16.58	8.46
Merged-chr2-28537154-1	chr2	28537054	28537254	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	3690.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	5.25	17.61	28.52	13.67	8.18	14.11	1.33	4.49	11.6	5.52	8.04	4.39
Merged-chr4-134703846-3	chr4	134703759	134703959	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_207237, exon 1 of 12)	5' UTR (NM_207237, exon 1 of 12)	431.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	10.5	9.06	8.56	8.45	14.32	20.7	17.27	9.81	13.77	19.58	12.56	12.84
Merged-chrX-109147277-3	chrX	109147175	109147375	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	L1MD3|LINE|L1	-49481.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	21.0	8.3	5.7	10.46	33.14	28.22	14.62	19.09	23.21	12.55	26.63	14.41
Merged-chr11-115477600-3	chr11	115477501	115477701	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	1934.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	25.04	13.33	9.7	6.44	10.23	14.42	6.98	41.07	13.77	10.54	13.57	11.59
Merged-chr19-36792801-3	chr19	36792691	36792891	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41441.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	10.09	8.05	4.56	9.65	15.96	15.05	14.28	14.22	23.6	21.59	39.7	19.42
Merged-chr3-132169205-2	chr3	132169084	132169284	+	879.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83892.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.23	3.02	14.83	4.02	18.41	15.99	9.3	24.5	10.62	13.56	14.57	6.89
Merged-chr7-64065030-1	chr7	64064930	64065130	+	879.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-88805.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	2.02	5.79	6.85	5.63	18.0	4.39	8.3	8.97	2.56	4.02	5.53	2.51
Merged-chr8-88200227-3	chr8	88200107	88200307	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164497, exon 2 of 13)	exon (NM_001164497, exon 2 of 13)	994.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	11.71	11.32	6.85	20.11	14.32	17.25	15.94	11.47	12.19	10.54	13.06	11.28
Merged-chr18-61040032-3	chr18	61039922	61040122	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3823.0	NM_009880	12590.0	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	11.71	10.56	9.13	9.65	6.55	11.92	13.29	11.69	17.51	16.07	11.05	12.53
Merged-chr12-52319303-3	chr12	52319225	52319425	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	161284.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	15.75	6.79	17.11	18.5	8.59	2.51	7.97	17.33	26.16	13.56	32.66	7.52
Merged-chr3-144110909-2	chr3	144110797	144110997	+	879.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91435.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	2.42	1.51	17.11	4.02	10.23	6.9	9.3	11.86	17.7	7.03	18.59	22.56
Merged-chr5-38038463-2	chr5	38038360	38038560	+	879.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	-770.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	3.23	12.58	15.4	8.45	6.95	8.78	9.3	10.85	6.1	10.54	6.03	3.76
Merged-chr8-79375061-3	chr8	79374959	79375159	+	879.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	MIRb|SINE|MIR	24409.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	11.31	19.12	15.4	13.67	9.41	12.54	8.97	17.3	19.87	18.08	14.57	10.96
Merged-chr12-76016839-3	chr12	76016743	76016943	+	879.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005510, intron 66 of 115)	LTR55|LTR|ERVL?	107740.0	NR_039560	100628610.0		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	15.75	13.33	6.85	10.46	9.82	12.86	4.98	15.93	13.37	7.53	23.11	10.02
Merged-chr11-95503872-2	chr11	95503803	95504003	+	879.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10662.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	13.73	13.58	9.13	12.07	6.55	7.53	8.3	5.27	6.1	4.02	3.52	4.39
Merged-chr17-17393491-3	chr17	17393374	17393574	+	879.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025934, exon 10 of 10)	exon (NM_025934, exon 10 of 10)	-9212.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	21.8	12.32	14.83	10.46	15.96	20.38	3.32	17.69	31.47	11.05	19.09	12.84
Merged-chr13-75822685-2	chr13	75822582	75822782	+	879.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-17203.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	8.88	12.07	16.54	17.29	16.77	11.92	9.3	12.17	0.0	1.0	0.5	2.19
Merged-chr10-126502543-3	chr10	126502443	126502643	+	879.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207848.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	44.01	43.51	77.01	70.38	60.55	29.79	48.83	73.04	9.24	13.56	17.08	7.21
Merged-chr10-118795214-3	chr10	118795111	118795311	+	879.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73692.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.46	8.3	14.83	11.66	27.0	27.91	27.24	34.18	41.89	24.1	34.67	16.6
Merged-chr19-46522062-3	chr19	46521979	46522179	+	879.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	20431.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.27	6.79	21.68	4.83	16.77	6.27	8.64	11.05	16.72	14.06	20.1	15.04
Merged-chr15-77832764-3	chr15	77832655	77832855	+	879.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9420.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	9.29	10.56	12.55	15.28	20.46	30.42	11.96	12.03	15.54	14.56	11.56	13.47
Merged-chr3-117995581-3	chr3	117995489	117995689	+	879.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126653.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	12.52	11.07	10.27	9.65	6.55	34.81	20.93	11.58	36.78	45.69	19.6	10.65
Merged-chr17-47594284-3	chr17	47594166	47594366	+	879.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 3 of 6)	intron (NM_001081635, intron 3 of 6)	799.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	11.71	11.82	23.39	4.83	6.55	12.86	2.33	9.7	11.41	14.06	10.05	10.34
Merged-chr1-37478070-3	chr1	37477947	37478147	+	879.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1MC|LINE|L1	10558.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	12.52	7.04	14.83	14.48	29.86	40.45	26.57	33.53	37.37	25.11	39.19	25.37
Merged-chr4-43394680-3	chr4	43394577	43394777	+	879.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-11825.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	14.13	11.82	33.66	12.07	11.05	11.29	4.98	24.9	13.77	16.57	13.06	4.7
Merged-chr10-24823978-4	chr10	24823875	24824075	+	879.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134005, intron 4 of 24)	intron (NM_134005, intron 4 of 24)	12220.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	9.69	6.29	3.42	7.64	6.55	17.87	10.96	8.36	16.52	30.63	15.58	11.59
Merged-chr5-137293475-3	chr5	137293364	137293564	+	879.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106196)	promoter-TSS (NR_106196)	-316.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	25.84	19.37	11.41	11.26	22.91	22.58	12.62	15.73	24.19	21.09	11.56	10.34
Merged-chr7-114509036-2	chr7	114508936	114509136	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 7 of 15)	intron (NM_011055, intron 7 of 15)	53936.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	14.13	6.54	12.55	3.22	4.09	18.19	2.66	4.57	21.44	10.54	18.09	2.51
Merged-chr4-66828862-3	chr4	66828777	66828977	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021297, intron 1 of 2)	intron (NM_021297, intron 1 of 2)	1326.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	8.88	9.81	10.27	8.04	27.0	18.5	17.27	20.3	32.45	33.14	50.25	16.29
Merged-chr3-103021469-2	chr3	103021364	103021564	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	918.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	24.63	11.32	13.12	9.25	15.14	22.89	17.94	12.81	22.62	20.59	26.63	19.42
Merged-chr17-74711017-2	chr17	74710931	74711131	+	879.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6719.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	4.44	4.28	6.85	2.01	4.91	13.48	3.65	7.4	67.27	73.31	52.76	58.27
Merged-chr2-5797946-1	chr2	5797846	5798046	+	879.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47088.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	1.21	2.52	2.28	4.83	9.41	8.47	13.29	12.42	1.77	3.51	3.01	5.64
Merged-chr9-55149266-3	chr9	55149172	55149372	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346657)	promoter-TSS (NM_001346657)	-97.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	17.36	15.59	6.28	11.66	17.59	19.44	9.3	12.98	10.82	20.08	20.6	15.66
Merged-chr10-93799737-2	chr10	93799618	93799818	+	879.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31837.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	2.42	6.29	2.28	8.04	1.64	5.96	5.65	7.43	47.4	20.59	20.6	19.42
Merged-chr5-31942817-2	chr5	31942688	31942888	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-193684.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.65	11.82	17.11	12.47	12.27	10.98	7.31	17.07	1.18	0.5	1.0	0.0
Merged-chrY-90828904-2	chrY	90828809	90829009	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	10497.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	4.44	7.29	11.98	4.42	5.73	13.17	11.29	3.11	0.98	2.51	4.52	3.76
Merged-chr1-64533637-3	chr1	64533542	64533742	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037726, intron 1 of 6)	CpG	838.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	14.13	18.61	15.97	14.88	10.23	14.74	8.97	8.38	16.33	16.07	10.05	8.14
Merged-chr14-31458690-3	chr14	31458585	31458785	+	879.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22585.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	13.33	10.06	21.68	12.87	12.27	14.42	8.3	24.59	11.8	13.56	27.64	15.66
Merged-chr5-134555683-3	chr5	134555567	134555767	+	879.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3233.0	NM_009990	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	15.75	17.86	30.8	23.73	12.68	9.72	8.97	16.26	25.57	8.54	14.57	11.28
Merged-chr12-110703317-4	chr12	110703201	110703401	+	879.44165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6906.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	8.88	8.8	2.85	9.65	4.09	5.33	9.3	11.86	14.75	9.54	15.07	10.65
Merged-chrY-259239-3	chrY	259129	259329	+	879.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12C|LTR|ERVK	53079.0	NR_126545	69438.0		NR_126545	ENSMUSG00000101796	1700020D14Rik	-	RIKEN cDNA 1700020D14 gene	ncRNA	7.67	15.09	6.28	17.29	7.77	4.08	10.63	8.97	9.24	9.54	11.56	15.98
Merged-chr4-86686729-1	chr4	86686629	86686829	+	879.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16670.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.62	2.01	2.28	1.61	15.55	8.78	9.63	13.79	7.87	11.55	5.02	4.7
Merged-chr12-8496892-13	chr12	8496809	8497009	+	879.391052	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007483)	TTS (NM_007483)	3100.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	13.33	13.58	11.41	6.84	6.95	10.35	5.98	17.22	15.93	21.09	10.55	13.16
Merged-chr6-114883609-3	chr6	114883512	114883712	+	879.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	38209.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	8.48	11.32	13.12	8.04	18.82	14.74	12.29	16.23	15.93	6.53	15.58	14.72
Merged-chr10-70213827-3	chr10	70213722	70213922	+	879.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304739, intron 1 of 2)	(T)n|Simple_repeat|Simple_repeat	9158.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	9.69	15.34	16.54	10.46	11.45	3.76	13.29	13.54	17.31	9.04	9.55	18.17
Merged-chr2-57297707-3	chr2	57297594	57297794	+	879.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	59312.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	10.5	13.58	6.28	5.63	12.68	37.0	11.29	10.68	29.31	20.08	28.14	9.71
Merged-chr19-32249921-3	chr19	32249764	32249964	+	879.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-38851.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.48	6.04	6.28	17.7	13.91	10.66	11.96	16.96	8.46	9.54	12.06	15.35
Merged-chr2-58801354-3	chr2	58801253	58801453	+	879.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46169.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.44	7.29	19.4	16.49	19.64	11.29	14.28	21.67	11.01	14.06	20.6	9.4
Merged-chr17-36839173-3	chr17	36839045	36839245	+	879.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025599, intron 2 of 9)	Lx4A|LINE|L1	1999.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	17.77	19.37	23.96	8.04	9.41	10.66	3.65	9.53	15.14	11.05	17.59	11.9
Merged-chr11-6465292-2	chr11	6465204	6465404	+	879.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10772.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	15.75	7.8	16.54	18.5	4.09	2.51	1.0	0.53	42.68	36.65	20.1	17.54
Merged-chr17-30007157-2	chr17	30007110	30007310	+	879.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	2171.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.85	12.07	14.83	7.24	2.86	9.41	2.99	2.97	10.42	8.03	11.05	4.39
Merged-chr10-46107503-3	chr10	46107404	46107604	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137244.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	7.27	6.29	11.41	12.07	23.73	18.5	20.59	19.29	19.28	29.12	23.62	6.27
Merged-chr1-106037116-3	chr1	106037033	106037233	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	46727.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	11.71	8.8	13.69	11.66	23.73	12.23	8.64	18.95	23.41	16.57	27.64	12.53
Merged-chr4-95084133-1	chr4	95084033	95084233	+	879.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31911.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.27	5.03	9.13	0.4	9.0	13.8	9.97	17.13	6.69	6.53	10.05	7.21
Merged-chr6-86793218-1	chr6	86793118	86793318	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	366.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	14.54	21.38	12.55	6.44	9.41	5.64	8.64	7.6	10.82	8.03	5.53	4.07
Merged-chr10-122614932-3	chr10	122614836	122615036	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33403.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	14.54	7.55	23.39	19.71	27.0	18.19	25.58	33.95	35.01	15.06	67.84	40.1
Merged-chr10-125265184-1	chr10	125265084	125265284	+	879.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	B3|SINE|B2	43632.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.25	3.77	2.85	5.23	7.36	4.7	9.63	9.06	6.1	3.51	17.08	6.27
Merged-chr13-48516108-3	chr13	48516000	48516200	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2664.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	7.27	12.83	15.4	12.07	9.82	11.6	9.63	16.4	17.9	9.54	6.03	6.58
Merged-chr4-139575439-3	chr4	139575431	139575631	+	879.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001205173, exon 1 of 9)	exon (NM_001205173, exon 1 of 9)	811.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	7.67	8.8	9.13	8.85	4.5	7.84	2.66	5.69	11.41	17.57	10.05	12.22
Merged-chr7-122415598-3	chr7	122415497	122415697	+	879.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	126472.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	14.54	8.8	27.95	32.98	10.23	14.74	13.95	17.8	13.37	24.6	15.07	18.8
Merged-chr17-3102528-3	chr17	3102445	3102645	+	879.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12427.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	7.67	18.11	13.12	8.85	23.32	17.25	24.25	15.17	17.7	20.08	25.63	19.42
Merged-chr19-29448542-3	chr19	29448442	29448642	+	879.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 4 of 5)	RLTR14-int|LTR|ERV1	37623.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.85	8.05	6.85	20.91	20.46	17.25	20.26	27.2	29.7	14.56	35.17	15.66
Merged-chr15-53196509-3	chr15	53196409	53196609	+	879.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	149674.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	26.65	20.37	11.98	14.48	11.45	28.54	17.27	13.23	12.78	17.07	15.07	7.83
Merged-chr9-65577008-3	chr9	65576950	65577150	+	879.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	3037.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.06	8.8	26.24	12.47	10.23	2.2	10.96	8.83	13.77	11.55	12.06	10.65
Merged-chrX-96227249-2	chrX	96227150	96227350	+	879.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-12676.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	14.54	6.54	7.42	27.75	13.91	6.27	4.32	13.43	12.39	7.03	6.53	6.89
Merged-chr13-23583596-3	chr13	23583579	23583779	+	879.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178194)	TTS (NM_178194)	2077.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	9.69	7.04	10.27	11.66	7.77	17.25	4.32	4.68	8.46	8.03	15.07	11.28
Merged-chr6-50144854-1	chr6	50144754	50144954	+	879.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	33994.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	8.88	6.04	3.42	4.83	13.09	8.47	6.64	18.56	6.29	10.54	5.53	5.33
Merged-chr18-70568942-3	chr18	70568853	70569053	+	879.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001311071, exon 1 of 3)	exon (NM_001311071, exon 1 of 3)	661.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	11.31	12.32	7.99	20.11	19.23	17.25	14.62	13.79	16.72	21.59	24.12	7.21
Merged-chr1-80453219-3	chr1	80453143	80453343	+	879.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	7311.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	8.08	6.04	16.54	10.86	33.14	12.86	28.9	22.09	23.41	19.58	22.61	17.54
Merged-chr17-25282310-3	chr17	25282202	25282402	+	879.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31B2|LTR|ERVK	-7992.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	7.27	14.09	14.83	9.65	21.27	19.76	8.97	17.61	15.93	15.57	16.08	11.28
Merged-chr4-132336036-3	chr4	132335959	132336159	+	879.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133878, intron 4 of 9)	intron (NM_133878, intron 4 of 9)	-6521.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	21.8	23.39	11.41	6.84	13.5	12.54	12.29	7.74	41.89	20.08	28.64	26.63
Merged-chr13-105294228-3	chr13	105294108	105294308	+	879.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 1 of 7)	CpG	277.0	NM_001360890	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	10.5	9.56	5.13	16.09	6.95	14.42	18.6	12.87	9.05	14.06	20.1	10.65
Merged-chr1-167618520-1	chr1	167618420	167618620	+	879.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159731, intron 1 of 8)	intron (NM_001159731, intron 1 of 8)	255.0	NM_001159731	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	3.23	3.02	0.0	0.8	8.59	11.92	19.27	13.32	1.38	3.01	0.5	3.76
Merged-chr7-3712522-2	chr7	3712436	3712636	+	879.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011095)	TTS (NM_011095)	7846.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	2.83	1.51	2.28	0.0	8.59	18.5	5.98	4.71	18.88	22.09	17.08	10.65
Merged-chr8-72350947-2	chr8	72350843	72351043	+	879.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31881.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.62	8.8	21.11	11.66	15.96	24.15	22.59	30.2	9.05	6.53	7.54	5.33
Merged-chr16-11352116-2	chr16	11352012	11352212	+	879.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 3 of 20)	intron (NM_028964, intron 3 of 20)	29208.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	11.31	9.31	10.27	3.22	8.18	2.82	7.31	10.79	3.54	5.02	4.02	2.51
Merged-chr5-81107604-3	chr5	81107478	81107678	+	879.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	85985.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.04	4.78	16.54	11.26	15.55	10.66	15.94	21.28	17.11	9.04	18.09	8.46
Merged-chr4-83274354-3	chr4	83274250	83274450	+	879.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49839.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	14.54	7.8	7.99	16.49	11.05	5.64	17.61	13.18	13.96	14.06	17.08	9.71
Merged-chr11-72660560-3	chr11	72660446	72660646	+	879.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025985, intron 1 of 5)	PB1D9|SINE|Alu	-29456.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	21.4	17.36	15.97	11.66	9.41	8.78	7.31	13.65	23.41	7.03	10.05	14.72
Merged-chr14-102832523-2	chr14	102832440	102832640	+	879.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	150092.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	8.88	4.53	7.42	6.84	9.82	10.03	7.64	9.06	13.18	11.55	18.09	12.22
Merged-chr2-129903592-2	chr2	129903494	129903694	+	879.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102135.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	2.42	3.27	1.14	4.02	11.05	5.64	10.3	14.92	12.98	17.57	17.08	11.28
Merged-chr2-112449334-3	chr2	112449238	112449438	+	879.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5687.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	14.13	6.79	2.85	15.69	26.59	15.05	9.63	15.36	7.47	11.55	19.6	9.08
Merged-chr19-44144475-3	chr19	44144374	44144574	+	879.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028607, intron 2 of 4)	intron (NM_028607, intron 2 of 4)	1972.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	12.11	11.82	13.69	22.12	15.96	13.48	12.62	13.18	11.21	8.54	14.57	9.71
Merged-chr4-62664019-3	chr4	62663916	62664116	+	879.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-9958.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	7.67	13.33	9.13	12.87	9.41	11.29	8.3	14.33	13.37	14.06	20.1	15.66
Merged-chr2-164075220-3	chr2	164075128	164075328	+	879.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	1050.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	19.38	12.58	9.13	10.05	16.36	21.95	14.95	17.41	18.88	15.06	23.11	9.71
Merged-chr1-72963597-1	chr1	72963497	72963697	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52302.0	NM_009407	21958.0	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	3.23	0.0	0.0	0.0	7.36	7.53	13.62	9.81	0.79	0.5	1.0	0.31
Merged-chr4-59878239-1	chr4	59878139	59878339	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	36817.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	7.67	4.78	5.7	10.05	10.64	0.63	6.98	8.72	3.93	5.02	5.02	3.13
Merged-chr5-118097605-1	chr5	118097505	118097705	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	57853.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	8.08	3.02	7.42	5.63	7.36	14.11	9.97	13.54	6.1	0.5	10.05	8.77
Merged-chr9-64021210-1	chr9	64021110	64021310	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008542, exon 1 of 4)	5' UTR (NM_008542, exon 1 of 4)	849.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	2.83	4.53	5.13	4.83	8.59	4.39	3.65	10.21	6.88	9.04	4.02	7.21
Merged-chr17-87540202-1	chr17	87540102	87540302	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-93267.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.0	4.02	14.26	11.66	5.73	3.45	3.32	13.93	0.59	4.02	3.52	5.64
Merged-chr18-67270172-3	chr18	67270063	67270263	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19060.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	19.79	10.06	3.99	8.04	24.14	17.25	9.3	15.76	18.49	21.09	28.14	15.35
Merged-chr7-127121845-1	chr7	127121745	127121945	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	184.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	1.62	1.51	2.28	3.22	2.86	6.27	2.99	4.18	5.7	7.53	3.01	4.39
Merged-chr6-31085099-1	chr6	31084999	31085199	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22006.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	1.21	2.52	6.28	4.02	1.64	7.84	4.98	12.64	3.93	3.01	4.02	1.57
Merged-chrX-17566570-2	chrX	17566465	17566665	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313746, intron 3 of 4)	intron (NM_001313746, intron 3 of 4)	5442.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	4.85	2.01	5.13	13.67	14.73	5.02	2.66	16.82	11.8	14.06	10.05	3.13
Merged-chr12-111429540-1	chr12	111429440	111429640	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12095.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	8.08	11.82	9.13	9.65	6.55	15.99	3.99	6.42	14.16	13.56	8.54	10.34
Merged-chr6-52825724-3	chr6	52825619	52825819	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	83901.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	12.11	9.56	4.56	11.26	16.77	28.54	22.59	21.76	20.06	30.63	18.59	9.4
Merged-chr13-85489893-3	chr13	85489795	85489995	+	878.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200409.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	22.61	12.07	9.13	12.07	13.09	14.74	15.61	26.05	22.62	23.1	13.06	19.74
Merged-chr14-32784601-2	chr14	32784516	32784716	+	878.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1347.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	13.73	4.78	21.68	18.9	12.27	10.35	6.31	14.61	18.1	10.04	16.08	10.02
Merged-chr1-171019810-3	chr1	171019701	171019901	+	878.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144559, intron 2 of 4)	intron (NM_144559, intron 2 of 4)	875.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	10.5	6.54	16.54	8.45	20.05	21.01	9.63	13.21	19.47	27.62	26.63	23.49
Merged-chr10-13866959-3	chr10	13866858	13867058	+	878.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	T-rich|Low_complexity|Low_complexity	1999.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	8.88	11.07	36.51	18.1	11.86	8.47	0.0	5.97	17.31	6.53	17.08	8.46
Merged-chr2-129585812-3	chr2	129585699	129585899	+	878.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	19.79	11.07	8.56	10.86	20.05	23.2	27.9	17.69	16.13	24.1	25.63	10.02
Merged-chr17-45619120-3	chr17	45619011	45619211	+	878.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17009.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	16.15	20.88	15.4	12.87	11.45	13.8	6.98	9.84	29.31	22.09	20.6	8.46
Merged-chr3-95707695-2	chr3	95707595	95707795	+	878.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19778.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	6.06	6.79	10.27	4.02	15.14	15.99	4.98	10.32	15.14	12.55	14.57	16.92
Merged-chr9-58248970-3	chr9	58248890	58249090	+	878.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008884, intron 1 of 7)	intron (NM_008884, intron 1 of 7)	796.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	16.96	9.06	27.95	6.03	13.91	15.68	8.3	13.29	13.77	13.56	14.57	6.89
Merged-chr11-69058469-3	chr11	69058384	69058584	+	878.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1291.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	12.92	6.54	14.83	17.7	14.73	12.54	6.64	7.93	19.87	28.12	21.61	5.33
Merged-chr13-44484518-2	chr13	44484433	44484633	+	878.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44806.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.23	2.01	3.42	1.61	6.55	11.92	5.98	8.38	10.82	11.05	17.59	9.71
Merged-chr9-44460806-2	chr9	44460707	44460907	+	878.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6040.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	6.46	3.77	3.42	4.42	8.59	23.52	3.99	9.5	16.33	12.55	21.1	11.59
Merged-chr8-11107448-1	chr8	11107348	11107548	+	878.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99018.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.65	3.02	11.41	6.44	10.64	7.53	24.25	25.09	7.87	5.02	5.02	6.58
Merged-chr2-152671139-2	chr2	152671025	152671225	+	878.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	1664.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	4.85	9.81	4.56	4.02	11.05	8.47	12.95	7.32	15.54	5.52	14.57	7.21
Merged-chr6-140767859-3	chr6	140767753	140767953	+	878.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140968.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	9.29	11.57	5.7	12.87	16.36	11.6	10.3	15.7	13.77	14.06	12.56	11.59
Merged-chr5-35743414-1	chr5	35743314	35743514	+	878.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3427.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	1.62	2.26	3.42	3.22	4.91	0.94	0.33	2.52	23.41	12.55	23.62	10.34
Merged-chr10-121507516-3	chr10	121507416	121507616	+	878.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31266.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	14.54	4.53	5.7	8.85	14.73	11.6	5.65	13.04	25.18	17.07	23.62	20.99
Merged-chr2-71376684-2	chr2	71376636	71376836	+	878.8125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9182.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.25	0.75	2.28	2.82	13.5	10.98	6.31	7.88	21.64	22.59	17.59	14.41
Merged-chr10-123063081-3	chr10	123062979	123063179	+	878.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	13426.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	16.15	4.78	15.4	15.28	20.05	7.21	14.62	29.33	14.75	11.05	12.06	9.08
Merged-chr1-180390995-3	chr1	180390885	180391085	+	878.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60436.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	12.11	6.04	15.4	13.67	10.23	7.84	2.66	13.35	12.59	7.53	17.59	12.22
Merged-chr1-191403329-3	chr1	191403230	191403430	+	878.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6289.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	17.77	14.84	22.25	17.7	11.45	18.81	15.28	20.05	15.54	8.54	9.55	8.46
Merged-chr12-16532617-1	chr12	16532517	16532717	+	878.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57153.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	6.46	2.52	5.13	5.23	7.36	11.29	15.28	15.45	4.72	3.51	3.52	1.25
Merged-chr10-122564666-3	chr10	122564540	122564740	+	878.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040616)	TTS (NR_040616)	5251.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	11.71	7.29	11.98	16.89	7.36	19.44	27.24	25.88	26.55	9.04	34.17	16.6
Merged-chr2-119173020-2	chr2	119172931	119173131	+	878.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177157)	TTS (NM_177157)	-1478.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	9.69	12.32	14.26	14.88	9.41	13.48	10.3	17.69	5.51	3.51	6.53	4.39
Merged-chr7-113378510-3	chr7	113378398	113378598	+	878.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9159.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	12.92	13.33	25.67	12.07	17.18	23.52	13.95	24.76	17.11	16.57	27.64	9.4
Merged-chr3-152340262-3	chr3	152340100	152340300	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162375, intron 1 of 13)	CpG	207.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	2.83	8.05	9.13	10.46	20.05	15.05	12.29	10.82	18.1	10.54	8.04	17.23
Merged-chr6-83656178-3	chr6	83656105	83656305	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016751)	promoter-TSS (NM_016751)	-89.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	11.31	4.02	19.4	22.12	18.0	12.23	43.85	54.17	19.47	12.55	24.12	17.23
Merged-chr11-69257998-3	chr11	69257888	69258088	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20966.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	11.31	17.61	13.69	16.49	13.09	17.87	8.97	12.59	20.46	26.11	24.12	12.84
Merged-chr12-84614215-3	chr12	84614124	84614324	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	3242.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	8.08	10.06	4.56	10.86	23.32	32.3	11.63	22.04	21.83	11.55	17.08	11.9
Merged-chr7-19696625-1	chr7	19696525	19696725	+	878.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1773.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	4.44	2.01	2.28	0.8	11.05	2.82	10.3	14.1	5.7	7.53	6.03	5.95
Merged-chr14-33857157-3	chr14	33857037	33857237	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-45854.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	8.88	6.79	7.42	16.09	24.14	21.32	12.29	36.31	21.24	22.09	26.13	13.47
Merged-chr16-33837444-1	chr16	33837344	33837544	+	878.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7779.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	6.46	3.52	10.27	2.82	11.86	1.88	3.99	7.4	4.72	10.54	3.52	4.7
Merged-chr8-85841581-3	chr8	85841484	85841684	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028007)	promoter-TSS (NM_028007)	582.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	27.05	9.31	17.11	13.27	13.5	14.42	6.31	15.62	22.62	22.09	23.62	9.71
Merged-chr15-84126633-3	chr15	84126545	84126745	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3470.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	21.0	6.29	6.85	12.47	15.14	14.42	14.28	14.41	9.24	14.56	17.08	8.77
Merged-chr11-69679309-3	chr11	69679223	69679423	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030702, intron 2 of 10)	intron (NM_030702, intron 2 of 10)	2647.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	10.09	12.58	19.4	6.44	10.23	15.05	19.27	8.19	19.28	15.57	14.07	13.16
Merged-chr13-3373580-1	chr13	3373480	3373680	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-104723.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	16.56	9.06	9.7	14.08	11.05	5.64	9.63	6.2	3.34	6.03	6.53	7.83
Merged-chr9-124014367-1	chr9	124014267	124014467	+	878.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7604.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.04	3.52	2.28	3.62	9.82	3.76	8.97	9.22	1.97	3.51	2.01	1.25
Merged-chr13-47242576-2	chr13	47242473	47242673	+	878.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 6 of 7)	intron (NM_146042, intron 6 of 7)	48570.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.67	4.02	7.99	1.61	18.0	11.29	13.29	17.78	22.82	10.54	15.58	9.71
Merged-chr3-10307795-3	chr3	10307688	10307888	+	878.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6605.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.63	17.86	2.28	12.87	17.18	9.41	11.96	13.18	15.54	12.55	15.07	15.04
Merged-chr3-105899919-3	chr3	105899773	105899973	+	878.6277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-4548.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	11.71	10.82	7.42	14.48	11.45	14.74	9.3	10.82	12.59	12.55	9.55	13.78
Merged-chr11-96303292-2	chr11	96303195	96303395	+	878.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008268)	promoter-TSS (NM_008268)	-217.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	8.08	3.77	7.42	5.63	6.55	11.29	11.96	9.28	16.92	14.06	6.03	5.64
Merged-chr5-112249788-3	chr5	112249676	112249876	+	878.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021351, intron 3 of 5)	intron (NM_021351, intron 3 of 5)	2742.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	12.11	7.55	15.97	20.51	21.27	11.29	19.6	24.76	13.37	10.54	23.62	14.41
Merged-chr2-117146214-3	chr2	117146119	117146319	+	878.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25148.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	11.71	8.55	14.83	5.63	4.91	21.64	9.97	11.61	16.52	22.09	7.54	4.7
Merged-chr17-34304444-3	chr17	34304352	34304552	+	878.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1415.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	8.88	26.16	10.27	6.84	18.41	23.83	5.98	10.37	21.44	16.07	14.57	15.66
Merged-chr10-70251402-3	chr10	70251323	70251523	+	878.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	6147.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	13.33	13.08	6.28	7.24	8.59	5.96	5.31	11.24	11.8	13.56	15.58	8.46
Merged-chr2-36236604-3	chr2	36236507	36236707	+	878.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	6181.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	10.09	3.52	15.97	20.51	19.23	6.59	14.95	14.05	17.9	14.56	18.09	8.46
Merged-chr19-32665459-3	chr19	32665346	32665546	+	878.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011864, exon 13 of 13)	exon (NM_011864, exon 13 of 13)	45441.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	9.69	18.61	27.95	24.94	5.32	15.68	11.63	20.3	11.6	16.07	22.61	8.14
Merged-chr10-78090238-3	chr10	78090133	78090333	+	878.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20865.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	19.79	5.03	21.11	2.82	13.91	8.78	8.3	12.06	13.57	9.54	14.07	15.98
Merged-chr14-17428036-3	chr14	17427923	17428123	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-232937.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.44	11.82	10.84	9.25	16.36	9.41	12.62	19.88	12.98	13.56	14.57	6.27
Merged-chr3-69060277-3	chr3	69060176	69060376	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15534.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	14.94	20.88	21.68	14.08	18.0	28.54	12.95	15.06	11.01	7.03	11.56	8.14
Merged-chr18-54839231-3	chr18	54839124	54839324	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	150956.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	10.09	11.07	10.84	14.48	42.96	16.31	24.25	33.31	14.95	44.69	33.67	11.9
Merged-chr13-37218085-1	chr13	37217985	37218185	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-127260.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.62	2.52	3.42	10.86	2.05	7.84	7.31	8.86	7.47	5.02	2.01	2.19
Merged-chr13-3573952-2	chr13	3573857	3574057	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134063, exon 14 of 20)	exon (NM_134063, exon 14 of 20)	35882.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	7.27	3.77	24.53	8.85	15.14	8.15	6.64	17.55	13.77	10.54	17.08	5.33
Merged-chr8-33655443-2	chr8	33655332	33655532	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	2194.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	1.21	5.53	0.0	4.02	1.64	6.27	14.62	6.34	19.67	19.08	18.59	14.1
Merged-chr17-67196446-1	chr17	67196346	67196546	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	158013.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.25	5.28	6.85	3.22	1.64	9.09	4.65	9.56	6.29	7.53	15.58	3.13
Merged-chr4-141619074-1	chr4	141618974	141619174	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-441.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	5.65	5.79	8.56	3.62	8.18	9.09	6.31	8.02	5.7	10.54	7.03	2.51
Merged-chr7-129756723-2	chr7	129756630	129756830	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	164867.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	12.11	14.59	18.83	12.47	13.91	11.92	13.29	17.52	7.47	15.57	6.53	6.58
Merged-chr15-81534139-2	chr15	81534042	81534242	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-52072.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	13.33	8.05	7.42	6.84	11.86	24.77	12.95	6.2	31.86	39.16	30.15	17.86
Merged-chr4-136145695-2	chr4	136145579	136145779	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008321)	TTS (NM_008321)	1857.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.48	15.59	9.7	13.67	12.68	14.42	7.31	9.81	14.95	21.09	13.06	14.72
Merged-chr5-136086338-5	chr5	136086248	136086448	+	878.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	2432.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	7.27	3.52	3.42	5.23	2.05	3.14	3.65	2.3	6.29	8.54	3.01	4.39
Merged-chr19-11917555-3	chr19	11917464	11917664	+	878.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	5165.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	13.73	16.35	20.54	29.76	15.14	7.21	9.3	16.35	19.67	13.05	12.56	15.04
Merged-chr2-18087814-3	chr2	18087719	18087919	+	878.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010804, intron 3 of 22)	RMER16_Mm|LTR|ERVK	23234.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	10.5	7.55	17.68	14.48	3.68	15.05	10.3	3.17	17.11	20.08	11.05	10.34
Merged-chr4-132008844-3	chr4	132008759	132008959	+	878.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	B3A|SINE|B2	40219.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	8.08	9.81	14.26	11.26	9.41	15.37	6.64	14.89	17.9	22.59	33.67	19.11
Merged-chr9-98350768-1	chr9	98350668	98350868	+	878.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	54198.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	4.85	3.52	7.42	6.03	7.77	11.29	12.95	10.37	4.13	0.5	7.03	2.82
Merged-chr1-54925728-3	chr1	54925630	54925830	+	878.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	CpG	657.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	25.84	17.1	29.09	10.46	17.18	15.99	20.59	9.5	9.24	13.56	9.55	9.08
Merged-chr16-45666359-3	chr16	45666265	45666465	+	878.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172455, intron 12 of 17)	Lx7|LINE|L1	-12247.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	14.94	6.04	9.13	19.71	7.36	8.78	9.3	24.25	35.8	30.63	60.3	22.56
Merged-chr10-42760420-3	chr10	42760296	42760496	+	878.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1100.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	6.06	10.56	3.99	10.05	14.73	21.64	8.97	9.5	24.0	15.06	20.1	10.02
Merged-chrX-17518929-3	chrX	17518831	17519031	+	878.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53076.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	19.79	11.32	21.68	22.12	14.73	10.66	15.28	21.2	23.6	11.55	20.1	10.02
Merged-chr10-80165873-2	chr10	80165720	80165920	+	878.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2019.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	12.52	5.79	6.28	6.84	4.91	4.39	7.64	10.77	10.82	6.03	10.05	6.89
Merged-chr17-32891691-3	chr17	32891569	32891769	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-66.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	5.65	6.79	3.42	8.85	21.68	19.44	14.95	16.18	21.83	30.63	21.61	15.66
Merged-chr13-55205270-3	chr13	55205159	55205359	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-4523.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	13.73	8.3	1.14	11.26	6.95	19.13	7.31	15.98	18.88	15.06	16.08	20.68
Merged-chr9-102982615-3	chr9	102982528	102982728	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-25861.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	9.69	9.81	9.13	8.04	10.64	17.87	16.61	13.93	19.67	11.05	18.09	16.29
Merged-chr6-31065639-3	chr6	31065529	31065729	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2536.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	12.11	7.04	9.13	6.44	35.18	18.81	32.22	15.28	19.67	23.1	20.6	12.53
Merged-chr4-150860696-3	chr4	150860533	150860733	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	5563.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	17.77	4.28	10.27	11.66	4.91	12.54	10.3	9.93	13.57	18.58	18.59	11.9
Merged-chr16-21590556-1	chr16	21590456	21590656	+	878.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	104109.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.23	1.51	2.28	1.61	9.41	3.14	5.65	7.71	4.72	1.51	3.52	2.82
Merged-chr5-36998314-1	chr5	36998214	36998414	+	878.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9332.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0.0	0.5	1.14	0.0	0.82	0.63	2.66	1.68	15.74	12.05	16.58	6.27
Merged-chr6-72636256-3	chr6	72636181	72636381	+	878.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009332, intron 4 of 11)	intron (NM_009332, intron 4 of 11)	6450.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	16.56	15.85	22.25	8.04	14.73	22.58	17.27	14.24	5.9	10.54	12.06	9.4
Merged-chr11-119991427-3	chr11	119991321	119991521	+	878.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 6 of 13)	intron (NM_001037754, intron 6 of 13)	-23346.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	12.11	17.1	12.55	13.67	18.82	13.17	9.97	10.74	16.13	15.57	12.56	9.71
Merged-chr7-122010621-3	chr7	122010528	122010728	+	878.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028758, intron 3 of 16)	intron (NM_028758, intron 3 of 16)	10570.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	16.15	30.43	24.53	11.66	11.86	11.29	2.33	2.69	28.91	38.66	37.69	22.56
Merged-chr9-89237325-3	chr9	89237232	89237432	+	878.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	25948.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	11.71	6.29	17.11	15.28	17.18	23.52	14.28	16.6	16.13	14.06	24.12	16.6
Merged-chr4-148676392-2	chr4	148676297	148676497	+	878.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33080.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	6.86	8.05	4.56	1.61	11.45	11.92	5.98	6.36	38.16	41.67	66.83	12.53
Merged-chr10-13470468-3	chr10	13470377	13470577	+	878.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	3919.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	8.08	20.37	15.97	28.96	17.59	15.68	9.3	25.32	10.62	5.02	14.07	10.65
Merged-chr9-37230803-2	chr9	37230693	37230893	+	878.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	22477.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	14.94	5.03	10.27	16.49	27.41	5.02	19.6	34.88	5.31	2.51	5.02	1.88
Merged-chr10-99252555-3	chr10	99252454	99252654	+	878.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10677.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	22.61	14.09	30.23	14.48	11.05	13.8	16.61	27.2	13.77	8.54	5.53	2.82
Merged-chr17-45599566-3	chr17	45599436	45599636	+	878.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	67.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	8.48	12.32	10.84	12.07	18.0	13.8	13.29	9.03	14.95	6.53	19.09	10.65
Merged-chr11-77802768-3	chr11	77802668	77802868	+	878.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	1470.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	7.27	12.83	11.98	12.87	26.18	16.93	10.63	21.11	16.33	12.55	21.1	11.28
Merged-chr14-30200542-3	chr14	30200432	30200632	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	152954.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	12.92	8.05	16.54	5.63	16.77	16.93	4.98	11.83	15.54	15.57	17.59	12.53
Merged-chr11-44581461-3	chr11	44581393	44581593	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4824.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	28.67	27.67	29.66	27.75	37.64	34.18	30.89	34.21	10.42	8.03	8.04	4.07
Merged-chr1-36345219-3	chr1	36345108	36345308	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172652, intron 16 of 20)	intron (NM_172652, intron 16 of 20)	3550.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	1.21	8.3	7.99	9.65	15.96	13.17	20.26	20.44	32.45	22.59	17.59	14.1
Merged-chr2-60178362-3	chr2	60178260	60178460	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31576.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	13.73	11.32	17.68	10.86	10.64	19.44	8.64	6.84	19.47	18.58	18.09	14.1
Merged-chr11-97985485-3	chr11	97985381	97985581	+	878.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	965.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	14.54	10.56	5.13	7.24	12.68	6.9	7.64	9.25	13.96	23.6	24.12	7.83
Merged-chr11-53758205-3	chr11	53758094	53758294	+	878.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5460.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	12.92	12.32	14.26	8.04	20.86	11.92	6.31	4.6	21.05	25.61	18.09	13.16
Merged-chr4-48047259-3	chr4	48047167	48047367	+	878.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	CpG	1962.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	25.84	17.86	11.98	6.44	22.91	17.56	9.63	15.62	33.04	18.58	18.59	8.77
Merged-chr7-142919394-3	chr7	142919298	142919498	+	878.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19432.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	19.79	12.07	3.99	11.66	4.5	10.66	5.31	8.13	14.95	13.56	10.05	5.95
Merged-chr2-152738255-6	chr2	152738217	152738417	+	878.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010495)	TTS (NM_010495)	2066.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.44	6.79	5.7	6.03	9.41	7.53	5.98	10.43	4.13	16.57	20.1	10.34
Merged-chr8-23256008-5	chr8	23255916	23256116	+	878.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020585, intron 1 of 4)	intron (NM_020585, intron 1 of 4)	1064.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	3.63	5.79	4.56	4.83	13.91	19.44	9.3	11.27	16.33	12.55	15.58	13.78
Merged-chr19-60999798-2	chr19	60999727	60999927	+	878.0750119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	110078.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	16.96	9.31	12.55	11.66	17.18	5.02	12.62	16.49	4.33	11.05	9.55	3.13
Merged-chr12-79089636-3	chr12	79089554	79089754	+	878.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029988)	promoter-TSS (NM_029988)	16.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	15.75	11.82	4.56	10.46	15.14	16.93	24.25	8.64	10.23	20.08	15.07	14.72
Merged-chr2-93346719-3	chr2	93346596	93346796	+	878.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12209.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	17.36	14.09	17.11	26.95	13.5	10.66	21.26	13.71	9.83	12.55	9.55	12.53
Merged-chr6-57533680-3	chr6	57533509	57533709	+	878.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1817.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	8.08	9.06	7.42	7.24	4.91	10.98	9.63	9.11	8.85	8.03	9.04	8.14
Merged-chr6-99485899-1	chr6	99485799	99485999	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35094.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.23	3.02	6.28	2.82	16.36	11.29	6.31	13.26	3.74	5.52	6.53	9.71
Merged-chr11-60116106-1	chr11	60116006	60116206	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	PB1D10|SINE|Alu	11093.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	3.23	0.75	3.42	0.4	11.45	12.86	4.65	12.93	3.54	3.01	11.05	3.13
Merged-chr6-97523313-3	chr6	97523226	97523426	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-35506.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	10.5	7.29	2.85	12.07	23.32	23.52	5.98	11.52	23.8	21.59	11.56	12.53
Merged-chrX-133689044-1	chrX	133688944	133689144	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001105246)	promoter-TSS (NM_001105246)	-51.0	NM_001105246	279653.0	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	6.06	3.27	4.56	5.63	3.27	7.84	6.31	8.5	1.77	1.51	15.07	5.95
Merged-chr14-54405966-1	chr14	54405866	54406066	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	G-rich|Low_complexity|Low_complexity	3506.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	2.42	5.79	3.99	1.21	9.0	6.59	13.95	8.47	8.06	9.54	4.02	6.89
Merged-chr6-83657285-1	chr6	83657185	83657385	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1169.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.0	3.27	7.42	10.86	9.82	4.39	18.93	25.23	6.69	2.01	10.05	13.16
Merged-chr12-98773885-1	chr12	98773785	98773985	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160108, intron 1 of 6)	intron (NM_001160108, intron 1 of 6)	2863.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	3.27	10.27	4.02	6.55	2.51	7.64	9.08	3.93	4.52	3.52	3.45
Merged-chr14-70119506-2	chr14	70119385	70119585	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360404, intron 2 of 7)	intron (NM_001360404, intron 2 of 7)	19392.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	3.23	7.04	5.7	5.63	4.5	7.53	5.31	6.7	7.08	4.52	9.04	5.64
Merged-chr11-21326061-3	chr11	21325971	21326171	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290634, intron 8 of 9)	Lx8|LINE|L1	18604.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	6.86	15.34	15.97	31.77	20.46	22.26	15.61	27.67	11.8	10.54	11.56	6.89
Merged-chr6-117497331-1	chr6	117497231	117497431	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152214, intron 2 of 2)	RMER19B|LTR|ERVK	2096.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	3.23	5.03	10.27	7.24	12.68	10.35	10.3	9.67	5.31	10.54	12.06	4.39
Merged-chr8-85554542-3	chr8	85554433	85554633	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019794, intron 1 of 8)	intron (NM_019794, intron 1 of 8)	738.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	15.34	11.82	10.84	8.85	20.86	19.13	8.64	12.76	24.98	24.6	15.58	20.68
Merged-chr7-19299410-2	chr7	19299299	19299499	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8330.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	8.48	13.33	5.13	1.61	11.86	5.33	0.33	2.24	15.93	14.06	6.53	5.01
Merged-chr5-3492010-1	chr5	3491910	3492110	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51823.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	2.42	2.01	2.85	1.21	5.73	7.84	4.65	8.3	8.65	6.53	2.01	2.19
Merged-chr4-47287706-2	chr4	47287600	47287800	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 22 of 39)	intron (NM_009928, intron 22 of 39)	-65522.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.23	9.56	5.7	2.41	4.09	21.64	11.29	4.88	14.36	19.58	22.11	2.51
Merged-chr10-81384828-3	chr10	81384730	81384930	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133964, intron 1 of 4)	intron (NM_133964, intron 1 of 4)	402.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	29.88	18.36	10.84	11.66	19.64	35.43	15.94	18.06	31.86	25.11	21.61	15.98
Merged-chr11-69073041-1	chr11	69072941	69073141	+	878.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-385.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.81	4.28	2.85	6.44	4.5	5.33	1.33	2.66	7.67	2.51	1.0	3.76
Merged-chrX-42142830-3	chrX	42142708	42142908	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-6604.0	NM_001077712	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	8.88	6.04	14.83	18.1	20.05	15.05	6.98	22.07	15.34	15.06	21.61	12.53
Merged-chr12-40576573-1	chr12	40576473	40576673	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	130520.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	1.62	4.02	4.56	6.03	2.45	0.63	5.98	8.3	7.28	5.02	6.03	4.39
Merged-chr1-95613538-1	chr1	95613438	95613638	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	54056.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.25	0.5	4.56	12.07	3.27	7.84	2.33	6.34	4.52	4.52	2.01	8.77
Merged-chr2-129515967-1	chr2	129515867	129516067	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	20635.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	1.62	0.5	5.13	0.0	6.55	3.14	3.32	7.85	2.95	1.51	0.5	1.57
Merged-chr15-11396624-1	chr15	11396524	11396724	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033074, intron 2 of 18)	intron (NM_033074, intron 2 of 18)	3034.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	10.09	11.57	20.54	4.42	2.45	0.31	0.0	1.54	0.79	0.5	1.0	1.88
Merged-chr6-81440757-1	chr6	81440657	81440857	+	878.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	454906.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	1.62	2.52	1.14	1.61	0.0	0.94	1.33	0.31	10.23	6.53	4.02	9.71
Merged-chr14-32770645-1	chr14	32770545	32770745	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15318.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	6.46	6.54	17.68	7.24	10.64	4.7	5.31	8.16	8.65	7.53	5.53	6.89
Merged-chrX-36329190-1	chrX	36329090	36329290	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028894, exon 1 of 11)	exon (NM_028894, exon 1 of 11)	781.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	4.44	0.75	4.56	0.8	3.27	3.14	0.0	2.27	0.79	3.01	1.51	2.82
Merged-chr10-20839081-3	chr10	20838998	20839198	+	877.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113449.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	12.52	13.33	21.68	42.23	15.96	13.8	24.25	33.79	12.19	8.54	13.06	11.28
Merged-chr2-73338624-3	chr2	73338531	73338731	+	877.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029022)	TTS (NM_029022)	25979.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	18.17	7.29	9.13	14.08	15.14	16.31	21.59	20.24	13.77	11.05	15.58	8.77
Merged-chr9-35268553-2	chr9	35268452	35268652	+	877.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	671.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	14.54	11.32	15.97	12.07	10.64	10.98	5.31	15.34	7.28	3.01	3.01	5.95
Merged-chr13-45326154-3	chr13	45326059	45326259	+	877.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63583.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	10.9	9.06	13.69	20.91	25.36	14.11	25.24	31.71	17.7	7.03	25.12	11.9
Merged-chr13-52588023-3	chr13	52587900	52588100	+	877.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	4563.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	15.75	6.79	19.4	5.23	20.86	23.2	21.26	17.44	10.82	10.04	13.06	11.9
Merged-chr19-44373150-3	chr19	44373053	44373253	+	877.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34556.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	15.34	16.1	2.85	2.41	11.45	12.86	5.31	12.79	15.54	7.53	17.59	8.46
Merged-chr5-64861507-3	chr5	64861399	64861599	+	877.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57976.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.27	24.9	19.97	20.91	9.41	13.48	17.94	7.26	20.46	17.07	13.57	5.64
Merged-chr2-137807773-3	chr2	137807681	137807881	+	877.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-448803.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	10.09	6.54	21.11	18.5	28.23	22.89	35.21	30.59	12.19	32.13	14.57	10.02
Merged-chr7-27604881-3	chr7	27604784	27604984	+	877.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-913.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	9.29	15.85	19.97	8.85	6.14	7.84	16.94	20.66	67.07	64.27	109.04	41.35
Merged-chr7-47025630-2	chr7	47025548	47025748	+	877.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17234.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	7.27	4.53	14.83	4.02	3.68	4.7	15.28	17.64	12.78	12.55	20.1	9.4
Merged-chr11-113761847-2	chr11	113761747	113761947	+	877.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10032.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	2.42	5.79	5.7	5.63	11.05	17.25	7.64	6.93	13.37	15.57	23.11	11.9
Merged-chr10-60933006-2	chr10	60932908	60933108	+	877.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5124.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	4.44	2.77	5.7	2.41	8.18	12.23	5.98	7.88	20.06	24.1	22.11	12.22
Merged-chr12-111426237-3	chr12	111426103	111426303	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028807, exon 8 of 13)	exon (NM_028807, exon 8 of 13)	8758.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	18.57	17.61	16.54	10.86	13.09	26.34	8.64	14.64	18.1	24.6	18.59	15.66
Merged-chr1-81059049-3	chr1	81058940	81059140	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17910.0	NM_001356399	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	12.52	6.29	10.84	19.71	11.45	18.5	16.28	32.64	14.55	18.58	21.1	15.66
Merged-chr13-5769883-3	chr13	5769786	5769986	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88206.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.06	7.8	13.12	8.85	20.86	26.65	17.61	16.01	14.36	14.56	21.1	9.4
Merged-chr9-121928674-3	chr9	121928585	121928785	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	-8590.0	NR_033553	69430.0	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	16.96	18.86	30.8	13.67	4.09	3.45	6.31	6.98	11.8	3.51	11.56	12.53
Merged-chr7-128062656-3	chr7	128062559	128062759	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082960)	promoter-TSS (NM_001082960)	19.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	21.4	11.57	26.81	21.72	29.46	25.4	10.96	25.49	22.82	9.04	29.65	15.35
Merged-chr3-127625458-3	chr3	127625372	127625572	+	877.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7664.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	14.13	13.08	5.7	7.64	16.77	13.17	9.3	14.94	12.19	15.57	21.61	6.58
Merged-chr2-170507927-3	chr2	170507831	170508031	+	877.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-3299.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	23.02	22.64	23.96	12.87	17.18	15.37	5.98	20.75	23.01	15.57	14.57	12.84
Merged-chr13-19874989-2	chr13	19874887	19875087	+	877.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-50730.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	6.86	10.56	13.12	6.03	10.64	19.13	7.97	10.93	1.38	1.0	2.51	1.57
Merged-chr2-52483701-3	chr2	52483599	52483799	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-58825.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	16.96	9.81	15.97	10.46	13.91	24.15	14.62	16.35	21.44	15.57	8.04	8.14
Merged-chr10-67712050-3	chr10	67711934	67712134	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140075.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	6.86	9.06	6.28	10.86	15.96	11.29	10.96	18.06	23.41	10.54	17.59	6.27
Merged-chr18-57581812-3	chr18	57581721	57581921	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-29424.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	13.33	9.31	18.25	27.75	11.05	9.41	6.98	24.62	27.73	15.06	31.15	16.92
Merged-chr12-120028358-3	chr12	120028270	120028470	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82408.0	NM_001160385	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	5.65	7.29	21.68	8.45	15.14	23.2	21.92	19.77	20.46	22.59	20.1	15.04
Merged-chrX-166946157-3	chrX	166946024	166946224	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124246.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	9.69	9.81	13.69	9.25	20.05	38.26	18.6	8.3	31.08	28.12	36.18	18.48
Merged-chr1-87901160-1	chr1	87901060	87901260	+	877.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	-46861.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	6.46	3.52	7.42	5.63	16.36	10.03	8.3	21.06	3.34	9.04	6.53	8.77
Merged-chr18-69662364-3	chr18	69662264	69662464	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-263195.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	12.11	7.29	16.54	8.45	16.36	15.37	8.3	20.89	15.74	15.57	26.63	5.64
Merged-chr11-16507616-3	chr11	16507500	16507700	+	877.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011343, intron 1 of 3)	intron (NM_011343, intron 1 of 3)	884.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	7.27	9.31	8.56	13.67	7.36	14.42	17.61	14.69	18.1	12.55	13.57	16.6
Merged-chr15-81046313-3	chr15	81046193	81046393	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	58754.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	14.94	8.05	29.09	6.44	6.95	14.42	7.64	9.62	4.13	11.55	14.57	12.22
Merged-chr14-73234705-3	chr14	73234593	73234793	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-3198.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	8.48	11.57	10.27	13.67	10.23	14.74	14.95	19.63	14.36	10.54	20.1	13.16
Merged-chr10-14115177-3	chr10	14115061	14115261	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 4 of 12)	Lx9|LINE|L1	148782.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	12.52	3.77	8.56	14.48	6.95	10.66	10.63	10.93	11.6	9.04	25.12	3.45
Merged-chr13-59836236-3	chr13	59836150	59836350	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13103.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	19.38	10.31	17.11	16.89	20.05	16.93	12.62	23.3	8.06	13.56	8.04	7.52
Merged-chr18-62231587-2	chr18	62231485	62231685	+	877.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51485.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	12.92	6.04	7.99	6.03	19.23	29.48	18.93	12.42	9.44	12.55	17.08	7.83
Merged-chr7-29491221-1	chr7	29491121	29491321	+	877.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	14239.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.85	3.52	4.56	1.61	9.41	4.08	3.32	3.81	19.47	15.06	18.59	8.14
Merged-chr5-139378112-3	chr5	139378006	139378206	+	877.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	409.0	NR_033147	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	11.71	13.08	9.13	4.02	13.5	13.48	9.97	14.13	20.06	17.57	16.08	15.66
Merged-chr8-126581008-3	chr8	126580912	126581112	+	877.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	12424.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.5	11.32	12.55	17.29	12.68	12.23	9.97	11.64	17.51	11.05	18.59	13.47
Merged-chr13-110538345-3	chr13	110538241	110538441	+	877.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143297.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.23	8.05	14.83	20.91	27.41	19.44	24.25	35.19	18.69	9.54	23.62	14.72
Merged-chr7-121269546-3	chr7	121269435	121269635	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122761.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	11.31	4.28	11.41	8.45	89.59	107.87	65.11	85.35	109.56	90.88	107.53	59.21
Merged-chr3-95282477-3	chr3	95282371	95282571	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199475)	promoter-TSS (NM_199475)	-395.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	9.69	7.55	13.69	14.48	16.36	29.79	17.61	15.22	28.72	25.11	32.66	13.47
Merged-chr5-93152680-3	chr5	93152556	93152756	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	53839.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	11.31	13.08	4.56	20.51	4.5	11.29	6.98	8.55	16.52	17.07	21.1	5.33
Merged-chr3-100618709-1	chr3	100618609	100618809	+	877.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010763, intron 7 of 12)	intron (NM_010763, intron 7 of 12)	66764.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	5.65	4.53	7.42	4.02	11.45	8.15	15.28	16.4	4.33	2.51	3.01	3.13
Merged-chr6-137404448-1	chr6	137404348	137404548	+	877.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-6273.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.44	6.04	5.13	4.02	12.27	33.55	12.62	8.58	5.11	6.53	11.56	3.45
Merged-chr9-37236072-3	chr9	37235985	37236185	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	19653.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	28.67	26.66	31.38	30.16	69.55	63.34	66.43	97.46	9.83	17.07	6.53	5.33
Merged-chr14-16256376-2	chr14	16256279	16256479	+	877.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021504, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	-6571.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	7.27	5.28	10.84	7.64	13.5	10.35	13.29	13.23	14.16	15.06	11.05	10.34
Merged-chr10-58445993-1	chr10	58445893	58446093	+	877.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-859.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	8.88	9.31	2.28	6.03	11.05	9.41	9.97	4.26	12.0	13.56	14.57	11.9
Merged-chr6-17065585-2	chr6	17065488	17065688	+	877.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	439.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	8.48	4.28	3.99	4.02	16.77	4.39	9.3	10.85	9.44	5.52	7.03	8.77
Merged-chr18-70478024-3	chr18	70477920	70478120	+	877.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	5354.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	12.11	8.3	3.42	12.87	14.32	23.2	9.3	15.06	22.23	9.04	15.07	11.28
Merged-chr10-96334821-3	chr10	96334741	96334941	+	877.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108634.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	13.33	7.04	16.54	8.85	26.18	29.48	30.56	31.4	14.36	15.06	17.59	13.47
Merged-chr3-79854635-2	chr3	79854541	79854741	+	877.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11979.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	8.08	2.52	12.55	3.22	7.77	15.37	5.31	12.95	15.54	10.04	16.58	6.89
Merged-chr10-43751092-3	chr10	43751019	43751219	+	877.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	4961.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	12.52	16.35	22.25	14.88	11.86	15.37	6.31	21.39	21.05	14.06	10.05	13.16
Merged-chr13-81264759-1	chr13	81264659	81264859	+	877.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	L1PB4|LINE|L1	300685.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.65	2.26	4.56	3.22	11.86	2.51	14.28	11.92	3.74	8.03	8.04	5.95
Merged-chr18-61086383-3	chr18	61086289	61086489	+	877.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19183.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	10.09	12.32	19.4	8.04	15.55	31.98	11.63	7.65	29.11	21.59	22.61	12.84
Merged-chr7-140112392-5	chr7	140112312	140112512	+	877.585693	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053119, intron 3 of 7)	intron (NM_053119, intron 3 of 7)	4011.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	5.25	3.77	5.7	6.84	7.77	6.27	5.31	11.94	10.82	7.53	8.04	14.72
Merged-chr11-103359856-3	chr11	103359759	103359959	+	877.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183288, exon 3 of 3)	3' UTR (NM_183288, exon 3 of 3)	3833.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	11.71	12.32	13.12	14.08	12.27	6.9	7.31	16.21	14.16	10.04	15.07	9.4
Merged-chr16-91561749-3	chr16	91561672	91561872	+	877.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008338, exon 6 of 7)	exon (NM_008338, exon 6 of 7)	14678.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.27	9.06	3.99	5.63	20.46	11.29	10.3	16.57	41.7	50.71	38.19	41.35
Merged-chr18-50036837-3	chr18	50036730	50036930	+	877.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5846.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	17.77	22.89	14.26	16.09	15.96	17.87	16.28	14.69	15.54	4.52	11.05	3.13
Merged-chr11-53737754-3	chr11	53737663	53737863	+	877.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16969.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	10.5	9.31	3.99	9.65	12.68	13.8	9.3	11.13	19.87	20.08	12.56	12.22
Merged-chr2-34782449-5	chr2	34782274	34782474	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	10284.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	28.67	24.9	5.13	8.45	14.32	40.45	0.66	0.11	13.96	25.11	3.52	2.51
Merged-chr12-3807832-2	chr12	3807735	3807935	+	877.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	675.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	12.92	7.55	3.99	3.22	8.59	11.29	17.94	17.44	12.78	16.57	15.07	12.22
Merged-chr12-35267364-1	chr12	35267264	35267464	+	877.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72467.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.85	3.77	3.42	5.23	9.82	9.41	8.3	5.21	2.36	1.0	3.01	5.01
Merged-chrX-23710199-3	chrX	23710110	23710310	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	17159.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	17.77	9.31	14.83	16.09	25.36	28.85	13.95	25.23	14.55	19.08	17.59	6.58
Merged-chr8-79389475-2	chr8	79389392	79389592	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	9976.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	8.08	4.78	10.84	18.1	9.41	3.76	4.65	6.03	6.49	11.05	4.52	1.57
Merged-chr6-122560539-3	chr6	122560437	122560637	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009645, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	6728.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	8.88	9.56	13.12	7.24	11.05	12.86	9.97	11.72	17.11	13.56	14.07	6.89
Merged-chr9-119402581-3	chr9	119402463	119402663	+	877.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001313757, exon 1 of 11)	exon (NM_001313757, exon 1 of 11)	385.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	11.31	8.55	10.27	10.86	14.73	10.66	9.97	6.11	12.78	23.6	15.07	10.65
Merged-chr4-150012722-3	chr4	150012621	150012821	+	877.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3698.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	9.69	11.32	6.85	8.45	15.55	22.26	11.96	14.33	19.08	43.68	15.07	13.47
Merged-chr11-88950386-3	chr11	88950303	88950503	+	877.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5039.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	13.73	14.59	15.97	11.26	12.27	19.13	9.3	10.54	17.11	10.54	7.54	11.9
Merged-chr2-167716990-3	chr2	167716902	167717102	+	877.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25825.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	12.11	8.55	10.27	4.83	16.77	37.94	14.62	17.19	16.52	34.65	17.59	15.98
Merged-chr12-24592538-3	chr12	24592443	24592643	+	877.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	11824.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	8.88	10.82	0.0	2.82	4.09	20.38	6.64	7.82	12.39	10.04	12.06	6.58
Merged-chr1-170901745-3	chr1	170901650	170901850	+	877.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11191.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	10.9	11.32	5.13	5.63	16.77	9.72	3.32	7.51	20.85	16.57	18.59	9.4
Merged-chr15-58324236-3	chr15	58324114	58324314	+	877.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177755)	promoter-TSS (NM_177755)	-45.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	30.28	27.67	10.27	9.65	51.55	79.02	26.91	31.85	45.63	20.08	28.14	10.65
Merged-chr15-77537676-1	chr15	77537576	77537776	+	877.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-4361.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	5.65	3.27	9.13	2.41	3.27	5.96	3.32	2.64	27.14	27.11	13.57	9.71
Merged-chr2-11516220-4	chr2	11516197	11516397	+	877.394409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	-14207.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.83	3.77	2.85	4.83	6.14	3.76	4.98	5.36	2.95	3.01	3.52	2.19
Merged-chr5-7994230-3	chr5	7994117	7994317	+	877.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	33745.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	8.88	14.59	11.41	12.87	8.18	14.11	8.64	16.29	17.51	15.06	18.09	13.47
Merged-chr7-24364982-3	chr7	24364862	24365062	+	877.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5301.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	6.06	4.02	16.54	4.42	8.59	8.15	5.31	7.82	15.54	12.55	9.55	14.41
Merged-chrX-96244764-3	chrX	96244658	96244858	+	877.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1941.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	12.92	9.56	19.97	24.53	18.41	20.07	34.21	48.98	12.59	11.55	19.09	13.16
Merged-chr13-102906542-3	chr13	102906449	102906649	+	877.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146294.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	19.79	10.31	17.11	8.85	22.91	10.66	6.98	15.67	22.62	24.1	12.06	13.47
Merged-chr9-57764463-3	chr9	57764386	57764586	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007713, intron 1 of 12)	CpG	1374.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	7.27	9.31	9.13	4.02	9.0	12.54	7.64	7.57	20.26	20.59	13.06	10.02
Merged-chr13-92337083-3	chr13	92337006	92337206	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	(CACCT)n|Simple_repeat|Simple_repeat	-17677.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	14.13	12.32	5.7	9.65	39.68	42.65	38.53	34.93	23.6	24.6	15.58	22.24
Merged-chr2-103965691-3	chr2	103965551	103965751	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-3906.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	9.29	8.3	13.69	9.25	14.32	12.54	9.97	20.24	11.8	6.53	12.56	9.71
Merged-chr11-97942577-3	chr11	97942484	97942684	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163608, intron 7 of 13)	intron (NM_001163608, intron 7 of 13)	43862.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	20.59	24.65	9.13	10.46	15.14	34.18	11.29	12.31	42.68	37.16	38.69	23.81
Merged-chr17-48337030-3	chr17	48336946	48337146	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9355.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	8.48	5.53	5.13	16.09	8.59	20.07	5.31	15.95	26.36	23.1	34.17	18.17
Merged-chr8-41319211-1	chr8	41319111	41319311	+	877.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 29 of 37)	intron (NM_023662, intron 29 of 37)	55486.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.0	2.77	0.0	0.4	2.45	1.25	0.0	0.53	12.59	6.53	16.08	7.52
Merged-chr9-40764207-3	chr9	40764105	40764305	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-37068.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	14.54	8.05	19.4	12.47	13.5	12.86	14.28	16.93	9.44	8.54	24.12	22.87
Merged-chr8-122913379-1	chr8	122913279	122913479	+	877.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65005.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.25	4.02	3.42	5.63	12.68	12.54	3.32	8.27	4.33	9.54	5.53	5.95
Merged-chr5-24046792-3	chr5	24046680	24046880	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16090.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	12.92	9.06	20.54	10.05	16.36	16.93	11.29	14.52	19.28	18.58	12.56	14.72
Merged-chr1-184235768-3	chr1	184235670	184235870	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201389.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	13.73	8.8	5.13	10.05	15.96	15.68	7.97	4.32	18.88	12.05	15.58	6.58
Merged-chr6-8744548-1	chr6	8744448	8744648	+	877.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252266, intron 3 of 11)	intron (NM_001252266, intron 3 of 11)	13910.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	2.42	0.0	0.0	0.8	8.59	5.64	4.98	13.01	3.74	5.52	8.54	5.33
Merged-chr5-99297334-3	chr5	99297234	99297434	+	877.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030692)	TTS (NR_030692)	-44407.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	16.15	13.33	13.69	15.28	11.45	14.11	10.63	21.14	12.39	12.05	9.55	7.52
Merged-chr12-34683616-3	chr12	34683511	34683711	+	877.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-154722.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.9	11.07	6.85	10.05	5.32	10.35	4.65	9.39	17.31	28.62	22.11	15.98
Merged-chr1-182937812-3	chr1	182937717	182937917	+	877.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16971.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	23.42	12.83	15.97	8.04	12.68	23.2	9.63	11.05	9.44	15.06	11.05	2.82
Merged-chr3-39269018-2	chr3	39268906	39269106	+	877.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	382066.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.83	10.82	15.97	8.85	0.0	1.25	1.99	0.28	69.04	66.28	52.26	34.77
Merged-chr6-31114518-2	chr6	31114477	31114677	+	877.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51484.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	14.13	10.31	20.54	16.09	15.96	18.19	7.64	7.01	18.69	28.62	31.66	11.9
Merged-chr11-106160189-5	chr11	106160130	106160330	+	877.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356459)	promoter-TSS (NM_001356459)	-54.0	NM_172397	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	7.67	5.03	3.42	8.04	11.45	12.86	5.65	5.69	12.78	16.07	13.57	3.45
Merged-chr4-134929794-3	chr4	134929686	134929886	+	877.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1194.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	23.02	15.59	14.26	11.26	6.55	15.37	9.63	6.95	10.82	10.04	11.56	10.34
Merged-chr8-121580649-3	chr8	121580538	121580738	+	877.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	14.13	11.32	9.13	9.65	25.36	15.68	7.97	21.45	23.01	20.08	15.07	15.35
Merged-chr16-57363148-3	chr16	57363037	57363237	+	877.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	RMER17B2|LTR|ERVK	9860.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.27	9.31	11.41	10.05	15.14	23.2	10.96	15.53	19.28	20.08	26.63	18.48
Merged-chr11-94118853-1	chr11	94118753	94118953	+	877.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025428, intron 26 of 26)	intron (NM_001025428, intron 26 of 26)	74648.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	1.21	0.0	0.57	0.8	16.36	8.15	7.64	16.65	7.08	7.53	4.52	6.89
Merged-chr7-75118266-3	chr7	75118172	75118372	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360573, intron 13 of 13)	intron (NM_001360573, intron 13 of 13)	88061.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	26.25	17.61	19.97	30.97	25.36	43.9	19.27	46.21	10.62	11.55	9.04	3.13
Merged-chr4-88309945-3	chr4	88309844	88310044	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 21 of 43)	intron (NM_001081184, intron 21 of 43)	128982.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.65	8.55	13.69	12.87	11.86	6.59	12.95	12.87	10.62	4.52	7.03	6.89
Merged-chr4-53439125-3	chr4	53439019	53439219	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1294.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	17.36	10.06	10.84	10.86	20.46	27.28	17.61	13.96	23.41	27.11	12.06	8.46
Merged-chr8-95149571-2	chr8	95149480	95149680	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	12.92	10.06	17.68	11.26	9.41	10.35	2.66	12.98	1.77	7.53	8.54	5.95
Merged-chr17-50390338-3	chr17	50390245	50390445	+	877.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-96725.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	9.69	11.57	16.54	13.67	18.0	13.8	5.31	17.07	29.9	30.13	25.12	7.21
Merged-chr10-88200735-3	chr10	88200641	88200841	+	877.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	-356.0	NM_026070	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	6.46	9.81	12.55	8.85	15.96	13.8	14.62	14.66	17.11	20.59	9.55	8.46
Merged-chr19-11234447-3	chr19	11234350	11234550	+	877.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	31701.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	8.88	5.53	15.4	16.89	22.91	13.17	14.62	16.93	14.95	8.03	17.59	12.22
Merged-chr17-26691467-3	chr17	26691362	26691562	+	877.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	15066.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	15.75	23.14	18.83	11.26	15.14	24.77	15.28	9.45	26.16	18.08	19.6	9.08
Merged-chr13-95524660-1	chr13	95524560	95524760	+	877.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007974, intron 1 of 1)	CpG	580.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.0	0.25	3.42	2.41	0.0	0.94	3.32	1.29	6.29	2.51	2.01	0.63
Merged-chr6-129727450-2	chr6	129727351	129727551	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-10319.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	13.73	10.56	6.85	12.47	14.73	17.56	15.61	9.79	6.49	16.07	9.04	2.82
Merged-chr1-14820018-1	chr1	14819918	14820118	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-64052.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	5.65	5.03	3.99	3.22	11.05	3.76	5.31	16.46	2.36	10.04	9.04	13.47
Merged-chr17-70095863-1	chr17	70095763	70095963	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	126790.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.81	4.02	5.7	1.61	1.64	4.08	7.64	8.83	0.98	0.0	4.52	2.19
Merged-chr9-13300400-1	chr9	13300300	13300500	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53444.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	2.83	5.53	8.56	3.22	2.05	2.2	3.32	5.75	7.67	5.02	4.02	4.07
Merged-chr17-35270634-1	chr17	35270534	35270734	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	7511.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	8.48	12.07	3.42	3.22	3.27	13.48	1.33	4.68	2.56	7.53	1.0	2.82
Merged-chr15-96485629-1	chr15	96485529	96485729	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24786.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	4.04	2.52	2.85	7.64	3.68	6.9	2.99	6.76	5.51	0.5	6.53	2.82
Merged-chr4-109439310-1	chr4	109439210	109439410	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145948, intron 13 of 17)	ORR1D2|LTR|ERVL-MaLR	23663.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	2.02	3.52	1.14	2.01	3.27	6.9	4.65	7.29	2.75	3.51	8.04	0.63
Merged-chr17-56613916-1	chr17	56613816	56614016	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_028782)	TTS (NM_028782)	521.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	8.88	13.33	18.25	11.66	7.77	1.57	8.3	4.99	8.85	8.54	12.56	11.59
Merged-chr18-66459772-1	chr18	66459672	66459872	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021451, intron 1 of 2)	intron (NM_021451, intron 1 of 2)	1168.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.65	4.78	5.7	1.61	4.5	9.41	3.99	9.08	5.51	1.51	5.53	10.34
Merged-chr11-17528053-1	chr11	17527953	17528153	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	270365.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	1.62	4.53	0.0	1.61	10.23	5.02	4.98	11.1	4.52	1.0	1.51	4.07
Merged-chr2-33426138-2	chr2	33426041	33426241	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	5183.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.85	5.03	5.7	7.24	6.95	12.23	12.29	12.5	12.0	4.52	6.53	12.22
Merged-chr14-75060743-3	chr14	75060637	75060837	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	44710.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	8.48	16.85	8.56	11.26	13.91	15.37	6.64	10.07	18.49	12.55	17.08	6.58
Merged-chr15-42962891-1	chr15	42962791	42962991	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	207927.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.81	6.04	3.42	6.03	4.09	4.7	10.3	8.38	2.16	6.53	4.02	8.77
Merged-chrX-75874012-1	chrX	75873912	75874112	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346519, intron 1 of 16)	intron (NM_001346519, intron 1 of 16)	562.0	NM_145629	102866.0	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.0	4.78	1.14	2.01	0.82	7.21	2.66	5.86	1.18	4.02	0.0	1.88
Merged-chr19-29047399-1	chr19	29047299	29047499	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028360)	promoter-TSS (NR_028360)	-84.0	NR_028360	67329.0	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	7.27	3.27	3.42	5.23	3.68	10.98	3.65	7.43	3.93	3.01	5.02	4.07
Merged-chr3-108123475-1	chr3	108123375	108123575	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010306, intron 3 of 8)	intron (NM_010306, intron 3 of 8)	22677.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	2.42	3.77	2.85	10.46	5.73	14.42	0.66	7.96	2.56	6.03	5.02	8.77
Merged-chr14-79494413-3	chr14	79494323	79494523	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-13155.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	8.88	14.84	2.28	11.66	22.09	36.37	14.62	12.81	28.91	24.6	30.15	16.29
Merged-chr6-117936096-2	chr6	117936008	117936208	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033648, intron 2 of 8)	intron (NM_033648, intron 2 of 8)	1227.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	6.46	5.03	7.99	2.41	10.23	13.17	9.97	14.36	2.75	3.51	13.06	8.77
Merged-chr14-14606173-3	chr14	14606062	14606262	+	876.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96863.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	24.63	11.32	26.24	21.72	18.82	9.72	9.63	28.29	10.82	13.05	9.55	10.02
Merged-chr16-20694690-3	chr16	20694587	20694787	+	876.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133778)	promoter-TSS (NM_133778)	-370.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	14.54	17.86	9.7	15.28	20.46	26.34	16.94	7.96	14.75	14.06	27.13	8.77
Merged-chr15-98953307-3	chr15	98953240	98953440	+	876.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011653, intron 1 of 3)	CpG	161.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	12.52	5.28	9.13	17.7	1.64	16.31	4.98	8.61	6.69	8.03	8.04	8.77
Merged-chr15-57706069-6	chr15	57705948	57706148	+	876.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11381.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	2.02	9.31	9.7	8.04	10.23	9.41	7.31	4.18	16.72	15.06	15.07	8.77
Merged-chr19-41989950-3	chr19	41989855	41990055	+	876.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	ID_B1|SINE|B4	8192.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	16.56	6.04	23.96	9.65	16.36	13.17	8.64	19.63	14.75	20.59	31.15	10.65
Merged-chr12-111436664-5	chr12	111436538	111436738	+	876.9366460000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6023.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.46	7.8	15.4	1.61	4.91	13.17	3.65	4.21	8.85	8.03	17.59	5.33
Merged-chr2-163777078-2	chr2	163776966	163777166	+	876.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-26827.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	10.5	4.53	22.82	6.84	7.77	11.6	19.93	21.56	5.51	3.01	9.04	8.14
Merged-chr11-45624033-2	chr11	45623941	45624141	+	876.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-184042.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	13.33	9.31	19.97	21.32	19.23	10.98	15.61	16.91	5.11	1.0	8.54	6.27
Merged-chr2-156840706-3	chr2	156840656	156840856	+	876.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291124, intron 1 of 3)	CpG	749.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	25.44	12.58	10.27	8.04	15.96	10.66	12.95	6.95	12.39	6.03	12.06	4.7
Merged-chr11-76631291-3	chr11	76631204	76631404	+	876.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-41166.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	11.31	7.04	18.25	23.33	23.73	23.2	25.91	33.81	20.46	13.56	25.63	19.74
Merged-chr13-81238149-3	chr13	81238046	81238246	+	876.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.65	6.79	11.41	16.49	22.91	21.64	13.62	24.17	18.1	10.54	21.1	22.24
Merged-chrX-8893053-3	chrX	8893010	8893210	+	876.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045448, exon 1 of 1)	non-coding (NR_045448, exon 1 of 1)	757.0	NR_045448	102941.0	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	F-box and leucine-rich repeat protein 17 pseudogene	pseudo	7.67	13.58	13.12	5.63	11.86	11.92	22.26	8.55	10.42	4.02	18.09	10.34
Merged-chr9-95639045-2	chr9	95638931	95639131	+	876.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1403.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	2.02	6.04	6.85	6.03	10.23	7.21	15.28	19.43	14.36	6.03	10.55	15.66
Merged-chr19-17244370-2	chr19	17244276	17244476	+	876.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	95129.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.73	10.56	14.26	20.91	7.77	5.64	8.64	12.98	0.2	0.0	1.0	0.94
Merged-chr1-119502710-3	chr1	119502602	119502802	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	RSINE1|SINE|B4	2080.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	15.75	7.8	15.4	11.26	22.91	22.58	12.29	21.53	33.04	14.56	22.11	13.47
Merged-chr4-152009828-3	chr4	152009733	152009933	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033352, exon 1 of 4)	exon (NM_001033352, exon 1 of 4)	942.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	3.63	5.53	6.28	8.04	8.18	8.15	13.95	9.0	10.82	11.55	10.55	8.46
Merged-chr17-35738008-3	chr17	35737900	35738100	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33401.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	14.54	8.05	10.84	12.87	9.82	17.25	7.31	12.03	22.82	14.06	34.67	8.14
Merged-chr13-52505880-3	chr13	52505785	52505985	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001024474, exon 2 of 2)	3' UTR (NM_001024474, exon 2 of 2)	24951.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	23.02	23.39	31.95	45.85	32.73	23.52	36.87	29.89	6.88	7.03	14.07	8.14
Merged-chr15-79751998-3	chr15	79751882	79752082	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	9284.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	12.11	11.32	19.97	10.46	19.23	16.93	16.28	15.45	13.96	13.56	13.57	10.02
Merged-chr3-9341085-2	chr3	9340983	9341183	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61995.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	5.65	8.55	7.42	14.88	13.5	13.48	12.62	9.59	8.85	6.03	11.56	5.01
Merged-chr7-31105362-3	chr7	31105252	31105452	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	5645.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	5.25	9.31	4.56	3.62	8.59	7.53	14.95	6.03	31.86	24.6	33.16	27.88
Merged-chr4-135193032-3	chr4	135192939	135193139	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72394.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	15.75	11.32	27.95	21.32	19.23	20.7	22.26	26.3	9.44	14.56	10.55	13.16
Merged-chr2-169873615-2	chr2	169873521	169873721	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89566.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.63	6.29	17.11	15.69	8.59	10.35	4.32	10.63	7.08	4.52	10.55	7.83
Merged-chr6-52221782-3	chr6	52221644	52221844	+	876.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3171.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	13.73	12.58	11.41	9.65	13.91	18.19	9.63	17.55	19.47	16.07	13.06	8.77
Merged-chr1-162646462-1	chr1	162646362	162646562	+	876.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177581)	TTS (NM_001177581)	7312.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	4.85	3.02	2.28	1.21	2.05	3.45	1.99	5.24	19.47	9.04	27.13	10.34
Merged-chr3-9199098-1	chr3	9198998	9199198	+	876.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51469.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	6.46	6.04	3.99	5.63	11.86	10.66	4.32	16.71	5.9	2.01	4.52	5.01
Merged-chr18-12154304-3	chr18	12154214	12154414	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 12 of 12)	intron (NM_024182, intron 12 of 12)	-14416.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	18.57	4.28	18.25	13.27	17.59	6.59	4.65	11.24	20.65	11.05	16.58	10.02
Merged-chr17-23804850-3	chr17	23804651	23804851	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175229, intron 1 of 13)	intron (NM_175229, intron 1 of 13)	1564.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	4.85	5.79	4.56	6.84	2.05	4.08	10.63	4.54	10.03	7.03	5.53	9.08
Merged-chr19-4906650-3	chr19	4906539	4906739	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033128)	promoter-TSS (NM_001033128)	-12.0	NM_001033128	52028.0	Mm.23636	NM_001033128	ENSMUSG00000006464	Bbs1	AI451249|D19Ertd609e	Bardet-Biedl syndrome 1 (human)	protein-coding	15.75	8.3	7.99	7.24	5.32	8.15	2.66	7.49	22.82	14.06	9.55	7.83
Merged-chr13-67797764-1	chr13	67797664	67797864	+	876.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045194, intron 2 of 2)	intron (NR_045194, intron 2 of 2)	-16052.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	1.62	1.01	3.42	1.21	1.64	0.0	1.33	1.54	16.33	11.05	20.1	9.71
Merged-chr2-164947688-3	chr2	164947582	164947782	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013599)	promoter-TSS (NM_013599)	-537.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	12.11	16.85	3.99	3.22	16.77	17.56	2.99	3.93	8.06	16.07	13.57	10.65
Merged-chr13-50418871-2	chr13	50418757	50418957	+	876.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154272, intron 1 of 10)	RLTR30B_MM|LTR|ERV1	993.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	2.02	5.53	10.27	9.65	11.05	9.41	3.99	8.69	9.05	4.02	8.54	5.01
Merged-chr4-9099305-2	chr4	9099200	9099400	+	876.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169993.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	10.5	4.53	1.71	0.0	9.82	12.54	4.98	7.15	20.85	15.57	7.03	3.13
Merged-chr6-38805844-2	chr6	38805744	38805944	+	876.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	31467.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	21.4	12.58	19.4	16.09	12.27	7.53	16.61	27.5	5.7	6.53	8.54	11.59
Merged-chr3-31060669-2	chr3	31060647	31060847	+	876.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21781.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	6.86	6.54	0.0	0.4	4.09	11.92	6.64	4.99	13.18	9.04	6.03	2.51
Merged-chr3-65653195-2	chr3	65653099	65653299	+	876.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6089.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	5.25	2.77	7.42	7.64	11.86	15.05	9.97	18.25	11.8	17.07	16.58	14.41
Merged-chr4-123664761-3	chr4	123664618	123664818	+	876.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1163.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	13.33	15.59	8.56	15.28	12.68	13.17	12.29	8.02	13.57	7.53	2.51	9.71
Merged-chr2-122132305-3	chr2	122132207	122132407	+	876.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	B4A|SINE|B4	-13921.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	13.33	16.1	20.54	16.09	15.96	5.33	14.28	14.64	14.16	9.04	12.56	15.35
Merged-chr7-96539346-4	chr7	96539214	96539414	+	876.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	L3|LINE|CR1	-197350.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.06	9.06	7.42	12.87	3.68	10.03	9.3	8.47	10.03	10.54	12.56	8.77
Merged-chr18-53862872-3	chr18	53862778	53862978	+	876.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 1 of 12)	CpG	765.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	16.15	9.81	4.56	7.24	8.18	10.98	11.63	10.46	12.39	13.56	24.12	12.22
Merged-chr10-24902295-1	chr10	24902195	24902395	+	876.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027347, exon 20 of 29)	exon (NM_027347, exon 20 of 29)	-8369.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	2.02	1.51	1.14	0.8	2.05	0.0	0.0	1.37	4.52	18.08	5.02	10.02
Merged-chr2-128412503-3	chr2	128412411	128412611	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	16840.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	20.59	12.83	2.28	6.44	11.86	30.1	4.32	8.44	12.98	22.09	12.56	7.21
Merged-chr13-21914704-3	chr13	21914614	21914814	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17665.0	NR_035500	100316716.0		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	21.8	19.62	29.09	30.97	13.5	6.9	15.94	29.94	16.92	11.05	13.57	11.59
Merged-chr1-189792751-2	chr1	189792679	189792879	+	876.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 2 of 18)	intron (NM_008976, intron 2 of 18)	64511.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	4.04	4.53	6.28	2.82	8.18	9.41	2.66	12.67	12.98	17.57	15.58	14.1
Merged-chr2-117105529-3	chr2	117105448	117105648	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15523.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	5.65	9.81	6.28	10.46	9.41	7.53	13.62	17.89	10.23	15.06	11.56	12.84
Merged-chr11-82073176-3	chr11	82073066	82073266	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15334.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	15.75	7.8	7.99	2.82	16.36	17.25	4.32	4.09	12.59	23.6	13.57	6.89
Merged-chr12-117832366-3	chr12	117832272	117832472	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11489.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	18.98	13.83	26.81	21.32	14.32	14.11	10.96	16.65	9.64	6.53	17.08	7.21
Merged-chr5-134455580-3	chr5	134455493	134455693	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	669.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	11.71	7.55	17.11	4.02	12.68	14.74	9.3	14.05	11.41	8.03	9.55	10.02
Merged-chr10-16621032-3	chr10	16620922	16621122	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	474760.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.85	11.32	9.13	11.26	13.5	12.86	13.29	24.73	24.39	18.58	35.68	14.41
Merged-chr19-9989661-3	chr19	9989547	9989747	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011913, exon 8 of 12)	exon (NM_011913, exon 8 of 12)	7001.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	16.56	11.82	5.13	10.05	22.09	15.68	7.97	9.06	23.8	20.59	12.56	11.28
Merged-chr5-33203791-3	chr5	33203690	33203890	+	876.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14448.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	12.92	5.03	5.13	10.05	14.73	16.62	5.65	12.48	27.34	12.55	17.08	12.22
Merged-chr2-122743107-3	chr2	122742998	122743198	+	876.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	4593.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	18.17	36.22	17.68	14.08	13.5	39.82	10.96	8.64	29.5	28.12	11.56	12.53
Merged-chr1-177188942-1	chr1	177188842	177189042	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	59825.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.85	5.28	11.41	6.84	4.09	9.41	5.98	10.18	7.08	6.03	23.62	2.82
Merged-chr10-94345691-1	chr10	94345591	94345791	+	876.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	33742.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	2.85	0.0	0.0	2.51	0.66	1.21	16.13	18.08	12.06	9.71
Merged-chr8-128519585-1	chr8	128519485	128519685	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160344.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	4.85	6.54	3.42	7.24	8.18	9.72	2.99	7.82	5.7	4.52	11.56	3.76
Merged-chr8-127439954-1	chr8	127439854	127440054	+	876.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033620, intron 20 of 24)	ID2|SINE|ID	140302.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.4	0.0	1.14	2.41	2.05	0.31	1.33	1.51	6.49	10.54	6.03	6.89
Merged-chr7-122670989-3	chr7	122670882	122671082	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019430)	promoter-TSS (NM_019430)	-762.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	12.92	13.33	21.68	16.89	8.18	13.48	6.64	11.75	21.83	12.55	27.64	11.28
Merged-chr2-33870515-2	chr2	33870405	33870605	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	17441.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.65	1.26	2.28	6.03	15.14	5.64	10.3	20.89	6.1	4.02	18.09	11.28
Merged-chr1-39527646-3	chr1	39527554	39527754	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8047.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	12.11	6.54	10.84	5.63	13.5	12.54	13.62	17.27	20.06	13.56	19.09	15.66
Merged-chr13-104032700-3	chr13	104032614	104032814	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029447, intron 12 of 12)	intron (NM_029447, intron 12 of 12)	76900.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	20.59	7.29	17.11	15.69	20.05	15.37	21.92	29.19	11.6	13.05	9.55	10.65
Merged-chr4-139130309-3	chr4	139130207	139130407	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163006, intron 1 of 3)	CpG	730.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	12.11	8.55	14.26	6.44	10.23	8.47	9.3	7.46	22.23	14.56	16.58	13.78
Merged-chr16-91376857-2	chr16	91376757	91376957	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	4074.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.27	10.06	16.54	12.07	17.59	10.35	16.94	13.63	3.34	4.52	14.57	7.83
Merged-chr2-68874655-3	chr2	68874544	68874744	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	13203.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	7.67	7.04	9.7	13.27	21.68	21.95	33.88	52.68	25.57	23.6	28.14	17.54
Merged-chr8-39955663-1	chr8	39955563	39955763	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	-312985.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.46	6.29	11.98	5.23	9.0	4.08	17.61	25.57	1.38	1.0	1.51	0.63
Merged-chr17-64821018-2	chr17	64820936	64821136	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15035.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	10.84	3.22	21.68	18.5	16.94	19.65	3.93	13.56	19.09	11.59
Merged-chr3-144704156-3	chr3	144704051	144704251	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	16184.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	12.11	15.85	13.12	9.65	21.27	16.31	8.97	19.18	27.54	2.51	28.14	8.77
Merged-chr6-30205829-3	chr6	30205721	30205921	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	29198.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	13.33	10.31	15.4	14.88	11.45	7.84	12.29	9.5	15.54	16.07	17.59	12.84
Merged-chr5-64317429-3	chr5	64317341	64317541	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	87084.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	11.31	9.31	14.26	18.1	11.05	20.7	12.29	19.18	12.98	8.54	15.07	7.83
Merged-chr9-85497085-3	chr9	85496979	85497179	+	876.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169929.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.46	9.06	18.83	10.46	32.32	22.58	19.6	25.71	13.77	12.55	41.2	11.9
Merged-chr14-55497483-3	chr14	55497372	55497572	+	876.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155104, intron 17 of 38)	intron (NR_155104, intron 17 of 38)	6402.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	17.36	8.05	7.42	8.45	19.23	13.48	3.65	13.79	17.11	17.07	14.57	14.1
Merged-chr11-4527272-3	chr11	4527173	4527373	+	876.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	67542.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	17.36	13.33	18.25	11.66	16.36	12.54	14.28	21.76	14.16	10.54	16.58	10.02
Merged-chr17-26203548-3	chr17	26203438	26203638	+	876.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081069, intron 3 of 16)	CpG-6118	597.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	11.31	12.58	5.7	7.24	8.59	11.6	4.32	11.5	9.44	11.55	10.05	10.65
Merged-chr18-36025729-2	chr18	36025623	36025823	+	876.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167891, intron 5 of 9)	L2|LINE|L2	60893.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	11.71	9.06	19.4	10.46	4.5	8.78	1.99	11.41	7.08	9.54	14.07	5.01
Merged-chr2-142861177-3	chr2	142861081	142861281	+	876.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	40283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	10.5	13.08	15.4	20.11	23.73	5.96	20.26	28.77	19.87	9.04	24.62	11.28
Merged-chr5-24908330-3	chr5	24908223	24908423	+	876.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001170556, exon 1 of 12)	exon (NM_001170556, exon 1 of 12)	186.0	NM_001170556	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	12.11	7.29	9.7	12.07	13.09	9.41	20.59	7.29	15.14	17.07	19.6	16.92
Merged-chr11-114830244-3	chr11	114830129	114830329	+	876.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21303.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	12.11	5.53	6.85	10.05	12.27	8.47	7.64	10.93	18.49	18.58	10.55	6.58
Merged-chr9-78427546-3	chr9	78427457	78427657	+	876.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15680.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	10.09	4.02	7.99	5.63	24.55	12.23	21.59	29.83	33.04	27.11	30.15	20.99
Merged-chr4-59438439-6	chr4	59438306	59438506	+	876.352783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163288, exon 1 of 17)	5' UTR (NM_001163288, exon 1 of 17)	227.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	9.29	12.58	10.27	5.23	13.09	15.99	6.31	6.2	8.46	9.54	10.05	7.21
Merged-chr8-122898656-2	chr8	122898561	122898761	+	876.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037865, exon 8 of 14)	non-coding (NR_037865, exon 8 of 14)	50287.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	7.27	5.79	9.13	3.62	9.41	19.13	14.95	13.21	9.24	17.57	13.06	8.46
Merged-chr11-120237392-3	chr11	120237297	120237497	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	4450.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	33.92	18.61	34.8	11.26	4.5	12.86	2.99	6.67	22.62	15.06	20.1	20.68
Merged-chr5-140608941-3	chr5	140608842	140609042	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1601.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	13.73	9.56	7.99	0.4	6.14	14.42	19.93	16.77	12.0	12.55	6.03	8.46
Merged-chr19-6475492-3	chr19	6475413	6475613	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	56775.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.85	10.82	6.28	10.86	9.82	11.92	6.98	6.08	5.51	10.04	2.51	7.52
Merged-chr13-95955660-3	chr13	95955553	95955753	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-63731.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.46	2.26	10.27	9.25	24.96	16.31	27.57	27.59	11.41	11.05	18.09	11.9
Merged-chr18-74402541-1	chr18	74402441	74402641	+	876.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	-40078.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	6.86	5.53	3.99	3.62	12.68	6.59	5.98	9.95	1.97	9.04	2.01	5.95
Merged-chr6-54163013-3	chr6	54162913	54163113	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-101845.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	14.54	10.82	10.27	12.07	17.59	15.05	12.95	28.04	16.52	10.54	17.08	15.04
Merged-chr17-74454507-1	chr17	74454407	74454607	+	876.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4601.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.04	3.77	7.42	0.4	13.91	8.47	9.3	8.5	9.64	10.04	13.57	10.02
Merged-chr1-127859256-1	chr1	127859156	127859356	+	876.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9517.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.0	0.25	0.0	4.42	0.82	0.63	1.33	1.93	8.26	9.54	19.09	7.21
Merged-chr18-38013924-3	chr18	38013832	38014032	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14963.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	8.08	12.83	9.13	7.64	13.5	15.05	9.3	11.52	14.55	12.55	25.12	9.4
Merged-chr10-6983050-3	chr10	6982944	6983144	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039652, intron 4 of 5)	intron (NM_001039652, intron 4 of 5)	-2579.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	10.9	12.32	26.81	28.96	20.86	11.6	12.95	26.8	14.36	3.01	14.07	8.77
Merged-chr17-88112022-3	chr17	88111935	88112135	+	876.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13477.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	12.92	8.3	3.42	5.23	10.64	21.01	9.3	2.38	30.29	40.67	21.1	9.08
Merged-chr2-93566339-3	chr2	93566172	93566372	+	876.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-76162.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	3.23	9.56	4.56	12.07	3.68	3.45	4.32	7.54	12.19	7.53	12.06	8.77
Merged-chr9-65200792-3	chr9	65200687	65200887	+	876.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-13903.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	11.31	8.05	17.11	3.62	20.46	22.26	15.28	12.34	16.13	25.11	19.6	15.04
Merged-chr8-11113422-2	chr8	11113336	11113536	+	876.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105006.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	29.88	8.05	6.28	14.08	20.86	18.81	10.3	26.24	11.01	1.51	6.03	6.27
Merged-chr17-64941772-3	chr17	64941674	64941874	+	876.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-105703.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	8.88	14.84	9.7	14.08	38.86	33.24	24.58	37.46	22.03	13.05	29.65	11.28
Merged-chr19-12595679-3	chr19	12595596	12595796	+	876.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	870.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	12.92	18.61	34.23	20.11	20.46	12.86	10.96	25.99	15.14	6.53	11.56	8.46
Merged-chr2-84460122-3	chr2	84460012	84460212	+	876.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355271, intron 2 of 8)	intron (NM_001355271, intron 2 of 8)	14062.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	10.9	13.08	3.42	9.65	9.0	18.19	10.3	16.15	20.46	12.05	29.65	15.04
Merged-chr3-142618854-3	chr3	142618748	142618948	+	876.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010259, exon 11 of 11)	3' UTR (NM_010259, exon 11 of 11)	-1815.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	23.42	21.38	26.24	9.25	17.18	20.07	11.29	6.34	25.18	33.64	16.58	12.53
Merged-chr2-38536065-3	chr2	38535983	38536183	+	876.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24207.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	14.54	14.59	9.7	3.62	15.55	18.5	6.31	14.22	13.57	9.54	22.61	14.72
Merged-chr10-45018176-3	chr10	45018015	45018215	+	876.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49099.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	9.69	10.31	5.7	11.26	28.23	17.56	8.64	12.9	11.41	9.54	6.53	5.64
Merged-chr12-100499698-1	chr12	100499598	100499798	+	876.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 2 of 19)	intron (NM_001033213, intron 2 of 19)	21124.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.83	2.77	2.85	0.8	11.86	10.35	8.64	12.98	1.57	1.0	0.0	0.0
Merged-chr8-116944618-3	chr8	116944532	116944732	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	1239.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	6.06	10.31	15.97	16.89	16.36	10.98	8.3	16.65	10.23	11.55	16.08	13.16
Merged-chr19-32071153-1	chr19	32071053	32071253	+	876.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018830, intron 2 of 23)	intron (NM_018830, intron 2 of 23)	31987.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.81	0.75	0.0	0.0	0.41	0.0	0.33	1.09	15.34	19.08	15.07	10.34
Merged-chr19-37504432-3	chr19	37504287	37504487	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39133.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	13.73	6.79	4.56	5.63	6.55	6.27	4.32	8.02	9.05	5.52	14.07	3.45
Merged-chr12-100277755-3	chr12	100277673	100277873	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	1164.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	31.9	41.5	40.5	24.94	4.91	28.22	7.64	14.36	12.0	7.53	10.55	6.27
Merged-chr6-124759493-3	chr6	124759411	124759611	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302642)	TTS (NM_001302642)	-3024.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	8.48	12.32	10.27	14.48	16.36	10.98	8.3	7.99	7.67	5.52	18.59	10.34
Merged-chr7-84211680-1	chr7	84211580	84211780	+	876.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59787.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	1.62	2.52	2.28	1.61	3.68	3.76	3.32	0.2	24.78	15.06	23.62	9.08
Merged-chr2-181410859-2	chr2	181410764	181410964	+	876.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13524.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	6.46	4.53	2.28	3.22	13.5	16.93	20.59	14.64	18.1	10.04	15.58	15.98
Merged-chr19-5572482-3	chr19	5572376	5572576	+	876.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4452.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	16.96	14.09	12.55	7.64	15.96	22.89	11.29	17.58	16.13	15.57	11.05	14.1
Merged-chr5-123137809-3	chr5	123137690	123137890	+	876.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4403.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	9.69	15.09	15.97	9.25	15.55	26.34	13.62	24.53	10.82	16.57	27.13	13.47
Merged-chr11-43656690-3	chr11	43656594	43656794	+	876.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25304.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	15.75	14.09	25.67	13.27	9.0	21.32	14.95	17.13	10.23	14.06	14.57	8.46
Merged-chr14-7964644-3	chr14	7964557	7964757	+	876.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007870)	TTS (NM_007870)	29525.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	6.86	14.84	5.7	11.26	12.68	18.19	5.98	11.5	12.78	20.59	28.64	11.9
Merged-chr17-35254923-3	chr17	35254825	35255025	+	876.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	3636.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	8.48	8.55	3.99	6.44	18.0	22.89	10.3	11.92	19.67	13.56	25.12	10.34
Merged-chr10-44434808-3	chr10	44434712	44434912	+	876.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23936.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.86	9.06	23.39	18.5	8.59	4.7	7.97	19.23	21.83	13.05	27.13	17.23
Merged-chr5-29772838-2	chr5	29772738	29772938	+	876.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-36902.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	12.92	12.83	15.97	13.67	23.73	11.92	5.98	13.35	12.0	4.02	22.11	5.01
Merged-chr18-64594124-2	chr18	64594088	64594288	+	876.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	66812.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	4.85	5.28	9.7	4.83	9.82	11.92	6.31	8.78	0.2	0.0	0.0	0.31
Merged-chr18-82815348-3	chr18	82815222	82815422	+	876.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40575.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	7.27	8.55	13.69	8.04	15.55	16.31	8.64	12.62	28.52	12.55	30.65	14.72
Merged-chr16-70408019-3	chr16	70407938	70408138	+	876.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	94089.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	11.31	14.09	19.4	33.38	21.68	16.31	9.97	35.72	9.24	9.04	6.03	6.27
Merged-chr12-76594365-4	chr12	76594142	76594342	+	876.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46317.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	1.62	6.54	9.13	4.02	5.32	6.9	4.32	6.39	2.95	10.54	2.51	5.01
Merged-chr10-118870432-3	chr10	118870343	118870543	+	876.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1540.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	18.17	10.82	14.83	22.52	28.64	26.03	7.97	13.04	9.64	18.08	13.57	10.02
Merged-chr2-102750107-1	chr2	102750007	102750207	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-3347.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	5.25	5.79	8.56	2.82	3.68	8.78	0.66	7.35	7.28	11.55	8.04	4.7
Merged-chr9-90256107-1	chr9	90256007	90256207	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	14662.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.42	2.01	1.71	2.41	6.55	3.45	7.31	6.9	3.93	3.51	9.55	4.07
Merged-chr15-5241920-1	chr15	5241820	5242020	+	876.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2267.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.86	4.78	7.99	5.23	4.5	2.51	7.31	4.54	9.64	13.05	16.58	10.02
Merged-chr3-14912171-1	chr3	14912071	14912271	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25883.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	6.06	2.26	2.28	10.05	9.0	5.02	17.94	18.31	9.24	1.51	7.03	8.46
Merged-chr12-80259429-1	chr12	80259329	80259529	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	CpG	942.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.04	5.28	7.42	4.42	6.14	3.45	5.98	6.2	3.34	7.03	3.52	3.13
Merged-chr5-99213586-1	chr5	99213486	99213686	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	39341.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	10.5	10.56	0.0	2.41	3.68	15.37	1.66	2.89	2.95	6.53	2.01	2.19
Merged-chr3-137992525-3	chr3	137992422	137992622	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10973.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.67	13.83	5.7	16.09	15.55	15.68	12.95	9.36	10.03	8.54	12.56	3.76
Merged-chr10-121470396-1	chr10	121470296	121470496	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	5854.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.42	1.51	5.7	2.41	3.27	1.25	9.97	7.01	4.13	0.0	3.52	5.33
Merged-chr12-70991979-3	chr12	70991872	70992072	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045055, exon 4 of 4)	non-coding (NR_045055, exon 4 of 4)	17349.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	8.08	13.33	12.55	12.07	10.23	6.59	9.3	9.79	19.47	13.05	17.08	18.8
Merged-chr9-66917590-3	chr9	66917480	66917680	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	2125.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	13.33	16.1	7.99	8.04	11.05	26.03	15.28	5.05	22.23	16.07	11.05	1.25
Merged-chr5-5319963-3	chr5	5319855	5320055	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-53887.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	10.5	12.58	9.13	13.27	11.05	9.41	6.64	14.07	12.98	10.54	28.14	14.1
Merged-chr7-109139520-1	chr7	109139420	109139620	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302205, intron 3 of 3)	intron (NM_001302205, intron 3 of 3)	30992.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	10.09	7.04	5.13	2.41	1.64	8.78	6.31	8.8	8.06	4.02	3.52	5.01
Merged-chr11-79878326-3	chr11	79878232	79878432	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84055.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	8.48	6.04	15.97	12.07	32.73	26.03	14.95	37.51	31.67	21.59	23.11	16.92
Merged-chr8-82941610-1	chr8	82941510	82941710	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	78254.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	1.62	0.25	1.14	4.83	4.91	8.15	5.65	9.93	1.57	0.0	3.52	0.0
Merged-chr16-64756490-3	chr16	64756405	64756605	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	14434.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	6.46	9.56	15.97	8.04	18.0	14.11	13.95	20.75	18.69	22.59	25.63	15.66
Merged-chrX-50805856-1	chrX	50805756	50805956	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35515.0	NM_133729	70415.0	Mm.46254	NM_133729	ENSMUSG00000031112	Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding	4.04	2.01	3.99	6.44	12.68	9.41	9.3	10.29	7.47	4.02	7.54	6.89
Merged-chr4-132261605-3	chr4	132261503	132261703	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020273)	promoter-TSS (NM_020273)	-54.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	16.15	15.59	10.27	3.22	25.77	21.64	6.64	11.24	16.72	16.57	26.63	11.9
Merged-chr11-50199942-1	chr11	50199842	50200042	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_011018)	TTS (NM_011018)	10878.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	10.09	8.55	0.0	0.8	2.05	8.47	1.33	1.35	2.36	5.52	0.0	0.94
Merged-chr7-80849920-2	chr7	80849810	80850010	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12198.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	14.13	3.27	9.13	4.83	11.86	9.72	2.33	11.52	20.85	18.58	13.06	11.59
Merged-chr7-105808540-3	chr7	105808438	105808638	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025301, exon 3 of 3)	3' UTR (NM_025301, exon 3 of 3)	2549.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	15.34	11.07	5.7	5.63	13.09	31.98	18.27	4.18	6.88	12.05	12.06	2.51
Merged-chr3-30572441-1	chr3	30572341	30572541	+	876.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	27429.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.82	1.57	0.33	3.25	11.01	8.54	28.14	14.72
Merged-chr10-60278622-2	chr10	60278509	60278709	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	981.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.46	5.28	5.13	7.24	7.36	7.21	14.28	15.98	13.57	6.53	23.11	13.47
Merged-chr10-80661377-1	chr10	80661277	80661477	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-4306.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	13.33	22.89	1.71	0.8	6.14	13.48	1.33	2.21	11.41	5.52	7.54	4.7
Merged-chr12-83953904-2	chr12	83953807	83954007	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023633)	TTS (NM_023633)	3299.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	6.86	6.29	10.27	13.67	4.91	5.96	4.98	7.71	16.92	3.51	16.08	5.01
Merged-chr5-140795427-2	chr5	140795315	140795515	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35016.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	8.88	9.56	17.68	9.25	20.86	21.01	9.3	18.17	6.1	5.02	5.53	3.45
Merged-chr9-59578169-5	chr9	59578126	59578326	+	875.953308	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-111.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	14.94	6.29	7.42	3.22	13.09	13.8	9.3	6.25	12.59	12.55	12.56	7.52
Merged-chr3-9878999-3	chr3	9878885	9879085	+	875.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45306.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	10.09	8.55	12.55	10.86	11.45	15.68	7.31	13.96	25.37	17.57	34.17	10.34
Merged-chr2-126600691-2	chr2	126600602	126600802	+	875.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	17976.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	5.25	6.54	7.99	12.87	20.86	11.6	22.26	17.55	17.7	9.04	19.6	11.9
Merged-chr5-140749290-2	chr5	140749193	140749393	+	875.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173405, exon 7 of 8)	exon (NM_173405, exon 7 of 8)	25166.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	11.31	12.07	5.13	14.88	14.32	12.86	7.31	12.14	7.08	15.06	11.05	8.14
Merged-chr11-46875846-3	chr11	46875753	46875953	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65054.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.27	8.55	21.68	2.82	4.91	19.44	12.95	6.93	24.98	14.56	31.66	7.83
Merged-chr10-87839624-3	chr10	87839522	87839722	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18643.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	13.73	5.79	14.26	8.85	15.14	24.15	16.28	22.68	18.88	20.59	13.06	5.64
Merged-chr2-148686439-3	chr2	148686338	148686538	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	5318.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	8.48	8.8	15.97	13.27	10.23	28.54	14.28	20.3	17.31	33.14	24.62	20.36
Merged-chr11-98772991-3	chr11	98772867	98773067	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	2410.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.67	6.54	4.56	1.61	8.18	10.66	1.0	5.16	15.93	14.56	3.52	2.19
Merged-chr12-116461388-3	chr12	116461312	116461512	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-24308.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	15.34	10.56	16.54	20.11	16.36	9.09	21.26	30.22	7.87	12.05	22.61	7.83
Merged-chr17-23774280-3	chr17	23774179	23774379	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2677.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	10.9	11.07	7.99	5.23	13.91	10.35	4.98	10.85	32.85	27.62	42.71	31.64
Merged-chr16-94648133-3	chr16	94648022	94648222	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	36703.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	18.57	23.39	11.41	10.46	22.5	29.79	9.63	10.23	27.93	27.11	29.65	10.65
Merged-chr10-44449863-2	chr10	44449758	44449958	+	875.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	8890.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.44	1.51	7.99	7.24	19.23	9.09	1.66	8.69	11.6	6.03	7.54	9.71
Merged-chr19-37957393-3	chr19	37957283	37957483	+	875.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 21 of 53)	L1MC4|LINE|L1	86194.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	9.29	12.58	31.38	20.11	20.46	22.58	26.57	27.5	13.96	8.54	22.61	10.02
Merged-chr18-15202386-3	chr18	15202285	15202485	+	875.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50939.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	9.69	10.82	17.11	18.9	20.46	7.21	19.6	25.65	19.28	19.58	30.65	12.53
Merged-chr3-14836952-2	chr3	14836856	14837056	+	875.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-26582.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	6.06	6.29	17.11	12.07	13.91	3.45	13.95	19.32	0.0	0.0	0.0	0.0
Merged-chr2-101715837-2	chr2	101715743	101715943	+	875.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001110849, exon 10 of 10)	3' UTR (NM_001110849, exon 10 of 10)	37423.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	1.01	0.0	0.0	10.23	8.15	4.32	9.17	11.41	23.1	20.1	13.47
Merged-chr1-161496650-2	chr1	161496558	161496758	+	875.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	2001.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	18.17	11.82	5.7	15.69	4.09	2.82	2.33	3.48	9.44	13.05	16.08	5.64
Merged-chr6-120469923-3	chr6	120469766	120469966	+	875.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	6669.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.46	3.02	18.25	10.05	12.27	16.93	21.92	26.66	13.96	11.05	9.04	4.7
Merged-chr8-11100501-1	chr8	11100401	11100601	+	875.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92071.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.04	4.53	9.13	9.25	9.82	16.31	11.96	15.93	5.51	4.02	7.54	2.51
Merged-chr14-54387927-1	chr14	54387827	54388027	+	875.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21545.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.62	4.53	7.99	9.25	6.14	11.29	13.62	15.0	0.39	0.0	4.02	0.94
Merged-chr4-62283616-3	chr4	62283496	62283696	+	875.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2833.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	7.67	10.31	11.98	8.45	6.55	5.33	8.97	6.11	11.21	16.57	9.04	10.34
Merged-chr18-10794039-3	chr18	10793935	10794135	+	875.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144860, intron 13 of 20)	intron (NM_144860, intron 13 of 20)	-8483.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	10.5	7.55	21.68	9.65	16.77	13.48	13.29	24.34	22.82	13.56	23.11	12.84
Merged-chr13-9638190-3	chr13	9638085	9638285	+	875.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 31 of 36)	(CA)n|Simple_repeat|Simple_repeat	125625.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	14.13	10.06	10.84	23.73	15.55	9.41	12.62	18.0	16.72	24.1	15.58	13.78
Merged-chr5-124446038-4	chr5	124445922	124446122	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	523.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	11.31	8.3	2.85	6.44	4.09	6.59	5.65	5.16	4.13	7.53	1.51	6.27
Merged-chr14-78790598-1	chr14	78790498	78790698	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57869.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	8.08	12.58	5.7	7.64	6.55	15.37	9.3	9.28	1.77	2.51	3.01	0.63
Merged-chr6-140491152-1	chr6	140491052	140491252	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	67053.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	4.04	3.77	7.42	8.04	11.86	5.64	6.98	12.9	6.69	4.52	9.04	6.27
Merged-chr2-27366388-2	chr2	27366285	27366485	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	61223.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	8.88	9.06	16.54	18.5	7.36	3.14	17.94	22.46	6.1	5.02	14.57	4.07
Merged-chr3-127293053-3	chr3	127292958	127293158	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	116000.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	8.08	7.29	27.38	10.46	15.96	19.13	16.61	23.5	27.73	26.11	34.67	22.87
Merged-chr1-138965225-1	chr1	138965125	138965325	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	1516.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	3.23	2.77	0.0	1.21	9.0	5.64	9.63	10.04	6.29	6.03	4.52	6.89
Merged-chr6-128648709-3	chr6	128648545	128648745	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13740.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	6.86	7.04	10.27	15.28	15.55	18.5	21.26	19.37	11.8	8.54	14.07	11.59
Merged-chr4-59459503-2	chr4	59459411	59459611	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-20878.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.27	2.77	2.28	3.22	10.64	8.47	7.64	7.37	16.33	24.1	34.67	22.24
Merged-chr13-108268013-3	chr13	108267890	108268090	+	875.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-48347.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	9.29	6.29	13.12	12.47	15.96	15.99	10.3	15.56	12.39	25.61	19.6	11.9
Merged-chr15-81810294-3	chr15	81810211	81810411	+	875.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1103.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	10.5	9.56	15.4	12.07	14.32	14.42	21.59	16.99	20.85	13.56	17.08	12.53
Merged-chr16-10965173-3	chr16	10965072	10965272	+	875.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27949.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	12.92	18.61	13.69	14.48	10.64	12.86	9.97	13.37	18.29	18.58	17.59	6.27
Merged-chr4-95716343-3	chr4	95716226	95716426	+	875.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	136905.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	15.34	4.78	23.96	11.26	4.09	15.05	17.61	16.68	18.69	15.06	11.56	9.08
Merged-chr2-73511204-1	chr2	73511104	73511304	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	RSINE1|SINE|B4	18283.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.85	2.52	7.99	6.84	9.41	3.14	12.62	8.55	5.31	1.0	5.02	3.13
Merged-chr1-24677901-1	chr1	24677801	24678001	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-643.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.65	3.02	4.56	0.0	3.68	6.59	6.98	7.93	4.92	6.03	6.03	6.27
Merged-chr19-21319759-1	chr19	21319659	21319859	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	47481.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	1.21	2.52	1.14	3.22	9.41	6.27	7.97	9.73	4.52	8.03	7.03	4.07
Merged-chr17-35165748-1	chr17	35165648	35165848	+	875.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-871.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	8.08	3.02	7.99	1.61	10.23	12.54	10.63	7.21	20.46	13.56	13.57	9.71
Merged-chr3-145729747-3	chr3	145729655	145729855	+	875.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28937.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	5.25	6.29	2.28	8.85	25.36	14.74	18.27	29.66	21.64	22.59	37.69	18.17
Merged-chr13-56129773-1	chr13	56129673	56129873	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159513, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	5777.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.04	0.5	3.99	2.41	4.91	8.15	4.98	9.14	5.9	4.02	7.54	4.39
Merged-chr2-165388273-2	chr2	165388159	165388359	+	875.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178411)	promoter-TSS (NM_178411)	0.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	13.33	7.04	0.0	4.02	4.5	9.09	14.28	12.73	9.24	9.04	13.06	10.65
Merged-chr7-101450110-3	chr7	101450010	101450210	+	875.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243758)	promoter-TSS (NM_001243758)	-410.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	12.92	10.06	3.42	4.02	10.64	20.7	4.98	11.64	16.72	21.09	10.55	10.02
Merged-chr2-167715212-3	chr2	167715104	167715304	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24027.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	13.73	8.05	22.82	9.25	25.77	14.42	17.27	15.42	13.37	11.05	22.11	20.99
Merged-chr10-53914169-3	chr10	53914027	53914227	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 11 of 12)	intron (NM_008548, intron 11 of 12)	161669.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	12.11	2.52	0.57	11.26	11.86	9.72	10.63	11.58	6.1	8.54	6.03	11.28
Merged-chr14-75016598-3	chr14	75016510	75016710	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	583.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	11.71	6.29	2.28	8.85	13.91	10.35	8.97	7.21	11.21	12.05	20.6	13.47
Merged-chr13-10251973-3	chr13	10251883	10252083	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 1 of 4)	L1MC1|LINE|L1	108820.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	10.5	8.55	11.41	23.73	18.0	11.6	17.94	26.16	21.24	18.58	27.64	13.16
Merged-chr2-52988079-2	chr2	52987979	52988179	+	875.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	130211.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.65	10.56	11.41	6.03	11.86	18.5	9.97	15.62	13.77	10.54	5.53	5.64
Merged-chr10-81464540-2	chr10	81464442	81464642	+	875.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176954, intron 9 of 11)	CpG-1367	8589.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	12.11	10.06	1.71	4.02	11.45	14.11	14.95	6.76	10.42	5.02	7.03	4.07
Merged-chr5-115300369-3	chr5	115300268	115300468	+	875.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131932)	promoter-TSS (NR_131932)	622.0	NM_019682	56455.0	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	16.56	16.85	6.85	5.63	9.82	15.37	6.64	7.91	14.36	14.56	16.58	14.41
Merged-chr8-36265411-3	chr8	36265319	36265519	+	875.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15903.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	10.5	6.54	1.14	9.25	19.23	18.81	17.61	32.16	18.29	16.57	31.15	13.47
Merged-chr15-51696909-3	chr15	51696802	51697002	+	875.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168559.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	12.52	8.55	12.55	6.03	13.5	12.86	5.31	10.79	17.11	19.58	20.6	11.28
Merged-chrX-61659316-3	chrX	61659222	61659422	+	875.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-50294.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	8.48	5.53	14.26	8.04	18.82	9.41	14.95	28.71	24.59	34.65	30.15	18.17
Merged-chr16-97996198-2	chr16	97996106	97996306	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-1109.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	2.02	10.31	0.57	3.22	7.36	8.15	1.0	7.26	11.21	6.53	17.08	6.89
Merged-chr17-5885653-1	chr17	5885553	5885753	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	44273.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	9.69	1.76	3.42	6.03	4.09	6.27	9.3	7.29	3.54	1.51	4.52	3.76
Merged-chr3-96578359-3	chr3	96578267	96578467	+	875.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001293701, exon 7 of 7)	3' UTR (NM_001293701, exon 7 of 7)	-11566.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	17.36	5.79	7.99	2.41	17.18	19.13	3.32	2.66	26.75	13.56	9.55	5.64
Merged-chr15-102243605-3	chr15	102243471	102243671	+	875.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2929.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	12.92	13.08	17.11	11.26	13.91	20.7	7.64	14.02	16.92	19.58	13.06	11.28
Merged-chr13-46975144-1	chr13	46975044	46975244	+	875.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	39706.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	3.23	2.77	0.0	0.0	7.36	3.14	1.33	2.97	20.65	17.57	14.57	12.22
Merged-chr7-71379146-1	chr7	71379046	71379246	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-530549.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0.4	5.03	0.57	2.41	5.32	5.64	7.97	6.25	0.98	1.0	2.51	3.45
Merged-chr7-28671347-3	chr7	28671259	28671459	+	875.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21490.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	11.71	8.3	7.99	16.09	15.14	16.93	10.3	12.62	30.88	24.6	27.64	25.69
Merged-chr4-86679967-1	chr4	86679867	86680067	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9908.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.21	1.01	0.57	5.63	8.18	3.76	6.98	10.57	2.75	1.51	5.02	5.33
Merged-chr8-119832572-1	chr8	119832472	119832672	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8007.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	8.88	5.28	5.7	5.23	5.73	2.82	1.99	6.73	4.13	5.52	3.52	1.57
Merged-chr5-110815648-3	chr5	110815522	110815722	+	875.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5541.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	7.27	11.32	19.4	15.28	14.73	13.8	9.97	15.45	19.28	20.08	13.57	7.21
Merged-chr2-150874748-3	chr2	150874649	150874849	+	875.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	29982.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.48	8.8	13.69	10.86	14.32	17.56	15.61	19.91	13.77	14.56	10.05	6.27
Merged-chr14-74906176-3	chr14	74906080	74906280	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	41697.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	14.54	12.83	27.38	18.5	15.14	20.7	7.64	20.5	9.44	10.54	6.03	11.59
Merged-chr11-116986211-3	chr11	116986122	116986322	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	67359.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	7.27	7.29	10.27	14.88	15.96	18.81	24.58	28.6	14.55	20.59	20.1	11.9
Merged-chr4-118992014-3	chr4	118991922	118992122	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30055.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	16.96	13.58	11.41	8.04	12.68	13.48	1.99	6.11	18.69	15.57	8.04	15.04
Merged-chr10-80922168-3	chr10	80922101	80922301	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3956.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	10.5	9.06	7.99	2.01	10.23	14.42	11.63	10.43	10.82	6.03	15.07	9.4
Merged-chr1-193200708-3	chr1	193200602	193200802	+	875.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	844.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	12.11	9.56	13.12	7.64	13.91	10.98	9.3	14.75	14.75	11.05	19.6	17.54
Merged-chr2-122376467-2	chr2	122376371	122376571	+	875.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7553.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.06	3.27	11.98	8.04	9.82	7.84	3.99	7.32	9.05	17.57	18.59	18.48
Merged-chr5-117115616-2	chr5	117115513	117115713	+	875.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122666, intron 1 of 12)	CpG	380.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	10.9	8.05	6.85	8.45	11.45	4.39	11.96	8.61	5.9	6.03	5.53	6.58
Merged-chr10-84060754-1	chr10	84060654	84060854	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	39943.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	2.02	2.77	3.99	9.65	7.77	3.45	5.31	8.89	3.15	2.51	4.52	1.88
Merged-chr10-68075569-1	chr10	68075469	68075669	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	95999.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	2.83	2.77	1.14	5.63	2.86	4.39	5.31	7.57	3.93	2.01	2.51	1.57
Merged-chr2-112433553-3	chr2	112433433	112433633	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21492.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	10.09	3.27	18.83	14.08	19.23	16.93	16.94	27.36	22.23	21.09	17.59	12.22
Merged-chr17-32738643-3	chr17	32738543	32738743	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	48904.0	NM_001346705	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	11.31	9.56	9.13	10.46	13.5	17.87	14.95	14.38	21.83	28.12	16.08	20.68
Merged-chr1-156014917-1	chr1	156014817	156015017	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	19900.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.46	2.52	11.98	8.85	11.45	5.33	10.63	8.92	4.33	3.01	1.51	3.13
Merged-chr2-122637839-3	chr2	122637743	122637943	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004174)	promoter-TSS (NM_001004174)	-44.0	NM_001004174	433470.0	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	12.11	8.55	9.7	8.45	23.32	28.54	10.96	14.8	19.28	37.16	37.18	15.98
Merged-chr4-6453066-2	chr4	6452939	6453139	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1232.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	7.27	7.55	2.28	5.63	7.36	13.17	9.63	7.96	17.9	16.07	4.52	9.71
Merged-chr10-51414738-3	chr10	51414650	51414850	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65862.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	3.23	8.55	10.27	17.7	9.41	9.41	9.97	10.88	32.06	24.1	38.69	15.98
Merged-chr18-37908250-3	chr18	37908137	37908337	+	875.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	27239.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	21.8	13.58	4.56	13.27	16.77	20.07	4.65	14.55	22.03	12.55	25.63	17.54
Merged-chr5-34634679-4	chr5	34634614	34634814	+	875.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026660, intron 8 of 12)	intron (NM_026660, intron 8 of 12)	2498.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.81	10.56	1.71	5.23	1.64	3.14	3.32	4.21	5.7	1.0	7.03	3.76
Merged-chr16-50449290-3	chr16	50449194	50449394	+	875.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-16828.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	12.11	9.06	5.7	19.31	7.77	13.48	10.96	15.76	19.28	13.56	18.09	10.34
Merged-chr18-35927666-4	chr18	35927562	35927762	+	875.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37168.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	4.04	9.31	2.28	3.62	0.41	3.14	1.99	3.06	2.56	8.54	5.53	5.64
Merged-chr4-59044952-3	chr4	59044862	59045062	+	875.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	9806.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	12.11	8.05	23.96	19.71	14.73	11.6	16.61	21.36	18.1	11.05	9.04	11.59
Merged-chr17-67431024-3	chr17	67430931	67431131	+	875.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76540.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	15.75	7.8	23.39	11.66	18.82	24.46	14.95	21.59	17.51	16.07	17.59	6.27
Merged-chr11-101582252-3	chr11	101582164	101582364	+	875.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	22.0	NM_144830	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	10.9	9.06	4.56	7.64	18.0	11.6	7.97	10.46	18.1	22.09	8.04	14.41
Merged-chr19-5793183-5	chr19	5793018	5793218	+	875.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	2863.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	14.94	7.55	4.56	7.24	20.86	13.17	1.66	3.95	8.46	11.05	2.51	5.95
Merged-chr12-102663623-2	chr12	102663502	102663702	+	875.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	21418.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	6.46	6.79	19.97	10.86	16.36	10.66	9.3	19.6	6.29	6.03	9.04	6.27
Merged-chr2-136680013-1	chr2	136679913	136680113	+	875.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33437.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	1.62	2.01	0.0	4.83	19.23	8.47	8.97	16.21	0.79	4.02	3.01	2.51
Merged-chr2-50642417-3	chr2	50642310	50642510	+	875.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-267274.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.65	8.05	10.27	14.48	15.96	22.26	19.6	26.78	18.1	16.57	21.1	18.48
Merged-chr7-34957999-3	chr7	34957895	34958095	+	875.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	45588.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	14.94	5.79	21.68	15.69	9.0	16.93	14.95	27.34	8.06	4.02	11.05	9.71
Merged-chr18-24709494-3	chr18	24709396	24709596	+	875.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175276, exon 1 of 27)	5' UTR (NM_175276, exon 1 of 27)	873.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	13.73	9.81	11.41	8.45	9.82	8.78	9.63	16.49	14.16	19.58	16.58	2.82
Merged-chr18-46963255-3	chr18	46963154	46963354	+	875.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4378.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	14.54	10.56	7.42	6.84	19.23	13.17	6.98	9.34	11.8	16.57	16.58	5.01
Merged-chr13-51417956-3	chr13	51417867	51418067	+	875.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	9349.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	8.08	8.8	7.42	20.91	18.82	7.21	13.29	20.55	11.21	5.02	19.6	10.65
Merged-chr10-79983878-3	chr10	79983773	79983973	+	875.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	387.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	10.9	8.05	6.28	7.24	4.09	4.7	3.65	10.15	14.55	13.05	9.04	8.14
Merged-chr15-100743475-3	chr15	100743387	100743587	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10750.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	14.13	13.33	10.27	9.65	13.5	13.8	8.97	12.76	24.98	19.58	28.14	16.29
Merged-chr18-32394543-3	chr18	32394439	32394639	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-16255.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	10.5	7.04	12.55	8.45	12.68	16.31	10.3	10.85	10.62	7.03	16.08	3.76
Merged-chr1-107564811-3	chr1	107564728	107564928	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-25178.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	11.31	8.8	17.68	9.65	11.05	15.99	9.3	19.65	16.33	8.03	25.63	7.21
Merged-chr4-128983487-3	chr4	128983390	128983590	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9734.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	10.5	16.85	19.97	10.46	20.46	8.47	3.99	13.74	9.64	16.07	10.55	11.28
Merged-chr2-51305344-6	chr2	51305217	51305417	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63486.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	5.25	2.77	7.42	5.63	9.41	11.29	4.32	12.11	12.78	10.54	19.6	9.4
Merged-chr5-137741547-3	chr5	137741435	137741635	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347505)	promoter-TSS (NM_001347505)	-367.0	NM_001347505	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	23.82	14.84	10.84	8.04	26.59	18.19	13.29	10.18	14.75	10.54	16.08	7.83
Merged-chr2-146402950-2	chr2	146402844	146403044	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	109060.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	10.9	10.56	16.54	16.89	4.5	10.66	14.28	19.18	0.59	1.0	1.0	1.88
Merged-chrX-94169525-3	chrX	94169430	94169630	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	43121.0	NM_012010	26905.0	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	17.77	6.54	8.56	14.88	24.96	23.52	9.63	19.46	12.78	21.59	16.58	14.72
Merged-chr2-152729724-2	chr2	152729609	152729809	+	875.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6542.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	16.96	11.07	12.55	9.65	2.05	3.45	2.33	1.15	7.87	4.02	7.03	7.21
Merged-chr1-128749976-2	chr1	128749851	128750051	+	875.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-157652.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.81	3.52	10.84	12.47	3.27	1.88	22.26	26.41	0.79	0.0	1.0	0.31
Merged-chr17-74341674-2	chr17	74341550	74341750	+	875.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357738, intron 1 of 15)	Lx9|LINE|L1	2663.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	4.85	1.51	4.56	2.82	2.86	3.76	7.64	9.76	18.88	17.07	13.57	10.02
Merged-chr16-44811761-3	chr16	44811651	44811851	+	875.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8977.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	8.88	8.3	19.97	13.27	16.36	12.23	11.96	21.45	14.36	11.55	17.59	14.41
Merged-chr18-5945187-3	chr18	5945086	5945286	+	875.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190912.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	9.29	10.31	18.83	8.45	65.87	61.77	52.15	69.81	6.49	12.55	15.58	7.21
Merged-chr6-125046880-3	chr6	125046761	125046961	+	875.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	2992.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	12.52	5.03	15.97	8.85	9.41	9.72	4.32	9.31	16.92	9.54	16.08	13.78
Merged-chr9-38718303-3	chr9	38718226	38718426	+	875.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172767)	promoter-TSS (NM_172767)	58.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	10.9	11.57	9.7	14.48	8.59	7.53	11.96	16.57	15.54	22.09	27.64	14.41
Merged-chr3-122295718-3	chr3	122295638	122295838	+	875.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2035.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	9.69	10.56	10.84	14.48	13.09	17.87	9.97	21.17	19.08	12.05	20.6	12.22
Merged-chr11-120150529-3	chr11	120150427	120150627	+	875.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	824.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	17.77	15.85	9.7	10.05	9.41	24.77	9.3	11.21	28.72	19.08	20.6	12.84
Merged-chr1-152903784-2	chr1	152903697	152903897	+	875.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG-603	-1151.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	16.56	25.91	6.85	11.66	13.91	16.31	8.3	10.65	24.19	15.06	12.06	11.59
Merged-chr8-115618372-5	chr8	115618234	115618434	+	875.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	88560.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.06	3.02	6.28	2.82	11.86	5.02	7.97	6.9	8.06	8.03	9.04	6.27
Merged-chr15-100598978-3	chr15	100598898	100599098	+	875.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	986.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	22.21	11.82	3.99	12.87	13.09	12.54	7.31	5.86	15.14	8.54	17.59	12.22
Merged-chr19-5801169-3	chr19	5801064	5801264	+	875.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	1508.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	16.15	14.84	20.54	6.44	7.77	9.72	3.65	6.28	16.33	16.07	9.04	16.29
Merged-chr13-37742448-3	chr13	37742344	37742544	+	875.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83594.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	10.9	9.06	22.25	10.46	13.5	13.17	10.96	16.51	21.64	8.03	4.02	10.65
Merged-chr12-16588822-3	chr12	16588729	16588929	+	875.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130412, intron 1 of 20)	intron (NM_001130412, intron 1 of 20)	941.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	37.96	20.12	12.55	20.11	17.59	25.4	11.63	23.58	6.1	10.54	8.54	8.77
Merged-chr8-35557029-3	chr8	35556929	35557129	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30769.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	9.69	5.03	5.13	11.66	29.05	25.4	35.21	25.99	20.46	33.14	28.14	26.94
Merged-chr2-6872331-1	chr2	6872231	6872431	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-296.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.81	7.04	10.84	6.44	5.32	10.03	8.3	9.7	2.56	5.52	6.03	3.13
Merged-chr7-98711213-1	chr7	98711113	98711313	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	7966.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	5.25	5.53	1.71	0.8	10.64	5.33	6.98	9.67	4.72	0.0	1.51	4.07
Merged-chr10-7850234-1	chr10	7850134	7850334	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	13853.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	1.62	1.26	2.85	0.0	2.45	1.88	1.33	2.78	1.38	2.51	1.51	3.13
Merged-chr3-8789956-1	chr3	8789856	8790056	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	-122918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.83	3.02	3.99	8.85	8.18	4.7	3.32	6.84	6.29	0.0	9.55	4.07
Merged-chr17-31118739-1	chr17	31118639	31118839	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009593)	TTS (NM_009593)	10872.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.81	1.26	4.56	3.62	5.32	5.96	3.65	2.07	1.18	2.01	3.01	6.27
Merged-chrX-93602417-1	chrX	93602317	93602517	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008892, intron 10 of 36)	Lx5c|LINE|L1	29738.0	NM_008892	18968.0	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	2.83	2.26	1.14	7.64	3.68	3.14	6.98	8.02	2.16	1.0	1.0	4.39
Merged-chr15-63996698-1	chr15	63996598	63996798	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	1368.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.62	1.01	5.13	2.41	5.73	2.51	8.97	9.5	6.69	5.52	10.55	7.52
Merged-chr3-41523682-1	chr3	41523582	41523782	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130791, intron 1 of 5)	RSINE1|SINE|B4	4792.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	3.23	7.04	4.56	3.22	14.73	7.84	13.62	18.84	5.31	1.0	7.54	2.19
Merged-chr6-53713316-2	chr6	53713221	53713421	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	107504.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	4.44	9.81	14.83	8.04	6.95	11.92	7.97	8.24	4.72	3.51	5.02	2.51
Merged-chr18-23753671-3	chr18	23753581	23753781	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162941)	promoter-TSS (NM_001162941)	-44.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	21.4	11.57	7.42	8.45	9.82	7.53	10.3	13.85	21.05	15.06	20.6	7.83
Merged-chr8-66494996-1	chr8	66494896	66495096	+	875.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8466.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.65	6.29	2.28	3.22	10.64	15.99	8.64	8.07	27.54	26.61	18.09	6.27
Merged-chr7-127386836-1	chr7	127386736	127386936	+	875.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030226, exon 1 of 3)	exon (NM_030226, exon 1 of 3)	330.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	1.62	3.77	3.42	0.0	4.91	15.05	6.64	7.68	12.98	12.05	13.57	9.4
Merged-chr16-3744901-2	chr16	3744806	3745006	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	807.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	8.08	4.28	9.7	5.23	7.77	14.11	5.98	9.79	26.95	10.54	7.54	5.95
Merged-chr15-101373662-1	chr15	101373562	101373762	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3537.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	1.62	5.53	3.42	9.25	23.32	6.9	7.31	9.84	3.34	7.03	5.02	2.51
Merged-chr1-16295033-1	chr1	16294933	16295133	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189151.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.44	3.52	3.99	4.02	7.36	12.23	6.64	9.7	5.7	3.51	3.52	10.65
Merged-chr13-101712202-1	chr13	101712102	101712302	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-19572.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.42	4.02	7.99	3.62	9.0	3.14	7.64	11.92	12.19	6.03	3.01	3.13
Merged-chr13-25562918-1	chr13	25562818	25563018	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-292922.0	NM_009513	22360.0	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	2.42	4.78	4.56	9.65	2.05	1.88	8.97	6.79	3.54	5.02	9.55	5.01
Merged-chr5-38082009-2	chr5	38081905	38082105	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	42775.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	6.86	6.79	21.11	12.47	6.55	9.41	5.65	7.88	11.01	4.02	6.53	3.13
Merged-chr10-67098000-1	chr10	67097900	67098100	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	6.06	5.28	5.13	2.82	8.59	6.59	5.98	8.33	7.47	5.02	15.07	3.76
Merged-chr13-60712704-1	chr13	60712604	60712804	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	MER58A|DNA|hAT-Charlie	73660.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.62	1.51	1.14	0.0	9.0	12.86	9.3	11.36	2.75	1.51	3.01	0.63
Merged-chr11-117654105-2	chr11	117654014	117654214	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198022)	promoter-TSS (NM_198022)	-175.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	10.9	7.8	6.28	10.46	18.82	21.32	7.31	6.93	10.82	18.08	11.56	10.65
Merged-chr10-40314771-1	chr10	40314671	40314871	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12583.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	6.06	0.25	0.0	9.25	5.73	3.45	5.31	9.22	5.51	9.54	5.53	7.52
Merged-chr5-134458891-3	chr5	134458816	134459016	+	874.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2200.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	12.92	6.54	15.4	4.02	10.23	16.31	14.62	20.22	15.93	14.06	14.07	8.77
Merged-chr10-81404906-3	chr10	81404729	81404929	+	874.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008688, exon 8 of 10)	exon (NM_008688, exon 8 of 10)	-4746.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	8.08	3.77	0.0	7.24	7.36	6.9	11.63	14.86	4.92	7.03	15.07	6.89
Merged-chr13-69534115-3	chr13	69534003	69534203	+	874.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-239.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	18.98	15.09	10.84	21.32	18.82	22.58	25.91	23.33	20.46	10.54	20.6	10.34
Merged-chr19-6067159-3	chr19	6067062	6067262	+	874.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081041)	TTS (NM_001081041)	688.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	13.73	10.31	10.27	6.84	18.82	18.5	5.31	5.52	14.36	7.03	21.61	16.6
Merged-chr2-164389749-3	chr2	164389640	164389840	+	874.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252563, intron 10 of 10)	CpG	-13454.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	13.33	20.12	10.84	8.04	14.32	16.31	10.63	12.2	17.9	14.06	14.57	6.89
Merged-chr13-28417701-3	chr13	28417605	28417805	+	874.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	275221.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	11.71	8.55	15.97	9.25	18.0	16.62	38.86	61.51	10.62	5.02	18.09	12.53
Merged-chr1-120099659-2	chr1	120099555	120099755	+	874.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21264.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	4.04	4.28	4.56	2.41	9.0	12.23	9.63	6.08	70.81	60.25	87.43	48.87
Merged-chr9-119949016-3	chr9	119948905	119949105	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028735, intron 9 of 28)	intron (NM_028735, intron 9 of 28)	11399.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	11.71	14.34	7.99	2.41	13.91	18.19	5.98	7.68	14.36	17.07	10.55	5.95
Merged-chr2-118390260-3	chr2	118390167	118390367	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177806, intron 1 of 37)	MER46C|DNA|TcMar-Tigger	1155.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	14.54	8.05	16.54	12.87	8.18	10.66	7.31	13.29	15.93	16.07	24.12	10.34
Merged-chr11-5012463-3	chr11	5012374	5012574	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	25650.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	14.94	11.32	15.4	23.73	16.36	12.86	16.94	33.76	9.83	9.54	11.56	12.22
Merged-chr17-43327958-3	chr17	43327875	43328075	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32456.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	5.25	6.54	7.42	11.66	36.82	30.1	47.17	32.36	49.96	30.63	56.78	34.15
Merged-chr2-12085679-3	chr2	12085586	12085786	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-215560.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	15.34	7.04	9.13	17.7	9.82	6.27	9.97	19.91	16.52	10.04	20.1	11.9
Merged-chr2-157082020-4	chr2	157081885	157082085	+	874.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2720.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.25	5.03	13.69	10.46	11.05	13.17	12.62	19.88	13.18	13.56	14.07	7.52
Merged-chr16-11070161-4	chr16	11070090	11070290	+	874.7937619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3892.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	12.92	13.83	3.99	10.46	6.55	10.66	7.97	12.03	7.47	7.03	15.58	8.46
Merged-chr8-68951963-3	chr8	68951875	68952075	+	874.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	71420.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	13.73	1.76	15.4	19.71	7.36	4.39	12.95	19.6	15.93	12.55	36.68	19.42
Merged-chr10-81498273-3	chr10	81498166	81498366	+	874.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010102, exon 1 of 1)	3' UTR (NM_010102, exon 1 of 1)	1871.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	12.11	9.56	4.56	3.62	5.73	10.66	8.3	7.6	12.78	11.55	4.52	14.1
Merged-chr4-12490627-1	chr4	12490527	12490727	+	874.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-318612.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	2.42	5.03	2.28	3.22	9.0	12.23	7.97	13.26	4.13	6.03	1.0	4.39
Merged-chr9-82871572-3	chr9	82871457	82871657	+	874.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081216, exon 40 of 40)	exon (NM_001081216, exon 40 of 40)	41751.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	11.71	4.53	9.13	26.55	5.32	3.14	10.3	14.27	13.57	7.03	13.06	8.77
Merged-chr1-192094650-2	chr1	192094536	192094736	+	874.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2037.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	17.77	5.79	3.42	6.03	9.41	14.11	2.99	8.69	13.18	15.06	11.05	6.58
Merged-chr2-166195204-3	chr2	166195105	166195305	+	874.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39522.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.25	13.58	13.69	13.27	10.64	18.19	13.29	16.85	14.75	14.06	29.14	9.4
Merged-chr16-31570962-3	chr16	31570847	31571047	+	874.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47186.0	NM_001357871	224098.0	Mm.125439	NM_001357870		Gm536	Gm1777	predicted gene 536	protein-coding	22.61	19.87	25.1	26.14	9.82	15.68	18.93	18.45	8.85	8.03	12.56	9.4
Merged-chr1-13336061-3	chr1	13335961	13336161	+	874.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	36368.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	16.56	10.31	10.27	15.69	5.73	5.02	14.28	12.64	12.78	5.52	16.08	9.08
Merged-chr15-38458477-1	chr15	38458377	38458577	+	874.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32070.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	1.62	5.28	5.13	2.82	9.82	12.23	6.64	8.1	5.51	7.03	5.53	2.51
Merged-chr16-28914415-1	chr16	28914315	28914515	+	874.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	15283.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.0	3.52	0.0	0.4	2.45	1.88	0.0	0.53	21.24	26.61	14.07	8.46
Merged-chr19-9991453-3	chr19	9991349	9991549	+	874.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011913, intron 6 of 11)	ID_B1|SINE|B4	8803.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.88	9.56	6.28	6.84	4.5	15.68	5.65	6.17	8.85	5.52	7.54	8.46
Merged-chr18-73814706-1	chr18	73814606	73814806	+	874.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	686.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	2.42	2.77	2.28	2.82	1.64	3.14	3.99	4.43	6.29	2.01	2.51	1.88
Merged-chr11-118980551-3	chr11	118980450	118980650	+	874.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-7631.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	6.06	13.08	15.97	11.66	11.45	17.25	4.32	10.32	21.44	12.55	19.09	14.41
Merged-chr15-94683876-2	chr15	94683784	94683984	+	874.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	54699.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	1.51	3.42	3.22	6.55	9.09	2.66	10.68	14.55	22.59	14.07	10.02
Merged-chr14-118181020-3	chr14	118180920	118181120	+	874.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43893.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	14.13	8.55	10.84	11.66	17.18	9.41	4.65	16.37	14.55	11.05	31.66	11.59
Merged-chr2-57330948-3	chr2	57330848	57331048	+	874.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	92566.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	16.15	8.3	10.84	17.7	7.36	14.74	13.29	21.17	14.16	9.04	21.1	8.77
Merged-chr3-105894920-3	chr3	105894824	105895024	+	874.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9497.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	8.88	12.07	7.99	4.83	14.73	15.68	8.64	15.08	19.08	12.55	28.64	14.1
Merged-chr11-83058952-3	chr11	83058844	83059044	+	874.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-6168.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	9.29	4.78	18.25	12.07	15.14	26.03	5.98	6.2	14.16	16.07	15.07	15.04
Merged-chr2-36232227-3	chr2	36232157	36232357	+	874.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	1831.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	7.67	7.04	10.27	12.87	18.0	15.05	25.24	29.55	21.05	13.56	30.15	18.17
Merged-chr17-23746988-3	chr17	23746815	23747015	+	874.6000369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1086.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	6.06	10.56	10.84	10.46	11.45	7.53	3.65	13.23	9.64	5.02	14.07	7.52
Merged-chr10-63460537-3	chr10	63460441	63460641	+	874.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164376, intron 1 of 17)	intron (NM_001164376, intron 1 of 17)	3030.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	18.98	12.83	9.13	15.28	9.82	17.56	7.64	7.46	17.51	9.54	24.12	14.41
Merged-chr15-75642460-3	chr15	75642363	75642563	+	874.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25779.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	9.69	11.32	5.7	8.45	18.82	10.03	9.97	13.96	11.6	9.54	9.55	10.65
Merged-chr19-32754873-3	chr19	32754782	32754982	+	874.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2695.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	14.13	6.29	14.26	12.47	15.55	23.2	9.97	15.98	17.7	12.05	10.55	13.47
Merged-chr5-115508925-3	chr5	115508819	115509019	+	874.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	2243.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	10.9	8.3	30.8	23.73	10.64	7.21	25.58	23.36	10.82	13.56	35.68	28.19
Merged-chrX-106015714-3	chrX	106015614	106015814	+	874.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025379)	promoter-TSS (NM_025379)	14.0	NM_025379	66142.0	Mm.197728	NM_025379	ENSMUSG00000031231	Cox7b	1100001F07Rik|1110004F07Rik|C80563	cytochrome c oxidase subunit VIIb	protein-coding	9.69	12.07	9.13	8.04	11.86	19.76	6.31	10.26	29.9	18.58	10.55	18.48
Merged-chr11-70790043-2	chr11	70789961	70790161	+	874.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001045526)	TTS (NM_001045526)	22500.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	7.67	5.03	13.69	2.01	9.0	11.29	5.65	6.76	4.52	14.06	19.6	13.47
Merged-chr16-21666687-1	chr16	21666587	21666787	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	27978.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.04	1.01	6.28	8.45	6.14	7.53	9.63	13.07	2.56	3.01	4.52	1.88
Merged-chr2-156312115-2	chr2	156312005	156312205	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-368.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	18.57	8.8	34.23	10.86	17.18	17.25	14.95	11.8	35.01	16.57	24.12	34.15
Merged-chr6-13839338-3	chr6	13839237	13839437	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145066, intron 1 of 3)	intron (NM_145066, intron 1 of 3)	605.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	5.25	10.56	11.98	10.46	12.68	13.17	6.98	14.52	14.55	8.54	28.14	6.58
Merged-chr2-165060104-2	chr2	165060011	165060211	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	RSINE1|SINE|B4	4475.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	9.69	12.58	3.99	4.42	4.5	18.5	6.64	6.08	18.88	23.6	21.61	7.52
Merged-chr14-70333795-1	chr14	70333695	70333895	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144808, intron 1 of 9)	intron (NM_144808, intron 1 of 9)	14638.0	NM_001135152	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	4.85	1.51	3.99	6.44	11.86	8.15	4.98	7.12	4.13	1.51	5.53	10.65
Merged-chr10-94597862-3	chr10	94597762	94597962	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11663.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	7.27	9.31	14.83	10.46	19.64	19.13	16.94	31.04	18.69	8.03	21.1	17.23
Merged-chr2-21676819-2	chr2	21676708	21676908	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004761, intron 5 of 10)	intron (NM_001004761, intron 5 of 10)	309241.0	NM_001004761	241263.0	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.0	1.51	0.0	0.8	2.45	5.64	8.97	9.93	12.78	5.52	13.06	5.95
Merged-chr17-70122276-1	chr17	70122176	70122376	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	153203.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	7.67	5.53	4.56	19.71	6.95	8.78	22.26	37.57	1.77	0.0	3.01	0.94
Merged-chr2-35661543-2	chr2	35661431	35661631	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001114125, exon 3 of 17)	exon (NM_001114125, exon 3 of 17)	-30463.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	13.33	7.04	4.56	12.47	16.36	5.33	12.62	12.28	5.7	4.52	10.55	5.01
Merged-chr4-134922369-3	chr4	134922270	134922470	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	10.09	11.82	25.67	11.26	11.05	14.74	6.64	9.11	17.11	11.05	9.55	17.86
Merged-chr7-97246620-1	chr7	97246520	97246720	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	79344.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	1.21	2.45	2.2	0.33	5.1	1.97	4.52	1.0	5.01
Merged-chr2-22790582-3	chr2	22790475	22790675	+	874.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	16248.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	23.82	16.35	15.97	9.25	8.59	12.54	17.61	19.29	12.39	11.55	18.09	9.71
Merged-chr5-62843496-3	chr5	62843404	62843604	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	Tigger5b|DNA|TcMar-Tigger	29681.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	12.52	8.05	7.42	12.07	30.68	31.36	18.93	19.71	17.7	13.56	7.03	5.95
Merged-chr17-28433223-3	chr17	28433134	28433334	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 3 of 10)	B4A|SINE|B4	52915.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	8.48	13.33	17.11	12.07	17.59	8.78	12.62	18.67	12.39	12.55	22.61	10.34
Merged-chr8-3648984-3	chr8	3648886	3649086	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6784.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	6.46	8.8	9.7	8.85	17.59	13.8	20.93	16.07	18.49	6.03	23.62	7.83
Merged-chr10-83921433-3	chr10	83921334	83921534	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	179263.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	13.73	9.31	9.7	14.08	6.55	10.03	8.97	14.19	8.85	8.54	19.09	15.66
Merged-chr5-31004404-3	chr5	31004300	31004500	+	874.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35723.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	23.42	14.09	3.99	3.22	22.91	19.13	7.31	7.01	15.74	13.56	21.1	13.16
Merged-chr13-81125351-3	chr13	81125259	81125459	+	874.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	161285.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	20.19	8.05	19.97	9.25	10.23	12.54	17.27	27.79	15.14	9.54	20.6	14.1
Merged-chr5-117348439-2	chr5	117348338	117348538	+	874.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033311, intron 7 of 9)	intron (NM_001033311, intron 7 of 9)	-8867.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	6.06	3.27	2.85	0.8	9.41	9.72	4.32	7.96	21.64	15.57	22.61	13.78
Merged-chr10-4601770-3	chr10	4601631	4601831	+	874.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10258.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	14.94	10.31	8.56	13.67	16.36	16.93	13.62	27.56	14.75	14.56	13.57	7.83
Merged-chr5-110603384-3	chr5	110603235	110603435	+	874.3999630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122639)	promoter-TSS (NM_001122639)	-170.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	7.27	4.53	7.99	5.63	15.14	9.41	9.63	10.65	9.44	9.54	10.55	9.71
Merged-chr16-90995375-3	chr16	90995350	90995550	+	874.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	15645.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	10.5	7.29	11.98	8.04	12.27	10.66	5.98	10.07	8.85	5.02	14.07	5.64
Merged-chr16-8766375-3	chr16	8766291	8766491	+	874.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28049.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	11.31	13.33	7.42	8.85	30.68	21.01	12.29	32.8	23.01	22.59	15.58	14.1
Merged-chr4-82858554-3	chr4	82858463	82858663	+	874.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149737, intron 1 of 7)	intron (NR_149737, intron 1 of 7)	1110.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	7.27	14.59	28.52	14.88	11.86	6.9	3.32	5.21	27.54	14.56	25.12	11.9
Merged-chr11-111067037-3	chr11	111066930	111067130	+	874.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	866.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	18.17	17.1	14.83	4.83	11.05	19.76	5.31	8.41	21.44	18.58	31.15	6.58
Merged-chr11-111165117-3	chr11	111165007	111165207	+	874.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98943.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	10.5	12.58	17.11	25.74	20.46	9.72	8.3	10.85	20.85	16.07	22.61	9.4
Merged-chr12-112578871-2	chr12	112578777	112578977	+	874.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9907.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	7.27	4.53	13.69	0.8	13.5	8.47	12.62	15.62	12.0	15.57	13.57	13.16
Merged-chr6-54171904-1	chr6	54171804	54172004	+	874.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-92954.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.81	1.51	6.85	2.82	8.59	3.14	8.97	14.44	1.57	1.51	2.01	2.51
Merged-chr9-31543538-1	chr9	31543438	31543638	+	874.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79300.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	5.25	7.55	2.28	7.64	10.23	7.21	5.31	12.34	0.0	3.51	8.54	2.51
Merged-chr1-82924811-3	chr1	82924693	82924893	+	874.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85333.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	7.67	10.31	11.41	17.29	23.73	14.74	21.26	27.95	19.08	16.57	21.1	6.89
Merged-chr3-83822016-1	chr3	83821916	83822116	+	874.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	19592.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	2.42	1.51	5.7	4.42	4.91	8.47	14.62	15.17	4.92	3.01	16.58	3.45
Merged-chr14-76748896-1	chr14	76748796	76748996	+	874.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11235.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0.4	2.26	2.28	4.83	6.14	3.45	3.99	7.57	17.9	20.59	15.07	14.1
Merged-chr9-115314001-1	chr9	115313901	115314101	+	874.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-3580.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.4	2.26	3.42	4.02	5.32	1.25	0.0	2.83	20.26	7.03	20.6	9.4
Merged-chr8-82997056-3	chr8	82996954	82997154	+	874.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	133698.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	18.17	7.29	13.12	21.72	30.27	31.36	27.9	34.57	12.98	6.53	15.07	6.27
Merged-chr18-32816825-3	chr18	32816707	32816907	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033206)	promoter-TSS (NR_033206)	-53.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	12.92	9.81	10.84	14.88	12.68	7.53	10.3	11.66	13.77	22.09	14.57	10.02
Merged-chr19-46991320-3	chr19	46991205	46991405	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-21738.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	23.02	11.82	3.42	16.89	7.36	17.87	5.31	12.93	14.16	9.54	16.58	9.08
Merged-chr16-87585780-3	chr16	87585665	87585865	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144854, intron 4 of 4)	L1MB8|LINE|L1	32435.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	9.69	4.78	11.41	9.65	34.36	25.4	34.55	23.83	21.24	14.56	14.07	17.86
Merged-chr17-72919352-3	chr17	72919338	72919538	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029999, intron 1 of 2)	CpG	1133.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	8.08	6.54	7.42	10.05	15.55	9.09	12.95	12.45	11.6	10.54	16.58	10.65
Merged-chr2-5392597-3	chr2	5392509	5392709	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13219.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	16.96	15.34	13.69	16.09	16.77	10.98	9.63	13.35	18.49	10.04	15.58	16.29
Merged-chr5-134180010-3	chr5	134179902	134180102	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3235.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	18.17	10.56	7.99	3.22	20.46	10.35	7.97	9.48	17.7	11.55	7.54	11.28
Merged-chr16-32813136-3	chr16	32813048	32813248	+	874.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2702.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	6.06	12.07	2.28	12.07	10.64	15.37	4.65	7.91	15.93	19.08	14.57	8.46
Merged-chr9-61513482-1	chr9	61513382	61513582	+	874.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	141116.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.23	5.03	2.85	6.84	6.14	1.57	7.97	8.55	0.39	1.0	2.01	2.19
Merged-chr15-66708736-3	chr15	66708621	66708821	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 22 of 47)	MIRc|SINE|MIR	37951.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	12.11	9.56	9.13	15.28	14.32	10.35	12.62	17.27	19.67	15.57	19.09	12.22
Merged-chr14-103929993-3	chr14	103929906	103930106	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85530.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	9.29	7.29	13.69	14.08	17.18	9.41	10.96	18.28	17.7	20.59	11.56	12.22
Merged-chr16-95704201-3	chr16	95704120	95704320	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	1813.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.88	5.79	6.28	10.46	11.05	12.23	9.97	12.59	13.57	10.54	30.65	12.22
Merged-chr15-6909826-3	chr15	6909761	6909961	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35548.0	NM_001310469	18414.0	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	17.36	13.08	15.4	8.04	10.64	14.11	8.97	14.19	23.8	11.55	22.11	14.72
Merged-chr4-10912815-3	chr4	10912695	10912895	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38297.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	11.71	5.53	21.11	13.67	31.91	35.75	9.97	26.05	25.18	31.63	18.59	13.78
Merged-chr1-134418659-3	chr1	134418561	134418761	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2997.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	10.09	6.29	13.12	11.26	23.73	12.23	7.64	15.45	13.18	14.56	16.58	15.98
Merged-chr6-5208028-3	chr6	5207930	5208130	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14084.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	9.69	5.79	11.98	13.27	43.77	33.87	33.55	54.42	10.62	18.58	22.61	14.41
Merged-chr15-68060690-5	chr15	68060569	68060769	+	874.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	198187.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	18.57	12.58	15.4	11.66	12.27	12.54	11.29	24.79	26.36	16.07	19.6	17.23
Merged-chr19-11061045-3	chr19	11060951	11061151	+	874.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-10485.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	22.21	10.31	19.4	13.27	10.23	10.98	8.3	12.53	18.49	12.55	18.09	8.14
Merged-chr10-43919194-3	chr10	43919068	43919268	+	874.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152603, intron 4 of 7)	intron (NR_152603, intron 4 of 7)	17361.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	9.29	12.83	11.98	13.27	14.32	29.16	13.29	22.04	14.16	14.56	20.6	9.71
Merged-chr9-90234002-3	chr9	90233912	90234112	+	874.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36757.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	8.08	11.57	6.85	11.26	23.73	16.62	20.26	16.09	16.92	26.61	23.62	16.92
Merged-chr4-144996006-1	chr4	144995906	144996106	+	874.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	102869.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.06	1.01	7.42	14.08	11.45	10.98	9.3	14.89	4.52	3.51	2.01	3.76
Merged-chr3-14381783-2	chr3	14381679	14381879	+	874.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18662.0	NR_033591	622229.0	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	3.23	15.09	12.55	6.84	5.73	9.09	11.29	15.45	5.51	8.03	7.54	11.28
Merged-chr6-115507571-2	chr6	115507475	115507675	+	874.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-37129.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	7.27	6.29	12.55	4.83	13.09	14.74	13.62	16.71	12.78	13.56	16.58	9.08
Merged-chr10-79883850-3	chr10	79883732	79883932	+	874.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011178)	TTS (NM_011178)	-2480.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	12.92	10.06	7.99	11.66	13.09	21.01	10.3	9.87	24.59	24.6	14.07	9.4
Merged-chr19-34519426-3	chr19	34519319	34519519	+	874.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8055.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.86	14.59	9.13	13.67	16.36	5.02	10.96	14.47	12.98	6.53	16.08	7.52
Merged-chr15-7906661-2	chr15	7906558	7906758	+	874.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081402, intron 13 of 17)	intron (NM_001081402, intron 13 of 17)	91108.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	6.06	6.79	5.7	7.64	8.18	5.64	23.25	29.75	12.19	12.55	18.59	5.95
Merged-chr18-61570964-3	chr18	61570940	61571140	+	874.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357500, intron 4 of 9)	intron (NM_001357500, intron 4 of 9)	15767.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	10.5	6.29	4.56	6.03	6.14	8.78	9.3	10.18	12.78	16.57	12.06	10.02
Merged-chr12-108893434-4	chr12	108893284	108893484	+	874.1041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-173.0	NM_011710	22375.0	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	14.94	19.37	8.56	14.08	5.73	6.9	2.99	10.71	14.75	6.03	5.53	6.27
Merged-chr9-62510744-2	chr9	62510658	62510858	+	874.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175484, intron 1 of 11)	MLT1J|LTR|ERVL-MaLR	26286.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	3.23	5.53	1.71	2.01	15.55	16.62	6.31	21.31	18.1	12.55	15.58	4.07
Merged-chr6-108784960-3	chr6	108784847	108785047	+	874.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026011, intron 1 of 6)	MIRb|SINE|MIR	1888.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	8.48	8.8	6.85	12.87	18.0	16.31	6.31	16.51	14.95	15.57	16.58	2.51
Merged-chr11-3137463-3	chr11	3137372	3137572	+	874.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	13451.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	24.23	22.39	23.96	18.5	30.27	27.59	31.56	17.5	9.24	17.57	14.57	5.95
Merged-chr13-100145344-3	chr13	100145270	100145470	+	874.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	20515.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	8.88	5.28	22.82	13.67	15.55	10.35	11.29	17.8	14.95	15.57	21.1	13.78
Merged-chr1-191850952-3	chr1	191850844	191851044	+	874.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29471.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	9.69	6.54	14.26	14.88	7.36	11.92	21.26	21.39	13.77	6.03	25.63	15.04
Merged-chr16-30024872-3	chr16	30024778	30024978	+	874.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14601.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	12.11	7.04	4.56	8.04	15.96	17.25	15.61	22.79	19.28	23.6	19.6	8.14
Merged-chr4-136056246-3	chr4	136056146	136056346	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-2875.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	13.73	12.58	6.85	4.83	10.64	14.42	2.33	8.78	11.21	7.53	11.05	8.14
Merged-chr1-91099064-3	chr1	91098966	91099166	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	45622.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	26.65	15.59	8.56	17.29	17.18	13.8	12.62	13.21	12.39	12.05	25.63	12.53
Merged-chr19-32954419-3	chr19	32954314	32954514	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196837.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	12.92	10.56	6.85	15.28	8.59	11.92	5.98	9.11	12.98	13.05	18.09	12.22
Merged-chr15-28413729-3	chr15	28413608	28413808	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	209942.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	5.25	8.8	8.56	14.48	8.59	12.86	10.3	9.67	14.55	15.57	14.57	5.64
Merged-chr17-50469286-3	chr17	50469197	50469397	+	874.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40250.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	9.69	9.56	6.85	4.42	11.86	12.86	9.97	14.92	14.75	14.06	11.56	5.01
Merged-chr12-111386697-3	chr12	111386574	111386774	+	874.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8956.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	20.59	21.63	13.69	10.86	13.09	23.52	7.31	9.7	12.98	11.55	11.56	12.22
Merged-chr3-108895820-3	chr3	108895721	108895921	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5813.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	16.96	5.28	11.41	14.48	14.73	7.84	5.65	14.44	28.32	16.07	17.59	15.66
Merged-chr11-117191697-1	chr11	117191597	117191797	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7964.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	11.71	4.02	1.14	1.61	11.45	11.6	8.3	8.8	9.05	6.53	8.04	5.01
Merged-chr15-83496089-1	chr15	83495989	83496189	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357953, intron 9 of 11)	intron (NM_001357953, intron 9 of 11)	14818.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	2.42	4.78	2.28	1.21	5.73	9.41	3.99	6.7	2.56	2.51	10.55	4.39
Merged-chr6-135980990-2	chr6	135980893	135981093	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	192518.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	1.62	2.52	2.28	3.62	5.32	5.02	2.99	10.15	25.96	27.11	29.14	13.47
Merged-chr1-82816196-2	chr1	82816076	82816276	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23284.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	6.06	5.53	10.27	1.61	11.86	2.82	4.65	12.98	12.59	7.53	7.54	10.02
Merged-chr2-90581322-1	chr2	90581222	90581422	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	-675.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.02	3.27	10.27	1.61	4.91	8.78	6.31	7.54	4.72	11.55	5.02	12.22
Merged-chr2-16310872-1	chr2	16310772	16310972	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45432.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	6.06	2.52	7.99	1.61	9.41	2.51	7.97	12.9	2.36	6.53	6.03	4.7
Merged-chr2-113645906-3	chr2	113645810	113646010	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39180.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	20.59	16.1	11.41	9.65	26.59	13.17	11.96	21.59	27.73	40.67	13.06	9.4
Merged-chr2-11398600-1	chr2	11398500	11398700	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040615)	promoter-TSS (NR_040615)	-100.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	4.85	5.53	1.14	0.4	1.23	3.76	5.65	10.54	5.31	4.02	9.04	1.88
Merged-chr13-95685903-2	chr13	95685802	95686002	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 14 of 35)	intron (NM_027711, intron 14 of 35)	-11018.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	12.52	5.03	5.13	14.48	22.5	22.58	20.59	20.05	3.93	5.02	7.54	4.07
Merged-chr6-120463865-3	chr6	120463758	120463958	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	661.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	10.09	7.8	8.56	6.44	4.5	15.37	10.96	5.38	8.46	5.02	12.56	8.14
Merged-chr13-58160448-1	chr13	58160348	58160548	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001048060, intron 3 of 3)	intron (NM_001048060, intron 3 of 3)	2799.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	13.33	10.82	8.56	7.24	4.5	4.08	2.33	3.31	5.31	6.53	12.56	2.19
Merged-chr9-13312972-1	chr9	13312872	13313072	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66016.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	2.42	4.28	5.7	2.82	4.91	1.57	6.64	15.2	1.38	1.51	4.02	0.0
Merged-chr1-59465413-2	chr1	59465305	59465505	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16742.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	6.06	6.29	13.12	4.42	9.41	2.2	4.32	8.92	3.54	3.01	4.02	5.95
Merged-chr10-37290245-3	chr10	37290131	37290331	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-151305.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	15.75	8.3	6.85	18.1	18.82	7.84	16.28	31.54	15.54	12.55	10.55	5.95
Merged-chr8-22496820-1	chr8	22496720	22496920	+	874.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011394, intron 1 of 10)	B2_Mm1a|SINE|B2	-19941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.03	5.52	6.03	6.58
Merged-chr13-21722490-1	chr13	21722390	21722590	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178200)	TTS (NM_178200)	446.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	5.65	6.54	3.99	4.42	4.09	7.84	2.33	8.52	9.44	4.02	12.06	9.4
Merged-chr3-37502744-3	chr3	37502630	37502830	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82780.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	47.24	47.04	43.93	37.81	8.18	5.02	3.99	11.61	14.55	8.03	13.06	6.27
Merged-chr5-135630690-1	chr5	135630590	135630790	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1964.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	7.27	4.02	0.57	0.4	15.96	10.35	7.64	11.89	3.93	6.53	11.05	0.63
Merged-chr9-120068334-2	chr9	120068233	120068433	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-37.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	19.38	8.05	5.7	6.84	13.09	12.54	16.28	14.3	2.95	1.51	1.0	2.82
Merged-chr6-147606895-1	chr6	147606795	147606995	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025911, exon 12 of 13)	exon (NM_025911, exon 12 of 13)	-83346.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	2.42	1.26	5.13	1.61	0.0	3.76	6.64	5.83	3.54	1.51	4.02	6.89
Merged-chr2-13409961-3	chr2	13409908	13410108	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	81868.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.04	5.53	3.42	10.46	14.73	13.8	11.29	9.7	15.34	16.57	12.56	12.84
Merged-chr15-12037435-3	chr15	12037319	12037519	+	873.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41412.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	23.42	10.31	15.4	14.08	21.27	10.98	3.99	11.55	16.72	15.57	14.07	8.77
Merged-chr7-45068110-3	chr7	45068020	45068220	+	873.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163684, intron 1 of 8)	B2_Mm2|SINE|B2	5691.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	13.73	16.1	11.98	13.67	13.91	19.76	10.96	16.57	12.0	12.55	12.06	12.22
Merged-chr7-3442864-3	chr7	3442795	3442995	+	873.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18233.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	11.71	14.84	13.69	15.28	14.73	26.97	9.3	10.71	9.44	9.54	14.07	11.28
Merged-chr1-13424712-3	chr1	13424619	13424819	+	873.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-50636.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	9.69	11.32	15.97	22.52	11.86	15.99	5.98	16.77	25.18	18.58	23.62	14.1
Merged-chr1-92753887-2	chr1	92753794	92753994	+	873.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-77751.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	11.31	6.79	19.4	16.49	7.36	4.39	20.59	22.71	5.7	2.51	7.54	5.64
Merged-chr8-123319876-3	chr8	123319724	123319924	+	873.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1248.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	6.86	15.34	5.13	10.46	6.95	17.25	5.31	2.69	17.9	13.56	20.1	16.29
Merged-chr5-64231053-3	chr5	64230968	64231168	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	711.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.5	11.07	11.98	7.64	8.59	18.5	9.63	11.97	17.9	15.57	12.56	15.04
Merged-chr12-3238846-3	chr12	3238691	3238891	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	3000.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.85	8.55	0.57	5.63	4.5	11.6	4.98	4.15	11.8	9.04	9.55	3.76
Merged-chr2-117087714-3	chr2	117087634	117087834	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33337.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	21.0	10.31	13.69	11.26	18.0	30.1	16.61	21.95	22.23	16.07	18.59	10.65
Merged-chr10-59578200-3	chr10	59578046	59578246	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38546.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	3.23	4.28	10.27	13.67	9.0	12.86	8.3	12.03	5.7	7.53	6.53	7.21
Merged-chr13-93977259-4	chr13	93977103	93977303	+	873.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-80593.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.63	4.28	1.14	6.44	6.55	5.64	9.63	8.3	3.54	2.01	4.52	6.58
Merged-chr2-148478489-3	chr2	148478375	148478575	+	873.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34940.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	38.36	19.62	17.11	37.4	32.32	9.41	19.93	20.69	9.05	12.55	12.56	8.46
Merged-chr6-26304393-3	chr6	26304322	26304522	+	873.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	372996.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	9.69	8.55	13.12	12.07	15.96	17.56	27.9	33.93	18.29	12.55	18.09	20.68
Merged-chr2-164953430-2	chr2	164953330	164953530	+	873.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013599, intron 11 of 12)	CpG	5211.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	9.69	8.3	4.56	0.8	6.55	6.27	1.99	3.28	10.03	15.06	18.09	16.92
Merged-chr2-155273503-1	chr2	155273403	155273603	+	873.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2861.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.0	3.52	1.14	2.41	24.96	25.71	19.6	10.09	3.93	4.02	0.5	0.31
Merged-chr15-67992651-1	chr15	67992551	67992751	+	873.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	266205.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.4	0.75	5.13	1.61	11.05	15.37	7.97	10.29	0.2	2.01	5.53	1.57
Merged-chr9-96535868-2	chr9	96535732	96535932	+	873.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-57157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.44	5.28	0.57	5.63	6.55	6.59	2.99	6.08	7.08	11.05	19.09	4.39
Merged-chr14-54433720-3	chr14	54433628	54433828	+	873.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	2130.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	6.46	9.06	10.27	5.63	15.14	10.98	13.95	7.77	12.19	12.05	17.59	7.52
Merged-chr19-16142650-3	chr19	16142559	16142759	+	873.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9828.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.67	10.31	14.83	18.1	13.91	13.48	6.31	15.9	16.52	13.56	16.58	13.47
Merged-chr3-51359118-5	chr3	51358966	51359166	+	873.820007	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18422.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	9.29	5.53	11.41	11.26	11.05	13.8	3.99	7.77	9.44	10.54	17.59	13.47
Merged-chr1-173401613-3	chr1	173401506	173401706	+	873.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18998.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	12.52	11.57	9.7	16.09	13.09	11.92	9.63	12.34	15.14	15.06	11.56	7.21
Merged-chr8-90881029-3	chr8	90880931	90881131	+	873.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-51218.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	11.31	11.07	30.23	17.29	12.27	5.02	7.64	9.28	10.82	12.05	20.6	5.33
Merged-chr12-112800672-3	chr12	112800553	112800753	+	873.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8322.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	15.34	6.29	9.13	2.41	10.64	16.93	2.66	9.98	12.39	16.07	12.06	8.14
Merged-chr11-106657086-3	chr11	106656991	106657191	+	873.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-44161.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	13.73	8.05	6.85	10.46	22.91	16.93	8.64	16.74	15.54	10.04	16.08	11.9
Merged-chr14-47533851-3	chr14	47533753	47533953	+	873.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34581.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	8.48	9.56	6.85	8.04	11.86	8.78	5.31	11.64	39.93	50.21	34.17	34.15
Merged-chr7-99053062-3	chr7	99052964	99053164	+	873.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	88080.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	16.96	4.02	11.98	13.67	30.27	14.42	8.64	17.52	18.49	11.55	12.56	5.95
Merged-chr1-61649230-3	chr1	61649125	61649325	+	873.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	10401.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	5.65	19.87	12.55	5.23	33.55	47.98	39.53	41.5	14.55	3.51	16.08	10.65
Merged-chr13-51418747-3	chr13	51418641	51418841	+	873.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010101, exon 2 of 2)	5' UTR (NM_010101, exon 2 of 2)	10123.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	19.38	14.59	9.7	6.84	13.5	15.37	10.3	9.84	24.39	23.6	16.08	8.46
Merged-chr19-40722546-2	chr19	40722434	40722634	+	873.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	62764.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	9.69	11.32	2.28	2.82	10.64	6.59	4.65	6.9	8.26	5.02	6.53	6.58
Merged-chr17-48408562-2	chr17	48408440	48408640	+	873.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1280.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	10.9	4.02	7.99	16.89	6.95	4.39	8.97	8.16	8.06	15.06	6.03	10.02
Merged-chr1-176933423-3	chr1	176933329	176933529	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 14 of 18)	intron (NM_001357390, intron 14 of 18)	-97296.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	13.33	9.06	19.97	14.48	14.32	22.89	11.96	29.61	10.23	11.55	11.05	15.04
Merged-chr5-135010713-3	chr5	135010599	135010799	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145215, intron 2 of 5)	intron (NM_145215, intron 2 of 5)	1243.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	12.92	8.8	18.83	11.26	10.64	21.64	6.98	9.28	35.6	12.55	14.07	14.1
Merged-chr18-20645447-3	chr18	20645363	20645563	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	RMER5|LTR|ERV1	-19787.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	4.85	10.06	5.7	8.85	10.23	22.58	6.64	14.66	22.62	15.06	21.1	15.66
Merged-chr11-86582394-3	chr11	86582339	86582539	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	1719.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	13.73	11.32	13.12	8.85	9.0	18.19	12.95	8.16	25.37	22.09	10.05	15.35
Merged-chr18-11353232-1	chr18	11353132	11353332	+	873.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-280044.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	7.27	9.06	5.13	5.23	9.82	15.68	6.98	10.01	3.34	5.02	3.52	4.7
Merged-chr1-164218280-1	chr1	164218180	164218380	+	873.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007976, intron 24 of 24)	intron (NM_007976, intron 24 of 24)	-30766.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	3.63	10.06	5.7	4.02	11.86	12.23	12.95	9.67	1.18	4.52	1.51	5.01
Merged-chr6-136451089-3	chr6	136450988	136451188	+	873.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35519.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	7.67	11.07	16.54	11.26	9.82	5.33	8.97	17.94	16.92	11.05	19.09	13.78
Merged-chr8-125337035-1	chr8	125336935	125337135	+	873.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	155798.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.4	2.01	1.14	4.02	1.23	1.57	1.33	1.82	12.78	13.05	20.6	12.84
Merged-chr9-45229530-3	chr9	45229397	45229597	+	873.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-25422.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	20.19	6.04	10.27	10.46	11.05	23.2	11.96	4.99	31.67	21.09	16.08	13.47
Merged-chr10-88578829-3	chr10	88578747	88578947	+	873.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	26305.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	15.75	8.55	9.13	11.26	18.0	18.81	8.64	19.82	20.06	21.59	23.62	11.59
Merged-chr3-84440105-1	chr3	84440005	84440205	+	873.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	39386.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.81	1.01	0.0	2.82	4.91	4.7	7.64	12.28	2.95	3.51	4.02	0.94
Merged-chr1-58669882-3	chr1	58669737	58669937	+	873.6277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347056, intron 7 of 13)	intron (NM_001347056, intron 7 of 13)	17196.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	12.52	8.3	18.83	13.67	9.0	15.68	15.28	8.19	15.34	13.05	12.06	10.34
Merged-chr11-106510317-3	chr11	106510218	106510418	+	873.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 10 of 11)	B1_Mur4|SINE|Alu	9327.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	23.42	17.86	23.39	23.33	16.77	21.95	11.96	5.36	26.95	10.04	9.55	10.34
Merged-chr8-26104679-3	chr8	26104580	26104780	+	873.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207659, intron 2 of 21)	intron (NM_207659, intron 2 of 21)	14544.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	9.69	9.31	10.84	13.67	20.05	16.31	15.28	19.21	15.34	14.06	26.13	12.84
Merged-chr11-78751661-3	chr11	78751549	78751749	+	873.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197989)	promoter-TSS (NM_197989)	80.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	20.59	10.31	12.55	6.03	17.18	19.44	11.63	11.07	6.69	8.03	16.08	10.02
Merged-chr2-147023791-3	chr2	147023715	147023915	+	873.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	10816.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	13.73	7.29	33.66	21.32	20.46	6.9	14.95	34.77	11.01	11.55	14.57	5.33
Merged-chr2-119359649-2	chr2	119359557	119359757	+	873.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8415.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	20.19	16.35	14.26	12.87	16.77	14.11	11.63	5.97	1.97	1.0	2.01	0.0
Merged-chr9-62838035-3	chr9	62837936	62838136	+	873.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-751.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	11.31	7.8	3.99	18.5	13.5	14.74	4.65	15.06	11.01	10.04	19.6	20.05
Merged-chr4-130520400-3	chr4	130520295	130520495	+	873.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53641.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	22.21	16.1	7.99	7.24	21.27	34.81	9.97	14.83	27.54	31.13	42.21	14.72
Merged-chr2-73892190-3	chr2	73892063	73892263	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025093, intron 1 of 14)	CpG	476.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	12.11	11.07	11.41	2.41	6.55	9.72	11.29	7.04	14.55	6.03	19.09	15.35
Merged-chr3-130818898-3	chr3	130818795	130818995	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88497.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	6.06	10.06	9.13	14.88	12.68	16.62	9.3	18.64	20.46	7.03	34.17	8.14
Merged-chr5-110447988-3	chr5	110447876	110448076	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001142642, exon 1 of 19)	exon (NM_001142642, exon 1 of 19)	527.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	14.94	9.81	15.4	9.65	6.55	11.92	24.58	10.46	12.98	11.55	15.58	17.54
Merged-chr18-80150171-3	chr18	80150077	80150277	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175028, intron 1 of 3)	intron (NM_175028, intron 1 of 3)	1305.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	4.85	10.06	10.27	13.27	14.32	15.99	5.98	14.78	13.77	12.55	20.6	10.34
Merged-chr19-5692331-3	chr19	5692205	5692405	+	873.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3174.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	19.79	16.1	11.98	10.05	13.5	20.7	6.31	6.59	15.93	17.57	23.62	11.9
Merged-chr13-51307782-1	chr13	51307682	51307882	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100836.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	2.02	3.27	1.71	0.8	18.82	10.35	10.3	11.19	7.28	15.57	10.05	6.27
Merged-chr16-38093224-1	chr16	38093124	38093324	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-3964.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.42	2.01	2.85	8.04	0.82	5.96	7.64	11.07	1.77	4.02	9.55	3.45
Merged-chr6-29279159-3	chr6	29279059	29279259	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1982.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	16.15	12.83	5.13	10.05	13.91	19.13	6.31	12.87	14.95	10.04	17.08	10.65
Merged-chr5-72241727-1	chr5	72241627	72241827	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 4 of 22)	intron (NR_003966, intron 4 of 22)	38384.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.67	2.01	2.28	10.05	11.45	3.14	6.31	15.06	8.06	0.5	3.01	5.64
Merged-chr11-62007523-2	chr11	62007476	62007676	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	50813.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.23	5.28	8.56	2.82	3.27	5.33	1.66	3.45	4.13	11.55	7.54	6.58
Merged-chr1-37029336-3	chr1	37029317	37029517	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-89890.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.25	5.53	1.71	1.61	3.68	5.64	4.65	3.93	9.83	9.54	13.57	5.33
Merged-chr11-116071603-3	chr11	116071516	116071716	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009573, intron 13 of 32)	intron (NM_001009573, intron 13 of 32)	6345.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	10.5	10.06	18.25	5.63	6.55	15.05	3.32	6.14	15.14	16.07	14.57	13.16
Merged-chr12-113098130-2	chr12	113098038	113098238	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054081)	promoter-TSS (NM_054081)	-140.0	NM_001346696	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	3.63	9.81	10.27	7.24	13.91	10.98	3.65	11.44	8.26	12.55	15.58	6.58
Merged-chr13-52580567-3	chr13	52580449	52580649	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	-2888.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.65	14.84	7.99	12.47	13.5	15.68	8.97	18.22	14.95	18.58	14.57	12.84
Merged-chr2-133407932-1	chr2	133407832	133408032	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144227.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.86	6.79	5.13	2.41	8.59	10.03	16.94	15.48	3.54	6.03	4.02	4.39
Merged-chr13-19843573-2	chr13	19843488	19843688	+	873.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19331.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	15.75	13.33	21.11	11.26	17.18	18.5	8.3	15.56	19.28	7.03	10.05	1.88
Merged-chr17-30137316-3	chr17	30137208	30137408	+	873.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151442, intron 2 of 3)	L1M3|LINE|L1	132269.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.63	10.56	9.13	15.28	11.45	15.37	5.98	18.25	17.31	4.02	17.08	7.21
Merged-chr2-117231450-3	chr2	117231356	117231556	+	873.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18283.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	17.36	8.55	15.97	9.25	23.32	14.42	9.97	18.9	18.29	13.56	30.15	8.46
Merged-chr7-45638837-1	chr7	45638737	45638937	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152217)	promoter-TSS (NR_152217)	-79.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	6.46	3.77	2.28	2.82	6.55	10.03	7.64	10.68	7.08	2.51	5.53	5.01
Merged-chr7-130969261-1	chr7	130969161	130969361	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	33058.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	10.5	7.29	5.13	10.05	5.32	1.88	3.99	6.0	3.93	9.54	16.58	6.27
Merged-chr9-20901621-1	chr9	20901521	20901721	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3031.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	8.08	6.29	4.56	10.05	2.86	12.23	5.31	9.11	14.75	3.51	9.55	5.01
Merged-chr12-119371512-3	chr12	119371419	119371619	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71891.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	15.34	9.81	6.85	3.22	15.55	31.98	11.29	10.01	22.23	22.09	13.06	4.7
Merged-chr7-25006801-1	chr7	25006701	25006901	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290469)	promoter-TSS (NM_001290469)	-864.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	3.63	1.76	9.7	0.8	10.64	10.35	2.99	11.36	4.72	3.51	3.52	2.51
Merged-chr6-87804937-3	chr6	87804840	87805040	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4817.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	16.96	6.54	18.25	12.07	11.45	10.03	11.63	8.66	11.41	7.03	19.09	12.22
Merged-chr18-34140076-3	chr18	34139980	34140180	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-80904.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	12.11	9.06	18.83	30.16	14.32	10.03	5.65	16.18	15.34	22.59	21.61	14.1
Merged-chr8-95832836-3	chr8	95832720	95832920	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20671.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	11.31	8.8	5.7	7.24	4.91	10.66	4.32	9.17	19.47	17.07	21.61	17.54
Merged-chr11-50291563-3	chr11	50291448	50291648	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	788.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	8.08	11.57	9.7	4.83	4.09	14.11	3.65	8.07	13.57	20.59	11.05	9.71
Merged-chr7-114294127-1	chr7	114294027	114294227	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.85	4.28	7.99	9.65	11.45	6.27	9.63	9.22	0.0	1.51	1.0	0.63
Merged-chr3-136708443-3	chr3	136708348	136708548	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	38382.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	13.33	4.78	16.54	18.9	11.05	11.92	10.3	10.26	20.65	12.55	24.12	12.84
Merged-chr2-127831920-3	chr2	127831834	127832034	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-75.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	14.94	7.04	7.99	4.83	18.0	11.6	5.31	15.25	25.96	17.57	26.63	16.92
Merged-chr18-47330395-1	chr18	47330295	47330495	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	38473.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.81	1.01	9.13	6.44	5.73	4.39	9.63	5.38	4.33	7.53	2.51	1.57
Merged-chr6-134366851-3	chr6	134366749	134366949	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-29480.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	29.88	16.1	34.23	15.28	38.46	26.34	21.59	33.73	16.52	11.05	13.06	6.89
Merged-chr1-167342014-3	chr1	167341901	167342101	+	873.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7990.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	13.73	10.06	5.7	11.26	26.18	16.62	10.96	22.26	11.21	11.05	15.07	10.65
Merged-chr19-5809057-3	chr19	5808955	5809155	+	873.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6383.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	9.69	11.32	14.26	9.65	17.18	28.85	12.95	12.25	15.93	21.09	8.54	10.02
Merged-chr5-5358110-2	chr5	5357984	5358184	+	873.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	22167.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.04	4.53	3.99	2.82	8.18	7.84	10.96	8.8	10.82	9.54	14.57	9.4
Merged-chr6-83632928-3	chr6	83632854	83633054	+	873.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	23162.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	8.08	9.56	11.98	8.85	21.68	4.08	24.58	27.2	7.08	10.04	12.06	10.65
Merged-chr13-46043205-1	chr13	46043105	46043305	+	873.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	-78214.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	9.29	5.28	2.85	5.23	14.32	12.86	12.95	4.85	5.51	11.55	6.53	8.14
Merged-chr2-143847050-3	chr2	143846923	143847123	+	873.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291061, intron 3 of 7)	intron (NM_001291061, intron 3 of 7)	16150.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	8.08	8.3	18.25	10.05	11.05	26.97	14.62	17.33	7.28	7.03	9.55	13.47
Merged-chr7-66175951-3	chr7	66175849	66176049	+	873.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66434.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	7.67	6.79	5.7	3.22	6.14	9.41	9.97	11.58	19.28	7.03	20.1	6.27
Merged-chr4-88464781-3	chr4	88464669	88464869	+	873.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25843.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	13.73	13.58	16.54	21.72	13.91	7.53	12.95	16.54	25.37	22.59	24.62	7.83
Merged-chr17-6476886-3	chr17	6476746	6476946	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25852.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	16.15	16.1	21.11	16.49	33.14	26.97	26.57	19.4	9.64	10.04	5.53	5.95
Merged-chr7-16628306-3	chr7	16628212	16628412	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136929, intron 2 of 2)	intron (NR_136929, intron 2 of 2)	-13319.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	16.96	15.09	5.7	11.66	7.36	12.54	8.3	14.83	17.11	14.06	18.09	16.29
Merged-chr4-138207093-3	chr4	138206990	138207190	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172703)	TTS (NM_172703)	-9522.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	46.03	29.18	42.78	36.6	42.14	46.41	21.92	35.55	11.21	5.52	12.06	6.58
Merged-chr5-64463838-3	chr5	64463746	64463946	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040681, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	4096.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	31.5	21.38	33.09	16.89	5.32	9.41	8.3	4.68	42.48	58.75	51.25	23.49
Merged-chr5-64160977-2	chr5	64160874	64161074	+	873.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 1 of 19)	intron (NM_019636, intron 1 of 19)	714.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.23	3.02	11.41	3.22	13.09	15.05	7.31	9.34	16.33	19.58	14.57	4.7
Merged-chr1-59608584-3	chr1	59608494	59608694	+	873.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	62240.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	11.31	17.1	14.83	10.46	25.36	16.31	3.99	10.65	26.55	8.03	27.13	15.35
Merged-chr1-156676370-3	chr1	156676273	156676473	+	873.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2034.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.85	10.82	14.26	7.24	12.27	12.86	5.31	6.64	31.67	19.08	31.15	20.36
Merged-chr4-139232622-3	chr4	139232522	139232722	+	873.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38511.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	10.09	7.55	0.57	9.65	13.5	11.29	5.65	15.98	11.6	9.54	18.09	8.14
Merged-chr19-55552931-2	chr19	55552834	55553034	+	873.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	149270.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	15.75	9.31	11.41	16.89	7.77	9.41	10.63	11.5	7.28	3.51	4.52	6.89
Merged-chr10-118370635-3	chr10	118370542	118370742	+	873.072205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70404.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	18.57	8.05	12.55	10.05	26.59	17.56	9.3	16.96	34.22	16.07	38.19	16.92
Merged-chr6-148945315-8	chr6	148945322	148945522	+	873.05835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355645)	promoter-TSS (NM_001355645)	565.0	NR_144294	109163.0	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	5.25	4.53	6.28	7.64	8.18	8.47	4.32	10.15	11.41	13.05	7.54	9.4
Merged-chr1-152597077-3	chr1	152596993	152597193	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	28124.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	9.29	14.34	9.13	17.7	42.14	24.15	12.29	21.84	13.57	17.07	11.56	15.66
Merged-chr9-44233377-3	chr9	44233306	44233506	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	640.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	10.09	14.59	10.27	2.82	9.0	8.78	3.65	9.79	17.7	16.07	16.58	10.34
Merged-chr12-100053813-3	chr12	100053732	100053932	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	-58499.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	10.9	8.3	9.7	4.42	12.68	34.49	7.97	14.5	28.72	6.03	20.1	15.35
Merged-chr15-65872743-3	chr15	65872627	65872827	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001356582, exon 23 of 23)	3' UTR (NM_001356582, exon 23 of 23)	39527.0	NM_001347038	18256.0	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	5.65	16.85	18.25	16.89	24.14	10.66	12.95	14.97	8.46	7.53	13.06	12.53
Merged-chr2-11544554-3	chr2	11544465	11544665	+	873.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	9364.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	11.71	10.82	18.83	11.66	12.27	9.72	11.96	17.58	17.51	4.52	13.57	10.65
Merged-chr17-29848962-3	chr17	29848888	29849088	+	873.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 6 of 15)	intron (NM_001081160, intron 6 of 15)	38894.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	17.36	13.83	4.56	10.05	18.0	16.93	4.65	16.37	17.9	16.57	18.09	9.08
Merged-chr11-74650433-1	chr11	74650333	74650533	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	938.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.85	5.53	0.0	5.23	9.82	3.14	1.66	8.86	6.29	7.03	1.51	5.95
Merged-chr3-144584931-3	chr3	144584839	144585039	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14512.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	14.94	8.05	14.83	18.5	7.36	5.02	18.93	17.44	11.8	6.03	21.1	8.46
Merged-chr17-24162228-1	chr17	24162128	24162328	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	1505.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	6.46	4.78	2.28	3.22	11.45	10.35	7.97	10.21	0.79	3.01	1.51	2.19
Merged-chr16-21915642-1	chr16	21915542	21915742	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	23673.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	4.85	1.76	1.71	4.83	8.18	5.02	2.66	10.21	6.49	5.02	6.03	1.88
Merged-chr2-166190178-1	chr2	166190078	166190278	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-34495.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	2.42	1.01	0.0	1.61	8.59	1.88	5.65	4.85	3.93	0.5	4.02	1.88
Merged-chr18-46457194-1	chr18	46457094	46457294	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8622.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.83	5.03	5.7	3.22	4.09	6.9	7.31	8.21	6.1	7.53	5.02	0.63
Merged-chr10-86655594-1	chr10	86655494	86655694	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-29933.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	4.04	9.31	18.25	5.63	1.23	8.47	1.99	1.82	4.33	2.51	1.51	5.95
Merged-chr10-63243279-1	chr10	63243179	63243379	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-518.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	7.27	6.54	9.13	10.05	13.5	3.14	4.98	7.51	9.44	16.07	4.52	3.76
Merged-chr7-44430477-1	chr7	44430377	44430577	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12010.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	9.29	9.31	7.99	2.01	2.86	6.27	1.66	5.55	6.49	5.52	6.53	3.45
Merged-chr6-129631241-2	chr6	129631149	129631349	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-7385.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	2.02	2.52	5.13	4.02	2.05	2.51	6.98	8.16	11.41	2.01	13.57	4.7
Merged-chr5-43423202-2	chr5	43423105	43423305	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92364.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	6.06	2.26	6.85	9.65	8.18	10.35	11.29	14.33	9.44	9.04	21.61	10.34
Merged-chr9-55310365-3	chr9	55310250	55310450	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16563.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	13.73	1.76	15.4	8.04	26.18	14.11	34.88	22.79	12.19	23.1	10.05	5.95
Merged-chr2-18959250-1	chr2	18959150	18959350	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	38871.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	1.62	4.02	0.0	2.01	7.77	4.39	3.99	8.24	3.15	3.01	3.52	0.31
Merged-chr19-57623877-1	chr19	57623777	57623977	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 1 of 28)	intron (NM_181415, intron 1 of 28)	12843.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	1.21	2.01	1.14	3.62	9.0	9.41	17.27	13.54	2.95	1.51	4.02	1.88
Merged-chr17-36930458-1	chr17	36930358	36930558	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045439, intron 2 of 2)	intron (NR_045439, intron 2 of 2)	6666.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	0.4	0.25	0.0	0.8	7.36	3.45	3.65	10.63	0.39	0.0	1.0	0.0
Merged-chr6-136827384-3	chr6	136827199	136827399	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021714, intron 1 of 11)	intron (NM_021714, intron 1 of 11)	917.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	8.08	4.78	12.55	9.65	10.23	14.74	7.64	11.69	11.21	13.56	14.57	10.65
Merged-chr10-99633379-2	chr10	99633285	99633485	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	B4|SINE|B4	8535.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	10.5	4.78	6.85	8.45	8.59	2.51	2.66	12.7	7.67	7.53	7.03	5.01
Merged-chr11-100570626-3	chr11	100570516	100570716	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-4323.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	13.33	3.77	6.28	7.24	13.5	15.05	3.99	9.7	14.16	11.55	17.59	17.54
Merged-chr17-32617437-1	chr17	32617337	32617537	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MuLV-int|LTR|ERV1	-3882.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	4.85	3.77	2.28	3.22	8.18	4.08	3.32	6.9	6.88	10.54	8.54	3.13
Merged-chr19-21785942-3	chr19	21785845	21786045	+	872.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	7605.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	24.23	18.86	30.8	28.15	35.59	13.17	13.29	24.06	12.0	9.54	12.06	6.89
Merged-chr4-138426889-3	chr4	138426793	138426993	+	872.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7779.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	8.08	23.9	18.83	8.85	17.59	26.65	5.65	11.5	24.19	17.57	13.06	15.66
Merged-chr7-6127267-3	chr7	6127157	6127357	+	872.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28714.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	16.96	14.84	10.84	17.29	20.86	21.01	6.64	21.64	30.29	19.58	16.58	10.34
Merged-chr10-81417004-3	chr10	81416859	81417059	+	872.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106141)	promoter-TSS (NR_106141)	-662.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	8.48	4.78	3.99	8.04	10.64	11.29	5.65	9.87	16.92	12.05	24.12	9.08
Merged-chr11-26140219-3	chr11	26140125	26140325	+	872.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	L1MA6|LINE|L1	-62015.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	6.46	8.3	9.7	10.46	55.23	56.44	48.16	77.61	95.98	89.37	112.05	36.65
Merged-chr7-80454965-3	chr7	80454847	80455047	+	872.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007550)	TTS (NM_007550)	-49511.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	6.46	12.58	10.27	3.22	7.77	21.64	10.3	9.62	24.19	26.61	19.6	9.08
Merged-chr6-145211642-3	chr6	145211519	145211719	+	872.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177222)	promoter-TSS (NM_177222)	472.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	9.69	10.56	9.7	4.02	4.91	10.98	9.3	10.46	10.23	16.07	13.06	14.72
Merged-chr10-41615625-3	chr10	41615532	41615732	+	872.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 24 of 47)	intron (NM_001358562, intron 24 of 47)	47616.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	10.09	7.8	18.25	17.29	15.14	8.47	7.64	19.12	24.59	23.6	22.11	25.69
Merged-chr7-101379927-3	chr7	101379822	101380022	+	872.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1800.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	25.44	12.32	3.42	5.63	17.18	21.01	8.64	13.07	16.33	16.07	9.04	10.65
Merged-chr11-68430681-3	chr11	68430598	68430798	+	872.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1427.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	22.21	15.85	12.55	9.65	30.68	46.41	19.6	24.81	26.36	28.62	13.06	12.84
Merged-chr11-48858151-3	chr11	48858072	48858272	+	872.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13248.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	11.71	10.82	8.56	11.66	9.82	12.86	7.97	7.91	14.95	15.06	17.08	7.52
Merged-chr15-76670208-2	chr15	76670112	76670312	+	872.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-264.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	14.54	11.57	3.99	2.82	2.86	10.35	0.66	1.57	19.08	13.05	12.56	7.52
Merged-chr6-134070087-3	chr6	134070007	134070207	+	872.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	34407.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.5	9.31	14.26	10.05	12.68	12.86	5.31	18.36	11.41	2.01	15.58	12.53
Merged-chr8-35208570-3	chr8	35208475	35208675	+	872.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167166.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	12.11	6.79	12.55	11.66	9.41	6.9	6.31	22.6	42.68	40.17	82.91	33.83
Merged-chr5-97009235-2	chr5	97009151	97009351	+	872.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	11562.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.63	5.03	1.14	7.64	6.95	9.09	11.29	11.83	13.18	13.05	18.09	9.08
Merged-chr9-120564685-5	chr9	120564550	120564750	+	872.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178676, intron 10 of 10)	B4|SINE|B4	-6867.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	6.06	10.56	5.7	8.45	3.27	9.72	14.62	8.92	11.6	9.04	15.58	13.78
Merged-chr2-80026231-3	chr2	80026103	80026303	+	872.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12699.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	9.29	6.79	5.13	9.65	26.59	15.99	14.62	23.92	28.91	19.08	26.63	10.02
Merged-chr13-54302951-4	chr13	54302791	54302991	+	872.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-68458.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	8.48	10.31	11.98	3.22	12.68	9.41	9.3	4.23	8.06	19.58	15.58	13.16
Merged-chr11-103308094-3	chr11	103307996	103308196	+	872.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	36606.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	20.59	5.79	29.09	8.45	11.05	19.76	12.62	27.11	15.74	16.07	17.08	10.96
Merged-chr1-61690901-1	chr1	61690801	61691001	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 1 of 22)	MIR|SINE|MIR	52077.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.0	0.5	2.28	0.8	16.36	9.72	10.96	13.29	2.36	1.0	1.51	0.31
Merged-chrX-12124769-3	chrX	12124675	12124875	+	872.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	35571.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	11.71	14.09	14.26	4.02	8.18	20.38	9.97	4.49	16.52	9.54	22.11	7.83
Merged-chr6-146221580-1	chr6	146221480	146221680	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280643.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	5.25	5.03	1.71	7.64	4.09	11.6	5.31	9.64	4.92	3.01	5.53	3.13
Merged-chr19-11966493-1	chr19	11966393	11966593	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	649.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.04	5.79	7.42	3.62	6.95	3.14	9.3	6.34	10.82	4.52	5.02	1.57
Merged-chr5-146780189-3	chr5	146780108	146780308	+	872.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	B4A|SINE|B4	14748.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	9.29	4.02	12.55	20.51	11.05	15.05	10.96	21.36	14.75	20.08	23.62	10.34
Merged-chr6-123260433-1	chr6	123260333	123260533	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1674.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	6.46	1.76	1.71	2.01	20.05	11.29	9.3	8.92	4.52	3.01	5.02	1.88
Merged-chr13-33076324-1	chr13	33076224	33076424	+	872.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-7779.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	6.46	3.77	6.85	4.42	2.45	3.76	1.99	2.86	18.29	11.05	20.1	15.98
Merged-chr4-132974109-3	chr4	132974004	132974204	+	872.6166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	9.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	24.23	18.61	26.24	8.85	30.68	17.25	7.64	10.15	18.88	9.54	14.07	7.83
Merged-chr3-22152936-3	chr3	22152848	22153048	+	872.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 2 of 15)	intron (NM_030732, intron 2 of 15)	76296.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	20.59	9.81	21.68	13.27	13.5	10.35	7.97	10.85	14.36	9.54	30.65	5.95
Merged-chr12-32944188-3	chr12	32944101	32944301	+	872.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	9588.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.63	9.56	21.11	4.83	27.0	15.99	15.61	20.97	10.82	13.56	10.55	10.02
Merged-chr2-166688227-3	chr2	166688146	166688346	+	872.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	MTC|LTR|ERVL-MaLR	25586.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.85	10.31	8.56	14.48	6.55	16.31	4.32	7.63	25.57	10.04	17.08	14.72
Merged-chr7-19797412-3	chr7	19797316	19797516	+	872.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-607.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	12.11	10.82	12.55	15.28	15.14	9.41	1.99	9.45	22.42	13.56	16.08	12.22
Merged-chr12-12229747-2	chr12	12229648	12229848	+	872.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-32391.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	13.33	13.08	10.27	16.89	17.18	8.78	4.98	15.62	3.34	0.0	1.51	1.57
Merged-chr19-5882170-3	chr19	5882080	5882280	+	872.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	4358.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	9.29	10.82	14.26	21.72	10.23	21.01	16.94	22.49	18.88	12.55	17.59	5.95
Merged-chr11-70777363-3	chr11	70777262	70777462	+	872.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12915.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	21.4	12.83	14.83	8.85	21.27	13.17	10.3	14.02	23.01	11.05	22.61	10.96
Merged-chr7-118995230-3	chr7	118995137	118995337	+	872.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195774)	promoter-TSS (NM_001195774)	-26.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	15.34	8.8	17.11	2.01	18.41	13.17	5.65	13.26	15.74	7.53	19.09	8.46
Merged-chr3-81058692-3	chr3	81058591	81058791	+	872.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	22275.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	16.96	11.57	7.99	11.26	20.86	18.19	20.26	25.71	20.26	18.58	14.57	10.65
Merged-chr3-152895122-3	chr3	152895031	152895231	+	872.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	87076.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	6.06	7.55	17.11	9.65	14.32	11.29	11.29	12.48	15.93	18.58	20.1	15.66
Merged-chr13-94295103-1	chr13	94295003	94295203	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9272.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	1.21	3.52	3.42	7.64	6.95	10.03	6.98	13.63	6.88	3.51	2.51	5.33
Merged-chr7-33900227-3	chr7	33900116	33900316	+	872.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44769.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	19.38	11.57	35.94	30.57	35.18	23.83	26.91	56.24	8.85	11.55	21.1	7.21
Merged-chr13-119600286-2	chr13	119600148	119600348	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23571.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.04	3.27	5.13	3.62	4.09	0.94	17.94	4.32	2.56	9.54	4.02	10.65
Merged-chr4-117787196-1	chr4	117787096	117787296	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21530.0	NM_029416	75753.0	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	2.83	0.75	0.57	1.21	9.41	12.23	5.98	11.41	5.51	8.03	7.03	2.51
Merged-chr1-88433705-2	chr1	88433618	88433818	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26708.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	5.65	4.28	1.14	9.25	11.05	21.32	7.64	18.25	24.0	11.55	35.68	11.59
Merged-chr5-115493017-2	chr5	115492865	115493065	+	872.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8481.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.02	2.52	1.71	2.82	4.09	3.45	1.33	0.76	3.15	3.51	0.0	5.01
Merged-chr7-80269197-2	chr7	80269135	80269335	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-420.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	6.86	2.26	7.99	3.62	4.09	4.39	4.65	4.29	11.41	4.02	10.55	4.39
Merged-chr8-105637253-1	chr8	105637153	105637353	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	97.0	NR_151743	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	8.88	10.06	2.85	8.85	13.09	8.47	10.63	5.07	10.42	6.03	15.07	15.35
Merged-chr4-46557136-1	chr4	46557036	46557236	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	9304.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.65	5.53	2.85	0.0	7.77	3.76	6.31	8.33	1.97	4.02	3.01	8.14
Merged-chr10-19506168-2	chr10	19506070	19506270	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152784, exon 3 of 4)	non-coding (NR_152784, exon 3 of 4)	11527.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.85	6.04	10.84	7.24	18.82	5.33	6.31	15.67	11.01	6.53	14.57	5.95
Merged-chr8-107505258-1	chr8	107505158	107505358	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 6 of 23)	intron (NM_025830, intron 6 of 23)	-45986.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	11.71	4.02	3.99	2.41	6.95	2.82	7.31	8.5	5.7	9.54	7.54	4.7
Merged-chr1-106030566-3	chr1	106030513	106030713	+	872.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001122676, exon 13 of 14)	exon (NM_001122676, exon 13 of 14)	40207.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	14.94	10.06	3.42	16.89	12.27	12.54	18.27	21.22	7.87	7.03	17.59	7.21
Merged-chr8-70898217-3	chr8	70898117	70898317	+	872.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-774.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	17.36	15.59	7.99	6.44	9.41	11.29	7.64	10.43	15.54	12.55	12.06	6.27
Merged-chr10-127164796-3	chr10	127164693	127164893	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-363.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	12.11	9.06	14.83	12.87	15.96	19.13	11.96	20.86	13.18	14.06	18.59	15.66
Merged-chr3-27453775-3	chr3	27453711	27453911	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 22 of 26)	intron (NM_001356953, intron 22 of 26)	82460.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	24.63	13.33	15.4	10.86	17.18	13.17	17.27	22.85	9.83	15.57	7.54	7.21
Merged-chr17-35824633-3	chr17	35824526	35824726	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008027, exon 5 of 13)	exon (NM_008027, exon 5 of 13)	1269.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	13.73	16.35	5.13	9.25	10.23	18.5	12.29	2.78	13.18	14.06	11.05	7.52
Merged-chrX-61680146-3	chrX	61680059	61680259	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29457.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	10.9	3.27	13.69	11.66	31.91	24.46	36.54	43.93	55.47	41.67	57.79	21.3
Merged-chr8-123043506-3	chr8	123043405	123043605	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	930.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	7.27	5.79	4.56	8.04	13.09	11.29	5.31	6.87	14.16	9.04	6.03	8.77
Merged-chr12-112674569-4	chr12	112674512	112674712	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165894)	promoter-TSS (NM_001165894)	272.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	9.29	3.52	6.85	3.62	7.77	6.27	5.98	4.09	5.9	9.04	7.54	17.86
Merged-chr14-13995649-4	chr14	13995623	13995823	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16768.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	3.63	2.52	10.84	3.62	6.95	3.14	2.66	5.72	7.47	13.05	5.02	5.64
Merged-chr16-5202808-3	chr16	5202718	5202918	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027804, intron 1 of 8)	intron (NR_027804, intron 1 of 8)	1194.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	9.69	21.38	11.98	10.46	16.77	32.61	12.62	11.19	24.39	26.11	33.67	11.9
Merged-chr13-23879819-3	chr13	23879735	23879935	+	872.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121611, intron 8 of 12)	intron (NR_121611, intron 8 of 12)	9562.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	11.71	15.09	7.99	16.89	10.23	18.81	13.95	12.2	14.36	11.55	26.63	8.46
Merged-chr2-113654246-1	chr2	113654146	113654346	+	872.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-30844.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.44	3.02	12.55	6.44	9.41	10.03	18.27	18.06	6.1	6.03	4.52	3.76
Merged-chr14-98873695-1	chr14	98873595	98873795	+	872.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172441.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	7.27	5.03	9.7	5.63	23.73	9.72	7.97	20.66	6.88	3.01	10.05	2.51
Merged-chr8-84701771-2	chr8	84701658	84701858	+	872.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008535, exon 1 of 4)	5' UTR (NM_008535, exon 1 of 4)	301.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	20.19	12.58	10.84	10.46	10.64	16.31	8.64	10.12	15.34	15.06	11.56	8.14
Merged-chr13-9418801-3	chr13	9418705	9418905	+	872.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142280.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	13.33	2.77	12.55	18.9	10.23	13.8	11.63	14.07	19.28	11.55	20.6	10.65
Merged-chr17-37286904-3	chr17	37286807	37287007	+	872.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-6489.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	12.52	24.9	23.39	11.66	7.36	11.6	8.97	7.82	31.08	23.6	41.71	12.53
Merged-chrX-159071886-3	chrX	159071764	159071964	+	872.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-183918.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	11.71	7.29	13.69	7.64	16.36	15.99	10.3	14.66	20.26	15.06	28.14	6.27
Merged-chr11-33148524-3	chr11	33148410	33148610	+	872.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1110.0	NR_102395	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	12.92	20.12	9.13	6.44	15.14	19.13	15.61	19.79	18.88	13.05	14.57	8.46
Merged-chr18-68220095-2	chr18	68219995	68220195	+	872.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	RLTR42-int|LTR|ERVK	-7851.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.08	8.8	1.71	4.02	8.59	11.6	6.31	10.43	10.62	9.54	6.53	9.4
Merged-chr1-186204372-2	chr1	186204287	186204487	+	872.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87077.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	10.9	9.06	28.52	23.33	6.55	6.27	6.98	21.76	0.98	0.0	1.0	1.88
Merged-chr6-30035264-3	chr6	30035181	30035381	+	872.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-12707.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	9.69	13.83	14.26	13.67	13.91	15.99	13.29	18.14	14.16	15.57	28.64	12.84
Merged-chr12-10755213-1	chr12	10755113	10755313	+	872.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-292600.0	NR_045860	71457.0	Mm.95280	NR_045860	ENSMUSG00000113620	7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	1.62	6.79	4.56	4.83	17.59	6.9	8.64	21.53	4.52	8.03	9.04	4.39
Merged-chr8-125053649-3	chr8	125053553	125053753	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-542.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	10.09	3.02	9.7	22.12	13.5	19.76	7.31	15.56	14.55	16.07	17.08	17.54
Merged-chr11-6169431-3	chr11	6169319	6169519	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	3912.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	16.96	15.34	14.26	11.26	9.41	14.11	9.63	21.0	20.26	13.05	9.55	19.11
Merged-chr7-88117231-1	chr7	88117131	88117331	+	872.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-160854.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.04	4.02	7.99	11.66	9.41	10.98	9.97	21.64	6.1	0.5	9.55	9.08
Merged-chr11-29787593-3	chr11	29787484	29787684	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38084.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	12.11	8.05	6.85	8.85	4.91	12.54	9.97	12.59	14.95	7.53	10.55	9.71
Merged-chr10-4126573-3	chr10	4126474	4126674	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	86546.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	7.67	6.29	18.25	18.1	27.0	12.86	11.96	27.31	7.47	18.08	19.09	4.7
Merged-chr10-42118711-3	chr10	42118609	42118809	+	872.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100327.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	14.54	10.31	13.69	12.47	17.59	26.34	16.61	26.78	19.87	11.05	29.14	6.58
Merged-chr14-44105509-3	chr14	44105408	44105608	+	872.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	2621.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	13.33	24.4	19.4	6.84	10.64	30.1	18.6	4.49	23.6	22.59	12.06	5.01
Merged-chr10-40476717-3	chr10	40476622	40476822	+	872.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198164, intron 9 of 11)	intron (NM_198164, intron 9 of 11)	-93640.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	14.54	10.31	19.97	17.29	11.05	5.33	19.27	18.64	13.57	7.03	14.07	10.02
Merged-chr6-94159452-3	chr6	94159327	94159527	+	872.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78015.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	16.96	7.04	10.84	23.73	38.86	81.22	38.2	87.11	16.33	13.05	13.06	7.83
Merged-chr2-130697566-3	chr2	130697356	130697556	+	872.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081162)	promoter-TSS (NM_001081162)	63.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	4.44	8.55	5.7	4.83	3.68	10.35	8.97	10.12	4.92	4.02	10.05	10.34
Merged-chr17-65766105-3	chr17	65766012	65766212	+	872.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6640.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	11.31	12.07	20.54	12.87	12.68	11.92	7.64	6.93	39.73	24.1	32.66	26.31
Merged-chr14-118423553-1	chr14	118423453	118423653	+	872.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	57675.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	5.25	4.02	8.56	11.66	9.82	6.9	4.98	8.47	0.59	5.02	2.01	2.19
Merged-chr6-5292983-1	chr6	5292883	5293083	+	872.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	5390.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	2.83	8.55	5.13	6.44	7.36	14.11	9.63	7.99	6.29	3.01	5.53	2.19
Merged-chr19-5447758-2	chr19	5447758	5447958	+	872.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010235, exon 1 of 4)	5' UTR (NM_010235, exon 1 of 4)	160.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	3.63	6.79	1.71	1.61	4.5	12.54	3.99	3.48	9.64	5.52	5.02	7.83
Merged-chr15-6278747-3	chr15	6278652	6278852	+	872.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21037.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	11.31	8.8	9.13	5.63	17.18	13.8	2.33	9.67	20.65	18.08	9.04	3.13
Merged-chr6-115469464-3	chr6	115469366	115469566	+	872.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47400.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	14.94	11.57	27.95	20.51	17.18	16.31	9.3	16.26	14.75	8.03	13.06	6.58
Merged-chr12-79029165-3	chr12	79029079	79029279	+	872.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	16.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	5.25	8.8	3.42	7.64	10.64	20.07	6.98	12.36	18.49	10.54	19.09	9.4
Merged-chrX-36874896-3	chrX	36874786	36874986	+	872.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019668, intron 2 of 5)	CpG-15640	591.0	NM_019668	22209.0	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	20.19	14.59	9.7	16.89	11.05	13.48	14.62	12.9	28.32	10.54	26.13	9.71
Merged-chr12-52049573-3	chr12	52049458	52049658	+	872.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21495.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	12.52	3.77	12.55	27.35	3.68	10.66	16.61	17.27	11.8	6.03	17.59	8.77
Merged-chr18-13301284-1	chr18	13301184	13301384	+	872.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	294294.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	4.28	6.85	6.03	1.64	3.76	1.33	5.21	41.5	13.56	34.17	27.57
Merged-chr13-92804529-3	chr13	92804418	92804618	+	872.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9700.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	12.92	10.82	21.68	9.25	8.18	18.19	5.31	17.55	35.99	31.63	42.21	27.88
Merged-chr15-98871796-3	chr15	98871702	98871902	+	872.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-597.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	6.86	7.04	6.28	12.87	17.18	11.6	13.95	9.03	23.41	18.58	22.11	10.65
Merged-chr2-75991040-3	chr2	75990918	75991118	+	872.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081033)	TTS (NM_001081033)	-9051.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	8.48	7.29	15.4	6.44	14.73	17.25	10.63	12.53	13.57	12.55	18.09	8.77
Merged-chr1-152430054-2	chr1	152429954	152430154	+	872.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	L1M3|LINE|L1	30187.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	14.54	5.28	5.7	4.83	6.95	14.74	5.98	10.35	15.93	16.07	3.01	13.78
Merged-chr12-30578246-2	chr12	30578138	30578338	+	872.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6205.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	5.65	4.28	2.28	10.05	4.5	5.96	8.64	11.61	13.77	14.06	19.09	5.95
Merged-chr5-96919165-3	chr5	96919090	96919290	+	872.14447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2082.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	12.11	16.35	17.68	12.07	10.64	9.09	6.98	15.67	18.1	7.03	18.09	13.16
Merged-chr14-75829058-3	chr14	75828947	75829147	+	872.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15917.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	11.31	8.3	9.13	4.42	6.55	11.29	14.95	11.92	14.75	8.54	11.05	8.14
Merged-chr9-20966976-3	chr9	20966855	20967055	+	872.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010333, exon 2 of 2)	3' UTR (NM_010333, exon 2 of 2)	-7067.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	5.65	9.56	3.42	14.48	10.64	10.66	3.65	10.37	11.41	20.08	19.6	9.4
Merged-chr11-115535656-3	chr11	115535542	115535742	+	872.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133354, intron 1 of 3)	CpG	588.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	16.96	28.42	10.84	16.09	11.45	22.58	17.61	7.6	22.42	25.11	12.56	12.22
Merged-chr6-53460149-3	chr6	53460060	53460260	+	872.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-113214.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	9.29	5.03	8.56	13.67	3.68	16.62	14.95	11.52	13.37	6.03	16.08	13.16
Merged-chr9-123985086-2	chr9	123984980	123985180	+	872.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-6672.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	15.75	8.3	27.38	17.29	17.59	14.74	13.62	21.34	10.42	5.52	6.03	16.6
Merged-chr3-115818894-3	chr3	115818795	115818995	+	872.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69164.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	10.5	9.56	10.27	20.11	26.59	21.01	11.96	30.25	24.39	15.06	38.19	15.04
Merged-chr7-123207659-2	chr7	123207547	123207747	+	872.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7219.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	2.42	1.01	1.14	1.61	9.41	11.92	4.32	11.72	10.23	4.52	18.09	15.98
Merged-chr2-141030872-3	chr2	141030763	141030963	+	872.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-359387.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.42	14.34	16.54	9.65	5.73	8.47	18.6	10.99	15.14	7.03	21.1	20.68
Merged-chr7-110266029-3	chr7	110265926	110266126	+	872.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 5 of 11)	intron (NM_009302, intron 5 of 11)	44323.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	18.17	7.29	11.98	6.84	20.86	20.7	3.65	11.5	28.52	18.58	9.55	20.36
Merged-chr12-111676894-2	chr12	111676808	111677008	+	872.0499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1197.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.44	4.28	5.7	4.02	13.91	9.09	7.31	14.33	11.01	10.04	13.06	15.04
Merged-chr8-13156073-1	chr8	13155973	13156173	+	872.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3088.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.23	6.04	17.11	6.44	9.0	4.08	1.66	2.16	12.59	12.55	1.0	5.01
Merged-chr6-134087843-2	chr6	134087733	134087933	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	52133.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.09	11.57	20.54	13.27	11.45	7.21	19.27	16.29	3.34	0.0	2.01	4.39
Merged-chr17-25136599-1	chr17	25136499	25136699	+	872.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-32.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.0	0.75	2.85	0.0	4.5	0.31	2.66	2.75	27.93	16.07	21.61	8.77
Merged-chr18-54639858-1	chr18	54639758	54639958	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045400)	TTS (NR_045400)	28114.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	5.25	4.02	6.28	10.86	11.86	11.29	11.96	12.59	4.33	4.52	11.05	7.83
Merged-chr11-5734550-3	chr11	5734453	5734653	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6623.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	13.73	14.09	9.7	8.04	12.68	23.2	6.31	10.68	21.83	19.08	23.62	14.41
Merged-chr6-31373255-3	chr6	31373158	31373358	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	25515.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	14.54	4.78	14.26	16.49	13.5	11.92	15.94	21.7	19.08	10.54	14.07	15.35
Merged-chr12-55303280-3	chr12	55303177	55303377	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021529)	promoter-TSS (NM_021529)	-277.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	9.29	11.07	8.56	12.47	8.59	11.29	13.62	11.3	18.1	33.64	28.14	11.9
Merged-chr3-9619723-1	chr3	9619623	9619823	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9638.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.85	4.02	5.7	9.65	4.5	13.17	7.64	16.96	7.08	1.51	11.56	2.51
Merged-chr10-41972967-1	chr10	41972867	41973067	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 7 of 17)	intron (NM_001034858, intron 7 of 17)	45415.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	2.02	1.51	2.28	3.22	3.68	2.51	6.98	6.14	4.92	7.03	3.01	1.57
Merged-chr1-131549201-1	chr1	131549101	131549301	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21298.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	3.23	9.06	2.85	2.01	12.27	13.8	5.65	6.93	10.23	0.0	7.03	3.76
Merged-chr16-44794592-1	chr16	44794492	44794692	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021325, exon 7 of 7)	3' UTR (NM_021325, exon 7 of 7)	-26136.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.81	0.5	6.85	3.22	16.36	10.03	2.66	8.07	6.88	9.04	5.53	2.51
Merged-chr9-96612108-1	chr9	96612008	96612208	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053268, intron 1 of 23)	L2|LINE|L2	19395.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	7.67	1.76	8.56	5.23	2.05	1.57	8.3	10.54	3.74	4.02	5.53	4.7
Merged-chr4-119105893-3	chr4	119105798	119105998	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2847.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	10.5	4.28	18.25	9.25	23.32	14.42	14.95	12.0	20.65	20.08	29.65	13.16
Merged-chr6-34716690-1	chr6	34716590	34716790	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145575, intron 1 of 11)	intron (NM_145575, intron 1 of 11)	7246.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.83	0.5	4.56	0.8	6.14	10.03	2.66	9.45	6.88	1.0	9.04	7.83
Merged-chr14-40928785-1	chr14	40928685	40928885	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	19424.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.25	0.75	10.27	1.21	9.82	1.25	4.98	8.97	5.51	9.54	9.04	2.51
Merged-chr1-177986897-2	chr1	177986803	177987003	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4495.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	8.48	8.05	1.71	5.23	11.45	11.29	13.29	12.45	13.57	12.05	16.08	15.04
Merged-chr2-35289167-1	chr2	35289067	35289267	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206368, intron 3 of 16)	intron (NM_001206368, intron 3 of 16)	6787.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	6.46	8.3	0.0	1.61	4.91	10.03	4.65	7.01	6.49	12.05	6.03	6.27
Merged-chr2-125667289-1	chr2	125667189	125667389	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 5 of 11)	intron (NM_199022, intron 5 of 11)	-5811.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	2.42	4.53	2.85	5.63	10.64	10.03	9.3	16.57	4.52	8.54	16.58	4.7
Merged-chr14-20307829-1	chr14	20307729	20307929	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153364, intron 7 of 9)	intron (NR_153364, intron 7 of 9)	13139.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	1.62	0.75	1.14	4.83	2.86	4.08	6.98	8.66	9.05	4.52	8.54	3.45
Merged-chrX-140508071-1	chrX	140507971	140508171	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	34597.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	4.85	3.27	0.0	4.42	9.0	1.25	3.32	5.61	1.97	1.51	12.56	1.25
Merged-chr10-67127176-3	chr10	67127071	67127271	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-87.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	16.96	11.57	3.99	13.27	17.59	8.15	23.92	9.76	11.01	12.55	16.58	8.14
Merged-chr15-97351338-1	chr15	97351238	97351438	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-104051.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.85	3.77	2.85	2.82	13.09	8.47	12.62	16.04	3.34	7.03	15.07	3.13
Merged-chr7-128412255-2	chr7	128412126	128412326	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	5946.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	12.92	10.56	6.85	5.23	4.09	6.9	3.99	5.19	2.56	7.53	3.52	2.82
Merged-chr14-87452249-1	chr14	87452149	87452349	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	35666.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	6.06	3.52	3.42	3.62	11.05	9.41	4.98	11.36	8.65	2.01	2.01	1.88
Merged-chr10-125314288-3	chr10	125314195	125314395	+	871.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-5479.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.04	12.32	13.12	26.14	20.86	8.47	26.57	29.61	9.24	14.06	16.08	10.34
Merged-chr1-151616725-2	chr1	151616643	151616843	+	871.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	RMER19B|LTR|ERVK	45370.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.65	4.28	3.42	1.61	17.18	12.23	5.65	9.53	14.55	17.57	17.59	5.95
Merged-chr7-63916559-3	chr7	63916458	63916658	+	871.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256311)	promoter-TSS (NM_001256311)	-299.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	9.29	10.82	18.25	2.41	20.86	15.05	13.62	12.42	18.69	26.11	13.57	9.4
Merged-chr11-116617856-3	chr11	116617731	116617931	+	871.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6421.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	21.0	18.86	10.84	5.63	17.59	19.76	22.26	12.17	25.96	13.56	12.06	11.28
Merged-chr7-36697975-2	chr7	36697874	36698074	+	871.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-144.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.63	0.0	2.85	3.22	6.95	9.41	11.29	4.79	17.31	24.1	20.6	9.4
Merged-chr6-76513202-3	chr6	76513101	76513301	+	871.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-729276.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	14.13	10.06	21.68	31.37	25.36	35.75	36.87	62.83	15.54	13.56	11.05	13.47
Merged-chr15-73421510-3	chr15	73421423	73421623	+	871.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1668.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	16.56	6.29	12.55	7.64	18.41	12.23	12.29	16.23	15.74	15.06	17.59	12.53
Merged-chr11-117780172-1	chr11	117780072	117780272	+	871.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	520.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	14.94	6.29	14.26	12.07	22.09	16.31	20.26	11.61	22.23	14.56	25.63	9.08
Merged-chr7-31155749-5	chr7	31155632	31155832	+	871.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4561.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	3.23	7.29	5.13	8.04	8.18	5.96	13.62	6.25	8.46	9.54	16.58	6.58
Merged-chr9-57888223-3	chr9	57888119	57888319	+	871.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-22767.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	15.75	11.57	21.11	14.08	26.59	18.5	10.63	11.97	23.21	17.07	24.62	13.78
Merged-chr6-145765166-3	chr6	145765047	145765247	+	871.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43236.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	6.06	7.55	23.39	14.08	7.36	11.92	30.23	61.6	14.55	6.53	21.1	17.86
Merged-chr6-16896615-3	chr6	16896495	16896695	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	Lx3C|LINE|L1	1846.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	15.34	6.79	3.99	10.46	21.68	17.56	6.64	11.16	19.08	26.11	22.11	8.14
Merged-chr10-94312181-2	chr10	94312035	94312235	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001359762, exon 1 of 5)	5' UTR (NM_001359762, exon 1 of 5)	186.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.25	6.79	2.85	7.64	4.5	11.29	5.65	8.21	7.08	2.01	3.52	8.77
Merged-chr11-5502567-3	chr11	5502458	5502658	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-18083.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	8.08	5.28	12.55	12.87	24.96	23.2	16.94	32.64	17.51	15.57	26.63	16.6
Merged-chrX-74249882-3	chrX	74249786	74249986	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-3352.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	4.85	14.09	19.97	12.47	8.18	5.33	5.31	5.64	12.39	21.09	38.19	21.93
Merged-chr3-126611056-2	chr3	126610960	126611160	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14109.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	22.61	11.32	10.84	6.84	26.59	32.93	19.93	23.24	6.88	2.51	3.52	3.45
Merged-chr9-31446123-2	chr9	31446017	31446217	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144936, intron 1 of 5)	intron (NM_144936, intron 1 of 5)	18121.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	5.65	1.01	16.54	14.08	10.64	14.11	15.94	36.17	2.75	4.02	5.53	2.51
Merged-chr1-71811456-3	chr1	71811372	71811572	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76640.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	39.98	28.17	29.09	35.8	17.59	6.59	17.27	14.58	12.98	13.56	8.54	9.71
Merged-chr15-103515234-3	chr15	103515146	103515346	+	871.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001285890, exon 1 of 15)	5' UTR (NM_001285890, exon 1 of 15)	269.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	7.67	11.82	19.97	12.47	9.41	14.42	10.63	15.64	18.49	14.06	28.64	10.65
Merged-chr9-96636648-3	chr9	96636513	96636713	+	871.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5110.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	5.25	9.06	10.27	9.65	15.55	10.66	13.95	8.61	12.39	16.57	14.57	13.78
Merged-chr14-33057749-3	chr14	33057664	33057864	+	871.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146022, intron 36 of 58)	intron (NM_001146022, intron 36 of 58)	66382.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	17.36	8.05	14.26	12.87	14.32	20.07	25.58	24.08	13.77	7.53	24.62	8.77
Merged-chr4-134734550-4	chr4	134734515	134734715	+	871.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30325.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	13.33	10.56	9.7	7.64	13.09	12.86	7.64	13.91	12.0	11.55	16.08	11.59
Merged-chr5-23712613-4	chr5	23712494	23712694	+	871.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038090)	promoter-TSS (NR_038090)	73.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	15.75	9.31	3.42	6.44	31.09	56.13	27.9	35.83	11.6	14.56	17.08	5.95
Merged-chr12-4195438-3	chr12	4195356	4195556	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 6 of 21)	intron (NM_001159537, intron 6 of 21)	38509.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	21.4	8.05	6.28	22.93	26.59	12.54	15.28	17.78	11.8	10.04	13.57	6.58
Merged-chr6-125353028-3	chr6	125352936	125353136	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	3313.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	6.46	4.28	15.4	17.29	12.68	13.17	16.28	26.02	15.54	11.05	25.12	12.22
Merged-chr12-69332286-3	chr12	69332159	69332359	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025441, intron 16 of 32)	PB1D9|SINE|Alu	24917.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	11.31	8.3	10.27	7.24	14.32	13.8	13.29	15.11	12.78	8.03	11.56	14.1
Merged-chr7-48750588-3	chr7	48750473	48750673	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38430.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	10.9	25.15	6.85	9.65	13.5	19.76	23.25	24.28	28.52	14.06	34.67	15.98
Merged-chr5-140722376-1	chr5	140722276	140722476	+	871.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1751.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.81	3.02	3.42	8.04	11.45	14.74	16.94	15.17	6.29	6.03	8.54	9.08
Merged-chr3-126624362-3	chr3	126624274	126624474	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	27423.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.23	11.57	14.83	2.41	4.09	8.47	3.65	6.14	17.11	3.51	13.57	5.33
Merged-chr2-102741855-3	chr2	102741760	102741960	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 4 of 10)	intron (NM_001077514, intron 4 of 10)	4900.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	14.13	14.59	11.41	7.64	18.82	21.01	12.29	9.48	9.05	14.06	23.11	3.76
Merged-chrX-163867918-3	chrX	163867826	163868026	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41091.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	7.67	6.04	16.54	10.05	12.68	12.23	17.94	31.46	17.51	10.54	16.08	12.53
Merged-chr9-7577548-2	chr9	7577442	7577642	+	871.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310717, intron 5 of 9)	intron (NM_001310717, intron 5 of 9)	6146.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	2.83	3.02	8.56	4.02	12.27	6.9	6.64	10.71	15.93	5.52	12.06	16.29
Merged-chr13-119358901-2	chr13	119358803	119359003	+	871.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308506, intron 12 of 16)	MTD|LTR|ERVL-MaLR	50108.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	7.67	3.27	9.7	3.22	1.64	2.51	7.64	10.96	12.19	6.03	13.57	10.96
Merged-chr15-100613803-3	chr15	100613694	100613894	+	871.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045701)	TTS (NR_045701)	1316.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	24.63	8.05	7.99	7.64	21.68	14.42	9.3	9.53	21.05	28.12	16.58	11.59
Merged-chr5-108447186-3	chr5	108447096	108447296	+	871.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1904.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	11.71	13.08	10.84	1.61	11.05	67.73	16.94	9.25	21.64	20.59	18.59	3.45
Merged-chr10-18887118-3	chr10	18887019	18887219	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42048.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	16.96	10.06	18.83	28.15	18.82	20.07	17.27	40.91	15.54	17.57	10.55	19.42
Merged-chr2-18655025-3	chr2	18654939	18655139	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17423.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	20.19	31.44	37.65	11.26	9.41	15.37	12.29	14.41	17.7	6.03	16.58	9.71
Merged-chr10-116505509-3	chr10	116505413	116505613	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359253, intron 2 of 11)	intron (NM_001359253, intron 2 of 11)	22436.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	11.71	8.05	15.97	8.04	18.82	19.76	15.61	24.93	19.47	18.58	28.14	16.29
Merged-chr8-46740453-6	chr8	46740391	46740591	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045750)	promoter-TSS (NR_045750)	746.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.25	5.79	5.13	4.42	5.32	3.76	7.64	5.41	11.21	13.05	6.03	11.9
Merged-chr16-5145753-3	chr16	5145667	5145867	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	18.98	13.58	12.55	4.83	4.09	16.31	1.33	11.78	14.75	10.04	18.09	11.59
Merged-chr10-128525310-3	chr10	128525220	128525420	+	871.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011843, intron 1 of 30)	CpG	539.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	18.57	11.82	12.55	9.25	20.05	11.6	5.31	10.85	8.65	11.05	20.1	7.21
Merged-chr1-170582548-2	chr1	170582437	170582637	+	871.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	MTE2b|LTR|ERVL-MaLR	7312.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	1.62	0.25	2.28	0.8	13.5	16.93	7.97	26.24	24.19	14.56	26.13	15.98
Merged-chr7-46788530-3	chr7	46788438	46788638	+	871.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005247, intron 4 of 22)	intron (NM_001005247, intron 4 of 22)	7343.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	7.27	7.55	13.69	16.89	8.18	7.84	3.65	15.14	17.9	3.51	10.55	10.96
Merged-chr15-99381304-3	chr15	99381198	99381398	+	871.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10816.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	14.94	15.85	15.97	10.05	9.41	18.81	12.62	7.12	27.14	33.64	23.11	11.9
Merged-chr9-103092415-3	chr9	103092313	103092513	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19661.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	8.08	12.32	17.68	10.46	15.55	13.17	9.3	5.33	22.62	19.08	25.63	19.74
Merged-chr1-9773360-2	chr1	9773287	9773487	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24743.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	5.25	4.28	14.26	9.25	4.09	5.64	6.98	9.95	7.67	8.54	6.53	4.07
Merged-chr2-167948132-1	chr2	167948032	167948232	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15805.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.23	4.02	0.57	5.63	5.73	7.21	5.98	11.8	5.9	4.02	3.52	4.07
Merged-chr1-193649574-1	chr1	193649474	193649674	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-142044.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	9.82	0.63	5.98	10.04	0.2	1.51	3.01	0.31
Merged-chr1-106678400-3	chr1	106678272	106678472	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	L1MB3|LINE|L1	35918.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	6.46	7.29	10.27	16.49	17.59	23.83	29.56	42.84	22.03	9.04	19.09	12.22
Merged-chr14-120478982-2	chr14	120478832	120479032	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029519, exon 1 of 2)	exon (NM_029519, exon 1 of 2)	471.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	7.27	9.31	3.99	7.24	10.23	11.92	14.28	10.29	10.23	17.07	12.56	15.98
Merged-chr3-123798037-1	chr3	123797937	123798137	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107185.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	2.02	2.01	1.14	6.84	7.77	3.14	6.31	8.3	0.79	1.0	0.0	0.63
Merged-chr8-33661330-1	chr8	33661230	33661430	+	871.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	RLTR21|LTR|ERVK	8092.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.0	2.01	2.28	0.8	1.23	2.51	0.66	0.34	12.59	16.07	11.05	5.95
Merged-chr1-85989215-3	chr1	85989061	85989261	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	2.83	5.03	6.85	2.82	9.41	3.14	4.32	0.28	11.01	12.55	16.58	4.07
Merged-chr3-146630622-1	chr3	146630522	146630722	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009474, exon 8 of 8)	3' UTR (NM_009474, exon 8 of 8)	-11310.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	3.23	0.75	0.57	0.0	12.68	6.59	7.64	12.06	1.57	5.02	3.52	2.82
Merged-chr2-45105950-3	chr2	45105821	45106021	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	4356.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	1.62	3.52	4.56	0.8	6.14	10.66	8.97	1.88	7.67	5.02	8.04	3.45
Merged-chr13-44484112-3	chr13	44483991	44484191	+	871.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	44364.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	15.75	6.54	10.27	11.26	7.36	15.05	10.3	7.43	12.98	20.59	9.04	20.05
Merged-chr17-47784605-2	chr17	47784482	47784682	+	871.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-1162.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.85	7.29	10.27	5.63	15.96	14.11	10.63	17.75	10.62	22.09	22.61	8.14
Merged-chr8-84011450-3	chr8	84011413	84011613	+	871.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035431)	TTS (NR_035431)	120.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	22.61	14.84	6.85	9.25	10.23	12.54	4.32	11.44	8.46	11.55	16.58	6.27
Merged-chr6-71458183-3	chr6	71458088	71458288	+	871.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17551.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.25	7.04	9.7	12.87	20.05	26.97	27.57	24.98	24.39	27.11	26.63	19.74
Merged-chr15-95791733-3	chr15	95791681	95791881	+	871.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	938.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	9.29	8.8	11.41	5.63	9.0	19.13	5.65	6.22	16.92	17.07	14.07	8.46
Merged-chr6-120191110-1	chr6	120191010	120191210	+	871.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-2713.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.63	5.03	7.42	6.03	11.86	6.9	10.63	16.23	3.15	9.04	10.05	4.7
Merged-chr13-112810490-1	chr13	112810390	112810590	+	871.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008903, intron 1 of 5)	MIR|SINE|MIR	9713.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.62	2.26	4.56	0.8	7.77	5.96	9.3	3.53	20.85	14.06	27.13	20.99
Merged-chr7-25790801-3	chr7	25790710	25790910	+	871.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2077.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	9.69	12.58	14.83	11.26	10.23	21.95	17.27	21.5	19.28	8.54	20.1	6.89
Merged-chr18-36699734-3	chr18	36699646	36699846	+	871.377808	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3821.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	10.5	8.8	23.96	19.71	40.5	12.86	32.88	43.91	23.8	10.04	33.67	26.0
Merged-chr15-25524355-2	chr15	25524263	25524463	+	871.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98187.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	14.54	6.54	19.4	12.87	10.23	7.53	1.33	10.32	9.24	9.04	4.02	10.65
Merged-chr12-75413093-2	chr12	75412996	75413196	+	871.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175644, intron 2 of 2)	L2a|LINE|L2	3685.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	5.65	7.29	1.71	8.85	11.45	5.33	2.33	10.71	9.24	24.1	19.09	19.42
Merged-chr8-46876131-2	chr8	46876034	46876234	+	871.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110753.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.27	5.79	6.28	6.03	13.09	18.5	10.3	15.2	15.34	11.05	14.57	5.33
Merged-chr8-46770084-3	chr8	46769990	46770190	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	30345.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	11.71	12.07	14.83	22.93	18.0	9.41	9.63	19.85	14.75	8.54	23.62	6.58
Merged-chrX-48452396-3	chrX	48452277	48452477	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	10755.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	4.44	10.31	13.12	10.46	13.09	25.4	11.63	8.05	5.31	5.52	11.56	5.33
Merged-chr16-44993541-3	chr16	44993451	44993651	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49873.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	8.88	12.32	24.53	34.19	15.14	10.98	18.6	29.97	12.59	17.57	33.67	7.83
Merged-chr6-34216983-3	chr6	34216858	34217058	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39904.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	3.23	5.28	5.7	7.64	9.0	11.29	10.63	15.03	12.39	9.04	12.06	15.04
Merged-chr13-9330843-1	chr13	9330743	9330943	+	871.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	54318.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.65	3.77	0.57	10.05	10.64	8.78	3.99	11.5	7.08	8.03	5.02	7.83
Merged-chr2-71042078-3	chr2	71041973	71042173	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	Lx8|LINE|L1	13533.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	8.88	8.55	9.13	11.26	45.82	28.22	13.29	40.4	32.45	23.1	26.63	21.3
Merged-chr16-44778034-1	chr16	44777934	44778134	+	871.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	12298.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.85	5.03	7.99	5.63	11.05	13.48	3.32	6.9	8.06	8.54	7.03	3.76
Merged-chr5-113703549-1	chr5	113703449	113703649	+	871.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033216, intron 2 of 2)	intron (NR_033216, intron 2 of 2)	21223.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	3.63	6.04	9.7	9.65	7.36	7.53	9.97	9.36	5.31	2.01	10.05	8.14
Merged-chr6-108341308-2	chr6	108341216	108341416	+	871.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	128220.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	10.9	7.04	16.54	12.87	15.96	12.86	13.29	18.17	1.18	2.51	1.0	3.13
Merged-chr19-55740651-3	chr19	55740560	55740760	+	871.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1150.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	14.13	10.82	15.4	6.03	10.64	15.68	2.99	13.49	14.55	24.6	9.04	8.14
Merged-chr7-67759871-3	chr7	67759761	67759961	+	871.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201639)	promoter-TSS (NM_201639)	-119.0	NM_207663	233335.0	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	12.52	10.31	9.13	12.87	13.5	10.98	23.58	28.99	27.73	5.52	14.57	10.02
Merged-chr5-147532115-3	chr5	147532006	147532206	+	871.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 13 of 18)	intron (NM_028291, intron 13 of 18)	101950.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	2.02	4.53	16.54	16.09	10.64	8.47	24.25	38.89	3.15	6.53	19.6	9.08
Merged-chrX-12088642-5	chrX	12088526	12088726	+	871.253357	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-8073.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	12.92	16.6	7.99	18.5	15.14	15.99	17.27	13.35	11.21	7.03	12.06	6.58
Merged-chr1-45882479-1	chr1	45882379	45882579	+	871.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43115.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.65	3.27	10.27	0.0	6.95	12.54	11.29	14.78	9.05	3.51	4.02	3.76
Merged-chr16-35734225-2	chr16	35734128	35734328	+	871.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 3 of 8)	intron (NM_153550, intron 3 of 8)	35128.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.25	3.52	13.69	1.61	8.18	5.64	4.32	13.29	15.74	7.53	16.58	2.82
Merged-chr8-35709812-1	chr8	35709712	35709912	+	871.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116747.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.0	1.51	0.0	1.21	0.0	1.88	1.33	0.0	9.44	13.05	28.14	16.6
Merged-chr1-190826660-3	chr1	190826571	190826771	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178775, intron 8 of 14)	L1MDa|LINE|L1	85099.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.25	11.07	47.35	24.13	12.68	6.27	10.96	24.87	12.0	3.51	29.65	11.9
Merged-chr12-85465109-3	chr12	85465024	85465224	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8766.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	12.92	8.3	11.41	15.69	24.96	7.53	4.98	18.95	15.34	11.55	15.58	12.84
Merged-chr5-130170771-3	chr5	130170679	130170879	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1040.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	12.92	9.56	6.28	8.85	11.45	9.72	6.64	15.62	18.29	14.56	15.58	14.1
Merged-chr12-102381812-3	chr12	102381683	102381883	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	MER63A|DNA|hAT-Blackjack	58030.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.27	8.05	17.11	13.67	13.09	15.37	16.28	14.5	16.72	16.57	15.07	8.77
Merged-chr13-111789696-4	chr13	111789553	111789753	+	871.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	19340.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.27	11.07	12.55	10.46	10.64	10.98	11.29	11.64	11.21	12.55	11.56	4.7
Merged-chr4-139230964-3	chr4	139230863	139231063	+	871.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	36852.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	16.15	19.37	15.97	18.5	11.45	7.84	3.99	8.69	9.24	21.09	12.06	12.84
Merged-chr11-113339983-1	chr11	113339883	113340083	+	871.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-130314.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	5.25	1.01	3.42	2.41	8.18	9.09	11.96	7.99	2.16	3.51	9.04	2.82
Merged-chr6-108426929-3	chr6	108426819	108427019	+	871.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-62824.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	16.56	6.54	19.4	12.87	17.59	17.25	9.3	21.42	18.49	10.04	15.07	15.66
Merged-chr17-73944943-3	chr17	73944846	73945046	+	871.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5250.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	16.15	6.04	7.99	12.87	22.09	12.86	27.24	35.41	18.29	8.54	24.12	22.56
Merged-chr8-122145083-2	chr8	122144975	122145175	+	871.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137066.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	9.29	10.31	10.84	6.03	5.73	15.37	15.28	13.93	1.97	0.0	4.02	0.63
Merged-chr2-78869716-2	chr2	78869626	78869826	+	871.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151458)	promoter-TSS (NR_151458)	48.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	10.9	11.07	1.14	9.65	4.09	10.66	6.64	6.42	13.96	18.08	8.04	9.4
Merged-chr1-144247668-3	chr1	144247550	144247750	+	871.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1454.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	10.9	11.07	16.54	8.45	16.36	15.37	10.3	12.7	20.06	19.58	10.55	11.59
Merged-chr8-84186712-3	chr8	84186638	84186838	+	871.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7777.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	11.31	10.31	13.12	13.27	9.41	15.99	7.64	8.19	13.18	12.05	10.05	8.77
Merged-chr13-112667341-3	chr13	112667245	112667445	+	871.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6579.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	12.92	14.84	20.54	14.88	10.64	7.53	3.65	12.48	17.9	10.04	17.08	11.28
Merged-chr4-135018239-3	chr4	135018133	135018333	+	871.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87253.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	15.34	13.83	15.97	6.84	12.27	16.62	16.94	10.6	13.57	17.07	11.56	10.96
Merged-chr2-68381332-3	chr2	68381234	68381434	+	871.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90647.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	15.34	10.56	14.83	13.27	12.68	7.84	15.94	19.04	15.14	5.52	13.06	12.53
Merged-chr1-180429983-2	chr1	180429896	180430096	+	871.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	53508.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	7.27	5.53	1.71	6.44	9.41	11.6	5.31	10.21	8.26	7.03	15.07	17.23
Merged-chr4-36183932-2	chr4	36183841	36184041	+	871.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338737.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	2.02	2.52	0.0	3.22	16.77	17.56	16.61	28.23	12.19	14.06	19.6	11.9
Merged-chr12-111016990-3	chr12	111016873	111017073	+	871.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22575.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	16.96	15.09	21.11	12.47	25.77	17.87	3.99	8.44	16.13	22.09	13.57	14.72
Merged-chr1-191178899-3	chr1	191178793	191178993	+	871.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	4440.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	14.13	16.35	11.98	11.66	13.5	19.44	5.98	12.64	11.21	14.56	10.05	4.7
Merged-chr2-129297801-3	chr2	129297680	129297880	+	871.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181589)	promoter-TSS (NM_181589)	410.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	30.28	48.8	19.97	10.46	16.77	44.53	9.3	7.57	44.06	40.67	25.12	22.56
Merged-chr2-158413463-3	chr2	158413351	158413551	+	871.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	3598.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	15.75	11.07	20.54	7.24	9.82	13.48	6.98	16.54	9.83	14.06	17.08	17.86
Merged-chr2-59645446-2	chr2	59645357	59645557	+	871.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1312.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	5.65	3.52	1.14	8.45	10.64	8.15	13.29	9.59	19.28	13.56	11.56	11.28
Merged-chr9-50761714-3	chr9	50761619	50761819	+	871.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311073, exon 4 of 4)	3' UTR (NM_001311073, exon 4 of 4)	4214.0	NM_001311073	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	15.34	10.56	7.42	12.87	9.82	5.33	6.98	9.36	14.75	7.53	8.54	12.22
Merged-chr3-121891738-1	chr3	121891638	121891838	+	871.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61491.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	6.46	3.27	4.56	7.64	3.68	4.39	1.33	3.64	12.98	2.01	8.54	9.4
Merged-chr4-151071087-1	chr4	151070987	151071187	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-13134.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	3.23	1.51	1.71	4.42	8.59	10.66	7.31	8.5	2.16	4.52	1.0	2.19
Merged-chr15-89211706-2	chr15	89211609	89211809	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_027805, exon 1 of 8)	5' UTR (NM_027805, exon 1 of 8)	150.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	17.36	13.83	14.26	10.86	12.68	13.8	12.29	14.97	19.28	14.06	14.07	10.34
Merged-chr8-123064940-1	chr8	123064840	123065040	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-568.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	8.48	7.04	3.42	1.61	6.14	5.64	1.99	2.66	7.87	6.03	3.52	2.19
Merged-chr5-53937364-1	chr5	53937264	53937464	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-61159.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.44	1.76	4.56	4.42	7.36	10.35	7.97	15.36	2.56	8.03	2.01	4.7
Merged-chr8-60804947-1	chr8	60804847	60805047	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85446.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	2.02	4.78	4.56	8.04	1.64	7.21	1.66	9.03	6.1	1.0	3.52	5.01
Merged-chrX-71811737-2	chrX	71811637	71811837	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-4343.0	NM_001290781	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	1.21	4.53	3.42	2.01	2.05	4.7	5.31	6.22	11.01	7.03	13.06	4.39
Merged-chr12-103544313-1	chr12	103544213	103544413	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028980, intron 2 of 24)	intron (NM_028980, intron 2 of 24)	11748.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	4.04	2.01	4.56	1.61	0.82	2.82	9.63	7.04	7.67	3.51	6.03	1.57
Merged-chr4-34642618-2	chr4	34642524	34642724	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151507, intron 8 of 19)	MTE2b|LTR|ERVL-MaLR	27667.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	2.83	1.76	7.99	8.04	14.32	6.59	2.66	14.44	10.03	10.54	9.55	5.33
Merged-chr18-69666379-2	chr18	69666276	69666476	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-259183.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	3.27	10.27	8.04	8.18	4.08	3.65	15.17	12.59	16.57	18.59	5.01
Merged-chr1-105664579-1	chr1	105664479	105664679	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013784)	promoter-TSS (NM_013784)	718.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	8.08	3.77	9.13	2.41	4.5	2.2	6.98	8.07	3.74	3.51	3.01	5.95
Merged-chr10-44029736-1	chr10	44029636	44029836	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24890.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	3.63	4.53	2.28	14.48	2.05	8.78	3.99	8.47	2.95	1.51	15.58	3.45
Merged-chr1-183296632-1	chr1	183296532	183296732	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181732)	promoter-TSS (NM_181732)	-428.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	9.29	11.07	8.56	9.25	10.23	11.6	19.27	9.9	9.24	15.57	11.56	8.46
Merged-chr1-184675919-3	chr1	184675808	184676008	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36589.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	5.65	8.8	3.42	7.64	24.14	30.42	17.27	35.3	19.28	26.61	20.1	23.81
Merged-chr4-5644562-1	chr4	5644462	5644662	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	CpG	472.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	8.08	6.29	0.57	6.84	4.5	8.47	17.61	8.16	9.05	10.54	7.03	4.39
Merged-chr14-33101817-2	chr14	33101722	33101922	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 20 of 58)	intron (NM_001146022, intron 20 of 58)	83244.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	11.71	5.53	22.82	9.65	4.5	3.14	5.98	17.27	4.13	4.52	10.05	2.51
Merged-chrX-105120399-1	chrX	105120299	105120499	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053201)	promoter-TSS (NM_053201)	21.0	NM_053201	107528.0	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	3.23	5.28	0.0	4.83	4.09	1.88	4.98	11.72	4.92	1.51	7.54	2.19
Merged-chr2-30772114-3	chr2	30772035	30772235	+	870.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29602.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	13.33	14.59	11.98	14.48	17.59	10.35	8.64	12.76	14.16	18.58	13.57	12.53
Merged-chr16-76768758-3	chr16	76768666	76768866	+	870.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	10326.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	13.33	9.56	8.56	16.89	8.59	11.92	16.61	19.51	15.14	20.08	25.12	13.78
Merged-chr10-96706870-3	chr10	96706785	96706985	+	870.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89884.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	10.9	13.08	7.99	13.27	6.55	8.78	11.63	20.38	19.67	23.6	23.11	11.9
Merged-chr3-144569639-2	chr3	144569532	144569732	+	870.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	584.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	13.73	14.84	6.85	16.89	7.36	11.6	12.29	15.11	12.39	4.52	5.02	12.53
Merged-chr11-23821139-3	chr11	23821057	23821257	+	870.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50187.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	11.71	8.8	25.1	7.64	19.64	18.19	11.63	20.78	12.19	10.04	23.62	5.33
Merged-chr18-39319868-3	chr18	39319762	39319962	+	870.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167383.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	10.09	9.06	7.99	11.66	13.5	8.78	8.64	12.45	20.26	23.1	35.17	17.54
Merged-chr10-27369968-2	chr10	27369862	27370062	+	870.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 4 of 63)	Lx8b|LINE|L1	-19904.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	14.54	13.33	24.53	16.09	14.73	8.47	6.98	20.36	0.59	0.0	0.0	0.63
Merged-chr16-24826567-3	chr16	24826453	24826653	+	870.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	104698.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	21.4	28.42	26.24	8.85	13.09	30.42	7.97	13.04	14.36	11.55	20.6	8.14
Merged-chr18-44393562-3	chr18	44393407	44393607	+	870.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	13007.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	8.08	8.05	7.42	10.46	6.95	10.98	10.63	5.24	14.55	28.62	13.57	4.07
Merged-chr3-132064162-2	chr3	132064068	132064268	+	870.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21124.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.65	0.75	5.13	6.44	10.23	10.66	7.31	28.07	9.83	13.05	16.58	5.64
Merged-chr6-72379590-2	chr6	72379493	72379693	+	870.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	875.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	10.9	6.54	3.42	5.23	10.64	11.6	9.3	7.23	15.93	13.56	12.56	6.27
Merged-chr2-154714160-2	chr2	154714062	154714262	+	870.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57136.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	13.33	8.3	14.83	21.72	12.68	13.8	9.3	11.24	7.67	6.53	13.57	5.33
Merged-chr1-60016351-4	chr1	60016193	60016393	+	870.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357296, intron 3 of 10)	intron (NM_001357296, intron 3 of 10)	26829.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	13.33	5.79	23.39	13.27	38.46	27.28	27.57	52.6	15.34	13.56	17.08	11.28
Merged-chr14-76690433-3	chr14	76690341	76690541	+	870.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12873.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	9.29	12.07	17.68	14.08	15.55	8.47	12.62	20.97	8.85	9.04	17.59	8.14
Merged-chr1-162665292-3	chr1	162665183	162665383	+	870.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7064.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	15.75	10.31	26.24	9.25	17.59	10.66	8.97	11.94	25.96	11.55	35.68	13.16
Merged-chr12-11196426-2	chr12	11196338	11196538	+	870.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_131084, exon 3 of 5)	non-coding (NR_131084, exon 3 of 5)	8064.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	19.38	12.58	8.56	8.45	13.09	17.56	10.63	19.26	7.67	7.03	8.04	8.14
Merged-chr18-56470973-3	chr18	56470855	56471055	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360917, intron 2 of 13)	intron (NM_001360917, intron 2 of 13)	38823.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	16.96	14.09	21.11	14.88	22.09	24.77	12.95	16.32	8.65	10.54	10.55	4.07
Merged-chr11-80209594-3	chr11	80209490	80209690	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	535.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	8.08	13.08	10.84	9.65	11.86	13.17	7.64	9.39	15.74	13.05	15.58	11.28
Merged-chr10-108140922-3	chr10	108140813	108141013	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21487.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	9.69	9.06	6.85	7.64	34.36	15.68	15.28	28.07	18.29	9.04	26.63	12.84
Merged-chr1-105665203-3	chr1	105665089	105665289	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 1 of 28)	intron (NM_173187, intron 1 of 28)	1328.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	14.54	8.3	27.95	13.67	15.14	15.68	11.63	18.2	20.85	16.07	13.06	11.28
Merged-chr6-18845845-3	chr6	18845774	18845974	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-2761.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	22.61	19.12	25.1	42.63	24.55	10.66	25.24	1.85	6.29	14.06	14.57	10.65
Merged-chr4-89212410-1	chr4	89212310	89212510	+	870.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	69782.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	1.21	1.51	5.7	7.24	10.23	6.9	10.63	12.14	7.87	8.54	12.56	3.13
Merged-chr13-58388090-3	chr13	58387974	58388174	+	870.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2849.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	13.73	13.83	4.56	6.44	6.95	10.98	5.31	6.73	14.55	12.55	8.54	5.33
Merged-chr17-36111720-2	chr17	36111646	36111846	+	870.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271005)	promoter-TSS (NM_001271005)	-70.0	NM_001271005	667803.0	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	0.0	0.0	0.0	0.0	7.77	8.47	2.33	9.03	70.41	68.79	109.54	50.12
Merged-chr11-69414620-3	chr11	69414500	69414700	+	870.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-925.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	12.52	5.53	23.39	14.88	15.55	12.86	15.61	20.22	14.36	17.07	12.56	11.59
Merged-chr2-153092862-3	chr2	153092762	153092962	+	870.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15606.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	10.09	6.04	12.55	12.87	11.05	14.11	20.26	14.86	14.16	33.14	22.61	14.1
Merged-chr11-95006737-3	chr11	95006601	95006801	+	870.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172261, exon 10 of 10)	3' UTR (NM_172261, exon 10 of 10)	-3178.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	16.56	12.58	3.42	10.86	13.09	5.33	3.65	7.57	10.42	7.53	10.55	4.07
Merged-chr7-141057183-3	chr7	141057101	141057301	+	870.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4073.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	8.08	9.56	29.09	18.5	6.55	14.74	6.31	22.29	34.22	18.08	50.75	27.57
Merged-chr17-26437256-1	chr17	26437156	26437356	+	870.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22291.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.0	0.75	1.14	0.0	0.41	3.45	0.66	1.99	13.57	11.55	18.09	17.23
Merged-chr6-6005890-1	chr6	6005790	6005990	+	870.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010063, intron 14 of 16)	CpG	-28497.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	2.02	6.79	1.71	4.02	8.59	10.66	11.29	9.08	4.33	5.52	6.03	2.19
Merged-chr4-43384257-1	chr4	43384157	43384357	+	870.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	2275.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	3.63	1.01	2.28	5.23	6.55	3.14	2.66	7.15	17.51	18.58	12.56	12.53
Merged-chr6-90538101-1	chr6	90538001	90538201	+	870.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12692.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	5.65	3.77	5.13	5.63	9.41	4.39	8.3	6.56	6.69	3.01	12.56	3.45
Merged-chr2-174453894-3	chr2	174453840	174454040	+	870.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080971, intron 1 of 3)	intron (NM_001080971, intron 1 of 3)	3345.0	NM_001080971	545486.0	Mm.45285	NM_001080971	ENSMUSG00000016255	Tubb1	2810484G07Rik|M(beta)1	tubulin, beta 1 class VI	protein-coding	11.31	13.33	26.81	8.85	5.73	6.9	2.66	6.08	23.8	20.08	13.57	12.22
Merged-chr2-35732784-2	chr2	35732683	35732883	+	870.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36051.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	16.56	14.09	21.68	11.26	13.09	11.29	6.98	9.34	8.06	7.53	10.55	13.16
Merged-chr8-90977086-3	chr8	90976987	90977187	+	870.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 6 of 39)	intron (NM_177224, intron 6 of 39)	44838.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	16.15	6.54	13.69	24.13	13.09	6.59	13.95	14.8	7.28	6.53	21.61	8.46
Merged-chr16-76406474-2	chr16	76406377	76406577	+	870.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32650.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	1.62	8.55	5.13	5.23	7.36	9.72	6.98	15.59	16.33	16.57	20.6	6.27
Merged-chr8-61931335-2	chr8	61931239	61931439	+	870.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293783, intron 1 of 37)	Lx7|LINE|L1	3252.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	4.04	6.29	6.85	3.22	8.59	8.47	2.66	17.55	10.42	15.06	9.55	10.02
Merged-chr10-9677135-3	chr10	9677031	9677231	+	870.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1923.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	8.08	13.83	5.7	16.49	20.05	19.44	10.63	24.34	18.1	15.57	10.05	10.65
Merged-chr4-130921386-3	chr4	130921285	130921485	+	870.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8051.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.65	9.56	9.7	7.64	13.09	5.02	13.29	29.72	8.46	12.05	12.56	10.34
Merged-chr3-9849983-3	chr3	9849878	9850078	+	870.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16299.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.04	10.82	6.85	9.25	6.95	13.8	17.94	19.88	22.82	18.08	18.09	13.16
Merged-chr10-120857799-3	chr10	120857684	120857884	+	870.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038023, intron 1 of 2)	intron (NR_038023, intron 1 of 2)	155.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	12.11	10.06	9.7	8.85	6.55	21.01	35.54	22.88	10.82	15.57	14.57	15.66
Merged-chr16-78197670-3	chr16	78197563	78197763	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57791.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	8.48	9.81	15.97	11.26	15.14	16.93	10.63	22.46	36.78	30.63	36.68	14.1
Merged-chr13-3743253-3	chr13	3743139	3743339	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61079.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	12.11	11.32	15.4	14.08	14.73	10.03	11.29	14.66	11.21	7.53	9.55	11.9
Merged-chr2-11712920-3	chr2	11712813	11713013	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	7201.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	24.23	15.34	13.69	3.62	6.95	24.46	5.65	7.57	22.42	25.11	9.55	5.95
Merged-chr14-50931846-3	chr14	50931742	50931942	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-993.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	11.31	13.08	13.69	8.04	12.27	12.23	5.65	17.94	8.06	12.55	20.6	12.22
Merged-chr3-96227549-3	chr3	96227444	96227644	+	870.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18D_MM|LTR|ERVK	6472.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	12.92	6.79	14.83	2.82	9.41	10.98	5.65	8.97	12.78	14.06	11.05	12.84
Merged-chr10-67704853-1	chr10	67704753	67704953	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-132894.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	3.63	2.52	5.13	4.83	10.64	4.7	5.65	7.35	6.49	5.02	4.52	5.64
Merged-chr1-83747672-2	chr1	83747566	83747766	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-339466.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	7.27	5.28	11.41	6.84	5.32	4.08	8.97	10.23	12.39	8.03	11.05	11.28
Merged-chr16-33535117-1	chr16	33535017	33535217	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 2 of 11)	intron (NM_001083902, intron 2 of 11)	16522.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.63	1.76	7.99	5.23	7.36	4.39	8.97	12.56	2.16	2.51	9.55	1.57
Merged-chr1-156470376-1	chr1	156470276	156470476	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3952.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.42	2.01	3.42	7.64	13.5	4.39	7.31	11.97	2.16	1.0	4.52	5.95
Merged-chr13-60508462-2	chr13	60508439	60508639	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93408.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.83	10.06	8.56	3.22	0.82	1.88	1.0	1.46	5.11	9.04	4.52	6.89
Merged-chr12-64966826-1	chr12	64966726	64966926	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1084.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	4.85	4.78	2.28	4.42	6.55	5.33	8.64	7.51	8.65	7.53	8.54	8.46
Merged-chr3-84582142-2	chr3	84582066	84582266	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	459.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	9.69	9.31	10.84	9.25	11.45	11.29	12.95	11.13	7.28	5.02	10.05	14.1
Merged-chr3-121293370-2	chr3	121293256	121293456	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1616.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	5.25	18.36	10.27	9.65	13.09	8.47	1.99	6.7	19.67	21.09	20.1	5.01
Merged-chr17-62558388-3	chr17	62558297	62558497	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	322920.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	15.34	4.53	11.41	19.31	16.77	10.98	15.28	30.81	23.21	12.05	37.69	14.1
Merged-chr7-28593619-3	chr7	28593502	28593702	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	4582.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	19.79	13.83	17.11	7.64	11.45	17.87	4.65	7.65	16.52	13.05	12.56	7.83
Merged-chr5-74312009-1	chr5	74311909	74312109	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	116683.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	1.21	2.01	1.14	3.62	10.64	15.68	8.64	11.58	0.79	2.01	5.02	1.25
Merged-chr9-63678308-1	chr9	63678208	63678408	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	75662.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	5.25	6.29	11.98	7.24	11.86	9.72	8.64	9.67	5.31	10.54	8.54	7.83
Merged-chr4-102605972-2	chr4	102605871	102606071	+	870.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16128.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	12.52	9.81	17.68	8.85	29.86	8.78	16.61	21.84	0.79	3.51	1.0	0.63
Merged-chr2-128742699-3	chr2	128742667	128742867	+	870.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	43852.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	8.08	2.52	7.99	4.02	18.82	20.38	13.95	16.6	6.1	8.03	8.04	4.07
Merged-chr13-34711636-3	chr13	34711540	34711740	+	870.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28002.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	19.38	8.8	13.12	9.65	9.0	21.95	5.31	13.09	12.78	5.52	18.59	11.28
Merged-chr15-26365595-3	chr15	26365498	26365698	+	870.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	56550.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	8.88	3.27	9.7	12.07	39.27	31.98	33.22	46.26	32.06	27.11	44.22	15.66
Merged-chr10-121505421-2	chr10	121505319	121505519	+	870.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29169.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.86	6.54	5.7	5.63	10.64	6.27	4.65	10.57	19.28	12.55	15.58	13.78
Merged-chr12-102339317-1	chr12	102339217	102339417	+	870.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	55676.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	7.27	4.02	4.56	5.63	9.0	13.48	8.64	10.01	1.77	1.51	3.52	7.52
Merged-chr1-138541743-3	chr1	138541660	138541860	+	870.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	77997.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.86	12.58	7.99	16.09	10.64	11.29	5.98	19.93	16.52	13.05	14.07	10.96
Merged-chr6-66952008-3	chr6	66951941	66952141	+	870.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	55150.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.86	15.34	11.98	22.12	16.36	10.66	12.62	20.36	17.11	10.04	21.1	9.08
Merged-chr12-75726525-2	chr12	75726473	75726673	+	870.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	9156.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	2.83	11.32	3.42	13.27	8.18	4.7	9.3	12.64	8.85	4.02	7.54	5.33
Merged-chr13-113479421-2	chr13	113479323	113479523	+	870.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	23421.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.04	2.26	9.13	3.62	7.77	15.99	17.27	12.93	16.33	9.04	19.6	5.01
Merged-chr4-141573778-2	chr4	141573647	141573847	+	870.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR37A|LTR|ERV1	26177.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	4.44	1.26	1.14	2.01	13.09	14.11	15.94	15.2	9.05	17.07	6.03	5.01
Merged-chr14-36862529-2	chr14	36862390	36862590	+	870.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57045.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.04	6.04	3.42	2.41	7.77	1.88	6.31	7.15	4.13	5.02	12.06	3.45
Merged-chr3-115816073-3	chr3	115815967	115816167	+	870.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71992.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	10.09	13.83	8.56	12.87	26.18	21.64	6.31	19.65	25.18	19.08	39.7	11.9
Merged-chr19-14507811-3	chr19	14507709	14507909	+	870.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-69303.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	16.56	8.05	18.25	18.5	10.64	10.03	13.29	16.57	16.52	9.54	21.1	10.34
Merged-chr12-82122701-3	chr12	82122601	82122801	+	870.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47315.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.63	3.02	15.97	11.66	14.32	25.09	25.58	19.99	7.47	4.02	23.62	10.96
Merged-chr10-16989772-1	chr10	16989672	16989872	+	870.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038020, intron 2 of 8)	intron (NR_038020, intron 2 of 8)	106010.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.04	2.26	5.13	12.07	9.82	1.25	8.97	9.62	6.88	11.05	8.54	3.45
Merged-chr14-64310045-3	chr14	64309946	64310146	+	870.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	106910.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	7.67	12.58	21.11	10.86	11.45	10.98	15.94	21.25	13.77	6.53	30.65	11.59
Merged-chr15-102451089-3	chr15	102450995	102451195	+	870.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356575, intron 7 of 11)	intron (NM_001356575, intron 7 of 11)	5728.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	12.92	10.06	15.97	12.47	24.96	27.28	14.62	22.88	17.9	21.09	16.58	7.52
Merged-chr15-25773948-3	chr15	25773837	25774037	+	870.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001353141)	promoter-TSS (NM_001353141)	-76.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.42	7.55	14.26	11.26	10.23	22.89	11.63	20.24	19.67	5.52	24.62	10.02
Merged-chr9-92458653-1	chr9	92458553	92458753	+	870.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178711, intron 1 of 8)	intron (NM_178711, intron 1 of 8)	1275.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	2.42	3.52	0.57	0.8	8.59	9.09	4.32	10.26	0.39	1.0	3.01	4.7
Merged-chr1-191965262-3	chr1	191965164	191965364	+	870.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12106.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	11.31	7.29	10.27	5.63	18.82	4.39	8.64	9.48	20.26	19.08	28.64	8.14
Merged-chr16-49909737-2	chr16	49909653	49909853	+	870.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-46077.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	10.9	5.53	8.56	7.24	14.32	27.28	6.64	20.05	20.85	7.53	14.57	8.46
Merged-chr10-37194267-4	chr10	37194163	37194363	+	870.2291869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55337.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	9.29	10.82	3.42	10.05	8.59	16.31	15.28	18.36	13.18	8.54	17.59	10.34
Merged-chr15-83561304-3	chr15	83561231	83561431	+	870.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-2242.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	11.71	18.61	26.24	8.85	18.41	20.38	11.63	20.69	12.39	22.09	16.58	12.53
Merged-chr1-92679020-3	chr1	92678929	92679129	+	870.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30188.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	14.13	13.33	23.39	10.05	22.09	32.93	18.6	25.99	11.41	13.56	21.1	10.96
Merged-chr2-117122879-3	chr2	117122811	117123011	+	870.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	1840.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	8.48	12.07	10.27	5.63	13.91	11.29	7.97	8.41	19.87	13.05	24.12	9.4
Merged-chr17-26885184-3	chr17	26885099	26885299	+	870.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31892.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	12.92	10.31	22.82	7.64	20.46	17.25	7.64	21.76	20.46	13.05	18.09	9.08
Merged-chr13-49189185-3	chr13	49189066	49189266	+	870.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	1619.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.85	3.77	17.11	8.04	11.45	13.48	15.28	9.08	9.83	17.07	18.09	18.17
Merged-chr7-141170090-3	chr7	141169988	141170188	+	870.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172100, intron 1 of 9)	B1_Mur3|SINE|Alu	-1152.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	10.9	13.08	11.41	8.85	13.5	16.31	14.95	25.4	18.69	12.55	26.13	15.98
Merged-chr19-33101511-3	chr19	33101405	33101605	+	870.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55607.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	8.08	11.32	21.11	32.18	29.46	10.66	19.27	31.54	16.92	15.57	15.07	14.72
Merged-chr2-32784450-3	chr2	32784346	32784546	+	870.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025619)	promoter-TSS (NM_025619)	-41.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	12.52	5.03	6.28	9.65	22.5	12.23	2.99	7.54	19.67	12.55	16.58	6.58
Merged-chr9-7869412-3	chr9	7869301	7869501	+	870.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	3769.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	8.48	10.31	17.68	4.83	13.91	7.84	6.64	5.86	14.16	13.56	10.05	10.02
Merged-chr8-70893778-3	chr8	70893684	70893884	+	870.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029751)	TTS (NM_029751)	-1027.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	12.11	11.57	14.83	7.64	6.95	13.8	6.31	7.49	20.06	21.59	15.58	12.84
Merged-chr5-30840916-3	chr5	30840816	30841016	+	870.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-20891.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	7.67	5.53	15.97	12.87	6.14	17.87	11.63	15.5	12.78	20.08	22.11	7.21
Merged-chr11-119955634-3	chr11	119955517	119955717	+	870.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12525.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	10.9	10.56	17.68	15.69	14.32	12.23	2.33	16.18	11.8	9.04	9.04	9.71
Merged-chr10-39412306-3	chr10	39412160	39412360	+	870.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	42461.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	13.73	6.79	4.56	4.42	1.64	10.35	13.62	9.45	12.59	9.54	13.06	9.4
Merged-chr6-84640918-2	chr6	84640806	84641006	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-46998.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	15.34	2.77	18.25	17.7	6.55	5.96	12.29	12.25	5.51	1.51	1.0	1.88
Merged-chr16-35932397-3	chr16	35932303	35932503	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013371, exon 3 of 5)	exon (NM_001013371, exon 3 of 5)	-6067.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	16.15	10.82	8.56	6.44	5.73	10.98	8.64	16.29	18.69	7.53	15.07	12.53
Merged-chr7-67422028-3	chr7	67421913	67422113	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49155.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	10.9	6.54	11.98	6.44	12.27	21.01	18.93	20.58	15.74	17.07	26.63	4.7
Merged-chr11-101785366-3	chr11	101785279	101785479	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316366)	promoter-TSS (NM_001316366)	-69.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	14.54	4.28	4.56	10.86	13.5	13.8	10.63	14.22	19.08	16.07	22.61	7.83
Merged-chr16-70297829-1	chr16	70297729	70297929	+	870.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16120.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.62	1.51	1.14	2.41	2.45	5.33	1.66	0.62	12.19	16.07	6.53	1.57
Merged-chr10-12698059-1	chr10	12697959	12698159	+	870.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011682, exon 24 of 74)	exon (NM_011682, exon 24 of 74)	163676.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.62	2.01	3.42	2.41	0.41	3.76	0.66	4.4	14.36	5.52	15.07	6.89
Merged-chr12-84450503-1	chr12	84450403	84450603	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134042, intron 1 of 11)	intron (NM_134042, intron 1 of 11)	521.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	5.25	2.01	9.13	5.23	8.18	8.15	4.65	8.24	5.7	4.52	8.54	6.89
Merged-chr13-55517261-1	chr13	55517161	55517361	+	870.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3815.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	3.23	1.01	3.42	1.61	0.82	3.45	1.66	1.74	3.34	2.51	5.53	3.45
Merged-chr5-92309532-1	chr5	92309432	92309632	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172713, intron 1 of 21)	intron (NM_172713, intron 1 of 21)	492.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	3.63	4.28	2.28	0.8	1.23	10.98	4.32	8.1	4.13	7.03	2.51	7.21
Merged-chr13-37121797-1	chr13	37121697	37121897	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71553.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	6.46	0.5	2.28	4.83	12.27	9.41	7.64	10.54	2.75	5.52	3.52	1.25
Merged-chr3-95142008-1	chr3	95141908	95142108	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	352.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	5.65	2.77	5.13	4.02	9.0	5.33	3.32	7.15	7.08	5.52	13.57	5.95
Merged-chr5-53187371-1	chr5	53187271	53187471	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172710, intron 3 of 23)	UCON28b|Unknown|Unknown	26081.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	6.86	1.51	4.56	4.83	9.41	5.33	17.61	18.08	4.92	5.02	7.54	3.13
Merged-chr15-31474159-3	chr15	31474089	31474289	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 20 of 25)	intron (NM_172606, intron 20 of 25)	-20500.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	6.86	5.53	13.12	17.7	14.73	19.13	32.88	38.78	22.82	9.54	25.63	31.64
Merged-chr16-89866640-1	chr16	89866540	89866740	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 7 of 27)	intron (NM_009384, intron 7 of 27)	-48288.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.83	1.51	6.28	8.85	4.91	0.63	9.63	7.4	5.9	4.02	5.02	9.08
Merged-chr15-103087456-1	chr15	103087356	103087556	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	53061.0	NM_013553	15423.0	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	3.23	12.58	11.41	2.41	2.86	1.25	2.66	0.53	4.52	0.0	1.0	1.25
Merged-chr13-112004336-2	chr13	112004235	112004435	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.65	3.27	4.56	10.05	15.55	17.56	9.3	20.13	15.34	11.55	16.58	12.22
Merged-chr6-106443457-1	chr6	106443357	106443557	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	305580.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	1.21	0.75	3.42	2.41	4.91	5.96	8.97	12.03	5.7	7.03	6.53	2.19
Merged-chr9-114498412-1	chr9	114498312	114498512	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1868.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	4.44	4.78	2.28	8.04	3.27	3.45	4.98	5.24	6.29	3.51	2.01	5.01
Merged-chr9-8017412-1	chr9	8017312	8017512	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12816.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	9.29	5.28	5.13	11.26	9.82	24.15	7.31	18.81	13.37	8.03	8.54	6.89
Merged-chr12-31350419-1	chr12	31350319	31350519	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007861, intron 1 of 13)	intron (NM_007861, intron 1 of 13)	1052.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	15.34	5.28	5.13	1.21	7.77	15.37	9.63	4.32	10.23	6.03	6.53	5.33
Merged-chr11-97663174-4	chr11	97663072	97663272	+	869.9761960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139311)	promoter-TSS (NM_139311)	-240.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	8.48	3.27	12.55	2.82	12.68	17.25	5.98	3.7	19.08	25.61	33.67	5.33
Merged-chr19-40737317-2	chr19	40737205	40737405	+	869.9500119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	77535.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.04	7.55	6.85	3.22	13.91	13.17	6.64	14.38	20.46	19.58	13.06	14.72
Merged-chr15-50870907-3	chr15	50870807	50871007	+	869.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	MIRb|SINE|MIR	18142.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	12.92	9.56	6.85	10.05	12.27	5.96	7.97	8.69	13.77	12.55	9.04	10.02
Merged-chr19-8771056-3	chr19	8770968	8771168	+	869.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025791)	promoter-TSS (NM_025791)	72.0	NM_025791	66836.0	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	17.77	16.1	7.99	4.83	15.96	12.23	10.96	8.55	13.57	12.05	20.1	5.33
Merged-chr3-146331116-3	chr3	146331016	146331216	+	869.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47828.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	10.9	17.61	6.85	3.62	19.23	23.83	9.3	6.36	20.06	16.07	9.55	5.01
Merged-chr9-50661659-3	chr9	50661555	50661755	+	869.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1875.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	8.08	10.06	19.97	4.83	15.14	13.8	7.31	8.07	34.62	13.05	17.08	23.49
Merged-chr14-25461023-3	chr14	25460907	25461107	+	869.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	CpG	1822.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	21.4	11.57	11.41	8.45	19.64	8.47	13.95	11.86	7.28	11.05	14.07	13.47
Merged-chr4-126136933-2	chr4	126136852	126137052	+	869.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 8 of 10)	intron (NM_028800, intron 8 of 10)	-11051.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	3.63	5.28	1.14	9.65	11.45	13.48	14.28	12.03	10.82	17.07	10.05	6.89
Merged-chr15-9128705-2	chr15	9128583	9128783	+	869.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11771.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	12.11	10.82	10.84	14.48	10.23	8.15	3.32	12.53	1.77	1.51	1.0	0.31
Merged-chr1-124071878-2	chr1	124071791	124071991	+	869.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26332.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.44	2.77	5.7	11.66	19.23	10.03	15.94	22.63	12.39	13.05	15.58	11.59
Merged-chr11-83602159-3	chr11	83602076	83602276	+	869.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	L2a|LINE|L2	-9089.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	9.69	9.81	9.13	7.24	20.86	21.32	17.94	18.22	17.11	21.09	22.61	18.17
Merged-chr15-63625022-3	chr15	63624928	63625128	+	869.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-145420.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	7.27	10.56	19.4	16.49	17.18	12.54	13.62	18.98	12.59	13.05	20.1	8.14
Merged-chr2-102924709-2	chr2	102924610	102924810	+	869.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23045.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.88	6.04	4.56	16.49	17.59	16.62	11.29	15.67	14.75	7.53	20.1	4.07
Merged-chr3-90491508-2	chr3	90491418	90491618	+	869.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	-505.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	21.0	12.83	14.83	8.04	11.86	14.74	5.98	4.32	21.64	24.1	22.11	18.17
Merged-chr10-11323760-2	chr10	11323659	11323859	+	869.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19686.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	10.5	20.37	13.12	5.63	18.0	13.48	15.94	20.02	16.52	7.53	5.02	6.58
Merged-chr12-76887008-2	chr12	76886898	76887098	+	869.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145927, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	49531.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	4.85	8.05	6.85	14.08	10.64	9.09	10.96	16.35	27.54	13.56	25.63	10.34
Merged-chr16-44986287-2	chr16	44986202	44986402	+	869.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	42624.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	6.46	5.03	5.7	12.87	15.14	8.47	10.96	16.01	20.46	15.06	22.11	10.02
Merged-chr9-63916126-1	chr9	63916026	63916226	+	869.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	105933.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	2.83	7.04	1.14	2.82	12.27	10.98	2.99	10.49	7.47	5.02	9.55	4.07
Merged-chr1-59482794-3	chr1	59482682	59482882	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008057, exon 1 of 1)	5' UTR (NM_008057, exon 1 of 1)	635.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	5.65	4.53	9.7	15.69	5.73	4.39	13.29	12.48	13.18	12.55	8.04	10.02
Merged-chr16-33375669-3	chr16	33375568	33375768	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5068.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	7.67	9.06	11.41	9.65	15.55	14.74	9.63	7.77	5.9	14.56	21.61	14.1
Merged-chr16-78237898-3	chr16	78237775	78237975	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17579.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.44	7.29	2.85	8.85	18.82	21.32	23.25	29.61	27.73	26.11	32.66	16.29
Merged-chr4-35240068-3	chr4	35239961	35240161	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14181.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	14.94	16.35	11.41	11.26	12.68	16.62	13.62	21.79	15.34	8.54	20.1	7.83
Merged-chr1-55667141-3	chr1	55667036	55667236	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	261190.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	13.33	6.54	15.97	15.28	4.09	8.78	3.99	11.89	20.06	13.56	17.08	11.9
Merged-chr5-64809528-3	chr5	64809443	64809643	+	869.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6020.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	12.92	11.07	18.25	13.27	13.5	19.13	9.63	23.92	18.29	15.06	19.6	7.52
Merged-chr17-24708070-2	chr17	24707976	24708176	+	869.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	-423.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	8.08	15.34	11.98	6.44	5.32	3.45	1.33	1.71	19.08	8.03	19.09	13.16
Merged-chr9-104660010-2	chr9	104659904	104660104	+	869.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	90521.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	6.06	6.04	17.11	21.72	20.05	6.59	22.59	29.27	3.54	5.02	6.53	9.4
Merged-chr2-164641321-2	chr2	164641223	164641423	+	869.724976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2521.0	NM_001012723	277345.0	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	5.25	5.03	8.56	9.65	13.91	9.72	4.65	11.21	15.54	19.08	13.06	14.1
Merged-chrX-99135095-3	chrX	99134995	99135195	+	869.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010110)	promoter-TSS (NM_010110)	-966.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	13.33	9.31	8.56	14.48	20.86	21.01	5.98	15.11	14.16	16.07	11.56	4.7
Merged-chr10-60391146-2	chr10	60391031	60391231	+	869.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8595.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.23	4.02	1.14	9.25	9.82	5.33	9.97	11.83	8.46	14.56	17.59	11.59
Merged-chr11-4873942-3	chr11	4873841	4874041	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008698)	promoter-TSS (NM_008698)	-10.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	23.02	14.09	4.56	10.86	18.82	22.58	8.97	17.66	16.92	13.05	20.1	14.1
Merged-chr11-85525802-1	chr11	85525702	85525902	+	869.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172638.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	2.01	3.42	0.8	12.68	8.78	3.99	6.39	7.87	9.04	6.53	7.83
Merged-chr2-13272986-3	chr2	13272873	13273073	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1558.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	7.67	6.04	17.11	13.67	18.41	9.09	16.28	13.54	16.52	5.52	22.61	12.84
Merged-chr11-70506627-3	chr11	70506529	70506729	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029360, intron 1 of 4)	intron (NM_029360, intron 1 of 4)	1355.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	14.54	8.05	10.27	17.7	18.82	15.37	3.32	11.78	11.6	12.05	9.55	9.71
Merged-chr9-115746625-3	chr9	115746532	115746732	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162823.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	2.83	7.29	5.7	13.27	1.64	1.88	11.63	8.19	12.19	7.03	25.12	18.8
Merged-chr11-69122352-1	chr11	69122252	69122452	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033041, intron 3 of 3)	CpG	1899.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	6.46	19.62	11.41	18.9	14.32	5.96	12.62	7.32	13.77	12.55	9.55	12.22
Merged-chrX-162652617-1	chrX	162652517	162652717	+	869.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	MTE2b|LTR|ERVL-MaLR	-8959.0	NM_001359102	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	2.42	2.01	0.57	4.02	12.27	11.29	5.65	9.67	1.18	1.0	1.51	0.94
Merged-chr7-114083947-1	chr7	114083847	114084047	+	869.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	33834.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.06	11.82	6.85	5.23	5.73	15.99	3.99	1.35	25.96	21.59	18.09	4.39
Merged-chr12-73613309-3	chr12	73613197	73613397	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	28501.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	10.09	7.29	13.12	7.24	15.14	22.26	8.64	17.13	16.52	16.07	8.54	18.17
Merged-chr13-43531526-3	chr13	43531337	43531537	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28754.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	6.06	6.29	3.42	11.26	25.77	16.31	17.61	19.68	5.31	13.56	8.04	10.96
Merged-chr17-34398274-3	chr17	34398156	34398356	+	869.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	-564.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	12.52	19.12	16.54	4.83	19.23	19.44	5.98	7.74	37.76	25.11	22.61	14.41
Merged-chr3-89456904-3	chr3	89456784	89456984	+	869.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	-2234.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	13.33	9.31	13.12	4.83	23.73	10.03	4.32	13.26	15.74	17.57	21.61	12.22
Merged-chr6-28421034-3	chr6	28420982	28421182	+	869.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028900, exon 1 of 2)	exon (NM_028900, exon 1 of 2)	642.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	4.44	5.53	7.42	12.87	5.32	8.15	5.98	7.65	18.1	17.57	16.58	6.89
Merged-chr10-130311812-2	chr10	130311798	130311998	+	869.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-10954.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	2.83	1.51	3.99	1.61	2.86	3.76	3.32	3.93	1.57	8.54	8.04	3.45
Merged-chr12-54993813-3	chr12	54993719	54993919	+	869.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7483.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	17.36	13.58	16.54	14.88	18.0	15.05	14.28	18.14	15.14	11.55	11.56	7.83
Merged-chr8-3672196-4	chr8	3672061	3672261	+	869.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357661, intron 1 of 1)	intron (NM_001357661, intron 1 of 1)	230.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	12.11	11.07	1.71	15.69	17.59	15.37	22.59	12.7	8.85	12.05	20.6	6.27
Merged-chr5-64852899-3	chr5	64852794	64852994	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	49371.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	13.73	15.09	10.27	10.46	23.73	18.19	13.29	18.25	23.21	19.08	16.08	15.98
Merged-chr1-64956697-3	chr1	64956517	64956717	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 1 of 7)	CpG	207.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.23	11.57	2.28	8.04	9.82	8.47	5.31	6.22	8.65	9.54	5.02	3.45
Merged-chr7-132347773-3	chr7	132347623	132347823	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30495.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	5.65	5.53	6.85	5.23	11.05	10.66	6.31	7.79	7.08	11.55	12.56	2.19
Merged-chr2-11589524-3	chr2	11589448	11589648	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 7 of 11)	intron (NM_152824, intron 7 of 11)	13651.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	4.44	5.28	13.69	16.09	2.86	5.02	13.29	17.89	11.6	8.54	11.56	7.83
Merged-chr17-73936800-3	chr17	73936692	73936892	+	869.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	13404.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	15.34	19.12	23.96	10.05	16.77	19.13	12.29	16.37	7.67	18.08	14.57	9.71
Merged-chr3-132870271-3	chr3	132870173	132870373	+	869.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	8323.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	16.15	21.38	17.11	14.48	18.0	22.26	17.94	33.22	11.01	10.04	13.06	13.16
Merged-chr19-37265967-2	chr19	37265869	37266069	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1874.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	7.67	5.79	9.7	0.8	6.55	6.9	2.33	4.91	12.78	7.53	8.04	14.1
Merged-chr3-7612935-2	chr3	7612903	7613103	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-110.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	4.04	4.53	5.13	9.65	5.73	5.02	6.64	3.73	6.88	8.54	7.03	4.07
Merged-chr17-34633451-2	chr17	34633364	34633564	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3778.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	1.62	2.01	1.14	2.41	4.91	6.59	1.66	4.88	20.26	19.58	9.04	5.95
Merged-chr10-84390917-1	chr10	84390817	84391017	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49554.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.85	6.04	5.13	4.42	5.73	6.59	8.97	5.78	5.11	7.03	6.53	2.19
Merged-chr14-31392095-5	chr14	31392021	31392221	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	25556.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.25	7.04	3.99	3.62	3.27	3.14	5.65	4.85	3.15	5.52	3.52	3.13
Merged-chr4-103039965-2	chr4	103039866	103040066	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146254, intron 16 of 16)	intron (NM_146254, intron 16 of 16)	-13124.0	NM_001290648	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	5.25	9.81	22.25	9.25	9.0	5.96	7.31	10.85	5.11	6.53	6.03	5.33
Merged-chr9-50970599-2	chr9	50970506	50970706	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	38467.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	12.11	10.56	7.99	2.41	9.82	4.7	2.66	8.83	5.11	7.03	9.55	3.13
Merged-chr8-98999357-1	chr8	98999257	98999457	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12530.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	2.83	3.52	2.85	3.22	9.82	6.59	4.98	12.98	3.54	6.03	7.03	0.63
Merged-chr16-35947105-3	chr16	35946983	35947183	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030253, intron 3 of 10)	B2_Mm1t|SINE|B2	-8056.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	10.09	14.59	18.25	7.24	9.0	10.03	0.33	7.09	19.87	17.07	17.59	16.6
Merged-chr11-30224755-1	chr11	30224655	30224855	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4983.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.42	3.52	2.28	8.45	3.27	7.53	6.98	11.86	4.52	3.01	3.52	3.76
Merged-chr18-44780973-3	chr18	44780872	44781072	+	869.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	31210.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.42	6.04	25.1	22.93	9.41	0.94	7.31	12.39	12.0	10.04	12.06	13.47
Merged-chr1-191329149-3	chr1	191329052	191329252	+	869.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	3187.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	13.33	11.57	11.41	17.7	15.55	8.78	4.98	12.03	19.67	17.07	15.07	5.95
Merged-chr9-77806938-3	chr9	77806843	77807043	+	869.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52408.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	9.29	8.3	11.98	13.67	14.73	18.81	5.98	17.44	23.01	16.57	19.6	15.66
Merged-chr7-114415204-4	chr7	114415062	114415262	+	869.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	-1.0	NR_029438	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	10.5	5.28	9.13	6.03	22.5	12.23	9.63	16.93	20.46	17.57	21.61	16.92
Merged-chr13-30750663-3	chr13	30750562	30750762	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013674, exon 2 of 9)	exon (NM_013674, exon 2 of 9)	1429.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	21.0	13.33	18.25	10.86	16.77	31.36	11.63	12.31	16.33	16.57	13.57	7.83
Merged-chr1-136430362-3	chr1	136430260	136430460	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026500, intron 4 of 7)	intron (NM_026500, intron 4 of 7)	-14841.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	6.86	11.57	12.55	11.66	16.36	5.96	6.98	24.56	12.98	7.03	26.13	9.71
Merged-chr11-72467219-3	chr11	72467146	72467346	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	7781.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	11.71	8.8	18.25	14.48	15.14	23.52	19.93	14.1	7.47	11.55	16.58	10.34
Merged-chr1-152038442-4	chr1	152038331	152038531	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	51889.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.63	7.8	9.13	7.64	10.23	6.59	3.65	11.19	7.28	2.01	4.52	3.76
Merged-chr9-119963426-3	chr9	119963307	119963507	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028735, intron 21 of 28)	intron (NM_028735, intron 21 of 28)	19616.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	12.52	15.34	5.13	12.87	4.5	17.56	14.28	10.04	12.78	3.01	10.55	9.4
Merged-chr12-81657818-3	chr12	81657705	81657905	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26556.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	19.79	14.59	14.83	10.86	11.05	9.09	7.64	8.05	17.11	16.57	9.55	9.71
Merged-chr3-31133851-3	chr3	31133744	31133944	+	869.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16076.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	14.13	7.8	14.83	13.27	18.41	8.78	19.27	24.67	13.18	15.57	15.58	15.04
Merged-chr17-67382120-2	chr17	67382025	67382225	+	869.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27634.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.25	4.78	5.13	10.05	4.91	7.53	3.32	9.42	11.8	13.05	16.08	5.33
Merged-chr11-114653872-3	chr11	114653788	114653988	+	869.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14655.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	13.33	8.8	14.83	10.46	22.09	17.87	9.63	14.61	19.67	22.09	19.6	15.35
Merged-chr13-100403123-2	chr13	100403012	100403212	+	869.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49752.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.81	0.0	1.14	3.22	14.73	16.31	23.92	10.71	34.22	43.18	30.15	31.33
Merged-chr5-121385082-3	chr5	121384984	121385184	+	869.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172275, intron 1 of 11)	intron (NM_172275, intron 1 of 11)	325.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	7.67	12.58	14.26	11.26	9.41	14.42	2.99	10.4	9.64	11.05	24.62	12.84
Merged-chr1-171285466-2	chr1	171285350	171285550	+	869.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013919, intron 3 of 12)	intron (NM_013919, intron 3 of 12)	2511.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	14.94	3.77	26.81	2.82	11.45	7.21	4.98	6.39	7.08	5.52	7.54	5.95
Merged-chr4-142063163-3	chr4	142063052	142063252	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-21146.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	11.31	9.56	11.98	6.03	13.09	23.83	23.58	48.45	31.47	4.52	25.12	16.6
Merged-chr4-126430481-3	chr4	126430374	126430574	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-932.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.65	11.07	14.26	9.25	10.64	32.3	11.29	15.34	23.8	23.1	14.57	8.46
Merged-chr5-45926149-3	chr5	45926049	45926249	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110478)	TTS (NR_110478)	6260.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	6.86	11.07	4.56	12.07	12.68	10.03	19.93	11.24	15.93	2.51	10.55	10.02
Merged-chr9-120037581-3	chr9	120037453	120037653	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13955.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	12.92	7.55	16.54	26.55	18.82	13.48	20.59	21.28	11.21	7.03	22.11	12.22
Merged-chr13-9750007-3	chr13	9749895	9750095	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	13815.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.65	8.3	9.13	5.63	15.55	27.91	24.58	22.79	23.8	39.67	23.62	16.6
Merged-chr6-29696132-3	chr6	29696020	29696220	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	1906.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	31.09	51.56	27.38	19.71	15.55	46.41	9.63	15.9	22.03	17.57	12.56	3.13
Merged-chr11-95749819-3	chr11	95749725	95749925	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201609, exon 1 of 5)	exon (NM_201609, exon 1 of 5)	758.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	24.63	10.31	30.23	16.49	13.09	15.99	6.64	20.02	20.26	6.53	11.56	12.84
Merged-chr10-41930117-1	chr10	41930017	41930217	+	869.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	RSINE1|SINE|B4	42678.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	2.42	4.02	2.85	4.83	4.91	8.78	16.61	12.76	4.72	6.53	4.52	6.27
Merged-chr8-4493937-3	chr8	4493828	4494028	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026058, intron 1 of 10)	intron (NM_026058, intron 1 of 10)	523.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	15.34	7.29	10.27	14.48	12.68	12.86	4.65	14.1	13.57	21.59	21.61	9.08
Merged-chr14-30550035-3	chr14	30549907	30550107	+	869.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	876.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	10.5	10.56	7.99	7.24	11.05	12.54	23.25	17.38	12.19	2.51	11.05	14.41
Merged-chr14-72983652-3	chr14	72983553	72983753	+	869.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41950.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	11.31	13.58	9.13	12.47	15.55	18.19	8.3	21.0	15.93	8.03	15.58	12.22
Merged-chrX-155511626-3	chrX	155511537	155511737	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	111690.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	14.54	10.82	7.99	18.5	24.96	12.54	28.23	32.94	11.6	14.56	24.62	15.35
Merged-chr11-22843065-3	chr11	22842975	22843175	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	16660.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	11.31	15.59	17.11	23.33	11.45	10.35	18.6	23.47	22.62	7.03	11.05	16.29
Merged-chr3-123507041-3	chr3	123506998	123507198	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008939)	TTS (NM_008939)	968.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	4.44	4.53	2.28	4.42	4.09	5.02	6.64	4.32	5.9	4.02	12.06	5.64
Merged-chr16-58524622-3	chr16	58524519	58524719	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357435)	promoter-TSS (NM_001357435)	-366.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	16.96	5.53	7.99	16.89	20.46	13.8	10.3	26.55	11.8	6.53	20.1	9.08
Merged-chr11-4220633-3	chr11	4220544	4220744	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028022, intron 4 of 8)	intron (NM_028022, intron 4 of 8)	2393.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	10.09	6.54	3.42	6.03	12.27	17.25	7.31	12.79	15.93	5.52	14.07	15.35
Merged-chr10-111471344-3	chr10	111471219	111471419	+	869.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1908.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.46	9.06	9.13	9.65	17.59	11.92	14.28	19.85	16.72	13.05	33.67	12.84
Merged-chr18-21640296-1	chr18	21640196	21640396	+	869.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081403, intron 1 of 7)	L1MB8|LINE|L1	-11269.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	2.42	3.77	2.28	4.02	4.5	1.88	8.64	6.64	0.0	0.0	1.0	0.63
Merged-chr11-86578450-2	chr11	86578335	86578535	+	869.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5723.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	9.29	8.8	2.28	8.04	6.14	10.35	9.97	9.84	5.7	8.03	8.54	8.14
Merged-chr2-167004868-5	chr2	167004725	167004925	+	869.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAG)n|Simple_repeat|Simple_repeat	-8526.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.25	3.27	3.42	2.82	2.05	4.08	1.99	2.94	5.51	4.02	2.51	7.21
Merged-chr3-37640954-3	chr3	37640851	37641051	+	869.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011896, intron 2 of 2)	CpG-9115	1004.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	29.07	21.13	22.25	34.59	20.86	21.64	10.3	22.68	7.67	4.52	10.55	9.4
Merged-chr9-89268989-3	chr9	89268896	89269096	+	869.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57612.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	6.86	10.31	13.12	10.46	28.23	26.97	21.59	26.64	14.75	9.04	19.09	6.58
Merged-chr3-88464604-3	chr3	88464511	88464711	+	869.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-3429.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	14.13	8.05	19.97	3.22	15.14	18.5	9.3	12.22	12.78	18.58	18.09	13.47
Merged-chr8-35549280-2	chr8	35549190	35549390	+	869.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38508.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	15.34	15.59	9.7	12.07	22.5	24.15	21.26	21.17	0.39	0.0	0.0	0.31
Merged-chr17-85189783-3	chr17	85189689	85189889	+	869.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	99089.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	15.34	10.31	9.7	11.26	11.45	16.31	6.98	10.4	23.8	9.54	16.58	11.59
Merged-chr13-91636999-3	chr13	91636909	91637109	+	869.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-104512.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	14.54	7.8	11.41	10.46	22.5	21.32	14.62	22.29	11.21	21.59	15.07	11.9
Merged-chr12-76676578-1	chr12	76676478	76676678	+	869.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013675, intron 1 of 35)	intron (NM_013675, intron 1 of 35)	33969.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	8.08	5.79	3.42	7.24	15.96	7.84	6.31	17.19	6.1	7.03	8.54	5.33
Merged-chr16-24361935-3	chr16	24361858	24362058	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31392.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	15.34	8.8	23.39	17.7	9.0	14.42	8.3	15.84	10.62	7.53	26.63	8.77
Merged-chr11-50227364-3	chr11	50227258	50227458	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2023.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	19.38	13.58	10.27	16.89	12.68	16.62	8.64	16.32	12.19	15.57	8.54	9.08
Merged-chr5-35689073-3	chr5	35688961	35689161	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9281.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	12.92	5.53	10.84	18.5	11.86	11.6	15.28	13.57	12.59	8.03	15.07	11.9
Merged-chr19-24967163-3	chr19	24967057	24967257	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5541.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	14.94	7.04	5.7	12.87	10.23	23.2	12.95	13.51	19.28	17.57	16.08	14.1
Merged-chr6-38342419-3	chr6	38342261	38342461	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12242.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	11.31	10.56	8.56	8.04	9.41	11.92	9.3	9.45	13.18	9.04	13.06	4.7
Merged-chr7-144991960-2	chr7	144991866	144992066	+	869.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-52041.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.48	3.77	5.7	4.42	7.36	15.37	5.31	10.96	24.19	22.59	18.09	10.02
Merged-chr11-50931619-3	chr11	50931503	50931703	+	869.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013744)	promoter-TSS (NM_013744)	32.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	10.5	7.8	7.42	10.86	21.27	17.25	15.61	20.86	11.01	19.58	15.58	12.53
Merged-chr12-84189262-3	chr12	84189165	84189365	+	869.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4750.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	12.92	12.07	11.98	5.23	18.0	23.52	9.3	7.82	27.14	16.57	13.57	8.77
Merged-chr7-28867814-3	chr7	28867705	28867905	+	869.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3419.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	9.69	11.07	11.41	14.08	6.95	19.44	12.95	6.28	11.01	17.07	14.07	10.96
Merged-chr2-130750698-3	chr2	130750604	130750804	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 20 of 36)	RMER10A|LTR|ERVL	-53185.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	17.36	5.79	5.13	12.07	10.64	4.39	9.97	7.49	16.52	7.03	24.12	5.01
Merged-chr1-144203115-3	chr1	144203011	144203211	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25739.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	10.09	9.31	20.54	32.18	15.55	8.15	9.97	26.5	12.0	6.53	14.07	19.11
Merged-chr3-87349896-3	chr3	87349804	87350004	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-7977.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	10.09	4.78	6.85	11.26	4.91	9.72	21.92	21.0	15.14	15.57	22.11	16.6
Merged-chr12-16900959-3	chr12	16900851	16901051	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	5973.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	8.88	7.04	16.54	7.24	10.64	19.44	14.95	16.79	24.19	17.57	19.09	10.65
Merged-chr8-3659059-3	chr8	3658969	3659169	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022984)	TTS (NM_022984)	3299.0	NM_022984	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	5.25	7.55	7.99	16.89	15.14	7.53	16.94	15.31	19.08	20.08	35.68	13.47
Merged-chr15-103165623-3	chr15	103165524	103165724	+	869.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2340.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	16.96	13.83	8.56	8.85	20.46	7.84	7.31	8.78	19.08	18.08	24.62	13.78
Merged-chr11-107675873-3	chr11	107675767	107675967	+	869.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38145.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	12.52	10.56	7.99	24.53	12.68	19.44	11.29	13.26	23.01	11.05	19.09	14.1
Merged-chr11-121082421-3	chr11	121082321	121082521	+	869.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1282.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	17.36	13.58	17.11	12.07	16.36	6.9	6.31	14.13	14.75	7.03	13.57	11.28
Merged-chr17-6001568-3	chr17	6001450	6001650	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357667, intron 4 of 24)	intron (NM_001357667, intron 4 of 24)	-6030.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	8.08	15.59	10.84	12.87	13.5	21.01	12.29	19.63	12.39	18.58	16.58	9.08
Merged-chrX-167131418-3	chrX	167131312	167131512	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61042.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	14.94	13.08	11.41	18.5	9.82	21.01	28.23	20.83	17.31	12.55	32.66	13.16
Merged-chr10-56808947-3	chr10	56808842	56809042	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	376961.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	15.34	9.31	33.66	22.52	12.68	9.41	12.95	20.55	15.93	16.57	15.58	14.1
Merged-chr7-67229090-3	chr7	67229003	67229203	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175215)	TTS (NM_175215)	6487.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	12.92	10.06	16.54	12.07	6.95	20.7	10.63	16.26	12.19	16.07	32.16	30.39
Merged-chr19-3324087-3	chr19	3324031	3324231	+	869.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 1 of 18)	CpG	830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	10.5	18.36	5.13	8.04	16.36	20.7	11.63	9.62	19.87	13.56	23.11	10.02
Merged-chr8-71296985-3	chr8	71296910	71297110	+	869.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	24296.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	13.73	7.04	23.96	9.65	31.5	16.93	10.96	30.9	22.62	15.06	13.06	11.59
Merged-chr2-166744673-3	chr2	166744573	166744773	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30841.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	12.11	7.55	7.99	8.45	17.59	15.99	9.63	14.44	20.46	18.08	9.55	20.68
Merged-chr16-20693684-2	chr16	20693597	20693797	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1360.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	13.73	12.07	7.99	3.62	17.18	15.68	7.64	5.38	16.52	21.09	16.58	16.29
Merged-chr5-3501313-3	chr5	3501205	3501405	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42528.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.88	4.53	6.85	3.62	9.82	15.99	5.98	9.53	14.16	18.08	11.56	11.9
Merged-chr3-133626818-3	chr3	133626676	133626876	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82386.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	10.09	10.56	10.84	8.85	16.77	27.28	10.3	8.19	9.05	11.05	10.05	15.66
Merged-chr8-109019727-3	chr8	109019615	109019815	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-55507.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	7.27	7.04	10.84	21.32	15.96	14.74	18.93	23.27	16.33	29.62	30.15	20.05
Merged-chr7-135710469-3	chr7	135710374	135710574	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 4 of 13)	intron (NM_001081117, intron 4 of 13)	5905.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	10.9	19.37	14.26	5.23	17.59	22.89	7.31	13.88	26.55	22.59	23.62	14.41
Merged-chr11-75535286-1	chr11	75535186	75535386	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	3174.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	2.02	1.26	1.71	2.41	2.45	4.08	0.33	3.28	1.57	2.01	5.02	1.57
Merged-chr2-121170015-1	chr2	121169915	121170115	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290819, exon 1 of 5)	exon (NM_001290819, exon 1 of 5)	1110.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	1.21	4.28	1.14	8.45	8.18	1.88	7.64	9.9	6.88	4.02	7.54	3.45
Merged-chr2-104595215-2	chr2	104595121	104595321	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037326, intron 1 of 1)	intron (NM_001037326, intron 1 of 1)	4737.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	14.13	8.55	9.7	5.23	6.95	11.6	4.32	12.42	8.26	13.05	10.55	7.21
Merged-chr7-99155476-1	chr7	99155376	99155576	+	869.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-14332.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.42	1.01	0.0	0.0	1.64	0.0	1.99	1.43	6.49	4.52	13.57	10.96
Merged-chr6-94536517-2	chr6	94536418	94536618	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 5 of 9)	intron (NM_026255, intron 5 of 9)	36204.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.85	2.52	7.99	3.62	5.73	7.21	10.96	16.71	7.08	4.02	27.13	12.53
Merged-chr15-59265777-3	chr15	59265699	59265899	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41149.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.63	4.02	13.12	8.45	22.91	16.62	26.24	29.89	5.7	7.03	21.61	10.34
Merged-chr7-120873099-2	chr7	120872994	120873194	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	21905.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	9.69	12.07	21.68	12.47	20.46	8.15	9.63	18.11	7.28	8.54	6.53	5.64
Merged-chr11-119917284-1	chr11	119917184	119917384	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085498, intron 6 of 7)	intron (NM_001085498, intron 6 of 7)	3474.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	2.83	3.27	7.99	4.83	11.05	5.96	6.64	13.96	3.34	3.01	6.53	5.64
Merged-chr6-108695504-1	chr6	108695404	108695604	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34570.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	10.09	3.77	5.7	2.41	18.0	8.15	3.99	8.92	7.87	3.01	5.53	2.19
Merged-chr3-19219557-1	chr3	19219457	19219657	+	869.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045575, exon 9 of 9)	non-coding (NR_045575, exon 9 of 9)	31262.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.65	2.26	2.85	11.26	3.27	2.2	1.33	3.36	11.41	4.52	17.08	5.01
Merged-chr2-167333627-1	chr2	167333527	167333727	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	15551.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.65	1.76	5.7	0.8	6.95	3.76	12.29	21.93	3.74	3.01	13.06	5.01
Merged-chr4-32160564-1	chr4	32160464	32160664	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	196457.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.63	0.75	4.56	2.01	3.68	9.41	12.62	6.31	4.72	0.5	5.02	6.27
Merged-chr4-66822681-3	chr4	66822594	66822794	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4857.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	13.73	7.29	13.12	23.33	20.46	13.48	15.94	24.03	11.01	2.51	16.08	7.83
Merged-chr19-32200258-2	chr19	32200141	32200341	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	10772.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	10.5	6.54	14.83	12.07	22.91	31.36	16.28	29.8	3.74	4.52	7.54	4.07
Merged-chr5-4583258-1	chr5	4583158	4583358	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174958.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.81	2.01	2.28	0.0	4.5	4.39	8.97	9.25	8.26	7.03	8.04	7.52
Merged-chr11-87427509-1	chr11	87427409	87427609	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-82.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	14.13	9.56	14.26	3.22	5.73	4.08	7.31	2.89	0.59	4.02	7.03	7.83
Merged-chr15-81210714-1	chr15	81210614	81210814	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19861.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	3.23	4.02	8.56	7.24	3.27	9.72	1.99	4.46	8.85	2.51	3.01	2.19
Merged-chr1-136249927-1	chr1	136249827	136250027	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10946.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	6.06	5.03	5.7	8.04	3.68	5.64	6.31	9.2	3.54	5.52	19.6	3.13
Merged-chr11-103967352-3	chr11	103967252	103967452	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007477, exon 1 of 5)	5' UTR (NM_007477, exon 1 of 5)	481.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	19.79	5.03	2.85	10.05	12.27	12.86	2.66	9.28	20.06	11.05	22.61	9.71
Merged-chr1-170576574-2	chr1	170576468	170576668	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	13281.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.81	5.53	6.85	8.85	18.41	10.35	1.99	9.53	15.93	12.05	4.02	11.59
Merged-chr11-32271357-1	chr11	32271257	32271457	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-3650.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	15.34	17.1	14.26	7.24	4.5	8.47	2.99	1.54	3.93	2.51	2.51	0.63
Merged-chr4-137836003-4	chr4	137835857	137836057	+	868.994019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26280.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.02	5.28	7.42	6.84	4.91	3.76	3.99	5.1	15.74	17.07	26.13	9.4
Merged-chr4-102720180-3	chr4	102720090	102720290	+	868.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-39945.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	15.75	7.8	16.54	23.73	19.64	30.1	21.26	27.31	13.57	9.04	20.1	9.4
Merged-chr3-86920724-5	chr3	86920593	86920793	+	868.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001195499, exon 1 of 18)	5' UTR (NM_001195499, exon 1 of 18)	191.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	14.94	15.85	15.97	19.31	19.23	22.89	15.94	29.78	9.64	7.03	7.54	7.83
Merged-chr14-76279217-2	chr14	76279118	76279318	+	868.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27756.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	3.23	4.53	1.14	7.24	6.14	10.03	5.98	14.19	13.96	13.56	16.58	8.77
Merged-chr2-155755925-2	chr2	155755825	155756025	+	868.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011171)	TTS (NM_011171)	4708.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	9.29	20.37	6.28	8.04	9.0	8.47	1.99	6.06	34.22	28.62	20.6	10.65
Merged-chr2-34784267-3	chr2	34784165	34784365	+	868.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	12175.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	23.42	24.65	4.56	2.01	15.14	47.98	3.32	5.52	24.0	26.11	17.08	9.08
Merged-chr7-79232258-3	chr7	79232169	79232369	+	868.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-40997.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	16.56	9.31	18.83	5.23	6.95	9.09	15.28	9.98	15.93	15.57	13.06	13.78
Merged-chr13-3895758-3	chr13	3895648	3895848	+	868.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2167.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	5.25	8.05	9.13	10.05	8.59	14.42	13.95	16.01	5.9	4.02	25.12	9.4
Merged-chr11-98933355-3	chr11	98933241	98933441	+	868.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4355.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	12.11	15.34	12.55	6.84	22.5	21.32	5.65	11.94	23.21	13.56	16.08	8.46
Merged-chr7-67372278-2	chr7	67372168	67372368	+	868.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	CpG	590.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	11.71	7.55	5.7	4.02	9.41	16.93	12.29	8.19	12.98	16.07	9.55	3.76
Merged-chr17-50528141-1	chr17	50528041	50528241	+	868.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	18594.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	8.48	3.02	9.7	5.23	11.45	12.54	8.3	9.56	7.87	7.53	4.02	2.82
Merged-chr18-67464916-3	chr18	67464844	67465044	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	95.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	8.48	3.27	5.13	15.69	11.86	6.27	9.3	10.07	12.59	11.05	12.06	5.01
Merged-chr11-106392028-3	chr11	106391948	106392148	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9267.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.65	4.78	7.42	10.46	17.18	12.54	2.66	3.36	21.05	1.51	21.61	17.23
Merged-chr8-48016665-3	chr8	48016529	48016729	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26078.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	11.71	12.07	12.55	8.85	15.14	18.19	9.97	12.31	11.8	8.54	14.07	4.7
Merged-chr4-15234781-3	chr4	15234689	15234889	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-31031.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	11.31	9.06	3.99	16.89	20.46	13.17	14.62	17.94	11.8	16.57	21.61	15.04
Merged-chr1-37479248-3	chr1	37479124	37479324	+	868.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1M4|LINE|L1	9381.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	10.5	13.83	17.68	16.09	9.82	15.99	11.29	11.55	18.88	24.6	16.08	6.58
Merged-chr2-139379398-3	chr2	139379298	139379498	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114515.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	2.83	2.77	15.97	9.65	9.0	1.88	12.62	16.49	13.18	13.05	20.6	12.22
Merged-chr10-45454321-3	chr10	45454225	45454425	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031772, intron 2 of 4)	intron (NM_001031772, intron 2 of 4)	15876.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	4.04	14.59	14.26	15.28	11.86	7.84	3.65	11.86	13.96	5.52	18.09	7.52
Merged-chr4-134779517-3	chr4	134779424	134779624	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11520.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.65	12.58	10.27	7.64	16.36	10.35	8.97	7.77	6.69	5.02	7.03	3.76
Merged-chr2-45245693-3	chr2	45245586	45245786	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-128244.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	25.04	27.17	16.54	12.87	18.82	38.57	7.64	15.08	18.88	20.08	10.55	9.71
Merged-chr3-27766245-3	chr3	27766141	27766341	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55789.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	8.08	11.32	20.54	11.66	13.91	12.23	13.95	20.92	17.9	22.59	26.13	8.77
Merged-chr19-41974125-5	chr19	41974032	41974232	+	868.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	7004.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	10.09	8.3	16.54	8.85	4.91	9.41	4.98	9.56	11.21	4.52	14.07	8.14
Merged-chr9-13526403-4	chr9	13526263	13526463	+	868.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93626.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.06	4.02	1.14	14.48	9.0	9.41	14.95	9.31	7.67	22.59	8.54	7.52
Merged-chr6-108832413-3	chr6	108832307	108832507	+	868.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	3766.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	8.08	6.79	13.12	4.83	22.91	15.99	12.29	19.46	17.31	15.06	25.63	7.21
Merged-chr10-120977958-3	chr10	120977851	120978051	+	868.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	1379.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	10.5	9.06	4.56	10.46	18.0	13.17	9.97	13.57	14.95	11.55	8.54	4.7
Merged-chr14-70100842-3	chr14	70100727	70100927	+	868.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	734.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	8.88	10.31	14.26	14.88	11.86	10.03	7.31	6.42	14.95	12.55	16.58	11.28
Merged-chr16-91347623-3	chr16	91347488	91347688	+	868.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25195.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.88	8.05	3.42	12.87	8.59	7.53	7.97	12.45	13.96	13.05	12.56	10.65
Merged-chr9-46168947-2	chr9	46168857	46169057	+	868.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-59673.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	16.15	16.1	6.85	9.25	3.27	10.66	3.32	1.35	25.77	17.07	23.62	8.14
Merged-chr12-100170490-3	chr12	100170382	100170582	+	868.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10829.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	9.69	9.06	15.97	8.04	15.14	10.66	12.62	14.19	17.7	14.06	28.64	12.84
Merged-chr7-24661772-3	chr7	24661665	24661865	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030681, intron 1 of 1)	intron (NR_030681, intron 1 of 1)	471.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	7.67	13.08	18.25	13.67	25.36	19.44	17.61	18.79	18.1	11.05	14.57	13.47
Merged-chr8-105332770-3	chr8	105332675	105332875	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 13 of 21)	intron (NM_177699, intron 13 of 21)	6411.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	5.65	5.28	7.42	9.65	5.32	11.92	17.27	21.06	18.1	4.02	15.58	5.64
Merged-chr12-12265164-1	chr12	12265064	12265264	+	868.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	3025.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.85	3.52	1.14	0.8	1.64	7.53	2.66	2.05	9.83	9.04	5.02	2.82
Merged-chr3-136750133-1	chr3	136750033	136750233	+	868.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	80067.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.85	1.51	5.7	4.42	8.59	8.78	4.65	8.13	5.11	10.04	10.05	4.07
Merged-chr2-142764711-3	chr2	142764598	142764798	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	136766.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	14.54	12.07	15.97	12.87	17.18	7.84	13.95	27.42	8.06	7.53	24.12	10.96
Merged-chr14-45218074-3	chr14	45217986	45218186	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 2 of 20)	intron (NM_001310534, intron 2 of 20)	1339.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	10.9	14.84	16.54	20.91	8.18	13.48	9.3	20.44	26.75	12.05	14.57	11.59
Merged-chr5-5368952-3	chr5	5368840	5369040	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	11311.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.88	16.6	7.99	13.27	15.14	15.05	14.62	16.6	21.44	14.06	20.6	10.96
Merged-chr3-9946680-3	chr3	9946572	9946772	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65913.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	10.09	5.53	23.96	17.7	14.73	15.99	16.61	29.47	20.26	15.57	19.09	10.02
Merged-chr11-96967760-3	chr11	96967668	96967868	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9920.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	8.08	9.81	13.69	9.65	19.23	12.54	8.3	16.65	17.11	21.09	26.63	13.78
Merged-chr4-12084172-3	chr4	12084087	12084287	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	3770.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	14.13	8.3	8.56	15.28	9.0	8.15	2.99	6.7	19.67	11.55	16.08	3.45
Merged-chr4-148085359-2	chr4	148085285	148085485	+	868.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2679.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.04	4.78	7.99	6.03	4.91	9.72	15.28	16.46	11.41	7.03	11.56	6.89
Merged-chr14-63121980-2	chr14	63121881	63122081	+	868.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-481.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.65	4.78	7.99	4.02	16.36	6.27	4.98	10.37	14.75	11.05	14.57	6.89
Merged-chr19-6895768-3	chr19	6895653	6895853	+	868.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-13945.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	20.59	9.81	25.1	10.46	20.05	20.07	8.3	5.44	22.42	16.57	24.12	11.59
Merged-chr3-149395279-3	chr3	149395180	149395380	+	868.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120543.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	15.34	10.82	2.28	15.28	11.05	8.15	8.3	16.23	21.05	14.06	18.59	13.47
Merged-chr13-64307552-3	chr13	64307391	64307591	+	868.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025370, intron 4 of 5)	MTE-int|LTR|ERVL-MaLR	5219.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	6.46	10.56	19.4	11.26	24.14	20.07	25.58	37.51	6.88	6.53	9.55	3.13
Merged-chr11-23987942-2	chr11	23987872	23988072	+	868.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90084.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	3.63	5.53	5.13	11.66	8.59	12.54	9.63	20.24	21.05	8.54	13.57	15.04
Merged-chr2-30657853-3	chr2	30657762	30657962	+	868.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_136917)	TTS (NR_136917)	20149.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	10.09	8.8	5.7	4.83	22.09	6.9	5.31	11.1	12.0	18.08	13.06	8.14
Merged-chr10-19596826-2	chr10	19596727	19596927	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010511, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	4878.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.63	3.02	6.85	6.84	13.09	11.6	7.97	13.65	14.75	13.05	12.06	10.34
Merged-chr7-102032682-1	chr7	102032582	102032782	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029211, intron 4 of 8)	MTC|LTR|ERVL-MaLR	-14527.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.27	4.53	2.85	4.02	11.05	4.08	5.31	8.66	9.24	4.02	9.04	4.39
Merged-chr12-79983464-3	chr12	79983386	79983586	+	868.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47222.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	9.29	9.56	17.68	19.71	11.45	16.93	18.93	20.64	10.42	5.02	12.56	8.14
Merged-chr5-124526755-1	chr5	124526655	124526855	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021430, intron 1 of 6)	L2c|LINE|L2	4636.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	6.86	5.03	7.99	4.02	2.86	5.33	9.3	9.25	2.95	2.51	7.54	3.13
Merged-chr17-24780999-2	chr17	24780904	24781104	+	868.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23378.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	18.17	8.8	19.4	10.46	27.82	12.23	28.57	21.73	1.77	3.01	4.52	3.45
Merged-chr16-78232402-2	chr16	78232298	78232498	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23056.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.81	0.5	0.57	0.8	21.68	32.93	26.57	18.03	26.95	11.05	21.1	9.08
Merged-chr10-89584860-1	chr10	89584760	89584960	+	868.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310710, intron 7 of 9)	intron (NM_001310710, intron 7 of 9)	14955.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.0	0.75	6.85	2.41	0.41	0.31	0.66	1.09	21.05	11.55	33.67	6.27
Merged-chr5-112995736-3	chr5	112995636	112995836	+	868.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	19802.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	25.84	21.38	31.38	55.1	19.64	17.56	29.23	39.08	9.05	9.04	18.59	6.58
Merged-chr17-64398869-1	chr17	64398769	64398969	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41937.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	6.86	5.03	10.27	3.62	7.36	12.23	5.31	8.92	4.52	6.53	11.56	1.25
Merged-chr4-116076573-4	chr4	116076506	116076706	+	868.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153521, intron 1 of 9)	CpG	1337.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	7.27	5.28	10.84	17.7	8.18	10.35	14.95	4.12	7.28	17.57	15.07	18.17
Merged-chr6-145193628-3	chr6	145193524	145193724	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177222, intron 7 of 15)	intron (NM_177222, intron 7 of 15)	17346.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	11.71	9.31	9.13	13.27	18.0	14.42	10.63	16.46	14.16	6.53	22.11	10.65
Merged-chr5-107763840-3	chr5	107763738	107763938	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-38033.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	10.9	13.33	41.64	20.91	16.77	18.5	9.63	15.9	23.01	10.54	18.09	16.6
Merged-chr18-74773402-3	chr18	74773291	74773491	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5064.0	NR_028560	100217466.0		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	9.69	9.56	12.55	5.63	16.36	18.81	14.62	14.19	7.47	6.53	21.61	8.77
Merged-chr2-13576042-3	chr2	13575952	13576152	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	1741.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	16.15	6.29	10.84	11.66	18.41	12.86	18.6	16.23	23.8	18.08	19.09	14.41
Merged-chr2-72848612-3	chr2	72848507	72848707	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34890.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	2.42	10.82	20.54	8.45	12.27	12.23	16.61	28.37	19.47	13.56	18.59	6.58
Merged-chr6-124847466-3	chr6	124847362	124847562	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	-7187.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	8.48	12.58	13.12	16.09	25.36	20.07	5.65	10.29	24.59	21.09	14.57	13.47
Merged-chr4-130284054-3	chr4	130283942	130284142	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-8456.0	NM_172702	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	9.69	9.56	6.85	12.47	8.18	18.81	12.29	7.43	20.06	23.6	22.61	12.22
Merged-chr10-83922795-2	chr10	83922693	83922893	+	868.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177904.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.63	6.54	7.42	15.28	6.95	10.66	5.31	11.21	16.52	12.05	24.62	10.65
Merged-chr5-105294024-4	chr5	105293898	105294098	+	868.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-299.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	8.08	15.34	10.84	6.84	10.23	10.35	6.98	3.7	12.78	10.04	11.56	6.58
Merged-chr11-108079636-3	chr11	108079530	108079730	+	868.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	82782.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	10.09	11.57	13.69	13.67	12.68	16.62	12.29	11.8	25.18	27.62	15.07	14.72
Merged-chr3-101806353-3	chr3	101806253	101806453	+	868.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29870.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	10.9	7.55	6.28	9.65	13.5	12.23	15.94	11.86	13.18	7.53	22.61	10.96
Merged-chr11-40694454-3	chr11	40694355	40694555	+	868.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	748.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	6.86	14.09	6.85	18.9	11.05	13.48	4.65	19.32	13.96	9.54	17.08	11.9
Merged-chr14-49065571-3	chr14	49065480	49065680	+	868.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-969.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	10.09	11.32	1.71	10.86	5.32	15.68	13.62	11.55	12.0	12.05	11.56	10.65
Merged-chr8-3926815-2	chr8	3926705	3926905	+	868.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026972)	promoter-TSS (NM_026972)	36.0	NM_001037800	69165.0	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	14.13	9.81	13.69	8.85	15.55	12.86	10.96	21.53	4.33	1.51	7.03	2.19
Merged-chr11-63078187-2	chr11	63078091	63078291	+	868.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027660, intron 4 of 7)	intron (NM_027660, intron 4 of 7)	16532.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	6.06	1.76	1.14	6.44	9.41	8.47	19.27	15.7	4.92	4.52	18.59	10.34
Merged-chr5-103725941-3	chr5	103725818	103726018	+	868.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28244.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	12.11	12.58	23.39	8.45	7.77	9.41	5.31	10.12	17.31	10.54	19.6	12.22
Merged-chr5-66363453-2	chr5	66363354	66363554	+	868.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25789.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.63	7.55	4.56	6.84	10.23	3.14	2.99	8.07	14.75	12.05	18.09	6.89
Merged-chr12-32724653-3	chr12	32724547	32724747	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95688.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	7.67	6.79	12.55	14.08	26.59	37.0	24.58	30.87	28.32	15.57	24.62	22.56
Merged-chr3-132176979-1	chr3	132176879	132177079	+	868.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020265, intron 3 of 3)	intron (NM_020265, intron 3 of 3)	91687.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.62	3.02	2.28	0.8	9.0	8.47	2.33	13.49	7.67	4.52	4.02	4.7
Merged-chr8-72135786-3	chr8	72135703	72135903	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001491, intron 1 of 7)	CpG	511.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	15.34	11.57	10.27	6.84	10.23	15.68	8.97	9.56	21.64	16.57	17.59	10.02
Merged-chr4-86427548-3	chr4	86427456	86427656	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130747.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	6.46	6.04	8.56	16.89	17.59	13.48	20.26	20.16	20.65	22.59	23.11	16.6
Merged-chr4-55925108-1	chr4	55925008	55925208	+	868.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-392633.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.65	5.79	9.13	14.08	16.36	3.14	7.97	15.93	6.88	1.51	8.54	8.46
Merged-chr19-56256964-3	chr19	56256850	56257050	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30962.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	11.71	11.07	23.96	12.87	9.0	10.03	6.98	9.93	10.82	5.02	7.03	11.28
Merged-chr11-59191114-3	chr11	59191007	59191207	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008193, intron 1 of 7)	intron (NM_008193, intron 1 of 7)	845.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	14.13	13.58	15.97	8.45	11.86	15.68	8.64	10.18	12.98	17.57	14.07	9.71
Merged-chr9-41122902-3	chr9	41122797	41122997	+	868.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	MIR3|SINE|MIR	35165.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	14.13	16.1	6.28	16.89	14.32	13.17	12.95	13.57	8.85	17.07	17.59	14.72
Merged-chr6-127151054-3	chr6	127150953	127151153	+	868.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-5.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	14.94	22.13	11.41	14.48	16.77	9.41	4.32	4.93	17.51	8.03	9.04	7.21
Merged-chr7-19270784-3	chr7	19270743	19270943	+	868.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1011.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	8.48	13.58	30.8	8.04	9.41	10.35	13.95	3.7	16.33	17.07	21.1	13.47
Merged-chr3-97971343-1	chr3	97971243	97971443	+	868.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41170.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	5.25	4.28	0.0	2.82	13.91	4.08	7.31	8.05	5.51	6.03	6.03	5.01
Merged-chr3-108061556-3	chr3	108061464	108061664	+	868.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16705.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	8.08	7.29	15.4	4.02	4.91	6.27	8.64	6.93	12.0	15.06	10.05	10.02
Merged-chr15-8433586-2	chr15	8433575	8433775	+	868.2333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	10788.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	1.21	2.52	1.71	1.61	4.5	4.7	9.97	2.86	6.29	3.01	1.51	6.89
Merged-chr3-88488542-3	chr3	88488434	88488634	+	868.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	4778.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	8.88	12.32	5.7	6.03	11.86	8.78	8.97	5.64	17.7	25.61	8.04	10.02
Merged-chr4-114970937-3	chr4	114970837	114971037	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	16291.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	2.42	10.06	13.12	10.05	22.91	9.72	20.93	18.48	17.7	15.57	17.59	14.1
Merged-chr17-46298744-3	chr17	46298648	46298848	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286013, intron 2 of 5)	intron (NM_001286013, intron 2 of 5)	820.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	10.9	7.29	7.99	6.84	13.5	15.99	5.31	5.69	17.11	15.57	20.1	13.16
Merged-chrX-142737958-3	chrX	142737847	142738047	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	-1053.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	12.52	6.04	14.83	12.87	22.5	14.11	13.62	22.49	7.67	5.52	15.07	11.9
Merged-chr9-42306534-3	chr9	42306443	42306643	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42243.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	14.54	12.58	10.27	8.85	22.09	15.68	10.96	9.9	24.39	13.05	34.67	26.63
Merged-chr8-103941082-3	chr8	103940979	103941179	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160546.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	8.88	0.5	11.41	8.85	25.36	53.93	28.9	44.36	29.11	21.09	40.7	16.29
Merged-chr12-40220448-3	chr12	40220367	40220567	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	RSINE1|SINE|B4	2344.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	11.31	3.77	11.98	21.32	9.0	10.03	13.62	15.25	17.11	18.58	20.6	8.77
Merged-chr6-5589829-3	chr6	5589721	5589921	+	868.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93543.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	14.13	16.6	11.41	20.91	22.5	12.86	6.64	21.5	23.21	21.09	16.08	16.6
Merged-chr7-29853614-3	chr7	29853496	29853696	+	868.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173738)	promoter-TSS (NM_173738)	52.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	9.69	8.8	10.27	11.66	15.96	18.81	15.94	11.3	11.6	15.57	21.61	12.53
Merged-chr14-20479945-3	chr14	20479833	20480033	+	868.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009674, exon 1 of 13)	5' UTR (NM_009674, exon 1 of 13)	200.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	13.73	14.84	6.85	12.87	13.91	18.81	8.64	14.36	8.65	16.57	17.08	12.84
Merged-chr6-97445359-3	chr6	97445269	97445469	+	868.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	13917.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.86	7.8	22.25	9.25	11.45	12.54	12.29	22.29	17.7	23.6	25.12	14.41
Merged-chr3-51358254-3	chr3	51358134	51358334	+	868.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17590.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	10.9	8.3	7.42	4.02	10.64	11.6	13.95	4.91	16.72	6.03	10.55	10.02
Merged-chr2-167887946-3	chr2	167887816	167888016	+	868.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44411.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.88	8.8	13.12	14.48	6.14	9.09	16.94	9.95	12.0	21.09	6.03	6.58
Merged-chr17-66076349-2	chr17	66076277	66076477	+	868.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025572, intron 1 of 12)	CpG	669.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	4.04	4.02	6.28	8.45	18.0	8.78	15.61	4.91	11.01	6.03	8.54	8.14
Merged-chr5-3341586-6	chr5	3341456	3341656	+	868.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2337.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	8.08	3.02	6.28	3.62	6.55	12.86	7.31	9.7	13.57	17.07	10.05	11.28
Merged-chr16-10979645-3	chr16	10979501	10979701	+	868.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	MLT-int|LTR|ERVL-MaLR	13520.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	13.73	3.52	15.4	20.51	10.64	8.78	12.29	8.24	7.28	6.53	5.53	6.27
Merged-chr12-105684064-3	chr12	105683963	105684163	+	868.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029654, intron 1 of 41)	intron (NM_029654, intron 1 of 41)	1178.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	14.54	11.32	9.13	7.24	16.36	19.13	4.32	9.87	16.33	10.54	12.06	5.33
Merged-chr11-117175128-2	chr11	117175027	117175227	+	868.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24534.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	8.08	3.27	6.85	0.8	11.86	9.09	11.29	7.43	10.82	16.07	17.08	8.14
Merged-chr7-75609674-2	chr7	75609579	75609779	+	868.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154145.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	16.15	9.06	9.7	9.65	13.91	8.15	10.63	9.67	7.67	4.52	7.54	3.76
Merged-chr17-34879704-3	chr17	34879599	34879799	+	868.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013484, intron 3 of 17)	intron (NM_013484, intron 3 of 17)	2401.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	12.52	16.35	6.85	12.07	13.09	14.74	3.99	12.22	29.5	13.05	14.57	4.07
Merged-chr7-73422622-3	chr7	73422519	73422719	+	868.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46845.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	11.31	8.8	6.28	12.47	10.23	15.37	5.98	9.79	12.59	15.06	17.59	4.7
Merged-chr6-49267114-3	chr6	49267014	49267214	+	868.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3062.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	15.34	20.88	18.25	19.31	13.09	5.64	8.3	9.14	19.47	14.56	11.56	13.78
Merged-chrX-74014808-3	chrX	74014711	74014911	+	868.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008363, exon 14 of 14)	3' UTR (NM_008363, exon 14 of 14)	8787.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	10.09	11.32	19.97	14.88	11.86	11.6	9.63	17.07	20.06	9.54	15.07	12.84
Merged-chr7-45700892-3	chr7	45700778	45700978	+	868.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009800, intron 2 of 8)	intron (NM_009800, intron 2 of 8)	911.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	12.92	11.32	11.98	8.45	13.09	12.23	7.97	10.96	15.93	7.03	21.1	11.9
Merged-chr13-113035105-3	chr13	113035011	113035211	+	868.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281487)	promoter-TSS (NM_001281487)	-268.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	26.25	14.59	11.41	23.33	14.32	14.42	8.97	8.66	16.13	6.03	24.12	8.77
Merged-chr15-100406280-1	chr15	100406180	100406380	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146161, exon 6 of 16)	exon (NM_001146161, exon 6 of 16)	16775.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.63	3.77	6.28	0.8	8.18	12.86	8.3	9.67	5.51	3.01	8.54	2.19
Merged-chr2-180041784-2	chr2	180041690	180041890	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178750)	promoter-TSS (NM_178750)	674.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	10.5	9.06	5.13	8.45	15.96	6.9	7.64	12.93	10.23	8.54	8.04	11.59
Merged-chr13-97567835-3	chr13	97567708	97567908	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	7808.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	8.88	6.79	7.42	15.69	17.59	21.32	9.63	20.44	20.65	22.59	21.1	8.14
Merged-chr18-42009875-1	chr18	42009775	42009975	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-10826.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	6.06	2.77	1.71	2.01	6.95	5.96	5.65	11.02	3.74	3.51	8.54	5.64
Merged-chrX-119927163-1	chrX	119927063	119927263	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053114)	promoter-TSS (NM_053114)	-33.0	NM_053114	93728.0	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	4.04	0.0	0.0	4.02	2.45	4.08	6.64	10.79	0.2	0.0	0.0	2.19
Merged-chr2-150787445-2	chr2	150787341	150787541	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	645.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	3.63	3.52	2.28	4.02	5.32	7.53	8.3	8.92	9.83	7.53	11.56	6.89
Merged-chrX-169993710-1	chrX	169993610	169993810	+	868.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14793.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	5.65	3.52	0.57	2.82	0.0	0.0	0.0	0.0	9.64	4.02	3.52	9.08
Merged-chr17-10740341-3	chr17	10740233	10740433	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	99858.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	7.67	4.53	15.4	9.65	19.23	27.59	22.59	34.23	33.04	22.59	42.71	12.53
Merged-chr10-68434204-1	chr10	68434104	68434304	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028491, intron 7 of 7)	intron (NM_028491, intron 7 of 7)	107671.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	1.76	2.28	7.24	4.91	5.02	16.94	7.85	4.13	0.5	4.02	0.63
Merged-chr12-118759732-1	chr12	118759632	118759832	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Plat_L3|LINE|CR1	-86597.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	6.46	4.78	4.56	11.26	4.5	4.08	7.64	10.32	8.65	4.02	8.04	10.02
Merged-chr3-129612795-3	chr3	129612695	129612895	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130450, intron 3 of 4)	intron (NM_130450, intron 3 of 4)	-80407.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	17.36	12.07	13.12	24.53	29.46	31.67	23.58	37.68	8.06	14.06	10.05	10.02
Merged-chr7-43604687-2	chr7	43604570	43604770	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-2499.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	6.06	1.51	11.41	5.63	15.14	3.45	5.65	8.1	12.0	9.04	13.06	4.7
Merged-chr5-100466773-1	chr5	100466673	100466873	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001115010, intron 4 of 12)	intron (NM_001115010, intron 4 of 12)	31800.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	2.42	1.01	2.28	0.4	2.05	7.53	2.66	8.89	6.1	3.51	4.02	1.25
Merged-chr7-88319656-3	chr7	88319566	88319766	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41581.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.48	8.05	1.14	5.63	15.96	8.78	6.98	10.68	17.31	16.57	20.1	5.33
Merged-chr13-80935352-1	chr13	80935252	80935452	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5051.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	7.27	2.26	2.28	0.4	7.77	8.78	9.63	7.35	4.13	7.03	11.56	5.64
Merged-chr10-117373277-1	chr10	117373177	117373377	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	B2_Mm2|SINE|B2	3696.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	9.29	7.29	7.42	6.44	0.82	2.82	3.99	1.74	3.74	9.54	6.03	7.83
Merged-chr2-84355468-1	chr2	84355368	84355568	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018782, intron 9 of 15)	MTB_Mm|LTR|ERVL-MaLR	69798.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.23	2.52	2.28	4.02	4.5	4.08	7.31	8.44	6.69	3.01	16.08	5.95
Merged-chr19-34206700-1	chr19	34206600	34206800	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10808.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	6.06	5.28	6.85	7.24	5.73	3.76	8.64	9.22	10.62	4.02	5.02	2.82
Merged-chr19-4865282-1	chr19	4865182	4865382	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013456, intron 12 of 20)	intron (NM_013456, intron 12 of 20)	10153.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	5.65	1.76	0.0	1.21	8.59	7.21	3.65	6.5	5.11	1.0	2.01	1.57
Merged-chr6-135333904-1	chr6	135333804	135334004	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23520.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	11.31	2.26	0.0	4.02	1.64	5.02	8.97	6.56	0.79	0.0	0.0	0.0
Merged-chr13-8645881-1	chr13	8645781	8645981	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225163.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	2.52	1.14	0.0	7.36	4.7	8.64	15.76	8.65	13.56	3.52	2.82
Merged-chr8-47691807-1	chr8	47691707	47691907	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-16648.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	4.85	4.02	10.27	1.21	7.36	6.27	9.97	6.81	6.49	5.02	7.03	10.96
Merged-chr8-46828944-1	chr8	46828844	46829044	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	89199.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.81	2.01	4.56	4.02	8.18	2.51	6.64	8.97	4.52	6.03	12.56	5.64
Merged-chr15-39907267-1	chr15	39907167	39907367	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	36727.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	2.83	0.5	0.0	3.62	4.91	11.6	8.97	8.02	4.72	2.51	2.51	4.7
Merged-chr7-31168580-1	chr7	31168480	31168680	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046062, intron 3 of 3)	intron (NR_046062, intron 3 of 3)	6222.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.85	1.76	3.42	2.41	8.18	7.21	12.29	11.94	5.31	8.54	6.53	3.13
Merged-chr12-26366152-1	chr12	26366052	26366252	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130981, intron 3 of 4)	intron (NR_130981, intron 3 of 4)	19442.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	1.62	0.5	5.7	1.21	8.18	10.03	7.97	9.08	2.56	1.51	1.0	3.76
Merged-chr2-148454313-1	chr2	148454213	148454413	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10778.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	2.02	3.02	9.13	4.02	8.18	2.51	3.32	13.79	3.74	3.01	13.57	4.07
Merged-chr3-95667198-1	chr3	95667098	95667298	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	8477.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	9.69	3.02	2.85	4.02	11.05	13.48	2.66	1.82	2.56	5.02	3.01	3.76
Merged-chr15-53216574-1	chr15	53216474	53216674	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	129609.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.63	1.26	2.28	4.02	4.5	10.35	11.96	10.82	4.92	8.03	7.03	4.07
Merged-chr2-168005829-1	chr2	168005729	168005929	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080708, intron 2 of 21)	MIR3|SINE|MIR	4764.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	4.85	3.02	6.85	8.04	5.32	5.64	9.97	14.86	3.74	3.01	4.52	2.51
Merged-chr17-21579695-2	chr17	21579605	21579805	+	867.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357347, intron 4 of 6)	intron (NM_001357347, intron 4 of 6)	12727.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	5.25	7.29	3.42	7.64	17.59	7.84	9.3	13.46	11.8	8.54	26.13	13.78
Merged-chr14-31434019-2	chr14	31433910	31434110	+	867.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2090.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.23	6.79	5.7	16.09	14.73	19.44	19.93	29.07	10.23	8.03	34.17	15.66
Merged-chr13-24323584-3	chr13	24323478	24323678	+	867.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3826.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	15.75	15.09	10.27	15.28	18.0	13.8	9.3	17.44	15.54	9.54	12.56	16.6
Merged-chr11-32342946-3	chr11	32342844	32343044	+	867.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4867.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	23.02	21.13	25.67	24.13	4.5	14.11	4.65	6.95	16.92	16.57	13.57	14.1
Merged-chr2-32881942-2	chr2	32881838	32882038	+	867.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5804.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	3.23	4.02	10.84	2.41	18.0	12.54	12.62	18.0	14.36	6.03	9.55	7.83
Merged-chr10-81191526-3	chr10	81191448	81191648	+	867.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190473, intron 6 of 8)	MTC|LTR|ERVL-MaLR	-3143.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	10.09	9.31	13.12	14.88	9.82	15.05	4.98	17.69	16.92	12.05	13.57	8.46
Merged-chr13-9457189-3	chr13	9457075	9457275	+	867.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	ORR1F|LTR|ERVL-MaLR	180650.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	15.34	9.31	19.4	15.69	19.64	11.92	17.61	22.6	12.98	12.05	13.57	19.42
Merged-chr3-144137696-2	chr3	144137612	144137812	+	867.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64620.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.85	11.57	13.12	2.41	0.82	4.08	4.98	0.36	14.95	10.04	12.56	10.02
Merged-chr4-150625561-3	chr4	150625460	150625660	+	867.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26614.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	13.73	10.82	9.13	8.85	13.5	21.01	8.3	10.04	17.7	13.05	22.61	12.22
Merged-chr2-58923295-3	chr2	58923196	58923396	+	867.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	RMER19C|LTR|ERVK	168112.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	9.29	7.8	12.55	16.49	36.41	20.07	19.27	14.78	31.27	16.07	16.58	21.62
Merged-chr4-126440798-2	chr4	126440683	126440883	+	867.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153403, intron 16 of 18)	MIRb|SINE|MIR	-11241.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.44	4.02	1.14	4.83	9.0	7.84	7.64	13.26	17.7	9.54	14.07	6.27
Merged-chr9-22478347-1	chr9	22478247	22478447	+	867.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	2632.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	8.08	9.81	4.56	8.04	11.05	10.66	11.96	13.77	10.62	2.51	6.03	4.07
Merged-chr16-24603559-3	chr16	24603454	24603654	+	867.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	74240.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	10.9	11.82	25.67	14.08	19.64	14.11	8.64	16.57	16.33	22.59	11.56	8.14
Merged-chr1-79602055-1	chr1	79601955	79602155	+	867.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	69917.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	8.48	12.32	25.1	10.46	2.45	2.82	4.32	3.36	0.0	0.0	0.0	0.63
Merged-chr6-125418959-3	chr6	125418862	125419062	+	867.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38458.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	14.94	8.8	6.85	8.04	17.59	17.56	8.64	9.95	16.52	14.06	10.05	9.08
Merged-chr11-34427391-3	chr11	34427282	34427482	+	867.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 27 of 51)	intron (NM_033374, intron 27 of 51)	112560.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	8.48	8.55	21.11	20.51	22.5	10.03	28.57	20.27	29.31	12.05	34.17	14.1
Merged-chr9-7176997-3	chr9	7176873	7177073	+	867.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029851)	promoter-TSS (NM_029851)	73.0	NM_029851	110350.0	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	8.48	9.56	9.7	6.84	11.05	11.29	18.6	12.36	22.62	22.59	22.11	16.29
Merged-chr3-142295063-2	chr3	142294956	142295156	+	867.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96794.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	7.27	6.79	8.56	8.04	11.05	16.93	5.98	18.17	17.31	13.56	21.61	7.83
Merged-chr11-94413230-3	chr11	94413123	94413323	+	867.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.27	8.05	13.69	17.7	32.32	16.31	29.9	37.09	17.9	5.52	21.1	10.65
Merged-chr15-5872263-3	chr15	5872172	5872372	+	867.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172432.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	7.67	7.55	21.68	13.27	21.68	13.48	11.63	24.28	19.87	13.56	35.68	11.59
Merged-chr16-33755537-3	chr16	33755438	33755638	+	867.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-38499.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.46	12.32	5.13	7.24	18.0	7.84	10.96	18.06	10.62	21.09	16.08	15.35
Merged-chr9-58280689-3	chr9	58280576	58280776	+	867.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	27512.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	9.69	11.57	10.27	9.25	15.55	18.19	5.31	9.14	29.11	19.58	17.59	17.54
Merged-chr9-90257553-3	chr9	90257411	90257611	+	867.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	13258.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	9.29	11.32	9.13	9.25	9.41	8.47	17.61	17.13	12.0	11.55	16.58	6.27
Merged-chr5-3300920-3	chr5	3300825	3301025	+	867.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42968.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	8.08	7.55	6.28	14.48	22.09	29.48	24.25	49.21	23.21	26.11	23.11	21.62
Merged-chr10-77664275-1	chr10	77664175	77664375	+	867.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-22294.0	NM_001287074	252974.0	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	1.21	4.53	3.99	2.41	13.09	8.15	8.97	10.46	2.36	4.52	6.53	3.45
Merged-chr10-62190942-1	chr10	62190842	62191042	+	867.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	3285.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	4.44	3.02	7.42	6.44	9.82	4.7	8.64	15.76	1.97	4.52	7.54	4.07
Merged-chr14-120479623-3	chr14	120479504	120479704	+	867.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1143.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	11.71	11.32	9.13	13.27	22.91	22.58	10.3	19.15	15.34	16.07	15.07	8.46
Merged-chr3-149110308-1	chr3	149110208	149110408	+	867.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-155673.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.04	2.52	10.27	6.44	7.36	9.41	13.95	7.6	1.97	3.51	4.52	0.63
Merged-chr7-45098987-2	chr7	45098891	45099091	+	867.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357117, intron 4 of 6)	B3|SINE|B2	4831.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	17.36	13.33	11.98	8.85	26.18	16.93	12.62	15.03	7.08	4.02	17.08	5.64
Merged-chr3-89160213-3	chr3	89160125	89160325	+	867.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008227)	promoter-TSS (NM_008227)	-68.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	16.56	6.79	4.56	11.26	15.55	14.42	5.31	12.17	21.64	20.08	18.09	10.65
Merged-chr11-62539194-3	chr11	62539121	62539321	+	867.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028448)	promoter-TSS (NM_028448)	40.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	8.88	9.06	13.12	10.05	6.14	14.74	8.64	14.8	15.34	4.02	17.59	8.46
Merged-chr16-4464894-3	chr16	4464766	4464966	+	867.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44368.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	12.52	12.32	13.12	17.29	17.18	9.09	7.97	19.12	13.37	8.03	14.57	17.86
Merged-chr16-57483001-3	chr16	57482918	57483118	+	867.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66224.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	10.09	6.04	7.99	3.22	22.5	23.2	16.28	12.08	23.41	18.08	18.59	14.1
Merged-chr17-27910865-3	chr17	27910786	27910986	+	867.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	B4A|SINE|B4	1580.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	22.21	6.54	2.85	6.44	13.5	20.07	6.31	9.36	14.16	13.56	23.11	10.02
Merged-chr1-165701055-3	chr1	165700954	165701154	+	867.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7040.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	11.31	9.31	9.13	4.83	10.64	19.44	7.97	7.51	29.5	18.08	13.06	6.58
Merged-chr5-62677549-2	chr5	62677441	62677641	+	867.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 12 of 32)	intron (NM_178407, intron 12 of 32)	88636.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.04	4.53	3.99	5.63	18.0	19.44	28.9	35.38	12.59	10.54	15.07	10.02
Merged-chr16-9132316-3	chr16	9132220	9132420	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	302220.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	14.13	4.53	9.13	10.05	14.73	29.48	15.94	24.39	22.03	32.13	20.6	20.36
Merged-chr2-167786091-3	chr2	167786002	167786202	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94925.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.06	8.3	13.69	12.47	23.32	30.42	11.29	17.47	6.29	6.53	15.58	15.66
Merged-chr12-35303344-3	chr12	35303255	35303455	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108458.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	16.96	12.83	32.52	20.51	12.68	8.15	8.64	17.13	15.54	13.56	19.09	13.78
Merged-chr13-34792787-3	chr13	34792686	34792886	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53144.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	10.09	10.56	5.7	12.07	17.59	17.87	17.27	15.98	12.19	14.06	15.07	8.46
Merged-chr5-102060471-3	chr5	102060380	102060580	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	9441.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	10.5	8.55	7.99	12.47	8.18	14.11	11.63	23.58	17.9	18.08	17.08	32.89
Merged-chr10-119050159-3	chr10	119050039	119050239	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152787, exon 2 of 4)	non-coding (NR_152787, exon 2 of 4)	360.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	13.33	10.56	8.56	4.02	13.91	11.92	4.32	8.1	19.67	13.56	11.05	6.58
Merged-chr10-20776888-2	chr10	20776786	20776986	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51808.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	9.29	5.28	5.13	4.83	6.14	8.78	10.63	10.63	22.62	6.03	20.6	8.46
Merged-chr11-120349253-4	chr11	120349200	120349400	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313923)	promoter-TSS (NM_001313923)	622.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	10.5	9.31	15.4	8.45	7.77	9.72	12.95	6.56	18.29	16.07	11.05	16.29
Merged-chr17-13441211-1	chr17	13441111	13441311	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-80245.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	2.42	0.5	0.0	5.63	13.09	14.74	24.25	4.71	2.16	2.51	6.03	1.88
Merged-chr3-32421288-2	chr3	32421191	32421391	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14860.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	11.31	16.6	18.25	20.51	8.59	3.45	7.64	13.79	7.87	6.03	5.02	4.39
Merged-chr8-16429954-2	chr8	16429849	16430049	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-261111.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	1.21	3.02	5.13	8.04	4.5	9.09	10.3	15.39	20.46	9.04	13.57	14.41
Merged-chr3-87401472-2	chr3	87401398	87401598	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310545, intron 10 of 10)	intron (NM_001310545, intron 10 of 10)	25111.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	3.63	3.02	3.99	4.02	7.77	4.08	8.64	5.33	27.14	24.1	33.16	24.12
Merged-chr3-52501899-3	chr3	52501787	52501987	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15077.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	4.04	6.29	18.25	14.88	16.77	16.31	12.29	32.69	12.39	10.04	4.52	9.08
Merged-chr13-37678136-3	chr13	37678036	37678236	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147902.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.67	11.57	14.26	10.86	13.09	16.31	3.65	13.23	14.16	11.55	12.56	10.65
Merged-chr7-6194314-1	chr7	6194214	6194414	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2776.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	4.85	6.29	10.84	5.23	8.18	4.7	5.65	6.9	6.29	4.52	17.08	5.64
Merged-chr14-26971683-3	chr14	26971588	26971788	+	867.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1137.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	33.92	19.87	15.4	15.69	11.86	31.67	11.29	9.87	25.37	25.11	13.57	10.65
Merged-chr6-129462198-3	chr6	129462103	129462303	+	867.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_132130, exon 6 of 6)	non-coding (NR_132130, exon 6 of 6)	-10203.0	NM_175526	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	6.06	8.05	10.27	12.87	27.41	15.68	15.94	22.04	16.13	9.04	13.57	10.96
Merged-chr12-80769830-3	chr12	80769744	80769944	+	867.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9129.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	6.06	10.06	7.99	13.27	2.45	11.92	3.99	7.99	14.16	9.04	15.58	3.76
Merged-chr1-86038353-3	chr1	86038240	86038440	+	867.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7523.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	9.69	8.55	8.56	10.05	11.05	16.93	8.3	12.87	23.01	16.57	29.65	17.23
Merged-chr3-81052518-3	chr3	81052435	81052635	+	867.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	16119.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	11.31	8.05	10.27	10.46	19.23	18.81	18.93	18.53	18.1	17.07	14.07	5.95
Merged-chr17-28951872-3	chr17	28951777	28951977	+	867.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	-559.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	12.92	7.55	10.84	6.84	21.68	16.62	9.3	13.68	16.13	19.08	7.03	14.41
Merged-chr2-12350574-2	chr2	12350485	12350685	+	867.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149732, intron 14 of 15)	intron (NR_149732, intron 14 of 15)	-48641.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	5.25	2.01	18.25	18.1	12.68	5.33	20.93	21.0	7.87	6.53	8.54	4.07
Merged-chr6-137560439-2	chr6	137560342	137560542	+	867.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	10567.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	10.9	3.77	19.4	18.9	12.27	8.47	8.3	14.41	5.31	9.04	14.07	5.33
Merged-chr11-101581437-5	chr11	101581316	101581516	+	867.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	-826.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	9.69	4.53	13.12	4.02	18.0	11.92	15.94	10.4	12.59	7.03	6.03	12.84
Merged-chr17-5402215-3	chr17	5402104	5402304	+	867.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16563.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	17.36	9.81	5.13	13.27	11.05	20.07	14.28	9.28	19.28	13.56	13.57	3.13
Merged-chr12-83999484-3	chr12	83999388	83999588	+	867.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10014.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	14.54	6.29	8.56	12.87	11.45	23.52	13.95	14.52	12.59	9.54	22.61	15.98
Merged-chr13-51964430-2	chr13	51964275	51964475	+	867.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117700.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.65	2.01	3.99	1.61	7.36	4.39	6.98	3.87	4.52	6.03	4.02	2.19
Merged-chr10-99270017-2	chr10	99269903	99270103	+	867.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6772.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.08	3.52	10.84	11.66	13.5	10.66	2.33	3.34	6.49	15.06	5.53	6.89
Merged-chr8-69007212-3	chr8	69007111	69007311	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81525.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.86	5.28	15.4	17.7	9.0	2.2	8.3	10.74	12.0	6.03	21.61	13.47
Merged-chr13-95778967-3	chr13	95778882	95779082	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	82062.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	4.44	5.53	4.56	16.89	12.68	18.19	15.61	18.28	21.64	26.61	26.13	17.54
Merged-chr7-14533649-1	chr7	14533549	14533749	+	867.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28522.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	1.62	1.76	1.14	1.61	4.91	9.72	6.31	13.79	15.93	7.03	7.54	4.07
Merged-chr12-4189819-3	chr12	4189724	4189924	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44141.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	10.09	9.31	7.99	12.47	29.86	21.32	19.27	22.07	17.11	16.57	13.06	12.53
Merged-chr13-107027394-1	chr13	107027294	107027494	+	867.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015471, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	4824.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	7.27	4.28	5.13	7.24	9.82	14.74	9.63	13.15	3.54	4.52	6.53	9.08
Merged-chr7-102153843-1	chr7	102153743	102153943	+	867.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_022979, exon 16 of 23)	exon (NM_022979, exon 16 of 23)	-37130.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	2.02	1.01	5.7	0.4	12.68	6.9	5.65	10.93	6.69	6.03	7.03	7.52
Merged-chr7-132315635-3	chr7	132315527	132315727	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-37.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	16.96	15.85	19.4	13.27	17.18	10.98	16.28	13.93	16.13	11.05	10.05	11.28
Merged-chr4-16071500-3	chr4	16071416	16071616	+	867.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-57628.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	13.73	11.57	16.54	10.05	15.14	8.15	4.98	13.71	23.21	16.57	16.08	12.22
Merged-chr11-62005664-3	chr11	62005520	62005720	+	867.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48857.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	4.44	10.31	17.11	1.61	8.18	14.42	14.28	6.59	8.26	12.05	11.05	7.52
Merged-chr12-78894314-3	chr12	78894221	78894421	+	867.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013738, intron 5 of 8)	intron (NM_013738, intron 5 of 8)	12617.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	14.13	12.58	23.39	9.25	19.64	9.41	14.28	23.13	14.16	13.56	21.1	14.72
Merged-chr13-101906584-3	chr13	101906478	101906678	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138361.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	11.71	3.02	13.69	7.64	20.86	19.13	15.61	30.2	19.67	14.56	12.56	13.16
Merged-chr16-50589934-3	chr16	50589831	50590031	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040566)	promoter-TSS (NR_040566)	-572.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	16.15	2.77	25.1	17.7	12.27	7.53	12.95	21.2	12.19	11.05	16.08	5.01
Merged-chr12-78219350-3	chr12	78219208	78219408	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7347.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	8.08	9.81	7.42	10.46	13.09	14.11	9.3	15.03	17.51	22.09	13.06	7.21
Merged-chr2-118905598-3	chr2	118905512	118905712	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	3997.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	14.54	15.09	27.38	14.08	10.64	15.37	7.31	13.57	23.01	31.13	19.09	12.53
Merged-chr15-12371354-3	chr15	12371239	12371439	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081064, intron 20 of 23)	intron (NM_001081064, intron 20 of 23)	49843.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	16.15	5.28	10.27	14.88	5.32	20.38	16.28	17.27	16.13	12.05	29.65	15.04
Merged-chr8-90822563-3	chr8	90822456	90822656	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6279.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	19.79	11.82	20.54	17.29	8.59	6.59	5.65	7.6	12.39	14.56	15.07	13.47
Merged-chr10-8124294-1	chr10	8124194	8124394	+	867.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168171.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	1.21	2.01	0.57	2.41	6.95	15.37	11.29	11.07	1.77	3.51	9.55	2.19
Merged-chr7-62464486-3	chr7	62464394	62464594	+	867.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013788)	promoter-TSS (NM_013788)	16.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	11.71	12.58	26.81	22.52	65.05	63.34	74.07	69.7	9.44	10.04	17.08	7.21
Merged-chr17-88581703-2	chr17	88581636	88581836	+	867.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 19 of 21)	intron (NM_028658, intron 19 of 21)	-44819.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	7.67	3.77	2.85	2.82	16.77	6.59	5.98	7.68	11.21	9.04	5.02	7.21
Merged-chr17-88349334-1	chr17	88349234	88349434	+	867.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91370.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.04	2.52	4.56	2.41	6.55	11.92	8.97	13.96	1.38	2.01	6.03	1.25
Merged-chr10-121370228-3	chr10	121370136	121370336	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	5146.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	9.29	7.04	5.7	4.83	13.09	13.48	5.31	14.8	12.19	16.07	20.6	5.95
Merged-chr7-45521525-3	chr7	45521408	45521608	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045555, intron 11 of 13)	B1_Mur4|SINE|Alu	4760.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	15.75	12.07	11.98	13.27	19.23	8.47	2.99	5.75	20.46	6.53	24.12	12.53
Merged-chr16-30686680-3	chr16	30686567	30686767	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86944.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	12.92	4.28	5.13	15.69	10.64	11.29	7.64	7.68	23.41	19.08	14.07	8.46
Merged-chr13-17982846-3	chr13	17982731	17982931	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10520.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	9.69	9.06	10.27	11.66	12.27	9.09	26.91	21.25	15.14	18.58	22.61	12.22
Merged-chr5-100574564-3	chr5	100574472	100574672	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2367.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	12.92	14.34	11.41	9.25	13.09	11.6	10.63	9.79	27.54	22.59	22.61	10.02
Merged-chrX-12839807-3	chrX	12839690	12839890	+	867.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	77512.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	15.75	6.79	14.83	10.86	26.59	13.8	9.97	13.32	22.23	15.57	20.6	10.96
Merged-chr11-110430024-3	chr11	110429928	110430128	+	867.175903	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	30926.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	17.77	19.12	9.13	1.61	9.82	24.77	12.29	3.42	19.08	17.57	24.62	12.22
Merged-chr19-57404317-3	chr19	57404233	57404433	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	16.56	9.06	2.85	10.46	10.64	14.42	15.61	18.14	14.95	13.05	16.58	9.4
Merged-chr7-114281858-3	chr7	114281750	114281950	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5734.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	14.13	7.8	18.83	15.69	6.95	12.23	6.64	14.55	26.36	9.54	41.71	17.54
Merged-chr9-118679046-3	chr9	118678943	118679143	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 11 of 27)	MTD|LTR|ERVL-MaLR	-32649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.88	10.06	3.99	7.24	12.68	17.56	10.3	10.68	27.14	29.62	27.13	11.59
Merged-chr16-33520062-3	chr16	33519965	33520165	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	1470.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	16.96	12.83	11.41	7.24	25.77	14.11	24.91	32.52	13.37	13.56	8.04	8.46
Merged-chr4-132514066-3	chr4	132513945	132514145	+	867.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3589.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	12.92	12.07	9.7	8.04	15.14	13.8	12.29	10.15	15.74	22.09	19.6	11.28
Merged-chr1-167340406-2	chr1	167340390	167340590	+	867.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-9501.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	7.67	5.53	14.83	6.44	9.41	7.53	5.98	3.08	6.49	6.03	1.0	8.77
Merged-chr4-10920588-2	chr4	10920477	10920677	+	867.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46079.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	6.46	3.02	6.28	10.05	6.95	3.45	5.31	5.86	8.06	17.57	7.54	6.89
Merged-chr12-12176454-3	chr12	12176348	12176548	+	867.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85691.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.46	11.32	9.7	1.61	16.36	4.39	8.3	16.88	14.36	10.04	13.06	11.9
Merged-chr7-123025311-3	chr7	123025203	123025403	+	867.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54739.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	8.88	8.3	15.4	6.84	15.96	16.31	8.97	17.16	23.01	19.58	27.13	16.92
Merged-chr9-59959480-3	chr9	59959358	59959558	+	867.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101600)	TTS (NM_001101600)	8164.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	21.8	17.36	6.85	9.65	7.36	18.5	5.31	9.45	15.34	16.57	20.1	7.21
Merged-chr10-98897726-3	chr10	98897616	98897816	+	867.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16926.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.25	7.04	9.13	16.89	17.59	10.98	12.95	19.51	17.9	9.54	17.59	16.92
Merged-chr17-5747618-3	chr17	5747623	5747823	+	867.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50934.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.02	6.79	3.99	8.45	5.32	6.59	2.66	6.67	7.67	3.01	9.04	13.47
Merged-chr6-51523968-3	chr6	51523878	51524078	+	867.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	75.0	NM_001127349	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	21.4	18.11	12.55	12.07	17.59	13.48	14.62	18.11	14.16	23.6	11.56	11.9
Merged-chr10-43672600-3	chr10	43672496	43672696	+	867.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73562.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	15.75	8.55	12.55	17.7	13.09	13.17	16.28	16.15	11.8	12.05	23.11	17.86
Merged-chr17-35023891-3	chr17	35023770	35023970	+	867.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347347, exon 13 of 17)	exon (NM_001347347, exon 13 of 17)	4146.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	19.38	8.8	15.4	3.22	15.14	27.91	8.64	25.21	25.37	19.08	14.07	16.29
Merged-chr13-41601859-3	chr13	41601709	41601909	+	867.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4407.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	12.52	5.03	6.28	19.71	5.32	13.17	18.93	17.75	7.67	4.52	25.63	6.89
Merged-chr8-88656189-3	chr8	88656102	88656302	+	867.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8855.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	18.57	7.8	30.8	13.67	11.86	16.93	15.94	11.44	14.95	26.11	21.61	9.71
Merged-chr13-37830912-1	chr13	37830812	37831012	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	3519.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.63	2.52	10.84	4.42	6.14	3.76	7.97	7.57	6.49	5.52	7.54	4.39
Merged-chr5-21367665-3	chr5	21367568	21367768	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5005.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	13.33	14.09	22.82	11.66	11.05	15.68	4.65	11.75	24.0	12.55	17.59	15.04
Merged-chr1-156014076-2	chr1	156013975	156014175	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	20742.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.86	11.82	6.85	6.44	1.64	9.09	1.33	9.17	14.95	4.02	10.05	8.46
Merged-chr10-93311013-2	chr10	93310896	93311096	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013508, exon 1 of 5)	5' UTR (NM_013508, exon 1 of 5)	163.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	14.54	18.86	9.7	8.04	26.59	30.1	12.95	13.99	19.08	4.52	9.55	5.01
Merged-chr18-46544764-1	chr18	46544664	46544864	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-18793.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	2.42	0.25	2.28	3.22	1.64	4.08	5.98	6.25	1.18	2.51	2.01	4.39
Merged-chr8-125531852-3	chr8	125531754	125531954	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	ORR1E|LTR|ERVL-MaLR	38009.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	14.54	14.34	10.27	12.07	12.27	20.38	11.29	14.89	11.41	13.05	13.06	6.89
Merged-chr6-134877049-1	chr6	134876949	134877149	+	867.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167694, intron 3 of 3)	intron (NM_001167694, intron 3 of 3)	10736.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	0.81	1.76	1.14	2.01	0.0	1.88	2.66	1.68	13.18	7.03	14.57	2.19
Merged-chr16-55848032-3	chr16	55847947	55848147	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 5 of 5)	intron (NM_001134457, intron 5 of 5)	-9406.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.27	4.78	14.83	14.48	12.27	18.5	10.3	16.15	12.59	6.03	17.08	12.22
Merged-chr3-51327937-1	chr3	51327837	51328037	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	L1M4c|LINE|L1	12707.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.63	1.76	5.7	6.44	9.82	10.35	6.98	7.54	5.9	8.54	11.05	9.08
Merged-chr1-21271548-1	chr1	21271448	21271648	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26764.0	NR_002858	241041.0	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	3.23	6.04	12.55	7.24	3.27	4.39	24.58	11.1	2.16	6.53	9.55	8.77
Merged-chr15-66883733-1	chr15	66883633	66883833	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7660.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	1.01	1.71	0.4	4.91	10.66	5.98	7.46	0.39	0.0	1.0	1.88
Merged-chr9-100474139-1	chr9	100474039	100474239	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033543, intron 2 of 6)	intron (NM_001033543, intron 2 of 6)	12334.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	1.62	10.31	4.56	5.63	4.91	15.05	8.64	0.84	9.24	4.52	7.03	3.45
Merged-chr10-45277183-3	chr10	45277086	45277286	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12119.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	8.88	7.8	7.99	9.25	16.36	43.59	29.23	30.34	36.98	22.59	41.2	19.42
Merged-chr17-33772119-1	chr17	33772019	33772219	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	9456.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	9.29	5.03	6.85	4.42	3.68	10.66	3.65	9.48	1.97	0.0	11.56	1.88
Merged-chr6-16360182-1	chr6	16360082	16360282	+	867.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	538259.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.25	0.0	0.0	0.0	0.0	0.0	0.0	12.78	5.52	13.06	13.16
Merged-chr12-59207126-1	chr12	59207026	59207226	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033156, intron 1 of 3)	B1F|SINE|Alu	12357.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	2.42	5.03	5.7	2.41	2.05	12.23	5.98	5.5	5.51	6.03	9.04	2.19
Merged-chr17-5807334-1	chr17	5807234	5807434	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7844.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.06	4.78	5.7	1.61	6.95	7.21	4.65	10.96	3.15	3.01	11.56	5.64
Merged-chr15-38290305-1	chr15	38290205	38290405	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9595.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.85	4.02	3.99	3.62	2.86	2.51	8.64	9.17	4.92	5.02	7.54	6.89
Merged-chr19-55253420-1	chr19	55253320	55253520	+	867.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027976)	promoter-TSS (NM_027976)	51.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	7.27	14.09	9.13	11.26	4.5	16.62	9.3	7.6	11.21	18.08	10.55	5.64
Merged-chr4-105485355-2	chr4	105485262	105485462	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	328015.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.65	3.27	6.28	9.25	7.77	8.78	11.29	17.89	15.34	6.03	25.63	9.4
Merged-chr1-87187165-3	chr1	87187080	87187280	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027084, exon 11 of 13)	exon (NM_027084, exon 11 of 13)	-3417.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	4.85	8.55	13.12	8.85	12.27	12.86	6.31	13.77	15.14	9.54	16.58	14.1
Merged-chr2-70091356-3	chr2	70091254	70091454	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177376, intron 2 of 34)	MLT1B|LTR|ERVL-MaLR	52228.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	9.69	6.54	15.4	22.52	7.77	26.03	22.26	30.5	14.36	7.03	15.07	10.65
Merged-chr1-53816584-3	chr1	53816470	53816670	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	MTE2b|LTR|ERVL-MaLR	-31355.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	10.09	7.04	21.11	11.66	25.36	12.54	16.94	27.95	19.08	12.55	14.07	15.66
Merged-chr12-32489972-3	chr12	32489882	32490082	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111193.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	12.11	9.06	7.99	12.47	11.45	22.58	16.28	19.01	8.06	5.52	15.58	10.34
Merged-chr3-20005800-3	chr3	20005691	20005891	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276250, intron 19 of 19)	intron (NM_001276250, intron 19 of 19)	29519.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	12.92	3.27	21.68	17.7	11.45	10.03	12.29	23.75	19.47	6.03	20.1	6.89
Merged-chr8-84968774-3	chr8	84968663	84968863	+	866.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-859.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	14.54	6.04	19.4	6.84	7.77	7.53	11.96	5.72	16.13	30.13	31.66	16.92
Merged-chr9-58276087-3	chr9	58276110	58276310	+	866.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	23046.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	2.42	2.52	4.56	0.8	6.95	5.33	5.98	1.88	7.47	7.03	7.54	4.07
Merged-chr3-90251722-3	chr3	90251636	90251836	+	866.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013901, exon 4 of 4)	exon (NM_013901, exon 4 of 4)	-2122.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	6.06	8.3	9.7	5.23	4.09	14.11	9.97	12.39	9.44	1.0	15.07	10.02
Merged-chr18-50034169-2	chr18	50034050	50034250	+	866.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	3166.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	16.56	3.02	14.26	10.46	8.59	6.9	6.31	12.11	8.26	4.52	12.06	0.63
Merged-chr2-38511827-3	chr2	38511791	38511991	+	866.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	15.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.67	7.8	3.99	7.24	17.59	15.05	7.64	12.64	20.65	7.53	16.08	6.27
Merged-chr2-156278858-2	chr2	156278755	156278955	+	866.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172674, intron 9 of 17)	intron (NM_172674, intron 9 of 17)	-33618.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	10.5	10.56	6.85	4.42	20.46	11.6	7.31	14.33	6.29	5.52	10.55	6.58
Merged-chr14-44047977-3	chr14	44047819	44048019	+	866.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41501.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	8.48	7.8	6.85	10.86	7.77	13.48	12.62	9.7	6.1	12.05	9.04	9.4
Merged-chr1-92985932-3	chr1	92985823	92986023	+	866.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_022320, exon 2 of 2)	3' UTR (NM_022320, exon 2 of 2)	7020.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.85	6.04	9.7	8.85	16.36	15.05	22.59	14.89	18.69	8.03	15.58	5.95
Merged-chr18-9731643-1	chr18	9731543	9731743	+	866.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	23995.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	5.65	4.53	15.97	2.41	9.82	9.41	10.3	15.95	8.46	5.52	3.01	2.82
Merged-chr6-5104461-1	chr6	5104361	5104561	+	866.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89485.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	1.21	2.77	4.56	4.42	2.45	10.03	4.98	7.29	2.36	2.01	4.02	5.01
Merged-chr4-110351713-3	chr4	110351619	110351819	+	866.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163397, intron 1 of 5)	CpG	192.0	NM_001163397	15572.0	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV like RNA binding protein 4	protein-coding	21.4	14.84	26.24	21.32	6.14	10.98	10.63	12.31	1.77	5.02	4.02	7.21
Merged-chr17-44116196-1	chr17	44116096	44116296	+	866.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-10387.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	9.29	5.28	8.56	3.62	9.0	6.59	7.97	11.19	2.95	2.51	2.01	1.88
Merged-chr1-144240619-2	chr1	144240512	144240712	+	866.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	8492.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	14.94	17.36	1.14	8.85	17.59	17.56	7.64	6.87	9.83	7.03	5.53	2.82
Merged-chr19-53535615-2	chr19	53535525	53535725	+	866.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6307.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	10.9	8.05	15.97	8.85	9.41	16.31	17.61	22.04	1.97	2.51	1.0	2.19
Merged-chr8-25990186-2	chr8	25990152	25990352	+	866.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	3869.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	6.06	3.52	0.57	8.45	3.68	4.39	1.99	4.32	8.06	7.53	10.55	7.52
Merged-chr7-96413697-2	chr7	96413597	96413797	+	866.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-71733.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.86	9.81	3.42	10.86	15.55	8.78	11.63	14.41	5.51	6.53	4.02	4.07
Merged-chr6-142508861-3	chr6	142508762	142508962	+	866.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-905.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	7.27	8.55	12.55	22.52	15.55	24.15	14.62	38.47	18.69	11.05	28.64	15.04
Merged-chr9-62977402-3	chr9	62977299	62977499	+	866.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	3480.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	15.75	17.86	11.41	4.83	16.77	26.65	6.31	12.5	31.67	24.1	23.11	11.9
Merged-chr7-114275537-2	chr7	114275447	114275647	+	866.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011965, intron 1 of 9)	intron (NM_011965, intron 1 of 9)	569.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.85	6.29	10.27	7.24	13.5	7.84	8.3	10.96	10.82	12.55	15.58	11.59
Merged-chr10-127050275-3	chr10	127050174	127050374	+	866.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010009, exon 5 of 9)	exon (NM_010009, exon 5 of 9)	2028.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	13.73	14.09	15.97	10.86	11.86	21.32	8.97	9.39	25.77	19.58	11.05	13.47
Merged-chr4-55763317-3	chr4	55763216	55763416	+	866.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230841.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	10.9	14.84	31.38	20.51	19.64	9.41	23.25	22.68	15.54	8.03	18.59	17.23
Merged-chr3-14572121-2	chr3	14572015	14572215	+	866.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028915, intron 18 of 18)	intron (NM_028915, intron 18 of 18)	-6556.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	16.56	14.84	23.39	12.87	9.82	10.35	6.64	18.25	8.46	4.02	5.53	9.4
Merged-chr2-68907848-3	chr2	68907756	68907956	+	866.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	L1MB3|LINE|L1	46415.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	13.33	10.06	19.4	31.77	16.36	16.62	9.3	21.84	13.96	13.56	9.04	9.08
Merged-chr8-122880155-3	chr8	122880091	122880291	+	866.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31817.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.81	5.79	5.7	6.44	4.91	8.15	4.65	6.0	9.24	8.03	16.58	10.02
Merged-chr2-24384978-3	chr2	24384998	24385198	+	866.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177611)	promoter-TSS (NM_177611)	-234.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	2.83	3.77	6.28	12.47	6.95	2.2	5.98	5.07	11.21	7.03	5.53	7.21
Merged-chr3-121369640-3	chr3	121369547	121369747	+	866.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56894.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	10.9	3.27	9.7	9.25	11.45	13.48	11.29	13.57	14.75	23.6	35.68	19.11
Merged-chr13-48967294-6	chr13	48967228	48967428	+	866.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015601)	promoter-TSS (NR_015601)	500.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	14.13	7.29	20.54	10.86	9.82	7.21	12.62	10.71	11.41	12.05	18.09	12.53
Merged-chr12-102330965-1	chr12	102330865	102331065	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	47324.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.83	1.76	18.25	8.45	9.82	2.51	5.98	10.63	3.15	7.53	8.04	4.39
Merged-chr8-34744383-1	chr8	34744283	34744483	+	866.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63227.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.83	0.5	1.71	0.8	0.82	0.31	0.33	3.14	29.7	27.11	20.6	10.02
Merged-chr7-133635754-3	chr7	133635648	133635848	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1927.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	15.75	7.04	14.26	12.87	4.91	7.21	9.97	11.89	15.54	8.03	18.59	8.77
Merged-chr18-77065835-3	chr18	77065754	77065954	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164168, exon 1 of 14)	5' UTR (NM_001164168, exon 1 of 14)	174.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	6.86	7.55	12.55	8.45	7.36	14.42	20.26	12.87	15.34	9.04	13.57	7.52
Merged-chr14-55778111-3	chr14	55778012	55778212	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080435, intron 10 of 25)	intron (NM_080435, intron 10 of 25)	5960.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	6.06	11.82	8.56	10.86	11.05	20.7	8.64	18.67	17.9	14.56	32.16	16.29
Merged-chr4-32187338-3	chr4	32187245	32187445	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	223238.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	9.69	6.54	17.68	20.51	13.91	17.25	16.28	23.44	16.33	12.05	16.58	4.7
Merged-chr17-24549063-2	chr17	24548969	24549169	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-881.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	6.06	2.26	6.85	6.03	11.45	10.66	6.64	2.5	17.11	21.59	28.64	10.96
Merged-chr6-146638686-2	chr6	146638584	146638784	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3895.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	2.42	1.51	5.13	3.22	2.05	6.59	2.66	9.2	20.26	16.57	36.18	13.47
Merged-chr1-180811186-3	chr1	180811060	180811260	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008210, intron 2 of 3)	intron (NM_008210, intron 2 of 3)	2445.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	12.52	10.56	2.85	0.8	11.86	18.5	3.32	1.23	15.93	17.57	14.57	5.95
Merged-chr13-118386746-2	chr13	118386633	118386833	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	519.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	6.06	9.31	13.69	9.65	11.86	4.08	10.96	12.03	17.7	17.57	23.11	11.9
Merged-chr10-25395559-1	chr10	25395459	25395659	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	-12809.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.65	3.02	9.13	4.42	6.14	16.31	12.95	8.44	5.31	2.51	3.01	2.19
Merged-chr3-30600849-3	chr3	30600781	30600981	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	10.9	10.56	11.98	8.04	12.68	6.9	9.97	11.83	13.57	7.53	8.04	14.72
Merged-chr18-34338867-1	chr18	34338767	34338967	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	7722.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	3.23	4.02	2.28	2.41	7.77	3.45	6.98	5.66	2.36	10.54	6.03	5.64
Merged-chr13-94286248-1	chr13	94286148	94286348	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-417.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	2.83	2.52	4.56	1.61	11.05	5.64	15.94	10.37	7.47	6.53	7.03	5.95
Merged-chr6-89262561-3	chr6	89262458	89262658	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23167.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	10.9	6.54	11.41	4.83	21.68	44.21	18.27	43.54	39.53	33.64	64.32	36.34
Merged-chr5-148700420-2	chr5	148700328	148700528	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41412.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.85	3.02	5.7	10.46	1.64	6.59	4.32	5.8	31.08	24.1	42.21	28.82
Merged-chr13-36700053-3	chr13	36699951	36700151	+	866.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	34426.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	9.69	11.82	13.69	14.08	11.45	11.92	4.98	9.34	16.72	9.54	17.08	17.23
Merged-chr2-138246086-3	chr2	138245976	138246176	+	866.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-10508.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.06	12.32	15.97	13.27	9.41	12.86	18.27	16.99	12.19	7.53	19.6	7.83
Merged-chr6-120189436-3	chr6	120189335	120189535	+	866.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-4388.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	10.9	4.78	5.7	14.48	23.73	16.93	22.59	32.64	9.64	19.58	15.58	10.96
Merged-chr1-86587115-3	chr1	86587014	86587214	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172974, exon 2 of 8)	5' UTR (NM_172974, exon 2 of 8)	4193.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	12.92	6.54	5.13	8.04	4.91	15.05	5.31	9.9	17.51	2.01	8.04	9.4
Merged-chr3-142766029-3	chr3	142765878	142766078	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	731.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	8.88	8.8	8.56	7.64	12.27	20.38	16.28	15.48	15.54	12.55	14.57	6.89
Merged-chr6-116266826-3	chr6	116266732	116266932	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290339, intron 1 of 6)	L1MC1|LINE|L1	300.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	22.61	26.41	11.98	10.05	31.09	33.24	12.29	26.3	45.04	35.15	41.2	18.8
Merged-chr6-51362777-3	chr6	51362686	51362886	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16924.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	8.48	11.57	9.7	8.85	14.73	13.8	11.29	15.76	15.34	9.54	23.11	5.33
Merged-chr16-48865188-3	chr16	48865074	48865274	+	866.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7434.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	11.31	8.8	25.1	18.5	17.18	12.54	16.61	21.87	10.23	5.02	37.69	12.53
Merged-chr3-105066642-4	chr3	105066554	105066754	+	866.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029228)	promoter-TSS (NM_029228)	-190.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	8.88	8.3	20.54	10.86	4.91	4.39	6.31	4.79	9.44	10.54	10.05	5.33
Merged-chr14-105232630-2	chr14	105232520	105232720	+	866.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26053.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	6.46	10.06	6.28	3.62	5.73	9.41	7.64	8.78	14.36	15.06	8.54	5.01
Merged-chr13-98264283-2	chr13	98264191	98264391	+	866.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271391, intron 1 of 7)	intron (NM_001271391, intron 1 of 7)	1215.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	2.83	8.55	7.99	3.62	2.86	20.07	8.64	6.42	11.6	11.05	9.55	5.33
Merged-chr6-57743533-2	chr6	57743439	57743639	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	41084.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	4.85	4.78	5.7	6.44	8.18	9.41	8.97	11.55	12.39	19.08	30.65	14.72
Merged-chr1-161443867-3	chr1	161443752	161443952	+	866.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48414.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	12.92	8.55	23.39	26.55	18.41	18.5	23.58	41.86	11.8	19.08	21.1	7.83
Merged-chr13-41128497-3	chr13	41128385	41128585	+	866.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324525, intron 4 of 27)	intron (NM_001324525, intron 4 of 27)	10474.0	NM_001324525	637277.0		NM_001324525	ENSMUSG00000038651	Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	1.21	7.55	13.12	8.04	9.0	4.08	2.33	8.27	18.29	12.05	4.52	4.7
Merged-chr18-57593922-1	chr18	57593822	57594022	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41525.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	9.29	2.77	6.85	14.88	8.18	4.7	7.31	12.0	7.08	5.52	4.02	6.27
Merged-chr1-180698220-1	chr1	180698120	180698320	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1186.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	11.31	5.03	7.99	4.02	10.23	5.64	11.96	8.36	2.95	3.01	8.54	5.01
Merged-chr3-79181821-3	chr3	79181722	79181922	+	866.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31097.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	7.27	8.55	10.27	8.85	11.05	15.37	7.97	10.79	29.7	23.6	30.15	24.75
Merged-chr1-184083263-1	chr1	184083163	184083363	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48882.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.81	1.51	2.28	4.42	3.68	8.78	7.64	14.83	5.9	7.53	5.02	14.72
Merged-chr19-14243975-1	chr19	14243875	14244075	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	191975.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	3.63	2.77	0.0	2.82	10.23	4.08	6.98	6.93	3.74	1.0	0.0	2.51
Merged-chr8-11049076-1	chr8	11048976	11049176	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-40646.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.04	2.01	1.14	3.62	7.77	3.45	7.31	7.91	1.18	2.51	5.02	4.07
Merged-chr8-72325625-1	chr8	72325525	72325725	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6563.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	10.5	11.07	4.56	6.03	13.91	17.25	11.96	8.33	11.8	10.04	7.54	1.25
Merged-chr5-3343105-4	chr5	3343033	3343233	+	866.3214109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-760.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.25	7.55	5.7	8.85	9.41	10.35	10.96	8.58	10.23	18.58	8.54	15.04
Merged-chr6-83436725-3	chr6	83436610	83436810	+	866.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	4968.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	9.69	10.56	22.25	11.26	13.5	4.39	6.64	10.57	13.37	8.03	18.09	4.39
Merged-chr10-57731842-3	chr10	57731748	57731948	+	866.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-53075.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.67	9.31	23.39	9.25	15.96	12.23	6.31	21.56	13.18	5.02	15.58	6.27
Merged-chr4-33242738-3	chr4	33242634	33242834	+	866.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	6053.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	18.98	27.42	9.7	13.67	14.73	32.3	10.3	7.65	17.51	11.55	8.54	10.02
Merged-chr6-122870088-3	chr6	122869980	122870180	+	866.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4477.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	9.69	10.31	7.42	8.85	22.91	18.19	20.93	18.87	17.31	19.08	15.58	11.59
Merged-chr12-34449542-3	chr12	34449438	34449638	+	866.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	79351.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	8.48	11.07	12.55	14.88	18.82	14.11	18.93	26.92	20.06	6.03	16.58	7.52
Merged-chr16-50632822-3	chr16	50632703	50632903	+	866.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-41649.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	12.11	6.29	10.84	24.94	21.27	15.37	35.21	43.12	13.18	8.03	15.07	12.53
Merged-chr19-34879035-4	chr19	34878932	34879132	+	866.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001114339, exon 1 of 7)	exon (NM_001114339, exon 1 of 7)	423.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	11.71	12.83	10.84	18.1	12.27	8.78	11.29	11.55	10.42	7.53	7.54	9.71
Merged-chr4-88433553-3	chr4	88433473	88433673	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	5353.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	10.5	10.31	7.99	16.89	8.18	15.99	14.62	17.16	24.19	25.11	28.64	18.48
Merged-chr2-76114952-3	chr2	76114864	76115064	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-132997.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	11.31	9.06	3.42	5.63	9.41	9.09	0.66	6.9	19.67	14.56	19.6	10.65
Merged-chr11-68459648-3	chr11	68459555	68459755	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	L1ME2|LINE|L1	27530.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	8.48	5.28	9.13	4.02	18.41	25.71	8.64	11.8	27.73	25.61	18.59	10.96
Merged-chr9-21328252-3	chr9	21328153	21328353	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	7534.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	14.54	10.56	8.56	16.89	9.82	9.41	9.97	28.65	15.54	9.04	13.57	13.16
Merged-chr8-117158514-3	chr8	117158392	117158592	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081151, intron 1 of 10)	CpG	357.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	8.08	7.29	5.7	15.69	23.73	14.42	15.61	9.42	19.28	10.04	13.06	19.42
Merged-chr9-95546874-3	chr9	95546785	95546985	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12932.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.65	6.54	10.84	11.26	18.82	18.5	15.94	17.22	30.68	23.1	28.64	12.84
Merged-chr12-75529589-3	chr12	75529492	75529692	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	66608.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	13.73	9.81	10.27	12.87	22.5	21.32	13.29	26.02	9.44	15.06	31.15	9.71
Merged-chr1-127978205-3	chr1	127978063	127978263	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	109390.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	8.08	5.03	6.85	4.42	15.96	16.62	11.63	24.28	11.01	8.54	27.13	14.1
Merged-chr9-49484976-2	chr9	49484904	49485104	+	866.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	1221.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	10.5	6.04	5.13	9.65	11.86	9.41	18.6	17.83	0.2	0.0	0.0	1.88
Merged-chr11-95595609-1	chr11	95595509	95595709	+	866.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7911.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	20.19	18.11	13.69	16.09	0.41	4.08	1.99	2.38	6.29	2.51	8.04	3.76
Merged-chr1-144245066-3	chr1	144244960	144245160	+	866.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_015811, exon 5 of 5)	3' UTR (NM_015811, exon 5 of 5)	4044.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	9.69	14.59	9.7	12.87	31.09	16.31	10.3	19.49	9.83	10.54	12.56	12.53
Merged-chrX-38456937-3	chrX	38456840	38457040	+	866.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010685)	promoter-TSS (NM_010685)	-480.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	7.27	11.07	28.52	14.08	19.64	18.5	14.28	14.94	24.59	14.56	29.65	22.24
Merged-chrX-77802581-3	chrX	77802476	77802676	+	866.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6616.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	7.67	8.55	8.56	14.08	9.82	5.96	11.63	16.99	7.47	8.54	6.53	8.46
Merged-chr13-97254021-1	chr13	97253921	97254121	+	866.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007930)	TTS (NM_007930)	12916.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	12.11	12.58	27.95	24.53	0.0	0.0	4.32	2.86	3.15	2.01	0.5	3.13
Merged-chr9-105780199-1	chr9	105780099	105780299	+	866.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172927, intron 6 of 7)	LTR16A1|LTR|ERVL	29449.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	14.54	4.02	11.41	10.86	11.45	19.76	12.62	10.07	0.0	0.0	1.0	0.31
Merged-chr18-39638977-2	chr18	39638888	39639088	+	866.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-134509.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.06	3.52	6.28	0.0	11.45	9.09	7.97	5.3	16.13	8.03	8.54	8.77
Merged-chr3-146059595-3	chr3	146059504	146059704	+	866.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172864, intron 16 of 22)	Tigger7|DNA|TcMar-Tigger	48432.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	15.75	15.34	9.7	33.38	8.18	8.78	15.94	17.5	23.01	3.51	32.66	9.4
Merged-chr4-101302270-3	chr4	101302154	101302354	+	866.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36972.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	10.5	10.82	8.56	12.87	10.23	4.08	8.64	8.72	12.19	8.54	12.06	7.52
Merged-chr6-28486813-5	chr6	28486700	28486900	+	866.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6452.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	7.67	4.53	5.7	3.22	9.0	2.82	1.0	2.38	3.54	8.54	6.03	4.07
Merged-chr12-31634038-3	chr12	31633943	31634143	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007530, intron 1 of 6)	RSINE1|SINE|B4	554.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	15.75	8.55	13.12	8.04	11.86	13.8	12.62	13.74	17.31	15.57	23.11	9.4
Merged-chr4-45499431-3	chr4	45499345	45499545	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	31383.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	14.13	12.32	12.55	14.88	8.18	22.89	1.33	14.47	24.0	9.04	15.58	7.21
Merged-chr10-50657513-3	chr10	50657425	50657625	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 11 of 41)	intron (NM_198007, intron 11 of 41)	64856.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	5.65	15.85	10.84	10.86	14.32	24.46	6.98	17.92	28.91	23.1	46.23	22.24
Merged-chr9-69706065-3	chr9	69705953	69706153	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54887.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	11.31	4.02	14.83	9.65	20.46	28.85	24.91	22.18	12.39	9.54	16.58	8.14
Merged-chr12-56336726-3	chr12	56336618	56336818	+	866.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9176.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	10.9	11.57	25.1	12.07	14.32	16.62	5.65	20.69	19.08	5.52	28.14	10.65
Merged-chr14-122557528-3	chr14	122557455	122557655	+	866.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	23227.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.85	11.32	11.41	7.64	9.0	17.56	5.98	16.09	21.24	12.05	18.59	5.33
Merged-chr10-80376365-3	chr10	80376268	80376468	+	866.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6731.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	14.94	16.35	18.25	8.45	18.41	21.32	10.3	15.08	21.05	24.6	14.57	13.47
Merged-chr2-158155794-3	chr2	158155692	158155892	+	866.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9400.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	12.92	14.84	10.27	9.65	15.14	18.5	15.61	13.63	18.29	31.63	17.59	17.86
Merged-chr15-3982925-3	chr15	3982833	3983033	+	866.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-3360.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	12.11	9.31	17.68	15.69	10.23	12.54	8.64	15.2	20.85	8.03	9.04	8.77
Merged-chr2-90395168-3	chr2	90395070	90395270	+	866.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F3|LINE|L1	-5470.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	64.61	72.44	44.5	68.78	17.18	25.09	30.56	33.2	22.62	35.65	29.14	37.91
Merged-chr11-51935259-3	chr11	51935145	51935345	+	866.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-32386.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	9.69	10.56	22.25	16.49	9.82	11.92	11.63	12.08	22.62	21.59	24.62	14.1
Merged-chr2-36224794-2	chr2	36224698	36224898	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-5628.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	10.5	0.5	5.7	4.83	7.36	5.64	4.98	7.49	14.36	9.04	17.08	3.76
Merged-chr1-177441178-1	chr1	177441078	177441278	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1173.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	6.46	2.77	6.85	1.61	4.09	5.02	2.33	7.04	6.69	2.51	6.03	2.51
Merged-chr19-28827930-1	chr19	28827830	28828030	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5a|LINE|L1	-7236.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	2.02	4.28	3.42	6.03	4.09	6.27	11.96	13.12	4.92	5.52	10.05	5.33
Merged-chr16-92475519-1	chr16	92475419	92475619	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3223.0	NM_029740	76785.0	Mm.444318	NM_029740		2410124H12Rik	-	RIKEN cDNA 2410124H12 gene	protein-coding	3.63	5.28	9.7	7.24	10.64	10.66	10.3	16.15	6.69	3.01	7.03	5.95
Merged-chr5-35551973-1	chr5	35551873	35552073	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23097.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	5.25	2.52	1.14	5.23	4.5	5.02	6.31	7.49	1.38	5.02	2.51	3.13
Merged-chr9-111731938-2	chr9	111731840	111732040	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41592.0	NM_001324546	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	3.63	3.52	15.4	14.08	8.59	17.87	13.62	17.27	1.57	3.01	1.0	2.19
Merged-chr10-97241627-2	chr10	97241524	97241724	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-181854.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	4.04	3.52	5.7	4.02	14.32	10.03	3.99	8.19	11.01	11.05	7.03	5.01
Merged-chrX-155265596-3	chrX	155265507	155265707	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313718, intron 2 of 15)	intron (NM_001313718, intron 2 of 15)	3164.0	NM_019736	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	10.5	8.3	15.97	5.63	14.32	26.97	10.63	13.96	15.74	10.54	15.58	5.01
Merged-chr1-182461524-1	chr1	182461424	182461624	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173378, intron 17 of 17)	intron (NM_173378, intron 17 of 17)	52357.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	6.86	2.26	10.84	5.23	4.09	9.09	6.31	9.62	2.75	4.02	7.03	5.01
Merged-chr5-143731057-1	chr5	143730957	143731157	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	1223.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	4.04	3.02	6.85	10.46	7.36	3.14	2.99	8.89	6.29	4.52	8.54	4.7
Merged-chr2-61138709-1	chr2	61138609	61138809	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-163558.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	10.9	1.01	3.99	6.84	6.95	4.7	3.99	7.46	0.59	9.54	4.02	4.07
Merged-chr4-34388988-1	chr4	34388888	34389088	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-161627.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	5.65	6.04	1.14	14.88	16.36	7.84	3.99	10.57	3.74	5.02	5.53	3.13
Merged-chr9-16357970-1	chr9	16357870	16358070	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	20261.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.42	2.52	9.13	2.41	6.55	7.21	9.3	9.03	2.75	5.52	2.51	4.07
Merged-chr1-9804765-1	chr1	9804665	9804865	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	Lx9|LINE|L1	6635.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.04	3.27	7.99	12.87	4.5	2.51	5.98	10.79	5.7	2.51	10.55	7.52
Merged-chr9-45244076-1	chr9	45243976	45244176	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	22631.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	2.42	7.55	2.28	3.22	11.05	5.33	2.66	8.27	4.72	6.53	2.01	2.51
Merged-chr2-32151456-1	chr2	32151356	32151556	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172661, intron 1 of 29)	CpG	308.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	7.67	8.3	3.42	6.03	2.45	8.15	2.99	8.41	8.65	6.03	6.53	3.45
Merged-chr18-65742479-1	chr18	65742379	65742579	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177028, intron 11 of 14)	intron (NM_177028, intron 11 of 14)	44211.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	11.71	6.29	5.13	3.22	7.36	8.78	1.99	7.46	2.36	1.0	5.02	3.13
Merged-chr11-4122733-2	chr11	4122657	4122857	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4028.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	4.85	6.04	5.7	10.05	11.45	14.74	2.99	12.9	12.0	16.57	17.08	6.58
Merged-chrX-167826129-3	chrX	167826016	167826216	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359072, intron 1 of 16)	intron (NM_001359072, intron 1 of 16)	28961.0	NM_001290428	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	7.27	3.02	5.7	14.08	21.68	15.05	45.51	27.48	9.24	5.02	23.11	11.9
Merged-chr6-97148789-6	chr6	97148686	97148886	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175313)	promoter-TSS (NM_175313)	97.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	7.67	16.35	6.28	3.22	6.55	13.48	12.62	12.98	7.67	11.05	8.54	16.6
Merged-chr8-116629174-3	chr8	116629062	116629262	+	865.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103829.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	14.94	13.58	11.41	3.22	12.68	21.95	2.99	5.38	20.46	22.09	13.06	9.4
Merged-chr6-54772221-3	chr6	54772122	54772322	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44694.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	15.75	9.31	21.68	10.46	2.86	7.84	8.64	9.67	28.72	17.07	28.14	15.98
Merged-chr5-138341889-3	chr5	138341799	138341999	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61390.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	10.9	8.3	13.69	7.24	11.45	13.48	14.28	18.64	11.01	13.56	21.1	8.77
Merged-chr5-21141431-3	chr5	21141347	21141547	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34832.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.67	6.04	14.83	7.24	20.86	12.23	15.94	20.78	14.95	18.08	16.58	12.53
Merged-chrX-150458840-3	chrX	150458745	150458945	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359039, intron 1 of 2)	intron (NM_001359039, intron 1 of 2)	305.0	NM_001164683	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	12.52	15.09	13.69	14.48	14.32	17.87	13.29	21.9	11.21	14.56	14.07	14.1
Merged-chr11-121791618-3	chr11	121791527	121791727	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38591.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	11.31	7.29	9.13	16.89	29.05	38.57	22.59	20.94	21.64	23.1	24.12	10.34
Merged-chr1-89891592-3	chr1	89891503	89891703	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178119, exon 18 of 18)	3' UTR (NM_178119, exon 18 of 18)	39573.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	14.94	8.8	5.13	13.27	15.14	16.93	29.56	19.68	8.46	12.55	16.08	11.28
Merged-chr15-98699621-3	chr15	98699538	98699738	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8589.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	7.67	9.81	11.98	9.25	15.55	19.44	9.63	10.88	20.65	13.05	24.12	14.41
Merged-chr14-64311796-2	chr14	64311691	64311891	+	865.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	105165.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	8.88	3.77	13.69	9.25	8.59	9.41	6.31	23.78	13.57	3.01	16.58	5.64
Merged-chr16-18345398-3	chr16	18345286	18345486	+	865.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	-1454.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	17.77	8.55	13.69	17.7	13.5	8.78	9.63	15.11	15.93	17.07	12.06	12.53
Merged-chr11-85574646-3	chr11	85574547	85574747	+	865.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 21 of 25)	intron (NM_138681, intron 21 of 25)	145097.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	17.36	10.56	15.4	6.84	7.77	13.17	8.3	8.36	17.9	17.57	10.55	6.89
Merged-chr14-67359231-3	chr14	67359103	67359303	+	865.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045961, intron 3 of 5)	intron (NR_045961, intron 3 of 5)	38539.0	NR_045961	73977.0	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	8.08	7.55	16.54	13.67	8.18	14.11	6.64	11.8	13.77	9.54	12.06	7.21
Merged-chr4-144898176-3	chr4	144898041	144898241	+	865.888916	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	5004.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.44	1.26	1.14	1.61	3.27	6.59	4.32	15.73	6.88	0.5	7.54	3.45
Merged-chr1-40324532-3	chr1	40324439	40324639	+	865.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133193)	promoter-TSS (NM_133193)	-50.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	8.88	7.29	13.69	7.24	16.77	11.92	10.63	13.01	14.75	27.62	23.62	12.84
Merged-chr8-40424242-2	chr8	40424193	40424393	+	865.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178395, intron 1 of 12)	CpG	478.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	5.65	6.29	7.99	8.85	7.36	14.42	5.65	10.91	2.36	1.51	3.52	3.45
Merged-chr1-132391779-3	chr1	132391674	132391874	+	865.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178874)	promoter-TSS (NM_178874)	-388.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	16.96	13.58	17.11	9.65	13.09	18.81	10.96	23.07	11.8	7.53	15.58	8.46
Merged-chr1-93115338-3	chr1	93115243	93115443	+	865.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13469.0	NM_001110315	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	7.67	12.07	16.54	26.14	11.45	6.9	10.3	13.37	15.54	16.57	14.57	5.33
Merged-chr11-76605833-3	chr11	76605744	76605944	+	865.8388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-28105.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	14.13	10.06	6.85	16.89	9.82	22.89	19.6	12.42	25.18	14.56	12.56	20.36
Merged-chr17-27032999-2	chr17	27032893	27033093	+	865.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027544, intron 4 of 5)	intron (NM_027544, intron 4 of 5)	3734.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.25	3.77	10.84	1.21	6.95	10.35	5.98	6.11	16.52	14.06	9.55	3.76
Merged-chr9-7880182-3	chr9	7880071	7880271	+	865.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-7001.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	2.42	13.33	15.97	8.85	11.86	12.54	1.33	0.95	38.35	17.57	25.63	5.95
Merged-chr6-39463075-3	chr6	39462912	39463112	+	865.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172477, exon 19 of 19)	3' UTR (NM_172477, exon 19 of 19)	42634.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	4.85	8.8	10.84	4.83	12.27	15.05	11.29	7.91	17.31	18.08	14.57	6.27
Merged-chr3-54316872-1	chr3	54316772	54316972	+	865.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-44235.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.81	0.5	0.0	0.8	9.41	10.98	7.97	9.39	7.08	7.53	12.06	6.27
Merged-chrX-98989792-3	chrX	98989693	98989893	+	865.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52012.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	12.11	13.83	6.85	14.48	15.14	15.99	7.31	17.27	9.64	9.04	27.64	10.34
Merged-chrX-135601848-3	chrX	135601752	135601952	+	865.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3075.0	NM_130888	170722.0	Mm.103373	NM_130888	ENSMUSG00000031410	Nxf7	Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2	nuclear RNA export factor 7	protein-coding	11.71	15.34	7.99	16.09	7.77	15.37	2.33	10.88	24.39	5.02	21.1	14.1
Merged-chr10-15321739-1	chr10	15321639	15321839	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-470038.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	1.62	0.25	3.42	3.22	17.18	8.47	10.63	22.79	4.72	5.02	5.02	3.76
Merged-chr5-72803043-1	chr5	72802943	72803143	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-50266.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	1.21	1.26	0.0	0.4	14.73	9.09	10.3	11.16	6.29	5.52	2.51	1.88
Merged-chr10-79798402-2	chr10	79798285	79798485	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023128, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	4813.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	10.5	4.78	3.99	4.83	14.32	8.15	10.96	14.22	14.95	11.55	10.05	7.21
Merged-chr6-101545798-1	chr6	101545698	101545898	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-167901.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	4.04	2.77	0.0	2.01	13.5	5.96	10.96	10.96	8.26	2.51	5.02	2.82
Merged-chr14-13356183-3	chr14	13356084	13356284	+	865.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71404.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	6.46	12.07	7.99	12.87	27.0	25.09	15.61	22.65	29.9	15.57	25.63	14.72
Merged-chr9-57708560-3	chr9	57708473	57708673	+	865.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153799)	promoter-TSS (NM_153799)	4.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	14.54	16.35	7.42	14.48	11.45	16.93	6.31	13.04	11.6	20.08	13.57	17.23
Merged-chr12-91769618-3	chr12	91769534	91769734	+	865.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	16802.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.08	6.04	14.83	20.51	9.0	9.09	4.65	8.41	16.52	12.05	13.06	9.4
Merged-chr1-154258792-2	chr1	154258687	154258887	+	865.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-1881.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	2.02	3.52	9.13	3.22	13.09	21.32	20.59	18.73	10.03	13.05	14.07	9.71
Merged-chr14-62231230-3	chr14	62231134	62231334	+	865.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61745.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	10.09	4.78	22.82	14.08	15.14	11.29	16.28	20.02	13.37	18.08	29.14	6.89
Merged-chr5-31194057-3	chr5	31193930	31194130	+	865.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	726.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	13.33	13.33	12.55	0.8	9.0	19.44	13.95	16.88	15.34	15.06	11.56	9.08
Merged-chr8-83773342-1	chr8	83773242	83773442	+	865.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-32031.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.85	3.02	1.71	2.41	10.64	9.72	3.65	10.79	2.95	2.01	4.02	1.57
Merged-chr2-103504614-3	chr2	103504494	103504694	+	865.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19441.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	16.15	5.03	7.99	26.55	13.09	9.09	5.31	16.32	15.34	14.06	11.05	10.02
Merged-chr15-6396132-3	chr15	6396037	6396237	+	865.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	9389.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	14.54	13.83	11.98	3.22	14.32	22.89	10.3	10.37	12.39	14.56	15.07	2.51
Merged-chr8-126542324-1	chr8	126542224	126542424	+	865.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51112.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.06	2.26	6.28	6.84	9.0	2.2	6.98	11.21	6.1	6.03	8.04	9.08
Merged-chr15-64128088-2	chr15	64127977	64128177	+	865.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-67629.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	16.96	10.56	10.27	13.27	13.91	6.27	7.97	12.64	8.06	4.52	6.03	4.39
Merged-chr2-92185329-5	chr2	92185162	92185362	+	865.657166	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109691)	promoter-TSS (NM_001109691)	-221.0	NM_001109691	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	14.94	17.1	11.41	8.85	10.64	25.71	8.64	9.31	30.68	13.56	22.61	16.29
Merged-chr7-128633370-3	chr7	128633270	128633470	+	865.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	22005.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	9.29	9.81	11.98	11.26	9.41	14.42	4.32	11.52	33.24	15.06	17.59	15.66
Merged-chr4-115784975-3	chr4	115784848	115785048	+	865.6000369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181040, exon 1 of 9)	5' UTR (NM_181040, exon 1 of 9)	134.0	NM_181040	230649.0	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	6.86	10.06	6.28	9.65	9.0	15.05	11.63	9.25	18.69	12.55	18.09	11.59
Merged-chr4-11989497-2	chr4	11989396	11989596	+	865.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	22922.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.81	7.8	6.85	6.44	11.45	12.86	10.63	14.92	12.78	7.53	5.02	7.21
Merged-chr9-89228309-3	chr9	89228203	89228403	+	865.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	L1MB2|LINE|L1	16919.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	12.52	9.81	18.25	20.11	12.68	20.07	19.6	18.59	18.49	18.58	17.59	7.83
Merged-chr7-30336595-3	chr7	30336497	30336697	+	865.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14222.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	16.15	11.07	20.54	11.26	9.0	19.13	5.31	13.54	17.11	11.05	16.58	21.93
Merged-chr17-78989156-3	chr17	78989032	78989232	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171004, intron 2 of 18)	intron (NM_001171004, intron 2 of 18)	19373.0	NM_001171005	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	13.33	5.53	12.55	12.07	31.91	42.96	51.82	61.15	8.65	6.03	20.1	6.89
Merged-chr1-167349335-3	chr1	167349245	167349445	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	-646.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	4.85	7.8	5.13	10.86	6.55	15.05	12.62	2.69	17.51	13.56	21.1	6.89
Merged-chr9-83576117-3	chr9	83576012	83576212	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	27774.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	10.09	10.31	5.7	7.24	11.86	14.42	20.93	21.81	9.44	10.54	18.09	11.9
Merged-chr6-87842889-3	chr6	87842793	87842993	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4134.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	14.13	11.82	15.97	12.47	14.73	13.8	3.32	14.58	13.18	11.55	8.04	9.71
Merged-chr11-88235560-3	chr11	88235460	88235660	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31172.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	12.92	4.53	7.99	3.62	10.23	8.15	7.64	8.61	15.54	21.09	15.58	10.02
Merged-chr5-129501314-3	chr5	129501228	129501428	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172276)	promoter-TSS (NM_172276)	97.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	21.4	10.82	15.97	18.5	11.05	16.93	9.63	14.36	10.23	12.55	14.07	14.1
Merged-chr4-70578417-2	chr4	70578315	70578515	+	865.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-43487.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	8.08	5.03	9.13	9.65	12.27	7.21	9.63	11.89	10.62	4.52	17.59	15.04
Merged-chr11-117970059-3	chr11	117969939	117970139	+	865.538879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	-673.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	11.31	15.09	19.4	12.07	9.41	12.54	3.99	8.66	19.87	17.07	13.57	9.08
Merged-chr11-84828329-2	chr11	84828250	84828450	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	653.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	8.48	5.79	12.55	0.8	4.5	10.35	6.98	6.64	13.18	5.02	8.54	7.52
Merged-chr7-46987698-2	chr7	46987516	46987716	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10984.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.25	3.77	0.0	6.84	1.64	5.02	4.32	10.35	1.38	14.56	3.01	6.27
Merged-chr13-102665759-1	chr13	102665659	102665859	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27788.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.42	4.02	3.99	7.64	8.59	2.82	3.99	5.94	11.01	7.03	8.54	5.01
Merged-chr13-41515946-3	chr13	41515871	41516071	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28611.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.46	8.05	13.69	13.27	11.45	9.72	4.32	12.14	17.7	20.59	7.54	10.34
Merged-chr8-83144392-2	chr8	83144273	83144473	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20979.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	9.29	8.05	19.4	8.85	16.77	12.54	13.29	19.79	1.57	1.51	1.51	3.76
Merged-chr5-139285538-3	chr5	139285426	139285626	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32029.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	10.09	10.31	14.26	6.44	19.23	16.93	8.97	14.64	13.57	17.57	12.06	13.16
Merged-chr8-40598500-2	chr8	40598378	40598578	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 3 of 13)	intron (NM_001040699, intron 3 of 13)	36314.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.23	6.79	3.99	2.82	4.09	3.14	5.65	4.29	15.34	16.07	20.6	14.41
Merged-chr14-122608505-2	chr14	122608394	122608594	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	74166.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	8.08	4.53	8.56	11.66	6.95	3.76	7.97	21.31	11.01	3.51	15.07	11.28
Merged-chr7-99539485-3	chr7	99539329	99539529	+	865.4761960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3943.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	11.71	5.53	15.4	4.83	4.91	10.35	13.62	6.2	12.19	8.03	7.03	3.13
Merged-chr8-85013424-3	chr8	85013324	85013524	+	865.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_052011, exon 2 of 10)	non-coding (NR_052011, exon 2 of 10)	984.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	12.11	8.8	9.13	17.7	12.68	11.92	5.98	9.03	16.72	7.03	16.58	8.77
Merged-chr2-5801465-3	chr2	5801372	5801572	+	865.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133837, intron 10 of 12)	intron (NM_133837, intron 10 of 12)	-43562.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	14.94	6.04	9.13	17.7	22.5	6.9	21.59	25.74	11.41	6.03	19.09	8.77
Merged-chr19-6288198-3	chr19	6288111	6288311	+	865.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	11315.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	24.23	18.86	11.98	8.04	11.45	21.95	6.31	2.97	10.42	14.56	15.58	5.64
Merged-chr11-23659083-3	chr11	23658977	23659177	+	865.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-6597.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	9.29	7.29	30.23	22.52	18.41	17.56	47.5	67.15	14.16	12.05	13.57	14.72
Merged-chr8-70695886-3	chr8	70695775	70695975	+	865.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1864.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	10.5	10.06	15.4	8.04	8.18	12.86	9.3	16.09	21.24	15.57	19.09	9.4
Merged-chr7-37490505-3	chr7	37490409	37490609	+	865.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172385, intron 5 of 5)	intron (NM_172385, intron 5 of 5)	279243.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	14.54	17.36	10.27	15.28	9.82	20.38	9.3	14.47	27.14	11.55	12.06	11.9
Merged-chr5-104459585-3	chr5	104459474	104459674	+	865.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008861, exon 1 of 15)	5' UTR (NM_008861, exon 1 of 15)	117.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	12.92	13.83	10.27	14.88	9.0	12.54	17.94	23.24	15.54	9.04	17.08	18.48
Merged-chr13-32801043-3	chr13	32800948	32801148	+	865.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-982.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	14.54	10.56	14.83	10.46	15.55	13.17	10.63	13.26	20.46	22.59	28.14	7.52
Merged-chr14-103550649-3	chr14	103550549	103550749	+	865.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 8 of 30)	LTR55|LTR|ERVL?	37308.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	10.5	9.81	7.99	6.44	9.41	17.87	6.98	16.91	16.33	17.57	14.07	10.34
Merged-chr12-110841789-2	chr12	110841693	110841893	+	865.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	764.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	10.5	5.53	17.11	14.88	13.09	4.7	8.64	19.96	6.49	7.53	9.04	15.66
Merged-chr12-111676528-2	chr12	111676432	111676632	+	865.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1573.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	1.21	1.76	4.56	0.8	15.96	10.66	6.64	10.29	15.74	15.06	18.09	10.02
Merged-chr4-48076865-2	chr4	48076762	48076962	+	865.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	25616.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.08	3.02	11.41	4.42	5.32	11.6	9.97	11.55	14.75	14.06	19.6	8.77
Merged-chr4-154189138-2	chr4	154189026	154189226	+	865.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	18413.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	21.8	8.55	21.11	34.19	12.68	9.09	9.3	15.17	7.28	13.05	10.05	8.46
Merged-chr7-101563205-1	chr7	101563105	101563305	+	865.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-2340.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.25	0.66	0.48	19.67	12.05	11.56	6.27
Merged-chr17-35195438-3	chr17	35195312	35195512	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105939)	TTS (NR_105939)	440.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	15.34	23.14	15.4	10.05	12.68	38.57	8.64	7.49	14.16	15.57	4.02	3.76
Merged-chr5-88500058-3	chr5	88499961	88500161	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12086.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	5.25	7.04	17.11	12.07	11.05	11.29	2.66	12.95	30.29	25.61	16.08	16.92
Merged-chr13-12462012-1	chr13	12461912	12462112	+	865.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018886)	promoter-TSS (NM_018886)	-274.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	4.04	4.53	12.55	8.04	16.77	10.98	7.97	22.43	10.82	6.03	13.06	7.52
Merged-chrX-140821703-2	chrX	140821604	140821804	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-8271.0	NM_031381	83555.0	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	2.42	12.32	20.54	15.69	6.14	11.6	17.94	15.64	0.39	1.0	4.02	2.19
Merged-chr15-55388266-3	chr15	55388174	55388374	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 13 of 47)	intron (NM_181277, intron 13 of 47)	80524.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	11.31	5.28	14.26	15.28	18.82	10.03	18.6	20.94	14.55	23.1	31.15	7.83
Merged-chr2-45200784-1	chr2	45200684	45200884	+	865.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83342.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.85	2.01	2.28	5.63	10.64	14.74	1.99	7.4	9.83	11.05	7.03	7.21
Merged-chr5-111141660-3	chr5	111141544	111141744	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137500.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	10.09	13.33	10.27	13.67	10.23	9.72	6.64	11.86	18.29	18.08	23.11	8.46
Merged-chr9-60832914-1	chr9	60832814	60833014	+	865.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	L1MB2|LINE|L1	38472.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	5.25	6.79	6.85	7.24	11.05	5.96	6.64	9.84	5.9	1.0	4.52	2.51
Merged-chr10-117629445-3	chr10	117629337	117629537	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027468)	promoter-TSS (NM_027468)	-63.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	11.71	2.26	15.97	8.85	10.23	15.37	7.31	16.79	15.14	4.02	13.06	16.29
Merged-chr17-5941531-3	chr17	5941401	5941601	+	865.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001113353, exon 1 of 27)	exon (NM_001113353, exon 1 of 27)	221.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	14.54	9.81	12.55	6.44	13.5	14.42	6.64	12.0	14.95	16.57	18.59	8.77
Merged-chr8-71633351-3	chr8	71633224	71633424	+	865.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-2218.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	14.54	7.55	6.85	3.62	18.41	12.23	8.97	11.66	16.72	9.04	25.63	13.78
Merged-chr15-58344084-3	chr15	58343984	58344184	+	865.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19915.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	10.5	4.28	15.97	18.9	19.64	7.84	21.26	15.56	12.98	19.58	24.62	15.98
Merged-chr8-105283304-3	chr8	105283207	105283407	+	865.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166394, exon 5 of 7)	exon (NM_001166394, exon 5 of 7)	6221.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	8.08	13.33	13.12	17.7	24.14	15.68	9.3	15.53	24.19	9.54	19.09	9.71
Merged-chr7-99173072-2	chr7	99172966	99173166	+	865.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026384, intron 1 of 7)	intron (NM_026384, intron 1 of 7)	9647.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	9.69	9.06	3.42	10.86	10.64	15.05	1.33	10.51	2.75	5.52	1.0	1.88
Merged-chr9-44966996-2	chr9	44966909	44967109	+	865.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1409.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	11.31	4.53	9.7	6.84	11.05	10.98	3.99	6.98	14.16	11.55	17.59	15.35
Merged-chr10-62503357-5	chr10	62503229	62503429	+	865.238098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm2|SINE|B2	4428.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	10.9	7.29	8.56	5.23	6.55	5.64	8.3	4.21	9.05	8.03	12.06	9.4
Merged-chr4-128728623-3	chr4	128728530	128728730	+	865.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1059.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	10.9	11.82	11.41	10.46	14.32	8.47	6.98	12.17	26.55	16.07	35.17	15.98
Merged-chr13-101801507-3	chr13	101801450	101801650	+	865.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33333.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	10.9	8.8	10.27	11.66	9.0	7.21	14.62	16.07	8.26	9.54	9.55	12.84
Merged-chr19-34244237-1	chr19	34244137	34244337	+	865.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007392, intron 7 of 8)	intron (NM_007392, intron 7 of 8)	11136.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	6.06	6.54	8.56	4.83	6.14	4.7	1.99	3.28	24.78	14.56	20.1	17.86
Merged-chr4-40242092-2	chr4	40241990	40242190	+	865.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-2265.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	5.25	4.53	2.28	4.02	17.59	8.15	10.3	8.05	17.7	11.55	17.59	8.46
Merged-chr2-70091952-3	chr2	70091840	70092040	+	865.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177376, intron 2 of 34)	RLTR14|LTR|ERV1	52814.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	13.73	7.04	22.82	28.15	22.91	35.75	26.57	26.38	12.0	13.05	20.1	10.96
Merged-chr5-3381966-3	chr5	3381880	3382080	+	865.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	L1MB7|LINE|L1	38087.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	11.71	7.29	26.81	9.65	11.05	16.31	13.29	16.65	22.03	13.56	27.64	10.65
Merged-chr2-160060271-3	chr2	160060183	160060383	+	865.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43630.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	9.69	7.04	8.56	7.24	12.27	9.72	5.65	16.12	9.83	23.1	28.64	5.95
Merged-chr10-82985018-3	chr10	82984972	82985172	+	865.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021439)	promoter-TSS (NM_021439)	-425.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	15.75	7.04	15.97	9.65	21.27	15.68	11.96	13.96	13.18	10.04	10.05	11.59
Merged-chr13-59510157-3	chr13	59510064	59510264	+	865.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	34287.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	15.75	5.28	15.4	6.44	10.64	5.96	2.66	10.77	16.13	16.57	13.06	8.46
Merged-chr18-84086624-3	chr18	84086496	84086696	+	865.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081300)	promoter-TSS (NM_001081300)	-34.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	14.94	5.79	7.42	10.46	13.5	13.17	13.29	14.16	13.57	16.57	15.58	13.16
Merged-chr4-9073975-3	chr4	9073879	9074079	+	865.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-195314.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	12.52	5.79	7.99	8.04	15.55	29.16	31.56	35.55	24.98	32.13	46.23	24.12
Merged-chr3-27202059-3	chr3	27201837	27202037	+	865.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	18933.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	12.11	6.54	3.99	8.45	11.86	5.96	7.64	26.38	11.21	12.05	13.06	10.96
Merged-chr12-32305900-3	chr12	32305791	32305991	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-72898.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	8.48	14.84	11.98	0.8	11.45	34.49	10.96	17.05	20.85	28.62	23.11	10.65
Merged-chr19-40818923-3	chr19	40818836	40819036	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12343.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	16.56	15.85	14.83	17.7	10.64	17.87	14.95	26.44	13.57	11.05	13.57	14.72
Merged-chr3-51270627-3	chr3	51270518	51270718	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6143.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	10.9	5.53	2.28	12.47	12.27	10.35	11.29	10.09	17.51	9.04	18.59	10.02
Merged-chr7-28380304-3	chr7	28380237	28380437	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1109.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	19.79	7.29	13.12	6.44	18.82	5.64	8.3	17.94	13.77	13.56	18.09	8.77
Merged-chr16-30123463-3	chr16	30123364	30123564	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	58107.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	12.11	13.33	18.25	22.12	10.64	24.15	18.27	16.79	13.57	10.54	17.59	12.84
Merged-chr2-158176529-3	chr2	158176434	158176634	+	865.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-15474.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	12.11	5.03	14.83	8.45	16.77	10.35	16.61	14.58	13.57	10.04	15.58	12.22
Merged-chr9-70367146-3	chr9	70367061	70367261	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 19 of 27)	intron (NM_181072, intron 19 of 27)	38592.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	17.36	5.53	13.69	20.51	15.14	15.99	9.63	25.32	15.93	8.54	23.62	8.46
Merged-chr4-134094132-3	chr4	134094040	134094240	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	933.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	24.63	17.36	17.68	16.49	4.91	7.84	3.65	4.57	35.99	30.63	32.16	15.35
Merged-chr4-134273558-1	chr4	134273458	134273658	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13695.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	9.69	4.02	3.42	5.63	7.36	4.7	4.32	8.16	0.98	0.5	0.0	3.13
Merged-chr10-4333561-1	chr10	4333461	4333661	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53914.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	1.21	1.26	1.14	6.03	10.23	1.88	0.33	8.97	2.75	4.52	1.0	4.07
Merged-chr6-83673652-2	chr6	83673548	83673748	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144943, intron 4 of 5)	MLT1I|LTR|ERVL-MaLR	4209.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	7.67	5.79	7.99	8.85	7.36	8.47	13.95	21.84	14.55	10.54	19.09	16.92
Merged-chr4-149863721-1	chr4	149863621	149863821	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89454.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.62	1.26	1.14	3.62	13.5	6.27	6.98	12.73	4.52	3.51	4.02	5.95
Merged-chr10-96075610-3	chr10	96075516	96075716	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134953.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	9.29	9.31	23.96	8.04	17.18	40.76	10.3	22.6	27.73	25.61	30.15	17.54
Merged-chr4-40183091-1	chr4	40182991	40183191	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007386, intron 12 of 20)	intron (NM_007386, intron 12 of 20)	39826.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.63	6.29	0.57	1.61	1.64	8.15	3.65	5.19	6.29	10.54	5.02	6.27
Merged-chrX-14628362-1	chrX	14628262	14628462	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	417214.0	NM_001034100	385328.0	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	7.27	5.53	17.11	17.29	6.95	12.54	9.97	12.42	6.49	4.02	11.56	4.39
Merged-chr6-8494608-3	chr6	8494501	8494701	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14560.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	5.65	9.56	11.98	9.25	9.0	8.78	5.31	10.63	23.8	19.08	18.09	8.46
Merged-chr17-24206025-1	chr17	24205925	24206125	+	865.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-463.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	10.9	4.02	1.71	9.65	6.55	7.21	2.66	7.12	12.59	5.02	11.56	7.83
Merged-chr12-76377329-2	chr12	76377225	76377425	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7059.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	10.5	5.03	7.42	4.02	6.14	11.92	3.99	10.71	11.8	14.06	9.55	7.83
Merged-chr2-83705949-1	chr2	83705849	83706049	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-18448.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	8.08	5.53	7.99	12.07	11.45	11.29	20.59	16.32	5.31	6.03	8.54	3.45
Merged-chr3-158076832-3	chr3	158076740	158076940	+	864.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40158.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	4.85	9.31	23.39	10.46	11.05	13.17	3.65	9.45	14.75	21.09	19.09	15.35
Merged-chr11-22780399-3	chr11	22780302	22780502	+	864.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79333.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	12.52	13.08	12.55	22.52	14.32	13.17	9.3	17.83	12.59	12.05	18.59	7.83
Merged-chr15-100060582-3	chr15	100060484	100060684	+	864.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	21920.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	31.09	21.88	34.23	16.09	14.73	12.86	12.95	11.75	34.03	11.05	13.06	10.02
Merged-chr14-56813691-3	chr14	56813587	56813787	+	864.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	1698.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	10.5	7.8	3.42	4.83	8.18	18.5	7.97	7.82	18.49	20.08	17.59	12.84
Merged-chr6-52698196-3	chr6	52698135	52698335	+	864.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15494.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	6.46	17.1	3.42	11.26	4.91	15.37	9.97	4.74	18.1	18.58	15.07	12.53
Merged-chr2-129539362-2	chr2	129539265	129539465	+	864.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2763.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	10.09	10.56	17.11	14.88	5.73	7.53	0.0	1.54	8.06	14.56	18.09	11.59
Merged-chr9-66882067-3	chr9	66881983	66882183	+	864.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37622.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	11.71	5.03	14.83	10.86	21.27	17.56	21.59	26.02	14.75	14.06	21.61	1.88
Merged-chr6-3182923-3	chr6	3182832	3183032	+	864.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105587.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	10.5	16.6	18.83	11.26	29.46	23.83	51.15	23.24	2.36	5.02	3.01	6.89
Merged-chr4-148045018-3	chr4	148044912	148045112	+	864.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027809, intron 4 of 12)	intron (NR_027809, intron 4 of 12)	3823.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	7.67	7.29	18.25	13.67	9.82	8.15	8.64	13.71	18.29	15.57	19.09	13.78
Merged-chr12-111376900-2	chr12	111376855	111377055	+	864.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	763.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	9.29	11.57	9.7	6.03	9.0	12.23	7.97	4.12	15.14	6.53	8.54	15.66
Merged-chr9-104233989-3	chr9	104233885	104234085	+	864.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28945.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	12.92	6.29	23.39	21.72	18.82	16.31	8.97	22.88	30.68	21.59	19.6	32.58
Merged-chr12-112870943-2	chr12	112870829	112871029	+	864.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10013.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	2.42	0.25	3.42	0.8	4.09	10.98	8.3	8.52	7.47	4.02	12.06	3.76
Merged-chr14-93650251-2	chr14	93650162	93650362	+	864.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	240407.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.02	1.51	1.14	8.45	10.23	8.78	4.65	12.59	20.46	13.05	28.14	12.53
Merged-chr16-57558394-3	chr16	57558289	57558489	+	864.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9147.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	23.02	13.83	5.7	7.24	22.91	34.49	19.93	15.2	28.32	16.07	8.04	5.64
Merged-chr16-91852992-3	chr16	91852893	91853093	+	864.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 21 of 28)	L2b|LINE|L2	78637.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	9.69	11.57	9.7	13.27	13.5	15.99	17.27	25.57	9.05	13.56	21.1	9.4
Merged-chr7-79846751-3	chr7	79846664	79846864	+	864.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008486, intron 1 of 20)	intron (NM_008486, intron 1 of 20)	1446.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	10.9	11.07	24.53	24.94	10.64	10.03	14.62	10.82	18.88	9.54	19.09	13.16
Merged-chr2-60217779-1	chr2	60217679	60217879	+	864.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	7843.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	7.27	6.29	6.85	10.46	11.05	10.35	12.62	14.94	5.7	12.05	10.05	3.13
Merged-chrX-12078795-3	chrX	12078686	12078886	+	864.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	1767.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	14.94	11.82	14.83	10.46	21.68	17.25	13.62	9.56	18.88	21.09	17.08	9.08
Merged-chr2-145881249-3	chr2	145881164	145881364	+	864.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-21977.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.63	5.03	12.55	11.26	12.68	5.64	11.29	10.6	12.19	13.56	30.15	17.86
Merged-chr14-48121318-1	chr14	48121218	48121418	+	864.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	CpG	449.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	5.65	6.04	5.7	12.07	11.05	6.9	20.26	9.28	2.16	5.02	3.01	3.76
Merged-chr6-70709574-1	chr6	70709474	70709674	+	864.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82601.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.44	3.52	2.28	7.64	9.0	10.03	3.99	7.37	1.18	4.52	7.03	6.58
Merged-chr5-64296581-3	chr5	64296490	64296690	+	864.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	66233.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	25.44	11.82	20.54	8.85	21.68	15.37	21.59	29.66	13.37	11.05	13.57	5.33
Merged-chr11-101553788-3	chr11	101553686	101553886	+	864.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008676, intron 1 of 23)	intron (NM_008676, intron 1 of 23)	1132.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	14.94	8.8	5.13	10.86	18.82	21.01	8.97	10.6	19.08	8.54	5.53	10.34
Merged-chr9-119103119-3	chr9	119103032	119103232	+	864.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	654.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	18.98	8.05	13.69	24.94	11.86	13.48	14.95	23.3	17.51	15.06	40.2	18.8
Merged-chr2-150218034-3	chr2	150217957	150218157	+	864.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-42.0	NM_001142411	245174.0	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	10.9	10.82	7.99	17.29	10.64	5.02	5.31	11.55	15.74	15.57	30.65	15.04
Merged-chr1-72412875-2	chr1	72412763	72412963	+	864.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105442.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	4.04	2.52	2.85	2.41	5.73	6.27	11.96	8.07	17.11	15.57	10.55	6.27
Merged-chr5-99213958-2	chr5	99213839	99214039	+	864.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38988.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.69	12.83	3.99	2.01	6.95	10.98	0.0	6.39	6.29	13.05	3.52	3.45
Merged-chr5-111035668-3	chr5	111035580	111035780	+	864.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	31536.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	16.15	12.32	26.24	24.94	10.64	11.6	11.63	18.62	10.23	8.03	11.05	6.58
Merged-chr14-57417357-3	chr14	57417271	57417471	+	864.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-6700.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	7.67	8.3	5.7	8.04	11.86	10.03	7.64	13.26	16.92	8.03	18.09	8.14
Merged-chr1-190927923-3	chr1	190927818	190928018	+	864.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-572.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	9.29	12.58	13.12	14.48	24.14	22.26	18.27	36.48	10.82	14.56	18.09	9.71
Merged-chr2-145861778-1	chr2	145861678	145861878	+	864.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-41463.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.23	1.51	2.28	4.02	4.91	10.35	10.96	15.53	1.97	6.03	11.56	3.13
Merged-chr4-126017902-3	chr4	126017855	126018055	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6704.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	9.29	6.54	7.99	5.23	13.09	14.74	11.29	13.46	24.39	16.07	19.6	19.42
Merged-chr10-119050484-3	chr10	119050387	119050587	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152787)	promoter-TSS (NR_152787)	12.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.46	4.53	11.41	9.65	23.73	16.62	14.62	30.48	28.72	20.08	8.54	13.16
Merged-chr11-58636767-3	chr11	58636679	58636879	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3686.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	9.69	6.79	12.55	5.23	24.96	16.93	7.31	13.43	21.64	17.57	18.09	7.52
Merged-chr13-100600540-3	chr13	100600445	100600645	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178410, exon 4 of 6)	exon (NM_178410, exon 4 of 6)	16399.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	7.67	8.3	9.13	2.01	47.46	18.81	17.61	30.93	40.12	28.12	42.21	22.56
Merged-chr4-99937462-2	chr4	99937366	99937566	+	864.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	8015.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	4.85	9.56	8.56	10.05	13.09	7.84	11.29	12.56	4.13	3.51	9.55	3.76
Merged-chr5-115514914-2	chr5	115514809	115515009	+	864.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8233.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	1.62	4.53	6.85	0.4	7.36	9.72	12.29	9.73	4.92	7.03	14.07	5.64
Merged-chr1-132390848-1	chr1	132390748	132390948	+	864.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	-530.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.04	3.77	3.99	4.83	11.86	6.9	8.3	8.75	4.13	6.53	3.01	6.27
Merged-chr11-86836557-2	chr11	86836464	86836664	+	864.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28904.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	6.86	3.52	1.71	2.01	9.82	12.23	5.98	9.36	15.54	16.57	18.59	13.47
Merged-chr13-54818970-3	chr13	54818847	54819047	+	864.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29542.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	14.54	18.11	14.83	15.28	9.82	13.48	8.97	8.97	9.64	21.09	15.07	6.89
Merged-chr1-186508577-2	chr1	186508479	186508679	+	864.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50102.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	11.71	9.56	17.11	22.93	7.36	6.59	16.61	13.51	5.51	7.03	9.04	6.58
Merged-chr13-42150111-3	chr13	42150042	42150242	+	864.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	98121.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.88	10.56	20.54	17.29	26.59	8.15	31.22	26.86	13.96	21.09	20.1	13.16
Merged-chr15-99702485-3	chr15	99702390	99702590	+	864.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031842, exon 1 of 13)	exon (NM_031842, exon 1 of 13)	203.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	13.73	11.82	4.56	10.05	13.91	13.8	10.96	12.0	9.44	16.57	16.08	9.4
Merged-chr2-165317565-3	chr2	165317469	165317669	+	864.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1218.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	10.09	5.79	16.54	18.1	27.41	10.98	18.6	38.8	12.39	8.03	21.61	12.53
Merged-chr10-67003439-4	chr10	67003364	67003564	+	864.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1611.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.04	10.82	8.56	7.24	5.32	9.41	6.98	2.86	5.51	3.51	3.52	4.39
Merged-chr4-102646467-2	chr4	102646383	102646583	+	864.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56640.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	9.69	9.81	3.42	8.45	11.86	5.64	13.62	11.72	17.9	20.08	18.59	12.22
Merged-chr7-19235268-3	chr7	19235153	19235353	+	864.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207525, intron 1 of 1)	ID_B1|SINE|B4	6864.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	16.96	11.32	17.68	7.64	16.36	8.78	13.29	12.87	10.03	15.06	24.62	8.46
Merged-chr5-43113591-3	chr5	43113485	43113685	+	864.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119878.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.25	9.56	18.25	14.08	11.86	7.21	11.63	13.09	13.96	11.05	16.58	14.1
Merged-chr5-31880626-3	chr5	31880525	31880725	+	864.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	MTD|LTR|ERVL-MaLR	182575.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	7.67	11.07	13.69	11.26	10.64	19.13	8.97	11.64	14.95	22.09	17.08	13.16
Merged-chr10-20054085-2	chr10	20053994	20054194	+	864.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-94826.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	3.23	8.3	3.42	18.1	6.55	17.25	42.52	38.69	14.75	10.54	9.04	6.58
Merged-chr5-18009350-3	chr5	18009234	18009434	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	46764.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.65	4.02	10.27	12.87	10.64	11.29	7.31	14.83	18.1	22.09	22.61	18.8
Merged-chr10-69247537-3	chr10	69247437	69247637	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	34343.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.46	7.29	29.66	22.93	13.91	12.86	10.3	17.83	15.93	13.05	16.58	15.98
Merged-chr5-74672914-1	chr5	74672814	74673014	+	864.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159578, intron 1 of 12)	AmnSINE2|SINE|Deu	4958.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.01	0.0	0.8	6.95	7.21	6.98	9.98	0.0	0.0	1.0	0.0
Merged-chr9-40320211-2	chr9	40320104	40320304	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1119.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.25	4.53	7.99	4.02	6.55	3.14	7.64	4.88	1.77	1.0	2.51	4.39
Merged-chr5-90747343-3	chr5	90747256	90747456	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11942.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	17.36	4.53	10.27	14.48	9.82	10.03	11.96	19.4	11.8	15.57	22.11	17.23
Merged-chr12-4840262-3	chr12	4840156	4840356	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	1339.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	22.61	8.05	14.26	12.47	13.5	12.86	8.3	17.83	11.21	13.05	8.04	10.65
Merged-chr11-50915812-2	chr11	50915707	50915907	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294323, intron 1 of 5)	CpG	369.0	NM_178447	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	9.29	12.58	10.27	10.05	11.45	8.47	15.28	13.09	7.47	8.54	9.55	10.96
Merged-chr18-64847094-2	chr18	64846994	64847194	+	864.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40662.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.85	5.53	5.7	6.03	10.23	10.03	6.98	9.36	14.95	13.05	10.05	14.72
Merged-chr15-95810647-3	chr15	95810544	95810744	+	864.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	19428.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	8.48	13.33	12.55	18.5	11.86	8.15	4.65	9.06	12.19	1.51	17.08	15.04
Merged-chr8-41376177-3	chr8	41376086	41376286	+	864.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1489.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	14.54	5.28	9.13	16.89	22.5	15.68	11.29	15.73	36.39	12.55	33.67	20.99
Merged-chr4-6427579-3	chr4	6427486	6427686	+	864.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	26685.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	13.33	6.54	14.83	16.09	13.91	12.23	6.98	27.98	14.95	23.6	23.62	7.83
Merged-chr1-135267739-3	chr1	135267634	135267834	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 5 of 9)	intron (NM_001159624, intron 5 of 9)	-9262.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	23.42	15.09	18.83	16.89	13.91	16.31	16.28	13.77	7.67	9.54	12.56	7.21
Merged-chr3-84313223-3	chr3	84313113	84313313	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-8438.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	8.48	7.29	6.85	7.24	10.64	15.99	7.31	13.93	18.1	13.05	31.15	11.9
Merged-chr5-52742282-3	chr5	52742185	52742385	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	711.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	10.09	8.3	11.41	7.24	14.32	14.11	12.29	11.21	22.23	8.54	19.6	11.59
Merged-chr2-84831842-3	chr2	84831755	84831955	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4834.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	22.61	10.31	25.1	24.94	15.14	25.71	14.95	17.47	22.03	10.54	13.57	14.41
Merged-chr2-71002660-3	chr2	71002576	71002776	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 2 of 9)	intron (NM_145524, intron 2 of 9)	15698.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.25	10.82	8.56	2.41	12.68	26.03	11.63	15.42	14.95	27.11	34.17	15.04
Merged-chr10-93256894-3	chr10	93256808	93257008	+	864.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	54251.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	10.09	9.31	17.11	23.73	17.59	21.01	36.54	23.86	11.6	17.07	16.58	10.65
Merged-chr15-96475632-2	chr15	96475544	96475744	+	864.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14801.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	6.86	3.77	2.85	5.23	13.5	18.19	20.93	16.49	5.11	9.54	13.57	11.9
Merged-chr10-88390614-3	chr10	88390513	88390713	+	864.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	11201.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	5.25	13.83	24.53	17.29	3.68	7.84	5.98	11.55	18.29	12.55	11.56	8.46
Merged-chr11-20732497-2	chr11	20732392	20732592	+	864.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	L1MD2|LINE|L1	9064.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	6.86	5.53	16.54	13.67	23.32	16.31	10.3	17.05	5.9	3.01	10.05	2.51
Merged-chr11-63923654-3	chr11	63923559	63923759	+	864.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1375.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	10.9	15.09	10.84	11.26	10.23	9.72	2.99	10.43	12.19	17.57	18.59	8.77
Merged-chr15-73135154-3	chr15	73135051	73135251	+	864.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 3 of 18)	ORR1B1|LTR|ERVL-MaLR	44739.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	7.67	8.05	15.97	12.07	13.09	6.59	14.62	9.17	18.29	9.54	25.12	11.59
Merged-chr2-170119423-3	chr2	170119339	170119539	+	864.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159683, exon 3 of 7)	exon (NM_001159683, exon 3 of 7)	11781.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	12.92	10.82	5.13	3.22	12.68	11.92	7.64	7.43	21.24	24.1	19.6	2.19
Merged-chr4-133182841-2	chr4	133182741	133182941	+	864.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 2 of 8)	B1F2|SINE|Alu	-12814.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	6.86	6.79	15.97	22.52	17.59	15.99	13.62	33.34	5.9	6.53	4.52	1.57
Merged-chr16-11843642-3	chr16	11843547	11843747	+	864.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-57717.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	10.5	10.82	11.41	12.07	11.05	10.35	16.61	13.51	18.49	15.57	51.76	17.23
Merged-chr1-20940251-2	chr1	20940162	20940362	+	864.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028829)	TTS (NM_028829)	-11364.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	9.29	10.82	15.97	6.84	8.59	7.21	7.31	11.33	4.92	2.51	7.03	1.88
Merged-chr10-63023263-2	chr10	63023133	63023333	+	864.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079824, intron 1 of 9)	CpG	616.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	11.71	8.8	7.99	10.05	9.0	9.09	7.31	7.04	14.95	10.04	14.07	11.9
Merged-chr4-45546081-2	chr4	45545971	45546171	+	864.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-15243.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	1.62	3.52	8.56	4.42	4.91	11.92	4.32	11.24	13.96	12.55	15.07	10.02
Merged-chr1-92975297-1	chr1	92975197	92975397	+	864.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-50.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	10.9	1.51	3.99	4.02	3.68	10.98	7.31	9.14	3.74	5.52	6.53	3.76
Merged-chr15-99116557-3	chr15	99116470	99116670	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10275.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.83	6.29	10.27	14.48	15.96	28.22	43.18	35.19	23.21	24.1	24.62	15.66
Merged-chr19-5636735-3	chr19	5636635	5636835	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-755.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	14.54	9.31	12.55	5.63	11.86	22.89	16.94	3.03	15.14	21.09	9.04	3.76
Merged-chr17-87531775-3	chr17	87531748	87531948	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84913.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	2.83	1.51	4.56	4.83	8.59	8.15	3.99	6.48	12.78	13.56	17.59	12.84
Merged-chr6-59174153-3	chr6	59174042	59174242	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-34728.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	9.29	7.29	29.09	16.89	14.73	9.41	15.94	22.43	10.82	6.53	20.1	9.4
Merged-chr13-37056895-3	chr13	37056799	37056999	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6655.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	12.92	8.55	16.54	15.69	27.41	21.64	15.28	32.58	14.36	11.55	20.6	9.71
Merged-chr3-108226650-3	chr3	108226559	108226759	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008596)	promoter-TSS (NM_008596)	-60.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	9.69	8.8	7.99	6.44	7.36	15.37	7.97	10.91	13.96	13.56	14.07	3.45
Merged-chr18-6137684-3	chr18	6137596	6137796	+	864.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1598.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	18.57	10.31	5.7	14.88	9.82	13.48	12.29	23.92	20.26	12.05	11.56	18.17
Merged-chrX-169319299-3	chrX	169319205	169319405	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008222, intron 2 of 6)	URR1A|DNA|hAT-Charlie	1067.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	11.31	14.09	14.83	17.29	13.09	23.52	10.96	22.68	15.34	17.57	25.12	17.23
Merged-chr11-103374762-3	chr11	103374648	103374848	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11056.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	14.13	7.04	21.11	20.51	29.46	13.8	14.28	35.24	9.83	13.56	13.57	10.96
Merged-chr13-113918229-3	chr13	113918132	113918332	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123724.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	5.25	10.56	12.55	12.47	9.0	4.39	18.27	15.79	15.54	12.55	20.1	18.48
Merged-chr8-69193499-3	chr8	69193420	69193620	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15526.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	6.86	10.06	15.4	13.67	4.5	9.72	5.65	7.82	16.92	18.08	24.62	11.9
Merged-chr2-92004907-1	chr2	92004807	92005007	+	864.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	Charlie9|DNA|hAT-Charlie	19263.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.81	3.02	6.85	0.8	7.77	12.86	8.64	8.16	0.79	3.01	3.52	0.63
Merged-chr4-11077103-2	chr4	11076997	11077197	+	864.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	-892.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	8.48	8.8	15.97	10.86	14.73	5.33	2.33	11.55	7.28	4.52	13.06	3.13
Merged-chr15-40949413-2	chr15	40949292	40949492	+	864.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 3 of 6)	(TTC)n|Simple_repeat|Simple_repeat	-224309.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	4.44	3.27	7.42	1.61	11.45	3.76	5.98	10.15	9.64	12.55	9.55	4.7
Merged-chrX-42058038-2	chrX	42057924	42058124	+	864.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-9812.0	NM_009688	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	5.65	3.27	1.14	8.45	20.86	12.54	12.62	13.82	9.44	21.59	15.07	6.89
Merged-chr11-109650446-3	chr11	109650337	109650537	+	864.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021880)	promoter-TSS (NM_021880)	-484.0	NM_021880	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	20.19	14.34	9.7	19.31	20.46	15.68	10.96	9.67	14.95	12.05	13.57	16.92
Merged-chr1-192536653-3	chr1	192536539	192536739	+	864.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	234580.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	9.69	8.05	18.25	16.09	4.09	15.05	7.97	18.87	14.75	6.03	17.59	11.9
Merged-chr13-73467958-1	chr13	73467858	73468058	+	864.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	575.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.04	11.32	3.99	4.02	13.91	10.66	7.31	10.65	9.05	7.03	7.03	6.58
Merged-chr11-11903623-3	chr11	11903535	11903735	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5491.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	10.09	3.27	19.4	20.91	9.41	9.41	13.29	5.92	20.46	18.08	36.68	23.18
Merged-chr19-12011071-3	chr19	12010959	12011159	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25681.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	10.5	15.34	5.7	13.67	15.55	23.2	7.64	10.82	11.8	11.55	12.56	13.78
Merged-chr4-117218696-3	chr4	117218599	117218799	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	33218.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	16.15	7.29	11.98	12.07	20.05	35.75	25.24	20.61	14.75	18.58	13.06	8.46
Merged-chr9-37257752-3	chr9	37257652	37257852	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2014.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	10.9	14.59	6.85	17.29	26.18	18.5	10.3	26.33	13.77	5.02	12.06	8.77
Merged-chr7-112240931-2	chr7	112240827	112241027	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	15091.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	10.5	7.55	7.99	17.29	10.64	15.37	13.95	21.08	1.97	1.51	1.51	0.31
Merged-chr2-102290229-3	chr2	102290121	102290321	+	864.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103761.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	5.25	6.79	13.12	16.89	10.64	18.5	7.97	11.58	23.41	20.59	22.11	16.92
Merged-chr5-129914213-3	chr5	129914123	129914323	+	864.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359308)	TTS (NM_001359308)	5683.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	12.11	7.55	7.99	4.83	12.68	11.92	15.28	4.63	15.54	24.1	35.68	6.58
Merged-chr2-68862135-3	chr2	68862045	68862245	+	864.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	CpG	704.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	7.27	12.32	16.54	14.08	13.09	15.68	16.61	9.84	13.37	13.05	11.05	5.33
Merged-chr17-8149591-3	chr17	8149496	8149696	+	864.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-1764.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	12.11	18.36	4.56	8.04	8.59	15.99	11.63	4.85	10.42	5.02	3.52	10.65
Merged-chr16-24433625-3	chr16	24433525	24433725	+	864.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-14466.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	12.52	13.58	8.56	14.88	20.86	30.1	25.91	28.85	11.21	11.55	8.54	0.94
Merged-chr16-23104094-3	chr16	23104000	23104200	+	864.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3368.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	6.86	10.82	9.7	6.84	15.14	10.66	14.95	12.93	15.74	15.06	27.13	18.17
Merged-chr9-24499686-3	chr9	24499534	24499734	+	864.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	3506.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	7.67	8.05	11.41	8.85	11.45	7.53	8.3	16.32	12.0	9.04	13.06	11.28
Merged-chr8-57587540-3	chr8	57587435	57587635	+	864.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-64218.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	10.09	12.83	16.54	3.22	14.73	13.48	5.31	12.79	12.78	3.01	4.02	9.08
Merged-chr12-4197196-3	chr12	4197090	4197290	+	864.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 7 of 21)	MTD|LTR|ERVL-MaLR	36775.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	14.13	12.07	23.96	9.65	28.23	18.19	13.95	20.66	17.31	11.05	12.06	10.65
Merged-chr5-99297746-2	chr5	99297643	99297843	+	864.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-44816.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.48	6.29	9.7	6.44	9.0	12.54	15.94	14.69	8.46	15.06	18.09	13.16
Merged-chr7-143180928-3	chr7	143180801	143181001	+	864.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	73647.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	6.86	9.81	13.69	19.31	5.32	7.84	6.31	19.32	15.74	11.05	23.62	11.9
Merged-chr16-84836228-3	chr16	84836115	84836315	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016755)	promoter-TSS (NM_016755)	-590.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	12.52	12.32	14.83	3.62	14.73	10.66	11.63	11.78	7.47	17.57	11.56	10.34
Merged-chr9-71162360-1	chr9	71162260	71162460	+	864.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271843, exon 1 of 6)	exon (NM_001271843, exon 1 of 6)	273.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	3.23	4.78	1.14	5.63	6.55	5.33	1.33	0.59	13.77	12.55	8.04	4.39
Merged-chr8-27086603-1	chr8	27086503	27086703	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	762.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	3.23	3.52	4.56	2.41	4.91	8.47	2.99	8.13	5.7	8.54	9.55	5.33
Merged-chr6-58930137-1	chr6	58930037	58930237	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23011.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.81	0.75	2.28	1.61	4.91	1.25	6.98	8.24	0.2	5.02	2.51	2.51
Merged-chr17-33968688-3	chr17	33968590	33968790	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10101.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	15.34	17.86	7.99	8.04	5.73	23.2	4.65	8.1	15.74	13.05	24.62	13.78
Merged-chr2-167230333-1	chr2	167230233	167230433	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008968, intron 1 of 9)	L1MB5|LINE|L1	10204.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.4	0.5	2.85	4.02	8.59	5.02	7.64	12.17	7.08	8.54	5.53	5.95
Merged-chrX-142537301-1	chrX	142537201	142537401	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143046.0	NM_001358725	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	11.71	4.78	3.42	3.22	13.09	14.74	3.32	3.53	9.44	23.6	8.04	7.21
Merged-chr13-43791469-2	chr13	43791357	43791557	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	6345.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	9.69	4.78	1.71	4.83	15.55	12.86	6.98	10.65	9.24	14.06	6.03	9.71
Merged-chr6-24963957-1	chr6	24963857	24964057	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.23	2.52	4.56	3.22	8.18	7.53	7.31	7.46	9.83	6.03	4.02	4.39
Merged-chr16-17276742-1	chr16	17276642	17276842	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177473, exon 2 of 10)	exon (NM_177473, exon 2 of 10)	442.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	5.25	8.8	2.85	2.41	6.55	11.6	5.65	9.17	7.08	8.03	9.04	9.71
Merged-chr12-80846495-2	chr12	80846411	80846611	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	55979.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.25	5.03	12.55	10.46	5.73	3.45	8.3	12.95	5.11	3.51	7.54	3.13
Merged-chr15-86183641-1	chr15	86183541	86183741	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2087.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.85	2.52	2.28	4.42	6.55	1.57	6.98	4.29	1.97	5.52	3.01	6.27
Merged-chr2-165858297-1	chr2	165858197	165858397	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-124.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.04	8.05	9.13	8.85	8.59	5.64	7.64	5.92	8.26	13.56	15.58	7.83
Merged-chr2-66170538-1	chr2	66170438	66170638	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45745.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	2.42	1.01	3.42	11.26	8.18	6.9	8.97	16.91	5.9	5.02	11.56	4.7
Merged-chr9-61967429-1	chr9	61967329	61967529	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-20630.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	2.83	4.53	5.7	7.64	12.27	3.45	13.29	6.73	3.74	9.04	6.53	4.07
Merged-chr13-95842160-2	chr13	95842051	95842251	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	49771.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	9.69	10.56	15.4	8.45	27.82	29.48	14.95	17.33	8.65	5.02	3.01	5.33
Merged-chr7-75571227-1	chr7	75571127	75571327	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	115693.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.04	1.01	0.0	4.83	10.23	2.82	7.31	9.28	7.67	4.52	5.53	7.52
Merged-chrX-99488256-1	chrX	99488156	99488356	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17521.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	2.42	3.27	1.14	6.03	7.36	3.45	4.65	8.38	7.28	5.52	11.56	4.7
Merged-chr2-165985583-3	chr2	165985449	165985649	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-7088.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.46	9.81	3.42	8.85	4.91	7.84	3.99	7.01	6.69	6.03	16.08	11.28
Merged-chr9-47529814-1	chr9	47529714	47529914	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-356.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	14.54	12.83	4.56	12.07	10.23	9.41	10.3	6.79	11.6	13.56	19.6	12.53
Merged-chr3-87223841-1	chr3	87223741	87223941	+	864.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	39683.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.0	0.75	0.0	0.0	0.0	0.0	0.0	0.0	11.01	6.53	11.56	3.45
Merged-chr10-43910842-1	chr10	43910742	43910942	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_130892, exon 4 of 9)	exon (NM_130892, exon 4 of 9)	9035.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	4.04	5.03	5.13	9.65	12.68	6.9	16.61	10.88	7.08	8.54	9.04	8.46
Merged-chr10-56428007-1	chr10	56427907	56428107	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-3974.0	NR_152769	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	3.23	2.52	1.14	15.28	3.27	8.78	3.65	8.83	3.34	6.03	3.52	6.58
Merged-chr10-50705111-1	chr10	50705011	50705211	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	112442.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.04	1.51	5.7	1.61	2.45	3.76	5.31	7.85	4.72	8.03	2.51	1.88
Merged-chr14-57772633-3	chr14	57772539	57772739	+	863.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3d|LINE|L1	-25550.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	6.86	12.32	15.97	6.84	19.23	15.37	8.97	12.45	22.42	23.1	17.08	7.21
Merged-chr12-116485744-3	chr12	116485651	116485851	+	863.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011215)	promoter-TSS (NM_011215)	31.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	8.48	15.34	14.83	14.88	7.36	6.9	5.65	13.43	30.29	19.58	43.72	15.98
Merged-chr5-89852974-3	chr5	89852902	89853102	+	863.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	30332.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	10.5	4.78	11.98	17.7	13.91	17.56	12.62	33.73	7.08	7.53	26.13	11.59
Merged-chr1-153518791-3	chr1	153518666	153518866	+	863.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028749, intron 7 of 11)	B3|SINE|B2	30948.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	25.84	9.06	14.83	17.7	11.86	14.42	19.93	33.45	24.39	12.05	12.06	12.22
Merged-chr13-82073571-3	chr13	82073471	82073671	+	863.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	290324.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	9.29	21.63	2.85	8.04	9.0	14.42	13.62	11.02	48.19	34.65	41.71	22.87
Merged-chr16-30604260-2	chr16	30604152	30604352	+	863.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4529.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.44	13.08	5.13	3.22	11.86	10.03	11.63	9.5	13.18	8.54	16.08	9.4
Merged-chr1-146967663-3	chr1	146967557	146967757	+	863.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	469970.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	6.06	6.29	13.12	12.87	14.32	6.9	9.63	16.57	16.52	23.6	20.1	8.77
Merged-chr12-80107378-2	chr12	80107279	80107479	+	863.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007564)	TTS (NM_007564)	5634.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	9.29	10.06	15.4	5.23	13.09	15.68	3.65	2.78	6.1	8.03	1.51	2.51
Merged-chr11-118465263-2	chr11	118465160	118465360	+	863.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10265.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	10.9	12.32	9.7	8.45	12.68	9.41	3.32	9.7	4.33	9.04	14.07	2.51
Merged-chr7-126796600-2	chr7	126796502	126796702	+	863.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177308, exon 5 of 9)	exon (NM_001177308, exon 5 of 9)	2576.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	10.09	16.1	14.83	6.84	6.14	15.68	1.66	1.18	14.95	2.01	10.05	7.52
Merged-chr7-97780986-2	chr7	97780868	97781068	+	863.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7573.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	6.86	11.32	6.85	6.84	15.55	12.86	2.66	7.96	19.28	18.08	27.13	7.21
Merged-chr14-76959054-1	chr14	76958954	76959154	+	863.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77563.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	10.5	6.04	3.42	6.03	9.82	12.86	11.29	15.0	0.98	5.02	4.52	1.88
Merged-chr15-64113350-3	chr15	64113251	64113451	+	863.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-52903.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.69	8.55	7.42	6.84	18.0	14.74	3.99	11.1	35.99	28.12	18.59	14.1
Merged-chr1-135740455-3	chr1	135740347	135740547	+	863.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153810, intron 2 of 3)	(CAAAC)n|Simple_repeat|Simple_repeat	11280.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	6.06	13.33	18.25	7.24	9.0	6.27	12.62	6.87	44.84	31.63	30.15	26.0
Merged-chr11-8787824-3	chr11	8787716	8787916	+	863.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123281.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	10.09	16.1	14.83	11.66	20.86	16.62	9.63	23.41	19.87	11.05	11.05	13.16
Merged-chr4-135972637-3	chr4	135972531	135972731	+	863.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-37.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	10.9	9.56	10.84	6.03	9.41	17.87	11.63	10.82	18.1	11.55	18.59	4.7
Merged-chr4-6225473-2	chr4	6225360	6225560	+	863.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34355.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	10.5	2.01	7.42	2.41	2.86	10.03	4.32	7.77	26.36	11.55	16.08	11.9
Merged-chr3-20199135-2	chr3	20199046	20199246	+	863.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23213.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	4.04	5.28	6.28	9.65	4.5	13.8	12.62	13.74	11.21	7.53	14.07	6.89
Merged-chr14-118820225-1	chr14	118820125	118820325	+	863.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	32354.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	6.46	4.02	4.56	4.83	16.77	5.96	10.63	11.58	6.29	2.01	2.51	5.64
Merged-chr11-103003405-3	chr11	103003311	103003511	+	863.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-3490.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	9.69	9.31	3.42	4.83	19.64	15.99	13.29	20.05	14.75	12.55	27.13	7.21
Merged-chr17-64873926-1	chr17	64873826	64874026	+	863.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37855.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	4.04	3.52	10.27	2.41	10.23	10.35	6.64	9.22	3.15	3.51	5.02	7.52
Merged-chr19-5729393-5	chr19	5729307	5729507	+	863.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020491)	TTS (NM_020491)	259.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	12.92	5.53	7.42	0.4	4.09	9.72	4.65	4.68	15.74	12.05	6.53	12.22
Merged-chr7-142462739-3	chr7	142462631	142462831	+	863.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136071, intron 1 of 10)	intron (NM_001136071, intron 1 of 10)	1919.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	27.05	25.66	11.41	2.41	8.18	8.47	5.65	1.57	32.26	39.16	24.12	13.78
Merged-chr11-34008681-5	chr11	34008583	34008783	+	863.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15490.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	1.21	4.53	0.57	6.03	2.86	2.82	4.32	3.11	12.59	9.54	8.04	4.7
Merged-chr8-57433005-3	chr8	57432913	57433113	+	863.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22910.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	7.27	9.81	13.12	11.26	17.18	18.81	19.27	23.61	11.01	14.06	32.16	15.66
Merged-chr1-127219342-3	chr1	127219244	127219444	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	MIRc|SINE|MIR	14358.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	9.29	5.28	16.54	7.64	13.91	14.74	17.94	31.46	61.76	67.78	57.28	41.35
Merged-chr9-3000428-2	chr9	3000311	3000511	+	863.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	38332.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	21.4	12.07	5.7	10.46	12.27	7.53	19.93	0.08	13.77	27.62	24.62	23.49
Merged-chr7-4654690-3	chr7	4654595	4654795	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4255.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	12.11	17.36	2.85	3.62	9.82	12.23	3.32	4.09	9.44	9.04	4.02	5.95
Merged-chr4-145215523-3	chr4	145215427	145215627	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20522.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	7.67	4.28	33.66	17.7	7.77	9.09	30.89	31.15	18.49	23.6	34.67	20.36
Merged-chr12-8359561-1	chr12	8359461	8359661	+	863.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46128.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	2.77	2.28	1.61	0.82	2.2	0.0	1.23	15.34	12.55	8.54	5.95
Merged-chr13-24797798-3	chr13	24797684	24797884	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-3873.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	8.88	8.05	1.71	10.86	4.09	6.27	25.24	20.66	14.55	4.52	22.11	11.9
Merged-chr8-86893816-1	chr8	86893716	86893916	+	863.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8558.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	7.27	1.51	10.84	7.24	17.18	9.09	5.31	7.77	11.01	13.56	6.03	5.64
Merged-chr13-41263790-3	chr13	41263689	41263889	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13945.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	8.08	7.04	18.83	12.87	11.86	7.21	15.61	21.59	17.7	22.59	15.58	13.78
Merged-chr5-122732639-3	chr5	122732528	122732728	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	25084.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	14.94	13.08	7.42	5.63	12.27	29.48	12.62	21.42	8.46	2.01	3.52	2.82
Merged-chr9-55170956-3	chr9	55170873	55171073	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	20890.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	8.88	9.56	31.38	20.11	19.64	20.07	16.61	17.36	9.64	12.55	11.56	12.84
Merged-chr7-141392977-3	chr7	141392848	141393048	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	788.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	8.88	5.03	13.12	12.47	11.05	11.29	24.91	18.76	18.1	12.05	26.13	15.66
Merged-chr18-82765413-3	chr18	82765292	82765492	+	863.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6353.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	13.73	8.55	7.42	5.63	19.64	13.8	4.65	8.66	15.14	12.55	13.57	12.53
Merged-chr1-45894390-2	chr1	45894300	45894500	+	863.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31194.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	14.13	5.53	33.66	8.85	12.27	15.05	22.59	20.94	6.88	4.52	9.55	10.96
Merged-chr18-66471308-5	chr18	66471202	66471402	+	863.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	12698.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.04	5.79	3.42	0.4	6.95	6.59	2.33	4.54	4.13	6.03	6.53	5.95
Merged-chr12-98260184-2	chr12	98260150	98260350	+	863.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-791.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	5.65	4.28	5.7	5.23	2.05	3.45	6.31	6.64	7.08	3.51	5.53	15.04
Merged-chr16-50299212-3	chr16	50299117	50299317	+	863.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	133172.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	10.5	9.06	18.83	19.31	13.5	20.07	12.95	14.69	10.42	14.56	12.06	7.83
Merged-chr2-160058342-2	chr2	160058245	160058445	+	863.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	41692.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.44	3.77	10.27	7.64	8.59	15.05	5.31	12.84	24.59	13.05	24.62	10.65
Merged-chr11-97994836-5	chr11	97994659	97994859	+	863.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207231, intron 2 of 5)	intron (NM_207231, intron 2 of 5)	1414.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.65	7.8	8.56	5.63	6.55	13.8	5.65	8.36	23.6	14.56	24.62	10.96
Merged-chr14-62844029-3	chr14	62843968	62844168	+	863.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	6347.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	14.13	15.09	15.4	10.86	11.86	25.4	9.63	15.64	9.44	9.54	12.06	5.95
Merged-chr17-46520798-3	chr17	46520720	46520920	+	863.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081335, exon 23 of 41)	exon (NM_001081335, exon 23 of 41)	24031.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	6.06	4.02	12.55	4.83	14.73	13.48	13.95	9.25	13.18	4.02	14.57	4.39
Merged-chr3-54358779-5	chr3	54358709	54358909	+	863.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2298.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	8.88	10.82	3.99	3.62	2.05	4.7	8.97	5.64	8.85	6.03	11.56	10.65
Merged-chr13-51844868-3	chr13	51844779	51844979	+	863.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1796.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	12.11	10.31	13.69	6.03	11.05	23.2	6.98	11.83	22.82	18.58	30.65	18.17
Merged-chr3-122566241-3	chr3	122566153	122566353	+	863.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 5 of 15)	HAL1|LINE|L1	-24572.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	16.15	11.82	17.68	4.42	4.91	32.3	6.98	9.28	20.06	27.62	18.09	9.4
Merged-chr4-119004414-2	chr4	119004315	119004515	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42448.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	16.96	11.57	14.26	6.84	5.32	20.7	3.65	4.82	14.16	10.04	17.59	2.51
Merged-chr1-89940587-3	chr1	89940477	89940677	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9401.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	13.73	13.08	9.13	12.47	12.68	22.89	4.32	11.13	11.01	9.04	11.56	8.77
Merged-chr15-50779162-1	chr15	50779062	50779262	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109887.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.21	0.25	2.28	0.0	1.23	5.33	6.64	8.75	2.75	7.53	5.02	3.45
Merged-chr4-126467895-3	chr4	126467801	126468001	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153403, intron 1 of 18)	intron (NM_153403, intron 1 of 18)	682.0	NM_001317174	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	11.71	12.32	23.96	9.65	15.14	12.23	17.27	14.52	16.33	15.06	9.55	6.58
Merged-chr3-121766206-1	chr3	121766106	121766306	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008991, intron 20 of 22)	intron (NM_008991, intron 20 of 22)	42669.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	4.85	2.01	13.69	3.22	4.91	6.9	6.64	7.6	3.34	3.01	7.54	5.95
Merged-chr15-58344790-2	chr15	58344739	58344939	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-20670.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	4.04	2.01	4.56	1.21	6.95	2.51	5.65	5.41	3.34	7.03	11.05	7.21
Merged-chr18-12188810-3	chr18	12188706	12188906	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008720)	TTS (NM_008720)	20076.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	6.86	8.3	6.28	11.66	16.77	14.74	12.62	16.46	13.57	14.06	19.6	12.53
Merged-chr2-151969624-1	chr2	151969524	151969724	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001289151, exon 2 of 2)	3' UTR (NM_001289151, exon 2 of 2)	-2007.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	7.27	3.52	1.14	1.61	11.05	11.6	6.64	9.39	2.36	11.05	10.55	6.27
Merged-chr13-30786294-1	chr13	30786194	30786394	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37061.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	6.86	6.04	4.56	18.1	14.32	13.8	5.98	19.54	9.05	4.02	3.52	12.22
Merged-chr15-59800456-1	chr15	59800356	59800556	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-5497.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.81	0.0	0.0	0.0	4.5	10.35	5.65	9.9	0.2	0.0	2.51	0.31
Merged-chr7-49601346-1	chr7	49601246	49601446	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	35489.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	6.06	3.02	2.28	6.44	5.73	7.21	7.31	9.39	1.57	1.51	4.52	4.39
Merged-chr11-31732481-2	chr11	31732398	31732598	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60636.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	11.31	7.55	9.13	14.08	2.45	1.25	1.33	3.87	21.83	22.09	24.12	15.98
Merged-chr16-89707670-3	chr16	89707569	89707769	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110683.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	10.9	6.79	16.54	8.45	10.23	12.86	9.63	18.59	12.78	12.55	23.11	10.96
Merged-chr3-95509025-1	chr3	95508925	95509125	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007802, exon 8 of 8)	3' UTR (NM_007802, exon 8 of 8)	9815.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.81	3.77	2.28	8.45	11.45	8.78	10.63	12.34	5.31	3.51	5.02	4.39
Merged-chr10-122722238-2	chr10	122722079	122722279	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	42864.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	8.08	1.26	5.13	4.42	7.77	5.64	4.98	13.71	5.7	2.01	8.04	1.25
Merged-chr10-128092230-2	chr10	128092119	128092319	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-564.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	7.67	5.79	10.27	2.41	5.73	10.66	10.96	2.64	8.06	6.03	18.09	6.58
Merged-chr19-26605956-3	chr19	26605913	26606113	+	863.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	CpG	853.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	11.31	8.3	9.13	10.86	2.05	9.09	16.28	12.36	10.82	14.06	13.57	6.58
Merged-chr7-107597756-3	chr7	107597676	107597876	+	863.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	2725.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	15.34	9.56	11.41	18.9	12.27	17.25	11.96	17.89	22.23	11.05	17.59	6.58
Merged-chr19-55710008-3	chr19	55709916	55710116	+	863.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7812.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	23.02	12.83	18.83	14.08	15.96	26.03	12.29	12.59	14.95	31.13	8.04	7.52
Merged-chr2-8660710-2	chr2	8660621	8660821	+	863.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-528794.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	4.85	4.02	14.26	4.83	16.36	23.2	17.94	29.13	12.19	9.04	26.63	9.4
Merged-chr18-33720415-2	chr18	33720302	33720502	+	863.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-74490.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	14.13	9.56	18.25	26.95	0.0	1.25	0.0	0.42	24.39	15.57	28.14	9.71
Merged-chr11-89025734-3	chr11	89025633	89025833	+	863.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26330.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.06	10.56	13.69	7.24	11.86	30.73	14.62	10.93	20.85	26.11	7.03	15.04
Merged-chr8-84706867-3	chr8	84706742	84706942	+	863.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5385.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.86	15.34	5.13	10.46	13.91	17.87	11.29	10.35	13.77	17.07	14.07	11.28
Merged-chr13-49381412-3	chr13	49381323	49381523	+	863.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039179, intron 6 of 6)	intron (NM_001039179, intron 6 of 6)	-39800.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	17.36	12.83	10.27	13.27	11.45	17.25	6.31	16.29	17.31	14.06	16.58	24.43
Merged-chr2-156201621-3	chr2	156201525	156201725	+	863.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	4978.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	10.09	7.55	14.83	10.86	13.91	15.37	6.64	11.41	15.74	10.54	9.04	10.34
Merged-chr3-55612384-3	chr3	55612289	55612489	+	863.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150661.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	12.52	7.8	9.13	21.72	15.96	12.54	9.3	16.26	10.23	8.03	13.57	10.96
Merged-chr14-9470585-2	chr14	9470481	9470681	+	863.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-413514.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.04	3.77	11.98	3.62	11.86	12.23	12.29	7.79	22.62	11.05	14.57	3.76
Merged-chr6-97235160-1	chr6	97235060	97235260	+	863.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	17620.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.23	0.5	2.85	3.62	1.23	8.15	6.98	9.45	1.38	5.02	4.52	2.51
Merged-chr5-77358566-1	chr5	77358466	77358666	+	863.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	48082.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	6.46	6.54	5.13	0.8	0.41	8.47	9.63	9.0	6.69	6.53	6.53	3.13
Merged-chr11-103982426-3	chr11	103982315	103982515	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15544.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	10.09	3.52	5.13	9.65	20.46	15.37	22.59	37.74	34.42	24.1	23.62	19.11
Merged-chr18-73753020-3	chr18	73752915	73753115	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 1 of 3)	PB1D10|SINE|Alu	1464.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	27.05	34.21	37.08	46.66	36.82	32.3	39.86	45.36	8.26	6.03	13.06	5.95
Merged-chr3-31096888-3	chr3	31096794	31096994	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	1836.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	12.52	12.58	12.55	12.47	10.23	11.92	6.31	14.07	32.85	14.06	26.63	14.1
Merged-chr14-25464747-1	chr14	25464647	25464847	+	863.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	5562.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	11.31	5.03	5.13	1.61	13.09	9.41	4.32	9.42	5.31	9.54	3.01	2.82
Merged-chr13-112785187-3	chr13	112785088	112785288	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15589.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.23	7.04	12.55	0.4	24.55	22.26	17.27	21.39	37.17	38.66	31.66	21.93
Merged-chr3-27859469-3	chr3	27859363	27859563	+	863.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36905.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	16.56	12.07	7.99	21.72	8.59	12.86	12.95	13.46	11.21	16.07	15.07	7.21
Merged-chr11-69621995-3	chr11	69621894	69622094	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356469)	promoter-TSS (NM_001356469)	-58.0	NM_026991	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	12.52	9.06	12.55	8.04	2.45	15.37	3.99	9.34	20.06	14.06	18.09	9.4
Merged-chr10-39267153-3	chr10	39267058	39267258	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102641.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.23	8.05	14.83	15.28	23.73	22.58	17.61	24.73	14.16	10.04	22.11	9.4
Merged-chr11-19955844-3	chr11	19955741	19955941	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	31399.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	11.31	7.8	7.99	15.69	13.91	14.74	10.63	9.73	17.9	10.54	25.63	6.89
Merged-chr7-143629742-3	chr7	143629660	143629860	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153817, exon 2 of 2)	non-coding (NR_153817, exon 2 of 2)	1690.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	13.73	13.58	11.98	10.05	9.82	7.84	5.31	7.49	16.13	25.61	19.6	13.16
Merged-chr18-34223786-3	chr18	34223736	34223936	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-2064.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	8.88	7.55	16.54	8.85	18.82	18.81	8.64	15.73	22.62	10.04	20.6	12.22
Merged-chr2-18649087-3	chr2	18648982	18649182	+	863.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23380.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	9.69	10.06	8.56	24.13	21.68	10.66	14.95	16.21	17.7	16.07	33.16	13.47
Merged-chr15-99093446-3	chr15	99093343	99093543	+	863.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5715.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	15.34	8.05	11.41	6.84	17.18	23.83	10.96	10.65	16.72	6.03	23.11	4.07
Merged-chr15-5576840-3	chr15	5576733	5576933	+	863.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045274, intron 2 of 4)	intron (NR_045274, intron 2 of 4)	80515.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	9.69	6.04	6.85	16.89	18.41	8.78	8.3	11.64	18.49	17.57	11.05	15.98
Merged-chr7-98322639-3	chr7	98322522	98322722	+	863.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1414.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	23.82	7.29	27.95	28.15	24.55	23.83	12.29	14.5	11.6	20.59	10.05	7.83
Merged-chr2-167660835-3	chr2	167660764	167660964	+	863.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	680.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	8.88	5.79	5.13	10.46	6.95	9.72	17.94	9.31	10.42	9.04	5.02	10.02
Merged-chr8-36685542-3	chr8	36685432	36685632	+	863.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	47522.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	7.67	6.04	13.69	18.9	16.36	12.54	14.28	23.5	20.06	9.04	19.6	9.4
Merged-chr13-24095000-2	chr13	24094899	24095099	+	863.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 21 of 37)	MIR|SINE|MIR	-103785.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	9.69	3.52	2.28	5.23	13.5	17.25	5.65	12.11	16.92	17.57	13.57	7.83
Merged-chr16-92696814-3	chr16	92696737	92696937	+	863.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009821, exon 1 of 5)	5' UTR (NM_009821, exon 1 of 5)	492.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	18.17	9.81	9.13	9.25	12.27	9.41	10.63	13.4	18.69	18.58	12.06	19.42
Merged-chr4-139213298-3	chr4	139213193	139213393	+	863.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	19182.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	16.96	10.82	31.38	9.65	10.23	11.6	5.98	11.1	16.13	17.57	23.11	8.46
Merged-chr10-24928244-3	chr10	24928180	24928380	+	863.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007482)	promoter-TSS (NM_007482)	-810.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	6.86	11.07	14.83	9.65	4.5	5.64	20.26	15.59	12.78	30.13	18.09	15.35
Merged-chr7-125594046-3	chr7	125593965	125594165	+	863.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9364.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	12.52	9.56	12.55	8.85	6.95	10.03	5.65	9.95	13.37	14.56	21.61	14.41
Merged-chr8-117069873-2	chr8	117069767	117069967	+	863.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	12582.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	6.06	5.03	14.83	5.23	10.23	5.64	2.99	12.14	9.05	8.54	13.57	12.53
Merged-chr3-122619837-4	chr3	122619980	122620180	+	863.1488039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153118)	promoter-TSS (NM_153118)	-366.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	9.29	3.52	1.14	1.61	4.5	5.33	2.33	7.46	7.67	10.54	5.53	10.02
Merged-chr6-124907965-3	chr6	124907877	124908077	+	863.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008479, intron 5 of 7)	intron (NM_008479, intron 5 of 7)	3728.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	17.77	40.24	12.55	11.66	13.5	10.03	5.31	3.45	39.14	39.67	8.54	8.77
Merged-chr11-119440467-3	chr11	119440366	119440566	+	863.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49994.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	9.69	12.32	14.83	16.89	11.45	17.87	11.29	12.28	12.39	13.05	32.66	7.83
Merged-chr13-104948138-2	chr13	104948045	104948245	+	863.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029879, exon 6 of 6)	3' UTR (NM_029879, exon 6 of 6)	-84252.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	10.9	5.03	7.42	16.89	18.0	8.15	11.63	11.94	7.08	13.05	10.55	5.01
Merged-chr6-114294389-3	chr6	114294289	114294489	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	11754.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	21.0	10.56	18.25	6.03	10.23	18.5	12.95	3.81	10.82	31.13	13.57	5.01
Merged-chr17-86973063-4	chr17	86973009	86973209	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9998.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.04	4.28	4.56	1.61	8.18	8.78	4.98	2.58	11.6	9.54	4.52	3.45
Merged-chr7-17060200-3	chr7	17060121	17060321	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	2206.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	6.46	12.32	17.68	0.8	7.77	4.39	7.64	10.21	21.24	9.04	12.56	10.34
Merged-chr17-45759028-3	chr17	45758949	45759149	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	24543.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	11.71	1.51	13.69	12.07	18.41	15.99	19.93	25.07	18.1	11.05	29.65	12.53
Merged-chr18-88924536-2	chr18	88924445	88924645	+	863.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30338.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	10.5	4.02	4.56	16.09	20.86	10.66	14.28	31.37	3.34	1.51	6.03	8.14
Merged-chr2-22744467-3	chr2	22744359	22744559	+	863.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29868.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	10.09	12.07	7.42	14.88	9.41	9.41	9.97	8.21	8.46	13.56	14.57	6.89
Merged-chr17-87153157-2	chr17	87153042	87153242	+	863.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41800.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	13.33	13.83	9.13	8.45	13.91	10.98	10.3	9.36	7.47	5.52	7.03	3.76
Merged-chr5-67303999-3	chr5	67303903	67304103	+	863.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2952.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.46	11.32	19.4	39.82	9.41	8.15	9.97	20.58	15.14	10.04	19.09	15.35
Merged-chrX-85871751-4	chrX	85871574	85871774	+	863.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	intron (NM_001163539, intron 1 of 1)	1401.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	6.46	7.04	6.28	11.66	5.73	9.72	8.3	10.54	9.05	11.05	16.58	9.71
Merged-chr15-79038052-3	chr15	79037945	79038145	+	863.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013847, exon 9 of 9)	3' UTR (NM_013847, exon 9 of 9)	-3840.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	12.52	14.09	2.85	9.65	18.0	23.83	5.31	14.07	12.78	13.56	18.59	10.02
Merged-chr7-45247840-3	chr7	45247757	45247957	+	863.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324535, intron 1 of 12)	B2_Mm2|SINE|B2	7104.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	23.02	13.83	13.69	24.13	11.05	22.26	2.99	8.07	14.95	20.59	14.57	14.1
Merged-chr5-130455330-2	chr5	130455218	130455418	+	863.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	CT-rich|Low_complexity|Low_complexity	6526.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	8.08	4.53	7.42	6.03	7.77	7.21	10.3	8.83	14.16	8.54	13.57	15.35
Merged-chr11-73096112-1	chr11	73096012	73096212	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	5517.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	8.08	4.78	9.7	12.87	17.18	8.47	6.64	11.44	4.92	11.05	8.04	5.01
Merged-chr11-119057082-3	chr11	119056979	119057179	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16166.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	7.67	10.31	12.55	7.64	11.86	10.98	4.32	9.36	12.19	15.06	8.04	3.76
Merged-chr7-110556386-1	chr7	110556286	110556486	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 2 of 40)	RSINE1|SINE|B4	58534.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	6.86	4.28	4.56	6.44	9.0	4.7	4.32	8.55	2.36	5.52	3.01	7.52
Merged-chr14-77823037-1	chr14	77822937	77823137	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24069.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	2.42	0.5	3.99	7.24	10.64	5.64	7.64	11.07	3.34	6.53	8.04	5.64
Merged-chr19-58194059-3	chr19	58193965	58194165	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102139.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	20.59	18.36	59.33	43.84	29.46	11.92	12.95	27.14	8.46	4.52	9.55	5.33
Merged-chr11-110642667-1	chr11	110642567	110642767	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	163327.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.46	1.76	6.85	4.02	7.77	4.08	10.96	14.97	4.72	7.53	13.06	4.7
Merged-chr17-56277493-1	chr17	56277393	56277593	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-726.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	8.88	3.77	3.99	0.8	11.05	15.05	1.33	5.8	7.87	13.56	9.55	5.01
Merged-chr10-8876340-1	chr10	8876240	8876440	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	(CA)n|Simple_repeat|Simple_repeat	9730.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	3.52	1.14	0.4	1.64	5.02	1.33	3.11	11.01	2.01	4.52	1.88
Merged-chr11-63042654-1	chr11	63042554	63042754	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19005.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	5.65	3.77	15.97	13.67	0.0	0.0	0.0	1.01	0.98	0.0	0.0	0.0
Merged-chr2-102899872-3	chr2	102899769	102899969	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1796.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.67	10.06	17.11	5.23	18.0	16.31	16.61	11.44	23.01	16.57	23.62	18.48
Merged-chr4-108383302-1	chr4	108383202	108383402	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001099303, exon 1 of 3)	exon (NM_001099303, exon 1 of 3)	353.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	3.63	3.52	1.14	4.83	2.86	0.63	7.64	4.65	2.95	10.04	4.02	3.13
Merged-chr2-124666539-1	chr2	124666439	124666639	+	863.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	12958.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.46	5.03	13.69	6.44	4.09	4.08	3.65	16.09	11.8	4.02	12.56	4.7
Merged-chr16-59460779-1	chr16	59460679	59460879	+	863.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081190, intron 8 of 8)	B3A|SINE|B2	8459.0	NR_040568	75636.0	Mm.490522	NR_040568	ENSMUSG00000099983	1700022E09Rik	-	RIKEN cDNA 1700022E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.41	0.0	0.0	0.0	22.03	14.06	16.08	10.96
Merged-chr1-52764697-1	chr1	52764597	52764797	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37339.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.4	2.01	12.55	4.83	2.45	5.02	5.98	6.7	4.92	0.5	2.01	2.82
Merged-chr13-63112216-1	chr13	63112116	63112316	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-127813.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.23	1.51	2.28	3.22	14.32	3.45	6.31	12.93	1.38	2.01	1.0	2.82
Merged-chr12-117831426-1	chr12	117831326	117831526	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-12435.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	8.88	16.6	4.56	0.8	13.09	16.62	7.97	2.19	4.33	3.01	7.03	5.64
Merged-chr14-48189547-1	chr14	48189447	48189647	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 2 of 5)	intron (NM_033602, intron 2 of 5)	-9169.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.81	1.01	1.71	2.41	7.36	15.37	3.65	14.75	3.15	0.5	7.03	1.25
Merged-chr5-5269351-1	chr5	5269251	5269451	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-3283.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.81	2.26	2.28	6.84	4.09	1.88	3.65	6.11	2.16	4.02	4.02	1.88
Merged-chr2-83726147-1	chr2	83726047	83726247	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1750.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	1.21	3.52	3.42	0.0	0.82	2.2	3.99	2.69	4.33	3.01	2.51	2.51
Merged-chr7-89299151-1	chr7	89299051	89299251	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028343, intron 3 of 14)	intron (NM_028343, intron 3 of 14)	39636.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.4	1.01	2.28	2.01	1.64	0.31	7.64	7.65	0.39	0.0	4.02	0.63
Merged-chrY-90811926-1	chrY	90811826	90812026	+	863.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	IMPB_01|Satellite|Satellite	26484.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	1.21	0.25	0.0	0.0	0.0	0.0	0.33	0.7	7.28	5.52	8.04	14.1
Merged-chr5-28168535-3	chr5	28168574	28168774	+	862.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010134, intron 1 of 1)	intron (NM_010134, intron 1 of 1)	2978.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	2.02	5.53	0.57	4.42	4.91	3.45	2.66	1.35	1.77	2.51	3.01	1.57
Merged-chr5-86935460-3	chr5	86935357	86935557	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-8954.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	10.09	9.56	14.83	9.65	26.18	19.76	32.55	63.22	27.54	17.07	36.68	10.65
Merged-chr4-70378203-3	chr4	70378094	70378294	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32241.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	29.07	9.06	27.38	6.84	21.27	11.6	19.93	69.14	22.03	20.08	17.59	14.41
Merged-chr7-43378429-3	chr7	43378316	43378516	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27075.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	15.34	10.06	10.27	8.45	11.45	15.37	10.63	11.83	19.47	19.08	23.62	6.89
Merged-chrX-13851482-3	chrX	13851401	13851601	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 4 of 4)	LTR16A2|LTR|ERVL	-4945.0	NM_009806	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	8.08	4.78	14.83	17.7	22.5	20.38	18.93	28.65	13.77	27.11	28.14	8.46
Merged-chr14-119027340-3	chr14	119027228	119027428	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081252, intron 26 of 38)	intron (NM_001081252, intron 26 of 38)	-71637.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	12.92	12.07	7.99	23.33	15.55	18.19	5.98	19.96	21.64	15.06	23.62	10.96
Merged-chr9-119401337-2	chr9	119401247	119401447	+	862.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-831.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	6.06	5.53	1.71	5.63	3.27	5.64	7.97	6.39	20.06	16.57	17.59	6.58
Merged-chr6-115317165-3	chr6	115317079	115317279	+	862.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43772.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	13.73	4.28	18.25	23.73	9.41	2.82	13.95	25.91	9.83	9.04	6.03	11.28
Merged-chr3-96595438-3	chr3	96595347	96595547	+	862.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1189.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	7.67	7.55	18.25	9.65	38.46	44.53	33.88	34.04	21.05	33.64	29.14	12.53
Merged-chr17-47924613-4	chr17	47924437	47924637	+	862.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	95.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	9.29	13.08	3.42	6.84	7.77	20.07	15.94	6.42	17.31	22.09	3.01	7.83
Merged-chr10-126513398-2	chr10	126513298	126513498	+	862.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	196993.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	6.46	10.31	30.8	30.16	9.82	9.09	14.95	19.49	1.18	0.5	0.5	2.82
Merged-chr11-3138516-3	chr11	3138391	3138591	+	862.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	MT2B|LTR|ERVL	14470.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	14.94	16.85	17.11	9.65	27.82	10.98	17.61	8.86	7.28	8.03	6.03	8.14
Merged-chr4-155488447-2	chr4	155488330	155488530	+	862.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2931.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.85	5.53	11.98	5.63	4.09	12.86	5.31	12.45	17.51	8.03	12.56	13.16
Merged-chr1-45924741-2	chr1	45924651	45924851	+	862.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016917, exon 2 of 8)	exon (NM_016917, exon 2 of 8)	843.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.25	5.03	6.28	5.23	12.27	15.05	2.99	14.1	6.88	4.02	16.08	9.71
Merged-chr11-44468542-2	chr11	44468437	44468637	+	862.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	2011.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	11.31	3.77	5.7	6.44	15.14	13.48	5.98	9.14	12.78	11.55	17.08	10.65
Merged-chr16-50526128-3	chr16	50526017	50526217	+	862.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040380)	promoter-TSS (NR_040380)	-128.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	9.29	7.29	11.41	9.65	16.36	7.84	12.29	16.26	28.13	20.08	20.6	13.47
Merged-chr17-5599161-2	chr17	5599064	5599264	+	862.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	106564.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.85	0.5	11.41	10.46	30.68	6.59	14.95	29.86	4.92	16.57	25.63	9.4
Merged-chr11-20108360-3	chr11	20108246	20108446	+	862.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4605.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	14.54	8.05	6.28	13.67	11.86	6.9	8.97	5.89	18.69	15.57	17.08	9.71
Merged-chr10-99250910-1	chr10	99250810	99251010	+	862.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12321.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	2.02	2.52	3.42	1.61	15.55	9.72	7.64	13.23	4.72	2.51	5.53	3.13
Merged-chr2-49734609-3	chr2	49734511	49734711	+	862.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53075.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	14.94	15.34	13.12	16.89	11.45	16.93	11.29	23.44	16.52	19.58	23.62	23.18
Merged-chr6-108398302-3	chr6	108398188	108398388	+	862.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 30 of 61)	intron (NM_010585, intron 30 of 61)	-91455.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	14.94	9.56	15.4	28.15	12.27	15.99	30.56	24.39	9.83	8.03	15.58	9.4
Merged-chr5-93265661-3	chr5	93265564	93265764	+	862.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1909.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	14.54	11.07	7.42	8.04	9.41	19.76	12.29	14.52	20.26	21.59	12.06	8.46
Merged-chr2-91205641-3	chr2	91205576	91205776	+	862.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	2764.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	9.29	11.82	23.96	16.49	15.55	6.27	20.93	12.11	14.55	10.04	13.06	16.6
Merged-chr12-70110112-2	chr12	70110034	70110234	+	862.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	1495.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	6.06	6.54	15.97	5.63	8.59	3.45	4.98	11.92	12.0	4.02	8.54	9.08
Merged-chr11-32629893-2	chr11	32629798	32629998	+	862.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12657.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	6.86	2.77	3.42	5.23	5.73	3.76	7.64	7.32	13.96	12.55	18.09	9.08
Merged-chrX-57282438-3	chrX	57282340	57282540	+	862.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358573, intron 5 of 20)	intron (NM_001358573, intron 5 of 20)	44161.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	8.88	17.61	34.23	16.89	17.59	10.03	11.96	20.58	17.7	3.51	13.06	6.58
Merged-chr7-35796275-3	chr7	35796179	35796379	+	862.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177739, intron 2 of 6)	intron (NM_177739, intron 2 of 6)	-6313.0	NR_033567	78547.0	Mm.406883	NR_033567	ENSMUSG00000044997	E130304I02Rik	-	RIKEN cDNA E130304I02 gene	ncRNA	10.09	12.83	15.4	22.93	22.09	12.86	17.27	13.07	7.47	3.51	11.56	9.08
Merged-chr14-61757295-2	chr14	61757210	61757410	+	862.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74937.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.44	2.77	3.42	7.64	15.55	21.95	5.98	9.11	29.11	11.05	15.07	15.04
Merged-chr12-99381075-3	chr12	99380958	99381158	+	862.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 2 of 5)	Lx4A|LINE|L1	69016.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	21.0	43.01	26.24	8.04	4.91	37.32	13.62	6.98	20.26	25.11	25.63	8.14
Merged-chr18-65513061-1	chr18	65512961	65513161	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-67169.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.63	3.52	5.7	3.22	15.96	6.9	8.64	11.52	7.08	4.02	8.04	5.64
Merged-chr3-36447145-3	chr3	36447049	36447249	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28375.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	6.06	6.04	9.7	2.01	35.59	28.22	39.2	45.79	46.81	40.67	41.2	24.43
Merged-chr17-8214572-3	chr17	8214444	8214644	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21499.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	22.21	9.56	16.54	16.89	20.05	8.15	9.97	22.6	16.13	7.53	5.53	14.1
Merged-chr10-81127747-1	chr10	81127647	81127847	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8524.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	6.46	11.07	4.56	2.01	9.0	7.53	7.97	7.29	10.42	10.04	4.02	5.33
Merged-chr19-29228296-3	chr19	29228185	29228385	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23518.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	14.94	14.34	7.99	5.23	14.32	13.8	11.96	14.19	11.21	8.03	7.03	5.01
Merged-chr1-163383786-1	chr1	163383686	163383886	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19883.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	4.85	2.52	7.99	2.41	4.91	8.15	5.65	10.18	2.36	3.51	4.02	9.71
Merged-chr17-65558406-3	chr17	65558310	65558510	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17628.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	11.71	16.1	17.11	20.91	10.23	10.98	4.65	17.83	28.32	15.06	11.56	17.54
Merged-chr12-41484379-1	chr12	41484279	41484479	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1678.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.02	5.79	4.56	4.02	11.86	8.15	3.32	7.91	8.06	6.53	4.52	7.52
Merged-chr7-34812883-3	chr7	34812784	34812984	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175140)	promoter-TSS (NM_175140)	-173.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	8.08	8.55	11.41	14.48	0.82	10.66	14.28	13.04	29.11	30.13	19.6	5.95
Merged-chr4-86672492-3	chr4	86672413	86672613	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2454.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	8.08	5.53	9.7	12.87	22.91	17.56	12.62	18.64	16.92	9.04	27.64	8.14
Merged-chr5-92254692-3	chr5	92254597	92254797	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011148, intron 1 of 16)	intron (NM_011148, intron 1 of 16)	1581.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	12.52	29.43	28.52	24.13	24.96	43.59	14.28	33.17	8.26	12.05	24.12	11.59
Merged-chr9-52168393-2	chr9	52168228	52168428	+	862.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-217.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	10.5	11.07	11.41	12.07	4.5	7.84	5.31	8.24	3.54	8.54	5.53	2.51
Merged-chr8-22433153-3	chr8	22433051	22433251	+	862.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21811.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	14.94	6.04	10.84	8.85	15.96	16.31	3.32	11.75	21.83	6.53	13.06	10.96
Merged-chr11-79523758-2	chr11	79523657	79523857	+	862.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	5.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	9.69	15.85	8.56	3.22	18.0	11.6	5.31	15.25	22.82	13.05	13.06	12.84
Merged-chr2-143975434-3	chr2	143975334	143975534	+	862.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	35829.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	14.94	9.56	15.4	11.66	19.23	8.78	27.57	33.56	17.7	11.05	27.13	20.68
Merged-chr3-60531468-3	chr3	60531374	60531574	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	30295.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	12.11	19.12	11.41	28.96	25.36	18.5	11.29	21.03	14.95	13.56	28.64	10.34
Merged-chr6-120917462-3	chr6	120917344	120917544	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-620.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	20.19	10.82	7.99	6.84	10.23	7.21	7.64	3.81	13.77	24.1	11.56	14.72
Merged-chr16-77300704-3	chr16	77300619	77300819	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28609.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	16.56	13.83	13.12	16.49	11.86	12.23	14.62	18.11	10.62	13.56	10.05	5.64
Merged-chr19-29355065-3	chr19	29354947	29355147	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6824.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	15.34	11.82	11.98	12.47	10.23	10.66	8.97	8.61	16.72	15.57	13.06	8.46
Merged-chr11-19019779-4	chr11	19019738	19019938	+	862.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-869.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	7.27	14.34	15.97	15.69	8.18	7.53	16.28	15.39	12.0	15.06	19.6	7.83
Merged-chr4-150898899-3	chr4	150898801	150899001	+	862.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020569, intron 6 of 6)	intron (NM_020569, intron 6 of 6)	11020.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	11.71	12.58	6.28	7.64	8.18	9.09	7.97	10.74	19.08	22.09	29.14	10.96
Merged-chr1-172588681-3	chr1	172588588	172588788	+	862.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029084, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	1880.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	10.9	13.83	28.52	26.14	16.77	18.19	8.97	22.29	13.18	8.54	13.06	7.21
Merged-chr2-31245864-1	chr2	31245764	31245964	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019681)	promoter-TSS (NM_019681)	-59.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	4.44	1.76	2.28	2.82	10.64	9.72	9.97	10.71	8.06	8.54	5.53	5.33
Merged-chr4-148075552-2	chr4	148075432	148075632	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12532.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	7.27	8.8	7.42	8.04	18.0	9.09	7.97	10.65	16.13	14.56	13.57	14.72
Merged-chr3-68713755-1	chr3	68713655	68713855	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22331.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	9.29	5.03	4.56	5.23	11.05	6.9	5.98	8.86	6.49	5.02	12.06	4.07
Merged-chr5-43082513-1	chr5	43082413	43082613	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-150950.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.63	1.51	6.85	2.41	7.77	5.96	8.97	10.6	4.52	9.54	21.61	5.64
Merged-chr16-48863406-1	chr16	48863306	48863506	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-9202.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.4	2.77	6.85	10.46	6.14	3.76	10.3	10.79	3.34	0.0	5.02	3.76
Merged-chr9-37247169-1	chr9	37247069	37247269	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8569.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.65	4.53	9.13	8.45	10.64	7.53	14.95	13.65	6.49	7.03	11.56	6.58
Merged-chr16-21704703-3	chr16	21704621	21704821	+	862.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10056.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	11.71	10.56	12.55	15.28	13.09	19.44	8.3	15.42	18.49	10.04	14.07	7.83
Merged-chr16-92821188-3	chr16	92821032	92821232	+	862.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4942.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	9.29	3.52	9.13	4.42	8.59	11.92	3.65	6.53	8.65	8.03	4.52	5.64
Merged-chr7-105651330-3	chr7	105651227	105651427	+	862.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153393, intron 4 of 4)	intron (NR_153393, intron 4 of 4)	10882.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	10.9	8.05	7.42	8.45	13.5	11.29	8.3	10.15	11.8	20.08	19.09	5.33
Merged-chrX-169338448-3	chrX	169338353	169338553	+	862.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361166, intron 4 of 5)	ORR1F|LTR|ERVL-MaLR	18058.0	NM_001361166	101055907.0		NM_001361166		Gm15246	-	predicted gene 15246	protein-coding	12.92	13.33	13.69	7.64	12.68	21.01	4.98	12.56	13.37	5.52	23.11	4.07
Merged-chr3-129533900-3	chr3	129533826	129534026	+	862.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130450, intron 2 of 4)	CpG	-1538.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	9.29	10.06	18.25	16.09	13.09	11.92	20.93	17.38	16.13	16.07	9.04	10.02
Merged-chr2-128334254-3	chr2	128334130	128334330	+	862.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	L1MB2|LINE|L1	95121.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	6.86	5.28	9.7	5.23	18.0	20.07	20.93	20.5	18.69	19.08	28.64	12.22
Merged-chr6-72096368-3	chr6	72096257	72096457	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1251.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	11.31	12.32	10.84	10.86	18.41	5.96	11.29	14.66	16.92	16.57	11.05	9.4
Merged-chr5-21547209-3	chr5	21547126	21547326	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	3699.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	15.75	6.79	21.68	9.65	9.41	19.76	7.64	16.4	28.13	16.07	25.12	9.08
Merged-chr13-52595042-3	chr13	52594949	52595149	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	-1833.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	16.56	8.55	7.42	3.22	18.0	33.55	7.97	4.93	21.05	15.57	9.04	5.64
Merged-chr17-26512645-3	chr17	26512549	26512749	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-4177.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.09	3.52	10.84	6.44	35.18	32.61	21.59	30.53	20.26	14.56	34.67	15.66
Merged-chrX-153716929-3	chrX	153716842	153717042	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6612.0	NM_027327	70123.0	Mm.146408	NM_027327	ENSMUSG00000086316	Nbdy	2210013O21Rik|AI181827|Thp5	negative regulator of P-body association	protein-coding	13.33	1.76	13.69	14.88	10.23	11.29	2.66	20.02	7.87	13.05	14.07	9.71
Merged-chr4-150030767-3	chr4	150030604	150030804	+	862.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21681.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	6.06	7.55	5.7	7.24	13.5	6.9	7.97	14.44	9.05	9.54	13.57	9.4
Merged-chr4-14922180-3	chr4	14922089	14922289	+	862.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7719.0	NM_001356579	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	16.56	13.33	7.42	11.66	13.91	9.09	5.65	14.94	14.55	7.53	21.1	10.02
Merged-chr12-55485922-3	chr12	55485776	55485976	+	862.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	6771.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	16.96	12.32	8.56	6.03	13.09	24.46	10.63	6.59	21.44	14.06	13.57	13.47
Merged-chr11-106561020-3	chr11	106560922	106561122	+	862.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	51908.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	12.11	5.79	10.27	9.65	12.68	17.87	10.63	15.45	15.74	4.02	17.59	5.01
Merged-chr12-17692151-3	chr12	17691979	17692179	+	862.272217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	1270.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.44	10.82	6.85	19.71	8.59	10.98	14.28	10.04	9.05	9.04	8.54	14.72
Merged-chr2-143837397-2	chr2	143837311	143837511	+	862.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	25762.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.04	6.04	3.42	7.24	10.64	15.05	7.31	9.28	18.69	10.04	18.09	2.82
Merged-chr2-129342263-2	chr2	129342168	129342368	+	862.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27634.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.04	3.02	1.14	9.25	8.59	6.59	3.32	6.98	24.0	22.09	20.1	18.17
Merged-chr7-75642526-3	chr7	75642416	75642616	+	862.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186982.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	21.0	12.58	13.12	14.48	34.36	22.58	16.61	34.23	13.57	10.04	12.06	1.88
Merged-chr16-57563496-1	chr16	57563396	57563596	+	862.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	14254.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.63	0.75	6.85	7.24	11.05	11.92	3.99	15.06	5.11	1.0	1.0	2.51
Merged-chrX-104482780-3	chrX	104482666	104482866	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081189)	promoter-TSS (NM_001081189)	-16.0	NM_001081189	331487.0	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	8.88	8.05	6.28	17.7	14.32	11.6	13.29	18.76	14.36	17.07	32.16	11.59
Merged-chr2-58850714-1	chr2	58850614	58850814	+	862.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 11 of 13)	MTEa|LTR|ERVL-MaLR	95530.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.83	2.77	3.99	6.03	10.23	10.35	12.62	7.93	2.56	4.52	4.02	4.39
Merged-chr5-148509375-3	chr5	148509284	148509484	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	42289.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	14.54	4.78	9.13	20.51	22.09	18.19	19.6	22.01	12.39	10.54	25.12	8.46
Merged-chr2-170328717-3	chr2	170328623	170328823	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27638.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	21.8	11.32	15.4	5.63	7.77	10.98	4.32	10.21	13.96	14.06	18.09	5.64
Merged-chr10-94645487-3	chr10	94645394	94645594	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	43119.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	11.31	10.82	11.98	16.89	22.09	20.07	11.63	9.87	15.74	15.57	18.09	14.72
Merged-chr11-89028930-2	chr11	89028834	89029034	+	862.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29531.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.85	3.77	18.25	5.23	9.41	5.64	1.0	8.72	38.16	36.15	40.2	16.6
Merged-chr9-22225269-2	chr9	22225184	22225384	+	862.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	-419.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	8.88	16.85	17.11	13.67	14.32	25.09	17.27	15.53	18.69	23.6	15.07	12.22
Merged-chr6-113649594-3	chr6	113649494	113649694	+	862.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11127.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	10.09	8.55	16.54	12.07	19.23	43.9	19.93	22.09	22.03	19.58	15.58	6.27
Merged-chr14-61689538-3	chr14	61689450	61689650	+	862.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7177.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	17.77	13.33	15.4	11.26	26.18	50.17	18.27	19.65	16.92	12.55	12.06	10.34
Merged-chr6-86594835-3	chr6	86594733	86594933	+	862.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33341.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	12.11	11.57	7.42	3.62	11.05	26.03	6.64	13.23	14.75	20.59	11.05	17.86
Merged-chr12-25398911-3	chr12	25398834	25399034	+	862.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269760.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.25	4.28	15.4	10.86	11.05	9.72	11.63	19.63	15.14	12.05	17.08	18.48
Merged-chr19-56745194-3	chr19	56745066	56745266	+	862.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22794.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.65	9.81	9.13	1.21	6.55	12.86	4.98	8.69	13.37	13.05	16.58	8.77
Merged-chr2-58489740-3	chr2	58489662	58489862	+	862.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	71648.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	31.5	25.4	29.09	61.54	15.55	8.78	7.31	13.57	12.59	5.52	12.56	10.96
Merged-chr9-123957026-3	chr9	123956918	123957118	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11674.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	15.75	12.32	17.11	13.67	16.77	21.32	6.64	4.32	16.33	18.58	18.09	3.76
Merged-chr7-75596255-3	chr7	75596144	75596344	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	140710.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	11.31	12.32	15.4	10.86	23.32	19.44	12.29	28.43	11.01	5.52	11.56	7.21
Merged-chr15-6626265-3	chr15	6626146	6626346	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	28057.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	22.61	7.55	7.99	9.25	29.05	38.26	19.93	23.36	18.1	34.14	20.6	9.71
Merged-chr1-16689612-3	chr1	16689488	16689688	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	1132.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.63	14.34	2.28	10.86	15.96	13.17	10.63	12.36	10.42	15.57	18.59	10.65
Merged-chr5-149241184-3	chr5	149241133	149241333	+	862.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23771.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.25	10.82	17.11	10.46	8.18	10.98	2.66	9.67	15.93	23.6	11.05	6.89
Merged-chr4-32163025-1	chr4	32162925	32163125	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	198918.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.83	1.76	3.42	4.83	4.5	10.03	3.32	7.15	6.49	2.01	5.02	5.33
Merged-chr3-31445654-1	chr3	31445554	31445754	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-135335.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.42	1.01	3.99	1.61	8.18	15.68	5.65	12.36	7.28	10.04	7.54	3.76
Merged-chr2-102990453-3	chr2	102990358	102990558	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83055.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	8.88	7.55	8.56	10.05	35.18	20.38	16.94	26.75	19.67	22.09	20.6	15.66
Merged-chr12-87375852-1	chr12	87375752	87375952	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	B3|SINE|B2	12503.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	10.09	5.03	7.99	2.41	8.59	6.59	6.64	9.76	8.85	7.03	13.57	4.7
Merged-chr10-50895348-1	chr10	50895248	50895448	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011376)	promoter-TSS (NM_011376)	-303.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.81	2.01	0.57	2.41	2.86	0.94	7.97	7.93	1.97	0.5	2.51	3.76
Merged-chr15-6534049-1	chr15	6533949	6534149	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45798.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.81	1.01	1.14	0.8	5.32	9.41	5.31	9.42	3.54	5.52	12.06	4.39
Merged-chr4-137047786-2	chr4	137047692	137047892	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198248, intron 1 of 18)	intron (NM_198248, intron 1 of 18)	903.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	12.52	10.82	16.54	4.42	7.77	26.03	4.98	2.16	12.0	14.06	6.03	3.76
Merged-chr1-171562910-1	chr1	171562810	171563010	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	3717.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	2.42	1.51	3.99	2.01	3.27	0.31	1.99	2.44	0.2	0.5	1.0	2.19
Merged-chr2-27775883-1	chr2	27775783	27775983	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	65300.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.67	10.82	1.71	3.62	2.45	3.14	3.32	0.81	2.56	3.51	4.02	0.94
Merged-chr2-4504672-1	chr2	4504572	4504772	+	862.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-55082.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.65	5.53	6.28	4.02	2.05	5.64	2.66	3.39	11.41	13.56	23.11	13.16
Merged-chr12-84316925-4	chr12	84316857	84317057	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045546)	promoter-TSS (NR_045546)	98.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	11.71	12.83	13.69	18.1	19.64	16.93	15.28	10.35	10.62	11.05	15.58	4.7
Merged-chr18-24529555-1	chr18	24529455	24529655	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360807, intron 1 of 7)	CpG	649.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	8.88	8.05	5.13	8.45	6.95	7.84	10.96	8.36	5.31	10.04	14.07	7.83
Merged-chr17-32111333-1	chr17	32111233	32111433	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19910.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	2.42	8.8	2.28	4.83	11.45	6.27	4.98	6.9	3.74	1.0	6.03	4.39
Merged-chr5-99236245-1	chr5	99236145	99236345	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	B3|SINE|B2	16682.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.48	9.56	1.14	2.82	7.36	11.29	2.99	1.96	2.56	1.51	4.02	5.01
Merged-chr8-42194081-2	chr8	42194007	42194207	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	366840.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	9.69	8.3	6.85	14.88	25.36	22.89	17.61	41.1	0.0	0.0	1.0	0.94
Merged-chr2-21261803-3	chr2	21261701	21261901	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56077.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	9.29	10.06	16.54	5.63	10.64	12.86	10.96	14.58	22.42	15.06	27.13	17.54
Merged-chr1-67044140-1	chr1	67044040	67044240	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5268.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.81	0.5	0.0	0.4	5.73	5.02	10.96	7.93	2.16	2.51	8.54	3.76
Merged-chr5-72764081-1	chr5	72763981	72764181	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 13 of 17)	B3|SINE|B2	-11304.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.85	3.02	2.85	4.83	4.91	2.2	7.64	8.86	9.64	6.03	1.0	5.95
Merged-chr6-119341591-1	chr6	119341491	119341691	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362214, intron 4 of 11)	MLT1J|LTR|ERVL-MaLR	-10825.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	3.63	4.02	2.28	2.82	2.86	12.54	5.98	9.62	6.69	1.0	16.08	4.07
Merged-chr8-35571026-1	chr8	35570926	35571126	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BC1_Mm|scRNA|scRNA	-16772.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	3.63	3.27	3.42	6.84	13.91	12.23	8.97	6.59	2.36	1.51	13.57	3.13
Merged-chr14-102811246-3	chr14	102811150	102811350	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	171382.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	14.54	8.55	9.7	16.89	16.77	19.44	13.95	12.67	17.9	14.56	18.09	15.35
Merged-chr6-17772689-1	chr6	17772589	17772789	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	23519.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	2.83	7.29	4.56	4.83	8.18	4.08	2.99	8.64	6.1	9.04	9.04	6.58
Merged-chr2-180256402-1	chr2	180256302	180256502	+	862.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-977.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	6.06	3.52	1.71	6.84	4.5	8.47	6.31	2.05	12.0	9.54	11.05	11.9
Merged-chr4-65496624-1	chr4	65496524	65496724	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207109, intron 19 of 22)	intron (NM_207109, intron 19 of 22)	-108362.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	2.42	3.27	3.42	2.41	5.32	3.45	5.98	7.35	4.72	11.05	7.54	1.57
Merged-chr4-150570052-3	chr4	150569936	150570136	+	861.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	(CCCTG)n|Simple_repeat|Simple_repeat	82138.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	8.48	9.81	20.54	10.05	12.27	5.33	8.64	9.22	6.88	11.05	5.53	9.4
Merged-chr16-78200289-3	chr16	78200202	78200402	+	861.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55152.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	10.09	15.34	12.55	10.05	15.55	19.76	16.28	17.36	14.75	7.53	14.57	13.16
Merged-chr1-172364815-3	chr1	172364686	172364886	+	861.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	-11745.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	10.5	8.3	8.56	4.02	7.77	14.42	8.3	13.88	20.26	18.08	14.57	14.41
Merged-chr1-136726880-3	chr1	136726761	136726961	+	861.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30650.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	6.06	13.33	26.24	12.87	8.18	11.29	8.3	8.64	16.52	18.58	28.64	18.8
Merged-chr11-118247640-3	chr11	118247508	118247708	+	861.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	984.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.86	6.29	3.99	2.41	9.0	9.09	6.31	10.57	13.37	9.04	15.07	14.1
Merged-chr7-114530784-2	chr7	114530674	114530874	+	861.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011055, exon 13 of 16)	exon (NM_011055, exon 13 of 16)	32198.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	13.73	10.31	5.7	8.04	14.73	9.72	6.98	10.01	7.47	5.02	7.54	3.45
Merged-chr13-117237336-3	chr13	117237240	117237440	+	861.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	16767.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	8.88	9.06	11.98	17.7	42.96	58.64	52.48	70.15	35.6	32.13	60.3	25.37
Merged-chr15-68260164-3	chr15	68260062	68260262	+	861.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.88	11.57	5.7	9.25	5.73	12.23	7.64	15.08	12.78	7.53	11.56	14.41
Merged-chr6-29216810-2	chr6	29216700	29216900	+	861.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	-436.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	10.9	5.53	15.4	11.66	14.32	12.54	16.28	15.93	8.06	10.04	11.05	10.65
Merged-chr17-24285915-2	chr17	24285814	24286014	+	861.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031621, intron 21 of 29)	intron (NM_001031621, intron 21 of 29)	-34505.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	10.9	9.81	10.27	24.94	25.77	32.3	27.24	21.25	3.93	3.51	4.52	0.31
Merged-chr17-45703470-2	chr17	45703377	45703577	+	861.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17128.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	4.85	14.09	18.25	16.89	1.64	0.63	1.99	3.06	8.26	25.61	34.67	8.77
Merged-chr17-78682446-2	chr17	78682364	78682564	+	861.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011500, intron 6 of 17)	intron (NM_011500, intron 6 of 17)	54096.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	4.85	4.02	18.25	10.05	8.18	4.7	11.96	11.47	2.95	4.52	10.05	3.13
Merged-chr5-147992749-3	chr5	147992656	147992856	+	861.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029920, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	35436.0	NM_029920	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	8.48	8.05	9.7	3.22	16.77	23.2	16.28	19.79	18.1	29.62	14.07	10.02
Merged-chr15-76825734-3	chr15	76825648	76825848	+	861.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-7578.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	12.52	15.34	19.4	18.1	17.18	11.29	6.64	9.73	16.13	12.05	6.53	8.46
Merged-chr4-137890790-3	chr4	137890696	137890896	+	861.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	28559.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.23	6.29	11.41	10.86	11.45	14.42	10.63	15.34	56.25	58.24	66.83	42.29
Merged-chr9-77919323-2	chr9	77919213	77919413	+	861.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	1948.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	12.52	7.55	19.4	10.46	14.73	5.02	7.31	13.96	7.28	7.53	5.53	6.58
Merged-chr14-102929736-3	chr14	102929650	102929850	+	861.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	52882.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	7.67	9.56	21.68	15.28	10.64	9.09	9.3	13.77	12.0	8.54	21.1	11.59
Merged-chr5-112298819-1	chr5	112298719	112298919	+	861.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	22128.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.4	2.77	11.41	5.23	9.82	7.53	6.31	15.06	5.7	7.03	7.54	9.71
Merged-chr11-114884114-3	chr11	114884011	114884211	+	861.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5930.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	11.71	14.84	22.82	8.45	16.36	16.31	12.62	12.73	11.41	16.57	13.06	5.33
Merged-chr4-42902325-3	chr4	42902238	42902438	+	861.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14268.0	NM_001355693	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	16.15	18.36	8.56	2.82	8.59	29.79	10.96	9.84	13.37	28.62	7.03	7.21
Merged-chr17-69223647-3	chr17	69223551	69223751	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53555.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	9.69	12.07	6.28	8.04	19.23	15.99	14.62	24.14	17.51	13.56	20.6	12.22
Merged-chr17-31073482-3	chr17	31073397	31073597	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	15803.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	14.13	13.33	2.85	12.87	15.55	20.7	8.97	8.8	11.6	25.11	20.1	6.58
Merged-chrX-36743730-3	chrX	36743644	36743844	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085497, exon 1 of 5)	exon (NM_001085497, exon 1 of 5)	112.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	10.9	17.1	19.4	9.65	13.91	15.37	24.91	14.92	10.23	12.05	21.61	11.28
Merged-chr14-44980104-3	chr14	44980020	44980220	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7991.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	25.84	13.33	17.11	11.66	23.73	16.62	4.65	6.53	30.09	14.06	31.66	9.4
Merged-chr6-129548191-3	chr6	129548097	129548297	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-14913.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	6.06	13.33	13.69	12.47	13.5	15.05	10.3	21.48	8.06	6.53	5.02	10.96
Merged-chr19-41092132-3	chr19	41092049	41092249	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 17 of 20)	intron (NM_011904, intron 17 of 20)	-15036.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	9.29	8.3	11.98	19.31	15.96	2.51	7.31	10.57	13.37	8.03	18.09	7.52
Merged-chr17-5576045-3	chr17	5575874	5576074	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	83374.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.25	1.01	3.42	2.41	5.73	0.94	7.64	6.48	5.7	10.04	6.53	3.76
Merged-chr1-173962888-1	chr1	173962788	173962988	+	861.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 6 of 6)	intron (NM_008327, intron 6 of 6)	19956.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.81	3.02	0.57	0.8	9.41	7.84	3.65	11.36	0.0	1.0	0.5	0.94
Merged-chr5-135935461-3	chr5	135935385	135935585	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-844.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	8.48	17.61	18.25	6.84	18.0	37.32	11.29	14.07	13.57	21.09	15.58	9.08
Merged-chr16-85175044-1	chr16	85174944	85175144	+	861.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1337.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.23	1.26	1.71	0.0	9.82	17.56	15.61	23.05	1.38	0.5	5.02	0.94
Merged-chr17-56425688-3	chr17	56425595	56425795	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011218, exon 14 of 33)	exon (NM_011218, exon 14 of 33)	-6786.0	NR_105943	102465590.0		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	12.11	10.06	8.56	12.47	7.77	18.19	11.96	8.86	11.6	21.59	14.57	11.28
Merged-chr10-130228486-2	chr10	130228382	130228582	+	861.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17354.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	7.67	11.82	5.13	13.27	6.55	9.41	8.3	12.03	6.29	3.51	12.56	4.7
Merged-chr3-105709694-2	chr3	105709608	105709808	+	861.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4250.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	1.21	6.54	6.28	5.63	10.64	18.81	9.97	10.79	19.67	15.06	14.07	10.34
Merged-chr14-118507486-2	chr14	118507383	118507583	+	861.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	84989.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	21.0	8.05	6.28	28.96	25.36	21.32	32.22	49.82	1.18	2.51	12.56	3.13
Merged-chr2-181659380-2	chr2	181659286	181659486	+	861.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12254.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	4.85	5.79	1.14	4.83	11.86	18.5	4.32	14.3	14.75	13.56	10.05	8.77
Merged-chr9-16229106-3	chr9	16229016	16229216	+	861.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	149115.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	15.34	11.57	9.13	7.24	13.5	9.41	5.31	13.85	24.59	14.06	19.09	6.27
Merged-chr19-32651233-3	chr19	32651139	32651339	+	861.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011864, intron 8 of 12)	intron (NM_011864, intron 8 of 12)	31234.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	7.67	9.31	21.11	24.53	9.82	7.53	17.61	19.35	16.13	6.03	23.11	12.53
Merged-chr10-59741700-3	chr10	59741571	59741771	+	861.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359267, intron 4 of 11)	intron (NM_001359267, intron 4 of 11)	39108.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	16.56	10.56	25.1	12.07	11.05	18.5	24.58	15.87	11.6	9.04	11.05	7.21
Merged-chr6-122310458-3	chr6	122310421	122310621	+	861.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1801.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	11.31	4.28	11.98	6.44	7.36	10.03	5.31	4.54	9.83	9.04	8.54	9.71
Merged-chr14-61774904-3	chr14	61774802	61775002	+	861.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-92529.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	12.92	10.82	17.11	19.71	18.82	5.64	10.96	13.77	12.0	5.02	18.59	10.96
Merged-chrX-151801128-3	chrX	151800960	151801160	+	861.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2222.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	6.86	7.04	6.28	10.46	6.14	6.27	19.27	8.89	12.19	5.02	15.07	6.58
Merged-chr15-75832206-1	chr15	75832106	75832306	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172121, intron 3 of 11)	ID_B1|SINE|B4	9702.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	3.63	4.53	9.13	2.41	8.18	3.14	5.98	7.49	6.69	7.03	3.01	1.88
Merged-chr2-168197781-2	chr2	168197683	168197883	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132310, intron 9 of 11)	intron (NR_132310, intron 9 of 11)	9329.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	7.27	10.56	21.68	4.83	9.0	8.78	3.32	3.56	14.16	4.02	6.53	13.16
Merged-chr11-115422031-1	chr11	115421931	115422131	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183285, exon 2 of 6)	exon (NM_183285, exon 2 of 6)	1905.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	6.46	0.5	0.57	8.04	2.86	5.96	9.63	3.76	3.34	7.53	6.03	3.76
Merged-chr18-61321457-3	chr18	61321367	61321567	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 2 of 11)	intron (NM_133249, intron 2 of 11)	76433.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	8.88	19.37	22.25	11.26	9.41	15.05	12.95	14.24	24.39	15.57	24.62	17.86
Merged-chr3-89238486-2	chr3	89238382	89238582	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6531.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	10.5	4.02	6.28	2.41	11.05	12.54	1.66	4.18	16.52	7.03	7.03	8.77
Merged-chr8-77509208-2	chr8	77509114	77509314	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-7842.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.81	6.04	18.25	16.09	9.41	5.33	6.98	13.93	1.97	5.52	3.52	4.07
Merged-chr15-63612302-3	chr15	63612205	63612405	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132697.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	11.31	13.58	39.36	19.71	11.86	12.54	12.29	24.42	17.7	7.53	11.56	4.39
Merged-chr10-116727440-2	chr10	116727370	116727570	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045345, intron 1 of 2)	L1MDa|LINE|L1	1707.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0.0	5.53	5.7	2.82	2.05	6.27	4.32	9.36	18.49	8.03	15.07	10.65
Merged-chr15-50819989-2	chr15	50819876	50820076	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69073.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.88	9.81	7.42	7.64	22.09	31.36	19.27	14.83	15.74	11.05	13.57	6.89
Merged-chr2-28585375-3	chr2	28585276	28585476	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2097.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	18.17	12.07	15.97	11.26	10.64	15.99	4.32	8.41	17.51	11.05	17.08	10.96
Merged-chr17-21535912-2	chr17	21535817	21536017	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-39.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	6.06	3.52	4.56	4.83	15.55	5.33	5.98	7.54	11.8	12.55	14.57	13.78
Merged-chr8-31121158-2	chr8	31121060	31121260	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	9314.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	5.65	6.54	12.55	4.83	4.91	3.14	4.65	10.37	12.78	6.53	4.02	9.08
Merged-chr10-40129359-1	chr10	40129259	40129459	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12895.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.85	6.79	3.99	14.48	18.41	9.09	5.98	10.85	12.0	4.02	7.54	9.71
Merged-chr18-20789609-1	chr18	20789509	20789709	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43205.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.65	4.02	5.7	13.67	3.27	6.59	5.65	8.75	6.1	4.02	8.04	7.52
Merged-chr6-29624039-2	chr6	29623964	29624164	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14215.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.63	12.32	4.56	2.82	10.23	12.86	10.3	9.84	2.36	3.01	6.03	3.76
Merged-chr19-6126924-2	chr19	6126827	6127027	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	1288.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	8.08	4.53	3.42	6.03	15.55	8.78	1.33	7.37	18.88	12.05	10.55	11.59
Merged-chr6-136554966-3	chr6	136554857	136555057	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36106.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	16.56	19.12	13.12	12.87	32.73	29.79	13.62	20.38	12.59	14.06	9.55	4.7
Merged-chr8-11347917-1	chr8	11347817	11348017	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-35091.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	4.85	3.77	8.56	8.04	14.73	5.64	10.63	13.35	9.44	6.53	7.03	6.58
Merged-chr13-33001799-1	chr13	33001699	33001899	+	861.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-2742.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	7.67	4.02	3.42	2.41	5.73	0.63	3.99	1.49	12.0	5.52	10.55	12.22
Merged-chr15-79757282-3	chr15	79757192	79757392	+	861.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	14594.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	6.46	10.56	21.68	10.05	9.41	12.86	7.64	19.32	25.37	21.09	47.23	36.97
Merged-chr2-43862869-3	chr2	43862757	43862957	+	861.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	114033.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	6.86	7.8	9.7	23.33	21.27	12.54	16.94	29.07	14.95	10.54	13.57	16.92
Merged-chr15-97993091-3	chr15	97992994	97993194	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113515, intron 15 of 52)	intron (NM_001113515, intron 15 of 52)	11630.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	11.31	8.8	9.7	12.87	15.14	26.03	16.61	20.22	13.18	19.58	17.08	23.18
Merged-chr4-150568761-3	chr4	150568649	150568849	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83425.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	11.71	8.8	4.56	17.29	15.14	8.15	10.63	10.88	12.78	9.54	20.1	12.22
Merged-chr13-60594425-3	chr13	60594317	60594517	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7530.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	8.08	1.01	11.41	14.08	20.86	17.56	15.61	16.37	11.8	16.57	27.64	21.3
Merged-chr2-10048094-3	chr2	10048018	10048218	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 1 of 6)	CpG	491.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	12.92	12.32	6.28	3.62	12.27	7.53	8.64	12.5	12.0	14.06	15.58	9.71
Merged-chr9-44444623-3	chr9	44444511	44444711	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-3743.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	18.98	15.09	11.98	16.09	15.96	14.74	7.64	5.27	18.69	24.6	19.09	6.58
Merged-chr13-45088020-3	chr13	45087927	45088127	+	861.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85931.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	12.92	7.04	11.41	7.24	7.36	18.81	15.61	12.17	32.65	17.57	25.63	17.54
Merged-chr3-104790478-2	chr3	104790356	104790556	+	861.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1422.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	7.27	4.78	6.85	0.4	9.82	16.31	9.97	7.4	16.13	10.54	4.02	10.65
Merged-chr17-35359528-2	chr17	35359414	35359614	+	861.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	17181.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	9.29	11.57	5.7	11.66	9.0	13.17	7.31	7.65	2.36	3.51	0.5	2.19
Merged-chr2-19049757-4	chr2	19049590	19049790	+	861.38092	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51371.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	10.9	5.53	5.13	10.86	9.82	2.82	5.31	3.93	10.62	7.03	6.53	3.76
Merged-chr6-129171856-2	chr6	129171765	129171965	+	861.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8750.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.0	2.26	3.99	2.01	4.91	14.11	2.66	6.48	36.19	21.09	15.07	8.14
Merged-chr14-26668417-2	chr14	26668294	26668494	+	861.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178668, exon 1 of 3)	exon (NM_178668, exon 1 of 3)	1214.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	7.27	7.04	5.7	7.24	13.09	5.96	6.98	6.73	6.49	10.54	11.05	4.07
Merged-chr5-25099790-1	chr5	25099690	25099890	+	861.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	CpG	852.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.65	2.52	5.13	9.65	13.91	11.29	5.98	10.57	2.56	7.03	5.02	7.52
Merged-chr10-100742238-3	chr10	100742121	100742321	+	861.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-586.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	8.48	10.56	7.99	7.24	4.09	8.47	9.63	7.68	11.41	7.03	16.58	3.45
Merged-chrX-7638616-3	chrX	7638533	7638733	+	861.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009305)	promoter-TSS (NM_009305)	53.0	NM_009305	20977.0	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	8.08	6.54	6.28	6.44	24.55	26.03	12.62	17.92	25.37	29.62	27.13	15.35
Merged-chr4-88450278-3	chr4	88450158	88450358	+	861.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11332.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	10.5	9.31	17.11	12.47	21.68	10.03	13.95	22.96	16.72	13.56	21.61	10.96
Merged-chr4-53218885-1	chr4	53218785	53218985	+	861.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27311.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.44	0.75	5.13	2.41	18.0	9.41	14.95	12.48	5.51	2.51	3.52	1.25
Merged-chr4-134628772-1	chr4	134628672	134628872	+	861.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-60921.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	2.02	3.52	5.13	7.64	13.09	1.88	7.31	12.14	3.15	1.51	3.52	1.57
Merged-chr9-116123756-3	chr9	116123644	116123844	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 3 of 6)	Lx9|LINE|L1	51619.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	19.79	3.77	25.1	10.86	14.32	9.09	17.27	20.8	11.01	10.04	20.6	7.21
Merged-chr13-112466783-3	chr13	112466693	112466893	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2723.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	16.96	17.1	15.97	10.05	18.0	18.5	9.63	11.33	28.32	7.03	16.08	9.4
Merged-chr17-67213861-3	chr17	67213763	67213963	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	140596.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	10.5	7.04	19.4	9.25	9.82	16.93	9.63	16.04	15.14	16.57	22.61	4.7
Merged-chr10-84401329-3	chr10	84401234	84401434	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	39137.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	14.54	13.58	13.69	11.26	4.91	10.03	6.98	10.43	13.18	7.03	7.54	9.71
Merged-chr3-108283989-3	chr3	108283922	108284122	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271599)	promoter-TSS (NM_001271599)	-42.0	NM_001271599	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	11.31	7.8	15.97	8.85	11.05	5.96	8.64	9.28	5.9	4.52	14.57	3.76
Merged-chr9-56118722-2	chr9	56118625	56118825	+	861.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	28749.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	6.06	8.55	6.85	6.03	5.73	10.35	2.66	10.21	15.14	18.08	10.55	8.77
Merged-chr2-122452716-3	chr2	122452613	122452813	+	861.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356532, intron 10 of 17)	ID_B1|SINE|B4	11893.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	6.06	10.06	14.26	16.49	9.41	26.65	17.27	23.24	17.9	12.55	22.11	6.58
Merged-chr3-144933244-3	chr3	144933148	144933348	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033199)	promoter-TSS (NM_001033199)	-719.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	4.44	2.77	12.55	2.82	32.73	22.58	44.84	54.7	12.0	15.06	30.15	15.35
Merged-chr19-28677440-6	chr19	28677331	28677531	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-793.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	8.88	12.07	9.13	14.88	11.45	7.21	7.31	7.71	3.34	8.54	8.54	2.51
Merged-chr9-50482908-3	chr9	50482799	50482999	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11626.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	20.19	13.58	19.97	16.49	14.73	9.72	12.95	15.95	7.28	4.02	10.55	12.53
Merged-chr5-135460360-3	chr5	135460244	135460444	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65798.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	11.71	5.03	20.54	12.07	22.5	10.98	16.28	27.17	9.83	14.56	12.56	10.96
Merged-chr3-135477073-3	chr3	135476981	135477181	+	861.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8530.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	17.36	8.55	18.25	14.88	17.18	13.17	13.29	19.88	8.65	17.57	18.59	8.46
Merged-chr14-47541874-2	chr14	47541788	47541988	+	861.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26546.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	6.46	3.52	1.71	1.61	11.45	2.51	6.98	9.95	14.55	4.52	14.07	8.77
Merged-chr13-104750053-2	chr13	104749975	104750175	+	861.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	66878.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	11.71	10.31	19.4	24.53	1.64	6.59	8.97	12.2	6.29	4.52	1.51	6.89
Merged-chr8-122283544-3	chr8	122283424	122283624	+	861.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	1383.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	19.79	11.57	4.56	6.84	16.77	13.17	7.31	11.47	15.93	9.54	23.62	10.02
Merged-chr1-93579063-3	chr1	93578960	93579160	+	861.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145519, intron 12 of 26)	intron (NM_145519, intron 12 of 26)	56667.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	17.36	12.83	34.8	16.09	9.41	15.37	9.63	17.52	10.42	8.54	13.57	15.98
Merged-chr13-97192843-2	chr13	97192734	97192934	+	861.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010422, intron 2 of 13)	intron (NM_010422, intron 2 of 13)	5523.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	7.27	9.06	19.4	17.29	7.36	3.14	8.64	17.24	5.7	7.03	5.02	3.76
Merged-chr19-11231501-2	chr19	11231391	11231591	+	861.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	34660.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	7.67	8.05	7.42	8.04	16.77	15.05	15.28	16.46	14.55	16.07	12.56	6.27
Merged-chr14-50842708-3	chr14	50842621	50842821	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 28 of 54)	MTE2b|LTR|ERVL-MaLR	27833.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.04	8.3	22.25	26.95	8.18	9.41	7.31	20.33	36.98	18.08	41.71	24.12
Merged-chr1-131153159-3	chr1	131153054	131153254	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-53.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	15.75	5.79	8.56	9.25	11.45	17.25	11.96	20.66	28.72	13.56	21.1	10.65
Merged-chr4-119663187-3	chr4	119663100	119663300	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-4255.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	8.08	10.31	9.13	12.47	20.86	37.94	21.59	25.35	8.85	10.04	29.65	7.83
Merged-chr4-88862808-3	chr4	88862717	88862917	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	12730.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	11.31	21.63	11.41	16.49	13.91	17.56	21.26	15.28	9.64	12.05	20.6	10.34
Merged-chr1-85987428-3	chr1	85987324	85987524	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-26369.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	9.69	11.07	21.68	11.66	15.55	15.05	9.3	13.57	49.96	32.13	44.72	22.87
Merged-chr4-126104904-3	chr4	126104774	126104974	+	861.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	917.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	7.27	14.59	19.97	6.84	8.59	12.23	15.94	7.54	19.28	14.56	15.58	7.52
Merged-chr4-98384753-3	chr4	98384666	98384866	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1501.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	10.09	8.3	10.84	14.08	12.27	18.81	11.63	19.23	23.8	27.11	27.64	13.47
Merged-chr1-144247091-3	chr1	144247015	144247215	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1989.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	13.33	7.29	5.7	6.03	14.32	7.21	4.65	10.6	10.03	13.56	11.05	6.27
Merged-chr2-94267099-3	chr2	94266985	94267185	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5686.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	10.9	4.28	14.26	8.85	5.32	10.98	7.97	14.3	13.57	12.05	14.57	19.42
Merged-chr2-37426199-3	chr2	37426119	37426319	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146253, exon 2 of 2)	3' UTR (NM_146253, exon 2 of 2)	-3316.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	14.94	10.31	19.4	10.46	11.45	21.64	11.96	21.06	24.59	14.56	33.67	6.27
Merged-chr4-86886298-3	chr4	86886191	86886391	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290543, intron 2 of 5)	intron (NM_001290543, intron 2 of 5)	11877.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.63	8.8	13.69	12.47	17.18	8.15	13.29	28.54	18.88	12.55	14.07	9.4
Merged-chr16-57528679-3	chr16	57528624	57528824	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-20518.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	23.02	4.78	13.69	12.87	16.36	14.11	13.95	23.5	7.67	5.02	12.06	5.95
Merged-chrX-95176002-1	chrX	95175902	95176102	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9463.0	NM_001033329	236915.0	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.81	1.26	1.14	1.61	5.73	3.14	5.98	4.4	0.2	1.51	0.5	1.25
Merged-chr5-115538328-1	chr5	115538228	115538428	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-21139.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	11.71	8.05	3.99	17.7	10.64	7.53	3.65	6.56	11.21	13.05	19.09	8.46
Merged-chr2-45099241-2	chr2	45099180	45099380	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10997.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.23	8.05	1.14	1.61	15.55	26.65	5.98	5.05	8.06	16.07	2.51	1.25
Merged-chr1-172426976-3	chr1	172426853	172427053	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-48407.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	11.31	7.55	13.69	16.09	14.73	14.42	12.29	16.35	26.75	30.13	17.08	14.1
Merged-chr16-91416364-1	chr16	91416264	91416464	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	10129.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	11.31	1.51	5.13	1.61	2.45	1.88	7.64	7.37	6.49	1.51	2.51	4.07
Merged-chr12-3807277-1	chr12	3807177	3807377	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	117.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.23	6.54	2.28	4.83	4.5	8.15	1.0	8.16	3.74	3.01	4.52	4.07
Merged-chr11-34695021-1	chr11	34694921	34695121	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033374, intron 17 of 51)	intron (NM_033374, intron 17 of 51)	88884.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.86	3.02	9.13	8.04	4.91	7.53	2.66	9.39	4.33	3.51	11.56	3.13
Merged-chr9-87144340-1	chr9	87144240	87144440	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177731)	promoter-TSS (NM_001177731)	34.0	NM_001101482	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	4.85	5.53	4.56	5.23	2.05	1.88	7.64	7.71	1.57	1.0	3.01	1.57
Merged-chr14-74977126-2	chr14	74977015	74977215	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	2029.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	14.13	5.28	6.85	16.89	12.27	8.15	6.31	10.51	4.33	6.53	7.03	4.39
Merged-chr14-122058067-1	chr14	122057967	122058167	+	861.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23393.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	6.86	5.53	5.7	3.62	5.73	15.68	1.99	3.2	14.55	13.56	8.04	2.82
Merged-chr17-45855771-1	chr17	45855671	45855871	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	25681.0	NR_152136	75154.0	Mm.399341	NR_152136		4930542M03Rik	-	RIKEN cDNA 4930542M03 gene	ncRNA	2.02	3.52	3.42	12.87	2.86	1.88	13.29	7.23	0.39	0.0	1.0	4.7
Merged-chr3-58636969-1	chr3	58636869	58637069	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081262, exon 1 of 14)	exon (NM_001081262, exon 1 of 14)	238.0	NM_001081262	545527.0	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	1.62	1.51	5.13	1.21	0.82	2.82	4.65	1.07	5.31	5.02	2.51	6.89
Merged-chr6-108825191-3	chr6	108825091	108825291	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3450.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	8.48	9.06	18.25	4.02	21.27	14.74	15.94	21.17	17.11	18.08	12.06	9.4
Merged-chr5-90656007-1	chr5	90655907	90656107	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15480.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.44	2.52	3.42	5.63	9.0	3.76	5.98	14.83	3.15	1.51	5.53	0.94
Merged-chr5-62616097-1	chr5	62615997	62616197	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 28 of 32)	intron (NM_178407, intron 28 of 32)	150080.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.23	4.78	3.99	6.44	10.64	10.66	2.99	10.37	1.57	0.5	2.01	1.88
Merged-chr5-39644656-2	chr5	39644470	39644670	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010474)	promoter-TSS (NM_010474)	61.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	9.29	0.5	0.0	0.4	4.09	2.82	1.99	6.36	2.95	6.03	5.53	5.01
Merged-chr12-40459100-2	chr12	40458995	40459195	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13042.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.86	1.76	2.28	4.83	16.77	12.86	9.3	11.8	14.36	17.57	19.6	8.77
Merged-chr8-79941202-1	chr8	79941102	79941302	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116806.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.04	6.54	7.99	6.84	13.91	9.72	11.29	14.1	6.88	3.51	16.08	5.95
Merged-chr10-78092890-2	chr10	78092803	78093003	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23535.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.23	11.32	10.27	1.61	5.32	2.2	0.0	0.03	12.78	9.54	8.54	10.34
Merged-chr2-6707455-1	chr2	6707355	6707555	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	14207.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	1.62	14.34	7.99	3.62	15.55	3.76	4.98	11.8	3.34	2.01	6.53	6.27
Merged-chr15-97824152-3	chr15	97824046	97824246	+	860.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	7621.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	12.52	16.35	22.82	6.44	26.18	15.68	11.29	12.34	8.46	13.05	12.56	11.9
Merged-chr11-116635617-2	chr11	116635520	116635720	+	860.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8601.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	10.09	10.56	17.11	9.65	14.73	30.42	18.6	3.76	3.15	4.02	6.53	0.0
Merged-chr18-58568509-3	chr18	58568459	58568659	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	12319.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.85	6.79	7.99	7.24	15.14	16.31	11.96	14.02	12.39	12.55	15.07	5.01
Merged-chr10-79695430-3	chr10	79695314	79695514	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008504)	TTS (NM_008504)	1588.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	18.57	7.55	7.99	3.22	10.23	14.74	7.97	12.22	21.05	10.54	27.13	9.4
Merged-chr1-54586362-3	chr1	54586234	54586434	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28650.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	6.86	11.07	13.69	5.63	9.41	6.9	7.31	9.45	7.47	1.51	8.54	7.83
Merged-chr4-42947068-3	chr4	42946976	42947176	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2791.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	12.11	14.34	16.54	9.65	18.41	18.5	8.97	8.1	29.5	16.57	16.58	8.77
Merged-chr6-122491753-3	chr6	122491637	122491837	+	860.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5432.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	11.31	11.57	14.83	6.44	12.68	12.86	8.64	15.0	7.28	5.02	18.59	11.9
Merged-chr10-19124939-3	chr10	19124842	19125042	+	860.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16807.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	20.19	7.55	36.51	16.09	22.5	27.28	29.23	19.46	8.06	12.55	17.08	7.52
Merged-chr6-51606440-2	chr6	51606341	51606541	+	860.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61148.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	8.88	4.02	9.7	29.76	26.59	18.81	23.58	47.44	11.01	10.54	19.09	9.71
Merged-chr9-106452389-2	chr9	106452292	106452492	+	860.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029631, exon 4 of 4)	3' UTR (NM_029631, exon 4 of 4)	-1446.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	13.73	9.06	9.7	12.87	11.05	12.23	4.98	5.78	0.0	0.5	1.0	1.25
Merged-chr15-59811734-3	chr15	59811641	59811841	+	860.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16782.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	8.88	12.58	6.85	13.27	10.64	16.93	13.29	14.3	12.98	12.55	19.6	11.28
Merged-chr10-87841718-3	chr10	87841577	87841777	+	860.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16588.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	10.9	8.55	13.69	5.23	22.91	15.68	20.93	19.85	22.42	13.56	16.08	11.28
Merged-chr3-56183703-1	chr3	56183603	56183803	+	860.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030595)	promoter-TSS (NM_030595)	-2.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	2.02	1.51	1.14	1.61	10.23	10.98	3.65	13.74	1.18	4.02	8.04	4.39
Merged-chr4-134760967-4	chr4	134760915	134761115	+	860.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6989.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	12.11	12.07	7.99	13.67	17.59	10.98	15.28	15.87	8.65	7.53	13.57	12.84
Merged-chr8-71404929-2	chr8	71404833	71405033	+	860.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026636)	TTS (NM_026636)	-1079.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.85	3.77	3.42	2.41	8.59	19.13	10.96	10.74	10.23	12.05	15.58	10.34
Merged-chr18-9380867-3	chr18	9380767	9380967	+	860.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	69287.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	9.29	8.05	6.85	12.07	21.27	21.32	11.96	17.8	6.1	18.08	25.12	11.28
Merged-chr8-40647955-2	chr8	40647866	40648066	+	860.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-13174.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	8.08	1.76	6.85	11.26	9.82	6.9	12.62	13.91	22.62	13.05	46.23	21.93
Merged-chr18-80713027-3	chr18	80712925	80713125	+	860.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	46.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.86	9.56	9.13	10.86	10.64	5.33	9.63	8.94	14.36	16.07	10.55	4.39
Merged-chrX-159142314-1	chrX	159142214	159142414	+	860.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113468.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	4.44	3.52	5.13	3.22	9.0	6.9	6.64	9.9	6.88	2.01	5.02	6.89
Merged-chr9-7347349-3	chr9	7347228	7347428	+	860.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-46.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.86	11.07	9.13	13.67	20.86	30.42	16.28	36.81	16.72	30.13	17.59	3.45
Merged-chr1-78489205-3	chr1	78489123	78489323	+	860.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-326.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	12.92	7.55	6.85	14.88	13.91	11.6	8.3	12.53	13.57	7.53	20.6	8.46
Merged-chr2-12115721-2	chr2	12115632	12115832	+	860.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 28 of 29)	intron (NM_001001309, intron 28 of 29)	-185514.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	7.27	4.02	2.85	16.09	9.0	8.15	10.63	17.92	16.13	8.54	20.1	14.1
Merged-chr4-34730199-3	chr4	34730110	34730310	+	860.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027041)	promoter-TSS (NM_027041)	-4.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	9.29	10.82	9.7	12.47	9.41	12.23	13.29	14.92	14.95	11.55	17.59	12.22
Merged-chr5-75978355-1	chr5	75978255	75978455	+	860.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	73.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	7.67	5.28	2.28	2.41	6.14	6.27	19.27	10.37	0.79	1.51	1.51	3.76
Merged-chr13-112001326-1	chr13	112001226	112001426	+	860.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133390.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	2.01	0.0	1.21	10.64	6.27	6.64	8.13	8.26	0.5	5.02	3.45
Merged-chr3-51341843-3	chr3	51341738	51341938	+	860.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1194.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	8.08	6.29	11.41	11.66	6.55	10.98	12.29	9.08	16.92	6.53	8.54	25.06
Merged-chr1-55511735-3	chr1	55511626	55511826	+	860.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	105780.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.86	12.83	11.98	6.44	10.23	7.53	0.66	4.82	23.01	9.04	15.07	3.13
Merged-chr7-27408981-2	chr7	27408900	27409100	+	860.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_032610, exon 14 of 36)	exon (NM_032610, exon 14 of 36)	-12447.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	5.65	6.04	6.28	12.07	14.73	8.15	10.63	12.76	12.78	17.57	16.58	13.47
Merged-chr19-5751936-3	chr19	5751820	5752020	+	860.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008520, intron 16 of 27)	intron (NM_008520, intron 16 of 27)	11016.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	21.0	10.82	13.69	6.03	15.14	17.56	7.97	10.43	10.42	15.57	13.57	9.08
Merged-chr18-64962567-3	chr18	64962461	64962661	+	860.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-60966.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	14.54	14.34	11.41	10.46	9.82	19.76	6.64	17.94	40.32	32.64	38.69	15.35
Merged-chr2-72786068-2	chr2	72785997	72786197	+	860.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27620.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	5.25	8.8	12.55	10.46	4.5	2.82	4.32	2.8	23.21	24.1	13.06	15.35
Merged-chr19-56387932-3	chr19	56387818	56388018	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198059, intron 3 of 40)	intron (NM_198059, intron 3 of 40)	2120.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	3.63	4.78	15.4	10.05	22.5	20.38	20.93	27.67	6.69	10.54	18.59	11.9
Merged-chr1-23202845-3	chr1	23202724	23202924	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69445.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	4.04	7.29	7.99	17.29	11.86	4.7	11.63	8.61	10.42	14.56	4.52	5.95
Merged-chr10-13497328-3	chr10	13497226	13497426	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3702.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	14.94	19.12	19.4	12.47	15.55	8.47	7.97	26.38	16.13	12.55	19.6	8.14
Merged-chr4-132944929-3	chr4	132944839	132945039	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-22388.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	16.96	5.03	9.13	9.65	35.18	25.71	31.89	26.33	30.09	18.58	34.17	17.23
Merged-chr15-25532257-2	chr15	25532157	25532357	+	860.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-90293.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	16.56	11.57	14.83	11.66	6.95	8.78	8.3	16.35	7.47	3.51	8.54	9.4
Merged-chr6-134245843-3	chr6	134245730	134245930	+	860.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	L1MEf|LINE|L1	-150499.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	14.54	8.3	27.38	14.08	15.55	10.03	17.27	17.61	16.13	9.54	10.05	6.89
Merged-chr11-69124236-3	chr11	69124151	69124351	+	860.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033041)	TTS (NM_033041)	-2126.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	21.0	9.56	2.28	20.11	18.82	23.83	3.99	8.94	19.67	13.56	20.1	8.14
Merged-chr9-64016702-3	chr9	64016604	64016804	+	860.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	5355.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	7.67	9.31	32.52	15.28	11.45	16.31	10.3	16.74	11.8	11.05	10.05	10.96
Merged-chr6-56652367-2	chr6	56652298	56652498	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	52301.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.04	5.79	9.7	13.27	6.95	8.47	6.64	4.88	6.1	10.04	7.03	3.13
Merged-chr1-64035979-1	chr1	64035879	64036079	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 3 of 3)	intron (NM_033563, intron 3 of 3)	6522.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	4.44	5.53	11.98	7.24	17.18	6.9	10.3	20.83	2.16	2.01	8.04	6.89
Merged-chr3-94851903-1	chr3	94851803	94852003	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	14336.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.63	3.52	9.13	0.0	4.09	7.21	5.31	10.49	5.7	1.0	13.57	8.46
Merged-chr10-81550381-2	chr10	81550270	81550470	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5324.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	15.34	7.55	3.42	2.82	14.32	13.17	10.63	7.99	8.85	12.05	14.57	11.9
Merged-chr3-84570614-1	chr3	84570514	84570714	+	860.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	12011.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	5.65	11.82	10.27	4.83	4.91	2.82	4.32	3.17	13.96	4.02	21.1	9.4
Merged-chr3-116109527-1	chr3	116109427	116109627	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011693)	TTS (NM_011693)	20161.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	2.52	1.14	0.0	8.18	6.27	8.97	9.28	6.69	2.51	0.0	1.88
Merged-chr9-119220378-1	chr9	119220278	119220478	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_033303)	TTS (NR_033303)	-11273.0	NM_133980	102570.0	Mm.38775	NM_133980	ENSMUSG00000074028	Slc22a13	AI648912|OCTL1|OCTL3|ORCTL3	solute carrier family 22 (organic cation transporter), member 13	protein-coding	5.65	4.53	1.71	1.61	12.27	6.27	1.66	8.1	3.74	2.51	6.03	7.21
Merged-chr2-102754055-3	chr2	102753913	102754113	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-7253.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	12.11	10.82	5.13	16.89	11.05	12.54	9.3	12.53	11.41	13.05	19.6	8.46
Merged-chr4-100095885-1	chr4	100095785	100095985	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001312690)	promoter-TSS (NM_001312690)	94.0	NM_001312690	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	6.06	2.52	7.99	3.62	6.14	3.45	8.97	9.76	5.11	1.51	4.52	6.27
Merged-chr7-89236301-3	chr7	89236201	89236401	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	102486.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	15.34	7.55	27.38	31.37	20.86	20.38	34.55	40.71	22.03	13.56	10.55	7.83
Merged-chr15-86277560-3	chr15	86277445	86277645	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358062)	promoter-TSS (NM_001358062)	-130.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.27	18.11	11.41	11.66	17.59	21.32	11.63	25.77	18.69	15.06	29.14	14.72
Merged-chr1-36073823-2	chr1	36073725	36073925	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	5425.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	11.71	5.79	10.27	10.05	14.73	8.15	19.27	12.9	16.33	2.51	10.55	5.64
Merged-chr3-8964979-3	chr3	8964907	8965107	+	860.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	-861.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	15.75	6.54	1.14	14.88	15.96	18.81	6.98	20.72	13.18	14.56	27.64	11.9
Merged-chr6-137473136-3	chr6	137473046	137473246	+	860.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	46749.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	10.9	9.06	21.11	26.95	11.45	15.05	18.6	23.33	11.8	11.05	19.09	15.35
Merged-chr12-55484100-3	chr12	55484009	55484209	+	860.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8538.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	21.8	32.95	11.98	4.42	11.45	17.25	3.99	2.61	21.83	21.59	9.04	4.07
Merged-chr2-68879814-3	chr2	68879702	68879902	+	860.4389039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	18361.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	19.79	13.83	11.98	13.27	18.41	15.05	6.31	12.03	24.98	10.04	14.57	20.68
Merged-chr1-9798043-4	chr1	9797879	9798079	+	860.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-151.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	9.69	12.07	14.26	10.05	11.05	8.47	8.3	12.87	10.23	24.6	14.07	10.34
Merged-chr13-83609354-3	chr13	83609238	83609438	+	860.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	35731.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	23.02	8.55	24.53	27.35	22.5	21.64	7.97	25.29	13.77	19.08	9.55	13.16
Merged-chr6-33859786-2	chr6	33859676	33859876	+	860.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 13 of 17)	MLT1J|LTR|ERVL-MaLR	-169672.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.44	1.01	2.85	8.04	8.18	7.53	10.3	10.63	12.0	16.07	16.58	11.9
Merged-chr2-73470586-2	chr2	73470482	73470682	+	860.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15171.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	16.96	3.77	3.99	3.62	15.55	11.92	9.3	11.52	13.18	15.57	5.53	11.59
Merged-chr10-130314299-3	chr10	130314179	130314379	+	860.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8573.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	20.59	10.31	24.53	25.74	24.14	8.15	11.96	27.08	9.83	11.55	17.59	8.77
Merged-chr7-102032084-3	chr7	102031980	102032180	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 4 of 8)	intron (NM_029211, intron 4 of 8)	-13925.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.86	14.59	14.83	9.65	10.64	14.11	25.24	20.66	20.06	12.55	16.58	11.59
Merged-chr9-58401917-3	chr9	58401849	58402049	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	31445.0	NR_040727	73529.0	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	10.5	11.32	18.83	13.67	4.91	12.54	5.65	5.38	17.31	8.54	15.58	11.9
Merged-chr12-118296419-3	chr12	118296306	118296506	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166385, intron 3 of 5)	intron (NM_001166385, intron 3 of 5)	5034.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	6.06	5.03	8.56	9.65	39.68	18.19	17.27	24.7	36.39	31.13	23.62	10.96
Merged-chr10-94408875-3	chr10	94408772	94408972	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	96923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	9.29	16.1	11.41	13.67	14.73	15.68	8.64	10.37	21.24	16.57	18.59	7.21
Merged-chr6-87745406-3	chr6	87745323	87745523	+	860.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	14554.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	17.77	11.57	11.98	10.46	9.41	11.6	10.3	16.65	22.62	8.54	16.58	13.78
Merged-chr8-13840301-3	chr8	13840210	13840410	+	860.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2221.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	10.9	10.31	13.69	10.05	13.09	10.66	11.29	14.64	10.23	16.07	6.53	15.66
Merged-chr1-60669342-3	chr1	60669244	60669444	+	860.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77044.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	9.69	14.09	19.4	15.69	13.91	12.54	13.29	13.46	9.83	18.08	11.05	7.52
Merged-chr4-88788586-2	chr4	88788480	88788680	+	860.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161609).4	promoter-TSS (NM_001161609).4	-52.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	28.67	32.2	11.41	45.05	0.0	0.0	0.0	0.0	14.36	9.54	11.56	10.34
Merged-chr5-122059692-3	chr5	122059573	122059773	+	860.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9822.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.44	12.83	5.13	10.05	13.91	6.9	17.61	7.85	10.23	1.51	5.53	6.27
Merged-chr2-145866794-2	chr2	145866677	145866877	+	860.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-36464.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	10.5	10.56	12.55	12.87	13.5	11.29	21.92	23.75	4.92	10.54	15.07	5.01
Merged-chr7-53433588-2	chr7	53433481	53433681	+	860.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	458308.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	4.04	5.28	1.14	3.22	18.41	19.44	17.61	36.76	14.55	11.55	20.1	7.52
Merged-chr19-10183505-2	chr19	10183413	10183613	+	860.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	625.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.65	12.32	19.4	14.08	6.14	9.41	2.66	7.96	1.57	7.03	5.02	4.07
Merged-chr11-96910213-2	chr11	96910124	96910324	+	860.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030248, intron 10 of 13)	intron (NM_030248, intron 10 of 13)	6290.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	14.94	3.27	6.28	3.22	8.59	13.48	7.64	4.68	17.31	23.1	20.1	16.29
Merged-chr10-127312417-3	chr10	127312314	127312514	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-628.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	17.77	14.84	9.7	10.05	14.73	19.44	11.96	10.57	18.49	16.57	12.06	14.41
Merged-chr13-107639843-3	chr13	107639746	107639946	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-47551.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	14.54	19.37	22.82	20.51	2.86	8.47	7.31	14.36	9.05	1.51	12.56	4.39
Merged-chr16-44349563-1	chr16	44349463	44349663	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144550, intron 1 of 17)	intron (NM_144550, intron 1 of 17)	2162.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	1.21	1.01	5.13	6.84	10.64	6.9	6.31	9.53	3.74	6.03	8.04	5.01
Merged-chr3-61367245-1	chr3	61367145	61367345	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	2738.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.67	4.02	7.42	0.0	5.32	9.09	7.31	8.05	6.1	3.01	4.02	3.13
Merged-chr2-32237380-3	chr2	32237272	32237472	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145145, exon 2 of 20)	exon (NM_145145, exon 2 of 20)	689.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	23.02	10.31	9.7	11.66	17.59	14.11	1.99	11.92	20.65	19.58	16.08	11.59
Merged-chr5-62762523-1	chr5	62762423	62762623	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3654.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	2.83	3.02	4.56	14.48	9.41	10.35	8.97	15.87	8.46	4.52	5.53	2.51
Merged-chr2-90487683-1	chr2	90487583	90487783	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-8509.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.81	3.77	7.42	6.44	9.41	2.51	8.64	8.97	8.85	11.55	10.05	5.95
Merged-chr12-103339817-3	chr12	103339708	103339908	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	16193.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	14.94	13.58	13.12	19.71	6.14	1.88	7.31	10.26	12.19	6.53	18.09	8.46
Merged-chr10-51491835-3	chr10	51491755	51491955	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291894, intron 3 of 8)	intron (NM_001291894, intron 3 of 8)	957.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	9.69	18.61	10.27	12.47	12.27	16.93	12.95	9.08	17.31	21.09	10.05	12.84
Merged-chr8-36746188-2	chr8	36746114	36746314	+	860.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-13160.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.83	5.79	14.26	21.72	13.5	5.96	8.3	9.5	2.36	1.51	2.51	1.57
Merged-chr15-100048358-3	chr15	100048251	100048451	+	860.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	9687.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.88	10.82	23.39	17.29	15.55	10.03	7.64	11.16	20.06	13.56	21.1	19.74
Merged-chr8-14813514-2	chr8	14813421	14813621	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-75015.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.04	6.29	8.56	6.03	12.27	13.17	12.29	28.49	12.98	14.06	19.6	8.77
Merged-chr8-84567128-2	chr8	84566962	84567162	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 20 of 47)	PB1|SINE|Alu	95790.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.42	2.77	10.27	14.08	7.77	2.2	6.31	7.46	4.72	2.01	2.51	1.25
Merged-chr2-113441585-3	chr2	113441478	113441678	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	514.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	16.15	13.58	6.28	10.86	6.55	15.05	9.3	13.23	9.24	9.54	15.07	5.95
Merged-chr8-72295221-3	chr8	72295132	72295332	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-23830.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	10.9	3.77	5.7	8.45	7.77	16.31	13.29	10.09	19.08	17.57	26.13	19.74
Merged-chr12-35011718-2	chr12	35011629	35011829	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26968.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	10.09	9.56	7.42	18.1	9.41	9.09	7.64	9.84	4.52	6.03	4.02	3.13
Merged-chr7-83649066-1	chr7	83648966	83649166	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	6429.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	8.08	4.28	6.28	16.49	10.23	6.9	11.96	14.58	5.9	3.01	6.03	7.83
Merged-chr6-97343158-2	chr6	97343059	97343259	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-90379.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	6.86	6.54	3.99	5.23	18.0	5.96	5.31	10.6	2.95	5.02	12.56	8.46
Merged-chr7-126652830-3	chr7	126652716	126652916	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029339, intron 1 of 9)	intron (NM_029339, intron 1 of 9)	3507.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	30.69	17.36	17.11	13.67	14.32	25.71	7.64	3.62	10.23	20.59	12.06	9.4
Merged-chr9-97106693-1	chr9	97106593	97106793	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	4348.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	8.08	3.77	5.7	7.64	15.96	7.84	6.98	13.29	6.49	4.02	8.54	10.02
Merged-chr8-82356556-1	chr8	82356456	82356656	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	46030.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.85	4.28	17.68	4.83	13.5	6.9	10.3	20.44	0.0	1.51	0.0	0.94
Merged-chr2-11553052-3	chr2	11552948	11553148	+	860.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	881.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	12.52	12.83	8.56	8.85	11.45	14.74	21.26	12.81	14.75	14.56	14.07	12.22
Merged-chr10-84534049-3	chr10	84533905	84534105	+	860.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175451)	promoter-TSS (NM_175451)	-117.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	12.52	3.02	7.42	7.64	12.68	10.35	4.32	17.92	8.65	15.57	27.13	4.07
Merged-chr1-165724393-3	chr1	165724276	165724476	+	860.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-16282.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	12.52	13.83	22.82	23.33	13.5	14.11	11.29	18.84	15.54	7.53	11.05	9.71
Merged-chr16-55686627-2	chr16	55686526	55686726	+	860.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL2|LINE|L1	135512.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.04	6.79	9.13	4.83	15.96	15.37	3.99	10.12	11.6	14.06	10.55	7.21
Merged-chr7-80455786-3	chr7	80455732	80455932	+	860.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 21 of 21)	B1_Mus1|SINE|Alu	-50396.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	14.94	14.09	10.84	12.07	12.27	20.38	10.3	3.56	11.8	7.03	5.02	8.77
Merged-chr15-75600316-1	chr15	75600216	75600416	+	860.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3686.0	NM_026730	68453.0	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	1.62	1.01	3.42	3.22	13.91	9.72	13.95	10.71	3.74	5.02	6.53	7.83
Merged-chr3-27939105-3	chr3	27939031	27939231	+	860.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164056, intron 1 of 26)	intron (NM_001164056, intron 1 of 26)	451.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.06	14.59	5.13	15.69	11.05	11.92	16.61	12.34	7.47	10.54	15.58	12.84
Merged-chr1-67033428-3	chr1	67033296	67033496	+	860.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190984, intron 3 of 9)	intron (NM_001190984, intron 3 of 9)	5438.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	12.92	6.04	13.12	7.24	9.41	7.21	11.63	31.37	10.23	13.56	23.11	12.53
Merged-chr12-40460001-2	chr12	40459899	40460099	+	860.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13946.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.42	10.56	8.56	7.24	7.77	8.15	5.98	13.91	13.37	16.07	16.08	7.83
Merged-chr3-90293709-2	chr3	90293654	90293854	+	860.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23605.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	4.85	5.28	7.99	0.4	13.5	10.66	2.99	4.88	11.21	6.03	13.06	5.95
Merged-chr14-48896421-2	chr14	48896329	48896529	+	860.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	17556.0	NR_033783	66770.0	Mm.136954	NR_033783	ENSMUSG00000115008	4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	8.08	10.31	14.83	10.86	20.86	23.83	20.59	22.88	0.2	3.01	1.51	0.0
Merged-chr4-103321895-4	chr4	103321772	103321972	+	860.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025909, intron 3 of 8)	intron (NM_025909, intron 3 of 8)	8026.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	5.65	10.06	16.54	5.23	10.23	10.66	4.32	13.6	14.95	9.04	16.08	8.46
Merged-chr1-155494596-2	chr1	155494497	155494697	+	860.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32514.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	7.67	4.28	10.27	6.03	7.36	14.42	6.31	11.07	13.37	10.04	25.12	19.42
Merged-chr11-120457245-3	chr11	120457230	120457430	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152807)	promoter-TSS (NM_152807)	740.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	16.15	7.29	11.41	14.88	15.96	8.15	9.97	5.44	11.01	9.04	4.52	5.33
Merged-chr3-146500671-3	chr3	146500584	146500784	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	848.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	6.06	8.8	15.97	2.41	6.55	7.53	20.59	9.2	11.21	16.57	18.59	22.24
Merged-chr13-83064917-3	chr13	83064815	83065015	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-366582.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	9.69	9.31	6.85	11.66	29.46	20.38	25.24	44.22	14.36	13.56	18.09	9.71
Merged-chr2-117180673-3	chr2	117180583	117180783	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_033524, exon 7 of 7)	3' UTR (NM_033524, exon 7 of 7)	-4444.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	11.71	5.28	7.42	9.65	4.09	8.15	5.31	12.62	23.01	17.07	8.54	5.33
Merged-chr11-33932813-2	chr11	33932719	33932919	+	860.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190886, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	-30194.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	6.46	7.55	6.85	4.83	19.64	11.92	8.64	6.76	8.65	10.54	13.57	4.7
Merged-chr1-75234832-3	chr1	75234731	75234931	+	860.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1592.0	NM_001159884	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	14.94	3.27	10.27	5.63	13.09	12.86	10.63	15.42	18.88	22.09	21.61	5.01
Merged-chr10-93095986-3	chr10	93095870	93096070	+	860.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-14374.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	6.86	7.04	5.13	16.09	20.46	10.03	14.62	17.07	21.44	16.57	39.19	27.88
Merged-chr3-148987846-3	chr3	148987744	148987944	+	860.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-33209.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	10.09	14.34	12.55	19.71	22.5	11.6	14.95	27.11	21.24	11.55	18.59	10.34
Merged-chr15-90244120-3	chr15	90244010	90244210	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19750.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	27.46	19.87	29.09	27.75	2.45	3.14	3.65	5.64	33.04	20.59	34.67	24.12
Merged-chr18-31895004-1	chr18	31894904	31895104	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028866, intron 17 of 21)	intron (NM_028866, intron 17 of 21)	16899.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.81	1.01	6.85	2.82	7.36	4.39	0.66	7.57	1.18	0.5	1.0	0.63
Merged-chr1-171409336-1	chr1	171409236	171409436	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-1977.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	8.88	6.04	3.42	3.22	12.68	9.72	1.66	7.65	5.11	4.02	6.03	3.13
Merged-chr16-92039030-1	chr16	92038930	92039130	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-19292.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	2.42	1.26	2.28	2.01	0.82	4.39	2.33	1.54	3.34	3.01	1.51	3.76
Merged-chr2-169958436-2	chr2	169958317	169958517	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	4770.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.83	4.53	2.28	7.24	5.32	11.6	13.62	10.46	12.19	14.06	11.05	7.83
Merged-chr9-26783615-2	chr9	26783506	26783706	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153803, intron 6 of 19)	Lx8|LINE|L1	22862.0	NM_001310768	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	3.23	5.79	18.83	13.27	18.0	6.9	11.63	14.38	5.31	9.04	23.62	5.01
Merged-chr17-67359787-3	chr17	67359672	67359872	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5281.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	15.34	11.82	10.27	8.85	12.68	17.25	8.64	13.77	15.14	19.08	29.65	10.65
Merged-chr5-43876345-1	chr5	43876245	43876445	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7536.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.62	3.02	1.71	2.41	10.64	1.57	1.0	7.65	3.34	6.03	5.02	3.13
Merged-chr1-134725446-1	chr1	134725346	134725546	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	16146.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	14.13	5.28	21.11	10.46	4.91	2.51	5.31	2.69	3.54	3.51	8.04	1.88
Merged-chr4-136450477-1	chr4	136450377	136450577	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19284.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	7.27	5.03	11.98	3.62	7.36	4.39	11.63	12.39	7.28	2.01	4.52	5.01
Merged-chr8-35718548-1	chr8	35718448	35718648	+	860.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108011.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.81	0.0	1.14	0.8	0.82	0.0	0.33	1.6	16.52	9.04	24.12	10.96
Merged-chr16-45408841-1	chr16	45408741	45408941	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	212.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	6.06	3.27	2.28	8.85	6.95	2.82	3.99	6.36	3.15	4.02	3.01	5.33
Merged-chr11-84351468-3	chr11	84351366	84351566	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	156028.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	9.29	14.84	16.54	9.65	11.05	17.87	10.63	14.69	11.01	12.55	4.52	10.96
Merged-chr8-40294020-2	chr8	40293911	40294111	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7058.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	10.9	9.81	19.4	18.1	13.5	25.4	14.62	24.45	6.69	4.52	4.02	5.64
Merged-chr4-101720720-1	chr4	101720620	101720820	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	3313.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	2.42	1.51	1.14	2.41	9.41	4.08	6.31	5.27	6.1	6.53	4.52	2.51
Merged-chr1-152605702-1	chr1	152605602	152605802	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	B4A|SINE|B4	19515.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.02	1.01	0.0	2.41	4.09	9.72	1.33	8.94	3.74	2.51	8.04	1.57
Merged-chr11-63097454-3	chr11	63097336	63097536	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31546.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	8.48	5.28	13.69	6.03	13.91	25.09	17.94	21.73	41.3	17.07	36.68	23.18
Merged-chr5-32013242-2	chr5	32013146	32013346	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-123226.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.63	1.76	14.83	6.44	4.91	4.7	6.64	10.26	6.88	6.03	12.56	10.65
Merged-chr19-18643456-1	chr19	18643356	18643556	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145497, intron 7 of 8)	intron (NM_145497, intron 7 of 8)	11440.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	2.42	2.01	3.99	5.23	5.32	0.63	9.3	12.08	1.38	0.5	0.5	1.25
Merged-chr3-101600051-1	chr3	101599951	101600151	+	860.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4656.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.27	3.02	3.99	9.25	5.32	4.7	6.31	6.73	17.7	12.05	22.11	9.08
Merged-chr6-38478540-1	chr6	38478440	38478640	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177185, intron 7 of 16)	intron (NM_177185, intron 7 of 16)	-28785.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	6.46	2.52	6.85	2.01	5.73	8.15	9.3	15.0	7.67	3.01	4.02	4.07
Merged-chr13-29979438-1	chr13	29979338	29979538	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	4953.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	5.65	3.77	4.56	9.25	1.64	5.96	3.99	6.79	6.49	8.03	13.06	4.07
Merged-chr6-72163344-3	chr6	72163277	72163477	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40180.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	11.31	7.04	13.69	18.9	10.23	13.17	12.29	28.68	5.31	13.05	7.54	16.29
Merged-chr6-38650752-2	chr6	38650657	38650857	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12312.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.86	3.77	14.83	6.44	5.73	7.53	3.32	8.72	16.52	10.04	22.11	4.39
Merged-chr5-3432762-3	chr5	3432650	3432850	+	859.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	88857.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	10.9	8.55	18.25	18.5	16.36	22.26	11.29	9.45	26.16	14.56	28.14	15.66
Merged-chr15-103324158-3	chr15	103324061	103324261	+	859.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	10177.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	15.75	7.29	9.13	13.27	20.05	14.74	14.62	9.22	16.33	12.55	18.59	11.9
Merged-chr1-37317312-3	chr1	37317221	37317421	+	859.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	17483.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.65	20.12	18.25	9.25	9.82	15.68	10.96	12.53	11.41	6.03	3.52	2.19
Merged-chr16-48992617-3	chr16	48992510	48992710	+	859.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1502.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	8.88	10.06	7.99	6.84	16.77	13.48	5.98	9.87	22.03	15.06	17.59	7.52
Merged-chr4-40853213-3	chr4	40853207	40853407	+	859.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1230.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	10.5	5.79	5.7	5.63	12.27	20.07	10.63	5.47	17.51	9.54	16.08	9.08
Merged-chr4-11929572-3	chr4	11929463	11929663	+	859.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36150.0	NM_001098231	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	13.33	12.32	11.41	11.66	13.91	12.54	12.62	18.03	17.31	8.54	13.57	10.96
Merged-chr7-142444325-3	chr7	142444209	142444409	+	859.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009405)	TTS (NM_009405)	1841.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	12.11	5.79	12.55	8.85	31.91	26.34	15.94	28.04	23.21	15.06	24.62	9.08
Merged-chr9-64774532-3	chr9	64774416	64774616	+	859.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36495.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	16.15	9.81	23.39	32.58	22.5	19.76	25.24	32.22	8.06	10.04	18.09	15.04
Merged-chr7-24270386-2	chr7	24270287	24270487	+	859.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009567)	promoter-TSS (NM_009567)	-31.0	NM_009567	22755.0	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	6.06	5.03	6.85	9.25	16.36	5.33	16.94	16.46	11.6	13.05	21.1	7.52
Merged-chr1-74506587-2	chr1	74506424	74506624	+	859.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	464.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	12.11	9.81	3.42	17.7	8.18	5.64	15.61	5.92	8.85	12.05	4.52	9.71
Merged-chr12-8942041-5	chr12	8941956	8942156	+	859.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5873.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	5.25	16.1	7.99	10.05	5.32	3.76	6.31	9.56	10.62	6.53	15.07	6.27
Merged-chr1-64530185-2	chr1	64530089	64530289	+	859.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2615.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	11.71	10.06	15.97	5.23	8.59	5.64	7.31	11.02	5.31	10.04	10.05	10.65
Merged-chr13-21279729-2	chr13	21279611	21279811	+	859.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	12975.0	NM_010343	14780.0	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	12.11	19.37	13.12	23.33	11.86	14.74	9.3	6.79	10.42	2.01	4.02	2.19
Merged-chr15-64052191-3	chr15	64052092	64052292	+	859.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	7572.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.88	3.77	10.84	12.07	15.96	13.48	6.98	10.04	21.24	15.57	15.58	6.58
Merged-chr10-127342475-3	chr10	127342373	127342573	+	859.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-894.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	22.21	13.58	11.41	14.48	12.27	12.23	9.97	10.04	14.95	9.54	24.12	7.83
Merged-chr3-61595766-3	chr3	61595662	61595862	+	859.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	231255.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	9.29	23.64	15.4	15.28	29.05	10.98	14.95	20.47	23.01	13.56	15.07	8.46
Merged-chr6-113691239-2	chr6	113691121	113691321	+	859.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 11 of 11)	intron (NM_001113553, intron 11 of 11)	-5829.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	16.15	5.03	8.56	5.23	17.18	8.78	14.95	21.98	4.72	11.05	6.03	10.96
Merged-chr17-8801098-5	chr17	8800925	8801125	+	859.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011866)	promoter-TSS (NM_011866)	-720.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	18.98	21.88	15.4	22.12	24.96	16.62	26.57	27.36	9.44	5.52	11.56	6.27
Merged-chr4-137594791-3	chr4	137594688	137594888	+	859.794434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 1 of 26)	CpG	616.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	19.38	11.57	3.99	10.05	9.41	7.53	3.99	11.47	13.18	13.05	18.09	15.35
Merged-chr17-50361881-3	chr17	50361770	50361970	+	859.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68250.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	9.29	7.55	20.54	12.87	13.09	8.15	10.3	14.16	22.23	17.07	20.6	14.72
Merged-chr18-46153836-3	chr18	46153728	46153928	+	859.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	44990.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.86	10.56	21.68	20.11	22.09	11.29	3.99	8.33	15.93	9.54	13.06	9.4
Merged-chr1-170950803-2	chr1	170950683	170950883	+	859.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23200.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.04	3.27	6.28	0.8	10.64	9.09	8.97	9.31	17.31	21.09	17.08	7.21
Merged-chr14-64633569-3	chr14	64633431	64633631	+	859.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19000.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	10.9	12.32	15.97	8.04	14.73	8.78	1.33	8.05	13.57	15.57	11.05	10.96
Merged-chr2-118700360-3	chr2	118700255	118700455	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	3608.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	5.25	13.83	17.68	14.08	17.18	10.35	6.98	10.93	22.23	14.56	18.09	7.52
Merged-chr5-32761877-1	chr5	32761777	32761977	+	859.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	ORR1B1-int|LTR|ERVL-MaLR	-15535.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.23	0.0	1.14	0.0	0.41	0.0	3.32	0.84	19.28	13.05	30.15	9.4
Merged-chr16-94774154-1	chr16	94774054	94774254	+	859.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025584, intron 3 of 4)	intron (NM_001025584, intron 3 of 4)	82536.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	1.62	2.01	5.7	1.61	9.0	5.33	13.62	12.87	4.13	0.0	5.53	4.7
Merged-chr9-24510682-3	chr9	24510575	24510775	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7535.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	13.33	5.79	12.55	18.9	14.32	10.03	7.97	22.37	10.23	4.02	7.54	6.89
Merged-chr2-129310829-3	chr2	129310726	129310926	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-854.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	10.09	6.04	17.11	6.44	18.41	16.93	18.93	27.64	13.96	8.03	8.54	7.52
Merged-chr13-60605649-1	chr13	60605549	60605749	+	859.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3438.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.44	3.52	7.42	2.82	6.55	2.2	10.3	11.64	4.92	0.0	7.03	3.76
Merged-chr7-80883231-3	chr7	80883099	80883299	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18070.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	9.69	9.56	5.13	4.83	5.73	11.92	7.31	5.94	6.88	10.04	13.57	7.21
Merged-chr12-100004828-3	chr12	100004733	100004933	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	L1M3|LINE|L1	40334.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	10.9	6.04	13.12	7.64	11.86	9.72	2.33	11.97	12.0	6.03	18.09	12.53
Merged-chr11-97661863-2	chr11	97661764	97661964	+	859.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1548.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	20.19	10.31	5.7	7.64	7.36	13.48	9.97	7.04	17.31	10.04	7.54	4.07
Merged-chr3-144688431-2	chr3	144688349	144688549	+	859.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	31886.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	14.13	4.53	10.27	17.7	19.64	13.8	16.94	24.5	6.1	5.02	7.03	9.4
Merged-chr4-117042690-2	chr4	117042600	117042800	+	859.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111277, intron 3 of 11)	B1_Mur3|SINE|Alu	23298.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	4.44	4.78	2.28	4.83	6.55	5.02	17.61	6.5	6.88	5.52	18.09	13.16
Merged-chr3-51208885-3	chr3	51208774	51208974	+	859.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	-15573.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	8.08	10.82	16.54	1.61	30.27	22.89	14.95	12.08	30.49	17.57	18.09	8.14
Merged-chr15-59760304-2	chr15	59760208	59760408	+	859.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34651.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.06	4.78	2.85	7.64	10.64	19.13	14.62	15.59	13.18	13.56	22.61	13.47
Merged-chr4-132380950-3	chr4	132380852	132381052	+	859.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-27266.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	3.63	12.83	27.38	15.28	6.14	12.86	5.65	7.43	12.0	11.55	16.58	16.29
Merged-chr6-94222434-1	chr6	94222334	94222534	+	859.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	15008.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.4	4.02	1.14	0.4	9.82	21.64	9.3	14.44	2.75	2.01	2.01	0.94
Merged-chr2-156411495-2	chr2	156411402	156411602	+	859.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-9407.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	13.73	11.07	5.7	11.26	5.73	15.05	6.64	2.94	19.28	19.58	23.62	10.96
Merged-chr9-121641612-3	chr9	121641512	121641712	+	859.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026915)	promoter-TSS (NM_026915)	-19.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	11.71	10.56	9.13	5.23	11.45	7.84	7.97	3.34	14.95	16.07	3.01	8.46
Merged-chr6-39779407-3	chr6	39779336	39779536	+	859.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31500.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	11.71	7.04	22.82	20.91	8.59	5.64	11.63	20.02	14.55	13.56	12.56	5.33
Merged-chr19-11375454-3	chr19	11375336	11375536	+	859.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310331)	promoter-TSS (NM_001310331)	-52.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	13.73	16.1	34.23	16.89	29.86	15.05	33.22	34.54	9.64	17.07	10.55	7.52
Merged-chr16-70353171-2	chr16	70353026	70353226	+	859.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	(GGA)n|Simple_repeat|Simple_repeat	39177.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.81	4.28	1.14	2.01	4.09	3.14	5.98	3.73	9.05	15.57	15.58	11.9
Merged-chr4-127015792-3	chr4	127015682	127015882	+	859.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5519.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	5.25	10.56	1.14	13.27	20.86	15.05	3.32	10.99	46.62	37.66	47.74	32.89
Merged-chrX-12873885-3	chrX	12873766	12873966	+	859.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-63007.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	4.85	10.82	5.7	7.24	21.68	14.42	5.65	12.11	21.83	12.05	24.62	12.22
Merged-chr1-131092407-3	chr1	131092305	131092505	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	5438.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	23.42	21.63	8.56	10.86	27.0	47.98	7.64	14.22	43.86	34.14	33.16	17.86
Merged-chr6-116050786-1	chr6	116050686	116050886	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-55781.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	2.83	2.26	9.13	12.07	10.64	6.59	4.98	8.19	2.95	1.0	5.02	3.13
Merged-chr13-97249182-2	chr13	97249087	97249287	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007930, intron 2 of 2)	intron (NM_007930, intron 2 of 2)	8082.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	25.84	27.42	5.7	4.02	4.09	9.41	2.99	6.67	7.87	7.03	11.56	13.16
Merged-chr2-59339794-2	chr2	59339611	59339811	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46971.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	1.62	5.28	3.42	3.22	3.27	5.33	6.31	8.89	2.75	2.01	14.07	4.39
Merged-chr1-105863122-2	chr1	105863014	105863214	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	82391.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	10.5	4.02	3.99	13.27	2.86	10.35	10.63	10.54	3.93	3.01	4.52	6.58
Merged-chr19-53536306-2	chr19	53536208	53536408	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6990.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	12.11	8.8	9.13	4.42	2.86	1.57	8.64	19.88	2.75	1.0	0.0	1.25
Merged-chr16-77002672-1	chr16	77002572	77002772	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8209.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.25	1.71	0.4	3.27	5.02	7.31	8.24	5.51	2.01	8.04	1.88
Merged-chr3-8619495-1	chr3	8619395	8619595	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8556.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	4.04	3.27	4.56	3.62	5.32	4.7	6.31	10.43	3.34	0.5	11.05	2.51
Merged-chr7-43563455-3	chr7	43563362	43563562	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1092.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	24.23	10.56	15.4	16.89	17.59	16.31	9.63	16.82	15.74	9.04	11.56	5.33
Merged-chrX-57293678-1	chrX	57293578	57293778	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358573, intron 4 of 20)	intron (NM_001358573, intron 4 of 20)	32923.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	2.42	2.26	7.99	8.45	8.18	3.45	6.31	11.13	1.97	1.0	1.0	0.63
Merged-chr16-38095629-2	chr16	38095473	38095673	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	B2_Mm2|SINE|B2	-6313.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.42	8.55	1.14	8.45	7.77	4.39	3.32	4.71	6.49	7.03	4.02	4.07
Merged-chr1-161071512-2	chr1	161071416	161071616	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	749.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	1.21	5.28	1.14	4.42	5.32	10.66	8.64	8.19	12.59	17.07	14.07	8.77
Merged-chr11-110436337-2	chr11	110436247	110436447	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	MER20|DNA|hAT-Charlie	37245.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	13.33	7.29	3.42	5.23	6.55	1.57	3.32	3.2	14.75	17.57	6.53	5.64
Merged-chr17-31071067-3	chr17	31070990	31071190	+	859.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	13396.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	11.31	7.29	5.7	6.84	26.18	17.87	18.6	17.24	22.42	7.53	17.59	11.28
Merged-chr11-117949872-3	chr11	117949772	117949972	+	859.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19494.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	14.54	8.55	6.28	3.22	11.45	30.42	8.3	9.56	15.54	8.54	19.09	9.4
Merged-chr2-103969305-6	chr2	103969198	103969398	+	859.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-259.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	8.08	2.52	4.56	6.03	9.82	5.96	1.66	4.23	10.82	9.54	7.03	7.83
Merged-chr3-94658852-3	chr3	94658750	94658950	+	859.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011656)	promoter-TSS (NM_011656)	22.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	25.04	13.83	9.13	14.48	21.27	33.55	14.28	3.03	13.57	13.56	10.55	11.59
Merged-chr5-135667011-3	chr5	135666900	135667100	+	859.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-22145.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	8.48	4.02	18.25	9.25	18.0	18.5	20.26	13.57	11.6	11.55	16.58	10.34
Merged-chr18-82942944-3	chr18	82942854	82943054	+	859.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-22394.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	29.88	21.88	22.25	16.89	10.64	25.4	14.62	18.84	19.28	12.05	10.05	7.21
Merged-chr8-108911707-3	chr8	108911630	108911830	+	859.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-25130.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	11.71	9.81	13.12	7.24	10.64	13.17	4.32	14.78	20.65	18.58	21.61	5.33
Merged-chr14-106669512-3	chr14	106669413	106669613	+	859.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-182993.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	15.75	7.55	12.55	8.04	20.46	16.31	20.26	36.42	17.11	15.57	20.1	8.77
Merged-chr11-70490399-3	chr11	70490276	70490476	+	859.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-14898.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	13.33	5.79	11.98	3.62	9.0	23.2	13.62	10.54	21.05	14.06	15.58	12.22
Merged-chr5-150665017-2	chr5	150664968	150665168	+	859.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362416, intron 1 of 7)	intron (NM_001362416, intron 1 of 7)	544.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	6.46	8.3	9.13	7.64	7.36	10.35	14.62	9.76	10.42	18.58	15.07	18.48
Merged-chr19-41402226-2	chr19	41402158	41402358	+	859.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17188.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.06	6.79	10.84	9.25	11.45	11.6	7.31	13.6	2.75	15.57	9.55	4.07
Merged-chr10-77253010-2	chr10	77252910	77253110	+	859.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6213.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	10.09	6.79	3.99	4.83	10.64	10.66	4.32	9.42	8.65	11.55	9.04	4.7
Merged-chr1-58423550-3	chr1	58423418	58423618	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042634, intron 1 of 12)	CpG	570.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	13.33	15.34	8.56	8.04	12.27	28.85	17.61	9.62	19.28	18.08	14.07	12.53
Merged-chr18-83430875-1	chr18	83430775	83430975	+	859.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104991.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	4.04	1.01	3.99	5.23	8.59	5.33	7.97	11.64	1.38	2.51	6.53	1.88
Merged-chr2-57117740-3	chr2	57117645	57117845	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-2707.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	11.31	6.54	10.27	8.04	16.77	23.52	14.62	19.79	24.98	22.59	48.74	14.72
Merged-chr9-71896103-3	chr9	71896012	71896212	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-16.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	7.27	8.3	9.7	12.47	16.77	12.86	9.3	16.71	19.28	17.57	32.66	10.34
Merged-chr4-24619915-3	chr4	24619828	24620028	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355618, intron 9 of 9)	RMER15|LTR|ERVL	123477.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	8.88	6.29	13.12	15.28	18.82	16.31	15.94	25.09	20.46	20.08	30.65	7.83
Merged-chr7-19956692-3	chr7	19956577	19956777	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5934.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	12.11	10.31	10.84	6.44	11.86	6.9	5.65	6.45	16.52	10.54	8.54	10.65
Merged-chr5-118556516-3	chr5	118556409	118556609	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4210.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	16.96	16.35	28.52	24.94	7.77	20.38	19.6	23.27	9.05	5.52	12.56	15.66
Merged-chr15-36164916-3	chr15	36164818	36165018	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081253)	promoter-TSS (NM_001081253)	-34.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	20.59	15.85	13.69	8.85	16.36	14.11	11.96	16.6	21.24	9.04	15.07	8.46
Merged-chr6-88832112-3	chr6	88832009	88832209	+	859.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9826.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	14.94	11.32	29.66	23.73	10.23	13.8	15.94	20.86	18.69	10.54	14.57	18.48
Merged-chr2-171329075-3	chr2	171328971	171329171	+	859.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	597264.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	9.69	5.79	2.28	10.86	13.91	17.56	8.97	34.79	19.08	23.6	21.1	9.71
Merged-chr1-84321572-3	chr1	84321452	84321652	+	859.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-36907.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	7.67	4.28	14.83	19.71	24.55	20.38	19.93	30.14	20.65	22.59	11.05	14.41
Merged-chr17-5397647-3	chr17	5397554	5397754	+	859.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21113.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	16.15	6.54	12.55	3.22	14.73	10.98	4.32	5.89	17.11	24.1	28.14	14.1
Merged-chr7-75782668-3	chr7	75782560	75782760	+	859.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65678.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	12.11	16.85	17.11	22.12	20.46	21.64	3.65	10.32	32.06	14.56	12.06	13.78
Merged-chr8-106165565-3	chr8	106165478	106165678	+	859.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133792)	TTS (NM_133792)	-3276.0	NR_151676	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	18.57	14.09	23.39	10.46	11.45	24.77	6.64	13.65	20.65	11.05	24.62	8.77
Merged-chr14-56034610-3	chr14	56034508	56034708	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4113.0	NM_010782	17232.0	Mm.436621	NM_010782	ENSMUSG00000071361	Mcpt9	MMCP-1|MMCP-9|MMCP9	mast cell protease 9	protein-coding	16.96	8.3	25.67	20.11	12.27	14.42	9.3	11.86	10.62	14.56	17.59	6.89
Merged-chr2-91987729-3	chr2	91987628	91987828	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011957, intron 8 of 11)	intron (NM_011957, intron 8 of 11)	-24165.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	13.73	13.83	6.85	12.87	19.23	12.86	6.64	7.35	17.9	10.04	13.57	15.04
Merged-chr13-44996499-2	chr13	44996392	44996592	+	859.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5604.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.25	6.54	7.99	6.84	7.77	6.27	9.3	7.57	12.19	2.01	9.04	9.4
Merged-chr12-110908018-2	chr12	110907919	110908119	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175336, intron 3 of 20)	intron (NM_175336, intron 3 of 20)	18755.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	14.54	7.8	2.85	8.45	8.18	14.74	14.95	11.21	4.33	8.54	15.58	5.64
Merged-chr5-5243783-1	chr5	5243683	5243883	+	859.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 3 of 14)	intron (NM_011074, intron 3 of 14)	22285.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.63	3.02	4.56	4.02	8.18	12.54	7.31	8.44	6.49	4.02	15.58	7.52
Merged-chr5-105056258-3	chr5	105056148	105056348	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-2687.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	9.69	6.04	15.4	17.7	13.5	6.9	13.62	9.56	18.49	10.54	6.03	13.16
Merged-chr17-44351557-2	chr17	44351456	44351656	+	859.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162984.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.81	1.01	0.0	0.0	13.09	7.84	22.92	29.05	12.98	13.05	20.1	12.22
Merged-chr4-6369961-3	chr4	6369863	6370063	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4283.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.67	9.31	12.55	14.08	15.96	10.98	9.3	21.7	14.95	8.03	18.59	11.28
Merged-chr1-181015720-3	chr1	181015613	181015813	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1856.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	7.67	6.54	13.69	21.32	13.91	10.03	20.59	15.93	16.33	11.55	30.15	17.86
Merged-chr9-75558565-3	chr9	75558476	75558676	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	1081.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	12.52	13.08	12.55	10.46	14.73	22.89	18.6	13.01	10.82	13.56	17.08	9.08
Merged-chr10-7820393-3	chr10	7820302	7820502	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-12068.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	10.9	21.13	11.98	25.34	7.77	16.31	2.99	10.09	9.05	4.02	14.57	10.34
Merged-chr7-19876504-3	chr7	19876407	19876607	+	859.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11458.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	14.94	12.83	6.85	5.63	16.77	17.87	7.97	5.38	11.8	17.57	9.04	10.34
Merged-chr3-133526527-3	chr3	133526394	133526594	+	859.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	L1MCa|LINE|L1	17896.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.06	13.08	9.13	10.05	14.32	13.8	14.28	12.42	13.37	13.56	19.6	15.98
Merged-chr6-117900834-3	chr6	117900730	117900930	+	859.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	490.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	8.08	10.82	12.55	7.64	10.64	22.26	6.64	11.64	16.52	26.11	26.13	18.8
Merged-chr1-127207310-3	chr1	127207180	127207380	+	859.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	2294.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.06	11.07	21.68	12.07	14.73	8.47	11.29	13.26	9.05	9.04	9.04	8.14
Merged-chr18-5764420-2	chr18	5764319	5764519	+	859.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	171772.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.86	11.82	10.84	12.47	8.59	5.96	2.99	2.72	25.37	10.04	17.59	16.29
Merged-chr5-65484126-3	chr5	65484010	65484210	+	859.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	MLT-int|LTR|ERVL-MaLR	8725.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	19.38	11.57	11.98	11.26	15.96	24.46	8.3	16.51	15.74	18.58	24.62	8.46
Merged-chr5-135914402-3	chr5	135914298	135914498	+	859.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	20243.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	6.86	9.56	13.69	18.9	21.27	34.49	27.24	42.11	15.93	11.55	25.12	15.98
Merged-chr4-87368288-3	chr4	87368195	87368395	+	859.105591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137755.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	9.69	11.57	9.13	18.9	17.18	15.68	10.96	11.72	16.92	12.05	20.1	6.89
Merged-chr12-85345081-3	chr12	85344984	85345184	+	859.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5722.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	10.09	10.82	4.56	9.25	11.45	12.23	11.29	13.07	8.85	11.05	7.54	7.83
Merged-chr12-59133794-2	chr12	59133693	59133893	+	859.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	2340.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	11.71	9.81	15.97	10.05	20.86	11.92	17.94	13.21	12.78	4.52	10.05	3.76
Merged-chr13-48552572-3	chr13	48552538	48552738	+	859.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14366.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	4.04	1.26	3.99	5.23	4.5	5.96	3.32	4.79	6.1	4.02	4.52	5.64
Merged-chr6-83689604-3	chr6	83689516	83689716	+	859.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11759.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	15.34	8.8	11.98	10.05	7.36	21.32	22.26	16.26	17.7	15.57	14.07	4.07
Merged-chr6-47757832-4	chr6	47757800	47758000	+	859.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4975.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	3.23	3.27	0.0	8.45	2.45	4.7	7.64	0.0	20.46	19.58	20.1	8.77
Merged-chr19-10291949-3	chr19	10291856	10292056	+	859.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	12921.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	15.75	10.31	14.26	10.46	13.09	12.54	3.99	9.45	15.54	22.09	14.57	6.89
Merged-chr1-91366360-3	chr1	91366246	91366446	+	859.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173395)	promoter-TSS (NM_173395)	-84.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	15.34	15.09	10.27	10.86	8.18	15.37	7.31	13.07	9.64	4.02	9.55	9.71
Merged-chr17-62784107-3	chr17	62783982	62784182	+	859.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	97235.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	16.15	8.55	6.85	12.07	11.86	6.27	5.31	10.37	16.52	18.58	13.06	6.89
Merged-chr11-11707011-1	chr11	11706911	11707111	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025597, intron 2 of 7)	intron (NM_001025597, intron 2 of 7)	16834.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.04	3.02	6.85	9.65	7.36	5.96	12.29	13.49	11.01	3.01	5.53	4.7
Merged-chr10-52284748-2	chr10	52284642	52284842	+	859.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025705, intron 3 of 10)	intron (NM_025705, intron 3 of 10)	51123.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	8.88	6.29	5.7	3.62	32.32	26.03	11.96	20.66	6.49	1.0	2.51	5.95
Merged-chr13-75878103-1	chr13	75878003	75878203	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028493, intron 9 of 11)	intron (NM_028493, intron 9 of 11)	38217.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	15.34	6.54	7.42	12.87	6.55	10.66	4.65	13.29	21.44	9.04	9.55	2.19
Merged-chr2-167760944-1	chr2	167760844	167761044	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69767.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	1.62	3.27	5.7	6.84	13.09	10.03	7.31	7.49	6.29	8.54	3.52	9.71
Merged-chr5-53880943-1	chr5	53880843	53881043	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144517, intron 15 of 20)	intron (NM_144517, intron 15 of 20)	71316.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.81	1.01	0.0	0.4	3.27	2.82	7.64	5.1	0.0	2.51	3.52	0.31
Merged-chr10-4079399-1	chr10	4079299	4079499	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106324.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	2.83	3.52	4.56	9.65	5.73	5.33	4.65	10.07	5.9	7.03	9.55	3.13
Merged-chr6-131354599-1	chr6	131354499	131354699	+	859.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33851.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	3.23	3.27	3.42	0.8	0.0	1.57	2.66	3.31	13.77	17.57	15.07	5.95
Merged-chr13-37847765-2	chr13	37847664	37847864	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	20371.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.85	4.78	6.85	4.02	16.36	16.93	12.95	17.27	13.18	13.05	16.58	2.82
Merged-chr7-4478755-1	chr7	4478655	4478855	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026146, intron 19 of 19)	intron (NM_026146, intron 19 of 19)	-7871.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.81	2.26	3.42	4.42	0.0	2.82	1.33	1.65	1.57	1.51	5.02	7.52
Merged-chr19-32939918-1	chr19	32939818	32940018	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	182341.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.06	5.53	3.42	2.82	2.45	4.7	7.97	6.5	0.98	8.54	4.02	3.76
Merged-chr5-139381446-1	chr5	139381346	139381546	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	807.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	2.02	3.77	7.42	8.04	13.09	6.9	2.99	9.36	10.03	8.54	7.54	6.89
Merged-chr10-27366236-1	chr10	27366136	27366336	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 5 of 63)	intron (NM_008481, intron 5 of 63)	-23630.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	8.08	4.78	3.42	10.86	8.18	10.98	15.94	24.67	0.39	0.0	1.0	0.31
Merged-chr12-78901680-3	chr12	78901589	78901789	+	859.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013738, intron 1 of 8)	intron (NM_013738, intron 1 of 8)	5249.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	9.69	13.58	20.54	9.65	13.09	14.42	16.94	20.07	10.82	11.05	26.63	13.78
Merged-chr11-82099394-1	chr11	82099294	82099494	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-2451.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	2.42	5.28	11.41	4.83	6.55	14.11	3.99	8.52	17.11	9.04	4.02	4.39
Merged-chr12-111401623-1	chr12	111401523	111401723	+	859.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5186.0	NM_001101503	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	6.86	5.53	14.83	4.83	2.05	10.66	1.66	3.39	14.55	5.52	14.57	12.22
Merged-chr14-101658375-1	chr14	101658275	101658475	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016723, intron 2 of 8)	intron (NM_016723, intron 2 of 8)	4408.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	2.42	6.29	6.85	1.61	7.77	1.88	5.98	8.61	8.26	7.53	6.03	4.39
Merged-chr9-100382666-1	chr9	100382566	100382766	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103807.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.04	2.77	0.0	8.04	4.09	10.35	2.99	9.11	8.85	3.51	14.57	1.88
Merged-chr10-5057111-1	chr10	5057011	5057211	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079686, intron 41 of 54)	intron (NM_001079686, intron 41 of 54)	11952.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	3.63	1.26	3.42	5.23	9.0	3.14	1.99	8.19	2.36	4.52	3.52	6.89
Merged-chr9-5299321-1	chr9	5299221	5299421	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009807, exon 2 of 10)	exon (NM_009807, exon 2 of 10)	804.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	7.67	5.03	7.42	4.02	6.95	6.9	9.3	8.52	7.47	6.53	3.01	4.07
Merged-chr2-130783929-1	chr2	130783829	130784029	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029432, intron 12 of 36)	intron (NM_029432, intron 12 of 36)	20172.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	1.21	0.5	0.0	0.8	4.91	5.33	5.98	7.99	0.39	1.0	2.01	0.31
Merged-chr2-121866939-1	chr2	121866839	121867039	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001205371)	promoter-TSS (NM_001205371)	-31.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	4.44	3.77	2.85	2.41	0.82	2.82	5.65	3.31	3.34	3.01	0.5	1.88
Merged-chr10-93375149-3	chr10	93375054	93375254	+	859.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38943.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	18.17	16.6	23.96	21.32	45.82	32.3	19.6	32.22	8.06	4.02	13.57	5.33
Merged-chr10-99393244-2	chr10	99393152	99393352	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130021.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.04	5.53	8.56	2.41	19.23	26.97	12.62	14.16	11.8	12.05	13.06	4.07
Merged-chr7-98605803-1	chr7	98605703	98605903	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172280, intron 14 of 19)	intron (NM_172280, intron 14 of 19)	50766.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.0	1.51	15.97	4.02	6.55	1.57	6.98	7.6	6.88	3.01	4.52	4.07
Merged-chr11-16670456-2	chr11	16670329	16670529	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81774.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	7.67	3.52	9.7	12.07	4.5	10.03	7.64	13.79	10.62	10.04	10.05	8.46
Merged-chr11-76630258-1	chr11	76630158	76630358	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42212.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	1.62	4.78	2.28	7.64	4.09	2.2	4.98	8.5	2.75	5.52	9.55	2.51
Merged-chr19-38394784-1	chr19	38394684	38394884	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1196.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	4.85	2.77	9.13	4.02	2.45	0.63	6.98	9.87	6.49	1.0	7.54	1.57
Merged-chr2-6258624-3	chr2	6258529	6258729	+	858.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45635.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	16.15	3.02	6.85	9.25	12.27	12.23	8.97	19.71	12.39	10.04	19.09	15.35
Merged-chr1-156673787-3	chr1	156673656	156673856	+	858.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023141, intron 1 of 5)	intron (NM_023141, intron 1 of 5)	583.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.65	10.82	8.56	6.44	22.5	7.84	20.26	8.58	14.16	17.07	15.07	12.84
Merged-chr12-55430158-3	chr12	55430075	55430275	+	858.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	31350.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.86	12.58	11.98	6.84	12.68	28.54	11.63	13.43	12.0	24.6	15.58	6.89
Merged-chr19-16085273-3	chr19	16085179	16085379	+	858.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47552.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.27	7.29	29.09	9.65	18.41	20.38	9.97	18.5	24.59	21.59	9.04	11.59
Merged-chr6-86480503-3	chr6	86480432	86480632	+	858.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131125, intron 1 of 4)	intron (NR_131125, intron 1 of 4)	298.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	4.04	10.31	7.42	10.86	5.73	16.31	17.61	8.55	20.65	17.07	11.05	8.14
Merged-chr15-43364635-2	chr15	43364528	43364728	+	858.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81892.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	14.54	15.59	19.97	26.14	7.36	0.63	3.99	10.77	6.1	3.01	2.01	3.13
Merged-chr7-45340827-2	chr7	45340716	45340916	+	858.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029741, intron 27 of 29)	intron (NM_029741, intron 27 of 29)	5547.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	16.56	4.02	5.13	6.84	12.27	8.47	8.3	9.64	14.16	13.05	15.07	4.7
Merged-chr2-102009784-3	chr2	102009653	102009853	+	858.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	123491.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	5.65	5.79	6.85	8.04	16.36	18.5	30.56	32.02	28.52	20.08	17.59	25.37
Merged-chr9-62847889-2	chr9	62847792	62847992	+	858.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033175, intron 5 of 6)	intron (NM_001033175, intron 5 of 6)	9105.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	11.71	9.31	8.56	4.02	14.73	17.56	3.65	9.73	8.06	10.54	8.04	11.59
Merged-chr2-3526511-3	chr2	3526401	3526601	+	858.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177647)	TTS (NM_177647)	13436.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	10.9	7.55	6.28	14.48	21.68	10.03	6.31	14.33	24.0	19.58	19.09	3.76
Merged-chr3-89216016-3	chr3	89215850	89216050	+	858.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149740)	promoter-TSS (NR_149740)	-638.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	6.46	9.81	5.13	7.64	4.09	6.9	7.64	4.6	10.42	8.03	2.51	11.28
Merged-chr4-137953589-2	chr4	137953487	137953687	+	858.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 15 of 19)	(TTC)n|Simple_repeat|Simple_repeat	-39869.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.65	4.53	7.42	3.22	6.95	5.02	1.66	8.69	12.0	4.52	18.59	11.28
Merged-chr1-174052351-2	chr1	174052239	174052439	+	858.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1964.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	2.42	2.26	3.42	3.22	11.05	21.64	11.63	7.99	16.72	16.07	48.24	13.78
Merged-chr12-51729221-1	chr12	51729121	51729321	+	858.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 4 of 5)	intron (NM_001329698, intron 4 of 5)	-37307.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	4.85	3.02	2.28	0.8	5.32	8.15	7.97	7.54	1.18	2.51	2.01	3.45
Merged-chr14-66791971-3	chr14	66791862	66792062	+	858.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76638.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	15.34	8.8	8.56	4.42	13.09	15.99	7.97	11.92	27.34	18.08	28.14	8.14
Merged-chr9-47703803-3	chr9	47703694	47703894	+	858.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114414.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	8.88	12.58	21.68	7.24	9.0	9.41	11.63	6.7	10.82	5.52	9.55	9.08
Merged-chr16-31210029-2	chr16	31209925	31210125	+	858.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8787.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	8.08	5.53	10.27	5.23	14.32	14.42	15.94	17.27	17.7	10.04	11.05	10.65
Merged-chr1-20891157-3	chr1	20891071	20891271	+	858.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	623.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	20.19	15.34	7.42	10.86	17.18	17.56	16.28	11.27	18.69	13.05	15.58	10.02
Merged-chr15-83037870-3	chr15	83037724	83037924	+	858.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4427.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.06	10.56	9.13	4.83	8.18	11.92	8.97	7.51	15.54	13.56	11.05	3.45
Merged-chr1-152686070-2	chr1	152685981	152686181	+	858.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60864.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.88	5.28	8.56	11.66	8.59	23.52	24.25	19.32	16.13	15.57	10.55	6.58
Merged-chr7-29044369-2	chr7	29044255	29044455	+	858.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 83 of 105)	intron (NM_009109, intron 83 of 105)	39339.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	7.27	13.58	6.85	7.24	15.96	13.48	6.64	10.4	3.54	1.51	1.51	1.88
Merged-chr19-16050370-2	chr19	16050270	16050470	+	858.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65295.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	10.9	14.09	6.85	5.63	5.73	2.51	6.31	3.11	20.26	19.08	17.59	11.59
Merged-chrX-86951134-3	chrX	86951025	86951225	+	858.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160403, intron 6 of 10)	intron (NM_001160403, intron 6 of 10)	-596131.0	NR_036689	245502.0	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	6.06	7.29	17.68	9.65	16.36	11.29	5.98	15.62	16.33	7.53	33.16	11.9
Merged-chr4-58909937-3	chr4	58909830	58910030	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355697, intron 1 of 49)	L1MB3|LINE|L1	2000.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	12.92	13.33	15.4	15.69	14.32	9.41	4.32	8.97	13.18	4.52	9.04	8.77
Merged-chr1-186722079-3	chr1	186721977	186722177	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026041, intron 4 of 4)	intron (NM_026041, intron 4 of 4)	-16088.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	11.31	21.63	19.97	14.88	12.27	18.5	11.29	15.87	9.83	8.54	13.57	8.46
Merged-chr18-35119730-3	chr18	35119638	35119838	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009818, intron 1 of 17)	intron (NM_009818, intron 1 of 17)	826.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	18.57	12.07	12.55	17.29	5.32	11.6	5.31	16.57	14.95	11.05	20.1	14.1
Merged-chr3-15194570-3	chr3	15194471	15194671	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137731.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	15.75	13.58	13.69	15.28	12.27	11.6	9.97	22.88	20.26	11.55	50.25	11.28
Merged-chr1-106151962-3	chr1	106151853	106152053	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040630)	TTS (NR_040630)	19571.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	12.11	9.56	18.25	7.64	15.14	12.86	11.63	14.07	15.93	16.07	19.6	11.28
Merged-chr18-61384317-3	chr18	61384222	61384422	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	13578.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	8.48	16.35	31.95	6.03	9.0	12.54	11.29	12.08	24.98	24.6	23.62	12.22
Merged-chr8-13666101-2	chr8	13665991	13666191	+	858.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	11496.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.42	2.01	16.54	12.87	23.32	9.09	13.62	30.87	6.29	6.03	18.09	5.01
Merged-chr17-45558095-3	chr17	45558000	45558200	+	858.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	2400.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	24.23	41.0	23.96	12.07	22.5	58.01	9.63	7.26	42.48	39.16	17.59	9.4
Merged-chr18-24470850-3	chr18	24470771	24470971	+	858.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026529)	promoter-TSS (NM_026529)	0.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	14.54	4.78	8.56	10.86	10.64	16.31	14.62	9.11	11.41	12.05	16.08	12.53
Merged-chr10-93365475-3	chr10	93365380	93365580	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29269.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	33.52	45.53	59.9	80.84	59.73	48.92	43.18	78.53	10.23	5.02	6.03	6.58
Merged-chr16-33906392-1	chr16	33906292	33906492	+	858.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 8 of 14)	intron (NM_001145884, intron 8 of 14)	60646.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	1.21	2.26	8.56	6.03	6.95	3.76	7.97	21.5	5.9	3.01	8.04	4.07
Merged-chr2-129381270-3	chr2	129381157	129381357	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10118.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	11.31	7.04	21.11	12.87	7.36	6.9	5.65	8.64	23.8	17.07	15.58	11.28
Merged-chr5-64297268-3	chr5	64297164	64297364	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	L1MB2|LINE|L1	66907.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.04	13.08	21.11	12.47	13.91	13.17	8.97	16.43	14.16	9.04	19.6	10.96
Merged-chr4-137374324-3	chr4	137374225	137374425	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-16566.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	10.09	12.83	16.54	13.27	4.91	13.48	8.97	7.79	22.42	5.02	10.05	13.47
Merged-chr2-30214993-3	chr2	30214889	30215089	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9142.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	22.61	28.93	26.24	13.27	24.55	50.17	13.95	5.41	11.21	8.54	7.03	2.82
Merged-chr4-95867283-1	chr4	95867183	95867383	+	858.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	MIRb|SINE|MIR	99752.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.63	6.04	3.99	10.46	14.73	8.47	8.64	11.27	7.67	7.53	11.56	14.1
Merged-chr11-96875787-3	chr11	96875675	96875875	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25382.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	10.09	6.54	2.85	4.42	27.0	19.13	15.28	17.92	36.19	26.11	36.18	22.87
Merged-chr3-109357866-3	chr3	109357769	109357969	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	17186.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	8.48	9.81	9.7	5.63	22.5	13.48	12.95	10.43	12.98	19.08	17.08	9.71
Merged-chr7-45705907-5	chr7	45705803	45706003	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016974, intron 1 of 3)	intron (NM_016974, intron 1 of 3)	656.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	9.69	11.32	2.28	9.25	5.32	4.08	3.99	8.97	7.67	7.03	5.53	10.65
Merged-chr9-124027533-3	chr9	124027414	124027614	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	5543.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	11.71	6.04	16.54	5.63	11.05	14.42	12.29	9.95	5.9	3.01	12.06	3.45
Merged-chr17-67246717-2	chr17	67246670	67246870	+	858.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	107689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.02	6.29	0.0	4.42	3.27	5.02	1.99	10.88	9.83	9.54	17.08	7.52
Merged-chr2-35475089-3	chr2	35474969	35475169	+	858.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13620.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	24.23	11.57	38.22	40.22	8.59	9.41	5.31	18.93	12.0	16.57	12.06	15.66
Merged-chr4-10977166-2	chr4	10977078	10977278	+	858.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30441.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.63	5.28	7.99	10.46	9.0	3.14	8.3	9.5	13.57	15.06	22.61	12.84
Merged-chr4-40776630-2	chr4	40776534	40776734	+	858.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18749.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	6.46	5.53	7.99	6.03	22.09	13.48	3.32	10.23	12.19	10.54	20.1	8.14
Merged-chr6-43640763-3	chr6	43640620	43640820	+	858.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	25558.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	13.73	7.8	5.7	10.05	12.68	16.62	14.62	19.93	14.55	11.55	12.06	5.64
Merged-chr4-12241115-3	chr4	12241012	12241212	+	858.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69097.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	18.17	20.37	19.4	9.65	25.36	20.7	5.65	23.66	21.83	16.07	20.1	9.4
Merged-chr1-105169899-3	chr1	105169793	105169993	+	858.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186114.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	5.65	12.07	9.13	6.44	6.55	18.19	13.95	9.67	19.08	20.08	25.63	4.7
Merged-chr13-91223172-3	chr13	91223069	91223269	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	818.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	9.29	8.8	14.83	11.26	11.05	4.39	12.62	13.09	17.51	8.03	19.6	6.89
Merged-chr3-95972390-3	chr3	95972289	95972489	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13121.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	14.13	6.04	13.12	16.09	15.14	18.5	13.95	18.36	13.37	14.06	18.59	10.96
Merged-chr6-17612835-3	chr6	17612713	17612913	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24197.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	13.33	9.81	13.69	6.84	16.77	8.78	10.96	15.2	21.24	25.11	14.07	13.47
Merged-chr15-98631665-3	chr15	98631554	98631754	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-674.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	11.71	15.85	13.69	10.05	21.27	20.7	8.3	11.1	9.83	23.6	26.63	12.22
Merged-chr8-125513596-3	chr8	125513509	125513709	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-20776.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	9.69	6.29	13.12	12.47	8.59	8.15	9.97	15.95	14.36	11.55	7.54	12.53
Merged-chr3-18625700-1	chr3	18625600	18625800	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145223.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	1.21	1.76	1.14	2.41	10.23	9.41	8.64	8.58	7.28	11.05	11.56	14.1
Merged-chr16-78205022-2	chr16	78204933	78205133	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50421.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.65	7.29	2.28	3.22	4.91	19.76	3.99	8.36	19.47	9.54	13.06	11.9
Merged-chr2-113447501-2	chr2	113447405	113447605	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	6441.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	12.92	11.32	13.12	19.31	11.86	5.64	13.62	24.36	4.13	2.51	7.03	5.95
Merged-chr9-15880356-1	chr9	15880256	15880456	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5800.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	1.62	5.03	3.42	3.22	2.45	11.29	4.65	11.5	5.11	4.02	6.53	6.27
Merged-chr17-6961782-3	chr17	6961686	6961886	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147155)	promoter-TSS (NM_147155)	-630.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	20.59	16.1	26.24	19.71	13.5	41.08	10.96	9.45	8.46	22.09	9.04	10.34
Merged-chr12-86949727-1	chr12	86949627	86949827	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	2384.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.81	7.29	3.42	2.01	13.5	3.14	5.65	10.96	7.08	1.51	9.04	2.51
Merged-chr6-122601028-3	chr6	122600999	122601199	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 1 of 7)	RLTR19-int|LTR|ERVK	1345.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	5.65	9.56	11.98	10.05	6.55	16.93	2.99	8.21	18.49	25.11	19.09	31.33
Merged-chrX-121497903-3	chrX	121497807	121498007	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	899478.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	18.57	25.91	33.66	35.39	63.0	77.45	53.48	88.15	10.42	7.53	12.06	10.02
Merged-chr8-111596005-3	chr8	111595900	111596100	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	34322.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	10.9	15.09	18.25	35.39	18.0	13.8	18.27	28.85	10.42	12.05	10.55	7.21
Merged-chr17-71196866-1	chr17	71196766	71196966	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-7788.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.23	2.01	2.28	3.22	11.45	8.78	1.99	7.46	7.67	2.51	7.03	5.33
Merged-chr1-162478003-3	chr1	162477904	162478104	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172646)	promoter-TSS (NM_172646)	30.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	11.31	7.55	17.11	15.69	12.27	11.29	25.58	26.94	10.62	11.05	24.12	13.47
Merged-chr16-44793885-1	chr16	44793785	44793985	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 6 of 6)	intron (NM_021325, intron 6 of 6)	-26843.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	3.23	0.5	7.99	4.83	6.55	7.53	7.64	14.3	4.52	3.01	2.01	3.45
Merged-chr16-21499256-2	chr16	21499112	21499312	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 21 of 46)	intron (NM_001081366, intron 21 of 46)	76094.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.4	4.28	0.57	10.86	7.77	9.09	8.3	12.93	6.29	2.01	8.04	3.13
Merged-chr6-5401567-2	chr6	5401448	5401648	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355662, intron 2 of 4)	Lx8|LINE|L1	11138.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	8.08	4.28	6.85	5.63	10.64	6.27	6.98	10.85	12.0	4.02	12.56	5.01
Merged-chr1-173940538-2	chr1	173940424	173940624	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302649, intron 2 of 9)	Lx8b|LINE|L1	1968.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	8.48	4.02	13.12	19.71	27.0	30.73	28.9	54.59	3.54	4.02	2.01	3.13
Merged-chr2-4492711-3	chr2	4492622	4492822	+	858.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-67032.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	9.29	9.06	15.4	8.04	13.91	9.41	9.97	9.62	13.96	9.04	21.1	13.47
Merged-chr13-34250868-3	chr13	34250777	34250977	+	858.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87913.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	13.33	6.54	18.25	17.7	11.05	13.8	14.95	22.43	20.06	12.05	21.1	15.66
Merged-chr14-70520518-3	chr14	70520424	70520624	+	858.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009755)	promoter-TSS (NM_009755)	148.0	NM_001360021	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	14.94	14.34	12.55	12.47	27.82	16.62	13.29	14.27	20.46	12.05	12.56	19.11
Merged-chr17-62642672-3	chr17	62642565	62642765	+	858.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	238652.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	6.06	7.55	11.98	12.07	11.86	16.93	19.27	38.24	10.23	12.05	24.62	15.04
Merged-chrX-75514617-3	chrX	75514512	75514712	+	858.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011692, intron 1 of 5)	intron (NM_011692, intron 1 of 5)	315.0	NM_011692	22327.0	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	10.09	11.57	10.84	13.27	16.77	21.64	7.97	9.84	14.36	9.54	19.09	12.22
Merged-chr15-27469380-3	chr15	27469264	27469464	+	858.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	2687.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	12.11	11.82	15.97	18.1	17.59	17.56	28.9	38.44	12.98	11.05	12.56	12.84
Merged-chr6-90728845-3	chr6	90728767	90728967	+	858.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-12338.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	9.69	8.05	12.55	7.24	13.5	17.87	4.98	9.95	17.51	19.58	18.59	16.6
Merged-chr16-92423612-2	chr16	92423493	92423693	+	858.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-23515.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.83	5.79	2.28	10.86	7.77	10.98	6.31	12.42	12.59	8.03	18.09	6.27
Merged-chr7-4865186-1	chr7	4865086	4865286	+	858.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026158, intron 1 of 5)	B2_Mm2|SINE|B2	993.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	1.21	3.27	5.7	5.63	1.64	1.25	1.0	5.02	20.26	10.54	25.63	15.35
Merged-chr12-76948925-3	chr12	76948835	76949035	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	13313.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	8.88	8.05	6.85	13.67	13.09	12.86	16.94	17.66	21.83	10.04	11.05	15.04
Merged-chr10-94480682-1	chr10	94480582	94480782	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-34175.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.86	2.01	5.7	4.02	10.23	7.84	6.64	9.7	4.13	2.51	8.04	0.31
Merged-chr9-65577808-3	chr9	65577720	65577920	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	B3|SINE|B2	2267.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.85	2.77	4.56	4.42	1.23	4.08	4.65	3.31	15.34	17.07	9.04	11.59
Merged-chr7-118175689-1	chr7	118175589	118175789	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031814, intron 29 of 62)	L1ME1|LINE|L1	-46064.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	3.23	6.29	7.42	11.66	7.36	6.27	10.3	10.26	2.36	4.02	3.52	6.89
Merged-chrX-20688898-3	chrX	20688796	20688996	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011049, intron 1 of 15)	intron (NM_011049, intron 1 of 15)	470.0	NM_011049	18555.0	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	12.11	11.82	5.7	14.48	8.18	12.54	12.95	8.61	19.47	15.06	19.6	10.96
Merged-chr13-81402551-1	chr13	81402451	81402651	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 77 of 89)	L1MDa|LINE|L1	230593.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	6.46	5.03	6.28	6.44	7.77	3.76	7.97	14.33	6.49	4.02	3.01	8.14
Merged-chr12-85543022-3	chr12	85542962	85543162	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56043.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.06	8.05	7.99	5.63	5.32	9.41	2.66	13.74	20.46	5.02	19.6	9.4
Merged-chr3-81126883-3	chr3	81126774	81126974	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90458.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	10.09	9.56	10.84	14.88	16.77	10.98	18.93	31.93	15.34	16.57	22.61	9.4
Merged-chr11-69850156-1	chr11	69850056	69850256	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_031880)	TTS (NM_031880)	3512.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.0	2.52	3.42	0.4	11.45	15.05	7.97	9.03	4.92	5.52	2.01	4.39
Merged-chr13-34653582-3	chr13	34653486	34653686	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025831)	promoter-TSS (NM_025831)	663.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	9.29	6.54	11.41	10.86	20.05	22.26	8.64	13.37	13.77	12.55	23.11	8.14
Merged-chr15-62450337-3	chr15	62450219	62450419	+	858.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230868.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	7.67	10.56	11.98	7.24	3.68	13.48	4.65	10.43	15.14	5.02	14.07	11.59
Merged-chr3-89285456-3	chr3	89285349	89285549	+	858.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4498.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	5.65	9.56	14.83	6.44	16.36	8.47	5.31	12.11	12.19	4.02	6.53	8.46
Merged-chr5-86792946-1	chr5	86792846	86793046	+	858.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-11320.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	2.02	3.02	1.14	7.24	7.36	11.29	6.64	8.78	5.11	4.02	8.04	1.88
Merged-chr11-32586131-1	chr11	32586031	32586231	+	858.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52865.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.46	4.28	4.56	4.83	15.96	10.98	7.31	18.08	4.52	4.52	3.01	5.95
Merged-chr14-22913107-3	chr14	22912993	22913193	+	858.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	181478.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	7.27	7.55	25.1	7.64	13.91	26.97	25.58	21.5	28.32	20.08	18.09	11.9
Merged-chr11-70804877-3	chr11	70804783	70804983	+	858.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7678.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	7.67	2.77	17.68	9.25	4.91	8.78	18.27	10.15	15.54	6.03	17.59	12.84
Merged-chr13-37486466-2	chr13	37486349	37486549	+	858.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	141104.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	9.69	7.8	29.66	24.13	13.91	9.09	15.61	24.73	0.0	0.5	0.0	0.94
Merged-chr15-63613300-3	chr15	63613202	63613402	+	858.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133694.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	11.31	12.83	23.96	10.05	8.59	11.29	14.62	15.56	13.18	12.55	19.09	3.76
Merged-chr4-63368799-3	chr4	63368711	63368911	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 21 of 21)	intron (NM_001045514, intron 21 of 21)	6362.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	5.25	9.06	4.56	8.04	11.86	18.81	9.3	12.56	24.59	18.08	26.13	5.64
Merged-chr4-62780636-3	chr4	62780537	62780737	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106663.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	15.75	18.86	8.56	10.46	11.45	11.29	14.62	18.03	12.59	6.03	10.55	9.71
Merged-chr2-102974244-3	chr2	102974125	102974325	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72560.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	17.77	11.57	11.41	10.46	17.18	7.53	15.28	20.83	16.92	16.57	14.07	12.22
Merged-chr17-53584107-3	chr17	53584010	53584210	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190846)	promoter-TSS (NM_001190846)	-16.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	8.08	9.56	17.11	8.85	22.09	15.68	15.61	24.48	24.78	12.55	28.14	13.16
Merged-chr8-106972016-3	chr8	106971908	106972108	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	36258.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	11.71	7.55	2.28	2.41	12.68	13.48	13.29	10.68	16.52	35.65	18.59	10.65
Merged-chr1-128633883-1	chr1	128633783	128633983	+	858.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41584.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.83	0.0	0.0	0.0	0.0	0.0	0.66	0.9	20.85	14.56	13.06	8.77
Merged-chr6-108721780-2	chr6	108721675	108721875	+	858.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60841.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	9.69	11.32	22.25	27.75	6.95	7.21	9.97	23.97	1.97	5.02	3.01	4.07
Merged-chr6-121224080-3	chr6	121223978	121224178	+	858.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13344.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	22.61	11.57	10.84	12.87	19.23	8.47	15.94	13.82	23.01	19.58	25.63	7.83
Merged-chr3-58691452-3	chr3	58691367	58691567	+	858.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009174, exon 1 of 2)	exon (NM_009174, exon 1 of 2)	921.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	14.94	10.06	9.13	11.66	8.59	14.42	18.6	17.47	11.8	14.06	21.61	18.8
Merged-chr9-25289371-3	chr9	25289277	25289477	+	858.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359738, intron 5 of 12)	intron (NM_001359738, intron 5 of 12)	36485.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	16.96	4.28	17.68	14.48	9.41	12.54	7.64	16.63	14.36	10.54	18.59	9.71
Merged-chr5-72812476-3	chr5	72812382	72812582	+	858.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55966.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	16.96	14.59	6.85	11.66	17.18	17.25	7.31	21.45	31.27	23.1	17.59	7.52
Merged-chr10-75222104-2	chr10	75222011	75222211	+	858.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001145826, exon 2 of 19)	5' UTR (NM_001145826, exon 2 of 19)	9721.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	5.25	5.28	5.13	5.63	12.68	11.6	7.97	8.55	17.7	18.58	17.59	10.65
Merged-chr10-24636152-3	chr10	24636044	24636244	+	858.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40702.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	12.52	11.07	7.42	6.44	25.36	18.19	11.96	20.61	25.77	19.08	19.6	8.14
Merged-chr3-59175444-3	chr3	59175346	59175546	+	858.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	19658.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	7.27	12.83	9.13	14.48	9.41	8.78	9.97	15.73	29.9	17.57	31.15	7.83
Merged-chr12-25393946-3	chr12	25393862	25394062	+	858.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	264788.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.25	6.29	15.4	14.08	21.68	10.66	19.93	16.96	15.74	4.02	20.6	10.65
Merged-chr4-109333334-1	chr4	109333234	109333434	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-9722.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	1.62	1.01	0.0	1.61	3.27	4.08	6.31	8.44	0.79	0.5	1.0	1.57
Merged-chr10-53428941-1	chr10	53428841	53429041	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19059.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.5	1.14	2.41	3.27	2.51	7.64	6.67	3.54	4.02	5.53	4.07
Merged-chr8-104535515-1	chr8	104535415	104535615	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	815.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	2.83	4.02	5.13	5.23	4.5	6.9	2.33	5.69	5.11	4.52	9.04	3.45
Merged-chr10-93095399-3	chr10	93095296	93095496	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13800.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.85	7.29	7.99	10.05	26.18	34.18	15.61	15.45	94.8	128.54	128.13	72.99
Merged-chr8-56548068-1	chr8	56547968	56548168	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009951, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	2498.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	6.06	5.03	9.13	0.8	7.77	7.53	1.66	8.02	3.34	5.02	13.57	9.4
Merged-chr4-32545779-1	chr4	32545679	32545879	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	25883.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.23	3.02	6.85	7.24	6.14	11.29	8.3	15.0	9.24	2.51	5.53	7.52
Merged-chr5-113624510-1	chr5	113624410	113624610	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	19093.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.02	1.76	5.13	5.63	9.82	7.53	3.99	6.7	3.74	7.03	8.04	3.45
Merged-chr2-59229271-1	chr2	59229171	59229371	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	68421.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.63	0.5	4.56	4.83	5.32	0.94	5.98	9.67	9.24	3.51	1.51	4.39
Merged-chr13-34064111-3	chr13	34064020	34064220	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 6 of 6)	intron (NM_026512, intron 6 of 6)	13888.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	14.54	11.32	15.4	15.28	15.96	11.6	9.97	13.01	12.59	13.56	7.54	8.14
Merged-chr13-97203288-1	chr13	97203188	97203388	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4931.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	8.88	5.53	3.99	5.63	2.45	7.84	2.33	7.29	6.69	1.0	2.01	3.76
Merged-chr14-47360631-1	chr14	47360531	47360731	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13229.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.83	2.52	3.99	3.22	6.55	6.9	11.29	12.81	2.75	6.03	5.53	4.39
Merged-chr1-45923470-1	chr1	45923370	45923570	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 2 of 7)	intron (NM_016917, intron 2 of 7)	2124.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.81	1.26	0.57	4.42	5.73	1.88	7.97	7.65	2.36	3.01	11.05	3.45
Merged-chr6-114892280-4	chr6	114892166	114892366	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	29555.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.27	7.04	7.42	7.64	13.5	22.89	11.29	19.07	6.1	8.03	9.55	11.59
Merged-chr1-93013631-1	chr1	93013531	93013731	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7297.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.81	2.01	4.56	6.03	6.55	3.76	6.64	8.24	4.92	5.52	8.54	5.95
Merged-chr16-5444958-3	chr16	5444865	5445065	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-189009.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	18.98	13.08	32.52	27.35	34.36	27.28	14.28	29.8	14.36	12.05	6.53	7.21
Merged-chr11-55458776-1	chr11	55458676	55458876	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2432.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	2.42	4.02	5.7	3.22	8.59	9.09	3.32	6.73	6.49	11.05	3.01	4.07
Merged-chr13-69660879-1	chr13	69660779	69660979	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48863.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	1.62	2.77	1.14	1.61	3.27	1.57	10.3	7.32	1.18	0.0	0.0	0.94
Merged-chr6-38299078-1	chr6	38298978	38299178	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172467, exon 1 of 4)	exon (NM_172467, exon 1 of 4)	181.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	2.83	6.79	6.28	3.22	4.09	7.21	1.33	3.59	3.15	5.52	2.51	3.45
Merged-chr10-34047964-1	chr10	34047864	34048064	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162937, intron 1 of 6)	intron (NM_001162937, intron 1 of 6)	-3651.0	NM_001081165	270711.0	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Calhm4|Gm643	family with sequence similarity 26, member D	protein-coding	5.65	4.28	2.28	6.44	1.64	0.63	5.65	6.17	5.11	4.02	4.02	3.45
Merged-chr11-30267666-1	chr11	30267566	30267766	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-47894.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.04	7.04	3.99	4.83	6.95	8.47	16.28	7.54	4.52	7.53	5.02	4.07
Merged-chr2-91456051-2	chr2	91455962	91456162	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1469.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	8.08	13.33	3.42	4.42	16.36	18.19	4.32	8.02	19.67	9.54	4.52	8.77
Merged-chr14-11162066-3	chr14	11161947	11162147	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308285)	promoter-TSS (NM_001308285)	-12.0	NM_001308285	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.06	10.82	6.85	7.64	31.5	27.28	37.54	67.12	14.75	12.55	18.59	10.65
Merged-chr19-47511057-1	chr19	47510957	47511157	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-1925.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	1.62	1.76	2.28	4.83	7.77	2.2	6.98	9.62	7.08	5.52	2.51	1.25
Merged-chr9-61367829-1	chr9	61367729	61367929	+	858.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4537.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	13.33	7.29	3.99	1.61	3.27	26.34	4.65	2.47	11.41	11.55	6.53	6.27
Merged-chr8-106612282-1	chr8	106612182	106612382	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009864, intron 2 of 15)	ID2|SINE|ID	8932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	2.42	3.77	10.27	4.83	11.86	4.39	10.3	8.64	6.69	5.52	5.02	4.7
Merged-chr2-60818311-1	chr2	60818211	60818411	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63127.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.42	3.02	1.14	2.41	3.68	4.39	5.65	6.34	8.65	3.01	2.51	5.64
Merged-chr2-169087468-1	chr2	169087368	169087568	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109199.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.63	3.02	4.56	14.48	4.5	3.45	6.64	17.33	4.52	8.54	2.51	2.51
Merged-chr5-122142440-1	chr5	122142340	122142540	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	4.85	7.55	3.99	1.61	2.86	10.66	6.98	1.99	6.1	5.52	1.51	4.39
Merged-chr11-73224157-1	chr11	73224057	73224257	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029031, exon 7 of 7)	3' UTR (NM_029031, exon 7 of 7)	-9992.0	NM_001001445	193034.0	Mm.447485	NM_001001445	ENSMUSG00000005952	Trpv1	OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1	transient receptor potential cation channel, subfamily V, member 1	protein-coding	5.65	6.54	9.13	6.84	7.77	9.09	1.99	10.99	8.26	4.52	9.55	4.07
Merged-chr4-126227193-2	chr4	126227089	126227289	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24479.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	14.13	5.53	11.98	8.85	18.0	15.99	9.3	10.18	11.21	16.07	17.08	7.21
Merged-chr4-16120834-3	chr4	16120750	16120950	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42793.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.86	8.05	4.56	8.85	12.27	14.74	12.29	20.58	19.08	16.07	5.02	5.01
Merged-chr6-134559755-2	chr6	134559664	134559864	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	7149.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	9.69	19.12	4.56	14.48	12.68	21.95	5.98	16.96	3.34	2.01	2.01	1.88
Merged-chr10-34176361-1	chr10	34176261	34176461	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	31190.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.85	4.53	0.0	8.45	8.59	0.63	6.98	6.79	5.9	6.03	13.06	4.07
Merged-chr2-45028297-3	chr2	45028201	45028401	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	MIRc|SINE|MIR	-5124.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	9.69	14.84	11.98	9.25	13.5	18.81	12.95	9.53	22.82	15.57	12.56	5.33
Merged-chr11-119269227-1	chr11	119269127	119269327	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008064, intron 1 of 19)	MER21C|LTR|ERVL	1264.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.23	2.52	5.7	0.8	4.09	7.53	8.3	8.5	1.77	0.5	2.51	3.45
Merged-chr3-96692781-2	chr3	96692741	96692941	+	857.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3534.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	4.85	2.26	1.71	1.21	8.18	5.02	1.99	6.53	5.7	6.03	8.04	5.01
Merged-chr6-34359221-3	chr6	34359128	34359328	+	857.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008012, intron 4 of 9)	intron (NM_008012, intron 4 of 9)	5082.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	6.06	8.55	6.28	18.9	12.68	18.81	7.31	20.69	16.92	14.56	31.66	19.74
Merged-chr19-45650119-3	chr19	45649999	45650199	+	857.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	B2_Mm2|SINE|B2	10094.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	11.31	16.35	14.83	16.89	27.41	16.93	25.24	24.08	11.8	4.52	14.07	16.92
Merged-chr7-88285513-2	chr7	88285407	88285607	+	857.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7422.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.63	4.02	6.85	6.84	4.5	9.09	12.29	26.44	14.16	14.56	10.55	15.35
Merged-chr2-43561387-3	chr2	43561295	43561495	+	857.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	6070.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	8.48	11.57	14.26	7.24	21.27	7.53	13.62	16.51	15.54	6.53	20.6	9.4
Merged-chr2-28621903-3	chr2	28621814	28622014	+	857.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	68.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	15.75	11.82	14.26	9.65	7.77	12.23	8.3	9.34	17.51	8.03	15.58	15.04
Merged-chr7-127615202-3	chr7	127615077	127615277	+	857.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	95.0	NR_155450	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	8.48	13.08	5.7	18.9	12.27	10.35	12.62	9.48	15.74	15.06	23.62	13.16
Merged-chr5-147918485-3	chr5	147918400	147918600	+	857.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23685.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	10.5	12.58	2.28	5.63	9.82	9.09	1.66	7.96	13.77	14.56	15.07	5.01
Merged-chr13-76597146-3	chr13	76596943	76597143	+	857.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	212082.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	7.27	4.53	2.28	2.01	3.68	0.31	3.32	4.12	4.72	7.53	9.04	4.07
Merged-chr8-24554727-3	chr8	24554663	24554863	+	857.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 2 of 9)	intron (NM_145949, intron 2 of 9)	21570.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	14.94	10.31	6.85	4.02	7.77	16.62	5.98	13.09	11.6	10.54	12.06	13.47
Merged-chr12-73123769-3	chr12	73123691	73123891	+	857.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008612)	promoter-TSS (NM_008612)	74.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	9.29	10.31	8.56	15.28	12.68	9.41	8.97	17.02	8.65	7.03	14.57	11.59
Merged-chr17-24540567-2	chr17	24540470	24540670	+	857.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6823.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.0	0.5	0.0	1.61	27.0	11.6	6.64	6.95	23.21	16.07	17.59	5.95
Merged-chr2-181675645-3	chr2	181675552	181675752	+	857.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4012.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	14.13	12.07	38.22	41.83	16.77	17.56	3.99	11.66	7.87	12.55	13.57	8.14
Merged-chr2-23021790-3	chr2	23021675	23021875	+	857.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	RMER19B|LTR|ERVK	18466.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	9.69	6.79	7.99	8.45	9.82	15.05	28.9	15.59	14.75	15.06	21.61	13.47
Merged-chr19-32225330-1	chr19	32225230	32225430	+	857.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-14317.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.83	3.52	2.85	3.22	8.18	9.09	8.64	12.14	7.47	8.03	4.52	5.95
Merged-chr4-132806988-3	chr4	132806880	132807080	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10616.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	12.92	13.08	15.97	8.85	4.09	5.33	6.31	11.13	21.24	6.03	9.55	16.92
Merged-chr12-99647097-3	chr12	99646997	99647197	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-19123.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	6.46	9.81	13.12	10.46	17.18	7.84	12.62	7.82	39.14	35.65	59.8	26.63
Merged-chr1-74439696-3	chr1	74439601	74439801	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176972, intron 25 of 25)	intron (NM_176972, intron 25 of 25)	30317.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	10.5	6.04	7.42	4.42	16.77	20.07	11.63	17.22	19.87	16.57	20.6	9.71
Merged-chr2-119251046-3	chr2	119250967	119251167	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13707.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	4.85	11.32	13.69	2.01	14.32	11.92	5.31	8.3	3.34	5.52	11.05	7.83
Merged-chr18-68148545-1	chr18	68148445	68148645	+	857.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	L2a|LINE|L2	-79401.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	1.62	3.77	0.0	2.01	9.0	13.48	2.66	3.81	6.1	5.02	3.52	7.21
Merged-chr4-6223245-1	chr4	6223145	6223345	+	857.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32140.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.0	0.5	0.0	0.0	3.27	0.63	0.0	3.5	12.59	9.54	17.08	12.22
Merged-chr5-136084473-2	chr5	136084353	136084553	+	857.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	537.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	4.85	11.57	6.28	3.22	10.64	19.44	12.62	5.1	13.57	12.55	13.57	12.22
Merged-chr1-80635836-2	chr1	80635751	80635951	+	857.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	29501.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.63	4.53	7.99	9.25	8.18	13.8	12.62	17.22	8.85	12.55	4.02	6.27
Merged-chr6-72742569-3	chr6	72742479	72742679	+	857.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	MIR|SINE|MIR	46466.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	8.88	9.06	9.13	10.46	1.23	4.7	14.62	16.91	9.24	17.07	38.19	17.86
Merged-chr13-111494453-2	chr13	111494354	111494554	+	857.7333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-4327.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	2.42	11.32	5.7	5.63	14.73	12.86	4.65	6.81	22.23	22.09	14.57	12.22
Merged-chr15-88734297-3	chr15	88734203	88734403	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033274)	promoter-TSS (NM_001033274)	-84.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	4.04	15.09	13.12	13.27	12.27	14.74	19.27	17.61	13.96	11.05	27.13	11.28
Merged-chr16-93192933-3	chr16	93192804	93193004	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	160285.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	22.21	9.31	22.25	13.27	14.32	8.47	12.62	29.19	11.21	14.56	14.07	10.34
Merged-chr8-64946592-3	chr8	64946480	64946680	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	-605.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	10.09	11.07	7.42	12.47	9.0	9.41	10.63	9.73	8.85	13.05	16.08	11.59
Merged-chr13-70650246-3	chr13	70650094	70650294	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-12560.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	4.04	6.54	5.7	7.24	9.82	3.14	19.27	17.66	13.96	4.52	5.53	8.14
Merged-chr8-117201750-2	chr8	117201633	117201833	+	857.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	43598.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	7.27	7.04	21.11	7.64	14.73	7.84	4.65	8.58	4.52	6.53	9.55	6.27
Merged-chr17-85575193-1	chr17	85575093	85575293	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43203.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	7.27	3.52	1.14	0.8	14.73	7.53	4.32	15.08	6.1	7.03	4.02	3.13
Merged-chr10-9907657-1	chr10	9907557	9907757	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6617.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.65	4.28	7.42	11.26	10.23	8.15	6.98	14.41	7.47	9.54	9.04	3.76
Merged-chr7-125503601-3	chr7	125503507	125503707	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12065.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	11.71	13.58	10.84	12.87	8.59	7.84	10.3	9.28	18.69	19.08	26.63	13.47
Merged-chr6-136728411-3	chr6	136728309	136728509	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127318, intron 13 of 26)	intron (NM_001127318, intron 13 of 26)	53333.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	28.67	26.66	22.25	20.91	30.27	24.15	14.95	29.78	9.44	7.53	10.05	11.28
Merged-chr8-120766804-1	chr8	120766704	120766904	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28165.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	10.9	4.28	3.42	8.04	1.64	8.47	9.63	10.77	6.49	4.02	9.55	2.19
Merged-chr11-120949017-3	chr11	120948926	120949126	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038654)	promoter-TSS (NM_001038654)	-41.0	NM_001038653	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	11.31	14.84	7.99	6.44	13.5	11.29	6.31	10.49	7.28	7.03	13.06	6.89
Merged-chr10-8743054-2	chr10	8742956	8743156	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 12 of 19)	intron (NM_175155, intron 12 of 19)	143014.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.46	7.29	7.42	5.63	3.27	18.5	5.65	14.22	6.88	23.6	16.58	9.71
Merged-chr4-135618205-1	chr4	135618105	135618305	+	857.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8450.0	NR_015613	73937.0	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	6.06	2.52	4.56	0.8	0.41	3.76	2.66	4.04	12.59	21.59	26.63	9.08
Merged-chr12-32209120-3	chr12	32209022	32209222	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-473.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	8.08	11.32	9.7	7.24	13.09	17.56	7.31	13.21	13.18	15.06	8.04	8.46
Merged-chr14-46767531-3	chr14	46767434	46767634	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360041, intron 5 of 7)	intron (NM_001360041, intron 5 of 7)	6993.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	29.07	30.43	44.5	69.98	40.5	32.3	39.2	68.38	6.88	3.51	12.06	7.21
Merged-chr3-122629765-2	chr3	122629673	122629873	+	857.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10059.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	2.83	2.52	0.0	0.4	9.41	1.57	1.66	4.65	14.95	15.06	18.59	13.78
Merged-chr11-119022928-3	chr11	119022815	119023015	+	857.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007623)	promoter-TSS (NM_007623)	-106.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	15.75	11.32	7.99	14.88	24.55	20.38	7.31	12.36	20.85	12.05	22.61	7.83
Merged-chr1-170996958-3	chr1	170996852	170997052	+	857.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20881.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	11.71	6.79	5.7	6.44	17.18	12.23	7.31	11.61	19.08	25.61	20.1	19.74
Merged-chr19-11517571-3	chr19	11517466	11517666	+	857.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-993.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	16.96	8.05	31.95	19.31	27.41	10.03	26.91	18.76	13.77	16.07	13.57	5.64
Merged-chr8-25694849-3	chr8	25694761	25694961	+	857.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081269, intron 15 of 22)	intron (NM_001081269, intron 15 of 22)	-25187.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	20.59	11.07	21.11	24.53	18.0	18.81	30.56	37.6	9.24	11.05	10.55	4.39
Merged-chr19-60611959-3	chr19	60611843	60612043	+	857.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30920.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.25	6.79	6.85	10.46	18.82	19.44	11.63	16.51	20.26	13.56	26.63	6.58
Merged-chr16-57347889-2	chr16	57347787	57347987	+	857.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-5390.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.88	5.28	7.42	2.01	9.82	5.96	5.65	10.04	20.26	16.57	16.58	6.58
Merged-chr12-3264584-2	chr12	3264470	3264670	+	857.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 2 of 5)	intron (NM_016676, intron 2 of 5)	28779.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	9.69	4.02	19.97	7.24	21.68	21.64	9.97	18.17	17.9	13.56	12.56	10.02
Merged-chr10-117755465-4	chr10	117755318	117755518	+	857.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134010, intron 26 of 27)	intron (NM_134010, intron 26 of 27)	-9060.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	7.67	9.31	7.99	10.86	5.73	6.27	6.64	3.59	8.46	15.06	9.55	11.28
Merged-chr1-60173305-3	chr1	60173209	60173409	+	857.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7290.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	14.54	10.82	7.99	3.22	10.23	15.68	8.97	13.88	19.47	21.59	12.56	12.84
Merged-chr11-29514503-3	chr11	29514395	29514595	+	857.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163454, exon 2 of 3)	exon (NM_001163454, exon 2 of 3)	538.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	29.88	13.83	16.54	20.91	17.59	8.47	8.97	15.7	7.87	9.04	16.58	12.84
Merged-chr7-29229306-3	chr7	29229233	29229433	+	857.555542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	3189.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	6.86	7.8	1.14	2.41	9.82	9.41	4.98	8.5	11.41	7.03	8.04	5.33
Merged-chr10-95563634-3	chr10	95563493	95563693	+	857.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358996, intron 1 of 4)	CpG	553.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	3.23	9.06	8.56	7.64	4.91	13.17	11.96	6.0	9.83	9.04	11.05	7.52
Merged-chr13-22006088-2	chr13	22005978	22006178	+	857.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019429, exon 8 of 12)	exon (NM_019429, exon 8 of 12)	3663.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	12.52	13.33	6.85	13.67	7.77	6.59	9.63	12.62	9.24	3.51	6.53	4.39
Merged-chr18-49552963-2	chr18	49552869	49553069	+	857.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29680.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.04	2.52	5.7	6.84	11.45	17.25	15.61	19.51	13.18	11.05	22.11	10.34
Merged-chr14-67934209-3	chr14	67934118	67934318	+	857.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-646.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	9.69	10.31	16.54	15.28	8.18	9.72	9.3	11.66	17.11	15.57	17.08	5.33
Merged-chr14-73325037-7	chr14	73324957	73325157	+	857.5095210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 1 of 26)	intron (NM_009029, intron 1 of 26)	765.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	4.44	5.03	14.26	10.05	14.73	6.27	6.31	6.14	9.05	3.01	8.54	3.45
Merged-chr11-96896054-2	chr11	96895949	96896149	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20465.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	17.77	4.02	13.69	12.47	2.86	1.25	0.0	2.78	19.67	24.6	22.61	16.6
Merged-chr6-16857252-1	chr6	16857152	16857352	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41189.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.85	2.01	3.42	7.64	6.55	16.31	7.31	10.46	3.93	11.55	0.0	1.25
Merged-chr11-121803074-1	chr11	121802974	121803174	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27144.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.04	2.01	2.28	2.41	2.45	7.53	7.97	10.74	7.08	7.03	10.05	0.94
Merged-chr1-140268486-1	chr1	140268386	140268586	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22229.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.81	2.52	7.42	8.04	5.73	3.76	10.3	11.75	6.1	8.03	5.53	3.13
Merged-chr6-108528176-3	chr6	108528084	108528284	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	38441.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	6.86	5.03	12.55	9.25	19.64	38.57	25.58	48.84	21.05	14.56	28.64	14.1
Merged-chr6-85410875-2	chr6	85410789	85410989	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12997.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	8.08	8.8	14.83	5.63	13.09	2.51	2.66	8.1	8.46	10.54	9.55	10.96
Merged-chr8-95320397-1	chr8	95320297	95320497	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199455, intron 4 of 7)	intron (NM_199455, intron 4 of 7)	8799.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	5.25	3.02	2.28	2.82	9.41	10.98	4.32	7.07	2.36	2.51	6.53	3.76
Merged-chr1-185196519-3	chr1	185196436	185196636	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7632.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	11.71	5.28	17.11	15.69	22.91	20.07	11.29	21.81	8.26	16.07	14.57	10.96
Merged-chr11-44399893-3	chr11	44399788	44399988	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-175.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	13.73	8.55	19.97	10.46	13.91	33.24	13.95	8.86	12.98	19.58	14.07	1.88
Merged-chr5-5184358-3	chr5	5184232	5184432	+	857.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 5 of 14)	L1M4a1|LINE|L1	81736.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	9.69	8.55	17.11	22.93	15.96	12.54	18.6	32.38	12.59	12.55	13.06	15.98
Merged-chr9-58578876-3	chr9	58578774	58578974	+	857.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3366.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	13.33	13.58	18.25	17.7	8.18	13.48	1.99	9.93	14.55	15.57	22.61	7.52
Merged-chr13-95973573-3	chr13	95973476	95973676	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 12 of 12)	intron (NM_029210, intron 12 of 12)	-81654.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.67	5.79	5.13	13.67	14.32	13.17	4.98	13.4	13.18	8.03	13.57	15.35
Merged-chr2-26534806-3	chr2	26534695	26534895	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30868.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	5.65	13.08	13.12	11.66	15.55	13.48	22.59	18.81	21.05	9.54	14.07	10.02
Merged-chrX-150626421-3	chrX	150626321	150626521	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008824, intron 8 of 13)	MIRc|SINE|MIR	31015.0	NM_019548	56191.0	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	14.13	7.29	10.27	16.09	12.68	13.17	11.29	27.22	15.93	12.05	22.11	14.1
Merged-chr3-96576389-3	chr3	96576292	96576492	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9591.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	14.94	10.31	12.55	10.86	17.18	35.43	5.31	6.14	17.7	25.11	22.61	11.59
Merged-chr12-102431713-3	chr12	102431606	102431806	+	857.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	L1Md_F2|LINE|L1	8107.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	16.96	8.55	14.26	8.85	20.05	15.68	15.94	6.62	37.37	30.63	14.07	8.77
Merged-chr11-117712315-2	chr11	117712219	117712419	+	857.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	58030.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.44	4.28	3.42	8.04	15.14	10.35	9.3	9.36	13.96	10.54	13.06	9.71
Merged-chr12-108795292-2	chr12	108795153	108795353	+	857.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	1942.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	10.09	3.52	3.42	4.42	13.09	7.53	3.65	7.49	10.82	6.53	11.05	9.08
Merged-chr19-60608956-3	chr19	60608877	60609077	+	857.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-27954.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.06	9.06	14.83	10.05	20.86	14.74	10.3	22.12	16.13	21.09	26.63	9.4
Merged-chr3-60508192-3	chr3	60508077	60508277	+	857.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	MIR|SINE|MIR	6998.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.44	9.31	11.41	11.26	15.14	19.76	17.61	21.7	15.93	23.1	19.09	20.68
Merged-chr2-126490825-3	chr2	126490736	126490936	+	857.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	717.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	2.83	11.32	9.13	20.91	12.27	20.38	13.95	19.79	12.39	14.06	14.57	14.72
Merged-chr4-142077593-3	chr4	142077475	142077675	+	857.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6723.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.67	9.81	12.55	4.42	10.23	17.25	7.97	8.5	18.69	12.05	14.57	3.76
Merged-chr3-88443060-3	chr3	88442958	88443158	+	857.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013658, intron 10 of 14)	intron (NM_013658, intron 10 of 14)	-2107.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	10.09	7.8	13.12	16.89	21.68	27.28	13.62	11.52	23.41	18.58	22.11	16.29
Merged-chr5-111228443-1	chr5	111228343	111228543	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 8 of 22)	intron (NM_001267622, intron 8 of 22)	-102254.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	9.29	5.28	3.42	6.84	7.36	3.76	10.63	13.4	2.36	2.01	2.51	0.31
Merged-chr6-29530282-3	chr6	29530172	29530372	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252382, intron 1 of 8)	RLTR11A2|LTR|ERVK	990.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	10.09	7.04	6.85	8.85	9.41	9.72	8.3	11.86	13.37	8.03	15.58	12.53
Merged-chr13-23574889-3	chr13	23574784	23574984	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	503.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	10.5	14.59	15.97	17.29	14.32	12.86	6.64	9.2	24.0	9.04	17.59	19.11
Merged-chr8-122111925-1	chr8	122111825	122112025	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133901.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	6.46	1.76	0.0	0.0	0.0	8.47	9.3	7.29	3.54	0.5	0.0	0.0
Merged-chr11-75032053-1	chr11	75031953	75032153	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	33938.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	2.02	6.04	8.56	4.83	9.41	2.2	5.98	7.91	6.1	8.54	14.07	8.46
Merged-chr11-57951753-3	chr11	57951585	57951785	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57379.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.86	6.29	7.99	7.24	7.77	9.09	2.33	2.64	5.7	7.53	3.52	4.7
Merged-chr14-19759927-1	chr14	19759827	19760027	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008695, intron 2 of 20)	intron (NM_008695, intron 2 of 20)	8670.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	2.83	6.04	6.85	9.65	11.05	4.7	13.95	8.07	6.88	1.51	5.53	2.19
Merged-chr19-21467178-1	chr19	21467078	21467278	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	5483.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.21	1.26	1.14	4.42	6.95	7.84	13.62	17.89	1.57	7.53	10.05	5.95
Merged-chr5-123027755-3	chr5	123027677	123027877	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	12703.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	9.69	9.31	13.69	24.53	19.64	9.41	11.96	20.61	8.85	5.52	11.56	12.22
Merged-chr12-105821460-1	chr12	105821360	105821560	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 15 of 21)	intron (NM_011112, intron 15 of 21)	36763.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.85	4.53	2.85	6.44	9.41	1.25	7.64	9.9	3.15	1.51	6.03	1.57
Merged-chr10-98725329-3	chr10	98725233	98725433	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-189309.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	16.15	11.07	9.13	6.84	21.27	17.56	12.62	18.76	12.39	20.59	16.08	10.02
Merged-chr17-28750777-3	chr17	28750678	28750878	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-18539.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	11.71	11.32	21.11	9.65	19.64	26.65	17.94	17.92	7.08	13.05	26.63	5.95
Merged-chr18-84848652-1	chr18	84848552	84848752	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-2686.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	7.27	4.02	1.14	3.62	5.73	10.03	8.3	10.07	8.46	4.02	6.03	2.82
Merged-chr8-35366744-1	chr8	35366644	35366844	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8997.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.04	5.03	5.7	4.02	19.23	10.35	3.32	10.12	1.77	0.0	2.51	0.31
Merged-chr8-73324521-3	chr8	73324401	73324601	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	29039.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	6.46	5.53	15.97	11.26	3.27	3.45	7.31	7.32	10.03	6.03	15.07	13.47
Merged-chr9-40563854-3	chr9	40563665	40563865	+	857.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-32382.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.25	5.28	6.85	6.44	4.09	1.88	9.3	8.21	6.49	11.55	8.04	7.21
Merged-chr12-111675928-3	chr12	111675835	111676035	+	857.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2170.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	7.27	11.57	5.7	14.88	9.41	9.41	13.62	10.96	20.65	15.06	11.56	15.04
Merged-chr14-16454834-3	chr14	16454740	16454940	+	857.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289760, intron 5 of 9)	GA-rich|Low_complexity|Low_complexity	89634.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	9.69	11.57	10.27	18.5	20.46	11.29	13.95	16.57	16.72	15.06	2.51	7.21
Merged-chr10-10459358-3	chr10	10459242	10459442	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	12972.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.83	6.29	14.26	19.71	12.27	12.54	11.29	23.75	13.37	13.56	18.09	16.29
Merged-chr6-140768378-3	chr6	140768291	140768491	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141506.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	11.71	4.78	10.84	6.44	16.36	12.23	9.3	8.72	28.13	23.1	24.12	20.05
Merged-chr17-27622942-3	chr17	27622852	27623052	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291046)	promoter-TSS (NM_001291046)	12.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	8.88	13.33	9.13	4.42	11.45	7.84	5.65	10.74	13.96	7.03	9.55	10.65
Merged-chr3-95862032-3	chr3	95861934	95862134	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355759)	TTS (NM_001355759)	-6149.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	10.9	11.07	12.55	11.26	14.32	14.11	9.3	16.91	23.41	44.69	18.09	16.29
Merged-chr1-7113095-3	chr1	7112985	7113185	+	857.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	24165.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	6.06	8.3	24.53	10.46	11.86	10.03	13.62	20.02	8.06	9.04	19.6	15.35
Merged-chr5-124012152-2	chr5	124012054	124012254	+	857.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15302.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	5.25	10.31	3.42	2.82	7.36	6.9	4.65	8.75	10.23	2.01	6.03	14.41
Merged-chr16-75874714-2	chr16	75874620	75874820	+	857.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	34546.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.63	0.5	2.28	0.8	7.77	16.93	27.24	20.24	10.82	10.54	18.59	6.89
Merged-chr9-25561329-2	chr9	25561246	25561446	+	857.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	79749.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.85	5.53	14.26	5.63	4.91	10.03	6.98	12.31	11.8	7.03	14.07	8.14
Merged-chr17-84238382-2	chr17	84238274	84238474	+	857.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-50427.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	12.92	6.79	15.4	8.45	11.05	20.38	17.27	22.49	5.31	6.03	11.56	5.95
Merged-chr3-123333277-3	chr3	123333142	123333342	+	857.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	52748.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	8.88	8.3	8.56	9.25	15.14	6.9	19.6	23.5	73.36	51.21	93.46	69.55
Merged-chr11-79527529-3	chr11	79527434	79527634	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033711, exon 2 of 2)	exon (NM_001033711, exon 2 of 2)	3075.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	8.88	7.55	5.7	13.27	13.09	15.99	5.31	14.33	12.98	9.04	16.58	10.34
Merged-chr10-21566289-3	chr10	21566201	21566401	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26844.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	13.73	4.78	7.99	13.27	9.41	10.03	4.98	8.33	18.49	18.08	21.61	15.04
Merged-chr9-47634942-3	chr9	47634861	47635061	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	104609.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	8.08	14.84	15.97	14.08	7.77	13.48	4.65	7.32	38.55	29.12	26.63	13.78
Merged-chr4-154159182-3	chr4	154159036	154159236	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1548.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	18.98	11.82	10.27	8.45	15.14	21.01	9.63	10.77	9.05	9.04	13.57	6.58
Merged-chr17-33638065-3	chr17	33637967	33638167	+	857.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	11.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	8.88	14.84	11.98	19.31	13.09	10.35	7.31	14.8	13.77	9.04	28.14	15.66
Merged-chr17-57339740-3	chr17	57339625	57339825	+	857.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18961.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	13.73	8.05	5.7	7.64	15.96	14.74	13.95	12.45	32.45	29.12	21.1	12.84
Merged-chr10-116572136-2	chr10	116572029	116572229	+	857.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	8407.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.86	6.54	7.99	5.63	6.55	17.25	4.65	8.05	17.11	13.56	23.62	6.27
Merged-chr18-80709738-2	chr18	80709640	80709840	+	857.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1567.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	12.11	7.29	13.69	13.27	6.55	1.25	8.97	11.33	3.54	12.05	4.02	2.51
Merged-chr7-126211095-3	chr7	126211009	126211209	+	857.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-10608.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	15.34	13.33	22.25	10.46	7.36	13.8	8.97	15.22	16.72	8.03	13.06	11.28
Merged-chr3-81981700-2	chr3	81981588	81981788	+	857.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5960.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	5.65	3.77	1.71	5.63	9.0	18.5	9.3	18.2	11.8	13.56	9.55	11.28
Merged-chr15-10714752-3	chr15	10714636	10714836	+	857.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166408)	promoter-TSS (NM_001166408)	-100.0	NR_045063	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	12.52	15.34	15.4	7.64	18.0	12.54	24.25	25.09	9.64	16.57	12.56	14.1
Merged-chr2-105674025-3	chr2	105673930	105674130	+	857.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1714.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	7.27	16.1	16.54	10.46	11.45	13.17	9.3	18.73	15.74	7.03	14.07	15.04
Merged-chr19-53311948-5	chr19	53311818	53312018	+	857.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	473.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.27	10.31	7.99	4.83	7.36	5.64	13.29	5.69	10.82	7.53	8.04	15.66
Merged-chr18-65328827-3	chr18	65328732	65328932	+	857.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037294, intron 4 of 12)	intron (NM_001037294, intron 4 of 12)	65056.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	17.77	35.21	34.23	11.66	11.05	37.94	20.59	8.16	14.16	14.06	16.08	8.14
Merged-chr1-127257207-3	chr1	127257087	127257287	+	857.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	MER77B|LTR|ERVL	52201.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	9.29	6.54	10.27	15.69	20.86	26.03	12.62	22.68	15.93	19.08	18.09	18.48
Merged-chr1-16797923-3	chr1	16797809	16798009	+	857.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109453.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	10.09	9.56	22.25	14.48	13.91	7.21	11.63	12.59	11.6	9.04	16.08	8.46
Merged-chr12-100440242-1	chr12	100440142	100440342	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	80580.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.63	7.04	5.7	11.66	20.86	10.98	9.63	5.86	8.65	11.05	6.03	2.51
Merged-chr6-99667456-3	chr6	99667355	99667555	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-684.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	12.11	8.55	27.38	13.67	11.45	13.8	12.62	18.76	11.01	8.03	16.08	9.71
Merged-chr15-41603493-3	chr15	41603386	41603586	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	154383.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	10.09	4.02	10.27	12.47	10.23	17.87	22.59	29.1	12.0	22.09	19.09	16.92
Merged-chr18-67252498-1	chr18	67252398	67252598	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-6668.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	0.81	2.01	10.27	6.44	9.41	14.74	7.64	8.05	12.0	1.51	2.51	5.01
Merged-chr17-48232685-3	chr17	48232607	48232807	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021406)	promoter-TSS (NM_021406)	-32.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	12.11	4.78	6.85	8.04	18.0	17.56	20.59	27.53	17.51	18.08	35.68	11.9
Merged-chr13-54819648-3	chr13	54819522	54819722	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30217.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	18.17	28.93	14.26	9.25	9.0	22.58	15.94	9.28	12.39	11.55	15.07	7.83
Merged-chr11-90224274-1	chr11	90224174	90224374	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-25202.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.85	1.01	6.28	2.41	8.18	5.33	6.64	13.68	4.52	3.51	6.53	5.64
Merged-chr6-48446153-1	chr6	48446053	48446253	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085417)	promoter-TSS (NM_001085417)	-328.0	NM_001355746	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	3.63	5.03	7.99	6.03	8.18	14.42	9.63	12.17	8.46	11.05	11.05	5.01
Merged-chr8-84739524-1	chr8	84739424	84739624	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	34845.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	1.62	4.53	3.99	3.62	4.09	2.82	7.64	7.26	3.74	0.5	4.52	0.31
Merged-chr9-111049270-3	chr9	111049157	111049357	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7987.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.27	13.33	22.82	10.86	13.5	23.52	12.62	12.14	24.0	6.53	23.11	9.4
Merged-chr16-15636694-1	chr16	15636594	15636794	+	857.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008565, exon 2 of 16)	exon (NM_008565, exon 2 of 16)	706.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	4.44	3.77	1.14	4.83	1.23	5.64	0.33	3.2	5.7	8.03	5.02	3.45
Merged-chr11-40776529-2	chr11	40776430	40776630	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21244.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	8.88	11.32	11.41	14.88	3.27	12.23	8.3	15.03	2.56	2.01	6.53	2.51
Merged-chr5-115623068-1	chr5	115622968	115623168	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172719)	TTS (NM_172719)	8748.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	4.04	5.03	2.28	4.02	3.68	9.72	3.65	6.9	6.1	4.52	7.54	4.07
Merged-chr2-84523284-1	chr2	84523184	84523384	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16411.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.85	6.29	7.99	4.83	11.45	3.14	7.97	8.27	5.7	5.02	7.54	0.94
Merged-chr18-11046259-1	chr18	11046159	11046359	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105023, intron 4 of 5)	MIR|SINE|MIR	-6251.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.81	3.27	1.71	8.04	5.73	6.59	5.98	14.89	3.34	2.01	1.51	1.57
Merged-chr2-131174828-3	chr2	131174744	131174944	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027641)	promoter-TSS (NM_027641)	-34.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	7.27	7.8	13.12	4.83	20.46	12.54	1.99	12.48	17.9	20.08	22.61	8.77
Merged-chr19-56732170-1	chr19	56732070	56732270	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9798.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.25	0.5	0.0	2.01	2.45	10.98	5.65	8.58	3.74	2.51	6.53	1.25
Merged-chr18-24223727-3	chr18	24223661	24223861	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	intron (NM_001361200, intron 1 of 12)	17767.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	7.27	11.07	15.4	16.09	14.73	17.87	17.94	24.95	17.11	8.03	11.05	6.58
Merged-chr19-44389174-2	chr19	44389069	44389269	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18540.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.44	5.28	12.55	6.03	11.05	13.8	9.3	15.48	12.78	16.57	15.07	5.33
Merged-chr3-152192687-3	chr3	152192564	152192764	+	856.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356364, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1181.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	12.52	5.03	3.42	3.62	9.0	15.37	4.98	7.79	26.36	18.58	10.05	12.84
Merged-chr5-122684154-3	chr5	122684064	122684264	+	856.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001284402, exon 13 of 13)	3' UTR (NM_001284402, exon 13 of 13)	1567.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	9.29	4.53	13.12	7.64	9.82	15.37	8.97	15.67	25.18	6.53	30.65	15.66
Merged-chr6-39538434-3	chr6	39538337	39538537	+	856.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	19397.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	11.71	11.57	13.69	9.65	15.96	16.93	19.93	23.72	19.67	11.05	20.6	5.01
Merged-chr8-70730307-3	chr8	70730187	70730387	+	856.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	CpG	6223.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	12.92	6.04	5.13	3.22	19.64	28.54	13.62	17.22	15.34	18.58	16.08	14.41
Merged-chr7-116491260-3	chr7	116491166	116491366	+	856.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13103.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	10.9	8.05	15.97	7.24	15.96	22.89	9.3	21.28	22.03	34.14	24.12	13.78
Merged-chr5-129942435-3	chr5	129942366	129942566	+	856.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	CpG	357.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	6.46	5.28	13.69	9.25	10.64	8.78	8.64	6.11	10.82	9.04	11.56	14.41
Merged-chr1-86437580-3	chr1	86437463	86437663	+	856.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11234.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	10.5	9.06	2.85	4.42	14.32	23.2	9.63	11.64	20.26	23.1	15.07	6.58
Merged-chr9-83652947-2	chr9	83652832	83653032	+	856.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38543.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	1.62	1.76	6.28	3.22	15.96	10.35	6.64	10.88	10.62	7.53	14.57	1.57
Merged-chr10-68141770-2	chr10	68141684	68141884	+	856.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	136942.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.06	7.55	15.4	14.88	18.0	6.59	11.29	8.58	2.95	3.01	2.01	3.13
Merged-chr12-36188385-2	chr12	36188290	36188490	+	856.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	29828.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	8.08	6.04	11.41	14.48	12.68	9.72	16.61	27.31	2.56	0.5	2.51	2.19
Merged-chr15-25285609-2	chr15	25285493	25285693	+	856.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128171.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.08	4.53	18.83	7.64	4.91	9.72	6.31	15.14	23.21	5.02	16.08	8.46
Merged-chr11-46806993-3	chr11	46806861	46807061	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3838.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.86	7.55	6.85	15.69	13.09	29.48	14.95	14.69	16.72	20.59	22.61	11.59
Merged-chr1-131446728-3	chr1	131446637	131446837	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	80624.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.63	10.56	20.54	8.04	15.55	10.35	13.62	13.65	13.77	20.08	25.12	6.27
Merged-chr14-34674692-3	chr14	34674555	34674755	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004436, intron 1 of 18)	CpG	727.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	2.83	6.79	5.7	9.25	14.73	11.6	9.3	9.22	13.18	14.56	19.6	12.53
Merged-chr2-167241121-3	chr2	167241027	167241227	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-590.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.44	6.29	16.54	15.69	6.55	3.14	7.64	13.85	16.13	9.54	21.1	9.71
Merged-chr2-52918336-1	chr2	52918236	52918436	+	856.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	60468.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	2.83	2.52	1.71	6.03	11.05	19.13	6.64	11.47	6.88	21.59	1.0	5.64
Merged-chr13-44646090-3	chr13	44645991	44646191	+	856.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-84683.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	6.06	6.54	14.26	13.27	15.96	11.29	16.61	27.7	9.44	3.51	29.65	10.65
Merged-chr15-84770307-3	chr15	84770213	84770413	+	856.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205334, intron 12 of 12)	intron (NM_001205334, intron 12 of 12)	-50047.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	8.88	11.32	32.52	11.66	10.23	12.23	8.64	13.49	13.96	8.03	10.05	20.05
Merged-chr1-106232623-2	chr1	106232525	106232725	+	856.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60756.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	13.73	4.02	3.42	14.88	8.59	6.9	28.57	24.11	5.7	4.52	14.57	5.64
Merged-chr9-15933126-2	chr9	15933021	15933221	+	856.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 21 of 24)	intron (NM_001080814, intron 21 of 24)	-58565.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	3.23	6.54	4.56	30.16	40.91	33.87	51.15	88.88	9.24	8.54	17.08	10.02
Merged-chr10-7832236-1	chr10	7832136	7832336	+	856.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172785)	promoter-TSS (NM_172785)	-234.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	5.25	10.82	6.85	7.64	9.82	7.53	6.31	5.61	3.93	8.54	5.53	6.58
Merged-chr2-30784450-3	chr2	30784368	30784568	+	856.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17269.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	9.29	13.58	6.28	16.89	16.77	24.15	10.63	6.98	14.36	31.13	20.6	10.02
Merged-chr8-71562921-3	chr8	71562790	71562990	+	856.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145598, exon 2 of 2)	exon (NM_145598, exon 2 of 2)	3759.0	NM_145598	234404.0	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	6.06	16.85	5.7	8.04	11.05	11.29	12.29	9.48	19.87	22.09	10.55	7.52
Merged-chr7-125551248-3	chr7	125551153	125551353	+	856.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1029.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.25	9.81	9.7	12.47	19.64	11.92	6.31	17.13	15.93	20.59	19.6	17.54
Merged-chr16-75853788-1	chr16	75853688	75853888	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	55478.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	13.33	9.56	13.69	8.45	0.0	0.63	0.66	1.12	0.39	0.0	0.0	0.31
Merged-chr7-28374331-3	chr7	28374237	28374437	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1675.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	6.46	8.55	13.69	7.24	18.41	10.03	7.97	6.2	17.11	17.57	10.55	10.02
Merged-chr6-86539626-3	chr6	86539515	86539715	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	12214.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	8.88	7.04	9.7	10.05	15.96	26.97	12.95	17.66	14.95	21.59	19.09	14.41
Merged-chr1-66700356-3	chr1	66700262	66700462	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	-469.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	13.73	8.05	10.84	10.86	13.09	9.09	11.96	13.18	12.78	7.53	17.59	7.21
Merged-chr2-71275927-3	chr2	71275797	71275997	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63951.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	16.96	11.32	9.7	16.09	8.59	11.92	15.28	22.29	11.41	7.53	15.07	5.33
Merged-chr14-86885666-2	chr14	86885588	86885788	+	856.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 20 of 27)	intron (NM_019670, intron 20 of 27)	255536.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.23	11.07	2.28	18.9	4.09	2.51	16.28	8.92	1.57	3.51	5.53	3.13
Merged-chr9-45253288-2	chr9	45253136	45253336	+	856.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008348)	TTS (NM_008348)	13471.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	7.67	8.3	9.13	4.02	11.86	17.87	8.3	4.82	11.8	15.06	8.54	2.82
Merged-chr7-71785166-2	chr7	71785065	71785265	+	856.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124530.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	8.08	8.8	24.53	15.28	17.18	6.27	20.93	39.56	1.57	0.0	1.0	0.94
Merged-chr5-122131276-3	chr5	122131164	122131364	+	856.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3629.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	7.27	5.79	13.69	8.85	12.68	15.37	13.29	15.17	12.19	11.05	20.6	16.6
Merged-chr3-9901774-2	chr3	9901623	9901823	+	856.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68044.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.04	2.26	3.42	5.23	6.14	6.59	10.3	5.78	9.05	5.02	10.05	1.57
Merged-chr16-5306830-3	chr16	5306719	5306919	+	856.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-50863.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	16.15	10.82	6.85	16.49	14.73	10.03	16.94	13.77	10.62	12.55	14.57	5.95
Merged-chr13-112102228-2	chr13	112102125	112102325	+	856.5750119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186226.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	9.69	13.33	25.67	20.11	11.45	4.39	13.95	9.79	8.26	3.01	2.51	1.25
Merged-chr1-80340039-5	chr1	80339908	80340108	+	856.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	682.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	7.27	10.82	13.69	8.04	9.82	14.11	9.63	8.8	11.01	8.03	19.09	12.22
Merged-chr11-84880101-6	chr11	84880022	84880222	+	856.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	73.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	16.56	14.09	2.28	6.44	12.68	12.23	9.63	6.98	9.83	21.59	9.04	11.28
Merged-chr7-115076966-1	chr7	115076866	115077066	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	125692.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	0.0	1.14	0.8	2.86	6.27	6.64	8.72	1.77	1.0	1.0	0.63
Merged-chr11-69581005-1	chr11	69580905	69581105	+	856.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	646.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	8.48	4.53	8.56	8.85	7.77	7.21	2.99	4.57	12.19	8.03	3.01	10.65
Merged-chr6-31502873-1	chr6	31502773	31502973	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 17 of 17)	intron (NM_013791, intron 17 of 17)	61064.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	9.69	3.02	1.71	14.48	6.14	5.02	8.3	17.66	1.18	2.01	7.03	11.59
Merged-chr7-114276684-2	chr7	114276609	114276809	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-593.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	7.67	5.28	5.7	4.02	5.32	4.39	9.3	7.91	10.82	7.53	20.6	8.14
Merged-chr6-145806842-2	chr6	145806748	145806948	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1535.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	2.02	3.77	1.71	7.64	0.0	4.39	9.3	11.75	9.44	3.51	15.07	8.77
Merged-chr5-107984796-3	chr5	107984682	107984882	+	856.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	ID_B1|SINE|B4	2295.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	9.69	6.79	12.55	6.84	14.32	26.03	12.29	25.12	10.23	17.07	17.08	11.28
Merged-chr15-25272111-3	chr15	25272055	25272255	+	856.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141609.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	62.18	74.96	77.58	88.89	4.91	10.98	3.99	7.18	13.77	8.54	13.06	12.53
Merged-chr4-141867661-3	chr4	141867529	141867729	+	856.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	7291.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	6.86	22.64	11.41	17.29	9.82	18.81	7.97	6.39	17.31	16.57	16.58	20.36
Merged-chr11-118483477-3	chr11	118483386	118483586	+	856.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6654.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	15.75	9.31	10.84	10.05	22.91	31.67	14.28	27.06	18.49	11.05	18.59	23.49
Merged-chr1-59907160-3	chr1	59907086	59907286	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-5820.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	11.31	6.54	15.4	14.08	17.18	10.03	9.63	17.78	7.87	5.52	12.06	11.9
Merged-chr3-129422005-3	chr3	129421865	129422065	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11708.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	3.63	5.28	14.83	12.07	6.14	10.35	7.31	13.79	13.37	5.52	14.07	6.27
Merged-chr15-97247351-3	chr15	97247201	97247401	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-14.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	15.75	11.82	7.42	6.44	11.45	10.03	2.99	12.93	11.41	13.05	10.55	5.95
Merged-chr17-8225914-3	chr17	8225816	8226016	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10127.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	16.56	11.82	18.25	17.29	9.0	13.48	7.97	22.01	8.65	13.05	19.09	4.7
Merged-chr13-40722946-3	chr13	40722877	40723077	+	856.4055789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122948, intron 4 of 6)	CpG	-4831.0	NR_125899	102633805.0		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	26.65	12.32	13.69	8.45	13.5	22.26	3.65	13.15	12.98	8.03	18.59	10.02
Merged-chr17-86125948-3	chr17	86125848	86126048	+	856.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 7 of 20)	intron (NM_030133, intron 7 of 20)	19227.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	13.73	11.57	23.96	12.87	10.23	10.35	8.3	20.3	19.47	7.53	18.59	8.14
Merged-chr15-6557097-3	chr15	6557010	6557210	+	856.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22737.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	10.9	2.77	13.69	10.05	41.32	29.79	37.54	45.42	14.95	10.54	28.64	5.95
Merged-chr10-93171330-3	chr10	93171221	93171421	+	856.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	8536.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	11.31	8.8	13.12	10.86	11.05	16.62	8.3	14.38	18.88	28.62	29.65	17.23
Merged-chr1-118498506-3	chr1	118498408	118498608	+	856.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 9 of 39)	intron (NM_001359330, intron 9 of 39)	-39243.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	12.11	10.82	8.56	5.63	11.45	12.86	3.32	16.26	18.29	8.54	14.57	15.04
Merged-chr18-53167081-2	chr18	53166974	53167174	+	856.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-9218.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.85	4.53	9.13	12.47	12.68	3.45	10.3	10.09	10.42	7.03	16.08	16.92
Merged-chr18-84854150-2	chr18	84854027	84854227	+	856.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	2789.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.44	3.77	6.28	10.86	14.32	7.84	13.29	14.92	12.78	16.07	6.03	5.01
Merged-chr4-34959680-2	chr4	34959571	34959771	+	856.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48190.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.81	3.02	3.99	2.41	4.09	9.72	13.29	12.53	3.93	5.52	12.06	11.28
Merged-chr2-112457201-1	chr2	112457101	112457301	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133749, intron 1 of 4)	intron (NM_133749, intron 1 of 4)	2176.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	7.27	6.54	7.42	6.03	9.41	9.41	2.99	8.52	5.11	6.03	2.01	12.84
Merged-chr10-127114551-3	chr10	127114459	127114659	+	856.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	6601.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	9.69	12.32	6.28	15.69	15.55	14.42	18.27	14.97	13.18	18.08	14.57	10.02
Merged-chr18-23751721-1	chr18	23751621	23751821	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	584.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	2.83	2.01	5.7	2.41	10.23	6.59	6.31	9.22	5.11	4.52	6.03	7.52
Merged-chr4-141669283-3	chr4	141669191	141669391	+	856.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-5176.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	17.77	19.37	4.56	13.27	13.5	13.17	1.99	15.28	7.08	6.53	14.57	15.04
Merged-chr7-71873998-3	chr7	71873894	71874094	+	856.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35701.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	19.79	16.1	35.37	18.1	33.55	24.46	34.55	44.47	9.24	3.51	8.54	11.28
Merged-chr9-63974828-1	chr9	63974728	63974928	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	47231.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	2.83	4.53	2.28	6.44	12.27	7.53	12.95	16.99	6.1	2.51	1.0	2.82
Merged-chr15-84139823-1	chr15	84139723	84139923	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16648.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	2.42	1.01	2.85	3.62	9.82	9.72	8.64	10.54	7.47	2.51	9.55	9.08
Merged-chr10-89747582-3	chr10	89747499	89747699	+	856.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	2608.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	5.65	2.52	13.12	8.85	11.86	9.09	7.64	14.38	13.18	8.03	10.55	11.28
Merged-chr10-53863682-3	chr10	53863572	53863772	+	856.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112763.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	9.69	5.79	7.42	15.69	15.55	10.66	10.3	20.38	18.1	6.03	18.59	13.78
Merged-chr17-7931757-3	chr17	7931663	7931863	+	856.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145968, intron 8 of 9)	intron (NM_145968, intron 8 of 9)	5763.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	28.67	11.32	6.85	9.65	23.73	15.37	13.95	14.41	18.1	10.54	5.02	5.33
Merged-chr10-115329341-3	chr10	115329261	115329461	+	856.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13770.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	10.5	9.56	1.71	6.44	11.05	12.54	8.97	4.74	9.05	14.06	20.6	16.29
Merged-chr3-95014879-3	chr3	95014786	95014986	+	856.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357863, intron 1 of 8)	CpG	352.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	9.69	12.07	13.12	8.85	10.23	14.11	25.58	6.22	12.59	12.05	12.56	9.08
Merged-chr9-122785413-3	chr9	122785311	122785511	+	856.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199736, intron 12 of 19)	intron (NM_001199736, intron 12 of 19)	-20136.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	12.11	7.55	13.12	10.86	13.91	5.64	9.97	20.94	23.6	8.03	54.27	13.16
Merged-chr17-72934311-1	chr17	72934211	72934411	+	856.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	16006.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.06	5.79	5.13	5.63	13.91	6.27	6.98	13.77	9.44	6.03	4.02	1.88
Merged-chr2-34372119-2	chr2	34372035	34372235	+	856.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-90.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	4.04	7.8	13.69	3.22	13.09	12.86	3.65	9.25	11.41	9.04	9.55	5.95
Merged-chr1-172027346-3	chr1	172027235	172027435	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-40.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	17.77	11.57	5.13	9.25	17.18	26.65	17.27	16.23	12.19	11.55	7.03	5.64
Merged-chr15-88828840-3	chr15	88828715	88828915	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9169.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	9.29	11.82	11.98	7.64	18.82	19.76	9.97	5.86	7.67	9.54	5.53	6.27
Merged-chr13-45507500-3	chr13	45507417	45507617	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025508)	promoter-TSS (NM_025508)	73.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	14.54	15.59	10.84	14.48	13.09	14.42	15.61	14.02	8.65	8.54	10.05	9.08
Merged-chr10-67123924-3	chr10	67123826	67124026	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3332.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	18.17	10.56	16.54	22.93	17.59	7.53	10.3	21.7	18.88	10.04	13.57	8.46
Merged-chr2-60923255-3	chr2	60923155	60923355	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	39949.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.63	7.8	11.41	7.24	16.36	11.29	10.96	14.5	25.57	19.08	22.11	8.77
Merged-chr11-88068515-5	chr11	88068416	88068616	+	856.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016686, intron 1 of 5)	CpG	237.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	9.29	11.07	9.7	10.46	8.18	8.78	10.96	8.64	16.52	23.6	21.1	9.08
Merged-chr18-64958319-3	chr18	64958234	64958434	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65193.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	12.11	7.55	8.56	13.27	10.64	10.03	6.98	11.92	33.63	26.11	32.16	17.54
Merged-chr1-149938001-3	chr1	149937919	149938119	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-15580.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.25	8.05	12.55	9.25	15.96	19.13	19.6	21.9	25.18	23.6	20.1	10.65
Merged-chr4-48591050-3	chr4	48590945	48591145	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021436, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	5871.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	10.09	17.61	19.4	14.48	7.77	13.48	4.65	14.07	22.42	13.56	15.07	14.41
Merged-chr10-122116787-3	chr10	122116702	122116902	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2895.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	17.36	9.81	4.56	6.44	4.91	6.59	14.28	11.07	17.9	14.56	22.61	7.21
Merged-chr19-8252250-3	chr19	8252120	8252320	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33320.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	18.98	13.33	15.4	17.29	13.09	15.37	10.96	12.11	14.95	9.04	22.11	17.23
Merged-chr13-91372046-1	chr13	91371946	91372146	+	856.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045161, intron 2 of 2)	intron (NR_045161, intron 2 of 2)	16039.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	4.04	3.52	5.13	2.41	4.91	7.84	7.31	5.13	8.46	2.51	3.52	2.82
Merged-chr2-34774349-8	chr2	34774205	34774405	+	856.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022310, exon 5 of 8)	exon (NM_022310, exon 5 of 8)	2215.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	8.48	6.79	4.56	7.64	6.14	4.7	4.98	3.87	10.82	14.56	8.54	5.01
Merged-chr3-14913508-3	chr3	14913403	14913603	+	856.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27215.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	25.04	6.79	6.85	10.05	23.73	13.8	11.96	18.9	23.6	21.09	17.08	17.23
Merged-chr2-158121775-3	chr2	158121752	158121952	+	856.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	24540.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.06	12.83	18.25	7.24	5.32	16.93	16.61	11.1	8.85	4.02	16.58	9.71
Merged-chr3-65891799-3	chr3	65891684	65891884	+	856.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66465.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	14.54	14.59	14.26	10.46	12.68	17.87	18.27	16.32	10.62	13.56	21.61	7.83
Merged-chr12-108180355-2	chr12	108180265	108180465	+	856.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009832, intron 1 of 11)	intron (NM_009832, intron 1 of 11)	627.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	4.04	5.79	7.42	8.04	9.0	12.54	8.97	9.9	10.82	13.56	13.06	12.84
Merged-chr2-120742553-3	chr2	120742458	120742658	+	856.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024856, intron 15 of 15)	intron (NM_001024856, intron 15 of 15)	-11041.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	12.92	8.8	23.39	7.64	11.45	16.62	17.61	24.06	12.19	7.03	15.07	12.22
Merged-chr12-98267814-3	chr12	98267708	98267908	+	856.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-827.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	8.88	9.56	25.67	8.85	18.0	10.35	13.62	24.34	17.51	13.05	29.14	13.47
Merged-chr1-161195820-4	chr1	161195773	161195973	+	856.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36559.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	1.21	6.29	6.28	3.22	6.95	7.53	13.95	4.96	4.13	11.05	6.53	6.89
Merged-chr12-113220735-3	chr12	113220630	113220830	+	856.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34827.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	21.0	16.85	11.98	15.69	14.73	30.73	14.62	23.05	12.39	9.04	21.1	5.64
Merged-chr10-12919440-3	chr10	12919331	12919531	+	856.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	3696.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	6.86	13.33	7.42	8.85	11.86	12.54	5.65	11.66	48.58	54.23	89.94	30.39
Merged-chr15-79895294-3	chr15	79895192	79895392	+	856.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347041, intron 1 of 7)	intron (NM_001347041, intron 1 of 7)	269.0	NM_001347041	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	24.23	6.79	19.4	16.89	30.68	17.87	28.9	21.08	8.26	3.01	6.53	9.4
Merged-chr11-106480708-3	chr11	106480624	106480824	+	856.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	7072.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	12.52	14.09	10.84	18.1	13.09	18.19	13.62	14.1	11.8	16.57	14.07	5.33
Merged-chr12-3572308-4	chr12	3572222	3572422	+	856.025024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149729)	promoter-TSS (NR_149729)	-69.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	6.86	4.53	7.99	9.25	8.59	9.41	7.31	3.81	15.14	16.07	10.55	5.33
Merged-chr9-103337158-3	chr9	103337057	103337257	+	856.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176979, intron 19 of 27)	intron (NM_176979, intron 19 of 27)	27822.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	12.92	11.32	10.27	8.85	11.05	10.98	8.3	13.96	31.27	20.08	29.14	23.49
Merged-chr1-95339792-3	chr1	95339710	95339910	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	26182.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	11.31	5.79	11.41	32.58	20.46	14.42	21.26	38.94	12.0	10.04	26.63	30.39
Merged-chr9-7244920-1	chr9	7244820	7245020	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27594.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	3.23	5.03	11.41	2.41	6.95	2.82	10.96	6.79	8.26	5.02	16.08	2.82
Merged-chr1-63437771-1	chr1	63437671	63437871	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-8120.0	NM_011780	23792.0	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	15.34	15.85	11.41	14.88	0.0	3.14	1.33	4.35	6.1	1.51	4.02	3.45
Merged-chr14-118595613-1	chr14	118595513	118595713	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 17 of 29)	intron (NM_001163676, intron 17 of 29)	-3141.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	1.62	0.5	9.13	3.22	10.64	6.59	1.99	11.13	3.15	2.01	7.03	2.51
Merged-chr16-58503631-1	chr16	58503531	58503731	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	MTD|LTR|ERVL-MaLR	19795.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	3.63	3.52	1.14	6.44	13.09	12.54	4.65	8.58	4.33	8.54	10.55	6.58
Merged-chr3-145691669-1	chr3	145691569	145691769	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-41684.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.5	5.7	2.01	4.5	1.88	10.63	7.35	3.74	5.02	4.02	5.01
Merged-chr18-74991307-2	chr18	74991206	74991406	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9171.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	4.85	6.79	11.41	4.83	4.5	4.39	5.98	6.2	12.39	8.03	11.56	13.78
Merged-chr8-11480538-1	chr8	11480438	11480638	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_126558)	TTS (NR_126558)	-2039.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	2.42	3.27	6.28	2.82	2.45	2.51	1.66	2.33	0.59	2.01	4.02	0.31
Merged-chr2-165300535-1	chr2	165300435	165300635	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12697.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	6.46	5.28	6.85	4.83	10.64	3.14	7.31	8.44	3.54	4.02	5.53	2.82
Merged-chr3-22024366-2	chr3	22024273	22024473	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52279.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.04	12.07	7.42	6.84	7.36	16.31	8.97	12.7	11.21	9.04	1.51	6.58
Merged-chr6-108826237-1	chr6	108826137	108826337	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2404.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	1.62	0.75	0.57	2.41	0.0	5.02	2.66	5.1	6.88	1.51	0.5	5.64
Merged-chr10-112803768-1	chr10	112803668	112803868	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33984.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	3.23	4.02	2.28	6.44	5.73	6.9	0.66	12.34	3.74	8.54	1.51	2.82
Merged-chr5-117356824-3	chr5	117356714	117356914	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-491.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	8.08	7.04	9.13	8.45	14.32	16.31	7.97	10.65	21.44	18.08	19.09	11.59
Merged-chr2-91078683-1	chr2	91078583	91078783	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8368.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	5.65	5.28	7.99	2.41	14.32	5.96	10.96	8.21	7.67	4.52	3.01	2.19
Merged-chr2-132591723-1	chr2	132591623	132591823	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-6473.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	1.62	6.04	1.14	4.42	8.18	3.14	10.63	10.88	6.49	1.51	6.53	3.76
Merged-chr10-36971012-1	chr10	36970912	36971112	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-3532.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	2.42	5.28	9.13	10.05	2.05	1.25	6.64	5.27	9.05	4.02	6.53	3.13
Merged-chr19-32935722-1	chr19	32935622	32935822	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	178145.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.65	6.79	0.0	5.23	11.45	9.09	4.98	10.18	6.49	6.53	1.51	7.52
Merged-chr11-54963024-2	chr11	54962935	54963135	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199276)	promoter-TSS (NM_001199276)	-95.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	15.34	18.11	7.42	3.22	4.5	10.98	2.99	1.4	18.29	6.03	19.09	7.83
Merged-chr8-70682942-2	chr8	70682845	70683045	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9714.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	9.69	6.29	4.56	0.0	11.05	6.27	6.98	7.09	10.82	8.03	19.6	5.33
Merged-chr3-16210115-3	chr3	16210029	16210229	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172677, intron 5 of 5)	intron (NM_172677, intron 5 of 5)	26964.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	20.19	11.32	10.27	19.71	20.86	10.98	17.27	19.71	21.83	13.05	13.06	11.9
Merged-chr2-144642148-1	chr2	144642048	144642248	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	42195.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	3.23	3.02	4.56	7.24	7.77	7.84	3.65	12.59	6.1	2.01	4.02	7.83
Merged-chr3-9347050-2	chr3	9346949	9347149	+	855.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56029.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	13.73	11.82	18.83	12.07	23.32	12.54	6.31	15.76	2.56	5.52	4.52	7.21
Merged-chr3-127035680-3	chr3	127035563	127035763	+	855.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 10 of 47)	L2|LINE|L2	-37211.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	16.15	7.55	29.66	15.69	4.91	11.92	5.98	22.96	55.27	34.65	76.88	29.45
Merged-chr1-74304609-3	chr1	74304490	74304690	+	855.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027154)	promoter-TSS (NM_027154)	-254.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	10.09	17.1	11.41	7.24	16.36	15.37	7.64	10.96	12.98	10.04	19.09	7.21
Merged-chr10-20398394-3	chr10	20398294	20398494	+	855.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013875, exon 13 of 13)	3' UTR (NM_013875, exon 13 of 13)	50575.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	9.69	9.06	13.12	24.94	6.95	15.68	9.97	18.7	9.24	3.51	22.11	15.66
Merged-chr10-33986986-3	chr10	33986891	33987091	+	855.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015526)	TTS (NR_015526)	8064.0	NR_015526	414093.0	Mm.156915	NR_015526	ENSMUSG00000112280	A830082N09Rik	Gm17567	RIKEN cDNA A830082N09 gene	ncRNA	11.71	8.8	13.12	8.45	8.59	16.93	8.64	13.35	18.1	16.07	21.61	6.27
Merged-chr5-76430103-2	chr5	76429996	76430196	+	855.9249880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53981.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	3.23	2.01	6.28	8.04	9.41	12.54	15.94	32.19	20.46	13.56	19.09	6.58
Merged-chr2-6380094-3	chr2	6379996	6380196	+	855.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27360.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.25	11.32	14.26	7.64	15.96	12.54	16.94	15.79	9.83	10.54	7.54	10.96
Merged-chr11-59559789-2	chr11	59559687	59559887	+	855.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	11951.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	8.08	4.78	2.28	4.02	11.05	16.31	14.95	17.13	11.8	7.03	9.04	9.08
Merged-chr19-40728926-3	chr19	40728846	40729046	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	69176.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.27	9.56	6.28	8.04	11.45	16.31	19.93	35.3	14.55	17.07	29.14	11.9
Merged-chr6-88379934-3	chr6	88379837	88380037	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	66602.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	14.13	3.27	15.4	14.08	15.14	8.47	9.97	19.12	10.23	7.53	13.57	7.83
Merged-chr16-30466077-3	chr16	30465988	30466188	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-77558.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	8.48	5.53	10.84	7.24	11.86	14.11	16.94	18.45	39.93	31.13	30.65	33.21
Merged-chr17-25823609-3	chr17	25823505	25823705	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173741)	promoter-TSS (NM_173741)	-22.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	15.75	8.8	9.13	7.24	11.45	13.17	6.64	12.03	16.13	19.08	21.1	8.14
Merged-chr6-28866375-3	chr6	28866274	28866474	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-34627.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	12.52	10.31	3.42	2.01	13.91	17.87	9.63	8.47	17.7	19.08	10.05	3.13
Merged-chr18-84091722-3	chr18	84091628	84091828	+	855.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	3570.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	10.09	13.08	17.11	13.67	12.27	9.72	5.31	13.82	17.51	11.55	20.1	9.08
Merged-chr6-39226705-3	chr6	39226620	39226820	+	855.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19947.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	9.29	2.52	17.68	21.32	18.0	12.23	21.26	21.73	10.62	7.03	12.56	9.08
Merged-chr16-57441247-2	chr16	57441150	57441350	+	855.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	87973.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.85	3.52	3.42	18.5	10.23	11.29	20.93	24.28	19.47	8.54	47.74	13.16
Merged-chr2-153208323-2	chr2	153208222	153208422	+	855.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 17 of 17)	MTC|LTR|ERVL-MaLR	17119.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	7.27	8.05	3.42	3.62	4.5	10.35	11.29	8.3	13.96	8.03	20.6	5.01
Merged-chr19-6891294-2	chr19	6891199	6891399	+	855.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-18399.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	6.46	4.28	3.42	3.22	13.91	11.6	11.63	3.28	13.57	15.57	12.56	2.82
Merged-chr2-84733957-3	chr2	84733854	84734054	+	855.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005342)	promoter-TSS (NM_001005342)	-250.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	8.08	8.3	3.42	10.86	6.14	9.09	6.98	5.07	10.42	17.07	13.06	11.9
Merged-chr3-127282547-3	chr3	127282443	127282643	+	855.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	121238.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	11.71	15.59	18.25	23.33	15.96	21.64	34.55	44.38	6.1	8.03	6.53	6.27
Merged-chr6-71442237-3	chr6	71442153	71442353	+	855.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1616.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	14.54	10.56	22.82	9.65	17.18	17.25	9.3	15.11	17.7	9.54	15.58	9.08
Merged-chr11-62731750-4	chr11	62731590	62731790	+	855.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2597.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	6.46	9.81	18.25	8.45	7.36	13.48	12.29	9.11	7.08	12.55	13.57	12.84
Merged-chr8-57512889-2	chr8	57512772	57512972	+	855.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008252, intron 2 of 4)	CpG-14025	1029.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	10.09	9.56	1.71	3.22	12.68	5.96	6.31	13.68	5.11	8.54	13.06	3.76
Merged-chr4-134286374-3	chr4	134286272	134286472	+	855.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146156, intron 1 of 2)	intron (NM_146156, intron 1 of 2)	881.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	11.71	8.55	6.85	2.41	18.82	7.84	9.63	12.39	19.47	19.08	15.58	8.14
Merged-chr12-35890905-3	chr12	35890814	35891014	+	855.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-34707.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	7.27	5.03	15.4	13.67	22.09	12.54	11.96	10.91	13.37	14.56	14.07	5.95
Merged-chr1-144005815-3	chr1	144005711	144005911	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1662.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	11.31	6.79	7.99	10.05	18.41	11.29	17.94	21.31	24.98	21.59	26.13	19.11
Merged-chr11-120720633-3	chr11	120720530	120720730	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	-838.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	22.21	13.58	7.42	6.84	17.59	10.35	4.65	8.05	14.95	13.05	11.56	15.66
Merged-chr3-138118942-3	chr3	138118832	138119032	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	12721.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	8.08	7.8	13.69	8.45	10.64	15.99	10.96	16.85	19.28	18.08	16.08	4.7
Merged-chr6-125252909-3	chr6	125252816	125253016	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12609.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	8.48	8.55	4.56	12.47	14.73	14.42	17.27	15.73	14.55	13.05	19.6	6.27
Merged-chr11-103345109-3	chr11	103345003	103345203	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133715)	promoter-TSS (NM_133715)	350.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	6.86	9.31	12.55	12.87	14.32	11.92	8.3	9.93	15.54	15.06	19.6	10.96
Merged-chr7-144471274-3	chr7	144471175	144471375	+	855.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007803)	promoter-TSS (NM_007803)	-340.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	14.54	9.31	17.11	14.08	15.55	8.15	11.63	16.29	15.54	17.57	23.62	9.71
Merged-chr4-133131416-4	chr4	133131296	133131496	+	855.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	763.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	16.96	11.07	6.85	5.63	12.27	21.64	6.98	5.58	11.41	20.08	5.53	9.71
Merged-chr1-120258967-1	chr1	120258867	120259067	+	855.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	6313.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	9.69	3.77	5.7	4.02	9.0	7.84	8.3	10.21	1.57	1.0	3.01	1.25
Merged-chr9-57879399-2	chr9	57879308	57879508	+	855.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31578.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	8.48	7.8	9.13	4.02	9.82	7.84	14.62	11.36	28.72	19.08	13.57	12.22
Merged-chr4-119142407-3	chr4	119142312	119142512	+	855.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	31444.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	6.46	7.55	12.55	9.25	17.18	17.25	10.3	13.01	27.54	26.61	47.74	16.92
Merged-chr9-83610048-3	chr9	83609956	83610156	+	855.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	14.94	7.04	14.83	5.23	8.59	11.6	11.96	8.94	12.78	9.04	15.07	9.08
Merged-chr9-120073346-3	chr9	120073222	120073422	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5026.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	9.29	9.56	6.85	12.47	14.73	11.92	8.3	9.7	11.8	15.06	22.11	15.04
Merged-chrX-134583529-1	chrX	134583429	134583629	+	855.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013482)	promoter-TSS (NM_013482)	-389.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	7.67	2.52	5.7	10.86	9.0	7.84	6.31	6.98	4.72	7.53	5.53	5.64
Merged-chr8-41047061-3	chr8	41046964	41047164	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5133.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	9.69	5.79	1.71	9.65	21.68	26.34	27.9	33.25	46.62	37.66	55.27	35.71
Merged-chr12-105869459-1	chr12	105869359	105869559	+	855.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	84762.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.81	0.75	3.99	7.64	6.55	10.98	6.98	19.29	3.93	2.51	3.01	0.63
Merged-chr14-40949893-3	chr14	40949775	40949975	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	L1MC4|LINE|L1	-1666.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	2.42	8.8	5.13	12.47	11.45	12.23	4.98	17.27	15.34	13.56	6.53	5.01
Merged-chr2-92253967-1	chr2	92253867	92254067	+	855.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	32405.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	1.62	1.01	0.0	0.8	12.68	9.41	8.97	17.97	5.31	3.51	4.52	1.25
Merged-chr14-31685806-3	chr14	31685644	31685844	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	44687.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	7.67	16.1	8.56	9.65	7.36	6.27	5.65	4.54	2.75	7.03	10.55	6.58
Merged-chr3-69691231-2	chr3	69691156	69691356	+	855.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-30799.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.25	3.27	5.7	5.23	9.41	12.54	6.31	4.63	17.51	22.09	17.08	13.47
Merged-chr5-64160209-3	chr5	64160145	64160345	+	855.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310611)	promoter-TSS (NM_001310611)	-15.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	12.11	15.59	13.12	12.47	7.36	11.6	9.63	7.88	17.51	13.05	11.56	11.9
Merged-chr4-155116724-2	chr4	155116620	155116820	+	855.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	30116.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	9.69	8.55	10.84	15.28	16.77	8.78	13.95	24.36	7.28	2.01	17.59	5.64
Merged-chr13-21735482-3	chr13	21735367	21735567	+	855.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178210)	TTS (NM_178210)	433.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	9.69	7.04	7.42	10.46	13.91	9.41	10.96	11.02	14.36	12.05	16.08	15.98
Merged-chr17-57017574-3	chr17	57017467	57017667	+	855.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6279.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	4.85	10.56	6.85	12.87	12.27	14.11	5.65	17.72	14.95	9.04	21.1	24.75
Merged-chr7-114168491-3	chr7	114168396	114168596	+	855.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	-50715.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	5.25	12.83	17.68	12.47	3.68	4.39	3.65	5.72	39.53	13.56	27.13	16.29
Merged-chr10-44400344-3	chr10	44400235	44400435	+	855.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40659.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	9.69	8.3	25.67	11.26	8.18	10.98	8.3	22.63	14.16	14.56	23.62	13.16
Merged-chr7-28907408-3	chr7	28907308	28907508	+	855.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021895, intron 8 of 20)	intron (NM_021895, intron 8 of 20)	25752.0	NM_001110807	60594.0	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	10.5	8.8	4.56	9.25	27.41	23.83	9.3	26.86	18.29	20.59	11.05	9.4
Merged-chr2-124574112-6	chr2	124574027	124574227	+	855.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-36169.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	9.29	2.26	12.55	5.63	12.68	7.21	8.97	3.84	7.28	7.03	9.55	8.46
Merged-chr11-69605989-3	chr11	69605904	69606104	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013415)	promoter-TSS (NM_013415)	-44.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	14.94	13.58	15.97	10.05	14.32	18.19	7.97	9.76	15.14	12.55	15.07	10.02
Merged-chr16-75929727-2	chr16	75929609	75929809	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20443.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.04	3.27	4.56	8.04	15.14	17.56	21.59	16.49	10.23	15.06	10.05	10.65
Merged-chr15-66686857-2	chr15	66686756	66686956	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009375, intron 11 of 47)	intron (NM_009375, intron 11 of 47)	16086.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	10.9	9.56	7.42	11.26	18.0	15.68	7.31	13.96	12.19	8.54	9.04	4.07
Merged-chr7-45935326-2	chr7	45935233	45935433	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033243, intron 2 of 12)	intron (NM_001033243, intron 2 of 12)	6935.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	4.85	3.52	5.7	6.44	5.32	5.96	10.96	5.72	10.03	1.51	13.57	3.45
Merged-chr1-180392270-3	chr1	180392167	180392367	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-61718.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	11.71	10.31	13.69	5.63	10.23	18.19	9.3	10.29	25.18	23.1	29.65	9.08
Merged-chr15-31369454-1	chr15	31369354	31369554	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1695.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.85	7.55	3.99	2.01	12.27	10.35	4.98	10.09	5.51	3.51	5.02	2.82
Merged-chr12-36032655-2	chr12	36032567	36032767	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	9811.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.86	1.76	14.83	9.25	20.86	12.86	15.94	31.68	3.15	4.52	3.01	1.25
Merged-chr1-37622111-3	chr1	37622009	37622209	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028096, intron 7 of 9)	intron (NM_028096, intron 7 of 9)	-81093.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	13.33	6.29	5.13	16.09	3.68	5.96	5.31	12.98	7.87	5.52	14.07	4.7
Merged-chr5-90247295-1	chr5	90247195	90247395	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23299.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	1.62	3.27	8.56	5.63	5.32	8.47	5.98	11.52	6.29	1.51	9.55	4.07
Merged-chr8-35498481-3	chr8	35498372	35498572	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-2939.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	15.75	10.82	7.99	8.45	23.32	10.03	9.63	10.29	13.18	29.12	33.16	14.72
Merged-chr6-122945034-1	chr6	122944934	122945134	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-7481.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	7.27	2.01	12.55	3.22	6.95	4.08	8.97	8.16	4.52	6.03	3.52	3.13
Merged-chr1-78507389-3	chr1	78507275	78507475	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3685.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	11.31	5.28	2.28	10.46	11.86	4.7	13.29	16.46	15.74	3.51	24.62	10.65
Merged-chr16-23592743-1	chr16	23592643	23592843	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17176.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	4.04	3.52	13.12	2.82	11.05	5.96	11.29	11.55	8.65	5.02	6.03	5.64
Merged-chr13-43775446-3	chr13	43775322	43775522	+	855.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9690.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.86	13.33	8.56	10.86	14.73	12.86	19.6	10.29	37.37	20.08	17.59	13.16
Merged-chr7-81290748-3	chr7	81290650	81290850	+	855.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 3 of 21)	MER105|DNA|DNA	54484.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	9.29	11.57	23.96	8.85	15.96	13.8	9.63	25.4	11.01	11.05	17.08	11.28
Merged-chr7-34380501-2	chr7	34380394	34380594	+	855.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	9211.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	5.25	9.31	17.11	17.29	9.82	8.47	14.28	22.74	21.24	12.05	21.1	24.75
Merged-chr1-165703228-3	chr1	165703119	165703319	+	855.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	4875.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	18.17	29.68	9.13	10.46	11.05	55.82	15.94	6.08	48.19	39.16	23.62	4.07
Merged-chr10-128499470-3	chr10	128499388	128499588	+	855.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172259)	promoter-TSS (NM_172259)	241.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	7.67	8.05	10.84	3.62	3.27	10.35	8.3	8.83	11.21	16.07	13.06	10.96
Merged-chr12-105781524-3	chr12	105781419	105781619	+	855.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030187, intron 17 of 17)	intron (NM_030187, intron 17 of 17)	-3178.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	10.9	10.82	10.27	14.08	4.91	14.74	11.63	16.43	30.09	10.54	18.59	19.11
Merged-chr1-132367775-2	chr1	132367667	132367867	+	855.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001311108, exon 1 of 4)	5' UTR (NM_001311108, exon 1 of 4)	181.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.65	5.28	7.42	2.01	13.91	10.03	7.64	11.41	9.24	11.05	18.59	10.65
Merged-chr14-63443644-5	chr14	63443556	63443756	+	855.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	7262.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	9.69	9.31	6.28	19.71	15.14	9.09	13.95	11.33	12.19	9.04	17.08	12.22
Merged-chr5-43048558-1	chr5	43048458	43048658	+	855.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-184905.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	7.67	1.26	2.85	1.21	10.23	3.76	4.65	10.18	4.52	3.51	6.53	2.19
Merged-chr7-80501099-3	chr7	80500997	80501197	+	855.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	33901.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	15.75	17.1	15.4	10.86	15.96	27.28	17.61	14.66	23.21	10.54	12.06	18.8
Merged-chr13-98807869-3	chr13	98807770	98807970	+	855.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	7579.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	15.34	7.55	13.69	11.66	15.96	16.31	7.97	15.14	19.67	6.53	2.01	10.34
Merged-chr19-9911518-3	chr19	9911419	9911619	+	855.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11986.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	10.09	19.62	9.7	14.08	6.14	9.72	6.98	9.9	16.33	6.53	15.07	6.89
Merged-chr1-173942521-3	chr1	173942445	173942645	+	855.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302651)	promoter-TSS (NM_001302651)	-53.0	NM_001302651	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	10.09	6.04	8.56	11.26	25.36	15.05	18.93	14.97	24.98	26.11	19.09	17.54
Merged-chr16-52082065-3	chr16	52081990	52082190	+	855.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	50541.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	9.69	5.79	17.68	13.27	13.5	6.27	9.63	15.45	18.88	12.05	18.09	10.34
Merged-chr7-34167997-2	chr7	34167885	34168085	+	855.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016682, intron 1 of 16)	MIR|SINE|MIR	544.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	3.23	3.27	3.42	8.04	14.32	10.35	11.63	13.88	14.55	10.04	11.05	7.83
Merged-chr3-153797763-1	chr3	153797663	153797863	+	855.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5676.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	5.65	3.52	4.56	7.64	11.45	10.35	11.96	13.01	5.11	1.0	9.55	6.27
Merged-chr13-23778475-1	chr13	23778375	23778575	+	855.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4066.0	NM_001029935	214158.0	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	10.09	5.79	6.85	3.22	18.41	7.84	7.31	10.51	6.29	3.01	4.52	3.45
Merged-chr4-94768815-2	chr4	94768705	94768905	+	855.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013690, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	29516.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	12.92	8.55	13.12	14.88	11.45	12.23	17.94	42.08	1.77	5.02	4.52	3.76
Merged-chr9-107259842-1	chr9	107259742	107259942	+	855.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316691, intron 5 of 7)	intron (NM_001316691, intron 5 of 7)	-27933.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0.0	6.04	2.28	1.61	6.14	6.9	7.31	10.01	1.38	0.5	2.01	3.13
Merged-chr1-84363381-3	chr1	84363275	84363475	+	855.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78730.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.04	5.28	11.41	10.05	14.32	19.44	8.3	17.33	15.14	13.56	22.61	4.7
Merged-chr1-165120537-3	chr1	165120468	165120668	+	855.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28638.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	8.48	12.32	6.85	6.44	12.68	12.86	11.63	14.8	18.88	12.55	19.6	10.65
Merged-chr13-51853545-3	chr13	51853434	51853634	+	855.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6859.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	9.29	10.56	9.13	9.25	18.0	19.13	20.26	6.2	10.82	22.09	15.58	14.72
Merged-chr8-70605799-2	chr8	70605698	70605898	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	2516.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.67	6.54	4.56	5.63	9.0	5.96	4.98	8.8	20.06	14.06	20.1	14.1
Merged-chr11-115657087-2	chr11	115656995	115657195	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-28800.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	2.83	4.02	6.85	5.63	13.09	13.17	5.98	10.23	11.01	16.57	31.66	8.14
Merged-chr18-8678027-2	chr18	8677932	8678132	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-534824.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	5.25	13.83	7.99	11.26	5.73	17.87	7.97	6.0	30.29	8.03	21.61	14.41
Merged-chr9-102793185-1	chr9	102793085	102793285	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-41735.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	6.86	2.01	0.57	1.61	7.36	5.02	3.99	7.6	1.57	0.5	3.52	1.57
Merged-chr13-23517953-6	chr13	23517855	23518055	+	855.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13089.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	9.29	5.53	6.28	6.03	6.14	8.47	5.98	5.36	6.88	16.07	6.03	15.98
Merged-chr14-87075321-1	chr14	87075221	87075421	+	855.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 3 of 27)	ORR1C1|LTR|ERVL-MaLR	65903.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.83	3.27	12.55	8.85	10.23	10.98	13.95	17.8	1.57	1.51	5.02	5.64
Merged-chr10-43842003-3	chr10	43841861	43842061	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	16054.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	1.62	5.28	5.7	15.69	9.0	5.96	6.31	7.04	10.23	6.53	13.06	5.01
Merged-chr2-129314108-3	chr2	129314007	129314207	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-4135.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	13.33	13.08	11.41	11.26	27.0	22.26	9.63	23.07	28.13	17.57	21.1	12.53
Merged-chr10-108178607-3	chr10	108178495	108178695	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	RSINE1|SINE|B4	16195.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	25.84	9.06	10.27	21.32	17.59	15.99	25.24	39.98	15.74	12.05	36.18	16.29
Merged-chr13-48550733-3	chr13	48550627	48550827	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12455.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	8.88	7.29	4.56	4.83	12.68	17.25	8.97	8.52	15.34	6.03	40.2	13.16
Merged-chr14-15061386-2	chr14	15061287	15061487	+	855.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240572.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.63	3.27	4.56	2.41	6.95	7.21	8.3	12.36	14.95	3.01	16.08	11.28
Merged-chr11-20240628-2	chr11	20240470	20240670	+	855.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172260, exon 3 of 7)	exon (NM_172260, exon 3 of 7)	8854.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.0	6.54	2.28	0.0	1.64	6.9	3.65	0.64	4.13	6.53	5.53	0.94
Merged-chr16-12471739-2	chr16	12471633	12471833	+	855.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-339657.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.23	5.28	11.41	2.82	21.27	22.58	2.66	22.77	14.95	17.07	9.04	6.89
Merged-chr16-44018541-2	chr16	44018441	44018641	+	855.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 5 of 16)	intron (NM_001359085, intron 5 of 16)	-2105.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	6.46	11.57	10.27	5.63	7.77	13.8	7.64	11.78	16.92	8.54	17.59	10.02
Merged-chr14-27341640-3	chr14	27341554	27341754	+	855.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	MIRb|SINE|MIR	5617.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	8.08	10.56	9.7	4.02	16.77	33.24	11.29	7.71	33.63	34.14	27.64	5.64
Merged-chr9-48745154-2	chr9	48745047	48745247	+	855.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	90798.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.0	1.01	1.14	3.62	7.77	4.08	6.64	8.8	15.34	19.58	16.08	24.75
Merged-chr3-90710214-2	chr3	90710127	90710327	+	855.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-14506.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	5.25	5.28	3.42	12.07	14.32	11.29	8.97	8.02	6.49	11.55	27.13	11.59
Merged-chr14-66190452-3	chr14	66190284	66190484	+	855.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 2 of 30)	L2b|LINE|L2	23440.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	11.31	9.81	13.12	2.82	16.77	11.29	10.63	12.53	19.08	9.54	8.04	4.7
Merged-chr2-153444224-6	chr2	153444089	153444289	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 4 of 10)	CpG	290.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	12.52	7.29	15.4	12.47	11.05	6.9	6.31	8.07	7.08	12.55	14.57	8.77
Merged-chr9-45417414-3	chr9	45417306	45417506	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	11329.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	14.13	6.54	13.69	9.25	20.46	22.58	15.94	10.77	23.6	19.58	33.16	10.02
Merged-chr12-33040960-3	chr12	33040841	33041041	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 15 of 19)	intron (NM_001024478, intron 15 of 19)	51934.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	10.9	9.81	7.99	10.05	17.18	26.34	10.96	23.07	38.35	22.59	22.11	10.02
Merged-chr16-91545722-3	chr16	91545592	91545792	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1402.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.06	11.32	8.56	6.03	4.09	6.59	8.3	7.4	12.98	13.05	14.57	10.65
Merged-chr10-127559058-1	chr10	127558958	127559158	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 45 of 88)	intron (NM_008512, intron 45 of 88)	-24499.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	6.86	1.26	0.0	3.22	1.23	2.51	2.33	2.75	2.75	4.02	6.53	0.31
Merged-chr3-101618195-1	chr3	101618095	101618295	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-13488.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	6.79	2.28	3.22	1.64	1.57	3.99	5.3	1.77	3.51	5.02	5.64
Merged-chr2-13479835-1	chr2	13479735	13479935	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 6 of 66)	intron (NM_001081084, intron 6 of 66)	12041.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.85	1.76	4.56	5.23	6.14	3.45	8.3	9.39	2.56	3.01	1.51	1.57
Merged-chr6-72096959-1	chr6	72096859	72097059	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-649.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.85	1.01	3.99	3.22	5.32	7.21	5.65	6.11	6.29	6.53	8.04	8.14
Merged-chr18-39559545-1	chr18	39559445	39559645	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72300.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.42	7.55	10.27	2.41	13.5	18.19	10.96	10.01	4.33	1.51	7.03	1.57
Merged-chr12-34701666-2	chr12	34701576	34701776	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-172787.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.25	3.27	6.28	2.82	14.32	10.35	9.3	11.83	18.88	7.03	8.04	9.08
Merged-chr10-89703226-2	chr10	89703140	89703340	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16877.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	0.0	1.76	8.56	4.02	3.27	3.45	7.97	6.93	15.34	8.54	14.07	6.27
Merged-chr13-20379764-1	chr13	20379664	20379864	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-93226.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.83	5.03	6.85	7.24	1.23	8.15	3.65	9.22	5.51	4.52	5.02	5.01
Merged-chr4-133632207-1	chr4	133632107	133632307	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1222.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.81	1.76	3.99	1.61	5.73	10.66	8.64	11.66	1.57	4.02	6.03	2.19
Merged-chr16-95800803-1	chr16	95800703	95800903	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	97910.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.63	2.52	2.85	6.44	3.68	6.9	3.32	10.18	6.88	5.02	5.02	4.39
Merged-chr17-42909582-2	chr17	42909483	42909683	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33159.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.85	4.02	4.56	2.01	13.09	10.03	5.65	4.12	66.87	62.26	54.77	35.71
Merged-chr15-27988342-1	chr15	27988242	27988442	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	MTC|LTR|ERVL-MaLR	37506.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.4	1.76	6.85	10.46	2.45	9.72	2.66	6.98	4.92	3.01	0.0	0.94
Merged-chr12-110855601-1	chr12	110855501	110855701	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001199785, exon 2 of 7)	exon (NM_001199785, exon 2 of 7)	5322.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.81	0.0	0.0	0.0	6.14	8.15	2.99	9.42	4.72	5.52	5.53	4.07
Merged-chr13-74390442-1	chr13	74390342	74390542	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13876.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	11.31	6.79	6.28	1.61	3.68	10.03	9.3	5.24	10.82	5.02	8.54	6.58
Merged-chr2-129197916-1	chr2	129197816	129198016	+	855.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-857.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	2.02	4.78	9.13	7.64	2.86	8.47	3.65	5.1	10.03	3.51	11.05	6.27
Merged-chr16-23269567-1	chr16	23269467	23269667	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-20903.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.25	3.77	13.69	8.04	6.14	4.08	11.29	11.1	5.31	7.53	8.54	4.07
Merged-chr8-70606827-2	chr8	70606717	70606917	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1497.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	2.42	5.53	6.85	3.62	2.45	4.08	0.66	1.99	10.23	5.52	7.03	4.7
Merged-chr10-121305656-1	chr10	121305556	121305756	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 4 of 12)	intron (NM_001361015, intron 4 of 12)	5740.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.65	3.52	4.56	3.22	3.27	10.35	6.64	10.51	2.75	4.52	10.05	4.7
Merged-chr14-103155900-1	chr14	103155800	103156000	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_207215, exon 58 of 85)	exon (NM_207215, exon 58 of 85)	-56334.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	1.62	1.01	0.0	1.61	10.23	1.25	2.99	7.46	3.15	0.0	5.53	9.08
Merged-chr2-33871068-1	chr2	33870968	33871168	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16878.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.25	0.0	0.0	9.82	4.08	2.66	7.23	3.34	3.51	4.52	4.07
Merged-chr8-33855777-1	chr8	33855677	33855877	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042675, intron 4 of 6)	L1MB4|LINE|L1	74086.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.0	1.01	4.56	1.21	0.82	1.57	6.98	7.96	0.39	0.0	0.5	0.0
Merged-chr10-39490434-1	chr10	39490334	39490534	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	120635.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	2.42	1.51	3.42	0.4	9.41	4.08	4.65	10.32	4.92	1.0	2.51	3.13
Merged-chr7-116504846-1	chr7	116504746	116504946	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130479, intron 1 of 13)	intron (NM_001130479, intron 1 of 13)	477.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.63	7.8	6.85	5.23	3.27	6.27	7.64	8.07	6.69	9.54	18.09	3.13
Merged-chr16-89830481-1	chr16	89830381	89830581	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 15 of 27)	intron (NM_009384, intron 15 of 27)	-12129.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.44	2.01	5.13	2.82	4.91	9.41	3.32	5.94	5.11	1.51	4.52	6.27
Merged-chr17-12770118-2	chr17	12770035	12770235	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	-429.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	12.11	9.06	7.99	4.02	13.09	18.19	7.31	7.6	15.93	17.57	14.57	8.77
Merged-chr2-146948679-2	chr2	146948591	146948791	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033298, intron 9 of 13)	intron (NM_001033298, intron 9 of 13)	-64308.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	7.27	10.56	17.68	19.31	7.36	9.41	8.97	18.06	2.16	1.51	3.01	4.39
Merged-chr3-121426444-1	chr3	121426344	121426544	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028044)	promoter-TSS (NM_028044)	-97.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	2.42	7.04	6.85	10.05	8.59	4.7	7.31	8.19	7.67	3.01	7.03	6.58
Merged-chr11-106193076-1	chr11	106192976	106193176	+	855.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252449, intron 1 of 10)	intron (NM_001252449, intron 1 of 10)	527.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	5.65	6.29	5.13	6.03	3.68	8.47	4.65	4.71	9.05	12.05	20.6	7.21
Merged-chr10-26376891-1	chr10	26376791	26376991	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1672.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	6.46	6.29	7.99	9.65	5.32	7.21	2.33	7.79	7.67	1.51	6.03	3.45
Merged-chr1-39714211-3	chr1	39714114	39714314	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145660, intron 2 of 14)	intron (NM_001145660, intron 2 of 14)	6775.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	8.08	6.04	3.99	3.22	36.41	34.49	41.85	30.93	18.1	19.08	42.21	11.9
Merged-chr15-67146860-2	chr15	67146752	67146952	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	30030.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.04	2.52	7.99	5.23	6.55	21.64	12.95	17.52	7.87	6.03	15.58	14.1
Merged-chr17-64723397-3	chr17	64723305	64723505	+	854.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	Lx8|LINE|L1	-43706.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	11.71	7.04	31.95	10.86	27.82	16.62	40.19	42.79	12.59	13.05	12.56	9.08
Merged-chr6-56808835-3	chr6	56808725	56808925	+	854.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11012.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	11.71	10.31	14.26	12.07	11.86	22.58	4.32	16.21	14.95	15.06	24.62	8.46
Merged-chr13-45977100-3	chr13	45977016	45977216	+	854.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12125.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	10.9	12.32	13.12	11.26	14.32	18.5	1.0	10.57	20.85	8.03	14.07	8.77
Merged-chr11-82561742-3	chr11	82561640	82561840	+	854.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-71613.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	8.88	10.06	14.83	11.66	12.68	12.54	7.31	9.93	14.55	15.57	14.57	9.71
Merged-chr10-79975283-3	chr10	79975183	79975383	+	854.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130455, intron 3 of 8)	intron (NM_130455, intron 3 of 8)	4559.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	18.98	12.07	13.69	6.03	13.09	18.81	19.6	6.25	18.1	15.06	18.09	8.77
Merged-chr2-152335550-3	chr2	152335454	152335654	+	854.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2915.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	12.11	11.57	8.56	8.45	18.41	8.15	9.63	10.09	14.75	8.54	27.64	8.14
Merged-chr12-100925751-3	chr12	100925661	100925861	+	854.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17563.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	15.34	5.03	9.7	12.47	27.41	12.23	12.95	21.08	17.7	15.57	14.57	18.17
Merged-chr7-31059307-2	chr7	31059224	31059424	+	854.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-611.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	3.63	10.56	10.27	7.24	15.14	15.05	14.95	12.42	7.08	4.52	9.04	8.46
Merged-chr19-17348068-3	chr19	17347974	17348174	+	854.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-8569.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	16.96	17.1	9.13	39.42	21.27	16.31	10.3	17.58	28.72	10.54	22.61	10.65
Merged-chr3-97238675-3	chr3	97238575	97238775	+	854.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-11311.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	12.52	9.81	18.25	8.45	9.82	11.92	7.97	14.05	16.52	19.08	15.58	17.86
Merged-chr4-136180157-3	chr4	136180051	136180251	+	854.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-631.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	10.5	11.82	8.56	11.26	11.86	24.15	5.65	10.88	22.62	27.11	25.63	13.16
Merged-chr12-24492722-3	chr12	24492631	24492831	+	854.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5850.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	12.11	13.33	10.27	12.07	15.55	13.8	20.26	13.71	9.44	14.06	31.15	15.98
Merged-chr5-21036310-3	chr5	21036214	21036414	+	854.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	RSINE1|SINE|B4	-1067.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	19.79	13.83	11.98	10.86	15.55	24.77	7.31	16.88	27.93	18.58	48.24	8.77
Merged-chr11-94753132-2	chr11	94753021	94753221	+	854.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8061.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	10.9	5.53	3.99	2.41	6.95	10.03	3.65	13.71	16.92	14.06	8.04	15.66
Merged-chr2-167348082-3	chr2	167347986	167348186	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1092.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.27	7.29	7.99	10.05	17.59	12.54	15.94	13.77	19.08	13.05	19.09	13.78
Merged-chr1-156264163-3	chr1	156264068	156264268	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134741, intron 14 of 17)	ORR1F|LTR|ERVL-MaLR	39180.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	2.83	10.31	17.68	9.65	12.68	18.5	4.32	9.98	14.75	17.07	18.59	15.04
Merged-chr19-35126827-3	chr19	35126709	35126909	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161413.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	10.9	12.58	21.68	15.28	13.91	15.05	6.64	11.36	9.64	2.01	25.12	7.52
Merged-chr19-29824508-3	chr19	29824405	29824605	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11531.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	5.65	8.3	7.42	17.7	11.45	11.92	7.64	11.52	10.82	7.03	15.07	11.9
Merged-chr11-60536618-3	chr11	60536508	60536708	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1075.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	19.79	9.56	4.56	6.44	14.73	20.07	13.95	10.65	28.72	11.55	14.57	16.29
Merged-chr5-112279569-3	chr5	112279462	112279662	+	854.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	2871.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	16.15	12.58	21.11	4.42	12.68	29.48	5.98	7.6	18.69	19.08	10.55	7.21
Merged-chr9-108203197-3	chr9	108203105	108203305	+	854.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12822.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	22.21	20.63	12.55	9.65	7.77	20.7	9.3	9.14	22.42	20.59	19.6	12.84
Merged-chr10-96266417-3	chr10	96266306	96266506	+	854.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40199.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	11.71	18.11	14.83	8.04	21.27	15.05	14.28	12.08	19.67	8.03	14.07	10.34
Merged-chr10-20507264-3	chr10	20507172	20507372	+	854.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	41056.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	11.31	16.85	7.99	4.02	20.05	10.66	10.63	18.06	12.59	11.05	18.09	5.64
Merged-chr10-80918160-4	chr10	80918048	80918248	+	854.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010722)	promoter-TSS (NM_010722)	97.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	6.86	12.32	8.56	4.02	4.09	4.39	6.64	6.98	15.93	9.54	11.05	8.14
Merged-chr8-111642678-3	chr8	111642539	111642739	+	854.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	-804.0	NM_001037665	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	13.33	18.36	11.41	6.84	21.68	21.64	8.64	12.39	9.24	20.08	15.07	6.89
Merged-chr17-36836303-3	chr17	36836215	36836415	+	854.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-831.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	30.28	31.69	18.25	13.67	3.27	5.64	3.32	4.71	32.06	31.63	25.12	14.72
Merged-chr10-94372884-3	chr10	94372772	94372972	+	854.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	16.15	8.05	7.99	14.88	18.82	23.83	11.63	28.85	13.96	20.59	17.59	10.65
Merged-chr18-78808071-3	chr18	78807958	78808158	+	854.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-211108.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	6.46	6.54	14.26	10.46	11.86	11.29	10.3	12.95	16.52	8.54	25.63	5.64
Merged-chr6-4978472-3	chr6	4978367	4978567	+	854.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75147.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	10.5	7.55	13.69	5.63	11.45	8.47	11.63	20.36	21.05	6.03	15.07	9.71
Merged-chr19-5945184-3	chr19	5945054	5945254	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	19052.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	9.29	12.32	20.54	17.29	31.09	32.3	23.58	23.58	6.69	9.54	10.05	5.33
Merged-chr17-10566682-1	chr17	10566582	10566782	+	854.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	110466.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.63	3.02	4.56	2.82	10.64	5.02	8.64	13.04	7.08	3.01	7.03	2.82
Merged-chr10-80900366-3	chr10	80900303	80900503	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010722)	TTS (NM_010722)	566.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	15.34	17.36	7.42	10.46	15.55	16.93	8.64	11.64	25.77	23.6	22.11	23.81
Merged-chr8-70131721-3	chr8	70131611	70131811	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011266, exon 9 of 9)	3' UTR (NM_011266, exon 9 of 9)	384.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	20.19	14.84	11.98	10.86	9.82	8.47	9.97	7.74	27.73	17.07	25.63	14.41
Merged-chr13-81761925-1	chr13	81761825	81762025	+	854.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21322.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.25	7.29	3.42	6.84	6.55	6.27	6.64	10.26	8.06	8.54	7.54	5.01
Merged-chr10-117792298-1	chr10	117792198	117792398	+	854.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134010, intron 1 of 27)	CpG	407.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	9.69	7.04	6.28	5.23	9.82	21.95	13.29	7.68	9.05	18.08	14.07	10.02
Merged-chr5-99985034-3	chr5	99984891	99985091	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6053.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	8.48	10.82	9.7	11.66	13.91	7.21	12.62	14.61	8.65	15.57	13.06	9.4
Merged-chr10-95703170-4	chr10	95703113	95703313	+	854.636902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139067.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	2.42	2.01	1.71	5.23	13.09	5.33	11.96	5.64	8.26	6.03	8.54	3.76
Merged-chr16-81324671-3	chr16	81324582	81324782	+	854.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 1 of 17)	MTE2b|LTR|ERVL-MaLR	123985.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	8.08	4.02	12.55	14.88	6.95	6.9	9.63	18.93	13.96	21.09	21.61	17.54
Merged-chr15-91168193-3	chr15	91168069	91168269	+	854.611145	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	23838.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.02	2.77	2.28	2.41	4.91	10.98	6.98	9.28	10.03	7.03	2.51	5.33
Merged-chr16-33885104-3	chr16	33885045	33885245	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	55480.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	14.13	9.06	6.85	14.08	8.18	8.15	9.3	12.14	8.85	5.02	11.05	9.08
Merged-chr11-100611889-3	chr11	100611791	100611991	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	8277.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	12.11	6.04	25.67	20.91	12.27	9.72	9.63	12.76	11.01	10.54	21.61	5.01
Merged-chr5-124424888-3	chr5	124424790	124424990	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081203, intron 1 of 31)	CpG	712.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	10.9	23.39	12.55	9.65	13.91	18.19	12.62	6.48	17.9	25.61	14.07	10.96
Merged-chr12-85372463-3	chr12	85372338	85372538	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	2279.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	12.52	7.29	17.68	8.45	18.82	15.05	8.3	10.65	13.96	14.56	26.13	7.83
Merged-chr1-84002844-1	chr1	84002744	84002944	+	854.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	216117.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	3.63	2.52	6.85	4.42	8.59	11.6	14.28	23.78	6.29	5.02	9.55	3.13
Merged-chr10-79824571-2	chr10	79824458	79824658	+	854.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3537.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	6.86	14.84	7.99	4.02	16.36	10.35	3.99	10.71	15.14	10.04	18.59	7.52
Merged-chr1-89876827-3	chr1	89876727	89876927	+	854.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 15 of 16)	intron (NM_001037136, intron 15 of 16)	54349.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	15.75	5.28	6.28	13.67	9.0	12.86	8.64	25.09	9.83	7.03	11.56	6.27
Merged-chr6-114659704-3	chr6	114659611	114659811	+	854.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	16614.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.85	7.55	18.83	11.26	14.73	18.81	13.29	16.32	10.62	10.54	19.6	11.59
Merged-chr12-91660818-3	chr12	91660706	91660906	+	854.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-70319.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	9.69	8.3	11.98	14.48	7.77	10.66	17.61	13.85	15.74	14.06	20.1	4.7
Merged-chr17-5589155-3	chr17	5589066	5589266	+	854.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	96566.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.44	11.32	11.41	9.25	19.64	12.23	13.29	13.18	16.72	18.08	15.58	11.59
Merged-chr11-117663636-3	chr11	117663550	117663750	+	854.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	9361.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	18.57	15.59	13.69	19.71	13.09	23.2	6.31	12.45	28.52	15.57	12.56	12.22
Merged-chr17-70958423-1	chr17	70958323	70958523	+	854.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	32093.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.85	2.26	4.56	4.02	9.82	4.7	2.99	2.24	18.29	10.54	18.59	12.22
Merged-chr3-88082874-3	chr3	88082756	88082956	+	854.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	805.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	19.79	9.06	9.7	10.86	8.18	25.09	5.98	10.15	15.34	7.03	14.07	4.7
Merged-chr19-32176140-1	chr19	32176040	32176240	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	34873.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.63	5.79	2.28	4.42	3.27	21.95	6.31	11.19	1.57	5.52	6.03	4.7
Merged-chr12-25242586-2	chr12	25242493	25242693	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113419.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.62	5.53	10.27	4.02	8.18	8.47	6.31	6.62	18.49	8.54	20.1	14.41
Merged-chr3-85604551-3	chr3	85604423	85604623	+	854.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144896, exon 4 of 13)	exon (NM_144896, exon 4 of 13)	30394.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	8.08	5.79	25.67	12.07	5.32	4.08	6.64	9.81	7.08	6.03	16.08	7.83
Merged-chr16-59610899-2	chr16	59610812	59611012	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-26033.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	4.85	3.02	3.42	9.65	7.36	3.14	4.32	9.14	27.34	47.7	25.12	18.8
Merged-chr6-94254184-1	chr6	94254084	94254284	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-16742.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.81	0.0	1.71	0.4	2.45	9.41	5.98	9.06	1.18	0.5	1.0	0.63
Merged-chr4-139288259-1	chr4	139288159	139288359	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009798, intron 8 of 8)	intron (NM_009798, intron 8 of 8)	22449.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	7.67	3.27	8.56	6.84	5.73	6.27	13.29	9.42	5.11	3.51	5.02	1.57
Merged-chr17-22424877-1	chr17	22424777	22424977	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	675.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	6.86	5.53	0.57	3.22	10.64	7.53	2.66	7.74	7.08	6.53	8.54	4.7
Merged-chr4-62208522-3	chr4	62208422	62208622	+	854.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290353)	promoter-TSS (NM_001290353)	24.0	NM_001290351	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	12.52	16.35	20.54	14.08	24.14	24.77	21.92	31.23	8.06	8.54	11.56	12.53
Merged-chr6-142339165-3	chr6	142339090	142339290	+	854.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6507.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	7.27	7.8	7.99	9.25	8.59	13.8	10.63	6.28	24.0	16.07	20.6	12.53
Merged-chr16-55509977-3	chr16	55509869	55510069	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	15238.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	17.36	10.82	14.83	6.44	4.09	15.37	8.3	1.88	32.45	24.1	12.06	3.76
Merged-chr12-85480810-3	chr12	85480693	85480893	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6903.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	16.56	9.56	10.27	9.65	12.27	18.5	6.64	3.36	11.6	7.53	3.01	12.22
Merged-chr6-136721238-3	chr6	136721142	136721342	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 16 of 25)	B4A|SINE|B4	-59349.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	8.88	9.31	14.26	5.63	6.95	9.72	7.64	9.14	14.55	11.55	20.1	10.02
Merged-chr1-186584074-3	chr1	186583982	186584182	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25401.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	12.11	8.8	19.97	9.25	14.73	9.72	10.3	21.73	13.96	12.55	30.65	14.1
Merged-chr9-95557518-3	chr9	95557418	95557618	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2299.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	24.63	10.56	15.4	11.66	20.46	28.22	18.93	15.22	27.34	15.06	12.06	7.21
Merged-chr5-65722708-3	chr5	65722605	65722805	+	854.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-24849.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	6.46	10.82	15.4	8.85	6.95	15.37	9.63	4.46	17.7	22.09	9.55	7.52
Merged-chr16-3956629-1	chr16	3956529	3956729	+	854.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081280, intron 7 of 17)	RMER19B|LTR|ERVK	20003.0	NM_175547	268857.0	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	2.02	4.28	5.7	2.01	7.36	10.03	7.64	9.87	3.93	3.51	2.51	2.19
Merged-chr2-102839306-1	chr2	102839206	102839406	+	854.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 6 of 13)	intron (NM_001039150, intron 6 of 13)	62359.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.5	0.0	2.01	16.36	10.35	7.64	13.04	9.44	7.53	2.01	2.82
Merged-chr2-120098052-2	chr2	120097956	120098156	+	854.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	56519.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	2.02	1.01	4.56	9.65	17.18	4.7	7.97	16.65	14.75	8.54	42.21	23.81
Merged-chr14-21299944-3	chr14	21299846	21300046	+	854.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-199824.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	16.56	11.32	22.82	31.77	13.09	8.78	25.58	31.12	8.85	5.02	13.57	17.23
Merged-chr9-95559425-4	chr9	95559308	95559508	+	854.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198414)	promoter-TSS (NM_198414)	-409.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.67	9.56	3.99	28.56	22.09	15.68	26.57	18.31	16.92	16.57	15.58	13.78
Merged-chr6-101552330-3	chr6	101552239	101552439	+	854.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-174442.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	6.46	6.79	9.7	3.22	17.59	24.77	23.25	18.5	23.41	33.64	38.19	13.78
Merged-chr8-45934904-2	chr8	45934814	45935014	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033246, intron 1 of 6)	intron (NM_001033246, intron 1 of 6)	265.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	8.48	5.79	8.56	5.63	14.32	14.11	10.96	14.92	10.03	13.05	21.61	9.71
Merged-chr19-18595044-1	chr19	18594944	18595144	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36769.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	2.26	6.85	7.24	5.73	12.86	6.98	12.95	1.77	2.51	7.03	3.76
Merged-chr2-118601417-1	chr2	118601317	118601517	+	854.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3206.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	1.21	1.51	1.71	0.0	2.45	2.2	6.64	0.73	13.77	13.05	14.07	5.01
Merged-chr10-89695489-1	chr10	89695389	89695589	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	9126.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	3.23	5.03	6.85	4.02	4.91	8.47	11.63	7.96	1.57	3.01	4.02	4.7
Merged-chr3-41463160-1	chr3	41463060	41463260	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30039.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.46	1.01	4.56	4.02	5.73	5.02	4.98	10.96	0.39	1.0	3.01	3.76
Merged-chr17-46388436-2	chr17	46388328	46388528	+	854.31665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021346, intron 2 of 7)	intron (NM_021346, intron 2 of 7)	4662.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	4.85	7.8	12.55	4.02	14.32	21.95	9.3	15.81	16.33	12.05	18.09	7.52
Merged-chr14-19986215-3	chr14	19986086	19986286	+	854.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8937.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	10.09	8.05	15.97	16.49	12.68	9.41	6.98	10.82	11.6	8.54	9.04	9.4
Merged-chr10-121351398-3	chr10	121351269	121351469	+	854.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361015, exon 1 of 13)	exon (NM_001361015, exon 1 of 13)	275.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	6.06	11.32	9.13	9.65	17.18	19.13	15.61	10.85	20.65	11.55	12.06	9.4
Merged-chr6-29263772-3	chr6	29263682	29263882	+	854.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8706.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	7.67	9.06	12.55	7.64	7.77	12.54	10.63	18.67	33.44	18.58	32.66	13.16
Merged-chr14-30763139-3	chr14	30763037	30763237	+	854.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	MTD|LTR|ERVL-MaLR	47522.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	18.57	15.09	12.55	14.88	17.18	14.11	23.58	25.74	12.0	7.53	11.05	12.22
Merged-chr12-52284429-2	chr12	52284343	52284543	+	854.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	186697.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.81	2.52	10.27	5.23	2.86	2.2	9.3	11.41	11.01	9.04	13.06	5.33
Merged-chr5-90777792-2	chr5	90777696	90777896	+	854.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5361.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	8.48	5.03	6.85	6.44	25.77	11.29	19.93	17.27	11.21	9.04	18.09	4.07
Merged-chr4-109119807-3	chr4	109119716	109119916	+	854.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	MTD|LTR|ERVL-MaLR	-1780.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	12.11	10.56	8.56	14.48	13.5	10.98	6.98	8.41	22.62	11.05	15.58	15.66
Merged-chr14-102795909-3	chr14	102795822	102796022	+	854.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186710.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	9.69	12.83	27.38	18.1	16.77	15.68	17.27	17.38	10.03	10.54	24.12	16.92
Merged-chr16-16856910-3	chr16	16856837	16857037	+	854.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A|LTR|ERVK	7048.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	6.46	11.57	7.42	8.04	9.82	8.15	8.97	12.39	20.26	24.6	21.61	12.22
Merged-chr11-77508239-3	chr11	77508134	77508334	+	854.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001004144)	TTS (NM_001004144)	5039.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	9.29	11.32	5.13	10.05	14.73	13.48	2.99	14.72	20.06	17.07	19.09	10.65
Merged-chr5-123153041-2	chr5	123152941	123153141	+	854.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 7 of 16)	MER3|DNA|hAT-Charlie	10848.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	6.46	2.52	15.4	7.24	11.86	9.41	2.99	8.36	12.39	6.03	11.56	8.77
Merged-chr7-127849303-2	chr7	127849205	127849405	+	854.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009294)	TTS (NM_009294)	7497.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	5.25	5.28	7.42	0.8	5.73	20.38	12.95	12.28	9.05	8.54	9.55	10.02
Merged-chr2-29200055-2	chr2	29199970	29200170	+	854.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305805, intron 4 of 7)	intron (NM_001305805, intron 4 of 7)	48029.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	9.29	2.77	4.56	2.82	13.5	10.98	5.65	6.36	9.24	19.08	18.59	6.27
Merged-chr12-112593430-3	chr12	112593312	112593512	+	854.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	4628.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	24.23	11.82	23.39	20.91	4.91	10.35	7.64	13.18	8.46	8.54	9.55	7.52
Merged-chr11-116028486-3	chr11	116028341	116028541	+	854.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1875.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	11.71	7.55	6.85	9.25	14.32	22.58	4.98	7.18	14.36	16.07	18.59	10.02
Merged-chr2-180043881-3	chr2	180043778	180043978	+	854.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1395.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	10.09	5.28	10.84	17.29	20.46	13.48	8.97	12.84	13.37	7.53	14.57	13.78
Merged-chr10-67646838-3	chr10	67646746	67646946	+	854.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74887.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	10.9	13.33	5.13	5.63	10.64	10.98	6.98	13.74	16.52	14.56	11.56	12.22
Merged-chr7-30051378-3	chr7	30051290	30051490	+	854.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178733)	promoter-TSS (NM_178733)	6.0	NM_011748	243906.0	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	11.31	9.06	9.7	3.22	20.46	13.8	7.31	9.5	18.1	24.1	35.17	10.02
Merged-chr3-152406551-7	chr3	152406455	152406655	+	854.0872800000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	9871.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	8.88	3.02	3.42	9.25	9.41	5.96	7.64	10.93	14.36	11.55	9.55	5.95
Merged-chr14-70541163-2	chr14	70541071	70541271	+	854.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4080.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	9.69	17.36	7.42	14.08	13.09	17.87	5.98	13.91	3.54	2.01	5.02	3.76
Merged-chr5-31602598-3	chr5	31602513	31602713	+	854.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11338.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	9.29	11.07	17.68	8.04	36.0	47.66	36.21	45.9	8.85	22.59	35.68	18.17
Merged-chr8-95427796-3	chr8	95427679	95427879	+	854.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	7090.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	8.08	16.1	6.28	13.67	14.32	12.54	7.97	16.15	16.72	8.54	24.12	8.77
Merged-chr6-4903642-2	chr6	4903537	4903737	+	854.0714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 1 of 15)	CpG	317.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	8.88	10.56	3.42	12.47	8.59	9.09	6.31	12.93	9.44	10.04	10.55	5.33
Merged-chr1-156537940-3	chr1	156537797	156537997	+	854.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20890.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	10.5	7.29	7.42	16.49	5.73	8.47	13.95	11.44	13.18	10.04	12.56	10.34
Merged-chr17-56251642-3	chr17	56251552	56251752	+	854.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5141.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	14.54	21.88	10.84	6.44	17.18	29.79	4.32	8.02	16.52	16.57	11.05	9.08
Merged-chr15-66823151-2	chr15	66823048	66823248	+	854.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	8681.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	13.73	8.55	10.84	18.1	7.36	9.72	16.28	14.94	6.49	5.52	11.05	4.39
Merged-chr4-43419146-3	chr4	43419027	43419227	+	854.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 2 of 11)	ID_B1|SINE|B4	10007.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	14.13	15.85	16.54	11.26	12.68	6.27	12.29	11.24	7.67	12.55	22.11	7.83
Merged-chr2-58715087-3	chr2	58714972	58715172	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	L1MA4A|LINE|L1	-40112.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	13.73	15.59	10.84	7.24	5.73	15.99	6.31	10.79	14.95	15.06	18.59	2.19
Merged-chr4-120954556-1	chr4	120954456	120954656	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2855.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	5.65	4.78	5.7	3.62	9.41	14.42	5.98	10.12	1.18	5.02	1.51	1.57
Merged-chr1-149923852-1	chr1	149923752	149923952	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 2 of 17)	intron (NM_008869, intron 2 of 17)	-1413.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	1.21	1.01	5.7	5.23	7.77	4.7	6.98	9.73	4.92	5.52	8.54	2.19
Merged-chr5-114697679-1	chr5	114697579	114697779	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-6744.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	2.83	6.54	3.99	2.41	4.91	3.76	4.32	2.3	0.79	0.5	0.0	1.25
Merged-chr2-48001985-1	chr2	48001885	48002085	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-812124.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.04	1.51	2.85	4.02	5.32	9.41	1.33	7.29	10.62	1.0	9.55	6.58
Merged-chr1-43868608-1	chr1	43868508	43868708	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40900.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	1.62	1.51	3.99	0.4	1.23	1.57	4.65	5.44	2.16	1.0	1.0	1.88
Merged-chr2-74606290-1	chr2	74606190	74606390	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-27342.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	2.02	0.0	6.85	2.41	1.23	2.2	8.64	7.32	1.18	2.01	7.03	1.88
Merged-chr2-167222342-3	chr2	167222285	167222485	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 4 of 9)	intron (NM_008968, intron 4 of 9)	18152.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	12.92	8.8	4.56	4.83	7.36	8.47	1.99	9.62	16.13	10.04	12.56	3.13
Merged-chr13-41466377-2	chr13	41466277	41466477	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20983.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.67	4.53	10.84	6.44	16.77	21.01	20.59	29.02	13.18	16.57	12.56	7.52
Merged-chr7-59248680-1	chr7	59248580	59248780	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011668, intron 4 of 12)	L1MB2|LINE|L1	19930.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.0	0.5	0.0	1.61	8.18	2.82	3.99	8.69	0.2	3.01	1.0	0.0
Merged-chr14-8002852-1	chr14	8002752	8002952	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001331065)	promoter-TSS (NM_001331065)	-36.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	6.86	5.79	4.56	5.63	15.55	5.02	11.29	3.28	7.08	7.03	11.56	7.52
Merged-chr12-85600531-1	chr12	85600431	85600631	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	513.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	9.29	4.53	2.85	5.23	6.95	7.84	4.98	7.12	9.44	8.03	11.05	6.89
Merged-chr13-112674258-1	chr13	112674158	112674358	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	13492.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	4.44	6.04	9.13	14.88	3.27	2.51	4.32	6.08	17.11	14.06	12.56	11.28
Merged-chr14-17539523-1	chr14	17539423	17539623	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121437.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.42	1.76	0.0	1.61	8.18	4.39	4.32	13.46	4.52	0.5	4.52	10.96
Merged-chr4-123423528-1	chr4	123423428	123423628	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11617.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.4	2.01	3.99	7.24	1.64	3.45	8.64	7.88	7.08	3.01	16.58	2.51
Merged-chr12-76813743-1	chr12	76813643	76813843	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134050, intron 1 of 6)	intron (NM_134050, intron 1 of 6)	113.0	NM_001347405	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	5.65	2.01	7.99	2.41	5.32	1.57	7.64	8.02	6.49	1.51	8.04	6.27
Merged-chr3-45378363-1	chr3	45378263	45378463	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001098172)	promoter-TSS (NM_001098172)	-35.0	NM_001098172	18526.0	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding	0.81	1.26	1.14	8.04	4.5	3.45	8.3	5.97	0.79	1.51	4.52	4.07
Merged-chr3-95676589-1	chr3	95676489	95676689	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_144899, exon 18 of 18)	3' UTR (NM_144899, exon 18 of 18)	11328.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	4.04	4.78	6.28	1.61	7.36	10.66	2.99	6.39	4.72	6.53	0.0	10.96
Merged-chr2-17788427-1	chr2	17788327	17788527	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57359.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	3.23	2.77	7.42	4.02	4.91	5.02	8.64	7.04	2.36	7.03	3.01	2.82
Merged-chr2-83676675-1	chr2	83676575	83676775	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32097.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	2.02	5.53	1.14	4.83	7.36	7.84	7.97	12.81	0.39	0.0	0.0	0.0
Merged-chr2-165926459-1	chr2	165926359	165926559	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-41621.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.23	2.52	5.7	4.83	8.59	9.41	2.99	9.2	2.16	1.0	2.51	4.7
Merged-chr10-8881392-1	chr10	8881292	8881492	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	ID_B1|SINE|B4	4678.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.46	15.34	6.28	6.44	15.14	21.32	14.28	11.3	14.16	17.57	13.57	18.17
Merged-chr18-10052404-1	chr18	10052304	10052504	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22255.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	4.04	5.53	2.85	0.8	12.68	5.02	14.28	2.02	4.52	6.03	8.54	4.39
Merged-chr12-102371231-1	chr12	102371131	102371331	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68582.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.25	4.28	3.99	10.86	11.86	7.53	7.31	16.88	6.69	5.52	5.02	6.27
Merged-chr8-22806685-3	chr8	22806588	22806788	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-1034.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	10.5	5.28	10.27	3.62	9.82	7.84	5.98	8.69	19.87	19.08	18.09	13.47
Merged-chr7-19202642-1	chr7	19202542	19202742	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347582, intron 19 of 21)	intron (NM_001347582, intron 19 of 21)	-9896.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	8.88	5.28	5.13	0.4	1.64	8.15	1.66	2.36	14.75	16.57	9.04	3.13
Merged-chr10-94515314-2	chr10	94515217	94515417	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	CpG	460.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	14.94	13.58	5.7	8.85	10.64	11.6	17.61	15.95	6.69	7.53	18.09	11.59
Merged-chr2-129626069-3	chr2	129625965	129626165	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	30603.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.27	5.03	11.98	17.29	14.73	11.29	4.65	13.01	11.8	9.04	33.16	10.65
Merged-chr14-50998574-1	chr14	50998474	50998674	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9177.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.4	2.01	1.14	6.03	4.09	1.88	0.33	4.51	16.33	1.51	11.05	8.14
Merged-chr19-8980966-3	chr19	8980868	8981068	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8316.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	8.08	7.55	11.41	10.46	21.68	14.74	13.29	11.19	22.82	20.08	38.69	6.58
Merged-chr1-23380646-1	chr1	23380546	23380746	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	L2|LINE|L2	2529.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	10.5	19.12	6.28	10.86	18.0	10.35	16.28	14.44	15.14	25.11	16.08	11.59
Merged-chr11-48776853-1	chr11	48776753	48776953	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23507.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	6.86	7.8	1.14	1.61	5.73	11.29	1.33	7.21	4.92	7.53	6.53	6.89
Merged-chr3-15848580-3	chr3	15848470	15848670	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173459)	promoter-TSS (NM_001173459)	-83.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	11.71	9.81	13.12	8.04	12.68	21.95	18.6	21.39	34.42	33.14	36.18	19.74
Merged-chr6-52411413-3	chr6	52411317	52411517	+	853.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81034.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	8.48	16.6	15.4	8.04	6.14	21.01	16.61	13.26	16.33	17.57	12.56	4.07
Merged-chr6-136930948-3	chr6	136930830	136931030	+	853.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301308, intron 2 of 4)	intron (NM_001301308, intron 2 of 4)	8597.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	7.67	9.56	13.12	14.48	14.32	9.72	12.29	15.25	27.93	12.05	32.66	15.35
Merged-chr14-61799442-3	chr14	61799357	61799557	+	853.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117084.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	13.33	10.56	27.38	27.75	10.23	13.48	10.3	20.44	15.34	8.03	18.59	14.41
Merged-chr9-104764100-2	chr9	104763993	104764193	+	853.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	GA-rich|Low_complexity|Low_complexity	194610.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	9.29	5.79	19.4	14.48	19.64	10.98	8.64	14.89	1.57	3.01	1.51	0.63
Merged-chr5-99202897-5	chr5	99202790	99202990	+	853.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50037.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	13.73	8.3	2.28	8.04	16.36	8.15	2.66	3.73	7.87	10.04	10.05	6.89
Merged-chr18-37984489-3	chr18	37984384	37984584	+	853.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139206, intron 18 of 32)	intron (NM_139206, intron 18 of 32)	6461.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	15.34	5.28	8.56	16.49	20.86	10.66	4.32	11.02	19.87	14.06	18.59	12.22
Merged-chr7-114117098-3	chr7	114116998	114117198	+	853.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	CpG	683.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	8.48	13.83	19.97	16.09	18.82	31.67	27.24	25.09	13.96	3.01	15.07	13.78
Merged-chr11-8610662-3	chr11	8610584	8610784	+	853.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53851.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.86	5.79	8.56	15.28	9.0	12.86	6.64	14.64	15.74	12.55	18.59	13.47
Merged-chr9-57439717-2	chr9	57439622	57439822	+	853.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357913)	promoter-TSS (NM_001357913)	14.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	8.88	4.28	11.41	9.65	15.14	10.98	9.97	7.82	17.9	10.54	11.56	12.84
Merged-chr11-69368866-3	chr11	69368829	69369029	+	853.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	CpG	497.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	8.48	7.04	4.56	5.23	15.96	5.96	2.66	8.24	14.75	14.56	14.07	11.9
Merged-chr14-65097982-5	chr14	65097802	65098002	+	853.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018788, intron 1 of 6)	CpG	204.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	11.31	15.85	18.83	11.26	8.59	6.59	9.63	13.18	11.8	11.05	12.06	8.14
Merged-chr15-99126521-5	chr15	99126424	99126624	+	853.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139140)	promoter-TSS (NM_139140)	-321.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	1.26	0.0	0.4	13.09	14.42	5.98	4.51	11.8	27.62	5.02	8.14
Merged-chr17-47328971-3	chr17	47328849	47329049	+	853.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 13 of 19)	intron (NM_001097623, intron 13 of 19)	-39938.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	17.77	10.82	4.56	4.83	11.05	19.13	7.31	5.27	16.72	5.02	13.57	4.39
Merged-chr9-96554759-3	chr9	96554661	96554861	+	853.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 17 of 23)	intron (NM_053268, intron 17 of 23)	-76086.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	9.29	10.06	14.26	14.88	10.64	9.72	5.98	11.55	18.49	1.51	18.09	10.34
Merged-chr9-89200524-3	chr9	89200439	89200639	+	853.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	1266.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	9.69	9.31	11.98	14.88	13.09	15.99	11.29	3.14	10.82	19.08	13.57	4.39
Merged-chr12-86078605-3	chr12	86078502	86078702	+	853.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009368, exon 1 of 7)	5' UTR (NM_009368, exon 1 of 7)	439.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	10.5	11.32	27.38	9.25	11.86	17.56	5.65	12.84	35.6	12.55	35.17	18.8
Merged-chr2-157204656-6	chr2	157204521	157204721	+	853.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	-87.0	NM_001139516	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	18.57	18.61	6.28	8.04	9.82	6.9	10.96	5.13	6.88	13.56	12.06	11.28
Merged-chr5-105662835-1	chr5	105662735	105662935	+	853.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-37134.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.04	3.77	1.14	8.04	6.95	10.03	10.63	16.68	1.77	0.0	0.5	3.45
Merged-chr19-45574052-2	chr19	45573934	45574134	+	853.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	13449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	10.9	9.31	13.69	8.04	9.0	12.23	3.99	6.84	12.78	4.52	7.54	5.95
Merged-chr14-61046543-2	chr14	61046448	61046648	+	853.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013869, exon 1 of 10)	5' UTR (NM_013869, exon 1 of 10)	307.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	8.88	3.77	14.83	1.21	6.95	8.15	12.62	10.71	16.72	17.57	17.08	14.41
Merged-chr11-43729091-3	chr11	43728984	43729184	+	853.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133795)	TTS (NM_133795)	18889.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	14.94	16.1	10.84	12.07	18.41	16.62	18.27	29.3	11.21	14.06	9.55	7.83
Merged-chr17-51408550-3	chr17	51408462	51408662	+	853.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	39707.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	6.06	6.54	6.28	8.85	12.68	12.86	5.65	11.33	18.88	12.05	18.09	9.71
Merged-chr19-41313911-3	chr19	41313801	41314001	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-49897.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	10.09	7.55	15.4	14.48	16.77	15.99	7.64	18.34	20.26	8.54	27.64	7.52
Merged-chr7-101821756-3	chr7	101821661	101821861	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001122739)	TTS (NM_001122739)	3448.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	10.9	11.82	2.28	4.42	10.23	12.86	10.63	9.17	9.64	11.05	4.02	9.4
Merged-chr10-67620203-3	chr10	67620112	67620312	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-48253.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	13.73	7.8	16.54	8.04	9.41	12.23	7.97	15.48	19.47	6.53	31.66	10.34
Merged-chr7-98803397-3	chr7	98803292	98803492	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31720.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	10.5	4.78	3.99	14.08	13.91	13.8	12.29	13.21	10.23	19.58	12.56	8.77
Merged-chr10-21855489-3	chr10	21855368	21855568	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26716.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.04	3.02	13.69	11.66	21.68	17.56	37.2	28.01	21.05	14.56	15.07	7.52
Merged-chr18-36285170-1	chr18	36285070	36285270	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	4008.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	2.42	1.76	6.28	6.44	2.05	2.82	8.97	6.53	5.31	4.52	2.51	5.95
Merged-chr6-32570054-1	chr6	32569954	32570154	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18138.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	6.46	3.52	1.71	6.44	4.09	12.23	6.64	8.66	7.87	5.02	2.51	1.25
Merged-chr2-84602398-1	chr2	84602298	84602498	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47082.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.63	4.78	1.71	11.66	9.0	3.14	8.3	7.88	7.08	8.54	8.54	9.71
Merged-chr17-71310169-1	chr17	71310069	71310269	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357336, exon 2 of 8)	exon (NM_001357336, exon 2 of 8)	842.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.23	4.78	0.0	7.64	12.27	1.25	5.65	8.1	2.75	3.01	5.02	4.7
Merged-chr14-101542579-3	chr14	101542481	101542681	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	66610.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	12.52	9.56	10.27	20.91	13.09	4.08	15.94	19.29	13.57	10.54	15.58	9.4
Merged-chr6-39243603-1	chr6	39243503	39243703	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36830.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.81	1.51	1.14	2.82	10.64	1.88	7.97	12.34	5.7	7.03	3.01	2.82
Merged-chr8-94923622-2	chr8	94923530	94923730	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145972)	promoter-TSS (NM_001145972)	-64.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	14.94	11.82	10.27	15.69	9.41	12.23	6.98	9.81	4.92	5.02	4.52	2.19
Merged-chr6-15793712-3	chr6	15793593	15793793	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	73032.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	8.88	6.79	19.4	11.66	9.82	9.72	7.97	17.66	22.42	16.57	12.56	10.65
Merged-chr10-77713919-1	chr10	77713819	77714019	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287074, intron 1 of 11)	intron (NM_001287074, intron 1 of 11)	-1888.0	NM_001205035	100502921.0	Mm.486156	NM_001205035	ENSMUSG00000094146	Gm10142	-	predicted gene 10142	protein-coding	5.65	3.27	2.85	5.63	6.14	10.66	6.31	10.07	2.75	3.51	11.05	5.64
Merged-chr6-83637359-3	chr6	83637238	83637438	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18778.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.67	9.06	7.99	4.02	12.68	9.09	16.28	18.87	9.83	6.53	10.05	11.28
Merged-chr12-42181841-1	chr12	42181741	42181941	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-695784.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.42	1.51	1.14	0.8	9.41	14.74	8.3	20.94	5.31	0.0	6.53	1.88
Merged-chr14-62328603-3	chr14	62328498	62328698	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3470.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	14.54	16.1	13.12	7.24	14.32	6.9	11.29	14.52	8.85	15.06	14.57	13.16
Merged-chr17-71137236-3	chr17	71137149	71137349	+	853.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46283.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	14.13	8.8	12.55	11.66	11.45	18.81	12.62	19.18	15.14	10.04	22.61	13.47
Merged-chr16-57555130-3	chr16	57555013	57555213	+	853.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5871.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	23.42	7.55	23.39	6.03	25.77	26.03	18.6	20.33	13.57	16.07	17.08	9.4
Merged-chr9-88548033-3	chr9	88547914	88548114	+	853.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-6.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	9.69	8.3	9.13	8.04	16.36	13.48	8.97	10.54	15.34	15.57	28.64	9.71
Merged-chr5-18010559-3	chr5	18010462	18010662	+	853.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	47992.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	8.08	9.06	11.98	12.47	9.0	16.31	7.97	17.27	21.44	13.56	11.56	4.7
Merged-chr16-30504233-3	chr16	30504150	30504350	+	853.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR3|LTR|Gypsy	46328.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	10.09	10.56	4.56	6.44	8.18	20.7	3.32	7.77	20.26	14.06	13.06	10.02
Merged-chr9-67838908-2	chr9	67838799	67838999	+	853.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1497.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	12.52	5.03	13.69	10.86	25.77	14.11	12.62	15.62	9.64	5.52	9.55	5.95
Merged-chr6-145351456-3	chr6	145351322	145351522	+	853.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36203.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	7.67	8.55	6.28	14.48	12.68	8.78	16.28	11.3	11.8	10.54	9.55	12.53
Merged-chr1-171053565-3	chr1	171053450	171053650	+	853.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356511, intron 4 of 4)	intron (NM_001356511, intron 4 of 4)	5844.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	8.08	11.57	13.12	6.84	16.36	18.19	9.63	13.74	15.74	11.55	16.08	9.71
Merged-chr12-110458814-3	chr12	110458695	110458895	+	853.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135001, intron 2 of 13)	L1MA5A|LINE|L1	11616.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	10.9	4.53	7.99	6.44	17.59	10.66	20.26	13.18	11.21	8.03	14.07	17.23
Merged-chr5-102072249-3	chr5	102072159	102072359	+	853.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2338.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	11.31	9.06	13.12	18.5	23.32	19.44	20.59	23.52	14.75	13.05	11.05	12.22
Merged-chr8-106556335-2	chr8	106556241	106556441	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-30802.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	3.23	3.02	9.13	6.84	6.95	3.76	5.65	7.04	12.39	5.52	15.07	4.39
Merged-chr7-123465825-3	chr7	123465722	123465922	+	853.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007474, intron 4 of 5)	intron (NM_007474, intron 4 of 5)	3528.0	NM_001109045	11833.0	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	12.92	12.58	23.96	8.85	22.09	22.26	9.3	12.93	13.96	7.53	17.59	10.65
Merged-chr7-47081447-3	chr7	47081362	47081562	+	853.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	1762.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	16.15	7.29	10.84	11.26	8.59	10.03	9.3	14.92	19.47	27.62	16.58	19.42
Merged-chr17-74807534-1	chr17	74807434	74807634	+	853.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	89784.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.23	3.52	2.28	1.61	2.45	1.25	0.66	1.29	15.74	15.06	5.02	7.83
Merged-chr13-67831113-2	chr13	67831015	67831215	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045194)	promoter-TSS (NR_045194)	9.0	NM_001309374	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	0.81	3.52	7.99	4.02	2.86	6.9	4.98	2.64	31.08	25.61	24.12	15.66
Merged-chr6-137541413-1	chr6	137541313	137541513	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-21518.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	2.83	1.76	4.56	2.01	7.36	6.9	7.64	10.96	7.28	11.05	5.02	0.94
Merged-chr5-43360554-1	chr5	43360454	43360654	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125200.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.44	5.03	4.56	11.26	2.45	6.59	8.3	12.31	5.11	8.03	9.55	2.82
Merged-chr2-3349138-2	chr2	3349037	3349237	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	12969.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	3.23	9.31	2.28	2.41	6.95	6.9	5.31	5.5	13.18	5.52	15.07	5.95
Merged-chr16-76408381-3	chr16	76408278	76408478	+	853.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-34551.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	8.88	6.04	12.55	8.04	9.41	14.42	13.62	20.83	19.47	20.59	16.58	12.22
Merged-chr10-8072724-3	chr10	8072594	8072794	+	853.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31B|LTR|ERV1	-116571.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	10.09	11.57	11.41	21.72	13.91	8.78	6.64	11.94	12.19	14.56	13.06	11.9
Merged-chr5-140382869-3	chr5	140382756	140382956	+	853.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	6452.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	11.71	13.58	19.4	19.71	15.55	22.26	6.64	13.85	16.72	13.05	12.56	6.58
Merged-chr12-85342493-3	chr12	85342414	85342614	+	853.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-3152.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.46	6.79	25.67	7.64	12.27	2.51	9.3	8.55	38.16	23.1	61.81	44.8
Merged-chr4-119118996-3	chr4	119118902	119119102	+	853.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	10257.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	8.48	8.05	17.68	9.65	15.14	8.47	14.28	25.96	21.44	9.54	33.67	26.0
Merged-chr13-91509734-2	chr13	91509638	91509838	+	853.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48641.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	12.52	5.53	11.98	18.5	13.91	7.21	0.0	10.82	1.97	3.01	9.04	0.94
Merged-chr5-121845546-2	chr5	121845440	121845640	+	853.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3457.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	9.69	6.29	7.42	4.83	13.91	15.37	8.64	7.07	10.62	6.03	10.05	15.04
Merged-chr1-173350101-1	chr1	173350001	173350201	+	853.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	-16598.0	NM_010045	13349.0	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	1.62	2.52	0.0	2.82	12.68	12.23	4.98	15.64	4.72	2.01	9.55	5.01
Merged-chr8-85034860-3	chr8	85034761	85034961	+	853.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2054.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	10.09	10.56	14.26	8.45	11.45	11.29	6.31	11.16	23.21	19.58	18.09	11.59
Merged-chr1-180215247-3	chr1	180215154	180215354	+	853.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19234.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	6.46	8.8	26.24	7.24	15.14	14.42	3.32	5.21	16.33	13.56	18.09	6.89
Merged-chr18-84684206-3	chr18	84684096	84684296	+	853.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	1506.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	5.25	12.07	9.7	3.62	20.05	12.23	14.95	13.01	16.72	16.07	24.12	12.53
Merged-chr4-135318187-2	chr4	135318088	135318288	+	853.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35026.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	4.85	8.05	10.27	6.44	12.27	5.02	2.66	14.38	14.55	7.53	13.57	10.96
Merged-chr12-76371512-2	chr12	76371397	76371597	+	853.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1231.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	7.27	13.33	15.4	17.29	15.14	7.53	4.65	8.55	16.52	12.55	14.07	8.46
Merged-chr15-97373346-3	chr15	97373276	97373476	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-126089.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	13.33	7.04	3.42	6.44	5.32	7.84	3.32	9.95	17.9	16.07	13.06	7.83
Merged-chr1-14505001-1	chr1	14504901	14505101	+	853.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-194802.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	4.44	7.29	4.56	2.41	6.55	5.02	8.3	7.4	4.33	13.56	8.54	4.07
Merged-chr13-17983379-3	chr13	17983302	17983502	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9949.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	9.29	9.06	6.85	8.45	16.36	20.07	5.98	11.19	32.85	21.09	23.62	10.96
Merged-chr7-28716773-3	chr7	28716676	28716876	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015796)	promoter-TSS (NM_015796)	-6.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	27.46	34.46	37.65	36.6	38.86	34.81	28.9	33.81	10.62	18.08	10.05	5.33
Merged-chr15-97849656-4	chr15	97849515	97849715	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5113.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	11.31	10.56	9.7	13.67	11.45	10.66	4.65	5.41	10.23	11.05	10.55	5.95
Merged-chr9-44258443-3	chr9	44258348	44258548	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178420, intron 6 of 9)	intron (NM_178420, intron 6 of 9)	-6984.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	9.69	11.32	13.69	12.47	11.86	13.8	7.31	10.88	17.51	14.06	14.07	18.48
Merged-chr2-120362890-3	chr2	120362801	120363001	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001110496, exon 17 of 20)	exon (NM_001110496, exon 17 of 20)	-9764.0	NM_147153	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	2.42	3.02	11.98	11.66	11.45	3.14	4.32	12.06	16.72	6.03	14.07	6.58
Merged-chr16-38451966-1	chr16	38451866	38452066	+	853.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007414, intron 1 of 3)	intron (NM_007414, intron 1 of 3)	723.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	3.23	3.02	4.56	4.02	4.09	2.82	0.66	1.54	18.29	20.59	13.06	2.19
Merged-chr6-115697907-3	chr6	115697785	115697985	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21250.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	12.11	7.29	9.13	6.84	24.14	21.32	8.97	15.5	20.46	18.08	13.57	11.9
Merged-chr15-98792840-3	chr15	98792735	98792935	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021279, exon 4 of 4)	exon (NM_021279, exon 4 of 4)	2978.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	14.13	13.58	5.7	4.83	2.86	9.09	3.32	6.95	14.55	3.51	21.61	8.77
Merged-chr10-3976437-1	chr10	3976337	3976537	+	853.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	3362.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	1.62	4.28	12.55	4.83	15.55	9.09	1.99	10.6	3.93	3.01	7.03	2.51
Merged-chr19-46979108-3	chr19	46979010	46979210	+	853.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	-9543.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	9.69	16.6	16.54	8.45	14.32	29.16	18.93	23.8	15.14	9.04	17.59	12.22
Merged-chr8-70765979-2	chr8	70765868	70766068	+	853.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	695.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	15.75	19.37	11.41	9.65	13.91	16.62	14.28	15.39	18.88	15.06	14.57	9.08
Merged-chr6-146479373-2	chr6	146479250	146479450	+	853.285706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	22873.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.85	4.78	3.42	12.47	5.32	6.9	8.3	6.7	1.18	0.0	1.51	1.25
Merged-chr18-34416082-3	chr18	34415982	34416182	+	853.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016927, intron 4 of 14)	intron (NM_016927, intron 4 of 14)	6659.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	14.54	13.83	9.7	10.46	19.23	22.26	5.31	9.53	21.44	17.57	16.58	8.14
Merged-chr5-54211939-3	chr5	54211843	54212043	+	853.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138049.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	2.83	7.29	3.99	14.88	16.77	19.13	8.64	18.81	20.46	23.6	27.64	9.08
Merged-chr1-154118608-3	chr1	154118524	154118724	+	853.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82563.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	10.5	12.83	4.56	9.25	21.68	12.54	10.63	6.7	19.28	22.09	5.02	6.89
Merged-chr2-56305094-2	chr2	56304993	56305193	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-480718.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.0	1.51	0.57	0.8	8.18	7.84	9.63	9.2	10.23	4.52	14.07	6.89
Merged-chr14-14706609-2	chr14	14706446	14706646	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	3521.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	2.02	3.77	3.42	10.46	2.05	0.94	3.32	9.2	2.16	9.54	6.53	5.64
Merged-chr11-43470346-1	chr11	43470246	43470446	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3960.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	6.46	4.53	5.7	4.83	8.18	11.29	6.64	8.21	5.9	2.51	13.06	1.88
Merged-chr17-69197898-2	chr17	69197818	69198018	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	38562.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	2.42	5.53	16.54	4.02	8.59	4.7	3.99	6.7	14.75	13.05	6.03	8.77
Merged-chr13-52628714-3	chr13	52628588	52628788	+	853.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	31806.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	9.69	3.52	8.56	10.86	14.73	11.6	8.64	11.38	19.08	7.03	12.06	6.89
Merged-chr7-79821670-3	chr7	79821578	79821778	+	853.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008486)	TTS (NM_008486)	10951.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	7.67	9.31	15.4	12.87	7.36	5.64	12.95	13.46	15.34	7.03	25.12	6.58
Merged-chr9-59659951-3	chr9	59659838	59660038	+	853.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3570.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	9.69	14.84	7.99	11.26	8.18	18.81	7.97	6.36	22.62	21.59	27.13	19.42
Merged-chr10-67599562-3	chr10	67599455	67599655	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-27596.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	9.69	9.06	11.98	6.03	15.14	21.01	22.92	25.21	14.36	5.52	15.58	14.1
Merged-chr1-152015776-3	chr1	152015664	152015864	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	74556.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	14.94	10.56	21.11	12.87	15.55	15.05	13.62	14.94	9.64	12.55	9.55	5.01
Merged-chr10-87817035-3	chr10	87816956	87817156	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41209.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	8.48	4.53	10.27	8.45	20.46	17.56	13.62	29.78	19.87	20.59	16.58	12.22
Merged-chr3-16210756-3	chr3	16210639	16210839	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172677, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	27574.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	16.96	11.82	15.97	22.12	23.73	15.05	15.61	30.53	10.62	11.55	25.12	14.1
Merged-chr6-97408065-3	chr6	97407906	97408106	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	ORR1A4-int|LTR|ERVL-MaLR	51280.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.04	3.27	9.7	6.84	15.14	17.56	11.63	13.37	15.74	10.54	12.56	5.01
Merged-chr11-55020637-1	chr11	55020537	55020737	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	12834.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	9.29	14.09	13.12	13.67	0.82	0.31	2.66	1.6	2.16	1.0	3.52	2.19
Merged-chr16-30388139-2	chr16	30387985	30388185	+	853.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128096, intron 1 of 33)	CpG	445.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	10.5	8.55	7.99	3.22	6.14	14.11	10.96	10.99	12.39	9.04	12.56	20.36
Merged-chr10-117897961-3	chr10	117897854	117898054	+	853.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27505.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	12.11	8.55	14.26	14.88	6.95	13.8	20.26	25.09	14.75	7.53	9.55	9.71
Merged-chr16-24193542-3	chr16	24193468	24193668	+	853.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110878.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	11.31	9.56	18.83	7.64	13.09	16.31	15.28	22.01	9.44	16.07	15.07	12.53
Merged-chr18-83423233-3	chr18	83423135	83423335	+	853.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97351.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	3.63	5.79	14.83	6.44	21.27	13.17	16.28	23.92	19.08	16.57	28.64	10.34
Merged-chr17-24896488-3	chr17	24896393	24896593	+	853.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-7.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	19.79	9.06	13.69	10.86	35.18	13.48	7.64	14.86	16.92	20.08	21.1	8.46
Merged-chr3-142278269-2	chr3	142278153	142278353	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-108828.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.81	1.51	0.0	1.61	0.41	0.63	4.65	6.08	75.33	63.77	60.3	50.12
Merged-chrX-150440998-1	chrX	150440898	150441098	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164686)	promoter-TSS (NM_001164686)	-93.0	NM_001164686	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	6.86	2.01	1.71	3.22	5.32	9.41	8.97	7.63	3.93	6.03	6.03	4.7
Merged-chr2-19716067-2	chr2	19715959	19716159	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57997.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	6.86	5.79	3.99	5.23	6.55	6.9	4.32	10.96	10.82	14.06	16.58	16.92
Merged-chr8-79475317-1	chr8	79475217	79475417	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-75849.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.04	3.02	7.99	5.63	10.64	11.29	8.97	13.07	3.74	1.0	3.01	3.13
Merged-chr17-10703506-1	chr17	10703406	10703606	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	136685.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.81	0.25	0.57	1.61	11.05	4.39	3.99	7.57	0.0	2.01	1.51	0.31
Merged-chr5-140116733-1	chr5	140116633	140116833	+	853.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	B4A|SINE|B4	58185.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	3.23	7.8	15.97	3.22	2.45	3.76	2.33	9.0	7.67	11.55	6.53	5.01
Merged-chr11-108425600-1	chr11	108425500	108425700	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029606, intron 1 of 27)	CpG	334.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	8.48	8.8	5.7	4.02	9.0	3.14	3.99	7.18	9.44	10.04	18.09	5.95
Merged-chr19-61080495-1	chr19	61080395	61080595	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 10 of 15)	intron (NM_018869, intron 10 of 15)	60345.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.62	2.52	2.28	4.83	4.5	4.39	9.63	7.32	1.97	3.01	3.52	2.51
Merged-chrX-167106111-1	chrX	167106011	167106211	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35741.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	4.04	5.79	7.42	4.42	5.73	10.98	12.95	13.46	8.06	0.5	2.51	5.01
Merged-chr13-91387976-1	chr13	91387876	91388076	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045161, exon 1 of 3)	non-coding (NR_045161, exon 1 of 3)	109.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	4.04	1.51	1.14	1.61	1.23	11.29	0.66	6.84	1.97	5.52	7.03	3.13
Merged-chr6-92942153-1	chr6	92942053	92942253	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	1571.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	2.42	1.01	1.71	0.4	6.95	2.82	7.97	7.99	0.0	0.5	0.0	1.88
Merged-chr13-51100645-1	chr13	51100545	51100745	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	82.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	10.09	13.33	13.69	12.07	11.86	10.03	14.95	5.41	10.62	19.08	13.57	11.28
Merged-chr10-41587132-1	chr10	41587032	41587232	+	853.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 32 of 47)	intron (NM_001358562, intron 32 of 47)	19116.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.25	7.8	10.84	3.62	6.14	8.47	7.97	8.61	10.82	12.55	18.09	10.34
Merged-chr4-33242237-1	chr4	33242137	33242337	+	853.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6550.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	13.33	13.58	7.42	13.67	4.91	15.68	3.65	2.72	5.11	10.04	2.01	2.51
Merged-chr7-118703936-2	chr7	118703846	118704046	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1792.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	6.86	3.52	3.42	1.61	11.05	7.84	6.31	7.37	17.31	7.53	21.61	13.16
Merged-chr6-40435245-2	chr6	40435229	40435429	+	853.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356375, intron 1 of 8)	CpG	806.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	3.63	6.29	3.99	7.24	2.86	8.78	15.94	6.17	5.31	5.02	6.03	2.82
Merged-chr11-21369745-1	chr11	21369645	21369845	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	884.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	7.27	4.53	3.42	2.41	10.23	12.86	10.96	13.74	4.52	10.04	7.03	3.76
Merged-chr17-51178238-1	chr17	51178138	51178338	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1114.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	2.02	3.77	2.28	2.82	6.14	9.72	2.33	6.98	8.26	8.03	5.02	2.82
Merged-chr15-62071506-3	chr15	62071418	62071618	+	852.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	32261.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	14.54	3.77	3.99	11.66	20.05	14.74	6.31	9.34	12.19	15.06	17.59	7.52
Merged-chr19-8993023-3	chr19	8992918	8993118	+	852.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	3734.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	15.75	13.58	12.55	13.27	17.59	29.16	6.64	11.61	8.06	17.57	18.59	5.64
Merged-chr10-128909603-5	chr10	128909436	128909636	+	852.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007653)	promoter-TSS (NM_007653)	191.0	NM_001282966	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	1.21	5.79	2.28	7.24	7.77	4.39	2.66	8.61	3.74	2.51	0.5	2.19
Merged-chr18-46450889-2	chr18	46450789	46450989	+	852.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14927.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.42	3.02	0.57	0.8	9.41	7.84	6.98	6.81	15.93	13.56	25.12	11.59
Merged-chr10-60350531-2	chr10	60350412	60350612	+	852.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3661.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.44	2.52	3.42	8.45	6.55	8.47	8.3	9.59	21.05	18.58	8.04	6.89
Merged-chr17-84099848-3	chr17	84099744	84099944	+	852.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21184.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	13.33	5.79	16.54	17.29	11.45	15.99	29.9	40.09	8.46	4.02	8.04	10.65
Merged-chr13-19828270-3	chr13	19828163	19828363	+	852.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4006.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.23	5.53	14.83	11.66	14.32	13.8	11.29	8.36	32.45	26.61	29.14	19.11
Merged-chr8-115611642-3	chr8	115611540	115611740	+	852.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	95254.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	15.75	11.82	11.41	6.84	8.18	8.78	10.96	10.65	12.39	11.55	17.59	6.89
Merged-chr9-13555823-3	chr9	13555710	13555910	+	852.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64179.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	8.88	18.86	11.41	14.48	18.82	20.7	6.31	13.63	16.33	13.56	14.07	9.71
Merged-chr19-53566011-2	chr19	53565900	53566100	+	852.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34396.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	14.13	9.06	8.56	7.64	47.46	19.13	41.85	26.13	7.47	15.57	8.54	1.88
Merged-chr8-79150693-3	chr8	79150600	79150800	+	852.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	97883.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	17.77	15.59	13.12	9.65	10.64	11.29	10.63	7.23	20.65	29.62	26.13	2.82
Merged-chr1-178463886-3	chr1	178463780	178463980	+	852.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026626, intron 3 of 6)	ERV3-16A3_I-int|LTR|ERVL	57862.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	11.31	9.56	11.98	11.66	5.73	13.17	14.95	10.26	9.44	15.57	24.62	6.89
Merged-chr8-90841667-3	chr8	90841577	90841777	+	852.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12842.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	7.27	7.04	18.25	9.65	6.55	11.6	10.3	9.2	12.78	6.03	26.13	12.53
Merged-chr10-94639458-1	chr10	94639358	94639558	+	852.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49155.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	8.08	0.5	7.99	2.41	10.23	16.31	9.97	9.08	5.11	8.54	9.04	4.07
Merged-chr11-71159960-1	chr11	71159860	71160060	+	852.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040696, intron 12 of 14)	intron (NM_001040696, intron 12 of 14)	-15256.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	1.62	4.78	6.85	4.42	24.14	16.31	7.64	10.09	12.19	7.53	1.51	8.46
Merged-chr2-53000506-3	chr2	53000448	53000648	+	852.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	142680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.46	8.55	9.13	3.62	12.68	8.15	3.99	11.5	10.82	9.04	11.56	3.45
Merged-chr13-93898720-2	chr13	93898609	93898809	+	852.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	107932.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	10.5	9.31	17.68	10.46	21.68	19.44	37.54	34.12	3.34	1.51	2.51	3.76
Merged-chr13-41603591-3	chr13	41603454	41603654	+	852.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2662.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.86	8.8	0.57	6.03	9.41	11.29	6.98	3.95	8.65	9.54	13.57	5.64
Merged-chr16-21389250-3	chr16	21389073	21389273	+	852.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-33945.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	6.06	7.55	1.14	15.28	10.23	3.45	5.65	7.68	11.8	4.52	6.53	6.27
Merged-chr15-12205527-1	chr15	12205427	12205627	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	CpG	499.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	19.79	32.2	13.69	16.09	11.86	24.46	26.24	20.16	26.16	21.09	18.09	11.28
Merged-chr4-130914859-3	chr4	130914744	130914944	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	MIR3|SINE|MIR	1510.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	10.9	12.58	9.7	5.63	2.05	11.29	16.28	10.88	12.39	6.03	9.04	10.34
Merged-chr11-117873429-3	chr11	117873350	117873550	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027919)	promoter-TSS (NM_027919)	76.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	12.11	11.57	6.28	8.85	14.32	12.86	9.3	12.56	16.72	17.57	30.15	18.17
Merged-chr7-44983307-3	chr7	44983205	44983405	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252476, intron 2 of 9)	intron (NM_001252476, intron 2 of 9)	3115.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	12.92	6.54	2.85	12.87	12.27	12.54	12.62	6.67	18.49	13.56	18.09	7.21
Merged-chr12-110465071-1	chr12	110464971	110465171	+	852.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	17892.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	1.62	2.52	3.99	3.22	9.82	9.09	3.99	10.37	2.75	5.02	6.53	2.19
Merged-chr11-20151503-3	chr11	20151397	20151597	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-38546.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	7.27	7.8	4.56	19.31	13.91	13.17	3.32	9.56	17.51	11.05	13.57	14.72
Merged-chr12-84784690-3	chr12	84784583	84784783	+	852.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 34 of 34)	intron (NM_013589, intron 34 of 34)	11413.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	12.11	9.81	30.8	10.46	10.23	12.54	5.98	10.4	22.03	9.04	14.07	11.9
Merged-chr6-50303717-3	chr6	50303617	50303817	+	852.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 18 of 21)	L1MA8|LINE|L1	-41948.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	7.67	11.32	11.98	2.41	10.64	11.92	8.3	12.73	16.92	14.56	15.58	6.58
Merged-chr7-44892574-6	chr7	44892471	44892671	+	852.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-147.0	NM_001331206	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	8.88	8.55	6.85	9.65	11.45	8.78	5.98	4.93	14.75	8.54	7.03	7.83
Merged-chr14-66186268-3	chr14	66186185	66186385	+	852.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27539.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	11.71	12.58	15.4	11.26	9.82	9.09	9.3	6.34	27.54	18.58	22.61	11.9
Merged-chr6-137387136-3	chr6	137387033	137387233	+	852.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-23588.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	16.96	9.56	12.55	13.67	15.14	16.62	8.64	9.76	20.26	15.06	37.18	9.08
Merged-chr1-138275130-3	chr1	138275025	138275225	+	852.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177397, intron 1 of 2)	intron (NM_177397, intron 1 of 2)	1387.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.46	10.56	21.11	27.35	14.73	11.6	13.29	32.5	11.41	8.54	18.59	8.14
Merged-chr1-134073193-6	chr1	134073123	134073323	+	852.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5932.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.86	11.82	18.83	6.44	9.82	8.78	3.99	6.81	8.65	9.54	7.03	3.45
Merged-chr1-177443106-3	chr1	177443022	177443222	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355099, intron 1 of 1)	intron (NM_001355099, intron 1 of 1)	771.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	13.73	6.29	12.55	4.02	12.27	11.6	7.97	10.37	15.14	15.57	11.05	8.77
Merged-chr14-19904181-3	chr14	19904095	19904295	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	65270.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	10.5	9.56	25.1	21.32	27.41	15.37	21.59	41.3	7.67	5.02	12.06	12.84
Merged-chr8-94812985-3	chr8	94812887	94813087	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011332)	TTS (NM_011332)	2534.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	13.73	8.8	9.7	7.24	9.82	11.6	4.32	9.11	8.85	16.57	6.53	13.47
Merged-chr7-27451450-3	chr7	27451361	27451561	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-957.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	8.88	8.3	19.97	11.26	24.14	18.19	10.96	23.83	17.11	16.07	12.06	12.22
Merged-chr18-68337451-3	chr18	68337350	68337550	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013596)	promoter-TSS (NM_013596)	-153.0	NM_013596	17203.0	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	12.11	8.3	6.28	20.51	13.91	15.37	17.27	11.24	10.62	9.04	15.58	11.9
Merged-chr5-139457654-2	chr5	139457505	139457705	+	852.5499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 1 of 4)	intron (NM_028469, intron 1 of 4)	2929.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	5.65	2.01	1.71	3.62	11.05	10.03	11.63	15.42	7.28	3.01	7.03	10.96
Merged-chrX-23365190-3	chrX	23365107	23365307	+	852.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026167)	promoter-TSS (NM_026167)	-125.0	NM_026167	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	7.27	17.61	9.7	17.7	20.86	9.41	17.94	15.53	8.85	12.05	18.09	12.22
Merged-chr10-81519743-3	chr10	81519645	81519845	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	4480.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	18.17	10.82	11.98	5.63	12.27	10.66	9.63	16.77	17.11	15.57	13.06	10.02
Merged-chr1-77203053-2	chr1	77202949	77203149	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	293719.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	9.69	5.53	6.28	18.9	3.27	2.82	9.63	11.55	8.46	2.51	13.57	4.07
Merged-chr2-151542940-2	chr2	151542826	151543026	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126058, intron 2 of 3)	CpG-8654	443.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	12.52	7.55	9.13	3.22	4.5	9.72	18.27	12.5	15.34	12.55	9.04	5.95
Merged-chr9-49051084-1	chr9	49050984	49051184	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-4497.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.4	3.52	6.28	9.65	7.36	12.23	11.63	11.97	2.95	1.51	3.52	1.88
Merged-chr18-79257560-1	chr18	79257460	79257660	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-148169.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.81	2.26	3.42	4.02	4.09	6.27	6.98	8.44	5.51	2.51	6.53	1.25
Merged-chr1-92652090-1	chr1	92651990	92652190	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3249.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.65	4.28	3.99	10.46	7.36	3.45	8.64	8.19	8.26	4.02	7.54	5.01
Merged-chr2-167920111-3	chr2	167920034	167920234	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.65	12.83	14.83	9.25	17.59	8.78	24.25	13.82	15.34	5.02	8.54	3.76
Merged-chr1-125438142-3	chr1	125438034	125438234	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2407.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	8.48	6.79	9.13	8.04	20.46	19.44	16.94	14.3	18.69	25.61	16.08	13.16
Merged-chr8-46597545-2	chr8	46597415	46597615	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	19712.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0.81	2.52	11.41	17.7	8.18	5.64	5.31	9.22	12.98	0.5	1.51	2.51
Merged-chr2-52539440-1	chr2	52539340	52539540	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	19171.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.23	2.52	13.12	1.21	4.09	4.7	9.97	10.57	7.08	0.5	3.52	0.63
Merged-chr4-126004223-3	chr4	126004117	126004317	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20442.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	16.56	3.02	10.27	4.83	10.64	14.74	4.98	4.29	19.87	15.57	23.62	3.76
Merged-chr4-44910321-2	chr4	44910222	44910422	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-71072.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	7.67	6.79	17.11	14.88	5.73	10.66	9.3	18.03	8.46	5.52	22.61	4.07
Merged-chr7-24886022-2	chr7	24885930	24886130	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360125, intron 3 of 5)	intron (NM_001360125, intron 3 of 5)	1117.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	18.98	12.83	9.13	1.61	7.77	12.54	10.3	2.3	6.49	4.52	15.58	2.82
Merged-chr11-23416721-1	chr11	23416621	23416821	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190401, intron 35 of 79)	L1MC4|LINE|L1	81318.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	4.85	4.28	6.85	6.84	4.5	11.29	5.98	9.03	6.69	7.53	4.02	3.76
Merged-chr1-157043551-1	chr1	157043451	157043651	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65099.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.86	1.76	2.85	3.62	4.09	4.7	5.98	7.01	7.28	2.01	0.5	3.13
Merged-chr8-84042397-4	chr8	84042338	84042538	+	852.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_173184)	TTS (NM_173184)	137.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	10.5	13.08	10.27	8.85	5.73	12.86	4.98	6.84	10.23	5.52	14.07	6.89
Merged-chr8-105384385-3	chr8	105384268	105384468	+	852.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301173, intron 15 of 15)	intron (NM_001301173, intron 15 of 15)	8987.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	6.86	7.29	13.69	8.45	12.68	13.17	17.27	12.87	26.36	12.05	17.59	12.22
Merged-chrX-101769697-3	chrX	101769593	101769793	+	852.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24963.0	NM_001359671	382231.0	Mm.328112	NM_001359671	ENSMUSG00000046774	8030474K03Rik	Gm1142	RIKEN cDNA 8030474K03 gene	protein-coding	18.98	4.28	6.85	8.04	14.73	18.19	5.31	24.14	22.62	10.04	18.59	14.72
Merged-chr7-122922307-3	chr7	122922237	122922437	+	852.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	48122.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	14.94	4.53	9.7	7.24	13.91	17.25	10.63	14.44	10.03	13.05	23.11	17.86
Merged-chr8-46868417-3	chr8	46868318	46868518	+	852.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-118469.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.85	12.58	11.41	8.85	23.32	20.38	12.62	17.1	13.57	13.05	17.08	12.53
Merged-chrX-10318413-3	chrX	10318335	10318535	+	852.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008769, intron 9 of 9)	RLTR26_Mus|LTR|ERVK	66130.0	NM_008769	18416.0	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	7.67	12.32	11.98	23.33	12.27	12.23	11.96	19.88	12.59	11.05	20.1	3.76
Merged-chr8-122702394-2	chr8	122702295	122702495	+	852.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3286.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	9.29	22.13	28.52	4.83	2.45	6.9	6.64	3.62	13.18	2.51	8.04	11.59
Merged-chr5-130129561-3	chr5	130129458	130129658	+	852.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013837, exon 4 of 6)	exon (NM_013837, exon 4 of 6)	-15330.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	18.17	26.41	4.56	6.44	14.32	31.04	8.3	8.72	26.16	18.08	13.06	11.28
Merged-chr16-97954443-3	chr16	97954368	97954568	+	852.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320385, intron 1 of 2)	intron (NM_001320385, intron 1 of 2)	8154.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	12.92	9.31	24.53	10.86	5.73	17.25	15.61	23.1	17.31	12.05	16.58	6.58
Merged-chr3-68794592-2	chr3	68794483	68794683	+	852.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33088.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	2.83	4.28	12.55	8.85	9.41	11.6	8.97	14.8	4.92	8.03	3.52	11.59
Merged-chr3-51413505-2	chr3	51413403	51413603	+	852.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2513.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	10.09	4.53	3.99	11.66	16.36	3.76	13.29	13.37	2.36	8.03	17.08	6.27
Merged-chr4-149056048-3	chr4	149055940	149056140	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	43772.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	56.13	20.12	50.2	40.62	46.23	32.61	36.54	68.61	7.87	5.52	9.04	6.27
Merged-chr6-53448434-1	chr6	53448334	53448534	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-124940.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.81	2.01	1.14	7.24	8.18	11.29	3.65	8.05	1.38	4.52	4.02	2.82
Merged-chr1-120044888-1	chr1	120044788	120044988	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001012322, intron 7 of 13)	intron (NM_001012322, intron 7 of 13)	28892.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.44	3.77	2.28	2.01	9.0	3.45	9.97	12.59	4.52	5.52	7.54	5.64
Merged-chr18-30508130-3	chr18	30508032	30508232	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	235267.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	17.77	22.13	24.53	20.91	13.91	10.98	4.65	12.59	11.8	3.51	17.59	11.9
Merged-chr6-47453817-1	chr6	47453717	47453917	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012042)	promoter-TSS (NM_012042)	85.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	4.04	6.79	3.42	11.66	8.59	14.74	7.64	9.84	11.6	7.53	5.53	10.65
Merged-chr11-70472959-1	chr11	70472859	70473059	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12975.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.25	5.79	9.13	2.41	6.14	7.53	12.62	10.01	7.47	3.01	8.54	5.33
Merged-chr6-10154152-1	chr6	10154052	10154252	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	820226.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	16.96	9.06	19.97	21.32	0.0	0.94	2.33	2.5	0.39	1.0	1.0	0.31
Merged-chr8-27264336-3	chr8	27264267	27264467	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	4040.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	8.88	13.33	6.28	4.42	10.23	11.92	11.63	12.81	20.46	30.63	21.1	10.34
Merged-chr8-40307431-3	chr8	40307329	40307529	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030110)	promoter-TSS (NM_030110)	500.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	12.52	16.85	13.69	9.65	11.45	20.07	15.94	18.08	20.65	24.6	28.14	18.48
Merged-chr7-119880532-3	chr7	119880431	119880631	+	852.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14927.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	11.31	6.79	3.42	6.03	13.5	15.05	10.96	18.31	19.47	26.61	16.08	15.98
Merged-chr13-64408270-3	chr13	64408235	64408435	+	852.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24218.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	7.27	2.01	4.56	6.84	9.0	7.53	9.97	11.16	9.44	7.03	10.05	7.52
Merged-chr4-149705565-2	chr4	149705469	149705669	+	852.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3940.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.06	6.54	5.7	6.44	13.91	6.9	7.97	14.27	13.37	15.06	17.59	6.89
Merged-chr3-129634599-1	chr3	129634499	129634699	+	852.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_130450, exon 5 of 5)	3' UTR (NM_130450, exon 5 of 5)	90487.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	8.08	3.02	1.14	6.84	7.36	7.21	13.95	9.98	5.51	11.05	9.04	3.45
Merged-chr4-59244501-3	chr4	59244420	59244620	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15531.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	5.25	12.83	17.11	15.69	6.95	5.02	8.64	18.2	19.67	25.11	17.59	9.71
Merged-chr1-179517105-3	chr1	179517001	179517201	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	940.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	9.69	11.57	3.42	12.47	13.09	21.64	10.3	16.37	9.64	9.04	16.58	6.89
Merged-chr6-38535219-3	chr6	38535130	38535330	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025363, intron 1 of 1)	intron (NM_025363, intron 1 of 1)	369.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	11.71	12.32	7.99	14.08	15.55	12.86	10.3	14.78	20.26	14.06	20.6	23.49
Merged-chr10-96373689-3	chr10	96373611	96373811	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	147504.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	13.73	11.07	18.25	17.7	11.86	12.54	7.31	16.23	9.64	11.55	10.05	5.33
Merged-chr4-119339079-3	chr4	119338966	119339166	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270446, intron 5 of 9)	intron (NM_001270446, intron 5 of 9)	-18543.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	11.71	11.07	14.26	8.04	13.5	14.42	6.31	11.61	16.33	13.05	10.05	15.98
Merged-chr19-24301136-3	chr19	24301067	24301267	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 14 of 14)	intron (NM_008846, intron 14 of 14)	-20581.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	21.4	8.55	15.97	13.67	15.14	9.09	23.25	17.13	18.29	10.04	27.13	6.58
Merged-chr7-16885399-4	chr7	16885253	16885453	+	852.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081655, exon 4 of 4)	exon (NM_001081655, exon 4 of 4)	-6433.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	1.62	4.02	2.85	5.63	13.09	6.59	2.33	8.94	15.74	12.55	24.62	13.78
Merged-chr13-94296620-1	chr13	94296520	94296720	+	852.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10789.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	8.48	3.77	3.42	2.01	10.64	8.78	7.64	8.75	7.08	10.54	7.54	6.27
Merged-chr14-99970385-3	chr14	99970288	99970488	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	179408.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	5.65	10.56	7.99	12.87	11.86	13.8	10.63	19.54	18.88	6.03	24.12	10.34
Merged-chr19-10944121-3	chr19	10944033	10944233	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023731, intron 2 of 3)	MIR|SINE|MIR	5133.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	11.71	11.07	23.96	12.87	8.59	14.11	3.65	7.29	13.96	16.07	28.14	8.77
Merged-chr3-93555337-3	chr3	93555212	93555412	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009112, intron 1 of 2)	CpG	195.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	6.46	12.83	5.7	13.67	9.41	5.64	10.3	7.91	8.06	5.52	7.03	6.89
Merged-chr4-95390732-3	chr4	95390629	95390829	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-166778.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	6.06	6.54	14.26	15.28	15.14	9.72	14.62	17.1	13.96	4.52	15.58	10.65
Merged-chr3-131271412-2	chr3	131271315	131271515	+	852.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008212, intron 1 of 7)	intron (NM_008212, intron 1 of 7)	686.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	16.56	5.28	5.13	4.42	8.18	14.42	12.95	7.09	15.14	7.03	20.6	12.84
Merged-chr10-80612098-2	chr10	80611998	80612198	+	852.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019575, intron 5 of 6)	intron (NM_019575, intron 5 of 6)	2838.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	8.08	4.78	9.13	5.63	15.55	11.92	4.65	7.85	10.23	7.53	19.09	9.4
Merged-chr10-7850807-2	chr10	7850711	7850911	+	852.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	14430.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	12.92	4.78	7.99	14.08	12.27	13.48	15.94	23.89	1.77	1.51	2.01	2.19
Merged-chr19-5151475-3	chr19	5151382	5151582	+	852.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153129, intron 10 of 23)	intron (NM_153129, intron 10 of 23)	-33074.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	17.36	16.6	27.95	15.28	20.05	21.01	6.31	17.55	14.55	16.07	9.55	13.16
Merged-chr10-120702042-2	chr10	120701944	120702144	+	852.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63688.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	6.06	5.03	3.42	4.83	12.68	7.21	4.65	7.82	12.98	6.03	18.59	7.83
Merged-chr17-31296135-2	chr17	31295979	31296179	+	852.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001242427)	promoter-TSS (NM_001242427)	-145.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	4.44	4.78	4.56	1.61	9.0	7.53	9.97	5.92	7.87	8.03	7.03	8.77
Merged-chr1-58860828-3	chr1	58860687	58860887	+	852.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58285.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	10.09	10.56	23.96	14.48	15.14	12.54	12.29	9.36	18.49	7.03	14.57	5.01
Merged-chr9-39910140-3	chr9	39910036	39910236	+	852.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146613, exon 1 of 1)	exon (NM_146613, exon 1 of 1)	331.0	NM_146613	258606.0	Mm.377588	NM_146613	ENSMUSG00000095390	Olfr229	MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1	olfactory receptor 229	protein-coding	10.09	5.53	13.12	15.28	9.41	15.05	8.3	14.16	26.55	16.57	19.09	17.23
Merged-chr1-93754138-3	chr1	93754061	93754261	+	852.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174874)	promoter-TSS (NM_174874)	677.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	11.71	17.1	19.4	11.66	9.0	8.78	12.29	9.25	8.46	23.1	15.58	14.1
Merged-chr11-4388725-1	chr11	4388625	4388825	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029458, intron 10 of 10)	L1M4b|LINE|L1	52357.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	4.44	4.78	2.28	5.63	3.27	5.02	8.3	6.95	0.0	8.03	1.51	1.57
Merged-chrX-139550662-3	chrX	139550559	139550759	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175326, intron 13 of 13)	intron (NM_175326, intron 13 of 13)	-12681.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	9.29	6.04	9.13	10.46	21.27	27.28	14.28	30.76	28.91	24.6	35.17	14.1
Merged-chr10-51530642-1	chr10	51530542	51530742	+	852.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	39744.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.86	4.78	4.56	4.83	5.32	9.09	1.66	2.52	14.36	14.06	11.05	13.16
Merged-chr9-106234183-2	chr9	106234084	106234284	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291835, exon 11 of 11)	exon (NM_001291835, exon 11 of 11)	11586.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	12.11	8.3	13.12	10.86	6.55	10.03	4.32	15.0	16.92	1.51	4.52	6.58
Merged-chr1-165193974-2	chr1	165193866	165194066	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	CpG	467.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	14.13	7.8	9.7	5.23	8.59	12.86	16.61	7.91	12.78	10.54	13.06	11.28
Merged-chrX-162642583-1	chrX	162642483	162642683	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	intron (NR_038088, intron 4 of 5)	1075.0	NM_001359103	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	5.65	1.01	1.14	1.21	5.73	8.15	5.65	9.22	0.59	2.01	3.01	8.14
Merged-chr4-144998416-1	chr4	144998316	144998516	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	105279.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.23	5.28	1.14	0.8	8.18	11.29	11.63	9.48	5.31	5.52	6.03	4.07
Merged-chr19-56801131-1	chr19	56801031	56801231	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170757, intron 7 of 14)	intron (NM_170757, intron 7 of 14)	12552.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	10.9	5.03	1.71	6.03	6.55	9.72	9.63	9.73	5.11	7.03	12.06	2.19
Merged-chr5-102055689-2	chr5	102055589	102055789	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	14232.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.06	1.26	5.13	5.63	6.55	7.53	10.96	12.22	19.28	10.04	10.05	7.21
Merged-chr1-176075609-2	chr1	176075507	176075707	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	138335.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.25	8.3	7.42	18.5	2.86	5.33	8.64	16.35	4.92	4.02	4.02	4.07
Merged-chr11-104448693-2	chr11	104448584	104448784	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	B2_Mm1t|SINE|B2	-6393.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	11.71	11.57	5.7	2.82	2.86	0.63	1.33	0.79	10.23	5.52	11.56	5.01
Merged-chr13-108297706-1	chr13	108297606	108297806	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18631.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	2.02	1.26	1.14	1.61	3.68	3.14	1.99	1.96	1.77	2.51	3.01	0.94
Merged-chr10-121033428-1	chr10	121033328	121033528	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-576.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	6.86	8.8	3.99	4.42	5.73	5.64	5.65	7.15	3.54	5.02	3.52	5.95
Merged-chr1-77468856-1	chr1	77468756	77468956	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	MIR|SINE|MIR	27912.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	3.23	7.04	2.28	8.04	10.64	11.6	7.97	11.19	3.93	3.51	7.03	1.88
Merged-chr2-104693549-2	chr2	104693421	104693621	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177190, intron 5 of 9)	intron (NM_177190, intron 5 of 9)	18641.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	2.42	5.53	15.4	2.01	9.82	5.33	12.29	6.36	1.38	4.02	6.03	4.07
Merged-chr15-5856454-3	chr15	5856360	5856560	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	188244.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	8.08	10.82	14.83	10.86	17.59	5.64	14.28	18.2	15.54	14.06	18.59	4.39
Merged-chr13-107845066-1	chr13	107844966	107845166	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	44998.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	7.27	2.77	2.28	6.44	4.09	2.82	4.32	10.54	2.56	1.51	2.51	0.94
Merged-chr6-82041645-1	chr6	82041545	82041745	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145570)	promoter-TSS (NM_145570)	17.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	4.44	3.52	9.13	5.23	9.0	7.21	5.98	7.54	2.75	0.0	0.0	5.01
Merged-chr16-97062277-1	chr16	97062177	97062377	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031174, intron 1 of 32)	MTD|LTR|ERVL-MaLR	108458.0	NM_031174	13508.0	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	DS cell adhesion molecule	protein-coding	0.81	1.51	3.42	2.41	4.09	0.63	6.98	3.84	2.95	3.51	6.53	0.63
Merged-chr18-88735830-1	chr18	88735730	88735930	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	158377.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.06	2.01	8.56	2.82	4.91	6.27	1.33	9.56	8.85	5.02	6.03	7.52
Merged-chr16-11875405-3	chr16	11875291	11875491	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-25973.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	12.11	11.57	5.7	5.23	2.86	10.35	1.0	14.78	11.21	17.57	15.07	9.4
Merged-chr5-8877322-1	chr5	8877222	8877422	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16399.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.81	1.01	0.0	0.8	2.86	1.57	8.3	7.12	2.75	8.03	6.03	0.31
Merged-chr4-72413503-1	chr4	72413403	72413603	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212259.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	4.04	1.01	1.14	1.61	1.64	0.63	4.65	6.06	5.11	3.01	1.0	3.76
Merged-chr7-53668438-1	chr7	53668338	53668538	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	223451.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.81	0.25	0.0	0.8	4.09	1.88	7.31	14.3	5.31	3.51	9.04	5.64
Merged-chr8-73352746-4	chr8	73352681	73352881	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010687, exon 1 of 15)	5' UTR (NM_010687, exon 1 of 15)	759.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	7.67	16.6	11.41	18.1	7.77	11.29	8.97	13.01	8.65	17.57	9.55	7.52
Merged-chr12-75818833-2	chr12	75818731	75818931	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	CpG	513.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	14.54	11.32	12.55	9.65	12.27	12.23	11.29	16.09	14.75	19.08	24.62	10.96
Merged-chr8-36094171-1	chr8	36094071	36094271	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-657.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	1.62	3.77	3.42	3.22	11.45	4.08	3.99	5.02	6.88	4.02	7.03	5.95
Merged-chr7-118448735-3	chr7	118448633	118448833	+	851.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362179)	promoter-TSS (NM_001362179)	-511.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	14.54	14.59	3.42	12.47	7.36	14.42	12.62	8.92	8.46	15.57	15.07	16.29
Merged-chr15-58632359-4	chr15	58632303	58632503	+	851.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	191024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.4	1.01	5.13	0.0	6.14	7.21	2.33	1.32	3.74	2.01	1.0	4.39
Merged-chr11-70700766-3	chr11	70700670	70700870	+	851.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	222.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	11.31	8.3	11.98	12.07	14.32	19.13	12.62	8.21	13.37	14.06	18.09	5.64
Merged-chr7-29818962-3	chr7	29818845	29819045	+	851.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145880, intron 1 of 4)	intron (NM_001145880, intron 1 of 4)	2873.0	NM_001145880	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	4.44	4.28	8.56	5.23	4.5	8.47	6.64	7.88	19.47	15.06	25.63	9.4
Merged-chr13-109446306-3	chr13	109446211	109446411	+	851.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	121567.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	21.4	5.79	45.64	33.38	27.41	13.17	51.15	66.84	12.19	6.53	29.65	5.95
Merged-chr8-60964149-3	chr8	60964070	60964270	+	851.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-9371.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	9.69	6.54	6.28	10.05	11.05	12.54	3.32	13.49	17.51	5.02	17.59	6.89
Merged-chr16-57555893-3	chr16	57555800	57556000	+	851.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	6658.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.67	8.8	8.56	8.04	12.27	8.78	12.95	32.69	21.05	17.07	19.09	11.59
Merged-chr12-79612913-3	chr12	79612821	79613021	+	851.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311812.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	17.36	9.81	10.84	5.23	15.14	17.87	2.66	10.96	20.06	15.57	13.06	12.22
Merged-chr12-76306371-3	chr12	76306259	76306459	+	851.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138745, intron 21 of 27)	intron (NM_138745, intron 21 of 27)	-18532.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	9.69	9.31	7.42	12.47	10.64	16.31	10.96	17.36	14.55	13.56	31.15	20.05
Merged-chr16-84610908-2	chr16	84610794	84610994	+	851.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68895.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	9.29	13.83	23.96	16.49	0.0	0.94	0.0	0.53	20.65	12.05	22.11	17.54
Merged-chr4-119140311-2	chr4	119140222	119140422	+	851.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31577.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	13.73	8.05	5.7	8.45	15.96	11.6	3.32	5.97	12.98	18.58	25.63	10.02
Merged-chr2-148048627-3	chr2	148048482	148048682	+	851.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1613.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	5.65	5.79	3.42	10.05	6.14	5.96	7.97	6.31	12.39	7.03	21.1	8.77
Merged-chr1-131198508-3	chr1	131198425	131198625	+	851.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	1660.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	20.19	9.06	27.38	10.86	13.09	9.41	8.97	18.0	17.11	10.54	14.07	9.4
Merged-chr11-97740410-3	chr11	97740313	97740513	+	851.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054051, intron 1 of 9)	intron (NM_054051, intron 1 of 9)	4291.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	18.57	15.09	25.1	11.66	6.55	35.75	9.3	4.65	10.62	17.57	13.57	6.89
Merged-chr4-85618979-1	chr4	85618879	85619079	+	851.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	413523.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	2.42	1.76	0.0	0.0	1.23	3.76	0.66	2.83	20.65	19.08	15.58	10.02
Merged-chr8-14988970-3	chr8	14988880	14989080	+	851.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-22045.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	19.38	12.58	10.27	26.95	9.41	7.53	8.97	16.35	9.64	11.55	17.08	5.33
Merged-chr12-80065256-3	chr12	80065156	80065356	+	851.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47757.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	8.88	7.04	13.69	9.65	26.18	24.77	8.64	19.88	26.55	28.12	26.63	14.41
Merged-chr17-48264839-2	chr17	48264739	48264939	+	851.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172623, exon 2 of 6)	exon (NM_172623, exon 2 of 6)	544.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.65	4.53	1.14	1.21	12.27	14.74	15.61	8.24	10.23	18.08	16.58	3.45
Merged-chr11-62646790-2	chr11	62646681	62646881	+	851.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1268.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	21.0	13.08	6.85	0.8	11.86	23.83	5.98	4.07	18.88	47.7	16.58	8.46
Merged-chr12-100684750-2	chr12	100684627	100684827	+	851.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 1 of 17)	L1MB2|LINE|L1	40393.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	10.09	9.81	2.85	3.22	10.64	18.19	5.65	8.64	11.01	19.08	5.53	5.95
Merged-chr5-125141282-3	chr5	125141176	125141376	+	851.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37938.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	22.21	10.31	14.26	20.91	26.18	11.92	6.64	16.79	11.6	10.04	26.13	9.08
Merged-chr16-55951762-3	chr16	55951696	55951896	+	851.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14479.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	7.27	8.3	6.85	10.46	13.91	11.92	10.3	8.52	13.77	13.56	11.56	4.7
Merged-chr2-167497474-3	chr2	167497345	167497545	+	851.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030743, intron 1 of 7)	B3|SINE|B2	-4571.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	9.69	9.81	4.56	8.04	3.27	14.11	2.66	7.99	16.33	20.08	11.05	14.1
Merged-chr6-47188436-3	chr6	47188340	47188540	+	851.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-55956.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	15.34	18.36	13.69	19.71	17.18	25.4	18.93	22.26	9.24	8.54	13.06	7.83
Merged-chr7-90265790-2	chr7	90265689	90265889	+	851.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183293)	promoter-TSS (NM_183293)	-357.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	5.65	5.03	1.14	5.63	7.36	9.72	4.98	9.98	18.1	17.57	18.09	10.96
Merged-chr18-4031127-2	chr18	4030976	4031176	+	851.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-134756.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.04	3.52	2.28	2.41	2.86	5.33	2.66	7.01	9.64	11.05	7.54	4.07
Merged-chr12-111889420-3	chr12	111889317	111889517	+	851.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	MIRb|SINE|MIR	18638.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	13.73	8.05	14.83	14.08	10.23	6.9	10.3	22.01	20.46	19.08	13.57	15.35
Merged-chr8-105983626-3	chr8	105983537	105983737	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_027960	71854.0	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	11.31	10.56	7.99	3.22	18.41	15.05	10.63	4.09	9.05	7.53	11.05	8.46
Merged-chr3-86947627-3	chr3	86947521	86947721	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-26737.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	41.19	23.9	36.51	69.58	76.5	86.23	73.08	97.96	10.03	7.53	8.54	6.58
Merged-chr4-126533633-3	chr4	126533577	126533777	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	-219.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	6.86	5.28	9.13	4.42	9.82	12.23	4.98	9.28	13.18	4.52	13.57	6.27
Merged-chr6-91715227-3	chr6	91715115	91715315	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	31148.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	14.94	8.55	14.83	13.67	12.68	19.44	18.27	39.03	11.01	10.54	23.62	6.27
Merged-chr14-19705869-3	chr14	19705782	19705982	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45375.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	10.09	9.56	8.56	2.01	16.77	14.74	2.99	7.26	3.15	20.59	32.16	0.31
Merged-chr10-115816763-3	chr10	115816664	115816864	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-520.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	18.98	6.04	4.56	12.07	32.73	35.12	24.91	33.03	20.26	31.63	28.14	13.78
Merged-chr17-67405798-3	chr17	67405692	67405892	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51301.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	27.86	17.36	21.68	19.71	19.64	23.2	22.92	14.22	13.96	4.52	4.02	7.21
Merged-chr5-5365617-1	chr5	5365517	5365717	+	851.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	14634.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.81	1.51	0.0	0.8	0.0	0.0	0.66	0.0	21.83	19.08	11.56	10.34
Merged-chr10-3697691-1	chr10	3697591	3697791	+	851.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42686.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.81	0.0	0.0	0.0	1.64	0.31	2.66	2.3	12.0	3.51	22.61	7.83
Merged-chr8-13841575-3	chr8	13841497	13841697	+	851.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3508.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	10.5	6.54	13.69	12.07	17.59	12.23	11.29	16.6	13.18	6.53	13.57	10.65
Merged-chr16-17234227-2	chr16	17234127	17234327	+	851.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	640.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	8.48	7.04	8.56	22.52	12.68	8.47	21.26	10.49	15.34	15.06	11.56	11.28
Merged-chr7-123354537-3	chr7	123354425	123354625	+	851.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	15390.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	14.13	9.06	6.28	7.24	22.09	13.8	0.66	9.0	18.29	22.09	15.58	12.53
Merged-chr13-96435894-3	chr13	96435792	96435992	+	851.5610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001042714, exon 8 of 14)	exon (NM_001042714, exon 8 of 14)	35268.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	10.5	13.08	16.54	13.67	11.45	6.9	10.96	15.76	13.18	12.55	12.06	6.89
Merged-chr9-110783813-3	chr9	110783697	110783897	+	851.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14388.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	10.09	13.33	4.56	14.08	12.27	13.8	6.98	13.74	13.77	7.03	15.58	3.76
Merged-chr4-101355157-3	chr4	101355054	101355254	+	851.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	1094.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	8.88	7.55	9.7	9.65	10.64	15.68	3.32	10.07	13.96	15.06	4.52	12.53
Merged-chr9-54467735-3	chr9	54467644	54467844	+	851.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172771, intron 6 of 43)	L2a|LINE|L2	33882.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	10.09	7.29	6.85	0.0	17.18	27.91	9.97	14.89	14.95	11.55	13.57	5.64
Merged-chr5-74348617-2	chr5	74348461	74348661	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	153235.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	2.83	9.81	2.85	4.83	0.0	0.0	0.0	1.46	15.14	24.6	19.09	12.22
Merged-chr16-35844134-2	chr16	35844053	35844253	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 12 of 16)	intron (NM_001039530, intron 12 of 16)	27229.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.25	6.54	17.11	4.83	9.41	8.78	6.31	17.22	12.59	7.53	17.59	10.65
Merged-chr7-132304209-3	chr7	132304115	132304315	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	-11449.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	6.06	9.06	12.55	11.26	8.59	8.78	4.65	8.78	15.14	11.55	18.09	19.11
Merged-chr15-79720959-2	chr15	79720829	79721029	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013818, exon 12 of 12)	3' UTR (NM_013818, exon 12 of 12)	21607.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	9.29	9.81	4.56	8.45	11.86	1.88	3.32	9.22	6.1	9.04	11.56	4.07
Merged-chr11-95832067-2	chr11	95831950	95832150	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153104)	TTS (NM_153104)	7550.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	9.69	7.8	9.13	7.64	2.05	9.72	4.65	2.92	7.67	5.02	5.53	7.83
Merged-chr4-134759772-2	chr4	134759677	134759877	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	8227.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.85	7.29	5.7	4.83	9.0	15.37	14.95	14.52	11.6	14.56	10.05	8.46
Merged-chr2-118790831-1	chr2	118790731	118790931	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_170593, exon 8 of 8)	exon (NM_170593, exon 8 of 8)	11112.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	8.88	2.77	10.84	2.41	7.77	11.29	5.31	8.33	4.92	7.03	13.57	6.27
Merged-chr17-48558015-3	chr17	48557919	48558119	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103118.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	14.54	12.07	22.82	6.03	13.91	24.77	7.31	9.87	13.18	15.06	10.55	9.71
Merged-chr13-49225793-3	chr13	49225687	49225887	+	851.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9761.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	15.34	8.3	10.84	10.46	7.36	16.62	11.63	13.18	10.42	16.07	23.62	5.64
Merged-chr10-67643915-3	chr10	67643804	67644004	+	851.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71945.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	7.67	9.81	16.54	13.27	21.68	5.96	9.97	18.53	11.41	12.55	30.15	14.72
Merged-chr3-146445701-3	chr3	146445583	146445783	+	851.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-4784.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	7.27	11.32	9.7	16.09	19.23	18.81	20.26	19.46	12.39	12.55	20.6	10.34
Merged-chr16-10844218-3	chr16	10844136	10844336	+	851.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9177.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	9.29	12.83	22.82	12.87	6.95	6.9	11.63	14.3	9.44	9.04	16.08	7.21
Merged-chr14-66124477-3	chr14	66124396	66124596	+	851.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271402)	promoter-TSS (NM_001271402)	26.0	NM_001271402	13850.0	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	8.88	12.32	11.98	22.52	11.86	26.65	11.96	16.57	12.39	9.54	16.58	5.33
Merged-chr17-23925347-2	chr17	23925232	23925432	+	851.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7874.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	8.88	4.53	15.4	5.23	14.32	10.35	12.29	9.9	11.8	7.53	17.08	7.52
Merged-chr12-100106528-2	chr12	100106444	100106644	+	851.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5787.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.06	5.28	3.42	5.63	13.91	9.41	2.66	10.82	11.01	6.03	14.57	16.92
Merged-chr8-120486909-5	chr8	120486745	120486945	+	851.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2021.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	8.88	6.04	1.14	7.24	4.5	8.15	3.32	3.42	3.93	10.04	7.03	8.14
Merged-chr14-74939541-3	chr14	74939452	74939652	+	851.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	8325.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	18.17	12.83	25.1	13.27	8.18	7.84	3.99	6.28	20.65	11.55	9.55	6.89
Merged-chr1-144246634-3	chr1	144246572	144246772	+	851.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	2432.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	11.31	9.56	8.56	15.28	17.59	5.64	18.93	20.07	8.65	12.55	11.56	7.52
Merged-chr10-12884799-3	chr10	12884688	12884888	+	851.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-23053.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	12.11	6.79	21.11	18.5	8.18	7.53	15.94	18.39	11.6	10.04	28.14	5.33
Merged-chr17-88040966-2	chr17	88040886	88041086	+	851.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	23946.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	14.54	6.04	17.68	10.05	14.32	12.54	6.98	18.0	17.51	6.53	7.03	5.95
Merged-chr5-52138328-1	chr5	52138228	52138428	+	851.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2311.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	4.85	5.79	4.56	5.63	8.59	9.09	8.64	13.32	3.74	1.51	7.54	3.76
Merged-chr1-9772964-3	chr1	9772844	9773044	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24562.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	11.71	10.31	3.42	6.84	11.05	8.78	1.99	14.02	19.87	11.05	17.08	9.71
Merged-chr14-33813505-3	chr14	33813409	33813609	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2226.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	8.48	6.04	5.7	5.63	16.36	31.98	12.62	19.96	22.23	25.61	20.1	17.23
Merged-chr1-136416449-3	chr1	136416352	136416552	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	-933.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	9.29	1.76	18.25	6.44	9.82	16.62	8.97	14.58	9.44	7.53	23.11	15.66
Merged-chr15-42674946-1	chr15	42674846	42675046	+	851.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286062, intron 1 of 8)	LFSINE_Vert|SINE|tRNA	2031.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	7.27	11.07	9.13	4.83	13.5	11.6	1.99	6.08	4.13	4.02	4.02	1.57
Merged-chr16-33130916-3	chr16	33130812	33131012	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	25551.0	NR_035469	100316698.0		NR_035469	ENSMUSG00000088860	Mir1947	mir-1947|mmu-mir-1947	microRNA 1947	ncRNA	5.65	9.06	22.82	14.88	10.23	16.93	13.95	16.4	13.77	5.02	17.59	8.46
Merged-chr10-99616017-3	chr10	99615913	99616113	+	851.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	6842.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	11.31	8.05	17.11	11.26	7.77	10.98	2.33	10.6	18.49	13.56	30.15	9.71
Merged-chr4-132555775-3	chr4	132555672	132555872	+	851.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8295.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	13.33	10.56	14.83	10.46	11.45	26.34	7.97	7.88	23.21	12.55	22.61	12.22
Merged-chr11-21321776-3	chr11	21321686	21321886	+	851.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_139061)	TTS (NM_139061)	22889.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	8.08	7.8	14.83	8.85	18.41	21.64	13.29	27.03	19.08	26.11	13.06	9.08
Merged-chr10-17721754-3	chr10	17721690	17721890	+	851.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1438.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	11.31	7.55	5.13	7.24	14.32	12.23	20.26	15.22	13.37	19.58	10.55	10.65
Merged-chr11-118474060-3	chr11	118473967	118474167	+	851.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII|LTR|ERVK	-2765.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	11.71	9.56	9.13	3.22	14.32	14.42	5.65	11.58	29.11	16.57	28.64	12.53
Merged-chr4-133207015-3	chr4	133206886	133207086	+	851.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	5550.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	11.31	19.12	12.55	15.28	24.14	25.71	18.93	18.2	2.16	11.05	11.05	3.76
Merged-chr8-123750451-3	chr8	123750362	123750562	+	851.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16504.0	NR_040702	234863.0	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	16.15	11.32	11.41	2.41	11.05	43.27	27.57	12.62	10.42	12.05	17.59	2.82
Merged-chr1-13454754-2	chr1	13454664	13454864	+	851.216675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80681.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	8.08	3.02	4.56	14.48	13.09	6.9	8.64	15.17	17.31	20.08	13.57	11.59
Merged-chr11-115173643-2	chr11	115173531	115173731	+	851.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	10290.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.44	7.29	1.14	1.61	13.91	23.52	7.31	2.16	15.74	7.53	16.58	6.89
Merged-chr12-46710204-1	chr12	46710104	46710304	+	851.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021361, intron 4 of 4)	L2a|LINE|L2	108571.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.4	1.51	4.56	0.8	7.77	19.44	11.63	19.07	1.97	3.51	2.51	3.13
Merged-chr11-103021490-3	chr11	103021407	103021607	+	851.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4360.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	9.69	5.79	6.85	15.69	15.96	26.34	25.24	34.57	16.72	5.52	22.61	18.8
Merged-chr8-110619366-3	chr8	110619270	110619470	+	851.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	803.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	10.09	9.31	12.55	10.86	13.91	14.42	15.61	11.1	19.08	13.05	18.09	13.16
Merged-chr17-74341228-1	chr17	74341128	74341328	+	851.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357738, intron 1 of 15)	intron (NM_001357738, intron 1 of 15)	2241.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	2.83	1.76	0.0	4.02	1.64	1.25	2.33	0.84	11.8	16.07	25.12	8.77
Merged-chr13-113609527-3	chr13	113609370	113609570	+	851.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	L2a|LINE|L2	9094.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	15.75	9.31	19.4	2.41	8.18	19.44	1.33	3.34	9.44	23.6	7.54	0.31
Merged-chr2-146517082-2	chr2	146516968	146517168	+	851.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5064.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	2.83	2.77	14.83	5.63	7.77	10.98	9.97	9.95	24.39	14.06	25.12	10.65
Merged-chr2-79618331-2	chr2	79618225	79618425	+	851.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17100.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	11.31	9.31	13.69	16.49	27.82	10.03	8.3	18.64	2.95	5.52	6.53	2.82
Merged-chr5-115003475-2	chr5	115003388	115003588	+	851.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8036.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	6.86	9.81	11.98	5.63	24.14	27.91	8.97	19.35	10.62	16.07	3.52	4.07
Merged-chr9-120935252-4	chr9	120935166	120935366	+	851.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	1688.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	7.27	10.56	13.12	8.85	10.64	15.99	18.27	23.72	15.14	6.53	17.08	10.02
Merged-chr10-13323374-2	chr10	13323284	13323484	+	851.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	905.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.06	4.02	5.13	4.83	7.36	8.47	10.63	9.17	14.36	2.01	9.55	6.58
Merged-chr2-165445122-2	chr2	165445032	165445232	+	851.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054055, intron 3 of 12)	intron (NM_054055, intron 3 of 12)	28065.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	5.25	9.06	6.28	2.41	8.59	14.11	13.95	8.27	14.95	8.54	14.07	16.6
Merged-chr8-83131745-4	chr8	83131576	83131776	+	851.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33676.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.62	1.51	3.99	7.64	3.27	3.76	1.33	3.17	3.15	5.02	1.0	3.76
Merged-chr7-100932872-3	chr7	100932769	100932969	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081116)	promoter-TSS (NM_001081116)	-708.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	16.56	10.31	22.82	14.08	13.91	23.2	7.31	13.26	16.13	13.56	14.57	6.89
Merged-chr2-167685371-3	chr2	167685270	167685470	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3545.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	20.59	16.35	20.54	12.07	11.05	19.76	8.97	14.44	13.96	9.54	14.07	13.47
Merged-chr3-130079944-3	chr3	130079849	130080049	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19042.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	5.25	5.28	19.4	12.47	10.23	15.99	12.29	11.89	12.78	7.53	19.09	11.28
Merged-chr11-54808346-3	chr11	54808232	54808432	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11587.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	19.79	13.58	7.99	11.26	19.64	12.23	10.63	17.19	17.9	11.55	15.58	9.4
Merged-chr2-156253046-2	chr2	156252953	156253153	+	851.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 3 of 17)	intron (NM_172674, intron 3 of 17)	56406.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	17.77	12.07	23.39	25.74	1.64	1.25	1.0	0.36	11.8	13.05	16.08	10.96
Merged-chr1-36089659-2	chr1	36089574	36089774	+	851.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21274.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	12.11	4.78	2.85	4.83	7.36	9.72	15.61	18.36	10.42	19.08	8.04	11.28
Merged-chr1-64226244-3	chr1	64226118	64226318	+	851.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.27	7.8	17.68	2.01	8.59	26.03	19.6	9.76	22.62	17.07	21.1	5.64
Merged-chr2-94265692-3	chr2	94265583	94265783	+	851.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4284.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	8.08	6.29	11.98	19.31	17.59	10.98	15.94	22.15	14.36	6.03	20.6	17.54
Merged-chr6-29474691-3	chr6	29474572	29474772	+	851.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3235.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	13.73	9.31	6.28	12.47	8.59	15.05	12.29	21.87	12.0	19.08	19.6	18.8
Merged-chr14-75069665-5	chr14	75069555	75069755	+	851.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	53628.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.65	6.04	6.28	8.04	8.59	7.84	5.65	5.86	4.92	4.52	8.54	7.83
Merged-chrX-73007694-1	chrX	73007594	73007794	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109043, intron 12 of 18)	intron (NM_001109043, intron 12 of 18)	15615.0	NR_035517	100316779.0		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	4.44	2.52	9.7	6.84	4.91	9.09	10.63	8.41	5.11	7.03	12.06	5.64
Merged-chr9-41950895-1	chr9	41950795	41950995	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	126318.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	7.27	6.29	1.14	1.61	8.59	12.23	10.63	8.47	2.16	3.51	12.06	3.13
Merged-chr8-122111142-1	chr8	122111042	122111242	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133118.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	2.42	2.52	3.99	2.01	2.45	6.9	13.29	10.09	0.2	0.0	2.51	0.31
Merged-chr1-138840175-1	chr1	138840075	138840275	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025565, intron 1 of 4)	intron (NM_001025565, intron 1 of 4)	2269.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	3.23	6.04	0.0	6.84	2.45	4.08	5.65	10.54	2.56	3.51	9.04	0.31
Merged-chr6-114869665-1	chr6	114869565	114869765	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	52156.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	2.42	2.77	0.0	0.8	5.32	4.7	7.97	6.03	3.34	0.5	2.01	5.95
Merged-chr4-133109414-3	chr4	133109313	133109513	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-21220.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	48.86	55.84	57.05	37.81	49.5	58.95	34.21	42.22	9.24	7.53	4.52	6.58
Merged-chr2-121885673-3	chr2	121885559	121885759	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205371, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	17954.0	NM_001205371	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	24.23	14.34	29.66	11.26	13.09	19.44	17.61	18.0	8.85	9.04	11.56	13.78
Merged-chr7-55847821-2	chr7	55847717	55847917	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	5746.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	13.33	5.03	6.28	6.03	5.32	12.23	6.64	10.85	10.62	7.53	13.57	4.39
Merged-chr8-111636485-1	chr8	111636385	111636585	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-6163.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	3.63	3.77	4.56	7.24	4.91	20.07	6.98	10.09	5.11	7.53	10.55	6.27
Merged-chr5-142908213-3	chr5	142908171	142908371	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1517.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	8.48	10.31	9.7	6.44	9.82	22.26	3.32	4.43	16.13	19.58	13.06	13.78
Merged-chr14-73401325-3	chr14	73401217	73401417	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16028.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	9.29	4.78	15.4	7.24	13.5	8.15	12.62	21.79	12.39	25.11	19.6	11.28
Merged-chr4-12500759-2	chr4	12500644	12500844	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-328729.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.44	2.01	0.57	0.8	12.68	19.13	4.98	10.88	14.36	11.55	16.58	5.33
Merged-chr1-131020312-1	chr1	131020212	131020412	+	851.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	467.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	7.67	0.25	3.99	0.0	0.0	9.41	2.66	1.65	10.82	6.03	13.57	4.39
Merged-chr6-48539554-2	chr6	48539462	48539662	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347164, intron 2 of 2)	intron (NM_001347164, intron 2 of 2)	1993.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	7.27	4.28	2.28	2.41	4.91	7.53	3.99	3.67	26.36	24.6	31.15	16.6
Merged-chr13-10220673-2	chr13	10220564	10220764	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	140139.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	4.85	3.77	13.69	11.26	3.68	2.82	9.97	8.72	10.03	5.02	8.04	5.33
Merged-chr13-73445696-2	chr13	73445606	73445806	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-21677.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.65	11.07	1.14	7.64	10.23	9.72	3.32	7.46	9.64	7.53	14.07	1.57
Merged-chr15-38342950-1	chr15	38342850	38343050	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42239.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.63	2.01	4.56	0.8	2.45	1.25	5.98	7.21	5.31	7.03	7.54	8.77
Merged-chr7-6359369-1	chr7	6359269	6359469	+	851.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3939.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	6.46	4.78	11.98	3.22	4.09	4.39	1.66	7.68	16.52	12.55	7.03	5.95
Merged-chr15-30622349-1	chr15	30622249	30622449	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-416777.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.04	3.27	1.71	8.45	3.68	5.33	4.98	8.36	4.13	3.51	12.06	0.94
Merged-chr3-95739561-3	chr3	95739474	95739674	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-5.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	10.09	7.04	1.71	5.63	18.82	17.56	16.94	15.62	12.59	11.55	26.13	5.95
Merged-chr12-80279640-3	chr12	80279543	80279743	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19262.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	16.96	8.8	12.55	9.25	16.36	13.48	8.97	19.79	23.6	15.57	21.61	14.1
Merged-chr3-152557740-1	chr3	152557640	152557840	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-109173.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	1.62	3.27	1.14	2.41	3.27	3.76	2.99	8.75	0.2	0.0	0.5	1.57
Merged-chr8-23035441-3	chr8	23035350	23035550	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	351.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	6.06	5.03	7.99	13.67	4.09	4.39	11.29	13.68	19.28	31.13	22.61	21.62
Merged-chr16-49045864-1	chr16	49045764	49045964	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11622.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	7.67	3.52	5.7	8.04	9.0	4.39	1.66	6.2	5.31	3.01	18.09	4.39
Merged-chr12-86884207-3	chr12	86884109	86884309	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145836, exon 1 of 1)	5' UTR (NM_145836, exon 1 of 1)	605.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	14.94	18.11	13.12	10.46	9.0	13.48	9.3	12.7	14.95	17.07	15.58	11.9
Merged-chr11-80429199-2	chr11	80429088	80429288	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178616, intron 1 of 13)	CpG	573.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	8.88	14.34	6.28	12.87	13.91	19.44	11.63	7.99	10.42	5.02	10.05	10.96
Merged-chr10-15189439-2	chr10	15189345	15189545	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	429156.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	6.46	7.55	11.41	33.38	29.46	15.05	20.59	46.96	6.1	4.52	13.57	3.45
Merged-chr17-86677089-1	chr17	86676989	86677189	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76775.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.23	0.5	1.14	0.8	9.0	9.41	9.97	12.9	4.92	8.03	2.51	3.13
Merged-chr10-14045254-1	chr10	14045154	14045354	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	78875.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.23	4.28	2.85	7.24	4.09	10.66	3.99	7.79	5.9	7.03	9.04	5.95
Merged-chrX-167319002-3	chrX	167318932	167319132	+	850.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	MLT1J-int|LTR|ERVL-MaLR	11539.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	7.67	14.34	11.98	12.07	13.09	10.35	16.28	17.41	12.59	12.55	16.58	12.84
Merged-chr3-19310228-3	chr3	19310151	19310351	+	850.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1071.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	8.08	7.04	14.26	12.87	10.23	10.98	8.97	18.03	12.19	7.53	18.09	1.25
Merged-chr11-68483396-3	chr11	68483313	68483513	+	850.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-19606.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	21.8	15.34	11.41	12.47	29.05	14.11	6.64	13.54	6.88	13.56	11.05	3.76
Merged-chr7-126797911-3	chr7	126797747	126797947	+	850.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177308, intron 1 of 8)	intron (NM_001177308, intron 1 of 8)	1331.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	13.73	10.06	16.54	8.04	7.36	13.48	9.3	9.36	11.41	9.54	13.06	8.77
Merged-chr1-152913834-3	chr1	152913737	152913937	+	850.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11191.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.08	8.55	16.54	10.46	9.82	6.27	7.64	11.16	18.69	6.03	7.54	13.78
Merged-chr18-75820212-3	chr18	75820104	75820304	+	850.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	26.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	10.9	6.29	13.69	12.07	11.05	21.64	10.96	25.29	22.82	12.05	31.15	16.92
Merged-chr17-31139682-2	chr17	31139583	31139783	+	850.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	4599.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	7.67	2.52	9.7	12.47	11.86	10.66	9.3	8.92	20.46	12.05	7.54	11.59
Merged-chr17-74123189-2	chr17	74123098	74123298	+	850.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75282.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	1.62	0.0	2.28	0.8	8.18	18.81	4.65	17.36	19.87	12.55	18.09	22.24
Merged-chr14-30695802-3	chr14	30695700	30695900	+	850.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19049.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	10.09	11.32	16.54	16.49	15.14	22.89	10.63	15.84	13.77	7.03	10.55	10.65
Merged-chr14-79397959-3	chr14	79397859	79398059	+	850.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145960, exon 1 of 11)	5' UTR (NM_145960, exon 1 of 11)	187.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	4.85	9.31	6.85	17.7	14.32	12.23	14.62	12.84	13.37	14.56	13.06	13.16
Merged-chr19-5842492-3	chr19	5842411	5842611	+	850.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2967.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	25.44	11.57	10.84	13.67	12.68	8.15	15.28	7.68	10.82	9.54	17.08	7.83
Merged-chr6-22391121-3	chr6	22390925	22391125	+	850.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34944.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.85	3.77	8.56	5.63	4.09	4.39	6.98	3.56	3.74	4.02	10.55	7.83
Merged-chr11-32537326-2	chr11	32537227	32537427	+	850.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	4061.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.65	2.52	4.56	3.62	3.68	14.74	9.97	7.29	11.21	7.03	5.53	5.95
Merged-chr8-122938781-2	chr8	122938685	122938885	+	850.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	90411.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	10.9	4.02	17.11	14.08	22.5	4.08	5.98	15.81	6.29	8.03	12.06	5.64
Merged-chr18-12936955-2	chr18	12936867	12937067	+	850.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	RMER6B|LTR|ERVK	4874.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.23	3.77	4.56	10.46	12.27	10.66	7.97	18.93	13.57	6.03	12.56	3.45
Merged-chr13-104095001-1	chr13	104094901	104095101	+	850.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029447, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	14613.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	2.02	1.01	2.28	4.42	11.05	10.98	18.27	11.75	5.11	5.52	4.02	1.57
Merged-chr17-48270907-3	chr17	48270804	48271004	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	6609.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	8.88	15.34	11.41	10.86	5.73	18.5	11.96	9.25	11.01	12.05	10.05	3.76
Merged-chr5-105409273-3	chr5	105409165	105409365	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6510.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	9.69	5.53	11.41	10.05	13.09	12.23	9.63	11.27	14.36	11.55	24.62	13.47
Merged-chr2-18992791-1	chr2	18992691	18992891	+	850.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	RLTR12G|LTR|ERVK	5330.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.44	5.03	4.56	4.02	10.64	15.37	4.65	5.47	6.88	10.04	5.02	5.64
Merged-chr2-178078431-1	chr2	178078331	178078531	+	850.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162922)	promoter-TSS (NM_001162922)	-6.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	5.25	4.02	9.7	4.83	9.0	12.23	19.93	0.0	4.33	9.54	8.04	4.39
Merged-chr11-52043415-3	chr11	52043317	52043517	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	39196.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	10.09	14.59	16.54	15.28	18.82	11.6	3.65	18.08	16.13	11.05	13.57	15.66
Merged-chr2-24970577-1	chr2	24970477	24970677	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355561, intron 7 of 7)	intron (NM_001355561, intron 7 of 7)	4521.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	8.48	19.37	18.25	10.46	1.64	0.31	3.32	3.48	3.34	6.03	13.57	2.51
Merged-chr11-114226775-3	chr11	114226676	114226876	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28518.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	2.02	10.06	7.42	3.22	27.0	23.52	24.91	24.22	83.79	43.68	80.9	74.87
Merged-chr4-48100407-3	chr4	48100312	48100512	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24507.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	15.75	8.8	7.99	15.69	20.46	15.99	10.63	13.71	11.6	13.56	27.13	10.02
Merged-chr17-8232304-2	chr17	8232204	8232404	+	850.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3739.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	14.94	13.83	38.22	7.64	12.68	8.47	5.98	8.41	2.75	3.01	11.56	4.39
Merged-chr4-6227244-3	chr4	6227141	6227341	+	850.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	36136.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	7.67	7.29	9.7	11.26	14.73	10.03	17.94	14.13	32.26	26.61	33.67	19.74
Merged-chr10-60282259-3	chr10	60282192	60282392	+	850.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2169.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	10.09	5.79	9.13	12.47	12.68	7.84	8.64	16.74	26.75	12.55	22.11	15.04
Merged-chr11-75168185-3	chr11	75168048	75168248	+	850.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	4.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.06	10.06	13.69	6.44	5.32	4.39	16.94	8.92	14.75	12.55	20.6	11.9
Merged-chr7-135522237-1	chr7	135522137	135522337	+	850.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	6417.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	6.06	4.02	6.28	0.0	8.18	11.92	12.95	16.93	5.31	4.52	3.52	4.7
Merged-chr6-39527936-3	chr6	39527809	39528009	+	850.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	29925.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	7.67	8.3	13.12	12.07	20.86	22.58	10.3	16.29	30.09	18.58	14.57	7.21
Merged-chr3-82800615-2	chr3	82800514	82800714	+	850.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75869.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	4.85	2.01	27.95	8.04	13.09	12.54	23.58	27.53	8.85	14.06	16.58	9.4
Merged-chr12-70695246-2	chr12	70695143	70695343	+	850.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130271.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	4.04	2.52	10.27	5.23	12.68	23.52	9.63	15.53	1.57	15.06	17.08	4.07
Merged-chr10-120980369-2	chr10	120980278	120980478	+	850.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	9.29	17.86	7.99	6.44	15.55	21.64	9.63	6.64	11.41	17.57	16.58	5.01
Merged-chr9-123808751-3	chr9	123808639	123808839	+	850.5610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030712, intron 1 of 1)	intron (NM_030712, intron 1 of 1)	2262.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	10.9	13.58	8.56	13.67	19.23	9.72	9.97	13.91	18.1	24.1	30.15	7.83
Merged-chr11-74547346-5	chr11	74547247	74547447	+	850.5599980000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42811.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	8.48	9.56	3.42	12.87	6.14	5.96	8.97	6.45	12.39	10.04	12.06	3.45
Merged-chr2-153174498-3	chr2	153174420	153174620	+	850.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	13219.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.85	12.58	3.99	9.25	18.0	17.87	7.97	9.36	18.29	16.07	10.05	10.34
Merged-chr12-79319502-3	chr12	79319388	79319588	+	850.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 5 of 10)	L1MEc|LINE|L1	22137.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	7.67	20.12	14.26	10.05	14.32	26.65	9.63	16.51	23.41	29.12	30.15	12.84
Merged-chr12-40447271-2	chr12	40447177	40447377	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1224.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	13.33	9.56	13.12	11.66	8.18	12.23	2.33	8.1	15.14	12.55	14.07	10.65
Merged-chr10-126330719-1	chr10	126330619	126330819	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	364500.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	5.25	3.02	0.0	10.46	11.86	10.35	6.64	25.18	1.57	1.51	1.0	2.51
Merged-chr10-59969925-3	chr10	59969823	59970023	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18153.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	7.67	5.28	10.27	10.05	11.86	12.86	14.28	7.99	9.83	14.56	20.6	12.84
Merged-chr3-105705324-1	chr3	105705224	105705424	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	-134.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	6.46	7.04	5.7	5.63	9.0	5.64	2.99	7.49	5.7	1.51	6.53	3.76
Merged-chr2-102827946-2	chr2	102827861	102828061	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 11 of 13)	MTC|LTR|ERVL-MaLR	73704.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.44	2.52	3.99	1.21	4.5	3.76	7.64	5.52	16.33	19.08	6.53	4.07
Merged-chr18-38339527-1	chr18	38339427	38339627	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-534.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.46	3.77	7.42	9.65	6.95	11.92	7.31	13.49	11.8	8.54	4.02	4.07
Merged-chr6-108723461-1	chr6	108723361	108723561	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59598.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	1.21	5.53	7.42	6.03	8.59	9.09	15.28	20.83	1.57	2.01	1.51	0.94
Merged-chrX-159974715-1	chrX	159974615	159974815	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_110969, exon 17 of 17)	non-coding (NR_110969, exon 17 of 17)	-13718.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	3.23	6.04	8.56	3.22	9.82	10.35	16.28	7.54	6.49	6.53	7.03	10.96
Merged-chr2-59245045-1	chr2	59244945	59245145	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	84195.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.65	2.01	9.7	6.44	10.23	10.35	4.98	16.49	3.34	17.07	9.55	7.52
Merged-chr7-91740954-2	chr7	91740861	91741061	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 3 of 22)	MTD|LTR|ERVL-MaLR	-321433.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	6.46	6.54	14.26	19.31	2.45	3.45	12.62	7.15	2.16	0.0	7.54	0.63
Merged-chr10-61696135-2	chr10	61696129	61696329	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	643.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	4.04	6.79	3.42	2.82	4.91	5.64	5.98	3.59	3.34	4.52	9.04	9.71
Merged-chr15-98708157-3	chr15	98708057	98708257	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153518)	promoter-TSS (NM_153518)	-70.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	15.34	17.36	11.41	8.85	11.45	22.26	3.32	8.38	23.8	17.57	19.09	7.83
Merged-chr4-72319340-2	chr4	72319240	72319440	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	118096.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	18.17	9.56	21.68	18.1	4.91	5.64	7.97	10.21	14.36	7.53	9.55	6.89
Merged-chr1-136579524-2	chr1	136579414	136579614	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45387.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.04	3.77	2.85	2.41	4.09	3.45	2.66	2.41	3.74	7.03	0.0	4.7
Merged-chr17-88107794-1	chr17	88107694	88107894	+	850.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-17718.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	1.62	3.77	7.99	3.22	3.27	5.33	4.65	3.25	12.59	7.03	19.6	4.07
Merged-chr18-32441420-1	chr18	32441320	32441520	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63136.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	6.46	5.79	6.28	3.22	6.95	9.72	1.66	8.41	8.26	8.54	4.52	5.95
Merged-chr15-77236201-1	chr15	77236101	77236301	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	9407.0	NM_001358772	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	1.62	3.02	0.57	1.61	6.55	10.98	3.99	8.66	7.47	1.51	5.02	3.45
Merged-chr10-75710408-3	chr10	75710324	75710524	+	850.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	53933.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	12.52	11.82	9.13	12.47	9.82	7.84	8.97	17.47	12.78	7.53	37.18	15.66
Merged-chr6-52488018-3	chr6	52487920	52488120	+	850.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4431.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	13.33	7.04	15.4	20.11	14.32	13.8	13.29	19.65	12.19	8.54	19.09	6.89
Merged-chr9-88719432-4	chr9	88719414	88719614	+	850.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359992)	promoter-TSS (NM_001359992)	73.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	14.54	10.56	3.42	17.29	5.73	9.09	8.97	7.68	12.98	7.53	16.08	6.58
Merged-chr6-32610871-2	chr6	32610762	32610962	+	850.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22670.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	1.62	2.77	1.14	5.63	5.73	9.41	5.31	8.44	16.92	11.05	20.6	9.4
Merged-chr11-103980239-2	chr11	103980170	103980370	+	850.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	13399.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	3.63	4.53	12.55	4.02	7.77	12.86	17.61	20.36	10.03	9.04	4.52	6.89
Merged-chr13-110585225-1	chr13	110585125	110585325	+	850.400024	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	190181.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	9.29	13.83	20.54	27.75	0.0	0.0	1.33	0.0	0.0	0.0	2.51	0.94
Merged-chr16-35490829-3	chr16	35490727	35490927	+	850.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028295)	promoter-TSS (NM_028295)	46.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	10.5	8.05	15.4	17.29	17.18	6.27	5.31	20.97	12.78	11.05	22.11	16.29
Merged-chr8-122405262-3	chr8	122405155	122405355	+	850.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029993, intron 9 of 18)	intron (NM_001029993, intron 9 of 18)	-16765.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	16.15	18.61	13.12	4.83	5.32	20.7	13.29	9.11	10.03	14.56	24.62	4.7
Merged-chr5-118477852-3	chr5	118477752	118477952	+	850.3388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82867.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	29.07	22.39	12.55	10.86	29.05	48.92	12.95	10.49	33.63	38.16	18.59	6.89
Merged-chr1-39585614-2	chr1	39585486	39585686	+	850.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-8239.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	10.5	5.79	10.27	14.08	2.45	4.39	9.63	8.72	6.49	6.03	11.05	1.25
Merged-chr1-43467131-2	chr1	43467024	43467224	+	850.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	21373.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.63	1.51	9.13	5.23	8.18	13.48	9.3	13.21	18.69	14.56	6.03	6.58
Merged-chr11-89021597-2	chr11	89021490	89021690	+	850.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22187.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.65	9.06	16.54	9.65	37.23	15.37	21.26	29.33	5.31	8.03	7.54	1.88
Merged-chr1-122357216-2	chr1	122357116	122357316	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	152071.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	43.21	28.93	27.95	32.18	9.41	11.92	8.97	7.57	19.28	14.56	25.12	21.3
Merged-chr2-128422830-3	chr2	128422748	128422948	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	B3A|SINE|B2	6503.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	13.33	18.11	9.13	8.85	14.32	18.19	8.3	6.73	30.29	16.57	21.1	13.16
Merged-chr3-109439500-1	chr3	109439400	109439600	+	850.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	98817.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.23	3.52	17.11	2.82	12.68	6.27	6.31	11.86	3.74	1.51	11.56	2.82
Merged-chr8-37011871-3	chr8	37011776	37011976	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126063, intron 1 of 2)	intron (NR_126063, intron 1 of 2)	12362.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	13.73	4.28	14.83	28.96	28.23	10.66	18.27	31.54	11.6	4.02	30.65	9.08
Merged-chr10-94638797-3	chr10	94638700	94638900	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49813.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	12.92	14.84	15.97	7.64	15.14	14.11	16.94	17.05	9.44	8.03	11.56	5.33
Merged-chr3-101377057-1	chr3	101376957	101377157	+	850.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207205)	promoter-TSS (NM_207205)	-68.0	NM_207205	78908.0	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	8.08	6.04	6.28	8.04	13.09	14.11	7.31	8.92	5.11	2.51	6.53	4.07
Merged-chr18-20787228-3	chr18	20787130	20787330	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40826.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.85	6.54	14.26	12.87	23.32	27.28	45.51	40.54	10.03	15.06	29.14	12.22
Merged-chr2-51001104-1	chr2	51001004	51001204	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	91420.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.85	13.33	17.11	12.07	0.0	0.0	0.0	0.48	0.0	0.0	0.5	0.0
Merged-chr7-127717184-3	chr7	127717079	127717279	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001301283, exon 3 of 3)	exon (NM_001301283, exon 3 of 3)	4242.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	18.98	15.09	1.71	10.05	17.59	32.3	8.64	19.57	23.01	19.08	13.57	8.14
Merged-chr15-79400352-3	chr15	79400257	79400457	+	850.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	2562.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	12.92	13.08	9.7	15.69	18.41	15.99	5.31	9.7	14.16	11.55	10.05	11.28
Merged-chr7-139208220-3	chr7	139208108	139208308	+	850.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-4780.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	11.71	6.79	22.25	5.63	13.09	12.86	7.97	13.93	20.26	18.08	17.59	14.41
Merged-chr1-162665735-3	chr1	162665651	162665851	+	850.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7532.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	11.71	5.28	18.25	20.11	15.14	19.13	22.92	29.41	9.44	19.08	28.14	10.65
Merged-chr10-79670456-3	chr10	79670337	79670537	+	850.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	1027.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	6.86	7.55	11.98	7.64	11.05	7.53	9.3	6.9	9.64	9.54	13.06	12.84
Merged-chr4-62407979-3	chr4	62407850	62408050	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	673.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	7.27	7.29	11.41	5.23	11.05	5.64	13.95	13.82	20.46	27.62	18.09	13.16
Merged-chr8-120437466-3	chr8	120437353	120437553	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51413.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	13.73	20.37	17.68	10.46	9.0	23.52	8.3	12.14	22.42	10.54	14.07	11.9
Merged-chr7-118118583-3	chr7	118118498	118118698	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019419)	TTS (NM_019419)	-2451.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	14.94	3.52	19.4	8.04	24.96	16.93	17.61	30.7	28.13	10.54	30.65	18.17
Merged-chr10-20349106-3	chr10	20349012	20349212	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1293.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	9.69	12.32	11.98	18.9	11.05	11.29	6.98	16.01	87.53	95.9	99.99	59.83
Merged-chr3-108609096-3	chr3	108608992	108609192	+	850.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358055, intron 1 of 14)	Lx7|LINE|L1	17359.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	19.38	11.32	8.56	16.89	20.86	17.25	7.31	16.91	11.21	16.07	26.63	8.46
Merged-chr18-61229836-2	chr18	61229735	61229935	+	850.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	9336.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.81	9.56	25.67	8.85	2.45	2.51	5.98	4.4	14.75	8.03	12.56	15.98
Merged-chr2-112490338-1	chr2	112490238	112490438	+	850.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2626.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	2.83	2.77	0.57	4.02	15.14	12.23	5.98	8.36	7.47	10.04	1.0	6.89
Merged-chr9-77733949-3	chr9	77733846	77734046	+	850.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-20589.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	9.29	13.08	13.69	10.86	15.14	11.29	11.29	19.96	14.95	14.56	21.1	7.52
Merged-chr5-3387371-3	chr5	3387265	3387465	+	850.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	43472.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.65	9.81	13.12	11.66	25.77	25.71	18.93	34.46	12.59	23.6	11.05	14.72
Merged-chr2-38950572-3	chr2	38950472	38950672	+	850.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172854, intron 4 of 7)	intron (NM_172854, intron 4 of 7)	18592.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	10.9	5.53	4.56	6.03	41.73	20.38	49.16	58.01	29.11	19.08	45.22	12.53
Merged-chr1-23555980-3	chr1	23555876	23556076	+	850.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18611.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	9.69	11.07	22.82	18.5	12.68	14.11	13.62	13.04	14.16	8.54	15.58	5.64
Merged-chr15-77610410-1	chr15	77610310	77610510	+	850.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A|LTR|ERVK	-14285.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	3.63	1.26	2.28	2.41	0.82	4.7	2.33	2.58	15.14	15.57	17.59	8.14
Merged-chr6-116472770-3	chr6	116472684	116472884	+	850.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11606.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	16.96	5.28	6.85	14.08	14.32	6.59	12.29	11.1	9.83	15.06	15.58	6.89
Merged-chr2-117314012-3	chr2	117313907	117314107	+	850.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	28870.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	11.71	7.8	6.85	17.29	11.05	17.25	5.31	11.44	28.72	6.03	26.63	10.65
Merged-chr4-115835755-3	chr4	115835661	115835861	+	850.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175308, exon 4 of 4)	3' UTR (NM_175308, exon 4 of 4)	-3437.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	4.85	8.55	7.42	15.28	6.95	11.29	11.29	13.04	14.16	5.02	17.59	10.02
Merged-chr17-47368879-3	chr17	47368786	47368986	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146212)	promoter-TSS (NM_001146212)	-1.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	12.11	9.81	9.7	2.82	8.59	10.03	4.32	9.73	13.57	10.04	26.63	6.89
Merged-chr3-116053514-3	chr3	116053429	116053629	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45232.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	14.13	4.78	13.69	11.66	8.59	12.54	10.63	15.79	14.16	5.52	16.58	4.7
Merged-chr7-104300086-1	chr7	104299986	104300186	+	850.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023835, exon 8 of 8)	3' UTR (NM_023835, exon 8 of 8)	-11980.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.44	13.05	12.56	12.22
Merged-chr9-122138864-3	chr9	122138753	122138953	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357775, intron 4 of 7)	L1M5|LINE|L1	21394.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	10.5	9.31	9.13	9.65	34.36	23.2	14.62	18.56	14.16	18.58	12.06	19.11
Merged-chr9-90261534-2	chr9	90261446	90261646	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9223.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	12.52	12.58	19.97	7.24	4.09	9.41	2.66	1.6	14.75	14.06	13.57	3.13
Merged-chr5-146947725-1	chr5	146947625	146947825	+	850.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-932.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	0.5	0.0	0.0	0.82	0.0	0.33	0.81	16.13	16.57	25.63	7.52
Merged-chr8-19161732-3	chr8	19161641	19161841	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3854.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	8.08	10.06	3.42	10.46	18.0	18.5	13.62	15.7	15.74	17.07	24.12	6.27
Merged-chr14-86678516-2	chr14	86678419	86678619	+	850.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	432549.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	8.48	11.82	10.84	15.28	13.09	2.82	6.64	14.47	1.57	2.01	3.52	0.94
Merged-chr6-86497447-4	chr6	86497331	86497531	+	850.1597289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9204.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	8.48	13.33	9.13	4.83	13.5	16.93	6.98	10.85	16.33	12.55	8.54	6.89
Merged-chr13-23577114-3	chr13	23576980	23577180	+	850.158325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178204)	TTS (NM_178204)	1317.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	7.67	2.26	6.28	5.63	5.73	3.14	1.0	2.27	1.77	9.54	6.53	6.58
Merged-chr8-46765071-6	chr8	46765020	46765220	+	850.1527710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	25375.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	16.15	22.89	21.11	15.28	24.55	16.93	10.3	11.86	23.41	23.6	10.05	12.53
Merged-chr13-100195637-2	chr13	100195541	100195741	+	850.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 2 of 15)	intron (NM_001126182, intron 2 of 15)	6481.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	6.86	5.03	14.83	8.85	15.14	11.92	6.31	15.59	9.83	15.57	30.15	11.59
Merged-chr10-6694682-3	chr10	6694582	6694782	+	850.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63911.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	10.09	4.28	8.56	7.24	7.77	10.03	5.31	13.85	19.87	19.08	15.07	9.71
Merged-chr7-114291648-3	chr7	114291579	114291779	+	850.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15563.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	16.15	7.04	6.85	13.27	11.45	10.35	12.29	9.67	9.44	10.54	16.08	14.1
Merged-chr8-90933167-3	chr8	90933062	90933262	+	850.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310530, exon 1 of 38)	exon (NM_001310530, exon 1 of 38)	913.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	13.33	13.08	7.42	20.91	20.86	11.6	17.27	17.05	10.03	14.06	14.07	8.46
Merged-chr11-75053185-3	chr11	75053078	75053278	+	850.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	12813.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	9.69	8.8	13.12	4.02	18.82	30.1	30.56	16.15	23.41	12.55	14.07	6.89
Merged-chr6-85346392-3	chr6	85346302	85346502	+	850.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003955, intron 3 of 5)	intron (NM_001003955, intron 3 of 5)	-10029.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	9.69	12.83	9.13	9.25	7.36	12.54	11.96	12.25	12.19	15.06	27.13	17.86
Merged-chr2-78580236-3	chr2	78580133	78580333	+	850.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-288814.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	8.08	11.07	5.7	11.26	25.77	47.98	26.91	60.17	10.62	19.08	27.64	14.41
Merged-chr7-97029347-3	chr7	97029234	97029434	+	850.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-52417.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	13.73	9.31	27.95	9.65	24.55	21.01	26.91	24.31	20.06	25.11	28.14	8.77
Merged-chr15-27671795-3	chr15	27671715	27671915	+	850.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9727.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	10.09	8.3	12.55	8.04	12.27	13.17	14.62	13.77	16.92	22.59	15.07	9.4
Merged-chr4-109360896-1	chr4	109360796	109360996	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007943, intron 13 of 24)	intron (NM_007943, intron 13 of 24)	17840.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	4.85	3.02	7.42	9.65	9.82	3.14	7.64	9.39	7.28	2.01	14.57	5.01
Merged-chr1-183917145-2	chr1	183917044	183917244	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116854.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	2.42	1.51	4.56	6.03	2.86	1.88	14.28	16.71	8.46	4.52	21.1	8.77
Merged-chr9-20897431-1	chr9	20897331	20897531	+	850.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016876, intron 5 of 10)	B4A|SINE|B4	1159.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	4.44	3.27	7.99	2.82	4.09	3.76	2.66	6.39	3.74	14.56	18.59	4.7
Merged-chr14-30597395-1	chr14	30597295	30597495	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	12915.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.85	5.03	1.14	4.83	14.32	2.51	1.66	7.32	1.38	2.51	5.02	2.51
Merged-chr9-49050235-1	chr9	49050135	49050335	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-5346.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	4.04	0.5	1.14	4.02	4.09	5.02	6.31	8.19	1.18	2.01	0.0	2.51
Merged-chr8-116275748-2	chr8	116275640	116275840	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-229275.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	5.65	4.53	5.7	1.21	6.14	3.14	10.3	8.47	13.18	10.54	15.07	0.94
Merged-chr5-105649916-2	chr5	105649823	105650023	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50046.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.83	1.51	5.13	0.8	8.59	7.21	1.66	4.65	15.54	19.08	32.66	23.18
Merged-chr6-131264368-2	chr6	131264274	131264474	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17012.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	4.85	6.79	11.41	8.85	7.36	5.64	6.64	10.4	7.08	13.05	17.59	18.48
Merged-chr15-41790796-1	chr15	41790696	41790896	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130163, intron 1 of 13)	intron (NM_001130163, intron 1 of 13)	1281.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.42	2.01	5.13	1.61	4.09	3.45	6.64	6.93	1.77	3.51	7.54	2.19
Merged-chr19-3322745-1	chr19	3322645	3322845	+	850.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-556.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	14.13	6.54	10.84	6.03	9.0	7.21	3.32	5.47	13.18	7.03	11.05	5.33
Merged-chr15-86180567-1	chr15	86180467	86180667	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-5161.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.63	2.01	6.28	6.84	8.18	5.33	2.33	9.11	3.34	7.03	5.02	3.45
Merged-chr4-101132816-1	chr4	101132716	101132916	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183024, intron 6 of 11)	intron (NM_183024, intron 6 of 11)	63778.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.23	4.78	6.85	4.83	4.09	6.59	10.3	13.21	4.92	1.0	5.02	4.39
Merged-chr17-79663611-1	chr17	79663511	79663711	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	48711.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	4.44	3.02	5.7	7.64	12.27	11.6	10.63	17.44	7.67	2.51	10.05	5.33
Merged-chr12-76405571-1	chr12	76405471	76405671	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1201.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	4.44	0.5	1.14	5.23	2.05	1.88	4.32	6.14	2.56	9.04	5.02	6.89
Merged-chr9-15717648-1	chr9	15717548	15717748	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	7910.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	1.62	3.77	7.42	7.64	8.18	5.64	12.95	10.32	7.08	4.52	6.03	8.46
Merged-chr5-142458923-1	chr5	142458823	142459023	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5008.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	8.08	9.81	5.7	2.01	11.86	13.48	11.29	6.22	15.74	8.03	8.04	1.25
Merged-chr16-92336578-1	chr16	92336478	92336678	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15137.0	NM_029252	75328.0	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	5.65	7.8	0.0	0.8	0.82	8.15	1.33	6.98	3.54	0.5	9.55	2.82
Merged-chr15-73748290-3	chr15	73748195	73748395	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	269.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	11.71	8.05	8.56	4.02	16.77	9.72	9.97	11.97	12.59	11.55	4.52	6.58
Merged-chr15-53558164-3	chr15	53558048	53558248	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	56131.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	38.36	30.18	40.5	55.1	10.23	3.76	1.66	11.61	21.24	12.05	6.03	13.47
Merged-chr6-120112054-2	chr6	120111967	120112167	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18687.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	7.27	8.55	11.41	3.22	10.23	16.31	11.29	6.7	12.98	12.05	6.53	0.63
Merged-chr19-48063510-3	chr19	48063405	48063605	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125793.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	7.67	2.01	6.28	14.88	19.64	15.68	38.53	55.23	4.33	7.03	20.6	19.11
Merged-chr14-79548472-1	chr14	79548372	79548572	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	32798.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.46	3.02	15.97	4.83	8.59	3.45	1.99	7.6	3.93	7.53	9.04	4.7
Merged-chr19-18620244-1	chr19	18620144	18620344	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11569.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.46	5.28	2.85	0.4	6.55	9.09	9.97	2.27	7.87	13.05	9.04	0.94
Merged-chr19-37174896-1	chr19	37174796	37174996	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	1053.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	10.5	6.29	11.98	15.28	5.73	7.53	12.95	7.32	12.98	10.04	12.06	4.7
Merged-chr3-116651182-1	chr3	116651082	116651282	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	11495.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	5.25	5.03	6.85	8.04	13.09	20.38	7.97	4.57	6.88	7.03	7.03	2.51
Merged-chr3-37654187-3	chr3	37654103	37654303	+	849.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14256.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	11.71	20.37	21.11	18.1	15.96	13.8	7.97	14.58	14.16	12.55	10.55	7.83
Merged-chr17-15938170-3	chr17	15938058	15938258	+	849.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-111572.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	1.62	2.01	8.56	12.07	21.68	7.53	11.63	17.64	18.49	14.56	19.09	31.95
Merged-chr11-120343923-4	chr11	120343924	120344124	+	849.908325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3389.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	7.67	9.31	13.12	8.04	8.18	12.23	2.66	3.81	11.21	6.03	6.53	6.89
Merged-chr5-143043495-3	chr5	143043387	143043587	+	849.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	69533.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	12.52	10.82	6.85	7.24	8.18	22.26	7.64	10.37	15.14	14.06	16.08	7.21
Merged-chr8-107455398-3	chr8	107455316	107455516	+	849.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025830, intron 2 of 23)	intron (NM_025830, intron 2 of 23)	19018.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	9.29	10.06	9.13	19.31	6.55	11.92	9.3	8.47	17.7	18.08	16.08	11.28
Merged-chr8-72297136-3	chr8	72297033	72297233	+	849.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-21929.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.06	1.76	18.25	11.66	6.14	10.98	10.63	25.04	10.62	11.05	25.12	14.1
Merged-chr5-36705963-2	chr5	36705848	36706048	+	849.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9927.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.06	5.03	2.85	6.44	11.86	10.35	1.99	9.9	12.19	3.51	8.04	6.27
Merged-chr7-122298770-3	chr7	122298682	122298882	+	849.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	MIRb|SINE|MIR	9657.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	14.13	6.04	16.54	16.49	23.32	4.7	6.98	17.24	10.82	9.04	15.07	12.84
Merged-chr7-83857341-3	chr7	83857243	83857443	+	849.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26998.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	15.34	13.83	20.54	8.45	18.41	16.93	12.29	25.23	12.0	10.04	13.57	7.21
Merged-chr3-54806569-1	chr3	54806469	54806669	+	849.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133231, intron 1 of 2)	intron (NM_133231, intron 1 of 2)	1222.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	9.29	6.04	3.42	4.02	11.86	10.66	15.28	13.65	18.29	7.03	8.04	6.27
Merged-chr5-34233940-3	chr5	34233836	34234036	+	849.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 4 of 12)	intron (NM_001015039, intron 4 of 12)	-46226.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	15.75	11.32	6.28	3.22	9.41	15.68	5.98	8.69	12.0	11.05	12.56	2.51
Merged-chr10-52309364-3	chr10	52309264	52309464	+	849.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025705, intron 6 of 10)	intron (NM_025705, intron 6 of 10)	72760.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	11.71	11.82	9.13	21.32	30.27	19.44	36.87	45.31	11.01	9.54	18.59	14.72
Merged-chr5-14049254-1	chr5	14049154	14049354	+	849.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011348, intron 1 of 16)	L3|LINE|CR1	23978.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	2.02	4.28	3.42	2.01	12.68	10.66	5.65	7.51	2.16	1.51	2.01	0.63
Merged-chr6-113749255-2	chr6	113749135	113749335	+	849.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8554.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	4.85	4.53	10.27	3.22	10.23	5.02	3.32	10.29	7.08	4.52	13.57	10.02
Merged-chr2-140783568-1	chr2	140783468	140783668	+	849.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-112092.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.85	2.52	9.13	4.02	6.95	8.78	10.3	12.79	2.95	0.5	3.52	4.07
Merged-chrX-7801542-3	chrX	7801448	7801648	+	849.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290455, exon 11 of 26)	exon (NM_001290455, exon 11 of 26)	-5553.0	NR_035430	100316807.0		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA	14.13	11.32	3.42	10.86	9.0	10.03	2.33	16.51	11.8	15.06	16.08	14.41
Merged-chr2-90538746-3	chr2	90538639	90538839	+	849.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	41908.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	15.75	19.37	15.97	15.69	16.36	27.59	15.61	16.77	10.42	9.04	5.02	4.39
Merged-chr2-170351753-3	chr2	170351639	170351839	+	849.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029815, intron 11 of 12)	intron (NM_029815, intron 11 of 12)	-4622.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	16.56	16.1	15.4	6.84	5.73	17.25	6.98	6.79	15.14	13.05	7.03	3.76
Merged-chr11-50154393-3	chr11	50154283	50154483	+	849.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029745, intron 10 of 20)	L1MB3|LINE|L1	-20468.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	14.13	14.59	5.7	18.9	24.14	30.42	21.26	33.2	6.69	11.55	7.54	4.07
Merged-chr2-35623213-2	chr2	35623123	35623323	+	849.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	1242.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	10.5	9.06	18.83	10.46	12.27	13.48	5.65	11.89	8.26	4.52	6.03	3.76
Merged-chr8-43351143-2	chr8	43351036	43351236	+	849.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44127.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.0	1.01	0.0	0.8	9.0	5.02	4.65	17.47	13.96	8.03	13.57	11.28
Merged-chr17-46302097-2	chr17	46301991	46302191	+	849.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286013, intron 5 of 5)	intron (NM_001286013, intron 5 of 5)	4163.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	7.67	2.77	10.84	4.02	9.82	9.72	9.63	4.74	7.28	8.03	18.09	12.84
Merged-chr12-81591624-3	chr12	81591511	81591711	+	849.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347384, intron 1 of 7)	intron (NM_001347384, intron 1 of 7)	3397.0	NM_001347385	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	9.69	8.05	23.39	15.28	6.55	31.67	13.95	16.4	23.01	18.58	12.06	9.71
Merged-chr7-25785004-3	chr7	25784928	25785128	+	849.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	3705.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	10.9	4.78	10.84	9.25	13.09	7.53	6.64	11.19	13.57	14.06	18.59	5.33
Merged-chr1-190910057-3	chr1	190909950	190910150	+	849.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	1720.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	9.69	3.27	10.84	14.48	11.05	17.87	9.3	9.03	8.46	5.02	6.53	13.47
Merged-chrX-134583109-3	chrX	134583001	134583201	+	849.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013482)	promoter-TSS (NM_013482)	39.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.46	11.07	10.84	12.47	15.96	7.84	20.59	16.74	7.08	9.04	11.05	10.96
Merged-chr6-127338593-3	chr6	127338499	127338699	+	849.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30632.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	10.5	10.06	17.11	14.48	7.77	4.39	3.32	11.64	15.74	4.52	13.06	3.76
Merged-chr3-37361203-2	chr3	37361099	37361299	+	849.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12546.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	4.04	4.02	13.69	2.41	12.27	6.27	10.3	14.5	12.39	14.56	15.58	7.52
Merged-chr7-118518852-3	chr7	118518738	118518938	+	849.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	14518.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	19.38	18.86	16.54	6.44	16.36	17.56	8.3	17.5	15.93	13.05	23.11	6.58
Merged-chr12-4038901-2	chr12	4038826	4039026	+	849.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082483)	promoter-TSS (NM_001082483)	-11.0	NM_001082483	668212.0	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	9.69	6.04	3.99	7.24	5.73	9.72	7.97	10.63	14.75	7.03	15.07	9.4
Merged-chr4-6376116-2	chr4	6376010	6376210	+	849.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	10430.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.63	2.26	3.99	8.45	6.55	8.47	10.3	23.72	9.64	10.04	14.57	10.65
Merged-chr17-43060909-2	chr17	43060809	43061009	+	849.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44354.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	10.5	8.05	34.23	21.32	19.64	12.86	21.92	34.71	6.69	1.51	3.52	2.19
Merged-chr4-95307312-3	chr4	95307226	95307426	+	849.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	11.31	5.53	14.26	20.11	20.86	9.41	18.27	26.92	29.9	10.54	42.21	16.92
Merged-chr15-79516430-3	chr15	79516381	79516581	+	849.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134090)	promoter-TSS (NM_134090)	73.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	16.96	14.34	9.7	11.66	13.09	17.25	10.63	9.73	11.21	9.54	6.03	7.21
Merged-chr11-117848626-3	chr11	117848532	117848732	+	849.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-605.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	9.69	8.55	5.7	3.62	11.86	6.9	7.97	7.15	16.13	10.04	7.03	10.65
Merged-chr1-74398284-3	chr1	74398170	74398370	+	849.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153088)	TTS (NM_153088)	3960.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	12.92	9.56	2.28	10.05	4.91	11.92	10.96	8.1	14.55	13.56	9.04	11.59
Merged-chr5-45492407-3	chr5	45492324	45492524	+	849.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-950.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	10.09	14.84	16.54	14.88	9.0	8.47	12.62	35.55	16.33	10.04	30.65	15.35
Merged-chr4-119883037-3	chr4	119882922	119883122	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	68344.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	5.25	6.54	13.69	13.67	18.41	4.7	13.62	14.27	8.85	3.01	9.04	5.95
Merged-chr17-84180959-1	chr17	84180859	84181059	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6988.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.06	12.07	5.7	4.83	9.82	5.64	1.0	1.68	5.51	7.03	8.54	4.07
Merged-chr13-104286025-3	chr13	104285925	104286125	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1810.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	23.82	23.39	13.12	9.65	13.5	12.54	6.31	10.77	32.06	15.57	14.07	14.1
Merged-chr18-60812190-1	chr18	60812090	60812290	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_039567)	TTS (NR_039567)	114.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	9.29	21.63	13.69	2.41	1.64	10.66	0.66	0.59	16.52	14.56	3.01	4.39
Merged-chr14-74976503-1	chr14	74976403	74976603	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	1417.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.4	5.03	5.7	8.04	4.91	7.84	5.98	7.96	6.69	1.51	3.01	3.13
Merged-chr17-26501011-2	chr17	26500946	26501146	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	7426.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	13.33	14.84	6.28	1.21	23.32	14.42	1.99	4.82	6.69	11.05	6.53	4.7
Merged-chr9-69667445-2	chr9	69667331	69667531	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93509.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	5.25	4.02	3.99	5.23	21.68	15.37	20.26	26.16	3.54	12.05	17.08	13.16
Merged-chr3-9783326-1	chr3	9783226	9783426	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	50353.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.42	2.77	0.57	7.64	7.77	3.76	6.98	6.7	1.97	2.51	2.51	2.19
Merged-chr2-32846445-3	chr2	32846315	32846515	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	CpG	817.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	10.09	9.56	3.99	7.24	4.5	10.66	11.96	12.79	12.59	8.03	20.6	10.02
Merged-chr13-36695980-2	chr13	36695871	36696071	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38506.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.02	6.54	2.28	8.04	1.23	2.2	3.65	7.54	28.91	18.58	24.12	21.3
Merged-chr14-93654953-2	chr14	93654854	93655054	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	235715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	10.9	5.28	4.56	13.27	18.0	15.37	9.63	25.18	4.52	4.02	5.53	1.57
Merged-chr14-22739781-1	chr14	22739681	22739881	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-196983.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.42	2.26	2.28	2.41	12.27	7.21	10.3	14.66	3.93	0.0	2.51	4.7
Merged-chr11-100527351-1	chr11	100527251	100527451	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134037, intron 1 of 27)	CpG	649.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	12.92	7.8	2.28	7.24	7.77	17.25	6.64	7.99	9.05	6.53	10.05	4.7
Merged-chr7-81074856-3	chr7	81074747	81074947	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17247.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	7.67	6.29	19.4	19.31	4.91	8.47	13.62	10.88	6.1	10.04	11.56	10.02
Merged-chr3-59185806-3	chr3	59185687	59185887	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	9317.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	6.86	15.09	14.26	12.07	9.41	16.62	8.64	7.29	12.98	13.05	21.61	6.58
Merged-chr9-72965520-3	chr9	72965429	72965629	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163725, intron 4 of 6)	B1F|SINE|Alu	6744.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	9.69	9.81	18.83	10.05	9.82	14.74	7.31	12.67	22.62	7.03	9.55	10.02
Merged-chr15-4016455-3	chr15	4016370	4016570	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045740)	TTS (NR_045740)	-9958.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	11.71	11.82	14.83	11.66	13.91	6.27	8.64	23.3	14.16	15.06	15.58	14.41
Merged-chr9-57589939-3	chr9	57589844	57590044	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027895, intron 1 of 15)	intron (NM_027895, intron 1 of 15)	492.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	11.71	3.52	9.7	7.64	7.77	12.86	12.29	7.04	11.8	8.54	9.04	8.77
Merged-chr6-15764322-3	chr6	15764237	15764437	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	43676.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	8.88	7.55	8.56	9.65	5.32	10.66	8.64	11.38	20.65	9.54	17.59	9.71
Merged-chr6-125342361-2	chr6	125342247	125342447	+	849.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 7 of 11)	L1M4|LINE|L1	-7376.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.42	2.01	6.85	6.44	2.86	5.64	4.98	6.98	13.18	20.08	20.1	15.04
Merged-chr7-126707876-2	chr7	126707790	126707990	+	849.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3074.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.65	4.53	3.99	4.02	11.45	9.72	2.99	12.11	12.0	12.55	8.54	12.84
Merged-chr8-33928452-2	chr8	33928363	33928563	+	849.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	1400.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	6.46	5.79	2.28	2.01	8.59	11.6	3.99	11.75	16.72	17.07	14.57	15.35
Merged-chr2-169703088-2	chr2	169703040	169703240	+	849.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	B1F|SINE|Alu	69494.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	5.65	4.78	4.56	6.44	5.73	4.7	7.64	6.7	7.67	15.06	15.58	15.04
Merged-chr10-13016766-3	chr10	13016647	13016847	+	849.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8297.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	12.52	7.8	5.13	13.67	17.59	15.37	6.31	19.51	14.36	10.54	10.55	12.84
Merged-chr13-102846671-3	chr13	102846566	102846766	+	849.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	86411.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	6.06	10.06	3.99	8.85	16.77	11.6	26.24	29.41	25.18	23.6	23.62	13.16
Merged-chr5-140608177-4	chr5	140608121	140608321	+	849.3875119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	880.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	9.29	9.56	7.99	8.04	8.18	12.54	15.28	18.76	19.67	11.05	15.07	7.52
Merged-chr17-8164936-3	chr17	8164848	8165048	+	849.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-570.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	13.33	24.65	10.27	7.24	11.86	46.1	14.28	7.15	15.34	19.58	16.08	6.27
Merged-chr3-54248494-3	chr3	54248387	54248587	+	849.349182	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	92430.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	1.21	3.02	0.0	2.41	9.82	8.47	11.96	7.29	5.9	4.52	9.55	2.82
Merged-chr5-64204207-3	chr5	64204153	64204353	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-26104.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	28.27	11.32	33.09	29.76	7.77	4.39	19.27	18.67	12.0	9.54	11.56	6.89
Merged-chr17-25064391-1	chr17	25064291	25064491	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001183, intron 2 of 2)	intron (NM_001001183, intron 2 of 2)	16723.0	NM_001001183	407831.0	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	9.29	10.06	15.97	5.63	1.23	2.51	0.33	2.1	2.36	2.01	2.51	0.94
Merged-chr11-96935235-3	chr11	96935150	96935350	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146026, exon 3 of 3)	3' UTR (NM_146026, exon 3 of 3)	5926.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	12.11	6.79	4.56	8.85	31.5	23.2	18.93	25.07	45.24	30.63	40.7	24.43
Merged-chr1-144309476-1	chr1	144309376	144309576	+	849.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-60372.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.25	4.28	3.42	7.24	9.41	9.09	1.99	6.7	10.62	14.06	8.54	4.7
Merged-chr12-105733544-3	chr12	105733447	105733647	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030187, intron 6 of 17)	intron (NM_030187, intron 6 of 17)	27565.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	7.27	9.81	22.25	9.25	19.64	14.42	8.97	14.94	19.67	15.06	24.12	17.23
Merged-chr7-97400135-3	chr7	97400134	97400334	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024220, exon 1 of 3)	exon (NM_024220, exon 1 of 3)	231.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	3.63	4.53	8.56	8.04	3.27	7.84	7.31	6.11	2.36	8.54	10.05	5.95
Merged-chr18-42762001-1	chr18	42761901	42762101	+	849.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	137505.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.81	1.51	0.0	1.61	4.91	5.02	5.31	2.05	4.13	1.51	3.52	1.25
Merged-chr2-168229863-3	chr2	168229789	168229989	+	849.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160330)	promoter-TSS (NM_001160330)	490.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	10.5	12.58	16.54	11.26	11.86	17.56	14.28	18.22	19.47	26.61	13.06	19.11
Merged-chr2-45114776-3	chr2	45114668	45114868	+	849.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110572)	TTS (NR_110572)	-1489.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	11.71	10.56	10.27	1.21	11.05	27.59	14.28	8.66	10.82	13.56	14.07	4.7
Merged-chr2-122409170-3	chr2	122409064	122409264	+	849.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31656.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	8.08	7.29	12.55	18.5	6.95	13.48	7.97	19.93	16.33	24.6	17.08	11.28
Merged-chr1-84838676-4	chr1	84838519	84838719	+	849.275024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133975, intron 1 of 40)	CpG	685.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	8.08	8.3	9.13	9.65	6.95	7.53	10.96	8.83	11.6	12.05	13.57	14.41
Merged-chr2-181220077-2	chr2	181219944	181220144	+	849.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199312)	promoter-TSS (NM_199312)	28.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	2.42	3.77	2.28	2.41	11.45	7.21	11.96	6.76	12.19	8.03	6.03	8.46
Merged-chr9-52172516-2	chr9	52172430	52172630	+	849.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4419.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	5.25	5.79	6.85	4.42	8.59	9.72	3.99	6.17	2.75	4.02	5.02	3.13
Merged-chr11-115676919-3	chr11	115676824	115677024	+	849.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	22610.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	8.88	17.1	9.7	15.28	19.64	12.54	5.65	15.28	21.64	19.08	14.57	10.96
Merged-chr18-53921647-3	chr18	53921615	53921815	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59602.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.63	4.02	7.42	10.46	5.73	9.72	6.98	13.35	15.54	11.05	27.13	12.53
Merged-chr1-34855857-3	chr1	34855745	34855945	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	5856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	10.5	8.55	11.98	4.02	7.36	3.76	3.65	8.78	22.03	10.54	16.58	7.21
Merged-chr1-72282793-3	chr1	72282682	72282882	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356516, intron 1 of 6)	intron (NM_001356516, intron 1 of 6)	1539.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	11.31	10.56	18.83	10.86	15.14	3.45	10.63	15.67	8.65	10.54	14.07	10.02
Merged-chr5-122698838-3	chr5	122698755	122698955	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8689.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	12.92	9.81	16.54	22.12	17.59	22.58	16.94	28.6	11.41	9.04	6.03	10.65
Merged-chr10-119040429-3	chr10	119040337	119040537	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10062.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.25	6.29	9.13	7.24	15.55	13.48	13.95	12.56	20.46	14.06	36.18	10.65
Merged-chr19-32494820-3	chr19	32494722	32494922	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9053.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	16.56	15.09	6.85	8.04	10.64	6.27	6.31	10.23	31.67	23.6	28.14	20.05
Merged-chr9-90109551-3	chr9	90109453	90109653	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	5267.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.25	8.05	12.55	6.44	11.05	13.8	7.31	17.97	19.08	11.05	25.12	12.53
Merged-chr9-65533586-3	chr9	65533477	65533677	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	46510.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	9.29	10.06	9.13	4.02	23.32	16.62	7.97	9.73	15.74	14.06	13.06	10.34
Merged-chr3-30904812-3	chr3	30904704	30904904	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001165955, exon 14 of 14)	3' UTR (NM_001165955, exon 14 of 14)	48854.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	12.92	7.29	10.27	12.07	4.5	7.84	12.62	15.25	12.98	6.03	9.55	8.77
Merged-chr9-22530911-2	chr9	22530821	22531021	+	849.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360259, intron 5 of 22)	PB1D10|SINE|Alu	55206.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.42	3.27	8.56	8.04	2.45	14.42	12.29	18.84	8.26	5.52	13.57	9.08
Merged-chr10-19850877-2	chr10	19850771	19850971	+	849.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029529, exon 1 of 2)	exon (NM_029529, exon 1 of 2)	588.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	10.9	11.57	10.27	11.66	12.27	10.03	7.31	5.8	3.54	9.54	7.03	3.45
Merged-chr4-140679891-3	chr4	140679794	140679994	+	849.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13989.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	20.59	10.06	11.41	12.87	11.86	12.54	3.99	12.36	25.96	20.59	17.08	15.04
Merged-chr10-127526873-3	chr10	127526779	127526979	+	849.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183297, exon 2 of 2)	exon (NM_183297, exon 2 of 2)	-4435.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	19.38	14.09	10.27	4.42	12.68	27.59	13.29	15.2	17.51	10.54	27.13	8.77
Merged-chr2-29620105-3	chr2	29620018	29620218	+	849.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	CpG	398.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	12.92	11.57	3.42	20.51	6.95	12.86	10.3	6.45	12.0	20.59	12.56	9.08
Merged-chr7-44837161-3	chr7	44837058	44837258	+	849.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171024, intron 4 of 8)	intron (NM_001171024, intron 4 of 8)	870.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	10.09	16.1	9.7	1.61	11.05	22.58	5.31	3.25	23.6	13.05	9.04	3.76
Merged-chr17-86293532-3	chr17	86293396	86293596	+	849.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-6318.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	12.52	8.55	15.97	8.85	8.59	12.54	21.26	13.85	16.33	12.05	17.08	7.83
Merged-chr6-8345639-2	chr6	8345526	8345726	+	849.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	86338.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	4.85	6.79	4.56	4.02	5.73	5.33	14.95	19.15	27.93	6.03	22.61	9.08
Merged-chr11-119378750-2	chr11	119378629	119378829	+	849.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 15 of 16)	intron (NM_178743, intron 15 of 16)	-11743.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	7.67	6.54	5.7	4.83	9.41	17.56	1.0	7.88	14.55	6.53	10.05	11.9
Merged-chr5-64381780-3	chr5	64381665	64381865	+	849.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86177.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	8.88	11.32	6.28	4.83	15.14	7.53	6.31	9.0	14.16	14.06	9.04	11.28
Merged-chr10-118050479-3	chr10	118050380	118050580	+	849.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91307.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.62	3.27	10.84	10.46	14.32	10.03	21.59	15.7	17.11	15.06	30.65	23.18
Merged-chr6-85369624-3	chr6	85369519	85369719	+	849.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	5015.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	9.29	10.31	15.4	8.04	24.55	16.62	19.93	21.03	11.41	14.06	18.59	17.86
Merged-chr6-122599365-4	chr6	122599233	122599433	+	849.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	3111.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	12.52	10.56	14.83	10.05	14.32	17.56	4.98	12.84	21.44	21.59	14.07	18.8
Merged-chr9-110692660-2	chr9	110692551	110692751	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028312, intron 2 of 6)	URR1B|DNA|hAT-Charlie	36148.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	6.46	4.53	13.69	12.07	15.14	12.54	23.92	9.79	6.49	4.52	6.53	3.45
Merged-chr6-112739825-2	chr6	112739730	112739930	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080448, intron 15 of 21)	intron (NM_080448, intron 15 of 21)	-43160.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	14.13	5.79	27.38	17.7	5.73	11.92	4.65	12.79	5.7	4.52	8.04	9.4
Merged-chr15-81178053-1	chr15	81177953	81178153	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	12704.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	2.42	2.01	2.28	2.41	4.5	8.78	3.65	8.5	5.51	5.02	6.03	0.63
Merged-chr3-15126382-1	chr3	15126282	15126482	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	155181.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	1.21	0.5	5.7	4.02	5.73	3.76	1.66	6.14	0.98	1.0	1.51	0.0
Merged-chr14-64368427-1	chr14	64368327	64368527	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	48529.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	3.63	2.01	0.57	5.63	5.32	7.53	4.65	13.85	4.72	8.03	4.52	1.57
Merged-chr7-81842048-1	chr7	81841948	81842148	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12617.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	2.83	2.52	0.0	5.23	14.73	3.45	5.31	8.3	0.79	3.01	2.51	2.19
Merged-chr7-79732895-1	chr7	79732795	79732995	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113471)	promoter-TSS (NM_001113471)	-119.0	NM_001113471	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	9.29	2.01	9.13	3.22	5.32	9.09	9.3	8.24	5.31	2.51	5.53	4.7
Merged-chr18-13027426-1	chr18	13027326	13027526	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20436.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	1.62	1.01	0.0	7.64	3.27	2.51	1.33	5.36	3.34	3.01	5.02	5.01
Merged-chr1-106214309-1	chr1	106214209	106214409	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	42440.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.23	2.52	1.71	9.25	4.91	5.33	8.64	8.5	4.33	2.01	4.52	4.07
Merged-chr12-102246471-1	chr12	102246371	102246571	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-36603.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.42	6.04	4.56	4.02	2.45	2.2	5.31	6.67	1.97	4.02	3.52	3.13
Merged-chr19-27411329-1	chr19	27411229	27411429	+	849.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177474, intron 13 of 17)	intron (NM_177474, intron 13 of 17)	18579.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0.4	2.52	3.42	1.21	0.82	0.31	0.0	0.03	6.29	1.51	6.03	2.51
Merged-chr17-80445948-3	chr17	80445785	80445985	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009231, intron 6 of 21)	intron (NM_009231, intron 6 of 21)	34568.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	5.65	4.28	1.14	5.23	6.55	6.9	5.98	13.01	18.49	17.07	22.61	9.08
Merged-chr6-96105754-1	chr6	96105654	96105854	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-7400.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	1.62	1.01	1.14	0.0	21.68	12.23	17.61	17.33	6.69	5.02	8.54	0.63
Merged-chr17-34280814-1	chr17	34280714	34280914	+	849.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6957.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.0	0.0	0.0	0.4	0.0	0.0	0.0	0.45	11.41	6.53	6.53	12.22
Merged-chr9-3015717-1	chr9	3015617	3015817	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	23026.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	5.25	7.04	5.7	2.01	11.05	4.39	7.97	40.35	4.52	16.07	8.04	3.45
Merged-chr16-29839264-1	chr16	29839164	29839364	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139860.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	2.83	2.77	11.41	1.61	3.68	10.03	2.99	6.08	6.1	3.01	9.04	3.13
Merged-chr14-118507908-1	chr14	118507808	118508008	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 25 of 29)	intron (NM_001163676, intron 25 of 29)	84564.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	2.42	2.01	0.0	5.63	10.23	3.14	4.98	11.1	1.97	2.51	1.0	2.51
Merged-chr13-102860336-1	chr13	102860236	102860436	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	100081.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	8.48	0.75	10.84	8.04	3.27	8.78	6.31	12.76	3.74	7.03	9.55	3.45
Merged-chr13-110561258-3	chr13	110561153	110561353	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166209.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.06	9.06	5.7	11.26	6.14	9.09	7.31	15.31	10.82	11.05	16.08	11.9
Merged-chr13-96011330-2	chr13	96011231	96011431	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 4 of 12)	intron (NM_029210, intron 4 of 12)	-119409.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	9.29	4.02	7.99	5.63	4.91	15.05	14.62	18.36	10.03	7.53	20.6	8.46
Merged-chr2-163754469-1	chr2	163754369	163754569	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4230.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	10.09	3.52	5.7	5.63	7.36	6.27	8.97	10.01	5.7	2.01	5.53	5.01
Merged-chr3-22021693-2	chr3	22021586	22021786	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54966.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	12.52	9.06	1.14	6.44	11.05	5.33	3.65	11.52	11.21	9.04	11.05	2.19
Merged-chr2-34577676-1	chr2	34577576	34577776	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	170825.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.0	2.01	0.0	0.0	7.77	7.53	9.63	5.5	1.18	2.01	6.03	8.77
Merged-chr9-21446437-2	chr9	21446326	21446526	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	21518.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.04	2.01	10.84	6.03	8.18	7.53	4.98	8.83	7.67	5.02	17.59	13.16
Merged-chr8-80263099-3	chr8	80263013	80263213	+	848.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205105.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	12.92	7.55	14.26	26.95	13.5	16.62	8.3	19.82	6.29	14.56	26.13	6.58
Merged-chr3-139021933-3	chr3	139021847	139022047	+	848.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	53254.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	26.25	11.07	14.83	18.9	22.09	14.11	20.26	13.18	12.39	25.61	10.05	6.58
Merged-chr8-120711388-3	chr8	120711303	120711503	+	848.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-24955.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.27	6.04	43.35	26.95	12.68	5.64	8.64	20.55	10.62	8.03	18.59	8.14
Merged-chr4-126051821-3	chr4	126051726	126051926	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025544, intron 5 of 7)	intron (NM_025544, intron 5 of 7)	4898.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	5.65	18.11	19.4	11.26	9.0	10.98	6.64	12.56	10.62	9.04	12.06	14.1
Merged-chr9-70842912-3	chr9	70842804	70843004	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	91904.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	14.13	9.31	6.85	12.87	17.59	11.6	7.64	17.33	12.0	20.59	10.55	7.52
Merged-chr15-7863745-3	chr15	7863638	7863838	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48188.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	9.69	10.31	8.56	8.04	19.23	21.64	13.95	16.91	9.44	20.08	18.59	2.82
Merged-chr1-16505113-3	chr1	16504993	16505193	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347044, intron 4 of 13)	RMER1C|Other|Other	14022.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	8.88	3.27	15.97	20.11	9.0	10.66	10.63	26.47	5.7	7.53	16.08	9.71
Merged-chr13-29983754-3	chr13	29983673	29983873	+	848.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	618.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	11.31	10.56	5.7	11.26	6.55	6.9	11.63	5.52	18.88	20.59	15.07	12.53
Merged-chr18-23812323-3	chr18	23812097	23812297	+	848.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	8227.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.44	3.77	5.7	4.42	2.45	5.96	5.31	3.48	5.51	2.01	5.02	2.82
Merged-chr1-128632797-3	chr1	128632745	128632945	+	848.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40546.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.67	8.8	13.69	21.32	18.0	4.39	24.58	12.14	12.39	15.06	9.55	9.4
Merged-chr13-65097253-3	chr13	65097159	65097359	+	848.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083901, intron 2 of 12)	ORR1D2-int|LTR|ERVL-MaLR	15723.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	12.52	13.33	7.99	2.41	8.59	19.76	8.64	4.68	14.75	18.08	17.08	6.89
Merged-chr19-3980548-3	chr19	3980457	3980657	+	848.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177438, intron 8 of 9)	intron (NM_001177438, intron 8 of 9)	-6013.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	16.96	11.82	3.99	9.65	15.55	13.17	6.31	10.21	13.57	17.07	20.6	9.71
Merged-chr10-128097897-3	chr10	128097763	128097963	+	848.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 2 of 29)	intron (NM_054078, intron 2 of 29)	5080.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	10.09	12.07	9.13	14.48	14.73	5.33	7.31	11.72	22.23	8.03	11.05	12.22
Merged-chr17-27028114-2	chr17	27028030	27028230	+	848.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	497.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	4.04	10.56	2.85	4.02	10.64	10.03	8.64	7.37	13.57	12.05	5.53	10.02
Merged-chr12-86825058-2	chr12	86824961	86825161	+	848.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59753.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.27	2.01	10.27	6.44	12.68	7.21	4.32	11.83	11.6	9.04	14.57	3.13
Merged-chr15-90623691-3	chr15	90623604	90623804	+	848.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	55684.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.85	11.07	6.85	10.46	37.64	32.93	22.59	36.25	9.05	18.58	17.59	10.34
Merged-chr6-88831676-3	chr6	88831599	88831799	+	848.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10236.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	14.13	15.09	2.85	7.24	6.55	8.78	7.97	7.96	7.87	20.59	14.57	10.02
Merged-chr2-11299514-3	chr2	11299394	11299594	+	848.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 17 of 17)	intron (NM_008859, intron 17 of 17)	-39995.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	8.08	9.06	7.99	10.86	14.32	11.29	8.97	12.31	11.01	10.04	25.63	9.08
Merged-chr4-120087921-1	chr4	120087821	120088021	+	848.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 3 of 8)	L1M4|LINE|L1	-73285.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	2.42	1.76	7.42	14.48	3.27	8.78	15.28	18.67	4.52	5.02	15.07	2.19
Merged-chrUn_JH584304-103885-1	chrUn_JH584304	103785	103985	+	848.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-44196.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	20.65	22.59	17.59	25.69
Merged-chr5-34285505-1	chr5	34285405	34285605	+	848.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	2819.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	5.25	11.82	2.85	0.8	2.45	8.47	8.64	9.64	12.59	4.52	8.54	5.64
Merged-chr11-104361927-2	chr11	104361821	104362021	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359634, intron 5 of 14)	RLTR19|LTR|ERVK	80370.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	10.09	4.02	14.83	14.48	33.96	22.58	21.26	20.13	6.1	5.02	8.54	12.53
Merged-chr16-5445968-2	chr16	5445863	5446063	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-190007.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.04	5.79	21.68	11.26	15.14	9.72	2.33	7.51	6.29	0.5	3.52	5.01
Merged-chr7-35106801-2	chr7	35106701	35106901	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEb|LINE|L1	-12492.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	11.31	2.26	19.97	12.87	17.59	15.68	10.63	25.01	6.49	15.06	8.04	5.01
Merged-chr5-5359477-2	chr5	5359353	5359553	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20798.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	14.13	7.8	7.42	8.45	12.68	14.42	12.62	15.08	3.93	12.05	8.04	1.25
Merged-chr7-89178163-2	chr7	89178061	89178261	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	160626.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	9.69	3.02	15.97	17.7	7.77	9.09	3.99	16.29	6.88	14.06	11.05	4.07
Merged-chrX-73911242-3	chrX	73911160	73911360	+	848.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162423)	promoter-TSS (NM_001162423)	38.0	NM_138630	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	13.33	8.3	17.68	16.89	14.32	14.74	6.98	12.5	11.6	21.59	20.6	16.29
Merged-chr1-120467507-2	chr1	120467402	120467602	+	848.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37522.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	8.48	8.05	23.96	9.65	0.82	0.0	2.33	0.98	16.33	11.05	30.65	13.78
Merged-chr9-58269080-2	chr9	58268972	58269172	+	848.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15908.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	5.25	4.78	4.56	9.65	15.14	9.09	3.32	5.66	12.78	12.55	4.02	4.07
Merged-chr10-8792550-3	chr10	8792466	8792666	+	848.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	93504.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	10.5	15.85	7.99	10.86	25.36	21.64	10.63	23.24	22.82	18.58	29.65	11.59
Merged-chr2-91183336-3	chr2	91183229	91183429	+	848.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-282.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	14.13	13.08	10.27	7.24	15.55	17.25	9.97	12.9	12.98	11.05	25.12	13.47
Merged-chr6-72377143-1	chr6	72377043	72377243	+	848.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	3325.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	18.57	4.02	8.56	6.44	15.96	12.23	5.98	22.12	6.29	5.02	7.03	12.53
Merged-chr2-29466603-2	chr2	29466496	29466696	+	848.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290489, intron 2 of 6)	L1MA8|LINE|L1	8698.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	5.25	5.53	9.13	10.05	14.73	13.8	9.63	14.13	11.01	13.56	9.04	7.52
Merged-chr13-97573259-3	chr13	97573148	97573348	+	848.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	13248.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	8.48	13.58	9.7	9.65	19.64	12.54	13.29	10.79	18.69	16.07	6.53	11.9
Merged-chr10-60933641-2	chr10	60933557	60933757	+	848.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4475.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	1.21	1.51	2.28	1.21	9.82	6.59	8.3	12.42	12.78	13.05	17.59	15.04
Merged-chr3-31328011-2	chr3	31327913	31328113	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17694.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.02	0.5	0.0	2.41	19.64	15.68	18.27	16.96	15.14	19.58	9.04	8.14
Merged-chr7-83571297-2	chr7	83571198	83571398	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13633.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.02	4.78	6.28	15.28	1.64	6.27	8.3	7.07	13.37	3.01	22.11	11.59
Merged-chr14-122010519-1	chr14	122010419	122010619	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-24155.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	6.46	1.51	7.42	4.42	13.09	6.9	7.97	9.95	2.16	6.03	2.01	0.31
Merged-chrX-13469362-3	chrX	13469259	13469459	+	848.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	intron (NM_173415, intron 2 of 2)	1687.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	22.61	7.55	9.7	8.04	17.18	15.37	11.29	20.24	19.28	18.08	17.08	10.34
Merged-chr10-41893894-1	chr10	41893794	41893994	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	6455.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.65	2.52	19.97	5.63	10.23	3.76	5.65	13.91	5.7	4.52	8.54	2.51
Merged-chr10-71261817-1	chr10	71261717	71261917	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145420, intron 3 of 6)	intron (NM_145420, intron 3 of 6)	23445.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	3.23	2.01	2.28	8.85	3.68	10.03	10.63	13.68	7.67	8.54	4.02	7.83
Merged-chr16-44762071-3	chr16	44761942	44762142	+	848.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3694.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.86	17.61	13.69	14.88	11.05	9.09	10.63	9.08	13.96	8.03	19.09	6.58
Merged-chr9-42945403-3	chr9	42945350	42945550	+	848.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1079.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	5.65	3.77	6.28	13.27	5.73	5.96	5.98	5.13	8.65	10.04	6.53	12.22
Merged-chr10-88720040-3	chr10	88719953	88720153	+	848.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11048.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	10.9	9.06	14.83	6.44	26.18	15.05	9.3	15.14	30.49	22.09	19.6	9.4
Merged-chr15-35799619-2	chr15	35799514	35799714	+	848.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 39 of 61)	MTB|LTR|ERVL-MaLR	-138567.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	5.25	2.01	8.56	10.05	6.95	16.93	7.31	16.07	10.23	16.57	13.57	5.33
Merged-chr10-117677196-2	chr10	117677108	117677308	+	848.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027468, intron 7 of 8)	intron (NM_027468, intron 7 of 8)	33550.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.46	5.53	18.25	2.82	18.82	10.03	8.3	20.1	23.41	13.56	24.12	16.92
Merged-chr10-53877482-1	chr10	53877382	53877582	+	848.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126573.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	3.23	5.53	4.56	3.22	13.91	10.98	7.31	7.79	6.69	2.51	10.55	2.19
Merged-chr7-127165804-3	chr7	127165707	127165907	+	848.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27984.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	18.57	11.82	11.98	12.07	9.41	11.92	7.31	9.48	20.46	19.58	20.6	19.42
Merged-chr2-126682443-3	chr2	126682334	126682534	+	848.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6097.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	11.71	8.8	3.42	16.89	6.55	10.98	11.29	11.44	11.01	9.04	22.61	13.47
Merged-chr17-33979629-2	chr17	33979525	33979725	+	848.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-834.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	1.62	2.52	2.28	3.22	10.23	10.35	5.98	6.7	14.75	7.03	14.07	4.39
Merged-chrX-85874439-4	chrX	85874318	85874518	+	848.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	L1_Rod|LINE|L1	4145.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	6.46	5.53	5.7	6.44	19.23	10.66	3.99	11.33	9.05	17.57	7.54	12.22
Merged-chr10-88330948-2	chr10	88330831	88331031	+	848.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	26144.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.65	11.57	3.42	8.45	5.32	6.59	1.66	9.9	9.83	4.52	16.58	8.46
Merged-chr7-141165043-3	chr7	141164927	141165127	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172100, intron 2 of 9)	intron (NM_001172100, intron 2 of 9)	3659.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	10.09	5.79	5.7	11.26	21.68	30.1	16.61	26.64	17.7	24.1	4.52	14.72
Merged-chr14-78849747-3	chr14	78849640	78849840	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	562.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	5.65	10.82	11.41	8.04	13.91	13.48	16.28	15.11	10.42	4.52	12.56	5.64
Merged-chr2-34790490-3	chr2	34790398	34790598	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 4 of 7)	intron (NM_145522, intron 4 of 7)	9414.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	13.33	13.33	3.42	6.44	12.27	13.17	2.33	6.39	11.21	11.05	7.54	4.07
Merged-chr19-59028169-1	chr19	59028069	59028269	+	848.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175172, exon 8 of 15)	exon (NM_175172, exon 8 of 15)	47900.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.25	5.03	5.7	11.66	8.18	2.2	4.98	8.94	13.77	2.51	6.53	5.64
Merged-chr5-151210599-3	chr5	151210515	151210715	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20422.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	7.27	9.31	29.09	7.64	22.5	19.13	12.95	28.63	29.7	25.11	28.64	18.8
Merged-chr10-69213638-3	chr10	69213544	69213744	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	450.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.85	15.09	5.7	8.45	15.14	6.9	9.63	8.52	11.01	13.05	16.58	10.96
Merged-chr5-140138229-1	chr5	140138129	140138329	+	848.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	36689.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.04	1.26	1.71	8.04	9.41	9.72	9.97	11.47	6.29	8.54	9.55	11.9
Merged-chr10-117418622-3	chr10	117418525	117418725	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28810.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	5.25	9.06	10.27	6.84	14.73	17.87	11.63	7.43	15.74	11.05	11.56	9.08
Merged-chr3-20026668-1	chr3	20026568	20026768	+	848.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	8642.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.25	3.02	2.28	1.61	10.23	4.08	7.31	9.98	5.7	10.54	9.04	6.58
Merged-chr12-24975599-3	chr12	24975512	24975712	+	848.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	680.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	10.9	10.06	3.99	7.64	11.86	10.35	11.29	15.11	19.47	25.61	23.11	7.52
Merged-chrX-167262870-3	chrX	167262750	167262950	+	848.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	intron (NM_001313760, intron 1 of 1)	1479.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	12.52	7.29	14.26	4.42	9.41	13.17	9.3	9.73	13.37	17.57	7.03	6.27
Merged-chr12-118846691-2	chr12	118846580	118846780	+	848.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177082, intron 1 of 2)	intron (NM_177082, intron 1 of 2)	351.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	6.46	11.07	9.7	10.86	9.0	7.53	3.99	7.6	7.87	7.03	12.06	3.76
Merged-chr7-110625820-4	chr7	110625776	110625976	+	848.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1781.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	2.02	3.52	5.13	4.83	0.82	5.64	3.32	3.36	3.74	6.03	2.01	3.76
Merged-chr15-97573234-1	chr15	97573134	97573334	+	848.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	132588.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.81	3.27	2.28	0.8	13.91	14.11	6.98	9.64	5.7	5.52	6.03	2.82
Merged-chr5-122550629-3	chr5	122550548	122550748	+	848.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001358917, exon 19 of 19)	3' UTR (NM_001358917, exon 19 of 19)	-48423.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	16.56	17.1	21.68	14.48	17.18	10.03	13.95	21.22	13.37	14.56	8.54	7.83
Merged-chr1-176835634-3	chr1	176835567	176835767	+	848.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	466.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	14.13	16.6	16.54	20.91	8.18	6.9	21.26	16.21	10.23	15.06	9.04	14.41
Merged-chr2-51108874-2	chr2	51108768	51108968	+	848.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40243.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	25.44	29.68	23.96	47.86	8.18	5.64	5.65	7.51	8.65	4.52	26.63	4.07
Merged-chr9-3023603-3	chr9	3023586	3023786	+	848.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	15057.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	1.62	1.26	3.99	0.4	5.32	0.63	4.65	0.0	3.74	8.54	3.01	5.64
Merged-chr13-74362349-3	chr13	74362266	74362466	+	848.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001168658, exon 4 of 4)	3' UTR (NM_001168658, exon 4 of 4)	1634.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	5.65	9.31	3.99	6.84	11.45	12.54	16.61	11.69	14.95	22.09	14.07	17.23
Merged-chr7-111370726-3	chr7	111370627	111370827	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-248052.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	6.86	11.57	13.69	10.05	9.41	13.48	8.64	9.36	25.18	17.07	25.63	13.47
Merged-chr17-25139000-3	chr17	25138892	25139092	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317404, intron 1 of 24)	B4|SINE|B4	2361.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	9.69	14.59	17.68	7.24	11.05	17.87	7.97	9.25	45.24	33.14	30.15	26.0
Merged-chr16-11418469-3	chr16	11418349	11418549	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 9 of 20)	intron (NM_028964, intron 9 of 20)	12801.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	11.31	11.82	15.97	8.45	20.86	23.52	9.97	16.85	12.59	11.05	22.61	9.4
Merged-chr11-23846629-3	chr11	23846530	23846730	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48640.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	6.06	6.04	6.85	9.65	10.64	6.59	2.66	8.64	16.33	12.05	8.54	15.35
Merged-chr17-43052627-2	chr17	43052528	43052728	+	848.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	36073.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	9.29	8.8	14.83	9.25	18.41	14.11	10.96	27.84	2.75	6.03	6.53	3.13
Merged-chr15-38709761-3	chr15	38709682	38709882	+	848.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18734.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	14.13	7.55	7.99	15.28	10.23	5.33	13.95	17.02	6.1	8.54	15.07	15.04
Merged-chr10-94417875-3	chr10	94417787	94417987	+	848.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-96970.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	16.96	7.04	15.4	14.48	19.64	17.56	10.96	17.64	8.26	12.55	9.04	9.08
Merged-chr15-31225037-3	chr15	31225004	31225204	+	848.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	719.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	8.08	5.28	4.56	6.44	12.27	8.47	13.29	14.19	18.88	13.56	13.57	15.66
Merged-chr12-40583919-3	chr12	40583836	40584036	+	848.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	ORR1D2|LTR|ERVL-MaLR	137883.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	16.96	7.29	16.54	12.47	18.82	13.48	19.93	18.25	16.52	12.05	19.09	7.83
Merged-chr4-111687828-2	chr4	111687730	111687930	+	848.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32180.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	8.88	4.53	3.99	4.42	11.05	5.33	9.97	13.46	12.78	13.56	37.69	13.16
Merged-chr13-101696073-3	chr13	101695972	101696172	+	848.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3442.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.67	9.81	7.99	7.24	16.77	11.29	6.64	9.25	21.64	13.05	16.08	10.96
Merged-chr7-119720291-1	chr7	119720191	119720391	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145585, intron 2 of 4)	CpG	3328.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.81	4.28	6.28	6.03	4.5	7.53	11.29	12.11	9.64	7.03	8.54	7.21
Merged-chr15-88026255-1	chr15	88026155	88026355	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-230312.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	1.21	6.04	1.71	6.84	9.0	5.96	13.62	18.76	0.39	0.5	0.0	2.51
Merged-chr2-93624878-3	chr2	93624763	93624963	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17571.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.85	9.56	17.11	19.71	6.55	13.17	5.65	17.69	13.37	8.03	20.1	9.4
Merged-chr7-25249080-2	chr7	25248964	25249164	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	CpG	1694.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	10.5	12.07	9.7	11.26	13.09	10.03	9.3	11.72	7.28	10.54	12.56	9.4
Merged-chr5-92656405-3	chr5	92656323	92656523	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360020, intron 9 of 9)	intron (NM_001360020, intron 9 of 9)	18704.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	14.13	12.32	13.69	8.85	20.05	8.47	14.95	15.59	12.59	12.55	9.55	10.34
Merged-chr18-80843922-1	chr18	80843822	80844022	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015805, intron 10 of 28)	intron (NM_015805, intron 10 of 28)	90136.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	4.44	2.52	6.85	8.45	4.91	0.94	7.64	5.52	1.38	0.5	2.01	1.88
Merged-chr2-164414800-3	chr2	164414705	164414905	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009036, exon 12 of 12)	3' UTR (NM_009036, exon 12 of 12)	-9645.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	16.56	17.86	40.5	15.28	27.82	36.06	13.62	31.46	4.33	11.55	8.54	8.46
Merged-chr19-21035046-3	chr19	21034938	21035138	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69672.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	15.75	7.8	13.69	14.88	14.32	10.66	13.29	23.66	21.83	10.54	23.62	12.53
Merged-chr5-110809387-1	chr5	110809287	110809487	+	848.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347394, intron 1 of 27)	intron (NM_001347394, intron 1 of 27)	694.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	6.46	4.78	3.99	5.63	4.5	8.15	3.32	4.57	12.19	4.52	12.56	5.01
Merged-chr8-56691866-1	chr8	56691766	56691966	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140732.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.81	0.5	1.71	1.61	7.77	3.14	1.99	7.21	0.2	1.0	1.0	2.51
Merged-chr10-125331554-3	chr10	125331453	125331653	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2590.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	7.67	11.07	22.25	20.51	25.77	10.35	24.25	32.52	16.13	9.04	33.16	11.59
Merged-chr16-50538018-1	chr16	50537918	50538118	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040379, intron 2 of 5)	intron (NR_040379, intron 2 of 5)	9516.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	2.77	4.56	1.61	2.45	6.59	3.65	9.93	2.75	0.0	7.03	1.25
Merged-chr14-31397962-1	chr14	31397862	31398062	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	19715.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	1.62	2.26	9.7	0.8	7.36	4.08	9.3	17.38	3.15	1.51	3.01	4.07
Merged-chr4-155122070-1	chr4	155121970	155122170	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	35466.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.04	1.01	5.7	0.4	7.36	7.21	5.98	10.91	0.98	0.0	2.01	1.88
Merged-chrX-143369946-1	chrX	143369846	143370046	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358592, intron 2 of 11)	Lx7|LINE|L1	24316.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	7.27	1.26	2.85	4.42	9.82	2.2	3.32	8.07	1.18	0.5	6.03	0.0
Merged-chr4-88641687-1	chr4	88641587	88641787	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	2772.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	9.69	10.06	2.28	3.62	6.14	5.64	10.63	4.21	7.47	5.52	7.54	6.58
Merged-chr15-59722746-1	chr15	59722646	59722846	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72213.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.81	5.28	3.99	6.03	9.0	6.27	8.97	9.95	4.52	10.54	5.02	2.82
Merged-chr2-38291699-1	chr2	38291599	38291799	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4315.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.81	1.01	0.0	4.42	7.36	2.51	2.99	7.82	5.51	0.0	3.52	2.19
Merged-chr14-74797583-1	chr14	74797483	74797683	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 13 of 19)	intron (NM_001033439, intron 13 of 19)	65286.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.23	1.76	3.42	4.83	14.32	9.41	15.94	15.36	3.74	4.02	7.54	8.14
Merged-chr3-66973487-1	chr3	66973387	66973587	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302359, exon 5 of 5)	3' UTR (NM_001302359, exon 5 of 5)	5324.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.81	2.01	3.99	7.24	1.64	5.64	11.63	5.19	4.72	4.02	6.03	1.25
Merged-chr5-146231892-1	chr5	146231792	146231992	+	848.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	642.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	2.02	6.04	5.13	6.44	7.36	7.21	10.63	5.92	10.62	12.05	6.03	9.71
Merged-chr1-55576167-1	chr1	55576067	55576267	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170221.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.44	2.26	2.28	7.64	6.14	6.27	7.97	15.64	3.74	4.02	3.01	4.07
Merged-chr5-9103717-2	chr5	9103630	9103830	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	2993.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	13.33	4.78	4.56	6.03	4.09	10.98	4.65	8.21	11.01	9.04	12.56	5.64
Merged-chr5-92934445-3	chr5	92934337	92934537	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077596, intron 3 of 9)	MIR|SINE|MIR	36444.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	54.51	32.7	44.5	37.0	5.73	5.33	3.32	6.67	57.63	39.67	72.36	38.53
Merged-chr2-156862256-2	chr2	156862166	156862366	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	679.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	7.27	5.53	3.99	3.62	6.55	3.45	4.65	11.36	13.18	4.02	9.55	19.11
Merged-chr11-77688020-1	chr11	77687920	77688120	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	1881.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	4.85	4.28	10.27	6.03	5.73	7.53	3.32	6.56	11.6	14.56	5.53	3.45
Merged-chr1-93631528-1	chr1	93631428	93631628	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021537, intron 2 of 11)	intron (NM_021537, intron 2 of 11)	4199.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.63	5.28	19.97	8.45	7.77	17.87	3.32	19.09	7.87	11.05	11.05	4.39
Merged-chr15-64179165-1	chr15	64179065	64179265	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118717.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.04	2.26	3.42	5.63	4.91	1.25	6.64	7.71	2.95	2.01	5.53	5.64
Merged-chr5-16045609-1	chr5	16045509	16045709	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	110918.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.0	1.51	0.0	1.21	9.0	4.7	8.64	8.86	3.15	3.51	6.03	1.57
Merged-chr6-72955076-3	chr6	72954955	72955155	+	847.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3177.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	13.33	5.03	16.54	19.71	19.23	8.15	9.63	25.54	8.46	7.53	18.59	15.98
Merged-chr11-80185350-3	chr11	80185347	80185547	+	847.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028019, intron 1 of 4)	L1MB7|LINE|L1	1575.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.44	9.31	13.69	3.62	18.41	36.37	7.97	1.88	10.42	12.05	7.03	7.52
Merged-chr8-84910167-2	chr8	84910062	84910262	+	847.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010062, intron 5 of 5)	intron (NM_010062, intron 5 of 5)	1538.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	5.25	3.77	6.28	6.84	6.55	13.48	11.29	21.53	12.39	14.06	22.11	11.9
Merged-chr5-107921578-3	chr5	107921467	107921667	+	847.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21039.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	11.71	10.56	7.42	10.05	20.05	10.03	7.31	11.64	19.28	16.57	22.11	5.33
Merged-chr13-41468472-3	chr13	41468387	41468587	+	847.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18873.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.85	5.53	13.12	12.47	26.59	25.4	25.58	32.05	14.36	20.08	18.09	23.18
Merged-chr18-32390198-3	chr18	32390101	32390301	+	847.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11917.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	8.08	6.54	11.98	2.82	4.09	13.48	7.97	9.67	12.0	9.04	12.06	7.83
Merged-chr2-166289428-3	chr2	166289306	166289506	+	847.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	15498.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	8.48	8.8	13.12	4.42	6.14	16.31	9.97	15.17	8.46	5.02	13.57	10.65
Merged-chr10-67187360-2	chr10	67187263	67187463	+	847.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1613.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	8.08	5.79	7.99	8.85	9.82	9.41	7.64	8.97	17.51	15.57	18.09	8.46
Merged-chr4-129746327-3	chr4	129746239	129746439	+	847.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4036.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	10.9	11.57	24.53	7.24	17.59	8.47	7.31	8.78	23.6	28.62	29.65	18.17
Merged-chrX-48429293-3	chrX	48429184	48429384	+	847.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	ID_B1|SINE|B4	33848.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	11.31	10.06	10.27	15.28	15.14	12.23	7.31	13.6	22.03	11.55	31.66	9.08
Merged-chr9-15306971-2	chr9	15306883	15307083	+	847.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199484)	promoter-TSS (NM_001199484)	-535.0	NM_001199484	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	2.83	4.28	7.42	6.84	7.36	8.47	13.29	12.98	5.9	9.54	14.57	10.02
Merged-chr3-116583279-3	chr3	116583170	116583370	+	847.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175413)	TTS (NM_175413)	11617.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	17.36	10.31	19.4	11.26	3.27	3.76	5.98	7.6	20.85	6.03	19.09	7.52
Merged-chr8-82914708-1	chr8	82914608	82914808	+	847.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	51352.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.83	0.5	2.85	0.8	10.23	10.98	5.65	9.84	6.49	0.5	5.53	1.57
Merged-chr2-142900569-3	chr2	142900491	142900691	+	847.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	873.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.65	3.77	13.12	14.48	18.41	8.78	17.61	32.72	15.93	12.55	14.07	6.58
Merged-chr6-120153050-3	chr6	120152972	120153172	+	847.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	B1_Mm|SINE|Alu	-40751.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.83	6.79	14.83	8.85	16.36	19.76	19.6	6.45	6.29	8.54	4.02	8.14
Merged-chr6-136658762-3	chr6	136658638	136658838	+	847.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	RSINE1|SINE|B4	3155.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.44	11.82	11.41	19.71	6.95	7.21	11.29	13.96	7.87	7.53	7.03	8.14
Merged-chr1-6624750-3	chr1	6624639	6624839	+	847.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001244693, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-105312.0	NR_045189	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	9.69	12.32	19.97	6.84	11.45	5.64	8.97	21.59	20.06	13.05	27.13	14.72
Merged-chr19-12806413-1	chr19	12806313	12806513	+	847.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 2 of 8)	intron (NM_134152, intron 2 of 8)	7834.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	3.23	5.03	11.98	6.84	9.0	10.98	4.98	9.84	1.18	2.51	5.53	1.57
Merged-chr18-83713966-3	chr18	83713846	83714046	+	847.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	372616.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	10.9	19.37	10.84	20.51	16.36	19.13	31.22	21.39	8.26	11.05	14.57	4.39
Merged-chr5-101995638-2	chr5	101995543	101995743	+	847.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	74278.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	9.29	6.04	7.42	3.62	12.68	15.37	7.64	8.36	21.44	16.07	17.08	10.65
Merged-chr1-74390772-2	chr1	74390676	74390876	+	847.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-833.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	10.09	3.52	6.28	7.24	8.18	11.29	9.3	8.36	17.7	11.55	17.59	10.02
Merged-chr4-12557285-1	chr4	12557185	12557385	+	847.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-349552.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	4.85	4.28	6.85	8.04	7.77	5.96	16.94	10.46	4.92	5.02	3.52	5.95
Merged-chr4-47349908-3	chr4	47349811	47350011	+	847.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3311.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	9.69	18.61	4.56	12.87	14.73	11.92	18.93	17.36	22.03	17.07	17.59	9.4
Merged-chr3-95674929-3	chr3	95674893	95675093	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	12924.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	7.67	5.79	5.7	14.88	10.23	8.47	4.98	5.41	12.39	11.55	6.03	4.7
Merged-chr4-19673192-3	chr4	19673100	19673300	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177327, exon 4 of 25)	exon (NM_177327, exon 4 of 25)	35804.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	16.15	7.8	1.71	12.87	18.0	21.01	9.97	25.18	21.64	12.55	23.62	17.86
Merged-chr8-119837897-4	chr8	119837746	119837946	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2733.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	8.08	9.56	8.56	5.23	15.55	10.35	4.65	5.1	14.16	8.03	10.55	14.1
Merged-chr10-62449663-3	chr10	62449572	62449772	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	66.0	NM_001359806	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	21.4	17.86	6.85	12.47	20.46	21.32	18.27	11.21	29.5	19.08	27.64	15.66
Merged-chr7-19577658-3	chr7	19577478	19577678	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022409, exon 1 of 3)	exon (NM_022409, exon 1 of 3)	291.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	10.9	7.55	7.99	8.04	4.09	7.84	0.66	7.23	8.65	7.53	4.52	10.96
Merged-chr19-17361396-3	chr19	17361311	17361511	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-4744.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	19.79	36.22	26.81	30.97	17.18	16.31	13.62	22.93	8.26	9.04	11.56	6.58
Merged-chr11-44425885-1	chr11	44425785	44425985	+	847.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25822.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.4	2.26	1.14	0.8	0.0	0.63	0.66	2.92	15.34	8.54	10.55	14.41
Merged-chr11-81954553-3	chr11	81954422	81954622	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	13874.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	14.54	12.83	31.95	13.67	6.55	9.72	9.97	4.74	7.87	7.03	11.05	7.21
Merged-chr7-116307548-3	chr7	116307456	116307656	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305185, intron 3 of 26)	CpG	820.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	11.31	17.86	17.68	12.87	26.18	10.66	12.95	10.01	12.39	13.56	12.06	8.46
Merged-chr2-29465969-1	chr2	29465869	29466069	+	847.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290489, intron 2 of 6)	L2a|LINE|L2	9325.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	4.44	3.02	11.41	1.61	7.36	10.03	8.64	10.29	4.52	2.01	3.01	4.39
Merged-chr7-120984663-2	chr7	120984551	120984751	+	847.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	2142.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	9.29	2.26	4.56	6.44	15.55	6.59	6.31	18.93	6.88	6.03	17.59	13.78
Merged-chr13-91640413-3	chr13	91640306	91640506	+	847.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-101115.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	6.46	13.08	13.12	20.91	38.46	30.1	33.22	52.32	13.77	5.52	14.07	13.78
Merged-chr16-20538131-3	chr16	20538075	20538275	+	847.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	2695.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	12.11	7.29	11.41	6.44	11.05	22.26	10.3	14.19	12.19	7.03	17.08	11.9
Merged-chr11-100725094-3	chr11	100724992	100725192	+	847.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	11242.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	16.56	6.79	15.4	14.88	8.18	15.05	9.97	8.36	15.14	6.53	15.07	3.76
Merged-chr17-5220654-3	chr17	5220544	5220744	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	198123.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	8.48	5.03	12.55	16.89	15.96	14.74	15.28	28.37	16.72	7.53	17.08	11.59
Merged-chr9-65598949-3	chr9	65598843	65599043	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	11783.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	2.83	15.85	11.98	19.71	10.64	17.25	7.64	6.42	9.83	19.08	7.54	10.34
Merged-chr9-111035849-3	chr9	111035751	111035951	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	16559.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	12.52	7.04	16.54	7.64	22.5	12.54	9.3	12.53	15.14	17.07	20.6	16.6
Merged-chr1-164586718-3	chr1	164586613	164586813	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83406.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	8.48	10.31	13.69	17.29	9.41	5.96	11.96	18.98	9.64	5.52	11.05	9.71
Merged-chr9-107312978-3	chr9	107312871	107313071	+	847.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16312.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	8.88	10.31	18.83	2.41	12.68	18.81	11.29	4.93	34.42	31.63	41.2	27.57
Merged-chr6-15792979-3	chr6	15792870	15793070	+	847.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	72309.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.67	4.28	17.11	15.28	9.82	9.09	3.99	10.12	16.33	10.54	25.12	14.41
Merged-chr6-42693077-3	chr6	42692967	42693167	+	847.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	33.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	8.08	6.54	8.56	17.29	24.55	33.24	29.9	33.73	15.93	19.08	25.12	15.04
Merged-chr6-5496383-3	chr6	5496330	5496530	+	847.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013743)	promoter-TSS (NM_013743)	-152.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	7.27	4.78	4.56	8.85	14.32	9.72	14.95	15.7	7.08	4.52	18.09	10.65
Merged-chr1-194986006-3	chr1	194985918	194986118	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9059.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.04	6.79	13.12	8.85	28.23	20.38	17.61	21.67	17.51	19.58	17.59	8.14
Merged-chr2-112197058-3	chr2	112196964	112197164	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	41166.0	NM_001011802	258022.0	Mm.377330	NM_001011802	ENSMUSG00000049758	Olfr1318	MOR245-16	olfactory receptor 1318	protein-coding	26.25	11.32	12.55	16.09	12.68	15.68	7.64	18.31	23.41	29.12	23.11	5.01
Merged-chr9-114748136-3	chr9	114747996	114748196	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	16893.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	8.48	11.57	7.99	3.62	2.45	7.21	3.99	13.91	18.29	15.06	22.11	13.16
Merged-chr1-162550040-3	chr1	162549939	162550139	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1694.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	17.36	10.06	1.14	13.27	13.09	11.29	1.0	6.5	17.31	19.58	20.6	8.77
Merged-chr15-86182047-3	chr15	86181979	86182179	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-3649.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	20.59	11.32	14.83	7.64	17.59	10.35	13.95	19.15	10.82	13.05	11.56	9.08
Merged-chr15-38247313-3	chr15	38247211	38247411	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28108.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	11.31	9.31	15.97	14.48	15.55	17.25	9.97	10.49	22.03	31.63	23.11	10.65
Merged-chr8-105553041-3	chr8	105552948	105553148	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	13016.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	16.56	14.09	22.25	6.84	20.05	14.42	19.27	7.29	9.64	4.02	18.59	5.01
Merged-chr2-25592023-3	chr2	25591923	25592123	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-11924.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	11.31	5.28	13.69	4.02	11.86	12.86	14.62	21.36	15.74	6.53	17.59	14.1
Merged-chr7-13046326-3	chr7	13046229	13046429	+	847.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	-8054.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	16.56	7.29	9.13	11.66	17.18	21.32	7.31	17.16	16.72	11.05	30.15	15.04
Merged-chr3-61393174-3	chr3	61393051	61393251	+	847.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	28644.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.06	10.31	4.56	5.63	17.18	25.71	18.6	16.37	24.39	32.64	12.06	10.96
Merged-chr1-80641988-3	chr1	80641869	80642069	+	847.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23383.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	8.88	7.8	9.13	0.8	14.73	20.07	4.98	9.39	13.96	20.59	15.07	10.65
Merged-chr2-163698221-1	chr2	163698121	163698321	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	4184.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.04	6.29	7.42	4.83	12.68	4.39	2.33	6.84	5.51	6.03	3.01	5.33
Merged-chr12-9052253-2	chr12	9052155	9052355	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22258.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	6.06	2.52	5.13	3.62	8.18	14.74	6.31	16.32	8.85	15.06	14.07	10.96
Merged-chr6-120956448-2	chr6	120956364	120956564	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-2380.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	2.42	5.28	2.28	4.02	20.05	7.53	6.31	8.5	11.41	6.53	8.04	8.14
Merged-chr2-172477972-1	chr2	172477872	172478072	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5418.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	4.04	3.77	7.42	3.62	12.27	5.64	8.64	9.14	2.56	5.02	4.52	4.39
Merged-chr8-7954189-2	chr8	7954109	7954309	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	706564.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.42	1.01	3.42	4.02	7.36	5.64	4.65	7.88	14.16	4.52	18.59	5.64
Merged-chr1-183804417-2	chr1	183804312	183804512	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55435.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	10.9	1.01	3.42	2.01	2.05	7.53	9.63	11.41	10.23	4.52	18.09	11.28
Merged-chr14-122638352-2	chr14	122638247	122638447	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	104019.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	6.86	7.04	7.99	10.46	17.18	10.03	12.95	15.76	13.37	13.05	14.57	3.76
Merged-chr11-48813293-1	chr11	48813193	48813393	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	4098.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	7.27	2.26	3.42	1.61	7.36	1.88	6.98	6.25	4.33	5.02	6.03	3.13
Merged-chr4-86541785-2	chr4	86541681	86541881	+	847.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	16522.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	16.56	6.79	6.85	12.87	18.41	14.11	10.63	17.47	5.51	1.0	2.01	2.51
Merged-chr13-47277844-1	chr13	47277744	47277944	+	847.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83841.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.27	4.53	1.14	0.8	5.73	0.63	1.0	1.77	12.59	10.54	3.01	5.01
Merged-chr1-166442238-2	chr1	166442140	166442340	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13248.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	2.02	4.28	4.56	4.42	5.32	6.59	7.31	8.02	13.57	4.02	19.09	5.33
Merged-chr16-97995886-2	chr16	97995786	97995986	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1429.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	6.46	3.77	3.42	6.03	9.41	4.7	7.97	8.27	16.13	9.04	18.09	10.02
Merged-chr16-3929737-2	chr16	3929635	3929835	+	847.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20726.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	9.69	3.02	6.85	10.05	17.59	4.39	4.32	10.26	7.67	9.04	1.51	1.88
Merged-chr11-44519364-2	chr11	44519285	44519485	+	847.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166553)	promoter-TSS (NM_001166553)	8.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	10.9	8.8	1.71	10.86	13.09	14.74	9.63	6.56	17.9	10.54	7.54	8.14
Merged-chr9-41168824-1	chr9	41168724	41168924	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10762.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.42	2.77	3.99	2.41	15.55	6.59	6.31	9.95	6.69	4.52	4.52	1.57
Merged-chr13-9189269-1	chr13	9189169	9189369	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-87256.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.65	3.27	7.42	8.04	9.0	8.15	5.65	9.39	6.29	2.01	5.02	4.39
Merged-chr6-135907706-2	chr6	135907600	135907800	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	248787.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.0	5.53	5.13	4.02	5.73	8.15	1.66	6.67	19.67	18.58	31.66	20.68
Merged-chr11-102221923-1	chr11	102221823	102222023	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	8227.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.81	7.29	2.85	2.41	9.41	3.14	3.99	2.66	4.13	4.02	4.52	2.51
Merged-chrX-166253368-4	chrX	166253299	166253499	+	847.480286	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	14456.0	NM_001177962	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.81	4.28	14.83	6.03	1.23	6.59	13.95	4.43	6.69	11.05	16.08	7.83
Merged-chr8-10835793-3	chr8	10835686	10835886	+	847.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46668.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	14.54	14.34	30.23	12.87	13.09	18.19	7.31	11.3	8.06	11.05	21.1	11.28
Merged-chrX-162915893-3	chrX	162915795	162915995	+	847.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358398, intron 4 of 18)	intron (NM_001358398, intron 4 of 18)	13724.0	NR_033143	55936.0	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	4.04	10.56	11.41	8.85	8.59	10.66	5.31	9.9	16.72	12.55	23.62	12.22
Merged-chr5-151187167-2	chr5	151187075	151187275	+	847.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	3018.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.81	4.53	15.4	4.83	8.18	4.7	13.62	16.4	14.75	14.06	18.09	16.92
Merged-chrX-134602051-2	chrX	134601962	134602162	+	847.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313717, intron 1 of 2)	intron (NM_001313717, intron 1 of 2)	883.0	NM_001313717	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	3.23	7.29	3.99	2.41	11.45	9.72	9.63	11.89	11.21	8.54	12.06	15.04
Merged-chr18-69403666-2	chr18	69403549	69403749	+	847.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	57489.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	10.9	10.06	10.27	21.32	18.0	25.4	17.61	36.53	4.52	2.01	5.02	4.39
Merged-chr6-136861226-1	chr6	136861126	136861326	+	847.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3626.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	3.63	6.79	2.28	7.24	20.05	12.86	7.64	13.26	3.74	7.03	3.52	4.07
Merged-chr1-87634467-3	chr1	87634454	87634654	+	847.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14242.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	3.63	7.8	3.42	3.62	6.14	3.76	4.98	3.76	8.46	7.53	7.03	5.33
Merged-chr8-14643231-3	chr8	14643122	14643322	+	847.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-245314.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.48	15.09	10.84	8.85	9.82	14.42	12.29	14.3	40.52	31.63	26.13	27.88
Merged-chr19-9976378-3	chr19	9976275	9976475	+	847.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4225.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	10.5	9.31	11.98	8.45	16.77	19.13	17.94	25.71	18.29	13.56	24.62	7.21
Merged-chr10-96620084-5	chr10	96619967	96620167	+	847.33905	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3066.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.48	9.56	14.83	6.84	11.45	12.54	11.96	12.39	9.24	12.55	7.54	3.45
Merged-chr9-21003475-2	chr9	21003375	21003575	+	847.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357899, intron 3 of 8)	intron (NM_001357899, intron 3 of 8)	738.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	9.29	12.32	7.42	3.22	9.82	12.86	10.96	12.11	14.16	8.54	6.03	5.64
Merged-chr1-24698143-1	chr1	24698043	24698243	+	847.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	L1M4|LINE|L1	19225.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.23	2.01	1.14	4.42	3.27	2.82	12.62	3.48	5.11	1.0	2.01	5.64
Merged-chr2-153791610-3	chr2	153791512	153791712	+	847.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036629, intron 5 of 7)	intron (NR_036629, intron 5 of 7)	10733.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	9.29	6.79	2.28	5.23	37.23	55.5	35.21	52.15	38.35	20.59	50.75	29.76
Merged-chr3-107771176-3	chr3	107771073	107771273	+	847.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10704.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	14.54	9.81	16.54	10.86	9.0	13.8	7.64	13.71	8.06	9.04	16.08	16.29
Merged-chr2-119300329-3	chr2	119300208	119300408	+	847.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11566.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	6.46	10.06	13.12	7.64	18.41	16.31	7.97	13.35	14.55	17.07	25.63	7.21
Merged-chr1-132054613-3	chr1	132054530	132054730	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114662, intron 3 of 9)	B3|SINE|B2	13432.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	16.15	11.07	26.24	19.31	5.32	12.23	5.31	8.13	8.26	3.51	9.55	6.27
Merged-chr16-45024106-3	chr16	45024003	45024203	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69908.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	23.82	18.36	5.7	9.65	9.0	21.01	5.65	15.31	18.49	25.11	27.64	18.17
Merged-chr2-124928529-3	chr2	124928423	124928623	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139604.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	8.48	9.31	9.7	9.65	13.09	19.76	18.27	12.14	17.11	16.07	11.05	10.96
Merged-chr9-110982805-3	chr9	110982720	110982920	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028838, exon 9 of 9)	3' UTR (NM_028838, exon 9 of 9)	-6679.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	23.02	10.56	35.37	20.11	26.59	26.97	12.29	37.15	9.24	0.5	5.53	6.27
Merged-chr2-68436414-3	chr2	68436315	68436515	+	847.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	35566.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	20.59	17.86	11.41	7.24	9.0	16.62	8.97	7.4	16.72	21.59	13.57	10.65
Merged-chr1-170545556-2	chr1	170545456	170545656	+	847.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	L1MC4|LINE|L1	11554.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	1.51	1.14	0.0	11.05	10.98	4.32	8.1	13.18	6.03	19.6	10.02
Merged-chr13-20184513-2	chr13	20184410	20184610	+	847.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	9.29	5.28	9.13	2.82	7.77	10.35	4.65	9.42	12.0	9.54	3.01	7.21
Merged-chr3-81933004-3	chr3	81932940	81933140	+	847.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	439.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	9.69	5.79	11.41	8.04	16.36	18.19	8.97	16.49	27.93	14.56	14.57	19.42
Merged-chr6-31314194-3	chr6	31314100	31314300	+	847.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	84573.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	8.48	5.03	11.98	16.09	13.09	14.74	10.96	22.46	16.33	10.54	17.59	15.35
Merged-chr19-43898700-3	chr19	43898604	43898804	+	847.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-18936.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	12.92	12.32	17.11	9.25	30.27	20.38	18.6	18.59	11.8	10.04	18.09	10.02
Merged-chr10-4601260-3	chr10	4601158	4601358	+	847.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10731.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	8.88	13.08	5.7	3.62	16.36	15.99	6.64	18.34	18.49	10.04	10.55	2.82
Merged-chr5-105595362-2	chr5	105595253	105595453	+	847.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75882.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	15.34	7.55	13.69	10.05	5.32	21.01	7.64	10.12	23.8	25.61	15.58	18.48
Merged-chr3-89157194-3	chr3	89157109	89157309	+	847.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008227, intron 1 of 7)	RSINE1|SINE|B4	2948.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	4.04	9.06	10.84	4.42	9.82	10.66	1.0	9.67	11.6	3.51	3.01	10.96
Merged-chr19-37435458-3	chr19	37435383	37435583	+	847.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008245, intron 1 of 3)	CpG	642.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	10.5	21.88	9.7	14.48	8.59	3.14	14.95	11.92	11.41	5.02	13.57	11.9
Merged-chrY-1163219-3	chrY	1163120	1163320	+	847.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009484, intron 14 of 26)	Lx8b|LINE|L1	82539.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	13.73	4.02	7.99	10.86	26.59	13.8	9.63	27.0	28.32	16.57	34.67	10.96
Merged-chr19-12558371-3	chr19	12558270	12558470	+	847.072205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-15140.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	7.67	6.54	11.98	9.65	24.55	16.62	6.98	14.33	16.92	16.57	19.6	15.35
Merged-chr11-101417379-3	chr11	101417297	101417497	+	847.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144829)	promoter-TSS (NM_144829)	36.0	NM_144829	69684.0	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	12.52	6.54	7.99	17.7	13.5	10.35	6.31	9.7	20.65	16.57	16.08	13.16
Merged-chr5-140616129-6	chr5	140615996	140616196	+	847.013916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008494)	TTS (NM_008494)	8755.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.46	6.04	7.42	7.24	4.09	5.64	2.33	2.38	4.33	3.51	6.53	5.33
Merged-chr3-90373611-2	chr3	90373524	90373724	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16314.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	18.17	8.3	9.7	6.44	2.45	15.68	1.66	9.42	7.28	5.52	10.55	6.27
Merged-chr2-123887906-1	chr2	123887806	123888006	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-202063.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	1.62	4.53	5.7	4.42	10.64	8.47	2.99	12.98	6.69	2.01	7.54	3.45
Merged-chr2-101192965-1	chr2	101192865	101193065	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-431783.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	1.62	0.0	0.0	0.8	3.27	7.84	2.33	10.09	3.34	8.54	3.52	3.76
Merged-chr4-86421575-1	chr4	86421475	86421675	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029967, intron 25 of 27)	Lx8|LINE|L1	136728.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.81	4.02	6.85	5.23	4.91	2.82	4.98	9.98	12.98	4.02	5.53	3.45
Merged-chr1-106199953-3	chr1	106199835	106200035	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	28066.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	11.71	7.55	16.54	13.67	9.0	4.7	15.61	12.84	16.52	12.05	22.61	11.9
Merged-chr13-43164360-1	chr13	43164260	43164460	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252639, intron 4 of 7)	intron (NM_001252639, intron 4 of 7)	7141.0	NM_001252639	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	2.02	1.51	2.28	6.44	8.18	10.03	6.64	8.44	1.18	1.0	0.0	0.94
Merged-chr5-38470080-2	chr5	38470039	38470239	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145559, intron 3 of 10)	intron (NM_145559, intron 3 of 10)	10167.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	7.67	2.52	2.28	8.04	3.68	4.39	1.0	5.13	12.78	3.01	6.03	2.51
Merged-chr15-25796551-1	chr15	25796451	25796651	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001353142, intron 9 of 20)	B3A|SINE|B2	22538.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.46	7.29	7.42	4.83	2.86	13.48	1.66	9.28	5.51	9.04	8.04	1.25
Merged-chr1-80661964-3	chr1	80661922	80662122	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	3330.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.02	4.02	5.7	4.02	6.14	7.53	6.31	1.6	7.28	7.03	9.55	3.45
Merged-chr3-136896487-1	chr3	136896387	136896587	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	226421.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.42	2.01	1.14	4.02	1.23	4.08	6.98	9.76	5.9	6.53	6.53	0.63
Merged-chr9-62908213-1	chr9	62908113	62908313	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-46189.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	1.62	1.01	6.85	3.22	0.41	8.47	2.66	9.34	2.56	3.01	6.03	8.46
Merged-chr1-131394701-1	chr1	131394601	131394801	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-115138.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	7.27	3.77	1.14	6.44	5.73	4.7	2.66	7.96	6.88	9.04	15.07	4.07
Merged-chr5-130254469-3	chr5	130254372	130254572	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023248, intron 1 of 4)	intron (NM_023248, intron 1 of 4)	1058.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	13.33	10.31	2.28	13.27	8.18	14.42	5.98	6.62	16.72	20.59	23.62	5.95
Merged-chr7-109170623-3	chr7	109170523	109170723	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302206)	promoter-TSS (NM_001302206)	-104.0	NM_057173	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	14.54	7.8	2.28	9.25	6.55	13.48	9.63	13.65	12.19	11.05	14.07	4.07
Merged-chr4-149836249-2	chr4	149836155	149836355	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-61988.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.04	4.28	3.42	0.0	7.77	4.7	2.99	7.91	15.34	8.03	12.56	4.39
Merged-chr16-33902093-3	chr16	33901999	33902199	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	64939.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	10.5	7.8	14.26	13.27	13.09	5.33	10.3	26.27	13.18	21.09	27.13	12.22
Merged-chr4-52429624-1	chr4	52429524	52429724	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045175)	TTS (NR_045175)	9340.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	6.06	4.53	3.42	2.41	3.27	8.78	6.98	11.52	3.34	2.51	3.52	5.01
Merged-chr9-52082562-1	chr9	52082462	52082662	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001104616, intron 12 of 13)	intron (NM_001104616, intron 12 of 13)	-33061.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	5.25	1.51	17.68	7.24	2.86	7.84	4.32	11.69	7.87	2.51	9.55	3.45
Merged-chr16-25052602-1	chr16	25052502	25052702	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7037.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	1.62	2.52	1.14	3.22	11.86	5.96	7.64	9.22	7.47	2.01	3.52	6.27
Merged-chr9-84569744-1	chr9	84569644	84569844	+	847.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-204654.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.0	0.0	0.0	0.4	0.82	0.0	1.99	1.04	7.08	4.52	26.63	10.34
Merged-chr7-34235053-1	chr7	34234953	34235153	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4717.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	2.42	0.5	2.28	3.22	7.36	2.2	4.32	8.05	1.57	2.01	5.02	3.76
Merged-chr8-109705908-1	chr8	109705808	109706008	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029468)	promoter-TSS (NM_029468)	-111.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	18.57	23.39	14.83	13.67	18.0	10.03	27.24	11.24	17.7	27.11	15.58	15.98
Merged-chr7-4647473-3	chr7	4647380	4647580	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	11470.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	15.75	18.36	6.28	16.09	6.95	4.7	4.98	8.86	13.96	18.08	11.05	8.77
Merged-chr17-13746543-1	chr17	13746443	13746643	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-13998.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	1.62	2.52	1.14	4.83	0.41	2.2	5.98	5.83	2.16	1.0	6.53	3.45
Merged-chr8-79384829-2	chr8	79384731	79384931	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	14637.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	9.29	8.8	5.7	4.83	2.45	9.41	1.66	9.14	6.88	1.0	3.52	4.07
Merged-chr15-88868023-3	chr15	88867931	88868131	+	846.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	5837.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	11.31	23.14	22.82	11.26	13.5	22.26	8.64	7.77	22.42	18.58	12.56	12.53
Merged-chr1-60097641-3	chr1	60097506	60097706	+	846.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139150)	promoter-TSS (NM_139150)	301.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	15.34	12.07	2.28	12.87	11.86	13.8	6.31	6.06	7.47	8.54	12.06	6.27
Merged-chr7-80144010-3	chr7	80143922	80144122	+	846.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28672.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	17.36	15.59	17.68	12.47	12.68	12.86	8.64	14.16	9.83	10.04	16.08	9.4
Merged-chr3-81996149-2	chr3	81996044	81996244	+	846.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021370)	promoter-TSS (NM_021370)	-778.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	7.27	2.52	3.42	2.82	15.96	10.35	11.29	19.32	15.14	10.04	12.06	5.95
Merged-chr2-26188753-3	chr2	26188656	26188856	+	846.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	17819.0	NM_001039653	16871.0	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	12.11	17.61	12.55	24.53	13.91	36.69	11.29	12.31	9.83	8.03	18.09	8.77
Merged-chr13-96106620-2	chr13	96106518	96106718	+	846.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25959.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	8.48	4.02	3.42	6.44	7.77	8.78	3.65	8.02	12.0	25.61	30.65	13.47
Merged-chr5-138998166-3	chr5	138998065	138998265	+	846.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3212.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	20.19	10.06	12.55	6.03	14.32	13.48	3.99	12.62	14.95	13.56	16.08	13.16
Merged-chr4-123957396-3	chr4	123957305	123957505	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39972.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.67	9.56	7.99	10.46	7.36	17.87	13.62	14.55	13.18	17.07	15.07	17.23
Merged-chr10-80323051-3	chr10	80322939	80323139	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008793, exon 12 of 15)	exon (NM_008793, exon 12 of 15)	-2491.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	8.48	15.09	6.28	14.48	16.77	10.66	9.3	12.56	16.92	7.53	15.07	10.65
Merged-chr2-84705614-3	chr2	84705529	84705729	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144887, intron 2 of 11)	intron (NM_144887, intron 2 of 11)	9535.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	10.09	5.53	15.97	14.88	12.68	16.31	12.95	20.75	16.13	20.08	10.05	9.4
Merged-chr11-102317313-3	chr11	102317227	102317427	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-40.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	7.27	8.8	9.13	18.1	7.77	15.68	6.31	5.38	21.64	12.05	15.07	14.72
Merged-chr13-51350997-3	chr13	51350908	51351108	+	846.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57610.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	17.36	16.6	14.83	21.32	15.14	9.72	14.62	15.95	7.87	14.56	13.06	7.21
Merged-chr6-53968651-3	chr6	53968506	53968706	+	846.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	10067.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	9.69	7.8	17.68	9.65	19.23	10.03	6.98	18.28	14.95	12.05	28.14	10.34
Merged-chr15-103313610-2	chr15	103313527	103313727	+	846.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013866)	TTS (NM_013866)	-3189.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	6.86	5.79	10.84	8.85	16.77	29.48	14.28	8.47	16.52	27.11	11.05	6.89
Merged-chr15-55563910-3	chr15	55563813	55564013	+	846.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168250, intron 4 of 16)	intron (NM_001168250, intron 4 of 16)	6505.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	15.34	22.39	8.56	7.64	9.41	11.6	7.31	10.18	20.65	11.55	11.05	8.14
Merged-chr8-108780354-3	chr8	108780241	108780441	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	65697.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	19.79	16.6	18.25	25.74	13.5	16.93	11.96	21.31	8.65	9.04	14.07	3.45
Merged-chr2-163951916-3	chr2	163951806	163952006	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33223.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	10.09	11.07	21.68	12.07	9.0	14.11	16.61	15.56	16.33	14.56	19.6	8.77
Merged-chr13-45255481-3	chr13	45255364	45255564	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134278.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	10.5	5.03	24.53	12.07	33.96	21.64	31.22	37.04	12.78	13.56	16.08	10.65
Merged-chr18-46770486-3	chr18	46770384	46770584	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009681, intron 3 of 5)	intron (NM_009681, intron 3 of 5)	28608.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	10.09	9.31	17.68	12.07	11.05	9.72	11.96	18.84	13.57	7.03	24.62	8.14
Merged-chr3-149349429-3	chr3	149349344	149349544	+	846.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74707.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	7.67	11.57	14.26	14.88	17.59	22.58	10.96	12.81	11.41	10.54	10.05	5.95
Merged-chr10-121366593-2	chr10	121366482	121366682	+	846.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	1492.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.46	9.81	23.96	8.45	6.55	4.39	2.99	5.02	19.47	8.03	11.56	9.71
Merged-chr19-32887435-2	chr19	32887331	32887531	+	846.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129854.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	10.09	10.82	5.7	8.04	11.86	10.66	14.28	10.93	3.34	9.04	4.02	3.45
Merged-chr3-109026784-3	chr3	109026694	109026894	+	846.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	813.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	6.86	3.27	13.12	17.29	0.41	10.66	4.98	6.06	11.8	10.04	25.63	15.98
Merged-chr1-72236517-3	chr1	72236427	72236627	+	846.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7466.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	15.34	8.8	9.13	7.24	12.27	12.23	18.6	13.09	12.98	7.03	14.57	8.46
Merged-chr5-34636661-3	chr5	34636576	34636776	+	846.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356979, exon 2 of 13)	exon (NM_001356979, exon 2 of 13)	536.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	9.29	7.55	5.7	8.04	21.68	14.42	11.29	8.36	12.98	11.05	10.05	11.28
Merged-chr18-60808500-7	chr18	60808481	60808681	+	846.719055	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 3 of 8)	intron (NM_001042605, intron 3 of 8)	-3495.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	11.71	5.28	6.85	5.23	3.68	6.27	7.64	0.36	12.78	6.03	10.05	5.64
Merged-chr6-122600359-3	chr6	122600276	122600476	+	846.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 1 of 7)	MRLTR33|LTR|ERVK	2068.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	9.29	14.59	13.12	20.51	16.36	27.91	9.3	8.58	10.23	10.04	8.04	9.4
Merged-chr2-170343926-4	chr2	170343815	170344015	+	846.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12446.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	9.69	5.53	6.28	7.24	5.73	3.76	5.98	8.78	10.03	14.06	4.52	6.89
Merged-chr10-25117779-1	chr10	25117679	25117879	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82391.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.04	1.26	4.56	1.61	10.23	6.9	10.63	6.59	8.46	7.53	10.05	1.57
Merged-chr4-45528262-1	chr4	45528162	45528362	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2566.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.65	5.03	4.56	9.65	11.05	4.08	8.97	7.43	6.88	4.02	7.54	1.88
Merged-chr1-174236195-3	chr1	174236099	174236299	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011465, intron 42 of 51)	intron (NM_011465, intron 42 of 51)	14777.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	12.52	12.32	28.52	16.49	16.36	24.77	27.24	30.48	12.39	14.06	26.63	8.77
Merged-chr18-5941434-3	chr18	5941364	5941564	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	194634.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	10.09	10.31	13.12	6.03	3.68	12.23	9.3	9.9	6.1	8.54	14.57	9.4
Merged-chr7-84196421-1	chr7	84196321	84196521	+	846.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44528.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.83	4.02	0.0	0.8	2.45	6.27	3.65	2.07	12.39	23.6	18.09	6.27
Merged-chr19-55233767-3	chr19	55233684	55233884	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	7452.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	6.46	7.29	13.12	12.07	15.14	17.56	12.62	12.22	12.98	13.05	12.56	5.95
Merged-chr8-126881976-3	chr8	126881898	126882098	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	32978.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	7.67	6.79	7.99	8.45	38.86	25.4	11.29	31.4	33.04	35.15	34.67	16.29
Merged-chr11-3127530-3	chr11	3127424	3127624	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003517, exon 3 of 7)	non-coding (NR_003517, exon 3 of 7)	3503.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	32.71	41.0	20.54	24.94	65.05	47.98	42.85	43.09	7.28	13.56	3.52	9.08
Merged-chr10-96188298-2	chr10	96188212	96188412	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37895.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.08	1.76	17.68	8.04	15.14	17.56	7.97	17.52	11.21	18.58	11.05	6.58
Merged-chr18-38928887-1	chr18	38928787	38928987	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10188.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	6.06	2.01	6.85	2.41	9.0	3.14	9.63	9.22	1.57	0.5	4.02	5.01
Merged-chr17-6749419-4	chr17	6749341	6749541	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	33339.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	10.5	4.53	9.7	5.63	9.82	12.86	4.98	6.08	7.87	10.04	9.55	5.01
Merged-chr13-92680247-3	chr13	92680140	92680340	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	69102.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	12.11	12.07	9.13	3.22	6.14	14.74	8.3	15.06	9.44	9.04	7.54	13.78
Merged-chr6-88500282-3	chr6	88500164	88500364	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	18536.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	10.09	8.8	2.85	4.83	9.41	12.23	3.99	6.11	13.57	7.53	14.57	2.19
Merged-chr17-37051921-2	chr17	37051820	37052020	+	846.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5954.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	16.56	8.8	18.83	10.05	7.36	9.09	4.65	14.24	17.31	9.04	10.05	8.14
Merged-chr16-50061615-2	chr16	50061494	50061694	+	846.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	11258.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	6.06	3.27	10.27	0.8	12.27	12.86	11.63	8.16	16.33	10.04	9.55	6.58
Merged-chr3-103841127-2	chr3	103841019	103841219	+	846.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142960, intron 3 of 3)	RLTR45|LTR|ERVK	8423.0	NM_001142960	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	22.21	19.87	20.54	15.69	5.32	2.82	7.31	3.7	12.59	13.05	17.08	8.46
Merged-chr11-109480593-2	chr11	109480452	109480652	+	846.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5340.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	12.11	7.29	11.41	5.23	6.55	6.9	8.64	11.3	4.72	9.04	8.54	16.92
Merged-chr1-180312454-3	chr1	180312302	180312502	+	846.652344	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18074.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	18.17	9.31	22.25	10.05	9.41	2.51	14.62	6.59	12.0	8.54	16.08	4.39
Merged-chr13-12542270-3	chr13	12542188	12542388	+	846.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21838.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	12.11	7.29	10.27	18.1	7.36	15.05	14.95	20.72	16.33	14.06	17.59	11.59
Merged-chr7-75633128-2	chr7	75633042	75633242	+	846.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	Lx9|LINE|L1	177608.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	13.33	13.83	6.28	8.45	11.86	16.62	4.32	15.06	5.9	1.0	5.02	3.13
Merged-chr15-80458206-2	chr15	80458093	80458293	+	846.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	-19590.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	4.04	2.26	5.13	9.65	13.5	10.35	3.99	6.59	10.03	12.55	9.55	5.64
Merged-chr15-6707689-3	chr15	6707582	6707782	+	846.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-699.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	10.9	10.06	14.83	17.7	15.14	9.41	15.28	13.04	10.03	11.05	11.05	7.21
Merged-chr6-30403674-3	chr6	30403567	30403767	+	846.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1812.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	18.17	9.06	10.84	9.65	9.82	18.81	6.64	11.55	17.7	13.05	15.07	4.39
Merged-chr2-27027513-2	chr2	27027398	27027598	+	846.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177627, intron 1 of 8)	intron (NM_001177627, intron 1 of 8)	500.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	5.25	9.56	6.85	4.02	9.41	21.01	6.64	5.75	19.67	16.57	9.55	5.01
Merged-chr4-66792346-1	chr4	66792246	66792446	+	846.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35205.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.44	5.03	4.56	7.24	8.59	9.72	8.97	9.76	3.93	2.01	8.54	2.51
Merged-chr8-108847695-2	chr8	108847581	108847781	+	846.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89179.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	9.29	9.06	7.42	9.25	10.23	8.47	4.98	9.28	11.01	6.53	4.02	3.45
Merged-chr2-167754864-2	chr2	167754758	167754958	+	846.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63681.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.06	9.56	11.41	4.02	20.46	19.44	9.3	15.39	11.21	3.51	9.04	4.07
Merged-chr8-26964101-3	chr8	26963990	26964190	+	846.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-13246.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	8.08	11.57	6.85	6.44	8.59	21.64	2.33	7.15	23.6	18.08	12.56	2.51
Merged-chr15-53344410-3	chr15	53344266	53344466	+	846.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	1817.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.86	7.29	6.85	8.85	3.27	3.45	6.98	3.48	5.51	4.52	6.03	4.39
Merged-chr1-184733444-3	chr1	184733325	184733525	+	846.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-932.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	11.71	6.54	14.83	14.48	13.91	13.8	4.98	13.23	9.05	16.57	19.09	10.65
Merged-chr9-40616581-3	chr9	40616485	40616685	+	846.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69379.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.86	17.1	11.98	12.47	7.36	10.03	12.95	13.04	14.95	13.05	16.58	6.27
Merged-chr12-111914991-3	chr12	111914895	111915095	+	846.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6940.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	8.08	6.54	5.13	17.29	16.36	14.74	16.28	15.45	14.16	14.56	9.55	17.23
Merged-chr6-108464988-1	chr6	108464888	108465088	+	846.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-24755.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.04	0.5	9.7	8.45	4.09	8.78	8.3	12.03	5.11	7.03	4.02	5.33
Merged-chr9-47386314-3	chr9	47386219	47386419	+	846.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143851.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	20.19	18.86	27.95	20.11	6.14	11.92	9.3	8.92	9.44	9.04	9.04	5.33
Merged-chr7-75828133-2	chr7	75828034	75828234	+	846.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20204.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.06	10.56	4.56	3.62	13.09	5.64	6.64	11.8	14.55	9.04	10.05	9.71
Merged-chr11-74371875-1	chr11	74371775	74371975	+	846.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7204.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	1.21	2.52	3.42	3.62	9.0	15.99	5.98	9.81	4.13	16.07	3.52	5.64
Merged-chr7-102233066-3	chr7	102232957	102233157	+	846.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10029.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	16.96	11.32	6.28	2.41	11.05	20.7	6.64	4.29	18.49	20.59	14.07	4.7
Merged-chr3-78312907-3	chr3	78312817	78313017	+	846.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	831970.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	11.31	3.52	16.54	14.48	14.73	11.6	17.27	19.79	12.19	13.56	22.11	20.68
Merged-chr15-4042539-3	chr15	4042354	4042554	+	846.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024188, intron 3 of 16)	L2a|LINE|L2	-15048.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	4.85	8.55	9.13	4.83	4.5	1.88	7.64	14.72	10.62	6.03	5.53	5.64
Merged-chr10-20036893-5	chr10	20036754	20036954	+	846.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	102328.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.63	1.51	1.14	6.84	1.64	4.7	4.32	5.94	7.47	4.52	4.52	3.76
Merged-chr14-26765068-2	chr14	26764974	26765174	+	846.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-95228.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	3.63	2.01	17.11	4.83	10.64	18.5	12.95	8.8	10.82	26.61	22.61	13.16
Merged-chr9-120049591-3	chr9	120049498	120049698	+	846.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009987, exon 2 of 2)	3' UTR (NM_009987, exon 2 of 2)	18698.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	11.31	5.79	4.56	11.66	22.91	22.26	15.94	10.21	20.06	22.59	18.09	13.47
Merged-chr11-73019563-3	chr11	73019478	73019678	+	846.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152202)	promoter-TSS (NR_152202)	570.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	10.09	7.04	14.83	14.08	22.09	10.03	17.94	21.62	12.78	5.02	11.56	8.14
Merged-chr15-97939690-2	chr15	97939593	97939793	+	846.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24536.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	12.52	15.34	3.99	2.41	9.0	19.13	5.65	2.33	15.54	11.55	10.05	6.89
Merged-chr2-120464959-2	chr2	120464862	120465062	+	846.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040608, intron 1 of 4)	intron (NR_040608, intron 1 of 4)	1369.0	NM_007601	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	5.65	5.79	14.26	9.65	10.64	11.29	11.96	19.65	2.56	10.54	12.56	3.76
Merged-chr14-62342830-2	chr14	62342713	62342913	+	846.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026001, intron 1 of 10)	intron (NM_026001, intron 1 of 10)	10745.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	8.08	10.06	6.28	6.44	5.73	8.47	10.96	8.33	2.36	13.05	4.02	2.19
Merged-chr11-120057921-1	chr11	120057821	120058021	+	846.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-10776.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	8.48	4.53	1.71	8.04	0.41	2.51	0.0	0.0	10.23	17.57	17.59	13.16
Merged-chrX-155210565-3	chrX	155210479	155210679	+	846.39679	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5870.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	11.71	6.54	7.99	5.23	11.05	10.35	7.97	14.83	4.92	10.54	5.53	12.22
Merged-chr13-4650426-3	chr13	4650322	4650522	+	846.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41258.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.65	7.29	8.56	9.65	13.09	12.23	13.95	17.27	14.75	22.59	27.64	15.98
Merged-chr9-71213851-3	chr9	71213748	71213948	+	846.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110518, intron 2 of 3)	intron (NR_110518, intron 2 of 3)	1393.0	NR_110519	100041660.0	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	8.88	11.82	14.83	12.47	22.09	12.54	10.96	9.14	12.98	10.54	45.22	14.1
Merged-chr2-144459184-3	chr2	144459070	144459270	+	846.3428960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033459)	promoter-TSS (NR_033459)	-110.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	5.25	7.8	12.55	14.88	5.73	4.7	6.98	7.91	10.03	8.54	14.07	11.9
Merged-chr17-79175548-1	chr17	79175448	79175648	+	846.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	123642.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0.0	0.0	1.14	0.0	0.82	1.25	0.66	1.09	15.74	10.54	21.1	11.59
Merged-chr1-175691884-1	chr1	175691784	175691984	+	846.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	748.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	1.21	4.02	5.13	2.41	8.18	6.59	7.64	7.6	7.47	5.02	6.03	4.07
Merged-chr16-17393164-1	chr16	17393064	17393264	+	846.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-12836.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	7.27	4.02	0.57	4.02	0.82	8.15	7.64	8.47	3.34	4.02	4.02	2.19
Merged-chr11-31713809-1	chr11	31713709	31713909	+	846.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-41947.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	11.71	10.82	3.99	17.7	1.23	3.14	0.66	2.92	6.29	3.51	13.06	3.45
Merged-chr15-95801425-2	chr15	95801317	95801517	+	846.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	10574.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	1.21	0.0	0.0	0.0	13.5	28.85	11.96	31.6	18.1	11.05	17.59	9.4
Merged-chr9-41162600-3	chr9	41162493	41162693	+	846.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4531.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.88	6.79	7.42	8.85	9.82	21.95	7.64	8.75	34.22	19.08	31.66	9.08
Merged-chr2-118728514-3	chr2	118728426	118728626	+	846.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-88.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	10.5	18.86	10.84	13.67	15.14	21.32	13.29	15.36	12.0	15.57	20.1	12.84
Merged-chr3-79809368-3	chr3	79809268	79809468	+	846.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33294.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	16.96	16.6	5.7	10.46	16.36	12.86	7.64	9.42	25.57	27.11	17.59	10.65
Merged-chr4-43466620-3	chr4	43466524	43466724	+	846.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11998.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	8.48	8.05	11.41	17.7	16.36	14.42	28.23	25.79	15.34	15.57	16.08	17.23
Merged-chr3-60408927-4	chr3	60408791	60408991	+	846.30835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63939.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	10.9	6.04	16.54	13.27	6.55	4.08	7.97	7.43	14.36	11.05	12.56	12.84
Merged-chr5-65480618-3	chr5	65480495	65480695	+	846.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	ID_B1|SINE|B4	12240.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	9.69	8.3	6.28	12.07	13.09	20.07	6.98	14.86	12.0	23.6	14.07	10.34
Merged-chr9-83540489-3	chr9	83540334	83540534	+	846.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7904.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.86	2.01	2.85	7.24	11.45	6.59	9.97	12.22	9.44	9.04	6.53	11.9
Merged-chr19-37508194-3	chr19	37508073	37508273	+	846.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42245.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	10.9	12.32	14.26	22.12	4.91	10.03	9.3	10.21	13.18	15.57	20.1	6.89
Merged-chrX-7776509-1	chrX	7776409	7776609	+	846.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	12468.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	5.25	8.3	1.71	4.02	12.27	9.09	4.65	14.61	3.34	7.03	6.03	3.45
Merged-chr18-6501485-2	chr18	6501389	6501589	+	846.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 1 of 13)	B3|SINE|B2	-10632.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	15.34	13.58	9.13	6.44	11.45	17.56	5.65	4.77	8.26	16.07	16.58	6.89
Merged-chr14-68582143-3	chr14	68582043	68582243	+	846.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021475)	promoter-TSS (NM_021475)	-71.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	4.85	10.06	14.83	12.07	10.64	19.76	8.97	28.43	16.52	13.05	18.59	10.96
Merged-chr18-54983276-3	chr18	54983175	54983375	+	846.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	6905.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	14.13	10.31	4.56	12.87	18.0	12.23	7.97	14.55	22.62	12.55	15.58	15.35
Merged-chr1-167554181-1	chr1	167554081	167554281	+	846.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44181.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	1.62	0.0	3.42	1.21	9.0	8.15	20.26	12.73	4.33	3.01	5.02	5.64
Merged-chr9-48282664-1	chr9	48282564	48282764	+	846.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58234.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.0	1.01	0.0	0.0	0.0	1.25	0.0	0.0	12.39	12.05	18.59	12.22
Merged-chr15-78449345-3	chr15	78449250	78449450	+	846.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19284.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	18.17	11.32	6.85	4.42	9.0	14.11	10.63	7.82	18.49	6.03	13.57	8.14
Merged-chr17-24152384-3	chr17	24152300	24152500	+	846.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1478.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	24.23	19.87	14.26	7.64	3.27	5.64	3.99	9.56	47.21	37.66	49.75	25.69
Merged-chr10-63347345-3	chr10	63347265	63347465	+	846.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-8330.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	8.48	15.09	12.55	6.84	15.96	7.21	5.98	8.92	12.0	7.53	9.04	10.02
Merged-chr11-98673358-3	chr11	98673267	98673467	+	846.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021347, intron 9 of 11)	intron (NM_021347, intron 9 of 11)	9016.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	10.5	9.56	21.68	9.65	10.64	12.23	3.32	9.34	20.26	13.05	15.07	8.14
Merged-chr2-181188752-3	chr2	181188633	181188833	+	846.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151465)	TTS (NR_151465)	1486.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	12.52	7.55	9.13	13.67	2.45	11.92	6.98	10.6	10.82	10.04	18.59	11.9
Merged-chr9-90055475-4	chr9	90055300	90055500	+	846.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	1133.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	2.83	6.79	3.99	5.63	5.32	9.09	10.96	4.21	7.87	12.55	6.53	8.14
Merged-chr2-31298037-2	chr2	31297936	31298136	+	846.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	52113.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	2.02	1.76	2.85	6.03	13.5	12.86	3.32	7.51	20.46	14.56	16.08	11.28
Merged-chr10-83922241-3	chr10	83922141	83922341	+	846.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	178456.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	7.67	12.07	13.12	20.91	10.64	11.29	13.62	15.98	16.72	12.55	20.1	17.23
Merged-chr5-136246077-3	chr5	136245974	136246174	+	846.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1134.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	10.5	9.81	13.12	9.25	9.0	6.27	17.61	14.13	24.0	19.08	23.11	21.3
Merged-chr8-117482475-3	chr8	117482374	117482574	+	846.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-15801.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	14.13	9.31	12.55	22.52	17.18	15.37	6.31	13.91	24.78	17.57	22.11	10.65
Merged-chr12-69473121-3	chr12	69473016	69473216	+	846.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038060, intron 2 of 4)	RSINE1|SINE|B4	2434.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	17.36	5.79	11.41	13.67	16.77	8.78	13.62	28.07	16.13	10.04	18.59	14.1
Merged-chr1-131797437-1	chr1	131797337	131797537	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178079)	promoter-TSS (NM_178079)	39.0	NM_001357478	212933.0	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	4.04	4.02	0.0	3.22	6.14	16.93	12.62	11.78	3.54	2.01	4.52	4.07
Merged-chr10-68247360-1	chr10	68247260	68247460	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	31366.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.85	5.03	0.57	2.41	4.91	12.54	3.32	7.4	5.7	2.01	1.51	0.31
Merged-chr11-97718055-3	chr11	97718010	97718210	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	14676.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	8.08	9.06	5.13	2.41	6.95	5.64	7.97	3.45	7.47	8.54	3.01	4.07
Merged-chr13-40938584-1	chr13	40938484	40938684	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	20950.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	1.21	0.75	0.0	3.22	2.45	5.64	6.31	7.18	3.54	1.51	7.03	0.63
Merged-chr3-51339812-3	chr3	51339710	51339910	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	CpG	834.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	2.83	13.58	2.85	8.04	9.82	11.29	7.31	8.8	11.6	7.53	13.57	19.42
Merged-chr7-128059300-3	chr7	128059203	128059403	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3337.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	16.96	16.1	23.96	8.85	9.41	10.66	4.65	14.8	20.26	10.04	25.63	9.4
Merged-chr3-108382106-3	chr3	108382018	108382218	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	1623.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	11.31	15.34	11.41	2.82	13.91	8.47	8.3	8.07	24.98	13.05	16.08	9.08
Merged-chr5-106679848-2	chr5	106679761	106679961	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	16969.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	7.27	6.04	7.42	7.64	18.0	8.15	12.95	14.64	5.51	4.52	15.58	11.9
Merged-chr5-34370519-2	chr5	34370387	34370587	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243123, intron 1 of 20)	CpG	554.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	8.88	4.28	0.0	1.21	6.14	4.7	3.65	5.07	8.06	13.05	3.01	5.95
Merged-chr13-9642108-1	chr13	9642008	9642208	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 31 of 36)	intron (NM_001081426, intron 31 of 36)	121702.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.04	3.77	7.99	4.02	3.27	4.7	6.31	9.14	8.26	8.03	8.54	4.7
Merged-chr1-191070528-2	chr1	191070427	191070627	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7506.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	1.62	5.28	1.14	2.82	5.32	4.08	5.98	6.73	17.7	3.01	17.59	10.34
Merged-chrX-169994182-3	chrX	169994060	169994260	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15243.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	18.17	15.85	19.97	10.05	3.68	2.2	6.98	4.26	43.86	42.18	46.23	22.24
Merged-chr2-102682355-1	chr2	102682255	102682455	+	846.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	23666.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.65	7.29	13.12	4.83	9.41	1.25	0.66	2.16	12.39	9.04	18.09	10.34
Merged-chr10-127529011-1	chr10	127528911	127529111	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	5548.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.25	4.53	2.28	2.41	1.23	0.31	1.99	1.46	2.16	2.01	0.5	4.07
Merged-chr2-18996941-1	chr2	18996841	18997041	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	1180.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	6.86	6.04	0.0	2.82	3.27	2.82	5.31	4.32	4.92	4.02	3.52	3.13
Merged-chr3-144568948-2	chr3	144568867	144569067	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	1249.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	5.65	4.53	6.85	7.64	9.0	1.88	5.65	7.93	12.0	11.55	13.06	7.21
Merged-chr2-6359834-3	chr2	6359733	6359933	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	MER3|DNA|hAT-Charlie	7097.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.85	8.3	13.69	8.04	15.96	15.37	15.28	18.03	14.75	14.06	11.56	13.47
Merged-chr11-32671640-2	chr11	32671538	32671738	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	29083.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	6.46	5.79	15.4	6.03	9.82	5.02	3.99	11.52	11.41	8.54	14.07	7.52
Merged-chr11-72260084-2	chr11	72259968	72260168	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004148, intron 4 of 11)	intron (NM_001004148, intron 4 of 11)	6536.0	NM_001004148	237831.0	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	2.42	9.06	5.7	3.62	9.82	12.23	8.97	15.39	9.64	11.55	22.61	14.41
Merged-chr12-36215300-1	chr12	36215200	36215400	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	2918.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.04	7.55	2.28	9.25	5.32	1.88	5.65	8.41	4.33	6.03	9.04	7.83
Merged-chr9-31248034-3	chr9	31247922	31248122	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23379.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	10.9	6.79	10.84	9.25	18.0	14.74	14.95	11.1	13.18	16.57	15.07	7.83
Merged-chr19-36921857-1	chr19	36921757	36921957	+	846.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2258.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	2.42	4.78	2.28	2.82	4.5	2.2	0.66	4.57	13.37	9.54	12.56	5.64
Merged-chr1-135699596-2	chr1	135699496	135699696	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20467.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	10.09	25.4	5.13	3.22	17.18	26.03	9.3	12.9	8.85	10.04	18.09	9.08
Merged-chr10-20769677-2	chr10	20769587	20769787	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44609.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	6.46	8.05	1.14	3.22	5.73	6.27	1.99	9.22	24.39	7.03	7.03	10.02
Merged-chr14-57537820-1	chr14	57537720	57537920	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	12991.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	6.46	5.53	1.14	8.04	2.45	1.88	6.98	5.66	4.72	5.52	4.02	4.07
Merged-chr6-108531405-1	chr6	108531305	108531505	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	41662.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.63	6.54	1.71	10.46	3.68	3.45	4.98	5.64	4.52	3.51	6.03	3.76
Merged-chr6-91685617-1	chr6	91685517	91685717	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1550.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.46	8.3	2.85	3.22	9.41	9.72	2.66	8.21	8.85	5.02	9.04	2.19
Merged-chr12-91758395-1	chr12	91758295	91758495	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	28041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.86	2.26	5.7	0.8	4.91	2.82	9.97	6.64	5.11	2.01	1.0	6.89
Merged-chr11-69059206-2	chr11	69059118	69059318	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-557.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	28.27	39.99	10.27	5.63	22.5	55.82	9.63	2.78	37.37	83.85	39.19	15.35
Merged-chr18-84804619-2	chr18	84804506	84804706	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46732.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	10.09	4.28	13.12	12.47	3.68	1.88	10.96	8.78	2.16	3.51	5.02	2.51
Merged-chrX-155337901-1	chrX	155337801	155338001	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016764, intron 1 of 6)	intron (NM_016764, intron 1 of 6)	559.0	NM_016764	53381.0	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	4.04	5.03	10.27	3.22	3.68	5.96	10.3	7.37	1.77	3.01	3.52	3.13
Merged-chr1-92652695-3	chr1	92652583	92652783	+	845.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3842.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	12.92	7.29	9.13	12.07	9.41	16.31	16.94	26.92	10.23	19.08	15.07	20.68
Merged-chr19-34682742-2	chr19	34682672	34682872	+	845.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 2 of 6)	Lx7|LINE|L1	41883.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	12.11	8.05	11.41	19.31	7.36	11.92	7.64	19.65	3.93	3.01	9.55	5.64
Merged-chr2-146848142-2	chr2	146848062	146848262	+	845.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-7727.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	13.33	6.54	7.42	11.66	16.77	19.13	7.97	22.26	4.13	4.52	2.01	2.82
Merged-chr11-88993780-3	chr11	88993695	88993895	+	845.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5608.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	16.15	8.3	8.56	20.51	18.0	17.56	12.95	19.57	19.87	16.07	13.57	11.28
Merged-chr16-43381409-3	chr16	43381256	43381456	+	845.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	B1F1|SINE|Alu	38840.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	19.79	11.32	14.26	13.67	21.27	6.59	20.93	21.45	8.65	7.53	6.03	6.27
Merged-chr18-77795592-3	chr18	77795479	77795679	+	845.872986	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152167, intron 1 of 2)	intron (NR_152167, intron 1 of 2)	811.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	11.31	3.27	3.42	1.61	5.73	7.21	6.31	4.07	7.87	8.03	8.04	10.65
Merged-chr11-62575441-3	chr11	62575363	62575563	+	845.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	977.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	16.15	9.56	11.41	8.04	15.96	11.29	3.99	11.64	17.9	22.09	19.6	12.53
Merged-chr17-34286982-6	chr17	34286877	34287077	+	845.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	794.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.44	8.3	13.69	8.45	6.14	5.02	2.99	2.58	10.23	9.54	6.03	10.96
Merged-chr15-55557699-2	chr15	55557606	55557806	+	845.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026759)	promoter-TSS (NM_026759)	298.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	14.54	9.06	10.84	14.08	8.18	15.05	22.92	18.56	13.57	12.55	11.56	6.89
Merged-chr11-80302817-2	chr11	80302713	80302913	+	845.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139228, intron 2 of 8)	intron (NM_139228, intron 2 of 8)	1901.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	6.86	8.55	4.56	3.22	13.5	16.31	2.33	7.49	13.18	7.53	11.05	4.07
Merged-chr16-21691843-2	chr16	21691748	21691948	+	845.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2817.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.08	5.79	9.7	6.44	11.45	11.29	12.62	18.98	17.51	14.56	11.05	7.52
Merged-chr2-51981895-2	chr2	51981803	51982003	+	845.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8695.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	5.25	4.28	1.14	3.62	12.27	12.23	13.29	9.48	7.67	7.53	15.07	7.83
Merged-chr3-119933460-3	chr3	119933365	119933565	+	845.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-150077.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	8.48	5.28	9.7	6.84	16.77	18.5	10.3	11.69	20.06	17.07	19.09	8.14
Merged-chr11-46096923-3	chr11	46096817	46097017	+	845.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 4 of 22)	intron (NM_001291890, intron 4 of 22)	-5353.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	1.62	3.02	6.28	8.85	4.09	5.33	11.96	13.96	21.83	18.58	70.35	9.71
Merged-chr15-99474651-3	chr15	99474544	99474744	+	845.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029236)	promoter-TSS (NM_029236)	86.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	21.4	11.32	6.28	8.85	9.0	22.89	6.31	5.8	27.14	18.08	20.1	18.17
Merged-chr6-142748294-5	chr6	142748164	142748364	+	845.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M7|LINE|L1	-8422.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	1.62	1.51	4.56	4.42	2.86	3.14	11.96	7.88	9.05	9.04	11.56	7.52
Merged-chr2-156850684-3	chr2	156850579	156850779	+	845.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291124, intron 2 of 3)	intron (NM_001291124, intron 2 of 3)	10672.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	14.13	3.77	18.25	16.49	11.86	13.8	5.31	13.71	10.23	10.54	20.6	7.21
Merged-chr9-122257183-2	chr9	122257059	122257259	+	845.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133979, exon 9 of 13)	exon (NM_133979, exon 9 of 13)	16869.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	10.9	6.29	19.4	4.42	5.32	6.9	12.95	14.24	3.93	3.51	6.53	5.95
Merged-chr11-83687314-2	chr11	83687201	83687401	+	845.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16755.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.81	0.5	0.0	0.0	10.64	6.9	9.63	8.89	14.16	5.02	14.07	5.01
Merged-chr9-7603540-3	chr9	7603419	7603619	+	845.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24712.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	9.29	7.29	6.85	5.63	16.36	7.53	6.98	15.08	20.26	10.54	19.6	8.14
Merged-chr10-51595332-3	chr10	51595236	51595436	+	845.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4876.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	10.09	13.58	17.11	7.64	24.55	12.54	16.94	23.72	16.72	11.55	12.06	9.71
Merged-chr6-127582929-1	chr6	127582829	127583029	+	845.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4954.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	4.85	6.79	2.28	5.63	4.09	6.27	10.3	8.02	4.33	6.03	5.53	2.82
Merged-chr17-8920536-1	chr17	8920436	8920636	+	845.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 3 of 21)	intron (NM_001347321, intron 3 of 21)	-67797.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	6.86	5.53	9.13	3.22	8.18	8.15	10.96	14.89	0.98	2.51	0.5	2.19
Merged-chr4-117199673-1	chr4	117199573	117199773	+	845.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17049.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.81	4.28	1.14	1.61	10.23	12.54	8.64	8.21	0.0	1.0	1.0	0.0
Merged-chr6-88379047-3	chr6	88378934	88379134	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	67505.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	11.71	9.06	16.54	21.72	19.23	3.76	13.95	20.83	8.46	6.03	11.05	9.71
Merged-chr14-72689701-3	chr14	72689580	72689780	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	L1_Mur3|LINE|L1	20323.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	8.88	10.06	15.4	2.01	10.64	20.07	3.32	8.92	16.33	17.07	13.06	5.01
Merged-chr2-124620029-3	chr2	124619936	124620136	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	9740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	15.75	4.02	11.98	10.86	7.77	13.48	2.66	14.92	5.31	13.05	6.03	7.83
Merged-chr14-20798948-3	chr14	20798852	20799052	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4713.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	13.33	16.35	7.42	12.07	8.18	14.74	8.97	17.24	18.49	13.56	19.6	11.9
Merged-chr4-95049341-3	chr4	95049251	95049451	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2871.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	9.69	12.07	19.97	14.48	16.36	10.03	14.62	9.45	8.85	9.04	14.57	12.84
Merged-chr4-32531646-2	chr4	32531550	32531750	+	845.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40012.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	19.38	8.8	26.24	37.4	13.91	10.35	18.93	55.88	3.74	1.51	28.64	8.46
Merged-chr8-75031569-3	chr8	75031458	75031658	+	845.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2128.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	11.31	12.58	10.27	26.14	9.82	14.42	17.94	21.7	12.59	8.54	11.56	7.83
Merged-chr11-75530540-3	chr11	75530442	75530642	+	845.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1152.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	10.9	9.56	7.42	6.44	14.73	16.31	11.96	7.79	17.9	18.08	15.07	10.02
Merged-chr13-112439673-2	chr13	112439574	112439774	+	845.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24396.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	10.5	11.32	13.12	9.25	7.77	14.11	11.29	9.5	9.64	15.06	11.05	9.08
Merged-chrX-99066747-2	chrX	99066655	99066855	+	845.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_199018, exon 5 of 14)	exon (NM_199018, exon 5 of 14)	24174.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	2.42	4.78	23.96	10.46	9.82	7.53	16.94	22.07	3.34	5.52	9.55	4.39
Merged-chr8-122269575-3	chr8	122269474	122269674	+	845.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12567.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	13.33	12.32	1.71	2.41	15.14	9.09	10.3	5.05	10.82	16.07	12.56	5.95
Merged-chr3-154332097-3	chr3	154331983	154332183	+	845.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040387, intron 1 of 2)	intron (NR_040387, intron 1 of 2)	1262.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	22.21	13.83	24.53	13.27	13.91	9.41	4.65	19.12	10.23	13.05	17.59	5.33
Merged-chrX-12140194-3	chrX	12140110	12140310	+	845.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	20136.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	16.56	18.86	10.27	8.45	20.86	27.59	14.62	21.34	12.0	14.06	24.12	12.22
Merged-chr18-13031790-2	chr18	13031676	13031876	+	845.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24786.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	4.44	3.52	5.7	10.05	4.91	7.84	12.95	7.85	11.8	8.54	17.59	8.14
Merged-chr14-8114334-3	chr14	8114240	8114440	+	845.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16129.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	12.92	4.53	5.7	7.24	9.41	19.76	18.27	11.86	18.1	10.04	17.59	5.64
Merged-chr7-31177359-3	chr7	31177250	31177450	+	845.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14992.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	11.31	3.52	3.42	11.26	10.64	10.66	5.98	7.18	14.75	7.53	24.62	6.27
Merged-chr9-45412507-3	chr9	45412397	45412597	+	845.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6420.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	8.08	8.05	5.7	8.04	15.55	15.37	2.99	10.74	9.05	10.04	14.57	9.71
Merged-chr11-58301230-3	chr11	58301154	58301354	+	845.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5815.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	13.73	6.04	14.83	14.88	14.73	17.56	2.99	12.17	6.49	3.51	9.55	8.77
Merged-chr17-35725711-3	chr17	35725615	35725815	+	845.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21116.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	12.52	9.56	6.28	17.7	14.73	12.23	15.94	11.5	13.96	12.55	10.55	6.89
Merged-chr10-88352845-3	chr10	88352731	88352931	+	845.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	4244.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	14.54	6.04	29.09	18.1	12.68	25.71	12.95	17.44	31.08	12.05	24.12	8.46
Merged-chr1-64304269-3	chr1	64304227	64304427	+	845.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-182938.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.65	8.8	5.7	9.65	10.23	12.23	7.31	8.75	8.06	6.53	12.06	9.71
Merged-chr6-70881112-3	chr6	70881030	70881230	+	845.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	36615.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	17.77	8.05	21.68	15.28	8.59	16.93	3.32	17.69	25.77	16.57	21.61	10.65
Merged-chr15-34530231-3	chr15	34530139	34530339	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026340, exon 16 of 16)	exon (NM_026340, exon 16 of 16)	34928.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	22.61	10.06	16.54	15.69	29.86	33.55	38.53	43.26	9.24	8.54	25.63	4.07
Merged-chr2-127519053-1	chr2	127518953	127519153	+	845.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110989, intron 1 of 8)	intron (NR_110989, intron 1 of 8)	2339.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	2.83	2.77	3.42	1.61	1.64	5.02	3.32	3.42	15.14	9.04	15.07	15.98
Merged-chrX-7193443-1	chrX	7193343	7193543	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 3 of 13)	intron (NM_001243762, intron 3 of 13)	-4729.0	NM_016691	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	2.42	4.78	3.99	5.63	0.82	8.15	7.64	7.88	4.72	11.55	5.02	4.07
Merged-chr10-78388329-1	chr10	78388229	78388429	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20216.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	7.67	5.28	13.12	9.25	17.59	11.6	5.31	13.57	2.56	2.01	7.03	3.13
Merged-chr19-42152175-3	chr19	42152084	42152284	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183195)	TTS (NM_183195)	4795.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	11.31	12.83	2.28	10.86	10.64	10.35	7.31	12.9	13.96	12.55	15.07	12.84
Merged-chr9-35211808-2	chr9	35211682	35211882	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291449)	promoter-TSS (NM_001291449)	579.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	4.44	6.04	9.7	3.62	2.05	0.94	5.65	4.57	9.05	7.53	8.04	9.08
Merged-chr1-88705318-3	chr1	88705193	88705393	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3102.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	14.54	11.57	7.42	8.04	10.23	16.93	13.62	8.33	11.01	20.08	18.59	10.96
Merged-chr5-107923040-3	chr5	107922948	107923148	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	22520.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	12.11	9.31	12.55	10.05	17.59	10.66	6.98	13.6	17.51	10.54	21.1	8.77
Merged-chr1-172368975-2	chr1	172368902	172369102	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-7529.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	3.63	1.26	6.85	5.23	9.0	5.02	2.33	6.7	15.34	16.57	19.6	13.47
Merged-chr6-82863681-1	chr6	82863581	82863781	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18172.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	2.42	4.78	5.7	4.83	9.41	11.92	8.97	11.3	2.95	10.04	5.53	2.51
Merged-chr14-63111176-2	chr14	63111072	63111272	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11290.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.48	3.77	12.55	7.64	11.05	2.51	3.32	7.49	12.98	10.04	2.01	9.08
Merged-chr16-92028251-3	chr16	92028174	92028374	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30048.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	19.38	14.09	14.83	10.05	13.91	11.6	15.28	23.19	12.59	13.56	1.51	14.72
Merged-chr15-25972927-3	chr15	25972838	25973038	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001277318, exon 7 of 7)	3' UTR (NM_001277318, exon 7 of 7)	-11428.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	10.09	12.58	14.26	8.85	11.86	9.72	12.95	16.07	14.36	13.56	16.58	14.41
Merged-chr9-72089116-3	chr9	72089018	72089218	+	845.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 3 of 20)	L1MEc|LINE|L1	22083.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	20.19	7.55	19.4	18.1	10.64	14.11	13.95	9.62	12.78	7.53	13.06	8.77
Merged-chr2-6284883-3	chr2	6284768	6284968	+	845.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-37889.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	15.34	7.04	25.1	14.88	12.68	11.6	19.27	27.81	8.26	10.04	16.08	8.46
Merged-chr7-139400480-3	chr7	139400389	139400589	+	845.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-5.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	8.88	11.57	15.4	2.01	11.86	11.29	1.66	7.71	12.0	7.03	14.07	9.08
Merged-chr13-41079580-3	chr13	41079431	41079631	+	845.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 1 of 11)	CpG	175.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	3.63	7.55	5.7	4.83	20.46	10.03	11.29	6.34	10.62	15.06	10.05	13.16
Merged-chr15-79891646-3	chr15	79891548	79891748	+	845.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-760.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	11.31	12.83	15.97	14.48	22.5	15.68	6.98	9.81	16.72	10.04	10.05	10.34
Merged-chr5-32137277-3	chr5	32137190	32137390	+	845.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	818.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	12.11	7.8	15.97	6.44	12.27	10.98	5.98	5.1	22.23	25.11	27.13	16.92
Merged-chr10-17275416-3	chr10	17275315	17275515	+	845.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179633.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	10.09	7.04	14.26	23.33	20.05	11.92	13.95	34.88	12.19	12.55	16.58	15.04
Merged-chr2-5035204-2	chr2	5035096	5035296	+	845.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-22405.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	6.06	5.03	8.56	1.61	17.18	11.6	5.65	6.22	21.44	18.08	8.54	10.65
Merged-chr5-113398160-1	chr5	113398060	113398260	+	845.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40866.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	2.02	2.52	2.28	2.82	7.36	9.09	18.27	21.11	4.52	1.0	8.04	0.63
Merged-chr4-134624270-3	chr4	134624152	134624352	+	845.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-56401.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	14.54	7.04	17.68	20.51	18.82	7.21	17.61	23.41	13.18	12.55	19.09	10.65
Merged-chrX-23695272-2	chrX	23695192	23695392	+	845.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	2241.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	4.04	4.02	11.41	4.42	11.45	10.66	6.98	8.61	12.39	13.56	5.02	5.95
Merged-chr9-53010944-1	chr9	53010844	53011044	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	237168.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	5.53	13.12	6.03	6.95	8.15	12.62	9.39	3.74	4.02	18.09	5.33
Merged-chr12-108700134-1	chr12	108700034	108700234	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	2172.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	6.46	2.52	2.85	3.22	5.73	5.96	6.64	7.09	6.88	4.52	3.52	7.21
Merged-chr5-20228069-1	chr5	20227969	20228169	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 5 of 22)	intron (NM_001170746, intron 5 of 22)	320551.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.44	3.77	6.28	10.46	9.41	4.08	7.31	9.36	3.93	10.04	5.02	1.57
Merged-chr12-73610256-3	chr12	73610155	73610355	+	845.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	25459.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	16.15	8.55	25.67	14.48	21.27	12.23	22.59	31.37	8.26	6.03	10.55	6.58
Merged-chr8-25598939-3	chr8	25598829	25599029	+	845.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1442.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	16.15	18.36	14.83	3.22	11.05	14.42	6.64	14.05	19.28	9.04	13.06	7.52
Merged-chr2-90965015-1	chr2	90964915	90965115	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	24618.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	1.62	6.04	0.0	2.41	10.23	3.14	9.97	10.85	6.49	8.54	13.57	4.07
Merged-chrX-93911335-1	chrX	93911235	93911435	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57321.0	NR_028320	385493.0	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	8.48	5.03	9.13	6.84	2.45	10.03	9.97	7.85	4.92	4.52	7.03	3.76
Merged-chr15-59037800-3	chr15	59037715	59037915	+	845.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	44211.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.46	8.05	17.68	18.5	31.91	7.53	7.97	23.75	19.47	15.57	34.67	15.98
Merged-chr13-23911527-2	chr13	23911433	23911633	+	845.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177016, intron 1 of 11)	Lx8b|LINE|L1	3474.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	3.63	8.55	10.27	15.69	12.68	15.05	2.99	11.64	6.88	8.03	9.04	5.64
Merged-chr4-11580181-2	chr4	11580077	11580277	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256142, intron 1 of 1)	intron (NM_001256142, intron 1 of 1)	515.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	4.04	7.55	3.99	7.64	4.91	9.41	6.64	8.02	18.29	15.06	19.09	6.58
Merged-chr5-122770991-1	chr5	122770891	122771091	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	8419.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	4.85	2.77	7.99	8.85	6.55	9.41	9.97	7.09	6.49	4.02	4.02	4.39
Merged-chr4-95846573-1	chr4	95846473	95846673	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	120462.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.25	2.01	5.7	4.83	6.14	10.35	7.64	13.07	2.56	6.03	7.54	8.14
Merged-chr2-167314896-1	chr2	167314796	167314996	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	B4|SINE|B4	34282.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	2.83	3.52	2.85	2.41	4.91	13.17	9.3	14.41	5.7	4.52	6.03	5.33
Merged-chr13-73804680-3	chr13	73804584	73804784	+	845.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40987.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	13.33	8.8	7.99	14.48	15.55	18.19	9.3	15.34	12.98	13.56	2.51	9.4
Merged-chr4-155812971-3	chr4	155812866	155813066	+	845.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207678, intron 1 of 10)	CpG	477.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	14.13	6.54	5.13	6.44	11.45	12.54	5.31	6.34	15.14	12.55	16.58	9.71
Merged-chrX-77534008-2	chrX	77533899	77534099	+	845.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	22772.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	4.44	1.76	2.28	4.83	7.36	5.96	12.62	10.26	8.46	12.05	6.53	5.95
Merged-chr9-62374767-5	chr9	62374630	62374830	+	845.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009672, exon 5 of 7)	exon (NM_009672, exon 5 of 7)	33387.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	5.25	1.76	3.42	4.83	9.82	2.2	5.31	4.32	5.7	7.03	3.52	3.76
Merged-chr6-17837916-3	chr6	17837838	17838038	+	845.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	88768.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	7.67	10.06	21.68	11.66	13.09	20.38	13.62	20.27	9.83	14.56	12.56	6.27
Merged-chr3-146946100-3	chr3	146945994	146946194	+	845.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302957, intron 18 of 21)	intron (NM_001302957, intron 18 of 21)	93727.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	5.25	12.83	9.13	13.27	4.5	11.92	12.95	13.85	9.83	12.05	6.03	12.84
Merged-chr15-58214089-3	chr15	58214085	58214285	+	845.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	1.62	3.77	1.14	2.41	6.55	4.08	8.64	4.15	7.67	4.52	5.53	3.76
Merged-chr8-41245301-2	chr8	41245203	41245403	+	845.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 1 of 37)	RMER6B|LTR|ERVK	5544.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.46	5.53	1.14	7.64	9.41	11.29	9.97	17.75	12.39	11.05	14.07	15.98
Merged-chr4-8927720-2	chr4	8927619	8927819	+	845.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.42	2.26	5.13	0.8	8.18	2.82	5.65	8.3	14.55	11.05	23.62	12.84
Merged-chr2-122160858-3	chr2	122160760	122160960	+	845.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_080510, exon 1 of 7)	5' UTR (NM_080510, exon 1 of 7)	160.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	10.9	12.83	9.13	9.65	12.27	8.15	5.98	11.05	21.83	20.59	21.1	14.72
Merged-chr9-61056439-3	chr9	61056283	61056483	+	845.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39314.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	10.5	5.03	11.41	14.88	5.32	11.92	12.29	12.64	13.77	12.05	13.06	10.02
Merged-chr18-38372675-3	chr18	38372578	38372778	+	845.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33685.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	8.88	9.06	15.97	6.84	7.36	17.87	3.32	6.17	21.24	18.58	19.09	4.7
Merged-chr8-117415785-2	chr8	117415699	117415899	+	845.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 4 of 20)	MTD|LTR|ERVL-MaLR	-37224.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	4.04	3.02	3.42	6.84	1.23	3.45	11.96	16.65	8.65	10.54	12.56	10.96
Merged-chr2-101922491-2	chr2	101922389	101922589	+	845.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36227.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	12.11	9.31	17.11	17.7	9.82	10.98	7.31	14.1	1.57	0.0	2.01	1.88
Merged-chr16-64852702-2	chr16	64852584	64852784	+	845.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	683.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	7.67	14.84	9.13	9.65	11.86	11.29	16.28	13.79	16.33	10.04	20.6	8.14
Merged-chrX-157476348-3	chrX	157476262	157476462	+	845.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009214, intron 1 of 10)	L1MB7|LINE|L1	15006.0	NM_001359185	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	4.44	5.79	10.27	8.85	14.73	14.11	4.98	17.36	18.1	32.13	22.11	13.47
Merged-chr5-77373011-3	chr5	77372911	77373111	+	845.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	35034.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	20.59	12.07	10.27	12.47	16.77	47.04	20.93	24.2	13.96	9.04	11.56	10.96
Merged-chr18-61224463-3	chr18	61224375	61224575	+	845.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	3976.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	2.02	9.31	11.41	8.04	13.5	19.76	8.97	17.38	30.68	26.11	61.81	21.3
Merged-chr6-116468277-3	chr6	116468159	116468359	+	845.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7081.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	13.33	12.32	11.41	11.66	15.14	11.29	9.3	10.96	13.77	16.07	13.57	6.89
Merged-chr4-12245141-3	chr4	12245056	12245256	+	845.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73141.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	8.48	7.29	19.4	7.64	17.59	19.76	21.26	33.25	11.41	11.05	17.59	9.71
Merged-chr9-35535269-3	chr9	35535162	35535362	+	845.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	23208.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	15.34	15.34	9.13	10.46	7.36	10.66	8.3	14.92	14.55	17.07	19.6	8.46
Merged-chr9-90126481-3	chr9	90126380	90126580	+	845.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11660.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	17.36	6.54	7.42	14.08	15.96	7.84	15.28	9.7	18.1	25.61	21.61	9.4
Merged-chr4-131977451-2	chr4	131977341	131977541	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 9 of 20)	intron (NM_183428, intron 9 of 20)	55670.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.85	6.79	7.99	8.85	6.55	10.03	8.64	11.27	9.64	5.52	17.59	15.66
Merged-chr13-92335315-3	chr13	92335191	92335391	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-19492.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.42	4.02	14.26	7.64	23.32	24.15	32.22	45.56	18.49	6.53	14.07	13.47
Merged-chr1-105785256-1	chr1	105785156	105785356	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	4533.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	1.62	4.78	0.0	1.61	9.0	0.94	1.99	2.61	3.74	2.51	1.0	0.63
Merged-chr17-51239710-1	chr17	51239610	51239810	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38278.0	NR_037260	100526491.0		NR_037260	ENSMUSG00000105182	Mir669a-9	mmu-mir-669a-9	microRNA 4669a-9	ncRNA	0.81	2.26	6.85	8.45	2.45	4.7	6.31	8.47	3.74	6.53	14.07	2.82
Merged-chr17-8899376-1	chr17	8899276	8899476	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	49391.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.04	3.52	7.99	5.23	8.59	0.0	11.96	19.32	3.54	2.01	10.55	4.07
Merged-chr4-59575352-2	chr4	59575260	59575460	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6203.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	9.69	7.55	13.12	12.47	16.36	12.54	6.31	21.11	11.21	6.53	13.06	15.98
Merged-chr17-46644876-1	chr17	46644776	46644976	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357130, intron 1 of 15)	intron (NM_001357130, intron 1 of 15)	1204.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	5.65	2.77	5.7	2.41	8.18	6.9	2.33	7.85	9.64	2.51	4.52	2.82
Merged-chr14-77790965-1	chr14	77790865	77791065	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8003.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	6.86	2.01	5.13	8.45	7.36	6.9	12.95	11.24	3.74	1.0	0.0	1.57
Merged-chr8-82846251-2	chr8	82846150	82846350	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17106.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	14.54	9.06	14.26	20.11	10.64	7.53	4.32	10.91	7.08	2.01	6.53	6.27
Merged-chr13-95799048-1	chr13	95798948	95799148	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92874.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.62	0.0	0.0	0.4	5.32	5.02	8.97	5.55	9.83	9.54	3.52	4.07
Merged-chr3-90156214-1	chr3	90156114	90156314	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029937, intron 15 of 39)	intron (NM_029937, intron 15 of 39)	52082.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	6.46	4.78	3.42	6.44	5.73	10.03	1.66	8.72	3.93	2.01	5.02	7.83
Merged-chr12-4720092-1	chr12	4719992	4720192	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029107, intron 6 of 7)	BGLII_B|LTR|ERVK	18291.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.81	7.04	1.14	4.02	4.09	15.68	4.65	8.52	6.69	8.03	8.54	5.33
Merged-chr12-26426460-1	chr12	26426360	26426560	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11198.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	3.23	6.29	4.56	1.61	6.14	12.86	4.98	8.97	5.51	2.51	8.54	3.76
Merged-chr8-61909984-1	chr8	61909884	61910084	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7290.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.23	2.52	2.28	3.22	8.18	2.51	7.64	5.55	5.51	5.52	10.05	6.27
Merged-chr16-55809663-2	chr16	55809537	55809737	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12501.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.29	8.55	3.42	1.61	6.95	19.76	1.33	1.54	8.26	14.56	2.51	1.57
Merged-chr3-109246265-1	chr3	109246165	109246365	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94418.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.04	1.26	9.13	7.24	10.64	2.2	3.32	7.49	9.44	4.02	5.53	5.33
Merged-chr3-156561715-1	chr3	156561615	156561815	+	845.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040399)	promoter-TSS (NR_040399)	-28.0	NR_040399	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	3.23	2.77	4.56	3.22	2.45	3.45	0.66	8.1	11.01	5.02	11.56	11.28
Merged-chr4-148500394-2	chr4	148500315	148500515	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	47.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	12.52	7.8	8.56	21.72	10.23	13.17	16.94	21.7	3.54	5.52	3.52	1.25
Merged-chr5-16973584-3	chr5	16973549	16973749	+	844.992065	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	419748.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	11.31	10.31	17.11	21.32	19.64	4.39	7.31	8.47	23.6	22.59	14.07	7.21
Merged-chr1-165682186-3	chr1	165682071	165682271	+	844.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25923.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	27.86	10.06	8.56	3.22	13.09	21.01	7.31	7.65	19.08	11.55	22.61	5.64
Merged-chr7-126655903-3	chr7	126655787	126655987	+	844.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029339, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	6578.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	12.92	8.8	23.39	20.11	11.45	18.5	9.63	18.17	10.23	3.01	12.56	5.95
Merged-chr11-69684508-3	chr11	69684376	69684576	+	844.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023517, intron 3 of 5)	intron (NM_023517, intron 3 of 5)	1078.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	8.88	11.57	9.13	8.04	13.09	7.53	7.97	16.29	9.24	8.03	7.03	10.65
Merged-chr1-171661906-2	chr1	171661739	171661939	+	844.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8802.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	2.42	3.52	3.99	0.0	0.0	2.82	3.32	3.98	6.88	2.01	5.53	6.89
Merged-chr11-118173220-3	chr11	118173101	118173301	+	844.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	39541.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	14.13	3.27	14.26	8.45	25.36	19.76	14.95	12.9	20.85	11.55	17.08	9.4
Merged-chr10-9908145-3	chr10	9908041	9908241	+	844.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7101.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	9.69	7.8	16.54	11.66	19.64	15.05	18.6	26.66	19.08	13.05	17.59	2.51
Merged-chr4-136070159-3	chr4	136070062	136070262	+	844.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16791.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	19.79	16.6	9.13	7.24	6.55	9.09	6.64	8.05	24.59	22.59	23.62	18.8
Merged-chr4-88436860-2	chr4	88436767	88436967	+	844.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 2 of 6)	intron (NM_025760, intron 2 of 6)	2059.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	2.83	2.77	1.14	2.82	5.32	3.76	5.98	12.36	10.82	8.54	16.58	7.21
Merged-chr7-132569016-3	chr7	132568918	132569118	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016978, intron 2 of 9)	intron (NM_016978, intron 2 of 9)	7380.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	14.94	16.6	10.84	18.1	8.18	17.56	8.64	10.77	11.01	5.52	9.04	9.71
Merged-chr3-27268934-2	chr3	27268822	27269022	+	844.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-48155.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.4	1.26	0.0	0.0	11.45	17.87	7.64	9.11	10.62	10.04	12.56	9.71
Merged-chr8-95806829-3	chr8	95806735	95806935	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015574)	promoter-TSS (NR_015574)	5.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	10.09	6.29	5.7	7.24	9.82	7.84	14.62	12.36	12.78	22.09	12.56	17.23
Merged-chr2-93976721-3	chr2	93976593	93976793	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3341.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	19.38	13.58	5.7	12.87	18.0	9.41	11.29	19.71	9.83	6.03	13.57	9.08
Merged-chr2-103638147-1	chr2	103638047	103638247	+	844.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	71837.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.06	4.02	2.28	8.45	11.86	7.53	12.29	12.64	3.93	6.03	3.01	6.58
Merged-chr5-134258598-3	chr5	134258488	134258688	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359066, intron 15 of 32)	intron (NM_001359066, intron 15 of 32)	-28963.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	14.94	10.31	2.85	4.83	24.55	20.07	21.26	14.05	10.42	5.52	8.54	6.27
Merged-chr18-37934893-3	chr18	37934762	37934962	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	614.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	8.08	0.25	12.55	5.63	16.36	3.14	1.33	10.18	14.95	6.53	15.07	10.34
Merged-chr9-64740842-3	chr9	64740722	64740922	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3066.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	10.09	12.58	19.4	12.07	28.64	22.26	16.94	20.24	13.37	24.1	8.54	8.77
Merged-chr5-150168942-3	chr5	150168830	150169030	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91000.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	12.52	9.31	18.83	9.25	12.68	14.74	4.98	17.47	12.98	14.06	16.58	16.29
Merged-chr9-114794122-3	chr9	114793980	114794180	+	844.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12087.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.23	8.05	14.26	9.25	14.73	7.84	4.98	11.5	14.36	13.05	19.09	11.28
Merged-chr6-145247249-2	chr6	145247135	145247335	+	844.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2996.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	1.62	5.53	0.0	8.04	2.86	9.41	5.98	9.67	12.19	13.56	21.1	11.9
Merged-chr17-7877547-3	chr17	7877458	7877658	+	844.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48442.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	16.56	14.84	14.83	8.04	27.82	8.78	10.63	13.07	20.06	17.57	22.61	9.4
Merged-chr7-19178937-3	chr7	19178855	19179055	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	-2215.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	18.57	23.64	13.12	4.83	7.77	17.25	9.3	6.11	13.57	8.03	11.05	8.77
Merged-chr6-31353650-3	chr6	31353567	31353767	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45106.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	15.34	4.78	9.7	10.86	13.5	14.11	6.98	25.93	19.28	13.05	27.64	14.72
Merged-chr6-120454252-3	chr6	120454149	120454349	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8948.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	13.33	6.79	11.98	10.46	22.91	11.92	10.63	19.15	16.33	11.05	17.59	14.72
Merged-chr2-51150396-3	chr2	51150287	51150487	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-1276.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	21.0	16.35	7.42	7.24	12.68	17.56	6.31	13.82	16.13	20.59	16.58	11.59
Merged-chr19-40402425-1	chr19	40402325	40402525	+	844.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001034964)	promoter-TSS (NM_001034964)	-115.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.44	3.52	2.28	5.23	12.27	7.53	7.64	12.73	6.49	2.51	10.05	6.27
Merged-chr1-91428787-3	chr1	91428699	91428899	+	844.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 17 of 22)	intron (NM_011066, intron 17 of 22)	-14761.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	12.52	12.07	3.99	4.02	11.86	18.5	5.98	4.46	8.65	12.05	21.61	10.02
Merged-chr12-85659520-2	chr12	85659395	85659595	+	844.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27225.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.86	2.01	9.13	16.49	16.77	16.62	12.29	12.2	8.65	13.05	9.04	9.71
Merged-chr2-155696394-3	chr2	155696246	155696446	+	844.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3962.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	6.86	6.29	1.71	6.03	6.14	11.29	13.95	6.93	7.47	17.57	3.01	3.13
Merged-chr7-39545015-3	chr7	39544955	39545155	+	844.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27289.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	8.48	6.54	6.28	8.04	2.45	8.15	12.95	12.53	19.08	25.61	26.63	7.83
Merged-chr14-102867883-3	chr14	102867785	102867985	+	844.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114747.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	8.48	5.53	8.56	3.22	15.96	22.26	14.28	8.21	13.77	14.06	24.12	7.83
Merged-chr10-15297470-3	chr10	15297361	15297561	+	844.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-494316.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	11.31	8.55	11.98	13.67	14.32	11.6	10.3	29.16	15.34	13.56	27.64	8.46
Merged-chr15-8716606-3	chr15	8716512	8716712	+	844.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5805.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.23	13.08	9.13	7.64	8.18	6.59	6.31	5.89	11.01	13.56	15.58	4.07
Merged-chr2-71405800-1	chr2	71405700	71405900	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026115, intron 2 of 10)	B1F|SINE|Alu	-8676.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	9.0	5.96	5.65	8.05	7.67	7.03	12.06	5.01
Merged-chr10-96181595-3	chr10	96181495	96181695	+	844.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-44612.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.86	9.31	12.55	9.25	10.64	12.86	17.27	21.08	18.29	17.57	27.13	18.17
Merged-chr14-121279243-3	chr14	121279132	121279332	+	844.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134082, intron 24 of 26)	intron (NM_134082, intron 24 of 26)	30526.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	10.09	10.06	13.69	17.29	13.09	14.42	14.95	13.85	15.14	19.08	14.07	15.98
Merged-chr14-74983254-1	chr14	74983154	74983354	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	8168.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	19.38	7.55	7.42	4.02	7.77	14.74	8.3	12.64	8.26	9.54	6.03	4.39
Merged-chr4-97885727-1	chr4	97885627	97885827	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108101.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.04	1.01	2.28	2.41	6.14	5.64	5.98	11.94	2.36	1.0	4.02	3.13
Merged-chrUn_JH584304-23623-1	chrUn_JH584304	23523	23723	+	844.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36066.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.1	16.07	16.58	9.08
Merged-chr13-85441818-1	chr13	85441718	85441918	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-152332.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.42	2.77	2.28	5.23	8.59	7.21	6.64	8.72	0.79	2.01	0.0	3.13
Merged-chr9-41085348-1	chr9	41085248	41085448	+	844.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5842.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.21	7.04	3.42	0.0	5.32	16.62	3.99	4.49	17.11	17.57	14.57	1.88
Merged-chr8-127330402-2	chr8	127330303	127330503	+	844.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013580, intron 3 of 13)	intron (NM_001013580, intron 3 of 13)	30751.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	16.96	4.02	13.69	9.65	14.73	5.64	15.28	10.6	8.06	5.52	9.55	9.71
Merged-chr11-120988539-3	chr11	120988437	120988637	+	844.6611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	2796.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	14.54	12.32	13.12	16.49	17.59	9.41	6.64	12.56	10.82	19.58	12.06	15.98
Merged-chr18-62985871-2	chr18	62985752	62985952	+	844.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028017, intron 5 of 11)	MER102c|DNA|hAT-Charlie	7936.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	4.04	6.29	3.42	3.22	8.18	6.27	3.32	9.7	18.49	5.02	11.05	15.98
Merged-chr14-73384596-4	chr14	73384527	73384727	+	844.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	662.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	8.08	8.05	1.71	10.46	5.73	3.76	2.99	6.22	17.9	15.57	9.55	10.02
Merged-chr13-85556276-2	chr13	85556178	85556378	+	844.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-266792.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	13.73	10.31	7.99	14.48	5.73	12.23	7.97	9.93	8.26	8.54	10.05	6.89
Merged-chr2-113431067-3	chr2	113430985	113431185	+	844.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-9979.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	10.09	10.31	2.28	14.08	9.82	10.35	5.31	13.68	21.24	16.57	29.14	11.28
Merged-chr19-29494606-3	chr19	29494512	29494712	+	844.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	27375.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	14.54	6.54	5.7	8.45	10.64	20.07	13.95	14.5	17.31	23.1	21.1	14.72
Merged-chr13-35081297-3	chr13	35081198	35081398	+	844.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	86506.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	14.94	15.09	17.11	11.66	27.0	18.81	10.63	9.42	16.13	8.54	12.06	4.7
Merged-chr9-41154204-3	chr9	41154099	41154299	+	844.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	3863.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.88	6.54	14.83	3.62	12.27	17.87	13.62	9.9	22.03	11.55	16.58	8.77
Merged-chr3-145650763-3	chr3	145650662	145650862	+	844.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-777.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	6.06	6.79	5.7	12.07	20.05	14.74	13.29	17.07	12.19	16.07	23.62	13.78
Merged-chr2-124599195-3	chr2	124599084	124599284	+	844.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-11112.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	13.73	5.28	13.12	14.48	9.82	13.48	7.97	13.18	17.51	11.55	33.16	4.7
Merged-chr12-102517853-3	chr12	102517763	102517963	+	844.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37078.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	21.0	12.58	12.55	4.02	17.59	9.41	4.32	16.23	12.98	9.04	8.54	12.84
Merged-chr1-35971601-3	chr1	35971504	35971704	+	844.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-96796.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.06	7.04	14.26	14.48	19.23	6.27	19.27	26.64	14.55	11.05	23.11	15.98
Merged-chr15-64266808-3	chr15	64266698	64266898	+	844.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	45875.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	9.29	9.06	4.56	19.71	18.41	10.66	9.3	16.15	20.26	12.55	22.11	10.02
Merged-chr10-115312417-3	chr10	115312324	115312524	+	844.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	3167.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	10.09	19.12	15.4	14.08	12.27	16.31	7.31	20.55	16.72	24.1	12.56	15.66
Merged-chr3-87358869-2	chr3	87358784	87358984	+	844.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 1 of 5)	B4|SINE|B4	1003.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.06	6.54	2.28	3.22	3.27	10.35	5.31	4.32	8.26	17.57	27.64	12.84
Merged-chr4-103359245-2	chr4	103359147	103359347	+	844.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 8 of 8)	B1F2|SINE|Alu	-23253.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	9.29	5.53	7.42	15.28	15.96	4.08	12.62	15.34	5.7	9.54	6.03	5.64
Merged-chr3-126746637-2	chr3	126746549	126746749	+	844.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 4 of 18)	intron (NM_001025438, intron 4 of 18)	149698.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.04	7.29	10.27	6.03	7.36	23.2	11.63	2.72	16.33	9.04	12.56	5.33
Merged-chr6-121343340-3	chr6	121343300	121343500	+	844.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347433, intron 1 of 14)	intron (NM_001347433, intron 1 of 14)	324.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	6.86	9.31	11.41	5.63	2.05	6.9	4.98	6.31	10.23	7.53	12.56	5.33
Merged-chr15-67176180-4	chr15	67176113	67176313	+	844.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	669.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.04	12.32	3.99	4.02	11.86	9.72	4.98	7.71	14.75	14.06	9.04	12.22
Merged-chr9-20998492-3	chr9	20998364	20998564	+	844.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	6.46	8.8	11.98	9.25	10.64	9.09	15.94	4.79	10.03	11.05	11.56	9.4
Merged-chr14-41021010-2	chr14	41020920	41021120	+	844.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7187.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	5.65	5.28	9.7	5.23	3.68	6.27	3.32	7.63	16.52	15.57	25.63	16.6
Merged-chr2-34807051-2	chr2	34806942	34807142	+	844.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164769, exon 7 of 7)	3' UTR (NM_001164769, exon 7 of 7)	-7130.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	10.9	12.83	7.42	11.66	8.18	4.39	8.3	8.92	6.49	9.54	8.04	6.27
Merged-chr3-9818165-3	chr3	9818076	9818276	+	844.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	15503.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	12.92	11.82	13.69	4.02	8.59	10.98	6.31	12.08	19.08	13.05	27.13	8.77
Merged-chr1-13332786-3	chr1	13332688	13332888	+	844.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	L1M4|LINE|L1	39641.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	12.11	20.63	14.83	13.67	16.77	9.41	5.31	20.55	15.14	10.54	19.09	6.58
Merged-chr16-30722519-2	chr16	30722429	30722629	+	844.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122806.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.42	5.03	5.13	7.64	12.27	8.15	12.29	20.33	9.64	12.55	16.08	3.76
Merged-chr8-106151901-4	chr8	106151718	106151918	+	844.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	1464.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.67	8.05	7.42	10.86	4.5	10.35	18.6	14.66	18.49	14.06	7.03	10.65
Merged-chr2-30773014-4	chr2	30772867	30773067	+	844.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28770.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	13.33	6.04	9.13	9.25	4.91	10.66	7.31	9.0	8.85	13.05	9.55	7.52
Merged-chr16-33886777-2	chr16	33886666	33886866	+	844.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	57101.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.44	3.02	7.99	6.44	5.73	11.92	9.3	18.93	12.19	6.03	10.55	4.7
Merged-chr9-120051720-2	chr9	120051605	120051805	+	844.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009987, exon 2 of 2)	exon (NM_009987, exon 2 of 2)	16591.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	8.48	7.29	18.25	10.46	23.32	20.07	25.58	18.87	7.28	0.5	4.52	3.76
Merged-chr5-122303542-3	chr5	122303430	122303630	+	844.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19132.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	27.05	8.55	18.83	6.44	4.91	15.05	11.96	14.05	8.46	4.02	13.57	11.59
Merged-chr8-82917101-1	chr8	82917001	82917201	+	844.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	53745.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.42	0.75	0.0	0.0	12.27	8.78	4.65	12.81	1.38	2.01	0.5	0.94
Merged-chr12-41315135-3	chr12	41315024	41315224	+	844.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170933.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.85	7.8	10.27	8.45	15.55	17.56	29.23	18.98	23.41	13.56	13.57	5.33
Merged-chr6-58907156-1	chr6	58907056	58907256	+	844.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021432)	promoter-TSS (NM_021432)	-30.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.81	0.5	5.7	3.22	8.18	3.76	7.97	9.95	1.97	5.52	11.56	3.76
Merged-chr13-38296801-1	chr13	38296701	38296901	+	844.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48915.0	NM_007556	12161.0	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.81	5.03	1.71	7.64	2.45	6.9	2.66	2.69	13.77	11.05	15.07	7.83
Merged-chr19-6018303-3	chr19	6018218	6018418	+	844.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045783, exon 5 of 5)	non-coding (NR_045783, exon 5 of 5)	-2493.0	NM_001110504	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	17.36	8.05	17.11	11.66	12.27	22.58	2.66	8.94	18.29	20.08	16.58	5.95
Merged-chr17-56251290-3	chr17	56251174	56251374	+	844.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5519.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	14.94	6.54	5.7	9.65	11.45	12.54	4.32	7.71	17.7	8.54	20.1	7.83
Merged-chr6-67170460-3	chr6	67170364	67170564	+	844.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96515.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	2.02	7.04	9.7	10.86	13.5	15.68	13.29	14.02	13.18	15.57	10.05	7.83
Merged-chr11-22617712-3	chr11	22617545	22617745	+	844.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105362.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.63	9.06	9.7	4.42	10.64	6.9	13.62	12.36	9.83	8.03	17.08	8.77
Merged-chr13-33068263-2	chr13	33068166	33068366	+	844.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15837.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	8.08	8.05	15.4	3.62	8.18	3.45	10.96	10.01	5.11	5.52	7.54	5.64
Merged-chr13-37893219-1	chr13	37893119	37893319	+	844.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 3 of 9)	intron (NM_001039188, intron 3 of 9)	4348.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.46	2.52	6.28	4.83	8.59	4.39	7.64	11.5	9.83	3.01	8.54	7.21
Merged-chr8-94093094-1	chr8	94092994	94093194	+	844.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5717.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	5.65	5.53	1.71	3.22	11.45	5.96	7.64	17.47	5.11	8.54	9.04	4.39
Merged-chr6-33484790-2	chr6	33484677	33484877	+	844.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	235649.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	5.65	5.03	7.42	4.42	10.64	16.93	7.64	12.93	15.74	9.04	16.08	8.14
Merged-chr4-121014736-3	chr4	121014640	121014840	+	844.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	2507.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	14.94	9.31	11.98	8.85	12.68	5.96	2.66	13.26	21.64	10.04	13.06	5.95
Merged-chr10-119239248-6	chr10	119239213	119239413	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027994, intron 1 of 14)	CpG	742.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	14.54	19.12	4.56	12.07	9.82	9.09	18.27	10.79	19.08	26.11	20.1	10.34
Merged-chrX-162759574-3	chrX	162759431	162759631	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009031)	promoter-TSS (NM_009031)	-841.0	NM_009031	245688.0	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7, chromatin remodeling factor	protein-coding	4.85	11.57	12.55	3.62	12.68	17.56	10.3	7.71	19.67	9.04	11.05	3.45
Merged-chr3-95141654-3	chr3	95141539	95141739	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	721.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	6.86	3.52	10.84	14.48	17.18	10.98	9.63	13.6	6.1	7.03	12.56	11.59
Merged-chr2-102878216-3	chr2	102878109	102878309	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23456.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.09	7.29	11.41	5.63	13.09	14.42	14.62	16.09	12.0	5.52	10.55	10.02
Merged-chr16-57530749-3	chr16	57530660	57530860	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-18482.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	9.69	8.55	6.28	16.89	14.32	13.48	14.95	25.32	15.93	15.06	14.07	15.35
Merged-chr17-11657094-1	chr17	11656994	11657194	+	844.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	226095.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	14.13	12.83	19.4	8.45	0.82	0.63	1.33	1.21	3.54	3.01	6.03	4.7
Merged-chr10-44635385-3	chr10	44635279	44635479	+	844.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176631.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	10.5	5.03	23.96	18.5	15.96	10.35	12.29	12.42	10.42	14.56	14.57	9.71
Merged-chr7-28432571-2	chr7	28432470	28432670	+	844.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	3621.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	1.62	5.03	6.85	2.82	15.14	10.35	5.31	9.87	15.93	10.04	14.57	8.77
Merged-chr12-8889453-3	chr12	8889360	8889560	+	844.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31847.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	7.27	6.79	7.99	13.67	11.86	10.98	6.98	12.64	17.31	12.55	24.12	8.14
Merged-chr1-157518392-3	chr1	157518288	157518488	+	844.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-6665.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	22.61	12.58	13.69	18.9	2.86	6.9	4.32	7.85	15.54	13.56	29.14	11.28
Merged-chr10-118857255-2	chr10	118857141	118857341	+	844.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11662.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.88	14.34	8.56	7.64	12.68	28.22	12.95	15.9	4.33	4.52	11.05	2.19
Merged-chr14-55762673-2	chr14	55762513	55762713	+	844.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020490, exon 2 of 2)	exon (NM_020490, exon 2 of 2)	1185.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	8.88	9.56	9.13	8.04	15.55	5.64	10.3	2.38	10.42	9.04	14.57	9.71
Merged-chr7-19006661-3	chr7	19006550	19006750	+	844.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178757, exon 1 of 1)	3' UTR (NM_178757, exon 1 of 1)	2585.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	12.92	8.8	13.12	8.04	19.64	9.72	6.98	7.6	12.59	14.06	16.58	11.28
Merged-chr4-24568204-3	chr4	24568104	24568304	+	844.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	71753.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	10.9	14.09	7.99	11.66	21.68	19.13	19.93	28.43	10.03	14.06	12.06	14.41
Merged-chr4-141281577-3	chr4	141281397	141281597	+	844.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3058.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	4.44	6.54	2.85	5.63	6.14	8.47	6.98	9.0	3.74	14.06	11.56	6.89
Merged-chr5-72812851-3	chr5	72812750	72812950	+	844.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55598.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	17.36	9.56	15.97	13.67	22.09	15.37	12.62	20.36	13.96	12.55	21.1	9.4
Merged-chr4-156033653-3	chr4	156033643	156033843	+	844.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7421.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	4.44	11.07	5.13	8.04	4.91	5.02	6.98	3.56	10.62	9.04	11.56	13.16
Merged-chr13-117198535-2	chr13	117198448	117198648	+	844.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-22025.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.23	5.03	0.57	5.23	6.95	8.78	12.29	10.77	15.54	17.07	19.09	5.33
Merged-chr2-160237556-2	chr2	160237462	160237662	+	844.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89932.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	14.13	9.31	18.25	9.65	8.59	2.2	8.64	14.07	7.67	6.03	9.04	12.53
Merged-chr9-21011189-3	chr9	21011072	21011272	+	844.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-4768.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	11.31	14.09	14.83	8.85	16.77	12.23	3.32	4.12	18.49	20.08	25.12	10.96
Merged-chr19-44385333-3	chr19	44385239	44385439	+	844.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	22370.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	8.88	10.06	4.56	10.46	16.77	20.38	5.31	7.91	18.69	16.57	16.08	5.64
Merged-chr4-129069086-2	chr4	129068980	129069180	+	844.0499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10809.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	3.63	6.54	11.41	4.02	21.27	16.31	3.99	5.75	20.06	25.11	18.59	7.21
Merged-chr1-64190980-2	chr1	64190883	64191083	+	844.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69594.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.48	3.02	7.42	3.22	9.0	11.6	6.64	12.95	8.85	14.06	17.59	12.22
Merged-chr11-102437763-3	chr11	102437654	102437854	+	844.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008175)	TTS (NM_008175)	7432.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	10.9	7.29	13.69	7.24	18.0	11.6	8.3	11.05	19.28	19.08	18.09	11.59
Merged-chr8-76902915-1	chr8	76902815	76903015	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083906, intron 1 of 8)	intron (NM_001083906, intron 1 of 8)	407.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	2.83	0.75	2.85	4.83	4.09	7.53	1.99	7.46	2.75	2.01	5.53	1.57
Merged-chr9-61119392-1	chr9	61119292	61119492	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14006.0	NR_105026	66785.0	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	6.46	5.53	2.85	6.44	6.95	3.45	6.98	7.74	7.87	15.06	3.52	4.7
Merged-chr1-157077223-2	chr1	157077121	157077321	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31429.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	8.88	6.04	3.42	3.62	17.18	16.31	7.97	7.04	12.0	9.54	4.52	8.14
Merged-chr1-170277284-1	chr1	170277184	170277384	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012009)	promoter-TSS (NM_012009)	-34.0	NM_012009	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0.81	0.75	2.28	4.02	6.55	7.21	10.96	7.07	6.69	3.01	1.51	0.63
Merged-chr19-56770808-3	chr19	56770701	56770901	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42882.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	10.9	9.31	10.27	12.87	15.55	13.48	11.63	16.15	7.28	13.56	19.09	5.01
Merged-chr1-180607629-1	chr1	180607529	180607729	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	20428.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	8.08	2.01	1.14	4.02	6.14	9.41	4.65	7.21	5.51	1.0	6.53	3.13
Merged-chr1-131018641-3	chr1	131018510	131018710	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1235.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	12.11	7.04	19.4	6.84	10.64	7.53	4.98	2.41	10.82	7.53	14.07	5.95
Merged-chr3-127496758-1	chr3	127496658	127496858	+	844.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	2357.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.0	0.0	0.8	0.0	0.0	0.66	0.36	10.82	7.53	13.06	4.7
Merged-chr8-57468765-1	chr8	57468665	57468865	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009136, intron 1 of 2)	B4A|SINE|B4	12842.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	4.04	4.53	27.95	6.84	7.36	10.03	7.31	18.48	5.9	1.0	0.5	1.57
Merged-chr18-70620299-3	chr18	70620202	70620402	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	52010.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.44	9.81	8.56	20.91	7.36	8.78	5.31	7.21	20.46	9.04	23.62	12.84
Merged-chr6-32158413-1	chr6	32158313	32158513	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 29 of 31)	intron (NM_175750, intron 29 of 31)	108125.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	1.21	2.01	6.85	2.82	3.68	2.51	6.64	8.07	3.34	3.01	3.01	2.82
Merged-chr1-36068776-1	chr1	36068676	36068876	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_015818, exon 1 of 2)	exon (NM_015818, exon 1 of 2)	376.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	8.08	14.09	2.28	12.07	8.59	7.21	9.97	5.83	12.39	9.04	6.03	4.39
Merged-chr17-64789822-1	chr17	64789722	64789922	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22711.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.81	3.02	2.28	2.01	2.05	3.45	1.99	4.37	0.98	0.5	1.0	2.51
Merged-chr19-32361460-1	chr19	32361360	32361560	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	ORR1E-int|LTR|ERVL-MaLR	-12144.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.04	1.01	4.56	6.44	10.23	6.27	3.99	7.04	5.7	2.01	11.56	4.39
Merged-chr10-53421703-1	chr10	53421603	53421803	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152767, intron 2 of 2)	intron (NR_152767, intron 2 of 2)	11821.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	1.01	4.56	2.01	0.0	0.0	6.31	4.79	1.57	4.02	3.52	3.76
Merged-chr14-26487174-2	chr14	26487080	26487280	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	47444.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	6.06	8.8	5.7	12.47	10.64	10.98	3.65	9.03	14.16	12.05	6.03	6.89
Merged-chr12-111912514-3	chr12	111912412	111912612	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4457.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	15.75	12.58	12.55	3.62	15.14	16.31	11.96	17.07	21.83	10.54	21.1	9.08
Merged-chr3-107031744-1	chr3	107031644	107031844	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4418.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	5.25	5.53	2.85	4.83	7.36	4.39	4.65	7.23	5.11	4.52	7.03	3.76
Merged-chr10-34283318-1	chr10	34283218	34283418	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009433, exon 1 of 1)	exon (NM_009433, exon 1 of 1)	1128.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.63	4.53	2.28	13.67	1.23	6.27	2.33	1.57	6.29	6.03	11.56	8.46
Merged-chrX-142270951-1	chrX	142270851	142271051	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26554.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	3.63	2.26	3.99	4.42	6.14	2.2	5.65	7.57	5.9	8.54	6.53	7.21
Merged-chr6-39244272-1	chr6	39244172	39244372	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37499.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	2.42	3.52	2.28	8.85	4.09	9.72	6.64	10.23	2.36	2.01	2.01	0.31
Merged-chr17-45559281-1	chr17	45559181	45559381	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001304956, exon 3 of 6)	exon (NM_001304956, exon 3 of 6)	3581.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	10.5	9.31	6.85	1.61	1.64	6.9	1.33	2.05	5.7	6.53	2.01	3.45
Merged-chrX-20355500-2	chrX	20355403	20355603	+	843.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8978.0	NM_133669	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	7.67	14.34	14.83	11.26	9.41	8.15	11.29	14.47	17.31	8.03	6.03	4.07
Merged-chr5-41707153-3	chr5	41707039	41707239	+	843.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132325, intron 1 of 5)	intron (NR_132325, intron 1 of 5)	552.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	13.33	7.55	10.27	21.72	16.77	11.92	9.97	12.31	26.55	22.09	13.57	15.35
Merged-chr6-71444949-3	chr6	71444848	71445048	+	843.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4311.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	10.9	8.05	3.99	2.82	11.86	23.2	7.97	14.75	16.52	7.53	16.58	12.53
Merged-chr11-76900210-2	chr11	76900092	76900292	+	843.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4353.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	5.65	4.02	8.56	12.07	12.68	14.11	14.28	15.08	12.78	9.04	10.55	12.84
Merged-chr7-28601931-2	chr7	28601830	28602030	+	843.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3746.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	9.29	9.81	5.7	10.46	18.41	21.01	7.97	8.41	12.78	7.53	9.55	5.01
Merged-chr7-90481051-2	chr7	90480945	90481145	+	843.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-5050.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	6.86	7.55	11.41	16.89	11.86	11.6	7.31	8.66	0.0	1.0	0.5	2.82
Merged-chr7-30698306-2	chr7	30698208	30698408	+	843.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026961)	promoter-TSS (NM_026961)	-618.0	NM_026961	69147.0	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	17.36	10.82	7.42	10.46	13.5	15.68	5.98	10.96	6.29	12.05	7.03	6.89
Merged-chr9-21135172-3	chr9	21135053	21135253	+	843.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3878.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	13.33	7.29	7.42	4.83	6.95	18.5	10.63	5.19	22.03	9.54	19.6	10.02
Merged-chr5-117505371-3	chr5	117505270	117505470	+	843.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	91368.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	10.5	12.07	10.27	7.24	8.59	23.52	6.31	9.31	19.47	35.65	28.14	20.36
Merged-chr18-5807292-2	chr18	5807183	5807383	+	843.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	214636.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.06	4.78	10.27	4.02	11.45	20.38	11.96	11.64	12.19	18.58	12.06	2.51
Merged-chr8-115486988-2	chr8	115486879	115487079	+	843.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57E1|LTR|ERV1	219915.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	9.29	6.29	5.7	0.8	1.23	14.74	10.3	6.08	8.46	15.57	9.55	7.52
Merged-chr1-86218104-3	chr1	86218014	86218214	+	843.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	MIRb|SINE|MIR	63334.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	7.27	6.04	3.42	8.04	1.64	0.63	3.99	9.08	2.75	0.0	0.0	2.82
Merged-chr10-39321710-2	chr10	39321550	39321750	+	843.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48149.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	2.83	0.5	3.42	10.46	6.14	1.57	7.64	13.01	5.11	2.51	13.57	5.95
Merged-chr5-142424934-1	chr5	142424834	142425034	+	843.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	23437.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	4.44	5.79	1.71	1.61	8.59	12.54	9.63	5.75	2.36	6.53	2.51	1.57
Merged-chr4-95924928-3	chr4	95924828	95925028	+	843.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42107.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	10.09	13.08	12.55	18.5	6.95	7.84	8.64	11.05	16.33	8.03	13.57	9.4
Merged-chr11-87763780-1	chr11	87763680	87763880	+	843.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172449, intron 4 of 31)	intron (NM_172449, intron 4 of 31)	3239.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	2.83	7.04	3.99	3.22	4.5	9.72	1.66	3.06	2.36	7.03	1.51	5.01
Merged-chr14-117778721-3	chr14	117778642	117778842	+	843.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	175105.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	8.48	7.29	10.27	8.45	7.36	10.66	16.61	17.02	19.67	6.53	19.6	4.7
Merged-chr3-97957725-1	chr3	97957625	97957825	+	843.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	RSINE1|SINE|B4	27552.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	6.06	8.05	3.99	2.41	6.55	10.03	11.29	10.15	5.9	6.53	13.57	6.58
Merged-chr2-124616182-4	chr2	124615957	124616157	+	843.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	5761.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.85	2.26	7.42	6.03	1.23	3.76	6.31	5.3	6.69	5.52	14.07	4.39
Merged-chr10-122882807-3	chr10	122882694	122882894	+	843.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	102930.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	11.71	13.83	8.56	18.9	21.68	25.71	13.62	31.63	15.74	13.05	11.56	6.58
Merged-chr12-51848126-3	chr12	51848019	51848219	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18583.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	18.57	7.29	12.55	16.49	34.77	36.37	17.27	29.07	12.98	7.53	10.55	6.27
Merged-chr6-113441382-3	chr6	113441336	113441536	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1081.0	NM_001205025	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	5.25	8.3	2.28	8.85	10.64	9.41	5.65	11.86	13.37	2.01	5.02	10.34
Merged-chr7-118494625-3	chr7	118494519	118494719	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2644.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	10.5	21.63	23.39	28.96	14.73	12.86	20.59	21.9	12.98	6.03	8.54	7.52
Merged-chr11-121808430-3	chr11	121808327	121808527	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21791.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	11.31	6.79	6.85	8.45	5.73	13.48	6.31	8.89	17.51	15.57	18.09	11.9
Merged-chr1-191138544-3	chr1	191138420	191138620	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26297.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	16.15	21.13	32.52	19.31	11.45	10.03	14.62	25.37	7.67	6.03	12.06	9.08
Merged-chrX-75764525-1	chrX	75764425	75764625	+	843.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_029443, intron 1 of 8)	intron (NR_029443, intron 1 of 8)	174.0	NR_029443	74396.0	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik|Dxz4	RIKEN cDNA 4933407K13 gene	ncRNA	4.04	6.04	2.28	4.02	8.18	6.27	15.28	10.32	3.54	6.03	9.55	9.71
Merged-chr7-122261776-2	chr7	122261676	122261876	+	843.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27349.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	11.71	4.02	13.12	12.47	26.59	7.53	12.62	9.34	7.28	10.04	10.05	7.83
Merged-chr5-23132447-1	chr5	23132347	23132547	+	843.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	RLTR11B|LTR|ERVK	301906.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.23	3.27	5.13	6.03	17.59	12.54	4.98	12.31	3.93	16.07	12.06	5.33
Merged-chr2-59925390-3	chr2	59925250	59925450	+	843.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 20 of 35)	intron (NM_001001182, intron 20 of 35)	-42744.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.04	5.03	21.11	24.94	13.5	8.47	12.62	20.55	9.44	10.54	16.58	8.77
Merged-chr14-51098501-2	chr14	51098401	51098601	+	843.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201239, intron 1 of 1)	intron (NM_201239, intron 1 of 1)	2501.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	14.54	5.28	5.7	5.63	2.05	5.96	2.99	5.52	19.47	16.57	10.55	4.39
Merged-chr19-53128666-3	chr19	53128556	53128756	+	843.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11787.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	14.54	7.29	26.24	18.1	12.27	14.74	16.61	27.25	8.26	7.03	27.13	9.4
Merged-chr10-60388551-3	chr10	60388463	60388663	+	843.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-11163.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	8.88	7.29	4.56	13.67	13.09	20.38	11.63	24.39	12.98	4.52	14.07	9.71
Merged-chr12-25339860-3	chr12	25339747	25339947	+	843.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210673.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.88	17.36	34.23	12.87	15.14	15.68	15.61	16.15	20.46	8.03	11.56	12.22
Merged-chr16-57423597-3	chr16	57423493	57423693	+	843.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	70316.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	12.11	8.8	11.41	8.45	18.0	14.42	5.65	17.24	18.49	19.58	27.64	8.14
Merged-chr13-114457342-3	chr13	114457250	114457450	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301375, intron 1 of 5)	CpG	1601.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	8.08	7.04	6.28	6.44	2.86	3.14	7.31	11.52	11.41	2.01	8.04	8.14
Merged-chr10-118797422-1	chr10	118797322	118797522	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71481.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.46	7.55	7.99	8.04	11.05	9.72	9.3	5.89	9.83	8.54	6.03	2.19
Merged-chr10-122575628-1	chr10	122575528	122575728	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5737.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.85	3.02	4.56	2.82	9.41	2.82	5.98	8.66	5.51	3.51	3.52	4.07
Merged-chr16-34700384-3	chr16	34700285	34700485	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172824, intron 5 of 12)	intron (NM_172824, intron 5 of 12)	9769.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	10.5	11.32	10.84	11.26	9.41	11.92	8.64	12.81	8.46	7.53	17.59	10.96
Merged-chr3-52030251-1	chr3	52030151	52030351	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	74755.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.02	4.02	2.85	2.82	6.55	9.09	14.95	8.8	3.15	7.03	11.05	7.21
Merged-chr9-9238523-1	chr9	9238423	9238623	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	490.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	4.04	5.03	3.42	2.41	3.68	7.53	9.3	9.56	8.85	9.54	6.53	4.7
Merged-chr7-101836841-3	chr7	101836785	101836985	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122739, exon 2 of 29)	5' UTR (NM_001122739, exon 2 of 29)	939.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	8.88	13.33	5.7	0.8	4.5	4.7	6.64	4.09	7.47	14.06	10.05	4.39
Merged-chr18-80984257-1	chr18	80984157	80984357	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178280, intron 1 of 3)	intron (NM_178280, intron 1 of 3)	2321.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	1.21	2.52	1.14	4.42	4.91	8.15	9.63	11.66	3.15	7.53	2.01	4.39
Merged-chr4-4791344-1	chr4	4791244	4791444	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177730, intron 1 of 4)	intron (NM_177730, intron 1 of 4)	1962.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	6.06	5.28	4.56	4.83	10.23	3.14	9.63	7.46	9.83	7.53	5.53	8.14
Merged-chr13-38503732-1	chr13	38503632	38503832	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289599, intron 8 of 9)	intron (NM_001289599, intron 8 of 9)	24182.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	1.62	2.52	3.42	5.63	9.82	8.15	3.32	13.91	2.16	2.01	6.03	3.45
Merged-chr5-53929651-3	chr5	53929553	53929753	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68870.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	6.46	9.06	9.7	14.08	20.46	10.66	13.95	20.58	17.31	20.59	21.1	8.77
Merged-chr10-94337764-1	chr10	94337664	94337864	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	polypurine|Low_complexity|Low_complexity	25815.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.25	3.77	13.69	8.04	10.64	9.72	7.97	7.46	5.31	7.53	11.05	6.27
Merged-chr1-80716194-3	chr1	80716099	80716299	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42354.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	16.15	4.78	6.85	9.25	19.64	14.11	19.27	22.01	21.05	19.58	8.54	8.46
Merged-chr2-131423764-1	chr2	131423664	131423864	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-68098.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.04	4.53	1.14	5.63	18.41	8.78	3.32	7.77	7.47	9.04	5.02	2.19
Merged-chr12-55459939-3	chr12	55459836	55460036	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32711.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	9.69	7.29	6.85	16.09	21.27	4.7	9.97	14.55	20.46	15.06	23.11	8.77
Merged-chr1-195040629-2	chr1	195040538	195040738	+	843.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_132621)	TTS (NR_132621)	3091.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	13.33	2.77	6.85	8.85	8.18	12.86	2.99	7.91	14.95	6.03	18.09	14.41
Merged-chr11-34771847-2	chr11	34771739	34771939	+	843.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12066.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	8.48	8.55	15.97	7.64	15.55	10.03	1.99	9.76	8.46	10.04	14.07	10.96
Merged-chr8-105339149-3	chr8	105339045	105339245	+	843.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	8825.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	16.96	8.8	15.97	16.89	17.18	10.03	12.62	17.69	14.16	11.55	13.57	7.52
Merged-chr2-167804480-3	chr2	167804267	167804467	+	843.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113190.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.25	3.77	6.85	7.64	7.77	6.9	4.65	3.53	3.74	3.51	6.03	7.52
Merged-chr14-66295953-3	chr14	66295843	66296043	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038077, intron 2 of 2)	MTD|LTR|ERVL-MaLR	-1082.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	12.92	20.63	13.12	5.23	9.0	15.68	9.97	4.46	17.51	20.08	13.57	9.4
Merged-chr4-116144513-3	chr4	116144436	116144636	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026547)	promoter-TSS (NM_026547)	80.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	5.65	14.09	14.26	9.65	11.05	22.26	19.93	16.32	20.26	13.56	22.11	4.7
Merged-chr9-57820629-3	chr9	57820538	57820738	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	13596.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	14.13	8.3	13.69	9.65	8.59	13.8	13.62	10.43	11.21	10.54	5.02	10.02
Merged-chr6-8420209-3	chr6	8420085	8420285	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	CT-rich|Low_complexity|Low_complexity	88976.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	7.27	4.02	9.13	19.71	10.23	21.01	39.53	45.0	14.55	15.06	14.07	19.11
Merged-chr9-104285079-3	chr9	104284984	104285184	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22154.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	14.54	9.31	9.7	7.24	7.77	9.41	10.63	11.58	14.55	17.57	16.58	6.89
Merged-chr13-110384734-3	chr13	110384589	110384789	+	843.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-10355.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	16.96	7.55	11.41	20.91	19.64	11.29	5.98	12.64	16.92	11.05	20.1	12.53
Merged-chr10-77605500-3	chr10	77605395	77605595	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	-602.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	10.09	10.06	1.71	3.62	2.45	19.13	4.65	10.79	19.28	17.07	25.63	11.28
Merged-chr4-45455414-2	chr4	45455314	45455514	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-46648.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	10.09	8.8	7.99	12.47	11.05	12.23	9.97	17.69	7.67	5.52	10.05	2.82
Merged-chr2-181365925-2	chr2	181365798	181365998	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	475.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	5.65	8.3	6.85	14.08	12.68	10.03	8.97	5.97	8.06	4.02	10.55	9.71
Merged-chr14-19916074-1	chr14	19915974	19916174	+	843.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	60619.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	4.44	4.02	3.99	4.42	2.05	6.27	3.99	10.07	4.52	2.01	14.07	5.64
Merged-chr18-25904870-1	chr18	25904770	25904970	+	843.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-150713.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	7.27	3.52	5.7	5.23	3.27	3.45	5.65	13.74	4.13	2.01	2.51	4.07
Merged-chr18-54937929-1	chr18	54937829	54938029	+	843.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	52251.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.62	0.5	6.85	3.22	19.23	10.03	8.97	13.68	5.51	2.51	4.52	4.07
Merged-chr11-117332371-3	chr11	117332261	117332461	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	48.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	16.15	13.08	6.28	7.64	14.73	13.48	5.31	7.63	9.44	4.52	10.05	7.21
Merged-chr18-11351863-2	chr18	11351751	11351951	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-281425.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	10.09	8.3	2.28	2.41	19.64	29.16	27.9	22.18	8.06	10.04	2.51	1.57
Merged-chr6-117875039-3	chr6	117874882	117875082	+	843.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12101.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	6.86	6.54	1.14	10.46	3.27	16.31	9.3	16.12	8.26	10.04	13.06	8.14
Merged-chr2-128124141-3	chr2	128124023	128124223	+	843.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028765)	TTS (NM_028765)	-1915.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	10.9	9.81	7.99	5.23	10.23	18.19	5.98	9.42	12.78	7.53	7.03	10.34
Merged-chr10-80017614-3	chr10	80017521	80017721	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347074, intron 1 of 22)	intron (NM_001347074, intron 1 of 22)	706.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	15.34	3.02	3.99	11.26	18.0	10.98	11.63	13.6	15.54	12.05	8.54	12.53
Merged-chr8-57596121-3	chr8	57596028	57596228	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-55625.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	14.94	6.79	10.84	4.02	8.18	14.11	12.95	17.66	19.08	6.03	11.56	13.47
Merged-chr9-108694253-3	chr9	108694135	108694335	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	2092.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	11.71	11.82	31.95	30.16	15.96	12.86	14.95	14.05	14.55	6.53	16.58	8.46
Merged-chr3-51422216-3	chr3	51422120	51422320	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	6204.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	23.02	12.58	13.12	10.46	14.32	16.62	18.27	14.92	9.83	9.04	15.07	11.28
Merged-chr1-59483908-3	chr1	59483833	59484033	+	843.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1786.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.85	3.02	9.7	14.08	13.5	8.15	4.98	11.66	19.47	17.07	26.63	14.1
Merged-chr8-115571905-3	chr8	115571793	115571993	+	843.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	135001.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	12.92	9.31	20.54	8.85	20.46	8.47	5.98	17.52	18.88	14.56	14.07	5.01
Merged-chr11-115613396-3	chr11	115613306	115613506	+	843.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	-437.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	14.54	2.77	11.98	6.84	11.86	10.98	10.96	8.69	10.82	8.54	11.05	8.77
Merged-chr8-45439367-3	chr8	45439308	45439508	+	843.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28789.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	11.71	14.09	7.99	12.87	17.18	17.87	7.97	15.34	22.62	16.07	10.05	13.78
Merged-chr17-46154516-2	chr17	46154420	46154620	+	843.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-969.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	2.42	4.53	20.54	4.83	8.18	8.15	3.65	6.93	8.26	9.04	18.59	10.96
Merged-chr7-69985931-2	chr7	69985836	69986036	+	843.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	351886.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.81	0.75	0.0	0.8	13.91	4.7	8.97	12.64	12.78	12.55	13.06	7.52
Merged-chr14-103392562-2	chr14	103392462	103392662	+	843.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45762.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.23	6.79	6.85	3.22	9.82	6.27	4.32	8.66	10.82	6.03	13.06	2.19
Merged-chr2-132586071-1	chr2	132585971	132586171	+	843.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7823.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	3.23	3.52	10.27	8.04	4.09	8.15	7.31	13.91	4.72	2.01	7.54	4.39
Merged-chr6-51178601-3	chr6	51178437	51178637	+	843.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	91373.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	3.63	6.04	13.12	4.42	4.91	11.29	3.99	5.07	41.3	56.74	41.2	15.98
Merged-chr16-17558179-1	chr16	17558079	17558279	+	843.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029053, exon 4 of 9)	exon (NM_029053, exon 4 of 9)	3068.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	4.85	6.54	7.42	10.46	11.05	6.9	5.31	11.36	14.75	5.52	4.52	5.01
Merged-chr8-106959760-3	chr8	106959664	106959864	+	843.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	MTC|LTR|ERVL-MaLR	24014.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	7.67	7.55	11.98	14.48	18.82	23.2	8.3	9.42	22.42	23.1	27.13	12.53
Merged-chr10-95682516-3	chr10	95682391	95682591	+	843.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118345.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.67	11.32	9.13	14.08	11.05	16.62	3.65	14.19	10.03	13.05	12.56	4.39
Merged-chr18-80371372-1	chr18	80371272	80371472	+	843.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7118.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	1.62	3.77	10.84	5.63	6.14	6.59	4.98	10.04	6.1	8.03	16.08	5.01
Merged-chr6-103525822-3	chr6	103525716	103525916	+	843.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	14940.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	7.27	10.06	27.95	27.75	10.64	9.09	6.64	8.3	11.21	3.51	17.59	6.58
Merged-chr10-126979603-5	chr10	126979534	126979734	+	843.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	CpG	917.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	5.65	16.1	16.54	9.25	10.64	6.27	12.62	6.03	7.47	13.05	14.57	15.66
Merged-chr3-51511069-3	chr3	51510960	51511160	+	843.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27094.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	6.46	9.31	10.27	2.82	18.41	11.6	9.63	11.75	21.83	13.05	23.11	6.89
Merged-chr13-81785887-1	chr13	81785787	81785987	+	843.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	2640.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.65	4.53	10.84	7.64	6.55	2.51	7.31	12.22	9.24	7.53	6.53	5.01
Merged-chr1-135514312-2	chr1	135514210	135514410	+	843.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-59627.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	31.5	30.43	28.52	6.44	10.64	26.34	5.31	7.37	17.7	4.52	7.03	3.13
Merged-chr5-135611090-2	chr5	135610995	135611195	+	843.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21559.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	3.63	3.77	5.7	7.24	9.82	7.21	1.99	8.41	12.19	4.02	11.56	5.64
Merged-chr11-108252120-3	chr11	108252007	108252207	+	843.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	91781.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	9.69	10.06	13.12	12.47	8.59	13.48	10.96	9.28	16.72	19.58	9.04	7.52
Merged-chr7-113193216-3	chr7	113193114	113193314	+	843.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14251.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	10.9	12.58	17.68	14.48	11.45	16.93	24.25	27.36	11.21	14.06	26.13	10.02
Merged-chr13-37333595-3	chr13	37333493	37333693	+	843.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11752.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	10.5	11.57	19.97	16.89	11.45	11.92	9.3	12.64	12.19	14.56	24.12	11.28
Merged-chr2-61139112-3	chr2	61139020	61139220	+	843.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163969.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	18.98	13.83	13.69	19.31	35.18	26.97	13.95	32.8	8.46	7.53	19.09	7.83
Merged-chr3-108923282-3	chr3	108923187	108923387	+	843.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-11558.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	16.56	13.33	9.13	8.04	7.36	15.99	6.31	4.63	20.06	22.09	18.59	12.84
Merged-chr9-90105676-3	chr9	90105596	90105796	+	843.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	9124.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	12.92	7.29	9.13	15.69	10.23	19.13	10.96	13.15	18.1	10.54	16.08	10.65
Merged-chr1-88698459-3	chr1	88698292	88698492	+	843.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	3799.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	9.69	12.58	12.55	3.62	11.86	15.05	3.99	11.44	9.05	8.03	11.05	5.33
Merged-chr10-16637200-3	chr10	16637106	16637306	+	843.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	458576.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	12.52	12.32	11.98	5.63	13.5	9.09	7.64	14.78	23.21	16.07	26.63	15.98
Merged-chr7-97809533-3	chr7	97809431	97809631	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	MIRb|SINE|MIR	20990.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	8.88	11.82	14.83	17.7	9.82	5.64	7.97	13.49	20.85	9.04	21.61	29.76
Merged-chr1-74201221-3	chr1	74201127	74201327	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	5393.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	9.29	7.29	4.56	6.84	9.0	15.05	11.63	24.25	16.52	19.58	31.66	14.41
Merged-chr1-192939198-3	chr1	192939101	192939301	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301370, intron 4 of 8)	GA-rich|Low_complexity|Low_complexity	-83449.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	9.69	8.8	19.4	16.89	3.27	10.03	4.65	8.02	18.69	14.56	13.57	10.34
Merged-chr16-11411916-3	chr16	11411815	11412015	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290148, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6267.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	16.15	7.29	14.83	17.29	9.0	12.54	4.65	17.78	18.69	15.57	18.09	5.33
Merged-chr9-45261617-4	chr9	45261484	45261684	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136903, intron 4 of 5)	intron (NR_136903, intron 4 of 5)	5123.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	10.9	10.06	2.28	7.24	4.5	16.31	11.96	9.67	12.78	9.04	7.54	6.89
Merged-chr12-79050943-2	chr12	79050792	79050992	+	843.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181073, intron 4 of 28)	intron (NM_181073, intron 4 of 28)	21729.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	6.06	9.31	6.28	2.41	5.32	5.96	6.31	9.2	9.64	10.04	9.55	2.82
Merged-chr4-126204852-3	chr4	126204761	126204961	+	843.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2151.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	8.88	9.81	17.11	18.1	5.73	10.35	7.31	13.43	21.83	16.07	26.13	15.04
Merged-chr10-95679018-3	chr10	95678922	95679122	+	843.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-114876.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	9.69	4.02	15.97	18.5	22.91	7.84	17.61	13.63	14.95	14.06	15.07	12.84
Merged-chr14-122223851-3	chr14	122223759	122223959	+	843.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9779.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	9.69	11.32	7.99	14.48	14.32	15.37	21.92	14.27	10.62	19.08	24.12	9.08
Merged-chr4-141538103-3	chr4	141537961	141538161	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	CpG	536.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	10.09	5.03	6.85	4.42	9.82	13.48	11.29	8.94	16.13	9.04	7.54	9.08
Merged-chr11-114885979-3	chr11	114885882	114886082	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4059.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.44	5.53	9.13	5.63	11.45	13.8	3.32	9.7	12.98	10.54	15.07	8.46
Merged-chr2-43673799-3	chr2	43673700	43673900	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-75024.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	12.11	10.82	4.56	14.48	13.91	21.01	6.31	11.5	26.95	17.07	34.67	9.4
Merged-chrX-155191921-3	chrX	155191813	155192013	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24536.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	8.48	9.56	11.41	6.84	13.5	24.15	14.62	17.13	13.96	16.07	19.6	10.34
Merged-chr5-139398546-3	chr5	139398456	139398656	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7831.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	11.71	15.85	15.97	18.1	9.41	20.07	3.99	9.0	20.26	17.07	16.08	10.34
Merged-chr17-36967013-2	chr17	36966900	36967100	+	843.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8408.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.0	6.29	12.55	6.44	5.32	11.92	9.3	7.49	5.9	2.01	18.09	9.4
Merged-chr11-50211741-3	chr11	50211631	50211831	+	843.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	-911.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	8.08	4.53	10.27	13.67	11.05	13.8	3.99	10.91	14.55	15.06	15.07	13.47
Merged-chr5-144963576-3	chr5	144963490	144963690	+	843.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	2240.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	16.15	25.4	7.42	10.05	21.27	26.03	4.32	7.74	17.51	31.13	15.07	10.34
Merged-chr6-86584499-3	chr6	86584443	86584643	+	843.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43631.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	8.48	13.08	5.13	3.22	11.86	15.99	9.97	8.61	13.96	24.6	17.08	5.95
Merged-chr16-22545218-3	chr16	22545147	22545347	+	843.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13063.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	13.73	10.06	18.25	8.04	6.95	5.02	3.32	10.26	7.28	6.03	9.55	10.34
Merged-chr10-8953158-2	chr10	8953059	8953259	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67089.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.04	0.5	11.41	10.46	0.82	4.7	5.65	10.04	10.03	5.02	9.04	4.07
Merged-chr13-93013161-2	chr13	93013062	93013262	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60142.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	8.48	5.53	17.11	7.64	1.23	3.76	7.64	9.34	12.0	10.54	8.54	9.71
Merged-chr14-63079518-1	chr14	63079418	63079618	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24445.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	6.06	3.77	11.41	5.23	9.0	11.29	11.96	5.21	16.33	11.05	7.03	8.77
Merged-chr15-97520641-1	chr15	97520541	97520741	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	185181.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	2.02	1.26	11.98	4.02	4.5	8.47	12.29	19.49	7.28	7.03	5.53	6.89
Merged-chr10-51481039-2	chr10	51480954	51481154	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291893, intron 2 of 7)	intron (NM_001291893, intron 2 of 7)	442.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	12.52	11.32	7.42	4.42	20.05	47.04	5.98	12.03	21.83	14.56	12.06	8.46
Merged-chr4-44704569-1	chr4	44704469	44704669	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_073462, exon 1 of 1)	non-coding (NR_073462, exon 1 of 1)	1769.0	NR_073462	70602.0	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	4.85	6.29	3.42	9.25	4.5	8.78	3.32	8.02	4.33	1.51	6.53	1.57
Merged-chr18-83740663-1	chr18	83740563	83740763	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	345899.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.25	3.02	12.55	6.44	4.91	6.27	27.24	17.97	4.13	6.53	7.03	5.64
Merged-chr12-104273731-1	chr12	104273631	104273831	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10609.0	NM_001199940	628900.0	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	0.0	0.5	1.14	2.41	8.18	4.08	8.3	6.36	0.2	3.01	1.0	0.0
Merged-chr6-135163509-1	chr6	135163409	135163609	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	4706.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	6.06	2.77	4.56	4.02	3.68	0.94	6.98	7.15	1.38	6.03	3.52	4.39
Merged-chr9-47435471-1	chr9	47435371	47435571	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94699.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.04	1.76	3.42	3.62	8.59	5.33	4.65	6.11	0.98	0.0	2.51	2.82
Merged-chr2-72962330-1	chr2	72962230	72962430	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001018042, intron 4 of 6)	intron (NM_001018042, intron 4 of 6)	16951.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.06	4.78	7.42	8.45	11.86	5.96	8.3	15.5	6.1	16.07	10.55	2.82
Merged-chr15-100679150-2	chr15	100679051	100679251	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	8769.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	16.96	14.09	3.42	8.04	9.82	9.41	5.31	4.09	11.6	9.54	14.57	5.01
Merged-chr1-106163475-1	chr1	106163375	106163575	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8049.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	1.62	0.0	1.14	0.0	4.5	0.63	6.31	6.87	3.74	1.0	1.0	4.7
Merged-chr9-112180176-1	chr9	112180076	112180276	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001177615, exon 5 of 5)	3' UTR (NM_001177615, exon 5 of 5)	5773.0	NM_001177618	74100.0	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	5.65	5.53	6.85	10.46	11.45	6.59	14.95	17.27	4.52	2.01	3.01	7.21
Merged-chr11-49204575-1	chr11	49204475	49204675	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	1075.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	8.48	4.78	5.7	7.24	2.45	9.09	1.99	7.51	9.24	8.03	12.06	3.13
Merged-chr9-16307128-1	chr9	16307028	16307228	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	MTE2b|LTR|ERVL-MaLR	71103.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.4	1.01	3.42	0.4	1.23	5.96	7.31	11.3	3.15	6.03	4.52	0.0
Merged-chr2-44977768-2	chr2	44977668	44977868	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45409.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	15.75	10.82	6.28	3.22	10.64	12.23	8.64	3.45	5.11	3.51	2.01	6.27
Merged-chr18-12862462-1	chr18	12862362	12862562	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001252493, exon 1 of 15)	5' UTR (NM_001252493, exon 1 of 15)	251.0	NM_001252493	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	6.46	5.28	8.56	2.82	5.73	3.45	6.64	6.03	2.75	6.03	7.54	8.46
Merged-chr14-105164927-3	chr14	105164843	105165043	+	842.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134077, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	12384.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	9.29	7.04	22.82	23.73	25.36	9.72	17.61	30.28	17.11	10.54	25.12	11.9
Merged-chr19-29391456-3	chr19	29391350	29391550	+	842.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19469.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	5.65	7.55	18.83	4.02	13.09	15.37	9.3	9.67	24.0	17.57	19.6	6.27
Merged-chr15-81960330-3	chr15	81960247	81960447	+	842.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282041, intron 1 of 5)	CpG	583.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	8.88	17.61	17.11	3.22	9.82	13.8	3.99	11.47	15.74	12.55	10.05	14.1
Merged-chr13-94322640-3	chr13	94322527	94322727	+	842.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	36296.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	11.71	7.55	19.97	11.66	28.64	31.04	17.61	50.58	12.39	13.56	25.63	21.3
Merged-chr8-111550377-3	chr8	111550281	111550481	+	842.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	12038.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	11.71	7.29	6.85	14.08	20.46	5.64	13.62	18.42	12.59	8.03	12.56	5.33
Merged-chr3-144689444-2	chr3	144689344	144689544	+	842.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	30891.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	10.5	10.56	4.56	21.32	19.64	18.81	6.98	35.64	6.29	1.0	5.53	3.45
Merged-chr5-43818877-3	chr5	43818765	43818965	+	842.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009763)	promoter-TSS (NM_009763)	-28.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	5.25	5.79	13.69	14.48	18.41	12.86	14.95	20.41	10.23	21.59	16.08	15.04
Merged-chr8-124857218-2	chr8	124857106	124857306	+	842.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025615, intron 2 of 6)	MurERV4-int|LTR|ERVK	5823.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	14.13	10.82	14.26	8.04	14.73	19.44	11.29	19.91	0.0	0.0	0.0	0.0
Merged-chr2-159646122-2	chr2	159646028	159646228	+	842.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-301213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.44	9.06	5.7	4.83	15.14	6.59	4.65	11.69	13.96	7.03	15.07	6.89
Merged-chr13-9380941-3	chr13	9380841	9381041	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	104416.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	11.71	11.82	15.4	5.63	9.41	12.86	6.98	12.5	24.98	15.06	13.57	10.96
Merged-chr2-18798937-3	chr2	18798845	18799045	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131254)	TTS (NR_131254)	2873.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	11.31	3.52	4.56	10.46	11.05	13.17	4.32	18.67	23.01	23.6	24.12	10.34
Merged-chr9-102622622-3	chr9	102622431	102622631	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081122, intron 2 of 16)	intron (NM_001081122, intron 2 of 16)	3593.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	3.23	3.77	3.42	4.42	6.95	5.64	2.66	2.72	4.92	11.55	5.53	3.45
Merged-chr12-32640893-3	chr12	32640798	32640998	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179437.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	21.0	21.13	26.81	12.87	6.14	15.05	11.63	15.06	14.75	7.53	11.56	6.89
Merged-chr14-60284061-3	chr14	60283967	60284167	+	842.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	18862.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	11.71	11.32	9.7	6.44	4.91	9.41	8.3	8.89	16.72	16.57	16.58	5.95
Merged-chr2-144287350-3	chr2	144287251	144287451	+	842.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16447.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	12.52	12.07	13.12	7.24	15.14	18.19	9.3	17.89	22.03	11.05	24.12	6.89
Merged-chr5-4595192-2	chr5	4595099	4595299	+	842.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163017.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.5	2.28	6.03	19.23	7.53	21.92	24.34	6.49	4.02	13.06	7.83
Merged-chr16-49896347-2	chr16	49896252	49896452	+	842.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 6 of 9)	intron (NM_010581, intron 6 of 9)	40698.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	1.62	6.79	9.7	3.62	6.14	10.35	7.64	8.38	15.93	19.58	16.58	8.46
Merged-chr10-117221085-3	chr10	117220988	117221188	+	842.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	3419.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	14.54	16.1	10.27	14.48	12.27	19.76	5.65	9.84	10.23	15.57	7.03	8.14
Merged-chr4-53118904-2	chr4	53118802	53119002	+	842.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	MIR|SINE|MIR	40993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.23	3.27	2.28	6.44	4.5	8.15	28.9	15.59	11.6	7.53	14.07	4.7
Merged-chr8-120669038-3	chr8	120668897	120669097	+	842.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010926)	promoter-TSS (NM_010926)	677.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	12.92	6.79	11.98	5.23	6.14	7.21	3.32	8.5	10.62	5.52	18.59	8.14
Merged-chr18-75259285-3	chr18	75259187	75259387	+	842.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	38030.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	6.46	8.55	20.54	16.89	11.05	6.59	31.56	35.22	12.39	6.53	9.55	11.59
Merged-chr3-21961999-3	chr3	21961903	21962103	+	842.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114649.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	12.52	8.3	18.25	11.26	9.82	21.64	7.97	7.43	27.34	18.58	15.58	9.71
Merged-chr6-143168491-3	chr6	143168383	143168583	+	842.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	1253.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	10.9	9.31	10.84	8.45	15.55	5.96	10.96	13.21	24.59	10.04	13.57	7.21
Merged-chr6-28261013-3	chr6	28260930	28261130	+	842.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081678, intron 1 of 5)	CpG	571.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	8.08	10.56	13.69	12.87	10.64	11.29	13.95	7.54	12.78	5.02	18.59	8.14
Merged-chr9-32211569-3	chr9	32211467	32211667	+	842.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12682.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	10.9	9.81	21.68	8.45	18.41	10.98	15.94	16.54	18.69	6.53	12.56	19.42
Merged-chr2-167477233-3	chr2	167477124	167477324	+	842.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_148929)	TTS (NM_148929)	-15421.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	12.11	12.07	11.41	12.87	11.45	7.53	9.97	12.11	11.8	11.05	14.57	10.65
Merged-chr2-166657304-1	chr2	166657204	166657404	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56528.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.06	3.52	2.28	2.01	9.0	10.03	6.31	7.57	20.85	8.54	7.03	3.45
Merged-chr2-58281291-1	chr2	58281191	58281391	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040365, exon 3 of 4)	non-coding (NR_040365, exon 3 of 4)	4512.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	3.23	2.52	8.56	10.05	10.23	7.53	13.95	22.26	4.33	7.03	9.04	6.89
Merged-chr7-139684752-1	chr7	139684652	139684852	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-937.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	2.83	2.26	6.85	2.41	12.27	6.59	7.31	11.16	4.72	5.02	10.05	6.27
Merged-chr12-54203889-2	chr12	54203788	54203988	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028133)	promoter-TSS (NM_028133)	-14.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	8.48	4.02	7.99	4.83	9.82	16.62	10.3	12.03	16.33	9.54	23.11	15.66
Merged-chr4-130629513-2	chr4	130629419	130629619	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33802.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	6.86	7.29	6.28	6.44	12.68	10.66	9.63	13.93	6.69	14.06	20.1	12.22
Merged-chr17-35750056-3	chr17	35749996	35750196	+	842.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22354.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	1.21	5.28	6.85	6.03	2.05	7.84	4.32	4.79	12.19	21.09	15.58	15.98
Merged-chr10-81168988-3	chr10	81168879	81169079	+	842.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1259.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	11.31	10.31	10.27	19.71	14.32	15.37	9.3	15.56	21.64	10.54	20.1	2.82
Merged-chr1-134513965-3	chr1	134513809	134514009	+	842.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19249.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	4.85	10.56	5.7	7.64	3.68	6.9	6.31	4.82	8.46	7.53	20.6	8.14
Merged-chr13-119366369-1	chr13	119366269	119366469	+	842.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008710, exon 12 of 17)	exon (NM_008710, exon 12 of 17)	42642.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	2.02	2.52	2.28	0.8	0.0	1.25	3.65	7.09	12.98	8.54	18.59	8.14
Merged-chr15-77358810-3	chr15	77358698	77358898	+	842.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40312.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	5.65	10.06	9.13	6.44	7.77	20.38	3.99	11.16	12.19	7.53	5.02	9.71
Merged-chr17-35897007-1	chr17	35896907	35897107	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001142744)	TTS (NM_001142744)	371.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	2.02	6.79	4.56	5.23	13.09	10.35	1.99	8.52	22.23	13.05	9.04	7.21
Merged-chr14-31205464-1	chr14	31205364	31205564	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347583, intron 1 of 13)	intron (NM_001347583, intron 1 of 13)	1362.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.46	5.28	3.42	7.24	2.86	4.39	2.99	8.27	7.08	4.52	7.03	3.76
Merged-chr2-25663519-1	chr2	25663419	25663619	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5567.0	NM_001042630	13863.0	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	3.63	3.27	3.99	0.8	5.73	2.51	5.31	8.86	3.54	4.52	4.02	5.33
Merged-chr13-35079788-3	chr13	35079669	35079869	+	842.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85625.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	30.69	30.43	11.98	8.85	31.5	42.96	8.64	8.66	32.06	28.12	11.05	5.33
Merged-chr4-154246664-1	chr4	154246564	154246764	+	842.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001162977, intron 5 of 36)	intron (NM_001162977, intron 5 of 36)	53231.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	10.5	8.8	2.85	7.24	3.27	5.64	2.66	2.47	3.54	7.53	8.54	6.58
Merged-chr11-83067770-1	chr11	83067670	83067870	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	MTC|LTR|ERVL-MaLR	2658.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	2.02	8.8	8.56	3.22	15.96	10.03	2.66	8.52	11.41	14.56	6.53	4.7
Merged-chr8-120760037-2	chr8	120759942	120760142	+	842.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	21403.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.06	4.78	6.28	3.22	18.82	13.17	12.62	16.04	12.59	15.06	12.06	7.83
Merged-chr10-100882304-3	chr10	100882208	100882408	+	842.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140673.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	17.36	7.55	18.83	22.12	10.23	16.93	24.91	23.44	13.18	21.09	27.13	9.08
Merged-chr13-117052964-3	chr13	117052862	117053062	+	842.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-27446.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	18.57	12.83	7.99	16.09	20.86	15.37	7.64	21.53	19.87	9.54	16.08	8.14
Merged-chr16-57571331-3	chr16	57571215	57571415	+	842.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	22073.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	12.92	7.8	20.54	11.66	14.73	8.15	14.28	17.22	19.87	19.58	11.05	7.21
Merged-chr9-70841201-3	chr9	70841095	70841295	+	842.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	93613.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.67	9.31	11.41	6.03	11.86	19.76	10.63	8.78	9.24	8.54	18.59	7.52
Merged-chr2-94165054-1	chr2	94164954	94165154	+	842.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7145.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	3.63	2.52	3.99	1.61	7.77	10.35	9.97	14.72	7.08	11.55	9.55	9.4
Merged-chr10-51528077-3	chr10	51527968	51528168	+	842.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	37170.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	13.73	9.81	14.83	12.47	11.05	14.74	17.61	11.75	12.98	8.03	19.6	7.21
Merged-chr11-87639363-3	chr11	87639254	87639454	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045527, intron 5 of 5)	CpG	22190.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	11.31	8.05	16.54	5.23	11.45	14.11	18.6	15.79	11.01	9.04	19.6	8.14
Merged-chr7-122289858-3	chr7	122289729	122289929	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 1 of 16)	CpG	704.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	7.67	9.31	4.56	11.26	18.82	14.74	15.94	16.01	11.21	9.54	17.59	11.28
Merged-chr18-5101538-3	chr18	5101452	5101652	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347449, intron 22 of 30)	MRLTR33|LTR|ERVK	54963.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	13.73	6.04	10.27	11.26	19.23	44.84	33.22	47.02	18.69	9.04	14.07	9.4
Merged-chr7-80786928-3	chr7	80786825	80787025	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	16406.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.86	8.05	9.13	4.42	20.46	34.81	9.97	18.53	20.06	18.08	17.08	15.04
Merged-chr4-132505462-3	chr4	132505361	132505561	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	4995.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	13.73	8.3	12.55	6.84	14.32	11.29	25.58	15.81	21.64	15.06	17.08	12.22
Merged-chr10-88719633-3	chr10	88719532	88719732	+	842.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11469.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	8.88	11.82	18.25	12.87	13.09	8.15	16.61	17.38	19.47	11.55	13.06	14.72
Merged-chr18-62182113-2	chr18	62182001	62182201	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2001.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	16.15	7.8	14.26	10.05	17.18	17.56	8.64	6.48	20.26	15.57	12.06	8.77
Merged-chr5-124047199-2	chr5	124047104	124047304	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-14944.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.65	4.28	7.42	0.0	4.5	5.64	5.65	8.97	25.37	18.08	32.66	12.53
Merged-chr17-31005093-3	chr17	31004983	31005183	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	50400.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	9.29	7.04	11.98	14.08	13.91	9.41	11.63	14.05	31.86	16.07	25.12	20.99
Merged-chr7-49178363-1	chr7	49178263	49178463	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-16205.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	5.65	2.01	5.7	5.63	5.32	6.9	13.95	17.55	3.34	2.01	10.05	10.34
Merged-chr17-74159711-2	chr17	74159617	74159817	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111801.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	4.04	2.52	10.84	2.82	7.77	7.53	9.97	14.61	12.78	9.04	34.67	12.53
Merged-chr10-121477594-2	chr10	121477507	121477707	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1357.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	10.09	8.8	2.85	6.03	4.09	10.98	11.29	15.62	3.54	3.51	4.52	5.95
Merged-chr10-127731542-1	chr10	127731442	127731642	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009312, intron 6 of 6)	intron (NM_009312, intron 6 of 6)	6150.0	NM_009312	21334.0	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	4.85	4.02	6.85	2.01	8.18	6.59	5.31	8.8	4.92	6.53	13.57	3.45
Merged-chr12-86147459-1	chr12	86147359	86147559	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029601, intron 4 of 7)	L2b|LINE|L2	-21882.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	3.63	5.03	7.99	4.83	1.23	7.84	8.3	6.67	2.36	8.03	8.54	4.07
Merged-chr13-8644969-2	chr13	8644875	8645075	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	MIRb|SINE|MIR	226069.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.65	1.01	3.42	2.41	22.91	13.8	14.28	28.35	18.1	14.06	11.56	8.46
Merged-chr15-78271708-1	chr15	78271608	78271808	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13141.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	5.25	2.77	4.56	13.27	3.27	5.96	5.65	8.72	7.08	2.01	7.03	3.45
Merged-chr4-66861919-1	chr4	66861819	66862019	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34368.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.04	5.79	9.13	9.25	14.73	6.59	8.97	14.22	4.52	1.0	4.52	3.76
Merged-chr7-138398648-1	chr7	138398548	138398748	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183289)	promoter-TSS (NM_183289)	-918.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	2.83	4.78	5.13	7.24	6.55	10.98	5.31	9.28	5.31	1.51	9.04	0.94
Merged-chr11-115054699-2	chr11	115054597	115054797	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172050, intron 2 of 3)	intron (NM_172050, intron 2 of 3)	-6402.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	2.02	3.02	19.4	15.28	3.27	5.64	10.63	13.43	1.77	1.0	2.51	7.21
Merged-chr13-41502527-2	chr13	41502429	41502629	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15169.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	11.71	3.52	12.55	11.26	6.95	12.86	6.64	7.99	6.1	15.57	6.53	1.25
Merged-chr12-24980142-2	chr12	24980046	24980246	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	5214.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	4.04	1.51	2.85	1.61	2.05	7.53	4.32	6.0	28.52	27.11	66.83	19.74
Merged-chr8-83297573-1	chr8	83297473	83297673	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009463, intron 5 of 5)	intron (NM_009463, intron 5 of 5)	7225.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	11.31	7.29	6.85	6.84	12.27	6.9	2.99	9.59	5.9	6.53	9.04	4.7
Merged-chr18-44387297-3	chr18	44387228	44387428	+	842.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	6828.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	7.67	12.07	13.69	18.5	9.41	7.53	6.98	10.21	13.57	3.51	15.07	10.96
Merged-chr10-117879434-2	chr10	117879261	117879461	+	842.4500119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33387.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.27	3.02	3.42	5.63	6.14	6.9	9.3	9.67	9.83	5.52	6.03	8.14
Merged-chr13-8645463-3	chr13	8645388	8645588	+	842.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225556.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	9.29	4.02	1.14	10.05	36.82	39.82	27.24	39.28	41.11	15.06	47.74	20.05
Merged-chr2-181161658-3	chr2	181161562	181161762	+	842.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4647.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	24.23	13.58	17.11	22.93	1.23	7.53	4.65	6.95	9.44	5.02	21.1	12.22
Merged-chr2-174675842-3	chr2	174675761	174675961	+	842.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	32327.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	11.31	11.32	7.42	7.64	8.59	13.17	7.31	19.51	15.34	12.55	15.58	11.28
Merged-chr5-5180393-2	chr5	5180244	5180444	+	842.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	85724.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	10.5	9.06	15.4	10.05	10.64	5.64	1.99	11.61	3.15	1.51	6.03	2.19
Merged-chrX-7576622-3	chrX	7576524	7576724	+	842.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029473, intron 1 of 2)	L2a|LINE|L2	-2343.0	NM_138605	54646.0	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	10.9	6.04	11.98	7.24	9.41	9.41	10.63	8.41	7.47	15.06	29.65	10.65
Merged-chr4-136891772-3	chr4	136891664	136891864	+	842.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1150.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	4.44	14.59	19.97	10.46	8.18	17.56	4.98	4.49	10.03	16.07	18.09	10.65
Merged-chr12-3818158-3	chr12	3818048	3818248	+	842.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	10988.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.08	6.54	22.82	19.71	16.77	8.15	17.94	34.79	13.57	11.05	22.11	20.05
Merged-chr19-38020373-3	chr19	38020276	38020476	+	842.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	23201.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	16.15	7.04	12.55	18.5	23.32	17.87	4.98	17.69	12.98	5.52	9.55	11.9
Merged-chr9-44076928-3	chr9	44076830	44077030	+	842.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198092, intron 2 of 12)	intron (NM_198092, intron 2 of 12)	7501.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	8.48	9.31	8.56	9.65	11.05	12.54	6.98	10.12	14.36	8.03	24.12	15.35
Merged-chr8-11466270-1	chr8	11466170	11466370	+	842.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-11659.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.85	3.27	4.56	1.61	4.09	5.96	10.3	7.07	5.11	7.03	3.52	5.95
Merged-chr12-111516986-1	chr12	111516886	111517086	+	842.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21115.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	13.73	8.05	24.53	13.67	0.82	0.0	0.0	0.06	1.18	1.51	4.52	0.0
Merged-chr16-35754969-3	chr16	35754876	35755076	+	842.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	14380.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	10.5	4.78	7.99	9.25	3.27	14.11	11.96	12.36	23.01	25.11	19.6	8.14
Merged-chr1-92755423-3	chr1	92755306	92755506	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76239.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	9.69	6.79	22.25	17.7	14.73	10.35	30.23	26.41	12.19	2.51	16.58	5.33
Merged-chr19-21373532-3	chr19	21373416	21373616	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99145.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	11.71	11.82	9.13	13.27	17.59	17.56	18.27	20.3	9.83	11.05	31.66	12.84
Merged-chr15-25993539-3	chr15	25993434	25993634	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144523, intron 4 of 5)	intron (NM_144523, intron 4 of 5)	9168.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	11.71	7.8	4.56	8.85	15.14	14.11	5.65	18.56	33.04	22.59	24.62	11.9
Merged-chr14-57713032-3	chr14	57712934	57713134	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	21384.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.44	7.55	10.27	12.47	13.09	14.74	21.26	28.35	15.74	6.03	32.66	15.04
Merged-chr15-58990309-1	chr15	58990209	58990409	+	842.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	56499.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.04	3.52	7.99	2.01	8.18	9.72	6.31	9.28	5.51	4.02	7.03	3.45
Merged-chr18-53243988-5	chr18	53243922	53244122	+	842.2352289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1640.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.44	9.06	5.7	9.25	9.0	11.92	11.96	8.58	14.55	11.05	16.08	14.72
Merged-chr9-109039146-3	chr9	109039043	109039243	+	842.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025858, intron 1 of 5)	intron (NM_025858, intron 1 of 5)	576.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	8.88	10.56	6.28	5.63	9.41	14.42	9.3	6.34	9.64	14.56	11.56	5.64
Merged-chr2-163838254-3	chr2	163838159	163838359	+	842.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15491.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	12.92	18.36	19.97	9.25	8.18	15.37	5.98	17.22	15.54	12.55	27.13	5.64
Merged-chr7-36730825-1	chr7	36730725	36730925	+	842.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	32707.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	1.62	5.53	2.85	2.82	15.96	11.29	5.31	10.79	3.34	1.0	4.02	1.57
Merged-chr4-149820744-1	chr4	149820644	149820844	+	842.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46477.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.62	2.01	1.14	0.8	11.45	7.21	8.97	9.36	4.33	2.01	2.51	1.25
Merged-chr10-13324234-2	chr10	13324139	13324339	+	842.18335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033257)	promoter-TSS (NM_001033257)	50.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	1.62	4.28	7.99	3.62	11.86	11.6	9.97	9.87	10.42	10.54	20.6	8.14
Merged-chr10-60280033-3	chr10	60279945	60280145	+	842.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	B4A|SINE|B4	2417.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	11.71	7.29	20.54	8.45	12.27	3.45	19.93	20.44	18.49	8.54	10.55	34.15
Merged-chr15-7137110-3	chr15	7137030	7137230	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	-3412.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	12.11	4.02	12.55	6.44	6.55	12.23	2.66	18.2	14.55	10.54	11.05	9.4
Merged-chr9-85748503-3	chr9	85748398	85748598	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175371, intron 1 of 27)	intron (NM_175371, intron 1 of 27)	836.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	10.5	9.81	12.55	13.27	13.09	20.38	5.65	6.11	17.31	15.06	16.58	5.64
Merged-chr17-13682819-3	chr17	13682732	13682932	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77709.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	7.27	6.54	5.13	10.46	9.41	14.74	6.98	15.81	20.46	15.57	29.65	20.99
Merged-chr14-77909097-3	chr14	77908989	77909189	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4850.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	7.67	5.79	13.69	10.46	13.5	12.54	11.29	11.83	19.08	14.56	16.58	10.34
Merged-chr15-101979743-2	chr15	101979642	101979842	+	842.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	24600.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	10.9	10.06	0.0	2.01	4.91	16.62	10.63	12.0	6.88	15.57	11.05	5.64
Merged-chr10-30781226-2	chr10	30781145	30781345	+	842.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	22081.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.44	4.02	3.42	4.42	11.05	12.86	11.96	11.33	8.85	4.52	10.05	4.39
Merged-chr14-37109554-3	chr14	37109427	37109627	+	842.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206684, intron 1 of 2)	intron (NM_001206684, intron 1 of 2)	574.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	7.67	7.55	9.7	11.26	19.64	14.74	22.92	24.64	26.55	12.55	19.6	17.23
Merged-chr13-60479975-3	chr13	60479898	60480098	+	842.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121949.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	12.52	12.07	22.25	10.05	11.45	8.15	5.98	8.61	26.16	16.07	16.58	16.6
Merged-chr4-26347443-3	chr4	26347340	26347540	+	842.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-788.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	12.92	17.61	6.85	5.63	6.55	27.28	6.64	5.33	16.13	14.06	14.07	4.07
Merged-chr4-55797460-3	chr4	55797358	55797558	+	842.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-264983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.31	6.04	11.98	6.03	11.05	9.41	7.31	9.53	15.93	26.11	21.61	13.47
Merged-chr16-30790235-3	chr16	30790139	30790339	+	842.0944210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190516.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	9.29	7.8	16.54	22.12	12.68	17.56	28.57	23.78	13.57	21.09	38.19	7.21
Merged-chr1-186221887-2	chr1	186221756	186221956	+	842.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104546.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	7.67	8.55	5.7	10.86	13.5	7.21	8.3	12.25	0.2	0.0	1.0	1.25
Merged-chr12-69127376-2	chr12	69127284	69127484	+	842.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31802.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	9.29	6.54	7.99	5.23	14.32	13.48	9.3	14.07	15.34	12.55	14.57	5.95
Merged-chr4-107803927-3	chr4	107803830	107804030	+	842.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	1671.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	12.52	10.56	13.69	6.44	11.05	11.6	14.28	19.6	13.77	8.03	11.56	10.34
Merged-chr11-11820426-3	chr11	11820336	11820536	+	842.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-11474.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	11.31	14.09	11.98	12.47	13.5	10.35	6.31	14.24	14.36	19.08	16.08	8.77
Merged-chr17-33771113-3	chr17	33771007	33771207	+	842.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	10468.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	9.29	8.3	18.83	9.65	20.86	14.74	9.3	12.87	20.26	16.07	15.58	12.84
Merged-chr7-101060681-3	chr7	101060576	101060776	+	842.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-48099.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	8.88	10.82	21.68	13.27	9.82	12.54	18.27	15.62	13.37	10.04	17.08	9.4
Merged-chrX-159704732-3	chrX	159704575	159704775	+	842.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 2 of 17)	intron (NM_001135727, intron 2 of 17)	-3926.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	10.09	10.06	9.13	6.84	14.32	17.56	17.61	19.12	9.83	6.03	16.58	6.58
Merged-chr16-32651166-3	chr16	32651072	32651272	+	842.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110147, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	6529.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	12.52	11.82	13.69	12.47	2.86	14.42	11.63	15.34	12.78	9.04	10.05	5.64
Merged-chr10-68130017-4	chr10	68129994	68130194	+	842.020874	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	148632.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.63	4.02	5.13	8.04	1.64	4.39	3.32	2.83	4.33	4.02	6.03	0.94
Merged-chr12-21269801-1	chr12	21269701	21269901	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_008403)	TTS (NM_008403)	16483.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	15.34	10.06	14.26	6.84	5.73	9.72	4.98	3.56	0.39	0.0	0.5	0.31
Merged-chr6-135073838-1	chr6	135073738	135073938	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181444, intron 1 of 3)	intron (NM_181444, intron 1 of 3)	8176.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.0	1.26	1.14	1.61	0.41	0.94	5.98	8.52	0.39	0.0	0.0	2.51
Merged-chr10-60360925-1	chr10	60360825	60361025	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14074.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	1.21	1.51	1.14	0.8	1.64	2.82	7.31	7.71	1.18	1.51	3.01	1.57
Merged-chr9-40809869-3	chr9	40809746	40809946	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	8573.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	14.54	17.36	7.42	12.47	17.18	10.35	10.96	9.62	11.8	16.57	9.04	12.22
Merged-chr11-23023358-1	chr11	23023258	23023458	+	842.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028672, intron 3 of 3)	intron (NM_028672, intron 3 of 3)	9971.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	6.46	6.79	1.71	1.21	4.09	2.82	1.0	3.87	7.47	5.52	15.58	10.34
Merged-chr6-84661261-1	chr6	84661161	84661361	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	L1MD3|LINE|L1	-67353.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.06	5.03	4.56	6.84	5.32	12.23	4.32	7.63	6.29	3.01	7.03	1.88
Merged-chr4-33895198-3	chr4	33895102	33895302	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-29157.0	NM_001355020	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	16.96	11.07	14.83	15.28	12.27	15.68	17.61	28.35	4.52	9.04	14.07	6.27
Merged-chr3-142881495-2	chr3	142881403	142881603	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152127)	promoter-TSS (NR_152127)	501.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	12.11	22.64	11.98	16.49	17.18	19.13	25.91	23.19	24.78	35.15	21.1	19.74
Merged-chr7-83883229-2	chr7	83883090	83883290	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1151.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	4.04	11.57	9.13	3.62	9.82	13.48	11.63	4.01	8.85	13.05	7.54	15.66
Merged-chr15-6389590-1	chr15	6389490	6389690	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	2842.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	1.21	3.02	3.42	2.01	6.55	10.03	6.31	9.22	5.51	4.02	10.55	2.51
Merged-chr5-142400260-1	chr5	142400160	142400360	+	842.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-1237.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	2.83	2.26	0.57	2.41	4.09	8.15	0.66	2.89	23.01	19.58	10.55	9.08
Merged-chr6-110041657-1	chr6	110041557	110041757	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-603855.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	2.83	3.27	5.7	6.03	7.77	9.09	9.97	12.53	9.83	7.03	12.06	3.45
Merged-chr10-128910313-1	chr10	128910213	128910413	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007653, intron 1 of 7)	CpG	447.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	3.63	5.03	2.28	0.8	2.45	7.53	4.65	6.81	4.52	1.51	1.0	1.88
Merged-chr19-37692573-1	chr19	37692473	37692673	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001105201, intron 5 of 5)	intron (NM_001105201, intron 5 of 5)	-5235.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	3.23	3.77	4.56	6.44	2.05	8.47	3.32	5.72	0.98	3.51	0.0	0.63
Merged-chr14-64948987-1	chr14	64948887	64949087	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	870.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.81	4.02	3.42	1.21	4.09	6.27	4.98	3.17	4.52	5.02	4.02	0.0
Merged-chr7-30422754-1	chr7	30422654	30422854	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	348.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	21.4	21.13	10.84	3.62	11.05	32.61	6.98	7.77	38.55	44.69	13.57	14.41
Merged-chr18-67504143-3	chr18	67504044	67504244	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194355, intron 8 of 14)	intron (NM_194355, intron 8 of 14)	39295.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.04	6.54	12.55	10.46	19.23	18.5	13.62	24.87	9.05	2.51	13.06	4.39
Merged-chr16-90831232-1	chr16	90831132	90831332	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_133572, exon 1 of 6)	non-coding (NR_133572, exon 1 of 6)	373.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	3.63	3.52	3.99	4.02	2.05	2.82	11.29	4.99	6.29	3.01	9.04	4.7
Merged-chr5-64932849-1	chr5	64932749	64932949	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030682)	promoter-TSS (NM_030682)	-150.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.63	4.28	3.99	6.84	0.82	2.51	8.64	5.78	1.57	2.51	4.02	8.46
Merged-chr10-18195222-1	chr10	18195122	18195322	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	15668.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	2.83	6.54	6.85	6.03	6.14	10.35	9.97	9.17	9.44	8.54	3.01	2.51
Merged-chr3-129943987-1	chr3	129943887	129944087	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	26219.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.23	2.52	9.13	2.01	8.59	9.72	3.32	10.85	2.75	2.51	18.09	7.21
Merged-chr10-98972550-3	chr10	98972457	98972657	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	57405.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	12.92	13.83	17.11	14.48	13.09	21.64	7.31	15.64	20.46	11.05	18.09	12.53
Merged-chr10-22390644-1	chr10	22390544	22390744	+	842.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-12169.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	2.83	0.5	0.0	4.02	0.0	0.63	0.0	0.56	11.6	6.03	12.56	4.7
Merged-chr3-75744265-1	chr3	75744165	75744365	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-88534.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	1.21	5.53	6.28	8.45	5.73	7.84	1.66	8.47	3.34	3.01	6.03	5.01
Merged-chr11-95837310-1	chr11	95837210	95837410	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-4985.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	4.44	0.25	1.14	0.0	1.64	2.51	0.33	2.94	4.72	10.04	0.0	2.51
Merged-chr1-36988629-1	chr1	36988529	36988729	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-49102.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.44	4.28	9.13	1.61	4.09	4.08	6.98	7.07	4.92	5.02	1.0	2.19
Merged-chr8-56862317-1	chr8	56862217	56862417	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	311183.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	2.42	2.77	2.28	5.63	8.59	3.14	5.65	10.37	1.38	1.51	4.52	0.63
Merged-chr13-74807202-1	chr13	74807102	74807302	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301153, intron 1 of 31)	intron (NM_001301153, intron 1 of 31)	758.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	2.42	4.28	2.85	6.03	3.27	8.47	12.95	22.23	1.57	2.01	7.03	12.53
Merged-chr6-129393412-1	chr6	129393312	129393512	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3885.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	5.65	4.02	3.42	2.41	3.68	1.88	10.63	6.14	5.31	6.03	4.52	2.19
Merged-chr8-122556234-2	chr8	122556122	122556322	+	841.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4893.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	6.86	5.28	6.85	2.41	11.86	14.11	5.31	8.55	17.51	10.04	7.03	8.46
Merged-chr9-115236474-3	chr9	115236383	115236583	+	841.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45587.0	NR_029430	111186.0	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	5.25	3.52	1.14	4.02	3.68	2.51	4.32	7.26	13.37	14.56	14.07	10.65
Merged-chr2-51014473-3	chr2	51014363	51014563	+	841.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104779.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	14.13	7.04	2.28	6.03	6.95	16.93	11.29	20.07	18.1	17.07	23.62	6.27
Merged-chr17-78245082-3	chr17	78244974	78245174	+	841.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	44826.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	19.79	9.31	10.27	12.47	13.5	13.48	10.3	12.5	19.47	12.05	13.06	16.29
Merged-chr3-88522264-3	chr3	88522164	88522364	+	841.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10131.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	10.9	9.31	9.7	9.25	10.23	9.41	2.66	9.2	13.77	13.05	17.59	14.1
Merged-chr9-90243121-2	chr9	90243029	90243229	+	841.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	27640.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.21	4.78	17.11	4.42	17.59	13.8	18.6	32.69	12.78	5.52	11.56	5.01
Merged-chr14-98956948-2	chr14	98956843	98957043	+	841.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89193.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	8.08	7.55	11.41	17.29	28.64	17.87	24.58	49.15	5.7	1.0	3.52	8.14
Merged-chr19-53420020-2	chr19	53419927	53420127	+	841.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29393.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	8.08	9.06	10.84	13.27	12.68	15.99	11.63	9.7	7.87	6.03	8.04	4.39
Merged-chr13-113322234-2	chr13	113322135	113322335	+	841.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112576.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	23.02	9.31	15.4	24.13	13.09	7.21	5.98	8.07	3.34	6.53	7.03	15.66
Merged-chr6-129103343-3	chr6	129103250	129103450	+	841.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2447.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	5.65	6.04	12.55	11.26	13.5	11.29	10.3	16.32	21.24	15.06	21.61	13.47
Merged-chr8-48110094-3	chr8	48109989	48110189	+	841.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161515)	promoter-TSS (NM_001161515)	76.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	7.27	11.07	5.7	18.1	12.68	14.42	28.57	17.5	8.06	12.55	9.04	10.65
Merged-chr16-94572568-3	chr16	94572336	94572536	+	841.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	1529.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	1.21	4.53	6.85	4.42	2.86	3.76	0.33	0.53	2.95	5.52	1.51	5.64
Merged-chr19-55655685-2	chr19	55655586	55655786	+	841.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	(CAGTG)n|Simple_repeat|Simple_repeat	46518.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.27	5.28	9.13	5.23	11.86	17.87	4.98	11.55	14.36	18.58	12.56	6.89
Merged-chr7-35054981-2	chr7	35054949	35055149	+	841.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	1517.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	10.9	4.53	1.14	1.21	6.95	8.78	4.32	10.07	11.01	6.03	10.05	5.01
Merged-chr11-69948384-4	chr11	69948318	69948518	+	841.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-221.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	6.46	6.54	2.85	5.23	4.91	8.15	7.64	4.15	10.03	8.03	4.02	4.07
Merged-chr13-12106829-1	chr13	12106729	12106929	+	841.75	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_023868, exon 1 of 105)	5' UTR (NM_023868, exon 1 of 105)	116.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	6.46	8.55	2.28	7.24	8.59	6.9	7.31	3.84	6.49	6.03	6.03	2.51
Merged-chr13-58452402-3	chr13	58452305	58452505	+	841.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49062.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	10.9	12.32	14.26	8.04	12.68	13.8	10.3	21.48	21.24	12.55	46.23	10.34
Merged-chr16-13902306-3	chr16	13902241	13902441	+	841.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289562)	promoter-TSS (NM_001289562)	804.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	8.88	8.55	11.41	8.85	17.59	16.93	13.29	20.02	13.96	11.05	14.07	13.47
Merged-chr9-99139635-3	chr9	99139526	99139726	+	841.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	CpG	585.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	8.88	3.77	5.7	5.63	9.82	11.92	2.99	5.83	17.11	18.58	15.07	15.98
Merged-chr9-78430666-3	chr9	78430543	78430743	+	841.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_125721, exon 5 of 5)	non-coding (NR_125721, exon 5 of 5)	12594.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	12.52	6.79	7.99	10.46	15.96	20.7	8.97	19.77	18.1	5.02	21.61	9.71
Merged-chr8-41298545-3	chr8	41298446	41298646	+	841.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 22 of 37)	L1MA5A|LINE|L1	58787.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	7.67	11.07	13.12	5.63	7.36	20.07	8.64	14.27	33.63	28.12	16.08	20.68
Merged-chr10-78069763-3	chr10	78069699	78069899	+	841.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015790, intron 1 of 6)	CpG	431.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	21.4	10.56	6.85	12.07	12.27	11.92	12.95	15.06	14.36	9.54	15.07	12.22
Merged-chr2-167293512-3	chr2	167293386	167293586	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52949.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	10.09	3.52	15.4	7.64	23.32	29.16	20.26	37.09	21.64	5.02	13.06	15.04
Merged-chr7-30563709-3	chr7	30563620	30563820	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025498)	promoter-TSS (NM_025498)	380.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	12.92	12.07	14.26	8.85	6.95	16.93	8.97	16.96	19.47	14.06	22.61	6.58
Merged-chr3-145105121-1	chr3	145105021	145105221	+	841.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6015.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	5.65	5.79	7.42	7.24	9.82	15.37	11.29	3.45	12.0	6.03	2.51	5.95
Merged-chr6-135951837-1	chr6	135951737	135951937	+	841.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	221674.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	2.42	0.0	0.0	0.0	0.82	0.63	1.66	2.75	16.72	9.04	13.06	9.71
Merged-chr10-97283014-3	chr10	97282914	97283114	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-140464.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	10.5	3.77	22.25	14.88	16.36	15.68	15.94	25.77	17.7	10.04	19.09	13.16
Merged-chr8-120364569-3	chr8	120364454	120364654	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124312.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	18.17	17.86	10.84	7.64	6.14	19.44	8.97	14.94	12.78	22.09	14.57	7.83
Merged-chr19-46899512-2	chr19	46899410	46899610	+	841.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	62841.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	13.73	4.53	13.69	13.27	19.23	17.56	16.61	26.58	2.16	4.52	8.04	2.82
Merged-chr11-44392712-2	chr11	44392614	44392814	+	841.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7349.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	9.69	6.54	8.56	14.08	15.55	17.56	10.96	11.94	8.26	3.51	8.04	3.45
Merged-chr6-39379930-3	chr6	39379807	39380007	+	841.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1446.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	9.69	8.05	15.97	20.11	12.27	10.35	9.97	7.49	14.16	6.53	10.05	8.14
Merged-chr10-7833365-2	chr10	7833262	7833462	+	841.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	L1MB3|LINE|L1	892.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	5.65	10.31	13.12	0.4	11.86	12.54	7.64	13.01	5.7	9.04	4.02	7.21
Merged-chr5-103755514-2	chr5	103755440	103755640	+	841.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	967.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	10.5	4.53	5.13	3.22	8.18	6.9	5.98	8.5	13.57	5.52	6.53	9.4
Merged-chr17-70999346-2	chr17	70999243	70999443	+	841.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	-1331.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	2.83	4.78	9.13	8.04	11.86	9.41	7.31	10.65	15.93	8.54	12.56	7.52
Merged-chr6-4618115-3	chr6	4618016	4618216	+	841.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145398, intron 5 of 17)	intron (NM_145398, intron 5 of 17)	17050.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	10.5	10.82	15.4	15.69	12.27	13.17	11.29	27.64	13.77	7.03	26.13	8.46
Merged-chr7-89243908-2	chr7	89243807	89244007	+	841.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	94880.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.88	8.55	12.55	11.26	27.41	8.78	7.97	25.54	17.11	13.56	9.55	7.21
Merged-chr1-87649075-4	chr1	87649018	87649218	+	841.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	28806.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	10.5	9.81	11.41	10.86	4.09	8.47	13.62	8.78	10.42	11.55	11.56	5.01
Merged-chr7-109480993-3	chr7	109480908	109481108	+	841.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181853, exon 7 of 20)	exon (NM_181853, exon 7 of 20)	12730.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	3.23	14.34	35.94	16.09	5.32	6.9	3.65	9.22	14.95	10.04	13.57	15.04
Merged-chr1-185350020-2	chr1	185349928	185350128	+	841.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-13016.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	9.69	11.32	2.28	16.09	11.86	18.5	13.62	24.87	0.98	2.51	5.02	0.63
Merged-chr8-46896840-3	chr8	46896726	46896926	+	841.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-90061.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.23	6.79	15.97	8.04	15.96	11.6	11.29	10.37	9.24	6.03	18.59	14.72
Merged-chr6-89362748-5	chr6	89362630	89362830	+	841.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	-117.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	7.67	4.53	5.13	9.65	8.18	8.78	5.31	5.61	15.54	9.04	15.07	6.89
Merged-chr4-46308055-1	chr4	46307955	46308155	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-36139.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	2.83	9.06	6.85	4.02	6.95	18.5	4.65	9.48	3.15	6.03	3.01	3.13
Merged-chr10-9136283-1	chr10	9136183	9136383	+	841.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250213.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	1.26	0.0	5.63	1.64	4.7	5.65	3.39	14.16	17.57	9.04	5.95
Merged-chr8-94364888-3	chr8	94364786	94364986	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-21543.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	15.34	19.37	14.26	11.26	8.59	20.38	6.98	7.46	13.77	24.6	23.11	12.53
Merged-chr8-119339507-1	chr8	119339407	119339607	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5031.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.23	4.02	9.13	9.25	6.95	9.41	10.3	13.21	3.93	2.01	3.52	6.58
Merged-chr10-81303959-1	chr10	81303859	81304059	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10996.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	6.86	9.31	7.42	4.02	17.18	11.29	5.98	10.85	12.19	8.03	8.04	4.7
Merged-chr16-45283277-1	chr16	45283177	45283377	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58940.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	5.25	5.79	5.7	3.22	5.73	6.27	5.98	7.77	7.08	6.53	5.02	3.76
Merged-chr10-122680100-2	chr10	122680008	122680208	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106182)	TTS (NR_106182)	793.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	4.44	6.79	10.27	9.65	12.27	5.64	15.94	9.53	9.64	9.54	11.05	11.28
Merged-chr15-40944101-1	chr15	40944001	40944201	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-229600.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	1.62	3.02	2.28	3.22	7.77	4.08	10.96	8.41	4.33	6.53	8.04	5.33
Merged-chr19-41088458-3	chr19	41088389	41088589	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-11376.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	10.9	7.8	14.83	10.86	13.5	7.21	10.3	12.2	14.55	13.56	8.54	10.96
Merged-chr6-30460093-3	chr6	30459991	30460191	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131049)	promoter-TSS (NR_131049)	-894.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	10.09	9.31	6.28	6.44	18.41	17.87	12.62	11.07	22.23	9.04	27.64	8.14
Merged-chr17-65605082-3	chr17	65604970	65605170	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	Tigger7|DNA|TcMar-Tigger	8485.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.25	14.84	11.41	15.28	7.36	9.72	6.31	11.05	9.44	6.03	14.57	9.71
Merged-chr10-93375496-2	chr10	93375393	93375593	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39282.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	8.88	8.05	12.55	10.05	19.23	18.81	19.93	28.49	3.15	4.02	1.51	2.19
Merged-chr6-17643010-3	chr6	17642929	17643129	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	18.57	15.09	13.69	9.25	15.14	14.42	10.63	12.14	24.98	15.57	14.57	10.02
Merged-chr10-110733511-3	chr10	110733421	110733621	+	841.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11918.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	11.71	6.04	10.27	17.29	11.86	17.25	13.62	19.09	13.77	17.57	29.14	10.65
Merged-chr1-92911159-3	chr1	92911030	92911230	+	841.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	305.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	10.09	6.79	10.27	10.05	16.36	14.11	10.63	16.74	15.14	10.54	20.6	8.77
Merged-chr5-62753018-3	chr5	62752920	62753120	+	841.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	13157.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	8.48	9.31	9.13	20.11	13.5	13.17	13.95	30.39	18.1	7.03	11.56	9.71
Merged-chr7-126583444-3	chr7	126583348	126583548	+	841.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-212.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	12.11	7.29	2.85	6.03	9.0	21.95	3.99	3.42	7.28	13.56	4.02	7.83
Merged-chr10-30660746-3	chr10	30660649	30660849	+	841.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-4882.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	8.48	13.33	11.41	7.24	8.59	17.56	8.97	14.41	28.13	19.08	17.59	12.84
Merged-chr4-106804429-3	chr4	106804323	106804523	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347159, intron 1 of 15)	intron (NM_001347159, intron 1 of 15)	584.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	9.69	10.56	23.39	12.87	10.64	15.99	6.98	13.18	13.37	3.51	5.53	10.65
Merged-chr8-104630837-3	chr8	104630762	104630962	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019662, exon 2 of 5)	exon (NM_019662, exon 2 of 5)	459.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	8.48	7.04	10.27	14.08	8.59	12.54	16.28	6.81	12.19	11.05	17.08	7.52
Merged-chr1-170176962-3	chr1	170176851	170177051	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1987.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	12.92	7.8	13.12	7.64	14.32	5.64	6.98	8.3	17.7	13.05	23.11	5.64
Merged-chr17-50330410-3	chr17	50330308	50330508	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36788.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	14.94	9.06	25.1	18.9	25.36	23.52	23.92	34.32	10.82	11.55	7.54	15.04
Merged-chr15-8633794-2	chr15	8633660	8633860	+	841.43335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_148938)	TTS (NM_148938)	77047.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.02	3.27	4.56	2.01	4.5	4.08	9.63	5.75	7.67	13.05	9.55	6.27
Merged-chr13-52579645-3	chr13	52579535	52579735	+	841.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3802.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	13.73	11.57	15.4	6.84	18.41	13.8	4.32	11.47	11.8	8.03	7.54	10.96
Merged-chr1-78713249-1	chr1	78713149	78713349	+	841.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	54809.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.85	2.77	7.99	8.04	9.0	10.98	10.3	12.17	3.15	5.02	4.52	2.51
Merged-chr7-97788591-6	chr7	97788481	97788681	+	841.39447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357364)	promoter-TSS (NM_001357364)	40.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	19.79	28.67	3.99	8.45	13.5	14.74	8.3	6.76	9.64	17.57	12.56	7.83
Merged-chr12-80668519-3	chr12	80668428	80668628	+	841.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026244, intron 3 of 6)	intron (NM_026244, intron 3 of 6)	23938.0	NR_037995	68354.0	Mm.46194	NR_037995		Plekhd1os	0610009B14Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand	ncRNA	10.09	4.53	12.55	15.28	13.09	7.21	11.63	8.89	10.03	3.51	12.56	2.82
Merged-chr13-12257245-3	chr13	12257132	12257332	+	841.3833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	881.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	10.5	6.29	6.85	9.25	6.14	5.64	5.98	11.64	9.05	16.07	20.1	8.77
Merged-chr2-181496308-5	chr2	181496168	181496368	+	841.353333	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-874.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	4.85	2.52	4.56	6.03	4.91	2.51	1.0	1.79	23.8	24.6	18.09	17.23
Merged-chr10-67081800-2	chr10	67081698	67081898	+	841.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	15190.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	12.52	5.03	11.41	13.67	14.73	13.17	3.99	12.64	12.19	2.01	6.53	3.45
Merged-chr7-67551439-2	chr7	67551335	67551535	+	841.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	93801.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	6.06	6.04	7.42	12.47	20.05	19.76	14.95	24.45	11.41	4.02	12.56	9.08
Merged-chr1-71103666-1	chr1	71103566	71103766	+	841.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-694.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	2.02	12.32	2.28	7.24	9.82	11.29	7.97	6.59	12.0	5.52	10.55	4.7
Merged-chr4-156216362-3	chr4	156216287	156216487	+	841.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172417, intron 1 of 3)	intron (NM_172417, intron 1 of 3)	460.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	9.69	9.31	11.98	5.23	11.45	7.53	7.31	10.51	7.28	4.52	19.09	9.4
Merged-chr17-67342203-3	chr17	67342095	67342295	+	841.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	RMER15|LTR|ERVL	12264.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	13.73	9.81	3.42	4.42	6.95	15.99	2.66	8.47	6.88	10.04	4.52	7.21
Merged-chr1-94078503-3	chr1	94078402	94078602	+	841.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-25949.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	14.94	10.31	17.68	30.97	25.77	12.86	28.23	29.27	9.83	3.01	22.61	8.77
Merged-chr5-72230804-3	chr5	72230707	72230907	+	841.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	27464.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.27	9.06	21.11	17.29	13.91	13.8	9.3	28.18	24.59	9.04	20.6	11.28
Merged-chr3-136253043-3	chr3	136252943	136253143	+	841.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 3 of 16)	intron (NM_001033350, intron 3 of 16)	73023.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	11.31	3.77	21.68	10.46	25.36	20.07	24.25	23.33	15.54	26.11	33.67	15.98
Merged-chr7-141370136-3	chr7	141370034	141370234	+	841.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5024.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	10.5	9.56	10.27	10.86	16.77	6.59	6.98	22.21	13.37	9.04	17.59	12.84
Merged-chr1-92992436-3	chr1	92992323	92992523	+	841.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	13520.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	9.29	3.52	5.7	9.25	13.09	10.03	7.31	20.19	10.23	5.02	14.57	12.84
Merged-chr10-13961672-3	chr10	13961571	13961771	+	841.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4404.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.48	9.31	10.27	5.63	7.77	15.99	7.97	12.98	27.34	27.62	30.15	19.11
Merged-chr18-50074470-1	chr18	50074370	50074570	+	841.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	L2a|LINE|L2	-20808.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	4.04	1.51	2.85	11.66	10.64	7.21	7.64	8.33	3.15	0.0	0.0	0.0
Merged-chr6-94045337-2	chr6	94045237	94045437	+	841.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	RMER15|LTR|ERVL	-131647.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	8.08	8.05	15.97	17.7	21.27	46.41	40.19	62.64	8.06	3.01	18.09	6.58
Merged-chr17-28522703-3	chr17	28522618	28522818	+	841.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8143.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	14.94	7.04	14.83	6.44	20.86	9.72	7.31	9.36	16.92	21.59	18.09	14.41
Merged-chr2-102850000-1	chr2	102849900	102850100	+	841.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	51665.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.04	2.52	5.7	6.44	10.23	6.9	6.98	20.66	4.92	4.52	2.01	2.51
Merged-chr15-88101597-2	chr15	88101480	88101680	+	841.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-213294.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	10.9	8.55	10.84	19.71	29.05	13.48	24.58	30.95	0.0	0.0	0.0	0.0
Merged-chr15-88178621-1	chr15	88178521	88178721	+	841.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.81	3.27	2.28	5.63	9.41	11.29	4.98	14.1	0.98	0.0	0.0	0.63
Merged-chr10-20673921-3	chr10	20673820	20674020	+	841.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	51158.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	13.73	5.03	22.25	12.07	17.59	8.47	19.6	25.77	10.82	7.53	10.55	5.33
Merged-chr11-111101886-3	chr11	111101803	111102003	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35739.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	8.08	8.05	9.7	3.62	22.09	30.42	11.96	20.86	13.37	17.57	7.54	3.76
Merged-chr11-105590077-3	chr11	105590005	105590205	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181071, exon 1 of 26)	5' UTR (NM_181071, exon 1 of 26)	119.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	15.34	10.06	7.99	6.84	9.41	10.03	9.3	2.07	17.11	5.52	21.1	11.28
Merged-chr13-23720993-3	chr13	23720892	23721092	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-10138.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	5.25	10.82	18.25	11.26	9.82	15.05	13.29	10.6	9.24	5.52	11.05	12.84
Merged-chr8-70755187-3	chr8	70755087	70755287	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166399, intron 1 of 4)	CpG	508.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.25	9.56	7.42	9.25	21.27	19.44	12.95	24.34	15.34	11.05	18.09	16.6
Merged-chr11-68866008-2	chr11	68865903	68866103	+	841.216675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12872.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	20.19	7.55	9.13	9.25	15.96	12.23	14.95	11.02	21.83	10.54	15.07	8.77
Merged-chr6-113750296-3	chr6	113750246	113750446	+	841.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-9665.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	8.08	8.3	2.85	8.45	7.36	7.53	8.3	9.53	12.19	10.04	13.57	14.1
Merged-chr8-40890398-1	chr8	40890298	40890498	+	841.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007514, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	28031.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.0	1.26	0.0	0.0	0.0	0.63	0.0	0.87	11.8	13.56	14.57	12.22
Merged-chr12-76196160-3	chr12	76196054	76196254	+	841.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18895.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	21.0	12.83	10.27	18.9	9.82	14.74	9.3	11.92	12.39	10.04	14.07	11.28
Merged-chr10-60246732-3	chr10	60246607	60246807	+	841.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27447.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	14.94	10.31	15.4	7.64	21.27	20.07	9.97	13.68	16.52	12.05	16.08	5.64
Merged-chr5-123391539-3	chr5	123391447	123391647	+	841.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-3251.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	20.19	16.6	9.7	8.45	20.86	25.09	10.3	12.73	24.39	36.65	19.09	10.02
Merged-chr1-87873228-3	chr1	87873130	87873330	+	841.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-18931.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	11.71	4.02	16.54	18.5	6.14	11.92	16.61	20.22	12.39	14.06	15.07	12.22
Merged-chr9-58552861-3	chr9	58552781	58552981	+	841.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11941.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	16.56	11.57	6.85	2.41	13.91	25.09	5.65	6.7	10.23	13.05	12.06	2.19
Merged-chr2-52966417-3	chr2	52966300	52966500	+	841.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	108532.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	12.52	12.58	11.41	10.86	15.55	21.01	8.3	15.25	14.55	9.54	12.56	10.34
Merged-chr2-180120284-3	chr2	180120192	180120392	+	841.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	926.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	11.31	8.3	7.42	4.02	16.77	15.05	4.32	13.63	10.82	10.04	7.54	9.08
Merged-chr11-23688291-3	chr11	23688188	23688388	+	841.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	ID4_|SINE|ID	22312.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	4.85	8.8	21.68	19.31	18.41	7.53	9.3	16.82	11.21	14.56	21.61	9.08
Merged-chr8-128168163-3	chr8	128168066	128168266	+	841.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	110059.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	10.09	8.05	14.83	6.03	8.18	7.53	4.98	12.62	34.42	27.62	39.7	30.7
Merged-chr2-60175359-1	chr2	60175259	60175459	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34577.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.85	3.02	3.42	8.04	11.45	8.78	12.95	8.83	8.65	8.03	7.03	10.02
Merged-chr9-51076683-1	chr9	51076583	51076783	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	411.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	4.04	3.02	2.28	1.21	7.77	5.33	7.31	9.62	3.15	3.51	10.55	3.45
Merged-chr14-77911600-3	chr14	77911476	77911676	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	7337.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	11.71	7.29	9.13	20.11	6.95	10.03	9.63	16.04	25.96	15.06	16.08	11.59
Merged-chr5-98692225-1	chr5	98692125	98692325	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 3 of 5)	MLT1C|LTR|ERVL-MaLR	-162190.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	2.83	1.26	3.42	2.82	4.91	5.33	4.98	7.09	3.34	2.01	0.0	4.39
Merged-chr2-45102288-1	chr2	45102188	45102388	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7989.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.63	3.27	0.0	2.01	4.09	4.39	0.33	1.43	8.46	2.51	1.0	0.31
Merged-chr1-121329581-1	chr1	121329481	121329681	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178082, intron 1 of 5)	MTEb|LTR|ERVL-MaLR	-1557.0	NM_133748	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.0	1.01	0.0	1.21	2.45	4.39	10.63	6.64	4.92	5.52	7.54	2.19
Merged-chr7-101466370-1	chr7	101466270	101466470	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-9006.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	6.06	2.52	6.28	0.8	7.77	9.09	4.98	13.54	1.77	1.51	2.01	5.01
Merged-chr11-4974719-2	chr11	4974656	4974856	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-12068.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	22.61	11.57	10.84	4.42	18.41	15.99	10.96	8.89	8.85	7.53	7.03	7.21
Merged-chr2-34773326-1	chr2	34773226	34773426	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163434, intron 4 of 8)	intron (NM_001163434, intron 4 of 8)	1236.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	17.36	12.58	2.28	6.03	10.64	19.44	1.33	2.1	15.34	12.55	5.02	6.89
Merged-chr10-35348945-1	chr10	35348845	35349045	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	865545.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.81	2.52	3.42	3.22	4.91	5.64	9.63	11.61	8.06	5.02	9.04	3.13
Merged-chr10-21845490-1	chr10	21845390	21845590	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-36694.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.23	5.03	2.28	2.82	5.73	12.23	5.98	10.32	4.92	10.54	5.53	3.76
Merged-chr4-134558032-2	chr4	134557913	134558113	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5847.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	10.09	8.05	6.28	9.25	18.0	8.47	2.33	6.0	17.11	8.03	4.52	7.52
Merged-chr15-103366118-1	chr15	103366018	103366218	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314041, intron 1 of 30)	CpG	673.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	10.09	5.79	4.56	3.22	1.64	11.92	11.96	1.68	8.85	6.03	6.03	3.13
Merged-chr5-113636485-2	chr5	113636398	113636598	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7105.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.04	2.01	1.14	7.24	6.55	8.78	7.97	9.76	15.54	16.07	10.05	3.76
Merged-chr3-96239615-2	chr3	96239507	96239707	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	-465.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	14.94	11.32	13.69	20.11	13.5	15.05	5.98	5.75	7.47	6.03	13.57	3.76
Merged-chr19-45958725-2	chr19	45958627	45958827	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 9 of 25)	intron (NM_198296, intron 9 of 25)	-39410.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	1.21	1.26	14.83	8.04	7.36	1.88	8.3	13.54	9.64	12.55	19.09	10.34
Merged-chr13-104976018-1	chr13	104975918	104976118	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 3 of 5)	intron (NM_029879, intron 3 of 5)	78912.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	2.42	1.26	1.14	3.22	4.5	1.25	8.64	6.62	2.95	3.51	1.0	4.39
Merged-chr11-101763866-1	chr11	101763766	101763966	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144831, intron 19 of 22)	intron (NM_144831, intron 19 of 22)	21444.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	4.44	3.27	0.0	5.23	4.91	12.54	3.32	6.87	9.24	4.02	8.54	5.01
Merged-chr17-47925483-1	chr17	47925383	47925583	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	-851.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	9.69	12.58	2.85	0.8	2.45	13.48	0.66	3.79	14.36	10.04	8.04	1.25
Merged-chr1-148821706-2	chr1	148821631	148821831	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1100708.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.04	2.01	5.7	4.02	2.05	0.63	7.31	8.69	9.05	10.04	20.6	6.89
Merged-chr2-14228702-3	chr2	14228592	14228792	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-722.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	10.5	8.3	22.82	13.67	17.18	11.29	11.96	21.64	12.98	13.56	13.57	9.71
Merged-chr7-39484588-1	chr7	39484488	39484688	+	841.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-33178.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.0	0.5	0.57	0.0	0.0	0.63	1.33	1.21	12.78	6.03	14.57	1.57
Merged-chr6-72550885-1	chr6	72550785	72550985	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	L3|LINE|CR1	1238.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.85	2.26	4.56	2.82	11.45	5.64	8.64	9.42	12.98	7.53	4.02	4.07
Merged-chr6-119883342-2	chr6	119883254	119883454	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19344.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	6.86	6.29	13.12	15.69	3.68	5.02	6.64	8.83	4.92	4.52	4.02	1.57
Merged-chr14-122297052-1	chr14	122296952	122297152	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-63414.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	4.04	3.02	2.28	5.23	1.64	0.63	7.64	7.15	3.34	7.53	5.53	3.76
Merged-chr3-94997111-3	chr3	94997011	94997211	+	840.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293715, intron 8 of 11)	intron (NM_001293715, intron 8 of 11)	-7057.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	8.88	12.07	12.55	12.87	15.55	15.99	3.99	9.87	15.14	15.57	6.03	11.9
Merged-chr15-89078451-4	chr15	89078419	89078619	+	840.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026485, intron 1 of 9)	intron (NM_026485, intron 1 of 9)	2455.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	5.65	7.04	9.13	4.83	6.14	8.47	11.29	7.15	16.13	13.56	14.07	5.64
Merged-chr3-51648493-3	chr3	51648394	51648594	+	840.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12685.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	10.5	9.31	2.28	9.65	11.86	12.23	1.33	9.93	17.31	13.05	18.09	11.59
Merged-chr1-152808424-3	chr1	152808344	152808544	+	840.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8291.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	10.09	9.56	4.56	8.04	7.77	14.42	7.64	4.35	15.93	5.52	17.08	14.1
Merged-chr10-122007893-3	chr10	122007789	122007989	+	840.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	39426.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	19.79	11.07	9.13	16.09	14.73	30.73	23.92	25.96	11.41	11.55	17.08	11.59
Merged-chr14-75837683-3	chr14	75837587	75837787	+	840.92218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7277.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	8.88	13.58	18.25	9.25	9.41	10.35	11.29	12.67	18.1	18.58	16.08	13.16
Merged-chr10-81299724-2	chr10	81299698	81299898	+	840.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	6835.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	1.62	5.79	1.14	4.02	4.5	1.57	6.98	2.94	5.7	6.03	3.01	2.51
Merged-chr7-107259342-2	chr7	107259245	107259445	+	840.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49900.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	10.9	9.31	14.83	23.73	18.0	12.54	27.57	35.5	4.33	3.01	5.53	3.13
Merged-chr4-59261240-2	chr4	59261144	59261344	+	840.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	1193.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	8.48	3.27	2.85	6.03	14.32	12.23	5.31	6.9	15.74	14.06	8.04	5.95
Merged-chr10-127167447-3	chr10	127167348	127167548	+	840.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027739, intron 3 of 9)	intron (NM_027739, intron 3 of 9)	1617.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	9.69	12.83	11.41	8.45	11.05	14.11	5.98	13.26	6.88	9.04	25.63	12.53
Merged-chr16-26035715-3	chr16	26035608	26035808	+	840.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70076.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	14.13	8.3	10.27	23.33	15.55	7.53	4.32	28.77	18.49	4.02	10.05	9.71
Merged-chr11-90492275-3	chr11	90492185	90492385	+	840.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101368.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	6.06	12.83	23.39	13.67	5.32	10.35	4.32	11.8	19.08	15.57	21.61	10.65
Merged-chr9-118856852-3	chr9	118856753	118856953	+	840.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-69683.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	13.73	9.31	15.4	13.67	6.95	13.8	21.92	26.02	17.9	7.53	9.55	9.4
Merged-chr6-113625304-2	chr6	113625247	113625447	+	840.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009507, intron 1 of 2)	B1_Mm|SINE|Alu	1326.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	11.71	5.53	6.85	3.22	4.91	7.21	2.99	4.77	3.93	6.53	10.05	6.58
Merged-chr9-110841610-2	chr9	110841521	110841721	+	840.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153172)	TTS (NM_153172)	-2885.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	2.02	4.53	7.42	11.26	13.09	10.03	11.29	9.84	10.82	12.55	7.54	7.21
Merged-chr15-101335120-1	chr15	101335020	101335220	+	840.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34232.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	3.63	5.53	9.13	10.05	11.05	8.78	9.97	10.68	5.7	2.51	6.53	4.39
Merged-chr7-29126724-3	chr7	29126620	29126820	+	840.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1569.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	6.86	11.07	14.83	10.46	13.09	18.19	5.98	8.36	19.08	22.59	18.09	11.28
Merged-chr10-8948422-1	chr10	8948322	8948522	+	840.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62352.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.21	2.26	4.56	5.63	2.05	1.57	1.99	3.62	12.98	12.05	21.1	8.46
Merged-chr17-84128509-3	chr17	84128412	84128612	+	840.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	49852.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	10.5	9.56	11.41	15.69	13.09	23.2	17.27	25.77	16.52	9.04	15.58	7.83
Merged-chr15-59389399-3	chr15	59389318	59389518	+	840.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	15220.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	14.54	5.03	4.56	2.01	11.86	14.74	5.98	7.26	11.41	11.05	18.09	11.59
Merged-chr11-63908680-3	chr11	63908582	63908782	+	840.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	13602.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	18.17	10.31	14.26	12.87	5.73	5.33	6.64	5.16	11.41	20.08	16.58	10.96
Merged-chr7-19458241-3	chr7	19458159	19458359	+	840.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172279, intron 1 of 16)	CpG	235.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	11.71	6.04	2.85	12.47	13.09	11.29	8.64	8.97	10.03	17.57	8.54	10.34
Merged-chr5-64371792-3	chr5	64371698	64371898	+	840.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96144.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	10.5	8.05	19.97	12.07	13.5	8.47	9.97	21.22	11.41	13.56	13.06	10.96
Merged-chr13-5868986-2	chr13	5868876	5869076	+	840.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	7487.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	11.71	16.1	10.27	14.48	15.14	19.44	8.64	2.58	9.83	19.08	2.01	4.39
Merged-chr11-34737400-2	chr11	34737301	34737501	+	840.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 2 of 51)	L1M3|LINE|L1	46504.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.81	0.5	5.7	6.44	5.73	10.98	4.98	17.58	7.67	7.03	14.57	7.21
Merged-chr7-25740024-2	chr7	25739919	25740119	+	840.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178089, intron 7 of 7)	intron (NM_178089, intron 7 of 7)	14740.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	8.08	7.8	5.7	4.83	9.82	2.2	6.64	9.87	4.92	4.52	11.05	4.39
Merged-chr6-71444377-2	chr6	71444267	71444467	+	840.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3730.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	2.83	5.53	7.99	1.61	11.86	13.48	13.29	14.38	10.23	7.03	9.04	8.77
Merged-chr12-26465778-3	chr12	26465690	26465890	+	840.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3425.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	11.31	17.36	20.54	14.48	20.46	12.23	7.31	13.18	29.11	8.54	13.06	4.7
Merged-chr8-31097196-3	chr8	31097099	31097299	+	840.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357223)	TTS (NM_001357223)	5549.0	NM_001357223	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	10.9	10.56	16.54	7.24	15.55	13.48	5.31	17.72	20.26	19.08	14.07	15.66
Merged-chr11-61861175-3	chr11	61861071	61861271	+	840.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-6079.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	9.29	13.33	13.69	11.66	4.09	17.87	3.99	8.83	13.57	20.08	18.09	10.34
Merged-chr17-62516341-3	chr17	62516239	62516439	+	840.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	364978.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	7.27	11.07	17.68	8.85	12.27	28.85	20.26	16.32	14.36	17.57	11.56	11.28
Merged-chr19-9986324-3	chr19	9986217	9986417	+	840.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011913, exon 11 of 12)	exon (NM_011913, exon 11 of 12)	3671.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.08	7.55	9.13	11.66	9.82	10.66	9.97	9.08	10.82	14.06	6.03	4.39
Merged-chr6-66929854-3	chr6	66929744	66929944	+	840.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177556, intron 2 of 3)	Lx8|LINE|L1	32953.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	11.31	8.8	18.25	13.27	8.59	10.66	15.61	17.86	14.95	9.54	22.11	15.04
Merged-chr8-79029375-3	chr8	79029345	79029545	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	G-rich|Low_complexity|Low_complexity	1008.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	13.33	21.38	17.68	12.07	14.73	13.8	28.9	11.61	12.78	10.04	4.02	8.77
Merged-chr8-41138701-1	chr8	41138601	41138801	+	840.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4975.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	1.21	1.51	8.56	0.4	0.0	1.25	1.66	4.09	13.96	4.52	14.57	7.52
Merged-chr11-53444063-3	chr11	53443969	53444169	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	10783.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	12.52	15.85	8.56	4.42	9.82	25.4	5.31	3.5	18.88	16.07	19.6	10.34
Merged-chr14-32781656-3	chr14	32781546	32781746	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4317.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	8.88	5.03	13.12	13.27	14.73	9.09	3.32	8.97	10.82	12.55	18.59	5.64
Merged-chr7-122219610-3	chr7	122219494	122219694	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027363)	promoter-TSS (NM_027363)	98.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	17.36	4.28	12.55	17.29	9.0	9.09	11.96	22.46	6.88	9.54	12.56	10.02
Merged-chr2-20962003-1	chr2	20961903	20962103	+	840.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	5718.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	2.02	2.77	2.28	1.21	8.59	15.99	4.32	13.01	16.13	6.53	13.57	2.19
Merged-chr17-73951172-2	chr17	73951081	73951281	+	840.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-985.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.06	7.29	2.28	6.44	11.05	9.09	1.33	10.04	8.46	16.07	15.58	4.39
Merged-chr3-107101948-3	chr3	107101837	107102037	+	840.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008417, intron 1 of 2)	CpG	370.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	10.5	6.79	5.7	10.46	8.18	11.6	19.93	12.7	14.16	14.56	25.12	4.07
Merged-chr6-145793429-3	chr6	145793339	145793539	+	840.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-14944.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	14.94	11.57	17.11	16.09	14.32	11.92	3.99	20.69	8.85	11.05	26.63	17.23
Merged-chr5-123893738-3	chr5	123893632	123893832	+	840.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	-13543.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	18.17	14.09	13.69	10.05	22.5	31.67	14.95	10.77	19.08	19.08	14.57	8.14
Merged-chr9-111074122-3	chr9	111074014	111074214	+	840.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16596.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.48	7.04	15.97	18.9	2.86	15.68	4.98	12.08	16.13	13.05	21.1	6.89
Merged-chr17-35749462-2	chr17	35749358	35749558	+	840.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-22992.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	1.62	9.81	6.85	13.27	7.77	10.03	8.97	5.61	26.55	28.62	21.61	23.49
Merged-chr2-116922820-3	chr2	116922741	116922941	+	840.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22689.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.67	5.53	18.25	8.04	12.27	12.54	19.6	18.0	12.39	9.04	16.08	19.11
Merged-chr10-84571305-3	chr10	84571214	84571414	+	840.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5633.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	10.09	6.79	9.13	8.04	26.18	10.98	13.95	23.78	33.24	32.64	38.69	22.56
Merged-chr16-85139483-3	chr16	85139378	85139578	+	840.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34229.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	8.88	12.58	18.83	9.65	8.59	17.87	7.31	12.14	29.9	15.57	37.18	9.4
Merged-chr4-97929182-3	chr4	97929086	97929286	+	840.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	151560.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.67	12.58	15.97	9.25	4.5	11.29	14.95	11.72	12.19	3.01	16.58	4.39
Merged-chr11-78745708-3	chr11	78745610	78745810	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6019.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	7.27	10.56	6.28	10.46	15.55	12.23	6.98	10.43	12.39	15.57	20.6	10.96
Merged-chr13-73970720-3	chr13	73970629	73970829	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	6878.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	7.27	11.07	5.13	11.26	11.05	12.86	10.63	9.67	13.77	11.05	20.6	4.7
Merged-chr6-137560807-2	chr6	137560726	137560926	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	MamTip2|DNA|hAT-Tip100	10183.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.25	8.3	12.55	15.69	11.05	9.09	15.94	9.7	8.06	3.51	9.55	13.78
Merged-chr13-96431901-3	chr13	96431801	96432001	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	39259.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	15.75	11.82	22.82	12.07	10.64	17.56	4.65	14.41	20.06	13.56	16.58	10.65
Merged-chr2-130731433-3	chr2	130731336	130731536	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 27 of 36)	L2a|LINE|L2	-33917.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	8.48	7.55	10.27	3.22	25.77	26.97	11.96	5.86	18.29	12.05	26.63	10.02
Merged-chrX-140780420-2	chrX	140780319	140780519	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	33014.0	NM_031381	83555.0	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	1.21	11.32	7.99	10.86	16.36	12.54	8.3	18.22	3.15	2.01	3.52	2.19
Merged-chr19-53460553-1	chr19	53460453	53460653	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	4243.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	7.27	2.77	13.12	4.02	3.27	6.27	8.64	13.12	4.13	2.51	4.02	1.57
Merged-chr5-76176617-1	chr5	76176517	76176717	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-7263.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.81	2.26	7.42	8.04	2.45	6.9	7.64	7.35	2.16	3.51	12.06	2.51
Merged-chr5-72161294-1	chr5	72161194	72161394	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178599, intron 3 of 4)	intron (NM_178599, intron 3 of 4)	6895.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.81	2.52	5.7	5.63	14.32	7.84	10.63	18.7	4.33	5.02	5.53	0.94
Merged-chr17-79954646-1	chr17	79954546	79954746	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-58523.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	6.06	7.55	17.11	20.11	3.27	3.14	4.65	5.61	4.13	2.51	16.58	3.76
Merged-chr9-10324882-2	chr9	10324780	10324980	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	430449.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	6.06	1.51	4.56	5.63	5.32	10.03	4.98	10.99	8.65	15.06	22.61	5.95
Merged-chr17-28810318-1	chr17	28810218	28810418	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081315, intron 2 of 12)	intron (NM_001081315, intron 2 of 12)	9192.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	4.85	3.27	5.7	7.64	4.09	10.03	11.63	8.92	5.51	5.02	1.51	5.64
Merged-chr1-195037629-1	chr1	195037529	195037729	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029745)	promoter-TSS (NR_029745)	82.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	1.62	1.76	4.56	3.22	2.45	6.27	6.98	7.93	3.34	6.03	4.02	1.25
Merged-chr12-82257133-1	chr12	82257033	82257233	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-54216.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	2.83	5.28	5.7	9.25	14.32	5.96	6.64	7.91	3.93	8.03	9.55	4.39
Merged-chrX-159607129-1	chrX	159607029	159607229	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-20143.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.25	12.07	5.7	3.22	11.86	4.08	7.31	5.83	9.83	7.53	7.54	1.88
Merged-chr6-134632406-1	chr6	134632306	134632506	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026345)	promoter-TSS (NM_026345)	82.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.44	4.78	6.85	3.22	6.95	6.59	7.64	10.77	3.74	7.53	5.02	11.9
Merged-chr12-35050696-1	chr12	35050596	35050796	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3507.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	8.08	5.03	1.14	8.85	3.27	7.84	4.98	9.81	6.29	3.51	7.54	4.7
Merged-chr5-8863701-4	chr5	8863554	8863754	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011075, intron 26 of 27)	intron (NM_011075, intron 26 of 27)	-30067.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	8.88	1.01	1.14	1.61	6.14	4.39	5.31	9.25	8.46	6.53	6.53	4.39
Merged-chr2-84479271-3	chr2	84479167	84479367	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR18-int|LTR|ERVK	-2492.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	13.73	10.82	11.98	10.05	13.09	10.35	3.65	10.54	16.52	15.06	13.57	10.96
Merged-chr8-71495150-3	chr8	71495042	71495242	+	840.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7039.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	6.86	15.34	7.99	10.86	6.55	16.62	7.31	8.94	21.05	22.59	21.61	18.8
Merged-chr13-81222044-3	chr13	81221963	81222163	+	840.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	L1_Mur3|LINE|L1	257989.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	16.56	9.06	8.56	9.25	25.77	13.17	12.29	20.05	15.54	11.55	20.1	5.64
Merged-chr16-14291458-3	chr16	14291359	14291559	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161775)	promoter-TSS (NM_001161775)	-51.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	8.08	4.78	10.84	8.45	9.0	16.31	4.32	13.71	17.31	16.57	25.63	15.04
Merged-chr4-105253824-3	chr4	105253734	105253934	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96487.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	12.52	19.12	10.84	13.27	9.41	12.86	7.97	9.06	18.29	9.54	28.14	8.46
Merged-chr4-150473744-3	chr4	150473570	150473770	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	178504.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	8.08	4.53	10.27	6.03	14.32	12.23	8.97	17.05	12.59	6.03	2.51	3.13
Merged-chr18-20741070-3	chr18	20740958	20741158	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	5346.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	12.92	5.53	11.98	22.93	21.27	16.62	25.24	30.03	11.8	12.55	18.09	9.71
Merged-chr15-99416697-3	chr15	99416588	99416788	+	840.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23469.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	23.82	12.07	23.39	9.65	14.73	15.68	9.63	9.7	28.13	16.07	13.57	9.4
Merged-chr2-72390121-3	chr2	72390028	72390228	+	840.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178084)	TTS (NM_178084)	-86091.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	12.11	5.79	7.42	9.65	13.91	21.95	8.3	17.89	20.65	13.05	21.61	13.47
Merged-chr1-164440391-2	chr1	164440304	164440504	+	840.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009721, intron 4 of 5)	intron (NM_009721, intron 4 of 5)	17951.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	7.67	6.29	8.56	21.72	7.36	4.39	11.63	26.58	6.88	11.55	20.6	6.89
Merged-chr2-59402025-3	chr2	59401906	59402106	+	840.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15324.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	14.13	6.54	11.98	8.85	17.18	13.8	14.28	22.49	19.87	10.04	16.08	14.72
Merged-chr11-80176911-1	chr11	80176811	80177011	+	840.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172133, intron 9 of 10)	intron (NM_172133, intron 9 of 10)	-6961.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	9.69	4.28	1.14	5.23	15.14	9.09	7.31	8.38	3.54	13.05	11.56	6.58
Merged-chr2-83673300-2	chr2	83673207	83673407	+	840.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28729.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	6.06	0.75	12.55	6.03	19.64	27.59	12.62	27.42	9.05	14.56	15.58	5.64
Merged-chr11-53735777-3	chr11	53735679	53735879	+	840.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14985.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	17.77	4.78	3.42	6.84	9.41	16.62	6.64	8.89	19.47	16.07	18.09	14.1
Merged-chr17-50880213-3	chr17	50880108	50880308	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 13 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	181527.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	10.9	5.03	21.11	18.9	11.86	11.6	14.62	14.27	26.36	13.05	14.07	14.1
Merged-chr4-6416194-3	chr4	6416085	6416285	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38086.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	8.48	6.29	3.99	8.85	27.0	14.11	16.28	23.05	21.05	15.06	21.1	12.84
Merged-chr2-145884973-3	chr2	145884870	145885070	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18271.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	7.67	5.79	19.4	11.26	13.91	25.4	18.6	32.16	11.6	16.07	15.07	13.16
Merged-chr1-152604404-1	chr1	152604304	152604504	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	20813.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	12.92	5.53	4.56	1.61	12.68	15.99	9.63	10.01	11.01	2.51	7.54	4.07
Merged-chr4-19879879-1	chr4	19879779	19879979	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175406, intron 7 of 7)	intron (NM_175406, intron 7 of 7)	42687.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.23	1.51	5.13	8.85	8.18	5.64	11.96	7.88	6.69	3.51	6.03	5.01
Merged-chr5-140331874-3	chr5	140331786	140331986	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	12.0	NM_026510	68017.0	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	11.31	8.8	12.55	3.22	13.09	14.11	2.33	11.38	13.57	12.05	14.57	5.01
Merged-chr7-83853243-1	chr7	83853143	83853343	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31098.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	6.86	5.53	7.42	5.23	12.68	7.84	25.58	29.3	5.7	10.04	9.04	15.04
Merged-chrX-153665102-3	chrX	153665002	153665202	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31178.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	7.67	8.8	13.12	14.88	20.86	17.25	19.27	32.13	11.41	11.55	19.6	6.27
Merged-chr11-35290405-1	chr11	35290305	35290505	+	840.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	168949.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	1.62	1.26	2.28	0.0	1.64	2.51	0.66	2.05	39.34	25.11	31.66	9.71
Merged-chr11-31818250-1	chr11	31818150	31818350	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_102310, exon 4 of 4)	non-coding (NR_102310, exon 4 of 4)	6297.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.0	2.01	0.0	1.21	7.77	10.66	4.65	16.35	1.57	0.5	0.0	2.19
Merged-chr16-42910207-3	chr16	42910106	42910306	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	1864.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	10.5	8.8	19.97	22.93	15.96	9.09	8.3	14.94	16.52	11.55	10.05	13.47
Merged-chr2-103672772-3	chr2	103672652	103672852	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88518.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	6.06	10.82	10.84	9.25	10.23	8.47	8.64	6.98	9.44	9.04	8.04	5.01
Merged-chr8-107403189-3	chr8	107403085	107403285	+	840.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008706)	promoter-TSS (NM_008706)	20.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	13.73	8.8	4.56	16.49	8.18	13.48	13.95	15.56	10.62	12.05	19.09	11.28
Merged-chr5-92106473-3	chr5	92106360	92106560	+	840.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-22716.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.46	7.04	9.13	11.26	16.77	10.66	7.97	18.48	18.88	11.55	20.1	15.35
Merged-chr1-131511283-3	chr1	131511159	131511359	+	840.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	16102.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	10.9	10.82	3.99	11.66	20.86	15.68	8.97	16.68	21.64	9.04	14.57	16.92
Merged-chr3-84229105-3	chr3	84229001	84229201	+	840.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-8224.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	18.98	12.07	14.26	14.88	10.64	22.58	13.95	10.32	9.83	9.04	17.08	14.41
Merged-chr2-91280142-2	chr2	91280035	91280235	+	840.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	15020.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	10.9	15.34	12.55	7.64	8.18	22.89	6.64	2.61	13.96	20.59	10.05	3.45
Merged-chr13-117224533-1	chr13	117224433	117224633	+	840.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	3960.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	8.88	5.79	2.28	5.23	13.09	3.76	10.63	7.82	4.13	2.51	2.01	2.19
Merged-chr9-72469036-2	chr9	72468948	72469148	+	840.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	22911.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	8.08	6.79	21.11	14.88	9.0	6.59	8.64	7.12	4.52	11.55	9.55	3.76
Merged-chr16-92412557-3	chr16	92412447	92412647	+	840.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	RLTR28|LTR|ERVL	-12469.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	10.09	10.31	14.83	15.28	15.55	11.6	16.61	13.21	12.39	13.56	10.55	8.46
Merged-chr10-127520614-3	chr10	127520493	127520693	+	840.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028230, intron 2 of 11)	intron (NM_028230, intron 2 of 11)	1851.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	7.27	11.82	8.56	12.47	12.27	11.6	7.31	6.62	21.05	2.01	12.06	5.01
Merged-chr10-80960985-3	chr10	80960871	80961071	+	840.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	30880.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	11.31	10.06	2.28	3.22	5.32	11.6	8.97	11.44	10.82	11.55	15.07	10.65
Merged-chr5-88543087-2	chr5	88542970	88543170	+	840.216675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-11392.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	6.46	4.02	5.7	3.22	11.05	10.03	5.65	10.51	9.64	13.05	21.1	11.59
Merged-chr12-71309824-2	chr12	71309732	71309932	+	840.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021532)	promoter-TSS (NM_021532)	-52.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	16.15	9.31	11.41	7.64	9.0	12.23	12.62	23.16	9.24	7.03	8.04	9.71
Merged-chr2-79611309-3	chr2	79611194	79611394	+	840.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24131.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.63	5.53	7.99	5.63	22.5	20.7	23.58	20.58	5.7	12.05	16.08	9.08
Merged-chr2-110018450-3	chr2	110018349	110018549	+	840.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149736, intron 1 of 6)	intron (NR_149736, intron 1 of 6)	632.0	NR_149736	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	18.98	7.04	10.27	18.1	14.73	13.8	6.64	10.43	13.57	14.56	9.55	13.78
Merged-chr18-9865865-3	chr18	9865768	9865968	+	840.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130449, intron 7 of 9)	intron (NM_130449, intron 7 of 9)	-92312.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	12.11	9.81	3.99	12.47	12.68	14.42	5.65	17.1	9.83	18.08	13.57	9.71
Merged-chr3-87356811-3	chr3	87356692	87356892	+	840.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1089.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	10.09	8.8	8.56	5.23	5.73	5.96	6.64	7.4	31.27	24.1	36.18	25.69
Merged-chr2-181238968-2	chr2	181238835	181239035	+	840.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183162, intron 4 of 18)	L1_Mus3|LINE|L1	3092.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.4	0.5	0.0	0.4	2.45	12.23	3.65	2.16	17.7	8.03	12.06	2.19
Merged-chr15-35326698-2	chr15	35326544	35326744	+	840.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045280, intron 1 of 2)	CpG	1891.0	NR_045280	100126269.0	Mm.247402	NR_045280	ENSMUSG00000115453	BC048602	-	cDNA sequence BC048602	ncRNA	7.27	7.04	3.42	8.85	9.41	7.21	7.97	9.84	10.42	7.03	5.02	9.4
Merged-chr2-181282369-2	chr2	181282278	181282478	+	840.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	5588.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.25	13.58	4.56	4.83	11.86	20.07	17.61	6.14	19.87	31.63	14.07	5.95
Merged-chr11-46128023-3	chr11	46127922	46128122	+	840.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001311209, exon 1 of 12)	5' UTR (NM_001311209, exon 1 of 12)	118.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	6.46	7.55	13.69	9.65	7.77	7.84	6.98	10.09	22.82	14.06	33.16	22.24
Merged-chr19-9898790-4	chr19	9898641	9898841	+	840.1142580000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	792.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	8.48	5.79	21.68	14.48	18.0	11.92	10.96	17.27	6.29	7.53	7.03	14.1
Merged-chr2-32350639-3	chr2	32350544	32350744	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	2685.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	27.86	26.91	18.25	8.85	15.55	13.17	7.97	6.73	34.03	13.05	13.57	4.39
Merged-chr9-96713332-3	chr9	96713238	96713438	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	6107.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.25	8.3	18.25	14.48	11.05	21.95	1.99	13.88	21.64	14.56	20.6	7.21
Merged-chr11-75171738-3	chr11	75171642	75171842	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1487.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	20.59	6.54	6.85	2.01	14.32	20.07	8.97	9.59	25.96	20.08	21.1	8.77
Merged-chr9-116063256-3	chr9	116063172	116063372	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	ORR1E|LTR|ERVL-MaLR	112091.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	9.69	8.55	15.97	22.93	6.95	12.86	20.93	23.97	14.55	6.53	11.05	10.34
Merged-chr15-86205505-2	chr15	86205391	86205591	+	840.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8968.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.86	6.79	3.42	7.24	4.91	15.99	8.97	11.41	18.1	15.06	18.59	8.77
Merged-chr9-122337595-2	chr9	122337498	122337698	+	840.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14018.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	15.75	10.31	6.85	9.65	14.73	12.23	7.31	7.37	5.7	10.54	6.53	10.34
Merged-chr11-103030427-2	chr11	103030333	103030533	+	840.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	1890.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	13.33	4.28	6.85	6.84	11.86	24.15	4.65	7.85	18.1	16.57	9.55	6.27
Merged-chr13-111686886-3	chr13	111686793	111686993	+	840.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172593, intron 1 of 12)	CpG	715.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	16.15	10.56	14.83	15.69	14.73	7.21	9.3	8.64	11.41	10.54	10.55	9.71
Merged-chr1-9968118-2	chr1	9968004	9968204	+	840.0750119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285425)	promoter-TSS (NM_001285425)	-619.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	11.31	10.82	15.4	30.97	5.73	13.17	13.95	9.28	6.88	3.51	8.04	9.08
Merged-chr17-24212447-3	chr17	24212355	24212555	+	840.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3068.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	8.88	5.53	10.84	10.05	12.68	18.81	4.65	16.74	23.41	19.58	20.6	7.52
Merged-chr1-171682089-3	chr1	171682045	171682245	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360767, exon 1 of 3)	exon (NM_001360767, exon 1 of 3)	153.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	5.25	9.81	2.28	8.04	10.23	15.37	8.3	11.89	12.59	8.54	6.53	10.96
Merged-chr11-116493979-3	chr11	116493879	116494079	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3633.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	23.02	9.31	4.56	8.45	15.55	16.62	8.64	11.97	38.94	26.11	27.64	14.72
Merged-chr4-6209741-3	chr4	6209625	6209825	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026534, intron 6 of 7)	L3|LINE|CR1	18620.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	10.5	7.55	7.99	5.23	19.23	10.66	8.64	12.81	22.03	27.11	25.12	19.11
Merged-chr19-17218353-3	chr19	17218247	17218447	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	121158.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	9.69	12.83	13.69	8.85	5.73	17.87	4.98	8.5	30.29	31.13	40.7	10.96
Merged-chr11-87662562-3	chr11	87662456	87662656	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172448)	promoter-TSS (NM_172448)	-531.0	NM_172448	207742.0	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	15.34	8.55	7.99	13.67	4.91	18.19	3.65	13.49	12.98	7.53	20.6	6.27
Merged-chr3-57749051-3	chr3	57748908	57749108	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357080, intron 2 of 10)	intron (NM_001357080, intron 2 of 10)	12951.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	7.27	7.29	12.55	13.67	8.18	15.05	11.63	14.89	15.93	14.06	14.57	7.52
Merged-chr6-135417599-1	chr6	135417499	135417699	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50106.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.0	0.75	3.42	6.03	1.64	7.84	2.33	8.24	0.2	0.0	0.5	0.94
Merged-chr13-116985095-2	chr13	116984989	116985189	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	RMER16|LTR|ERVK	40427.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	32.71	19.12	39.36	29.76	3.68	3.14	6.64	5.58	5.51	6.03	8.04	7.52
Merged-chr6-72375355-2	chr6	72375233	72375433	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	MIR|SINE|MIR	5135.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.85	2.26	9.7	4.42	17.18	8.78	3.65	9.42	10.82	7.03	9.55	6.58
Merged-chr6-43297471-1	chr6	43297371	43297571	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12083.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	2.42	7.29	5.7	6.03	3.27	5.64	8.64	9.56	4.13	2.01	2.51	5.64
Merged-chr14-54742573-2	chr14	54742466	54742666	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-30392.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	9.29	10.06	21.68	13.27	18.0	6.27	32.88	54.03	4.33	3.51	3.52	5.33
Merged-chr17-26572076-1	chr17	26571976	26572176	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	10564.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	2.01	6.28	3.22	8.18	4.7	1.99	8.13	4.72	1.51	4.02	7.83
Merged-chr10-53439085-2	chr10	53438983	53439183	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	29201.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.4	1.76	4.56	4.02	11.45	11.92	20.26	13.26	5.7	12.55	17.59	10.02
Merged-chr17-12315490-1	chr17	12315390	12315590	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	3170.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	1.01	0.0	2.01	3.27	8.15	3.65	7.6	4.52	1.51	4.52	5.01
Merged-chr10-52423300-1	chr10	52423200	52423400	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	B3A|SINE|B2	5753.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	7.67	3.27	2.28	2.01	5.32	7.21	3.65	4.46	15.14	4.52	14.07	7.21
Merged-chr1-125433186-1	chr1	125433086	125433286	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	2541.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	1.62	3.52	1.14	0.4	2.86	5.33	1.33	0.98	6.29	3.51	3.52	4.39
Merged-chr11-49855418-1	chr11	49855318	49855518	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 2 of 11)	intron (NM_016961, intron 2 of 11)	8667.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.81	8.55	1.14	1.61	2.05	2.82	0.0	0.11	13.77	5.52	12.56	2.19
Merged-chr19-53855567-1	chr19	53855467	53855667	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-36664.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.04	3.27	1.71	4.42	3.27	9.41	6.31	9.06	0.98	7.53	9.55	3.76
Merged-chr13-93901014-1	chr13	93900914	93901114	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110237.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	5.65	6.54	1.71	7.24	13.5	6.59	4.98	9.34	2.36	7.53	4.02	1.57
Merged-chr17-31519578-1	chr17	31519478	31519678	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-537.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	11.71	17.1	10.84	9.65	4.5	7.21	4.32	3.9	5.7	4.52	12.06	11.28
Merged-chr8-120536086-3	chr8	120536001	120536201	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151732)	TTS (NR_151732)	244.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.86	12.58	17.68	10.05	13.91	5.96	12.95	20.52	9.64	13.05	11.05	15.04
Merged-chr6-135977113-2	chr6	135977012	135977212	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	196399.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	4.85	1.51	4.56	1.61	0.82	6.27	4.65	7.99	38.94	33.14	42.71	29.13
Merged-chr1-88268935-1	chr1	88268835	88269035	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 3 of 4)	intron (NM_172505, intron 3 of 4)	473.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	2.42	1.76	1.14	0.4	0.82	1.88	1.33	3.48	3.54	1.0	4.52	2.51
Merged-chr14-27338184-1	chr14	27338084	27338284	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	2147.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	14.94	10.06	2.28	3.22	9.0	5.02	2.99	5.38	11.01	9.04	4.52	5.01
Merged-chr1-151511034-1	chr1	151510934	151511134	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-10043.0	NM_001360847	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	2.42	1.76	1.14	4.02	5.73	2.82	7.64	7.49	4.92	1.0	3.01	2.51
Merged-chr13-89892333-1	chr13	89892233	89892433	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	L1_Mur2|LINE|L1	-149821.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.44	3.02	2.28	2.41	10.23	5.96	16.61	15.08	8.85	15.06	8.04	3.76
Merged-chr8-106004873-1	chr8	106004773	106004973	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-6605.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	1.62	2.01	0.0	4.02	9.82	8.78	8.97	2.61	0.79	3.01	2.01	3.45
Merged-chr9-89674403-1	chr9	89674303	89674503	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30640.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	3.63	8.55	5.13	4.83	5.32	10.35	3.32	6.64	5.31	5.02	11.56	6.58
Merged-chr1-174117153-1	chr1	174117053	174117253	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001005520)	TTS (NM_001005520)	861.0	NM_001005520	404222.0	Mm.457873	NM_001005520	ENSMUSG00000046486	Olfr231	MOR105-4|Olfr231-ps1|Olfr244|Olfr244-ps1|Olfr425|Olfr425-ps1	olfactory receptor 231	protein-coding	7.27	6.54	12.55	24.13	0.82	0.0	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120513530-1	chr5	120513430	120513630	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	L2a|LINE|L2	2338.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	10.5	6.04	9.7	8.04	6.95	18.81	9.63	10.85	17.7	14.56	14.07	6.27
Merged-chr14-13917846-1	chr14	13917746	13917946	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43467.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	7.27	2.52	1.71	2.01	4.09	9.72	5.31	7.51	9.64	6.03	7.03	4.7
Merged-chr17-26298463-1	chr17	26298363	26298563	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR10D|LTR|ERVK	45553.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	14.54	9.06	19.97	13.67	0.0	0.63	0.33	0.79	4.13	1.0	2.01	0.63
Merged-chr15-27467028-1	chr15	27466928	27467128	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020332, exon 1 of 12)	exon (NM_020332, exon 1 of 12)	351.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	4.04	5.03	7.42	2.41	11.05	6.27	11.63	10.23	3.54	3.01	6.53	1.88
Merged-chr13-119805851-3	chr13	119805774	119805974	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-14752.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	14.13	6.79	5.13	4.83	23.32	15.99	23.58	17.19	12.98	15.57	26.63	6.89
Merged-chr15-72929334-1	chr15	72929234	72929434	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 14 of 21)	intron (NM_029640, intron 14 of 21)	-119010.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	1.62	0.5	2.28	3.22	2.45	8.78	2.66	5.8	2.56	0.5	2.51	2.19
Merged-chr9-47581705-1	chr9	47581605	47581805	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	51353.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.86	6.04	7.99	10.46	11.86	8.78	3.99	9.84	5.9	10.04	7.03	6.89
Merged-chr4-155094220-4	chr4	155094077	155094277	+	839.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	7573.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	2.83	3.02	0.57	2.41	4.5	2.2	1.66	4.57	5.9	3.01	3.01	5.95
Merged-chrX-159647743-3	chrX	159647611	159647811	+	839.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	20439.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	8.88	20.37	9.13	24.53	19.64	23.52	16.94	26.8	21.05	11.55	12.56	11.9
Merged-chr15-97212745-3	chr15	97212645	97212845	+	839.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34362.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	5.25	7.04	18.83	8.04	13.91	13.17	4.65	8.05	13.37	8.03	12.56	2.19
Merged-chr15-78303816-3	chr15	78303713	78303913	+	839.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287389, intron 1 of 11)	URR1A|DNA|hAT-Charlie	1908.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	9.69	5.03	11.98	9.25	4.91	7.84	17.94	13.46	7.67	1.51	7.54	5.01
Merged-chr12-73537893-2	chr12	73537805	73538005	+	839.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8490.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	2.42	6.29	2.85	5.23	9.0	14.74	6.98	12.36	14.16	12.55	12.06	5.01
Merged-chr7-122258680-3	chr7	122258579	122258779	+	839.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30446.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	13.33	6.29	9.7	9.25	15.96	19.13	16.94	26.97	21.44	28.12	14.07	20.36
Merged-chr3-105850272-2	chr3	105850157	105850357	+	839.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-20601.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	10.5	8.3	9.13	8.04	1.64	1.25	2.33	3.22	20.65	6.03	17.59	7.83
Merged-chr2-102999011-2	chr2	102998910	102999110	+	839.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74503.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.25	5.79	5.7	4.02	22.5	52.05	9.97	4.85	13.77	22.59	14.57	6.58
Merged-chr1-186182792-2	chr1	186182684	186182884	+	839.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65474.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	15.34	9.06	9.13	10.46	13.91	11.6	4.32	12.67	2.36	1.0	1.0	1.57
Merged-chr15-9572060-3	chr15	9571974	9572174	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42198.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	3.23	3.77	13.69	13.67	9.0	3.76	7.64	12.9	7.08	6.03	10.05	9.4
Merged-chr14-61498392-3	chr14	61498310	61498510	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	5722.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	8.88	10.06	9.13	9.65	22.5	16.93	11.63	13.12	12.0	13.05	19.09	18.17
Merged-chr9-90062106-3	chr9	90061974	90062174	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007801, intron 3 of 11)	intron (NM_007801, intron 3 of 11)	7807.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	14.94	13.33	35.37	21.32	11.86	7.21	6.98	24.03	15.54	8.03	10.05	5.95
Merged-chr17-63873664-3	chr17	63873572	63873772	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-4394.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	12.52	11.07	6.28	9.65	20.05	14.74	14.28	19.35	24.0	5.02	12.06	10.65
Merged-chrX-7878162-3	chrX	7878076	7878276	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138606)	promoter-TSS (NM_138606)	-130.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	17.77	5.28	15.97	9.65	15.55	17.87	8.3	25.29	13.96	18.08	10.55	10.34
Merged-chr14-16248719-3	chr14	16248610	16248810	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	466.0	NM_001359882	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	10.5	9.31	6.85	8.04	13.5	17.25	4.32	11.24	19.47	25.61	15.07	9.08
Merged-chr5-145117085-3	chr5	145117015	145117215	+	839.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2859.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	10.09	12.58	11.98	9.65	6.55	16.31	6.98	5.64	16.13	8.03	20.6	8.77
Merged-chr8-111233972-3	chr8	111233866	111234066	+	839.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	25236.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	14.94	7.55	17.11	14.88	9.41	7.84	8.64	18.25	19.87	22.59	12.56	18.8
Merged-chr10-8837857-3	chr10	8837750	8837950	+	839.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	48220.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	12.11	13.08	9.7	15.28	11.45	16.62	12.95	15.0	13.37	6.03	12.06	13.47
Merged-chr5-21113755-3	chr5	21113646	21113846	+	839.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57835.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	6.86	3.27	6.28	6.84	4.91	4.7	11.29	6.7	6.49	7.03	8.04	7.83
Merged-chr9-114648672-2	chr9	114648566	114648766	+	839.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8466.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	5.25	5.28	3.42	7.24	4.5	7.21	6.31	6.03	20.06	21.09	9.04	14.72
Merged-chr9-21602151-3	chr9	21602069	21602269	+	839.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6160.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	13.33	8.3	11.98	8.04	13.09	14.42	8.3	12.59	24.78	10.54	21.61	11.28
Merged-chr8-10911201-3	chr8	10911079	10911279	+	839.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11257.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	8.08	7.29	10.84	17.7	18.82	23.52	13.29	18.64	11.8	8.54	20.1	4.39
Merged-chrX-9128395-3	chrX	9128372	9128572	+	839.746033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23910.0	NM_001270700	75775.0	Mm.50374	NM_001270700	ENSMUSG00000045797	4930402K13Rik	-	RIKEN cDNA 4930402K13 gene	protein-coding	3.23	3.02	2.28	10.86	8.18	5.96	11.96	5.83	6.1	4.52	10.55	11.28
Merged-chr12-44933182-3	chr12	44933082	44933282	+	839.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	141301.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	10.9	4.02	4.56	8.04	13.91	18.19	14.62	21.2	22.62	14.06	22.61	10.34
Merged-chrX-166945584-3	chrX	166945497	166945697	+	839.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124773.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	4.85	7.04	21.11	9.65	4.09	18.5	13.29	10.35	17.11	12.55	20.6	9.71
Merged-chr12-11214905-2	chr12	11214797	11214997	+	839.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5949.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	5.65	9.31	23.96	11.26	12.27	15.99	22.92	36.2	2.75	1.51	3.01	0.94
Merged-chr17-5941022-3	chr17	5940901	5941101	+	839.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-279.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	8.08	11.82	15.97	11.66	10.23	6.59	6.64	5.16	9.24	7.03	11.05	9.4
Merged-chr16-75886486-3	chr16	75886395	75886595	+	839.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22771.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	20.59	11.07	25.1	10.05	9.0	18.5	8.97	11.55	12.59	18.58	21.1	7.83
Merged-chr19-9987530-5	chr19	9987419	9987619	+	839.679993	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	4873.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.06	7.04	7.99	3.22	15.55	27.91	14.95	6.2	11.41	19.08	6.03	7.21
Merged-chr15-67087580-1	chr15	67087480	67087680	+	839.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	89302.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.62	4.02	11.98	3.62	11.86	3.76	5.98	5.83	3.15	2.01	0.0	0.63
Merged-chr9-47589994-3	chr9	47589857	47590057	+	839.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	MIRb|SINE|MIR	59605.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	9.69	11.82	13.69	8.85	21.27	22.26	10.3	23.78	13.57	12.05	6.53	10.96
Merged-chr13-54295905-3	chr13	54295867	54296067	+	839.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75382.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	5.25	6.79	16.54	4.42	6.55	5.64	3.32	8.27	15.54	7.03	24.12	10.96
Merged-chr12-3658054-1	chr12	3657954	3658154	+	839.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	85070.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	4.04	5.03	9.13	2.01	6.95	6.59	9.3	12.48	10.42	6.03	9.04	2.82
Merged-chr19-25002366-2	chr19	25002263	25002463	+	839.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	MTE2a|LTR|ERVL-MaLR	2834.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	9.29	9.56	12.55	17.7	23.73	17.56	27.9	28.43	5.31	3.01	7.03	3.13
Merged-chr3-84348269-2	chr3	84348151	84348351	+	839.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31670.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.81	0.0	1.71	2.41	11.05	11.29	6.31	12.95	6.29	5.52	13.57	11.59
Merged-chr3-58417105-2	chr3	58417040	58417240	+	839.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	2420.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	5.65	8.8	8.56	8.04	8.18	8.78	9.63	10.99	10.03	16.07	7.54	8.14
Merged-chr13-107114087-2	chr13	107113981	107114181	+	839.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	91511.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	1.21	9.56	14.26	4.42	7.36	4.7	2.66	7.01	6.49	12.05	9.04	6.89
Merged-chr7-56019661-3	chr7	56019542	56019742	+	839.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153578)	promoter-TSS (NM_153578)	-69.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	9.29	7.04	10.27	10.86	15.55	16.62	17.94	13.65	12.78	9.54	9.04	6.27
Merged-chr4-120826940-3	chr4	120826828	120827028	+	839.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048168, intron 1 of 9)	intron (NM_001048168, intron 1 of 9)	-1187.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	8.08	5.28	1.14	16.09	15.14	10.35	10.96	14.55	14.16	24.6	33.67	9.08
Merged-chr16-8686328-3	chr16	8686245	8686445	+	839.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5575.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	10.5	10.82	13.12	11.26	13.5	11.29	7.64	10.54	13.37	24.1	8.54	10.96
Merged-chr3-152265946-2	chr3	152265834	152266034	+	839.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357206)	promoter-TSS (NM_001357206)	-139.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	4.85	6.79	3.99	14.08	8.18	9.72	14.62	11.24	3.93	3.01	6.03	1.88
Merged-chr12-102690402-3	chr12	102690305	102690505	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-5385.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	5.65	6.04	13.12	11.26	18.41	10.66	10.63	17.1	8.85	12.05	15.58	15.35
Merged-chr9-21593576-3	chr9	21593498	21593698	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-767.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	10.5	11.57	13.69	2.01	13.09	15.68	10.3	8.94	24.39	11.55	10.55	3.76
Merged-chr11-80156922-3	chr11	80156830	80157030	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	8.48	8.3	19.4	4.42	18.82	21.95	19.6	19.04	28.52	29.12	19.09	18.48
Merged-chr1-39851335-3	chr1	39851241	39851441	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4011.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	20.19	12.83	21.68	13.27	15.55	26.65	7.31	2.97	27.54	21.09	20.6	10.02
Merged-chr1-20939259-3	chr1	20939150	20939350	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028829, exon 3 of 3)	3' UTR (NM_028829, exon 3 of 3)	-12376.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	11.71	20.12	12.55	12.07	14.32	24.77	7.97	14.64	12.78	9.04	11.05	10.96
Merged-chr5-107868500-3	chr5	107868397	107868597	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	CpG	6610.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	11.31	14.09	26.81	8.04	13.09	11.29	14.95	8.66	7.08	9.54	10.05	7.21
Merged-chr9-105122980-3	chr9	105122874	105123074	+	839.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8831.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	8.88	6.04	5.13	10.86	20.86	14.11	5.98	10.35	39.14	33.14	40.2	13.47
Merged-chr11-17000569-3	chr11	17000458	17000658	+	839.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	8160.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.46	9.06	11.98	8.04	9.41	12.54	4.32	17.8	24.0	8.03	14.57	13.16
Merged-chr4-133202369-2	chr4	133202287	133202487	+	839.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6732.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	8.88	8.8	2.85	4.02	4.09	4.08	5.65	2.05	3.15	8.03	4.02	3.13
Merged-chr1-162587734-1	chr1	162587634	162587834	+	839.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356527, intron 4 of 7)	intron (NM_001356527, intron 4 of 7)	16906.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	1.62	4.28	2.28	4.42	2.05	2.51	3.32	10.09	13.18	4.02	17.08	6.27
Merged-chr4-59033576-1	chr4	59033476	59033676	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	1.62	3.27	9.7	6.03	8.59	6.59	3.32	7.65	0.39	0.0	0.0	0.94
Merged-chr9-45241595-1	chr9	45241495	45241695	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198971, intron 2 of 4)	intron (NM_001198971, intron 2 of 4)	25112.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	4.44	5.53	3.42	6.44	7.77	4.08	6.98	6.93	4.13	9.54	11.05	1.57
Merged-chr12-85427950-1	chr12	85427850	85428050	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-45940.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	1.62	2.52	8.56	3.62	5.32	1.25	4.65	1.57	4.72	6.03	5.53	5.01
Merged-chr16-24930936-2	chr16	24930817	24931017	+	839.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-128722.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.04	4.02	6.85	4.83	6.14	3.76	4.98	7.26	2.36	3.51	5.53	5.95
Merged-chr5-135614812-2	chr5	135614696	135614896	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17858.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	14.13	5.03	6.85	2.82	30.27	17.25	22.59	28.65	14.55	11.55	11.56	7.52
Merged-chr9-104710504-1	chr9	104710404	104710604	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	141021.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.65	2.77	3.99	6.44	8.18	3.14	13.62	23.69	0.79	0.0	0.0	0.0
Merged-chr5-125381540-1	chr5	125381440	125381640	+	839.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	8477.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	12.11	11.32	10.27	7.24	2.45	16.93	0.66	0.79	3.74	11.55	0.5	5.64
Merged-chr15-51449870-3	chr15	51449757	51449957	+	839.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-54247.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	10.9	11.57	15.4	27.75	9.82	8.15	15.94	23.5	9.44	9.04	26.63	14.41
Merged-chr5-134234386-3	chr5	134234294	134234494	+	839.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4769.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	8.48	12.07	9.7	5.63	19.23	31.67	14.28	10.74	13.37	10.04	14.07	5.33
Merged-chr8-120796404-3	chr8	120796318	120796518	+	839.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57779.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.44	12.07	5.7	7.24	11.45	10.66	10.96	9.31	14.36	7.53	16.58	10.34
Merged-chr3-20033836-2	chr3	20033751	20033951	+	839.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 1 of 16)	intron (NM_080634, intron 1 of 16)	1459.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	4.04	2.77	3.42	4.83	9.0	9.41	6.64	10.82	8.46	2.01	6.03	4.07
Merged-chr2-60822340-2	chr2	60822229	60822429	+	839.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59109.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	10.5	10.82	10.84	7.64	20.05	20.38	15.94	20.19	13.96	10.04	21.1	9.4
Merged-chr1-53856883-1	chr1	53856783	53856983	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	7459.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.04	3.27	8.56	10.86	11.45	8.47	8.97	14.89	5.51	4.02	7.03	4.07
Merged-chr7-91598720-1	chr7	91598620	91598820	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	RMER6A|LTR|ERVK	-463674.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	4.44	3.02	0.0	11.66	4.91	8.78	5.98	10.07	0.39	3.51	2.01	0.0
Merged-chr19-16047161-3	chr19	16047045	16047245	+	839.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62070.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	10.5	12.32	8.56	13.27	24.55	9.09	19.93	19.32	8.06	8.54	8.54	5.95
Merged-chr13-31225619-1	chr13	31225519	31225719	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045957, intron 1 of 2)	L1MA5A|LINE|L1	15467.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	7.27	4.02	14.26	3.22	7.77	12.23	5.65	11.05	0.79	1.51	6.03	1.88
Merged-chr8-86891723-1	chr8	86891623	86891823	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-6465.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.25	5.53	2.85	13.27	13.09	12.23	9.3	4.35	5.31	3.51	7.03	4.39
Merged-chr19-21377062-3	chr19	21376958	21377158	+	839.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95603.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	15.75	9.06	10.27	8.04	16.77	47.35	43.51	35.22	14.75	16.57	20.6	5.33
Merged-chr2-35232862-3	chr2	35232791	35232991	+	839.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23468.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.85	10.82	7.42	10.46	10.23	10.03	11.96	9.9	10.03	8.03	11.56	8.14
Merged-chr10-8358400-3	chr10	8358292	8358492	+	839.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	160433.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.06	7.8	6.85	8.04	6.55	20.7	10.96	15.62	10.23	32.13	24.12	14.41
Merged-chr9-20979987-3	chr9	20979899	20980099	+	839.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3206.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	17.36	10.06	13.69	12.87	18.41	12.23	6.64	19.85	20.06	13.56	16.08	10.96
Merged-chr5-88961567-1	chr5	88961467	88961667	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-66399.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	6.06	1.26	4.56	6.84	5.73	8.15	16.94	16.57	2.95	2.51	5.53	0.63
Merged-chr1-144295122-2	chr1	144295009	144295209	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46005.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.65	3.77	9.13	10.86	9.82	13.48	6.98	15.9	13.37	9.04	16.08	11.59
Merged-chr6-26404073-1	chr6	26403973	26404173	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	472647.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	6.86	3.27	2.85	7.24	9.41	9.72	6.64	18.11	7.08	7.53	6.03	7.52
Merged-chr16-33747633-2	chr16	33747533	33747733	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 10 of 14)	L1MA6|LINE|L1	-46404.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	2.42	2.01	10.27	8.04	6.95	1.88	8.64	11.16	8.46	5.52	10.55	3.45
Merged-chr2-171633392-1	chr2	171633292	171633492	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	329407.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	6.46	3.02	2.28	4.42	5.32	19.44	7.64	8.07	1.18	0.0	0.5	0.31
Merged-chr4-89282220-3	chr4	89282112	89282312	+	839.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040654)	promoter-TSS (NM_001040654)	-20.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	8.48	9.31	6.85	6.03	19.23	5.96	15.28	10.37	18.29	15.57	15.58	11.28
Merged-chr16-87654375-3	chr16	87654255	87654455	+	839.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44599.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	8.08	6.54	12.55	16.89	26.59	19.13	17.94	23.72	21.24	15.06	12.56	10.65
Merged-chr4-125146374-3	chr4	125146260	125146460	+	839.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18479.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.44	16.85	9.13	13.27	9.82	16.93	12.62	5.13	12.78	19.58	7.54	15.98
Merged-chr4-105561017-3	chr4	105560900	105561100	+	839.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	403653.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	12.11	5.03	7.99	14.08	12.27	10.35	7.31	9.17	11.21	12.05	17.08	3.76
Merged-chr16-20424936-2	chr16	20424832	20425032	+	839.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	1462.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	7.27	8.55	3.42	3.22	7.77	15.99	7.31	11.05	16.13	12.05	7.54	10.02
Merged-chr7-24890656-3	chr7	24890583	24890783	+	839.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360119)	TTS (NM_001360119)	5770.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	13.33	19.37	17.11	8.85	7.77	25.09	6.64	22.99	14.95	14.06	10.55	6.27
Merged-chr19-45659757-3	chr19	45659735	45659935	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013907, exon 1 of 9)	exon (NM_013907, exon 1 of 9)	358.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	10.5	15.09	13.69	17.7	9.41	12.23	14.95	8.13	20.85	7.03	6.53	15.35
Merged-chr5-140502523-3	chr5	140502462	140502662	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3047.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	14.54	10.06	4.56	8.04	16.36	11.6	12.95	12.0	14.75	11.05	18.59	7.52
Merged-chr13-95503584-1	chr13	95503484	95503684	+	839.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	21656.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	4.85	4.28	4.56	5.23	0.0	0.0	1.33	0.11	21.05	11.55	18.09	15.66
Merged-chr4-119980059-3	chr4	119979899	119980099	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	165321.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.48	6.79	0.57	4.42	6.55	11.6	12.95	6.34	12.0	6.03	7.54	7.21
Merged-chr6-29268646-1	chr6	29268546	29268746	+	839.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3842.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	9.69	1.76	17.68	0.8	7.77	15.99	11.29	15.79	10.03	6.53	4.52	4.39
Merged-chr19-21599178-2	chr19	21599076	21599276	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025423, intron 2 of 3)	intron (NM_025423, intron 2 of 3)	53615.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	12.92	14.09	11.98	9.65	13.5	12.54	9.97	13.43	6.49	6.53	7.03	5.33
Merged-chr4-8691881-3	chr4	8691721	8691921	+	839.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	CpG	1415.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.46	8.3	19.97	7.64	8.59	3.76	12.29	6.84	13.96	13.56	8.54	20.68
Merged-chr7-27507072-3	chr7	27506977	27507177	+	839.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019412, intron 4 of 5)	intron (NM_019412, intron 4 of 5)	7753.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	16.15	14.59	9.13	10.05	10.23	12.23	3.65	12.7	15.54	7.53	17.08	8.77
Merged-chr7-122383475-2	chr7	122383375	122383575	+	839.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	MTEa|LTR|ERVL-MaLR	94350.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.23	1.26	8.56	10.05	11.86	14.74	6.31	16.35	11.6	11.55	16.58	15.98
Merged-chr3-16025195-3	chr3	16025106	16025306	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-18874.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	21.0	11.32	15.4	9.25	15.55	14.11	6.98	5.13	23.21	22.09	19.09	13.16
Merged-chr3-65351767-3	chr3	65351663	65351863	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-2334.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	13.73	8.55	17.11	12.07	17.59	5.64	17.61	11.16	26.36	14.56	25.63	5.95
Merged-chr3-36467817-3	chr3	36467698	36467898	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	7726.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	4.44	7.55	15.97	8.45	15.96	27.28	14.62	20.78	21.05	32.64	21.61	11.59
Merged-chrX-96126916-3	chrX	96126763	96126963	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	30818.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	6.86	7.04	6.28	7.24	13.91	20.07	9.63	14.55	6.88	8.03	8.04	6.89
Merged-chr16-91640396-2	chr16	91640299	91640499	+	839.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357351, intron 4 of 21)	intron (NM_001357351, intron 4 of 21)	6573.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	1.62	1.76	8.56	2.41	6.55	2.82	1.99	8.41	22.42	16.57	27.64	9.4
Merged-chr15-77837902-3	chr15	77837796	77837996	+	839.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	4279.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.06	10.06	21.68	3.62	6.55	12.23	6.31	7.09	16.92	11.55	12.56	5.64
Merged-chr15-75886947-2	chr15	75886852	75887052	+	839.0499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282443, intron 4 of 13)	intron (NM_001282443, intron 4 of 13)	1771.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	3.63	10.82	3.42	4.83	15.14	13.48	5.98	6.48	13.77	12.55	6.53	5.33
Merged-chr7-123312095-2	chr7	123311993	123312193	+	839.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 8 of 19)	intron (NM_001316713, intron 8 of 19)	57822.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	5.65	7.55	2.85	3.22	12.68	7.53	7.31	10.35	16.52	15.57	26.13	10.65
Merged-chrX-166952941-3	chrX	166952838	166953038	+	839.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117432.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	8.88	10.82	4.56	12.07	7.77	7.84	13.95	14.41	14.55	6.53	20.1	10.02
Merged-chr7-30717424-4	chr7	30717314	30717514	+	839.008301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018731, intron 10 of 21)	intron (NM_018731, intron 10 of 21)	5205.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	14.54	14.09	3.42	5.63	11.05	25.4	9.97	14.86	9.05	12.55	15.58	6.58
Merged-chr10-34034108-1	chr10	34034008	34034208	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3489.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	6.86	3.52	4.56	2.82	4.91	4.7	9.97	7.32	7.28	8.03	7.54	3.13
Merged-chr12-34432009-3	chr12	34431916	34432116	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 6 of 27)	intron (NM_001271386, intron 6 of 27)	96873.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.09	15.59	20.54	14.08	12.27	15.37	10.63	12.03	10.62	17.07	15.07	4.39
Merged-chr18-12925945-1	chr18	12925845	12926045	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15896.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.04	5.03	1.71	3.62	2.86	8.78	2.33	7.65	4.72	1.0	10.55	3.45
Merged-chr10-19065426-3	chr10	19065322	19065522	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50012.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	11.31	10.06	3.99	1.61	9.0	19.13	5.31	5.33	18.29	9.54	3.52	6.89
Merged-chr17-24584683-1	chr17	24584583	24584783	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013630, intron 26 of 45)	Tigger6a|DNA|TcMar-Tigger	34733.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	5.65	2.01	3.42	4.83	3.68	2.51	7.31	8.64	3.74	2.51	2.51	4.07
Merged-chr17-29171276-3	chr17	29171144	29171344	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	36188.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	10.09	10.82	13.12	2.41	29.46	57.7	13.29	14.83	8.26	6.03	8.54	4.07
Merged-chr8-106210118-1	chr8	106210018	106210218	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	815.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	4.44	6.29	7.99	4.42	5.32	2.51	5.31	7.77	9.83	8.03	7.03	4.39
Merged-chr9-32501597-2	chr9	32501487	32501687	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	39865.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.65	8.8	6.85	5.23	10.64	8.47	5.65	14.33	14.55	5.02	12.56	8.77
Merged-chr11-101758699-1	chr11	101758599	101758799	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25743.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	2.42	5.28	5.7	6.03	15.55	1.25	2.66	7.29	4.33	4.02	5.02	4.7
Merged-chr1-121427128-1	chr1	121427028	121427228	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3939.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	2.83	3.52	2.28	10.46	6.95	4.7	8.97	9.62	1.57	7.53	8.54	8.14
Merged-chr1-53852192-1	chr1	53852092	53852292	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 20 of 28)	intron (NM_001001883, intron 20 of 28)	2768.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	3.63	1.01	1.14	2.41	1.64	7.84	6.64	6.31	5.9	7.53	4.52	2.19
Merged-chr1-157433604-1	chr1	157433504	157433704	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21009.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.0	0.0	0.57	0.8	7.36	8.78	6.98	9.62	2.36	0.0	1.0	2.19
Merged-chr15-58754771-1	chr15	58754671	58754871	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68656.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.46	2.52	7.99	10.86	9.82	3.76	10.96	8.33	6.88	2.51	1.0	1.57
Merged-chr8-88290577-2	chr8	88290471	88290671	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037723, intron 1 of 27)	intron (NM_001037723, intron 1 of 27)	1505.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.85	7.04	13.12	16.89	7.77	4.08	2.33	4.85	4.92	3.51	8.04	9.08
Merged-chrUn_JH584304-90546-1	chrUn_JH584304	90446	90646	+	839.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-30857.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.98	20.08	9.04	17.54
Merged-chr2-29632413-3	chr2	29632315	29632515	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	L1MB3|LINE|L1	12695.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	9.69	7.55	7.99	12.87	17.59	13.17	8.64	13.21	17.11	16.07	15.58	15.98
Merged-chr2-90542282-3	chr2	90542198	90542398	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	MIR3|SINE|MIR	38349.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	9.69	9.56	1.71	4.42	11.86	21.01	4.65	9.67	14.16	23.1	8.54	10.96
Merged-chr10-122534603-1	chr10	122534503	122534703	+	839.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	35288.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.81	4.53	7.99	4.02	11.86	5.96	6.64	9.34	6.1	9.04	12.06	9.08
Merged-chr5-88765694-1	chr5	88765594	88765794	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007832, intron 1 of 6)	L1ME1|LINE|L1	681.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	6.46	3.52	7.42	6.03	4.09	5.96	5.98	10.18	7.28	11.55	4.02	9.08
Merged-chr2-93162156-3	chr2	93162068	93162268	+	838.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25380.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	18.17	19.12	17.11	16.09	4.91	7.21	10.63	13.6	8.85	12.55	25.63	8.46
Merged-chr15-6587008-3	chr15	6586912	6587112	+	838.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	7165.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	8.48	11.32	19.4	9.65	11.45	5.64	4.32	14.27	16.72	11.55	16.58	9.4
Merged-chr17-83706567-6	chr17	83706446	83706646	+	838.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 1 of 16)	intron (NM_054082, intron 1 of 16)	383.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	1.21	9.56	6.28	9.25	5.73	8.47	5.31	6.59	6.49	17.07	10.05	6.58
Merged-chrX-73574675-3	chrX	73574575	73574775	+	838.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64766.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	14.54	15.34	12.55	29.36	10.23	4.7	10.3	19.63	10.82	17.07	6.53	8.77
Merged-chr10-80245879-3	chr10	80245778	80245978	+	838.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023431)	TTS (NM_023431)	-3574.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	10.5	12.07	10.84	7.24	8.18	14.74	1.99	13.54	14.95	18.58	7.54	11.9
Merged-chr1-152168528-3	chr1	152168421	152168621	+	838.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78201.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	18.98	11.57	12.55	33.78	11.45	6.59	25.58	24.5	9.44	5.02	6.03	9.08
Merged-chr9-107526787-2	chr9	107526693	107526893	+	838.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020263, exon 36 of 39)	exon (NM_020263, exon 36 of 39)	-7152.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	14.94	10.56	9.13	14.48	16.36	15.05	8.97	14.16	6.88	4.52	3.52	4.39
Merged-chr17-33781873-4	chr17	33781818	33782018	+	838.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020581)	promoter-TSS (NM_020581)	-343.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	8.08	7.8	3.42	3.22	8.18	7.53	4.98	3.98	8.06	6.53	9.04	2.82
Merged-chr3-137969360-1	chr3	137969260	137969460	+	838.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12189.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.04	3.52	7.42	6.84	11.45	9.41	7.97	11.24	11.21	3.01	24.12	5.95
Merged-chr7-28932677-3	chr7	28932603	28932803	+	838.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	29629.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	6.06	9.81	11.41	9.65	8.18	10.35	12.62	10.26	6.29	11.55	16.58	12.84
Merged-chr14-59555180-3	chr14	59555084	59555284	+	838.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42775.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	12.11	6.04	13.69	21.72	15.55	11.29	20.59	23.47	18.29	8.03	25.12	10.02
Merged-chr4-95163308-3	chr4	95163232	95163432	+	838.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111110.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	10.9	7.8	10.84	18.1	8.59	10.03	13.95	12.9	11.6	6.03	17.59	15.35
Merged-chr14-54750753-1	chr14	54750653	54750853	+	838.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	31133.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	8.08	4.02	3.42	4.42	12.68	7.21	7.97	12.42	6.1	6.53	4.52	6.27
Merged-chr15-9120242-3	chr15	9120133	9120333	+	838.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 7 of 9)	intron (NM_013787, intron 7 of 9)	20221.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.65	10.56	10.84	2.82	7.36	10.98	7.31	14.97	22.23	14.06	13.06	7.21
Merged-chr2-62630656-3	chr2	62630564	62630764	+	838.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164477, intron 2 of 14)	intron (NM_001164477, intron 2 of 14)	15591.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	16.15	12.32	5.7	5.63	10.23	9.09	5.31	7.51	13.77	14.56	19.09	5.01
Merged-chr2-34610575-3	chr2	34610371	34610571	+	838.774597	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290625, intron 10 of 11)	B4A|SINE|B4	144761.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	3.63	4.78	2.28	1.61	4.91	4.39	2.99	3.98	7.87	8.03	3.52	2.51
Merged-chr7-7278320-3	chr7	7278208	7278408	+	838.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003555)	promoter-TSS (NR_003555)	-19.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	8.08	7.29	10.27	16.49	11.86	15.37	17.94	3.03	30.88	55.73	34.67	31.95
Merged-chr4-120033173-2	chr4	120033093	120033293	+	838.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	CpG	-128013.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.65	3.52	7.42	2.82	4.09	8.78	8.3	6.28	11.41	7.53	6.53	5.33
Merged-chrX-113172902-3	chrX	113172807	113173007	+	838.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018818, intron 1 of 14)	MTD|LTR|ERVL-MaLR	12608.0	NM_018818	12662.0	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	5.65	18.61	3.99	9.65	17.18	7.53	11.29	12.98	18.1	11.55	27.13	17.54
Merged-chr1-165459657-3	chr1	165459566	165459766	+	838.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028759, intron 1 of 18)	CpG	797.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	6.06	6.04	9.7	7.24	10.64	6.59	6.31	5.07	12.39	11.55	6.53	7.52
Merged-chr11-116089196-3	chr11	116089101	116089301	+	838.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2206.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	14.54	13.33	11.41	11.26	15.14	16.93	3.99	3.39	17.31	11.55	16.08	12.53
Merged-chr1-13267619-3	chr1	13267465	13267665	+	838.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 2 of 22)	(CCG)n|Simple_repeat|Simple_repeat	104864.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	12.11	6.04	19.97	19.31	7.36	5.64	8.3	7.18	10.82	8.54	8.54	13.78
Merged-chr3-52468538-3	chr3	52468421	52468621	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-48443.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	16.15	9.81	11.41	4.83	7.77	14.74	3.99	12.98	19.47	16.07	19.6	14.41
Merged-chr2-73066752-1	chr2	73066652	73066852	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86306.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.85	6.29	2.85	6.84	2.86	4.39	6.98	9.81	0.98	3.01	2.51	0.63
Merged-chr4-141652045-1	chr4	141651945	141652145	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12070.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.23	2.77	2.85	3.62	11.45	1.88	4.65	7.88	4.92	7.03	4.52	4.39
Merged-chr12-33332193-3	chr12	33332094	33332294	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	29679.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	11.71	7.04	14.83	14.48	14.32	12.54	9.97	20.41	13.77	8.54	22.11	14.41
Merged-chr10-53431191-3	chr10	53431097	53431297	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21315.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	7.27	3.77	10.27	16.89	9.0	7.84	32.55	20.83	19.28	16.07	29.65	13.16
Merged-chr5-105138319-3	chr5	105138221	105138421	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008620, intron 1 of 10)	intron (NM_008620, intron 1 of 10)	1265.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	8.88	11.82	15.97	9.25	15.14	13.8	15.28	9.87	18.69	12.05	14.57	9.08
Merged-chr14-120157591-1	chr14	120157491	120157691	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115156.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	2.42	6.29	3.99	1.61	9.0	8.15	9.3	11.66	3.34	5.02	5.53	8.77
Merged-chr9-118554577-1	chr9	118554477	118554677	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018748, intron 14 of 23)	intron (NM_018748, intron 14 of 23)	48259.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	3.23	2.26	1.14	7.24	13.91	5.64	6.31	8.47	1.97	1.51	0.0	3.13
Merged-chr10-95670057-1	chr10	95669957	95670157	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-105911.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.04	8.8	7.42	1.61	13.91	7.84	5.31	10.35	8.46	5.02	5.02	5.33
Merged-chr7-98535352-1	chr7	98535252	98535452	+	838.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41130.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	7.27	6.04	1.14	0.0	3.27	10.35	2.66	2.19	12.78	13.05	5.02	7.21
Merged-chr1-138044746-1	chr1	138044646	138044846	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78107.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	5.25	4.02	6.85	2.01	2.45	7.53	7.64	10.99	17.9	9.54	8.54	2.82
Merged-chr5-21056718-1	chr5	21056618	21056818	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-807.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.04	1.51	0.57	4.02	2.05	6.27	6.98	8.1	7.28	8.54	8.54	8.14
Merged-chr4-34269334-1	chr4	34269234	34269434	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-219267.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	7.27	2.77	7.99	16.09	7.36	8.78	19.27	20.27	2.95	3.51	6.53	5.64
Merged-chr18-12648289-3	chr18	12648185	12648385	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	4752.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	8.08	6.29	1.71	6.84	4.5	11.92	5.98	9.2	15.54	16.57	25.12	9.4
Merged-chr18-83815810-2	chr18	83815701	83815901	+	838.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270761.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.44	2.26	3.42	1.61	9.82	4.7	4.98	11.69	16.92	7.53	12.06	3.45
Merged-chr7-110258499-2	chr7	110258423	110258623	+	838.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009302, intron 3 of 11)	PB1D10|SINE|Alu	36820.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	13.73	21.13	7.42	6.44	5.32	13.17	3.65	4.54	10.62	1.0	5.02	2.51
Merged-chr19-5094476-3	chr19	5094445	5094645	+	838.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009920, intron 2 of 5)	intron (NM_009920, intron 2 of 5)	3976.0	NM_001302333	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	14.54	5.79	6.85	1.21	11.45	4.08	2.33	5.64	10.42	18.08	11.56	3.76
Merged-chr8-25056636-2	chr8	25056535	25056735	+	838.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 9 of 11)	intron (NM_031257, intron 9 of 11)	-17673.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	6.46	4.02	6.85	8.45	3.68	9.41	7.31	9.08	14.36	13.05	11.05	13.78
Merged-chr3-79075234-3	chr3	79075149	79075349	+	838.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 19 of 23)	intron (NM_001099624, intron 19 of 23)	69638.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.06	10.06	9.13	6.44	14.32	12.54	14.62	19.77	15.93	10.04	19.6	9.08
Merged-chr10-82699795-3	chr10	82699659	82699859	+	838.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081218, intron 1 of 14)	CpG	752.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	10.09	9.31	9.13	11.26	11.45	12.86	8.3	10.29	12.98	5.52	11.56	12.53
Merged-chr15-101077755-3	chr15	101077611	101077811	+	838.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23312.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	10.09	7.8	2.28	4.83	6.55	17.87	7.31	4.85	6.69	5.52	8.04	3.45
Merged-chr5-20701637-3	chr5	20701527	20701727	+	838.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	180497.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	8.08	11.32	9.7	6.44	6.95	14.74	12.29	12.76	16.33	26.11	26.63	16.29
Merged-chr6-83417538-5	chr6	83417446	83417646	+	838.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	B1_Mus2|SINE|Alu	-16444.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	4.44	2.01	6.28	7.64	4.09	13.48	4.65	4.4	10.03	15.06	12.56	12.22
Merged-chr6-87530326-3	chr6	87530228	87530428	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2931.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.62	6.54	11.41	8.85	4.5	10.35	8.97	9.42	14.55	7.53	17.08	9.4
Merged-chr10-84778166-3	chr10	84778080	84778280	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	22132.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	4.44	4.53	12.55	9.65	13.91	9.41	11.29	14.1	15.54	6.53	27.64	13.47
Merged-chr2-27593499-3	chr2	27593447	27593647	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78400.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	13.33	8.05	16.54	8.04	18.82	10.03	13.29	14.75	10.82	9.04	8.54	7.52
Merged-chr2-167839438-3	chr2	167839337	167839537	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92890.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.04	12.07	7.42	11.66	5.32	8.47	14.28	8.64	7.67	13.05	14.57	9.08
Merged-chr2-158348140-3	chr2	158348024	158348224	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13385.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	15.34	10.56	4.56	4.83	11.05	12.23	3.32	5.5	15.54	13.05	8.04	5.64
Merged-chr16-18396698-3	chr16	18396659	18396859	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	4196.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	7.27	10.31	5.13	17.29	4.09	7.84	8.3	8.41	2.75	4.52	9.55	6.89
Merged-chr17-44432961-3	chr17	44432853	44433053	+	838.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	244381.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	11.71	9.56	31.38	9.25	18.0	9.41	14.62	13.82	20.26	17.07	12.56	8.14
Merged-chr14-55491011-1	chr14	55490911	55491111	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024645)	promoter-TSS (NM_001024645)	-59.0	NM_001024645	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	7.27	8.05	9.7	6.84	7.36	13.48	2.99	7.63	5.51	4.02	8.04	4.7
Merged-chr6-56901315-4	chr6	56901174	56901374	+	838.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360963, intron 1 of 9)	ID4_|SINE|ID	612.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	5.65	7.55	2.28	0.8	4.09	0.0	4.65	2.89	9.24	10.04	7.54	7.83
Merged-chr1-162589702-2	chr1	162589615	162589815	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356527, intron 6 of 7)	intron (NM_001356527, intron 6 of 7)	18887.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	1.21	3.02	3.42	3.22	17.18	12.54	6.98	32.05	11.8	7.53	21.1	15.35
Merged-chr10-122604244-2	chr10	122604137	122604337	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34346.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.25	2.01	6.85	7.24	2.05	5.02	5.65	10.6	8.26	20.08	21.1	6.27
Merged-chr8-70355987-1	chr8	70355887	70356087	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2708.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.04	3.02	2.28	0.8	12.27	5.64	10.3	7.21	7.87	5.02	5.53	2.51
Merged-chr1-51491981-2	chr1	51491886	51492086	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger12A|DNA|TcMar-Tigger	-13587.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.65	5.03	7.42	7.24	4.09	8.15	3.99	13.32	10.62	21.09	12.56	5.95
Merged-chr9-58559765-1	chr9	58559665	58559865	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18825.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.44	2.77	3.42	1.61	13.5	14.42	4.65	7.79	5.11	8.03	0.5	1.25
Merged-chr5-66005481-3	chr5	66005381	66005581	+	838.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1196.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	11.31	10.56	12.55	7.64	13.09	14.42	6.64	14.19	24.19	10.04	17.59	7.52
Merged-chr11-75255536-3	chr11	75255428	75255628	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	61535.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	10.09	9.06	3.42	8.04	24.55	34.49	9.3	10.29	30.49	20.59	35.68	11.28
Merged-chr1-94147209-3	chr1	94147055	94147255	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94602.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	11.71	8.3	12.55	6.03	7.77	7.21	8.97	13.04	6.69	7.53	18.59	5.64
Merged-chr17-67473354-3	chr17	67473251	67473451	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118860.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	12.92	15.34	10.84	7.24	15.96	9.41	4.32	14.94	12.39	17.57	22.11	17.86
Merged-chr3-61426080-3	chr3	61425990	61426190	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61583.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	14.13	7.55	17.11	12.07	18.0	6.59	7.64	19.21	17.31	12.55	19.09	8.14
Merged-chr8-46817403-3	chr8	46817295	46817495	+	838.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	77650.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	10.09	6.54	15.97	9.65	19.23	21.32	15.61	18.31	15.14	19.08	10.05	16.6
Merged-chr15-97884397-3	chr15	97884295	97884495	+	838.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	23901.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	11.31	17.1	31.38	13.67	11.45	13.48	8.64	7.35	16.13	14.06	26.63	13.16
Merged-chr10-51553973-3	chr10	51553882	51554082	+	838.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36478.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	13.33	8.3	4.56	9.65	7.77	11.92	5.98	15.62	17.7	20.59	10.55	7.52
Merged-chr17-48825683-3	chr17	48825599	48825799	+	838.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-106883.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	4.85	11.32	10.27	8.04	33.55	25.4	23.58	30.31	13.77	9.04	24.62	12.84
Merged-chr15-94629070-3	chr15	94628990	94629190	+	838.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178789)	promoter-TSS (NM_178789)	-95.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	7.67	2.52	6.28	13.27	7.36	5.02	11.96	11.72	15.34	11.05	20.1	14.41
Merged-chr16-38475723-4	chr16	38475576	38475776	+	838.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	16743.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	5.65	6.04	3.42	1.61	4.5	9.72	3.99	2.52	5.7	4.52	7.54	5.95
Merged-chr14-26531989-3	chr14	26531875	26532075	+	838.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	2649.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	12.11	9.81	26.24	10.86	11.05	11.29	9.63	21.79	23.6	10.04	9.55	10.02
Merged-chr12-32793972-2	chr12	32793875	32794075	+	838.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26360.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	11.71	10.31	10.84	10.46	8.59	26.03	4.32	7.99	0.98	2.01	0.0	0.94
Merged-chr7-98314145-2	chr7	98314039	98314239	+	838.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	-4597.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	11.31	5.03	17.11	13.27	9.41	12.23	8.64	20.72	1.97	1.51	6.53	3.76
Merged-chr14-106668383-2	chr14	106668296	106668496	+	838.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-181876.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	5.65	3.02	8.56	10.46	14.73	11.92	14.62	12.93	18.88	10.04	12.06	8.46
Merged-chr1-161494485-3	chr1	161494395	161494595	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183391)	promoter-TSS (NM_183391)	-162.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	10.9	7.8	15.97	13.67	14.73	12.23	16.28	26.94	10.82	13.05	18.59	9.08
Merged-chr7-104647284-3	chr7	104647179	104647379	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147049)	promoter-TSS (NM_147049)	26.0	NM_147049	259051.0	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	11.31	6.29	13.12	6.03	20.46	21.01	16.28	17.52	12.19	14.56	22.61	12.84
Merged-chr10-77902382-3	chr10	77902255	77902455	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145152, intron 1 of 1)	CpG	181.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	6.06	19.87	11.41	10.86	13.09	4.39	6.64	7.04	10.23	10.04	12.06	7.83
Merged-chr14-47393886-1	chr14	47393786	47393986	+	838.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144553, intron 15 of 18)	PB1|SINE|Alu	20026.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.86	5.03	7.99	5.63	6.14	6.27	9.3	13.71	3.15	1.51	4.52	3.45
Merged-chr9-123539300-3	chr9	123539201	123539401	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	9548.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	16.15	5.53	21.68	15.69	4.91	8.15	3.65	5.66	18.1	15.57	13.06	8.14
Merged-chr6-90606776-3	chr6	90606669	90606869	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	1889.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	3.63	9.81	4.56	3.62	10.23	4.39	7.64	7.65	6.29	17.07	17.08	10.34
Merged-chr3-96152074-1	chr3	96151974	96152174	+	838.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025613, intron 10 of 12)	intron (NM_001025613, intron 10 of 12)	-9896.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	6.06	2.26	8.56	10.46	11.45	9.41	12.95	6.53	8.06	4.02	10.55	9.71
Merged-chr3-69699436-3	chr3	69699281	69699481	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22674.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	9.29	6.79	11.41	5.23	10.64	9.72	2.99	2.27	5.31	9.04	8.04	1.25
Merged-chr5-96896203-1	chr5	96896103	96896303	+	838.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25069.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.81	3.02	4.56	3.22	8.59	4.7	10.3	11.66	2.16	1.51	0.5	2.19
Merged-chr3-107034954-3	chr3	107034849	107035049	+	838.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1213.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	8.48	11.32	17.11	9.65	18.0	21.95	19.93	19.96	11.21	11.05	19.09	10.34
Merged-chr17-84922145-1	chr17	84922045	84922245	+	838.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-34596.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	4.85	4.02	3.42	3.22	9.0	9.72	7.31	8.78	4.52	3.01	2.51	2.51
Merged-chr7-49762873-2	chr7	49762760	49762960	+	838.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	3348.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	4.44	4.28	1.14	3.22	16.77	15.05	13.29	13.88	8.06	8.54	9.04	7.52
Merged-chr11-99182667-3	chr11	99182584	99182784	+	838.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27607.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	12.11	7.29	11.41	6.84	13.91	23.83	4.65	12.84	16.13	18.08	15.07	8.46
Merged-chr6-130937052-2	chr6	130936952	130937152	+	838.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	310310.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	10.09	3.02	23.96	17.7	18.0	17.25	10.63	15.17	4.13	3.01	7.03	4.39
Merged-chr4-130784964-3	chr4	130784885	130785085	+	838.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7552.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	13.33	9.56	6.85	11.26	13.09	16.62	7.31	14.66	12.59	6.53	22.11	7.21
Merged-chr8-26435572-3	chr8	26435475	26435675	+	838.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277406.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	13.73	3.52	7.42	20.91	8.59	10.03	11.63	13.18	12.19	6.53	15.58	3.13
Merged-chr16-94223329-5	chr16	94223211	94223411	+	838.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	66980.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.27	12.83	5.13	5.23	8.59	15.05	9.3	16.37	12.39	11.05	17.59	11.59
Merged-chr7-102338002-3	chr7	102337907	102338107	+	838.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	70183.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	12.92	6.79	18.83	17.7	21.68	13.17	7.31	12.2	23.41	13.56	14.07	14.1
Merged-chr16-10192922-3	chr16	10192835	10193035	+	838.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153123)	promoter-TSS (NM_153123)	29.0	NM_029253	75329.0	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	4.04	7.29	0.57	11.26	10.23	9.41	14.95	17.24	11.41	5.52	17.59	9.71
Merged-chr8-37010222-3	chr8	37010138	37010338	+	838.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	14000.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	11.31	6.29	35.37	6.44	12.68	18.5	8.64	11.55	27.54	12.55	42.71	13.47
Merged-chr11-116866352-2	chr11	116866245	116866445	+	838.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	12345.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	10.09	8.3	5.13	12.07	13.09	9.09	3.65	22.51	3.93	2.51	6.53	3.45
Merged-chr8-104077204-2	chr8	104077113	104077313	+	838.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24412.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	6.06	5.79	8.56	12.87	11.86	11.29	17.27	10.43	9.05	20.59	12.56	4.07
Merged-chr11-72940981-2	chr11	72940870	72941070	+	838.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20199.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.63	5.79	2.28	4.02	2.05	13.48	8.3	11.52	10.42	8.54	9.55	7.83
Merged-chr11-94198972-3	chr11	94198866	94199066	+	838.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12488.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	12.92	10.82	20.54	16.89	7.36	7.84	5.31	8.21	11.41	12.55	18.59	10.65
Merged-chr5-77309599-3	chr5	77309488	77309688	+	838.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	498.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	9.69	14.59	17.68	10.05	14.73	15.37	15.28	10.93	20.85	12.05	13.57	11.59
Merged-chr11-96318601-3	chr11	96318503	96318703	+	838.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010459, exon 1 of 2)	5' UTR (NM_010459, exon 1 of 2)	336.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	18.57	9.31	7.99	7.64	10.64	13.8	7.64	13.71	20.46	21.09	29.65	14.41
Merged-chr17-35302005-4	chr17	35301879	35302079	+	838.087524	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18568.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	8.08	8.8	8.56	10.05	6.55	8.78	3.32	5.02	8.85	6.03	9.55	7.52
Merged-chr12-44283536-2	chr12	44283429	44283629	+	838.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026164, exon 2 of 10)	exon (NM_026164, exon 2 of 10)	14375.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	9.69	12.58	5.7	18.9	10.23	12.54	12.29	13.21	4.13	9.54	8.54	4.39
Merged-chr9-45251618-5	chr9	45251559	45251759	+	838.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	15048.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	3.23	6.04	7.99	2.82	9.82	9.09	9.63	8.8	12.59	10.04	8.54	7.21
Merged-chr1-36709222-3	chr1	36709127	36709327	+	838.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146107, intron 1 of 10)	intron (NM_146107, intron 1 of 10)	698.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	6.06	7.04	7.99	9.25	11.05	12.23	7.64	6.93	13.96	8.54	10.55	7.21
Merged-chr17-43538892-3	chr17	43538774	43538974	+	838.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	4765.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	16.96	8.05	11.41	6.03	24.96	33.55	23.58	24.45	12.98	30.13	21.1	4.7
Merged-chr7-66343398-3	chr7	66343310	66343510	+	838.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	38314.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	20.19	24.4	21.68	11.66	13.5	13.17	7.31	5.72	22.62	9.54	14.07	6.58
Merged-chrX-135008376-3	chrX	135008275	135008475	+	838.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175446, intron 1 of 6)	intron (NM_175446, intron 1 of 6)	834.0	NM_175446	215693.0	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	9.69	8.05	8.56	8.85	9.0	17.87	11.96	14.1	18.69	12.05	15.58	7.52
Merged-chr10-85952131-5	chr10	85952022	85952222	+	838.004761	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	5671.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	13.33	6.04	6.28	5.63	9.82	8.47	13.95	12.03	7.28	11.05	8.54	7.52
Merged-chr19-10698218-1	chr19	10698118	10698318	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2550.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	4.44	6.29	1.71	0.8	9.0	4.7	11.29	2.07	2.36	7.03	3.52	3.13
Merged-chr4-33284644-3	chr4	33284544	33284744	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25667.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	15.34	5.53	11.98	15.28	4.91	12.86	13.29	11.44	9.83	7.53	7.54	8.14
Merged-chr12-79838248-1	chr12	79838148	79838348	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	2.83	1.76	2.28	2.41	3.27	0.94	7.97	2.41	2.56	1.51	2.51	1.57
Merged-chr5-140844997-1	chr5	140844897	140845097	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14566.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	2.42	3.02	3.42	7.64	13.91	10.03	4.32	10.18	0.39	2.01	0.0	0.31
Merged-chr18-14669098-1	chr18	14668998	14669198	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	13816.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	4.04	8.8	1.14	3.22	2.45	15.05	2.99	6.59	5.11	10.04	5.53	2.82
Merged-chr6-134916976-1	chr6	134916876	134917076	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	5.65	4.02	0.0	0.8	2.05	5.02	5.31	6.28	1.97	1.0	2.01	3.13
Merged-chr17-5846180-3	chr17	5846087	5846287	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	L1MEd|LINE|L1	4807.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	9.69	11.07	19.97	10.46	15.55	16.31	12.29	35.02	17.7	7.03	13.57	7.21
Merged-chr9-21237266-3	chr9	21237150	21237350	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	2082.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	16.56	9.81	9.13	5.63	24.14	17.56	14.28	19.74	18.1	26.61	22.61	10.34
Merged-chr2-5145977-3	chr2	5145874	5146074	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028804, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8198.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	6.46	10.06	10.27	6.84	5.73	12.23	11.29	15.93	18.49	12.55	21.1	14.72
Merged-chr18-80497028-1	chr18	80496928	80497128	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27361.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	2.83	2.52	1.71	4.42	3.68	2.51	5.98	6.14	2.95	3.51	3.01	1.88
Merged-chr19-32788552-1	chr19	32788452	32788652	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	30975.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.23	4.78	4.56	13.67	5.32	6.59	9.3	9.73	4.52	3.01	7.54	0.0
Merged-chr6-108874683-2	chr6	108874563	108874763	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	46022.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	11.71	13.08	14.83	6.03	10.23	12.23	6.64	9.06	3.54	6.03	6.53	2.19
Merged-chr3-97963691-1	chr3	97963591	97963791	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	33518.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	6.46	2.26	0.57	3.62	8.18	7.53	4.65	8.44	0.2	3.01	2.51	0.31
Merged-chr4-43431873-2	chr4	43431737	43431937	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2703.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	7.67	4.78	4.56	5.23	11.45	7.84	3.99	6.59	12.39	14.06	7.54	8.77
Merged-chr5-116012736-2	chr5	116012640	116012840	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_031869)	TTS (NM_031869)	11688.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.65	9.31	16.54	9.65	17.59	18.5	22.26	28.85	4.92	4.02	10.55	12.53
Merged-chr7-99953852-1	chr7	99953752	99953952	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	26606.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	2.42	1.76	0.57	4.02	2.45	1.57	5.31	6.73	1.57	2.01	1.0	1.57
Merged-chr4-20777678-1	chr4	20777578	20777778	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	990.0	NM_001290410	269513.0	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	6.46	2.52	5.7	6.44	3.68	8.47	0.33	8.02	1.18	2.01	3.01	5.95
Merged-chr7-27356850-1	chr7	27356750	27356950	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-842.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	7.67	12.32	6.85	14.08	4.5	4.7	3.65	3.7	10.03	10.04	9.55	13.16
Merged-chr5-90415163-1	chr5	90415063	90415263	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45707.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	11.31	7.04	7.99	4.83	8.18	12.54	1.99	7.63	9.44	24.1	10.55	5.64
Merged-chr5-115565242-3	chr5	115565196	115565396	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172719)	promoter-TSS (NM_172719)	33.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	12.92	8.3	9.7	4.83	10.64	8.15	3.32	11.83	13.77	11.05	17.59	8.77
Merged-chr7-16261219-1	chr7	16261119	16261319	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1679.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	9.29	5.03	3.99	0.8	9.82	8.47	4.32	11.16	6.29	0.0	5.53	6.27
Merged-chrX-153696215-1	chrX	153696115	153696315	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175429)	promoter-TSS (NM_175429)	65.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	6.46	4.02	0.0	8.85	11.05	6.9	5.31	11.13	6.69	9.04	10.55	5.01
Merged-chr4-59895373-1	chr4	59895273	59895473	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 8 of 8)	B2_Mm2|SINE|B2	19683.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.63	1.51	1.14	4.42	5.32	7.84	0.66	11.21	5.51	8.03	2.01	2.82
Merged-chr15-78878415-1	chr15	78878315	78878515	+	838.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	1225.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	5.25	3.52	8.56	2.41	4.5	4.39	3.32	3.73	13.18	9.54	10.05	8.46
Merged-chr3-96596951-3	chr3	96596831	96597031	+	837.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024851, intron 1 of 1)	intron (NM_001024851, intron 1 of 1)	295.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	6.46	11.07	13.69	4.02	4.5	17.87	5.98	13.15	17.31	14.06	18.09	20.99
Merged-chr4-35219738-3	chr4	35219621	35219821	+	837.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	6159.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	14.94	10.56	13.12	12.87	13.5	8.78	7.97	10.79	12.98	16.07	15.07	5.64
Merged-chr2-124741133-2	chr2	124741019	124741219	+	837.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87538.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	15.75	8.8	11.41	23.33	11.45	10.03	12.95	21.06	7.87	7.53	13.06	5.33
Merged-chr13-115163119-3	chr13	115162997	115163197	+	837.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61133.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	7.67	7.04	17.11	8.04	10.23	14.74	15.61	20.44	13.37	15.57	11.56	8.14
Merged-chr11-75585317-3	chr11	75585225	75585425	+	837.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2754.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	14.94	13.83	10.84	14.48	18.41	20.7	14.95	27.98	10.62	13.56	7.54	15.98
Merged-chr7-104219331-2	chr7	104219232	104219432	+	837.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013616, intron 1 of 7)	intron (NM_001013616, intron 1 of 7)	537.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.0	5.79	2.85	2.82	5.32	5.64	7.97	11.27	9.05	12.05	9.55	5.01
Merged-chr1-39482357-2	chr1	39482267	39482467	+	837.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-3612.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	1.21	4.28	13.12	7.64	6.55	10.98	9.3	6.93	6.49	13.05	15.58	6.58
Merged-chr8-14997790-3	chr8	14997679	14997879	+	837.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037736, intron 27 of 27)	intron (NM_001037736, intron 27 of 27)	-13246.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	14.13	11.57	17.68	15.69	10.64	6.9	6.98	14.64	7.67	13.05	17.08	8.46
Merged-chr9-105186908-3	chr9	105186812	105187012	+	837.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-41830.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	14.94	11.32	22.82	8.04	7.36	14.74	8.64	13.23	9.24	3.01	5.53	8.14
Merged-chr17-36145781-1	chr17	36145681	36145881	+	837.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033517, intron 1 of 3)	CpG	763.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	4.44	5.79	0.57	2.01	9.0	4.08	11.63	6.93	5.31	9.04	2.01	0.63
Merged-chr17-79095835-3	chr17	79095761	79095961	+	837.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16D|LTR|ERVL	43955.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	6.86	9.56	14.83	20.51	13.5	9.09	7.31	12.62	10.42	4.02	10.05	8.77
Merged-chr5-140619632-3	chr5	140619571	140619771	+	837.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175274)	TTS (NM_175274)	12330.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	10.9	4.02	5.13	14.48	16.36	11.6	7.64	7.37	9.24	15.57	8.04	8.14
Merged-chr14-73411119-3	chr14	73411003	73411203	+	837.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25814.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	14.54	5.53	9.7	15.69	9.41	23.52	15.28	11.83	14.55	5.52	11.05	11.59
Merged-chr2-32447842-3	chr2	32447740	32447940	+	837.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-2617.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	12.11	12.58	22.82	12.07	22.5	12.86	7.97	17.78	14.16	12.55	13.57	9.4
Merged-chr17-62604508-1	chr17	62604408	62604608	+	837.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_207654, exon 5 of 5)	3' UTR (NM_207654, exon 5 of 5)	276809.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	2.42	4.02	7.99	6.84	10.23	8.78	8.3	9.08	8.65	4.02	9.55	4.39
Merged-chr5-134494386-2	chr5	134494258	134494458	+	837.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009990, exon 14 of 17)	exon (NM_009990, exon 14 of 17)	-37642.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	6.86	9.31	6.85	3.62	8.18	9.09	4.32	13.12	10.42	9.04	10.05	3.45
Merged-chr11-3125473-5	chr11	3125323	3125523	+	837.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003517, intron 1 of 6)	B1_Mus1|SINE|Alu	1402.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	6.06	4.78	2.85	4.42	13.09	23.52	12.95	4.21	9.44	7.03	11.56	6.58
Merged-chr9-124080671-3	chr9	124080559	124080759	+	837.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEy-int|LTR|ERVK	-21524.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	17.36	5.03	16.54	11.66	15.55	17.25	7.64	1.49	23.41	24.6	16.08	13.47
Merged-chr13-120259891-3	chr13	120259728	120259928	+	837.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3267.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	12.11	12.07	26.24	11.66	6.55	18.81	4.65	2.94	18.88	7.53	16.08	10.96
Merged-chr10-22059592-1	chr10	22059492	22059692	+	837.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	8487.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.4	0.5	0.57	0.0	1.64	1.88	0.0	1.99	14.16	10.54	17.59	10.65
Merged-chr7-140948448-3	chr7	140948313	140948513	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053088)	TTS (NM_053088)	1826.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	13.33	6.29	16.54	16.89	6.95	7.53	11.96	20.92	8.46	6.53	21.1	7.52
Merged-chr3-37744112-4	chr3	37743981	37744181	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19721.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.63	5.79	3.42	2.01	17.18	30.1	10.3	6.03	12.39	15.57	14.07	11.28
Merged-chr1-35972369-3	chr1	35972253	35972453	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96047.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	11.71	13.33	20.54	9.65	11.05	8.47	13.29	22.54	11.21	18.58	19.09	7.83
Merged-chr10-68248859-2	chr10	68248756	68248956	+	837.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29870.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.04	10.56	5.13	4.42	19.64	7.84	15.28	14.64	12.39	9.54	9.04	10.34
Merged-chr13-43752622-3	chr13	43752497	43752697	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	-32515.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	10.09	6.79	12.55	11.66	11.45	12.23	10.63	21.11	20.65	18.58	13.06	17.54
Merged-chr2-157131141-3	chr2	157131103	157131303	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	4019.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.25	1.26	1.14	4.83	11.45	3.76	4.32	3.98	6.69	4.52	5.53	8.46
Merged-chr13-12264938-2	chr13	12264846	12265046	+	837.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6833.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	3.23	10.31	7.42	6.44	7.36	22.26	3.99	9.59	12.19	13.05	13.06	2.82
Merged-chr3-52361047-3	chr3	52360953	52361153	+	837.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92716.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	13.73	7.8	17.11	18.5	9.82	17.56	7.64	11.61	10.23	5.02	15.58	8.46
Merged-chr17-47738469-4	chr17	47738400	47738600	+	837.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	CpG	569.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	10.9	10.56	15.97	17.29	11.05	7.84	6.31	9.56	14.95	8.54	8.04	12.84
Merged-chr17-5521762-3	chr17	5521658	5521858	+	837.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	29158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	10.09	10.06	19.4	12.07	18.41	23.83	19.93	19.91	13.18	10.54	19.6	17.54
Merged-chrX-163751161-3	chrX	163751069	163751269	+	837.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10163.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	15.75	11.82	11.98	16.09	8.18	12.54	12.95	11.86	19.87	8.54	14.07	6.58
Merged-chr2-128739512-1	chr2	128739412	128739612	+	837.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	40597.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.21	3.27	3.42	6.84	8.59	9.72	4.32	10.18	6.88	5.52	4.52	3.76
Merged-chr1-71730389-1	chr1	71730289	71730489	+	837.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77054.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	2.42	2.26	0.0	4.83	8.18	9.41	8.3	9.03	10.62	10.54	6.03	5.95
Merged-chr13-81144688-2	chr13	81144626	81144826	+	837.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	180652.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.23	2.77	2.28	6.03	7.77	7.53	8.97	5.07	8.06	4.02	10.05	6.89
Merged-chr1-43554553-2	chr1	43554430	43554630	+	837.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010879, exon 4 of 5)	exon (NM_010879, exon 4 of 5)	108779.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	10.9	2.77	7.42	15.69	13.91	11.6	9.63	14.24	9.83	2.51	7.54	8.46
Merged-chr7-143119431-3	chr7	143119262	143119462	+	837.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	12108.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	13.33	9.56	4.56	8.85	15.96	11.29	3.32	8.38	7.28	8.54	6.53	10.96
Merged-chr6-40236014-3	chr6	40235911	40236111	+	837.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-89467.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	12.92	9.31	9.13	10.46	14.73	19.13	11.96	25.35	15.54	15.06	8.04	8.14
Merged-chr11-8594779-3	chr11	8594685	8594885	+	837.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	URR1A|DNA|hAT-Charlie	69750.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.88	9.81	10.27	16.89	21.27	13.8	18.93	15.84	24.19	24.6	12.56	14.1
Merged-chr13-94094380-2	chr13	94094267	94094467	+	837.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	36571.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	14.54	13.08	21.68	12.07	6.95	10.66	8.64	8.69	2.56	3.51	7.03	2.19
Merged-chr17-29773524-3	chr17	29773423	29773623	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56506.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	14.94	11.32	5.13	4.02	9.82	10.66	5.31	4.6	16.33	10.54	21.1	5.95
Merged-chr15-78899018-3	chr15	78898889	78899089	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	-779.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	15.34	20.37	10.27	11.66	18.0	15.99	6.31	12.95	8.26	7.03	12.56	2.51
Merged-chr18-62090389-1	chr18	62090289	62090489	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89592.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	7.27	2.26	4.56	3.62	7.77	8.47	1.99	9.79	3.15	8.03	3.52	2.82
Merged-chr10-4155727-1	chr10	4155627	4155827	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172308, exon 28 of 28)	3' UTR (NM_172308, exon 28 of 28)	57393.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	6.06	0.75	3.42	5.23	3.27	5.64	10.63	11.61	2.16	0.5	0.0	2.19
Merged-chr14-65345248-3	chr14	65345154	65345354	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13422.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.86	4.78	12.55	12.47	13.91	12.23	2.33	13.82	26.36	14.06	21.1	20.36
Merged-chr3-82799925-1	chr3	82799825	82800025	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76558.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	5.65	2.52	4.56	11.26	8.59	6.59	3.65	11.66	4.52	4.52	7.54	7.83
Merged-chr9-114390540-4	chr9	114390426	114390626	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	186.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	13.33	12.83	7.42	10.05	23.32	10.03	18.93	18.11	12.98	17.07	18.09	13.47
Merged-chr2-126478346-1	chr2	126478246	126478446	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13207.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	5.25	1.76	1.14	2.01	3.27	8.15	5.31	8.75	6.1	3.01	5.53	2.82
Merged-chr15-75727805-3	chr15	75727694	75727894	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20128.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	15.75	13.58	13.12	2.82	4.91	8.47	6.98	10.65	14.36	10.54	11.56	8.46
Merged-chr19-55702925-3	chr19	55702830	55703030	+	837.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045318)	promoter-TSS (NR_045318)	-726.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	14.54	9.56	25.67	12.07	11.05	11.6	10.63	13.54	13.37	19.08	13.57	10.34
Merged-chr1-136170288-3	chr1	136170187	136170387	+	837.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 30 of 34)	intron (NM_001039472, intron 30 of 34)	38897.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	10.5	7.8	10.84	14.08	6.55	15.68	10.63	16.26	18.1	17.07	29.65	9.71
Merged-chr7-135598624-3	chr7	135598518	135598718	+	837.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	5137.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	19.38	8.3	12.55	14.48	20.46	9.41	13.29	17.86	16.72	18.58	11.56	12.22
Merged-chr17-29765292-3	chr17	29765198	29765398	+	837.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48281.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	4.85	9.31	10.27	6.84	2.45	37.63	3.99	13.68	15.14	18.08	37.69	7.83
Merged-chr2-116894049-3	chr2	116893928	116894128	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6124.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.46	10.82	7.42	6.84	4.09	15.37	9.97	9.14	22.23	9.04	14.57	5.01
Merged-chr10-118110211-3	chr10	118110123	118110323	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31564.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.08	8.3	4.56	12.87	6.95	6.27	13.95	23.16	11.8	14.56	25.12	17.23
Merged-chr11-54028730-3	chr11	54028630	54028830	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-626.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	9.69	8.3	15.4	4.42	10.64	13.8	15.94	15.08	11.21	12.55	16.58	8.77
Merged-chr18-10136566-3	chr18	10136453	10136653	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009071, intron 4 of 32)	intron (NM_009071, intron 4 of 32)	45239.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	9.29	3.02	21.68	18.5	5.32	5.02	7.97	15.48	12.78	8.54	7.03	10.02
Merged-chr18-6055793-3	chr18	6055692	6055892	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029277, intron 7 of 17)	intron (NM_029277, intron 7 of 17)	80306.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	13.33	12.07	4.56	9.65	17.59	15.68	2.66	6.56	12.98	6.03	6.03	11.59
Merged-chr2-138258122-3	chr2	138258013	138258213	+	837.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1529.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	8.88	16.6	9.7	11.66	16.77	20.07	7.97	13.23	22.42	21.09	12.06	9.08
Merged-chr16-57215690-2	chr16	57215566	57215766	+	837.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14195.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	5.65	5.79	10.84	5.63	9.41	2.2	10.96	6.7	6.69	6.53	12.56	6.89
Merged-chr6-115879930-3	chr6	115879834	115880034	+	837.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167763, intron 5 of 28)	intron (NM_001167763, intron 5 of 28)	26406.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	3.23	11.57	5.7	8.85	10.23	19.13	13.29	29.5	10.03	6.03	22.61	14.1
Merged-chr9-40642876-4	chr9	40642728	40642928	+	837.3779910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43136.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.25	5.53	9.7	9.65	12.27	10.35	12.95	11.94	3.54	7.03	8.54	9.08
Merged-chr13-44504694-4	chr13	44504588	44504788	+	837.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	64961.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	23.02	17.36	9.13	10.46	20.46	13.17	11.29	15.08	13.77	20.59	21.1	8.77
Merged-chr12-108637193-2	chr12	108637097	108637297	+	837.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	1444.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	11.71	4.78	7.99	7.64	9.0	10.66	9.97	15.95	12.19	8.54	25.12	10.96
Merged-chr5-35693787-3	chr5	35693704	35693904	+	837.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14024.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	14.54	13.08	9.7	6.84	7.36	9.72	14.95	13.26	10.62	8.54	24.12	8.14
Merged-chr17-81703966-2	chr17	81703866	81704066	+	837.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34421.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	19.38	9.06	5.7	10.05	4.91	13.48	2.99	10.43	16.33	16.57	16.08	6.27
Merged-chr17-26639921-1	chr17	26639821	26640021	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 8 of 9)	(A)n|Simple_repeat|Simple_repeat	-36475.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	1.62	1.76	1.14	3.62	10.64	1.88	7.97	9.81	6.1	1.51	4.02	6.89
Merged-chr14-74929013-3	chr14	74928914	74929114	+	837.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	18863.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.86	10.06	23.39	18.1	3.68	11.92	1.99	8.52	7.87	1.51	12.06	9.71
Merged-chr6-24984800-1	chr6	24984700	24984900	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28675.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	5.25	3.77	1.14	4.83	10.23	11.29	11.96	19.6	6.69	7.03	7.03	4.07
Merged-chr18-82529686-1	chr18	82529586	82529786	+	837.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24777.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.44	7.55	14.26	8.85	0.0	0.94	0.0	1.37	3.34	0.5	0.0	1.88
Merged-chr13-81351212-1	chr13	81351112	81351312	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	Lx9|LINE|L1	281932.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	6.06	3.77	8.56	9.65	15.96	11.29	7.97	10.88	7.47	10.04	9.04	6.89
Merged-chr2-155133888-1	chr2	155133788	155133988	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	407.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	9.69	3.27	4.56	13.67	6.55	3.14	4.32	7.57	6.69	8.03	7.03	6.58
Merged-chr18-9708707-1	chr18	9708607	9708807	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1059.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.85	5.53	0.57	14.08	8.18	11.29	12.62	13.32	4.13	7.53	7.03	5.33
Merged-chr1-34013559-3	chr1	34013452	34013652	+	837.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134448, intron 1 of 97)	intron (NM_134448, intron 1 of 97)	1727.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.85	6.79	5.13	8.85	13.09	15.99	13.62	12.06	23.01	14.06	8.54	13.47
Merged-chr15-61984503-3	chr15	61984417	61984617	+	837.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-824.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	10.09	9.06	9.13	10.86	13.91	16.31	14.95	9.31	12.0	8.54	10.05	8.77
Merged-chr2-164803617-3	chr2	164803530	164803730	+	837.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1251.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	12.11	9.81	19.97	20.51	12.27	9.09	2.33	10.65	23.41	20.59	11.56	6.89
Merged-chr12-84675106-3	chr12	84674999	84675199	+	837.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23708.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	12.92	10.06	9.7	10.05	5.73	14.42	8.3	6.81	12.39	6.03	12.06	10.34
Merged-chr2-25423230-2	chr2	25423146	25423346	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	4.0	NM_001289456	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	7.67	4.78	2.28	6.84	17.59	14.74	8.3	9.7	13.57	8.03	11.05	14.41
Merged-chr3-107819314-1	chr3	107819214	107819414	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-57916.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	2.42	2.52	3.42	8.45	2.45	5.02	8.64	9.67	3.15	3.51	2.51	5.01
Merged-chr2-4890583-2	chr2	4890492	4890692	+	837.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	9028.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	6.06	8.8	2.28	18.5	4.09	7.53	8.3	13.09	11.41	3.01	7.03	1.88
Merged-chr10-14459994-2	chr10	14459893	14460093	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 4 of 24)	intron (NM_001002268, intron 4 of 24)	85043.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.04	1.76	3.42	3.22	3.27	17.25	5.98	11.47	12.78	11.05	7.54	7.21
Merged-chr3-98061259-2	chr3	98061168	98061368	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	T-rich|Low_complexity|Low_complexity	47730.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.85	7.8	6.85	7.24	6.55	7.53	2.66	5.78	16.52	12.05	17.59	7.21
Merged-chr1-80641460-3	chr1	80641368	80641568	+	837.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23884.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	7.67	11.32	13.69	10.05	11.05	19.13	8.3	12.0	21.64	14.56	17.08	5.33
Merged-chr1-171382289-3	chr1	171382188	171382388	+	837.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122680, intron 2 of 7)	intron (NM_001122680, intron 2 of 7)	-6672.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	15.75	13.83	21.68	10.05	14.32	12.23	6.31	7.35	14.95	11.05	10.55	13.47
Merged-chr6-50944074-1	chr6	50943974	50944174	+	837.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	167959.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	2.41	2.45	1.25	3.32	4.37	8.65	14.06	16.58	8.77
Merged-chr6-99522170-3	chr6	99522052	99522252	+	837.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-12329	-1159.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.67	10.82	6.85	13.67	10.23	4.39	13.62	11.61	15.54	9.04	12.56	9.71
Merged-chrX-77517879-2	chrX	77517780	77517980	+	837.18335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	6653.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	6.46	16.1	4.56	5.23	12.27	25.71	13.62	8.27	17.7	14.56	15.58	12.53
Merged-chr10-75170603-3	chr10	75170492	75170692	+	837.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 16 of 22)	intron (NM_001081412, intron 16 of 22)	-41481.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	11.31	9.06	9.13	10.05	8.59	5.96	11.63	12.17	17.51	13.56	20.6	15.04
Merged-chr7-112183435-2	chr7	112183333	112183533	+	837.174988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23951.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	14.13	6.79	12.55	6.84	9.82	5.96	2.33	9.64	12.59	6.03	8.04	5.95
Merged-chr5-123664876-3	chr5	123664783	123664983	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	19478.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	12.11	11.07	14.26	4.83	9.0	14.42	8.64	12.48	17.9	8.54	15.07	13.16
Merged-chr11-77441813-3	chr11	77441724	77441924	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22089.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.65	3.02	9.7	4.02	15.96	12.23	8.3	21.03	18.1	9.04	14.57	15.98
Merged-chr17-31680613-3	chr17	31680531	31680731	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278570, intron 2 of 2)	intron (NM_001278570, intron 2 of 2)	2700.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	21.8	14.84	22.25	11.26	9.82	16.62	19.27	11.52	6.49	6.53	13.06	8.14
Merged-chr15-36649930-3	chr15	36649835	36650035	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40962.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	7.67	7.04	11.98	10.05	14.73	16.31	10.63	13.99	23.41	12.05	18.59	13.78
Merged-chr7-43562917-3	chr7	43562798	43562998	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	528.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	3.23	6.04	14.83	4.02	2.86	14.11	9.63	6.62	12.19	13.05	11.56	20.99
Merged-chr8-108915642-2	chr8	108915545	108915745	+	837.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-21215.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	18.17	7.8	10.27	10.46	15.96	7.21	6.31	15.14	4.72	3.01	0.0	2.82
Merged-chr13-54475928-2	chr13	54475814	54476014	+	837.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-7074.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	3.23	2.52	2.28	5.63	4.5	5.64	3.99	5.8	16.52	18.08	21.1	13.78
Merged-chr11-70074842-2	chr11	70074736	70074936	+	837.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17808.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	4.44	4.78	5.13	4.02	7.36	7.53	1.99	4.88	15.34	13.56	5.02	3.13
Merged-chr2-71043514-3	chr2	71043398	71043598	+	837.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12108.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	8.48	7.29	14.26	11.26	18.0	17.25	21.59	21.45	13.96	7.53	11.56	16.92
Merged-chr11-67125683-2	chr11	67125582	67125782	+	837.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5602.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	10.5	11.82	11.41	23.33	11.45	15.68	16.61	33.31	2.95	6.03	1.51	3.76
Merged-chr15-80225387-2	chr15	80225309	80225509	+	837.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8671.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	6.06	4.02	5.7	4.02	7.77	13.8	4.32	11.52	21.83	13.56	17.08	11.9
Merged-chr19-44344020-2	chr19	44343931	44344131	+	837.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183216, intron 5 of 5)	intron (NM_183216, intron 5 of 5)	10705.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.85	1.76	2.28	3.62	9.41	9.41	5.31	5.24	19.08	23.1	22.61	15.66
Merged-chr13-48227872-3	chr13	48227774	48227974	+	837.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102303, intron 1 of 2)	CpG	-33553.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	11.71	2.52	1.71	14.48	21.27	28.22	21.92	32.8	22.23	14.06	34.17	15.98
Merged-chr4-72396653-2	chr4	72396536	72396736	+	837.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	195392.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	1.62	2.52	1.71	4.42	2.86	2.82	11.63	12.36	11.41	8.54	9.55	8.14
Merged-chr11-19018208-3	chr11	19018107	19018307	+	837.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 1 of 11)	intron (NM_010789, intron 1 of 11)	762.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	12.52	7.55	8.56	12.07	13.5	13.17	12.29	22.63	15.74	9.54	16.58	6.58
Merged-chr6-98105477-2	chr6	98105383	98105583	+	837.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113700.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.86	4.53	10.84	4.02	13.5	11.29	14.28	10.79	9.64	4.52	12.06	6.58
Merged-chrX-48525583-2	chrX	48525494	48525694	+	837.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	6309.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	17.36	12.07	13.12	8.04	13.5	8.47	9.63	15.17	6.69	2.51	5.02	10.65
Merged-chr17-25320802-3	chr17	25320700	25320900	+	837.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053260, intron 3 of 5)	intron (NM_053260, intron 3 of 5)	2146.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	10.09	10.82	37.65	25.74	24.55	22.26	21.26	29.16	9.64	10.54	10.55	9.71
Merged-chr14-118692023-3	chr14	118691876	118692076	+	837.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	14243.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	9.29	17.36	19.4	11.66	8.59	7.84	6.31	4.57	17.51	23.6	27.13	13.47
Merged-chr15-25751697-1	chr15	25751597	25751797	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-1509.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	8.48	3.02	3.42	12.07	5.73	7.84	8.64	21.45	6.88	2.01	6.03	3.76
Merged-chr1-180226001-3	chr1	180225908	180226108	+	837.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011183)	TTS (NM_011183)	19942.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	19.38	8.55	6.85	10.05	17.18	29.79	9.97	18.81	12.0	15.06	24.12	12.53
Merged-chr8-33897910-1	chr8	33897810	33898010	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	31953.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.42	0.0	0.0	0.4	0.0	3.14	3.32	3.14	13.37	4.02	6.53	11.59
Merged-chr17-28327828-1	chr17	28327728	28327928	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-643.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	2.42	4.28	2.85	1.21	11.05	1.57	7.97	4.12	7.08	2.51	3.52	4.7
Merged-chr11-9338296-1	chr11	9338196	9338396	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 27 of 61)	L5|LINE|RTE-X	146354.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	1.21	0.5	2.28	2.82	6.14	3.45	4.65	9.0	5.7	3.01	1.51	4.7
Merged-chr13-99218612-2	chr13	99218513	99218713	+	837.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	33790.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	16.15	9.06	17.11	10.86	13.5	3.76	10.96	14.89	14.16	5.52	8.54	5.01
Merged-chr18-25461301-2	chr18	25461200	25461400	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033532, intron 10 of 10)	intron (NM_001033532, intron 10 of 10)	218448.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.62	4.53	18.25	6.44	7.77	11.6	11.29	8.24	21.83	16.57	14.07	3.76
Merged-chr7-3816650-1	chr7	3816550	3816750	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	28401.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0.0	0.0	0.0	0.8	0.41	1.25	0.0	2.75	3.34	4.52	13.06	12.84
Merged-chr12-111309348-1	chr12	111309248	111309448	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 21 of 36)	intron (NM_183016, intron 21 of 36)	38252.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.4	1.51	0.0	2.82	0.41	1.88	5.31	8.38	3.54	1.51	5.53	5.33
Merged-chr19-38361705-1	chr19	38361605	38361805	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-34275.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	8.08	4.53	4.56	2.41	2.86	0.0	12.95	10.74	2.56	0.5	7.54	2.82
Merged-chr19-21384083-2	chr19	21384015	21384215	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	88546.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.81	1.01	1.14	2.82	4.91	5.64	17.94	11.36	7.28	11.55	12.56	6.27
Merged-chr10-13028370-1	chr10	13028270	13028470	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19920.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	7.67	2.01	2.28	13.67	8.59	9.72	10.3	23.38	5.11	7.03	8.54	5.64
Merged-chr13-83076692-1	chr13	83076592	83076792	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-378359.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	3.63	2.52	0.0	2.41	12.68	2.2	2.33	10.26	1.18	3.51	1.51	6.27
Merged-chr15-101336998-1	chr15	101336898	101337098	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32354.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	4.44	3.52	15.4	2.82	12.27	5.96	10.3	13.96	8.26	6.53	5.02	8.46
Merged-chr6-55056250-1	chr6	55056150	55056350	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_180678, intron 7 of 16)	MER3|DNA|hAT-Charlie	18249.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.81	2.01	2.85	4.83	2.05	0.63	0.66	0.93	16.13	8.54	15.58	13.47
Merged-chr13-18782313-1	chr13	18782213	18782413	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	65021.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.04	2.77	15.97	9.65	8.59	12.23	9.3	12.62	2.16	5.02	5.53	4.07
Merged-chrX-167203109-1	chrX	167203009	167203209	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6109.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	7.27	6.54	5.13	1.61	2.45	10.35	3.32	7.29	7.28	1.51	10.55	8.14
Merged-chr4-107731088-1	chr4	107730988	107731188	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46926.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.0	0.0	0.0	0.0	4.5	5.96	8.3	7.74	0.2	2.01	0.0	2.51
Merged-chr11-5261222-1	chr11	5261122	5261322	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032396, intron 1 of 8)	CpG	388.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	6.06	6.79	6.85	5.63	10.23	4.7	7.64	8.33	14.95	13.56	15.58	7.83
Merged-chr10-77540002-1	chr10	77539902	77540102	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	9654.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.4	4.02	3.99	3.22	4.09	0.63	7.31	2.66	3.54	3.01	2.01	4.7
Merged-chr11-98795813-3	chr11	98795724	98795924	+	837.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361932, exon 1 of 3)	5' UTR (NM_001361932, exon 1 of 3)	308.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	8.88	7.29	10.27	6.03	12.68	20.38	7.64	5.97	12.19	16.07	13.57	12.84
Merged-chr2-126491637-2	chr2	126491549	126491749	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080944)	promoter-TSS (NM_001080944)	-96.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.06	8.05	4.56	16.49	12.68	25.09	13.62	22.43	10.03	7.03	12.06	8.77
Merged-chr16-57431476-1	chr16	57431376	57431576	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	78199.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	2.28	0.0	1.23	0.0	0.0	0.79	17.51	10.54	15.58	3.76
Merged-chr18-69627820-2	chr18	69627718	69627918	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	281658.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	8.08	6.54	7.42	9.65	2.45	8.47	2.33	9.64	10.42	6.53	17.08	8.46
Merged-chr10-7923650-3	chr10	7923552	7923752	+	836.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	29413.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	10.5	11.07	12.55	10.05	18.0	19.13	9.97	21.22	21.64	12.05	10.05	7.52
Merged-chr19-40660637-4	chr19	40660518	40660718	+	836.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	848.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.08	8.8	15.97	9.25	9.0	7.53	3.99	7.07	11.21	12.55	10.55	10.96
Merged-chr10-14188151-3	chr10	14188030	14188230	+	836.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	221751.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.08	10.06	9.7	6.44	11.86	8.78	5.98	6.22	17.7	9.04	7.54	8.14
Merged-chr19-32278018-2	chr19	32277918	32278118	+	836.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-67005.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	9.29	5.53	6.85	4.83	18.0	12.86	12.29	15.45	11.21	4.02	9.04	5.33
Merged-chr19-10740899-2	chr19	10740798	10740998	+	836.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027805)	promoter-TSS (NR_027805)	-49.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	17.36	20.12	9.7	4.02	8.18	20.07	6.31	3.81	24.0	13.56	14.57	14.72
Merged-chr1-172455500-2	chr1	172455418	172455618	+	836.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19842.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	2.42	3.27	0.0	6.44	6.95	5.96	15.28	20.27	8.65	3.51	15.58	8.77
Merged-chr12-34486133-2	chr12	34486034	34486234	+	836.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	42755.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.44	1.76	10.27	15.69	5.73	6.9	4.32	6.9	12.19	7.53	19.09	10.96
Merged-chr6-51663377-3	chr6	51663255	51663455	+	836.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	118062.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.42	5.28	13.12	12.47	9.0	2.2	7.64	7.68	24.39	12.05	15.07	10.34
Merged-chr3-144699780-3	chr3	144699679	144699879	+	836.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	20556.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	11.71	7.04	2.28	4.42	6.14	11.92	5.98	14.38	14.75	13.05	13.57	8.77
Merged-chr10-30718329-3	chr10	30718225	30718425	+	836.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-62458.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.42	5.03	15.97	13.27	8.59	6.27	12.62	13.6	10.62	7.03	12.06	13.16
Merged-chr2-12053928-2	chr2	12053819	12054019	+	836.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247327.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.02	7.8	2.85	7.64	22.09	9.09	9.63	7.93	12.0	21.59	13.57	7.21
Merged-chr14-67933280-3	chr14	67933166	67933366	+	836.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	CpG	306.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	8.48	13.33	10.84	11.66	16.36	18.81	12.62	11.3	14.95	11.55	14.07	8.46
Merged-chr2-102898841-3	chr2	102898785	102898985	+	836.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2780.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.85	6.04	0.0	5.23	27.41	16.62	16.28	21.17	6.69	11.55	14.57	9.71
Merged-chr14-102907112-3	chr14	102907024	102907224	+	836.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75508.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	10.9	7.29	14.83	20.11	15.14	17.25	14.95	25.18	15.34	15.06	24.62	5.95
Merged-chr6-120023928-3	chr6	120023809	120024009	+	836.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198703, intron 1 of 27)	L3|LINE|CR1	10402.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	8.88	7.29	12.55	10.46	7.77	11.29	1.33	12.62	13.77	8.03	5.53	10.96
Merged-chr11-37136648-2	chr11	37136556	37136756	+	836.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-192415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	1.21	4.53	0.0	4.83	11.45	3.14	1.99	10.54	10.62	10.54	18.59	8.46
Merged-chr4-156032149-3	chr4	156032040	156032240	+	836.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5818.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	5.65	10.56	9.7	11.26	3.27	6.9	7.31	11.47	14.16	10.54	18.09	10.34
Merged-chr19-53170850-3	chr19	53170747	53170947	+	836.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	26850.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	1.62	9.56	14.26	8.45	6.14	9.09	6.98	16.23	6.88	6.53	15.58	9.71
Merged-chr14-31337531-3	chr14	31337424	31337624	+	836.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360187, intron 1 of 20)	intron (NM_001360187, intron 1 of 20)	886.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	14.54	7.55	3.42	1.21	6.95	10.03	5.65	13.21	16.33	12.05	8.54	11.9
Merged-chr17-30550180-2	chr17	30550080	30550280	+	836.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	B3A|SINE|B2	26107.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	24.23	22.13	29.66	34.99	0.82	4.39	7.97	5.13	6.49	3.01	9.55	1.57
Merged-chr11-114852519-3	chr11	114852398	114852598	+	836.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147217, intron 1 of 3)	CpG	468.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	6.46	10.82	9.13	11.66	9.82	7.21	16.28	8.94	11.6	10.54	10.55	6.89
Merged-chr3-86884178-2	chr3	86884082	86884282	+	836.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	36702.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	10.5	6.54	30.23	15.28	11.86	12.54	5.65	7.29	0.0	0.0	1.0	0.94
Merged-chr3-21953635-3	chr3	21953520	21953720	+	836.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123032.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.88	4.28	14.26	11.26	17.59	8.15	15.61	17.27	22.23	15.57	30.15	9.4
Merged-chr10-69888626-3	chr10	69888528	69888728	+	836.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-36904.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	12.11	3.77	11.41	8.04	27.0	19.76	17.61	35.58	17.9	12.05	41.71	12.22
Merged-chr8-70720863-3	chr8	70720727	70720927	+	836.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195253, intron 2 of 3)	B1_Mm|SINE|Alu	2284.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	5.65	9.06	14.83	8.85	18.82	29.48	19.6	7.01	10.03	7.03	15.07	10.65
Merged-chr16-18423274-3	chr16	18423173	18423373	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-3144.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	10.5	7.55	25.67	22.93	19.64	14.74	12.29	26.97	15.14	8.54	7.54	9.08
Merged-chrX-99067413-3	chrX	99067302	99067502	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 5 of 13)	intron (NM_199018, intron 5 of 13)	24821.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	14.94	3.27	16.54	10.86	11.05	14.74	10.63	19.6	13.77	8.03	16.08	9.71
Merged-chr4-59594703-3	chr4	59594540	59594740	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	13077.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	2.83	8.05	2.85	3.22	1.23	3.45	2.99	5.78	7.47	9.04	9.04	6.58
Merged-chr4-11235691-3	chr4	11235587	11235787	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159595, intron 8 of 26)	intron (NM_001159595, intron 8 of 26)	18572.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	16.96	6.04	7.99	22.52	3.27	2.82	8.3	18.95	16.92	9.04	26.13	8.46
Merged-chrX-169326144-3	chrX	169326054	169326254	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361166, intron 3 of 5)	RMER6A|LTR|ERVK	5759.0	NM_001361166	101055907.0		NM_001361166		Gm15246	-	predicted gene 15246	protein-coding	4.85	6.04	11.41	8.85	9.82	8.15	8.3	11.75	15.74	15.57	17.08	5.33
Merged-chr12-80922161-3	chr12	80922134	80922334	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	2213.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	12.92	8.8	12.55	5.63	7.77	7.84	6.64	12.25	10.82	12.05	9.55	8.77
Merged-chr14-67184206-2	chr14	67184089	67184289	+	836.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49103.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	3.23	6.04	2.28	4.83	12.68	15.99	13.29	14.16	6.69	12.55	16.58	15.98
Merged-chr16-77393688-1	chr16	77393588	77393788	+	836.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	64360.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.85	6.29	6.85	11.26	9.82	0.31	5.98	10.18	7.47	1.51	2.51	1.25
Merged-chr5-23878456-1	chr5	23878356	23878556	+	836.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	26223.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	6.86	4.28	10.27	6.44	4.5	3.76	7.31	2.86	15.14	5.02	12.06	10.96
Merged-chr12-4151202-3	chr12	4151106	4151306	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	17053.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	12.92	8.05	22.82	10.46	24.55	5.33	27.57	46.12	9.64	3.01	11.56	15.04
Merged-chr2-59042854-3	chr2	59042760	59042960	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	117823.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	13.33	9.06	3.99	1.61	8.18	11.6	12.95	6.84	18.1	17.07	8.54	15.98
Merged-chr8-68557092-1	chr8	68556992	68557192	+	836.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001252623, exon 4 of 11)	5' UTR (NM_001252623, exon 4 of 11)	178054.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	3.63	4.02	4.56	4.83	6.14	6.9	4.65	9.76	0.0	1.51	2.01	1.57
Merged-chr14-65342742-2	chr14	65342642	65342842	+	836.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15934.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	12.92	3.27	11.41	12.87	11.05	4.08	13.29	13.04	5.7	7.03	8.54	5.64
Merged-chr2-166703129-2	chr2	166703014	166703214	+	836.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	10718.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.06	12.58	17.11	8.45	19.23	19.13	21.92	14.61	26.95	10.54	6.53	6.27
Merged-chr17-33978096-2	chr17	33977990	33978190	+	836.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_004446, intron 2 of 5)	CpG-6269	701.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	18.17	20.88	14.83	9.65	9.0	13.8	16.94	2.38	11.41	11.05	15.07	6.27
Merged-chr7-3643641-3	chr7	3643546	3643746	+	836.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1623.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	13.73	12.83	7.99	19.31	8.18	9.72	12.95	13.29	14.95	14.56	14.07	12.22
Merged-chr12-3861898-3	chr12	3861810	3862010	+	836.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045884, exon 2 of 4)	non-coding (NR_045884, exon 2 of 4)	334.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	11.31	3.77	9.13	10.46	13.5	14.74	14.95	18.64	28.13	10.04	18.59	10.96
Merged-chr14-54386159-1	chr14	54386059	54386259	+	836.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23313.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.21	0.5	2.28	10.05	11.86	7.21	10.96	18.0	5.31	8.03	2.01	1.25
Merged-chr18-77801120-3	chr18	77801025	77801225	+	836.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-4735.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	14.13	11.32	14.83	7.24	15.96	23.2	14.62	12.48	10.82	15.57	9.04	11.28
Merged-chr1-80722854-3	chr1	80722760	80722960	+	836.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35693.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	11.31	6.54	5.7	10.05	9.82	16.31	10.3	11.97	16.33	15.57	18.09	11.59
Merged-chr3-8998515-3	chr3	8998416	8998616	+	836.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5688.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	10.5	5.28	13.69	6.84	12.68	8.15	14.28	11.41	14.16	14.06	9.55	13.78
Merged-chr16-90456860-3	chr16	90456699	90456899	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	70402.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.23	7.55	10.27	6.84	13.91	8.47	11.29	9.17	13.57	11.05	9.04	7.21
Merged-chr13-52820494-2	chr13	52820408	52820608	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63303.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	4.85	6.04	9.13	2.01	20.05	20.38	25.24	21.2	8.46	10.54	12.56	10.96
Merged-chr9-40575228-2	chr9	40575145	40575345	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43862.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.63	5.03	6.85	3.22	9.0	9.09	4.32	2.44	49.17	39.67	47.74	27.57
Merged-chrX-21740055-2	chrX	21739967	21740167	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020049, intron 13 of 13)	intron (NM_020049, intron 13 of 13)	25167.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	4.85	8.05	7.99	7.24	20.05	15.05	12.29	22.01	12.78	10.04	5.53	7.83
Merged-chr2-32744827-3	chr2	32744750	32744950	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001252547, exon 3 of 11)	exon (NM_001252547, exon 3 of 11)	-3834.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	10.9	10.82	10.27	8.45	11.86	8.47	4.65	13.49	4.33	1.51	19.6	8.77
Merged-chr13-63563278-2	chr13	63563195	63563395	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008957, intron 2 of 23)	CpG	2440.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.44	16.1	3.42	6.44	8.59	10.03	16.94	8.92	12.98	3.51	5.02	10.65
Merged-chr6-71878170-2	chr6	71878044	71878244	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30618.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	8.08	2.26	1.14	12.47	0.82	4.39	4.32	6.62	4.52	1.51	6.03	5.01
Merged-chr10-122597490-1	chr10	122597390	122597590	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27599.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	1.62	0.25	2.28	4.42	2.05	1.25	7.97	6.06	3.74	5.52	4.02	4.07
Merged-chr19-53423582-3	chr19	53423492	53423692	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32958.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	10.5	9.81	12.55	11.26	20.86	19.44	20.26	10.37	10.03	10.04	9.04	2.82
Merged-chr17-45590784-1	chr17	45590684	45590884	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	1609.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.46	5.79	11.41	7.24	9.0	3.45	9.3	9.17	7.47	8.54	10.05	6.89
Merged-chr11-71888678-2	chr11	71888580	71888780	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	51442.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	4.04	3.52	14.26	13.67	9.0	2.82	5.98	9.36	7.67	3.51	11.05	5.33
Merged-chr18-42011072-3	chr18	42010962	42011162	+	836.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12013.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	6.86	12.58	10.27	8.85	8.59	21.01	7.64	22.85	21.83	17.07	15.58	7.52
Merged-chr2-43555779-3	chr2	43555676	43555876	+	836.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	451.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	10.5	11.07	5.7	11.26	11.45	7.21	5.31	13.91	20.46	16.57	14.07	8.77
Merged-chr3-10419098-3	chr3	10418975	10419175	+	836.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21055.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	3.63	9.31	7.42	18.1	16.77	16.31	18.27	28.96	13.77	9.54	13.06	9.08
Merged-chr18-84092362-4	chr18	84092335	84092535	+	836.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	4277.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	8.88	3.77	1.14	6.84	3.27	4.7	8.3	3.06	5.7	7.53	9.55	5.95
Merged-chr10-41682930-3	chr10	41682823	41683023	+	836.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 5 of 47)	B3A|SINE|B2	33540.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	17.36	14.09	9.13	14.08	14.73	15.99	7.97	14.5	13.18	15.06	13.57	10.65
Merged-chr7-88318686-3	chr7	88318583	88318783	+	836.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40598.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	9.69	9.56	17.11	9.65	17.18	8.15	16.28	12.34	8.06	10.54	12.56	1.57
Merged-chr2-58155960-8	chr2	58155917	58156117	+	836.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	4105.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	2.83	3.02	9.13	0.8	5.32	4.39	4.65	6.0	8.65	7.53	4.52	10.02
Merged-chr11-103419823-2	chr11	103419735	103419935	+	836.43335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7171.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.25	4.78	18.25	2.82	8.18	11.92	11.96	8.5	9.83	10.54	12.06	15.04
Merged-chr8-70373061-3	chr8	70372983	70373183	+	836.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016685)	promoter-TSS (NM_016685)	-465.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	10.9	2.52	13.12	10.05	11.86	10.35	7.97	11.41	11.01	13.56	21.61	11.59
Merged-chr8-115537021-2	chr8	115536925	115537125	+	836.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	169869.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	17.77	9.31	6.28	4.83	12.68	16.31	8.64	6.34	7.08	14.56	7.54	3.45
Merged-chr7-108930162-2	chr7	108930070	108930270	+	836.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175532)	promoter-TSS (NM_175532)	-12.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	8.08	1.76	3.42	0.8	3.27	4.39	4.32	7.07	15.93	13.56	30.65	13.78
Merged-chr5-136919097-3	chr5	136918979	136919179	+	836.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015555)	promoter-TSS (NR_015555)	-67.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	5.65	3.02	6.85	10.46	11.05	10.03	3.65	8.07	15.54	11.55	16.58	19.42
Merged-chr7-122099321-3	chr7	122099231	122099431	+	836.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153798, intron 1 of 3)	intron (NR_153798, intron 1 of 3)	2517.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	12.11	11.57	0.57	4.83	6.55	6.27	6.64	6.9	10.23	18.58	10.55	5.64
Merged-chr16-92714983-3	chr16	92714890	92715090	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-17661.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	9.69	8.3	10.27	2.82	9.41	10.66	9.97	10.99	17.7	17.07	11.05	16.92
Merged-chr14-62354582-3	chr14	62354479	62354679	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22511.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	8.88	16.85	4.56	10.05	10.23	7.84	10.96	9.08	15.93	6.03	7.54	10.02
Merged-chr8-14873208-3	chr8	14873117	14873317	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15319.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	12.52	6.54	31.95	17.29	15.14	8.78	9.97	28.54	22.03	12.05	27.64	11.9
Merged-chr2-117852127-3	chr2	117852029	117852229	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30201.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	11.31	8.05	5.7	10.46	13.91	11.92	3.65	14.72	23.6	14.06	18.09	7.83
Merged-chr19-37307976-2	chr19	37307875	37308075	+	836.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031156, intron 10 of 23)	L1M5|LINE|L1	22638.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	6.86	4.53	5.7	5.23	15.14	6.27	8.97	8.66	12.19	7.53	12.06	4.39
Merged-chr15-27718912-3	chr15	27718846	27719046	+	836.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A|LTR|ERVK	-37404.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	10.09	11.57	6.85	6.84	6.95	8.78	4.98	7.63	7.67	5.52	8.54	5.64
Merged-chr19-58214034-2	chr19	58213959	58214159	+	836.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-82145.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	10.09	7.29	18.83	11.66	9.41	5.33	21.26	19.79	0.98	1.51	6.03	2.51
Merged-chr17-27083802-2	chr17	27083703	27083903	+	836.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080553, intron 3 of 57)	intron (NM_080553, intron 3 of 57)	-7442.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	10.9	8.3	13.69	17.7	18.82	25.09	15.61	24.59	1.57	1.0	8.04	2.19
Merged-chr5-92489156-1	chr5	92489056	92489256	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	16501.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.44	3.77	4.56	1.21	13.09	8.78	7.64	11.64	4.72	2.51	14.07	4.7
Merged-chr11-118149717-1	chr11	118149617	118149817	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20498.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.81	1.01	0.0	0.0	9.0	8.15	3.99	5.92	5.11	10.04	2.51	1.57
Merged-chr14-14351742-3	chr14	14351636	14351836	+	836.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 9 of 11)	intron (NM_008369, intron 9 of 11)	5241.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	3.63	9.81	10.27	7.24	5.32	10.03	9.63	8.89	15.93	14.06	7.03	8.46
Merged-chr17-45752265-2	chr17	45752173	45752373	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17767.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	8.08	4.53	8.56	0.0	15.14	11.29	13.95	10.63	10.42	11.55	18.59	9.08
Merged-chr19-28454844-1	chr19	28454744	28454944	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-223380.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	4.85	4.28	4.56	16.09	7.77	5.96	13.95	17.27	2.16	4.02	7.54	0.94
Merged-chr4-16103117-1	chr4	16103017	16103217	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60526.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	1.62	3.27	3.99	2.41	9.0	6.27	11.96	12.87	7.08	0.5	3.52	6.89
Merged-chr12-85686965-5	chr12	85686846	85687046	+	836.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016767, exon 1 of 3)	exon (NM_016767, exon 1 of 3)	226.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.63	13.58	10.84	12.87	7.36	12.86	13.62	7.37	11.01	18.58	13.06	11.59
Merged-chr2-151563714-2	chr2	151563616	151563816	+	836.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8907.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	10.9	14.84	20.54	28.56	12.68	6.59	9.63	14.5	7.08	7.03	1.0	4.07
Merged-chr6-108213797-3	chr6	108213679	108213879	+	836.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 1 of 61)	intron (NM_010585, intron 1 of 61)	683.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	10.9	6.04	3.42	5.63	11.45	8.15	3.65	7.79	15.34	11.55	8.04	11.9
Merged-chr17-56808722-3	chr17	56808608	56808808	+	836.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	22300.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	16.96	4.28	7.99	7.64	8.18	10.03	4.65	7.82	19.67	22.09	26.63	12.22
Merged-chr1-136683332-3	chr1	136683234	136683434	+	836.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-62.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	15.75	6.54	11.41	10.05	12.27	14.11	8.64	7.91	16.13	31.63	24.12	14.72
Merged-chr18-65382011-1	chr18	65381911	65382111	+	836.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 1 of 12)	intron (NM_001037294, intron 1 of 12)	11877.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	8.08	6.04	4.56	6.03	10.23	10.35	4.98	7.74	10.42	3.01	4.02	4.07
Merged-chr14-47647928-2	chr14	47647824	47648024	+	836.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1387.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	10.9	6.04	9.7	10.86	13.5	14.42	3.65	8.94	9.64	9.54	13.57	3.76
Merged-chr9-118557080-2	chr9	118556974	118557174	+	836.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-49635.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.08	6.79	10.84	16.09	13.91	31.67	24.58	38.92	4.13	3.51	5.02	0.63
Merged-chr5-16468396-2	chr5	16468295	16468495	+	836.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-85100.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	7.67	3.77	8.56	6.44	9.82	3.14	5.65	13.35	6.69	6.53	19.09	10.34
Merged-chr14-62252173-3	chr14	62252071	62252271	+	836.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40808.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	10.5	12.32	6.85	10.46	8.18	11.29	5.65	7.54	13.77	8.54	13.57	5.95
Merged-chr9-37530209-3	chr9	37530096	37530296	+	836.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2107.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	10.9	12.83	7.99	13.27	5.73	9.09	11.96	9.62	13.37	6.53	11.05	9.08
Merged-chr13-58544237-3	chr13	58544160	58544360	+	836.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66617.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	17.36	9.56	8.56	10.05	7.36	7.21	8.3	8.27	13.96	15.57	21.1	9.4
Merged-chr8-83900026-3	chr8	83899923	83900123	+	836.214294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-75.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	18.98	5.53	8.56	15.69	2.86	12.54	16.28	15.73	13.57	9.04	7.54	6.58
Merged-chrX-74075054-1	chrX	74074954	74075154	+	836.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081979, intron 1 of 2)	intron (NM_001081979, intron 1 of 2)	10636.0	NM_010788	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	2.42	3.52	3.42	4.02	11.86	21.01	7.97	10.49	9.44	5.02	12.06	2.82
Merged-chr17-40869374-3	chr17	40869272	40869472	+	836.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67C|LTR|ERV1	11186.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	14.54	14.09	12.55	15.69	4.91	4.7	7.64	8.38	9.24	13.05	14.07	5.95
Merged-chr5-100550472-1	chr5	100550372	100550572	+	836.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21733.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.63	5.28	3.42	4.83	0.82	4.7	1.33	0.81	17.11	12.55	14.57	9.71
Merged-chr5-96948955-2	chr5	96948854	96949054	+	836.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27682.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.46	4.53	17.11	11.26	14.32	13.17	15.61	12.9	4.92	2.51	11.56	5.95
Merged-chr14-46955220-2	chr14	46955134	46955334	+	836.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105813)	promoter-TSS (NR_105813)	-306.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	4.44	4.02	4.56	14.08	6.95	6.27	5.31	9.73	15.93	17.07	19.09	12.53
Merged-chr15-95883814-2	chr15	95883706	95883906	+	836.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-53734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.06	4.02	7.99	1.21	6.95	12.86	7.97	11.27	11.41	11.55	20.1	8.46
Merged-chr14-61678299-3	chr14	61678213	61678413	+	836.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	4060.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	11.71	9.31	5.7	5.23	8.59	15.99	6.64	9.81	14.75	8.03	15.07	7.83
Merged-chr5-104982680-3	chr5	104982580	104982780	+	836.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030239)	promoter-TSS (NM_030239)	37.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	8.48	5.28	6.85	8.85	11.05	11.6	8.3	11.55	17.11	17.07	18.09	11.28
Merged-chr3-131702081-2	chr3	131701979	131702179	+	836.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136047.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	6.86	4.53	6.28	5.23	6.55	11.6	5.31	8.07	25.77	20.59	15.07	10.34
Merged-chr1-153543682-2	chr1	153543586	153543786	+	836.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6028.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	11.71	6.29	9.13	20.51	9.41	10.98	10.96	17.44	7.67	9.04	11.05	4.07
Merged-chr7-30417802-4	chr7	30417744	30417944	+	836.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011662)	TTS (NM_011662)	2010.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	6.86	6.54	3.99	2.41	5.73	6.9	7.97	1.79	9.05	10.54	10.05	8.14
Merged-chr19-29442637-3	chr19	29442525	29442725	+	836.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	31706.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	12.92	10.82	19.4	8.85	16.77	8.78	13.29	15.28	20.06	17.57	9.04	5.64
Merged-chr13-24501644-4	chr13	24501551	24501751	+	836.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80538.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	8.48	7.29	3.42	5.63	6.14	7.53	6.31	5.94	8.46	12.05	4.02	7.83
Merged-chr11-85671320-1	chr11	85671220	85671420	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48424.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	10.09	3.02	9.7	3.22	5.73	12.23	7.64	9.42	3.34	3.01	10.05	7.52
Merged-chr12-103164736-2	chr12	103164661	103164861	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081017, intron 42 of 48)	intron (NM_001081017, intron 42 of 48)	77385.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	7.27	2.26	3.42	24.53	5.32	4.7	7.31	26.13	10.62	2.01	18.09	7.52
Merged-chr1-171632703-1	chr1	171632603	171632803	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_144539, exon 8 of 8)	3' UTR (NM_144539, exon 8 of 8)	9197.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.81	2.26	3.42	2.01	1.23	2.2	6.31	8.66	11.6	3.01	0.5	2.19
Merged-chr19-21035769-2	chr19	21035663	21035863	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68947.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.46	5.28	6.85	6.44	22.5	7.84	27.9	21.95	11.6	5.02	13.57	10.34
Merged-chr7-141195019-3	chr7	141194923	141195123	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	-120.0	NM_153777	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	10.9	13.33	7.99	4.02	8.59	9.09	5.31	6.5	23.6	16.57	16.58	10.65
Merged-chr6-5323508-1	chr6	5323408	5323608	+	836.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-25135.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.0	0.5	0.0	0.8	1.64	0.31	2.66	2.27	17.31	14.56	17.59	6.89
Merged-chr7-59322943-1	chr7	59322843	59323043	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_146211, intron 166 of 171)	ORR1F|LTR|ERVL-MaLR	24481.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	2.83	5.79	1.14	2.41	3.27	5.33	13.29	9.87	6.1	4.02	3.52	5.64
Merged-chr13-28870884-1	chr13	28870784	28870984	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	14538.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	2.42	2.77	4.56	2.41	9.41	10.66	11.63	12.11	1.38	0.0	0.5	1.25
Merged-chr8-68993506-3	chr8	68993357	68993557	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95279.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	9.29	7.29	7.42	8.04	12.27	11.92	11.96	16.96	8.85	13.05	10.55	5.33
Merged-chr8-80493033-1	chr8	80492933	80493133	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	4.02	6.28	4.83	7.77	2.82	1.33	6.34	2.95	5.02	2.01	3.76
Merged-chr19-32304250-2	chr19	32304133	32304333	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	45083.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.48	4.28	2.28	10.86	19.23	15.68	15.28	15.22	5.31	4.02	7.54	5.95
Merged-chr5-105498906-2	chr5	105498806	105499006	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-20565.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	10.09	9.31	10.27	9.65	15.14	16.93	14.62	23.41	5.31	1.51	5.53	2.19
Merged-chr7-101383533-1	chr7	101383433	101383633	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1993.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	13.73	12.32	8.56	2.41	27.41	28.85	10.3	10.4	24.0	27.62	24.12	12.53
Merged-chr11-100805657-1	chr11	100805557	100805757	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113563, intron 2 of 18)	intron (NM_001113563, intron 2 of 18)	16913.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	1.21	3.52	1.14	1.61	4.91	10.03	3.99	8.02	3.34	9.04	3.01	3.13
Merged-chr17-34115012-1	chr17	34114912	34115112	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_037970, exon 7 of 13)	non-coding (NR_037970, exon 7 of 13)	4888.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	10.09	8.55	2.28	2.41	1.64	11.6	2.99	1.35	6.69	6.03	10.55	4.39
Merged-chr13-92968630-2	chr13	92968526	92968726	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104678.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	10.9	16.85	10.84	19.71	0.41	2.82	0.66	2.36	16.72	23.6	30.15	9.71
Merged-chr5-29852679-1	chr5	29852579	29852779	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116743.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	5.25	3.02	9.13	12.07	8.18	2.51	18.6	14.33	6.69	4.52	5.53	5.95
Merged-chr5-92127001-1	chr5	92126901	92127101	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10724.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	2.83	0.0	1.14	0.0	0.82	3.14	9.97	6.73	0.2	1.0	3.52	2.51
Merged-chr6-109940566-1	chr6	109940466	109940666	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-704946.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	1.62	4.53	6.85	4.42	5.73	5.96	6.64	11.97	13.96	7.03	9.04	5.33
Merged-chr7-80180657-3	chr7	80180549	80180749	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6192.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.04	12.83	11.98	12.07	20.46	13.8	7.97	10.46	26.75	24.6	18.09	9.71
Merged-chr3-96230596-2	chr3	96230507	96230707	+	835.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	8520.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	5.65	5.53	9.13	12.87	6.55	7.53	7.31	12.87	13.96	13.05	15.07	8.77
Merged-chr15-81199614-3	chr15	81199570	81199770	+	835.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8817.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	5.25	9.81	8.56	10.46	5.32	3.14	9.63	4.63	16.52	13.05	6.03	7.52
Merged-chr6-149343966-3	chr6	149343831	149344031	+	835.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34517.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	5.65	3.77	9.13	10.05	19.64	14.74	6.64	15.76	28.13	25.61	42.71	26.0
Merged-chr8-75076529-2	chr8	75076390	75076590	+	835.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17128.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	1.62	4.53	4.56	4.02	10.64	5.64	6.31	4.74	9.05	10.04	13.57	10.02
Merged-chr10-70150895-3	chr10	70150792	70150992	+	835.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	53771.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	16.15	6.79	11.98	15.28	14.73	21.32	14.62	30.53	10.82	13.56	16.08	13.47
Merged-chr19-46709213-2	chr19	46709122	46709322	+	835.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020577, intron 4 of 10)	intron (NM_020577, intron 4 of 10)	1779.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	13.73	8.8	4.56	4.02	11.05	6.59	7.31	11.64	1.57	0.0	2.01	0.63
Merged-chr10-80139072-3	chr10	80138973	80139173	+	835.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036582, intron 1 of 10)	CpG	294.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	10.5	10.06	10.84	1.61	16.77	9.41	7.31	11.21	6.29	11.55	6.53	11.59
Merged-chr10-19957989-3	chr10	19957897	19958097	+	835.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	MLT1A0|LTR|ERVL-MaLR	23471.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	23.82	20.12	10.27	12.07	9.41	45.78	9.3	8.47	13.57	12.05	6.03	5.01
Merged-chr10-115311451-3	chr10	115311339	115311539	+	835.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4152.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	16.15	16.1	7.42	9.65	11.05	5.02	9.63	18.76	9.64	18.58	29.14	10.34
Merged-chr10-98708384-3	chr10	98708284	98708484	+	835.8555299999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-206258.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	13.33	7.8	19.4	6.84	9.41	8.78	8.97	19.63	21.05	18.08	16.58	5.95
Merged-chr11-83271487-5	chr11	83271377	83271577	+	835.84668	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15249.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	7.67	6.29	2.85	8.45	8.18	12.86	3.65	5.72	10.42	8.03	15.58	6.89
Merged-chr11-116436122-2	chr11	116436030	116436230	+	835.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1917.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	10.9	2.77	7.99	6.03	6.95	6.59	3.99	6.14	14.16	19.08	11.56	15.98
Merged-chr15-13172436-2	chr15	13172333	13172533	+	835.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	1242.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.85	2.26	6.85	4.02	16.77	14.42	8.3	8.97	9.64	13.05	20.1	6.58
Merged-chr4-102793025-2	chr4	102792919	102793119	+	835.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32884.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.04	3.77	7.42	16.49	13.09	2.82	7.64	12.84	10.42	6.53	14.57	10.65
Merged-chr3-40699035-2	chr3	40698931	40699131	+	835.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175515, intron 14 of 15)	intron (NM_175515, intron 14 of 15)	-9840.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.81	2.01	1.14	3.22	9.0	8.15	12.62	18.48	13.18	6.03	21.1	16.92
Merged-chr10-7470253-3	chr10	7470157	7470357	+	835.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3220.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	10.5	11.82	7.99	10.05	15.55	15.68	9.63	5.24	13.37	15.57	14.07	4.07
Merged-chr12-70494998-3	chr12	70494886	70495086	+	835.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	41832.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	8.88	9.06	0.0	6.03	6.14	11.6	4.98	9.36	13.77	3.51	15.58	9.08
Merged-chr17-50729745-2	chr17	50729664	50729864	+	835.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31083.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.83	2.52	6.85	7.24	14.32	17.87	11.96	17.3	7.08	11.05	14.07	7.83
Merged-chr11-61529563-3	chr11	61529472	61529672	+	835.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252188, intron 7 of 10)	intron (NM_001252188, intron 7 of 10)	24428.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	10.9	4.02	18.83	21.32	6.95	7.53	7.97	17.3	15.14	9.54	16.08	10.02
Merged-chr10-128803894-2	chr10	128803814	128804014	+	835.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358267)	promoter-TSS (NM_001358267)	53.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	10.5	6.54	2.28	4.83	8.18	6.9	8.3	4.35	8.26	11.55	3.52	5.01
Merged-chrX-10108730-2	chrX	10108630	10108830	+	835.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016911, intron 1 of 9)	intron (NM_016911, intron 1 of 9)	8931.0	NM_016911	51795.0	Mm.1927	NM_016911	ENSMUSG00000090084	Srpx	drs|drs-1|drs-2|mDRS-1|mDRS-2	sushi-repeat-containing protein	protein-coding	8.88	2.52	5.13	8.85	17.18	14.42	22.92	19.07	10.62	9.04	17.59	5.33
Merged-chrX-155596596-2	chrX	155596485	155596685	+	835.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093750, intron 1 of 2)	B3|SINE|B2	26742.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	8.08	3.27	9.7	11.26	5.32	5.02	10.96	12.87	13.77	16.07	8.54	6.27
Merged-chr6-26764911-3	chr6	26764822	26765022	+	835.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	833496.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	8.08	9.06	11.98	22.93	17.59	17.56	14.28	30.64	16.52	12.55	19.6	8.46
Merged-chr4-97910590-3	chr4	97910480	97910680	+	835.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	132954.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.67	6.29	17.11	14.08	10.23	18.5	10.3	16.09	16.33	6.03	10.55	8.14
Merged-chr10-60351462-3	chr10	60351369	60351569	+	835.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4618.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	15.75	12.07	18.25	8.45	9.82	7.84	13.62	13.82	16.92	9.04	11.05	8.14
Merged-chr10-68058131-1	chr10	68058031	68058231	+	835.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1|DNA|hAT-Charlie	78561.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.65	0.75	1.14	3.22	9.41	10.66	14.95	10.68	0.98	0.5	4.02	0.0
Merged-chr4-41073599-3	chr4	41073505	41073705	+	835.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24578.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	16.56	10.56	15.4	20.51	12.27	9.41	12.95	21.59	16.13	14.56	10.55	6.89
Merged-chr8-11462370-1	chr8	11462270	11462470	+	835.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15559.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.08	9.31	3.99	0.8	4.5	10.03	8.97	6.73	7.08	5.02	5.53	5.01
Merged-chr9-37230051-3	chr9	37229942	37230142	+	835.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	21726.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	10.5	11.07	15.97	13.27	9.41	11.6	12.62	19.6	15.14	8.03	7.54	10.02
Merged-chr9-107566993-2	chr9	107566910	107567110	+	835.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019742)	TTS (NM_019742)	-2153.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	7.67	6.04	0.57	3.22	8.18	12.23	3.32	7.15	13.18	16.57	19.09	13.16
Merged-chr5-112326778-2	chr5	112326663	112326863	+	835.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018783, intron 1 of 13)	intron (NM_018783, intron 1 of 13)	394.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	11.71	9.31	8.56	8.04	11.45	7.53	6.31	9.34	20.85	19.08	13.06	13.78
Merged-chr17-11352980-2	chr17	11352836	11353036	+	835.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 4 of 6)	MLTR25A|LTR|ERVK	512577.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	6.46	7.8	25.1	18.1	9.82	5.64	11.96	20.58	5.31	1.0	7.54	5.64
Merged-chr12-56336114-3	chr12	56336024	56336224	+	835.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9770.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	13.33	8.3	9.13	12.47	12.27	9.09	9.3	12.98	18.88	12.05	23.11	18.48
Merged-chr1-143814136-3	chr1	143814012	143814212	+	835.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	36834.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	6.06	4.28	5.13	5.63	9.82	5.64	2.33	12.03	11.8	18.08	18.59	9.71
Merged-chr4-102543123-2	chr4	102543037	102543237	+	835.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-26923.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.85	3.77	2.28	2.41	0.41	6.9	16.94	10.37	9.83	11.05	6.53	10.34
Merged-chrX-136270169-2	chrX	136270052	136270252	+	835.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009750)	promoter-TSS (NM_009750)	-101.0	NM_001110233	12070.0	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	3.63	6.04	3.42	10.05	8.59	6.9	11.63	8.13	9.44	6.03	16.58	7.52
Merged-chr1-84582028-3	chr1	84581937	84582137	+	835.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 3 of 12)	intron (NM_152915, intron 3 of 12)	-113802.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	11.71	10.31	7.42	6.84	6.55	17.87	5.65	13.74	12.98	8.54	27.13	8.14
Merged-chr3-8245875-3	chr3	8245807	8246007	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217191.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	10.9	12.07	12.55	16.09	32.32	15.05	23.92	19.26	12.0	12.05	13.57	25.37
Merged-chr1-156471730-3	chr1	156471654	156471854	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	RSINE1|SINE|B4	2574.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	1.21	6.29	15.4	6.84	6.95	7.21	15.28	12.79	10.82	16.57	22.61	12.22
Merged-chr4-7405288-3	chr4	7405214	7405414	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-155374.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	13.73	4.02	7.99	12.87	11.86	9.41	6.98	23.52	16.33	9.54	7.54	9.08
Merged-chr3-105059035-3	chr3	105058944	105059144	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5898.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.27	12.07	12.55	5.63	17.59	12.54	4.65	9.93	18.88	18.08	18.59	12.53
Merged-chr4-132946155-3	chr4	132946059	132946259	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23608.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	6.46	15.09	15.4	6.84	6.55	10.35	10.3	14.16	15.74	17.07	15.58	12.53
Merged-chr6-32591552-3	chr6	32591438	32591638	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3346.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	12.11	11.32	11.41	9.25	13.91	10.03	11.29	13.35	14.75	13.56	17.59	14.72
Merged-chr9-40808279-1	chr9	40808179	40808379	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7006.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	16.15	7.55	3.99	8.45	9.0	9.41	4.32	2.97	17.7	14.56	5.02	6.27
Merged-chr18-38923264-2	chr18	38923155	38923355	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-4556.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.23	1.76	10.27	10.05	8.18	5.02	24.91	29.69	1.57	1.51	9.04	3.76
Merged-chr3-27625407-1	chr3	27625307	27625507	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-40412.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	2.83	4.53	5.13	5.23	6.14	9.41	4.65	10.35	1.38	1.0	9.04	3.45
Merged-chr5-3309390-1	chr5	3309290	3309490	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34503.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	1.62	0.75	1.14	3.22	13.5	2.51	5.31	8.19	2.56	10.54	10.55	5.33
Merged-chr8-22873428-1	chr8	22873328	22873528	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	13889.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	8.08	5.03	6.85	1.61	2.45	11.92	4.32	9.17	4.13	5.02	8.04	1.25
Merged-chr8-33443730-2	chr8	33443644	33443844	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40567.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.0	0.5	0.0	3.22	0.82	1.57	4.32	3.95	29.11	21.59	34.17	30.7
Merged-chr3-108296558-2	chr3	108296462	108296662	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	12498.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	7.67	5.79	6.28	10.46	13.91	3.45	2.33	11.13	5.51	5.02	3.52	0.94
Merged-chr15-97487612-2	chr15	97487534	97487734	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	218188.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	3.63	2.01	3.99	3.22	4.91	11.92	2.66	8.5	7.28	4.52	8.04	5.33
Merged-chr4-118428729-3	chr4	118428597	118428797	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039175, intron 1 of 6)	intron (NM_001039175, intron 1 of 6)	604.0	NM_019422	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	10.5	10.06	11.41	10.05	7.77	13.48	8.3	10.54	17.51	7.53	12.56	14.1
Merged-chr13-112137042-2	chr13	112136953	112137153	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-151398.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.85	3.27	3.99	4.02	13.5	13.8	2.33	5.61	10.82	13.05	11.56	5.64
Merged-chr10-34127624-2	chr10	34127535	34127735	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175449, exon 1 of 2)	exon (NM_175449, exon 1 of 2)	337.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	14.13	10.56	15.97	8.85	11.86	10.98	9.97	13.43	17.31	20.59	14.07	13.16
Merged-chr13-109440550-2	chr13	109440450	109440650	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	115806.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	10.09	5.53	14.26	18.1	22.91	11.92	19.6	24.34	3.74	3.01	12.06	6.58
Merged-chr12-71294822-2	chr12	71294708	71294908	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15076.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	6.46	8.55	4.56	9.25	14.32	14.11	13.62	15.84	3.54	3.51	3.01	4.7
Merged-chr10-74104697-2	chr10	74104598	74104798	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142748, intron 3 of 25)	intron (NM_001142748, intron 3 of 25)	282831.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	5.65	2.77	3.42	3.22	8.59	21.01	8.3	14.41	9.05	11.05	18.59	2.82
Merged-chr8-108662947-1	chr8	108662847	108663047	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51697.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.04	4.02	3.42	4.83	9.0	5.96	10.96	13.77	9.64	11.05	5.02	3.76
Merged-chr2-174106802-2	chr2	174106682	174106882	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3569.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	8.48	10.82	26.24	14.08	3.68	0.63	2.66	4.37	9.44	5.02	16.08	8.46
Merged-chr6-49031430-3	chr6	49031323	49031523	+	835.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5095.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	5.65	8.05	9.7	6.44	18.41	9.41	7.64	20.8	18.1	7.53	9.55	12.53
Merged-chr10-5080180-5	chr10	5080068	5080268	+	835.473328	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079686, intron 37 of 54)	intron (NM_001079686, intron 37 of 54)	-11105.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	7.67	9.56	3.99	6.44	8.59	10.03	8.64	14.24	10.82	10.04	15.58	9.08
Merged-chr17-50130540-3	chr17	50130456	50130656	+	835.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	59941.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	8.88	6.29	13.69	3.22	15.96	13.8	15.94	22.15	15.34	17.07	18.59	6.58
Merged-chr6-31121209-3	chr6	31121112	31121312	+	835.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	L1MA4|LINE|L1	-58119.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	13.73	3.27	10.84	12.47	9.0	10.03	25.91	34.54	25.57	18.08	49.24	33.21
Merged-chr6-38892260-3	chr6	38892148	38892348	+	835.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16058.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.04	3.52	11.98	11.26	20.46	11.29	17.61	29.1	10.82	17.07	23.11	17.54
Merged-chrX-151496792-3	chrX	151496689	151496889	+	835.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-23883.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	15.34	6.29	10.27	17.7	5.32	10.03	11.96	20.64	13.77	5.02	7.03	9.4
Merged-chr2-114260599-3	chr2	114260520	114260720	+	835.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59188.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	7.27	8.3	5.13	13.67	11.86	12.54	10.63	18.73	7.67	12.55	18.09	3.76
Merged-chr8-119817713-3	chr8	119817639	119817839	+	835.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	(ACCTG)n|Simple_repeat|Simple_repeat	22840.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.67	4.02	19.97	14.48	10.64	7.53	10.3	24.95	16.92	15.57	24.12	8.14
Merged-chr7-128399686-3	chr7	128399583	128399783	+	835.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	MTC|LTR|ERVL-MaLR	18489.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	10.5	19.37	9.13	12.87	9.82	13.48	8.97	8.33	12.59	9.54	9.04	11.59
Merged-chr11-49720016-3	chr11	49719928	49720128	+	835.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7306.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	13.73	10.06	19.97	17.7	13.09	8.78	7.64	15.59	14.95	11.55	11.05	3.13
Merged-chr4-3770716-5	chr4	3770578	3770778	+	835.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	55714.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	1.62	2.77	7.99	5.63	9.41	6.9	5.98	6.14	16.13	14.56	8.04	6.58
Merged-chr1-71735735-3	chr1	71735641	71735841	+	835.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82406.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	5.65	3.52	11.98	8.45	13.09	4.7	13.95	10.09	10.42	11.55	23.11	11.59
Merged-chr10-7680205-2	chr10	7680100	7680300	+	835.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033219, exon 1 of 1)	non-coding (NR_033219, exon 1 of 1)	935.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	11.31	7.04	5.7	6.44	13.5	15.68	8.97	10.63	15.93	8.54	10.55	4.07
Merged-chr2-5507778-2	chr2	5507672	5507872	+	835.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	128382.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	6.86	7.04	8.56	5.63	11.45	13.17	12.95	14.92	10.23	17.57	11.05	3.45
Merged-chr4-46592263-1	chr4	46592163	46592363	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	9666.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	2.83	1.76	1.14	4.42	4.09	3.45	5.98	4.26	6.1	2.51	2.01	3.13
Merged-chr12-112722156-1	chr12	112722056	112722256	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024602)	promoter-TSS (NM_001024602)	-18.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	4.85	2.77	6.85	2.41	21.68	10.03	2.66	7.65	4.52	6.53	8.04	3.76
Merged-chr5-139470596-3	chr5	139470520	139470720	+	835.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001159908)	TTS (NM_001159908)	-10086.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	8.08	6.29	17.68	13.67	15.96	9.09	14.28	12.53	18.1	16.57	13.06	9.08
Merged-chr9-92490061-1	chr9	92489961	92490161	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178711, exon 8 of 9)	exon (NM_178711, exon 8 of 9)	32683.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	6.86	6.79	6.85	7.64	11.05	8.78	13.62	28.4	7.08	1.0	3.01	3.76
Merged-chr5-115313093-1	chr5	115312993	115313193	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131932, intron 1 of 1)	intron (NR_131932, intron 1 of 1)	11973.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	4.85	5.79	14.26	5.63	6.14	5.64	2.66	10.01	10.62	1.51	18.09	5.95
Merged-chr12-32897666-3	chr12	32897569	32897769	+	835.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56120.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	13.73	11.82	15.97	6.84	16.77	18.19	7.64	9.7	15.14	11.55	11.56	10.02
Merged-chrX-17520233-3	chrX	17520150	17520350	+	835.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	51757.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	18.17	15.85	8.56	11.26	13.91	13.8	5.65	27.28	18.29	8.54	13.57	10.02
Merged-chr1-62720956-3	chr1	62720895	62721095	+	835.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	17678.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	18.57	7.04	9.13	13.67	10.64	10.66	8.97	8.3	13.96	14.06	16.08	8.77
Merged-chr13-101540111-3	chr13	101539999	101540199	+	835.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142519.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	13.73	8.05	9.7	6.03	13.5	23.52	14.62	17.33	14.95	21.09	21.61	4.7
Merged-chr2-167996542-2	chr2	167996443	167996643	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080708, intron 4 of 21)	MLTR14|LTR|ERV1	14050.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	8.88	5.79	10.27	7.64	20.46	17.56	23.58	19.49	5.51	7.53	15.58	5.95
Merged-chr19-22930646-2	chr19	22930545	22930745	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035239, intron 21 of 24)	intron (NM_001035239, intron 21 of 24)	180040.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.81	1.01	0.0	0.0	7.36	14.42	9.3	12.76	8.65	3.51	7.03	8.46
Merged-chr2-93129442-2	chr2	93129349	93129549	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58099.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	2.02	5.28	15.97	8.45	9.0	7.84	6.64	9.08	18.29	11.55	16.58	15.35
Merged-chr9-70007997-1	chr9	70007897	70008097	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-4551.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.85	9.81	6.85	6.44	12.27	15.37	4.98	7.32	3.34	3.01	5.02	6.58
Merged-chr5-21711651-3	chr5	21711555	21711755	+	835.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10033.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	19.38	14.59	18.83	11.26	15.14	9.72	6.31	7.09	24.78	22.09	12.56	5.01
Merged-chr2-52858661-4	chr2	52858448	52858648	+	835.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	CpG	680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.65	5.79	6.28	2.82	6.14	10.03	5.98	9.11	8.06	5.52	7.03	5.01
Merged-chr4-32559997-2	chr4	32559898	32560098	+	835.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11664.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.08	5.03	8.56	8.04	9.0	12.23	15.61	12.25	14.36	9.04	16.58	5.01
Merged-chr1-139037310-3	chr1	139037221	139037421	+	835.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166501, intron 3 of 21)	intron (NM_001166501, intron 3 of 21)	59664.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	24.23	6.04	16.54	20.11	16.36	11.29	7.31	21.14	27.54	8.54	13.06	9.4
Merged-chr3-88465258-3	chr3	88465135	88465335	+	835.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4053.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	11.31	12.58	9.7	6.44	20.46	24.15	7.64	15.67	23.8	20.08	25.12	11.59
Merged-chr3-28146155-3	chr3	28146083	28146283	+	835.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-117031.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	16.96	19.12	7.99	10.86	9.41	8.47	7.64	13.09	20.65	16.07	11.56	9.4
Merged-chr6-124271273-3	chr6	124271178	124271378	+	835.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33373.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	13.73	12.83	11.98	26.95	16.36	10.66	6.98	11.89	8.85	14.56	13.57	9.71
Merged-chr12-35287760-3	chr12	35287664	35287864	+	835.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-92867.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	6.86	1.76	15.97	10.46	15.14	8.47	11.29	15.42	12.0	16.57	17.08	6.58
Merged-chr14-76467108-3	chr14	76467017	76467217	+	835.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-21319.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	12.92	11.07	25.1	11.66	15.55	13.8	9.97	21.95	13.57	10.04	28.64	13.16
Merged-chr2-91944386-3	chr2	91944296	91944496	+	835.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105965)	TTS (NR_105965)	534.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	14.54	10.56	16.54	5.63	15.14	18.5	2.99	17.92	8.06	7.53	10.05	8.46
Merged-chr7-27454926-3	chr7	27454778	27454978	+	835.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290525, intron 1 of 4)	L1MB8|LINE|L1	2460.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	18.17	8.05	9.7	14.48	14.32	4.7	1.99	8.66	8.65	9.54	13.06	11.9
Merged-chrX-68692020-3	chrX	68691914	68692114	+	835.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008031, intron 3 of 16)	intron (NM_008031, intron 3 of 16)	13473.0	NM_001290424	14265.0	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	11.71	8.05	19.97	12.87	12.27	9.72	13.95	9.11	8.06	5.52	16.58	8.77
Merged-chr9-120934145-3	chr9	120934026	120934226	+	835.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	CpG	548.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	10.5	17.61	7.42	8.04	10.23	23.83	5.98	8.13	19.08	22.09	12.56	5.95
Merged-chr7-83062228-3	chr7	83062107	83062307	+	835.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86263.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	10.9	5.03	11.98	25.34	4.91	12.23	17.27	10.6	10.03	11.05	17.08	10.34
Merged-chr10-66930171-2	chr10	66930059	66930259	+	835.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-9775.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	4.44	5.53	7.42	7.24	12.27	11.6	8.3	6.14	19.67	13.56	14.57	2.19
Merged-chr14-74855593-3	chr14	74855457	74855657	+	835.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	RSINE1|SINE|B4	92320.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	16.15	10.31	46.78	11.66	15.55	14.42	5.98	13.49	15.93	21.09	8.04	5.95
Merged-chr17-6154623-1	chr17	6154523	6154723	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	16475.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	8.08	12.83	4.56	6.44	7.77	14.42	2.33	9.03	7.47	12.05	7.03	2.51
Merged-chr5-25086415-1	chr5	25086315	25086515	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	MIRb|SINE|MIR	14227.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.81	1.51	6.28	3.22	14.73	11.29	5.98	14.86	0.39	3.01	5.02	4.7
Merged-chr10-12729203-1	chr10	12729103	12729303	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 13 of 73)	intron (NM_011682, intron 13 of 73)	132532.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.04	0.75	6.85	2.41	6.95	5.64	4.32	9.81	2.56	2.51	8.04	6.58
Merged-chr5-97002499-1	chr5	97002399	97002599	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4810.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	6.29	6.28	7.24	9.0	2.82	8.3	9.17	7.08	3.51	9.55	5.33
Merged-chr14-74774396-1	chr14	74774296	74774496	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	42099.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	4.44	2.52	9.13	7.24	11.05	3.14	4.98	8.58	4.13	3.01	6.53	5.95
Merged-chr7-83615968-1	chr7	83615868	83616068	+	835.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177695, exon 18 of 23)	exon (NM_177695, exon 18 of 23)	-16049.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	5.25	6.79	4.56	5.63	6.55	8.47	3.65	2.13	4.33	12.55	13.57	5.64
Merged-chr12-108931321-1	chr12	108931221	108931421	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37049.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.81	0.0	0.57	0.0	2.05	12.54	5.65	12.39	1.97	6.53	5.53	3.76
Merged-chr5-137859049-2	chr5	137858936	137859136	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-987.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	4.44	4.28	3.99	2.01	7.77	5.96	3.99	6.56	6.29	2.51	9.04	3.45
Merged-chr3-51654501-1	chr3	51654401	51654601	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6678.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.04	5.28	6.85	4.83	3.68	6.27	9.63	11.27	3.74	6.53	9.04	3.45
Merged-chr14-20694494-1	chr14	20694394	20694594	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028428)	promoter-TSS (NM_028428)	-474.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	5.25	5.79	5.7	3.22	12.27	4.08	10.3	5.36	8.26	5.02	5.53	4.07
Merged-chr15-30605916-1	chr15	30605816	30606016	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-433210.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.04	2.26	4.56	3.62	3.27	3.14	9.63	6.87	6.88	9.54	7.03	6.58
Merged-chr11-34074706-3	chr11	34074576	34074776	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	23878.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	4.44	10.31	9.7	8.04	7.36	4.39	6.31	12.5	10.23	7.53	5.02	6.89
Merged-chr12-100319887-1	chr12	100319787	100319987	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43278.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.63	0.0	3.99	2.01	7.36	6.27	6.31	8.69	2.16	5.52	3.01	3.76
Merged-chr7-45509813-1	chr7	45509713	45509913	+	835.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163662, exon 2 of 13)	exon (NM_001163662, exon 2 of 13)	595.0	NM_008749	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	1.62	1.51	0.57	0.8	2.45	1.88	3.65	1.74	2.95	3.51	1.51	8.14
Merged-chr6-116681655-3	chr6	116681545	116681745	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7809.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.06	7.55	22.82	6.44	20.86	15.05	21.59	22.04	14.16	8.03	15.07	13.78
Merged-chr1-153500656-1	chr1	153500556	153500756	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12996.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	10.9	5.79	4.56	3.62	3.27	7.84	2.99	6.11	1.97	3.51	2.51	1.88
Merged-chr10-53519122-1	chr10	53519022	53519222	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037973)	promoter-TSS (NR_037973)	-133.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.4	2.01	1.14	0.8	2.86	0.63	4.98	6.59	1.57	0.0	4.02	0.0
Merged-chr7-25248463-3	chr7	25248313	25248513	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2345.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	11.31	8.3	5.7	6.84	6.95	10.66	4.98	9.17	4.92	3.01	8.54	8.46
Merged-chr9-55024049-3	chr9	55023956	55024156	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145129, intron 3 of 5)	intron (NM_145129, intron 3 of 5)	2503.0	NM_145129	110834.0	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	15.75	11.07	5.7	6.03	11.86	13.17	8.3	6.7	13.18	12.55	15.58	10.65
Merged-chr8-11336684-2	chr8	11336602	11336802	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-23876.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.86	3.52	7.42	13.67	26.59	18.19	16.28	32.44	9.44	14.56	16.08	9.08
Merged-chr15-100638033-1	chr15	100637933	100638133	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	3.63	3.02	6.28	2.82	4.09	3.45	0.66	1.96	2.95	2.01	5.53	3.45
Merged-chr9-65359334-1	chr9	65359234	65359434	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016688, exon 5 of 5)	3' UTR (NM_016688, exon 5 of 5)	-1726.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	3.23	2.26	11.41	3.62	5.32	5.33	5.65	7.88	2.56	2.51	7.54	8.46
Merged-chr12-111462389-1	chr12	111462289	111462489	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	19728.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.65	2.77	2.28	6.84	4.5	11.6	5.31	6.06	5.31	0.0	5.02	1.25
Merged-chr3-30847704-3	chr3	30847605	30847805	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8245.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	4.85	8.8	19.4	7.64	1.64	0.94	6.31	7.4	14.55	7.03	8.04	8.14
Merged-chr17-27960651-1	chr17	27960551	27960751	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	51345.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	7.27	0.0	6.28	2.82	7.77	6.59	2.33	12.53	2.16	1.0	5.02	5.01
Merged-chr1-84443917-1	chr1	84443817	84444017	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-159272.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.63	0.5	6.85	5.63	8.18	4.7	3.99	7.79	1.38	3.51	6.53	0.94
Merged-chr2-30708004-3	chr2	30707901	30708101	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13209.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	8.88	8.05	7.99	9.65	11.45	5.64	8.97	11.47	17.31	10.54	10.05	11.28
Merged-chr5-52386156-2	chr5	52386039	52386239	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 10 of 11)	intron (NM_001256059, intron 10 of 11)	22335.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	3.23	8.55	13.69	0.4	2.86	3.76	2.33	2.44	17.31	13.05	15.58	5.95
Merged-chr12-70708175-1	chr12	70708075	70708275	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-117339.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	1.62	1.01	5.7	3.22	5.73	5.96	3.65	9.2	2.95	1.51	8.54	1.25
Merged-chr6-83087372-1	chr6	83087272	83087472	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010692, intron 1 of 1)	intron (NM_010692, intron 1 of 1)	1007.0	NM_010692	16815.0	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox 2	protein-coding	10.9	6.79	1.14	6.03	4.91	1.88	5.65	7.21	6.88	12.55	7.54	1.25
Merged-chr5-35757123-1	chr5	35757023	35757223	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-757.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.63	6.54	8.56	2.41	8.59	8.78	13.62	6.34	3.74	1.0	5.53	4.07
Merged-chr12-3776177-1	chr12	3776077	3776277	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-30803.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.42	3.02	5.13	7.64	6.14	7.84	9.3	10.91	6.1	1.51	8.54	3.45
Merged-chr17-29389372-1	chr17	29389272	29389472	+	835.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28458.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.44	2.77	10.27	3.22	0.82	3.14	6.98	1.96	17.9	11.05	24.12	5.64
Merged-chr4-19712449-1	chr4	19712349	19712549	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-3445.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	3.23	2.26	2.28	12.07	10.64	7.84	7.64	15.39	4.72	3.51	7.54	5.95
Merged-chr17-80734883-3	chr17	80734774	80734974	+	834.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6849.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	5.25	11.57	10.84	4.83	17.59	9.72	9.3	11.97	11.21	10.54	20.1	14.1
Merged-chr14-104474660-2	chr14	104474571	104474771	+	834.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6672.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.83	10.56	5.13	6.03	13.5	13.48	12.62	15.22	7.28	9.54	13.06	5.33
Merged-chr14-10228208-3	chr14	10228123	10228323	+	834.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	225235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.86	9.06	10.27	16.09	8.18	10.98	10.96	17.5	13.96	14.06	26.63	11.9
Merged-chr10-67036330-3	chr10	67036229	67036429	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 3 of 7)	intron (NM_178606, intron 3 of 7)	31254.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	8.48	10.56	10.84	8.85	15.55	10.98	9.3	12.17	14.95	17.57	26.13	6.89
Merged-chr18-5832790-3	chr18	5832679	5832879	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240132.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	7.67	9.81	3.99	12.47	6.95	18.81	5.65	7.09	10.62	6.53	14.57	9.4
Merged-chr8-11015774-3	chr8	11015658	11015858	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7328.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	8.48	6.54	16.54	19.31	17.59	17.87	21.92	48.34	12.0	12.05	15.07	11.9
Merged-chr9-69289833-3	chr9	69289731	69289931	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	-10.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	10.5	2.52	2.28	14.08	26.18	30.42	17.94	18.84	6.1	13.56	18.09	9.71
Merged-chr10-8769533-3	chr10	8769475	8769675	+	834.938904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	116495.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	10.9	4.78	10.27	13.27	13.09	9.41	7.97	12.08	8.26	7.03	9.55	4.7
Merged-chr6-31457155-2	chr6	31457048	31457248	+	834.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013791, intron 8 of 17)	MTEb-int|LTR|ERVL-MaLR	58320.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	3.23	3.77	6.85	7.24	10.23	11.92	22.92	17.27	11.6	16.07	11.56	3.13
Merged-chr13-67278516-2	chr13	67278425	67278625	+	834.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033540)	promoter-TSS (NR_033540)	-69.0	NR_033540	100038627.0	Mm.387089	NR_033540	ENSMUSG00000114442	F630042J09Rik	-	RIKEN cDNA F630042J09 gene	ncRNA	15.34	12.58	10.27	14.48	7.36	12.86	6.31	16.09	0.98	4.02	1.0	2.19
Merged-chr3-37640396-3	chr3	37640296	37640496	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305441, intron 1 of 1)	CpG	449.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	14.94	9.56	9.7	16.49	7.36	5.64	10.3	10.23	9.64	10.04	8.04	6.89
Merged-chr9-108518228-3	chr9	108518126	108518326	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175143, intron 1 of 9)	intron (NM_175143, intron 1 of 9)	1139.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	7.27	8.55	9.7	10.86	9.0	13.17	11.63	6.73	17.31	10.54	20.1	17.23
Merged-chr12-70107108-3	chr12	70106994	70107194	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286079, intron 1 of 28)	MIRb|SINE|MIR	-4240.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	13.33	5.79	17.68	20.11	15.55	19.13	8.64	19.32	7.67	17.07	16.08	6.27
Merged-chr11-70038286-3	chr11	70038171	70038371	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15853.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	12.92	8.55	6.85	2.41	12.68	5.96	2.33	7.63	15.34	11.05	15.07	8.14
Merged-chr1-95381221-3	chr1	95381127	95381327	+	834.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON29|DNA|PiggyBac?	67599.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	9.29	8.05	9.13	10.05	11.86	15.68	25.24	24.84	20.06	13.56	22.61	9.08
Merged-chr19-34213067-2	chr19	34212969	34213169	+	834.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-4439.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	9.29	10.06	11.41	14.88	17.59	14.42	13.29	19.32	3.54	6.53	4.52	7.83
Merged-chr10-4612027-2	chr10	4611943	4612143	+	834.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	54.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	4.85	9.81	11.41	7.64	9.0	6.27	6.64	8.38	6.69	5.02	7.03	3.45
Merged-chrX-101201634-3	chrX	101201524	101201724	+	834.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110311, intron 4 of 5)	Lx8|LINE|L1	20939.0	NM_001110311	55988.0	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	10.5	4.02	23.96	17.29	11.05	7.21	11.29	14.16	18.29	21.59	17.59	14.41
Merged-chr16-49999871-3	chr16	49999758	49999958	+	834.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19398.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	13.33	12.07	6.85	9.65	14.73	16.93	16.28	22.29	10.03	9.54	15.07	6.27
Merged-chr17-26012315-3	chr17	26012239	26012439	+	834.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162869, intron 5 of 14)	intron (NM_001162869, intron 5 of 14)	9521.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	10.5	9.06	5.13	6.44	19.64	10.98	6.98	15.31	19.87	19.58	13.06	12.84
Merged-chr11-106961493-1	chr11	106961393	106961593	+	834.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38032.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	1.62	2.52	0.0	1.61	9.0	6.59	4.65	9.36	6.69	3.51	11.05	3.13
Merged-chr3-36473499-3	chr3	36473412	36473612	+	834.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	2012.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	19.79	15.09	14.26	18.9	11.05	13.8	13.62	11.47	19.47	6.03	11.05	7.52
Merged-chr8-105518875-5	chr8	105518660	105518860	+	834.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008289)	promoter-TSS (NM_008289)	14.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	5.25	3.02	2.28	9.25	13.09	6.27	7.31	5.75	6.1	4.52	5.53	5.95
Merged-chr10-51553575-3	chr10	51553505	51553705	+	834.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36855.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	17.36	10.06	10.84	11.26	11.45	12.54	10.96	18.73	15.34	17.07	11.56	5.95
Merged-chr11-106666854-3	chr11	106666707	106666907	+	834.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	48474.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	2.42	6.04	9.13	5.63	9.82	11.6	9.63	5.52	10.03	8.54	4.52	4.39
Merged-chr13-103893234-3	chr13	103893135	103893335	+	834.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	27351.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	8.08	8.3	11.41	16.09	17.18	12.23	8.97	16.6	21.44	17.07	14.57	9.71
Merged-chr11-117344564-2	chr11	117344461	117344661	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	12248.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	10.9	10.31	25.1	16.09	7.77	17.87	13.29	15.64	10.23	3.51	5.53	3.13
Merged-chr17-35869720-4	chr17	35869637	35869837	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3122.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	16.15	8.3	14.83	8.04	7.36	19.13	8.97	7.43	6.88	15.57	12.06	5.64
Merged-chr13-17782009-3	chr13	17781905	17782105	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	L1_Mus3|LINE|L1	23092.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	8.88	8.05	17.11	5.63	16.36	14.74	13.95	4.63	38.16	31.13	30.15	20.36
Merged-chr15-27856384-4	chr15	27856313	27856513	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	169435.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	10.9	11.07	15.97	7.64	7.36	8.47	9.3	22.04	6.69	16.57	13.06	10.96
Merged-chr18-5162678-2	chr18	5162577	5162777	+	834.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153824)	TTS (NR_153824)	3054.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	7.67	4.78	2.85	6.03	9.0	7.53	4.65	10.09	3.15	14.56	10.05	11.59
Merged-chr13-62929380-2	chr13	62929290	62929490	+	834.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35503.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.04	1.01	9.13	2.41	7.36	3.76	12.29	8.92	13.96	9.04	24.12	23.49
Merged-chr18-80311132-3	chr18	80311019	80311219	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	53135.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	16.56	8.05	21.11	10.86	11.45	14.42	16.94	21.93	14.95	10.04	11.56	10.02
Merged-chr11-29718698-3	chr11	29718557	29718757	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024226)	promoter-TSS (NM_024226)	94.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	12.11	11.07	15.4	16.09	7.36	2.51	1.99	10.37	27.93	14.56	40.7	17.23
Merged-chr4-138216373-3	chr4	138216270	138216470	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122896)	promoter-TSS (NM_001122896)	-242.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	15.75	14.34	19.97	10.86	19.64	23.2	9.3	11.86	10.03	10.54	24.62	9.08
Merged-chr15-63704891-3	chr15	63704787	63704987	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103852.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	7.27	2.52	14.26	12.47	10.23	11.6	14.62	22.4	10.23	4.02	3.52	7.21
Merged-chr9-114592471-3	chr9	114592363	114592563	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153585, intron 18 of 19)	intron (NM_153585, intron 18 of 19)	-28094.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	10.5	9.31	12.55	13.67	9.82	6.9	7.64	9.95	10.82	20.08	19.09	15.66
Merged-chr11-114929842-3	chr11	114929749	114929949	+	834.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	4537.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	8.88	8.8	25.1	12.07	13.5	18.19	15.61	13.04	17.51	15.06	7.54	8.14
Merged-chr10-30380704-1	chr10	30380604	30380804	+	834.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-180164.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	2.02	5.03	7.99	10.46	2.86	7.84	7.31	18.14	5.11	3.51	22.61	5.33
Merged-chr17-84116395-1	chr17	84116295	84116495	+	834.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37735.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	3.63	4.02	3.42	4.02	17.18	5.96	5.31	11.1	7.08	5.02	7.03	2.82
Merged-chr16-36674584-3	chr16	36674474	36674674	+	834.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8497.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	11.71	6.54	16.54	3.62	10.23	6.9	12.62	14.72	12.78	3.51	16.58	3.45
Merged-chr9-77748216-1	chr9	77748116	77748316	+	834.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-6319.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	6.46	3.52	3.42	9.25	6.95	4.08	6.64	12.34	1.18	2.51	4.52	3.13
Merged-chr8-8459102-2	chr8	8459003	8459203	+	834.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	201670.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.62	3.02	4.56	4.02	11.86	27.91	10.96	4.82	26.95	33.64	18.59	13.16
Merged-chr10-95941945-3	chr10	95941841	95942041	+	834.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	1278.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	8.88	6.29	12.55	11.26	25.77	19.13	8.97	29.52	22.23	13.56	20.6	9.08
Merged-chr11-70805494-5	chr11	70805372	70805572	+	834.65332	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	2.42	7.29	13.69	5.63	11.45	11.6	3.32	4.71	12.0	12.05	12.06	7.83
Merged-chr2-102452232-2	chr2	102452147	102452347	+	834.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010218)	promoter-TSS (NM_010218)	-455.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	6.46	7.55	4.56	4.83	5.73	21.95	6.64	7.12	22.42	14.56	20.1	14.1
Merged-chr16-4594620-3	chr16	4594499	4594699	+	834.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-114.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	12.11	7.04	6.85	17.29	6.55	16.62	6.31	7.54	8.85	14.06	6.53	9.08
Merged-chr11-79307208-3	chr11	79307111	79307311	+	834.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32681.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	12.52	13.58	10.27	8.45	8.59	13.48	9.97	20.83	19.08	13.05	9.55	11.59
Merged-chr19-33109286-3	chr19	33109200	33109400	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-47812.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	17.77	18.86	27.38	12.87	9.41	13.17	16.94	11.44	20.85	10.54	13.06	10.02
Merged-chr18-23912204-3	chr18	23912153	23912353	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42435.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.25	5.79	14.83	3.22	22.09	16.31	19.27	15.64	15.93	11.55	10.55	11.9
Merged-chr10-127619373-3	chr10	127619277	127619477	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	1771.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.86	3.02	10.84	16.09	7.36	13.8	36.54	21.48	9.44	10.04	27.64	13.16
Merged-chr19-41016075-3	chr19	41015980	41016180	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4402.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	10.9	16.35	8.56	7.24	22.91	22.26	4.98	14.07	18.69	10.54	18.59	5.01
Merged-chr4-45297158-3	chr4	45297042	45297242	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027266)	promoter-TSS (NM_027266)	-26.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	6.46	7.04	5.7	12.07	13.5	13.48	8.97	11.83	19.87	16.07	22.11	11.9
Merged-chr11-113173014-1	chr11	113172914	113173114	+	834.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	28824.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.29	10.04	16.58	16.29
Merged-chr19-41597291-1	chr19	41597191	41597391	+	834.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8640.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.0	2.01	0.0	0.0	0.41	0.0	1.99	2.1	11.41	23.6	14.07	10.02
Merged-chr14-62218259-3	chr14	62218154	62218354	+	834.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74725.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	12.92	12.07	9.7	17.29	15.14	12.23	15.61	10.29	11.41	18.58	10.55	9.08
Merged-chr18-38420301-3	chr18	38420192	38420392	+	834.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	1385.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	11.71	5.28	19.4	8.85	12.27	15.37	9.63	20.89	18.49	16.57	19.6	8.14
Merged-chr16-57526702-1	chr16	57526602	57526802	+	834.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	ID_B1|SINE|B4	-22540.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.04	1.26	4.56	3.62	7.36	6.59	8.64	9.79	5.7	2.51	2.51	2.82
Merged-chr17-87449048-1	chr17	87448948	87449148	+	834.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2113.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	6.06	2.26	5.7	7.64	8.18	4.39	5.31	9.59	6.88	0.5	4.02	4.39
Merged-chr6-50295359-1	chr6	50295259	50295459	+	834.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-33590.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	8.48	3.77	6.28	5.63	16.36	9.72	8.3	20.41	8.46	5.52	12.06	6.58
Merged-chr12-52318654-2	chr12	52318537	52318737	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161972.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.46	5.79	15.4	15.28	6.55	7.53	10.96	16.32	9.05	5.02	8.04	3.76
Merged-chr15-6625736-3	chr15	6625613	6625813	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	28590.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	8.88	6.79	6.28	1.61	10.64	22.89	1.0	2.55	11.01	23.1	11.56	3.13
Merged-chr1-127222389-3	chr1	127222278	127222478	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	17392.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.86	9.06	9.13	8.85	6.14	8.15	14.95	9.34	11.41	7.03	13.57	5.01
Merged-chr19-45017508-3	chr19	45017429	45017629	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-606.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	11.31	17.36	12.55	12.47	12.68	18.19	21.26	12.31	10.62	12.55	15.58	8.77
Merged-chr16-22511460-3	chr16	22511357	22511557	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-23.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	12.92	9.31	13.69	19.31	18.41	11.92	9.97	13.51	13.96	13.05	7.03	13.16
Merged-chr17-35865909-3	chr17	35865780	35865980	+	834.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-248.0	NM_001146710	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	21.4	19.87	10.27	10.46	14.32	31.36	11.96	8.19	18.1	18.08	10.05	4.39
Merged-chr12-111036373-3	chr12	111036267	111036467	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3431.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	11.71	8.8	6.28	5.63	18.82	21.95	4.32	8.38	13.18	15.57	7.03	10.96
Merged-chr2-128710986-3	chr2	128710910	128711110	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	12095.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	15.75	6.04	11.98	14.08	19.23	10.98	30.23	65.78	16.92	10.04	11.56	9.71
Merged-chr12-104233381-3	chr12	104233288	104233488	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	RMER16|LTR|ERVK	-2759.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	14.13	20.37	30.23	28.56	18.41	9.41	10.63	7.93	28.13	12.55	30.65	13.47
Merged-chr9-61954920-3	chr9	61954819	61955019	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028748, exon 8 of 8)	3' UTR (NM_028748, exon 8 of 8)	-8120.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	18.98	5.53	10.27	14.88	15.55	19.76	13.29	16.96	14.16	14.06	18.09	14.72
Merged-chr7-4940364-3	chr7	4940265	4940465	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173008, intron 12 of 13)	intron (NM_173008, intron 12 of 13)	14521.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	8.88	23.64	10.27	19.31	10.23	12.86	5.98	16.12	21.44	47.7	18.59	15.66
Merged-chr3-97617337-3	chr3	97617244	97617444	+	834.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-7154.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	16.96	9.06	13.69	14.48	22.09	12.86	9.3	6.28	16.13	12.05	16.08	11.28
Merged-chr3-97681985-3	chr3	97681890	97682090	+	834.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8572.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	9.69	12.83	14.26	16.09	18.82	14.11	11.96	8.8	28.72	13.56	20.6	10.02
Merged-chr11-55446830-3	chr11	55446764	55446964	+	834.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	14344.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	12.92	10.06	6.85	22.12	9.41	8.78	6.31	13.57	7.67	19.58	12.56	18.48
Merged-chr6-131281641-1	chr6	131281541	131281741	+	834.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	11603.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.25	5.03	1.14	4.83	0.82	1.88	3.99	1.57	17.51	15.06	22.11	8.46
Merged-chrX-61677986-3	chrX	61677900	61678100	+	834.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31616.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	10.5	9.31	12.55	6.03	19.23	9.72	13.95	17.38	21.44	21.59	25.12	8.77
Merged-chr2-59055941-3	chr2	59055847	59056047	+	834.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	L1MA9|LINE|L1	104736.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	3.63	14.59	12.55	12.87	6.55	7.21	5.31	11.55	18.1	10.04	17.08	10.96
Merged-chr11-32221823-9	chr11	32221662	32221862	+	834.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010117, intron 1 of 17)	CpG	531.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	8.48	5.03	7.42	6.84	4.09	11.92	4.65	7.91	6.88	14.06	7.03	7.83
Merged-chr13-34096207-3	chr13	34096112	34096312	+	834.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046184, intron 2 of 4)	intron (NR_046184, intron 2 of 4)	17060.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	8.88	17.36	31.38	30.57	9.82	5.02	6.98	14.27	14.36	9.04	11.56	10.96
Merged-chr16-45390001-3	chr16	45389928	45390128	+	834.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	19025.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	9.29	6.79	9.13	6.03	9.82	9.72	5.98	11.92	23.8	13.56	30.65	8.14
Merged-chr1-20890583-2	chr1	20890497	20890697	+	834.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	49.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	8.88	12.83	5.13	11.66	8.59	21.32	12.29	22.63	7.87	5.02	5.53	11.28
Merged-chr4-145019332-2	chr4	145019244	145019444	+	834.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	126207.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.85	2.52	13.69	18.1	23.32	5.96	21.92	29.78	3.54	9.54	3.52	7.21
Merged-chr16-50364741-1	chr16	50364641	50364841	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	67648.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	7.27	4.02	6.28	8.04	7.77	3.45	10.63	9.17	3.54	6.03	8.54	4.7
Merged-chr15-81848491-3	chr15	81848396	81848596	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9830.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	8.88	13.83	10.27	10.46	17.59	20.07	6.98	7.46	23.41	17.07	18.09	5.33
Merged-chr15-58260762-1	chr15	58260662	58260862	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45870.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	8.48	5.53	10.84	2.41	18.41	11.29	6.64	10.63	17.51	10.04	12.56	8.77
Merged-chr2-36235101-3	chr2	36234992	36235192	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	4666.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	8.08	4.53	11.41	11.26	10.23	9.09	16.94	18.0	12.98	13.05	15.58	10.96
Merged-chr10-84209688-3	chr10	84209599	84209799	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-109002.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	8.88	5.79	8.56	8.04	13.5	4.39	4.32	15.84	6.29	6.53	19.09	13.47
Merged-chr2-5382610-3	chr2	5382511	5382711	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	3221.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	8.88	6.54	13.12	10.86	16.36	4.7	10.63	14.58	7.08	9.54	16.08	10.34
Merged-chr13-109437498-1	chr13	109437398	109437598	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	112754.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.02	4.78	9.13	7.64	9.0	4.7	12.29	12.48	7.08	4.02	8.04	2.82
Merged-chr1-57862107-1	chr1	57862007	57862207	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	16536.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	8.08	2.52	0.0	0.8	8.18	10.98	2.33	9.45	5.7	2.51	5.53	0.94
Merged-chr17-34335365-3	chr17	34335266	34335466	+	834.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9279.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	4.85	11.82	13.12	3.22	6.95	10.66	4.32	6.08	23.41	8.54	18.59	15.35
Merged-chr10-117952303-3	chr10	117952200	117952400	+	834.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26841.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.27	10.82	5.7	8.85	15.55	26.34	7.97	12.62	29.9	25.11	25.63	11.28
Merged-chr16-95707266-4	chr16	95707123	95707323	+	834.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	4816.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	10.09	14.09	7.42	10.46	11.86	9.72	3.99	4.04	12.78	12.05	10.05	2.82
Merged-chr3-60589593-3	chr3	60589493	60589693	+	834.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	88414.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	8.08	7.55	9.7	7.64	27.41	25.71	14.28	17.72	13.77	12.55	14.57	15.98
Merged-chr9-40787531-2	chr9	40787422	40787622	+	834.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-13751.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.86	4.02	1.14	7.64	6.55	6.27	5.65	16.96	17.11	11.55	9.55	9.71
Merged-chr14-16575482-2	chr14	16575356	16575556	+	834.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011243)	promoter-TSS (NM_011243)	20.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	22.61	15.34	26.81	17.29	4.91	8.15	4.65	6.62	1.57	3.01	2.01	4.7
Merged-chr14-73142048-3	chr14	73141949	73142149	+	834.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-461.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	5.25	4.53	8.56	6.44	11.86	10.03	14.62	19.4	17.9	17.57	17.59	8.14
Merged-chr8-83201146-3	chr8	83201048	83201248	+	834.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	(TTTTTA)n|Simple_repeat|Simple_repeat	35796.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.86	10.31	17.68	5.63	6.55	2.2	5.65	4.65	34.62	21.59	18.09	23.18
Merged-chr1-185205248-3	chr1	185205147	185205347	+	834.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	1079.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	12.92	12.58	11.98	10.86	19.64	17.25	4.98	12.25	20.26	17.07	12.06	10.96
Merged-chr17-25792348-3	chr17	25792244	25792444	+	834.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285982)	promoter-TSS (NM_001285982)	43.0	NM_001285982	214917.0	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	8.08	6.79	11.98	14.08	13.91	14.42	8.3	8.44	10.23	12.55	9.55	10.96
Merged-chr2-75706581-3	chr2	75706497	75706697	+	834.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1934.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	11.31	4.78	12.55	3.22	18.82	18.19	13.29	21.45	31.86	11.55	17.08	6.58
Merged-chr2-11280156-5	chr2	11280063	11280263	+	834.195251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 14 of 17)	intron (NM_008859, intron 14 of 17)	-59326.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	6.46	5.79	4.56	8.04	6.55	10.35	7.31	3.98	2.95	9.04	12.56	8.14
Merged-chr18-85698181-3	chr18	85698099	85698299	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-696753.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	21.4	52.32	25.1	27.75	15.14	20.7	18.93	1.04	10.62	19.08	19.6	28.51
Merged-chr15-25563896-3	chr15	25563792	25563992	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58658.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	94.49	90.05	83.29	57.51	11.45	25.4	7.97	3.81	21.83	27.62	11.05	7.21
Merged-chr14-30624489-3	chr14	30624409	30624609	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1699.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	9.29	9.06	3.42	5.63	9.0	13.17	11.96	6.62	15.14	12.05	19.6	9.08
Merged-chr2-17065332-3	chr2	17065220	17065420	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51594.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	18.17	11.07	5.7	25.74	10.23	10.98	16.94	11.5	11.6	10.04	16.58	3.13
Merged-chr7-49132957-2	chr7	49132854	49133054	+	834.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	29204.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	10.9	8.3	4.56	4.02	9.0	10.98	13.62	12.67	11.6	5.02	7.03	12.53
Merged-chr3-65533174-3	chr3	65533059	65533259	+	834.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-3745.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	9.69	10.82	5.13	12.87	3.68	15.37	5.98	14.27	16.52	14.56	11.56	5.95
Merged-chr2-166262000-3	chr2	166261884	166262084	+	834.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11924.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	8.08	5.79	15.97	13.67	7.77	5.96	14.62	20.89	8.65	5.02	22.61	11.59
Merged-chr8-11219450-2	chr8	11219341	11219541	+	834.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 33 of 51)	intron (NM_009931, intron 33 of 51)	-93364.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	11.31	10.06	10.84	12.07	9.82	30.1	32.55	29.86	3.74	5.52	7.03	4.7
Merged-chr5-86942906-2	chr5	86942817	86943017	+	834.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-16414.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	1.21	2.26	0.57	6.84	11.45	8.78	17.61	15.62	15.54	9.54	13.06	10.02
Merged-chr6-47631747-3	chr6	47631645	47631845	+	834.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	23349.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	19.79	15.09	13.69	8.85	11.86	20.07	8.97	14.58	17.31	8.54	18.09	13.16
Merged-chr15-96757985-3	chr15	96757891	96758091	+	834.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58263.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.46	4.78	13.12	12.07	26.18	10.03	6.64	11.27	16.13	6.03	17.59	15.04
Merged-chr2-32084805-3	chr2	32084697	32084897	+	834.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151493)	promoter-TSS (NR_151493)	-128.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	13.33	5.79	7.42	10.86	13.09	12.54	11.96	10.04	12.0	5.02	11.05	9.08
Merged-chr15-81097613-2	chr15	81097513	81097713	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	7434.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	13.33	5.53	19.4	6.44	18.41	9.09	6.31	8.3	18.29	8.54	2.51	5.33
Merged-chr2-34976635-3	chr2	34976554	34976754	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14882.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	12.11	7.8	14.26	1.61	20.46	25.09	8.97	7.68	17.51	8.54	17.59	5.64
Merged-chr13-95801624-1	chr13	95801524	95801724	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	90298.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.23	3.02	8.56	6.84	7.36	4.7	4.98	11.13	3.34	0.5	0.0	2.19
Merged-chr10-83640084-1	chr10	83639984	83640184	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	8580.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	3.23	1.01	7.42	5.23	0.41	4.39	7.64	5.24	0.59	2.01	0.0	0.63
Merged-chr15-50697318-2	chr15	50697223	50697423	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191726.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.88	5.28	14.26	12.07	5.32	10.98	4.98	9.17	6.49	11.05	9.04	4.39
Merged-chr10-118038542-2	chr10	118038442	118038642	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103245.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.46	7.55	11.41	4.02	9.0	4.08	4.65	11.89	0.98	0.0	0.0	0.63
Merged-chr5-95881102-2	chr5	95881005	95881205	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75834.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	3.63	7.04	2.28	7.64	3.27	11.29	5.31	12.76	11.21	5.52	4.52	8.46
Merged-chr2-126483506-1	chr2	126483406	126483606	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 2 of 27)	intron (NM_001359975, intron 2 of 27)	8047.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.46	5.79	11.98	6.84	3.68	3.14	9.3	6.73	7.28	5.02	5.02	2.51
Merged-chr1-57849315-1	chr1	57849215	57849415	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 1 of 11)	MER5A|DNA|hAT-Charlie	3744.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.23	3.52	7.99	4.02	11.05	28.54	10.96	8.1	3.93	6.03	6.03	0.63
Merged-chr4-137857348-2	chr4	137857266	137857466	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4871.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	23.02	4.02	9.7	20.91	20.46	15.37	7.64	14.22	4.13	5.02	18.09	5.01
Merged-chr5-31881741-1	chr5	31881641	31881841	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	183691.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.85	4.02	6.85	12.07	2.86	3.76	0.66	6.5	4.52	8.54	7.54	6.27
Merged-chr16-18248090-1	chr16	18247990	18248190	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001080999)	promoter-TSS (NM_001080999)	604.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	6.46	4.02	9.7	3.62	8.18	4.7	6.31	8.13	6.29	10.04	11.05	8.46
Merged-chr8-71612572-2	chr8	71612517	71612717	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146211, intron 2 of 11)	intron (NM_146211, intron 2 of 11)	1593.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	3.63	5.53	0.57	3.62	4.09	7.21	2.33	2.44	6.88	7.53	4.02	9.71
Merged-chr9-35175641-1	chr9	35175541	35175741	+	834.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027030, intron 1 of 5)	intron (NM_027030, intron 1 of 5)	346.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	15.34	7.8	10.84	9.25	14.32	17.87	12.62	14.69	17.31	22.59	19.6	7.52
Merged-chr3-88832580-2	chr3	88832493	88832693	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015498)	promoter-TSS (NR_015498)	-106.0	NR_015498	319830.0	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	8.88	10.82	9.7	5.63	0.0	0.0	0.0	0.03	18.69	25.61	20.1	21.3
Merged-chr16-11000598-1	chr16	11000498	11000698	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7477.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	2.83	3.27	0.57	2.41	11.86	6.9	18.27	6.98	4.33	4.02	4.52	6.27
Merged-chrX-20928654-1	chrX	20928554	20928754	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008823, exon 4 of 9)	exon (NM_008823, exon 4 of 9)	2901.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	4.04	2.52	4.56	2.41	3.68	1.57	5.98	7.01	3.93	2.01	7.03	2.82
Merged-chr8-75218135-3	chr8	75218038	75218238	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	4194.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	16.15	11.07	9.7	17.7	13.91	3.45	9.3	18.56	8.65	9.04	18.59	10.65
Merged-chr5-143065367-1	chr5	143065267	143065467	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	47653.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.04	4.53	3.42	4.42	3.68	3.14	9.3	6.95	4.33	2.01	5.02	4.39
Merged-chr9-70791652-1	chr9	70791552	70791752	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	112670.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	7.27	2.77	10.84	8.04	11.45	7.53	3.65	7.91	6.49	6.53	9.55	7.52
Merged-chr18-74974217-3	chr18	74974124	74974324	+	833.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110446, intron 5 of 6)	ID_B1|SINE|B4	7323.0	NR_110446	71545.0	Mm.488094	NR_110446		9030625G05Rik	-	RIKEN cDNA 9030625G05 gene	ncRNA	7.67	9.06	10.27	15.28	8.18	18.19	19.6	23.07	17.31	3.01	19.6	14.72
Merged-chr16-31944209-3	chr16	31944132	31944332	+	833.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 2 of 2)	intron (NM_172822, intron 2 of 2)	4289.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	11.71	17.86	17.68	11.66	9.82	18.19	10.3	14.64	19.28	19.08	10.55	10.02
Merged-chr18-75895898-2	chr18	75895805	75896005	+	833.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	75727.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	10.9	2.26	8.56	7.24	9.0	11.29	13.29	24.48	15.14	12.05	22.61	10.02
Merged-chr10-78156895-3	chr10	78156792	78156992	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	12876.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.85	14.84	12.55	12.87	9.0	12.86	6.98	14.72	11.8	3.51	15.58	7.83
Merged-chr1-105986557-3	chr1	105986435	105986635	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	3747.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	4.04	6.29	9.13	9.65	7.77	15.68	14.28	21.67	18.1	22.59	37.69	19.11
Merged-chr6-116142414-3	chr6	116142309	116142509	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	Lx8|LINE|L1	50965.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	10.9	11.32	11.98	13.67	33.14	28.54	11.63	17.94	8.85	18.08	17.59	7.21
Merged-chr13-45052443-3	chr13	45052350	45052550	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50354.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.86	10.06	12.55	1.21	5.32	10.98	12.95	8.58	17.51	16.57	12.56	2.19
Merged-chr5-135400492-3	chr5	135400379	135400579	+	833.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5933.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	10.9	7.8	14.26	3.62	9.82	12.54	9.3	10.68	13.96	14.56	11.56	13.47
Merged-chr11-105485155-3	chr11	105485058	105485258	+	833.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-28423.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	12.11	9.81	10.84	4.02	16.36	14.42	3.32	10.71	16.92	12.05	16.08	12.53
Merged-chr3-65315919-2	chr3	65315810	65316010	+	833.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-13225.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	2.83	7.55	10.27	4.02	32.32	38.57	30.56	26.3	9.64	11.05	13.06	8.14
Merged-chr12-91789928-3	chr12	91789848	91790048	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3512.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	10.09	11.32	10.84	10.05	16.36	12.23	10.63	11.24	15.93	8.03	9.04	10.34
Merged-chr5-90783881-3	chr5	90783784	90783984	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2217.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	14.94	9.06	7.42	11.26	18.82	16.62	14.95	16.12	10.62	9.54	16.58	5.01
Merged-chr17-37046756-3	chr17	37046602	37046802	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019439, exon 2 of 23)	exon (NM_019439, exon 2 of 23)	736.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	6.06	10.31	10.27	13.67	7.36	7.21	4.98	8.02	14.75	8.03	6.53	6.58
Merged-chr8-31113328-3	chr8	31113237	31113437	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	1491.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	21.0	9.31	15.4	17.7	6.55	6.9	18.27	14.69	9.83	8.03	9.04	11.28
Merged-chr2-11664137-3	chr2	11664046	11664246	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	21354.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	14.94	8.8	6.85	1.61	9.82	15.99	3.32	6.2	9.05	17.07	20.1	18.48
Merged-chr5-139017574-2	chr5	139017469	139017669	+	833.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22616.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	8.08	9.81	21.11	10.05	13.5	13.48	8.97	10.46	14.55	17.07	24.12	9.08
Merged-chr5-19951919-3	chr5	19951807	19952007	+	833.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	44389.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	12.52	8.3	18.25	7.64	5.73	9.41	10.96	17.72	10.42	9.54	19.6	10.34
Merged-chr13-37778285-3	chr13	37778187	37778387	+	833.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-47751.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	17.77	8.55	8.56	10.86	12.27	17.87	16.94	19.65	10.82	20.08	14.07	16.29
Merged-chr19-38043511-2	chr19	38043437	38043637	+	833.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	40.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	11.71	8.05	6.28	12.47	8.59	8.78	11.29	8.24	10.23	4.02	5.53	2.82
Merged-chr11-58093158-1	chr11	58093058	58093258	+	833.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10812.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	8.08	9.56	7.99	10.05	13.91	9.72	12.29	7.57	4.13	1.0	4.52	0.0
Merged-chr4-111002066-1	chr4	111001966	111002166	+	833.833313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-412940.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	9.29	13.08	2.85	8.04	4.09	0.0	1.33	2.3	0.98	0.0	1.51	1.57
Merged-chr8-18760044-1	chr8	18759944	18760144	+	833.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173189, intron 12 of 13)	intron (NM_173189, intron 12 of 13)	-18482.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	5.65	3.52	6.28	4.42	10.23	13.17	9.97	9.03	1.97	6.53	3.52	3.76
Merged-chr5-113180397-2	chr5	113180300	113180500	+	833.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17087.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	14.54	17.1	22.82	12.87	4.5	12.23	9.3	6.08	1.97	4.52	3.01	2.19
Merged-chr4-133928925-3	chr4	133928779	133928979	+	833.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39112.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	10.5	10.56	10.84	6.84	9.41	10.66	3.99	12.93	7.67	8.54	9.04	11.59
Merged-chr6-135166889-2	chr6	135166789	135166989	+	833.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	1326.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	2.83	10.06	3.42	1.61	4.91	10.03	4.65	7.26	13.57	17.57	12.56	8.14
Merged-chr10-94225574-2	chr10	94225474	94225674	+	833.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26565.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	12.52	8.8	13.69	6.84	10.64	29.16	5.98	16.6	0.2	0.5	1.51	2.82
Merged-chr11-54029213-3	chr11	54029088	54029288	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1084.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	21.4	10.06	11.41	14.48	20.86	13.8	12.62	12.22	15.34	19.08	13.06	13.16
Merged-chr2-128377919-3	chr2	128377813	128378013	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	51438.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.11	16.6	12.55	4.42	17.18	13.48	10.3	6.87	24.19	14.06	19.09	6.27
Merged-chrX-163851078-3	chrX	163850958	163851158	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57959.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	6.86	7.04	10.27	18.9	21.27	14.11	15.94	29.83	22.42	13.05	14.07	10.65
Merged-chr1-165770429-3	chr1	165770326	165770526	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 3 of 4)	intron (NR_149310, intron 3 of 4)	6668.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	10.09	5.79	10.27	16.09	11.05	10.03	11.63	20.05	20.26	4.52	16.08	18.8
Merged-chr18-73574040-9	chr18	73573997	73574197	+	833.759277	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	1392.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	4.44	11.07	11.41	10.86	11.45	6.9	6.98	7.99	12.19	11.55	11.56	10.96
Merged-chr3-153917373-2	chr3	153917272	153917472	+	833.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A3|LTR|ERVK	-4406.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	8.48	6.79	3.42	10.46	12.68	10.35	7.97	15.62	4.33	8.03	14.57	12.22
Merged-chr8-24438709-5	chr8	24438583	24438783	+	833.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026931, exon 1 of 1)	exon (NM_026931, exon 1 of 1)	263.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.85	7.55	14.26	6.44	7.36	13.17	7.64	4.12	8.85	18.08	10.05	5.64
Merged-chr4-53521734-3	chr4	53521616	53521816	+	833.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 4 of 15)	L1MB3|LINE|L1	81303.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	7.67	21.13	7.42	3.22	17.59	43.27	24.25	13.63	11.21	17.57	21.61	2.51
Merged-chr5-146897162-3	chr5	146897053	146897253	+	833.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51504.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	12.92	3.27	10.27	10.46	9.41	17.25	8.97	15.45	26.95	17.07	27.13	16.92
Merged-chr19-8953202-3	chr19	8953126	8953326	+	833.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-606.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	12.52	10.82	14.26	6.84	13.5	10.98	13.95	10.77	9.64	16.57	16.08	16.29
Merged-chr5-143629872-2	chr5	143629778	143629978	+	833.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	7431.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	8.48	11.82	11.41	11.26	9.41	3.45	2.99	11.86	8.26	4.02	9.04	3.76
Merged-chr1-152542003-3	chr1	152541915	152542115	+	833.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	83202.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	10.5	5.79	15.97	11.66	17.18	25.09	11.63	13.51	13.57	13.05	16.58	21.93
Merged-chr18-60747918-4	chr18	60747823	60748023	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	497.0	NM_001348100	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	8.08	4.78	13.12	6.03	1.64	6.59	8.3	6.39	12.19	15.57	9.55	11.59
Merged-chr16-44760399-3	chr16	44760302	44760502	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5334.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	10.5	8.3	18.25	11.66	22.09	17.25	6.64	18.48	13.77	9.04	12.56	10.65
Merged-chrX-106146559-1	chrX	106146459	106146659	+	833.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 1 of 2)	intron (NM_205820, intron 1 of 2)	3284.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	7.67	5.28	2.28	7.64	8.18	3.76	8.3	15.84	2.36	1.51	5.02	3.13
Merged-chr8-25445289-3	chr8	25445218	25445418	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-73441.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	9.69	8.3	7.42	15.69	6.95	16.31	18.6	26.47	7.08	10.54	21.61	13.16
Merged-chr2-157430055-1	chr2	157429955	157430155	+	833.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	B1F1|SINE|Alu	5762.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.46	5.28	5.13	9.25	11.86	11.29	6.98	5.8	4.33	5.02	1.51	3.13
Merged-chr6-88066864-3	chr6	88066772	88066972	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-17601.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	15.75	8.3	3.42	6.84	9.0	10.35	7.64	10.12	9.24	16.07	15.58	7.21
Merged-chr11-114702823-3	chr11	114702711	114702911	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-24601.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	16.15	17.86	18.25	10.86	11.05	4.08	3.99	6.25	21.83	16.07	18.59	9.08
Merged-chr6-121135126-1	chr6	121135026	121135226	+	833.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4104.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	5.25	2.77	3.42	6.44	0.41	3.14	2.33	4.65	12.98	12.05	21.61	9.4
Merged-chr15-39173049-3	chr15	39172971	39173171	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-25215.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	19.79	16.1	40.5	7.24	34.36	38.57	33.55	9.08	0.59	11.55	13.06	0.31
Merged-chrX-101636923-2	chrX	101636835	101637035	+	833.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3116.0	NM_139144	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	5.25	2.26	2.28	4.02	9.82	9.41	1.99	14.52	10.82	9.54	21.1	10.34
Merged-chr12-112743369-3	chr12	112743256	112743456	+	833.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024602, intron 14 of 18)	intron (NM_001024602, intron 14 of 18)	10034.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	14.13	6.79	5.7	5.63	17.59	6.27	6.31	8.86	12.19	8.54	24.12	11.59
Merged-chr7-31034885-2	chr7	31034777	31034977	+	833.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	5440.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	2.83	1.26	2.28	3.22	5.73	4.08	5.98	4.21	12.78	10.54	10.55	11.28
Merged-chr13-63565031-3	chr13	63564903	63565103	+	833.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	732.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	5.65	11.57	2.85	3.62	5.32	5.64	9.3	7.74	6.69	12.55	13.57	10.34
Merged-chr13-110599771-3	chr13	110599691	110599891	+	833.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	204747.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.25	9.56	30.23	8.04	19.23	15.99	9.3	14.78	19.67	23.6	18.59	23.18
Merged-chr2-19006301-3	chr2	19006191	19006391	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7972.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	14.54	11.07	19.4	12.47	12.68	5.33	9.63	16.37	8.46	4.52	7.54	8.46
Merged-chr14-79511742-3	chr14	79511646	79511846	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	-3928.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	10.09	3.77	3.42	15.28	15.14	13.48	12.62	24.62	16.92	5.02	12.06	9.71
Merged-chr6-65614460-3	chr6	65614354	65614554	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	24056.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	14.54	12.07	11.41	9.25	11.45	10.35	11.96	18.25	16.92	5.02	18.59	9.71
Merged-chr2-166683117-3	chr2	166683034	166683234	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	30698.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	14.54	9.56	13.12	6.03	11.86	11.92	10.63	8.07	13.18	10.04	10.55	9.71
Merged-chr16-5473693-2	chr16	5473598	5473798	+	833.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-217742.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	10.9	8.8	25.67	9.25	9.41	12.86	15.61	12.56	9.44	4.52	6.53	12.84
Merged-chr18-38403560-3	chr18	38403472	38403672	+	833.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-15335.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	11.31	14.59	9.13	15.28	16.36	9.09	10.96	24.98	9.83	10.04	14.57	10.34
Merged-chr4-133598884-3	chr4	133598783	133598983	+	833.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3285.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	11.71	15.85	15.97	10.05	18.0	18.5	15.61	12.53	9.44	6.53	12.06	6.89
Merged-chr18-14713526-3	chr18	14713437	14713637	+	833.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	7386.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	10.9	10.82	17.68	36.2	14.32	14.74	6.98	22.07	25.57	15.06	18.09	18.8
Merged-chr15-39616889-2	chr15	39616766	39616966	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 22 of 26)	intron (NM_053271, intron 22 of 26)	-42645.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	1.62	1.51	5.7	10.86	2.86	7.84	7.31	16.6	8.65	7.53	13.06	4.07
Merged-chr15-27621063-1	chr15	27620963	27621163	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013792, intron 2 of 6)	intron (NM_001013792, intron 2 of 6)	9630.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	8.48	5.79	10.27	14.48	9.41	8.78	8.3	18.39	6.49	4.02	13.06	4.7
Merged-chr5-110449291-2	chr5	110449198	110449398	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-795.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	10.5	5.79	12.55	7.24	13.09	10.98	9.63	14.64	15.14	25.11	13.06	10.34
Merged-chr3-130804037-1	chr3	130803937	130804137	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73639.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.85	3.77	2.85	5.23	9.0	8.47	6.98	6.34	8.65	5.02	2.01	4.39
Merged-chr7-111079865-2	chr7	111079765	111079965	+	833.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013507, intron 4 of 21)	intron (NM_013507, intron 4 of 21)	3165.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	15.75	9.06	4.56	3.62	6.14	20.7	6.64	1.49	14.55	5.52	7.03	8.77
Merged-chr17-9774964-1	chr17	9774864	9775064	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045433, exon 2 of 4)	non-coding (NR_045433, exon 2 of 4)	902.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	1.21	4.78	2.28	2.41	6.95	8.78	7.97	10.35	2.95	1.51	1.51	4.07
Merged-chr14-103929576-2	chr14	103929484	103929684	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-85108.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.23	8.3	4.56	8.45	12.68	9.72	16.28	24.14	14.55	6.53	17.08	6.58
Merged-chr7-24461566-2	chr7	24461501	24461701	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-882.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	4.85	2.77	1.14	4.83	4.5	5.96	7.64	6.84	1.97	6.53	6.03	6.89
Merged-chr4-136043959-1	chr4	136043859	136044059	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7700.0	NR_154592	105245868.0		NR_154592		Gm48909	-	predicted gene, 48909	pseudo	2.42	6.29	2.28	5.63	13.09	9.09	9.3	13.32	5.31	6.03	12.06	5.64
Merged-chr4-3483012-2	chr4	3482931	3483131	+	833.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-54059.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	17.77	13.58	13.69	6.44	13.91	18.5	9.97	6.22	10.03	7.53	8.04	5.33
Merged-chr11-107432303-2	chr11	107432224	107432424	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	38396.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	2.42	1.26	2.28	5.63	11.05	3.76	8.3	10.88	15.14	10.04	2.51	3.45
Merged-chr11-54821097-2	chr11	54821008	54821208	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040284, intron 1 of 2)	intron (NR_040284, intron 1 of 2)	1189.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	4.44	1.51	9.13	4.42	1.64	3.14	5.31	8.83	12.39	5.02	14.57	5.64
Merged-chr5-103474436-3	chr5	103474349	103474549	+	833.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	49257.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	12.11	11.07	9.7	31.37	16.77	5.33	4.32	16.15	14.16	14.06	23.62	15.98
Merged-chr2-35108332-2	chr2	35108233	35108433	+	833.483337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.85	7.55	1.14	2.41	27.82	21.32	8.97	9.9	14.55	10.04	14.07	11.9
Merged-chr15-98994100-3	chr15	98993999	98994199	+	833.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8134.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	8.88	9.56	8.56	4.42	11.86	19.44	0.66	12.9	19.47	14.06	21.61	5.95
Merged-chr14-120268694-3	chr14	120268596	120268796	+	833.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6973.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.85	9.56	10.84	13.67	3.27	11.29	3.32	8.92	13.57	19.08	27.64	8.14
Merged-chr12-56440590-3	chr12	56440469	56440669	+	833.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88851.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	4.85	7.8	22.25	11.26	13.5	8.78	6.31	13.21	6.69	7.03	19.09	7.83
Merged-chr19-32210608-3	chr19	32210524	32210724	+	833.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	389.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	15.34	6.54	5.7	2.82	20.05	21.95	7.31	8.64	13.57	16.07	16.58	7.83
Merged-chr1-135268277-3	chr1	135268165	135268365	+	833.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 4 of 9)	intron (NM_001159624, intron 4 of 9)	-9793.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	11.71	9.56	6.85	7.24	4.91	13.8	16.28	9.2	14.16	9.04	13.06	7.52
Merged-chr5-125441527-3	chr5	125441414	125441614	+	833.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-54.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	11.71	11.57	4.56	6.84	23.73	10.66	9.97	15.45	13.37	19.08	13.57	7.52
Merged-chr7-28807053-3	chr7	28806943	28807143	+	833.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3847.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	12.11	5.53	18.83	7.24	13.09	15.68	7.64	7.74	19.87	14.06	10.05	11.28
Merged-chr13-114818830-3	chr13	114818729	114818929	+	833.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113375, intron 1 of 5)	intron (NM_001113375, intron 1 of 5)	592.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	9.69	6.54	13.69	11.26	24.55	15.99	27.24	28.4	23.21	14.56	14.57	20.36
Merged-chr4-95048842-3	chr4	95048748	95048948	+	833.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010591)	TTS (NM_010591)	3374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	11.31	12.32	17.11	23.33	5.32	13.8	9.3	11.38	11.01	13.05	8.54	7.83
Merged-chr11-120784596-1	chr11	120784496	120784696	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	81.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	14.94	12.07	13.69	4.83	9.0	6.59	7.97	6.25	9.83	7.53	9.55	7.21
Merged-chr4-63568143-3	chr4	63568062	63568262	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144905, intron 4 of 9)	MIRb|SINE|MIR	7935.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	10.5	4.28	12.55	5.23	8.59	7.21	7.64	17.61	15.14	6.03	10.55	2.82
Merged-chr14-103795830-1	chr14	103795730	103795930	+	833.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47871.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.81	5.79	2.28	1.61	12.27	9.72	8.64	11.41	9.64	8.03	6.53	0.94
Merged-chr8-40910963-3	chr8	40910871	40911071	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007514, intron 7 of 11)	intron (NM_007514, intron 7 of 11)	-15262.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.02	7.55	10.84	9.65	7.77	4.39	7.64	12.76	27.14	30.13	44.22	20.99
Merged-chr6-142708625-2	chr6	142708532	142708732	+	833.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6358.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	5.65	2.52	4.56	10.86	18.0	7.53	5.98	9.39	13.37	20.08	16.58	6.27
Merged-chr17-55718836-3	chr17	55718707	55718907	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-6171.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	5.25	8.55	13.69	16.09	16.77	16.93	20.93	20.36	14.95	4.52	7.54	5.33
Merged-chr2-19048378-3	chr2	19048276	19048476	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50057.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	12.11	10.82	8.56	13.67	11.05	4.39	1.33	7.74	5.7	9.54	12.56	7.52
Merged-chr12-51966672-3	chr12	51966573	51966773	+	833.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	4648.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	13.73	13.08	9.7	13.67	11.86	11.92	12.29	15.7	15.34	10.04	17.59	7.21
Merged-chr5-125074696-3	chr5	125074608	125074808	+	833.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 14 of 46)	intron (NM_011424, intron 14 of 46)	71233.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	14.13	9.06	15.4	10.86	11.86	15.37	8.3	25.85	12.0	8.03	12.06	10.02
Merged-chr2-65238823-3	chr2	65238788	65238988	+	833.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-262.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	6.46	7.04	1.71	8.45	0.82	6.9	6.64	5.94	2.95	4.52	5.02	3.45
Merged-chr4-132824175-3	chr4	132824078	132824278	+	833.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18956.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	8.08	9.81	12.55	5.63	10.64	11.29	4.32	10.15	17.11	11.05	19.6	17.86
Merged-chr14-78631093-2	chr14	78630993	78631193	+	833.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104044, intron 1 of 27)	B1F|SINE|Alu	-1803.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	5.25	11.57	7.99	15.28	15.55	11.29	9.63	10.01	5.11	3.01	6.03	4.39
Merged-chr4-95211988-3	chr4	95211876	95212076	+	833.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-159754.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.88	11.32	9.13	3.22	13.09	31.04	9.63	11.38	14.95	11.55	12.06	8.46
Merged-chr6-94604731-3	chr6	94604622	94604822	+	833.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026255)	TTS (NM_026255)	1693.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	8.88	5.53	28.52	17.7	9.41	12.86	13.62	33.42	10.23	10.04	21.61	17.23
Merged-chr10-93273575-3	chr10	93273494	93273694	+	833.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	37565.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	11.31	9.81	7.99	4.83	4.09	11.92	7.97	10.96	6.88	9.04	18.59	9.71
Merged-chr8-91425589-2	chr8	91425491	91425691	+	833.1999509999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 3 of 8)	MTD|LTR|ERVL-MaLR	112066.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.23	4.53	5.7	5.63	9.0	15.37	10.63	17.3	20.06	9.04	19.6	10.34
Merged-chr19-40631455-3	chr19	40631367	40631567	+	833.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	19101.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	12.92	17.36	7.42	2.82	23.73	16.93	7.64	7.26	15.14	10.54	14.57	4.7
Merged-chr14-56042367-3	chr14	56042284	56042484	+	833.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008571, intron 1 of 4)	intron (NM_008571, intron 1 of 4)	261.0	NM_008571	17225.0	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	11.71	9.56	22.82	16.49	11.86	10.03	15.28	13.85	9.05	14.56	14.07	7.21
Merged-chr11-83618560-3	chr11	83618495	83618695	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-25508.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.81	4.78	4.56	3.62	5.73	2.51	15.61	6.64	5.9	8.54	2.51	7.52
Merged-chr3-51796568-3	chr3	51796465	51796665	+	833.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135386.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	6.06	9.31	13.12	9.25	11.86	9.72	13.95	10.88	10.42	11.55	11.56	14.41
Merged-chr15-59263639-1	chr15	59263539	59263739	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43309.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	5.65	3.02	5.13	4.02	9.0	8.47	6.98	11.86	5.51	6.03	9.04	6.89
Merged-chr5-43787673-1	chr5	43787573	43787773	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5524.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.85	4.78	3.42	3.62	13.09	12.23	10.3	6.48	3.74	11.05	5.02	5.64
Merged-chr1-65060287-2	chr1	65060194	65060394	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3146.0	NM_007776	12967.0	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	9.69	3.77	7.99	7.24	6.95	10.66	15.61	18.45	10.62	4.02	11.56	7.21
Merged-chr19-3423177-2	chr19	3423077	3423277	+	833.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8633.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	5.65	5.28	10.27	6.44	4.91	8.15	6.31	9.56	14.16	7.03	14.07	10.34
Merged-chr8-124751870-2	chr8	124751795	124751995	+	833.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081120)	promoter-TSS (NM_001081120)	-86.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	14.94	11.82	8.56	14.48	6.55	10.03	4.65	10.04	5.31	4.52	6.53	4.39
Merged-chr19-6952366-3	chr19	6952284	6952484	+	833.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007522)	TTS (NM_007522)	9822.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	12.92	7.29	14.83	8.85	11.45	12.86	3.65	10.79	9.83	10.54	8.04	6.58
Merged-chr1-164088103-2	chr1	164088010	164088210	+	833.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26034.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	7.27	4.53	10.27	5.23	14.32	9.72	11.63	8.36	5.31	11.55	17.59	11.9
Merged-chr15-26359005-2	chr15	26358918	26359118	+	833.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	49970.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	3.02	1.14	0.0	10.64	5.33	4.32	9.14	11.41	12.05	15.07	2.51
Merged-chr1-144320204-3	chr1	144320125	144320325	+	833.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71121.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	11.31	5.79	9.13	13.27	11.86	5.96	6.31	24.08	16.52	3.01	16.08	11.9
Merged-chr7-27526691-3	chr7	27526584	27526784	+	833.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	3423.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	5.25	12.58	7.99	11.26	11.05	10.98	9.97	6.39	11.41	15.06	11.56	14.41
Merged-chr12-84673957-1	chr12	84673857	84674057	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24850.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	2.42	2.01	0.0	6.44	1.23	5.33	7.31	4.6	3.74	1.0	5.02	5.33
Merged-chr8-10819280-1	chr8	10819180	10819380	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63174.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	8.88	4.53	2.28	4.42	3.27	9.41	4.98	6.76	7.28	9.54	7.03	1.57
Merged-chr8-40609943-2	chr8	40609856	40610056	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 1 of 13)	IAPLTR2a|LTR|ERVK	24836.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.0	2.01	3.42	1.61	0.0	0.94	5.98	3.28	55.86	39.67	49.24	25.06
Merged-chr4-11084935-1	chr4	11084835	11085035	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8730.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	5.25	5.53	3.42	5.63	6.95	4.08	7.97	10.4	4.92	6.53	3.01	7.52
Merged-chr6-113956047-1	chr6	113955947	113956147	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-21366.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	4.04	3.52	2.85	1.61	2.05	7.53	6.31	12.14	0.2	3.51	1.51	1.25
Merged-chr17-36121591-2	chr17	36121498	36121698	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046286)	promoter-TSS (NR_046286)	-154.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	2.42	2.52	1.14	2.41	13.91	20.07	4.65	13.51	148.89	164.69	106.02	71.11
Merged-chr16-30389408-3	chr16	30389320	30389520	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-890.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	12.52	8.55	9.7	10.86	8.18	10.98	5.65	5.24	15.93	7.03	14.57	15.04
Merged-chr14-76287305-1	chr14	76287205	76287405	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35843.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	5.25	5.03	2.28	4.42	2.45	15.37	3.32	1.91	6.69	4.02	6.03	4.39
Merged-chr18-84293165-3	chr18	84293067	84293267	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205009.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	12.11	9.06	17.11	2.41	13.09	9.72	9.3	11.64	17.51	11.05	12.56	4.7
Merged-chr3-104675508-2	chr3	104675406	104675606	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36842.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	14.13	10.56	4.56	3.62	6.14	15.05	8.3	7.46	5.51	6.03	8.04	0.94
Merged-chr7-132803692-1	chr7	132803592	132803792	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9504.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.23	4.53	4.56	5.63	4.91	4.39	5.98	8.97	1.57	3.01	5.02	2.19
Merged-chr6-94158654-1	chr6	94158554	94158754	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78788.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	1.21	2.52	0.0	3.62	4.91	6.9	0.66	12.39	0.0	3.01	1.51	1.57
Merged-chr2-148599667-2	chr2	148599567	148599767	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72948.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	5.25	2.26	3.99	6.03	12.68	14.74	4.32	11.89	6.29	8.03	19.6	9.4
Merged-chr12-24786092-1	chr12	24785992	24786192	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-45507.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	2.42	6.29	1.14	6.84	7.77	4.08	2.99	7.37	3.15	1.0	1.0	0.94
Merged-chr5-4912114-1	chr5	4912014	4912214	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 12 of 14)	intron (NM_011074, intron 12 of 14)	-153898.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.44	4.78	1.14	2.41	5.73	9.41	5.31	12.59	5.11	5.02	3.01	5.01
Merged-chr10-88379651-1	chr10	88379551	88379751	+	833.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	CpG	239.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	4.44	7.8	7.99	6.44	9.41	5.64	8.97	8.27	10.82	3.01	15.07	8.14
Merged-chr18-4873229-3	chr18	4873140	4873340	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	60754.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	9.69	7.55	16.54	7.24	29.86	20.07	24.25	36.31	10.82	7.03	24.12	12.22
Merged-chr18-4799376-1	chr18	4799276	4799476	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-13110.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	7.27	4.02	5.7	1.61	8.59	4.08	4.32	7.35	2.56	3.51	8.04	0.94
Merged-chr1-183668058-1	chr1	183667958	183668158	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80919.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.65	7.29	3.42	2.01	10.23	5.64	6.31	8.64	2.16	6.03	4.52	3.45
Merged-chr2-160015141-1	chr2	160015041	160015241	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1512.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	8.48	3.52	3.99	1.61	2.45	8.15	1.0	8.94	6.29	5.52	10.05	2.51
Merged-chr18-66502233-1	chr18	66502133	66502333	+	833.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1945.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	1.62	4.02	2.28	0.8	2.45	5.96	1.99	1.4	12.0	7.03	6.53	8.77
Merged-chr4-14930399-1	chr4	14930299	14930499	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243100)	promoter-TSS (NM_001243100)	-242.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	4.44	6.79	3.42	4.02	2.05	9.72	3.32	6.7	4.92	3.01	4.52	3.45
Merged-chr2-180116256-1	chr2	180116156	180116356	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3110.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	10.9	10.82	14.83	8.45	12.68	6.9	14.62	10.21	4.13	8.03	12.56	9.71
Merged-chr8-106753673-1	chr8	106753573	106753773	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 14 of 17)	intron (NM_173037, intron 14 of 17)	70605.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	7.67	3.02	9.13	4.42	10.64	0.94	6.98	10.4	9.64	0.5	5.53	5.95
Merged-chr4-137603928-2	chr4	137603837	137604037	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	9765.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	6.06	5.53	3.42	8.45	12.68	7.21	5.31	10.6	14.95	5.02	13.57	5.95
Merged-chr1-144283520-1	chr1	144283420	144283620	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34416.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.81	4.78	3.42	12.47	5.73	5.96	9.63	12.2	4.92	0.5	8.04	3.13
Merged-chr6-134642034-3	chr6	134641905	134642105	+	832.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026371, intron 1 of 3)	intron (NM_026371, intron 1 of 3)	1065.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	21.8	14.59	26.81	12.47	37.64	46.1	30.56	51.84	11.41	9.04	10.55	8.77
Merged-chr10-77623119-4	chr10	77622929	77623129	+	832.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	708.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	7.67	2.77	6.28	0.4	17.59	12.23	10.3	10.77	13.57	14.56	8.54	14.41
Merged-chr4-53410921-3	chr4	53410803	53411003	+	832.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29510.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.86	10.82	10.84	5.63	16.77	9.09	4.98	20.47	17.51	20.08	20.6	16.6
Merged-chr18-38962702-3	chr18	38962600	38962800	+	832.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30445.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.23	0.0	0.0	1.21	3.27	3.45	1.99	1.68	2.16	1.51	1.51	3.76
Merged-chr17-3224621-3	chr17	3224527	3224727	+	832.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101946.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	12.11	10.31	11.41	10.05	11.45	13.17	7.64	9.95	13.57	10.54	19.6	6.58
Merged-chr18-67700555-3	chr18	67700443	67700643	+	832.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24078.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	8.08	8.8	14.83	14.08	9.41	11.6	10.3	17.83	24.39	12.05	24.62	15.04
Merged-chr15-80235466-2	chr15	80235364	80235564	+	832.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357659, intron 2 of 6)	MIRc|SINE|MIR	1384.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	14.54	13.08	7.99	2.01	8.18	11.6	7.31	7.99	3.15	4.02	0.5	5.01
Merged-chr9-62972372-3	chr9	62972291	62972491	+	832.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	8488.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.65	15.09	11.98	8.85	8.18	6.9	4.65	6.42	11.01	6.53	7.54	6.58
Merged-chr11-95520909-3	chr11	95520814	95521014	+	832.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6349.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	13.73	10.06	10.27	5.63	13.91	8.78	5.98	9.64	15.14	15.06	17.59	5.33
Merged-chr6-118126761-2	chr6	118126663	118126863	+	832.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	12067.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	3.23	5.79	9.13	6.44	13.09	19.13	8.97	14.66	10.62	13.05	19.6	7.21
Merged-chr12-34547262-3	chr12	34547171	34547371	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	L1M5|LINE|L1	-18382.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	17.36	9.06	18.25	12.87	7.36	8.15	9.63	10.37	14.75	16.57	16.08	6.89
Merged-chr2-92296618-3	chr2	92296525	92296725	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	74432.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	10.5	12.83	15.97	12.47	20.46	13.17	8.3	15.06	21.64	16.07	18.59	12.53
Merged-chr8-66323210-3	chr8	66323101	66323301	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-63100.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	3.23	8.3	17.68	11.26	11.05	15.68	8.3	15.98	15.93	11.05	15.07	12.53
Merged-chr3-28057153-3	chr3	28057066	28057266	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 12 of 25)	intron (NM_008875, intron 12 of 25)	72995.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	9.69	15.09	21.11	12.87	12.68	11.92	7.31	20.55	12.39	13.05	21.1	9.08
Merged-chr7-19619183-3	chr7	19619098	19619298	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290457, intron 3 of 10)	intron (NM_001290457, intron 3 of 10)	10240.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	11.71	7.55	6.85	8.04	8.18	14.11	3.99	7.82	19.67	10.04	7.54	15.35
Merged-chr12-21347071-2	chr12	21346919	21347119	+	832.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277266, intron 6 of 19)	intron (NM_001277266, intron 6 of 19)	26613.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	6.46	11.32	10.84	4.42	13.09	10.66	1.66	9.48	2.56	1.0	2.51	0.94
Merged-chr3-104541472-3	chr3	104541372	104541572	+	832.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29554.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	18.98	12.58	15.4	15.28	19.23	19.13	8.64	24.84	13.18	11.55	6.03	4.07
Merged-chr1-131967447-1	chr1	131967347	131967547	+	832.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-3162.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	10.5	3.52	2.28	6.03	18.82	5.96	5.31	10.74	4.33	2.51	8.54	9.4
Merged-chr10-34139900-1	chr10	34139800	34140000	+	832.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11928.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	2.42	9.06	2.85	0.8	6.95	10.35	9.63	10.99	4.52	3.51	13.06	6.58
Merged-chr10-40882997-3	chr10	40882901	40883101	+	832.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	142.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	8.88	12.83	13.12	9.25	9.0	15.37	8.64	9.31	11.01	9.04	17.59	16.29
Merged-chr1-132384477-3	chr1	132384386	132384586	+	832.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5832.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	7.67	10.56	9.7	6.44	7.36	10.35	13.62	18.76	11.6	7.03	16.08	14.41
Merged-chr17-83695973-3	chr17	83695874	83696074	+	832.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10189.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	8.08	11.57	15.4	12.07	11.05	14.42	4.98	15.2	8.26	9.54	20.6	9.4
Merged-chr2-38932028-1	chr2	38931928	38932128	+	832.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172854)	promoter-TSS (NM_172854)	48.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	2.83	3.27	6.28	8.85	13.09	8.47	13.62	8.1	6.1	4.02	4.02	5.95
Merged-chr12-27313092-1	chr12	27312992	27313192	+	832.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29626.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	4.85	4.28	0.0	1.21	10.23	15.68	4.98	17.78	0.39	1.51	0.0	0.0
Merged-chr9-41084363-3	chr9	41084309	41084509	+	832.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-4903.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	21.8	8.05	5.13	2.01	9.41	29.16	8.97	6.45	15.74	24.1	13.06	12.53
Merged-chr6-29248024-1	chr6	29247924	29248124	+	832.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-24464.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	2.42	2.52	6.85	0.8	7.77	8.78	11.29	9.48	4.92	7.53	9.04	9.08
Merged-chr1-57639261-2	chr1	57639162	57639362	+	832.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-135599.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	7.27	3.27	11.41	26.55	11.05	3.76	13.29	35.61	6.88	2.51	26.63	7.52
Merged-chr2-85560410-3	chr2	85560287	85560487	+	832.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18828.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	8.88	13.83	19.4	14.88	10.64	8.47	8.97	15.59	17.9	2.51	20.6	15.04
Merged-chr13-54342867-3	chr13	54342776	54342976	+	832.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-28473.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	17.36	14.09	10.27	8.85	14.32	17.56	2.66	6.62	23.41	32.13	13.57	15.04
Merged-chr12-36119455-2	chr12	36119334	36119534	+	832.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025840, intron 5 of 11)	intron (NM_025840, intron 5 of 11)	29055.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	2.02	2.26	5.7	7.64	5.73	4.08	5.31	11.69	18.69	10.04	15.58	11.9
Merged-chr2-117962878-5	chr2	117962801	117963001	+	832.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	MTD|LTR|ERVL-MaLR	140973.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.04	3.77	6.85	12.07	5.32	4.7	13.29	10.43	4.13	5.52	4.52	9.4
Merged-chr9-60492435-3	chr9	60492315	60492515	+	832.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040426, intron 2 of 17)	CT-rich|Low_complexity|Low_complexity	18620.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	7.67	5.53	3.42	8.04	22.91	24.77	10.3	18.93	24.0	20.08	15.07	14.41
Merged-chr18-37933692-3	chr18	37933642	37933842	+	832.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	1734.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	2.02	9.81	2.28	13.27	6.55	6.59	1.33	4.96	11.01	7.03	8.54	7.52
Merged-chr3-88407188-3	chr3	88407078	88407278	+	832.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3219.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	13.73	19.87	19.4	8.04	18.82	24.77	7.97	9.87	20.65	16.07	12.56	8.46
Merged-chr12-99284636-3	chr12	99284562	99284762	+	832.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-121854.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	17.36	2.52	15.97	11.26	12.68	5.96	8.64	20.58	11.6	10.54	12.06	7.83
Merged-chr14-118098473-3	chr14	118098364	118098564	+	832.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	34301.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	4.85	6.79	6.85	9.65	9.82	11.29	6.98	12.95	20.85	19.08	44.22	18.17
Merged-chr7-110123005-3	chr7	110122879	110123079	+	832.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009516, intron 1 of 10)	CpG	920.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	18.98	14.34	10.84	7.24	18.41	3.76	13.29	9.87	12.59	10.54	10.55	6.58
Merged-chr4-3986318-3	chr4	3986226	3986426	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	33337.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	14.13	4.28	11.98	13.67	16.36	12.86	12.95	26.3	20.65	7.53	27.64	7.83
Merged-chr1-105890746-1	chr1	105890646	105890846	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99536.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	1.21	2.52	9.13	3.22	2.45	8.78	5.98	7.12	4.33	6.03	2.51	4.07
Merged-chr17-13056354-2	chr17	13056257	13056457	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4077.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	4.04	3.52	8.56	4.02	21.27	14.42	5.98	6.22	16.72	15.06	16.58	6.27
Merged-chr11-4973424-1	chr11	4973324	4973524	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-13400.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	6.06	5.28	11.41	8.04	8.18	10.35	7.64	7.88	10.82	9.54	15.07	5.95
Merged-chr10-120167669-2	chr10	120167561	120167761	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 6 of 11)	RLTR28|LTR|ERVL	33936.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.23	8.05	5.7	7.64	3.68	8.47	3.32	5.41	21.05	4.52	16.58	10.65
Merged-chr13-100398808-2	chr13	100398700	100398900	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	54064.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	2.52	1.14	3.22	2.45	4.39	7.97	5.44	12.98	3.01	6.53	7.83
Merged-chr15-90678693-3	chr15	90678594	90678794	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	694.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	10.09	8.05	7.42	2.41	22.09	18.81	7.97	17.55	13.18	8.03	8.04	11.59
Merged-chr8-72033080-2	chr8	72032971	72033171	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-23445.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	10.09	11.82	9.7	11.66	0.0	0.0	0.0	0.0	14.95	6.53	16.08	10.02
Merged-chr16-94607575-1	chr16	94607475	94607675	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-3844.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.23	4.53	13.12	3.22	4.5	5.64	7.97	9.03	9.05	4.02	9.55	8.77
Merged-chr4-133752787-4	chr4	133752724	133752924	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	787.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	9.69	11.82	5.7	2.82	13.91	13.17	8.64	4.01	6.49	4.52	14.57	11.59
Merged-chr6-56485255-1	chr6	56485155	56485355	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115621.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	3.63	1.76	2.85	11.26	4.5	5.33	6.31	10.01	3.93	7.03	14.57	4.07
Merged-chr7-80202114-3	chr7	80202007	80202207	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	3666.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.06	9.31	28.52	10.46	17.18	16.62	21.59	43.29	15.54	13.05	17.59	18.17
Merged-chr9-56207315-2	chr9	56207225	56207425	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 7 of 7)	exon (NM_172924, exon 7 of 7)	-46255.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.25	2.52	1.71	4.02	5.32	11.6	8.64	11.92	12.19	10.04	14.57	5.64
Merged-chr2-72984394-3	chr2	72984294	72984494	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045269, intron 1 of 2)	intron (NR_045269, intron 1 of 2)	-3948.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.46	10.56	17.68	11.66	13.5	15.05	19.93	20.47	12.59	14.56	13.57	9.71
Merged-chr11-53457227-1	chr11	53457127	53457327	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290789)	promoter-TSS (NM_001290789)	22.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	2.83	3.52	3.42	4.02	11.86	6.27	5.98	11.33	8.85	2.51	6.53	1.25
Merged-chr13-102666941-3	chr13	102666840	102667040	+	832.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26607.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	11.31	11.82	19.4	9.65	12.68	9.41	5.65	12.36	18.1	7.03	10.05	15.04
Merged-chr5-125147397-3	chr5	125147382	125147582	+	832.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	31732.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	14.13	7.29	5.13	5.23	4.91	22.58	6.98	5.52	13.57	4.52	9.55	3.76
Merged-chr18-12760416-3	chr18	12760329	12760529	+	832.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19074.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	2.02	1.51	14.26	14.88	11.86	8.78	11.63	15.84	12.0	9.54	19.6	15.98
Merged-chr3-109323958-3	chr3	109323825	109324025	+	832.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16758.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	11.71	7.04	3.42	5.23	13.5	5.64	8.64	5.5	11.21	11.55	12.56	3.45
Merged-chr1-181246675-1	chr1	181246575	181246775	+	832.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-34697.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	1.51	1.14	2.82	7.77	3.14	5.31	3.5	4.92	6.53	2.51	2.51
Merged-chr1-127202450-3	chr1	127202362	127202562	+	832.399963	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2524.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	10.09	7.29	6.85	15.28	18.41	20.7	16.61	29.24	15.93	11.55	21.1	12.22
Merged-chr6-108146627-3	chr6	108146536	108146736	+	832.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	38947.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	11.71	12.32	10.27	28.15	6.95	2.51	1.66	13.32	12.39	11.05	11.05	9.71
Merged-chr3-104092953-2	chr3	104092855	104093055	+	832.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133853, intron 3 of 21)	intron (NM_133853, intron 3 of 21)	-124639.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	5.65	6.04	14.26	7.64	24.96	37.94	34.21	28.23	11.8	12.55	12.56	2.82
Merged-chr13-98589115-3	chr13	98589031	98589231	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	48279.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	9.69	9.56	7.99	10.05	8.59	9.41	9.63	10.29	29.31	7.03	36.18	6.58
Merged-chr12-46818834-4	chr12	46818717	46818917	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-42.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.4	4.78	7.42	4.02	10.23	6.9	12.29	11.36	17.9	15.57	9.55	6.58
Merged-chr2-120576272-3	chr2	120576199	120576399	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	8628.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	8.48	10.82	13.69	16.49	6.55	13.48	8.64	9.67	15.14	13.56	9.55	7.21
Merged-chr1-45917354-2	chr1	45917285	45917485	+	832.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8209.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	2.02	3.02	3.42	3.22	9.82	5.64	6.31	10.82	11.41	9.54	10.55	5.64
Merged-chr8-86611009-1	chr8	86610909	86611109	+	832.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-13034.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	3.23	6.04	9.13	8.04	3.27	13.48	7.64	7.37	6.88	5.02	10.55	2.51
Merged-chr8-75103590-3	chr8	75103462	75103662	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-5947.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.08	16.6	1.71	2.82	13.91	22.58	1.33	3.25	9.05	19.58	4.52	8.77
Merged-chr1-106561593-3	chr1	106561502	106561702	+	832.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-14971.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	10.09	12.58	22.25	9.65	8.18	8.15	9.63	17.22	16.72	9.04	20.1	8.14
Merged-chr10-51535496-3	chr10	51535407	51535607	+	832.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	44609.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	11.71	6.04	13.12	11.66	16.77	26.03	26.57	8.58	24.59	16.07	15.07	17.23
Merged-chr5-115897278-3	chr5	115897180	115897380	+	832.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007708, intron 8 of 46)	intron (NM_007708, intron 8 of 46)	51624.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	8.08	5.53	11.41	9.65	9.41	18.19	7.31	11.36	12.0	7.53	13.06	13.47
Merged-chr4-47312904-1	chr4	47312804	47313004	+	832.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40318.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.81	1.51	0.0	1.61	6.55	7.21	11.29	8.94	4.92	9.04	6.03	2.82
Merged-chr18-57052328-1	chr18	57052228	57052428	+	832.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76949.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	4.85	1.51	1.14	0.8	9.0	12.54	7.64	12.36	8.46	4.02	5.53	2.51
Merged-chr9-41207960-2	chr9	41207849	41208049	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1794.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	12.52	7.04	6.28	11.26	15.96	12.86	4.65	5.38	18.49	21.59	24.62	8.14
Merged-chr8-61875492-3	chr8	61875390	61875590	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 2 of 21)	intron (NM_001293772, intron 2 of 21)	27200.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.88	14.59	14.83	10.46	17.18	27.91	13.29	30.53	18.29	20.08	15.07	12.22
Merged-chr15-93953743-2	chr15	93953644	93953844	+	832.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26633.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	12.92	6.54	2.85	6.44	6.95	8.78	5.65	19.96	19.87	4.52	18.09	13.78
Merged-chr13-112998547-3	chr13	112998453	112998653	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001037914, exon 6 of 7)	exon (NM_001037914, exon 6 of 7)	4685.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	10.5	13.33	2.28	16.49	3.27	3.45	3.32	5.58	12.19	6.03	10.55	5.95
Merged-chr13-45457556-2	chr13	45457413	45457613	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49931.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	6.06	5.53	15.4	8.85	7.36	19.76	13.95	16.09	3.74	1.51	2.51	2.82
Merged-chr9-118489793-3	chr9	118489658	118489858	+	832.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11569.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	6.86	8.8	6.85	10.86	5.73	9.72	12.29	7.32	9.24	6.53	19.09	11.59
Merged-chr18-50014738-3	chr18	50014636	50014836	+	832.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-16248.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	8.08	14.59	8.56	10.05	11.86	17.87	9.97	12.06	23.01	12.05	22.11	6.58
Merged-chr2-91696386-2	chr2	91696299	91696499	+	832.1999509999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355416, intron 1 of 17)	B4A|SINE|B4	14193.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.81	2.01	4.56	0.0	25.36	21.95	8.97	13.99	13.18	9.04	17.08	7.83
Merged-chr3-101595418-3	chr3	101595319	101595519	+	832.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	9288.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.27	12.07	26.24	12.07	11.05	7.21	12.62	20.55	11.6	8.03	12.56	10.96
Merged-chr2-91090417-1	chr2	91090317	91090517	+	832.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6261.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.04	3.77	3.42	4.83	11.05	7.53	6.98	5.97	14.95	5.02	11.05	4.07
Merged-chr2-145741798-3	chr2	145741710	145741910	+	832.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	40615.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	8.08	3.27	9.13	6.03	9.41	16.31	11.29	15.42	20.26	15.06	21.61	5.95
Merged-chr1-59464863-1	chr1	59464763	59464963	+	832.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17284.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	6.46	2.52	4.56	12.87	13.91	7.84	10.96	10.99	3.54	8.03	5.02	3.13
Merged-chr17-86337284-2	chr17	86337183	86337383	+	832.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-50105.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.65	1.76	3.99	16.09	6.55	9.72	10.96	14.19	7.87	4.52	20.6	8.77
Merged-chr15-30609322-2	chr15	30609220	30609420	+	832.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-429806.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.02	3.77	4.56	6.44	2.86	4.7	9.63	8.83	9.24	20.08	24.12	12.53
Merged-chr2-117374397-3	chr2	117374279	117374479	+	832.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31502.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	7.27	17.61	6.28	14.48	6.14	7.84	12.95	8.58	13.96	9.04	9.55	13.47
Merged-chr2-137119003-2	chr2	137118924	137119124	+	832.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2504.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	11.71	7.29	5.7	12.87	11.05	24.15	15.28	13.57	3.54	7.53	7.03	5.64
Merged-chr11-98801607-2	chr11	98801504	98801704	+	832.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001361932)	TTS (NM_001361932)	2950.0	NM_001361934	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	11.31	8.05	6.28	5.63	13.91	9.09	10.96	14.1	7.67	5.52	5.02	9.08
Merged-chr5-147459940-3	chr5	147459847	147460047	+	832.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	29791.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	14.94	10.56	11.98	21.32	22.5	7.84	9.3	20.58	16.33	12.55	24.62	18.8
Merged-chr4-155708755-3	chr4	155708644	155708844	+	832.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 1 of 4)	B2_Mm2|SINE|B2	3929.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	8.88	9.56	4.56	8.45	20.05	10.66	8.64	16.4	14.16	7.03	19.6	12.53
Merged-chr9-97018978-1	chr9	97018878	97019078	+	832.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-623.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	3.23	1.51	3.42	0.8	4.5	2.2	3.32	4.68	8.06	5.52	17.59	11.28
Merged-chr17-34283186-2	chr17	34283074	34283274	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010378, exon 4 of 5)	3' UTR (NM_010378, exon 4 of 5)	4597.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	8.88	10.82	2.28	7.64	3.68	8.78	1.33	1.32	8.26	6.53	4.02	8.14
Merged-chr10-81411040-1	chr10	81410940	81411140	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152732, intron 1 of 1)	intron (NR_152732, intron 1 of 1)	1465.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.65	2.77	0.0	2.82	3.27	4.7	4.98	3.39	4.33	2.01	9.55	3.45
Merged-chr8-46680825-1	chr8	46680725	46680925	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M6|LINE|L1	58690.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	1.01	1.14	4.42	4.09	2.51	6.98	7.71	6.49	0.0	0.0	7.52
Merged-chr3-55113167-3	chr3	55113033	55113233	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	967.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	6.86	1.51	1.14	4.83	6.14	6.27	6.98	4.63	5.51	8.54	1.51	9.4
Merged-chr13-23449314-1	chr13	23449214	23449414	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	16587.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	8.08	6.54	0.0	8.04	2.05	8.78	3.32	6.31	2.75	4.02	2.51	2.82
Merged-chr1-92831781-1	chr1	92831681	92831881	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_016696, exon 1 of 9)	5' UTR (NM_016696, exon 1 of 9)	136.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	7.27	3.02	10.27	6.84	8.18	2.51	2.33	7.4	5.51	4.02	10.55	5.33
Merged-chr4-154981921-1	chr4	154981821	154982021	+	832.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001305804)	TTS (NM_001305804)	17798.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	6.06	5.28	4.56	2.82	6.95	6.59	1.99	3.62	20.26	11.55	11.56	11.28
Merged-chr13-91037492-1	chr13	91037392	91037592	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 4 of 7)	PB1D7|SINE|Alu	114370.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	4.44	2.77	2.28	8.04	9.82	6.59	7.97	14.05	4.52	7.53	11.05	2.82
Merged-chr5-74628002-3	chr5	74627886	74628086	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359074, intron 2 of 10)	intron (NM_001359074, intron 2 of 10)	49886.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	6.46	9.06	18.25	5.63	10.64	21.95	12.95	14.41	14.55	9.54	17.08	7.83
Merged-chr11-26789445-3	chr11	26789348	26789548	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4340.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	5.65	8.55	12.55	17.29	6.14	5.33	6.31	12.06	13.77	8.54	10.55	9.4
Merged-chr12-55467030-3	chr12	55466918	55467118	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25629.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.27	3.77	14.26	3.22	23.73	14.42	20.26	19.18	18.29	17.07	10.05	5.64
Merged-chr12-32435297-1	chr12	32435197	32435397	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56508.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.44	3.77	7.99	8.04	11.45	2.82	4.65	7.77	6.49	11.05	9.04	5.01
Merged-chr13-108043122-1	chr13	108043022	108043222	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1352.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	2.02	1.51	2.28	1.61	1.23	2.2	4.32	6.06	4.92	2.51	3.52	2.19
Merged-chr6-100667010-1	chr6	100666910	100667110	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181590, intron 2 of 10)	intron (NM_181590, intron 2 of 10)	4147.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	3.23	4.78	3.42	4.83	5.73	8.78	2.66	8.58	12.19	2.01	3.01	0.63
Merged-chr14-25413727-3	chr14	25413639	25413839	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45446.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	9.69	13.83	19.97	13.27	13.5	12.23	16.28	12.2	5.11	13.56	13.57	5.33
Merged-chr9-57524616-1	chr9	57524516	57524716	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	3384.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	10.5	2.01	4.56	2.01	4.09	4.7	6.98	6.87	8.65	3.51	3.01	6.27
Merged-chrX-103530043-2	chrX	103529952	103530152	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15448.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	12.11	2.52	0.0	10.86	6.14	3.76	11.29	12.64	10.42	4.02	6.03	0.63
Merged-chr8-66388877-2	chr8	66388774	66388974	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	2573.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.85	6.29	6.28	10.05	8.18	5.64	6.98	14.97	10.42	12.55	10.55	2.51
Merged-chr2-104450906-2	chr2	104450808	104451008	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010434, intron 2 of 15)	L2a|LINE|L2	-21968.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	8.88	5.53	16.54	28.15	6.55	6.27	5.65	17.97	13.96	6.53	11.56	3.13
Merged-chr3-9752470-1	chr3	9752370	9752570	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001195031, exon 3 of 9)	5' UTR (NM_001195031, exon 3 of 9)	81209.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.04	6.54	15.4	8.45	8.59	2.82	7.64	15.34	11.8	5.52	2.01	3.45
Merged-chr8-121971862-1	chr8	121971762	121971962	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	-6162.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	4.44	1.51	4.56	8.45	5.73	8.15	6.64	12.45	3.54	7.53	6.53	1.57
Merged-chr2-164067346-1	chr2	164067246	164067446	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	3756.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	2.42	7.29	12.55	8.85	7.77	5.33	5.31	11.19	7.47	5.02	1.51	4.7
Merged-chr11-32551790-1	chr11	32551690	32551890	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	18524.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.83	0.0	0.0	1.21	1.64	4.39	7.64	7.26	0.39	2.51	0.0	1.25
Merged-chr13-41359549-3	chr13	41359447	41359647	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-546.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	15.75	9.81	11.98	10.46	5.73	11.29	9.97	14.92	10.82	3.51	11.05	12.84
Merged-chr14-25479944-2	chr14	25479851	25480051	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	20766.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.23	5.03	2.28	6.44	7.36	5.33	4.98	6.28	22.03	21.59	27.13	16.92
Merged-chr6-29697183-1	chr6	29697083	29697283	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	2969.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	5.65	16.6	11.98	1.61	6.55	8.78	3.32	0.62	4.33	4.52	4.52	3.13
Merged-chr13-51908753-3	chr13	51908652	51908852	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62077.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	10.5	4.78	19.4	8.85	11.45	26.97	14.28	20.89	14.16	19.58	11.56	9.71
Merged-chr2-165299966-1	chr2	165299866	165300066	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12128.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	5.65	5.28	9.13	3.62	5.32	7.84	1.99	11.78	1.38	3.01	4.52	8.77
Merged-chr8-117342617-1	chr8	117342517	117342717	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6553.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.48	4.02	1.14	5.23	12.27	7.84	3.65	3.06	6.29	7.03	2.01	3.13
Merged-chr14-26652088-1	chr14	26651988	26652188	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007479, intron 3 of 5)	B2_Mm2|SINE|B2	13954.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	8.08	7.55	0.0	4.83	1.64	15.05	2.66	3.45	6.1	7.53	4.52	5.01
Merged-chr13-24937555-3	chr13	24937446	24937646	+	831.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_102323, exon 1 of 2)	non-coding (NR_102323, exon 1 of 2)	115.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	6.46	8.55	8.56	14.08	12.68	8.78	12.95	9.28	8.85	8.54	9.04	12.53
Merged-chr13-9152471-2	chr13	9152380	9152580	+	831.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	58599.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.63	2.26	17.11	10.46	10.23	8.78	6.64	13.68	16.72	4.52	14.07	5.64
Merged-chr2-168229249-3	chr2	168229227	168229427	+	831.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	1052.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	6.86	6.54	7.42	4.42	3.27	6.59	6.98	5.64	8.06	6.53	6.03	9.4
Merged-chr3-95654713-3	chr3	95654618	95654818	+	831.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-4003.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	11.71	9.31	16.54	20.51	11.45	5.96	10.3	14.64	13.96	6.03	15.07	14.41
Merged-chr8-115568564-3	chr8	115568462	115568662	+	831.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138332.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	17.36	13.58	10.84	7.64	22.09	13.8	11.29	13.74	10.03	11.55	13.06	10.96
Merged-chr8-31112484-3	chr8	31112381	31112581	+	831.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	635.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	10.09	6.04	15.4	10.86	8.59	6.59	9.63	13.12	11.21	9.04	15.07	13.47
Merged-chr2-32360951-3	chr2	32360858	32361058	+	831.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2052.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	14.94	10.06	13.12	11.26	17.59	10.03	5.65	13.93	12.0	9.04	10.05	17.54
Merged-chr1-136636786-3	chr1	136636632	136636832	+	831.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11831.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	12.11	8.3	15.4	6.44	4.09	7.53	9.3	7.12	9.64	4.52	9.04	10.96
Merged-chr8-36149576-2	chr8	36149475	36149675	+	831.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6435.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	10.09	15.85	17.11	16.49	13.91	10.66	10.3	16.07	0.2	1.0	0.0	0.0
Merged-chr8-126537498-3	chr8	126537386	126537586	+	831.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55950.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	23.02	7.29	10.84	11.26	21.27	18.81	8.97	21.81	13.18	13.05	20.1	14.41
Merged-chr7-128391522-4	chr7	128391435	128391635	+	831.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26637.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	3.63	10.31	13.12	5.23	6.55	10.03	5.98	4.18	8.06	6.03	10.05	6.58
Merged-chr19-24432205-1	chr19	24432105	24432305	+	831.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	45269.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	1.62	1.01	3.42	3.22	0.82	4.39	4.32	1.6	8.26	5.52	22.11	9.08
Merged-chr7-90026203-3	chr7	90026096	90026296	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2963.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	15.34	7.29	10.84	3.62	6.55	26.34	11.96	4.46	18.49	13.56	12.06	4.39
Merged-chr12-105785920-3	chr12	105785825	105786025	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	1228.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	12.92	11.82	6.85	5.63	6.14	9.41	4.65	12.42	9.05	10.04	8.54	9.08
Merged-chr18-46524498-3	chr18	46524376	46524576	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173423, exon 2 of 3)	exon (NM_173423, exon 2 of 3)	1495.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	15.75	8.55	13.12	9.25	9.41	8.47	9.97	9.9	10.23	6.53	14.07	10.65
Merged-chr8-107269385-3	chr8	107269268	107269468	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	MTE2b|LTR|ERVL-MaLR	13204.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	4.44	5.53	9.13	5.23	11.86	18.19	20.26	13.49	22.82	14.06	19.09	25.06
Merged-chr5-140568463-3	chr5	140568380	140568580	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3413.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	8.88	11.07	11.41	6.03	15.96	12.86	6.98	6.93	17.7	15.57	8.04	12.22
Merged-chr5-105528219-2	chr5	105528106	105528306	+	831.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	8735.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.86	5.03	19.4	14.88	18.82	16.93	11.29	22.21	4.72	1.0	4.02	0.63
Merged-chr17-50513025-3	chr17	50512938	50513138	+	831.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	3491.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	15.34	14.09	22.25	12.87	7.77	9.72	1.99	9.17	25.77	18.58	13.06	8.77
Merged-chr2-11512324-1	chr2	11512224	11512424	+	831.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	ORR1C1|LTR|ERVL-MaLR	-10234.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	10.09	3.02	3.99	2.41	11.45	8.15	5.31	11.52	13.96	8.03	5.02	5.33
Merged-chr7-54861421-1	chr7	54861321	54861521	+	831.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	26176.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.81	0.5	1.14	1.61	8.59	13.17	5.31	8.66	1.77	0.0	2.01	1.25
Merged-chr4-40829173-2	chr4	40829138	40829338	+	831.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	B2_Mm2|SINE|B2	20900.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	6.46	4.53	0.57	2.01	6.14	15.37	8.64	3.76	5.9	13.05	9.55	3.13
Merged-chr4-141157722-3	chr4	141157607	141157807	+	831.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	9785.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	5.25	8.05	7.99	8.45	16.36	12.23	7.97	21.25	25.57	23.6	18.09	10.96
Merged-chr17-34895203-3	chr17	34895029	34895229	+	831.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198886, intron 1 of 1)	CpG	570.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	10.09	2.52	12.55	3.62	16.36	8.47	6.64	5.8	7.87	4.02	5.53	4.7
Merged-chr18-32369961-3	chr18	32369868	32370068	+	831.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-7249.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.46	7.04	10.84	14.08	13.91	12.54	7.97	11.66	14.36	8.03	25.12	6.89
Merged-chr17-88116388-4	chr17	88116250	88116450	+	831.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-9162.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	4.44	3.77	5.7	6.44	2.05	6.9	5.65	4.93	3.74	4.02	1.51	8.14
Merged-chr2-35211707-5	chr2	35211595	35211795	+	831.695251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-10575.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	2.83	6.04	3.99	3.22	5.73	5.02	6.98	2.86	2.36	4.02	9.55	3.13
Merged-chr11-61930828-3	chr11	61930728	61930928	+	831.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-571.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	27.86	14.59	10.27	11.26	11.05	13.48	5.98	9.56	14.75	11.55	11.56	8.77
Merged-chr3-138966497-3	chr3	138966398	138966598	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 4 of 13)	intron (NM_001356388, intron 4 of 13)	108703.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	9.69	5.79	18.25	20.51	10.64	2.51	12.62	13.21	10.82	3.01	18.09	13.78
Merged-chr10-127171086-3	chr10	127170958	127171158	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008080, exon 10 of 11)	exon (NM_008080, exon 10 of 11)	5227.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	14.94	19.62	12.55	13.67	21.27	24.15	14.62	16.26	12.59	17.07	17.59	12.53
Merged-chrY-1291701-1	chrY	1291601	1291801	+	831.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5088.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	11.71	7.04	7.42	3.62	7.36	6.59	12.29	7.77	5.31	10.54	8.54	8.77
Merged-chr12-35067825-1	chr12	35067725	35067925	+	831.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	20636.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	1.21	2.52	2.28	0.4	8.18	5.64	6.64	5.8	4.52	8.03	4.52	4.39
Merged-chr7-101548359-1	chr7	101548259	101548459	+	831.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	7443.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	9.69	2.77	1.14	3.62	8.59	20.7	4.65	3.22	22.82	23.6	19.6	7.83
Merged-chr8-79448737-1	chr8	79448637	79448837	+	831.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-49269.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	8.88	4.78	7.99	8.04	11.05	13.8	10.3	7.4	8.26	5.02	13.06	2.19
Merged-chr18-55391778-3	chr18	55391695	55391895	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-399204.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	15.75	7.29	14.83	15.28	13.5	15.37	9.3	12.25	11.21	8.54	35.68	7.83
Merged-chr7-120098602-3	chr7	120098519	120098719	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3807.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	8.08	6.79	2.28	6.84	9.41	15.37	6.31	8.64	15.74	8.03	23.62	5.64
Merged-chr8-39636180-2	chr8	39636056	39636256	+	831.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	6522.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	9.29	13.08	10.27	2.01	12.27	27.28	12.62	10.68	4.72	9.04	3.01	5.01
Merged-chr2-45116050-5	chr2	45115849	45116049	+	831.6400150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	1493.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.04	5.28	2.28	0.0	8.59	4.08	2.99	2.24	8.85	15.57	10.55	6.58
Merged-chr2-127006816-3	chr2	127006705	127006905	+	831.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	14.13	20.12	21.68	21.32	11.86	8.47	8.97	10.29	14.55	10.54	11.56	12.84
Merged-chr18-11941343-3	chr18	11941259	11941459	+	831.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146287, exon 9 of 10)	exon (NM_001146287, exon 9 of 10)	-100921.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	16.96	14.09	11.41	16.09	21.68	19.13	19.6	31.32	14.95	5.52	12.06	7.52
Merged-chrX-73984795-3	chrX	73984712	73984912	+	831.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18455.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	10.09	9.31	13.69	12.47	15.96	16.62	9.97	10.12	12.19	21.09	27.13	7.83
Merged-chr1-34468437-4	chr1	34468333	34468533	+	831.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 6 of 14)	intron (NM_011206, intron 6 of 14)	8687.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	3.63	7.29	1.14	9.25	8.59	4.08	4.32	4.96	8.46	8.54	5.53	4.07
Merged-chr8-61665175-3	chr8	61665059	61665259	+	831.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73990.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	9.29	5.79	13.12	17.29	20.05	11.29	16.61	22.12	10.62	7.53	12.56	5.01
Merged-chr2-4551444-5	chr2	4551328	4551528	+	831.580017	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	MTEa|LTR|ERVL-MaLR	-8326.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	8.08	11.57	9.13	5.23	6.55	5.33	3.65	7.79	4.72	8.03	5.02	9.4
Merged-chr19-42795100-3	chr19	42794972	42795172	+	831.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081257, intron 11 of 11)	intron (NM_001081257, intron 11 of 11)	-15094.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	8.48	8.3	13.69	6.44	14.32	6.59	1.33	7.79	17.7	15.57	15.58	9.71
Merged-chr19-4212940-3	chr19	4212847	4213047	+	831.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1291.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	10.5	15.85	10.27	10.05	9.41	24.15	13.62	12.56	15.54	12.05	12.06	8.46
Merged-chr10-97389772-1	chr10	97389672	97389872	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33706.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	3.23	1.26	4.56	9.65	10.23	5.96	13.95	13.04	5.9	1.51	10.55	1.88
Merged-chr10-17178073-2	chr10	17177961	17178161	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82279.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	9.29	3.02	2.28	5.23	4.91	5.64	7.97	12.93	14.16	10.54	16.58	3.45
Merged-chr6-86641866-1	chr6	86641766	86641966	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	13692.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	16.96	11.07	9.7	3.62	3.68	2.51	0.33	0.03	1.97	1.51	1.0	0.0
Merged-chr16-77041746-3	chr16	77041646	77041846	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	27677.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.23	7.29	9.7	15.69	15.96	23.83	27.9	22.99	15.93	9.54	27.13	18.8
Merged-chr3-27677738-3	chr3	27677644	27677844	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	32708.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	8.88	9.31	7.99	2.82	16.77	11.6	23.92	29.72	17.31	13.56	17.08	15.35
Merged-chr4-30959040-1	chr4	30958940	30959140	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	294444.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	1.21	2.52	2.28	1.21	2.05	5.64	7.64	6.14	3.74	1.51	4.02	3.13
Merged-chr6-6230504-1	chr6	6230404	6230604	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13331.0	NM_001177572	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.4	0.0	2.85	0.8	2.45	7.21	6.64	8.52	1.18	3.01	0.5	0.63
Merged-chr14-17746647-1	chr14	17746547	17746747	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	L1MB8|LINE|L1	85687.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.83	4.78	1.14	7.24	4.91	7.84	6.31	7.43	7.28	8.03	2.51	3.45
Merged-chr18-80277067-1	chr18	80276967	80277167	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025861, intron 4 of 5)	PB1D10|SINE|Alu	20761.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	9.69	4.02	6.85	11.26	2.86	5.96	8.3	11.02	4.33	2.51	5.53	4.07
Merged-chr1-153981020-2	chr1	153980901	153981101	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81072.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.04	8.05	17.11	13.27	10.23	10.98	8.64	15.59	7.87	9.54	9.55	3.45
Merged-chr19-43527359-2	chr19	43527248	43527448	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2743.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.81	6.29	9.13	8.85	6.14	8.47	5.65	5.21	12.39	6.03	7.03	10.96
Merged-chr5-114979196-1	chr5	114979096	114979296	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-8134.0	NM_009327	21405.0	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	1.21	4.02	0.0	5.23	0.82	2.51	4.65	0.53	2.95	1.0	2.01	2.51
Merged-chr18-80373098-3	chr18	80372989	80373189	+	831.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8835.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	9.29	5.53	10.27	12.07	17.59	6.9	19.6	16.6	10.42	12.05	8.54	5.01
Merged-chr18-69196946-3	chr18	69196842	69197042	+	831.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147550.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	19.38	10.56	20.54	5.63	22.91	22.58	11.29	22.82	12.98	15.57	8.04	8.14
Merged-chr6-87914633-2	chr6	87914532	87914732	+	831.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173737, exon 2 of 7)	exon (NM_173737, exon 2 of 7)	656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	11.71	7.04	9.7	12.47	18.82	15.05	6.31	10.35	6.88	13.05	16.08	12.84
Merged-chr10-95210881-2	chr10	95210764	95210964	+	831.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-65039.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	16.96	2.52	9.13	6.44	7.77	7.84	5.65	8.8	14.75	5.52	12.56	10.34
Merged-chr10-93257482-2	chr10	93257376	93257576	+	831.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	53683.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	13.33	5.03	5.13	14.08	8.59	11.6	11.96	13.35	6.1	6.03	16.58	4.07
Merged-chr9-105139398-3	chr9	105139310	105139510	+	831.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5672.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	5.65	8.8	6.85	12.47	10.64	8.78	5.31	10.65	17.9	6.03	18.59	6.27
Merged-chr4-132483173-2	chr4	132483075	132483275	+	831.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19254.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	6.86	5.03	4.56	14.88	14.32	8.78	7.31	13.35	13.77	16.07	10.55	7.52
Merged-chr7-127750713-2	chr7	127750607	127750807	+	831.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172748, intron 5 of 10)	intron (NM_172748, intron 5 of 10)	3932.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	1.51	1.14	0.0	11.45	12.86	6.64	8.41	18.69	9.54	20.6	6.27
Merged-chr11-77446790-3	chr11	77446748	77446948	+	831.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17065.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	9.69	9.56	6.85	10.05	8.18	21.95	10.63	10.21	16.92	18.08	13.06	4.39
Merged-chr5-29895130-3	chr5	29895027	29895227	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117987.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	14.54	9.81	18.83	4.83	9.82	9.41	4.98	2.78	11.8	3.51	13.06	1.88
Merged-chr11-74981593-3	chr11	74981436	74981636	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	55664.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.04	6.29	9.13	3.62	6.95	10.98	3.32	9.06	8.06	6.03	9.55	6.58
Merged-chr4-19892357-3	chr4	19892252	19892452	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	30214.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	10.09	3.27	15.4	10.86	28.64	11.29	8.64	22.63	11.01	13.05	23.62	10.96
Merged-chr2-70889217-3	chr2	70889106	70889306	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-63726.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	8.08	9.06	14.83	7.64	13.91	8.78	8.97	12.08	25.37	18.08	16.08	11.28
Merged-chr4-56685372-3	chr4	56685261	56685461	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56064.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	14.13	11.82	14.83	18.1	7.77	20.7	12.62	18.31	9.64	8.03	13.06	7.21
Merged-chr19-32985215-3	chr19	32985144	32985344	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-171868.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	2.02	2.77	13.69	16.09	4.09	2.82	10.63	9.06	8.46	14.56	5.53	9.4
Merged-chr4-109143565-1	chr4	109143465	109143665	+	831.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-5652.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	6.06	3.77	3.42	5.63	8.59	10.66	14.28	17.24	2.36	6.53	4.52	2.51
Merged-chr11-87074124-3	chr11	87074024	87074224	+	831.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025638)	promoter-TSS (NM_025638)	13.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	19.38	10.82	11.41	11.26	7.77	15.99	8.3	11.86	16.13	15.06	14.57	7.21
Merged-chr3-87619268-3	chr3	87619162	87619362	+	831.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1703.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	6.06	7.29	5.7	8.85	6.55	15.05	10.63	8.36	8.65	13.05	21.61	10.34
Merged-chr5-65986997-3	chr5	65986895	65987095	+	831.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027961)	TTS (NR_027961)	17290.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	17.36	11.82	9.13	15.28	10.23	12.86	12.95	12.31	11.8	15.57	17.08	10.34
Merged-chr17-23739515-3	chr17	23739403	23739603	+	831.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	827.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	6.06	9.31	13.12	12.47	4.09	7.84	9.97	5.75	8.06	8.03	12.56	4.39
Merged-chr4-135960897-1	chr4	135960797	135960997	+	831.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008254, exon 8 of 9)	exon (NM_008254, exon 8 of 9)	-2828.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	4.04	5.03	3.42	4.83	5.73	10.66	9.3	5.52	7.08	9.04	7.03	6.89
Merged-chr9-95564393-3	chr9	95564283	95564483	+	831.244446	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4566.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.4	3.02	5.13	0.8	2.05	8.47	6.64	8.38	1.77	2.51	10.05	2.82
Merged-chr6-54285157-3	chr6	54285063	54285263	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	12341.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	10.5	7.8	26.24	19.71	25.77	10.98	18.93	18.0	12.78	13.56	35.68	10.96
Merged-chr1-150165853-3	chr1	150165757	150165957	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-909.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	8.48	6.04	13.12	8.85	11.86	12.23	9.63	10.93	11.21	7.03	7.03	8.14
Merged-chr11-32620177-3	chr11	32620081	32620281	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22374.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	9.29	7.04	1.14	12.07	12.68	10.66	3.99	8.89	7.47	4.52	18.59	11.59
Merged-chr4-125065689-3	chr4	125065558	125065758	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	-1.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	8.88	10.56	5.7	6.03	14.32	5.02	2.66	7.4	12.19	2.01	16.08	7.21
Merged-chr6-130954364-3	chr6	130954230	130954430	+	831.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	293032.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	15.34	12.58	7.42	15.69	9.82	13.17	6.64	13.71	9.83	5.02	6.03	10.96
Merged-chr10-39258479-3	chr10	39258404	39258604	+	831.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-94710.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	9.29	7.29	11.41	26.95	11.86	6.59	15.61	16.07	10.23	1.0	23.62	10.96
Merged-chr16-33937062-3	chr16	33936963	33937163	+	831.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29975.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	16.15	9.56	18.83	18.9	15.14	14.11	16.61	16.82	8.06	13.56	11.05	9.4
Merged-chr6-39275273-2	chr6	39275145	39275345	+	831.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-68472.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.46	3.27	9.13	3.22	23.73	10.03	11.63	15.28	13.18	12.05	8.04	6.58
Merged-chr3-105800767-2	chr3	105800708	105800908	+	831.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	CpG	573.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	8.48	8.05	7.42	12.47	7.36	10.98	15.28	5.55	14.95	16.57	11.56	15.98
Merged-chr12-25094731-6	chr12	25094574	25094774	+	831.163513	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010496, intron 2 of 2)	intron (NM_010496, intron 2 of 2)	1418.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	11.71	6.54	11.41	6.44	9.41	9.09	3.65	5.33	11.21	6.53	10.55	7.52
Merged-chr19-24265214-3	chr19	24265123	24265323	+	831.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008044, intron 4 of 4)	B3A|SINE|B2	15363.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	16.96	17.61	14.26	19.71	6.55	7.84	13.95	5.24	12.98	19.08	31.15	13.47
Merged-chr5-114315243-2	chr5	114315148	114315348	+	831.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164573, intron 1 of 30)	intron (NM_001164573, intron 1 of 30)	307.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	15.34	10.31	7.42	10.05	6.14	11.6	7.64	11.3	2.75	4.02	11.56	2.82
Merged-chr15-58888176-3	chr15	58888079	58888279	+	831.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1050.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	6.86	6.29	11.98	12.87	3.68	12.86	7.97	13.77	10.42	5.52	13.06	9.08
Merged-chr13-63258365-3	chr13	63258264	63258464	+	831.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18335.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	7.67	8.3	19.4	20.11	16.36	12.54	15.28	30.84	13.18	12.05	13.06	7.21
Merged-chr10-59265318-2	chr10	59265221	59265421	+	831.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43399.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	12.92	4.28	7.42	5.63	13.5	10.98	8.64	14.83	20.85	11.55	15.07	7.52
Merged-chr1-58618431-3	chr1	58618324	58618524	+	831.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32027.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	10.9	4.28	12.55	10.46	13.91	14.74	3.99	14.41	13.37	17.07	23.11	7.21
Merged-chr1-128832722-3	chr1	128832585	128832785	+	831.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAG)n|Simple_repeat|Simple_repeat	-240386.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.86	10.06	22.82	10.86	8.59	19.13	3.99	12.08	11.8	10.04	13.57	5.95
Merged-chr11-32561659-3	chr11	32561586	32561786	+	831.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	28420.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	9.29	6.29	18.83	12.87	14.73	7.84	20.93	36.7	11.6	6.53	14.57	10.34
Merged-chr7-99149246-3	chr7	99149132	99149332	+	831.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8088.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.88	7.8	11.41	8.04	16.77	6.27	7.97	9.53	23.8	13.05	24.12	12.84
Merged-chr1-120170495-2	chr1	120170397	120170597	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172074, intron 4 of 4)	intron (NM_001172074, intron 4 of 4)	49310.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	9.69	4.53	6.85	8.04	5.73	4.39	16.94	20.5	11.6	2.51	11.05	9.4
Merged-chr3-59206132-1	chr3	59206032	59206232	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4750.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.46	7.55	2.85	8.04	9.0	14.74	8.3	6.17	4.92	14.06	2.01	6.58
Merged-chr5-24602677-1	chr5	24602577	24602777	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-675.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	4.44	7.04	3.99	8.04	9.82	5.96	13.95	15.34	9.24	2.51	17.08	9.71
Merged-chr2-79349293-1	chr2	79349193	79349393	+	831.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048176, intron 5 of 12)	L1_Mur3|LINE|L1	79695.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	6.06	3.52	13.12	2.41	2.86	5.96	5.31	10.71	6.1	4.52	15.58	13.16
Merged-chr11-48826184-2	chr11	48826077	48826277	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053166)	promoter-TSS (NM_053166)	39.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.44	7.29	8.56	9.65	13.91	13.17	21.92	0.03	4.33	1.0	5.02	5.01
Merged-chrX-37091671-1	chrX	37091571	37091771	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026573)	TTS (NM_026573)	-6449.0	NM_026055	67248.0	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	1.62	3.77	4.56	3.22	3.27	1.25	6.98	9.0	2.36	0.0	5.53	0.0
Merged-chr4-32010993-1	chr4	32010893	32011093	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009316, intron 14 of 16)	intron (NM_009316, intron 14 of 16)	46886.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	1.62	2.01	9.7	9.25	6.14	6.27	7.64	9.2	7.47	5.52	7.54	3.76
Merged-chr8-85024554-2	chr8	85024468	85024668	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019652, intron 1 of 6)	intron (NM_019652, intron 1 of 6)	719.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	5.65	4.02	3.99	5.63	4.91	5.96	1.66	6.48	13.57	5.02	7.54	10.34
Merged-chr1-152529508-1	chr1	152529408	152529608	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95709.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	14.94	8.05	1.71	12.47	6.95	1.25	6.64	7.21	7.67	6.03	9.04	10.65
Merged-chr6-115909245-1	chr6	115909145	115909345	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-22682.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	5.25	7.04	3.42	6.03	7.77	18.19	4.65	10.12	8.26	4.52	7.54	0.94
Merged-chr14-70817448-1	chr14	70817348	70817548	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-35485.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	1.62	5.53	10.27	1.61	2.05	14.11	13.95	2.52	3.15	4.52	4.02	1.88
Merged-chr9-70848613-1	chr9	70848513	70848713	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86195.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	2.42	4.02	5.7	5.63	7.36	12.54	9.3	11.94	3.34	8.03	5.53	2.19
Merged-chr15-12356126-1	chr15	12356026	12356226	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001081064)	TTS (NM_001081064)	34630.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.04	0.5	4.56	3.22	2.05	1.88	8.97	6.9	0.79	0.5	0.5	1.25
Merged-chr16-65664914-1	chr16	65664814	65665014	+	831.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-102217.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	2.42	1.26	7.42	0.8	1.23	2.82	2.99	2.55	10.62	9.04	14.07	2.82
Merged-chr19-6036340-2	chr19	6036244	6036444	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10232.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	6.46	9.56	14.83	6.84	2.45	10.66	2.99	3.39	20.26	5.52	13.57	11.28
Merged-chrUn_JH584304-12347-1	chrUn_JH584304	12247	12447	+	831.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	47342.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.75	16.07	10.55	10.34
Merged-chr5-140110482-3	chr5	140110318	140110518	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	64500.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	1.62	1.26	7.99	6.44	13.09	2.51	10.96	16.51	5.11	4.52	6.53	9.4
Merged-chr9-89293528-1	chr9	89293428	89293628	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	82144.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.04	1.01	4.56	3.22	5.32	2.2	5.98	8.36	3.54	6.53	7.54	1.57
Merged-chr5-125380521-1	chr5	125380421	125380621	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	9496.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.44	4.78	0.0	4.02	8.18	13.17	0.33	0.81	3.15	1.0	1.51	0.94
Merged-chr13-67723990-1	chr13	67723890	67724090	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5183.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	6.86	4.02	5.7	4.83	5.32	10.03	11.63	5.86	8.65	11.05	12.06	7.83
Merged-chr3-19310886-1	chr3	19310786	19310986	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001122759, exon 1 of 13)	exon (NM_001122759, exon 1 of 13)	436.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	11.71	13.83	0.57	7.24	11.05	10.35	17.94	13.4	15.14	18.08	13.06	11.28
Merged-chr18-4171901-1	chr18	4171801	4172001	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	6069.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	2.42	3.77	2.28	3.22	5.32	5.64	7.31	14.16	11.8	4.02	6.53	5.33
Merged-chr3-51415378-2	chr3	51415319	51415519	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-597.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	3.63	5.53	0.0	4.02	8.18	7.53	6.64	9.0	9.44	10.04	5.53	11.28
Merged-chr3-9466426-1	chr3	9466326	9466526	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 4 of 8)	intron (NM_133218, intron 4 of 8)	63348.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	6.46	5.03	3.42	12.07	4.91	8.78	10.3	9.56	9.05	8.54	8.54	3.13
Merged-chr14-40975336-3	chr14	40975198	40975398	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8402.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	9.29	3.77	9.13	8.04	2.86	11.6	4.32	9.45	15.74	17.57	23.11	8.46
Merged-chr19-36833564-1	chr19	36833464	36833664	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	-668.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	2.02	2.26	1.14	3.22	5.32	1.57	6.98	5.86	8.06	6.03	1.51	4.07
Merged-chr3-15959094-2	chr3	15958994	15959194	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	47238.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	7.27	5.28	10.84	14.08	12.27	9.72	11.29	17.44	1.38	0.5	0.5	0.63
Merged-chr10-111770131-1	chr10	111770031	111770231	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	104245.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	4.85	5.28	14.83	5.23	15.14	6.59	11.63	7.4	7.47	5.02	6.53	3.76
Merged-chr18-61122801-1	chr18	61122701	61122901	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	Lx8|LINE|L1	5333.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	1.62	3.27	9.7	2.01	7.36	4.7	15.94	12.56	4.33	1.51	9.04	1.25
Merged-chr16-33685487-2	chr16	33685446	33685646	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	1080.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.85	8.3	9.13	9.65	3.68	6.27	3.99	6.14	4.13	2.51	6.53	1.57
Merged-chr7-30431973-3	chr7	30431866	30432066	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91B|DNA|hAT-Tip100	8691.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	13.33	14.59	0.0	4.42	9.82	19.44	4.98	4.96	17.9	10.54	9.55	3.76
Merged-chr9-22531347-1	chr9	22531247	22531447	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 5 of 22)	MTEa|LTR|ERVL-MaLR	55632.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.4	1.76	3.42	3.22	7.36	3.76	4.32	7.65	1.38	3.01	4.52	1.88
Merged-chr9-32466727-1	chr9	32466627	32466827	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72742.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	2.83	1.51	3.42	2.82	4.91	4.08	6.64	3.06	1.57	1.0	2.51	2.51
Merged-chr7-6940981-3	chr7	6940905	6941105	+	830.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	35657.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	18.57	11.07	8.56	15.69	13.5	12.86	13.62	13.88	11.8	13.56	9.04	3.76
Merged-chr13-81208214-3	chr13	81208106	81208306	+	830.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	244132.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.08	4.28	15.4	12.47	20.46	5.33	12.62	27.5	16.13	8.54	15.07	11.28
Merged-chr10-51405354-2	chr10	51405268	51405468	+	830.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75244.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	3.23	3.77	9.13	3.62	12.68	13.8	6.31	17.24	12.39	12.05	25.12	12.53
Merged-chr17-24745742-3	chr17	24745641	24745841	+	830.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7247.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	9.69	10.56	9.13	8.85	13.5	17.25	3.32	10.63	13.77	15.06	14.07	14.41
Merged-chr7-123240295-2	chr7	123240183	123240383	+	830.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146198, intron 5 of 16)	intron (NM_146198, intron 5 of 16)	25417.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.63	5.03	3.42	8.85	9.82	2.51	6.98	10.54	10.62	9.54	14.07	6.89
Merged-chr7-35076714-3	chr7	35076607	35076807	+	830.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20141.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	14.54	10.31	14.26	10.86	8.18	7.53	6.31	11.44	17.9	10.54	16.08	13.78
Merged-chr5-123508411-3	chr5	123508343	123508543	+	830.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001289822)	TTS (NM_001289822)	-2017.0	NM_198611	231727.0	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	18.17	6.04	13.69	13.27	21.27	10.03	14.28	19.65	9.44	12.05	13.06	9.71
Merged-chr3-133543260-3	chr3	133543163	133543363	+	830.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	1127.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.25	11.07	8.56	16.09	8.59	12.54	8.64	6.39	6.1	5.52	14.57	9.4
Merged-chr10-19669101-2	chr10	19668997	19669197	+	830.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43490.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	6.86	6.04	15.97	6.03	10.23	18.81	13.29	13.09	10.03	11.05	23.62	8.46
Merged-chr16-70329284-2	chr16	70329200	70329400	+	830.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15351.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.62	2.77	1.71	3.62	5.73	8.15	3.32	8.47	15.93	23.1	26.63	13.47
Merged-chr10-127937087-3	chr10	127936960	127937160	+	830.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	38525.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	10.09	4.78	3.42	4.02	2.86	3.76	9.97	3.56	5.11	4.52	6.03	5.01
Merged-chr9-109985609-3	chr9	109985523	109985723	+	830.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205332, intron 2 of 17)	intron (NM_001205332, intron 2 of 17)	53849.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	8.08	12.83	22.82	10.05	7.77	11.29	3.32	12.22	12.78	3.51	18.09	20.99
Merged-chr10-96342683-3	chr10	96342588	96342788	+	830.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116481.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.67	6.29	33.09	12.07	3.68	15.68	6.31	7.21	20.85	35.15	33.67	12.53
Merged-chr12-102692733-3	chr12	102692642	102692842	+	830.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-7722.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	6.46	12.32	15.97	9.65	7.77	17.56	18.27	11.92	12.39	14.06	13.57	13.16
Merged-chr6-122820601-4	chr6	122820496	122820696	+	830.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021899, exon 1 of 11)	5' UTR (NM_021899, exon 1 of 11)	412.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	11.71	10.31	9.7	2.82	4.09	10.03	6.31	6.34	16.33	12.55	6.03	5.64
Merged-chr9-111081033-3	chr9	111080917	111081117	+	830.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23499.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	11.71	1.76	10.27	20.11	17.18	7.84	26.24	30.87	5.11	6.03	27.13	9.71
Merged-chr4-101185468-3	chr4	101185369	101185569	+	830.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	79813.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	13.33	7.04	11.98	13.67	11.45	7.21	10.96	36.76	14.16	9.04	33.16	12.84
Merged-chr2-132107789-3	chr2	132107684	132107884	+	830.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37324.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	8.48	7.8	19.4	9.65	16.77	8.47	12.29	9.93	10.42	11.55	16.58	10.96
Merged-chr15-58818707-2	chr15	58818616	58818816	+	830.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	MLT1H1|LTR|ERVL-MaLR	4711.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.06	4.53	3.99	4.83	14.73	9.09	11.96	18.73	8.46	9.54	16.08	4.39
Merged-chr12-85575636-2	chr12	85575531	85575731	+	830.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23474.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.86	1.26	9.13	5.63	8.18	10.35	11.29	18.48	17.11	8.54	15.58	15.98
Merged-chrX-98890530-2	chrX	98890427	98890627	+	830.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_052976, exon 1 of 25)	5' UTR (NM_052976, exon 1 of 25)	498.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	2.02	3.52	6.85	8.45	12.27	11.29	3.99	9.2	7.87	14.06	22.11	8.46
Merged-chr5-143270032-3	chr5	143269924	143270124	+	830.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017467)	promoter-TSS (NM_017467)	-2.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	10.9	14.09	9.13	10.86	11.45	13.17	8.3	11.55	16.33	18.08	13.06	6.89
Merged-chr5-115530676-3	chr5	115530563	115530763	+	830.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23987.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	10.9	8.05	19.97	10.05	9.41	3.76	9.97	12.14	14.36	11.55	15.58	13.78
Merged-chr11-114987874-1	chr11	114987774	114987974	+	830.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145437, intron 1 of 3)	intron (NM_145437, intron 1 of 3)	2012.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.81	0.0	2.28	0.4	11.86	10.98	7.31	16.21	11.01	9.04	7.03	6.89
Merged-chr7-4836462-2	chr7	4836375	4836575	+	830.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172737, exon 2 of 6)	exon (NM_172737, exon 2 of 6)	8221.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	17.36	3.77	6.28	5.23	11.05	9.09	8.64	8.61	21.83	12.55	14.07	9.08
Merged-chr11-20561437-1	chr11	20561337	20561537	+	830.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	18184.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.85	4.28	4.56	4.42	9.82	8.78	3.65	8.1	5.31	10.04	6.03	3.76
Merged-chr4-102534201-3	chr4	102534089	102534289	+	830.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-35871.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	17.36	12.83	14.26	13.27	0.0	8.15	0.0	7.37	19.08	10.54	16.58	13.47
Merged-chr5-97061681-3	chr5	97061569	97061769	+	830.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49927.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	10.09	6.04	7.42	12.47	22.5	15.68	13.29	15.76	21.24	21.09	13.57	13.16
Merged-chr8-117328914-1	chr8	117328814	117329014	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-20256.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.44	2.26	6.28	6.03	9.41	7.53	5.98	7.6	8.06	4.02	5.53	4.7
Merged-chr3-84921969-2	chr3	84921914	84922114	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-30197.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.23	6.29	5.13	2.82	6.95	4.7	7.31	9.98	5.7	3.51	5.02	6.58
Merged-chr1-33813355-2	chr1	33813261	33813461	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1234.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	8.88	5.28	5.7	4.02	4.91	9.41	5.31	9.79	18.49	6.53	13.06	8.14
Merged-chr12-73765271-1	chr12	73765171	73765371	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-136053.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.81	1.01	0.0	0.0	8.59	15.05	6.31	9.06	5.31	7.03	8.04	6.27
Merged-chr2-91089261-3	chr2	91089154	91089354	+	830.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7424.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	5.25	7.8	24.53	4.83	12.68	9.41	19.27	22.26	19.67	22.09	17.08	11.28
Merged-chr18-35117034-3	chr18	35116966	35117166	+	830.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1846.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	10.9	2.77	15.97	8.45	13.91	11.92	14.95	20.66	15.74	10.04	15.07	10.65
Merged-chr2-94144807-3	chr2	94144651	94144851	+	830.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	13158.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	8.08	5.79	2.28	5.63	13.09	10.03	8.97	14.58	10.62	8.54	11.56	10.65
Merged-chr6-129369920-3	chr6	129369839	129370039	+	830.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15564.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	4.85	14.34	7.99	13.67	20.86	15.37	11.63	17.75	13.96	15.06	15.07	8.46
Merged-chr1-179845052-3	chr1	179844950	179845150	+	830.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41035.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	18.98	13.08	7.99	8.45	13.5	19.13	8.3	10.91	14.55	14.06	19.09	13.78
Merged-chr8-14608070-2	chr8	14607981	14608181	+	830.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280455.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.88	6.29	13.69	17.29	34.36	25.4	50.16	52.63	6.49	2.51	12.06	3.45
Merged-chr2-161108540-3	chr2	161108458	161108658	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126509, intron 1 of 35)	CpG	528.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	14.54	8.3	9.7	6.84	11.86	10.98	7.97	12.48	11.6	4.52	27.13	12.22
Merged-chr15-57693176-3	chr15	57693089	57693289	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1478.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	9.29	6.29	10.27	6.44	12.68	16.62	4.98	11.52	19.67	15.06	21.61	10.02
Merged-chr9-70943609-1	chr9	70943509	70943709	+	830.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324472, intron 1 of 9)	MTE2a|LTR|ERVL-MaLR	8612.0	NM_001324472	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.44	6.04	14.26	8.04	11.86	9.41	10.63	3.79	6.49	11.05	6.53	4.39
Merged-chr19-34193337-3	chr19	34193200	34193400	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360717, exon 1 of 12)	5' UTR (NM_001360717, exon 1 of 12)	366.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.44	16.35	4.56	9.65	6.14	12.54	6.31	8.94	10.42	6.03	14.57	5.33
Merged-chr14-114946541-3	chr14	114946448	114946648	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126548)	promoter-TSS (NR_126548)	-600.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	8.48	11.57	5.7	14.08	15.55	17.25	18.6	27.11	12.19	4.52	10.05	3.76
Merged-chr14-30579937-1	chr14	30579837	30580037	+	830.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	7788.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	3.23	1.01	0.0	0.0	0.82	0.0	0.0	1.07	28.32	14.56	25.63	26.31
Merged-chr17-73302228-3	chr17	73302119	73302319	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97077.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	10.09	11.82	14.26	13.67	7.77	6.9	17.61	14.44	12.0	11.55	18.59	12.53
Merged-chr6-145863230-1	chr6	145863130	145863330	+	830.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024469, exon 5 of 5)	exon (NM_024469, exon 5 of 5)	2190.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.63	9.06	3.42	7.24	8.59	10.35	6.98	17.05	5.11	3.51	3.01	6.27
Merged-chr2-162998686-2	chr2	162998614	162998814	+	830.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291154, intron 9 of 12)	intron (NM_001291154, intron 9 of 12)	7299.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	8.48	4.02	4.56	8.04	6.55	14.11	3.99	10.88	15.14	11.55	13.06	6.27
Merged-chr9-47716338-2	chr9	47716237	47716437	+	830.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	101871.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.44	3.27	7.99	3.22	11.45	4.08	7.64	10.68	10.23	3.51	12.06	8.46
Merged-chr11-69754832-3	chr11	69754761	69754961	+	830.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291068, intron 1 of 28)	MER119|DNA|hAT-Charlie	3772.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	8.08	4.78	30.23	8.04	12.27	15.05	7.97	6.84	16.52	15.06	11.56	10.02
Merged-chr7-24905148-2	chr7	24905057	24905257	+	830.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130152, intron 1 of 28)	intron (NM_001130152, intron 1 of 28)	811.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	12.92	6.29	0.0	3.62	10.64	5.33	11.29	7.21	11.41	12.05	19.09	3.45
Merged-chr3-121370599-3	chr3	121370474	121370674	+	830.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55967.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	7.67	5.28	15.4	8.45	13.5	14.11	10.96	15.67	25.57	19.08	22.11	9.4
Merged-chr6-51509452-3	chr6	51509360	51509560	+	830.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14443.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.25	11.07	10.84	17.29	14.73	12.86	7.31	19.93	24.0	24.1	17.59	13.47
Merged-chr1-144239348-3	chr1	144239252	144239452	+	830.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	9752.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	25.84	21.88	11.98	9.25	19.23	16.62	1.99	6.42	9.64	15.06	9.55	6.58
Merged-chr12-73593552-3	chr12	73593457	73593657	+	830.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	8761.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	10.09	11.82	17.11	20.51	20.46	13.8	16.61	30.0	9.64	4.02	11.05	7.83
Merged-chr11-104549759-3	chr11	104549647	104549847	+	830.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	873.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	8.88	17.36	13.69	6.44	7.77	11.92	11.63	5.13	11.41	6.53	11.56	7.52
Merged-chr17-37197262-2	chr17	37197167	37197367	+	830.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001011518, exon 1 of 1)	exon (NM_001011518, exon 1 of 1)	699.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	10.9	4.28	14.26	18.9	9.41	12.23	11.63	9.95	2.36	2.51	8.54	6.58
Merged-chr4-142095751-3	chr4	142095648	142095848	+	830.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11444.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	11.31	10.56	11.41	11.66	20.46	18.19	23.58	31.51	12.39	5.52	13.57	10.96
Merged-chr11-118242869-2	chr11	118242737	118242937	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	5755.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.86	6.79	4.56	3.22	9.82	3.45	4.65	7.4	12.98	7.53	6.03	10.34
Merged-chr2-45277780-3	chr2	45277679	45277879	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160337.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	11.31	3.52	13.69	8.45	21.68	12.86	10.63	8.69	13.18	13.05	16.08	7.83
Merged-chr4-111886257-1	chr4	111886157	111886357	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16539.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	4.04	3.27	6.85	4.02	9.0	5.02	13.62	9.48	2.56	2.51	3.52	1.57
Merged-chr19-42158013-2	chr19	42157895	42158095	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10606.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	10.09	10.06	7.42	4.83	9.82	8.47	4.32	4.99	3.93	10.54	5.02	5.01
Merged-chr9-22092778-2	chr9	22092669	22092869	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6484.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	2.42	3.02	2.28	6.44	2.45	8.78	8.97	4.96	11.41	3.01	20.1	11.9
Merged-chr14-19722172-1	chr14	19722072	19722272	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29085.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	7.67	1.76	12.55	4.83	11.05	5.02	1.99	10.91	6.49	5.02	12.56	6.89
Merged-chr13-114071635-2	chr13	114071538	114071738	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	79954.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	3.63	2.01	1.14	1.61	4.09	4.39	7.64	10.65	12.39	5.02	10.55	5.64
Merged-chr8-46617957-3	chr8	46617834	46618034	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151680)	promoter-TSS (NR_151680)	643.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	16.15	10.06	9.13	10.46	17.59	10.98	13.95	11.02	12.39	7.53	20.1	10.65
Merged-chr1-154117600-2	chr1	154117502	154117702	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83585.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	9.29	7.8	5.13	4.42	8.59	18.5	11.29	4.57	7.47	9.04	6.03	4.39
Merged-chr6-83636131-2	chr6	83636037	83636237	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	19979.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.06	3.27	9.13	8.45	10.64	2.82	9.97	25.18	9.24	4.52	19.6	7.83
Merged-chr2-122580666-1	chr2	122580566	122580766	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30611.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.44	5.28	7.99	6.03	8.18	3.14	14.28	18.93	4.13	3.01	8.54	3.76
Merged-chr2-27693828-1	chr2	27693728	27693928	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15464.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	8.08	5.53	8.56	6.84	5.73	6.27	6.64	9.34	4.52	1.51	3.52	6.89
Merged-chr7-99124083-2	chr7	99123987	99124187	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	RLTR11A|LTR|ERVK	17057.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	10.5	5.03	2.28	5.23	4.91	7.53	3.99	5.78	12.98	7.03	14.57	3.76
Merged-chr13-112792151-3	chr13	112792051	112792251	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8626.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.86	5.53	12.55	6.03	15.14	21.64	5.31	14.19	48.39	19.08	33.16	13.47
Merged-chr6-134095830-1	chr6	134095730	134095930	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	MLT2D|LTR|ERVL	60130.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	3.52	2.28	3.22	7.36	3.76	7.31	7.49	4.13	3.51	0.0	4.7
Merged-chr7-67371588-2	chr7	67371487	67371687	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	1271.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.02	3.02	1.71	1.21	9.82	15.37	0.66	3.98	8.85	7.03	5.53	8.14
Merged-chrX-85803146-3	chrX	85803019	85803219	+	830.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23542.0	NR_152196	100041562.0	Mm.448008	NR_152196		Gm14762	-	predicted gene 14762	ncRNA	7.67	6.29	18.25	6.44	15.55	12.54	8.64	20.64	11.6	8.54	21.1	6.58
Merged-chr1-88576002-3	chr1	88575895	88576095	+	830.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24478.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	16.96	14.09	23.39	11.66	5.73	5.96	5.65	7.91	17.51	9.54	13.06	5.95
Merged-chr9-108990172-3	chr9	108990111	108990311	+	830.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	10.9	8.55	10.84	2.82	12.68	6.59	2.66	11.44	19.28	19.08	12.06	9.4
Merged-chr6-86785034-3	chr6	86784966	86785166	+	830.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	8518.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	15.34	12.58	24.53	28.56	6.95	21.01	8.3	16.23	7.08	6.53	5.53	7.83
Merged-chr3-146607377-2	chr3	146607271	146607471	+	830.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009474, intron 1 of 7)	intron (NM_009474, intron 1 of 7)	8227.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	9.29	4.28	5.13	4.83	17.18	13.17	12.29	5.92	13.18	15.06	14.07	3.76
Merged-chr2-154256304-2	chr2	154256205	154256405	+	830.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1574.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	1.62	0.0	7.42	2.41	5.32	4.08	10.63	9.11	14.75	6.03	18.09	9.71
Merged-chr5-43737688-1	chr5	43737588	43737788	+	830.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 36 of 37)	intron (NM_001359906, intron 36 of 37)	44461.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.0	0.5	0.0	3.22	11.45	7.21	13.62	17.47	0.0	1.51	0.0	0.63
Merged-chr14-45663746-3	chr14	45663637	45663837	+	830.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5594.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	11.71	7.55	3.42	4.83	9.82	14.74	1.99	5.97	54.09	43.18	33.67	10.34
Merged-chr18-4971038-3	chr18	4970954	4971154	+	830.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75535.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	10.09	12.83	6.28	9.25	4.5	5.64	2.99	8.72	9.24	3.01	14.07	10.96
Merged-chr13-9113946-3	chr13	9113842	9114042	+	830.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	20061.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	8.88	8.05	17.68	8.45	18.82	9.41	15.94	24.81	22.03	20.59	38.69	10.02
Merged-chr11-109344178-2	chr11	109344080	109344280	+	830.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2687.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	6.46	6.29	1.14	3.62	14.73	11.29	8.64	7.99	9.24	18.58	10.55	13.47
Merged-chr2-68796690-2	chr2	68796592	68796792	+	830.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64749.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.04	2.52	9.13	6.44	13.5	8.47	6.31	9.25	12.59	6.03	8.04	6.27
Merged-chr1-149946676-2	chr1	149946584	149946784	+	830.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14606.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.65	5.03	11.41	6.84	10.23	13.17	9.63	12.03	16.52	12.05	11.56	8.14
Merged-chr10-37222035-2	chr10	37221934	37222134	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83108.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.44	7.55	1.14	4.83	12.68	14.74	7.31	7.18	16.33	15.57	17.59	1.25
Merged-chr7-43895010-3	chr7	43894903	43895103	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	13831.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	14.13	9.31	4.56	17.7	6.95	6.59	10.96	9.5	12.78	9.04	20.1	4.7
Merged-chr11-84442767-1	chr11	84442667	84442867	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019816, intron 11 of 12)	intron (NM_019816, intron 11 of 12)	70734.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.81	1.01	2.28	2.41	13.91	8.78	9.63	15.31	5.9	9.04	8.54	2.82
Merged-chr5-66128983-1	chr5	66128883	66129083	+	830.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	Lx9|LINE|L1	21995.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.62	1.01	0.57	0.0	0.82	5.02	1.0	0.81	9.44	10.54	9.55	11.28
Merged-chr14-51095847-3	chr14	51095753	51095953	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007447)	promoter-TSS (NM_007447)	-147.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	10.09	16.1	5.7	9.65	27.0	22.89	14.95	29.38	9.44	8.54	13.57	13.16
Merged-chr17-10743702-1	chr17	10743602	10743802	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96489.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	1.21	0.0	0.0	2.41	3.68	2.82	8.3	4.71	4.33	1.51	9.04	2.19
Merged-chr4-135313014-1	chr4	135312914	135313114	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	40200.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	16.56	17.61	10.27	7.24	6.14	5.02	4.32	1.51	6.69	2.51	4.02	2.82
Merged-chr18-36482672-3	chr18	36482562	36482762	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28167.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	15.75	15.09	17.11	4.42	6.95	36.06	13.62	7.54	13.18	9.04	11.56	2.51
Merged-chr2-128748712-1	chr2	128748612	128748812	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	Charlie1|DNA|hAT-Charlie	49797.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.81	2.01	0.0	1.61	13.09	7.53	0.66	7.01	4.33	9.04	2.01	3.76
Merged-chr5-113648065-1	chr5	113647965	113648165	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	B4|SINE|B4	2325.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.67	4.02	2.28	1.61	5.73	9.09	4.32	5.38	5.31	8.54	7.03	7.52
Merged-chrX-134612686-3	chrX	134612597	134612797	+	830.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11518.0	NM_001313717	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	12.92	5.79	6.85	7.64	13.5	16.93	11.29	11.44	12.0	17.07	11.56	5.64
Merged-chr8-81014099-4	chr8	81014018	81014218	+	830.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027554, exon 1 of 10)	exon (NM_027554, exon 1 of 10)	788.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	8.48	11.57	8.56	9.65	9.41	7.21	7.31	2.78	9.64	11.05	7.54	15.66
Merged-chr13-97208292-3	chr13	97208189	97208389	+	830.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9932.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	7.27	13.33	14.83	14.88	15.96	8.15	6.98	9.95	19.87	12.05	8.04	7.52
Merged-chr15-58418266-3	chr15	58418148	58418348	+	830.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	2780.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	9.29	20.12	16.54	7.24	13.5	11.29	8.97	17.38	11.01	9.54	12.06	8.46
Merged-chr2-23006425-3	chr2	23006303	23006503	+	830.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	Lx8|LINE|L1	33838.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.04	6.04	9.13	3.22	9.82	11.92	13.62	16.54	18.49	18.08	21.61	14.1
Merged-chr7-118488388-3	chr7	118488292	118488492	+	830.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	3583.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.25	8.05	7.42	7.24	11.45	13.17	7.64	12.48	22.82	13.56	32.16	21.3
Merged-chr1-164652442-2	chr1	164652339	164652539	+	830.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-144224.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	3.23	3.77	7.99	12.87	6.14	1.88	10.96	9.03	17.51	12.05	34.17	9.08
Merged-chr5-43185011-3	chr5	43184929	43185129	+	830.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	ORR1E|LTR|ERVL-MaLR	-48434.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.04	9.06	9.13	2.41	7.77	11.92	8.97	18.08	15.34	9.04	23.62	10.65
Merged-chr12-3906597-2	chr12	3906497	3906697	+	830.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14853.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.86	9.31	4.56	12.47	1.64	5.02	8.3	12.98	7.67	4.02	8.54	6.89
Merged-chr18-68929608-2	chr18	68929508	68929708	+	830.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	21920.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	6.86	10.06	5.7	17.7	2.45	5.96	16.61	13.74	1.57	4.52	1.0	1.25
Merged-chr4-121009987-2	chr4	121009892	121010092	+	830.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	L2a|LINE|L2	7255.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	10.9	2.26	4.56	6.03	11.86	10.66	8.97	11.97	12.19	6.03	11.56	15.66
Merged-chr17-47515705-3	chr17	47515600	47515800	+	830.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	10649.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	12.11	9.81	7.99	1.61	13.5	15.99	9.97	5.86	10.03	12.55	13.06	6.89
Merged-chrX-107151297-3	chrX	107151207	107151407	+	830.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175442, intron 1 of 1)	intron (NM_175442, intron 1 of 1)	1692.0	NM_175442	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	8.48	8.55	7.99	8.45	8.59	11.6	11.63	14.44	11.41	13.56	11.56	6.58
Merged-chr7-24715238-3	chr7	24715153	24715353	+	830.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_199150)	TTS (NM_199150)	5994.0	NM_199150	232972.0	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	14.54	6.54	38.79	11.26	17.18	11.29	18.93	20.47	10.03	14.56	20.1	8.77
Merged-chr13-39003592-3	chr13	39003487	39003687	+	830.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42712.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	11.31	9.56	20.54	17.29	19.64	16.31	4.65	18.08	22.42	11.05	24.12	7.83
Merged-chr6-82769923-3	chr6	82769839	82770039	+	830.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	4515.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.65	16.35	11.41	5.63	10.64	14.74	3.99	7.99	30.88	14.56	18.59	12.22
Merged-chr16-91021257-3	chr16	91021174	91021374	+	830.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-9966.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	8.48	5.79	10.27	11.26	19.23	17.25	13.95	26.3	16.72	13.05	25.12	8.14
Merged-chr2-128715269-3	chr2	128715181	128715381	+	830.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	ID_B1|SINE|B4	16366.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	9.29	7.55	11.41	14.88	5.73	5.33	20.26	27.39	11.01	3.01	16.58	7.83
Merged-chr19-53802079-2	chr19	53801968	53802168	+	830.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-90163.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	5.65	2.52	10.84	4.42	7.36	4.7	3.65	5.33	13.37	3.51	10.05	9.4
Merged-chr5-36742586-2	chr5	36742478	36742678	+	830.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6101.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	5.25	11.57	3.99	4.02	10.23	10.35	3.99	11.75	10.23	0.5	5.02	6.58
Merged-chr4-130799126-5	chr4	130799041	130799241	+	830.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	6604.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	9.69	5.53	5.13	2.01	5.32	8.47	7.64	10.99	5.7	13.56	11.56	8.14
Merged-chr6-145277048-3	chr6	145276952	145277152	+	830.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26500.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	11.31	4.28	7.99	10.05	17.18	11.92	12.95	14.47	15.74	12.05	18.59	14.1
Merged-chr7-75551152-3	chr7	75551074	75551274	+	830.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 2 of 36)	intron (NM_029332, intron 2 of 36)	95640.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	14.54	9.06	10.27	14.08	10.23	22.58	9.3	10.37	24.59	15.57	19.6	19.42
Merged-chr1-134076661-6	chr1	134076548	134076748	+	830.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2507.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	7.27	6.29	3.99	8.45	2.86	3.76	3.99	6.67	8.06	3.51	11.56	9.4
Merged-chr17-48167278-3	chr17	48167177	48167377	+	830.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113556)	promoter-TSS (NM_001113556)	-20.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	11.31	6.04	11.98	17.7	12.27	10.03	12.62	11.21	14.36	11.55	18.59	9.71
Merged-chr8-76988121-2	chr8	76988027	76988227	+	830.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083906, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	85619.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	5.03	3.99	9.25	4.5	6.9	10.3	25.68	24.19	12.55	26.13	17.54
Merged-chr15-79342947-3	chr15	79342872	79343072	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3649.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	12.11	8.8	13.12	8.45	5.73	12.86	7.31	4.63	18.69	14.06	26.63	14.41
Merged-chr15-96588828-3	chr15	96588733	96588933	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 8 of 15)	intron (NM_001166456, intron 8 of 15)	53129.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	9.69	7.8	17.11	4.83	13.5	14.74	20.26	31.93	15.74	9.54	28.64	13.16
Merged-chr10-117682698-3	chr10	117682594	117682794	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027468, intron 8 of 8)	B3|SINE|B2	28064.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	13.33	8.55	10.84	2.41	16.36	15.05	7.64	8.5	23.6	23.1	18.09	8.77
Merged-chr11-78189578-3	chr11	78189488	78189688	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033475, exon 2 of 10)	exon (NM_033475, exon 2 of 10)	840.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	12.11	10.31	7.42	9.65	18.41	14.42	5.98	12.0	22.62	11.05	12.56	10.34
Merged-chr11-116534435-3	chr11	116534363	116534563	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	-277.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	14.13	8.8	1.71	2.82	13.09	18.5	2.66	3.67	16.72	11.05	11.56	6.58
Merged-chr6-5165087-3	chr6	5165001	5165201	+	830.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	28845.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	9.29	6.79	14.26	13.27	16.77	12.86	8.64	10.04	12.19	9.04	7.54	5.95
Merged-chr5-134350887-3	chr5	134350780	134350980	+	830.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24426.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	9.29	13.58	13.69	7.24	20.86	25.71	7.64	8.72	16.52	20.08	19.09	10.96
Merged-chr19-37375082-1	chr19	37374982	37375182	+	830.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1321.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	4.04	5.28	6.28	3.22	1.64	8.78	0.66	2.64	13.57	2.51	13.06	3.76
Merged-chr6-5233884-1	chr6	5233784	5233984	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173006, intron 5 of 8)	intron (NM_173006, intron 5 of 8)	22349.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.0	4.28	0.57	2.01	10.23	12.23	11.96	6.22	3.93	3.51	9.04	5.01
Merged-chr18-13008174-1	chr18	13008074	13008274	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1184.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	2.42	4.28	0.57	6.84	3.27	9.72	4.65	9.39	3.34	3.51	9.55	6.27
Merged-chr10-84829230-1	chr10	84829130	84829330	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024918, intron 4 of 17)	ORR1E|LTR|ERVL-MaLR	-8918.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	3.23	2.52	6.28	10.86	8.59	4.7	11.96	10.37	4.13	1.51	4.52	1.25
Merged-chr2-129588167-2	chr2	129588064	129588264	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4675.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.25	6.04	5.7	0.8	12.68	19.76	1.99	3.84	10.82	15.57	5.53	1.25
Merged-chr10-80389386-2	chr10	80389287	80389487	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1736.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	11.71	3.77	8.56	5.23	11.45	9.72	2.66	9.36	11.41	9.54	9.04	10.02
Merged-chr12-110852181-1	chr12	110852081	110852281	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1902.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	4.85	4.53	12.55	0.8	6.55	1.88	5.31	5.94	2.95	4.02	7.03	2.82
Merged-chr6-145122943-2	chr6	145122843	145123043	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	1204.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	9.69	5.28	13.69	10.46	2.86	3.76	6.98	14.8	6.1	5.02	9.04	5.64
Merged-chr19-23038559-1	chr19	23038459	23038659	+	830.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102667.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	1.14	2.41	0.0	0.0	0.0	0.34	8.06	10.04	8.54	9.4
Merged-chr8-106936936-1	chr8	106936836	106937036	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	1186.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	2.42	2.26	4.56	5.63	4.91	6.9	4.65	8.86	8.65	2.51	3.01	4.39
Merged-chr4-123633960-2	chr4	123633866	123634066	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	17546.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	13.73	3.52	6.28	11.26	3.27	7.84	3.99	8.92	4.72	7.53	2.01	6.27
Merged-chr15-50803639-1	chr15	50803539	50803739	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	85410.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.44	4.02	15.4	5.23	11.86	9.41	8.64	9.73	6.88	6.03	16.08	4.07
Merged-chr13-45455801-2	chr13	45455736	45455936	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51608.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	14.13	7.8	5.7	18.1	17.18	12.54	21.26	23.13	6.1	6.53	16.08	3.13
Merged-chr7-45102866-1	chr7	45102766	45102966	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357117, intron 2 of 6)	intron (NM_001357117, intron 2 of 6)	956.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	6.86	1.51	0.57	2.82	1.23	2.82	7.64	4.07	1.38	3.01	2.01	3.45
Merged-chr12-71017007-1	chr12	71016907	71017107	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081195, intron 1 of 23)	intron (NM_001081195, intron 1 of 23)	1040.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	6.86	3.27	8.56	6.44	8.59	6.9	3.65	8.33	7.87	9.04	10.05	6.89
Merged-chr5-34105843-1	chr5	34105743	34105943	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181857, intron 13 of 24)	RMER19B|LTR|ERVK	-12897.0	NR_040703	75357.0	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	4.85	1.01	0.0	0.8	3.27	3.45	5.98	7.01	2.36	0.0	2.01	3.76
Merged-chr4-63590649-2	chr4	63590536	63590736	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	10128.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	14.94	4.53	4.56	6.03	8.18	15.68	3.99	6.17	12.0	18.08	5.53	2.19
Merged-chr3-144562212-1	chr3	144562112	144562312	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	L1MA8|LINE|L1	8004.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	5.65	3.77	5.7	4.83	2.05	2.2	5.98	6.87	4.52	6.03	7.03	6.27
Merged-chr15-98477907-1	chr15	98477807	98478007	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4776.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	4.04	2.52	5.13	15.28	7.36	2.51	6.98	11.78	8.26	5.52	6.53	9.08
Merged-chr19-34611591-1	chr19	34611491	34611691	+	830.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001005858, exon 2 of 2)	exon (NM_001005858, exon 2 of 2)	3634.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	3.23	5.03	0.0	0.8	8.18	7.21	1.0	0.64	10.03	13.05	3.01	4.7
Merged-chr7-127273228-1	chr7	127273128	127273328	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009266, exon 1 of 1)	exon (NM_009266, exon 1 of 1)	831.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	4.85	10.56	2.28	1.21	4.09	8.78	1.0	3.22	7.67	9.54	5.02	4.07
Merged-chr9-58270282-1	chr9	58270182	58270382	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	17118.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	5.25	1.76	2.28	3.22	8.18	2.51	0.33	10.23	2.56	9.04	8.04	8.77
Merged-chr15-76908296-1	chr15	76908196	76908396	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	4225.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	9.69	7.04	2.28	2.41	6.14	6.59	3.65	4.01	4.72	5.02	1.0	4.7
Merged-chr16-55469291-1	chr16	55469191	55469391	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25440.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	3.23	2.01	9.7	8.85	1.64	6.9	4.65	7.26	6.88	7.53	6.03	3.76
Merged-chr1-88642976-3	chr1	88642881	88643081	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59210.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	16.56	8.55	10.84	6.03	13.09	17.87	16.61	14.16	18.1	19.58	13.57	5.64
Merged-chr18-52244175-1	chr18	52244075	52244275	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87361.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	1.62	0.0	0.0	4.83	2.45	4.39	7.31	8.3	2.16	0.0	4.52	0.94
Merged-chr15-59056635-2	chr15	59056528	59056728	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 2 of 14)	intron (NM_144800, intron 2 of 14)	25398.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.86	5.03	5.13	3.62	15.55	5.64	14.62	18.79	15.93	11.05	17.59	6.27
Merged-chr2-6711260-3	chr2	6711164	6711364	+	829.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	L2|LINE|L2	10398.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	11.71	9.56	17.11	8.85	11.45	15.37	6.31	14.07	33.24	11.55	17.59	10.34
Merged-chr16-24487825-3	chr16	24487740	24487940	+	829.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	39749.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.27	10.56	11.41	3.62	8.18	15.37	7.64	16.07	9.44	18.58	14.57	8.14
Merged-chr1-144000477-5	chr1	144000359	144000559	+	829.960022	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	3690.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	12.11	15.09	12.55	17.29	8.18	12.54	8.64	10.12	12.78	15.06	14.07	12.22
Merged-chr10-8888383-3	chr10	8888280	8888480	+	829.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2310.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	13.33	7.55	14.83	5.63	9.82	21.32	10.96	11.92	17.9	19.08	15.07	9.71
Merged-chrX-85304936-2	chrX	85304845	85305045	+	829.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	55268.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	5.65	7.8	13.12	8.45	8.59	6.59	18.27	11.24	1.97	3.51	1.51	1.25
Merged-chr11-73084505-2	chr11	73084419	73084619	+	829.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025818)	TTS (NM_025818)	-6064.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	16.15	5.28	9.13	12.47	13.91	10.66	7.31	11.72	6.69	2.51	0.5	3.45
Merged-chr15-98728097-2	chr15	98727980	98728180	+	829.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357893)	promoter-TSS (NM_001357893)	118.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	6.46	5.53	11.41	14.08	9.0	9.72	10.96	8.41	7.87	3.51	11.05	4.39
Merged-chr11-117320604-3	chr11	117320493	117320693	+	829.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11122.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	12.11	9.56	10.27	14.88	12.27	12.23	8.97	14.05	10.62	4.52	10.55	13.78
Merged-chr17-43075983-2	chr17	43075849	43076049	+	829.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	59394.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	10.9	6.29	10.84	7.24	12.68	9.41	7.31	16.85	7.87	6.53	6.53	3.45
Merged-chr12-87441451-3	chr12	87441367	87441567	+	829.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102565, intron 1 of 5)	intron (NM_001102565, intron 1 of 5)	2372.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	11.71	21.38	20.54	6.03	9.41	16.62	4.32	6.0	31.27	17.57	22.11	10.34
Merged-chr18-39553239-6	chr18	39553138	39553338	+	829.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65993.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	9.69	3.27	13.12	10.05	7.77	8.78	7.97	10.43	10.42	6.53	6.53	5.33
Merged-chr16-23231999-2	chr16	23231898	23232098	+	829.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	5977.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	10.09	5.53	6.28	19.31	4.09	9.09	13.95	17.86	3.15	2.01	8.04	8.77
Merged-chr14-73374487-3	chr14	73374384	73374584	+	829.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	10805.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	8.88	7.29	15.4	4.42	8.18	9.72	8.3	17.16	15.93	19.08	14.07	4.39
Merged-chr4-3659448-3	chr4	3659348	3659548	+	829.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	2942.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.27	8.8	15.97	14.08	14.73	10.03	16.94	13.65	18.49	3.51	14.07	10.02
Merged-chr11-90242586-1	chr11	90242486	90242686	+	829.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6890.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.06	6.04	10.27	8.04	12.27	8.78	10.3	12.53	4.72	9.04	4.02	7.21
Merged-chr17-46830160-3	chr17	46830033	46830233	+	829.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100452, intron 1 of 10)	intron (NM_001100452, intron 1 of 10)	1280.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	20.59	8.55	21.11	13.67	11.45	15.68	7.64	15.81	15.54	12.05	6.03	10.02
Merged-chr5-121833878-5	chr5	121833819	121834019	+	829.82666	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	2185.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	6.46	9.06	8.56	4.83	11.05	16.93	5.31	9.39	17.7	13.05	13.06	13.78
Merged-chr4-123283149-1	chr4	123283049	123283249	+	829.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356377, exon 1 of 14)	5' UTR (NM_001356377, exon 1 of 14)	238.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	6.06	5.79	1.71	4.83	4.09	6.27	3.65	3.39	15.93	15.06	15.58	7.52
Merged-chr16-22353854-3	chr16	22353766	22353966	+	829.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58878.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	5.65	3.27	12.55	23.73	15.14	26.65	27.24	37.46	14.55	11.05	28.64	18.48
Merged-chr14-105142205-2	chr14	105142114	105142314	+	829.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134077, intron 11 of 20)	MTC|LTR|ERVL-MaLR	-27538.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.81	0.5	3.42	4.02	5.32	8.15	4.98	5.72	29.5	19.58	39.7	20.68
Merged-chr4-6374007-2	chr4	6373863	6374063	+	829.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	8283.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	1.21	5.79	3.42	3.22	9.0	4.08	4.65	4.15	3.54	2.51	7.03	8.77
Merged-chr4-109546704-2	chr4	109546605	109546805	+	829.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15408.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	15.34	14.84	10.27	13.27	7.77	14.11	6.98	18.93	6.88	9.04	8.54	13.78
Merged-chr4-105748429-3	chr4	105748299	105748499	+	829.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-492814.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	9.69	9.06	17.11	6.84	6.95	16.62	13.62	14.86	11.8	7.53	19.6	5.95
Merged-chr11-95838825-3	chr11	95838730	95838930	+	829.722229	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-3465.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.27	2.77	7.99	6.44	11.45	17.25	6.98	9.98	14.55	8.03	10.55	5.01
Merged-chr17-83850913-5	chr17	83850762	83850962	+	829.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155490)	TTS (NR_155490)	3556.0	NR_155490	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	3.63	7.8	1.71	3.62	6.55	6.59	5.98	2.07	11.21	5.02	14.57	10.96
Merged-chr2-28593043-3	chr2	28592952	28593152	+	829.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9773.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	10.9	15.59	12.55	4.42	9.0	21.95	14.95	9.08	14.16	8.54	27.64	8.46
Merged-chr19-17247557-3	chr19	17247448	17247648	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91957.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	12.92	13.08	8.56	16.49	18.41	13.48	7.97	11.05	12.19	7.03	12.06	14.1
Merged-chr13-37803408-3	chr13	37803325	37803525	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-22613.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	12.92	5.28	7.42	10.05	12.27	16.93	5.31	10.88	13.18	5.02	14.07	9.08
Merged-chr3-107097547-3	chr3	107097471	107097671	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3996.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	7.27	6.04	6.28	8.85	21.27	11.92	7.31	23.02	18.1	13.05	16.58	10.02
Merged-chr14-25832454-3	chr14	25832366	25832566	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9689.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	13.33	4.02	12.55	9.65	10.23	14.11	19.6	14.52	9.44	8.03	13.06	8.46
Merged-chr11-50047865-1	chr11	50047765	50047965	+	829.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-21837.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	4.85	4.78	9.7	2.41	10.64	4.08	7.31	13.54	8.26	1.0	29.65	5.01
Merged-chr7-75641952-3	chr7	75641854	75642054	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186420.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	14.54	10.82	9.13	10.46	20.46	15.99	12.95	25.57	11.01	9.04	10.05	6.27
Merged-chr2-60805519-1	chr2	60805419	60805619	+	829.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	75919.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.83	1.51	4.56	2.41	9.82	7.21	5.65	8.44	6.69	8.54	4.02	4.39
Merged-chr7-66119054-3	chr7	66118951	66119151	+	829.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9536.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	10.9	9.31	9.13	3.22	11.86	20.7	6.64	9.9	25.37	14.06	13.57	7.52
Merged-chr1-190929193-1	chr1	190929093	190929293	+	829.599976	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357133, intron 1 of 8)	B1F|SINE|Alu	371.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	10.09	10.56	8.56	12.07	6.95	8.78	16.94	9.2	10.62	8.03	9.04	13.78
Merged-chr1-51498148-2	chr1	51498051	51498251	+	829.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19752.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.65	4.53	11.41	8.85	9.0	19.13	10.3	9.36	12.59	15.06	14.57	8.14
Merged-chr5-150611798-2	chr5	150611686	150611886	+	829.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362416, intron 6 of 7)	L3|LINE|CR1	-17261.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.04	2.52	9.13	3.62	14.73	7.21	3.99	7.99	4.13	10.04	11.05	7.52
Merged-chr12-35554429-2	chr12	35554321	35554521	+	829.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19432.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.46	6.54	1.71	10.46	15.55	11.29	13.29	7.96	7.67	5.02	8.54	2.82
Merged-chr9-14769175-3	chr9	14769113	14769313	+	829.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029306, intron 1 of 3)	intron (NM_029306, intron 1 of 3)	1817.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	7.27	7.8	16.54	12.07	15.96	10.35	9.63	14.38	7.08	10.04	9.55	5.95
Merged-chr1-186708927-3	chr1	186708821	186709021	+	829.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2932.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	15.34	13.83	12.55	23.33	26.18	11.92	9.97	25.35	7.47	6.53	9.04	11.28
Merged-chr4-58566906-3	chr4	58566794	58566994	+	829.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13403.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.85	11.82	8.56	22.12	13.09	2.82	4.32	9.45	14.75	8.54	13.06	7.83
Merged-chr2-93345991-4	chr2	93345855	93346055	+	829.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11468.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	11.71	3.77	13.69	7.64	10.64	13.48	17.61	20.38	6.88	9.54	8.54	4.7
Merged-chr18-73703199-3	chr18	73703052	73703252	+	829.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155448)	promoter-TSS (NR_155448)	589.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	7.67	4.78	11.41	3.22	14.73	9.72	23.25	15.45	12.59	9.54	10.05	7.52
Merged-chr14-67899019-3	chr14	67898918	67899118	+	829.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	34554.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	7.27	14.34	9.13	9.25	12.27	5.02	8.3	13.15	14.16	8.03	12.06	13.16
Merged-chr5-8659894-1	chr5	8659794	8659994	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011076, intron 2 of 29)	intron (NM_011076, intron 2 of 29)	-36942.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	3.23	1.51	1.14	4.42	1.64	7.84	9.3	10.71	5.11	4.02	10.55	5.64
Merged-chr1-13291796-2	chr1	13291697	13291897	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	80632.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	6.06	3.77	13.12	10.46	5.73	9.72	1.99	15.2	4.13	2.51	14.57	7.52
Merged-chr2-146100002-2	chr2	146099907	146100107	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121990.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	3.23	9.81	5.7	9.65	23.73	15.05	38.86	20.22	5.51	9.04	5.53	3.76
Merged-chr18-34930987-2	chr18	34930904	34931104	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	999.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	4.44	2.77	8.56	8.04	11.45	4.7	11.29	10.12	12.59	7.03	7.03	12.84
Merged-chr15-76780965-3	chr15	76780854	76781054	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	37216.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	10.9	14.34	15.4	20.91	20.86	16.93	19.27	40.37	3.93	5.52	11.56	11.9
Merged-chr6-89422787-3	chr6	89422694	89422894	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60181.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.85	8.05	22.82	14.48	11.86	12.54	10.3	8.19	19.08	12.55	21.1	10.34
Merged-chr10-54032499-1	chr10	54032399	54032599	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	43297.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.23	3.27	7.99	2.82	8.59	5.64	6.64	12.81	3.15	3.01	4.52	3.13
Merged-chr6-32249289-1	chr6	32249189	32249389	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 5 of 31)	intron (NM_175750, intron 5 of 31)	199001.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	1.62	2.52	7.99	12.47	4.5	6.59	7.31	6.95	3.93	8.54	5.02	3.13
Merged-chr18-53265706-2	chr18	53265675	53265875	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	B1_Mur2|SINE|Alu	20113.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.65	3.52	4.56	3.22	3.68	4.08	6.31	3.62	4.92	7.03	7.54	7.83
Merged-chr9-79816661-1	chr9	79816561	79816761	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14321.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	6.06	7.29	6.28	7.24	7.77	10.98	8.3	14.64	4.72	7.53	16.08	3.45
Merged-chrX-96147927-3	chrX	96147828	96148028	+	829.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 2 of 12)	intron (NM_010833, intron 2 of 12)	51883.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	14.13	21.38	7.99	23.33	5.32	6.27	6.64	19.18	15.34	9.54	13.06	5.01
Merged-chr1-106758975-2	chr1	106758869	106759069	+	829.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	773.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	9.69	6.29	11.41	11.66	12.68	8.47	15.28	11.61	4.33	5.02	7.54	13.47
Merged-chr5-139387983-3	chr5	139387874	139388074	+	829.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1930.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.67	6.29	18.83	11.26	19.23	12.86	10.63	22.74	17.51	7.53	9.04	12.22
Merged-chr10-22747153-3	chr10	22747052	22747252	+	829.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15705.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	20.19	9.56	20.54	20.51	14.73	24.77	17.94	33.64	7.28	9.04	15.07	12.53
Merged-chr17-15812591-3	chr17	15812483	15812683	+	829.3388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	14003.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	9.29	13.83	16.54	18.9	15.14	7.53	16.28	25.68	20.26	14.56	12.06	6.58
Merged-chr13-9354028-2	chr13	9353916	9354116	+	829.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	77491.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.23	4.02	10.27	6.44	11.05	13.48	4.65	13.57	5.9	19.58	6.03	9.71
Merged-chr1-156620233-2	chr1	156620154	156620354	+	829.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	54085.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.81	0.75	1.14	0.8	12.68	9.41	11.96	10.51	11.41	7.53	8.04	6.58
Merged-chr18-67435601-3	chr18	67435505	67435705	+	829.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027130, intron 5 of 16)	L1MEf|LINE|L1	13531.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	16.96	3.52	14.83	18.1	15.96	8.15	17.27	18.84	9.24	8.03	12.56	12.22
Merged-chr5-79794969-1	chr5	79794869	79795069	+	829.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1225602.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	3.27	0.0	1.61	9.41	3.76	9.97	9.9	0.79	3.01	2.51	0.63
Merged-chr5-143499882-1	chr5	143499782	143499982	+	829.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144915, intron 11 of 14)	intron (NM_144915, intron 11 of 14)	28111.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	4.85	8.55	2.85	6.03	9.82	13.8	2.66	7.07	3.93	7.53	6.53	6.27
Merged-chr6-49039716-2	chr6	49039619	49039819	+	829.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053110, intron 1 of 10)	B3A|SINE|B2	3201.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	7.27	9.56	5.7	4.83	13.91	14.74	12.29	12.5	13.57	9.04	11.56	9.71
Merged-chr7-100226034-3	chr7	100225963	100226163	+	829.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1544.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	17.77	21.88	9.13	4.02	15.55	21.32	7.97	6.17	9.44	12.55	16.08	7.21
Merged-chr5-39838074-3	chr5	39837972	39838172	+	829.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-193441.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	4.04	6.29	9.13	13.27	19.23	20.38	10.96	35.72	26.55	14.06	31.15	20.36
Merged-chr4-119968302-2	chr4	119968199	119968399	+	829.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	153621.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.04	5.53	6.28	3.22	12.27	12.86	12.62	8.13	10.42	13.05	14.07	6.89
Merged-chr16-90712474-3	chr16	90712341	90712541	+	829.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14930.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	11.31	8.8	7.42	8.04	9.41	9.41	7.31	18.67	10.42	8.03	12.06	9.4
Merged-chr6-28621698-3	chr6	28621609	28621809	+	829.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	141361.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	11.31	3.02	11.98	11.26	4.91	5.64	5.31	11.66	5.31	9.04	18.59	16.92
Merged-chr19-59073239-3	chr19	59073137	59073337	+	829.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	2832.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	9.69	6.54	15.4	12.47	14.32	13.48	10.3	13.12	21.24	14.56	18.09	7.83
Merged-chr2-119163334-3	chr2	119163221	119163421	+	829.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4467.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	16.96	11.57	14.26	22.93	33.96	11.6	16.61	20.1	8.85	7.53	6.03	10.02
Merged-chr2-5474517-1	chr2	5474417	5474617	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	ORR1C2|LTR|ERVL-MaLR	95127.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.81	3.02	9.13	2.82	13.09	4.39	3.65	11.13	5.31	7.03	6.53	5.64
Merged-chr13-78199200-1	chr13	78199100	78199300	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010151)	promoter-TSS (NM_010151)	-327.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	1.62	4.78	2.28	5.63	11.05	6.59	4.65	8.75	4.33	5.02	10.05	2.82
Merged-chr4-102567722-1	chr4	102567622	102567822	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-2338.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.06	2.26	3.99	5.63	7.36	7.21	3.99	6.81	3.93	6.03	7.54	9.71
Merged-chr10-88623731-1	chr10	88623631	88623831	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18579.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	1.62	6.79	13.69	11.26	6.55	10.66	13.95	17.92	10.03	7.03	8.04	6.58
Merged-chr4-140906263-2	chr4	140906156	140906356	+	829.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-104.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	19.38	6.04	5.13	6.84	10.64	16.31	12.62	7.01	19.08	14.06	14.07	10.02
Merged-chr17-34349604-3	chr17	34349503	34349703	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4958.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	15.75	15.59	14.83	6.44	11.05	17.25	5.31	6.64	10.23	30.13	19.09	9.71
Merged-chr5-90603550-3	chr5	90603444	90603644	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028478, exon 11 of 11)	3' UTR (NM_028478, exon 11 of 11)	36983.0	NM_028478	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	14.54	6.04	13.69	11.26	4.91	15.37	7.31	17.86	10.62	13.05	9.55	8.14
Merged-chr4-15257004-3	chr4	15256902	15257102	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8818.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	11.71	12.83	15.4	11.26	42.14	37.0	35.21	59.24	8.85	7.03	12.06	16.6
Merged-chr6-108549745-3	chr6	108549659	108549859	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010585, exon 62 of 62)	exon (NM_010585, exon 62 of 62)	60016.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	10.5	6.79	17.68	2.41	5.73	7.21	6.64	14.19	24.98	18.58	27.64	11.28
Merged-chr11-98359513-1	chr11	98359413	98359613	+	829.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	1145.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	2.83	2.77	3.99	4.42	7.36	7.84	8.97	10.85	7.87	6.03	2.51	6.89
Merged-chr6-97489043-3	chr6	97488947	97489147	+	829.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-1227.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.88	7.55	7.99	8.04	6.95	13.17	5.65	12.28	17.11	26.61	33.67	17.54
Merged-chr15-67782165-3	chr15	67782156	67782356	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	476600.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.25	6.29	1.71	4.42	7.77	13.8	6.98	2.61	9.24	9.54	8.54	7.52
Merged-chr2-141033653-3	chr2	141033559	141033759	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 5 of 18)	MLT1C|LTR|ERVL-MaLR	-362183.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	10.09	27.67	17.68	4.42	4.91	21.64	8.3	4.04	26.75	16.07	13.06	7.52
Merged-chr9-55255217-3	chr9	55255131	55255331	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	28394.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.86	5.79	11.41	11.66	22.91	38.57	21.59	25.51	17.9	22.09	18.09	10.65
Merged-chr12-55560330-3	chr12	55560293	55560493	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4812.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	6.86	5.03	3.42	10.86	5.73	13.17	9.63	7.26	7.87	11.05	4.52	9.4
Merged-chr2-153164608-2	chr2	153164535	153164735	+	829.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	3334.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	8.08	3.77	1.14	4.02	16.36	13.17	6.64	7.09	4.92	8.03	10.55	10.34
Merged-chr14-63117194-2	chr14	63117102	63117302	+	829.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5260.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.88	5.53	4.56	6.03	6.14	13.48	5.98	10.51	10.23	10.54	11.05	5.33
Merged-chr13-98812451-3	chr13	98812359	98812559	+	829.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	2990.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	8.48	12.58	10.84	15.28	9.0	9.72	6.31	16.04	13.96	24.6	23.11	14.72
Merged-chr9-102835279-3	chr9	102835191	102835391	+	829.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	CpG	371.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	4.85	6.29	14.26	6.03	9.0	9.41	13.62	12.62	13.37	8.03	19.09	13.78
Merged-chr16-76763950-2	chr16	76763850	76764050	+	829.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	15142.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	2.02	9.81	3.42	5.63	12.27	12.23	6.64	13.85	9.64	5.52	17.08	8.46
Merged-chr6-21998314-3	chr6	21998197	21998397	+	829.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	12387.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	10.09	13.08	18.25	9.65	5.32	20.07	6.64	10.26	24.59	15.06	18.09	14.1
Merged-chr15-35460446-2	chr15	35460346	35460546	+	829.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 16 of 61)	intron (NM_177151, intron 16 of 61)	88900.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	8.48	4.53	0.0	5.23	8.59	8.47	8.64	17.92	13.57	8.03	18.09	10.02
Merged-chr18-80468581-3	chr18	80468450	80468650	+	829.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1117.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	9.69	14.59	8.56	7.64	9.0	10.35	10.63	12.67	12.19	10.04	13.06	13.78
Merged-chr11-53850107-3	chr11	53850013	53850213	+	829.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	9143.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	15.34	9.81	15.4	17.7	11.45	15.68	4.98	10.71	12.0	11.55	20.1	13.78
Merged-chr4-136029552-2	chr4	136029461	136029661	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7912.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.81	7.04	15.4	4.42	34.36	31.98	10.63	13.77	7.67	3.51	4.02	2.19
Merged-chr4-9631283-2	chr4	9631204	9631404	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	12413.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.65	6.54	10.27	10.46	7.36	11.92	6.31	6.73	12.0	9.04	14.07	10.65
Merged-chr6-71476906-1	chr6	71476806	71477006	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16971.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	1.62	3.27	7.99	5.23	7.77	10.98	12.95	8.58	7.08	7.03	5.02	3.76
Merged-chr11-32552813-1	chr11	32552713	32552913	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	19547.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.27	1.76	7.99	3.62	9.41	8.15	3.99	8.52	3.15	6.03	6.53	2.82
Merged-chr2-35183403-1	chr2	35183303	35183503	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026697, exon 7 of 8)	exon (NM_026697, exon 7 of 8)	17717.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	1.62	1.51	5.7	4.42	4.91	2.51	7.64	4.6	2.36	1.0	2.01	2.19
Merged-chr15-25358777-2	chr15	25358679	25358879	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54985.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	1.62	0.5	1.14	2.41	9.41	5.64	4.98	12.36	21.44	10.04	21.61	8.77
Merged-chr12-110687021-3	chr12	110686917	110687117	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-4398.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	12.92	11.57	7.99	2.82	10.23	7.53	7.97	11.5	5.9	7.53	26.13	8.14
Merged-chr10-13200637-1	chr10	13200537	13200737	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7500.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	5.25	8.55	5.7	5.63	12.68	10.35	6.31	13.46	0.98	2.51	0.5	0.94
Merged-chr13-119713629-2	chr13	119713543	119713743	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	23292.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	8.48	6.54	3.42	7.64	7.77	4.08	10.63	16.91	5.9	4.02	11.05	10.65
Merged-chr4-55476425-2	chr4	55476327	55476527	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56048.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.48	8.05	11.41	16.89	14.73	25.09	18.93	25.57	0.2	0.0	1.0	0.0
Merged-chr13-5605064-3	chr13	5604946	5605146	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	253046.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.44	7.29	9.7	11.26	16.77	16.31	13.95	20.33	12.98	11.55	22.11	7.21
Merged-chr11-53774198-3	chr11	53774062	53774262	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159396, exon 6 of 10)	exon (NM_001159396, exon 6 of 10)	3689.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.86	10.82	0.57	0.0	13.09	10.35	2.99	0.87	12.39	6.03	2.51	2.82
Merged-chr18-64929719-1	chr18	64929619	64929819	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	41963.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.85	5.03	9.7	6.03	8.18	5.02	6.31	8.58	2.16	2.51	8.04	4.7
Merged-chr7-19301272-3	chr7	19301167	19301367	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-SeC(e)-TGA|tRNA|tRNA	8778.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	22.21	25.15	14.26	8.85	16.77	28.54	3.99	7.26	8.06	26.61	6.53	14.1
Merged-chr7-127770720-1	chr7	127770620	127770820	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	905.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.81	4.02	9.7	6.44	5.32	2.82	9.3	5.52	5.31	7.03	4.52	5.33
Merged-chr10-82767400-1	chr10	82767300	82767500	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3259.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	6.46	5.03	3.99	6.44	4.91	9.09	1.66	6.48	0.98	0.5	1.0	0.31
Merged-chr12-73445307-1	chr12	73445207	73445407	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35744.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.02	8.3	2.28	2.82	7.36	4.08	7.97	11.16	6.1	3.01	6.03	3.13
Merged-chr7-80778623-2	chr7	80778523	80778723	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	MIR|SINE|MIR	24708.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.08	3.52	7.42	1.61	12.68	5.64	2.99	6.9	10.42	4.02	9.55	14.1
Merged-chr3-84885162-1	chr3	84885062	84885262	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	21017.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.81	4.28	7.42	6.03	2.45	0.31	5.31	9.9	1.38	0.5	3.52	3.45
Merged-chr9-40783529-2	chr9	40783435	40783635	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-17738.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.04	2.52	4.56	3.22	9.0	8.15	6.31	7.71	12.19	12.05	20.1	5.01
Merged-chr1-51525783-1	chr1	51525683	51525883	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-47384.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	11.31	7.29	5.7	5.63	2.45	3.45	3.32	3.17	2.95	3.51	3.01	1.25
Merged-chr17-25188391-3	chr17	25188306	25188506	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197024)	promoter-TSS (NM_001197024)	6.0	NM_001197024	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	4.04	11.07	7.42	7.24	13.91	11.92	10.3	12.28	8.65	19.08	9.55	10.02
Merged-chr11-101316646-1	chr11	101316546	101316746	+	829.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	433.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	6.06	4.53	1.71	2.41	2.86	7.53	3.99	4.09	8.65	8.54	11.56	6.27
Merged-chr13-9388240-3	chr13	9388132	9388332	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	111707.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	11.71	6.04	3.99	13.67	22.09	9.41	9.63	22.23	16.52	13.05	20.6	12.84
Merged-chr10-82629315-3	chr10	82629210	82629410	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-528.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	8.88	8.55	9.7	1.21	11.05	10.35	6.31	7.71	15.14	21.59	19.09	16.29
Merged-chr3-142620164-3	chr3	142620071	142620271	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-492.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	14.54	5.28	2.85	11.66	14.73	5.02	3.99	10.6	8.46	5.02	9.55	5.01
Merged-chr3-87769070-3	chr3	87768976	87769176	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289601)	promoter-TSS (NM_001289601)	-123.0	NM_152799	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	14.13	9.56	9.13	15.28	12.27	19.13	7.64	12.17	8.65	4.02	15.58	5.64
Merged-chr1-39464030-3	chr1	39463950	39464150	+	828.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	14697.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	11.31	10.06	27.95	26.14	15.55	15.05	13.62	35.41	10.03	12.05	24.62	15.98
Merged-chr2-102037278-3	chr2	102037208	102037408	+	828.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	MIRb|SINE|MIR	149152.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	9.29	8.05	11.41	4.02	15.96	28.22	14.62	16.85	15.93	20.59	14.57	7.21
Merged-chr1-157285567-3	chr1	157285463	157285663	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-126789.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	16.96	13.58	15.97	30.16	13.91	12.23	8.64	22.09	11.41	5.52	12.06	8.14
Merged-chr12-3812819-3	chr12	3812718	3812918	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	5658.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	14.94	1.76	10.27	13.27	9.82	8.47	15.61	20.86	7.67	14.06	20.1	11.9
Merged-chr12-52604553-3	chr12	52604456	52604656	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	-2234.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	8.48	10.82	11.98	3.22	11.05	15.99	13.95	10.93	8.26	22.59	24.12	6.89
Merged-chr3-96567314-3	chr3	96567211	96567411	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040409)	promoter-TSS (NR_040409)	-510.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	12.11	9.31	6.28	4.02	10.23	10.66	5.65	10.99	13.18	6.53	18.09	13.47
Merged-chr2-27428255-3	chr2	27428173	27428373	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-665.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.46	10.31	5.7	8.04	16.36	13.8	3.99	5.8	14.55	9.54	15.58	16.6
Merged-chr19-37814662-2	chr19	37814557	37814757	+	828.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116849.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	13.73	10.31	7.99	14.88	12.68	6.59	7.97	10.65	8.06	3.51	6.03	12.53
Merged-chr13-35482504-3	chr13	35482387	35482587	+	828.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177375.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	12.92	7.04	18.83	11.66	9.41	5.64	4.65	17.13	11.41	2.51	9.04	4.7
Merged-chr12-17666783-3	chr12	17666681	17666881	+	828.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24028.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	10.5	6.79	7.42	11.66	11.05	10.98	5.31	8.94	12.78	11.05	25.12	11.9
Merged-chr4-119959573-2	chr4	119959483	119959683	+	828.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	144905.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.81	2.52	0.0	1.61	4.09	11.29	7.31	10.54	15.74	10.04	13.57	7.21
Merged-chr7-98307530-2	chr7	98307412	98307612	+	828.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2030.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.06	7.8	14.83	15.28	14.73	5.33	7.31	15.98	9.64	4.52	3.01	4.07
Merged-chr3-131868409-2	chr3	131868305	131868505	+	828.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-216887.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.83	3.27	6.85	5.63	7.77	5.33	10.63	13.09	14.36	10.04	24.62	10.02
Merged-chr16-91737067-3	chr16	91737008	91737208	+	828.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7737.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	20.19	8.3	8.56	20.11	8.59	8.78	10.3	23.78	13.37	16.07	13.06	10.34
Merged-chr11-80156001-5	chr11	80155906	80156106	+	828.852356	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	1844.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	8.48	6.79	12.55	9.25	4.5	9.09	5.98	3.7	5.9	12.55	6.53	5.95
Merged-chr12-108333175-2	chr12	108333085	108333285	+	828.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1131.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	12.92	12.58	15.4	20.91	4.91	14.74	9.3	5.27	5.7	8.54	9.55	6.89
Merged-chr13-45395584-2	chr13	45395498	45395698	+	828.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	5856.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	11.31	7.04	10.27	6.03	3.68	16.62	11.63	10.21	3.54	11.05	3.01	3.13
Merged-chr14-118137651-2	chr14	118137542	118137742	+	828.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021434, intron 1 of 8)	intron (NM_021434, intron 1 of 8)	515.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	3.23	8.05	3.42	10.46	9.41	6.9	16.61	13.01	12.98	6.53	18.59	10.96
Merged-chr8-77116895-3	chr8	77116754	77116954	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	214346.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	10.09	6.04	6.28	11.26	9.41	8.78	5.65	14.16	27.54	25.61	13.57	18.17
Merged-chr17-5276098-3	chr17	5276017	5276217	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	142650.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	11.71	12.58	15.4	16.89	13.91	9.41	16.61	18.53	15.34	8.54	11.56	7.52
Merged-chr16-31429867-3	chr16	31429760	31429960	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152205)	promoter-TSS (NR_152205)	-84.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	5.25	8.05	9.7	5.63	14.32	18.19	9.63	14.55	14.95	11.55	24.12	15.04
Merged-chr2-128871840-3	chr2	128871725	128871925	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	7893.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	7.67	9.31	8.56	24.94	10.64	18.81	16.94	32.16	21.64	15.57	16.58	15.04
Merged-chr12-108650720-3	chr12	108650616	108650816	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 3 of 14)	L1M5|LINE|L1	-7904.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	1.62	7.29	22.82	2.41	12.27	11.29	18.6	16.23	19.28	16.57	30.15	17.23
Merged-chr6-113659864-3	chr6	113659760	113659960	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	21393.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.27	7.29	15.97	6.03	19.23	31.36	26.91	26.33	16.33	13.56	22.11	9.08
Merged-chr7-19843790-3	chr7	19843690	19843890	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8213.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	9.69	12.07	6.28	8.45	12.68	17.87	2.33	7.68	14.55	12.55	16.08	9.08
Merged-chr2-78397109-3	chr2	78397013	78397213	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	159566.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	8.88	6.04	9.13	17.29	30.27	11.92	17.61	26.78	32.65	13.56	20.6	12.22
Merged-chr13-59835348-3	chr13	59835274	59835474	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12227.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	12.92	12.07	4.56	15.28	13.91	14.11	8.97	8.05	6.69	1.0	8.04	7.52
Merged-chr13-59847798-3	chr13	59847704	59847904	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-24657.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.62	11.07	11.41	10.86	6.14	9.72	8.64	9.31	12.19	3.51	20.1	4.07
Merged-chr3-109456536-1	chr3	109456436	109456636	+	828.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	115853.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.62	4.02	7.42	8.85	13.91	9.09	6.98	16.65	3.15	1.0	7.54	2.51
Merged-chr8-23038609-2	chr8	23038508	23038708	+	828.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	3509.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	1.62	1.51	2.85	3.22	4.91	3.45	3.32	6.28	34.22	47.2	29.65	12.84
Merged-chr7-64038095-1	chr7	64037995	64038195	+	828.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99180.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.23	5.53	18.25	3.22	14.32	5.33	7.31	9.73	7.47	3.51	10.55	6.27
Merged-chr19-36554816-2	chr19	36554713	36554913	+	828.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172637, exon 1 of 21)	exon (NM_172637, exon 1 of 21)	174.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	10.5	13.58	8.56	4.83	5.73	14.11	9.63	6.84	7.08	6.53	13.57	4.7
Merged-chr17-26235578-3	chr17	26235552	26235752	+	828.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8590.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	6.46	4.78	8.56	12.47	10.64	7.53	10.96	6.67	5.7	5.02	10.55	11.9
Merged-chr13-81132114-3	chr13	81131943	81132143	+	828.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	167969.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.08	3.27	2.28	7.24	9.0	9.09	7.97	5.38	6.1	8.54	7.54	3.45
Merged-chr6-127359523-3	chr6	127359444	127359644	+	828.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51577.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	8.08	23.39	10.27	11.26	7.77	10.66	7.97	12.67	5.9	8.03	12.56	9.71
Merged-chr3-87616250-2	chr3	87616159	87616359	+	828.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1300.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	9.69	10.31	20.54	8.85	16.77	7.53	5.65	9.93	12.78	6.03	6.03	4.7
Merged-chr18-57636025-3	chr18	57635904	57636104	+	828.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045360, intron 2 of 2)	intron (NR_045360, intron 2 of 2)	2581.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	10.9	6.79	10.84	12.87	18.0	10.66	8.3	17.33	8.85	14.56	12.06	15.35
Merged-chr8-103482480-1	chr8	103482380	103482580	+	828.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121319.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.4	3.02	5.13	1.61	9.41	6.27	8.97	10.79	3.93	7.53	5.02	5.01
Merged-chr12-111417577-3	chr12	111417459	111417659	+	828.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028807, exon 1 of 13)	5' UTR (NM_028807, exon 1 of 13)	114.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	6.06	7.04	6.85	5.63	12.68	5.33	10.63	2.61	11.8	7.03	15.58	5.01
Merged-chr13-24338460-3	chr13	24338343	24338543	+	828.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	MTEa|LTR|ERVL-MaLR	11039.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	6.46	7.04	8.56	14.88	17.18	11.92	16.28	22.82	7.67	20.08	21.61	18.48
Merged-chr12-86893922-3	chr12	86893818	86894018	+	828.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9104.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	9.29	6.29	3.99	10.86	12.27	8.78	6.64	9.7	12.78	8.03	19.09	10.96
Merged-chr4-53265544-1	chr4	53265444	53265644	+	828.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033140)	promoter-TSS (NR_033140)	-52.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	9.29	5.79	3.42	4.83	8.18	6.59	6.64	10.79	4.33	4.52	7.03	4.39
Merged-chr8-128610931-2	chr8	128610849	128611049	+	828.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74705.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	8.08	4.02	4.56	8.45	13.5	7.21	4.65	11.1	7.08	9.04	16.58	9.4
Merged-chr17-50071772-2	chr17	50071665	50071865	+	828.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 4 of 9)	ORR1D2|LTR|ERVL-MaLR	118732.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	9.29	8.3	3.42	7.24	17.59	25.09	13.95	15.48	4.33	0.0	6.03	2.19
Merged-chr3-115924547-2	chr3	115924459	115924659	+	828.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027193, intron 5 of 7)	intron (NM_027193, intron 5 of 7)	36376.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	8.88	10.06	15.4	16.09	18.0	8.15	16.94	26.75	1.18	0.0	2.01	0.0
Merged-chr8-36952416-4	chr8	36952319	36952519	+	828.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	23.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.88	11.32	16.54	15.28	15.96	10.66	13.29	13.68	11.8	8.03	9.04	12.22
Merged-chr15-9070495-3	chr15	9070419	9070619	+	828.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-741.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	10.09	10.56	3.42	14.48	9.41	10.98	10.63	8.55	16.33	8.03	9.04	7.83
Merged-chr13-54824876-3	chr13	54824760	54824960	+	828.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35455.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	13.33	11.82	16.54	16.09	13.91	16.62	8.64	19.65	7.67	2.01	8.54	7.21
Merged-chr19-43921576-1	chr19	43921476	43921676	+	828.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	18622.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	8.08	6.04	10.84	3.22	8.59	14.74	11.29	16.54	2.95	5.52	2.01	4.07
Merged-chr10-25411630-3	chr10	25411528	25411728	+	828.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	3260.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	16.96	20.37	21.11	8.85	10.23	24.15	14.95	5.66	8.46	8.03	5.53	3.45
Merged-chr17-70994700-2	chr17	70994610	70994810	+	828.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357820, exon 4 of 4)	exon (NM_001357820, exon 4 of 4)	3302.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	21.0	15.09	13.69	15.28	18.41	8.15	11.96	1.32	4.33	7.53	2.51	3.13
Merged-chr18-46334278-2	chr18	46334158	46334358	+	828.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22330.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	11.31	2.52	5.7	5.63	14.73	11.29	4.98	16.6	15.34	14.06	5.53	11.28
Merged-chr6-54022550-2	chr6	54022448	54022648	+	828.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17384.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.65	2.01	7.99	13.27	5.32	7.53	5.31	6.17	21.05	13.05	29.14	14.41
Merged-chr1-87026166-2	chr1	87026063	87026263	+	828.575012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	Lx8b|LINE|L1	63765.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	8.08	3.02	10.27	5.23	8.59	9.09	11.63	10.04	12.78	11.05	8.54	11.59
Merged-chr3-89905205-3	chr3	89905122	89905322	+	828.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7974.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	16.96	10.82	13.69	8.04	9.41	21.01	15.94	13.07	16.52	16.57	29.65	13.78
Merged-chr10-122736281-3	chr10	122736176	122736376	+	828.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	56961.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	7.27	9.81	6.85	6.84	6.14	8.15	5.31	7.32	25.77	9.54	21.1	22.24
Merged-chr10-121373148-3	chr10	121373054	121373254	+	828.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 2 of 13)	MTD|LTR|ERVL-MaLR	8064.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	17.77	11.32	22.82	10.86	11.05	10.35	10.63	16.07	15.93	18.08	11.05	7.52
Merged-chr4-56121843-3	chr4	56121716	56121916	+	828.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-589341.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.85	8.55	6.85	6.03	13.09	19.13	14.62	13.21	11.41	11.05	12.56	4.07
Merged-chr13-52618767-2	chr13	52618674	52618874	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	21892.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.85	4.28	3.42	5.63	13.09	5.64	5.98	9.17	10.82	6.03	5.53	10.96
Merged-chr4-155840484-1	chr4	155840384	155840584	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024263, intron 1 of 9)	intron (NM_024263, intron 1 of 9)	804.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	4.04	3.52	6.28	2.82	5.73	7.21	4.65	9.17	3.15	3.51	7.03	2.82
Merged-chr1-91757525-1	chr1	91757425	91757625	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43936.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	2.83	4.02	4.56	4.02	7.36	5.64	10.3	7.18	4.72	3.01	4.52	3.45
Merged-chr10-121613791-2	chr10	121613691	121613891	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12541.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	8.08	4.02	5.13	7.24	8.18	6.9	12.95	21.2	12.78	7.03	18.09	12.22
Merged-chr1-52909959-1	chr1	52909859	52910059	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146108, intron 11 of 13)	intron (NM_146108, intron 11 of 13)	42881.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	7.27	3.27	7.99	17.7	7.77	6.9	7.97	15.36	3.74	7.03	4.52	4.07
Merged-chr11-43384595-3	chr11	43384479	43384679	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10118.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	8.88	10.56	9.13	6.44	10.23	17.87	7.97	7.43	19.08	16.57	15.58	9.08
Merged-chr18-70415604-2	chr18	70415511	70415711	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-56843.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	9.29	7.55	14.26	20.11	0.82	0.63	3.65	0.67	18.88	14.56	33.16	11.59
Merged-chr6-16856890-1	chr6	16856790	16856990	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41551.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	1.62	0.5	5.7	5.63	9.41	1.88	3.65	11.64	2.16	2.01	3.52	6.58
Merged-chr11-22850312-3	chr11	22850205	22850405	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	ID_B1|SINE|B4	9430.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	8.88	11.32	24.53	13.67	6.14	26.03	17.27	34.71	24.39	9.54	14.57	10.96
Merged-chr4-145017941-2	chr4	145017840	145018040	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	124803.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.86	5.03	10.27	15.28	11.05	7.53	13.95	33.03	6.29	1.0	10.05	3.76
Merged-chr2-102360740-1	chr2	102360640	102360840	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020267, intron 2 of 4)	intron (NM_020267, intron 2 of 4)	40160.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.0	1.01	0.0	0.4	4.91	6.59	8.97	13.85	2.95	2.51	7.03	9.71
Merged-chr15-12312068-2	chr15	12311979	12312179	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9417.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.44	4.53	9.13	10.46	11.05	26.97	9.63	13.26	15.34	11.05	9.55	5.01
Merged-chr3-117360259-2	chr3	117360109	117360309	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177664, exon 1 of 7)	exon (NM_177664, exon 1 of 7)	667.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	2.02	2.52	3.99	7.24	6.14	2.51	6.31	12.22	4.72	12.55	2.51	5.33
Merged-chr16-5050872-2	chr16	5050761	5050961	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001079814)	promoter-TSS (NM_001079814)	804.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	10.9	5.53	12.55	14.08	9.82	5.64	1.99	10.71	14.16	9.04	9.55	13.47
Merged-chr2-4929480-2	chr2	4929376	4929576	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010726, intron 5 of 8)	MTC|LTR|ERVL-MaLR	10480.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	3.63	4.78	6.28	4.02	5.73	8.78	10.63	8.47	20.65	14.06	33.67	8.46
Merged-chr5-26905373-2	chr5	26905274	26905474	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	596.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	1.62	2.01	0.0	1.21	9.0	17.56	10.96	16.93	14.36	10.04	11.05	6.89
Merged-chr2-124710360-3	chr2	124710231	124710431	+	828.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	56750.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.88	12.83	9.13	7.24	4.5	26.03	9.97	2.19	18.29	8.54	25.63	7.52
Merged-chr4-128768325-3	chr4	128768234	128768434	+	828.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001009819, exon 5 of 5)	3' UTR (NM_001009819, exon 5 of 5)	9076.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	12.92	17.1	17.11	16.89	9.0	22.89	6.98	21.42	12.19	5.52	8.54	8.77
Merged-chr10-58529957-3	chr10	58529814	58530014	+	828.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 10 of 15)	ORR1F|LTR|ERVL-MaLR	31977.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	11.31	12.58	7.99	7.64	5.73	15.37	5.98	6.87	21.64	21.09	17.08	14.72
Merged-chr6-120090675-3	chr6	120090562	120090762	+	828.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2718.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	12.52	6.54	7.99	4.02	13.5	12.54	5.31	9.95	12.39	13.05	6.03	4.07
Merged-chr13-111967225-3	chr13	111967110	111967310	+	828.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99274.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	11.71	6.29	11.41	21.32	30.68	44.21	34.55	61.51	22.03	12.05	24.12	19.74
Merged-chr5-123848378-2	chr5	123848265	123848465	+	828.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17151.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.06	8.8	1.14	4.83	3.27	8.47	0.66	6.34	17.51	11.55	17.08	16.6
Merged-chr9-82942069-2	chr9	82941977	82942177	+	828.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081216, intron 7 of 39)	intron (NM_001081216, intron 7 of 39)	33412.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	3.23	2.01	7.42	0.0	15.55	15.99	8.64	24.17	9.64	8.03	20.6	10.96
Merged-chr19-34633656-3	chr19	34633566	34633766	+	828.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053217, intron 1 of 2)	intron (NM_053217, intron 1 of 2)	-3855.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	11.71	7.8	13.69	14.48	18.0	14.11	20.59	24.28	13.18	12.55	12.06	11.9
Merged-chr9-48444045-2	chr9	48443953	48444153	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10291.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	3.23	9.31	17.68	12.07	4.09	5.64	4.32	3.17	17.7	21.59	16.08	15.98
Merged-chr17-88190927-2	chr17	88190842	88191042	+	828.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65430.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	6.46	4.28	2.85	1.21	9.0	5.33	3.32	6.87	19.67	18.08	21.1	16.92
Merged-chr1-156455236-2	chr1	156455148	156455348	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	ORR1B1|LTR|ERVL-MaLR	19080.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	16.15	9.56	23.96	9.65	7.77	16.31	14.62	9.7	4.33	3.01	6.03	3.45
Merged-chr6-143751406-2	chr6	143751298	143751498	+	828.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100110.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	1.62	2.26	5.13	7.64	8.59	9.41	6.64	14.61	10.82	2.51	7.03	9.08
Merged-chr8-36172490-2	chr8	36172362	36172562	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16452.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	10.09	6.54	6.28	4.83	16.77	13.17	12.29	11.92	3.54	4.02	2.01	0.94
Merged-chr5-117388536-2	chr5	117388430	117388630	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028128, intron 1 of 10)	intron (NM_028128, intron 1 of 10)	493.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	13.33	12.58	13.12	9.65	5.32	5.02	5.65	6.84	5.51	6.03	19.09	4.07
Merged-chr7-143464094-2	chr7	143463997	143464197	+	828.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3047.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	8.08	4.78	7.99	2.41	9.0	13.17	0.66	7.71	13.77	6.03	14.07	9.4
Merged-chr11-99068666-3	chr11	99068585	99068785	+	828.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172564, intron 12 of 12)	B4A|SINE|B4	20621.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	10.9	13.33	12.55	6.44	11.45	4.39	10.3	13.4	19.87	10.04	13.57	20.05
Merged-chr14-8102747-3	chr14	8102634	8102834	+	828.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	4523.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	7.27	9.81	22.82	12.47	13.09	10.98	23.92	27.11	12.19	14.56	21.1	9.08
Merged-chr10-91182699-1	chr10	91182599	91182799	+	828.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11080.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.81	4.02	2.28	2.82	6.55	4.39	8.64	5.69	3.15	5.02	6.53	9.08
Merged-chr15-57975645-1	chr15	57975545	57975745	+	828.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10258.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	4.85	6.79	0.0	9.65	12.27	11.29	5.31	8.58	12.59	8.03	15.58	8.77
Merged-chr10-8416305-1	chr10	8416205	8416405	+	828.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	102520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	2.42	3.77	1.71	7.24	7.36	6.59	8.3	10.51	12.98	6.03	8.04	4.7
Merged-chr8-106972969-4	chr8	106972840	106973040	+	828.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	37190.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.23	7.04	5.13	4.83	15.14	10.03	5.65	6.73	8.85	11.05	7.03	3.76
Merged-chr6-88821101-3	chr6	88821012	88821212	+	828.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166249, intron 6 of 7)	intron (NM_001166249, intron 6 of 7)	20823.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	10.5	8.3	2.28	6.44	11.05	16.93	7.64	13.01	9.64	15.57	14.07	2.51
Merged-chr6-72107172-3	chr6	72107074	72107274	+	828.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9566.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.86	13.58	22.25	12.47	8.18	19.44	11.96	20.86	11.01	9.04	8.04	8.77
Merged-chr13-37827274-2	chr13	37827196	37827396	+	828.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039188)	intron (NM_001177868, intron 1 of 9)	-97.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.65	3.02	5.13	6.44	11.05	10.35	8.64	6.79	11.6	7.53	13.57	10.02
Merged-chr10-53449350-1	chr10	53449250	53449450	+	828.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39468.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	5.25	3.27	4.56	4.02	11.86	6.9	10.63	11.61	6.29	9.54	11.05	8.46
Merged-chrX-133692319-3	chrX	133692216	133692416	+	828.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153117, intron 1 of 3)	intron (NR_153117, intron 1 of 3)	-3323.0	NM_001105246	279653.0	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	9.69	12.07	11.41	13.27	11.45	13.48	3.32	16.23	14.75	8.54	20.6	14.72
Merged-chr13-52823965-3	chr13	52823891	52824091	+	828.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-66786.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	6.86	2.26	14.26	6.03	14.73	12.23	6.31	10.51	12.78	13.05	18.09	4.7
Merged-chr10-78429390-1	chr10	78429290	78429490	+	828.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3720.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	4.85	12.07	8.56	1.21	7.77	23.83	4.65	2.94	20.26	26.11	17.08	8.46
Merged-chr5-136464486-1	chr5	136464386	136464586	+	828.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	L3|LINE|CR1	-88683.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	4.44	6.29	5.13	10.46	4.91	11.6	7.97	8.5	7.08	4.52	10.05	5.64
Merged-chr5-103817951-3	chr5	103817836	103818036	+	828.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63363.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	7.27	18.11	9.7	11.66	11.86	17.25	3.99	5.21	17.9	19.08	12.56	10.02
Merged-chr2-45109668-5	chr2	45109558	45109758	+	828.1400150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	CpG	619.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	8.08	17.1	10.84	2.01	8.18	37.0	9.97	3.22	18.1	27.11	16.08	7.52
Merged-chr8-35109829-2	chr8	35109748	35109948	+	828.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-144158.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.85	9.31	6.28	10.86	8.18	10.35	10.3	17.72	7.87	7.53	3.52	10.65
Merged-chr11-69120297-2	chr11	69120220	69120420	+	828.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033041)	promoter-TSS (NM_033041)	-133.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	17.36	11.32	7.42	7.64	6.55	5.64	7.31	2.94	12.0	14.56	8.04	16.6
Merged-chr15-5708650-3	chr15	5708547	5708747	+	828.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	212329.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	14.54	13.08	9.7	7.64	20.86	11.6	6.98	15.95	17.31	14.06	15.58	9.71
Merged-chr11-114892466-3	chr11	114892363	114892563	+	828.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359812, intron 2 of 7)	RLTR12B2|LTR|ERVK	2422.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	13.73	3.52	14.83	11.26	10.64	12.54	10.96	16.26	11.01	7.53	27.13	9.71
Merged-chr5-113812868-3	chr5	113812765	113812965	+	828.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12513.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	13.73	8.05	10.27	8.45	9.41	18.81	12.95	11.5	17.51	17.07	27.64	13.47
Merged-chr9-51028846-3	chr9	51028749	51028949	+	828.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19776.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	12.92	12.32	22.82	28.96	9.82	10.03	8.97	13.49	12.78	4.02	10.55	9.71
Merged-chr2-25240925-3	chr2	25240832	25241032	+	828.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1035.0	NM_026415	67859.0	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	15.34	14.09	7.99	8.85	9.0	17.25	7.64	13.6	12.59	11.55	13.06	7.21
Merged-chr10-127538462-2	chr10	127538386	127538586	+	828.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008512, exon 89 of 89)	3' UTR (NM_008512, exon 89 of 89)	-3927.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	8.88	8.8	1.14	0.4	7.36	7.21	11.96	5.89	4.72	7.03	10.05	11.9
Merged-chr14-114949054-2	chr14	114948953	114949153	+	828.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3105.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	7.27	1.51	6.85	8.85	13.09	8.15	11.29	8.64	7.47	10.04	10.55	2.19
Merged-chr2-128124680-3	chr2	128124522	128124722	+	828.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028765)	TTS (NM_028765)	-1416.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.44	9.06	9.7	2.41	6.95	24.46	12.29	8.07	18.29	19.58	11.05	8.46
Merged-chr18-39737890-3	chr18	39737795	39737995	+	828.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35602.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	8.48	12.83	10.27	4.83	24.96	32.61	20.26	10.01	19.08	24.1	10.55	13.47
Merged-chr1-36133277-3	chr1	36133172	36133372	+	828.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	11041.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	7.67	6.29	1.71	2.82	14.73	11.6	19.6	17.07	15.14	7.03	7.03	12.22
Merged-chr13-25793213-3	chr13	25793109	25793309	+	828.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173107.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	10.9	8.05	5.7	16.49	9.41	10.98	15.28	19.96	18.88	17.07	23.11	10.65
Merged-chr7-25187843-3	chr7	25187773	25187973	+	828.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29852.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	8.08	12.58	13.69	5.63	12.27	19.44	3.99	16.63	18.49	20.08	12.56	8.46
Merged-chr10-21465552-1	chr10	21465452	21465652	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88252.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	3.23	7.8	2.28	4.83	15.96	12.86	3.32	7.99	6.29	5.02	9.04	11.9
Merged-chr7-35423224-1	chr7	35423124	35423324	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153799, intron 11 of 19)	intron (NR_153799, intron 11 of 19)	-25868.0	NM_001199015	30962.0	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	2.42	0.5	1.71	0.8	1.64	0.0	1.0	2.07	11.8	3.01	13.57	17.23
Merged-chr15-36935425-1	chr15	36935325	36935525	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	71977.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.25	0.0	1.61	6.55	2.51	2.66	7.68	4.72	2.51	6.03	2.82
Merged-chr5-108066277-1	chr5	108066177	108066377	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253880, intron 1 of 12)	intron (NM_001253880, intron 1 of 12)	603.0	NR_152817	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	4.04	3.52	0.57	4.02	6.95	6.27	3.32	7.96	4.72	0.0	5.02	6.58
Merged-chr11-59230431-3	chr11	59230352	59230552	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2185.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	12.92	11.32	6.85	11.26	15.14	13.8	11.96	9.5	10.23	15.06	8.54	5.01
Merged-chr8-13669709-1	chr8	13669609	13669809	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7878.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.67	1.01	2.28	16.09	3.68	7.53	7.31	10.71	8.46	3.51	10.05	7.21
Merged-chr16-57176490-3	chr16	57176403	57176603	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-9171.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	8.08	7.8	16.54	4.83	6.14	9.41	6.64	13.32	15.34	15.57	15.58	7.21
Merged-chr2-154657616-2	chr2	154657521	154657721	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	595.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.85	10.06	10.84	13.27	10.64	18.81	4.98	8.8	13.57	22.59	11.05	18.17
Merged-chr9-56114030-3	chr9	56113933	56114133	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	24057.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	10.5	3.52	9.7	5.23	12.27	15.05	10.96	13.37	13.77	24.1	20.6	11.59
Merged-chr14-31593681-3	chr14	31593567	31593767	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-16284.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	13.33	9.81	10.27	5.63	4.09	15.37	7.31	7.91	16.13	17.57	15.07	5.33
Merged-chr15-73592893-1	chr15	73592793	73592993	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	MTD|LTR|ERVL-MaLR	3633.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	1.21	0.0	3.42	10.86	2.86	2.82	6.64	7.77	0.59	1.51	7.54	1.57
Merged-chr1-150335315-1	chr1	150335215	150335415	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040603, intron 2 of 3)	intron (NR_040603, intron 2 of 3)	11456.0	NR_040603	75584.0	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	1.21	0.5	0.0	0.0	4.09	10.35	1.66	7.12	6.69	8.03	8.54	5.33
Merged-chr7-80799390-1	chr7	80799290	80799490	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	3941.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.06	2.52	1.14	5.63	2.86	7.21	1.33	3.03	12.98	7.03	14.07	5.95
Merged-chr19-5425681-2	chr19	5425601	5425801	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024176)	promoter-TSS (NM_024176)	557.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	11.31	11.32	1.14	3.22	11.45	11.29	4.32	4.51	18.69	13.05	8.54	2.19
Merged-chr15-57893357-3	chr15	57893293	57893493	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-975.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	2.83	4.28	14.83	10.05	5.32	3.14	6.64	6.39	5.51	2.51	8.54	5.64
Merged-chr3-135200829-1	chr3	135200729	135200929	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11734.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.4	3.52	0.57	3.22	1.64	4.08	8.3	6.45	5.11	6.03	4.52	3.76
Merged-chr1-131077030-1	chr1	131076930	131077130	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	20813.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.04	5.03	1.14	0.0	12.27	10.66	2.66	1.74	5.11	9.54	1.0	2.19
Merged-chr15-97881576-1	chr15	97881476	97881676	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	26720.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	2.83	6.04	5.13	3.22	10.23	3.14	5.31	8.61	2.95	5.52	7.03	2.51
Merged-chr14-102492586-1	chr14	102492486	102492686	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	490046.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	3.23	3.02	10.27	7.64	8.18	4.39	8.3	13.04	6.88	5.52	8.54	5.95
Merged-chr1-78910504-1	chr1	78910404	78910604	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	93593.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	3.23	4.53	1.14	6.84	9.41	3.76	6.98	8.47	15.54	7.53	6.03	6.58
Merged-chr4-3744010-1	chr4	3743910	3744110	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 4 of 12)	MIRb|SINE|MIR	29046.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	8.88	11.82	7.99	11.66	11.45	10.35	8.3	5.69	10.23	10.54	9.04	9.08
Merged-chr13-35955539-1	chr13	35955439	35955639	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12367.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.85	8.3	26.24	16.89	5.73	2.82	2.99	10.96	2.16	2.01	1.51	1.88
Merged-chr17-17648962-2	chr17	17648852	17649052	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24463.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	9.69	2.77	2.28	8.04	2.45	3.76	12.62	11.13	5.11	8.03	11.56	8.77
Merged-chr13-113442455-2	chr13	113442377	113442577	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60367.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	1.21	6.79	0.0	0.8	2.45	1.88	7.64	14.66	3.54	16.07	10.55	6.58
Merged-chr4-147432483-1	chr4	147432383	147432583	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-120794.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	6.06	2.26	1.71	3.22	1.64	1.88	2.66	1.85	4.52	1.51	7.54	10.65
Merged-chr1-165132726-1	chr1	165132626	165132826	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28047.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	3.63	5.79	9.13	5.23	2.45	5.64	7.64	6.45	3.54	6.53	4.02	7.21
Merged-chr8-94379230-1	chr8	94379130	94379330	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7199.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.04	12.32	12.55	2.82	1.64	6.9	4.65	1.93	6.88	5.52	10.55	2.82
Merged-chr19-44299501-1	chr19	44299401	44299601	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009128, intron 3 of 5)	intron (NM_009128, intron 3 of 5)	-3670.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	2.83	2.52	2.28	6.44	8.18	1.88	8.97	8.5	1.97	0.0	3.01	2.82
Merged-chr6-30357962-2	chr6	30357859	30358059	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33061.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	2.83	4.53	4.56	8.04	5.73	12.86	1.33	6.64	12.0	15.57	10.55	6.89
Merged-chr6-117543569-1	chr6	117543469	117543669	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48334.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	7.67	2.01	3.99	4.02	4.09	7.84	3.32	6.98	6.1	11.05	4.52	6.27
Merged-chr12-113115523-1	chr12	113115423	113115623	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346696, intron 2 of 19)	MTE2a|LTR|ERVL-MaLR	17245.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	4.04	9.31	1.71	5.63	6.95	8.78	1.66	9.14	4.52	2.51	10.55	2.82
Merged-chr13-96671966-1	chr13	96671866	96672066	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1030.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	2.42	5.28	2.28	4.42	4.5	0.31	1.66	3.36	11.21	2.51	3.01	8.14
Merged-chrUn_JH584304-66180-1	chrUn_JH584304	66080	66280	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6491.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.42	12.05	20.1	25.37
Merged-chr12-35019191-1	chr12	35019091	35019291	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-27998.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.85	3.27	6.85	4.02	8.18	7.21	2.33	8.19	7.08	12.05	5.02	2.51
Merged-chr9-85762561-2	chr9	85762464	85762664	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13230.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	1.51	8.56	8.85	7.36	3.45	8.64	15.81	18.29	22.59	42.71	11.59
Merged-chr11-44538996-3	chr11	44538855	44539055	+	827.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	19578.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	13.33	10.82	11.98	9.65	6.95	10.98	8.3	10.99	16.92	5.02	14.57	17.54
Merged-chr2-131545608-3	chr2	131545512	131545712	+	827.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013460, exon 2 of 2)	3' UTR (NM_013460, exon 2 of 2)	16673.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	9.69	15.09	16.54	3.22	12.27	10.66	5.31	11.64	15.93	10.04	11.56	8.77
Merged-chr11-101981104-3	chr11	101981056	101981256	+	827.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 2 of 2)	B4A|SINE|B4	3635.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	14.54	9.06	7.99	10.46	7.36	6.27	1.33	4.57	15.74	15.06	14.57	7.52
Merged-chr15-78574461-3	chr15	78574364	78574564	+	827.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155437)	TTS (NR_155437)	-1681.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	6.86	9.56	13.12	12.07	4.09	10.03	4.65	11.5	13.96	8.03	13.06	8.14
Merged-chr6-37417713-3	chr6	37417612	37417812	+	827.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	24436.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	13.33	11.57	6.85	7.24	9.0	8.15	9.97	9.76	23.01	11.05	11.56	9.08
Merged-chr18-24652177-3	chr18	24652087	24652287	+	827.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1504.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	8.48	5.03	17.11	12.87	16.36	12.86	16.28	20.8	16.92	8.54	11.05	9.4
Merged-chr11-67586561-2	chr11	67586475	67586675	+	827.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109657)	promoter-TSS (NM_001109657)	75.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.4	5.03	10.27	3.22	6.95	23.2	20.59	12.28	12.39	12.55	16.58	15.04
Merged-chr15-53157458-2	chr15	53157356	53157556	+	827.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	188727.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	10.09	8.3	10.84	11.66	15.14	23.83	16.28	23.19	12.0	8.03	3.52	1.25
Merged-chr4-136071504-3	chr4	136071306	136071506	+	827.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-18035.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.85	4.53	1.14	2.82	5.32	2.51	2.99	4.37	7.47	5.52	6.03	7.21
Merged-chr14-67211907-3	chr14	67211813	67212013	+	827.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21379.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	8.08	8.05	5.13	9.25	11.05	14.42	4.65	11.21	20.85	25.11	19.09	9.4
Merged-chr7-19764073-3	chr7	19763965	19764165	+	827.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020486, exon 8 of 15)	exon (NM_020486, exon 8 of 15)	6467.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	14.54	13.58	15.97	10.86	11.86	8.78	12.29	20.92	19.67	9.54	13.06	11.59
Merged-chr1-74240407-2	chr1	74240339	74240539	+	827.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3922.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	7.67	3.52	12.55	3.62	4.91	6.59	8.97	5.92	12.19	10.04	3.52	9.71
Merged-chr18-49643922-2	chr18	49643819	49644019	+	827.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111682.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	6.46	5.53	8.56	16.89	11.45	13.17	9.3	20.47	17.9	5.52	19.6	10.02
Merged-chr8-110604767-3	chr8	110604669	110604869	+	827.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 85 of 86)	intron (NM_172916, intron 85 of 86)	-13798.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	15.75	10.06	12.55	16.09	4.5	9.09	7.31	12.81	12.98	12.05	24.12	12.22
Merged-chr17-36266044-3	chr17	36265953	36266153	+	827.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357889, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	5378.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	17.77	10.56	6.28	12.47	9.0	5.33	5.31	8.02	20.06	30.63	17.59	6.58
Merged-chr7-16242275-3	chr7	16242219	16242419	+	827.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146005)	promoter-TSS (NM_001146005)	12.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	5.65	5.28	10.27	13.67	6.14	4.08	11.96	7.88	6.69	8.54	9.04	8.46
Merged-chr18-82976144-3	chr18	82976023	82976223	+	827.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-55563.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	10.09	6.04	11.41	6.84	17.59	10.98	4.98	15.34	24.98	10.54	24.62	4.7
Merged-chr15-99904567-3	chr15	99904464	99904664	+	827.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27094.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	17.77	14.59	11.98	8.85	9.82	15.68	6.98	9.53	11.8	18.58	15.58	10.02
Merged-chr15-88732603-3	chr15	88732525	88732725	+	827.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	1594.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	6.86	10.06	6.85	18.1	10.23	8.15	8.97	12.06	14.95	13.05	17.08	8.77
Merged-chr11-76736139-3	chr11	76736018	76736218	+	827.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27460.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	5.65	16.35	24.53	9.65	15.14	9.09	14.28	21.36	3.54	3.51	9.55	10.34
Merged-chrX-38402314-2	chrX	38402219	38402419	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290485, intron 8 of 8)	intron (NM_001290485, intron 8 of 8)	54141.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	5.25	5.53	6.85	6.03	12.68	9.41	10.3	18.76	10.82	3.51	8.04	15.66
Merged-chr18-66270847-1	chr18	66270747	66270947	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	20991.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	6.46	4.53	0.0	2.41	6.55	9.41	8.3	9.9	4.52	7.53	4.52	7.83
Merged-chr14-26466128-2	chr14	26466035	26466235	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 5 of 22)	intron (NM_001310445, intron 5 of 22)	68489.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	7.67	5.53	5.7	6.84	15.55	17.87	11.96	13.6	13.77	14.56	7.54	4.7
Merged-chr2-12174930-2	chr2	12174828	12175028	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 22 of 29)	intron (NM_001001309, intron 22 of 29)	-126318.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.42	1.76	3.42	7.24	9.0	8.15	9.97	12.56	13.96	3.51	18.59	6.27
Merged-chr18-46298825-3	chr18	46298724	46298924	+	827.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160399, intron 2 of 9)	Lx8|LINE|L1	13104.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	8.48	6.54	7.42	15.69	13.91	9.41	4.32	16.63	14.95	27.62	18.09	11.9
Merged-chr7-127278509-3	chr7	127278399	127278599	+	827.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4440.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	19.38	13.33	27.38	11.26	8.59	9.09	5.98	8.02	17.11	21.09	15.58	12.84
Merged-chr9-45954515-4	chr9	45954353	45954553	+	827.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152206, exon 1 of 1)	non-coding (NR_152206, exon 1 of 1)	467.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	6.46	7.8	7.99	6.03	11.05	4.7	6.64	6.59	7.47	12.05	14.07	5.01
Merged-chr19-43815949-3	chr19	43815842	43816042	+	827.703674	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013806, intron 16 of 31)	PB1D11|SINE|Alu	-22861.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	1.62	1.01	0.57	4.02	2.86	1.88	1.0	2.78	5.7	5.52	5.02	3.76
Merged-chr6-136661309-8	chr6	136661134	136661334	+	827.677124	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	659.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.85	3.77	12.55	4.02	6.55	5.96	7.31	9.08	7.47	3.51	6.53	8.46
Merged-chr12-100429145-1	chr12	100429045	100429245	+	827.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	91677.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.25	3.02	5.7	4.83	7.36	16.93	10.63	15.87	3.15	2.01	8.54	5.64
Merged-chr3-108442501-1	chr3	108442401	108442601	+	827.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	2758.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	1.62	7.8	6.28	4.02	8.59	5.33	7.31	8.83	2.75	1.51	1.0	2.82
Merged-chr3-94476549-1	chr3	94476449	94476649	+	827.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1746.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	5.65	5.03	3.42	8.04	9.82	13.8	5.98	9.25	6.69	6.03	5.53	3.45
Merged-chr2-37772049-3	chr2	37771944	37772144	+	827.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4205.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	11.31	8.8	7.42	17.29	12.68	15.68	12.62	9.39	7.87	11.55	8.54	6.58
Merged-chr12-70234596-1	chr12	70234496	70234696	+	827.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045174)	TTS (NR_045174)	6755.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	4.04	3.27	2.85	3.22	4.5	2.51	2.66	1.49	19.67	11.55	26.13	5.95
Merged-chrX-112320471-2	chrX	112320373	112320573	+	827.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313734, intron 1 of 6)	PB1D10|SINE|Alu	9121.0	NM_026565	68117.0	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	11.31	14.84	18.83	13.27	6.55	10.66	6.64	10.04	6.1	3.51	8.54	2.82
Merged-chr5-101994503-2	chr5	101994399	101994599	+	827.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75422.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.88	11.32	16.54	3.62	2.45	7.53	3.65	3.2	18.69	23.1	19.09	6.89
Merged-chr6-106794630-2	chr6	106794529	106794729	+	827.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021449, intron 3 of 10)	intron (NM_021449, intron 3 of 10)	5458.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	5.25	7.8	20.54	8.45	19.23	12.23	19.6	15.98	21.44	11.05	30.65	9.4
Merged-chr2-38290482-3	chr2	38290376	38290576	+	827.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-3092.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	8.48	5.03	13.12	4.42	13.09	7.21	8.97	13.37	22.42	16.57	21.1	6.89
Merged-chr2-128067540-3	chr2	128067460	128067660	+	827.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-58478.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	22.61	11.57	10.27	3.22	11.45	27.28	9.3	4.82	30.88	29.12	28.14	21.62
Merged-chr11-11668525-3	chr11	11668420	11668620	+	827.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17405.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	11.71	9.31	8.56	23.33	9.41	9.72	12.62	14.83	14.95	10.04	20.6	10.65
Merged-chr8-36532828-3	chr8	36532736	36532936	+	827.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43645.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	4.44	11.07	11.41	9.25	10.23	14.74	29.9	16.46	7.28	12.05	18.09	5.64
Merged-chr4-126035543-3	chr4	126035438	126035638	+	827.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252651, intron 7 of 14)	intron (NM_001252651, intron 7 of 14)	10879.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	11.31	8.3	4.56	10.05	27.0	11.92	6.31	12.11	13.96	13.05	19.09	3.45
Merged-chr3-59208971-4	chr3	59208841	59209041	+	827.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	1941.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.65	10.56	1.14	8.04	9.82	14.11	4.32	6.7	6.88	12.55	3.01	13.47
Merged-chr19-21747578-3	chr19	21747479	21747679	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30761.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	11.71	8.8	7.42	15.28	5.32	11.92	11.63	14.61	17.7	11.05	16.58	8.14
Merged-chr11-120355222-3	chr11	120355149	120355349	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6285.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	8.48	12.07	7.42	8.45	11.05	11.29	8.97	9.11	14.75	10.04	8.54	10.65
Merged-chr8-61578984-3	chr8	61578874	61579074	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	12195.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.25	7.55	8.56	12.87	17.18	10.35	8.64	6.59	23.01	19.08	26.13	8.46
Merged-chr2-130733656-3	chr2	130733563	130733763	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-36144.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	8.08	2.01	18.83	12.07	11.05	6.59	6.31	11.36	16.52	11.05	18.09	11.28
Merged-chr5-137748731-5	chr5	137748672	137748872	+	827.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	2803.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	12.92	3.52	3.42	7.64	8.18	4.7	5.98	6.79	5.11	7.53	4.02	1.57
Merged-chr14-22020820-4	chr14	22020707	22020907	+	827.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 1 of 6)	intron (NM_028275, intron 1 of 6)	1095.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	8.48	7.04	7.99	6.44	6.95	5.02	6.64	7.23	7.08	10.04	9.04	6.58
Merged-chr5-90876285-2	chr5	90876196	90876396	+	827.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14949.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	4.85	1.76	2.85	5.63	9.0	11.29	4.65	2.97	19.08	8.54	3.52	1.57
Merged-chr10-7264988-2	chr10	7264884	7265084	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52747.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	8.08	6.79	15.97	13.67	17.59	16.93	29.56	34.77	0.2	0.0	1.0	1.57
Merged-chr13-75845388-3	chr13	75845287	75845487	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	5501.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	12.11	14.84	12.55	6.84	16.36	10.03	7.64	12.06	20.65	5.52	12.56	5.01
Merged-chr15-43363031-2	chr15	43362927	43363127	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80291.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	2.42	3.52	21.68	22.52	3.27	3.45	7.97	8.36	6.69	3.01	3.01	3.45
Merged-chr9-13774907-3	chr9	13774828	13775028	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024025, intron 1 of 15)	RodERV21-int|LTR|ERV1	25747.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	6.06	6.54	4.56	16.09	8.18	9.09	8.3	11.69	15.34	8.54	8.04	12.84
Merged-chr4-19850886-1	chr4	19850786	19850986	+	827.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	32159.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	4.02	2.28	13.67	8.18	7.21	1.33	10.23	4.52	5.02	8.04	7.83
Merged-chr7-29169477-2	chr7	29169388	29169588	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	-722.0	NM_001358852	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	6.86	5.28	9.7	2.82	4.5	2.2	2.99	2.75	11.01	11.55	4.52	11.28
Merged-chr10-82763582-2	chr10	82763457	82763657	+	827.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010914, intron 1 of 7)	CpG	584.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	11.71	10.06	2.85	4.02	10.23	10.98	9.63	10.07	17.31	13.05	9.04	8.77
Merged-chr5-118459193-2	chr5	118459084	118459284	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101535.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	9.29	9.06	7.99	12.87	9.82	21.64	12.29	12.06	11.6	6.03	9.04	4.39
Merged-chr16-91354377-2	chr16	91354266	91354466	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18417.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	13.33	14.59	17.11	14.08	22.5	15.37	11.96	15.2	16.72	12.05	28.64	10.02
Merged-chr10-7992788-3	chr10	7992687	7992887	+	827.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36664.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	11.31	18.61	7.42	8.45	24.55	49.54	11.96	20.07	24.19	13.05	15.07	5.64
Merged-chr8-25535575-3	chr8	25535484	25535684	+	827.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	16825.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	14.13	5.53	10.27	8.04	15.14	14.42	20.59	17.19	16.52	10.04	27.13	12.22
Merged-chr7-75681308-3	chr7	75681219	75681419	+	827.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-167019.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	12.11	10.56	14.83	6.84	10.64	8.15	8.3	12.2	20.26	3.51	13.06	2.19
Merged-chr18-82475129-3	chr18	82475064	82475264	+	827.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010777)	promoter-TSS (NM_010777)	41.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	6.86	4.53	17.11	10.05	13.5	6.9	5.31	16.91	10.03	14.06	28.14	11.9
Merged-chr3-15245118-3	chr3	15244992	15245192	+	827.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87210.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	13.73	8.55	3.42	12.87	6.55	5.64	9.63	10.93	11.01	6.53	4.02	16.92
Merged-chr6-87153130-2	chr6	87153039	87153239	+	827.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 17 of 17)	ORR1F|LTR|ERVL-MaLR	48393.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	6.46	6.04	9.13	6.44	7.36	7.21	9.97	10.79	13.37	6.53	7.54	10.34
Merged-chr17-87293334-2	chr17	87293214	87293414	+	827.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	10428.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.63	3.52	13.69	7.24	15.14	11.92	6.31	11.36	12.19	14.06	13.57	5.64
Merged-chr2-160598031-3	chr2	160597929	160598129	+	827.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47868.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	12.11	5.53	6.28	13.27	5.32	13.17	2.33	12.42	16.52	17.57	13.06	12.84
Merged-chr18-46357070-3	chr18	46356981	46357181	+	827.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45153.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	5.25	8.8	5.13	7.24	11.45	14.11	13.95	12.14	22.82	20.59	14.57	15.66
Merged-chr6-5411150-3	chr6	5411066	5411266	+	827.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20756.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	7.27	10.06	15.4	8.85	15.96	17.25	8.64	15.31	14.36	9.54	20.6	9.08
Merged-chr1-119498872-4	chr1	119498797	119498997	+	827.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	5885.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	8.48	15.59	3.42	8.04	15.14	9.41	17.61	10.96	6.69	15.57	11.05	6.58
Merged-chr15-59486309-3	chr15	59486202	59486402	+	827.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	112104.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	15.75	10.82	15.97	13.27	6.14	10.98	6.64	5.72	12.59	23.6	22.11	10.02
Merged-chr10-85185941-3	chr10	85185838	85186038	+	827.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-884.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	10.09	10.31	11.98	10.86	10.23	10.98	6.31	7.46	12.59	11.55	21.61	10.96
Merged-chr17-27777989-2	chr17	27777853	27778053	+	827.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033279, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	42589.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	6.06	2.77	1.14	2.41	5.73	7.84	2.99	6.98	10.03	8.54	8.04	7.52
Merged-chr4-124990485-1	chr4	124990385	124990585	+	827.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138683, intron 1 of 5)	intron (NM_138683, intron 1 of 5)	4055.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	2.02	8.05	5.13	2.82	4.09	9.72	7.97	9.2	4.33	7.03	7.03	4.39
Merged-chr16-94602782-1	chr16	94602682	94602882	+	827.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8637.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.27	2.26	7.99	8.85	8.59	5.64	6.98	9.7	2.95	2.01	10.55	7.52
Merged-chr1-182951502-2	chr1	182951408	182951608	+	827.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3280.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	14.94	9.81	10.27	8.45	16.36	4.08	9.3	11.38	4.33	4.02	6.03	5.33
Merged-chr16-21198756-2	chr16	21198638	21198838	+	827.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6057.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	11.71	10.56	18.83	6.03	2.45	3.14	1.33	5.66	9.83	18.08	15.07	6.27
Merged-chr17-45766647-3	chr17	45766553	45766753	+	827.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32147.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	9.29	4.78	27.95	10.86	8.59	2.82	16.28	15.0	20.65	16.07	13.57	16.29
Merged-chr1-92708419-3	chr1	92708317	92708517	+	827.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-59576.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	12.92	5.79	19.97	16.89	16.77	11.92	15.28	23.66	12.78	16.57	21.1	7.21
Merged-chr2-59616657-3	chr2	59616552	59616752	+	827.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4610.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	6.46	11.82	13.12	9.25	12.27	7.84	4.65	13.32	14.16	9.54	25.12	13.78
Merged-chr10-76346262-2	chr10	76346151	76346351	+	827.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-960.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	13.33	5.53	3.42	6.84	13.09	11.6	13.95	12.64	12.19	12.05	3.52	3.45
Merged-chr14-60912025-2	chr14	60911926	60912126	+	827.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125961.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.02	2.01	6.85	1.21	10.64	4.39	2.99	8.86	8.26	6.53	20.1	10.02
Merged-chr13-64439215-3	chr13	64439114	64439314	+	827.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_053180, exon 8 of 8)	3' UTR (NM_053180, exon 8 of 8)	6661.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	12.52	11.07	12.55	11.26	12.68	9.72	12.95	20.92	10.42	8.54	17.59	6.89
Merged-chr13-52574482-3	chr13	52574377	52574577	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1252.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	8.48	7.04	18.25	4.02	8.18	11.6	7.97	10.12	11.01	8.03	16.58	6.89
Merged-chr4-150882794-3	chr4	150882691	150882891	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	27130.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	9.69	11.57	15.4	12.47	11.05	19.44	6.31	9.73	18.49	13.56	27.13	9.71
Merged-chr3-8729133-3	chr3	8729022	8729222	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62084.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.67	7.29	18.83	7.24	29.86	18.19	16.61	28.23	14.36	5.02	15.07	14.41
Merged-chr3-115661239-3	chr3	115661132	115661332	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53823.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	10.9	5.53	15.4	13.27	13.5	11.6	9.97	9.25	23.01	20.59	26.63	13.16
Merged-chr19-36818934-1	chr19	36818834	36819034	+	827.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15298.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	10.5	6.29	7.99	5.63	6.95	7.84	10.63	14.16	5.51	2.01	5.02	10.96
Merged-chr14-44989238-3	chr14	44989028	44989228	+	827.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008964, exon 1 of 2)	exon (NM_008964, exon 1 of 2)	1017.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.44	8.8	12.55	6.84	2.45	5.96	4.98	5.02	4.92	12.55	9.55	1.57
Merged-chr4-115825447-3	chr4	115825340	115825540	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-2652.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	10.5	5.79	10.84	8.85	19.64	20.38	11.29	13.37	13.57	18.58	29.65	12.22
Merged-chr11-69118860-3	chr11	69118769	69118969	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1584.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	18.17	10.06	16.54	12.47	12.68	14.74	2.33	6.7	15.14	13.56	5.53	12.53
Merged-chr2-101830756-3	chr2	101830657	101830857	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	8223.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	17.36	23.64	17.68	8.04	8.18	12.23	6.98	4.79	14.16	14.06	9.55	7.21
Merged-chr2-155135278-3	chr2	155135182	155135382	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	RSINE1|SINE|B4	1801.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	12.52	5.03	9.13	14.08	13.09	12.86	13.29	16.85	9.05	7.03	11.56	17.86
Merged-chr14-14065014-2	chr14	14064905	14065105	+	827.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52514.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	3.63	8.8	4.56	3.22	6.55	18.81	8.97	22.37	12.19	8.03	6.53	8.46
Merged-chr3-27226964-2	chr3	27226863	27227063	+	827.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	43959.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.65	5.28	4.56	7.24	7.36	4.08	2.66	8.3	27.73	11.55	16.08	6.27
Merged-chr1-89643858-2	chr1	89643754	89643954	+	827.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	40038.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	8.08	8.05	3.99	3.22	9.82	7.84	8.3	8.33	11.41	12.55	3.52	3.76
Merged-chr9-48984581-2	chr9	48984482	48984682	+	827.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-803.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	11.71	16.6	7.42	11.66	11.86	33.24	11.29	14.86	9.05	8.03	10.05	9.4
Merged-chr6-90428565-3	chr6	90428537	90428737	+	827.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-157.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	5.65	6.79	9.13	7.64	3.27	11.92	3.32	7.65	3.15	2.51	7.03	5.64
Merged-chr1-155322365-3	chr1	155322262	155322462	+	827.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 7 of 14)	intron (NM_011273, intron 7 of 14)	95082.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.08	7.29	7.99	14.08	10.64	10.66	12.95	13.43	10.23	5.52	17.08	7.52
Merged-chr13-74004380-3	chr13	74004289	74004489	+	827.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-5030.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.23	10.31	14.26	17.7	7.77	8.78	8.97	14.92	14.75	1.51	13.57	7.21
Merged-chr7-29276932-1	chr7	29276832	29277032	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	5045.0	NM_001082548	20733.0	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	12.52	9.56	1.14	2.01	0.41	13.48	0.0	0.25	6.29	8.54	9.55	0.0
Merged-chr17-21422763-1	chr17	21422663	21422863	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-464.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	6.06	3.02	5.7	2.41	6.55	4.39	3.32	12.08	18.29	6.53	17.08	6.58
Merged-chr15-34342825-1	chr15	34342725	34342925	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	15047.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	2.42	3.27	11.98	2.82	5.32	9.41	6.98	10.49	2.36	0.0	4.02	0.0
Merged-chr15-99009001-1	chr15	99008901	99009101	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20890.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.8	10.64	12.86	11.29	8.86	7.67	19.08	11.56	7.83
Merged-chr4-129809600-1	chr4	129809500	129809700	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10879.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.62	1.51	1.71	0.4	1.23	0.63	1.0	0.9	4.13	7.53	5.53	6.58
Merged-chr1-144300840-3	chr1	144300734	144300934	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-51730.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	9.29	10.06	10.27	4.83	15.96	11.92	3.65	16.04	15.14	15.57	5.02	7.52
Merged-chr2-58130233-1	chr2	58130133	58130333	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_139200, exon 8 of 8)	3' UTR (NM_139200, exon 8 of 8)	29889.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	2.42	3.02	8.56	2.82	5.73	7.84	11.29	21.7	8.65	0.5	8.04	6.58
Merged-chr1-55086509-1	chr1	55086409	55086609	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356512, intron 2 of 11)	intron (NM_001356512, intron 2 of 11)	1423.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	7.27	5.79	6.85	1.21	5.32	10.03	9.97	7.18	5.7	2.51	3.01	3.13
Merged-chr2-129369424-1	chr2	129369324	129369524	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-478.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	10.09	5.03	2.28	1.21	3.27	5.02	0.0	0.0	12.59	27.62	4.52	2.19
Merged-chr10-53443124-1	chr10	53443024	53443224	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33242.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	4.44	2.52	1.14	7.64	9.41	5.33	6.31	10.93	8.85	2.51	11.05	7.21
Merged-chr9-89989030-1	chr9	89988930	89989130	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357743, intron 13 of 26)	intron (NM_001357743, intron 13 of 26)	-65237.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.44	3.52	6.85	8.45	3.68	10.66	4.32	10.91	9.24	2.01	2.51	3.45
Merged-chr3-79248267-1	chr3	79248167	79248367	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045502, exon 2 of 3)	non-coding (NR_045502, exon 2 of 3)	35348.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.81	2.01	1.14	4.02	6.95	2.2	2.99	8.07	2.56	4.02	5.02	0.63
Merged-chr10-39387220-1	chr10	39387120	39387320	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	17421.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.44	4.53	2.28	6.03	5.73	7.21	4.32	9.93	3.74	2.01	1.51	0.63
Merged-chr10-93366285-2	chr10	93366129	93366329	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30018.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	5.25	5.53	10.84	5.63	4.91	16.31	6.64	7.26	0.59	0.5	0.0	0.0
Merged-chr7-49497088-1	chr7	49496988	49497188	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 11 of 37)	intron (NM_175272, intron 11 of 37)	139747.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.4	2.77	0.0	5.63	0.82	4.39	7.97	5.83	3.74	0.5	4.52	2.19
Merged-chr5-99632950-3	chr5	99632838	99633038	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96122.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.04	11.07	8.56	2.41	11.45	7.53	11.29	4.09	18.1	10.54	9.55	9.4
Merged-chr10-75059494-1	chr10	75059394	75059594	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1402.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	3.63	3.77	5.7	4.42	7.36	10.98	7.64	14.64	9.44	6.53	11.56	4.39
Merged-chr6-97803852-3	chr6	97803755	97803955	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3203.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	8.48	18.11	6.28	14.48	27.0	21.64	13.95	9.45	20.06	31.13	10.55	11.28
Merged-chr5-140701885-1	chr5	140701785	140701985	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347517, intron 1 of 22)	intron (NM_001347517, intron 1 of 22)	493.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	10.09	12.83	14.26	6.84	9.0	14.42	8.97	7.65	14.55	22.59	14.07	6.58
Merged-chr2-103058406-1	chr2	103058306	103058506	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	15107.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.02	2.52	0.0	4.83	9.82	5.64	7.31	9.17	10.03	6.03	4.52	3.76
Merged-chr3-30727406-1	chr3	30727306	30727506	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-18887.0	NR_028060	75953.0	Mm.308084	NM_029489	ENSMUSG00000051860	Samd7	4930597A01Rik	sterile alpha motif domain containing 7	protein-coding	13.73	7.29	18.25	22.12	0.0	0.31	0.66	0.11	1.97	0.0	0.0	0.63
Merged-chr2-10010422-1	chr2	10010322	10010522	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	38187.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	5.65	12.32	6.85	5.63	11.05	6.9	8.3	8.21	5.31	5.02	11.56	1.57
Merged-chr4-6388700-2	chr4	6388599	6388799	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23019.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	9.29	2.77	5.13	0.0	5.32	6.27	7.97	7.77	17.11	15.57	12.06	8.46
Merged-chr6-33962798-1	chr6	33962698	33962898	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-66650.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.02	1.51	10.27	10.46	2.05	6.59	2.66	8.58	6.1	7.03	7.03	5.95
Merged-chr16-93005681-3	chr16	93005564	93005764	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179590.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	12.52	3.77	14.26	11.66	7.77	9.72	6.98	10.12	12.78	3.51	14.57	5.01
Merged-chr14-22814850-1	chr14	22814750	22814950	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-272052.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.81	2.26	5.7	4.02	7.77	4.08	4.98	13.77	5.7	3.51	10.55	1.57
Merged-chr7-48938406-1	chr7	48938306	48938506	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20667.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.63	3.77	2.85	0.0	13.91	11.29	1.66	7.29	2.75	6.03	9.55	4.7
Merged-chr18-34181347-1	chr18	34181247	34181447	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39637.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.81	1.26	3.99	0.0	1.64	0.63	2.66	2.27	17.7	12.05	21.61	8.46
Merged-chr8-71485958-3	chr8	71485852	71486052	+	826.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164679, exon 1 of 17)	5' UTR (NM_001164679, exon 1 of 17)	115.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	14.54	7.55	5.13	14.48	9.82	16.93	10.3	11.75	13.57	10.04	14.07	5.95
Merged-chr16-91399131-3	chr16	91399029	91399229	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7106.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	9.69	6.04	7.42	4.02	18.41	17.87	7.64	12.17	17.11	18.08	25.12	16.29
Merged-chr1-87960250-3	chr1	87960151	87960351	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033291, intron 19 of 27)	intron (NM_001033291, intron 19 of 27)	48300.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	8.08	11.32	10.27	12.47	11.05	12.86	8.97	9.73	15.34	11.55	13.06	10.34
Merged-chr3-40746460-3	chr3	40746361	40746561	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	848.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	1.62	8.05	14.83	8.45	11.05	12.54	8.3	15.0	11.21	5.52	17.59	10.34
Merged-chr4-12419450-3	chr4	12419352	12419552	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247437.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	8.88	10.82	12.55	19.31	11.86	14.42	17.61	20.44	11.8	8.54	14.07	5.95
Merged-chr4-3651727-2	chr4	3651631	3651831	+	826.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4775.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.81	1.51	7.99	10.46	15.96	8.47	14.62	14.02	8.06	10.54	24.12	15.04
Merged-chr4-89458769-3	chr4	89458662	89458862	+	826.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147730.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	8.88	4.28	9.13	12.87	13.91	14.11	13.29	31.49	14.95	8.03	21.61	10.34
Merged-chr13-81371258-3	chr13	81371157	81371357	+	826.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	Lx6|LINE|L1	261887.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	8.48	7.29	15.4	14.08	13.91	11.92	15.28	19.43	17.51	21.59	14.07	8.14
Merged-chr19-21111992-3	chr19	21111784	21111984	+	826.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7174.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.02	3.27	0.57	2.82	2.86	2.2	1.66	1.68	2.36	4.52	1.0	5.01
Merged-chr4-109214227-2	chr4	109214122	109214322	+	826.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4191.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	10.5	4.78	3.42	8.85	19.64	14.11	13.62	20.52	7.87	6.53	18.09	0.31
Merged-chr11-32881779-2	chr11	32881669	32881869	+	826.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57175.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	9.29	7.29	18.83	16.89	9.41	5.96	4.98	16.54	0.59	0.5	0.5	0.31
Merged-chr12-5375797-2	chr12	5375681	5375881	+	826.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015579)	promoter-TSS (NR_015579)	-99.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	2.42	9.56	1.14	4.02	2.05	3.76	3.99	5.33	12.19	7.53	13.57	13.47
Merged-chr4-137724309-3	chr4	137724201	137724401	+	826.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138592)	promoter-TSS (NR_138592)	-160.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	4.44	9.06	7.99	8.04	31.91	10.98	9.97	16.51	24.39	12.55	8.54	15.98
Merged-chr11-8701015-1	chr11	8700915	8701115	+	826.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36480.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.62	4.02	4.56	1.61	1.64	3.14	3.99	4.57	13.77	11.05	23.11	15.98
Merged-chr1-172463528-3	chr1	172463427	172463627	+	826.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11833.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	9.69	6.04	9.7	10.86	12.68	7.21	19.6	17.22	21.83	25.11	27.13	22.24
Merged-chrX-47925038-3	chrX	47924942	47925142	+	826.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177215, intron 4 of 23)	intron (NM_177215, intron 4 of 23)	12586.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	12.11	9.81	14.83	20.11	14.73	20.38	18.27	28.35	17.51	10.04	16.58	7.52
Merged-chr8-70635620-3	chr8	70635508	70635708	+	826.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3152.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.86	5.03	6.85	9.65	7.77	9.72	8.97	6.2	16.13	5.52	9.04	4.07
Merged-chr17-67260189-3	chr17	67260077	67260277	+	826.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	94282.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.21	2.77	8.56	10.05	13.91	5.96	10.63	11.19	20.26	13.05	27.13	18.8
Merged-chr2-103579005-3	chr2	103578901	103579101	+	826.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	L2b|LINE|L2	12691.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	9.69	8.3	8.56	13.67	13.5	8.15	9.3	13.96	10.42	10.04	39.7	18.48
Merged-chr5-98055004-1	chr5	98054904	98055104	+	826.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24042.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	1.62	0.0	0.0	1.61	2.86	2.51	0.33	2.38	25.96	13.05	20.6	8.77
Merged-chr2-129895516-2	chr2	129895412	129895612	+	826.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94053.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	2.83	6.04	8.56	4.42	24.14	21.64	16.94	15.08	9.64	9.04	8.04	8.14
Merged-chr16-35922517-3	chr16	35922426	35922626	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-15944.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	8.88	5.03	10.27	6.84	15.55	10.66	9.63	10.21	15.93	10.54	16.58	10.34
Merged-chr13-47277464-1	chr13	47277364	47277564	+	826.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83461.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.65	4.78	0.57	4.42	14.32	11.6	2.66	5.5	2.75	4.52	10.05	5.95
Merged-chr4-55488858-3	chr4	55488781	55488981	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B|LTR|ERVL	43594.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.85	4.78	3.42	13.67	17.59	11.92	13.95	17.83	10.82	12.55	14.57	10.34
Merged-chr6-97819163-3	chr6	97819064	97819264	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	12106.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	12.92	13.58	14.83	4.42	19.23	25.71	16.61	19.77	11.8	4.02	9.55	5.33
Merged-chr1-58857060-3	chr1	58856969	58857169	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54567.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	4.44	14.34	3.42	10.86	15.14	10.03	8.3	4.77	21.24	11.55	13.57	6.89
Merged-chr8-108715379-1	chr8	108715279	108715479	+	826.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	CpG	735.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.44	8.8	2.85	8.85	8.18	9.41	7.97	9.84	6.49	9.04	12.56	7.21
Merged-chr10-127534476-3	chr10	127534364	127534564	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	95.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	8.88	14.34	5.13	8.04	2.05	4.7	4.32	8.61	9.64	9.54	2.51	5.01
Merged-chr5-114689680-5	chr5	114689563	114689763	+	826.646667	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	1272.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	4.04	1.76	1.14	10.86	2.45	4.08	6.64	2.61	8.06	4.02	4.52	4.39
Merged-chr1-191110595-2	chr1	191110509	191110709	+	826.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12195.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.85	12.32	18.83	8.04	8.59	6.27	7.31	7.43	7.47	2.01	3.01	3.76
Merged-chr18-88770680-3	chr18	88770573	88770773	+	826.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123534.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	10.9	6.04	7.99	15.28	6.55	11.92	1.99	11.61	14.75	7.53	17.59	9.71
Merged-chrUn_JH584304-929-1	chrUn_JH584304	829	1029	+	826.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	58760.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.6	8.54	11.56	11.28
Merged-chr12-81910676-1	chr12	81910576	81910776	+	826.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	50646.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	4.44	3.02	8.56	6.03	11.05	7.84	10.3	11.19	3.74	3.01	14.57	5.01
Merged-chr3-95667655-2	chr3	95667563	95667763	+	826.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	8942.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	10.5	15.85	13.69	7.24	22.09	17.56	8.3	12.98	8.26	11.55	9.55	4.7
Merged-chr13-37356226-3	chr13	37356122	37356322	+	826.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10877.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	12.11	5.28	27.95	6.44	13.09	6.59	6.64	14.36	12.19	8.54	26.63	14.1
Merged-chr10-128455488-3	chr10	128455389	128455589	+	826.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3191.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	10.09	5.03	8.56	10.86	9.41	13.48	3.32	12.5	15.93	24.6	17.59	10.65
Merged-chr16-43409330-3	chr16	43409235	43409435	+	826.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	10861.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	10.5	8.3	15.4	19.71	13.09	10.03	13.29	26.02	11.41	12.05	13.57	9.4
Merged-chr9-75553895-3	chr9	75553795	75553995	+	826.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	B1F|SINE|Alu	5762.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	6.86	10.56	11.41	10.05	8.59	11.29	13.95	11.55	12.78	22.09	34.67	14.72
Merged-chr8-126803811-3	chr8	126803696	126803896	+	826.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45224.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	8.48	13.08	13.69	6.03	7.77	18.5	5.65	9.9	13.18	13.56	17.59	9.71
Merged-chr4-72437583-1	chr4	72437483	72437683	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	236339.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	2.42	4.02	3.42	10.05	7.36	8.47	2.99	8.75	7.87	5.02	7.03	4.7
Merged-chr15-84985927-3	chr15	84985773	84985973	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	2098.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.06	2.77	10.84	5.63	8.18	15.05	8.64	17.44	8.26	11.05	14.57	5.33
Merged-chr9-106261300-2	chr9	106261190	106261390	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13336.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	2.02	8.8	9.7	3.22	2.45	13.48	1.99	2.13	32.85	37.66	38.69	25.37
Merged-chr1-36253008-3	chr1	36252911	36253111	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8709.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	6.06	10.06	15.4	5.23	4.91	12.54	3.32	5.75	13.37	20.59	21.1	9.08
Merged-chr12-30912244-2	chr12	30912149	30912349	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021330)	promoter-TSS (NM_021330)	580.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	12.52	10.31	5.7	8.45	11.86	7.53	7.31	9.93	10.82	7.53	13.57	4.39
Merged-chr7-137420742-3	chr7	137420639	137420839	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9983.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	12.92	1.51	15.97	4.83	9.82	6.59	2.99	14.83	15.54	8.03	17.08	10.34
Merged-chr4-3624155-2	chr4	3624044	3624244	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32362.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.85	2.01	10.27	2.82	1.23	6.59	4.32	6.14	14.36	8.54	27.13	4.7
Merged-chr16-84713262-2	chr16	84713156	84713356	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029565)	promoter-TSS (NR_029565)	233.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.81	20.63	11.41	2.82	1.23	6.27	1.99	1.4	14.55	9.04	13.06	2.82
Merged-chr13-83715209-3	chr13	83715076	83715276	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6205.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	10.9	5.79	5.13	4.02	10.23	12.23	13.95	13.71	10.62	6.53	10.55	10.96
Merged-chr4-46041905-1	chr4	46041805	46042005	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021883, intron 1 of 9)	intron (NM_021883, intron 1 of 9)	2683.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.81	0.0	2.28	0.0	3.27	7.84	6.31	7.43	2.36	0.0	1.0	0.94
Merged-chr8-88639078-1	chr8	88638978	88639178	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2950.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	4.04	0.75	4.56	5.23	5.73	10.35	12.95	8.16	5.9	4.02	1.51	1.88
Merged-chr6-99544120-1	chr6	99544020	99544220	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23127.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.23	5.03	7.99	4.42	4.09	7.53	6.31	9.31	7.87	1.0	15.07	6.58
Merged-chr17-43055510-1	chr17	43055410	43055610	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	B1_Mus2|SINE|Alu	38955.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.63	4.02	7.42	4.42	9.0	5.64	6.64	9.39	0.59	0.0	1.0	0.63
Merged-chr3-59202402-3	chr3	59202249	59202449	+	826.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-7245.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	2.83	5.03	1.71	9.65	2.86	5.96	3.32	5.64	5.11	5.52	2.51	3.45
Merged-chr12-85487934-4	chr12	85487816	85488016	+	826.424988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14026.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	19.38	5.53	5.13	6.03	8.18	10.66	1.99	4.29	17.7	19.58	15.58	11.28
Merged-chr10-100741830-3	chr10	100741723	100741923	+	826.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-188.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	10.9	13.83	6.28	7.24	10.23	30.1	17.27	11.33	25.57	23.1	18.59	12.84
Merged-chr10-20915823-3	chr10	20915743	20915943	+	826.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36704.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.42	10.82	10.27	10.46	5.32	12.54	11.29	13.68	14.95	14.56	19.6	14.41
Merged-chr11-79210140-2	chr11	79210067	79210267	+	826.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32857.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.44	4.02	6.85	3.62	8.59	10.03	1.99	5.3	13.57	6.53	8.04	5.33
Merged-chr10-8885287-2	chr10	8885178	8885378	+	826.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	792.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.48	11.82	11.98	6.84	3.68	9.72	5.65	5.97	8.46	17.57	8.04	7.52
Merged-chr18-65678536-1	chr18	65678436	65678636	+	826.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-19732.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.23	4.28	1.14	5.63	6.95	1.57	6.64	8.07	3.93	5.02	4.02	4.39
Merged-chr17-23538940-3	chr17	23538820	23539020	+	826.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11879.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	10.09	11.82	7.42	1.21	8.18	11.92	7.31	4.68	10.23	9.54	6.03	3.13
Merged-chr6-133960868-3	chr6	133960774	133960974	+	826.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74826.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.5	8.05	18.25	6.03	9.82	9.41	10.96	14.19	17.31	5.02	17.59	8.46
Merged-chr6-50245216-1	chr6	50245116	50245316	+	826.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	16553.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.85	3.02	0.0	7.24	3.27	9.72	7.64	9.31	0.98	4.52	3.01	4.7
Merged-chr6-97107031-3	chr6	97106942	97107142	+	826.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41841.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	6.46	12.58	7.42	17.7	15.14	17.25	4.98	21.95	15.14	6.03	18.09	3.76
Merged-chr13-34345136-5	chr13	34344990	34345190	+	826.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	92.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	14.13	14.59	8.56	14.08	11.86	9.72	11.29	12.48	10.82	11.05	8.04	6.27
Merged-chr5-96794432-3	chr5	96794329	96794529	+	826.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 1 of 12)	intron (NM_013470, intron 1 of 12)	1044.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	21.8	6.54	19.4	10.86	9.82	16.62	17.94	19.93	13.37	6.03	11.56	4.39
Merged-chr2-51372934-3	chr2	51372840	51373040	+	826.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64960.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	4.85	3.02	9.7	14.48	35.18	27.91	24.91	35.52	20.85	21.09	29.14	8.14
Merged-chrX-102187346-1	chrX	102187246	102187446	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009094, intron 4 of 6)	intron (NM_009094, intron 4 of 6)	2045.0	NM_009094	20102.0	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	1.62	4.78	9.7	6.03	7.77	14.11	6.98	7.32	8.26	6.03	7.03	5.01
Merged-chr8-26917784-2	chr8	26917670	26917870	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-59566.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	1.62	7.8	1.14	4.02	11.86	9.72	5.31	13.12	17.51	8.54	7.54	10.34
Merged-chr1-138955673-1	chr1	138955573	138955773	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8036.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	5.65	3.77	9.7	4.02	7.36	10.98	6.31	11.38	5.31	7.53	5.53	5.01
Merged-chr1-64717633-2	chr1	64717520	64717720	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097644, intron 7 of 9)	intron (NM_001097644, intron 7 of 9)	20130.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	8.88	5.53	5.7	7.24	13.09	13.17	4.32	14.38	8.85	12.55	9.04	11.59
Merged-chr11-106033573-1	chr11	106033473	106033673	+	826.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037712, intron 12 of 12)	intron (NM_001037712, intron 12 of 12)	-3299.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	1.01	3.42	0.8	0.0	2.2	1.99	0.0	8.65	25.61	12.56	13.78
Merged-chr12-84004734-3	chr12	84004615	84004815	+	826.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-4787.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	20.59	8.8	14.26	6.44	14.32	8.78	10.96	18.84	18.49	17.57	11.56	10.96
Merged-chr11-117121431-3	chr11	117121327	117121527	+	826.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	6255.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	11.31	6.79	12.55	10.86	13.91	12.54	10.3	14.89	12.39	13.56	16.58	10.02
Merged-chr4-155683874-3	chr4	155683772	155683972	+	826.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10470.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	10.9	20.88	17.68	13.27	36.82	50.49	31.22	36.34	11.21	17.57	10.05	4.39
Merged-chr2-158137989-3	chr2	158137915	158138115	+	826.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	8377.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.23	13.08	14.83	4.83	9.0	13.17	7.97	6.42	37.17	15.06	29.14	16.92
Merged-chr5-144935425-3	chr5	144935312	144935512	+	826.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	30418.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	18.57	12.32	13.69	10.05	7.77	17.25	6.31	7.96	15.14	13.05	13.57	9.4
Merged-chr5-148708216-3	chr5	148708121	148708321	+	826.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-33619.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	12.52	7.29	3.99	13.27	9.0	6.9	11.63	13.21	49.96	50.71	58.29	24.12
Merged-chr3-57075291-1	chr3	57075191	57075391	+	826.166687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	226697.0	NM_008536	17112.0	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	9.69	11.57	17.68	17.7	0.0	0.0	0.66	0.84	0.0	0.0	0.5	0.0
Merged-chr8-14651632-2	chr8	14651509	14651709	+	826.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-236927.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	1.62	2.52	2.28	0.0	3.68	1.88	6.31	6.73	20.46	17.07	14.07	15.04
Merged-chr16-38132626-5	chr16	38132567	38132767	+	826.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-43407.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	4.44	12.58	9.13	3.62	9.0	15.37	3.65	8.33	11.6	21.59	11.05	9.71
Merged-chr4-155488944-3	chr4	155488835	155489035	+	826.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2426.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	20.19	7.04	5.7	5.63	15.14	38.88	14.95	19.65	17.9	33.64	17.59	7.52
Merged-chr12-102246071-2	chr12	102245968	102246168	+	826.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-37006.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	8.88	2.26	5.7	5.63	13.5	31.67	11.63	16.51	9.44	13.56	14.07	8.14
Merged-chr5-121996940-3	chr5	121996854	121997054	+	826.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	L1MC4a|LINE|L1	50871.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	6.86	9.56	13.69	19.31	23.32	30.73	19.93	20.89	10.42	13.56	12.56	16.92
Merged-chr11-75073159-3	chr11	75073058	75073258	+	826.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	RSINE1|SINE|B4	-7167.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	10.5	13.08	14.83	4.42	11.05	18.19	10.3	3.36	22.03	7.53	16.58	3.13
Merged-chr10-77271074-3	chr10	77270976	77271176	+	826.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11776.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	14.13	9.81	11.98	14.48	15.96	10.03	12.62	16.43	18.69	12.05	31.15	15.04
Merged-chr6-146209168-3	chr6	146209080	146209280	+	826.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275058.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	11.71	6.79	7.42	18.5	6.55	13.8	13.95	21.87	8.26	4.02	15.07	9.4
Merged-chr13-37561064-3	chr13	37560969	37561169	+	826.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215724.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	10.5	7.04	9.7	8.85	7.36	9.72	8.64	18.28	17.7	14.06	8.04	9.71
Merged-chr10-99269451-1	chr10	99269351	99269551	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6220.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.27	13.58	15.97	14.88	9.0	12.23	1.99	4.23	2.75	7.53	2.01	3.76
Merged-chr14-25313025-1	chr14	25312925	25313125	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-146160.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.02	2.01	0.57	2.82	0.82	5.02	2.99	8.36	1.18	0.5	5.53	1.57
Merged-chr4-120935972-1	chr4	120935872	120936072	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005788, intron 3 of 5)	intron (NM_001005788, intron 3 of 5)	-10967.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	7.67	2.01	8.56	3.22	9.82	9.09	8.3	13.71	1.38	0.5	3.52	3.76
Merged-chr14-62329717-1	chr14	62329617	62329817	+	826.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2351.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.0	9.06	1.14	0.8	7.36	4.7	3.32	5.94	14.55	4.02	8.54	6.58
Merged-chr11-34048192-1	chr11	34048092	34048292	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	1264.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.27	5.03	2.28	3.22	1.64	18.5	8.97	1.82	4.33	12.55	8.04	2.82
Merged-chr19-11820008-3	chr19	11819916	11820116	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	-613.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	15.75	11.07	4.56	15.28	8.18	17.56	7.64	4.51	19.87	19.08	17.59	5.95
Merged-chr10-94336310-1	chr10	94336210	94336410	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	24361.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.85	6.04	2.85	1.21	9.0	10.98	6.98	8.3	3.15	2.51	6.53	1.88
Merged-chr3-86103909-1	chr3	86103809	86104009	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082414, intron 4 of 14)	RLTR20A4|LTR|ERVK	19475.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	0.0	0.25	0.0	0.0	2.86	4.08	6.31	2.02	2.16	0.0	3.01	3.76
Merged-chr3-31408999-1	chr3	31408899	31409099	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98680.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.4	0.0	2.28	3.22	2.45	1.25	5.31	11.72	1.57	5.52	7.54	2.51
Merged-chr8-119843607-1	chr8	119843507	119843707	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3028.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.44	5.53	3.42	8.04	15.96	5.64	7.31	9.08	9.24	3.51	8.54	2.19
Merged-chr5-115160930-1	chr5	115160830	115161030	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2754.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	4.04	2.77	7.99	3.62	4.91	3.14	9.63	9.59	4.72	9.54	5.53	4.7
Merged-chr14-51250508-1	chr14	51250408	51250608	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5604.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	9.69	6.04	6.85	17.29	9.82	5.64	7.64	13.09	3.74	1.0	4.52	1.88
Merged-chr10-39442212-1	chr10	39442112	39442312	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	L2b|LINE|L2	72413.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.85	2.26	10.84	3.62	2.05	6.9	6.31	13.82	5.31	0.0	4.02	2.82
Merged-chr13-24036579-1	chr13	24036479	24036679	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001311122, exon 33 of 38)	exon (NM_001311122, exon 33 of 38)	-45365.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	1.21	2.26	1.14	4.02	3.27	5.96	2.99	1.15	2.56	0.5	0.5	2.51
Merged-chr4-138250224-1	chr4	138250124	138250324	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001099631)	promoter-TSS (NM_001099631)	-187.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	4.85	4.02	3.42	2.41	11.86	5.33	3.99	7.04	6.69	5.52	4.52	3.45
Merged-chr5-45384481-1	chr5	45384381	45384581	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131933, intron 1 of 5)	RMER6B|LTR|ERVK	39919.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	5.25	3.02	1.71	0.4	4.91	12.54	4.32	4.79	0.0	1.0	0.5	1.25
Merged-chr13-55985624-1	chr13	55985524	55985724	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	149926.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.4	2.01	1.14	2.01	2.45	4.39	9.3	6.93	4.33	1.51	4.02	1.88
Merged-chr5-36557752-1	chr5	36557652	36557852	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	24645.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.85	4.78	6.28	6.44	10.64	5.96	6.98	10.23	3.74	3.51	1.0	0.31
Merged-chr7-127215482-3	chr7	127215389	127215589	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017461, intron 8 of 10)	intron (NM_017461, intron 8 of 10)	2956.0	NM_017461	54204.0	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	11.31	8.55	9.13	3.22	10.23	15.37	2.99	10.49	12.98	9.04	10.55	10.65
Merged-chr7-100943489-3	chr7	100943376	100943576	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	LTR108c_Mam|LTR|ERVL	-11315.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	12.52	10.31	5.7	9.25	7.36	13.17	5.98	13.91	15.54	25.61	17.08	7.52
Merged-chr15-91186507-3	chr15	91186466	91186666	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358967, intron 2 of 9)	intron (NM_001358967, intron 2 of 9)	5441.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	1.62	5.28	5.13	11.66	9.41	8.47	12.29	17.38	6.49	11.05	7.54	3.76
Merged-chr4-109204560-1	chr4	109204460	109204660	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.85	1.51	4.56	3.22	6.95	10.03	4.32	11.72	7.47	5.02	6.53	9.08
Merged-chr6-120085243-3	chr6	120085141	120085341	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8139.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	12.11	4.02	14.26	10.05	20.05	14.42	7.64	22.07	28.72	12.55	14.57	11.28
Merged-chr15-37787641-2	chr15	37787537	37787737	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359844, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4363.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	4.04	3.77	8.56	5.23	15.14	4.39	7.97	9.79	11.21	4.52	9.04	9.71
Merged-chr17-7420350-1	chr17	7420250	7420450	+	826.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35045.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	2.83	0.5	6.85	4.83	4.91	4.08	3.99	2.3	11.8	8.54	15.07	5.64
Merged-chr8-108895183-1	chr8	108895083	108895283	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-41677.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.04	3.02	2.85	0.0	8.18	6.9	2.33	8.69	4.92	3.01	3.01	0.63
Merged-chr1-7394266-3	chr1	7394162	7394362	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	305342.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.08	6.29	9.13	6.03	5.73	7.53	5.31	7.88	10.23	9.54	20.1	5.33
Merged-chr3-32400101-3	chr3	32399974	32400174	+	825.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34409.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	23.42	6.04	10.27	8.45	5.73	19.13	7.31	13.54	14.95	10.04	15.07	8.46
Merged-chr7-120901865-3	chr7	120901763	120901963	+	825.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267710, intron 17 of 17)	ORR1E|LTR|ERVL-MaLR	-15881.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	9.29	9.56	13.12	10.46	10.64	7.21	13.29	20.8	17.7	12.05	42.21	12.22
Merged-chr13-31506997-2	chr13	31506896	31507096	+	825.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51174.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	8.08	10.82	4.56	1.21	10.23	25.09	12.95	9.59	5.31	6.53	5.53	4.7
Merged-chrX-11665840-3	chrX	11665740	11665940	+	825.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	338018.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	17.36	19.37	18.25	6.44	11.45	41.08	7.31	3.5	25.77	8.03	23.11	4.07
Merged-chr7-97383658-3	chr7	97383576	97383776	+	825.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199035, intron 7 of 12)	intron (NM_199035, intron 7 of 12)	12059.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.23	14.84	19.97	6.03	9.41	11.6	10.96	6.84	20.26	27.11	9.04	9.4
Merged-chr17-88545467-3	chr17	88545394	88545594	+	825.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 3 of 21)	intron (NM_028658, intron 3 of 21)	15370.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.46	4.28	18.25	12.87	15.96	5.96	13.29	15.59	9.64	10.04	18.09	11.28
Merged-chr3-52391262-2	chr3	52391144	52391344	+	825.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122907.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	7.27	8.3	6.85	3.22	13.5	14.74	6.31	5.47	12.78	12.05	4.52	3.76
Merged-chr19-23142682-5	chr19	23142627	23142827	+	825.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1501.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.25	3.02	1.71	0.0	6.95	6.9	8.64	5.41	5.7	4.02	6.53	8.77
Merged-chr11-86602360-3	chr11	86602252	86602452	+	825.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-18194.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	6.06	9.81	16.54	12.07	16.36	20.38	16.61	17.3	21.44	14.56	21.61	8.14
Merged-chr3-10297400-2	chr3	10297349	10297549	+	825.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	3734.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	2.42	4.28	2.85	4.02	4.5	4.39	5.31	9.25	5.11	4.52	7.54	5.01
Merged-chr3-152259652-3	chr3	152259548	152259748	+	825.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	6147.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	16.96	12.58	9.7	9.25	18.0	22.89	5.98	12.56	10.23	11.05	12.56	2.82
Merged-chr11-111159500-3	chr11	111159412	111159612	+	825.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93348.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.85	10.82	30.8	20.11	14.73	8.78	3.99	11.41	25.77	22.09	11.05	10.02
Merged-chr10-40069464-1	chr10	40069364	40069564	+	825.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-44196.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.81	8.3	7.99	8.45	15.14	1.25	9.3	8.78	6.88	1.0	4.02	4.07
Merged-chr10-21611230-3	chr10	21611133	21611333	+	825.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	18088.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	19.79	9.56	18.25	11.26	9.82	19.13	15.28	21.98	13.96	15.57	9.55	9.08
Merged-chr17-65853883-3	chr17	65853786	65853986	+	825.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198949, intron 7 of 9)	intron (NM_001198949, intron 7 of 9)	31037.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	16.96	16.1	10.27	17.29	9.82	12.86	11.63	21.76	10.62	9.04	15.58	6.89
Merged-chr6-72109727-3	chr6	72109628	72109828	+	825.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12120.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	14.54	9.81	11.41	8.85	20.05	14.42	8.64	14.83	14.36	7.03	10.05	9.71
Merged-chr14-25745882-3	chr14	25745765	25745965	+	825.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	22991.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	8.08	14.09	6.85	14.48	7.77	16.31	12.62	14.94	3.74	7.53	8.54	8.77
Merged-chr18-39138023-2	chr18	39137926	39138126	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144881.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	19.79	4.78	4.56	6.84	12.68	10.66	25.24	15.53	10.82	9.54	10.55	3.76
Merged-chr3-135699750-2	chr3	135699682	135699882	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8235.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	8.08	4.28	15.4	8.04	6.55	0.94	5.31	4.65	17.11	13.56	14.07	5.33
Merged-chr3-96747038-2	chr3	96746920	96747120	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	19409.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	3.23	7.55	7.42	2.82	11.86	5.02	1.99	10.23	7.67	4.52	9.04	7.21
Merged-chr5-90731659-1	chr5	90731559	90731759	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27639.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.81	4.53	9.13	9.25	9.82	7.21	14.62	27.93	1.57	1.51	4.52	1.25
Merged-chr2-145161273-2	chr2	145161180	145161380	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6495.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	4.44	2.52	2.28	7.64	6.14	7.21	2.66	6.28	11.6	5.02	7.54	9.71
Merged-chr4-128670780-3	chr4	128670695	128670895	+	825.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	16093.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	10.09	5.53	8.56	11.26	8.59	16.62	7.31	27.28	16.52	13.05	8.54	10.34
Merged-chr7-99130227-3	chr7	99130132	99130332	+	825.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	10912.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.08	17.1	19.4	1.61	13.5	23.2	5.31	1.99	29.7	19.08	25.63	10.34
Merged-chrX-108833721-3	chrX	108833658	108833858	+	825.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015493)	promoter-TSS (NR_015493)	597.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	7.67	8.3	4.56	12.47	3.27	2.51	5.31	9.22	10.03	8.03	7.54	5.95
Merged-chr3-27691622-3	chr3	27691537	27691737	+	825.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18815.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.86	5.79	3.42	5.23	17.59	19.44	9.63	11.41	12.0	18.08	27.13	12.53
Merged-chr3-144617940-2	chr3	144617853	144618053	+	825.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47526.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	2.42	6.04	6.28	8.45	9.0	11.29	11.29	9.14	10.82	3.51	4.02	7.21
Merged-chr14-120398449-3	chr14	120398345	120398545	+	825.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-80016.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	11.71	7.29	8.56	5.63	10.64	14.74	11.63	9.5	13.96	8.03	15.07	7.83
Merged-chr4-53198513-2	chr4	53198425	53198625	+	825.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-38630.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.46	4.02	2.28	7.64	14.73	7.84	12.29	6.25	18.29	20.59	15.07	9.08
Merged-chr12-10068200-1	chr12	10068100	10068300	+	825.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-301771.0	NM_027588	70881.0	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding	0.81	0.75	0.0	0.8	10.23	9.72	9.63	9.42	1.97	3.01	5.02	2.51
Merged-chr19-46135456-3	chr19	46135344	46135544	+	825.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008852)	TTS (NM_008852)	3545.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	10.5	7.29	8.56	2.01	11.86	11.29	2.33	5.02	17.31	8.03	11.56	4.7
Merged-chr1-4870709-3	chr1	4870625	4870825	+	825.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159750, intron 2 of 9)	MTD|LTR|ERVL-MaLR	12397.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	2.42	9.56	17.68	8.04	6.14	6.9	3.65	9.62	14.16	8.54	15.07	10.34
Merged-chr9-60187135-1	chr9	60187035	60187235	+	825.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-45915.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	4.44	4.53	7.99	12.07	9.82	0.63	11.29	16.74	2.75	2.51	3.01	3.45
Merged-chr12-4210207-1	chr12	4210107	4210307	+	825.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138305, exon 17 of 21)	exon (NM_138305, exon 17 of 21)	23758.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	3.63	1.26	3.99	1.61	9.82	7.84	1.33	9.14	3.93	2.51	4.52	4.07
Merged-chr8-22124438-2	chr8	22124342	22124542	+	825.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	625.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	11.71	7.29	7.42	11.26	15.14	14.74	8.64	10.51	4.52	13.05	5.53	3.76
Merged-chr18-53232603-2	chr18	53232532	53232732	+	825.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-13030.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.23	1.26	3.42	10.46	4.91	2.51	5.98	11.21	10.82	5.02	13.06	7.52
Merged-chr16-34000846-3	chr16	34000733	34000933	+	825.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-33795.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	12.52	14.34	10.84	6.44	11.45	18.5	4.32	5.97	16.92	13.05	15.07	5.95
Merged-chr2-166684236-4	chr2	166684101	166684301	+	825.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	29631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	10.5	6.54	4.56	2.41	13.5	17.56	9.97	12.84	15.14	15.06	11.05	5.95
Merged-chr7-139984658-2	chr7	139984564	139984764	+	825.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007403, intron 19 of 23)	intron (NM_007403, intron 19 of 23)	2210.0	NR_106029	102465643.0		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	16.96	6.79	14.83	8.45	39.68	23.52	41.52	38.16	3.15	5.02	7.54	4.7
Merged-chr2-45081623-2	chr2	45081521	45081721	+	825.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	28656.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.44	9.06	6.85	7.24	13.91	15.68	7.64	13.46	11.41	10.54	8.04	8.46
Merged-chr14-8173831-3	chr14	8173717	8173917	+	825.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-825.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	16.96	11.57	17.68	10.05	14.73	13.17	4.98	6.28	14.75	19.08	2.51	7.83
Merged-chr5-141018470-3	chr5	141018351	141018551	+	825.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17855.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.67	7.04	6.28	6.84	11.05	11.6	7.64	13.51	10.62	8.03	8.54	11.28
Merged-chr5-122649466-2	chr5	122649366	122649566	+	825.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-958.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	10.9	7.55	12.55	8.85	20.46	10.66	13.29	14.33	3.74	5.52	1.0	0.63
Merged-chr16-33914326-2	chr16	33914220	33914420	+	825.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	52718.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.27	4.28	5.13	4.02	6.14	12.86	4.98	9.08	9.83	7.03	10.55	6.27
Merged-chr2-143862849-2	chr2	143862744	143862944	+	825.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009751, exon 1 of 8)	exon (NM_009751, exon 1 of 8)	329.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	6.06	5.28	9.13	2.01	11.45	8.47	10.96	11.47	12.39	13.05	15.07	5.33
Merged-chr6-50312810-2	chr6	50312714	50312914	+	825.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 15 of 21)	intron (NM_027881, intron 15 of 21)	-51045.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	7.27	7.55	1.14	8.85	9.82	11.29	4.32	13.37	19.87	12.05	15.07	12.22
Merged-chr4-10978189-3	chr4	10978080	10978280	+	825.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29439.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	2.42	8.55	7.42	8.85	17.59	11.6	10.3	15.28	16.72	11.05	19.6	11.28
Merged-chr8-45344484-3	chr8	45344392	45344592	+	825.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153535, exon 10 of 14)	exon (NM_153535, exon 10 of 14)	-11296.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	8.48	9.56	16.54	4.02	1.64	9.72	4.32	5.86	18.29	14.06	9.55	10.96
Merged-chr5-123682568-3	chr5	123682489	123682689	+	825.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	1772.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	13.33	6.54	6.85	10.05	15.96	15.37	13.95	19.99	13.96	10.54	22.61	6.58
Merged-chr15-35917556-2	chr15	35917439	35917639	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20707.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	3.23	4.28	7.42	8.85	8.59	8.15	8.97	13.88	3.93	4.02	12.56	10.34
Merged-chr3-103280499-2	chr3	103280376	103280576	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079830, intron 1 of 18)	CpG	1183.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	4.85	6.04	11.41	7.24	9.82	11.6	14.62	11.55	5.9	10.04	10.05	5.64
Merged-chr4-19856282-1	chr4	19856182	19856382	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37555.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	1.21	2.01	0.0	1.21	9.41	7.84	9.63	8.52	5.7	0.5	6.03	4.07
Merged-chr19-40995801-2	chr19	40995702	40995902	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1267.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	12.52	8.3	13.12	8.85	17.59	14.42	10.63	12.67	5.7	5.02	4.52	3.45
Merged-chr5-30073541-1	chr5	30073441	30073641	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033402)	promoter-TSS (NR_033402)	84.0	NR_033402	22171.0	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	4.04	6.54	1.71	2.41	6.14	2.2	4.65	7.99	5.51	8.54	5.53	4.7
Merged-chr5-112985987-1	chr5	112985887	112986087	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	29551.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	6.86	2.52	6.85	4.42	4.09	9.09	6.64	11.52	3.93	2.51	2.01	2.51
Merged-chr2-63511083-3	chr2	63510978	63511178	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64210.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	6.46	11.82	9.7	11.66	6.95	7.84	6.64	8.27	14.36	10.54	16.08	6.89
Merged-chr14-73209498-3	chr14	73209406	73209606	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 20 of 26)	intron (NM_009029, intron 20 of 26)	-2655.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	9.29	7.8	12.55	12.47	24.96	1.88	9.63	9.62	14.95	14.56	16.58	15.35
Merged-chr8-115638395-1	chr8	115638295	115638495	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68499.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.25	5.79	3.42	13.27	13.09	5.02	4.65	13.51	4.72	6.53	4.02	8.77
Merged-chr9-73044879-3	chr9	73044778	73044978	+	825.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	68.0	NM_001301230	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	8.48	9.81	10.84	8.85	6.55	12.23	11.96	17.47	12.78	7.03	13.57	5.33
Merged-chr13-100601234-3	chr13	100601140	100601340	+	825.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	15704.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	1.21	2.26	1.71	5.63	8.59	13.17	3.32	10.26	15.14	11.55	16.58	17.54
Merged-chr10-120876380-3	chr10	120876296	120876496	+	825.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	18767.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	10.5	4.78	17.11	8.04	18.82	17.87	4.65	15.93	12.19	8.54	10.05	8.46
Merged-chr4-19893987-3	chr4	19893888	19894088	+	825.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	28578.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.67	8.55	6.85	10.05	4.09	8.78	9.63	22.63	16.72	4.02	7.54	13.16
Merged-chr14-48131783-3	chr14	48131663	48131863	+	825.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10894.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	13.33	11.82	12.55	18.1	27.82	33.87	31.89	40.65	5.51	10.54	11.05	6.27
Merged-chr18-55357485-2	chr18	55357375	55357575	+	825.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-364884.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.42	2.01	7.99	0.0	14.32	21.01	13.62	27.42	12.39	11.05	28.14	8.14
Merged-chr10-80245070-3	chr10	80244937	80245137	+	825.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023431, exon 14 of 14)	3' UTR (NM_023431, exon 14 of 14)	-4415.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	12.11	11.32	10.84	10.86	5.73	13.48	9.3	9.62	19.08	12.55	24.62	12.53
Merged-chr14-19706659-3	chr14	19706562	19706762	+	825.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44595.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	9.69	9.56	17.68	5.63	9.82	17.56	8.3	9.84	16.52	20.08	20.6	11.28
Merged-chr6-83640846-1	chr6	83640746	83640946	+	825.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	15270.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.44	4.53	14.26	5.23	4.09	5.96	9.97	14.1	8.46	5.52	8.04	5.33
Merged-chr3-9031119-1	chr3	9031019	9031219	+	825.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-26396.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.81	0.0	1.14	1.21	2.86	0.63	0.66	1.07	5.51	7.53	7.54	7.52
Merged-chr16-85162986-3	chr16	85162889	85163089	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	10718.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	17.36	7.29	8.56	27.35	13.5	14.74	16.61	19.79	10.23	2.51	8.04	6.58
Merged-chr2-30128981-3	chr2	30128879	30129079	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4368.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	12.11	9.06	7.99	7.64	22.5	22.89	2.99	3.76	18.29	30.63	16.58	11.59
Merged-chr2-102189665-1	chr2	102189565	102189765	+	825.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3205.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	1.51	0.0	1.61	3.27	7.53	6.31	15.36	3.34	7.53	9.04	10.02
Merged-chr11-114880774-3	chr11	114880613	114880813	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9328.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.67	9.81	2.85	4.83	11.86	6.59	4.65	5.3	7.67	7.03	5.53	11.59
Merged-chr6-73518109-1	chr6	73518009	73518209	+	825.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47088.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.85	4.28	2.28	4.83	2.45	10.03	9.3	8.1	0.2	1.0	0.0	0.94
Merged-chr19-32183288-3	chr19	32183198	32183398	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	L1MC4a|LINE|L1	27715.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	12.11	9.06	12.55	10.05	22.5	11.92	21.26	15.42	8.26	3.01	2.51	10.02
Merged-chrX-36870663-3	chrX	36870545	36870745	+	825.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3650.0	NM_001313696	22209.0	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	8.88	7.04	18.83	10.46	18.41	32.93	16.61	10.46	8.85	15.57	15.07	8.77
Merged-chr18-34663280-2	chr18	34663193	34663393	+	825.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11557.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	6.06	7.29	6.28	6.44	2.86	11.29	3.32	8.36	15.54	18.58	12.56	15.04
Merged-chr17-26487382-3	chr17	26487259	26487459	+	825.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21113.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.88	10.82	15.97	13.67	8.59	12.54	9.63	11.72	14.36	6.03	15.58	10.34
Merged-chr15-77846444-3	chr15	77846352	77846552	+	825.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4277.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	8.08	12.58	7.42	10.86	13.91	12.86	4.98	7.57	14.55	30.63	4.02	12.84
Merged-chr16-36531795-2	chr16	36531693	36531893	+	825.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30341.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.65	1.76	7.42	6.84	12.27	9.72	6.98	13.96	14.95	4.02	15.07	7.21
Merged-chr2-27560963-3	chr2	27560879	27561079	+	825.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45832.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	8.48	13.08	20.54	12.07	16.36	18.19	9.3	15.25	11.6	3.01	10.55	7.21
Merged-chr15-84105613-1	chr15	84105513	84105713	+	825.25	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013873, exon 1 of 7)	5' UTR (NM_013873, exon 1 of 7)	141.0	NM_013873	29859.0	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL|BR-STL-1|NST|ST4A1|Sultx3|mBR-STL	sulfotransferase family 4A, member 1	protein-coding	2.83	4.28	5.7	0.4	2.86	12.23	6.98	8.83	2.56	1.51	4.02	3.13
Merged-chr16-29527283-2	chr16	29527184	29527384	+	825.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164613, intron 2 of 21)	intron (NM_001164613, intron 2 of 21)	14199.0	NM_172613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	5.25	4.28	14.26	7.64	14.73	12.23	9.97	20.94	12.98	14.06	15.58	8.77
Merged-chrX-8136070-3	chrX	8135988	8136188	+	825.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3230.0	NM_026137	73447.0	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	8.08	6.04	4.56	10.05	5.32	14.42	12.29	11.21	13.18	12.55	11.05	10.02
Merged-chr14-50939176-3	chr14	50939070	50939270	+	825.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-5133.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	9.29	10.82	7.99	6.44	24.55	20.7	8.3	18.14	24.98	24.1	32.16	9.4
Merged-chr11-109347764-3	chr11	109347654	109347854	+	825.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	887.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	21.4	8.05	6.28	14.48	12.27	16.31	12.62	13.6	13.18	9.54	8.54	6.27
Merged-chr18-23942404-3	chr18	23942320	23942520	+	825.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12268.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	11.31	15.85	8.56	16.49	5.32	9.72	9.3	11.47	9.05	9.54	11.05	5.64
Merged-chr16-4679165-4	chr16	4679050	4679250	+	825.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030205, intron 1 of 27)	CpG	570.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	10.09	12.83	6.85	8.85	6.95	9.41	11.63	6.14	10.23	18.08	11.56	19.74
Merged-chr12-111037799-5	chr12	111037657	111037857	+	825.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2041.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.44	6.29	5.13	3.22	8.59	4.7	4.32	4.85	2.75	11.05	5.53	10.96
Merged-chr17-80083428-3	chr17	80083335	80083535	+	825.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21167.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	8.88	7.8	16.54	12.87	24.96	11.92	8.64	18.53	24.78	10.04	17.59	13.16
Merged-chr19-4306402-3	chr19	4306299	4306499	+	825.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-177.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	16.96	10.06	13.12	9.25	19.23	23.83	5.98	6.39	13.57	20.08	33.67	15.04
Merged-chr13-75844454-3	chr13	75844360	75844560	+	825.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	4574.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	14.54	10.82	14.83	14.08	12.68	9.41	2.99	8.66	10.82	19.58	10.55	7.83
Merged-chr12-105009918-3	chr12	105009819	105010019	+	825.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-110.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	23.42	12.58	20.54	8.04	18.0	22.89	26.57	20.19	6.29	4.02	6.53	16.92
Merged-chr7-142392007-2	chr7	142391927	142392127	+	825.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5a|LINE|L1	-4157.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.23	0.5	1.71	1.61	7.36	0.63	5.98	9.93	10.03	9.54	14.07	12.53
Merged-chr18-78138435-2	chr18	78138350	78138550	+	825.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	3669.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	4.85	5.79	2.28	1.61	9.41	16.31	9.3	7.93	16.92	9.54	14.07	5.33
Merged-chr14-25587809-2	chr14	25587710	25587910	+	825.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	1006.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	6.06	6.54	6.28	10.05	11.45	20.38	12.29	11.47	11.6	3.51	12.56	6.58
Merged-chr18-32285340-3	chr18	32285247	32285447	+	825.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45016.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	9.29	11.32	10.27	16.89	12.68	9.72	8.64	15.2	12.98	14.06	13.06	17.54
Merged-chr3-136795000-3	chr3	136794885	136795085	+	825.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	124919.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	9.29	6.04	16.54	16.89	9.41	9.72	8.3	12.73	13.57	8.54	13.06	4.39
Merged-chr17-26571050-3	chr17	26570909	26571109	+	825.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	9497.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.04	6.04	2.85	1.61	13.09	10.66	4.32	13.99	18.1	11.05	19.09	10.96
Merged-chr1-9546369-4	chr1	9546188	9546388	+	825.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021511, exon 1 of 1)	exon (NM_021511, exon 1 of 1)	880.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	10.9	10.82	8.56	10.46	15.55	6.9	7.64	4.37	9.64	11.55	13.57	7.83
Merged-chr8-66394383-2	chr8	66394271	66394471	+	825.116699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	8070.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	3.23	5.03	14.83	7.64	16.77	19.76	10.3	14.47	14.95	13.56	15.07	9.08
Merged-chr15-59649789-3	chr15	59649728	59649928	+	825.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1174.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	14.54	3.77	6.85	0.0	9.82	15.05	14.62	12.84	9.44	15.57	16.58	17.23
Merged-chr3-37584735-2	chr3	37584631	37584831	+	825.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25160.0	NR_130162	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	10.9	7.55	23.39	20.91	9.0	8.47	3.99	13.63	7.28	7.03	5.53	4.07
Merged-chr10-82797042-2	chr10	82796957	82797157	+	825.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15066.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	12.52	5.03	8.56	15.69	13.5	11.6	13.62	14.61	6.69	7.03	4.52	2.82
Merged-chr15-100403479-3	chr15	100403399	100403599	+	825.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008732, intron 9 of 16)	intron (NM_008732, intron 9 of 16)	19556.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	11.71	9.06	6.28	9.65	24.96	15.68	6.31	21.11	10.42	9.04	20.1	11.9
Merged-chr9-55541117-3	chr9	55541014	55541214	+	825.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027397)	promoter-TSS (NM_027397)	-35.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	9.69	8.05	6.85	7.64	12.27	11.29	9.63	8.44	12.59	15.57	14.57	14.41
Merged-chr15-85012763-1	chr15	85012663	85012863	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	4.85	0.75	6.28	12.87	7.77	9.72	9.63	14.75	8.65	5.52	4.02	0.63
Merged-chr9-36768248-1	chr9	36768148	36768348	+	825.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-670.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	8.48	5.79	15.4	12.87	4.91	6.9	6.31	6.81	10.82	31.63	19.6	18.17
Merged-chr5-90589132-1	chr5	90589032	90589232	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	27923.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	8.48	2.52	4.56	6.03	11.86	8.78	4.65	6.48	4.92	13.05	9.04	8.14
Merged-chr8-117061671-2	chr8	117061584	117061784	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 9 of 42)	intron (NM_029686, intron 9 of 42)	20765.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	5.65	2.01	3.99	3.62	9.41	0.63	1.33	7.46	13.37	4.02	4.52	6.89
Merged-chr4-47258766-1	chr4	47258666	47258866	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009928, exon 8 of 40)	exon (NM_009928, exon 8 of 40)	50754.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	7.27	7.8	6.28	4.42	6.55	6.9	3.99	11.05	6.69	3.01	9.55	8.14
Merged-chr3-88492633-1	chr3	88492533	88492733	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	679.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.25	2.52	2.85	5.63	10.23	4.08	11.63	7.71	5.7	9.54	13.06	7.83
Merged-chr8-57427752-1	chr8	57427652	57427852	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-28171.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	4.85	5.79	5.7	6.03	8.18	13.8	4.98	11.58	8.06	4.52	2.01	2.19
Merged-chr10-13686296-3	chr10	13686192	13686392	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-133150.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	2.02	8.05	10.84	19.31	15.14	15.68	27.57	30.53	11.21	3.01	7.03	9.08
Merged-chr8-115583435-1	chr8	115583335	115583535	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123459.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	1.21	0.25	3.42	11.26	5.73	4.39	3.99	11.1	4.33	4.52	6.53	3.76
Merged-chr17-11637893-2	chr17	11637791	11637991	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	245298.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	18.98	18.61	19.97	29.76	4.5	5.33	0.66	7.74	7.67	8.54	6.53	2.51
Merged-chr5-130842543-2	chr5	130842421	130842621	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	393729.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.25	5.28	2.85	6.44	5.32	3.76	9.97	15.25	8.46	3.51	10.55	8.77
Merged-chr7-72109185-2	chr7	72109087	72109287	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 19 of 22)	intron (NM_001024703, intron 19 of 22)	-147169.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	9.69	7.04	13.69	8.85	16.77	22.58	18.6	25.91	1.57	3.51	7.03	1.25
Merged-chr2-38602151-2	chr2	38602056	38602256	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41750.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	4.85	6.79	18.83	15.28	8.59	1.25	8.97	14.97	7.67	7.03	5.53	8.14
Merged-chr12-91665675-1	chr12	91665575	91665775	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-75188.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.88	6.29	6.28	9.65	12.27	4.39	9.97	8.02	3.15	4.02	7.03	2.51
Merged-chr9-50479349-2	chr9	50479241	50479441	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15184.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	6.86	16.1	7.99	4.02	15.14	15.37	2.99	3.81	6.69	5.02	18.59	5.01
Merged-chr5-139408157-1	chr5	139408057	139408257	+	825.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1770.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	3.23	9.81	6.28	3.62	4.09	4.7	7.97	5.78	7.67	11.05	4.02	10.02
Merged-chr6-117428037-1	chr6	117427937	117428137	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67198.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	6.46	3.52	6.28	6.84	6.95	0.94	1.33	7.68	2.16	1.51	7.54	7.83
Merged-chr15-61935704-1	chr15	61935604	61935804	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-49637.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.04	1.76	1.14	5.63	4.5	3.45	8.97	8.52	0.59	1.51	5.53	4.7
Merged-chr12-119359571-1	chr12	119359471	119359671	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83839.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.81	0.5	0.0	2.01	3.68	0.63	5.98	5.92	5.7	6.03	3.01	0.94
Merged-chr4-155234392-3	chr4	155234185	155234385	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11750.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.44	1.26	4.56	6.03	4.5	12.23	2.99	5.3	1.77	2.01	2.01	3.76
Merged-chr14-21273719-3	chr14	21273624	21273824	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	MIRc|SINE|MIR	197572.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	11.71	5.03	17.11	12.07	6.55	8.15	14.95	18.7	14.75	2.51	17.08	8.77
Merged-chr18-53166657-1	chr18	53166557	53166757	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9635.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	7.27	5.53	3.42	2.41	2.86	3.76	6.98	6.64	6.69	8.54	8.54	2.19
Merged-chr18-84784050-2	chr18	84783949	84784149	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39982.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	3.23	6.54	6.85	10.05	16.36	9.72	8.3	11.72	17.11	8.03	19.09	7.83
Merged-chr8-71597020-3	chr8	71596905	71597105	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166213)	promoter-TSS (NM_001166213)	-641.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	25.04	23.64	7.99	6.03	10.64	18.5	4.65	5.69	20.85	12.05	15.58	4.07
Merged-chr3-51170432-3	chr3	51170330	51170530	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54017.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.63	6.54	13.12	6.84	3.68	14.11	2.99	14.55	16.33	14.06	21.61	10.96
Merged-chr19-46987861-1	chr19	46987761	46987961	+	825.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-18294.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	3.02	0.0	0.0	0.0	0.31	0.0	0.84	14.75	10.54	21.61	9.4
Merged-chr16-14365670-3	chr16	14365582	14365782	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	4124.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	11.31	6.29	4.56	10.86	11.45	16.93	3.32	10.04	13.77	7.53	18.09	4.7
Merged-chr12-40681310-3	chr12	40681221	40681421	+	824.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 12 of 52)	intron (NM_172803, intron 12 of 52)	235268.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	12.52	5.28	8.56	10.46	12.68	14.11	8.3	16.37	16.33	16.57	11.56	7.83
Merged-chr5-105651303-3	chr5	105651216	105651416	+	824.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48653.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	10.5	11.07	1.71	7.24	16.77	16.31	11.29	12.7	13.57	10.04	12.56	6.89
Merged-chr11-49085044-3	chr11	49084937	49085137	+	824.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-1980.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.63	12.83	14.83	8.45	11.05	11.29	9.3	10.79	8.65	8.03	15.07	10.02
Merged-chr11-105990458-3	chr11	105990351	105990551	+	824.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_207624)	TTS (NM_207624)	-4224.0	NM_001101453	217246.0	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	9.29	9.81	11.41	13.27	15.14	10.66	29.56	29.02	16.33	14.56	26.63	11.9
Merged-chr5-134374736-2	chr5	134374634	134374834	+	824.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	48280.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	11.31	6.29	4.56	12.87	9.82	10.03	8.97	12.81	6.1	7.03	10.05	4.07
Merged-chr7-127252590-3	chr7	127252484	127252684	+	824.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360916, intron 2 of 2)	B2_Mm2|SINE|B2	7483.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	12.52	15.59	15.97	7.64	17.18	16.93	6.31	10.85	9.24	9.54	17.59	14.72
Merged-chr16-22015780-3	chr16	22015679	22015879	+	824.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027488, intron 3 of 16)	intron (NR_027488, intron 3 of 16)	6295.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	10.09	9.56	9.7	8.45	20.86	20.7	10.3	18.79	12.19	24.6	14.07	2.51
Merged-chr19-12009886-6	chr19	12009737	12009937	+	824.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26903.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	18.57	7.55	6.28	11.26	9.82	12.23	9.97	6.59	11.6	13.56	7.54	14.72
Merged-chr9-110281315-3	chr9	110281213	110281413	+	824.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105744)	promoter-TSS (NR_105744)	26.0	NR_105744	102465959.0		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	39.98	59.11	42.21	36.6	25.36	26.03	15.28	16.6	24.0	24.1	33.16	27.88
Merged-chr2-174085203-3	chr2	174085100	174085300	+	824.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	8149.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	9.69	6.04	9.7	11.66	15.14	5.96	11.96	9.42	14.36	6.03	14.07	3.45
Merged-chr9-83400901-1	chr9	83400801	83401001	+	824.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029434, intron 4 of 7)	GA-rich|Low_complexity|Low_complexity	-30646.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	3.63	2.52	2.28	5.23	11.86	7.21	9.63	13.23	3.93	2.01	13.06	5.33
Merged-chr10-21918874-3	chr10	21918781	21918981	+	824.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	36697.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.44	10.06	15.4	7.64	17.18	19.13	11.29	17.38	13.37	19.08	10.55	7.83
Merged-chr19-34262511-3	chr19	34262411	34262611	+	824.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7138.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	9.29	5.53	5.13	10.05	16.36	10.98	10.63	13.74	10.82	20.08	27.64	10.65
Merged-chr11-49100601-3	chr11	49100517	49100717	+	824.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	13140.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	10.5	15.34	9.7	8.85	13.09	8.47	13.62	14.33	20.06	19.58	16.08	8.77
Merged-chr9-32676284-1	chr9	32676184	32676384	+	824.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19758.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.06	6.29	9.13	4.42	12.27	9.72	6.64	6.14	8.65	6.53	7.03	3.45
Merged-chr6-122810358-2	chr6	122810278	122810478	+	824.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9806.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	7.67	6.79	5.7	4.02	9.82	7.21	1.66	8.27	10.42	13.05	13.57	8.14
Merged-chr12-75720183-1	chr12	75720083	75720283	+	824.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030750, intron 2 of 2)	B1_Mur1|SINE|Alu	15546.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	5.65	4.28	17.11	5.23	9.41	8.78	4.32	13.68	11.01	1.51	5.53	3.45
Merged-chr14-102942562-3	chr14	102942429	102942629	+	824.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40103.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	2.83	1.26	5.13	2.41	4.09	0.0	5.31	8.1	5.31	7.03	2.01	2.19
Merged-chr1-172586596-3	chr1	172586494	172586694	+	824.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029084, intron 2 of 4)	intron (NM_029084, intron 2 of 4)	3974.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	10.5	11.82	7.99	16.89	9.0	9.41	2.33	6.67	30.29	20.59	44.72	17.23
Merged-chr1-191611853-1	chr1	191611753	191611953	+	824.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178632, intron 12 of 19)	intron (NM_178632, intron 12 of 19)	36217.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	8.48	9.06	38.79	14.08	2.86	4.7	3.65	8.66	0.39	0.5	1.0	0.94
Merged-chr15-5221949-1	chr15	5221849	5222049	+	824.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	22238.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.63	4.28	6.28	4.42	5.73	9.09	8.3	8.5	4.92	6.53	9.55	4.7
Merged-chr4-3680358-2	chr4	3680298	3680498	+	824.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	2277.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	4.85	7.04	2.85	5.23	2.45	5.96	3.99	4.46	4.52	8.03	7.03	5.95
Merged-chr6-134671052-2	chr6	134670967	134671167	+	824.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 2 of 3)	intron (NM_001170479, intron 2 of 3)	30127.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	6.86	1.01	5.7	2.41	11.05	4.7	8.3	7.07	7.87	3.51	10.55	2.82
Merged-chr7-5058250-4	chr7	5058142	5058342	+	824.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	1516.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	16.56	6.04	5.13	12.47	12.68	6.27	6.98	9.17	10.62	15.57	7.03	3.13
Merged-chr15-75905642-3	chr15	75905517	75905717	+	824.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	3727.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	8.48	17.36	7.99	10.86	9.0	10.98	10.3	8.72	16.13	9.54	23.11	15.35
Merged-chr13-49306992-4	chr13	49306972	49307172	+	824.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	2136.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	9.29	5.28	13.69	15.28	20.05	11.6	11.63	21.08	7.08	16.07	10.55	9.71
Merged-chr10-57835309-2	chr10	57835214	57835414	+	824.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40770.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.44	4.53	7.99	16.49	11.86	21.95	31.56	33.17	9.24	8.54	14.57	10.65
Merged-chr3-100917013-2	chr3	100916943	100917143	+	824.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5450.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	2.02	2.52	2.28	6.84	5.32	5.33	5.98	5.05	8.85	2.51	8.04	7.83
Merged-chr13-105311292-3	chr13	105311189	105311389	+	824.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16804.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.25	9.56	9.7	21.72	8.59	6.9	11.63	13.37	16.33	13.56	14.57	15.04
Merged-chr7-16044036-3	chr7	16043945	16044145	+	824.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27800.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	15.34	9.31	13.69	17.29	11.45	10.35	10.63	13.99	12.78	8.03	21.1	13.47
Merged-chr3-144580129-2	chr3	144580015	144580215	+	824.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	9688.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.63	6.04	8.56	10.05	4.5	7.53	7.64	6.81	10.23	10.54	6.53	5.95
Merged-chr7-27273963-3	chr7	27273872	27274072	+	824.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010950, exon 7 of 10)	exon (NM_010950, exon 7 of 10)	15211.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	8.88	11.32	11.41	13.27	16.36	21.64	17.27	17.83	6.49	7.53	10.05	7.83
Merged-chr19-34390166-3	chr19	34390070	34390270	+	824.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER76|LTR|ERVL	84965.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	12.92	5.28	14.26	16.09	14.73	12.23	15.61	28.93	12.39	11.55	11.56	10.65
Merged-chr13-12464351-3	chr13	12464254	12464454	+	824.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2616.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	9.69	11.57	21.11	12.87	7.36	7.84	11.96	9.7	17.11	7.53	13.57	13.16
Merged-chr3-19199309-3	chr3	19199210	19199410	+	824.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	11015.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	2.83	6.29	26.81	10.46	13.5	8.47	8.3	11.61	23.21	27.11	19.09	21.62
Merged-chr7-141308802-3	chr7	141308709	141308909	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	16803.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	2.02	6.29	3.42	12.87	18.82	19.13	17.61	17.55	16.33	25.61	16.08	22.56
Merged-chr16-36779767-1	chr16	36779667	36779867	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	5195.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	1.62	1.01	3.99	3.22	2.45	7.84	6.98	9.17	5.7	3.51	8.54	1.88
Merged-chr13-37964735-3	chr13	37964604	37964804	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29504.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	21.4	18.36	7.99	9.25	14.32	11.92	6.98	13.12	18.29	8.54	10.05	7.83
Merged-chr6-83032923-3	chr6	83032833	83033033	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291799, exon 2 of 5)	exon (NM_001291799, exon 2 of 5)	538.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.27	11.32	5.7	10.86	11.05	20.38	6.98	11.64	16.13	13.05	10.55	12.22
Merged-chr5-73637888-2	chr5	73637804	73638004	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5483.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	4.04	7.55	4.56	8.85	6.95	7.53	1.33	7.77	5.51	11.05	11.05	5.95
Merged-chr19-41847253-2	chr19	41847139	41847339	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	893.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	14.13	2.77	9.13	12.87	12.27	4.7	5.98	7.21	3.34	7.03	10.05	6.58
Merged-chr4-155220914-1	chr4	155220814	155221014	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1621.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	2.83	1.01	3.42	9.25	1.64	7.53	6.98	9.42	3.15	1.51	5.02	5.33
Merged-chr2-91002274-2	chr2	91002187	91002387	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198683, intron 4 of 13)	intron (NM_198683, intron 4 of 13)	-33340.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	6.06	6.04	12.55	12.87	12.27	8.78	12.95	15.2	4.13	11.55	2.51	5.64
Merged-chr1-64738891-1	chr1	64738791	64738991	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	4.44	6.04	6.85	9.25	11.05	8.15	15.61	7.54	5.51	6.53	8.04	6.27
Merged-chr19-10849163-2	chr19	10849076	10849276	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023044, intron 2 of 7)	B4|SINE|B4	6632.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	6.46	7.04	3.42	0.4	2.86	5.02	0.0	2.72	2.16	2.01	2.51	5.95
Merged-chr17-86802939-1	chr17	86802839	86803039	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	49075.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.04	1.76	2.28	2.01	8.59	5.64	7.31	9.73	3.15	1.51	7.54	5.01
Merged-chr3-37360791-2	chr3	37360692	37360892	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12139.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	2.02	1.26	0.0	4.02	3.68	4.08	10.63	7.54	8.85	7.53	16.58	11.59
Merged-chr16-45029675-1	chr16	45029575	45029775	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64336.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.4	0.75	13.69	4.02	5.73	6.27	10.63	13.35	3.93	20.59	4.52	5.01
Merged-chr16-4381703-3	chr16	4381629	4381829	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	38769.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.44	12.58	14.26	10.46	11.86	9.09	9.3	12.25	16.92	10.54	22.61	6.27
Merged-chr5-43206853-1	chr5	43206753	43206953	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-26610.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.25	3.02	1.14	0.0	4.91	5.02	8.64	10.91	5.7	3.01	6.03	0.94
Merged-chr7-136381048-2	chr7	136380948	136381148	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31633.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	1.76	2.28	0.8	0.0	8.78	7.64	8.97	14.36	10.04	7.54	10.65
Merged-chr6-125595017-3	chr6	125594922	125595122	+	824.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 10 of 51)	MTD|LTR|ERVL-MaLR	42074.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	10.9	9.81	7.42	16.49	11.86	8.78	13.95	15.53	15.74	11.55	23.62	9.4
Merged-chr10-128495565-3	chr10	128495459	128495659	+	824.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172259, intron 4 of 6)	PB1D11|SINE|Alu	-1673.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	21.0	11.32	17.11	15.69	9.0	14.42	7.64	4.01	14.16	7.53	16.08	10.02
Merged-chr9-105053965-3	chr9	105053854	105054054	+	824.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053159, intron 1 of 9)	intron (NM_053159, intron 1 of 9)	686.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	8.48	3.77	19.97	22.52	6.95	9.09	20.26	24.0	8.46	1.51	9.04	4.39
Merged-chr11-120748272-3	chr11	120748180	120748380	+	824.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-16259.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	14.94	7.8	20.54	11.26	27.0	12.54	10.3	7.49	17.31	14.06	21.1	9.08
Merged-chr18-42510172-2	chr18	42510069	42510269	+	824.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-1318.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	9.29	7.29	25.1	23.33	11.86	4.7	9.63	16.46	4.72	4.02	4.02	3.13
Merged-chr13-59842326-2	chr13	59842240	59842440	+	824.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-19193.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	6.46	4.02	12.55	8.85	10.23	8.47	1.66	8.5	6.1	13.05	25.63	13.16
Merged-chr11-110542125-2	chr11	110542028	110542228	+	824.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62788.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.88	10.82	11.98	10.05	26.59	18.81	7.97	16.6	8.26	4.52	17.59	7.52
Merged-chr15-77831498-2	chr15	77831397	77831597	+	824.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	10678.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	10.09	5.28	16.54	7.24	10.64	18.5	7.31	9.7	18.49	11.05	15.07	5.01
Merged-chr8-123283150-2	chr8	123283057	123283257	+	824.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016925, intron 28 of 42)	B1F1|SINE|Alu	-28935.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	6.46	10.56	11.41	8.04	10.23	7.21	11.63	17.55	3.34	2.01	10.55	3.76
Merged-chr3-41468001-2	chr3	41467905	41468105	+	824.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	25194.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	8.88	8.8	7.99	1.21	4.09	24.46	12.95	7.6	6.29	3.01	12.06	0.31
Merged-chr14-12993841-1	chr14	12993741	12993941	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-170762.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	1.62	0.5	2.28	0.8	13.09	9.72	7.64	16.6	17.11	8.54	6.53	0.94
Merged-chr13-37120436-1	chr13	37120336	37120536	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70192.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	1.62	3.02	2.28	7.24	2.45	9.41	7.64	10.68	5.9	2.01	5.02	5.01
Merged-chr6-97450977-3	chr6	97450882	97451082	+	824.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	L1_Mus1|LINE|L1	8304.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	18.17	10.31	13.69	8.85	14.73	23.83	10.96	11.89	14.95	20.59	14.57	13.47
Merged-chr9-105521346-1	chr9	105521246	105521446	+	824.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253831)	promoter-TSS (NM_001253831)	-89.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.23	0.0	1.71	6.44	0.82	3.76	1.33	3.67	11.01	12.55	21.1	9.4
Merged-chr2-124668679-3	chr2	124668544	124668744	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172537)	TTS (NM_172537)	15063.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.23	5.03	6.28	2.41	7.36	1.25	1.66	16.09	4.13	2.01	4.52	9.4
Merged-chr12-3835105-1	chr12	3835005	3835205	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001271753, exon 2 of 23)	5' UTR (NM_001271753, exon 2 of 23)	27139.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.25	5.79	5.7	0.8	3.68	7.84	12.95	10.32	5.9	2.01	9.04	7.83
Merged-chr15-103552726-3	chr15	103552628	103552828	+	824.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12353.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	10.09	19.37	13.12	11.26	11.45	19.76	8.64	19.85	12.59	9.04	15.07	13.47
Merged-chr16-87676452-1	chr16	87676352	87676552	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-22502.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.62	1.51	0.57	0.0	8.59	10.66	4.32	12.9	2.75	0.5	11.05	0.63
Merged-chrX-60385554-1	chrX	60385454	60385654	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	MTEb|LTR|ERVL-MaLR	8938.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	6.86	5.03	6.28	8.85	7.36	4.7	7.97	8.19	13.57	8.03	2.51	5.33
Merged-chr11-103364398-3	chr11	103364297	103364497	+	824.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183288)	promoter-TSS (NM_183288)	-705.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	12.52	12.58	16.54	13.67	14.73	17.56	6.31	9.59	8.46	8.54	10.55	6.89
Merged-chr2-128855624-3	chr2	128855530	128855730	+	824.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8302.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	8.88	5.03	13.12	17.29	18.82	12.86	14.95	23.16	13.18	12.05	11.05	15.98
Merged-chr1-40294575-3	chr1	40294492	40294692	+	824.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123382, intron 4 of 10)	intron (NM_001123382, intron 4 of 10)	28006.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	10.5	11.32	24.53	17.7	10.64	19.13	11.63	24.22	29.5	13.56	14.57	8.77
Merged-chr1-191180036-2	chr1	191179909	191180109	+	824.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3324.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	13.73	3.27	14.83	2.41	9.0	3.45	1.33	4.91	4.52	3.51	9.55	5.95
Merged-chr12-38814161-2	chr12	38814076	38814276	+	824.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	30465.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.83	8.3	2.28	12.47	11.45	9.09	9.63	10.71	6.49	6.03	3.01	4.07
Merged-chr7-140127154-2	chr7	140127060	140127260	+	824.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153783, intron 2 of 6)	intron (NM_153783, intron 2 of 6)	1475.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	9.29	4.02	3.42	3.62	5.73	4.08	6.31	4.29	5.9	2.51	1.0	2.82
Merged-chr6-136471090-1	chr6	136470990	136471190	+	824.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47761.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.42	1.76	1.14	2.41	6.55	8.15	10.96	5.78	6.29	2.51	5.02	5.01
Merged-chr6-29485313-3	chr6	29485199	29485399	+	824.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029985, intron 32 of 37)	intron (NM_001029985, intron 32 of 37)	13862.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	8.08	9.31	7.99	8.04	11.86	9.41	4.32	7.15	12.0	18.58	19.6	4.07
Merged-chr5-80855203-3	chr5	80855110	80855310	+	824.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165361.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.25	8.3	17.11	13.27	4.5	4.7	10.96	10.12	19.67	14.56	13.06	5.64
Merged-chr14-47299046-3	chr14	47298940	47299140	+	824.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178684, intron 1 of 3)	intron (NM_178684, intron 1 of 3)	766.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	8.48	15.34	12.55	18.5	18.41	10.03	7.31	12.93	20.46	8.03	20.1	5.95
Merged-chr19-42714003-2	chr19	42713907	42714107	+	824.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38768.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	8.48	9.06	21.68	13.27	11.86	9.09	7.31	12.36	5.11	7.03	7.03	9.08
Merged-chr9-100570745-2	chr9	100570644	100570844	+	824.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	341.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	10.09	7.29	10.84	7.64	7.77	6.9	14.62	13.51	5.7	4.02	9.04	9.08
Merged-chr16-84955664-3	chr16	84955561	84955761	+	824.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 15 of 15)	intron (NM_001198825, intron 15 of 15)	-16550.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	8.08	8.55	7.42	7.24	11.45	9.09	8.97	12.14	17.51	18.08	43.72	14.41
Merged-chr4-44016338-3	chr4	44016235	44016435	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	3685.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	11.71	14.09	13.69	10.46	6.95	13.48	3.65	11.92	13.37	10.54	13.06	9.71
Merged-chr14-21986187-3	chr14	21986101	21986301	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	3400.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	5.65	8.8	2.85	6.84	9.82	10.66	4.65	13.79	16.72	12.05	18.09	6.89
Merged-chr19-8991507-1	chr19	8991407	8991607	+	824.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	2223.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	8.08	11.07	2.28	4.42	11.45	12.54	7.97	7.07	4.72	10.04	11.05	2.19
Merged-chr12-12269332-3	chr12	12269221	12269421	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7182.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	10.09	15.09	4.56	2.41	11.05	30.42	6.98	4.43	32.45	30.63	13.57	8.46
Merged-chr19-10295329-3	chr19	10295230	10295430	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	9547.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	14.13	10.82	6.28	6.44	10.64	7.84	5.31	11.13	9.64	6.03	8.04	6.58
Merged-chr1-84241595-3	chr1	84241486	84241686	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-22625.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	8.48	7.04	13.12	4.83	11.05	7.53	8.3	21.87	20.26	14.56	18.09	12.53
Merged-chr17-71144457-2	chr17	71144380	71144580	+	824.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39052.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.65	1.76	5.7	12.07	10.23	11.29	3.99	10.12	10.62	7.53	8.54	8.77
Merged-chr5-115480269-2	chr5	115480161	115480361	+	824.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167691, exon 3 of 5)	exon (NM_001167691, exon 3 of 5)	4036.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.23	5.28	2.28	2.01	12.27	17.87	14.62	10.4	10.03	6.53	9.04	6.58
Merged-chr4-47057416-3	chr4	47057299	47057499	+	824.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356426)	promoter-TSS (NM_001356426)	-93.0	NM_001356426	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	8.08	2.26	17.11	6.44	25.36	16.93	9.97	19.63	13.18	21.09	24.12	8.46
Merged-chr14-70168117-3	chr14	70168034	70168234	+	824.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145978, intron 6 of 9)	intron (NM_145978, intron 6 of 9)	-8632.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	11.71	5.79	14.26	2.01	20.46	10.98	6.64	14.47	18.49	19.58	18.59	15.04
Merged-chr13-23519657-2	chr13	23519560	23519760	+	824.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11384.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	6.86	7.8	12.55	16.09	12.27	15.37	6.64	12.53	5.51	5.52	13.06	5.64
Merged-chr2-35135691-3	chr2	35135580	35135780	+	824.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_012018, exon 13 of 44)	exon (NM_012018, exon 13 of 44)	3446.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	14.94	12.83	28.52	8.04	11.05	10.35	14.62	19.54	7.67	14.06	25.12	7.83
Merged-chr4-135982190-3	chr4	135982074	135982274	+	824.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5070.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	15.34	5.79	21.68	10.46	19.23	13.17	5.65	10.18	9.24	14.06	16.58	8.77
Merged-chr11-49712080-3	chr11	49712004	49712204	+	824.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212484, intron 1 of 11)	CpG	618.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	7.67	13.83	10.84	12.47	8.59	8.15	16.94	10.37	21.05	9.54	12.06	16.92
Merged-chr8-87472669-1	chr8	87472569	87472769	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	-77.0	NM_019626	12404.0	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	4.04	3.52	2.28	4.83	10.23	6.9	8.97	10.85	4.52	2.01	7.03	4.07
Merged-chr6-38500251-1	chr6	38500151	38500351	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177185, intron 16 of 16)	intron (NM_177185, intron 16 of 16)	-7074.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	10.9	2.01	5.13	3.22	3.68	9.72	5.31	8.41	2.36	2.01	4.52	2.82
Merged-chr16-11006903-2	chr16	11006783	11006983	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2015.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	9.69	6.54	3.42	6.03	6.14	11.29	7.97	9.28	10.62	15.57	12.06	9.4
Merged-chr3-79843528-1	chr3	79843428	79843628	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-866.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.02	2.77	0.57	2.01	6.55	1.57	0.66	2.83	1.97	7.53	3.01	1.88
Merged-chr8-39060182-1	chr8	39060082	39060282	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357304, intron 2 of 7)	ORR1D1|LTR|ERVL-MaLR	54337.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	3.23	3.77	1.14	6.44	0.0	2.82	8.97	5.69	1.77	1.51	1.51	4.39
Merged-chr13-81655418-1	chr13	81655318	81655518	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2388.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	1.21	3.77	6.28	2.82	8.18	4.39	2.33	8.58	8.26	4.52	6.03	2.51
Merged-chr14-20892172-1	chr14	20892072	20892272	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37226.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.85	5.79	6.28	1.61	8.59	5.64	6.31	9.17	6.49	6.53	2.51	5.33
Merged-chr12-29289044-1	chr12	29288944	29289144	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	147115.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	2.02	0.5	0.0	2.01	4.5	3.76	6.64	11.52	4.33	2.01	8.54	3.76
Merged-chr3-41452209-1	chr3	41452109	41452309	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR37B|LTR|ERV1	40990.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	1.62	2.01	4.56	5.63	7.77	4.7	3.99	9.87	2.56	0.5	1.0	0.31
Merged-chr7-67426315-1	chr7	67426215	67426415	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53457.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.63	2.52	6.85	0.0	12.27	9.09	8.3	15.98	5.7	4.02	9.55	9.08
Merged-chr1-180945882-1	chr1	180945782	180945982	+	824.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3364.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	11.71	11.57	2.28	3.62	6.14	15.99	4.32	4.37	4.72	12.55	7.54	6.58
Merged-chr2-14190784-1	chr2	14190684	14190884	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	16260.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	6.06	0.5	2.85	10.46	9.0	4.08	2.66	8.13	6.1	3.01	9.55	5.64
Merged-chrX-48680818-1	chrX	48680718	48680918	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6340.0	NM_181751	236781.0	Mm.269129	NM_181751	ENSMUSG00000051209	Gpr119	-	G-protein coupled receptor 119	protein-coding	4.04	2.26	1.71	8.45	10.64	8.78	7.97	11.07	6.49	2.01	8.54	4.07
Merged-chr11-78245301-2	chr11	78245189	78245389	+	824.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009143)	promoter-TSS (NM_009143)	414.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	2.83	13.83	9.13	6.44	7.36	11.92	10.63	5.64	12.78	14.06	10.55	6.89
Merged-chr16-89864874-3	chr16	89864757	89864957	+	824.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-46505.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.27	4.53	21.68	17.7	5.32	5.02	10.96	11.5	11.41	7.03	12.06	4.07
Merged-chr1-191881383-1	chr1	191881283	191881483	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25398.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	5.25	3.77	4.56	1.21	3.27	2.82	6.98	7.21	0.98	6.03	0.5	2.19
Merged-chr14-102516901-1	chr14	102516801	102517001	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	465731.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	5.65	4.28	7.99	4.83	3.27	4.39	6.31	9.17	8.26	3.01	10.05	11.28
Merged-chr10-89407030-1	chr10	89406930	89407130	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36937.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	4.85	2.01	5.7	0.4	3.27	3.76	4.98	7.63	4.33	4.02	5.02	4.7
Merged-chr9-100606236-1	chr9	100606136	100606336	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35151.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	4.85	4.02	10.84	8.45	8.59	7.84	6.98	7.68	3.93	6.03	7.03	8.77
Merged-chr1-89302706-1	chr1	89302606	89302806	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103427.0	NR_040482	77331.0	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	0.81	1.26	4.56	4.42	8.59	8.15	7.64	10.77	2.16	5.52	6.53	4.07
Merged-chr16-55795702-4	chr16	55795664	55795864	+	823.9851070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26374.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	16.15	6.04	8.56	11.66	6.14	19.76	16.28	13.82	8.85	4.52	13.57	7.83
Merged-chr10-8683147-3	chr10	8683038	8683238	+	823.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-164313.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	10.09	6.04	17.11	8.45	14.32	5.33	3.99	9.9	11.8	5.52	14.57	9.08
Merged-chr6-116136339-3	chr6	116136221	116136421	+	823.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57053.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	8.88	15.34	6.28	13.27	8.59	13.8	8.3	20.61	18.49	13.05	10.05	11.28
Merged-chr10-81257402-3	chr10	81257253	81257453	+	823.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285854)	promoter-TSS (NM_001285854)	54.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	6.86	8.3	4.56	8.04	5.73	9.41	10.96	5.97	15.93	5.52	10.05	10.34
Merged-chr17-26462777-2	chr17	26462685	26462885	+	823.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	11.71	5.79	5.7	4.42	19.64	19.44	6.31	13.29	22.62	13.56	12.56	11.9
Merged-chr11-106796853-2	chr11	106796756	106796956	+	823.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166685, intron 4 of 18)	ID_B1|SINE|B4	7604.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	4.04	6.79	9.13	4.02	12.68	22.58	8.64	10.29	18.1	10.04	8.04	3.76
Merged-chr7-47023721-3	chr7	47023611	47023811	+	823.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15297.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	8.48	5.79	7.99	11.66	6.95	15.37	2.66	11.8	14.95	11.55	22.61	5.95
Merged-chr4-136889232-2	chr4	136889159	136889359	+	823.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007574)	TTS (NM_007574)	-3082.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	2.83	6.54	4.56	4.02	7.36	1.25	4.65	3.79	10.82	7.53	12.56	12.84
Merged-chr10-94689297-2	chr10	94689174	94689374	+	823.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	484.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	11.31	11.32	3.99	6.03	16.77	17.87	9.63	11.52	18.69	7.53	5.53	5.01
Merged-chr18-6411180-2	chr18	6411087	6411287	+	823.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79459.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	3.23	6.79	5.13	4.83	18.82	12.54	1.0	8.94	13.96	10.04	19.6	6.89
Merged-chr3-142272662-3	chr3	142272530	142272730	+	823.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-103205.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	9.29	9.81	6.85	9.25	4.5	9.72	4.32	9.62	20.06	24.6	15.07	17.86
Merged-chr11-52397594-3	chr11	52397494	52397694	+	823.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153117, intron 1 of 2)	intron (NM_153117, intron 1 of 2)	1166.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	15.75	10.82	9.7	12.47	6.55	15.05	10.96	7.21	18.1	13.56	25.12	11.28
Merged-chr3-152800203-2	chr3	152800093	152800293	+	823.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86093.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	10.5	11.57	15.4	18.5	11.45	16.62	9.3	16.85	6.49	0.5	7.03	5.95
Merged-chr17-34912284-2	chr17	34912197	34912397	+	823.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286575, intron 25 of 27)	intron (NM_001286575, intron 25 of 27)	-2169.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	2.83	2.77	6.28	3.22	8.18	7.53	1.66	5.5	13.57	5.52	16.58	7.21
Merged-chr4-124847790-3	chr4	124847709	124847909	+	823.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008636, exon 11 of 11)	3' UTR (NM_008636, exon 11 of 11)	2755.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	13.33	12.32	7.42	11.26	14.73	12.23	3.65	6.53	9.05	11.05	16.08	11.28
Merged-chr7-129501576-3	chr7	129501477	129501677	+	823.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-90286.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.86	7.8	24.53	16.49	15.14	9.41	20.59	23.52	13.57	14.56	21.1	10.02
Merged-chr9-83831322-3	chr9	83831220	83831420	+	823.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3369.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	1.62	9.06	6.28	7.24	6.14	9.09	7.97	8.69	15.34	14.56	9.55	8.77
Merged-chr18-32353314-3	chr18	32353262	32353462	+	823.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-23855.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.46	9.81	6.85	6.44	24.96	19.76	7.97	16.77	19.47	14.06	19.09	10.02
Merged-chr4-126250655-2	chr4	126250551	126250751	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	5668.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	13.73	11.07	2.28	3.22	8.59	10.03	5.65	4.12	9.05	4.02	11.05	10.02
Merged-chr5-117164738-2	chr5	117164619	117164819	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	31131.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	11.71	6.04	11.98	2.41	16.36	12.86	14.28	13.26	0.0	0.5	0.0	1.57
Merged-chr12-40543745-3	chr12	40543664	40543864	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	97711.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	12.11	6.04	12.55	14.88	10.64	12.86	4.32	13.77	15.54	20.08	8.04	7.83
Merged-chr8-121832808-1	chr8	121832708	121832908	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3239.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	4.85	5.03	7.99	0.8	12.68	11.29	6.31	6.06	6.88	3.51	4.02	5.64
Merged-chr1-179488178-2	chr1	179488081	179488281	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	29860.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	2.42	0.5	2.28	0.8	4.09	8.47	4.98	8.92	10.23	7.03	20.6	10.65
Merged-chr3-136668970-1	chr3	136668870	136669070	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1096.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	1.21	4.28	5.7	13.67	6.55	5.02	6.64	11.07	8.26	12.55	10.05	5.95
Merged-chr8-69189654-2	chr8	69189584	69189784	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19362.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	2.42	7.8	3.42	2.41	11.05	9.41	10.96	9.28	6.49	13.56	12.56	13.47
Merged-chr8-117227487-2	chr8	117227389	117227589	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29530.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	12.52	9.31	13.12	10.05	9.82	5.96	3.99	12.36	6.88	14.06	11.56	5.01
Merged-chr1-135680896-3	chr1	135680796	135680996	+	823.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39167.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	10.5	8.05	19.4	10.46	6.55	11.92	9.63	8.69	15.54	12.05	16.58	7.52
Merged-chr16-77174906-3	chr16	77174821	77175021	+	823.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154407.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	6.06	8.05	13.69	11.66	17.18	17.56	12.95	23.83	11.6	11.05	22.11	20.05
Merged-chr15-36606728-3	chr15	36606594	36606794	+	823.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2279.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	8.88	11.82	10.27	3.22	14.73	28.22	3.99	5.27	32.85	30.63	21.61	7.21
Merged-chr6-87205621-1	chr6	87205521	87205721	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	100875.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.23	2.52	3.99	4.83	7.77	0.0	9.3	10.49	7.28	5.02	7.03	1.57
Merged-chr2-173275826-1	chr2	173275726	173275926	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	707.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	4.04	3.02	0.57	1.21	8.18	0.94	6.64	7.93	4.13	4.02	10.05	4.07
Merged-chr4-144930525-1	chr4	144930425	144930625	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37388.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.06	3.27	6.28	8.45	11.45	10.03	4.65	15.2	3.54	7.03	7.03	3.76
Merged-chr1-78484605-1	chr1	78484505	78484705	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	4292.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	2.42	2.52	0.0	3.22	8.59	14.11	7.97	7.12	2.95	11.05	7.03	2.82
Merged-chr15-79658064-2	chr15	79657955	79658155	+	823.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029407, intron 1 of 17)	intron (NM_029407, intron 1 of 17)	901.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	11.31	12.32	7.99	16.09	13.91	10.66	2.33	11.13	11.41	6.53	5.02	1.25
Merged-chr1-64338105-2	chr1	64338018	64338218	+	823.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-194686.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.65	5.03	4.56	10.86	12.68	18.5	18.93	15.36	9.83	12.55	17.59	5.64
Merged-chr1-180874267-3	chr1	180874175	180874375	+	823.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18833.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	16.56	19.37	15.97	12.07	13.91	14.42	11.96	6.25	17.7	17.57	15.58	13.47
Merged-chr3-88477941-3	chr3	88477838	88478038	+	823.6611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15374.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	11.31	6.29	9.7	10.05	13.5	13.48	7.64	11.61	19.28	23.1	13.57	11.9
Merged-chr15-63965572-2	chr15	63965470	63965670	+	823.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360038, intron 2 of 11)	intron (NM_001360038, intron 2 of 11)	32496.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	13.73	7.8	6.85	8.85	13.09	7.21	5.98	12.28	19.28	14.06	16.58	14.1
Merged-chr10-125745017-4	chr10	125744935	125745135	+	823.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-221184.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	7.27	9.56	8.56	10.86	9.82	14.11	18.6	20.69	12.78	6.53	14.07	7.83
Merged-chr17-69265472-3	chr17	69265369	69265569	+	823.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 12 of 21)	intron (NM_001355736, intron 12 of 21)	11737.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	9.69	5.28	21.68	15.69	21.68	12.23	10.96	14.92	13.96	7.03	20.1	6.58
Merged-chr14-120835208-3	chr14	120835099	120835299	+	823.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75995.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.06	7.04	7.99	16.49	10.23	7.84	4.32	4.65	18.88	11.55	17.08	12.53
Merged-chr13-59867408-3	chr13	59867314	59867514	+	823.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44267.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.27	11.07	7.42	11.66	9.82	7.53	5.65	14.89	21.83	13.56	21.1	15.35
Merged-chr2-69128999-3	chr2	69128898	69129098	+	823.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6802.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	12.11	8.55	15.97	11.26	16.36	21.32	9.97	24.53	23.41	14.56	54.77	33.21
Merged-chr3-96244793-1	chr3	96244693	96244893	+	823.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-664.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	6.06	5.03	3.42	7.24	10.23	8.15	6.31	9.5	9.05	6.53	6.53	10.96
Merged-chr2-32757673-2	chr2	32757565	32757765	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290563, intron 14 of 14)	intron (NM_001290563, intron 14 of 14)	431.0	NM_152800	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	13.33	12.58	7.99	8.85	14.73	7.53	10.96	5.13	13.96	17.57	17.08	10.34
Merged-chr3-136700818-2	chr3	136700720	136700920	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	30754.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.25	5.79	6.28	10.46	18.0	12.54	18.6	15.42	8.06	11.55	19.09	8.46
Merged-chr3-83817818-2	chr3	83817707	83817907	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23801.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.86	5.79	6.85	3.22	8.18	10.35	4.98	12.17	11.6	13.56	11.56	4.7
Merged-chr6-136848010-2	chr6	136847912	136848112	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026639)	TTS (NM_026639)	9588.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	4.04	11.07	4.56	4.83	18.82	10.66	2.66	14.07	13.96	4.52	13.06	8.46
Merged-chr7-127931701-3	chr7	127931612	127931812	+	823.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001319147)	TTS (NM_001319147)	-1599.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	11.71	4.02	2.28	14.88	22.5	11.6	14.28	26.78	7.28	15.06	10.05	6.27
Merged-chr18-34391011-3	chr18	34390905	34391105	+	823.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-17590.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	10.09	13.83	9.13	8.45	12.68	29.79	13.62	13.51	12.98	20.59	15.58	17.86
Merged-chr2-181240620-3	chr2	181240527	181240727	+	823.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	1400.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	10.09	4.53	11.41	2.82	2.05	9.41	10.3	7.21	20.85	19.08	29.14	23.81
Merged-chrX-103549711-2	chrX	103549607	103549807	+	823.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	4207.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	5.25	6.79	6.85	2.01	8.59	6.59	5.98	7.91	16.13	16.57	18.09	12.22
Merged-chr10-77891161-3	chr10	77891074	77891274	+	823.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2246.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	18.17	12.83	29.09	21.72	11.45	4.39	4.65	13.35	12.78	10.54	15.07	8.46
Merged-chr3-79789110-2	chr3	79789005	79789205	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51154.0	NM_212452	381489.0	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	7.27	4.02	4.56	9.65	7.36	4.39	16.28	15.42	10.42	9.04	15.58	6.89
Merged-chr4-63119066-2	chr4	63118964	63119164	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	35108.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	12.92	5.79	9.7	4.83	2.86	14.11	7.31	7.04	7.08	9.54	11.05	11.9
Merged-chr8-26833117-2	chr8	26832949	26833149	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8626.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.81	4.53	3.99	4.02	4.09	2.2	5.98	1.91	3.15	1.51	11.56	5.33
Merged-chr19-45651669-2	chr19	45651577	45651777	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8516.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	11.31	9.06	7.99	13.67	8.18	13.48	9.63	10.26	10.03	7.03	22.11	3.76
Merged-chr17-22360769-2	chr17	22360674	22360874	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347330)	promoter-TSS (NM_001347330)	626.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	6.46	9.31	6.28	4.02	11.05	9.09	7.64	11.05	12.78	15.06	14.07	7.21
Merged-chr13-44480326-2	chr13	44480224	44480424	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40597.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.25	4.28	2.28	4.02	8.18	5.02	5.65	5.72	14.36	12.55	23.11	10.96
Merged-chr15-88539074-1	chr15	88538974	88539174	+	823.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61228.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	6.06	8.05	23.39	2.01	3.27	2.51	2.33	6.11	15.54	3.01	13.06	10.65
Merged-chr16-57393413-1	chr16	57393313	57393513	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	40136.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.04	3.02	5.7	2.41	3.27	6.27	6.64	8.72	2.75	3.01	4.52	3.45
Merged-chr1-88284397-2	chr1	88284312	88284512	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6833.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.81	4.78	10.27	1.21	9.0	1.25	8.3	5.36	6.29	14.56	7.03	9.71
Merged-chr7-115036519-1	chr7	115036419	115036619	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	85245.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	6.46	2.01	4.56	8.04	8.18	2.2	6.64	9.5	2.36	6.53	5.53	3.45
Merged-chr11-9530621-1	chr11	9530521	9530721	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 45 of 61)	CT-rich|Low_complexity|Low_complexity	338679.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.85	2.77	3.99	5.23	6.95	5.64	6.64	10.93	9.64	5.52	4.02	0.63
Merged-chr15-68053075-1	chr15	68052975	68053175	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	205781.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.48	5.03	10.84	6.84	5.73	7.21	6.98	15.34	6.49	13.05	17.59	7.52
Merged-chr3-65538596-1	chr3	65538496	65538696	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-9182.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	6.46	2.01	9.13	5.63	5.32	10.66	1.66	10.57	11.8	7.03	9.55	7.52
Merged-chr19-18600404-2	chr19	18600296	18600496	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 2 of 9)	intron (NM_017375, intron 2 of 9)	31417.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.86	4.02	14.26	9.65	5.73	3.14	9.3	15.45	4.72	2.51	14.07	1.88
Merged-chr1-97630738-1	chr1	97630638	97630838	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30938.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.23	6.29	9.13	11.66	6.14	11.6	9.97	14.8	6.29	3.01	12.06	7.52
Merged-chr3-135440795-1	chr3	135440695	135440895	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1669.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	2.42	2.01	3.42	2.41	6.95	2.2	7.64	5.58	4.72	3.01	7.03	2.51
Merged-chr10-67223008-3	chr10	67222924	67223124	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	37274.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.27	4.78	13.69	12.07	14.32	22.26	10.96	17.22	20.85	8.54	16.08	6.89
Merged-chr8-124837108-1	chr8	124837008	124837208	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25921.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	7.27	6.29	1.71	4.83	11.86	10.35	5.31	11.89	0.39	0.0	3.01	0.94
Merged-chr9-18293376-3	chr9	18293280	18293480	+	823.458313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025844, intron 1 of 10)	intron (NM_025844, intron 1 of 10)	1113.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	3.63	4.53	0.57	6.03	2.45	1.57	7.31	4.32	3.15	8.03	2.01	7.83
Merged-chr2-132180566-3	chr2	132180476	132180676	+	823.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35256.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	8.08	6.79	15.4	20.51	9.82	26.97	14.28	18.64	9.83	10.04	23.11	20.99
Merged-chr2-79865475-3	chr2	79865399	79865599	+	823.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009978, intron 11 of 12)	intron (NM_001009978, intron 11 of 12)	42900.0	NM_001009979	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	13.33	10.06	3.42	12.87	21.68	9.09	7.64	17.58	14.75	21.09	12.56	3.13
Merged-chr4-109420900-3	chr4	109420745	109420945	+	823.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	5198.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	6.06	6.04	2.85	10.46	13.09	5.02	7.97	10.93	8.46	8.03	6.53	6.27
Merged-chr13-21011320-2	chr13	21011229	21011429	+	823.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	61970.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	10.5	5.03	19.97	16.49	3.27	5.02	2.33	8.41	11.01	4.02	15.58	8.14
Merged-chr1-192091000-3	chr1	192090893	192091093	+	823.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	1606.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	6.46	15.34	19.97	10.46	3.68	10.66	9.3	4.37	14.95	11.55	8.04	8.77
Merged-chr16-55811987-3	chr16	55811885	55812085	+	823.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	10153.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	25.44	10.31	17.11	9.25	14.73	27.59	5.65	13.49	14.55	11.05	14.07	7.52
Merged-chr8-126583812-1	chr8	126583712	126583912	+	823.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9624.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	15.34	9.06	16.54	9.25	9.0	15.05	11.63	19.99	16.33	4.52	17.59	10.65
Merged-chr13-111461531-1	chr13	111461431	111461631	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361926, intron 2 of 10)	intron (NM_001361926, intron 2 of 10)	28596.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	8.88	8.05	10.27	6.44	11.86	6.9	2.66	6.39	10.03	9.54	8.04	9.71
Merged-chr13-60435139-1	chr13	60435039	60435239	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-166808.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.42	6.04	5.13	7.24	12.68	10.03	7.64	8.78	8.46	6.03	7.54	1.57
Merged-chr4-155710830-1	chr4	155710730	155710930	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	6015.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	4.04	1.01	5.13	1.61	5.32	10.03	0.66	10.09	9.64	2.51	5.53	5.01
Merged-chr13-91515141-1	chr13	91515041	91515241	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	54044.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	7.67	6.04	14.83	6.44	2.05	8.15	7.31	9.11	6.88	0.5	8.04	4.39
Merged-chr11-30196024-1	chr11	30195924	30196124	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	2233.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.85	3.27	5.13	4.83	9.0	10.03	9.97	10.4	5.7	1.51	1.0	1.57
Merged-chr12-84803876-3	chr12	84803769	84803969	+	823.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	30599.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	16.96	12.83	14.83	13.27	11.45	21.95	7.97	7.04	8.85	7.53	13.57	9.71
Merged-chr14-21999710-3	chr14	21999612	21999812	+	823.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-10111.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	11.31	5.79	16.54	9.65	6.14	17.25	15.61	15.9	14.95	10.54	16.08	16.29
Merged-chr10-39774663-3	chr10	39774568	39774768	+	823.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	42508.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	16.56	8.8	9.7	8.85	5.73	9.41	11.29	13.49	12.59	5.52	19.6	13.16
Merged-chr14-84454263-2	chr14	84454165	84454365	+	823.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013753, intron 1 of 3)	intron (NM_001013753, intron 1 of 3)	10702.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	8.08	6.29	3.42	16.89	19.64	29.48	28.57	32.78	8.46	10.54	12.06	5.95
Merged-chr12-4572044-3	chr12	4571937	4572137	+	823.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20971.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	8.48	5.79	21.11	12.47	13.91	8.47	9.97	17.16	13.37	2.51	17.59	9.4
Merged-chr2-27026957-3	chr2	27026846	27027046	+	823.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177627, intron 2 of 8)	intron (NM_001177627, intron 2 of 8)	1052.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	6.06	7.04	6.85	6.44	11.05	21.95	9.63	8.33	12.98	8.03	16.08	4.39
Merged-chr14-115017888-3	chr14	115017784	115017984	+	823.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25787.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	16.15	12.07	10.84	12.07	9.0	11.6	12.29	11.55	9.24	12.55	18.09	11.28
Merged-chr6-21973655-3	chr6	21973582	21973782	+	823.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023626, exon 12 of 12)	exon (NM_023626, exon 12 of 12)	-12228.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	11.71	5.03	11.41	15.28	4.5	6.59	5.31	16.93	3.74	2.51	22.11	11.9
Merged-chr13-95563725-3	chr13	95563586	95563786	+	823.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38446.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	15.75	12.32	19.4	22.12	6.55	9.72	5.65	6.25	6.88	11.05	4.52	5.01
Merged-chr11-103332717-3	chr11	103332595	103332795	+	823.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133715, exon 16 of 16)	3' UTR (NM_133715, exon 16 of 16)	12007.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	14.54	18.11	6.28	7.64	10.23	26.65	7.97	13.46	12.98	11.05	10.05	16.92
Merged-chr16-14159971-3	chr16	14159883	14160083	+	823.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081154)	promoter-TSS (NM_001081154)	357.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	12.11	7.29	0.57	8.04	14.73	4.08	4.65	9.17	11.6	17.57	14.57	16.29
Merged-chr4-108295366-3	chr4	108295248	108295448	+	823.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	5742.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	10.9	14.34	3.42	7.64	6.95	8.47	4.98	9.59	8.46	4.02	18.59	9.08
Merged-chr1-151683201-3	chr1	151683079	151683279	+	823.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	71548.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	10.5	8.3	4.56	4.02	14.73	23.52	4.32	10.82	10.03	12.05	14.07	9.71
Merged-chr3-41599925-3	chr3	41599827	41600027	+	823.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 6 of 10)	B3|SINE|B2	35047.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	17.36	8.3	15.97	7.24	11.86	11.92	10.3	17.69	20.06	8.54	17.59	14.41
Merged-chr19-38846614-2	chr19	38846518	38846718	+	823.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145952, intron 1 of 12)	intron (NM_145952, intron 1 of 12)	10039.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	15.34	11.07	9.13	13.27	8.18	11.92	19.6	20.66	5.51	0.5	9.04	1.25
Merged-chr14-79034686-2	chr14	79034575	79034775	+	823.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027906, intron 20 of 44)	intron (NM_027906, intron 20 of 44)	164515.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	0.0	9.31	4.56	10.86	10.23	8.15	11.96	12.06	0.59	0.0	1.0	4.07
Merged-chr12-80325261-2	chr12	80325166	80325366	+	823.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64885.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	15.75	9.81	7.99	9.65	5.32	4.7	4.32	10.82	13.57	8.03	4.52	8.46
Merged-chr6-100366006-3	chr6	100365908	100366108	+	823.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78650.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	8.88	17.1	13.69	19.31	12.27	15.99	10.63	19.91	11.6	10.04	20.1	15.98
Merged-chr1-177644376-3	chr1	177644277	177644477	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1434.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	11.31	7.55	6.85	1.61	6.14	13.8	12.29	1.93	16.72	9.54	12.56	6.89
Merged-chr14-47542538-3	chr14	47542496	47542696	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	25838.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	2.02	3.27	7.42	9.65	6.95	2.82	8.64	6.87	6.69	8.54	12.06	7.83
Merged-chr6-112718200-3	chr6	112718087	112718287	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-21517.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.44	8.05	18.25	20.51	20.86	12.54	24.91	22.26	10.42	7.53	15.58	11.59
Merged-chr1-57852856-3	chr1	57852754	57852954	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	7283.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	13.33	12.58	17.11	8.04	36.41	43.27	11.29	27.22	11.01	8.03	14.07	4.07
Merged-chr4-155784279-3	chr4	155784195	155784395	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033394, exon 2 of 2)	exon (NM_001033394, exon 2 of 2)	1579.0	NM_001033394	320587.0	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	17.36	9.56	9.7	10.46	12.68	10.98	19.6	9.03	8.85	12.55	12.56	17.54
Merged-chr10-63309193-3	chr10	63309094	63309294	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	29841.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	14.94	10.56	4.56	5.63	9.41	14.11	2.33	7.04	14.55	11.55	13.06	10.34
Merged-chr3-61688480-3	chr3	61688393	61688593	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	323986.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	9.69	3.77	7.42	17.29	13.5	15.99	14.62	21.48	12.19	19.58	15.07	10.34
Merged-chrX-74244786-3	chrX	74244660	74244860	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290421, intron 1 of 46)	intron (NM_001290421, intron 1 of 46)	1774.0	NM_010227	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	2.42	7.8	14.83	9.65	6.14	6.27	3.99	9.98	18.69	32.64	23.62	20.05
Merged-chr5-135722352-3	chr5	135722241	135722441	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 2 of 15)	intron (NM_008898, intron 2 of 15)	13548.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	10.09	5.53	2.28	13.27	13.09	11.6	6.98	8.36	20.26	13.05	17.08	10.65
Merged-chr9-52168891-3	chr9	52168775	52168975	+	823.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-764.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	22.21	26.66	10.84	23.33	5.73	12.54	8.97	8.05	11.21	7.03	9.04	5.33
Merged-chr11-34043023-3	chr11	34042935	34043135	+	823.061096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-3893.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	12.52	8.8	20.54	13.67	9.41	17.87	11.96	17.92	22.03	13.05	11.05	12.84
Merged-chr13-56296467-3	chr13	56296364	56296564	+	823.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019568)	promoter-TSS (NM_019568)	87.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	11.71	8.8	9.13	19.31	26.59	17.56	15.61	23.27	16.33	10.54	16.58	13.78
Merged-chr15-90963490-3	chr15	90963375	90963575	+	823.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016705, intron 22 of 32)	GA-rich|Low_complexity|Low_complexity	-64999.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	14.13	6.04	6.85	15.69	24.14	12.23	7.64	15.06	13.18	13.56	14.07	7.83
Merged-chr5-5320973-3	chr5	5320875	5321075	+	823.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54907.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	12.52	11.82	14.26	18.1	11.45	2.51	5.65	9.53	13.37	20.08	10.05	8.77
Merged-chr11-23124585-3	chr11	23124488	23124688	+	823.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-27552.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	11.71	8.55	11.98	12.87	9.82	14.11	15.28	11.86	22.42	11.05	12.56	13.78
Merged-chr3-109264711-1	chr3	109264611	109264811	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75972.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.46	4.02	4.56	9.25	12.68	1.25	5.98	10.04	8.46	5.52	12.56	5.01
Merged-chr3-41260240-1	chr3	41260140	41260340	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-177194.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	1.21	1.01	0.0	4.83	4.09	1.88	8.3	6.59	0.39	0.0	0.0	1.88
Merged-chr6-94532313-1	chr6	94532213	94532413	+	823.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 3 of 9)	Lx8|LINE|L1	31999.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.81	0.25	0.0	5.63	0.82	1.88	0.66	0.95	6.69	3.01	26.63	13.16
Merged-chr15-36282151-1	chr15	36282051	36282251	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357631, intron 1 of 7)	intron (NM_001357631, intron 1 of 7)	996.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	5.25	3.27	11.41	1.61	3.27	5.96	1.0	8.13	3.54	2.01	9.04	3.76
Merged-chr13-33951497-1	chr13	33951397	33951597	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-13162.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	1.62	4.28	5.7	3.22	4.5	3.45	9.97	6.7	3.93	4.52	1.0	2.19
Merged-chr3-8770908-1	chr3	8770808	8771008	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103870.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.04	0.75	1.14	6.44	2.45	2.82	7.31	6.87	0.39	1.0	1.51	1.57
Merged-chr16-70586772-1	chr16	70586672	70586872	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-29653.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0	2.01	4.56	4.42	4.09	3.45	7.64	6.84	2.16	0.0	1.0	0.94
Merged-chr1-16519863-3	chr1	16519732	16519932	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025303)	promoter-TSS (NM_025303)	-530.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	16.96	9.06	11.98	18.9	13.91	15.37	15.61	12.87	10.03	10.04	8.04	6.58
Merged-chrX-164590384-1	chrX	164590284	164590484	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	92481.0	NM_027027	69299.0	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding	4.04	5.53	11.41	3.22	4.5	3.76	6.64	9.25	3.34	4.02	3.01	0.94
Merged-chr13-110471752-2	chr13	110471644	110471844	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76700.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.62	4.02	6.28	3.22	10.64	8.15	8.3	10.49	12.19	5.52	22.61	13.16
Merged-chr17-23187367-2	chr17	23187272	23187472	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357697, intron 3 of 5)	intron (NM_001357697, intron 3 of 5)	5856.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	5.25	4.02	3.42	15.28	3.27	7.84	2.33	6.9	14.36	13.56	22.11	6.58
Merged-chr17-56849020-3	chr17	56848954	56849154	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039114, intron 10 of 14)	B1_Mus1|SINE|Alu	-18046.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	14.94	9.56	14.26	13.67	9.41	11.92	3.65	3.95	11.6	11.55	18.09	7.83
Merged-chr19-10833836-3	chr19	10833754	10833954	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3796.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	4.44	4.53	11.41	13.67	5.73	11.92	11.63	11.36	14.16	13.05	16.08	8.14
Merged-chrX-103477660-1	chrX	103477560	103477760	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_001570, exon 1 of 8)	non-coding (NR_001570, exon 1 of 8)	5573.0	NR_001570	213742.0	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	4.44	5.03	0.0	7.24	7.36	5.64	3.99	5.21	7.47	5.52	6.03	2.19
Merged-chr15-13370900-1	chr15	13370800	13371000	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-197225.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.81	3.77	4.56	4.02	3.68	5.33	4.98	6.45	7.87	5.02	0.5	0.63
Merged-chr1-77464299-1	chr1	77464199	77464399	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	32469.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.42	4.02	4.56	11.66	16.36	11.6	13.62	9.95	7.08	3.01	5.02	0.94
Merged-chr12-102694991-3	chr12	102694883	102695083	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9886.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	5.65	9.06	10.84	8.04	11.45	11.6	8.64	9.79	11.6	12.05	14.07	13.78
Merged-chr16-21616007-2	chr16	21615907	21616107	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	B3|SINE|B2	78658.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.04	6.04	9.7	11.66	7.77	10.03	5.65	10.51	10.42	6.03	15.07	10.96
Merged-chr10-35347588-1	chr10	35347488	35347688	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	864188.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	4.04	1.01	2.85	3.22	11.05	9.72	5.31	15.22	9.24	8.03	12.06	5.64
Merged-chr7-89405105-1	chr7	89405005	89405205	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360746)	promoter-TSS (NM_001360746)	739.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	5.65	3.02	0.57	3.62	6.95	7.53	12.29	9.7	2.75	1.51	6.03	5.64
Merged-chrX-166499680-1	chrX	166499580	166499780	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001007577)	TTS (NM_001007577)	10798.0	NM_001007577	245695.0	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	1.62	3.27	2.85	5.63	8.18	10.03	2.66	11.33	5.11	15.06	5.02	2.19
Merged-chr18-21593943-1	chr18	21593843	21594043	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081403, intron 2 of 7)	intron (NM_001081403, intron 2 of 7)	-57622.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	3.23	3.52	6.28	1.61	3.27	4.39	8.3	5.78	0.98	0.0	0.5	0.31
Merged-chr4-35950149-1	chr4	35950049	35950249	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	MLT1G1|LTR|ERVL-MaLR	-104945.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	2.42	2.77	1.14	2.41	13.91	7.21	7.97	15.36	8.26	7.53	4.02	8.46
Merged-chr4-48592889-4	chr4	48592719	48592919	+	822.979187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7645.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	6.46	2.77	1.14	4.83	2.86	1.88	7.64	1.77	3.34	4.02	2.01	5.95
Merged-chr5-53591189-3	chr5	53591089	53591289	+	822.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359152, intron 1 of 9)	CpG	703.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	5.25	6.54	2.28	1.61	9.82	7.84	7.64	6.14	8.85	12.55	17.59	12.53
Merged-chr18-75473388-3	chr18	75473269	75473469	+	822.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-41276.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	21.8	15.34	12.55	19.31	7.77	10.66	11.96	18.56	8.06	4.02	8.04	6.89
Merged-chr14-64050630-3	chr14	64050537	64050737	+	822.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34773.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	12.11	8.3	15.97	12.07	10.64	23.2	11.29	20.69	13.57	9.04	7.03	7.83
Merged-chr15-78851975-3	chr15	78851873	78852073	+	822.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025622, intron 2 of 3)	intron (NM_025622, intron 2 of 3)	3556.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	9.29	10.82	5.13	4.83	8.59	10.98	4.32	9.87	25.57	35.15	23.62	12.22
Merged-chr13-94794290-3	chr13	94794197	94794397	+	822.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	5354.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	10.9	6.29	10.27	12.47	12.27	8.15	4.32	8.52	10.23	2.01	21.1	9.08
Merged-chr3-9751665-3	chr3	9751565	9751765	+	822.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	82014.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	8.88	10.82	22.25	28.56	18.41	5.33	16.28	24.59	7.67	10.04	18.09	9.4
Merged-chr11-78323090-3	chr11	78323063	78323263	+	822.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303423)	promoter-TSS (NM_001303423)	90.0	NM_001303423	11676.0	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	6.86	9.06	3.42	3.22	11.86	20.38	3.65	4.93	12.98	8.54	12.56	5.95
Merged-chr4-59821722-2	chr4	59821613	59821813	+	822.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	L1MA9|LINE|L1	16063.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	10.5	3.02	4.56	0.8	8.59	5.02	4.98	9.76	21.05	12.55	13.06	17.54
Merged-chr19-9110407-3	chr19	9110296	9110496	+	822.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22440.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	8.48	6.54	12.55	7.64	8.59	14.74	8.3	10.21	16.72	3.01	16.58	5.64
Merged-chr10-62187122-3	chr10	62187011	62187211	+	822.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_197996, exon 8 of 8)	3' UTR (NM_197996, exon 8 of 8)	7116.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	14.13	9.56	13.69	13.27	15.96	8.47	12.29	11.24	12.0	10.54	11.05	9.4
Merged-chr2-130491794-2	chr2	130491679	130491879	+	822.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	41501.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	5.65	6.79	7.42	4.42	60.55	96.27	45.84	57.17	10.23	8.03	6.53	8.46
Merged-chr11-44516450-2	chr11	44516353	44516553	+	822.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2511.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.44	4.28	1.14	3.22	5.73	15.37	2.66	6.9	14.95	14.06	19.09	5.95
Merged-chr18-73749606-2	chr18	73749514	73749714	+	822.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	4865.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	7.67	8.3	3.42	8.45	5.73	13.8	15.94	13.68	7.28	6.03	17.08	4.39
Merged-chr2-120111053-3	chr2	120110952	120111152	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 3 of 5)	MIR|SINE|MIR	43523.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	9.69	8.55	7.42	16.09	13.5	18.5	7.64	19.85	6.29	17.07	15.58	9.71
Merged-chr2-133020664-3	chr2	133020570	133020770	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74634.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	10.5	9.31	3.99	12.07	9.41	6.27	3.32	18.79	5.7	16.07	18.09	20.05
Merged-chr5-100557204-3	chr5	100557111	100557311	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14994.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	7.27	8.05	1.14	11.66	6.95	7.53	10.96	14.3	66.87	60.75	78.39	38.85
Merged-chr13-113022657-1	chr13	113022557	113022757	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12722.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	21.0	13.83	18.25	12.47	1.64	0.0	0.0	0.39	0.39	0.5	2.01	0.0
Merged-chr7-44561220-3	chr7	44561128	44561328	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7263.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	13.33	12.32	20.54	4.42	8.18	15.05	3.65	10.74	9.83	17.07	15.58	7.83
Merged-chr6-113469286-3	chr6	113469175	113469375	+	822.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145826, intron 14 of 14)	intron (NM_145826, intron 14 of 14)	-2180.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	10.09	8.3	6.85	5.63	22.09	17.25	12.29	16.21	15.93	17.07	14.57	7.21
Merged-chr1-88262494-2	chr1	88262401	88262601	+	822.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040291)	TTS (NR_040291)	6907.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	8.48	5.03	6.85	3.22	23.32	6.27	6.98	10.29	9.83	8.03	15.07	7.52
Merged-chr11-120571295-3	chr11	120571162	120571362	+	822.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011032, intron 2 of 10)	intron (NM_011032, intron 2 of 10)	1991.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	7.67	6.04	6.28	6.84	49.09	75.57	42.85	61.88	11.41	7.53	13.57	4.07
Merged-chr11-54762854-3	chr11	54762766	54762966	+	822.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	24837.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	8.08	10.56	12.55	10.86	18.0	26.65	13.95	15.08	12.59	11.55	8.04	10.34
Merged-chr19-61017672-2	chr19	61017579	61017779	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	123161.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.46	5.28	4.56	8.45	15.96	14.74	13.95	12.31	12.39	12.55	20.6	4.07
Merged-chr12-54791569-2	chr12	54791479	54791679	+	822.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026998, intron 2 of 13)	intron (NM_026998, intron 2 of 13)	4083.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	9.69	7.04	14.26	18.5	19.64	19.44	18.93	18.03	5.7	6.53	8.54	9.08
Merged-chr15-59774233-1	chr15	59774133	59774333	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20726.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.42	5.53	16.54	9.25	11.86	5.96	26.24	18.11	6.88	12.05	29.65	9.08
Merged-chr2-75609683-2	chr2	75609609	75609809	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49550.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	2.02	3.52	5.13	2.82	4.91	8.47	7.97	6.81	16.13	16.57	26.13	10.02
Merged-chr11-116648747-1	chr11	116648647	116648847	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	5566.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	8.08	4.78	2.85	7.24	10.64	6.9	4.32	6.95	2.75	3.51	2.01	3.76
Merged-chr5-109845096-3	chr5	109844996	109845196	+	822.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10954.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	5.65	5.79	7.99	16.89	11.86	11.29	13.29	13.01	32.85	53.73	62.31	33.21
Merged-chrX-73571289-3	chrX	73571188	73571388	+	822.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177236, exon 21 of 21)	3' UTR (NM_177236, exon 21 of 21)	-68153.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	16.96	5.79	15.4	10.46	11.45	15.37	11.96	12.08	17.51	5.02	12.06	5.95
Merged-chr5-21043099-2	chr5	21043007	21043207	+	822.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-7860.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	2.83	3.02	5.7	2.82	18.41	9.72	10.3	6.95	12.78	16.57	18.09	9.08
Merged-chr15-79224884-3	chr15	79224796	79224996	+	822.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4277.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	11.71	8.8	9.13	7.64	20.46	28.22	9.3	11.41	14.36	35.65	18.59	11.28
Merged-chr15-75090038-1	chr15	75089938	75090138	+	822.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21899.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	4.04	4.28	6.28	6.84	6.14	10.03	5.31	3.36	12.98	19.08	17.59	14.1
Merged-chr6-116458980-3	chr6	116458878	116459078	+	822.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	2200.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	8.08	4.53	14.83	13.27	17.18	9.09	13.62	25.23	14.75	12.55	23.11	10.65
Merged-chr5-32721106-1	chr5	32721006	32721206	+	822.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25236.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.65	5.03	1.71	2.82	16.36	15.68	8.64	4.4	0.79	0.0	0.0	0.63
Merged-chr1-97633090-3	chr1	97632998	97633198	+	822.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28578.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	10.09	5.79	11.41	17.29	11.05	17.25	8.64	14.64	12.98	5.52	22.61	8.46
Merged-chr7-73546721-1	chr7	73546621	73546821	+	822.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037569, intron 4 of 4)	intron (NR_037569, intron 4 of 4)	-4975.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	1.62	5.03	1.14	1.61	9.41	5.96	5.98	9.59	5.51	5.02	8.04	4.39
Merged-chr2-52573708-3	chr2	52573676	52573876	+	822.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-15165.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	8.48	8.3	7.42	16.89	4.09	4.7	6.98	8.27	6.29	10.54	8.54	3.45
Merged-chr6-143139676-3	chr6	143139546	143139746	+	822.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	14285.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	9.29	6.79	13.69	14.48	7.36	11.29	13.95	26.66	14.16	8.54	13.06	9.4
Merged-chr16-76002495-2	chr16	76002372	76002572	+	822.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155447, intron 2 of 3)	intron (NR_155447, intron 2 of 3)	1688.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	4.85	5.53	12.55	8.45	11.05	6.59	11.96	11.44	9.83	14.56	13.57	5.95
Merged-chr12-17693148-3	chr12	17693060	17693260	+	822.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	2351.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.42	4.53	18.25	13.27	6.95	9.41	1.99	13.57	11.21	7.03	11.56	6.58
Merged-chr2-27504650-1	chr2	27504550	27504750	+	822.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10497.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.81	5.03	2.28	3.62	8.18	11.29	12.62	7.51	2.16	1.51	8.04	5.64
Merged-chr13-48966179-3	chr13	48966080	48966280	+	822.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1648.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	10.09	8.55	14.26	3.62	4.5	10.35	11.96	13.77	20.65	10.54	25.63	5.01
Merged-chr16-55781396-3	chr16	55781275	55781475	+	822.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40763.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	11.31	11.82	14.26	10.86	4.5	12.54	2.99	18.84	19.08	11.55	13.57	11.9
Merged-chr1-143998078-3	chr1	143997949	143998149	+	822.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6100.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	13.73	12.07	10.27	15.69	13.91	12.54	4.65	11.27	7.87	14.06	2.01	4.7
Merged-chr4-120061903-2	chr4	120061795	120061995	+	822.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-99311.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.23	2.26	9.7	3.22	12.27	19.13	7.64	18.76	13.37	17.57	17.08	6.58
Merged-chr14-27142869-2	chr14	27142750	27142950	+	822.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1143.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.04	5.53	5.7	5.23	6.55	10.35	12.95	11.07	12.98	5.02	13.57	6.89
Merged-chr9-118609481-2	chr9	118609389	118609589	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2780.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.04	1.01	1.14	9.25	1.23	5.02	6.98	6.76	6.49	6.53	16.08	9.4
Merged-chr14-31434509-1	chr14	31434409	31434609	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011894, intron 1 of 8)	intron (NM_011894, intron 1 of 8)	1591.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.27	5.03	1.71	5.63	6.55	12.86	7.31	5.8	6.49	1.51	13.06	3.45
Merged-chr3-84675864-1	chr3	84675764	84675964	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	9672.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.44	0.25	1.14	0.4	9.0	3.45	5.31	14.58	2.95	1.0	3.52	2.19
Merged-chr14-120830554-2	chr14	120830476	120830676	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-80618.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	2.42	0.75	0.0	0.4	12.27	7.21	3.99	6.14	16.13	3.51	10.55	2.51
Merged-chr18-13122304-2	chr18	13122208	13122408	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115318.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.63	4.53	2.28	9.65	9.41	2.51	9.63	7.79	9.83	2.51	12.06	6.58
Merged-chr9-58210163-3	chr9	58210087	58210287	+	822.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5868.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	10.9	9.81	15.97	11.26	13.5	10.03	9.97	15.53	12.0	8.03	11.56	8.46
Merged-chr17-12367594-1	chr17	12367494	12367694	+	822.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11015.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	1.62	3.02	1.14	1.61	2.45	17.56	2.99	4.21	13.77	10.04	21.1	7.52
Merged-chrX-23694328-2	chrX	23694225	23694425	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	1274.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	4.85	5.53	2.28	3.22	6.55	4.08	2.99	9.17	9.64	2.51	13.57	5.01
Merged-chr8-94184512-3	chr8	94184402	94184602	+	822.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5413.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	10.5	5.28	13.69	12.07	10.23	15.68	8.97	12.79	13.57	18.08	14.07	15.04
Merged-chr3-144498551-1	chr3	144498451	144498651	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	71665.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	1.62	2.77	6.85	6.84	2.45	0.63	9.3	13.77	2.56	10.04	2.01	2.82
Merged-chr1-170608802-1	chr1	170608702	170608902	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18953.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	6.86	5.03	5.7	1.21	7.77	3.76	6.98	4.32	6.49	6.53	6.03	2.19
Merged-chr15-5607686-3	chr15	5607521	5607721	+	822.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111303.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	7.27	5.79	6.28	6.03	11.86	12.23	15.28	17.92	17.11	13.05	14.57	12.22
Merged-chr6-70804787-3	chr6	70804683	70804883	+	822.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12608.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	9.69	6.04	6.28	13.67	12.68	13.17	10.3	12.5	17.7	19.08	18.09	14.41
Merged-chr15-80564353-3	chr15	80564261	80564461	+	822.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3891.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	21.8	11.07	22.82	10.05	11.05	9.41	15.28	13.65	15.14	15.06	14.07	8.46
Merged-chr5-24686847-2	chr5	24686706	24686906	+	822.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305264, intron 1 of 14)	B1_Mur2|SINE|Alu	991.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	5.25	2.26	0.57	4.42	6.14	10.98	3.99	2.13	17.31	9.04	12.56	6.58
Merged-chr4-136149729-6	chr4	136149589	136149789	+	822.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	5867.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	16.56	3.02	6.85	3.22	6.95	10.98	5.31	2.27	7.67	3.51	6.53	5.01
Merged-chr5-121546743-3	chr5	121546626	121546826	+	822.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-834.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	10.09	8.05	3.99	9.25	13.5	9.09	5.31	11.02	11.6	8.54	14.57	3.45
Merged-chr1-37860528-3	chr1	37860443	37860643	+	822.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290720, intron 1 of 17)	ORR1B2|LTR|ERVL-MaLR	4539.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	10.9	10.06	4.56	8.04	14.32	20.7	9.3	11.8	18.88	13.56	18.59	16.92
Merged-chr8-115046650-3	chr8	115046558	115046758	+	822.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	607006.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	6.86	9.56	25.1	14.08	13.09	10.03	7.31	16.6	17.31	9.04	18.59	9.4
Merged-chr3-52512971-2	chr3	52512873	52513073	+	822.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3991.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	12.11	7.04	11.98	19.31	5.32	6.9	8.97	18.11	7.47	4.52	18.59	9.4
Merged-chr11-51900012-2	chr11	51899905	51900105	+	822.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-42375.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	1.62	2.77	5.7	5.63	9.0	12.54	2.99	9.84	8.26	7.03	7.03	7.52
Merged-chr2-91954024-2	chr2	91953918	91954118	+	822.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-3670.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	9.69	8.3	5.13	11.26	15.14	12.23	7.31	10.26	7.28	6.53	5.53	9.08
Merged-chr8-109607816-3	chr8	109607707	109607907	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020046, intron 1 of 8)	B3A|SINE|B2	866.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	10.9	10.06	5.7	7.64	9.82	13.17	9.63	12.03	12.19	19.58	4.52	9.4
Merged-chr9-95567158-3	chr9	95567071	95567271	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7354.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	8.08	6.54	1.71	8.04	15.14	16.62	10.96	15.42	14.95	14.06	17.08	9.4
Merged-chr8-123110842-1	chr8	123110742	123110942	+	822.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5867.0	NR_106047	102465654.0		NR_106047	ENSMUSG00000098550	Mir7079	Gm27278|mmu-mir-7079	microRNA 7079	ncRNA	7.27	2.52	2.85	1.21	6.95	6.59	2.33	4.15	14.36	13.56	13.57	5.95
Merged-chr11-58867225-3	chr11	58867117	58867317	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172403)	promoter-TSS (NM_172403)	-23.0	NM_172403	69944.0	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	14.54	3.77	21.68	4.42	13.09	12.23	3.65	8.83	8.06	7.53	15.58	4.39
Merged-chr19-16107905-1	chr19	16107805	16108005	+	822.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24926.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	1.62	3.52	0.0	4.83	5.32	1.88	1.99	1.99	15.14	17.07	13.06	5.64
Merged-chr14-120741847-3	chr14	120741751	120741951	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169343.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	4.85	4.53	12.55	13.67	15.14	13.17	38.53	47.3	12.19	15.06	16.58	15.98
Merged-chr2-59194788-1	chr2	59194688	59194888	+	822.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	33938.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.85	3.27	3.99	6.84	6.95	6.59	6.64	16.26	3.93	2.51	6.03	5.01
Merged-chr1-154062778-1	chr1	154062678	154062878	+	822.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138409.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.81	1.51	6.85	4.83	5.73	2.51	6.98	3.45	0.79	0.0	0.0	1.25
Merged-chr17-34280483-1	chr17	34280383	34280583	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7288.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	5.25	24.15	17.68	10.86	0.0	1.57	0.66	0.0	5.7	2.01	0.0	4.07
Merged-chr15-38661077-3	chr15	38660960	38661160	+	822.327759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-844.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	12.92	11.57	12.55	6.44	8.18	13.48	5.31	10.63	7.87	11.55	14.07	9.71
Merged-chr10-80317204-3	chr10	80317131	80317331	+	822.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	3317.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	4.85	13.58	7.42	9.25	6.14	7.21	5.98	6.7	16.13	22.09	20.6	12.22
Merged-chr7-65421652-3	chr7	65421484	65421684	+	822.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50340.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	9.29	3.27	7.99	10.05	3.68	1.25	4.98	6.53	6.1	2.01	7.54	4.7
Merged-chr13-85376518-3	chr13	85376369	85376569	+	822.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86983.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.04	5.03	6.28	7.64	6.14	8.78	10.96	9.28	11.6	19.58	10.55	10.96
Merged-chr1-9799156-3	chr1	9799063	9799263	+	822.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	1033.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	13.73	8.55	14.26	9.65	10.64	14.11	6.98	10.21	11.8	9.04	15.58	13.78
Merged-chr3-144695457-2	chr3	144695346	144695546	+	822.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	24889.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.27	2.01	1.71	5.63	10.64	8.78	9.63	20.72	13.57	13.56	13.57	15.66
Merged-chr5-43861339-2	chr5	43861237	43861437	+	822.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7472.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.42	5.28	1.14	9.65	11.05	13.48	12.95	13.74	7.87	16.57	12.06	6.27
Merged-chr8-90961774-3	chr8	90961677	90961877	+	822.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 4 of 39)	intron (NM_177224, intron 4 of 39)	29528.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	12.52	11.32	10.27	11.66	19.23	13.17	13.29	20.78	12.59	25.11	11.05	5.64
Merged-chr2-77275290-3	chr2	77275194	77275394	+	822.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5298.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	8.88	5.53	15.97	8.04	14.32	11.29	12.62	14.69	15.34	14.56	21.61	16.29
Merged-chr10-80340404-3	chr10	80340277	80340477	+	822.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104339, exon 12 of 12)	non-coding (NR_104339, exon 12 of 12)	8071.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	5.65	14.09	14.83	8.85	15.55	19.13	19.6	8.52	13.77	11.55	14.07	4.39
Merged-chr1-74243018-3	chr1	74242906	74243106	+	822.205566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	ID_B1|SINE|B4	6489.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	15.34	10.56	18.25	16.49	11.45	6.9	5.65	10.63	8.85	13.05	10.55	10.65
Merged-chr3-101494060-3	chr3	101493948	101494148	+	822.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110659.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	13.33	5.79	22.25	7.64	9.0	11.29	3.99	12.87	12.59	16.07	16.08	10.02
Merged-chr8-64944999-3	chr8	64944917	64945117	+	822.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2168.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	6.86	14.34	11.98	4.02	4.5	19.44	9.3	7.29	11.6	9.04	12.06	8.77
Merged-chr8-105349103-4	chr8	105349029	105349229	+	822.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081332, exon 1 of 16)	5' UTR (NM_001081332, exon 1 of 16)	871.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	15.34	9.06	9.13	4.42	10.64	5.02	4.65	4.63	7.87	7.03	2.01	5.33
Merged-chr7-101882494-3	chr7	101882390	101882590	+	822.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1165.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	6.86	9.31	6.85	10.86	8.18	6.59	10.3	13.88	5.31	6.03	14.57	11.9
Merged-chr5-99578897-3	chr5	99578805	99579005	+	822.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	150155.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	10.5	11.57	2.85	8.85	15.14	16.93	5.31	9.87	16.72	20.59	16.58	10.96
Merged-chr16-49946926-2	chr16	49946811	49947011	+	822.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8919.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	8.48	4.28	13.69	14.48	10.23	9.09	15.94	11.78	15.74	8.54	19.6	9.08
Merged-chr2-153234937-2	chr2	153234839	153235039	+	822.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018807, intron 2 of 2)	Charlie15a|DNA|hAT-Charlie	6419.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	12.11	18.61	26.24	9.65	1.64	4.7	4.32	1.93	17.9	12.05	8.04	8.14
Merged-chr10-99085099-3	chr10	99085007	99085207	+	822.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21975.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	4.44	7.8	5.13	8.85	15.14	12.23	6.31	9.36	17.51	19.08	23.11	9.4
Merged-chr18-74961332-3	chr18	74961223	74961423	+	822.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-60.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	6.86	11.07	11.98	3.22	12.27	12.23	8.97	11.38	18.29	6.03	13.57	5.01
Merged-chr6-72348551-3	chr6	72348493	72348693	+	822.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026696, exon 3 of 4)	exon (NM_026696, exon 3 of 4)	1276.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	6.46	4.53	14.26	10.46	3.27	5.64	1.99	7.88	15.74	7.03	15.07	4.39
Merged-chr4-83306924-3	chr4	83306823	83307023	+	822.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	RSINE1|SINE|B4	17266.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.65	8.55	14.83	8.85	14.73	8.78	19.27	25.49	26.75	11.05	22.61	17.86
Merged-chr4-119167844-2	chr4	119167743	119167943	+	822.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6013.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	10.5	9.06	3.99	5.63	0.82	8.15	0.66	2.02	12.0	16.57	26.63	13.47
Merged-chr11-121801368-3	chr11	121801283	121801483	+	822.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-28835.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	9.69	7.8	18.25	8.85	7.36	10.66	17.27	18.39	16.13	4.02	27.64	10.96
Merged-chr12-112145443-3	chr12	112145425	112145625	+	822.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-683.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	3.63	9.31	5.7	10.86	5.73	10.66	3.32	8.55	6.49	10.54	3.01	6.89
Merged-chr14-20873523-3	chr14	20873423	20873623	+	822.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36861.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	13.33	14.34	5.7	5.63	9.41	7.21	4.98	9.5	16.92	19.08	14.07	15.66
Merged-chr16-50457191-3	chr16	50457095	50457295	+	822.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24729.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	10.5	4.53	38.79	21.72	18.0	11.6	15.61	19.23	22.42	13.05	20.6	9.4
Merged-chr15-96564035-3	chr15	96563939	96564139	+	822.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	77923.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	9.69	5.53	14.26	8.04	20.05	10.03	17.27	16.99	19.28	7.03	14.07	13.16
Merged-chr7-110184869-3	chr7	110184779	110184979	+	822.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEi|LINE|L1	-36824.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	12.11	7.29	17.11	11.26	7.77	8.15	5.31	8.72	22.42	12.05	9.55	10.65
Merged-chr11-40368094-1	chr11	40367994	40368194	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	324588.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.4	0.75	2.28	2.41	2.86	8.15	7.64	8.78	0.0	0.5	0.0	1.25
Merged-chr7-3946304-2	chr7	3946209	3946409	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30808.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	6.06	6.04	4.56	13.67	17.18	9.09	11.96	15.95	11.01	7.53	13.57	4.07
Merged-chr2-125594177-3	chr2	125594097	125594297	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081091, intron 13 of 27)	intron (NM_001081091, intron 13 of 27)	30916.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	12.52	17.86	17.68	27.35	11.45	13.17	5.65	17.89	12.19	9.04	11.05	6.58
Merged-chr10-30773443-1	chr10	30773343	30773543	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	29883.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	3.02	7.99	3.62	5.73	7.84	9.3	10.46	3.93	4.02	4.52	6.58
Merged-chr5-121215540-1	chr5	121215440	121215640	+	822.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4679.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.65	1.51	3.42	2.01	5.73	9.41	1.99	0.93	11.6	14.56	7.03	4.7
Merged-chr8-56614465-1	chr8	56614365	56614565	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63331.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	7.27	7.04	4.56	1.61	5.32	3.14	5.31	6.67	7.87	6.53	9.55	3.45
Merged-chr6-129237604-3	chr6	129237503	129237703	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	442.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	13.33	8.3	5.7	3.62	4.09	6.9	4.65	4.79	12.59	10.54	6.03	9.08
Merged-chr2-165403479-1	chr2	165403379	165403579	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102a|DNA|hAT-Charlie	-3085.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.81	3.02	5.7	0.4	3.68	2.2	5.98	6.98	1.18	0.5	4.02	3.13
Merged-chr16-20014270-1	chr16	20014170	20014370	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-31221.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	5.25	6.79	9.13	4.83	11.45	6.59	12.95	2.89	4.92	3.51	9.04	5.01
Merged-chr13-113807770-1	chr13	113807670	113807870	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	MTD|LTR|ERVL-MaLR	13262.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	10.09	10.31	7.42	6.44	0.0	0.0	0.0	0.0	0.39	0.0	2.01	0.94
Merged-chrX-167912108-1	chrX	167912008	167912208	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033330, intron 3 of 19)	intron (NM_001033330, intron 3 of 19)	-57031.0	NM_001290428	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	2.02	0.0	3.42	2.41	3.27	0.31	7.31	6.45	0.39	2.01	1.0	0.94
Merged-chr7-98318396-1	chr7	98318296	98318496	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2812.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.46	1.76	6.28	0.8	10.23	5.33	2.66	7.77	5.9	3.01	5.02	2.51
Merged-chr4-108546247-1	chr4	108546147	108546347	+	822.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 25 of 30)	intron (NM_175472, intron 25 of 30)	33089.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.0	4.28	3.42	0.0	4.5	0.63	0.0	1.88	12.78	13.56	6.03	5.64
Merged-chr15-30614561-1	chr15	30614461	30614661	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-424565.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.81	0.5	0.0	1.61	19.64	7.21	5.65	22.43	0.2	0.0	2.51	0.63
Merged-chr17-56264240-3	chr17	56264142	56264342	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010192)	TTS (NM_010192)	7449.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	12.11	12.07	3.42	7.24	13.5	21.95	4.32	8.55	24.98	20.08	12.56	7.52
Merged-chr2-31076024-2	chr2	31075926	31076126	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	20474.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	9.29	5.03	11.41	15.69	13.09	4.39	10.96	15.17	5.7	3.01	5.53	2.51
Merged-chr1-54829430-1	chr1	54829330	54829530	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	96957.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.04	3.02	10.84	1.61	9.0	8.78	3.99	8.8	2.95	2.01	5.53	6.89
Merged-chr2-23092545-1	chr2	23092445	23092645	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149742, intron 8 of 12)	(CA)n|Simple_repeat|Simple_repeat	23473.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	8.48	2.77	1.14	3.62	0.0	7.21	0.33	4.96	6.1	3.01	3.01	1.57
Merged-chr18-32833134-1	chr18	32833034	32833234	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045381, exon 2 of 5)	non-coding (NR_045381, exon 2 of 5)	-4091.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	2.83	1.26	2.28	3.62	6.95	5.33	6.31	8.16	3.34	3.01	7.54	2.51
Merged-chr7-118855258-1	chr7	118855158	118855358	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081446)	promoter-TSS (NM_001081446)	355.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	9.69	9.06	5.7	5.23	4.91	2.2	12.62	7.54	5.9	4.02	5.02	5.64
Merged-chr10-13687404-1	chr10	13687304	13687504	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-134262.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	4.04	3.52	1.14	4.02	6.95	8.78	3.99	8.72	4.13	6.03	3.52	1.57
Merged-chr18-37993203-1	chr18	37993103	37993303	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139206, intron 4 of 32)	L2|LINE|L2	-2258.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0.0	0.0	1.14	0.0	4.91	7.84	0.0	6.95	5.9	1.0	8.04	4.07
Merged-chr13-37692560-1	chr13	37692460	37692660	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133478.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	10.5	4.53	7.99	8.45	9.82	8.15	6.31	12.31	6.29	3.01	6.03	13.47
Merged-chr1-154090028-1	chr1	154089928	154090128	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-111159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.04	3.27	10.84	2.01	9.0	4.08	4.98	5.55	5.51	9.54	9.55	5.33
Merged-chr2-156147468-1	chr2	156147368	156147568	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291114, exon 17 of 17)	3' UTR (NM_001291114, exon 17 of 17)	3235.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.4	0.0	3.42	0.8	6.55	14.42	7.97	8.44	1.38	2.01	1.0	0.0
Merged-chr8-91082618-1	chr8	91082518	91082718	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12561.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.65	3.02	1.14	0.8	10.64	19.13	17.61	6.7	6.1	4.02	2.51	5.01
Merged-chr12-35392375-2	chr12	35392273	35392473	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142616.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	8.48	1.01	4.56	20.91	11.05	3.76	10.96	16.77	11.6	6.03	15.58	5.64
Merged-chr17-65961701-1	chr17	65961601	65961801	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10514.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	6.06	5.53	3.42	0.8	5.32	9.09	0.33	7.82	7.28	5.02	3.52	1.25
Merged-chr6-13681035-1	chr6	13680935	13681135	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3069.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	3.23	0.0	3.42	0.8	2.45	3.14	7.31	6.81	3.34	1.0	1.51	2.51
Merged-chr15-63617473-1	chr15	63617373	63617573	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137865.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.63	2.01	6.85	10.86	7.36	2.51	2.99	9.5	2.56	5.52	5.53	4.07
Merged-chr6-115534897-1	chr6	115534797	115534997	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9807.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	8.88	3.27	2.85	4.83	10.23	5.02	9.63	8.94	5.51	8.54	7.03	6.58
Merged-chr9-50849460-3	chr9	50849359	50849559	+	821.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7465.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	10.9	9.56	11.41	10.86	14.73	13.17	8.3	12.67	27.54	28.12	27.13	9.08
Merged-chr6-58611973-3	chr6	58611848	58612048	+	821.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011920, intron 1 of 15)	RMER17C2|LTR|ERVK	15276.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	10.5	6.54	12.55	18.5	14.73	9.09	10.3	13.15	12.78	18.58	16.58	7.21
Merged-chr10-88334134-3	chr10	88334036	88334236	+	821.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22939.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	8.48	6.79	19.97	9.65	11.45	12.86	4.65	14.92	21.83	14.06	17.59	8.77
Merged-chr16-8671007-3	chr16	8670904	8671104	+	821.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	1149.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	12.52	9.81	7.99	9.65	8.59	21.95	14.95	15.93	17.31	15.57	15.07	6.58
Merged-chr11-103102200-2	chr11	103102068	103102268	+	821.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152813)	promoter-TSS (NM_152813)	480.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	6.06	9.31	3.42	6.44	12.27	9.09	7.31	8.16	10.62	17.07	7.03	9.08
Merged-chr18-54900088-3	chr18	54900000	54900200	+	821.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 3 of 8)	intron (NM_001360787, intron 3 of 8)	90080.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.85	7.29	5.13	18.9	17.18	12.23	6.64	12.56	12.39	13.05	5.02	14.1
Merged-chr11-97408402-3	chr11	97408303	97408503	+	821.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41757.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	12.11	11.07	6.28	3.22	6.95	13.17	2.99	6.2	11.41	17.57	8.04	7.83
Merged-chr3-104994746-3	chr3	104994627	104994827	+	821.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33018.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	9.29	9.56	18.25	4.83	9.41	10.35	8.64	14.5	7.08	9.04	15.07	16.29
Merged-chr18-38354282-2	chr18	38354164	38354364	+	821.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15271.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.65	4.78	2.85	6.03	14.73	6.9	9.97	7.01	9.05	9.54	8.54	16.6
Merged-chr6-137649275-3	chr6	137649194	137649394	+	821.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271588)	promoter-TSS (NM_001271588)	-9.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	22.21	19.87	14.26	19.71	11.86	11.6	6.31	11.75	6.49	6.53	15.58	7.52
Merged-chr2-60323602-3	chr2	60323500	60323700	+	821.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013825, intron 24 of 34)	intron (NM_013825, intron 24 of 34)	-39116.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	13.33	7.29	7.42	10.86	12.27	13.48	11.29	13.88	21.05	20.08	19.09	5.33
Merged-chr8-11471513-2	chr8	11471415	11471615	+	821.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	L1M2|LINE|L1	-6414.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.65	9.56	10.84	6.44	12.27	7.53	2.66	10.91	14.16	10.54	9.55	10.34
Merged-chr4-116202949-3	chr4	116202858	116203058	+	821.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-18458.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	8.08	11.07	8.56	13.27	20.05	22.26	6.64	11.89	15.74	5.02	20.1	10.96
Merged-chr10-8890688-2	chr10	8890598	8890798	+	821.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4628.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	11.71	6.54	14.83	7.24	14.73	20.7	10.63	18.34	0.98	0.0	3.01	1.88
Merged-chr10-14678513-2	chr10	14678411	14678611	+	821.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025418, intron 4 of 7)	intron (NM_025418, intron 4 of 7)	26978.0	NM_025418	66201.0	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	11.71	11.32	13.69	15.28	11.86	11.29	15.28	20.19	7.87	9.54	16.08	4.07
Merged-chr19-56423101-3	chr19	56422906	56423106	+	821.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007611, intron 2 of 6)	intron (NM_007611, intron 2 of 6)	25877.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	7.27	13.83	6.85	11.66	6.95	5.33	17.27	9.39	6.69	2.01	8.54	8.77
Merged-chr1-34850767-3	chr1	34850762	34850962	+	821.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	873.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	4.04	11.32	6.28	5.63	8.59	2.82	10.3	6.28	8.06	12.05	12.56	14.41
Merged-chr9-37243034-1	chr9	37242934	37243134	+	821.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	12704.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.44	2.52	1.14	3.62	8.18	7.21	9.63	12.31	7.47	5.02	1.51	1.57
Merged-chr16-46497317-1	chr16	46497217	46497417	+	821.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021497)	promoter-TSS (NM_021497)	-350.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	5.25	2.26	2.85	4.02	4.09	8.78	8.3	6.56	4.13	2.01	1.0	3.13
Merged-chr10-21945010-3	chr10	21944908	21945108	+	821.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-33664.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.27	7.8	5.7	8.85	14.32	13.8	6.64	10.15	18.49	21.59	19.09	7.83
Merged-chr6-108736365-3	chr6	108736268	108736468	+	821.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46691.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	14.13	9.31	7.42	11.26	12.68	6.9	10.3	15.5	10.82	6.03	13.06	5.01
Merged-chr8-11001366-3	chr8	11001272	11001472	+	821.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-6478.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	10.09	9.31	10.84	8.45	15.55	15.37	14.62	19.74	16.72	12.05	16.08	8.46
Merged-chr13-21711054-3	chr13	21710965	21711165	+	821.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	5078.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	14.94	9.31	9.7	10.46	11.86	6.59	6.64	10.6	18.29	16.57	6.03	17.86
Merged-chr8-70821714-3	chr8	70821608	70821808	+	821.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008353)	TTS (NM_008353)	13259.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	10.9	18.61	9.7	6.84	6.14	8.78	5.31	6.0	10.03	19.08	29.65	10.96
Merged-chr12-118748677-3	chr12	118748558	118748758	+	821.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97671.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	9.69	12.07	8.56	20.91	5.32	6.9	11.96	14.22	18.49	14.56	13.57	9.08
Merged-chr6-124414554-3	chr6	124414465	124414665	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360570, intron 1 of 14)	intron (NM_001360570, intron 1 of 14)	298.0	NM_001277330	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	4.04	7.55	5.7	4.02	6.95	14.42	7.31	4.57	10.82	12.05	6.03	9.4
Merged-chr1-67061660-3	chr1	67061532	67061732	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22760.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	10.5	9.06	10.84	5.63	11.86	13.8	6.98	13.18	9.24	19.58	18.59	11.59
Merged-chr3-96728440-3	chr3	96728338	96728538	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	827.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	18.57	8.05	19.97	4.42	13.91	10.98	9.97	5.94	14.36	15.06	18.09	5.01
Merged-chr1-172346932-1	chr1	172346832	172347032	+	821.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5722.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	5.25	6.54	7.99	6.03	15.96	5.96	5.65	7.51	12.59	8.03	9.04	4.7
Merged-chr15-50695704-3	chr15	50695608	50695808	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	193341.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.33	11.82	6.85	9.25	21.68	23.83	14.62	14.89	11.6	15.57	8.04	5.01
Merged-chr2-142610793-3	chr2	142610700	142610900	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	290664.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	9.69	8.3	11.98	8.04	5.32	8.15	3.99	7.21	10.62	13.05	17.08	4.39
Merged-chr7-127637124-3	chr7	127637033	127637233	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21861.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	2.42	11.82	0.0	12.07	4.91	13.17	3.65	7.85	9.24	4.02	10.55	6.89
Merged-chr9-114329967-3	chr9	114329866	114330066	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007535)	promoter-TSS (NM_007535)	-169.0	NM_007535	12046.0	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	27.46	32.2	18.25	26.95	11.86	22.58	20.93	13.09	6.49	7.53	10.05	5.64
Merged-chr10-120113655-3	chr10	120113573	120113773	+	821.622192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-708.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	8.88	8.8	18.25	21.72	24.14	7.84	12.95	8.38	14.36	5.02	14.57	13.47
Merged-chr13-69493214-3	chr13	69493117	69493317	+	821.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40647.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	12.52	20.12	8.56	16.89	17.18	25.09	13.29	14.69	9.44	13.56	11.56	3.13
Merged-chr7-117490879-3	chr7	117490765	117490965	+	821.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	109886.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	1.21	5.79	10.27	3.62	2.45	3.45	12.29	5.72	3.74	7.53	6.03	5.95
Merged-chr3-27198787-3	chr3	27198688	27198888	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	L1MA6|LINE|L1	15784.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.08	15.85	12.55	12.07	19.23	11.6	4.98	10.01	17.31	7.53	12.06	20.99
Merged-chr9-94670453-3	chr9	94670354	94670554	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	562.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	7.27	12.07	10.84	13.67	15.96	12.54	9.63	10.07	9.44	13.05	13.06	9.71
Merged-chr7-97842930-3	chr7	97842855	97843055	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011035)	promoter-TSS (NM_011035)	16.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	6.46	6.54	14.26	7.24	18.0	16.93	10.63	7.32	12.98	27.62	25.63	13.78
Merged-chr17-73263246-3	chr17	73263139	73263339	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136057.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	11.71	7.04	13.69	6.44	11.45	6.27	5.31	12.11	12.19	6.03	4.52	10.96
Merged-chr9-44286634-3	chr9	44286535	44286735	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138955, intron 2 of 14)	MIRc|SINE|MIR	1609.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	10.5	10.06	9.13	10.05	11.45	32.93	4.32	8.75	17.11	19.58	19.6	6.27
Merged-chr12-71864731-3	chr12	71864621	71864821	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-24822.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	13.73	12.58	9.13	12.47	9.41	19.76	14.62	12.34	10.82	10.54	27.64	9.08
Merged-chr5-88601426-3	chr5	88601329	88601529	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289777, intron 3 of 14)	Tigger7|DNA|TcMar-Tigger	17916.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.67	5.53	11.98	9.25	14.32	10.66	6.98	13.85	24.59	6.53	29.14	5.01
Merged-chr2-137942948-1	chr2	137942848	137943048	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-313636.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.06	5.53	2.85	7.24	6.14	12.54	3.65	14.61	5.11	8.03	8.04	2.82
Merged-chr4-101325542-1	chr4	101325442	101325642	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21485.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	4.04	4.78	9.7	5.63	7.36	6.9	2.33	9.62	9.05	3.51	6.03	3.76
Merged-chr17-17915129-2	chr17	17915027	17915227	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27303.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.23	7.8	17.68	7.24	2.05	4.08	2.66	5.16	22.23	7.53	11.05	4.07
Merged-chr2-3336003-3	chr2	3335921	3336121	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030063)	promoter-TSS (NM_030063)	-147.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	10.5	9.06	14.26	9.25	10.64	13.8	9.3	9.79	7.87	3.01	12.06	10.96
Merged-chr17-71836021-2	chr17	71835916	71836116	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	54069.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.83	10.82	15.4	11.26	5.32	0.63	6.64	8.44	0.79	1.0	0.0	1.88
Merged-chr16-52093524-1	chr16	52093424	52093624	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61975.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	1.62	6.54	8.56	3.62	4.91	9.41	5.31	6.36	9.44	5.02	10.55	3.76
Merged-chr8-40272435-1	chr8	40272335	40272535	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14518.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	4.04	1.51	6.85	0.8	7.36	4.39	8.64	10.4	2.56	12.55	2.01	0.31
Merged-chr6-66962742-1	chr6	66962642	66962842	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	65851.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.06	7.04	4.56	4.83	10.64	13.48	16.28	9.17	5.7	10.04	11.56	6.58
Merged-chr6-24894776-3	chr6	24894667	24894867	+	821.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36770.0	NM_028957	74468.0	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	10.9	3.02	14.26	8.85	13.91	15.05	19.93	19.65	12.98	13.05	20.6	10.65
Merged-chr10-111102477-3	chr10	111102384	111102584	+	821.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62318.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.85	8.05	7.99	14.08	13.09	4.7	3.99	12.7	6.1	12.55	13.57	8.46
Merged-chr11-30184010-3	chr11	30183911	30184111	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	14246.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	8.88	14.34	13.12	8.85	9.82	5.33	10.3	10.37	9.83	9.04	4.02	3.13
Merged-chr5-72844544-2	chr5	72844444	72844644	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	L1MB5|LINE|L1	23904.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	13.73	9.06	11.41	11.26	10.64	4.7	8.3	18.73	5.11	6.03	13.57	6.27
Merged-chr15-81568784-3	chr15	81568643	81568843	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-17471.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	15.75	8.8	7.42	13.27	7.77	14.11	5.98	8.75	8.85	10.04	11.56	8.14
Merged-chr13-111977929-3	chr13	111977841	111978041	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	110005.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	8.08	9.31	13.69	20.51	18.82	19.44	16.94	27.81	7.47	4.02	17.59	6.89
Merged-chr2-91723579-2	chr2	91723468	91723668	+	821.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6570.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	5.25	7.04	3.42	2.41	14.32	5.64	3.99	10.57	8.46	10.04	7.03	10.65
Merged-chr19-5833995-3	chr19	5833917	5834117	+	821.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	11461.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	9.29	12.07	30.8	16.09	9.82	12.54	13.29	9.73	7.67	4.52	5.53	6.58
Merged-chr16-30532253-3	chr16	30532137	30532337	+	821.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	18341.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	16.96	16.6	6.28	8.85	5.73	12.23	6.98	14.97	14.36	18.08	13.57	5.95
Merged-chr12-111039974-2	chr12	111039873	111040073	+	821.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198023, exon 2 of 12)	exon (NM_198023, exon 2 of 12)	175.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	12.11	5.03	5.7	4.42	10.64	5.02	9.97	8.8	11.8	12.55	10.05	10.34
Merged-chr4-53228673-2	chr4	53228572	53228772	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17524.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.63	9.06	1.14	6.03	13.91	8.47	10.3	12.64	14.55	13.56	11.56	4.7
Merged-chr8-95349172-3	chr8	95349089	95349289	+	821.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3107.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	15.75	7.29	22.82	15.69	17.59	9.41	20.26	24.56	8.85	5.52	9.55	9.71
Merged-chr14-27190342-1	chr14	27190242	27190442	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	46349.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.04	6.04	1.71	8.85	9.82	7.53	8.3	13.07	6.69	2.01	9.04	3.76
Merged-chr8-84848068-3	chr8	84847981	84848181	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1150.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	4.04	2.77	0.0	2.82	7.36	6.9	3.65	6.03	11.01	6.53	15.58	11.59
Merged-chr19-61052147-1	chr19	61052047	61052247	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88693.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.83	3.02	2.28	2.82	2.86	6.59	6.64	8.3	2.16	6.03	9.04	3.45
Merged-chr18-68145849-1	chr18	68145749	68145949	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-82097.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.86	5.53	7.42	5.63	11.05	9.09	4.98	12.62	5.51	5.02	7.54	4.07
Merged-chr1-24612749-3	chr1	24612645	24612845	+	821.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25308.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	4982.43	5045.4	5582.49	5869.7	413.6	474.75	455.41	2333.73	10.42	18.58	10.55	3.13
Merged-chr13-45000982-2	chr13	45000888	45001088	+	821.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	1108.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.63	5.79	5.7	1.21	13.91	11.29	8.97	8.61	18.49	6.03	10.05	5.01
Merged-chr6-38507258-3	chr6	38507153	38507353	+	821.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-72.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	8.48	12.58	15.97	27.75	11.45	14.11	13.62	22.63	9.44	4.02	17.08	7.21
Merged-chr7-106652046-3	chr7	106651967	106652167	+	821.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7422.0	NM_001277182	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	8.08	8.05	4.56	7.64	13.5	8.47	4.32	22.85	34.22	44.69	46.73	18.17
Merged-chr10-118042861-2	chr10	118042775	118042975	+	821.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-98912.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	10.5	4.78	10.27	8.45	20.46	14.74	19.27	31.79	2.16	1.0	2.01	1.57
Merged-chr9-122349332-2	chr9	122349229	122349429	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2287.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	5.65	2.26	9.7	9.65	21.68	16.62	20.93	25.51	8.65	6.53	10.55	8.14
Merged-chr12-75817704-2	chr12	75817589	75817789	+	821.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-629.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	16.15	9.81	2.85	7.24	1.23	23.52	5.98	3.5	13.37	15.06	8.04	3.13
Merged-chr9-44083954-1	chr9	44083854	44084054	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-966.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	3.63	2.01	9.13	4.02	8.18	4.7	10.3	9.36	7.47	5.52	4.52	5.95
Merged-chr17-67115666-1	chr17	67115566	67115766	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	B3|SINE|B2	-89431.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	1.62	6.79	2.85	4.83	9.0	5.33	4.98	11.44	2.95	0.0	0.5	5.01
Merged-chr1-173682437-2	chr1	173682337	173682537	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162938, intron 3 of 6)	intron (NM_001162938, intron 3 of 6)	8757.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	0.0	0.0	0.0	0.0	4.09	5.02	6.31	6.28	22.62	24.6	37.18	13.47
Merged-chr9-63793878-2	chr9	63793796	63793996	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35902.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.04	5.53	5.7	1.61	15.96	14.42	4.65	16.09	9.64	7.53	13.06	5.64
Merged-chr12-112630993-2	chr12	112630892	112631092	+	821.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 2 of 12)	MTD|LTR|ERVL-MaLR	10945.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	13.33	7.04	22.25	11.26	11.05	8.15	10.63	17.36	6.69	5.52	7.54	5.95
Merged-chr17-66235326-3	chr17	66235223	66235423	+	821.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111803.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	9.29	8.55	7.42	16.09	10.23	5.64	11.29	14.38	15.54	5.02	16.58	9.71
Merged-chrX-9461492-3	chrX	9461370	9461570	+	821.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 3 of 12)	intron (NM_007807, intron 3 of 12)	7854.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	11.71	5.28	7.99	5.63	9.82	18.19	10.96	9.31	11.8	18.58	13.57	13.16
Merged-chr9-57433485-3	chr9	57433370	57433570	+	821.205566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	6266.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	7.67	6.04	14.26	7.64	13.91	11.29	7.97	12.22	11.6	4.02	18.59	13.47
Merged-chr1-173763281-1	chr1	173763181	173763381	+	821.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008329, intron 1 of 8)	Lx8|LINE|L1	3638.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.0	0.5	0.0	0.4	0.0	0.0	0.0	0.0	16.33	23.6	12.06	15.66
Merged-chr19-28659389-1	chr19	28659289	28659489	+	821.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-18835.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	4.04	0.5	1.71	0.4	10.23	6.59	5.98	12.93	2.95	5.52	0.0	2.51
Merged-chr14-25707840-3	chr14	25707742	25707942	+	821.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6560.0	NR_028021	68173.0	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	8.88	13.83	17.11	12.07	15.14	14.42	6.98	9.36	9.44	14.56	18.59	1.88
Merged-chr5-136954522-3	chr5	136954368	136954568	+	821.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	1193.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.86	6.04	7.99	6.03	4.09	7.53	6.64	8.1	13.37	6.03	7.03	8.77
Merged-chr5-148379677-1	chr5	148379577	148379777	+	821.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007513, intron 1 of 12)	intron (NM_007513, intron 1 of 12)	13138.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	2.02	7.04	6.85	5.63	3.27	10.35	0.33	3.93	10.62	10.54	15.07	11.59
Merged-chr15-85963640-3	chr15	85963552	85963752	+	821.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009886, intron 2 of 34)	MTD|LTR|ERVL-MaLR	70125.0	NM_009886	12614.0	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	12.52	5.03	15.4	9.25	5.73	13.8	6.31	9.28	5.9	6.03	14.57	10.02
Merged-chr7-125599829-3	chr7	125599784	125599984	+	821.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3545.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	10.9	6.79	7.99	5.63	2.86	5.96	3.99	14.75	10.23	11.05	10.55	4.39
Merged-chr7-7188238-4	chr7	7188083	7188283	+	821.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16830.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	8.08	7.8	2.28	15.28	11.86	5.64	12.62	12.56	5.11	9.04	5.53	6.89
Merged-chr1-88653781-2	chr1	88653667	88653867	+	821.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48424.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	8.48	2.77	6.85	4.83	9.41	14.74	8.64	13.77	10.42	22.59	9.04	5.95
Merged-chr14-29966072-3	chr14	29966013	29966213	+	821.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2267.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	8.88	5.28	7.42	12.07	17.18	10.03	3.99	7.12	12.78	8.03	17.08	14.72
Merged-chr19-5840625-3	chr19	5840504	5840704	+	821.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4874.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	10.5	15.85	2.28	21.72	11.05	13.17	1.99	10.04	8.06	13.56	4.52	5.95
Merged-chr7-64049895-3	chr7	64049768	64049968	+	821.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103967.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	8.48	12.83	7.42	10.86	26.59	12.23	13.62	14.44	11.01	12.55	13.06	6.89
Merged-chr5-32935759-2	chr5	32935673	32935873	+	821.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	72052.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.4	6.04	7.99	7.24	3.27	5.96	8.3	7.23	26.75	20.59	16.58	4.7
Merged-chr11-117110637-3	chr11	117110523	117110723	+	821.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4549.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	8.48	13.58	6.85	2.82	16.77	28.22	7.31	6.56	32.45	13.05	9.55	9.08
Merged-chr15-59520673-3	chr15	59520573	59520773	+	821.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-127981.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.27	8.3	7.42	7.24	11.45	12.23	4.65	12.03	12.78	19.08	14.57	4.39
Merged-chr10-67291269-2	chr10	67291157	67291357	+	821.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5976.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.46	6.29	10.27	3.62	11.45	5.64	7.97	26.41	15.93	7.03	10.05	11.28
Merged-chr7-135871167-3	chr7	135871051	135871251	+	821.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-154772.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	9.69	9.81	7.42	5.63	18.0	14.42	10.3	12.34	10.23	8.03	16.58	11.9
Merged-chr8-120041060-1	chr8	120040960	120041160	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	48622.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	3.23	5.28	3.42	4.02	13.5	6.59	9.97	7.4	7.08	4.52	11.56	6.58
Merged-chr2-112216138-2	chr2	112216014	112216214	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23727.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	6.86	5.28	3.42	2.41	9.82	7.21	7.31	10.46	13.57	7.03	6.53	8.46
Merged-chr13-40917368-1	chr13	40917268	40917468	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133219)	promoter-TSS (NM_133219)	-266.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.04	2.52	1.14	1.21	8.18	1.88	2.66	6.22	6.69	6.03	5.02	2.51
Merged-chr3-137821220-1	chr3	137821120	137821320	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37605.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	2.42	3.27	4.56	6.03	0.0	7.53	4.65	5.72	3.34	1.51	5.02	1.88
Merged-chr4-48109304-1	chr4	48109204	48109404	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15615.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.81	0.5	3.99	0.8	4.5	4.08	6.64	4.82	3.15	7.03	5.02	3.76
Merged-chr6-136736004-1	chr6	136735904	136736104	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145067, intron 12 of 25)	ORR1E|LTR|ERVL-MaLR	45738.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	3.23	4.78	4.56	7.24	6.95	10.35	5.98	9.5	6.29	4.02	5.02	3.76
Merged-chr11-54247542-1	chr11	54247442	54247642	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_009969, exon 4 of 4)	3' UTR (NM_009969, exon 4 of 4)	2357.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	16.15	10.82	11.41	4.42	3.27	8.47	0.33	1.99	0.39	6.03	0.0	0.63
Merged-chr5-9032848-1	chr5	9032748	9032948	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-35702.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	1.62	4.53	6.85	9.25	9.41	4.39	6.31	9.53	6.69	0.0	3.52	1.88
Merged-chr12-57231234-3	chr12	57231139	57231339	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	814.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	6.46	10.56	10.84	13.27	12.27	15.37	9.3	9.25	17.11	23.6	13.57	15.04
Merged-chr16-87452764-1	chr16	87452664	87452864	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx2A|LINE|L1	-2221.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	17.36	10.31	9.7	5.23	7.77	3.14	1.66	1.82	3.15	8.03	6.03	3.45
Merged-chr5-24051949-1	chr5	24051849	24052049	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-21259.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.0	0.0	1.14	0.8	9.82	15.05	12.62	7.85	2.95	1.0	0.0	0.0
Merged-chr10-4096459-1	chr10	4096359	4096559	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	116661.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	4.85	2.01	4.56	3.22	5.73	7.84	9.97	8.07	1.97	2.51	3.01	1.25
Merged-chr3-86839808-1	chr3	86839708	86839908	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	81076.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	4.04	16.1	11.41	9.25	0.0	0.0	0.0	0.0	1.97	1.0	1.0	0.94
Merged-chr4-129928601-2	chr4	129928515	129928715	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22389.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	5.25	5.79	13.12	4.02	7.77	9.41	1.99	4.21	17.31	13.56	7.54	5.95
Merged-chr11-115929948-3	chr11	115929829	115930029	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130454, intron 2 of 18)	intron (NM_130454, intron 2 of 18)	3563.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	17.77	24.4	7.99	14.88	8.18	10.35	14.95	13.15	11.41	6.03	11.56	9.4
Merged-chr18-3006332-1	chr18	3006232	3006432	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117080.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	8.88	8.05	6.28	5.63	13.09	9.41	10.3	15.11	6.49	10.04	7.03	11.28
Merged-chr13-49169997-2	chr13	49169882	49170082	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17565.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.25	7.04	11.41	3.62	11.05	3.45	1.66	5.89	17.51	5.02	17.59	13.47
Merged-chr18-67973749-1	chr18	67973649	67973849	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40576.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.63	5.28	4.56	3.22	9.82	4.39	5.31	7.32	3.34	2.51	4.02	5.33
Merged-chr4-34080102-1	chr4	34080002	34080202	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-30035.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.81	2.01	2.28	0.8	0.82	2.82	6.31	7.71	3.74	0.5	3.52	1.57
Merged-chr13-44164489-2	chr13	44164407	44164607	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	43340.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	8.08	2.52	15.97	7.24	6.55	3.76	8.3	4.71	9.44	5.52	3.01	3.76
Merged-chr12-111653641-1	chr12	111653541	111653741	+	821.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021516, intron 16 of 16)	intron (NM_021516, intron 16 of 16)	18697.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	4.44	8.55	0.0	3.22	7.77	11.29	2.33	3.48	14.16	7.53	12.56	10.96
Merged-chr9-32696910-1	chr9	32696810	32697010	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	868.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.23	3.52	1.14	0.8	2.05	10.35	3.99	7.91	3.34	2.01	0.5	7.21
Merged-chr10-98572976-3	chr10	98572877	98573077	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-221110.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	8.88	7.8	7.99	5.23	5.73	5.96	16.94	12.03	18.1	10.04	18.59	15.04
Merged-chr4-22381920-1	chr4	22381820	22382020	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172988, intron 3 of 8)	intron (NM_172988, intron 3 of 8)	24377.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.23	0.75	6.28	0.8	5.73	1.25	5.98	8.72	7.28	1.0	6.03	2.51
Merged-chr12-36308914-1	chr12	36308814	36309014	+	821.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5255.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	1.62	5.03	8.56	9.25	6.55	1.57	4.65	13.04	10.23	5.52	18.59	10.02
Merged-chr4-44292784-1	chr4	44292684	44292884	+	821.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8133.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	1.62	3.02	5.7	4.02	2.05	1.88	2.66	2.78	11.41	9.04	6.03	10.02
Merged-chr17-5150881-1	chr17	5150781	5150981	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	155807.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.04	4.53	2.28	0.4	6.55	8.15	11.63	9.62	1.97	1.51	15.07	6.27
Merged-chr12-16904104-1	chr12	16904004	16904204	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	ORR1D2|LTR|ERVL-MaLR	9126.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.04	1.51	1.14	4.02	8.59	5.33	3.65	6.11	5.31	1.51	1.51	4.07
Merged-chr7-120977224-1	chr7	120977124	120977324	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001354986, intron 1 of 4)	intron (NM_001354986, intron 1 of 4)	5088.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	1.62	0.0	0.0	2.41	1.64	8.15	2.66	7.51	4.72	0.0	2.01	5.64
Merged-chr4-88035119-1	chr4	88035019	88035219	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1712.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.65	3.27	4.56	2.82	4.5	1.88	6.64	6.84	4.52	1.0	2.01	5.33
Merged-chr6-54644572-1	chr6	54644472	54644672	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164361, exon 14 of 14)	3' UTR (NM_001164361, exon 14 of 14)	-37052.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	6.06	3.02	5.7	2.01	14.73	6.9	8.64	11.07	4.92	1.0	4.02	2.82
Merged-chr8-36130301-1	chr8	36130201	36130401	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	-25709.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.85	1.26	2.28	2.41	8.18	4.08	6.31	6.87	2.16	3.01	0.5	2.82
Merged-chr2-9926286-3	chr2	9926189	9926389	+	820.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20140.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	8.48	10.31	18.25	13.27	14.73	15.37	6.98	18.25	13.96	25.11	22.61	11.59
Merged-chr8-123034318-3	chr8	123034214	123034414	+	820.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	7970.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	9.29	11.07	6.85	8.04	22.09	20.38	21.92	13.99	14.36	12.55	13.57	9.71
Merged-chr16-17803160-5	chr16	17803039	17803239	+	820.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153790, exon 4 of 11)	exon (NM_153790, exon 4 of 11)	5857.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	7.27	7.04	7.99	1.61	4.5	10.98	8.64	5.36	11.21	10.04	11.05	10.65
Merged-chr7-98086224-2	chr7	98086133	98086333	+	820.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23015.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.42	5.79	0.57	4.83	12.68	4.7	2.99	6.98	10.23	9.54	22.11	9.71
Merged-chr2-35696586-3	chr2	35696504	35696704	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290639)	promoter-TSS (NM_001290639)	-128.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	7.67	8.05	13.12	16.89	22.91	13.8	11.29	18.64	13.37	11.05	10.55	7.21
Merged-chr18-75019597-3	chr18	75019466	75019666	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 1 of 16)	intron (NM_027727, intron 1 of 16)	794.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	8.88	12.07	4.56	14.08	8.59	10.03	10.63	12.53	8.85	9.54	6.53	10.02
Merged-chr9-3015314-3	chr9	3015221	3015421	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	23422.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	12.11	13.08	11.41	8.04	9.41	3.14	12.29	22.68	12.19	23.1	10.05	11.28
Merged-chrX-8206506-3	chrX	8206421	8206621	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023638)	promoter-TSS (NM_023638)	4.0	NM_145907	53627.0	Mm.443425	NM_016913	ENSMUSG00000031169	Porcn	2410004O13Rik|AW045557|DXHXS7465e|Mg61|Mporc|Ppn|mMg61|porc	porcupine O-acyltransferase	protein-coding	10.9	4.02	7.99	9.65	10.23	10.66	10.3	15.45	5.31	13.56	18.59	11.28
Merged-chr7-49923599-3	chr7	49923496	49923696	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146013, intron 5 of 15)	intron (NM_001146013, intron 5 of 15)	11896.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	13.33	10.31	26.81	18.5	15.14	25.09	7.97	20.69	15.74	13.05	16.58	5.64
Merged-chrX-57299146-3	chrX	57299065	57299265	+	820.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358573, intron 4 of 20)	intron (NM_001358573, intron 4 of 20)	27436.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	13.33	20.37	13.12	40.22	10.64	14.42	5.31	18.64	11.41	14.56	15.58	7.52
Merged-chr13-112343774-3	chr13	112343676	112343876	+	820.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	55258.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	12.92	6.79	2.28	4.02	26.18	10.03	7.64	10.65	5.7	22.09	24.12	10.02
Merged-chr15-99698812-2	chr15	99698725	99698925	+	820.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289791, exon 9 of 10)	exon (NM_001289791, exon 9 of 10)	-3462.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	3.23	3.77	2.85	1.61	13.5	11.92	3.32	10.96	13.37	6.03	8.54	3.45
Merged-chr18-77708584-2	chr18	77708484	77708684	+	820.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	5426.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	10.09	6.79	7.99	4.83	11.86	16.62	10.3	9.31	11.01	5.02	10.05	9.71
Merged-chrX-7769816-2	chrX	7769687	7769887	+	820.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172472, intron 6 of 9)	intron (NM_172472, intron 6 of 9)	5746.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	8.48	7.8	14.83	10.86	11.05	13.17	14.95	13.43	4.92	7.03	9.04	6.27
Merged-chr7-64349833-1	chr7	64349733	64349933	+	820.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177893, intron 11 of 13)	intron (NM_177893, intron 11 of 13)	24262.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.06	6.54	11.41	11.66	9.82	8.15	20.26	33.59	7.08	5.02	19.09	8.46
Merged-chr5-99235140-3	chr5	99235026	99235226	+	820.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17801.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	17.36	12.58	11.41	8.85	13.09	11.6	4.65	10.01	22.42	24.1	16.08	11.28
Merged-chr7-27804831-3	chr7	27804722	27804922	+	820.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2374.0	NM_027703	71163.0	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	11.71	10.82	14.26	18.9	12.68	12.54	14.95	9.14	14.16	13.05	27.64	8.77
Merged-chr16-55853078-3	chr16	55852972	55853172	+	820.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-14431.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.86	13.58	11.41	10.05	8.59	15.99	8.97	16.77	24.19	20.08	14.57	6.27
Merged-chr1-164136157-3	chr1	164136044	164136244	+	820.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-15691.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	4.44	8.8	9.13	3.22	29.86	23.2	21.92	21.79	15.93	7.53	14.57	9.08
Merged-chr11-8660081-3	chr11	8659985	8660185	+	820.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	4450.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	11.71	9.56	6.85	17.7	31.91	25.4	22.59	25.68	17.51	11.05	13.06	3.76
Merged-chr17-23546916-3	chr17	23546840	23547040	+	820.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3859.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	10.5	12.83	12.55	8.45	7.36	9.41	4.32	5.1	12.39	12.55	9.55	9.4
Merged-chr11-115005251-2	chr11	115005165	115005365	+	820.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3385.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.81	0.25	3.42	2.82	15.14	7.53	6.64	8.16	13.37	4.52	12.56	8.77
Merged-chr17-36058499-1	chr17	36058399	36058599	+	820.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199967)	promoter-TSS (NM_001199967)	-128.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	6.46	1.76	2.28	3.62	15.14	8.15	8.97	15.42	3.15	0.0	0.0	2.51
Merged-chr4-116632224-2	chr4	116632149	116632349	+	820.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4298.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	3.23	2.77	3.42	13.27	4.5	5.64	8.64	9.11	6.69	6.03	10.55	10.65
Merged-chr1-181856006-1	chr1	181855906	181856106	+	820.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13605.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	4.85	3.02	5.7	4.83	10.64	7.53	9.97	9.7	3.54	6.03	7.54	4.39
Merged-chr19-5414969-3	chr19	5414870	5415070	+	820.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027938, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	8155.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	11.31	12.83	10.27	2.82	15.55	10.98	7.31	11.27	15.14	12.05	5.02	16.92
Merged-chr3-87529780-3	chr3	87529691	87529891	+	820.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359750, intron 4 of 4)	intron (NM_001359750, intron 4 of 4)	4213.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	15.75	14.09	17.11	15.69	15.55	19.44	12.62	12.31	8.46	10.04	2.01	6.89
Merged-chr1-62751263-3	chr1	62751214	62751414	+	820.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	43418.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	19.79	12.83	6.85	6.84	4.09	5.64	8.64	9.06	10.82	10.04	13.57	3.45
Merged-chr3-97661413-3	chr3	97661326	97661526	+	820.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182997, intron 2 of 7)	MER58A|DNA|hAT-Charlie	3214.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	13.33	8.8	15.97	10.86	13.91	12.86	6.31	12.06	17.9	9.54	20.6	3.13
Merged-chr9-106353962-3	chr9	106353874	106354074	+	820.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14658.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	6.06	7.29	13.69	6.44	14.73	24.15	9.63	12.84	18.1	26.61	19.09	7.83
Merged-chr16-11012178-3	chr16	11012084	11012284	+	820.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3286.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	12.11	11.07	16.54	10.86	20.46	13.8	6.31	11.69	14.75	11.55	12.56	9.4
Merged-chr19-5741937-3	chr19	5741839	5742039	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1035.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	16.15	6.79	13.69	17.29	6.95	6.27	4.32	10.29	8.46	11.55	17.59	5.95
Merged-chr19-61031922-1	chr19	61031822	61032022	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 3 of 15)	(T)n|Simple_repeat|Simple_repeat	108918.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.06	3.77	4.56	6.03	7.77	5.96	7.64	8.21	1.97	1.0	0.0	0.0
Merged-chr1-132296728-3	chr1	132296614	132296814	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-1912.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	10.9	12.32	5.7	0.0	6.14	16.62	6.64	0.62	10.23	4.02	14.57	0.94
Merged-chr16-50688324-1	chr16	50688224	50688424	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38808.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	2.42	2.52	9.7	6.03	9.0	4.7	9.63	8.92	4.52	6.03	7.03	5.95
Merged-chr1-127084040-3	chr1	127083932	127084132	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120954.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	11.31	8.05	7.42	5.63	5.73	5.96	11.63	18.2	15.74	12.55	21.1	15.66
Merged-chr15-78185111-2	chr15	78185014	78185214	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11006.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	13.73	6.79	21.11	3.62	10.64	21.01	10.3	11.05	7.28	4.02	15.07	4.39
Merged-chr13-76638434-1	chr13	76638334	76638534	+	820.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	MIR|SINE|MIR	253473.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.4	1.51	0.0	0.8	0.0	0.31	0.66	4.37	14.95	4.52	15.07	10.65
Merged-chr17-5566216-3	chr17	5566112	5566312	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	73612.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	10.09	8.05	9.13	4.02	15.96	9.72	17.94	22.65	15.34	12.05	19.09	10.02
Merged-chr8-71388473-1	chr8	71388373	71388573	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181418, intron 9 of 12)	MTE2b|LTR|ERVL-MaLR	-6521.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	4.44	4.53	6.28	6.03	5.73	9.09	6.64	10.37	8.06	4.52	12.06	5.01
Merged-chr7-19936202-3	chr7	19936101	19936301	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR53_Mm|LTR|ERVK	14542.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	13.33	9.31	6.85	5.63	5.73	18.5	4.98	7.71	24.59	17.57	15.07	9.08
Merged-chr8-124261982-1	chr8	124261882	124262082	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	30588.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.0	1.76	6.85	10.05	8.18	0.94	5.31	7.43	0.2	0.0	1.51	2.82
Merged-chr14-77524471-1	chr14	77524371	77524571	+	820.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-17603.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.48	14.55	9.04	16.08	13.16
Merged-chr13-58618729-2	chr13	58618630	58618830	+	820.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7853.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	10.9	11.57	13.69	0.8	3.68	8.15	3.32	3.36	13.96	15.06	4.52	4.39
Merged-chr4-120406538-3	chr4	120406438	120406638	+	820.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013883, intron 1 of 16)	intron (NM_013883, intron 1 of 16)	1257.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	6.06	8.55	16.54	18.5	15.55	10.03	9.97	12.11	16.72	13.56	14.57	7.83
Merged-chr7-35757220-2	chr7	35757127	35757327	+	820.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2773.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	9.69	13.58	3.99	4.02	9.82	8.78	2.66	6.36	7.28	9.04	2.51	3.45
Merged-chr7-115020208-3	chr7	115020091	115020291	+	820.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	68917.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	12.11	15.85	13.69	8.04	8.59	11.92	10.3	11.89	17.9	13.05	21.1	7.83
Merged-chr14-118674872-3	chr14	118674784	118674984	+	820.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	2047.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	11.31	9.56	6.85	19.31	14.73	12.23	8.97	19.4	13.18	13.56	10.55	10.65
Merged-chr2-129315086-3	chr2	129314995	129315195	+	820.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5123.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.04	10.31	17.11	7.24	10.23	11.92	8.97	13.07	22.42	10.04	10.55	8.46
Merged-chr17-29434798-3	chr17	29434694	29434894	+	820.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56251.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	16.56	27.42	23.96	12.47	10.64	6.59	4.65	8.24	20.46	16.57	15.07	8.46
Merged-chr6-108179244-3	chr6	108179130	108179330	+	820.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 1 of 8)	intron (NM_145937, intron 1 of 8)	6353.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	13.73	20.37	37.65	17.7	13.09	15.05	5.31	29.66	12.39	8.54	20.1	9.08
Merged-chr18-47306536-2	chr18	47306427	47306627	+	820.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	62341.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.23	9.81	7.42	14.08	14.32	10.66	15.61	22.01	2.75	1.0	3.52	4.07
Merged-chrX-19237884-2	chrX	19237792	19237992	+	820.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90921.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	8.08	11.32	13.12	12.47	7.36	4.08	6.31	12.25	4.52	9.54	7.03	10.34
Merged-chr19-32379684-3	chr19	32379589	32379789	+	820.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	8360.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.06	7.55	17.68	7.24	8.18	21.01	17.61	16.63	9.64	8.54	9.55	9.71
Merged-chr10-57761512-3	chr10	57761406	57761606	+	820.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23417.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	9.29	9.31	11.41	11.66	17.59	11.92	11.63	18.36	13.18	14.56	11.05	5.64
Merged-chr7-3675071-3	chr7	3674927	3675127	+	820.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181820, exon 4 of 15)	exon (NM_181820, exon 4 of 15)	2526.0	NM_181820	353499.0	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	14.54	6.04	12.55	10.05	9.0	14.42	8.3	9.79	11.8	18.08	15.58	8.77
Merged-chr9-114730293-3	chr9	114730201	114730401	+	820.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-902.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	13.73	9.06	6.85	8.85	7.77	11.6	9.63	9.28	12.78	8.03	11.56	9.71
Merged-chr10-128299958-3	chr10	128299859	128300059	+	820.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1875.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	6.86	7.29	11.41	8.04	15.96	22.89	5.98	9.48	21.83	21.09	35.68	11.28
Merged-chr12-70913594-3	chr12	70913482	70913682	+	820.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24275.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	12.92	8.8	2.28	4.02	8.18	15.05	1.66	10.57	18.49	10.54	14.07	6.27
Merged-chr2-35214916-3	chr2	35214795	35214995	+	820.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13775.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	9.69	20.37	15.97	15.69	11.05	16.93	5.98	8.5	16.13	20.59	21.1	8.77
Merged-chr19-4204159-3	chr19	4204053	4204253	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2550.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	10.9	13.08	19.97	9.25	13.5	12.23	5.65	9.31	15.34	10.54	10.55	9.08
Merged-chr5-92363351-2	chr5	92363251	92363451	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038116)	promoter-TSS (NR_038116)	-55.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	8.48	13.08	8.56	2.01	2.86	13.17	1.99	0.9	14.16	16.07	9.55	5.64
Merged-chr12-111556187-2	chr12	111556079	111556279	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	15233.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	4.44	12.07	12.55	5.63	0.82	7.53	1.99	0.03	13.18	4.52	5.53	9.08
Merged-chr11-85710369-3	chr11	85710265	85710465	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	9379.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	7.27	7.55	10.27	15.69	12.68	10.98	14.28	41.24	18.1	8.54	26.13	11.28
Merged-chr16-76407070-1	chr16	76406970	76407170	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33243.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.86	6.54	13.69	5.23	6.14	6.59	8.97	18.59	5.51	10.04	7.03	4.39
Merged-chr8-82773709-2	chr8	82773595	82773795	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	431.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	4.04	10.82	9.13	9.65	21.27	16.31	8.64	10.04	16.72	13.05	21.61	10.02
Merged-chr16-30944272-3	chr16	30944164	30944364	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137168.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	12.11	10.06	13.69	10.05	15.14	13.17	8.3	8.55	7.67	16.07	15.58	10.65
Merged-chr4-62850566-2	chr4	62850450	62850650	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115024.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	8.88	3.27	5.13	13.67	4.91	11.92	12.95	11.55	6.88	4.02	7.54	11.59
Merged-chr6-54867545-2	chr6	54867436	54867636	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50620.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	9.69	3.52	14.26	16.89	22.09	14.74	15.61	18.0	7.08	5.02	6.03	1.25
Merged-chr1-170936495-1	chr1	170936395	170936595	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8912.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	7.27	1.26	3.42	0.8	9.41	0.94	5.65	6.87	4.72	1.0	0.0	6.89
Merged-chr10-93336219-2	chr10	93336126	93336326	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038014)	promoter-TSS (NR_038014)	15.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	9.69	5.03	10.27	14.88	20.86	21.64	21.26	16.91	9.05	4.52	11.05	1.57
Merged-chr10-119052659-1	chr10	119052559	119052759	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR81A|LTR|Gypsy	-2160.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	3.63	4.53	2.28	6.44	11.45	5.64	2.66	7.71	6.88	12.55	7.03	4.7
Merged-chr1-64081484-1	chr1	64081384	64081584	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-38983.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	4.44	2.77	3.99	4.42	3.27	9.09	7.64	10.54	7.87	2.01	9.04	4.07
Merged-chr16-90385861-1	chr16	90385761	90385961	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	-536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	2.83	5.28	7.99	3.22	6.95	9.09	3.32	8.19	2.95	9.54	6.53	10.65
Merged-chr8-120697278-1	chr8	120697178	120697378	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28958.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.63	1.01	5.7	2.41	6.55	1.57	13.62	8.3	4.13	6.03	9.04	3.76
Merged-chr17-24687475-3	chr17	24687374	24687574	+	820.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011522, intron 2 of 3)	CpG	2475.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	12.11	5.79	6.28	4.83	9.82	13.17	7.97	13.63	10.23	13.56	15.07	6.58
Merged-chr11-46479500-3	chr11	46479397	46479597	+	820.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	24566.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	12.92	7.29	23.39	11.26	15.14	10.03	9.63	23.72	7.87	10.54	19.09	6.27
Merged-chr14-77037791-4	chr14	77037624	77037824	+	820.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175369, intron 1 of 5)	intron (NM_175369, intron 1 of 5)	952.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	13.73	5.53	6.85	8.04	9.82	7.84	3.65	12.56	10.03	5.52	11.56	10.65
Merged-chr6-117917716-2	chr6	117917622	117917822	+	820.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166431, intron 2 of 2)	intron (NM_001166431, intron 2 of 2)	428.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	9.29	5.28	0.57	2.41	7.77	11.29	4.65	7.74	11.6	13.56	17.59	8.14
Merged-chr1-107506375-1	chr1	107506275	107506475	+	820.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5048.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	7.67	3.02	5.7	5.63	9.41	10.03	5.98	11.19	4.72	5.02	11.05	10.65
Merged-chr1-106901653-3	chr1	106901568	106901768	+	820.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32781.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	7.27	6.54	7.99	14.48	14.32	10.66	5.31	13.49	13.18	10.54	14.57	15.04
Merged-chr18-79327762-3	chr18	79327599	79327799	+	820.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218308.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.23	8.3	10.84	8.45	8.18	9.09	5.98	15.11	9.05	6.53	16.08	10.02
Merged-chr7-45536231-3	chr7	45536134	45536334	+	820.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148927, intron 6 of 19)	RMER16_Mm|LTR|ERVK	9904.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	8.88	10.56	11.41	8.04	16.77	28.54	10.63	7.68	24.59	16.07	33.16	14.72
Merged-chr1-151926282-2	chr1	151926190	151926390	+	820.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	164030.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	1.01	1.14	3.22	18.41	14.74	6.31	9.93	9.05	8.03	13.06	8.77
Merged-chrX-136277804-3	chrX	136277715	136277915	+	820.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7562.0	NM_001110234	12070.0	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	8.08	12.07	10.27	15.69	21.27	12.23	20.59	29.33	10.62	18.58	20.1	13.47
Merged-chr11-16986856-5	chr11	16986763	16986963	+	820.342834	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 6 of 9)	intron (NM_019549, intron 6 of 9)	21855.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.4	5.79	1.14	4.83	3.68	5.96	6.64	2.58	7.47	8.03	6.03	3.13
Merged-chr4-11088779-2	chr4	11088657	11088857	+	820.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12552.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	10.9	5.79	2.85	8.45	13.5	15.05	12.95	13.93	4.92	10.04	9.04	4.07
Merged-chr10-127514371-2	chr10	127514279	127514479	+	820.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-560.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	13.73	6.54	7.42	9.25	14.32	15.68	9.3	13.15	3.74	3.51	1.0	3.76
Merged-chr17-47715265-2	chr17	47715158	47715358	+	820.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11584.0	NM_025973	109820.0	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	6.06	10.06	3.42	4.42	4.09	11.92	7.97	4.54	30.09	17.07	33.67	14.41
Merged-chrX-36082489-1	chrX	36082389	36082589	+	820.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29619.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	8.88	4.53	12.55	5.23	5.32	7.21	9.63	7.4	11.21	7.53	19.6	3.45
Merged-chr15-58682215-1	chr15	58682115	58682315	+	820.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.27	4.02	2.28	3.62	12.27	5.02	5.31	11.24	7.08	13.56	4.02	4.07
Merged-chr4-3647745-3	chr4	3647629	3647829	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8777.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	6.06	12.58	19.4	10.05	14.32	6.9	14.62	18.67	13.57	8.03	29.65	19.74
Merged-chr14-103720835-3	chr14	103720750	103720950	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21418.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.86	9.56	2.28	7.64	10.64	15.37	8.97	9.67	11.8	12.55	13.57	5.95
Merged-chr17-12781389-3	chr17	12781290	12781490	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-11684.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	7.27	7.55	13.69	5.23	24.96	17.87	19.93	16.23	17.9	10.54	16.08	1.88
Merged-chr1-151096128-3	chr1	151095973	151096173	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41961.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	1.21	9.56	1.71	12.87	3.27	5.33	5.31	7.15	4.72	7.03	7.03	5.01
Merged-chr9-22054520-3	chr9	22054418	22054618	+	820.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2495.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	3.23	8.05	9.7	8.45	17.18	34.49	8.64	29.66	28.91	13.05	30.15	9.4
Merged-chr2-174086498-3	chr2	174086397	174086597	+	820.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	9446.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	9.69	3.27	13.12	5.23	12.68	18.5	11.63	20.16	21.05	14.56	11.56	13.47
Merged-chr2-44979582-4	chr2	44979521	44979721	+	820.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43556.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	10.9	13.33	3.42	10.46	8.59	11.92	7.64	2.33	4.52	7.53	7.54	6.27
Merged-chr13-52277408-3	chr13	52277304	52277504	+	820.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180663.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	12.52	5.53	15.4	10.46	13.09	23.52	18.93	27.36	12.0	10.04	26.63	14.41
Merged-chr17-86969829-3	chr17	86969746	86969946	+	820.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	6735.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	14.13	9.31	9.13	13.67	24.96	14.11	5.65	20.36	10.23	12.05	18.09	15.04
Merged-chr4-32768225-3	chr4	32768109	32768309	+	820.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081392, intron 96 of 101)	(TG)n|Simple_repeat|Simple_repeat	-32050.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	14.54	8.3	11.98	22.12	13.09	13.17	30.89	30.67	10.82	10.54	13.06	12.84
Merged-chr11-100396781-4	chr11	100396776	100396976	+	820.270813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	914.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	2.42	4.28	7.99	1.61	20.46	12.23	3.32	6.34	7.67	11.05	5.53	10.65
Merged-chr5-114567886-3	chr5	114567795	114567995	+	820.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-356.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	6.86	10.82	13.12	9.25	13.09	2.51	8.3	11.41	11.01	16.57	16.08	12.22
Merged-chr15-27987898-1	chr15	27987798	27987998	+	820.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	37950.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.23	4.28	3.99	7.64	11.86	5.96	9.3	12.81	6.29	4.52	10.55	4.7
Merged-chr1-89235540-2	chr1	89235449	89235649	+	820.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	165134.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	6.86	9.31	13.69	14.48	13.09	7.53	6.98	11.5	11.8	8.03	6.53	5.95
Merged-chr2-148440066-3	chr2	148439977	148440177	+	820.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010740, exon 2 of 2)	3' UTR (NM_010740, exon 2 of 2)	3458.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	11.71	10.56	16.54	6.03	22.09	6.9	16.28	17.83	15.74	12.55	16.08	10.65
Merged-chr9-83957068-3	chr9	83956984	83957184	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199195, intron 3 of 10)	intron (NM_199195, intron 3 of 10)	8303.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	8.08	14.09	10.27	4.02	7.77	14.42	10.96	11.86	16.52	10.54	29.65	7.52
Merged-chr11-103359265-3	chr11	103359181	103359381	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183288)	TTS (NM_183288)	4411.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	12.92	14.84	10.27	9.65	11.05	13.8	7.97	12.11	13.77	13.56	19.09	8.46
Merged-chr11-4639017-3	chr11	4638935	4639135	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	1242.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	10.9	12.07	10.84	4.83	14.32	14.42	1.0	10.68	12.19	12.55	11.05	5.01
Merged-chr10-62132815-3	chr10	62132717	62132917	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009719)	promoter-TSS (NM_009719)	-273.0	NM_009719	11925.0	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	12.52	10.31	17.11	21.32	11.05	9.09	7.97	15.31	7.87	10.54	21.61	6.27
Merged-chr17-83215776-4	chr17	83215709	83215909	+	820.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134117, exon 1 of 7)	exon (NM_134117, exon 1 of 7)	526.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	1.21	1.26	2.85	2.01	4.91	2.82	8.64	4.01	5.9	13.05	7.03	5.95
Merged-chr19-37546964-3	chr19	37546860	37547060	+	820.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3458.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	16.15	15.85	4.56	21.32	6.95	9.09	7.31	10.26	12.0	12.55	19.09	9.71
Merged-chr12-32767058-3	chr12	32766950	32767150	+	820.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53285.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	16.56	18.86	16.54	8.45	14.32	7.21	8.64	14.07	17.11	10.54	14.57	13.78
Merged-chr1-16618763-3	chr1	16618689	16618889	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271016, intron 1 of 6)	CpG	549.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	9.69	13.58	8.56	13.27	6.95	18.81	12.29	7.68	18.1	27.11	17.59	16.92
Merged-chr12-16920745-1	chr12	16920645	16920845	+	820.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25767.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	8.88	6.54	5.7	5.63	10.64	12.23	10.3	8.69	5.51	7.53	6.03	2.51
Merged-chr10-127561407-3	chr10	127561369	127561569	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-26910.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.65	6.04	15.97	6.44	5.32	10.03	5.65	3.64	10.62	10.54	11.05	7.83
Merged-chr6-97511874-3	chr6	97511784	97511984	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-24064.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	10.5	11.32	1.71	6.44	4.91	9.41	5.65	5.92	15.14	11.55	9.04	4.39
Merged-chr4-6222206-3	chr4	6222121	6222321	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31116.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	6.86	6.79	7.99	2.41	4.5	6.59	12.62	12.81	180.56	144.61	243.7	112.46
Merged-chr17-70996149-1	chr17	70996049	70996249	+	820.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357820, exon 3 of 4)	exon (NM_001357820, exon 3 of 4)	1863.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	8.08	4.78	2.85	4.83	11.45	13.48	11.29	8.5	0.79	0.0	0.5	2.51
Merged-chr9-70392699-2	chr9	70392603	70392803	+	820.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13050.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	15.75	9.06	14.26	16.49	8.59	18.19	10.63	11.33	1.97	1.0	3.52	0.63
Merged-chr18-46536812-3	chr18	46536720	46536920	+	820.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-10849.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	12.92	9.31	7.99	11.66	9.0	13.48	9.97	9.84	16.52	3.01	13.06	10.34
Merged-chr16-91352259-3	chr16	91352147	91352347	+	820.1611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20536.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	10.9	10.56	8.56	6.44	7.36	21.01	7.31	11.27	15.14	21.09	10.05	12.22
Merged-chr18-64510251-3	chr18	64510154	64510354	+	820.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142950, intron 6 of 14)	intron (NM_001142950, intron 6 of 14)	6303.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	11.31	9.56	6.28	8.04	26.18	15.05	12.95	16.01	8.26	12.05	17.08	11.28
Merged-chr8-123287550-3	chr8	123287456	123287656	+	820.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016925, intron 26 of 42)	intron (NM_016925, intron 26 of 42)	31020.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	8.48	12.07	20.54	12.87	9.41	11.6	6.64	8.61	14.36	15.57	20.6	6.89
Merged-chr10-96173110-3	chr10	96172999	96173199	+	820.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53108.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	11.31	7.55	25.67	14.08	15.14	19.76	15.94	28.46	24.39	13.05	19.6	9.4
Merged-chr5-99582208-3	chr5	99582105	99582305	+	820.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	146855.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	6.86	9.56	16.54	9.65	16.77	10.35	9.3	26.27	8.85	11.05	22.11	9.08
Merged-chr14-101662106-3	chr14	101661999	101662199	+	820.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016723, intron 2 of 8)	CT-rich|Low_complexity|Low_complexity	8132.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	13.33	9.81	3.99	3.22	11.45	7.53	13.29	15.76	7.47	17.57	12.56	9.71
Merged-chr13-60602647-3	chr13	60602534	60602734	+	820.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	CpG-3949	423.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	10.5	4.53	10.27	10.05	7.36	11.92	15.28	19.51	7.28	11.05	18.09	10.65
Merged-chr6-114395507-2	chr6	114395400	114395600	+	820.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2436.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	10.09	4.28	5.13	2.82	9.41	7.21	12.29	8.07	10.82	7.03	7.03	9.4
Merged-chr17-5887021-2	chr17	5886917	5887117	+	820.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025664, exon 2 of 18)	exon (NM_025664, exon 2 of 18)	45637.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	9.69	3.27	12.55	16.49	13.5	7.53	17.61	21.84	2.95	3.01	3.01	3.45
Merged-chr2-166522682-3	chr2	166522512	166522712	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X1_LINE|LINE|CR1	-41910.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	7.27	8.3	15.4	10.86	5.32	9.72	4.65	8.55	7.67	7.53	11.56	5.95
Merged-chr13-112752401-3	chr13	112752324	112752524	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48353.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	9.69	6.29	5.13	4.83	15.14	11.29	16.28	12.56	20.46	16.07	22.61	10.65
Merged-chr5-65086703-3	chr5	65086593	65086793	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-20875.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	12.11	7.29	19.97	4.42	11.86	5.96	16.94	17.02	20.46	11.55	23.62	14.72
Merged-chr2-32537774-3	chr2	32537664	32537864	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	MIRb|SINE|MIR	2405.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	14.13	6.79	18.25	9.65	11.05	10.35	7.64	16.99	14.36	6.03	12.06	14.41
Merged-chr7-30353583-3	chr7	30353475	30353675	+	820.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9197.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	24.63	14.84	22.82	13.27	20.46	14.42	6.98	12.53	8.06	7.53	8.54	5.01
Merged-chr16-76304865-2	chr16	76304774	76304974	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	68175.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	7.27	3.27	2.85	15.69	4.5	10.35	6.64	18.0	9.44	2.51	21.1	5.33
Merged-chr12-28732379-1	chr12	28732279	28732479	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	18015.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	7.27	2.52	2.28	2.01	4.91	6.27	4.65	7.96	13.77	7.03	6.03	5.95
Merged-chr1-70858802-1	chr1	70858702	70858902	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177164, intron 3 of 3)	RMER15|LTR|ERVL	133087.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.4	1.01	4.56	13.67	6.14	3.76	5.65	9.95	6.29	3.01	12.06	3.13
Merged-chr2-75703049-2	chr2	75702924	75703124	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	1639.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.86	2.52	2.28	3.22	3.68	4.39	4.65	5.19	12.19	8.03	11.56	2.82
Merged-chr6-142710982-1	chr6	142710882	142711082	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8708.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	1.76	9.13	3.22	12.27	8.15	6.64	11.21	5.31	6.03	4.52	6.89
Merged-chr12-17591433-1	chr12	17591333	17591533	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV-int|LTR|ERVK	46560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	0.5	0.0	1.61	0.0	1.25	0.0	0.0	3.34	7.53	16.08	12.53
Merged-chr3-121852211-1	chr3	121852111	121852311	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36909.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	5.65	3.52	13.12	7.64	5.73	2.51	10.3	7.09	4.13	6.03	10.05	6.58
Merged-chr13-109441105-1	chr13	109441005	109441205	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116361.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	7.27	5.28	6.85	4.83	9.82	8.47	9.63	9.64	2.95	7.53	6.03	6.58
Merged-chr9-86513523-1	chr9	86513423	86513623	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177208, intron 16 of 38)	intron (NM_177208, intron 16 of 38)	46369.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	1.62	4.53	9.7	4.42	6.55	9.41	8.3	10.37	7.67	10.54	12.06	7.21
Merged-chr3-127331738-1	chr3	127331638	127331838	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	MTC|LTR|ERVL-MaLR	77320.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.0	1.14	0.8	2.45	0.0	1.33	0.59	13.37	9.04	23.62	11.9
Merged-chr15-88201700-1	chr15	88201600	88201800	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-113174.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.5	1.71	0.4	8.59	0.31	1.99	7.99	0.0	0.0	0.0	0.63
Merged-chr2-152653314-1	chr2	152653214	152653414	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16147.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	4.04	1.76	6.85	0.0	4.91	7.53	9.3	13.88	1.97	0.0	2.01	5.01
Merged-chr13-88810305-2	chr13	88810188	88810388	+	820.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11184.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	9.29	8.3	15.4	14.48	6.14	0.63	5.98	5.47	15.93	16.07	26.63	9.4
Merged-chr14-46176007-1	chr14	46175907	46176107	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91980.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.0	1.01	1.14	0.0	8.18	3.14	8.97	7.57	0.0	0.0	0.0	1.25
Merged-chr15-5870075-1	chr15	5869975	5870175	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	174629.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	1.62	3.77	3.42	5.63	11.05	3.45	2.99	8.16	3.74	9.04	4.52	4.39
Merged-chr11-22436423-2	chr11	22436329	22436529	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-75854.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.65	2.01	0.0	3.22	31.5	40.45	21.92	40.51	10.03	11.05	7.03	10.02
Merged-chr16-50736381-1	chr16	50736281	50736481	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3608.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	2.42	3.02	2.85	3.22	3.27	10.66	4.65	5.92	4.33	8.03	5.53	5.01
Merged-chr3-79179797-1	chr3	79179697	79179897	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CACAA)n|Simple_repeat|Simple_repeat	-33122.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.23	2.01	3.42	2.41	3.68	4.08	1.66	2.33	12.0	4.52	11.05	2.51
Merged-chr8-41002112-1	chr8	41002012	41002212	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 8 of 13)	B1F1|SINE|Alu	-15356.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.04	5.03	3.99	4.02	4.91	3.14	8.97	5.44	15.14	3.01	11.56	12.22
Merged-chr14-76072772-2	chr14	76072664	76072864	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38051.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	4.04	2.01	5.13	7.64	7.77	4.08	4.32	8.07	8.26	4.02	22.61	10.34
Merged-chr9-75283062-2	chr9	75282958	75283158	+	820.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081322, intron 25 of 40)	intron (NM_001081322, intron 25 of 40)	-23230.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	4.85	8.05	2.28	12.47	3.68	10.03	4.65	8.21	8.06	2.01	2.01	2.51
Merged-chr5-115272262-1	chr5	115272162	115272362	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016698, exon 1 of 17)	exon (NM_016698, exon 1 of 17)	633.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	3.23	5.79	4.56	4.42	5.32	7.53	3.32	5.33	5.51	6.53	6.53	10.34
Merged-chr2-72373817-3	chr2	72373693	72373893	+	819.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	88092.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.65	16.1	25.67	15.28	9.41	20.38	8.3	5.58	30.49	20.08	13.06	9.4
Merged-chr12-54835192-2	chr12	54835083	54835283	+	819.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27694.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.81	6.04	3.42	3.62	14.73	4.7	8.64	12.56	14.16	14.06	14.57	5.64
Merged-chr17-27790174-3	chr17	27790055	27790255	+	819.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	30387.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	8.88	10.06	25.1	10.05	9.41	10.66	8.3	21.45	14.16	5.52	11.05	9.08
Merged-chr12-100841375-2	chr12	100841278	100841478	+	819.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361020, exon 6 of 14)	exon (NM_001361020, exon 6 of 14)	58146.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.85	11.82	4.56	7.64	11.45	7.84	4.98	10.93	25.96	12.05	18.09	19.11
Merged-chr10-87552883-3	chr10	87552775	87552975	+	819.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008777, intron 3 of 12)	intron (NM_008777, intron 3 of 12)	31080.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	12.52	8.3	9.13	9.65	16.77	11.92	6.98	9.59	13.18	10.54	10.05	11.59
Merged-chr2-153586738-3	chr2	153586641	153586841	+	819.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46040.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	14.54	10.31	11.98	9.65	9.41	11.92	3.99	8.24	12.19	12.55	17.08	12.22
Merged-chr6-37842968-3	chr6	37842879	37843079	+	819.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27832.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	8.88	8.3	25.67	8.85	8.59	8.78	11.29	20.75	12.0	15.06	20.6	16.6
Merged-chrX-98890998-3	chrX	98890898	98891098	+	819.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313754)	promoter-TSS (NM_001313754)	27.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	23.82	4.02	10.27	13.27	13.5	9.72	16.28	16.46	8.06	17.07	17.08	9.08
Merged-chr4-43524360-2	chr4	43524243	43524443	+	819.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-789.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	11.71	7.29	3.42	4.02	18.0	5.64	6.64	6.59	13.57	23.1	13.06	11.9
Merged-chr19-58354193-2	chr19	58354094	58354294	+	819.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285457, intron 4 of 9)	intron (NM_001285457, intron 4 of 9)	57990.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	18.98	13.58	19.97	23.73	8.18	6.27	5.98	12.64	7.67	8.54	5.53	4.07
Merged-chr15-62079565-3	chr15	62079457	62079657	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40300.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	8.48	10.82	6.85	15.28	10.23	6.59	16.94	16.51	13.37	23.1	18.09	17.23
Merged-chr19-16874703-1	chr19	16874603	16874803	+	819.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008023)	promoter-TSS (NM_008023)	-873.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	0.81	2.52	2.28	1.61	9.82	9.09	12.95	10.01	7.28	7.53	2.51	10.34
Merged-chr11-118227846-3	chr11	118227750	118227950	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-15108.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.88	6.54	9.13	20.51	21.68	15.05	37.2	47.61	10.23	7.53	23.62	12.84
Merged-chrX-140513620-3	chrX	140513518	140513718	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29050.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	4.85	4.78	21.11	9.65	20.05	12.54	9.97	19.43	4.52	3.01	24.12	9.08
Merged-chr1-72229170-1	chr1	72229070	72229270	+	819.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14823.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	9.29	1.01	5.7	4.83	14.73	8.47	15.61	12.45	5.11	5.52	15.07	6.89
Merged-chr17-47672614-2	chr17	47672517	47672717	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198421, exon 3 of 7)	exon (NM_198421, exon 3 of 7)	-14993.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	9.69	12.07	17.11	9.65	11.45	10.98	7.97	12.42	4.13	4.52	5.53	4.7
Merged-chr2-16356239-3	chr2	16356295	16356495	+	819.796326	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	91.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	8.08	7.29	7.99	18.9	9.82	12.54	28.23	17.83	8.26	6.53	6.53	8.46
Merged-chr1-65177198-3	chr1	65177104	65177304	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1938.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	12.92	6.79	7.42	8.45	11.86	13.48	8.3	11.83	14.36	19.08	13.57	6.89
Merged-chr6-73210618-3	chr6	73210523	73210723	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164669, intron 2 of 76)	ORR1D1|LTR|ERVL-MaLR	11008.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	12.11	8.3	9.7	6.84	18.0	8.15	6.31	14.8	34.03	36.15	31.15	20.99
Merged-chr6-83356743-3	chr6	83356653	83356853	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175277, intron 3 of 3)	intron (NM_175277, intron 3 of 3)	7269.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	6.86	11.07	22.25	8.04	8.18	24.77	7.64	10.65	22.03	16.07	21.61	10.96
Merged-chr11-82571620-3	chr11	82571524	82571724	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61729.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	17.36	10.06	25.1	14.08	15.14	17.56	7.64	16.49	24.19	10.54	11.56	13.16
Merged-chr11-75459392-3	chr11	75459377	75459577	+	819.771423	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2062.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	6.06	5.53	5.7	6.03	5.73	8.78	9.3	6.84	11.6	7.53	8.04	8.77
Merged-chr3-101812730-2	chr3	101812616	101812816	+	819.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172295)	TTS (NM_172295)	23507.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	10.9	13.33	10.27	8.04	7.77	13.48	7.97	12.25	6.49	7.53	4.02	5.95
Merged-chr1-171276534-2	chr1	171276422	171276622	+	819.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008911)	TTS (NM_008911)	4664.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	12.52	17.36	4.56	11.26	14.32	15.68	8.3	16.43	1.77	3.01	3.01	3.45
Merged-chr2-73007583-2	chr2	73007492	73007692	+	819.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-27146.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	11.31	5.03	6.85	9.25	12.68	6.9	10.63	17.75	11.41	12.05	16.08	12.84
Merged-chr18-75459531-1	chr18	75459431	75459631	+	819.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-55114.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	6.46	5.53	8.56	7.64	11.05	6.59	1.99	4.85	1.18	1.51	4.02	5.33
Merged-chr18-35495586-3	chr18	35495493	35495693	+	819.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	3332.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	12.11	8.55	11.41	16.89	4.5	6.59	6.98	5.07	12.98	12.55	8.04	12.22
Merged-chr9-89202381-3	chr9	89202251	89202451	+	819.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	3078.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	11.31	4.28	5.13	10.46	12.27	13.48	6.64	3.93	13.37	16.07	16.08	8.46
Merged-chr7-48928580-2	chr7	48928489	48928689	+	819.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30484.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.63	4.53	4.56	10.46	7.36	10.66	10.96	9.45	7.87	15.57	22.61	5.33
Merged-chr9-25483352-4	chr9	25483212	25483412	+	819.69165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1715.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.85	5.53	9.13	3.22	10.64	4.08	7.97	7.88	8.85	9.04	10.05	6.89
Merged-chr1-7111686-1	chr1	7111586	7111786	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	22766.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	5.65	3.77	5.13	4.83	6.14	7.84	10.96	7.65	11.6	8.03	8.54	6.89
Merged-chr13-42101607-3	chr13	42101496	42101696	+	819.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49575.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.48	11.07	9.13	6.84	9.82	4.7	6.31	7.54	15.74	12.55	15.58	8.14
Merged-chr8-57780784-1	chr8	57780684	57780884	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-127729.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	6.46	3.77	2.28	9.65	9.0	2.51	9.3	17.33	6.29	2.01	18.09	3.45
Merged-chrX-109208018-3	chrX	109207914	109208114	+	819.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	11258.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	12.92	10.56	16.54	14.88	11.86	8.47	2.99	15.62	10.23	13.05	16.08	7.21
Merged-chr4-35220339-1	chr4	35220239	35220439	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	5541.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	5.25	5.79	5.13	1.61	4.5	13.17	3.99	3.17	8.26	5.52	7.54	5.33
Merged-chr11-62217850-1	chr11	62217750	62217950	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029936, intron 12 of 12)	intron (NM_001029936, intron 12 of 12)	-31134.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	2.42	8.55	7.42	6.84	7.36	10.98	6.64	10.65	5.7	6.53	6.03	5.64
Merged-chr17-33995101-1	chr17	33995001	33995201	+	819.666687	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001347346)	TTS (NM_001347346)	5232.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	10.9	15.59	7.42	6.44	6.95	6.27	0.0	0.81	8.06	4.52	4.52	1.88
Merged-chr10-8842970-1	chr10	8842870	8843070	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	43100.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.62	5.53	5.13	8.45	9.41	8.78	7.31	10.29	10.23	8.03	4.02	2.51
Merged-chr10-21621769-2	chr10	21621658	21621858	+	819.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	28613.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.44	5.28	13.12	4.42	9.41	7.53	9.3	11.36	17.51	15.57	11.56	4.7
Merged-chr2-26122751-3	chr2	26122656	26122856	+	819.6444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026495)	promoter-TSS (NM_026495)	55.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	10.5	12.58	9.7	6.03	15.55	12.23	7.64	7.54	14.95	9.04	10.05	5.33
Merged-chr2-35327475-3	chr2	35327385	35327585	+	819.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9524.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.06	12.32	30.23	11.26	14.73	20.7	7.64	11.86	10.82	1.51	9.04	10.96
Merged-chr3-52767460-3	chr3	52767379	52767579	+	819.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	27755.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	7.67	7.55	5.7	12.87	8.18	10.35	8.64	25.74	23.6	16.07	27.64	15.04
Merged-chr6-115284301-2	chr6	115284212	115284412	+	819.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32107.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	2.42	1.51	3.42	5.23	19.64	20.07	24.25	19.23	10.42	17.07	13.57	10.65
Merged-chr5-5213621-2	chr5	5213526	5213726	+	819.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	52442.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.46	6.04	6.85	14.48	6.14	9.41	10.63	14.07	16.52	9.04	22.11	10.02
Merged-chr19-34522250-3	chr19	34522124	34522324	+	819.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5250.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.06	9.31	3.42	5.23	9.0	8.15	7.64	5.92	8.85	8.03	10.55	8.14
Merged-chr4-150608818-3	chr4	150608722	150608922	+	819.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	43352.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.86	9.56	22.25	10.46	19.64	12.23	16.61	28.57	15.93	9.54	17.08	10.96
Merged-chr14-118664421-3	chr14	118664276	118664476	+	819.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	MTC|LTR|ERVL-MaLR	12555.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	10.5	7.8	13.12	9.25	2.45	2.51	9.3	8.16	10.82	2.01	15.58	6.58
Merged-chr9-111083772-1	chr9	111083672	111083872	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26254.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.86	1.51	2.28	5.63	4.91	5.64	12.95	10.54	3.34	2.01	11.56	7.21
Merged-chr17-33503671-1	chr17	33503571	33503771	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20414.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	1.62	3.77	0.0	3.22	3.27	7.21	4.65	9.7	1.57	4.52	2.51	3.13
Merged-chr17-17585307-3	chr17	17585208	17585408	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	39181.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	14.94	7.8	13.69	9.65	25.77	12.54	7.31	13.07	12.39	8.54	19.6	3.13
Merged-chr10-57628765-3	chr10	57628638	57628838	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3243.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	19.79	5.53	8.56	25.74	7.77	10.98	10.63	19.77	12.19	10.54	15.58	7.52
Merged-chr1-45838454-1	chr1	45838354	45838554	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43288.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.65	0.5	6.85	11.66	4.09	5.96	6.98	9.14	6.1	3.01	13.57	2.19
Merged-chr14-52446072-2	chr14	52445974	52446174	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4319.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	5.65	7.04	13.69	25.74	14.73	12.23	23.25	24.25	0.39	0.5	0.0	0.31
Merged-chr9-7270312-1	chr9	7270212	7270412	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2202.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.42	2.01	4.56	3.22	5.73	6.9	5.65	12.08	3.93	0.5	11.56	2.82
Merged-chr7-80640757-1	chr7	80640657	80640857	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	4740.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.44	5.53	6.85	6.84	1.64	4.39	10.63	8.83	10.03	4.02	6.03	5.01
Merged-chr2-26141101-1	chr2	26141001	26141201	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256521)	promoter-TSS (NM_001256521)	-595.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	10.5	6.29	2.28	2.82	9.0	7.84	5.31	7.21	10.03	3.51	3.52	7.21
Merged-chr2-11706857-1	chr2	11706757	11706957	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	1145.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	8.08	5.03	3.42	2.82	8.59	10.66	1.66	10.65	7.28	9.54	7.03	4.39
Merged-chr1-193600083-1	chr1	193599983	193600183	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-92553.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	2.42	1.01	2.28	2.01	9.82	6.9	6.98	14.75	1.18	0.0	4.52	0.0
Merged-chr7-110386488-3	chr7	110386407	110386607	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	164804.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	10.09	17.86	15.97	13.27	11.05	8.47	11.29	11.52	11.6	6.03	6.03	7.52
Merged-chr4-145201631-3	chr4	145201530	145201730	+	819.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6625.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.06	4.78	9.13	9.65	34.36	19.13	26.24	37.37	13.96	7.03	16.08	13.47
Merged-chr13-104041200-3	chr13	104041098	104041298	+	819.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029447, intron 9 of 12)	intron (NM_029447, intron 9 of 12)	68416.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	18.17	9.31	26.24	11.26	15.14	15.68	7.31	23.22	23.21	4.52	23.11	10.34
Merged-chr9-15395532-3	chr9	15395416	15395616	+	819.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-37728.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	6.06	6.79	12.55	8.45	13.91	15.99	5.98	9.9	13.18	18.08	21.1	9.71
Merged-chr2-32488852-2	chr2	32488739	32488939	+	819.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37369.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	8.08	7.04	7.99	4.83	12.27	11.92	1.99	7.07	6.88	5.02	10.05	8.77
Merged-chr3-116206105-2	chr3	116206003	116206203	+	819.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47381.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	12.52	6.54	12.55	11.66	6.14	11.92	23.92	32.94	9.05	9.04	6.03	10.96
Merged-chr17-28012965-3	chr17	28012861	28013061	+	819.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67623.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	11.71	4.53	14.83	16.49	15.55	24.15	10.96	15.39	10.62	7.03	10.05	4.7
Merged-chr3-148989489-3	chr3	148989402	148989602	+	819.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34867.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	11.31	10.31	11.41	20.51	14.73	14.11	14.28	22.09	5.7	6.03	9.55	9.08
Merged-chr10-77627702-3	chr10	77627603	77627803	+	819.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	5382.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	10.09	15.09	5.13	17.7	12.68	20.07	6.64	15.87	11.6	21.59	17.08	10.34
Merged-chr2-160086178-2	chr2	160086089	160086289	+	819.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69536.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	11.31	7.8	2.28	8.04	7.77	30.1	10.63	11.1	7.08	16.57	9.04	3.13
Merged-chr8-125587257-1	chr8	125587157	125587357	+	819.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015535, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	2619.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	4.04	5.53	9.13	4.83	8.18	5.02	5.98	7.18	2.75	2.51	3.01	1.57
Merged-chr16-43578519-3	chr16	43578415	43578615	+	819.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-62140.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	12.92	4.02	14.83	11.26	15.14	11.92	19.6	17.89	18.29	3.01	21.61	9.4
Merged-chr6-54973016-3	chr6	54972917	54973117	+	819.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172729)	promoter-TSS (NM_172729)	-405.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	10.09	6.79	7.99	13.27	11.45	8.78	0.66	9.31	15.74	7.03	23.11	2.82
Merged-chr11-5369344-1	chr11	5369244	5369444	+	819.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	12396.0	NM_001290501	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	6.86	4.28	4.56	5.23	13.09	5.64	7.31	10.63	7.08	3.01	7.03	7.21
Merged-chr3-153260774-3	chr3	153260666	153260866	+	819.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	37883.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	10.9	6.79	18.83	18.5	19.64	10.03	14.95	14.36	22.03	20.59	23.11	7.83
Merged-chr14-45179810-3	chr14	45179703	45179903	+	819.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 7 of 20)	intron (NM_001310534, intron 7 of 20)	39622.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	11.31	4.53	22.82	26.95	21.68	11.29	15.94	37.18	13.77	10.04	12.06	11.9
Merged-chr14-46734957-3	chr14	46734853	46735053	+	819.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25588.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	14.13	11.32	22.82	10.05	5.32	10.35	7.97	14.05	15.14	5.52	13.06	5.64
Merged-chr7-80184443-3	chr7	80184364	80184564	+	819.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-2377.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	10.5	12.07	13.12	12.47	6.14	5.33	5.98	2.64	11.01	9.54	8.04	9.4
Merged-chr7-16902112-1	chr7	16902012	16902212	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	7.67	4.53	0.57	10.05	7.77	6.27	8.64	7.6	2.16	7.03	6.53	5.01
Merged-chr15-99395562-2	chr15	99395401	99395601	+	819.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	B3|SINE|B2	2282.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	6.46	4.28	6.28	2.41	2.86	5.64	4.65	6.25	5.51	3.51	3.52	1.25
Merged-chr6-73808387-1	chr6	73808287	73808487	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-337366.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.81	3.52	5.7	16.09	9.41	8.15	10.96	22.68	1.97	2.01	2.51	4.39
Merged-chr15-88146268-1	chr15	88146168	88146368	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168606.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	4.04	3.52	0.57	4.02	9.0	4.7	7.64	9.98	0.0	0.5	1.51	1.88
Merged-chr9-90126849-3	chr9	90126755	90126955	+	819.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12035.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	7.67	10.31	9.7	8.85	10.64	10.98	2.99	10.57	17.51	16.07	16.08	9.4
Merged-chr12-77047438-1	chr12	77047338	77047538	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85190.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.27	5.53	20.54	10.86	10.23	9.41	8.3	9.48	6.1	4.02	19.09	3.13
Merged-chr15-102742776-3	chr15	102742666	102742866	+	819.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4143.0	NR_104334	102216269.0		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	13.73	4.78	3.42	7.24	16.36	14.74	5.98	12.87	13.77	7.03	19.6	8.77
Merged-chr2-131166036-3	chr2	131165918	131166118	+	819.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-5937.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	10.9	6.54	7.42	15.69	3.68	4.08	7.97	10.09	8.46	6.53	15.58	11.9
Merged-chr13-30933192-2	chr13	30933091	30933291	+	819.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025588, intron 4 of 27)	intron (NM_025588, intron 4 of 27)	14570.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.81	4.02	5.7	4.02	7.77	7.21	1.66	11.05	11.8	6.03	7.54	10.96
Merged-chr10-117825057-2	chr10	117824953	117825153	+	819.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	20921.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.65	6.04	6.85	6.84	19.23	13.48	8.64	10.88	12.78	11.55	13.06	10.02
Merged-chr7-19506517-3	chr7	19506406	19506606	+	819.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177692, exon 2 of 2)	3' UTR (NM_177692, exon 2 of 2)	1825.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	10.5	10.31	12.55	17.29	9.0	9.72	4.98	14.61	9.44	11.55	19.09	10.65
Merged-chr3-89865176-2	chr3	89865084	89865284	+	819.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33814.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	6.06	5.53	7.42	8.45	9.0	11.29	4.65	6.59	12.59	6.53	11.05	8.46
Merged-chrX-109117047-2	chrX	109116943	109117143	+	819.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	Lx8|LINE|L1	21636.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	5.65	5.03	13.12	6.84	7.36	16.93	15.28	7.88	10.62	15.06	8.04	2.19
Merged-chr8-122948933-3	chr8	122948832	122949032	+	819.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	93352.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	12.52	5.53	7.42	10.86	9.82	4.7	4.98	6.9	14.75	9.54	4.52	10.34
Merged-chr8-3665690-2	chr8	3665592	3665792	+	819.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-70.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	1.62	1.51	0.57	2.82	9.0	10.35	19.6	11.07	9.83	12.05	19.6	9.08
Merged-chr1-34716026-2	chr1	34715911	34716111	+	819.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79801.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.0	0.0	0.0	0.0	11.86	13.17	7.97	12.14	10.23	15.06	20.6	12.84
Merged-chr10-80824062-3	chr10	80823940	80824140	+	819.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2616.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	5.65	8.05	21.68	11.26	9.0	10.03	4.32	10.65	12.0	14.06	9.04	9.71
Merged-chr19-43711776-3	chr19	43711685	43711885	+	819.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053103, exon 6 of 13)	exon (NM_053103, exon 6 of 13)	22096.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	10.09	7.29	11.98	8.04	6.55	14.42	10.96	10.07	14.36	6.53	22.11	9.4
Merged-chr10-84443571-3	chr10	84443461	84443661	+	819.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3090.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	8.88	6.79	8.56	23.33	14.73	11.92	12.95	19.54	9.83	11.55	17.08	10.65
Merged-chr1-120038856-3	chr1	120038771	120038971	+	819.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 5 of 13)	intron (NM_001012322, intron 5 of 13)	31891.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	7.27	5.03	5.13	8.04	11.05	2.2	11.29	11.83	13.96	17.57	21.1	11.9
Merged-chr3-10466089-3	chr3	10466000	10466200	+	819.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25970.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	12.92	10.56	11.98	11.26	8.59	10.66	13.29	11.19	24.19	10.54	12.06	10.96
Merged-chr1-131525282-3	chr1	131525163	131525363	+	819.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081011, exon 2 of 23)	5' UTR (NM_001081011, exon 2 of 23)	2098.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	11.71	14.84	19.4	9.25	5.32	9.72	5.98	8.27	17.7	12.05	12.56	6.58
Merged-chr2-121413117-1	chr2	121413017	121413217	+	819.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	675.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	3.63	3.27	2.85	1.61	6.14	2.82	6.64	7.54	10.62	7.03	12.06	9.08
Merged-chr12-117516410-1	chr12	117516310	117516510	+	819.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175930)	promoter-TSS (NM_175930)	-69.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.27	4.02	1.71	1.21	4.91	5.96	1.99	1.85	12.59	3.01	13.06	2.51
Merged-chr1-191199285-2	chr1	191199192	191199392	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15959.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	14.13	8.05	5.13	5.63	8.18	12.86	10.63	9.48	9.44	3.51	7.03	4.39
Merged-chr3-101846292-1	chr3	101846192	101846392	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10069.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	2.42	2.77	9.7	6.84	10.23	0.63	8.3	8.21	6.49	6.53	7.54	1.57
Merged-chr2-35545166-1	chr2	35545066	35545266	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13292.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	1.21	0.5	0.0	0.0	0.0	3.14	1.33	1.18	1.77	3.51	2.01	1.88
Merged-chr4-136172173-3	chr4	136172063	136172263	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-111.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	14.94	12.83	9.13	20.91	17.59	14.11	9.97	6.53	16.92	7.03	10.55	8.77
Merged-chr17-5890574-1	chr17	5890474	5890674	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025664, intron 3 of 17)	intron (NM_025664, intron 3 of 17)	49194.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	3.63	11.32	9.13	4.42	5.32	6.9	4.65	9.0	7.67	8.03	7.54	5.95
Merged-chr11-79461023-2	chr11	79460959	79461159	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010897, intron 30 of 57)	intron (NM_010897, intron 30 of 57)	22972.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	6.06	5.03	8.56	13.67	6.55	5.02	4.65	4.68	2.16	2.51	2.51	3.76
Merged-chr2-150829956-1	chr2	150829856	150830056	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 19 of 19)	intron (NM_153781, intron 19 of 19)	12614.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.25	2.77	6.85	8.85	3.27	6.27	8.3	6.81	4.13	3.51	7.03	5.01
Merged-chr10-43037485-1	chr10	43037385	43037585	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-46323.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.4	3.02	3.42	3.62	5.73	2.2	6.98	6.53	9.24	5.52	10.55	13.16
Merged-chr10-121290204-2	chr10	121290108	121290308	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	21188.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	9.29	7.8	7.99	10.46	14.73	26.03	33.88	24.06	2.56	5.02	4.52	2.19
Merged-chr4-74362957-2	chr4	74362859	74363059	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 16 of 20)	L1MDa|LINE|L1	111080.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	16.96	6.54	3.42	4.83	13.09	6.9	5.65	13.71	13.37	7.53	7.03	10.65
Merged-chr1-59459100-1	chr1	59459000	59459200	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23047.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.81	1.26	2.28	0.8	12.68	5.02	1.99	7.26	1.77	2.01	1.0	1.88
Merged-chr7-19800922-1	chr7	19800822	19801022	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4113.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	5.25	4.02	3.99	3.62	13.91	11.92	4.32	5.75	8.65	14.06	4.02	3.13
Merged-chr18-62250696-3	chr18	62250583	62250783	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70583.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	17.77	9.31	17.11	16.49	20.86	20.38	2.99	8.92	20.46	10.54	13.06	10.65
Merged-chr18-69575508-3	chr18	69575401	69575601	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	229341.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.25	9.31	13.12	7.64	11.86	5.96	7.97	11.36	11.41	3.51	14.57	8.77
Merged-chr1-182271934-1	chr1	182271834	182272034	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10261.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.81	2.01	0.0	2.41	0.82	1.57	6.98	6.73	2.36	1.51	3.52	3.45
Merged-chr16-4308045-1	chr16	4307945	4308145	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009624, intron 5 of 10)	intron (NM_009624, intron 5 of 10)	78816.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	8.08	6.29	7.99	2.41	7.36	2.2	8.64	11.21	7.67	2.01	4.52	6.58
Merged-chr19-37059754-1	chr19	37059654	37059854	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198300, intron 8 of 10)	intron (NM_198300, intron 8 of 10)	-114089.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.81	1.01	2.28	0.8	4.5	2.82	5.31	6.9	3.54	7.03	6.53	4.07
Merged-chr17-47428991-1	chr17	47428891	47429091	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029296, intron 3 of 3)	intron (NM_029296, intron 3 of 3)	-7111.0	NM_001347584	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	5.25	2.77	7.99	4.42	4.91	7.21	5.31	8.89	8.46	4.02	4.02	3.76
Merged-chr17-45593761-1	chr17	45593661	45593861	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199113)	promoter-TSS (NM_001199113)	-121.0	NM_001199113	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.25	5.53	0.0	2.41	3.68	6.9	1.33	5.52	7.87	2.01	7.54	2.51
Merged-chr2-118053763-1	chr2	118053663	118053863	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 4 of 9)	LTR41B|LTR|ERVL	57439.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.06	2.01	2.28	2.82	6.14	9.09	5.65	7.96	2.36	5.52	4.02	7.21
Merged-chr16-49907529-1	chr16	49907429	49907629	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-48301.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	9.69	3.02	3.42	3.22	1.64	8.47	4.98	10.09	7.47	2.01	9.04	5.95
Merged-chr19-37428842-1	chr19	37428742	37428942	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-5999.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.65	3.02	5.7	8.85	4.09	6.27	4.98	6.64	4.33	7.03	4.52	4.07
Merged-chr3-136078764-3	chr3	136078661	136078861	+	818.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-238492.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	15.75	4.53	18.83	18.9	15.14	10.66	6.98	15.42	15.74	8.03	11.56	5.01
Merged-chr7-118118130-3	chr7	118118032	118118232	+	818.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019419)	TTS (NM_019419)	-1985.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	8.48	9.56	11.98	6.44	11.05	21.01	4.32	11.52	20.46	21.59	19.09	19.74
Merged-chr2-152793482-3	chr2	152793390	152793590	+	818.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34999.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.27	9.06	14.26	9.65	20.46	12.86	10.3	15.76	12.39	7.03	12.06	9.71
Merged-chr17-43266000-2	chr17	43265889	43266089	+	818.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-4358.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	8.08	5.79	7.99	6.84	8.59	11.6	7.31	8.38	15.14	10.54	15.58	1.88
Merged-chr17-40882228-2	chr17	40882133	40882333	+	818.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1675.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	8.88	7.29	1.14	9.25	0.0	0.31	1.33	0.9	15.54	14.56	25.63	16.6
Merged-chr7-67524268-2	chr7	67524161	67524361	+	818.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	120975.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	7.27	12.83	19.97	19.71	7.77	12.54	10.3	9.28	5.51	4.02	4.02	7.83
Merged-chr11-110379794-3	chr11	110379701	110379901	+	818.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19301.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	15.75	6.79	8.56	5.63	7.36	6.27	6.64	8.97	14.55	13.05	10.55	6.89
Merged-chr6-87542826-3	chr6	87542734	87542934	+	818.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-9575.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.46	5.79	11.41	10.46	4.91	3.14	8.3	14.44	7.28	6.53	14.57	9.4
Merged-chr7-16928485-3	chr7	16928402	16928602	+	818.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4470.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	6.06	10.56	11.98	11.26	9.0	9.09	4.32	4.57	20.26	16.57	26.13	15.98
Merged-chr5-115011765-5	chr5	115011703	115011903	+	818.886658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	CpG	279.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	16.15	12.32	6.85	9.65	18.0	10.66	11.96	11.8	11.6	8.03	14.57	9.4
Merged-chr15-101198379-2	chr15	101198276	101198476	+	818.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	4507.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	5.25	4.28	11.41	1.21	9.41	13.8	8.64	6.76	22.23	19.08	16.08	7.83
Merged-chr16-72980024-2	chr16	72979923	72980123	+	818.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019413, intron 15 of 28)	intron (NM_019413, intron 15 of 28)	316874.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	2.42	6.04	2.28	9.65	3.68	6.9	6.98	11.36	19.87	9.04	13.57	4.39
Merged-chr2-52965229-1	chr2	52965129	52965329	+	818.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	107361.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.27	3.52	17.68	6.84	9.41	10.03	7.64	8.55	8.06	3.01	11.05	5.95
Merged-chr4-109418341-3	chr4	109418262	109418462	+	818.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	2715.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	11.71	7.8	17.68	10.86	17.18	11.92	17.27	18.76	12.59	9.04	6.53	10.96
Merged-chr13-47225539-3	chr13	47225414	47225614	+	818.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	31511.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.21	8.8	16.54	4.42	7.77	11.92	6.64	9.5	12.78	3.51	4.52	10.65
Merged-chr1-77761598-1	chr1	77761498	77761698	+	818.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-246510.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.81	0.0	0.0	0.0	0.0	0.63	0.0	1.57	23.41	11.55	34.17	8.46
Merged-chr1-55363514-3	chr1	55363471	55363671	+	818.79364	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029267)	promoter-TSS (NM_029267)	-102.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	6.46	5.53	11.41	6.84	6.55	8.15	7.97	6.28	7.28	10.54	10.05	5.01
Merged-chr5-115336961-2	chr5	115336851	115337051	+	818.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029645, intron 1 of 2)	intron (NM_029645, intron 1 of 2)	4210.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	4.04	4.28	7.99	17.7	8.18	7.21	6.98	7.07	15.93	7.03	16.08	11.28
Merged-chr13-56647737-1	chr13	56647637	56647837	+	818.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38151.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.44	2.01	2.85	5.63	5.32	9.09	7.97	9.06	4.72	5.02	9.55	0.94
Merged-chr19-5018935-3	chr19	5018836	5019036	+	818.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5070.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	13.73	10.56	12.55	6.03	20.86	15.99	8.64	7.29	17.51	16.57	11.56	10.34
Merged-chr6-17281745-3	chr6	17281617	17281817	+	818.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016900, intron 1 of 2)	intron (NM_016900, intron 1 of 2)	532.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	8.08	7.04	13.69	8.45	14.73	10.98	9.63	12.45	11.6	10.04	8.04	12.84
Merged-chr9-64072130-3	chr9	64072032	64072232	+	818.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8629.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	11.31	7.04	11.41	22.52	16.77	24.15	10.63	20.33	10.42	20.59	23.11	6.89
Merged-chr3-28013634-1	chr3	28013534	28013734	+	818.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	29463.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	1.21	5.03	7.42	7.24	12.68	9.09	9.3	11.92	5.51	6.03	11.05	3.76
Merged-chr17-10985527-1	chr17	10985427	10985627	+	818.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	145168.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	2.02	4.02	5.7	6.84	9.82	6.59	3.32	9.31	2.95	2.51	2.51	4.39
Merged-chr1-36437364-1	chr1	36437264	36437464	+	818.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310517, intron 4 of 8)	intron (NM_001310517, intron 4 of 8)	7907.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	3.23	2.52	5.7	12.07	6.14	4.39	3.32	12.06	7.28	4.52	12.56	6.58
Merged-chr12-69485857-3	chr12	69485757	69485957	+	818.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10307.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.06	6.29	3.99	9.25	14.32	9.72	9.63	6.42	19.47	14.56	19.09	10.96
Merged-chr1-181245196-3	chr1	181245097	181245297	+	818.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33219.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	11.71	12.07	13.12	0.8	5.32	19.44	4.98	5.97	16.92	31.13	13.57	4.07
Merged-chr10-88715895-2	chr10	88715795	88715995	+	818.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15206.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	2.42	2.01	3.42	5.63	9.82	8.47	1.99	9.36	12.19	5.02	23.11	6.27
Merged-chr16-49906373-2	chr16	49906271	49906471	+	818.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	-49459.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	2.83	3.52	6.85	12.07	11.86	15.05	17.27	7.35	10.23	9.54	7.54	9.4
Merged-chr12-116595932-2	chr12	116595832	116596032	+	818.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	MTD-int|LTR|ERVL-MaLR	110212.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.0	2.77	3.99	8.45	0.82	2.51	3.32	2.97	16.13	14.06	24.62	10.96
Merged-chr17-29488707-2	chr17	29488606	29488806	+	818.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2339.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.48	10.06	11.41	13.67	9.82	20.38	9.63	9.36	8.46	10.04	13.57	5.95
Merged-chr2-84716212-2	chr2	84716148	84716348	+	818.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1084.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	8.88	10.06	3.99	8.45	6.14	15.68	6.31	5.92	11.01	10.54	10.05	10.65
Merged-chr12-80320102-3	chr12	80320003	80320203	+	818.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59722.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	14.94	7.04	15.97	10.46	7.77	7.84	9.97	15.7	15.54	8.03	15.58	15.66
Merged-chr3-96501012-3	chr3	96500904	96501104	+	818.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24181.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	7.67	12.58	13.12	8.85	8.18	7.21	4.32	4.68	16.72	14.56	16.08	15.35
Merged-chr4-101223297-3	chr4	101223200	101223400	+	818.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	41982.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	17.36	13.33	18.25	4.42	8.59	11.29	9.3	7.96	14.95	19.08	12.56	4.39
Merged-chr10-79853608-3	chr10	79853457	79853657	+	818.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	-875.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	10.09	8.8	5.7	10.46	9.0	5.33	5.65	7.29	6.88	12.55	16.58	16.92
Merged-chr3-87000267-2	chr3	87000170	87000370	+	818.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007639)	promoter-TSS (NM_007639)	-930.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	10.9	7.55	17.11	16.89	6.14	17.87	9.97	24.64	7.28	7.53	15.58	8.14
Merged-chr2-156540766-3	chr2	156540754	156540954	+	818.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-6722.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.63	3.27	10.27	7.64	8.59	8.78	2.99	7.54	8.85	9.04	5.53	7.52
Merged-chr4-134703332-4	chr4	134703262	134703462	+	818.508362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207237, exon 1 of 12)	exon (NM_207237, exon 1 of 12)	928.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	10.5	16.35	5.13	12.07	5.73	14.74	7.97	11.47	12.0	9.54	13.57	12.22
Merged-chr11-97413037-1	chr11	97412937	97413137	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37123.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	12.92	6.79	3.42	5.63	12.27	6.59	0.66	13.23	4.52	3.51	6.53	6.27
Merged-chr18-6244738-2	chr18	6244642	6244842	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-3218.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	4.04	10.06	2.28	8.85	14.32	14.74	2.99	5.72	9.44	7.03	7.54	6.27
Merged-chr4-134677027-2	chr4	134676924	134677124	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	27266.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	7.67	11.57	18.25	26.14	5.32	5.02	6.98	5.05	4.13	6.03	3.01	2.82
Merged-chr6-137702853-2	chr6	137702806	137703006	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32176.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	25.04	20.12	18.83	34.19	0.0	3.14	0.66	1.99	3.15	1.0	0.5	0.0
Merged-chr4-106387027-2	chr4	106386933	106387133	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183225, intron 32 of 67)	L2a|LINE|L2	70820.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	8.48	8.55	12.55	11.66	19.64	18.5	19.27	26.33	6.69	5.52	12.06	3.13
Merged-chr11-80072510-2	chr11	80072411	80072611	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	8480.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	11.31	12.58	6.28	4.02	10.64	15.37	1.99	7.04	12.39	7.03	7.03	7.21
Merged-chr17-12029617-2	chr17	12029528	12029728	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-89656.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	28.27	20.63	23.39	17.7	1.23	4.39	5.98	4.88	8.85	7.53	5.53	5.64
Merged-chr16-23136746-2	chr16	23136654	23136854	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9024.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	1.21	5.79	3.99	4.83	21.68	10.03	13.29	11.83	11.21	18.58	20.6	9.71
Merged-chr10-10411236-2	chr10	10411134	10411334	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 12 of 36)	intron (NM_001127353, intron 12 of 36)	61080.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.23	2.52	0.57	1.21	8.18	2.82	7.64	6.79	25.18	22.09	18.59	10.02
Merged-chr13-107886891-2	chr13	107886795	107886995	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	3169.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	7.67	9.31	9.7	5.63	6.14	2.51	3.99	10.43	22.23	6.03	14.57	5.64
Merged-chr11-9602342-2	chr11	9602241	9602441	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 55 of 61)	RMER15|LTR|ERVL	410399.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.86	6.04	10.27	6.03	5.32	6.59	7.64	9.53	9.64	2.01	18.09	8.77
Merged-chr2-35308327-1	chr2	35308227	35308427	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_146120)	TTS (NM_146120)	25947.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.04	1.01	7.42	6.84	4.91	7.21	6.31	16.15	5.9	1.51	10.05	4.7
Merged-chr5-96998339-3	chr5	96998249	96998449	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	660.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	12.52	7.04	9.7	8.85	8.59	13.48	15.94	9.79	14.16	28.12	23.11	19.42
Merged-chr19-57355611-3	chr19	57355505	57355705	+	818.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5294.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	10.5	8.55	13.69	14.08	16.36	11.6	13.29	10.96	7.87	15.06	17.59	4.7
Merged-chr7-44401881-3	chr7	44401793	44401993	+	818.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	17767.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	5.65	12.83	21.11	12.47	10.64	4.39	3.99	7.82	11.8	4.52	14.07	8.77
Merged-chr2-133480654-3	chr2	133480552	133480752	+	818.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71507.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	11.31	10.31	13.12	11.66	12.27	7.53	21.26	30.28	16.52	10.54	21.1	5.95
Merged-chr2-170158198-3	chr2	170158101	170158301	+	818.404785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15526.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.85	8.05	6.28	3.22	5.73	17.56	16.61	7.57	14.36	17.57	18.59	8.77
Merged-chr4-129130317-3	chr4	129130227	129130427	+	818.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6672.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	16.96	15.59	6.28	5.63	9.41	13.8	7.64	3.93	16.33	12.55	18.09	9.71
Merged-chr7-12422502-2	chr7	12422390	12422590	+	818.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	1.0	NM_001033820	619331.0	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	6.46	4.53	5.13	8.45	6.55	5.02	9.3	12.22	10.62	8.03	10.55	9.71
Merged-chr11-116581036-3	chr11	116580964	116581164	+	818.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173755, exon 1 of 18)	exon (NM_173755, exon 1 of 18)	383.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	10.5	11.82	11.41	6.03	7.36	6.27	8.97	8.86	12.59	3.51	10.55	9.71
Merged-chr16-94328221-4	chr16	94328203	94328403	+	818.354187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133229)	promoter-TSS (NM_133229)	-119.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	9.29	11.57	8.56	12.07	19.23	10.03	7.64	13.63	12.98	12.55	9.55	10.02
Merged-chr9-69109788-2	chr9	69109676	69109876	+	818.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-180065.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	10.5	7.8	4.56	10.05	2.05	3.76	10.63	12.39	1.57	2.51	3.01	2.51
Merged-chr12-16580211-2	chr12	16580109	16580309	+	818.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355598, intron 2 of 20)	MLT1G1|LTR|ERVL-MaLR	9561.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	12.52	9.81	1.71	9.25	15.14	9.41	10.3	11.66	4.72	0.0	3.01	0.94
Merged-chr12-36381020-3	chr12	36380917	36381117	+	818.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289502)	promoter-TSS (NM_001289502)	-433.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	8.88	9.81	12.55	6.44	4.09	6.27	6.98	7.07	19.47	19.58	14.57	10.65
Merged-chr11-85663635-1	chr11	85663535	85663735	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	56109.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	2.83	0.0	3.42	0.0	2.05	7.21	9.3	8.66	0.98	1.0	3.01	0.0
Merged-chr6-97407527-1	chr6	97407427	97407627	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	51759.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.23	6.54	3.42	1.21	7.36	4.7	10.63	4.74	5.31	5.02	2.51	6.58
Merged-chr14-8161958-1	chr14	8161858	8162058	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360315, intron 18 of 18)	intron (NM_001360315, intron 18 of 18)	11034.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	4.04	5.28	6.85	2.41	4.09	10.98	6.31	7.26	5.9	6.53	8.54	3.45
Merged-chr12-69681373-3	chr12	69681296	69681496	+	818.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135559, intron 1 of 22)	CpG	456.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	10.5	18.61	15.4	17.7	16.77	9.09	4.98	18.25	7.28	7.53	7.54	9.08
Merged-chr18-67486694-1	chr18	67486594	67486794	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	21845.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	5.65	6.79	5.7	6.44	10.23	10.03	5.31	11.69	9.44	4.52	3.01	3.76
Merged-chr4-129812200-3	chr4	129812094	129812294	+	818.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-8285.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	10.09	12.32	8.56	1.61	8.18	30.42	7.31	1.23	18.88	20.08	12.06	3.13
Merged-chr1-138343630-1	chr1	138343530	138343730	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	69892.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	2.42	4.78	6.28	4.83	9.82	13.8	4.32	9.08	6.49	8.54	6.53	8.77
Merged-chr5-123471030-3	chr5	123470913	123471113	+	818.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	11088.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	9.29	8.8	11.41	11.26	9.82	13.17	4.98	12.84	13.96	18.08	17.08	9.08
Merged-chr7-128128964-3	chr7	128128910	128129110	+	818.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-558.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	13.73	9.06	23.96	14.48	8.59	17.56	2.99	10.04	7.08	9.54	16.58	14.72
Merged-chr11-46448102-4	chr11	46447995	46448195	+	818.258301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-6836.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	1.62	2.26	10.27	4.42	4.91	3.45	2.99	2.78	7.67	6.53	9.04	6.58
Merged-chr7-67374143-3	chr7	67374024	67374224	+	818.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1266.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	10.9	6.29	6.85	13.67	17.59	9.72	13.29	14.92	21.05	15.57	12.56	13.16
Merged-chr19-34217150-2	chr19	34217047	34217247	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360719)	promoter-TSS (NM_001360719)	-361.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	12.11	15.34	5.7	16.09	11.05	15.68	9.3	7.99	0.0	1.51	0.0	0.0
Merged-chr3-8984762-1	chr3	8984662	8984862	+	818.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MER5A|DNA|hAT-Charlie	19442.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.63	6.04	7.99	1.61	10.64	6.27	7.64	9.48	4.52	10.04	6.03	7.83
Merged-chr19-12540172-3	chr19	12540063	12540263	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33347.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	13.33	7.55	10.27	9.25	5.32	12.86	6.98	9.34	25.57	15.57	32.66	7.21
Merged-chr16-90334276-1	chr16	90334176	90334376	+	818.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49773.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.25	5.28	5.7	2.82	7.36	10.98	10.63	7.32	8.06	15.57	6.03	4.07
Merged-chr2-116897031-3	chr2	116896913	116897113	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3139.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	10.9	5.53	6.85	19.31	8.18	8.15	6.31	8.33	7.87	20.59	22.61	5.01
Merged-chr6-83488696-3	chr6	83488592	83488792	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 3 of 6)	intron (NR_149734, intron 3 of 6)	18277.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	18.57	11.57	9.13	17.7	13.91	10.35	6.31	15.59	5.11	1.0	15.58	6.89
Merged-chr13-76410845-2	chr13	76410734	76410934	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	25873.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	11.71	3.52	2.28	12.87	6.55	3.76	5.65	7.79	0.0	0.0	3.52	0.94
Merged-chr7-45403745-2	chr7	45403656	45403856	+	818.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2204.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	2.83	6.54	10.27	4.02	4.91	13.48	7.31	7.07	21.64	13.05	12.56	10.96
Merged-chr2-12206460-2	chr2	12206298	12206498	+	818.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 13 of 29)	RLTR9C|LTR|ERVK	-94848.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.02	2.77	1.14	4.42	4.91	4.39	7.64	2.66	6.69	7.03	7.54	3.45
Merged-chr9-25504919-3	chr9	25504825	25505025	+	818.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23328.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.04	10.31	8.56	7.24	10.23	15.05	7.97	13.68	13.37	16.07	19.09	15.04
Merged-chr4-11579249-3	chr4	11579150	11579350	+	818.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-412.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	8.88	13.58	6.85	7.64	20.05	16.31	12.29	20.24	13.77	10.54	18.59	13.47
Merged-chr19-3384591-1	chr19	3384491	3384691	+	818.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013495, exon 19 of 19)	3' UTR (NM_013495, exon 19 of 19)	-4266.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	5.65	4.28	14.26	5.63	9.82	7.21	8.3	12.34	3.54	18.08	11.56	5.01
Merged-chr4-141159629-3	chr4	141159479	141159679	+	818.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	11657.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	2.42	2.52	2.85	0.0	5.73	3.14	0.33	3.53	3.54	2.01	8.04	7.52
Merged-chr8-66492017-1	chr8	66491917	66492117	+	818.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5487.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.85	1.01	5.7	4.83	4.09	10.03	4.65	3.84	17.31	15.57	21.1	7.83
Merged-chr8-13644366-3	chr8	13644250	13644450	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	33237.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	8.48	7.04	1.14	9.25	29.46	15.37	19.93	36.59	9.83	13.05	14.07	5.64
Merged-chr14-16240175-3	chr14	16240065	16240265	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001359883, exon 3 of 3)	3' UTR (NM_001359883, exon 3 of 3)	3166.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	8.88	8.3	18.25	2.82	13.5	12.86	8.97	5.36	16.33	23.6	21.61	13.16
Merged-chr17-56132815-3	chr17	56132662	56132862	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013662, exon 2 of 17)	exon (NM_013662, exon 2 of 17)	1090.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	8.88	9.56	2.85	4.42	6.14	6.59	3.32	4.15	7.28	4.02	2.51	8.14
Merged-chr2-28402334-3	chr2	28402246	28402446	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45595.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	13.33	8.55	10.27	10.86	15.55	13.17	13.62	13.23	6.1	6.03	13.57	10.34
Merged-chr1-64193358-3	chr1	64193252	64193452	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71963.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.08	9.06	9.7	5.63	12.68	6.59	7.64	9.73	25.37	7.53	20.1	8.46
Merged-chr6-86490129-3	chr6	86490028	86490228	+	818.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1901.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	8.08	10.06	22.82	7.24	17.18	21.01	6.31	12.14	19.87	19.58	15.58	8.46
Merged-chr7-75704614-3	chr7	75704512	75704712	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-143726.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	11.71	8.55	10.27	11.26	17.59	11.6	12.29	18.81	15.93	14.56	20.6	9.08
Merged-chr4-126554663-3	chr4	126554584	126554784	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2296.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	16.96	12.58	17.68	8.04	9.82	10.66	5.65	12.17	17.9	19.08	17.08	9.4
Merged-chr2-35298128-3	chr2	35298059	35298259	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206368, intron 9 of 16)	intron (NM_001206368, intron 9 of 16)	15779.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	10.09	7.29	10.84	5.23	7.36	9.72	2.66	8.78	10.23	3.01	15.58	11.28
Merged-chr5-115007192-3	chr5	115007095	115007295	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4329.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	14.13	10.56	9.7	2.41	6.14	5.96	9.97	8.86	10.23	9.54	13.57	9.71
Merged-chr1-135685170-3	chr1	135685070	135685270	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34893.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	16.15	12.32	5.13	3.22	12.68	11.29	8.97	7.26	9.44	10.04	6.03	4.7
Merged-chr1-74396659-2	chr1	74396553	74396753	+	818.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153088, exon 7 of 7)	3' UTR (NM_153088, exon 7 of 7)	2343.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	7.67	9.06	11.41	8.85	9.41	13.17	7.97	6.87	13.57	15.06	20.6	7.52
Merged-chr10-127586396-2	chr10	127586302	127586502	+	818.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34746.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	14.54	10.31	7.42	14.08	15.96	10.03	7.97	13.68	4.52	6.03	9.55	5.64
Merged-chr7-101616675-3	chr7	101616580	101616780	+	818.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-35519.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.65	3.02	6.28	9.65	10.64	9.72	22.92	12.9	25.18	5.02	25.63	3.45
Merged-chr8-117362536-3	chr8	117362443	117362643	+	818.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	13373.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	10.9	9.06	12.55	13.67	7.36	14.74	4.98	27.11	16.33	3.51	14.57	14.72
Merged-chr10-5826000-2	chr10	5825902	5826102	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019958, exon 5 of 5)	3' UTR (NM_019958, exon 5 of 5)	-2059.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	11.71	9.06	3.42	6.44	5.32	9.09	4.65	10.04	5.51	4.52	4.52	5.33
Merged-chr1-77227349-3	chr1	77227243	77227443	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269425.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	12.11	11.82	1.14	2.01	8.59	15.99	18.27	8.58	8.85	4.52	9.04	5.01
Merged-chr1-36374118-1	chr1	36374018	36374218	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001277076, intron 2 of 52)	intron (NM_001277076, intron 2 of 52)	1827.0	NM_001277076	100534273.0	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	4.44	10.31	8.56	12.87	1.23	0.0	0.0	2.64	1.77	0.5	1.0	0.63
Merged-chr14-73402336-3	chr14	73402340	73402540	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-17151.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	2.83	6.79	4.56	5.63	4.91	1.57	2.66	5.02	5.9	5.02	4.02	2.82
Merged-chr7-45567897-1	chr7	45567797	45567997	+	818.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025330)	TTS (NM_025330)	-2256.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	8.88	7.8	4.56	3.62	4.5	5.96	6.98	7.85	9.24	6.03	11.05	5.33
Merged-chr7-4300395-1	chr7	4300295	4300495	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26206.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	6.06	2.01	5.7	9.25	9.41	8.78	6.64	11.78	4.92	5.52	11.05	6.58
Merged-chr9-120926406-1	chr9	120926306	120926506	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	4396.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	3.63	3.52	11.41	2.41	7.77	13.8	4.98	6.98	11.8	6.03	9.55	5.64
Merged-chr12-111505071-1	chr12	111504971	111505171	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19248.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	11.71	15.59	12.55	12.47	0.82	3.14	1.33	3.08	5.9	4.52	4.52	3.13
Merged-chr18-46467790-1	chr18	46467690	46467890	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1974.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.02	4.28	2.28	3.22	8.59	1.25	4.65	9.62	3.34	6.53	10.05	3.76
Merged-chr5-139393021-1	chr5	139392921	139393121	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001362206, exon 2 of 2)	exon (NM_001362206, exon 2 of 2)	3117.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	2.42	1.01	5.13	1.61	8.59	4.7	4.65	9.62	3.74	4.02	5.53	4.39
Merged-chr13-94382687-3	chr13	94382594	94382794	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23734.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	6.86	4.53	15.97	11.66	4.5	5.33	12.29	7.15	11.41	5.52	3.01	9.08
Merged-chrX-159778998-1	chrX	159778898	159779098	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 2 of 16)	MTD|LTR|ERVL-MaLR	-61470.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.81	1.26	0.0	2.01	6.95	9.09	10.63	8.47	4.33	6.53	2.01	3.13
Merged-chr10-68842427-2	chr10	68842257	68842457	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118611.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.85	5.03	4.56	1.21	1.23	4.7	3.32	4.29	3.74	3.01	10.55	3.76
Merged-chr6-124993097-1	chr6	124992997	124993197	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3623.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.81	4.53	0.0	2.82	7.77	1.25	6.98	5.41	1.18	3.51	0.0	1.88
Merged-chr4-129792604-1	chr4	129792504	129792704	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-27875.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.0	1.76	0.0	2.82	0.0	1.25	6.64	8.64	5.9	3.01	6.03	7.21
Merged-chr12-41484896-1	chr12	41484796	41484996	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1161.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.02	1.26	3.99	8.04	7.77	6.59	7.31	8.92	5.51	12.05	6.53	3.13
Merged-chr5-146807891-1	chr5	146807791	146807991	+	818.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12935.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.63	3.27	0.0	5.63	4.91	1.88	3.32	3.7	21.83	22.59	20.1	7.83
Merged-chr16-51985661-2	chr16	51985572	51985772	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153657, exon 2 of 5)	non-coding (NR_153657, exon 2 of 5)	1615.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	1.62	4.28	1.71	2.01	8.18	2.82	12.95	11.83	12.0	17.07	13.57	4.39
Merged-chr6-72099453-1	chr6	72099353	72099553	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1845.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	3.23	0.0	10.27	4.42	2.86	0.0	8.64	7.4	2.16	1.0	2.51	6.89
Merged-chr18-84085277-1	chr18	84085177	84085377	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081300, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	1285.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.44	4.28	3.42	5.63	3.68	3.76	7.64	9.11	7.67	2.01	5.02	5.95
Merged-chr5-21331848-1	chr5	21331748	21331948	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 3 of 18)	L2a|LINE|L2	-40825.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.04	2.01	2.85	7.64	10.23	1.88	5.65	12.17	15.34	1.51	10.05	3.45
Merged-chr7-120934818-1	chr7	120934718	120934918	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025298, exon 13 of 21)	exon (NM_025298, exon 13 of 21)	17074.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	3.23	3.27	1.71	3.62	2.86	7.84	5.65	10.18	9.44	6.53	8.04	4.39
Merged-chr2-157425900-1	chr2	157425800	157426000	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1607.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.86	3.52	6.85	2.41	3.68	3.76	6.64	7.07	2.36	2.01	5.53	0.0
Merged-chr11-77784428-1	chr11	77784328	77784528	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	7193.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	7.67	0.25	9.13	3.62	10.23	6.9	4.65	8.97	6.1	6.03	6.53	6.27
Merged-chr17-10358982-1	chr17	10358882	10359082	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34380.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.44	3.27	4.56	10.46	1.64	8.78	2.33	7.4	7.67	7.53	8.04	9.4
Merged-chr3-148963263-1	chr3	148963163	148963363	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.44	1.01	7.99	2.01	6.95	2.2	6.98	8.47	2.75	1.0	1.0	2.19
Merged-chr8-61449003-1	chr8	61448903	61449103	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-38731.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	3.63	0.0	1.14	0.0	11.45	7.21	8.64	7.46	5.11	7.53	4.52	4.39
Merged-chr6-16977563-1	chr6	16977463	16977663	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79122.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.85	4.02	1.14	2.41	4.91	8.15	2.66	5.8	4.72	1.0	16.58	3.13
Merged-chr1-139035428-1	chr1	139035328	139035528	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166501, intron 3 of 21)	MTD|LTR|ERVL-MaLR	57771.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	7.67	6.29	0.0	10.05	8.59	3.14	1.33	8.05	3.34	3.51	5.02	4.7
Merged-chr5-92344199-1	chr5	92344099	92344299	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	MLTR11B|LTR|ERVK	4690.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	10.09	10.56	2.28	1.61	0.82	10.66	0.66	0.45	5.51	5.52	0.0	0.0
Merged-chr8-78630639-1	chr8	78630539	78630739	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	121311.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	2.42	5.28	6.85	6.03	6.95	1.57	6.31	8.92	5.51	5.02	10.05	4.7
Merged-chr9-83577056-1	chr9	83576956	83577156	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	28718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.63	0.25	0.0	1.61	1.64	0.94	7.31	1.74	0.2	1.0	1.0	0.63
Merged-chr12-40245696-3	chr12	40245598	40245798	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22334.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	8.48	13.58	18.25	7.24	17.59	17.56	12.29	10.6	11.6	11.55	36.18	7.21
Merged-chr17-74527363-3	chr17	74527275	74527475	+	817.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-920.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	8.88	10.31	7.42	6.44	14.73	4.08	5.31	8.02	25.37	11.05	17.59	7.21
Merged-chr16-44136711-4	chr16	44136592	44136792	+	817.94165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	2567.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.86	8.3	10.27	3.22	7.77	9.09	3.65	13.15	12.39	27.62	10.55	15.98
Merged-chr4-142082893-3	chr4	142082798	142082998	+	817.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1400.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	13.73	9.06	13.12	10.05	18.0	11.6	7.31	15.76	23.41	11.05	16.08	13.47
Merged-chr5-138831959-2	chr5	138831863	138832063	+	817.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	11883.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	8.08	8.8	5.7	6.44	13.5	13.8	14.95	6.22	8.85	13.05	13.57	15.04
Merged-chr5-151142415-2	chr5	151142320	151142520	+	817.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	47773.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	7.27	4.28	4.56	5.23	9.41	18.19	1.99	8.58	22.42	11.55	18.59	7.52
Merged-chrX-160114911-3	chrX	160114824	160115024	+	817.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163085, intron 19 of 28)	MLT1H|LTR|ERVL-MaLR	23506.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	5.65	5.79	17.68	10.46	8.59	10.35	7.97	17.36	18.69	5.52	9.55	9.4
Merged-chr11-114676642-3	chr11	114676577	114676777	+	817.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1209.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	5.65	8.8	5.13	5.63	3.68	2.51	6.98	6.9	10.82	6.53	10.05	8.14
Merged-chr3-26991199-3	chr3	26991101	26991301	+	817.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162653.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	10.5	6.79	10.84	13.27	9.82	20.38	28.23	32.24	30.88	17.07	44.22	22.24
Merged-chr16-11709554-3	chr16	11709458	11709658	+	817.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70144.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	7.67	9.31	10.27	11.26	10.23	2.82	3.99	16.21	14.36	9.04	15.07	10.02
Merged-chr17-29114083-2	chr17	29113979	29114179	+	817.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20310.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	4.85	8.8	10.27	10.05	35.18	51.43	17.94	24.73	3.54	5.52	3.52	1.25
Merged-chr18-55624333-2	chr18	55624238	55624438	+	817.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-631747.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.85	10.56	9.13	10.46	11.45	11.92	12.29	17.97	5.7	8.03	13.57	5.33
Merged-chr7-3289240-3	chr7	3289116	3289316	+	817.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	178.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	17.36	11.07	9.7	15.28	6.14	6.59	8.64	7.21	13.37	9.54	13.06	14.1
Merged-chr8-26896080-2	chr8	26895981	26896181	+	817.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71658.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	8.88	3.77	12.55	14.08	20.46	14.42	8.64	11.64	7.08	2.51	12.06	5.33
Merged-chr8-85699243-3	chr8	85699133	85699333	+	817.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357288, intron 1 of 8)	intron (NM_001357288, intron 1 of 8)	-1672.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	12.52	7.8	13.69	8.85	12.27	15.37	3.65	9.17	15.34	6.53	9.04	15.66
Merged-chr5-3360106-3	chr5	3359996	3360196	+	817.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	16203.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	10.9	11.07	12.55	20.91	11.05	15.68	9.97	9.28	14.95	12.55	26.63	9.4
Merged-chr2-75638344-3	chr2	75638246	75638446	+	817.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-20913.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	30.69	7.04	21.68	14.48	21.68	21.32	13.95	8.5	55.27	40.17	35.17	31.95
Merged-chr10-112000643-2	chr10	112000527	112000727	+	817.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-3363.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.46	5.03	1.14	2.82	8.18	15.99	13.95	2.07	14.95	9.54	6.03	4.7
Merged-chr4-120104799-1	chr4	120104699	120104899	+	817.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-56407.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.65	3.02	2.28	0.8	9.41	10.03	5.31	15.0	0.79	7.03	3.01	6.58
Merged-chr15-9747924-2	chr15	9747749	9747949	+	817.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	1019.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.4	2.26	1.14	6.03	3.27	1.57	2.99	3.45	2.95	4.52	1.51	5.01
Merged-chr3-50381756-1	chr3	50381656	50381856	+	817.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011990, intron 8 of 11)	intron (NM_011990, intron 8 of 11)	61857.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.44	3.02	7.42	8.04	9.82	5.96	6.31	11.94	4.52	3.01	6.03	1.88
Merged-chr15-57988021-3	chr15	57987909	57988109	+	817.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173862, intron 1 of 3)	intron (NM_173862, intron 1 of 3)	2106.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	8.48	8.55	1.71	0.8	20.05	23.83	4.65	8.44	14.36	25.61	16.58	8.77
Merged-chr12-118775560-3	chr12	118775420	118775620	+	817.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70809.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	16.96	7.55	9.13	20.91	11.05	12.54	9.97	11.92	8.46	8.54	3.01	4.7
Merged-chr1-37315198-3	chr1	37315092	37315292	+	817.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	15354.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	23.82	8.3	19.4	8.45	8.59	14.11	9.97	24.39	13.37	10.54	12.06	11.28
Merged-chr1-36473454-3	chr1	36473372	36473572	+	817.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	1875.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	12.92	14.84	7.42	10.46	6.55	13.17	9.63	11.3	16.13	12.05	19.6	9.4
Merged-chr2-30717417-3	chr2	30717312	30717512	+	817.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER115|DNA|hAT-Tip100	-3798.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	14.94	14.84	13.12	14.48	24.96	20.38	15.61	24.93	14.95	10.54	7.54	6.89
Merged-chr9-118703350-1	chr9	118703250	118703450	+	817.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8342.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.62	2.01	1.14	0.8	0.0	2.2	2.66	2.05	6.69	15.06	21.1	7.52
Merged-chr16-11439654-3	chr16	11439532	11439732	+	817.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	33984.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	10.09	4.28	11.98	9.25	3.27	7.53	8.3	22.26	17.51	14.06	17.59	14.41
Merged-chr12-25189288-1	chr12	25189188	25189388	+	817.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60114.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.44	3.02	2.28	10.05	9.41	8.15	5.31	9.87	6.88	9.04	4.52	8.77
Merged-chr9-114797729-3	chr9	114797638	114797838	+	817.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-15745.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.23	9.31	7.99	10.46	5.32	17.56	5.98	9.84	19.28	9.04	18.59	8.46
Merged-chr8-105375284-1	chr8	105375184	105375384	+	817.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-97.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.81	6.04	6.28	3.22	7.77	2.82	3.65	2.52	11.6	15.06	8.54	12.22
Merged-chr1-33907104-2	chr1	33907002	33907202	+	817.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	CpG	519.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	12.52	16.35	13.12	18.5	4.91	10.03	3.99	6.53	9.24	3.51	7.03	4.39
Merged-chr6-137414746-2	chr6	137414654	137414854	+	817.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 14 of 26)	B3|SINE|B2	4033.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.85	5.28	0.57	2.41	6.14	14.11	8.64	6.64	14.55	15.06	18.59	8.77
Merged-chr17-27203769-2	chr17	27203594	27203794	+	817.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146075, exon 1 of 9)	exon (NM_146075, exon 1 of 9)	744.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	5.65	7.04	2.28	0.0	9.82	5.96	6.98	6.42	6.88	11.05	5.02	6.27
Merged-chr10-67386253-3	chr10	67386167	67386367	+	817.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100986.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	21.0	11.07	23.96	16.49	10.23	13.17	9.3	12.93	10.03	15.06	21.1	7.52
Merged-chr9-95603074-3	chr9	95602977	95603177	+	817.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34551.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	16.56	5.53	4.56	11.26	6.95	13.48	4.65	8.55	19.67	6.03	15.58	10.65
Merged-chr10-93370498-2	chr10	93370411	93370611	+	817.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34300.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	8.88	8.55	5.7	4.42	13.09	10.66	9.3	13.96	7.67	13.05	15.07	5.01
Merged-chr4-12546671-2	chr4	12546574	12546774	+	817.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-360163.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	8.08	11.07	0.57	7.24	9.82	11.6	9.63	8.78	3.15	7.03	11.56	2.51
Merged-chr11-118449308-2	chr11	118449201	118449401	+	817.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	5694.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	7.27	2.01	0.57	4.42	13.91	9.41	10.63	8.47	16.13	10.54	15.58	7.83
Merged-chr11-51818441-3	chr11	51818347	51818547	+	817.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39034.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	10.5	14.34	21.11	8.45	10.64	7.21	11.63	15.73	8.65	12.05	15.07	9.4
Merged-chr8-10683303-3	chr8	10683203	10683403	+	817.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	199151.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	8.08	5.28	10.84	30.16	20.46	24.15	20.59	34.68	16.33	13.05	21.1	10.65
Merged-chr4-133650209-3	chr4	133650107	133650307	+	817.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-16778.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	7.27	9.06	5.7	10.46	10.64	11.92	6.31	10.46	22.62	17.57	23.11	11.59
Merged-chr3-105078200-2	chr3	105078117	105078317	+	817.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029228, intron 4 of 4)	intron (NM_029228, intron 4 of 4)	11373.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	10.5	23.64	16.54	24.13	3.68	0.0	2.66	4.79	2.36	1.51	4.02	0.94
Merged-chr10-115316023-2	chr10	115315913	115316113	+	817.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-422.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	15.75	13.83	5.7	8.85	19.64	27.59	31.89	23.66	23.6	14.56	27.64	27.88
Merged-chr9-14998788-1	chr9	14998688	14998888	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46690.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	4.44	1.51	4.56	5.23	8.18	7.53	12.29	23.02	3.93	2.01	8.04	4.7
Merged-chrX-169973026-2	chrX	169972927	169973127	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 3 of 9)	intron (NM_010797, intron 3 of 9)	5890.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	2.42	2.26	4.56	3.22	7.77	8.15	6.98	7.49	57.04	37.16	35.68	21.3
Merged-chr6-38736474-2	chr6	38736367	38736567	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	73398.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	8.08	16.35	1.71	6.03	13.5	6.9	11.29	8.86	12.39	1.51	22.61	10.34
Merged-chr11-77519223-1	chr11	77519123	77519323	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	4106.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	6.06	6.54	1.71	2.41	7.36	8.15	3.32	9.42	5.9	2.51	5.02	5.33
Merged-chr13-9738315-1	chr13	9738215	9738415	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	25495.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	11.31	8.05	2.28	10.05	8.18	9.41	2.99	10.65	6.69	3.01	12.56	2.82
Merged-chr19-28657292-1	chr19	28657192	28657392	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-20932.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	8.08	3.77	7.42	3.22	6.55	9.41	6.64	10.37	2.75	5.02	5.02	1.88
Merged-chr13-51161804-1	chr13	51161704	51161904	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9221.0	NM_029173	75124.0	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	13.33	4.28	8.56	2.01	2.45	8.47	5.65	8.33	8.85	5.02	3.52	4.07
Merged-chr19-9938349-1	chr19	9938249	9938449	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-38816.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	1.62	3.27	3.99	4.83	7.36	10.03	3.32	6.11	6.29	4.02	1.51	1.88
Merged-chr8-119876817-3	chr8	119876693	119876893	+	817.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146219, exon 5 of 5)	exon (NM_146219, exon 5 of 5)	14488.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	8.08	4.53	15.97	10.46	6.14	9.41	9.97	14.07	13.57	6.53	20.1	10.34
Merged-chr2-122407824-3	chr2	122407728	122407928	+	817.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-32992.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	12.92	3.52	20.54	8.45	17.18	23.52	9.97	20.52	16.52	5.52	11.56	8.77
Merged-chr16-33912172-3	chr16	33912084	33912284	+	817.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54854.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.67	6.79	10.27	8.45	6.95	18.19	7.64	13.93	20.06	7.53	10.55	11.9
Merged-chr10-127578169-3	chr10	127578073	127578273	+	817.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008512, exon 22 of 89)	exon (NM_008512, exon 22 of 89)	42975.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.08	6.79	12.55	6.03	9.41	9.09	20.59	26.16	17.7	22.59	20.6	28.82
Merged-chr9-3027726-3	chr9	3027564	3027764	+	817.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	11079.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.86	8.05	5.13	9.25	15.55	5.64	25.58	23.19	10.23	10.04	7.54	13.47
Merged-chr9-40229035-3	chr9	40228934	40229134	+	817.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36718.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	6.46	9.56	8.56	16.89	8.18	8.47	7.97	10.37	15.14	13.56	14.57	10.65
Merged-chr6-115334690-2	chr6	115334587	115334787	+	817.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA7|LINE|L1	-26264.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	11.31	4.53	11.41	15.69	11.45	21.95	31.22	27.56	7.08	3.51	15.58	5.33
Merged-chr10-37386405-3	chr10	37386279	37386479	+	817.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247453.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.02	3.02	8.56	10.05	10.23	7.21	5.98	9.11	13.57	6.53	14.07	7.21
Merged-chr10-122038760-1	chr10	122038660	122038860	+	817.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	8555.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	2.83	3.02	0.0	5.23	6.14	4.08	5.65	3.59	12.59	18.58	19.6	9.08
Merged-chr4-101685346-3	chr4	101685261	101685461	+	817.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32046.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	7.27	8.05	15.4	8.45	18.0	17.25	9.97	8.55	35.99	41.67	49.24	22.24
Merged-chr8-126802800-2	chr8	126802751	126802951	+	817.383301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46169.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	16.15	7.29	3.99	4.02	8.18	12.23	5.31	7.15	10.23	15.57	6.53	6.89
Merged-chr4-103120564-2	chr4	103120484	103120684	+	817.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1194.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	8.08	1.51	3.42	5.23	13.09	9.41	5.65	11.07	11.41	8.03	14.57	10.34
Merged-chr19-16209780-2	chr19	16209676	16209876	+	817.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	45678.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	12.92	7.55	14.83	11.26	16.36	13.48	8.97	13.29	20.85	7.03	12.56	1.88
Merged-chr7-25731543-2	chr7	25731451	25731651	+	817.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144922, intron 10 of 14)	intron (NM_144922, intron 10 of 14)	-12498.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	6.86	6.79	5.7	14.48	12.27	12.86	11.63	19.88	8.26	4.52	9.04	5.01
Merged-chr14-120293230-1	chr14	120293130	120293330	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-13222.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	5.65	3.77	3.99	2.82	2.86	6.9	7.97	12.45	3.54	7.53	2.51	3.45
Merged-chr1-164075447-1	chr1	164075347	164075547	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	13371.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	2.83	5.28	15.97	2.82	9.0	3.76	8.3	8.41	7.47	5.02	4.52	3.13
Merged-chr9-65693153-1	chr9	65693053	65693253	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172536, exon 10 of 10)	3' UTR (NM_172536, exon 10 of 10)	16605.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	2.42	7.29	12.55	1.61	12.27	5.33	3.99	8.05	4.72	8.54	6.03	4.07
Merged-chr6-73710998-3	chr6	73710898	73711098	+	817.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-239977.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	5.65	6.29	12.55	10.46	33.96	22.26	24.58	35.55	10.03	6.53	11.56	5.33
Merged-chr4-106980712-1	chr4	106980612	106980812	+	817.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	57527.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.65	4.02	4.56	8.04	0.82	3.76	1.33	4.01	10.62	8.54	19.6	8.46
Merged-chr7-63753525-2	chr7	63753424	63753624	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-163333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.04	4.02	6.85	6.44	11.05	8.15	1.0	7.71	11.21	14.06	7.54	9.4
Merged-chr13-113756480-1	chr13	113756380	113756580	+	817.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38028.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	14.94	8.8	15.97	22.52	0.82	2.2	0.0	4.29	3.74	4.02	0.0	0.63
Merged-chr8-14523252-1	chr8	14523152	14523352	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 3 of 15)	L1_Mur2|LINE|L1	-365284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	1.62	0.0	4.56	3.22	2.45	15.05	9.3	5.5	10.23	6.53	1.0	4.07
Merged-chr11-119863087-2	chr11	119862998	119863198	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-19191.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	6.46	8.55	10.27	2.01	12.27	6.27	6.31	9.62	23.8	13.56	19.09	8.46
Merged-chr8-120540244-3	chr8	120540122	120540322	+	817.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	1526.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	10.5	5.03	4.56	8.85	10.64	9.09	13.29	11.36	14.36	6.03	15.58	7.21
Merged-chr3-132029284-3	chr3	132029188	132029388	+	817.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56004.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	15.34	14.84	10.84	20.51	7.36	14.11	6.98	16.49	13.18	8.54	13.06	10.02
Merged-chr2-142698529-5	chr2	142698418	142698618	+	817.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202946.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	7.27	5.28	10.84	9.25	7.36	4.08	5.31	4.4	9.44	6.53	12.06	8.14
Merged-chr4-41737762-3	chr4	41737644	41737844	+	817.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286551)	TTS (NM_001286551)	3615.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	9.69	6.79	15.4	4.83	22.09	17.56	8.64	14.72	20.06	9.54	15.58	10.65
Merged-chr7-58837019-2	chr7	58836908	58837108	+	817.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178806.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.63	4.53	6.85	5.23	8.59	5.96	11.96	8.19	17.31	8.54	17.59	12.22
Merged-chr8-69023533-3	chr8	69023433	69023633	+	817.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-65203.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.65	10.82	17.68	1.61	10.64	13.48	8.64	4.46	17.7	18.58	14.57	20.68
Merged-chr11-105567449-2	chr11	105567361	105567561	+	817.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22525.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.63	5.53	6.85	6.44	5.32	8.47	6.98	15.17	2.95	16.07	19.6	7.52
Merged-chr19-34402920-2	chr19	34402819	34403019	+	817.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72216.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	1.62	9.56	11.41	8.45	3.68	12.86	4.65	20.24	6.29	2.01	6.03	3.13
Merged-chr5-24118429-2	chr5	24118329	24118529	+	817.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161800, intron 1 of 9)	intron (NM_001161800, intron 1 of 9)	17839.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	13.33	12.32	22.82	15.28	0.0	0.0	0.0	0.0	11.21	5.52	25.12	7.83
Merged-chr13-46907260-2	chr13	46907145	46907345	+	817.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22473.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.0	3.27	2.28	3.62	4.09	5.33	3.32	6.7	21.64	26.61	22.11	11.9
Merged-chr1-176223453-3	chr1	176223357	176223557	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-9515.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	8.08	17.36	9.13	17.7	21.68	21.64	8.97	14.05	12.78	16.57	18.59	8.14
Merged-chr11-61499322-3	chr11	61499232	61499432	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5066.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	6.86	4.28	12.55	10.05	13.09	11.92	10.63	10.93	16.92	11.05	17.59	9.08
Merged-chr8-79030399-4	chr8	79030414	79030614	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	CpG	2077.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	6.46	2.77	4.56	10.05	6.55	7.21	12.95	5.72	2.95	7.53	4.02	1.25
Merged-chr15-36325287-3	chr15	36325168	36325368	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-42121.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	10.09	9.56	11.41	5.63	17.18	33.55	9.63	9.64	26.36	12.55	16.08	7.21
Merged-chr2-30084320-3	chr2	30084212	30084412	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153805, intron 9 of 21)	MTD|LTR|ERVL-MaLR	5614.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	9.29	8.05	15.97	18.9	12.68	3.76	5.98	13.85	13.57	16.07	14.07	10.65
Merged-chr11-50107507-3	chr11	50107391	50107591	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23869.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	14.13	7.55	18.83	5.63	8.18	10.03	13.95	17.13	11.21	10.54	6.03	6.89
Merged-chr16-21728060-3	chr16	21727974	21728174	+	817.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33409.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	11.31	7.55	16.54	14.08	17.18	8.78	9.97	9.62	19.08	17.07	10.55	10.65
Merged-chr3-9896553-2	chr3	9896448	9896648	+	817.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-62869.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	12.11	6.29	10.27	17.29	18.82	10.35	18.6	26.78	4.72	2.01	5.53	1.88
Merged-chr5-45876513-2	chr5	45876402	45876602	+	817.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18962.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	6.86	2.01	1.14	5.23	6.95	7.21	12.95	8.86	11.01	7.03	8.04	9.4
Merged-chr1-9631190-3	chr1	9631096	9631296	+	817.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015470)	promoter-TSS (NR_015470)	-104.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	8.88	3.77	6.85	9.65	15.14	15.05	10.63	19.51	24.98	23.6	26.13	15.04
Merged-chr18-24205476-1	chr18	24205376	24205576	+	817.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	132.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	6.86	11.07	3.99	11.26	13.5	8.78	8.97	10.6	10.82	17.57	15.58	5.01
Merged-chr6-72154162-3	chr6	72154041	72154241	+	817.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011375, exon 7 of 7)	3' UTR (NM_011375, exon 7 of 7)	-30944.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	12.11	5.28	13.69	8.04	9.0	7.84	18.27	15.34	13.37	18.58	19.6	14.72
Merged-chr2-166446013-3	chr2	166445876	166446076	+	817.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1475.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	8.48	4.53	6.28	5.23	11.05	14.11	14.62	4.15	13.96	11.55	15.58	5.33
Merged-chr15-53206104-2	chr15	53206010	53206210	+	817.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	140073.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.27	10.82	8.56	14.88	2.05	10.03	8.97	9.67	11.21	2.01	7.03	5.01
Merged-chr7-110768705-2	chr7	110768638	110768838	+	817.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276301, intron 1 of 14)	CpG	532.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.04	3.52	10.84	4.02	7.36	4.7	8.64	8.72	4.33	16.07	9.55	10.02
Merged-chr15-102510346-3	chr15	102510248	102510448	+	817.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163643, intron 1 of 15)	MIRb|SINE|MIR	352.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	12.11	6.79	7.42	8.04	18.82	13.8	15.94	11.55	14.55	10.54	13.57	13.78
Merged-chr1-92693181-3	chr1	92693039	92693239	+	817.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44298.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	8.08	6.29	17.11	23.73	12.27	7.84	20.59	25.77	8.85	10.54	28.14	7.21
Merged-chr6-97279688-3	chr6	97279564	97279764	+	817.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-26884.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	7.27	8.05	6.28	3.62	5.73	10.66	9.97	9.76	14.16	10.04	10.05	9.4
Merged-chr3-51328666-2	chr3	51328565	51328765	+	817.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	11979.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	2.42	4.78	7.99	6.44	6.55	3.14	8.97	10.77	10.62	6.53	18.09	8.77
Merged-chr12-75511730-3	chr12	75511648	75511848	+	817.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012024, intron 3 of 13)	intron (NM_012024, intron 3 of 13)	84452.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	4.04	6.79	18.25	16.09	11.45	5.02	11.29	15.0	15.34	11.05	11.05	5.95
Merged-chr8-47690755-3	chr8	47690649	47690849	+	817.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15590.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	16.15	11.07	3.99	7.64	18.82	19.76	5.31	12.36	12.39	10.04	21.1	7.52
Merged-chr4-89145581-3	chr4	89145455	89145655	+	817.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	8185.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	5.25	4.02	14.26	2.82	11.86	4.08	5.98	14.1	11.8	7.53	19.09	12.53
Merged-chr7-101300541-1	chr7	101300441	101300641	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152152, intron 1 of 16)	intron (NR_152152, intron 1 of 16)	1547.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	9.69	4.53	1.71	3.62	8.18	12.23	0.33	2.38	8.65	4.02	6.03	6.58
Merged-chr11-102276739-1	chr11	102276639	102276839	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_148953, exon 3 of 5)	exon (NM_148953, exon 3 of 5)	7916.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	5.65	3.02	2.28	4.83	7.77	1.25	1.33	9.95	4.52	6.03	9.04	6.58
Merged-chr19-29572469-2	chr19	29572363	29572563	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081319, intron 8 of 25)	Tigger7|DNA|TcMar-Tigger	50181.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	5.65	9.31	7.99	8.45	10.64	4.7	3.65	10.32	10.62	7.03	8.04	9.4
Merged-chr13-89858741-1	chr13	89858641	89858841	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-116229.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	5.65	0.0	11.41	5.63	2.86	4.39	6.64	8.52	1.77	4.02	8.04	3.13
Merged-chr13-34684017-1	chr13	34683917	34684117	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31094.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	8.48	6.04	5.7	8.45	8.59	2.51	8.97	16.79	6.1	3.01	6.53	5.33
Merged-chr6-13853472-1	chr6	13853372	13853572	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-13530.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	6.46	4.02	1.14	0.8	5.73	5.02	9.3	8.47	4.92	4.52	4.52	0.31
Merged-chr6-92481312-1	chr6	92481212	92481412	+	817.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134460)	promoter-TSS (NM_001134460)	80.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	1.01	1.14	0.8	1.64	1.25	0.33	0.56	10.03	2.51	12.56	12.22
Merged-chr15-101278226-1	chr15	101278126	101278326	+	817.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6075.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	10.9	19.37	0.0	0.0	4.5	9.09	0.0	0.93	8.65	24.1	2.51	3.13
Merged-chr15-86267189-1	chr15	86267089	86267289	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	MTE2b|LTR|ERVL-MaLR	-10486.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	1.62	3.52	1.14	1.61	6.95	0.94	3.65	8.64	4.92	1.51	0.0	1.88
Merged-chr1-166843470-1	chr1	166843370	166843570	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	156260.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	4.04	0.5	2.28	0.8	3.68	2.51	5.98	10.21	5.31	5.02	13.57	2.82
Merged-chrX-49112698-1	chrX	49112598	49112798	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271448, intron 2 of 14)	intron (NM_001271448, intron 2 of 14)	175544.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	2.02	3.52	12.55	6.44	5.73	7.84	2.33	6.42	3.15	3.01	7.54	3.45
Merged-chr9-85424130-1	chr9	85424030	85424230	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	-96980.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.23	1.51	5.7	5.63	8.59	0.31	7.97	9.95	4.52	1.51	10.55	2.51
Merged-chr13-52033183-1	chr13	52033083	52033283	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63558.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.42	1.51	5.7	6.03	7.77	11.29	2.66	13.04	4.72	3.51	9.55	5.01
Merged-chrX-13516696-1	chrX	13516596	13516796	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001284504)	TTS (NM_001284504)	49024.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	6.46	4.02	6.85	14.08	9.82	3.14	11.63	17.8	5.11	3.01	11.05	5.01
Merged-chr18-20961568-3	chr18	20961462	20961662	+	817.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026301, intron 1 of 5)	CpG	16937.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	10.09	13.33	8.56	15.69	12.27	9.72	14.62	19.71	10.42	16.57	12.56	14.72
Merged-chr5-74277909-1	chr5	74277809	74278009	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	MLT1I|LTR|ERVL-MaLR	82583.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.63	1.76	2.28	4.83	3.68	8.47	5.31	7.15	7.47	4.52	7.54	1.25
Merged-chr1-86503613-2	chr1	86503508	86503708	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22949.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.85	3.02	5.13	4.02	10.23	9.09	4.32	8.1	7.28	18.58	13.57	9.4
Merged-chr3-116422908-1	chr3	116422808	116423008	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173553, intron 1 of 13)	intron (NM_001173553, intron 1 of 13)	1124.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	2.83	12.07	1.14	4.42	7.77	10.35	5.98	7.49	5.9	5.52	5.02	1.25
Merged-chr18-46621687-2	chr18	46621589	46621789	+	816.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23985.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	6.86	9.81	27.38	10.86	28.64	14.42	7.31	24.87	5.7	5.52	12.06	10.65
Merged-chr16-50529719-5	chr16	50529610	50529810	+	816.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1208.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	3.63	9.56	1.14	15.28	8.18	9.41	5.65	9.0	8.26	5.52	6.03	12.53
Merged-chr3-60481909-2	chr3	60481831	60482031	+	816.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	9101.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.65	4.53	8.56	4.83	16.36	10.35	5.98	16.07	14.16	10.54	15.07	7.21
Merged-chr3-60526401-3	chr3	60526316	60526516	+	816.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	25237.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	12.52	21.63	9.7	6.84	11.86	23.2	5.31	9.39	18.29	12.55	12.56	15.66
Merged-chr1-160441348-3	chr1	160441254	160441454	+	816.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013862, intron 17 of 20)	intron (NM_013862, intron 17 of 20)	-89783.0	NM_001038621	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	12.92	9.06	7.42	29.36	16.77	10.66	8.97	23.55	12.59	16.57	32.66	12.22
Merged-chr13-64315703-3	chr13	64315639	64315839	+	816.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3029.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	10.09	9.81	10.27	12.47	11.45	18.81	3.32	13.43	14.55	9.54	10.55	7.52
Merged-chr11-116029494-3	chr11	116029394	116029594	+	816.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-822.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	8.08	10.06	7.99	8.85	11.45	17.87	10.3	7.74	30.29	20.08	14.57	13.78
Merged-chr15-6384217-2	chr15	6384119	6384319	+	816.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-2529.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	12.11	9.06	16.54	10.05	15.14	13.48	6.98	15.14	8.85	5.52	19.6	7.21
Merged-chr6-8508539-3	chr6	8508452	8508652	+	816.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040452, exon 2 of 2)	non-coding (NR_040452, exon 2 of 2)	609.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	12.52	3.52	12.55	5.23	7.36	6.59	8.97	12.08	12.78	6.53	8.04	12.22
Merged-chr13-3907430-2	chr13	3907320	3907520	+	816.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	10800.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	11.31	6.29	16.54	12.47	6.95	3.45	7.97	14.8	1.18	4.52	6.53	4.39
Merged-chr1-13360866-3	chr1	13360761	13360961	+	816.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	RLTR12BD_Mm|LTR|ERVK	11568.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	14.54	8.55	2.28	8.85	6.14	16.31	7.97	10.51	13.18	12.55	16.58	10.34
Merged-chr6-135323568-3	chr6	135323480	135323680	+	816.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13196.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	2.83	7.04	6.28	1.61	13.91	19.76	10.63	7.37	14.36	16.57	17.59	6.27
Merged-chr1-51597186-2	chr1	51597059	51597259	+	816.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151621)	promoter-TSS (NR_151621)	-441.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	6.46	4.28	7.99	11.26	8.59	8.47	5.65	7.23	14.36	11.05	20.1	12.84
Merged-chr17-24193125-1	chr17	24193025	24193225	+	816.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163851, intron 1 of 8)	intron (NM_001163851, intron 1 of 8)	6832.0	NM_001163852	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.81	2.01	3.42	2.41	1.64	0.63	0.0	4.26	15.93	22.59	15.07	10.65
Merged-chr4-149709106-2	chr4	149709004	149709204	+	816.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7475.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	8.88	7.55	23.96	16.89	10.64	8.78	10.3	11.61	16.13	7.53	8.04	3.76
Merged-chr3-146159560-3	chr3	146159454	146159654	+	816.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	9380.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.86	7.8	14.83	4.42	13.5	17.56	3.65	11.94	16.33	12.55	18.59	8.77
Merged-chr10-53980069-1	chr10	53979969	53980169	+	816.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 5 of 12)	intron (NM_008548, intron 5 of 12)	95727.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.44	0.0	11.98	3.22	10.23	6.27	13.95	22.49	7.87	13.56	9.04	7.21
Merged-chr10-75784050-3	chr10	75783940	75784140	+	816.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358778, exon 5 of 5)	exon (NM_001358778, exon 5 of 5)	-2618.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	11.31	3.52	18.25	14.88	9.41	9.72	16.28	17.41	12.59	4.52	19.09	8.46
Merged-chr19-53479711-2	chr19	53479622	53479822	+	816.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-14926.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	8.08	11.82	5.13	6.03	12.68	8.78	19.93	21.06	3.74	3.51	4.02	2.82
Merged-chr15-102377106-4	chr15	102377037	102377237	+	816.78125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10169.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	7.27	2.52	3.99	5.23	4.09	5.64	4.65	2.94	4.72	8.03	6.53	4.7
Merged-chr2-159843482-3	chr2	159843367	159843567	+	816.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103874.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	9.69	7.04	2.85	12.07	10.64	4.7	2.66	10.51	13.18	7.03	11.05	4.07
Merged-chr3-146328130-3	chr3	146328018	146328218	+	816.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50826.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	6.86	5.03	3.99	5.23	8.59	19.76	8.3	19.46	25.96	25.61	15.58	11.9
Merged-chr3-129936723-1	chr3	129936623	129936823	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	33483.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	5.65	12.83	5.13	3.62	7.77	11.92	5.98	10.09	3.93	8.03	10.55	6.58
Merged-chr4-40772984-2	chr4	40772878	40773078	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15093.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	6.86	10.06	6.28	6.03	13.09	13.8	8.64	4.77	10.42	9.54	15.07	11.28
Merged-chr9-56209013-2	chr9	56208911	56209111	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 6 of 6)	L1MA5|LINE|L1	-47941.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.81	3.52	6.85	3.22	3.27	10.03	5.98	7.51	14.55	4.52	9.04	12.84
Merged-chr15-59685573-1	chr15	59685473	59685673	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.85	3.02	1.14	4.42	7.36	7.21	14.95	8.8	3.54	0.5	8.04	3.13
Merged-chr6-34350378-2	chr6	34350274	34350474	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3772.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.04	3.27	5.7	4.02	9.41	5.96	7.64	10.49	12.39	16.07	9.04	5.01
Merged-chr13-49242416-3	chr13	49242326	49242526	+	816.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5868.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	10.5	16.35	14.26	7.24	12.68	12.86	13.29	7.85	9.05	8.54	10.55	9.08
Merged-chr4-117137371-3	chr4	117137303	117137503	+	816.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-3440.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	8.48	10.31	17.11	26.14	12.27	16.93	8.97	1.09	14.95	9.04	8.04	5.01
Merged-chr16-45145344-3	chr16	45145253	45145453	+	816.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028756, intron 5 of 6)	intron (NM_028756, intron 5 of 6)	13320.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	8.48	12.58	9.7	9.25	18.82	13.17	10.96	25.91	12.78	7.03	16.08	9.4
Merged-chr8-31981051-1	chr8	31980951	31981151	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62848.0	NM_178591	211323.0	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	5.65	4.53	0.57	8.85	5.32	8.78	8.97	6.98	0.2	0.5	2.01	0.31
Merged-chr16-21392905-3	chr16	21392792	21392992	+	816.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30226.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	16.56	1.26	6.28	17.7	13.5	5.64	4.98	10.65	12.78	10.54	14.57	9.4
Merged-chr19-34621125-3	chr19	34621034	34621234	+	816.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053217, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8677.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	6.46	19.37	7.42	11.66	4.09	11.6	12.95	4.43	17.51	11.05	6.53	3.76
Merged-chr10-44465626-1	chr10	44465526	44465726	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6878.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	1.21	2.26	0.57	3.62	0.82	12.86	11.29	5.72	2.16	2.51	4.02	2.51
Merged-chr1-94053633-1	chr1	94053533	94053733	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-1080.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	3.63	6.29	1.14	3.22	1.64	8.15	11.63	8.5	2.56	1.0	1.0	0.63
Merged-chr5-90685205-1	chr5	90685105	90685305	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.5	1.14	2.82	4.09	7.53	9.97	10.32	4.13	1.51	1.0	0.0
Merged-chr2-130529574-1	chr2	130529474	130529674	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	34175.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.81	3.52	1.14	3.62	4.5	9.72	8.3	10.82	2.95	4.52	4.02	8.77
Merged-chr2-91256847-1	chr2	91256747	91256947	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289678)	promoter-TSS (NM_001289678)	34.0	NM_001289678	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	8.48	4.78	6.28	5.23	10.23	7.53	5.31	9.03	11.01	7.03	5.53	3.45
Merged-chr7-117429121-1	chr7	117429021	117429221	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175645, intron 1 of 11)	MER74B|LTR|ERVL	48142.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	7.27	5.03	0.0	9.65	9.82	14.74	3.65	7.91	7.28	4.52	5.53	4.39
Merged-chr15-66810236-2	chr15	66810142	66810342	+	816.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	21587.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.44	2.01	7.99	4.02	13.09	7.53	12.62	14.3	10.62	7.03	6.53	5.95
Merged-chrX-73910228-2	chrX	73910148	73910348	+	816.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138630, intron 1 of 21)	intron (NM_138630, intron 1 of 21)	1050.0	NM_138630	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	6.86	4.53	15.97	6.84	11.86	6.59	2.99	10.57	12.39	3.51	12.56	2.51
Merged-chr14-20105665-2	chr14	20105589	20105789	+	816.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-22517.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	6.06	7.55	6.85	8.04	9.0	4.39	7.64	11.16	12.39	11.55	7.54	4.07
Merged-chr4-102495682-2	chr4	102495561	102495761	+	816.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-74399.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.06	3.52	4.56	11.66	6.95	4.39	9.97	7.85	14.16	7.03	16.08	6.58
Merged-chr14-77905534-3	chr14	77905446	77905646	+	816.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1307.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	10.09	12.83	9.7	7.64	9.41	3.14	7.64	8.66	34.03	18.58	20.6	12.22
Merged-chr10-60333846-3	chr10	60333766	60333966	+	816.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 40 of 68)	intron (NM_001252635, intron 40 of 68)	-12985.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	15.34	10.82	5.7	0.4	11.45	29.48	7.97	5.27	9.83	15.06	21.61	0.94
Merged-chr7-19343638-3	chr7	19343536	19343736	+	816.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1435.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	18.57	8.3	10.27	11.66	12.68	11.92	5.65	15.81	13.57	17.57	7.03	8.46
Merged-chr11-24076249-2	chr11	24076163	24076363	+	816.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1793.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	10.5	8.8	7.99	11.26	11.86	12.23	13.62	9.59	5.9	3.01	6.03	5.01
Merged-chr2-102988033-2	chr2	102987935	102988135	+	816.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85478.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.42	7.04	7.42	4.83	11.86	8.78	15.94	12.84	11.8	7.53	9.55	7.21
Merged-chr5-143488171-2	chr5	143488073	143488273	+	816.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	23680.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	4.85	5.03	8.56	9.65	15.96	6.59	8.97	10.26	12.98	12.55	14.07	9.4
Merged-chrX-96097017-3	chrX	96096867	96097067	+	816.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	922.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	5.25	11.57	7.42	9.25	6.95	9.41	3.99	8.72	10.03	12.55	9.04	8.14
Merged-chr4-55652032-3	chr4	55651920	55652120	+	816.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119545.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	14.54	19.12	15.97	14.88	10.64	29.79	17.27	14.3	11.6	12.05	24.12	15.66
Merged-chr2-101665446-3	chr2	101665341	101665541	+	816.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12979.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	9.29	8.3	8.56	5.63	18.82	21.32	11.29	13.18	13.37	14.06	19.6	10.34
Merged-chr6-142991745-3	chr6	142991638	142991838	+	816.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27286.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	15.34	9.56	8.56	10.86	10.64	15.68	7.97	19.04	12.98	11.55	6.53	9.08
Merged-chr16-78541081-2	chr16	78540998	78541198	+	816.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19218.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	1.62	4.53	1.14	3.22	12.68	18.19	6.98	10.6	13.37	9.54	15.58	4.39
Merged-chr8-85507184-1	chr8	85507084	85507284	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	14567.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.63	3.77	6.85	5.23	6.95	6.9	2.66	7.46	2.16	3.51	16.08	3.76
Merged-chr16-24766610-1	chr16	24766510	24766710	+	816.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	44755.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.27	8.3	0.0	5.63	1.64	13.48	3.65	0.45	10.23	16.57	11.56	0.31
Merged-chr11-93725926-1	chr11	93725826	93726026	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	159840.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	1.62	0.5	1.14	0.8	6.14	6.59	8.64	13.46	3.93	12.05	10.55	5.33
Merged-chr6-99242301-2	chr6	99242205	99242405	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24210.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.83	9.81	0.57	2.82	6.95	8.15	6.64	12.39	7.08	12.05	12.56	8.46
Merged-chr9-65790283-2	chr9	65790176	65790376	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	37288.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	6.46	6.79	7.99	4.02	11.45	3.76	6.31	10.88	6.29	3.01	2.01	2.51
Merged-chr13-109685916-3	chr13	109685809	109686009	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-217900.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	16.15	14.59	8.56	13.27	9.41	13.8	9.97	15.62	7.47	14.06	5.53	8.14
Merged-chr6-34876214-3	chr6	34876148	34876348	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199145, intron 2 of 3)	intron (NM_199145, intron 2 of 3)	1817.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	8.88	4.02	8.56	10.05	10.23	10.66	3.99	11.92	11.01	15.06	5.02	9.4
Merged-chr1-106401072-3	chr1	106400962	106401162	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145569.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	3.63	5.28	19.4	10.05	6.95	11.29	13.62	18.53	9.83	9.54	19.09	10.96
Merged-chr14-51220222-1	chr14	51220122	51220322	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16527.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	2.42	4.02	14.83	10.86	10.23	5.96	22.59	17.69	0.2	3.01	0.0	1.88
Merged-chr10-67181060-3	chr10	67180937	67181137	+	816.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-4713.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	16.15	6.54	11.41	20.11	14.73	12.54	4.65	11.64	14.36	11.05	15.07	9.71
Merged-chr16-22545925-3	chr16	22545818	22546018	+	816.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13734.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	16.96	2.01	1.71	12.47	12.27	8.15	9.97	12.56	3.74	6.53	20.1	13.16
Merged-chr12-101722424-3	chr12	101722340	101722540	+	816.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3917.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	13.73	5.03	11.41	12.87	10.23	7.53	11.63	15.48	12.78	14.06	12.56	14.41
Merged-chr4-129741402-3	chr4	129741307	129741507	+	816.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011317, intron 1 of 8)	CpG	896.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	7.27	5.53	5.7	9.25	8.59	5.33	2.66	9.11	15.14	11.55	18.59	14.1
Merged-chr5-8351486-3	chr5	8351374	8351574	+	816.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	16686.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	9.29	7.8	17.11	11.66	13.91	9.09	12.29	22.79	14.55	12.55	20.1	10.34
Merged-chr7-90216087-3	chr7	90215961	90216161	+	816.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49371.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	10.5	6.04	9.13	10.46	10.23	6.59	8.3	15.59	4.72	8.54	15.07	10.34
Merged-chr15-58423903-3	chr15	58423801	58424001	+	816.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145959, intron 4 of 23)	intron (NM_145959, intron 4 of 23)	8433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	16.96	7.8	10.84	19.71	12.27	14.11	12.95	28.35	8.65	7.03	19.09	20.68
Merged-chr16-48853885-3	chr16	48853776	48853976	+	816.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	11324.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	11.31	8.55	12.55	14.88	2.86	6.59	9.97	18.7	11.21	4.52	18.59	6.27
Merged-chr3-109467475-3	chr3	109467375	109467575	+	816.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-106532.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.86	5.53	15.97	14.08	17.59	6.59	16.28	27.95	9.05	7.03	14.57	10.34
Merged-chr8-22706113-2	chr8	22706021	22706221	+	816.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010546, exon 2 of 21)	exon (NM_010546, exon 2 of 21)	462.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	7.67	7.55	6.85	11.66	8.59	11.29	4.32	7.99	21.44	18.58	17.08	9.71
Merged-chr7-24112236-2	chr7	24112170	24112370	+	816.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-50.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	9.69	8.3	13.12	10.46	14.32	5.02	8.97	12.81	3.93	7.53	3.01	4.07
Merged-chr16-92443779-2	chr16	92443679	92443879	+	816.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	22390.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	8.08	6.79	10.84	15.69	21.68	14.11	28.9	46.35	1.38	3.01	4.52	3.76
Merged-chr16-57309963-1	chr16	57309863	57310063	+	816.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 6 of 9)	intron (NM_025599, intron 6 of 9)	-17112.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.0	1.51	0.0	0.0	0.0	0.31	0.66	0.62	15.34	13.56	7.03	10.34
Merged-chr2-146872908-1	chr2	146872808	146873008	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033298, intron 4 of 13)	intron (NM_001033298, intron 4 of 13)	17019.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	4.85	3.27	2.28	3.22	9.82	7.84	9.97	14.58	2.75	1.51	3.52	2.19
Merged-chr19-53763086-3	chr19	53763005	53763205	+	816.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	85799.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	6.46	6.54	6.28	7.64	3.27	9.72	7.97	4.82	5.11	13.56	19.6	5.01
Merged-chr18-80455739-3	chr18	80455641	80455841	+	816.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 5 of 12)	intron (NM_026295, intron 5 of 12)	13926.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	6.46	9.81	4.56	4.42	7.36	5.64	0.66	7.65	22.03	11.05	13.06	6.27
Merged-chr16-17409698-2	chr16	17409599	17409799	+	816.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-3385.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	14.54	11.07	10.84	9.25	9.41	17.56	10.63	8.07	7.67	5.52	6.53	2.82
Merged-chr15-86274427-1	chr15	86274327	86274527	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-3248.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	1.62	2.77	9.13	3.62	6.95	2.82	6.98	6.98	4.13	5.52	6.53	5.33
Merged-chr17-32891364-1	chr17	32891264	32891464	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207245, intron 1 of 3)	intron (NM_207245, intron 1 of 3)	239.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	2.83	2.26	0.57	6.84	13.09	7.84	7.64	8.52	6.49	11.55	14.07	6.27
Merged-chr2-11005967-1	chr2	11005867	11006067	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-166415.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.23	1.51	2.28	4.83	4.09	8.78	12.62	7.65	0.79	0.0	3.01	0.31
Merged-chr3-154540273-1	chr3	154540173	154540373	+	816.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56438.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	2.83	2.77	14.83	3.62	0.82	2.2	2.99	0.84	15.14	7.03	14.57	10.02
Merged-chr7-51987077-2	chr7	51986994	51987194	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	18620.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	0.0	9.7	2.01	10.23	13.17	13.62	16.35	8.26	10.04	14.07	6.58
Merged-chr10-8974152-2	chr10	8974053	8974253	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-88083.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.65	4.02	4.56	4.02	9.0	5.96	3.65	10.26	13.57	7.53	15.58	7.52
Merged-chr5-118381516-3	chr5	118381392	118381592	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136265.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	8.08	6.54	0.0	7.24	8.18	10.66	6.31	8.27	5.51	16.07	16.08	6.27
Merged-chr8-69087978-2	chr8	69087869	69088069	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-767.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.83	6.29	10.27	2.41	17.59	10.03	8.3	10.68	7.08	6.53	7.03	4.7
Merged-chr7-141464010-2	chr7	141463906	141464106	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-102.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	14.13	7.04	11.98	14.08	13.5	8.47	12.62	17.97	10.82	7.03	8.54	6.58
Merged-chr10-127620306-4	chr10	127620250	127620450	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	798.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.67	8.3	11.98	8.04	14.73	5.96	20.26	13.74	5.7	11.05	21.61	6.27
Merged-chr12-72843727-3	chr12	72843624	72843824	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74041.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	9.29	7.29	5.7	5.63	6.95	14.42	4.32	7.85	12.19	7.03	5.02	14.72
Merged-chr13-63254063-1	chr13	63253963	63254163	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	14034.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.23	2.52	11.41	2.01	10.64	5.96	12.62	10.04	6.1	3.51	11.56	6.58
Merged-chr15-98541175-3	chr15	98541041	98541241	+	816.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	8.48	8.05	8.56	1.61	15.55	19.44	6.98	11.52	16.72	13.56	10.55	5.64
Merged-chr17-45807619-3	chr17	45807535	45807735	+	816.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	8.08	13.58	23.96	9.65	4.5	15.68	23.58	18.25	11.8	8.03	10.55	12.53
Merged-chr15-98957379-3	chr15	98957292	98957492	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3891.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	8.08	11.82	6.28	12.07	13.5	9.41	12.95	11.41	11.8	5.52	11.56	8.46
Merged-chr10-121334748-3	chr10	121334676	121334876	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	16868.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	7.67	4.28	8.56	11.26	6.14	9.41	6.31	12.79	22.03	18.08	26.63	11.59
Merged-chr3-119814982-3	chr3	119814961	119815161	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31673.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.85	2.26	12.55	18.9	3.68	2.51	12.62	9.93	6.88	4.52	15.58	11.59
Merged-chr10-79726318-3	chr10	79726234	79726434	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008226, intron 3 of 7)	intron (NM_008226, intron 3 of 7)	9700.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	5.25	6.54	13.12	4.02	9.0	10.98	8.64	10.93	16.13	17.07	20.1	16.6
Merged-chr9-110666116-2	chr9	110666016	110666216	+	816.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	9613.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.65	5.28	7.99	10.86	7.36	10.66	6.31	11.78	14.75	12.05	18.09	16.29
Merged-chr18-80392342-2	chr18	80392329	80392529	+	816.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28175.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.02	3.77	6.28	4.42	2.05	3.76	8.3	4.35	2.75	4.02	3.52	0.94
Merged-chr2-173089630-2	chr2	173089546	173089746	+	816.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29879.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	6.06	6.04	2.28	6.03	8.18	3.76	5.31	6.76	16.92	14.06	7.03	9.71
Merged-chr11-54630330-4	chr11	54630205	54630405	+	816.145813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 11 of 28)	(TG)n|Simple_repeat|Simple_repeat	34159.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.63	7.29	10.27	12.07	7.36	6.27	2.66	5.05	5.11	7.53	7.54	10.34
Merged-chr2-167293010-3	chr2	167292907	167293107	+	816.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-52470.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	9.29	6.79	4.56	4.42	18.0	18.19	13.29	26.69	14.95	7.53	17.59	11.9
Merged-chr14-70971649-2	chr14	70971546	70971746	+	816.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 6 of 7)	intron (NM_001302094, intron 6 of 7)	81539.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	8.08	8.3	10.84	14.48	17.18	26.65	31.22	31.09	0.59	2.51	2.01	2.82
Merged-chr12-98831344-3	chr12	98831236	98831436	+	816.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	60314.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	9.69	9.06	17.68	8.45	9.41	9.41	4.98	9.45	15.74	16.07	27.64	8.46
Merged-chr18-11835178-3	chr18	11835064	11835264	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-4110.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	14.13	12.07	6.85	18.1	10.64	4.7	13.29	26.05	11.41	12.55	19.6	12.53
Merged-chr3-37673972-3	chr3	37673870	37674070	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34023.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	13.33	8.55	15.4	22.93	11.05	14.11	8.97	21.79	12.0	9.54	21.1	6.27
Merged-chr3-75203026-3	chr3	75202960	75203160	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-59288.0	NM_172515	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	5.25	7.04	8.56	3.22	6.14	5.02	4.32	13.82	13.77	11.55	15.07	5.01
Merged-chr14-26455063-3	chr14	26454964	26455164	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 12 of 22)	intron (NM_001310445, intron 12 of 22)	79560.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	7.27	6.54	5.13	10.46	24.96	17.56	12.95	28.4	10.62	25.11	20.6	5.64
Merged-chr10-100159985-3	chr10	100159874	100160074	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144153.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	9.29	8.55	8.56	4.02	11.05	5.02	13.62	19.04	11.21	9.54	18.59	6.58
Merged-chr15-95826576-2	chr15	95826473	95826673	+	816.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3499.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	22.21	8.8	29.66	10.05	7.36	14.74	10.96	10.82	22.42	10.04	10.05	7.21
Merged-chr4-135440224-3	chr4	135440142	135440342	+	816.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-6437.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	8.48	12.07	12.55	4.02	15.55	8.78	14.28	7.6	18.29	12.55	9.55	11.28
Merged-chr7-114020874-3	chr7	114020750	114020950	+	816.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145584, intron 7 of 15)	intron (NM_145584, intron 7 of 15)	96931.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	10.9	13.33	11.98	5.23	3.27	16.31	9.97	14.05	9.24	14.56	8.54	13.16
Merged-chrX-11239207-3	chrX	11239082	11239282	+	816.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-60075.0	NM_001111037	100042922.0	Mm.374311	NM_001111037	ENSMUSG00000100626	H2al1a	Gm14483|H2A.L.1|H2AL1|H2al1c|H2al1d|H2al1f|H2al1g|H2al1h|H2al1i	H2A histone family member L1A	protein-coding	18.57	9.56	18.83	44.24	4.5	4.7	8.97	20.24	6.29	10.54	24.12	11.59
Merged-chr12-84801838-3	chr12	84801724	84801924	+	816.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	28554.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	5.65	11.82	6.85	8.45	11.86	19.76	8.64	5.72	12.0	11.55	14.07	4.07
Merged-chr6-115367019-3	chr6	115366929	115367129	+	816.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	4680.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	8.08	8.05	17.68	8.04	14.73	5.96	5.98	11.55	14.55	12.55	15.07	10.34
Merged-chr3-65658144-2	chr3	65658040	65658240	+	816.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1148.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	6.46	7.29	9.13	2.82	4.91	10.66	10.96	14.97	13.18	12.05	8.54	11.59
Merged-chr19-8921164-1	chr19	8921064	8921264	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024256, intron 1 of 4)	intron (NM_024256, intron 1 of 4)	771.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	7.67	4.02	2.28	1.61	2.86	9.41	2.66	6.11	8.06	2.51	7.54	2.19
Merged-chr17-3273950-1	chr17	3273850	3274050	+	816.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52623.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	4.04	3.77	3.42	0.8	0.0	5.02	0.33	4.15	16.33	7.03	9.55	9.08
Merged-chr7-81202525-2	chr7	81202481	81202681	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11223.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.63	1.01	3.42	3.62	2.45	2.82	3.32	7.35	5.31	10.04	7.54	2.51
Merged-chr1-155902215-1	chr1	155902115	155902315	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039184, intron 23 of 37)	intron (NM_001039184, intron 23 of 37)	71040.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	7.27	4.53	6.85	4.42	7.77	3.76	8.64	10.82	2.95	11.55	7.54	11.9
Merged-chr3-31408333-2	chr3	31408226	31408426	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-98007.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.81	3.27	3.42	0.8	7.36	9.41	7.31	12.14	11.8	3.51	11.05	10.65
Merged-chr16-45032807-3	chr16	45032701	45032901	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-61210.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	15.34	9.81	11.98	11.66	12.27	11.29	4.98	19.71	13.96	11.55	10.05	7.52
Merged-chr6-47649006-1	chr6	47648906	47649106	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR18C_MM|LTR|ERVK	6088.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	9.29	8.55	2.28	8.85	5.73	2.82	1.99	1.79	0.59	1.0	1.51	4.07
Merged-chr5-99335197-4	chr5	99335134	99335334	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-82307.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.04	2.52	6.85	2.41	13.91	7.21	2.33	5.69	10.23	6.53	13.06	5.64
Merged-chr14-121455742-1	chr14	121455642	121455842	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49512.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.02	0.25	7.99	8.85	2.45	2.51	9.97	6.25	10.03	10.04	18.59	4.39
Merged-chr8-70892678-1	chr8	70892578	70892778	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053248)	promoter-TSS (NM_053248)	79.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	3.23	4.28	2.28	4.02	4.09	5.33	2.99	1.85	2.95	8.54	3.52	3.13
Merged-chr1-23762996-3	chr1	23762874	23763074	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172124, exon 1 of 4)	exon (NM_172124, exon 1 of 4)	1048.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	9.29	11.32	9.7	10.46	9.41	14.42	3.99	23.83	20.26	21.59	17.08	14.1
Merged-chr10-37226742-1	chr10	37226642	37226842	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87816.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.83	0.5	2.28	0.8	8.18	2.51	3.32	7.09	6.29	7.53	3.01	0.63
Merged-chr2-117114054-1	chr2	117113954	117114154	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7017.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.44	6.29	5.13	0.8	5.73	8.47	7.97	11.83	6.49	3.51	5.02	4.39
Merged-chr11-69681324-1	chr11	69681224	69681424	+	816.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163571, intron 1 of 10)	intron (NM_001163571, intron 1 of 10)	646.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	3.23	4.02	2.28	2.41	2.45	5.33	0.66	3.73	8.46	0.5	0.5	5.33
Merged-chr19-5024373-1	chr19	5024273	5024473	+	816.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007854, intron 1 of 11)	CpG	367.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	5.25	4.53	2.28	6.84	11.05	8.47	3.32	5.21	13.57	6.03	13.06	6.58
Merged-chr11-118147546-1	chr11	118147446	118147646	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18327.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.23	1.51	1.71	4.02	10.64	9.41	2.33	2.66	15.74	3.01	8.04	9.08
Merged-chr8-125829052-2	chr8	125828955	125829155	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 17 of 33)	intron (NM_175561, intron 17 of 33)	-68859.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	2.42	6.79	13.12	14.48	11.05	3.45	9.3	13.35	7.87	5.02	13.06	4.7
Merged-chr2-26516461-1	chr2	26516361	26516561	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12534.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	11.31	4.78	2.85	0.8	13.09	10.98	5.98	4.21	2.56	5.02	7.54	0.94
Merged-chr6-82913457-2	chr6	82913347	82913547	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011350, exon 14 of 14)	3' UTR (NM_011350, exon 14 of 14)	26322.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	10.5	7.8	0.57	8.45	17.18	10.98	11.29	11.19	6.69	5.02	6.03	9.08
Merged-chr11-53796081-1	chr11	53795981	53796181	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	25608.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.85	7.29	3.42	4.83	8.59	5.96	5.98	10.6	5.31	7.53	6.03	14.41
Merged-chr2-127252971-1	chr2	127252871	127253071	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175145, intron 2 of 3)	MIRc|SINE|MIR	4996.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	6.86	5.53	6.28	2.82	4.91	6.9	3.32	8.69	3.34	4.52	6.03	1.88
Merged-chr17-50196148-1	chr17	50196048	50196248	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5651.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.44	2.01	0.57	1.61	1.64	7.84	3.32	8.89	2.36	5.02	5.53	2.51
Merged-chr18-10772417-1	chr18	10772317	10772517	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144860, intron 10 of 20)	intron (NM_144860, intron 10 of 20)	10559.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	6.86	1.51	2.85	5.63	2.45	5.02	4.98	9.84	2.95	3.01	2.51	0.94
Merged-chr3-68798615-1	chr3	68798515	68798715	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	37120.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	6.46	1.76	2.85	3.62	12.27	9.09	1.33	3.06	1.77	1.51	3.01	2.51
Merged-chr11-55100086-1	chr11	55099986	55100186	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010299, intron 1 of 3)	MIRb|SINE|MIR	2101.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.65	4.53	7.42	8.04	7.77	1.88	4.32	9.11	5.7	5.52	8.04	3.76
Merged-chrX-159924929-3	chrX	159924777	159924977	+	815.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 7 of 12)	intron (NM_001135728, intron 7 of 12)	-17816.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	9.29	9.31	8.56	20.51	7.77	6.27	9.97	16.37	11.21	9.54	12.06	3.45
Merged-chr7-142098026-3	chr7	142097925	142098125	+	815.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2741.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	10.5	11.07	14.26	9.25	13.5	12.54	6.31	15.67	16.92	13.56	23.11	7.52
Merged-chr13-30657958-3	chr13	30657843	30658043	+	815.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2116.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	10.9	6.54	10.84	8.85	11.45	6.27	16.61	8.69	12.59	7.53	15.58	14.1
Merged-chr17-17645871-2	chr17	17645774	17645974	+	815.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21385.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.86	12.32	7.42	5.23	6.14	6.27	6.64	7.77	16.33	9.04	6.03	8.46
Merged-chr4-126210134-2	chr4	126210043	126210243	+	815.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7433.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	1.62	0.0	1.14	2.41	7.36	7.84	3.99	5.8	16.72	15.06	23.62	14.72
Merged-chr18-39010174-2	chr18	39010062	39010262	+	815.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	17017.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	18.17	6.54	10.84	13.67	11.86	5.33	16.61	14.3	7.08	3.51	8.54	4.39
Merged-chr2-144337451-3	chr2	144337341	144337541	+	815.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-5361.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	9.29	9.06	10.27	5.63	12.68	15.68	13.62	10.57	12.0	11.55	10.55	8.14
Merged-chr10-84330036-1	chr10	84329936	84330136	+	815.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110435.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.44	1.01	5.13	4.83	13.5	10.03	13.95	13.43	6.1	6.53	12.06	1.57
Merged-chr19-40993585-3	chr19	40993474	40993674	+	815.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008528, intron 1 of 16)	RSINE1|SINE|B4	961.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	16.96	11.32	21.68	20.51	11.45	10.66	8.97	24.81	9.83	6.03	8.04	6.27
Merged-chr7-19360522-3	chr7	19360409	19360609	+	815.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-707.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	8.48	9.31	13.12	7.64	8.59	9.72	10.96	6.62	24.0	8.54	10.55	11.59
Merged-chr3-69598485-3	chr3	69598380	69598580	+	815.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020026, intron 1 of 2)	CpG	480.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.85	8.8	7.99	19.71	14.32	11.29	14.62	13.71	6.1	12.55	10.05	16.92
Merged-chr10-96875905-3	chr10	96875804	96876004	+	815.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-159864.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	12.11	9.06	10.27	12.87	30.68	23.52	25.91	22.23	11.41	12.05	20.6	8.14
Merged-chr10-19583197-3	chr10	19583116	19583316	+	815.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8733.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	10.5	16.6	16.54	16.09	11.45	15.68	13.62	19.12	20.46	11.05	22.11	8.14
Merged-chr1-48595888-1	chr1	48595788	48595988	+	815.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-648728.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	0.81	2.52	1.14	4.02	11.05	7.21	6.31	13.71	7.67	7.53	12.56	3.13
Merged-chr17-27908865-3	chr17	27908761	27908961	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286040)	promoter-TSS (NM_001286040)	381.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	10.5	8.3	13.69	7.64	18.41	12.23	9.63	12.5	11.41	13.05	12.56	11.28
Merged-chr2-155775789-3	chr2	155775689	155775889	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010808, intron 1 of 8)	CpG	447.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	11.71	8.3	11.98	7.24	8.59	12.23	2.66	7.43	14.16	4.52	11.56	12.22
Merged-chr2-170101390-3	chr2	170101281	170101481	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29839.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	8.48	8.8	11.41	9.65	13.5	11.6	6.31	19.65	9.24	15.57	14.57	11.28
Merged-chr3-27622551-3	chr3	27622427	27622627	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-37532.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	6.06	3.02	7.42	8.04	9.82	8.78	19.27	22.07	8.26	15.06	17.08	11.28
Merged-chr13-54589550-3	chr13	54589437	54589637	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	537.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	24.23	8.8	13.12	12.87	14.32	9.72	5.98	13.65	20.65	11.55	11.05	13.16
Merged-chr2-46442185-2	chr2	46442090	46442290	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	745585.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.46	4.53	5.7	3.22	11.86	12.86	11.96	11.78	10.23	12.55	9.55	5.64
Merged-chr4-135241877-2	chr4	135241795	135241995	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	30865.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.06	12.32	7.99	4.83	15.55	6.9	2.99	9.14	17.11	9.04	7.03	4.07
Merged-chr2-148558552-2	chr2	148558457	148558657	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114058.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	11.31	2.52	5.7	7.64	8.18	9.09	3.65	14.89	14.16	7.53	21.1	4.39
Merged-chr4-28815474-2	chr4	28815303	28815503	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010141, intron 1 of 16)	CpG	2258.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	1.62	1.76	1.71	4.02	0.41	2.82	2.66	2.36	6.49	1.51	6.03	2.51
Merged-chr16-38799359-2	chr16	38799220	38799420	+	815.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	883.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	8.88	6.29	18.83	9.65	11.86	5.02	3.99	8.07	1.57	0.0	0.0	0.31
Merged-chr7-75645773-2	chr7	75645686	75645886	+	815.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	190252.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	8.08	9.56	9.7	20.91	6.55	9.41	18.6	13.99	3.15	1.0	2.51	1.57
Merged-chr16-18877962-3	chr16	18877872	18878072	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	1222.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	11.31	12.83	10.84	3.62	11.05	10.35	5.31	8.05	4.92	9.54	12.06	7.21
Merged-chr2-120159070-3	chr2	120158974	120159174	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4499.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	14.94	7.29	5.7	2.41	15.14	15.05	7.97	11.75	14.36	15.06	20.6	14.1
Merged-chr5-24781276-3	chr5	24781169	24781369	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-23426.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	6.86	5.53	7.99	8.85	20.46	11.6	11.96	18.28	19.08	21.59	26.13	20.99
Merged-chr10-95532417-3	chr10	95532300	95532500	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	17238.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	9.69	7.04	7.99	6.44	9.0	19.13	11.29	19.26	12.78	18.08	23.11	11.9
Merged-chr13-49191108-5	chr13	49190991	49191191	+	815.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	3544.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	17.77	15.09	13.12	4.02	18.82	45.78	9.97	17.55	21.44	17.57	25.12	7.52
Merged-chr3-27289096-2	chr3	27289011	27289211	+	815.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27966.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	7.27	6.04	7.42	6.44	7.77	7.84	11.63	11.44	10.62	7.03	6.53	3.76
Merged-chr18-39446846-3	chr18	39446726	39446926	+	815.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	40419.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.08	8.55	12.55	9.65	9.0	19.13	11.29	9.62	23.01	14.56	25.63	9.4
Merged-chr4-116666876-2	chr4	116666768	116666968	+	815.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-15194.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	2.02	4.02	5.7	8.85	8.18	12.23	20.59	26.22	10.42	10.54	14.57	7.83
Merged-chr2-153351529-1	chr2	153351429	153351629	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	5390.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	3.23	3.02	3.42	0.0	10.23	5.96	6.31	9.14	7.08	3.01	8.04	3.76
Merged-chr8-126569499-1	chr8	126569399	126569599	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	23937.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.65	4.53	3.42	12.87	20.05	5.96	7.64	18.25	4.72	2.01	7.03	4.07
Merged-chr4-35131785-3	chr4	35131675	35131875	+	815.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-20280.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	14.54	10.06	11.41	9.25	15.14	32.3	7.64	9.34	14.95	17.07	14.07	4.07
Merged-chr10-74967080-3	chr10	74967000	74967200	+	815.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010311)	promoter-TSS (NM_010311)	-77.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	7.67	12.07	1.71	12.47	15.55	14.42	13.29	18.9	7.08	3.51	13.57	8.77
Merged-chr14-62922830-1	chr14	62922730	62922930	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	57288.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	4.04	1.01	7.42	2.01	9.0	8.78	3.32	11.3	7.67	11.05	6.53	5.33
Merged-chr17-47909410-2	chr17	47909307	47909507	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	15225.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	7.27	5.53	9.13	7.24	15.55	10.98	1.0	10.18	10.03	11.55	12.06	4.07
Merged-chr16-92428280-1	chr16	92428180	92428380	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-28202.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	10.5	3.27	5.7	6.44	10.64	18.19	6.64	9.25	4.52	2.51	3.52	2.82
Merged-chr6-24160019-2	chr6	24159925	24160125	+	815.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 1 of 14)	intron (NM_019481, intron 1 of 14)	8067.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	8.08	11.32	17.11	6.84	4.5	15.99	15.61	8.36	0.2	1.0	2.01	0.94
Merged-chr12-80071044-2	chr12	80070944	80071144	+	815.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41969.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.86	4.78	15.4	4.42	7.36	10.98	1.99	3.9	24.39	23.6	17.59	6.27
Merged-chr7-84163779-3	chr7	84163667	84163867	+	815.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11874.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	10.5	4.78	7.99	11.66	8.59	9.72	10.63	11.94	20.65	17.07	25.63	8.46
Merged-chr5-121843431-3	chr5	121843413	121843613	+	815.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5484.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	7.27	9.56	11.41	1.21	9.82	10.03	6.98	7.85	5.9	11.05	5.02	8.46
Merged-chr19-16456328-2	chr19	16456239	16456439	+	815.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	20672.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	1.62	3.02	4.56	16.89	9.0	13.48	7.31	15.98	12.98	13.05	18.59	11.59
Merged-chr1-163926569-3	chr1	163926451	163926651	+	815.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-2549.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	10.5	10.56	22.82	9.65	9.0	5.33	9.97	11.83	15.93	6.03	9.04	10.96
Merged-chr2-58042077-2	chr2	58041961	58042161	+	815.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10691.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	4.04	2.01	16.54	2.41	11.86	16.93	22.92	25.32	10.62	10.54	18.09	5.95
Merged-chr5-21138775-1	chr5	21138675	21138875	+	815.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-37504.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.63	2.26	5.7	13.27	7.36	4.08	11.96	5.33	5.51	3.01	4.02	5.01
Merged-chr17-15831976-3	chr17	15831869	15832069	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5383.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	19.79	6.54	4.56	13.67	13.09	14.42	5.98	10.29	22.03	16.57	6.53	8.77
Merged-chr4-116655791-3	chr4	116655681	116655881	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4107.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	10.9	11.07	15.4	12.87	10.64	12.86	9.3	15.98	24.59	10.54	25.63	7.21
Merged-chr9-63092163-3	chr9	63092092	63092292	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54788.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	9.29	15.34	12.55	14.48	20.46	6.59	8.97	10.01	12.98	12.05	15.07	10.02
Merged-chr10-60817035-3	chr10	60816935	60817135	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	14546.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	8.08	4.02	5.7	11.66	11.86	24.77	11.29	25.85	13.96	20.08	28.14	11.9
Merged-chr9-58247257-3	chr9	58247160	58247360	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001311088, exon 2 of 9)	exon (NM_001311088, exon 2 of 9)	2526.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	10.5	5.28	14.26	10.05	11.45	10.35	7.31	6.0	22.03	17.07	17.08	21.62
Merged-chr7-139188523-1	chr7	139188423	139188623	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021302)	promoter-TSS (NM_021302)	-29.0	NM_021302	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	9.69	4.78	5.7	3.22	6.95	3.76	7.31	12.25	4.92	1.51	3.52	10.65
Merged-chr4-139218689-3	chr4	139218566	139218766	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	24555.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	10.09	9.81	7.99	4.83	11.05	31.04	17.94	19.74	21.64	11.55	21.61	7.21
Merged-chr14-102660528-2	chr14	102660430	102660630	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	322102.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	5.65	2.77	5.7	6.44	6.55	4.7	2.66	10.93	14.36	4.52	13.57	8.46
Merged-chr7-48983481-1	chr7	48983381	48983581	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	24408.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.23	7.8	2.85	8.85	4.09	7.53	8.97	2.47	4.72	2.01	8.54	2.82
Merged-chr4-149737444-2	chr4	149737355	149737555	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	315.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	9.29	8.8	3.99	7.24	13.91	8.78	10.3	10.29	10.42	8.54	18.59	5.95
Merged-chr11-97440115-2	chr11	97440008	97440208	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10052.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	7.27	6.54	5.13	10.46	15.96	13.8	14.28	11.72	12.19	4.52	5.02	7.52
Merged-chr8-82918143-2	chr8	82918043	82918243	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54787.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	11.31	4.53	7.99	10.46	42.96	52.37	48.83	49.4	3.15	1.0	3.01	0.63
Merged-chr18-38436497-1	chr18	38436397	38436597	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	L1M4|LINE|L1	17590.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.85	4.02	1.14	1.61	3.68	5.33	9.3	9.25	9.44	2.51	6.53	2.82
Merged-chr6-145214195-1	chr6	145214095	145214295	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163628, intron 1 of 2)	URR1A|DNA|hAT-Charlie	3048.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	2.42	2.77	1.14	2.41	10.23	4.08	5.65	10.71	9.83	4.02	4.02	4.39
Merged-chr11-70198526-1	chr11	70198426	70198626	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19B|LTR|ERVK	-15384.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	2.02	0.75	0.0	0.0	5.32	1.88	5.98	8.64	1.57	1.0	0.5	0.0
Merged-chr5-129874109-2	chr5	129874013	129874213	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_145487, intron 2 of 8)	intron (NR_145487, intron 2 of 8)	4975.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	2.83	4.53	3.42	1.61	4.91	8.15	5.65	13.01	10.23	7.53	21.1	4.7
Merged-chr17-8276856-2	chr17	8276768	8276968	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6945.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	4.85	7.8	8.56	1.61	4.91	9.72	3.65	11.27	4.92	3.51	13.06	2.51
Merged-chr14-87125722-1	chr14	87125622	87125822	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 1 of 27)	B3|SINE|B2	15502.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.02	2.52	2.28	1.21	2.45	5.64	5.31	4.82	4.92	4.52	11.05	4.7
Merged-chr14-31410389-3	chr14	31410287	31410487	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	7290.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.04	7.8	2.28	12.47	9.0	15.99	12.62	19.91	9.83	5.52	13.06	2.82
Merged-chr8-78509775-3	chr8	78509693	78509893	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	465.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	13.33	6.29	19.4	9.65	12.27	4.39	11.63	8.55	12.98	6.53	8.04	10.02
Merged-chr5-127616255-1	chr5	127616155	127616355	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1137.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.65	5.53	6.28	4.83	9.41	12.23	8.97	6.87	4.52	6.03	12.06	4.7
Merged-chr18-49777656-2	chr18	49777537	49777737	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22036.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	1.62	3.77	5.7	2.41	8.18	5.02	4.32	11.55	11.41	12.55	19.6	6.27
Merged-chr1-62051628-1	chr1	62051528	62051728	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 3 of 22)	intron (NM_001081050, intron 3 of 22)	84481.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	2.02	4.02	4.56	6.44	11.05	8.15	7.31	8.19	0.0	4.02	2.01	3.13
Merged-chr13-97573778-3	chr13	97573662	97573862	+	815.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 2 of 2)	ORR1G|LTR|ERVL-MaLR	13762.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	8.48	17.36	12.55	17.29	11.45	11.92	14.28	10.91	13.18	15.06	10.05	7.52
Merged-chr19-60666027-3	chr19	60665938	60666138	+	815.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58A|DNA|hAT-Charlie	-85015.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	9.69	7.04	13.12	10.86	10.64	8.15	7.97	21.22	22.62	15.06	8.54	13.78
Merged-chr3-100734760-3	chr3	100734678	100734878	+	815.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-49305.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	8.48	9.06	6.85	9.65	5.73	3.45	6.64	14.58	18.29	14.06	15.58	16.29
Merged-chr17-80130880-3	chr17	80130787	80130987	+	815.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	3416.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	11.71	7.29	7.99	7.24	19.23	16.62	14.28	22.63	26.16	12.55	14.57	19.74
Merged-chr11-65794518-3	chr11	65794417	65794617	+	815.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6158.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	8.48	7.04	17.11	11.66	18.41	8.15	12.95	18.64	17.9	19.58	22.11	10.02
Merged-chr8-36816265-2	chr8	36816153	36816353	+	815.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-83199.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.62	1.76	9.7	14.88	13.91	9.72	27.24	54.65	7.47	5.52	28.64	10.96
Merged-chr1-36231082-3	chr1	36230976	36231176	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198899, intron 2 of 40)	intron (NM_198899, intron 2 of 40)	13226.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	13.33	9.56	14.83	9.25	10.64	11.92	8.64	16.79	14.55	10.04	20.6	11.28
Merged-chr4-142076149-3	chr4	142076029	142076229	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-8169.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.04	5.53	13.69	8.85	4.09	9.41	5.31	12.93	39.53	26.61	38.19	27.57
Merged-chr11-82974152-3	chr11	82974094	82974294	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26B_MM|LTR|ERVK	10871.0	NR_106144	102466846.0		NR_106144	ENSMUSG00000098840	Mir7679	Gm27908|mmu-mir-7679	microRNA 7679	ncRNA	14.54	15.85	5.7	6.03	8.59	9.09	9.3	4.91	6.49	11.55	5.53	5.01
Merged-chr19-47121256-3	chr19	47121142	47121342	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011053, intron 25 of 35)	intron (NM_011053, intron 25 of 35)	17052.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	12.11	12.58	1.14	3.62	7.77	16.93	1.99	6.25	15.14	11.55	14.07	4.39
Merged-chr2-121408506-5	chr2	121408400	121408600	+	815.426208	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153075, intron 4 of 12)	Lx5c|LINE|L1	5292.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	3.63	4.53	1.71	1.21	3.27	6.59	3.99	7.12	7.08	4.52	5.53	8.46
Merged-chr12-73723242-3	chr12	73723136	73723336	+	815.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 10 of 13)	ORR1D1|LTR|ERVL-MaLR	138440.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	12.92	6.54	8.56	7.64	14.73	21.32	15.94	9.08	17.11	16.07	21.1	10.02
Merged-chr4-63590125-3	chr4	63590031	63590231	+	815.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	10633.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	12.92	7.29	22.25	11.66	6.55	9.09	21.92	20.07	8.65	14.06	15.07	9.71
Merged-chr1-72237241-2	chr1	72237198	72237398	+	815.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6695.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	5.25	4.28	2.85	2.82	6.55	1.88	1.33	1.82	2.95	3.01	1.51	0.0
Merged-chr5-53547089-3	chr5	53546990	53547190	+	815.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8689.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	8.88	9.56	6.28	14.88	13.91	16.93	18.93	9.93	14.55	9.54	17.59	7.52
Merged-chr1-191333081-3	chr1	191333012	191333212	+	815.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	L1M2|LINE|L1	7147.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	10.09	4.78	5.7	9.65	11.45	12.23	6.98	11.33	9.64	15.06	16.58	10.65
Merged-chr18-30160442-2	chr18	30160331	30160531	+	815.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112434.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.63	10.31	6.85	22.52	13.5	9.41	10.63	29.33	4.33	4.02	11.05	4.7
Merged-chr17-69215857-2	chr17	69215738	69215938	+	815.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56482.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	11.31	1.76	11.98	3.62	10.23	5.96	12.95	12.98	14.36	8.03	15.07	9.4
Merged-chr11-117968531-4	chr11	117968477	117968677	+	815.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007707, intron 1 of 1)	CpG	789.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	10.09	11.07	4.56	8.45	6.95	10.98	10.3	2.44	10.42	10.04	5.02	7.21
Merged-chr13-109260482-2	chr13	109260423	109260623	+	815.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-64221.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	4.85	6.04	5.7	10.05	7.36	8.15	5.31	7.96	12.39	15.57	10.05	10.65
Merged-chr1-152555199-3	chr1	152555094	152555294	+	815.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	70023.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	15.75	14.09	11.41	18.9	6.14	10.98	6.31	15.7	11.8	15.06	22.11	9.4
Merged-chr17-56469002-3	chr17	56468903	56469103	+	815.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6782.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	12.92	6.79	7.42	12.87	6.95	16.93	2.99	9.7	8.65	8.54	13.06	19.42
Merged-chr1-133132915-3	chr1	133132819	133133019	+	815.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1753.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.04	6.29	5.13	10.46	4.91	13.48	9.3	7.18	6.88	6.03	10.55	14.41
Merged-chr11-116197585-1	chr11	116197485	116197685	+	815.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-1270.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	6.46	0.75	4.56	3.62	3.27	5.33	7.97	10.74	1.97	1.51	0.5	2.82
Merged-chr1-125526152-1	chr1	125526052	125526252	+	815.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34443.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.5	0.0	0.0	7.77	8.15	5.98	12.17	1.18	5.52	9.55	1.88
Merged-chrX-99696358-2	chrX	99696275	99696475	+	815.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-124694.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	7.27	8.05	12.55	16.09	6.55	7.21	7.64	17.58	5.7	6.53	16.08	2.82
Merged-chr5-146761047-1	chr5	146760947	146761147	+	815.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	33909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.81	1.51	0.57	4.02	2.45	0.0	0.66	0.0	12.0	12.05	17.59	2.19
Merged-chr11-118095204-2	chr11	118095110	118095310	+	815.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 27 of 80)	ORR1E|LTR|ERVL-MaLR	34009.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.44	9.81	4.56	6.44	7.77	15.99	5.98	11.86	13.57	17.07	20.1	9.08
Merged-chr1-176827102-1	chr1	176827002	176827202	+	815.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9031.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	4.85	6.04	2.28	3.62	4.09	3.45	5.65	4.93	11.21	4.02	12.06	15.04
Merged-chr11-108215033-3	chr11	108214938	108215138	+	815.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128850.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	8.08	23.14	12.55	14.88	9.82	10.03	8.97	10.57	11.01	18.08	12.56	6.89
Merged-chr10-77523339-3	chr10	77523239	77523439	+	815.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7009.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	4.44	7.29	6.28	10.46	15.55	14.42	9.97	15.17	15.74	9.54	14.57	5.64
Merged-chr10-42759903-3	chr10	42759817	42760017	+	815.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1579.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	6.46	14.09	9.7	10.86	7.77	26.65	9.3	17.8	23.41	11.55	16.58	12.22
Merged-chr5-139483667-3	chr5	139483550	139483750	+	815.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	841.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	14.54	7.04	7.42	3.22	15.55	30.1	10.96	28.07	21.64	17.07	15.58	14.1
Merged-chr4-35068386-2	chr4	35068294	35068494	+	815.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-83661.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	6.06	11.57	5.13	4.42	17.59	8.15	9.97	10.32	4.72	3.51	5.53	5.64
Merged-chr13-104108671-2	chr13	104108556	104108756	+	815.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	958.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	2.83	6.29	4.56	3.62	14.73	13.48	26.57	27.73	10.42	9.54	7.54	8.77
Merged-chr10-43833069-2	chr10	43832987	43833187	+	815.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131055, exon 3 of 3)	non-coding (NR_131055, exon 3 of 3)	7180.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	4.04	4.02	7.99	4.83	6.14	9.72	12.29	11.02	13.77	5.52	15.58	9.08
Merged-chr8-110998360-3	chr8	110998253	110998453	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-530.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	6.46	8.8	12.55	20.11	14.73	13.8	3.32	7.68	15.14	10.54	10.55	7.21
Merged-chrX-155212183-3	chrX	155212049	155212249	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291865)	TTS (NM_001291865)	4300.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	7.27	7.29	5.7	13.67	10.64	6.9	15.61	20.86	6.69	11.05	15.07	10.02
Merged-chr1-154103779-3	chr1	154103672	154103872	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-97415.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	27.05	21.13	15.97	10.86	13.09	31.98	11.29	11.16	13.18	10.04	8.04	2.51
Merged-chr5-113993305-3	chr5	113993178	113993378	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 1 of 14)	CpG	479.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	9.29	10.06	11.98	8.85	7.77	9.72	9.3	6.79	10.62	17.57	13.06	11.28
Merged-chr13-101805849-3	chr13	101805740	101805940	+	815.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37623.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	12.11	13.33	18.83	10.86	9.82	10.98	9.63	14.3	23.21	11.55	30.65	2.51
Merged-chr13-105048925-2	chr13	105048837	105049037	+	815.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	5993.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	11.31	9.31	3.42	14.08	10.64	10.03	13.29	9.9	4.92	7.03	4.02	2.51
Merged-chr5-64810661-2	chr5	64810566	64810766	+	815.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7143.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.65	2.01	7.99	6.03	9.41	4.39	5.98	8.72	7.47	17.57	3.52	10.96
Merged-chr3-87359481-3	chr3	87359388	87359588	+	815.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1607.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.25	13.83	6.28	10.86	24.14	20.07	19.93	17.16	9.05	4.02	11.05	11.9
Merged-chr11-113733756-3	chr11	113733637	113733837	+	815.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	17423.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	26.25	22.13	15.97	19.31	14.73	10.03	3.32	8.13	5.7	7.03	10.55	7.52
Merged-chr12-108907005-1	chr12	108906905	108907105	+	815.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	12733.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	4.85	1.76	3.42	2.41	8.59	17.87	7.97	15.2	6.29	5.52	14.57	5.95
Merged-chr16-22348735-3	chr16	22348629	22348829	+	815.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53741.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	8.48	6.54	3.99	11.66	17.18	16.62	11.29	21.53	10.62	11.05	18.09	8.77
Merged-chr10-40643455-3	chr10	40643351	40643551	+	815.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133568, intron 3 of 4)	MTC|LTR|ERVL-MaLR	13440.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	11.31	8.8	9.13	5.63	12.68	24.77	2.99	4.79	24.59	28.62	43.72	20.05
Merged-chr11-40763587-2	chr11	40763498	40763698	+	815.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-8312.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	6.46	5.03	6.85	11.26	11.45	10.98	10.63	7.49	11.01	6.03	14.07	4.7
Merged-chr2-166127319-2	chr2	166127239	166127439	+	815.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252579, intron 2 of 20)	intron (NM_001252579, intron 2 of 20)	27946.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.4	10.31	7.99	16.49	0.0	2.51	5.98	10.79	3.74	3.51	8.04	3.45
Merged-chr7-35745325-2	chr7	35745223	35745423	+	815.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	9131.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	8.08	6.54	22.82	9.65	3.68	3.76	6.98	8.38	0.39	4.52	0.0	1.57
Merged-chr7-116328043-3	chr7	116327934	116328134	+	815.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63D|DNA|hAT-Blackjack	6156.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	8.08	7.04	10.27	12.07	17.59	21.95	8.64	15.08	23.41	16.57	28.64	11.59
Merged-chr16-90386303-3	chr16	90386311	90386511	+	815.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	14.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	6.46	9.31	6.28	4.83	2.86	7.21	5.98	11.21	8.85	9.04	12.56	5.33
Merged-chr13-24447506-3	chr13	24447413	24447613	+	815.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	32391.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	11.71	7.04	27.38	15.69	12.68	12.54	11.63	23.97	13.18	13.56	14.57	9.71
Merged-chr3-149461820-3	chr3	149461711	149461911	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187074.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	9.29	8.8	17.11	12.47	6.95	10.98	9.63	12.36	8.46	8.54	19.6	4.7
Merged-chr19-34420620-3	chr19	34420528	34420728	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54507.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	6.86	5.03	9.13	8.04	13.09	11.29	13.29	10.74	6.1	23.6	17.08	14.41
Merged-chrX-152218667-3	chrX	152218577	152218777	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005475, intron 10 of 13)	intron (NM_001005475, intron 10 of 13)	-14550.0	NM_013668	20591.0	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	8.48	10.56	18.25	6.84	4.09	26.03	7.64	10.4	16.13	12.55	13.06	3.13
Merged-chr6-114224684-3	chr6	114224583	114224783	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172890, intron 6 of 13)	intron (NM_172890, intron 6 of 13)	-57952.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	13.33	5.79	18.25	14.88	7.77	12.86	3.99	15.25	8.06	12.55	15.58	6.58
Merged-chr8-88099045-3	chr8	88098944	88099144	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	19563.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	12.92	12.83	9.7	16.89	6.55	11.92	8.3	9.14	12.39	18.58	13.06	6.58
Merged-chr11-85123672-4	chr11	85123545	85123745	+	815.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029934, intron 1 of 33)	B1_Mur1|SINE|Alu	16310.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	1.21	2.77	0.0	9.65	2.86	2.82	7.64	3.31	9.83	7.03	5.53	5.33
Merged-chr2-11239728-2	chr2	11239631	11239831	+	815.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008859, intron 4 of 17)	intron (NM_008859, intron 4 of 17)	67349.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	12.11	9.06	12.55	13.67	4.09	11.6	10.3	14.24	7.47	11.55	9.04	8.77
Merged-chr7-28547764-3	chr7	28547647	28547847	+	815.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081115)	promoter-TSS (NM_001081115)	-493.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	15.75	4.53	13.12	10.46	13.91	9.41	2.99	16.57	11.01	13.05	14.07	5.64
Merged-chr4-116777221-2	chr4	116777124	116777324	+	815.075012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146151, intron 4 of 10)	L2|LINE|L2	30335.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	9.69	12.83	14.83	8.45	16.36	8.15	20.26	14.24	7.28	4.02	5.02	5.64
Merged-chr7-16192549-2	chr7	16192434	16192634	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17139.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	7.67	4.78	9.13	1.61	8.59	7.21	7.31	5.38	11.8	10.54	14.07	2.82
Merged-chr5-99268913-1	chr5	99268813	99269013	+	815.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-15986.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.29	10.82	0.57	2.01	6.14	5.96	3.32	4.54	2.95	4.52	1.0	0.0
Merged-chr6-146662856-2	chr6	146662758	146662958	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046277, intron 1 of 2)	B3A|SINE|B2	5640.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	2.42	5.53	6.85	10.05	4.91	7.84	5.65	10.23	10.82	10.04	18.59	8.46
Merged-chr9-32485528-1	chr9	32485428	32485628	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	55924.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.25	4.53	1.14	12.07	7.77	7.84	13.62	12.45	6.88	9.54	19.6	1.88
Merged-chr14-27383662-1	chr14	27383562	27383762	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 4 of 10)	intron (NM_027871, intron 4 of 10)	22273.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.23	3.02	0.0	1.61	8.18	7.53	7.31	8.8	4.52	3.01	2.01	5.64
Merged-chr11-70687185-3	chr11	70687097	70687297	+	815.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	908.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	8.08	14.84	7.99	6.44	10.64	19.76	9.97	13.99	16.72	12.55	8.54	6.89
Merged-chrX-47880277-1	chrX	47880177	47880377	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053123, intron 5 of 23)	intron (NM_053123, intron 5 of 23)	12336.0	NM_053123	93761.0	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	5.65	2.52	3.42	1.21	2.45	3.76	8.3	9.62	5.11	0.0	5.02	5.01
Merged-chr17-48265608-1	chr17	48265508	48265708	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	1313.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	2.83	2.26	3.42	2.01	6.95	6.59	10.63	4.71	6.49	5.02	4.02	3.45
Merged-chr18-39636740-1	chr18	39636640	39636840	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136757.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.67	4.53	3.99	4.02	6.14	2.2	6.98	7.32	4.33	9.54	8.04	6.58
Merged-chr17-47610869-1	chr17	47610769	47610969	+	815.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	623.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	5.25	6.04	10.27	5.23	4.5	3.45	6.98	5.66	6.1	3.51	15.07	9.4
Merged-chr15-86228406-2	chr15	86228317	86228517	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	Tigger5b|DNA|TcMar-Tigger	13958.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.04	4.02	7.99	3.22	16.77	16.93	10.63	10.32	15.93	12.55	13.06	9.4
Merged-chr12-76536912-2	chr12	76536788	76536988	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	3328.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	5.25	6.04	5.7	2.01	2.86	10.03	9.97	3.22	16.13	14.06	8.54	4.07
Merged-chr15-88505274-1	chr15	88505174	88505374	+	815.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95028.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	2.83	6.54	4.56	9.65	2.05	1.57	0.0	3.76	11.01	11.55	13.57	5.33
Merged-chr12-35532318-1	chr12	35532218	35532418	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2671.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.04	7.29	4.56	4.02	2.86	6.59	3.99	7.23	8.26	7.03	8.54	6.89
Merged-chr12-85818611-3	chr12	85818512	85818712	+	815.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360813)	TTS (NM_001360813)	6281.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	17.36	10.06	9.7	12.47	11.45	19.13	7.64	8.61	13.37	10.54	18.59	4.07
Merged-chr17-80693024-2	chr17	80692925	80693125	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	35000.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.4	0.0	0.0	4.02	13.09	20.07	8.97	10.01	13.96	12.05	10.55	4.07
Merged-chr7-80575939-3	chr7	80575833	80576033	+	814.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40814.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	8.88	8.8	13.69	7.24	3.68	13.8	6.31	9.22	14.95	13.56	14.07	10.02
Merged-chr1-66859674-3	chr1	66859571	66859771	+	814.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	RMER16|LTR|ERVK	3638.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	26.65	24.4	13.12	53.89	19.64	7.21	10.96	9.45	6.88	6.03	12.56	6.58
Merged-chr5-31488071-3	chr5	31487963	31488163	+	814.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026296, exon 2 of 2)	exon (NM_026296, exon 2 of 2)	2204.0	NM_026296	67656.0	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	8.48	7.04	10.27	16.09	17.59	10.98	6.31	17.66	12.59	14.06	21.1	10.34
Merged-chr10-56944585-3	chr10	56944476	56944676	+	814.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	512595.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	16.96	9.31	14.26	12.47	26.59	16.93	13.29	31.63	11.8	15.57	14.57	6.58
Merged-chr2-92485817-2	chr2	92485726	92485926	+	814.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25308.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.81	2.77	1.14	2.41	10.23	8.47	2.99	8.07	17.51	11.05	15.07	12.53
Merged-chr3-75743838-2	chr3	75743735	75743935	+	814.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88104.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	10.5	3.02	6.85	10.86	11.05	11.29	16.28	21.95	6.1	3.51	21.61	8.14
Merged-chr5-139407285-3	chr5	139407161	139407361	+	814.9087519999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	874.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	9.29	3.27	9.13	10.86	4.5	6.59	9.3	5.33	7.87	4.02	11.05	8.14
Merged-chr1-151105418-3	chr1	151105319	151105519	+	814.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32615.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	9.69	7.04	3.42	14.88	22.91	10.03	10.3	18.48	9.24	21.59	22.61	8.14
Merged-chr6-13070619-3	chr6	13070530	13070730	+	814.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027992, intron 2 of 8)	intron (NM_027992, intron 2 of 8)	871.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	4.44	10.31	5.7	4.42	12.27	6.9	12.95	4.23	8.06	9.04	11.56	9.08
Merged-chr13-37592259-3	chr13	37592177	37592377	+	814.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-233761.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.65	7.55	7.42	9.25	10.23	23.83	7.64	10.07	13.77	7.53	21.61	10.96
Merged-chr3-61415409-3	chr3	61415305	61415505	+	814.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50898.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	10.9	5.53	10.84	7.24	6.14	18.5	9.63	7.63	19.67	15.06	12.56	3.13
Merged-chr4-63545869-3	chr4	63545755	63545955	+	814.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024173, intron 1 of 2)	intron (NM_024173, intron 1 of 2)	1090.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	13.73	8.05	10.84	13.27	10.64	10.03	17.94	18.28	14.55	18.58	14.07	9.4
Merged-chr14-14603668-3	chr14	14603561	14603761	+	814.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99364.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	8.88	11.57	12.55	10.05	15.96	10.03	11.96	18.95	13.37	13.05	14.57	6.89
Merged-chr13-74854540-3	chr13	74854444	74854644	+	814.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45784.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	18.57	10.82	7.99	15.69	18.0	10.98	9.97	22.26	6.69	11.55	23.62	16.92
Merged-chr11-117196933-2	chr11	117196827	117197027	+	814.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2734.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	13.73	6.04	15.4	5.23	8.18	18.19	7.97	16.68	10.62	3.51	7.54	4.7
Merged-chr5-115262086-3	chr5	115262003	115262203	+	814.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	10792.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.06	16.35	12.55	11.66	3.68	16.62	14.62	11.44	13.18	14.56	11.05	6.27
Merged-chr1-127836782-3	chr1	127836694	127836894	+	814.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011737, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	3496.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	6.86	6.54	17.68	10.05	10.23	12.86	12.29	16.51	15.74	7.53	17.08	10.34
Merged-chr8-46672915-3	chr8	46672807	46673007	+	814.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55616.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	8.08	6.29	13.12	4.02	16.36	11.29	11.96	12.95	21.44	9.04	23.11	12.22
Merged-chr2-102940327-2	chr2	102940239	102940439	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-38674.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.02	0.75	2.28	0.8	12.27	5.64	6.31	12.0	12.78	12.55	6.03	2.51
Merged-chr9-73085941-2	chr9	73085855	73086055	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301230, intron 5 of 6)	intron (NM_001301230, intron 5 of 6)	-16443.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	5.65	6.04	7.99	2.41	10.23	5.02	5.98	7.46	10.03	14.06	9.55	7.52
Merged-chr12-100936317-3	chr12	100936228	100936428	+	814.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 20 of 29)	intron (NM_026681, intron 20 of 29)	-28130.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	11.31	10.31	5.7	4.83	5.32	13.17	11.29	11.78	5.7	7.53	12.06	9.4
Merged-chr12-33041619-1	chr12	33041519	33041719	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024478, intron 15 of 19)	MIRb|SINE|MIR	51256.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.25	3.77	3.99	9.25	11.05	6.59	7.97	12.5	14.55	3.01	10.55	4.39
Merged-chr1-51539829-2	chr1	51539725	51539925	+	814.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	56893.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	8.08	9.06	15.97	11.26	12.27	11.29	7.64	15.48	9.24	3.01	24.62	6.27
Merged-chr2-170169321-1	chr2	170169221	170169421	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26646.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.63	3.27	6.85	10.05	21.27	8.78	5.31	5.41	5.11	6.03	4.02	2.51
Merged-chr14-61789195-2	chr14	61789097	61789297	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106824.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.4	1.76	2.28	4.42	0.0	12.23	5.31	5.41	46.42	41.67	39.19	23.49
Merged-chr15-89149696-3	chr15	89149564	89149764	+	814.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011161)	promoter-TSS (NM_011161)	-58.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	17.77	15.09	19.4	7.64	7.77	18.81	8.3	11.52	21.44	12.55	15.58	8.14
Merged-chr6-73436691-2	chr6	73436575	73436775	+	814.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_108032)	TTS (NR_108032)	32992.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	12.11	8.8	22.82	16.09	0.0	0.0	0.33	0.42	10.03	21.09	22.61	3.45
Merged-chr16-65454020-2	chr16	65453932	65454132	+	814.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-66597.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.44	2.26	9.7	6.03	6.55	12.86	10.3	3.84	12.19	12.55	22.61	6.58
Merged-chr19-16780451-3	chr19	16780375	16780575	+	814.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173028, intron 1 of 71)	CpG	458.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	27.46	10.31	11.41	10.46	15.55	9.09	16.94	13.23	13.77	10.54	11.56	21.3
Merged-chr5-77387021-1	chr5	77386921	77387121	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21024.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	7.27	6.29	6.85	0.8	7.77	9.72	4.98	10.63	10.03	4.52	3.01	1.88
Merged-chr6-106458879-1	chr6	106458779	106458979	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	290158.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.23	3.02	6.85	2.82	7.77	6.59	4.98	7.93	2.16	1.0	7.54	0.63
Merged-chr10-127564000-1	chr10	127563900	127564100	+	814.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 41 of 88)	intron (NM_008512, intron 41 of 88)	-29441.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.63	8.55	7.42	1.21	2.86	7.84	6.98	3.22	11.8	10.54	13.57	5.01
Merged-chr12-80867184-1	chr12	80867084	80867284	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	57263.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	8.08	4.28	3.99	2.82	6.55	9.72	7.31	10.21	4.52	1.0	7.03	3.45
Merged-chr14-30671280-3	chr14	30671168	30671368	+	814.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	16893.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	10.09	8.55	9.13	7.64	12.27	8.78	13.95	9.22	8.85	20.08	20.6	12.84
Merged-chr6-92437335-1	chr6	92437235	92437435	+	814.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134461, intron 2 of 7)	intron (NM_001134461, intron 2 of 7)	44057.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	1.62	1.51	0.0	1.61	0.82	0.63	3.32	2.38	12.19	8.54	13.57	13.16
Merged-chr14-106760274-1	chr14	106760174	106760374	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-273754.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.81	0.0	4.56	3.62	7.77	4.39	8.64	15.76	6.49	1.51	2.51	1.88
Merged-chr6-54116442-3	chr6	54116340	54116540	+	814.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	L3|LINE|CR1	76508.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.86	7.04	11.41	13.67	31.09	29.79	28.57	30.87	10.42	12.55	16.58	2.82
Merged-chr4-99126998-2	chr4	99126896	99127096	+	814.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-6081.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	4.04	7.29	2.28	6.03	9.41	15.99	10.63	25.35	17.51	10.54	12.56	11.9
Merged-chr5-139734952-3	chr5	139734866	139735066	+	814.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1367.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	8.48	6.54	7.99	2.01	6.55	12.23	9.97	12.7	22.62	22.59	13.06	13.47
Merged-chr9-122901204-3	chr9	122901112	122901312	+	814.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2034.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	12.92	6.29	10.27	9.65	3.27	8.47	8.97	5.41	81.23	58.24	88.94	47.3
Merged-chr13-94144222-3	chr13	94144122	94144322	+	814.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	86426.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	12.52	5.79	14.26	16.49	15.55	6.27	17.94	23.92	4.92	5.02	10.55	8.77
Merged-chrX-98963910-2	chrX	98963799	98963999	+	814.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	26118.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	5.65	3.77	6.85	4.83	22.91	10.66	12.29	14.69	14.95	10.04	12.56	5.01
Merged-chr7-28371733-4	chr7	28371647	28371847	+	814.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290542, exon 1 of 19)	5' UTR (NM_001290542, exon 1 of 19)	915.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	12.11	12.83	16.54	2.41	5.73	9.41	5.65	4.43	5.7	16.57	7.03	7.52
Merged-chr17-48275631-3	chr17	48275510	48275710	+	814.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172623)	TTS (NM_172623)	11315.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.25	4.78	7.99	11.26	7.36	7.53	19.27	18.67	26.36	20.08	38.19	25.37
Merged-chr2-25357926-3	chr2	25357842	25358042	+	814.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1610.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	7.27	8.8	4.56	0.8	31.5	40.45	6.31	10.37	24.98	35.65	22.61	8.14
Merged-chr17-45566270-2	chr17	45566185	45566385	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357105, intron 3 of 3)	intron (NM_001357105, intron 3 of 3)	2349.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	7.67	7.55	9.7	0.8	3.68	9.72	1.66	6.11	8.26	12.05	5.02	4.39
Merged-chr9-7897760-2	chr9	7897645	7897845	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24575.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	4.85	5.28	9.7	3.62	9.82	7.21	3.32	10.85	15.74	6.53	8.54	10.34
Merged-chr17-86787973-1	chr17	86787873	86788073	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34109.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.42	0.0	0.57	4.02	4.91	8.15	7.31	11.24	2.75	1.0	1.51	0.94
Merged-chr16-15592334-1	chr16	15592234	15592434	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159351, intron 1 of 2)	B1F|SINE|Alu	2184.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	5.25	3.02	4.56	6.44	5.32	6.59	7.64	6.48	8.46	6.03	3.52	0.63
Merged-chr4-40721099-1	chr4	40720999	40721199	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_077221, exon 3 of 3)	non-coding (NR_077221, exon 3 of 3)	1218.0	NR_077221	622208.0	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	4.44	2.01	9.13	0.8	10.64	5.96	4.65	8.27	9.44	9.04	4.02	3.45
Merged-chr12-12299869-2	chr12	12299773	12299973	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	MIR|SINE|MIR	37734.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.04	2.52	6.85	1.21	6.55	8.15	2.66	8.97	8.85	13.05	9.04	8.46
Merged-chr17-42939667-1	chr17	42939567	42939767	+	814.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63243.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.85	3.77	1.14	2.01	1.64	4.39	1.33	3.67	14.36	12.55	6.53	7.52
Merged-chr4-83407950-2	chr4	83407832	83408032	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-9792.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	9.29	10.56	6.85	14.08	4.5	1.57	10.3	5.66	3.93	1.51	4.52	1.25
Merged-chr12-85388795-1	chr12	85388695	85388895	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14078.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	11.71	4.02	2.85	4.83	9.41	11.92	1.33	6.5	6.1	10.04	6.03	6.58
Merged-chr4-103341414-1	chr4	103341314	103341514	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	27568.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	1.62	3.27	4.56	6.84	5.73	8.47	5.98	13.23	1.38	1.0	1.0	3.13
Merged-chr11-84141928-2	chr11	84141836	84142036	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12368.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	12.11	16.1	12.55	8.45	9.41	18.19	9.63	2.61	11.21	20.59	10.05	6.27
Merged-chr9-32656999-1	chr9	32656899	32657099	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39043.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.65	4.02	4.56	4.83	5.73	9.41	5.98	11.5	4.33	2.01	4.52	2.51
Merged-chr14-104039055-1	chr14	104038955	104039155	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11913.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.23	1.51	0.57	6.84	6.95	5.02	0.66	8.64	10.82	2.01	9.55	4.39
Merged-chr15-59106099-1	chr15	59105999	59106199	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24073.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.04	0.75	0.0	0.8	8.18	14.42	3.99	8.02	3.15	2.51	1.0	0.31
Merged-chr1-157008863-2	chr1	157008753	157008953	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69227.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	13.73	4.78	5.7	8.85	25.36	15.99	7.97	14.3	4.72	6.03	14.57	6.58
Merged-chr11-51584216-1	chr11	51584116	51584316	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	-541.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	11.31	16.85	13.12	8.45	12.27	17.56	17.27	5.61	17.11	27.11	20.1	18.8
Merged-chr11-69654820-1	chr11	69654720	69654920	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009235)	promoter-TSS (NM_009235)	-217.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	1.62	5.79	3.42	7.64	5.32	2.51	8.64	10.09	2.75	4.52	4.02	2.82
Merged-chr2-167931588-1	chr2	167931488	167931688	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-739.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	1.62	4.28	5.7	2.41	9.41	11.6	5.65	3.62	10.82	7.53	4.52	4.07
Merged-chr19-37178064-2	chr19	37177963	37178163	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-2000.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	3.23	5.28	2.28	11.26	4.09	6.59	6.98	4.96	10.62	3.51	16.58	5.33
Merged-chr1-134063917-3	chr1	134063782	134063982	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15273.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	9.69	5.28	17.68	5.63	13.5	15.99	7.31	17.02	11.6	9.04	12.56	7.52
Merged-chr15-93379442-2	chr15	93379335	93379535	+	814.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	18899.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	7.67	13.33	7.99	8.45	7.77	6.27	1.0	5.55	13.37	5.02	14.57	12.22
Merged-chr1-80646808-3	chr1	80646698	80646898	+	814.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	18554.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	10.09	10.82	21.68	17.7	3.68	6.27	14.95	16.12	10.82	6.53	14.07	5.64
Merged-chr7-107516881-3	chr7	107516788	107516988	+	814.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021889, intron 6 of 6)	Lx8|LINE|L1	-50545.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	10.5	7.04	12.55	25.74	14.73	8.78	21.59	21.17	17.51	17.57	17.59	9.71
Merged-chr5-19897264-3	chr5	19897162	19897362	+	814.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-10256.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	10.5	7.8	11.41	6.84	11.05	10.03	14.28	18.9	27.14	22.09	26.63	8.46
Merged-chr2-4570631-4	chr2	4570553	4570753	+	814.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	10899.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	10.5	7.29	2.28	12.07	12.68	7.53	3.32	8.02	6.49	5.02	3.01	3.45
Merged-chr18-9790610-1	chr18	9790510	9790710	+	814.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	L1_Mus2|LINE|L1	82962.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.27	4.78	10.84	10.05	17.59	17.56	8.97	9.36	2.75	3.01	3.01	0.31
Merged-chr10-93577694-3	chr10	93577588	93577788	+	814.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-11725.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	9.69	16.1	8.56	11.26	9.41	10.66	5.65	16.65	24.59	28.62	32.66	13.78
Merged-chr18-10823068-3	chr18	10822949	10823149	+	814.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37497.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	9.69	8.3	14.26	6.03	9.41	8.78	15.61	20.92	11.01	11.05	14.57	11.28
Merged-chr14-46881127-3	chr14	46881024	46881224	+	814.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1841.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.46	8.05	13.69	10.46	13.91	6.27	5.31	14.05	17.11	16.57	21.61	12.84
Merged-chr7-96790515-1	chr7	96790415	96790615	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045874)	TTS (NR_045874)	11034.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	7.27	3.77	8.56	6.03	1.64	10.66	6.98	10.26	2.36	1.51	2.51	3.13
Merged-chr3-27275415-2	chr3	27275314	27275514	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-41663.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	11.31	5.03	9.7	7.24	9.0	18.5	6.64	15.9	18.1	11.05	15.58	16.29
Merged-chr12-33158423-3	chr12	33158314	33158514	+	814.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	10728.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	9.29	8.3	3.42	6.03	11.05	15.68	2.33	4.15	24.78	14.56	11.05	15.98
Merged-chr9-65983004-1	chr9	65982904	65983104	+	814.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173185, intron 5 of 13)	intron (NM_173185, intron 5 of 13)	73994.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	25.96	17.57	12.56	10.96
Merged-chrY-90741178-1	chrY	90741078	90741278	+	814.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13872.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.82	0.0	0.66	1.82	8.85	10.54	7.03	13.16
Merged-chr3-31412038-1	chr3	31411938	31412138	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-101719.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.81	1.01	0.0	0.0	1.64	9.41	5.98	7.77	8.65	4.02	2.01	1.88
Merged-chr8-83169907-3	chr8	83169800	83170000	+	814.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	4548.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	14.13	11.07	2.85	9.25	2.86	15.68	3.99	7.96	11.8	8.54	9.55	4.7
Merged-chr3-132084377-1	chr3	132084277	132084477	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	-915.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	6.06	4.53	12.55	5.63	9.0	6.27	16.94	14.47	8.06	3.01	6.03	5.95
Merged-chr10-85190142-1	chr10	85190042	85190242	+	814.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5088.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	6.86	7.55	1.14	0.8	9.82	16.93	3.65	2.69	18.1	8.03	12.56	8.77
Merged-chr8-104293517-1	chr8	104293417	104293617	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027022)	promoter-TSS (NM_027022)	-336.0	NM_027022	73381.0	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	1.21	1.51	2.85	2.41	8.18	4.39	9.63	8.3	4.13	4.52	2.51	3.45
Merged-chr18-67343424-3	chr18	67343397	67343597	+	814.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007702)	promoter-TSS (NM_007702)	-67.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	6.06	3.02	6.85	10.86	10.23	15.68	4.32	6.76	6.1	5.02	11.56	7.21
Merged-chr10-80571054-3	chr10	80570955	80571155	+	814.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	6241.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	17.36	11.32	11.41	10.86	21.68	9.41	8.97	9.0	14.75	11.05	34.17	9.71
Merged-chr9-35107331-3	chr9	35107251	35107451	+	814.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-9377.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.06	7.29	10.84	10.05	6.55	13.17	12.62	11.97	15.14	7.53	14.07	5.95
Merged-chr5-29258533-3	chr5	29258402	29258602	+	814.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020295, intron 11 of 16)	intron (NM_020295, intron 11 of 16)	62509.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	8.48	10.06	6.85	6.44	11.05	22.89	6.64	15.28	10.82	10.04	22.11	16.92
Merged-chr6-5583191-2	chr6	5583097	5583297	+	814.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86919.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	2.42	5.53	3.99	6.84	6.95	12.54	5.65	7.77	17.9	9.54	14.57	8.77
Merged-chr5-31298768-3	chr5	31298661	31298861	+	814.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144909, exon 3 of 19)	exon (NM_144909, exon 3 of 19)	1180.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	18.57	11.57	5.7	7.64	16.36	10.35	8.64	16.26	17.11	18.08	8.54	5.64
Merged-chr5-103715179-3	chr5	103715088	103715288	+	814.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-38974.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.63	16.85	12.55	6.03	7.36	5.96	1.33	5.47	17.31	15.06	14.57	10.65
Merged-chr2-163516609-3	chr2	163516505	163516705	+	814.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9748.0	NM_001312907	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	10.9	10.31	10.84	7.64	18.82	20.38	6.64	12.42	12.0	10.04	12.06	8.77
Merged-chr11-29810547-2	chr11	29810449	29810649	+	814.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	15119.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.46	5.53	4.56	7.24	6.95	8.78	3.32	7.21	12.98	9.54	17.59	6.89
Merged-chr10-60371756-3	chr10	60371638	60371838	+	814.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24887.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	10.9	4.53	13.69	18.5	23.73	8.78	13.62	16.46	8.85	7.53	10.05	5.95
Merged-chr3-103913481-3	chr3	103913370	103913570	+	814.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356556)	promoter-TSS (NM_001356556)	-650.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	16.56	13.83	13.69	8.45	17.18	13.8	6.98	19.18	13.77	12.55	13.57	10.65
Merged-chr15-81421708-3	chr15	81421591	81421791	+	814.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13418.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	11.71	14.09	13.12	10.05	10.64	13.8	1.66	7.46	9.24	8.54	4.02	5.64
Merged-chr9-106204636-3	chr9	106204494	106204694	+	814.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011876, intron 1 of 8)	intron (NM_011876, intron 1 of 8)	1486.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	8.48	5.79	7.99	5.23	4.09	13.8	3.65	4.15	13.37	9.54	17.59	10.34
Merged-chrX-53713159-3	chrX	53713043	53713243	+	814.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110489, intron 5 of 6)	intron (NR_110489, intron 5 of 6)	3435.0	NR_110489	331578.0	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	12.11	14.09	13.12	10.05	18.41	8.15	10.63	2.1	9.05	9.04	11.56	5.33
Merged-chr8-26980810-1	chr8	26980710	26980910	+	814.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3474.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.06	2.77	6.28	6.44	15.96	11.6	5.98	11.33	10.62	8.03	2.01	5.64
Merged-chr1-128593187-1	chr1	128593087	128593287	+	814.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-888.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.46	6.54	3.99	7.24	9.0	12.54	6.64	9.03	1.77	4.52	7.54	3.76
Merged-chrUn_JH584304-45655-1	chrUn_JH584304	45555	45755	+	814.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	14034.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.39	22.09	11.05	10.96
Merged-chr2-101472944-2	chr2	101472844	101473044	+	814.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-151804.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	1.62	6.79	4.56	5.63	10.64	11.6	9.97	13.99	14.55	11.55	16.08	2.51
Merged-chr6-84019325-3	chr6	84019206	84019406	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021469)	promoter-TSS (NM_021469)	-80.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	6.86	15.09	20.54	11.26	11.86	12.23	13.62	12.45	10.62	7.03	16.58	7.21
Merged-chr1-177463026-3	chr1	177462920	177463120	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	17199.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	5.65	16.1	18.25	16.09	3.27	8.15	6.64	10.29	8.85	9.04	11.05	7.52
Merged-chr11-20762224-3	chr11	20762121	20762321	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F3|LINE|L1	-20665.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	10.09	8.8	11.41	16.89	13.09	14.74	5.31	6.06	18.1	9.04	14.07	4.7
Merged-chr3-30993251-3	chr3	30993165	30993365	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2506.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	10.9	7.8	4.56	6.84	12.68	19.44	5.31	8.58	15.34	16.57	22.61	10.02
Merged-chrX-143063137-2	chrX	143063036	143063236	+	814.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-36458.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	12.52	8.3	5.7	4.42	10.64	12.54	15.61	19.07	12.78	13.56	19.6	6.58
Merged-chr8-3441805-2	chr8	3441736	3441936	+	814.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133962, intron 9 of 19)	intron (NM_133962, intron 9 of 19)	25812.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	11.71	14.34	6.28	10.46	2.45	8.15	4.32	4.46	4.92	6.53	14.07	7.52
Merged-chr8-123860098-2	chr8	123860024	123860224	+	814.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028536)	promoter-TSS (NM_028536)	85.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	7.27	13.33	10.84	6.84	7.36	6.27	11.96	8.89	5.7	3.01	6.03	4.39
Merged-chr7-45163935-2	chr7	45163838	45164038	+	814.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_182993)	promoter-TSS (NM_182993)	17.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	9.29	7.55	1.71	7.24	18.82	6.59	6.64	8.33	5.9	4.52	11.56	6.27
Merged-chr8-120536595-3	chr8	120536511	120536711	+	814.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	754.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	9.69	9.06	6.85	8.04	12.68	6.27	22.92	12.25	10.03	11.05	12.06	11.9
Merged-chr1-134560496-4	chr1	134560356	134560556	+	814.116699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_152895, exon 1 of 27)	exon (NM_152895, exon 1 of 27)	278.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	3.63	8.05	6.28	7.24	6.95	7.84	3.99	6.67	13.96	11.05	13.57	7.83
Merged-chr15-73034785-2	chr15	73034685	73034885	+	814.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	21027.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.81	3.27	6.28	8.85	10.23	8.78	4.98	6.39	12.59	7.53	22.61	7.52
Merged-chr5-120891273-2	chr5	120891168	120891368	+	814.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3655.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	7.27	5.28	9.13	5.23	13.09	13.48	3.65	10.43	9.05	15.06	14.57	5.01
Merged-chr10-17775327-3	chr10	17775247	17775447	+	814.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20872.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	8.48	6.29	3.42	12.47	13.09	3.45	8.64	9.93	18.29	21.59	31.66	9.08
Merged-chr17-13898049-3	chr17	13897966	13898166	+	814.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 31 of 33)	intron (NR_151731, intron 31 of 33)	-50307.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	3.23	6.04	11.41	13.27	14.32	10.03	15.61	20.36	4.92	7.53	16.58	13.78
Merged-chr11-89000837-5	chr11	89000692	89000892	+	814.023804	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	1389.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.67	8.3	6.85	11.66	7.77	10.35	8.3	6.79	11.41	14.06	17.08	10.02
Merged-chrX-145506054-2	chrX	145505965	145506165	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18426.0	NM_153319	27494.0	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	7.27	2.52	5.7	7.24	27.82	42.33	34.88	52.91	6.69	6.03	14.07	8.14
Merged-chr9-41185527-2	chr9	41185423	41185623	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20632.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	2.02	2.01	9.13	4.83	3.27	1.88	4.98	7.04	27.93	38.16	39.19	15.04
Merged-chr10-8135404-2	chr10	8135278	8135478	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179255.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	2.02	1.76	0.0	0.4	5.73	4.08	2.66	1.82	35.21	26.61	38.69	14.72
Merged-chr6-120567283-1	chr6	120567183	120567383	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12487.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	5.65	8.55	4.56	7.24	12.68	7.84	8.3	13.32	10.23	8.54	13.06	4.7
Merged-chr4-141994768-1	chr4	141994668	141994868	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	11776.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.81	4.02	6.85	4.42	13.09	3.76	1.99	5.94	5.11	4.52	2.51	3.45
Merged-chr16-17760115-2	chr16	17760024	17760224	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145479, intron 1 of 6)	CpG	503.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	10.9	10.31	9.7	3.22	9.0	9.09	5.31	7.79	16.52	10.04	11.05	5.64
Merged-chr5-148741840-2	chr5	148741722	148741922	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028285)	promoter-TSS (NR_028285)	-18.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	6.46	11.32	3.42	3.22	3.27	17.56	8.97	3.25	62.55	60.75	45.22	26.0
Merged-chr5-104048078-1	chr5	104047978	104048178	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_049192)	promoter-TSS (NR_049192)	75.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	7.27	2.01	4.56	5.23	4.5	8.47	2.66	9.08	2.95	5.52	4.52	5.95
Merged-chr10-121466649-3	chr10	121466558	121466758	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	9592.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.67	6.79	4.56	15.28	15.14	15.68	8.97	8.02	16.13	19.58	17.59	11.9
Merged-chr14-118564700-3	chr14	118564593	118564793	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	27779.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	10.09	8.55	8.56	10.05	4.91	13.8	13.95	17.8	9.83	11.55	13.06	8.14
Merged-chr4-32982920-1	chr4	32982820	32983020	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027491)	promoter-TSS (NM_027491)	-78.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	7.67	3.52	0.57	3.62	14.73	10.35	7.97	6.25	5.11	7.53	5.53	3.45
Merged-chr18-57355350-1	chr18	57355250	57355450	+	814.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028447, intron 1 of 8)	intron (NM_028447, intron 1 of 8)	617.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	9.29	6.04	11.41	13.67	21.27	16.31	17.61	19.01	13.96	15.57	12.06	10.34
Merged-chr3-15073578-1	chr3	15073478	15073678	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	102377.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.81	3.02	2.85	7.24	0.82	3.45	5.31	6.0	3.34	2.51	0.5	2.82
Merged-chr10-99273322-2	chr10	99273269	99273469	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10138.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	10.9	4.02	7.42	6.44	8.59	8.78	1.99	0.98	1.57	2.01	1.0	2.82
Merged-chr6-48083967-1	chr6	48083867	48084067	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362062, intron 1 of 5)	intron (NM_001362062, intron 1 of 5)	2626.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	1.62	2.01	6.85	5.63	7.77	11.92	5.65	13.63	1.77	5.52	4.02	6.27
Merged-chr5-130222956-2	chr5	130222867	130223067	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027854, intron 1 of 6)	B3A|SINE|B2	632.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	2.42	4.02	8.56	6.03	7.36	7.53	6.98	2.38	20.46	17.07	24.12	16.6
Merged-chr2-32966213-1	chr2	32966113	32966313	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	2912.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	1.62	3.02	5.13	0.0	10.23	5.33	6.64	7.32	10.03	6.53	3.01	3.45
Merged-chr5-113910760-1	chr5	113910660	113910860	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2054.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	3.23	2.52	4.56	0.8	7.36	5.02	7.97	9.22	5.7	2.51	9.55	3.13
Merged-chr1-34511200-3	chr1	34511105	34511305	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12793.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	12.52	10.31	9.7	10.05	9.41	8.78	12.29	12.67	12.98	10.54	20.1	12.22
Merged-chr5-63942304-1	chr5	63942204	63942404	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	26593.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	2.42	1.01	2.85	0.4	7.36	2.82	4.32	9.64	5.9	0.5	4.52	5.95
Merged-chr2-180711028-1	chr2	180710928	180711128	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289651, intron 1 of 4)	intron (NM_001289651, intron 1 of 4)	700.0	NM_001289651	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	3.23	3.77	3.42	4.83	3.27	3.14	6.98	6.11	4.33	2.51	2.01	4.39
Merged-chr7-130547835-1	chr7	130547735	130547935	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-454.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	8.88	3.27	3.42	3.62	10.64	6.9	1.33	8.69	7.47	6.53	5.02	6.89
Merged-chr8-83721832-1	chr8	83721732	83721932	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_197982, exon 6 of 11)	exon (NM_197982, exon 6 of 11)	2152.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	4.85	5.03	2.28	6.03	4.09	9.41	6.31	6.42	2.95	0.5	1.51	2.51
Merged-chr15-101221819-3	chr15	101221737	101221937	+	813.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045326, exon 3 of 3)	non-coding (NR_045326, exon 3 of 3)	590.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	12.11	10.82	3.99	12.87	15.96	13.8	6.31	4.09	8.26	5.52	11.56	6.89
Merged-chr18-55408948-2	chr18	55408841	55409041	+	813.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-416350.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	14.13	10.06	10.27	9.25	11.86	11.6	2.66	6.45	0.98	4.02	0.0	0.94
Merged-chr19-47508828-3	chr19	47508728	47508928	+	813.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4154.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	3.63	4.78	4.56	13.67	14.32	11.92	12.95	20.05	6.69	11.55	11.56	9.71
Merged-chr18-54544994-3	chr18	54544900	54545100	+	813.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66744.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	10.09	12.07	18.25	19.31	11.05	12.86	10.96	17.89	9.64	9.04	16.58	4.39
Merged-chr14-31194074-3	chr14	31193968	31194168	+	813.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	12758.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	9.69	6.04	5.13	14.08	20.05	16.93	13.95	16.4	16.72	18.08	11.05	13.16
Merged-chr11-75566032-2	chr11	75565920	75566120	+	813.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	14591.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	4.44	8.05	0.57	9.25	13.09	4.08	13.29	14.22	8.06	5.52	14.57	5.64
Merged-chr4-3710574-3	chr4	3710400	3710600	+	813.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-4464.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	6.06	2.52	9.13	2.82	6.55	6.59	16.28	14.64	10.23	7.53	11.56	5.95
Merged-chr15-76195856-3	chr15	76195764	76195964	+	813.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-154.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	8.48	6.04	7.99	7.24	18.41	9.41	6.98	16.74	16.52	13.05	16.08	12.84
Merged-chr5-43872813-3	chr5	43872705	43872905	+	813.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	MLT1H-int|LTR|ERVL-MaLR	3996.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.86	5.28	7.99	10.46	21.27	23.2	17.27	20.36	19.67	22.59	17.59	10.34
Merged-chr12-80885501-2	chr12	80885403	80885603	+	813.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38944.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	6.86	10.56	5.7	4.83	6.95	18.19	13.62	4.74	17.7	13.56	9.04	8.46
Merged-chr19-58979993-3	chr19	58979866	58980066	+	813.8618769999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-36294.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	6.46	10.82	11.41	11.26	8.59	10.98	4.98	4.71	14.36	7.53	8.54	7.52
Merged-chr16-91441646-2	chr16	91441550	91441750	+	813.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-23454.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	4.44	2.52	10.27	4.83	4.5	10.35	4.32	10.88	15.54	13.05	17.59	12.53
Merged-chr5-130454024-2	chr5	130453917	130454117	+	813.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5225.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	9.29	5.03	7.42	6.84	14.73	3.14	3.32	9.98	9.24	8.54	19.09	5.95
Merged-chr12-44908229-2	chr12	44908122	44908322	+	813.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	166261.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	5.65	4.02	10.27	6.44	5.73	7.21	7.64	13.29	12.39	18.08	28.64	9.4
Merged-chr6-119358336-2	chr6	119358226	119358426	+	813.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355692, intron 6 of 7)	intron (NM_001355692, intron 6 of 7)	-27560.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	9.69	2.52	10.84	4.02	12.68	5.96	15.61	20.8	8.06	9.54	6.53	7.21
Merged-chr11-110244899-2	chr11	110244809	110245009	+	813.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166557, intron 5 of 6)	MLT1A1|LTR|ERVL-MaLR	6867.0	NM_147218	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	12.92	8.05	12.55	9.65	24.14	10.98	21.26	12.87	6.29	13.05	10.55	7.21
Merged-chr6-55017140-3	chr6	55017057	55017257	+	813.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20844.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	11.71	8.05	6.85	14.48	24.14	11.92	6.64	12.34	13.18	11.05	18.09	7.21
Merged-chr8-79037807-1	chr8	79037707	79037907	+	813.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9370.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	6.86	4.28	2.28	3.62	7.77	9.72	8.3	14.92	9.83	5.52	7.03	1.88
Merged-chr2-128714553-1	chr2	128714453	128714653	+	813.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15638.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.27	6.79	8.56	4.83	7.77	9.41	6.98	12.87	7.67	5.52	15.58	13.47
Merged-chr15-76199468-3	chr15	76199366	76199566	+	813.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201392)	promoter-TSS (NM_201392)	-60.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	8.08	8.55	4.56	11.66	8.59	20.07	10.96	9.95	16.92	15.57	14.07	10.65
Merged-chr6-121251399-3	chr6	121251309	121251509	+	813.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	5503.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	10.09	14.59	14.83	4.83	5.73	14.11	6.64	12.59	23.01	18.08	14.57	6.89
Merged-chr8-46889958-1	chr8	46889858	46890058	+	813.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96929.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	2.42	5.79	4.56	2.01	7.36	6.27	10.3	11.1	5.31	8.03	7.54	7.52
Merged-chr19-17217372-2	chr19	17217277	17217477	+	813.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	122128.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	7.27	6.79	13.69	8.85	10.64	14.11	10.63	11.83	4.13	0.5	3.52	1.25
Merged-chr10-81305030-3	chr10	81304929	81305129	+	813.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 2 of 17)	intron (NM_001293647, intron 2 of 17)	12066.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	12.11	13.58	5.7	12.07	10.23	7.84	4.98	12.06	22.82	26.61	11.56	9.08
Merged-chr3-149101241-3	chr3	149101138	149101338	+	813.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146603.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	10.09	10.06	11.41	20.11	12.68	14.42	12.29	14.86	9.64	14.06	7.03	3.13
Merged-chr10-56174010-3	chr10	56173926	56174126	+	813.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	54663.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	4.44	4.02	12.55	8.04	5.32	4.39	11.63	18.14	7.47	8.54	16.58	9.4
Merged-chr7-123366121-6	chr7	123365906	123366106	+	813.772217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3909.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	8.08	8.05	7.42	9.25	15.96	9.72	6.31	8.44	12.39	10.54	10.55	4.7
Merged-chr3-69223746-1	chr3	69223646	69223846	+	813.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027843)	TTS (NM_027843)	1327.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	8.08	4.53	5.7	4.83	6.55	9.41	7.31	7.09	15.54	7.03	9.04	5.01
Merged-chr13-55437406-2	chr13	55437314	55437514	+	813.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	-7658.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	2.02	6.54	10.27	4.83	6.95	13.48	10.96	6.25	15.34	11.55	11.56	19.42
Merged-chr13-59975990-1	chr13	59975890	59976090	+	813.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53721.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.0	1.51	0.0	0.0	10.64	5.33	8.64	12.7	3.15	3.01	4.52	1.25
Merged-chr4-58304054-2	chr4	58303952	58304152	+	813.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18090.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	11.31	8.8	15.97	9.65	13.09	9.09	16.94	21.95	0.79	2.01	1.0	0.63
Merged-chr11-118254338-3	chr11	118254248	118254448	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5756.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	14.94	6.79	6.85	10.05	11.86	7.53	8.97	5.69	13.96	7.03	15.07	10.02
Merged-chr17-57338224-3	chr17	57338128	57338328	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20458.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	14.94	11.32	8.56	8.45	13.5	11.29	6.64	13.43	17.7	16.07	14.07	10.02
Merged-chr7-63822169-3	chr7	63822092	63822292	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94665.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.48	3.77	11.98	9.25	11.45	15.99	10.96	19.29	7.28	17.07	26.13	12.84
Merged-chr11-121848077-3	chr11	121847976	121848176	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17858.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	7.27	8.05	6.28	14.88	5.32	8.47	6.64	11.41	20.46	19.58	37.18	14.72
Merged-chr7-105581377-3	chr7	105581275	105581475	+	813.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001253886, exon 1 of 14)	5' UTR (NM_001253886, exon 1 of 14)	116.0	NM_001253885	11785.0	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	8.88	6.29	24.53	17.29	12.68	4.7	13.95	10.63	5.51	9.54	10.05	10.02
Merged-chr8-46340990-3	chr8	46340853	46341053	+	813.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46282.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	4.44	11.82	4.56	10.86	5.32	6.9	8.3	13.29	16.52	6.53	9.04	18.8
Merged-chr3-79253162-3	chr3	79253044	79253244	+	813.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40225.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.44	3.27	11.41	3.22	9.0	7.53	7.31	9.03	19.87	14.06	10.55	15.98
Merged-chr10-78139861-3	chr10	78139741	78139941	+	813.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29927.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	12.92	24.15	20.54	8.85	18.82	48.92	24.25	14.89	18.69	9.54	19.09	6.89
Merged-chr19-5072117-3	chr19	5072001	5072201	+	813.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4023.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	8.48	11.32	15.4	9.65	22.09	28.85	26.57	14.52	20.26	14.56	12.56	10.02
Merged-chr8-80793947-1	chr8	80793847	80794047	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021356, intron 2 of 9)	intron (NM_021356, intron 2 of 9)	-54488.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	2.42	3.27	7.99	7.24	5.73	6.27	6.31	7.99	6.1	1.0	6.53	3.13
Merged-chr18-4337290-1	chr18	4337190	4337390	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	15663.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.06	2.26	5.7	2.82	10.23	3.45	7.31	8.19	11.8	4.02	6.03	1.88
Merged-chr16-73646483-3	chr16	73646383	73646583	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	695584.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	10.9	5.03	5.7	10.46	14.32	14.42	16.61	14.07	12.39	18.58	25.12	6.89
Merged-chr12-87416836-3	chr12	87416729	87416929	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20928.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	8.88	9.31	8.56	11.66	14.73	20.38	14.28	9.79	10.82	9.04	18.09	5.64
Merged-chr9-45197248-3	chr9	45197139	45197339	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1473.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	28.27	28.67	13.12	14.08	11.86	38.26	19.93	11.19	18.88	8.54	16.58	4.39
Merged-chr2-73004508-3	chr2	73004383	73004583	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24037.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.27	5.53	9.13	10.05	11.05	20.07	28.9	11.97	6.88	10.04	11.05	5.95
Merged-chr9-65741142-1	chr9	65741042	65741242	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64594.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	6.46	6.04	11.41	9.65	10.64	12.23	6.98	13.88	0.39	1.51	1.51	0.0
Merged-chrX-140511236-3	chrX	140511138	140511338	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31430.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	10.5	6.54	5.7	11.66	21.27	14.42	23.92	22.35	6.49	12.05	18.59	6.89
Merged-chr8-19563330-1	chr8	19563230	19563430	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68233.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.4	1.01	4.56	10.46	6.14	6.59	8.97	10.46	3.54	4.02	6.03	1.25
Merged-chr14-103920371-3	chr14	103920272	103920472	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75896.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	11.31	8.05	9.13	16.89	15.14	21.01	18.27	27.62	13.77	18.58	27.64	9.4
Merged-chr14-7858545-1	chr14	7858445	7858645	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	40588.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.81	5.03	1.14	2.01	4.09	12.54	5.98	6.48	5.11	5.02	9.04	6.58
Merged-chr12-3744192-1	chr12	3744092	3744292	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-62788.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.08	3.27	2.28	5.23	4.09	10.03	6.64	8.41	4.52	3.01	5.53	1.25
Merged-chr6-124316160-1	chr6	124316060	124316260	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 6 of 16)	intron (NM_001170395, intron 6 of 16)	11509.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.25	3.02	9.13	6.44	6.55	7.21	7.64	9.03	8.46	4.02	6.03	4.7
Merged-chr11-63898912-3	chr11	63898789	63898989	+	813.6444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	23395.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	6.06	18.36	13.12	24.53	8.18	9.41	7.97	9.08	19.47	9.54	17.59	10.34
Merged-chr5-123661774-2	chr5	123661672	123661872	+	813.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	PB1D7|SINE|Alu	22589.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	5.65	7.55	3.42	4.83	15.96	20.38	13.29	8.47	10.62	13.05	6.53	7.52
Merged-chr10-121494048-4	chr10	121493930	121494130	+	813.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17780.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.27	6.79	10.84	6.84	21.27	10.66	18.6	20.02	18.1	13.56	28.64	29.13
Merged-chr16-21689349-3	chr16	21689247	21689447	+	813.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	5318.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.46	6.54	18.25	9.25	20.05	20.38	28.57	22.04	27.14	23.1	16.08	14.41
Merged-chr3-37728298-3	chr3	37728179	37728379	+	813.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3919.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	16.96	10.56	20.54	16.49	11.86	8.15	5.65	9.45	7.47	11.55	12.56	4.07
Merged-chr13-30566969-3	chr13	30566871	30567071	+	813.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21655.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	7.27	7.29	6.28	9.65	11.86	5.02	1.33	10.26	10.42	6.53	18.59	12.22
Merged-chr5-105685078-3	chr5	105684985	105685185	+	813.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14884.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.27	9.06	5.7	2.82	18.82	21.95	14.62	15.7	23.8	25.11	11.05	10.65
Merged-chr1-51915838-2	chr1	51915695	51915895	+	813.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001161817, exon 1 of 31)	5' UTR (NM_001161817, exon 1 of 31)	183.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.46	12.07	9.7	10.86	10.64	15.68	9.63	7.32	6.69	6.53	9.55	4.39
Merged-chr7-81868258-2	chr7	81868162	81868362	+	813.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291282, intron 3 of 9)	intron (NM_001291282, intron 3 of 9)	5575.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.44	6.79	6.85	7.64	6.95	6.27	1.99	9.2	14.16	4.52	15.07	7.52
Merged-chr15-96476561-2	chr15	96476479	96476679	+	813.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15736.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	5.25	5.79	7.99	4.02	12.68	12.86	6.64	11.1	14.75	15.06	18.09	14.41
Merged-chr11-97801189-3	chr11	97801095	97801295	+	813.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	1630.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	13.73	6.54	12.55	3.22	11.05	6.27	7.64	7.99	17.11	14.06	9.04	3.45
Merged-chr2-52982728-3	chr2	52982618	52982818	+	813.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	(T)n|Simple_repeat|Simple_repeat	124850.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	16.96	21.13	13.69	8.85	8.59	14.11	12.95	12.28	11.8	14.56	17.59	9.4
Merged-chr6-72438025-4	chr6	72437974	72438174	+	813.5625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046011)	promoter-TSS (NR_046011)	-609.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	8.08	6.79	8.56	11.66	2.45	2.82	6.64	4.85	8.65	8.03	12.06	7.21
Merged-chr15-39606685-3	chr15	39606582	39606782	+	813.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-52829.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	2.83	10.56	2.28	8.45	9.82	9.09	13.29	25.6	13.37	14.06	27.64	24.43
Merged-chr17-29006999-2	chr17	29006899	29007099	+	813.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	996.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	6.06	5.53	6.85	5.63	11.86	6.27	3.65	10.18	11.41	4.02	9.04	12.53
Merged-chr2-120446594-2	chr2	120446495	120446695	+	813.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172672, intron 17 of 23)	intron (NM_172672, intron 17 of 23)	-16998.0	NM_001177799	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	8.88	11.07	9.7	13.67	9.82	9.09	15.61	20.83	5.9	11.05	13.57	14.72
Merged-chr10-44448273-3	chr10	44448177	44448377	+	813.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	10471.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	13.33	9.31	6.85	8.85	13.5	7.84	9.3	15.06	19.08	12.55	9.55	10.65
Merged-chr15-27673250-3	chr15	27673129	27673329	+	813.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	8313.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	8.88	8.3	3.42	13.27	16.36	17.56	5.65	12.25	7.87	4.52	9.04	8.77
Merged-chr5-28003971-3	chr5	28003864	28004064	+	813.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-67448.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	19.38	7.55	9.7	20.11	25.36	21.64	41.85	39.39	10.82	9.54	9.04	11.59
Merged-chr6-89455595-2	chr6	89455536	89455736	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-93023.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	6.06	8.3	11.98	10.05	2.05	2.82	9.3	8.27	4.13	7.03	3.52	3.45
Merged-chr16-30596397-2	chr16	30596315	30596515	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-3308.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.25	7.8	2.85	5.23	12.68	10.98	12.95	8.47	13.18	9.54	7.03	9.71
Merged-chr10-122047217-1	chr10	122047117	122047317	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	98.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	4.85	3.52	3.42	8.45	6.55	7.53	6.31	7.23	6.49	9.54	10.05	8.77
Merged-chr1-64243356-2	chr1	64243254	64243454	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-121965.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.65	1.51	4.56	4.02	1.64	2.82	6.31	7.32	9.44	2.51	10.05	3.13
Merged-chr9-94275174-2	chr9	94275062	94275262	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	262919.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	7.27	3.02	2.28	8.45	6.95	4.39	1.33	7.26	19.47	7.03	19.09	9.71
Merged-chr2-160619502-2	chr2	160619421	160619621	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26376.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.04	11.57	4.56	4.02	6.14	13.48	8.64	6.11	8.06	1.51	13.06	12.53
Merged-chr1-176849036-4	chr1	176848907	176849107	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-12874.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	7.27	3.02	0.0	6.84	5.32	0.63	1.0	4.6	6.49	3.51	4.52	7.83
Merged-chr1-60609598-1	chr1	60609498	60609698	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42833.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	4.04	4.53	10.84	17.29	11.45	6.27	2.66	20.5	4.13	8.03	8.54	4.07
Merged-chr13-47151255-1	chr13	47151155	47151355	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	BLACKJACK|DNA|hAT-Blackjack	-2585.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	0.4	2.52	0.0	0.8	5.73	1.88	11.29	10.12	0.0	0.0	1.0	0.0
Merged-chr9-111055100-2	chr9	111054982	111055182	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302376, exon 3 of 3)	3' UTR (NM_001302376, exon 3 of 3)	2162.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.48	11.57	2.28	0.8	11.86	11.29	4.65	4.29	10.03	4.02	4.02	0.31
Merged-chrX-85863192-1	chrX	85863092	85863292	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7081.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	3.23	5.03	6.85	3.22	6.55	2.51	7.97	12.48	5.31	2.51	10.05	5.95
Merged-chr8-22708720-2	chr8	22708619	22708819	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-2136.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	3.63	3.52	10.84	16.49	14.73	12.54	3.99	9.2	12.78	8.03	8.04	1.57
Merged-chr18-4634964-3	chr18	4634924	4635124	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081963)	promoter-TSS (NM_001081963)	95.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	6.86	5.03	4.56	6.84	7.77	11.29	16.28	10.29	8.26	8.03	4.52	8.14
Merged-chr11-86625597-1	chr11	86625497	86625697	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-41439.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	2.02	7.29	2.28	2.82	6.55	7.84	4.98	8.66	11.21	2.51	8.54	4.07
Merged-chr17-73038671-3	chr17	73038515	73038715	+	813.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-69370.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.25	2.77	9.13	1.21	9.41	4.08	11.29	9.56	11.01	6.53	11.05	8.77
Merged-chr15-103183406-3	chr15	103183305	103183505	+	813.438904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20121.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	9.29	15.34	15.97	6.44	12.68	18.5	8.3	9.14	12.19	8.03	15.58	9.08
Merged-chr8-71612030-3	chr8	71611926	71612126	+	813.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146211, intron 1 of 11)	intron (NM_146211, intron 1 of 11)	1002.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	8.88	8.55	6.28	4.02	6.14	10.98	6.98	5.33	16.72	12.05	5.53	6.27
Merged-chr7-55707008-2	chr7	55706914	55707114	+	813.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61170.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	10.09	5.03	10.27	9.65	10.23	13.48	17.27	30.67	4.13	7.03	6.53	8.77
Merged-chr2-33427234-3	chr2	33427134	33427334	+	813.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276332, intron 1 of 1)	MIRb|SINE|MIR	4090.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	11.71	13.83	19.4	13.67	23.73	17.87	9.97	16.09	13.77	9.54	15.07	12.84
Merged-chr2-14224556-3	chr2	14224445	14224645	+	813.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-4869.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	11.31	9.06	6.85	18.1	14.73	12.54	11.63	18.03	12.39	7.53	13.57	4.7
Merged-chr15-75873821-3	chr15	75873720	75873920	+	813.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	11481.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	13.33	6.54	19.4	8.85	11.86	16.93	7.64	2.33	15.34	19.58	6.53	4.7
Merged-chr14-103011895-2	chr14	103011723	103011923	+	813.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	L1MA6|LINE|L1	21980.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.4	4.53	1.14	5.23	6.95	2.2	1.66	1.07	8.46	8.03	6.53	2.82
Merged-chr12-102414633-2	chr12	102414530	102414730	+	813.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	25183.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.65	1.26	18.25	12.87	11.86	6.59	16.61	19.43	5.31	2.01	3.01	7.21
Merged-chr3-152913136-4	chr3	152913106	152913306	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69001.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.04	5.03	10.84	2.41	6.55	3.76	4.98	9.53	11.21	10.04	9.04	11.9
Merged-chr15-58750229-3	chr15	58750114	58750314	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73213.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	10.5	7.55	7.42	16.89	8.18	3.76	13.62	8.69	8.65	8.03	22.11	10.65
Merged-chr4-81694632-3	chr4	81694567	81694767	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207654.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	3.23	3.77	9.13	3.62	5.73	5.02	4.98	8.55	1.77	1.51	5.53	2.82
Merged-chr3-95986510-3	chr3	95986408	95986608	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045872, exon 3 of 3)	non-coding (NR_045872, exon 3 of 3)	998.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	11.31	9.56	5.7	11.26	16.77	19.44	8.97	4.01	24.59	29.12	25.63	11.9
Merged-chr9-38719135-3	chr9	38719008	38719208	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	840.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	4.85	6.29	6.28	6.03	4.5	4.7	9.97	6.17	5.51	11.05	5.02	7.83
Merged-chr19-7581297-3	chr19	7581199	7581399	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362425, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	23814.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	8.08	13.83	15.4	11.26	12.27	16.31	13.95	12.42	7.47	6.03	8.54	7.52
Merged-chr9-120068905-1	chr9	120068805	120069005	+	813.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-609.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.65	5.03	18.83	9.65	8.18	11.92	4.65	7.21	5.51	4.52	5.02	3.76
Merged-chr18-79995828-3	chr18	79995712	79995912	+	813.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-51083.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	1.21	9.06	10.27	6.84	22.09	10.66	13.62	10.21	20.46	17.57	16.58	10.02
Merged-chr5-114897542-3	chr5	114897471	114897671	+	813.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011854, exon 1 of 6)	5' UTR (NM_011854, exon 1 of 6)	637.0	NM_001359181	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	10.9	8.8	14.26	14.08	7.77	9.72	6.98	6.7	9.05	22.09	11.56	10.96
Merged-chr16-95703380-2	chr16	95703299	95703499	+	813.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	992.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	12.92	8.55	7.42	10.86	9.41	16.93	10.3	6.45	12.59	18.58	15.58	6.27
Merged-chr3-109335680-3	chr3	109335592	109335792	+	813.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4991.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	18.98	8.55	11.98	12.87	10.64	15.68	8.3	26.5	22.82	11.55	20.6	20.05
Merged-chr17-64201822-3	chr17	64201730	64201930	+	813.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130053.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	10.09	9.06	14.26	11.66	8.18	6.27	12.62	23.24	15.34	9.54	24.12	14.41
Merged-chr15-100664137-3	chr15	100664032	100664232	+	813.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5368.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	14.54	7.8	13.69	0.8	7.36	16.93	11.96	10.29	9.24	13.05	11.56	4.7
Merged-chr1-162739514-3	chr1	162739414	162739614	+	813.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1042.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	8.08	12.32	10.84	16.09	15.96	35.12	8.3	10.74	28.13	25.11	23.11	9.08
Merged-chr9-22322483-1	chr9	22322383	22322583	+	813.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8207.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	2.42	1.76	5.7	4.42	5.73	3.14	5.65	1.29	15.93	12.05	10.05	9.4
Merged-chr5-90661643-3	chr5	90661532	90661732	+	813.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-21105.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	12.92	6.79	14.26	8.45	15.14	11.92	12.95	14.72	16.92	10.54	24.62	9.08
Merged-chr9-119093600-3	chr9	119093472	119093672	+	813.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_121571)	promoter-TSS (NR_121571)	-70.0	NM_019676	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	12.92	5.03	4.56	7.64	15.55	14.74	11.63	16.23	10.42	11.05	14.07	8.14
Merged-chr8-24437934-2	chr8	24437830	24438030	+	813.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	1016.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.85	10.56	8.56	4.02	13.91	9.72	7.64	10.93	12.39	11.55	10.55	6.27
Merged-chr12-55652939-2	chr12	55652839	55653039	+	813.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	54022.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	9.29	3.27	19.4	15.28	13.09	14.11	12.29	23.38	10.03	3.01	9.04	11.59
Merged-chr2-72286555-2	chr2	72286446	72286646	+	813.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	845.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	13.73	8.3	26.24	8.45	15.96	11.92	11.63	13.93	8.85	5.52	7.03	4.7
Merged-chr16-45738110-3	chr16	45738007	45738207	+	813.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073572, intron 1 of 4)	intron (NR_073572, intron 1 of 4)	4848.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	6.06	8.3	10.84	13.67	9.41	14.74	12.62	20.83	9.64	4.02	15.07	6.89
Merged-chr6-33884316-2	chr6	33884207	33884407	+	813.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-145141.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.23	3.77	6.28	11.66	5.73	15.37	9.97	15.64	8.65	14.56	14.57	9.08
Merged-chr15-76817040-3	chr15	76816870	76817070	+	813.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1200.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	8.48	5.03	7.42	8.04	9.41	7.21	5.31	7.88	9.83	4.52	9.04	4.07
Merged-chr17-35059778-3	chr17	35059657	35059857	+	813.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016765, intron 1 of 6)	intron (NM_016765, intron 1 of 6)	722.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	14.94	9.31	16.54	8.85	13.5	15.68	5.65	5.8	25.96	17.07	15.07	9.71
Merged-chr3-65396981-2	chr3	65396872	65397072	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4419.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	8.08	5.79	4.56	7.64	5.32	4.08	5.31	9.31	17.11	6.03	16.58	5.01
Merged-chr12-85575018-3	chr12	85574920	85575120	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24085.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.06	6.54	9.13	10.86	5.73	12.86	4.98	18.56	9.05	17.57	18.09	8.77
Merged-chr6-22122236-1	chr6	22122136	22122336	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081351, intron 8 of 21)	intron (NM_001081351, intron 8 of 21)	136326.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	8.08	2.01	2.28	1.61	4.91	8.15	4.32	7.32	3.15	6.03	1.51	3.45
Merged-chr1-54921768-1	chr1	54921668	54921868	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	4619.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	1.62	7.04	4.56	6.03	10.23	3.76	2.66	8.94	4.52	7.03	8.04	3.76
Merged-chrX-140534528-1	chrX	140534428	140534628	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8140.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	12.92	4.28	2.28	4.02	7.77	6.27	8.64	11.33	7.67	3.51	7.03	1.25
Merged-chr14-78815654-2	chr14	78815515	78815715	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33563.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	1.62	2.77	13.12	10.86	7.36	4.7	11.29	8.55	0.98	0.0	0.0	0.63
Merged-chr18-5616850-1	chr18	5616750	5616950	+	813.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	L1MA8|LINE|L1	24203.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.83	1.01	6.85	10.46	2.45	2.82	3.99	12.39	11.01	2.51	13.57	5.64
Merged-chr18-65534184-1	chr18	65534084	65534284	+	813.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-46046.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	1.62	1.26	2.28	2.41	1.64	1.25	0.66	4.04	3.15	5.52	14.07	3.45
Merged-chr4-130798535-1	chr4	130798435	130798635	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5998.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	1.62	3.52	2.85	4.02	1.64	8.47	2.66	5.83	6.69	3.01	7.03	7.21
Merged-chr9-62360867-3	chr9	62360772	62360972	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	19529.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	10.5	4.78	4.56	8.85	12.27	10.66	6.64	10.32	10.82	8.03	6.03	7.52
Merged-chr19-55934836-2	chr19	55934751	55934951	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39530.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	9.69	5.03	1.14	3.22	4.09	4.08	12.95	3.06	3.54	4.52	3.01	3.76
Merged-chr9-118696313-1	chr9	118696213	118696413	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-15379.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.83	2.01	4.56	0.8	4.5	2.2	10.3	8.72	1.97	4.02	2.01	7.52
Merged-chr12-108793766-1	chr12	108793666	108793866	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009537, exon 1 of 5)	exon (NM_009537, exon 1 of 5)	455.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.48	11.82	7.99	8.04	3.68	11.6	1.66	5.72	5.9	8.03	5.53	10.02
Merged-chr3-90016863-1	chr3	90016763	90016963	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165987, intron 17 of 24)	intron (NM_001165987, intron 17 of 24)	-5653.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	3.63	5.53	6.85	4.83	13.91	9.09	1.66	8.3	8.06	3.51	4.02	3.45
Merged-chr19-32255125-1	chr19	32255025	32255225	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-44112.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.85	0.5	5.7	4.02	8.59	6.9	11.29	16.57	4.72	3.51	3.52	2.51
Merged-chr4-66826493-2	chr4	66826387	66826587	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1064.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.04	3.02	5.7	6.84	13.5	11.6	2.99	11.36	14.55	8.54	12.06	6.58
Merged-chr15-95962640-1	chr15	95962540	95962740	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 17 of 19)	intron (NM_175344, intron 17 of 19)	116913.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	5.25	2.77	21.11	4.02	10.64	6.9	3.32	12.48	5.7	2.51	8.54	10.02
Merged-chr10-67585087-2	chr10	67584986	67585186	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-13127.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.08	3.27	5.13	4.42	4.5	8.47	5.65	11.44	8.85	7.53	12.56	4.39
Merged-chrX-60387110-1	chrX	60387010	60387210	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	7382.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	2.83	1.26	1.71	8.45	5.73	9.09	10.63	8.52	5.7	6.53	4.52	2.51
Merged-chr15-38672461-1	chr15	38672361	38672561	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	10557.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.85	3.02	5.7	1.21	8.18	5.96	3.99	8.69	6.29	2.51	9.55	2.82
Merged-chr11-4118768-2	chr11	4118647	4118847	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144520)	promoter-TSS (NM_144520)	-18.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	4.44	5.79	2.85	0.4	6.55	5.02	2.33	3.0	4.33	7.53	7.54	4.7
Merged-chr9-43239907-2	chr9	43239764	43239964	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178644)	promoter-TSS (NM_178644)	-48.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	8.88	1.76	3.99	6.84	13.09	8.47	3.32	7.71	2.75	6.03	10.55	4.7
Merged-chr1-60658642-1	chr1	60658542	60658742	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87746.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	6.46	8.05	3.42	2.82	9.41	7.53	11.96	11.92	8.06	4.52	4.02	4.07
Merged-chr7-132237777-1	chr7	132237677	132237877	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-77887.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.63	5.03	1.14	4.83	4.91	6.27	9.63	15.59	3.34	4.02	5.53	5.33
Merged-chr8-90954917-3	chr8	90954839	90955039	+	812.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	22690.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.88	13.83	5.13	15.28	7.36	16.31	7.31	12.64	11.21	14.06	26.13	5.33
Merged-chr7-89342155-3	chr7	89342059	89342259	+	812.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	ORR1C2|LTR|ERVL-MaLR	-3372.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.06	10.82	11.41	10.86	5.73	21.95	14.28	10.57	14.75	3.51	7.54	3.45
Merged-chr3-100932401-2	chr3	100932287	100932487	+	812.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001165953, exon 7 of 7)	3' UTR (NM_001165953, exon 7 of 7)	9894.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	6.06	3.77	6.85	4.83	15.96	7.21	9.63	9.53	14.36	15.57	12.06	9.71
Merged-chr2-3050254-3	chr2	3050151	3050351	+	812.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-63973.0	NM_001310434	269233.0	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	12.11	15.59	7.99	19.71	6.55	3.45	14.62	9.14	13.57	13.05	12.06	11.59
Merged-chr13-109343741-3	chr13	109343647	109343847	+	812.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	19003.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	9.29	14.34	13.12	12.47	22.5	11.6	21.26	25.46	15.34	11.05	24.12	11.28
Merged-chr12-55465718-3	chr12	55465626	55465826	+	812.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26921.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	11.71	8.3	2.85	9.25	13.09	13.48	9.97	11.36	16.13	9.54	6.53	9.71
Merged-chr9-47628744-3	chr9	47628655	47628855	+	812.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	98403.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	14.13	13.58	7.42	8.04	21.27	15.05	6.31	7.63	13.18	9.54	12.56	5.01
Merged-chr4-6445274-3	chr4	6445177	6445377	+	812.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	8994.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	14.13	9.06	6.28	12.47	4.91	7.21	2.99	7.01	13.18	13.05	9.55	5.01
Merged-chr1-33901889-3	chr1	33901791	33901991	+	812.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	Lx9|LINE|L1	5730.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	20.19	7.8	22.82	15.28	13.91	15.05	9.97	10.15	19.87	14.06	19.6	6.89
Merged-chr7-100520893-3	chr7	100520788	100520988	+	812.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6073.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	14.54	11.82	7.99	9.65	12.68	12.23	4.32	5.1	21.05	25.61	20.6	12.84
Merged-chr15-79933942-3	chr15	79933849	79934049	+	812.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1303.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	9.69	8.55	17.11	2.01	8.18	13.17	4.98	7.01	14.55	19.58	12.06	14.1
Merged-chr13-52194633-3	chr13	52194523	52194723	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	97882.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	8.88	9.31	13.69	15.28	10.23	2.2	14.62	9.25	2.36	5.02	13.57	12.22
Merged-chr9-15126187-1	chr9	15126087	15126287	+	812.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-14079.0	NM_001164797	244698.0	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	7.67	2.52	13.69	6.03	10.64	9.41	6.31	10.29	5.31	4.02	6.03	3.13
Merged-chr18-46465458-3	chr18	46465349	46465549	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045438, exon 1 of 1)	non-coding (NR_045438, exon 1 of 1)	367.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	5.65	10.31	9.13	5.23	10.64	10.98	10.96	10.43	4.92	14.06	11.05	6.58
Merged-chr16-25022750-3	chr16	25022653	25022853	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	10.5	3.77	11.41	10.46	13.5	10.35	19.6	26.64	13.96	10.04	22.11	8.46
Merged-chr4-15289077-3	chr4	15288993	15289193	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23273.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	12.92	16.1	14.26	10.46	5.32	18.19	5.98	5.69	12.78	16.07	13.57	2.51
Merged-chr13-98027967-1	chr13	98027867	98028067	+	812.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	178198.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.81	2.52	0.57	2.82	11.05	4.7	13.29	4.71	0.59	0.5	0.0	1.88
Merged-chr2-27680705-2	chr2	27680597	27680797	+	812.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3496.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	8.88	5.03	9.13	4.02	9.41	6.27	5.98	10.35	10.62	9.54	8.54	8.14
Merged-chr5-121923638-1	chr5	121923538	121923738	+	812.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 3 of 22)	ID_B1|SINE|B4	74641.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	7.27	5.53	10.27	7.24	7.36	8.15	4.32	12.2	0.59	2.01	8.04	1.57
Merged-chr11-63955187-1	chr11	63955087	63955287	+	812.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9039.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	1.62	0.0	0.0	0.8	12.27	12.54	16.61	5.78	0.0	3.01	0.0	1.57
Merged-chrX-152172582-3	chrX	152172499	152172699	+	812.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114664, intron 2 of 14)	intron (NM_001114664, intron 2 of 14)	-6410.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	4.85	11.07	6.28	10.05	12.27	6.27	14.62	17.27	12.98	12.55	15.07	13.78
Merged-chr19-43723642-3	chr19	43723546	43723746	+	812.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 9 of 12)	(TG)n|Simple_repeat|Simple_repeat	29354.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	7.27	11.07	7.42	9.65	10.23	10.98	7.64	10.6	21.05	6.03	29.65	12.84
Merged-chr9-86583906-3	chr9	86583792	86583992	+	812.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008615, intron 13 of 13)	intron (NM_008615, intron 13 of 13)	11839.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	8.08	7.29	10.27	9.25	13.91	10.98	8.3	18.56	18.29	17.57	15.07	11.9
Merged-chr5-127607768-3	chr5	127607651	127607851	+	812.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	9641.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	8.48	11.82	9.13	11.66	18.0	8.47	23.25	24.53	12.0	6.03	11.56	5.33
Merged-chr15-78369106-2	chr15	78369005	78369205	+	812.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19664.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	7.27	9.81	5.13	1.21	22.91	13.17	7.97	12.59	11.21	9.54	11.56	5.95
Merged-chr1-20454862-1	chr1	20454762	20454962	+	812.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	98408.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	2.02	0.5	0.0	2.41	8.59	7.84	4.65	14.3	0.98	8.03	6.53	2.51
Merged-chr11-46106045-3	chr11	46105945	46106145	+	812.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 5 of 22)	intron (NM_001291890, intron 5 of 22)	3775.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	8.88	11.32	13.69	4.83	4.91	10.98	5.31	5.05	44.84	39.67	50.75	17.86
Merged-chr18-68935260-1	chr18	68935160	68935360	+	812.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	16268.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	7.67	3.77	6.85	4.42	12.27	8.15	2.99	14.72	0.0	3.51	0.5	0.94
Merged-chr11-62556381-1	chr11	62556281	62556481	+	812.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	4650.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.81	3.02	5.13	2.82	2.05	8.15	3.32	1.74	2.56	2.01	4.52	3.76
Merged-chr5-43391891-2	chr5	43391833	43392033	+	812.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123636.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	6.46	3.77	9.13	6.84	5.73	9.72	14.95	8.94	8.85	7.53	16.08	15.04
Merged-chr5-125405863-6	chr5	125405776	125405976	+	812.613892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15859.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.25	4.28	1.71	2.82	6.95	6.27	2.99	3.9	11.01	9.04	13.06	9.71
Merged-chr16-38442905-3	chr16	38442805	38443005	+	812.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9760.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	11.31	5.53	7.42	4.83	9.41	6.9	8.3	8.58	10.42	17.57	21.1	11.28
Merged-chr16-23311898-2	chr16	23311796	23311996	+	812.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	L2|LINE|L2	21426.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.27	5.03	13.69	15.69	8.18	14.42	10.63	7.26	7.67	9.04	21.61	7.52
Merged-chr3-16086739-2	chr3	16086635	16086835	+	812.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80403.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	7.27	9.31	5.13	8.04	4.5	6.9	6.64	10.32	18.69	10.04	19.6	6.58
Merged-chr4-72253768-2	chr4	72253672	72253872	+	812.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	52528.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	4.85	5.79	8.56	12.87	17.18	12.23	8.3	19.99	14.75	9.54	19.6	12.84
Merged-chr19-56530442-2	chr19	56530357	56530557	+	812.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17665.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	8.88	6.54	9.7	4.42	11.45	13.8	10.96	14.94	0.0	0.0	0.0	0.0
Merged-chr3-144617223-3	chr3	144617129	144617329	+	812.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46802.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	8.88	11.07	11.98	7.24	8.18	9.09	7.31	12.87	16.33	13.56	9.55	14.1
Merged-chr16-44087793-2	chr16	44087700	44087900	+	812.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358203, intron 14 of 14)	intron (NM_001358203, intron 14 of 14)	-45792.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	8.08	4.78	11.41	7.24	6.55	11.92	16.94	17.94	14.75	9.04	14.07	9.4
Merged-chr4-137730308-3	chr4	137730203	137730403	+	812.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001331215)	TTS (NM_001331215)	5842.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	18.17	9.56	15.4	15.69	6.95	9.72	3.32	12.0	14.55	17.07	12.06	20.36
Merged-chr19-42026359-3	chr19	42026258	42026458	+	812.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-9680.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	10.9	7.04	15.97	10.05	10.23	14.11	11.63	12.81	17.51	11.05	14.07	7.21
Merged-chr1-33906252-3	chr1	33906150	33906350	+	812.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	1371.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	25.04	26.66	28.52	39.82	9.0	10.35	12.29	13.68	8.65	5.02	3.01	5.33
Merged-chr12-76522234-3	chr12	76522130	76522330	+	812.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	10982.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	9.29	10.82	10.27	8.04	21.27	15.68	7.31	8.92	10.23	12.05	20.1	12.84
Merged-chr6-89364584-2	chr6	89364484	89364684	+	812.516663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1971.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	8.48	9.06	18.25	10.46	11.86	12.23	13.95	10.21	11.01	14.56	9.04	3.76
Merged-chr9-100489117-2	chr9	100489020	100489220	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2647.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.06	16.6	10.84	9.25	14.32	21.01	8.97	12.53	3.93	6.53	7.54	2.51
Merged-chr7-90476857-1	chr7	90476757	90476957	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-862.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	12.92	5.03	7.42	4.83	3.68	5.02	11.63	8.05	5.31	5.02	3.52	4.7
Merged-chr11-69877055-3	chr11	69876957	69877157	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195710, intron 4 of 6)	intron (NM_001195710, intron 4 of 6)	961.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	11.31	10.56	4.56	7.64	15.96	13.48	1.99	7.77	12.59	11.55	16.08	13.16
Merged-chr3-59055059-2	chr3	59054956	59055156	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	46765.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	8.48	9.06	6.28	10.05	4.09	6.9	9.63	13.35	0.79	1.0	1.51	5.95
Merged-chr1-16231559-4	chr1	16231401	16231601	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	125619.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	8.48	3.52	12.55	6.44	2.45	1.57	5.31	7.6	5.7	5.52	3.01	6.58
Merged-chr7-5062850-2	chr7	5062779	5062979	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	736.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	11.31	7.04	10.84	4.83	5.32	9.41	7.64	7.54	12.98	10.54	13.57	6.89
Merged-chr3-68732133-1	chr3	68732033	68732233	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29362.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.81	2.01	3.42	9.25	8.18	5.64	3.99	12.17	0.98	1.51	0.0	0.0
Merged-chr16-87575864-1	chr16	87575764	87575964	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144854, intron 3 of 4)	intron (NM_144854, intron 3 of 4)	22534.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	3.63	0.25	1.14	1.61	9.82	7.53	6.98	7.21	0.0	0.5	4.02	0.31
Merged-chr19-7307216-2	chr19	7307109	7307309	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-11762.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	8.48	7.04	12.55	12.87	4.09	2.2	6.31	9.5	5.51	4.02	3.01	0.0
Merged-chr9-124275646-1	chr9	124275546	124275746	+	812.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	37048.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	2.83	3.02	3.42	2.82	10.23	6.9	2.33	2.97	9.64	17.07	2.01	15.98
Merged-chr9-59585001-3	chr9	59584896	59585096	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175235, intron 2 of 11)	intron (NM_175235, intron 2 of 11)	-4292.0	NM_001361099	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	6.46	8.3	3.42	5.23	6.55	14.42	0.66	11.61	17.31	11.55	6.03	10.96
Merged-chr17-5610171-1	chr17	5610071	5610271	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	117571.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	1.01	8.56	6.44	10.64	6.59	2.99	6.84	3.93	3.51	5.53	1.57
Merged-chr18-4333818-1	chr18	4333718	4333918	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007746, exon 7 of 8)	exon (NM_007746, exon 7 of 8)	19135.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.63	5.79	4.56	5.23	7.77	4.7	6.64	14.47	5.9	10.04	4.52	7.52
Merged-chr15-67124910-2	chr15	67124819	67125019	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 3 of 8)	MIRc|SINE|MIR	51963.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.85	3.02	2.85	7.24	49.5	47.04	39.86	46.01	5.51	11.55	19.09	4.39
Merged-chr14-33243466-2	chr14	33243371	33243571	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	26648.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.44	3.27	11.98	6.44	17.18	23.2	21.59	34.32	2.75	11.55	11.56	5.33
Merged-chr19-34685053-1	chr19	34684953	34685153	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 2 of 6)	intron (NM_172838, intron 2 of 6)	44164.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	6.46	4.28	0.0	4.02	9.0	7.84	7.64	15.03	2.16	1.0	3.52	3.45
Merged-chr1-64318132-1	chr1	64318032	64318232	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-196743.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.46	5.03	5.7	5.23	10.23	7.21	13.29	10.71	6.1	3.01	12.06	0.94
Merged-chr11-119238306-5	chr11	119238188	119238388	+	812.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175430, intron 6 of 18)	(TTTG)n|Simple_repeat|Simple_repeat	9716.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	4.85	8.3	4.56	6.44	9.0	5.33	4.65	7.15	3.93	8.03	5.02	8.46
Merged-chr19-5797760-3	chr19	5797629	5797829	+	812.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-1748.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	18.98	10.06	7.99	18.5	6.14	8.47	6.31	3.5	11.8	17.57	7.03	9.4
Merged-chr12-8502622-3	chr12	8502506	8502706	+	812.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2597.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	14.94	9.31	8.56	12.07	6.14	9.09	8.97	9.2	9.05	23.6	9.55	10.65
Merged-chr13-31806510-3	chr13	31806402	31806602	+	812.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008592)	promoter-TSS (NM_008592)	-144.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	12.92	8.8	5.13	6.44	15.96	9.09	13.62	16.01	11.21	3.01	13.57	5.33
Merged-chr7-29179501-3	chr7	29179408	29179608	+	812.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026545, intron 1 of 6)	intron (NM_026545, intron 1 of 6)	1165.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	10.9	24.15	9.7	6.44	14.32	26.03	2.66	6.17	25.77	27.11	25.12	13.78
Merged-chr3-10292792-3	chr3	10292716	10292916	+	812.4277950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	8367.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	9.29	9.31	4.56	20.11	13.09	6.27	14.62	12.34	10.62	5.52	16.08	8.77
Merged-chr4-133493953-3	chr4	133493864	133494064	+	812.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	4586.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	16.15	15.34	9.7	11.26	22.09	25.71	8.97	12.14	24.19	17.57	17.59	8.46
Merged-chr12-31921229-3	chr12	31921103	31921303	+	812.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29042.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	7.67	3.52	11.41	7.24	15.96	9.72	8.97	15.03	14.16	15.57	33.67	17.23
Merged-chr7-135669539-2	chr7	135669456	135669656	+	812.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 9 of 17)	intron (NM_001316681, intron 9 of 17)	-17242.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	8.08	2.01	3.99	8.85	8.18	7.84	3.99	8.36	12.59	17.57	8.04	9.71
Merged-chr1-17097942-2	chr1	17097840	17098040	+	812.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020604)	promoter-TSS (NM_020604)	-51.0	NM_020604	57339.0	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	JP-1|Jp1	junctophilin 1	protein-coding	10.09	8.05	11.41	17.29	15.14	4.7	7.31	15.87	4.33	5.52	5.53	6.27
Merged-chr1-133685961-3	chr1	133685865	133686065	+	812.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159649, intron 2 of 5)	intron (NM_001159649, intron 2 of 5)	4051.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	18.98	14.59	24.53	12.87	10.64	29.79	20.93	22.54	4.92	14.06	12.56	13.78
Merged-chr6-58661170-3	chr6	58661071	58661271	+	812.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355477, intron 2 of 15)	intron (NM_001355477, intron 2 of 15)	64499.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	12.92	12.32	5.7	7.24	19.64	15.99	14.28	20.3	13.57	10.04	23.62	9.4
Merged-chr15-102224672-3	chr15	102224582	102224782	+	812.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013566, exon 3 of 15)	exon (NM_013566, exon 3 of 15)	7253.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	11.31	13.58	5.7	7.64	11.05	18.5	7.97	8.1	12.78	9.54	23.11	8.14
Merged-chr12-30597131-3	chr12	30597018	30597218	+	812.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12675.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	14.13	7.55	7.42	6.03	15.14	10.98	12.62	21.28	10.82	5.52	15.07	5.01
Merged-chr1-92976699-5	chr1	92976581	92976781	+	812.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	1334.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.23	4.28	2.28	5.63	4.09	1.57	4.32	4.21	6.69	9.04	6.53	3.13
Merged-chr16-33988558-2	chr16	33988452	33988652	+	812.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 55 of 59)	intron (NM_177357, intron 55 of 59)	-21514.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.23	5.03	12.55	3.22	6.95	11.29	4.65	7.68	17.11	7.53	9.04	12.22
Merged-chr3-36854229-3	chr3	36854114	36854314	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8892.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.25	7.29	6.28	20.91	30.27	14.74	14.62	18.22	7.47	6.53	11.05	11.59
Merged-chr9-90271660-3	chr9	90271563	90271763	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-894.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	9.29	6.54	10.84	3.62	11.86	14.11	13.29	14.02	13.96	19.08	16.58	16.92
Merged-chr17-13440860-1	chr17	13440760	13440960	+	812.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80596.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	1.62	4.78	4.56	1.61	10.23	18.5	8.3	13.93	5.11	1.0	2.51	1.57
Merged-chr8-125278461-1	chr8	125278361	125278561	+	812.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	214372.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.06	8.55	2.28	4.42	15.55	20.07	10.63	6.59	0.79	0.5	1.0	0.63
Merged-chr5-21295845-3	chr5	21295748	21295948	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 17 of 18)	intron (NM_029195, intron 17 of 18)	-76825.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	8.08	6.79	17.68	13.67	13.91	21.64	16.28	16.18	10.23	17.07	15.07	4.39
Merged-chr11-106742396-3	chr11	106742275	106742475	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-8851.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	11.31	13.08	1.71	8.04	13.5	6.9	6.64	2.75	29.11	13.56	18.59	5.95
Merged-chr13-56135000-2	chr13	56134932	56135132	+	812.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159513, intron 1 of 8)	CpG	518.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	8.08	10.06	9.13	12.47	4.91	11.92	9.63	7.93	12.19	15.06	17.08	15.66
Merged-chr18-34196078-2	chr18	34195963	34196163	+	812.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24921.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.25	5.03	11.41	12.47	16.36	7.53	7.97	21.06	11.41	16.07	11.05	12.22
Merged-chrX-99199230-3	chrX	99199150	99199350	+	812.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63189.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	11.31	2.77	4.56	9.25	20.46	6.59	17.94	21.9	12.19	6.53	16.08	7.83
Merged-chr4-82867313-3	chr4	82867222	82867422	+	812.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7649.0	NM_026647	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	9.69	11.82	17.11	4.83	9.0	15.68	11.63	11.13	9.05	14.56	10.55	9.4
Merged-chr2-71039874-3	chr2	71039769	71039969	+	812.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15737.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	12.92	8.55	7.99	18.5	8.59	4.39	9.63	15.39	15.34	9.04	20.1	12.53
Merged-chr9-66939029-3	chr9	66938941	66939141	+	812.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7045.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	9.69	15.59	16.54	9.65	10.64	18.81	8.64	11.21	20.06	11.05	20.6	15.98
Merged-chr2-25422753-2	chr2	25422584	25422784	+	812.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289453)	promoter-TSS (NM_001289453)	-558.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	3.23	3.02	4.56	1.61	9.82	4.7	5.65	3.48	6.49	7.03	5.02	6.27
Merged-chr8-35850567-3	chr8	35850444	35850644	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23985.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	10.09	6.54	2.28	9.65	6.55	8.47	7.64	8.02	41.3	28.62	33.67	33.83
Merged-chr14-25475011-3	chr14	25474905	25475105	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	15820.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.04	6.04	3.99	12.07	18.0	9.41	18.6	12.95	8.06	11.55	16.58	11.9
Merged-chr13-46168930-3	chr13	46168830	46169030	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104791.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	19.79	14.84	18.25	11.26	11.45	21.64	6.64	7.04	15.54	15.06	13.57	15.98
Merged-chr4-19873800-3	chr4	19873692	19873892	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48774.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.25	9.06	3.42	8.85	3.27	19.44	7.97	10.35	17.11	13.56	5.02	6.89
Merged-chr11-94404818-2	chr11	94404704	94404904	+	812.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11828.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	8.48	5.79	1.71	4.42	18.82	16.31	6.31	10.15	10.82	7.53	10.05	6.27
Merged-chr4-99368252-3	chr4	99368165	99368365	+	812.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174118.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.44	7.04	16.54	13.27	7.77	8.47	12.95	27.95	24.59	15.57	43.21	32.58
Merged-chr10-75676450-2	chr10	75676350	75676550	+	812.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	MIR3|SINE|MIR	-32442.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	4.04	4.02	3.42	6.03	9.82	6.9	3.99	8.16	11.8	9.04	13.06	5.01
Merged-chr1-24481788-2	chr1	24481688	24481888	+	812.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	105649.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.63	3.27	6.28	2.41	6.14	3.76	4.32	8.75	15.54	11.05	17.59	5.64
Merged-chr2-153338508-2	chr2	153338410	153338610	+	812.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7300.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	9.69	6.79	22.82	14.48	8.18	5.96	15.28	14.66	2.75	2.51	4.52	5.95
Merged-chr16-43580594-2	chr16	43580495	43580695	+	812.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-60060.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	12.11	8.55	8.56	10.86	13.09	3.76	17.61	15.76	5.11	4.02	7.03	1.25
Merged-chr1-138210809-2	chr1	138210722	138210922	+	812.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35517.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.06	1.26	10.84	2.01	14.32	2.51	10.3	10.57	10.03	6.03	12.06	1.88
Merged-chr19-4228499-3	chr19	4228411	4228611	+	812.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3382.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	10.9	5.28	10.84	10.46	12.68	11.29	4.32	8.58	10.03	20.59	13.06	15.35
Merged-chr5-142818876-3	chr5	142818747	142818947	+	812.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1460.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	13.33	13.83	7.42	7.24	13.09	11.6	7.64	7.65	12.98	10.54	16.58	10.34
Merged-chr1-155058731-3	chr1	155058618	155058818	+	812.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24546.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	11.71	6.79	11.41	11.26	15.55	8.47	3.32	9.53	12.78	10.54	9.04	17.54
Merged-chr17-29842421-3	chr17	29842323	29842523	+	812.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 8 of 15)	intron (NM_001081160, intron 8 of 15)	45459.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	7.67	4.28	7.42	9.65	15.96	8.47	14.95	16.49	13.57	10.54	20.6	11.9
Merged-chr5-33954571-3	chr5	33954464	33954664	+	812.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR46|LTR|ERVK	-18306.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	16.15	12.07	14.26	9.65	10.23	5.96	8.64	13.07	18.1	19.58	13.06	9.08
Merged-chr4-151981537-3	chr4	151981440	151981640	+	812.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172704, exon 16 of 16)	3' UTR (NM_172704, exon 16 of 16)	7446.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	9.29	8.3	9.13	16.49	14.73	14.42	9.97	11.8	19.67	9.54	20.1	10.34
Merged-chr15-84979481-3	chr15	84979367	84979567	+	812.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8504.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	8.88	5.53	10.84	14.48	11.05	8.47	10.96	13.99	12.98	13.56	22.61	9.71
Merged-chr6-115523165-2	chr6	115523046	115523246	+	812.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21558.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	14.54	7.8	10.84	6.84	15.55	5.02	12.62	18.53	4.92	7.53	7.03	3.13
Merged-chr7-7300720-3	chr7	7300622	7300822	+	812.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126157, exon 1 of 3)	non-coding (NR_126157, exon 1 of 3)	129.0	NR_126157	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	6.06	8.3	3.99	8.85	7.77	5.33	13.95	9.98	29.11	17.57	29.14	22.24
Merged-chr18-79993494-3	chr18	79993415	79993615	+	812.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53380.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	8.48	10.31	11.41	9.25	18.82	15.99	13.62	19.21	12.59	7.53	23.62	9.71
Merged-chr9-14846889-3	chr9	14846793	14846993	+	812.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13317.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	8.08	6.29	11.41	8.45	6.95	6.9	8.3	16.79	15.34	21.09	22.11	12.22
Merged-chr12-86803872-3	chr12	86803771	86803971	+	812.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	69502.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	6.46	9.56	13.69	10.46	16.36	9.09	22.26	15.03	13.57	14.56	21.61	10.34
Merged-chr4-141404979-3	chr4	141404866	141405066	+	812.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019701, intron 18 of 19)	intron (NM_019701, intron 18 of 19)	-6260.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	6.86	12.07	1.14	6.03	4.09	15.05	8.97	8.97	15.93	13.56	12.06	15.35
Merged-chr16-78264819-1	chr16	78264719	78264919	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-9365.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.85	3.77	5.13	8.45	3.68	5.64	5.31	6.9	3.54	11.05	4.02	5.33
Merged-chr18-3010342-1	chr18	3010242	3010442	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113070.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	6.06	4.02	2.85	4.02	7.36	2.82	8.64	7.74	0.98	0.0	1.0	1.88
Merged-chr13-36557531-1	chr13	36557431	36557631	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176946.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.23	0.5	0.57	1.61	4.5	10.35	10.63	6.9	5.51	3.01	11.56	5.33
Merged-chr14-54913101-1	chr14	54913001	54913201	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360406)	promoter-TSS (NM_001360406)	31.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	2.83	2.52	2.85	2.41	11.86	9.72	6.64	0.84	5.31	4.02	10.55	3.13
Merged-chr15-38620428-1	chr15	38620328	38620528	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-25494.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	2.83	7.55	10.27	1.61	3.27	4.39	5.65	9.73	10.03	8.03	9.55	7.83
Merged-chr19-41777007-1	chr19	41776907	41777107	+	812.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	25077.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0.0	0.25	2.28	0.8	7.36	1.57	1.33	1.6	20.65	12.05	17.08	9.71
Merged-chr8-104115746-1	chr8	104115646	104115846	+	812.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	B3|SINE|B2	-9873.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.4	2.26	2.28	6.44	2.05	1.88	4.65	2.38	14.75	16.07	23.11	9.71
Merged-chr2-57108528-1	chr2	57108428	57108628	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001139509, intron 7 of 7)	intron (NM_001139509, intron 7 of 7)	6510.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	7.67	3.27	3.42	2.82	11.86	7.84	2.66	8.1	7.67	4.52	5.53	8.46
Merged-chr18-39100936-1	chr18	39100836	39101036	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 3 of 21)	intron (NM_001361073, intron 3 of 21)	107791.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.21	3.52	3.42	3.22	9.0	3.14	5.31	11.41	4.33	2.01	4.02	3.76
Merged-chr18-54916048-1	chr18	54915948	54916148	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	74132.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.62	4.02	5.13	2.41	7.36	10.66	2.33	8.94	6.88	2.01	10.05	7.83
Merged-chr10-93376945-1	chr10	93376845	93377045	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40734.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	3.63	2.01	5.7	5.63	6.95	8.15	9.3	10.32	0.0	1.0	1.51	3.13
Merged-chr4-3954194-1	chr4	3954094	3954294	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14770.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	3.63	5.03	0.57	6.44	8.59	6.27	10.63	6.56	5.31	5.52	10.05	5.01
Merged-chr8-70562942-3	chr8	70562832	70563032	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	23257.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.02	9.81	10.27	5.23	11.86	17.87	18.27	23.64	4.52	11.05	18.09	9.71
Merged-chr6-22423608-2	chr6	22423549	22423749	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67568.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.65	5.03	6.28	11.66	13.09	2.2	3.65	11.47	11.41	7.03	7.54	10.34
Merged-chr17-15583248-2	chr17	15583162	15583362	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19939.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	12.92	3.02	6.85	11.26	5.73	14.74	6.98	10.82	1.57	4.02	3.01	1.57
Merged-chr1-54832815-1	chr1	54832715	54832915	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	(GGGA)n|Simple_repeat|Simple_repeat	93572.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.46	4.53	1.14	4.83	7.36	3.76	3.65	4.43	7.08	6.03	3.01	1.88
Merged-chr6-99521415-1	chr6	99521315	99521515	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347345)	promoter-TSS (NM_001347345)	-422.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.83	4.28	1.14	5.23	4.09	7.84	1.33	5.44	4.33	4.52	5.53	4.39
Merged-chr1-84218081-1	chr1	84217981	84218181	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_105771)	TTS (NR_105771)	880.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	4.04	5.53	9.7	4.02	7.36	2.51	9.63	8.24	4.72	5.52	6.03	3.76
Merged-chr2-131142805-2	chr2	131142707	131142907	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028306, intron 10 of 12)	intron (NM_028306, intron 10 of 12)	15395.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	6.06	5.53	6.28	4.83	6.95	6.27	3.32	9.39	12.19	8.03	7.03	8.77
Merged-chr3-152461656-1	chr3	152461556	152461756	+	812.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001346655, exon 13 of 13)	3' UTR (NM_001346655, exon 13 of 13)	64972.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	2.85	0.8	0.82	0.0	0.66	1.57	15.54	3.51	10.55	10.96
Merged-chr8-91377029-3	chr8	91376928	91377128	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	63503.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	9.69	9.31	12.55	14.48	4.5	5.33	10.3	10.4	13.96	3.01	11.56	10.02
Merged-chr14-105736511-3	chr14	105736400	105736600	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112730.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	9.69	13.08	14.83	6.84	8.59	10.98	7.31	9.39	8.65	8.03	12.56	11.28
Merged-chr14-73227329-1	chr14	73227229	73227429	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10562.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.63	1.51	11.41	8.85	4.91	4.39	6.98	8.36	1.97	2.51	1.0	6.89
Merged-chr3-21941710-1	chr3	21941610	21941810	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-134942.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.08	4.28	3.42	16.09	1.64	6.27	9.3	11.19	5.9	15.57	8.04	5.64
Merged-chr10-125386825-2	chr10	125386727	125386927	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57864.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	11.31	8.05	1.14	10.46	8.59	4.39	3.99	9.73	4.92	2.51	2.51	2.82
Merged-chr17-43518860-3	chr17	43518780	43518980	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16107.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	8.88	8.05	11.41	5.63	6.14	18.5	8.97	5.38	9.24	5.52	7.54	6.27
Merged-chr11-86099504-1	chr11	86099404	86099604	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178309, intron 16 of 19)	intron (NM_178309, intron 16 of 19)	-75154.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	6.86	4.28	6.85	6.03	7.36	3.14	6.64	11.47	4.72	5.52	8.04	4.39
Merged-chr19-25547444-1	chr19	25547344	25547544	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015826, intron 3 of 4)	intron (NM_015826, intron 3 of 4)	41738.0	NM_015826	50796.0	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	5.25	4.53	10.27	7.24	9.0	8.15	1.99	13.82	2.16	3.01	9.04	4.07
Merged-chr17-42860567-1	chr17	42860467	42860667	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009847, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	15857.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.67	3.52	3.42	3.22	5.73	8.47	3.32	9.34	6.29	3.01	6.53	6.58
Merged-chr2-93841540-1	chr2	93841440	93841640	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183220, intron 7 of 14)	intron (NM_183220, intron 7 of 14)	8259.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	3.23	3.52	0.0	3.62	2.86	2.2	8.64	5.64	5.31	4.02	7.03	1.88
Merged-chr8-124896910-3	chr8	124896852	124897052	+	811.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	753.0	NM_198103	102058.0	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	7.67	17.86	7.42	14.08	6.14	7.53	14.95	10.46	7.67	13.05	11.05	10.34
Merged-chr2-174171275-3	chr2	174171180	174171380	+	811.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040530, intron 1 of 3)	Lx8|LINE|L1	12638.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	11.31	8.55	5.7	17.29	6.95	16.62	12.62	15.0	26.36	18.58	25.12	9.4
Merged-chr6-56569151-3	chr6	56569038	56569238	+	811.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135561.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	10.5	9.06	7.99	15.28	15.55	10.66	11.96	29.8	14.75	9.54	17.59	7.52
Merged-chr17-24173588-3	chr17	24173498	24173698	+	811.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3920.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	6.06	14.59	17.11	6.44	6.55	14.11	5.31	2.38	14.75	10.04	13.06	10.96
Merged-chr15-6337250-3	chr15	6337157	6337357	+	811.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37468.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	11.31	4.53	4.56	10.46	18.0	9.09	5.98	11.58	14.36	7.53	16.08	7.52
Merged-chr18-60982743-3	chr18	60982641	60982841	+	811.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	19187.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	16.56	6.79	11.41	7.64	5.32	5.02	13.29	9.03	15.14	9.04	25.12	12.53
Merged-chr4-95905403-3	chr4	95905310	95905510	+	811.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	61625.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	16.96	18.11	9.13	9.65	6.95	7.53	4.98	12.25	11.8	9.04	15.58	8.14
Merged-chr1-190170741-2	chr1	190170632	190170832	+	811.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	95.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	3.23	4.28	0.57	4.83	19.23	22.58	7.97	27.08	9.05	9.04	19.09	7.52
Merged-chr1-121135848-2	chr1	121135738	121135938	+	811.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	48433.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.81	4.53	7.99	6.44	6.95	5.02	6.64	6.59	13.37	9.04	26.13	10.65
Merged-chr8-84554632-2	chr8	84554499	84554699	+	811.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	108253.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.25	2.77	4.56	4.42	2.86	5.96	3.32	2.92	0.0	0.0	1.0	0.0
Merged-chr3-142497428-2	chr3	142497336	142497536	+	811.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	502.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	16.15	23.9	3.42	4.02	11.05	17.87	11.29	7.07	8.26	13.05	7.54	6.89
Merged-chr11-22759911-3	chr11	22759800	22760000	+	811.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99835.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	13.73	10.06	13.12	4.02	12.68	17.25	7.64	8.89	11.41	8.03	11.56	2.82
Merged-chr8-3330900-3	chr8	3330768	3330968	+	811.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22547.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	11.71	3.52	14.26	11.66	12.27	15.37	8.97	13.46	15.54	23.1	11.05	13.78
Merged-chr11-34770698-3	chr11	34770582	34770782	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	13223.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	8.48	9.56	2.85	8.45	11.05	12.54	13.95	8.33	9.44	10.54	8.54	8.14
Merged-chr17-50394138-3	chr17	50394055	50394255	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100535.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	9.29	9.06	7.42	7.64	9.82	15.99	8.3	6.98	20.26	12.05	9.55	5.01
Merged-chr16-56028644-3	chr16	56028548	56028748	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356449, intron 1 of 5)	intron (NM_001356449, intron 1 of 5)	1069.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	4.44	10.56	9.13	10.05	4.91	8.78	4.32	10.35	9.64	10.04	13.57	11.28
Merged-chr3-132033986-3	chr3	132033895	132034095	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51297.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	12.52	10.82	5.7	15.69	9.82	13.17	7.64	8.44	14.75	11.05	6.03	7.52
Merged-chr4-47080438-3	chr4	47080350	47080550	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-11503.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	5.25	6.54	7.99	14.08	14.73	16.31	6.31	16.32	7.28	14.06	14.07	11.59
Merged-chr16-11652845-3	chr16	11652758	11652958	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 16 of 20)	intron (NM_028964, intron 16 of 20)	-126844.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	6.86	10.56	28.52	13.67	11.45	8.15	3.32	13.37	22.82	4.02	15.58	18.17
Merged-chr16-55832235-3	chr16	55832152	55832352	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	6389.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.69	5.03	9.7	13.27	16.36	10.66	6.31	8.24	18.69	4.02	12.06	10.02
Merged-chr7-98717661-1	chr7	98717561	98717761	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028410, exon 5 of 5)	3' UTR (NM_028410, exon 5 of 5)	14414.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	1.51	2.28	0.8	7.36	9.41	6.64	14.83	2.56	3.51	6.53	4.39
Merged-chr3-133755108-2	chr3	133755019	133755219	+	811.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-210729.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.63	12.58	7.42	9.65	5.32	6.9	3.99	9.79	11.8	3.01	8.04	5.33
Merged-chr6-85154929-1	chr6	85154829	85155029	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17165.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	4.44	4.28	2.28	6.84	11.86	9.72	5.98	7.63	6.29	7.53	10.05	6.27
Merged-chr14-31413404-2	chr14	31413301	31413501	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	4276.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.65	4.28	5.7	0.4	14.73	11.6	4.65	8.24	14.36	9.04	4.02	9.4
Merged-chr4-136309929-1	chr4	136309829	136310029	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1013.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	3.23	4.78	3.99	6.03	10.64	13.17	6.31	6.73	13.18	5.52	4.52	4.07
Merged-chr10-100839671-2	chr10	100839584	100839784	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98049.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	8.08	3.02	5.13	20.11	7.36	12.86	5.31	11.66	14.95	13.56	24.12	9.4
Merged-chr10-26753308-1	chr10	26753208	26753408	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19204.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.65	1.01	4.56	8.85	13.5	9.09	4.65	8.58	14.16	1.0	4.02	2.19
Merged-chr11-3291025-1	chr11	3290925	3291125	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	568.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	5.65	8.55	2.28	5.23	4.91	8.78	5.98	8.94	5.9	10.04	6.03	6.58
Merged-chr7-101051936-3	chr7	101051814	101052014	+	811.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39861.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.85	13.83	10.84	8.04	12.27	15.99	5.98	3.08	7.08	9.54	8.04	8.14
Merged-chr18-39446117-3	chr18	39446022	39446222	+	811.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	41123.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	10.9	4.53	25.67	6.44	14.32	23.52	9.63	13.21	11.01	16.07	9.04	8.77
Merged-chr2-173224237-3	chr2	173224109	173224309	+	811.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022995)	TTS (NM_022995)	-5287.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	7.27	7.55	17.11	5.63	3.68	17.87	8.64	7.57	15.54	11.05	11.05	11.28
Merged-chr1-84148056-3	chr1	84147959	84148159	+	811.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	70902.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	8.08	7.29	19.97	12.07	18.41	18.5	12.95	35.36	13.77	8.54	16.58	12.53
Merged-chr13-85430226-3	chr13	85430123	85430323	+	811.705566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140737.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	12.92	21.38	23.96	10.86	20.86	7.53	11.29	15.93	35.8	7.53	21.1	9.4
Merged-chr6-115361675-2	chr6	115361571	115361771	+	811.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	527.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.06	10.31	8.56	8.04	9.41	11.92	6.31	8.07	4.33	7.03	12.56	8.14
Merged-chr8-8477686-1	chr8	8477586	8477786	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	183087.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.83	0.0	0.57	0.0	13.09	6.59	3.99	9.67	4.33	1.51	6.53	3.13
Merged-chr7-98103475-1	chr7	98103375	98103575	+	811.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	5773.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.83	1.51	4.56	1.61	4.91	1.25	1.66	1.68	12.59	10.04	5.53	10.96
Merged-chr12-75595622-3	chr12	75595505	75595705	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012024, intron 1 of 13)	CpG	595.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	4.04	7.8	5.13	6.44	4.09	4.39	3.32	4.85	6.88	3.51	11.56	8.14
Merged-chr18-17733874-1	chr18	17733774	17733974	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-152884.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	5.25	3.02	3.42	4.02	8.59	7.21	12.62	16.04	5.51	10.04	7.03	5.33
Merged-chr18-11866341-1	chr18	11866241	11866441	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	ORR1A3-int|LTR|ERVL-MaLR	-25903.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	3.63	2.77	7.99	7.64	3.27	10.35	11.63	11.07	5.31	4.02	9.55	3.76
Merged-chr7-80846961-3	chr7	80846871	80847071	+	811.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31C_MM|LTR|ERVK	-15137.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.27	9.06	9.13	5.23	11.45	14.42	5.98	8.47	25.37	18.08	19.6	11.59
Merged-chr2-5706751-3	chr2	5706653	5706853	+	811.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	8009.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	8.88	2.77	10.84	11.66	15.96	13.48	3.99	14.07	11.01	9.54	12.56	3.76
Merged-chr10-88426649-2	chr10	88426537	88426737	+	811.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-32950.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	6.46	4.02	3.42	6.44	10.23	9.41	7.64	10.96	12.78	8.03	14.07	6.27
Merged-chr17-26530951-2	chr17	26530853	26531053	+	811.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22481.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	13.73	3.02	10.27	5.63	4.5	12.54	12.95	8.44	10.03	16.57	8.04	4.7
Merged-chr2-156547652-2	chr2	156547555	156547755	+	811.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164818)	promoter-TSS (NM_001164818)	79.0	NM_001164818	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	7.67	6.79	6.28	3.62	6.55	10.98	6.98	10.35	11.6	6.53	5.02	6.58
Merged-chr13-38037966-2	chr13	38037873	38038073	+	811.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024242, intron 1 of 16)	intron (NM_024242, intron 1 of 16)	984.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	7.27	5.28	5.7	0.8	7.77	8.15	6.98	7.51	13.77	4.52	8.54	9.4
Merged-chr7-65704978-3	chr7	65704880	65705080	+	811.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11563.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	6.46	11.82	9.13	7.64	15.55	15.68	7.97	6.79	11.6	16.07	13.06	6.58
Merged-chr14-15065378-3	chr14	15065268	15065468	+	811.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	244553.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	17.36	5.28	3.42	9.25	11.86	8.47	15.61	12.93	25.57	18.08	13.57	10.34
Merged-chr19-29496371-2	chr19	29496276	29496476	+	811.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25611.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.25	5.03	17.68	5.23	11.05	6.9	9.97	16.88	16.52	7.53	13.57	7.83
Merged-chr10-118102199-3	chr10	118102103	118102303	+	811.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.67	6.54	10.27	3.62	14.73	3.14	4.32	10.63	10.23	6.03	14.07	4.07
Merged-chr19-6481611-3	chr19	6481522	6481722	+	811.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 10 of 22)	intron (NM_001205234, intron 10 of 22)	61448.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	9.29	5.03	26.24	15.28	11.05	1.57	10.3	12.17	11.41	4.52	13.06	5.95
Merged-chr1-165589351-3	chr1	165589271	165589471	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45170.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	14.94	9.31	21.68	10.05	21.68	12.86	13.29	20.07	6.69	5.02	13.06	12.84
Merged-chr4-33292958-1	chr4	33292858	33293058	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17353.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.25	3.77	3.99	8.85	8.18	7.53	5.98	9.36	4.33	1.0	8.04	3.76
Merged-chr16-33879681-1	chr16	33879581	33879781	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 4 of 14)	L1MEd|LINE|L1	50016.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	8.88	6.79	6.28	3.22	5.32	8.47	2.33	7.18	5.51	11.05	3.01	4.39
Merged-chrX-167180273-5	chrX	167180155	167180355	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28963.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	4.04	4.78	13.69	10.05	7.36	3.45	9.63	10.04	11.6	9.54	8.54	4.39
Merged-chr2-24104092-2	chr2	24103981	24104181	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-7486.0	NR_110359	227606.0	Mm.301625	NM_199059	ENSMUSG00000061809	Tbpl2	Gm348|Trf3	TATA box binding protein like 2	protein-coding	0.81	1.01	2.28	0.8	15.55	8.47	10.3	18.64	8.65	17.57	17.59	10.34
Merged-chr9-63933244-1	chr9	63933144	63933344	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88815.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	1.21	3.02	6.85	2.41	3.27	11.29	5.31	6.93	6.88	4.02	9.55	3.76
Merged-chr4-58968202-1	chr4	58968102	58968302	+	811.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025968, intron 9 of 9)	intron (NM_025968, intron 9 of 9)	18876.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	2.02	0.0	0.0	0.0	0.0	0.0	1.33	2.3	15.74	11.55	14.07	15.98
Merged-chr2-59642857-1	chr2	59642757	59642957	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-3912.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.63	1.51	3.99	4.02	4.5	6.9	5.98	13.01	6.88	1.0	2.01	3.45
Merged-chr7-91457385-2	chr7	91457277	91457477	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	366591.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	10.9	10.82	13.69	13.67	13.91	12.23	5.98	13.43	8.06	10.04	11.56	1.88
Merged-chr11-22653182-2	chr11	22653095	22653295	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	140912.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.04	2.52	6.85	12.07	2.45	3.14	8.3	6.0	9.24	16.07	8.04	11.28
Merged-chr13-63250211-1	chr13	63250111	63250311	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	10182.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.65	3.02	7.99	2.82	5.32	5.33	7.97	15.17	2.75	1.0	5.53	2.19
Merged-chr11-16977789-2	chr11	16977685	16977885	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019549, intron 9 of 9)	ORR1G|LTR|ERVL-MaLR	26375.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	8.08	3.27	13.69	9.65	4.5	14.11	6.31	12.08	4.52	4.52	1.0	2.19
Merged-chr11-78262789-2	chr11	78262682	78262882	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001002004, exon 2 of 39)	exon (NM_001002004, exon 2 of 39)	1028.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	14.94	11.07	5.13	8.04	10.64	8.47	2.66	3.95	8.85	5.02	7.03	7.52
Merged-chr19-53825042-2	chr19	53824951	53825151	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 5 of 13)	intron (NM_001170847, intron 5 of 13)	-67180.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	9.69	5.53	2.85	8.45	2.45	4.7	0.33	2.78	20.65	5.02	25.12	10.65
Merged-chr12-52625241-2	chr12	52625140	52625340	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-22918.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	10.09	3.27	3.99	8.85	7.36	8.47	10.3	12.81	10.62	7.53	15.07	8.46
Merged-chr19-4230607-3	chr19	4230516	4230716	+	811.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-1277.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	6.46	6.79	4.56	7.24	11.45	6.9	13.62	13.88	14.55	16.07	10.55	9.4
Merged-chr7-141025603-3	chr7	141025462	141025662	+	811.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8670.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	10.5	4.02	29.66	9.25	9.0	8.78	3.32	9.5	11.21	7.03	8.04	14.1
Merged-chr10-93332368-2	chr10	93332283	93332483	+	811.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-3828.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	16.96	9.31	14.26	9.25	9.82	12.86	11.96	13.96	4.52	1.0	6.03	7.21
Merged-chr2-11205180-2	chr2	11205064	11205264	+	811.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	MTD|LTR|ERVL-MaLR	32782.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.85	5.03	11.41	4.02	6.95	6.9	5.31	7.93	13.77	10.54	18.59	8.77
Merged-chr15-62044890-3	chr15	62044786	62044986	+	811.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	5629.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	13.73	13.83	4.56	11.66	13.09	8.47	7.31	7.49	15.74	16.07	14.57	9.4
Merged-chr14-79522550-3	chr14	79522433	79522633	+	811.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6859.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	13.33	9.06	12.55	14.48	21.68	16.31	12.29	20.33	11.41	7.53	10.55	5.64
Merged-chrX-167382767-3	chrX	167382667	167382867	+	811.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026662)	promoter-TSS (NM_026662)	-18.0	NM_001313758	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	10.5	3.27	3.99	12.87	13.5	13.48	6.98	9.42	4.13	7.53	13.06	10.34
Merged-chr16-35817461-2	chr16	35817377	35817577	+	811.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152314, intron 6 of 8)	intron (NR_152314, intron 6 of 8)	47091.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	13.33	3.52	6.85	2.82	9.0	9.72	3.65	13.51	19.67	10.04	14.57	7.21
Merged-chr19-28678251-3	chr19	28678065	28678265	+	811.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-59.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	8.88	2.52	3.42	5.23	8.18	4.08	7.97	5.64	4.72	3.01	7.54	9.4
Merged-chr14-32683403-2	chr14	32683302	32683502	+	811.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195097, intron 1 of 3)	intron (NM_001195097, intron 1 of 3)	1870.0	NM_001195097	100504518.0	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	Cefip	RIKEN cDNA 3425401B19 gene	protein-coding	15.75	14.09	12.55	14.48	6.55	9.72	7.64	7.09	2.95	5.52	5.02	3.13
Merged-chr7-4813562-2	chr7	4813491	4813691	+	811.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-1251.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	1.62	3.02	6.28	1.61	13.09	14.11	3.99	6.06	13.96	16.07	11.05	10.65
Merged-chr5-64769473-3	chr5	64769372	64769572	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34051.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	16.56	4.02	5.7	12.87	9.0	7.84	5.31	16.35	18.1	14.06	11.05	3.45
Merged-chr12-34225011-1	chr12	34224911	34225111	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 19 of 27)	intron (NM_001271386, intron 19 of 27)	267340.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.44	5.03	1.71	6.44	9.0	8.15	3.32	6.67	0.0	0.0	0.0	0.0
Merged-chr11-62248848-3	chr11	62248828	62249028	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007413)	promoter-TSS (NM_007413)	-56.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	8.48	5.28	1.14	4.02	11.86	4.7	5.98	3.06	5.11	6.53	3.52	6.58
Merged-chr16-97444043-3	chr16	97443954	97444154	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18851.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	8.08	7.8	8.56	5.63	7.77	10.66	3.65	8.92	22.82	17.57	8.54	8.14
Merged-chr3-37139353-2	chr3	37139262	37139462	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13408.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	12.52	7.04	13.12	12.07	10.23	5.02	9.63	20.44	7.08	2.01	10.05	4.39
Merged-chr5-4877390-1	chr5	4877290	4877490	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-119174.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	2.42	1.76	3.42	0.8	10.23	1.25	7.31	6.45	4.13	10.54	2.01	3.13
Merged-chr2-16228322-1	chr2	16228222	16228422	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-127982.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.23	4.53	1.14	5.23	6.95	5.96	7.97	13.63	6.88	5.02	14.57	5.01
Merged-chr2-102531206-1	chr2	102531106	102531306	+	811.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18815.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	1.62	5.28	0.0	1.61	1.64	0.0	0.66	0.7	18.49	10.54	12.06	18.17
Merged-chr1-173809466-3	chr1	173809352	173809552	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-42533.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	8.88	4.28	4.56	11.26	24.55	38.26	21.92	21.2	10.03	5.52	23.11	6.58
Merged-chr19-28777065-3	chr19	28776958	28777158	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58108.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	12.11	11.57	6.85	11.26	13.09	6.59	17.27	13.6	8.65	7.03	15.07	10.02
Merged-chr4-101349641-3	chr4	101349558	101349758	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040708, intron 1 of 1)	intron (NR_040708, intron 1 of 1)	-2631.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	9.29	6.79	14.83	6.03	6.14	10.66	3.65	9.95	12.19	9.54	7.54	4.7
Merged-chr2-5033918-4	chr2	5033895	5034095	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 9 of 13)	intron (NM_001356487, intron 9 of 13)	-21204.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	4.04	5.79	3.42	16.09	4.09	3.14	12.29	4.46	3.15	7.03	7.03	5.64
Merged-chrX-167172402-1	chrX	167172302	167172502	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36816.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	6.86	3.02	2.28	1.61	8.59	7.53	4.98	6.95	6.88	6.53	4.02	2.51
Merged-chr10-14328365-3	chr10	14328274	14328474	+	811.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	216662.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	12.11	12.07	20.54	16.09	11.86	11.29	34.55	14.47	10.03	10.54	26.13	10.34
Merged-chr1-138822473-2	chr1	138822371	138822571	+	811.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	19973.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.25	0.57	2.41	10.64	6.59	9.97	13.01	12.39	12.55	14.07	5.95
Merged-chr14-101516255-1	chr14	101516155	101516355	+	811.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	92936.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.04	6.29	0.0	4.83	18.41	5.96	7.31	13.68	7.87	8.54	10.05	4.7
Merged-chr3-19011650-2	chr3	19011546	19011746	+	811.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	151449.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	5.25	1.26	6.85	7.64	0.82	4.39	6.31	6.22	33.83	19.08	28.14	16.6
Merged-chr18-4239678-3	chr18	4239577	4239777	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73845.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	10.9	5.28	12.55	8.04	18.41	17.56	11.96	10.63	15.34	13.05	8.54	6.89
Merged-chr4-116827980-3	chr4	116827879	116828079	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6471.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	12.11	8.3	14.83	8.04	9.41	12.86	4.32	9.14	18.1	4.02	17.59	10.02
Merged-chr3-97876268-3	chr3	97876170	97876370	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	12437.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	7.27	8.3	9.13	18.1	0.0	7.84	7.31	15.5	14.16	6.53	9.55	9.08
Merged-chr1-171038098-3	chr1	171038019	171038219	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19193.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	9.69	10.82	5.7	6.84	10.64	12.23	4.32	4.54	23.01	14.06	14.07	13.16
Merged-chr11-55158999-3	chr11	55158912	55159112	+	811.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153170, exon 10 of 10)	3' UTR (NM_153170, exon 10 of 10)	-7306.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	12.11	10.82	4.56	3.22	11.05	12.23	6.98	7.4	8.46	16.57	9.04	10.65
Merged-chr14-73106494-3	chr14	73106335	73106535	+	811.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36075.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.4	6.54	4.56	2.41	3.68	1.88	6.31	2.05	14.36	10.04	5.02	10.02
Merged-chr19-43525254-1	chr19	43525154	43525354	+	811.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-649.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	13.33	4.02	8.56	7.64	7.36	10.98	9.3	13.07	20.46	13.56	31.15	16.6
Merged-chr6-88065294-3	chr6	88065181	88065381	+	811.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19192.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	12.92	16.6	12.55	25.34	11.86	11.29	12.95	16.82	10.42	11.05	22.11	7.21
Merged-chr10-93961457-2	chr10	93961357	93961557	+	811.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001304572)	TTS (NM_001304572)	2406.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	6.46	0.5	7.99	2.01	8.59	1.88	5.31	9.98	16.33	10.04	13.06	19.11
Merged-chr2-68471382-4	chr2	68471243	68471443	+	811.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	CpG	638.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.44	9.81	10.84	7.24	9.82	9.41	5.31	7.63	6.88	7.53	10.55	9.4
Merged-chr10-80774795-2	chr10	80774679	80774879	+	811.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19576.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	6.86	5.03	3.42	5.23	9.0	12.23	2.66	7.49	14.75	10.54	22.11	13.47
Merged-chr14-99298577-3	chr14	99298477	99298677	+	811.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009769)	promoter-TSS (NM_009769)	-114.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	16.56	9.56	7.42	29.36	19.64	21.64	30.56	48.95	14.55	5.52	11.05	6.27
Merged-chr11-43388158-3	chr11	43388088	43388288	+	811.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13727.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	8.08	8.05	12.55	3.22	6.55	9.41	2.99	9.45	10.62	12.55	4.02	12.53
Merged-chr3-126613743-3	chr3	126613650	126613850	+	811.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	16799.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.86	9.56	9.13	16.49	8.59	11.29	20.59	15.08	19.47	12.05	16.08	13.78
Merged-chr8-25609206-3	chr8	25609112	25609312	+	811.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	6928.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	8.88	10.06	11.41	8.85	8.59	12.54	2.66	12.17	27.54	13.56	19.09	8.77
Merged-chr4-3677417-2	chr4	3677337	3677537	+	811.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-684.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	5.25	4.28	6.28	8.04	10.64	6.27	7.31	4.79	12.78	9.04	14.07	15.66
Merged-chr6-116037445-1	chr6	116037345	116037545	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 4 of 5)	intron (NM_177412, intron 4 of 5)	-42440.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.46	2.01	0.0	0.0	9.0	5.33	2.99	10.96	1.38	4.02	3.01	3.13
Merged-chrX-53357512-1	chrX	53357412	53357612	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358456, intron 2 of 6)	intron (NM_001358456, intron 2 of 6)	13047.0	NM_001358456	70380.0	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	1.62	3.02	8.56	6.44	9.0	4.7	4.65	9.93	13.18	5.52	8.04	1.88
Merged-chr6-122658542-3	chr6	122658405	122658605	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32081.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.65	6.04	10.27	14.48	8.18	5.02	8.3	5.1	10.62	5.02	8.04	10.65
Merged-chr15-58978825-1	chr15	58978725	58978925	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	45015.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	7.27	0.75	2.85	2.01	9.0	13.8	4.32	8.52	2.56	1.51	5.02	4.39
Merged-chr16-24785894-1	chr16	24785794	24785994	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	MTE2b|LTR|ERVL-MaLR	64039.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	1.21	2.77	5.7	0.0	4.09	6.27	4.32	7.77	4.33	6.03	6.53	4.7
Merged-chr12-51429238-1	chr12	51429138	51429338	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029825, intron 17 of 24)	intron (NM_029825, intron 17 of 24)	51725.0	NM_029825	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.0	1.51	1.71	3.22	0.41	3.45	8.3	7.71	0.0	0.0	0.0	0.31
Merged-chr8-86006716-1	chr8	86006616	86006816	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199446, intron 15 of 31)	MYSERV-int|LTR|ERVK	165714.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	5.25	6.54	13.12	3.62	3.27	5.02	6.64	7.71	6.1	3.01	6.53	4.07
Merged-chr12-99986963-1	chr12	99986863	99987063	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	22464.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.63	1.51	2.28	2.41	11.86	6.9	5.65	4.63	3.93	5.02	2.01	3.76
Merged-chr11-46849346-1	chr11	46849246	46849446	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38547.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.27	6.29	10.27	6.84	11.05	5.96	3.65	14.22	2.16	1.0	0.0	1.25
Merged-chr6-31455653-1	chr6	31455553	31455753	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	56825.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	2.02	0.5	1.14	0.8	2.05	1.57	5.31	10.04	1.97	1.51	3.01	1.88
Merged-chr13-73513421-1	chr13	73513321	73513521	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 12 of 13)	intron (NM_145376, intron 12 of 13)	-23326.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	4.04	4.53	2.28	6.44	2.45	7.84	2.66	6.03	7.08	3.01	2.01	11.59
Merged-chr1-93817947-1	chr1	93817847	93818047	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025454, intron 7 of 7)	intron (NM_025454, intron 7 of 7)	-7293.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	3.23	2.52	4.56	3.22	2.45	2.2	9.97	5.78	3.93	7.03	4.02	5.33
Merged-chr5-120907619-3	chr5	120907533	120907733	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145211)	promoter-TSS (NM_145211)	-108.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	18.17	8.55	10.27	10.05	9.82	11.92	14.28	12.06	16.33	17.07	14.57	8.46
Merged-chr4-59823252-2	chr4	59823181	59823381	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	L1MB2|LINE|L1	17631.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	1.62	2.01	15.97	5.23	4.5	8.47	5.31	10.71	6.49	10.04	4.02	9.71
Merged-chr12-73905182-1	chr12	73905082	73905282	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	-2685.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.85	3.52	1.14	4.42	7.36	3.45	9.97	8.52	7.28	7.03	7.03	5.95
Merged-chr3-84854640-1	chr3	84854540	84854740	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	Lx8b|LINE|L1	-9505.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.62	1.76	0.0	0.4	4.5	2.2	4.98	7.77	0.98	1.0	1.0	2.19
Merged-chr10-4431007-1	chr10	4430907	4431107	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358796, intron 1 of 13)	MTEb|LTR|ERVL-MaLR	1381.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	2.83	7.29	1.14	7.24	2.05	6.59	18.93	9.03	6.88	6.53	8.54	6.89
Merged-chr6-31107539-1	chr6	31107439	31107639	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-44446.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	9.29	5.53	4.56	1.21	4.91	3.76	2.33	0.84	5.11	3.51	2.51	5.01
Merged-chr2-13279328-1	chr2	13279228	13279428	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 65 of 66)	intron (NM_001081084, intron 65 of 66)	-7913.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	2.02	4.02	3.42	2.82	6.14	1.57	4.98	7.37	9.05	2.01	8.04	5.33
Merged-chr17-35392953-1	chr17	35392853	35393053	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-1146.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.0	0.0	0.0	0.0	0.41	0.94	1.0	0.62	19.47	24.1	6.03	9.08
Merged-chr18-36511173-1	chr18	36511073	36511273	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	4632.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	9.69	5.03	6.28	1.61	8.59	11.29	4.98	3.36	7.47	7.03	1.51	3.76
Merged-chr1-156042094-1	chr1	156041994	156042194	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	1233.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	2.42	2.77	0.0	0.4	2.05	2.2	4.65	3.06	15.93	11.05	6.53	6.27
Merged-chr5-135470604-1	chr5	135470504	135470704	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	ORR1E|LTR|ERVL-MaLR	74518.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	2.83	3.77	9.13	2.41	6.55	1.88	3.32	7.32	7.08	1.0	5.02	3.13
Merged-chrX-48341896-2	chrX	48341802	48342002	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178782, intron 1 of 14)	CpG	544.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	5.65	5.79	7.42	12.07	14.32	10.66	7.64	9.2	7.87	7.03	5.02	6.27
Merged-chr7-127759945-3	chr7	127759864	127760064	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9851.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	13.73	4.28	13.69	4.83	9.41	9.09	5.98	6.62	13.18	7.53	19.6	10.65
Merged-chr6-125651503-1	chr6	125651403	125651603	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 34 of 51)	intron (NM_011708, intron 34 of 51)	-38916.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	1.62	3.02	5.13	4.02	4.91	3.14	5.98	7.04	5.9	5.02	5.02	3.45
Merged-chr14-54780541-1	chr14	54780441	54780641	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	(A)n|Simple_repeat|Simple_repeat	1345.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.83	1.01	1.14	2.41	2.45	5.64	3.99	2.07	4.52	4.52	3.01	1.88
Merged-chr16-49839162-1	chr16	49839062	49839262	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16492.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.27	5.79	10.84	2.41	3.27	5.64	5.98	9.22	4.13	4.02	5.02	3.13
Merged-chr17-22225183-1	chr17	22225083	22225283	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205095, intron 1 of 4)	Lx2|LINE|L1	431.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	0.81	0.5	0.0	0.0	0.82	1.25	0.0	0.22	22.42	9.54	23.62	5.01
Merged-chr16-62785785-1	chr16	62785685	62785885	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	931.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	5.65	6.54	9.13	4.83	4.5	9.41	1.99	6.45	10.82	5.52	13.06	6.27
Merged-chr6-134092194-1	chr6	134092094	134092294	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	56494.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.25	4.53	3.42	5.23	8.18	4.7	3.65	9.08	5.31	4.52	8.54	2.51
Merged-chr11-58610177-1	chr11	58610077	58610277	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144544, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	3315.0	NM_144544	78354.0	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	1.62	1.51	0.0	4.83	3.68	11.92	3.65	13.01	0.39	1.51	1.0	0.0
Merged-chr3-31061909-1	chr3	31061809	31062009	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	22943.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	4.85	7.55	10.84	3.22	4.91	10.35	2.66	4.74	9.44	7.53	14.57	7.21
Merged-chr5-32611607-2	chr5	32611496	32611696	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009535, exon 1 of 12)	5' UTR (NM_009535, exon 1 of 12)	425.0	NM_009535	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	2.02	11.07	6.28	5.23	7.77	2.51	6.31	5.83	10.42	7.53	6.53	10.96
Merged-chr4-123531046-3	chr4	123530937	123531137	+	810.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-85383.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	9.69	13.08	10.27	14.48	11.86	34.18	6.98	17.44	26.55	31.63	20.6	11.9
Merged-chr11-75548103-3	chr11	75547995	75548195	+	810.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 5 of 13)	L1ME3G|LINE|L1	-3334.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	10.09	8.55	13.12	6.44	9.0	20.38	8.97	14.69	18.1	20.59	10.55	14.72
Merged-chr13-101914244-3	chr13	101914117	101914317	+	810.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-146000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.63	8.05	4.56	12.47	9.82	6.27	14.95	11.61	5.31	9.54	13.06	7.21
Merged-chr11-79142218-2	chr11	79142132	79142332	+	810.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	4241.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.06	5.79	10.27	7.64	10.64	10.98	10.96	7.35	11.8	9.54	12.56	6.89
Merged-chr1-195018327-2	chr1	195018224	195018424	+	810.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015566, intron 1 of 7)	intron (NR_015566, intron 1 of 7)	925.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	13.33	2.26	11.41	10.05	3.68	6.59	9.97	12.14	11.01	3.01	5.02	8.46
Merged-chr18-33464090-2	chr18	33463978	33464178	+	810.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	-49.0	NM_001109988	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	12.52	7.8	10.84	6.03	10.23	13.8	7.64	25.79	5.9	7.03	8.04	3.76
Merged-chr4-6371543-2	chr4	6371507	6371707	+	810.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5927.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.02	4.02	4.56	2.82	7.77	13.48	8.64	12.87	12.59	7.03	4.52	7.52
Merged-chr4-32983406-3	chr4	32983351	32983551	+	810.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027491, exon 1 of 7)	5' UTR (NM_027491, exon 1 of 7)	453.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	8.08	6.29	9.7	6.84	12.27	19.76	11.63	27.7	11.6	13.05	8.54	15.04
Merged-chr19-11048238-3	chr19	11048129	11048329	+	810.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102366, intron 2 of 2)	intron (NR_102366, intron 2 of 2)	2337.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	11.31	8.8	10.27	6.03	16.77	11.92	12.29	13.21	16.52	10.04	7.54	11.9
Merged-chr19-36822646-2	chr19	36822563	36822763	+	810.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-11569.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	7.27	3.27	4.56	1.61	6.14	14.42	12.95	8.33	8.26	9.04	17.59	6.89
Merged-chr11-46842438-3	chr11	46842329	46842529	+	810.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 8 of 8)	intron (NM_178759, intron 8 of 8)	31630.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.48	7.04	6.85	16.49	15.55	10.66	38.2	34.96	16.13	9.54	26.63	15.98
Merged-chr10-34158986-2	chr10	34158890	34159090	+	810.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	-31018.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.23	1.76	2.28	4.02	9.41	9.72	2.33	12.11	8.06	6.03	12.06	3.76
Merged-chr13-4618436-2	chr13	4618344	4618544	+	810.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9280.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	1.62	3.27	0.0	1.61	7.77	8.47	3.99	9.79	16.92	12.55	16.08	8.77
Merged-chr2-129491858-1	chr2	129491758	129491958	+	810.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	RMER13A2|LTR|ERVK	44744.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.81	1.01	1.71	0.0	11.45	17.56	12.29	9.14	1.18	0.5	0.5	1.57
Merged-chr18-58576161-4	chr18	58576076	58576276	+	810.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 2 of 9)	intron (NM_001081072, intron 2 of 9)	19936.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	20.19	6.54	8.56	12.07	11.45	13.48	8.64	17.16	12.19	11.05	6.53	10.02
Merged-chr4-88719015-1	chr4	88718915	88719115	+	810.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172871, exon 1 of 1)	3' UTR (NM_172871, exon 1 of 1)	3493.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.46	0.0	9.7	5.63	8.59	9.09	5.98	20.5	7.47	4.02	12.06	3.76
Merged-chr16-3703092-2	chr16	3703004	3703204	+	810.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	15020.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	4.85	1.26	2.28	0.8	10.23	9.41	7.31	8.64	11.8	4.02	13.06	11.59
Merged-chr7-97580420-5	chr7	97580319	97580519	+	810.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	523.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	8.48	13.83	3.42	6.03	5.32	6.9	8.64	5.83	13.57	15.57	7.54	3.76
Merged-chr17-50189481-3	chr17	50189386	50189586	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1011.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	10.9	9.06	20.54	8.85	14.73	20.38	13.29	3.81	17.31	12.55	20.1	8.14
Merged-chr3-30975543-3	chr3	30975438	30975638	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-6123.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	9.29	11.07	6.85	13.67	5.73	18.5	9.3	13.15	10.03	6.03	14.57	10.65
Merged-chr1-91055114-3	chr1	91055025	91055225	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	1681.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.67	6.29	10.27	10.46	9.41	13.48	7.31	13.74	15.54	15.57	14.57	11.59
Merged-chr9-54736537-3	chr9	54736429	54736629	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1980.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	7.27	16.1	2.28	15.28	20.05	14.42	9.63	14.3	9.83	11.55	11.56	9.08
Merged-chr2-181548427-3	chr2	181548300	181548500	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 4 of 5)	intron (NM_001271584, intron 4 of 5)	27915.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	6.46	11.82	13.12	4.83	5.32	11.92	8.3	13.04	8.85	1.51	4.02	5.95
Merged-chr6-135183976-3	chr6	135183890	135184090	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-4490.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	10.09	8.8	9.7	2.41	6.55	11.92	5.98	8.38	107.59	81.84	101.5	45.74
Merged-chr11-69628480-3	chr11	69628389	69628589	+	810.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-4482.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	12.11	10.82	3.99	7.24	9.0	15.05	6.64	5.64	10.23	17.07	16.08	6.27
Merged-chr15-73492439-2	chr15	73492339	73492539	+	810.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20121.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	10.9	5.79	11.98	2.82	7.36	14.11	4.65	12.22	8.65	9.54	6.03	4.07
Merged-chr7-71875466-2	chr7	71875361	71875561	+	810.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-34234.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	10.09	12.83	19.97	12.07	10.23	8.15	16.28	24.9	1.97	5.02	5.53	0.94
Merged-chr19-61004360-1	chr19	61004260	61004460	+	810.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	114611.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.42	1.26	1.14	2.82	7.77	6.9	8.64	13.09	0.39	0.5	3.01	0.94
Merged-chr5-114604479-1	chr5	114604379	114604579	+	810.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	36228.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	3.63	2.26	2.28	1.61	12.68	7.21	7.64	11.07	6.1	5.52	12.56	4.07
Merged-chr13-60707450-3	chr13	60707395	60707595	+	810.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78869.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	7.67	8.55	2.85	10.46	7.36	4.39	7.31	3.98	5.9	2.01	3.01	4.39
Merged-chr12-75727645-3	chr12	75727585	75727785	+	810.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	8044.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	8.08	9.56	3.99	12.87	11.05	8.47	8.97	13.37	5.31	7.53	7.54	9.08
Merged-chr3-95664359-5	chr3	95664330	95664530	+	810.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5709.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.06	6.29	3.99	15.28	14.32	10.03	5.65	3.17	14.36	16.07	11.05	5.01
Merged-chr5-113638210-1	chr5	113638110	113638310	+	810.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	5393.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.42	1.76	0.0	5.63	4.5	8.47	2.66	6.56	7.47	4.52	7.54	8.77
Merged-chr3-142596951-1	chr3	142596851	142597051	+	810.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010259, intron 1 of 10)	Lx9|LINE|L1	2104.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	3.23	10.56	7.42	2.01	4.09	2.2	2.99	7.49	14.36	10.54	17.59	8.14
Merged-chr10-8898475-1	chr10	8898375	8898575	+	810.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12405.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.65	5.03	1.14	0.8	5.32	10.03	7.64	9.0	4.72	1.51	2.01	1.57
Merged-chr15-67424130-1	chr15	67424030	67424230	+	810.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	197361.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.23	4.28	6.28	3.62	6.95	10.35	6.64	11.47	4.52	2.01	5.02	2.19
Merged-chr18-9377523-3	chr18	9377401	9377601	+	810.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	72653.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.92	4.28	19.4	15.69	11.45	10.98	11.96	9.81	19.67	9.54	16.58	7.83
Merged-chr8-36866939-2	chr8	36866869	36867069	+	810.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	L3|LINE|CR1	85473.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.48	7.04	3.99	15.28	9.82	6.59	5.31	13.37	3.74	7.03	7.03	1.57
Merged-chr5-3362206-3	chr5	3362108	3362308	+	810.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	18315.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.46	9.06	13.12	12.47	18.0	11.6	17.94	19.71	13.18	12.55	12.56	15.66
Merged-chr13-101759448-2	chr13	101759351	101759551	+	810.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	8766.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.65	15.09	5.7	9.25	9.0	7.53	12.95	11.83	17.7	5.52	5.53	6.58
Merged-chr3-121694113-3	chr3	121694011	121694211	+	810.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23348.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	8.48	7.04	19.97	10.46	8.18	18.5	10.63	12.53	11.8	12.05	12.56	9.71
Merged-chr5-66364060-3	chr5	66363967	66364167	+	810.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-26402.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	15.34	16.85	19.97	14.08	13.91	7.84	5.31	18.5	9.64	10.04	11.05	16.6
Merged-chr14-66280374-3	chr14	66280325	66280525	+	810.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	627.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.06	6.79	13.69	7.64	6.95	10.03	5.98	11.69	9.05	5.02	10.05	6.89
Merged-chr19-22916007-1	chr19	22915907	22916107	+	810.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	165402.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	6.06	5.28	4.56	8.04	9.41	6.9	12.95	10.43	5.31	8.54	6.53	5.33
Merged-chr2-58282720-3	chr2	58282613	58282813	+	810.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033369, intron 5 of 7)	intron (NM_001033369, intron 5 of 7)	5934.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	12.52	6.29	3.42	13.27	8.59	12.23	3.65	9.25	18.88	11.05	32.16	9.08
Merged-chr7-118766189-3	chr7	118766078	118766278	+	810.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	25907.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	12.92	11.82	20.54	8.85	8.59	12.23	3.99	12.31	10.23	6.03	14.57	6.89
Merged-chr11-22710881-3	chr11	22710780	22710980	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	148855.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	10.09	11.07	10.27	8.04	12.27	6.27	9.3	9.2	10.23	17.07	31.66	9.4
Merged-chr5-30959465-2	chr5	30959397	30959597	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294302, intron 1 of 7)	intron (NM_001294302, intron 1 of 7)	830.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	9.69	6.29	17.11	7.24	3.68	7.84	3.65	11.97	4.52	2.51	9.04	4.7
Merged-chr5-99309150-2	chr5	99309051	99309251	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-56224.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	12.11	22.39	12.55	8.04	15.55	17.56	10.96	10.29	5.31	3.01	2.01	2.82
Merged-chr2-157071750-2	chr2	157071644	157071844	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	7521.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	10.09	9.81	13.69	7.64	11.86	18.5	13.95	11.72	6.88	8.03	3.52	1.57
Merged-chr7-143058483-1	chr7	143058383	143058583	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-4797.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	2.42	5.28	15.97	3.22	5.32	13.8	9.63	5.33	6.29	7.03	10.55	3.76
Merged-chr16-90285342-2	chr16	90285239	90285439	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-836.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.44	2.52	6.85	4.83	7.77	6.59	6.98	11.64	8.26	6.03	9.55	10.65
Merged-chr19-21896511-2	chr19	21896421	21896621	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118181.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.65	6.04	6.85	2.41	10.23	2.51	9.3	9.48	18.69	11.05	10.55	4.07
Merged-chr6-5200125-1	chr6	5200025	5200225	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6179.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.63	1.26	0.0	3.62	8.18	10.03	5.31	11.69	2.75	3.51	5.02	4.7
Merged-chr14-30137132-3	chr14	30137054	30137254	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	114521.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	10.09	6.54	7.42	8.04	14.32	15.05	13.29	14.05	15.34	9.04	22.61	10.65
Merged-chr11-40402484-1	chr11	40402384	40402584	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	290198.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	2.02	0.0	0.0	0.0	6.14	5.33	4.98	8.5	0.2	0.5	0.5	0.94
Merged-chr8-41292225-2	chr8	41292112	41292312	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 21 of 37)	intron (NM_023662, intron 21 of 37)	52453.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.04	5.03	14.83	4.02	5.73	5.96	3.65	11.1	36.98	30.13	25.12	22.56
Merged-chr10-67715805-1	chr10	67715705	67715905	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143846.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	6.06	4.28	5.7	4.83	7.77	6.27	8.3	6.14	6.1	7.53	6.03	6.58
Merged-chr17-50181190-1	chr17	50181090	50181290	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	9307.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.85	2.77	9.13	1.61	7.77	9.41	7.31	8.33	8.46	0.0	5.53	5.33
Merged-chr3-51652433-2	chr3	51652330	51652530	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8749.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	9.29	4.78	3.99	6.03	3.68	14.42	4.32	6.87	12.19	5.02	12.06	7.52
Merged-chr8-120683752-1	chr8	120683652	120683852	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15432.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	5.65	8.05	9.13	4.42	13.91	2.82	7.31	6.39	10.62	5.52	8.04	3.76
Merged-chr8-111393824-3	chr8	111393706	111393906	+	810.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178086)	promoter-TSS (NM_178086)	15.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	6.86	11.32	8.56	6.03	13.09	3.45	10.96	13.12	13.37	9.04	9.55	8.77
Merged-chr5-139338011-3	chr5	139337898	139338098	+	810.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_197980, exon 3 of 3)	3' UTR (NM_197980, exon 3 of 3)	7168.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	7.67	6.79	3.42	2.41	13.91	15.68	6.31	12.17	7.47	8.54	10.55	5.95
Merged-chr13-55622133-2	chr13	55622024	55622224	+	810.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-881.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	11.31	6.79	2.28	6.44	7.77	6.9	6.31	9.39	9.64	6.03	3.52	3.76
Merged-chr4-130782692-3	chr4	130782579	130782779	+	810.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9858.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.06	16.6	9.13	8.85	9.0	24.15	9.63	10.96	16.13	21.59	15.07	9.4
Merged-chr10-30787918-2	chr10	30787814	30788014	+	810.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	15412.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.46	3.52	1.71	3.22	0.82	9.09	5.98	8.07	12.59	12.05	8.04	4.39
Merged-chr10-122817773-2	chr10	122817677	122817877	+	810.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	138462.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	10.5	8.3	6.85	15.28	15.14	10.98	14.95	18.76	1.18	1.0	5.02	3.76
Merged-chr9-107738235-1	chr9	107738135	107738335	+	810.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27760.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	4.44	3.77	10.84	3.22	9.82	3.45	5.31	2.44	13.57	3.51	14.07	10.96
Merged-chr7-101352657-1	chr7	101352557	101352757	+	810.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	4588.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.04	5.53	7.99	12.07	7.77	6.27	7.97	11.36	4.52	5.52	10.55	2.82
Merged-chr9-44581662-1	chr9	44581562	44581762	+	810.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23230.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	4.44	2.77	2.28	6.44	11.05	2.2	0.66	3.48	9.05	19.58	1.51	8.46
Merged-chr15-38650541-3	chr15	38650445	38650645	+	810.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11359.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	10.9	7.8	6.28	10.05	12.68	14.11	15.28	26.5	12.59	20.08	12.56	11.28
Merged-chr8-71752503-3	chr8	71752380	71752580	+	810.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26799.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	7.67	11.57	17.68	11.66	8.59	5.96	10.63	6.73	16.33	4.52	14.57	13.47
Merged-chr16-43448244-1	chr16	43448144	43448344	+	810.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	-28048.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.44	5.53	3.99	6.44	4.5	8.47	6.64	7.85	4.52	7.53	7.54	5.01
Merged-chr1-177703597-2	chr1	177703499	177703699	+	810.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26215.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	3.23	8.8	1.14	6.44	11.45	17.56	7.31	11.69	12.39	14.56	10.55	9.08
Merged-chr11-83082970-3	chr11	83082874	83083074	+	810.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SRV_MM-int|LTR|ERVK	17862.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	10.5	11.07	10.27	4.42	12.27	15.68	8.97	12.48	16.13	20.08	11.05	7.52
Merged-chr15-83134464-3	chr15	83134354	83134554	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-11653.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	8.48	9.31	7.42	6.84	7.36	13.17	7.97	13.35	16.52	3.01	7.54	9.08
Merged-chr17-5582418-2	chr17	5582315	5582515	+	810.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	89815.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.04	7.29	7.42	6.44	11.86	12.23	8.64	19.93	12.59	16.07	14.57	6.27
Merged-chr16-77644521-2	chr16	77644416	77644616	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1757.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	7.67	9.31	3.99	11.26	4.91	7.21	5.65	8.5	2.56	5.02	3.01	5.33
Merged-chr10-75492134-3	chr10	75492039	75492239	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	25242.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	14.13	6.54	9.7	11.26	18.82	6.27	22.92	15.87	13.18	5.02	11.05	8.46
Merged-chr3-9598204-2	chr3	9598108	9598308	+	810.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11877.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	7.67	5.03	9.7	6.44	10.23	10.98	3.32	11.1	15.14	12.05	34.17	9.08
Merged-chr10-83565651-1	chr10	83565551	83565751	+	810.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033375, intron 14 of 32)	intron (NM_001033375, intron 14 of 32)	21710.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	2.42	5.03	4.56	4.83	9.82	7.53	6.31	10.07	12.78	7.53	7.03	2.82
Merged-chr13-100453315-2	chr13	100453207	100453407	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-443.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	11.31	8.3	17.11	6.44	4.91	3.45	2.99	4.4	19.47	9.04	13.06	15.66
Merged-chr7-121078029-3	chr7	121077919	121078119	+	810.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3489.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	10.09	6.04	11.98	12.47	15.96	17.56	10.3	14.1	21.64	10.04	18.09	8.46
Merged-chr1-38011855-3	chr1	38011772	38011972	+	810.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	13862.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	12.11	10.31	9.13	7.64	10.64	10.66	7.97	18.5	17.51	15.06	17.08	10.02
Merged-chr7-4922777-3	chr7	4922681	4922881	+	810.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358882)	promoter-TSS (NM_001358882)	-99.0	NM_001358882	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	10.9	7.04	13.69	10.86	6.95	6.9	3.65	12.25	17.9	18.58	17.08	13.16
Merged-chr13-12395784-1	chr13	12395684	12395884	+	810.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144835, exon 2 of 45)	exon (NM_144835, exon 2 of 45)	409.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	7.27	4.28	15.4	11.26	7.36	6.27	12.95	10.57	12.78	8.54	14.57	14.72
Merged-chr11-120219138-3	chr11	120219034	120219234	+	810.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12483.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	18.17	10.56	11.98	13.67	15.55	15.68	5.65	8.92	11.01	10.04	12.56	13.47
Merged-chr9-35027912-3	chr9	35027808	35028008	+	810.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190912, intron 12 of 15)	(TTG)n|Simple_repeat|Simple_repeat	-88820.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.86	10.56	5.7	5.63	16.36	16.62	12.95	8.55	11.21	10.04	9.55	5.64
Merged-chr12-70226970-3	chr12	70226908	70227108	+	810.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	675.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	7.67	8.3	10.27	8.85	7.36	11.6	12.62	9.59	10.03	8.03	10.05	7.83
Merged-chr17-23844129-2	chr17	23844014	23844214	+	810.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027644)	promoter-TSS (NM_027644)	42.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	9.69	6.54	5.7	12.07	23.32	20.07	6.98	13.4	1.97	4.52	3.52	3.76
Merged-chr16-44032555-2	chr16	44032435	44032635	+	810.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	-4590.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	3.23	3.27	1.71	4.02	4.5	2.51	4.32	12.79	9.64	7.03	8.54	7.52
Merged-chr2-37735944-3	chr2	37735805	37736005	+	810.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-40344.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	9.69	10.31	15.4	12.47	10.64	9.09	6.64	6.76	7.28	3.01	12.56	5.95
Merged-chr13-107947867-3	chr13	107947771	107947971	+	810.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR83|LTR|ERVL	-57807.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	12.52	7.29	29.66	16.09	10.64	10.98	10.63	22.15	10.42	11.55	15.58	13.47
Merged-chr4-7154434-3	chr4	7154343	7154543	+	810.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163720.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	16.56	8.55	15.4	18.9	10.64	2.51	17.27	23.22	10.82	9.04	14.57	9.4
Merged-chr7-59293525-2	chr7	59293433	59293633	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011668, intron 11 of 12)	(CAAAA)n|Simple_repeat|Simple_repeat	53891.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	8.88	3.02	4.56	11.26	17.59	6.9	12.29	25.88	13.77	4.52	4.02	9.71
Merged-chr15-76722305-2	chr15	76722210	76722410	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-137.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	9.69	11.82	7.42	14.08	3.68	11.29	4.98	7.57	8.65	7.03	4.02	8.77
Merged-chr11-116850294-1	chr11	116850194	116850394	+	810.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028865)	TTS (NM_028865)	2800.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	8.48	6.04	7.99	2.41	5.73	4.39	3.32	9.03	16.33	8.03	6.53	9.71
Merged-chr16-67647134-1	chr16	67647034	67647234	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26226.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.81	0.5	2.28	0.8	7.77	8.78	5.65	12.67	1.97	1.0	0.0	0.0
Merged-chr13-5858963-2	chr13	5858852	5859052	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045891)	promoter-TSS (NR_045891)	-860.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.44	4.53	4.56	2.01	5.32	3.76	8.3	7.79	8.85	6.03	5.53	7.52
Merged-chr9-35060095-3	chr9	35060019	35060219	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	-56609.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	13.73	9.31	10.27	8.04	17.18	18.19	4.98	15.03	24.39	13.05	17.59	6.89
Merged-chr13-41788215-2	chr13	41788120	41788320	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	59268.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	16.96	14.84	1.71	1.21	9.82	13.8	4.65	3.67	6.1	10.04	1.0	2.19
Merged-chr6-124262895-1	chr6	124262795	124262995	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31111.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	5.25	3.27	5.13	6.84	1.64	7.53	8.64	10.43	9.44	5.02	10.05	12.84
Merged-chr8-119438178-1	chr8	119438078	119438278	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027950, intron 1 of 5)	B4A|SINE|B4	1016.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.06	12.83	6.28	4.02	11.86	9.09	7.64	3.25	9.44	4.52	7.03	7.21
Merged-chr8-70660484-2	chr8	70660388	70660588	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	-750.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	11.31	9.06	12.55	7.24	22.5	17.87	17.94	26.72	15.93	10.54	17.08	3.13
Merged-chr12-35036341-2	chr12	35036220	35036420	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10869.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.04	11.07	4.56	2.82	13.5	10.03	12.62	7.88	10.82	8.03	11.56	6.58
Merged-chr13-70933621-1	chr13	70933521	70933721	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50673.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	2.02	2.52	2.85	4.02	6.95	4.7	10.3	10.6	5.51	2.51	5.53	2.19
Merged-chr19-56701048-1	chr19	56700948	56701148	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21324.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	4.53	4.56	2.82	10.64	3.14	3.32	7.35	6.69	2.01	3.01	5.01
Merged-chr19-51227948-1	chr19	51227848	51228048	+	810.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-549302.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	2.42	3.52	0.57	4.02	2.45	5.33	0.66	7.54	14.55	6.03	15.58	7.21
Merged-chr11-32643410-1	chr11	32643310	32643510	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	855.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	12.52	8.8	13.69	8.85	6.55	12.54	13.62	6.67	11.8	9.54	19.6	18.48
Merged-chr2-35108941-1	chr2	35108841	35109041	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	-551.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.04	7.04	3.99	2.01	4.91	6.9	3.65	7.79	9.83	3.51	3.01	5.01
Merged-chr1-156939057-1	chr1	156938957	156939157	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357391, intron 1 of 19)	CpG	330.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.06	5.53	5.7	1.21	8.59	4.08	3.99	2.44	7.08	3.51	5.53	3.76
Merged-chr11-53563225-2	chr11	53563129	53563329	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-4140.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	3.63	5.28	11.41	11.26	17.59	4.7	17.61	12.36	5.51	9.04	3.01	11.9
Merged-chr1-61181281-1	chr1	61181181	61181381	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-197151.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	2.42	6.79	2.28	2.41	9.41	11.92	6.31	12.14	7.67	9.54	5.53	5.33
Merged-chr10-41620981-2	chr10	41620879	41621079	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 23 of 47)	intron (NM_001358562, intron 23 of 47)	52963.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.23	2.52	10.84	4.42	4.91	7.53	3.32	5.86	16.72	7.03	15.58	5.64
Merged-chr1-23257429-1	chr1	23257329	23257529	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14840.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	7.27	3.27	2.28	4.42	2.05	5.96	3.99	7.82	10.62	2.01	2.51	3.13
Merged-chr7-34840163-2	chr7	34840038	34840238	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27427.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	6.06	1.76	4.56	3.22	2.45	2.2	10.96	11.07	9.24	4.02	4.02	5.95
Merged-chr13-63148289-1	chr13	63148189	63148389	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-91740.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	1.62	4.53	3.99	6.84	3.68	5.96	12.29	9.7	2.56	0.0	0.0	2.19
Merged-chr1-156437963-2	chr1	156437870	156438070	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 10 of 15)	intron (NM_009230, intron 10 of 15)	-17055.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	9.29	10.56	10.27	9.65	15.55	16.31	16.94	18.95	11.21	3.51	8.04	5.64
Merged-chr4-140167168-1	chr4	140167068	140167268	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	24295.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	1.62	0.75	0.0	0.0	4.91	6.9	2.99	5.52	0.2	0.0	0.5	0.63
Merged-chr7-81850967-1	chr7	81850867	81851067	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-8034.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.04	2.01	7.42	6.03	2.45	5.33	2.66	9.14	4.52	1.51	7.03	5.01
Merged-chr15-35698675-1	chr15	35698575	35698775	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-37628.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	3.23	1.51	1.14	9.65	7.36	8.15	1.0	9.5	4.52	1.51	7.03	8.46
Merged-chr19-37448430-3	chr19	37448328	37448528	+	809.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13587.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	12.11	12.83	11.98	16.89	16.36	14.74	10.3	13.51	10.03	13.56	8.54	14.72
Merged-chr1-134784649-3	chr1	134784564	134784764	+	809.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	19057.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	17.77	10.56	17.11	15.69	2.45	7.53	4.65	7.82	13.18	9.04	4.52	3.76
Merged-chr15-98692388-4	chr15	98692304	98692504	+	809.9375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14943.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	3.63	5.03	2.28	0.0	2.86	10.98	4.32	0.17	10.42	14.56	5.53	2.51
Merged-chr11-94496722-3	chr11	94496595	94496795	+	809.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361558, intron 1 of 8)	intron (NM_001361558, intron 1 of 8)	3279.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	13.73	9.31	10.84	8.85	3.27	13.8	5.65	10.21	10.62	3.01	14.07	6.89
Merged-chr2-73509810-2	chr2	73509703	73509903	+	809.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	19684.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	9.29	5.28	10.27	4.83	11.05	9.72	12.29	24.31	12.78	7.03	15.58	6.58
Merged-chr17-34345176-2	chr17	34345079	34345279	+	809.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010381)	promoter-TSS (NM_010381)	-534.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	9.69	26.91	45.64	13.27	5.73	6.59	1.99	5.89	2.36	0.5	0.0	1.88
Merged-chr3-36532157-3	chr3	36532074	36532274	+	809.894409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10729.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	2.42	12.07	16.54	12.07	6.95	11.29	6.64	12.39	9.64	10.54	11.56	7.52
Merged-chr18-34858168-3	chr18	34858074	34858274	+	809.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3033.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	6.46	11.82	3.42	7.64	7.36	13.8	4.32	9.84	47.4	14.06	42.71	15.04
Merged-chr4-88720468-2	chr4	88720373	88720573	+	809.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	2035.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	8.48	1.01	3.99	6.84	13.5	10.35	5.31	20.13	4.52	6.53	18.09	8.14
Merged-chr7-30393239-4	chr7	30393122	30393322	+	809.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-20566.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	3.63	4.02	14.83	10.46	5.73	7.21	9.97	7.18	14.95	15.57	20.6	9.71
Merged-chr16-33158581-3	chr16	33158471	33158671	+	809.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26500.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	9.29	15.34	23.96	13.27	7.77	14.42	5.65	13.96	16.72	14.06	12.06	8.77
Merged-chr17-69145970-2	chr17	69145855	69146055	+	809.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-10789.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.63	5.79	10.84	6.03	2.45	11.29	7.97	13.32	8.85	16.57	8.04	9.4
Merged-chr3-103745495-3	chr3	103745379	103745579	+	809.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010432, intron 14 of 15)	intron (NM_010432, intron 14 of 15)	-7478.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	8.08	10.56	19.4	17.29	16.77	8.15	23.58	19.37	7.47	7.53	11.56	8.77
Merged-chrX-7865939-3	chrX	7865820	7866020	+	809.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290537, intron 3 of 9)	intron (NM_001290537, intron 3 of 9)	-12386.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	7.67	14.34	10.27	6.44	18.0	11.29	5.31	5.41	12.59	16.07	17.59	5.01
Merged-chr19-18583063-1	chr19	18582963	18583163	+	809.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 9 of 9)	intron (NM_017375, intron 9 of 9)	48750.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.44	1.76	1.14	10.86	9.82	8.78	6.98	20.78	14.55	7.03	5.53	6.58
Merged-chr19-11910681-2	chr19	11910516	11910716	+	809.8000490000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-1783.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	15.75	13.83	10.27	6.84	11.45	14.42	2.66	7.32	5.11	0.5	1.0	3.45
Merged-chr5-101768029-3	chr5	101767916	101768116	+	809.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	2886.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	10.5	7.8	2.85	4.42	5.32	3.14	1.66	3.87	2.95	6.53	8.54	9.71
Merged-chr5-53818003-3	chr5	53817876	53818076	+	809.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	8349.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	4.04	6.29	13.69	12.07	4.5	9.41	9.3	9.08	21.05	6.03	8.54	10.65
Merged-chrX-169807958-1	chrX	169807858	169808058	+	809.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290512, intron 2 of 9)	intron (NM_001290512, intron 2 of 9)	-20201.0	NM_001290504	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	4.85	1.51	2.28	5.63	11.45	3.45	6.98	10.4	12.0	1.0	4.02	2.82
Merged-chr9-32509913-2	chr9	32509780	32509980	+	809.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	31572.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	8.88	7.29	8.56	4.42	6.55	10.98	11.63	10.77	3.74	2.51	4.02	4.39
Merged-chr3-94431219-3	chr3	94431124	94431324	+	809.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001357711, exon 14 of 14)	3' UTR (NM_001357711, exon 14 of 14)	5427.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	12.92	5.03	6.85	22.93	9.41	17.25	21.59	40.18	15.34	12.05	20.1	22.24
Merged-chr12-73658641-3	chr12	73658550	73658750	+	809.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	73854.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	18.17	4.02	9.13	10.46	18.82	15.99	9.63	22.32	15.54	11.05	27.13	9.08
Merged-chr1-131524011-3	chr1	131523912	131524112	+	809.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	3349.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	17.77	27.17	21.68	1.21	9.41	7.21	3.65	0.36	30.49	16.07	15.07	11.9
Merged-chr4-135256751-3	chr4	135256651	135256851	+	809.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	16009.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.65	10.31	12.55	15.28	13.91	18.81	5.98	18.67	12.59	20.08	7.54	12.53
Merged-chr19-34789215-3	chr19	34789128	34789328	+	809.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	31545.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	12.92	11.32	15.4	22.52	9.82	10.66	12.95	11.83	7.28	3.51	19.6	10.02
Merged-chr13-20207274-3	chr13	20207181	20207381	+	809.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	116774.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	19.79	8.05	5.7	8.45	6.55	8.15	5.98	14.19	12.19	12.55	13.57	6.89
Merged-chrX-159510772-3	chrX	159510678	159510878	+	809.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-21890.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	10.09	9.81	11.41	16.89	14.32	19.13	9.3	13.6	9.05	20.08	14.07	10.02
Merged-chr7-145089408-2	chr7	145089301	145089501	+	809.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	118718.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.08	4.02	8.56	9.25	10.23	11.92	9.3	16.26	10.42	12.55	10.05	10.34
Merged-chr11-117177487-3	chr11	117177390	117177590	+	809.705566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22171.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	8.88	8.3	11.41	5.63	12.68	17.25	11.96	8.78	18.1	9.54	18.09	11.9
Merged-chr16-59498825-1	chr16	59498725	59498925	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174848, intron 16 of 18)	RLTR45|LTR|ERVK	27050.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	4.04	4.53	5.7	10.05	8.18	3.14	5.98	10.07	1.97	0.0	0.5	0.63
Merged-chr19-46515563-1	chr19	46515463	46515663	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_053100, exon 6 of 6)	exon (NM_053100, exon 6 of 6)	13915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.44	6.04	5.13	4.02	10.23	5.33	13.29	7.15	11.01	2.01	7.03	1.88
Merged-chr16-34120992-3	chr16	34120920	34121120	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-153982.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	12.11	8.55	17.68	14.88	4.91	10.98	5.98	9.25	8.85	5.52	12.06	4.07
Merged-chr2-170504167-1	chr2	170504067	170504267	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_040367, exon 2 of 3)	non-coding (NR_040367, exon 2 of 3)	-7022.0	NM_009996	13081.0	Mm.6575	NM_009996	ENSMUSG00000038567	Cyp24a1	24-OHase|CP24|Cyp24	cytochrome P450, family 24, subfamily a, polypeptide 1	protein-coding	9.29	10.06	11.41	22.52	2.45	4.08	2.66	2.66	1.57	2.01	8.04	7.83
Merged-chr3-38422021-1	chr3	38421921	38422121	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62795.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	2.01	2.28	2.82	9.0	10.66	9.97	9.84	6.88	10.54	12.06	7.83
Merged-chr1-135700776-3	chr1	135700671	135700871	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19292.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	15.34	9.06	6.85	7.24	6.95	9.72	6.98	7.26	9.83	11.55	16.58	5.95
Merged-chr5-104986889-3	chr5	104986762	104986962	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4145.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	12.92	10.31	11.98	8.85	11.05	18.81	8.64	9.9	7.87	8.54	23.11	10.96
Merged-chr7-19304988-5	chr7	19304922	19305122	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008036, exon 4 of 4)	exon (NM_008036, exon 4 of 4)	5023.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.67	8.8	7.42	10.46	9.0	14.11	4.98	2.89	17.51	12.05	9.04	7.21
Merged-chr16-64884653-1	chr16	64884553	64884753	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	32652.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	6.46	2.26	5.13	4.83	7.36	6.27	6.31	7.93	3.54	7.53	7.03	5.64
Merged-chr3-151424590-1	chr3	151424490	151424690	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-13292.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	8.88	4.28	3.99	7.24	9.0	2.51	10.63	6.7	0.2	0.5	0.0	1.25
Merged-chr13-100148597-2	chr13	100148498	100148698	+	809.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	23743.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	12.11	5.53	9.13	10.46	12.27	5.33	11.96	15.28	4.52	8.03	9.04	9.71
Merged-chr3-29853375-2	chr3	29853287	29853487	+	809.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37630.0	NR_110437	102636083.0		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	1.62	4.53	5.7	6.84	13.5	18.5	9.63	20.05	10.62	14.56	12.06	7.52
Merged-chr6-115033715-2	chr6	115033603	115033803	+	809.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026894, intron 2 of 7)	intron (NM_026894, intron 2 of 7)	4171.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	7.27	7.29	1.14	1.61	7.77	12.86	5.31	13.93	10.42	3.01	12.06	6.89
Merged-chr14-54494403-3	chr14	54494308	54494508	+	809.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18308.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	14.13	3.27	10.27	14.88	17.18	13.8	5.31	6.64	15.34	8.54	10.55	11.28
Merged-chr11-3671361-3	chr11	3671255	3671455	+	809.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198162, intron 5 of 25)	intron (NM_198162, intron 5 of 25)	12655.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	9.29	7.29	4.56	23.73	10.64	10.35	14.28	18.67	14.36	16.57	27.13	9.71
Merged-chr19-9066168-3	chr19	9066075	9066275	+	809.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286518, intron 6 of 6)	MIR|SINE|MIR	21781.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	11.31	12.83	13.12	6.03	15.55	10.03	10.96	13.63	6.29	18.58	14.07	2.51
Merged-chr12-8901295-3	chr12	8901124	8901324	+	809.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20083.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	4.85	7.8	4.56	5.63	6.55	8.47	14.28	5.92	5.7	6.03	14.07	8.77
Merged-chr16-35872566-3	chr16	35872469	35872669	+	809.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	11.71	15.59	13.12	13.67	16.77	17.56	7.97	5.21	8.65	18.08	14.07	7.52
Merged-chr1-161885905-2	chr1	161885805	161886005	+	809.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9223.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	14.54	14.34	18.25	12.47	1.23	5.02	0.66	2.89	20.06	10.04	8.04	11.59
Merged-chr8-125596378-2	chr8	125596292	125596492	+	809.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	11754.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	4.85	3.02	4.56	1.61	11.05	9.09	8.97	8.13	12.59	22.59	11.05	6.58
Merged-chr2-35346223-2	chr2	35346125	35346325	+	809.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9216.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.46	6.04	17.11	6.44	6.55	8.47	6.98	9.73	16.33	2.01	12.56	10.34
Merged-chr7-129403964-3	chr7	129403935	129404135	+	809.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146941.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	2.83	6.54	8.56	9.65	3.68	9.72	4.32	11.61	10.82	15.57	9.55	5.95
Merged-chr9-106474721-3	chr9	106474750	106474950	+	809.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001311150, exon 4 of 11)	exon (NM_001311150, exon 4 of 11)	2099.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	5.25	8.55	2.28	8.04	6.14	6.27	2.33	1.68	0.79	2.51	0.5	1.57
Merged-chr17-80768161-3	chr17	80768064	80768264	+	809.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40139.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.86	8.05	9.7	10.86	13.09	16.62	8.64	18.5	18.1	12.05	20.6	9.71
Merged-chr17-34180708-3	chr17	34180596	34180796	+	809.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6634.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	16.15	12.58	15.4	15.69	4.91	5.33	7.31	4.85	36.78	12.05	32.16	11.28
Merged-chr14-31206312-8	chr14	31206266	31206466	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 1 of 13)	CpG	460.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.46	6.79	9.7	4.42	7.36	5.96	7.97	4.74	10.03	10.04	9.55	6.58
Merged-chr3-98844002-1	chr3	98843902	98844102	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15792.0	NM_001304800	15492.0	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	3.23	3.52	0.57	6.03	6.55	7.53	22.26	14.27	6.1	6.53	2.01	3.45
Merged-chr7-99190086-2	chr7	99189993	99190193	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7380.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	8.08	10.31	9.13	8.45	23.73	15.37	10.96	15.34	7.87	5.02	4.52	4.7
Merged-chr4-41589928-2	chr4	41589826	41590026	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	20132.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	4.44	7.8	13.12	12.07	2.05	4.7	2.66	6.0	18.49	6.53	28.64	14.1
Merged-chr1-166146853-2	chr1	166146749	166146949	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	16628.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	7.67	3.52	9.13	4.83	9.0	16.62	7.31	18.39	12.39	7.53	13.06	5.33
Merged-chr5-112283719-3	chr5	112283635	112283835	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7044.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	9.29	9.06	2.28	8.45	13.5	5.64	7.64	8.66	15.74	7.03	16.58	16.6
Merged-chr7-143041685-3	chr7	143041589	143041789	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11061.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	8.88	8.55	12.55	10.46	16.77	13.48	9.97	15.28	11.6	14.06	21.1	11.59
Merged-chr3-88494112-2	chr3	88494008	88494208	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	-796.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	2.42	5.53	9.13	0.8	7.36	4.39	2.99	8.41	6.29	9.04	13.57	8.14
Merged-chr12-102368929-1	chr12	102368829	102369029	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70884.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.04	3.77	1.71	2.41	7.36	5.02	14.62	10.15	2.95	2.51	6.03	3.45
Merged-chr17-69397357-3	chr17	69397259	69397459	+	809.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13555.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	14.94	7.29	14.83	10.46	15.14	9.41	6.64	14.78	17.51	11.55	13.57	6.89
Merged-chr3-132756408-3	chr3	132756305	132756505	+	809.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	72261.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	12.11	9.06	10.84	19.71	4.5	11.29	9.3	20.13	24.98	10.54	12.56	11.28
Merged-chr5-147437653-2	chr5	147437522	147437722	+	809.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	7466.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	6.46	8.8	9.13	11.26	13.91	5.96	10.3	11.13	2.95	4.02	3.01	5.01
Merged-chr18-5819113-3	chr18	5819047	5819247	+	809.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	226500.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	10.9	6.04	9.13	8.85	17.18	13.48	14.62	9.28	29.9	13.56	14.07	11.59
Merged-chr1-85658706-3	chr1	85658598	85658798	+	809.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013673, intron 1 of 19)	intron (NM_013673, intron 1 of 19)	8710.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	15.34	12.83	12.55	21.72	13.91	10.66	7.64	12.2	14.16	15.06	12.56	8.77
Merged-chr11-31808104-3	chr11	31808054	31808254	+	809.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	16393.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	6.06	7.8	7.42	3.62	22.91	13.17	6.98	13.88	16.52	13.56	3.01	7.21
Merged-chr10-11319796-2	chr10	11319692	11319892	+	809.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23653.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	9.29	9.06	13.69	16.49	4.5	9.41	18.27	16.35	8.85	2.01	8.54	3.76
Merged-chr15-66279492-3	chr15	66279400	66279600	+	809.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	6724.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	9.69	11.32	20.54	20.11	16.36	17.25	18.6	21.64	8.85	10.04	18.09	3.45
Merged-chr11-6679221-2	chr11	6679117	6679317	+	809.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-18981.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	18.17	7.55	8.56	11.26	4.91	8.47	2.33	7.12	7.08	4.02	7.03	5.01
Merged-chr8-95009490-2	chr8	95009392	95009592	+	809.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018882, intron 10 of 13)	intron (NM_018882, intron 10 of 13)	-8200.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	19.79	13.08	19.4	22.93	9.0	7.53	7.64	4.74	7.47	7.53	8.04	11.9
Merged-chr5-147911907-2	chr5	147911811	147912011	+	809.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17096.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.42	4.02	5.13	3.22	10.23	3.14	7.64	7.74	17.7	9.54	21.61	10.02
Merged-chr19-12734210-3	chr19	12734099	12734299	+	809.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31433.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	11.71	4.28	12.55	7.64	7.36	6.27	2.66	17.55	17.7	9.54	26.63	10.96
Merged-chrX-106026795-3	chrX	106026706	106026906	+	809.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109757)	promoter-TSS (NM_001109757)	-418.0	NM_001109757	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	8.88	8.55	19.4	14.48	9.82	9.09	15.61	16.71	13.37	16.07	25.12	11.59
Merged-chr5-92308941-1	chr5	92308841	92309041	+	809.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172713, intron 1 of 21)	B3|SINE|B2	1083.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	2.02	1.51	2.85	1.21	5.73	9.72	5.98	7.15	2.16	1.0	0.0	6.89
Merged-chrX-159269310-1	chrX	159269210	159269410	+	809.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148945, intron 1 of 21)	intron (NM_148945, intron 1 of 21)	13528.0	NM_001346675	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	7.27	6.54	3.99	11.66	4.5	9.41	8.97	8.89	5.7	2.51	8.04	5.64
Merged-chr13-107923884-1	chr13	107923784	107923984	+	809.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33820.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.44	5.03	5.13	6.84	9.82	8.47	7.64	9.73	3.74	5.02	13.06	2.51
Merged-chr5-53437393-3	chr5	53437294	53437494	+	809.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118385.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.67	5.53	7.42	10.05	12.68	11.92	10.3	13.09	12.59	14.06	22.11	9.71
Merged-chr11-72461823-3	chr11	72461685	72461885	+	809.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 3 of 12)	L1ME3Cz|LINE|L1	13242.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	12.11	11.82	6.28	8.85	18.41	6.9	6.98	3.9	13.37	9.04	5.02	6.27
Merged-chr15-65106082-1	chr15	65105982	65106182	+	809.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-183786.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.0	2.26	2.28	1.61	11.45	5.64	5.31	10.77	1.97	2.51	0.0	1.88
Merged-chr19-45961897-3	chr19	45961778	45961978	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 8 of 25)	intron (NM_198296, intron 8 of 25)	-36259.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	5.65	8.3	8.56	12.87	10.64	13.17	11.63	15.03	19.47	35.65	14.57	19.42
Merged-chr18-69663248-3	chr18	69663131	69663331	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	MIR3|SINE|MIR	-262328.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	12.11	7.29	6.85	8.85	6.95	3.76	7.64	14.78	16.72	6.03	15.07	7.83
Merged-chr12-100006040-3	chr12	100005937	100006137	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	41538.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	17.77	8.3	10.27	9.25	15.55	10.98	15.28	10.29	17.7	13.56	16.08	9.08
Merged-chr3-81925137-3	chr3	81925046	81925246	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7455.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	10.5	10.82	7.99	6.44	9.82	6.27	3.99	9.42	14.16	7.03	14.57	3.45
Merged-chr7-16058026-2	chr7	16057909	16058109	+	809.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-13836.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.46	5.28	3.99	5.23	16.36	5.02	7.97	15.31	10.42	16.07	14.57	14.41
Merged-chr11-68446079-1	chr11	68445979	68446179	+	809.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	URR1B|DNA|hAT-Charlie	13954.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	1.62	4.02	7.99	1.21	11.86	11.29	6.98	9.03	8.26	5.52	8.54	2.51
Merged-chr3-31414141-3	chr3	31414126	31414326	+	809.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103907.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.44	3.77	0.57	2.01	20.05	11.6	26.24	17.78	16.52	6.53	16.08	5.01
Merged-chr11-16669949-3	chr11	16669847	16670047	+	809.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82256.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	11.31	8.55	6.28	11.26	11.86	12.86	14.95	18.81	13.77	11.05	29.65	10.96
Merged-chr18-64598132-2	chr18	64598036	64598236	+	809.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	62864.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	9.29	3.02	7.42	8.45	14.32	15.37	9.3	13.23	0.59	1.51	1.0	0.0
Merged-chr8-14816410-2	chr8	14816301	14816501	+	809.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	(TTGG)n|Simple_repeat|Simple_repeat	-72135.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.86	9.56	12.55	14.48	7.36	3.76	3.99	8.21	4.72	0.0	4.02	2.19
Merged-chr3-51327597-2	chr3	51327502	51327702	+	809.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	B3|SINE|B2	13042.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	5.65	6.04	5.7	7.24	11.86	7.53	2.99	5.41	16.92	24.6	4.52	14.1
Merged-chrX-6352257-2	chrX	6352159	6352359	+	809.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-31535.0	NM_009757	12155.0	Mm.42160	NM_009757	ENSMUSG00000023279	Bmp15	AU015375|AU018861|AU021453|Bmp-15|C86824|C87336|GDF-9B	bone morphogenetic protein 15	protein-coding	6.46	7.8	9.13	12.47	4.09	4.08	13.62	10.51	9.64	6.53	21.61	4.7
Merged-chr15-73078809-6	chr15	73078725	73078925	+	809.141663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11587.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	1.62	5.03	6.28	4.83	5.32	2.51	6.64	4.07	5.11	8.54	7.03	8.77
Merged-chr3-136672015-3	chr3	136671916	136672116	+	809.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	1950.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	6.46	6.54	9.7	16.49	5.32	3.14	7.64	8.75	15.93	13.56	14.07	15.66
Merged-chr15-100754274-2	chr15	100754172	100754372	+	809.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7475.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	16.96	14.84	11.98	5.63	4.09	5.02	1.99	3.25	16.92	24.6	13.06	8.77
Merged-chr5-142394812-2	chr5	142394718	142394918	+	809.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-6679.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	14.13	5.53	6.85	0.8	7.36	23.83	11.96	7.01	12.19	22.59	13.57	8.14
Merged-chr19-32989602-2	chr19	32989514	32989714	+	809.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-167498.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	4.04	3.52	12.55	17.29	7.77	9.41	2.99	9.34	5.9	5.52	11.05	7.21
Merged-chr3-136834036-3	chr3	136833925	136834125	+	809.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	163959.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	10.5	10.82	5.13	2.41	9.41	19.13	7.31	8.13	11.21	12.05	17.08	6.27
Merged-chr9-50593150-3	chr9	50593064	50593264	+	809.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10685.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	10.09	9.56	7.99	10.46	14.32	19.44	6.31	15.14	13.77	20.08	20.6	7.83
Merged-chr1-53845123-2	chr1	53845022	53845222	+	809.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	MTC|LTR|ERVL-MaLR	-4302.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	9.69	5.28	10.84	17.29	13.5	12.54	10.96	9.64	7.87	6.53	11.05	6.89
Merged-chr4-120986612-2	chr4	120986500	120986700	+	809.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-13278.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	5.25	5.79	5.7	10.86	7.36	8.78	1.0	7.99	15.14	14.56	12.06	5.33
Merged-chr9-69453603-3	chr9	69453510	69453710	+	809.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007585)	promoter-TSS (NM_007585)	-73.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	13.33	9.06	7.99	13.27	18.0	14.74	7.31	12.39	6.49	15.06	10.05	5.95
Merged-chr3-79559320-3	chr3	79559231	79559431	+	809.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	8348.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	13.33	7.8	7.42	4.02	4.91	16.62	17.61	17.19	10.82	14.06	16.08	7.83
Merged-chr6-98575482-3	chr6	98575406	98575606	+	809.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-232752.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	10.5	7.29	11.98	9.65	12.27	11.29	2.99	8.07	21.83	12.05	16.58	18.8
Merged-chr11-57686313-3	chr11	57686196	57686396	+	809.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-36802.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	7.67	12.58	20.54	12.47	17.18	12.86	9.63	16.71	11.41	11.05	15.58	10.02
Merged-chr15-8737498-3	chr15	8737389	8737589	+	809.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-26682.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	8.08	14.59	20.54	15.69	11.86	3.76	11.96	6.87	17.11	11.55	11.05	8.46
Merged-chr6-148533578-1	chr6	148533478	148533678	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80731.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.85	2.77	6.28	6.44	7.36	7.53	10.96	11.36	2.75	11.55	3.01	3.13
Merged-chr13-32312892-3	chr13	32312791	32312991	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	25653.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	12.11	10.31	6.85	12.47	9.41	11.92	8.3	18.2	16.13	21.09	19.09	10.34
Merged-chr7-29441967-1	chr7	29441867	29442067	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	LTR67B|LTR|ERVL	63493.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	3.23	2.01	10.27	12.87	6.14	8.78	2.99	9.11	5.11	4.02	8.04	9.08
Merged-chr2-117444499-1	chr2	117444399	117444599	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101622.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.23	1.76	6.85	9.65	6.55	5.02	5.98	8.1	2.95	6.03	12.06	8.14
Merged-chr1-87623047-1	chr1	87622947	87623147	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	2735.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	10.5	4.53	3.42	2.41	8.18	3.14	3.99	5.8	6.1	2.01	4.02	7.52
Merged-chr7-16399216-2	chr7	16399147	16399347	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1949.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.46	5.03	12.55	6.44	4.5	6.27	4.65	6.08	11.01	10.04	8.04	13.16
Merged-chr14-46848406-1	chr14	46848306	46848506	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026832, intron 4 of 5)	intron (NM_026832, intron 4 of 5)	16272.0	NM_001360455	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	1.62	4.78	10.84	2.41	7.77	4.7	11.29	8.92	1.18	0.0	1.51	0.63
Merged-chr16-43390558-1	chr16	43390458	43390658	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	29638.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	2.77	1.71	12.07	2.45	1.88	10.63	4.49	5.51	5.52	4.52	3.76
Merged-chr18-79271604-1	chr18	79271504	79271704	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-162213.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	5.25	5.28	5.7	5.23	4.09	3.14	7.31	6.31	6.69	5.02	12.06	10.65
Merged-chr2-167385523-1	chr2	167385423	167385623	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36187.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	4.85	3.02	7.99	2.01	9.82	11.29	3.99	2.83	6.29	3.51	4.02	0.63
Merged-chr3-54102396-2	chr3	54102270	54102470	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53687.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	1.62	0.5	1.14	0.8	2.05	10.66	1.99	5.1	31.47	21.59	32.66	14.1
Merged-chr2-132606304-1	chr2	132606204	132606404	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033469, intron 2 of 3)	B1_Mur1|SINE|Alu	8108.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	2.42	4.78	4.56	4.83	7.77	6.27	2.99	6.31	3.15	3.01	6.03	3.45
Merged-chr3-51778473-2	chr3	51778364	51778564	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	117285.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	20.59	19.62	8.56	8.85	7.77	16.93	8.64	12.39	12.98	5.52	7.03	4.07
Merged-chr10-111178105-4	chr10	111178011	111178211	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	13309.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.88	5.28	10.84	10.46	9.82	3.14	16.28	14.19	4.92	4.52	5.53	10.96
Merged-chr16-43363897-1	chr16	43363797	43363997	+	809.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	56299.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.25	7.04	3.99	5.23	5.73	7.53	4.65	4.29	7.87	12.55	14.57	5.95
Merged-chr2-60124411-1	chr2	60124311	60124511	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	1329.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	10.5	9.06	1.71	2.41	4.09	10.98	5.31	3.2	10.82	6.03	9.55	5.01
Merged-chr11-88599462-1	chr11	88599362	88599562	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	-19789.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	6.06	2.01	10.27	7.64	5.73	9.41	4.98	14.61	6.1	1.0	3.01	5.01
Merged-chr4-9658049-3	chr4	9657981	9658181	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11081.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.46	11.32	15.97	20.51	8.59	7.84	2.33	4.4	16.33	14.06	9.55	13.78
Merged-chr15-97422766-2	chr15	97422678	97422878	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175491.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	12.11	7.55	6.85	10.05	11.05	7.84	8.3	6.34	13.37	2.51	9.04	10.34
Merged-chr14-46130017-1	chr14	46129917	46130117	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45990.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	1.62	2.52	3.42	2.41	9.82	3.76	3.99	5.47	0.39	0.5	0.0	0.0
Merged-chr10-84366163-1	chr10	84366063	84366263	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74308.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	8.88	2.26	3.42	3.22	9.0	1.25	6.98	2.33	1.57	6.03	2.01	4.7
Merged-chr2-113305570-2	chr2	113305474	113305674	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	19842.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	5.65	7.8	11.98	8.45	4.09	9.41	4.65	11.07	8.26	8.03	12.06	5.01
Merged-chr10-34281582-1	chr10	34281482	34281682	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-608.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	6.06	3.77	1.71	5.63	6.95	2.82	4.65	6.31	5.7	13.05	12.56	5.01
Merged-chr5-43293315-3	chr5	43293208	43293408	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57954.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	8.88	4.02	10.27	12.47	11.05	6.9	8.64	14.55	15.54	18.08	6.53	14.72
Merged-chr8-121861533-1	chr8	121861433	121861633	+	809.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31964.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	5.65	2.01	9.7	4.42	2.86	4.7	2.66	6.31	10.82	7.53	11.05	5.01
Merged-chr17-47182298-1	chr17	47182198	47182398	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	41356.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	6.06	5.53	15.4	7.24	13.5	7.53	7.31	13.88	6.1	1.51	9.55	6.27
Merged-chr1-156860583-1	chr1	156860483	156860683	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028333, exon 5 of 5)	exon (NM_028333, exon 5 of 5)	21560.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	5.65	2.01	3.99	3.22	4.09	8.78	3.32	6.79	3.34	7.53	7.03	1.88
Merged-chr13-119601502-2	chr13	119601401	119601601	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	B1F1|SINE|Alu	-22318.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	6.06	4.28	0.0	4.02	15.14	7.21	11.96	2.94	4.92	12.05	7.54	16.29
Merged-chr8-104442506-2	chr8	104442396	104442596	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013380, exon 2 of 13)	exon (NM_001013380, exon 2 of 13)	551.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	12.11	11.57	3.99	10.46	14.73	13.48	24.58	13.12	9.44	10.54	10.05	11.59
Merged-chr15-67636444-1	chr15	67636344	67636544	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	409675.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.63	4.78	1.14	2.41	9.41	12.86	7.31	9.36	6.29	13.05	4.52	1.57
Merged-chr11-50240407-1	chr11	50240307	50240507	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1875.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	2.83	0.5	0.0	1.61	4.5	2.51	4.32	4.18	2.95	1.51	2.01	1.57
Merged-chrX-166663282-3	chrX	166663175	166663375	+	808.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046015, intron 2 of 8)	intron (NR_046015, intron 2 of 8)	1250.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	6.86	5.79	9.13	11.66	12.27	17.56	6.64	8.75	5.7	4.52	15.58	10.02
Merged-chr5-135188159-2	chr5	135188067	135188267	+	808.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011714, intron 1 of 18)	CpG	844.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	6.46	6.54	6.85	8.04	6.95	9.41	8.3	11.78	15.34	3.01	14.07	5.95
Merged-chr9-63044289-2	chr9	63044209	63044409	+	808.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-63430.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	2.02	4.02	9.7	4.83	11.05	12.86	6.31	10.37	14.16	4.52	22.11	8.14
Merged-chr14-120276511-3	chr14	120276411	120276611	+	808.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	842.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.67	7.55	6.28	12.47	6.55	5.33	7.97	15.87	16.52	13.56	24.62	11.9
Merged-chr3-79864981-3	chr3	79864873	79865073	+	808.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20957.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	2.42	1.01	8.56	8.85	8.59	5.02	7.31	15.11	29.11	19.58	53.77	24.12
Merged-chr13-51842996-3	chr13	51842888	51843088	+	808.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3687.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	8.48	3.52	10.27	9.25	9.0	12.86	7.31	13.79	14.55	9.04	14.07	12.22
Merged-chr1-64127006-2	chr1	64126899	64127099	+	808.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5610.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	2.02	5.03	13.69	4.83	8.18	13.48	13.95	16.26	11.01	5.02	9.55	4.39
Merged-chr2-173770852-2	chr2	173770767	173770967	+	808.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	33296.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.42	2.26	2.28	6.84	8.18	13.48	7.97	8.19	9.05	11.55	23.11	13.78
Merged-chr12-113144603-2	chr12	113144495	113144695	+	808.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024223, intron 5 of 6)	intron (NM_024223, intron 5 of 6)	3990.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	6.06	10.06	6.85	9.25	7.36	7.53	5.65	7.43	9.24	6.53	8.04	5.95
Merged-chr15-63665706-2	chr15	63665609	63665809	+	808.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143030.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	1.62	3.52	2.28	7.24	9.0	28.54	11.29	24.59	17.9	10.04	12.56	10.96
Merged-chr10-77543354-3	chr10	77543259	77543459	+	808.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 3 of 15)	MTE2b|LTR|ERVL-MaLR	13011.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	8.88	12.07	13.69	5.23	12.68	13.17	6.98	15.31	11.6	11.55	14.07	6.89
Merged-chr6-34966356-3	chr6	34966262	34966462	+	808.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	11637.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	10.5	6.04	2.85	7.24	12.68	17.87	8.3	12.87	18.29	5.52	18.59	6.89
Merged-chr8-105714373-3	chr8	105714270	105714470	+	808.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6081.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	10.9	11.07	14.26	2.82	11.05	4.7	4.65	8.69	7.67	15.06	11.05	12.53
Merged-chr3-101594481-3	chr3	101594367	101594567	+	808.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 2 of 22)	intron (NM_144900, intron 2 of 22)	10240.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	14.54	11.07	15.97	8.85	5.73	7.84	4.98	14.97	9.24	8.54	22.11	11.59
Merged-chr18-34259335-3	chr18	34259230	34259430	+	808.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360979, intron 1 of 15)	B3A|SINE|B2	11636.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	13.33	9.06	9.7	11.26	6.95	16.62	4.98	15.08	24.59	12.55	26.63	10.02
Merged-chr10-13201068-2	chr10	13200975	13201175	+	808.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-7938.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	2.02	3.52	5.13	9.65	9.82	8.78	7.97	9.0	14.55	13.56	36.18	8.14
Merged-chr4-105268534-3	chr4	105268428	105268628	+	808.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111181.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	10.09	10.31	13.12	11.26	6.14	17.25	3.32	14.3	14.95	17.57	11.56	8.14
Merged-chr15-78351821-3	chr15	78351716	78351916	+	808.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007780)	TTS (NM_007780)	3217.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	4.85	4.28	15.4	12.07	17.59	6.59	1.99	6.48	19.28	22.09	12.06	19.42
Merged-chr2-164792556-3	chr2	164792460	164792660	+	808.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133240)	TTS (NM_133240)	6539.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	8.88	8.05	2.85	17.29	6.95	6.59	6.64	13.01	17.51	8.03	20.6	11.9
Merged-chr10-81319672-1	chr10	81319572	81319772	+	808.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1431.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	6.06	6.04	2.28	6.03	11.86	6.59	10.3	3.45	6.49	3.01	2.01	10.02
Merged-chr17-23706441-3	chr17	23706338	23706538	+	808.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19898.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	11.71	9.56	11.98	11.66	6.95	17.25	3.99	8.36	13.77	13.56	11.56	5.95
Merged-chr12-84855307-3	chr12	84855209	84855409	+	808.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 2 of 34)	intron (NM_013589, intron 2 of 34)	-20493.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	8.08	4.53	10.84	17.7	31.91	23.2	64.44	40.35	10.82	12.55	34.67	12.22
Merged-chr11-8634824-3	chr11	8634733	8634933	+	808.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	29702.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.85	7.04	14.83	5.63	13.5	16.31	10.63	6.98	11.41	12.55	10.05	4.39
Merged-chr15-78608999-3	chr15	78608900	78609100	+	808.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 6 of 12)	MIRb|SINE|MIR	11953.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	11.31	1.26	9.7	11.26	11.45	8.47	12.62	9.14	26.16	3.51	16.08	16.29
Merged-chr1-180318645-3	chr1	180318548	180318748	+	808.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11828.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	7.67	9.81	11.41	4.83	7.36	10.35	9.63	9.34	14.55	9.54	17.59	10.34
Merged-chr4-145210776-3	chr4	145210680	145210880	+	808.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15775.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	14.13	4.78	0.57	18.5	6.55	7.21	13.95	13.51	19.67	9.04	10.05	7.83
Merged-chr12-84698736-3	chr12	84698626	84698826	+	808.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033334)	promoter-TSS (NM_001033334)	81.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	11.71	12.83	7.42	6.03	10.64	9.72	20.26	8.75	14.95	10.54	15.58	6.89
Merged-chrX-75874470-1	chrX	75874370	75874570	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_145629, exon 1 of 16)	5' UTR (NM_145629, exon 1 of 16)	104.0	NM_145629	102866.0	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	4.85	1.76	7.42	4.02	7.36	9.72	7.64	8.86	5.11	6.03	9.04	5.33
Merged-chr11-108011260-1	chr11	108011160	108011360	+	808.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 8 of 16)	intron (NM_011101, intron 8 of 16)	14412.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	4.44	11.07	3.99	6.44	4.5	8.47	1.0	3.28	15.74	12.55	16.58	9.08
Merged-chr9-107231804-3	chr9	107231734	107231934	+	808.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153413)	promoter-TSS (NM_153413)	75.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	8.88	7.04	6.28	9.65	6.55	6.27	12.29	7.82	10.62	11.05	8.54	6.27
Merged-chr2-75964512-4	chr2	75964309	75964509	+	808.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAAAA)n|Simple_repeat|Simple_repeat	13770.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	4.85	0.0	3.42	4.42	1.64	3.45	4.32	4.71	1.97	1.0	8.54	1.57
Merged-chr5-43232049-1	chr5	43231949	43232149	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1414.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.63	5.28	11.41	4.02	6.55	9.41	5.98	13.26	3.93	9.04	9.55	8.46
Merged-chr1-162006285-1	chr1	162006185	162006385	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040562, intron 2 of 2)	intron (NR_040562, intron 2 of 2)	1316.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.65	2.77	5.13	1.61	9.0	10.98	12.95	11.41	8.46	14.56	7.03	4.07
Merged-chr17-7887277-1	chr17	7887177	7887377	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-38723.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.44	1.51	9.13	3.62	6.95	6.27	10.3	8.55	8.06	7.03	14.57	2.19
Merged-chr1-171437493-3	chr1	171437387	171437587	+	808.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151523)	promoter-TSS (NR_151523)	-74.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	21.0	10.06	10.27	5.63	21.68	6.9	4.32	12.11	18.88	22.09	12.06	7.83
Merged-chr6-127582137-3	chr6	127582049	127582249	+	808.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4174.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	6.06	3.77	19.97	6.03	16.77	6.9	4.65	16.43	13.77	9.04	22.11	8.77
Merged-chr17-48267768-3	chr17	48267668	48267868	+	808.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	3473.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	15.34	14.84	7.42	9.25	21.68	24.15	5.31	12.14	24.19	18.08	13.06	6.58
Merged-chr15-84968911-3	chr15	84968805	84969005	+	808.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	-17282.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	3.23	6.29	5.13	8.04	9.41	12.54	22.59	22.49	18.49	6.53	16.08	12.53
Merged-chr4-105158272-3	chr4	105158126	105158326	+	808.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	CpG	879.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.25	12.58	9.7	12.47	6.14	5.96	8.97	8.36	5.11	9.54	11.56	3.76
Merged-chr5-99218389-5	chr5	99218245	99218445	+	808.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	34582.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	11.31	8.55	0.0	0.8	2.45	4.39	0.66	5.36	11.8	13.56	3.52	5.01
Merged-chr13-89883760-1	chr13	89883660	89883860	+	808.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-141248.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.62	5.79	4.56	8.85	9.82	8.15	15.94	9.73	8.65	10.54	8.54	5.01
Merged-chr11-16629826-3	chr11	16629709	16629909	+	808.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-121325.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	7.27	7.04	7.99	13.67	9.0	3.76	10.3	14.69	9.44	1.0	7.03	5.95
Merged-chr16-34416954-2	chr16	34416859	34417059	+	808.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177357, intron 1 of 59)	intron (NM_177357, intron 1 of 59)	97068.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	7.27	8.55	6.85	18.5	14.73	4.39	13.29	15.45	3.15	4.52	2.01	0.94
Merged-chr5-105500491-2	chr5	105500383	105500583	+	808.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18988.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	9.29	7.8	10.84	8.04	13.09	7.53	11.29	11.07	0.79	2.01	6.03	2.51
Merged-chr11-53768986-3	chr11	53768877	53769077	+	808.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1037.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	8.88	9.31	18.83	6.84	14.73	9.72	7.64	6.73	16.33	16.57	9.55	15.35
Merged-chr5-12206192-3	chr5	12206090	12206290	+	808.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176976.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	6.06	7.04	1.14	11.66	6.55	9.41	13.95	26.97	8.26	12.05	15.58	11.59
Merged-chr17-63871840-3	chr17	63871732	63871932	+	808.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	RMER1B|Other|Other	-6234.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.65	10.06	13.69	9.65	7.36	6.59	6.98	15.36	11.01	10.54	9.55	12.84
Merged-chr11-32571296-3	chr11	32571220	32571420	+	808.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	38054.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	15.34	6.79	5.7	11.66	17.59	14.11	14.62	26.86	10.82	14.56	9.04	4.7
Merged-chr9-61983424-3	chr9	61983319	61983519	+	808.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	-36620.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	10.5	4.28	8.56	12.47	22.91	22.26	6.64	25.01	20.06	12.05	24.12	6.27
Merged-chr7-27673745-4	chr7	27673647	27673847	+	808.508301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198417)	promoter-TSS (NM_198417)	834.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	12.11	14.09	15.4	8.45	17.59	23.52	7.97	14.07	21.24	11.05	10.05	7.52
Merged-chr2-58920297-1	chr2	58920197	58920397	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	165113.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.85	3.27	5.13	11.26	6.14	3.45	9.3	9.73	10.23	5.52	8.54	11.9
Merged-chr11-31784495-1	chr11	31784395	31784595	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	40052.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	1.21	1.51	3.99	0.0	9.0	10.35	10.96	24.17	0.2	1.51	2.51	0.0
Merged-chr11-119390984-1	chr11	119390884	119391084	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_035453)	TTS (NR_035453)	512.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	7.27	2.77	3.42	4.83	7.77	9.09	8.64	7.23	11.21	12.05	6.53	5.95
Merged-chr8-71660882-3	chr8	71660781	71660981	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 8 of 41)	intron (NM_001029873, intron 8 of 41)	10876.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	5.65	10.56	5.13	11.66	18.0	17.56	7.97	8.41	8.46	10.54	12.06	12.84
Merged-chr17-22417726-2	chr17	22417595	22417795	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6507.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	4.85	7.29	4.56	1.21	5.73	8.78	6.31	6.56	13.18	13.56	7.54	5.95
Merged-chr6-34479190-1	chr6	34479090	34479290	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	2834.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	4.04	1.51	4.56	3.62	13.09	5.96	7.64	8.5	1.97	2.01	11.05	4.07
Merged-chrX-142718111-1	chrX	142718011	142718211	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	-20889.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	3.23	2.01	10.27	0.8	10.64	10.03	5.31	11.05	5.11	3.51	8.04	6.27
Merged-chr11-83125108-2	chr11	83125027	83125227	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8307.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	6.06	4.78	8.56	7.24	18.0	17.56	15.61	10.93	7.08	9.54	9.04	3.45
Merged-chr11-115161167-1	chr11	115161067	115161267	+	808.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-2174.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	6.86	10.06	5.7	6.44	4.5	4.39	9.63	2.83	11.01	10.54	9.55	8.46
Merged-chr9-124143165-2	chr9	124143061	124143261	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	21618.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	5.65	2.52	3.42	3.62	10.23	2.2	2.99	8.83	9.44	14.56	7.03	10.34
Merged-chr9-111289700-2	chr9	111289599	111289799	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	17854.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	8.08	2.77	0.57	4.83	8.59	13.8	5.98	2.27	21.44	21.09	28.14	14.1
Merged-chr16-91764223-2	chr16	91764116	91764316	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	34845.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	14.94	6.79	6.28	8.04	13.5	10.98	4.65	7.88	9.05	10.54	7.54	5.95
Merged-chr7-132799899-1	chr7	132799799	132799999	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-12964.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.81	2.77	9.7	5.23	9.82	8.15	8.64	23.16	0.79	2.51	2.51	4.07
Merged-chr2-132113822-1	chr2	132113722	132113922	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	31286.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.86	3.77	15.4	3.22	6.55	7.84	1.0	6.79	10.62	3.01	8.54	4.39
Merged-chrX-93690923-1	chrX	93690823	93691023	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_211138, intron 1 of 7)	intron (NM_211138, intron 1 of 7)	15811.0	NM_211138	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	3.23	2.01	8.56	8.04	11.86	3.14	5.31	10.99	2.16	2.01	3.01	5.33
Merged-chr7-115063088-2	chr7	115063002	115063202	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111828.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.65	3.27	14.26	6.03	36.82	29.79	30.56	46.07	3.74	5.02	13.06	3.76
Merged-chr10-12612597-1	chr10	12612497	12612697	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	249138.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.44	7.29	11.41	2.01	8.59	10.98	10.96	16.43	8.46	6.53	15.07	5.01
Merged-chr8-122022440-2	chr8	122022348	122022548	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016812, intron 12 of 13)	intron (NM_016812, intron 12 of 13)	44424.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	4.85	5.03	13.69	24.13	11.05	11.92	5.31	11.58	3.54	5.52	6.03	5.95
Merged-chr7-137314510-2	chr7	137314405	137314605	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-60.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	10.09	4.78	2.28	6.44	4.5	5.96	3.65	9.59	6.29	12.05	13.57	2.19
Merged-chr11-4199047-2	chr11	4198954	4199154	+	808.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	MIRc|SINE|MIR	12221.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	4.04	8.05	10.27	6.44	6.55	5.33	8.64	9.34	13.37	13.05	16.08	13.16
Merged-chr18-78021440-3	chr18	78021339	78021539	+	808.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 36 of 43)	intron (NM_001195633, intron 36 of 43)	35829.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	4.04	4.02	13.12	9.25	8.59	14.42	26.57	25.51	20.85	14.06	44.22	23.81
Merged-chr18-56469378-3	chr18	56469245	56469445	+	808.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	37213.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.42	7.8	13.12	5.63	10.23	2.51	6.31	7.65	5.51	2.01	6.03	8.77
Merged-chr1-166459089-3	chr1	166458993	166459193	+	808.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3605.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	9.69	5.28	9.13	8.45	11.86	26.34	19.27	36.2	16.52	5.52	27.64	24.43
Merged-chr8-104099539-3	chr8	104099442	104099642	+	808.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-2083.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	6.86	7.29	4.56	12.87	11.86	12.23	5.31	8.83	8.06	12.55	14.57	8.46
Merged-chr8-122465128-3	chr8	122465053	122465253	+	808.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033142)	TTS (NM_001033142)	-4461.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	4.85	7.04	22.25	10.46	5.73	7.84	12.62	12.14	15.74	22.09	46.73	16.6
Merged-chrX-167333062-3	chrX	167332952	167333152	+	808.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2481.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	10.09	5.03	1.14	10.05	6.55	10.35	11.29	12.25	10.23	6.53	17.59	12.22
Merged-chr7-35121034-5	chr7	35120851	35121051	+	808.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001287523, exon 1 of 1)	3' UTR (NM_001287523, exon 1 of 1)	1658.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.44	4.28	3.42	7.64	14.73	11.29	10.63	11.83	8.85	6.53	22.11	12.84
Merged-chr6-21955496-3	chr6	21955402	21955602	+	808.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	5887.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	12.11	9.06	8.56	20.51	10.64	10.03	10.96	20.1	18.49	16.07	18.59	9.08
Merged-chr11-71849609-3	chr11	71849473	71849673	+	808.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	90549.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	10.5	6.29	7.99	26.95	8.18	10.98	23.92	24.93	13.37	4.52	14.57	9.08
Merged-chrX-36328493-2	chrX	36328391	36328591	+	808.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028894)	promoter-TSS (NM_028894)	82.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	4.04	5.79	6.28	8.85	10.64	7.21	11.96	6.7	5.31	1.0	11.05	10.65
Merged-chr17-43061459-2	chr17	43061356	43061556	+	808.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44901.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.27	7.55	6.28	12.07	15.55	6.27	10.63	12.98	1.57	3.01	2.51	2.51
Merged-chr13-35955995-2	chr13	35955892	35956092	+	808.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11914.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	11.71	10.56	11.41	9.65	11.45	8.78	11.96	9.0	2.75	5.52	3.01	9.4
Merged-chr15-34775918-2	chr15	34775823	34776023	+	808.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61432.0	NM_181317	16539.0	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	4.85	5.28	2.85	10.46	6.55	5.33	3.99	10.85	11.21	7.53	16.58	11.28
Merged-chr1-170510753-1	chr1	170510653	170510853	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 2 of 9)	MIRc|SINE|MIR	46357.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	2.26	1.14	2.01	7.77	5.02	7.31	11.41	7.47	2.51	8.04	6.27
Merged-chr8-46142841-3	chr8	46142731	46142931	+	808.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18685.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	6.06	7.8	11.41	6.84	6.55	4.39	3.99	10.54	13.18	6.53	14.57	1.57
Merged-chr16-15862401-1	chr16	15862301	15862501	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029354, exon 2 of 3)	exon (NM_029354, exon 2 of 3)	968.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	3.23	3.52	4.56	2.82	4.5	8.15	5.98	6.2	4.33	5.02	5.02	10.65
Merged-chr3-93520325-1	chr3	93520225	93520425	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	-171.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	3.63	2.77	4.56	0.8	6.95	7.53	7.97	9.87	1.77	5.02	1.51	3.45
Merged-chr2-90501905-1	chr2	90501805	90502005	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-22731.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.23	1.76	6.85	3.22	9.0	9.09	1.99	7.32	4.13	5.02	3.52	0.63
Merged-chr11-69365095-3	chr11	69365011	69365211	+	808.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	4315.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	20.59	7.04	10.27	11.66	24.55	9.41	7.97	11.58	23.41	13.56	16.08	12.53
Merged-chr14-123837579-1	chr14	123837479	123837679	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145467, intron 3 of 10)	intron (NM_145467, intron 3 of 10)	-150056.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	6.06	4.28	1.71	4.83	10.23	6.9	12.62	19.04	11.21	6.53	7.54	6.27
Merged-chr9-118723118-1	chr9	118723018	118723218	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	11426.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.44	3.02	5.7	2.01	4.91	9.41	9.3	7.18	5.31	5.52	9.04	3.13
Merged-chr4-99224506-3	chr4	99224406	99224606	+	808.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001145967, exon 7 of 11)	exon (NM_001145967, exon 7 of 11)	30359.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.06	7.04	1.14	9.65	13.09	5.96	4.98	9.39	16.33	9.54	18.09	14.1
Merged-chr4-154856306-3	chr4	154856204	154856404	+	808.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172878, exon 1 of 7)	5' UTR (NM_172878, exon 1 of 7)	104.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	21.8	8.8	5.13	14.08	18.41	43.59	22.26	32.58	9.83	4.52	13.57	7.21
Merged-chr5-135705527-3	chr5	135705445	135705645	+	808.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	B4A|SINE|B4	16400.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	9.69	3.77	10.84	9.65	6.55	5.96	18.6	30.42	12.78	12.05	18.59	18.48
Merged-chr14-34662440-2	chr14	34662342	34662542	+	808.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8868.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	6.46	5.79	4.56	5.23	12.27	4.39	7.64	7.51	12.59	3.51	13.06	8.77
Merged-chr10-117983511-1	chr10	117983411	117983611	+	808.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	58052.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	2.42	5.79	4.56	5.23	7.77	11.29	4.65	9.73	6.1	2.01	11.05	5.01
Merged-chr9-107551618-3	chr9	107551607	107551807	+	808.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053253)	TTS (NM_053253)	152.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	4.44	10.31	9.13	12.47	13.5	8.78	5.98	10.74	4.72	13.56	5.53	7.52
Merged-chr10-68844854-3	chr10	68844758	68844958	+	808.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121112.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.27	7.04	14.83	11.66	9.0	8.78	19.93	12.31	14.75	24.6	30.65	32.89
Merged-chr16-35918834-3	chr16	35918729	35918929	+	808.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19641.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	6.86	9.81	14.83	9.65	10.64	14.42	9.63	9.03	15.54	11.55	10.05	6.27
Merged-chr19-55688749-3	chr19	55688666	55688866	+	808.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13438.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	9.29	8.05	16.54	8.04	12.68	7.21	5.98	7.21	19.87	9.04	15.58	12.53
Merged-chr1-77281943-1	chr1	77281843	77282043	+	808.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	214825.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.25	5.28	6.28	2.01	7.36	8.15	9.3	9.7	0.0	0.0	2.01	2.82
Merged-chr7-123399065-3	chr7	123398979	123399179	+	808.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-8738.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	18.57	8.05	11.98	3.62	6.55	10.03	1.33	7.96	14.16	3.51	7.03	12.22
Merged-chr13-74040151-2	chr13	74040051	74040251	+	808.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028959, exon 11 of 12)	exon (NM_028959, exon 11 of 12)	22134.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	15.75	5.53	10.84	4.83	12.68	10.98	7.31	14.61	8.06	9.54	7.54	8.14
Merged-chr1-175626263-2	chr1	175626267	175626467	+	808.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-732.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	1.21	3.52	3.99	0.8	4.09	1.25	6.31	5.05	3.15	2.51	7.54	2.51
Merged-chr1-151927612-2	chr1	151927504	151927704	+	808.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	B1_Mur1|SINE|Alu	162716.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	13.33	11.07	24.53	22.93	4.91	5.96	4.98	5.1	2.56	6.03	2.51	4.7
Merged-chr8-86870936-2	chr8	86870834	86871034	+	808.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	14324.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	10.9	9.06	18.83	15.28	9.82	6.27	3.32	5.8	9.64	6.03	9.04	4.07
Merged-chr19-4398098-3	chr19	4398071	4398271	+	808.161926	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1094.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	13.73	8.05	4.56	4.02	8.59	10.35	7.31	4.71	8.65	9.54	4.52	10.34
Merged-chr8-33606600-4	chr8	33606468	33606668	+	808.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	RMER6B|LTR|ERVK	6947.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	6.86	4.53	7.99	3.62	6.95	8.78	5.98	10.46	13.18	11.05	20.6	9.08
Merged-chr10-120202371-4	chr10	120202314	120202514	+	808.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	-284.0	NM_001359184	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.44	9.31	3.99	1.61	6.14	17.25	11.63	7.54	12.59	11.05	13.57	7.83
Merged-chr11-69935691-3	chr11	69935542	69935742	+	808.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347634)	promoter-TSS (NM_001347634)	-257.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	13.33	11.07	1.71	11.66	10.64	7.84	6.64	8.02	11.41	12.05	11.05	8.77
Merged-chr14-14349720-6	chr14	14349621	14349821	+	808.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 5 of 11)	intron (NM_008369, intron 5 of 11)	3226.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	12.52	11.82	9.7	8.85	6.14	5.96	5.65	7.01	11.21	9.54	8.04	7.52
Merged-chr17-81616602-3	chr17	81616513	81616713	+	808.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	121774.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	8.88	2.01	11.41	12.07	14.73	10.35	11.29	10.57	11.01	11.55	6.03	3.45
Merged-chr13-3742519-2	chr13	3742384	3742584	+	808.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61834.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.44	2.77	10.84	11.26	10.23	4.39	6.31	12.53	13.37	10.04	10.05	7.52
Merged-chr18-84590381-3	chr18	84590247	84590447	+	808.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-843.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	10.5	8.3	15.4	9.25	5.32	10.98	11.29	11.69	9.83	7.53	8.04	9.4
Merged-chr13-23538447-3	chr13	23538344	23538544	+	808.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	3026.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	8.08	5.03	7.42	12.87	13.5	6.27	9.3	11.66	19.28	14.56	14.07	13.16
Merged-chr12-25389295-3	chr12	25389228	25389428	+	808.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	260154.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.11	7.29	13.69	5.63	10.23	17.87	15.28	21.53	10.42	8.03	19.09	6.58
Merged-chr7-89500070-1	chr7	89499970	89500170	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17516.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	6.46	3.77	6.28	3.62	6.55	11.6	4.65	10.32	1.97	4.02	5.02	1.57
Merged-chr18-11833001-3	chr18	11832893	11833093	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	-6281.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	14.54	5.03	10.27	15.69	9.0	3.76	9.3	13.99	10.42	8.03	9.04	4.39
Merged-chr8-128590505-1	chr8	128590405	128590605	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-95149.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	9.29	5.28	11.41	4.83	9.41	4.39	7.31	10.15	6.88	4.52	9.04	3.13
Merged-chr17-79442790-1	chr17	79442690	79442890	+	808.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35095.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.08	21.05	13.05	13.57	11.59
Merged-chr9-37301907-1	chr9	37301807	37302007	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081429, intron 12 of 15)	intron (NM_001081429, intron 12 of 15)	-46169.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	8.08	3.27	5.7	3.62	8.18	2.51	0.66	9.06	2.75	0.0	7.54	3.45
Merged-chr15-13384931-1	chr15	13384831	13385031	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-211256.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.21	1.51	0.0	2.41	7.36	2.82	7.64	13.57	5.9	3.01	11.05	5.01
Merged-chr2-60283138-1	chr2	60283038	60283238	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1346.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.23	5.03	5.7	2.82	4.09	7.84	6.98	7.37	6.1	0.0	10.55	2.19
Merged-chr9-45121944-1	chr9	45121844	45122044	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4068.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	4.04	5.28	5.7	2.41	12.68	8.78	1.0	5.13	7.67	9.54	4.52	3.76
Merged-chr15-87624147-1	chr15	87624047	87624247	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252310, intron 1 of 3)	CpG	-1083.0	NM_134096	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	4.04	6.29	2.85	4.02	4.09	7.84	3.32	8.92	0.2	1.0	0.0	1.57
Merged-chr7-104287621-1	chr7	104287521	104287721	+	808.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310602, intron 1 of 7)	URR1A|DNA|hAT-Charlie	485.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	18.29	12.55	13.57	2.82
Merged-chr17-72890292-2	chr17	72890199	72890399	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28006.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	7.27	5.03	11.41	5.23	7.36	8.78	4.98	4.4	15.14	6.53	16.08	3.45
Merged-chr15-50361543-1	chr15	50361443	50361643	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	527506.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.48	5.53	10.84	12.87	19.23	5.33	7.64	10.57	12.19	20.59	18.59	7.83
Merged-chr2-178013492-2	chr2	178013404	178013604	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-9780.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	2.42	3.02	2.28	5.63	4.09	11.92	9.3	5.16	16.13	12.05	12.06	7.21
Merged-chr2-170055693-1	chr2	170055593	170055793	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15085.0	NR_033634	100043910.0	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	6.86	5.28	5.13	11.26	6.95	10.35	7.97	7.26	4.33	7.53	7.54	4.07
Merged-chr12-108931938-1	chr12	108931838	108932038	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37666.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.81	0.5	0.0	2.82	9.0	2.51	9.63	17.97	4.92	2.01	1.0	4.07
Merged-chr11-22286511-2	chr11	22286385	22286585	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252515, intron 1 of 24)	intron (NM_001252515, intron 1 of 24)	310.0	NM_153078	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	10.09	8.3	5.13	6.44	10.23	8.78	7.64	6.08	6.49	8.54	9.04	6.27
Merged-chr1-64358529-1	chr1	64358429	64358629	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-174275.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.44	2.26	4.56	10.05	4.09	5.96	6.64	11.38	0.98	0.0	4.02	0.0
Merged-chr6-94269380-1	chr6	94269280	94269480	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	MTC|LTR|ERVL-MaLR	14537.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.83	1.01	5.7	6.44	5.73	6.59	15.28	20.38	0.79	1.0	2.51	3.13
Merged-chr2-165015027-1	chr2	165014927	165015127	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144892, intron 2 of 7)	intron (NM_144892, intron 2 of 7)	19752.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	5.65	3.52	2.28	3.22	4.5	6.59	1.0	5.21	9.24	3.51	5.02	5.95
Merged-chr2-129504481-2	chr2	129504390	129504590	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	32112.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.86	10.56	10.27	2.01	8.18	18.19	4.65	2.83	18.1	18.58	4.02	9.71
Merged-chr17-9773937-2	chr17	9773838	9774038	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045433, intron 2 of 3)	intron (NR_045433, intron 2 of 3)	1928.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	10.9	4.53	11.98	3.62	17.59	15.99	28.57	32.94	3.74	1.51	4.52	1.25
Merged-chr2-126427833-1	chr2	126427733	126427933	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 7 of 27)	intron (NM_001359975, intron 7 of 27)	63720.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	2.83	3.52	1.14	3.62	1.23	7.84	2.66	6.2	4.92	7.03	6.03	3.76
Merged-chr7-47007387-2	chr7	47007293	47007493	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175318, intron 1 of 5)	intron (NM_175318, intron 1 of 5)	1021.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	3.23	6.04	10.84	6.44	6.95	9.09	6.64	13.23	9.83	6.53	15.58	9.08
Merged-chr15-27960661-2	chr15	27960552	27960752	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	ORR1D2|LTR|ERVL-MaLR	65196.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.46	2.26	17.68	10.86	9.41	5.33	8.64	11.58	10.23	6.53	16.58	1.57
Merged-chrX-57712732-2	chrX	57712642	57712842	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208985.0	NM_001033360	245424.0	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	8.08	3.52	6.85	4.42	5.32	4.7	6.98	12.76	8.46	6.03	12.06	2.19
Merged-chr11-29570969-1	chr11	29570869	29571069	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163521, intron 9 of 11)	RLTR20C2_MM|LTR|ERVK	-22929.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.0	2.52	0.0	0.8	8.59	5.33	6.98	7.35	8.06	7.03	7.54	3.13
Merged-chr16-36745211-1	chr16	36745111	36745311	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	39751.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.44	2.26	6.85	4.42	5.73	4.39	6.98	8.58	8.65	3.51	2.01	2.51
Merged-chr2-120096412-1	chr2	120096312	120096512	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	58163.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.81	3.27	0.0	4.02	3.68	5.64	7.97	8.8	2.56	3.51	4.52	5.33
Merged-chr17-50120296-2	chr17	50120216	50120416	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	70181.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	1.21	1.01	1.14	0.8	6.14	3.76	2.33	14.41	36.58	38.66	68.34	37.28
Merged-chr13-102240218-3	chr13	102240092	102240292	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-453355.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	12.11	7.29	15.4	28.15	7.36	5.96	7.64	14.97	10.42	8.03	10.05	16.6
Merged-chr5-66136017-1	chr5	66135917	66136117	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	14961.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.65	2.52	1.14	1.61	12.68	9.09	3.32	4.35	1.97	5.02	4.02	1.57
Merged-chr7-19475137-1	chr7	19475037	19475237	+	808.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16643.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	2.01	4.56	0.8	1.64	0.0	0.66	2.36	13.96	12.05	1.51	4.39
Merged-chr13-93354610-1	chr13	93354510	93354710	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_147176, intron 4 of 9)	B3A|SINE|B2	46576.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.86	16.1	18.25	10.46	1.64	2.51	2.33	1.82	2.16	2.51	1.0	2.82
Merged-chr16-4630112-3	chr16	4630014	4630214	+	807.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030205, intron 23 of 27)	intron (NM_030205, intron 23 of 27)	-5168.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	11.71	3.52	2.28	7.64	10.23	10.35	6.98	4.57	16.13	10.04	15.58	5.64
Merged-chr15-84072352-3	chr15	84072262	84072462	+	807.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7013.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	15.34	10.31	15.97	7.24	8.18	19.44	6.64	14.36	9.64	9.54	15.58	15.35
Merged-chr11-101986223-3	chr11	101986127	101986327	+	807.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029287)	promoter-TSS (NM_029287)	-829.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	10.9	10.82	8.56	7.24	11.86	14.74	3.99	6.31	14.36	16.57	16.08	16.29
Merged-chr15-88876499-3	chr15	88876400	88876600	+	807.938904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14306.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	17.36	13.58	17.11	8.45	14.32	5.96	12.62	8.72	18.49	17.57	13.57	5.33
Merged-chr6-70875405-3	chr6	70875304	70875504	+	807.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30889.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	9.69	11.82	6.28	5.63	17.18	14.74	15.28	19.15	12.78	7.03	14.07	10.34
Merged-chr2-117344137-3	chr2	117344035	117344235	+	807.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1258.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	14.13	9.06	7.99	11.66	12.27	7.84	9.3	10.26	11.41	8.54	20.1	13.16
Merged-chr3-84135565-2	chr3	84135477	84135677	+	807.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029797, intron 3 of 7)	intron (NM_029797, intron 3 of 7)	20209.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	2.83	5.28	2.28	8.85	10.23	3.76	6.31	10.82	15.34	15.57	15.07	6.58
Merged-chr15-99664679-3	chr15	99664586	99664786	+	807.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5691.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	12.52	6.29	6.28	10.86	8.18	18.19	10.63	16.12	8.85	11.05	18.09	7.52
Merged-chr18-89089147-3	chr18	89089037	89089237	+	807.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175542, intron 35 of 48)	ORR1E|LTR|ERVL-MaLR	-108290.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	12.11	7.29	16.54	11.26	4.91	10.66	7.64	16.54	14.16	11.55	13.57	11.28
Merged-chrX-56425444-2	chrX	56425326	56425526	+	807.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29413.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	5.65	5.79	7.42	5.23	7.36	12.23	7.97	13.79	11.01	4.02	14.57	4.7
Merged-chr4-134852738-3	chr4	134852584	134852784	+	807.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355499, intron 1 of 11)	CpG	661.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	5.65	8.55	11.98	4.02	4.09	7.53	7.97	3.17	11.41	10.04	12.06	10.34
Merged-chr1-89016021-3	chr1	89015923	89016123	+	807.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040471)	promoter-TSS (NR_040471)	-90.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	2.83	8.05	17.11	8.85	11.86	3.14	1.99	9.0	8.65	2.51	7.54	10.34
Merged-chr4-130829490-1	chr4	130829390	130829590	+	807.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36953.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.04	5.28	4.56	2.41	10.64	8.47	6.64	11.33	7.08	7.53	5.53	9.08
Merged-chr9-116137884-3	chr9	116137769	116137969	+	807.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	MLT2C1|LTR|ERVL	37494.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	23.02	16.6	7.99	9.25	18.41	39.51	5.98	13.15	12.39	18.08	12.06	7.21
Merged-chr2-152197447-3	chr2	152197338	152197538	+	807.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29402.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	14.94	10.06	9.13	12.07	12.68	19.76	1.99	17.47	15.34	11.55	9.04	6.27
Merged-chr15-76196790-3	chr15	76196674	76196874	+	807.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	-1064.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	9.69	15.09	8.56	4.42	6.95	5.02	12.29	9.73	13.96	14.06	10.05	6.89
Merged-chr2-145889427-3	chr2	145889299	145889499	+	807.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13842.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	8.48	7.55	3.99	9.25	9.0	9.09	5.65	10.26	19.67	12.05	26.63	11.9
Merged-chr10-81409584-3	chr10	81409473	81409673	+	807.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-2.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	6.86	5.53	3.42	3.62	9.82	11.29	1.33	14.13	17.31	17.07	9.04	8.77
Merged-chr10-111507127-2	chr10	111507027	111507227	+	807.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	841.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	6.86	14.84	13.69	2.41	11.05	9.09	11.29	11.75	11.01	10.54	7.03	11.28
Merged-chr14-57680136-3	chr14	57680045	57680245	+	807.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15189.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	8.88	12.07	10.27	9.65	9.82	13.8	8.3	14.66	14.36	13.56	12.56	8.77
Merged-chr2-124611400-3	chr2	124611303	124611503	+	807.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1107.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.88	5.53	15.97	13.27	7.77	13.8	11.29	9.53	12.98	14.56	20.6	7.52
Merged-chr3-148810715-2	chr3	148810613	148810813	+	807.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	143922.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	11.71	3.27	14.26	11.66	10.23	6.59	10.3	13.99	3.54	5.52	4.52	5.33
Merged-chr14-40917887-3	chr14	40917810	40918010	+	807.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24945.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	10.9	9.31	19.97	10.46	9.41	14.11	3.32	15.7	14.16	10.54	13.57	6.58
Merged-chr1-173934639-3	chr1	173934529	173934729	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302649, intron 5 of 9)	intron (NM_001302649, intron 5 of 9)	7863.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	11.31	9.06	14.26	3.22	33.55	30.42	21.92	19.4	12.19	12.55	10.55	8.46
Merged-chr3-69606661-3	chr3	69606540	69606740	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7680.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	8.48	7.8	9.7	6.84	19.64	13.48	10.96	23.78	12.78	8.54	12.06	10.65
Merged-chr16-37869387-3	chr16	37869272	37869472	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	972.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	8.88	8.3	10.84	14.08	9.41	15.05	9.97	14.83	12.0	9.54	13.57	15.35
Merged-chr5-45491614-3	chr5	45491487	45491687	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-1787.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	9.29	3.02	9.7	9.25	9.82	17.25	7.64	12.93	7.67	14.56	24.12	9.08
Merged-chr9-78526238-1	chr9	78526138	78526338	+	807.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44514.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	4.85	7.04	2.28	4.83	6.55	8.47	7.64	9.53	3.15	8.03	2.01	9.08
Merged-chr2-84358821-3	chr2	84358713	84358913	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	66453.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	10.5	14.09	7.42	3.22	19.64	12.23	17.27	19.96	11.8	17.07	18.59	9.4
Merged-chr1-85598815-3	chr1	85598682	85598882	+	807.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030194)	promoter-TSS (NM_030194)	28.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	14.94	7.8	17.68	12.07	12.27	16.93	7.97	7.57	13.18	13.56	19.6	9.4
Merged-chr13-33959994-2	chr13	33959890	33960090	+	807.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040707, exon 5 of 5)	non-coding (NR_040707, exon 5 of 5)	-4669.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	4.85	7.8	13.69	14.08	11.45	6.9	4.98	11.52	9.24	16.07	1.51	5.01
Merged-chr15-25900733-3	chr15	25900636	25900836	+	807.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-32816.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.83	5.28	11.41	7.64	7.77	13.17	8.64	10.12	14.55	13.56	21.1	4.39
Merged-chr2-155405889-3	chr2	155405795	155405995	+	807.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24039.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	9.69	5.28	4.56	11.66	3.27	8.47	6.98	15.48	12.98	5.02	14.07	11.59
Merged-chr9-123259896-3	chr9	123259830	123260030	+	807.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	859.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	23.82	20.12	9.7	13.67	12.68	11.29	7.31	15.48	8.26	5.52	10.55	9.4
Merged-chr12-69977660-3	chr12	69977577	69977777	+	807.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022028, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	9325.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	9.29	5.53	4.56	8.45	6.55	11.6	9.3	11.24	15.93	15.06	25.12	15.35
Merged-chr3-116255499-2	chr3	116255406	116255606	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2022.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	5.65	8.05	7.99	14.88	3.68	4.7	1.33	8.64	5.11	5.02	2.51	3.76
Merged-chr9-96525299-2	chr9	96525203	96525403	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46628.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.42	6.79	3.99	4.83	8.59	6.9	6.31	5.36	10.62	15.06	19.09	13.78
Merged-chr8-90829785-2	chr8	90829662	90829862	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	927.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	7.27	6.54	2.28	1.21	2.45	2.2	6.98	2.94	4.72	3.51	6.53	3.13
Merged-chr11-79905575-1	chr11	79905475	79905675	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	56812.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.4	3.52	5.7	6.03	6.55	5.96	10.3	10.12	1.97	4.02	6.53	4.7
Merged-chr10-5289588-1	chr10	5289488	5289688	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347711, intron 54 of 145)	intron (NM_001347711, intron 54 of 145)	-94881.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	2.02	2.52	3.99	0.0	7.36	3.76	3.32	7.85	3.93	1.51	3.52	5.95
Merged-chr3-103587517-2	chr3	103587416	103587616	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276681, exon 3 of 8)	exon (NM_001276681, exon 3 of 8)	11390.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	7.67	6.29	2.85	7.24	1.64	5.96	8.64	14.94	9.83	4.52	7.03	7.52
Merged-chr1-106174853-1	chr1	106174753	106174953	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	2984.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.65	3.77	0.0	4.83	7.36	5.33	11.29	12.48	7.87	7.03	14.57	8.14
Merged-chr12-85534383-2	chr12	85534294	85534494	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	60504.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.83	3.77	4.56	3.62	4.5	2.51	9.97	9.39	11.01	11.05	9.55	6.27
Merged-chr10-84424056-2	chr10	84423975	84424175	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	16396.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	16.96	9.06	14.83	3.22	9.41	5.64	12.62	18.31	6.29	5.02	15.07	5.95
Merged-chr4-95192241-2	chr4	95192145	95192345	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-140023.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	10.9	4.53	4.56	9.65	7.77	5.96	13.29	10.51	10.03	5.02	15.58	7.83
Merged-chr19-15201049-1	chr19	15200949	15201149	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-602866.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.23	2.52	3.99	6.84	2.45	5.64	12.29	9.11	1.57	4.02	12.56	5.64
Merged-chr5-9162382-1	chr5	9162282	9162482	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	-606.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	4.85	5.28	4.56	3.62	8.59	9.41	6.64	8.44	5.51	8.54	10.55	2.82
Merged-chr1-40475915-1	chr1	40475815	40476015	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161842, intron 4 of 9)	intron (NM_001161842, intron 4 of 9)	9909.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.81	0.0	0.0	9.25	9.82	2.2	8.3	17.13	3.74	0.0	1.51	0.63
Merged-chr3-130715325-2	chr3	130715156	130715356	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5812.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	2.02	2.26	5.13	2.41	7.77	3.45	15.61	6.87	9.83	9.54	9.55	11.59
Merged-chr1-193145346-3	chr1	193145254	193145454	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7758.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	8.88	18.61	11.98	15.28	11.05	9.09	13.62	9.56	10.62	8.03	21.61	10.34
Merged-chr12-100421887-4	chr12	100421812	100422012	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98910.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.85	2.77	7.99	7.64	8.59	4.39	2.66	9.08	3.74	3.01	7.03	6.89
Merged-chr3-104781014-3	chr3	104780870	104781070	+	807.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-86.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	14.94	14.09	7.99	8.04	15.14	14.11	10.63	9.95	8.26	14.06	12.56	4.39
Merged-chr5-137305928-3	chr5	137305802	137306002	+	807.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359602, intron 2 of 19)	B3A|SINE|B2	1772.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	18.98	13.33	16.54	8.04	12.68	10.03	5.98	7.12	15.34	17.07	11.56	2.82
Merged-chr11-109367031-3	chr11	109366938	109367138	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3384.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	7.27	9.06	11.41	4.02	8.59	18.5	4.65	7.96	20.06	24.1	19.09	11.9
Merged-chr13-23425671-3	chr13	23425552	23425752	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1786.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	11.71	13.58	3.42	8.85	9.82	10.03	3.99	10.26	7.87	8.54	8.54	3.45
Merged-chr18-36304532-3	chr18	36304437	36304637	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4436.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	19.38	10.31	11.41	9.25	18.82	6.9	5.98	15.7	20.65	12.55	14.57	13.16
Merged-chr13-95949528-3	chr13	95949436	95949636	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-57614.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.23	8.3	20.54	21.32	8.59	9.41	13.62	16.29	18.49	9.54	10.55	15.04
Merged-chr7-38025547-2	chr7	38025446	38025646	+	807.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-5994.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	12.11	5.28	9.7	20.11	6.55	11.6	12.95	12.59	2.95	0.0	5.53	2.19
Merged-chr7-12881672-1	chr7	12881572	12881772	+	807.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153802, intron 1 of 3)	intron (NM_153802, intron 1 of 3)	494.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	4.44	3.27	2.85	5.63	4.91	2.51	10.63	7.71	6.29	1.51	4.02	5.95
Merged-chr9-55259970-3	chr9	55259867	55260067	+	807.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	23658.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	9.29	7.04	20.54	9.65	24.96	20.07	27.57	17.78	15.74	20.08	39.19	13.47
Merged-chr5-90655553-3	chr5	90655464	90655664	+	807.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15037.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	18.17	2.26	6.28	14.48	5.73	9.72	3.32	11.83	7.08	11.55	11.56	6.89
Merged-chr4-16160228-2	chr4	16160119	16160319	+	807.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3424.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	10.09	8.05	11.98	4.02	12.68	5.02	14.28	15.95	13.57	12.55	13.57	5.95
Merged-chr17-5495698-3	chr17	5495653	5495853	+	807.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3153.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.81	4.78	13.12	6.84	6.95	1.57	7.31	8.66	8.26	0.0	11.56	4.39
Merged-chr6-129275486-3	chr6	129275389	129275589	+	807.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033122)	promoter-TSS (NM_001033122)	-120.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	17.77	13.58	6.85	1.61	18.0	21.01	5.31	4.71	12.19	14.06	12.56	3.76
Merged-chr9-18453202-3	chr9	18453106	18453306	+	807.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028935)	TTS (NM_028935)	20353.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	7.27	5.79	27.95	12.87	10.23	11.6	18.93	14.16	14.55	15.06	15.07	6.27
Merged-chr2-128701870-2	chr2	128701774	128701974	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2959.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.23	3.52	2.28	6.84	9.0	6.27	10.3	20.55	10.82	10.54	16.58	14.1
Merged-chr13-111821927-1	chr13	111821827	111822027	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-12934.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.25	0.0	0.0	10.64	7.84	11.96	9.48	8.06	6.03	27.64	5.01
Merged-chr10-63153807-1	chr10	63153707	63153907	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182992, intron 6 of 19)	intron (NM_182992, intron 6 of 19)	50145.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	4.04	6.04	6.85	6.44	9.0	5.64	7.64	11.05	2.56	8.03	8.04	4.39
Merged-chr10-80940694-4	chr10	80940580	80940780	+	807.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10589.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	2.42	6.29	5.13	3.62	4.5	13.17	5.65	8.27	6.69	11.05	8.04	7.21
Merged-chr7-110769403-1	chr7	110769303	110769503	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276301, intron 1 of 14)	intron (NM_001276301, intron 1 of 14)	1197.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.44	9.56	12.55	6.84	7.36	9.09	10.63	7.49	5.31	14.06	9.04	2.82
Merged-chr4-150397470-3	chr4	150397380	150397580	+	807.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	115564.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	9.69	7.8	7.99	6.84	11.05	18.81	7.97	12.22	20.85	11.05	24.62	18.8
Merged-chrX-7733885-3	chrX	7733788	7733988	+	807.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207202, exon 10 of 10)	exon (NM_207202, exon 10 of 10)	5317.0	NM_138602	54637.0	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	11.31	10.82	10.27	4.02	5.73	13.8	3.32	10.23	21.05	14.06	13.06	8.14
Merged-chr7-80776294-3	chr7	80776197	80776397	+	807.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	RSINE1|SINE|B4	27034.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.63	8.3	16.54	13.67	16.36	11.29	8.64	19.82	9.83	11.55	17.59	16.92
Merged-chr11-78194885-3	chr11	78194798	78194998	+	807.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045516, intron 1 of 3)	intron (NM_001045516, intron 1 of 3)	1506.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	12.11	12.58	4.56	12.47	12.68	7.53	6.31	8.41	7.08	16.57	4.52	8.77
Merged-chr2-71644245-3	chr2	71644152	71644352	+	807.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-75165.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	5.25	8.3	16.54	4.83	14.32	13.17	11.96	11.64	9.83	18.58	19.09	7.83
Merged-chr12-95695544-3	chr12	95695447	95695647	+	807.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	CpG	3321.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	6.46	10.06	13.12	10.46	21.27	10.98	21.92	16.49	11.01	16.57	10.55	7.83
Merged-chr3-132087248-3	chr3	132087158	132087358	+	807.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	1966.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	7.27	5.53	14.83	9.25	25.36	14.74	19.27	12.95	3.93	14.56	6.03	12.53
Merged-chr1-180812626-3	chr1	180812508	180812708	+	807.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008210, intron 1 of 3)	CpG	997.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.06	9.31	8.56	6.84	6.14	7.21	10.3	3.34	18.29	11.55	16.08	11.9
Merged-chr6-43848094-1	chr6	43847994	43848194	+	807.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR31A_MM|LTR|ERVK	-181816.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.81	2.01	1.14	2.01	8.59	10.98	8.3	10.29	4.13	5.52	3.01	2.51
Merged-chr1-120073122-3	chr1	120073019	120073219	+	807.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	661.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	7.27	12.58	8.56	10.46	18.41	9.72	8.64	9.98	15.34	14.06	11.05	7.52
Merged-chr9-66213002-2	chr9	66212894	66213094	+	807.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54768.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	15.34	15.34	10.27	3.62	5.73	28.54	4.65	3.14	15.74	12.55	8.54	2.82
Merged-chr1-177711571-3	chr1	177711472	177711672	+	807.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-18242.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	8.48	7.8	6.85	8.04	15.96	15.37	6.98	8.3	13.37	24.1	20.1	13.78
Merged-chr18-82475952-3	chr18	82475848	82476048	+	807.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	825.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	12.11	8.3	6.85	6.44	14.73	11.29	13.29	10.46	11.41	11.55	11.56	8.77
Merged-chr18-20745722-4	chr18	20745592	20745792	+	807.104187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019737, exon 1 of 9)	5' UTR (NM_019737, exon 1 of 9)	712.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.65	8.3	13.12	8.85	5.32	8.78	11.96	8.1	15.74	7.03	10.55	15.98
Merged-chr4-141148560-4	chr4	141148452	141148652	+	807.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	CpG	630.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	10.9	12.07	3.99	6.03	18.0	16.31	8.3	11.58	9.05	16.07	9.55	18.8
Merged-chr7-99531974-4	chr7	99531850	99532050	+	807.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3536.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	7.67	9.31	9.7	9.65	10.64	8.15	7.31	4.65	9.24	9.04	9.04	7.83
Merged-chr7-90018658-3	chr7	90018581	90018781	+	807.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B1|LTR|ERVK	-10478.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.46	5.79	5.13	11.66	15.14	9.41	7.31	8.92	8.85	17.57	12.06	9.4
Merged-chr2-150672172-3	chr2	150672070	150672270	+	807.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3930.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	7.27	7.29	14.26	12.87	13.5	15.37	17.27	27.39	11.6	6.53	14.57	8.46
Merged-chr5-31814265-3	chr5	31814183	31814383	+	807.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 4 of 11)	intron (NM_144541, intron 4 of 11)	116233.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	11.71	7.8	14.83	10.86	10.23	7.53	7.64	10.29	18.88	8.54	14.07	10.02
Merged-chr14-63382027-3	chr14	63381937	63382137	+	807.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35150.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	8.88	11.07	10.27	8.85	15.14	16.62	6.98	10.29	14.36	14.56	22.11	10.96
Merged-chr3-121262917-2	chr3	121262767	121262967	+	807.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001355678, exon 1 of 8)	5' UTR (NM_001355678, exon 1 of 8)	292.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	9.69	5.79	5.7	9.65	6.55	10.98	13.29	8.13	7.28	2.01	5.53	9.4
Merged-chr18-75462761-3	chr18	75462653	75462853	+	807.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-51892.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	26.25	8.8	10.84	11.66	20.05	8.78	11.96	14.02	11.6	3.51	16.58	8.46
Merged-chr17-30474792-3	chr17	30474701	30474901	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-78621.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	15.34	19.87	26.24	33.38	3.27	6.27	2.33	6.79	10.62	5.02	9.55	3.76
Merged-chr15-3271445-2	chr15	3271345	3271545	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	468.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	7.27	8.05	5.7	12.87	9.0	12.86	8.64	6.34	6.29	12.05	10.05	7.83
Merged-chr15-78119921-2	chr15	78119810	78120010	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007583)	promoter-TSS (NM_007583)	-630.0	NM_007583	12300.0	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	10.09	3.77	8.56	3.62	9.0	6.9	8.64	7.68	16.72	8.54	15.58	10.02
Merged-chr11-118998769-1	chr11	118998669	118998869	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10588.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	8.48	1.76	1.71	0.4	12.68	11.6	5.98	3.0	7.47	8.54	5.02	5.01
Merged-chr2-121419153-2	chr2	121419053	121419253	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	5251.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	12.52	5.79	12.55	20.91	7.36	10.66	1.66	9.5	6.49	3.51	7.03	8.77
Merged-chr1-173459711-2	chr1	173459616	173459816	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013779, exon 6 of 9)	exon (NM_001013779, exon 6 of 9)	39112.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.83	6.54	10.84	12.07	10.23	3.45	5.98	12.56	0.0	0.0	0.0	0.0
Merged-chr2-124643618-1	chr2	124643518	124643718	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-9963.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.42	2.77	5.7	4.42	6.14	5.96	1.99	9.62	5.51	1.0	6.53	2.51
Merged-chr7-79935242-1	chr7	79935142	79935342	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	22.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	8.48	6.29	5.7	2.82	8.18	15.68	9.63	5.92	8.46	10.54	7.54	7.21
Merged-chr2-60839020-1	chr2	60838920	60839120	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	42418.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.46	1.76	6.85	7.64	6.55	3.76	5.98	12.28	3.54	1.51	7.03	1.57
Merged-chr7-67952387-1	chr7	67952287	67952487	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_010513, exon 1 of 21)	5' UTR (NM_010513, exon 1 of 21)	130.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	10.9	14.84	6.85	6.44	6.55	7.84	5.65	15.2	7.47	5.02	7.03	13.78
Merged-chr4-126702676-3	chr4	126702583	126702783	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011970, intron 3 of 5)	intron (NM_011970, intron 3 of 5)	25040.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	8.88	10.56	13.12	12.87	17.18	10.03	2.99	18.79	9.83	7.03	10.05	11.59
Merged-chr10-93444569-2	chr10	93444481	93444681	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8815.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.81	3.02	9.7	6.03	4.91	6.9	12.29	9.9	10.42	1.51	10.55	6.89
Merged-chr1-97667472-1	chr1	97667372	97667572	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR31_Mm|LTR|ERVK	-5454.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	15.75	3.27	5.7	7.64	8.59	14.11	5.98	8.5	4.92	8.54	13.57	5.64
Merged-chr19-41597723-2	chr19	41597607	41597807	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9056.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	4.04	3.52	3.99	0.8	5.32	10.35	6.98	3.62	29.9	26.61	33.16	13.78
Merged-chr10-44632992-3	chr10	44632887	44633087	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-174239.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	15.34	3.77	4.56	8.45	15.96	18.19	7.97	19.09	18.1	13.05	18.59	11.59
Merged-chr1-160792205-1	chr1	160792105	160792305	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013862, intron 1 of 20)	CpG	733.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	2.42	2.26	1.71	2.01	4.91	5.64	10.96	5.78	4.92	4.02	7.03	5.33
Merged-chr4-106385470-1	chr4	106385370	106385570	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183225, exon 32 of 68)	exon (NM_183225, exon 32 of 68)	69257.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	3.23	4.53	13.12	5.63	3.27	6.9	11.96	15.25	0.59	0.0	5.02	0.31
Merged-chr19-60731065-1	chr19	60730965	60731165	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24922.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	4.44	3.02	11.41	5.23	7.77	1.88	2.33	6.03	7.08	5.02	7.03	7.21
Merged-chr10-24087117-1	chr10	24087017	24087217	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	5177.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	3.63	2.52	1.14	8.04	6.55	7.53	2.66	8.78	5.9	11.55	10.55	3.45
Merged-chrX-7318652-1	chrX	7318552	7318752	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001243762, intron 1 of 13)	CpG	706.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	6.46	2.52	1.71	2.82	3.27	1.25	2.99	0.11	5.31	4.52	6.03	2.82
Merged-chr12-100885781-1	chr12	100885681	100885881	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	13743.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	7.67	5.53	10.27	16.09	5.32	7.84	4.98	7.77	6.29	3.01	11.56	2.19
Merged-chr13-107677022-3	chr13	107676906	107677106	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10391.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	13.33	9.31	10.27	6.44	11.86	17.56	9.3	7.21	20.65	8.03	12.56	3.45
Merged-chr1-183369026-1	chr1	183368926	183369126	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177389, intron 1 of 26)	CpG	539.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	5.25	7.55	5.7	10.46	7.36	13.48	9.3	9.22	10.42	7.53	11.05	14.1
Merged-chr9-99009338-1	chr9	99009238	99009438	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080776, exon 7 of 8)	exon (NM_001080776, exon 7 of 8)	22965.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.4	3.02	6.28	7.24	8.18	5.96	2.33	6.7	10.03	3.01	5.02	4.39
Merged-chr10-24638406-1	chr10	24638306	24638506	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42964.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.06	11.32	19.4	4.83	6.14	8.78	8.3	20.83	6.69	2.01	6.53	6.27
Merged-chr17-27242306-1	chr17	27242206	27242406	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5760.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	2.83	2.26	3.42	4.83	10.23	1.88	1.66	8.13	2.75	1.0	3.01	1.25
Merged-chr12-98703800-1	chr12	98703700	98703900	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146199, intron 8 of 18)	intron (NM_001146199, intron 8 of 18)	30845.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	5.25	3.02	5.7	6.44	11.05	6.59	5.98	11.52	5.31	8.54	9.04	1.25
Merged-chr11-5509345-3	chr11	5509253	5509453	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11288.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	9.69	9.06	13.69	10.05	5.32	4.39	5.31	5.89	19.28	2.01	14.57	14.72
Merged-chr10-59889554-1	chr10	59889454	59889654	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	9963.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	3.63	2.77	2.28	2.01	3.27	10.35	2.66	7.68	0.59	3.01	6.03	7.83
Merged-chr6-108472009-1	chr6	108471909	108472109	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 45 of 61)	intron (NM_010585, intron 45 of 61)	-17734.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	1.01	0.0	0.0	2.05	7.53	6.64	7.37	1.18	1.0	0.0	0.0
Merged-chr14-118662204-1	chr14	118662104	118662304	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	14727.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.04	5.79	1.14	4.83	4.91	10.35	6.98	7.68	4.13	8.03	10.05	4.39
Merged-chr8-109872517-1	chr8	109872417	109872617	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122594, intron 1 of 18)	intron (NM_001122594, intron 1 of 18)	3914.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	8.48	4.02	5.13	6.84	6.95	4.7	9.63	11.47	8.65	3.51	6.53	2.82
Merged-chr10-100137554-3	chr10	100137451	100137651	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORSL|DNA|hAT-Tip100	121730.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	12.92	2.77	13.12	10.46	14.73	7.21	12.29	21.08	11.41	11.05	10.05	10.65
Merged-chr12-51679942-1	chr12	51679842	51680042	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	L1M4|LINE|L1	-11024.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	9.29	6.29	5.7	8.45	9.82	11.92	3.65	2.69	8.06	11.05	5.53	4.39
Merged-chr5-64961709-1	chr5	64961609	64961809	+	807.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1613.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	11.31	9.81	7.42	6.84	12.27	7.53	7.97	7.54	20.85	11.05	14.07	13.16
Merged-chr17-37022851-3	chr17	37022731	37022931	+	806.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010814, intron 1 of 7)	intron (NM_010814, intron 1 of 7)	567.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	13.33	8.3	6.85	9.25	7.36	10.98	2.33	10.21	12.59	20.08	27.13	4.07
Merged-chr13-58521134-2	chr13	58521031	58521231	+	806.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89746.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	9.29	13.83	18.83	20.91	12.27	5.96	9.3	7.49	5.51	4.02	6.03	9.08
Merged-chr5-92345232-3	chr5	92345137	92345337	+	806.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	3652.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	12.11	16.85	3.42	2.41	13.5	26.65	9.63	7.15	17.7	27.62	15.58	4.7
Merged-chr8-26687242-3	chr8	26687132	26687332	+	806.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137191.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	8.88	9.31	10.27	4.83	13.91	13.48	6.64	12.64	24.19	16.57	14.07	4.7
Merged-chr10-20855120-2	chr10	20855015	20855215	+	806.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97432.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	6.46	9.81	9.13	8.45	7.77	12.54	12.62	23.02	4.33	7.03	6.03	11.59
Merged-chr3-7613800-2	chr3	7613721	7613921	+	806.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008371)	promoter-TSS (NM_008371)	-61.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	3.23	3.27	5.7	11.66	4.09	8.78	2.66	5.02	11.41	12.05	13.06	15.66
Merged-chr14-58308998-2	chr14	58308885	58309085	+	806.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	236299.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	6.46	3.77	4.56	8.04	9.41	8.78	15.94	5.44	23.6	24.1	20.6	25.69
Merged-chr10-94354306-5	chr10	94354270	94354470	+	806.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	42421.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.4	6.04	1.14	2.82	4.09	7.53	1.0	2.13	9.05	7.53	4.02	1.57
Merged-chr2-29592799-3	chr2	29592704	29592904	+	806.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26916.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	7.27	11.82	26.24	12.87	7.77	12.86	5.98	13.26	11.21	5.02	12.06	7.83
Merged-chr16-92801806-3	chr16	92801726	92801926	+	806.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	24248.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.06	6.79	13.69	12.47	13.91	9.41	13.29	27.22	9.64	6.53	5.53	10.96
Merged-chr3-116256324-3	chr3	116256215	116256415	+	806.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2831.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	8.48	11.57	13.69	15.28	9.82	10.66	5.98	9.7	14.95	6.53	13.57	5.64
Merged-chr10-51498523-3	chr10	51498410	51498610	+	806.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	7612.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.63	9.56	10.84	17.29	11.86	19.44	5.98	12.06	10.03	13.05	14.07	12.22
Merged-chr18-4239099-3	chr18	4238988	4239188	+	806.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73256.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	7.67	9.56	9.7	2.82	10.64	4.7	7.97	7.32	12.78	6.53	18.59	7.21
Merged-chr2-104690909-3	chr2	104690818	104691018	+	806.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 5 of 9)	MTC|LTR|ERVL-MaLR	21244.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	8.88	9.06	12.55	14.88	11.86	17.56	8.97	10.4	15.74	3.51	17.59	9.4
Merged-chr10-95795715-1	chr10	95795615	95795815	+	806.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144948.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	1.62	1.76	7.42	6.84	12.27	8.47	4.98	20.83	3.15	3.01	11.05	4.07
Merged-chr4-70515687-3	chr4	70515587	70515787	+	806.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172694, intron 1 of 5)	intron (NM_172694, intron 1 of 5)	19241.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	9.29	5.03	10.84	16.49	10.64	8.47	15.61	7.23	20.06	18.58	33.67	10.65
Merged-chrX-106628723-3	chrX	106628625	106628825	+	806.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	MTD|LTR|ERVL-MaLR	-25046.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	7.27	3.52	15.97	11.26	11.45	13.48	9.97	8.94	14.16	8.54	22.61	7.21
Merged-chr9-63589462-3	chr9	63589383	63589583	+	806.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030068, intron 3 of 21)	RMER16_Mm|LTR|ERVK	13010.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	9.69	15.34	13.69	5.23	19.23	8.78	6.31	11.24	13.96	1.51	8.04	8.77
Merged-chr10-81484155-3	chr10	81484061	81484261	+	806.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1452.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	18.98	8.8	9.13	6.44	13.09	9.41	3.65	5.89	19.28	21.59	12.56	13.16
Merged-chr5-113985986-2	chr5	113985921	113986121	+	806.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	7736.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	7.67	6.04	2.85	6.44	4.09	8.15	8.64	4.77	7.47	13.56	10.05	4.39
Merged-chr13-91808308-2	chr13	91808246	91808446	+	806.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145453)	promoter-TSS (NM_145453)	-650.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	11.71	9.81	5.13	17.7	0.82	4.39	5.98	6.22	3.15	4.02	8.04	7.83
Merged-chr3-95301533-1	chr3	95301433	95301633	+	806.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085383, intron 6 of 12)	intron (NM_001085383, intron 6 of 12)	5271.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	2.02	3.02	2.28	0.8	9.82	8.47	5.31	7.54	13.18	8.54	6.03	5.64
Merged-chr19-9985097-3	chr19	9985001	9985201	+	806.722229	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011913)	TTS (NM_011913)	2455.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.23	5.03	2.85	4.02	3.27	1.88	9.63	2.64	5.11	4.52	3.01	5.64
Merged-chr13-106812192-3	chr13	106812075	106812275	+	806.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 30 of 30)	intron (NM_001360897, intron 30 of 30)	124783.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	3.23	11.32	13.12	14.48	11.05	6.9	15.28	16.74	9.44	4.52	9.04	5.64
Merged-chr3-108151515-3	chr3	108151410	108151610	+	806.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3422.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	8.48	6.54	11.98	8.45	8.18	12.86	8.97	8.89	9.05	11.05	20.1	9.71
Merged-chr6-39562810-3	chr6	39562682	39562882	+	806.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4948.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	8.88	5.79	15.97	4.02	7.36	9.09	10.63	14.24	18.29	18.58	12.56	12.84
Merged-chr9-73044291-3	chr9	73044195	73044395	+	806.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	-515.0	NM_023635	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	8.08	7.04	11.41	10.86	9.0	9.09	4.65	11.13	17.51	13.56	17.08	12.84
Merged-chr3-152355467-1	chr3	152355367	152355567	+	806.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355666, intron 1 of 21)	intron (NM_001355666, intron 1 of 21)	8989.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	1.21	3.77	2.28	8.45	6.55	8.78	5.65	9.36	6.29	3.51	2.51	3.76
Merged-chr4-59837941-3	chr4	59837838	59838038	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	32288.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	14.94	9.06	13.69	9.65	13.91	10.35	7.97	16.79	14.36	7.53	14.07	7.83
Merged-chr9-109200559-1	chr9	109200459	109200659	+	806.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4584.0	NM_177598	211305.0	Mm.225242	NM_177598	ENSMUSG00000049314	Fbxw13	E330017E16	F-box and WD-40 domain protein 13	protein-coding	4.04	1.51	1.14	2.41	4.91	5.96	3.99	3.87	12.78	10.54	16.58	9.4
Merged-chr2-181460006-3	chr2	181459930	181460130	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	-604.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	8.08	8.55	8.56	6.84	9.82	7.21	7.31	8.83	7.08	15.06	11.05	5.64
Merged-chr10-60348080-3	chr10	60347911	60348111	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	1160.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	10.09	5.03	6.85	4.83	8.59	1.57	6.64	9.84	10.62	4.52	12.06	4.39
Merged-chr11-58965274-3	chr11	58965211	58965411	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031172, exon 2 of 7)	exon (NM_031172, exon 2 of 7)	1530.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	10.09	5.03	1.14	2.41	13.91	3.45	7.31	9.7	20.06	8.54	19.09	12.22
Merged-chr4-101296941-3	chr4	101296870	101297070	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-31688.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.65	6.04	4.56	8.85	14.73	8.78	4.65	11.78	15.74	9.54	5.53	9.71
Merged-chr1-191241756-2	chr1	191241639	191241839	+	806.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17285.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	4.85	4.78	14.83	4.02	8.18	3.14	13.29	10.96	11.6	6.53	14.07	9.4
Merged-chr18-60710874-2	chr18	60710777	60710977	+	806.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16689.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	10.5	8.8	3.99	3.22	11.05	8.78	4.65	7.01	7.08	8.54	13.06	5.33
Merged-chr2-50674495-2	chr2	50674382	50674582	+	806.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	-235202.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.5	0.0	0.0	11.05	10.35	10.3	4.46	7.87	13.05	18.09	1.57
Merged-chr18-56608934-2	chr18	56608824	56609024	+	806.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20576.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	3.63	8.3	5.7	7.24	5.32	9.41	0.66	7.21	19.08	10.04	11.05	9.71
Merged-chr16-18419603-3	chr16	18419506	18419706	+	806.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-6112.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	12.92	8.55	18.83	11.26	11.86	7.21	17.61	23.92	10.03	7.53	18.09	12.53
Merged-chrX-105928956-8	chrX	105928826	105929026	+	806.62915	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 1 of 34)	CpG	446.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	10.5	7.8	11.98	9.65	14.32	7.53	6.31	3.45	10.23	15.06	12.06	6.27
Merged-chr4-126536657-2	chr4	126536549	126536749	+	806.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3191.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	10.9	7.04	11.41	11.26	10.64	9.72	11.29	12.84	11.8	4.02	6.53	11.28
Merged-chr19-6856897-3	chr19	6856794	6856994	+	806.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081291, intron 6 of 26)	intron (NM_001081291, intron 6 of 26)	1317.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	8.88	7.55	15.97	8.85	16.77	14.74	10.63	7.96	20.85	12.55	13.06	9.4
Merged-chr16-21351484-3	chr16	21351380	21351580	+	806.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18124.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	7.27	7.8	25.67	12.07	3.68	6.9	3.32	8.89	16.72	10.04	9.55	11.9
Merged-chr19-12537406-2	chr19	12537302	12537502	+	806.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35406.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	11.31	3.02	4.56	2.41	10.64	5.64	3.99	8.07	14.55	11.05	19.6	10.02
Merged-chr18-43477788-2	chr18	43477706	43477906	+	806.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-39520.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.83	7.8	3.42	8.45	11.86	16.31	10.96	18.56	3.93	7.03	5.53	6.27
Merged-chr10-95510161-3	chr10	95510061	95510261	+	806.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-5001.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	10.5	6.29	15.97	8.04	10.64	18.81	6.31	9.73	17.7	14.56	16.08	9.08
Merged-chr5-134607318-3	chr5	134607220	134607420	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020044, intron 3 of 12)	intron (NM_020044, intron 3 of 12)	7705.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	3.63	8.8	5.7	10.05	22.91	45.15	17.27	22.35	18.69	15.57	21.1	10.34
Merged-chr6-129472173-3	chr6	129472038	129472238	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	641.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	8.88	7.55	5.7	10.46	8.59	5.02	5.98	10.74	13.96	12.05	4.52	13.16
Merged-chr2-45191943-3	chr2	45191842	45192042	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74500.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	9.69	25.4	17.11	10.46	2.05	6.27	2.99	5.33	15.54	7.03	24.12	15.98
Merged-chr17-45724392-3	chr17	45724292	45724492	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9452.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	8.08	11.57	11.41	7.24	13.09	5.64	2.66	12.31	12.19	15.06	15.07	7.21
Merged-chr8-18950815-5	chr8	18950719	18950919	+	806.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286469)	promoter-TSS (NM_001286469)	52.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.44	3.52	5.13	6.44	12.68	13.8	4.98	11.61	10.03	4.52	10.05	11.9
Merged-chr5-147894185-2	chr5	147894094	147894294	+	806.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357002, intron 1 of 5)	intron (NM_001357002, intron 1 of 5)	621.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.63	4.02	7.99	8.85	5.73	9.41	15.28	15.08	9.24	11.05	12.56	5.01
Merged-chr4-70536031-3	chr4	70535913	70536113	+	806.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1085.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	10.5	3.77	9.13	9.65	12.27	7.53	11.96	7.21	11.6	11.55	19.09	13.16
Merged-chr17-50510736-4	chr17	50510636	50510836	+	806.511902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	1189.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.85	5.53	3.42	1.61	10.23	26.65	7.97	5.38	14.75	22.59	8.54	9.08
Merged-chr12-85270439-3	chr12	85270338	85270538	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304475, intron 1 of 11)	CpG	153.0	NM_001304475	217716.0	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	12.11	12.83	11.41	8.45	10.23	17.25	13.62	7.6	13.57	16.57	8.04	3.45
Merged-chr3-9886265-2	chr3	9886170	9886370	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52591.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.21	1.51	3.99	8.04	6.95	10.35	6.64	8.55	13.37	9.04	20.1	5.64
Merged-chr15-62469996-2	chr15	62469896	62470096	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-250545.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	13.73	7.55	6.28	8.04	5.32	12.54	5.98	11.64	16.52	8.03	12.06	6.89
Merged-chr10-40095998-1	chr10	40095898	40096098	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	MIRb|SINE|MIR	46256.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.04	0.0	3.42	2.41	9.0	1.88	7.64	8.19	4.33	4.52	3.52	1.88
Merged-chr15-83221955-1	chr15	83221855	83222055	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29776.0	NM_001170954	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	2.83	2.77	3.42	9.25	6.55	12.23	5.31	8.86	2.95	2.51	8.04	4.39
Merged-chr1-183273359-2	chr1	183273262	183273462	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23698.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	9.29	5.53	4.56	9.25	9.41	15.05	4.65	9.03	12.78	13.56	10.05	13.47
Merged-chr18-59175240-3	chr18	59175130	59175330	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081328)	promoter-TSS (NM_001081328)	-110.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	10.9	9.81	2.28	5.23	7.77	31.67	13.29	23.13	7.87	7.03	9.55	9.08
Merged-chr1-184733745-2	chr1	184733657	184733857	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1264.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	13.73	5.28	19.97	4.83	8.18	6.27	4.32	8.83	11.8	17.57	7.03	7.52
Merged-chr10-46108328-1	chr10	46108228	46108428	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-136420.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	4.04	6.29	9.13	1.61	1.64	10.66	6.31	8.5	4.33	10.54	8.54	3.45
Merged-chr4-53115539-1	chr4	53115439	53115639	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	44356.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.44	5.79	10.84	16.89	6.55	8.78	6.31	14.92	10.23	5.52	5.02	8.14
Merged-chr10-95918953-1	chr10	95918853	95919053	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21710.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.04	5.79	2.28	4.83	8.18	1.25	4.32	8.8	3.74	0.5	3.01	2.82
Merged-chrX-153623371-1	chrX	153623271	153623471	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	64778.0	NM_001310716	69361.0	Mm.46095	NM_173367	ENSMUSG00000048573	Cypt3	1700006H02Rik|Ckt1r1	cysteine-rich perinuclear theca 3	protein-coding	8.88	2.26	3.42	4.42	7.77	9.72	5.98	10.32	1.57	1.51	6.03	0.63
Merged-chr17-84107233-3	chr17	84107124	84107324	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28564.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	7.67	5.79	9.7	8.85	18.41	5.02	12.29	18.7	10.62	11.05	15.07	10.65
Merged-chr4-150504868-1	chr4	150504768	150504968	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 8 of 22)	intron (NM_001085492, intron 8 of 22)	147306.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.63	4.02	5.7	7.24	7.36	8.15	0.66	8.5	5.31	3.51	11.56	6.27
Merged-chr12-39038987-1	chr12	39038887	39039087	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	255276.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.65	3.02	5.7	16.09	5.73	4.08	9.63	13.65	4.33	2.51	12.56	3.45
Merged-chr19-56265290-2	chr19	56265186	56265386	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-22626.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	16.56	17.1	9.7	7.24	9.0	14.74	6.98	8.5	7.47	2.01	5.02	5.33
Merged-chrX-77414375-2	chrX	77414279	77414479	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96848.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	4.85	7.8	10.27	12.87	13.09	15.99	26.57	23.92	5.31	9.04	17.59	4.7
Merged-chr17-17873606-1	chr17	17873506	17873706	+	806.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	10333.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	1.62	2.26	2.28	1.61	1.64	1.88	2.66	2.75	10.62	17.57	17.59	6.27
Merged-chr7-99101196-1	chr7	99101096	99101296	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39948.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.06	2.26	2.85	6.84	7.77	2.51	5.98	6.93	6.88	8.03	14.57	5.95
Merged-chr9-23651533-1	chr9	23651433	23651633	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	428457.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.81	0.5	0.0	3.22	9.0	6.59	4.32	8.07	2.36	0.0	3.01	0.94
Merged-chr16-94571418-1	chr16	94571318	94571518	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	511.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.85	4.28	7.42	7.24	6.14	5.33	6.31	4.35	4.52	10.54	7.03	8.77
Merged-chr13-112990615-1	chr13	112990515	112990715	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081062, exon 3 of 3)	3' UTR (NM_001081062, exon 3 of 3)	2813.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	4.04	3.77	3.42	1.61	9.41	10.03	8.97	8.78	5.11	8.54	14.07	3.13
Merged-chr16-7420017-4	chr16	7419947	7420147	+	806.458313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	350212.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	1.62	2.52	0.0	3.62	6.55	2.51	5.65	5.02	7.28	16.07	14.07	14.72
Merged-chr2-71543171-3	chr2	71543091	71543291	+	806.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010054)	TTS (NM_010054)	3563.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	13.73	2.77	6.28	7.64	11.45	21.95	15.61	23.72	18.1	23.1	42.71	9.08
Merged-chr13-4777053-3	chr13	4776933	4777133	+	806.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167869.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.06	6.79	4.56	6.84	11.86	17.25	5.31	12.76	16.52	17.57	27.13	8.77
Merged-chr2-29655683-2	chr2	29655592	29655792	+	806.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	35972.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	2.83	4.53	11.98	6.44	5.32	6.59	2.66	5.41	11.21	6.03	15.07	9.4
Merged-chr19-11240659-2	chr19	11240578	11240778	+	806.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	Lx|LINE|L1	25473.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	12.52	10.82	15.4	5.23	10.64	8.15	9.97	9.42	7.28	10.04	8.04	4.39
Merged-chr17-71195246-3	chr17	71195144	71195344	+	806.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-9410.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	12.11	7.04	13.69	12.07	8.18	20.38	7.31	9.62	21.83	13.56	16.58	13.47
Merged-chr8-83736148-2	chr8	83736066	83736266	+	806.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	RLTR11A2|LTR|ERVK	5145.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.67	4.78	6.28	10.86	6.95	11.29	3.99	6.5	17.9	16.07	13.06	2.82
Merged-chr6-38992161-2	chr6	38992070	38992270	+	806.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 4 of 12)	L1ME3|LINE|L1	73184.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	8.88	4.53	0.57	6.44	14.32	9.72	6.31	8.02	12.0	14.06	8.04	9.71
Merged-chr7-113180453-3	chr7	113180368	113180568	+	806.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-26997.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	10.5	6.04	11.41	30.16	12.27	10.35	12.62	28.49	17.11	1.51	20.6	10.96
Merged-chr11-120555053-2	chr11	120554936	120555136	+	806.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3904.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	11.31	6.04	5.7	2.01	18.0	11.6	9.63	18.45	17.11	15.57	14.57	8.77
Merged-chr8-11451666-3	chr8	11451609	11451809	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	-26220.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.06	7.29	9.13	5.63	5.32	5.64	7.31	7.07	12.0	5.52	10.55	2.51
Merged-chr6-127155009-3	chr6	127154829	127155029	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-3881.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	5.25	10.06	14.26	8.04	3.27	3.45	5.31	4.43	5.7	6.53	7.03	5.33
Merged-chr15-89147235-3	chr15	89147155	89147355	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	2351.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	10.9	4.78	16.54	5.63	8.59	6.9	5.65	6.84	17.51	19.08	14.57	9.08
Merged-chr10-75589356-3	chr10	75589244	75589444	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-37.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	7.67	14.34	19.4	15.69	5.73	6.59	13.29	11.27	11.01	9.54	13.57	5.01
Merged-chr9-110132435-1	chr9	110132335	110132535	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009211, intron 1 of 27)	CpG	411.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	14.13	14.84	12.55	6.84	14.32	10.03	1.99	10.18	12.59	14.56	13.57	9.08
Merged-chr8-126848821-1	chr8	126848721	126848921	+	806.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-199.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.46	10.82	11.41	4.42	9.41	6.27	7.97	6.87	5.11	6.53	9.04	3.45
Merged-chr5-43894288-3	chr5	43894207	43894407	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	25498.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	12.52	5.79	10.27	13.27	5.32	13.8	13.95	12.48	11.6	9.04	16.08	10.34
Merged-chr19-3719180-3	chr19	3719082	3719282	+	806.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10771.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	14.13	10.06	9.13	10.86	7.36	14.42	10.63	8.92	4.92	11.55	17.08	4.07
Merged-chr8-126869600-3	chr8	126869514	126869714	+	806.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20594.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	12.52	8.55	9.7	14.48	18.0	7.53	10.96	15.53	13.18	11.55	7.03	7.21
Merged-chr9-80068928-3	chr9	80068812	80069012	+	806.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	2009.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	10.5	5.53	15.4	5.23	3.27	8.47	5.65	12.64	15.14	12.05	10.55	7.83
Merged-chr5-125385525-5	chr5	125385374	125385574	+	806.25238	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019639)	TTS (NM_019639)	4543.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.48	20.12	11.41	8.04	11.45	16.31	4.32	1.74	13.96	12.05	6.03	8.14
Merged-chr1-34510824-2	chr1	34510729	34510929	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12417.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	2.83	6.04	7.99	6.84	11.86	10.98	10.63	11.21	9.24	3.01	9.55	10.65
Merged-chr7-51892810-2	chr7	51892695	51892895	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330607, intron 2 of 7)	intron (NM_001330607, intron 2 of 7)	13828.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	5.65	2.01	0.0	4.83	3.68	7.84	9.3	13.85	10.23	11.05	24.12	4.7
Merged-chr4-97814657-1	chr4	97814557	97814757	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37031.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	1.01	2.28	0.8	8.59	7.53	9.97	11.19	4.72	6.03	9.04	4.39
Merged-chr14-45092509-2	chr14	45092398	45092598	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104387.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.44	4.28	12.55	10.05	11.05	5.33	7.31	8.19	8.85	9.04	7.03	9.4
Merged-chr2-122184077-2	chr2	122184002	122184202	+	806.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026251, intron 1 of 17)	RLTR35B_MM|LTR|ERVL	2087.0	NM_026251	67578.0	Mm.150462	NM_026251	ENSMUSG00000027233	Patl2	4930424G05Rik|Pat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding	1.62	8.8	12.55	14.08	15.96	9.72	7.64	12.48	0.59	2.51	1.0	4.7
Merged-chr10-56339261-3	chr10	56339181	56339381	+	806.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38019.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	10.09	10.06	3.99	15.28	13.91	5.02	12.62	13.57	15.14	12.05	18.59	9.08
Merged-chr4-129575405-3	chr4	129575327	129575527	+	806.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1786.0	NM_001162433	16818.0	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	12.52	3.77	3.42	12.07	19.23	15.05	13.29	13.4	9.05	8.54	10.05	5.64
Merged-chr8-46883443-3	chr8	46883330	46883530	+	806.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103457.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	10.5	11.07	7.99	10.86	12.27	11.29	4.65	12.67	11.21	11.05	20.1	14.1
Merged-chr3-84773101-1	chr3	84773001	84773201	+	806.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42476.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.25	2.52	8.56	4.02	10.64	10.35	10.96	8.61	6.49	2.51	9.04	5.64
Merged-chr4-120857203-3	chr4	120857095	120857295	+	806.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	2396.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	13.73	8.3	20.54	10.86	6.14	2.82	7.64	11.92	12.0	16.07	25.63	13.78
Merged-chr15-96757647-2	chr15	96757547	96757747	+	806.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57919.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.46	9.56	6.85	8.04	18.41	15.99	8.64	13.26	4.33	3.51	6.03	6.89
Merged-chr7-105787549-2	chr7	105787468	105787668	+	806.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162943)	promoter-TSS (NM_001162943)	-18.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	9.29	8.3	5.13	3.62	3.68	4.08	9.97	9.5	6.49	8.03	12.06	3.13
Merged-chrX-60345640-3	chrX	60345550	60345750	+	806.1444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	48842.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	9.29	8.55	10.27	11.26	18.41	16.31	8.3	10.6	18.1	16.57	15.07	7.21
Merged-chr3-35764834-3	chr3	35764749	35764949	+	806.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151627, intron 1 of 31)	intron (NR_151627, intron 1 of 31)	10786.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	5.25	16.85	10.27	7.64	10.64	4.39	3.32	6.31	23.41	28.62	7.54	15.04
Merged-chr17-17739260-3	chr17	17739151	17739351	+	806.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9E|LTR|ERVK	35310.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	3.23	3.77	13.69	10.86	1.64	13.48	4.65	8.38	8.65	3.01	18.59	8.46
Merged-chr3-8691580-3	chr3	8691495	8691695	+	806.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-24557.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	5.65	7.29	2.85	4.83	12.68	5.96	10.96	9.03	10.42	3.51	15.58	18.48
Merged-chr16-8738081-3	chr16	8737991	8738191	+	806.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003918, intron 1 of 30)	CpG	251.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	8.48	4.02	8.56	16.49	10.64	7.53	9.3	8.1	10.42	9.54	20.6	16.29
Merged-chr6-116456008-3	chr6	116455924	116456124	+	806.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	5154.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	18.57	6.79	15.97	27.35	31.09	31.67	36.21	39.0	7.28	10.04	20.1	6.58
Merged-chr4-102655557-3	chr4	102655451	102655651	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65708.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	12.52	11.82	26.81	24.13	15.96	12.54	25.58	19.49	15.93	6.03	8.54	4.07
Merged-chr9-97115743-3	chr9	97115616	97115816	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4675.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	8.88	5.79	3.42	6.03	12.68	14.42	17.27	12.06	13.18	18.58	17.08	11.59
Merged-chr6-13672914-3	chr6	13672820	13673020	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175312, intron 1 of 4)	B2_Mm2|SINE|B2	5046.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	8.48	7.55	3.99	6.03	10.23	12.23	4.32	11.27	14.16	24.6	10.05	7.21
Merged-chr12-111843167-3	chr12	111843019	111843219	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 7 of 16)	intron (NM_011625, intron 7 of 16)	28949.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	4.85	4.53	11.98	8.85	11.45	10.98	12.95	9.45	9.83	4.02	16.08	7.83
Merged-chr9-50565335-3	chr9	50565248	50565448	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-4080.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	11.71	9.81	3.99	16.09	12.68	10.66	8.97	12.08	18.29	10.54	16.08	7.83
Merged-chr8-85036107-3	chr8	85035968	85036168	+	806.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145390)	promoter-TSS (NM_145390)	-847.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	6.46	5.28	5.7	7.64	9.41	7.84	5.65	9.87	20.46	13.56	15.58	10.02
Merged-chr16-32323946-4	chr16	32323860	32324060	+	806.020813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8292.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	13.73	4.78	9.7	8.45	6.95	5.33	2.66	8.72	7.47	7.53	14.57	3.76
Merged-chr6-5050033-2	chr6	5049932	5050132	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 3 of 15)	CT-rich|Low_complexity|Low_complexity	143914.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	10.9	6.04	6.28	8.04	9.41	5.96	11.29	13.4	12.0	4.52	11.05	12.84
Merged-chr5-32690071-1	chr5	32689971	32690171	+	806.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56271.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.81	1.51	2.85	10.86	5.32	1.57	1.33	2.78	11.21	7.03	12.56	4.7
Merged-chr15-36876079-1	chr15	36875979	36876179	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-79150.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	1.21	1.01	2.28	5.63	0.82	2.51	6.64	6.76	3.54	7.53	3.52	1.88
Merged-chr11-54755582-1	chr11	54755482	54755682	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 2 of 5)	intron (NM_178626, intron 2 of 5)	32121.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	1.62	3.27	5.13	10.05	3.68	6.59	4.98	9.08	3.74	4.52	10.05	5.95
Merged-chr6-83646890-1	chr6	83646790	83646990	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016751, exon 5 of 7)	exon (NM_016751, exon 5 of 7)	9226.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.42	2.52	1.14	2.41	1.64	1.57	6.64	6.08	3.54	4.52	0.0	1.25
Merged-chrX-129645297-1	chrX	129645197	129645397	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104445.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.81	2.52	0.0	3.22	1.64	1.25	6.31	9.11	1.97	1.0	7.03	0.63
Merged-chrX-100494754-1	chrX	100494654	100494854	+	806.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008784, intron 1 of 5)	intron (NM_008784, intron 1 of 5)	463.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	6.86	3.52	1.71	9.25	4.91	2.51	3.65	5.07	5.9	13.56	7.03	9.71
Merged-chr13-45107671-1	chr13	45107571	45107771	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-105575.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.44	6.29	13.69	8.85	5.32	6.27	9.3	12.59	1.77	0.0	0.5	0.94
Merged-chr11-70958210-1	chr11	70958110	70958310	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083331, intron 5 of 16)	intron (NM_001083331, intron 5 of 16)	11763.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	5.65	3.77	2.85	0.8	4.5	2.51	5.65	5.02	4.33	1.51	2.51	2.82
Merged-chr2-155764854-3	chr2	155764735	155764935	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10507.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	9.29	8.3	5.13	12.47	7.36	9.41	12.95	10.79	19.87	8.54	21.61	14.1
Merged-chr11-21994067-1	chr11	21993967	21994167	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011023)	TTS (NM_011023)	7584.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	6.46	2.52	3.99	2.41	1.64	7.84	6.64	7.04	4.33	3.51	3.52	3.13
Merged-chr14-14843228-3	chr14	14843115	14843315	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 7 of 34)	intron (NM_001195229, intron 7 of 34)	22400.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.46	8.55	12.55	4.02	19.23	23.52	22.26	26.41	7.28	10.04	16.08	3.76
Merged-chr5-65931479-1	chr5	65931379	65931579	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35645.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	2.83	5.03	4.56	6.84	8.18	6.59	6.98	12.56	5.11	8.54	19.09	4.7
Merged-chr16-8768843-2	chr16	8768727	8768927	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30485.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	9.69	3.77	9.13	7.64	15.14	11.92	10.63	12.93	14.36	4.02	8.54	7.83
Merged-chr2-32009013-1	chr2	32008913	32009113	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172268, intron 18 of 35)	intron (NM_172268, intron 18 of 35)	34563.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	3.63	3.02	2.28	12.87	0.0	2.51	5.98	12.93	5.31	1.51	8.04	8.14
Merged-chr7-81828943-2	chr7	81828852	81829052	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146193, intron 1 of 7)	CpG	479.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	5.65	14.59	10.27	7.24	11.45	12.23	5.65	10.96	11.21	14.56	11.56	11.59
Merged-chr13-59761071-1	chr13	59760971	59761171	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026921, intron 2 of 3)	intron (NM_026921, intron 2 of 3)	8718.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	4.04	2.77	7.99	10.86	4.5	6.27	7.64	14.64	6.1	7.53	13.57	5.64
Merged-chr2-92460376-1	chr2	92460276	92460476	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	142.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	11.71	3.52	1.71	1.61	5.32	3.76	5.65	5.24	5.11	5.02	2.51	2.51
Merged-chr10-94357623-1	chr10	94357523	94357723	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45674.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	1.62	4.02	0.0	5.23	5.32	10.35	2.66	0.93	4.52	2.51	0.5	0.94
Merged-chr17-35266294-1	chr17	35266194	35266394	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010380, exon 5 of 8)	exon (NM_010380, exon 5 of 8)	3171.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	8.88	8.3	1.71	1.21	3.27	3.76	1.66	0.42	4.13	4.52	2.51	0.94
Merged-chr11-61564208-2	chr11	61564102	61564302	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	15485.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	4.44	2.01	14.26	14.08	8.18	4.08	10.96	10.96	8.26	3.01	11.56	5.64
Merged-chr12-117427558-2	chr12	117427430	117427630	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-88949.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	8.08	4.53	11.41	1.61	2.45	3.76	1.66	4.21	6.49	5.52	9.55	1.25
Merged-chr2-6696491-1	chr2	6696391	6696591	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	Lx8b|LINE|L1	25171.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.63	2.52	5.7	6.84	9.0	2.51	1.33	8.38	10.23	4.52	4.02	4.39
Merged-chr18-20735617-2	chr18	20735521	20735721	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10783.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.86	9.31	12.55	12.47	8.18	9.41	3.99	11.69	9.64	8.03	11.56	3.13
Merged-chr5-137314242-1	chr5	137314142	137314342	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011639)	promoter-TSS (NM_011639)	-1.0	NM_011639	22051.0	Mm.27063	NM_011639	ENSMUSG00000023348	Trip6	-	thyroid hormone receptor interactor 6	protein-coding	5.65	4.78	4.56	1.21	9.41	3.45	2.99	4.99	4.72	8.54	4.52	3.76
Merged-chr10-75105823-1	chr10	75105723	75105923	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081412, intron 1 of 22)	MER58A|DNA|hAT-Charlie	44927.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	5.65	4.53	6.28	14.88	5.32	6.27	3.65	19.51	7.47	4.52	14.07	11.28
Merged-chr13-101766217-1	chr13	101766117	101766317	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.81	4.78	4.56	7.64	2.86	2.51	6.98	6.03	2.16	1.51	7.54	2.82
Merged-chr1-35862522-1	chr1	35862422	35862622	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-205878.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.46	9.56	3.99	9.25	2.86	0.0	2.66	2.78	3.15	0.0	4.52	4.39
Merged-chr10-88204466-1	chr10	88204366	88204566	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026070, intron 2 of 6)	MERVL_2A-int|LTR|ERVL	3369.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	2.42	3.52	7.99	6.84	7.77	8.78	6.64	9.42	4.33	2.01	5.02	3.45
Merged-chr7-29383527-1	chr7	29383427	29383627	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081028, intron 8 of 22)	intron (NM_001081028, intron 8 of 22)	79522.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	5.25	10.82	3.99	1.21	11.45	8.15	2.99	8.61	5.31	2.01	4.52	2.19
Merged-chr4-12305421-1	chr4	12305321	12305521	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133406.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.85	7.8	3.42	4.02	3.68	7.53	9.63	7.77	4.33	12.55	10.55	6.89
Merged-chr10-128578449-1	chr10	128578349	128578549	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010153, exon 12 of 28)	exon (NM_010153, exon 12 of 28)	6048.0	NR_105882	102465553.0		NR_105882	ENSMUSG00000098592	Mir6917	Gm27633|mmu-mir-6917	microRNA 6917	ncRNA	7.27	5.03	5.13	4.02	4.09	6.59	3.32	10.15	6.49	6.53	6.03	9.4
Merged-chr4-43492387-3	chr4	43492274	43492474	+	805.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	685.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	9.29	16.85	7.99	15.28	14.32	11.6	5.98	8.41	27.14	17.07	16.08	19.74
Merged-chr2-168625221-2	chr2	168625115	168625315	+	805.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15544.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	12.52	4.78	13.12	12.87	9.0	7.84	13.29	20.44	2.95	3.51	6.53	1.88
Merged-chr15-89131562-3	chr15	89131457	89131657	+	805.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013871, intron 11 of 11)	intron (NM_013871, intron 11 of 11)	-2857.0	NR_028449	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	10.9	16.35	26.81	15.69	13.91	14.74	5.31	13.21	12.0	6.03	6.53	6.27
Merged-chr5-101938740-3	chr5	101938626	101938826	+	805.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	131195.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	11.71	9.81	17.68	4.83	8.59	8.47	6.64	10.07	9.44	10.04	20.1	6.58
Merged-chr19-55767432-3	chr19	55767324	55767524	+	805.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	25614.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	9.69	9.81	15.97	6.03	14.73	18.19	11.63	9.22	15.14	11.05	16.08	5.33
Merged-chr19-5796199-4	chr19	5796086	5796286	+	805.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144621)	promoter-TSS (NR_144621)	-205.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	7.27	11.82	9.13	6.44	8.59	10.03	3.32	3.7	11.01	17.57	3.52	11.59
Merged-chr8-126920602-3	chr8	126920529	126920729	+	805.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25292.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	8.88	9.06	12.55	8.04	13.09	11.92	13.95	10.99	14.75	5.02	12.56	13.47
Merged-chr3-79114417-2	chr3	79114320	79114520	+	805.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	L2c|LINE|L2	30467.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.04	6.79	4.56	6.44	8.59	6.9	7.97	4.88	17.31	18.08	24.12	5.95
Merged-chr17-86685442-2	chr17	86685347	86685547	+	805.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68417.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.04	4.02	2.28	4.83	13.91	9.41	9.3	6.56	14.55	14.56	21.1	10.65
Merged-chr15-58145449-3	chr15	58145354	58145554	+	805.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	4088.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	10.5	10.56	4.56	8.45	11.45	13.48	1.33	7.01	10.03	17.57	14.07	8.46
Merged-chr10-5208501-1	chr10	5208401	5208601	+	805.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347711, intron 86 of 145)	intron (NM_001347711, intron 86 of 145)	-13794.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	2.42	1.01	0.0	4.02	18.82	7.84	7.97	11.1	4.52	5.52	11.56	3.76
Merged-chr9-60758057-1	chr9	60757957	60758157	+	805.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36385.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.23	8.55	6.28	6.03	9.82	11.6	7.97	7.07	5.7	1.0	4.52	7.21
Merged-chr15-50708407-3	chr15	50708315	50708515	+	805.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	180634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	10.5	9.31	11.41	11.26	22.09	16.31	12.95	19.77	8.46	10.54	12.56	5.64
Merged-chr7-3614195-1	chr7	3614095	3614295	+	805.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175632, intron 2 of 4)	intron (NM_175632, intron 2 of 4)	1962.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	6.46	5.03	5.13	0.8	9.82	13.8	7.97	8.05	12.0	6.53	4.52	0.63
Merged-chr9-44477919-2	chr9	44477823	44478023	+	805.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4902.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	8.88	3.02	3.42	8.85	7.77	9.72	3.32	4.57	16.72	17.07	15.07	12.22
Merged-chr4-6372437-3	chr4	6372292	6372492	+	805.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	6712.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.65	1.51	1.14	16.09	5.73	4.39	7.64	6.79	9.44	14.56	5.02	2.82
Merged-chr10-77608776-2	chr10	77608670	77608870	+	805.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	2172.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	10.9	3.77	12.55	10.05	10.23	14.11	5.31	15.08	7.08	4.02	15.58	8.77
Merged-chr7-100991147-3	chr7	100991046	100991246	+	805.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20852.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	8.48	7.04	9.7	10.46	15.55	11.92	14.62	19.09	18.49	23.6	24.12	8.14
Merged-chr19-16110816-3	chr19	16110716	16110916	+	805.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22015.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	12.52	13.33	13.12	4.42	6.55	13.48	5.31	5.69	24.98	28.12	15.07	10.96
Merged-chr17-50795662-3	chr17	50795564	50795764	+	805.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 17 of 21)	intron (NM_028162, intron 17 of 21)	96983.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	18.57	7.8	2.85	7.24	15.55	7.53	8.3	9.73	14.75	15.57	12.56	9.71
Merged-chr1-192727166-1	chr1	192727066	192727266	+	805.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 5 of 11)	intron (NM_144881, intron 5 of 11)	44053.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.63	1.51	5.7	0.8	3.68	5.33	2.99	3.5	13.77	3.51	17.08	9.4
Merged-chr19-11053233-3	chr19	11053150	11053350	+	805.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2684.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	8.88	10.31	18.83	8.85	9.41	15.37	7.31	13.01	11.8	12.55	22.11	6.27
Merged-chr18-38246238-1	chr18	38246138	38246338	+	805.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	3960.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.81	0.5	7.99	2.82	12.27	11.92	6.31	22.18	1.57	3.01	6.03	3.76
Merged-chr8-71298695-3	chr8	71298603	71298803	+	805.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	L1MB5|LINE|L1	25989.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	10.09	7.55	7.42	5.63	9.0	16.62	11.63	19.77	12.78	15.57	23.62	16.92
Merged-chr1-171453119-2	chr1	171453014	171453214	+	805.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	15553.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	9.69	5.79	6.28	2.41	13.5	10.35	3.32	8.13	11.01	11.55	9.04	5.64
Merged-chr6-127153555-2	chr6	127153432	127153632	+	805.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-2484.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	14.94	8.3	9.13	9.65	4.09	1.88	8.64	4.51	4.33	4.52	4.02	6.27
Merged-chr11-79293180-3	chr11	79293076	79293276	+	805.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38481.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	30.28	6.29	27.38	11.66	17.18	10.03	6.31	8.24	15.34	15.57	12.56	13.47
Merged-chr2-35444626-3	chr2	35444542	35444742	+	805.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	16807.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	20.59	15.59	22.82	16.09	10.64	9.72	7.31	13.04	5.11	5.52	13.06	7.52
Merged-chr10-80756291-3	chr10	80756192	80756392	+	805.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1089.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	6.86	9.81	13.12	2.82	11.45	10.98	8.3	4.4	15.14	18.58	20.6	10.02
Merged-chr11-55449491-2	chr11	55449405	55449605	+	805.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11703.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	8.48	7.8	12.55	7.24	12.68	5.64	8.97	8.07	7.28	5.52	5.53	1.57
Merged-chr11-71850609-3	chr11	71850524	71850724	+	805.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	89498.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	9.69	3.02	11.41	10.46	10.23	5.96	13.29	23.27	15.34	5.52	17.59	12.22
Merged-chr11-63790439-3	chr11	63790351	63790551	+	805.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131833.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	12.52	12.32	12.55	11.66	6.55	12.86	7.31	8.92	9.44	12.05	14.07	12.22
Merged-chr1-67363906-2	chr1	67363832	67364032	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	240905.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	2.52	3.42	0.8	16.77	22.89	12.62	24.25	6.69	7.03	12.56	12.53
Merged-chr10-94310880-1	chr10	94310780	94310980	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1069.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.06	3.52	5.7	7.64	8.18	13.17	1.99	9.45	0.79	2.01	2.01	0.0
Merged-chr4-124704102-2	chr4	124703983	124704183	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	3384.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	6.86	6.29	6.28	4.42	6.95	5.02	4.32	7.07	10.82	12.05	6.03	9.71
Merged-chr13-51388325-1	chr13	51388225	51388425	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-20293.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.23	6.04	3.42	8.85	4.5	4.39	7.64	6.36	2.36	3.51	4.52	5.95
Merged-chr1-55821293-1	chr1	55821193	55821393	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109948.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.02	2.26	6.85	2.41	8.59	8.47	16.28	10.04	4.92	1.0	5.02	3.76
Merged-chr14-25855477-2	chr14	25855445	25855645	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	5.65	4.02	2.28	3.62	1.64	4.7	2.99	6.95	8.85	6.53	5.53	3.13
Merged-chr13-34282255-1	chr13	34282155	34282355	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	62927.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.25	3.02	11.98	6.03	9.82	5.64	13.62	9.98	5.11	4.02	14.07	5.33
Merged-chr15-64287734-2	chr15	64287627	64287827	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	24946.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	9.29	4.53	14.26	13.67	9.82	3.14	10.96	15.73	6.49	3.01	10.05	5.01
Merged-chr16-21216203-3	chr16	21216084	21216284	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010143, intron 3 of 15)	intron (NM_010143, intron 3 of 15)	11389.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	5.65	15.34	2.85	14.08	1.64	9.09	4.98	9.42	8.85	13.56	17.08	7.83
Merged-chr3-27616585-1	chr3	27616485	27616685	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-31590.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	2.83	4.78	2.28	3.22	4.91	7.84	1.99	7.88	6.49	6.03	5.02	13.16
Merged-chr10-88350034-3	chr10	88349934	88350134	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	7041.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	8.88	4.53	9.7	16.89	20.46	12.54	14.62	21.93	15.74	11.05	23.11	8.77
Merged-chr7-66310118-3	chr7	66310031	66310231	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	71593.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	6.86	11.07	14.83	5.63	2.05	14.74	2.66	5.72	14.75	12.05	9.04	11.9
Merged-chr2-181592694-5	chr2	181592651	181592851	+	805.486694	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164597)	promoter-TSS (NM_001164597)	-290.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	8.88	9.56	9.13	4.83	8.18	10.66	4.65	7.37	9.64	5.02	13.57	7.52
Merged-chr9-94512999-3	chr9	94512887	94513087	+	805.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	25094.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	9.69	15.09	5.13	4.83	24.96	24.77	13.62	4.32	13.57	17.57	19.09	5.64
Merged-chr2-163764007-2	chr2	163763906	163764106	+	805.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13767.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	10.09	6.04	18.83	9.65	10.64	14.11	7.31	20.97	1.38	1.51	0.0	1.57
Merged-chr17-24742274-6	chr17	24742190	24742390	+	805.402771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001346668, exon 4 of 4)	3' UTR (NM_001346668, exon 4 of 4)	5697.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	2.42	3.52	6.28	5.23	1.64	2.82	1.33	1.46	6.1	5.52	2.51	2.19
Merged-chr17-31090025-3	chr17	31089932	31090132	+	805.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32338.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	9.29	9.81	11.98	3.62	14.73	19.76	17.61	28.15	11.21	11.55	15.58	6.89
Merged-chr18-37928034-3	chr18	37927931	37928131	+	805.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	MIR3|SINE|MIR	7445.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	6.46	10.06	2.28	9.65	11.05	13.8	8.97	11.78	13.57	26.61	21.61	19.74
Merged-chr2-45100286-2	chr2	45100186	45100386	+	805.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9991.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.04	6.04	5.7	8.85	10.23	11.92	5.98	8.75	11.41	14.56	6.03	6.27
Merged-chr9-113729172-2	chr9	113729050	113729250	+	805.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12323.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.23	8.8	5.7	2.41	6.55	8.78	5.31	10.63	20.26	10.54	18.59	10.96
Merged-chr19-47356659-2	chr19	47356561	47356761	+	805.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-83072.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	12.52	11.57	13.12	7.64	6.55	11.6	3.99	10.15	6.1	13.05	10.55	4.07
Merged-chr10-44630642-2	chr10	44630546	44630746	+	805.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-171898.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.04	5.53	2.85	4.02	6.55	13.48	7.64	13.6	12.98	8.54	11.56	7.83
Merged-chr7-27209216-2	chr7	27209181	27209381	+	805.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181593, intron 6 of 6)	intron (NM_181593, intron 6 of 6)	3745.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	4.85	5.03	2.85	6.44	6.95	5.64	5.31	8.5	4.72	2.01	8.54	5.33
Merged-chrX-70957109-3	chrX	70957017	70957217	+	805.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93139.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	9.69	4.53	7.99	15.28	12.68	3.76	12.29	11.75	13.57	15.06	9.04	7.52
Merged-chr3-69185346-1	chr3	69185246	69185446	+	805.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37073.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.04	7.04	3.99	8.85	7.77	9.09	8.3	8.66	3.93	6.03	14.57	4.7
Merged-chr7-122520498-3	chr7	122520400	122520600	+	805.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-151244.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	8.88	3.77	12.55	10.86	7.77	2.51	6.64	10.18	4.33	7.03	17.08	12.84
Merged-chr13-13589590-3	chr13	13589506	13589706	+	805.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-803.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.63	8.3	9.13	4.02	8.59	10.66	7.97	3.81	17.51	6.03	16.58	4.7
Merged-chr7-4491484-1	chr7	4491384	4491584	+	805.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	10196.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	8.88	4.78	2.28	3.62	6.95	5.64	9.97	7.71	3.74	6.03	4.02	1.88
Merged-chr7-34305564-1	chr7	34305464	34305664	+	805.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-19955.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	2.02	2.52	18.83	7.64	9.41	1.25	8.3	9.06	2.36	1.51	5.02	6.58
Merged-chr14-51253759-3	chr14	51253639	51253839	+	805.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	2373.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	18.17	7.04	18.83	24.94	9.82	16.62	15.61	18.0	10.03	8.03	9.55	3.13
Merged-chr3-41587124-3	chr3	41587053	41587253	+	805.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22273.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.65	6.79	8.56	7.64	6.14	4.7	6.31	7.65	11.41	10.04	12.56	7.21
Merged-chr15-8224442-2	chr15	8224368	8224568	+	805.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162906, intron 31 of 52)	MTD|LTR|ERVL-MaLR	55362.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	8.48	7.29	14.83	10.05	14.73	5.64	16.94	16.91	4.52	3.01	15.07	3.76
Merged-chr18-54848911-3	chr18	54848818	54849018	+	805.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141262.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.06	6.29	15.97	13.27	11.45	10.35	12.62	10.29	17.31	12.55	26.13	9.71
Merged-chr4-133157377-3	chr4	133157268	133157468	+	805.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	26735.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.86	6.54	9.7	8.45	11.05	13.17	15.61	8.52	21.44	4.52	14.57	14.1
Merged-chr2-37484371-3	chr2	37484269	37484469	+	805.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033960, intron 6 of 18)	MTC|LTR|ERVL-MaLR	32115.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	10.09	8.8	9.13	12.07	10.64	9.41	7.97	8.02	17.9	15.06	11.56	14.41
Merged-chr17-15715400-2	chr17	15715312	15715512	+	805.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 2 of 35)	B3|SINE|B2	10445.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	3.23	3.27	0.0	1.61	8.59	2.82	5.65	5.89	8.06	7.03	16.08	11.28
Merged-chr14-17713227-2	chr14	17713127	17713327	+	805.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	52267.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.25	5.53	6.28	4.42	9.0	31.04	12.29	8.8	21.24	11.05	21.61	7.83
Merged-chr1-36071389-2	chr1	36071281	36071481	+	805.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2981.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.63	5.28	3.42	2.82	16.77	18.81	10.96	15.06	10.03	18.58	7.54	10.02
Merged-chr8-120124468-3	chr8	120124369	120124569	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	10317.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.44	10.31	8.56	15.69	14.73	10.98	11.29	16.15	9.44	6.53	19.09	10.02
Merged-chr10-57728523-3	chr10	57728419	57728619	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-56404.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.06	14.59	11.41	7.64	11.05	23.83	11.63	13.57	10.62	11.55	22.11	14.41
Merged-chr4-11190790-3	chr4	11190682	11190882	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-569.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	7.67	12.07	7.99	8.85	8.59	8.15	5.98	9.06	21.24	20.08	39.7	5.95
Merged-chr8-94785888-3	chr8	94785776	94785976	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13696.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	11.31	7.29	7.42	14.08	11.86	15.68	2.33	5.24	17.9	16.57	10.05	5.64
Merged-chr5-115509679-5	chr5	115509618	115509818	+	805.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3042.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.44	2.01	16.54	10.05	6.14	6.9	8.97	8.27	9.24	17.57	18.59	11.9
Merged-chr17-74457782-2	chr17	74457688	74457888	+	805.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	1320.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	8.88	10.56	14.26	6.03	14.73	9.41	12.29	13.09	19.47	6.03	10.05	5.33
Merged-chr2-174564076-3	chr2	174563986	174564186	+	805.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79448.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	8.88	9.56	18.83	20.11	10.64	7.53	9.63	13.49	16.72	9.04	10.05	16.6
Merged-chr2-152343562-3	chr2	152343469	152343669	+	805.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175093, intron 1 of 3)	PB1D10|SINE|Alu	491.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	8.48	14.84	7.99	13.27	14.73	19.13	12.29	9.73	20.26	9.54	19.09	7.52
Merged-chr6-30026886-3	chr6	30026799	30026999	+	805.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-21089.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	4.85	9.31	13.12	3.62	2.86	11.29	10.3	12.73	7.47	10.54	16.58	6.27
Merged-chr13-81024715-3	chr13	81024638	81024838	+	805.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60664.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	1.62	10.31	2.28	8.04	9.41	21.32	4.65	1.63	19.08	15.57	15.58	6.27
Merged-chr14-55784049-3	chr14	55783951	55784151	+	805.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361604)	promoter-TSS (NM_001361604)	21.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	8.88	10.31	12.55	12.87	18.82	16.31	7.31	13.15	16.13	12.55	16.08	15.04
Merged-chr10-117150053-3	chr10	117149930	117150130	+	805.094421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1556.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	10.9	5.28	7.99	9.65	8.59	11.92	11.96	9.2	13.96	10.04	10.05	10.65
Merged-chr1-170706248-3	chr1	170706132	170706332	+	805.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	61700.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	13.33	7.8	16.54	12.47	12.68	13.8	7.31	15.25	9.44	12.05	15.58	13.16
Merged-chr9-111039179-2	chr9	111039087	111039287	+	805.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	18057.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.86	7.04	2.85	7.64	7.36	6.9	6.31	6.64	18.49	14.06	27.13	8.77
Merged-chr13-44272913-2	chr13	44272810	44273010	+	805.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-56423.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	4.04	3.52	14.83	11.66	11.45	8.15	6.31	10.93	2.16	5.02	4.52	2.82
Merged-chr1-64615036-3	chr1	64614957	64615157	+	805.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025964, intron 2 of 2)	intron (NM_025964, intron 2 of 2)	2111.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	10.5	10.06	3.42	10.05	8.18	7.84	6.98	9.25	17.7	11.55	14.57	10.02
Merged-chr11-29647955-3	chr11	29647845	29648045	+	805.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44953.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.06	6.29	10.27	13.67	11.86	8.15	9.97	14.19	24.39	19.08	22.61	10.65
Merged-chr17-84352734-3	chr17	84352628	84352828	+	805.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	113480.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	12.52	11.07	25.1	15.69	7.77	8.47	4.32	8.78	8.46	18.08	15.58	9.4
Merged-chr7-33901071-1	chr7	33900971	33901171	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43914.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	4.44	1.51	3.99	6.84	5.73	5.33	4.65	8.64	2.36	0.5	1.0	0.0
Merged-chr14-99932118-1	chr14	99932018	99932218	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010636, intron 5 of 6)	intron (NM_010636, intron 5 of 6)	217678.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	7.67	4.78	3.42	3.22	11.05	5.96	3.32	6.62	5.7	7.53	8.54	4.39
Merged-chr11-78263340-1	chr11	78263240	78263440	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 2 of 38)	intron (NM_001002004, intron 2 of 38)	1586.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	8.88	4.02	2.85	5.63	9.41	3.76	1.99	8.1	8.46	6.53	4.52	5.33
Merged-chr6-117921505-2	chr6	117921388	117921588	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166429, intron 3 of 3)	MER20|DNA|hAT-Charlie	4194.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	5.65	5.79	10.84	5.63	6.14	6.59	1.33	7.65	15.34	15.57	9.04	8.14
Merged-chr3-31403278-1	chr3	31403178	31403378	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92959.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	1.62	2.26	2.28	0.8	6.95	2.82	14.95	28.01	4.52	3.51	5.02	2.51
Merged-chrX-60231132-3	chrX	60231038	60231238	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 28 of 29)	intron (NM_001359002, intron 28 of 29)	-52049.0	NM_001289731	109904.0	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	9.69	7.8	10.84	11.26	14.73	9.41	9.63	14.5	18.49	10.04	23.62	16.29
Merged-chr4-117133473-2	chr4	117133368	117133568	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013807, exon 2 of 15)	exon (NM_013807, exon 2 of 15)	495.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	9.29	9.81	6.28	6.84	13.5	17.87	7.97	12.08	12.98	19.08	22.11	8.14
Merged-chr10-75772872-2	chr10	75772775	75772975	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010027, exon 2 of 3)	exon (NM_010027, exon 2 of 3)	499.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	10.5	5.79	5.13	6.03	5.73	6.27	9.63	9.7	11.41	4.52	13.06	8.46
Merged-chr7-79859135-1	chr7	79859035	79859235	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10925.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	3.23	2.26	1.71	4.02	1.64	2.82	9.3	6.7	1.77	0.0	2.01	0.0
Merged-chr13-81055741-1	chr13	81055641	81055841	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	Lx7|LINE|L1	91667.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.67	2.52	3.99	2.41	5.73	5.33	8.64	12.11	3.54	1.51	8.54	5.01
Merged-chr12-71867631-1	chr12	71867531	71867731	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	MTD|LTR|ERVL-MaLR	-21912.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.81	5.28	2.85	5.63	2.45	7.21	5.98	11.24	4.52	7.03	6.53	4.39
Merged-chr11-82139592-1	chr11	82139492	82139692	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24407.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	3.23	2.01	2.28	1.61	1.23	14.74	4.98	7.29	4.72	1.51	1.0	1.57
Merged-chr7-45744547-2	chr7	45744437	45744637	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017465, intron 1 of 6)	intron (NM_017465, intron 1 of 6)	-2059.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	5.25	7.04	5.7	6.44	6.14	6.59	4.98	4.88	22.23	14.56	24.12	15.04
Merged-chr9-90236894-1	chr9	90236794	90236994	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	33875.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	9.29	5.53	5.13	3.22	6.14	6.9	2.33	7.29	4.33	3.51	9.55	3.76
Merged-chr11-119058861-2	chr11	119058808	119059008	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17995.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.42	5.79	5.7	2.01	3.27	2.51	8.3	1.46	3.34	9.54	11.56	4.07
Merged-chr2-27732987-2	chr2	27732876	27733076	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22393.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	11.31	8.55	4.56	2.82	11.05	4.7	5.98	2.72	16.52	11.55	11.56	7.21
Merged-chr17-67318020-1	chr17	67317920	67318120	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36439.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.62	1.51	1.14	5.63	8.59	5.33	6.64	11.94	6.49	4.02	9.55	2.82
Merged-chr3-121544830-1	chr3	121544730	121544930	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12486.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.85	2.52	2.85	4.83	7.77	6.59	5.31	9.17	6.49	6.53	6.53	8.14
Merged-chr16-95955469-1	chr16	95955369	95955569	+	805.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-26392.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.44	2.77	6.85	6.44	5.73	5.96	3.65	8.16	12.19	5.02	12.56	3.13
Merged-chr12-17762265-1	chr12	17762165	17762365	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71456.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.62	2.52	6.28	5.63	11.86	4.7	3.32	8.94	5.51	13.05	1.0	1.88
Merged-chr13-100002061-2	chr13	100001980	100002180	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030026, intron 1 of 16)	intron (NM_030026, intron 1 of 16)	13559.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	13.33	9.81	6.85	11.66	7.36	7.53	3.99	10.46	6.29	5.52	4.02	7.21
Merged-chr6-145304244-1	chr6	145304144	145304344	+	805.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	53692.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	1.21	3.77	1.14	2.01	4.09	0.94	3.65	4.26	10.23	10.54	14.07	9.08
Merged-chr11-69902155-1	chr11	69902055	69902255	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291119, exon 1 of 28)	exon (NM_001291119, exon 1 of 28)	339.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	3.23	6.54	7.99	8.04	4.91	7.21	8.97	7.23	9.05	4.02	8.04	7.21
Merged-chr5-39927732-1	chr5	39927632	39927832	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-283101.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	4.04	0.0	1.14	3.22	8.18	6.9	3.65	10.26	6.69	6.03	4.52	8.46
Merged-chr10-95330861-1	chr10	95330761	95330961	+	805.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-5415.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	2.02	6.79	6.85	4.42	6.14	5.33	7.97	1.6	12.59	7.03	13.57	7.52
Merged-chr5-76779325-1	chr5	76779225	76779425	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61274.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	2.42	5.03	4.56	3.62	3.68	2.82	6.64	6.03	4.13	0.5	1.0	2.51
Merged-chr9-69442722-1	chr9	69442622	69442822	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10961.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	3.23	2.77	0.0	4.83	2.86	10.03	3.99	6.7	5.7	2.51	9.04	8.14
Merged-chr3-54353454-3	chr3	54353326	54353526	+	804.938904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7681.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	6.46	12.07	9.7	10.86	12.27	14.11	6.98	12.39	14.55	9.54	23.62	9.4
Merged-chr11-80780101-2	chr11	80779994	80780194	+	804.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177390)	promoter-TSS (NM_177390)	-69.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	12.11	2.52	3.99	6.84	9.82	13.48	8.97	12.67	7.08	9.54	15.07	8.14
Merged-chr9-53693919-3	chr9	53693814	53694014	+	804.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	12318.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	19.79	8.3	6.85	9.25	14.32	25.71	11.29	16.6	20.46	11.05	23.62	10.02
Merged-chr10-24622752-3	chr10	24622662	24622862	+	804.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	27320.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.65	9.81	8.56	6.44	10.23	13.8	11.96	17.75	20.65	12.55	18.59	4.7
Merged-chr18-34262974-3	chr18	34262871	34263071	+	804.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	15277.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	10.5	7.29	11.41	5.63	10.23	17.56	10.63	11.1	16.33	9.54	20.1	8.77
Merged-chr3-96026849-2	chr3	96026728	96026928	+	804.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013841, intron 13 of 14)	intron (NM_013841, intron 13 of 14)	-30989.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	8.88	8.3	16.54	20.11	6.14	5.02	11.29	12.9	4.52	1.0	7.54	2.82
Merged-chr19-42148105-5	chr19	42148054	42148254	+	804.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183195, exon 1 of 2)	exon (NM_183195, exon 1 of 2)	765.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	7.67	4.53	7.99	3.22	6.55	9.72	8.3	7.29	4.52	5.52	7.54	8.46
Merged-chr11-86758767-2	chr11	86758634	86758834	+	804.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1167.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	4.85	4.53	0.0	2.41	6.95	5.02	5.98	5.61	10.42	5.02	3.52	5.64
Merged-chr2-152737484-2	chr2	152737370	152737570	+	804.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010495)	TTS (NM_010495)	1219.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.63	6.54	9.13	5.63	6.95	8.15	1.99	5.78	13.37	10.04	15.07	5.01
Merged-chr4-102759652-2	chr4	102759543	102759743	+	804.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-492.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	8.88	11.82	9.13	9.65	19.23	6.9	7.97	13.74	4.33	7.03	6.03	8.46
Merged-chr5-33983494-1	chr5	33983394	33983594	+	804.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033458)	promoter-TSS (NM_001033458)	61.0	NM_001310546	381633.0	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	7.67	1.26	0.57	6.03	6.14	12.54	9.63	6.81	2.56	0.5	0.5	2.51
Merged-chr12-40538478-3	chr12	40538372	40538572	+	804.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92419.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	9.29	7.04	12.55	12.47	11.05	7.53	4.32	17.64	12.19	12.55	14.07	5.95
Merged-chr7-24978930-3	chr7	24978836	24979036	+	804.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290469, exon 22 of 23)	exon (NM_001290469, exon 22 of 23)	-6208.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	7.67	7.55	7.42	8.85	16.36	13.8	10.63	17.58	11.8	7.53	32.16	13.78
Merged-chr8-94995686-1	chr8	94995586	94995786	+	804.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	11287.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	6.46	3.77	6.85	6.44	18.41	13.17	8.3	5.58	9.24	6.03	18.09	5.01
Merged-chr5-99488820-2	chr5	99488748	99488948	+	804.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-235921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.65	3.77	5.7	9.65	9.82	9.41	3.99	12.14	10.42	10.04	4.02	8.14
Merged-chr13-41634677-3	chr13	41634571	41634771	+	804.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163572, exon 3 of 3)	3' UTR (NM_001163572, exon 3 of 3)	28455.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	14.13	7.29	13.12	13.27	10.64	9.41	3.32	9.06	12.59	8.54	9.55	12.53
Merged-chr16-4893675-2	chr16	4893556	4893756	+	804.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	7556.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.65	5.79	3.42	3.22	7.77	7.53	7.31	9.31	10.82	14.56	10.05	8.46
Merged-chr6-51171065-2	chr6	51170976	51171176	+	804.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98834.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	6.46	5.03	6.85	4.42	8.59	8.47	0.66	2.05	25.57	22.59	17.08	9.71
Merged-chr10-81427094-1	chr10	81426994	81427194	+	804.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008688)	promoter-TSS (NM_008688)	79.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	6.46	8.8	4.56	2.41	13.91	11.29	4.32	5.19	6.69	8.54	7.03	5.33
Merged-chr10-96625765-2	chr10	96625679	96625879	+	804.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8778.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	12.92	12.58	5.13	4.02	3.27	17.56	7.64	2.89	7.47	4.52	1.0	1.25
Merged-chr2-175141981-3	chr2	175141865	175142065	+	804.738892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64952.0	NM_001164689	626832.0	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	6.46	6.54	18.83	17.7	15.55	8.78	22.92	8.24	8.65	17.07	16.08	14.72
Merged-chr4-41568718-3	chr4	41568634	41568834	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	793.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	11.71	5.03	1.14	2.82	6.95	15.05	9.63	4.6	37.57	25.61	26.13	14.72
Merged-chr14-51989758-3	chr14	51989666	51989866	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045728)	promoter-TSS (NR_045728)	-937.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	12.11	13.08	13.12	9.25	15.14	10.98	6.98	12.11	6.69	8.54	13.57	7.83
Merged-chr1-138923087-3	chr1	138922967	138923167	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-40642.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	7.27	2.01	9.7	3.22	16.36	13.8	18.27	32.13	13.77	15.57	24.12	6.89
Merged-chr15-3999355-3	chr15	3999262	3999462	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045740, intron 2 of 2)	RLTR17|LTR|ERVK	3323.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	4.04	9.81	10.27	8.85	12.27	12.23	5.31	7.6	12.78	15.06	19.6	10.34
Merged-chr7-90212960-3	chr7	90212870	90213070	+	804.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52462.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.04	8.05	10.84	8.85	4.5	3.45	8.97	9.42	12.0	7.53	17.08	14.41
Merged-chr8-125950460-3	chr8	125950374	125950574	+	804.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40024.0	NM_145608	234878.0	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	6.86	11.57	14.26	2.82	7.36	15.68	5.98	8.97	14.55	7.53	12.06	8.14
Merged-chr14-102906442-3	chr14	102906354	102906554	+	804.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76178.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	8.48	10.06	7.99	14.48	16.36	10.98	17.27	23.41	11.21	11.05	13.06	10.65
Merged-chr9-47688768-1	chr9	47688668	47688868	+	804.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	129440.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	6.86	4.78	4.56	7.64	4.91	9.41	6.31	9.64	3.54	2.51	7.54	4.07
Merged-chr13-76215576-1	chr13	76215476	76215676	+	804.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	116842.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	4.85	6.04	12.55	12.87	10.64	12.23	6.64	14.05	0.39	0.0	1.51	3.45
Merged-chr18-56675580-1	chr18	56675480	56675680	+	804.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32233.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.85	3.77	1.71	3.22	4.09	4.39	3.32	4.04	12.78	2.51	11.05	8.77
Merged-chr7-73451839-2	chr7	73451732	73451932	+	804.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081345, exon 33 of 39)	exon (NM_001081345, exon 33 of 39)	-76058.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	3.23	4.28	11.41	5.23	18.82	15.68	21.26	20.83	11.8	10.54	10.05	7.21
Merged-chr16-4757131-2	chr16	4757030	4757230	+	804.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357050, exon 1 of 6)	exon (NM_001357050, exon 1 of 6)	184.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	2.42	0.25	0.0	1.21	10.23	7.21	16.61	4.99	12.98	24.1	11.05	15.66
Merged-chr6-129366076-3	chr6	129365964	129366164	+	804.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177686)	TTS (NM_177686)	15820.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	6.46	9.31	15.4	4.42	15.96	22.26	10.3	13.43	20.06	13.05	14.57	7.21
Merged-chr4-149520239-3	chr4	149520119	149520319	+	804.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	1978.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	10.09	13.08	11.41	12.07	7.77	13.17	4.98	15.76	11.6	19.08	22.11	8.46
Merged-chr7-16999852-2	chr7	16999751	16999951	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5263.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	5.25	4.02	3.42	3.22	3.68	7.21	2.33	4.6	15.54	9.04	16.58	11.59
Merged-chr17-71093286-2	chr17	71093187	71093387	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	73730.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	7.27	4.78	14.26	7.24	2.45	12.54	15.28	8.55	11.6	11.55	7.03	6.58
Merged-chr10-98780281-2	chr10	98780182	98780382	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134360.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.46	2.77	5.7	3.62	3.68	10.03	6.64	6.81	12.0	6.03	11.56	5.33
Merged-chr10-8460254-2	chr10	8460150	8460350	+	804.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	58575.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.85	3.27	9.7	6.44	3.68	2.2	4.65	8.97	5.7	2.51	10.05	7.21
Merged-chr4-59352620-1	chr4	59352520	59352720	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86013.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.42	5.03	2.28	8.45	3.27	5.96	5.31	10.65	2.75	1.51	0.0	3.76
Merged-chr4-109337001-1	chr4	109336901	109337101	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-6055.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.63	1.01	1.14	0.0	6.55	5.02	7.31	10.23	1.57	0.5	1.51	0.0
Merged-chr15-82125922-1	chr15	82125822	82126022	+	804.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028897, intron 30 of 30)	B2_Mm2|SINE|B2	-2000.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	6.46	4.28	6.85	2.41	0.82	1.25	1.66	1.54	5.51	7.03	4.02	5.95
Merged-chr18-88771277-1	chr18	88771177	88771377	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122930.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.06	2.01	3.42	7.24	8.59	1.88	9.3	14.75	4.92	2.01	9.55	3.76
Merged-chr11-71863343-1	chr11	71863243	71863443	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	76779.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	2.83	1.01	2.28	4.02	9.41	9.09	4.32	12.5	7.47	7.03	18.59	3.76
Merged-chr10-26779051-3	chr10	26778953	26779153	+	804.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	6541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	11.31	6.54	25.67	14.48	19.23	15.99	16.94	26.97	9.64	10.54	14.57	1.57
Merged-chrX-162653718-1	chrX	162653618	162653818	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	Lx8|LINE|L1	-10060.0	NM_001359102	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	1.62	2.26	1.14	1.61	6.55	2.2	9.3	14.36	0.98	2.01	9.55	3.45
Merged-chr2-148443624-2	chr2	148443525	148443725	+	804.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010740)	promoter-TSS (NM_010740)	-90.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	10.09	9.56	3.42	5.23	5.32	4.08	12.95	10.09	5.31	1.0	1.51	4.7
Merged-chr17-31855289-5	chr17	31855157	31855357	+	804.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	547.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	8.48	4.53	14.83	12.47	10.64	2.82	2.66	7.32	12.19	6.53	6.03	12.22
Merged-chr6-129181830-2	chr6	129181725	129181925	+	804.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053109, intron 1 of 4)	intron (NM_053109, intron 1 of 4)	1210.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	1.21	4.53	7.42	3.62	7.36	11.29	7.97	7.49	12.98	18.08	15.07	7.83
Merged-chr3-137954334-3	chr3	137954237	137954437	+	804.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	27212.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	9.69	6.79	6.85	15.28	24.55	13.48	11.96	14.47	18.69	9.04	11.05	10.02
Merged-chr12-32827176-3	chr12	32827081	32827281	+	804.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045032)	TTS (NR_045032)	3065.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	14.54	12.58	11.41	14.08	13.5	23.83	10.96	10.6	25.96	14.56	15.07	6.58
Merged-chr17-28293498-3	chr17	28293400	28293600	+	804.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-19878.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	12.52	6.54	20.54	3.62	14.32	11.6	4.65	10.79	14.75	10.54	12.56	8.46
Merged-chr3-107939596-2	chr3	107939475	107939675	+	804.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	4174.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	5.25	4.78	7.42	12.87	13.09	9.41	13.62	16.18	9.64	16.07	14.07	12.53
Merged-chr3-30823672-2	chr3	30823564	30823764	+	804.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	30788.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	11.31	9.06	10.27	16.49	4.09	4.08	7.64	9.98	2.75	3.51	9.04	18.17
Merged-chr5-23826556-2	chr5	23826443	23826643	+	804.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	17602.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	3.63	6.54	2.85	2.82	13.09	15.37	8.64	7.79	10.23	11.05	14.57	15.98
Merged-chr19-43711311-3	chr19	43711234	43711434	+	804.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	21645.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	6.46	3.52	11.41	10.05	5.73	12.86	6.31	9.62	18.49	15.06	19.09	14.72
Merged-chr7-81578072-3	chr7	81577969	81578169	+	804.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004185, intron 2 of 9)	intron (NM_001004185, intron 2 of 9)	6777.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	8.08	7.04	12.55	2.82	11.45	10.03	7.97	11.52	13.18	12.05	16.58	10.96
Merged-chr13-45922654-2	chr13	45922546	45922746	+	804.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	42345.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	12.11	8.55	14.83	2.41	6.14	16.93	8.3	10.51	1.18	0.0	1.0	2.82
Merged-chr1-164066890-2	chr1	164066787	164066987	+	804.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164059, intron 4 of 7)	intron (NM_001164059, intron 4 of 7)	4811.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.04	3.27	10.84	8.04	7.36	11.6	6.98	10.35	17.11	9.54	12.56	10.65
Merged-chr3-152556641-1	chr3	152556541	152556741	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-110272.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	4.85	5.03	1.71	7.64	7.36	3.45	10.96	9.98	6.88	5.52	12.56	4.7
Merged-chr8-25119736-3	chr8	25119632	25119832	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17553.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.81	8.3	9.13	12.07	6.55	6.9	3.32	6.42	12.0	9.54	19.6	5.33
Merged-chr6-122595852-3	chr6	122595759	122595959	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	6585.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	9.69	10.56	14.83	18.5	15.55	18.19	5.98	7.29	26.16	26.11	25.63	17.23
Merged-chr19-56637355-3	chr19	56637270	56637470	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85002.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	9.29	10.06	19.97	24.94	6.14	9.09	14.28	25.04	6.69	4.02	18.59	8.77
Merged-chr2-153276333-1	chr2	153276233	153276433	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-15083.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.81	1.01	0.0	0.0	6.95	7.53	6.64	7.26	4.52	10.04	5.02	1.57
Merged-chr2-10079759-1	chr2	10079659	10079859	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	751.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	6.06	6.04	3.99	0.8	7.77	10.98	7.64	9.56	10.62	9.04	6.03	4.7
Merged-chr6-113695929-3	chr6	113695835	113696035	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172161)	TTS (NM_172161)	-1115.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	5.65	8.05	6.85	6.03	7.36	18.81	9.97	6.62	13.18	8.03	15.07	4.7
Merged-chr6-54180006-3	chr6	54179905	54180105	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-84853.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	17.36	8.3	16.54	4.42	12.27	7.53	7.97	16.74	9.44	6.03	12.06	4.07
Merged-chr6-87597638-1	chr6	87597538	87597738	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6895.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	7.27	5.79	10.27	6.44	8.18	10.66	8.64	10.29	2.95	5.02	8.54	1.25
Merged-chr10-8238776-1	chr10	8238676	8238876	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	280049.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	1.62	6.79	1.14	2.41	9.41	8.15	3.99	7.12	2.56	5.02	5.53	1.88
Merged-chrX-59999566-2	chrX	59999438	59999638	+	804.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007979)	promoter-TSS (NM_007979)	74.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	2.42	2.26	4.56	5.23	8.18	4.7	9.97	7.51	9.44	3.51	10.55	2.51
Merged-chr19-11999446-3	chr19	11999334	11999534	+	804.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33590.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	12.92	9.81	16.54	8.04	12.27	7.84	8.97	17.38	13.96	7.53	28.64	8.14
Merged-chr3-116205665-3	chr3	116205566	116205766	+	804.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47818.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	8.88	5.79	14.26	5.63	11.05	11.92	9.63	21.67	7.08	2.51	16.58	11.28
Merged-chr11-95333445-3	chr11	95333336	95333536	+	804.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3582.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	11.31	8.05	7.42	10.46	23.32	13.48	12.29	15.5	12.0	14.06	15.58	9.08
Merged-chr2-11203546-3	chr2	11203505	11203705	+	804.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	31223.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	9.69	9.56	11.41	6.44	8.18	4.7	4.65	10.23	11.41	8.54	10.55	13.78
Merged-chrX-134567038-2	chrX	134566942	134567142	+	804.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 4 of 18)	intron (NM_013482, intron 4 of 18)	16098.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.46	7.8	4.56	14.08	13.5	11.29	14.28	19.12	4.13	4.52	8.04	3.13
Merged-chr13-103807533-1	chr13	103807433	103807633	+	804.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-32925.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	2.02	1.76	1.71	1.61	7.77	2.2	8.64	4.54	4.13	8.03	6.53	4.39
Merged-chr15-63922358-3	chr15	63922272	63922472	+	804.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029414, intron 6 of 10)	intron (NR_029414, intron 6 of 10)	7911.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	12.11	8.55	9.13	6.84	10.23	18.5	14.62	5.94	15.93	15.06	16.08	3.76
Merged-chr16-31071021-2	chr16	31070900	31071100	+	804.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	10432.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.85	11.57	8.56	8.45	9.41	6.27	8.97	6.08	14.36	19.08	16.08	8.46
Merged-chr3-153293060-1	chr3	153292960	153293160	+	804.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	5589.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	1.62	1.26	5.7	7.24	9.0	9.72	10.63	8.94	7.67	3.01	7.03	2.19
Merged-chr11-103146598-3	chr11	103146512	103146712	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13253.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	18.57	24.4	9.13	10.05	17.18	26.97	6.64	4.12	9.83	8.03	4.52	7.83
Merged-chr4-109062047-3	chr4	109061959	109062159	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347169)	TTS (NM_001347169)	44404.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	6.46	8.05	13.12	18.9	7.36	5.02	8.3	17.02	11.8	4.52	9.04	8.46
Merged-chr19-41364709-3	chr19	41364599	41364799	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	20371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	10.5	9.06	2.28	4.83	16.36	11.92	14.62	13.71	13.96	16.07	15.07	7.21
Merged-chr2-150669781-3	chr2	150669682	150669882	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040331)	TTS (NR_040331)	-1542.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	16.56	6.79	8.56	12.87	13.09	10.03	12.62	22.01	10.03	7.03	13.06	7.21
Merged-chr13-92053212-2	chr13	92053094	92053294	+	804.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65152.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.81	0.5	2.28	0.8	11.86	18.19	9.63	13.79	2.75	11.05	8.04	5.33
Merged-chr9-66592328-2	chr9	66592175	66592375	+	804.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144937, intron 1 of 14)	CpG	840.0	NM_001302122	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	1.62	8.55	4.56	1.21	4.5	7.53	4.65	4.04	6.88	5.02	11.56	2.19
Merged-chr11-70848652-3	chr11	70848557	70848757	+	804.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	B1_Mus2|SINE|Alu	3896.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	9.29	11.57	14.83	15.28	9.82	13.17	4.98	7.46	8.46	12.05	8.54	11.28
Merged-chr7-98531761-2	chr7	98531655	98531855	+	804.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	37533.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	15.34	15.59	10.84	9.65	8.59	23.83	6.98	3.34	26.16	17.07	18.09	9.4
Merged-chr19-47441739-3	chr19	47441647	47441847	+	804.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	22664.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	24.63	9.31	18.83	14.08	9.0	11.29	5.98	20.66	9.44	13.05	24.62	12.84
Merged-chr11-69258537-3	chr11	69258435	69258635	+	804.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21513.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	10.5	7.04	7.42	7.24	7.77	9.09	7.64	10.46	21.24	13.56	21.61	10.02
Merged-chrX-152164219-3	chrX	152164121	152164321	+	804.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	MIR3|SINE|MIR	-14788.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	12.11	10.06	15.97	16.49	9.82	10.66	9.63	19.23	8.65	12.55	18.59	4.39
Merged-chr6-121191793-3	chr6	121191698	121191898	+	804.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304773, intron 4 of 4)	intron (NM_001304773, intron 4 of 4)	8131.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	6.06	10.82	15.4	14.08	12.68	7.21	6.64	7.63	21.05	19.08	41.71	7.83
Merged-chr8-3460954-1	chr8	3460854	3461054	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026951, intron 3 of 4)	MLTR11B|LTR|ERVK	6694.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	3.63	6.29	2.28	0.0	4.5	4.7	8.3	10.21	6.69	8.03	5.53	7.52
Merged-chr2-63510703-2	chr2	63510602	63510802	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64586.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0.0	5.03	12.55	2.82	4.91	12.23	1.0	8.75	11.21	3.01	18.59	6.58
Merged-chr10-46141173-1	chr10	46141073	46141273	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103575.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.81	1.01	2.28	0.8	6.55	3.45	4.65	8.92	6.88	6.53	6.03	3.45
Merged-chr3-108113850-2	chr3	108113782	108113982	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	20816.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	3.23	1.01	0.0	9.65	14.32	9.41	9.63	10.65	4.92	2.51	3.52	5.01
Merged-chr18-4910048-1	chr18	4909948	4910148	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR40b|LTR|ERVL	97562.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	1.21	3.77	6.85	2.82	4.09	2.82	5.65	6.34	2.36	2.01	2.51	3.76
Merged-chr4-137815709-2	chr4	137815613	137815813	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-19329.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	13.73	6.29	23.39	8.04	4.91	14.42	5.31	9.76	11.01	0.5	1.51	2.82
Merged-chr7-4717093-1	chr7	4716993	4717193	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001142792, intron 5 of 5)	intron (NM_001142792, intron 5 of 5)	7989.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	10.09	11.07	3.99	2.82	2.45	1.88	1.99	1.88	10.03	11.05	0.5	2.19
Merged-chr2-26139790-1	chr2	26139690	26139890	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001256522)	promoter-TSS (NM_001256522)	-247.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	13.33	12.32	10.84	15.69	13.91	9.72	8.64	3.31	13.96	12.05	13.57	9.08
Merged-chr2-13407474-1	chr2	13407374	13407574	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	84402.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	10.5	5.03	4.56	8.85	6.95	8.47	2.66	8.1	4.92	5.52	6.53	10.02
Merged-chr7-81058915-1	chr7	81058815	81059015	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054085, intron 1 of 13)	intron (NM_054085, intron 1 of 13)	1315.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	14.13	5.03	7.42	7.24	12.68	6.9	11.29	7.15	3.74	5.52	7.54	2.51
Merged-chr8-56767352-1	chr8	56767252	56767452	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	216218.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.4	0.5	0.0	0.0	6.95	3.14	6.31	11.3	0.0	0.0	3.01	0.0
Merged-chr5-125275420-1	chr5	125275320	125275520	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65674.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	9.69	5.79	0.0	3.62	3.27	4.39	4.98	8.89	3.34	2.01	2.01	0.63
Merged-chr4-119233708-1	chr4	119233608	119233808	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001042411)	promoter-TSS (NM_001042411)	-121.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	6.46	1.76	1.14	4.83	13.5	5.33	5.98	7.99	5.7	6.53	8.54	4.07
Merged-chr4-41304503-2	chr4	41304398	41304598	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	10403.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	8.48	5.03	14.83	10.86	13.91	2.2	2.66	13.51	9.05	4.52	7.54	8.14
Merged-chr9-55283736-1	chr9	55283636	55283836	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_032002)	promoter-TSS (NM_032002)	-111.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	2.83	2.52	3.99	6.44	6.95	8.47	5.31	8.19	8.26	10.04	9.04	2.19
Merged-chr7-136377970-2	chr7	136377878	136378078	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	-28563.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	8.08	3.77	4.56	4.42	9.41	7.53	6.98	9.42	23.41	25.11	27.13	9.4
Merged-chr6-29912887-2	chr6	29912779	29912979	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_021414)	TTS (NM_021414)	-4134.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	3.23	6.04	13.69	15.28	4.09	5.96	4.98	14.1	8.26	10.54	9.04	10.34
Merged-chr10-80666228-1	chr10	80666128	80666328	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9157.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	6.46	21.88	3.42	0.0	10.23	13.17	0.33	2.1	10.42	19.08	2.01	2.19
Merged-chr14-34644087-1	chr14	34643987	34644187	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9487.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	2.42	3.02	2.28	1.61	3.68	7.84	6.31	8.44	2.16	6.53	6.53	2.82
Merged-chr16-11313893-2	chr16	11313793	11313993	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011608)	promoter-TSS (NM_011608)	84.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	12.11	6.54	9.13	2.01	18.0	10.03	3.65	11.16	18.69	9.54	10.05	6.89
Merged-chr5-77286782-2	chr5	77286676	77286876	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14019.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	10.9	4.78	2.85	12.47	4.5	3.45	13.62	18.17	7.87	1.51	14.07	4.7
Merged-chr2-18694825-1	chr2	18694725	18694925	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-4197.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	11.71	4.78	5.13	15.28	2.05	3.14	7.64	5.78	6.29	8.03	3.01	3.45
Merged-chr8-106148491-2	chr8	106148388	106148588	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1866.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	9.29	7.04	6.85	10.46	9.0	7.53	9.63	8.58	13.96	16.07	19.6	4.39
Merged-chr15-51644464-1	chr15	51644364	51644564	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	220997.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	5.65	4.02	14.83	14.08	1.64	2.82	1.99	4.15	0.39	0.0	0.0	0.94
Merged-chr10-30843908-1	chr10	30843808	30844008	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1125.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	3.23	2.01	0.0	0.8	1.23	2.82	2.66	4.4	3.74	2.01	4.02	2.51
Merged-chr6-129515296-1	chr6	129515196	129515396	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	2739.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.81	3.52	0.0	1.61	4.09	2.51	6.31	6.31	5.31	3.01	0.0	0.31
Merged-chr19-53428056-1	chr19	53427956	53428156	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36740.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.65	2.26	7.99	5.63	4.09	2.82	5.98	7.71	0.98	1.0	1.51	1.57
Merged-chr12-55388969-1	chr12	55388869	55389069	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	4747.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.04	2.26	0.57	5.23	5.73	6.59	7.97	7.37	12.0	10.04	4.52	4.07
Merged-chr6-86671013-3	chr6	86670906	86671106	+	803.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1847.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	14.94	10.06	10.27	9.65	20.46	10.35	3.65	13.12	15.34	17.07	9.55	8.46
Merged-chr2-148586844-2	chr2	148586728	148586928	+	803.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85787.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.86	4.02	5.7	6.44	7.77	9.72	15.28	9.9	15.74	14.56	11.05	5.64
Merged-chr5-130089381-3	chr5	130089271	130089471	+	803.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10001.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	5.25	5.79	10.84	18.1	14.73	12.23	9.63	11.21	11.6	13.56	13.06	8.46
Merged-chr11-107547800-3	chr11	107547656	107547856	+	803.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-204.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	7.27	8.8	10.84	9.25	8.18	3.45	4.32	4.79	8.65	17.07	8.54	1.57
Merged-chr7-96730557-3	chr7	96730459	96730659	+	803.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 9 of 32)	intron (NM_011858, intron 9 of 32)	70990.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	14.94	12.58	10.84	8.04	15.96	5.96	17.61	22.74	10.03	10.54	25.63	5.64
Merged-chr1-136625518-4	chr1	136625468	136625668	+	803.924988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	667.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	8.08	6.79	18.83	4.42	8.59	7.84	18.6	10.79	21.24	13.05	16.08	12.53
Merged-chr1-87549533-3	chr1	87549468	87549668	+	803.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111314, intron 1 of 14)	MTE2b|LTR|ERVL-MaLR	24302.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	7.27	4.02	7.99	8.45	10.23	6.59	9.97	18.56	16.92	9.04	24.12	17.23
Merged-chr7-19665574-4	chr7	19665511	19665711	+	803.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-581.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	11.71	10.56	4.56	9.65	6.95	4.39	6.31	3.9	14.16	9.54	8.54	5.01
Merged-chr2-131196717-3	chr2	131196613	131196813	+	803.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111075, intron 13 of 14)	intron (NM_001111075, intron 13 of 14)	9765.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	9.69	8.55	5.7	7.64	10.23	12.54	4.65	8.58	13.37	9.04	17.08	11.28
Merged-chr9-61982080-3	chr9	61981996	61982196	+	803.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-35297.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	13.73	8.3	19.97	10.05	9.0	10.98	5.31	15.59	12.78	16.07	8.54	7.52
Merged-chr4-55630433-2	chr4	55630324	55630524	+	803.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97949.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.67	8.05	17.11	10.46	17.18	9.72	12.95	16.57	5.9	7.53	11.56	7.52
Merged-chr5-35730055-3	chr5	35729946	35730146	+	803.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-770.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	10.09	10.56	9.7	4.42	21.27	20.07	7.31	12.11	18.29	3.01	11.56	8.77
Merged-chr7-101230466-2	chr7	101230372	101230572	+	803.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	71616.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	4.44	9.31	7.42	6.44	16.36	12.23	10.96	14.72	12.39	5.02	10.05	5.33
Merged-chr15-77836305-2	chr15	77836205	77836405	+	803.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	5870.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	10.09	9.31	7.99	6.44	5.73	5.64	2.66	3.48	13.96	11.05	13.57	3.76
Merged-chr1-36079847-2	chr1	36079758	36079958	+	803.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	11458.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.25	2.01	5.13	6.84	11.05	4.7	8.97	15.0	11.01	4.02	6.53	6.89
Merged-chr10-13835869-2	chr10	13835746	13835946	+	803.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	33111.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	10.5	9.06	5.7	10.46	12.68	24.15	10.96	13.57	2.75	5.02	1.0	1.88
Merged-chr1-171412221-3	chr1	171412142	171412342	+	803.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009480, intron 1 of 9)	intron (NM_009480, intron 1 of 9)	561.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	6.46	8.8	5.7	10.46	11.45	8.15	11.63	8.13	8.46	3.51	11.05	5.01
Merged-chr14-76760636-3	chr14	76760541	76760741	+	803.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153763, intron 1 of 1)	intron (NR_153763, intron 1 of 1)	510.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	8.88	12.58	30.23	14.48	9.0	8.15	6.64	5.69	56.84	36.15	71.35	36.34
Merged-chr3-79229561-3	chr3	79229453	79229653	+	803.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	16634.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	2.83	3.52	12.55	10.86	8.18	9.09	9.3	11.75	16.72	9.04	34.17	16.6
Merged-chr12-79627552-3	chr12	79627459	79627659	+	803.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297174.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	10.9	7.8	11.98	14.48	13.91	16.31	5.98	14.44	13.77	11.55	18.59	12.22
Merged-chr5-8055878-3	chr5	8055810	8056010	+	803.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-632.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	10.5	8.8	13.69	12.07	12.68	4.7	4.98	17.41	7.67	9.04	9.55	3.13
Merged-chr7-121059784-2	chr7	121059680	121059880	+	803.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	14750.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.23	9.56	3.42	15.28	7.77	9.09	7.31	11.86	6.1	3.01	15.07	2.51
Merged-chr14-120285321-2	chr14	120285213	120285413	+	803.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	9644.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.27	4.53	10.27	4.42	13.91	13.48	5.31	10.51	17.51	10.54	10.05	8.77
Merged-chr10-41980935-3	chr10	41980841	41981041	+	803.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 5 of 17)	MIRc|SINE|MIR	37441.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	9.29	8.3	7.42	6.84	14.73	16.93	4.32	12.93	15.74	19.08	15.07	7.83
Merged-chr13-85285375-1	chr13	85285275	85285475	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 1 of 24)	PB1|SINE|Alu	4111.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	7.27	2.26	7.99	6.84	8.18	1.88	7.31	8.3	4.13	12.05	7.54	7.21
Merged-chr12-31059772-1	chr12	31059672	31059872	+	803.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14196.0	NM_027828	104943.0	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	1.62	0.5	2.28	0.0	0.82	0.31	0.66	1.09	27.93	16.07	13.06	13.78
Merged-chr11-77445069-3	chr11	77444995	77445195	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-18818.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	2.02	2.77	2.85	4.02	8.59	4.7	4.32	18.73	3.74	9.04	8.54	5.64
Merged-chr1-46970627-1	chr1	46970527	46970727	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44851.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.23	4.28	11.41	8.04	11.45	11.6	10.3	6.62	3.15	3.51	8.04	4.39
Merged-chr17-17589134-3	chr17	17589024	17589224	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	35365.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.86	18.11	13.69	6.03	12.68	5.96	4.65	8.47	9.83	11.05	16.08	2.51
Merged-chr8-111653693-3	chr8	111653610	111653810	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10267.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	12.11	14.34	14.83	0.0	16.36	16.93	4.32	6.34	11.8	9.04	20.6	4.07
Merged-chr3-14871601-1	chr3	14871501	14871701	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007606, exon 7 of 7)	exon (NM_007606, exon 7 of 7)	8063.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	5.25	3.52	6.85	6.03	6.95	5.96	15.28	13.21	2.36	6.03	1.0	3.13
Merged-chr4-136141144-1	chr4	136141044	136141244	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2678.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.44	5.53	4.56	13.67	7.36	6.59	8.3	10.29	2.75	8.03	10.55	7.83
Merged-chr9-52174800-3	chr9	52174691	52174891	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6680.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	23.82	32.7	17.68	4.42	13.09	40.14	13.29	6.03	21.64	12.55	9.04	1.88
Merged-chr2-157407789-3	chr2	157407669	157407869	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16524.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.46	19.12	12.55	3.62	12.27	40.45	4.65	6.53	12.78	8.54	16.58	2.19
Merged-chr6-124769540-3	chr6	124769374	124769574	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302555)	TTS (NM_001302555)	199.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	11.31	3.27	5.13	2.82	13.5	13.48	5.65	5.83	10.23	4.52	7.03	5.01
Merged-chr2-117444945-3	chr2	117444833	117445033	+	803.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102056.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	10.9	9.56	9.7	4.83	9.0	11.6	3.32	11.69	19.08	8.54	16.08	9.4
Merged-chr5-135012279-3	chr5	135012250	135012450	+	803.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190437)	TTS (NM_001190437)	807.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	3.23	5.53	11.41	4.83	5.73	7.53	5.31	9.42	12.59	13.56	6.53	6.89
Merged-chrX-85292957-3	chrX	85292841	85293041	+	803.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43264.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	3.23	9.06	17.68	13.27	22.91	23.2	24.58	36.76	7.67	11.05	18.59	6.89
Merged-chr2-71368464-2	chr2	71368368	71368568	+	803.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-914.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	2.83	2.01	7.99	2.01	11.86	13.17	10.96	10.93	16.13	8.03	10.05	6.58
Merged-chr19-29252340-4	chr19	29252229	29252429	+	803.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048177, intron 1 of 23)	intron (NM_001048177, intron 1 of 23)	526.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	8.08	5.28	3.99	4.83	6.14	4.08	6.31	5.41	5.31	12.55	11.56	9.08
Merged-chr2-122572035-3	chr2	122571927	122572127	+	803.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39250.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	16.56	19.37	10.27	10.05	18.0	41.08	10.3	9.98	11.01	7.53	8.04	7.52
Merged-chr2-128367988-3	chr2	128367867	128368067	+	803.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	L3b|LINE|CR1	61384.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	10.9	11.07	11.98	5.63	11.45	14.42	4.98	3.11	23.8	15.06	9.04	8.46
Merged-chr10-61492292-3	chr10	61492200	61492400	+	803.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153542, intron 2 of 4)	intron (NM_153542, intron 2 of 4)	16467.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	10.5	6.54	9.13	7.64	17.59	12.86	6.98	10.51	19.28	24.6	17.59	7.83
Merged-chr14-20697166-3	chr14	20697062	20697262	+	803.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028428, intron 2 of 2)	intron (NM_028428, intron 2 of 2)	2194.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	13.73	8.3	10.84	5.63	14.73	14.11	7.31	18.42	13.96	10.04	13.57	9.4
Merged-chrX-42150020-2	chrX	42149935	42150135	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021465)	promoter-TSS (NM_021465)	-119.0	NM_001290713	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	2.02	10.31	6.85	8.04	13.91	7.84	5.31	7.74	12.19	17.07	11.56	8.77
Merged-chr13-31228085-1	chr13	31227985	31228185	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045957, intron 1 of 2)	intron (NR_045957, intron 1 of 2)	13001.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	2.42	4.02	1.71	7.24	4.91	5.64	5.98	10.01	2.16	0.0	0.0	0.0
Merged-chr16-21701999-2	chr16	21701898	21702098	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-7333.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.44	11.07	9.13	4.02	14.32	19.44	17.27	15.22	11.6	5.02	7.03	5.64
Merged-chr2-103673843-2	chr2	103673753	103673953	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	87417.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	12.11	7.04	19.97	8.45	7.77	3.14	5.98	7.29	7.28	6.03	8.54	10.65
Merged-chr8-11071283-1	chr8	11071183	11071383	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62853.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	2.02	1.01	6.85	6.03	5.73	5.02	9.3	16.32	2.56	8.03	7.54	8.14
Merged-chr17-45735593-2	chr17	45735535	45735735	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	1129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	8.08	5.28	7.42	1.61	5.73	5.33	2.99	7.29	5.31	14.06	13.06	2.82
Merged-chr5-26537910-2	chr5	26537823	26538023	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44609.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	3.63	9.06	6.28	7.24	15.96	12.86	24.25	15.67	9.83	6.03	8.04	3.76
Merged-chr10-87960203-3	chr10	87960069	87960269	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6502.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	8.08	6.29	22.25	23.73	10.23	5.64	25.24	24.87	11.21	5.52	10.55	5.01
Merged-chr5-143511720-2	chr5	143511618	143511818	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	16275.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	12.92	9.81	10.27	6.44	20.05	8.47	8.97	14.07	10.03	5.52	3.01	3.13
Merged-chr2-62635487-1	chr2	62635387	62635587	+	803.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027835, intron 2 of 15)	intron (NM_027835, intron 2 of 15)	10768.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.04	8.55	2.28	4.83	3.68	4.39	1.33	8.78	13.57	5.52	14.07	9.08
Merged-chr15-78778576-2	chr15	78778410	78778610	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130859, intron 17 of 20)	(TCTCCC)n|Simple_repeat|Simple_repeat	-5065.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	1.62	4.02	2.28	0.0	1.23	4.39	2.99	0.67	6.1	3.51	4.52	2.51
Merged-chr1-151339010-2	chr1	151338899	151339099	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5487.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	8.08	4.78	1.14	6.03	4.5	3.76	9.3	13.37	10.23	3.01	4.02	8.14
Merged-chr9-92485065-1	chr9	92484965	92485165	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178711, intron 6 of 8)	intron (NM_178711, intron 6 of 8)	27687.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	2.42	2.01	3.42	4.83	10.23	5.33	3.32	12.79	3.34	4.02	4.02	1.57
Merged-chr4-137879800-2	chr4	137879658	137879858	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	17521.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.42	4.02	7.99	5.63	0.0	0.31	0.66	1.68	20.06	27.11	21.1	20.05
Merged-chr6-26205725-3	chr6	26205627	26205827	+	803.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	274301.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	8.48	9.06	11.41	6.03	12.68	9.72	18.6	28.04	19.67	10.54	23.62	16.92
Merged-chr13-5873894-3	chr13	5873793	5873993	+	803.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12404.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	12.52	7.8	2.28	3.22	8.59	15.99	7.31	3.9	17.7	24.1	11.05	3.13
Merged-chr2-17936687-2	chr2	17936584	17936784	+	803.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60274.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	12.52	9.81	15.97	32.18	6.55	9.72	4.32	16.65	11.01	5.52	3.52	5.01
Merged-chr12-24630397-2	chr12	24630295	24630495	+	803.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20976.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	6.46	4.02	17.11	5.23	9.82	7.53	9.63	10.37	15.34	16.07	17.08	2.82
Merged-chr1-23259852-3	chr1	23259751	23259951	+	803.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12418.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	8.88	4.78	10.27	12.07	9.0	12.54	13.95	15.5	12.0	9.54	18.59	3.76
Merged-chr14-65414485-3	chr14	65414374	65414574	+	803.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010932, intron 1 of 3)	Lx4A|LINE|L1	10998.0	NM_001205075	18155.0	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	10.5	22.64	18.25	1.21	6.95	14.11	5.65	1.09	14.16	16.07	7.54	10.65
Merged-chr15-91179429-3	chr15	91179332	91179532	+	803.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	12575.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	7.67	12.07	9.13	10.05	14.32	10.35	5.65	10.74	13.18	10.54	6.53	7.83
Merged-chr9-74905053-3	chr9	74904945	74905145	+	803.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43124.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	4.44	9.31	10.27	11.26	6.95	10.35	9.97	12.48	15.34	20.59	21.61	11.59
Merged-chr1-183599412-3	chr1	183599316	183599516	+	803.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149561.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	13.73	7.29	11.41	15.28	8.59	3.14	2.66	10.54	10.82	12.05	14.07	5.33
Merged-chr12-85746477-2	chr12	85746381	85746581	+	803.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-58.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	22.61	6.29	5.13	4.42	13.91	9.41	9.3	6.84	13.18	15.06	11.56	4.7
Merged-chr13-119342071-2	chr13	119341983	119342183	+	803.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308506, intron 14 of 16)	B3A|SINE|B2	66928.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	12.92	5.28	2.28	6.03	4.09	7.84	7.97	5.55	10.62	9.54	19.09	1.25
Merged-chr8-107066297-2	chr8	107066197	107066397	+	803.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025458)	promoter-TSS (NM_025458)	-653.0	NM_025458	66269.0	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	8.08	8.3	8.56	7.24	24.14	11.92	15.61	16.77	1.38	2.01	2.01	1.57
Merged-chr13-93901523-2	chr13	93901430	93901630	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110753.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	7.67	8.05	11.41	5.23	14.73	14.42	14.28	22.63	4.72	6.03	3.01	6.27
Merged-chr1-165707497-1	chr1	165707397	165707597	+	803.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	597.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.67	4.78	5.13	11.26	4.09	9.72	6.98	5.41	8.06	8.03	5.53	6.89
Merged-chr8-33668414-1	chr8	33668314	33668514	+	803.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	15176.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.0	0.0	1.14	0.0	0.82	0.0	0.0	0.06	12.39	9.04	14.57	9.08
Merged-chr2-125775144-3	chr2	125775024	125775224	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177608, intron 2 of 17)	intron (NM_177608, intron 2 of 17)	7746.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	9.29	6.79	24.53	12.47	9.41	5.02	9.3	13.35	5.31	7.03	11.05	10.02
Merged-chr11-11557321-1	chr11	11557221	11557421	+	803.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68055.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	4.85	0.0	3.99	6.44	10.64	10.35	0.33	6.81	8.26	5.02	8.04	5.33
Merged-chr8-121116110-3	chr8	121116025	121116225	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-46.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	6.86	7.04	15.97	9.65	12.68	16.31	11.96	8.69	11.8	9.04	19.6	7.21
Merged-chr9-88546374-3	chr9	88546280	88546480	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1640.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	4.04	10.31	9.13	7.24	21.68	20.38	11.63	18.2	31.47	9.54	23.11	8.46
Merged-chr5-73293757-1	chr5	73293657	73293857	+	803.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023429, intron 1 of 8)	intron (NM_023429, intron 1 of 8)	963.0	NM_001159888	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	2.42	6.04	1.71	2.41	2.86	5.96	2.66	3.93	14.55	12.55	13.57	4.39
Merged-chr11-50345647-3	chr11	50345542	50345742	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12237.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	14.13	6.79	11.41	10.86	5.73	8.15	7.97	10.23	12.0	17.07	17.08	7.52
Merged-chr2-152757224-3	chr2	152757150	152757350	+	803.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053091, intron 3 of 4)	intron (NM_053091, intron 3 of 4)	3077.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	10.5	8.05	10.84	12.47	9.41	15.05	6.98	19.88	12.98	14.56	12.06	15.04
Merged-chr3-13583874-2	chr3	13583771	13583971	+	803.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	68994.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	5.65	7.04	4.56	15.69	7.36	12.86	13.62	8.61	10.62	15.57	16.58	9.08
Merged-chr9-65525852-2	chr9	65525768	65525968	+	803.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54219.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.4	1.76	2.28	0.0	2.86	14.42	4.65	1.04	7.67	15.06	5.02	4.07
Merged-chr1-53743195-2	chr1	53743101	53743301	+	803.275024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36417.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	15.34	6.29	25.67	19.71	2.86	1.25	0.66	0.79	9.64	11.55	14.07	6.27
Merged-chr2-121509785-3	chr2	121509697	121509897	+	803.272217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290987, intron 1 of 11)	intron (NM_001290987, intron 1 of 11)	3074.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	11.31	11.07	12.55	12.87	20.05	15.37	10.63	18.36	10.82	13.56	13.06	7.21
Merged-chr11-3180802-2	chr11	3180712	3180912	+	803.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	PB1D10|SINE|Alu	12651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	9.29	15.59	3.42	12.87	15.96	4.7	15.94	13.26	1.77	0.5	1.0	1.88
Merged-chr18-60813014-2	chr18	60812884	60813084	+	803.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198984)	TTS (NM_001198984)	908.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	6.46	14.84	2.28	9.65	1.64	6.59	1.99	0.08	13.18	21.59	6.53	4.39
Merged-chr12-111458800-2	chr12	111458692	111458892	+	803.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16131.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	13.33	5.79	3.42	3.22	9.41	5.96	2.33	8.5	9.44	6.03	12.06	9.71
Merged-chr11-113648346-3	chr11	113648224	113648424	+	803.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1205.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	7.67	5.53	7.99	6.84	12.68	12.23	6.64	10.01	13.77	12.55	8.54	7.21
Merged-chr7-44952165-3	chr7	44952048	44952248	+	803.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077591, intron 5 of 10)	intron (NM_001077591, intron 5 of 10)	8908.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	9.29	9.81	5.13	14.48	15.96	12.86	5.98	6.95	13.57	12.05	21.61	12.22
Merged-chr14-105732726-6	chr14	105732657	105732857	+	803.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108987.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	8.08	10.06	10.27	6.84	3.68	9.72	4.65	3.95	7.28	12.05	9.04	4.39
Merged-chr7-101092840-3	chr7	101092706	101092906	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15969.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	22.21	7.8	15.97	18.9	6.55	8.15	6.31	14.52	11.41	7.03	11.56	10.96
Merged-chr11-31734283-3	chr11	31734158	31734358	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62396.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.25	5.53	11.98	13.67	18.41	11.6	23.58	38.94	14.95	17.07	11.05	16.6
Merged-chr4-56059094-3	chr4	56059033	56059233	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-526658.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.46	6.54	16.54	15.69	8.18	2.51	8.64	4.49	18.1	4.02	23.62	10.34
Merged-chr9-95614151-3	chr9	95614022	95614222	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23506.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	6.46	6.04	24.53	11.26	16.36	10.03	10.3	13.96	7.87	9.04	9.55	10.02
Merged-chr8-125199427-3	chr8	125199318	125199518	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	145223.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	7.27	9.06	7.42	7.24	22.5	33.55	12.62	14.52	15.54	8.54	15.07	3.76
Merged-chr6-83616671-3	chr6	83616579	83616779	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	39437.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.27	7.8	15.97	7.24	20.46	12.86	8.64	13.79	21.64	13.05	18.59	9.4
Merged-chr11-78916599-3	chr11	78916487	78916687	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4200.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	8.88	10.82	15.4	13.67	13.5	17.87	7.64	12.7	12.19	10.04	8.54	7.52
Merged-chr9-100395882-3	chr9	100395795	100395995	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90578.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.46	7.8	4.56	5.23	8.18	9.41	5.98	10.88	18.1	3.51	17.59	5.64
Merged-chr1-106815033-2	chr1	106814937	106815137	+	803.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18312.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	7.27	7.04	1.71	3.62	10.64	16.93	9.63	14.83	10.42	10.04	10.05	5.33
Merged-chr18-80706740-3	chr18	80706630	80706830	+	803.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	1443.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.86	5.28	5.7	14.88	10.23	6.27	10.3	10.79	9.05	13.05	13.57	5.64
Merged-chr13-21782714-3	chr13	21782599	21782799	+	803.111084	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178207)	TTS (NM_178207)	698.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	3.63	3.27	0.0	2.41	8.18	0.63	3.32	3.59	11.01	9.04	2.01	6.89
Merged-chr10-30620065-3	chr10	30619968	30620168	+	803.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1702.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	13.33	8.8	6.85	14.08	5.73	13.48	5.98	12.0	14.75	11.55	15.58	15.98
Merged-chr13-23760279-3	chr13	23760197	23760397	+	803.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178192)	TTS (NM_178192)	952.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	12.11	10.06	3.42	6.44	9.0	12.86	6.31	6.87	24.19	21.09	31.66	7.52
Merged-chr5-122548827-3	chr5	122548725	122548925	+	803.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46600.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	11.31	11.57	5.7	23.33	15.96	9.09	14.62	21.34	4.72	3.01	11.56	10.02
Merged-chr4-135129011-3	chr4	135128922	135129122	+	803.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	8377.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	21.4	9.56	20.54	11.66	15.14	21.32	5.31	10.77	10.62	7.03	9.55	6.58
Merged-chr3-59130554-3	chr3	59130466	59130666	+	803.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001287124, exon 1 of 2)	5' UTR (NM_001287124, exon 1 of 2)	196.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	11.31	10.82	6.85	10.86	9.82	9.72	9.97	13.88	7.47	9.04	12.56	6.27
Merged-chr1-55406746-3	chr1	55406589	55406789	+	803.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	743.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.83	7.04	14.83	11.66	5.32	10.98	13.29	7.77	9.05	12.05	12.06	5.64
Merged-chr15-78979130-1	chr15	78979030	78979230	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039156, intron 12 of 24)	intron (NM_001039156, intron 12 of 24)	-3926.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	5.65	8.3	11.41	2.41	3.27	0.94	0.0	1.43	2.36	5.52	6.53	0.94
Merged-chr17-43554713-1	chr17	43554613	43554813	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11074.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	3.63	2.26	3.42	2.41	2.45	2.2	5.98	7.77	3.15	0.5	2.51	2.51
Merged-chr6-54327861-3	chr6	54327755	54327955	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030024, intron 1 of 1)	CpG	843.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	14.13	7.8	7.42	2.82	12.27	15.68	1.99	7.26	14.55	4.02	15.07	11.9
Merged-chr12-85974192-3	chr12	85974100	85974300	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	MLT1F|LTR|ERVL-MaLR	104841.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	8.88	6.54	6.85	5.23	9.0	5.64	9.3	6.48	9.83	5.02	19.09	8.46
Merged-chr18-54722129-2	chr18	54722023	54722223	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110379.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	5.25	2.01	2.85	3.22	51.96	41.08	28.9	35.55	3.93	9.04	13.06	3.45
Merged-chr5-105648907-1	chr5	105648807	105649007	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51062.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.62	3.77	1.14	11.66	9.0	7.84	5.98	8.66	5.11	3.51	9.55	3.45
Merged-chr7-128305110-2	chr7	128305007	128305207	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6976.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	11.71	6.04	2.85	6.84	2.05	10.35	12.29	2.61	13.37	4.52	15.58	2.82
Merged-chr5-27792533-1	chr5	27792433	27792633	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-983.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	1.62	1.01	3.42	1.61	1.64	10.03	2.99	7.01	5.11	0.5	1.51	1.57
Merged-chr5-135478518-1	chr5	135478418	135478618	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	66604.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	12.11	10.56	12.55	15.28	7.36	5.96	8.97	14.94	8.65	7.53	12.06	10.96
Merged-chr3-65956627-1	chr3	65956527	65956727	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	1622.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.63	2.77	6.85	8.45	3.68	8.78	3.32	5.52	4.92	6.03	11.56	5.64
Merged-chr16-23226219-1	chr16	23226119	23226319	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152126)	promoter-TSS (NR_152126)	198.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.67	5.03	9.7	8.45	11.05	7.21	2.33	7.26	5.31	0.0	5.53	11.9
Merged-chr18-56727444-1	chr18	56727344	56727544	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	19631.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.44	8.05	3.42	14.08	3.68	5.64	4.32	7.57	5.31	3.01	4.52	3.76
Merged-chr4-43042629-1	chr4	43042529	43042729	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-2328.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	9.69	11.07	5.7	5.23	6.14	6.59	0.66	3.2	2.56	0.5	4.02	9.71
Merged-chr14-47358142-1	chr14	47358042	47358242	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15718.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.83	6.79	6.28	5.63	7.36	5.02	15.28	21.14	3.15	0.0	0.5	0.94
Merged-chr9-108936187-1	chr9	108936087	108936287	+	803.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	-461.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	4.44	8.55	4.56	1.21	9.41	19.13	1.33	4.79	11.21	13.05	4.52	5.64
Merged-chr10-78312088-1	chr10	78311988	78312188	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	28119.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	2.83	5.03	1.71	2.82	3.68	5.02	4.65	7.35	5.31	0.5	3.52	1.25
Merged-chr13-105218786-1	chr13	105218686	105218886	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	74228.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.46	3.77	7.42	5.63	8.18	3.76	0.66	8.27	2.95	6.03	4.52	2.82
Merged-chr15-85001554-3	chr15	85001450	85001650	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13579.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	1.62	9.06	4.56	6.44	10.64	10.03	7.64	11.02	19.47	19.58	18.09	10.65
Merged-chr1-9797227-3	chr1	9797122	9797322	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-908.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	8.88	6.29	19.97	13.27	7.36	5.02	8.3	10.74	11.01	3.51	7.03	7.21
Merged-chr2-59613070-3	chr2	59612959	59613159	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	1017.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	6.86	11.82	6.85	12.47	5.32	15.05	4.32	7.49	12.0	7.53	14.57	6.89
Merged-chr19-10847328-1	chr19	10847228	10847428	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	RLTR17B_Mm|LTR|ERVK	4784.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	3.63	7.55	3.42	1.21	4.91	8.15	1.33	2.64	6.69	3.51	0.5	4.39
Merged-chr1-184771780-1	chr1	184771680	184771880	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39287.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	4.85	6.29	1.14	11.26	3.68	8.78	8.3	10.88	7.87	7.03	5.53	7.21
Merged-chr4-35018647-1	chr4	35018547	35018747	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-107166.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	7.67	2.01	3.42	8.85	9.82	7.21	4.65	9.11	0.98	1.51	8.04	5.33
Merged-chr10-59590044-3	chr10	59589951	59590151	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033259, intron 1 of 7)	MLT1N2|LTR|ERVL-MaLR	26641.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	4.44	10.06	11.98	10.86	16.36	15.37	11.63	11.13	10.42	14.56	12.56	11.28
Merged-chr3-41409026-1	chr3	41408926	41409126	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.42	2.52	2.28	9.65	27.41	11.92	15.28	19.15	11.01	13.05	7.54	5.01
Merged-chr8-120495002-1	chr8	120494902	120495102	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	6136.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	1.62	5.79	10.27	8.85	4.5	5.33	2.66	8.16	7.87	3.01	7.54	2.19
Merged-chr9-61373753-2	chr9	61373727	61373927	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 1 of 19)	CpG	1461.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.85	3.77	6.28	1.21	2.86	4.39	4.98	3.28	9.44	2.01	7.54	5.95
Merged-chr2-129295312-1	chr2	129295212	129295412	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181589, intron 2 of 8)	ID4_|SINE|ID	1900.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	9.29	12.83	0.0	0.0	1.64	8.78	1.33	1.12	3.34	6.53	1.0	0.63
Merged-chr5-45498334-1	chr5	45498234	45498434	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4960.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.85	2.77	9.13	5.63	6.95	7.84	6.64	8.1	5.11	3.51	8.54	5.33
Merged-chr5-24389511-3	chr5	24389427	24389627	+	802.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2616.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	8.88	8.8	9.7	4.02	11.86	22.26	10.3	9.64	18.29	20.59	22.61	9.71
Merged-chr2-30626165-3	chr2	30626033	30626233	+	802.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31089.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.85	10.06	5.7	3.62	14.32	15.99	3.32	5.27	9.44	15.06	5.02	5.64
Merged-chr5-16309785-3	chr5	16309697	16309897	+	802.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110843, intron 12 of 38)	intron (NM_001110843, intron 12 of 38)	-243698.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	10.5	8.55	10.27	7.24	9.0	6.27	8.64	13.01	16.72	18.08	20.6	8.46
Merged-chr6-67074070-2	chr6	67073950	67074150	+	802.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-36643.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	12.52	10.82	13.12	10.86	9.0	6.59	10.96	11.19	9.44	7.53	6.53	5.95
Merged-chr16-24435524-3	chr16	24435411	24435611	+	802.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-12580.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	9.69	11.07	9.7	6.44	13.09	18.19	8.97	19.6	10.23	12.05	32.16	10.34
Merged-chr9-113727199-3	chr9	113727088	113727288	+	802.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14285.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.65	3.02	17.68	17.29	10.64	6.9	7.64	13.35	17.9	12.55	9.04	2.51
Merged-chr7-16782681-3	chr7	16782535	16782735	+	802.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	1289.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	12.52	3.27	11.98	4.83	12.27	7.53	6.31	10.57	10.82	8.54	10.05	7.52
Merged-chr7-122127955-2	chr7	122127829	122128029	+	802.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001289842, exon 4 of 12)	exon (NM_001289842, exon 4 of 12)	5017.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	11.31	9.06	10.27	7.24	7.77	3.14	1.33	13.18	12.78	10.04	21.61	3.45
Merged-chrX-169879590-2	chrX	169879492	169879692	+	802.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290506)	promoter-TSS (NM_001290506)	-27.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	4.04	3.27	0.0	1.61	4.5	10.98	8.64	11.3	4.92	6.53	15.07	8.77
Merged-chr14-75722218-2	chr14	75722107	75722307	+	802.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177381, intron 15 of 22)	intron (NM_177381, intron 15 of 22)	32286.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	4.04	4.78	10.27	2.82	10.64	7.21	2.66	6.25	14.75	15.06	15.58	5.64
Merged-chr11-86658038-2	chr11	86657940	86658140	+	802.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	B3|SINE|B2	13235.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	8.48	5.28	6.28	4.83	3.68	10.66	10.3	9.53	7.67	13.56	11.56	5.95
Merged-chr2-13785470-3	chr2	13785359	13785559	+	802.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	8061.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	9.69	13.83	2.85	17.7	13.91	13.17	7.97	9.59	23.41	8.03	13.06	2.82
Merged-chr2-102707525-1	chr2	102707425	102707625	+	802.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	1087.0	NM_001077515	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	2.42	1.76	1.14	2.41	9.82	11.6	5.65	6.73	0.59	2.01	3.52	5.01
Merged-chr8-126757128-1	chr8	126757028	126757228	+	802.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91892.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.86	3.52	7.99	7.24	9.41	11.29	6.31	12.67	8.46	4.02	4.52	2.82
Merged-chr10-4611535-1	chr10	4611435	4611635	+	802.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	-454.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	3.23	7.29	8.56	6.03	11.05	2.82	11.29	4.96	9.24	2.51	6.03	5.33
Merged-chr5-102052347-3	chr5	102052256	102052456	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	17565.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	22.61	5.28	12.55	22.12	31.91	18.5	30.89	29.47	11.41	9.54	13.06	9.4
Merged-chr4-149306992-4	chr4	149306932	149307132	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	666.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	12.11	6.29	9.13	5.63	8.59	5.02	8.97	5.92	10.23	16.57	5.02	4.39
Merged-chr15-72810823-3	chr15	72810735	72810935	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002864)	promoter-TSS (NR_002864)	-511.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	6.86	8.05	9.7	6.84	9.41	13.17	9.97	7.99	9.44	20.59	13.06	14.1
Merged-chr12-99315125-2	chr12	99315011	99315211	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	134963.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.85	6.04	12.55	17.7	4.91	5.96	7.64	14.52	3.74	2.01	5.53	1.25
Merged-chr13-51736626-3	chr13	51736508	51736708	+	802.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	57139.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	5.65	6.04	11.98	15.28	16.36	4.39	20.26	16.29	9.24	9.54	20.1	18.8
Merged-chr8-108704636-5	chr8	108704544	108704744	+	802.693359	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10000.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.63	4.78	9.13	9.65	7.36	10.66	10.96	4.85	11.01	7.03	10.05	9.4
Merged-chr7-96296139-1	chr7	96296039	96296239	+	802.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310760, intron 1 of 32)	MIR|SINE|MIR	-9528.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	5.25	2.01	1.71	6.03	2.86	8.47	5.31	13.18	0.98	2.01	1.51	1.88
Merged-chr9-47715580-1	chr9	47715480	47715680	+	802.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	102628.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	3.52	1.14	1.61	8.18	1.57	7.97	11.36	4.72	1.51	4.52	2.19
Merged-chr14-70850416-1	chr14	70850316	70850516	+	802.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2517.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	5.25	1.26	7.99	6.84	10.23	9.41	7.31	9.25	3.34	2.01	1.0	2.51
Merged-chr4-127169163-2	chr4	127169068	127169268	+	802.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-36.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	17.36	6.79	21.68	8.45	5.73	15.05	6.98	8.3	6.29	9.54	7.03	6.58
Merged-chr9-113783878-2	chr9	113783791	113783991	+	802.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	intron (NM_001114347, intron 6 of 39)	-9439.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	11.71	8.55	3.42	7.64	11.05	10.03	5.65	8.69	11.41	8.03	17.59	10.65
Merged-chr10-21995772-8	chr10	21995721	21995921	+	802.65625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001161850, exon 4 of 12)	exon (NM_001161850, exon 4 of 12)	1155.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.04	1.51	7.42	3.62	7.77	7.53	9.97	9.93	7.08	5.02	11.05	5.33
Merged-chr18-33431500-2	chr18	33431401	33431601	+	802.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	32133.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	10.9	4.28	10.84	15.69	4.91	11.6	17.94	10.88	2.56	0.5	4.52	0.63
Merged-chr15-58585673-3	chr15	58585564	58585764	+	802.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	170196.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	12.92	11.32	15.97	8.04	18.0	11.29	5.31	10.18	7.47	11.55	13.57	9.4
Merged-chr4-43563286-3	chr4	43563180	43563380	+	802.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011602)	promoter-TSS (NM_011602)	646.0	NM_013497	12913.0	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	9.69	11.07	13.12	9.65	8.18	7.53	10.63	6.36	15.54	8.54	10.05	8.77
Merged-chr10-66848392-1	chr10	66848292	66848492	+	802.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	71992.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	5.25	3.02	3.42	2.41	9.0	5.33	7.64	5.86	4.13	2.01	3.52	4.07
Merged-chr1-135283527-3	chr1	135283455	135283655	+	802.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	CpG	529.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	6.86	11.82	11.41	4.42	8.18	15.68	15.28	9.53	19.47	18.58	13.57	15.66
Merged-chr16-33875978-3	chr16	33875872	33876072	+	802.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010580, exon 4 of 15)	exon (NM_010580, exon 4 of 15)	46307.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	13.33	5.79	4.56	20.91	10.23	8.15	4.32	10.63	7.87	8.03	10.55	9.4
Merged-chr18-9732188-3	chr18	9732089	9732289	+	802.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24541.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.27	6.79	22.82	11.26	15.14	16.62	11.96	22.01	16.72	12.05	9.04	3.45
Merged-chr18-42792216-3	chr18	42792135	42792335	+	802.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	107271.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	2.42	9.56	13.69	13.67	19.23	16.93	13.62	30.03	10.03	11.55	27.13	9.4
Merged-chr12-34725325-3	chr12	34725267	34725467	+	802.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	L2|LINE|L2	191728.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	19.79	11.07	13.12	9.65	22.5	11.29	14.95	18.2	12.0	5.02	18.09	6.27
Merged-chr4-139259076-1	chr4	139258976	139259176	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 3 of 9)	intron (NM_001037761, intron 3 of 9)	51632.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.46	2.77	0.57	3.62	3.27	7.53	7.97	13.07	3.93	2.51	4.02	7.52
Merged-chr6-129418118-2	chr6	129418034	129418234	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205363, intron 4 of 6)	intron (NM_001205363, intron 4 of 6)	9272.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	1.21	2.77	1.14	0.8	9.82	11.92	2.66	6.34	16.33	17.57	7.03	11.28
Merged-chr12-85380518-3	chr12	85380397	85380597	+	802.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-5780.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	21.0	6.04	11.41	9.25	13.09	18.5	10.63	15.08	10.62	10.04	12.56	16.6
Merged-chr1-171463357-3	chr1	171463243	171463443	+	802.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172647, exon 10 of 10)	3' UTR (NM_172647, exon 10 of 10)	25782.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	13.33	7.55	24.53	26.95	6.55	9.41	2.66	4.68	6.1	6.03	16.58	10.02
Merged-chr19-19111321-1	chr19	19111221	19111421	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001043354)	promoter-TSS (NM_001043354)	-125.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.81	3.27	5.13	8.04	7.77	7.21	9.63	11.5	7.67	10.54	11.56	5.01
Merged-chr7-3948388-1	chr7	3948288	3948488	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32887.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	2.83	4.02	7.99	10.05	10.23	7.53	5.65	11.58	3.74	6.53	9.55	4.07
Merged-chr15-96599096-1	chr15	96598996	96599196	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	42866.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.23	3.52	3.42	1.61	5.73	15.99	7.31	9.0	6.29	4.02	9.04	8.46
Merged-chr5-150900895-1	chr5	150900795	150900995	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-51712.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	2.52	4.56	10.86	6.14	0.0	13.62	15.56	9.24	5.02	8.04	4.7
Merged-chr9-111058697-2	chr9	111058561	111058761	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1143.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	14.94	8.3	1.71	3.62	9.0	6.59	1.66	12.2	8.46	5.52	4.02	7.83
Merged-chr5-75981115-2	chr5	75980996	75981196	+	802.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2668.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	8.08	5.28	9.7	10.05	14.73	12.23	18.93	14.19	2.16	1.0	4.02	0.94
Merged-chr1-183671441-3	chr1	183671338	183671538	+	802.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77539.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	7.67	3.02	14.26	11.26	15.14	10.03	6.64	14.52	17.9	14.06	21.1	15.98
Merged-chr2-150668077-4	chr2	150667925	150668125	+	802.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080575, exon 1 of 14)	exon (NM_080575, exon 1 of 14)	215.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	8.88	5.79	9.7	11.66	4.91	4.39	9.3	8.02	11.6	9.04	13.57	10.34
Merged-chr2-73459408-2	chr2	73459327	73459527	+	802.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5538.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.27	4.53	11.41	8.45	14.73	2.51	12.29	10.74	7.87	8.03	13.57	4.39
Merged-chr5-74790470-1	chr5	74790370	74790570	+	802.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87567.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.62	0.5	3.42	2.41	9.82	10.35	11.63	8.94	0.0	0.5	1.0	0.0
Merged-chr16-11067076-3	chr16	11066960	11067160	+	802.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009223, intron 1 of 1)	CpG	762.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	10.9	5.28	14.83	9.25	22.09	10.98	8.97	15.93	10.23	12.05	18.09	11.9
Merged-chr7-127993723-4	chr7	127993540	127993740	+	802.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023258, exon 1 of 3)	exon (NM_023258, exon 1 of 3)	227.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	8.88	15.34	7.99	11.66	9.0	16.31	2.66	5.69	11.41	11.55	12.06	11.59
Merged-chr19-43920694-2	chr19	43920599	43920799	+	802.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	19499.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	10.09	6.29	2.28	9.25	4.5	5.02	6.98	11.41	2.75	4.02	6.53	5.33
Merged-chr8-18935168-2	chr8	18935096	18935296	+	802.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15675.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	9.29	8.3	6.85	8.04	2.45	7.84	9.97	9.53	5.31	3.51	9.55	4.7
Merged-chr8-60973640-3	chr8	60973554	60973754	+	802.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	MTC|LTR|ERVL-MaLR	9657.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	11.31	9.06	9.13	2.41	8.18	9.09	3.99	14.3	15.14	3.51	13.57	8.77
Merged-chr19-53312696-3	chr19	53312575	53312775	+	802.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	1230.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	8.48	10.82	5.13	11.66	16.77	11.92	13.62	9.11	13.96	23.6	16.08	13.78
Merged-chr14-104460428-1	chr14	104460328	104460528	+	802.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7571.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	12.92	5.28	2.28	7.64	2.45	15.68	7.31	7.68	12.98	4.02	7.03	0.63
Merged-chr19-40659186-1	chr19	40659086	40659286	+	802.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-584.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.46	3.27	5.7	4.42	4.91	6.59	11.29	6.56	6.29	5.02	5.02	5.33
Merged-chr3-104165568-1	chr3	104165468	104165668	+	802.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133853, intron 1 of 21)	L2c|LINE|L2	54838.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	6.46	4.02	3.99	10.46	3.27	8.15	6.31	14.94	0.59	4.52	4.52	1.25
Merged-chr18-68898074-2	chr18	68897969	68898169	+	802.275024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	ORR1E|LTR|ERVL-MaLR	53459.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	23.02	10.06	8.56	23.73	20.46	10.03	7.97	26.5	0.0	0.0	0.0	0.31
Merged-chr2-112259730-2	chr2	112259612	112259812	+	802.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172521)	promoter-TSS (NM_172521)	-421.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	4.85	6.54	8.56	5.23	13.91	6.9	5.31	13.35	12.98	15.57	11.05	2.51
Merged-chr11-59142001-2	chr11	59141900	59142100	+	802.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5625.0	NM_199152	380698.0	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	2.02	2.01	0.0	1.61	2.05	4.39	5.65	5.41	28.13	22.59	29.65	18.48
Merged-chr7-141440806-3	chr7	141440717	141440917	+	802.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360523, exon 8 of 16)	exon (NM_001360523, exon 8 of 16)	-2943.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	10.09	17.36	16.54	8.85	17.59	8.47	9.63	11.19	13.57	7.03	12.56	14.41
Merged-chr4-134552226-3	chr4	134552126	134552326	+	802.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029100)	promoter-TSS (NM_029100)	-60.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	14.13	7.55	9.13	10.46	17.18	16.31	8.64	13.77	8.46	14.56	19.6	7.21
Merged-chr2-32132811-3	chr2	32132707	32132907	+	802.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-18341.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	10.09	5.79	12.55	4.02	14.32	12.86	8.3	8.83	27.34	14.56	14.57	4.7
Merged-chr2-26360128-3	chr2	26360050	26360250	+	802.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-603.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	6.06	10.31	12.55	4.02	13.5	19.44	7.97	14.86	15.14	11.55	17.08	12.22
Merged-chr2-124708192-4	chr2	124708211	124708411	+	802.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54730.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.85	5.28	3.99	6.84	5.73	8.47	7.64	6.81	3.93	7.03	9.04	4.07
Merged-chr13-111943648-1	chr13	111943548	111943748	+	802.166687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	75712.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	11.31	10.31	15.97	11.66	4.91	2.51	1.66	1.85	3.54	0.0	1.51	1.25
Merged-chr15-100133710-2	chr15	100133627	100133827	+	802.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159361, intron 3 of 37)	G-rich|Low_complexity|Low_complexity	-20669.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.86	9.56	9.7	12.47	11.86	7.21	4.98	7.57	6.1	3.01	8.04	9.4
Merged-chr11-54972584-3	chr11	54972469	54972669	+	802.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9629.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	11.31	14.34	6.28	8.04	4.91	20.38	4.98	4.96	22.82	25.11	16.58	9.71
Merged-chr17-66128876-2	chr17	66128760	66128960	+	802.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003919, intron 2 of 26)	intron (NM_001003919, intron 2 of 26)	5340.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	5.65	5.28	3.99	6.44	11.05	11.92	4.98	6.84	14.16	18.58	13.57	3.45
Merged-chr16-4894756-2	chr16	4894658	4894858	+	802.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8658.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	12.11	6.54	9.13	9.25	12.68	13.8	15.61	13.74	12.59	8.03	14.57	5.01
Merged-chr4-141535453-2	chr4	141535347	141535547	+	802.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	intron (NM_001347235, intron 1 of 14)	3150.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.67	6.04	1.71	4.02	5.73	16.62	8.97	8.83	15.34	6.53	12.06	5.01
Merged-chr18-12938385-3	chr18	12938287	12938487	+	802.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	3454.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	11.31	10.06	13.69	16.09	11.05	12.86	8.97	15.95	12.19	8.03	11.05	6.27
Merged-chr10-87722509-3	chr10	87722406	87722606	+	802.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135759.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.65	5.53	15.4	11.26	11.45	2.51	13.29	12.56	15.74	2.51	11.56	8.46
Merged-chr1-125474336-3	chr1	125474227	125474427	+	802.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-38600.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	9.29	6.04	3.99	2.01	20.46	14.42	17.27	18.64	23.8	22.59	29.65	8.14
Merged-chr19-44408597-5	chr19	44408493	44408693	+	802.090454	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-884.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	2.42	8.3	3.42	9.25	1.23	5.02	5.31	5.21	5.11	6.03	1.51	1.57
Merged-chr15-78863252-2	chr15	78863168	78863368	+	802.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7739.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	8.88	7.8	6.85	4.02	9.0	7.84	6.64	8.47	4.92	7.53	0.5	13.47
Merged-chr18-39370869-2	chr18	39370765	39370965	+	802.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 21 of 21)	Charlie4z|DNA|hAT-Charlie	116380.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.86	7.8	15.4	8.04	15.14	15.37	9.97	12.17	11.01	12.05	16.08	3.13
Merged-chr10-78600115-3	chr10	78600014	78600214	+	802.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8150.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	6.46	8.05	10.27	4.02	0.0	10.66	3.99	9.98	17.11	10.04	14.57	9.08
Merged-chr5-66279810-2	chr5	66279711	66279911	+	802.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302833, intron 7 of 12)	L1MEg|LINE|L1	18970.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	6.86	4.53	7.99	6.03	13.91	4.39	6.64	11.13	13.77	15.06	14.07	15.98
Merged-chr6-117580905-3	chr6	117580822	117581022	+	802.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	85687.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	6.86	3.52	18.25	10.05	9.0	8.78	7.64	8.92	20.46	12.05	18.09	11.9
Merged-chr18-35874581-3	chr18	35874480	35874680	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19893.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	9.69	12.58	15.97	7.24	18.82	11.6	10.96	14.86	9.44	7.03	23.62	6.89
Merged-chr13-102860903-1	chr13	102860803	102861003	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	L2a|LINE|L2	100648.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	2.83	2.52	3.99	2.41	6.55	2.82	8.64	7.26	7.28	3.01	4.02	4.07
Merged-chr1-165626574-1	chr1	165626474	165626674	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	7967.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	1.51	10.84	3.22	2.45	1.25	5.65	8.58	5.9	3.51	2.01	1.57
Merged-chr2-132285927-1	chr2	132285827	132286027	+	802.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291039)	promoter-TSS (NM_001291039)	-12.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.63	0.5	4.56	2.41	5.73	3.14	3.99	1.99	13.37	6.03	14.07	2.82
Merged-chr14-17915285-1	chr14	17915185	17915385	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-66359.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.83	1.01	7.99	2.82	2.05	3.14	4.65	8.13	2.56	1.0	1.0	2.82
Merged-chr16-17234736-1	chr16	17234636	17234836	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	1149.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	2.42	7.55	10.27	2.82	8.59	3.14	2.66	6.03	9.83	11.05	5.02	6.27
Merged-chr14-43817980-2	chr14	43817876	43818076	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007894)	TTS (NM_007894)	1663.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	14.13	6.29	14.26	10.86	5.73	6.59	10.96	4.12	11.21	5.02	12.56	8.46
Merged-chr11-35842136-3	chr11	35841985	35842185	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170779, intron 20 of 22)	intron (NM_170779, intron 20 of 22)	-7557.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	4.85	5.03	4.56	10.05	7.36	6.9	18.93	14.13	7.08	8.54	7.54	6.89
Merged-chrX-18957500-2	chrX	18957392	18957592	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	188896.0	NR_029806	723827.0		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	2.42	8.3	10.27	17.7	3.27	9.09	5.65	11.36	7.08	6.53	7.03	5.33
Merged-chr4-101254219-3	chr4	101254115	101254315	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	11067.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	12.92	10.82	15.97	19.71	6.95	11.6	6.64	16.21	9.44	5.52	10.05	10.02
Merged-chr16-70104154-1	chr16	70104054	70104254	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-209795.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.85	0.0	3.42	3.62	5.73	2.2	2.66	14.55	3.34	5.52	6.53	4.07
Merged-chr15-12306761-2	chr15	12306652	12306852	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14744.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	8.48	5.53	10.27	5.63	17.59	14.42	23.58	37.82	7.87	8.03	24.12	9.08
Merged-chr2-165318980-1	chr2	165318880	165319080	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1846.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.25	11.32	11.41	4.42	5.73	7.21	8.97	9.64	8.26	5.52	11.56	3.13
Merged-chr9-35113953-3	chr9	35113863	35114063	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2765.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	9.29	7.04	10.84	4.83	15.55	8.47	7.97	12.45	20.65	23.1	16.58	17.54
Merged-chr14-67813731-2	chr14	67813635	67813835	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 20 of 51)	intron (NM_177780, intron 20 of 51)	46010.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	2.83	7.04	20.54	15.28	4.91	0.63	7.97	5.47	11.21	1.51	8.04	3.13
Merged-chr12-115617574-1	chr12	115617474	115617674	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78220.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.0	2.26	0.0	4.83	5.32	3.45	8.64	2.72	0.98	0.5	3.52	0.0
Merged-chr18-77742754-1	chr18	77742654	77742854	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9284.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	2.42	3.52	0.0	4.83	6.14	2.2	6.98	7.35	4.92	5.02	6.03	3.45
Merged-chr11-100395962-2	chr11	100395860	100396060	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1830.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	9.29	7.29	0.57	2.41	12.27	16.31	2.33	4.46	7.47	2.51	3.52	4.39
Merged-chr7-67461610-1	chr7	67461510	67461710	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88752.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.25	5.79	11.41	3.22	12.68	6.59	3.32	9.93	5.51	2.51	5.02	4.7
Merged-chr9-84544887-2	chr9	84544787	84544987	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-229511.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.04	3.27	2.85	4.42	4.91	3.45	1.33	4.09	27.54	17.07	36.18	15.35
Merged-chr5-137025291-2	chr5	137025205	137025405	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4990.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	14.13	8.05	6.85	1.61	3.68	7.84	1.33	2.72	15.93	11.05	9.04	4.07
Merged-chr11-51889842-2	chr11	51889740	51889940	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-32210.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	9.69	4.02	4.56	5.23	4.09	1.88	4.32	9.93	4.13	6.03	9.55	3.76
Merged-chr16-98107272-1	chr16	98107172	98107372	+	802.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24833.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	2.83	6.04	1.14	2.82	6.55	13.8	3.32	6.34	14.36	12.55	12.06	10.02
Merged-chr2-35162371-1	chr2	35162271	35162471	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 30 of 43)	intron (NM_012018, intron 30 of 43)	30137.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.46	5.79	2.85	1.61	3.27	7.21	4.98	5.3	3.93	2.51	6.53	1.88
Merged-chr6-50874087-2	chr6	50873983	50874183	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97968.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	5.65	1.51	1.14	7.24	6.95	3.76	2.99	6.62	16.52	8.03	9.55	8.14
Merged-chr10-43701144-1	chr10	43701044	43701244	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	-45014.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	8.08	4.02	10.84	4.42	9.41	2.2	0.66	6.14	3.34	6.53	3.52	6.58
Merged-chr14-60432241-1	chr14	60432141	60432341	+	802.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	53955.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.81	0.25	1.71	0.0	3.27	2.51	0.33	1.46	2.36	4.52	9.55	6.27
Merged-chr18-46921763-1	chr18	46921663	46921863	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033446)	promoter-TSS (NM_001033446)	-52.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.0	0.0	0.0	0.8	6.55	7.53	5.65	5.36	0.39	2.01	1.0	0.0
Merged-chr13-24442506-3	chr13	24442407	24442607	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	27385.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	10.5	9.56	9.7	11.26	12.27	15.99	10.96	28.32	11.21	8.54	20.1	5.01
Merged-chr15-55552261-2	chr15	55552159	55552359	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	5053.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	10.5	13.33	14.83	8.85	10.64	4.08	4.98	4.79	13.57	5.52	12.56	3.76
Merged-chr17-87246041-3	chr17	87245937	87246137	+	801.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19910.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	16.15	7.55	31.38	17.7	9.82	6.59	13.62	25.23	8.65	1.51	10.05	9.08
Merged-chr17-70748185-3	chr17	70748084	70748284	+	801.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	98593.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	16.96	6.04	10.27	12.47	3.27	14.11	11.29	8.94	8.65	11.55	9.04	12.22
Merged-chr3-133585068-3	chr3	133584968	133585168	+	801.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-40678.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.86	6.79	2.28	8.45	7.77	13.48	14.62	13.23	9.83	19.58	19.09	10.02
Merged-chr10-7076353-2	chr10	7076246	7076446	+	801.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53161.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	8.88	6.04	12.55	3.22	8.59	17.56	14.95	13.82	14.55	11.05	24.12	7.83
Merged-chr15-35296021-2	chr15	35295939	35296139	+	801.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054049)	promoter-TSS (NM_054049)	-73.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	5.25	6.04	4.56	7.24	10.23	14.74	15.61	13.6	8.65	0.0	7.54	7.52
Merged-chr12-4595295-2	chr12	4595201	4595401	+	801.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	2293.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	4.44	6.04	10.27	5.63	10.64	5.96	5.31	13.93	7.87	10.04	13.06	2.51
Merged-chr8-68456820-3	chr8	68456678	68456878	+	801.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172753, intron 4 of 9)	RMER16_Mm|LTR|ERVK	88319.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	10.5	6.54	14.26	17.7	12.68	15.68	24.25	5.24	13.77	6.53	9.55	4.7
Merged-chr9-121839465-3	chr9	121839403	121839603	+	801.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-42.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	6.46	8.8	6.28	10.46	8.18	13.8	4.32	7.04	21.44	14.06	24.62	17.23
Merged-chr15-64071999-2	chr15	64071920	64072120	+	801.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11572.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.88	7.29	0.57	4.83	13.09	7.53	10.96	9.06	7.47	4.02	6.53	4.7
Merged-chr10-118080280-1	chr10	118080180	118080380	+	801.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-61507.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.06	5.28	1.14	2.01	9.41	6.59	8.64	5.52	2.36	1.0	2.51	2.19
Merged-chr11-46275498-3	chr11	46275406	46275606	+	801.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 8 of 30)	intron (NM_001252459, intron 8 of 30)	36852.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	12.52	2.77	3.42	8.45	10.23	9.72	6.98	7.63	17.51	6.53	21.1	11.59
Merged-chr14-61529730-3	chr14	61529626	61529826	+	801.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	27160.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	12.52	12.83	7.99	6.03	8.18	15.37	6.64	6.93	9.05	4.02	10.05	3.76
Merged-chr5-121999776-3	chr5	121999685	121999885	+	801.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	48040.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	18.57	7.04	17.68	10.86	2.45	9.09	13.62	16.51	11.01	7.03	11.05	4.7
Merged-chr7-84779702-2	chr7	84779596	84779796	+	801.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73875.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	10.5	10.31	11.98	9.65	13.09	15.05	8.64	15.59	7.67	4.52	4.52	5.33
Merged-chr9-66877576-3	chr9	66877473	66877673	+	801.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42132.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.46	10.06	9.13	12.47	6.55	16.62	13.29	30.42	13.18	14.06	6.03	12.22
Merged-chr15-54952617-3	chr15	54952506	54952706	+	801.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155354)	promoter-TSS (NR_155354)	-342.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	6.86	10.31	5.13	10.05	9.0	11.6	12.62	9.81	9.64	9.54	10.05	6.58
Merged-chr2-18997614-2	chr2	18997523	18997723	+	801.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	498.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	9.29	10.06	10.27	9.65	12.27	8.15	15.28	11.21	13.77	9.04	9.04	6.89
Merged-chr18-68031062-1	chr18	68030962	68031162	+	801.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	MTD|LTR|ERVL-MaLR	97889.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.25	4.53	3.42	12.07	9.82	8.78	10.3	10.26	2.75	8.54	3.52	9.4
Merged-chr9-70833821-1	chr9	70833721	70833921	+	801.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	100987.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.86	10.82	5.7	2.41	6.14	9.09	9.97	6.81	4.72	9.54	4.02	4.07
Merged-chr5-66094048-2	chr5	66093924	66094124	+	801.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	ORR1B1|LTR|ERVL-MaLR	4155.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.25	4.53	2.28	2.82	2.86	14.74	4.98	5.58	7.08	12.05	14.57	5.64
Merged-chr15-86362891-2	chr15	86362796	86362996	+	801.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	85221.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	15.34	11.57	2.85	8.45	3.27	8.78	2.99	7.51	2.36	7.03	1.51	4.7
Merged-chr17-5843558-5	chr17	5843494	5843694	+	801.73999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	2214.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	12.11	4.78	7.99	7.64	6.55	16.93	8.97	11.33	9.24	8.03	7.54	4.39
Merged-chr16-93683698-2	chr16	93683643	93683843	+	801.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173047, intron 1 of 2)	CpG	524.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	7.67	11.82	6.85	7.24	10.23	13.8	4.32	5.97	9.24	11.55	5.02	4.7
Merged-chr4-143119087-3	chr4	143118999	143119199	+	801.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081355, intron 8 of 9)	intron (NM_001081355, intron 8 of 9)	17063.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	18.17	7.55	15.97	16.09	11.45	14.74	5.31	6.95	12.0	4.02	23.11	2.82
Merged-chr2-91517536-1	chr2	91517436	91517636	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9226.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	1.62	2.26	3.99	0.0	2.45	4.08	6.64	2.92	2.36	5.52	3.01	2.82
Merged-chr3-101293948-1	chr3	101293848	101294048	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6009.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	6.86	1.76	7.99	3.22	10.64	6.59	19.6	14.83	3.74	2.51	4.52	3.45
Merged-chr5-64813624-3	chr5	64813527	64813727	+	801.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	10104.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	14.94	20.12	19.97	12.87	10.23	12.86	15.28	6.59	14.75	16.57	5.02	5.33
Merged-chr5-99423179-3	chr5	99423076	99423276	+	801.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-170249.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.44	10.06	1.14	12.87	11.86	6.9	3.99	5.64	13.37	9.04	21.61	0.63
Merged-chr12-73685433-1	chr12	73685333	73685533	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100637.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.44	3.27	3.42	1.61	10.23	20.07	8.64	1.99	8.85	15.57	7.03	6.27
Merged-chr2-19631406-1	chr2	19631306	19631506	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	26491.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	4.44	7.04	1.71	6.03	5.32	4.39	3.99	9.53	8.65	10.54	3.01	7.52
Merged-chr1-43501496-1	chr1	43501396	43501596	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	55745.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.86	2.52	4.56	7.64	8.59	4.39	10.96	8.36	10.62	7.03	9.55	4.39
Merged-chr1-178350985-3	chr1	178350895	178351095	+	801.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13180.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	6.86	5.28	4.56	12.07	5.73	7.53	3.99	15.11	16.33	7.03	21.1	5.33
Merged-chr18-38253093-2	chr18	38252996	38253196	+	801.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024179, intron 4 of 12)	intron (NM_024179, intron 4 of 12)	-2531.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	9.69	4.78	5.7	6.84	8.18	11.29	18.93	17.66	7.08	2.01	12.06	7.21
Merged-chr3-27302889-2	chr3	27302792	27302992	+	801.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14185.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	1.62	1.51	0.0	1.61	11.45	19.44	5.98	7.68	10.42	17.57	12.56	5.95
Merged-chr2-152295431-2	chr2	152295328	152295528	+	801.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	1556.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	5.25	5.79	15.4	2.41	13.09	8.15	5.98	10.91	13.37	18.58	6.03	11.28
Merged-chr17-55736867-2	chr17	55736759	55736959	+	801.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13125.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	8.08	4.02	6.28	12.87	7.77	15.68	13.95	17.19	6.69	12.55	12.56	10.96
Merged-chr3-133548889-4	chr3	133548817	133549017	+	801.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4527.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	1.62	2.52	1.14	5.63	6.95	3.45	5.98	1.65	7.08	6.03	12.56	4.7
Merged-chr12-69871774-3	chr12	69871690	69871890	+	801.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201519, intron 2 of 30)	intron (NM_201519, intron 2 of 30)	-21315.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	9.69	7.55	3.99	8.04	13.91	14.42	9.3	19.21	6.88	3.51	21.1	7.52
Merged-chr14-50862683-3	chr14	50862630	50862830	+	801.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 6 of 54)	intron (NM_009351, intron 6 of 54)	7824.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	3.23	7.55	11.41	14.88	6.55	9.09	11.96	11.66	11.01	9.54	10.05	10.02
Merged-chr4-33244189-3	chr4	33244086	33244286	+	801.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	4601.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	7.27	8.8	8.56	11.26	6.95	15.05	7.64	7.63	13.18	11.05	7.03	4.39
Merged-chr19-57356244-2	chr19	57356075	57356275	+	801.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	4724.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	1.62	3.77	0.0	0.4	4.09	4.39	5.98	0.48	1.77	4.02	8.04	3.45
Merged-chr5-136007961-2	chr5	136007868	136008068	+	801.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256096, intron 2 of 10)	ZP3AR|Satellite|Satellite	13168.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	12.11	4.28	9.13	10.05	15.14	4.39	12.29	20.47	3.15	3.01	3.52	0.0
Merged-chr8-72375069-3	chr8	72374979	72375179	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289859, intron 16 of 21)	PB1D10|SINE|Alu	46395.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	10.5	10.06	13.69	11.26	40.5	27.91	23.92	24.31	13.37	11.05	12.06	5.64
Merged-chr15-75695891-3	chr15	75695794	75695994	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8394.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	7.27	8.3	13.12	6.44	6.14	10.98	5.65	9.62	15.74	10.54	23.11	11.28
Merged-chr7-114479969-3	chr7	114479877	114480077	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	64723.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	10.5	4.02	7.99	12.07	28.64	23.52	22.92	44.47	17.9	15.57	11.56	9.71
Merged-chr12-38931949-3	chr12	38931851	38932051	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148240.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	9.69	8.3	10.27	10.86	10.64	14.74	13.29	21.53	11.6	13.05	21.61	10.02
Merged-chr10-67126511-3	chr10	67126447	67126647	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-711.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	8.88	7.04	1.71	10.46	14.32	17.56	21.92	15.48	14.95	9.54	8.04	11.28
Merged-chr1-52748405-3	chr1	52748285	52748485	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21027.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	14.54	7.29	9.13	4.83	10.23	10.98	6.64	9.06	14.75	13.56	15.07	3.13
Merged-chr5-138187921-2	chr5	138187825	138188025	+	801.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009315)	promoter-TSS (NM_009315)	390.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	7.67	9.31	7.99	6.03	8.59	11.29	7.97	9.06	14.75	15.06	15.58	8.77
Merged-chr17-28251743-2	chr17	28251649	28251849	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	18995.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	12.52	9.81	5.7	0.8	8.18	14.74	5.31	9.03	10.42	7.03	6.03	2.51
Merged-chr16-39881761-1	chr16	39881661	39881861	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102603.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	6.46	4.28	4.56	8.04	9.0	6.59	14.95	11.36	2.36	1.0	1.0	0.0
Merged-chr4-136431477-2	chr4	136431376	136431576	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285484, intron 1 of 1)	intron (NM_001285484, intron 1 of 1)	6864.0	NM_001285484	15552.0	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	12.11	7.04	4.56	6.84	13.09	8.15	6.64	11.61	7.67	6.03	1.51	6.27
Merged-chr8-85512460-1	chr8	85512360	85512560	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	19843.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	7.67	2.52	7.99	6.44	9.82	9.72	2.33	6.48	10.42	5.02	11.05	4.39
Merged-chr9-109100839-2	chr9	109100738	109100938	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172775, exon 3 of 38)	exon (NM_172775, exon 3 of 38)	5402.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	18.57	7.55	6.85	5.23	15.96	13.8	13.62	9.53	10.82	7.03	8.04	6.89
Merged-chr17-81501166-1	chr17	81501066	81501266	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	237221.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.85	2.26	7.99	5.63	8.18	10.03	2.99	6.36	11.01	3.01	7.54	6.27
Merged-chr15-58986013-1	chr15	58985913	58986113	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52203.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	1.21	1.51	0.0	2.01	6.95	5.02	5.65	11.33	0.98	0.0	5.02	2.51
Merged-chr2-59425877-2	chr2	59425781	59425981	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39199.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.23	0.75	5.13	2.01	4.5	4.7	7.31	8.1	6.1	6.03	11.05	7.52
Merged-chr13-52610650-2	chr13	52610545	52610745	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	13763.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.63	5.28	3.42	5.23	15.96	12.54	12.95	7.21	10.82	8.54	5.02	0.63
Merged-chr17-83272745-2	chr17	83272650	83272850	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57467.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	8.88	6.04	7.99	0.8	4.91	5.96	3.65	4.6	10.03	5.52	11.56	4.39
Merged-chr5-123675375-2	chr5	123675280	123675480	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	8981.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	5.65	5.28	7.99	3.22	12.27	7.21	5.65	8.1	12.98	26.11	25.12	13.16
Merged-chr9-52175592-2	chr9	52175510	52175710	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7499.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	18.98	11.32	16.54	14.08	6.55	14.42	7.31	6.95	3.74	3.51	9.55	6.89
Merged-chr1-171646613-2	chr1	171646501	171646701	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347184, intron 1 of 5)	intron (NM_001347184, intron 1 of 5)	2398.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	6.86	5.28	1.14	7.24	4.5	2.51	3.99	4.82	29.11	20.08	39.19	31.01
Merged-chr12-37248744-2	chr12	37248645	37248845	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	7106.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	11.31	5.28	6.28	8.04	20.46	22.58	27.24	28.43	0.79	0.0	2.01	0.63
Merged-chr8-70512493-3	chr8	70512399	70512599	+	801.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029366)	TTS (NM_029366)	2013.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	8.88	7.8	12.55	15.28	12.68	14.11	5.31	10.93	18.29	11.55	18.09	10.02
Merged-chr17-65607689-3	chr17	65607563	65607763	+	801.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	5892.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	12.92	3.27	7.42	10.05	12.27	9.72	14.95	11.86	8.26	8.03	9.55	1.25
Merged-chr3-38105699-3	chr3	38105616	38105816	+	801.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102403.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.42	7.29	6.85	9.25	8.59	16.31	15.28	17.27	15.54	15.57	18.59	9.71
Merged-chr1-157047642-3	chr1	157047537	157047737	+	801.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61013.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	10.5	12.32	13.12	2.01	10.23	17.87	5.98	8.86	15.54	8.54	14.57	15.04
Merged-chr16-62826353-3	chr16	62826213	62826413	+	801.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	11637.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	10.5	9.56	5.13	12.07	6.55	6.59	6.98	6.84	14.95	11.05	15.07	5.64
Merged-chr13-103065704-2	chr13	103065559	103065759	+	801.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	268833.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.81	1.26	5.7	5.23	10.64	15.68	11.63	13.18	11.01	6.03	13.06	5.95
Merged-chr9-75195851-2	chr9	75195746	75195946	+	801.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010864, intron 31 of 40)	intron (NM_010864, intron 31 of 40)	-36168.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	1.62	5.79	5.7	4.02	10.64	9.41	12.62	13.99	12.98	20.59	12.56	4.39
Merged-chr4-78256093-1	chr4	78255993	78256193	+	801.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44198.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	1.21	0.5	0.0	2.01	2.05	4.7	9.3	5.1	2.75	3.01	4.02	3.13
Merged-chr3-106482922-1	chr3	106482822	106483022	+	801.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	472.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	6.46	5.03	9.7	7.24	4.09	6.59	7.97	6.53	13.57	8.54	14.07	8.46
Merged-chr2-20967405-1	chr2	20967305	20967505	+	801.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081364, exon 1 of 24)	exon (NM_001081364, exon 1 of 24)	316.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	4.85	7.55	4.56	4.42	5.73	8.15	2.99	8.19	6.49	7.03	4.02	1.57
Merged-chr2-18772592-3	chr2	18772485	18772685	+	801.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11723.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	27.46	18.11	21.11	15.69	7.77	16.93	5.65	15.31	8.26	13.56	12.56	15.35
Merged-chr9-120064756-1	chr9	120064656	120064856	+	801.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	3540.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	4.04	4.28	9.13	5.23	2.05	9.72	6.98	6.03	1.97	3.01	4.02	2.82
Merged-chr17-70818062-3	chr17	70817959	70818159	+	801.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347414, exon 11 of 11)	exon (NM_001347414, exon 11 of 11)	28718.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.83	11.82	25.67	22.52	6.14	16.62	13.29	6.87	9.24	6.53	14.57	9.4
Merged-chr13-35478357-2	chr13	35478252	35478452	+	801.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-181510.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.25	8.8	18.25	12.87	6.14	7.84	5.31	9.0	8.26	3.01	7.54	6.58
Merged-chr17-25131264-3	chr17	25131137	25131337	+	801.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2154.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	8.48	14.09	14.83	6.03	8.59	11.6	6.31	6.28	31.47	16.57	7.03	13.78
Merged-chr17-15830324-3	chr17	15830234	15830434	+	801.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3748.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	6.86	10.31	4.56	7.24	11.05	6.59	10.63	10.35	10.03	5.52	15.58	6.58
Merged-chr7-130671487-1	chr7	130671387	130671587	+	801.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-21069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	4.04	3.77	4.56	8.04	6.95	13.48	14.28	8.97	5.11	4.02	6.03	9.4
Merged-chr8-125870958-2	chr8	125870864	125871064	+	801.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	-26950.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	13.73	5.79	2.28	3.22	8.18	17.87	7.64	9.9	10.03	5.02	9.04	8.77
Merged-chr3-97265167-3	chr3	97265070	97265270	+	801.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-37806.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	6.46	8.8	12.55	7.24	4.91	7.84	4.98	7.74	19.08	5.52	16.58	5.64
Merged-chr12-76950498-3	chr12	76950404	76950604	+	801.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	11744.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	2.42	8.8	7.99	9.65	14.73	12.23	10.3	15.17	24.0	27.11	17.08	11.59
Merged-chr15-100631658-3	chr15	100631553	100631753	+	801.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3906.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	11.31	11.32	13.69	11.66	4.91	6.27	4.65	9.11	10.82	3.01	14.07	2.51
Merged-chr2-159811851-3	chr2	159811741	159811941	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135500.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	16.96	9.81	9.7	12.07	19.23	10.66	6.31	10.4	13.96	10.54	17.59	5.33
Merged-chr2-73047185-3	chr2	73047072	73047272	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66726.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	10.9	5.53	12.55	6.84	10.64	19.13	9.3	16.04	16.72	11.55	15.58	7.21
Merged-chr8-70844724-3	chr8	70844609	70844809	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032397, intron 9 of 9)	intron (NM_032397, intron 9 of 9)	-4989.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	20.59	8.05	9.13	4.02	9.0	12.54	7.31	10.04	17.31	11.55	17.08	16.6
Merged-chrX-94731785-1	chrX	94731685	94731885	+	801.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7216.0	NM_001081473	668166.0	Mm.426145	NM_001081473	ENSMUSG00000073062	Zxdb	Zxda	zinc finger, X-linked, duplicated B	protein-coding	6.46	4.02	7.99	3.62	11.05	7.53	11.29	7.71	19.87	6.53	8.54	6.27
Merged-chr13-20508331-1	chr13	20508231	20508431	+	801.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35341.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.42	2.26	11.41	9.25	11.86	7.21	10.96	9.03	0.98	0.0	0.5	0.63
Merged-chr10-121464085-1	chr10	121463985	121464185	+	801.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	12165.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.62	0.75	0.0	1.21	1.64	0.0	0.66	0.7	14.95	9.54	17.59	13.78
Merged-chrX-134306243-3	chrX	134306180	134306380	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026239)	TTS (NM_026239)	-1804.0	NM_145924	102920.0	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	8.48	5.03	11.41	12.87	10.64	9.09	5.98	7.23	10.62	4.02	5.53	10.34
Merged-chr4-154942845-3	chr4	154942709	154942909	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14732.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	12.11	8.3	9.13	8.85	14.32	20.38	9.3	11.13	16.52	9.04	9.04	5.64
Merged-chr3-158032259-2	chr3	158032204	158032404	+	801.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-532.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	6.86	5.28	1.71	3.22	5.32	3.76	3.65	6.7	11.41	11.05	7.03	10.96
Merged-chr3-97931722-3	chr3	97931604	97931804	+	801.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	1531.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	8.88	7.29	14.26	21.72	5.32	11.92	9.63	15.31	6.69	15.06	10.05	10.65
Merged-chr19-10904995-2	chr19	10904893	10905093	+	801.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134129, intron 15 of 15)	intron (NM_134129, intron 15 of 15)	6348.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	9.29	6.04	15.4	14.08	12.68	7.84	8.97	8.21	10.62	2.01	4.52	4.39
Merged-chr2-158773011-3	chr2	158772917	158773117	+	801.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027975, intron 1 of 3)	intron (NM_027975, intron 1 of 3)	4918.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	10.5	6.54	7.99	10.86	18.82	12.54	10.3	21.48	11.21	19.58	17.59	13.16
Merged-chr18-69537550-3	chr18	69537441	69537641	+	801.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	191381.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.04	7.55	3.42	9.25	13.5	12.23	7.97	11.19	13.57	7.03	21.1	7.21
Merged-chr7-10494191-3	chr7	10494097	10494297	+	801.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009577, intron 2 of 3)	intron (NM_009577, intron 2 of 3)	1184.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	7.27	10.56	3.42	10.86	5.73	14.11	7.64	14.83	16.33	9.54	12.56	2.82
Merged-chr12-52372935-1	chr12	52372835	52373035	+	801.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	107674.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	2.02	8.55	15.97	4.42	4.5	2.51	2.66	5.94	12.98	9.54	5.53	4.39
Merged-chr7-116370559-1	chr7	116370459	116370659	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-36369.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	4.04	2.01	0.0	6.44	4.91	5.02	5.31	10.26	4.72	1.51	9.55	5.33
Merged-chr2-156418565-2	chr2	156418475	156418675	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-2334.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	10.5	5.28	1.71	4.83	6.55	4.7	12.95	15.7	4.33	8.54	13.57	8.14
Merged-chr10-18941648-1	chr10	18941548	18941748	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	70315.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.27	0.75	0.0	6.03	7.36	1.88	11.96	11.52	1.57	2.01	2.51	3.45
Merged-chrX-52453501-2	chrX	52453414	52453614	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016697, intron 2 of 7)	intron (NM_016697, intron 2 of 7)	-30999.0	NR_030497	751531.0		NR_030497	ENSMUSG00000076214	Mir717	Mirn717|mir-717|mmu-mir-717	microRNA 717	ncRNA	2.83	1.76	7.99	6.84	3.68	10.35	3.65	9.42	9.24	8.03	11.05	7.83
Merged-chr11-4803581-1	chr11	4803481	4803681	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010898, intron 7 of 15)	intron (NM_010898, intron 7 of 15)	29554.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	4.44	5.03	2.28	4.83	2.45	0.94	4.65	7.29	5.7	11.05	9.04	6.89
Merged-chr19-41375245-1	chr19	41375145	41375345	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	9825.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.88	2.77	6.85	6.03	8.59	7.21	3.32	6.06	1.77	2.51	9.55	3.45
Merged-chr14-16534313-1	chr14	16534213	16534413	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	41163.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	6.46	15.85	14.83	4.02	0.0	0.63	0.0	0.76	0.0	0.0	0.0	0.0
Merged-chr2-90517297-1	chr2	90517197	90517397	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-38123.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.86	3.27	6.85	8.04	8.59	14.42	7.64	7.82	6.69	7.53	10.55	5.95
Merged-chr14-61649340-1	chr14	61649240	61649440	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	CpG	-17230.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	12.11	1.26	2.28	6.44	11.45	10.35	10.63	7.46	15.34	7.03	6.53	7.52
Merged-chrX-155280610-3	chrX	155280493	155280693	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019736, intron 5 of 14)	intron (NM_019736, intron 5 of 14)	18150.0	NM_019736	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	5.25	6.04	11.98	14.08	18.0	20.7	17.61	32.1	11.8	7.53	14.57	15.98
Merged-chr13-92668762-2	chr13	92668654	92668854	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	57616.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	10.9	7.04	7.42	4.83	18.0	15.99	9.97	14.92	11.41	3.01	10.05	8.46
Merged-chr4-149683009-3	chr4	149682901	149683101	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	MTB_Mm|LTR|ERVL-MaLR	-6912.0	NM_001164051	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.06	11.82	12.55	3.62	9.41	12.23	2.99	4.04	11.6	2.01	10.55	5.64
Merged-chr1-24695907-2	chr1	24695845	24696045	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	17027.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.63	2.77	10.84	5.63	13.5	2.82	8.3	11.13	5.9	1.51	5.02	3.76
Merged-chr4-154915521-2	chr4	154915419	154915619	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	12558.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.23	7.04	1.71	3.22	6.55	6.59	1.99	5.41	30.09	25.61	24.12	25.06
Merged-chr12-52001775-2	chr12	52001674	52001874	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4733.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	7.67	5.79	4.56	12.07	12.27	7.84	2.33	10.54	10.82	10.04	9.55	7.21
Merged-chr1-182961921-3	chr1	182961810	182962010	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	7122.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.65	6.54	19.4	16.09	5.73	7.21	2.33	12.28	10.42	4.02	11.56	8.77
Merged-chr5-149690532-1	chr5	149690432	149690632	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	12275.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	8.88	2.77	1.71	3.62	4.5	3.14	4.32	6.25	1.38	0.5	6.53	0.63
Merged-chr17-10425532-1	chr17	10425432	10425632	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-30684.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	4.04	2.52	0.0	4.02	4.5	5.33	7.31	8.47	4.92	2.01	3.01	3.13
Merged-chr2-94268551-1	chr2	94268451	94268651	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-7152.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	4.44	7.29	5.7	2.01	0.0	10.66	1.99	5.36	5.9	3.51	11.05	5.64
Merged-chr7-4293139-2	chr7	4293060	4293260	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18971.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	2.02	6.54	7.99	4.02	2.86	8.15	11.29	4.43	32.06	20.08	15.58	10.65
Merged-chr18-21718406-1	chr18	21718306	21718506	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-66038.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	3.23	2.77	25.67	5.63	12.68	5.33	5.98	18.67	1.38	0.0	1.51	1.25
Merged-chr2-113399084-1	chr2	113398984	113399184	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-41980.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.67	3.77	5.13	6.44	3.68	10.66	4.32	8.07	6.29	3.51	12.06	7.83
Merged-chr11-20068555-1	chr11	20068455	20068655	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146243, intron 8 of 8)	intron (NM_146243, intron 8 of 8)	44396.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.02	1.01	7.99	1.21	8.18	3.45	3.32	8.16	7.28	1.51	5.53	4.07
Merged-chr19-45056507-3	chr19	45056421	45056621	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001178013)	TTS (NM_001178013)	8945.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	13.73	6.79	5.13	13.67	13.5	10.66	9.3	19.65	10.82	6.53	16.58	12.22
Merged-chr14-36953312-1	chr14	36953212	36953412	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027045, intron 1 of 10)	Lx9|LINE|L1	-12048.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	5.25	3.52	4.56	3.22	8.59	11.6	4.98	10.49	11.8	4.52	5.02	6.58
Merged-chr3-54317439-2	chr3	54317338	54317538	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-43669.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	1.62	0.5	0.0	4.02	12.68	15.05	10.3	18.22	6.49	10.04	11.56	13.16
Merged-chr5-31526889-3	chr5	31526772	31526972	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009206)	promoter-TSS (NM_009206)	-110.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	8.88	5.03	6.28	1.21	7.36	7.84	4.65	5.89	7.87	12.55	6.03	7.21
Merged-chr4-141301213-3	chr4	141301090	141301290	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-31.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	10.09	5.03	6.85	9.65	13.09	19.76	6.31	12.53	17.31	11.05	13.57	13.16
Merged-chr15-73727579-1	chr15	73727479	73727679	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	2649.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.81	4.78	8.56	6.44	2.45	9.09	3.32	7.68	3.15	6.03	7.03	3.13
Merged-chr7-136331597-1	chr7	136331497	136331697	+	801.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040459)	TTS (NR_040459)	17818.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	3.23	0.5	2.28	0.0	1.64	3.14	2.66	6.73	10.42	4.52	20.6	8.14
Merged-chr1-161035986-1	chr1	161035886	161036086	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153814, exon 3 of 10)	non-coding (NR_153814, exon 3 of 10)	1070.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	2.83	2.01	0.0	1.61	6.95	9.41	4.65	8.97	3.93	3.51	5.53	4.7
Merged-chr5-120498690-1	chr5	120498590	120498790	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023625, intron 2 of 11)	ID_B1|SINE|B4	4933.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	7.27	4.53	9.13	1.61	5.32	8.15	2.66	8.97	3.15	11.05	4.02	6.27
Merged-chr4-74305450-2	chr4	74305335	74305535	+	800.924988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 4 of 20)	MTB_Mm|LTR|ERVL-MaLR	53556.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.65	5.03	5.7	16.09	22.09	9.41	8.3	9.42	14.16	16.57	12.06	6.89
Merged-chr11-83665959-2	chr11	83665882	83666082	+	800.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3398.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	13.33	14.34	14.26	8.04	4.09	9.41	3.32	2.92	9.64	13.05	1.51	7.21
Merged-chr12-25415384-3	chr12	25415273	25415473	+	800.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	286199.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.48	9.06	19.4	19.71	26.59	14.74	11.96	24.7	5.9	13.05	12.06	6.27
Merged-chr4-152087936-3	chr4	152087828	152088028	+	800.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104381, intron 2 of 21)	intron (NR_104381, intron 2 of 21)	1065.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	15.75	8.55	12.55	9.25	15.55	13.17	7.31	11.89	13.96	4.02	13.57	5.64
Merged-chr12-3696307-3	chr12	3696189	3696389	+	800.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-110691.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	12.11	10.82	13.69	11.66	8.59	11.92	6.64	12.5	17.9	9.04	17.08	8.14
Merged-chr8-115160088-2	chr8	115159997	115160197	+	800.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	546797.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.27	11.57	4.56	9.25	8.59	7.53	6.31	7.57	7.28	1.51	5.53	6.89
Merged-chr7-128180255-2	chr7	128180136	128180336	+	800.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029872, intron 5 of 30)	intron (NM_001029872, intron 5 of 30)	6290.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	5.25	6.29	4.56	12.87	5.32	7.21	6.98	5.69	4.92	3.01	7.54	7.52
Merged-chr2-157426344-2	chr2	157426241	157426441	+	800.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	2048.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	8.88	11.32	9.7	12.07	11.86	12.86	11.63	9.59	5.11	6.53	10.55	7.21
Merged-chr11-26135421-2	chr11	26135325	26135525	+	800.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-66815.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.02	2.01	7.99	2.41	9.0	10.35	10.63	20.55	13.96	9.04	15.58	6.58
Merged-chr2-112217794-2	chr2	112217672	112217872	+	800.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	-22069.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	5.25	5.28	5.7	6.03	10.23	8.47	18.6	8.86	12.78	13.05	13.06	7.21
Merged-chr11-83969277-2	chr11	83969162	83969362	+	800.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194341, intron 1 of 19)	B3|SINE|B2	4831.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	12.11	11.57	19.4	10.46	7.36	10.66	1.66	9.93	6.49	8.03	8.04	6.27
Merged-chr17-26438083-3	chr17	26437981	26438181	+	800.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	23116.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	9.69	5.28	9.13	6.84	6.95	5.96	2.66	7.82	18.29	29.12	20.6	11.28
Merged-chr1-86416070-2	chr1	86415982	86416182	+	800.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10247.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	10.5	11.07	11.41	4.42	1.64	3.45	4.98	4.43	15.14	2.51	13.06	8.46
Merged-chr9-121605615-3	chr9	121605518	121605718	+	800.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040740, intron 3 of 3)	intron (NR_040740, intron 3 of 3)	18598.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	14.54	7.04	7.99	10.46	8.18	12.23	3.65	6.64	19.28	6.53	17.08	11.9
Merged-chr2-91964998-3	chr2	91964859	91965059	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1396.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	10.09	7.29	7.99	16.89	6.95	9.09	3.32	13.12	12.59	7.03	20.1	10.02
Merged-chr16-10873818-3	chr16	10873705	10873905	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38746.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	8.88	6.29	11.41	10.46	9.82	10.03	9.63	9.79	12.0	11.05	10.55	11.9
Merged-chr2-169934547-3	chr2	169934449	169934649	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	28638.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	9.29	7.29	6.28	9.65	14.32	22.58	14.62	14.94	12.98	10.04	21.61	6.89
Merged-chr15-62165238-3	chr15	62165151	62165351	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	54200.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	16.96	9.06	11.98	6.84	9.0	21.64	14.95	19.68	14.36	9.04	14.57	15.66
Merged-chr18-34380756-3	chr18	34380651	34380851	+	800.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7336.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	27.46	10.31	18.25	8.04	14.32	20.7	15.28	13.68	14.75	8.54	12.06	7.52
Merged-chr6-42352123-3	chr6	42352074	42352274	+	800.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2346.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	10.09	8.05	9.7	23.73	11.45	7.21	6.64	9.84	8.46	8.54	15.58	11.59
Merged-chr5-102032962-2	chr5	102032853	102033053	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36968.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.42	4.28	4.56	10.86	17.59	14.74	19.93	17.83	6.49	7.03	10.55	6.89
Merged-chr11-49082168-1	chr11	49082068	49082268	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-4849.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.63	4.28	3.42	14.88	14.32	6.27	11.29	8.72	11.01	4.02	8.04	3.76
Merged-chr7-35712277-1	chr7	35712177	35712377	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 10 of 18)	intron (NM_178704, intron 10 of 18)	42177.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	3.63	3.52	4.56	4.02	7.36	6.9	9.3	10.68	1.38	0.0	5.02	3.13
Merged-chr4-43741703-1	chr4	43741603	43741803	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10156.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	8.08	2.26	2.28	8.45	6.14	15.05	6.98	10.54	5.7	2.51	11.56	2.82
Merged-chr14-121318486-1	chr14	121318386	121318586	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	60744.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.65	0.75	4.56	13.27	6.55	9.41	4.65	11.66	4.72	3.01	5.02	5.64
Merged-chr8-79210198-2	chr8	79210110	79210310	+	800.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026315)	TTS (NM_026315)	38373.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	8.88	4.02	9.13	11.26	14.32	10.66	14.95	14.97	5.31	3.01	17.08	5.95
Merged-chr4-148644061-1	chr4	148643961	148644161	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085505, intron 1 of 10)	intron (NM_001085505, intron 1 of 10)	744.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.44	7.04	4.56	1.21	11.45	6.59	5.65	3.39	1.18	2.01	4.02	3.45
Merged-chr2-152767769-3	chr2	152767666	152767866	+	800.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289739, intron 2 of 4)	L2b|LINE|L2	13593.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	11.71	15.59	15.4	12.07	9.0	12.23	10.3	11.21	21.44	12.05	9.55	6.89
Merged-chr15-6337696-3	chr15	6337587	6337787	+	800.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37898.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	10.5	8.8	18.83	12.87	24.55	15.99	11.29	34.29	11.6	19.08	7.54	5.95
Merged-chr6-53068243-3	chr6	53068162	53068362	+	800.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	362.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	8.48	10.82	7.99	5.63	14.32	13.17	2.66	10.32	11.6	23.6	16.08	5.64
Merged-chr4-121016054-3	chr4	121015956	121016156	+	800.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	1191.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	18.57	7.8	6.85	3.22	11.86	12.54	2.99	2.64	26.36	16.57	9.04	4.07
Merged-chr14-77928172-3	chr14	77928062	77928262	+	800.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 2 of 11)	intron (NM_029495, intron 2 of 11)	23923.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	19.38	9.06	18.83	7.64	15.55	18.81	6.98	15.95	11.6	15.57	9.04	7.83
Merged-chr12-11215762-1	chr12	11215662	11215862	+	800.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6814.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	3.23	3.02	3.42	2.82	11.45	9.41	8.97	8.97	1.38	0.0	2.51	0.63
Merged-chr5-105706841-1	chr5	105706741	105706941	+	800.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	6031.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.44	4.53	2.85	2.82	4.91	11.92	4.98	5.72	4.33	5.52	3.52	4.07
Merged-chr11-93941085-1	chr11	93940985	93941185	+	800.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134012, intron 15 of 15)	intron (NM_134012, intron 15 of 15)	14698.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	5.65	3.77	9.13	1.21	7.36	12.54	3.32	12.08	8.65	7.03	10.55	10.02
Merged-chr11-22515283-2	chr11	22515183	22515383	+	800.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153596, intron 1 of 3)	intron (NM_153596, intron 1 of 3)	3000.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.85	4.53	3.42	4.02	2.05	3.45	7.64	8.97	16.52	9.04	12.56	7.21
Merged-chr1-88267913-2	chr1	88267820	88268020	+	800.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	1488.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	6.86	4.53	1.71	6.84	12.27	11.92	7.97	14.1	12.19	6.53	14.57	6.27
Merged-chr4-150570487-1	chr4	150570387	150570587	+	800.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	81687.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.04	2.52	8.56	4.42	8.18	10.35	3.65	9.39	8.65	1.51	4.52	1.88
Merged-chr10-117437388-3	chr10	117437305	117437505	+	800.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10030.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	10.5	8.3	7.99	3.62	9.41	42.96	25.24	8.66	22.82	13.56	7.54	5.33
Merged-chr2-3358113-3	chr2	3358019	3358219	+	800.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	8450.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	17.77	12.58	7.99	7.64	8.18	21.01	20.93	12.7	15.14	10.04	13.06	7.52
Merged-chr18-60859302-3	chr18	60859192	60859392	+	800.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10328.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	9.69	9.81	5.13	3.22	6.95	11.6	4.32	8.47	18.49	11.55	12.56	9.71
Merged-chr7-24838899-2	chr7	24838812	24839012	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045096, intron 10 of 11)	intron (NR_045096, intron 10 of 11)	20117.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	5.25	6.79	12.55	5.63	18.41	10.66	22.92	9.28	3.54	15.06	8.54	12.53
Merged-chr15-67996682-1	chr15	67996582	67996782	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	262174.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.81	3.52	2.28	2.01	6.55	3.76	8.97	9.81	0.79	0.5	2.01	2.19
Merged-chr15-85645362-1	chr15	85645262	85645462	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-58411.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	9.69	15.85	14.26	2.82	5.73	9.09	1.99	0.73	7.28	10.04	7.03	3.76
Merged-chr17-36025570-1	chr17	36025470	36025670	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-5010.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	16.96	8.8	8.56	2.41	0.41	4.7	8.3	4.91	1.97	2.51	0.5	3.45
Merged-chr4-16101538-2	chr4	16101441	16101641	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62102.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.65	5.03	10.27	2.82	7.77	4.08	20.93	28.37	6.69	7.53	11.56	8.77
Merged-chr9-119445948-3	chr9	119445844	119446044	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153321, intron 3 of 7)	intron (NR_153321, intron 3 of 7)	984.0	NR_153319	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	10.9	8.55	9.13	7.64	7.36	4.7	10.63	14.66	21.64	11.55	16.08	8.14
Merged-chr9-20727920-2	chr9	20727820	20728020	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	309.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	5.65	3.52	10.27	7.24	8.59	10.35	2.66	6.9	16.92	9.54	12.56	10.96
Merged-chr7-137416224-1	chr7	137416124	137416324	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-5468.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	17.68	0.0	20.86	23.2	7.31	0.0	1.18	0.0	8.54	1.57
Merged-chr11-117955863-1	chr11	117955763	117955963	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13503.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	7.27	4.78	3.42	5.63	11.86	6.27	6.64	5.75	5.9	8.54	6.03	6.58
Merged-chr8-46791302-1	chr8	46791202	46791402	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	51557.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.83	2.77	9.7	4.02	8.18	7.84	3.99	8.05	9.44	4.02	5.53	2.82
Merged-chr7-96153270-1	chr7	96153170	96153370	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17974.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	3.23	6.04	1.71	6.44	6.55	7.53	11.96	10.37	0.79	1.0	1.51	0.94
Merged-chr19-43496093-3	chr19	43495997	43496197	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	28508.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	14.94	9.81	11.98	6.44	10.64	8.47	7.31	10.15	32.06	24.1	16.58	8.46
Merged-chr13-8777869-1	chr13	8777769	8777969	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93175.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.5	0.0	3.22	5.73	5.02	7.64	10.6	3.15	6.53	2.01	1.57
Merged-chr4-95884956-1	chr4	95884856	95885056	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	82079.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	6.06	5.28	10.84	7.64	6.95	5.02	15.28	12.62	4.72	3.01	18.59	7.21
Merged-chr2-73453028-4	chr2	73452935	73453135	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	854.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.67	3.27	11.98	10.05	4.91	3.76	2.33	8.64	9.24	4.52	4.52	8.77
Merged-chr2-112492596-2	chr2	112492497	112492697	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-367.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	7.27	3.27	2.28	4.02	3.68	10.35	4.32	7.23	2.95	12.55	5.53	11.59
Merged-chr18-53160376-3	chr18	53160287	53160487	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15905.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	9.29	9.56	7.99	8.85	7.36	14.74	16.28	9.81	16.92	7.03	14.57	9.08
Merged-chr14-123990082-1	chr14	123989982	123990182	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045479, intron 1 of 3)	intron (NR_045479, intron 1 of 3)	2447.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0.81	1.76	1.14	1.61	11.05	4.08	3.99	8.52	3.74	5.02	2.01	2.82
Merged-chr7-49093735-1	chr7	49093635	49093835	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	68423.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	3.63	3.02	10.27	4.83	7.36	7.84	5.65	13.93	4.33	5.52	10.05	3.76
Merged-chr3-68056651-2	chr3	68056641	68056841	+	800.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177585)	TTS (NM_177585)	-8061.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	1.21	0.0	0.57	2.41	0.0	2.51	1.0	1.4	5.31	0.0	7.03	2.19
Merged-chrX-104280095-3	chrX	104280001	104280201	+	800.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009592)	TTS (NM_009592)	-78984.0	NM_001077354	245555.0	Mm.381907	NM_001077354	ENSMUSG00000046449	Nexmif	A230051P11|C77370|C77386|KIDLIA|Xpn|mKIAA2022	neurite extension and migration factor	protein-coding	12.52	20.63	12.55	14.08	3.68	6.9	14.95	19.88	10.23	9.54	20.1	9.08
Merged-chr2-14295564-3	chr2	14295459	14295659	+	800.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 15 of 29)	intron (NM_008625, intron 15 of 29)	34556.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	12.11	7.8	5.7	12.07	11.05	9.72	12.62	7.12	18.29	16.57	14.57	5.33
Merged-chr6-113302435-3	chr6	113302344	113302544	+	800.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170673, intron 19 of 19)	intron (NM_170673, intron 19 of 19)	-4693.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	14.54	13.08	9.13	10.05	9.82	16.62	2.99	10.91	17.7	9.54	13.06	5.95
Merged-chr9-21152920-2	chr9	21152820	21153020	+	800.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3014.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	8.08	3.52	2.28	1.61	9.82	11.6	6.31	5.86	14.75	12.05	9.04	4.07
Merged-chr4-142166098-3	chr4	142166083	142166283	+	800.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109684, intron 1 of 6)	intron (NM_001109684, intron 1 of 6)	44025.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	3.23	11.32	3.42	4.83	5.73	6.27	6.98	2.21	7.67	9.54	8.04	7.83
Merged-chr3-40529080-3	chr3	40528984	40529184	+	800.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6172.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	16.56	12.07	8.56	11.26	14.32	12.54	4.65	5.89	19.28	16.57	19.09	11.59
Merged-chr16-76539881-2	chr16	76539782	76539982	+	800.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8913.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	6.06	5.03	4.56	11.26	18.0	10.98	17.94	17.13	7.08	6.53	13.57	9.71
Merged-chr5-42967092-2	chr5	42966985	42967185	+	800.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-266378.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	2.02	4.78	6.85	16.09	6.95	7.84	15.28	13.32	9.05	4.52	13.06	4.7
Merged-chr11-115061735-3	chr11	115061640	115061840	+	800.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	299.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	39.17	45.02	44.5	8.85	8.59	18.81	8.3	4.77	25.77	13.05	18.09	6.27
Merged-chr2-167693086-3	chr2	167693024	167693224	+	800.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1947.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	9.69	5.28	19.4	15.28	19.64	8.15	22.26	13.85	7.87	10.54	15.07	15.98
Merged-chr15-31460801-3	chr15	31460711	31460911	+	800.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-7122.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	10.5	1.01	0.0	11.26	16.36	19.13	12.62	22.68	17.31	11.05	21.1	6.89
Merged-chr11-51578603-1	chr11	51578503	51578703	+	800.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-6154.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.44	11.32	2.28	3.22	0.0	7.84	3.65	0.62	12.78	16.57	11.56	4.7
Merged-chrX-142904081-1	chrX	142903981	142904181	+	800.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019496, intron 2 of 5)	L2a|LINE|L2	62647.0	NM_019496	56068.0	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	3.63	2.52	5.7	3.62	4.09	6.9	6.98	14.83	4.52	2.01	9.04	3.13
Merged-chr13-108300565-1	chr13	108300465	108300665	+	800.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15772.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	2.83	2.26	3.42	6.03	8.18	7.21	8.97	7.79	2.56	1.51	12.56	3.13
Merged-chr16-76380375-3	chr16	76380265	76380465	+	800.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6538.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	7.27	3.27	13.12	15.28	11.05	9.41	4.32	6.84	13.37	12.05	13.57	4.7
Merged-chr10-122008891-2	chr10	122008777	122008977	+	800.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38438.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.23	6.29	9.13	5.23	12.68	26.34	11.96	10.99	6.29	12.55	13.06	3.45
Merged-chr2-18688923-3	chr2	18688812	18689012	+	800.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10110.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	11.71	10.56	3.99	6.44	7.77	10.98	4.65	8.64	18.49	17.07	16.08	9.71
Merged-chr11-116016368-4	chr11	116016196	116016396	+	800.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-3577.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	14.13	3.02	2.85	2.41	2.45	11.29	1.99	0.56	4.92	5.02	0.0	4.7
Merged-chrX-36644861-1	chrX	36644761	36644961	+	800.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081956, intron 1 of 6)	intron (NM_001081956, intron 1 of 6)	553.0	NM_001081956	338351.0	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	4.44	6.54	9.13	8.45	6.95	10.03	8.3	9.39	7.08	7.53	6.03	7.52
Merged-chr17-65641883-1	chr17	65641783	65641983	+	800.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146002, intron 1 of 2)	intron (NM_001146002, intron 1 of 2)	321.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.25	2.52	9.13	6.03	6.14	6.9	8.97	7.99	10.62	6.03	7.54	4.7
Merged-chr2-6580279-3	chr2	6580193	6580393	+	800.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	141369.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	9.69	11.32	11.98	24.13	11.05	12.23	7.64	24.03	14.16	10.54	13.06	14.1
Merged-chr16-10495166-3	chr16	10495070	10495270	+	800.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	RLTR35B_MM|LTR|ERVL	5389.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	14.94	8.8	13.12	9.65	6.55	8.47	3.32	6.22	17.31	4.52	16.58	2.82
Merged-chr6-86364607-3	chr6	86364496	86364696	+	800.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1087.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	10.5	19.37	8.56	12.47	15.14	6.9	10.3	11.41	21.64	18.58	16.08	13.78
Merged-chr1-74245115-3	chr1	74244993	74245193	+	800.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	8576.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	21.0	16.85	41.64	27.35	12.68	4.08	4.32	14.75	7.28	14.06	13.06	12.84
Merged-chr16-18235184-3	chr16	18235065	18235265	+	800.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-29.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	8.08	11.07	17.68	10.46	24.55	16.62	13.62	15.76	10.82	11.05	13.57	9.08
Merged-chr8-46804303-2	chr8	46804189	46804389	+	800.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	64544.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.27	5.53	9.13	5.23	16.36	29.16	6.64	7.54	19.87	13.05	9.55	5.64
Merged-chr5-135615472-2	chr5	135615365	135615565	+	800.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-17189.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	5.25	4.28	2.28	5.23	9.82	6.27	7.31	14.5	8.65	3.01	7.54	7.21
Merged-chr9-104035442-3	chr9	104035346	104035546	+	800.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028721, intron 19 of 26)	intron (NM_028721, intron 19 of 26)	27675.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	11.31	3.52	15.97	18.5	7.36	17.87	4.65	11.16	17.11	9.54	19.09	6.58
Merged-chr7-29522414-2	chr7	29522314	29522514	+	800.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16954.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	5.65	4.78	1.71	4.83	8.59	8.47	4.98	9.28	17.31	13.56	18.59	8.77
Merged-chr11-37079644-2	chr11	37079556	37079756	+	800.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.23	2.01	1.14	2.41	10.23	19.44	8.97	15.2	12.59	11.55	3.01	4.07
Merged-chr15-101298164-3	chr15	101298052	101298252	+	800.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033803)	TTS (NR_033803)	4940.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	8.08	10.82	5.13	9.25	10.64	11.92	8.64	12.84	11.21	5.02	14.57	10.02
Merged-chr14-32093899-3	chr14	32093705	32093905	+	800.011902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145460, intron 3 of 7)	MIR|SINE|MIR	8077.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	4.44	7.04	4.56	4.83	6.95	9.09	7.64	4.85	6.1	5.52	4.52	4.7
Merged-chr8-41057424-2	chr8	41057296	41057496	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-2600.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.81	1.26	1.14	4.02	2.45	3.14	3.65	6.79	14.36	18.08	21.61	15.04
Merged-chr2-4548625-1	chr2	4548525	4548725	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-11129.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.06	3.27	16.54	3.22	8.18	10.03	8.3	13.12	8.46	4.02	15.07	8.14
Merged-chr13-42282747-1	chr13	42282647	42282847	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18729.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.44	7.29	1.14	11.66	8.18	8.78	3.32	7.43	2.56	4.52	5.02	5.01
Merged-chr1-106173116-1	chr1	106173016	106173216	+	800.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	1247.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.63	2.52	9.7	7.24	2.86	9.41	11.63	5.66	9.44	9.54	11.56	8.14
Merged-chr16-94618712-2	chr16	94618608	94618808	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	RSINE1|SINE|B4	7289.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.67	6.29	2.85	7.64	8.59	10.03	5.31	6.76	16.52	9.54	28.64	5.95
Merged-chr1-92957186-1	chr1	92957086	92957286	+	800.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6596.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.81	0.5	4.56	4.83	4.5	8.15	3.32	1.93	11.8	10.04	5.02	8.77
Merged-chr3-38206120-3	chr3	38206022	38206222	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040541, intron 2 of 2)	intron (NR_040541, intron 2 of 2)	1997.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	8.08	9.81	5.7	18.5	3.68	5.96	4.65	9.39	14.16	8.03	16.08	7.52
Merged-chr14-118236456-1	chr14	118236356	118236556	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_131970, exon 1 of 2)	non-coding (NR_131970, exon 1 of 2)	224.0	NR_131970	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	3.63	4.02	6.28	3.22	4.5	2.51	4.65	5.13	1.97	1.0	8.54	3.13
Merged-chr6-142994414-1	chr6	142994314	142994514	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29962.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	2.42	0.5	2.28	4.83	2.05	1.25	7.97	5.3	1.57	3.01	1.0	0.63
Merged-chr8-116892819-2	chr8	116892719	116892919	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026844, intron 3 of 3)	MTC|LTR|ERVL-MaLR	28617.0	NM_026844	66531.0	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	4.04	3.02	9.13	3.22	7.77	8.15	2.33	3.98	23.01	19.58	21.1	5.33
Merged-chr6-108526860-2	chr6	108526759	108526959	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	MTD|LTR|ERVL-MaLR	37116.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.65	4.78	9.13	14.48	8.59	14.42	10.96	20.5	15.14	9.04	18.59	4.7
Merged-chr10-117146794-1	chr10	117146694	117146894	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	B4A|SINE|B4	1680.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	2.42	7.55	1.71	1.61	0.82	0.0	5.98	0.53	2.16	6.53	3.01	2.82
Merged-chr1-138134470-1	chr1	138134370	138134570	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	40656.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	1.62	5.53	0.0	8.04	9.41	7.53	4.32	9.14	8.06	11.55	2.01	7.21
Merged-chr8-105566959-1	chr8	105566859	105567059	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-895.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	2.42	3.27	1.14	2.01	3.68	1.57	3.99	5.05	6.29	3.01	5.53	5.64
Merged-chr11-22858632-1	chr11	22858532	22858732	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1103.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	12.92	4.28	10.84	8.45	9.41	10.66	11.29	10.35	6.49	7.03	12.56	1.25
Merged-chr8-83200397-1	chr8	83200297	83200497	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	RMER30|DNA|hAT-Charlie	35045.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	1.62	3.27	13.69	3.62	3.68	5.33	5.98	7.23	4.33	5.52	6.53	2.82
Merged-chr18-65587387-1	chr18	65587287	65587487	+	800.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	4186.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.81	1.01	5.7	4.02	4.5	2.82	1.0	7.15	15.34	6.03	14.07	7.21
Merged-chrX-71265269-1	chrX	71265169	71265369	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	intron (NM_001358113, intron 6 of 15)	50195.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	5.65	5.53	6.28	2.82	7.36	2.82	1.99	13.79	8.85	4.02	3.52	3.13
Merged-chr4-141963353-2	chr4	141963247	141963447	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-19645.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	6.06	10.31	6.85	4.02	3.68	9.41	2.99	5.92	14.95	6.03	10.55	8.46
Merged-chr8-14702402-1	chr8	14702302	14702502	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 5 of 15)	intron (NM_172910, intron 5 of 15)	-186134.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.23	3.02	4.56	4.83	3.27	3.14	6.31	6.06	5.51	1.0	2.01	1.25
Merged-chr15-90132617-1	chr15	90132517	90132717	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-91694.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.0	0.0	0.57	1.61	9.82	6.59	10.3	13.23	3.54	0.0	3.52	1.57
Merged-chr1-189873481-1	chr1	189873381	189873581	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	48810.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.4	1.01	0.0	0.0	4.91	5.64	8.97	9.48	1.18	1.51	0.0	3.76
Merged-chr9-106643357-1	chr9	106643257	106643457	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12752.0	NM_001160353	108068.0	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	5.25	3.52	4.56	5.63	4.09	11.6	7.31	9.56	2.75	1.0	4.02	0.63
Merged-chr17-5783455-1	chr17	5783355	5783555	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15202.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.23	5.03	2.28	4.42	8.18	2.2	1.66	7.74	3.15	3.51	3.01	1.57
Merged-chr4-153827909-2	chr4	153827810	153828010	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	122566.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	7.27	8.3	6.85	6.03	19.23	21.32	15.94	10.63	1.57	5.02	2.51	1.25
Merged-chr10-78228386-1	chr10	78228286	78228486	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081055, intron 3 of 22)	intron (NM_001081055, intron 3 of 22)	16256.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	5.65	4.28	9.7	3.62	5.32	7.84	3.32	8.16	5.7	3.51	4.52	3.76
Merged-chr10-111957913-2	chr10	111957819	111958019	+	799.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14776.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	6.86	5.28	10.84	12.47	13.5	10.66	4.32	8.8	12.59	13.56	19.09	9.71
Merged-chr6-127146068-3	chr6	127145956	127146156	+	799.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009829, exon 3 of 5)	exon (NM_009829, exon 3 of 5)	-3333.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	12.92	21.13	6.28	2.41	11.86	10.35	7.64	8.47	7.47	6.03	13.57	4.39
Merged-chr16-50397480-3	chr16	50397402	50397602	+	799.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	34887.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	13.33	8.8	22.25	12.47	11.86	10.35	1.99	12.53	9.44	6.03	11.56	6.89
Merged-chr7-128359330-3	chr7	128359237	128359437	+	799.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44D|LTR|ERVK	58835.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	17.36	7.8	10.27	5.63	15.55	5.96	8.3	7.93	12.78	5.52	14.57	11.28
Merged-chr2-51073258-2	chr2	51073143	51073343	+	799.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75868.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	12.11	11.57	20.54	22.52	6.55	8.15	4.98	4.93	5.9	8.03	4.52	2.82
Merged-chr7-4789065-2	chr7	4788878	4789078	+	799.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029384, intron 1 of 1)	intron (NM_029384, intron 1 of 1)	582.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	3.63	5.03	2.85	2.82	4.5	3.76	11.96	6.73	5.51	8.03	11.56	6.58
Merged-chr14-27344730-3	chr14	27344636	27344836	+	799.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	8699.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	10.5	7.55	13.12	7.64	17.18	14.11	11.63	10.6	15.14	10.04	18.09	13.47
Merged-chr19-34152109-3	chr19	34152007	34152207	+	799.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024204, intron 1 of 5)	intron (NM_024204, intron 1 of 5)	13934.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	11.71	7.29	13.12	11.66	10.64	9.09	5.98	11.1	14.75	4.52	14.57	13.47
Merged-chr6-92127029-3	chr6	92126901	92127101	+	799.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34568.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	7.67	10.31	16.54	8.45	20.05	13.17	3.32	15.76	10.82	4.52	11.56	8.14
Merged-chr14-99142420-3	chr14	99142338	99142538	+	799.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029320, intron 9 of 17)	intron (NM_029320, intron 9 of 17)	-42668.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	6.06	8.55	7.42	3.62	2.45	9.72	6.31	7.43	12.59	5.52	23.11	9.71
Merged-chr2-128395503-3	chr2	128395365	128395565	+	799.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33886.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	11.71	5.28	6.85	4.42	12.27	15.05	8.3	10.79	13.96	17.07	14.57	8.77
Merged-chr18-77743734-3	chr18	77743644	77743844	+	799.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-10274.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	2.02	8.05	4.56	8.85	12.27	5.96	9.97	7.85	18.1	15.06	32.66	24.43
Merged-chr17-28707431-3	chr17	28707343	28707543	+	799.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	14875.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	20.59	8.8	6.28	17.29	14.32	11.29	20.26	14.36	7.28	10.04	15.07	6.89
Merged-chr19-36919712-3	chr19	36919609	36919809	+	799.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028263)	promoter-TSS (NM_028263)	-110.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	7.27	7.8	1.14	9.25	0.82	7.53	2.99	8.86	17.31	4.02	14.57	5.64
Merged-chr18-79590645-3	chr18	79590546	79590746	+	799.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-456249.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	10.9	8.3	13.12	3.22	6.14	7.53	9.63	10.12	19.67	13.56	23.11	10.96
Merged-chr13-52080022-1	chr13	52079922	52080122	+	799.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16719.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.63	2.77	8.56	1.61	8.18	10.98	10.96	7.65	3.93	3.51	3.52	1.25
Merged-chr7-75655885-3	chr7	75655791	75655991	+	799.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-192447.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	12.92	9.31	12.55	9.25	15.96	16.93	5.65	6.53	7.28	11.05	6.03	12.53
Merged-chr1-135516490-3	chr1	135516447	135516647	+	799.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-61864.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	10.5	8.55	22.82	8.85	8.18	10.35	5.98	7.54	9.44	9.54	3.01	6.58
Merged-chr19-47795555-2	chr19	47795450	47795650	+	799.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027559, intron 11 of 37)	intron (NM_027559, intron 11 of 37)	-40393.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	25.04	15.34	10.27	9.25	10.64	20.38	3.99	7.82	4.33	4.52	7.03	3.13
Merged-chr9-105198885-2	chr9	105198789	105198989	+	799.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-53807.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	12.52	9.56	9.7	9.25	13.09	9.41	7.31	9.53	3.74	2.51	2.51	0.0
Merged-chr9-66124194-3	chr9	66124108	66124308	+	799.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	678.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	10.9	8.8	10.27	5.23	6.55	8.78	6.31	8.33	15.74	8.54	13.57	6.89
Merged-chr12-103325667-3	chr12	103325565	103325765	+	799.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 7 of 9)	CpG	10706.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	9.69	10.06	5.13	12.87	12.68	17.56	4.98	10.18	23.01	12.05	16.58	8.46
Merged-chr17-65870312-3	chr17	65870217	65870417	+	799.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009067, intron 1 of 9)	B3A|SINE|B2	14606.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	9.29	11.07	4.56	8.04	9.0	10.66	1.33	6.76	14.95	13.56	15.07	10.34
Merged-chr6-116010716-2	chr6	116010614	116010814	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15709.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	7.27	12.07	3.99	6.84	11.45	16.31	5.31	9.98	16.72	15.57	15.07	7.21
Merged-chr15-81077757-2	chr15	81077674	81077874	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	B3A|SINE|B2	27273.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.67	3.27	4.56	4.83	6.55	7.21	2.99	5.07	18.29	10.54	16.58	5.95
Merged-chr6-87849895-2	chr6	87849814	87850014	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355195, intron 1 of 4)	intron (NM_001355195, intron 1 of 4)	1192.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	7.67	5.28	13.12	8.04	4.5	4.08	8.3	13.54	10.23	8.54	8.54	6.27
Merged-chr11-83603614-1	chr11	83603514	83603714	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	MLT1G|LTR|ERVL-MaLR	-10527.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.04	1.26	0.0	2.41	7.77	9.41	5.31	7.96	7.67	4.02	4.52	3.76
Merged-chr6-143132063-2	chr6	143131962	143132162	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	L2|LINE|L2	21869.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	7.27	2.26	4.56	9.25	5.32	3.76	10.96	14.97	8.85	3.01	9.04	6.89
Merged-chr9-70307217-1	chr9	70307117	70307317	+	799.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 4 of 27)	intron (NM_181072, intron 4 of 27)	98536.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	2.42	2.26	10.84	6.03	1.64	1.88	1.33	6.87	12.39	8.54	29.65	10.34
Merged-chr17-65907116-3	chr17	65907036	65907236	+	799.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21381.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	6.86	9.81	7.42	5.23	9.82	15.05	16.61	14.05	11.8	11.05	14.57	8.14
Merged-chr8-79501421-3	chr8	79501314	79501514	+	799.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101946.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.46	2.52	13.69	12.07	9.82	15.37	13.62	13.88	12.78	12.05	12.06	11.28
Merged-chr11-31868941-3	chr11	31868842	31869042	+	799.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1998.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	15.75	12.07	15.4	12.47	6.55	7.21	4.32	4.12	16.33	14.06	15.07	15.04
Merged-chr14-74868774-2	chr14	74868673	74868873	+	799.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	79104.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	11.31	6.04	6.28	12.47	8.18	5.02	7.97	9.62	5.7	1.51	5.02	3.76
Merged-chr14-31394992-2	chr14	31394879	31395079	+	799.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	22698.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.42	6.29	7.42	7.24	19.23	8.78	16.94	13.6	13.18	9.54	12.56	20.36
Merged-chrX-71439636-1	chrX	71439536	71439736	+	799.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199349, intron 5 of 9)	intron (NM_001199349, intron 5 of 9)	53213.0	NM_138309	171486.0	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	6.46	5.03	4.56	5.23	4.09	8.78	6.98	9.14	5.31	6.53	15.07	7.52
Merged-chr1-74376168-3	chr1	74376061	74376261	+	799.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	958.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	15.34	7.8	15.4	4.83	9.0	8.47	18.6	7.74	22.62	10.54	26.13	14.72
Merged-chr8-88272563-3	chr8	88272475	88272675	+	799.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007406, exon 1 of 28)	5' UTR (NM_007406, exon 1 of 28)	172.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	10.9	7.29	2.85	9.25	9.0	16.93	7.64	7.26	15.54	16.57	13.57	8.46
Merged-chr12-80257757-1	chr12	80257657	80257857	+	799.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	2614.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.46	6.79	2.28	7.64	12.68	9.41	0.66	5.47	1.18	2.51	8.54	7.52
Merged-chr16-33416480-3	chr16	33416392	33416592	+	799.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	RLTR40|LTR|ERVK	16047.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	7.67	18.11	8.56	15.69	1.64	6.27	13.95	7.88	12.59	10.04	7.03	3.13
Merged-chr7-45123304-2	chr7	45123208	45123408	+	799.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	-197.0	NR_000004	27212.0		NR_000004	ENSMUSG00000064767	Snord35b	Rnu35b|U35	small nucleolar RNA, C/D box 35B	snoRNA	7.27	4.53	2.28	5.63	5.73	9.09	5.98	6.34	11.41	10.04	20.1	5.95
Merged-chr8-94667141-2	chr8	94667036	94667236	+	799.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024269)	promoter-TSS (NM_024269)	45.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	10.9	6.79	11.98	7.64	4.5	11.6	14.28	14.1	7.67	11.05	11.56	4.39
Merged-chr3-28107761-2	chr3	28107624	28107824	+	799.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	123553.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.65	6.29	12.55	12.47	4.09	5.02	7.31	14.58	9.44	6.53	5.02	4.7
Merged-chr14-33205619-3	chr14	33205491	33205691	+	799.6348879999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11232.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	9.29	6.29	11.98	6.03	9.41	3.45	6.98	7.77	10.23	12.55	11.56	5.33
Merged-chr15-74970569-3	chr15	74970451	74970651	+	799.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12879.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	10.5	9.31	9.7	12.47	9.0	15.99	7.31	9.2	15.14	11.55	13.06	10.02
Merged-chr9-50965524-2	chr9	50965437	50965637	+	799.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	43536.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	10.09	6.29	16.54	14.08	10.23	7.21	8.97	9.93	5.51	9.04	9.04	8.77
Merged-chr1-92666321-2	chr1	92666210	92666410	+	799.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-17469.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.65	4.02	9.7	4.83	6.95	10.98	9.97	14.47	3.54	4.52	13.06	7.83
Merged-chr14-54781171-3	chr14	54781092	54781292	+	799.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016972, exon 1 of 11)	exon (NM_016972, exon 1 of 11)	694.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	18.57	9.81	11.98	12.47	10.64	10.03	14.62	8.72	8.65	18.58	24.12	10.65
Merged-chr2-28513204-3	chr2	28513082	28513282	+	799.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145834)	promoter-TSS (NM_001145834)	15.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	13.73	8.8	3.99	8.85	12.27	12.23	8.64	5.78	14.16	10.54	11.05	4.7
Merged-chr4-136142251-3	chr4	136142146	136142346	+	799.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1576.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.44	7.55	14.26	2.01	10.23	13.48	5.65	14.07	20.06	15.06	12.06	8.14
Merged-chr3-121307749-3	chr3	121307624	121307824	+	799.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024178, intron 2 of 3)	intron (NM_024178, intron 2 of 3)	15984.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	8.88	12.07	13.12	14.08	12.27	12.54	8.3	14.55	13.18	3.01	14.57	9.71
Merged-chr6-124854917-2	chr6	124854802	124855002	+	799.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013534, exon 4 of 15)	exon (NM_013534, exon 4 of 15)	2785.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	6.06	4.02	14.83	8.85	9.82	7.53	9.97	11.8	5.7	9.54	7.54	11.59
Merged-chr6-87189950-3	chr6	87189841	87190041	+	799.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 14 of 17)	intron (NM_054041, intron 14 of 17)	85195.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	7.67	6.29	15.4	12.87	9.41	3.14	12.29	16.07	13.77	13.05	12.56	5.33
Merged-chr12-38864869-2	chr12	38864777	38864977	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	81166.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	9.69	2.01	10.84	7.64	6.95	1.88	5.65	11.07	8.46	3.01	7.03	3.45
Merged-chr14-117710777-1	chr14	117710677	117710877	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	243070.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	2.42	7.04	4.56	5.63	2.86	4.39	4.98	7.04	5.9	8.03	8.04	4.7
Merged-chr4-63561009-1	chr4	63560909	63561109	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	782.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	5.65	6.04	2.28	1.61	0.82	6.59	9.63	6.56	6.49	2.01	6.03	1.88
Merged-chr2-172441369-2	chr2	172441274	172441474	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	796.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	5.65	5.53	12.55	6.44	22.09	20.07	18.6	17.72	10.42	7.03	11.05	8.77
Merged-chr8-83310074-1	chr8	83309974	83310174	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19726.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.0	2.26	1.14	8.04	4.09	5.64	16.61	24.25	7.28	3.51	6.03	2.19
Merged-chr11-74993259-2	chr11	74993161	74993361	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	67389.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.46	4.53	5.13	8.45	5.73	8.47	9.3	7.6	8.26	3.01	18.59	8.46
Merged-chr3-95283399-2	chr3	95283331	95283531	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_199475, exon 1 of 10)	5' UTR (NM_199475, exon 1 of 10)	496.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	10.5	12.32	4.56	4.42	14.32	14.11	7.31	10.68	13.18	14.56	11.56	13.16
Merged-chr17-25914118-2	chr17	25914017	25914217	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	5597.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	1.21	0.5	6.85	22.12	13.91	4.7	13.95	22.99	8.65	6.03	12.56	15.35
Merged-chr8-69953433-1	chr8	69953333	69953533	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	20950.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.25	0.0	1.14	2.41	1.64	5.96	5.65	9.28	0.98	1.51	1.51	3.45
Merged-chr3-127640025-2	chr3	127639932	127640132	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6896.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	5.25	3.52	9.7	2.41	8.59	6.59	2.99	9.5	15.93	6.53	16.08	8.14
Merged-chr5-140737418-2	chr5	140737330	140737530	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13303.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.06	8.3	10.84	14.48	6.14	9.72	9.63	16.49	5.7	1.0	3.01	4.7
Merged-chr15-81417092-3	chr15	81416935	81417135	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177310, intron 2 of 8)	ERVB7_2B-LTR_MM|LTR|ERVK	-8762.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	8.48	4.02	5.13	13.27	5.32	4.39	5.31	4.01	7.67	11.05	10.05	2.82
Merged-chr2-164794494-3	chr2	164794400	164794600	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133240, intron 5 of 5)	intron (NM_133240, intron 5 of 5)	8479.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	11.31	5.28	9.13	18.5	14.32	21.01	8.97	10.74	24.39	8.03	12.06	9.08
Merged-chr12-99639330-1	chr12	99639230	99639430	+	799.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11356.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	1.62	2.01	3.99	5.23	7.36	3.76	1.99	3.31	9.05	4.52	18.09	14.72
Merged-chr2-25305160-1	chr2	25305060	25305260	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008169, exon 6 of 20)	exon (NM_008169, exon 6 of 20)	13940.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	4.04	4.78	2.85	2.82	13.5	15.37	5.98	4.85	5.11	5.02	14.07	7.21
Merged-chr5-113899360-3	chr5	113899267	113899467	+	799.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	9339.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	14.94	18.36	17.11	11.66	18.41	12.23	15.28	18.28	11.21	11.55	9.04	7.21
Merged-chr10-52426098-3	chr10	52425995	52426195	+	799.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	MTD|LTR|ERVL-MaLR	8548.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	11.71	9.31	15.4	13.67	17.59	10.03	9.97	17.69	13.96	10.04	12.06	7.83
Merged-chr9-48548435-3	chr9	48548353	48548553	+	799.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC2|LINE|L1	53110.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	11.31	6.04	12.55	8.85	15.14	9.41	4.98	16.21	20.85	9.04	14.07	3.76
Merged-chr9-89227938-2	chr9	89227835	89228035	+	799.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	URR1B|DNA|hAT-Charlie	16551.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.27	2.52	4.56	5.23	11.45	10.03	13.29	7.4	11.41	5.52	17.59	11.28
Merged-chr13-111929442-2	chr13	111929313	111929513	+	799.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61477.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	13.73	9.06	17.68	10.46	5.32	7.21	4.65	7.23	3.54	2.51	2.51	1.25
Merged-chr13-30625336-2	chr13	30625221	30625421	+	799.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10278.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	6.46	7.8	2.85	6.03	11.05	11.6	8.64	10.29	12.19	14.56	19.6	4.7
Merged-chr14-21613251-1	chr14	21613151	21613351	+	799.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 3 of 16)	intron (NM_017479, intron 3 of 16)	101325.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.23	0.5	14.26	5.63	9.0	9.09	11.29	14.69	5.11	5.52	14.57	3.45
Merged-chr11-46311840-3	chr11	46311753	46311953	+	799.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 1 of 30)	CpG	505.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	14.54	9.81	5.13	7.24	11.86	7.21	11.96	10.99	8.26	14.56	6.03	9.71
Merged-chr4-138922181-3	chr4	138922040	138922240	+	799.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8193.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	7.27	7.8	1.14	5.63	10.64	5.33	1.66	4.18	12.0	10.54	13.06	4.7
Merged-chr6-90736812-3	chr6	90736708	90736908	+	799.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	CpG	-20279.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	5.65	11.32	12.55	16.09	20.05	8.78	9.3	10.4	13.77	11.55	16.58	11.28
Merged-chr3-41363524-2	chr3	41363429	41363629	+	799.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129670.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.06	5.28	9.7	10.86	16.36	6.27	10.63	23.47	1.38	0.0	0.5	0.0
Merged-chr1-64080383-2	chr1	64080267	64080467	+	799.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-37866.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	3.23	6.04	6.85	8.04	11.05	12.86	16.61	11.61	8.65	9.04	12.56	7.83
Merged-chr7-145029808-2	chr7	145029723	145029923	+	799.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89898.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.44	6.04	6.85	7.64	9.0	8.15	8.3	11.21	14.16	13.05	7.54	10.65
Merged-chr3-41366986-2	chr3	41366880	41367080	+	799.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	126219.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.86	8.05	9.13	13.27	15.14	12.23	13.29	28.71	1.18	0.0	1.51	4.07
Merged-chr7-43668804-2	chr7	43668714	43668914	+	799.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-3217.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	14.94	9.31	11.41	10.86	4.09	9.09	1.99	4.09	12.59	15.57	14.57	8.77
Merged-chr5-117884568-2	chr5	117884462	117884662	+	799.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	ORR1E|LTR|ERVL-MaLR	17723.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.04	6.29	10.27	5.23	13.91	22.89	22.26	21.7	6.69	7.53	14.57	9.71
Merged-chr17-35051386-2	chr17	35051280	35051480	+	799.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1137.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	9.29	6.29	1.14	4.02	12.27	10.98	6.98	5.83	18.29	11.05	14.07	9.71
Merged-chr19-42177126-2	chr19	42177038	42177238	+	799.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164531, intron 2 of 11)	intron (NM_001164531, intron 2 of 11)	6571.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	4.04	6.79	11.98	13.67	7.36	6.59	12.29	9.42	6.49	4.02	4.02	7.21
Merged-chr10-37197073-1	chr10	37196973	37197173	+	799.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-58147.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.06	5.03	7.42	0.4	10.23	4.7	6.64	6.84	4.33	1.0	8.54	3.76
Merged-chr13-98768484-1	chr13	98768384	98768584	+	799.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172591, intron 8 of 25)	intron (NM_172591, intron 8 of 25)	46965.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.65	2.01	19.97	9.25	5.32	6.59	5.65	15.45	11.6	4.52	7.03	5.33
Merged-chr8-117285248-3	chr8	117285148	117285348	+	799.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	28229.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	10.09	8.05	11.98	2.82	11.86	14.74	3.32	13.49	15.54	8.54	10.05	7.52
Merged-chr10-127381173-3	chr10	127381077	127381277	+	799.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359244, intron 1 of 25)	intron (NM_001359244, intron 1 of 25)	509.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	8.48	9.81	2.28	4.02	17.18	13.17	8.3	8.78	16.72	11.55	12.06	10.34
Merged-chr19-41324011-3	chr19	41323914	41324114	+	799.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 7 of 16)	MIR|SINE|MIR	-60010.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	12.11	6.54	12.55	8.45	10.64	21.95	10.96	16.71	14.16	13.05	24.12	7.52
Merged-chr1-151932372-3	chr1	151932263	151932463	+	799.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	157957.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	19.38	10.06	17.68	16.89	11.45	10.03	6.64	10.93	9.64	9.54	13.57	13.78
Merged-chr6-124859962-3	chr6	124859842	124860042	+	799.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013533, intron 3 of 4)	intron (NM_013533, intron 3 of 4)	-2255.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	7.27	5.79	11.98	10.05	10.64	11.92	9.97	12.34	14.95	13.56	15.07	11.59
Merged-chr3-10307000-3	chr3	10306890	10307090	+	799.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5807.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	17.77	7.8	9.13	15.69	9.41	15.37	13.95	6.7	10.82	13.05	18.09	7.83
Merged-chr15-31466520-3	chr15	31466443	31466643	+	799.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12854.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	8.48	8.3	7.99	6.84	21.27	29.79	10.3	23.02	11.21	12.55	17.08	11.28
Merged-chr6-4997763-1	chr6	4997663	4997863	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	94443.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.46	1.26	7.99	3.22	9.0	7.53	5.65	9.11	5.9	4.02	5.53	1.57
Merged-chr18-77663934-2	chr18	77663817	77664017	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178670, intron 2 of 4)	Tigger7|DNA|TcMar-Tigger	50093.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	4.04	4.28	4.56	7.64	9.82	11.92	10.3	10.23	10.42	18.08	18.59	9.08
Merged-chr7-80788524-2	chr7	80788420	80788620	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	MIRb|SINE|MIR	14811.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.23	3.27	2.28	10.46	11.86	7.21	3.65	9.31	10.62	12.05	6.53	9.08
Merged-chr10-56840919-2	chr10	56840816	56841016	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	408935.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	2.83	6.54	3.42	2.01	11.45	10.98	5.98	8.64	11.01	5.02	16.58	7.83
Merged-chr4-120934071-2	chr4	120933987	120934187	+	799.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005788, intron 5 of 5)	intron (NM_001005788, intron 5 of 5)	-9082.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	2.42	6.79	16.54	11.26	8.59	7.21	7.97	12.31	2.75	0.5	3.52	1.25
Merged-chr2-31077008-2	chr2	31076916	31077116	+	799.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	MTD|LTR|ERVL-MaLR	19484.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	8.88	5.53	10.27	10.86	21.27	6.27	9.97	14.61	20.06	5.02	5.53	6.27
Merged-chr2-168574043-2	chr2	168573950	168574150	+	799.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	16315.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.46	8.55	8.56	9.65	10.23	13.8	6.64	13.68	3.93	5.02	7.03	2.19
Merged-chr3-65391790-1	chr3	65391690	65391890	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026155, intron 1 of 4)	intron (NM_026155, intron 1 of 4)	763.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.23	4.28	4.56	0.8	2.05	4.08	8.64	5.47	6.69	10.04	8.04	9.71
Merged-chr9-20889385-3	chr9	20889291	20889491	+	799.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145610, exon 3 of 11)	exon (NM_145610, exon 3 of 11)	1216.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	15.34	10.82	14.83	7.64	11.86	5.96	5.65	4.96	14.16	11.55	23.62	12.53
Merged-chr4-151068902-2	chr4	151068787	151068987	+	799.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-10934.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	10.9	3.02	5.13	3.22	10.23	9.09	6.31	7.65	9.83	5.02	16.58	4.07
Merged-chr16-95705577-6	chr16	95705512	95705712	+	799.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	MER33|DNA|hAT-Charlie	3205.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.25	9.06	3.42	7.64	13.09	16.62	4.98	7.12	5.9	14.06	20.1	7.52
Merged-chr9-13466568-3	chr9	13466472	13466672	+	799.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35211.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.04	8.8	15.97	15.28	6.55	9.09	7.64	8.94	10.62	9.54	12.56	7.52
Merged-chr15-6733244-3	chr15	6733180	6733380	+	799.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	24899.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	15.75	9.06	6.85	11.66	5.32	12.54	10.3	17.27	11.6	6.53	5.53	6.89
Merged-chr5-34518115-3	chr5	34518023	34518223	+	799.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4144.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	21.8	8.3	7.99	6.84	12.27	23.52	11.29	7.6	28.91	8.54	19.09	9.08
Merged-chr7-84171508-2	chr7	84171409	84171609	+	799.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19616.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.23	1.01	1.14	3.62	6.14	2.2	2.99	6.93	14.95	5.02	20.1	8.14
Merged-chr4-122835845-2	chr4	122835750	122835950	+	799.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	-377.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	6.06	3.27	8.56	6.03	7.36	12.54	3.65	6.7	10.03	14.56	11.05	4.39
Merged-chr14-118506803-2	chr14	118506701	118506901	+	799.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	85671.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	7.67	2.01	12.55	14.88	7.36	10.66	16.61	18.56	2.16	3.51	0.5	0.63
Merged-chr9-47588519-2	chr9	47588424	47588624	+	799.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	58172.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	8.88	10.06	9.13	7.64	18.41	14.42	8.97	10.43	0.79	0.5	0.0	0.94
Merged-chr1-155224349-3	chr1	155224240	155224440	+	799.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65637.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	7.67	11.07	11.41	7.24	9.0	18.81	17.27	19.91	12.59	14.56	31.15	6.89
Merged-chr3-89421578-2	chr3	89421477	89421677	+	799.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113331)	promoter-TSS (NM_001113331)	-44.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	6.46	6.29	11.41	2.82	10.64	18.81	4.98	8.44	12.19	13.56	18.09	4.7
Merged-chr5-117134157-3	chr5	117134134	117134334	+	799.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	646.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.85	6.79	5.7	10.86	11.86	5.64	4.65	13.29	11.01	3.01	6.53	4.39
Merged-chr12-111907732-3	chr12	111907597	111907797	+	799.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	358.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	16.15	10.82	18.25	8.85	18.82	10.66	6.64	16.43	15.14	10.04	20.1	7.83
Merged-chr10-75229219-2	chr10	75229135	75229335	+	799.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145826, intron 3 of 18)	URR1A|DNA|hAT-Charlie	16845.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.85	4.28	6.85	3.22	8.18	6.9	10.96	17.36	10.62	9.04	14.57	7.52
Merged-chr7-96629425-2	chr7	96629332	96629532	+	799.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	172117.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	14.54	8.3	14.83	12.07	12.27	6.27	6.64	12.9	0.0	0.5	2.51	0.31
Merged-chr7-119920662-2	chr7	119920568	119920768	+	799.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20557.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	4.04	5.28	5.7	3.22	12.68	4.7	8.3	3.76	17.31	12.55	20.6	16.29
Merged-chr8-71637602-3	chr8	71637398	71637598	+	799.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 35 of 41)	intron (NM_001029873, intron 35 of 41)	-6392.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.63	4.28	3.42	3.22	0.0	5.64	3.65	3.22	7.47	3.51	5.53	4.39
Merged-chr14-70206611-1	chr14	70206511	70206711	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	-589.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.81	1.51	0.0	4.42	4.5	2.2	5.98	1.21	0.98	2.51	1.0	4.7
Merged-chr10-16960604-2	chr10	16960511	16960711	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 5 of 8)	L1MCa|LINE|L1	135171.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	12.52	23.39	5.7	12.07	5.73	15.99	2.99	2.38	18.29	13.56	12.06	2.51
Merged-chr17-72943605-1	chr17	72943505	72943705	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25300.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.04	5.53	5.7	3.22	5.73	2.51	7.97	7.46	2.36	6.03	2.51	3.76
Merged-chr1-53782540-3	chr1	53782403	53782603	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	2712.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	6.86	2.26	13.69	12.07	8.59	5.64	12.29	10.29	7.08	7.53	18.09	8.14
Merged-chr16-38442391-1	chr16	38442291	38442491	+	799.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9246.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	2.42	3.02	2.28	3.62	3.27	10.66	5.65	3.14	9.83	5.52	9.04	10.02
Merged-chr7-49399524-2	chr7	49399425	49399625	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	153336.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	7.67	8.55	1.71	4.02	15.55	16.62	13.29	14.1	10.03	3.51	7.03	3.76
Merged-chr10-127340087-1	chr10	127339987	127340187	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	1492.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	6.06	1.26	6.85	5.63	2.05	8.78	4.32	8.16	3.74	6.03	11.05	3.13
Merged-chr17-35825046-1	chr17	35824946	35825146	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008027, intron 6 of 12)	B1F|SINE|Alu	1689.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	8.48	9.06	6.28	4.02	4.09	12.86	3.65	1.57	4.13	14.06	3.01	6.27
Merged-chr9-108626615-1	chr9	108626515	108626715	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151664, intron 3 of 15)	intron (NR_151664, intron 3 of 15)	22793.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	4.04	5.28	11.98	4.83	4.91	8.15	6.64	9.81	4.92	10.04	8.54	2.19
Merged-chr1-121441236-1	chr1	121441136	121441336	+	799.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 3 of 23)	intron (NM_029955, intron 3 of 23)	10169.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	10.5	19.12	17.68	14.88	11.86	9.41	11.29	11.58	10.42	12.55	12.06	10.96
Merged-chr19-47905763-1	chr19	47905663	47905863	+	799.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	13536.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	5.65	2.01	7.99	3.62	2.45	5.02	3.32	3.34	6.88	3.01	20.1	8.77
Merged-chr10-40138209-2	chr10	40138140	40138340	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4014.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.44	2.77	5.7	9.65	9.41	4.39	9.97	12.79	8.46	6.03	7.54	3.13
Merged-chr5-34243583-1	chr5	34243483	34243683	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	44741.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	6.86	2.52	0.0	2.82	4.5	5.64	7.97	8.21	4.13	10.04	6.03	1.88
Merged-chr5-16554563-1	chr5	16554463	16554663	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289458, intron 2 of 18)	(TGGGGG)n|Simple_repeat|Simple_repeat	662.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	2.83	3.02	3.42	2.01	6.14	4.7	6.98	6.67	4.33	6.53	8.04	5.33
Merged-chr15-88035634-1	chr15	88035534	88035734	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-239691.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	2.42	2.26	2.85	8.45	7.36	4.08	3.32	12.39	0.59	0.0	0.5	2.82
Merged-chr5-76179425-3	chr5	76179326	76179526	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4454.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	10.09	8.8	11.98	8.85	14.32	18.19	9.63	12.06	14.55	15.57	12.06	7.52
Merged-chr19-45388631-1	chr19	45388531	45388731	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009771, intron 1 of 13)	intron (NM_009771, intron 1 of 13)	24897.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	4.04	7.04	10.27	5.63	3.27	12.54	3.99	6.9	4.13	6.53	1.0	4.07
Merged-chr8-41053472-2	chr8	41053347	41053547	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	1349.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	7.27	2.77	5.7	2.41	8.18	5.02	8.64	20.38	13.96	4.52	8.04	8.77
Merged-chr10-75227250-1	chr10	75227150	75227350	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145826, intron 2 of 18)	MIR|SINE|MIR	14860.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	2.42	5.53	1.14	4.83	2.45	7.84	3.99	7.18	5.7	5.02	6.53	5.01
Merged-chr4-63159115-1	chr4	63159015	63159215	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4943.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	6.86	6.79	6.85	0.8	4.91	5.33	3.99	8.1	3.34	0.5	7.54	4.07
Merged-chr1-151653611-2	chr1	151653522	151653722	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82249.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.85	5.53	1.71	2.41	12.27	14.42	6.31	2.44	12.98	11.05	3.01	5.64
Merged-chr11-83191240-3	chr11	83191145	83191345	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011409)	promoter-TSS (NM_011409)	-85.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	19.79	11.07	5.7	7.64	20.86	17.25	4.98	3.93	8.46	14.06	10.55	6.27
Merged-chr18-56427898-1	chr18	56427798	56427998	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360917, intron 1 of 13)	ORR1F|LTR|ERVL-MaLR	-4234.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.63	5.03	2.28	7.24	2.45	5.33	7.64	6.34	3.93	3.01	10.05	1.88
Merged-chr8-20013492-1	chr8	20013392	20013592	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	283916.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	1.62	3.02	5.7	2.41	4.09	3.45	5.31	5.33	2.56	0.5	3.01	1.57
Merged-chr7-28762016-1	chr7	28761916	28762116	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001306222, intron 2 of 5)	intron (NM_001306222, intron 2 of 5)	4628.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	3.23	9.56	0.0	0.0	0.82	1.57	0.66	3.39	1.57	1.0	0.5	0.0
Merged-chr2-18892925-1	chr2	18892825	18893025	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-91107.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	1.21	5.53	3.42	4.42	4.5	10.03	1.66	7.79	5.9	5.02	6.03	4.39
Merged-chr4-32170294-1	chr4	32170194	32170394	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	206187.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.04	1.51	0.57	4.83	2.45	5.02	6.64	6.42	10.23	9.54	25.12	3.13
Merged-chrX-47928224-1	chrX	47928124	47928324	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177215, intron 4 of 23)	intron (NM_177215, intron 4 of 23)	15768.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	10.09	1.51	9.13	8.45	10.64	6.27	16.94	16.37	10.42	5.02	6.03	3.13
Merged-chr16-32644338-1	chr16	32644238	32644438	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-305.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	2.42	2.26	2.28	7.24	9.0	5.02	7.64	10.21	9.05	3.51	6.03	5.01
Merged-chr13-9634980-1	chr13	9634880	9635080	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	128830.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.85	1.51	3.99	7.24	11.05	2.51	7.31	6.73	1.18	1.0	10.05	3.13
Merged-chr13-60016347-1	chr13	60016247	60016447	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13364.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.0	0.0	1.14	0.0	4.5	1.25	4.32	10.88	0.0	1.0	0.5	0.94
Merged-chr2-6336125-1	chr2	6336025	6336225	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	13368.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	2.42	2.52	0.0	3.22	2.45	1.88	5.31	5.41	6.69	2.01	3.01	2.51
Merged-chr13-24713721-2	chr13	24713601	24713801	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029679, exon 17 of 23)	exon (NM_029679, exon 17 of 23)	48236.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	6.06	7.8	1.14	3.62	13.91	17.87	5.65	9.84	9.44	5.02	11.05	2.51
Merged-chr3-100430490-2	chr3	100430368	100430568	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	4063.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	8.08	1.51	4.56	3.62	0.82	4.7	11.63	10.6	10.03	12.05	9.04	4.07
Merged-chr2-113478633-2	chr2	113478531	113478731	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	37567.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.63	5.28	11.41	22.52	2.05	2.82	18.27	14.1	5.9	3.51	7.54	3.45
Merged-chr19-32594109-2	chr19	32594011	32594211	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1604.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	10.09	10.31	5.13	6.84	12.27	14.42	6.31	12.67	10.62	5.02	5.53	5.33
Merged-chr1-64907901-1	chr1	64907801	64908001	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	48923.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	5.65	6.54	6.85	4.83	9.41	8.78	7.31	17.27	4.72	3.01	5.02	4.39
Merged-chr12-4232966-3	chr12	4232857	4233057	+	798.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1008.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	9.29	9.81	15.4	14.08	11.86	9.72	10.63	20.07	17.11	7.53	8.54	7.21
Merged-chr1-173877361-2	chr1	173877261	173877461	+	798.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	2826.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	6.86	6.04	5.13	8.04	8.59	4.08	7.31	8.72	14.16	13.05	15.58	9.4
Merged-chr19-53895009-2	chr19	53894914	53895114	+	798.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	2783.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	9.29	1.51	3.42	5.63	11.45	3.76	6.64	13.32	10.23	11.55	12.56	6.89
Merged-chr9-56075449-3	chr9	56075343	56075543	+	798.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14533.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	11.71	9.56	6.85	10.86	17.18	15.68	4.32	10.79	17.31	11.05	13.57	9.4
Merged-chr8-13874971-2	chr8	13874876	13875076	+	798.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181854, intron 1 of 1)	PB1|SINE|Alu	5335.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	4.04	7.8	22.82	6.44	14.32	13.48	4.65	11.33	4.13	7.53	12.06	9.4
Merged-chr12-73621914-2	chr12	73621802	73622002	+	798.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	37106.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	10.5	5.53	5.7	7.64	11.45	10.66	5.65	7.32	10.62	6.53	25.12	7.21
Merged-chr8-117480673-3	chr8	117480555	117480755	+	798.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17620.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	4.44	8.8	14.83	5.23	7.77	7.84	6.31	10.09	15.93	18.58	24.62	15.98
Merged-chr14-54463272-3	chr14	54463158	54463358	+	798.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-889.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	6.06	7.8	14.83	12.87	16.36	13.8	6.98	8.24	19.47	15.06	24.12	7.83
Merged-chr9-58804343-2	chr9	58804225	58804425	+	798.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-19187.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	9.29	10.82	11.41	1.21	9.0	15.05	9.63	2.1	9.24	4.52	5.02	3.13
Merged-chr5-113122523-2	chr5	113122422	113122622	+	798.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172884, intron 1 of 7)	MIR|SINE|MIR	16063.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	10.9	18.11	11.98	6.84	2.86	13.48	7.97	4.37	0.2	0.0	0.5	1.25
Merged-chr2-29649917-2	chr2	29649829	29650029	+	798.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	30209.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	11.31	3.52	1.71	0.0	4.91	13.8	2.33	7.18	15.54	18.58	15.07	4.7
Merged-chr7-90069993-3	chr7	90069897	90070097	+	798.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40838.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.46	6.54	8.56	3.62	9.0	10.03	9.63	7.96	19.28	14.56	16.08	5.33
Merged-chr11-95827224-3	chr11	95827148	95827348	+	798.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	2748.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	16.56	7.04	15.97	13.27	8.59	14.74	5.98	8.78	12.0	12.05	10.55	13.16
Merged-chr9-50522802-3	chr9	50522721	50522921	+	798.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011220, intron 4 of 5)	intron (NM_011220, intron 4 of 5)	5820.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	9.29	6.04	13.69	6.44	13.09	12.23	7.64	19.71	12.98	11.55	25.12	15.35
Merged-chr13-101678754-2	chr13	101678623	101678823	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13907.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.08	6.54	2.28	7.64	6.95	8.78	8.3	3.76	14.16	5.52	17.59	12.84
Merged-chr8-67506565-2	chr8	67506472	67506672	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER3D-int|LTR|ERVK	11624.0	NM_010874	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	4.04	3.27	4.56	9.65	4.5	5.64	11.29	12.48	9.44	7.03	22.61	11.9
Merged-chr7-129301688-2	chr7	129301585	129301785	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44591.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.04	5.28	3.99	12.47	7.36	12.54	8.3	13.15	21.05	12.55	10.05	9.71
Merged-chr19-60817771-2	chr19	60817675	60817875	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	6220.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	7.27	2.52	4.56	5.63	6.55	2.2	5.31	11.52	23.41	6.03	20.1	5.33
Merged-chr7-120226633-2	chr7	120226548	120226748	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026458, intron 9 of 30)	intron (NM_026458, intron 9 of 30)	22684.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.0	0.0	0.0	1.21	4.09	4.08	6.31	11.75	9.83	2.51	8.04	5.33
Merged-chr8-36173199-1	chr8	36173099	36173299	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17189.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	1.62	4.78	11.41	5.23	7.77	4.39	6.31	9.03	1.57	0.0	3.01	3.76
Merged-chr12-32230265-2	chr12	32230163	32230363	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21614.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.25	5.28	11.98	8.45	18.0	16.62	16.94	7.79	11.01	4.02	16.08	8.46
Merged-chr15-18823614-2	chr15	18823520	18823720	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	3291.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	4.85	5.03	12.55	2.82	10.23	9.41	7.97	18.45	12.98	16.57	16.08	5.64
Merged-chr11-50207402-2	chr11	50207371	50207571	+	798.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011018, exon 3 of 8)	exon (NM_011018, exon 3 of 8)	3349.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	7.67	9.81	5.7	4.83	2.86	9.09	5.65	2.02	7.67	5.02	7.03	4.7
Merged-chr5-140818816-1	chr5	140818716	140818916	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	11615.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	7.67	4.53	6.28	2.82	8.59	8.47	8.3	9.42	5.51	6.03	6.03	5.01
Merged-chr8-24540997-2	chr8	24540875	24541075	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	35358.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	5.25	8.05	4.56	0.4	6.95	14.42	6.98	4.35	5.9	15.06	16.58	3.76
Merged-chr12-79137093-1	chr12	79136993	79137193	+	798.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	L2b|LINE|L2	6305.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	1.62	2.26	3.99	4.02	5.32	6.9	7.31	13.99	9.24	4.52	3.52	4.07
Merged-chrX-71214333-3	chrX	71214228	71214428	+	798.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019926)	promoter-TSS (NM_019926)	-678.0	NM_001164192	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	14.13	9.31	8.56	13.67	11.45	10.66	13.95	10.6	13.37	11.05	14.57	8.46
Merged-chr3-88592862-3	chr3	88592764	88592964	+	798.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13256.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	21.8	7.8	7.99	9.25	14.32	16.31	10.96	7.88	12.19	16.57	11.05	11.9
Merged-chr10-23180240-2	chr10	23180135	23180335	+	798.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	169655.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	2.02	2.77	3.42	0.8	11.86	11.29	10.96	11.97	11.21	7.53	11.05	9.08
Merged-chr5-65515122-2	chr5	65515012	65515212	+	798.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22133.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	1.21	3.27	9.13	1.61	5.32	8.78	2.66	12.11	8.26	10.54	12.06	4.07
Merged-chr16-92692358-3	chr16	92692252	92692452	+	798.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	4977.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	14.13	11.32	14.26	16.89	9.0	14.11	5.98	14.07	18.69	12.55	13.06	7.83
Merged-chr7-79848182-3	chr7	79848069	79848269	+	798.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008486)	promoter-TSS (NM_008486)	41.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	12.52	11.07	14.26	3.22	8.59	7.84	4.65	9.06	11.21	8.54	9.04	10.34
Merged-chr10-63223279-3	chr10	63223171	63223371	+	798.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19319.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	18.17	9.06	7.42	16.09	6.95	5.96	6.64	12.42	23.8	15.57	24.62	10.96
Merged-chr11-43412952-3	chr11	43412855	43413055	+	798.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13026.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	14.54	5.53	13.69	17.29	7.77	12.86	5.31	12.2	16.52	15.57	23.11	8.14
Merged-chr1-152571537-2	chr1	152571442	152571642	+	798.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	53675.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.85	7.55	4.56	4.02	12.27	6.27	7.64	10.35	12.0	12.55	6.53	12.22
Merged-chr12-70714418-5	chr12	70714276	70714476	+	798.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111138.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	3.63	8.8	5.7	6.03	3.27	6.27	5.65	7.29	5.7	6.53	2.51	3.45
Merged-chr7-145106650-1	chr7	145106550	145106750	+	798.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101469.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.25	3.27	6.28	2.41	17.59	15.37	8.97	5.75	8.06	10.54	7.54	5.64
Merged-chr2-148500534-4	chr2	148500494	148500694	+	798.55835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57059.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.65	4.53	1.14	10.05	5.73	1.88	10.96	10.51	8.85	9.04	12.56	4.7
Merged-chr4-97778539-3	chr4	97778431	97778631	+	798.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 1 of 10)	CpG	905.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.63	11.07	9.7	7.24	11.05	8.15	10.3	15.73	9.64	13.56	11.05	8.14
Merged-chr8-104376949-3	chr8	104376785	104376985	+	798.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	L1MC|LINE|L1	18922.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	7.67	4.78	13.12	10.05	8.18	5.96	6.31	11.36	9.24	6.03	6.53	8.77
Merged-chr19-11350265-3	chr19	11350127	11350327	+	798.538879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	-14081.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	11.31	13.33	4.56	11.26	15.55	8.15	6.64	9.2	11.01	7.03	4.02	6.27
Merged-chr10-88794895-2	chr10	88794792	88794992	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175158, intron 22 of 61)	intron (NM_175158, intron 22 of 61)	31922.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	5.25	3.27	16.54	10.05	23.32	12.86	12.62	17.41	6.88	7.03	13.06	14.41
Merged-chr6-124874981-2	chr6	124874880	124875080	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013488, intron 3 of 9)	intron (NM_013488, intron 3 of 9)	-10997.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	15.34	10.56	7.99	8.45	11.86	13.48	3.99	7.79	15.93	10.04	7.03	2.82
Merged-chr8-124290990-1	chr8	124290890	124291090	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	59596.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.25	5.03	6.28	2.01	6.14	3.76	11.63	9.67	0.0	0.0	0.0	1.57
Merged-chr8-82366978-2	chr8	82366907	82367107	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	L1_Mus3|LINE|L1	35579.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.81	6.54	7.42	4.02	10.64	5.96	4.32	2.24	8.06	7.53	9.55	5.33
Merged-chr4-101652933-1	chr4	101652833	101653033	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	5150.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.83	4.78	3.99	8.85	2.86	5.64	8.64	2.52	1.97	4.02	0.5	1.88
Merged-chr7-145029284-3	chr7	145029209	145029409	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89384.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.88	11.57	8.56	10.05	10.23	9.41	10.3	8.16	18.69	8.54	13.57	6.27
Merged-chrX-12858674-1	chrX	12858574	12858774	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78199.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	6.46	4.78	5.7	7.24	9.41	9.09	5.98	6.22	5.51	4.52	5.53	4.7
Merged-chrX-101636642-2	chrX	101636530	101636730	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3421.0	NM_139144	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	4.85	2.52	4.56	5.63	6.14	9.72	2.99	10.88	6.49	11.55	14.57	5.33
Merged-chr14-66230118-1	chr14	66230018	66230218	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-16294.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.02	5.03	7.42	2.41	8.59	4.08	11.96	6.95	4.33	12.55	8.04	3.13
Merged-chr4-149143758-2	chr4	149143656	149143856	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6156.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	13.33	6.04	7.99	8.45	16.77	17.25	8.64	15.53	4.72	3.51	5.53	5.33
Merged-chr7-66354676-2	chr7	66354571	66354771	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	(CAAAA)n|Simple_repeat|Simple_repeat	27053.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	6.06	12.07	16.54	7.24	5.32	14.42	2.66	5.86	9.05	7.53	11.05	5.95
Merged-chrX-56827674-1	chrX	56827574	56827774	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5349.0	NM_177293	320923.0	Mm.186745	NM_177293	ENSMUSG00000067878	Map7d3	4933424A10Rik|Mtap7d3	MAP7 domain containing 3	protein-coding	6.46	5.03	7.42	7.24	12.27	9.41	6.98	18.08	3.93	8.03	13.06	4.39
Merged-chr14-25858126-1	chr14	25858026	25858226	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	15971.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	8.08	5.03	7.99	4.02	9.82	2.2	8.3	6.56	12.98	4.02	3.01	1.88
Merged-chr15-8446085-3	chr15	8445965	8446165	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1602.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	14.13	9.06	4.56	5.23	11.45	8.78	6.64	5.19	11.21	9.04	7.03	10.34
Merged-chr13-100669613-1	chr13	100669513	100669713	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_183115, exon 1 of 12)	5' UTR (NM_183115, exon 1 of 12)	132.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	1.62	2.26	0.0	0.8	3.68	2.51	2.99	2.07	0.98	4.52	1.51	7.83
Merged-chr1-72226421-1	chr1	72226321	72226521	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	U2|snRNA|snRNA	-14107.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	4.04	8.8	1.14	10.86	9.41	11.6	8.3	6.25	14.95	5.52	14.57	5.64
Merged-chr13-95870238-1	chr13	95870138	95870338	+	798.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	21684.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.21	1.51	1.14	4.02	0.0	0.63	0.33	3.76	11.41	2.51	9.55	15.04
Merged-chrX-101645712-2	chrX	101645615	101645815	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290535, intron 3 of 21)	intron (NM_001290535, intron 3 of 21)	5497.0	NM_001290535	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	13.33	10.06	10.27	7.24	6.14	12.54	5.65	10.71	8.65	4.52	6.53	2.82
Merged-chr16-94488540-2	chr16	94488441	94488641	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38088.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	12.11	6.04	4.56	10.46	12.27	23.83	10.63	16.21	17.9	7.53	10.05	4.07
Merged-chr10-57688161-1	chr10	57688061	57688261	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	37180.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	6.06	2.26	5.7	5.63	6.14	10.03	5.31	13.79	5.9	13.05	10.05	3.45
Merged-chr12-102392170-2	chr12	102392089	102392289	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	47624.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.85	5.53	4.56	2.82	11.45	1.25	3.32	4.26	13.96	14.56	12.56	8.46
Merged-chr8-41006470-2	chr8	41006375	41006575	+	798.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10993.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	12.11	6.04	3.99	14.48	9.82	11.6	4.32	12.31	5.7	3.01	3.01	7.21
Merged-chr7-88226346-3	chr7	88226260	88226460	+	798.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51725.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	14.54	11.82	21.68	10.05	6.95	7.53	10.63	13.91	9.44	9.04	8.04	8.46
Merged-chr18-23566405-3	chr18	23566314	23566514	+	798.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361215, intron 3 of 19)	intron (NM_001361215, intron 3 of 19)	68932.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	10.9	9.81	3.42	4.42	16.36	12.86	14.62	26.24	8.85	11.05	7.54	8.46
Merged-chr10-68541825-3	chr10	68541740	68541940	+	798.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028491)	promoter-TSS (NM_028491)	35.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	13.73	7.29	6.28	14.48	12.27	7.21	17.27	18.93	10.42	10.54	21.61	9.08
Merged-chr4-141663732-2	chr4	141663635	141663835	+	798.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	CpG	380.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.65	8.3	9.13	8.04	2.86	7.53	8.64	4.15	13.37	13.56	16.08	15.35
Merged-chr5-107980135-1	chr5	107980035	107980235	+	798.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	L1MB2|LINE|L1	6942.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	7.67	4.02	6.85	3.22	11.05	9.72	6.31	9.2	8.26	4.02	7.54	3.76
Merged-chr2-166447499-3	chr2	166447396	166447596	+	798.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	45.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	8.08	5.03	18.83	7.24	24.55	13.48	10.63	24.34	17.31	14.06	25.12	9.4
Merged-chr1-156037393-3	chr1	156037285	156037485	+	798.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-905.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	15.75	16.1	11.98	9.65	10.23	15.99	14.62	9.11	15.34	8.54	15.07	16.92
Merged-chr6-42433726-3	chr6	42433633	42433833	+	798.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207028)	promoter-TSS (NM_207028)	-802.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	9.29	7.29	18.25	10.46	6.95	14.11	8.64	11.94	14.16	6.03	12.56	4.07
Merged-chr13-98354303-2	chr13	98354213	98354413	+	798.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008242)	promoter-TSS (NM_008242)	68.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	5.65	10.31	3.42	12.87	2.05	6.9	10.3	7.96	5.7	14.06	13.06	9.08
Merged-chrY-90812843-1	chrY	90812743	90812943	+	798.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	IMPB_01|Satellite|Satellite	26563.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.4	0.75	0.0	0.0	0.41	1.25	0.0	0.64	18.69	8.03	6.53	12.84
Merged-chr9-99240784-1	chr9	99240684	99240884	+	798.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2557.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	1.62	5.03	5.7	8.85	4.91	10.98	8.3	12.5	6.49	7.03	9.04	7.83
Merged-chr6-145517135-1	chr6	145517035	145517235	+	798.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82210.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	0.0	0.75	11.98	4.02	6.14	8.15	7.64	13.32	0.59	0.0	0.5	0.0
Merged-chrX-74248757-3	chrX	74248652	74248852	+	798.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2218.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	10.9	8.05	14.83	5.63	11.05	10.35	9.97	10.09	13.57	13.56	16.58	9.71
Merged-chr5-5719480-1	chr5	5719380	5719580	+	798.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-24912.0	NM_028734	74051.0	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	2.02	2.52	1.14	1.61	3.68	9.41	12.95	22.99	2.36	4.52	1.51	3.76
Merged-chr19-42144758-3	chr19	42144668	42144868	+	798.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2621.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	8.48	9.06	11.41	15.69	9.41	15.05	9.3	13.12	12.19	10.54	11.56	14.1
Merged-chrX-85919189-3	chrX	85919103	85919303	+	798.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48930.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	10.9	12.83	24.53	11.26	12.68	9.41	15.61	18.34	22.82	11.55	17.08	9.4
Merged-chr9-61978034-2	chr9	61977916	61978116	+	798.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	-31217.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	10.5	6.79	17.68	17.29	8.59	10.66	19.27	23.47	23.21	12.05	23.62	19.74
Merged-chr4-155959490-3	chr4	155959392	155959592	+	798.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039157, exon 8 of 8)	3' UTR (NM_001039157, exon 8 of 8)	-2820.0	NM_026125	67389.0	Mm.29140	NM_026125	ENSMUSG00000023571	C1qtnf12	1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin	C1q and tumor necrosis factor related 12	protein-coding	13.73	15.09	16.54	9.25	15.14	15.68	8.64	14.33	7.67	8.03	8.54	8.77
Merged-chr3-101030772-1	chr3	101030672	101030872	+	798.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1277.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	4.44	2.77	2.28	2.01	6.14	5.64	10.63	8.1	2.36	2.51	2.51	0.0
Merged-chr1-74362915-2	chr1	74362860	74363060	+	798.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033345, intron 3 of 9)	intron (NM_001033345, intron 3 of 9)	852.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	2.83	0.25	2.28	0.0	6.14	8.15	2.33	3.93	8.85	9.04	11.56	5.64
Merged-chr12-4539682-3	chr12	4539594	4539794	+	798.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15581.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	7.27	9.56	20.54	10.46	15.55	20.07	8.3	14.3	17.7	7.53	15.58	15.66
Merged-chr19-10979387-3	chr19	10979302	10979502	+	798.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-4732.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	10.09	11.07	19.97	9.25	16.36	14.11	7.97	7.46	15.34	13.05	5.53	13.78
Merged-chr6-37589760-3	chr6	37589663	37589863	+	798.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59590.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	9.69	8.8	5.7	10.86	11.45	15.68	8.3	9.36	14.75	9.54	16.08	14.1
Merged-chr1-55836898-3	chr1	55836782	55836982	+	798.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-94359.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	8.88	2.52	11.98	8.45	13.09	5.96	7.97	13.49	14.36	15.57	25.63	7.21
Merged-chr2-93470387-3	chr2	93470296	93470496	+	798.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040532)	TTS (NR_040532)	-7446.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.27	8.55	5.13	10.05	10.23	15.05	7.64	10.4	4.92	15.06	14.07	6.27
Merged-chr8-117121464-3	chr8	117121375	117121575	+	798.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021486, intron 7 of 10)	intron (NM_021486, intron 7 of 10)	25610.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	8.48	9.06	6.28	6.84	11.86	12.23	9.63	11.72	9.83	17.57	17.59	12.53
Merged-chr2-166674853-1	chr2	166674753	166674953	+	798.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	38979.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.25	2.52	6.85	10.05	11.86	7.84	10.3	9.14	7.28	7.03	12.06	4.7
Merged-chr7-90035248-2	chr7	90035153	90035353	+	798.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	6094.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.25	12.83	10.27	9.65	9.0	6.27	5.98	10.85	9.24	6.03	3.52	4.39
Merged-chr3-121104995-2	chr3	121104895	121105095	+	798.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66700.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	8.88	2.77	4.56	6.03	8.59	4.7	13.62	16.18	10.62	6.03	16.58	10.02
Merged-chr2-152346933-2	chr2	152346860	152347060	+	798.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033505, intron 1 of 4)	MER113|DNA|hAT-Charlie	1291.0	NR_033505	791417.0	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	-	predicted gene 14164	ncRNA	11.71	5.28	1.71	8.04	2.45	2.51	9.3	14.47	5.51	4.02	8.54	13.47
Merged-chr18-12102310-2	chr18	12102220	12102420	+	798.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178801, intron 4 of 14)	intron (NM_178801, intron 4 of 14)	19217.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	8.08	4.02	10.27	3.62	15.55	14.42	12.62	9.87	9.64	12.55	9.55	13.47
Merged-chr16-92823589-3	chr16	92823496	92823696	+	798.14679	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	2478.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	9.69	7.8	5.7	8.85	18.41	9.72	8.97	12.84	14.75	11.55	9.04	8.14
Merged-chr1-183803547-3	chr1	183803453	183803653	+	798.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	54576.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	19.79	7.55	9.13	19.31	7.36	13.17	6.98	19.54	32.06	13.56	38.69	22.56
Merged-chr7-139974542-2	chr7	139974440	139974640	+	798.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347613, intron 5 of 5)	intron (NM_001347613, intron 5 of 5)	4215.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	7.27	9.56	13.12	10.46	18.0	12.23	14.95	18.28	4.72	4.02	12.56	6.58
Merged-chr9-54578556-2	chr9	54578453	54578653	+	798.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-7958.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	8.08	5.28	12.55	12.07	19.64	15.05	10.63	19.82	6.29	8.03	7.54	13.47
Merged-chr15-9774945-2	chr15	9774838	9775038	+	798.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-26070.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	2.42	6.54	4.56	12.07	8.59	14.11	5.65	9.31	14.75	14.56	11.56	7.83
Merged-chr14-27237905-3	chr14	27237785	27237985	+	798.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027871)	promoter-TSS (NM_027871)	-125.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.86	6.79	13.12	12.47	12.27	10.03	6.64	7.43	6.1	6.03	9.55	8.14
Merged-chr10-67483615-3	chr10	67483522	67483722	+	798.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54247.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	11.31	9.31	11.41	4.42	10.23	10.66	7.97	12.39	14.36	9.54	11.56	11.28
Merged-chr16-65128043-3	chr16	65127952	65128152	+	798.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22268.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	9.69	9.06	2.28	14.48	8.18	8.15	8.64	14.8	25.37	14.56	18.09	9.4
Merged-chr8-123343611-3	chr8	123343495	123343695	+	798.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	10882.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	4.04	7.04	18.25	4.42	12.68	28.54	7.64	14.47	11.01	19.08	18.59	12.22
Merged-chr10-80260466-1	chr10	80260366	80260566	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	546.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	5.65	5.79	0.0	4.83	4.91	9.09	1.33	5.69	4.72	5.52	3.52	5.64
Merged-chr5-27185110-3	chr5	27185012	27185212	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-76823.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	7.67	5.03	13.69	8.85	21.68	11.29	18.6	26.66	5.31	4.02	18.09	7.83
Merged-chr15-96197539-1	chr15	96197439	96197639	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040423, intron 1 of 5)	intron (NR_040423, intron 1 of 5)	435.0	NR_040423	70040.0	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0.0	0.5	0.0	0.0	1.64	7.21	4.98	16.29	1.18	0.0	8.04	2.82
Merged-chr17-50189061-1	chr17	50188961	50189161	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1436.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.02	3.77	12.55	0.8	2.45	4.7	8.64	8.78	6.69	1.51	7.03	10.65
Merged-chr3-82030518-1	chr3	82030418	82030618	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33596.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.81	2.26	1.14	1.21	2.45	7.21	6.64	9.67	3.93	3.01	8.54	6.58
Merged-chr8-48011874-1	chr8	48011774	48011974	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-21323.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	2.42	2.26	1.14	4.83	4.09	7.21	10.3	8.94	4.13	6.03	6.03	4.7
Merged-chrX-77801768-2	chrX	77801670	77801870	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5810.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	5.65	6.79	6.28	4.02	7.36	4.39	5.31	7.96	18.29	1.0	12.56	4.7
Merged-chr12-99640402-3	chr12	99640293	99640493	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12419.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	10.09	13.08	7.42	8.45	11.05	5.33	8.3	10.15	12.59	14.06	13.06	16.29
Merged-chr2-129302736-1	chr2	129302636	129302836	+	798.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	5366.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0.4	4.53	3.42	4.42	2.05	6.9	4.98	0.84	12.0	11.55	4.52	3.45
Merged-chr4-144988522-1	chr4	144988422	144988622	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	95385.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.81	0.75	1.14	2.01	2.05	9.72	1.99	6.48	2.16	3.51	7.03	2.51
Merged-chr1-161556886-1	chr1	161556786	161556986	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62229.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.23	2.26	0.57	6.03	3.27	4.08	5.98	6.87	1.77	7.03	2.51	0.63
Merged-chr6-31124191-3	chr6	31124089	31124289	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-61096.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	7.67	8.3	16.54	4.83	17.18	21.01	8.97	13.63	15.14	8.03	15.58	5.33
Merged-chr1-191177883-1	chr1	191177783	191177983	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	Lx8|LINE|L1	5450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	1.62	5.03	3.42	4.83	7.36	8.78	1.33	0.76	2.75	2.01	3.01	2.82
Merged-chr8-69080488-1	chr8	69080388	69080588	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153054, intron 1 of 16)	L1MB2|LINE|L1	-8248.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.23	2.26	13.69	4.02	4.09	6.9	6.64	7.71	6.29	5.52	5.53	1.88
Merged-chr15-103305810-1	chr15	103305710	103305910	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4628.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	9.29	12.07	5.13	7.64	9.41	5.96	4.98	12.39	11.8	16.57	12.56	15.04
Merged-chr4-22358801-1	chr4	22358701	22358901	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172988, intron 1 of 8)	intron (NM_172988, intron 1 of 8)	1258.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	2.02	1.51	3.99	4.83	5.32	6.59	13.62	13.12	9.24	4.52	5.02	3.13
Merged-chr8-47370900-1	chr8	47370800	47371000	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18552.0	NM_175162	71069.0	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	4.85	1.51	0.57	1.21	6.95	3.45	2.66	9.03	2.36	5.52	0.0	2.51
Merged-chr10-118119807-1	chr10	118119707	118119907	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21980.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.02	1.51	1.14	1.61	1.64	2.2	6.98	6.93	4.33	2.01	4.02	3.45
Merged-chr1-14506614-2	chr1	14506494	14506694	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-196395.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	9.69	6.54	2.85	1.61	5.73	10.98	9.63	12.36	2.95	6.03	5.53	7.52
Merged-chr3-88502834-2	chr3	88502726	88502926	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001111102, exon 1 of 10)	exon (NM_001111102, exon 1 of 10)	526.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	6.46	9.06	2.85	9.25	13.09	8.15	11.29	4.82	8.06	14.56	9.55	10.65
Merged-chr1-91010820-1	chr1	91010720	91010920	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	12093.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	3.27	6.85	3.62	6.95	1.57	8.64	6.5	7.08	2.01	5.02	5.64
Merged-chr18-52690170-1	chr18	52690070	52690270	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3509.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	1.62	1.01	2.28	3.22	9.41	1.25	0.0	7.15	4.52	11.05	9.55	1.57
Merged-chr13-64129755-1	chr13	64129655	64129855	+	798.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-425.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	5.25	3.52	3.99	8.04	9.0	10.35	7.97	6.06	9.83	7.53	13.06	9.71
Merged-chr9-77834817-1	chr9	77834717	77834917	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80282.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.62	1.26	2.28	0.4	5.32	2.2	10.3	5.58	5.51	3.01	3.01	3.45
Merged-chr18-68195226-3	chr18	68195117	68195317	+	797.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	G-rich|Low_complexity|Low_complexity	-32729.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	10.5	3.52	6.28	11.66	17.18	19.76	9.3	7.09	17.11	22.09	22.11	9.71
Merged-chr7-75822534-3	chr7	75822446	75822646	+	797.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-25792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	14.13	6.29	11.98	14.88	6.55	10.35	5.31	12.98	10.62	6.03	5.02	9.71
Merged-chr16-21353807-3	chr16	21353705	21353905	+	797.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20449.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	17.36	8.05	9.13	16.89	12.27	19.76	5.31	13.46	11.8	14.06	12.56	14.72
Merged-chr13-83585481-3	chr13	83585374	83585574	+	797.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347576, intron 2 of 10)	intron (NM_001347576, intron 2 of 10)	11867.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	9.29	8.8	31.95	20.11	9.82	9.72	20.59	24.08	11.41	11.55	3.01	4.39
Merged-chr2-129601151-5	chr2	129601014	129601214	+	797.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	5652.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.65	6.04	8.56	8.04	11.86	12.23	12.62	10.49	7.67	8.54	15.58	9.4
Merged-chr1-195012738-3	chr1	195012644	195012844	+	797.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4655.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	14.94	7.55	12.55	4.42	12.27	17.25	12.62	9.81	18.1	19.08	12.56	8.14
Merged-chr11-62808166-3	chr11	62808058	62808258	+	797.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12095.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	16.96	19.62	24.53	14.88	11.45	6.59	8.3	9.7	10.03	13.56	14.07	2.19
Merged-chr6-124917930-3	chr6	124917795	124917995	+	797.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026988)	promoter-TSS (NM_026988)	51.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	17.77	14.84	8.56	4.42	10.64	5.96	7.31	4.26	6.49	6.03	12.56	7.83
Merged-chr6-72566194-3	chr6	72566101	72566301	+	797.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144917, exon 13 of 13)	3' UTR (NM_144917, exon 13 of 13)	16554.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	14.13	5.28	17.68	9.25	10.64	14.42	6.64	9.36	11.41	17.07	17.08	10.65
Merged-chr6-34876872-2	chr6	34876780	34876980	+	797.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135611, intron 1 of 3)	intron (NM_001135611, intron 1 of 3)	1185.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	11.71	5.79	2.28	10.46	13.09	6.59	13.62	9.67	4.72	3.01	9.04	4.07
Merged-chr10-67634016-2	chr10	67633938	67634138	+	797.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62079.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	6.06	2.77	1.14	0.8	3.68	13.17	3.65	7.26	19.08	7.53	18.09	15.35
Merged-chr1-134987718-2	chr1	134987609	134987809	+	797.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033409, exon 18 of 18)	exon (NM_001033409, exon 18 of 18)	25144.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.63	3.02	4.56	4.42	5.73	7.21	6.31	11.05	7.67	3.51	11.05	8.77
Merged-chr11-51857268-3	chr11	51857188	51857388	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 1 of 12)	CpG	193.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	7.27	10.82	7.42	15.28	9.0	5.33	9.63	12.22	11.6	12.05	13.06	12.22
Merged-chr4-11481892-3	chr4	11481795	11481995	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4063.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	14.13	11.57	25.67	22.93	9.41	9.72	7.97	12.48	8.65	4.52	19.6	5.95
Merged-chr8-26380861-1	chr8	26380761	26380961	+	797.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	222692.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	6.86	6.04	7.42	11.26	9.0	14.42	7.31	12.25	4.33	8.54	4.52	7.83
Merged-chr3-137879500-3	chr3	137879388	137879588	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	RSINE1|SINE|B4	11813.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	7.67	8.05	9.13	8.45	13.09	22.58	12.62	15.2	11.21	8.54	15.07	11.28
Merged-chr10-120140400-3	chr10	120140304	120140504	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27439.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	3.23	9.06	6.28	9.25	14.32	11.29	8.64	12.39	16.33	13.56	30.15	7.52
Merged-chr8-95713781-3	chr8	95713683	95713883	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-2130.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	11.71	18.11	5.13	11.66	4.09	10.35	3.32	7.46	14.75	13.05	9.55	6.89
Merged-chr4-102759316-1	chr4	102759216	102759416	+	797.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-819.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.85	8.8	5.7	9.25	6.95	9.09	8.64	8.92	5.51	7.03	9.55	4.7
Merged-chr11-115717987-3	chr11	115717935	115718135	+	797.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9438.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.86	13.33	9.7	8.04	3.68	6.27	2.99	5.05	5.7	5.02	5.53	4.07
Merged-chr13-21780418-3	chr13	21780298	21780498	+	797.777771	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020034, exon 1 of 1)	exon (NM_020034, exon 1 of 1)	227.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	8.08	6.29	5.13	4.02	5.73	8.47	4.32	9.59	7.28	10.04	13.06	12.84
Merged-chr13-24757982-3	chr13	24757886	24758086	+	797.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020567, intron 2 of 6)	intron (NM_020567, intron 2 of 6)	3951.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	9.69	9.31	9.7	5.23	16.77	15.05	8.3	10.15	15.14	13.05	20.1	10.96
Merged-chr14-66847315-1	chr14	66847215	66847415	+	797.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21285.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	7.67	5.79	7.99	2.41	22.91	11.92	7.31	5.75	7.67	2.01	8.04	3.13
Merged-chr15-78326529-2	chr15	78326426	78326626	+	797.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	536.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	11.71	7.29	10.84	4.42	5.32	14.11	6.31	2.83	14.36	11.05	5.02	8.46
Merged-chr16-17561355-2	chr16	17561269	17561469	+	797.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011028)	promoter-TSS (NM_011028)	-122.0	NM_001145435	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	8.48	11.82	8.56	8.04	19.64	24.46	16.28	19.57	5.7	3.01	2.01	2.82
Merged-chr7-140953347-2	chr7	140953266	140953466	+	797.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2595.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	4.04	7.8	3.42	2.01	7.36	6.59	3.99	9.42	12.19	15.06	10.55	10.34
Merged-chr2-13439093-2	chr2	13438995	13439195	+	797.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	52781.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	8.88	6.04	2.28	5.63	12.68	17.87	5.98	9.0	11.01	10.54	15.07	7.21
Merged-chr12-80213481-3	chr12	80213373	80213573	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	MIR3|SINE|MIR	46898.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	15.34	8.05	11.98	8.04	11.05	10.98	9.3	13.23	18.1	11.55	16.58	9.08
Merged-chr9-88436837-1	chr9	88436737	88436937	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	2114.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	6.86	6.54	0.57	4.42	9.41	15.05	1.33	6.42	4.52	14.06	8.04	7.21
Merged-chr4-8857618-1	chr4	8857518	8857718	+	797.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 31 of 36)	intron (NM_001355382, intron 31 of 36)	106294.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.4	0.5	1.14	3.22	0.0	0.63	1.33	1.77	9.24	20.59	29.65	16.29
Merged-chr2-90557173-3	chr2	90557160	90557360	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L1MC4a|LINE|L1	23387.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.08	3.27	0.0	1.61	1.23	7.21	1.33	1.26	5.7	15.06	5.53	3.45
Merged-chr5-66114755-3	chr5	66114659	66114859	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16580.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.69	7.8	10.27	0.0	9.0	15.68	5.31	5.69	17.7	19.08	10.55	5.95
Merged-chr10-117304555-1	chr10	117304455	117304655	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	3.63	4.02	4.56	3.62	11.45	10.35	7.64	10.29	2.75	4.02	6.03	7.52
Merged-chr4-72168680-1	chr4	72168580	72168780	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	32213.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	5.65	4.78	4.56	2.41	2.86	7.21	8.64	9.36	3.93	2.01	5.53	3.45
Merged-chr5-105416334-3	chr5	105416237	105416437	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033550, intron 1 of 4)	intron (NM_001033550, intron 1 of 4)	562.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	4.04	6.79	5.13	2.82	9.0	4.7	1.33	6.64	8.26	9.54	4.02	5.01
Merged-chr13-99438019-1	chr13	99437919	99438119	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008634, intron 4 of 6)	L3|LINE|CR1	-25193.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	7.27	3.02	5.13	7.24	12.27	8.78	6.64	10.49	0.0	0.5	2.51	3.76
Merged-chr4-59199531-2	chr4	59199434	59199634	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	9984.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.63	5.79	12.55	1.61	6.55	11.92	6.31	8.69	13.18	11.05	17.59	4.07
Merged-chr1-149959912-2	chr1	149959827	149960027	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1363.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.63	3.52	6.28	9.65	4.91	8.47	5.31	8.13	11.41	3.51	13.57	1.57
Merged-chr7-64409041-2	chr7	64408958	64409158	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	16436.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	2.02	3.52	13.12	4.83	9.0	5.64	12.62	10.96	8.06	3.01	11.56	8.77
Merged-chr7-113523115-2	chr7	113523019	113523219	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	MER103C|DNA|hAT-Charlie	9285.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	7.27	7.04	9.7	2.01	6.55	9.09	14.28	8.44	15.74	11.55	10.55	10.02
Merged-chr9-63614749-3	chr9	63614642	63614842	+	797.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	12096.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	6.06	10.82	6.85	8.85	18.0	12.86	3.32	14.1	8.06	14.06	15.07	13.47
Merged-chr6-135362749-1	chr6	135362649	135362849	+	797.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010128)	promoter-TSS (NM_010128)	-182.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	1.21	0.5	1.71	7.64	11.05	8.47	8.64	19.46	2.75	0.0	3.01	1.57
Merged-chr1-152528400-2	chr1	152528295	152528495	+	797.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346119, exon 15 of 18)	exon (NM_001346119, exon 15 of 18)	96822.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.85	5.53	10.27	6.03	7.36	10.35	5.98	10.74	10.03	9.04	7.03	8.14
Merged-chr3-79566823-3	chr3	79566736	79566936	+	797.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	843.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	7.67	7.55	5.13	6.84	9.41	15.99	14.28	17.94	15.34	12.55	16.08	12.84
Merged-chr4-120016899-3	chr4	120016794	120016994	+	797.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-144312.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	10.09	6.79	17.68	9.25	11.86	10.66	7.97	13.37	16.13	13.05	20.1	10.02
Merged-chr4-132261089-3	chr4	132261002	132261202	+	797.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122992, intron 1 of 10)	CpG	447.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	13.33	13.08	10.27	8.85	8.59	10.35	12.29	5.44	12.59	4.02	20.1	8.77
Merged-chr3-139049020-3	chr3	139048900	139049100	+	797.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	26201.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	19.79	7.04	11.41	10.05	6.95	11.29	9.3	11.72	9.44	8.03	9.04	4.07
Merged-chr17-36161335-2	chr17	36161236	36161436	+	797.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	7201.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.4	7.36	10.35	9.3	11.13	16.92	11.55	14.57	7.52
Merged-chr3-88325034-3	chr3	88324927	88325127	+	797.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020003)	promoter-TSS (NM_020003)	4.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	8.08	9.06	12.55	7.64	13.5	10.66	4.98	12.06	16.92	9.54	12.56	16.29
Merged-chr16-23181775-2	chr16	23181670	23181870	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155420, intron 1 of 2)	intron (NR_155420, intron 1 of 2)	6490.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	4.85	3.77	1.14	21.32	14.73	21.32	12.95	12.76	8.85	10.04	4.02	6.27
Merged-chr7-95853657-1	chr7	95853557	95853757	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-317587.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.81	1.26	0.0	0.0	3.27	4.7	7.31	10.51	6.69	10.54	3.01	3.45
Merged-chr1-160293633-2	chr1	160293529	160293729	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	2343.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.0	8.05	3.42	10.05	18.82	19.44	16.28	25.82	4.13	4.02	4.02	3.45
Merged-chr11-106131968-2	chr11	106131858	106132058	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	27969.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	4.44	7.04	10.27	8.45	16.36	14.42	8.97	9.79	8.06	12.05	7.03	10.65
Merged-chr11-116531771-3	chr11	116531653	116531853	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172475)	promoter-TSS (NM_001172475)	-158.0	NM_001172475	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	10.9	12.07	6.28	2.82	5.73	15.37	7.31	5.64	8.46	6.53	5.53	13.78
Merged-chr9-65205601-1	chr9	65205501	65205701	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9089.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	6.06	2.52	3.42	3.62	6.14	3.45	6.98	8.97	4.92	2.01	4.02	4.07
Merged-chrX-140457747-1	chrX	140457647	140457847	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021463, intron 1 of 6)	intron (NM_021463, intron 1 of 6)	1144.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	4.44	4.02	9.13	8.45	2.86	5.64	6.64	8.41	5.9	2.01	10.05	4.39
Merged-chr5-91139605-2	chr5	91139506	91139706	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009704)	promoter-TSS (NM_009704)	7.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	10.5	8.55	6.28	14.88	6.95	22.58	20.59	9.2	4.52	6.53	7.03	5.33
Merged-chr9-58630634-2	chr9	58630526	58630726	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357751, intron 4 of 8)	intron (NM_001357751, intron 4 of 8)	48386.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	6.46	4.53	4.56	7.24	19.23	6.27	13.95	12.14	11.41	16.57	8.04	9.71
Merged-chr8-34765091-3	chr8	34764990	34765190	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42520.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.85	9.81	7.99	8.04	6.55	3.76	7.97	8.3	15.93	7.03	14.57	10.34
Merged-chr13-73458799-2	chr13	73458736	73458936	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8547.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.44	7.8	2.85	11.26	4.5	2.51	6.64	11.75	4.13	3.01	5.02	9.71
Merged-chr8-39427458-2	chr8	39427359	39427559	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129479.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.63	8.05	9.7	9.65	25.77	15.37	11.29	23.36	0.0	4.02	0.0	0.0
Merged-chr13-94159684-2	chr13	94159588	94159788	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101892.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	6.46	4.28	11.98	14.08	28.23	11.29	7.97	8.44	12.98	2.01	17.59	3.76
Merged-chr4-119331562-2	chr4	119331451	119331651	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001270435, exon 12 of 15)	exon (NM_001270435, exon 12 of 15)	-11028.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	6.86	4.02	5.13	16.09	3.27	11.92	4.32	11.02	8.26	10.54	23.62	4.39
Merged-chr6-87730807-3	chr6	87730737	87730937	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159697)	promoter-TSS (NM_001159697)	-32.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	12.52	16.1	13.12	7.64	14.32	12.54	14.95	16.18	11.8	8.03	6.53	3.76
Merged-chr2-173356197-1	chr2	173356097	173356297	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79664.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	1.21	7.77	8.15	3.65	8.92	8.06	3.01	3.52	1.57
Merged-chr18-8370492-2	chr18	8370406	8370606	+	797.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	500793.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	10.9	5.03	6.85	6.03	13.91	9.09	7.97	13.99	13.77	8.54	16.58	9.71
Merged-chr1-36614756-2	chr1	36614658	36614858	+	797.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	MTD|LTR|ERVL-MaLR	-21426.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	13.73	8.8	11.98	18.5	8.59	8.78	8.64	11.83	6.88	8.03	15.58	4.07
Merged-chr6-83010196-3	chr6	83010100	83010300	+	797.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	RMER6B|LTR|ERVK	23271.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	10.5	6.04	7.42	9.25	9.41	11.29	3.65	10.09	13.77	3.01	11.05	3.13
Merged-chr14-56689917-3	chr14	56689819	56690019	+	797.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11081.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	8.08	5.28	11.98	9.25	5.73	13.48	5.31	14.58	12.78	8.54	15.07	8.46
Merged-chr9-86631322-3	chr9	86631219	86631419	+	797.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	55958.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	12.92	8.55	2.28	11.26	8.59	10.98	8.64	14.69	17.31	9.04	21.1	10.65
Merged-chr6-82781098-3	chr6	82780963	82781163	+	797.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6609.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.67	7.55	9.13	6.44	9.0	18.5	8.3	9.34	12.39	8.03	7.03	4.07
Merged-chr7-114193849-2	chr7	114193757	114193957	+	797.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60823.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	3.23	6.29	2.28	5.23	11.45	8.15	4.98	10.71	11.01	4.52	12.56	4.39
Merged-chr3-38013114-3	chr3	38012939	38013139	+	797.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114226.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.23	5.79	6.28	5.63	6.55	8.78	9.97	5.78	6.29	6.03	10.05	4.39
Merged-chr6-38807168-2	chr6	38806982	38807182	+	797.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	MIRb|SINE|MIR	30229.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.23	2.26	2.85	2.82	10.64	4.39	7.64	11.55	1.38	1.0	3.52	2.51
Merged-chrX-38581308-1	chrX	38581208	38581408	+	797.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5112.0	NM_001110142	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	3.23	3.02	3.99	5.63	8.59	4.39	4.98	6.95	9.64	5.52	7.03	2.51
Merged-chr16-64941981-3	chr16	64941903	64942103	+	797.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008310, intron 2 of 2)	RLTR14|LTR|ERV1	90002.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.23	6.79	7.99	3.62	7.36	17.25	5.98	6.79	49.37	41.67	40.2	12.53
Merged-chr3-146030382-3	chr3	146030282	146030482	+	797.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42512.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	18.17	11.32	15.4	8.85	5.73	21.32	14.28	11.94	8.26	12.05	13.57	7.83
Merged-chr4-47398413-3	chr4	47398309	47398509	+	797.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	12193.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	9.69	8.05	10.84	12.87	10.64	4.08	6.31	17.72	14.95	6.53	14.57	8.14
Merged-chr1-154112653-1	chr1	154112553	154112753	+	797.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-88534.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.4	2.77	9.13	6.84	8.18	5.96	4.98	9.31	4.13	5.02	0.0	1.88
Merged-chrX-142361300-3	chrX	142361204	142361404	+	797.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	29231.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	12.52	5.28	14.83	11.66	16.77	10.35	25.58	29.36	12.19	11.05	11.05	7.83
Merged-chr6-134414192-3	chr6	134414211	134414411	+	797.301575	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355686)	promoter-TSS (NM_001355686)	-117.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.04	9.56	9.13	4.42	2.05	8.78	10.96	6.56	6.69	10.04	8.04	1.57
Merged-chr8-25603525-3	chr8	25603500	25603700	+	797.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	1316.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.23	4.28	10.27	7.64	10.23	4.08	8.97	10.15	13.37	8.03	13.57	8.77
Merged-chr19-46137317-3	chr19	46137212	46137412	+	797.294434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008852, intron 2 of 3)	intron (NM_008852, intron 2 of 3)	5413.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	10.09	15.34	13.69	13.27	5.73	13.48	10.96	11.47	13.96	5.02	14.57	9.08
Merged-chr7-53608377-2	chr7	53608279	53608479	+	797.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26|LTR|ERVK	283510.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.81	1.76	0.0	1.21	8.59	7.21	7.97	22.51	11.21	10.04	18.09	10.34
Merged-chr6-134205313-3	chr6	134205214	134205414	+	797.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	169614.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.09	11.82	7.42	16.89	18.0	12.54	11.63	19.46	8.06	8.54	13.06	6.27
Merged-chr2-28464129-3	chr2	28464013	28464213	+	797.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027040, intron 2 of 2)	intron (NM_027040, intron 2 of 2)	2211.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	14.13	8.05	7.42	10.05	3.27	11.92	3.99	6.28	15.54	10.04	3.01	8.77
Merged-chr6-83137726-3	chr6	83137616	83137816	+	797.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133641, exon 1 of 12)	5' UTR (NM_133641, exon 1 of 12)	632.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	9.69	11.82	20.54	11.66	12.27	17.56	14.62	18.87	8.65	8.54	12.06	3.76
Merged-chr19-46488721-1	chr19	46488621	46488821	+	797.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_015752)	TTS (NM_015752)	-12927.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	2.42	1.01	9.13	2.41	11.86	6.9	6.98	8.92	12.59	6.03	1.51	5.33
Merged-chr5-65937353-2	chr5	65937327	65937527	+	797.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29697.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	5.65	4.78	5.7	5.63	2.45	3.14	4.32	1.74	4.33	3.51	5.53	2.19
Merged-chr7-19849776-2	chr7	19849647	19849847	+	797.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2256.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	15.75	7.29	0.0	1.61	8.18	9.72	4.32	7.6	11.6	12.05	6.03	7.52
Merged-chr10-40882345-3	chr10	40882294	40882494	+	797.226196	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	749.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	8.48	4.02	4.56	10.05	7.77	7.84	7.97	6.56	8.65	4.52	7.54	5.95
Merged-chr9-108344415-3	chr9	108344333	108344533	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3398.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	8.88	6.79	7.42	2.01	5.32	8.47	4.98	3.11	4.72	6.53	6.03	5.64
Merged-chr17-64602900-2	chr17	64602802	64603002	+	797.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1253.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.27	1.51	5.13	7.24	12.27	10.98	8.64	15.34	13.57	7.03	10.05	9.4
Merged-chr15-90654424-1	chr15	90654324	90654524	+	797.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	24964.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	2.42	3.02	0.0	2.41	5.73	9.72	10.96	8.55	1.97	0.0	1.0	1.88
Merged-chr17-29416541-2	chr17	29416459	29416659	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55645.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.08	10.31	16.54	7.24	2.05	5.02	1.99	10.21	15.74	8.54	19.09	9.4
Merged-chr14-21941731-3	chr14	21941655	21941855	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	47846.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	11.31	4.02	7.99	10.86	10.23	15.68	6.98	12.22	13.57	3.51	8.04	7.83
Merged-chr15-76312481-1	chr15	76312381	76312581	+	797.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5236.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	4.44	5.79	11.41	5.63	8.18	10.66	8.3	7.79	12.0	5.52	8.54	6.58
Merged-chr13-30633258-3	chr13	30633164	30633364	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18221.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	7.67	9.81	6.85	11.66	16.36	7.53	10.63	12.5	15.93	16.57	11.05	9.71
Merged-chr4-125144401-3	chr4	125144304	125144504	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16523.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	10.5	7.04	15.97	10.46	9.82	15.37	3.99	15.2	18.69	16.07	17.59	8.46
Merged-chr11-32238625-2	chr11	32238532	32238732	+	797.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284359, intron 9 of 13)	intron (NM_001284359, intron 9 of 13)	12127.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	6.06	5.03	13.69	4.83	4.5	6.27	6.98	8.33	15.54	9.54	17.59	9.4
Merged-chr8-11475328-2	chr8	11475211	11475411	+	797.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2618.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.63	5.03	3.99	4.42	2.05	13.8	10.96	13.74	9.64	4.02	9.55	2.19
Merged-chr6-99028951-3	chr6	99028840	99029040	+	797.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-642.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	16.56	7.29	10.84	8.45	5.73	13.8	6.31	9.36	10.23	9.04	10.05	6.89
Merged-chr9-64091332-2	chr9	64091225	64091425	+	797.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	10564.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	4.04	4.28	6.28	6.44	9.82	7.21	12.29	17.89	10.03	6.53	13.57	5.01
Merged-chr12-102320090-2	chr12	102319973	102320173	+	797.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	36432.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	15.75	5.03	6.28	11.66	7.77	4.08	14.28	10.99	12.19	6.53	7.03	6.27
Merged-chr6-116228985-3	chr6	116228927	116229127	+	797.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	20994.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	8.48	5.28	14.83	8.04	15.14	12.86	1.66	12.11	10.03	13.05	17.59	8.46
Merged-chr17-35000358-3	chr17	35000234	35000434	+	797.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011690)	promoter-TSS (NM_011690)	412.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	8.88	15.34	9.13	3.62	20.86	16.62	5.98	4.37	11.21	10.54	4.52	8.14
Merged-chr17-42875747-3	chr17	42875635	42875835	+	797.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	689.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.67	3.77	8.56	6.03	9.41	11.92	11.96	2.19	16.92	14.56	16.08	6.58
Merged-chr11-76495477-3	chr11	76495380	76495580	+	797.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-985.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	23.82	7.55	7.99	8.45	17.59	15.37	3.99	10.23	10.42	13.05	8.04	12.53
Merged-chr2-117842494-3	chr2	117842375	117842575	+	797.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	20547.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	12.92	5.79	6.28	8.45	8.18	7.84	2.99	9.36	15.54	17.07	9.55	13.16
Merged-chr11-47221700-3	chr11	47221593	47221793	+	797.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	157609.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	3.23	7.29	11.41	5.63	13.91	17.56	10.96	15.59	13.37	11.05	15.07	7.52
Merged-chr8-25200657-3	chr8	25200536	25200736	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177089, intron 1 of 12)	intron (NM_177089, intron 1 of 12)	906.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	10.9	4.53	3.42	2.82	2.45	4.08	2.99	4.29	3.74	10.04	3.01	5.33
Merged-chr15-68428573-1	chr15	68428473	68428673	+	797.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87284.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	7.27	4.53	5.13	0.0	1.64	2.51	1.99	1.15	12.39	12.05	9.04	10.65
Merged-chr5-125334795-1	chr5	125334695	125334895	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	6299.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.63	3.02	2.28	6.44	6.14	9.09	8.97	5.75	1.77	2.51	0.5	1.25
Merged-chr11-117090180-1	chr11	117090080	117090280	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12832.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	2.42	4.28	1.71	1.61	1.23	4.08	5.98	6.03	6.69	7.03	5.53	6.27
Merged-chr11-118015572-1	chr11	118015472	118015672	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151726, intron 8 of 9)	intron (NR_151726, intron 8 of 9)	13302.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	9.69	5.28	3.42	6.44	7.77	10.66	2.66	6.9	5.11	0.5	9.55	3.45
Merged-chr1-34236515-2	chr1	34236401	34236601	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 60 of 102)	intron (NM_001276764, intron 60 of 102)	76171.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	7.67	3.02	3.99	2.41	6.14	11.6	7.64	8.47	9.24	7.53	5.53	7.83
Merged-chr12-41494870-2	chr12	41494766	41494966	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-8809.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	9.69	5.03	4.56	6.44	7.77	7.21	10.96	17.92	4.13	1.0	3.01	9.71
Merged-chr4-109564987-1	chr4	109564887	109565087	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-33690.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	3.63	5.03	1.14	3.22	0.82	4.08	4.98	7.4	4.92	7.03	6.03	5.33
Merged-chr10-8754318-2	chr10	8754242	8754442	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	131728.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.81	2.01	3.42	4.02	4.5	5.96	1.33	4.01	13.96	18.08	7.54	4.39
Merged-chr8-117361666-1	chr8	117361566	117361766	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12496.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.65	4.53	3.42	4.42	5.73	10.03	2.99	6.06	7.87	5.02	5.53	3.13
Merged-chr4-35138233-1	chr4	35138133	35138333	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-13822.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	2.42	3.52	3.99	3.62	2.05	0.94	7.31	4.79	6.1	0.5	7.03	3.45
Merged-chr2-154594100-2	chr2	154594004	154594204	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	9569.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.4	0.0	1.14	1.21	9.0	1.57	9.97	6.64	7.08	4.52	11.05	9.4
Merged-chr6-114872953-1	chr6	114872853	114873053	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	48868.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.04	0.5	2.28	0.0	8.59	2.51	2.33	6.0	5.7	2.01	4.02	6.58
Merged-chr14-55698247-1	chr14	55698147	55698347	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14841.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	5.65	3.77	8.56	7.64	5.32	10.03	4.65	8.02	7.47	2.51	4.02	10.02
Merged-chr10-4787211-1	chr10	4787111	4787311	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302531, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	77053.0	NM_001302533	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	4.04	2.52	3.99	7.24	2.05	3.14	5.31	7.12	2.75	2.01	15.07	3.76
Merged-chr16-36821702-2	chr16	36821607	36821807	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	6552.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	7.67	2.52	13.12	8.85	4.5	7.21	6.64	8.07	11.21	7.03	10.55	5.64
Merged-chr13-58012315-1	chr13	58012215	58012415	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 14 of 16)	intron (NM_001195075, intron 14 of 16)	10885.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	5.65	4.53	5.7	2.82	2.86	5.33	6.31	6.28	13.96	4.52	2.01	3.45
Merged-chrX-9662537-1	chrX	9662437	9662637	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025975, intron 1 of 4)	intron (NM_025975, intron 1 of 4)	446.0	NM_025975	67117.0	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	5.25	3.77	4.56	5.63	0.41	7.84	5.98	7.26	7.28	7.03	10.05	6.27
Merged-chr11-54427774-1	chr11	54427674	54427874	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029105)	TTS (NM_029105)	-10405.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	17.77	5.03	7.99	4.83	8.59	9.09	3.65	10.68	9.24	2.51	3.01	3.13
Merged-chr18-32818203-2	chr18	32818117	32818317	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1357.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	6.06	2.26	2.85	4.42	3.68	4.7	2.33	4.37	8.85	4.02	19.09	4.7
Merged-chr6-96116298-1	chr6	96116198	96116398	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3144.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.4	0.5	1.71	0.0	5.32	5.33	1.66	3.64	3.93	1.51	2.01	1.25
Merged-chr6-40454644-1	chr6	40454544	40454744	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201370, intron 4 of 11)	intron (NM_201370, intron 4 of 11)	11781.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	6.86	1.51	3.42	4.02	1.64	3.76	7.31	6.06	4.52	4.02	5.53	5.95
Merged-chr18-39635031-2	chr18	39634899	39635099	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-138498.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.23	2.52	5.7	3.22	13.09	12.23	8.3	10.77	11.01	9.54	13.57	7.52
Merged-chrX-57310560-1	chrX	57310460	57310660	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	16041.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	2.02	0.5	1.14	1.61	8.18	2.2	7.31	8.69	2.56	2.01	7.54	5.01
Merged-chrX-38601154-3	chrX	38601007	38601207	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356360)	promoter-TSS (NM_001356360)	-152.0	NM_001361382	68995.0	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	7.27	8.05	7.99	10.05	6.55	9.41	8.97	15.7	15.14	8.54	18.09	7.52
Merged-chr3-108458862-1	chr3	108458762	108458962	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358064, intron 21 of 21)	intron (NM_001358064, intron 21 of 21)	-13603.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.81	3.02	0.0	5.23	2.86	1.88	0.66	3.17	1.77	5.02	2.01	3.13
Merged-chr2-169089282-1	chr2	169089182	169089382	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	111013.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	5.25	5.53	6.85	2.82	4.09	6.59	3.32	9.2	1.97	3.51	4.02	5.64
Merged-chr4-148042232-1	chr4	148042132	148042332	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027809, intron 2 of 12)	intron (NR_027809, intron 2 of 12)	1043.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	1.62	3.52	4.56	2.01	9.41	8.15	9.97	7.93	9.05	6.03	5.02	8.46
Merged-chr9-85272146-1	chr9	85272046	85272246	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	54978.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.42	1.51	0.0	2.41	12.68	10.98	2.66	2.75	0.98	2.51	0.0	0.31
Merged-chr12-40216491-1	chr12	40216391	40216591	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013562, intron 3 of 11)	intron (NM_013562, intron 3 of 11)	6320.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	10.5	7.8	4.56	1.21	4.5	10.66	2.99	3.28	5.31	5.52	2.51	2.19
Merged-chr4-40018372-1	chr4	40018272	40018472	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124893.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	1.62	0.5	1.14	2.01	3.68	2.82	4.98	8.33	1.38	2.01	0.5	1.88
Merged-chr12-51835334-1	chr12	51835234	51835434	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5798.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.48	3.52	3.99	2.41	12.68	4.39	4.65	7.43	1.38	1.51	4.02	2.51
Merged-chr8-83859766-1	chr8	83859666	83859866	+	797.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40332.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.83	8.3	0.0	2.82	0.0	0.0	0.0	1.23	15.74	12.55	15.07	5.95
Merged-chr10-24191593-1	chr10	24191493	24191693	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31924.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	2.83	4.53	4.56	4.02	4.91	1.25	5.31	6.9	2.36	3.01	2.51	4.7
Merged-chr5-108634220-1	chr5	108634120	108634320	+	797.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	4410.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	5.65	9.06	7.99	5.23	6.55	6.9	6.31	3.79	11.41	15.06	6.03	11.28
Merged-chr7-120201419-1	chr7	120201319	120201519	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016669, intron 1 of 7)	intron (NM_016669, intron 1 of 7)	569.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.0	0.0	0.0	2.82	7.36	5.33	2.66	9.2	2.75	1.0	4.02	4.7
Merged-chr1-138972675-3	chr1	138972519	138972719	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4898.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	8.48	3.77	4.56	10.46	4.5	10.35	10.3	12.64	7.67	6.53	8.04	8.77
Merged-chr6-121272134-2	chr6	121272051	121272251	+	796.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	26245.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	4.44	1.51	4.56	3.62	10.64	7.53	5.65	6.14	17.9	20.59	17.59	7.83
Merged-chr18-65583967-3	chr18	65583877	65584077	+	796.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	776.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	9.69	6.29	17.68	18.9	13.91	10.98	19.6	32.61	8.65	3.01	19.09	9.71
Merged-chr4-40868945-3	chr4	40868826	40869026	+	796.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-14389.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	10.09	4.02	14.26	10.05	6.14	4.08	17.61	19.29	10.62	0.0	11.56	16.92
Merged-chr10-95779990-3	chr10	95779871	95780071	+	796.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160692.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	2.42	5.53	6.28	4.42	2.86	4.39	7.31	12.64	2.75	10.04	8.54	4.39
Merged-chr2-102885537-2	chr2	102885442	102885642	+	796.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	16123.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.62	5.03	1.14	1.61	9.82	13.17	10.96	17.5	12.0	9.04	15.07	5.95
Merged-chr4-137883898-3	chr4	137883788	137883988	+	796.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	21651.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.42	11.07	9.13	9.25	6.95	10.35	10.63	11.55	17.7	8.03	15.58	10.34
Merged-chr8-111539960-3	chr8	111539848	111540048	+	796.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	MIRc|SINE|MIR	1605.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	9.29	8.55	11.98	21.72	13.91	8.47	20.59	16.07	13.77	7.03	12.56	4.39
Merged-chr9-70009060-3	chr9	70008940	70009140	+	796.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-3508.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	16.56	9.56	15.4	14.08	6.95	14.42	7.97	14.92	15.34	10.04	14.57	3.45
Merged-chr1-193897032-3	chr1	193896937	193897137	+	796.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	325722.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	8.88	3.52	7.42	11.26	18.41	11.92	8.64	15.08	15.93	17.57	14.07	18.17
Merged-chr1-156624401-3	chr1	156624308	156624508	+	796.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 3 of 12)	intron (NM_001136104, intron 3 of 12)	49931.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	6.06	6.54	5.13	11.26	18.82	10.35	2.33	8.13	17.31	20.59	10.55	10.02
Merged-chr16-20412771-3	chr16	20412632	20412832	+	796.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	13662.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	7.67	10.56	8.56	2.01	10.23	21.01	7.64	14.83	18.29	24.1	12.06	12.53
Merged-chr19-56742226-3	chr19	56742129	56742329	+	796.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19857.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	15.75	11.07	9.7	4.42	4.5	13.48	12.29	8.78	11.21	8.54	5.02	6.58
Merged-chr3-59342251-2	chr3	59342153	59342353	+	796.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162884, intron 1 of 6)	L1MA4A|LINE|L1	2003.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.44	5.03	7.99	5.63	11.45	17.56	12.29	12.14	11.8	15.06	14.57	5.01
Merged-chr4-35158029-2	chr4	35157933	35158133	+	796.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	-549.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	9.69	4.02	1.14	7.24	9.0	17.56	9.97	14.78	11.21	6.03	13.06	7.83
Merged-chr18-88861723-2	chr18	88861632	88861832	+	796.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32475.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.65	8.05	2.28	7.24	18.41	8.15	11.29	14.75	4.72	11.55	13.06	8.77
Merged-chr15-98089972-3	chr15	98089855	98090055	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144851, intron 1 of 17)	B2_Mm2|SINE|B2	-2634.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	13.73	9.31	12.55	11.66	13.5	10.35	2.66	2.21	13.77	19.08	9.04	11.59
Merged-chr10-44004408-3	chr10	44004335	44004535	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172393, exon 1 of 20)	5' UTR (NM_172393, exon 1 of 20)	411.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	9.29	10.06	6.85	6.84	5.32	10.03	10.96	2.13	5.7	9.04	19.6	9.4
Merged-chr2-35449876-3	chr2	35449778	35449978	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11571.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	18.98	11.82	15.97	30.97	8.18	6.59	13.29	17.33	5.11	3.01	10.05	6.89
Merged-chr13-21493060-1	chr13	21492960	21493160	+	796.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13464.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	3.23	4.53	3.42	4.42	12.68	7.84	7.64	8.69	4.52	9.54	19.09	7.83
Merged-chr17-27242655-3	chr17	27242555	27242755	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5411.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	12.52	6.54	11.98	4.83	13.91	11.92	15.94	19.09	9.83	3.51	5.53	9.08
Merged-chr11-31852117-1	chr11	31852017	31852217	+	796.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18823.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.23	6.04	5.7	4.02	8.59	7.53	4.98	8.36	5.11	0.0	2.01	3.45
Merged-chr13-23450621-3	chr13	23450510	23450710	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15291.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	18.17	12.07	17.68	18.1	9.41	16.93	13.95	10.82	10.23	7.53	7.03	11.9
Merged-chr7-109631357-3	chr7	109631270	109631470	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14223.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	4.44	5.79	14.83	14.08	5.32	9.72	2.99	7.01	11.21	3.51	11.56	8.77
Merged-chr18-90601991-3	chr18	90601876	90602076	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	22151.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	7.27	8.05	3.42	0.8	6.14	10.98	4.32	4.57	24.59	13.56	4.52	10.65
Merged-chr18-62044282-3	chr18	62044193	62044393	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	91218.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	10.5	6.29	9.13	12.07	7.77	5.02	8.3	9.59	12.19	7.03	13.57	14.72
Merged-chr14-86847549-1	chr14	86847449	86847649	+	796.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 22 of 27)	MLT1B|LTR|ERVL-MaLR	293675.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	5.25	6.79	3.99	12.07	6.14	10.35	9.3	10.12	0.39	0.0	0.5	0.63
Merged-chr9-32590099-2	chr9	32590022	32590222	+	796.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48670.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	8.08	5.03	3.42	3.22	8.59	12.23	2.99	8.02	10.03	16.57	9.55	10.02
Merged-chr11-11658995-3	chr11	11658925	11659125	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26900.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	10.5	3.02	8.56	16.09	6.14	1.88	12.62	13.68	11.8	4.02	16.58	8.77
Merged-chr2-136892883-3	chr2	136892782	136892982	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028834, intron 1 of 7)	intron (NM_028834, intron 1 of 7)	714.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	14.94	4.28	8.56	5.63	18.82	8.47	14.62	14.13	13.96	7.53	13.57	9.08
Merged-chr4-139579614-3	chr4	139579533	139579733	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4913.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	12.11	12.83	15.4	13.67	9.0	5.33	3.32	6.06	16.13	12.05	21.61	13.47
Merged-chr15-79270518-3	chr15	79270406	79270606	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177580, exon 7 of 14)	exon (NM_177580, exon 7 of 14)	15003.0	NM_177580	207495.0	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	5.65	9.31	10.27	16.09	13.5	10.35	8.97	10.51	12.78	14.06	1.51	4.39
Merged-chr10-30755264-3	chr10	30755077	30755277	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	48149.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.46	3.27	3.99	12.47	2.86	2.82	9.97	7.32	10.42	6.03	4.52	5.33
Merged-chr1-30930363-2	chr1	30930265	30930465	+	796.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19345.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	11.31	4.53	1.14	1.21	9.82	7.84	8.64	8.38	14.16	14.06	4.52	8.77
Merged-chr5-143038985-3	chr5	143038879	143039079	+	796.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	74041.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	18.57	19.12	35.37	3.62	15.55	23.83	8.97	4.57	9.05	12.55	7.03	4.07
Merged-chr13-55330486-3	chr13	55330391	55330591	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-761.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	10.9	10.31	5.7	2.82	10.64	14.42	1.66	6.11	11.41	11.05	18.59	5.95
Merged-chr6-15754011-3	chr6	15753911	15754111	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	33350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	13.73	6.79	11.41	9.65	7.77	3.45	8.64	21.53	20.26	2.01	12.06	8.46
Merged-chr2-160212523-3	chr2	160212434	160212634	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114960.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.65	12.83	13.69	5.23	12.27	21.64	12.95	29.72	14.55	23.1	11.56	8.77
Merged-chr10-9718225-3	chr10	9718127	9718327	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33505.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	8.88	7.29	8.56	7.64	9.0	17.87	10.63	17.83	9.64	16.57	16.08	11.28
Merged-chr5-72350426-1	chr5	72350326	72350526	+	796.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122756, intron 10 of 21)	intron (NM_001122756, intron 10 of 21)	147083.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.86	8.3	5.13	3.22	8.59	4.39	8.64	10.88	8.85	2.51	6.53	5.01
Merged-chrX-85778976-1	chrX	85778876	85779076	+	796.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2157.0	NM_001294138	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	3.63	0.75	8.56	5.23	13.09	6.27	1.99	6.95	5.9	3.51	11.05	5.33
Merged-chr8-117233408-3	chr8	117233326	117233526	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23593.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	11.31	7.29	11.98	10.86	16.36	16.62	12.29	10.82	10.82	19.08	23.62	7.52
Merged-chr5-64886304-3	chr5	64886204	64886404	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46395.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	9.29	8.05	6.85	3.22	5.73	8.47	6.98	1.91	12.0	18.58	6.03	1.25
Merged-chr4-126405256-3	chr4	126405133	126405333	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153402, intron 3 of 18)	intron (NM_153402, intron 3 of 18)	24309.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	18.17	3.52	10.27	16.09	9.82	10.03	5.98	15.93	12.98	16.57	9.04	9.71
Merged-chr1-78678681-2	chr1	78678570	78678770	+	796.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028817, intron 2 of 15)	ORR1C2|LTR|ERVL-MaLR	20230.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.85	9.31	7.42	14.08	13.5	9.41	11.96	17.44	2.75	1.51	4.02	0.63
Merged-chr2-131321431-2	chr2	131321335	131321535	+	796.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178607, intron 1 of 5)	intron (NM_178607, intron 1 of 5)	31457.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	10.5	6.79	10.27	16.49	10.64	8.78	9.3	21.53	11.41	7.53	2.01	4.39
Merged-chr9-116134863-2	chr9	116134703	116134903	+	796.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	B3A|SINE|B2	40560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.42	3.27	5.7	2.41	7.36	13.48	10.96	5.5	10.82	5.52	10.05	2.19
Merged-chr19-3833069-2	chr19	3833033	3833233	+	796.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18640.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	4.85	10.31	2.28	2.82	7.77	9.09	2.33	6.53	7.67	8.03	2.51	4.39
Merged-chr12-4536710-3	chr12	4536618	4536818	+	796.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12605.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	8.88	8.55	7.99	8.85	20.05	14.74	8.3	12.0	12.19	13.56	19.09	8.14
Merged-chr2-91498435-3	chr2	91498334	91498534	+	796.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172668, exon 31 of 38)	exon (NM_172668, exon 31 of 38)	-28328.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	5.25	6.04	10.27	6.44	4.91	11.29	6.31	3.79	30.88	41.67	30.65	24.75
Merged-chr1-88239481-1	chr1	88239381	88239581	+	796.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 15 of 41)	intron (NM_001281466, intron 15 of 41)	12461.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.63	2.26	6.85	7.24	6.14	8.15	4.65	7.46	3.54	6.03	6.53	5.64
Merged-chr9-95783829-2	chr9	95783727	95783927	+	796.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033210, intron 5 of 15)	intron (NM_001033210, intron 5 of 15)	-33469.0	NM_011643	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	4.44	4.28	5.13	8.04	18.41	7.84	7.31	24.08	9.44	4.52	11.56	6.89
Merged-chr13-58158326-2	chr13	58158230	58158430	+	796.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198004, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	681.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	5.65	7.04	9.7	21.32	9.0	7.21	9.63	4.99	20.26	12.55	13.06	9.4
Merged-chr5-130139566-3	chr5	130139468	130139668	+	796.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5320.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	16.15	16.6	13.12	10.86	18.41	21.64	8.97	12.08	6.69	19.08	8.04	7.83
Merged-chr2-83767139-3	chr2	83767046	83767246	+	796.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 8 of 29)	intron (NM_008402, intron 8 of 29)	42749.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	8.88	12.83	14.26	14.88	9.41	5.96	4.32	11.19	14.36	17.57	11.05	12.53
Merged-chr4-155221799-5	chr4	155221660	155221860	+	796.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	775.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	10.9	9.81	14.83	20.11	9.41	9.41	13.62	12.11	6.49	2.51	7.03	8.14
Merged-chr12-54969252-2	chr12	54969135	54969335	+	796.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	17101.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.67	4.53	3.42	3.62	1.23	7.21	6.64	9.93	18.1	12.55	13.57	11.9
Merged-chr1-62706487-3	chr1	62706361	62706561	+	796.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 1 of 16)	CpG	3144.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	9.69	10.31	9.13	12.47	9.0	5.64	4.98	7.35	8.85	4.52	10.55	7.52
Merged-chr18-80119077-3	chr18	80118967	80119167	+	796.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_053117, exon 3 of 3)	3' UTR (NM_053117, exon 3 of 3)	32415.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	11.31	10.31	15.97	12.87	12.68	4.7	10.63	15.31	11.8	15.06	11.05	12.53
Merged-chr5-140768536-2	chr5	140768441	140768641	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	44414.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.02	6.79	0.0	4.42	11.05	2.82	5.31	13.54	8.26	8.03	9.55	3.13
Merged-chr14-20737435-3	chr14	20737331	20737531	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039138, exon 19 of 20)	exon (NM_001039138, exon 19 of 20)	-2869.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	14.94	20.63	24.53	7.64	20.86	11.92	9.63	8.69	13.37	10.04	11.05	6.27
Merged-chr6-54954824-2	chr6	54954737	54954937	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16824.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.06	12.83	3.42	8.45	7.36	9.09	1.33	4.82	70.41	96.4	60.8	41.66
Merged-chr13-54828785-1	chr13	54828685	54828885	+	796.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39380.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.23	1.26	2.28	1.21	5.32	3.45	0.66	0.59	10.03	4.02	16.08	6.58
Merged-chr15-74934301-2	chr15	74934182	74934382	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR48B|LTR|ERV1	-20769.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.04	0.75	0.0	0.8	4.09	8.15	2.99	4.54	19.47	26.61	23.62	5.95
Merged-chr2-153076032-2	chr2	153075938	153076138	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145536, intron 6 of 8)	intron (NM_145536, intron 6 of 8)	10083.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	4.04	4.02	7.99	4.02	10.23	17.25	8.3	12.48	7.67	15.06	9.55	6.58
Merged-chr16-67620998-2	chr16	67620907	67621107	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145977)	promoter-TSS (NM_001145977)	-99.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	7.67	9.81	1.71	5.63	15.96	25.71	17.61	24.84	5.31	6.03	15.07	3.76
Merged-chr14-51087889-2	chr14	51087782	51087982	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3195.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	15.75	14.34	4.56	3.22	8.18	9.72	1.66	2.92	8.46	9.04	0.0	5.33
Merged-chr9-25585822-1	chr9	25585722	25585922	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 4 of 7)	intron (NM_026189, intron 4 of 7)	104225.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.81	2.52	0.0	4.83	7.36	1.57	9.63	14.07	5.31	2.51	5.53	8.14
Merged-chr10-44596186-2	chr10	44596119	44596319	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137471.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	8.88	7.8	3.99	6.03	9.0	6.59	9.63	12.25	3.15	10.54	11.56	10.96
Merged-chr14-79553013-2	chr14	79552935	79553135	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	L1_Mur2|LINE|L1	-34625.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	5.65	12.32	10.27	1.61	14.32	14.74	4.32	3.14	5.51	9.04	8.54	7.21
Merged-chr4-109550777-1	chr4	109550677	109550877	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19480.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	1.62	3.27	0.0	2.41	5.32	3.14	1.0	1.85	2.16	2.51	2.01	1.88
Merged-chr13-52962605-1	chr13	52962505	52962705	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	18434.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	5.25	3.52	3.99	3.22	5.73	5.64	8.3	7.4	6.49	1.0	9.04	4.07
Merged-chr6-125127987-2	chr6	125127895	125128095	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3888.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	3.23	14.59	11.41	12.07	8.18	7.53	5.31	1.46	22.62	11.05	4.52	13.78
Merged-chr17-5541369-1	chr17	5541269	5541469	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	48769.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.23	2.52	10.27	6.84	6.14	8.78	4.65	8.3	2.95	3.01	6.53	3.13
Merged-chr19-53516452-1	chr19	53516352	53516552	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12866.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	1.62	5.03	1.14	3.22	2.86	6.59	14.28	13.15	0.98	2.01	0.5	2.51
Merged-chr12-74804285-2	chr12	74804177	74804377	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	373055.0	NM_172805	238271.0	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	9.69	12.07	4.56	6.84	11.05	3.45	7.64	50.78	2.56	1.0	3.01	1.57
Merged-chr11-32542375-1	chr11	32542275	32542475	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9109.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.42	3.27	3.99	3.62	13.09	10.03	7.97	7.37	6.29	11.05	6.03	6.58
Merged-chr1-44180607-2	chr1	44180506	44180706	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011729, exon 15 of 15)	exon (NM_011729, exon 15 of 15)	32862.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	10.5	4.78	15.97	8.45	3.27	9.09	7.64	9.39	7.67	1.51	7.03	4.07
Merged-chr9-108404605-2	chr9	108404504	108404704	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001135198, exon 7 of 7)	3' UTR (NM_001135198, exon 7 of 7)	11770.0	NM_053216	112418.0	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	6.46	16.85	19.97	6.44	8.59	7.53	4.98	4.54	15.54	4.52	10.55	5.95
Merged-chr19-41992777-2	chr19	41992692	41992892	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	11029.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.46	6.54	6.85	12.47	5.32	4.7	5.65	3.84	5.9	3.01	5.02	2.51
Merged-chr3-89437575-3	chr3	89437465	89437665	+	796.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	861.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	8.88	8.3	6.28	7.64	12.27	11.92	3.99	3.73	10.23	12.55	14.57	12.84
Merged-chr5-115235497-2	chr5	115235441	115235641	+	796.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026398)	promoter-TSS (NM_026398)	-310.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	7.27	6.54	3.99	1.61	7.77	10.03	6.64	5.89	9.44	8.03	14.57	10.34
Merged-chr16-8823343-2	chr16	8823243	8823443	+	796.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6757.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.44	2.01	2.28	1.61	7.36	10.66	5.65	5.07	18.1	16.57	18.09	3.76
Merged-chr12-73554339-3	chr12	73554222	73554422	+	796.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5839.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	4.44	7.04	4.56	8.45	11.45	5.02	13.62	7.32	13.77	14.06	12.06	7.52
Merged-chr7-100150597-3	chr7	100150546	100150746	+	796.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8631.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	5.65	5.28	4.56	9.25	5.73	5.64	8.97	6.0	12.19	15.06	10.55	11.28
Merged-chr6-88048001-3	chr6	88047897	88048097	+	796.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2727.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	8.88	9.81	2.85	6.44	11.45	8.78	7.31	10.63	17.31	6.03	16.58	8.77
Merged-chr15-99456556-3	chr15	99456442	99456642	+	796.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	1206.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	12.92	8.55	11.98	10.05	11.45	7.21	7.97	14.16	10.82	11.55	15.07	10.65
Merged-chr5-100559554-3	chr5	100559451	100559651	+	796.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	12654.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	8.08	6.79	10.27	6.03	10.23	7.21	6.31	15.03	31.47	10.04	31.66	18.8
Merged-chr7-25811615-2	chr7	25811513	25811713	+	796.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028775, exon 3 of 9)	exon (NM_028775, exon 3 of 9)	4917.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	4.85	5.53	1.71	12.07	12.68	3.45	14.28	12.08	7.08	16.07	14.07	11.28
Merged-chr16-96345327-3	chr16	96345177	96345377	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16480.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	5.25	7.29	7.42	11.26	4.09	6.27	4.98	13.74	12.39	26.11	20.6	5.95
Merged-chr14-51082807-3	chr14	51082646	51082846	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8331.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.86	4.53	14.26	14.48	21.27	10.03	19.93	7.93	7.08	11.55	9.04	3.45
Merged-chr11-117718967-1	chr11	117718867	117719067	+	796.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198022, intron 4 of 21)	intron (NM_198022, intron 4 of 21)	60681.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	11.31	3.02	4.56	5.23	8.18	6.9	10.63	15.48	10.82	4.02	6.53	11.59
Merged-chr13-44231302-3	chr13	44231199	44231399	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14812.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	15.34	10.82	7.99	16.89	31.91	16.62	19.93	23.52	4.92	5.52	19.6	7.52
Merged-chr11-43352731-1	chr11	43352631	43352831	+	796.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	21730.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	5.25	4.28	3.99	6.03	6.95	5.33	1.99	3.81	9.24	10.54	13.06	6.27
Merged-chr1-180261973-3	chr1	180261867	180262067	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5667.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	8.48	8.05	17.68	12.47	11.45	8.78	13.62	7.63	10.62	4.52	13.57	10.02
Merged-chr13-37826313-5	chr13	37826299	37826499	+	796.330017	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	361.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.23	5.79	0.0	2.01	1.23	3.76	4.65	5.92	5.31	6.03	7.03	6.27
Merged-chr16-91534677-3	chr16	91534578	91534778	+	796.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7134.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	90.05	100.86	54.76	68.78	28.23	22.58	27.57	9.53	18.88	22.59	22.61	31.33
Merged-chr1-176996954-3	chr1	176996859	176997059	+	796.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 17 of 18)	intron (NM_001357390, intron 17 of 18)	-160826.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	14.13	8.3	11.98	21.72	2.45	12.86	8.97	11.92	11.41	7.53	10.05	6.27
Merged-chr19-3685958-3	chr19	3685849	3686049	+	796.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008513, intron 1 of 22)	CpG	615.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	10.09	2.01	12.55	11.26	9.41	10.35	5.31	6.76	11.01	5.52	5.02	11.59
Merged-chr17-70119019-2	chr17	70118919	70119119	+	796.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	149946.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	6.86	6.54	17.11	4.02	4.5	18.5	10.63	18.22	3.93	2.51	0.5	2.19
Merged-chr9-25076219-2	chr9	25076116	25076316	+	796.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75565.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	8.08	7.04	3.99	16.49	14.73	13.8	15.61	36.7	7.87	8.03	9.04	9.08
Merged-chr12-116449751-2	chr12	116449655	116449855	+	796.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35965.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	6.46	5.28	3.42	0.8	0.0	5.64	4.65	6.22	42.29	15.57	63.82	28.19
Merged-chr11-4596824-3	chr11	4596718	4596918	+	796.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2003.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	8.08	7.04	9.13	11.26	18.0	22.58	9.97	15.98	25.96	5.02	22.11	8.77
Merged-chr12-103338988-3	chr12	103338867	103339067	+	796.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	ORR1G|LTR|ERVL-MaLR	17034.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	2.83	4.28	4.56	6.84	7.77	4.7	6.98	4.21	13.57	2.51	15.07	8.14
Merged-chr1-64485507-3	chr1	64485393	64485593	+	796.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-47311.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	10.9	7.29	9.13	20.11	6.14	4.08	10.63	13.93	8.46	2.51	17.08	7.21
Merged-chr14-26639415-3	chr14	26639335	26639535	+	796.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1301.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	6.46	10.82	9.13	8.85	9.82	12.54	12.29	6.08	14.75	16.07	12.56	9.71
Merged-chr19-10603033-2	chr19	10602925	10603125	+	796.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1233.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	5.65	15.59	3.99	14.88	10.23	6.9	8.64	13.29	8.06	8.03	20.1	8.77
Merged-chr3-88396030-3	chr3	88395913	88396113	+	796.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025928, exon 4 of 5)	exon (NM_025928, exon 4 of 5)	-11547.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	10.09	6.04	9.7	2.01	9.82	10.98	7.97	9.42	31.86	24.1	25.63	10.34
Merged-chr17-45953741-2	chr17	45953642	45953842	+	796.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71421.0	NM_001110267	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	9.69	2.52	9.7	14.08	7.77	8.47	18.27	17.36	11.41	4.02	11.56	5.64
Merged-chr3-109047907-2	chr3	109047784	109047984	+	796.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-20277.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.23	0.0	0.0	7.24	17.18	9.41	3.32	7.21	12.78	15.06	16.58	12.22
Merged-chr14-63146447-2	chr14	63146339	63146539	+	796.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007798)	TTS (NM_007798)	23977.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	10.9	10.31	2.28	8.04	13.5	11.6	4.65	8.02	8.26	12.55	1.0	2.19
Merged-chr3-130878972-3	chr3	130878880	130879080	+	796.1611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148582.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	6.46	4.53	10.27	13.67	15.55	10.35	9.97	28.49	20.85	14.56	31.15	11.9
Merged-chr5-124353820-3	chr5	124353700	124353900	+	796.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	CpG	828.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	8.48	8.55	6.28	14.88	7.77	15.05	7.64	6.62	14.55	13.56	11.05	12.84
Merged-chr14-45231466-4	chr14	45231395	45231595	+	796.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	11778.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	3.23	6.29	8.56	6.03	3.68	7.21	9.3	4.21	3.93	14.06	4.52	6.27
Merged-chr13-58117855-3	chr13	58117765	58117965	+	796.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	12.52	13.58	4.56	16.09	6.14	10.66	6.31	11.58	18.88	13.56	14.07	11.59
Merged-chr13-12047254-2	chr13	12047132	12047332	+	796.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	59713.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	1.62	2.52	5.7	9.25	11.05	3.76	4.32	11.94	10.82	9.54	11.56	8.46
Merged-chr9-49483620-2	chr9	49483523	49483723	+	796.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	2602.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	3.23	7.29	16.54	4.02	14.32	13.8	7.64	19.74	2.56	1.0	3.01	0.63
Merged-chr13-6062457-3	chr13	6062376	6062576	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	200987.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	9.69	11.82	18.83	10.86	8.59	14.11	11.63	9.73	11.21	11.55	18.09	5.64
Merged-chr19-45032756-3	chr19	45032672	45032872	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195265, intron 10 of 15)	L2b|LINE|L2	13000.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	11.71	17.36	11.98	6.03	9.0	10.66	5.65	5.38	9.83	15.57	9.04	9.4
Merged-chr18-36678572-3	chr18	36678457	36678657	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083317)	promoter-TSS (NM_001083317)	-658.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	8.08	11.32	5.7	4.83	8.18	11.6	11.29	11.38	6.49	13.56	5.53	14.41
Merged-chr8-56063374-3	chr8	56063287	56063487	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	122562.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	7.27	6.29	12.55	12.07	10.23	8.78	10.3	14.69	10.62	14.06	13.06	17.23
Merged-chr10-93487140-3	chr10	93487051	93487251	+	796.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1617.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	8.08	11.57	15.4	12.07	17.59	7.21	10.3	17.66	13.77	6.03	12.06	7.52
Merged-chr7-122396150-1	chr7	122396050	122396250	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	107025.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.25	3.02	4.56	3.22	4.5	6.9	2.66	6.95	7.47	5.52	7.03	9.4
Merged-chr4-43975103-3	chr4	43975022	43975222	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-8382.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	9.29	7.8	6.28	11.26	18.0	14.42	3.65	10.96	8.26	12.05	15.07	7.83
Merged-chr19-3699934-1	chr19	3699834	3700034	+	796.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8359.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	8.88	6.79	9.13	9.25	8.18	9.09	4.65	2.61	11.8	12.05	8.54	18.48
Merged-chr8-128652444-1	chr8	128652344	128652544	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33210.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	1.21	3.02	7.42	2.41	0.82	1.57	7.64	2.47	5.7	4.02	5.53	2.19
Merged-chr12-87393572-3	chr12	87393475	87393675	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5220.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	7.27	5.03	11.98	10.46	4.91	16.31	7.64	7.96	12.98	8.03	13.06	5.01
Merged-chr1-176074732-1	chr1	176074632	176074832	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	139210.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	2.42	5.79	7.42	11.26	6.14	8.47	6.31	10.29	1.38	1.0	2.51	3.13
Merged-chr4-53210875-1	chr4	53210775	53210975	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35321.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.23	2.52	4.56	2.41	7.77	3.76	3.99	11.27	5.11	0.5	7.54	6.27
Merged-chr19-54115098-1	chr19	54114998	54115198	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69916.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	4.85	5.53	5.13	6.84	4.09	5.96	7.97	8.5	1.77	2.01	5.02	5.64
Merged-chr6-15464548-1	chr6	15464448	15464648	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON9|Unknown|Unknown	-256113.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.83	4.02	1.14	2.41	3.27	5.96	8.3	11.61	6.29	0.0	2.51	3.45
Merged-chr15-61994081-1	chr15	61993981	61994181	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8740.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.04	4.02	6.85	5.23	4.5	8.78	4.65	5.44	4.92	4.52	8.04	3.13
Merged-chr15-76868868-1	chr15	76868768	76868968	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007568, intron 3 of 3)	intron (NM_001007568, intron 3 of 3)	2567.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	2.42	1.51	0.0	1.61	9.82	1.57	3.65	6.0	1.57	0.5	5.53	3.13
Merged-chr4-101169962-2	chr4	101169848	101170048	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	95334.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.46	3.27	10.27	10.86	1.64	3.14	8.97	13.12	8.46	8.03	12.56	2.82
Merged-chr10-30654441-1	chr10	30654341	30654541	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001358841, exon 12 of 16)	exon (NM_001358841, exon 12 of 16)	1426.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.06	3.77	2.28	3.62	6.95	5.96	7.64	5.58	5.11	6.53	8.54	5.64
Merged-chr12-35049252-2	chr12	35049152	35049352	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	2063.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	8.08	6.29	12.55	8.85	4.91	5.64	11.96	13.37	7.28	2.01	2.51	8.46
Merged-chr3-79569367-1	chr3	79569267	79569467	+	796.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152118, intron 1 of 1)	intron (NR_152118, intron 1 of 1)	1175.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	2.42	0.75	0.0	1.21	4.09	0.31	1.0	0.81	4.33	2.01	5.53	5.95
Merged-chr4-44020195-1	chr4	44020095	44020295	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080384, intron 4 of 5)	intron (NM_001080384, intron 4 of 5)	7545.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	4.85	5.79	7.99	3.22	5.32	3.76	6.31	12.36	2.16	5.02	9.04	1.57
Merged-chr11-6497372-1	chr11	6497272	6497472	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21296.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	16.96	10.31	14.26	15.69	0.0	0.0	0.0	0.0	5.11	9.04	4.52	3.76
Merged-chr13-8709271-2	chr13	8709180	8709380	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 6 of 10)	intron (NR_110345, intron 6 of 10)	161764.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	2.42	3.02	4.56	6.03	15.96	16.31	27.9	32.52	9.24	8.54	12.56	11.28
Merged-chr14-25842545-1	chr14	25842445	25842645	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	CpG	390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	9.69	10.56	13.12	8.04	5.32	11.92	9.3	12.2	12.59	11.55	15.07	8.46
Merged-chr1-135280834-1	chr1	135280734	135280934	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	MLTR31A_MM|LTR|ERVK	3250.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	8.88	3.52	5.7	6.03	5.73	6.59	6.64	10.51	6.1	2.01	9.04	3.45
Merged-chr4-43474504-1	chr4	43474404	43474604	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9205.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	9.29	2.01	4.56	6.03	8.18	2.2	4.98	9.06	5.31	5.52	4.52	8.46
Merged-chr3-116163752-1	chr3	116163652	116163852	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34064.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.23	1.01	2.85	5.63	2.05	0.31	8.64	6.73	6.49	5.52	4.52	1.88
Merged-chr13-109736905-2	chr13	109736808	109737008	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-166901.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	8.88	3.02	3.99	12.07	5.73	16.93	21.26	23.19	5.31	2.01	6.03	8.77
Merged-chr18-5296188-1	chr18	5296088	5296288	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	38251.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.81	0.75	6.85	4.02	6.55	3.14	8.3	5.58	2.95	1.0	9.55	2.19
Merged-chr18-40439852-2	chr18	40439747	40439947	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	181486.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	1.21	0.5	0.0	4.83	2.45	4.08	6.31	12.0	40.91	36.15	51.76	26.63
Merged-chr6-72186163-1	chr6	72186063	72186263	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	49414.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	3.63	3.77	4.56	1.21	2.86	1.88	3.65	3.62	2.75	6.03	3.01	1.57
Merged-chr4-56026838-1	chr4	56026738	56026938	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-494363.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.06	0.75	3.42	7.64	8.18	3.76	8.3	9.25	7.08	4.02	5.53	6.89
Merged-chr6-4983426-1	chr6	4983326	4983526	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	80106.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.46	5.53	5.13	0.8	4.91	4.08	8.64	5.75	9.24	2.01	5.53	0.63
Merged-chr14-98401597-1	chr14	98401497	98401697	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-231832.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	6.86	1.76	2.28	7.24	13.09	2.82	5.65	10.63	1.97	2.01	0.5	3.45
Merged-chr13-29431103-2	chr13	29431017	29431217	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	414862.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	6.46	9.81	3.42	12.07	6.55	10.66	6.98	11.92	10.42	3.01	6.53	4.39
Merged-chr14-19747901-1	chr14	19747801	19748001	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3356.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.81	3.77	0.0	0.0	5.73	13.8	11.96	7.82	5.11	4.02	7.03	4.7
Merged-chr3-69179895-1	chr3	69179795	69179995	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-42524.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.23	6.54	2.28	8.04	8.18	8.15	3.32	9.73	2.16	3.01	6.53	5.01
Merged-chr2-3714001-1	chr2	3713901	3714101	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	543.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.86	12.58	10.84	10.46	6.55	11.29	5.98	5.52	8.46	10.04	6.53	5.33
Merged-chr10-26890767-3	chr10	26890661	26890861	+	795.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	118249.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	7.27	11.82	7.99	13.27	7.77	8.47	8.64	11.92	15.74	13.05	18.09	5.64
Merged-chr3-37659990-2	chr3	37659881	37660081	+	795.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20034.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	9.29	9.81	11.98	11.66	4.09	6.59	4.65	9.93	6.1	8.03	13.06	2.51
Merged-chr9-71129143-3	chr9	71129052	71129252	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 4 of 6)	B3|SINE|B2	33481.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	11.31	11.82	14.26	19.71	11.45	19.76	6.98	12.59	8.06	13.05	12.56	6.89
Merged-chr15-64089433-3	chr15	64089326	64089526	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28978.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	16.15	6.79	10.84	16.09	5.73	15.05	11.63	16.63	12.0	14.06	18.59	5.01
Merged-chr11-63230966-3	chr11	63230866	63231066	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	98163.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	7.67	9.06	2.28	8.85	6.55	10.66	2.66	8.47	15.93	8.54	20.6	19.11
Merged-chr16-76610552-3	chr16	76610434	76610634	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61739.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	11.71	5.79	6.85	8.04	12.27	16.31	7.97	17.33	16.13	14.56	15.07	4.07
Merged-chr5-101753830-3	chr5	101753714	101753914	+	795.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-11316.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	15.75	13.83	16.54	9.65	11.45	12.54	8.64	4.74	12.59	8.03	15.58	8.14
Merged-chr13-89779491-2	chr13	89779381	89779581	+	795.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36969.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	7.27	9.81	3.42	7.24	9.82	14.42	4.32	7.54	19.67	15.06	16.08	10.34
Merged-chr3-84853086-1	chr3	84852986	84853186	+	795.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	-11059.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.42	3.02	2.85	1.61	13.91	10.03	6.31	5.78	2.75	4.02	3.01	2.82
Merged-chr2-104685592-3	chr2	104685490	104685690	+	795.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	26572.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	6.46	6.29	0.57	1.61	6.14	12.54	2.33	7.57	14.95	9.04	17.08	6.58
Merged-chr4-87870761-3	chr4	87870655	87870855	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-64432.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.23	6.79	13.69	9.25	6.95	7.53	4.65	13.54	17.7	7.03	31.15	13.47
Merged-chr3-95986076-3	chr3	95985992	95986192	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045872, intron 2 of 2)	intron (NR_045872, intron 2 of 2)	582.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	11.71	9.56	9.7	10.86	11.45	8.78	10.63	7.54	16.72	10.54	13.57	6.89
Merged-chr5-21692476-3	chr5	21692391	21692591	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359965, intron 1 of 4)	intron (NM_001359965, intron 1 of 4)	8905.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	6.46	6.54	9.13	4.83	3.27	9.72	4.32	7.23	13.96	16.57	23.62	11.59
Merged-chr18-38144835-3	chr18	38144714	38144914	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64948.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	6.46	6.04	7.99	8.04	11.86	10.03	5.31	13.54	14.16	16.07	27.64	17.23
Merged-chr3-65418329-3	chr3	65418227	65418427	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25774.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.23	5.53	7.42	14.48	11.45	19.76	17.61	28.51	14.36	9.04	17.59	7.21
Merged-chr9-110667378-3	chr9	110667269	110667469	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	10866.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	8.88	3.77	14.26	13.67	9.0	9.09	4.65	11.38	9.64	16.57	13.57	14.41
Merged-chr16-94586439-3	chr16	94586337	94586537	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	15530.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.67	5.79	19.97	7.64	15.14	12.54	11.29	15.28	8.26	14.06	4.02	13.47
Merged-chr15-73720955-3	chr15	73720869	73721069	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2176.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.86	13.33	11.41	12.47	9.41	14.74	4.32	10.79	18.49	7.53	19.09	9.08
Merged-chr13-95325293-3	chr13	95325180	95325380	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028106, exon 1 of 2)	5' UTR (NM_028106, exon 1 of 2)	455.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	6.06	10.82	3.42	5.23	12.68	7.84	4.65	20.8	8.65	11.55	14.57	7.52
Merged-chr18-12947334-2	chr18	12947227	12947427	+	795.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-5486.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	1.62	5.28	2.85	6.03	4.09	6.59	6.31	8.3	8.85	3.01	13.06	2.19
Merged-chr13-81401949-2	chr13	81401857	81402057	+	795.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 77 of 89)	MTE2b|LTR|ERVL-MaLR	231187.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	4.44	5.28	5.13	3.22	9.82	11.6	9.3	26.78	13.57	10.54	34.67	7.21
Merged-chr5-139375767-2	chr5	139375649	139375849	+	795.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	-1948.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.65	4.53	7.42	0.8	6.14	3.14	1.99	9.06	6.88	14.06	13.57	9.4
Merged-chr13-54055689-1	chr13	54055589	54055789	+	795.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010076)	promoter-TSS (NM_010076)	-31.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	4.85	7.04	5.7	2.41	7.36	6.59	1.99	4.63	26.36	9.54	22.61	10.65
Merged-chr10-96416825-3	chr10	96416729	96416929	+	795.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	190622.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.08	7.04	13.12	17.7	14.32	25.71	29.9	27.0	13.37	13.05	27.13	15.35
Merged-chr7-126862428-3	chr7	126862345	126862545	+	795.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153580)	promoter-TSS (NM_153580)	473.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	8.48	9.06	3.99	7.24	13.5	9.41	9.63	8.05	21.83	14.06	15.07	8.77
Merged-chr2-66410207-3	chr2	66410107	66410307	+	795.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30630.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	14.94	9.06	15.4	11.66	11.86	17.25	12.95	18.31	5.11	12.55	7.54	9.4
Merged-chr3-41582545-3	chr3	41582455	41582655	+	795.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	17675.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	10.5	6.29	22.25	8.85	13.91	18.81	7.31	18.48	17.51	10.04	11.05	9.08
Merged-chr9-105648523-2	chr9	105648412	105648612	+	795.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081309, intron 2 of 19)	intron (NM_001081309, intron 2 of 19)	5517.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	7.67	9.06	20.54	22.93	11.45	9.09	9.63	21.59	0.39	1.51	1.51	0.0
Merged-chr8-10668328-2	chr8	10668226	10668426	+	795.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	214128.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	6.46	7.55	26.24	18.5	13.09	5.02	12.62	16.4	5.51	8.03	10.05	2.82
Merged-chr13-58601453-3	chr13	58601349	58601549	+	795.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	9428.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	20.19	14.59	11.41	11.66	8.59	18.5	7.97	7.07	15.34	16.57	24.12	13.78
Merged-chr6-123095492-6	chr6	123095366	123095566	+	795.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27224.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	5.25	6.54	0.0	4.83	8.18	7.53	9.3	4.12	5.7	4.52	5.02	4.39
Merged-chr6-115480131-3	chr6	115480025	115480225	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58059.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	9.29	9.06	10.84	2.41	4.09	11.6	5.31	11.27	15.54	21.09	15.07	12.53
Merged-chr7-63912609-3	chr7	63912523	63912723	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4234.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	11.31	6.04	14.83	8.04	18.0	13.48	8.64	14.3	8.65	15.06	16.58	14.72
Merged-chr13-25854651-3	chr13	25854560	25854760	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31A|LTR|ERV1	111656.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	8.88	3.02	7.99	14.88	14.32	7.53	13.62	16.43	17.7	13.56	21.1	8.14
Merged-chr8-11215413-3	chr8	11215308	11215508	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009931, intron 40 of 51)	intron (NM_009931, intron 40 of 51)	-97397.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	7.27	6.04	15.97	12.07	10.64	20.38	16.61	16.82	12.0	13.05	17.08	9.4
Merged-chr5-136085540-2	chr5	136085440	136085640	+	795.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1624.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	6.86	10.82	10.27	2.41	12.68	8.15	9.63	7.82	11.41	4.52	9.04	7.83
Merged-chr5-150155641-2	chr5	150155548	150155748	+	795.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104282.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	6.06	3.02	1.14	4.83	7.77	8.15	3.99	5.64	15.93	14.56	23.11	8.14
Merged-chr12-70156256-2	chr12	70156179	70156379	+	795.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195033, intron 1 of 12)	intron (NM_001195033, intron 1 of 12)	2108.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	2.42	6.79	10.27	4.83	4.91	10.03	12.62	8.64	4.92	9.04	2.51	6.58
Merged-chr2-75965192-3	chr2	75965110	75965310	+	795.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12969.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	10.5	8.55	7.99	8.04	14.73	10.66	3.99	11.36	10.82	16.07	18.59	13.16
Merged-chr3-127527774-3	chr3	127527690	127527890	+	795.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17299.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	8.48	6.29	2.85	6.44	7.77	1.25	5.98	11.3	36.39	28.12	47.23	19.74
Merged-chr9-75038109-3	chr9	75038022	75038222	+	795.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152135, intron 2 of 4)	CpG	390.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	9.69	11.32	8.56	14.08	12.27	7.21	11.63	10.93	10.23	12.55	9.55	10.34
Merged-chr15-4821385-2	chr15	4821277	4821477	+	795.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-77360.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	4.85	4.28	11.41	0.8	10.64	17.25	13.29	9.03	8.85	13.56	9.04	4.07
Merged-chr18-56989681-3	chr18	56989594	56989794	+	795.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14315.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	13.73	11.07	7.99	9.25	18.82	11.6	14.95	17.8	11.8	10.54	11.56	7.52
Merged-chr9-85693358-3	chr9	85693282	85693482	+	795.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175371, intron 25 of 27)	intron (NM_175371, intron 25 of 27)	55952.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.85	4.28	15.4	13.67	10.64	11.6	7.64	22.85	7.67	10.04	19.09	8.77
Merged-chr6-34629192-3	chr6	34629101	34629301	+	795.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	30697.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	10.5	4.02	14.26	6.44	8.59	12.54	7.64	13.04	16.33	4.52	13.57	6.58
Merged-chr11-26201085-2	chr11	26200966	26201166	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-1174.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	6.06	4.53	3.99	7.24	15.14	11.29	9.97	9.95	11.01	11.05	17.08	6.58
Merged-chrX-20829109-2	chrX	20829013	20829213	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19430.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	5.65	3.77	7.42	9.65	11.45	8.78	3.32	7.71	3.93	4.02	14.07	9.71
Merged-chr7-92630374-1	chr7	92630274	92630474	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028665, intron 2 of 11)	intron (NM_028665, intron 2 of 11)	6768.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	2.02	4.53	3.99	3.22	6.55	12.23	5.98	11.05	4.92	6.53	3.01	3.45
Merged-chr6-49012409-2	chr6	49012287	49012487	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12771.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	6.06	1.76	9.13	7.64	7.36	1.57	3.32	8.5	12.0	3.01	6.53	8.77
Merged-chr2-155363626-1	chr2	155363526	155363726	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-6202.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	8.88	5.28	10.27	2.82	9.82	3.45	6.64	7.85	5.31	11.05	10.05	2.19
Merged-chr14-98929514-1	chr14	98929414	98929614	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	116622.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.4	1.01	3.42	4.02	9.0	1.88	7.31	16.32	0.0	0.0	1.0	0.63
Merged-chr12-36521953-2	chr12	36521853	36522053	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289503, intron 7 of 9)	intron (NM_001289503, intron 7 of 9)	106337.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	3.23	3.27	2.28	7.24	2.45	5.02	2.33	3.11	15.74	4.52	18.09	5.95
Merged-chr11-51328728-3	chr11	51328621	51328821	+	795.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	38801.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	9.29	5.53	7.99	15.28	12.68	7.53	10.63	17.64	12.39	11.05	16.08	14.1
Merged-chr7-44816814-2	chr7	44816765	44816965	+	795.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033136)	promoter-TSS (NR_033136)	-207.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	12.52	9.31	11.41	5.63	5.32	4.7	2.99	8.5	9.24	5.02	10.55	6.58
Merged-chr4-123423079-2	chr4	123422975	123423175	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11164.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	4.44	3.52	1.14	2.41	6.55	7.84	5.31	8.64	8.65	6.53	29.14	6.89
Merged-chr9-113704942-1	chr9	113704842	113705042	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	3317.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	5.65	2.01	1.14	1.61	5.73	4.08	5.98	7.18	3.74	6.53	3.52	6.58
Merged-chr6-115485849-1	chr6	115485749	115485949	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	-58855.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	5.25	4.78	5.7	6.44	9.0	8.15	2.99	7.74	8.85	11.05	9.04	3.13
Merged-chr2-103934841-2	chr2	103934744	103934944	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23151.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.86	4.78	5.7	3.22	4.09	9.41	2.66	5.47	10.82	8.03	8.04	1.88
Merged-chr4-57028152-3	chr4	57028070	57028270	+	795.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355492, intron 18 of 24)	intron (NM_001355492, intron 18 of 24)	-37779.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	20.59	12.58	10.84	8.85	10.64	16.62	10.96	19.18	8.65	14.56	12.56	4.7
Merged-chr12-41300488-2	chr12	41300387	41300587	+	795.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	185570.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	7.27	9.81	12.55	10.86	8.59	12.86	14.62	22.35	14.36	7.53	6.03	4.7
Merged-chr5-117396627-3	chr5	117396528	117396728	+	795.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7605.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	10.09	3.77	19.4	13.27	8.18	7.21	8.64	13.07	10.03	19.58	14.57	13.16
Merged-chr11-108104613-3	chr11	108104526	108104726	+	795.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	MTD|LTR|ERVL-MaLR	107778.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	6.86	5.28	18.25	8.85	24.96	9.09	9.63	14.44	14.55	8.54	17.08	9.4
Merged-chr4-149650676-3	chr4	149650566	149650766	+	795.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164052, exon 22 of 22)	exon (NM_001164052, exon 22 of 22)	4901.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	9.69	9.56	10.84	12.87	11.45	13.17	11.29	8.38	18.29	10.54	21.1	13.78
Merged-chr6-86447235-3	chr6	86447140	86447340	+	795.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243741, intron 3 of 9)	intron (NM_001243741, intron 3 of 9)	8594.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	11.31	3.27	17.68	2.41	6.95	16.62	9.63	4.85	9.44	10.54	6.53	3.45
Merged-chr4-148114955-3	chr4	148114842	148115042	+	795.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15756.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	16.96	5.79	12.55	11.66	3.68	6.9	7.64	10.93	13.57	13.56	17.08	8.46
Merged-chr12-105731175-1	chr12	105731075	105731275	+	795.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	25193.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	3.23	3.02	1.71	4.83	5.73	4.39	6.31	5.8	4.33	9.04	4.02	3.76
Merged-chr11-86356702-3	chr11	86356602	86356802	+	795.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	823.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	10.5	10.06	10.27	12.07	11.05	11.92	1.33	10.79	10.82	10.54	11.05	9.08
Merged-chr11-11557849-3	chr11	11557732	11557932	+	795.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68566.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	6.86	6.54	11.41	12.07	11.86	10.35	9.97	12.73	15.93	4.52	9.04	7.83
Merged-chr12-85420986-3	chr12	85420923	85421123	+	795.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46306.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	12.52	13.58	17.68	4.02	16.77	15.05	7.97	8.47	11.01	9.54	16.08	4.07
Merged-chr16-30775502-5	chr16	30775408	30775608	+	795.34668	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175785.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.63	3.02	13.69	3.22	3.27	5.02	2.66	6.39	3.93	4.02	6.53	5.33
Merged-chr9-45312015-2	chr9	45311909	45312109	+	795.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7091.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.04	6.79	5.7	1.61	4.91	7.21	1.66	9.34	19.67	10.54	18.09	12.84
Merged-chr7-97034391-2	chr7	97034287	97034487	+	795.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 9 of 13)	L2a|LINE|L2	-47364.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	14.54	21.13	20.54	7.64	5.32	7.21	2.99	1.46	15.74	11.05	15.58	6.58
Merged-chr2-127273962-2	chr2	127273850	127274050	+	795.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139308, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	3721.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	5.25	2.52	5.13	4.83	7.77	5.96	4.98	5.92	16.92	9.04	13.57	10.34
Merged-chr2-180966217-2	chr2	180966116	180966316	+	795.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-1009.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	6.86	14.59	11.41	14.48	1.64	1.88	0.0	1.57	10.62	11.05	18.09	10.65
Merged-chr1-9813111-1	chr1	9813011	9813211	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	14981.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.04	4.28	7.99	4.42	8.18	4.08	8.64	9.56	5.11	9.04	12.56	5.95
Merged-chr10-82793795-1	chr10	82793695	82793895	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16B|LTR|ERVL	-18328.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	8.08	6.54	6.28	2.82	7.77	4.39	10.63	9.11	4.92	7.03	2.01	1.25
Merged-chr10-44590213-1	chr10	44590113	44590313	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-131465.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.86	4.28	1.14	6.84	6.55	5.33	7.64	6.42	4.13	9.04	5.53	3.45
Merged-chr4-139006825-1	chr4	139006725	139006925	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029857, intron 7 of 16)	intron (NM_029857, intron 7 of 16)	33920.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	15.34	4.53	11.41	12.07	1.23	0.0	0.66	1.15	1.77	1.51	8.04	6.27
Merged-chr16-52094895-3	chr16	52094787	52094987	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63338.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	8.08	13.83	15.4	6.84	20.05	10.66	6.64	12.81	24.78	16.57	14.57	9.4
Merged-chr2-14056005-5	chr2	14055858	14056058	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013935)	promoter-TSS (NM_013935)	77.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	5.25	6.54	3.42	10.05	14.73	8.78	8.64	10.74	9.05	9.04	12.06	9.71
Merged-chr6-38352648-3	chr6	38352549	38352749	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	PB1|SINE|Alu	1954.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	12.52	21.38	7.42	6.84	14.32	17.25	5.65	6.7	16.72	20.08	10.05	4.07
Merged-chr8-78889859-1	chr8	78889759	78889959	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68707.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.85	10.06	6.85	6.03	6.95	15.37	6.98	14.41	6.29	0.0	6.53	8.77
Merged-chr16-55755667-1	chr16	55755567	55755767	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66471.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.69	7.29	2.28	2.41	4.91	25.71	9.63	8.5	18.49	8.03	8.54	3.13
Merged-chr11-69060965-4	chr11	69060810	69061010	+	795.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028005, exon 1 of 1)	3' UTR (NM_028005, exon 1 of 1)	1135.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	9.69	12.83	13.12	2.01	5.73	6.27	4.98	5.36	10.03	12.55	8.54	9.71
Merged-chr7-19692699-3	chr7	19692608	19692808	+	795.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-49.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	4.44	7.04	0.0	9.65	11.05	5.02	10.96	14.13	12.59	13.56	13.57	14.1
Merged-chr11-48833842-3	chr11	48833705	48833905	+	795.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	-3666.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	10.9	6.54	9.13	9.25	9.41	12.86	6.64	8.05	13.57	9.04	14.07	14.1
Merged-chr11-9388666-2	chr11	9388560	9388760	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	196718.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.25	2.26	6.85	11.66	15.96	6.27	3.99	15.11	16.13	5.52	13.06	7.21
Merged-chr2-71328997-2	chr2	71328902	71329102	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	38552.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	4.85	4.02	0.0	3.22	9.82	17.56	5.65	8.19	20.46	13.05	19.6	8.14
Merged-chr10-45000959-3	chr10	45000785	45000985	+	795.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66329.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	4.04	7.29	2.28	3.22	5.32	4.39	5.65	3.59	10.03	8.03	4.52	8.14
Merged-chr15-78580547-2	chr15	78580446	78580646	+	795.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1043.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	8.48	9.06	11.98	14.08	17.18	7.21	19.93	18.73	5.51	2.51	5.02	0.63
Merged-chr6-145835560-1	chr6	145835460	145835660	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27177.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	2.42	2.52	4.56	6.03	8.59	5.33	5.98	11.41	5.11	0.0	6.03	3.45
Merged-chr15-65108795-1	chr15	65108695	65108895	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186499.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	2.02	2.01	1.14	2.41	10.23	7.53	7.31	20.61	3.93	6.03	2.01	0.63
Merged-chr15-13370053-3	chr15	13369959	13370159	+	795.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-196384.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	9.69	6.54	7.99	10.86	10.23	6.27	20.59	20.72	20.26	22.09	18.59	12.84
Merged-chr17-83271631-3	chr17	83271498	83271698	+	795.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	56315.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	11.71	7.29	6.28	8.04	10.64	10.66	2.99	12.48	7.67	7.53	8.54	6.89
Merged-chr9-61431989-2	chr9	61431895	61432095	+	795.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59629.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	18.98	12.07	11.41	8.04	13.91	13.8	11.63	6.87	21.24	7.53	10.55	5.33
Merged-chr3-95662856-6	chr3	95662924	95663124	+	795.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	4303.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.63	4.02	9.13	6.44	8.59	6.27	4.65	2.61	7.87	2.01	6.53	9.4
Merged-chr5-121382914-3	chr5	121382803	121383003	+	795.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2506.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.48	9.31	5.7	8.04	14.32	10.03	4.98	11.47	20.26	8.54	9.04	12.84
Merged-chr7-143625287-3	chr7	143625170	143625370	+	795.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175649, intron 1 of 7)	RMER4A|LTR|ERVK	2575.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.04	15.09	0.57	10.46	12.27	12.86	5.65	7.15	12.78	24.1	3.52	8.14
Merged-chr2-166083631-2	chr2	166083527	166083727	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	71658.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.85	8.8	4.56	5.63	10.64	10.03	11.63	13.99	12.0	4.02	12.56	8.46
Merged-chr11-77239870-2	chr11	77239763	77239963	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	23438.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	7.27	6.29	3.99	11.26	12.27	11.29	7.31	8.97	13.18	5.52	4.52	7.83
Merged-chr8-94857974-2	chr8	94857891	94858091	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009090, intron 2 of 8)	CpG-14378	541.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	6.86	6.29	1.14	3.22	5.73	8.15	15.94	8.66	14.16	6.03	7.03	5.33
Merged-chr2-181931258-2	chr2	181931163	181931363	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCTG)n|Simple_repeat|Simple_repeat	-59963.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	8.88	9.31	8.56	7.24	20.86	11.29	27.24	15.2	8.65	14.06	19.6	19.74
Merged-chr6-124919839-3	chr6	124919731	124919931	+	795.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-1885.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	6.86	12.07	12.55	8.04	15.55	13.17	5.31	4.74	19.67	16.07	16.08	12.53
Merged-chr4-101641699-2	chr4	101641601	101641801	+	795.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6082.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.83	12.83	8.56	6.44	11.86	23.2	9.97	4.79	13.96	13.56	13.06	5.95
Merged-chr5-64811252-2	chr5	64811142	64811342	+	795.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7719.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	8.88	4.53	17.11	7.24	12.68	5.33	7.97	13.91	6.29	8.54	7.03	12.53
Merged-chr13-111868126-3	chr13	111867977	111868177	+	795.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130345, exon 1 of 3)	non-coding (NR_130345, exon 1 of 3)	141.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.83	6.79	5.7	4.42	10.23	8.78	12.95	10.21	10.42	10.04	6.03	12.53
Merged-chr17-26500469-3	chr17	26500350	26500550	+	795.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	8022.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	16.56	21.88	6.85	10.86	20.05	41.71	5.31	4.09	17.11	10.04	7.54	7.83
Merged-chr4-3743429-3	chr4	3743307	3743507	+	795.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	28443.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	8.48	5.53	0.57	8.85	14.32	6.59	8.3	10.4	15.74	11.05	17.59	16.29
Merged-chr9-68969276-2	chr9	68969167	68969367	+	795.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	MTE2b|LTR|ERVL-MaLR	203921.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	11.31	13.33	7.42	8.04	11.45	9.72	10.96	9.28	8.26	2.51	2.01	2.82
Merged-chr1-36617034-3	chr1	36616938	36617138	+	795.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	Lx7|LINE|L1	-23706.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	24.63	9.56	17.11	24.94	12.68	4.39	4.65	10.04	11.41	10.54	8.04	7.83
Merged-chr17-71221678-3	chr17	71221613	71221813	+	795.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357791, intron 2 of 19)	B1F|SINE|Alu	17059.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.25	4.53	9.13	4.42	6.95	14.74	22.59	11.94	4.13	2.51	15.58	10.65
Merged-chr17-53594854-3	chr17	53594774	53594974	+	795.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190846, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	10748.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	13.33	14.59	13.12	10.05	28.23	18.19	14.95	25.29	13.57	10.54	10.55	8.77
Merged-chr5-124497028-3	chr5	124496921	124497121	+	795.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	13866.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	10.9	6.04	18.25	2.41	16.36	31.36	9.97	14.13	9.64	8.54	16.08	14.1
Merged-chr12-110957203-3	chr12	110957113	110957313	+	795.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175336, intron 18 of 20)	L1MB7|LINE|L1	21405.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	2.83	14.59	10.84	10.05	16.77	8.47	1.33	9.81	11.01	7.53	19.6	12.84
Merged-chr13-17755177-3	chr13	17755066	17755266	+	795.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 5 of 13)	ORR1E|LTR|ERVL-MaLR	7693.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	8.88	9.56	10.84	14.48	11.05	11.92	6.98	21.87	17.51	13.56	15.07	8.14
Merged-chr2-60817502-3	chr2	60817392	60817592	+	795.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63946.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	10.9	11.07	13.12	6.84	15.14	9.09	16.28	25.88	16.52	11.55	26.13	9.08
Merged-chr16-25050224-1	chr16	25050124	25050324	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9415.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	1.62	2.26	0.0	3.62	2.45	2.2	5.98	6.7	2.36	4.02	3.01	5.95
Merged-chr10-39386375-2	chr10	39386272	39386472	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	16573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	14.94	7.29	6.85	4.02	19.23	24.77	19.27	28.74	6.29	10.04	11.56	5.01
Merged-chrX-21690401-1	chrX	21690301	21690501	+	795.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24499.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	2.83	1.76	3.42	6.44	6.55	2.82	1.99	3.98	11.6	15.06	3.52	0.31
Merged-chr6-89580039-1	chr6	89579939	89580139	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	15613.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	5.65	2.26	3.99	2.41	5.73	10.98	6.64	6.48	3.15	3.01	8.54	3.13
Merged-chr13-114931919-1	chr13	114931819	114932019	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008396, exon 1 of 30)	exon (NM_008396, exon 1 of 30)	181.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	3.63	6.29	5.7	3.62	1.64	0.94	1.0	1.77	1.97	1.0	1.0	4.39
Merged-chr4-138091941-1	chr4	138091841	138092041	+	795.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172703, intron 5 of 34)	B1_Mur1|SINE|Alu	46577.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	1.62	1.76	3.42	4.02	3.27	4.39	0.0	1.54	11.6	10.04	8.04	5.33
Merged-chr12-99564699-3	chr12	99564581	99564781	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 1 of 3)	intron (NR_136760, intron 1 of 3)	840.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	4.44	4.53	10.84	11.66	7.77	2.2	6.98	8.05	12.0	3.51	8.54	11.28
Merged-chr13-52651566-2	chr13	52651466	52651666	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54684.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	11.31	10.82	3.42	6.44	5.32	7.53	3.32	2.72	12.98	10.04	2.51	9.71
Merged-chr12-102423106-1	chr12	102423006	102423206	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	16707.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.04	2.26	3.42	8.04	2.86	8.15	7.97	11.66	1.18	2.51	5.02	10.02
Merged-chr9-86451825-2	chr9	86451724	86451924	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027394, exon 2 of 10)	exon (NM_027394, exon 2 of 10)	13092.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	1.62	7.04	2.28	5.63	5.73	1.88	8.97	8.05	7.08	3.01	6.53	10.02
Merged-chr1-85591280-1	chr1	85591180	85591380	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030194, intron 4 of 11)	URR1B|DNA|hAT-Charlie	7530.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	6.06	4.28	0.0	2.82	5.32	1.57	3.99	7.51	0.0	0.0	0.0	0.0
Merged-chr12-111593190-1	chr12	111593090	111593290	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	18680.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	20.19	9.06	17.11	15.69	7.36	8.78	4.65	2.27	3.34	2.51	1.0	4.39
Merged-chr3-116638525-1	chr3	116638425	116638625	+	795.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23938.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	2.02	5.03	1.71	0.8	3.68	6.27	2.33	3.48	7.47	11.55	17.59	9.08
Merged-chr5-66319499-1	chr5	66319399	66319599	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	18166.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	2.42	8.8	2.28	2.01	2.45	3.45	7.97	5.58	8.65	4.02	6.03	5.95
Merged-chr19-45658821-1	chr19	45658721	45658921	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	1372.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	9.29	0.5	3.42	6.84	4.5	7.21	2.33	7.46	3.74	10.04	3.01	4.39
Merged-chr1-37466535-1	chr1	37466435	37466635	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 6 of 15)	intron (NM_173870, intron 6 of 15)	22070.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.06	5.03	6.85	4.42	6.55	7.84	1.33	8.66	4.13	1.51	2.51	2.19
Merged-chr17-71711013-2	chr17	71710917	71711117	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177087, intron 14 of 19)	intron (NM_177087, intron 14 of 19)	37756.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	10.5	12.58	18.83	7.24	6.14	5.96	9.63	9.08	3.34	1.0	6.03	4.7
Merged-chr5-67839121-2	chr5	67839009	67839209	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	MTD|LTR|ERVL-MaLR	8322.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.02	5.28	2.85	5.23	5.73	2.2	8.64	8.02	1.77	2.51	3.01	5.64
Merged-chr15-78245393-1	chr15	78245293	78245493	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	582.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	9.69	4.28	15.4	7.24	6.14	9.09	13.62	7.63	6.88	5.52	7.03	4.39
Merged-chr1-125527490-1	chr1	125527390	125527590	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33105.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.4	3.02	0.0	0.0	4.09	10.03	1.0	7.01	2.95	6.03	8.04	1.57
Merged-chr9-68883210-3	chr9	68883118	68883318	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	117872.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	13.33	6.54	34.23	8.04	15.14	13.48	15.28	25.65	15.34	8.03	22.61	6.27
Merged-chr10-66851277-1	chr10	66851177	66851377	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	69107.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	1.21	1.51	1.14	3.22	4.91	3.45	1.99	3.48	3.15	11.55	9.04	2.19
Merged-chr9-95700490-2	chr9	95700385	95700585	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	49873.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	11.71	4.28	11.98	2.41	4.09	12.54	5.31	2.07	12.0	15.06	22.61	4.07
Merged-chr5-112252564-2	chr5	112252467	112252667	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001312884)	promoter-TSS (NM_001312884)	-49.0	NM_021351	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.4	0.5	17.68	9.65	2.05	1.88	8.64	8.78	3.54	0.5	4.52	5.01
Merged-chr13-113266716-1	chr13	113266616	113266816	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57057.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	6.06	8.55	6.85	2.41	3.68	2.2	3.32	6.08	4.92	4.02	4.52	6.27
Merged-chr7-141560616-1	chr7	141560516	141560716	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1564.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	6.06	10.82	4.56	5.63	2.86	5.33	6.31	6.17	6.88	5.52	6.03	8.46
Merged-chr14-103793553-1	chr14	103793453	103793653	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	50148.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	1.21	1.01	0.0	0.4	6.55	4.39	4.65	8.07	3.34	1.51	2.51	1.57
Merged-chr13-37622865-2	chr13	37622784	37622984	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-203154.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.27	3.02	11.98	2.41	6.95	7.21	3.32	8.55	11.6	5.52	8.04	5.95
Merged-chr11-4094542-3	chr11	4094424	4094624	+	794.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026443, intron 1 of 3)	intron (NM_026443, intron 1 of 3)	907.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	9.69	8.55	6.85	10.86	8.59	6.9	9.97	11.07	14.55	13.05	18.59	10.96
Merged-chr16-21702857-3	chr16	21702762	21702962	+	794.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8197.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	12.92	3.52	3.42	6.84	22.09	16.62	17.27	21.22	12.0	9.54	8.54	5.01
Merged-chr3-122372850-2	chr3	122372760	122372960	+	794.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46897.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	4.44	7.04	7.99	14.48	10.64	13.48	14.95	25.71	4.92	1.0	7.03	3.76
Merged-chr1-182528704-3	chr1	182528609	182528809	+	794.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11099.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	28.67	17.36	13.12	10.86	24.14	21.64	6.64	13.99	20.06	12.05	13.06	20.36
Merged-chr15-100227230-2	chr15	100227142	100227342	+	794.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-617.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	8.48	3.52	4.56	7.64	13.09	13.17	5.31	4.63	12.98	21.59	15.07	12.53
Merged-chr7-84591533-3	chr7	84591433	84591633	+	794.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010176, intron 11 of 13)	L1ME3A|LINE|L1	14409.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	16.15	17.86	14.26	6.84	14.73	30.1	7.31	4.99	23.21	20.59	17.08	7.83
Merged-chr9-78522013-3	chr9	78521863	78522063	+	794.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-40239.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	4.85	11.82	9.7	7.64	11.86	14.42	10.63	14.97	12.39	11.05	19.6	11.9
Merged-chr9-53603563-2	chr9	53603468	53603668	+	794.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144784, intron 1 of 11)	intron (NM_144784, intron 1 of 11)	6782.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	10.5	5.53	7.99	4.02	13.09	5.64	4.65	11.52	11.6	8.03	12.06	4.7
Merged-chr1-61638913-3	chr1	61638827	61639027	+	794.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081050, exon 1 of 23)	5' UTR (NM_001081050, exon 1 of 23)	103.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	18.17	11.57	11.41	16.89	42.14	38.57	20.93	42.48	8.26	10.54	18.09	8.14
Merged-chr11-5960775-3	chr11	5960676	5960876	+	794.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	5018.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	5.65	8.55	2.28	8.85	11.05	6.9	14.62	14.58	10.42	8.54	17.08	13.47
Merged-chr10-94919582-5	chr10	94919496	94919696	+	794.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24982.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.65	3.52	5.7	7.64	7.36	6.27	14.62	11.66	13.18	15.57	18.59	12.53
Merged-chr10-54040708-5	chr10	54040619	54040819	+	794.820007	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	35077.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.85	2.01	1.14	0.0	5.73	2.2	5.98	4.63	4.13	3.01	4.52	3.76
Merged-chr5-113670804-1	chr5	113670704	113670904	+	794.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-20414.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.02	4.53	11.98	4.02	10.64	7.84	10.96	7.37	3.54	4.52	4.52	4.07
Merged-chr5-115534417-3	chr5	115534318	115534518	+	794.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25049.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	12.11	10.56	3.42	2.01	12.68	12.23	10.63	2.38	10.62	4.02	2.01	6.58
Merged-chr1-78709333-1	chr1	78709233	78709433	+	794.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50893.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	2.83	3.02	6.28	9.25	6.14	8.15	11.29	7.63	1.38	3.01	2.51	2.19
Merged-chr13-94143452-3	chr13	94143347	94143547	+	794.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85651.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	13.73	17.86	10.84	10.46	26.18	10.35	20.26	19.23	7.67	10.04	10.55	7.83
Merged-chr2-157108395-3	chr2	157108309	157108509	+	794.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 11 of 16)	BGLII_A|LTR|ERVK	21354.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	6.06	13.33	5.7	10.05	11.45	7.84	7.31	8.97	11.41	5.52	13.06	13.47
Merged-chr2-155710722-3	chr2	155710623	155710823	+	794.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145537, intron 8 of 10)	intron (NM_145537, intron 8 of 10)	-18339.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	8.48	6.29	12.55	14.08	5.73	3.76	10.96	9.5	10.42	12.55	15.07	10.02
Merged-chr8-126830118-1	chr8	126830018	126830218	+	794.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18902.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	7.27	3.52	3.99	16.49	7.36	6.27	14.28	21.56	5.7	8.54	7.03	5.95
Merged-chr12-83885220-3	chr12	83885117	83885317	+	794.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	-8405.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.25	7.04	2.28	9.65	15.96	16.93	4.32	3.11	10.23	26.61	7.54	9.71
Merged-chr5-130456732-1	chr5	130456632	130456832	+	794.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	7940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.25	6.79	3.99	3.22	3.27	8.15	5.98	10.85	7.08	4.02	9.55	4.39
Merged-chr9-49109278-1	chr9	49109178	49109378	+	794.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359460, intron 5 of 12)	intron (NM_001359460, intron 5 of 12)	6499.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	4.85	0.25	7.99	4.42	3.68	8.78	6.98	10.43	1.97	2.01	8.54	2.51
Merged-chr8-94804719-2	chr8	94804618	94804818	+	794.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5735.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	4.85	5.28	6.85	2.41	4.91	6.27	4.32	8.55	12.59	8.03	19.09	8.46
Merged-chr4-108387784-2	chr4	108387685	108387885	+	794.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4130.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	4.44	2.01	5.7	2.82	8.18	8.15	2.33	10.93	9.24	1.51	14.07	7.21
Merged-chr9-121265522-2	chr9	121265424	121265624	+	794.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	11648.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	9.69	7.8	9.13	16.09	14.73	13.8	10.63	25.32	9.83	7.03	24.62	2.51
Merged-chr10-88795410-1	chr10	88795310	88795510	+	794.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175158, exon 22 of 62)	exon (NM_175158, exon 22 of 62)	31404.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	2.42	2.01	5.7	6.44	8.18	6.9	7.31	9.9	6.29	2.51	7.03	6.58
Merged-chr2-133554405-1	chr2	133554305	133554505	+	794.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007553, intron 1 of 2)	CpG	2246.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.06	7.55	3.99	4.42	9.82	6.9	8.97	8.94	5.7	4.52	7.03	6.27
Merged-chr17-88123072-2	chr17	88122975	88123175	+	794.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2437.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	5.65	10.06	6.85	2.41	10.23	8.78	1.66	5.69	16.72	16.07	18.09	11.28
Merged-chr12-79356376-3	chr12	79356295	79356495	+	794.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	59044.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	6.46	13.08	9.7	2.82	9.82	26.34	6.98	7.37	27.54	19.08	17.08	19.74
Merged-chr9-58273093-3	chr9	58272991	58273191	+	794.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19927.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	8.48	6.04	11.41	8.04	23.73	15.99	10.63	21.79	9.44	11.55	31.66	17.86
Merged-chr12-12287578-3	chr12	12287480	12287680	+	794.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25441.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	10.09	9.06	13.12	7.24	14.73	10.66	15.28	12.73	13.96	9.54	16.08	9.71
Merged-chr9-70731266-2	chr9	70731156	70731356	+	794.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007399, intron 4 of 15)	L2|LINE|L2	52274.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	5.65	2.52	8.56	9.25	8.59	12.54	6.64	13.07	13.77	9.54	17.59	7.83
Merged-chr7-139249120-3	chr7	139249026	139249226	+	794.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	644.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.85	9.06	3.99	8.45	5.73	12.86	8.64	7.32	14.16	16.57	15.58	7.83
Merged-chr4-49627181-3	chr4	49627088	49627288	+	794.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4872.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	12.11	4.53	13.69	10.86	17.18	5.02	4.32	7.18	12.0	18.58	14.57	4.39
Merged-chr12-36041894-3	chr12	36041813	36042013	+	794.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	565.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	8.48	10.06	8.56	13.27	13.91	12.23	8.97	13.35	9.05	6.53	8.54	5.95
Merged-chr14-51062958-2	chr14	51062860	51063060	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5718.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	12.11	5.79	10.84	7.24	13.5	12.23	12.29	15.45	17.31	6.53	8.04	7.52
Merged-chr10-95671295-1	chr10	95671195	95671395	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107149.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	3.63	4.53	6.28	3.62	15.55	10.35	4.98	5.52	6.49	5.02	4.02	4.39
Merged-chr11-110372378-2	chr11	110372267	110372467	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-26735.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	1.62	2.77	0.0	4.42	6.55	2.51	2.99	4.85	7.87	11.05	14.07	6.58
Merged-chr11-117878029-1	chr11	117877929	117878129	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4503.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	1.21	3.02	2.28	2.82	7.36	4.39	4.65	10.49	4.33	1.0	0.5	2.19
Merged-chr10-117824414-2	chr10	117824288	117824488	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 2 of 7)	ID_B1|SINE|B4	21586.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.65	5.28	5.13	1.61	13.09	15.99	4.98	3.06	7.67	9.04	8.04	4.07
Merged-chr10-20785372-1	chr10	20785272	20785472	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60294.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.04	3.52	3.42	3.62	4.91	6.9	6.98	8.61	4.92	4.52	5.02	10.34
Merged-chr2-59246330-1	chr2	59246230	59246430	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	URR1B|DNA|hAT-Charlie	85480.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.04	0.5	2.28	8.04	7.36	8.15	7.97	11.44	3.93	0.5	9.55	3.76
Merged-chr11-107786739-2	chr11	107786630	107786830	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019431, intron 1 of 3)	intron (NM_019431, intron 1 of 3)	7964.0	NM_019431	54377.0	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	15.75	10.56	6.85	6.44	4.09	7.21	6.98	5.97	9.05	4.02	8.04	4.39
Merged-chr17-50388947-3	chr17	50388859	50389059	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95339.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	8.48	9.06	7.42	8.04	6.95	4.39	4.65	15.08	50.35	46.7	50.75	32.27
Merged-chr9-42124359-3	chr9	42124264	42124464	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011436)	promoter-TSS (NM_011436)	-67.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	14.13	8.3	15.4	18.5	8.18	7.53	12.29	13.32	20.46	10.04	28.14	6.89
Merged-chr2-45692954-2	chr2	45692860	45693060	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3645.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	2.01	17.59	8.47	15.94	24.28	10.23	12.05	15.07	9.08
Merged-chr13-24515552-1	chr13	24515452	24515652	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66637.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	7.67	1.01	5.7	4.02	6.14	5.64	6.31	8.86	4.92	4.52	5.53	3.76
Merged-chr3-19955733-2	chr3	19955630	19955830	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1324.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	10.9	9.31	5.13	1.61	2.05	20.07	3.99	5.3	7.87	6.53	8.04	6.58
Merged-chr1-20817374-2	chr1	20817315	20817515	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008563, exon 3 of 17)	exon (NM_008563, exon 3 of 17)	2897.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	3.63	9.56	5.7	5.23	4.91	17.56	18.27	8.47	5.51	5.52	16.08	8.14
Merged-chr12-24710823-2	chr12	24710660	24710860	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009104, intron 5 of 9)	B3|SINE|B2	2506.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	5.65	8.05	3.42	7.24	7.77	5.64	7.64	5.16	5.31	8.03	13.06	7.21
Merged-chr3-121819975-3	chr3	121819879	121820079	+	794.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4677.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	11.71	4.28	15.97	7.64	5.73	4.39	6.64	11.41	19.87	18.08	14.57	12.53
Merged-chr13-63108785-2	chr13	63108685	63108885	+	794.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-131244.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	7.27	7.8	7.99	18.5	9.41	2.82	18.93	34.71	1.18	1.51	4.02	1.57
Merged-chr6-76266873-1	chr6	76266773	76266973	+	794.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-975604.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	3.23	1.51	0.0	3.62	11.86	15.68	7.97	13.35	5.11	7.53	3.52	0.63
Merged-chr11-98955277-3	chr11	98955172	98955372	+	794.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5199.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	8.48	10.31	19.97	4.02	10.23	5.33	6.64	10.51	9.83	5.52	9.04	8.14
Merged-chr16-35986553-3	chr16	35986454	35986654	+	794.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	3191.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	18.17	8.05	13.12	10.46	13.5	15.05	19.93	20.97	8.85	4.52	14.57	8.77
Merged-chr13-20157792-3	chr13	20157705	20157905	+	794.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	67298.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.88	4.78	17.11	14.48	17.18	8.47	11.63	11.13	10.62	2.51	12.06	10.34
Merged-chr7-43681185-3	chr7	43681084	43681284	+	794.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9153.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	5.65	7.04	6.85	6.44	3.27	14.11	7.31	10.32	17.51	16.57	15.07	10.02
Merged-chr2-118591173-2	chr2	118591062	118591262	+	794.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7049.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	10.5	7.8	5.13	7.24	2.05	15.68	3.32	2.89	14.95	22.59	13.06	6.27
Merged-chr3-116327472-3	chr3	116327367	116327567	+	794.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 7 of 13)	intron (NM_001173553, intron 7 of 13)	26777.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	12.52	7.04	14.83	16.09	10.23	12.86	4.32	16.88	13.18	16.07	15.07	5.01
Merged-chrX-140600859-2	chrX	140600667	140600867	+	794.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077364)	promoter-TSS (NM_001077364)	-245.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	2.83	1.26	0.0	6.03	0.82	0.94	1.0	1.43	3.74	3.01	0.5	1.88
Merged-chr6-38952657-2	chr6	38952565	38952765	+	794.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	33679.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.81	4.78	10.84	4.02	10.23	24.15	7.64	9.31	12.39	11.05	10.55	3.76
Merged-chr4-86899398-1	chr4	86899298	86899498	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24984.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.63	1.26	6.28	10.05	8.18	6.27	4.65	12.5	3.15	2.01	2.51	4.39
Merged-chr8-120576476-1	chr8	120576376	120576576	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198671, exon 14 of 16)	exon (NM_198671, exon 14 of 16)	12599.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.04	5.03	3.42	7.24	11.86	13.17	9.97	6.62	3.34	5.52	6.03	4.07
Merged-chr19-38837415-3	chr19	38837276	38837476	+	794.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001362424, exon 1 of 11)	exon (NM_001362424, exon 1 of 11)	797.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	8.08	8.05	14.26	12.07	9.82	5.33	16.94	11.19	6.69	4.52	10.55	7.83
Merged-chr1-180429074-1	chr1	180428974	180429174	+	794.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54430.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.63	5.03	8.56	0.4	5.73	7.21	6.98	3.81	11.6	10.54	12.06	5.64
Merged-chr17-51788347-3	chr17	51788203	51788403	+	794.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	23751.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.23	11.82	3.42	2.01	13.09	4.39	3.99	7.12	4.92	8.54	3.01	5.33
Merged-chr10-98937914-1	chr10	98937814	98938014	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	22762.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.85	2.77	11.41	4.02	13.09	10.35	6.64	12.48	8.26	2.01	6.53	4.7
Merged-chr11-20202919-3	chr11	20202820	20203020	+	794.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	9.69	11.07	7.42	5.23	13.91	12.54	5.65	11.1	13.18	12.55	7.54	11.28
Merged-chr7-27574311-1	chr7	27574211	27574411	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175107, intron 7 of 9)	intron (NM_175107, intron 7 of 9)	13835.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	2.42	1.51	2.28	0.8	3.27	8.78	6.31	7.82	4.13	11.05	4.02	7.21
Merged-chr19-47580320-3	chr19	47580227	47580427	+	794.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009289, exon 1 of 19)	exon (NM_009289, exon 1 of 19)	308.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	15.75	6.79	0.0	2.41	4.91	14.74	6.98	4.71	10.03	3.51	6.53	3.45
Merged-chr19-10277391-3	chr19	10277166	10277366	+	794.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	27611.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.63	0.75	3.42	8.04	4.5	3.45	2.66	6.67	1.97	3.51	1.51	5.64
Merged-chr11-17051708-5	chr11	17051640	17051840	+	794.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029861)	promoter-TSS (NM_029861)	-194.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	5.25	6.79	5.7	20.11	9.82	7.53	7.64	9.53	9.64	7.53	14.57	6.58
Merged-chr3-9610185-2	chr3	9610080	9610280	+	794.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-95.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	7.67	6.04	3.42	14.08	5.32	12.86	6.98	17.83	10.42	11.05	21.61	10.02
Merged-chr1-59238034-4	chr1	59237915	59238115	+	794.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-784.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	8.88	11.32	2.28	8.45	11.05	4.08	4.65	4.91	8.26	13.56	5.02	13.47
Merged-chr18-37933262-3	chr18	37933181	37933381	+	794.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	2195.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	12.92	9.06	10.27	17.29	20.05	11.92	10.3	12.95	7.67	16.07	12.56	6.58
Merged-chr13-98890440-3	chr13	98890359	98890559	+	794.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 2 of 23)	intron (NM_178716, intron 2 of 23)	583.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	7.67	11.57	6.85	8.85	9.82	18.19	11.63	18.87	9.24	13.56	12.56	5.33
Merged-chr2-163401442-3	chr2	163401330	163401530	+	794.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3437.0	NM_001205076	59091.0	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	9.29	11.82	14.83	9.25	5.32	12.86	3.65	6.0	19.67	3.51	18.09	6.89
Merged-chr9-7569147-2	chr9	7569045	7569245	+	794.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008611)	TTS (NM_008611)	-2251.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	4.85	5.53	3.42	5.63	6.55	6.9	22.26	16.04	12.78	8.54	11.05	5.64
Merged-chr11-57980495-2	chr11	57980409	57980609	+	794.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28555.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.04	6.29	0.57	1.21	4.09	7.84	7.31	4.99	16.72	4.52	19.09	15.66
Merged-chr9-63756901-2	chr9	63756812	63757012	+	794.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	1082.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.06	2.52	5.7	9.65	4.91	6.27	7.31	7.99	8.46	3.51	6.53	5.64
Merged-chr13-33952255-3	chr13	33952114	33952314	+	794.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-12445.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	4.04	3.52	13.12	8.04	6.14	5.33	10.3	14.58	8.46	6.03	13.06	5.64
Merged-chr5-148634161-1	chr5	148634061	148634261	+	794.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81373.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.81	1.51	2.85	0.0	1.64	2.51	3.32	0.9	27.73	18.58	16.58	9.4
Merged-chr11-100994788-3	chr11	100994620	100994820	+	794.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-14732.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	6.86	5.79	3.42	6.44	8.59	8.15	2.99	2.44	13.57	8.03	7.03	4.7
Merged-chr17-34355173-3	chr17	34355076	34355276	+	794.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 1 of 8)	intron (NM_079835, intron 1 of 8)	354.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	16.15	23.39	16.54	9.25	18.41	5.64	4.98	7.01	24.78	23.6	22.61	10.02
Merged-chr16-22116270-3	chr16	22116162	22116362	+	794.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	MTD|LTR|ERVL-MaLR	47037.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	10.5	5.28	13.69	6.03	11.05	10.35	12.62	12.08	27.93	12.55	15.58	22.24
Merged-chr16-29607295-3	chr16	29607207	29607407	+	794.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27973.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	15.75	6.79	12.55	10.86	27.82	31.36	12.95	30.03	7.08	12.55	22.11	5.64
Merged-chr4-133875279-1	chr4	133875179	133875379	+	794.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	-548.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.88	4.02	7.42	3.22	11.86	13.17	10.3	6.39	2.16	3.51	1.0	1.25
Merged-chr5-108566699-1	chr5	108566599	108566799	+	794.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16672.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	9.29	5.03	9.13	15.69	7.77	9.72	8.3	12.08	5.31	2.01	10.55	4.39
Merged-chr19-21037671-2	chr19	21037593	21037793	+	794.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67017.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.46	4.28	9.7	8.45	8.18	13.8	11.96	7.93	6.69	8.03	10.05	5.33
Merged-chr18-70495102-2	chr18	70495007	70495207	+	794.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289650, intron 6 of 8)	RMER15|LTR|ERVL	-21679.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	5.25	1.76	13.12	4.83	9.41	9.41	6.64	7.35	17.9	11.05	9.04	13.16
Merged-chr11-114929257-2	chr11	114929213	114929413	+	794.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	5073.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	11.31	10.82	5.13	2.41	8.18	3.76	2.99	4.46	3.54	3.01	3.52	0.63
Merged-chr2-125792703-2	chr2	125792667	125792867	+	794.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9897.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	4.04	2.77	9.13	2.82	1.64	5.33	4.65	4.21	7.08	12.05	6.03	5.95
Merged-chr11-118424846-2	chr11	118424736	118424936	+	794.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3621.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	13.33	11.32	7.42	12.47	6.55	5.64	6.64	8.64	5.51	8.03	4.52	11.28
Merged-chr2-102883167-2	chr2	102883081	102883281	+	794.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	18484.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.5	10.56	14.26	5.63	5.73	20.07	3.65	3.56	17.11	17.57	14.07	2.19
Merged-chr8-68348629-2	chr8	68348530	68348730	+	794.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028182)	TTS (NM_028182)	-19829.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	6.46	1.01	5.13	7.24	10.64	5.64	12.29	19.57	13.37	12.55	19.09	14.41
Merged-chr17-27178244-2	chr17	27178124	27178324	+	794.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-10460.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	14.94	7.29	10.84	5.23	17.18	10.03	6.31	13.12	8.46	11.55	5.02	7.21
Merged-chr15-79071773-3	chr15	79071678	79071878	+	794.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3445.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	16.15	7.55	13.69	4.02	5.32	11.29	3.32	9.59	11.21	8.54	14.07	15.35
Merged-chr5-86086953-2	chr5	86086807	86087007	+	794.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 4 of 7)	intron (NM_001310639, intron 4 of 7)	15161.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	3.23	4.53	4.56	4.42	6.14	6.59	4.98	4.85	14.75	5.02	8.04	6.27
Merged-chr16-57495908-2	chr16	57495826	57496026	+	794.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-53316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.85	5.03	10.84	8.45	3.68	12.54	6.31	10.6	4.52	10.54	5.02	9.08
Merged-chr4-135891701-3	chr4	135891592	135891792	+	794.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-3497.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	15.34	8.55	11.41	16.89	15.14	9.41	1.33	9.87	19.67	14.56	5.02	10.34
Merged-chr5-146675398-3	chr5	146675298	146675498	+	794.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90159.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	12.92	8.05	4.56	12.07	10.23	6.9	3.32	7.21	10.82	9.54	21.61	9.71
Merged-chr1-43110725-3	chr1	43110647	43110847	+	794.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133818, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	12037.0	NM_133818	98404.0	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	8.48	10.31	7.42	8.85	19.23	15.37	13.62	15.9	18.88	5.52	13.06	11.28
Merged-chr7-16104166-3	chr7	16104075	16104275	+	794.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	5595.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	8.08	8.8	7.99	14.48	13.5	17.87	9.3	11.58	10.62	10.54	8.54	8.46
Merged-chr2-156686686-1	chr2	156686586	156686786	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146128, intron 2 of 12)	intron (NM_146128, intron 2 of 12)	34223.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	4.04	0.0	2.28	2.82	1.64	9.72	1.0	7.77	2.75	1.0	0.0	1.88
Merged-chr19-56253513-2	chr19	56253443	56253643	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34369.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	11.31	9.06	24.53	8.85	11.45	5.96	1.66	8.55	5.11	2.01	7.54	2.19
Merged-chr8-84064049-2	chr8	84063950	84064150	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2786.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	8.08	3.02	3.42	1.61	0.82	5.33	3.32	7.6	16.13	4.02	10.55	10.65
Merged-chr11-17538417-1	chr11	17538317	17538517	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	280729.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.81	0.0	0.57	0.4	6.14	3.14	4.65	9.08	2.56	0.5	4.52	1.25
Merged-chr16-45197024-1	chr16	45196924	45197124	+	794.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27313.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.42	3.27	1.14	4.02	2.05	6.9	1.33	3.31	12.98	2.01	13.57	3.76
Merged-chr10-128902597-1	chr10	128902497	128902697	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6322.0	NM_001042580	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	3.23	4.28	3.42	8.85	2.05	5.02	8.64	13.35	4.13	3.01	5.53	4.39
Merged-chrX-7294243-1	chrX	7294143	7294343	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	25115.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.4	3.02	2.28	4.02	6.14	5.64	5.65	5.89	3.93	2.01	2.01	0.63
Merged-chr8-80242811-1	chr8	80242711	80242911	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-184803.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	1.62	2.01	0.0	5.63	3.27	4.39	7.97	7.96	2.95	7.03	5.02	1.57
Merged-chr10-85874227-2	chr10	85874081	85874281	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	2350.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	2.42	2.52	3.42	3.62	13.91	15.99	10.3	4.51	9.83	7.53	6.03	4.7
Merged-chr1-179704470-1	chr1	179704370	179704570	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	36239.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	12.52	3.27	1.71	11.26	1.64	3.14	1.99	0.42	0.59	3.01	2.01	1.57
Merged-chr2-118295661-1	chr2	118295561	118295761	+	794.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	-9253.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	0.0	0.5	1.71	0.0	0.82	0.0	1.66	2.92	7.87	6.53	16.58	9.08
Merged-chr7-24618548-1	chr7	24618448	24618648	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001102613, intron 5 of 14)	intron (NM_001102613, intron 5 of 14)	7220.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	4.04	13.58	19.97	6.44	7.36	10.03	0.0	4.71	19.47	4.52	7.03	5.01
Merged-chr3-156560907-3	chr3	156560803	156561003	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177274)	promoter-TSS (NM_177274)	784.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	3.63	8.3	13.69	3.62	3.27	1.57	7.64	6.14	21.24	8.54	30.65	12.53
Merged-chr14-13130855-1	chr14	13130755	13130955	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3a|LINE|L1	153783.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.81	1.26	0.0	7.64	2.45	8.15	5.65	13.99	1.18	3.01	3.01	4.07
Merged-chr6-124966146-2	chr6	124966029	124966229	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164089)	promoter-TSS (NM_001164089)	-591.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	4.44	1.76	4.56	6.44	11.86	6.9	2.66	3.11	11.41	6.03	19.09	12.22
Merged-chr9-21134837-1	chr9	21134737	21134937	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3562.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	1.62	6.04	7.42	0.0	3.68	9.09	1.66	6.79	5.11	6.03	9.04	7.21
Merged-chr1-128811061-1	chr1	128810961	128811161	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-218762.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.81	1.01	7.99	1.61	7.36	4.39	2.99	9.0	9.05	3.51	4.02	5.33
Merged-chr13-111647479-1	chr13	111647379	111647579	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38699.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	4.44	3.02	3.99	10.05	0.82	3.14	5.98	6.22	0.98	3.51	4.02	2.82
Merged-chr1-156450318-2	chr1	156450208	156450408	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	24020.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.25	8.3	10.27	12.87	18.41	17.56	7.64	12.48	0.59	1.0	2.01	3.45
Merged-chr18-5187009-3	chr18	5186914	5187114	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21283.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	14.94	7.8	15.4	15.28	15.14	11.29	14.95	24.25	9.05	2.01	11.05	8.46
Merged-chr4-47248472-2	chr4	47248400	47248600	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009928, intron 4 of 39)	intron (NM_009928, intron 4 of 39)	40488.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	8.08	5.03	0.0	3.62	3.68	0.94	3.65	4.32	3.15	2.51	1.51	6.89
Merged-chrY-90740421-2	chrY	90740323	90740523	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14627.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	1.62	2.77	0.0	0.8	2.05	1.88	2.33	1.82	79.46	83.35	88.94	44.17
Merged-chr7-96879051-1	chr7	96878951	96879151	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-72476.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	6.06	18.36	7.42	1.61	7.36	7.84	5.65	7.4	1.57	4.02	4.02	3.76
Merged-chr13-24938891-1	chr13	24938791	24938991	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_102323, exon 2 of 2)	non-coding (NR_102323, exon 2 of 2)	-1230.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	4.44	3.52	3.99	3.22	3.68	7.21	7.97	7.18	4.13	2.51	4.02	4.07
Merged-chr18-46473976-4	chr18	46473872	46474072	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	-8156.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	21.0	16.1	9.7	5.63	43.36	48.29	38.2	26.07	9.24	20.59	11.56	6.27
Merged-chr19-56396351-1	chr19	56396251	56396451	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-778.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	3.23	2.26	6.85	3.22	4.91	6.59	3.99	7.09	10.42	3.51	7.54	2.51
Merged-chr10-5256904-1	chr10	5256804	5257004	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001347732, exon 64 of 146)	exon (NM_001347732, exon 64 of 146)	-62197.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	5.65	3.52	5.7	5.63	10.23	5.02	4.98	7.4	2.75	0.0	3.01	2.51
Merged-chr7-73619221-1	chr7	73619121	73619321	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60826.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.48	8.05	2.28	2.82	16.77	10.35	11.63	5.78	9.64	13.05	10.05	6.58
Merged-chr8-11118159-1	chr8	11118059	11118259	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109729.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	13.73	4.02	11.41	8.85	9.0	8.78	11.29	19.01	4.52	2.01	10.55	2.19
Merged-chr8-70152661-1	chr8	70152561	70152761	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001045484)	promoter-TSS (NM_001045484)	-100.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	4.04	5.03	11.98	8.04	12.27	4.7	5.98	9.25	9.83	5.52	21.61	8.14
Merged-chr17-5830138-2	chr17	5830017	5830217	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11263.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	11.31	5.28	5.7	13.27	8.59	6.27	4.32	13.74	8.85	6.03	9.04	2.51
Merged-chr6-145866139-2	chr6	145866091	145866291	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-771.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	6.86	8.55	7.42	15.69	12.27	24.77	35.87	27.03	5.9	7.53	5.53	10.96
Merged-chr1-24378695-1	chr1	24378595	24378795	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007733, intron 15 of 50)	intron (NM_007733, intron 15 of 50)	183492.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	2.83	1.01	3.99	6.44	1.64	1.57	5.98	8.21	2.56	4.52	12.56	4.39
Merged-chr7-96524024-2	chr7	96523925	96524125	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-182061.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.63	4.53	12.55	11.66	2.86	1.88	6.31	10.04	0.2	0.0	4.52	1.88
Merged-chr4-34797735-1	chr4	34797635	34797835	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19369.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	4.85	3.77	2.85	1.61	4.09	5.64	9.63	8.27	14.16	1.0	8.04	7.83
Merged-chr16-23234741-3	chr16	23234634	23234834	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8713.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	10.09	9.81	17.11	18.1	9.0	7.53	7.31	11.92	10.62	14.06	23.11	7.83
Merged-chr2-6565922-1	chr2	6565822	6566022	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	155740.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.02	2.01	1.14	6.44	1.23	2.51	5.98	10.96	4.72	3.01	9.55	5.64
Merged-chr5-124538980-2	chr5	124538892	124539092	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-1799.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	4.85	8.8	6.85	5.23	3.27	7.53	6.64	9.42	7.67	5.02	12.06	6.58
Merged-chr11-101610564-1	chr11	101610464	101610664	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256318)	promoter-TSS (NM_001256318)	-136.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	3.63	2.77	0.0	4.42	6.95	3.45	3.65	7.09	6.49	2.51	6.03	3.45
Merged-chr3-90465419-1	chr3	90465319	90465519	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008727, exon 1 of 22)	exon (NM_008727, exon 1 of 22)	447.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	9.29	6.79	3.99	6.84	6.14	4.7	9.97	3.98	8.06	2.01	3.52	2.19
Merged-chr4-59222459-1	chr4	59222359	59222559	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011673, exon 9 of 9)	3' UTR (NM_011673, exon 9 of 9)	32909.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.63	2.52	2.85	5.23	4.09	0.94	5.31	7.88	2.56	4.02	0.5	3.76
Merged-chr11-106354274-1	chr11	106354174	106354374	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4884.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	9.29	1.51	1.71	5.23	6.14	7.53	8.3	8.97	3.34	8.54	13.06	7.21
Merged-chr17-27977235-2	chr17	27977130	27977330	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286041, intron 3 of 23)	intron (NM_001286041, intron 3 of 23)	67924.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.25	2.26	8.56	14.48	13.5	14.74	27.9	37.37	0.0	0.0	2.01	0.0
Merged-chr7-127557894-3	chr7	127557790	127557990	+	793.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304266, intron 33 of 33)	intron (NM_001304266, intron 33 of 33)	-3333.0	NM_001304267	105180375.0	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	14.94	7.29	13.69	12.07	7.77	8.78	6.98	12.0	11.21	3.51	26.13	9.08
Merged-chr10-122953683-2	chr10	122953589	122953789	+	793.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	32035.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	1.21	4.02	3.42	8.45	9.0	6.59	6.98	5.72	23.41	19.58	34.17	15.35
Merged-chr17-51382758-2	chr17	51382655	51382855	+	793.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	65514.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	6.46	2.77	8.56	8.85	5.32	6.27	2.66	8.13	17.31	11.05	16.58	4.7
Merged-chr10-60283668-2	chr10	60283583	60283783	+	793.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-778.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.04	2.52	7.99	10.05	10.23	5.33	7.31	12.2	10.23	7.53	19.6	8.77
Merged-chr17-8372063-2	chr17	8371947	8372147	+	793.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001161832)	promoter-TSS (NM_001161832)	-349.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	10.5	3.27	6.28	12.07	13.09	8.15	5.31	9.17	7.28	4.02	9.55	3.45
Merged-chr17-3205112-2	chr17	3205022	3205222	+	793.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90150.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	10.5	7.8	13.12	11.66	9.82	11.6	11.96	18.03	7.67	7.03	4.02	1.88
Merged-chrX-99523440-2	chrX	99523348	99523548	+	793.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52713.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	8.88	3.27	13.69	10.05	12.68	12.23	10.3	14.52	5.51	8.03	13.57	6.58
Merged-chr5-36466084-2	chr5	36465985	36466185	+	793.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024478, intron 1 of 3)	intron (NM_024478, intron 1 of 3)	900.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	6.46	3.27	3.99	4.83	7.36	8.47	5.65	10.37	12.39	12.05	13.06	10.02
Merged-chr1-160211809-3	chr1	160211681	160211881	+	793.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	1111.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	10.09	9.56	10.84	6.03	22.91	20.7	15.61	31.51	9.44	9.04	19.09	8.14
Merged-chr19-44280952-1	chr19	44280852	44281052	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12724.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.44	11.32	0.57	3.22	10.23	12.23	6.98	9.31	2.56	1.51	1.0	3.13
Merged-chr7-80077918-1	chr7	80077818	80078018	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	ID_B1|SINE|B4	-2661.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.25	4.28	3.99	0.8	9.82	7.84	7.64	2.24	4.13	5.02	7.03	5.95
Merged-chr7-16223125-1	chr7	16223025	16223225	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	10.09	3.27	6.28	3.62	12.27	8.78	14.62	9.14	2.36	2.01	1.0	2.19
Merged-chr17-83675593-3	chr17	83675489	83675689	+	793.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-30574.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.27	7.55	12.55	8.45	14.32	8.15	8.64	16.85	10.03	14.06	20.6	19.42
Merged-chr1-165643887-1	chr1	165643787	165643987	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9346.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	11.71	3.52	2.28	6.84	7.36	7.84	8.97	11.72	6.29	6.53	2.01	4.7
Merged-chr1-43561324-3	chr1	43561231	43561431	+	793.794434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 4 of 4)	intron (NM_010879, intron 4 of 4)	115580.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	18.17	7.8	23.96	17.29	6.95	12.86	14.28	22.51	11.6	12.05	9.04	9.4
Merged-chr11-106751659-3	chr11	106751562	106751762	+	793.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271372, exon 2 of 7)	exon (NM_001271372, exon 2 of 7)	436.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	15.75	12.32	14.83	19.31	15.14	10.66	9.63	10.65	22.82	10.54	5.53	7.21
Merged-chr6-129344609-3	chr6	129344502	129344702	+	793.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A3|LTR|ERVK	-5642.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	10.9	6.79	7.42	7.64	10.23	12.23	16.94	15.53	15.54	17.07	20.1	14.41
Merged-chr16-23376354-3	chr16	23376255	23376455	+	793.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52778.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	10.5	4.78	11.41	16.89	9.41	6.9	8.3	11.07	9.05	13.56	16.08	10.65
Merged-chr7-120883913-4	chr7	120883814	120884014	+	793.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267710, intron 6 of 17)	B1_Mus2|SINE|Alu	32725.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	10.09	12.32	21.11	11.66	9.82	3.14	8.64	7.85	5.11	7.53	7.54	4.07
Merged-chrX-47913180-2	chrX	47913086	47913286	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177215, intron 2 of 23)	intron (NM_177215, intron 2 of 23)	730.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	8.08	13.58	4.56	6.03	14.32	7.21	10.63	8.44	1.97	12.55	9.04	8.46
Merged-chr14-9660061-2	chr14	9659947	9660147	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	L1_Mus3|LINE|L1	-224048.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.44	8.55	5.13	5.63	0.82	10.03	7.97	6.67	10.42	9.04	15.07	10.65
Merged-chr12-64976158-2	chr12	64976061	64976261	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177805, intron 1 of 19)	intron (NM_177805, intron 1 of 19)	10419.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	6.06	6.54	4.56	4.02	11.86	3.45	3.32	9.28	11.8	10.04	3.01	10.65
Merged-chr8-80319095-1	chr8	80318995	80319195	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-174950.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.81	2.77	2.85	6.03	11.05	6.9	5.31	8.02	1.57	4.52	4.52	3.76
Merged-chr6-134211490-2	chr6	134211395	134211595	+	793.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	175795.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.08	4.78	12.55	10.86	8.18	3.45	9.63	9.81	0.79	2.51	2.01	4.07
Merged-chr10-121689768-1	chr10	121689668	121689868	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177335, intron 11 of 12)	intron (NM_177335, intron 11 of 12)	48067.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	5.25	5.03	6.85	2.01	9.82	13.17	8.3	8.33	7.87	5.52	10.05	7.52
Merged-chr11-17170158-1	chr11	17170058	17170258	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	10860.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	2.42	4.28	11.98	6.03	8.18	3.45	4.65	11.61	3.15	3.01	9.04	5.95
Merged-chr12-69373105-2	chr12	69373086	69373286	+	793.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007481, exon 2 of 2)	exon (NM_007481, exon 2 of 2)	1036.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	4.04	1.76	5.13	10.46	4.09	4.08	6.64	3.73	10.42	10.54	20.1	3.45
Merged-chr11-94564560-3	chr11	94564448	94564648	+	793.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007689)	promoter-TSS (NM_007689)	-499.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	9.69	11.07	19.97	13.67	16.36	19.44	6.98	11.02	12.78	7.03	16.58	5.95
Merged-chr2-120036388-3	chr2	120036289	120036489	+	793.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104353, exon 15 of 27)	non-coding (NR_104353, exon 15 of 27)	2956.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	16.15	5.28	6.85	12.47	6.55	5.02	3.99	8.36	12.98	12.05	16.58	15.04
Merged-chr1-94658401-3	chr1	94658276	94658476	+	793.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-139066.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	6.06	3.02	12.55	14.08	15.14	15.99	17.94	31.43	11.6	6.03	15.07	5.64
Merged-chr1-125468107-3	chr1	125468003	125468203	+	793.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32376.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	17.36	5.79	10.84	6.84	11.45	8.78	5.31	14.02	22.62	20.08	11.05	10.02
Merged-chr9-58583248-3	chr9	58583107	58583307	+	793.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	967.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	9.29	6.79	7.99	4.42	9.41	10.66	6.64	6.42	18.1	7.53	12.56	16.92
Merged-chr1-89524587-3	chr1	89524507	89524707	+	793.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	69796.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	13.73	9.31	13.12	10.46	30.27	12.23	7.97	21.59	22.62	14.06	22.11	9.08
Merged-chr3-9881124-3	chr3	9881028	9881228	+	793.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-47449.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	7.67	6.79	5.7	5.63	15.55	7.21	7.31	5.97	26.16	15.06	43.72	10.65
Merged-chr1-162838097-1	chr1	162837997	162838197	+	793.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010231, intron 5 of 8)	intron (NM_010231, intron 5 of 8)	21903.0	NM_001330291	14261.0	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.0	0.5	0.0	0.0	2.86	9.72	4.65	14.86	1.18	0.0	0.0	1.88
Merged-chr17-32280732-3	chr17	32280603	32280803	+	793.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	3420.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	19.38	6.54	6.85	11.26	22.91	11.92	12.62	5.13	14.36	9.54	13.57	6.27
Merged-chr11-103413283-1	chr11	103413183	103413383	+	793.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	-619.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.85	2.26	1.14	1.61	8.18	8.47	3.99	7.65	8.85	6.03	5.53	12.84
Merged-chr14-70932151-1	chr14	70932051	70932251	+	793.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	42044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.25	3.02	6.85	3.22	9.0	10.35	9.97	9.25	2.56	3.51	4.52	3.13
Merged-chr9-120083300-3	chr9	120083206	120083406	+	793.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-8827.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	10.5	4.78	5.7	13.67	9.41	16.62	7.64	10.26	15.74	10.04	21.1	10.34
Merged-chr10-19613302-2	chr10	19613195	19613395	+	793.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-8733.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	6.86	2.52	14.83	13.67	9.82	9.09	7.64	12.31	7.87	6.03	4.52	4.07
Merged-chr10-75484880-2	chr10	75484781	75484981	+	793.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32500.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.86	7.8	11.98	5.63	11.05	12.86	1.99	10.29	3.54	8.54	16.58	6.27
Merged-chr11-72411762-2	chr11	72411660	72411860	+	793.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177776)	promoter-TSS (NM_177776)	-47.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	16.15	6.29	9.13	8.45	7.36	7.53	5.98	8.44	7.28	3.51	9.04	7.52
Merged-chr4-136118651-2	chr4	136118555	136118755	+	793.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25167.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.08	9.31	5.13	2.41	12.68	14.42	4.98	9.0	12.98	11.55	10.05	1.88
Merged-chr16-44832472-3	chr16	44832370	44832570	+	793.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207244, intron 2 of 5)	intron (NM_207244, intron 2 of 5)	11742.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	8.88	6.79	7.42	13.67	15.55	8.78	14.95	13.23	17.31	8.03	12.56	12.53
Merged-chr15-9111139-3	chr15	9111038	9111238	+	793.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285980)	TTS (NM_001285980)	29316.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	8.48	11.32	18.25	15.28	19.64	8.47	6.64	16.37	12.39	8.54	12.06	12.22
Merged-chr3-60320382-2	chr3	60320282	60320482	+	793.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-152448.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	8.08	2.01	5.7	3.22	2.86	7.84	5.31	8.66	12.98	9.54	16.08	3.13
Merged-chrX-20820220-3	chrX	20820130	20820330	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28313.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	6.06	6.29	11.98	9.65	9.0	9.72	2.99	7.93	13.96	7.53	18.09	8.14
Merged-chr11-69415070-3	chr11	69415009	69415209	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1434.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.48	7.8	6.85	6.03	12.27	9.72	5.98	5.41	10.62	13.56	18.09	11.28
Merged-chr11-53825599-3	chr11	53825503	53825703	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	33653.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	10.9	8.55	10.84	6.03	0.82	5.96	5.65	11.19	18.49	16.07	19.6	10.96
Merged-chr3-94565725-3	chr3	94565627	94565827	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	16989.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	10.09	13.08	16.54	2.41	10.64	31.67	1.0	5.41	12.39	10.04	2.01	0.0
Merged-chr15-31367383-6	chr15	31367324	31367524	+	793.5361330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026153, exon 1 of 2)	5' UTR (NM_026153, exon 1 of 2)	335.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	13.73	7.55	7.99	6.84	8.59	10.03	16.28	8.24	5.7	6.03	7.54	5.33
Merged-chr4-124741832-3	chr4	124741744	124741944	+	793.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126474)	promoter-TSS (NR_126474)	-6.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	16.56	5.28	6.85	2.82	4.91	13.17	6.31	9.11	9.24	11.05	22.61	8.77
Merged-chr2-122381175-2	chr2	122381067	122381267	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12249.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	5.65	11.32	10.27	4.02	5.32	5.02	2.66	9.45	9.44	15.06	8.04	11.59
Merged-chr9-62421281-1	chr9	62421181	62421381	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175484, exon 12 of 12)	3' UTR (NM_175484, exon 12 of 12)	79938.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.81	0.5	0.0	0.0	9.41	9.72	4.32	8.72	1.77	4.02	0.0	5.33
Merged-chr3-8990556-2	chr3	8990442	8990642	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13662.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.06	4.78	10.27	12.07	11.05	3.45	3.99	13.96	6.29	13.56	11.56	9.71
Merged-chr9-25073086-1	chr9	25072986	25073186	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78695.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.81	0.75	0.0	3.22	2.86	5.02	2.33	3.17	1.18	1.51	2.51	1.57
Merged-chrX-155624769-1	chrX	155624669	155624869	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1442.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	1.21	4.02	5.7	6.03	9.41	6.9	7.31	3.03	2.75	4.02	11.56	4.39
Merged-chr18-60908249-3	chr18	60908159	60908359	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3981.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	13.33	2.77	18.25	4.02	5.73	6.59	5.31	13.6	7.28	7.53	14.07	7.52
Merged-chr5-99244211-2	chr5	99244178	99244378	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	B1_Mur3|SINE|Alu	8649.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.21	7.8	3.99	2.41	2.86	5.33	1.33	3.98	8.65	15.06	4.52	2.51
Merged-chr15-90403805-3	chr15	90403677	90403877	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50067.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.44	11.32	13.12	8.45	12.27	15.37	8.3	22.21	13.77	14.06	11.56	12.53
Merged-chr2-58111261-2	chr2	58111153	58111353	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	48869.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.4	7.36	3.76	9.63	9.84	12.59	11.05	13.06	6.27
Merged-chr14-48590132-2	chr14	48590005	48590205	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72629.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	2.02	3.77	7.42	12.07	30.68	24.15	15.28	32.16	0.39	1.51	1.51	0.63
Merged-chr1-189689245-1	chr1	189689145	189689345	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.85	1.51	3.99	9.65	10.64	5.33	9.63	14.36	3.93	10.54	3.01	3.13
Merged-chr8-11174055-1	chr8	11173955	11174155	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138750.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.44	4.78	13.69	4.02	9.82	9.72	6.98	12.22	8.85	6.03	8.54	4.7
Merged-chr1-66987988-1	chr1	66987888	66988088	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42932.0	NM_021285	17901.0	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.81	0.0	0.0	0.4	3.27	7.21	4.65	7.6	0.79	2.01	6.53	2.19
Merged-chr1-24679653-2	chr1	24679555	24679755	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	737.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	8.48	7.55	7.99	9.65	8.18	7.53	6.64	7.37	10.42	9.04	7.54	10.34
Merged-chr16-77644048-2	chr16	77643944	77644144	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2229.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	4.85	12.07	10.84	6.84	6.14	2.2	1.66	5.38	2.36	1.0	5.53	4.07
Merged-chr5-22923648-1	chr5	22923548	22923748	+	793.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-176764.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.23	5.28	7.99	5.63	0.41	0.0	0.66	1.07	8.46	21.59	15.07	3.13
Merged-chr6-38360211-3	chr6	38360125	38360325	+	793.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5622.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	6.46	10.82	5.7	10.05	8.59	6.59	7.31	10.23	17.31	13.56	18.59	5.95
Merged-chr14-21747923-2	chr14	21747815	21748015	+	793.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007268, intron 1 of 7)	intron (NM_001007268, intron 1 of 7)	707.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	4.44	6.04	10.27	6.84	15.55	9.09	12.95	20.75	8.06	15.06	9.55	8.46
Merged-chr11-115367748-2	chr11	115367651	115367851	+	793.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346774)	promoter-TSS (NM_001346774)	5.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	12.52	9.81	11.98	10.46	5.73	8.78	2.66	3.64	22.42	18.58	14.57	10.65
Merged-chr1-78724650-3	chr1	78724567	78724767	+	793.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66227.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	12.11	10.56	6.85	14.08	15.55	10.98	10.63	9.95	11.21	19.08	18.09	10.02
Merged-chr4-109438128-3	chr4	109438015	109438215	+	793.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 12 of 17)	intron (NM_001145948, intron 12 of 17)	22468.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	9.29	2.52	6.85	4.02	10.23	6.59	4.98	8.21	9.83	24.1	20.1	10.02
Merged-chr14-54227051-3	chr14	54226969	54227169	+	793.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26860.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	10.9	3.77	5.13	15.69	10.64	12.86	5.65	14.38	22.03	10.04	19.09	10.02
Merged-chr6-54705464-3	chr6	54705380	54705580	+	793.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23856.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	9.69	3.02	12.55	8.45	9.82	8.78	10.3	8.94	14.75	11.55	15.07	5.33
Merged-chr5-148595549-3	chr5	148595451	148595651	+	793.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42763.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.27	8.05	7.99	6.44	7.77	4.08	3.32	10.74	21.44	14.06	15.58	14.72
Merged-chr5-122899227-3	chr5	122899111	122899311	+	793.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	1139.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	15.75	6.54	7.42	8.04	5.32	10.98	3.99	5.16	6.88	7.53	16.58	11.28
Merged-chr19-11098567-3	chr19	11098459	11098659	+	793.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 6 of 6)	intron (NM_027058, intron 6 of 6)	-17456.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	4.44	9.81	15.97	6.44	11.05	3.76	8.3	12.87	10.03	4.02	11.05	6.89
Merged-chr8-120570506-3	chr8	120570433	120570633	+	793.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	18542.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	14.94	7.8	11.98	13.67	7.77	9.09	7.64	13.23	17.31	14.56	21.61	9.08
Merged-chr5-99289314-3	chr5	99289232	99289432	+	793.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-36405.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.67	12.32	11.41	10.86	18.82	15.37	19.93	7.88	6.49	7.53	14.07	10.34
Merged-chr1-151269934-3	chr1	151269848	151270048	+	793.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74538.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.67	11.32	11.98	12.87	26.59	14.42	18.27	20.24	17.9	29.12	12.06	9.08
Merged-chr7-30445547-3	chr7	30445484	30445684	+	793.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007467)	promoter-TSS (NM_007467)	-2.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	9.29	7.55	6.28	16.09	14.73	16.62	8.3	13.09	12.98	5.52	7.03	8.77
Merged-chr10-23177430-5	chr10	23177324	23177524	+	793.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	172466.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.25	2.28	2.41	4.09	7.21	4.32	5.24	3.15	8.54	7.03	4.39
Merged-chr14-16538424-2	chr14	16538307	16538507	+	793.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	L1_Mus1|LINE|L1	37069.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	6.46	4.28	18.25	20.11	3.27	3.45	7.31	6.31	3.15	2.51	4.52	0.94
Merged-chr6-42373164-3	chr6	42373066	42373266	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023580, exon 1 of 18)	exon (NM_023580, exon 1 of 18)	102.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	7.67	18.36	8.56	12.07	8.18	9.41	12.29	13.93	11.21	14.56	13.06	10.34
Merged-chr2-153092416-1	chr2	153092316	153092516	+	793.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16052.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.65	4.28	5.7	7.64	7.77	6.9	5.31	6.93	4.33	2.51	6.53	3.76
Merged-chr19-10693178-3	chr19	10693072	10693272	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	4437.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	9.29	16.6	9.13	7.24	14.73	18.81	3.32	9.67	13.57	25.61	15.07	4.7
Merged-chr8-115711347-3	chr8	115711237	115711437	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4443.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.25	5.53	11.41	10.46	8.59	7.21	13.29	18.39	16.33	8.03	23.11	11.28
Merged-chrX-60402155-1	chrX	60402055	60402255	+	793.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	1850.0	NM_001359002	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.81	2.52	3.42	8.45	0.0	0.94	10.3	10.32	2.16	1.0	2.01	3.13
Merged-chr5-67264270-3	chr5	67264166	67264366	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285452, intron 2 of 6)	intron (NM_001285452, intron 2 of 6)	3701.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	13.73	5.53	14.83	0.4	8.59	16.62	4.32	14.52	6.29	9.54	6.53	12.53
Merged-chr1-131432085-3	chr1	131431961	131432161	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95300.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	11.71	13.58	11.41	10.46	11.86	17.25	7.97	10.88	10.03	6.03	16.08	11.59
Merged-chr19-15518031-3	chr19	15517940	15518140	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	406582.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	6.86	8.55	18.25	16.89	13.09	12.54	8.97	23.07	11.41	8.03	17.59	15.04
Merged-chr1-72123782-2	chr1	72123694	72123894	+	793.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88513.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	5.25	5.53	0.0	6.44	10.64	9.09	12.29	9.08	7.87	12.55	15.58	7.83
Merged-chr11-103310107-3	chr11	103310010	103310210	+	793.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34592.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	10.5	11.82	14.26	16.89	8.59	10.35	7.64	10.04	12.0	5.52	11.05	10.02
Merged-chr1-161170834-3	chr1	161170727	161170927	+	793.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028664)	TTS (NM_028664)	-11513.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	4.04	7.04	0.57	8.45	7.36	14.42	12.29	20.41	11.6	5.02	16.08	4.07
Merged-chr2-26485894-3	chr2	26485781	26485981	+	793.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	-15762.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	10.9	6.79	17.11	10.86	12.27	12.23	15.94	4.82	15.54	14.56	25.12	5.64
Merged-chr11-80171462-2	chr11	80171344	80171544	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-12428.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	11.31	4.78	2.85	2.82	6.14	10.35	1.33	4.96	14.95	14.06	8.04	7.21
Merged-chr7-143769724-1	chr7	143769624	143769824	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2731.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	3.63	1.01	2.85	6.03	9.0	7.53	9.63	13.79	5.7	12.55	6.53	4.07
Merged-chr18-12734678-2	chr18	12734572	12734772	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-6683.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	1.62	2.77	1.71	2.82	3.27	1.25	9.97	14.13	10.23	4.02	9.55	6.58
Merged-chr10-14537311-2	chr10	14537205	14537405	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 1 of 24)	RLTR40|LTR|ERVK	7731.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	1.62	3.02	0.0	3.22	9.82	21.64	1.33	10.4	8.65	6.03	13.57	2.82
Merged-chr2-101699502-2	chr2	101699381	101699581	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009424, exon 8 of 8)	3' UTR (NM_009424, exon 8 of 8)	21061.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	8.88	3.52	1.14	8.85	5.73	12.54	1.66	15.2	8.26	11.05	9.04	4.7
Merged-chr8-103578317-1	chr8	103578217	103578417	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-25482.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.5	3.42	4.83	9.82	5.64	9.3	9.87	5.51	2.51	9.55	8.77
Merged-chr11-104545953-2	chr11	104545847	104546047	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145436, intron 1 of 18)	B3A|SINE|B2	4673.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	10.09	3.77	4.56	2.82	4.91	12.86	3.99	5.58	12.78	6.53	14.07	20.05
Merged-chr1-192763119-2	chr1	192763002	192763202	+	793.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	8117.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	9.29	11.82	11.41	14.88	3.27	3.45	2.99	9.64	13.57	11.05	14.07	14.1
Merged-chr16-65472649-3	chr16	65472545	65472745	+	793.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47984.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	8.48	9.81	14.26	17.7	13.5	13.48	9.3	10.93	17.9	23.1	13.06	9.71
Merged-chr9-9239003-3	chr9	9238897	9239097	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027823)	promoter-TSS (NM_027823)	16.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	6.46	7.55	9.7	6.44	15.55	15.37	17.27	15.25	15.93	14.06	14.07	18.8
Merged-chr5-139388361-3	chr5	139388250	139388450	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1554.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	9.29	5.03	10.84	10.46	16.36	13.17	13.29	20.05	18.88	10.54	14.07	12.84
Merged-chr2-181305123-3	chr2	181305032	181305232	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9368.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	6.06	5.53	13.69	18.1	4.09	7.21	15.28	9.95	8.65	7.53	10.55	5.95
Merged-chr4-128981267-3	chr4	128981173	128981373	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11951.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	5.65	3.77	9.13	4.42	31.91	26.65	16.28	13.68	18.88	10.54	5.02	11.28
Merged-chr8-70943392-3	chr8	70943279	70943479	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	12064.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	8.48	8.8	20.54	11.26	15.96	9.72	4.65	10.46	8.65	5.02	16.08	10.34
Merged-chr15-93294678-3	chr15	93294569	93294769	+	793.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024189, intron 2 of 3)	Lx7|LINE|L1	-19490.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	13.73	12.07	9.13	14.48	9.41	9.72	11.29	16.46	9.05	12.05	20.1	5.95
Merged-chr13-48549795-3	chr13	48549681	48549881	+	793.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11509.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	5.65	4.78	10.84	14.08	7.36	7.21	7.97	8.61	21.44	11.55	19.6	11.59
Merged-chr4-136897317-1	chr4	136897217	136897417	+	793.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007572, intron 2 of 2)	intron (NM_007572, intron 2 of 2)	1527.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	6.46	10.56	8.56	7.24	8.18	3.76	5.65	4.85	16.13	16.07	13.57	8.14
Merged-chr8-70863412-3	chr8	70863291	70863491	+	793.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6383.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	10.5	11.57	7.42	9.25	11.86	10.98	3.32	3.95	15.54	12.05	14.07	4.7
Merged-chr2-120469968-3	chr2	120469863	120470063	+	793.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-596.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	14.94	12.58	10.84	13.67	14.73	13.48	16.94	11.19	8.46	6.03	11.05	6.89
Merged-chr3-55080284-2	chr3	55080184	55080384	+	793.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040593, intron 6 of 7)	intron (NR_040593, intron 6 of 7)	25042.0	NR_040593	70970.0	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	5.25	7.29	5.7	8.85	10.64	12.23	9.97	9.28	13.57	9.04	24.12	8.14
Merged-chr14-14673451-2	chr14	14673364	14673564	+	793.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29561.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	12.52	16.6	11.98	4.42	8.18	4.7	8.97	10.63	12.19	2.51	6.03	3.76
Merged-chr2-32982871-2	chr2	32982751	32982951	+	793.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-768.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	6.06	4.78	1.14	7.64	8.18	9.72	6.31	8.89	9.83	4.02	12.06	7.52
Merged-chr13-37998370-2	chr13	37998263	37998463	+	793.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-4155.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	8.48	11.82	5.7	14.48	4.09	3.76	5.31	10.43	5.51	2.01	7.03	8.46
Merged-chr7-7130898-2	chr7	7130803	7131003	+	793.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029584, exon 4 of 4)	3' UTR (NM_029584, exon 4 of 4)	5852.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	14.94	2.52	10.84	3.62	8.18	7.21	9.63	5.52	6.69	7.03	3.52	4.07
Merged-chr18-49968890-3	chr18	49968782	49968982	+	793.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10545.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	9.29	13.08	13.69	8.04	8.18	6.9	6.98	11.89	15.34	13.56	16.08	8.77
Merged-chrX-163746210-3	chrX	163746114	163746314	+	793.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15118.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	4.85	6.54	11.98	6.44	13.09	20.7	27.9	28.74	17.31	9.54	19.6	9.71
Merged-chr18-64991332-2	chr18	64991226	64991426	+	793.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	RSINE1|SINE|B4	-32201.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.25	3.77	7.99	11.66	7.77	12.54	5.31	9.62	12.19	11.05	20.1	8.14
Merged-chr6-54057188-3	chr6	54057047	54057247	+	793.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	MIR3|SINE|MIR	17215.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	9.29	8.05	3.42	13.67	9.82	5.64	6.31	12.79	11.6	11.05	6.03	4.7
Merged-chr13-113271377-3	chr13	113271261	113271461	+	793.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61702.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	8.48	8.3	12.55	5.23	9.0	8.78	1.99	9.14	13.57	16.07	9.04	8.77
Merged-chr6-38911358-3	chr6	38911265	38911465	+	793.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7621.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	9.69	10.82	13.69	14.88	9.0	16.93	12.95	13.93	13.77	11.55	10.55	8.77
Merged-chr14-51026910-2	chr14	51026806	51027006	+	793.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14961.0	NM_183032	328401.0	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	13.73	10.56	6.28	8.45	10.64	11.6	5.98	10.23	17.51	7.03	8.54	4.7
Merged-chr5-62845006-3	chr5	62844894	62845094	+	793.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	31171.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	12.11	11.07	11.98	17.29	9.82	13.8	7.31	14.72	11.21	13.56	15.07	6.89
Merged-chr2-52577812-3	chr2	52577698	52577898	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-19187.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	10.09	8.55	14.83	10.05	15.14	6.27	12.62	10.99	3.34	10.04	9.55	7.52
Merged-chr7-19218005-2	chr7	19217910	19218110	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175668, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	5472.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	14.54	11.82	14.26	16.09	8.59	15.05	10.96	8.19	4.13	11.55	7.54	8.46
Merged-chr8-79367478-1	chr8	79367378	79367578	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	31990.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.42	2.26	5.7	3.22	4.91	5.96	2.99	6.7	6.88	3.51	4.02	2.19
Merged-chr9-106476756-2	chr9	106476701	106476901	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	148.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	10.9	11.82	9.7	9.25	9.82	15.05	6.64	4.99	18.69	17.07	16.08	14.72
Merged-chr10-37250246-1	chr10	37250146	37250346	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-111320.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.44	2.26	3.99	7.24	7.36	1.25	5.65	9.08	1.97	5.52	6.53	5.33
Merged-chr1-11637245-1	chr1	11637145	11637345	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	223140.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.81	1.01	3.42	2.41	2.05	6.9	4.32	11.83	5.31	5.02	6.53	4.39
Merged-chr7-135689913-3	chr7	135689857	135690057	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081117, exon 14 of 14)	3' UTR (NM_001081117, exon 14 of 14)	26422.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	12.52	5.53	7.99	23.73	9.41	5.02	6.98	7.6	23.01	6.53	21.1	5.01
Merged-chr12-21371085-2	chr12	21370986	21371186	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	2546.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	12.11	12.58	4.56	4.83	10.23	5.02	2.66	1.18	13.18	11.55	1.0	2.82
Merged-chr5-150116804-1	chr5	150116704	150116904	+	793.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98129.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	1.62	0.0	0.0	0.0	0.82	0.31	1.33	1.51	3.54	13.56	17.08	7.83
Merged-chr15-58701685-2	chr15	58701583	58701783	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121744.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	1.51	3.42	18.5	3.27	1.25	14.95	29.1	3.93	3.01	10.05	9.08
Merged-chr13-112397330-1	chr13	112397230	112397430	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-66740.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	20.59	9.06	9.13	19.71	1.64	1.25	1.99	1.68	9.64	7.03	7.54	4.7
Merged-chr4-53264757-2	chr4	53264631	53264831	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	761.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.04	7.04	11.41	6.84	15.96	11.92	19.27	29.36	3.34	10.54	6.53	5.64
Merged-chr3-136790339-1	chr3	136790239	136790439	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	120273.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	7.27	6.29	11.98	8.45	3.68	10.98	4.32	9.28	6.29	7.03	5.02	4.7
Merged-chr14-103020990-2	chr14	103020895	103021095	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	12808.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	5.65	7.55	9.13	5.23	5.32	5.02	10.96	11.5	11.8	7.03	31.15	4.7
Merged-chr4-46389886-2	chr4	46389790	46389990	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-453.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	4.44	7.29	5.13	4.42	3.27	6.9	3.65	7.88	17.51	12.55	9.55	4.39
Merged-chr2-50525052-2	chr2	50524948	50525148	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	170023.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	2.42	2.77	5.7	2.82	4.91	3.45	1.99	6.53	5.11	3.51	17.08	11.28
Merged-chr4-129640338-1	chr4	129640238	129640438	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001199695, exon 2 of 11)	exon (NM_001199695, exon 2 of 11)	467.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	7.67	3.52	1.71	3.22	4.09	7.53	2.33	6.14	2.56	6.03	7.03	5.33
Merged-chr12-16897395-2	chr12	16897304	16897504	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	MTC|LTR|ERVL-MaLR	2426.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	8.48	3.77	9.13	8.04	16.77	15.05	4.98	11.21	4.72	7.03	5.02	4.7
Merged-chr18-4347888-1	chr18	4347788	4347988	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5065.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	1.21	5.03	1.14	2.82	5.73	2.2	6.31	7.23	6.69	4.02	6.03	3.13
Merged-chr15-42965482-1	chr15	42965382	42965582	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	205336.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	10.5	3.02	3.42	5.63	5.73	6.27	3.99	13.68	0.79	0.0	2.01	1.88
Merged-chr10-7057748-1	chr10	7057648	7057848	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34563.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	8.88	4.28	2.28	6.44	15.96	8.47	4.65	7.93	2.56	3.51	7.03	2.19
Merged-chr8-120510173-3	chr8	120510059	120510259	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	21293.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.44	10.31	10.84	2.82	16.36	14.42	16.94	12.9	9.05	12.55	11.56	9.08
Merged-chr10-94039040-1	chr10	94038940	94039140	+	793.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	3039.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	4.04	4.02	10.27	4.83	4.09	5.33	0.66	5.27	10.42	21.09	21.61	9.08
Merged-chr1-36070160-1	chr1	36070060	36070260	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	1760.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	1.62	1.26	2.85	3.62	0.41	8.78	8.3	5.69	2.16	1.0	2.51	7.52
Merged-chr3-62338989-1	chr3	62338889	62339089	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081295, exon 1 of 14)	5' UTR (NM_001081295, exon 1 of 14)	212.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	7.67	10.56	3.42	6.84	6.14	2.51	11.63	6.62	3.34	0.5	4.52	3.45
Merged-chr2-60123659-2	chr2	60123572	60123772	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	2068.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	1.62	2.01	1.14	7.24	3.27	3.45	9.3	12.53	7.28	15.57	16.08	6.89
Merged-chr8-66400181-2	chr8	66400083	66400283	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	Lx8|LINE|L1	13882.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	3.23	3.02	5.7	6.84	9.0	7.21	13.29	11.16	8.06	7.53	15.58	7.52
Merged-chr8-46894538-2	chr8	46894441	46894641	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-92346.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.65	6.54	6.85	7.24	10.23	14.11	6.64	9.22	13.57	11.55	5.02	5.64
Merged-chr16-30788332-1	chr16	30788232	30788432	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	188609.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.65	6.04	1.14	4.02	5.73	9.09	3.65	8.66	6.88	7.03	11.05	3.13
Merged-chr8-10845948-2	chr8	10845860	10846060	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36494.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	3.52	7.99	7.64	3.27	5.64	12.29	12.11	5.11	1.51	2.51	2.19
Merged-chr12-84100901-1	chr12	84100801	84101001	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172580, exon 1 of 3)	5' UTR (NM_172580, exon 1 of 3)	247.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	7.67	12.83	6.85	2.41	9.41	12.54	9.63	8.92	7.67	8.54	6.53	14.1
Merged-chr16-42895922-1	chr16	42895822	42896022	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040402, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-11723.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	5.65	3.52	3.42	1.61	0.82	3.76	8.3	8.44	3.54	8.54	4.52	11.28
Merged-chr2-6460335-1	chr2	6460235	6460435	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	107599.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.44	3.77	3.42	4.02	5.73	2.2	6.31	9.25	4.92	5.52	6.03	6.58
Merged-chr4-116719615-2	chr4	116719512	116719712	+	792.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1343.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	13.73	5.03	2.28	9.25	13.91	12.86	2.99	8.05	18.1	10.04	15.58	7.52
Merged-chr6-82909589-3	chr6	82909424	82909624	+	792.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-27671.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	4.44	4.53	10.84	4.42	9.41	5.02	10.96	9.17	6.29	1.51	3.52	4.39
Merged-chr17-45623656-3	chr17	45623566	45623766	+	792.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21564.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	29.48	16.85	15.97	11.26	25.36	22.58	4.98	11.27	29.5	29.62	31.66	18.17
Merged-chr9-118748537-2	chr9	118748420	118748620	+	792.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36828.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.69	3.52	7.99	4.42	11.45	10.66	19.6	22.15	0.39	2.01	0.5	0.0
Merged-chr1-184260955-2	chr1	184260865	184261065	+	792.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	226584.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	10.9	10.06	14.26	4.83	1.23	5.64	2.33	2.27	13.18	4.02	14.57	13.47
Merged-chr2-77277838-2	chr2	77277746	77277946	+	792.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	2746.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	8.08	3.52	2.28	7.24	9.0	21.64	5.31	11.92	12.59	9.54	12.06	10.02
Merged-chr2-72842082-3	chr2	72842007	72842207	+	792.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28390.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	9.69	10.56	16.54	4.02	5.32	10.03	5.31	6.08	19.28	15.57	13.06	2.51
Merged-chr1-37735038-3	chr1	37734954	37735154	+	792.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15243.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	6.86	4.28	15.97	12.87	12.68	17.25	6.31	13.51	11.41	17.07	18.09	12.53
Merged-chr2-78050081-3	chr2	78049987	78050187	+	792.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	5.25	7.04	8.56	9.25	4.5	9.09	8.3	11.07	12.39	18.08	1.51	10.34
Merged-chr13-81107652-2	chr13	81107547	81107747	+	792.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	143573.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.67	1.51	1.71	0.8	16.36	6.59	10.63	12.17	8.26	6.03	15.58	11.28
Merged-chr17-26009664-2	chr17	26009558	26009758	+	792.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162868, intron 5 of 13)	intron (NM_001162868, intron 5 of 13)	12202.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	3.63	4.28	6.28	7.64	5.32	9.72	9.63	4.88	17.7	13.56	9.04	10.34
Merged-chr4-147922930-2	chr4	147922830	147923030	+	792.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 10 of 18)	intron (NM_011122, intron 10 of 18)	13846.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	5.65	6.54	1.71	4.83	5.32	9.41	5.65	7.99	12.19	16.57	12.56	2.51
Merged-chr5-65984250-3	chr5	65984158	65984358	+	792.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17134.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.85	7.04	12.55	9.65	12.27	9.09	6.31	15.64	20.06	17.57	22.11	8.46
Merged-chr5-12160852-3	chr5	12160844	12161044	+	792.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-222222.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	3.23	6.79	5.7	4.83	3.68	5.64	1.33	4.07	7.67	7.53	9.04	4.07
Merged-chr14-77864272-3	chr14	77864164	77864364	+	792.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	10653.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	13.33	6.04	7.99	8.85	13.91	12.54	9.3	15.73	11.21	8.54	15.58	7.52
Merged-chr8-22928792-3	chr8	22928688	22928888	+	792.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 13 of 17)	intron (NM_001081149, intron 13 of 17)	-46048.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	18.17	7.8	11.41	10.86	11.05	7.84	11.63	16.01	10.03	14.56	24.12	10.96
Merged-chr7-25205530-3	chr7	25205429	25205629	+	792.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207677, intron 4 of 4)	intron (NM_207677, intron 4 of 4)	12196.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	9.29	7.04	3.99	8.45	8.18	6.59	2.66	5.86	13.96	7.53	13.57	5.01
Merged-chr1-53787547-3	chr1	53787445	53787645	+	792.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2330.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	8.88	9.06	17.68	10.46	7.36	6.9	6.98	11.58	16.72	7.03	16.58	8.14
Merged-chr14-55148660-3	chr14	55148569	55148769	+	792.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31734.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	10.9	9.56	7.99	10.46	9.82	9.72	6.98	9.31	18.69	10.04	4.02	12.22
Merged-chr7-136065898-2	chr7	136065797	136065997	+	792.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202427.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	6.46	11.07	12.55	7.24	18.41	16.93	5.65	8.16	0.0	4.52	6.53	0.63
Merged-chr7-118470647-2	chr7	118470553	118470753	+	792.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21322.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.23	0.5	7.99	3.22	9.41	4.08	6.31	10.15	12.39	11.05	19.09	5.64
Merged-chr5-17816367-2	chr5	17816257	17816457	+	792.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	19539.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	12.92	12.83	12.55	16.89	9.82	5.96	11.96	10.23	19.67	10.04	9.55	5.95
Merged-chr11-94070547-2	chr11	94070444	94070644	+	792.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025428, intron 4 of 26)	MLTR14|LTR|ERV1	26339.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.57	0.0	10.23	29.16	7.31	19.09	10.23	20.08	13.57	7.52
Merged-chr11-77411489-3	chr11	77411400	77411600	+	792.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-52413.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	10.5	8.55	12.55	7.24	18.82	11.29	2.33	15.25	18.29	9.04	12.56	11.9
Merged-chr10-51435856-3	chr10	51435741	51435941	+	792.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44771.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.88	3.52	10.27	14.08	18.41	8.78	7.64	19.74	16.13	13.56	19.6	21.3
Merged-chr5-117933028-3	chr5	117932938	117933138	+	792.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-43732.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	11.71	7.04	7.42	3.62	4.91	4.7	8.64	6.93	11.41	15.57	15.07	11.9
Merged-chr1-59953067-2	chr1	59952963	59953163	+	792.674988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037725, intron 3 of 7)	intron (NM_001037725, intron 3 of 7)	40057.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.23	4.53	10.27	6.44	11.45	9.41	26.57	19.43	8.26	13.56	15.07	12.84
Merged-chr12-51828851-1	chr12	51828751	51828951	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144788, intron 1 of 42)	CpG	685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.88	11.57	5.13	13.27	14.32	10.03	13.95	12.5	12.59	19.58	9.55	16.29
Merged-chr10-128589830-3	chr10	128589715	128589915	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-314.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	7.27	10.31	9.13	14.08	7.36	13.17	12.62	5.83	11.6	9.04	14.07	9.08
Merged-chr3-149219926-3	chr3	149219837	149220037	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54800.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	13.33	6.79	11.98	10.05	13.5	7.53	18.6	17.64	11.41	19.58	12.06	5.95
Merged-chr5-105875623-1	chr5	105875523	105875723	+	792.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-945.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.63	2.01	4.56	2.82	8.18	2.2	6.31	9.28	3.93	0.5	10.55	6.27
Merged-chr12-65154483-3	chr12	65154379	65154579	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172578, intron 5 of 13)	L2a|LINE|L2	18101.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	2.42	8.55	10.27	7.24	15.55	28.22	24.58	30.28	8.65	17.57	12.56	2.51
Merged-chr12-32952642-3	chr12	32952544	32952744	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	1145.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	10.09	11.32	10.84	3.62	13.09	16.62	4.32	10.04	12.39	12.05	14.57	10.65
Merged-chr9-72528230-1	chr9	72528130	72528330	+	792.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3628.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	5.65	1.76	7.99	3.22	10.23	6.59	5.98	6.7	0.39	0.0	3.52	0.63
Merged-chr8-126789165-2	chr8	126789063	126789263	+	792.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59857.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.46	4.28	12.55	5.63	17.59	10.03	7.64	9.56	11.8	4.02	9.55	6.27
Merged-chr6-91682716-2	chr6	91682606	91682806	+	792.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1361.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	8.08	3.52	6.28	4.42	8.59	10.03	7.64	10.26	9.64	12.05	14.57	14.1
Merged-chr9-40766960-2	chr9	40766863	40767063	+	792.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-34310.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.08	6.29	11.98	11.66	21.68	3.14	2.66	9.9	2.56	0.0	1.51	0.94
Merged-chr1-151074636-3	chr1	151074529	151074729	+	792.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63405.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	14.94	10.56	16.54	10.05	10.23	8.15	4.98	13.29	11.41	16.07	13.57	8.77
Merged-chr3-61309378-2	chr3	61309286	61309486	+	792.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55121.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.86	4.02	3.42	5.63	11.45	14.74	5.98	10.37	8.46	18.08	11.56	4.7
Merged-chr7-118800296-2	chr7	118800207	118800407	+	792.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55306.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	6.06	3.52	11.41	8.45	13.09	12.86	7.97	9.87	8.06	2.01	9.55	9.08
Merged-chr7-19342816-2	chr7	19342727	19342927	+	792.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2244.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	17.36	5.03	1.71	2.82	11.45	11.92	4.65	4.09	28.13	21.09	19.6	10.34
Merged-chr6-134947589-2	chr6	134947470	134947670	+	792.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	18478.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	4.04	6.04	1.14	0.8	6.55	5.33	3.99	8.58	21.83	16.57	6.53	11.28
Merged-chr12-116462004-2	chr12	116461917	116462117	+	792.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-23703.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.23	6.04	9.7	5.63	4.91	9.41	10.96	10.37	12.0	2.01	12.56	13.78
Merged-chr9-40269295-3	chr9	40269122	40269322	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178227)	promoter-TSS (NM_178227)	6.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.83	7.55	5.7	5.23	5.73	10.98	2.66	4.85	7.67	19.08	18.59	5.33
Merged-chr6-137395251-3	chr6	137395159	137395359	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-15462.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.83	7.04	11.41	2.41	5.73	13.8	6.98	12.11	11.6	8.03	15.58	9.08
Merged-chr1-156735866-3	chr1	156735754	156735954	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16944.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	9.29	11.57	11.98	6.44	15.96	29.48	14.28	8.27	5.11	13.05	13.57	7.21
Merged-chr12-112653348-3	chr12	112653242	112653442	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001165894)	TTS (NM_001165894)	6009.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	12.52	5.53	5.13	8.04	7.36	17.25	5.65	17.47	19.08	15.57	16.58	16.6
Merged-chr18-79036159-1	chr18	79036059	79036259	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	73232.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.23	0.0	1.14	4.83	7.77	1.25	9.63	9.31	5.31	4.02	3.01	6.27
Merged-chr16-21909081-1	chr16	21908981	21909181	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172821, intron 7 of 12)	intron (NM_172821, intron 7 of 12)	17112.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	5.65	4.02	0.0	2.41	6.14	5.96	3.99	13.15	3.74	6.03	6.03	1.88
Merged-chr2-150837718-1	chr2	150837618	150837818	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4852.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.86	2.01	3.42	2.01	8.59	1.57	6.64	6.11	5.51	4.52	1.51	4.07
Merged-chr2-143942824-1	chr2	143942724	143942924	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019771, exon 4 of 4)	3' UTR (NM_019771, exon 4 of 4)	27493.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	2.42	4.28	5.7	7.24	9.41	2.2	5.98	6.08	3.54	1.0	2.01	4.07
Merged-chr10-42268888-2	chr10	42268798	42268998	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7844.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	3.23	3.52	3.42	1.21	5.32	14.74	3.32	7.09	9.05	6.53	9.04	4.39
Merged-chr16-38812692-2	chr16	38812593	38812793	+	792.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029042, intron 3 of 3)	B3A|SINE|B2	-12490.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	6.46	3.52	11.41	8.85	5.32	6.27	5.31	10.82	15.93	10.04	4.52	5.64
Merged-chr2-151000961-2	chr2	151000861	151001061	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207204, intron 1 of 23)	B3|SINE|B2	8437.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	8.08	6.29	6.85	5.23	6.55	7.84	7.31	12.25	12.59	6.03	11.56	10.34
Merged-chr4-49608988-2	chr4	49608887	49609087	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	6.46	2.77	3.42	6.44	6.95	9.41	5.65	11.8	11.8	3.01	12.06	1.88
Merged-chr10-118041256-1	chr10	118041156	118041356	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-100531.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.04	4.78	5.7	5.23	7.77	4.08	3.99	8.86	0.39	0.5	1.51	0.0
Merged-chr17-83846489-2	chr17	83846386	83846586	+	792.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025325, intron 1 of 9)	intron (NM_025325, intron 1 of 9)	304.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	31.5	38.99	48.49	22.52	3.27	7.53	1.99	3.48	10.62	7.53	9.04	5.64
Merged-chr13-5938161-1	chr13	5938061	5938261	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	76672.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.81	2.52	6.28	0.8	2.45	5.96	3.99	7.51	5.9	0.0	0.0	3.76
Merged-chr3-15264576-1	chr3	15264476	15264676	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67726.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.85	6.54	2.28	4.42	6.95	9.72	3.32	7.46	5.7	3.51	4.52	1.25
Merged-chrUn_JH584304-1428-1	chrUn_JH584304	1328	1528	+	792.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58261.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.83	13.56	8.54	19.42
Merged-chr12-51870377-1	chr12	51870277	51870477	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-40841.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.81	3.77	1.71	6.03	10.64	8.15	8.64	13.65	2.56	0.5	0.0	0.63
Merged-chr9-123927417-3	chr9	123927303	123927503	+	792.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41289.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.86	9.31	18.25	11.26	12.68	11.6	6.64	17.78	16.13	10.54	8.54	15.35
Merged-chr9-52098804-3	chr9	52098690	52098890	+	792.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16833.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	9.69	6.29	13.69	10.46	8.59	16.62	5.65	14.38	18.29	12.05	22.11	10.34
Merged-chr2-6718327-3	chr2	6718213	6718413	+	792.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3349.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	14.13	7.29	9.13	9.65	9.82	8.15	9.97	13.91	11.01	12.05	11.56	8.14
Merged-chr15-86216728-3	chr15	86216636	86216836	+	792.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	2277.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	11.31	3.77	23.96	15.28	22.5	7.21	38.53	29.83	8.85	3.01	9.55	12.22
Merged-chr5-64718979-3	chr5	64718887	64719087	+	792.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84536.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.85	6.29	18.25	18.5	7.36	5.33	12.95	24.31	12.59	15.57	13.57	7.52
Merged-chr10-80848720-2	chr10	80848619	80848819	+	792.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	-4680.0	NM_001013758	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	9.29	6.29	14.83	10.05	17.18	26.34	9.3	9.39	9.64	4.52	8.54	5.33
Merged-chr7-19118451-2	chr7	19118348	19118548	+	792.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1411.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	8.48	6.29	1.14	0.4	16.36	4.08	3.99	3.48	24.19	29.12	16.08	16.92
Merged-chr2-102751141-3	chr2	102751010	102751210	+	792.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-4350.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	6.06	6.54	5.7	5.23	11.05	11.92	12.62	6.56	12.78	8.54	6.53	5.33
Merged-chr12-52701376-2	chr12	52701265	52701465	+	792.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	1982.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	6.86	3.52	11.98	12.07	8.18	14.11	9.97	18.79	4.92	8.54	8.04	4.39
Merged-chr18-32408002-2	chr18	32407931	32408131	+	792.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29747.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.85	3.52	5.13	5.23	11.05	3.45	7.31	6.53	10.62	11.05	16.58	7.52
Merged-chr12-5213913-2	chr12	5213824	5214024	+	792.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161758.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	6.46	5.03	6.28	7.64	13.5	6.27	7.64	23.3	10.82	13.05	17.08	9.08
Merged-chr11-34098642-2	chr11	34098537	34098737	+	792.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155520)	promoter-TSS (NR_155520)	-83.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	6.86	6.54	2.28	6.44	12.68	11.29	2.99	7.54	10.62	12.05	11.56	3.76
Merged-chr18-67116118-3	chr18	67116001	67116201	+	792.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177137, intron 1 of 11)	intron (NM_177137, intron 1 of 11)	-17459.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	17.36	13.58	12.55	5.23	9.41	5.02	6.31	8.8	13.18	16.57	18.09	9.4
Merged-chr10-89453259-1	chr10	89453159	89453359	+	792.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9292.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.81	6.04	1.71	4.83	6.95	4.08	8.3	7.96	6.88	5.02	4.52	5.64
Merged-chr9-124012865-3	chr9	124012768	124012968	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-9103.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.85	9.81	4.56	11.26	8.59	23.52	11.63	16.21	13.37	12.55	12.56	7.83
Merged-chr1-106883816-4	chr1	106883667	106883867	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360853)	TTS (NM_001360853)	22592.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	4.04	2.52	2.28	4.83	2.45	7.53	0.0	6.17	3.34	5.52	3.52	4.7
Merged-chr15-94680868-3	chr15	94680778	94680978	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	RMER1A|Other|Other	51693.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	5.65	5.28	12.55	7.24	8.59	8.15	12.95	16.96	23.6	30.13	36.18	22.24
Merged-chr17-33778983-1	chr17	33778883	33779083	+	792.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2592.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.06	2.52	1.71	0.8	11.45	8.15	1.99	9.25	1.18	3.51	3.01	3.76
Merged-chr14-54448114-1	chr14	54448014	54448214	+	792.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-16033.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	7.27	5.28	1.14	5.63	4.91	10.03	3.99	3.31	14.36	9.04	15.07	8.14
Merged-chr2-27721258-3	chr2	27721180	27721380	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	10697.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	12.11	6.79	4.56	14.48	7.36	14.11	10.63	9.48	12.59	13.05	8.54	7.52
Merged-chr19-6857557-3	chr19	6857446	6857646	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081291, intron 2 of 26)	intron (NM_001081291, intron 2 of 26)	665.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	12.52	8.8	11.41	7.24	6.95	7.21	5.98	3.08	16.92	7.03	8.54	9.4
Merged-chr4-134622826-3	chr4	134622724	134622924	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-54973.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	5.65	11.57	18.25	6.44	15.96	10.98	11.63	14.83	11.41	6.53	14.57	5.95
Merged-chr7-118535620-3	chr7	118535516	118535716	+	792.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172476)	TTS (NM_172476)	-2260.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	9.69	9.56	10.84	5.23	10.23	12.54	9.97	12.62	25.18	29.62	13.06	9.08
Merged-chr14-105895250-3	chr14	105895180	105895380	+	792.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011897, intron 1 of 1)	CpG	1539.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	7.67	9.56	0.0	8.45	2.45	3.45	3.99	6.48	3.54	0.5	17.59	4.7
Merged-chr5-3247484-3	chr5	3247377	3247577	+	792.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96416.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	10.5	9.56	17.68	8.85	7.36	5.96	11.63	17.1	14.75	12.55	12.06	4.39
Merged-chr2-60418276-3	chr2	60418176	60418376	+	792.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008867, exon 30 of 30)	3' UTR (NM_008867, exon 30 of 30)	6751.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	4.44	6.29	9.13	11.26	4.5	4.7	5.65	12.31	11.21	12.05	18.09	8.46
Merged-chr6-83654789-2	chr6	83654683	83654883	+	792.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 2 of 6)	intron (NM_016751, intron 2 of 6)	1333.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.81	1.01	15.97	14.08	8.18	3.45	16.61	20.16	2.56	1.0	8.54	9.4
Merged-chr10-84554654-2	chr10	84554563	84554763	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1325.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	4.44	4.78	21.68	9.25	12.68	12.86	13.95	15.81	8.06	4.52	10.55	6.58
Merged-chr4-55567436-2	chr4	55567324	55567524	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34949.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.04	7.29	18.25	4.02	9.41	10.03	5.98	9.67	9.64	6.03	12.06	3.13
Merged-chr12-73968348-1	chr12	73968248	73968448	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178392, exon 3 of 10)	exon (NM_178392, exon 3 of 10)	3818.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	4.04	3.27	3.42	4.83	5.32	8.78	7.97	9.84	6.69	9.04	8.04	4.39
Merged-chr9-77858636-2	chr9	77858534	77858734	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-58731.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	2.42	3.52	6.28	4.83	9.41	13.48	8.3	19.15	10.62	1.51	9.55	13.16
Merged-chr3-9251465-3	chr3	9251434	9251634	+	792.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177660, exon 1 of 6)	exon (NM_177660, exon 1 of 6)	967.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	4.85	6.54	5.7	8.85	9.0	4.08	15.61	12.59	7.47	7.53	7.54	3.45
Merged-chrX-99603898-1	chrX	99603798	99603998	+	792.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133163.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	3.23	3.02	0.57	6.44	8.18	7.53	14.28	16.43	0.98	6.03	8.54	2.82
Merged-chr11-54464788-1	chr11	54464688	54464888	+	792.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	26609.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	7.67	5.28	4.56	5.63	11.45	7.84	6.64	11.64	11.6	3.01	7.03	4.39
Merged-chr2-163100679-3	chr2	163100577	163100777	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11076.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	11.31	6.54	9.7	17.7	7.77	9.72	8.64	8.69	6.1	14.06	19.09	6.27
Merged-chr12-100006850-3	chr12	100006755	100006955	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	ORR1D2|LTR|ERVL-MaLR	42356.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.27	10.31	7.99	6.03	9.82	10.98	5.65	12.14	12.59	12.05	10.05	4.7
Merged-chr19-10795198-3	chr19	10795098	10795298	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 6 of 12)	intron (NM_009852, intron 6 of 12)	34860.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	30.28	11.82	18.83	11.66	15.96	13.48	12.62	8.92	8.46	6.03	15.07	2.19
Merged-chr11-77335245-1	chr11	77335145	77335345	+	792.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 2 of 14)	MTD|LTR|ERVL-MaLR	-13035.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	7.27	6.54	8.56	4.02	12.27	9.72	7.31	10.35	2.16	1.51	17.59	6.27
Merged-chr6-135193135-1	chr6	135193035	135193235	+	792.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040296, exon 5 of 5)	non-coding (NR_040296, exon 5 of 5)	4655.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.23	3.52	0.0	1.61	7.77	10.03	2.33	7.43	1.57	0.0	0.5	0.0
Merged-chr1-82787582-2	chr1	82787493	82787693	+	792.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19137.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	6.46	6.54	3.42	8.85	13.5	11.6	9.3	12.7	11.41	9.04	11.56	8.14
Merged-chr3-133758681-3	chr3	133758527	133758727	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214237.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.25	5.28	15.4	7.64	1.23	8.47	5.98	10.79	3.34	9.54	6.03	10.34
Merged-chr8-128060088-1	chr8	128059988	128060188	+	792.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	218137.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	1.51	0.0	1.21	1.64	3.76	1.0	3.14	20.46	9.04	13.57	9.08
Merged-chr1-74964676-3	chr1	74964574	74964774	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13002.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	5.65	7.04	9.13	1.21	6.55	12.54	1.66	11.89	14.16	8.03	13.06	10.96
Merged-chr12-69462136-3	chr12	69462047	69462247	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13403.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	10.09	10.06	6.28	7.24	14.32	8.78	12.29	11.83	6.1	13.56	16.08	4.7
Merged-chr3-69756703-2	chr3	69756594	69756794	+	792.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34639.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	6.46	5.53	6.28	3.22	4.5	11.92	5.98	7.88	12.39	15.57	19.09	4.7
Merged-chr3-85971086-2	chr3	85970997	85971197	+	792.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	31394.0	NM_001001650	368202.0	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.81	1.51	1.14	4.02	12.27	10.35	10.63	10.85	6.88	11.55	18.59	6.27
Merged-chr5-17878655-2	chr5	17878534	17878734	+	792.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	10325.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.06	3.77	9.13	12.47	7.36	5.64	10.3	8.36	12.0	3.51	6.03	5.64
Merged-chr9-114394921-2	chr9	114394826	114395026	+	792.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4214.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	8.08	1.76	6.28	12.87	9.82	3.76	10.3	12.98	10.82	11.05	10.55	12.22
Merged-chr11-116021481-4	chr11	116021367	116021567	+	792.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008211)	TTS (NM_008211)	3037.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	7.27	5.03	11.98	13.67	8.59	15.37	7.31	6.06	5.9	14.06	13.06	11.59
Merged-chr13-106829789-3	chr13	106829687	106829887	+	792.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	107171.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	6.06	9.56	5.7	10.46	19.23	9.09	4.65	17.83	9.64	3.01	12.06	10.65
Merged-chr1-138976122-3	chr1	138976032	138976232	+	792.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-1525.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	17.36	9.06	13.12	8.45	9.41	8.78	13.62	22.91	19.28	9.04	10.05	6.89
Merged-chr11-86634589-3	chr11	86634467	86634667	+	792.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	36708.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	18.17	16.6	9.7	10.05	13.09	6.59	12.29	12.64	19.08	12.05	10.55	9.08
Merged-chr2-30447414-2	chr2	30447315	30447515	+	792.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_138748, exon 10 of 10)	3' UTR (NM_138748, exon 10 of 10)	26784.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.4	0.75	1.14	0.8	7.77	12.86	4.65	7.15	9.24	7.53	23.62	8.77
Merged-chr15-101975701-2	chr15	101975589	101975789	+	792.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21402.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	4.44	4.53	4.56	4.83	12.27	10.03	5.65	8.33	11.6	9.54	10.55	8.77
Merged-chr1-120074815-5	chr1	120074776	120074976	+	792.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1096.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.25	6.79	13.12	5.63	4.91	4.7	2.99	6.45	11.6	4.02	10.55	10.34
Merged-chr5-24578771-3	chr5	24578619	24578819	+	792.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1252.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	6.86	7.04	3.42	5.63	11.45	5.33	4.65	7.57	18.29	16.07	12.06	16.6
Merged-chr6-17734266-3	chr6	17734171	17734371	+	792.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	RMER1C|Other|Other	-9321.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	8.48	8.55	7.99	12.47	20.86	10.66	20.59	13.04	13.37	16.07	18.59	9.08
Merged-chr11-115081101-3	chr11	115081014	115081214	+	792.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-10317.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	17.36	10.06	19.4	10.05	6.14	10.66	3.32	13.57	19.47	7.53	9.55	8.14
Merged-chr11-98943914-1	chr11	98943814	98944014	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	4203.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.67	6.29	7.42	4.42	7.36	4.39	2.99	3.84	12.39	9.04	6.53	2.51
Merged-chr19-16781678-1	chr19	16781578	16781778	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-745.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	6.06	2.77	5.13	1.61	6.95	4.08	3.99	6.39	3.54	6.53	2.51	4.7
Merged-chr8-36549287-1	chr8	36549187	36549387	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	60096.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	3.63	2.77	1.14	1.61	4.91	8.15	6.64	7.21	1.57	2.01	3.01	5.64
Merged-chr15-34398874-1	chr15	34398774	34398974	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358780, intron 6 of 18)	intron (NM_001358780, intron 6 of 18)	-41002.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	7.27	4.28	6.28	7.64	8.59	4.39	2.99	8.33	0.39	0.0	0.0	0.63
Merged-chr8-120720594-1	chr8	120720494	120720694	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15764.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	9.29	2.52	2.85	2.41	8.18	1.88	2.99	7.26	4.72	2.01	9.55	4.07
Merged-chr8-53449557-1	chr8	53449457	53449657	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62145.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	6.06	5.28	11.98	4.02	9.82	8.15	7.64	14.07	7.28	9.04	6.03	5.64
Merged-chr5-140736313-2	chr5	140736177	140736377	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12150.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	8.48	7.04	2.28	6.44	8.18	8.47	2.99	12.48	11.41	7.03	4.52	5.01
Merged-chrX-109104234-1	chrX	109104134	109104334	+	792.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	B3|SINE|B2	8827.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	8.88	4.78	10.27	2.82	0.82	17.25	3.99	3.67	8.65	9.54	7.54	3.45
Merged-chr10-29445294-3	chr10	29445184	29445384	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82842.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	13.33	12.83	17.11	9.65	6.95	5.33	8.3	11.3	12.0	3.51	8.04	6.89
Merged-chr4-40202411-1	chr4	40202311	40202511	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	37414.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	6.46	5.28	7.42	7.24	8.59	3.76	5.98	8.47	7.47	6.53	13.06	7.83
Merged-chr14-20836095-1	chr14	20835995	20836195	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008873)	promoter-TSS (NM_008873)	-567.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.83	5.03	1.71	1.61	4.91	3.45	5.98	7.54	4.52	7.53	2.51	2.19
Merged-chr17-56338002-1	chr17	56337902	56338102	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11952.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	9.29	3.77	2.85	2.41	4.91	5.96	1.66	6.64	4.33	4.02	4.02	3.76
Merged-chr13-43112866-1	chr13	43112766	43112966	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-9973.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	1.62	2.01	7.99	4.02	2.05	4.39	5.98	5.36	3.74	3.01	1.0	2.19
Merged-chr18-9743412-1	chr18	9743312	9743512	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	35764.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.27	4.53	2.28	2.82	2.45	3.14	6.98	6.56	0.2	0.0	1.0	0.94
Merged-chr13-98947397-1	chr13	98947297	98947497	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21013.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.86	3.77	10.27	1.61	6.14	6.9	3.32	9.53	0.79	0.0	0.5	1.88
Merged-chr3-152569357-2	chr3	152569252	152569452	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-97561.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	6.46	3.77	6.28	8.85	11.05	4.7	7.64	15.76	10.42	7.03	15.07	5.64
Merged-chr5-63837264-1	chr5	63837164	63837364	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	24769.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	7.27	3.77	2.85	0.0	7.77	10.35	6.98	17.27	4.33	8.54	9.55	2.82
Merged-chr15-86135516-3	chr15	86135447	86135647	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-50181.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	14.54	6.79	1.14	9.65	10.23	15.05	3.99	7.01	4.33	15.06	9.55	6.89
Merged-chr14-66185056-2	chr14	66184946	66185146	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	28778.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.06	6.04	7.42	0.0	2.86	5.96	4.65	11.44	11.21	3.51	5.02	10.02
Merged-chr13-92354072-2	chr13	92353976	92354176	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	-707.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	8.08	4.28	10.27	6.44	10.23	4.08	9.63	7.43	11.01	17.07	3.52	12.53
Merged-chr2-129603701-1	chr2	129603601	129603801	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8239.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	10.09	11.07	6.85	2.41	0.82	1.25	2.66	5.92	10.62	5.52	8.04	3.76
Merged-chr14-77903885-1	chr14	77903785	77903985	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178825)	promoter-TSS (NM_178825)	-354.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.85	6.04	2.85	2.01	4.5	1.88	6.31	7.18	10.23	12.05	5.53	5.33
Merged-chr11-35693299-1	chr11	35693199	35693399	+	792.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 32 of 35)	intron (NM_011412, intron 32 of 35)	-76196.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	6.46	6.79	0.0	2.41	2.45	0.94	3.32	2.41	10.23	13.56	1.51	3.45
Merged-chr12-28743734-1	chr12	28743634	28743834	+	792.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 2 of 11)	L1MA9|LINE|L1	6660.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.08	0.39	0.0	3.01	3.45
Merged-chr17-43073000-1	chr17	43072900	43073100	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	56445.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.65	2.01	6.85	0.8	2.45	9.72	3.32	4.99	0.0	2.01	0.0	1.88
Merged-chr19-3325139-3	chr19	3325019	3325219	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	1818.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	11.71	9.06	11.41	0.0	13.5	11.29	6.64	11.83	10.03	9.54	6.03	10.02
Merged-chr6-88940721-1	chr6	88940621	88940821	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	38470.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	6.86	4.28	14.26	11.66	0.0	0.0	0.0	0.25	0.0	0.0	0.0	0.94
Merged-chrX-38456006-3	chrX	38455897	38456097	+	791.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 1 of 9)	intron (NR_152733, intron 1 of 9)	463.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	5.65	8.8	6.85	8.45	7.36	20.07	8.3	11.61	22.82	13.05	19.09	10.65
Merged-chr13-13526117-3	chr13	13526017	13526217	+	791.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64292.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	4.44	10.06	13.12	3.62	4.5	4.7	4.32	5.55	21.24	9.04	22.61	7.52
Merged-chr17-13817943-3	chr17	13817844	13818044	+	791.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 5 of 33)	intron (NR_151731, intron 5 of 33)	-56550.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	8.08	6.29	13.69	9.65	5.32	6.59	11.63	11.21	18.1	8.03	19.6	8.77
Merged-chr6-32183919-3	chr6	32183802	32184002	+	791.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	133614.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	10.9	2.52	13.12	12.07	13.5	6.9	10.96	20.1	12.19	2.01	7.54	8.77
Merged-chr8-108759885-3	chr8	108759792	108759992	+	791.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	45248.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.65	13.33	6.28	6.44	12.68	6.9	10.63	8.16	13.18	19.58	10.55	2.82
Merged-chr4-83234671-3	chr4	83234568	83234768	+	791.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	89521.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.86	9.31	9.13	8.45	10.64	5.96	8.64	13.96	10.62	4.52	4.02	6.89
Merged-chr11-69629005-3	chr11	69628897	69629097	+	791.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3974.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	7.67	7.55	12.55	8.85	9.82	9.41	5.98	10.63	17.11	18.58	13.57	5.64
Merged-chr1-119648594-3	chr1	119648484	119648684	+	791.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145506, intron 1 of 24)	CpG	416.0	NM_001113416	226352.0	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	4.85	4.02	1.14	17.29	11.05	9.09	15.28	8.94	9.64	3.01	14.57	7.83
Merged-chr18-38186054-3	chr18	38185965	38186165	+	791.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23697.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	6.46	8.8	22.25	8.85	3.27	9.09	7.64	6.42	13.77	23.1	27.13	12.84
Merged-chr17-21474867-3	chr17	21474776	21474976	+	791.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-14112.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	9.29	10.82	7.99	12.87	9.41	12.54	9.97	3.03	17.11	7.03	9.55	11.9
Merged-chr7-83600137-2	chr7	83600034	83600234	+	791.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 8 of 22)	intron (NM_177695, intron 8 of 22)	15203.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	11.71	3.27	2.28	3.62	6.55	8.15	2.66	8.13	12.19	12.55	19.6	8.77
Merged-chr2-156725511-2	chr2	156725441	156725641	+	791.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	4262.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	11.71	7.55	11.41	4.42	7.77	12.54	4.65	8.36	6.29	12.55	9.04	1.88
Merged-chr9-47627047-3	chr9	47626954	47627154	+	791.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96702.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	15.75	5.28	18.83	12.47	14.73	10.03	9.3	10.49	11.21	3.01	7.03	4.7
Merged-chr7-64277138-2	chr7	64277036	64277236	+	791.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-10534.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	4.04	7.04	17.11	8.85	5.73	2.82	15.28	27.22	3.74	5.02	3.01	0.94
Merged-chr5-67892384-2	chr5	67892274	67892474	+	791.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44943.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.85	2.52	11.41	5.23	9.82	5.96	9.63	17.07	15.54	10.54	12.56	2.82
Merged-chr15-83415534-2	chr15	83415435	83415635	+	791.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	17315.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	13.73	6.04	10.84	13.27	12.68	16.31	7.31	13.77	2.95	3.01	5.53	2.82
Merged-chr6-127108426-1	chr6	127108326	127108526	+	791.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1126.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	5.25	5.79	10.27	0.8	9.0	8.78	5.31	11.38	11.21	1.0	2.01	3.13
Merged-chr2-116817840-3	chr2	116817740	116817940	+	791.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60851.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	10.09	14.09	21.11	10.46	5.32	10.35	14.95	14.05	10.42	7.03	15.07	7.21
Merged-chr18-62095735-3	chr18	62095607	62095807	+	791.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER103C|DNA|hAT-Charlie	84274.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.04	8.55	25.1	9.65	22.5	13.17	6.64	11.83	10.42	9.54	13.06	8.46
Merged-chr3-87214684-2	chr3	87214584	87214784	+	791.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39937.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	2.02	1.76	9.13	5.23	4.5	6.9	5.31	7.74	15.34	11.05	21.1	12.84
Merged-chr16-28929134-3	chr16	28929102	28929302	+	791.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	CpG	496.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	6.06	11.07	11.41	5.63	7.77	3.45	6.64	6.42	6.29	2.51	7.03	7.21
Merged-chr1-91087134-2	chr1	91087030	91087230	+	791.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310732, intron 9 of 24)	intron (NM_001310732, intron 9 of 24)	33686.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.63	1.01	4.56	3.62	4.5	6.27	11.96	9.84	4.92	5.52	14.57	8.46
Merged-chr7-101971273-4	chr7	101971217	101971417	+	791.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133947, intron 1 of 24)	intron (NM_133947, intron 1 of 24)	1474.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	5.25	4.53	5.13	4.83	11.45	6.27	5.65	10.46	18.49	6.03	12.56	10.65
Merged-chr13-18794631-3	chr13	18794528	18794728	+	791.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77336.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	10.5	12.07	10.84	12.87	11.86	11.92	11.96	10.21	12.59	11.55	12.56	5.64
Merged-chr1-161166399-1	chr1	161166299	161166499	+	791.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028664, intron 6 of 6)	intron (NM_028664, intron 6 of 6)	-7085.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	0.4	0.5	0.57	0.8	9.41	11.29	7.64	10.54	1.97	2.01	2.51	0.94
Merged-chr3-79088657-3	chr3	79088551	79088751	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310536, exon 12 of 24)	exon (NM_001310536, exon 12 of 24)	56236.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.42	16.1	14.83	5.23	7.77	10.03	8.3	9.64	8.85	0.0	11.05	4.07
Merged-chr4-35096221-3	chr4	35096138	35096338	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55817.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	17.36	8.05	10.84	20.11	12.68	16.62	12.29	22.15	9.83	15.57	9.55	10.96
Merged-chr3-100422607-1	chr3	100422507	100422707	+	791.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3798.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	8.08	2.52	1.14	4.42	6.55	5.33	5.98	6.31	4.52	10.04	8.54	3.13
Merged-chrX-75128707-3	chrX	75128618	75128818	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008621, intron 1 of 11)	intron (NM_008621, intron 1 of 11)	2298.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	5.65	12.83	2.85	10.05	9.0	13.8	5.65	11.13	13.18	15.06	7.03	8.14
Merged-chr3-37421359-1	chr3	37421259	37421459	+	791.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021343, intron 1 of 15)	intron (NM_021343, intron 1 of 15)	1409.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	4.44	4.28	6.28	10.46	8.18	4.7	5.31	8.5	5.11	2.51	5.53	13.16
Merged-chr13-110363925-3	chr13	110363825	110364025	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6753.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	11.31	5.53	10.27	6.44	18.0	17.87	17.27	33.93	12.98	4.52	15.58	7.21
Merged-chr9-120502207-3	chr9	120502128	120502328	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9622.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	9.29	8.3	13.12	4.83	3.27	15.99	3.32	5.1	15.93	11.05	18.59	5.64
Merged-chr1-95449930-2	chr1	95449833	95450033	+	791.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136305.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	1.21	5.03	7.99	8.04	11.05	4.39	5.31	14.72	9.83	16.07	12.06	4.7
Merged-chr3-127803015-2	chr3	127802916	127803116	+	791.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12359.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	12.92	7.55	11.98	11.26	11.05	10.66	13.62	11.1	4.72	4.52	3.52	3.45
Merged-chr3-144692208-3	chr3	144692105	144692305	+	791.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	28130.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	10.9	6.79	7.99	8.45	12.27	9.72	6.98	13.26	15.93	14.56	16.58	11.28
Merged-chr8-9008334-3	chr8	9008245	9008445	+	791.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123943.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	17.36	18.86	15.4	13.27	9.41	23.52	10.3	8.13	11.01	8.03	11.56	5.01
Merged-chr17-26069485-3	chr17	26069389	26069589	+	791.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162868)	promoter-TSS (NM_001162868)	-312.0	NM_001162869	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	16.15	14.34	13.12	11.66	7.77	17.25	18.27	13.93	9.44	10.54	10.55	5.33
Merged-chr14-52141432-3	chr14	52141318	52141518	+	791.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30515.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	7.27	7.8	7.42	2.41	9.41	9.41	4.65	8.07	13.77	17.57	16.58	6.58
Merged-chrX-106035889-2	chrX	106035820	106036020	+	791.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	8696.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	7.27	9.31	3.42	4.42	6.95	12.54	4.65	7.91	15.93	21.09	14.07	10.65
Merged-chr5-17975428-3	chr5	17975322	17975522	+	791.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	12852.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	12.11	8.3	3.42	15.28	6.55	22.58	13.29	18.48	9.44	16.07	12.06	10.65
Merged-chr7-89216401-3	chr7	89216302	89216502	+	791.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	L1_Rod|LINE|L1	122385.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.08	5.03	10.27	16.09	9.82	17.25	14.28	15.87	9.64	12.55	15.58	8.14
Merged-chr11-104367099-3	chr11	104366979	104367179	+	791.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 5 of 14)	B4A|SINE|B4	75212.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	10.09	7.29	15.97	10.86	13.91	15.05	17.94	19.65	11.6	9.54	14.07	10.34
Merged-chr16-77602764-3	chr16	77602659	77602859	+	791.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3102.0	NR_029728	387246.0		NR_029728	ENSMUSG00000065557	Mirlet7c-1	Mirnlet7c|Mirnlet7c-1|let-7c-1	microRNA let7c-1	ncRNA	12.52	24.15	6.28	12.87	4.5	18.81	5.98	9.64	18.69	16.57	10.55	10.34
Merged-chr4-62480698-1	chr4	62480598	62480798	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	631.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	2.02	5.28	7.99	4.02	9.0	5.64	4.98	6.36	6.88	1.0	6.03	2.82
Merged-chr14-103013345-2	chr14	103013242	103013442	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	20461.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	4.85	10.31	1.71	2.82	11.45	24.15	5.65	5.89	21.05	14.06	15.58	5.01
Merged-chr1-106809935-2	chr1	106809850	106810050	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-13225.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	6.46	9.81	2.28	6.84	1.64	4.7	4.32	11.02	0.2	0.0	0.0	0.0
Merged-chr5-139197832-2	chr5	139197713	139197913	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2824.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	5.65	7.55	11.98	2.41	6.14	6.9	2.33	3.79	15.93	10.04	17.08	2.82
Merged-chr3-100596523-2	chr3	100596430	100596630	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010763, intron 8 of 12)	intron (NM_010763, intron 8 of 12)	88943.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	8.08	4.28	6.85	16.89	4.09	4.39	10.3	7.6	2.75	7.53	3.52	6.89
Merged-chr9-3002377-2	chr9	3002294	3002494	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	36349.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.46	14.59	7.42	8.85	9.82	10.03	14.62	11.47	12.19	12.55	14.07	14.41
Merged-chr4-149415985-1	chr4	149415885	149416085	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	10646.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	3.63	6.04	7.99	8.04	7.77	3.45	9.3	12.62	1.57	6.03	4.52	3.13
Merged-chr2-103972001-2	chr2	103971909	103972109	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	1722.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	8.88	5.79	14.26	12.07	10.23	5.02	12.95	15.25	4.92	8.54	9.04	9.08
Merged-chr15-102225521-3	chr15	102225380	102225580	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	6455.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	7.67	4.28	14.83	8.04	6.95	4.7	3.99	5.64	12.98	11.55	9.55	9.08
Merged-chr9-37047316-2	chr9	37047253	37047453	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	99969.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.04	5.03	21.11	5.23	0.41	2.51	3.65	8.52	0.39	0.0	1.0	0.0
Merged-chr11-107102955-2	chr11	107102804	107103004	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359590, intron 2 of 27)	intron (NM_001359590, intron 2 of 27)	29018.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	2.83	1.01	2.28	0.8	1.23	5.02	1.99	4.15	1.18	2.01	9.04	2.51
Merged-chr8-79450343-2	chr8	79450224	79450424	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50856.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.83	5.79	1.14	6.44	4.5	2.82	9.97	10.15	6.69	4.52	12.56	5.33
Merged-chr2-79372649-2	chr2	79372556	79372756	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048176, intron 2 of 12)	L2|LINE|L2	56332.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	10.09	1.76	5.7	3.62	8.18	2.2	5.65	5.66	9.64	2.01	17.59	4.07
Merged-chr18-74214000-1	chr18	74213900	74214100	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-2212.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	4.85	4.02	4.56	2.01	2.05	5.02	4.65	9.36	6.69	7.53	6.53	4.39
Merged-chr9-85592793-1	chr9	85592693	85592893	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	156541.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	5.25	1.76	1.14	2.41	10.23	6.27	1.99	8.69	2.75	4.52	4.02	2.19
Merged-chr15-77839742-2	chr15	77839668	77839868	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	2407.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.44	3.52	5.7	3.62	2.05	3.76	5.31	5.64	16.92	12.55	10.05	9.4
Merged-chr11-58948772-2	chr11	58948669	58948869	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030082)	promoter-TSS (NM_030082)	-142.0	NM_030082	78303.0	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	1.21	2.26	6.28	2.01	0.0	5.96	3.65	3.87	24.39	22.09	24.62	12.53
Merged-chr3-108286390-2	chr3	108286292	108286492	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	2328.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	4.85	7.04	14.26	4.83	21.27	7.84	3.99	9.31	2.36	2.01	5.02	6.89
Merged-chr15-8643275-2	chr15	8643155	8643355	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 6 of 9)	(A)n|Simple_repeat|Simple_repeat	67552.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	6.46	5.53	9.13	0.8	4.09	6.9	1.66	2.36	19.28	2.01	4.02	11.9
Merged-chr13-105380143-2	chr13	105379976	105380176	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-63617.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	5.65	5.03	6.85	8.85	5.32	10.35	4.32	3.17	3.93	8.54	10.55	3.45
Merged-chr2-129066530-1	chr2	129066430	129066630	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027192, intron 1 of 6)	intron (NM_027192, intron 1 of 6)	583.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	6.06	4.02	1.71	5.23	2.86	15.05	4.65	7.29	7.28	4.02	12.06	0.94
Merged-chr5-21611217-1	chr5	21611117	21611317	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199632, intron 7 of 20)	L1M2|LINE|L1	34388.0	NM_001199632	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	3.23	4.28	8.56	10.46	6.95	1.25	9.97	16.99	6.49	4.02	17.08	3.76
Merged-chr19-45545149-3	chr19	45545051	45545251	+	791.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15413.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	18.98	13.83	14.83	11.66	10.23	8.78	10.3	10.49	14.16	16.07	23.11	6.58
Merged-chr9-110478791-3	chr9	110478700	110478900	+	791.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1806.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	8.08	9.56	11.41	11.26	14.32	5.33	2.33	16.26	15.14	11.55	16.08	14.1
Merged-chr19-26506962-3	chr19	26506876	26507076	+	791.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-98184.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.46	6.29	5.13	11.26	9.82	5.33	6.98	11.24	21.64	10.54	19.09	11.59
Merged-chr7-132929931-2	chr7	132929831	132930031	+	791.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1211.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	6.86	3.02	3.42	3.22	17.18	4.08	9.63	9.0	19.47	15.57	16.08	10.96
Merged-chr1-39925091-2	chr1	39925005	39925205	+	791.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	24192.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	6.46	7.04	15.4	10.46	8.59	3.45	7.31	10.54	3.74	6.03	5.02	8.77
Merged-chr1-170218695-2	chr1	170218582	170218782	+	791.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3275.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	8.08	3.02	3.42	2.01	11.86	17.56	11.29	10.99	21.05	13.05	21.61	9.4
Merged-chr17-5784925-3	chr17	5784825	5785025	+	791.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13732.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	11.31	7.04	18.25	9.65	17.59	3.76	2.99	12.93	12.39	7.53	12.06	10.02
Merged-chr5-105531183-2	chr5	105531083	105531283	+	791.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	11712.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.25	10.31	5.7	6.44	11.05	15.05	14.62	3.95	3.74	2.01	5.53	2.82
Merged-chr5-136623335-2	chr5	136623249	136623449	+	791.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-55859.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.65	9.06	7.99	3.62	3.27	10.35	5.65	6.79	6.69	20.59	9.04	14.72
Merged-chr7-38141930-3	chr7	38141818	38142018	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34428.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	8.48	7.04	14.26	3.22	13.5	17.25	6.31	8.72	12.78	15.57	17.08	13.47
Merged-chrX-48405248-1	chrX	48405148	48405348	+	791.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178782, intron 14 of 14)	intron (NM_178782, intron 14 of 14)	57884.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	3.23	3.02	11.98	4.83	3.68	9.09	6.98	9.79	4.13	6.03	4.02	8.14
Merged-chr8-40151084-1	chr8	40150984	40151184	+	791.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135869.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	5.25	4.02	5.7	0.8	8.18	9.72	1.33	9.5	2.75	2.51	4.52	0.94
Merged-chr10-37139342-3	chr10	37139226	37139426	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-400.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.83	12.32	3.99	14.48	4.91	8.78	7.97	6.14	15.14	20.08	14.07	5.01
Merged-chr12-99956610-3	chr12	99956525	99956725	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7874.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	15.75	6.54	10.27	13.67	17.59	13.8	10.96	18.03	10.23	3.01	12.06	9.4
Merged-chr3-9832886-1	chr3	9832786	9832986	+	791.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	793.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.44	5.53	3.42	6.84	9.41	5.64	13.62	6.03	6.1	2.01	4.52	4.07
Merged-chr14-120832461-3	chr14	120832366	120832566	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78728.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	8.48	7.8	2.85	7.24	13.09	4.08	10.3	14.13	11.01	14.06	14.57	6.89
Merged-chr10-94359336-1	chr10	94359236	94359436	+	791.285706	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	47387.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.81	2.01	3.42	1.61	3.27	10.98	2.66	2.92	1.97	3.01	4.52	2.51
Merged-chr3-9656767-3	chr3	9656682	9656882	+	791.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46697.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	6.86	7.29	6.85	6.84	8.59	16.93	9.3	10.4	15.54	17.57	11.56	16.29
Merged-chr1-33916769-3	chr1	33916670	33916870	+	791.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	8545.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	12.52	14.59	11.41	7.64	9.82	9.41	6.31	7.71	19.87	13.05	18.59	8.77
Merged-chr9-67001291-3	chr9	67001205	67001405	+	791.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25821.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	12.52	10.82	13.12	5.63	6.95	15.68	2.66	9.08	11.01	12.05	12.06	6.89
Merged-chr16-24637977-2	chr16	24637866	24638066	+	791.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-83889.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.86	3.77	7.42	1.61	11.86	14.42	5.31	7.57	16.92	9.04	12.56	3.76
Merged-chr17-10394907-5	chr17	10394820	10395020	+	791.241638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61296.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	5.65	6.79	5.13	12.87	5.32	6.27	8.97	11.19	13.77	7.53	12.56	6.58
Merged-chr3-79178905-3	chr3	79178774	79178974	+	791.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32999.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.27	11.57	7.42	3.22	10.64	20.07	7.97	10.91	12.19	10.04	14.07	7.21
Merged-chr17-88257340-3	chr17	88257237	88257437	+	791.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131825.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	14.13	11.32	9.13	8.04	7.36	20.7	8.64	12.79	21.83	13.56	12.06	9.08
Merged-chr6-91153710-2	chr6	91153619	91153819	+	791.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3096.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	6.86	3.02	8.56	4.02	10.64	7.21	5.31	7.74	9.83	3.51	13.57	10.02
Merged-chr3-93506097-3	chr3	93505985	93506185	+	791.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14411.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	3.63	7.04	6.85	5.63	8.59	11.29	13.62	15.64	11.21	7.03	10.05	10.34
Merged-chr14-56576588-3	chr14	56576510	56576710	+	791.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145978, intron 1 of 34)	intron (NM_001145978, intron 1 of 34)	991.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	6.06	5.03	17.11	11.26	8.18	10.35	6.31	10.43	10.82	10.04	5.02	9.4
Merged-chr11-44601163-2	chr11	44601087	44601287	+	791.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	14870.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	6.46	10.31	8.56	14.48	12.27	5.33	10.3	13.18	7.08	5.02	6.03	7.52
Merged-chr10-60779880-2	chr10	60779790	60779990	+	791.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029770, intron 3 of 16)	intron (NM_029770, intron 3 of 16)	-27108.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	7.27	5.28	5.7	4.83	10.64	9.72	2.33	6.06	8.26	9.04	3.52	5.33
Merged-chr3-60472171-3	chr3	60472072	60472272	+	791.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-658.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	13.33	5.53	3.42	10.86	17.59	5.96	11.29	12.93	20.26	10.54	21.61	13.78
Merged-chr11-57934475-3	chr11	57934356	57934556	+	791.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74608.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.06	4.78	2.28	12.47	10.23	10.66	5.65	11.5	18.1	13.56	19.6	13.47
Merged-chr3-82375455-2	chr3	82375369	82375569	+	791.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356457, intron 6 of 13)	intron (NM_001356457, intron 6 of 13)	17282.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	4.44	4.02	13.69	7.64	12.27	6.9	12.62	22.32	13.77	13.05	10.05	10.02
Merged-chr7-110268177-2	chr7	110268082	110268282	+	791.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	46479.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	9.69	14.59	9.13	4.83	9.0	20.7	5.98	4.51	13.96	19.08	17.59	8.14
Merged-chr15-53485444-2	chr15	53485354	53485554	+	791.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	128825.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	16.56	18.36	17.11	14.08	3.27	11.29	3.32	7.88	12.98	1.51	8.04	3.76
Merged-chr1-131566363-3	chr1	131566256	131566456	+	791.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR46B|LTR|ERVK	-32758.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	6.06	14.34	10.84	3.22	29.05	42.65	10.3	8.3	21.83	19.58	12.06	12.53
Merged-chr6-124415900-3	chr6	124415772	124415972	+	791.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175933)	promoter-TSS (NM_175933)	-17.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	9.29	12.32	1.14	7.24	7.36	12.86	7.31	8.33	18.29	6.53	12.56	4.39
Merged-chr6-142757731-3	chr6	142757637	142757837	+	791.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	1051.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	9.29	6.04	9.7	7.24	6.95	8.47	9.63	12.95	11.6	5.02	16.58	10.96
Merged-chr3-108186605-3	chr3	108186499	108186699	+	791.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001287093, exon 1 of 3)	5' UTR (NM_001287093, exon 1 of 3)	310.0	NM_146137	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	12.52	13.33	5.13	9.25	6.95	8.47	5.31	13.12	13.96	16.57	14.57	9.08
Merged-chr12-113218070-3	chr12	113217965	113218165	+	791.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32162.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	19.38	11.07	18.25	9.25	9.0	10.35	6.98	9.93	11.21	9.54	17.59	9.71
Merged-chr2-170130624-1	chr2	170130524	170130724	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159683, intron 2 of 6)	CpG	596.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	8.08	6.29	1.71	3.62	5.73	10.35	3.99	4.65	20.26	16.07	12.06	5.64
Merged-chr10-25324153-1	chr10	25324053	25324253	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24990.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.06	7.55	6.85	6.03	5.73	5.64	5.65	9.56	0.79	3.01	5.53	3.45
Merged-chr15-57883924-1	chr15	57883824	57884024	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	8494.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	4.85	1.26	5.7	8.04	2.05	8.15	2.33	7.15	6.1	6.03	12.06	5.95
Merged-chr7-107707916-1	chr7	107707816	107708016	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357438, intron 3 of 20)	intron (NM_001357438, intron 3 of 20)	16073.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.85	7.55	4.56	4.83	7.36	7.84	7.64	11.38	9.83	2.51	5.02	8.14
Merged-chr10-122559518-1	chr10	122559418	122559618	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10373.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.0	2.77	0.0	3.22	1.64	4.39	1.33	1.49	12.78	5.02	12.06	4.39
Merged-chr8-115697800-1	chr8	115697700	115697900	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9094.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.04	4.02	6.28	2.41	7.36	0.63	5.31	10.77	3.15	3.51	2.01	5.33
Merged-chr7-110910641-1	chr7	110910541	110910741	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	5656.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	2.42	2.26	11.98	5.63	3.68	2.2	5.98	9.95	2.56	2.51	2.01	3.76
Merged-chr11-63136393-1	chr11	63136293	63136493	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3590.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	3.23	2.77	1.14	3.62	9.82	13.48	4.98	7.6	3.74	7.53	1.51	2.51
Merged-chr18-56573506-1	chr18	56573406	56573606	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-567.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	6.46	5.03	3.42	7.24	11.45	4.7	3.65	6.17	7.67	5.52	8.54	6.27
Merged-chr19-29418964-2	chr19	29418869	29419069	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	8050.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	9.69	5.03	10.27	10.05	21.68	7.53	4.32	14.44	4.72	5.02	13.06	6.27
Merged-chr2-46662052-1	chr2	46661952	46662152	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	965447.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	10.09	2.52	5.7	3.62	15.55	2.82	1.66	9.11	4.33	14.56	7.54	6.58
Merged-chr19-47890875-4	chr19	47890816	47891016	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25122.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	10.9	8.05	7.42	15.69	11.86	6.9	9.97	10.93	14.16	14.06	17.08	6.27
Merged-chr9-96396695-2	chr9	96396614	96396814	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32283.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.21	3.77	4.56	6.03	4.91	9.41	4.32	3.03	15.74	14.06	5.53	5.95
Merged-chr12-27303353-1	chr12	27303253	27303453	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39365.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	2.42	0.5	0.0	0.8	2.45	3.14	5.98	9.14	0.39	0.0	0.5	0.31
Merged-chr10-44425048-1	chr10	44424948	44425148	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	33700.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.65	4.53	5.7	3.22	4.09	7.21	2.99	6.2	7.08	3.01	13.06	3.45
Merged-chr4-8912211-2	chr4	8912124	8912324	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	160900.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	12.11	8.05	7.99	6.84	12.68	10.35	4.98	6.22	17.11	21.59	19.09	6.58
Merged-chr1-138137928-1	chr1	138137828	138138028	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	ID_B1|SINE|B4	37198.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	13.33	5.03	7.99	7.24	9.0	10.66	4.32	14.44	16.13	4.52	9.55	5.64
Merged-chr1-60804253-1	chr1	60804153	60804353	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57865.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.81	0.0	3.99	6.44	7.77	7.84	5.98	9.17	1.77	0.5	4.02	0.63
Merged-chr5-34948958-2	chr5	34948863	34949063	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-485.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	15.75	17.36	10.84	15.69	15.55	9.72	16.28	5.92	9.83	17.07	25.63	7.21
Merged-chr14-79541819-1	chr14	79541719	79541919	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	26145.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	1.62	6.29	9.13	0.8	6.55	12.86	1.66	4.23	11.6	5.52	13.06	0.94
Merged-chr4-71252464-2	chr4	71252363	71252563	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-717535.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.23	2.01	10.27	2.01	3.68	1.88	9.63	20.92	8.65	4.02	22.11	7.83
Merged-chr7-64051225-1	chr7	64051125	64051325	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102610.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.25	5.53	2.28	3.62	8.59	4.08	5.31	8.41	6.49	5.52	5.02	5.01
Merged-chr10-31742604-1	chr10	31742504	31742704	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013411, intron 5 of 6)	intron (NM_001013411, intron 5 of 6)	-132879.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.81	2.01	2.28	0.8	6.14	5.64	6.31	7.23	3.54	1.51	0.0	1.88
Merged-chr15-84916798-1	chr15	84916698	84916898	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-6630.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	1.62	3.02	5.7	16.49	2.86	6.9	7.64	16.18	5.11	5.02	9.55	8.46
Merged-chr18-67826200-2	chr18	67826113	67826313	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	26106.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	2.42	3.27	4.56	2.82	3.68	5.96	1.0	3.81	20.85	16.57	21.1	14.1
Merged-chr10-122988489-1	chr10	122988389	122988589	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-2765.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	10.09	6.54	2.28	4.02	11.05	3.76	9.63	3.28	3.93	1.51	4.52	6.89
Merged-chrUn_JH584304-57666-1	chrUn_JH584304	57566	57766	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 2 of 6)	intron (NR_003518, intron 2 of 6)	2023.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.37	20.08	10.55	7.83
Merged-chr17-65749996-1	chr17	65749896	65750096	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	22756.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	1.62	1.51	4.56	0.8	2.45	1.25	2.33	2.27	17.9	11.05	19.6	10.02
Merged-chr8-61387854-1	chr8	61387754	61387954	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021506, intron 11 of 11)	intron (NM_021506, intron 11 of 11)	-98982.0	NR_045475	69279.0	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	1.62	1.01	2.28	4.02	6.55	8.47	2.99	9.36	2.36	0.0	8.04	3.45
Merged-chr11-64600551-2	chr11	64600467	64600667	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-163893.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	7.67	3.27	10.27	15.28	16.36	12.54	12.29	16.04	2.75	6.03	17.59	2.19
Merged-chr18-56875389-2	chr18	56875331	56875531	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50117.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	8.48	5.28	11.98	10.05	9.82	5.33	8.64	11.58	4.52	3.01	6.03	2.82
Merged-chr17-35090160-2	chr17	35090043	35090243	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178592, intron 1 of 19)	intron (NM_178592, intron 1 of 19)	852.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	4.04	11.07	8.56	6.84	3.27	1.88	4.65	2.36	16.13	9.54	10.55	10.34
Merged-chr18-73752180-3	chr18	73752092	73752292	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	2287.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	14.94	8.3	6.85	7.24	12.68	6.27	4.32	9.67	20.85	37.16	41.71	15.66
Merged-chr2-73313286-2	chr2	73313186	73313386	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	634.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	5.65	6.29	10.27	4.83	9.82	11.29	4.32	9.06	10.62	17.07	7.54	11.9
Merged-chr10-81434158-2	chr10	81434040	81434240	+	790.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6967.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	8.48	5.28	4.56	4.83	8.59	10.35	11.63	16.46	8.65	7.53	17.59	11.28
Merged-chr5-24261274-3	chr5	24261169	24261369	+	790.894409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3741.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	12.11	9.31	12.55	6.84	9.41	12.23	2.99	10.88	16.52	15.06	16.08	6.58
Merged-chr4-3759068-3	chr4	3758970	3759170	+	790.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	44106.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	12.92	6.54	11.98	5.63	29.05	10.98	8.97	9.28	13.96	16.57	14.57	8.14
Merged-chr17-34455889-3	chr17	34455783	34455983	+	790.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	20054.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	14.54	13.33	28.52	24.53	5.73	8.78	7.31	4.37	15.74	7.03	13.06	8.77
Merged-chr7-63908838-3	chr7	63908741	63908941	+	790.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8016.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.85	10.56	3.99	16.09	9.41	9.09	8.64	4.91	11.41	8.03	10.55	1.57
Merged-chr18-84293719-3	chr18	84293594	84293794	+	790.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205536.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	12.92	8.05	6.85	7.64	9.82	11.92	10.63	9.81	10.03	15.06	16.08	9.08
Merged-chr5-12383471-3	chr5	12383386	12383586	+	790.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028882, exon 1 of 18)	5' UTR (NM_028882, exon 1 of 18)	320.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	8.48	9.56	15.4	13.67	8.18	9.41	6.98	15.53	18.49	11.55	21.61	7.21
Merged-chr3-109130337-3	chr3	109130253	109130453	+	790.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	7204.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	12.11	7.04	0.0	10.46	11.05	9.72	5.31	8.92	21.44	17.07	20.1	9.08
Merged-chr9-106341481-3	chr9	106341388	106341588	+	790.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-27144.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	12.11	12.58	11.41	13.27	22.09	15.99	12.29	26.8	9.44	7.03	10.55	6.27
Merged-chr1-39576041-4	chr1	39575936	39576136	+	790.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033135, intron 1 of 6)	intron (NM_001033135, intron 1 of 6)	1311.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	3.23	7.29	10.84	9.25	6.55	3.45	21.92	13.65	14.36	5.02	15.07	10.96
Merged-chr13-20800793-3	chr13	20800720	20800920	+	790.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	6707.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	15.75	8.05	7.99	6.84	15.55	13.48	6.64	6.56	24.78	22.59	20.6	6.27
Merged-chr8-79680716-3	chr8	79680638	79680838	+	790.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31002.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	16.56	10.82	10.84	16.89	9.41	12.23	12.29	9.56	8.26	9.54	8.04	6.27
Merged-chr9-120915279-2	chr9	120915181	120915381	+	790.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040742)	promoter-TSS (NR_040742)	-31.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.65	6.04	13.12	4.83	15.96	20.7	8.64	9.45	18.1	10.54	10.55	8.14
Merged-chr9-53741190-3	chr9	53741094	53741294	+	790.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30341.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	5.65	4.53	13.69	12.87	15.55	9.09	7.31	15.45	10.23	7.53	25.12	11.59
Merged-chr1-131246052-3	chr1	131245944	131246144	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-866.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	12.11	13.83	6.85	6.44	7.77	9.72	7.31	7.43	9.64	13.56	12.56	3.76
Merged-chr10-127479995-3	chr10	127479904	127480104	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-21682.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	16.15	8.3	6.85	9.25	13.5	8.78	4.65	6.98	18.88	13.56	10.05	5.64
Merged-chr13-109232081-3	chr13	109231984	109232184	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-92660.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	10.5	7.29	13.69	9.25	14.32	19.13	7.97	16.99	7.67	15.06	17.08	6.89
Merged-chr9-123525366-3	chr9	123525264	123525464	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4389.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	10.5	8.05	5.7	4.42	7.77	5.64	5.98	7.21	16.92	8.54	14.07	9.4
Merged-chr4-97767049-4	chr4	97766969	97767169	+	790.775024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-10557.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	8.08	8.05	7.99	9.25	3.27	5.64	3.65	3.45	13.57	6.03	7.03	9.08
Merged-chr9-113663661-3	chr9	113663556	113663756	+	790.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164678, intron 12 of 17)	B4A|SINE|B4	44603.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	8.88	8.55	19.4	15.69	5.32	5.96	10.3	18.62	11.6	14.06	17.59	11.28
Merged-chr10-126928348-2	chr10	126928249	126928449	+	790.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-26978.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	10.9	2.77	9.13	5.23	14.32	6.27	11.63	12.76	7.47	3.01	3.52	7.21
Merged-chr8-104436237-2	chr8	104436138	104436338	+	790.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013380, intron 4 of 12)	intron (NM_001013380, intron 4 of 12)	6809.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	4.85	3.02	7.42	5.63	16.36	21.64	15.94	19.82	10.23	10.54	10.05	5.95
Merged-chr2-72788972-2	chr2	72788881	72789081	+	790.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102348, intron 2 of 5)	intron (NR_102348, intron 2 of 5)	24736.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	1.62	4.78	15.97	9.25	2.45	1.25	2.66	1.71	30.88	14.06	31.15	19.11
Merged-chr4-132305451-3	chr4	132305362	132305562	+	790.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2106.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	13.33	5.79	7.42	4.42	9.0	9.72	14.62	12.84	14.95	7.03	12.56	10.34
Merged-chr11-70674699-3	chr11	70674562	70674762	+	790.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178116, exon 15 of 23)	exon (NM_178116, exon 15 of 23)	-5246.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	16.56	10.56	0.57	8.85	10.64	9.41	8.3	11.02	11.6	12.55	7.03	5.01
Merged-chr4-150002131-2	chr4	150002045	150002245	+	790.716675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173371, intron 1 of 4)	B3|SINE|B2	1091.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	7.67	4.53	13.12	5.23	11.05	16.31	10.63	7.71	8.26	17.07	19.09	15.66
Merged-chr1-169370920-1	chr1	169370820	169371020	+	790.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160544.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	4.85	2.01	7.42	16.09	9.82	3.14	10.3	7.43	2.75	4.52	2.01	2.82
Merged-chr7-109083325-1	chr7	109083225	109083425	+	790.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001038624)	promoter-TSS (NM_001038624)	-1.0	NM_178780	320360.0	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	6.06	5.53	6.85	8.04	11.86	5.96	5.65	8.5	6.49	6.03	9.04	4.39
Merged-chr15-73089710-3	chr15	73089615	73089815	+	790.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-697.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	12.52	5.79	9.7	2.41	13.91	19.44	8.97	7.6	15.93	8.03	30.15	7.21
Merged-chr12-17691488-3	chr12	17691384	17691584	+	790.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	CpG	675.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	8.48	11.57	6.28	10.86	10.64	11.29	14.28	6.87	11.41	7.53	8.04	11.28
Merged-chr3-21963186-1	chr3	21963086	21963286	+	790.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113466.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.85	7.04	10.27	4.42	6.14	6.9	8.3	7.82	4.52	2.01	7.03	1.57
Merged-chr4-133201348-3	chr4	133201259	133201459	+	790.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5704.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	6.46	7.8	23.39	11.66	17.59	15.05	3.99	10.77	7.67	13.56	13.06	7.83
Merged-chr4-133625024-2	chr4	133624917	133625117	+	790.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	8412.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	9.69	7.29	10.27	8.04	22.5	23.83	14.62	22.46	0.0	2.01	0.5	0.63
Merged-chr10-67302535-3	chr10	67302428	67302628	+	790.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17247.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	13.73	6.54	9.13	11.66	11.86	13.48	13.95	14.52	8.85	5.02	10.05	11.9
Merged-chr11-116412611-3	chr11	116412503	116412703	+	790.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 1 of 18)	CpG	429.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	16.96	6.54	11.98	6.84	16.36	13.17	9.97	5.83	9.83	12.55	14.07	9.08
Merged-chr18-6515082-3	chr18	6514987	6515187	+	790.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	1021.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	16.56	12.07	14.26	8.04	8.59	15.99	2.66	10.32	10.03	8.54	6.53	4.39
Merged-chr1-156803419-3	chr1	156803350	156803550	+	790.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001159965)	TTS (NM_001159965)	-35573.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	10.09	13.58	21.11	9.65	3.68	10.66	19.6	14.3	11.41	4.02	19.6	10.34
Merged-chr12-41417819-2	chr12	41417719	41417919	+	790.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	68238.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	9.69	3.02	15.4	15.69	10.23	4.39	11.29	20.36	7.28	5.02	10.05	5.33
Merged-chr19-45076926-2	chr19	45076840	45077040	+	790.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001362398, exon 3 of 6)	exon (NM_001362398, exon 3 of 6)	853.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	6.06	7.8	11.98	1.21	10.64	2.2	7.64	7.51	6.29	1.51	15.07	5.64
Merged-chr15-62162154-3	chr15	62162047	62162247	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	57304.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	8.88	17.1	9.13	5.23	9.41	20.7	6.98	12.7	14.55	12.05	5.53	5.95
Merged-chr5-67814650-3	chr5	67814574	67814774	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009727, exon 2 of 36)	exon (NM_009727, exon 2 of 36)	32757.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	14.13	7.55	10.84	10.05	9.0	15.68	16.94	16.37	20.65	10.04	13.06	14.72
Merged-chr11-95354259-3	chr11	95354108	95354308	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17190.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.44	3.77	10.27	2.01	2.45	2.82	3.32	3.93	11.6	6.53	6.53	8.77
Merged-chr4-152319017-3	chr4	152318840	152319040	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033489)	promoter-TSS (NM_001033489)	-315.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	2.83	7.8	3.42	6.03	4.09	2.82	5.31	9.0	5.11	4.52	3.01	5.01
Merged-chr19-6270041-3	chr19	6269938	6270138	+	790.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	5194.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	17.77	8.8	9.13	14.08	19.64	12.23	10.96	10.32	14.55	9.54	12.06	9.71
Merged-chr2-165056536-3	chr2	165056437	165056637	+	790.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	901.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	18.98	22.64	7.99	2.41	9.0	15.68	4.65	5.16	35.99	23.6	14.57	8.14
Merged-chr2-181537818-3	chr2	181537740	181537940	+	790.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	17355.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	9.69	6.54	8.56	16.09	11.45	9.41	9.63	16.68	11.8	9.04	7.03	13.78
Merged-chr19-6872832-3	chr19	6872741	6872941	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14630.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.67	14.84	13.12	7.64	9.41	19.13	5.65	9.98	16.72	10.04	23.62	10.96
Merged-chr5-122903518-2	chr5	122903421	122903621	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-3171.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.04	11.82	7.42	18.5	2.05	4.39	4.98	8.78	5.31	2.01	1.0	7.21
Merged-chr8-84285874-1	chr8	84285774	84285974	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15472.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	2.42	6.29	3.42	3.62	11.86	13.17	5.98	6.59	7.28	9.04	6.53	5.33
Merged-chr4-86713178-1	chr4	86713078	86713278	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35377.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.81	1.01	3.99	0.8	7.77	5.02	5.98	7.01	7.67	6.03	1.51	1.88
Merged-chr18-49553870-1	chr18	49553770	49553970	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30581.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.63	4.02	1.14	3.22	7.36	6.27	9.3	13.12	6.69	8.54	7.03	3.76
Merged-chr4-46565805-3	chr4	46565704	46565904	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	636.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.27	7.29	15.4	14.48	17.18	2.51	22.26	21.5	12.59	6.53	6.53	7.21
Merged-chr14-54431789-1	chr14	54431689	54431889	+	790.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008608, exon 1 of 10)	5' UTR (NM_008608, exon 1 of 10)	191.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	4.04	0.75	3.42	1.61	0.41	2.51	2.33	2.44	1.57	6.53	2.51	2.82
Merged-chr8-106892590-1	chr8	106892490	106892690	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	1003.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	2.42	0.0	3.99	1.21	4.09	6.59	7.64	3.81	5.11	3.51	6.03	5.95
Merged-chr3-127793707-2	chr3	127793652	127793852	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	3095.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	12.11	8.05	16.54	4.83	6.14	7.21	3.32	9.79	9.44	3.51	3.01	4.07
Merged-chr7-100474139-1	chr7	100474039	100474239	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.5	4.56	0.4	6.55	5.64	2.33	0.08	1.38	3.51	0.0	1.25
Merged-chr5-72173205-1	chr5	72173105	72173305	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5016.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	6.86	2.01	7.99	0.8	6.95	6.9	7.31	6.39	4.52	6.03	3.52	2.51
Merged-chr14-54402819-1	chr14	54402719	54402919	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	ORR1D1|LTR|ERVL-MaLR	6653.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.04	3.52	5.13	0.0	6.95	8.47	4.65	11.44	1.57	1.51	2.01	0.94
Merged-chr19-28010775-2	chr19	28010631	28010831	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	435.0	NM_011265	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	2.42	3.02	0.57	9.65	5.32	1.88	14.28	7.01	6.88	5.02	11.05	4.07
Merged-chr3-138889403-1	chr3	138889303	138889503	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121195, intron 2 of 7)	intron (NR_121195, intron 2 of 7)	147195.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	1.62	3.27	1.14	6.44	9.82	5.96	7.97	8.07	7.67	6.03	9.04	10.96
Merged-chr19-53451002-2	chr19	53450873	53451073	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	13823.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	7.27	5.28	3.42	6.44	5.73	11.29	27.57	25.51	0.98	2.01	3.52	2.82
Merged-chr2-27770337-5	chr2	27770127	27770327	+	790.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59644.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	10.5	14.84	13.69	3.62	6.95	19.13	5.31	3.14	5.11	6.53	2.01	3.76
Merged-chr13-19377366-3	chr13	19377264	19377464	+	790.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	18449.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	12.92	6.29	10.27	8.85	5.73	7.53	5.31	7.85	21.24	14.06	21.61	4.7
Merged-chr2-25256961-3	chr2	25256858	25257058	+	790.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177344)	TTS (NM_177344)	1519.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	25.04	17.36	14.83	9.25	13.09	16.31	1.99	3.25	10.23	7.53	8.04	6.58
Merged-chr10-53377244-3	chr10	53377108	53377308	+	790.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	2643.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	9.29	8.55	5.13	3.22	3.68	11.29	4.32	5.21	14.95	14.56	16.08	8.46
Merged-chr10-88676383-3	chr10	88676279	88676479	+	790.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 5 of 5)	intron (NM_011461, intron 5 of 5)	6644.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	9.69	9.56	9.7	16.89	19.64	13.8	7.31	10.15	7.67	10.54	13.57	12.84
Merged-chr2-14236305-3	chr2	14236225	14236425	+	790.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	MTD|LTR|ERVL-MaLR	6911.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	12.52	13.58	9.13	8.85	10.23	11.92	7.64	18.25	12.0	12.55	4.52	9.71
Merged-chr7-125542771-3	chr7	125542682	125542882	+	790.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9500.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	8.48	9.31	14.83	9.25	6.14	12.86	5.98	11.07	20.06	7.53	16.08	22.87
Merged-chr6-116124268-1	chr6	116124168	116124368	+	790.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MT2B2|LTR|ERVL	69106.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.23	1.51	9.13	3.62	9.0	8.47	6.31	10.77	4.13	4.52	13.06	3.76
Merged-chr10-105508551-1	chr10	105508451	105508651	+	790.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	65928.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.63	4.28	0.0	6.84	7.77	9.09	12.29	11.64	3.34	6.53	7.54	2.82
Merged-chr11-88069112-3	chr11	88069015	88069215	+	790.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016686, intron 1 of 5)	CpG	836.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	10.5	8.3	11.98	2.82	18.0	11.92	7.97	5.33	28.72	9.54	11.05	10.65
Merged-chr4-32280562-3	chr4	32280471	32280671	+	790.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136864.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.44	13.08	11.98	10.86	17.59	14.42	14.28	17.02	8.26	10.04	13.57	10.65
Merged-chr4-95924471-3	chr4	95924357	95924557	+	790.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42578.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	12.11	10.56	11.98	0.8	6.95	4.39	6.31	11.21	18.49	11.05	30.15	24.75
Merged-chr2-116943342-5	chr2	116943247	116943447	+	790.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	43195.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	11.31	4.28	2.28	4.42	3.27	6.9	13.62	7.71	8.06	6.53	7.54	3.45
Merged-chr7-126099210-3	chr7	126099120	126099320	+	790.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16809.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	9.29	7.55	4.56	8.45	4.5	3.14	11.96	8.02	7.87	8.54	3.52	9.08
Merged-chr18-39876015-2	chr18	39875914	39876114	+	790.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102517.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.85	4.02	0.57	9.25	7.77	5.96	2.99	4.26	16.92	17.07	18.59	5.33
Merged-chr19-21273652-2	chr19	21273565	21273765	+	790.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	1387.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	4.04	5.03	2.28	2.41	5.73	9.09	3.32	7.37	12.39	4.02	13.57	10.02
Merged-chr2-28514689-3	chr2	28514556	28514756	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	1489.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	14.54	9.06	1.71	2.01	4.5	6.27	11.63	4.32	13.77	21.59	3.01	4.39
Merged-chr12-112632495-1	chr12	112632395	112632595	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 3 of 12)	intron (NM_007421, intron 3 of 12)	-12333.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	1.62	5.79	7.99	10.05	9.41	9.41	4.98	8.21	3.93	3.51	5.02	9.08
Merged-chr19-23015675-1	chr19	23015575	23015775	+	790.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125551.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.81	0.0	1.14	0.4	3.68	4.08	3.65	4.99	14.75	11.55	17.08	4.07
Merged-chr2-61514205-2	chr2	61514092	61514292	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64394.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	9.29	5.79	3.99	15.69	12.27	9.72	12.95	15.5	2.75	3.01	7.03	7.52
Merged-chr9-108341234-4	chr9	108341120	108341320	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001329528)	TTS (NM_001329528)	2140.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	7.67	9.06	5.7	6.84	6.95	12.23	12.95	11.16	13.96	12.05	14.57	11.9
Merged-chr15-100780142-1	chr15	100780042	100780242	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021530, intron 2 of 24)	intron (NM_021530, intron 2 of 24)	-1112.0	NM_001347102	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	18.98	10.82	13.69	13.67	1.64	0.63	0.66	7.18	3.74	3.01	5.02	8.46
Merged-chrUn_GL456370-8050-1	chrUn_GL456370	7950	8150	+	790.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.77	0.5	13.06	9.08
Merged-chr10-94082471-3	chr10	94082365	94082565	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 3 of 20)	intron (NM_053072, intron 3 of 20)	46464.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	11.31	11.57	5.7	12.47	1.23	13.8	5.98	7.77	32.45	8.54	31.66	17.23
Merged-chr13-52507675-1	chr13	52507575	52507775	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024474, exon 2 of 2)	exon (NM_001024474, exon 2 of 2)	23161.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	6.06	3.52	5.7	10.05	8.59	3.45	6.31	7.12	5.7	0.0	4.02	1.57
Merged-chr15-67099027-1	chr15	67098927	67099127	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77855.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.46	6.54	6.85	2.41	10.23	7.84	0.66	8.1	11.01	2.01	4.52	4.39
Merged-chr14-55605035-3	chr14	55604946	55605146	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159418, intron 1 of 8)	intron (NM_001159418, intron 1 of 8)	467.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	10.5	6.79	9.7	8.45	7.77	8.78	8.3	8.89	16.13	10.04	16.58	10.02
Merged-chr10-22157590-1	chr10	22157490	22157690	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359809)	promoter-TSS (NM_001359809)	-979.0	NM_001359809	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	5.65	3.52	0.0	5.23	9.41	6.59	4.98	8.92	0.79	2.01	4.52	0.0
Merged-chr18-53743875-1	chr18	53743775	53743975	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	672.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	6.86	7.8	2.28	5.63	4.09	5.02	9.97	3.45	5.31	9.04	5.02	8.46
Merged-chr8-40995057-3	chr8	40994979	40995179	+	790.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-22389.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	8.48	15.34	8.56	8.04	13.91	9.72	10.3	13.32	10.03	12.05	9.55	12.22
Merged-chrX-155195184-3	chrX	155195111	155195311	+	790.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21238.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	11.71	5.28	5.13	6.03	10.23	11.29	4.32	12.67	21.44	24.6	17.08	9.08
Merged-chr1-106797506-3	chr1	106797416	106797616	+	790.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-791.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	8.48	9.06	11.98	4.42	3.68	6.9	5.65	10.46	23.6	12.55	21.61	9.4
Merged-chr7-16056721-3	chr7	16056674	16056874	+	790.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15071.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.67	7.55	7.42	5.23	7.77	6.27	5.65	5.86	6.69	9.54	12.06	14.1
Merged-chr15-80006353-1	chr15	80006253	80006453	+	790.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	-7327.0	NR_106072	102465699.0		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	2.42	3.77	0.0	9.65	11.05	8.15	3.99	7.65	3.74	1.51	2.01	0.31
Merged-chr2-163716613-2	chr2	163716511	163716711	+	790.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	22574.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	1.62	5.79	6.85	6.03	5.32	8.15	4.98	13.01	5.51	9.54	14.07	11.28
Merged-chr13-51099548-3	chr13	51099445	51099645	+	790.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_029463, exon 1 of 1)	non-coding (NR_029463, exon 1 of 1)	1182.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	7.27	8.3	18.83	14.08	25.77	9.41	5.31	11.41	16.52	12.55	12.06	9.71
Merged-chr13-6633626-3	chr13	6633524	6633724	+	790.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	15147.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	11.71	14.84	18.83	10.46	6.95	5.64	7.64	11.83	26.55	5.52	22.11	8.77
Merged-chr4-43479680-3	chr4	43479570	43479770	+	790.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4039.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	19.38	6.79	9.13	3.22	16.36	7.84	4.65	11.94	29.9	20.08	12.56	7.52
Merged-chr10-111118547-3	chr10	111118438	111118638	+	790.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-46264.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.65	9.31	5.7	14.08	7.77	8.78	4.32	9.7	18.49	6.53	13.57	6.58
Merged-chr6-51524468-4	chr6	51524454	51524654	+	790.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	294.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.44	13.33	10.27	10.46	7.77	12.23	10.63	4.09	6.29	14.06	9.04	1.88
Merged-chr7-114086300-3	chr7	114086193	114086393	+	790.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	31488.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.86	8.05	3.42	11.26	6.14	12.54	9.97	12.5	18.49	12.05	11.56	7.52
Merged-chr8-103970666-1	chr8	103970566	103970766	+	790.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-130959.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	1.01	1.14	4.83	8.18	10.98	11.96	8.61	6.49	7.03	8.04	0.31
Merged-chr14-55863952-3	chr14	55863811	55864011	+	790.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001040072, exon 3 of 8)	exon (NM_001040072, exon 3 of 8)	9796.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	11.31	15.85	9.13	12.07	12.68	11.29	3.32	5.75	9.64	6.53	3.52	6.27
Merged-chr6-86822768-1	chr6	86822668	86822868	+	790.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26672.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	1.62	4.53	1.14	6.84	11.45	7.21	10.96	13.12	7.08	7.03	8.04	10.96
Merged-chr19-59239550-3	chr19	59239403	59239603	+	790.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19855.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	2.42	5.03	3.99	10.46	4.09	5.33	7.31	3.93	7.47	6.03	10.55	8.46
Merged-chr6-108449227-2	chr6	108449058	108449258	+	790.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-40585.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.02	3.52	1.71	7.24	5.73	5.33	6.98	4.21	6.1	9.04	4.52	6.27
Merged-chr18-47368969-2	chr18	47368859	47369059	+	790.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018744)	promoter-TSS (NM_018744)	-89.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.23	6.04	0.57	11.26	13.09	14.74	11.96	28.93	5.11	5.02	4.02	1.88
Merged-chr2-18939071-2	chr2	18938971	18939171	+	790.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	59050.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	9.69	4.78	1.14	7.24	11.86	9.41	8.3	12.79	3.93	6.53	2.01	6.27
Merged-chr9-120936522-3	chr9	120936420	120936620	+	790.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	2942.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	10.09	8.55	12.55	8.04	9.82	6.59	3.32	5.16	15.74	13.56	14.57	5.01
Merged-chr11-72518706-3	chr11	72518617	72518817	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029932, intron 8 of 11)	MTD|LTR|ERVL-MaLR	-28797.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	15.75	6.54	14.26	8.04	9.82	28.22	7.31	7.79	23.6	23.1	13.06	6.27
Merged-chr16-56647021-3	chr16	56646919	56647119	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014399, intron 12 of 27)	intron (NM_001014399, intron 12 of 27)	70431.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	14.54	14.09	23.96	12.87	14.73	16.62	6.98	20.1	15.54	5.02	11.05	5.95
Merged-chr2-71598987-3	chr2	71598899	71599099	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-52245.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	7.67	7.8	5.13	5.23	11.05	11.29	7.64	10.46	12.39	12.55	19.6	10.34
Merged-chr10-17416305-3	chr10	17416217	17416417	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-306911.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	10.9	12.83	5.7	4.83	8.59	12.86	16.28	13.51	12.39	18.08	20.6	6.89
Merged-chr9-25522109-3	chr9	25522018	25522218	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	40521.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	8.48	7.8	12.55	8.04	8.59	16.62	15.61	17.61	12.59	25.11	14.07	8.77
Merged-chr3-31446591-2	chr3	31446479	31446679	+	790.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136260.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.81	2.01	2.28	2.41	10.64	20.38	8.97	14.94	11.41	13.56	26.13	8.14
Merged-chrX-140697820-3	chrX	140697717	140697917	+	790.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358367, intron 3 of 9)	intron (NM_001358367, intron 3 of 9)	32861.0	NM_001358366	23947.0	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	12.52	4.02	7.99	16.09	15.55	11.29	21.59	13.12	19.47	7.03	10.05	9.4
Merged-chr5-76853806-2	chr5	76853759	76853959	+	790.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163793, intron 4 of 8)	intron (NM_001163793, intron 4 of 8)	13260.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	2.83	3.52	0.0	2.82	4.91	8.47	3.65	6.22	6.69	4.02	10.55	3.45
Merged-chr3-27692421-3	chr3	27692320	27692520	+	790.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18032.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	12.52	9.56	13.12	8.45	6.55	14.74	8.97	12.06	12.59	5.52	17.59	10.02
Merged-chr3-103169980-3	chr3	103169879	103170079	+	790.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177857)	TTS (NM_177857)	-1676.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	10.5	7.8	9.13	9.25	9.0	9.41	3.65	13.37	21.44	24.1	17.59	10.02
Merged-chr5-64385117-2	chr5	64385024	64385224	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	82818.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.85	4.78	12.55	8.04	18.41	14.11	5.98	9.0	10.23	6.53	10.05	6.58
Merged-chr12-32280308-2	chr12	32280200	32280400	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-71651.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.44	4.02	6.85	2.82	9.0	7.21	5.31	8.64	8.46	16.57	13.57	3.76
Merged-chr15-12052009-1	chr15	12051909	12052109	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56002.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	2.83	5.03	2.28	1.21	2.45	3.76	4.65	8.24	3.93	9.04	9.55	1.57
Merged-chr15-67235311-1	chr15	67235211	67235411	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	8542.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.65	0.5	3.99	3.22	6.14	6.9	4.32	9.06	2.95	1.51	2.51	5.95
Merged-chr17-10675249-1	chr17	10675149	10675349	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	164942.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.83	4.28	3.42	12.07	10.64	8.47	10.96	16.26	6.88	5.52	17.08	4.07
Merged-chr3-8669941-1	chr3	8669841	8670041	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2903.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.83	2.77	3.99	7.24	4.91	6.27	2.66	11.36	4.92	3.01	7.54	2.51
Merged-chr11-53309052-1	chr11	53308952	53309152	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8573.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	2.42	1.01	6.85	4.83	0.41	3.14	8.64	5.92	2.56	2.51	14.07	2.82
Merged-chr18-49609488-1	chr18	49609388	49609588	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86199.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.23	3.27	8.56	7.64	9.82	10.03	5.65	27.28	11.6	3.01	9.04	5.64
Merged-chr17-15652034-3	chr17	15651965	15652165	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20277.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	12.92	9.31	6.28	6.84	7.77	5.64	4.32	8.8	7.87	15.57	7.54	8.46
Merged-chrX-103821966-1	chrX	103821866	103822066	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009197)	promoter-TSS (NM_009197)	22.0	NM_009197	20502.0	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	4.04	4.02	7.99	8.45	3.27	6.59	10.63	8.27	6.29	2.01	9.55	3.45
Merged-chr1-151581818-2	chr1	151581716	151581916	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	HAL1M8|LINE|L1	10443.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.65	3.27	4.56	4.83	15.96	12.23	10.96	13.09	8.46	8.03	10.05	4.7
Merged-chr1-173732860-1	chr1	173732760	173732960	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204910, intron 3 of 7)	Lx7|LINE|L1	8949.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	2.42	5.53	1.14	1.21	8.18	10.35	0.33	0.22	2.95	3.01	0.5	0.94
Merged-chr11-44539415-1	chr11	44539315	44539515	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	20038.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.23	4.28	6.85	10.86	2.45	8.78	3.32	10.01	6.69	4.02	5.02	2.19
Merged-chr7-64388918-1	chr7	64388818	64389018	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026483, exon 3 of 11)	exon (NM_026483, exon 3 of 11)	3318.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	4.44	4.53	5.13	5.23	5.73	8.78	4.65	7.12	15.14	6.53	6.03	4.39
Merged-chr19-24164172-1	chr19	24164072	24164272	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	10017.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	12.11	8.3	9.13	16.89	1.23	0.0	0.0	0.39	1.77	3.01	3.52	1.88
Merged-chr17-13761500-3	chr17	13761403	13761603	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022311)	promoter-TSS (NM_022311)	-109.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	4.44	7.29	0.57	10.86	4.91	7.53	4.65	7.4	11.21	13.56	12.06	10.34
Merged-chr18-62170735-1	chr18	62170635	62170835	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9246.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	13.33	7.29	0.57	0.8	2.86	8.47	1.99	0.34	2.16	3.01	4.02	2.51
Merged-chr6-136620967-1	chr6	136620867	136621067	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025806, intron 6 of 10)	intron (NM_025806, intron 6 of 10)	40926.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	8.48	7.55	2.28	7.24	14.73	10.35	4.98	8.24	3.54	3.51	6.53	2.19
Merged-chr1-136657734-2	chr1	136657640	136657840	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-25656.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	8.08	2.01	11.41	11.26	4.09	3.76	12.29	11.16	4.13	2.51	8.04	2.51
Merged-chr6-34870352-2	chr6	34870261	34870461	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	PB1D10|SINE|Alu	7215.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	9.29	3.77	0.0	3.62	8.59	6.59	3.65	10.51	8.85	5.02	12.06	11.28
Merged-chr12-102357012-2	chr12	102356901	102357101	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	73360.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	7.27	7.8	4.56	8.85	0.82	1.88	0.66	0.9	25.96	8.03	20.1	13.78
Merged-chr16-17759215-1	chr16	17759115	17759315	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-406.0	NM_145479	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	6.06	8.05	13.69	6.84	15.96	5.02	7.31	7.51	9.64	4.52	6.53	3.76
Merged-chr11-30773127-1	chr11	30773027	30773227	+	790.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	1352.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	4.04	1.51	3.42	2.82	2.86	5.02	4.98	4.23	8.46	7.03	12.56	2.19
Merged-chr18-52614211-1	chr18	52614111	52614311	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1704.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	1.62	2.52	5.7	3.62	3.68	4.39	5.98	8.78	6.88	7.53	7.03	7.83
Merged-chr19-34959591-1	chr19	34959491	34959691	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183046, intron 25 of 31)	intron (NM_183046, intron 25 of 31)	-5805.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0.0	1.01	1.14	0.0	1.23	1.88	6.31	9.34	6.69	6.53	9.04	3.45
Merged-chr2-71787373-1	chr2	71787273	71787473	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008397, intron 1 of 25)	CpG	434.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	3.63	4.02	1.14	4.42	1.64	2.51	1.0	4.32	4.92	2.51	7.03	4.7
Merged-chr10-121263677-2	chr10	121263568	121263768	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029057)	TTS (NM_029057)	47728.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	12.92	1.76	3.42	7.24	22.09	29.48	15.94	27.36	7.67	15.06	10.55	6.89
Merged-chr10-95086905-1	chr10	95086805	95087005	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58920.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	1.21	2.01	5.13	0.8	6.95	3.76	3.32	7.54	4.72	2.01	4.52	4.07
Merged-chr18-9505920-2	chr18	9505802	9506002	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55748.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.23	7.8	0.57	1.21	12.68	3.45	7.31	10.46	6.49	9.54	8.04	8.77
Merged-chr1-138174345-1	chr1	138174245	138174445	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	781.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.44	3.27	1.14	6.44	3.27	12.86	1.0	5.61	4.52	7.53	4.52	5.33
Merged-chr17-5975866-2	chr17	5975788	5975988	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	302.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	6.46	7.8	3.99	6.03	9.41	5.02	4.65	7.35	3.54	1.51	10.55	3.76
Merged-chr15-67088794-1	chr15	67088694	67088894	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	88088.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.23	3.77	5.7	9.65	9.82	12.54	5.31	6.2	1.57	4.52	4.52	5.01
Merged-chr12-112552209-3	chr12	112552103	112552303	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36581.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	11.71	10.56	11.41	14.48	13.09	13.48	8.3	15.11	14.16	10.54	13.57	8.46
Merged-chr13-45330641-1	chr13	45330541	45330741	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.21	2.52	6.28	0.8	3.68	3.14	5.98	8.07	1.77	4.02	1.0	2.51
Merged-chr6-48687297-1	chr6	48687197	48687397	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001243199, intron 2 of 3)	intron (NM_001243199, intron 2 of 3)	2719.0	NM_001243201	107526.0	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	13.33	9.31	11.98	12.87	0.0	0.63	1.0	1.93	3.15	7.53	5.53	6.89
Merged-chr8-105347159-3	chr8	105347058	105347258	+	789.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	812.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	17.36	16.85	5.13	17.7	11.86	16.31	5.31	6.53	11.8	15.06	14.57	13.47
Merged-chr1-39901424-5	chr1	39901343	39901543	+	789.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 1 of 29)	CpG	530.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	12.11	6.29	5.7	4.42	11.05	5.64	12.29	6.39	7.28	5.52	8.54	8.14
Merged-chr19-55818149-2	chr19	55818050	55818250	+	789.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	76340.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.27	6.79	7.99	8.04	16.36	12.23	8.3	16.15	12.78	9.54	13.57	5.01
Merged-chr11-118216042-3	chr11	118215990	118216190	+	789.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	MTD|LTR|ERVL-MaLR	-3348.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.88	6.29	5.13	11.26	9.0	18.19	12.95	12.34	5.51	3.01	11.05	5.01
Merged-chr11-78267998-3	chr11	78267876	78268076	+	789.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002004, intron 11 of 38)	intron (NM_001002004, intron 11 of 38)	6222.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	11.71	6.04	14.83	14.08	10.64	8.47	9.3	9.64	12.98	6.03	10.05	9.08
Merged-chr2-157458639-2	chr2	157458538	157458738	+	789.924988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 5 of 13)	intron (NM_001025395, intron 5 of 13)	34345.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	12.52	4.28	4.56	6.84	9.0	14.42	6.64	7.32	9.44	18.58	13.57	9.08
Merged-chr7-126194336-3	chr7	126194236	126194436	+	789.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	6165.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	10.9	16.1	10.84	10.46	16.36	27.59	7.64	12.73	22.42	20.59	13.06	6.58
Merged-chr5-122925655-3	chr5	122925572	122925772	+	789.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 11 of 22)	intron (NM_001003953, intron 11 of 22)	-25322.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	16.96	11.82	4.56	6.44	15.55	17.56	4.65	5.72	8.85	4.02	5.02	8.14
Merged-chr6-43645338-2	chr6	43645233	43645433	+	789.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	20945.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	12.92	4.02	11.98	4.83	12.27	10.66	9.97	14.55	3.15	9.54	5.02	5.33
Merged-chr1-55430447-3	chr1	55430345	55430545	+	789.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24499.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	8.88	8.3	19.4	26.55	40.91	49.54	62.78	52.23	9.83	4.02	17.59	1.25
Merged-chr1-52847796-3	chr1	52847708	52847908	+	789.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146108, intron 1 of 13)	MTC|LTR|ERVL-MaLR	2770.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	8.08	14.34	18.25	10.05	5.73	5.64	8.64	14.58	14.55	11.55	7.54	5.33
Merged-chr2-18816222-3	chr2	18816123	18816323	+	789.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14405.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	9.69	7.55	11.98	15.28	11.45	5.64	13.95	18.56	11.21	6.53	27.13	10.96
Merged-chr2-75588770-2	chr2	75588671	75588871	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70488.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	6.86	7.8	15.4	9.25	11.45	14.42	6.64	12.56	12.78	12.05	19.6	6.58
Merged-chr8-115311135-2	chr8	115311020	115311220	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	395774.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.23	6.79	3.99	5.23	16.36	7.53	7.97	7.04	12.0	17.07	8.54	6.58
Merged-chr5-66016314-2	chr5	66016206	66016406	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001127382)	TTS (NM_001127382)	-12021.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	3.23	8.05	3.42	1.61	10.64	7.84	3.32	5.58	14.36	8.03	14.07	10.34
Merged-chr13-91656801-2	chr13	91656698	91656898	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360775, intron 5 of 16)	intron (NM_001360775, intron 5 of 16)	-84723.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.04	5.53	5.13	11.66	21.27	9.41	14.62	16.54	4.52	7.03	9.04	5.64
Merged-chr11-76593856-2	chr11	76593774	76593974	+	789.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16135.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.06	3.52	2.85	5.23	5.73	4.39	7.31	9.36	12.19	11.55	15.58	15.35
Merged-chr8-61558701-4	chr8	61558515	61558715	+	789.854187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32554.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.44	7.29	1.71	6.03	5.73	1.25	7.31	2.83	5.51	4.02	4.52	5.01
Merged-chr12-100639954-2	chr12	100639847	100640047	+	789.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153587, intron 3 of 17)	intron (NM_153587, intron 3 of 17)	85173.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	4.44	10.82	16.54	18.5	4.5	10.98	3.65	5.61	3.93	7.53	4.52	6.58
Merged-chr16-95825355-3	chr16	95825258	95825458	+	789.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73355.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	9.69	8.55	10.84	8.45	16.77	9.72	19.27	14.24	10.82	19.58	10.55	10.02
Merged-chrX-134809086-1	chrX	134808986	134809186	+	789.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001166397, exon 1 of 6)	5' UTR (NM_001166397, exon 1 of 6)	135.0	NM_001166397	67416.0	Mm.285969	NM_026139	ENSMUSG00000033436	Armcx2	3230401N03Rik|AI043003|ALEX2	armadillo repeat containing, X-linked 2	protein-coding	0.0	0.75	4.56	4.02	9.41	6.27	8.97	7.85	1.97	2.51	4.02	3.45
Merged-chr10-7271633-3	chr10	7271572	7271772	+	789.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59435.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	8.48	2.01	9.13	21.32	11.45	11.6	22.59	26.61	6.49	5.02	14.57	4.39
Merged-chr15-96660951-3	chr15	96660806	96661006	+	789.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17993.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	7.27	5.53	9.13	5.63	12.68	11.6	10.3	9.76	7.08	11.05	7.54	6.27
Merged-chr2-167776245-2	chr2	167776116	167776316	+	789.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85039.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	9.69	5.28	5.13	3.22	5.73	9.09	4.98	4.91	12.39	2.51	6.53	7.21
Merged-chr9-47531289-4	chr9	47531172	47531372	+	789.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	CpG	920.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.67	5.53	7.99	4.42	6.55	10.98	11.63	7.93	13.37	11.05	7.03	8.14
Merged-chr15-79946194-3	chr15	79946113	79946313	+	789.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13567.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	15.75	8.8	10.27	9.25	13.09	13.8	6.64	7.26	11.6	18.08	18.59	7.83
Merged-chr2-10005405-3	chr2	10005292	10005492	+	789.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	43217.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	10.09	12.07	12.55	8.04	12.27	12.23	7.64	19.23	19.67	11.55	18.59	12.22
Merged-chr4-49607304-2	chr4	49607224	49607424	+	789.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-9448.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	7.67	3.77	10.27	4.83	7.36	7.84	10.63	11.86	11.6	9.04	14.57	13.47
Merged-chr12-102425547-2	chr12	102425454	102425654	+	789.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	B1_Mur4|SINE|Alu	14259.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.85	3.77	4.56	8.45	4.5	9.41	4.65	10.93	10.23	5.02	6.53	8.77
Merged-chr10-13837177-3	chr10	13837075	13837275	+	789.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31782.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	11.71	8.8	17.68	7.64	23.32	19.13	10.63	15.76	8.06	6.03	11.05	7.52
Merged-chr3-115715143-4	chr3	115715054	115715254	+	789.737488	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	-99.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.46	4.28	11.41	6.84	11.86	11.92	12.29	13.37	11.41	7.53	11.56	7.52
Merged-chr12-32656257-3	chr12	32656171	32656371	+	789.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-164064.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.86	2.77	1.71	9.65	11.05	6.59	5.98	7.6	11.8	6.03	19.09	12.22
Merged-chr1-176836862-3	chr1	176836775	176836975	+	789.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037996)	promoter-TSS (NR_037996)	-742.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	8.08	12.83	11.41	30.97	7.36	9.09	13.95	7.85	13.37	10.04	12.06	16.6
Merged-chr15-18821583-3	chr15	18821471	18821671	+	789.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	1242.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	6.86	5.28	8.56	4.83	10.23	9.72	12.95	19.93	24.78	15.57	23.62	9.08
Merged-chr11-83593645-3	chr11	83593542	83593742	+	789.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	-555.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	13.73	7.55	12.55	8.45	11.05	13.8	7.64	17.86	17.7	23.1	11.05	6.27
Merged-chrX-168648005-1	chrX	168647905	168648105	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25897.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	2.02	1.01	4.56	4.42	4.91	7.84	8.64	12.31	1.38	1.51	8.54	6.58
Merged-chr19-5796876-3	chr19	5796828	5797028	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144621)	promoter-TSS (NR_144621)	-947.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	8.88	11.82	10.27	6.44	11.45	12.54	4.32	0.67	9.24	12.55	6.53	5.64
Merged-chr2-73819019-1	chr2	73818919	73819119	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001284376, exon 15 of 15)	exon (NM_001284376, exon 15 of 15)	-43673.0	NM_001113246	108699.0	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	6.46	8.8	13.12	12.47	1.64	0.0	0.66	1.43	0.39	0.0	0.0	0.94
Merged-chr9-16114949-1	chr9	16114849	16115049	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240393.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	1.62	3.52	12.55	7.24	8.18	3.45	9.97	8.07	8.46	7.53	15.07	8.14
Merged-chr10-37359521-1	chr10	37359421	37359621	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-220595.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.63	4.78	9.7	3.62	8.18	9.41	8.64	8.86	6.88	2.51	9.04	5.95
Merged-chr11-35091122-1	chr11	35091022	35091222	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30334.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	5.65	11.32	5.7	3.22	10.23	15.05	6.31	17.24	0.79	3.01	2.51	4.07
Merged-chr8-24725888-1	chr8	24725788	24725988	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009619)	promoter-TSS (NM_009619)	-36.0	NM_001324489	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	5.65	5.79	7.99	5.63	6.14	7.53	10.63	9.93	4.92	2.01	5.02	1.25
Merged-chr6-87130252-3	chr6	87130159	87130359	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25513.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	11.31	11.07	13.12	4.42	4.91	11.29	7.31	12.11	13.18	7.03	7.03	7.52
Merged-chrX-155169769-1	chrX	155169669	155169869	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-21920.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	1.62	0.25	1.71	1.61	2.45	7.21	8.3	9.08	2.56	4.52	2.51	7.21
Merged-chr4-53158061-3	chr4	53157974	53158174	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1821.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	9.69	9.56	1.14	14.08	15.55	10.66	8.64	6.42	13.57	8.03	6.03	6.89
Merged-chr17-31289277-2	chr17	31289176	31289376	+	789.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6207.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	7.67	8.3	12.55	12.47	11.05	8.78	1.0	7.49	6.88	5.02	3.52	4.07
Merged-chr6-108433044-2	chr6	108432936	108433136	+	789.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 42 of 61)	intron (NM_010585, intron 42 of 61)	-56707.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.65	3.27	8.56	10.05	15.96	12.54	10.96	17.33	9.83	9.04	5.53	5.64
Merged-chr12-12279511-2	chr12	12279409	12279609	+	789.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	17370.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.25	8.55	7.42	4.83	15.55	10.66	13.29	17.86	15.14	5.52	11.05	7.52
Merged-chr13-107836423-2	chr13	107836312	107836512	+	789.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	53652.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	10.09	4.02	15.97	10.46	10.23	5.02	4.98	11.94	6.1	1.51	3.52	1.25
Merged-chr6-5425647-2	chr6	5425520	5425720	+	789.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355662, intron 3 of 4)	intron (NM_001355662, intron 3 of 4)	35210.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	6.06	3.77	7.42	14.48	6.14	8.47	8.3	14.13	8.46	6.03	10.55	11.9
Merged-chr2-152414844-3	chr2	152414696	152414896	+	789.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289738)	promoter-TSS (NM_001289738)	248.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	5.25	7.55	5.13	5.23	23.32	7.84	4.32	13.26	13.96	7.53	11.05	10.02
Merged-chr15-76794968-3	chr15	76794864	76795064	+	789.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	23206.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	13.33	8.3	17.11	22.12	17.59	15.05	12.29	17.8	14.55	9.54	11.05	7.21
Merged-chr16-33820944-3	chr16	33820853	33821053	+	789.627747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8712.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	9.69	12.32	9.13	11.26	20.05	17.56	5.31	20.55	26.16	19.08	12.56	8.14
Merged-chr10-71262631-3	chr10	71262527	71262727	+	789.616699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	22635.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	8.08	13.08	9.13	9.25	14.73	9.09	5.98	15.64	14.75	19.08	19.6	6.58
Merged-chr10-128057907-3	chr10	128057813	128058013	+	789.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1069.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	18.57	15.09	17.11	9.65	17.59	21.01	7.64	13.82	22.03	13.05	7.54	7.52
Merged-chr1-182281553-1	chr1	182281453	182281653	+	789.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007853, intron 1 of 2)	intron (NM_007853, intron 1 of 2)	642.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.4	2.77	2.28	2.41	6.55	12.23	7.64	4.82	7.08	8.54	4.02	1.25
Merged-chr3-79936331-1	chr3	79936231	79936431	+	789.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	50401.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	2.42	0.5	2.28	0.4	8.18	9.09	17.27	14.78	0.98	4.52	1.51	5.01
Merged-chr1-128643666-3	chr1	128643549	128643749	+	789.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51350.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.83	5.79	8.56	6.84	11.86	12.86	16.61	9.06	10.03	8.54	15.07	3.76
Merged-chr19-34196751-3	chr19	34196671	34196871	+	789.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3837.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	10.5	9.56	15.97	12.47	20.86	12.23	8.64	12.31	12.78	23.1	3.01	7.52
Merged-chr11-75192934-3	chr11	75192782	75192982	+	789.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-1111.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	8.48	5.03	12.55	5.63	7.77	6.9	7.64	6.22	14.36	12.05	9.55	10.65
Merged-chr4-130792655-8	chr4	130792538	130792738	+	789.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011520, exon 1 of 5)	5' UTR (NM_011520, exon 1 of 5)	101.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	9.69	6.29	15.97	8.04	7.36	18.5	6.98	10.32	15.14	10.54	19.6	14.1
Merged-chr1-138912432-1	chr1	138912332	138912532	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35482.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	4.44	2.77	1.71	0.8	6.95	14.42	7.31	15.67	7.28	5.02	15.58	5.01
Merged-chr16-91846610-3	chr16	91846493	91846693	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	85037.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	11.71	2.26	10.84	9.25	11.45	10.03	5.31	16.82	9.44	13.05	15.58	11.28
Merged-chr19-30010780-1	chr19	30010680	30010880	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR34D_MM|LTR|ERVK	6990.0	NM_025741	66745.0	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	5.25	2.26	4.56	2.41	5.73	6.59	7.64	6.5	4.72	4.02	1.0	5.95
Merged-chr3-51789569-3	chr3	51789475	51789675	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	128396.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	9.69	8.55	15.4	21.32	12.68	11.6	8.64	16.15	11.01	13.05	14.07	8.46
Merged-chrUn_JH584304-67155-1	chrUn_JH584304	67055	67255	+	789.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-7466.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.39	17.57	10.05	20.68
Merged-chr5-45923158-1	chr5	45923058	45923258	+	789.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9251.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	1.62	5.79	3.99	2.82	3.27	2.2	7.64	2.61	11.41	8.03	16.08	7.83
Merged-chr1-157014204-3	chr1	157014111	157014311	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74585.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	4.04	8.3	9.7	6.03	18.41	26.03	13.62	19.4	11.41	10.04	9.04	3.13
Merged-chr17-47141061-2	chr17	47140847	47141047	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001097623)	promoter-TSS (NM_001097623)	5.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	5.25	2.26	2.85	3.62	4.91	1.88	1.0	2.92	9.05	1.0	1.0	2.82
Merged-chr10-8122114-2	chr10	8122013	8122213	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165990.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	8.08	5.79	11.98	2.01	15.14	14.74	19.93	19.46	9.24	5.52	10.05	3.76
Merged-chr5-100628190-2	chr5	100628090	100628290	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46066.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	6.06	4.78	9.7	4.83	5.32	10.66	8.64	5.72	14.16	23.6	17.59	8.14
Merged-chr10-94537289-3	chr10	94537179	94537379	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	B2_Mm1t|SINE|B2	-13593.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	16.96	6.29	6.85	14.08	15.96	5.64	8.64	14.13	8.26	7.03	11.05	7.21
Merged-chr11-70396454-1	chr11	70396354	70396554	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029231, intron 12 of 16)	intron (NM_029231, intron 12 of 16)	13577.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	4.85	1.76	4.56	4.02	7.77	17.25	3.99	6.56	8.06	7.03	14.07	6.89
Merged-chr15-82380357-1	chr15	82380257	82380457	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163472)	promoter-TSS (NM_001163472)	-97.0	NM_001163472	56448.0	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	5.65	2.77	5.7	1.61	3.68	7.84	3.99	6.87	1.97	6.03	3.01	5.01
Merged-chr6-87122369-5	chr6	87122317	87122517	+	789.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17671.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	2.42	5.53	0.0	4.83	4.09	3.14	6.31	8.02	5.31	10.54	8.54	8.77
Merged-chr13-43547049-3	chr13	43546942	43547142	+	789.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 6 of 8)	intron (NM_001081059, intron 6 of 8)	13149.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.25	8.05	10.84	10.86	16.77	19.76	4.65	5.92	7.47	19.08	7.03	12.53
Merged-chr11-22631883-6	chr11	22631790	22631990	+	789.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119607.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	1.62	3.02	3.99	8.85	5.32	3.45	5.65	4.01	4.72	5.02	4.52	2.51
Merged-chr3-87033605-3	chr3	87033497	87033697	+	789.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34257.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	7.27	8.55	2.28	6.84	9.82	12.23	2.66	8.44	10.82	13.56	7.54	12.84
Merged-chr11-115601302-3	chr11	115601190	115601390	+	789.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	2626.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	14.13	7.04	9.7	9.65	19.23	32.3	18.93	24.53	11.01	11.05	11.56	10.02
Merged-chr13-108013279-2	chr13	108013181	108013381	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31193.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	3.23	3.27	10.27	2.41	15.96	14.42	11.63	12.53	9.24	7.53	13.06	3.45
Merged-chr12-111944091-2	chr12	111943996	111944196	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029464, intron 1 of 2)	intron (NR_029464, intron 1 of 2)	386.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	3.23	2.26	2.85	1.61	4.91	6.59	8.3	5.07	15.34	13.56	11.05	9.4
Merged-chr18-84720211-2	chr18	84720102	84720302	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	58.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	6.86	6.54	10.27	4.02	13.09	11.92	7.31	14.44	8.85	8.54	22.11	7.83
Merged-chr11-90242040-2	chr11	90241959	90242159	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-7417.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.46	1.76	5.7	1.61	12.27	14.74	6.64	15.5	9.24	4.52	8.54	4.39
Merged-chr11-51918089-3	chr11	51918015	51918215	+	789.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49516.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.46	8.05	5.7	3.62	9.0	13.17	7.31	11.05	10.23	12.05	14.57	9.08
Merged-chr17-6215957-3	chr17	6215878	6216078	+	789.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001103181, intron 8 of 13)	intron (NM_001103181, intron 8 of 13)	-40882.0	NM_001357884	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	12.92	10.31	23.96	14.08	22.5	15.37	10.96	43.07	9.83	7.03	4.52	7.21
Merged-chr10-41288980-3	chr10	41288877	41289077	+	789.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	14264.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	14.13	7.8	7.99	12.87	11.86	6.27	4.98	9.76	9.05	11.55	18.59	19.11
Merged-chr8-106151231-2	chr8	106151147	106151347	+	789.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	893.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.81	5.03	13.69	0.8	6.95	7.21	5.31	4.32	13.77	6.53	8.54	9.08
Merged-chr2-179948963-2	chr2	179948862	179949062	+	789.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	27684.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	7.67	2.77	18.25	4.02	15.55	13.17	4.32	9.14	8.26	7.53	15.07	7.21
Merged-chr12-11277395-2	chr12	11277303	11277503	+	789.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361252, intron 4 of 9)	intron (NM_001361252, intron 4 of 9)	11517.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	9.69	3.77	3.99	9.65	3.27	9.09	5.65	11.94	4.52	10.04	6.03	2.51
Merged-chr3-60474407-1	chr3	60474307	60474507	+	789.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1577.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.02	3.52	1.14	3.62	2.86	1.25	7.64	3.31	11.8	3.51	10.05	8.14
Merged-chr1-173412666-1	chr1	173412566	173412766	+	789.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7938.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.81	2.01	2.28	2.41	1.23	4.7	1.33	1.32	23.41	10.54	24.12	7.21
Merged-chr1-180904829-3	chr1	180904746	180904946	+	789.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133705, intron 2 of 6)	intron (NM_133705, intron 2 of 6)	572.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	11.31	8.05	7.42	12.47	11.45	8.47	9.97	12.62	7.87	5.52	12.06	8.77
Merged-chr15-34336419-3	chr15	34336321	34336521	+	789.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	21451.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	20.59	4.78	6.28	16.89	18.41	40.45	23.92	35.55	5.51	9.04	13.06	7.83
Merged-chr17-32810831-3	chr17	32810729	32810929	+	789.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-898.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	2.42	10.82	8.56	4.02	1.64	21.95	12.62	4.88	23.21	20.08	26.63	14.72
Merged-chr10-80693750-4	chr10	80693668	80693868	+	789.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8052.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	4.04	7.29	1.71	1.21	9.82	3.76	0.66	3.22	3.34	6.53	2.51	4.7
Merged-chr18-50113060-2	chr18	50112951	50113151	+	789.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15150.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	3.23	13.08	7.42	8.85	6.14	12.86	10.3	9.87	18.29	10.54	11.05	5.33
Merged-chr2-91204872-3	chr2	91204760	91204960	+	789.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	1948.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	12.52	5.28	9.13	11.26	7.77	13.17	8.97	11.75	12.39	11.05	20.1	6.27
Merged-chr18-84799482-2	chr18	84799389	84799589	+	789.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51849.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	7.67	5.03	7.99	5.23	7.77	10.03	6.31	7.35	11.41	11.05	18.09	8.14
Merged-chrX-121401216-2	chrX	121401109	121401309	+	789.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	996176.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	4.85	9.56	9.13	9.65	11.86	18.19	11.96	20.5	0.0	0.0	0.0	0.0
Merged-chr12-110843388-3	chr12	110843295	110843495	+	789.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152102, exon 2 of 2)	non-coding (NR_152102, exon 2 of 2)	2366.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	14.13	9.81	18.83	10.86	8.59	12.54	8.3	16.82	10.42	7.53	9.04	11.28
Merged-chr11-46373258-3	chr11	46373157	46373357	+	789.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281966, intron 1 of 16)	Lx8b|LINE|L1	16258.0	NM_001281968	16428.0	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	5.65	8.3	11.98	17.29	16.36	10.03	8.3	16.93	18.1	11.05	16.08	6.89
Merged-chr11-17007477-5	chr11	17007453	17007653	+	789.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	PB1D7|SINE|Alu	1165.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	5.65	5.53	3.42	6.03	9.0	3.45	6.64	3.14	13.18	8.54	1.0	6.89
Merged-chr16-20509163-3	chr16	20509119	20509319	+	789.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172265, exon 16 of 16)	3' UTR (NM_172265, exon 16 of 16)	-7767.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	4.44	5.28	11.41	12.87	4.91	9.72	6.98	10.29	8.46	6.53	13.57	10.02
Merged-chr6-108277153-2	chr6	108277053	108277253	+	789.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	64057.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	8.48	8.55	12.55	14.88	13.5	3.76	8.97	16.57	5.51	2.51	3.01	5.64
Merged-chr10-37979188-2	chr10	37979088	37979288	+	789.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-196586.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	11.71	5.79	3.99	8.04	4.91	13.17	9.63	12.22	5.7	9.54	18.09	7.21
Merged-chr3-37140719-2	chr3	37140603	37140803	+	789.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-14749.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	8.88	12.07	7.99	16.49	10.64	5.96	5.98	14.22	12.78	8.54	14.57	7.83
Merged-chr5-105393586-3	chr5	105393512	105393712	+	789.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-22163.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	9.29	15.09	8.56	7.64	18.0	12.23	5.98	4.96	20.46	13.56	16.58	4.07
Merged-chr9-90113078-3	chr9	90112996	90113196	+	789.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 1 of 12)	B4A|SINE|B4	1724.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.81	11.07	12.55	2.01	5.73	6.59	6.64	10.07	9.64	10.04	13.06	7.83
Merged-chr4-88840230-3	chr4	88840127	88840327	+	789.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1589.0	NM_010504	15967.0	Mm.377088	NM_010504	ENSMUSG00000070904	Ifna4	Ifa4	interferon alpha 4	protein-coding	8.88	11.57	11.41	14.48	9.82	16.93	4.32	6.25	21.64	15.06	4.52	16.6
Merged-chr2-29194761-3	chr2	29194648	29194848	+	789.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001305805)	TTS (NM_001305805)	53351.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	8.88	10.56	0.57	2.82	7.36	12.54	5.65	9.98	11.21	6.53	7.54	5.64
Merged-chr4-41614334-3	chr4	41614232	41614432	+	789.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175138, exon 11 of 20)	exon (NM_175138, exon 11 of 20)	25970.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	9.29	8.55	10.27	9.25	11.05	17.56	5.98	18.28	17.51	14.06	16.58	15.35
Merged-chr6-146746754-2	chr6	146746658	146746858	+	789.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	21828.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	1.62	2.01	5.7	5.23	5.32	5.64	6.64	8.27	11.21	11.05	21.1	7.21
Merged-chr11-75510256-4	chr11	75510116	75510316	+	789.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_138659)	TTS (NM_138659)	122.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	11.31	11.32	3.42	2.82	9.82	8.47	3.99	4.82	5.51	14.06	9.55	7.52
Merged-chr16-87746904-3	chr16	87746802	87747002	+	789.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	47948.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	10.5	5.03	5.7	15.69	13.09	18.81	4.65	11.64	18.88	11.55	23.11	12.84
Merged-chr8-36185370-2	chr8	36185289	36185489	+	789.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29379.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	6.46	9.81	16.54	12.87	13.09	8.15	15.61	17.19	3.15	2.01	5.02	1.25
Merged-chr3-41402037-3	chr3	41401944	41402144	+	789.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91155.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	14.13	7.55	8.56	20.51	18.41	10.35	14.28	18.53	5.51	12.05	15.07	10.02
Merged-chr5-45917053-3	chr5	45916948	45917148	+	789.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	15361.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	7.67	9.56	16.54	14.08	11.86	6.9	5.98	16.51	14.36	16.07	13.57	17.54
Merged-chr3-149103636-2	chr3	149103538	149103738	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-149003.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	7.67	3.02	9.13	8.04	22.91	19.44	19.93	24.34	2.16	2.51	15.07	9.4
Merged-chr4-126883745-3	chr4	126883636	126883836	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114399, intron 23 of 29)	intron (NM_001114399, intron 23 of 29)	84187.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.81	3.52	10.27	10.46	11.05	6.9	9.63	13.09	14.95	11.05	18.59	13.78
Merged-chr2-109278206-1	chr2	109278106	109278306	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	84.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	1.21	3.77	3.42	4.83	3.27	10.66	7.97	6.31	4.13	9.04	5.53	4.07
Merged-chr10-7045860-3	chr10	7045764	7045964	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-22679.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	15.75	9.81	9.13	8.04	22.5	20.07	14.62	4.21	11.41	14.56	14.07	0.0
Merged-chr5-36573386-1	chr5	36573286	36573486	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	9011.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.23	2.77	6.85	11.26	3.68	2.2	5.31	7.79	5.31	2.01	6.53	1.88
Merged-chr4-105149726-3	chr4	105149632	105149832	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-7615.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.46	4.28	6.28	11.66	1.64	1.57	10.96	13.07	8.85	5.02	14.07	10.34
Merged-chr8-124845336-1	chr8	124845236	124845436	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	17693.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	4.04	3.02	3.42	2.82	5.32	6.9	3.32	9.76	1.97	2.51	0.5	2.51
Merged-chr8-60859766-1	chr8	60859666	60859866	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30627.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	1.62	5.79	2.28	9.25	3.27	5.96	4.98	7.09	0.2	12.05	1.51	0.0
Merged-chr5-16507257-1	chr5	16507157	16507357	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46238.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.4	1.01	2.85	2.01	11.05	0.94	5.65	6.34	3.74	4.02	4.02	8.77
Merged-chr10-39455579-1	chr10	39455479	39455679	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	85780.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	10.9	0.0	4.56	6.44	6.55	1.25	3.99	6.98	6.88	3.01	12.06	5.64
Merged-chr11-89084823-1	chr11	89084723	89084923	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033266, intron 2 of 3)	MER44B|DNA|TcMar-Tigger	10982.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	4.04	1.01	2.28	2.41	8.18	11.6	1.99	7.85	4.13	5.52	4.52	3.45
Merged-chr12-102524392-2	chr12	102524295	102524495	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30546.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	6.46	7.04	7.99	4.83	13.91	17.56	18.6	16.99	7.28	8.03	10.55	9.71
Merged-chr16-12574509-1	chr16	12574409	12574609	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-236881.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	1.14	3.22	2.45	8.78	0.66	6.34	0.79	11.05	4.52	3.13
Merged-chr5-124075725-1	chr5	124075625	124075825	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20073.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	4.44	6.79	5.7	1.61	10.64	10.03	4.98	5.94	2.56	1.0	1.51	3.13
Merged-chr3-86959777-1	chr3	86959677	86959877	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26809.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0.0	2.01	0.0	0.0	3.68	8.15	5.65	5.83	0.39	0.5	0.0	0.63
Merged-chr6-113837943-3	chr6	113837845	113838045	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 2 of 19)	intron (NM_001036684, intron 2 of 19)	53594.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	12.11	4.28	21.11	18.1	7.36	6.27	8.3	16.96	8.46	4.52	13.57	10.96
Merged-chr10-18931650-1	chr10	18931550	18931750	+	789.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80313.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.04	1.51	0.0	3.22	10.64	3.45	5.65	1.93	8.65	14.06	16.08	12.84
Merged-chr15-30468456-3	chr15	30468352	30468552	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	295859.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	12.11	6.54	6.85	6.84	9.41	7.53	5.31	9.11	12.59	16.07	16.08	7.21
Merged-chr3-79160181-1	chr3	79160081	79160281	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14306.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.42	2.01	0.0	4.83	2.86	12.54	5.98	2.27	1.77	3.51	3.01	0.0
Merged-chr17-56858364-1	chr17	56858264	56858464	+	789.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039114, intron 6 of 14)	intron (NM_001039114, intron 6 of 14)	16083.0	NM_001039114	328845.0	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	3.63	5.03	5.7	2.82	1.64	5.33	1.99	4.43	3.54	12.05	5.02	8.46
Merged-chr11-20149786-2	chr11	20149687	20149887	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-36836.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	6.06	3.52	9.13	4.02	11.45	11.6	5.98	1.85	13.96	6.03	5.53	11.9
Merged-chr19-43648551-2	chr19	43648442	43648642	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6535.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	7.27	8.8	4.56	6.84	17.18	31.98	18.6	22.04	1.77	2.01	14.07	3.13
Merged-chr13-55231959-1	chr13	55231859	55232059	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	22177.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	1.62	2.01	3.42	2.41	6.55	2.2	10.63	7.15	3.74	5.02	2.01	1.88
Merged-chr16-55806544-1	chr16	55806444	55806644	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15594.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.69	11.82	0.0	0.0	1.23	12.23	0.66	0.45	3.54	7.03	1.0	0.63
Merged-chr3-79233928-2	chr3	79233827	79234027	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21008.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	13.33	17.61	41.64	16.09	4.91	1.25	1.99	6.62	8.85	9.54	8.04	8.46
Merged-chr4-130805951-2	chr4	130805864	130806064	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	13427.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.23	1.76	4.56	8.85	11.05	2.82	16.94	11.1	7.47	6.03	9.55	5.01
Merged-chr13-21234180-1	chr13	21234080	21234280	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54249.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	6.86	4.53	6.85	11.26	5.73	2.82	4.65	8.13	1.18	0.0	2.51	0.94
Merged-chr11-59578400-1	chr11	59578300	59578500	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6662.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	4.85	3.02	0.0	2.82	11.05	3.45	3.32	4.96	4.72	7.03	5.02	4.07
Merged-chr3-19430356-1	chr3	19430256	19430456	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78239.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.81	0.0	2.28	3.22	6.14	0.63	6.98	8.21	2.56	1.0	0.0	5.01
Merged-chr5-105559943-1	chr5	105559843	105560043	+	789.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	40472.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.62	9.31	2.85	0.8	2.86	1.25	3.32	0.84	8.65	7.03	9.55	5.33
Merged-chr8-108780718-1	chr8	108780618	108780818	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66074.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.42	5.79	1.14	6.84	1.23	9.72	2.99	5.8	2.16	2.01	2.01	1.25
Merged-chr2-90841365-1	chr2	90841265	90841465	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-5790.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	10.5	8.3	6.85	6.84	7.36	6.59	3.32	0.56	4.13	7.53	2.01	5.95
Merged-chr8-106411726-1	chr8	106411626	106411826	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3613.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	7.27	5.28	3.42	8.45	2.45	3.76	4.65	11.36	9.64	5.52	4.52	5.64
Merged-chr7-24971452-3	chr7	24971364	24971564	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010261, intron 3 of 4)	intron (NM_010261, intron 3 of 4)	1264.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	10.5	8.05	12.55	10.46	7.77	13.17	6.64	8.36	11.41	11.55	11.05	9.4
Merged-chr11-25358269-1	chr11	25358169	25358369	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045853, intron 5 of 7)	intron (NR_045853, intron 5 of 7)	32162.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	0.0	0.5	0.0	4.83	5.73	3.76	5.98	7.49	0.2	0.0	2.01	0.63
Merged-chr8-94330961-3	chr8	94330862	94331062	+	788.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 2 of 24)	intron (NM_019415, intron 2 of 24)	1754.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	10.09	11.32	10.27	12.07	9.82	8.47	5.98	11.64	15.14	9.04	6.53	11.9
Merged-chr6-31108094-3	chr6	31107985	31108185	+	788.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-44992.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	8.88	8.05	11.98	3.62	8.18	15.05	8.3	6.98	11.21	13.05	9.55	7.21
Merged-chr2-73462947-3	chr2	73462863	73463063	+	788.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9074.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	10.09	5.28	9.7	10.46	13.91	6.59	8.64	17.97	12.19	7.53	12.06	20.05
Merged-chr15-97831620-3	chr15	97831522	97831722	+	788.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001204276, exon 1 of 26)	5' UTR (NM_001204276, exon 1 of 26)	145.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	15.34	7.04	11.41	9.25	12.27	7.21	10.96	7.23	8.65	7.53	6.03	12.53
Merged-chr15-79442128-2	chr15	79442039	79442239	+	788.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013767)	promoter-TSS (NM_013767)	4.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	7.27	5.53	6.85	2.41	10.64	10.66	2.33	8.1	9.64	7.53	14.07	9.4
Merged-chr4-86657362-2	chr4	86657251	86657451	+	788.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007408, exon 8 of 8)	exon (NM_007408, exon 8 of 8)	12708.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.21	3.02	3.99	5.23	15.55	14.74	22.26	29.07	9.24	4.52	9.55	9.08
Merged-chr8-67879499-3	chr8	67879395	67879595	+	788.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	31451.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	9.69	7.04	25.1	23.73	16.36	9.72	17.94	21.25	8.06	9.54	16.08	15.35
Merged-chr7-102241863-2	chr7	102241773	102241973	+	788.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	8245.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	2.42	3.27	8.56	3.22	15.55	5.02	8.64	8.97	9.24	7.03	10.05	4.7
Merged-chr15-25831529-2	chr15	25831408	25831608	+	788.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11790.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	7.27	3.27	3.42	6.44	14.73	6.9	14.95	13.07	8.26	14.06	10.55	3.13
Merged-chr4-123941095-3	chr4	123941001	123941201	+	788.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23668.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	10.09	10.56	9.13	2.41	4.09	11.6	5.31	3.56	14.55	12.55	14.07	11.59
Merged-chr7-27606353-1	chr7	27606253	27606453	+	788.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331109)	promoter-TSS (NM_001331109)	556.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.4	1.51	2.28	6.03	4.09	4.08	3.99	1.12	14.16	15.06	10.05	8.46
Merged-chr14-103843751-2	chr14	103843623	103843823	+	788.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-22.0	NM_001276296	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	2.83	7.8	5.13	12.07	4.91	9.72	6.64	10.15	4.92	5.52	15.07	5.95
Merged-chr8-127815452-3	chr8	127815357	127815557	+	788.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	462768.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	12.52	6.54	6.28	11.66	6.95	8.78	6.98	8.8	12.98	11.55	15.58	12.22
Merged-chr10-79840889-1	chr10	79840789	79840989	+	788.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	ZP3AR|Satellite|Satellite	-13543.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	3.63	4.28	5.13	4.42	9.0	5.33	6.98	7.01	5.11	5.52	4.52	5.64
Merged-chrX-106044144-4	chrX	106044024	106044224	+	788.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	L1ME1|LINE|L1	16900.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	6.86	4.28	10.27	9.25	6.55	4.08	7.31	7.74	4.52	8.03	16.08	4.7
Merged-chr5-76178888-1	chr5	76178788	76178988	+	788.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4992.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	4.04	3.02	0.0	3.22	4.5	6.27	3.65	3.22	6.29	3.51	3.01	0.63
Merged-chr1-43091496-2	chr1	43091387	43091587	+	788.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	999.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	11.71	6.79	6.28	8.45	4.09	9.41	16.28	10.65	7.28	8.03	3.52	8.46
Merged-chr3-109029734-2	chr3	109029627	109029827	+	788.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2120.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.85	7.55	1.14	3.62	9.0	7.84	5.65	4.6	18.1	14.56	7.03	2.51
Merged-chr1-128729744-3	chr1	128729646	128729846	+	788.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-137447.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.46	3.02	14.83	9.65	7.77	7.21	5.65	15.73	16.52	11.55	36.18	13.47
Merged-chr8-83622444-3	chr8	83622326	83622526	+	788.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13878.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	10.5	22.13	9.7	18.9	11.86	16.62	14.62	8.44	8.65	4.52	13.57	7.21
Merged-chr5-136988589-3	chr5	136988486	136988686	+	788.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-627.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	16.56	10.82	10.84	9.25	10.64	12.23	5.31	14.69	12.98	12.05	13.57	12.84
Merged-chr9-116139065-2	chr9	116138956	116139156	+	788.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36307.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	8.48	8.05	7.99	3.62	11.05	10.98	5.31	11.21	8.06	21.09	14.07	6.89
Merged-chr6-46204736-1	chr6	46204636	46204836	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 9 of 23)	ORR1B2|LTR|ERVL-MaLR	-1039660.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.23	6.04	3.99	10.86	8.59	7.84	10.3	8.94	0.0	0.0	0.0	0.31
Merged-chr16-91936559-2	chr16	91936449	91936649	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4919.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	10.9	4.02	1.14	7.64	8.59	8.15	5.65	7.15	14.55	13.56	7.03	9.71
Merged-chr15-41154936-1	chr15	41154836	41155036	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18765.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.81	1.76	1.14	10.05	7.77	7.84	11.29	15.5	1.18	3.01	3.01	1.57
Merged-chr6-15746101-1	chr6	15746001	15746201	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	25440.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.65	4.78	2.28	13.27	7.36	4.39	8.97	16.26	4.72	2.51	11.05	1.57
Merged-chr4-145111834-1	chr4	145111734	145111934	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 35 of 69)	intron (NM_001276465, intron 35 of 69)	78832.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	9.29	3.52	6.28	3.22	2.45	8.47	10.96	7.6	2.36	0.0	5.02	0.31
Merged-chr12-104067534-3	chr12	104067479	104067679	+	788.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10380.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	16.96	15.85	12.55	8.85	5.73	2.51	3.32	4.43	17.51	21.59	21.61	9.4
Merged-chr16-94574813-3	chr16	94574709	94574909	+	788.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3902.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	11.31	14.59	12.55	6.84	16.77	22.26	14.28	8.69	13.18	30.13	11.05	17.54
Merged-chr11-99066169-2	chr11	99066082	99066282	+	788.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172564, exon 13 of 13)	3' UTR (NM_172564, exon 13 of 13)	23124.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	15.75	12.32	10.84	3.22	3.27	10.35	3.32	6.11	5.31	4.02	5.53	2.19
Merged-chr2-73536579-2	chr2	73536477	73536677	+	788.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7090.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	12.92	1.76	7.99	11.26	5.73	7.53	11.96	11.27	4.92	2.01	8.04	2.82
Merged-chr4-84675838-2	chr4	84675739	84675939	+	788.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172870)	promoter-TSS (NM_172870)	-753.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	10.9	11.32	12.55	6.03	6.95	7.84	9.63	8.13	5.9	5.52	6.03	5.64
Merged-chr5-113736533-2	chr5	113736454	113736654	+	788.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001010825, intron 1 of 2)	intron (NM_001010825, intron 1 of 2)	772.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	1.62	4.53	2.85	1.21	9.82	8.15	2.99	5.72	13.18	10.04	6.03	7.52
Merged-chr16-24860543-3	chr16	24860428	24860628	+	788.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138673.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.63	5.79	6.28	8.85	10.64	13.48	8.97	14.36	12.0	13.05	17.59	15.04
Merged-chr4-132898454-1	chr4	132898354	132898554	+	788.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163792)	TTS (NM_001163792)	-13996.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.0	0.5	0.0	0.0	0.41	0.0	0.0	0.0	12.78	20.59	15.58	7.83
Merged-chr13-75708796-1	chr13	75708696	75708896	+	788.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1312.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	5.25	1.01	2.85	2.82	7.36	5.64	5.98	10.6	6.49	14.06	6.53	16.29
Merged-chr2-25422099-2	chr2	25422000	25422200	+	788.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1142.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	3.63	4.53	5.7	6.03	6.55	3.45	2.33	4.74	15.93	11.55	12.06	10.02
Merged-chr7-80688200-3	chr7	80688085	80688285	+	788.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 1 of 14)	CpG	692.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	3.23	14.09	6.85	11.26	8.59	8.47	6.31	4.12	11.8	9.04	10.05	10.96
Merged-chr17-26942643-3	chr17	26942557	26942757	+	788.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281491, intron 1 of 18)	intron (NM_001281491, intron 1 of 18)	1205.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	8.88	7.8	3.42	5.23	9.82	10.66	3.32	8.55	11.01	14.56	11.56	10.02
Merged-chr6-99649510-3	chr6	99649417	99649617	+	788.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 2 of 6)	intron (NM_025829, intron 2 of 6)	17254.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	17.36	8.05	13.12	18.1	8.59	13.48	9.3	24.73	13.37	9.04	15.07	8.14
Merged-chr8-106581673-3	chr8	106581559	106581759	+	788.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-5484.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	10.5	8.05	10.84	18.9	8.18	10.98	11.29	15.14	14.95	8.54	12.06	14.1
Merged-chr2-145675491-1	chr2	145675391	145675591	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25704.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	2.83	5.79	0.57	6.44	4.09	1.88	2.99	5.94	5.11	8.03	4.52	6.58
Merged-chr15-98476526-1	chr15	98476426	98476626	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6157.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	2.02	2.52	3.42	5.23	8.59	1.88	1.0	6.81	5.11	4.02	5.02	7.83
Merged-chr5-34236240-1	chr5	34236140	34236340	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	-48530.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	1.62	3.27	5.13	2.01	6.95	3.45	6.98	7.88	5.11	8.03	10.55	2.82
Merged-chr19-14650935-1	chr19	14650835	14651035	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-52752.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.23	0.25	0.0	6.44	7.36	3.76	6.64	7.12	1.38	3.01	17.59	2.82
Merged-chr10-52256087-1	chr10	52255987	52256187	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	22468.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	4.44	1.76	3.99	3.62	8.18	4.7	3.99	7.09	5.51	7.03	7.03	3.13
Merged-chr3-137946687-1	chr3	137946587	137946787	+	788.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28132.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	14.94	8.55	19.4	12.87	25.77	19.76	11.96	13.23	21.44	9.04	22.11	13.16
Merged-chr5-23225187-1	chr5	23225087	23225287	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081231, intron 3 of 3)	intron (NM_001081231, intron 3 of 3)	209166.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	2.02	4.02	0.0	0.4	6.95	3.14	7.64	4.51	3.93	4.52	4.02	2.51
Merged-chr2-18890556-1	chr2	18890456	18890656	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-88738.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	2.42	3.77	1.14	2.01	15.14	5.64	2.66	6.45	2.95	2.51	3.01	4.07
Merged-chr15-39968931-1	chr15	39968831	39969031	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6282.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	1.51	0.0	2.41	6.55	3.14	9.97	8.33	0.59	5.02	0.0	0.63
Merged-chr17-29975904-2	chr17	29975815	29976015	+	788.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29124.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	14.54	6.54	6.85	6.03	9.82	11.92	5.98	8.47	16.33	10.54	18.59	6.58
Merged-chr3-27298422-3	chr3	27298304	27298504	+	788.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18673.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	10.9	9.31	12.55	5.63	10.64	6.59	3.65	9.62	27.34	20.59	50.25	13.78
Merged-chr15-79544752-3	chr15	79544672	79544872	+	788.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040187, intron 1 of 12)	PB1D9|SINE|Alu	1787.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	4.85	9.56	17.11	8.45	3.27	13.48	8.3	4.79	15.54	7.53	7.54	9.4
Merged-chr11-21265629-3	chr11	21265530	21265730	+	788.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 3 of 22)	intron (NM_001290628, intron 3 of 22)	26598.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	14.54	9.56	18.25	13.27	7.77	10.98	5.98	10.51	16.52	13.05	21.1	13.16
Merged-chr13-104789883-3	chr13	104789786	104789986	+	788.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	27067.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	20.19	10.56	13.69	9.25	15.96	7.53	3.65	9.84	24.78	8.03	15.07	10.02
Merged-chr5-147574687-2	chr5	147574563	147574763	+	788.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	144507.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.44	1.26	4.56	3.22	6.55	9.41	5.65	9.81	18.29	13.56	19.09	7.83
Merged-chr12-55437306-2	chr12	55437209	55437409	+	788.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38484.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.23	6.79	7.99	0.8	6.14	15.37	12.62	3.9	10.62	13.05	12.56	9.71
Merged-chr10-93967217-1	chr10	93967117	93967317	+	788.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	-3354.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	0.81	1.01	2.28	0.4	1.64	0.63	0.33	1.88	12.0	6.03	12.56	7.83
Merged-chr3-133075806-3	chr3	133075695	133075895	+	788.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356309, intron 3 of 11)	B4A|SINE|B4	16030.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	6.46	8.8	11.98	20.51	14.73	11.29	9.3	15.59	11.6	3.01	9.55	7.21
Merged-chr3-65380730-2	chr3	65380632	65380832	+	788.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026155, exon 5 of 5)	3' UTR (NM_026155, exon 5 of 5)	11821.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	6.06	1.26	7.42	7.64	13.91	13.48	8.64	18.22	8.46	10.54	13.57	14.1
Merged-chr7-106711635-3	chr7	106711529	106711729	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	4716.0	NM_146598	258591.0	Mm.223117	NM_146598	ENSMUSG00000108948	Olfr695	MOR283-6	olfactory receptor 695	protein-coding	12.11	8.8	8.56	24.13	15.14	11.92	16.28	19.71	14.55	10.04	41.2	6.58
Merged-chr4-136505983-3	chr4	136505883	136506083	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	MTC|LTR|ERVL-MaLR	36222.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	8.88	5.79	4.56	2.01	19.64	25.09	14.62	22.79	12.78	9.54	15.07	12.84
Merged-chr2-5697425-3	chr2	5697332	5697532	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	17330.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	11.31	4.78	7.99	14.48	19.64	13.17	14.28	19.99	7.87	5.52	15.58	2.51
Merged-chr2-83742969-1	chr2	83742869	83743069	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	18572.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	2.83	4.53	4.56	4.02	5.73	6.59	8.3	7.63	7.08	6.03	10.05	3.45
Merged-chr1-165724922-1	chr1	165724822	165725022	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16828.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.85	2.52	0.0	4.42	6.95	8.15	4.32	7.37	4.92	7.53	11.05	5.64
Merged-chr15-64178664-1	chr15	64178564	64178764	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118216.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.48	3.27	6.28	5.23	4.91	7.53	4.32	8.66	5.7	4.52	1.51	3.45
Merged-chr7-112258770-1	chr7	112258670	112258870	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	32934.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.04	1.01	2.85	5.23	4.5	7.53	6.64	7.6	1.57	0.0	0.5	0.0
Merged-chr9-57974516-1	chr9	57974416	57974616	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-23508.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	14.13	10.06	15.97	3.22	0.0	0.94	0.66	0.28	0.79	0.0	4.52	0.31
Merged-chr6-108702027-1	chr6	108701927	108702127	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-41093.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.44	4.28	10.27	4.42	7.77	5.64	9.3	7.01	2.16	3.01	6.03	3.76
Merged-chr6-97454593-1	chr6	97454493	97454693	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4693.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.25	2.52	8.56	7.24	6.95	5.33	14.28	4.29	4.33	7.53	5.02	4.39
Merged-chr13-30767068-3	chr13	30766984	30767184	+	788.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013674)	TTS (NM_013674)	17851.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	8.48	7.55	6.28	7.64	13.09	11.6	4.32	11.8	13.57	6.03	18.59	17.23
Merged-chr6-81957253-1	chr6	81957153	81957353	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026490)	TTS (NM_026490)	8696.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	2.83	7.29	1.14	2.82	7.77	7.21	11.29	17.83	0.59	3.01	0.0	0.63
Merged-chr8-61612748-1	chr8	61612648	61612848	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-21579.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	11.31	3.77	4.56	3.22	13.91	6.27	11.29	7.37	11.21	5.02	4.52	5.64
Merged-chr15-102074431-1	chr15	102074331	102074531	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145625, intron 1 of 14)	CpG	658.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	5.65	2.01	3.99	6.03	6.95	10.35	7.64	6.59	3.15	6.03	10.55	7.21
Merged-chr7-6937278-1	chr7	6937178	6937378	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	39384.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	4.04	7.04	7.99	6.03	5.73	8.47	9.3	11.58	8.06	0.0	4.02	2.82
Merged-chr7-98193786-2	chr7	98193652	98193852	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081167, exon 2 of 2)	exon (NM_001081167, exon 2 of 2)	5723.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	4.44	14.34	2.28	16.49	4.09	8.47	15.94	7.82	11.01	11.05	10.05	5.01
Merged-chr13-91908392-2	chr13	91908299	91908499	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009027, intron 6 of 14)	intron (NM_009027, intron 6 of 14)	-31514.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	3.23	4.02	5.7	3.22	10.23	12.54	11.63	13.09	9.44	4.52	9.55	7.52
Merged-chr5-114925318-3	chr5	114925206	114925406	+	788.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	2066.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	8.48	8.8	11.98	2.01	8.18	16.93	7.31	8.13	16.72	12.05	7.03	7.83
Merged-chr8-45345203-3	chr8	45345102	45345302	+	788.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153535, intron 8 of 13)	intron (NM_153535, intron 8 of 13)	-12006.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	8.88	9.81	29.09	7.64	14.73	9.72	10.96	17.24	9.05	18.58	14.57	11.28
Merged-chr4-9658714-3	chr4	9658598	9658798	+	788.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	MTD|LTR|ERVL-MaLR	10464.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.65	8.55	5.7	11.26	3.27	7.84	7.64	9.73	16.33	7.53	13.57	13.78
Merged-chr15-85091459-2	chr15	85091417	85091617	+	788.178589	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080470, intron 16 of 24)	intron (NM_080470, intron 16 of 24)	40440.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	2.02	5.28	1.71	4.42	4.09	3.76	5.98	4.37	5.7	4.52	6.53	5.33
Merged-chr15-103510461-3	chr15	103510363	103510563	+	788.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3337.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	14.54	17.86	9.13	12.87	11.86	9.09	9.63	10.79	20.65	6.53	8.54	6.58
Merged-chr5-23114400-3	chr5	23114291	23114491	+	788.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	intron (NM_029990, intron 2 of 2)	319962.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.65	8.8	18.25	8.85	23.73	32.93	26.24	40.29	15.54	11.05	25.12	7.52
Merged-chr16-87634279-3	chr16	87634154	87634354	+	788.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64700.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	9.29	8.05	6.85	5.63	10.23	13.48	12.62	9.62	8.65	14.56	14.57	9.4
Merged-chr16-4212398-3	chr16	4212294	4212494	+	788.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	1010.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	6.46	6.29	17.68	12.47	9.0	10.66	4.98	10.51	16.13	8.03	15.07	13.16
Merged-chr13-101914896-3	chr13	101914809	101915009	+	788.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146692.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.67	4.78	15.4	11.26	9.41	4.08	8.64	12.9	7.87	4.52	11.56	5.64
Merged-chr2-173785098-3	chr2	173784994	173785194	+	788.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019806)	TTS (NM_019806)	47523.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	8.88	10.06	2.28	6.03	20.05	12.23	8.97	20.36	9.83	8.54	6.03	7.52
Merged-chr7-25781575-3	chr7	25781512	25781712	+	788.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	7121.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	14.13	10.82	11.98	6.44	17.18	17.56	7.64	7.37	12.39	11.55	6.03	7.52
Merged-chr14-21742021-3	chr14	21741915	21742115	+	788.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	864.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	14.54	6.04	7.99	6.44	13.09	12.54	7.64	12.31	19.47	16.57	11.05	8.46
Merged-chr6-29507749-3	chr6	29507632	29507832	+	788.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029985, intron 1 of 37)	CpG	220.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	12.11	5.28	3.99	6.03	9.82	9.41	15.28	9.64	5.7	4.02	10.05	8.77
Merged-chr17-64894932-1	chr17	64894832	64895032	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58861.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	2.42	1.51	3.42	4.42	4.5	7.21	9.63	6.48	1.97	2.01	4.02	2.82
Merged-chr2-26476251-1	chr2	26476151	26476351	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008714, intron 14 of 33)	intron (NM_008714, intron 14 of 33)	-6132.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	4.02	3.42	2.41	7.77	9.72	6.31	8.97	2.95	5.02	6.03	2.19
Merged-chr6-129349639-3	chr6	129349536	129349736	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-608.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	7.27	11.07	11.41	14.88	8.18	10.66	5.65	6.53	15.34	20.08	16.08	6.58
Merged-chr6-81618174-3	chr6	81618064	81618264	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277499.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	7.67	7.55	5.13	9.65	26.18	10.66	10.96	10.93	11.01	6.53	17.59	9.4
Merged-chr1-139001164-2	chr1	139001070	139001270	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	23513.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	5.65	4.28	5.7	4.02	9.0	7.84	7.31	11.92	13.77	11.05	10.05	2.51
Merged-chr8-85559401-3	chr8	85559290	85559490	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-4119.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	9.29	6.54	22.25	8.85	10.64	16.31	6.31	16.09	16.13	17.07	15.58	11.9
Merged-chr4-45883434-1	chr4	45883334	45883534	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305421, intron 17 of 18)	intron (NM_001305421, intron 17 of 18)	-6869.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	6.46	3.02	4.56	3.62	11.86	5.33	4.98	12.62	0.59	1.0	3.01	2.51
Merged-chr19-3906466-1	chr19	3906366	3906566	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001136091, intron 1 of 19)	intron (NM_001136091, intron 1 of 19)	517.0	NM_001167784	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.25	11.57	11.41	3.22	11.45	4.7	4.32	2.97	4.72	7.53	3.01	7.83
Merged-chr7-29162995-2	chr7	29162892	29163092	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_182927, exon 5 of 6)	exon (NM_182927, exon 5 of 6)	5655.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	13.33	9.56	6.85	2.41	11.86	10.35	7.64	3.79	2.36	4.02	1.0	2.51
Merged-chr10-121961648-1	chr10	121961548	121961748	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	85667.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	1.21	2.01	1.71	0.0	11.45	4.08	8.64	7.4	0.79	2.01	0.0	0.94
Merged-chr8-111941361-1	chr8	111941261	111941461	+	788.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026693, intron 2 of 3)	intron (NM_026693, intron 2 of 3)	658.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	7.27	5.28	9.7	2.82	6.14	3.14	6.64	10.65	15.34	11.05	8.54	7.83
Merged-chr8-84660782-2	chr8	84660722	84660922	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010499)	TTS (NM_010499)	2030.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	12.52	8.05	6.85	4.83	3.68	6.59	8.64	3.25	13.57	4.02	9.55	4.7
Merged-chr4-132783628-1	chr4	132783528	132783728	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12736.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.23	4.53	12.55	3.22	6.95	3.45	1.33	9.2	7.47	10.54	4.02	4.07
Merged-chr2-48350421-2	chr2	48350334	48350534	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-463675.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.5	2.28	2.41	4.09	8.78	14.95	20.64	9.24	7.03	13.57	12.22
Merged-chr13-91093842-2	chr13	91093752	91093952	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130135.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	9.69	5.28	6.85	10.86	8.18	5.33	10.63	15.81	2.75	2.51	7.54	1.25
Merged-chr2-33295344-2	chr2	33295250	33295450	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	76144.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	3.63	14.34	4.56	16.49	6.95	4.08	2.66	10.79	6.29	3.01	2.51	5.64
Merged-chr18-84699621-1	chr18	84699521	84699721	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-13919.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	6.06	4.02	5.13	2.41	8.18	7.21	0.66	8.05	1.57	6.53	10.55	7.52
Merged-chrX-134577838-1	chrX	134577738	134577938	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 1 of 18)	intron (NM_013482, intron 1 of 18)	5302.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.04	3.02	1.14	2.41	6.14	2.51	7.64	4.99	3.74	2.01	3.52	2.19
Merged-chr12-40036846-2	chr12	40036735	40036935	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039515, intron 1 of 1)	intron (NM_001039515, intron 1 of 1)	541.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	3.63	8.3	2.28	7.24	8.59	4.08	8.97	12.34	10.62	6.03	7.03	6.27
Merged-chr11-82140136-1	chr11	82140036	82140236	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24951.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	2.02	5.28	6.85	4.83	4.5	9.41	3.32	7.21	4.33	4.52	2.01	4.39
Merged-chr17-78882062-2	chr17	78881961	78882161	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011163, intron 1 of 15)	intron (NM_011163, intron 1 of 15)	511.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.81	4.53	3.42	5.23	4.09	2.2	5.98	4.49	10.42	2.51	8.04	9.08
Merged-chr3-107130841-1	chr3	107130741	107130941	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29274.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.81	0.0	1.71	6.44	6.14	1.57	7.64	9.48	4.92	2.01	5.02	3.45
Merged-chr6-115995692-1	chr6	115995592	115995792	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-687.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.86	7.55	3.99	4.02	18.82	5.33	4.98	10.96	6.69	5.02	9.04	4.7
Merged-chr13-98299217-3	chr13	98299110	98299310	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17757.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	11.31	10.56	5.7	10.05	3.68	18.5	4.98	10.43	13.18	12.55	14.57	7.52
Merged-chr3-138442316-1	chr3	138442216	138442416	+	788.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-777.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	3.63	6.79	5.7	6.44	6.14	8.78	8.3	9.2	9.64	16.07	11.56	5.01
Merged-chr9-103272189-1	chr9	103272089	103272289	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027918, intron 7 of 16)	intron (NM_027918, intron 7 of 16)	16108.0	NM_027918	71775.0	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	2.02	3.52	10.84	7.24	6.55	2.2	10.63	9.45	6.1	4.02	8.04	4.7
Merged-chr7-106571075-1	chr7	106570975	106571175	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	73570.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	2.02	0.25	1.14	7.24	4.91	5.33	7.31	6.53	0.39	0.0	0.0	0.0
Merged-chr14-27096504-2	chr14	27096382	27096582	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47511.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	8.08	3.02	3.99	6.03	7.36	6.9	6.31	8.78	9.05	9.54	9.55	4.7
Merged-chr3-21808347-2	chr3	21808235	21808435	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-268317.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.46	2.52	14.83	7.64	24.96	17.56	11.96	22.43	11.41	2.51	6.53	7.21
Merged-chr17-33816943-1	chr17	33816843	33817043	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357162, intron 2 of 5)	intron (NM_001357162, intron 2 of 5)	6420.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	4.85	1.26	1.14	0.8	6.14	10.98	6.31	10.07	3.93	7.03	4.02	2.19
Merged-chr7-100960890-3	chr7	100960791	100960991	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	RSINE1|SINE|B4	3475.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	9.29	7.04	20.54	10.86	11.86	15.99	6.64	18.87	13.96	13.56	24.62	10.02
Merged-chr15-34453243-1	chr15	34453143	34453343	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173421)	promoter-TSS (NM_173421)	-69.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	6.06	5.03	7.99	9.25	13.5	4.7	4.98	8.13	2.56	3.01	2.01	4.07
Merged-chr7-116094318-1	chr7	116094218	116094418	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019772, intron 1 of 4)	intron (NM_019772, intron 1 of 4)	938.0	NM_019772	56372.0	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	2.42	0.0	1.71	2.01	4.09	7.21	3.99	7.96	8.26	4.52	5.02	4.39
Merged-chr8-119436283-3	chr8	119436221	119436421	+	787.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-841.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.27	5.28	9.13	8.04	10.64	12.86	10.63	6.5	11.41	13.56	13.06	9.71
Merged-chr3-105904478-3	chr3	105904429	105904629	+	787.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009631, exon 1 of 2)	5' UTR (NM_009631, exon 1 of 2)	108.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.85	8.05	5.7	8.85	9.0	1.57	2.66	7.77	7.87	6.53	6.53	6.58
Merged-chr6-58756801-3	chr6	58756718	58756918	+	787.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74647.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	4.85	9.81	14.83	9.25	15.96	8.15	7.31	20.19	12.98	18.08	11.05	11.59
Merged-chr15-103339524-3	chr15	103339327	103339527	+	787.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	659.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	2.02	7.29	3.99	2.01	2.86	1.57	4.98	3.5	3.93	4.02	4.02	8.14
Merged-chr5-25166820-2	chr5	25166739	25166939	+	787.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14641.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0.81	0.5	0.0	0.4	8.18	11.92	8.97	19.57	4.52	9.54	11.56	10.34
Merged-chr7-4964462-3	chr7	4964367	4964567	+	787.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146329)	promoter-TSS (NM_001146329)	-119.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	12.11	15.85	19.4	12.07	32.73	27.91	7.64	20.16	11.01	10.54	11.05	7.52
Merged-chr2-167570088-3	chr2	167569983	167570183	+	787.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31888.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	12.92	3.77	11.41	13.27	14.32	15.68	12.29	12.31	10.23	16.57	4.02	6.89
Merged-chr4-72412442-3	chr4	72412233	72412433	+	787.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211089.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	2.42	3.52	8.56	6.03	5.73	5.02	8.97	7.29	11.01	6.53	8.54	5.64
Merged-chr13-100795698-3	chr13	100795599	100795799	+	787.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9213.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	6.86	1.76	11.41	14.48	4.5	14.11	5.98	6.39	10.62	7.03	5.02	5.95
Merged-chr13-88823750-2	chr13	88823632	88823832	+	787.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037987, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	2260.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	10.9	5.79	14.83	13.27	1.23	1.25	12.62	2.38	10.62	7.53	16.58	6.89
Merged-chr17-71216274-5	chr17	71216145	71216345	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	11591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.44	6.29	9.13	8.04	5.73	0.0	3.65	2.94	8.06	0.5	4.52	2.82
Merged-chr8-120116182-2	chr8	120116088	120116288	+	787.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	2036.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.81	3.77	3.99	1.61	4.09	10.66	19.93	12.84	8.85	7.03	7.03	5.33
Merged-chr4-114983390-3	chr4	114983283	114983483	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	3845.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	8.08	7.8	5.7	2.82	11.05	11.6	7.64	6.2	13.18	13.05	5.53	7.83
Merged-chr17-8816787-3	chr17	8816685	8816885	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	A-rich|Low_complexity|Low_complexity	15040.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.86	10.06	15.97	8.85	13.5	4.39	6.64	11.07	20.46	6.53	12.06	5.64
Merged-chr5-21175255-3	chr5	21175135	21175335	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1044.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.65	8.05	6.85	10.05	22.09	23.2	8.3	6.62	21.05	20.08	19.6	10.96
Merged-chr11-103470692-3	chr11	103470592	103470792	+	787.794434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-58028.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	9.69	7.55	7.99	7.24	9.82	25.4	9.3	18.22	21.44	23.6	13.06	13.16
Merged-chr3-94902928-3	chr3	94902843	94903043	+	787.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15985.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	8.88	8.05	9.13	6.44	7.77	14.42	9.3	10.91	10.62	7.03	12.56	6.58
Merged-chr1-151228519-3	chr1	151228442	151228642	+	787.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90508.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	12.52	8.8	14.26	9.65	10.64	8.78	13.95	18.45	4.52	13.56	15.58	3.76
Merged-chr13-25857285-3	chr13	25857190	25857390	+	787.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109026.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	13.73	8.05	6.85	9.25	6.95	10.66	13.62	23.3	12.0	3.01	5.02	6.27
Merged-chr16-55789690-2	chr16	55789586	55789786	+	787.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32452.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.04	5.79	6.85	4.02	15.96	10.35	4.98	8.05	13.18	9.04	7.54	7.83
Merged-chr17-44345558-1	chr17	44345458	44345658	+	787.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	156986.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	6.14	10.35	11.63	8.1	3.74	1.0	1.51	2.82
Merged-chr19-12467790-4	chr19	12467733	12467933	+	787.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	7054.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.85	10.06	5.7	2.01	6.14	10.35	1.33	2.78	2.36	1.0	4.02	4.07
Merged-chr9-32470652-3	chr9	32470593	32470793	+	787.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	70759.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	7.67	8.8	14.26	20.11	4.91	8.47	16.28	30.81	9.64	8.03	12.06	10.02
Merged-chr2-6436236-3	chr2	6436137	6436337	+	787.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	83501.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	12.92	4.78	30.23	10.46	10.64	8.47	7.97	13.26	9.83	6.53	17.59	15.04
Merged-chr13-14618980-3	chr13	14618868	14619068	+	787.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008944, intron 3 of 7)	B3|SINE|B2	5726.0	NM_008944	19166.0	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding	11.71	6.04	7.42	6.84	3.27	7.53	2.99	10.82	13.18	7.53	9.04	7.83
Merged-chr14-47241697-1	chr14	47241597	47241797	+	787.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172598, exon 25 of 25)	exon (NM_172598, exon 25 of 25)	35160.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	6.46	3.77	6.85	8.04	7.77	4.7	8.97	9.67	0.39	1.51	7.03	0.94
Merged-chr4-130861774-3	chr4	130861759	130861959	+	787.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-51475.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	8.48	4.78	2.28	8.85	8.18	12.54	4.32	5.3	10.03	12.05	12.56	6.27
Merged-chr8-71542204-1	chr8	71542104	71542304	+	787.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-726.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	3.23	3.02	6.28	6.44	9.82	15.37	11.96	6.98	7.67	8.03	2.51	6.27
Merged-chr2-11630225-1	chr2	11630125	11630325	+	787.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12567.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	1.62	6.04	2.28	3.22	3.27	3.45	2.99	6.73	9.83	4.52	13.06	9.71
Merged-chr1-47934698-1	chr1	47934598	47934798	+	787.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-467573.0	NR_105768	102466969.0		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.0	0.25	0.0	0.8	2.05	2.82	6.31	4.96	5.11	2.01	9.04	5.64
Merged-chr6-39226055-2	chr6	39225963	39226163	+	787.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19290.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.85	4.53	6.28	4.02	9.41	10.66	20.26	18.93	12.59	8.54	5.53	5.33
Merged-chr13-112058294-2	chr13	112058195	112058395	+	787.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190359.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.63	3.77	2.28	8.04	3.68	7.84	10.3	6.64	9.44	5.02	12.06	3.76
Merged-chr8-108980868-2	chr8	108980781	108980981	+	787.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	44021.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	9.29	3.52	3.42	6.84	5.73	6.27	11.96	8.55	13.96	9.54	10.05	6.27
Merged-chr16-87623969-3	chr16	87623964	87624164	+	787.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	70734.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	8.08	5.28	7.99	2.82	5.73	4.7	8.64	4.29	9.64	10.04	14.07	5.33
Merged-chr10-121316560-3	chr10	121316472	121316672	+	787.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-5176.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.44	6.79	10.27	15.28	13.09	26.34	13.95	14.3	16.72	23.6	11.56	10.34
Merged-chr16-77444210-3	chr16	77444121	77444321	+	787.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114893.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	6.86	10.82	13.69	8.04	6.55	9.72	4.32	11.78	16.52	13.56	23.62	12.53
Merged-chr6-115759733-2	chr6	115759622	115759822	+	787.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144805)	promoter-TSS (NM_144805)	-723.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	7.27	3.27	9.13	0.4	11.45	4.39	4.65	15.03	8.26	7.03	9.55	8.77
Merged-chr7-100123715-3	chr7	100123615	100123815	+	787.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2215.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	9.69	7.8	6.85	18.5	5.73	14.11	4.65	10.46	15.34	17.57	11.56	7.52
Merged-chr9-104261603-3	chr9	104261502	104261702	+	787.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	1328.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.46	11.57	10.27	6.44	11.05	8.15	8.97	14.75	11.01	12.55	16.58	12.84
Merged-chr9-45267273-1	chr9	45267173	45267373	+	787.555542	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106054)	promoter-TSS (NR_106054)	-566.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	4.44	5.53	10.27	1.61	10.64	5.96	4.32	4.91	4.92	7.03	6.03	4.39
Merged-chr14-31414871-3	chr14	31414772	31414972	+	787.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2805.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	12.52	8.05	9.13	3.22	9.82	12.23	5.98	22.29	16.52	25.11	11.56	8.14
Merged-chr6-34922128-3	chr6	34922030	34922230	+	787.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	1182.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	10.09	13.58	9.13	9.65	7.77	10.35	3.32	13.85	16.13	9.54	30.15	10.02
Merged-chr1-167220628-2	chr1	167220506	167220706	+	787.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64521.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	8.08	4.02	9.13	6.84	8.59	7.84	11.63	9.93	8.65	25.61	6.03	9.4
Merged-chr1-43322234-3	chr1	43322121	43322321	+	787.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-123530.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	10.9	7.29	2.85	8.85	11.45	10.66	12.95	7.54	21.83	19.08	14.07	7.52
Merged-chr4-141782973-3	chr4	141782882	141783082	+	787.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172338, exon 4 of 15)	exon (NM_172338, exon 4 of 15)	7662.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	9.69	8.3	9.7	11.26	6.55	13.8	7.31	13.99	15.34	14.56	13.57	10.02
Merged-chrX-36330233-2	chrX	36330126	36330326	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028894, intron 1 of 10)	CpG	1817.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	8.08	4.78	1.71	4.83	5.73	7.53	11.63	12.81	6.88	4.52	17.08	11.9
Merged-chr16-10695172-2	chr16	10695067	10695267	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	90369.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	14.54	8.05	7.99	7.24	4.5	15.05	9.3	9.39	11.8	4.52	6.53	0.0
Merged-chr3-105931297-2	chr3	105931187	105931387	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033780, intron 1 of 5)	intron (NM_001033780, intron 1 of 5)	1377.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	3.23	1.26	7.42	4.42	10.64	8.78	5.31	21.06	12.59	8.54	13.57	4.39
Merged-chr15-9129145-2	chr15	9129058	9129258	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11296.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	8.08	9.31	12.55	3.62	10.64	5.33	4.65	6.79	0.98	1.0	3.52	1.25
Merged-chr4-33497494-3	chr4	33497380	33497580	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 14 of 15)	L1M3|LINE|L1	59399.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	6.06	8.05	12.55	16.89	9.41	14.42	12.95	32.72	10.03	5.02	10.05	14.72
Merged-chr10-39520528-2	chr10	39520420	39520620	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 5 of 13)	intron (NM_001122893, intron 5 of 13)	-92414.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	11.71	4.02	8.56	12.07	2.05	9.72	1.99	11.69	6.88	6.53	16.58	7.83
Merged-chr2-78060272-2	chr2	78060167	78060367	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	9090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.23	6.79	5.7	4.02	9.41	18.5	4.98	5.86	10.82	8.54	10.05	5.95
Merged-chr10-25116240-1	chr10	25116140	25116340	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83930.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.42	1.26	3.99	0.0	6.55	6.27	11.96	11.3	9.83	5.02	6.03	2.51
Merged-chr4-40963124-2	chr4	40963032	40963232	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029814, intron 7 of 7)	MTC|LTR|ERVL-MaLR	-7774.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	6.46	3.27	10.27	6.03	6.95	6.59	8.97	13.85	10.03	0.5	8.54	9.4
Merged-chr11-62921215-2	chr11	62921120	62921320	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29973.0	NM_025496	66338.0	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	10.5	5.79	5.7	2.41	4.5	7.53	2.66	6.22	13.37	2.51	13.06	3.76
Merged-chr2-32404891-3	chr2	32404784	32404984	+	787.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8994.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	16.15	11.82	7.99	8.04	8.18	18.81	9.3	7.93	18.69	25.11	16.08	16.6
Merged-chr5-74471003-2	chr5	74470913	74471113	+	787.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 3 of 8)	L1M2|LINE|L1	60729.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	3.23	3.02	3.42	2.82	6.95	10.66	8.3	8.24	11.21	7.03	18.09	13.47
Merged-chr18-11840760-2	chr18	11840647	11840847	+	787.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_035447)	promoter-TSS (NR_035447)	-309.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	6.46	10.31	15.97	7.64	16.36	4.08	7.97	11.55	3.15	7.53	8.04	11.28
Merged-chr4-75463748-3	chr4	75463640	75463840	+	787.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-185448.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	7.27	5.53	15.97	10.05	14.32	8.47	9.3	19.99	15.14	12.05	18.59	8.46
Merged-chr15-78352372-3	chr15	78352268	78352468	+	787.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3769.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	10.9	5.03	14.83	6.84	6.95	9.72	6.98	8.38	17.31	6.03	13.57	7.21
Merged-chr12-116282135-2	chr12	116282054	116282254	+	787.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	932.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	3.23	6.04	5.7	8.85	6.55	4.39	5.31	8.44	7.67	13.05	4.02	8.77
Merged-chr4-101717744-2	chr4	101717610	101717810	+	787.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122899, exon 1 of 19)	5' UTR (NM_001122899, exon 1 of 19)	303.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.4	4.02	2.28	2.82	13.91	3.45	21.26	12.95	8.46	3.51	12.06	5.33
Merged-chr1-87829779-1	chr1	87829679	87829879	+	787.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	-23508.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	3.23	2.52	0.57	2.01	6.95	6.9	12.95	13.82	4.13	4.02	9.55	2.82
Merged-chr7-44825073-3	chr7	44824962	44825162	+	787.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-8404.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	13.33	6.79	9.7	4.83	9.41	10.98	5.98	8.13	16.33	11.55	16.58	8.14
Merged-chr9-44267090-3	chr9	44266999	44267199	+	787.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	1088.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	14.54	7.8	13.12	2.82	10.23	8.78	10.3	13.01	9.05	6.53	15.07	13.78
Merged-chr10-88741613-3	chr10	88741535	88741735	+	787.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025859, intron 4 of 5)	C-rich|Low_complexity|Low_complexity	10221.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	7.67	8.3	10.84	6.44	13.91	6.9	9.3	19.57	11.21	15.06	21.61	15.66
Merged-chr5-151686871-3	chr5	151686764	151686964	+	787.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35656.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	8.88	5.28	4.56	10.86	9.41	10.66	7.31	10.71	15.54	7.53	8.54	7.52
Merged-chr5-9266073-2	chr5	9265970	9266170	+	787.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359887)	promoter-TSS (NM_001359887)	-48.0	NR_153370	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	4.04	9.56	0.0	6.44	4.91	4.08	5.98	10.26	7.28	19.08	13.57	8.77
Merged-chr8-75213918-2	chr8	75213791	75213991	+	787.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-53.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	4.04	11.82	9.7	2.01	9.0	7.53	10.96	3.7	5.9	8.54	3.01	9.4
Merged-chr4-145239466-2	chr4	145239356	145239556	+	787.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	7414.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	8.08	6.54	3.42	12.87	9.0	10.03	4.32	7.91	10.82	11.55	7.54	5.64
Merged-chr3-55153128-1	chr3	55153028	55153228	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10887.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	2.42	6.29	3.99	10.46	6.95	9.09	3.99	9.45	6.88	4.52	7.54	4.7
Merged-chr4-74297103-3	chr4	74296996	74297196	+	787.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 3 of 20)	intron (NM_001356561, intron 3 of 20)	45217.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	7.27	7.29	11.41	9.65	18.82	5.64	24.25	30.7	17.7	10.04	18.09	9.08
Merged-chr17-67157108-1	chr17	67157008	67157208	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-130873.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	8.08	2.01	4.56	4.02	6.55	5.64	8.3	12.11	6.88	7.03	12.56	7.21
Merged-chr13-100697625-1	chr13	100697525	100697725	+	787.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183115)	TTS (NM_183115)	28144.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	5.65	1.76	16.54	5.63	3.27	3.76	6.64	8.21	10.82	6.53	26.63	9.71
Merged-chr2-13170141-1	chr2	13170041	13170241	+	787.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009105, intron 7 of 8)	intron (NM_009105, intron 7 of 8)	101274.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	2.42	7.55	11.41	8.04	4.5	5.33	2.33	13.37	9.44	12.05	18.09	11.9
Merged-chr13-113669860-1	chr13	113669760	113669960	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6184.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	9.69	4.02	4.56	4.42	8.59	7.84	10.63	10.23	7.87	3.01	3.52	4.39
Merged-chr17-34307434-1	chr17	34307334	34307534	+	787.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1567.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.83	4.02	5.13	1.61	8.18	1.88	1.33	2.19	11.01	12.55	2.51	10.96
Merged-chr17-26601067-1	chr17	26600967	26601167	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	39555.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.46	1.51	2.28	1.61	5.73	3.14	7.64	14.24	4.33	1.0	6.53	3.76
Merged-chr14-48457428-3	chr14	48457303	48457503	+	787.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	11051.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	4.44	2.52	17.11	8.85	13.09	8.78	6.64	17.89	16.13	13.05	20.1	10.34
Merged-chr6-108576902-1	chr6	108576802	108577002	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_104577)	TTS (NR_104577)	46265.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.21	2.77	9.13	6.03	10.23	6.59	9.3	14.78	0.39	0.0	0.0	0.63
Merged-chr4-53134267-3	chr4	53134177	53134377	+	787.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25618.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.63	7.04	18.25	16.09	19.64	21.64	23.58	27.34	8.85	11.55	15.07	4.07
Merged-chr14-16457289-2	chr14	16457185	16457385	+	787.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	92079.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	18.57	8.55	9.7	20.11	11.05	8.15	10.63	15.42	7.28	8.54	10.55	9.71
Merged-chr6-53612282-3	chr6	53612180	53612380	+	787.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 7 of 10)	intron (NM_001327821, intron 7 of 10)	38906.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.04	5.79	13.69	13.67	9.41	8.47	8.97	19.99	14.75	10.04	15.07	5.64
Merged-chr5-77354649-3	chr5	77354524	77354724	+	787.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159518, intron 3 of 5)	intron (NM_001159518, intron 3 of 5)	44140.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	12.92	5.28	10.27	16.49	15.96	13.17	4.98	16.79	12.0	9.54	11.05	7.83
Merged-chrX-12006361-3	chrX	12006257	12006457	+	787.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	74196.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	10.9	9.81	14.83	12.07	9.41	12.86	8.3	10.46	10.62	13.05	16.58	12.53
Merged-chr4-107213500-2	chr4	107213477	107213677	+	787.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081272, intron 2 of 4)	intron (NM_001081272, intron 2 of 4)	4397.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	5.65	8.8	3.42	7.24	9.41	3.14	10.63	6.14	3.15	10.04	5.53	4.07
Merged-chr3-93375419-1	chr3	93375319	93375519	+	787.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-18280.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	5.65	3.27	4.56	2.41	7.36	7.84	8.64	9.76	3.93	2.51	3.52	2.51
Merged-chr1-131345596-1	chr1	131345496	131345696	+	787.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 9 of 22)	intron (NM_001081011, intron 9 of 22)	-66033.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.04	3.52	5.13	0.8	6.55	9.72	8.64	7.15	2.75	5.02	2.01	4.7
Merged-chr9-99488971-2	chr9	99488869	99489069	+	787.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	18548.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	1.62	4.53	7.99	3.62	7.77	15.68	3.99	11.75	12.0	9.54	11.56	6.89
Merged-chr7-96484992-2	chr7	96484896	96485096	+	787.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-143032.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.06	3.52	10.84	11.66	6.95	4.08	14.95	10.32	0.98	0.0	2.51	1.57
Merged-chr6-67056297-3	chr6	67056193	67056393	+	787.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-18886.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	14.13	6.79	13.12	10.86	9.41	19.76	8.3	16.65	10.03	4.52	15.07	5.01
Merged-chr8-94195039-3	chr8	94194927	94195127	+	787.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	15938.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	5.65	5.53	13.69	7.24	17.18	11.92	10.3	7.37	19.47	8.03	20.1	9.4
Merged-chr4-32303888-1	chr4	32303788	32303988	+	787.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113547.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.04	3.52	7.42	6.03	6.95	11.6	12.95	12.25	3.54	2.51	4.02	3.76
Merged-chr15-98517531-3	chr15	98517401	98517601	+	787.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001289437)	TTS (NM_001289437)	2333.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	11.71	7.55	9.13	7.64	6.95	15.99	12.29	8.1	15.14	8.03	6.53	8.77
Merged-chr5-64234345-3	chr5	64234250	64234450	+	787.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	L2a|LINE|L2	3993.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.27	6.29	14.83	12.47	16.36	7.21	19.93	26.44	16.72	9.04	12.06	14.72
Merged-chr10-37146203-3	chr10	37146114	37146314	+	787.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7288.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	1.62	7.55	23.39	7.24	9.82	11.92	8.97	11.94	11.41	3.51	9.55	4.39
Merged-chr13-41000292-4	chr13	41000155	41000355	+	787.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026550)	promoter-TSS (NM_026550)	-755.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	4.85	10.06	3.42	12.47	2.86	8.15	2.99	2.89	5.51	14.06	9.04	7.21
Merged-chr6-15739337-3	chr6	15739243	15739443	+	787.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	18682.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.67	4.02	12.55	17.7	9.82	9.09	6.64	12.56	9.64	14.56	17.08	5.64
Merged-chr6-115367482-3	chr6	115367378	115367578	+	787.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	5129.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.46	8.55	9.13	10.05	10.23	3.76	3.32	12.45	7.67	5.52	14.07	8.14
Merged-chr2-148572947-3	chr2	148572842	148573042	+	787.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99673.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	14.94	7.04	9.13	6.84	8.18	17.87	5.98	10.74	19.47	13.05	23.62	14.41
Merged-chr11-70587180-3	chr11	70587082	70587282	+	787.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	RMER15|LTR|ERVL	24301.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	26.25	21.63	14.83	4.83	13.09	18.19	5.65	5.8	33.24	50.71	14.57	6.27
Merged-chr15-58882503-2	chr15	58882406	58882606	+	787.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-6723.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	6.06	5.79	10.84	3.62	14.32	13.17	8.64	5.24	9.83	14.56	22.61	5.64
Merged-chr2-26055276-2	chr2	26055162	26055362	+	787.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026495)	TTS (NM_026495)	-33502.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	8.08	4.02	6.85	1.61	6.55	10.03	4.65	9.81	9.44	12.55	8.54	8.14
Merged-chr7-64155972-2	chr7	64155875	64156075	+	787.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039104, intron 1 of 26)	intron (NM_001039104, intron 1 of 26)	2140.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	7.27	4.78	2.28	5.23	6.95	11.6	10.96	14.58	9.24	10.04	14.57	7.83
Merged-chr4-126057959-3	chr4	126057853	126058053	+	787.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-612.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	11.31	4.53	9.7	6.03	16.77	6.59	7.64	10.91	16.13	20.08	16.08	9.4
Merged-chr11-115083622-3	chr11	115083570	115083770	+	787.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7761.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	19.79	18.36	22.82	12.07	6.55	8.15	3.99	5.36	4.72	9.04	5.02	4.39
Merged-chr15-76294769-3	chr15	76294666	76294866	+	787.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195537, exon 1 of 7)	exon (NM_001195537, exon 1 of 7)	332.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	14.54	5.28	2.85	10.86	11.45	10.03	19.93	18.7	9.44	10.04	14.57	6.27
Merged-chr1-59895612-3	chr1	59895505	59895705	+	787.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17401.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	8.88	6.54	11.41	16.49	18.41	12.23	17.27	12.42	13.18	9.04	11.05	10.02
Merged-chr1-184824735-3	chr1	184824630	184824830	+	787.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2242.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	10.09	4.78	7.42	11.66	6.95	11.6	6.64	7.32	15.14	14.06	19.6	10.02
Merged-chr3-144696815-3	chr3	144696734	144696934	+	787.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	23501.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.88	5.03	7.42	8.04	4.09	9.72	12.95	9.22	14.36	6.53	11.05	5.64
Merged-chr13-33934815-1	chr13	33934715	33934915	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1217.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.81	1.76	2.85	1.61	2.45	5.64	6.64	7.12	5.51	3.01	6.53	5.01
Merged-chr5-41267992-1	chr5	41267892	41268092	+	787.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	439699.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.02	3.02	3.99	3.62	0.0	0.0	1.66	0.31	10.03	9.54	22.61	19.74
Merged-chr2-27697310-1	chr2	27697210	27697410	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-11982.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.86	5.53	11.98	4.83	6.95	5.96	12.95	7.96	2.75	8.03	2.51	7.52
Merged-chr7-4370630-1	chr7	4370530	4370730	+	787.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163014, intron 6 of 7)	MTA_Mm|LTR|ERVL-MaLR	27114.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0.81	3.52	3.42	4.83	4.5	11.6	5.31	3.7	14.95	12.55	22.11	11.28
Merged-chr17-43040222-1	chr17	43040122	43040322	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	23667.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.25	3.27	0.0	4.02	13.09	11.92	1.99	4.07	5.7	4.02	2.01	2.19
Merged-chr1-193799202-1	chr1	193799102	193799302	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER115|DNA|hAT-Tip100	-291672.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	4.44	5.53	4.56	12.87	4.5	9.09	2.66	6.36	1.77	2.51	6.03	5.33
Merged-chr17-51790271-1	chr17	51790171	51790371	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21783.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	8.88	3.52	7.99	4.02	6.55	1.57	4.65	8.02	6.49	3.01	4.02	3.13
Merged-chr5-122114420-1	chr5	122114320	122114520	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183307, intron 9 of 12)	intron (NM_183307, intron 9 of 12)	13469.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	8.08	7.04	4.56	2.41	9.82	10.03	3.32	7.65	6.1	9.54	9.04	7.52
Merged-chr4-126083968-1	chr4	126083868	126084068	+	787.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172701, intron 6 of 9)	ID_B1|SINE|B4	-12685.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	4.04	4.02	6.28	0.8	2.45	2.51	2.99	2.07	11.6	10.04	18.09	7.21
Merged-chr10-100950034-1	chr10	100949934	100950134	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-208399.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.81	1.51	5.7	6.03	1.64	3.76	10.63	8.94	0.79	0.0	0.5	0.94
Merged-chr5-124432575-3	chr5	124432469	124432669	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6612.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	11.71	11.07	19.4	7.24	13.91	17.87	5.31	11.19	14.95	15.57	14.07	11.9
Merged-chr7-44311043-1	chr7	44310943	44311143	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	779.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	2.42	0.75	2.28	0.0	0.82	5.02	1.0	1.49	5.9	3.51	1.51	3.13
Merged-chr11-75075539-1	chr11	75075439	75075639	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-9548.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	3.63	4.53	9.13	2.01	7.77	7.84	6.64	9.84	7.47	5.52	8.04	5.01
Merged-chr1-189659969-1	chr1	189659869	189660069	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28117.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.04	4.53	1.14	2.41	7.77	1.88	1.0	9.62	5.9	0.0	1.0	1.88
Merged-chr13-5837539-2	chr13	5837444	5837644	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	20548.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.85	4.28	10.27	1.61	12.27	7.21	7.64	7.6	9.64	20.08	18.59	7.21
Merged-chr12-80327100-2	chr12	80326997	80327197	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	64580.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	4.04	8.55	5.7	5.63	8.18	5.33	8.64	12.31	7.87	6.03	8.04	2.19
Merged-chr11-46799027-1	chr11	46798927	46799127	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11772.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.48	6.04	3.42	4.42	6.55	15.05	4.98	8.44	6.29	12.05	6.03	3.13
Merged-chr12-78747546-2	chr12	78747447	78747647	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	12.11	7.8	1.14	2.41	3.27	10.03	1.99	7.79	7.47	5.02	6.03	3.45
Merged-chr10-12813657-1	chr10	12813557	12813757	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	48078.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.81	3.52	2.85	1.61	2.45	5.64	1.0	8.47	2.75	3.51	3.52	7.21
Merged-chr17-56033060-3	chr17	56032955	56033155	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	3582.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	10.9	9.31	17.11	15.28	15.55	9.41	12.29	15.7	9.64	8.03	11.56	5.95
Merged-chr12-35021544-2	chr12	35021448	35021648	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25641.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	8.88	9.56	17.11	12.47	26.59	11.6	13.29	22.65	2.36	3.51	2.01	3.45
Merged-chr11-51936312-1	chr11	51936212	51936412	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31319.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	10.9	1.51	1.71	1.21	4.5	6.9	4.32	7.29	10.03	5.52	3.52	3.76
Merged-chr4-148591968-1	chr4	148591868	148592068	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009272, intron 1 of 6)	CpG	455.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	6.86	5.79	12.55	5.63	10.23	8.78	9.63	8.64	12.0	10.54	11.05	4.7
Merged-chr18-38419703-2	chr18	38419611	38419811	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	804.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	7.67	5.53	7.42	2.01	11.45	8.47	3.99	11.3	6.88	12.55	11.05	6.27
Merged-chr3-9897214-2	chr3	9897111	9897311	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-63532.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.85	10.82	5.13	6.84	11.45	11.29	9.3	11.69	10.42	9.54	14.57	9.71
Merged-chr7-28370081-1	chr7	28369981	28370181	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001083912, exon 4 of 19)	exon (NM_001083912, exon 4 of 19)	2581.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	2.83	2.52	5.7	0.0	4.5	1.88	4.65	2.41	2.16	6.53	4.52	2.19
Merged-chr9-57431446-1	chr9	57431346	57431546	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	8290.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	6.86	4.02	7.99	14.48	4.91	6.9	5.65	9.31	1.77	6.03	7.03	2.82
Merged-chr13-3766053-1	chr13	3765953	3766153	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38265.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.04	2.77	10.27	6.03	6.55	3.76	7.64	7.77	0.0	0.0	0.0	0.94
Merged-chr8-82373000-2	chr8	82372911	82373111	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	29575.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	12.11	17.86	5.7	1.21	7.36	22.89	5.65	2.21	9.64	8.54	6.03	0.63
Merged-chr5-8082901-1	chr5	8082801	8083001	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310440, intron 29 of 30)	intron (NM_001310440, intron 29 of 30)	26359.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	2.42	7.55	1.71	3.62	7.36	8.47	7.64	16.68	5.7	3.01	5.02	1.57
Merged-chr7-122233832-1	chr7	122233732	122233932	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	14336.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	4.04	2.77	6.85	4.42	3.68	2.51	4.98	6.48	5.11	3.01	7.03	8.14
Merged-chr10-121409826-1	chr10	121409726	121409926	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_138956)	TTS (NM_138956)	44736.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.65	3.52	5.13	2.01	15.14	8.15	4.98	7.01	4.92	3.01	4.02	5.95
Merged-chr15-81080669-2	chr15	81080582	81080782	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	24365.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.85	2.26	3.42	4.42	8.18	8.78	7.31	13.18	12.78	7.03	10.55	4.7
Merged-chr16-52470389-1	chr16	52470289	52470489	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17308.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	2.83	2.52	3.42	0.0	3.27	5.64	6.98	9.48	0.98	2.51	0.0	1.88
Merged-chr19-46901580-1	chr19	46901480	46901680	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	60771.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.4	0.5	2.28	0.8	12.68	10.03	3.65	7.6	5.11	3.01	5.53	4.07
Merged-chr10-19691470-1	chr10	19691370	19691570	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21117.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	6.86	3.27	6.28	7.64	2.86	4.39	5.65	5.55	2.95	5.02	5.02	3.76
Merged-chr11-54863128-1	chr11	54863028	54863228	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2537.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	4.04	5.28	3.42	2.41	2.45	9.09	2.33	1.79	1.18	8.03	8.04	3.45
Merged-chr1-123932402-1	chr1	123932302	123932502	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	(TC)n|Simple_repeat|Simple_repeat	113157.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	2.77	0.0	0.8	1.64	5.02	3.99	2.16	2.36	1.0	1.0	1.88
Merged-chr16-45122699-1	chr16	45122599	45122799	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026439, intron 5 of 7)	intron (NM_026439, intron 5 of 7)	28688.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	5.65	5.28	4.56	0.8	6.55	8.15	9.63	6.59	0.2	0.0	0.0	0.94
Merged-chr3-102734889-1	chr3	102734789	102734989	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243132)	promoter-TSS (NM_001243132)	119.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	6.06	3.27	3.99	4.02	1.23	7.53	2.66	8.19	4.52	7.03	8.54	6.89
Merged-chr12-75637219-1	chr12	75637119	75637319	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	-5470.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	4.44	1.51	2.28	1.61	6.14	3.14	5.31	7.82	3.93	6.03	4.52	0.94
Merged-chr9-44094919-3	chr9	44094812	44095012	+	786.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-6858.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	12.52	10.82	21.11	8.04	17.59	15.37	9.3	17.55	17.7	3.01	12.06	7.52
Merged-chr10-127555903-3	chr10	127555809	127556009	+	786.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 54 of 88)	intron (NM_008512, intron 54 of 88)	-21350.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	8.48	13.08	23.96	5.23	4.5	21.01	11.29	13.74	16.92	9.54	6.03	7.83
Merged-chr4-84077452-2	chr4	84077345	84077545	+	786.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32566.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	10.09	10.06	10.84	13.67	10.23	17.25	11.96	26.24	0.0	0.0	0.0	0.0
Merged-chr2-62441454-3	chr2	62441351	62441551	+	786.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29220.0	NM_001159543	13482.0	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	4.04	8.8	18.83	13.67	6.95	4.39	10.63	11.27	9.83	3.51	12.56	12.53
Merged-chr3-116437140-3	chr3	116437044	116437244	+	786.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER72|LTR|ERV1	-13112.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	5.25	4.53	14.26	4.83	8.59	7.84	1.33	9.06	12.59	6.53	6.53	8.77
Merged-chr9-59760744-3	chr9	59760663	59760863	+	786.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	9589.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	7.27	8.05	9.7	7.64	11.45	19.76	4.65	6.14	12.19	20.08	9.04	12.22
Merged-chr4-86538158-2	chr4	86538062	86538262	+	786.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	B2_Mm2|SINE|B2	20141.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	8.88	11.32	2.28	4.83	8.59	12.86	4.32	4.35	12.78	10.04	13.06	10.02
Merged-chr18-80715007-3	chr18	80714915	80715115	+	786.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1944.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	14.94	6.29	22.25	8.85	12.68	6.27	12.62	14.13	7.08	12.55	19.09	6.27
Merged-chr11-115297558-3	chr11	115297350	115297550	+	786.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178035)	promoter-TSS (NM_178035)	96.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	2.42	5.28	3.42	9.65	4.91	6.9	8.64	6.42	4.72	14.06	4.52	10.34
Merged-chr15-86213417-3	chr15	86213279	86213479	+	786.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1080.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.23	4.78	6.28	5.63	4.91	8.78	7.97	8.1	2.36	13.56	11.05	8.14
Merged-chr17-7873889-3	chr17	7873761	7873961	+	786.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52139.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	13.33	10.06	7.42	10.05	11.45	10.66	6.64	8.83	6.88	8.54	8.04	10.34
Merged-chr8-119827560-3	chr8	119827476	119827676	+	786.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13003.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.86	9.81	6.85	1.21	2.86	14.74	7.97	15.67	8.85	6.03	12.56	11.28
Merged-chr19-34198178-3	chr19	34198082	34198282	+	786.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	Lx5c|LINE|L1	5248.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.65	8.3	7.99	12.47	17.18	8.15	9.63	8.16	13.18	13.05	8.54	13.78
Merged-chr5-38483734-3	chr5	38483646	38483846	+	786.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012363)	promoter-TSS (NM_001012363)	-361.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	18.17	5.28	6.28	11.26	11.45	12.54	13.62	13.23	9.44	12.55	22.61	7.21
Merged-chr16-38091996-3	chr16	38091887	38092087	+	786.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-2727.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	5.65	5.79	13.12	26.95	7.77	7.53	9.3	17.36	14.16	18.58	16.58	10.02
Merged-chr2-35827028-3	chr2	35826940	35827140	+	786.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	7850.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	18.57	10.82	11.98	24.13	13.5	7.84	10.96	19.96	25.77	13.05	15.07	11.59
Merged-chr7-25577063-1	chr7	25576963	25577163	+	786.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37059.0	NM_001113369	26367.0	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.81	1.76	0.57	7.64	6.95	6.59	5.31	0.28	4.13	4.52	2.01	2.51
Merged-chr1-32249750-2	chr1	32249640	32249840	+	786.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133235, intron 2 of 8)	Lx6|LINE|L1	77018.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	4.04	3.27	2.28	0.0	9.0	6.59	3.32	7.63	6.69	9.54	3.52	15.66
Merged-chr8-26950025-2	chr8	26949931	26950131	+	786.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-27305.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.86	11.57	4.56	11.26	16.77	11.29	7.31	17.22	7.67	1.51	8.54	2.19
Merged-chr2-17741674-3	chr2	17741572	17741772	+	786.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10604.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	8.88	14.09	9.7	4.02	12.68	19.13	8.64	6.14	17.7	16.07	19.6	8.14
Merged-chr5-148746949-2	chr5	148746859	148747059	+	786.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44D|LTR|ERVK	5119.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	7.27	2.77	6.85	2.82	7.36	7.53	5.98	4.01	38.35	26.11	27.13	13.47
Merged-chr12-34847494-3	chr12	34847398	34847598	+	786.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69597.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.9	11.57	19.4	10.05	11.45	7.21	4.32	11.1	8.85	14.06	15.07	6.58
Merged-chr4-128957393-3	chr4	128957287	128957487	+	786.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301841, intron 2 of 8)	intron (NM_001301841, intron 2 of 8)	5068.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	8.48	10.31	13.12	4.83	6.14	10.35	7.97	8.8	9.24	14.06	12.06	9.71
Merged-chr7-92565039-3	chr7	92564942	92565142	+	786.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025515, intron 1 of 8)	intron (NM_025515, intron 1 of 8)	3893.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	8.48	10.06	14.26	7.64	6.95	7.53	6.31	13.6	14.36	0.0	19.09	13.16
Merged-chr1-172206344-3	chr1	172206253	172206453	+	786.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	451.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	9.29	15.34	17.11	14.48	9.82	31.67	11.29	10.18	10.42	15.57	20.6	6.27
Merged-chr18-88932319-1	chr18	88932219	88932419	+	786.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38112.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.81	1.01	1.14	5.63	5.32	9.41	8.97	40.74	0.39	0.0	4.52	1.57
Merged-chr12-91184681-1	chr12	91184581	91184781	+	786.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	74452.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	1.62	3.02	1.14	4.42	8.18	5.33	2.99	3.03	3.15	6.53	8.04	3.76
Merged-chr3-137293346-1	chr3	137293246	137293446	+	786.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47732.0	NM_001163522	59308.0	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	2.02	5.53	5.7	7.24	6.14	6.9	9.97	8.92	3.54	7.03	6.53	4.07
Merged-chr13-89539294-3	chr13	89539203	89539403	+	786.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1333.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	16.15	6.04	11.41	10.86	4.5	5.96	1.99	6.25	24.19	18.58	41.71	14.1
Merged-chr5-103680519-3	chr5	103680425	103680625	+	786.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-24793.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	9.69	8.3	5.7	10.86	16.77	10.35	6.31	12.25	21.05	19.08	14.57	17.54
Merged-chr9-111310138-3	chr9	111310048	111310248	+	786.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-1591.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	12.92	16.85	12.55	14.48	6.95	13.17	12.62	12.0	12.0	8.54	11.05	12.53
Merged-chr10-76344905-2	chr10	76344809	76345009	+	786.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081419, intron 1 of 37)	CpG	382.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	9.29	8.3	14.83	4.83	10.64	12.23	9.97	7.93	11.6	8.03	12.06	5.33
Merged-chr3-101003952-4	chr3	101003861	101004061	+	786.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 7 of 8)	intron (NM_001167906, intron 7 of 8)	25534.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	12.92	9.31	9.7	8.04	11.45	11.29	8.3	4.88	8.26	7.03	10.05	6.27
Merged-chr12-96615948-1	chr12	96615848	96616048	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-568726.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	3.23	5.03	3.99	2.01	6.14	3.45	7.64	8.92	10.62	4.02	7.54	6.27
Merged-chr8-122475568-2	chr8	122475468	122475668	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	496.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	14.13	10.06	8.56	3.22	6.95	10.03	4.65	5.05	6.88	4.52	4.02	9.08
Merged-chr5-143547596-3	chr5	143547511	143547711	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1095.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	6.46	9.56	16.54	4.02	11.45	5.64	4.98	8.47	13.77	14.06	11.05	7.21
Merged-chr19-3379212-2	chr19	3379120	3379320	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-9637.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	19.38	14.59	8.56	7.24	15.55	7.21	7.64	14.13	12.19	12.55	12.06	11.9
Merged-chr5-43031422-1	chr5	43031322	43031522	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202041.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.06	2.77	1.14	12.07	4.5	4.08	12.62	10.29	4.52	3.01	14.07	2.51
Merged-chr2-164798763-2	chr2	164798649	164798849	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133240, intron 3 of 5)	B2_Mm2|SINE|B2	6132.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	4.04	9.31	9.7	4.83	11.05	11.6	3.32	3.64	9.83	6.03	13.06	8.46
Merged-chrX-150813992-3	chrX	150813885	150814085	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358566)	promoter-TSS (NM_001358566)	-278.0	NM_001199246	80884.0	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	10.09	9.56	5.13	16.09	14.73	5.33	4.32	16.77	13.18	10.04	17.59	6.58
Merged-chr14-77832578-2	chr14	77832463	77832663	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 5 of 5)	RMER6B|LTR|ERVK	-33595.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	7.27	6.54	4.56	7.24	6.55	6.9	4.32	4.46	54.88	48.7	52.76	25.69
Merged-chr2-102820731-1	chr2	102820631	102820831	+	786.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-73971.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	7.67	4.78	9.7	5.63	2.45	0.94	2.33	1.43	9.64	20.59	24.62	10.96
Merged-chr15-63540441-2	chr15	63540355	63540555	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-60847.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.65	4.02	11.41	8.85	34.36	18.5	42.85	63.0	8.65	7.53	14.57	5.64
Merged-chr5-123369058-2	chr5	123368932	123369132	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029850, intron 4 of 5)	intron (NM_029850, intron 4 of 5)	24584.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	7.67	3.27	4.56	2.41	3.68	6.9	0.33	7.32	13.77	4.02	5.53	8.46
Merged-chr2-180025410-2	chr2	180025345	180025545	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177727, intron 1 of 8)	CpG	458.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	9.69	10.82	4.56	0.8	8.18	3.14	6.64	6.93	10.62	11.05	10.05	11.28
Merged-chr16-57960035-1	chr16	57959935	57960135	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-205298.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	6.46	2.01	0.0	0.0	4.91	5.64	10.3	7.93	0.0	0.0	0.0	0.63
Merged-chr1-131094082-3	chr1	131093997	131094197	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	3746.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	10.9	6.54	12.55	9.65	11.05	7.84	7.97	10.65	25.37	19.58	25.63	21.62
Merged-chr3-107994340-1	chr3	107994240	107994440	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7920.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	5.25	3.02	12.55	8.85	13.09	20.7	6.64	4.26	8.46	0.5	6.03	4.7
Merged-chr17-86484520-3	chr17	86484407	86484607	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 6 of 14)	intron (NM_011104, intron 6 of 14)	-197329.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	17.77	11.07	1.71	14.48	6.55	7.84	0.66	10.71	10.03	8.54	14.07	5.64
Merged-chr12-13563865-1	chr12	13563765	13563965	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	63781.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	3.63	4.28	7.42	2.41	5.32	6.9	7.31	8.27	5.9	9.04	5.53	2.82
Merged-chr5-107950823-3	chr5	107950721	107950921	+	786.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	36256.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	7.27	5.28	14.26	15.28	11.86	6.59	15.94	13.04	12.19	5.52	14.07	8.14
Merged-chr8-25226637-2	chr8	25226532	25226732	+	786.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25090.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	5.25	10.56	3.42	8.85	6.95	7.53	8.3	9.39	11.01	17.07	18.09	8.14
Merged-chr14-30655693-3	chr14	30655586	30655786	+	786.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 1 of 12)	PB1D10|SINE|Alu	1311.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	12.92	12.83	6.85	6.44	8.59	9.41	6.31	12.67	8.65	4.52	8.04	9.71
Merged-chr7-113594572-3	chr7	113594466	113594666	+	786.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29579.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	10.5	14.09	11.41	16.49	11.45	9.72	4.32	18.48	12.0	5.02	19.6	7.52
Merged-chr8-77485025-3	chr8	77485010	77485210	+	786.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-31946.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	2.83	4.78	2.85	6.84	11.05	4.39	5.98	11.3	16.72	6.53	12.56	8.77
Merged-chr13-45358436-2	chr13	45358347	45358547	+	786.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31295.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.65	6.54	10.27	8.45	11.05	15.05	19.27	11.64	2.56	7.03	0.0	9.71
Merged-chr13-107094765-2	chr13	107094663	107094863	+	786.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72193.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.44	6.04	6.85	5.23	6.95	8.15	6.98	9.59	10.62	7.03	14.57	12.22
Merged-chr9-59732972-3	chr9	59732863	59733063	+	786.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17686.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	9.69	3.77	9.13	4.83	6.95	12.86	3.32	11.97	16.52	12.55	15.07	6.58
Merged-chr13-69509761-3	chr13	69509662	69509862	+	786.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198600, intron 5 of 12)	B2_Mm2|SINE|B2	24102.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	10.09	10.56	11.98	11.26	15.55	11.6	7.97	18.59	17.7	14.56	27.64	8.77
Merged-chr4-137578414-3	chr4	137578321	137578521	+	786.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3241.0	NM_001033979	435811.0	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	11.71	10.31	7.99	11.66	19.64	11.6	5.65	8.8	12.19	6.53	8.04	7.83
Merged-chr3-116860557-2	chr3	116860448	116860648	+	786.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113478, intron 1 of 16)	intron (NM_001113478, intron 1 of 16)	981.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	5.25	3.52	7.99	8.85	4.91	6.59	7.64	8.1	24.0	12.05	11.05	8.77
Merged-chr9-14699163-2	chr9	14699066	14699266	+	786.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36144.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	5.65	4.53	5.13	6.84	9.0	3.76	7.31	6.95	10.82	8.03	15.58	4.07
Merged-chr2-50981272-2	chr2	50981124	50981324	+	786.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71540.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	1.21	7.8	4.56	9.25	3.27	3.76	5.31	6.2	6.88	2.01	6.03	8.46
Merged-chr14-98606001-1	chr14	98605901	98606101	+	786.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-436236.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	2.01	1.14	1.61	1.64	7.53	8.97	14.55	2.95	1.0	8.04	0.63
Merged-chr7-27545859-1	chr7	27545759	27545959	+	786.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011116, intron 1 of 13)	RMER19B|LTR|ERVK	7359.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.4	3.02	2.28	3.62	5.32	2.2	5.31	2.5	5.11	3.01	7.03	0.94
Merged-chr7-80777283-1	chr7	80777183	80777383	+	786.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	26048.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.81	0.0	1.14	0.0	1.64	1.25	0.66	0.79	11.01	6.03	4.02	3.13
Merged-chr6-125426043-3	chr6	125425953	125426153	+	786.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45549.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	10.9	4.28	13.69	12.87	8.59	10.03	12.29	12.9	10.62	17.07	13.06	5.95
Merged-chr13-42820160-2	chr13	42820077	42820277	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-46070.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	9.29	4.78	3.99	3.22	13.09	10.98	7.97	11.16	12.78	14.06	12.56	5.01
Merged-chr3-65820070-2	chr3	65819968	65820168	+	786.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001166659, exon 12 of 13)	exon (NM_001166659, exon 12 of 13)	138181.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.48	2.01	6.28	14.08	4.5	8.78	5.31	8.5	6.29	7.03	6.53	4.7
Merged-chr11-104003678-2	chr11	104003579	104003779	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	36808.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.25	6.54	2.85	3.22	8.18	12.54	9.97	7.63	7.47	7.03	14.07	8.14
Merged-chr5-99293966-2	chr5	99293869	99294069	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41042.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.65	3.52	7.42	7.64	6.55	9.09	8.3	8.1	12.19	9.54	18.59	6.27
Merged-chr7-65500962-2	chr7	65500922	65501122	+	786.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81009.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	7.27	3.77	5.7	4.02	6.95	4.08	6.31	10.88	2.16	0.0	4.02	1.88
Merged-chr13-119325725-2	chr13	119325613	119325813	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83298.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.04	4.53	5.7	4.02	6.55	3.45	14.95	7.49	5.11	5.02	5.53	4.39
Merged-chr16-36795096-2	chr16	36794979	36795179	+	786.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134111, intron 5 of 5)	intron (NM_134111, intron 5 of 5)	-10117.0	NM_021301	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.04	3.77	12.55	19.71	8.59	6.9	3.32	6.11	5.7	2.51	1.51	2.51
Merged-chr9-57644012-3	chr9	57643926	57644126	+	786.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1627.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.27	5.53	10.27	12.07	4.5	4.7	8.64	21.5	9.83	2.01	20.6	8.14
Merged-chr12-104190504-3	chr12	104190406	104190606	+	786.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23948.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	8.48	3.52	15.4	14.08	7.36	1.57	1.66	8.33	13.18	9.04	17.59	7.21
Merged-chr1-161999550-2	chr1	161999460	161999660	+	786.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-5409.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.65	3.02	1.14	6.44	6.95	6.59	10.3	8.19	10.42	7.53	11.56	6.27
Merged-chr9-116096901-1	chr9	116096801	116097001	+	786.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	78462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.23	2.01	5.7	4.83	9.82	6.59	8.64	10.04	3.34	7.03	12.56	5.01
Merged-chr16-89774528-1	chr16	89774428	89774628	+	786.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43824.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.04	4.78	0.0	8.04	10.64	7.21	2.99	9.25	12.78	13.56	4.52	6.58
Merged-chr9-70651111-1	chr9	70651011	70651211	+	786.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172772, intron 1 of 8)	RMER5|LTR|ERV1	6063.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	6.46	1.01	13.69	5.63	7.36	9.09	10.3	16.07	5.9	5.02	6.53	9.71
Merged-chr1-181950909-3	chr1	181950809	181951009	+	786.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	69071.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	8.88	17.61	26.24	13.27	6.95	5.64	6.98	11.47	20.65	7.53	11.56	10.34
Merged-chr10-127618638-4	chr10	127618471	127618671	+	786.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	2577.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.65	1.01	2.28	1.61	2.86	4.39	6.98	4.6	7.87	6.53	16.08	9.4
Merged-chr8-84686218-3	chr8	84686153	84686353	+	786.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	1609.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	6.86	12.83	4.56	8.45	10.64	11.6	6.64	10.37	8.06	5.02	11.56	7.52
Merged-chr12-41349578-3	chr12	41349483	41349683	+	786.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	L1MA9|LINE|L1	136474.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	11.71	5.03	7.42	9.65	11.05	22.89	12.29	14.02	14.36	9.04	15.58	5.64
Merged-chr14-57395093-2	chr14	57394993	57395193	+	786.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	3390.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.86	2.77	13.69	6.44	4.91	7.84	6.31	7.68	9.05	16.07	15.58	6.89
Merged-chr18-69544047-2	chr18	69543950	69544150	+	786.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	197890.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.81	8.05	5.7	2.41	6.14	12.23	9.63	16.21	10.03	11.05	13.06	8.46
Merged-chr13-81041836-3	chr13	81041738	81041938	+	786.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	77764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	10.5	5.03	7.42	12.07	13.09	7.21	6.98	16.93	19.08	11.05	4.02	15.04
Merged-chr5-67532544-3	chr5	67532448	67532648	+	786.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68650.0	NR_015582	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	7.27	6.29	9.13	15.69	24.55	17.87	3.32	10.29	15.54	9.04	14.07	9.71
Merged-chr11-83063352-2	chr11	83063282	83063482	+	786.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1730.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	6.86	3.02	3.42	1.61	17.18	7.84	6.31	9.25	11.21	8.54	7.54	9.71
Merged-chr10-75951807-2	chr10	75951713	75951913	+	786.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2701.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	7.67	6.29	5.13	6.03	9.82	9.41	3.99	8.8	10.23	10.54	3.52	7.83
Merged-chr19-7268190-3	chr19	7268047	7268247	+	786.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320554)	promoter-TSS (NM_001320554)	-132.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	11.71	7.55	6.85	7.24	6.55	12.23	2.66	6.73	8.46	13.05	10.55	8.46
Merged-chr18-69592581-3	chr18	69592494	69592694	+	786.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	246434.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.06	15.09	8.56	8.85	9.0	9.41	20.26	6.95	11.01	12.55	17.08	7.21
Merged-chr15-75923459-3	chr15	75923363	75923563	+	786.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-1903.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	8.48	9.31	9.7	8.85	14.32	10.66	1.66	9.22	11.01	14.06	16.08	11.28
Merged-chr4-152131420-4	chr4	152131307	152131507	+	786.041687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207688, intron 3 of 10)	CpG-10714	-2482.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	8.08	11.07	11.41	2.01	4.91	2.51	9.63	6.14	3.74	11.05	5.53	3.13
Merged-chr17-28518195-3	chr17	28518097	28518297	+	786.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12664.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	19.38	8.05	13.12	9.25	39.27	9.72	14.62	34.71	7.87	18.58	14.07	10.02
Merged-chr10-67689782-2	chr10	67689703	67689903	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117844.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.88	5.79	7.99	6.44	3.27	10.98	11.63	14.61	6.88	7.53	10.55	3.13
Merged-chr19-58118983-1	chr19	58118883	58119083	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	67816.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.81	3.52	5.7	8.45	8.18	4.7	8.64	13.6	6.29	11.55	10.55	5.33
Merged-chr4-89353901-2	chr4	89353812	89354012	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42880.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	9.29	8.8	4.56	10.46	11.45	21.64	7.64	8.13	4.13	13.05	7.03	0.0
Merged-chr11-86583940-1	chr11	86583840	86584040	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_029738)	TTS (NR_029738)	218.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	3.23	2.52	3.99	0.8	0.41	0.63	2.33	0.45	3.15	1.51	3.52	3.45
Merged-chr1-120100743-1	chr1	120100643	120100843	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20176.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	3.63	1.01	3.42	4.02	2.45	6.59	4.32	9.17	3.15	8.03	6.53	2.51
Merged-chr10-40139902-2	chr10	40139830	40140030	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	2324.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.27	6.79	3.42	4.42	4.5	13.48	7.64	11.97	8.65	11.05	7.03	10.65
Merged-chr1-17607334-1	chr1	17607234	17607434	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	5433.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	4.44	3.02	3.99	5.63	4.5	4.7	4.98	8.55	2.75	1.0	7.54	3.45
Merged-chr10-84087742-3	chr10	84087629	84087829	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	12968.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.04	5.03	10.27	11.26	5.73	13.17	16.94	25.04	11.21	19.58	32.16	10.34
Merged-chr2-158028715-1	chr2	158028615	158028815	+	786.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029282)	promoter-TSS (NM_029282)	218.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	10.5	10.06	7.42	6.44	10.64	13.48	9.3	6.95	13.77	20.59	14.57	17.54
Merged-chr12-111599654-2	chr12	111599553	111599753	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	25143.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	5.65	5.53	9.7	0.4	4.09	7.21	0.66	0.0	24.19	13.56	7.54	5.95
Merged-chr13-65242485-1	chr13	65242385	65242585	+	786.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-36369.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	5.65	4.02	0.0	2.82	6.14	2.51	0.66	3.93	10.62	13.05	14.07	3.45
Merged-chr12-86166412-2	chr12	86166315	86166515	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2926.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	1.62	3.52	5.13	10.05	3.27	3.45	8.97	9.03	4.33	1.0	9.55	7.21
Merged-chr11-26210588-1	chr11	26210488	26210688	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	-12.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	16.15	10.56	12.55	15.28	22.91	12.23	13.29	14.38	10.42	9.04	22.61	16.29
Merged-chr2-45054680-1	chr2	45054580	45054780	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-31503.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	1.62	1.51	0.0	2.01	2.45	3.76	6.64	3.9	1.77	1.0	3.52	4.39
Merged-chr8-88646376-1	chr8	88646276	88646476	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-971.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	2.83	5.28	1.14	6.03	2.45	3.14	7.64	5.36	0.98	2.51	2.51	3.13
Merged-chr4-88458867-2	chr4	88458766	88458966	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19940.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.25	3.52	10.27	9.65	0.41	1.25	2.33	4.35	17.31	4.02	17.59	4.39
Merged-chr7-45405221-3	chr7	45405132	45405332	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-728.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	11.31	6.54	0.57	8.04	9.0	8.78	1.66	9.73	13.18	13.05	8.04	10.34
Merged-chr11-72550348-1	chr11	72550248	72550448	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029932)	promoter-TSS (NM_029932)	-102.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	5.25	2.52	2.28	2.01	4.09	6.9	9.3	6.11	4.52	6.03	4.02	2.51
Merged-chr10-7269360-1	chr10	7269260	7269460	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57123.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	1.62	0.75	3.42	2.01	8.18	4.7	3.99	7.54	3.93	0.0	2.51	3.76
Merged-chr14-54939542-1	chr14	54939442	54939642	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026066)	TTS (NM_026066)	3045.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	3.23	1.76	3.99	6.44	4.5	7.84	1.66	7.37	4.13	3.51	9.04	4.39
Merged-chr15-50802415-1	chr15	50802315	50802515	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	86634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.06	3.52	3.42	5.23	11.05	3.14	6.31	9.36	5.11	5.02	4.52	1.25
Merged-chr4-97662987-1	chr4	97662887	97663087	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-78396.0	NR_015513	319865.0	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	1.62	1.01	5.13	4.83	3.27	5.64	9.3	13.12	2.36	1.51	8.04	5.95
Merged-chr2-68782589-2	chr2	68782555	68782755	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78786.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	1.62	2.52	9.13	3.22	4.5	3.45	2.99	3.73	8.65	3.01	6.53	4.07
Merged-chr4-138013027-1	chr4	138012927	138013127	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	15202.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.06	5.79	2.85	6.03	8.59	5.33	5.31	10.01	0.0	2.01	1.0	0.63
Merged-chr8-73356164-1	chr8	73356064	73356264	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2624.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	6.46	3.52	7.99	6.44	11.05	4.7	1.66	6.56	5.9	5.02	2.51	6.58
Merged-chr2-144294445-1	chr2	144294345	144294545	+	786.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23541.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.23	4.02	13.69	7.64	7.77	4.39	6.98	2.61	11.8	24.6	28.14	9.4
Merged-chr6-100480648-1	chr6	100480548	100480748	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-46752.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	6.06	1.51	6.85	7.24	4.91	4.39	3.65	8.47	1.57	1.51	1.51	2.82
Merged-chr15-90618089-1	chr15	90617989	90618189	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357979, intron 4 of 18)	intron (NM_001357979, intron 4 of 18)	61299.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	1.62	2.52	4.56	1.61	7.77	5.96	6.64	7.15	5.31	4.02	2.01	1.57
Merged-chr11-12559397-1	chr11	12559297	12559497	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94437.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	4.04	8.05	6.28	7.64	5.32	6.59	8.97	8.8	7.47	4.52	5.53	7.21
Merged-chr15-76783786-3	chr15	76783696	76783896	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	34374.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	15.75	8.55	15.97	6.84	6.55	5.96	14.95	13.91	7.67	9.04	10.05	5.95
Merged-chr6-113622316-3	chr6	113622230	113622430	+	785.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	8.08	5.79	12.55	11.26	14.32	19.13	4.65	15.64	13.57	14.06	22.11	18.8
Merged-chr12-116620080-3	chr12	116619970	116620170	+	785.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	134350.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	6.46	10.82	9.13	6.44	5.32	14.11	7.31	6.53	11.21	6.03	16.08	12.53
Merged-chr17-70728945-3	chr17	70728893	70729093	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	117784.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.85	10.56	5.7	8.04	6.95	9.41	14.95	9.59	8.65	6.53	5.02	8.14
Merged-chr6-39415973-3	chr6	39415870	39416070	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018810, intron 1 of 7)	B3|SINE|B2	3806.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	8.08	8.3	9.13	4.83	11.45	13.48	3.99	10.6	22.82	11.55	17.08	10.34
Merged-chr3-142559901-3	chr3	142559797	142559997	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	-147.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	6.46	9.06	7.99	6.03	9.41	9.72	5.65	4.93	10.62	6.53	5.02	2.51
Merged-chr3-105020517-3	chr3	105020394	105020594	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	32459.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	12.52	6.04	6.85	8.04	26.18	6.27	12.29	16.46	10.82	9.54	11.05	5.33
Merged-chr8-79362588-3	chr8	79362482	79362682	+	785.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 2 of 6)	L2c|LINE|L2	36886.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	10.9	9.31	18.25	12.47	10.64	7.84	6.64	12.08	14.95	4.02	12.06	12.84
Merged-chr17-33998843-2	chr17	33998739	33998939	+	785.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	1494.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	7.67	18.36	15.4	12.07	7.77	4.39	4.32	3.76	14.75	12.55	7.03	11.9
Merged-chr11-32300747-3	chr11	32300642	32300842	+	785.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175000, exon 3 of 3)	exon (NM_175000, exon 3 of 3)	673.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	14.13	16.35	18.25	27.35	2.45	6.27	10.96	4.65	11.21	15.06	18.59	12.53
Merged-chr9-45408536-2	chr9	45408427	45408627	+	785.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_052823, intron 3 of 5)	intron (NM_052823, intron 3 of 5)	2450.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	4.85	6.54	3.42	2.01	9.82	10.98	4.98	8.24	12.39	12.55	7.03	4.39
Merged-chr14-32192586-2	chr14	32192485	32192685	+	785.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016897, intron 4 of 6)	intron (NM_016897, intron 4 of 6)	9306.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	9.29	5.53	9.13	8.04	9.82	11.29	1.66	6.64	12.39	7.03	12.56	4.7
Merged-chr7-80864986-3	chr7	80864870	80865070	+	785.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	2862.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.06	9.81	19.97	18.1	10.23	14.42	6.31	6.64	10.03	7.53	2.51	5.95
Merged-chr1-171183667-1	chr1	171183567	171183767	+	785.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	12601.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	2.83	2.52	1.14	0.4	5.73	3.14	2.33	1.77	12.0	16.07	17.08	11.59
Merged-chr13-47216481-2	chr13	47216373	47216573	+	785.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	22470.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.02	9.81	2.28	0.0	25.36	24.77	5.98	6.31	16.52	12.05	2.51	7.52
Merged-chr12-111433197-3	chr12	111433082	111433282	+	785.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9479.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	14.94	10.56	10.84	2.01	13.09	10.98	4.32	10.04	11.6	24.1	21.61	6.89
Merged-chr19-11957570-1	chr19	11957470	11957670	+	785.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8274.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.81	2.77	1.14	0.8	0.82	0.31	0.66	0.28	17.51	13.05	13.06	16.29
Merged-chr1-31034135-3	chr1	31034027	31034227	+	785.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136907, intron 2 of 3)	intron (NR_136907, intron 2 of 3)	62327.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	5.65	9.06	12.55	8.85	8.59	5.02	8.64	12.22	9.64	20.59	32.66	26.0
Merged-chr11-70670109-3	chr11	70669979	70670179	+	785.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	-663.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	18.17	14.84	7.99	5.63	9.82	8.47	2.33	3.76	9.05	10.54	10.05	7.21
Merged-chr19-5232823-3	chr19	5232715	5232915	+	785.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	40304.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	10.09	4.53	7.99	12.47	5.73	9.41	5.65	10.71	10.23	9.04	15.58	15.66
Merged-chr12-91746610-2	chr12	91746507	91746707	+	785.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	MTC|LTR|ERVL-MaLR	39829.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.23	2.52	2.28	3.22	7.36	11.29	9.97	10.4	9.24	5.02	15.07	16.6
Merged-chr5-8312498-2	chr5	8312392	8312592	+	785.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 3 of 28)	MIRc|SINE|MIR	55668.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.23	1.26	5.7	6.84	4.5	6.27	4.65	9.08	3.54	1.0	6.53	3.45
Merged-chr7-75612151-2	chr7	75612088	75612288	+	785.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 7 of 36)	intron (NM_029332, intron 7 of 36)	156654.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	8.48	6.04	11.98	6.03	5.73	4.39	3.32	11.27	1.38	2.01	1.0	3.13
Merged-chr2-164823416-2	chr2	164823312	164823512	+	785.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	726.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	6.06	7.8	4.56	2.41	9.0	17.87	8.64	8.75	3.93	13.05	14.07	6.89
Merged-chr2-16220846-1	chr2	16220746	16220946	+	785.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 37 of 38)	AT_rich|Low_complexity|Low_complexity	-135458.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	8.88	1.01	0.0	3.62	6.55	5.02	7.31	6.03	9.05	12.55	7.03	0.63
Merged-chr16-22444559-2	chr16	22444482	22444682	+	785.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-5012.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	10.09	5.28	6.85	8.45	8.59	2.82	2.33	3.31	12.98	3.51	12.06	5.33
Merged-chr14-76415663-5	chr14	76415517	76415717	+	785.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207652)	promoter-TSS (NM_207652)	-204.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.25	8.8	10.27	16.49	6.95	7.53	12.62	14.83	10.82	5.02	14.07	10.34
Merged-chr9-83806231-3	chr9	83806119	83806319	+	785.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148941)	promoter-TSS (NM_148941)	86.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	14.13	7.8	13.69	5.23	6.55	9.41	14.62	14.83	10.42	9.04	11.56	4.39
Merged-chr10-99088436-3	chr10	99088341	99088541	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18641.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	21.0	8.55	15.4	6.03	4.5	13.48	7.64	5.64	14.55	12.05	16.58	10.65
Merged-chr15-99105529-3	chr15	99105386	99105586	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_176835)	TTS (NM_176835)	6002.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	10.09	15.59	6.28	3.22	1.64	15.99	4.32	3.62	17.9	20.59	19.09	2.19
Merged-chr11-109353352-1	chr11	109353252	109353452	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	6485.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	12.11	10.06	18.25	4.02	1.23	5.02	0.0	1.18	1.18	1.51	2.51	1.25
Merged-chr10-127746055-3	chr10	127745945	127746145	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5753.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	8.08	5.28	19.4	4.83	10.23	10.35	11.29	15.03	18.1	5.52	21.1	8.46
Merged-chr6-115343243-3	chr6	115343066	115343266	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-17785.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	12.52	8.55	5.13	8.85	4.09	10.35	2.66	16.04	5.31	5.02	7.54	10.65
Merged-chr2-80176573-2	chr2	80176470	80176670	+	785.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46912.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	3.27	2.28	3.22	1.64	7.21	3.32	4.74	34.03	11.55	27.64	13.78
Merged-chr19-5848338-3	chr19	5848237	5848437	+	785.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2857.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.06	3.52	15.4	4.02	5.73	12.54	13.95	8.92	11.6	8.03	16.58	8.46
Merged-chr6-145307987-2	chr6	145307901	145308101	+	785.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	57449.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0.0	1.26	7.42	5.63	5.32	7.53	9.63	5.75	9.24	11.55	9.55	10.65
Merged-chr13-56758639-3	chr13	56758544	56758744	+	785.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54976.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	9.29	25.15	10.27	9.25	7.36	11.92	10.3	5.47	7.08	1.51	13.06	5.95
Merged-chr18-69402199-2	chr18	69402107	69402307	+	785.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	56047.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.85	2.77	0.0	2.82	6.55	0.31	6.31	10.96	9.44	17.57	24.62	9.08
Merged-chr1-155564991-3	chr1	155564883	155565083	+	785.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026683, intron 2 of 3)	intron (NM_026683, intron 2 of 3)	6863.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	13.33	7.55	13.12	10.86	9.0	16.62	5.98	12.36	15.34	7.03	11.05	10.96
Merged-chr18-54963319-2	chr18	54963237	54963437	+	785.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	26843.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.25	6.29	7.99	4.42	6.55	8.78	8.3	7.88	8.26	8.03	12.06	8.46
Merged-chr9-45388809-2	chr9	45388715	45388915	+	785.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-10894.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	6.06	8.55	2.28	10.86	12.27	8.78	4.65	8.61	18.88	13.56	21.1	8.14
Merged-chr15-78300975-2	chr15	78300877	78301077	+	785.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287389, intron 1 of 11)	B4|SINE|B4	4744.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	9.29	7.55	12.55	9.25	13.09	5.33	8.64	10.91	18.69	9.54	11.05	3.13
Merged-chr11-82747214-2	chr11	82747111	82747311	+	785.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009839, intron 5 of 13)	intron (NM_009839, intron 5 of 13)	17110.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	4.04	6.04	5.13	12.07	8.18	14.11	11.63	14.69	11.41	5.52	10.55	7.83
Merged-chr13-28482053-3	chr13	28481959	28482159	+	785.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	228814.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	12.92	13.08	10.84	15.69	17.18	16.62	13.29	23.83	9.44	10.04	9.55	5.64
Merged-chr3-8245373-3	chr3	8245289	8245489	+	785.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217709.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	24.23	23.14	16.54	18.5	15.96	10.98	10.63	5.89	6.69	7.03	13.06	22.24
Merged-chr8-57653498-4	chr8	57653381	57653581	+	785.50415	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144731)	promoter-TSS (NM_144731)	-426.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.25	8.8	12.55	13.67	8.18	6.59	9.3	12.36	9.24	9.04	7.03	7.52
Merged-chr6-90569873-2	chr6	90569779	90569979	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027406, exon 10 of 23)	exon (NM_027406, exon 10 of 23)	19086.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	6.86	3.52	6.28	4.02	1.23	4.08	8.97	9.36	7.67	11.55	11.56	4.39
Merged-chr11-54146280-1	chr11	54146180	54146380	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45356.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	18.57	7.55	3.99	7.24	6.55	9.41	7.31	11.72	5.9	12.05	4.02	4.7
Merged-chr2-164787210-2	chr2	164787106	164787306	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133924, intron 2 of 2)	MIR|SINE|MIR	1185.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	8.88	6.29	8.56	3.62	17.59	4.7	12.29	17.61	7.67	4.52	10.05	7.21
Merged-chr18-4254874-1	chr18	4254774	4254974	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89042.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	1.21	4.02	1.14	0.4	7.36	7.53	7.97	10.12	6.69	12.05	8.54	3.13
Merged-chr13-18810187-3	chr13	18810093	18810293	+	785.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	92901.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	11.71	11.82	5.7	9.65	9.41	8.15	5.65	9.81	11.8	13.05	12.06	12.53
Merged-chr3-21468187-2	chr3	21468055	21468255	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-608497.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	1.62	1.01	1.14	7.64	3.68	3.45	6.31	7.4	6.1	7.53	15.07	11.59
Merged-chr3-33956377-2	chr3	33956239	33956439	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63740.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	4.04	3.27	0.57	6.03	2.45	3.76	3.99	5.41	13.77	4.02	5.02	5.64
Merged-chr8-70554023-1	chr8	70553923	70554123	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	14348.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.83	3.52	0.0	1.21	11.86	4.08	1.66	8.97	2.36	0.5	2.51	2.19
Merged-chr8-91312504-2	chr8	91312399	91312599	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173431, intron 1 of 25)	intron (NM_173431, intron 1 of 25)	723.0	NM_173431	244585.0	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	8.48	3.52	7.42	6.44	1.64	6.59	2.66	5.69	17.11	12.05	14.07	10.02
Merged-chr2-127142307-1	chr2	127142207	127142407	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355634, intron 1 of 2)	intron (NM_001355634, intron 1 of 2)	283.0	NM_001163528	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	4.44	3.02	9.13	0.8	10.23	7.21	5.65	11.16	3.93	7.03	8.54	6.27
Merged-chr15-66932538-1	chr15	66932438	66932638	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008681, intron 15 of 15)	intron (NM_008681, intron 15 of 15)	37103.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.81	1.01	13.69	0.8	2.45	5.96	7.97	10.51	2.95	1.51	3.01	4.07
Merged-chr4-40815340-3	chr4	40815241	40815441	+	785.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	34797.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	7.67	11.32	7.99	18.1	3.27	6.59	7.64	9.87	12.19	8.54	17.08	3.76
Merged-chr9-95574090-2	chr9	95573984	95574184	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14267.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.04	4.78	9.13	6.44	7.36	14.74	8.64	10.77	11.8	11.55	12.06	7.52
Merged-chr9-59547266-2	chr9	59547188	59547388	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	7748.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	3.63	5.03	6.85	4.83	4.09	7.21	9.3	8.19	12.19	2.01	11.05	3.76
Merged-chr6-84587730-3	chr6	84587599	84587799	+	785.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177713, intron 2 of 6)	CpG	6111.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	13.73	14.84	8.56	10.86	7.36	15.99	5.31	7.32	12.59	11.55	10.05	7.83
Merged-chr1-64318607-3	chr1	64318509	64318709	+	785.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-197220.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.67	7.29	17.11	15.69	7.77	16.62	6.64	14.5	11.21	11.55	13.06	8.14
Merged-chr13-37332873-3	chr13	37332768	37332968	+	785.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12477.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.23	5.28	7.42	2.82	3.68	6.59	4.65	10.37	11.6	4.02	11.05	6.58
Merged-chr14-25394836-3	chr14	25394783	25394983	+	785.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64302.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	11.31	9.31	7.42	3.22	15.55	15.05	11.96	8.13	15.74	11.55	7.54	4.7
Merged-chr3-135421216-2	chr3	135421123	135421323	+	785.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025902, intron 1 of 2)	ID_B1|SINE|B4	2210.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	5.25	2.01	5.13	2.41	9.0	3.76	10.3	12.31	11.01	5.02	28.14	6.58
Merged-chr1-131933681-2	chr1	131933580	131933780	+	785.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	23222.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	9.29	4.02	7.42	6.03	2.86	9.41	0.66	10.35	8.46	3.01	8.54	8.46
Merged-chr9-22226502-2	chr9	22226412	22226612	+	785.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028420, intron 1 of 4)	intron (NR_028420, intron 1 of 4)	800.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	2.02	5.28	10.84	5.63	6.14	9.09	6.64	3.08	16.72	14.06	18.09	10.34
Merged-chr14-56486670-3	chr14	56486580	56486780	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033043, intron 24 of 36)	intron (NM_001033043, intron 24 of 36)	83983.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	6.06	11.57	3.42	11.66	7.77	15.05	5.98	8.05	11.01	6.53	9.55	8.77
Merged-chr10-125270448-3	chr10	125270342	125270542	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	38374.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	11.31	7.29	19.97	13.67	19.23	13.48	7.97	16.88	9.64	9.04	9.04	13.47
Merged-chr5-122394105-3	chr5	122393999	122394199	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 1 of 6)	B3A|SINE|B2	2221.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	14.13	10.06	13.12	12.47	11.45	7.53	6.98	11.27	22.23	13.56	17.59	11.9
Merged-chr6-115987557-1	chr6	115987457	115987657	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	7448.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	14.13	14.34	9.13	0.0	5.73	12.86	5.31	2.27	6.69	6.03	12.06	4.39
Merged-chr10-67538785-3	chr10	67538662	67538862	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347458, intron 2 of 2)	CpG	832.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	9.69	8.55	10.84	6.44	2.45	4.7	9.3	5.13	11.41	7.53	2.51	9.08
Merged-chr11-97343798-2	chr11	97343696	97343896	+	785.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081220, exon 7 of 11)	exon (NM_001081220, exon 7 of 11)	8277.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	10.9	6.79	11.41	4.83	14.32	15.37	5.65	8.3	7.28	2.51	2.51	3.45
Merged-chr3-154510412-3	chr3	154510346	154510546	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86265.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	2.02	5.03	7.42	6.44	8.59	2.51	5.98	13.01	22.82	15.06	16.08	8.77
Merged-chr7-19927023-3	chr7	19926925	19927125	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5882.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	10.5	1.76	11.41	22.93	11.45	9.72	19.27	19.68	14.36	7.03	24.12	10.34
Merged-chr17-28756611-3	chr17	28756508	28756708	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12709.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	11.71	6.04	13.69	14.88	11.86	15.05	7.64	14.78	6.69	15.06	21.61	6.89
Merged-chr16-55892580-3	chr16	55892462	55892662	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 1 of 5)	intron (NM_001134457, intron 1 of 5)	2717.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	12.52	11.32	9.13	12.87	7.77	5.33	7.64	13.32	16.33	8.03	10.55	13.78
Merged-chr19-55642089-3	chr19	55641989	55642189	+	785.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	60115.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	9.69	7.29	11.41	11.66	9.82	10.98	6.64	7.91	13.57	11.55	9.04	5.01
Merged-chr2-60289637-2	chr2	60289534	60289734	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5150.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	9.69	7.29	15.4	13.67	18.41	12.23	10.3	15.93	17.31	6.03	5.02	6.58
Merged-chr8-119782905-3	chr8	119782798	119782998	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4482.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	16.15	9.31	18.25	5.23	6.55	9.72	8.64	8.05	15.93	15.06	13.57	10.34
Merged-chr7-24975426-3	chr7	24975304	24975504	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2676.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	13.33	8.05	4.56	6.84	14.73	12.23	4.65	6.48	8.46	8.03	13.57	11.9
Merged-chr6-5390361-2	chr6	5390278	5390478	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355662)	promoter-TSS (NM_001355662)	-32.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	5.65	7.29	9.7	2.41	9.41	8.78	13.29	12.39	10.42	6.53	2.51	3.45
Merged-chr18-67606281-3	chr18	67606199	67606399	+	785.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35056.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	8.88	10.31	10.84	11.66	13.5	9.09	6.64	7.85	12.98	12.05	10.55	6.58
Merged-chr4-45848268-3	chr4	45848177	45848377	+	785.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028788)	promoter-TSS (NM_028788)	-539.0	NM_001305421	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	18.98	9.06	12.55	8.45	8.59	22.26	9.63	14.61	9.05	5.52	9.55	12.84
Merged-chr2-168904357-3	chr2	168904253	168904453	+	785.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51234.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	4.44	4.78	7.42	4.02	12.68	7.53	0.33	7.46	12.59	7.53	8.04	12.53
Merged-chr1-9593930-3	chr1	9593828	9594028	+	785.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-7339.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	9.29	5.53	13.12	10.86	8.18	10.03	14.95	21.25	13.96	10.54	9.55	7.52
Merged-chr6-116694191-3	chr6	116694079	116694279	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-20343.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.67	7.04	11.98	6.44	13.5	6.59	5.31	9.93	18.88	11.05	27.13	16.92
Merged-chr4-135890032-3	chr4	135889923	135890123	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5166.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	11.31	5.28	9.7	3.22	4.91	9.41	4.65	8.1	12.39	5.52	12.56	2.19
Merged-chrX-78583846-3	chrX	78583710	78583910	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164275)	promoter-TSS (NM_001164275)	-5.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	8.48	5.53	3.99	10.05	10.64	5.96	10.96	11.33	9.44	11.05	13.06	5.01
Merged-chr7-104296865-1	chr7	104296765	104296965	+	785.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8759.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.75	1.14	0.0	0.82	2.2	0.0	0.73	14.16	9.54	18.59	9.08
Merged-chr6-121215189-3	chr6	121215082	121215282	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	4448.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	8.48	8.05	6.28	16.89	21.27	17.25	11.63	27.25	12.39	9.54	13.06	12.22
Merged-chr8-111745788-3	chr8	111745654	111745854	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	13.33	6.29	6.85	9.65	11.05	12.86	13.62	18.53	9.64	8.54	12.56	4.07
Merged-chr1-13427020-3	chr1	13426924	13427124	+	785.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-52941.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	6.06	4.53	7.99	6.84	13.5	13.17	4.32	11.52	11.8	11.55	15.07	8.46
Merged-chr3-96577442-3	chr3	96577340	96577540	+	785.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001293701)	TTS (NM_001293701)	-10639.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	14.54	6.29	11.41	9.25	11.45	6.9	8.3	12.31	12.78	13.05	16.08	10.65
Merged-chr9-104039160-2	chr9	104039053	104039253	+	785.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028721, intron 23 of 26)	intron (NM_028721, intron 23 of 26)	23968.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	8.08	3.52	6.85	3.22	13.09	5.33	7.97	11.64	10.62	8.54	17.08	9.4
Merged-chr6-100286703-3	chr6	100286599	100286799	+	785.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019743, intron 1 of 4)	CpG	659.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	11.71	11.32	14.83	14.48	8.59	10.66	12.62	10.4	6.69	20.08	15.58	7.52
Merged-chr18-68299336-2	chr18	68299236	68299436	+	785.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153794, intron 1 of 3)	intron (NM_153794, intron 1 of 3)	997.0	NM_153794	108654.0	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	8.48	9.56	6.85	8.04	2.45	8.47	6.31	7.93	14.55	6.53	16.58	7.83
Merged-chr11-97557148-3	chr11	97557037	97557237	+	785.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	17989.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	12.52	7.55	2.85	11.66	2.86	10.98	7.31	11.61	14.55	9.54	10.55	10.96
Merged-chr2-36276781-3	chr2	36276671	36276871	+	785.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46345.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	20.19	12.07	10.27	8.04	6.55	7.84	3.65	9.42	12.59	9.04	7.54	9.4
Merged-chr3-152149487-3	chr3	152149386	152149586	+	785.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	16414.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	9.69	8.3	13.69	9.65	20.05	10.35	18.93	21.22	10.42	13.05	8.54	6.27
Merged-chr11-46811587-3	chr11	46811379	46811579	+	785.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 1 of 8)	PB1D10|SINE|Alu	680.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.83	7.04	11.98	7.64	5.32	13.8	6.64	6.42	9.83	7.03	5.02	6.89
Merged-chr11-14449375-1	chr11	14449275	14449475	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	149850.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0.0	0.5	0.0	0.8	3.27	0.31	0.66	1.32	14.55	13.56	8.54	15.04
Merged-chr4-153878170-2	chr4	153878055	153878255	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	72321.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	6.86	6.79	1.14	2.41	18.41	11.29	14.95	10.01	6.88	6.03	11.05	3.45
Merged-chr5-102640801-1	chr5	102640701	102640901	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128009.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.5	0.0	4.83	5.32	3.14	7.31	6.03	3.54	12.05	12.56	7.83
Merged-chr17-5625754-1	chr17	5625654	5625854	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133154.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	1.62	0.5	1.14	0.8	11.05	1.88	2.33	4.29	7.08	7.03	6.03	3.76
Merged-chr1-16703071-1	chr1	16702971	16703171	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159711, intron 3 of 4)	intron (NM_001159711, intron 3 of 4)	14615.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.42	0.5	0.0	0.0	1.23	0.63	1.33	0.34	14.55	7.53	8.04	9.71
Merged-chr10-121484355-1	chr10	121484255	121484455	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8105.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.04	2.77	3.42	8.45	6.55	4.08	2.66	8.24	5.7	4.52	6.53	5.33
Merged-chr2-113444006-1	chr2	113443906	113444106	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 1 of 16)	intron (NM_001285459, intron 1 of 16)	2942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.83	3.52	3.99	6.44	4.91	0.63	8.64	9.14	8.06	2.01	1.0	3.13
Merged-chr5-134617337-1	chr5	134617237	134617437	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2312.0	NM_020044	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	2.42	2.77	2.28	8.85	8.18	4.7	6.64	8.66	4.92	2.51	4.02	4.7
Merged-chr1-9848251-1	chr1	9848151	9848351	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037759)	promoter-TSS (NM_001037759)	-30.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	5.65	1.76	1.14	5.63	8.59	1.88	4.65	5.36	2.56	4.02	4.52	3.13
Merged-chr5-115157755-1	chr5	115157655	115157855	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175403, intron 1 of 4)	CpG	421.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	10.09	11.32	5.13	6.84	9.0	10.03	9.63	7.26	12.78	9.54	11.56	11.59
Merged-chrX-13600142-3	chrX	13600042	13600242	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 10 of 26)	intron (NM_001284503, intron 10 of 26)	-32627.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	10.9	7.29	14.83	12.47	9.0	12.54	7.64	16.85	17.31	7.53	15.07	7.83
Merged-chr6-97155748-2	chr6	97155669	97155869	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081111, intron 16 of 16)	B1_Mus1|SINE|Alu	-6886.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	10.09	6.79	1.71	3.62	4.5	2.82	5.65	4.01	6.49	0.5	3.52	3.13
Merged-chr17-26511500-1	chr17	26511400	26511600	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3028.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.81	4.02	1.14	0.0	9.0	1.25	4.98	5.8	0.59	6.53	2.51	3.45
Merged-chr1-161139684-3	chr1	161139578	161139778	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3034.0	NM_028664	73844.0	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	14.13	6.29	5.7	7.24	16.77	9.72	6.98	14.44	50.16	36.15	45.73	24.75
Merged-chr18-7870752-1	chr18	7870652	7870852	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360956, intron 2 of 13)	PB1D7|SINE|Alu	1039.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	3.63	5.03	1.14	3.22	7.36	2.82	3.65	8.13	5.51	3.51	7.54	9.08
Merged-chr9-65202097-1	chr9	65201997	65202197	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12593.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	13.73	3.52	5.7	3.62	11.45	9.72	4.32	7.46	6.88	9.54	9.55	3.45
Merged-chr17-12314254-1	chr17	12314154	12314354	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	4406.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	3.77	0.0	4.02	0.0	0.63	7.97	5.72	8.65	2.01	3.52	3.45
Merged-chr8-11037620-1	chr8	11037520	11037720	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-29190.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	1.62	2.01	0.0	4.02	14.32	6.27	5.31	10.04	9.24	4.52	8.54	6.58
Merged-chr2-5507317-1	chr2	5507217	5507417	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	127927.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	1.21	1.51	3.42	6.84	11.45	6.9	8.3	7.68	18.88	4.52	3.01	2.51
Merged-chr3-136756262-3	chr3	136756162	136756362	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	86196.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	10.5	8.8	3.42	0.8	11.86	17.56	5.98	6.11	22.42	17.57	12.06	3.76
Merged-chr2-13270854-1	chr2	13270754	13270954	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009105, intron 2 of 8)	intron (NM_009105, intron 2 of 8)	561.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.44	8.8	3.42	4.42	9.41	7.84	10.96	5.64	8.65	8.54	7.03	9.71
Merged-chr8-36158231-1	chr8	36158131	36158331	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	2221.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	2.02	4.53	7.99	5.23	7.36	7.84	1.33	7.01	3.74	4.02	3.01	1.57
Merged-chr19-55862704-1	chr19	55862604	55862804	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-32617.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.02	1.26	0.0	1.21	3.68	6.27	2.99	7.29	4.13	2.01	4.02	7.52
Merged-chr3-101596932-1	chr3	101596832	101597032	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7775.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	2.42	2.77	2.85	1.61	3.27	2.82	5.31	8.61	3.54	4.52	2.01	4.07
Merged-chr16-24628638-1	chr16	24628538	24628738	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-93217.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.63	4.02	0.0	0.8	2.86	3.76	0.0	0.53	3.93	5.52	3.01	4.39
Merged-chr19-55868150-3	chr19	55868055	55868255	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-27166.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.88	5.79	21.11	16.49	18.41	15.68	25.24	19.09	4.13	5.02	15.07	7.52
Merged-chr1-193839034-1	chr1	193838934	193839134	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-331504.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	2.42	3.52	6.85	2.01	10.23	3.45	1.99	6.81	5.51	7.53	4.52	1.88
Merged-chr9-56258616-2	chr9	56258519	56258719	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97549.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	1.62	1.26	1.14	7.24	6.95	14.74	2.66	6.34	11.6	7.53	15.58	2.19
Merged-chr3-30508741-1	chr3	30508641	30508841	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361034, intron 1 of 16)	CpG	934.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	8.88	2.77	1.14	6.84	9.41	15.37	12.95	4.6	4.52	10.54	4.02	9.71
Merged-chr1-151619478-1	chr1	151619378	151619578	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	48105.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.81	1.01	3.42	3.22	11.86	2.2	2.33	6.87	5.31	3.51	4.52	5.01
Merged-chr8-117074754-1	chr8	117074654	117074854	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029686, intron 4 of 42)	intron (NM_029686, intron 4 of 42)	7695.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.81	4.53	6.28	3.22	6.14	2.51	1.99	10.85	8.46	2.51	9.04	3.76
Merged-chr3-95661039-1	chr3	95660939	95661139	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	2318.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	1.62	3.27	2.28	4.02	4.09	5.96	2.33	3.17	4.72	5.02	10.05	4.07
Merged-chr11-45944400-3	chr11	45944320	45944520	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290737)	TTS (NM_001290737)	515.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	10.09	13.08	11.41	2.41	8.59	8.78	10.63	7.93	7.47	11.05	11.56	10.02
Merged-chr9-22229705-1	chr9	22229605	22229805	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028420, intron 1 of 4)	MERV1_LTR|LTR|ERV1	3993.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	4.85	5.79	15.4	5.63	2.45	0.94	8.3	4.18	10.82	2.51	3.52	10.65
Merged-chr7-19269121-1	chr7	19269021	19269221	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	MIR|SINE|MIR	2733.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.25	9.06	1.71	4.83	6.14	13.17	4.65	4.57	12.19	14.56	13.57	5.01
Merged-chr12-77239529-1	chr12	77239429	77239629	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045554, intron 1 of 11)	CpG	790.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	10.9	6.29	3.42	8.85	2.86	5.02	4.98	4.79	11.01	9.54	11.56	6.89
Merged-chr17-46347370-2	chr17	46347283	46347483	+	784.983337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19360.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	8.08	5.53	7.42	2.41	10.23	10.98	9.97	8.36	11.21	9.04	11.56	6.89
Merged-chr3-9407198-3	chr3	9407110	9407310	+	784.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015499, intron 1 of 1)	intron (NR_015499, intron 1 of 1)	4132.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	9.69	2.01	10.84	6.84	5.73	5.64	5.31	20.58	11.41	14.06	19.09	19.42
Merged-chr14-30746469-2	chr14	30746420	30746620	+	784.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	30905.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.04	8.3	2.28	10.46	11.05	4.7	15.61	15.0	6.49	4.02	4.02	7.21
Merged-chr2-60285358-3	chr2	60285250	60285450	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-866.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	15.75	11.57	12.55	13.27	9.41	5.64	12.29	16.29	9.05	7.53	5.53	7.21
Merged-chr3-139099480-3	chr3	139099403	139099603	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24302.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	9.69	14.59	5.13	16.09	2.86	5.96	5.65	7.15	9.83	12.05	13.57	9.4
Merged-chr6-31233455-3	chr6	31233351	31233551	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040260, intron 1 of 5)	L3|LINE|CR1	13100.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	8.48	10.06	10.27	9.65	9.0	5.96	7.64	13.6	18.1	11.55	9.04	5.64
Merged-chr3-129532333-3	chr3	129532233	129532433	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130450)	promoter-TSS (NM_130450)	-53.0	NM_130450	170439.0	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	9.29	6.04	12.55	6.84	20.46	11.92	10.96	14.5	10.03	13.05	10.55	5.64
Merged-chr9-57473510-4	chr9	57473395	57473595	+	784.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5435.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	3.63	4.28	6.85	2.82	2.45	7.53	6.98	4.26	3.74	4.52	6.03	5.95
Merged-chr3-104781704-3	chr3	104781566	104781766	+	784.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027982, intron 1 of 9)	CpG	610.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	8.88	11.07	3.42	8.85	10.23	5.02	7.31	9.42	12.78	11.55	8.54	8.77
Merged-chr18-38003412-2	chr18	38003305	38003505	+	784.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4436.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	5.25	4.02	14.26	8.04	12.68	9.09	3.65	11.72	10.03	12.05	12.56	7.21
Merged-chr5-105701583-2	chr5	105701452	105701652	+	784.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	742.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.46	4.78	6.85	9.65	14.73	11.29	10.96	5.66	9.05	19.58	7.54	9.4
Merged-chrX-48153480-2	chrX	48153385	48153585	+	784.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313749, intron 1 of 7)	intron (NM_001313749, intron 1 of 7)	7049.0	NM_028773	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	5.25	5.28	15.4	10.46	10.23	10.35	5.65	19.09	3.74	5.52	5.53	8.46
Merged-chr2-168478090-2	chr2	168477993	168478193	+	784.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001136073, exon 11 of 11)	3' UTR (NM_001136073, exon 11 of 11)	112272.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.25	7.55	18.25	10.05	18.41	19.13	9.97	16.65	0.39	0.0	0.0	0.63
Merged-chr5-62844648-2	chr5	62844558	62844758	+	784.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	30835.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	8.88	9.31	5.7	4.42	13.5	25.71	7.64	3.81	10.42	5.02	6.03	0.63
Merged-chr18-24208142-2	chr18	24208033	24208233	+	784.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	B1F1|SINE|Alu	2139.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	2.83	1.26	13.12	2.01	4.09	7.53	8.64	11.38	5.7	13.05	6.03	10.02
Merged-chr2-91921978-3	chr2	91921899	91922099	+	784.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-190.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	7.27	6.54	3.99	14.08	7.36	13.17	12.95	6.03	16.72	10.54	22.61	18.8
Merged-chr11-48823812-3	chr11	48823707	48823907	+	784.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2331.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	6.46	6.54	5.13	9.65	9.0	5.33	4.32	10.21	14.95	7.03	13.57	3.45
Merged-chr18-62176882-8	chr18	62176726	62176926	+	784.814575	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007420)	TTS (NM_007420)	3155.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	15.34	6.79	5.7	7.24	18.0	10.66	2.99	5.69	10.23	9.04	7.54	4.39
Merged-chr2-91441869-3	chr2	91441774	91441974	+	784.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 1 of 8)	intron (NM_175123, intron 1 of 8)	2840.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	9.29	10.82	11.98	11.26	15.14	6.59	12.29	15.34	9.24	9.54	19.6	6.89
Merged-chr9-64925934-3	chr9	64925823	64926023	+	784.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144813, intron 9 of 9)	intron (NM_144813, intron 9 of 9)	25684.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	13.33	9.81	19.4	12.07	5.73	9.41	6.64	11.41	9.05	7.53	8.04	4.39
Merged-chr19-55828022-2	chr19	55827903	55828103	+	784.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-67318.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	14.13	5.28	4.56	7.24	8.18	6.59	7.97	7.88	8.26	2.51	8.54	5.33
Merged-chr15-84853970-1	chr15	84853870	84854070	+	784.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	CpG	1129.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	9.69	5.53	3.42	4.83	4.09	2.2	1.66	6.34	13.37	15.57	20.1	10.02
Merged-chr7-19221566-2	chr7	19221455	19221655	+	784.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175668, exon 2 of 2)	5' UTR (NM_175668, exon 2 of 2)	-6834.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	22.61	10.31	14.26	8.85	15.96	18.5	3.65	4.37	9.44	6.53	3.01	3.76
Merged-chr13-34233144-1	chr13	34233044	34233244	+	784.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70180.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.02	3.77	6.85	2.01	10.23	11.6	9.97	7.96	9.83	4.02	5.53	5.01
Merged-chr14-41006431-3	chr14	41006349	41006549	+	784.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316732, intron 1 of 6)	intron (NM_001316732, intron 1 of 6)	471.0	NM_001316739	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	10.09	6.29	14.26	9.65	15.55	9.41	1.99	13.49	15.34	9.54	17.08	6.89
Merged-chr13-55696191-1	chr13	55696091	55696291	+	784.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181278, intron 1 of 1)	B4A|SINE|B4	3067.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	4.04	3.27	1.71	2.82	2.45	5.02	1.99	1.01	12.59	15.57	13.06	7.52
Merged-chr9-106886310-3	chr9	106886250	106886450	+	784.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	650.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	8.88	11.07	14.83	6.84	2.86	8.47	4.32	7.32	12.39	10.54	9.55	10.65
Merged-chr10-120363618-1	chr10	120363518	120363718	+	784.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010441, exon 5 of 5)	3' UTR (NM_010441, exon 5 of 5)	-25905.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	2.42	2.52	3.42	4.83	9.0	6.9	5.98	9.62	8.06	3.51	5.02	1.88
Merged-chr7-109629000-3	chr7	109628909	109629109	+	784.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11862.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	7.27	11.07	34.8	23.73	8.18	9.72	8.97	9.84	16.52	7.53	18.59	9.08
Merged-chr13-113421689-3	chr13	113421591	113421791	+	784.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81153.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	12.92	6.04	5.7	7.64	13.5	10.03	3.32	9.5	23.41	9.04	15.07	13.16
Merged-chr12-55385105-3	chr12	55385013	55385213	+	784.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	891.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	12.11	8.8	15.97	9.25	6.14	9.41	9.63	9.2	14.36	14.06	6.03	12.22
Merged-chr15-93336400-3	chr15	93336318	93336518	+	784.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028315, exon 2 of 5)	non-coding (NR_028315, exon 2 of 5)	517.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	11.31	9.06	3.42	11.26	11.86	19.44	15.61	13.91	13.37	15.57	18.59	8.14
Merged-chr11-110464077-3	chr11	110463971	110464171	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	MTE2a|LTR|ERVL-MaLR	-14444.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.06	8.05	5.7	10.46	7.36	9.72	5.98	6.98	13.37	14.06	28.14	6.89
Merged-chr1-84318799-3	chr1	84318698	84318898	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	12.52	7.8	3.42	9.65	15.14	8.47	4.65	14.3	7.67	8.03	11.05	15.66
Merged-chrX-37127226-1	chrX	37127126	37127326	+	784.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025937, exon 1 of 9)	exon (NM_025937, exon 1 of 9)	463.0	NM_025937	67050.0	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	4.04	2.52	1.14	6.03	10.64	7.84	2.33	8.66	5.7	1.51	5.53	4.7
Merged-chr9-95180675-3	chr9	95180571	95180771	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	226599.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	16.15	14.34	9.13	10.05	10.64	15.05	4.98	13.71	9.05	2.01	4.02	6.27
Merged-chr2-131079091-3	chr2	131079008	131079208	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011426, intron 8 of 20)	intron (NM_011426, intron 8 of 20)	7657.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	2.02	6.04	12.55	8.45	3.27	16.31	13.62	14.13	11.8	4.52	13.06	7.21
Merged-chr5-138158062-2	chr5	138157965	138158165	+	784.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2321.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	6.06	5.28	0.57	7.24	5.32	5.02	12.95	10.57	11.41	6.53	11.05	8.46
Merged-chr7-30683620-1	chr7	30683520	30683720	+	784.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12015.0	NR_027848	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	7.27	4.28	7.99	5.63	6.55	6.9	6.64	9.53	9.44	1.51	15.58	5.95
Merged-chr17-50149908-2	chr17	50149798	50149998	+	784.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40599.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.04	6.04	2.28	1.21	9.82	8.15	2.99	8.61	12.39	7.03	14.07	7.83
Merged-chr5-32085765-3	chr5	32085670	32085870	+	784.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50702.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	8.08	4.78	10.84	20.51	12.68	8.78	11.96	16.91	13.37	13.56	14.07	12.53
Merged-chr17-55963337-3	chr17	55963233	55963433	+	784.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3932.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	12.52	17.1	22.82	8.04	7.77	7.84	3.65	7.04	19.87	11.55	17.59	12.84
Merged-chr3-133754404-2	chr3	133754284	133754484	+	784.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-209994.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	7.27	5.79	9.7	9.25	8.59	7.21	5.98	7.71	4.13	3.01	5.02	5.95
Merged-chr1-132794656-3	chr1	132794571	132794771	+	784.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52874.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	5.65	4.78	18.25	16.49	10.64	6.9	8.97	15.28	7.28	3.01	15.07	9.4
Merged-chr14-47513868-3	chr14	47513758	47513958	+	784.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	41297.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	6.46	6.29	10.27	14.48	9.41	5.64	16.28	13.85	16.92	19.08	17.59	10.34
Merged-chr2-26119812-3	chr2	26119715	26119915	+	784.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	2996.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	10.9	9.81	7.99	0.8	15.14	9.09	2.99	10.46	13.18	9.04	16.08	5.33
Merged-chr16-20309691-2	chr16	20309575	20309775	+	784.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183158, exon 9 of 9)	3' UTR (NM_183158, exon 9 of 9)	-7313.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	2.42	8.05	3.42	7.64	7.36	8.78	7.97	8.07	14.75	6.03	12.06	9.71
Merged-chr4-59853385-2	chr4	59853315	59853515	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	L2a|LINE|L2	47765.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	8.08	5.03	12.55	5.23	8.18	8.78	3.99	7.12	9.64	6.53	19.09	8.14
Merged-chr17-70993608-3	chr17	70993492	70993692	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357820)	TTS (NM_001357820)	-3076.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	12.92	9.06	13.12	6.44	18.41	24.15	11.96	10.49	10.82	7.03	8.54	3.76
Merged-chr5-72822612-1	chr5	72822512	72822712	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	45836.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	2.02	2.52	0.57	1.61	11.45	3.76	5.98	7.23	3.34	9.54	2.01	0.31
Merged-chr12-82367002-1	chr12	82366902	82367102	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 7 of 23)	intron (NM_001167983, intron 7 of 23)	55653.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.25	3.27	4.56	5.63	5.32	9.72	6.64	9.06	10.82	2.51	10.55	5.64
Merged-chr2-73160968-2	chr2	73160872	73161072	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030091, intron 4 of 7)	ORR1D2|LTR|ERVL-MaLR	53475.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	1.21	4.28	8.56	7.64	6.95	11.6	8.3	14.78	1.57	4.02	7.54	5.95
Merged-chr10-75781040-2	chr10	75780940	75781140	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	374.0	NM_133994	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	4.44	9.56	6.85	10.05	19.64	17.87	12.29	14.94	7.08	8.03	24.12	8.46
Merged-chr6-92989325-1	chr6	92989225	92989425	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48743.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.62	1.51	1.14	0.0	6.95	3.45	2.99	9.53	0.0	0.0	0.0	4.7
Merged-chr4-120589987-1	chr4	120589887	120590087	+	784.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	1242.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	4.04	4.02	2.28	5.63	1.64	2.82	1.33	1.18	11.8	6.53	15.58	7.21
Merged-chr4-128769749-3	chr4	128769646	128769846	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001009819)	TTS (NM_001009819)	10488.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	4.85	7.55	7.42	9.25	5.73	10.03	7.31	6.56	16.13	14.56	9.55	1.88
Merged-chr13-56354020-1	chr13	56353920	56354120	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8880.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	6.86	3.77	8.56	12.87	5.73	4.39	12.62	12.62	0.79	5.02	0.5	4.39
Merged-chr15-38567586-2	chr15	38567485	38567685	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045757, intron 2 of 2)	intron (NR_045757, intron 2 of 2)	27349.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	7.67	2.77	8.56	11.26	3.27	5.02	10.3	9.39	5.7	1.0	6.53	1.57
Merged-chr17-33818229-2	chr17	33818129	33818329	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6333.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	12.92	7.29	6.85	13.67	13.91	6.9	11.29	14.13	8.06	9.04	10.05	9.4
Merged-chr1-50804944-2	chr1	50804849	50805049	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122574.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	7.67	4.53	2.28	4.42	4.91	2.51	7.31	10.01	8.26	11.05	11.05	6.27
Merged-chr7-125597251-1	chr7	125597151	125597351	+	784.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6178.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.44	8.05	4.56	7.24	2.86	0.63	1.33	0.73	18.69	18.08	12.06	2.51
Merged-chr5-41550081-1	chr5	41549981	41550181	+	784.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	157610.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.81	1.51	3.99	3.22	0.0	0.94	3.65	3.5	5.51	9.04	16.58	13.78
Merged-chr17-31108580-2	chr17	31108481	31108681	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 9 of 14)	intron (NM_009593, intron 9 of 14)	21030.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.02	0.5	3.42	1.61	9.0	4.39	2.33	14.86	8.06	11.05	12.06	3.76
Merged-chr11-83639906-2	chr11	83639772	83639972	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9506.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	4.85	2.77	1.71	4.83	10.23	8.47	7.31	2.41	12.39	11.55	4.52	3.76
Merged-chr11-107478649-2	chr11	107478515	107478715	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-913.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.04	6.79	11.41	2.01	5.32	8.47	3.99	5.27	5.9	12.05	9.55	2.51
Merged-chr2-129221269-3	chr2	129221173	129221373	+	784.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045838, intron 1 of 4)	intron (NR_045838, intron 1 of 4)	2304.0	NR_045838	329513.0	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	10.09	9.31	14.83	10.86	10.23	20.38	11.29	7.09	14.36	10.54	11.05	14.1
Merged-chr3-149281549-3	chr3	149281437	149281637	+	784.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6800.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	9.69	7.29	11.98	13.67	11.45	12.54	14.95	17.94	10.62	11.05	10.55	8.14
Merged-chr7-143295780-3	chr7	143295626	143295826	+	784.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	821.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	6.86	4.53	7.42	8.45	11.45	13.17	7.97	5.58	11.6	10.54	9.55	8.46
Merged-chr18-11860563-3	chr18	11860448	11860648	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-20110.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	10.9	5.03	14.83	14.48	11.45	16.62	8.64	17.72	10.82	8.54	25.63	10.34
Merged-chr2-120564676-3	chr2	120564599	120564799	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	-840.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	12.92	8.55	7.99	7.64	7.77	19.13	6.98	7.04	17.7	13.56	17.08	9.08
Merged-chr2-153115872-3	chr2	153115769	153115969	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	7401.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	12.52	5.53	18.83	17.7	6.14	4.39	10.63	10.91	8.26	8.03	11.05	6.58
Merged-chr6-51919170-3	chr6	51919059	51919259	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	93390.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	8.48	11.57	15.97	8.04	3.68	9.09	2.33	3.81	14.75	19.58	14.57	12.22
Merged-chr9-64744064-3	chr9	64743971	64744171	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6315.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	9.69	5.03	13.12	12.47	17.18	12.86	9.97	3.95	4.72	15.57	13.06	6.58
Merged-chr10-81086786-2	chr10	81086693	81086893	+	784.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	12079.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	7.27	5.53	7.99	9.65	14.73	7.53	2.66	11.72	9.24	7.03	14.07	11.9
Merged-chr3-59235027-2	chr3	59234917	59235117	+	784.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 18 of 43)	intron (NM_177855, intron 18 of 43)	-24135.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	12.92	13.33	10.84	14.48	6.14	7.53	3.99	9.03	6.1	3.01	3.01	1.88
Merged-chr15-38651670-3	chr15	38651570	38651770	+	784.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-10234.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	12.92	6.79	3.42	12.07	14.73	8.47	5.31	13.6	17.11	14.06	22.61	14.1
Merged-chr15-81106388-2	chr15	81106291	81106491	+	784.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-1344.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.65	2.26	3.42	8.85	13.91	8.47	18.6	21.62	15.74	5.02	5.53	4.07
Merged-chr8-77506713-2	chr8	77506615	77506815	+	784.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-10341.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.46	9.06	18.25	14.48	6.55	5.33	6.64	14.75	14.16	7.53	8.54	5.01
Merged-chr18-80194086-1	chr18	80193986	80194186	+	784.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_131039)	TTS (NR_131039)	6533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	5.65	1.76	3.42	3.22	8.18	10.03	4.32	7.96	1.77	8.54	6.03	0.94
Merged-chr1-24461216-3	chr1	24461120	24461320	+	784.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 12 of 50)	intron (NM_007733, intron 12 of 50)	126217.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	6.06	7.29	10.84	7.24	9.82	2.51	13.29	11.19	15.14	11.55	9.55	2.82
Merged-chr11-60211049-1	chr11	60210949	60211149	+	784.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-578.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	4.04	4.53	10.84	5.63	4.5	7.21	5.31	8.13	4.13	12.55	3.52	6.27
Merged-chr13-54057103-1	chr13	54057003	54057203	+	784.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1445.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0.0	1.51	1.14	1.21	0.0	0.0	1.99	0.59	16.92	11.05	11.05	4.7
Merged-chr6-43349178-2	chr6	43349039	43349239	+	784.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	Lx8|LINE|L1	-39585.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	9.69	0.5	5.7	9.25	9.0	8.78	8.64	14.61	7.47	4.02	12.06	3.45
Merged-chr7-67484941-3	chr7	67484844	67485044	+	784.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112086.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.04	7.29	10.84	8.85	5.73	9.41	11.96	20.3	11.21	19.58	19.09	11.9
Merged-chr13-42331322-2	chr13	42331229	42331429	+	784.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29853.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	9.29	5.53	10.84	7.64	8.59	6.9	3.65	5.78	14.95	15.06	24.12	7.52
Merged-chr13-101840035-2	chr13	101839943	101840143	+	784.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71826.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.86	3.52	3.42	18.1	7.36	7.84	28.23	20.24	15.93	8.03	33.67	9.4
Merged-chr8-124912118-3	chr8	124912032	124912232	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14246.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	23.42	11.07	9.7	21.32	32.73	23.2	23.25	30.59	10.03	9.54	13.06	14.41
Merged-chr8-46136527-1	chr8	46136427	46136627	+	784.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-12381.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.25	5.03	4.56	5.23	6.14	12.86	7.64	8.47	5.7	3.01	11.56	4.07
Merged-chr15-40048008-2	chr15	40047925	40048125	+	784.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155348, intron 1 of 2)	intron (NR_155348, intron 1 of 2)	2837.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	2.83	6.04	15.4	6.84	9.82	8.15	12.62	20.72	10.03	10.04	15.58	15.66
Merged-chr16-11053997-2	chr16	11053905	11054105	+	784.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12293.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.23	5.03	10.84	6.84	6.95	5.33	15.61	10.77	6.29	4.52	14.07	5.33
Merged-chr5-149286158-2	chr5	149286072	149286272	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	21168.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	10.5	9.56	2.28	3.22	8.18	3.45	5.31	10.23	8.26	4.52	8.54	3.45
Merged-chr10-120231883-3	chr10	120231781	120231981	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025431, exon 3 of 3)	3' UTR (NM_025431, exon 3 of 3)	4821.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	7.67	7.29	5.13	3.22	6.14	11.6	10.3	9.17	10.42	10.04	14.57	6.58
Merged-chr14-55737560-4	chr14	55737532	55737732	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8052.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.06	3.27	6.28	10.46	7.77	5.96	9.3	15.48	6.69	4.52	14.07	9.71
Merged-chrX-155606235-2	chrX	155606125	155606325	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001093750, intron 1 of 2)	intron (NM_001093750, intron 1 of 2)	17102.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	12.11	10.56	11.41	6.03	9.0	5.33	3.99	9.56	0.79	3.01	3.52	0.63
Merged-chr10-37140291-4	chr10	37140245	37140445	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1419.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	8.08	5.79	6.85	6.84	2.86	5.64	2.66	5.33	12.59	6.53	6.53	3.45
Merged-chr1-167517909-3	chr1	167517861	167518061	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51181.0	NM_001013382	240899.0	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	6.46	8.3	9.13	3.62	31.91	34.49	38.2	34.32	9.64	6.53	15.58	11.28
Merged-chr13-100317514-3	chr13	100317420	100317620	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010871)	promoter-TSS (NM_010871)	168.0	NM_021545	53880.0	Mm.218759	NM_021545		Naip7	Birc1g|Naip-rs4B|Naip6	NLR family, apoptosis inhibitory protein 7	protein-coding	9.69	10.56	23.96	14.88	13.09	9.72	9.63	15.59	4.72	9.54	18.59	9.4
Merged-chr6-116186696-3	chr6	116186600	116186800	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	6674.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.46	6.54	14.26	10.05	4.5	12.54	4.32	8.19	16.92	5.52	16.08	7.52
Merged-chr4-141514447-3	chr4	141514355	141514555	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	24142.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	12.92	7.8	11.41	8.85	11.45	10.98	3.99	7.12	28.13	25.11	12.06	28.82
Merged-chr3-50439029-3	chr3	50438937	50439137	+	784.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011990, intron 1 of 11)	intron (NM_011990, intron 1 of 11)	4576.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	8.88	9.31	9.13	15.28	15.96	11.29	15.61	20.33	9.44	10.04	14.57	9.08
Merged-chr2-120544945-3	chr2	120544868	120545068	+	784.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 3 of 21)	Lx7|LINE|L1	18891.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	7.27	3.27	14.26	10.46	22.91	8.78	8.3	22.74	12.98	9.54	12.56	13.16
Merged-chr18-67500747-1	chr18	67500647	67500847	+	784.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176832, intron 9 of 13)	intron (NM_176832, intron 9 of 13)	35898.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	1.62	2.52	1.71	0.8	7.36	8.15	7.97	10.68	2.56	4.52	0.5	3.13
Merged-chr3-98051904-2	chr3	98051792	98051992	+	784.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	38354.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	10.5	9.31	7.42	12.87	9.0	12.86	6.64	15.67	3.74	6.03	4.52	5.95
Merged-chr7-129526192-1	chr7	129526092	129526292	+	784.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65671.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	4.85	3.52	11.41	8.85	11.05	10.03	19.27	7.07	11.21	11.05	7.03	2.51
Merged-chr19-32112037-3	chr19	32111923	32112123	+	784.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8883.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	4.44	6.54	9.7	12.87	13.09	6.9	3.99	7.71	11.41	11.05	14.07	5.64
Merged-chr10-24131667-3	chr10	24131575	24131775	+	784.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17614.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	10.09	12.32	9.13	6.03	25.36	19.44	11.63	24.56	15.93	14.56	18.59	6.27
Merged-chr12-69458151-2	chr12	69458039	69458239	+	784.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17411.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.06	3.02	5.13	3.22	10.23	9.72	4.98	5.78	10.03	7.53	9.04	8.14
Merged-chr10-98948262-2	chr10	98948165	98948365	+	784.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	33113.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	4.02	7.99	8.45	20.86	21.32	26.91	24.73	7.08	6.53	9.55	6.58
Merged-chr1-87632315-2	chr1	87632205	87632405	+	784.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	L1M5|LINE|L1	11993.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	10.09	8.3	3.99	8.04	4.91	10.66	4.65	10.6	6.29	5.52	7.03	9.71
Merged-chr9-48821635-3	chr9	48821551	48821751	+	784.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	14294.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	6.86	4.53	13.69	7.64	7.36	10.98	23.25	20.5	10.42	7.53	20.1	15.35
Merged-chr9-106428835-3	chr9	106428729	106428929	+	784.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	-582.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	10.09	10.31	9.13	3.22	2.45	13.17	2.33	9.59	57.04	53.22	33.67	23.81
Merged-chr17-74601377-3	chr17	74601294	74601494	+	784.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 19 of 72)	intron (NM_007566, intron 19 of 72)	73099.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	9.69	2.77	10.27	14.48	6.55	5.33	7.97	17.94	13.96	8.54	17.59	11.9
Merged-chr18-44714653-2	chr18	44714542	44714742	+	784.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-52376.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.02	7.55	12.55	5.63	14.73	14.74	8.97	10.91	1.57	0.0	1.51	2.51
Merged-chr3-92081144-4	chr3	92081029	92081229	+	784.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008508, exon 2 of 2)	exon (NM_008508, exon 2 of 2)	2013.0	NM_008508	16939.0	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	9.69	9.31	4.56	12.87	4.91	3.45	1.99	11.19	7.67	6.03	10.55	8.46
Merged-chr1-163899812-3	chr1	163899700	163899900	+	784.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-29300.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	8.48	8.8	11.41	17.7	6.55	21.32	10.96	24.79	23.01	10.04	20.6	8.14
Merged-chr16-77329314-3	chr16	77329232	77329432	+	784.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015543)	promoter-TSS (NR_015543)	4.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	14.54	16.35	14.26	16.09	6.95	7.21	11.29	7.99	9.83	10.04	5.02	10.02
Merged-chr12-73606083-3	chr12	73605999	73606199	+	784.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	MTD|LTR|ERVL-MaLR	21303.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	11.71	20.88	11.41	5.63	8.59	15.68	10.96	8.69	14.16	9.54	17.59	12.53
Merged-chr2-181918756-3	chr2	181918658	181918858	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54398.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	6.46	6.04	8.56	10.05	18.41	12.23	29.23	21.98	6.49	4.52	6.53	10.02
Merged-chr13-19841296-3	chr13	19841198	19841398	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17041.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	14.94	8.8	15.97	15.28	9.41	12.23	5.65	11.64	8.46	10.04	4.52	8.14
Merged-chr8-83783323-3	chr8	83783203	83783403	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41992.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.27	7.04	9.13	9.25	18.0	22.26	3.32	9.22	12.78	13.05	12.06	4.7
Merged-chr5-43883122-3	chr5	43883020	43883220	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	14311.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	15.75	13.33	12.55	19.71	18.82	11.6	3.99	20.55	9.64	14.56	12.56	7.83
Merged-chr11-54957161-3	chr11	54957057	54957257	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	5783.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	12.52	9.06	3.99	10.46	16.77	8.78	8.64	12.79	16.33	11.05	11.56	2.51
Merged-chr9-42138520-1	chr9	42138420	42138620	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14223.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	4.04	1.76	1.71	3.22	1.23	1.88	4.98	7.23	5.7	4.02	5.53	3.13
Merged-chr19-32762646-2	chr19	32762528	32762728	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	5051.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.85	7.04	7.42	7.64	6.55	3.76	5.31	9.48	3.74	4.02	15.07	13.78
Merged-chr3-149173751-1	chr3	149173651	149173851	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100986.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.44	7.04	0.57	3.62	8.18	2.2	1.33	7.43	2.75	7.03	4.52	1.57
Merged-chr18-74913907-1	chr18	74913807	74914007	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	47356.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	0.5	0.0	0.8	5.32	9.41	2.66	7.57	5.9	8.03	8.54	3.13
Merged-chr10-67288042-1	chr10	67287942	67288142	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.02	2.52	2.85	0.4	4.91	3.76	5.31	7.79	4.33	1.51	3.01	5.33
Merged-chr3-64204965-1	chr3	64204865	64205065	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-67485.0	NM_001104592	100125586.0	Mm.469888	NM_001104592	ENSMUSG00000043897	Vmn2r2	-	vomeronasal 2, receptor 2	protein-coding	5.65	0.5	2.28	1.61	5.73	9.09	6.64	7.51	5.9	7.53	6.53	7.21
Merged-chr12-110698818-1	chr12	110698718	110698918	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2423.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.81	2.26	1.71	0.0	0.82	5.64	1.66	4.26	4.72	6.03	2.51	6.89
Merged-chr14-27178719-1	chr14	27178619	27178819	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34726.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.83	1.51	1.14	6.44	9.82	12.54	6.98	12.81	3.93	0.0	4.02	2.19
Merged-chr18-89197247-1	chr18	89197147	89197347	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178687)	promoter-TSS (NM_178687)	-180.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	2.42	3.52	5.13	10.86	6.95	4.39	1.66	5.89	7.87	2.01	6.03	3.13
Merged-chr2-103439863-1	chr2	103439763	103439963	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010125, intron 3 of 6)	intron (NM_010125, intron 3 of 6)	15795.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	1.62	7.8	1.14	6.44	2.45	10.35	1.66	5.55	10.03	3.01	7.03	6.89
Merged-chr5-12206647-1	chr5	12206547	12206747	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-176519.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	2.42	2.52	6.28	0.8	7.77	2.51	4.98	7.49	4.52	6.03	6.53	1.25
Merged-chr17-45801439-1	chr17	45801339	45801539	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66933.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	1.62	1.01	2.28	0.0	12.68	1.57	5.31	8.72	2.16	0.5	0.0	0.94
Merged-chr10-111050446-1	chr10	111050346	111050546	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-40380.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.81	4.78	1.14	7.24	5.73	5.33	5.65	5.72	1.38	2.01	5.53	1.25
Merged-chr16-49504030-2	chr16	49503904	49504104	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-195290.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	3.63	3.52	3.42	5.63	11.86	5.02	4.32	2.72	11.41	8.03	9.04	9.71
Merged-chr2-45840596-1	chr2	45840496	45840696	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	143991.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.46	0.75	4.56	4.83	6.14	5.02	5.98	7.43	6.1	8.54	14.07	5.64
Merged-chr1-79768389-1	chr1	79768289	79768489	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6620.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	4.44	1.76	1.71	4.83	5.32	1.57	5.65	6.81	5.11	3.01	7.03	6.27
Merged-chr11-4422268-1	chr11	4422168	4422368	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029458, intron 5 of 10)	intron (NM_029458, intron 5 of 10)	18814.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	12.11	3.02	8.56	5.63	9.0	14.11	4.32	6.93	3.74	11.05	10.05	8.77
Merged-chr16-16565936-1	chr16	16565836	16566036	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	MTD|LTR|ERVL-MaLR	-5717.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	1.62	2.01	3.99	4.42	8.18	4.39	2.66	9.59	2.95	4.02	16.58	0.94
Merged-chr4-141713827-3	chr4	141713710	141713910	+	784.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017966, intron 1 of 9)	RLTR30D2_MM|LTR|ERV1	9609.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	17.36	14.59	5.13	12.47	18.0	23.2	18.6	16.57	14.55	3.51	10.55	4.7
Merged-chrY-90805101-1	chrY	90805001	90805201	+	784.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	L1_Mm|LINE|L1	19659.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	2.83	0.0	1.14	0.8	3.27	2.51	1.99	1.49	13.57	7.53	12.06	7.52
Merged-chr2-119263117-1	chr2	119263017	119263217	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8109.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	2.83	3.27	4.56	0.0	5.73	3.76	4.98	6.9	1.57	2.01	1.51	4.07
Merged-chr13-25007411-1	chr13	25007311	25007511	+	784.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001013389, intron 2 of 10)	IAPEY4_LTR|LTR|ERVK	12906.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	5.25	9.56	15.97	2.41	9.0	5.64	3.99	3.08	3.15	7.53	11.56	14.41
Merged-chr6-17754610-1	chr6	17754510	17754710	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	5440.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.44	3.52	8.56	4.02	8.59	3.76	8.3	7.96	6.1	2.51	8.04	5.33
Merged-chr13-22021067-1	chr13	22020967	22021167	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11326.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	7.67	10.82	3.42	8.04	1.23	3.76	9.3	4.85	2.56	0.0	1.0	0.31
Merged-chr6-54955765-3	chr6	54955654	54955854	+	783.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15907.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	12.52	12.58	19.97	9.65	13.09	16.31	8.3	18.17	11.41	5.52	11.56	5.33
Merged-chr13-3776642-3	chr13	3776541	3776741	+	783.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	27677.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	9.29	9.81	29.66	20.91	7.77	9.09	9.63	11.16	9.83	8.54	13.57	10.96
Merged-chr11-65784553-3	chr11	65784442	65784642	+	783.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	3817.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	5.65	15.09	5.7	8.85	15.14	13.17	4.32	10.01	12.0	12.55	21.61	15.66
Merged-chr7-84594634-3	chr7	84594525	84594725	+	783.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010176, intron 9 of 13)	intron (NM_010176, intron 9 of 13)	11317.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	9.69	7.29	11.98	11.26	13.5	7.84	5.98	12.5	10.62	11.55	23.11	12.22
Merged-chr12-102501239-3	chr12	102501136	102501336	+	783.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31326.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	19.38	11.07	13.69	23.33	20.86	20.07	9.3	21.5	7.67	6.03	10.05	1.88
Merged-chr14-30548267-5	chr14	30548238	30548438	+	783.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009388)	promoter-TSS (NM_009388)	-793.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	3.23	6.04	5.13	4.42	1.64	3.45	3.65	4.71	8.46	6.03	4.52	11.9
Merged-chr11-119053415-3	chr11	119053317	119053517	+	783.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12504.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	7.27	11.07	9.7	16.89	20.05	13.17	6.98	8.33	17.51	11.55	23.11	10.65
Merged-chr9-83593078-2	chr9	83592974	83593174	+	783.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	44736.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	8.88	4.02	2.28	10.46	4.09	15.68	11.63	12.25	9.05	5.02	7.54	1.25
Merged-chr16-91729825-2	chr16	91729738	91729938	+	783.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	CpG	467.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	8.48	11.82	2.85	2.01	1.64	5.64	6.98	8.75	11.8	7.53	5.53	7.83
Merged-chr2-112394164-3	chr2	112394068	112394268	+	783.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024254, intron 1 of 9)	L2|LINE|L2	14957.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	1.21	8.05	10.84	0.8	9.0	3.45	5.98	10.65	15.74	6.03	9.04	8.46
Merged-chr2-133430767-2	chr2	133430666	133430866	+	783.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121393.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.25	4.78	9.7	6.03	10.23	4.7	15.28	13.07	10.82	6.03	13.06	12.22
Merged-chr7-98374762-2	chr7	98374661	98374861	+	783.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	-13433.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	10.09	10.31	10.27	9.65	17.18	9.72	9.97	10.96	3.34	1.0	3.01	0.63
Merged-chr10-45960425-2	chr10	45960319	45960519	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152715.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.81	3.02	14.83	7.64	5.73	5.33	15.61	16.65	8.46	4.52	10.55	2.82
Merged-chr18-39582097-1	chr18	39581997	39582197	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94852.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.06	5.79	5.13	3.22	7.36	12.86	8.3	5.21	4.72	8.03	16.58	5.64
Merged-chr11-116633103-1	chr11	116633003	116633203	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6084.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	2.42	7.04	2.85	6.44	5.73	9.72	10.63	9.81	1.18	0.5	0.0	0.63
Merged-chr2-58159251-2	chr2	58159155	58159355	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	867.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	3.23	3.02	3.42	7.64	12.27	6.9	6.98	14.33	8.26	9.54	17.59	9.08
Merged-chr15-74753004-2	chr15	74752902	74753102	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011838)	promoter-TSS (NM_011838)	-23.0	NM_011838	23936.0	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	6.06	2.52	13.12	4.42	9.0	5.02	3.65	7.09	11.8	18.08	10.55	5.01
Merged-chr2-154374216-3	chr2	154374103	154374303	+	783.738892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1484.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	11.71	12.83	8.56	4.83	10.64	17.87	11.96	8.52	17.7	12.05	14.07	5.64
Merged-chr9-31050430-3	chr9	31050335	31050535	+	783.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115130, intron 1 of 5)	B4A|SINE|B4	19791.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	8.48	12.07	10.27	10.86	7.77	16.31	3.32	16.74	12.19	17.07	9.04	12.22
Merged-chr2-167687790-3	chr2	167687688	167687888	+	783.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1127.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	12.11	5.53	10.27	12.07	5.32	16.93	17.61	18.53	10.62	12.55	10.55	12.53
Merged-chr3-131300105-3	chr3	131300003	131300203	+	783.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027816, intron 1 of 4)	L1M5|LINE|L1	3124.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	6.46	11.07	10.27	11.26	19.64	18.19	8.97	16.65	18.1	29.12	13.06	12.22
Merged-chr5-113812250-3	chr5	113812138	113812338	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-11886.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	11.71	18.61	9.13	6.03	13.91	31.04	6.31	2.02	21.64	28.62	16.58	7.21
Merged-chr13-113877598-2	chr13	113877486	113877686	+	783.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83078.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	12.11	5.79	0.0	7.24	7.77	5.33	6.31	10.07	14.36	11.55	15.58	8.77
Merged-chr6-66537469-3	chr6	66537397	66537597	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	2276.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	3.63	7.8	7.42	3.62	1.64	3.45	6.64	7.37	11.41	15.06	7.03	5.95
Merged-chr6-31079091-1	chr6	31078991	31079191	+	783.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15998.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	4.04	5.28	6.28	4.83	9.41	8.47	7.31	12.0	5.51	8.03	9.55	9.71
Merged-chr18-46153227-3	chr18	46153133	46153333	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45585.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	14.94	8.8	6.85	6.03	12.68	5.33	8.3	10.54	14.16	11.05	6.03	6.89
Merged-chr1-131470820-3	chr1	131470723	131470923	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	B3|SINE|B2	56538.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	9.69	11.32	18.25	5.63	9.41	20.07	1.0	9.39	17.7	24.6	12.06	10.02
Merged-chr3-79539860-3	chr3	79539766	79539966	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	27813.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.65	3.77	10.27	12.87	18.41	13.8	15.28	33.34	12.0	4.52	9.55	10.96
Merged-chr1-128615659-2	chr1	128615576	128615776	+	783.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-23377.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.86	8.8	15.97	10.46	22.09	10.66	17.61	24.0	6.29	5.02	5.02	1.57
Merged-chr13-48566487-2	chr13	48566385	48566585	+	783.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28213.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	4.04	4.02	3.42	1.61	6.14	5.33	9.97	11.36	10.62	9.54	14.07	3.76
Merged-chr6-21958283-2	chr6	21958178	21958378	+	783.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	8663.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	6.86	7.04	5.7	9.25	9.41	9.41	3.32	10.01	14.36	13.05	10.05	6.27
Merged-chr4-95250308-2	chr4	95250221	95250421	+	783.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198099.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.83	5.53	5.7	15.28	6.55	6.9	5.65	10.37	4.33	4.52	16.08	13.78
Merged-chr6-48676145-2	chr6	48676049	48676249	+	783.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174960)	promoter-TSS (NM_174960)	14.0	NM_174960	317758.0	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	8.08	7.55	11.41	6.84	0.0	2.51	0.66	1.09	12.78	6.03	12.56	10.96
Merged-chr15-98830888-3	chr15	98830820	98831020	+	783.561096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033276)	TTS (NM_001033276)	588.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	8.08	9.06	15.4	11.26	7.36	7.84	6.64	9.42	9.44	14.56	12.06	8.77
Merged-chr10-93471575-3	chr10	93471413	93471613	+	783.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008517, intron 10 of 18)	intron (NM_008517, intron 10 of 18)	-17255.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.04	6.54	7.42	10.05	2.45	1.57	2.66	2.69	10.42	12.55	13.57	6.58
Merged-chr1-58716476-1	chr1	58716376	58716576	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3190.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.86	2.77	3.42	1.21	9.82	10.03	8.64	5.86	4.33	10.04	7.54	3.13
Merged-chr4-56086451-2	chr4	56086363	56086563	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-553988.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.06	5.79	6.28	10.46	9.0	3.45	2.66	13.63	11.01	10.54	4.52	8.46
Merged-chrX-164438005-1	chrX	164437905	164438105	+	783.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313737, intron 1 of 6)	intron (NM_001313737, intron 1 of 6)	1011.0	NM_001313737	68854.0	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.81	2.01	10.27	1.21	4.91	1.88	1.66	2.36	16.13	11.05	9.55	10.34
Merged-chr15-59787428-1	chr15	59787328	59787528	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045076)	TTS (NR_045076)	7531.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.23	1.51	3.42	2.41	3.27	4.7	7.64	6.34	5.9	5.02	5.53	1.57
Merged-chr3-154177892-2	chr3	154177802	154178002	+	783.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	152658.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	6.86	6.79	14.26	10.46	16.77	13.48	26.24	24.73	2.16	7.03	2.01	4.07
Merged-chr16-38709389-1	chr16	38709289	38709489	+	783.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	3646.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	8.08	5.53	8.56	5.23	9.41	5.33	6.31	3.31	15.54	3.51	16.08	6.89
Merged-chr17-17826129-1	chr17	17826029	17826229	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4059.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	4.44	3.02	2.28	3.22	13.91	4.08	4.32	4.35	1.77	7.03	3.52	7.52
Merged-chr1-52331575-2	chr1	52331462	52331662	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98330.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.81	5.79	7.99	8.85	31.09	42.02	23.25	40.37	8.26	2.51	15.58	9.4
Merged-chr9-120858392-1	chr9	120858292	120858492	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	56858.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	1.21	0.75	6.85	4.42	0.82	1.88	3.65	4.74	0.39	1.51	0.0	0.31
Merged-chr6-86600178-2	chr6	86600112	86600312	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27962.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	5.65	4.02	11.98	3.62	5.32	8.15	5.65	9.73	4.52	10.54	12.06	9.08
Merged-chr13-9449227-2	chr13	9449121	9449321	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	172696.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.81	5.53	11.41	3.22	4.09	1.25	9.3	10.96	7.28	8.54	5.02	1.88
Merged-chr4-87812617-2	chr4	87812498	87812698	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-6275.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.25	1.26	8.56	5.63	5.73	7.21	3.32	6.98	10.42	9.54	11.05	7.83
Merged-chr7-49741714-1	chr7	49741614	49741814	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17392.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	6.06	2.26	5.13	3.22	4.09	10.35	4.98	8.75	6.49	7.53	6.03	3.76
Merged-chr4-139240546-1	chr4	139240446	139240646	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	46435.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.81	0.75	2.28	0.0	5.32	7.53	3.32	6.62	2.16	0.5	0.0	4.39
Merged-chr14-55763674-4	chr14	55763543	55763743	+	783.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020490)	TTS (NM_020490)	2215.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	22.61	12.58	10.27	11.66	11.45	10.35	3.99	7.74	15.14	7.53	8.54	10.96
Merged-chr1-151917926-3	chr1	151917840	151918040	+	783.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 4 of 5)	intron (NM_197990, intron 4 of 5)	162566.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	11.71	11.32	19.97	24.13	10.64	7.21	14.62	24.93	13.18	10.54	14.07	18.48
Merged-chr17-79020582-4	chr17	79020503	79020703	+	783.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171004, intron 1 of 18)	CpG	213.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	2.02	5.28	3.99	6.03	10.23	8.78	6.64	6.93	12.78	12.05	9.55	11.28
Merged-chr4-55366208-3	chr4	55366107	55366307	+	783.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	MTC|LTR|ERVL-MaLR	16165.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	10.9	8.3	13.69	12.47	6.95	8.47	11.29	19.21	16.52	9.04	5.53	16.29
Merged-chr16-10982746-3	chr16	10982637	10982837	+	783.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	L2b|LINE|L2	10384.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	9.29	9.31	12.55	6.84	13.91	20.7	7.64	11.13	14.95	10.54	11.05	10.34
Merged-chr11-20329889-3	chr11	20329791	20329991	+	783.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	2822.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	4.04	9.06	7.99	9.65	3.27	5.02	9.63	11.41	8.46	7.03	10.55	5.33
Merged-chr5-24598732-3	chr5	24598628	24598828	+	783.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025891, exon 2 of 13)	exon (NM_025891, exon 2 of 13)	3274.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	12.52	10.31	13.12	12.87	9.82	12.86	12.95	10.85	11.01	15.57	12.56	7.21
Merged-chr1-36123895-2	chr1	36123783	36123983	+	783.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20430.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	3.23	0.75	1.14	1.61	13.91	12.54	11.63	14.64	9.44	12.05	4.02	3.13
Merged-chr3-138026457-3	chr3	138026340	138026540	+	783.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40948.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	2.42	9.06	7.99	24.53	16.77	18.19	16.94	31.01	11.01	10.04	15.58	7.83
Merged-chr14-105923024-2	chr14	105922921	105923121	+	783.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26202.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	7.27	6.04	13.69	7.64	8.59	17.56	12.29	11.61	2.16	3.51	11.05	9.4
Merged-chr5-38503176-2	chr5	38503085	38503285	+	783.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1033.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.63	4.78	3.42	1.21	7.36	9.09	7.97	8.72	12.39	7.53	10.05	14.41
Merged-chr8-94418180-2	chr8	94418045	94418245	+	783.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16958.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	7.67	2.52	0.57	6.84	11.86	2.51	9.63	5.05	6.88	4.02	10.05	5.33
Merged-chr9-61971282-2	chr9	61971178	61971378	+	783.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028748, intron 4 of 7)	intron (NM_028748, intron 4 of 7)	-24479.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	12.92	6.29	9.13	9.25	7.77	9.09	4.98	12.95	4.92	7.03	4.52	4.39
Merged-chr12-4841619-2	chr12	4841533	4841733	+	783.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	-38.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	4.04	8.05	3.99	7.24	14.32	10.98	8.64	9.2	8.06	5.52	5.53	4.07
Merged-chr10-56377951-1	chr10	56377851	56378051	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010288, intron 1 of 1)	intron (NM_010288, intron 1 of 1)	651.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	5.65	1.51	2.85	2.01	9.0	6.59	1.33	7.6	4.72	2.01	0.0	2.19
Merged-chr11-116811392-3	chr11	116811257	116811457	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16689.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	8.08	13.83	7.42	11.26	18.41	13.17	10.3	12.67	6.1	13.05	7.03	5.95
Merged-chr7-45181699-1	chr7	45181599	45181799	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_053256, exon 3 of 3)	exon (NM_053256, exon 3 of 3)	704.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	11.31	7.29	3.42	5.23	4.91	9.72	7.31	9.0	5.31	8.54	10.55	7.21
Merged-chr11-119087477-3	chr11	119087394	119087594	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1257.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	4.04	11.57	5.7	4.42	7.36	5.33	6.98	3.64	7.47	4.52	6.03	8.46
Merged-chr11-70239176-3	chr11	70239086	70239286	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173742, intron 1 of 2)	intron (NM_173742, intron 1 of 2)	666.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	11.71	9.06	2.28	5.63	12.68	12.23	6.98	4.37	9.83	5.02	8.04	7.83
Merged-chr19-12815416-2	chr19	12815315	12815515	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	16836.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	10.09	4.53	6.85	8.04	13.91	9.09	13.29	7.88	11.01	9.04	12.06	4.07
Merged-chr14-75183037-1	chr14	75182937	75183137	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46612.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.65	3.02	1.14	4.02	10.64	9.72	5.65	8.16	12.19	5.02	3.01	4.07
Merged-chr3-45284119-1	chr3	45284019	45284219	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045172, intron 6 of 8)	intron (NR_045172, intron 6 of 8)	94141.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	1.21	0.0	0.0	0.0	6.14	5.96	5.31	8.5	6.49	2.51	4.02	6.58
Merged-chr7-99102599-3	chr7	99102538	99102738	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	RMER17C|LTR|ERVK	38506.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	9.29	5.28	0.57	1.61	2.45	4.08	1.66	2.97	23.01	19.08	15.07	6.58
Merged-chrX-71274394-3	chrX	71274304	71274504	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	RMER19B|LTR|ERVK	59330.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	5.25	3.77	13.69	11.26	15.96	17.56	12.29	12.25	10.03	7.03	14.07	3.76
Merged-chr17-87387231-3	chr17	87387129	87387329	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40512.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	2.83	6.29	8.56	14.08	11.86	9.72	8.64	14.16	13.77	16.07	14.57	15.66
Merged-chr5-80955558-2	chr5	80955446	80955646	+	783.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65025.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	18.17	6.54	10.27	11.66	7.77	4.7	3.99	3.79	13.96	19.08	22.11	6.89
Merged-chr19-5002285-3	chr19	5002160	5002360	+	783.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12289.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	18.57	10.06	15.4	12.07	9.82	17.87	9.3	8.16	13.96	9.54	7.03	2.51
Merged-chr2-150135434-3	chr2	150135338	150135538	+	783.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	1240.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	10.9	3.02	17.11	18.5	12.68	6.27	10.3	12.64	8.65	7.03	12.56	6.89
Merged-chr11-98810689-3	chr11	98810549	98810749	+	783.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	-560.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	4.04	8.8	6.28	6.84	6.55	12.23	3.65	6.73	17.31	9.54	22.11	9.71
Merged-chr8-120741187-3	chr8	120741102	120741302	+	783.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2563.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.23	5.53	10.27	3.22	18.82	21.95	23.25	19.79	11.41	24.6	22.61	14.72
Merged-chr11-44611205-2	chr11	44611110	44611310	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6890.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	2.42	7.55	3.42	4.83	2.05	5.64	4.32	8.16	3.34	2.51	6.53	13.47
Merged-chr1-165739238-2	chr1	165739082	165739282	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24576.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.25	2.77	1.14	0.8	4.09	3.76	3.99	2.94	7.28	4.52	3.01	4.39
Merged-chr3-148316377-1	chr3	148316277	148316477	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	638258.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.63	6.29	6.85	3.62	8.18	5.64	8.64	9.11	8.65	4.02	7.54	5.33
Merged-chr14-25735581-2	chr14	25735502	25735702	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	33254.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.4	6.04	5.13	5.23	13.5	23.83	17.61	15.76	5.9	10.54	13.06	6.89
Merged-chr10-13871229-1	chr10	13871129	13871329	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-51.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	2.83	2.01	0.0	5.63	7.77	12.23	7.97	7.68	5.51	8.54	1.0	3.76
Merged-chr6-129616394-2	chr6	129616281	129616481	+	783.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286018, intron 4 of 7)	intron (NM_001286018, intron 4 of 7)	6302.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	4.85	6.29	10.84	8.45	3.27	10.03	4.98	12.0	6.1	7.53	10.05	6.58
Merged-chr8-13292582-3	chr8	13292489	13292689	+	783.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172282, intron 2 of 12)	intron (NM_172282, intron 2 of 12)	-4463.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	4.85	17.36	6.28	10.46	9.0	14.74	3.65	11.02	21.83	12.55	15.07	6.89
Merged-chr16-11704320-3	chr16	11704210	11704410	+	783.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-75392.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	8.08	11.32	6.28	16.09	8.59	3.45	14.62	18.7	7.28	5.52	10.05	10.65
Merged-chr12-113042052-2	chr12	113041951	113042151	+	783.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	27543.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.04	5.53	7.99	10.46	12.68	4.08	10.96	9.42	4.92	8.03	19.6	9.08
Merged-chr2-131206992-2	chr2	131206888	131207088	+	783.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3372.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	4.44	5.03	9.7	4.02	4.91	11.29	12.62	13.32	5.51	6.53	14.07	7.21
Merged-chr11-107638292-3	chr11	107638186	107638386	+	783.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105897)	TTS (NR_105897)	564.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	4.44	8.8	5.7	8.85	15.96	7.53	10.63	14.33	13.57	5.52	12.56	8.77
Merged-chr3-136347507-3	chr3	136347411	136347611	+	783.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-21445.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	11.71	6.54	6.85	15.28	7.36	11.29	5.31	14.13	21.44	12.55	13.57	8.77
Merged-chr13-10210958-2	chr13	10210846	10211046	+	783.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	149857.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	6.46	5.28	6.28	16.89	7.36	3.76	9.3	16.4	9.83	6.53	17.08	6.27
Merged-chr4-97746099-2	chr4	97746075	97746275	+	783.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-31451.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	1.62	8.3	0.57	0.8	1.23	2.2	4.98	3.81	7.47	4.02	1.51	0.94
Merged-chr16-29451888-2	chr16	29451797	29451997	+	783.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164613, intron 14 of 21)	intron (NM_001164613, intron 14 of 21)	-73165.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	10.9	5.79	0.0	4.83	13.09	12.54	6.31	11.3	11.8	11.05	19.09	7.21
Merged-chr3-65863465-3	chr3	65863380	65863580	+	783.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94769.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.08	6.79	7.42	9.25	10.64	19.76	5.98	20.3	21.83	14.56	22.61	10.96
Merged-chr3-22010094-3	chr3	22009990	22010190	+	783.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66562.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.08	6.79	14.26	12.07	25.77	14.74	15.94	20.75	12.98	13.56	24.62	13.16
Merged-chr6-148322775-3	chr6	148322681	148322881	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198967, intron 8 of 19)	intron (NM_198967, intron 8 of 19)	-31875.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	7.67	7.8	9.7	13.67	15.14	6.59	3.99	13.21	8.26	8.03	16.08	9.4
Merged-chr16-91785863-2	chr16	91785750	91785950	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	56479.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.65	1.51	7.42	2.82	2.45	5.33	3.32	9.81	12.0	10.54	6.53	10.02
Merged-chr3-105927225-2	chr3	105927134	105927334	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033780, exon 4 of 6)	exon (NM_001033780, exon 4 of 6)	5430.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	17.77	14.59	39.93	28.56	2.45	5.64	1.99	4.23	0.98	0.5	3.52	5.01
Merged-chr14-77806492-1	chr14	77806392	77806592	+	783.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7524.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	0.81	0.0	3.42	1.61	1.64	1.25	2.99	7.15	12.78	11.05	14.57	11.28
Merged-chr1-119836966-1	chr1	119836866	119837066	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_019933, exon 1 of 27)	5' UTR (NM_019933, exon 1 of 27)	105.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	4.44	9.81	4.56	11.66	9.82	10.66	6.98	6.42	6.69	7.03	10.05	5.64
Merged-chr15-90216339-1	chr15	90216239	90216439	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7972.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.4	1.01	6.85	5.23	8.59	12.23	9.63	4.15	5.31	0.5	12.56	1.88
Merged-chr5-23598140-1	chr5	23598040	23598240	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152854, intron 2 of 14)	MTC|LTR|ERVL-MaLR	18431.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	6.86	5.03	10.84	7.64	12.27	7.21	6.98	16.04	6.1	3.01	9.55	5.01
Merged-chr5-3488462-1	chr5	3488362	3488562	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	-55371.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	2.42	0.5	0.0	0.0	2.05	6.9	4.32	12.56	2.36	4.52	2.01	4.7
Merged-chr3-82333723-1	chr3	82333623	82333823	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24349.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	4.04	4.28	2.28	7.24	4.91	4.7	5.65	9.93	5.51	5.02	7.03	3.45
Merged-chr4-134087611-2	chr4	134087524	134087724	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162970, intron 15 of 19)	intron (NM_001162970, intron 15 of 19)	7449.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	7.67	10.06	11.41	2.41	5.32	4.7	0.66	3.7	19.28	9.54	16.58	13.78
Merged-chr13-42866371-1	chr13	42866271	42866471	+	783.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001302636, exon 1 of 13)	5' UTR (NM_001302636, exon 1 of 13)	124.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.42	1.76	3.42	2.82	1.23	3.76	5.98	5.86	11.01	1.51	5.53	9.71
Merged-chr9-13599758-1	chr9	13599658	13599858	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20231.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.85	0.75	5.7	4.83	0.82	1.57	7.97	8.44	0.2	2.01	0.0	2.51
Merged-chrX-48526603-2	chrX	48526486	48526686	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	7301.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	10.09	3.02	3.99	5.63	4.91	7.21	8.97	8.41	11.21	10.04	10.55	8.14
Merged-chr7-89419127-1	chr7	89419027	89419227	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7179.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	2.83	4.78	3.99	13.67	2.86	6.9	2.99	8.5	5.51	6.03	8.54	5.33
Merged-chr12-108933976-1	chr12	108933876	108934076	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	39704.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.25	1.71	1.21	0.0	2.82	6.64	6.17	0.98	3.01	3.01	1.57
Merged-chrX-152067970-1	chrX	152067870	152068070	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51542.0	NM_019710	24061.0	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	2.02	3.52	6.28	4.83	4.5	5.96	5.65	9.59	2.75	6.53	8.54	6.27
Merged-chr16-21687561-2	chr16	21687464	21687664	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	7101.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.86	3.27	1.14	8.85	7.77	5.96	6.98	8.05	12.39	15.57	7.03	7.83
Merged-chr11-113683411-1	chr11	113683311	113683511	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	740.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	4.85	8.3	7.42	6.84	8.18	8.15	9.63	7.46	6.88	4.02	8.04	11.9
Merged-chr8-127440700-2	chr8	127440595	127440795	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141043.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	1.21	0.75	2.28	0.0	0.41	5.64	0.66	3.98	31.27	13.56	34.17	15.04
Merged-chr3-144718045-2	chr3	144717933	144718133	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	2302.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.85	2.52	9.13	10.46	8.59	10.35	10.63	5.3	15.74	11.55	17.59	6.89
Merged-chr16-87495133-2	chr16	87495002	87495202	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040375)	promoter-TSS (NR_040375)	767.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	7.67	4.53	4.56	3.22	2.45	8.78	7.31	4.77	8.65	6.53	10.05	5.64
Merged-chr19-43959377-3	chr19	43959227	43959427	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030703, intron 8 of 8)	intron (NM_030703, intron 8 of 8)	-19129.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	8.08	7.29	2.85	8.45	7.36	9.72	2.33	5.55	10.23	7.03	14.07	4.39
Merged-chr1-65189758-1	chr1	65189658	65189858	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	3073.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	3.63	3.77	7.99	1.61	2.05	6.9	2.66	7.18	1.97	3.01	6.53	3.13
Merged-chr5-39820240-1	chr5	39820140	39820340	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-175609.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	1.51	8.56	3.22	4.91	1.57	5.98	8.44	4.33	5.52	12.56	6.27
Merged-chr7-107275047-1	chr7	107274947	107275147	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	65602.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	6.86	4.53	5.13	7.24	8.18	4.7	12.29	10.99	0.2	1.0	4.02	0.94
Merged-chr14-121451278-3	chr14	121451178	121451378	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53976.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	9.69	12.83	9.13	16.09	7.36	20.07	7.97	14.55	11.21	19.08	25.63	12.22
Merged-chr5-43865967-3	chr5	43865850	43866050	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2859.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.27	7.8	5.7	8.45	6.95	8.15	7.97	7.07	10.82	7.53	16.58	13.16
Merged-chr8-79496519-2	chr8	79496427	79496627	+	782.983337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97059.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.46	4.28	2.28	14.08	11.05	9.09	15.94	18.22	11.21	9.04	17.59	8.46
Merged-chr6-29214601-3	chr6	29214498	29214698	+	782.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1766.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	14.94	9.81	9.7	15.69	13.91	18.81	11.96	24.11	8.46	9.04	15.58	5.64
Merged-chr14-118431654-2	chr14	118431556	118431756	+	782.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65778.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	5.65	8.8	7.99	20.11	6.55	10.35	11.29	9.76	5.11	2.01	2.01	2.82
Merged-chr19-5912310-3	chr19	5912225	5912425	+	782.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011262, intron 1 of 10)	CpG	546.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	9.29	10.06	10.27	6.03	6.14	8.15	4.65	4.51	7.67	11.55	5.53	11.28
Merged-chr12-80435863-2	chr12	80435777	80435977	+	782.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	724.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	8.88	5.03	5.13	5.63	13.5	1.88	7.64	4.57	3.15	16.57	5.53	10.02
Merged-chr18-61120124-3	chr18	61120021	61120221	+	782.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	2653.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	9.69	6.29	11.41	7.24	13.91	11.92	6.31	13.6	15.74	15.06	12.56	7.21
Merged-chrX-96107643-3	chrX	96107541	96107741	+	782.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	11596.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	8.08	6.54	11.41	5.63	13.09	9.41	4.65	12.5	15.74	12.05	14.57	8.14
Merged-chrX-48355546-3	chrX	48355430	48355630	+	782.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178782, intron 2 of 14)	intron (NM_178782, intron 2 of 14)	14172.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	15.34	9.81	19.97	13.27	9.41	10.03	13.62	12.42	13.77	3.51	11.05	6.58
Merged-chr17-66096897-2	chr17	66096796	66096996	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	4663.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	5.25	7.55	8.56	5.63	7.77	5.96	6.64	7.35	9.64	6.53	9.55	8.46
Merged-chr16-81202175-2	chr16	81202077	81202277	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	1480.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	11.31	4.28	4.56	8.04	3.27	11.6	4.98	10.4	12.98	5.02	12.06	7.52
Merged-chr11-76033983-2	chr11	76033883	76034083	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6201.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	7.27	3.02	6.85	1.61	11.45	11.92	3.32	9.28	7.08	11.55	3.52	8.14
Merged-chr5-41767612-2	chr5	41767540	41767740	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3420.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	3.63	3.27	11.98	3.62	9.41	8.15	1.99	8.44	6.88	4.02	16.58	10.65
Merged-chr17-84646504-3	chr17	84646394	84646594	+	782.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172256, intron 8 of 12)	intron (NM_172256, intron 8 of 12)	19995.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	4.04	1.51	7.42	16.09	14.73	7.53	12.29	15.2	18.49	5.02	17.08	9.4
Merged-chr8-95166071-2	chr8	95165958	95166158	+	782.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23518.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	11.71	3.27	4.56	11.26	4.91	8.15	19.27	10.96	13.77	10.04	13.06	7.52
Merged-chr17-31082668-1	chr17	31082568	31082768	+	782.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	MTD|LTR|ERVL-MaLR	24974.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.46	1.01	0.0	3.22	6.55	3.45	8.3	3.56	3.93	6.03	4.52	2.51
Merged-chr16-57130971-3	chr16	57130869	57131069	+	782.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	9255.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	6.86	15.59	14.26	8.85	4.09	5.64	6.31	9.0	15.34	3.51	11.56	3.76
Merged-chr15-75791327-2	chr15	75791245	75791445	+	782.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-43423.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	14.54	5.79	12.55	17.29	8.18	6.9	17.61	15.17	8.06	3.51	3.52	5.95
Merged-chr13-9081581-4	chr13	9081398	9081598	+	782.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12383.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.04	6.04	5.7	10.05	6.55	5.96	7.64	8.47	5.9	5.52	5.53	5.01
Merged-chr3-88071998-3	chr3	88071870	88072070	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172526, intron 6 of 9)	intron (NM_172526, intron 6 of 9)	6334.0	NM_172526	214191.0	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	13.33	8.3	9.7	10.05	6.95	11.92	1.99	6.36	9.24	7.03	4.52	9.71
Merged-chr15-3228341-3	chr15	3228257	3228457	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42410.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	12.52	2.26	14.83	8.85	7.36	7.21	8.3	9.98	13.57	5.52	17.59	4.07
Merged-chr15-12196986-3	chr15	12196889	12197089	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8039.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	7.27	7.29	9.13	8.45	9.82	17.56	9.97	11.75	19.28	6.03	13.06	3.45
Merged-chr15-102617818-3	chr15	102617710	102617910	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	7654.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	10.9	4.53	10.27	12.07	8.59	9.09	4.98	13.93	15.14	19.58	8.54	9.4
Merged-chr4-43443253-5	chr4	43443194	43443394	+	782.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011571, exon 1 of 10)	5' UTR (NM_011571, exon 1 of 10)	1017.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	7.67	17.61	11.41	13.27	9.82	7.21	4.32	6.53	6.88	8.54	5.02	10.65
Merged-chr10-42271585-3	chr10	42271483	42271683	+	782.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5159.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	17.36	4.02	20.54	9.25	13.5	12.54	11.63	19.57	9.44	7.53	16.08	11.59
Merged-chr12-80329817-2	chr12	80329731	80329931	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61846.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	2.42	8.8	7.42	0.8	5.32	5.96	6.31	5.97	8.26	15.57	7.03	3.76
Merged-chr13-74301349-2	chr13	74301243	74301443	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9012.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	4.44	2.52	7.99	6.03	3.68	6.59	4.32	6.62	8.26	6.03	15.07	2.82
Merged-chr5-76337296-2	chr5	76337193	76337393	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019515, intron 8 of 9)	intron (NM_019515, intron 8 of 9)	6055.0	NR_152115	74621.0	Mm.444687	NR_152115		4930432L08Rik	-	RIKEN cDNA 4930432L08 gene	ncRNA	1.62	1.26	2.28	3.62	5.73	4.08	7.31	8.58	11.41	2.51	14.07	7.21
Merged-chr5-115475915-1	chr5	115475815	115476015	+	782.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8382.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.21	1.51	2.28	0.8	6.55	5.02	2.66	3.59	15.54	17.57	14.57	8.14
Merged-chr13-37291526-2	chr13	37291425	37291625	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53820.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.86	6.29	7.99	12.47	4.09	15.05	6.31	11.61	12.19	13.05	8.54	5.33
Merged-chr19-21962847-1	chr19	21962747	21962947	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-176270.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	3.63	4.02	3.42	2.41	9.41	7.84	5.65	6.87	0.79	0.0	5.02	2.82
Merged-chr12-76191165-2	chr12	76191070	76191270	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13911.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	14.94	4.53	5.13	3.22	8.18	15.99	5.31	11.05	12.78	11.05	14.07	10.34
Merged-chr14-31440911-3	chr14	31440789	31440989	+	782.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4789.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	9.29	7.29	11.98	11.26	18.41	11.92	8.64	14.02	13.18	11.55	13.06	7.21
Merged-chr2-156434490-2	chr2	156434383	156434583	+	782.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013510, intron 1 of 21)	MTC|LTR|ERVL-MaLR	13574.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	2.83	1.51	2.85	1.21	8.59	23.52	18.6	12.5	9.44	3.51	10.55	8.14
Merged-chr4-136505473-2	chr4	136505379	136505579	+	782.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	B3A|SINE|B2	35718.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.46	4.78	3.42	6.84	38.86	11.92	17.94	29.1	19.08	10.04	5.02	4.39
Merged-chr1-124045676-3	chr1	124045628	124045828	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199021)	promoter-TSS (NM_199021)	-169.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.04	4.78	7.42	2.82	9.41	9.72	9.63	3.7	2.36	4.02	8.04	4.07
Merged-chr9-67842974-3	chr9	67842874	67843074	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	2578.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	11.71	5.28	14.83	9.25	20.46	15.37	15.28	20.07	9.64	13.05	7.54	9.4
Merged-chr9-55327415-3	chr9	55327312	55327512	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172923, intron 1 of 10)	intron (NM_172923, intron 1 of 10)	499.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	18.98	37.23	10.84	0.0	9.0	42.65	7.31	2.97	12.19	16.07	1.0	1.88
Merged-chr3-80958828-1	chr3	80958728	80958928	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45168.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	4.44	4.28	10.27	9.65	9.0	3.76	6.31	9.53	11.01	3.51	6.03	4.7
Merged-chr19-4284480-1	chr19	4284380	4284580	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1343.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	6.06	5.03	8.56	3.62	7.36	2.82	7.64	8.02	7.67	3.51	8.54	3.45
Merged-chr9-123528964-3	chr9	123528773	123528973	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-880.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	6.86	6.54	5.13	2.82	9.0	13.17	9.63	4.68	5.31	8.54	6.53	5.33
Merged-chrX-137141885-1	chrX	137141785	137141985	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21559.0	NM_007957	13984.0	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	3.23	4.78	9.13	7.64	6.55	5.02	5.65	6.9	7.28	5.02	8.04	4.7
Merged-chr6-108740725-3	chr6	108740629	108740829	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-42330.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	9.29	9.56	14.26	5.63	20.86	9.41	20.26	39.81	12.0	6.03	9.04	5.64
Merged-chr2-117195150-1	chr2	117195050	117195250	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10023.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	4.44	6.04	0.57	1.21	1.23	4.7	5.31	4.85	1.77	1.51	13.06	2.82
Merged-chr14-117690095-2	chr14	117690014	117690214	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	Charlie5|DNA|hAT-Charlie	263733.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	4.85	5.53	3.42	9.25	3.68	11.6	6.98	5.97	10.42	12.55	11.56	5.33
Merged-chr10-79417302-2	chr10	79417206	79417406	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51652.0	NM_001104537	625029.0	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	4.44	2.01	0.0	12.87	18.82	10.66	17.94	14.89	4.52	8.03	14.57	8.14
Merged-chr5-142630532-2	chr5	142630428	142630628	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178398, intron 1 of 11)	intron (NM_178398, intron 1 of 11)	944.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	6.06	4.28	5.13	11.26	4.09	9.09	1.99	6.73	9.64	17.07	12.06	7.21
Merged-chr2-43806135-2	chr2	43806022	43806222	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57298.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.65	2.52	10.84	5.63	3.27	10.03	3.32	7.01	10.62	9.54	18.59	8.77
Merged-chr7-90134035-4	chr7	90133970	90134170	+	782.645874	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3857.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	11.31	8.05	2.28	7.64	3.27	11.92	5.31	4.96	12.19	13.05	10.05	9.08
Merged-chr1-93014638-3	chr1	93014547	93014747	+	782.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001110315)	TTS (NM_001110315)	8313.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	6.46	9.31	6.85	2.01	7.36	7.53	8.64	9.22	16.72	15.57	25.63	8.46
Merged-chr4-108348669-3	chr4	108348575	108348775	+	782.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	20523.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	8.08	6.29	13.69	7.64	12.68	10.03	9.63	21.79	21.44	10.54	7.03	9.08
Merged-chr19-21274891-3	chr19	21274788	21274988	+	782.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2610.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	10.5	7.29	9.13	6.44	9.41	13.17	23.58	7.91	15.14	8.03	19.6	8.14
Merged-chr9-57917879-1	chr9	57917779	57917979	+	782.599976	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027086, intron 3 of 10)	(TG)n|Simple_repeat|Simple_repeat	6893.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	10.9	10.06	23.39	12.07	1.23	4.39	3.99	1.77	7.08	4.02	4.02	5.33
Merged-chr7-38188005-2	chr7	38187889	38188089	+	782.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028166, intron 1 of 3)	intron (NM_028166, intron 1 of 3)	4202.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	16.96	18.11	23.39	9.65	10.23	10.66	5.98	1.4	2.16	9.04	9.04	4.07
Merged-chr19-32780524-3	chr19	32780435	32780635	+	782.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	22958.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	9.29	3.27	7.99	12.07	20.05	10.35	7.97	9.48	12.19	14.56	5.53	8.14
Merged-chr7-81904361-3	chr7	81904277	81904477	+	782.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013886, intron 2 of 5)	MLT1J|LTR|ERVL-MaLR	30082.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	13.33	6.04	9.7	8.85	12.68	6.9	7.31	14.41	17.11	15.57	22.11	14.1
Merged-chr3-36060302-2	chr3	36060224	36060424	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	-5655.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	9.69	7.04	2.85	8.45	11.45	6.27	10.3	10.04	11.8	5.52	12.06	5.64
Merged-chr14-120243365-2	chr14	120243270	120243470	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32299.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.63	2.01	7.42	4.42	4.09	7.84	4.65	10.99	12.0	6.53	10.05	4.39
Merged-chr1-62244906-1	chr1	62244806	62245006	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 15 of 22)	intron (NM_001081050, intron 15 of 22)	-108797.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	4.85	4.02	12.55	6.84	9.0	3.76	10.63	16.26	2.16	2.01	4.02	4.39
Merged-chr7-104167414-2	chr7	104167309	104167509	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2593.0	NM_172905	244180.0	Mm.17149	NM_172905	ENSMUSG00000044265	Olfm5	E030002O03Rik	olfactomedin 5	protein-coding	5.25	2.01	1.71	2.41	4.09	1.25	6.31	4.26	10.03	4.02	14.57	5.01
Merged-chr7-126693440-2	chr7	126693337	126693537	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029420, intron 1 of 5)	B3|SINE|B2	2346.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	8.88	5.79	7.99	6.84	10.64	12.86	1.0	7.68	14.75	7.53	14.07	7.83
Merged-chr12-40575173-1	chr12	40575073	40575273	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	L1MB2|LINE|L1	129120.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.04	2.52	4.56	3.22	6.55	6.9	2.33	9.93	9.44	2.01	4.02	1.88
Merged-chr2-46315455-2	chr2	46315357	46315557	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	618852.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.85	11.82	3.42	3.62	11.86	4.39	4.65	10.46	12.98	12.05	9.55	7.83
Merged-chr6-125501441-2	chr6	125501350	125501550	+	782.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6690.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	11.31	10.06	11.41	12.87	15.14	8.47	6.98	11.27	3.93	5.02	8.04	14.1
Merged-chr2-132145076-1	chr2	132144976	132145176	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018824)	promoter-TSS (NM_018824)	32.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.23	6.29	3.99	1.61	14.32	10.66	2.99	5.44	8.26	5.02	12.06	1.57
Merged-chr15-40047386-2	chr15	40047284	40047484	+	782.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155348, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	2196.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	4.04	8.55	12.55	6.44	4.91	6.59	5.98	12.17	6.69	6.03	7.03	6.89
Merged-chr7-5099973-2	chr7	5099873	5100073	+	782.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16938.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	10.09	12.32	11.41	10.05	12.27	15.99	9.3	16.88	6.1	11.55	4.52	8.46
Merged-chr17-28770157-1	chr17	28770057	28770257	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011950, intron 2 of 11)	CpG-6188	840.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	4.85	3.27	6.28	7.24	11.45	4.08	3.65	5.33	5.9	5.02	6.03	2.82
Merged-chr16-33967436-1	chr16	33967336	33967536	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	-398.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.86	5.03	5.13	8.85	5.73	7.84	5.31	5.24	6.49	8.54	3.52	1.57
Merged-chr11-70813196-2	chr11	70813087	70813287	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-626.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	2.83	7.04	7.99	5.23	9.82	12.54	8.3	11.66	13.96	4.02	11.05	8.46
Merged-chr14-54902346-3	chr14	54902254	54902454	+	782.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	8211.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	8.88	11.57	9.7	14.88	12.27	12.54	12.29	14.64	23.21	11.05	24.62	10.02
Merged-chr11-49088299-4	chr11	49088177	49088377	+	782.474976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	1260.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	12.92	10.31	3.99	2.82	3.68	5.96	2.99	3.81	6.1	11.55	2.51	8.77
Merged-chr17-84268750-3	chr17	84268663	84268863	+	782.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80816.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	10.5	10.56	14.83	5.23	14.73	8.78	15.28	17.97	10.23	6.03	14.57	11.59
Merged-chr12-117466125-2	chr12	117466036	117466236	+	782.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50343.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.04	0.5	7.99	2.01	9.0	6.27	6.31	26.3	19.87	12.55	17.59	9.4
Merged-chr10-19687948-2	chr10	19687871	19688071	+	782.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24616.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	6.06	4.53	2.85	6.03	10.23	7.21	8.3	7.51	5.11	6.03	19.6	5.33
Merged-chr17-48931984-3	chr17	48931913	48932113	+	782.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027452)	promoter-TSS (NM_027452)	-569.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	11.71	8.55	11.98	14.48	7.77	6.9	6.64	8.24	4.52	12.55	14.07	5.01
Merged-chr2-35461420-3	chr2	35461330	35461530	+	782.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	19.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	17.36	4.78	9.7	8.45	13.09	7.53	9.97	13.35	5.11	12.55	6.53	9.08
Merged-chr9-60181047-3	chr9	60180940	60181140	+	782.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-39820.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	7.67	11.57	8.56	12.07	18.82	10.98	23.25	23.02	7.28	9.04	17.59	6.89
Merged-chr9-3036442-3	chr9	3036336	3036536	+	782.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	2307.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	13.73	14.59	19.97	18.9	24.96	14.42	15.94	59.72	6.69	11.55	12.06	10.02
Merged-chr4-118425629-3	chr4	118425558	118425758	+	782.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2435.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	3.23	7.8	5.7	2.41	7.77	11.29	10.3	6.56	11.8	12.55	17.59	14.1
Merged-chr18-30503974-2	chr18	30503880	30504080	+	782.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	231115.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.23	11.07	9.7	18.5	4.5	4.7	8.64	6.28	12.19	4.02	3.01	2.51
Merged-chr11-120539175-3	chr11	120539087	120539287	+	782.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008101)	TTS (NM_008101)	8460.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	13.73	11.07	6.85	10.05	8.59	14.11	7.31	7.6	16.33	17.07	21.61	8.46
Merged-chr7-63824236-1	chr7	63824136	63824336	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-92621.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.27	1.51	3.42	9.25	6.95	4.39	6.31	10.35	2.95	3.01	8.04	5.64
Merged-chr7-80346402-1	chr7	80346302	80346502	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026812)	TTS (NM_026812)	3265.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	4.85	7.55	2.28	2.82	10.23	9.72	4.65	9.22	1.18	3.01	1.51	1.88
Merged-chr12-45074347-1	chr12	45074247	45074447	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_144552, exon 1 of 6)	5' UTR (NM_144552, exon 1 of 6)	136.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	5.25	6.54	2.28	5.63	6.95	4.7	9.97	8.33	5.9	4.02	2.51	4.7
Merged-chr7-30760953-3	chr7	30760843	30761043	+	782.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2813.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	3.23	6.29	7.99	8.85	8.18	1.88	3.32	6.17	4.52	3.51	16.58	9.71
Merged-chr9-118678559-2	chr9	118678436	118678636	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-33156.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.04	4.28	3.99	0.0	6.95	7.84	10.3	4.65	26.55	24.1	29.65	11.59
Merged-chr3-89729839-1	chr3	89729739	89729939	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-879.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	4.04	7.8	5.7	5.63	9.0	7.53	3.65	7.6	10.42	13.05	5.02	2.19
Merged-chrX-167319411-2	chrX	167319298	167319498	+	782.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	11173.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	6.86	5.79	6.28	8.04	20.05	7.84	9.97	9.03	8.46	10.04	3.01	5.01
Merged-chr10-58383445-3	chr10	58383353	58383553	+	782.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10920.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	13.73	10.82	21.68	12.87	9.41	15.05	2.66	11.58	8.85	8.03	10.05	7.52
Merged-chr13-44532919-3	chr13	44532834	44533034	+	782.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93207.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	8.08	8.05	6.28	13.67	18.41	13.48	19.6	18.06	9.83	22.59	15.58	8.14
Merged-chr17-84354223-3	chr17	84354097	84354297	+	782.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	L1M4c|LINE|L1	112011.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	6.46	8.3	18.25	10.46	4.91	3.76	5.65	6.36	6.88	7.03	16.58	3.76
Merged-chr14-21499668-4	chr14	21499609	21499809	+	782.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205241)	promoter-TSS (NM_001205241)	-61.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.23	12.07	3.99	4.83	11.05	5.33	14.62	7.26	9.24	5.52	10.05	10.34
Merged-chr11-118163881-3	chr11	118163772	118163972	+	782.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001112699)	TTS (NM_001112699)	-34653.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.81	5.28	11.98	6.44	25.77	7.21	11.63	13.54	9.64	14.56	21.1	12.22
Merged-chr13-80960026-2	chr13	80959922	80960122	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4052.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.42	5.53	5.7	0.0	10.23	5.33	9.63	11.69	10.42	8.03	5.53	4.39
Merged-chr11-5009858-2	chr11	5009776	5009976	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	23052.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	8.08	3.77	14.83	2.01	22.91	11.6	21.59	22.77	6.29	10.04	15.07	6.27
Merged-chr3-60559927-1	chr3	60559827	60560027	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	58748.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.23	4.02	5.7	8.04	9.41	6.59	19.27	18.53	1.77	2.01	4.02	4.39
Merged-chr10-100868732-1	chr10	100868632	100868832	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur2|LINE|L1	-127097.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	2.02	2.77	7.99	4.83	6.55	15.37	4.98	8.24	5.51	8.54	12.06	2.51
Merged-chr10-20595576-1	chr10	20595476	20595676	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	MER102b|DNA|hAT-Charlie	-47248.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.02	6.54	5.7	1.61	9.0	5.64	5.31	3.9	2.36	3.01	2.51	3.76
Merged-chr5-26904520-2	chr5	26904458	26904658	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198886)	promoter-TSS (NM_001198886)	-220.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.81	0.5	0.0	0.0	0.0	3.76	9.3	3.06	4.52	3.01	3.01	5.95
Merged-chr18-38343632-2	chr18	38343538	38343738	+	782.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4645.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	9.29	8.3	17.11	4.02	8.18	23.52	17.27	11.58	5.11	2.51	4.02	5.64
Merged-chr6-30204562-3	chr6	30204448	30204648	+	782.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	27925.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	15.75	13.08	10.27	10.46	3.68	9.41	5.31	10.68	11.41	12.55	36.68	18.8
Merged-chr9-58899930-4	chr9	58899892	58900092	+	782.229187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042752, intron 20 of 27)	intron (NM_001042752, intron 20 of 27)	76480.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	1.62	2.77	6.85	7.64	1.64	9.41	3.99	4.4	6.29	2.51	5.02	5.95
Merged-chr9-72275344-3	chr9	72275232	72275432	+	782.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146224, intron 1 of 21)	CpG	444.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	7.67	13.83	4.56	9.65	13.5	7.84	9.3	6.87	12.98	13.56	15.07	6.27
Merged-chr3-100998262-3	chr3	100998152	100998352	+	782.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-28589.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	7.27	10.56	8.56	7.64	14.73	13.17	14.95	12.14	8.26	12.05	6.53	5.64
Merged-chr4-144956035-1	chr4	144955935	144956135	+	782.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	62898.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.63	4.02	5.13	3.22	11.45	10.03	13.95	12.42	5.11	8.54	8.04	4.39
Merged-chr14-27405750-3	chr14	27405626	27405826	+	782.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23108.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	8.08	5.28	9.7	8.45	9.82	2.51	6.64	10.63	18.29	14.56	16.08	5.64
Merged-chr2-128718539-3	chr2	128718461	128718661	+	782.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	19646.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.46	3.77	9.7	16.89	10.23	7.53	14.62	18.03	10.23	9.54	12.56	5.95
Merged-chr6-134706668-2	chr6	134706564	134706764	+	782.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	65724.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	10.09	8.05	11.98	11.26	7.77	10.66	7.64	14.24	16.13	6.03	6.03	6.27
Merged-chr3-22090531-2	chr3	22090440	22090640	+	782.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13888.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.25	5.03	8.56	9.25	6.95	8.47	5.98	11.16	12.59	8.54	7.03	5.33
Merged-chrX-12589924-2	chrX	12589741	12589941	+	782.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	2082.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	4.85	3.77	2.85	4.02	3.68	2.51	2.66	2.61	2.75	5.52	1.51	1.88
Merged-chr11-107124603-3	chr11	107124524	107124724	+	782.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	7298.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	10.09	7.8	26.24	6.44	15.14	25.09	11.29	13.74	14.55	12.05	14.07	10.02
Merged-chr6-116123450-3	chr6	116123358	116123558	+	782.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	69916.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.67	7.04	20.54	6.03	11.05	10.03	1.99	10.18	10.82	19.08	9.04	6.27
Merged-chr1-9906007-2	chr1	9905910	9906110	+	782.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2628.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	10.09	4.02	16.54	9.25	9.41	6.27	8.97	6.84	10.42	10.54	3.52	8.46
Merged-chr11-61868240-2	chr11	61868122	61868322	+	782.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13130.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	7.27	5.79	7.99	18.5	13.09	8.15	4.65	9.42	16.92	12.55	11.05	12.53
Merged-chr10-12930001-2	chr10	12929928	12930128	+	782.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6901.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	11.71	9.31	7.99	6.44	5.32	18.81	15.28	14.55	5.51	7.03	4.52	3.45
Merged-chr5-136035083-3	chr5	136035000	136035200	+	782.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-3396.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	9.69	9.81	18.25	4.02	12.68	13.17	15.94	8.27	10.42	10.54	16.58	7.21
Merged-chr2-116980059-3	chr2	116979999	116980199	+	782.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79947.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.85	7.04	7.42	7.64	11.86	16.62	3.99	7.43	12.0	16.57	11.05	9.71
Merged-chr11-74476127-3	chr11	74476014	74476214	+	782.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	111443.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	20.59	10.06	23.39	8.04	21.68	34.18	18.93	6.17	14.55	27.62	17.59	8.46
Merged-chr17-71476064-1	chr17	71475964	71476164	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-721.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	11.71	8.55	13.69	8.85	3.68	9.72	6.64	5.24	19.67	14.56	18.59	12.22
Merged-chr16-43955674-1	chr16	43955574	43955774	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	23376.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	3.63	4.02	5.7	5.23	4.09	4.39	5.98	7.37	4.33	2.51	7.03	7.52
Merged-chr11-106762291-1	chr11	106762191	106762391	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11065.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	2.83	2.52	5.13	4.42	12.68	3.45	1.0	7.07	2.95	4.52	2.01	3.13
Merged-chrX-136976932-2	chrX	136976825	136977025	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207267)	promoter-TSS (NM_207267)	-51.0	NM_207267	399591.0	Mm.381904	NM_207267	ENSMUSG00000072955	Tmsb15l	4930488E11Rik|Tb15r|Tmsb15b1-Tmsb15b2|Tmsb15r	thymosin beta 15b like	protein-coding	12.52	3.52	0.57	7.24	13.91	19.76	22.59	18.22	10.62	7.03	15.07	7.21
Merged-chr4-62330072-1	chr4	62329972	62330172	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	30524.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	4.44	4.53	7.42	1.21	7.77	7.53	2.66	7.74	10.23	10.54	5.53	6.89
Merged-chr6-113039801-1	chr6	113039701	113039901	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR1B|LTR|ERV1	-6501.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	1.62	2.52	1.14	3.62	4.09	0.63	7.31	6.08	6.49	7.53	9.04	2.82
Merged-chr17-78374857-1	chr17	78374757	78374957	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_015800, exon 17 of 17)	3' UTR (NM_015800, exon 17 of 17)	43295.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	7.27	4.53	3.42	3.22	9.0	2.82	0.33	6.06	2.56	8.54	1.51	3.76
Merged-chr4-13756584-1	chr4	13756484	13756684	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111027, intron 1 of 11)	intron (NM_001111027, intron 1 of 11)	5287.0	NM_001111027	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.81	4.28	1.14	9.25	9.0	9.09	7.31	17.52	1.97	5.52	8.04	2.82
Merged-chr9-41156884-1	chr9	41156784	41156984	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	CpG	1178.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.25	7.04	1.71	0.0	6.14	5.96	2.33	7.37	10.23	3.51	5.02	5.01
Merged-chr4-12538762-1	chr4	12538662	12538862	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-366747.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	2.42	2.01	0.0	1.21	1.64	2.51	4.65	4.93	1.18	5.52	2.51	1.88
Merged-chr19-6274426-1	chr19	6274326	6274526	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2470.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	9.69	7.29	6.85	0.8	9.82	15.05	3.99	7.26	6.69	6.53	8.54	3.13
Merged-chr16-21998185-1	chr16	21998085	21998285	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2643.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	2.42	2.77	2.28	2.41	8.18	12.86	10.63	6.45	6.29	9.54	10.05	7.21
Merged-chr8-33517284-2	chr8	33517206	33517406	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32995.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	2.02	3.77	3.42	7.24	3.27	8.78	3.99	6.53	24.39	22.09	25.63	7.21
Merged-chr19-56400411-2	chr19	56400325	56400525	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007611, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3296.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	7.27	4.53	3.99	4.83	9.0	9.41	6.98	10.32	8.46	11.55	20.6	12.53
Merged-chr3-146465010-1	chr3	146464910	146465110	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001293672, exon 7 of 7)	3' UTR (NM_001293672, exon 7 of 7)	14543.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	3.23	4.02	2.28	2.41	6.95	7.53	4.32	14.19	1.18	0.0	0.5	0.94
Merged-chr3-79145824-2	chr3	79145734	79145934	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	41.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.25	2.77	0.0	5.23	12.68	10.03	5.98	5.38	12.39	5.52	16.58	6.89
Merged-chr1-75400932-1	chr1	75400832	75401032	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	847.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	1.62	2.77	10.27	4.02	4.09	5.02	1.99	7.37	5.7	5.52	9.55	3.45
Merged-chr7-62420150-1	chr7	62420050	62420250	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011746)	promoter-TSS (NM_011746)	-11.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	1.62	3.02	0.0	0.8	4.09	3.76	5.98	9.48	1.57	0.5	1.51	0.94
Merged-chr13-8680663-2	chr13	8680567	8680767	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	190377.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	2.26	3.99	2.41	17.59	16.93	25.58	34.71	8.85	7.03	11.05	7.83
Merged-chr17-35197309-2	chr17	35197207	35197407	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2335.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	10.09	14.84	7.99	2.82	10.64	15.99	3.65	3.25	5.9	6.03	0.5	0.94
Merged-chr14-36962608-3	chr14	36962522	36962722	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	6142.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	5.25	7.8	9.13	3.62	13.5	8.78	16.28	11.72	16.92	35.15	20.1	8.77
Merged-chr7-88344121-1	chr7	88344021	88344221	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66036.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.65	1.76	1.14	2.82	1.64	1.88	3.32	1.57	5.31	1.51	1.0	4.7
Merged-chr3-65930777-1	chr3	65930677	65930877	+	782.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	27472.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.63	5.53	0.57	3.22	11.45	6.59	6.64	3.81	13.37	7.53	10.05	6.89
Merged-chr6-39301685-1	chr6	39301585	39301785	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75750.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	2.42	1.51	0.0	0.8	4.91	7.21	0.66	9.64	2.36	4.02	3.01	2.51
Merged-chr19-45664183-1	chr19	45664083	45664283	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3990.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	1.62	2.01	1.14	2.01	7.36	2.2	4.98	7.32	7.67	5.02	0.5	4.7
Merged-chrX-10485090-1	chrX	10484990	10485190	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019634)	promoter-TSS (NM_019634)	-26.0	NM_019634	21912.0	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	7.67	4.28	2.28	4.42	5.73	6.59	6.64	9.39	1.97	4.02	8.04	0.31
Merged-chr5-123907828-1	chr5	123907728	123907928	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026603, intron 1 of 7)	intron (NM_026603, intron 1 of 7)	553.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	8.88	4.02	5.13	5.23	9.82	5.64	3.99	5.78	5.11	2.51	6.53	4.07
Merged-chr9-97534563-2	chr9	97534476	97534676	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022319, intron 6 of 17)	intron (NM_022319, intron 6 of 17)	-164618.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	9.29	9.31	6.28	6.84	11.86	4.7	2.99	5.36	13.37	7.03	12.06	4.7
Merged-chr3-65990766-3	chr3	65990658	65990858	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-32509.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.86	7.04	2.85	8.04	11.86	5.33	7.31	18.22	15.14	20.08	11.05	6.89
Merged-chr1-88279463-1	chr1	88279363	88279563	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1884.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	2.02	3.77	0.0	7.24	9.0	4.7	7.64	4.57	6.1	5.02	6.03	5.33
Merged-chr9-63132267-1	chr9	63132167	63132367	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14713.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.63	15.34	1.14	4.02	4.5	8.47	7.97	8.8	6.88	14.06	5.02	7.21
Merged-chr15-61649936-1	chr15	61649836	61650036	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	124515.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	2.42	3.02	5.7	8.85	2.86	6.9	4.32	7.12	0.98	3.51	3.01	3.45
Merged-chr3-131218473-1	chr3	131218373	131218573	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276403, intron 11 of 11)	intron (NM_001276403, intron 11 of 11)	53628.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	5.25	5.03	3.99	4.42	9.82	6.9	12.62	17.8	8.46	6.03	10.55	4.39
Merged-chr11-100713906-3	chr11	100713859	100714059	+	781.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029307, exon 1 of 1)	exon (NM_029307, exon 1 of 1)	109.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	10.9	11.07	10.27	6.84	12.27	5.64	3.99	9.36	6.49	8.54	7.03	7.52
Merged-chr16-33923158-2	chr16	33923054	33923254	+	781.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43884.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.27	4.28	10.27	1.61	13.09	3.45	5.65	7.93	9.05	11.05	17.59	9.4
Merged-chr9-66361929-3	chr9	66361816	66362016	+	781.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 1 of 77)	RSINE1|SINE|B4	11466.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	13.33	10.06	9.13	16.09	11.86	8.15	5.31	8.92	15.54	10.04	13.06	8.14
Merged-chr11-8424409-3	chr11	8424282	8424482	+	781.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240153.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.27	9.06	6.85	5.63	5.32	11.6	1.0	6.08	12.19	8.54	15.58	5.64
Merged-chr4-44065882-2	chr4	44065782	44065982	+	781.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190414, intron 2 of 11)	intron (NM_001190414, intron 2 of 11)	6835.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	3.63	9.56	6.85	0.8	15.55	11.29	8.64	10.49	19.87	13.05	13.57	11.28
Merged-chr10-95279038-2	chr10	95278934	95279134	+	781.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	MTD|LTR|ERVL-MaLR	44675.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	9.69	11.57	38.79	12.87	20.05	10.98	9.3	19.71	8.46	3.01	6.03	6.27
Merged-chr1-152573874-2	chr1	152573772	152573972	+	781.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51345.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.46	5.53	9.7	9.25	17.59	20.38	7.64	19.88	10.82	9.04	9.55	8.77
Merged-chr3-121721927-3	chr3	121721902	121722102	+	781.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1535.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	8.48	6.04	7.42	2.41	5.32	7.84	7.64	6.17	12.98	23.1	7.54	9.08
Merged-chr9-119335079-3	chr9	119335009	119335209	+	781.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010851)	TTS (NM_010851)	4931.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0.0	4.02	16.54	11.66	2.45	1.57	10.63	6.08	10.82	12.05	6.53	10.34
Merged-chr7-101884331-3	chr7	101884235	101884435	+	781.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291353, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-1525.0	NM_001291352	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	15.34	9.56	13.12	8.45	13.09	10.66	5.31	11.89	14.55	10.54	13.57	9.71
Merged-chr8-83159125-2	chr8	83159026	83159226	+	781.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6226.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.88	4.53	8.56	10.05	12.27	19.44	6.64	12.17	7.47	4.52	13.06	4.7
Merged-chr9-37086323-2	chr9	37086225	37086425	+	781.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	Lx8b|LINE|L1	60997.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	14.13	8.8	15.97	10.86	8.59	13.8	10.63	22.6	0.0	1.0	1.0	1.88
Merged-chr12-85704770-3	chr12	85704670	85704870	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18050.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	11.31	7.04	2.85	6.84	10.23	19.44	8.97	5.8	13.77	11.55	3.52	12.22
Merged-chr4-149728996-3	chr4	149728912	149729112	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284270, intron 4 of 10)	intron (NM_001284270, intron 4 of 10)	8758.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	9.69	9.06	11.41	2.82	13.91	17.56	8.3	18.42	9.05	14.56	14.07	5.01
Merged-chr2-170240278-3	chr2	170240185	170240385	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97610.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	11.71	12.32	9.7	8.45	9.41	17.56	3.65	17.78	24.98	12.55	14.57	8.77
Merged-chr17-34034306-3	chr17	34034212	34034412	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205214, intron 4 of 9)	intron (NM_001205214, intron 4 of 9)	1962.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	14.13	15.09	11.41	7.24	7.77	15.37	3.99	6.93	13.18	21.59	16.08	15.04
Merged-chr19-55383430-1	chr19	55383330	55383530	+	781.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360432, intron 4 of 7)	intron (NM_001360432, intron 4 of 7)	67373.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	1.21	1.01	2.28	0.8	9.0	8.15	10.63	12.67	4.33	6.53	1.0	0.63
Merged-chr4-53157463-3	chr4	53157345	53157545	+	781.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	2450.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.85	14.34	3.99	6.84	8.59	17.87	11.63	9.62	12.98	21.59	8.54	10.02
Merged-chr16-36692642-3	chr16	36692527	36692727	+	781.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1351.0	NM_001285788	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	13.33	10.56	9.13	12.07	9.82	10.35	9.3	6.84	19.28	8.03	12.56	11.28
Merged-chr6-149261106-3	chr6	149261015	149261215	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48299.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	5.25	7.8	10.84	0.4	6.95	18.81	13.29	7.29	18.88	38.16	13.06	10.34
Merged-chr4-145196786-2	chr4	145196689	145196889	+	781.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1784.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.23	3.27	1.14	4.02	8.59	10.03	4.32	7.96	9.24	2.51	15.07	4.39
Merged-chr6-13605458-2	chr6	13605373	13605573	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	2625.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	11.31	11.57	5.7	5.63	7.36	10.03	7.31	7.71	5.9	4.02	3.01	4.7
Merged-chr11-49253227-2	chr11	49253134	49253334	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110148, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	2682.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	11.31	8.05	9.13	8.04	10.64	4.39	5.65	15.03	4.92	4.52	11.05	7.83
Merged-chr17-35829857-4	chr17	35829681	35829881	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	6424.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	3.63	4.78	1.71	4.02	6.55	6.27	3.32	3.36	4.52	9.54	6.03	4.7
Merged-chr17-87286265-2	chr17	87286159	87286359	+	781.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	3373.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.06	2.01	17.11	6.44	13.91	9.09	5.98	12.0	13.18	13.56	11.05	11.59
Merged-chr2-145804776-3	chr2	145804680	145804880	+	781.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	L1MB3|LINE|L1	18664.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.04	14.34	9.13	12.87	9.82	9.72	7.97	19.35	8.26	11.05	13.06	7.83
Merged-chr12-77052930-1	chr12	77052830	77053030	+	781.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90682.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	6.06	3.77	10.27	8.04	8.59	16.31	4.32	10.77	5.51	6.03	9.55	6.89
Merged-chr4-148945853-3	chr4	148945752	148945952	+	781.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027195)	TTS (NM_027195)	6470.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	12.11	7.8	7.42	20.11	20.05	13.17	14.95	14.5	12.39	9.04	11.56	1.88
Merged-chr12-112633892-1	chr12	112633792	112633992	+	781.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-10936.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	4.04	1.76	3.42	0.8	9.41	8.78	1.99	8.8	6.49	4.02	1.0	3.13
Merged-chr19-11803223-3	chr19	11803109	11803309	+	781.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286543, intron 2 of 11)	B3|SINE|B2	16194.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	7.67	10.06	13.12	3.22	22.09	7.84	7.31	11.38	8.85	19.08	13.06	7.83
Merged-chr15-74929040-1	chr15	74928940	74929140	+	781.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26011.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.85	3.77	3.42	2.82	5.73	5.33	5.31	2.86	13.18	20.08	13.06	7.21
Merged-chr13-43774365-2	chr13	43774272	43774472	+	781.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10740.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	1.62	3.52	11.41	4.02	11.86	1.88	8.64	3.5	18.69	7.53	16.08	11.28
Merged-chr11-96888986-2	chr11	96888894	96889094	+	781.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27520.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	7.67	10.06	14.26	11.66	14.32	11.29	5.65	10.63	2.75	1.51	1.51	0.94
Merged-chr15-89140540-2	chr15	89140394	89140594	+	781.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013871, exon 1 of 12)	5' UTR (NM_013871, exon 1 of 12)	209.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	6.46	2.77	2.28	3.22	3.27	2.2	2.66	5.27	4.72	4.02	7.54	5.64
Merged-chr10-117307230-2	chr10	117307128	117307328	+	781.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14360.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.85	8.55	5.13	4.02	9.41	26.65	12.62	7.35	10.82	12.55	20.1	5.95
Merged-chr10-127188726-2	chr10	127188600	127188800	+	781.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358557)	promoter-TSS (NM_001358557)	72.0	NM_001358557	52666.0	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	5.65	4.78	3.99	7.24	11.05	5.02	7.64	5.41	5.7	4.02	8.54	5.33
Merged-chr13-34651091-2	chr13	34650983	34651183	+	781.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1598.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	4.44	3.77	1.14	8.45	7.77	11.6	13.29	18.48	9.83	8.03	9.55	7.83
Merged-chr3-8594064-3	chr3	8593954	8594154	+	781.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33997.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	8.88	9.56	14.26	10.86	11.05	10.66	7.64	20.55	7.47	6.53	19.6	8.14
Merged-chr2-160729955-3	chr2	160729858	160730058	+	781.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1352.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	8.88	9.31	3.42	4.42	12.27	7.84	7.31	6.73	12.19	20.08	3.01	8.14
Merged-chr2-93199070-3	chr2	93198975	93199175	+	781.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025246, intron 6 of 7)	intron (NM_001025246, intron 6 of 7)	11527.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	8.08	7.55	6.28	6.03	7.36	9.72	4.32	6.62	18.29	18.58	10.55	11.9
Merged-chr16-36784950-1	chr16	36784850	36785050	+	781.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021301)	promoter-TSS (NM_021301)	12.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	8.08	5.03	3.99	8.45	11.45	8.15	6.64	8.33	0.98	3.51	3.52	1.57
Merged-chr16-91885226-2	chr16	91885112	91885312	+	781.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	46418.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	10.09	6.54	4.56	6.03	18.41	10.98	3.65	10.12	1.18	1.0	1.51	2.19
Merged-chr19-5801945-5	chr19	5801789	5801989	+	781.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	783.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	15.34	9.56	9.13	5.23	10.23	5.96	3.65	3.31	15.14	12.05	2.01	6.27
Merged-chr10-70097972-2	chr10	70097869	70098069	+	781.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111121, intron 1 of 8)	CpG	848.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	2.42	4.28	8.56	8.45	8.18	10.66	12.29	7.85	10.23	9.54	7.03	5.95
Merged-chr7-31116803-2	chr7	31116707	31116907	+	781.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011322, exon 6 of 6)	3' UTR (NM_011322, exon 6 of 6)	-1481.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.27	10.82	1.71	5.63	7.77	11.29	22.59	14.86	11.21	11.55	14.07	3.76
Merged-chr19-53939555-3	chr19	53939446	53939646	+	781.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-4760.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	4.04	9.56	9.13	5.23	6.55	5.02	6.98	5.27	19.47	7.03	12.06	9.08
Merged-chr10-8866369-1	chr10	8866269	8866469	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	19701.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.02	3.52	7.42	0.4	3.27	9.72	5.31	7.4	1.18	7.53	6.53	3.45
Merged-chr13-111944997-2	chr13	111944914	111945114	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	77078.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.02	3.02	5.7	4.42	11.05	10.66	5.65	7.71	10.03	9.04	6.03	4.39
Merged-chr18-9212200-2	chr18	9212088	9212288	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-668.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	5.25	6.04	11.98	25.74	36.0	21.95	23.92	39.67	6.69	4.52	6.53	4.7
Merged-chr15-6360385-1	chr15	6360285	6360485	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-26363.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.85	7.04	2.85	6.84	6.95	11.29	2.99	6.08	9.05	6.03	9.04	5.01
Merged-chr2-145720915-3	chr2	145720826	145721026	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19731.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	17.77	7.8	3.42	10.05	20.05	21.64	9.3	7.4	17.31	19.08	32.66	10.65
Merged-chrX-143348548-2	chrX	143348450	143348650	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358592, intron 4 of 11)	intron (NM_001358592, intron 4 of 11)	45712.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	2.02	1.01	1.14	2.41	4.91	3.14	7.31	9.22	13.77	10.54	17.59	5.64
Merged-chr10-80033712-1	chr10	80033612	80033812	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5947.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	5.25	5.28	5.7	3.22	5.73	8.47	9.3	9.22	6.88	9.04	5.53	5.01
Merged-chrY-90800740-1	chrY	90800640	90800840	+	781.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	15298.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.81	1.51	0.0	0.0	1.64	0.94	2.66	0.39	17.51	14.56	11.05	11.28
Merged-chrX-169089125-1	chrX	169089025	169089225	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_109847, intron 1 of 14)	intron (NR_109847, intron 1 of 14)	-23753.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	4.85	1.51	3.42	2.41	6.95	6.9	6.64	6.67	7.67	1.0	7.54	3.13
Merged-chr1-165710100-1	chr1	165710000	165710200	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2006.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.04	5.03	7.99	3.62	8.18	3.14	3.99	5.55	3.93	1.0	3.01	4.7
Merged-chr2-167623131-1	chr2	167623031	167623231	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	8874.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	4.85	7.04	25.1	10.86	4.91	5.33	1.99	3.93	7.87	4.02	5.53	4.39
Merged-chrX-170005297-1	chrX	170005197	170005397	+	781.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-26380.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	4.04	3.52	1.14	0.4	3.68	3.45	5.31	4.01	8.65	8.03	9.04	11.28
Merged-chr2-152396351-2	chr2	152396252	152396452	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011438, exon 1 of 1)	3' UTR (NM_011438, exon 1 of 1)	1694.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	27.46	46.53	52.48	26.95	5.73	7.21	3.32	2.69	10.23	1.0	6.53	10.65
Merged-chr7-44055688-2	chr7	44055587	44055787	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020268, exon 3 of 5)	exon (NM_020268, exon 3 of 5)	3397.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	9.69	4.53	10.27	12.87	8.18	5.64	19.6	10.43	0.0	0.0	0.0	0.0
Merged-chr12-110885933-3	chr12	110885838	110886038	+	781.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026048, intron 1 of 4)	B1F1|SINE|Alu	3207.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	8.08	6.29	23.39	10.86	14.73	7.53	9.3	12.0	12.78	6.03	15.58	5.33
Merged-chr13-97510991-2	chr13	97510889	97511089	+	781.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28288.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	9.69	6.79	4.56	8.45	12.27	21.01	21.26	8.69	6.1	4.52	6.03	3.13
Merged-chr11-114933780-3	chr11	114933658	114933858	+	781.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	628.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	8.48	6.29	13.12	10.46	6.55	4.7	7.64	8.97	9.05	6.53	9.04	9.4
Merged-chr11-104001686-3	chr11	104001580	104001780	+	781.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34809.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	12.11	8.55	15.97	6.84	14.73	10.35	11.29	9.25	12.0	9.54	13.06	10.02
Merged-chr10-128743920-3	chr10	128743831	128744031	+	781.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016811, exon 1 of 24)	5' UTR (NM_016811, exon 1 of 24)	145.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	9.29	10.82	3.42	12.07	13.91	5.96	4.32	10.54	7.08	10.54	15.07	7.21
Merged-chr14-19745993-2	chr14	19745897	19746097	+	781.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5260.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	16.96	4.53	9.13	8.04	12.27	2.82	8.64	12.14	8.46	5.02	8.54	6.89
Merged-chr5-64102748-2	chr5	64102648	64102848	+	781.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025700, intron 3 of 13)	ID|SINE|ID	9809.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	6.06	8.55	12.55	10.46	8.18	6.27	16.61	21.67	6.1	8.54	9.55	11.28
Merged-chr7-116040314-2	chr7	116040198	116040398	+	781.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1554.0	NM_001025559	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	11.71	10.31	4.56	8.45	6.95	9.72	11.96	9.56	7.28	3.01	15.58	1.57
Merged-chr2-121442667-3	chr2	121442651	121442851	+	781.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145973)	promoter-TSS (NM_145973)	-150.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	4.85	3.52	14.26	6.03	2.45	4.08	1.33	4.18	6.29	12.05	4.52	5.64
Merged-chr18-74283037-2	chr18	74282928	74283128	+	781.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029424)	promoter-TSS (NR_029424)	-72.0	NM_028948	74453.0	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	4.04	1.76	3.99	0.4	3.68	5.33	4.98	4.46	10.62	18.58	22.61	8.77
Merged-chr18-60748692-3	chr18	60748580	60748780	+	781.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-15.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	8.48	8.55	10.27	10.05	15.55	20.7	16.94	8.5	9.83	15.57	16.08	5.64
Merged-chr7-35127935-2	chr7	35127827	35128027	+	781.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	8634.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.44	6.54	2.85	10.46	8.18	7.21	4.65	10.77	7.47	11.05	17.08	9.08
Merged-chr8-113632827-3	chr8	113632729	113632929	+	781.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2757.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	15.34	13.83	13.69	9.25	4.91	8.78	7.64	14.38	22.82	12.55	11.05	14.72
Merged-chr9-115733343-3	chr9	115733258	115733458	+	781.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-176097.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	6.46	6.04	11.98	12.47	11.45	6.9	7.31	4.74	12.39	13.56	20.1	11.28
Merged-chr8-105516133-3	chr8	105516031	105516231	+	781.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2615.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	8.08	10.31	9.13	9.25	11.86	12.23	0.0	7.6	9.44	8.54	15.58	9.4
Merged-chr2-59522245-3	chr2	59522142	59522342	+	781.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37589.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	12.11	9.56	7.99	11.26	6.95	16.31	17.94	8.61	11.41	10.04	15.58	5.33
Merged-chr9-108474786-2	chr9	108474683	108474883	+	781.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5079.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	19.79	8.55	12.55	18.5	11.05	12.23	4.32	7.21	6.88	16.57	8.54	5.64
Merged-chr14-122633316-3	chr14	122633197	122633397	+	781.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	98969.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.04	2.01	17.11	2.82	11.86	2.51	7.31	6.53	13.18	5.52	8.04	7.52
Merged-chrX-20770991-5	chrX	20770886	20771086	+	781.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	67077.0	NM_145628	236733.0	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	4.04	2.26	1.14	5.23	6.95	7.53	6.31	5.58	4.13	3.51	8.54	3.76
Merged-chr7-121073181-3	chr7	121073052	121073252	+	781.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030691, intron 1 of 5)	B4|SINE|B4	1378.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	11.31	9.81	10.27	3.22	10.64	13.48	8.97	4.32	8.46	10.04	8.54	10.02
Merged-chr14-50971044-2	chr14	50970935	50971135	+	781.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	14894.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	8.08	12.58	12.55	3.22	9.82	4.08	7.97	7.77	5.9	7.53	2.51	3.13
Merged-chr1-171564494-3	chr1	171564401	171564601	+	781.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	MTC-int|LTR|ERVL-MaLR	5308.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	10.5	12.32	8.56	16.09	16.77	28.22	9.97	11.5	12.59	13.05	17.59	7.83
Merged-chr7-4776975-2	chr7	4776871	4777071	+	781.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290423, intron 1 of 4)	CpG	1170.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	8.48	2.52	2.28	8.45	13.5	15.37	4.65	8.41	10.62	8.54	5.02	7.21
Merged-chr5-144267793-2	chr5	144267689	144267889	+	781.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025833, intron 12 of 13)	intron (NM_025833, intron 12 of 13)	-9272.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	7.27	7.04	11.41	10.05	4.09	15.99	1.99	9.84	1.18	1.0	1.0	2.51
Merged-chr14-54713078-3	chr14	54713030	54713230	+	781.1611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-956.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	14.94	5.28	10.27	10.86	7.36	15.05	12.95	11.44	12.39	7.03	8.54	5.33
Merged-chr13-65226437-3	chr13	65226354	65226554	+	781.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-20738.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	13.73	11.57	12.55	9.25	9.0	13.8	7.31	9.2	19.28	25.61	22.11	11.28
Merged-chrX-100775562-3	chrX	100775453	100775653	+	781.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177779, intron 1 of 13)	intron (NM_001177779, intron 1 of 13)	1058.0	NM_001177779	53310.0	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs large MAGUK scaffold protein 3	protein-coding	12.52	6.79	14.83	8.45	7.36	7.53	10.96	17.69	10.23	5.02	10.05	11.28
Merged-chr4-145096976-2	chr4	145096876	145097076	+	781.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 42 of 69)	intron (NM_001276465, intron 42 of 69)	93690.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	7.27	3.52	5.7	21.72	18.0	9.09	18.93	38.47	8.65	9.54	11.56	8.46
Merged-chr10-95557450-3	chr10	95557379	95557579	+	781.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358996, intron 1 of 4)	B2_Mm2|SINE|B2	1842.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	14.54	7.55	6.28	2.01	7.36	11.92	4.98	9.62	10.03	10.54	13.06	7.21
Merged-chr8-122678660-3	chr8	122678489	122678689	+	781.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177289)	promoter-TSS (NM_177289)	-414.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	6.06	4.02	7.42	2.82	4.5	5.64	6.64	3.93	7.47	7.53	6.53	9.4
Merged-chr12-91763984-2	chr12	91763864	91764064	+	781.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	B1_Mur3|SINE|Alu	22472.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	10.5	1.76	10.27	6.44	13.09	8.15	14.95	15.48	6.49	5.02	11.05	6.27
Merged-chr6-37430088-2	chr6	37430003	37430203	+	781.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	12045.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	12.11	4.53	0.57	4.83	9.0	8.47	7.97	17.78	10.42	5.52	11.05	3.13
Merged-chr9-21969462-3	chr9	21969368	21969568	+	781.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5892.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	12.52	8.55	8.56	5.63	8.59	16.62	18.6	12.59	11.8	12.05	11.56	9.4
Merged-chr7-145050900-2	chr7	145050805	145051005	+	781.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110980.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.44	1.76	10.27	8.45	18.82	8.78	6.64	16.82	7.08	11.05	21.61	7.21
Merged-chr7-73593034-3	chr7	73592910	73593110	+	781.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34615.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	17.77	9.56	9.13	7.64	18.0	11.92	8.64	7.82	12.39	7.03	14.57	7.83
Merged-chr9-114691191-2	chr9	114691084	114691284	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	2353.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	5.65	9.56	2.85	5.23	6.95	6.9	4.65	9.03	12.0	5.02	11.05	20.99
Merged-chr11-94069656-1	chr11	94069556	94069756	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025428, intron 4 of 26)	intron (NM_001025428, intron 4 of 26)	25451.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	1.62	0.5	0.0	0.0	3.27	6.27	4.65	7.63	7.28	2.01	4.02	5.95
Merged-chr1-16658975-1	chr1	16658875	16659075	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	1423.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	2.83	3.02	1.14	4.02	4.91	6.59	1.0	6.76	3.54	5.02	2.51	1.88
Merged-chr9-113772143-1	chr9	113772043	113772243	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-21187.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.23	2.77	5.7	8.45	2.86	1.25	6.31	6.03	2.75	1.51	3.52	5.64
Merged-chr6-116460145-2	chr6	116460050	116460250	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1028.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	6.86	5.79	6.85	8.85	5.73	7.53	2.66	9.22	8.26	12.05	9.04	5.33
Merged-chr7-105641920-1	chr7	105641820	105642020	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001360053)	TTS (NM_001360053)	1475.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	2.42	0.75	7.42	7.24	0.82	2.2	2.33	1.43	2.95	7.03	8.04	7.83
Merged-chr9-122861023-1	chr9	122860923	122861123	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359935, intron 2 of 6)	intron (NM_001359935, intron 2 of 6)	4983.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.81	2.77	12.55	1.61	2.05	7.53	1.33	4.35	16.52	9.04	3.52	2.82
Merged-chr12-34692544-1	chr12	34692444	34692644	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-163655.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.44	3.52	10.27	7.24	7.36	2.51	3.65	8.02	0.98	1.0	0.0	2.19
Merged-chr13-91221671-1	chr13	91221571	91221771	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	2316.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	1.62	1.01	7.99	5.63	2.86	2.2	3.65	4.82	8.85	5.52	5.53	9.4
Merged-chr6-46143313-1	chr6	46143213	46143413	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1083252.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.83	2.52	3.99	8.45	4.5	1.25	6.31	7.4	4.13	5.02	6.03	4.39
Merged-chr2-18047538-2	chr2	18047437	18047637	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	912.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	7.27	3.27	10.27	12.07	5.32	4.39	6.31	7.23	5.51	5.02	5.53	5.01
Merged-chr13-112801531-1	chr13	112801431	112801631	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	754.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.25	4.28	5.7	4.02	4.09	4.08	6.31	6.62	9.44	10.54	7.03	10.34
Merged-chr1-170796650-1	chr1	170796550	170796750	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71121.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.81	1.01	0.57	2.82	6.95	2.82	0.0	7.93	6.69	10.54	0.0	4.39
Merged-chr5-74016977-1	chr5	74016877	74017077	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177561, intron 4 of 8)	intron (NM_177561, intron 4 of 8)	51434.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	1.21	2.01	14.83	7.24	4.09	1.88	6.64	5.94	3.15	1.51	5.53	4.7
Merged-chr5-108695026-2	chr5	108694923	108695123	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001164259, exon 2 of 6)	5' UTR (NM_001164259, exon 2 of 6)	794.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	12.11	3.77	5.13	7.24	15.96	10.66	3.65	8.13	10.23	7.53	7.54	5.64
Merged-chr15-50403963-1	chr15	50403863	50404063	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	485086.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.75	0.0	0.0	4.91	7.84	1.66	0.17	1.97	1.51	2.51	2.19
Merged-chr3-15331653-2	chr3	15331554	15331754	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	648.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	2.83	7.29	6.85	7.24	15.55	3.45	15.28	17.47	2.56	2.51	1.51	3.76
Merged-chr4-128698391-1	chr4	128698291	128698491	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9653.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.04	6.04	2.85	4.02	6.55	7.21	6.64	7.12	2.56	3.01	0.5	2.51
Merged-chr15-9455385-2	chr15	9455278	9455478	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029341, intron 1 of 4)	intron (NM_029341, intron 1 of 4)	19350.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	6.06	3.27	0.57	4.02	3.68	2.51	5.65	6.45	11.41	5.52	6.53	9.71
Merged-chr13-14115436-1	chr13	14115336	14115536	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194262, intron 2 of 23)	RMER16|LTR|ERVK	51652.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	3.23	0.25	1.14	0.8	2.05	0.94	8.64	4.77	2.36	2.01	1.0	6.27
Merged-chr5-22519925-1	chr5	22519825	22520025	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011959, intron 11 of 13)	intron (NM_011959, intron 11 of 13)	9105.0	NR_004442	100042049.0	Mm.21724	NR_004442		Gm15421	-	ribosomal protein L22 like 1 pseudogene	pseudo	0.4	4.28	6.85	4.83	3.68	5.96	1.0	10.51	5.51	9.04	8.04	3.76
Merged-chr14-66242472-1	chr14	66242372	66242572	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28648.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.46	3.27	9.7	3.62	11.45	9.41	1.99	4.71	15.14	10.54	5.02	6.58
Merged-chr9-83574858-1	chr9	83574758	83574958	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	MTC|LTR|ERVL-MaLR	26520.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	8.08	5.03	1.14	7.24	3.68	6.27	7.64	8.02	8.65	7.53	9.04	0.94
Merged-chr11-59306949-2	chr11	59306830	59307030	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	0.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	11.71	16.35	2.28	9.25	11.05	8.15	5.65	6.25	7.47	4.02	12.06	3.45
Merged-chr17-34366662-1	chr17	34366562	34366762	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-10470.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	3.23	2.77	3.42	0.8	0.0	0.63	0.33	0.42	12.39	7.03	13.06	7.83
Merged-chr6-108611854-2	chr6	108611749	108611949	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040757, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	11318.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.46	3.02	7.99	8.04	7.36	10.66	8.64	15.9	12.39	6.03	26.63	13.16
Merged-chr11-46848950-2	chr11	46848822	46849022	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38123.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	1.62	7.29	5.13	7.24	7.36	6.9	4.98	7.88	4.72	5.02	4.52	2.82
Merged-chr1-35951265-1	chr1	35951165	35951365	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117135.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.23	2.26	10.27	8.45	6.95	10.98	6.31	10.6	7.28	7.03	6.53	2.19
Merged-chr9-31857852-1	chr9	31857752	31857952	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013800, intron 2 of 3)	intron (NM_013800, intron 2 of 3)	55433.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	2.42	5.28	10.84	6.03	15.14	5.96	9.3	16.79	0.98	3.01	1.0	0.63
Merged-chr3-96488198-1	chr3	96488098	96488298	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-35892.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	1.62	3.02	0.57	0.0	0.0	0.63	0.0	0.0	6.1	14.56	6.03	10.96
Merged-chr15-99449494-2	chr15	99449374	99449574	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	8274.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	4.04	5.53	10.27	2.41	15.96	17.56	0.66	5.13	12.19	4.52	4.02	4.07
Merged-chr5-103628707-1	chr5	103628607	103628807	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	696.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	4.04	4.02	0.0	2.41	10.64	6.27	5.31	8.55	4.33	1.0	6.03	2.82
Merged-chr15-80800902-1	chr15	80800802	80801002	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	2292.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.44	6.54	7.99	7.24	15.55	4.39	4.65	11.58	7.67	15.06	6.03	4.7
Merged-chr8-39610487-1	chr8	39610387	39610587	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 7 of 9)	L1MC2|LINE|L1	32191.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.0	0.5	0.0	4.42	12.27	5.96	6.64	7.93	3.34	3.51	6.53	1.57
Merged-chr1-57429066-1	chr1	57428966	57429166	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22392.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	2.02	2.26	13.12	2.41	4.91	7.21	4.65	7.99	3.93	2.01	8.54	2.51
Merged-chr13-49308422-3	chr13	49308340	49308540	+	780.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	768.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	7.27	4.28	9.7	10.46	14.73	8.15	6.64	9.11	8.65	18.08	17.08	10.96
Merged-chr12-112146398-3	chr12	112146233	112146433	+	780.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001097621, exon 1 of 16)	5' UTR (NM_001097621, exon 1 of 16)	125.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	9.29	8.8	11.98	8.04	10.64	8.78	10.96	6.2	7.67	4.52	5.02	8.14
Merged-chr1-152560977-3	chr1	152560878	152561078	+	780.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64239.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	18.98	16.1	14.83	5.23	6.55	19.13	4.32	4.77	16.72	19.58	9.55	4.7
Merged-chr5-146758117-3	chr5	146758021	146758221	+	780.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	36835.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	10.09	2.77	7.99	10.05	9.41	8.78	8.64	18.87	11.6	6.03	26.13	15.35
Merged-chr6-140489728-2	chr6	140489622	140489822	+	780.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	65623.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	16.56	5.53	3.99	13.27	6.95	5.96	8.64	15.76	6.88	16.57	10.05	3.13
Merged-chr18-23197437-2	chr18	23197351	23197551	+	780.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20145.0	NR_110491	665797.0	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.23	3.52	7.99	7.24	15.14	18.81	17.61	30.25	8.65	8.03	17.59	5.64
Merged-chr2-165888993-3	chr2	165888903	165889103	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4165.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	13.33	8.8	5.7	7.24	13.5	7.84	5.65	7.65	15.14	9.54	9.55	12.22
Merged-chr11-78359710-3	chr11	78359583	78359783	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	12973.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	8.08	4.28	8.56	2.82	7.77	7.21	0.66	7.09	13.96	8.54	3.52	9.71
Merged-chr10-21670440-2	chr10	21670344	21670544	+	780.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20401.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	1.62	4.53	1.71	5.63	8.59	9.09	8.3	7.35	9.64	13.05	16.58	4.39
Merged-chr8-68278485-3	chr8	68278390	68278590	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	1962.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	9.29	20.37	13.69	3.62	8.59	11.6	2.33	4.68	15.93	15.06	9.55	2.19
Merged-chr5-36463026-3	chr5	36462957	36463157	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126490, intron 1 of 1)	intron (NR_126490, intron 1 of 1)	1797.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	11.31	10.31	3.42	6.84	11.45	9.41	7.97	9.56	14.36	7.03	14.57	11.28
Merged-chr17-66219931-3	chr17	66219845	66220045	+	780.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96425.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	11.71	3.77	10.27	11.26	10.64	15.05	9.97	24.36	11.8	5.02	8.54	3.13
Merged-chr1-165211012-3	chr1	165210909	165211109	+	780.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-16571.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	8.88	8.55	9.7	15.28	19.23	17.25	10.3	9.73	7.08	4.02	23.11	8.46
Merged-chr19-55792655-2	chr19	55792555	55792755	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50845.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	11.71	6.79	5.13	2.41	2.86	9.09	6.64	4.79	11.41	5.52	11.05	1.25
Merged-chr1-36070620-2	chr1	36070531	36070731	+	780.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2231.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.06	6.79	10.27	2.41	4.09	10.98	5.31	6.87	9.24	2.01	5.02	4.07
Merged-chr3-98027578-2	chr3	98027491	98027691	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	14053.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.86	4.02	11.98	2.01	15.55	6.59	10.96	12.14	4.33	6.03	13.06	8.14
Merged-chr11-72042391-2	chr11	72042297	72042497	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-105.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	15.34	7.04	7.99	1.21	9.0	9.72	4.65	7.71	13.77	23.1	13.06	7.83
Merged-chr9-37421399-1	chr9	37421299	37421499	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164767, intron 16 of 27)	intron (NM_001164767, intron 16 of 27)	11776.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	3.23	3.27	10.84	6.84	7.36	7.21	5.31	6.5	2.95	4.52	7.54	2.19
Merged-chr11-34026870-3	chr11	34026771	34026971	+	780.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MTB|LTR|ERVL-MaLR	-20057.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	10.5	6.79	23.96	10.46	9.82	10.98	8.3	9.98	13.77	11.05	12.56	4.39
Merged-chr14-51048131-1	chr14	51048031	51048231	+	780.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2032.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	2.83	3.27	7.99	4.02	7.77	3.76	1.99	8.86	3.93	5.52	1.51	1.57
Merged-chr6-114908153-3	chr6	114908051	114908251	+	780.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	13670.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	8.08	5.79	18.25	10.05	11.45	8.15	7.97	10.71	12.59	2.51	15.07	11.59
Merged-chr8-47872523-3	chr8	47872434	47872634	+	780.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 9 of 22)	intron (NM_133791, intron 9 of 22)	48052.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	10.09	2.52	19.4	9.25	16.77	11.6	8.97	14.61	17.9	7.53	16.58	14.41
Merged-chr7-139683876-1	chr7	139683776	139683976	+	780.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-61.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	7.67	2.01	7.99	4.02	9.41	10.03	7.64	8.97	6.49	2.51	5.53	4.39
Merged-chr2-135725650-1	chr2	135725550	135725750	+	780.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355156, intron 1 of 37)	intron (NM_001355156, intron 1 of 37)	-39188.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	2.02	3.02	8.56	4.42	6.95	5.64	9.63	10.63	4.92	2.51	10.55	7.83
Merged-chr7-98720444-2	chr7	98720346	98720546	+	780.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17199.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	4.04	5.53	2.28	5.23	12.68	8.15	1.66	8.61	10.03	11.55	9.55	9.71
Merged-chr18-69346009-3	chr18	69345820	69346020	+	780.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361126)	promoter-TSS (NM_001361126)	199.0	NM_001361127	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.85	3.02	4.56	3.62	4.09	4.7	8.64	4.57	7.67	4.52	6.53	4.07
Merged-chr13-107904652-3	chr13	107904534	107904734	+	780.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14570.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	13.73	10.56	3.99	6.03	8.18	13.48	8.3	10.18	9.44	5.52	9.04	11.59
Merged-chr14-60290539-3	chr14	60290451	60290651	+	780.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	25346.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	12.92	5.79	18.25	15.28	8.59	13.17	4.32	10.4	8.46	9.54	13.06	5.95
Merged-chr5-139344237-2	chr5	139344133	139344333	+	780.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	933.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	6.46	9.06	4.56	4.02	13.91	7.53	5.98	7.68	13.77	12.05	26.13	9.4
Merged-chr19-37604165-2	chr19	37604064	37604264	+	780.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	53746.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	17.77	6.54	9.13	18.1	9.0	8.15	9.97	14.55	4.33	9.54	6.03	6.58
Merged-chr8-25067514-2	chr8	25067427	25067627	+	780.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-28565.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	3.63	5.28	10.84	8.04	11.45	10.66	13.29	21.31	9.44	12.05	12.56	3.13
Merged-chr16-18342877-2	chr16	18342760	18342960	+	780.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	1050.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	9.29	4.78	6.85	9.25	9.41	6.27	6.98	8.44	12.78	3.51	8.04	8.46
Merged-chr17-74434727-3	chr17	74434602	74434802	+	780.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 7 of 8)	intron (NM_001033367, intron 7 of 8)	24406.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	12.11	9.31	11.41	4.83	3.68	9.72	3.65	3.11	12.39	11.05	7.54	4.39
Merged-chr19-55743157-3	chr19	55743064	55743264	+	780.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001331147, exon 3 of 14)	exon (NM_001331147, exon 3 of 14)	1354.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	21.8	9.06	11.98	11.26	10.23	16.31	8.97	4.57	9.83	20.59	12.56	10.96
Merged-chr1-105987261-3	chr1	105987159	105987359	+	780.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	B3A|SINE|B2	3023.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	6.46	9.56	9.13	5.23	6.95	15.68	10.63	8.07	11.8	16.07	11.56	10.02
Merged-chr14-64185569-1	chr14	64185469	64185669	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81246.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	3.63	6.29	4.56	4.42	8.59	4.7	4.32	7.57	5.31	4.52	4.02	7.21
Merged-chr10-18469418-1	chr10	18469318	18469518	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163592)	promoter-TSS (NM_001163592)	-563.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	5.25	3.27	1.14	1.61	1.64	9.09	5.31	7.57	6.29	1.51	4.52	2.51
Merged-chr18-36708471-2	chr18	36708376	36708576	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12551.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.81	4.78	4.56	5.23	8.18	6.9	21.26	11.41	8.65	11.55	15.58	11.28
Merged-chr2-91476814-3	chr2	91476712	91476912	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 10 of 37)	MIRb|SINE|MIR	19281.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.44	9.56	15.4	8.45	13.5	16.62	9.63	14.66	9.83	9.04	11.56	10.96
Merged-chr12-32953041-1	chr12	32952941	32953141	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013635)	promoter-TSS (NM_013635)	748.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	6.86	4.78	3.42	4.83	9.41	5.64	5.98	7.26	5.51	1.0	3.52	8.77
Merged-chr17-33996401-2	chr17	33996301	33996501	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347346, exon 8 of 8)	3' UTR (NM_001347346, exon 8 of 8)	3932.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	19.38	9.56	9.13	3.22	9.82	2.51	1.33	1.6	8.85	9.54	6.53	1.25
Merged-chr4-135679577-2	chr4	135679464	135679664	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6893.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	10.9	17.1	12.55	6.03	9.0	12.86	10.3	5.64	19.28	3.51	5.53	5.95
Merged-chr6-97460653-2	chr6	97460568	97460768	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	Kanga2_a|DNA|TcMar-Tc2	-1382.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.23	8.05	10.27	5.63	2.86	10.66	12.29	7.6	11.21	1.51	4.02	14.41
Merged-chrX-71264098-2	chrX	71263997	71264197	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	intron (NM_001358113, intron 6 of 15)	49023.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	6.46	5.28	12.55	8.85	9.0	12.23	10.3	12.76	6.88	5.52	5.53	5.95
Merged-chr6-67129379-1	chr6	67129279	67129479	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91972.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	6.46	5.53	5.7	4.83	8.59	9.72	7.64	10.35	2.16	4.02	3.52	3.76
Merged-chr16-18406489-2	chr16	18406389	18406589	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007744)	TTS (NM_007744)	7005.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.04	9.81	4.56	15.28	13.09	6.27	4.98	6.93	4.33	9.54	5.53	4.7
Merged-chr2-84887976-1	chr2	84887876	84888076	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1284.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	5.65	5.03	8.56	4.83	4.09	5.64	5.31	9.22	7.08	1.0	4.52	8.14
Merged-chr11-120902614-2	chr11	120902531	120902731	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30241.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.63	4.28	10.84	15.28	30.27	14.74	8.3	16.49	4.92	3.51	10.55	3.13
Merged-chr3-116649541-2	chr3	116649449	116649649	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13128.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	8.48	6.04	3.99	5.23	4.09	8.15	7.97	9.87	15.54	6.03	6.53	7.21
Merged-chr3-122247322-1	chr3	122247222	122247422	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	1765.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	2.42	4.78	1.71	2.01	0.82	6.9	5.98	7.65	6.69	1.0	10.55	3.76
Merged-chr5-86190950-2	chr5	86190851	86191051	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310653, intron 1 of 1)	B3A|SINE|B2	6950.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	5.25	10.82	14.26	16.49	6.14	6.59	5.98	5.61	22.23	17.57	25.12	8.14
Merged-chr11-118362638-2	chr11	118362542	118362742	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7231.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	8.08	7.04	6.28	4.02	13.09	15.68	3.32	13.74	4.92	7.03	7.03	10.02
Merged-chr1-157446554-3	chr1	157446471	157446671	+	780.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-11997.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	13.33	11.57	8.56	19.71	9.0	8.47	6.98	14.55	8.46	8.03	31.15	14.41
Merged-chr11-85811389-3	chr11	85811307	85811507	+	780.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20981.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	8.48	8.55	10.27	15.69	15.55	5.64	7.64	10.46	10.82	1.51	10.05	13.78
Merged-chr16-59559168-3	chr16	59559081	59559281	+	780.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3429.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	6.06	7.8	9.13	8.85	11.86	5.02	8.3	7.99	23.41	22.09	14.57	14.41
Merged-chr7-88998133-3	chr7	88998016	88998216	+	780.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	340671.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	12.11	12.58	2.28	15.69	7.77	8.78	9.63	8.72	8.46	2.51	10.05	5.64
Merged-chr10-30797020-2	chr10	30796926	30797126	+	780.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	MTB_Mm|LTR|ERVL-MaLR	6300.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.06	2.77	9.13	11.66	15.96	13.17	11.29	14.38	4.72	4.02	15.58	3.76
Merged-chr7-99982430-2	chr7	99982335	99982535	+	780.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1977.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	10.5	6.29	14.26	9.65	10.23	13.17	18.93	14.97	10.23	8.03	7.54	5.33
Merged-chr18-65671151-1	chr18	65671051	65671251	+	780.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-27117.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.25	7.04	15.4	4.83	8.59	8.78	13.29	12.84	0.79	5.52	3.01	0.94
Merged-chr19-26853922-3	chr19	26853824	26854024	+	780.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30017.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	7.67	10.82	11.98	15.69	20.86	16.62	9.97	22.09	4.13	21.09	13.57	9.08
Merged-chr9-57862059-3	chr9	57861945	57862145	+	780.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27811.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	8.08	5.53	9.13	8.45	9.41	15.68	5.98	7.68	15.14	24.1	18.09	13.47
Merged-chr10-80117105-3	chr10	80116958	80117158	+	780.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301853, intron 1 of 8)	T-rich|Low_complexity|Low_complexity	1255.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	6.86	8.8	6.85	9.65	11.05	3.45	7.97	10.85	12.39	9.54	13.57	6.27
Merged-chr4-55960230-2	chr4	55960137	55960337	+	780.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-427762.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.83	2.77	15.97	5.23	15.14	29.16	13.62	26.83	9.83	8.03	18.09	5.95
Merged-chr9-47587968-2	chr9	47587882	47588082	+	780.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	57630.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	12.92	10.31	7.99	4.02	15.14	9.41	5.65	7.68	3.34	2.51	3.01	2.82
Merged-chr17-63324246-3	chr17	63324161	63324361	+	780.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-11288.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	6.06	11.32	13.12	12.87	10.64	10.98	5.65	9.73	8.85	10.54	13.06	2.82
Merged-chr14-56689396-1	chr14	56689296	56689496	+	780.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11604.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	7.67	4.53	2.85	4.83	7.36	10.03	9.3	6.45	4.72	6.53	8.04	2.82
Merged-chr4_JH584295_random-1859-1	chr4_JH584295_random	1759	1959	+	780.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GC_rich|Low_complexity|Low_complexity											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	19.87	15.57	14.57	9.71
Merged-chr3-129213903-1	chr3	129213803	129214003	+	780.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001287048)	promoter-TSS (NM_001287048)	-29.0	NM_001287048	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	3.63	3.02	7.99	6.44	10.23	8.15	7.64	14.97	2.56	5.52	7.03	2.82
Merged-chr17-81705392-2	chr17	81705274	81705474	+	780.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33013.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.23	3.27	8.56	5.63	5.32	4.39	8.64	12.34	9.44	2.51	11.56	6.89
Merged-chr8-73289870-3	chr8	73289770	73289970	+	780.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	63670.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	9.29	11.82	13.12	15.28	7.36	7.53	10.96	9.31	14.95	6.53	10.05	11.59
Merged-chr18-51470980-2	chr18	51470872	51471072	+	780.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	353074.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	2.83	3.52	5.7	1.21	4.5	9.72	6.98	14.19	9.83	6.03	7.54	7.52
Merged-chr12-52283796-2	chr12	52283687	52283887	+	780.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 7 of 10)	MTC|LTR|ERVL-MaLR	186041.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	4.44	1.76	2.85	4.83	7.77	2.82	4.98	12.0	9.05	4.52	10.55	5.33
Merged-chr16-52059775-3	chr16	52059683	52059883	+	780.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28234.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	6.86	6.29	6.85	4.83	3.68	7.84	8.3	7.82	16.52	10.54	17.08	5.95
Merged-chr13-41525483-3	chr13	41525374	41525574	+	780.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38114.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.65	7.55	17.11	7.64	13.91	8.15	7.64	14.33	18.69	11.05	20.6	13.78
Merged-chr2-118374053-2	chr2	118373918	118374118	+	780.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201367)	promoter-TSS (NM_201367)	-599.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	2.02	6.29	4.56	3.62	5.32	6.59	2.33	4.29	11.21	9.54	12.06	15.04
Merged-chr5-32610287-3	chr5	32610198	32610398	+	780.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-873.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	13.33	8.8	21.11	10.86	7.36	16.62	5.98	14.69	11.21	12.05	14.07	6.27
Merged-chr3-16004070-1	chr3	16003970	16004170	+	780.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	intron (NM_001081687, intron 1 of 3)	2262.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	4.04	5.03	4.56	7.24	10.23	14.11	5.98	8.64	7.08	9.04	21.1	4.7
Merged-chr4-59455181-3	chr4	59455088	59455288	+	780.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16555.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	8.88	5.53	13.69	9.25	15.96	20.07	12.29	14.64	10.82	16.57	16.08	5.33
Merged-chr2-160375048-3	chr2	160374950	160375150	+	780.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7985.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.48	8.05	10.84	8.85	10.64	7.21	8.3	15.11	13.37	17.07	21.1	10.65
Merged-chr17-31002775-2	chr17	31002677	31002877	+	780.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	48094.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	1.62	6.29	7.42	4.02	13.91	11.6	7.31	7.77	13.37	14.06	13.57	6.27
Merged-chr18-60214449-4	chr18	60214365	60214565	+	780.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	2388.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.81	2.26	4.56	0.0	0.0	0.0	4.32	0.5	8.85	6.53	7.54	7.52
Merged-chr11-67608348-2	chr11	67608258	67608458	+	780.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	11803.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	12.11	6.29	13.69	9.65	0.82	3.14	2.33	4.68	9.83	9.54	7.54	12.53
Merged-chr17-80801519-2	chr17	80801421	80801621	+	780.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73496.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	1.21	2.52	5.7	6.84	4.5	7.21	6.64	8.8	9.64	14.56	8.54	10.96
Merged-chr9-47626067-3	chr9	47625928	47626128	+	780.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	ORR1B2|LTR|ERVL-MaLR	95676.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.83	7.8	7.42	3.62	13.91	8.15	5.98	6.81	8.46	5.52	13.06	11.28
Merged-chr7-63980308-3	chr7	63980180	63980380	+	780.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-41365.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.65	9.06	9.13	10.86	19.64	13.8	6.31	13.57	13.96	9.04	12.06	12.53
Merged-chr4-6376764-2	chr4	6376665	6376865	+	780.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	11085.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.04	2.01	1.14	6.03	11.86	10.03	14.95	16.04	9.64	14.56	6.53	8.46
Merged-chr7-80729881-3	chr7	80729782	80729982	+	780.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 28 of 37)	intron (NM_016721, intron 28 of 37)	-41005.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	14.94	5.28	5.7	11.26	6.55	13.17	9.63	7.09	15.54	8.54	18.09	6.27
Merged-chr17-6795320-1	chr17	6795220	6795420	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12540.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.23	4.53	1.14	12.47	11.45	5.64	3.32	5.16	7.08	8.03	12.56	9.71
Merged-chr17-3558595-2	chr17	3558493	3558693	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146074)	promoter-TSS (NM_146074)	769.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	5.25	2.26	1.71	1.61	5.73	10.03	1.99	3.84	16.13	15.06	3.52	2.51
Merged-chr16-34738878-1	chr16	34738778	34738978	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-46072.0	NM_139300	107589.0	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	2.02	1.26	4.56	1.61	1.64	6.27	2.33	6.5	2.36	6.53	2.51	12.22
Merged-chr9-60744511-1	chr9	60744411	60744611	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	31390.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	3.23	1.51	3.42	0.0	5.73	1.88	5.98	8.38	6.69	7.53	2.51	5.64
Merged-chr7-102567959-2	chr7	102567858	102568058	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2476.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	9.69	3.77	6.85	8.85	15.55	8.15	5.31	11.55	6.1	5.02	10.05	4.7
Merged-chr4-62348337-4	chr4	62348229	62348429	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	12267.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	8.08	5.79	1.14	8.04	8.59	10.98	7.64	7.46	8.85	14.56	6.03	3.76
Merged-chr1-93166036-1	chr1	93165936	93166136	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-2387.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	9.69	1.76	2.28	2.82	5.32	9.72	3.65	7.6	4.72	4.52	4.02	1.25
Merged-chr5-74948762-1	chr5	74948662	74948862	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045866)	promoter-TSS (NR_045866)	-432.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	1.51	1.14	0.0	12.68	7.84	3.65	7.91	4.72	4.52	5.02	3.45
Merged-chr13-45393231-1	chr13	45393131	45393331	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	3489.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.62	3.27	1.71	1.61	1.64	5.64	4.65	5.3	4.52	3.01	1.51	0.63
Merged-chr17-49432562-2	chr17	49432474	49432674	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	4210.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.04	4.02	10.27	2.82	8.59	12.86	17.27	15.59	7.67	10.54	23.11	1.88
Merged-chrX-12139379-1	chrX	12139279	12139479	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	20967.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.48	3.02	4.56	5.63	4.09	4.39	9.97	6.42	4.33	2.01	3.01	2.51
Merged-chr2-157424157-3	chr2	157424038	157424238	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-155.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	13.33	8.05	11.41	8.45	12.68	9.41	9.63	7.57	12.98	12.05	13.57	3.13
Merged-chr14-68695950-1	chr14	68695850	68696050	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40108.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	4.04	2.77	4.56	7.24	11.05	6.9	13.29	6.22	8.46	10.54	17.08	4.07
Merged-chr1-91052371-1	chr1	91052271	91052471	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1073.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.06	3.27	3.42	4.83	2.05	9.72	2.99	6.59	5.9	8.54	6.53	4.39
Merged-chr4-133853679-1	chr4	133853579	133853779	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21052.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	13.73	4.78	6.85	5.63	9.41	16.93	7.97	5.64	0.79	1.51	2.01	1.88
Merged-chr9-104678260-1	chr9	104678160	104678360	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	108777.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.0	1.26	3.42	0.8	0.82	0.0	5.98	7.09	0.0	0.0	1.0	0.63
Merged-chr10-62505564-2	chr10	62505477	62505677	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	2180.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	9.29	6.04	2.28	3.62	8.18	11.6	9.3	6.08	5.31	9.04	5.02	5.95
Merged-chr17-8264818-2	chr17	8264734	8264934	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18979.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	7.27	8.55	3.42	4.02	9.0	5.02	3.99	8.1	4.33	10.04	11.05	4.39
Merged-chr10-93911576-2	chr10	93911477	93911677	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20375.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	6.86	8.05	13.12	10.46	5.73	16.93	6.31	13.15	0.59	4.02	1.51	2.51
Merged-chr3-78314548-2	chr3	78314456	78314656	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	830331.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	2.01	4.56	0.0	4.91	4.08	10.96	16.07	10.23	10.54	14.07	5.01
Merged-chr11-29806477-1	chr11	29806377	29806577	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	19191.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.23	1.01	11.98	4.02	6.55	3.76	15.28	13.18	4.92	7.53	6.03	8.77
Merged-chr6-38939951-2	chr6	38939840	38940040	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	20954.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.25	5.79	2.85	3.22	11.45	14.42	4.32	8.78	14.16	5.52	7.54	8.14
Merged-chr6-97406523-1	chr6	97406423	97406623	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	52763.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.42	3.52	2.28	1.21	10.64	1.88	5.31	6.53	2.95	4.02	3.01	2.51
Merged-chr8-36758678-1	chr8	36758578	36758778	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-25624.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.62	1.51	3.42	3.22	2.45	5.33	7.31	8.66	4.13	3.01	2.51	5.01
Merged-chr11-110727865-1	chr11	110727765	110727965	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-240168.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.81	3.52	5.7	5.23	3.68	3.14	7.31	6.48	1.38	1.51	1.51	0.63
Merged-chr16-56677363-1	chr16	56677263	56677463	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014399, intron 22 of 27)	intron (NM_001014399, intron 22 of 27)	40087.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	4.04	3.02	4.56	8.45	1.64	2.2	5.31	7.01	1.57	3.51	1.51	1.25
Merged-chr1-142688970-1	chr1	142688870	142689070	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-951727.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.81	1.26	0.57	2.01	9.0	4.7	6.98	8.64	2.56	3.01	1.51	0.63
Merged-chr15-66866072-2	chr15	66865981	66866181	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25312.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	6.46	10.82	10.84	7.64	1.64	4.7	6.98	6.79	6.88	7.03	9.04	9.4
Merged-chr9-90265962-1	chr9	90265862	90266062	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4807.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.23	2.01	5.13	5.63	3.68	4.7	8.64	11.3	7.08	8.03	6.53	5.64
Merged-chr9-90263082-1	chr9	90262982	90263182	+	780.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	7687.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	10.5	4.02	0.0	1.61	10.23	5.02	1.66	5.24	13.77	14.06	16.58	6.89
Merged-chr3-107098885-3	chr3	107098788	107098988	+	779.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2679.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	9.29	9.06	11.41	12.07	8.18	13.17	4.98	12.5	13.57	24.6	5.53	12.84
Merged-chr7-98953843-3	chr7	98953747	98953947	+	779.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	115002.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.08	14.09	9.7	27.75	11.45	25.09	15.28	33.64	9.44	10.04	17.08	14.41
Merged-chr3-144607264-2	chr3	144607163	144607363	+	779.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	36836.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	9.69	5.79	11.41	8.85	14.32	11.29	19.93	19.09	2.56	12.05	12.56	3.45
Merged-chr4-145240343-3	chr4	145240229	145240429	+	779.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	10.09	7.29	15.4	12.87	17.18	10.03	5.65	12.06	12.78	9.04	17.59	6.27
Merged-chr2-153122015-2	chr2	153121887	153122087	+	779.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	tRNA-Ala-GCY_|tRNA|tRNA	13519.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.27	3.52	6.28	5.23	3.27	6.59	3.32	11.61	9.64	13.05	10.55	5.64
Merged-chr14-57797571-3	chr14	57797459	57797659	+	779.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-630.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	6.46	18.11	9.13	10.46	8.18	8.47	8.3	4.18	16.72	18.08	11.56	5.95
Merged-chr9-7227496-3	chr9	7227391	7227591	+	779.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	42986.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	11.71	13.58	4.56	4.02	12.27	9.41	6.64	3.42	12.98	12.05	13.57	2.19
Merged-chr17-80497356-3	chr17	80497263	80497463	+	779.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16910.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	8.08	12.32	2.28	6.84	14.32	14.74	10.63	7.29	16.72	10.04	25.12	11.59
Merged-chr11-115428094-2	chr11	115428006	115428206	+	779.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183285, intron 4 of 5)	intron (NM_183285, intron 4 of 5)	7980.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	19.79	8.3	9.13	5.63	8.59	11.29	7.97	8.1	5.9	6.53	8.04	5.33
Merged-chr4-59550429-3	chr4	59550318	59550518	+	779.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1054.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	14.54	10.82	18.25	6.84	9.41	11.29	7.64	10.35	10.23	3.51	12.06	7.83
Merged-chr13-44819622-2	chr13	44819510	44819710	+	779.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	88339.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	7.27	9.81	7.42	9.65	8.18	8.15	7.31	12.06	5.9	7.03	8.04	5.64
Merged-chr15-41350074-3	chr15	41349975	41350175	+	779.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97407.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	9.69	9.81	7.42	22.12	27.41	24.15	37.2	43.23	9.44	8.54	12.06	10.96
Merged-chr10-19587836-3	chr10	19587744	19587944	+	779.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-4105.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	14.94	7.29	12.55	12.87	5.73	6.9	11.96	9.87	13.96	11.55	17.59	7.52
Merged-chr14-32077259-3	chr14	32077168	32077368	+	779.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8018.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	8.88	10.82	1.14	6.03	7.36	13.8	9.3	4.82	5.11	4.52	6.03	8.46
Merged-chr13-96593778-2	chr13	96593680	96593880	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023420, intron 3 of 17)	intron (NM_023420, intron 3 of 17)	51045.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	12.11	7.04	6.85	8.45	3.27	19.13	11.63	11.41	11.6	4.52	9.55	6.89
Merged-chr14-34363908-2	chr14	34363807	34364007	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8514.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	2.42	3.52	1.71	2.82	9.82	17.87	6.98	11.27	7.47	12.05	19.09	5.33
Merged-chr2-21202043-2	chr2	21201946	21202146	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	3319.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	2.83	7.04	6.28	7.24	13.5	5.33	3.65	9.36	7.47	9.54	10.55	15.98
Merged-chr16-16560309-1	chr16	16560209	16560409	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_139232)	promoter-TSS (NM_139232)	-90.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	2.42	1.01	0.57	3.22	7.77	10.98	5.31	8.1	3.54	3.51	2.01	1.57
Merged-chr1-191184385-3	chr1	191184257	191184457	+	779.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-835	-1024.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.85	3.52	5.13	2.01	7.36	6.9	4.65	5.97	7.08	6.03	13.57	4.07
Merged-chr8-106136733-2	chr8	106136634	106136834	+	779.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_176838, exon 1 of 15)	exon (NM_176838, exon 1 of 15)	240.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	9.29	4.78	1.71	7.64	6.95	5.33	1.33	5.3	5.11	3.01	6.03	5.64
Merged-chr1-143853952-2	chr1	143853854	143854054	+	779.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76676.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	6.46	10.31	7.42	17.7	2.86	5.64	10.96	13.74	3.34	5.52	3.01	5.64
Merged-chr9-71140333-3	chr9	71140256	71140456	+	779.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	22277.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	10.09	6.29	19.4	19.71	9.0	6.59	12.29	17.22	13.96	8.54	18.09	6.89
Merged-chr2-167694608-5	chr2	167694576	167694776	+	779.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	3499.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.48	6.54	12.55	10.05	7.36	6.27	1.33	6.31	8.26	9.54	5.53	7.21
Merged-chr1-193191939-2	chr1	193191828	193192028	+	779.724976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153137, intron 8 of 15)	intron (NM_153137, intron 8 of 15)	9618.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	9.69	21.13	15.4	8.85	0.82	0.0	0.33	0.36	17.31	23.1	26.13	9.08
Merged-chr14-75728827-1	chr14	75728727	75728927	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177381, intron 13 of 22)	intron (NM_177381, intron 13 of 22)	25666.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	9.29	9.31	10.27	13.27	2.86	0.63	6.31	3.95	4.92	8.03	8.04	4.7
Merged-chr15-101141272-3	chr15	101141192	101141392	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277255, intron 11 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	12770.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	9.29	6.29	3.99	10.86	4.5	6.27	4.32	9.64	28.32	19.58	25.63	9.4
Merged-chr12-55473510-1	chr12	55473410	55473610	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	19137.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	9.29	11.32	15.97	3.62	9.41	15.37	12.95	15.25	13.77	7.53	8.54	1.25
Merged-chr4-129188996-3	chr4	129188900	129189100	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134151)	promoter-TSS (NM_134151)	542.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	11.71	16.6	9.7	7.24	8.18	4.7	7.31	5.33	16.33	11.55	22.11	8.77
Merged-chr19-28612446-1	chr19	28612346	28612546	+	779.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-65778.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	2.02	1.26	4.56	4.83	5.73	8.78	5.31	13.26	6.1	2.01	1.51	4.7
Merged-chr5-76705938-1	chr5	76705838	76706038	+	779.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114224.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	3.23	0.5	3.99	0.8	2.86	9.41	2.66	5.07	12.98	3.51	15.07	9.08
Merged-chrX-121232574-1	chrX	121232474	121232674	+	779.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-919348.0	NM_001281531	624957.0		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	2.42	2.01	7.99	6.44	8.59	7.84	6.98	12.93	0.0	0.5	0.5	0.0
Merged-chr15-66680136-3	chr15	66680036	66680236	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9366.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	5.65	17.36	12.55	15.69	11.05	6.59	6.64	17.1	7.28	6.03	10.05	5.33
Merged-chr14-101652570-1	chr14	101652470	101652670	+	779.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1397.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	6.86	10.31	5.7	3.22	4.91	10.03	4.65	8.83	9.44	7.53	2.51	4.07
Merged-chr4-102499090-3	chr4	102499012	102499212	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177983, intron 4 of 5)	intron (NM_001177983, intron 4 of 5)	-70948.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.04	9.56	4.56	6.84	5.32	10.35	10.3	10.68	21.24	12.55	14.57	14.1
Merged-chr1-91299960-3	chr1	91299954	91300154	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	1716.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.81	6.54	4.56	0.0	7.36	2.51	15.61	6.62	5.7	4.02	3.01	10.65
Merged-chr12-85228630-2	chr12	85228502	85228702	+	779.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9121.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	5.25	4.28	9.7	13.27	6.14	4.7	8.64	8.24	5.7	3.01	4.52	3.45
Merged-chr3-96883627-3	chr3	96883524	96883724	+	779.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026229, intron 7 of 13)	intron (NM_026229, intron 7 of 13)	21674.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	10.09	8.55	5.13	18.9	3.27	6.27	6.98	13.04	17.51	12.05	16.08	10.65
Merged-chr1-138620200-3	chr1	138620106	138620306	+	779.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	-449.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	8.48	11.32	5.7	10.46	9.0	12.86	9.3	9.31	16.33	18.08	13.06	9.08
Merged-chr5-136642387-1	chr5	136642287	136642487	+	779.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50759.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	3.23	3.02	5.13	1.21	11.45	14.11	6.98	5.69	7.67	5.02	6.53	5.64
Merged-chr3-109478612-5	chr3	109478592	109478792	+	779.59668	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95315.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	7.67	8.3	5.13	4.83	7.77	8.15	9.3	5.83	13.37	6.53	7.54	3.13
Merged-chr4-86943512-2	chr4	86943398	86943598	+	779.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	69084.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.25	7.04	6.85	10.05	16.77	13.48	8.64	11.75	0.0	0.0	0.0	2.51
Merged-chr16-19985514-3	chr16	19985417	19985617	+	779.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2468.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.23	9.31	33.66	8.85	18.0	13.8	17.94	11.92	10.82	13.05	8.54	10.34
Merged-chr16-33177856-3	chr16	33177744	33177944	+	779.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7227.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	14.94	5.53	14.26	6.84	6.55	12.86	3.65	5.66	24.59	10.04	16.58	14.1
Merged-chr5-103706228-3	chr5	103706133	103706333	+	779.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47929.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	8.48	5.53	11.41	7.24	15.14	6.27	3.32	10.63	15.54	10.04	30.65	13.78
Merged-chr17-29414787-3	chr17	29414677	29414877	+	779.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	53863.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	9.29	14.09	14.26	8.04	10.64	19.76	4.65	7.32	24.0	15.57	33.67	6.89
Merged-chr9-3199822-2	chr9	3199713	3199913	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027988)	promoter-TSS (NR_027988)	0.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	3.23	6.29	12.55	16.49	23.73	26.34	12.62	15.7	3.34	2.01	1.0	4.7
Merged-chr4-43672285-2	chr4	43672174	43672374	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	3303.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	6.06	4.28	6.85	6.44	11.05	3.45	3.32	10.63	11.21	6.03	8.54	8.77
Merged-chr8-122436841-3	chr8	122436798	122436998	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028354, intron 8 of 10)	intron (NR_028354, intron 8 of 10)	-3958.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	7.67	4.78	11.98	1.21	11.45	9.72	13.29	6.42	11.6	9.54	8.04	5.33
Merged-chr1-9573349-1	chr1	9573249	9573449	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357376, intron 12 of 12)	intron (NM_001357376, intron 12 of 12)	25401.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	8.48	3.52	7.99	6.84	3.68	9.72	5.31	6.81	3.93	2.51	2.51	2.51
Merged-chr18-60989265-2	chr18	60989163	60989363	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24936.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	14.54	10.82	7.99	0.8	4.09	12.23	1.0	8.19	5.11	11.05	4.52	1.57
Merged-chr8-39308793-2	chr8	39308715	39308915	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10835.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	4.44	4.02	10.84	10.86	4.09	10.98	3.32	14.86	1.18	0.0	0.0	0.0
Merged-chr17-8905690-2	chr17	8905594	8905794	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55709.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.65	3.02	0.0	13.67	9.41	5.33	10.3	17.19	8.85	6.53	10.55	4.07
Merged-chr13-67060370-2	chr13	67060256	67060456	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166218, intron 1 of 3)	Lx8|LINE|L1	814.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	2.02	1.76	3.42	4.42	3.27	2.51	4.65	3.95	16.33	17.57	23.11	12.22
Merged-chr1-77514723-2	chr1	77514624	77514824	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 1 of 17)	CpG	364.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	4.44	5.03	9.13	5.63	9.41	10.35	12.29	9.14	6.49	6.53	12.56	3.45
Merged-chr7-83581089-1	chr7	83580989	83581189	+	779.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3842.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.23	1.26	6.28	3.22	0.0	1.25	0.0	2.69	7.87	5.02	19.09	7.21
Merged-chr16-76409541-1	chr16	76409441	76409641	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35714.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.04	2.26	1.14	2.41	6.14	4.08	7.64	10.23	5.31	17.07	8.04	5.95
Merged-chr14-47445558-2	chr14	47445452	47445652	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27009.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	2.83	5.03	13.69	10.86	4.91	11.29	7.31	9.45	1.57	2.01	7.54	2.19
Merged-chr3-27614302-2	chr3	27614208	27614408	+	779.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-29313.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	5.65	5.28	17.11	4.42	7.36	7.21	7.31	10.99	15.93	11.05	12.06	9.71
Merged-chr2-131510062-2	chr2	131509963	131510163	+	779.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	18201.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	2.42	3.52	4.56	2.41	9.82	6.59	5.65	4.99	5.9	8.03	6.03	5.64
Merged-chr9-51044842-3	chr9	51044735	51044935	+	779.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	32259.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	17.36	13.58	9.7	10.05	13.91	16.93	13.62	10.04	13.18	10.04	11.56	13.78
Merged-chr12-69986406-3	chr12	69986308	69986508	+	779.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	594.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	10.09	8.8	4.56	4.83	2.86	13.17	4.32	5.3	10.82	7.03	9.55	3.76
Merged-chr4-53117803-3	chr4	53117707	53117907	+	779.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	42088.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.27	8.05	17.11	10.46	11.45	10.66	5.98	12.62	13.77	11.55	26.13	12.53
Merged-chr2-32494632-3	chr2	32494532	32494732	+	779.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-40727.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	10.5	4.78	14.83	8.45	17.18	14.11	7.64	16.88	12.98	12.55	14.07	12.53
Merged-chr5-24166289-3	chr5	24166188	24166388	+	779.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153092, intron 1 of 6)	RMER6A|LTR|ERVK	1325.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	13.33	6.04	14.83	20.51	10.64	12.86	4.65	8.55	27.93	14.06	21.61	16.92
Merged-chr2-11500789-2	chr2	11500695	11500895	+	779.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1295.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.04	5.53	6.85	3.62	13.09	11.92	9.63	14.27	9.64	7.03	12.56	4.7
Merged-chr19-53449370-2	chr19	53449284	53449484	+	779.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	15412.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	7.27	6.54	10.84	6.44	23.32	20.38	8.97	20.19	1.97	1.0	3.01	0.94
Merged-chr13-83649957-2	chr13	83649799	83649999	+	779.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347576, intron 6 of 10)	intron (NM_001347576, intron 6 of 10)	-71482.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	2.83	6.04	11.41	4.02	3.68	2.82	3.32	7.26	0.98	4.02	1.51	2.51
Merged-chr7-143107182-6	chr7	143107165	143107365	+	779.402771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008434)	promoter-TSS (NM_008434)	11.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	11.31	10.56	10.84	5.63	11.45	1.88	7.31	5.58	11.21	11.05	14.57	7.52
Merged-chr2-72384361-3	chr2	72384252	72384452	+	779.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 9 of 19)	intron (NM_023057, intron 9 of 19)	-91867.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	6.86	10.56	9.7	8.45	12.27	5.96	2.33	10.71	18.69	12.05	15.58	14.1
Merged-chr15-59951129-3	chr15	59951062	59951262	+	779.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65456.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	6.46	8.8	18.83	7.64	16.36	6.27	9.97	10.6	11.6	6.53	19.6	9.71
Merged-chr13-52530774-3	chr13	52530662	52530862	+	779.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024474)	promoter-TSS (NM_001024474)	74.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	12.92	5.53	11.41	13.67	16.36	14.42	10.63	10.49	8.85	5.02	10.55	7.83
Merged-chr5-53662655-2	chr5	53662563	53662763	+	779.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	35925.0	NR_024201	19866.0		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	2.02	4.28	17.68	10.46	5.32	7.53	7.97	6.31	16.92	12.05	10.05	14.72
Merged-chr11-76993110-3	chr11	76993019	76993219	+	779.3388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5478.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	11.71	12.83	12.55	7.24	10.64	26.97	11.63	7.21	17.51	9.54	14.57	7.21
Merged-chr16-14362876-2	chr16	14362757	14362957	+	779.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	1299.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	12.52	10.56	4.56	4.83	10.23	6.59	4.32	5.38	13.57	12.55	16.58	3.13
Merged-chr12-102720948-2	chr12	102720837	102721037	+	779.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16068.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	8.08	15.34	11.41	2.01	11.45	12.54	8.64	7.35	9.44	2.01	6.03	4.39
Merged-chr11-95417479-3	chr11	95417382	95417582	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	3399.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	10.9	13.58	22.25	4.02	11.86	10.98	1.33	7.65	6.88	15.57	10.55	11.9
Merged-chr7-46917961-3	chr7	46917893	46918093	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021884, intron 1 of 9)	L2a|LINE|L2	1976.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	12.11	7.29	18.25	27.35	12.68	2.2	2.33	12.76	10.62	7.03	7.54	8.14
Merged-chr2-34749916-3	chr2	34749822	34750022	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	5310.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	12.92	3.77	12.55	7.24	11.05	8.78	3.65	10.54	9.64	6.03	12.06	3.45
Merged-chr9-59548050-3	chr9	59547929	59548129	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	L2c|LINE|L2	8489.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	20.59	5.53	13.69	7.64	20.05	12.54	5.65	9.76	16.92	9.04	9.04	4.07
Merged-chr8-8441170-1	chr8	8441070	8441270	+	779.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	219603.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.21	4.02	0.0	2.41	7.36	8.47	10.3	11.44	3.74	2.01	9.55	7.52
Merged-chr2-167367973-3	chr2	167367893	167368093	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18815.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	8.88	6.29	4.56	6.03	16.77	19.13	10.63	15.22	17.11	10.54	10.55	10.34
Merged-chr4-128924357-3	chr4	128924256	128924456	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38099.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	11.71	12.83	13.12	5.63	15.55	14.11	2.99	8.69	13.57	15.06	10.05	7.52
Merged-chr4-66830618-3	chr4	66830416	66830616	+	779.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021297, intron 1 of 2)	Lx2|LINE|L1	2965.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	2.42	0.5	4.56	2.41	4.5	3.76	4.32	1.21	5.7	4.02	2.01	1.88
Merged-chr5-121718646-3	chr5	121718561	121718761	+	779.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	7052.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	5.65	9.06	13.12	6.44	11.45	28.54	9.3	16.09	12.19	12.05	12.56	9.08
Merged-chrX-78483245-1	chrX	78483145	78483345	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027322, intron 3 of 3)	intron (NM_027322, intron 3 of 3)	100560.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	4.04	4.53	1.71	6.84	6.95	5.96	10.96	7.12	2.16	3.51	4.52	1.88
Merged-chr14-73170109-2	chr14	73170011	73170211	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27326.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.04	1.51	3.42	1.61	9.41	6.59	4.32	10.49	7.87	4.52	12.56	3.13
Merged-chr12-8345034-1	chr12	8344934	8345134	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31601.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	4.04	3.02	5.13	9.25	7.36	4.7	8.64	11.97	8.46	11.05	5.02	2.19
Merged-chr10-46012173-2	chr10	46012098	46012298	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	204494.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	7.67	4.78	5.7	4.83	4.91	4.08	4.65	8.05	5.7	5.52	7.54	5.95
Merged-chr11-103987581-3	chr11	103987457	103987657	+	779.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20686.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	15.75	14.34	9.13	11.66	12.68	17.87	4.98	5.75	23.6	22.59	18.09	8.14
Merged-chr7-98355457-3	chr7	98355352	98355552	+	779.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	5836.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	8.48	9.81	5.7	8.04	15.14	7.21	11.29	14.24	10.62	7.03	12.56	8.46
Merged-chr11-50228847-3	chr11	50228762	50228962	+	779.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-3383.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	12.11	8.55	6.85	9.25	15.14	8.15	6.64	8.72	9.83	13.05	11.56	6.58
Merged-chr9-45092984-1	chr9	45092884	45093084	+	779.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 5 of 10)	intron (NM_001005421, intron 5 of 10)	13801.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	4.85	1.51	2.28	3.62	5.73	5.96	6.64	9.53	0.39	1.0	1.0	0.31
Merged-chr19-29501171-4	chr19	29501044	29501244	+	779.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	20843.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.48	6.29	5.13	4.02	4.09	4.39	5.65	5.3	7.67	4.52	12.06	8.14
Merged-chr10-10474459-3	chr10	10474380	10474580	+	779.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-2166.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	14.13	4.53	18.83	13.67	9.41	9.09	8.64	9.25	23.8	14.06	8.54	7.52
Merged-chr16-20088005-3	chr16	20087912	20088112	+	779.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9542.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	11.31	1.76	7.42	8.85	11.86	8.78	3.65	8.55	18.88	12.05	15.58	7.83
Merged-chr7-24950487-2	chr7	24950393	24950593	+	779.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19582.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	5.25	7.8	5.7	5.23	10.23	10.03	4.32	8.69	15.14	20.59	12.56	9.4
Merged-chr9-78022401-2	chr9	78022297	78022497	+	779.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-29561.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	2.02	4.78	0.0	3.22	3.27	11.92	13.95	8.58	10.82	15.06	12.06	5.95
Merged-chr17-33563334-3	chr17	33563219	33563419	+	779.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	7612.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.06	8.3	21.68	12.07	8.59	13.8	8.97	11.89	10.23	13.56	18.09	11.28
Merged-chr3-51396663-3	chr3	51396583	51396783	+	779.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026358)	promoter-TSS (NM_026358)	-136.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	10.9	12.32	10.27	18.5	9.0	13.48	17.61	11.02	6.49	9.04	13.06	11.28
Merged-chr5-75871302-3	chr5	75871232	75871432	+	779.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107096.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	19.38	10.82	14.83	9.65	22.91	14.42	8.97	21.64	8.85	7.03	7.54	7.52
Merged-chr6-122892654-2	chr6	122892548	122892748	+	779.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18091.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	4.44	4.53	6.85	3.62	11.05	6.59	5.98	5.8	13.77	11.55	16.08	8.77
Merged-chr11-21377736-2	chr11	21377653	21377853	+	779.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6486.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	12.11	5.28	8.56	5.23	2.05	2.51	2.99	2.02	14.95	23.6	15.58	9.71
Merged-chr19-5599391-2	chr19	5599297	5599497	+	779.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2476.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.23	8.3	11.41	17.29	14.73	10.35	10.63	19.37	0.79	0.5	0.0	0.31
Merged-chr5-21545483-3	chr5	21545389	21545589	+	779.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	1962.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	18.57	15.34	25.67	9.25	9.82	7.21	7.97	8.13	11.6	7.53	15.58	4.7
Merged-chrX-12079398-3	chrX	12079261	12079461	+	779.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	1192.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	9.69	8.05	5.13	5.23	11.86	20.07	5.65	8.36	12.0	9.04	8.54	4.39
Merged-chr2-131767645-3	chr2	131767542	131767742	+	779.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80014.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	8.08	13.33	24.53	17.29	7.36	6.59	16.28	23.1	5.51	4.52	16.08	15.04
Merged-chr11-96874246-1	chr11	96874146	96874346	+	779.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23853.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.4	0.0	0.0	0.0	0.41	0.0	0.0	0.0	3.74	2.51	4.52	1.25
Merged-chr2-167419383-3	chr2	167419276	167419476	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2334.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	6.46	10.06	1.14	3.62	7.77	11.92	3.65	5.33	24.59	18.58	19.6	5.95
Merged-chr18-44662194-2	chr18	44662085	44662285	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085374)	promoter-TSS (NM_001085374)	81.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	8.08	9.56	7.99	17.29	7.77	5.96	9.3	11.19	3.15	2.51	2.51	3.45
Merged-chr3-107953523-1	chr3	107953423	107953623	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9774.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.81	3.52	1.14	0.8	2.45	10.66	1.0	7.09	4.72	4.02	4.02	5.95
Merged-chrX-159757005-1	chrX	159756905	159757105	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	L1MB4|LINE|L1	48404.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	7.27	4.02	5.7	1.61	7.36	9.09	14.95	14.89	7.28	4.52	4.52	3.76
Merged-chr10-72655399-2	chr10	72655287	72655487	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293683, intron 1 of 7)	intron (NM_001293683, intron 1 of 7)	541.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	5.65	3.77	2.28	1.61	12.68	10.35	6.98	7.49	12.98	18.58	5.02	7.52
Merged-chr10-91188130-2	chr10	91188030	91188230	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16511.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	9.29	5.79	3.42	8.85	14.32	15.05	2.66	9.36	17.9	8.03	9.55	6.89
Merged-chr6-143373924-1	chr6	143373824	143374024	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	128036.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	4.04	3.02	7.42	1.21	5.32	1.88	8.97	4.82	5.7	9.04	5.53	2.19
Merged-chr3-148419812-1	chr3	148419712	148419912	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	534823.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.04	1.76	3.99	4.02	3.27	3.45	11.63	5.41	2.36	7.03	6.53	3.76
Merged-chr6-38355519-1	chr6	38355419	38355619	+	779.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347122)	promoter-TSS (NM_001347122)	-916.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	6.46	2.77	5.13	2.41	6.55	6.27	0.33	3.08	9.44	3.51	5.02	1.57
Merged-chr14-105018146-1	chr14	105018046	105018246	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	96530.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	6.86	1.26	5.13	10.86	6.95	5.64	14.95	11.72	0.59	1.51	2.51	9.08
Merged-chr13-34994661-2	chr13	34994570	34994770	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-526.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	6.06	12.58	2.85	12.87	7.36	5.64	4.98	6.98	8.65	5.52	15.07	3.13
Merged-chr12-102747782-1	chr12	102747682	102747882	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4022.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	8.08	19.12	7.99	9.65	7.36	5.02	9.63	11.52	16.92	7.03	7.03	5.64
Merged-chr14-57664488-1	chr14	57664388	57664588	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020506, intron 1 of 22)	intron (NM_020506, intron 1 of 22)	468.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	6.86	13.83	10.27	10.46	6.14	1.57	8.97	4.85	7.08	5.52	12.06	5.64
Merged-chr8-71519210-3	chr8	71519131	71519331	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7462.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	14.13	13.58	7.42	6.84	6.14	14.74	3.65	4.29	14.95	13.05	16.08	3.45
Merged-chr7-83568270-2	chr7	83568170	83568370	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16661.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	7.27	4.28	7.42	5.23	1.23	10.98	3.32	7.18	10.82	12.55	13.06	16.6
Merged-chr11-16948990-1	chr11	16948890	16949090	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110421, intron 2 of 5)	intron (NR_110421, intron 2 of 5)	2292.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	3.63	5.28	2.28	4.02	4.91	7.53	5.31	8.13	14.16	3.01	10.05	5.64
Merged-chr18-23604075-1	chr18	23603975	23604175	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010087, exon 12 of 12)	3' UTR (NM_010087, exon 12 of 12)	106593.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	3.42	0.0	3.68	3.14	6.64	7.37	2.95	2.01	3.01	3.76
Merged-chr6-39257098-1	chr6	39256998	39257198	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50325.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.81	3.27	3.42	1.61	6.95	2.51	3.99	9.7	3.34	5.52	3.01	4.7
Merged-chr13-60613764-1	chr13	60613664	60613864	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	11553.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.46	2.01	11.41	4.42	10.23	7.84	5.65	9.95	3.74	1.0	2.01	7.83
Merged-chr6-48444993-1	chr6	48444893	48445093	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	97.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	10.5	6.04	4.56	7.24	7.36	5.33	15.94	9.73	4.72	13.05	8.54	8.77
Merged-chr3-148221627-1	chr3	148221527	148221727	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	733008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.04	7.55	3.42	0.4	8.59	6.59	5.98	5.36	3.15	3.01	6.03	3.76
Merged-chr2-113911366-1	chr2	113911266	113911466	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62705.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	4.04	2.26	10.84	3.62	4.09	7.53	9.3	8.36	0.0	0.5	1.0	2.51
Merged-chr1-166802153-2	chr1	166802065	166802265	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120320.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.81	2.77	2.85	7.64	8.18	10.03	9.63	16.07	9.05	8.54	17.08	10.96
Merged-chr8-85513409-3	chr8	85513273	85513473	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 6 of 11)	MER5A|DNA|hAT-Charlie	20756.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.04	5.28	14.83	10.46	8.18	5.33	20.93	15.2	1.97	3.01	17.08	7.21
Merged-chr6-72145566-1	chr6	72145466	72145666	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-22369.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.42	0.25	2.28	4.02	2.45	1.57	4.98	5.66	4.52	5.52	3.01	8.14
Merged-chr5-74820556-1	chr5	74820456	74820656	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117653.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.81	0.75	4.56	3.62	6.95	4.08	9.3	16.32	0.39	0.0	0.0	0.94
Merged-chr11-23211244-1	chr11	23211144	23211344	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44797.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	3.23	4.53	5.7	4.42	12.68	14.42	8.97	4.85	12.98	2.51	9.04	7.21
Merged-chr2-59541706-1	chr2	59541606	59541806	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57053.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	3.23	2.52	2.28	0.8	3.27	8.78	3.32	7.32	3.34	4.02	8.54	1.25
Merged-chr8-4140251-3	chr8	4140150	4140350	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5514.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	11.31	9.31	6.85	8.04	5.32	3.76	4.32	4.65	15.74	19.58	22.61	10.65
Merged-chr2-148877586-2	chr2	148877478	148877678	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2066.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	5.65	3.02	7.42	7.24	5.32	4.7	12.62	16.46	8.65	5.52	7.54	5.95
Merged-chr13-20305867-1	chr13	20305767	20305967	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-167123.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.25	0.25	10.27	6.84	2.45	4.39	5.65	4.88	3.15	3.51	7.03	6.89
Merged-chr14-33232225-1	chr14	33232125	33232325	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	15402.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.81	3.52	2.85	5.23	11.45	3.14	4.65	7.68	3.93	3.51	6.03	4.39
Merged-chr19-21948194-1	chr19	21948094	21948294	+	779.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	169854.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.81	2.01	0.0	0.0	1.64	0.31	2.33	0.81	28.52	18.08	13.06	3.13
Merged-chr10-111011065-1	chr10	111010965	111011165	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-999.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.63	6.79	3.42	1.61	6.95	3.14	2.99	7.37	5.31	2.51	10.05	4.39
Merged-chr5-96949350-1	chr5	96949250	96949450	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	28078.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.62	1.01	5.7	2.41	10.64	1.88	7.97	3.31	4.52	3.51	4.02	0.94
Merged-chr3-51859390-3	chr3	51859276	51859476	+	778.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	198197.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	11.31	7.55	9.7	16.89	14.32	6.59	12.29	23.86	7.28	6.53	15.07	8.77
Merged-chr11-103362361-4	chr11	103362326	103362526	+	778.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	1266.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	8.08	7.8	5.7	5.63	9.82	7.53	1.33	7.46	5.9	8.54	8.04	8.77
Merged-chr2-102823644-2	chr2	102823523	102823723	+	778.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 12 of 13)	intron (NM_001039150, intron 12 of 13)	-76863.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	2.42	2.52	1.71	0.8	6.14	6.9	5.65	0.59	13.57	11.55	9.55	2.82
Merged-chr16-91731266-3	chr16	91731163	91731363	+	778.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1892.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	10.5	8.3	13.69	10.86	19.23	8.15	18.6	26.5	13.77	3.51	17.08	18.48
Merged-chr12-17271489-3	chr12	17271373	17271573	+	778.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027959, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	4878.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	10.5	12.58	12.55	6.84	15.55	17.87	9.97	18.0	11.21	21.09	10.55	9.08
Merged-chr11-94506147-2	chr11	94506048	94506248	+	778.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170671, intron 13 of 18)	intron (NM_170671, intron 13 of 18)	-6174.0	NM_027984	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	7.67	2.26	10.27	2.41	10.64	6.59	5.31	9.62	8.26	10.04	8.54	9.71
Merged-chr16-14164143-2	chr16	14164032	14164232	+	778.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114085, intron 1 of 8)	intron (NM_001114085, intron 1 of 8)	857.0	NM_001114085	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	9.69	6.29	12.55	4.83	3.68	7.53	3.32	9.03	9.05	4.52	9.04	3.13
Merged-chr13-36324873-2	chr13	36324780	36324980	+	778.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	207237.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.25	7.29	6.85	4.02	6.95	7.53	12.62	9.08	17.7	8.03	12.06	10.34
Merged-chr12-25190530-2	chr12	25190440	25190640	+	778.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61366.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.23	4.53	0.57	4.02	2.86	7.21	11.29	14.24	4.92	4.52	15.07	9.08
Merged-chr3-129643349-2	chr3	129643235	129643435	+	778.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81751.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	2.83	5.53	9.13	4.42	12.68	12.23	8.97	12.0	4.52	8.03	12.06	2.51
Merged-chr6-89282780-2	chr6	89282679	89282879	+	778.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	2946.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.25	3.52	3.42	1.21	9.41	13.48	7.64	9.76	9.64	5.02	12.06	10.02
Merged-chrX-159752084-3	chrX	159752002	159752202	+	778.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	43501.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	8.08	5.03	12.55	15.69	13.09	14.42	5.31	15.31	12.59	3.01	23.62	7.52
Merged-chr4-53108423-3	chr4	53108335	53108535	+	778.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51460.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	9.29	4.02	11.41	17.7	11.45	17.87	27.24	28.51	11.21	15.06	17.08	10.96
Merged-chr16-24517838-3	chr16	24517747	24517947	+	778.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-11467.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	6.46	7.29	6.85	7.64	9.82	17.56	8.64	18.7	12.59	7.53	14.57	9.71
Merged-chr1-95668579-3	chr1	95668441	95668641	+	778.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-947.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	12.52	10.82	10.84	16.09	6.14	8.15	10.96	10.71	8.26	4.02	4.52	8.46
Merged-chr14-100286101-3	chr14	100286004	100286204	+	778.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136308.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	6.46	9.06	2.85	5.23	5.73	9.09	7.97	8.8	4.52	5.52	3.01	8.77
Merged-chr18-23436523-2	chr18	23436425	23436625	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	21116.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	6.46	1.26	0.0	1.61	20.46	20.7	26.91	39.81	7.67	12.05	20.1	9.08
Merged-chr11-83605720-2	chr11	83605625	83605825	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-12638.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	1.62	2.01	4.56	6.84	18.41	10.98	10.3	11.02	9.24	5.52	12.56	12.53
Merged-chr10-60287439-2	chr10	60287318	60287518	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2957.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	2.42	6.04	3.99	13.27	10.23	3.14	5.65	8.44	7.87	4.02	3.52	6.27
Merged-chr6-88008919-2	chr6	88008804	88009004	+	778.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10891.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	12.11	5.79	11.41	24.13	17.59	5.02	6.64	13.18	8.65	5.02	7.54	2.51
Merged-chr12-76534908-2	chr12	76534786	76534986	+	778.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	1326.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	13.73	9.06	3.99	8.04	4.09	7.21	8.3	3.08	8.85	7.03	6.53	5.33
Merged-chr2-84938782-2	chr2	84938691	84938891	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021398, intron 3 of 12)	intron (NM_021398, intron 3 of 12)	2145.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	6.86	4.28	11.41	4.42	10.64	5.96	3.99	3.22	24.0	16.07	6.03	4.7
Merged-chr17-86283938-2	chr17	86283860	86284060	+	778.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	3218.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	16.96	3.77	10.27	4.83	6.55	15.68	5.31	6.53	5.9	8.03	5.53	1.25
Merged-chr5-64322533-1	chr5	64322433	64322633	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 13 of 18)	Lx7|LINE|L1	92176.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.44	3.27	7.99	11.26	9.82	9.41	7.64	19.04	1.18	2.01	3.52	3.45
Merged-chr2-118012428-3	chr2	118012325	118012525	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	Lx9|LINE|L1	98777.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	9.69	6.04	10.27	6.84	10.23	10.35	15.61	16.54	15.54	25.11	38.69	10.02
Merged-chr4-32179918-3	chr4	32179810	32180010	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215803.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	11.31	9.06	13.69	11.26	27.41	14.11	33.88	18.84	8.65	6.03	11.05	10.96
Merged-chr4-62626606-3	chr4	62626482	62626682	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	6910.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	10.5	7.04	8.56	11.66	11.05	8.47	7.97	7.35	8.85	8.03	14.57	7.21
Merged-chr3-105928374-3	chr3	105928272	105928472	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033780, intron 2 of 5)	intron (NM_001033780, intron 2 of 5)	4292.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	10.9	18.86	7.42	12.07	2.86	4.7	6.98	8.3	9.64	9.04	11.05	6.27
Merged-chr11-86717683-2	chr11	86717586	86717786	+	778.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003908, intron 14 of 31)	intron (NM_001003908, intron 14 of 31)	33605.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	12.92	7.55	17.68	9.25	14.73	6.27	8.3	10.57	2.95	6.53	7.54	6.58
Merged-chr7-96409226-2	chr7	96409132	96409332	+	778.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-67268.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	7.27	9.31	12.55	14.88	16.77	8.15	11.63	16.63	2.75	3.51	11.05	5.01
Merged-chr16-50000999-1	chr16	50000899	50001099	+	778.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20539.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	4.44	1.51	9.13	12.87	10.64	7.21	7.31	11.92	7.28	1.51	15.07	5.64
Merged-chr11-79121702-3	chr11	79121593	79121793	+	778.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	24780.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	7.27	11.82	7.99	5.23	14.32	16.93	8.64	11.61	18.49	9.04	13.06	7.52
Merged-chr18-25538360-3	chr18	25538245	25538445	+	778.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	141403.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	11.31	11.57	4.56	15.69	9.41	12.23	21.92	13.07	10.62	9.54	11.56	11.28
Merged-chr14-120452420-2	chr14	120452327	120452527	+	778.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26034.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.04	5.53	6.28	4.83	13.91	15.99	10.63	9.14	11.01	8.03	11.56	6.27
Merged-chr7-45080042-3	chr7	45079932	45080132	+	778.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12181.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.86	11.82	10.27	12.87	9.41	12.86	5.65	7.77	14.75	9.54	14.07	17.86
Merged-chr8-14992935-3	chr8	14992842	14993042	+	778.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-18083.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	4.44	12.32	8.56	16.09	7.36	9.41	9.3	14.41	7.08	3.01	13.06	13.16
Merged-chr9-66883831-3	chr9	66883690	66883890	+	778.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	35915.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	14.94	5.03	5.7	6.84	6.95	7.21	12.95	10.82	10.03	10.54	9.55	5.33
Merged-chr3-28050166-3	chr3	28050063	28050263	+	778.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 11 of 25)	intron (NM_008875, intron 11 of 25)	65992.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	12.92	13.58	26.24	9.65	13.09	6.9	5.98	13.07	18.88	10.04	13.57	10.02
Merged-chr19-37778099-2	chr19	37777989	37778189	+	778.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80281.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	12.52	4.28	10.27	12.47	5.73	5.64	12.95	12.62	1.77	2.51	4.52	3.13
Merged-chr4-145239880-3	chr4	145239774	145239974	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6996.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.86	9.81	6.85	11.26	10.23	5.64	8.3	14.24	9.44	4.52	7.03	9.08
Merged-chr5-96860150-1	chr5	96860050	96860250	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-61122.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	2.83	3.52	5.13	4.83	9.82	4.39	5.65	8.58	1.97	4.02	5.53	1.88
Merged-chr10-25289665-1	chr10	25289565	25289765	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_018747, exon 2 of 8)	5' UTR (NM_018747, exon 2 of 8)	9498.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	7.27	2.52	3.42	1.61	12.68	5.64	4.98	10.26	6.69	2.51	8.04	3.13
Merged-chr18-62252482-3	chr18	62252389	62252589	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-71715.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	19.79	12.07	12.55	19.31	5.32	7.84	1.66	10.37	21.64	16.07	9.55	8.77
Merged-chr11-85792560-2	chr11	85792452	85792652	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_077059, exon 5 of 5)	non-coding (NR_077059, exon 5 of 5)	-16872.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	8.08	4.02	10.84	10.05	11.45	5.02	16.61	23.1	1.97	2.51	10.05	3.45
Merged-chr18-4922074-1	chr18	4921974	4922174	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	109588.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	19.79	3.02	5.7	6.03	9.0	7.84	7.31	8.92	6.69	7.53	3.01	5.64
Merged-chr14-51913484-1	chr14	51913384	51913584	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145959)	promoter-TSS (NM_001145959)	4.0	NM_001145959	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	7.27	3.52	2.85	4.02	12.27	4.7	7.97	8.33	7.28	8.03	11.05	5.64
Merged-chr1-131689946-2	chr1	131689829	131690029	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1234.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	6.06	5.03	2.85	2.82	4.09	4.7	5.65	8.21	5.31	7.03	10.05	8.77
Merged-chr1-154274914-1	chr1	154274814	154275014	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	-18008.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.0	0.5	3.99	11.26	3.27	5.96	5.98	9.03	6.69	8.03	5.02	7.21
Merged-chr9-66876757-2	chr9	66876648	66876848	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42042.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	14.94	9.81	7.99	7.24	11.45	12.23	6.98	8.8	8.06	7.53	3.01	3.45
Merged-chr11-68063429-2	chr11	68063328	68063528	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	96970.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	7.27	11.07	4.56	14.08	3.68	5.33	4.32	11.3	5.9	1.0	6.53	3.45
Merged-chr1-80715743-1	chr1	80715643	80715843	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42810.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.42	3.77	11.41	2.41	3.68	6.9	7.97	9.25	8.65	9.04	5.53	3.45
Merged-chr14-69249355-1	chr14	69249255	69249455	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026331, intron 2 of 3)	intron (NM_026331, intron 2 of 3)	35748.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	1.62	2.26	1.14	1.61	5.73	3.76	6.98	8.13	3.15	2.51	4.52	3.76
Merged-chr5-62815961-2	chr5	62815868	62816068	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 1 of 8)	intron (NM_001170705, intron 1 of 8)	2145.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.21	4.02	3.99	4.83	13.09	13.48	5.65	13.79	9.83	11.55	9.55	3.76
Merged-chr3-88835134-2	chr3	88835050	88835250	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242372)	promoter-TSS (NM_001242372)	-81.0	NM_027389	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	8.88	11.82	9.13	16.49	0.0	0.0	0.0	0.0	8.06	15.57	5.53	12.22
Merged-chr9-30448610-2	chr9	30448522	30448722	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028874, intron 8 of 10)	intron (NM_028874, intron 8 of 10)	21293.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	1.21	7.29	1.14	4.02	2.45	5.96	4.32	11.72	10.82	4.52	6.53	10.02
Merged-chr17-35867711-3	chr17	35867609	35867809	+	778.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1094.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	14.13	11.57	5.13	6.03	10.23	14.74	5.31	6.14	12.39	21.09	18.09	6.58
Merged-chr10-24625241-3	chr10	24625147	24625347	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29805.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	12.11	10.06	10.84	13.27	12.27	10.35	12.62	12.11	12.98	18.08	11.56	6.89
Merged-chr17-27165594-3	chr17	27165515	27165715	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	2149.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	3.63	9.31	7.99	4.02	9.82	8.15	4.65	8.38	12.39	6.53	15.07	4.7
Merged-chr7-120833311-3	chr7	120833217	120833417	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9514.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.06	7.04	9.7	6.84	15.55	10.66	3.32	10.18	14.16	8.54	13.06	8.77
Merged-chr17-73107400-3	chr17	73107295	73107495	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-590.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	8.88	12.07	14.83	10.86	17.18	12.23	5.31	9.31	8.06	7.53	20.6	7.52
Merged-chr5-66114312-3	chr5	66114197	66114397	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16118.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	8.08	9.06	14.26	8.85	8.18	12.54	8.97	14.02	21.64	13.05	13.57	14.1
Merged-chr3-146100163-2	chr3	146100073	146100273	+	778.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172864, intron 3 of 22)	MTEb|LTR|ERVL-MaLR	7863.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	16.56	8.55	12.55	15.69	11.86	8.78	10.63	16.57	0.79	0.0	2.01	1.57
Merged-chr11-34071471-2	chr11	34071356	34071556	+	778.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	24528.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.86	5.03	3.42	4.42	17.18	11.29	3.99	12.11	10.42	10.04	3.52	7.21
Merged-chr17-43581231-3	chr17	43581151	43581351	+	778.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10258.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	14.13	6.79	3.42	10.86	7.77	13.48	16.28	18.39	12.19	6.53	10.05	10.02
Merged-chr5-123132629-4	chr5	123132575	123132775	+	778.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-46.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	7.67	3.27	11.98	7.64	8.18	7.21	4.32	7.35	9.05	7.53	13.06	3.45
Merged-chr2-30135079-3	chr2	30134977	30135177	+	778.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1331.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	16.15	8.8	5.7	7.64	9.41	20.07	9.63	5.3	14.95	8.54	8.54	16.29
Merged-chr12-102704390-3	chr12	102704187	102704387	+	778.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	582.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	3.23	2.01	7.99	1.61	2.45	2.82	5.65	2.38	6.29	3.01	5.02	5.64
Merged-chr17-26640448-2	chr17	26640360	26640560	+	778.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35936.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	2.42	3.52	2.28	2.41	16.36	7.84	17.61	12.11	3.74	10.04	12.56	7.52
Merged-chr15-53107747-2	chr15	53107656	53107856	+	778.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	238427.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.02	4.53	5.7	7.24	6.95	6.59	7.97	9.87	10.82	6.03	20.6	11.9
Merged-chr18-36792386-2	chr18	36792290	36792490	+	778.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001305627, exon 12 of 12)	3' UTR (NM_001305627, exon 12 of 12)	-1533.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	10.5	4.02	5.7	6.44	11.86	10.03	4.98	12.03	5.11	4.02	4.52	5.33
Merged-chr12-87415014-2	chr12	87414948	87415148	+	778.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	22709.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	6.46	3.52	2.28	5.63	6.55	4.08	7.64	4.6	11.8	8.03	5.02	6.89
Merged-chr5-115489013-3	chr5	115488951	115489151	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4567.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.46	9.56	7.42	6.44	3.68	10.35	8.97	6.39	13.18	20.08	12.06	11.28
Merged-chr9-21155007-3	chr9	21154901	21155101	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5095.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	8.88	7.55	11.41	6.44	6.95	7.21	4.65	9.64	15.34	11.55	2.01	6.27
Merged-chr5-105749285-1	chr5	105749185	105749385	+	778.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	(A)n|Simple_repeat|Simple_repeat	48475.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.03	14.75	9.54	17.59	5.01
Merged-chr8-124278076-1	chr8	124277976	124278176	+	778.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	46682.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.44	1.26	1.14	4.83	6.55	2.51	5.98	7.85	1.57	1.51	0.0	0.63
Merged-chr13-23581015-1	chr13	23580915	23581115	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-587.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	21.4	8.8	10.84	8.04	5.73	11.29	4.65	3.95	7.87	8.54	10.05	5.01
Merged-chr7-113172624-1	chr7	113172524	113172724	+	778.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30609.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	0.4	2.26	5.7	4.83	6.55	8.78	7.31	12.53	4.13	4.52	7.54	4.7
Merged-chr19-6090550-1	chr19	6090450	6090650	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026410, intron 5 of 5)	intron (NM_026410, intron 5 of 5)	-3869.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	8.08	12.83	18.83	9.65	4.91	3.14	1.99	2.38	9.83	5.52	8.54	4.7
Merged-chr3-144204668-1	chr3	144204568	144204768	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010723, intron 1 of 4)	CpG	587.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	10.5	17.1	10.27	18.1	10.64	15.05	9.63	15.79	11.21	20.59	14.57	7.83
Merged-chr1-79760245-3	chr1	79760128	79760328	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	1541.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	9.29	7.04	10.27	17.29	9.41	17.25	5.98	18.22	16.33	7.03	21.61	5.95
Merged-chr2-32534518-3	chr2	32534442	32534642	+	778.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-817.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	12.92	8.55	10.27	9.65	19.23	17.25	3.99	9.42	16.92	15.06	14.07	11.28
Merged-chr4-151995051-3	chr4	151994905	151995105	+	778.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172705, intron 1 of 3)	CpG	1174.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	11.71	4.28	11.98	9.65	4.09	4.7	11.63	5.69	13.18	11.55	11.56	11.59
Merged-chr17-87613554-2	chr17	87613449	87613649	+	778.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22430.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	7.67	5.28	5.7	7.24	8.18	9.09	17.94	8.24	4.52	10.04	17.08	5.33
Merged-chr13-9027467-3	chr13	9027371	9027571	+	778.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31459.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	18.98	3.52	11.41	16.09	13.09	19.13	9.63	18.08	12.0	7.53	11.05	7.83
Merged-chr1-171118446-3	chr1	171118347	171118547	+	778.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3214.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	6.06	15.85	9.7	8.85	15.14	19.13	5.98	8.69	11.8	10.54	14.57	10.02
Merged-chr11-96400033-2	chr11	96399902	96400102	+	778.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34244.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	2.02	0.5	0.0	0.4	4.91	15.05	17.94	7.93	2.95	7.53	8.54	4.39
Merged-chr2-21141872-2	chr2	21141801	21142001	+	778.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	63464.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	2.83	6.79	1.14	4.83	5.32	7.53	5.98	8.89	8.65	10.54	13.57	9.08
Merged-chr14-102615802-2	chr14	102615702	102615902	+	778.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	366830.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	1.21	5.79	2.28	7.64	7.36	6.59	3.99	12.42	10.23	12.05	8.04	7.21
Merged-chr12-70753117-2	chr12	70752982	70753182	+	778.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72432.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	8.48	5.79	3.99	10.86	4.91	2.51	6.64	7.93	2.16	1.51	1.0	2.82
Merged-chr13-12251945-2	chr13	12251830	12252030	+	778.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 2 of 32)	intron (NM_001081128, intron 2 of 32)	6183.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	4.44	3.77	7.42	2.82	8.18	1.25	6.31	12.36	6.69	6.03	4.02	7.52
Merged-chr6-128753992-2	chr6	128753890	128754090	+	778.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30944.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	6.06	5.28	1.14	5.63	7.77	7.21	7.64	6.7	10.03	16.07	16.08	6.58
Merged-chr3-58978278-3	chr3	58978185	58978385	+	778.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28693.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	3.63	2.26	2.28	4.02	3.68	8.15	2.66	3.73	1.97	3.01	2.51	2.19
Merged-chr4-136355179-3	chr4	136355079	136355279	+	778.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43581.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	8.88	6.79	7.42	8.04	9.82	14.74	3.32	8.58	12.59	19.58	13.06	5.33
Merged-chr4-150257395-3	chr4	150257302	150257502	+	778.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20078.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	8.48	5.03	2.85	12.07	5.73	9.09	2.99	13.07	19.67	14.56	15.58	10.65
Merged-chr12-73889768-2	chr12	73889678	73889878	+	778.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11546.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	2.02	2.52	3.99	8.04	9.41	12.23	15.61	30.98	13.77	9.04	16.58	7.52
Merged-chr16-92441101-1	chr16	92441001	92441201	+	778.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25068.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.83	0.25	2.85	2.82	11.86	10.35	6.31	11.1	0.98	5.52	0.0	5.95
Merged-chr3-129969522-3	chr3	129969439	129969639	+	778.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	667.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	7.67	6.79	5.7	10.05	7.36	14.11	5.65	17.27	10.62	10.54	11.56	12.22
Merged-chr2-43739629-3	chr2	43739555	43739755	+	778.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9169.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	8.08	8.8	4.56	13.67	12.27	9.72	15.61	14.13	15.34	9.54	24.12	7.52
Merged-chr7-95791075-3	chr7	95790969	95791169	+	778.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-380175.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	4.04	10.82	3.99	7.64	11.45	20.07	25.91	19.57	9.64	7.03	14.57	0.94
Merged-chr4-148675242-2	chr4	148675122	148675322	+	778.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31905.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.85	4.02	5.13	7.24	8.18	5.02	3.32	7.68	12.19	8.54	20.1	15.04
Merged-chr16-89872502-3	chr16	89872380	89872580	+	778.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54128.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	9.29	8.3	7.99	4.02	6.55	5.33	12.95	10.04	12.0	15.06	15.07	8.46
Merged-chr11-78712787-3	chr11	78712681	78712881	+	778.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-15356.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	4.44	5.53	5.13	7.64	4.5	15.99	5.31	11.3	16.52	13.05	25.12	15.35
Merged-chr11-115177978-2	chr11	115177862	115178062	+	778.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 3 of 5)	intron (NM_012030, intron 3 of 5)	9354.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	4.04	3.52	8.56	4.42	15.55	8.47	2.66	11.05	11.8	10.04	8.54	10.02
Merged-chr4-88032814-4	chr4	88032712	88032912	+	778.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 1 of 10)	CpG	595.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	6.86	9.56	9.13	7.24	6.95	18.19	11.29	18.03	10.42	14.06	12.06	9.4
Merged-chr10-8513471-3	chr10	8513408	8513608	+	778.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	Lx5c|LINE|L1	5317.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	8.48	8.05	10.27	8.04	9.82	9.41	8.97	5.55	11.21	8.54	9.55	5.95
Merged-chr14-55194012-3	chr14	55193891	55194091	+	778.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28016.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	6.86	7.29	7.99	10.86	9.82	5.64	9.3	10.07	14.55	12.05	9.55	16.6
Merged-chr15-99031968-6	chr15	99031871	99032071	+	778.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2080.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	4.44	5.03	6.85	6.44	12.68	9.72	4.32	1.99	12.0	17.07	7.03	5.33
Merged-chr5-96923630-3	chr5	96923458	96923658	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	2286.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	10.5	5.79	0.0	0.8	4.5	6.9	1.99	7.32	9.83	10.04	13.06	5.95
Merged-chr17-74328317-1	chr17	74328217	74328417	+	778.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4373.0	NM_024428	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	10.5	9.06	3.42	3.62	9.0	9.41	3.65	4.21	18.29	11.05	18.09	9.08
Merged-chr14-121956573-1	chr14	121956473	121956673	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	8620.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.42	1.51	1.14	6.03	2.86	7.53	1.33	4.77	2.56	2.51	1.51	1.57
Merged-chr18-49705639-2	chr18	49705542	49705742	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170960, intron 2 of 3)	Lx9|LINE|L1	49959.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	3.23	2.52	3.42	3.62	10.64	4.7	3.65	12.59	12.59	7.53	10.05	7.52
Merged-chr7-110248815-1	chr7	110248715	110248915	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009302, intron 2 of 11)	intron (NM_009302, intron 2 of 11)	27112.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.04	6.79	5.13	3.22	4.91	2.51	6.64	7.85	5.7	3.01	6.53	1.88
Merged-chr10-25291714-1	chr10	25291614	25291814	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	7449.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.62	3.27	5.13	4.02	3.27	1.88	4.32	7.15	1.18	2.01	0.5	0.0
Merged-chr17-43568154-1	chr17	43568054	43568254	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	-297.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	15.75	3.52	14.83	9.65	13.5	7.84	8.97	11.94	8.06	11.55	13.57	8.77
Merged-chr4-129877711-1	chr4	129877611	129877811	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-28515.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	2.02	5.03	13.12	8.04	10.23	0.94	10.3	5.55	8.06	10.04	12.56	3.76
Merged-chr12-59032258-2	chr12	59032162	59032362	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	18871.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	5.65	9.56	2.28	9.65	13.91	22.89	6.31	11.33	3.74	8.03	17.59	4.7
Merged-chr18-26905801-1	chr18	26905701	26905901	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1151644.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.62	5.53	6.85	6.03	9.0	3.14	2.33	7.74	2.56	3.01	9.04	2.51
Merged-chr16-32159159-3	chr16	32159067	32159267	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	6427.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	6.86	11.07	9.7	16.09	13.09	14.11	7.31	7.43	12.98	13.05	14.07	9.4
Merged-chr12-79525756-2	chr12	79525667	79525867	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	228416.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	12.92	4.02	2.28	7.24	3.68	2.82	9.63	7.37	11.21	6.53	5.53	9.08
Merged-chr11-46833490-2	chr11	46833385	46833585	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	22686.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.48	4.78	9.13	10.05	4.5	3.76	7.97	11.21	6.1	4.02	7.03	3.13
Merged-chr17-72962192-1	chr17	72962092	72962292	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43887.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.65	3.27	7.99	4.02	9.82	6.9	9.97	11.69	4.33	6.03	6.03	9.71
Merged-chr4-4596104-2	chr4	4595991	4596191	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66633.0	NM_001277919	622019.0	Mm.246123	NM_001277919		Gm11780	-	predicted gene 11780	protein-coding	0.0	0.0	0.0	0.8	20.05	5.64	3.65	16.26	10.82	1.51	14.57	6.89
Merged-chr6-135295729-2	chr6	135295614	135295814	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14670.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	9.69	13.83	6.28	2.41	34.36	37.0	30.56	46.32	5.7	2.51	4.52	3.13
Merged-chr7-80067410-1	chr7	80067310	80067510	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	7847.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.65	4.28	3.99	2.41	5.32	2.2	7.31	9.42	2.16	4.02	1.0	4.07
Merged-chr15-25227745-1	chr15	25227645	25227845	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186019.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.85	3.27	7.99	6.84	5.32	2.2	9.3	9.98	6.69	3.51	4.02	7.83
Merged-chr5-140636848-2	chr5	140636725	140636925	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	12206.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	10.9	3.02	6.28	9.65	12.68	10.98	1.99	6.56	6.69	12.55	16.08	8.46
Merged-chr13-120150777-1	chr13	120150677	120150877	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039648, intron 1 of 2)	intron (NM_001039648, intron 1 of 2)	10531.0	NM_001039648	639910.0	Mm.424428	NM_001039648	ENSMUSG00000096323	Gm20767	-	predicted gene, 20767	protein-coding	4.85	9.81	12.55	8.85	6.14	5.33	3.32	0.98	4.33	6.53	6.03	0.31
Merged-chr7-16204994-1	chr7	16204894	16205094	+	778.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027883, intron 9 of 16)	intron (NM_027883, intron 9 of 16)	16999.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	2.02	2.77	0.0	0.0	1.64	3.14	2.66	1.51	12.19	10.04	2.51	2.19
Merged-chr15-57695002-1	chr15	57694902	57695102	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_199449, exon 1 of 4)	5' UTR (NM_199449, exon 1 of 4)	335.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	10.09	7.04	4.56	6.44	8.59	11.92	5.31	7.63	6.88	8.54	9.04	8.77
Merged-chr4-97936547-2	chr4	97936463	97936663	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	158937.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	8.88	3.52	7.42	14.88	9.82	3.45	10.3	19.32	12.98	3.01	15.07	8.46
Merged-chr10-80967509-2	chr10	80967417	80967617	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33848.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	2.83	17.86	12.55	1.21	1.64	6.27	7.31	4.57	23.21	7.03	9.55	4.39
Merged-chr8-75105938-1	chr8	75105838	75106038	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-3571.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	12.11	14.84	0.0	4.02	7.77	9.41	0.0	0.59	2.16	8.03	0.0	2.19
Merged-chr9-94703622-2	chr9	94703544	94703744	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	33752.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	2.83	3.77	2.28	5.63	3.68	4.39	8.97	9.76	9.24	4.02	9.55	5.64
Merged-chr11-97986492-3	chr11	97986390	97986590	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-44.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	16.56	10.06	3.99	1.61	9.82	9.72	6.31	5.58	11.01	9.54	11.56	10.96
Merged-chr5-25526276-1	chr5	25526176	25526376	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3742.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	2.42	6.04	13.69	4.83	7.77	5.02	2.99	6.76	3.54	5.52	6.03	1.57
Merged-chr5-125379227-1	chr5	125379127	125379327	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	10790.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	9.69	8.8	3.99	2.41	1.64	3.76	2.66	1.82	2.36	5.02	0.5	2.51
Merged-chr11-85689485-1	chr11	85689385	85689585	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	30259.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	1.62	4.78	3.42	1.61	2.45	3.45	5.98	7.93	2.75	5.02	3.52	4.7
Merged-chr5-96804515-2	chr5	96804414	96804614	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 2 of 12)	MER21C|LTR|ERVL	11129.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	7.27	9.06	1.14	6.03	8.59	26.03	4.98	4.6	18.29	18.08	10.05	5.33
Merged-chr18-60209297-3	chr18	60209202	60209402	+	777.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-2775.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	13.33	9.56	19.97	13.27	10.23	7.53	11.63	5.3	16.13	11.05	12.56	15.35
Merged-chr10-44342123-3	chr10	44342031	44342231	+	777.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-17545.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.4	7.8	12.55	8.04	11.86	5.33	14.28	13.07	13.96	5.02	13.57	5.64
Merged-chr7-143624791-3	chr7	143624692	143624892	+	777.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	3053.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	9.29	10.31	9.13	9.65	5.73	16.62	5.65	9.9	25.37	13.56	13.57	11.28
Merged-chr3-62492767-3	chr3	62492674	62492874	+	777.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028136, intron 8 of 24)	intron (NM_028136, intron 8 of 24)	14214.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.85	5.03	15.97	14.08	5.32	2.51	6.64	14.05	9.64	12.55	12.56	7.83
Merged-chr5-43248026-2	chr5	43247918	43248118	+	777.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177379, intron 3 of 10)	L3|LINE|CR1	-12664.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	2.83	4.53	7.99	7.64	5.73	10.03	10.63	31.91	8.46	3.51	15.07	13.47
Merged-chr3-121329783-2	chr3	121329700	121329900	+	777.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38060.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	1.62	6.04	3.99	6.44	10.23	4.39	5.65	5.5	10.23	3.01	15.07	3.76
Merged-chr4-86428380-2	chr4	86428273	86428473	+	777.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029967)	TTS (NM_029967)	129930.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.4	2.26	2.28	3.62	3.27	2.51	7.64	5.41	3.74	10.54	4.52	3.76
Merged-chr6-37441146-3	chr6	37441041	37441241	+	777.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1007.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	11.31	7.8	5.7	7.64	9.82	8.78	3.65	18.03	17.31	11.55	10.55	8.77
Merged-chr10-62182669-1	chr10	62182569	62182769	+	777.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11558.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	5.25	3.77	5.7	4.02	8.59	6.59	10.3	10.57	6.29	6.03	6.53	3.13
Merged-chr13-95960803-3	chr13	95960716	95960916	+	777.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-68894.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.4	5.28	4.56	1.61	2.45	5.33	8.64	6.79	2.75	4.02	7.54	1.88
Merged-chr4-120405147-3	chr4	120405066	120405266	+	777.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159630)	promoter-TSS (NM_001159630)	-115.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	12.92	10.06	5.7	5.63	6.55	8.15	8.97	6.81	14.95	12.55	17.59	4.07
Merged-chr14-33393469-3	chr14	33393338	33393538	+	777.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310452, intron 4 of 10)	MTD|LTR|ERVL-MaLR	17586.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	10.9	7.8	4.56	10.86	5.32	9.72	9.63	8.3	5.31	3.01	21.1	8.46
Merged-chr15-100635375-2	chr15	100635278	100635478	+	777.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001285414, exon 1 of 3)	5' UTR (NM_001285414, exon 1 of 3)	181.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	9.29	7.29	1.71	0.8	3.27	5.33	5.98	8.1	5.11	2.51	12.06	1.88
Merged-chr17-13740965-2	chr17	13740855	13741055	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19586.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	7.27	5.79	8.56	3.22	11.05	10.03	9.3	11.61	10.62	12.55	13.06	6.58
Merged-chr10-99261150-2	chr10	99261058	99261258	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2073.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.08	11.32	3.99	9.65	13.09	9.72	4.98	6.84	8.26	6.03	3.52	6.27
Merged-chr13-37365657-1	chr13	37365557	37365757	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	RMER15|LTR|ERVL	20312.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.23	2.26	2.28	2.82	8.18	7.21	6.64	7.85	7.28	5.02	7.54	3.45
Merged-chr1-157248254-2	chr1	157248159	157248359	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-139579.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.04	5.03	4.56	4.02	13.91	12.54	15.94	24.0	12.59	1.0	11.05	7.52
Merged-chr17-87378499-2	chr17	87378398	87378598	+	777.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	49243.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	1.62	6.54	6.28	12.87	6.14	4.7	8.97	10.91	2.95	3.01	4.02	9.4
Merged-chr9-105122043-1	chr9	105121943	105122143	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9762.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	1.62	2.52	2.28	4.02	3.68	4.7	3.65	5.97	2.16	2.01	2.51	2.19
Merged-chr9-41069094-2	chr9	41068996	41069196	+	777.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	10410.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	10.9	5.03	3.99	4.83	7.77	14.11	11.96	10.79	1.57	3.51	7.03	5.64
Merged-chr9-95497121-2	chr9	95497029	95497229	+	777.733337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357977, intron 2 of 25)	Lx9|LINE|L1	14867.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	6.46	6.54	10.27	6.44	9.82	7.84	13.62	15.84	13.18	9.54	15.58	7.52
Merged-chr11-85844284-3	chr11	85844149	85844349	+	777.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	11634.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	12.52	12.83	10.27	6.44	10.64	7.84	11.96	10.77	9.64	5.52	10.05	5.33
Merged-chr13-30695376-3	chr13	30695267	30695467	+	777.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	35308.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	13.73	9.06	4.56	8.45	30.27	19.44	5.31	7.54	7.87	16.07	9.04	6.89
Merged-chr6-83584250-1	chr6	83584150	83584350	+	777.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_078345, intron 7 of 7)	intron (NR_078345, intron 7 of 7)	-11746.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	3.23	7.55	6.85	6.44	5.32	5.64	6.64	7.63	8.46	8.03	3.01	2.82
Merged-chr7-127129822-3	chr7	127129743	127129943	+	777.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7814.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	6.46	9.56	7.99	7.24	8.18	3.76	6.64	10.23	15.14	5.52	9.04	10.02
Merged-chr11-5491229-2	chr11	5491114	5491314	+	777.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29427.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	1.62	4.53	2.28	4.02	9.0	9.41	7.97	22.74	5.51	2.01	12.06	8.46
Merged-chr9-119343298-2	chr9	119343178	119343378	+	777.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357516, intron 3 of 10)	intron (NM_001357516, intron 3 of 10)	1984.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	10.5	4.28	7.42	0.0	22.5	23.2	14.28	7.32	3.93	6.53	5.53	2.82
Merged-chr8-45452859-2	chr8	45452771	45452971	+	777.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-42252.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	6.06	6.04	8.56	4.83	8.59	15.99	6.31	9.25	10.42	9.04	11.05	12.53
Merged-chr18-9508565-2	chr18	9508424	9508624	+	777.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58370.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.42	5.79	2.28	8.45	9.41	6.27	2.99	12.76	12.0	5.02	6.53	4.39
Merged-chr10-8342817-2	chr10	8342715	8342915	+	777.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	176010.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.04	7.29	11.98	12.07	6.14	7.21	4.65	7.07	4.33	7.53	7.03	4.39
Merged-chr14-20370983-3	chr14	20370886	20371086	+	777.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024512, intron 7 of 13)	PB1D10|SINE|Alu	17924.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	10.09	5.53	15.97	15.28	8.18	13.8	13.29	19.93	7.08	4.52	14.57	4.7
Merged-chr10-59310845-3	chr10	59310750	59310950	+	777.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12446.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	8.88	3.02	11.41	16.09	8.59	7.21	13.95	10.23	10.23	11.05	12.56	16.6
Merged-chr15-25859649-3	chr15	25859531	25859731	+	777.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	16333.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	8.88	8.8	3.42	10.86	9.41	10.66	11.96	12.79	12.59	7.53	15.07	5.33
Merged-chr9-78177076-3	chr9	78177004	78177204	+	777.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040401, intron 3 of 3)	intron (NR_040401, intron 3 of 3)	1190.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	21.8	16.85	6.85	7.24	16.77	26.03	16.28	6.31	8.06	6.03	5.53	5.64
Merged-chr10-118140371-2	chr10	118140281	118140481	+	777.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1406.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	17.36	6.29	11.98	11.66	18.82	8.47	6.64	12.25	0.79	1.51	4.52	0.94
Merged-chr14-61968667-2	chr14	61968572	61968772	+	777.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-286299.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	1.62	2.52	9.7	2.01	13.5	10.98	15.94	14.75	10.62	11.55	11.56	4.7
Merged-chr13-48862109-2	chr13	48862008	48862208	+	777.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	8777.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	6.46	14.09	10.27	6.84	16.36	15.37	3.65	9.79	7.28	3.51	9.04	8.14
Merged-chr8-47702517-3	chr8	47702423	47702623	+	777.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11408.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	7.27	11.57	5.7	8.85	6.14	15.37	12.29	19.77	8.46	20.59	14.07	4.07
Merged-chr5-136218140-3	chr5	136218033	136218233	+	777.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302938)	TTS (NM_001302938)	-19179.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	7.67	6.79	10.27	6.44	19.64	31.98	13.95	6.95	16.13	18.58	18.59	10.65
Merged-chr16-44764815-2	chr16	44764797	44764997	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	-839.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	2.02	2.77	5.13	6.44	2.45	1.88	0.0	2.8	1.77	3.01	0.5	1.25
Merged-chr19-56726189-3	chr19	56726096	56726296	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3824.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	12.52	7.29	10.27	7.64	27.41	9.72	7.31	18.2	14.95	16.57	16.58	8.14
Merged-chr17-23610698-2	chr17	23610599	23610799	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289484, exon 7 of 7)	exon (NM_001289484, exon 7 of 7)	9873.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	16.15	6.04	10.84	8.04	2.05	5.33	5.65	10.21	12.19	2.51	5.02	9.71
Merged-chr3-9403008-3	chr3	9402903	9403103	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015499)	promoter-TSS (NR_015499)	-75.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	8.48	6.04	6.28	10.05	13.5	15.37	8.64	27.42	14.75	15.06	14.57	12.22
Merged-chr5-67295843-1	chr5	67295743	67295943	+	777.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11112.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	4.44	2.77	2.28	2.41	4.09	0.0	0.33	3.0	22.62	13.56	33.67	10.65
Merged-chr9-13847820-2	chr9	13847729	13847929	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20113.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	3.23	7.04	8.56	14.88	16.77	20.07	36.21	30.64	5.7	3.51	24.12	6.27
Merged-chr7-43672445-2	chr7	43672364	43672564	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	433.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	4.85	5.79	9.13	4.83	5.32	8.47	6.64	5.83	12.0	7.53	14.57	5.95
Merged-chr18-69664731-1	chr18	69664631	69664831	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-260828.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	2.42	3.77	2.28	5.63	4.09	13.48	4.65	5.3	9.83	3.51	4.02	6.58
Merged-chr15-63932863-2	chr15	63932766	63932966	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 11 of 11)	intron (NM_001360037, intron 11 of 11)	18405.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	1.62	4.28	14.26	10.86	4.09	7.84	8.3	7.91	6.88	3.01	10.55	5.01
Merged-chr8-24519482-1	chr8	24519382	24519582	+	777.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34496.0	NR_035483									4.44	4.02	5.7	8.04	1.23	2.2	3.65	13.37	16.52	21.59	14.07	10.02
Merged-chr1-80637329-3	chr1	80637255	80637455	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27997.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	7.67	6.79	12.55	7.24	23.32	8.47	14.95	11.52	9.64	8.54	16.08	11.59
Merged-chr8-72361453-2	chr8	72361364	72361564	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007944, intron 21 of 23)	MTC|LTR|ERVL-MaLR	42402.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.23	2.26	7.99	6.03	0.82	7.53	3.65	9.45	13.18	3.01	10.05	9.08
Merged-chr5-92098496-3	chr5	92098346	92098546	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14702.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.86	7.55	6.85	5.63	11.05	8.78	6.98	12.98	6.49	9.04	12.56	10.02
Merged-chr2-178498148-2	chr2	178498054	178498254	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67639.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	10.5	5.03	13.69	8.04	2.45	1.25	7.31	9.28	2.16	2.01	4.52	2.82
Merged-chrX-56474185-3	chrX	56474102	56474302	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	(T)n|Simple_repeat|Simple_repeat	19363.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	12.52	7.29	10.27	14.88	14.32	11.29	12.29	14.38	12.0	9.04	12.06	4.7
Merged-chr9-21864653-1	chr9	21864553	21864753	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-12018.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.0	4.53	5.7	4.02	2.45	7.53	15.28	7.4	4.33	3.01	0.5	2.19
Merged-chr13-12475547-2	chr13	12475446	12475646	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-13808.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	1.62	5.03	6.28	7.24	8.59	11.29	8.97	14.41	10.82	14.56	17.59	10.65
Merged-chr10-21997056-2	chr10	21996908	21997108	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001161850, exon 8 of 12)	exon (NM_001161850, exon 8 of 12)	2342.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.04	3.27	1.14	0.8	9.82	10.66	2.99	2.38	2.36	2.51	0.0	9.08
Merged-chr3-9753865-1	chr3	9753765	9753965	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	79814.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.63	3.77	7.42	4.42	9.41	4.7	7.64	10.79	4.72	2.01	9.55	5.95
Merged-chr9-62933142-3	chr9	62933031	62933231	+	777.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	47748.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.23	9.31	14.83	13.67	22.09	7.53	13.29	26.94	9.05	11.05	10.05	4.7
Merged-chr19-21571331-3	chr19	21571155	21571355	+	777.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81536.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	4.04	3.02	1.71	6.44	5.73	6.9	14.62	2.1	2.75	5.02	5.02	3.45
Merged-chr11-105496849-3	chr11	105496728	105496928	+	777.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40093.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	9.69	7.29	14.26	11.66	6.95	11.92	5.65	12.28	12.0	14.06	7.54	10.34
Merged-chr5-122109974-3	chr5	122109869	122110069	+	777.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183307, intron 11 of 12)	intron (NM_183307, intron 11 of 12)	9018.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	14.54	11.82	10.84	12.47	22.09	17.25	24.58	16.6	12.39	9.54	21.61	11.59
Merged-chr15-50745541-3	chr15	50745433	50745633	+	777.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	143516.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	15.75	8.3	6.28	2.41	11.45	29.79	7.31	6.48	16.33	25.11	8.04	3.13
Merged-chr5-118468208-2	chr5	118468123	118468323	+	777.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92496.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	12.92	3.02	2.85	9.25	17.18	9.72	14.62	9.76	7.67	2.51	7.03	3.76
Merged-chr2-32647471-2	chr2	32647373	32647573	+	777.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	878.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	7.27	6.54	15.4	12.07	7.36	9.72	12.62	14.83	4.33	3.51	9.55	3.76
Merged-chr2-90655672-3	chr2	90655564	90655764	+	777.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21551.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	11.71	10.82	11.41	12.07	12.27	11.92	6.64	13.57	8.26	20.08	11.56	12.22
Merged-chr4-99947268-3	chr4	99947134	99947334	+	777.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	17783.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	6.06	6.54	3.42	10.05	5.32	0.63	6.31	6.59	5.51	6.53	11.05	7.21
Merged-chr17-43334322-3	chr17	43334223	43334423	+	777.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26108.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	7.27	4.02	13.12	12.47	2.05	5.96	5.98	7.85	28.32	26.11	39.7	15.98
Merged-chr10-59333646-2	chr10	59333535	59333735	+	777.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	RSINE1|SINE|B4	10339.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	8.48	4.53	5.13	6.44	14.73	6.27	4.98	9.06	11.01	8.54	13.57	8.46
Merged-chr14-55736486-3	chr14	55736403	55736603	+	777.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	9181.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	20.19	8.3	7.42	13.67	11.45	5.64	7.64	15.87	7.08	10.54	14.57	19.74
Merged-chr19-59026006-6	chr19	59026007	59026207	+	777.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	49962.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.85	3.52	5.13	8.85	10.64	6.9	8.97	4.54	5.51	11.05	12.56	6.27
Merged-chr9-85449693-2	chr9	85449577	85449777	+	777.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122527.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.44	6.04	9.7	16.09	12.68	4.7	12.29	15.81	2.95	16.07	13.06	11.9
Merged-chr1-160246096-2	chr1	160246002	160246202	+	777.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 4 of 8)	intron (NM_001038621, intron 4 of 8)	-33210.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	5.65	10.56	10.84	7.64	22.5	5.96	8.3	17.8	4.92	5.02	6.53	5.33
Merged-chr3-97868285-3	chr3	97868187	97868387	+	777.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	CpG	20420.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	7.67	10.31	13.69	16.49	8.59	12.23	7.31	16.91	11.01	6.03	12.56	6.27
Merged-chr16-8836844-1	chr16	8836744	8836944	+	777.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	6744.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	2.02	3.02	6.85	4.42	4.5	9.09	5.31	7.63	7.08	4.02	4.02	2.51
Merged-chr12-13491952-1	chr12	13491852	13492052	+	777.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	135694.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	8.48	6.79	6.28	11.26	6.95	7.21	8.97	10.26	8.06	5.02	11.56	5.01
Merged-chr11-96860759-2	chr11	96860663	96860863	+	777.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019877, intron 8 of 8)	intron (NM_019877, intron 8 of 8)	10370.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	6.86	4.78	6.85	6.84	13.5	16.62	6.64	10.09	13.77	9.04	12.56	8.14
Merged-chr2-30796641-3	chr2	30796521	30796721	+	777.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	5116.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	9.69	7.04	7.99	13.27	22.09	13.48	7.97	11.07	9.64	14.56	19.6	9.08
Merged-chr8-35469151-2	chr8	35469040	35469240	+	777.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026067, exon 7 of 7)	exon (NM_026067, exon 7 of 7)	26393.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	11.31	7.04	1.71	13.27	13.09	13.8	6.64	13.74	9.24	7.03	3.01	2.82
Merged-chr8-125559216-2	chr8	125559131	125559331	+	777.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10632.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	10.5	4.28	5.13	11.66	7.77	6.59	7.64	13.29	9.05	5.52	19.09	6.27
Merged-chr13-99238917-2	chr13	99238804	99239004	+	777.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	54081.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.81	5.03	4.56	12.07	10.64	8.15	14.28	10.35	13.18	4.02	11.56	6.89
Merged-chr8-34808216-6	chr8	34808057	34808257	+	777.236084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176933, exon 1 of 4)	exon (NM_176933, exon 1 of 4)	547.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.44	15.59	9.13	4.83	9.82	5.64	11.96	6.59	12.0	9.54	9.55	8.46
Merged-chrY-1285992-3	chrY	1285937	1286137	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012008, intron 1 of 16)	intron (NM_012008, intron 1 of 16)	576.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	7.67	9.56	11.98	15.28	9.0	11.92	11.63	5.13	6.1	12.55	11.56	9.4
Merged-chr1-140351838-3	chr1	140351721	140351921	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081027, intron 2 of 27)	Lx8|LINE|L1	105564.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	10.9	9.81	10.84	10.05	9.0	10.03	6.64	13.68	9.44	1.51	12.56	11.9
Merged-chr1-157019891-3	chr1	157019830	157020030	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-80304.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	9.69	7.04	5.7	13.27	22.91	13.48	18.6	19.01	8.26	4.02	10.05	6.89
Merged-chr11-87751752-3	chr11	87751658	87751858	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5106.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	10.5	5.79	11.41	6.84	16.77	16.31	4.98	12.22	10.82	9.04	10.55	4.7
Merged-chr1-152761958-3	chr1	152761860	152762060	+	777.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	4345.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.48	11.32	14.26	7.24	15.55	8.78	5.31	11.19	14.36	10.04	24.62	9.08
Merged-chr1-167343881-1	chr1	167343781	167343981	+	777.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6110.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	7.27	1.76	2.28	6.03	9.0	5.33	11.29	14.16	1.38	4.02	5.02	0.63
Merged-chr6-91509564-3	chr6	91509469	91509669	+	777.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	6319.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	10.5	5.79	5.13	8.85	8.18	12.86	14.28	7.85	15.93	9.54	21.1	8.46
Merged-chr16-30787741-3	chr16	30787586	30787786	+	777.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187963.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.46	2.26	0.0	4.83	3.27	3.14	8.64	4.35	7.28	8.03	6.53	7.83
Merged-chr12-110816993-2	chr12	110816889	110817089	+	777.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011973, intron 4 of 11)	B3A|SINE|B2	23950.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	4.44	4.78	10.84	8.85	11.86	12.86	10.96	14.27	11.6	7.03	11.56	9.08
Merged-chr7-58859123-3	chr7	58859014	58859214	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	200912.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	10.5	5.53	6.28	13.67	4.09	10.66	13.29	20.66	7.67	5.02	15.07	10.65
Merged-chr11-61231562-3	chr11	61231461	61231661	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138545, intron 9 of 10)	intron (NR_138545, intron 9 of 10)	22819.0	NM_001331112	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	14.54	20.88	15.97	8.04	4.09	12.23	5.31	8.66	11.01	6.53	5.02	16.6
Merged-chr1-165765288-3	chr1	165765227	165765427	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	B4|SINE|B4	1569.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.44	6.54	13.12	5.63	9.82	9.72	9.3	9.7	13.57	11.05	11.56	15.04
Merged-chr5-143044141-3	chr5	143044028	143044228	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	68892.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.25	6.54	4.56	12.47	26.59	5.96	5.31	7.82	14.16	14.06	11.56	13.16
Merged-chr4-43819030-2	chr4	43818948	43819148	+	777.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2385.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	10.5	4.28	13.69	12.87	5.73	4.08	4.98	13.15	4.52	4.52	6.03	3.13
Merged-chr17-27975493-2	chr17	27975378	27975578	+	777.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	66172.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.04	7.04	10.27	4.83	13.09	16.31	11.29	18.25	1.57	0.5	0.5	1.25
Merged-chr11-79161313-3	chr11	79161300	79161500	+	777.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-14927.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	7.27	4.02	1.14	8.45	9.0	9.41	8.97	3.0	2.36	8.54	11.56	4.7
Merged-chr17-26931958-2	chr17	26931860	26932060	+	777.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053173, intron 10 of 10)	intron (NM_053173, intron 10 of 10)	-1167.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	6.06	4.53	7.42	6.44	9.0	12.86	4.65	5.16	21.05	14.56	15.58	10.65
Merged-chr4-35164459-2	chr4	35164364	35164564	+	777.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6980.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	1.21	1.01	1.14	0.0	15.55	14.74	7.97	3.56	4.92	9.54	5.53	3.13
Merged-chr15-83563538-3	chr15	83563446	83563646	+	777.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009775)	promoter-TSS (NM_009775)	-27.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	8.88	8.3	11.98	7.64	8.59	10.66	8.3	7.57	14.55	9.54	19.09	11.59
Merged-chr16-12473737-2	chr16	12473647	12473847	+	777.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-337643.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	4.44	3.27	7.99	11.26	11.86	8.47	17.61	31.71	11.6	7.03	11.05	9.4
Merged-chr3-18051688-2	chr3	18051577	18051777	+	777.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2648.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	4.85	3.27	7.42	4.83	6.55	9.09	14.62	14.41	8.46	10.54	11.05	8.14
Merged-chrX-94289177-3	chrX	94289088	94289288	+	777.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	14614.0	NR_106133	102466238.0		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA	11.31	11.32	10.27	12.87	10.23	12.23	5.65	15.36	9.44	8.54	16.58	5.01
Merged-chr1-136581621-3	chr1	136581524	136581724	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43277.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	9.29	7.8	6.85	2.41	15.55	11.29	4.65	2.92	12.0	13.56	9.55	10.02
Merged-chr1-171610176-1	chr1	171610076	171610276	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2766.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	4.85	4.02	2.28	0.8	4.09	4.7	3.65	1.51	7.87	3.51	4.52	7.52
Merged-chr5-120088720-1	chr5	120088620	120088820	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27793.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	6.86	8.05	2.28	1.61	11.05	12.23	4.65	6.62	8.06	8.54	5.53	4.7
Merged-chr2-163643565-1	chr2	163643465	163643665	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012032, intron 1 of 9)	PB1D7|SINE|Alu	-1285.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	6.46	1.01	0.57	1.21	2.45	3.45	5.65	7.6	2.75	4.52	3.52	1.88
Merged-chr2-124669427-1	chr2	124669327	124669527	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15846.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.06	2.52	3.99	4.02	4.09	2.51	2.33	16.74	9.05	1.51	4.02	3.76
Merged-chr3-122090757-1	chr3	122090657	122090857	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 11 of 49)	intron (NM_007378, intron 11 of 49)	46297.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	2.83	2.26	3.42	3.62	3.27	7.21	6.64	7.91	3.93	6.53	8.54	6.89
Merged-chr12-3307667-1	chr12	3307567	3307767	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	2302.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	4.04	4.78	1.14	0.8	4.91	1.25	1.99	3.87	4.92	1.0	3.52	4.07
Merged-chr11-21013286-1	chr11	21013186	21013386	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78038.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	2.42	2.52	0.0	0.0	5.73	9.72	1.33	0.76	16.52	12.55	2.51	2.51
Merged-chr9-42123697-1	chr9	42123597	42123797	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011436, intron 1 of 47)	intron (NM_011436, intron 1 of 47)	600.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.25	3.52	0.0	0.0	2.05	1.25	0.33	1.26	12.19	7.53	13.06	5.01
Merged-chr7-81195667-2	chr7	81195569	81195769	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-18135.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.42	3.27	7.42	3.22	3.27	1.57	5.98	6.59	7.67	1.51	10.55	4.07
Merged-chr4-6428858-1	chr4	6428758	6428958	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010945, intron 9 of 30)	intron (NM_010945, intron 9 of 30)	25413.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	12.11	5.79	19.4	9.65	3.68	1.25	4.65	14.75	6.29	1.0	5.02	7.52
Merged-chr11-33274513-1	chr11	33274413	33274613	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110973, intron 23 of 28)	L2|LINE|L2	-70925.0	NM_019916	27140.0	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.81	0.5	2.85	3.22	4.91	6.59	6.64	10.85	0.39	1.51	2.51	0.63
Merged-chr7-83842815-1	chr7	83842715	83842915	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41526.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.4	3.27	5.7	0.4	2.05	6.59	8.97	9.48	5.31	3.51	8.54	4.07
Merged-chr9-107770481-1	chr9	107770381	107770581	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153190, exon 1 of 24)	non-coding (NR_153190, exon 1 of 24)	521.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	4.04	3.52	4.56	4.83	4.09	9.09	1.99	6.45	4.52	5.02	7.03	9.08
Merged-chr14-27172313-1	chr14	27172213	27172413	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	MTC|LTR|ERVL-MaLR	28320.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.62	1.51	10.27	6.44	8.18	3.14	9.63	6.7	5.51	3.51	5.53	3.13
Merged-chr15-13371527-1	chr15	13371427	13371627	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-197852.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.83	3.52	3.42	4.42	3.27	2.2	5.31	6.59	7.87	7.03	3.52	4.07
Merged-chr17-85519027-1	chr17	85518927	85519127	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99369.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.23	1.01	0.0	0.0	2.45	0.63	7.31	6.7	0.59	0.5	4.52	1.25
Merged-chr10-67640860-1	chr10	67640760	67640960	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-68901.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	4.04	1.76	5.7	0.8	4.91	4.39	1.99	2.86	5.9	4.52	16.08	10.96
Merged-chr8-4213574-2	chr8	4213458	4213658	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	3754.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	4.85	3.27	1.14	3.22	1.23	4.7	6.31	8.38	11.8	5.52	8.04	5.33
Merged-chr9-92250151-1	chr9	92250051	92250251	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011636)	promoter-TSS (NM_011636)	-43.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	11.31	7.29	15.4	16.09	17.59	7.84	8.97	25.82	15.54	10.54	13.06	7.21
Merged-chr2-153704409-1	chr2	153704309	153704509	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-36878.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.0	0.0	0.0	0.0	2.86	6.27	0.0	1.6	11.21	4.02	9.55	3.76
Merged-chr2-128703670-1	chr2	128703570	128703770	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	Lx8|LINE|L1	4755.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	2.42	2.01	1.71	3.22	4.91	1.25	5.98	5.55	6.49	3.51	6.03	1.25
Merged-chr13-107842559-1	chr13	107842459	107842659	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	47505.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.42	2.26	7.42	4.02	6.95	2.2	0.33	2.3	2.56	4.02	5.02	2.19
Merged-chr4-133759579-1	chr4	133759479	133759679	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5968.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.67	10.06	22.82	8.04	3.68	8.15	3.99	4.32	5.11	1.51	5.02	4.07
Merged-chr16-92698172-1	chr16	92698072	92698272	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-843.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.81	4.28	1.71	3.22	2.05	3.45	0.66	2.1	6.29	5.02	3.01	6.89
Merged-chr12-35534335-2	chr12	35534174	35534374	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.44	8.05	6.28	5.63	5.73	5.96	6.31	7.29	5.11	5.02	10.05	2.82
Merged-chr1-191167997-1	chr1	191167897	191168097	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3180.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	7.67	5.53	2.28	0.0	1.64	7.84	0.66	0.76	1.38	3.01	0.5	1.88
Merged-chr18-55204224-1	chr18	55204124	55204324	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-211633.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.62	3.27	3.42	5.23	3.27	11.6	5.65	6.95	1.18	0.0	0.0	0.0
Merged-chr14-75148433-1	chr14	75148333	75148533	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	12008.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	8.08	1.01	3.42	4.02	4.5	8.47	2.99	9.25	5.11	6.03	8.54	7.52
Merged-chr3-103738450-3	chr3	103738366	103738566	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	-465.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	7.27	6.79	9.7	8.04	6.55	13.8	9.3	9.14	21.44	20.08	15.07	10.34
Merged-chr2-104996483-1	chr2	104996383	104996583	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177600, intron 17 of 17)	intron (NM_177600, intron 17 of 17)	20544.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	7.27	2.52	2.28	2.82	3.68	5.02	3.99	5.89	15.14	3.51	4.52	12.22
Merged-chr13-55527918-1	chr13	55527818	55528018	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013739, intron 1 of 4)	intron (NM_013739, intron 1 of 4)	620.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	3.23	2.52	3.99	8.45	6.55	2.2	5.65	6.87	3.34	1.51	6.53	5.95
Merged-chr1-51944951-1	chr1	51944851	51945051	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.85	4.02	5.13	7.24	2.45	2.82	6.31	6.62	5.31	4.02	4.52	1.88
Merged-chr4-3975215-2	chr4	3975111	3975311	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35787.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	6.46	4.53	4.56	6.44	6.55	9.41	2.33	9.56	8.26	6.53	18.09	8.14
Merged-chr16-13644681-1	chr16	13644581	13644781	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358452, intron 11 of 22)	L1MC4|LINE|L1	23489.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	2.42	1.26	3.42	8.04	7.77	4.08	6.64	11.02	6.1	8.03	2.01	4.39
Merged-chr16-92399654-1	chr16	92399554	92399754	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	424.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.46	9.31	10.27	9.65	13.91	26.34	6.98	10.07	16.52	16.57	12.06	12.84
Merged-chr8-79392848-2	chr8	79392752	79392952	+	776.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	6616.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	8.08	14.84	9.13	8.85	6.14	13.8	14.28	15.06	10.82	16.57	9.55	13.16
Merged-chr17-50123948-2	chr17	50123804	50124004	+	776.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	Charlie1|DNA|hAT-Charlie	66593.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.46	7.8	8.56	1.21	7.77	12.54	0.66	9.22	6.1	4.02	3.52	1.25
Merged-chr9-64018981-4	chr9	64018831	64019031	+	776.945251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3128.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.25	8.8	0.0	13.67	2.86	5.64	11.63	6.11	6.29	6.53	7.03	5.01
Merged-chr10-62337366-3	chr10	62337276	62337476	+	776.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3045.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	7.67	5.53	5.7	12.07	16.77	8.15	13.29	8.94	10.23	9.54	10.55	16.29
Merged-chr9-41102336-3	chr9	41102243	41102443	+	776.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	B1F|SINE|Alu	-22837.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	9.29	8.55	3.99	12.47	9.82	9.72	11.63	22.07	17.9	12.05	19.09	3.76
Merged-chr14-118713524-3	chr14	118713446	118713646	+	776.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-7327.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.85	2.01	8.56	7.64	5.73	5.64	10.63	10.15	10.82	6.53	16.08	9.08
Merged-chr6-72374976-2	chr6	72374867	72375067	+	776.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5501.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	5.25	9.06	9.13	3.62	11.45	11.29	9.3	6.84	13.77	8.03	11.56	7.83
Merged-chr5-41563604-2	chr5	41563514	41563714	+	776.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144077.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.23	8.05	6.85	0.8	4.09	6.27	4.65	5.94	18.49	21.59	17.59	15.35
Merged-chr2-102755082-3	chr2	102754965	102755165	+	776.894409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-8305.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	17.77	15.34	6.28	9.25	15.96	28.54	8.97	5.64	24.59	26.61	12.56	8.14
Merged-chr10-24468850-3	chr10	24468760	24468960	+	776.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126582.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.44	14.09	9.7	9.65	8.59	13.17	8.97	12.79	18.29	20.08	20.1	10.34
Merged-chr15-6011837-3	chr15	6011738	6011938	+	776.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	32866.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	12.52	7.04	15.97	16.89	13.91	13.48	10.96	11.3	10.03	13.56	9.55	5.01
Merged-chr19-18617692-3	chr19	18617588	18617788	+	776.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	14125.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	14.54	7.29	2.28	10.46	13.5	18.81	26.24	8.89	13.18	11.55	11.56	10.02
Merged-chr3-135851776-2	chr3	135851679	135851879	+	776.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026228, intron 3 of 8)	Tigger20a|DNA|TcMar-Tigger	-11510.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	5.25	5.03	8.56	4.02	8.59	4.08	3.99	10.29	8.46	4.02	11.05	6.89
Merged-chr3-126623825-2	chr3	126623808	126624008	+	776.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	26957.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.02	3.52	4.56	3.62	4.91	3.45	2.66	0.45	1.38	5.02	2.01	5.64
Merged-chr15-38655401-2	chr15	38655309	38655509	+	776.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6495.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.63	7.04	11.98	5.63	11.45	14.42	6.31	10.23	8.06	6.53	2.01	10.02
Merged-chr4-59450371-2	chr4	59450268	59450468	+	776.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11735.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.85	4.02	11.98	4.83	9.0	13.48	3.32	9.7	8.46	8.03	5.53	7.21
Merged-chr4-95046065-2	chr4	95045962	95046162	+	776.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6160.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.67	8.8	4.56	15.69	10.64	21.64	1.66	4.01	8.85	7.53	4.02	1.57
Merged-chr7-127077119-3	chr7	127077030	127077230	+	776.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14306.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	10.09	8.55	11.98	12.07	10.23	14.74	8.3	26.44	19.87	14.56	23.11	18.8
Merged-chr12-25197937-3	chr12	25197827	25198027	+	776.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68753.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	6.46	14.09	9.13	13.27	7.77	17.56	13.95	13.51	9.05	1.51	10.05	6.27
Merged-chr3-96102243-3	chr3	96102159	96102359	+	776.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2268.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	11.71	7.8	9.13	10.86	10.23	8.15	9.3	11.02	10.42	4.02	15.07	8.14
Merged-chr5-103719968-3	chr5	103719858	103720058	+	776.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34204.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	8.88	7.29	10.27	5.63	11.05	14.11	3.65	5.33	28.32	26.11	24.12	8.77
Merged-chr12-40680701-3	chr12	40680603	40680803	+	776.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 12 of 52)	B3|SINE|B2	234650.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	8.08	10.56	9.13	7.64	9.41	11.92	1.33	10.07	12.19	13.05	14.57	9.08
Merged-chr11-116885417-3	chr11	116885331	116885531	+	776.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31431.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	6.46	10.31	10.27	4.42	10.23	10.66	6.64	4.79	14.36	9.04	4.02	12.22
Merged-chr17-42857716-2	chr17	42857644	42857844	+	776.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	18680.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.23	8.3	3.42	5.63	8.18	4.39	1.99	4.68	15.34	13.56	10.55	9.4
Merged-chr10-121630349-3	chr10	121630271	121630471	+	776.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4039.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	8.48	3.27	13.69	15.28	9.41	17.87	17.94	24.2	14.75	11.05	15.58	7.21
Merged-chr12-108638005-3	chr12	108637805	108638005	+	776.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2152.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	3.63	4.78	3.42	5.63	2.45	8.15	2.66	3.14	10.62	11.05	12.06	7.21
Merged-chr5-142401950-2	chr5	142401845	142402045	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199068, exon 1 of 9)	exon (NM_199068, exon 1 of 9)	448.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	5.65	3.27	3.99	8.85	6.14	10.98	8.64	6.08	3.54	6.03	13.06	10.65
Merged-chr6-72851755-1	chr6	72851655	72851855	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019715, intron 3 of 6)	intron (NM_019715, intron 3 of 6)	47537.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	5.25	4.02	8.56	8.85	9.0	13.8	5.31	5.55	2.36	5.52	8.04	5.64
Merged-chr11-33147922-1	chr11	33147822	33148022	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_102395)	promoter-TSS (NR_102395)	-522.0	NR_102395	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	4.85	2.52	5.13	2.82	4.91	12.54	6.98	7.96	4.13	7.53	5.53	4.07
Merged-chr10-94904805-3	chr10	94904699	94904899	+	776.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 4 of 30)	intron (NM_018797, intron 4 of 30)	39779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	10.5	7.8	11.41	7.24	15.96	11.29	6.31	10.23	12.0	3.01	17.08	5.64
Merged-chr16-29989400-2	chr16	29989285	29989485	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10261.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	4.85	8.55	3.99	4.83	13.5	10.98	9.97	13.63	8.65	12.55	16.58	10.02
Merged-chr10-127350754-1	chr10	127350654	127350854	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008382, exon 2 of 2)	exon (NM_008382, exon 2 of 2)	1094.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	10.09	1.76	5.7	2.01	11.86	8.47	7.31	6.06	13.18	3.51	6.53	6.89
Merged-chr18-82464859-3	chr18	82464747	82464947	+	776.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10276.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	6.86	6.04	10.84	11.26	5.73	11.29	5.98	12.81	13.77	12.05	14.07	14.41
Merged-chr8-46151758-3	chr8	46151652	46151852	+	776.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11899.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	14.54	9.06	11.98	25.34	21.27	12.23	12.62	8.13	11.8	7.03	11.05	14.72
Merged-chr5-41525152-3	chr5	41525045	41525245	+	776.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16B_MM|LTR|ERVK	182546.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	10.5	6.79	15.4	14.88	5.73	5.96	5.98	13.57	40.32	36.65	45.22	23.18
Merged-chr5-148707549-2	chr5	148707433	148707633	+	776.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	2.02	0.5	0.0	0.8	0.82	1.88	5.65	5.44	14.16	17.07	25.12	9.71
Merged-chr10-20349668-3	chr10	20349562	20349762	+	776.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1843.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	11.31	13.58	21.11	12.07	13.09	10.98	7.97	9.06	16.52	13.56	5.02	10.34
Merged-chr14-75136815-3	chr14	75136643	75136843	+	776.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	318.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.67	6.79	2.85	6.84	10.64	8.15	7.97	7.46	11.21	4.52	8.54	2.51
Merged-chr7-112252358-1	chr7	112252258	112252458	+	776.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	26522.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.44	5.03	2.85	0.4	5.73	8.47	6.98	8.33	0.39	1.51	0.0	0.63
Merged-chr1-144002027-1	chr1	144001927	144002127	+	776.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009061, intron 4 of 4)	intron (NM_009061, intron 4 of 4)	2122.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	9.69	10.56	5.13	7.24	5.73	5.96	2.99	6.06	9.44	12.55	13.06	9.4
Merged-chr13-95834745-2	chr13	95834650	95834850	+	776.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	L1M4|LINE|L1	57172.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	10.09	9.06	19.4	22.52	6.95	8.78	2.99	6.9	3.93	1.0	0.0	0.0
Merged-chr11-114706459-2	chr11	114706363	114706563	+	776.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-20949.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	6.14	3.76	5.65	5.3	4.92	3.01	20.6	11.9
Merged-chr10-17579942-2	chr10	17579854	17580054	+	776.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143274.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	7.67	4.78	4.56	3.22	10.23	12.23	21.26	13.43	10.23	11.55	10.05	3.45
Merged-chr1-72105676-2	chr1	72105571	72105771	+	776.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100476.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	1.62	0.0	1.71	0.0	8.18	5.64	5.98	8.58	8.85	6.03	13.06	5.64
Merged-chr8-128517877-2	chr8	128517777	128517977	+	776.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	158636.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	11.71	5.28	3.42	8.45	9.41	11.92	9.97	8.55	1.97	5.52	5.53	6.27
Merged-chr19-10022636-3	chr19	10022537	10022737	+	776.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	4443.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	25.44	12.32	11.98	10.46	27.0	6.9	6.98	32.58	14.16	20.59	11.56	9.4
Merged-chr5-143052090-2	chr5	143051990	143052190	+	776.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	60930.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	11.71	14.84	18.25	9.65	6.14	10.98	4.32	2.52	27.34	15.06	7.54	8.14
Merged-chr12-41313611-3	chr12	41313497	41313697	+	776.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172460.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	12.11	7.29	10.84	8.85	21.27	15.05	13.29	10.49	17.11	14.06	19.09	10.02
Merged-chr3-28081248-3	chr3	28081147	28081347	+	776.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 15 of 25)	intron (NM_008875, intron 15 of 25)	97076.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	9.29	10.06	15.4	3.62	8.59	13.17	14.95	11.69	9.64	10.54	13.57	10.34
Merged-chr6-146578759-3	chr6	146578655	146578855	+	776.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	844.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	5.65	11.07	3.42	7.64	4.91	14.42	5.98	7.04	14.36	4.52	10.55	19.42
Merged-chr7-143474936-3	chr7	143474792	143474992	+	776.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-224.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	13.33	10.82	9.7	8.45	11.05	13.8	15.28	15.5	7.08	8.54	5.02	7.21
Merged-chr7-114347223-3	chr7	114347116	114347316	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	67945.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	13.33	9.31	9.13	13.27	15.96	7.84	13.62	18.62	9.24	3.01	11.56	10.02
Merged-chr8-71561566-2	chr8	71561477	71561677	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145598, exon 2 of 2)	3' UTR (NM_145598, exon 2 of 2)	-2706.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	3.63	4.02	2.28	5.23	11.86	13.8	4.32	9.34	17.51	12.55	9.55	3.13
Merged-chr17-50735593-2	chr17	50735492	50735692	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285991, exon 23 of 23)	3' UTR (NM_001285991, exon 23 of 23)	36911.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.81	2.77	1.14	1.61	1.23	7.21	0.66	4.37	30.29	15.57	28.14	11.59
Merged-chr2-32487390-3	chr2	32487334	32487534	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-35964.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	4.44	9.06	9.7	8.45	9.82	5.96	16.28	7.26	9.64	18.58	11.05	6.27
Merged-chr15-41784340-2	chr15	41784250	41784450	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-4645.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.06	8.55	2.28	7.24	20.46	14.74	16.61	33.39	9.24	8.03	19.09	7.52
Merged-chr7-55961718-3	chr7	55961622	55961822	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015495)	promoter-TSS (NR_015495)	771.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.06	6.04	2.28	11.26	10.64	12.54	1.99	7.88	18.1	10.04	23.11	19.42
Merged-chr9-77921475-1	chr9	77921375	77921575	+	776.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	4110.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.85	0.25	3.42	0.4	0.82	1.88	0.0	1.74	11.01	6.53	18.59	1.88
Merged-chr11-4836926-1	chr11	4836826	4837026	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010898, intron 1 of 15)	intron (NM_010898, intron 1 of 15)	-3791.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	8.08	8.8	13.12	3.62	6.55	6.9	3.65	3.28	11.8	4.02	8.54	5.01
Merged-chr6-128798422-3	chr6	128798321	128798521	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9780.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	10.9	13.08	3.99	10.05	10.23	13.17	10.3	15.67	10.82	6.03	8.04	6.58
Merged-chr15-34356837-2	chr15	34356736	34356936	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256161, intron 1 of 3)	hAT-N1_Mam|DNA|hAT?	1036.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	5.25	3.02	13.69	9.65	3.68	7.84	9.97	10.23	3.74	2.51	7.54	2.82
Merged-chr3-87350546-1	chr3	87350446	87350646	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7335.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.23	5.53	2.85	5.23	1.23	5.33	6.31	8.3	7.47	2.01	8.54	7.21
Merged-chr6-15816689-2	chr6	15816586	15816786	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96025.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.63	7.04	7.42	4.42	1.64	3.45	12.29	8.27	7.87	4.02	8.04	7.21
Merged-chr4-148082425-1	chr4	148082325	148082525	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	5639.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	8.08	3.02	4.56	2.01	11.05	3.45	2.99	9.34	5.7	5.52	6.53	4.07
Merged-chr8-79038394-1	chr8	79038294	79038494	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9957.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.23	4.28	2.85	4.42	6.14	2.82	8.97	10.37	3.93	3.01	5.53	4.7
Merged-chr1-135682437-2	chr1	135682341	135682541	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-37622.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.85	3.02	4.56	0.0	15.55	7.53	1.99	6.11	13.57	5.02	10.05	4.07
Merged-chr3-59208195-3	chr3	59208078	59208278	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	2704.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.86	6.54	5.7	6.03	9.41	13.8	17.61	9.03	9.83	14.06	5.53	5.95
Merged-chr15-93245756-2	chr15	93245668	93245868	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033275, intron 6 of 7)	intron (NM_001033275, intron 6 of 7)	29411.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.23	4.53	14.26	13.27	2.45	7.84	2.99	10.85	2.56	3.01	2.01	1.88
Merged-chr18-62174836-2	chr18	62174752	62174952	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5129.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	13.73	10.31	9.13	4.42	11.45	9.09	3.65	4.88	4.52	8.54	4.02	2.82
Merged-chr6-71494594-1	chr6	71494494	71494694	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001308303, exon 1 of 4)	5' UTR (NM_001308303, exon 1 of 4)	717.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	8.08	5.79	10.84	6.44	3.27	10.66	10.96	6.34	9.44	12.55	10.05	11.59
Merged-chr19-45075625-2	chr19	45075560	45075760	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001362397)	promoter-TSS (NM_001362397)	419.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	6.06	5.53	10.27	15.28	10.23	9.72	7.31	6.0	11.01	5.02	10.05	15.04
Merged-chr1-154256979-2	chr1	154256845	154257045	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040629)	promoter-TSS (NR_040629)	-39.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	2.02	2.01	2.28	2.01	8.18	11.29	10.3	14.64	6.49	3.01	11.56	4.39
Merged-chr3-84820464-3	chr3	84820357	84820557	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	MER58A|DNA|hAT-Charlie	4880.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	12.11	5.53	15.4	13.27	8.59	6.27	7.97	13.82	17.31	12.05	17.59	12.84
Merged-chr5-142907356-2	chr5	142907225	142907425	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-571.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.85	6.04	2.85	5.63	6.95	7.21	3.65	1.35	5.7	10.54	11.56	8.46
Merged-chr19-5804773-1	chr19	5804673	5804873	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2101.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	14.54	6.29	2.28	3.22	14.32	5.64	2.66	11.55	6.1	6.53	5.53	5.64
Merged-chr5-72330508-2	chr5	72330415	72330615	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122756, intron 15 of 21)	intron (NM_001122756, intron 15 of 21)	127172.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.81	3.52	7.99	6.44	2.86	2.82	6.31	15.93	9.83	5.52	10.05	9.4
Merged-chr1-86007982-3	chr1	86007877	86008077	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13965.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	9.69	15.34	9.13	5.23	10.64	18.81	7.97	6.42	24.39	24.1	23.11	6.58
Merged-chr11-83580987-3	chr11	83580895	83581095	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1066.0	NR_036453	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	12.11	9.56	18.25	4.83	17.59	21.01	8.97	6.5	9.44	9.54	6.03	5.95
Merged-chr18-34119192-3	chr18	34119074	34119274	+	776.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101810.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	9.29	7.04	10.84	21.32	14.73	6.27	10.3	11.61	12.19	12.05	15.07	12.22
Merged-chr3-97929121-3	chr3	97929022	97929222	+	776.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1051.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	10.5	8.55	17.11	12.07	15.14	10.98	6.64	10.85	14.36	10.54	22.11	9.08
Merged-chrX-35931040-5	chrX	35930919	35931119	+	776.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	42187.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	5.25	2.26	0.57	4.42	5.32	3.45	2.33	3.31	12.59	12.55	8.04	4.39
Merged-chr10-87016562-3	chr10	87016481	87016681	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8639.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	7.67	10.31	11.41	8.45	7.77	5.64	5.98	15.11	13.18	5.52	10.55	10.34
Merged-chr18-49980475-3	chr18	49980460	49980660	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	1133.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.63	4.02	3.42	3.22	9.0	12.54	12.95	8.05	2.95	5.02	4.02	4.07
Merged-chr10-81135297-3	chr10	81135213	81135413	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	-958.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	11.31	11.32	10.84	6.03	9.41	10.66	4.32	5.92	9.05	6.53	11.56	6.27
Merged-chr7-43668327-3	chr7	43668210	43668410	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-3721.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	11.31	8.55	7.99	2.01	12.68	15.05	7.31	2.47	15.54	7.03	10.55	4.07
Merged-chr2-155019451-2	chr2	155019337	155019537	+	776.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5867.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	12.11	8.3	13.69	16.49	6.95	6.9	3.65	6.0	10.62	7.03	7.54	5.01
Merged-chr6-39259359-3	chr6	39259255	39259455	+	776.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52582.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	13.33	8.3	12.55	19.71	12.68	10.98	12.62	23.3	9.83	8.03	15.07	10.65
Merged-chr2-27749954-3	chr2	27749858	27750058	+	776.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39375.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	10.09	11.07	19.4	6.44	23.32	16.62	7.31	16.07	8.26	7.03	8.54	9.4
Merged-chr5-122503014-3	chr5	122502928	122503128	+	776.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-803.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	9.29	7.55	9.7	15.69	15.55	6.59	7.31	9.7	12.78	8.03	6.03	10.02
Merged-chr10-4391974-3	chr10	4391843	4392043	+	776.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.63	9.06	3.42	11.26	9.82	13.17	7.64	9.39	8.65	8.54	9.04	5.33
Merged-chrX-106013415-2	chrX	106013319	106013519	+	776.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1520.0	NM_025952	67075.0	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	10.9	6.54	6.28	2.82	7.36	10.35	6.64	9.08	12.0	19.08	11.56	2.51
Merged-chr5-3905673-2	chr5	3905569	3905769	+	776.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11736.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	3.23	6.04	3.42	9.65	7.36	9.41	14.95	17.22	6.49	8.03	15.07	6.27
Merged-chr6-100336108-3	chr6	100336009	100336209	+	776.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48751.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	7.27	12.58	11.98	5.23	8.18	20.38	8.3	5.44	14.36	9.04	19.09	11.28
Merged-chr2-164656046-2	chr2	164655936	164656136	+	776.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039501)	promoter-TSS (NM_001039501)	-10.0	NM_001039501	629756.0	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120	WAP four-disulfide core domain 10	protein-coding	3.63	3.27	9.7	6.84	11.45	11.92	8.64	7.74	17.11	21.59	12.56	10.02
Merged-chr17-31040712-3	chr17	31040622	31040822	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	9.29	5.03	7.42	9.25	29.86	19.44	11.29	24.0	10.03	12.55	8.54	9.4
Merged-chr13-69810366-3	chr13	69810269	69810469	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138596, intron 1 of 3)	intron (NM_138596, intron 1 of 3)	487.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	9.29	7.04	9.7	14.48	13.91	9.09	14.28	13.54	8.85	12.05	12.06	9.08
Merged-chr4-118083782-3	chr4	118083682	118083882	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	51164.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	16.15	6.04	5.7	12.87	11.05	21.32	3.32	11.94	6.29	17.07	14.07	7.83
Merged-chr14-66931757-1	chr14	66931657	66931857	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20549.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	3.23	0.75	2.85	4.42	6.95	5.33	13.29	9.31	7.08	4.02	9.55	6.27
Merged-chr15-55097306-1	chr15	55097206	55097406	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6815.0	NM_001355594	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	5.25	7.55	4.56	5.23	6.55	8.15	6.31	5.52	7.47	7.53	10.55	8.46
Merged-chr17-78895579-3	chr17	78895481	78895681	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163625, intron 3 of 6)	intron (NM_001163625, intron 3 of 6)	11411.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	15.75	11.57	7.99	8.85	13.5	9.41	11.63	17.41	10.62	8.03	14.07	6.89
Merged-chr19-18646609-1	chr19	18646509	18646709	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145497, intron 8 of 8)	B3A|SINE|B2	14593.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	5.25	6.04	2.28	7.24	3.27	6.59	5.65	9.36	6.69	4.52	7.54	3.76
Merged-chr1-95316177-1	chr1	95316077	95316277	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2549.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.04	2.26	6.85	7.64	7.36	6.9	7.97	6.08	4.33	1.0	5.02	6.58
Merged-chr4-126141078-1	chr4	126140978	126141178	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001145827)	TTS (NM_001145827)	-6925.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.85	4.02	7.42	6.84	13.09	2.2	10.3	6.7	2.95	5.52	13.06	2.19
Merged-chr19-56375713-3	chr19	56375597	56375797	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008733, intron 11 of 41)	B4A|SINE|B4	14341.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	13.73	4.78	4.56	15.69	7.36	8.78	10.63	14.07	7.08	11.55	13.57	7.21
Merged-chr1-95762414-3	chr1	95762302	95762502	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45884.0	NR_040479	75381.0	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	9.29	7.55	5.7	13.67	9.82	10.35	4.65	14.8	17.51	19.08	15.58	10.02
Merged-chr2-155373467-3	chr2	155373370	155373570	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-8386.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	10.09	3.27	14.83	13.67	27.0	23.2	16.94	23.24	10.23	5.52	9.55	6.89
Merged-chr12-71981447-2	chr12	71981351	71981551	+	776.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 22 of 25)	intron (NM_026102, intron 22 of 25)	89540.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	7.27	3.27	6.85	6.44	8.18	15.05	4.98	7.4	33.63	20.59	16.08	9.08
Merged-chr7-130867454-3	chr7	130867341	130867541	+	776.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 1 of 9)	intron (NM_133942, intron 1 of 9)	1717.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	8.08	11.57	13.12	11.26	11.86	11.29	9.3	19.15	13.18	10.04	12.56	8.14
Merged-chr4-155095456-3	chr4	155095367	155095567	+	776.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	8863.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	8.88	7.8	14.83	5.63	13.09	6.9	3.99	10.49	16.52	6.53	22.11	6.89
Merged-chr15-100080978-2	chr15	100080878	100081078	+	776.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 3 of 3)	RSINE1|SINE|B4	42314.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.48	10.31	6.85	6.03	9.82	7.21	8.97	8.33	10.23	15.06	11.56	13.16
Merged-chr6-90575561-2	chr6	90575467	90575667	+	776.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356412, intron 12 of 22)	intron (NM_001356412, intron 12 of 22)	24774.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	2.83	6.54	5.7	2.01	4.5	7.21	2.66	8.86	10.42	12.55	6.53	8.46
Merged-chr13-16011929-2	chr13	16011815	16012015	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	64.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	6.86	5.79	8.56	4.83	12.68	6.9	15.61	11.5	9.24	6.03	7.03	9.08
Merged-chr8-85801552-3	chr8	85801448	85801648	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028007, intron 6 of 17)	B3|SINE|B2	39401.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	4.85	10.06	5.13	13.67	17.59	8.78	12.95	12.53	8.65	2.01	9.55	8.14
Merged-chr6-134094818-3	chr6	134094723	134094923	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	59123.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.92	7.29	20.54	8.85	11.45	17.87	13.62	14.07	10.42	5.02	6.53	8.46
Merged-chr6-97456846-2	chr6	97456730	97456930	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2456.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.27	8.55	10.84	6.44	8.59	19.13	5.65	10.46	7.87	14.56	3.01	4.39
Merged-chr10-120848917-2	chr10	120848815	120849015	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-8714.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	12.11	4.78	5.7	9.25	12.27	7.84	18.27	21.56	8.06	14.06	4.52	5.95
Merged-chr2-44926539-2	chr2	44926508	44926708	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-64986.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	7.27	10.31	13.69	14.08	13.91	29.16	6.64	8.66	31.67	20.08	21.1	14.72
Merged-chr5-121712661-5	chr5	121712603	121712803	+	776.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	CpG	1094.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	8.88	10.31	6.85	5.63	3.27	2.2	4.32	6.76	5.51	8.03	3.01	7.21
Merged-chr12-10689162-2	chr12	10689050	10689250	+	776.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	242762.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	1.21	0.5	2.28	0.0	2.05	0.63	6.98	7.32	9.44	9.54	10.05	10.34
Merged-chr9-99143104-3	chr9	99142986	99143186	+	776.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2875.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	12.52	7.55	13.12	9.65	11.45	5.64	11.96	15.62	11.41	13.05	10.55	11.28
Merged-chr3-54611776-3	chr3	54611673	54611873	+	776.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81042.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	8.88	7.8	15.4	23.73	19.64	6.59	8.64	15.03	13.18	8.03	10.05	11.9
Merged-chr2-32876897-1	chr2	32876797	32876997	+	776.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	763.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	5.65	3.02	5.13	2.82	8.18	7.21	12.62	9.2	3.15	2.01	4.52	2.51
Merged-chr14-40979197-3	chr14	40979087	40979287	+	776.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12291.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.23	3.27	10.84	10.46	4.09	17.87	8.64	17.02	10.62	10.54	28.14	13.16
Merged-chr6-127149792-3	chr6	127149757	127149957	+	776.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	231.0	NR_040273	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	9.29	9.31	20.54	13.27	2.86	7.84	4.32	5.3	6.49	4.02	6.03	3.13
Merged-chr10-118101293-2	chr10	118101196	118101396	+	776.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40491.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.85	6.54	7.42	3.22	8.18	11.6	12.62	12.25	18.1	9.54	15.07	6.89
Merged-chr7-55711106-2	chr7	55711010	55711210	+	776.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57074.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	7.67	6.04	4.56	4.83	6.14	13.17	7.31	12.84	4.13	11.05	8.54	7.21
Merged-chrX-167302218-2	chrX	167302110	167302310	+	776.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28361.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	11.71	6.29	16.54	10.86	6.14	7.21	14.62	11.78	8.26	4.02	5.53	5.01
Merged-chr9-64447754-2	chr9	64447657	64447857	+	776.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	62131.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	2.42	0.25	2.85	0.8	14.32	12.23	7.64	12.36	11.41	1.0	7.54	5.95
Merged-chr4-106865575-3	chr4	106865454	106865654	+	776.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45916.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	11.71	7.04	5.13	9.25	12.68	9.09	9.63	13.74	12.19	6.53	7.03	4.7
Merged-chr4-33251919-2	chr4	33251815	33252015	+	776.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3128.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	16.15	4.02	11.98	4.83	10.23	6.9	5.31	13.29	4.72	5.02	4.52	3.13
Merged-chr6-100675103-3	chr6	100674886	100675086	+	776.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-3829.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	5.65	0.0	0.0	4.02	7.36	7.53	4.98	2.78	2.36	4.52	5.53	3.13
Merged-chr15-97059843-3	chr15	97059765	97059965	+	776.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3909.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	6.06	7.8	12.55	8.45	9.82	15.68	11.63	13.07	11.6	8.03	4.02	6.27
Merged-chr2-31726935-3	chr2	31726837	31727037	+	776.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-33002.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	10.9	8.05	5.7	22.52	9.41	12.54	8.3	9.56	22.42	13.56	13.57	8.14
Merged-chr4-145037784-3	chr4	145037683	145037883	+	776.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144646.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	14.54	6.29	10.27	19.71	9.82	7.53	17.27	21.17	6.69	6.03	14.07	9.08
Merged-chr2-71378219-2	chr2	71378098	71378298	+	776.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10644.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.27	5.28	4.56	4.83	3.27	11.6	5.31	6.36	16.92	10.54	9.55	14.1
Merged-chr4-9135957-3	chr4	9135853	9136053	+	776.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133340.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	8.88	7.55	10.84	4.42	8.59	6.9	10.3	13.43	16.92	12.55	13.06	8.46
Merged-chr8-108615977-3	chr8	108615869	108616069	+	776.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-31292.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	9.69	4.28	15.97	13.67	15.55	10.03	12.95	20.41	12.0	10.54	32.66	17.54
Merged-chr1-173694502-3	chr1	173694430	173694630	+	776.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	20850.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	8.08	6.54	10.27	7.24	16.36	6.27	6.64	9.31	14.36	10.54	23.62	6.89
Merged-chr17-27820184-1	chr17	27820084	27820284	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001271511, exon 1 of 4)	exon (NM_001271511, exon 1 of 4)	358.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	9.29	15.09	2.85	12.87	10.23	11.92	5.98	5.66	13.77	16.57	16.58	14.1
Merged-chr8-108320646-2	chr8	108320553	108320753	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	264024.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.04	4.53	0.0	5.63	3.68	8.78	5.98	4.99	11.6	8.54	12.06	3.13
Merged-chr19-47507213-1	chr19	47507113	47507313	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-5769.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	4.44	4.53	1.14	2.82	7.36	3.45	1.0	3.39	4.33	2.51	0.5	1.57
Merged-chr19-32279709-2	chr19	32279602	32279802	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-68689.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	10.5	2.26	13.69	7.64	9.41	6.59	7.64	19.35	7.28	4.02	4.02	2.19
Merged-chr18-52768339-1	chr18	52768239	52768439	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001199154, exon 1 of 11)	5' UTR (NM_001199154, exon 1 of 11)	195.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	5.65	3.02	5.13	2.41	6.95	7.21	1.99	5.61	7.67	5.02	6.03	1.57
Merged-chr13-102052399-1	chr13	102052299	102052499	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-284182.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	1.62	1.76	1.14	1.21	5.73	4.08	1.66	3.28	6.1	2.01	2.01	2.51
Merged-chr15-62448541-1	chr15	62448441	62448641	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-229090.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	3.23	2.77	11.41	2.01	2.86	8.47	4.98	8.61	7.08	0.5	2.01	3.13
Merged-chr3-133111920-1	chr3	133111820	133112020	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027927)	TTS (NM_027927)	-19881.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	8.08	4.53	6.28	7.24	1.64	5.64	7.64	7.88	4.72	4.52	10.05	4.07
Merged-chr15-58020325-1	chr15	58020225	58020425	+	776.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13969.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	8.08	3.02	1.14	0.8	6.95	7.53	4.98	3.5	13.18	14.56	9.55	7.21
Merged-chr2-132007652-1	chr2	132007552	132007752	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	22336.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	8.48	4.28	5.7	0.0	7.77	9.72	11.63	3.95	10.82	8.03	4.52	1.57
Merged-chr7-120843510-2	chr7	120843387	120843587	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001267710)	promoter-TSS (NM_001267710)	-113.0	NM_001267710	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	10.09	8.3	3.99	10.05	11.05	4.7	7.31	7.77	3.93	9.04	9.55	9.71
Merged-chr18-64430256-1	chr18	64430156	64430356	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58842.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	2.02	4.78	0.57	3.22	3.27	1.88	6.64	6.56	12.98	2.01	5.53	2.82
Merged-chr11-70516550-1	chr11	70516450	70516650	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1934.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	12.52	5.03	5.7	2.41	4.91	8.78	1.0	6.53	5.51	5.02	6.03	7.21
Merged-chr1-192081232-1	chr1	192081132	192081332	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	11367.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	6.06	5.53	7.99	6.44	12.68	8.15	10.96	7.29	7.87	3.51	5.02	3.76
Merged-chr13-20112803-1	chr13	20112703	20112903	+	776.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	22296.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.25	1.14	0.0	0.82	0.0	0.0	0.0	13.18	11.05	23.11	7.52
Merged-chr17-83687257-2	chr17	83687163	83687363	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-18900.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	2.02	3.02	2.85	2.41	9.41	2.51	8.3	10.79	7.67	5.52	13.06	7.83
Merged-chr11-98889347-1	chr11	98889247	98889447	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197940, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-18542.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	2.42	1.51	13.69	6.03	16.36	10.66	5.31	1.91	4.72	10.54	7.03	5.33
Merged-chr13-93899832-1	chr13	93899732	93899932	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	MLT1A1|LTR|ERVL-MaLR	109055.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	5.65	1.76	2.85	3.62	5.73	7.84	1.99	5.21	1.77	3.51	1.51	2.51
Merged-chr17-33997555-1	chr17	33997455	33997655	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001347346, exon 4 of 8)	exon (NM_001347346, exon 4 of 8)	2778.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	11.31	10.82	5.13	8.45	1.64	3.45	0.66	0.87	5.11	5.02	4.52	2.82
Merged-chr14-68580960-1	chr14	68580860	68581060	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021475, intron 1 of 13)	intron (NM_021475, intron 1 of 13)	1112.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	2.42	3.77	0.0	1.61	0.0	0.63	6.64	6.87	7.67	2.01	5.02	1.57
Merged-chr3-8738869-1	chr3	8738769	8738969	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71831.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.85	1.76	1.14	2.01	6.14	2.2	9.3	8.58	4.72	1.0	8.54	1.25
Merged-chr19-46960373-1	chr19	46960273	46960473	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	ID4_|SINE|ID	1978.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	9.69	4.78	5.13	4.02	8.59	4.08	3.65	7.77	4.92	10.54	2.51	4.39
Merged-chrX-103695958-1	chrX	103695858	103696058	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65372.0	NM_029158	75064.0	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	3.63	2.26	2.28	1.61	6.95	1.57	3.65	8.05	5.51	8.03	5.53	5.01
Merged-chr12-25150875-1	chr12	25150775	25150975	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21701.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.42	3.02	2.28	3.22	8.18	3.14	2.99	8.44	3.34	2.01	2.01	5.64
Merged-chr18-24466994-2	chr18	24466872	24467072	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3899.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.81	5.03	2.85	6.44	7.36	3.76	5.65	8.75	4.13	6.53	10.55	8.14
Merged-chr2-11332067-1	chr2	11331967	11332167	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7422.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	2.02	6.54	0.0	2.41	6.14	9.72	6.31	5.55	5.9	7.03	5.02	2.19
Merged-chr13-112532899-1	chr13	112532799	112532999	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	47763.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.4	1.51	9.13	3.22	6.14	0.94	9.3	7.15	6.49	4.52	20.6	6.58
Merged-chr1-87907479-1	chr1	87907379	87907579	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177646, intron 3 of 29)	L1MD1|LINE|L1	-53180.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	1.62	3.02	5.7	8.04	7.36	7.53	1.0	7.01	5.9	4.52	14.07	3.45
Merged-chr10-70095180-2	chr10	70095097	70095297	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1924.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	5.65	3.52	3.42	10.86	8.18	6.27	12.95	10.37	5.9	11.55	12.56	8.77
Merged-chr8-70565616-1	chr8	70565516	70565716	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	25941.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.02	0.0	0.0	0.0	3.68	8.78	0.66	6.34	2.36	2.01	3.01	0.94
Merged-chr11-103409260-1	chr11	103409160	103409360	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	3404.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	2.83	4.28	1.71	4.02	3.68	8.78	5.65	5.13	7.67	3.51	2.51	7.52
Merged-chrX-96290909-1	chrX	96290809	96291009	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177789, intron 1 of 6)	intron (NM_177789, intron 1 of 6)	2529.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	3.23	1.01	1.14	5.23	1.64	2.82	6.64	7.29	3.34	6.53	11.05	1.57
Merged-chrX-94129161-1	chrX	94129061	94129261	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5394.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	5.65	3.52	3.42	8.04	6.55	7.21	4.65	8.33	10.23	4.02	4.52	3.76
Merged-chr9-44482306-2	chr9	44482199	44482399	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-526.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	11.71	5.28	7.99	6.44	9.0	8.47	2.99	12.22	10.62	9.04	10.55	3.76
Merged-chr3-41580072-3	chr3	41579976	41580176	+	775.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	15196.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	11.31	9.06	11.41	7.24	20.46	7.53	13.29	10.74	13.96	5.02	12.06	5.33
Merged-chr3-9128573-2	chr3	9128465	9128665	+	775.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66601.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	8.88	7.04	3.99	4.83	13.91	13.17	8.97	18.93	6.29	14.06	11.56	4.39
Merged-chr12-102448418-2	chr12	102448265	102448465	+	775.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-8552.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.88	2.26	11.41	3.62	4.09	6.9	5.98	11.16	3.34	4.02	3.52	3.13
Merged-chr8-94810187-3	chr8	94810081	94810281	+	775.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011332)	promoter-TSS (NM_011332)	-272.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	8.08	8.3	9.13	15.28	9.82	7.84	14.28	10.15	16.72	15.06	23.11	10.34
Merged-chr5-124011618-2	chr5	124011533	124011733	+	775.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	14781.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	5.25	6.29	3.42	5.63	3.68	10.98	2.33	6.56	12.59	10.04	11.56	8.46
Merged-chr1-178338404-2	chr1	178338332	178338532	+	775.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-617.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	5.65	3.02	2.28	2.82	10.23	5.02	6.31	5.1	11.6	11.55	10.55	3.76
Merged-chr1-31050450-2	chr1	31050367	31050567	+	775.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136907, intron 1 of 3)	intron (NR_136907, intron 1 of 3)	45987.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	4.85	6.79	18.83	8.45	3.68	1.88	5.98	7.26	13.77	16.57	30.15	17.23
Merged-chr9-37147371-2	chr9	37147263	37147463	+	775.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_148950)	promoter-TSS (NM_148950)	-41.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	10.5	10.82	3.99	9.25	6.55	5.02	8.3	9.45	5.31	4.02	8.54	1.88
Merged-chr15-39735367-3	chr15	39735262	39735462	+	775.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10568.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	9.29	3.52	9.7	12.47	14.32	16.93	12.95	23.36	13.37	9.04	20.1	6.58
Merged-chr10-79882150-3	chr10	79882077	79882277	+	775.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011178, intron 4 of 4)	CpG	2510.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	7.67	6.54	6.85	12.07	12.68	5.33	10.63	11.3	5.31	9.04	7.54	7.83
Merged-chr7-3715467-3	chr7	3715367	3715567	+	775.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357394, intron 9 of 14)	intron (NM_001357394, intron 9 of 14)	4915.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	9.29	12.07	11.41	5.63	19.23	8.15	4.98	8.24	21.64	23.6	12.56	8.46
Merged-chr12-100520482-2	chr12	100520410	100520610	+	775.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 1 of 19)	CpG	312.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	7.27	13.58	2.28	3.62	9.0	15.68	12.29	13.12	11.6	8.03	6.53	7.21
Merged-chr10-125371641-3	chr10	125371540	125371740	+	775.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42677.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	14.13	5.03	5.7	9.25	5.32	8.47	6.98	17.66	7.87	14.06	17.08	4.39
Merged-chr16-33023991-3	chr16	33023873	33024073	+	775.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178378, intron 8 of 10)	LTR41B|LTR|ERVL	32213.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	8.48	10.56	10.27	5.63	16.36	12.54	5.31	6.39	7.28	14.06	15.58	10.96
Merged-chr15-59568813-2	chr15	59568732	59568932	+	775.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-79822.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.04	6.29	4.56	3.22	7.36	10.66	1.99	8.19	10.82	11.55	13.57	6.58
Merged-chr19-4215402-1	chr19	4215302	4215502	+	775.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310039, intron 1 of 2)	CpG	1013.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	4.04	3.27	0.0	5.23	4.09	8.15	3.65	4.4	4.72	12.05	5.53	6.27
Merged-chr18-26932466-2	chr18	26932360	26932560	+	775.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-1178303.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.21	5.53	13.12	8.45	12.27	6.59	8.3	9.2	8.06	3.01	15.07	4.39
Merged-chr4-119124991-3	chr4	119124889	119125089	+	775.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	MIR3|SINE|MIR	16244.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.63	6.54	15.4	14.88	2.45	10.03	7.31	4.63	29.5	30.63	66.33	34.77
Merged-chr6-123262088-2	chr6	123261985	123262185	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-22.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	7.27	9.06	1.14	2.41	12.27	10.03	14.28	9.73	10.03	10.54	17.08	2.82
Merged-chr7-98869251-3	chr7	98869135	98869335	+	775.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30390.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	13.73	5.03	18.83	12.07	5.73	13.17	4.65	7.93	11.21	11.05	18.09	10.65
Merged-chr11-106663834-1	chr11	106663734	106663934	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50904.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.44	3.52	2.85	2.82	10.23	6.27	6.31	6.17	7.08	5.02	6.03	3.76
Merged-chr8-36016542-1	chr8	36016442	36016642	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78286.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	2.42	1.51	7.42	5.23	6.14	7.84	6.98	9.45	1.97	0.0	1.0	2.19
Merged-chr4-33033108-1	chr4	33033008	33033208	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355494, intron 1 of 6)	B3|SINE|B2	1728.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	6.46	1.01	7.99	7.24	5.32	5.33	11.29	11.33	2.95	5.52	4.02	7.83
Merged-chr1-106241610-1	chr1	106241510	106241710	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	69741.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.65	6.29	5.7	11.66	8.59	5.96	9.97	8.3	2.56	1.0	12.06	5.01
Merged-chr19-21032744-1	chr19	21032644	21032844	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71966.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.42	1.51	3.42	1.21	9.0	14.42	5.31	6.08	6.49	12.05	2.51	5.01
Merged-chr16-31022467-3	chr16	31022367	31022567	+	775.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	58965.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.83	6.29	10.27	11.66	6.55	11.29	6.98	10.37	10.42	1.51	14.07	4.39
Merged-chr15-25047987-2	chr15	25047859	25048059	+	775.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	365805.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.46	3.27	6.85	8.04	1.64	3.76	10.63	8.41	10.62	10.54	12.06	7.83
Merged-chr1-160280798-2	chr1	160280694	160280894	+	775.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	15178.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	4.04	5.28	5.7	2.41	11.45	7.84	9.97	21.06	10.62	6.03	29.14	7.52
Merged-chr1-84286388-2	chr1	84286294	84286494	+	775.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1749.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	18.57	9.31	18.83	7.24	22.09	10.35	10.3	8.24	16.33	5.52	9.04	5.01
Merged-chr5-88698831-2	chr5	88698718	88698918	+	775.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22053.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	3.23	3.77	9.13	4.42	4.09	5.02	5.31	8.78	11.41	6.53	12.56	6.89
Merged-chr7-130669273-3	chr7	130669177	130669377	+	775.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-23279.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	14.13	8.3	10.27	16.49	7.77	6.27	17.94	15.56	10.82	16.07	12.06	11.28
Merged-chrUn_JH584304-42388-1	chrUn_JH584304	42288	42488	+	775.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17301.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.59	17.07	12.56	7.21
Merged-chr4-123432121-3	chr4	123432012	123432212	+	775.5722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001199136, exon 57 of 98)	exon (NM_001199136, exon 57 of 98)	-20201.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	4.85	8.05	11.98	8.04	12.27	8.47	4.98	8.75	16.92	9.54	15.07	9.4
Merged-chr5-66144451-3	chr5	66144342	66144542	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	6536.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	8.08	9.56	11.41	9.65	4.09	1.88	3.99	8.07	16.52	9.04	25.63	16.92
Merged-chr10-95973479-3	chr10	95973380	95973580	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	32817.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	11.71	10.56	15.97	4.02	14.73	20.07	4.32	4.01	9.83	12.05	6.03	3.13
Merged-chr2-30266481-3	chr2	30266393	30266593	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281829)	promoter-TSS (NM_001281829)	-228.0	NM_001281829	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	17.77	16.35	8.56	6.03	2.45	16.31	4.32	7.85	13.37	8.54	13.06	9.08
Merged-chr3-88242717-3	chr3	88242642	88242842	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021375)	TTS (NM_021375)	11942.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	13.33	10.06	1.71	6.44	7.36	12.54	3.32	5.75	14.16	9.54	11.05	7.21
Merged-chr12-85344392-2	chr12	85344305	85344505	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5043.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	8.88	5.03	11.41	1.61	5.32	6.27	3.65	1.6	19.67	20.59	22.61	18.8
Merged-chr16-4905295-1	chr16	4905195	4905395	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	19195.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.23	3.02	1.14	0.8	8.59	6.9	7.31	8.02	1.97	7.03	4.52	9.4
Merged-chr16-36725270-2	chr16	36725187	36725387	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	31309.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	5.25	4.53	21.11	8.04	5.32	8.47	3.32	4.79	11.6	5.02	13.06	1.57
Merged-chr4-133204577-2	chr4	133204451	133204651	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7985.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	9.29	4.53	5.7	8.04	4.5	5.02	5.98	5.21	4.72	7.03	1.0	5.33
Merged-chr7-110117005-1	chr7	110116905	110117105	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5054.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	7.27	2.52	1.14	4.83	9.41	4.39	4.65	9.0	2.16	8.03	13.06	4.39
Merged-chr5-121204916-2	chr5	121204815	121205015	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011290, intron 1 of 6)	CpG	414.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	7.67	11.82	9.13	2.41	10.23	13.17	10.3	12.14	11.41	11.55	8.54	11.28
Merged-chr14-15064333-2	chr14	15064234	15064434	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243519.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	2.42	5.79	3.42	2.41	1.64	3.76	6.98	10.37	9.44	3.01	9.55	3.45
Merged-chr17-50185783-1	chr17	50185683	50185883	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	4714.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.42	4.28	4.56	4.83	4.5	6.59	6.31	9.98	7.67	1.51	8.04	4.7
Merged-chr15-93399360-1	chr15	93399260	93399460	+	775.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001358749, exon 2 of 9)	5' UTR (NM_001358749, exon 2 of 9)	896.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	6.06	4.02	3.42	1.61	0.82	2.51	3.65	2.97	6.88	5.02	7.03	9.71
Merged-chr14-32169064-1	chr14	32168964	32169164	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	3275.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.46	5.03	6.85	3.22	4.91	3.14	3.65	9.87	6.49	5.02	9.04	1.57
Merged-chr2-144720645-2	chr2	144720547	144720747	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-103019.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	1.62	4.28	10.84	6.44	14.73	15.99	24.91	29.3	2.75	7.53	11.05	7.52
Merged-chr13-20428853-2	chr13	20428748	20428948	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-44142.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.62	2.77	10.27	8.45	8.18	4.39	8.64	20.1	0.79	1.51	1.51	0.63
Merged-chr13-108057035-1	chr13	108056935	108057135	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127346, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	12561.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	3.23	6.54	3.42	5.23	7.36	4.08	6.98	8.72	3.93	0.5	4.02	2.82
Merged-chr17-23630419-2	chr17	23630322	23630522	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001320258, exon 10 of 10)	3' UTR (NM_001320258, exon 10 of 10)	14847.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	8.08	14.09	10.84	9.65	5.73	10.35	10.3	11.64	5.51	5.52	24.12	5.64
Merged-chr3-41530855-1	chr3	41530755	41530955	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2381.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	2.42	2.77	2.28	2.01	8.18	7.84	5.98	12.17	3.15	2.01	4.02	7.21
Merged-chr7-4938714-2	chr7	4938664	4938864	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173008, intron 12 of 13)	B3|SINE|B2	12920.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	2.02	4.02	2.28	2.82	0.82	4.08	6.31	0.93	7.47	9.54	1.51	7.21
Merged-chr13-51138058-2	chr13	51137949	51138149	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	3731.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	11.31	1.76	4.56	10.46	4.5	3.14	8.64	10.96	7.87	6.03	8.54	1.88
Merged-chr1-172004533-2	chr1	172004432	172004632	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	22763.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	9.69	6.54	5.13	1.61	17.59	13.17	8.3	5.3	3.54	15.57	4.52	2.82
Merged-chr17-66121715-1	chr17	66121615	66121815	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1805.0	NM_001003919	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	5.65	3.27	5.13	1.61	10.23	3.45	3.99	6.79	2.56	5.02	9.04	5.01
Merged-chr18-61095701-3	chr18	61095606	61095806	+	775.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9866.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	13.73	3.77	11.41	13.67	6.95	10.98	7.64	10.4	15.34	11.05	27.64	7.83
Merged-chr4-55598176-3	chr4	55598064	55598264	+	775.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65689.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.04	2.01	17.11	8.45	7.77	8.78	9.97	7.57	9.64	3.51	19.09	9.4
Merged-chr3-40694662-2	chr3	40694543	40694743	+	775.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175515, intron 13 of 15)	LTR16A|LTR|ERVL	-14228.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	7.27	5.03	5.7	17.29	15.55	6.59	8.64	19.65	11.41	13.05	16.58	7.52
Merged-chr12-26454853-3	chr12	26454745	26454945	+	775.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1607.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	15.34	20.37	3.42	1.21	11.86	23.83	6.98	5.5	8.65	13.56	9.55	4.39
Merged-chr2-45231044-3	chr2	45230995	45231195	+	775.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113653.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.67	2.01	10.84	2.82	15.14	12.86	7.64	10.07	9.24	12.05	11.56	4.07
Merged-chr7-4207322-3	chr7	4207224	4207424	+	775.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30430.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.85	9.56	10.27	3.62	7.77	15.99	19.93	18.62	13.77	13.05	22.61	10.96
Merged-chr4-132158445-3	chr4	132158333	132158533	+	775.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13947.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	5.25	8.8	10.27	7.64	12.27	6.27	3.99	5.36	11.01	11.05	5.02	7.83
Merged-chr3-135211883-2	chr3	135211764	135211964	+	775.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-699.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	2.42	7.29	5.13	3.62	9.41	7.21	7.31	6.81	6.49	10.04	11.05	10.34
Merged-chr5-148473220-3	chr5	148473119	148473319	+	775.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-73315.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	17.77	4.02	16.54	11.26	9.0	11.6	20.93	25.29	19.87	12.05	16.58	5.95
Merged-chr1-179960422-2	chr1	179960307	179960507	+	775.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-353.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	3.23	11.07	4.56	12.07	12.27	7.53	5.31	10.51	7.47	5.52	4.02	4.39
Merged-chr2-148407556-3	chr2	148407456	148407656	+	775.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	632.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	8.48	3.52	8.56	20.51	8.59	7.53	13.29	19.21	8.26	13.05	10.05	5.95
Merged-chr15-25282092-3	chr15	25281995	25282195	+	775.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	131669.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.48	7.04	3.99	7.64	11.05	6.59	10.63	13.09	16.13	14.06	19.09	9.71
Merged-chr7-125878187-2	chr7	125878078	125878278	+	775.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101488)	TTS (NM_001101488)	170308.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	8.88	2.52	4.56	5.23	15.55	6.27	8.64	15.2	12.19	6.53	15.58	9.4
Merged-chr16-29597325-2	chr16	29597245	29597445	+	775.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133752, intron 5 of 28)	intron (NM_133752, intron 5 of 28)	18011.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	6.06	9.56	3.42	9.65	9.0	9.41	9.3	16.6	4.52	5.52	2.01	3.45
Merged-chr8-40311283-2	chr8	40311190	40311390	+	775.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	3239.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	6.46	2.01	15.4	4.83	5.32	7.84	10.96	6.93	17.31	12.55	28.64	7.21
Merged-chr4-82933818-2	chr4	82933715	82933915	+	775.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154662, intron 26 of 35)	intron (NR_154662, intron 26 of 35)	-48664.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	7.27	9.81	7.42	8.04	4.09	11.6	10.3	9.56	7.87	5.02	6.03	5.01
Merged-chrX-48054612-2	chrX	48054457	48054657	+	775.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19704.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	3.23	3.77	1.14	9.65	6.55	9.72	9.97	7.63	4.33	4.02	3.52	1.57
Merged-chr12-8902811-3	chr12	8902710	8902910	+	775.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-18497.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	10.5	13.83	9.7	9.65	15.14	11.29	13.62	2.61	16.13	20.08	10.55	8.77
Merged-chr4-63417493-3	chr4	63417392	63417592	+	775.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008791, intron 10 of 12)	intron (NM_001008791, intron 10 of 12)	-14047.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	10.09	11.82	4.56	8.04	18.82	7.84	8.3	7.93	14.95	12.55	12.56	11.9
Merged-chr16-52056482-4	chr16	52056470	52056670	+	775.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	MER58A|DNA|hAT-Charlie	25021.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.63	4.53	9.7	10.46	3.68	5.02	5.65	4.01	6.88	5.02	4.52	3.76
Merged-chr3-51701551-3	chr3	51701445	51701645	+	775.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	40366.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	10.09	12.83	1.14	4.02	15.14	15.99	7.97	12.39	5.11	9.04	10.55	4.07
Merged-chr3-51270163-3	chr3	51270066	51270266	+	775.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6595.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	5.65	8.8	13.69	8.85	5.73	5.33	10.63	8.89	11.8	9.54	16.58	6.27
Merged-chr3-21118342-1	chr3	21118242	21118442	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-751165.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	6.86	7.29	22.82	21.32	0.0	0.0	1.33	1.32	3.74	2.51	0.0	0.63
Merged-chrUn_JH584304-73149-1	chrUn_JH584304	73049	73249	+	775.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-13460.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	8.26	18.58	12.56	9.08
Merged-chr15-31447398-1	chr15	31447298	31447498	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145852, intron 3 of 4)	intron (NM_145852, intron 3 of 4)	6291.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	8.48	4.28	1.14	4.02	6.95	11.6	6.98	7.79	7.87	11.55	7.03	5.01
Merged-chr6-42324601-1	chr6	42324501	42324701	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	39.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	4.85	4.28	3.99	2.41	2.05	3.76	7.31	3.76	5.31	2.01	3.52	4.07
Merged-chr5-122652643-2	chr5	122652551	122652751	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	2227.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.85	11.32	18.25	9.65	11.45	7.53	6.98	11.44	4.52	4.02	7.54	3.76
Merged-chr15-34444355-2	chr15	34444297	34444497	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1121.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	8.48	6.29	2.85	6.44	6.14	5.96	1.0	7.35	4.13	3.51	3.52	5.33
Merged-chr2-19301456-2	chr2	19301338	19301538	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-42879.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	1.21	6.04	5.7	8.45	10.23	8.78	3.32	11.16	9.64	10.54	9.04	3.76
Merged-chr11-100737342-2	chr11	100737248	100737448	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	867.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	6.46	5.79	12.55	4.02	7.36	10.98	6.64	6.84	8.06	2.51	6.03	11.59
Merged-chr10-34416099-2	chr10	34416001	34416201	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176968, intron 1 of 11)	RMER6A|LTR|ERVK	2450.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	5.65	6.04	15.4	2.41	14.73	5.02	6.64	5.66	13.77	9.04	10.55	9.71
Merged-chr16-36602840-2	chr16	36602751	36602951	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40717.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	3.23	8.8	22.82	15.28	1.23	1.88	1.99	3.98	21.44	7.53	14.57	7.21
Merged-chr13-98817424-3	chr13	98817322	98817522	+	775.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1973.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	11.71	7.55	10.27	6.44	15.55	10.35	5.65	5.16	17.7	13.05	18.09	9.08
Merged-chr19-60144576-3	chr19	60144529	60144729	+	775.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026942)	promoter-TSS (NR_026942)	-46.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	10.5	9.06	11.98	10.05	3.68	5.33	6.98	7.88	13.37	7.03	8.04	4.7
Merged-chr3-52844229-3	chr3	52844157	52844357	+	775.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83409.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	6.06	8.8	17.11	9.65	10.23	16.93	4.98	10.74	16.92	13.05	18.59	9.08
Merged-chr6-125162157-3	chr6	125162058	125162258	+	775.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302779)	TTS (NM_001302779)	3615.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	9.69	14.34	7.42	13.27	5.32	9.41	7.97	9.0	17.31	15.06	19.09	11.59
Merged-chr2-60928056-3	chr2	60927947	60928147	+	775.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	35157.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.67	3.27	6.85	5.63	4.09	9.72	1.66	16.35	17.7	6.53	12.06	7.52
Merged-chr11-79877374-2	chr11	79877282	79877482	+	775.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	85005.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.25	4.02	5.7	10.86	21.68	9.72	19.93	21.17	4.13	6.53	13.06	11.59
Merged-chr11-116626573-2	chr11	116626457	116626657	+	775.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	462.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.44	5.03	7.99	14.88	9.41	8.78	15.94	15.11	11.6	7.03	14.07	10.65
Merged-chr5-96993327-2	chr5	96993219	96993419	+	775.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4370.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	1.01	0.0	0.0	14.32	12.86	7.97	11.21	10.03	13.05	11.05	1.88
Merged-chr8-41045283-2	chr8	41045177	41045377	+	775.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	L1M3|LINE|L1	-3346.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.85	9.31	10.27	8.45	13.09	12.86	9.63	24.08	6.29	10.54	3.01	8.14
Merged-chr11-6484558-5	chr11	6484481	6484681	+	775.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8505.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	3.23	1.76	7.42	13.27	4.5	5.64	3.65	3.2	10.42	6.53	5.53	3.45
Merged-chr5-43870196-3	chr5	43870138	43870338	+	775.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	1429.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.04	8.3	7.99	8.85	3.68	15.37	12.95	7.15	6.49	10.04	12.56	6.89
Merged-chr14-51090221-3	chr14	51090099	51090299	+	775.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-878.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	13.33	3.77	10.27	9.25	6.14	7.84	7.31	8.64	8.65	13.05	6.03	4.7
Merged-chr16-76695116-3	chr16	76695001	76695201	+	775.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83991.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	10.09	7.29	14.26	16.49	10.64	9.09	9.3	12.45	10.42	14.06	17.59	13.78
Merged-chr14-62027873-2	chr14	62027768	62027968	+	775.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265111.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.23	4.28	2.28	6.03	15.14	8.78	18.27	12.84	11.6	7.03	12.06	9.4
Merged-chr15-28395867-3	chr15	28395773	28395973	+	775.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 58 of 78)	intron (NM_133365, intron 58 of 78)	192107.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	10.5	4.53	9.13	17.29	9.41	8.15	12.95	22.91	24.0	21.59	22.61	7.21
Merged-chr13-102678705-3	chr13	102678600	102678800	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14847.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	8.48	11.57	10.84	12.07	11.05	14.74	5.65	10.63	19.28	14.06	22.61	9.71
Merged-chr13-116957821-3	chr13	116957729	116957929	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67687.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	12.52	19.12	25.1	23.33	9.82	6.9	6.98	15.62	16.92	7.03	11.05	4.07
Merged-chr11-5273058-3	chr11	5272955	5273155	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-11445.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	19.38	6.79	6.85	10.86	4.5	20.38	9.63	11.83	9.64	7.53	11.05	9.71
Merged-chrX-96293430-3	chrX	96293286	96293486	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177789)	promoter-TSS (NM_177789)	52.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	2.02	0.25	10.84	12.47	5.73	5.96	13.29	16.63	9.83	2.51	16.58	6.27
Merged-chr1-179959934-2	chr1	179959848	179960048	+	775.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-812.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	6.46	7.04	12.55	6.44	8.18	13.48	3.65	8.33	5.7	0.0	14.07	1.25
Merged-chr5-118575111-3	chr5	118575006	118575206	+	775.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 1 of 30)	intron (NM_001347445, intron 1 of 30)	14387.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	14.54	11.32	17.11	14.88	6.14	9.41	15.28	13.82	10.03	3.01	24.12	10.96
Merged-chr15-103169135-3	chr15	103168997	103169197	+	775.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5813.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	11.71	5.28	13.12	7.24	8.18	13.17	5.65	7.35	9.64	6.53	8.54	6.58
Merged-chr17-17392015-2	chr17	17391920	17392120	+	775.025024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025934, intron 9 of 9)	intron (NM_025934, intron 9 of 9)	-10666.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.06	3.52	4.56	2.01	9.82	7.21	5.31	6.03	18.88	15.06	11.05	8.77
Merged-chr8-13632563-1	chr8	13632463	13632663	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	45024.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.63	2.77	5.7	8.45	6.55	2.82	4.32	10.6	4.92	3.51	4.02	3.13
Merged-chr1-88259351-2	chr1	88259236	88259436	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	10072.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	2.02	5.79	0.57	4.42	9.0	2.51	3.32	6.2	7.87	3.01	4.52	8.14
Merged-chr2-32318180-1	chr2	32318080	32318280	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029811)	promoter-TSS (NR_029811)	-85.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	4.44	3.52	3.42	4.83	4.91	6.59	4.32	8.58	5.11	3.51	3.52	2.19
Merged-chr4-134920853-1	chr4	134920753	134920953	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-2772.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	14.13	11.57	7.99	7.24	0.82	2.51	1.33	1.74	2.56	3.51	0.0	0.94
Merged-chr9-116126713-1	chr9	116126613	116126813	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	48650.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.65	2.01	9.7	15.69	2.86	5.96	9.97	9.95	1.57	0.0	0.0	1.25
Merged-chr9-63714899-2	chr9	63714794	63714994	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	L1MB7|LINE|L1	43100.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.63	3.77	9.13	6.44	1.64	4.7	10.96	13.77	8.65	3.51	3.52	7.21
Merged-chr10-59296446-3	chr10	59296335	59296535	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26861.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	11.31	4.53	1.71	8.85	6.14	21.01	6.31	9.39	10.42	5.02	5.53	11.9
Merged-chr3-27743456-1	chr3	27743356	27743556	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33004.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	2.01	1.14	0.4	6.14	6.27	6.64	6.56	5.51	3.51	6.03	0.63
Merged-chr3-127949077-3	chr3	127948996	127949196	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32925.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	10.5	8.3	17.68	6.84	7.36	13.8	8.64	7.21	6.29	9.04	14.57	9.4
Merged-chr8-84857387-2	chr8	84857308	84857508	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152751, intron 1 of 12)	intron (NR_152751, intron 1 of 12)	422.0	NM_025648	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	8.48	6.54	6.85	3.22	5.32	15.99	11.63	8.55	14.95	12.05	16.58	3.76
Merged-chr2-33430210-1	chr2	33430110	33430310	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085507, intron 1 of 2)	intron (NM_001085507, intron 1 of 2)	1114.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	1.62	3.52	2.28	6.03	2.86	3.14	6.31	6.76	1.57	6.53	6.03	1.57
Merged-chr10-96408014-1	chr10	96407914	96408114	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181807.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	1.76	6.28	4.42	4.5	5.33	7.64	9.48	7.67	3.51	5.53	4.39
Merged-chr12-108293105-1	chr12	108293005	108293205	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13165.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	5.65	4.02	15.97	10.86	0.41	3.14	1.33	2.41	3.74	1.0	1.51	0.31
Merged-chr3-123236124-1	chr3	123236024	123236224	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_080451)	promoter-TSS (NM_080451)	25.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	2.02	5.03	6.28	2.41	3.68	4.08	7.97	6.11	2.16	0.5	1.51	2.51
Merged-chr12-109509250-2	chr12	109509187	109509387	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31709.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	1.21	2.77	3.42	6.03	6.55	6.27	7.97	5.55	10.62	11.05	8.04	6.58
Merged-chr7-30219394-2	chr7	30219302	30219502	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11989.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	2.42	3.02	2.85	1.21	5.32	3.45	1.33	5.07	16.72	15.57	14.57	10.02
Merged-chr4-33189096-1	chr4	33188996	33189196	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	641.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	6.06	6.54	5.13	6.03	2.86	5.96	7.31	12.11	7.67	8.54	5.53	8.14
Merged-chr7-25782228-1	chr7	25782128	25782328	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	6505.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	8.08	1.26	5.13	8.85	11.86	0.94	4.65	5.83	4.13	5.52	12.06	6.27
Merged-chr8-91108359-1	chr8	91108259	91108459	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011250, intron 17 of 21)	L1M4b|LINE|L1	25380.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.0	1.01	0.0	0.8	1.23	0.63	3.32	0.73	0.79	5.52	0.0	0.63
Merged-chr9-87171275-2	chr9	87171159	87171359	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	22031.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	9.29	5.03	17.11	11.26	9.0	8.47	5.98	9.93	13.18	3.51	12.56	7.52
Merged-chr1-123544566-2	chr1	123544467	123544667	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	500992.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.85	6.29	13.69	17.29	4.09	6.59	5.31	10.04	3.34	4.02	4.52	3.13
Merged-chr10-88740067-1	chr10	88739967	88740167	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025859, intron 4 of 5)	ORR1D2|LTR|ERVL-MaLR	8653.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	5.25	4.53	4.56	10.46	6.55	7.21	4.32	6.9	5.11	6.53	10.05	10.96
Merged-chr13-28502310-3	chr13	28502202	28502402	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	208571.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	16.15	14.84	6.85	7.24	9.0	10.66	8.64	5.58	8.85	4.52	8.04	9.08
Merged-chr3-145925679-1	chr3	145925579	145925779	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	1417.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	5.25	2.52	0.57	1.61	6.14	8.78	6.64	6.7	6.69	9.04	10.05	2.82
Merged-chr11-117150650-2	chr11	117150545	117150745	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166506, exon 12 of 16)	exon (NM_001166506, exon 12 of 16)	35473.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	13.33	2.26	5.13	5.63	18.0	10.35	4.98	13.71	7.67	8.03	4.02	6.89
Merged-chr11-105978771-1	chr11	105978671	105978871	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281819, intron 15 of 23)	intron (NM_001281819, intron 15 of 23)	3563.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.0	2.01	2.28	1.61	6.95	8.15	5.31	7.43	3.54	6.53	9.55	4.07
Merged-chr1-97386367-1	chr1	97386267	97386467	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258064.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	5.65	2.52	1.14	7.24	3.27	6.9	7.97	8.5	2.75	7.53	2.01	4.39
Merged-chr18-67201993-1	chr18	67201893	67202093	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-3366.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	8.48	5.79	2.85	0.8	0.82	2.51	4.65	4.77	3.34	4.02	3.52	11.59
Merged-chr2-25257769-1	chr2	25257669	25257869	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	2330.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	10.9	16.35	9.13	4.83	3.27	8.78	3.32	2.33	3.54	2.51	9.04	5.95
Merged-chr4-91376502-1	chr4	91376402	91376602	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357188)	promoter-TSS (NM_001357188)	-6.0	NM_001347149	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	2.02	2.01	5.13	9.65	7.36	5.96	10.3	10.09	0.59	0.0	5.02	3.13
Merged-chr10-37504745-1	chr10	37504645	37504845	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-365819.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.02	1.51	1.14	3.22	0.82	2.2	7.31	7.51	3.15	1.51	4.52	0.63
Merged-chr11-95870107-2	chr11	95869975	95870175	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008081, intron 7 of 10)	B4A|SINE|B4	11258.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	5.65	1.01	3.42	0.8	2.45	16.31	7.31	5.83	10.62	12.05	12.06	8.77
Merged-chr11-99177330-1	chr11	99177230	99177430	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22253.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	5.65	4.78	10.84	0.0	9.0	15.05	12.29	5.41	5.9	6.03	6.53	2.51
Merged-chr6-97531231-1	chr6	97531131	97531331	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-43411.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.42	3.52	5.7	8.85	4.5	6.27	3.32	6.2	3.54	3.51	8.54	3.45
Merged-chr6-97453392-1	chr6	97453292	97453492	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	5894.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	1.62	2.01	0.0	2.41	1.64	3.45	7.97	6.25	1.57	4.52	1.51	1.88
Merged-chr8-123045181-1	chr8	123045081	123045281	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_045268)	TTS (NR_045268)	2606.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	10.09	8.8	1.14	2.41	2.45	4.7	0.0	0.7	3.93	2.51	2.51	3.45
Merged-chr18-46174094-2	chr18	46173999	46174199	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178872, intron 7 of 9)	intron (NM_178872, intron 7 of 9)	24719.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.63	3.27	9.13	13.27	6.95	1.25	11.96	10.12	4.92	4.52	8.54	6.58
Merged-chr1-59475799-3	chr1	59475683	59475883	+	774.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6364.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	9.29	7.8	6.85	15.69	17.59	9.41	5.31	15.73	24.19	11.55	17.08	7.83
Merged-chr2-6717159-3	chr2	6717073	6717273	+	774.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4489.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.86	8.3	9.13	8.45	8.18	8.15	5.31	13.85	15.74	13.56	25.63	7.21
Merged-chr6-17508733-2	chr6	17508643	17508843	+	774.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	44786.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	17.77	7.55	2.28	8.45	4.5	10.98	8.3	8.78	1.77	0.0	0.0	2.51
Merged-chr13-80862451-2	chr13	80862370	80862570	+	774.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-20914.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	4.44	3.77	6.28	9.25	15.55	8.78	10.3	11.66	14.36	9.04	10.05	11.59
Merged-chr16-85138750-2	chr16	85138653	85138853	+	774.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34954.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.02	1.51	12.55	13.67	11.05	14.42	19.93	17.47	1.77	2.51	3.52	3.13
Merged-chr16-92397971-2	chr16	92397889	92398089	+	774.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	2089.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.83	5.03	1.14	2.01	8.18	15.37	11.29	9.76	8.26	8.03	8.54	5.33
Merged-chr9-55153093-3	chr9	55153007	55153207	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346658, intron 1 of 12)	intron (NM_001346658, intron 1 of 12)	3024.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	10.9	9.06	8.56	8.45	11.05	17.25	8.64	10.23	9.05	17.07	9.04	11.9
Merged-chr2-167659369-3	chr2	167659321	167659521	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	2123.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	4.85	5.53	4.56	8.85	11.05	6.59	3.65	7.09	8.06	5.52	2.01	8.77
Merged-chr9-120140844-3	chr9	120140749	120140949	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8893.0	NR_153960	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	10.5	6.04	2.28	10.86	10.64	15.37	3.65	6.31	12.19	16.07	17.08	13.78
Merged-chr2-18698796-3	chr2	18698711	18698911	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001334)	promoter-TSS (NM_001001334)	-211.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	9.69	11.82	7.42	10.05	8.59	8.47	5.31	10.46	11.01	8.03	8.04	8.46
Merged-chr7-139249531-3	chr7	139249455	139249655	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	1073.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.44	7.55	6.85	3.22	5.32	3.14	5.31	6.2	11.41	14.06	5.02	12.84
Merged-chr17-25867897-3	chr17	25867800	25868000	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026633, intron 2 of 4)	intron (NM_026633, intron 2 of 4)	838.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	14.54	3.52	12.55	4.42	12.27	7.21	7.31	8.24	12.39	10.54	13.57	11.9
Merged-chr7-143907471-4	chr7	143907329	143907529	+	774.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-25686.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	4.44	3.77	2.28	3.22	1.64	1.25	2.66	3.17	5.51	4.52	2.01	3.76
Merged-chr17-83654721-2	chr17	83654605	83654805	+	774.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22810.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	3.23	1.26	2.28	4.02	9.41	10.35	4.98	7.04	9.44	12.05	12.06	8.14
Merged-chr15-59795888-2	chr15	59795791	59795991	+	774.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045076)	promoter-TSS (NR_045076)	-932.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	1.62	1.01	7.42	6.03	11.86	8.47	16.61	13.46	8.26	4.02	9.55	10.96
Merged-chr6-135116683-2	chr6	135116575	135116775	+	774.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001205396, exon 2 of 4)	exon (NM_001205396, exon 2 of 4)	1608.0	NM_053118	93746.0	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	6.06	8.8	19.4	15.69	4.91	3.45	4.65	8.5	4.52	3.51	5.02	2.51
Merged-chr14-60988360-2	chr14	60988271	60988471	+	774.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49616.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.42	5.28	3.42	1.21	7.77	3.76	6.64	6.53	16.92	17.57	10.05	6.58
Merged-chr12-108206901-2	chr12	108206795	108206995	+	774.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159910, intron 5 of 5)	intron (NM_001159910, intron 5 of 5)	27157.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	14.13	9.06	2.85	9.25	11.45	5.33	17.27	6.45	8.26	6.53	7.03	2.82
Merged-chr14-52316114-3	chr14	52315968	52316168	+	774.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001244916, exon 1 of 2)	exon (NM_001244916, exon 1 of 2)	255.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	2.83	9.56	3.42	8.85	4.5	4.7	3.32	4.35	5.31	6.53	2.01	4.7
Merged-chr15-62210825-3	chr15	62210731	62210931	+	774.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	8620.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.06	7.55	9.13	17.7	6.55	7.84	3.99	12.0	17.31	9.04	14.07	13.16
Merged-chrX-101734162-3	chrX	101734064	101734264	+	774.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009910)	promoter-TSS (NM_009910)	-17.0	NM_009910	12766.0	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	5.65	2.77	9.13	12.07	7.77	8.78	8.97	15.48	13.37	13.56	10.05	6.89
Merged-chr7-98489942-3	chr7	98489838	98490038	+	774.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4284.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	9.69	15.09	6.28	5.23	15.96	8.78	14.28	17.52	18.49	12.55	17.59	8.77
Merged-chr11-86822979-3	chr11	86822906	86823106	+	774.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-15346.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	9.69	7.29	6.28	6.03	11.05	12.23	8.64	12.36	6.88	9.54	7.03	7.83
Merged-chr10-96738168-3	chr10	96738069	96738269	+	774.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	12.52	8.55	17.11	4.42	11.45	18.5	5.31	18.39	12.59	9.04	16.58	8.77
Merged-chr18-50056298-3	chr18	50056188	50056388	+	774.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-2626.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	9.29	5.53	5.13	2.01	9.41	17.25	5.98	7.29	15.54	25.61	27.13	11.59
Merged-chr2-31689254-3	chr2	31689150	31689350	+	774.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153862)	promoter-TSS (NR_153862)	713.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	16.15	6.79	12.55	14.48	1.64	10.66	11.29	7.51	11.41	6.53	9.55	9.4
Merged-chr12-105722864-2	chr12	105722812	105723012	+	774.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030187, intron 4 of 17)	intron (NM_030187, intron 4 of 17)	16930.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	3.63	6.04	1.14	1.61	3.68	4.08	2.66	6.5	11.21	9.04	5.02	1.88
Merged-chr1-191963502-2	chr1	191963387	191963587	+	774.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13883.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	11.71	8.8	3.42	4.83	11.05	12.86	5.98	8.8	6.69	0.0	3.01	3.13
Merged-chr3-84040691-2	chr3	84040604	84040804	+	774.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-543.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	5.65	10.06	4.56	10.86	11.86	6.27	10.3	8.19	13.57	14.56	12.56	7.21
Merged-chr3-122888720-2	chr3	122888599	122888799	+	774.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046036, intron 5 of 5)	intron (NR_046036, intron 5 of 5)	-6373.0	NM_007980	14079.0	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	6.06	7.04	5.13	7.24	6.55	5.96	10.3	10.99	4.52	7.03	13.06	12.53
Merged-chr4-139196713-3	chr4	139196588	139196788	+	774.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	2577.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.67	4.78	11.41	8.45	11.05	8.47	6.64	16.37	13.96	6.53	9.55	10.34
Merged-chr10-88799498-3	chr10	88799400	88799600	+	774.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175158, intron 19 of 61)	MTD|LTR|ERVL-MaLR	27314.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	8.48	9.81	8.56	8.85	15.14	11.29	11.29	18.22	9.83	11.55	26.63	7.52
Merged-chr10-75317068-3	chr10	75317008	75317208	+	774.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331095)	promoter-TSS (NM_001331095)	231.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	7.27	9.56	2.85	9.65	7.36	6.59	5.98	6.14	17.31	3.51	14.57	11.59
Merged-chr1-156009165-1	chr1	156009065	156009265	+	774.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 6 of 6)	intron (NM_144791, intron 6 of 6)	25652.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.0	1.51	2.28	0.0	0.82	0.94	1.0	1.63	11.41	14.06	18.59	5.64
Merged-chr8-88207462-1	chr8	88207362	88207562	+	774.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	L1MD2|LINE|L1	8249.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.81	3.27	1.14	1.61	4.5	1.88	5.31	3.31	2.16	0.5	5.53	3.45
Merged-chr5-62889519-1	chr5	62889419	62889619	+	774.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75696.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.62	0.0	11.41	1.61	9.0	5.02	13.62	8.05	11.41	9.54	3.01	5.33
Merged-chr18-49458435-3	chr18	49458341	49458541	+	774.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64848.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	1.21	3.02	12.55	14.48	6.55	10.35	19.27	26.47	8.65	9.54	16.08	3.13
Merged-chr13-95883060-2	chr13	95882980	95883180	+	774.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	8842.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.81	1.26	4.56	4.02	14.73	12.23	8.3	16.71	8.65	9.54	10.05	2.19
Merged-chr10-68721185-3	chr10	68721097	68721297	+	774.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.67	9.31	13.12	7.64	11.86	9.09	20.26	24.28	14.16	13.05	14.57	9.4
Merged-chr17-51398176-3	chr17	51398074	51398274	+	774.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	50095.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	8.48	8.3	10.27	13.27	9.41	10.66	5.31	18.73	14.95	7.53	25.63	9.4
Merged-chr4-125123440-3	chr4	125123353	125123553	+	774.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4428.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	11.31	16.6	6.85	2.01	12.27	21.32	5.65	4.6	9.83	10.04	11.56	4.39
Merged-chr16-15890736-3	chr16	15890606	15890806	+	774.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 18 of 18)	intron (NM_001355731, intron 18 of 18)	3420.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	9.29	8.05	17.11	22.12	11.05	4.39	7.97	14.47	8.46	11.55	11.56	11.28
Merged-chr2-163766435-3	chr2	163766335	163766535	+	774.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16196.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	8.88	14.34	17.11	8.45	23.73	20.38	21.26	35.92	2.56	9.04	10.55	2.82
Merged-chr12-54791245-2	chr12	54791143	54791343	+	774.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026998, intron 2 of 13)	RMER17D|LTR|ERVK	4419.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	8.48	9.81	9.13	6.03	11.05	9.72	9.97	11.3	4.92	4.02	4.52	8.14
Merged-chr7-16581856-3	chr7	16581757	16581957	+	774.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31967.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	6.86	12.07	9.13	14.08	11.05	15.05	13.29	14.72	8.06	6.53	17.08	9.4
Merged-chr13-95891151-3	chr13	95890993	95891193	+	774.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	829.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.27	7.29	4.56	9.65	10.64	7.21	10.96	8.3	12.59	18.08	5.53	11.9
Merged-chr10-96001125-3	chr10	96001024	96001224	+	774.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 9 of 28)	intron (NM_001001932, intron 9 of 28)	60461.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.04	2.01	10.27	11.26	9.82	20.38	13.29	17.52	14.75	8.54	32.66	7.83
Merged-chr17-33566396-3	chr17	33566316	33566516	+	774.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	10709.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.65	7.8	7.42	5.63	11.05	25.71	15.94	15.36	13.96	18.08	14.57	11.28
Merged-chr15-76232603-3	chr15	76232509	76232709	+	774.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163575)	TTS (NM_001163575)	-1231.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	15.34	7.29	9.7	9.65	15.96	15.99	12.29	9.28	11.41	16.57	8.54	6.89
Merged-chr11-79577941-3	chr11	79577844	79578044	+	774.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010897, intron 57 of 57)	intron (NM_010897, intron 57 of 57)	-13268.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	13.73	10.31	7.42	8.45	10.64	13.48	10.3	9.84	18.49	10.54	13.06	9.71
Merged-chr1-34482188-4	chr1	34482072	34482272	+	774.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16240.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	11.31	7.04	6.28	8.45	5.73	6.59	4.98	4.4	6.49	6.53	7.54	7.52
Merged-chr1-137900440-1	chr1	137900340	137900540	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66015.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	2.02	2.26	1.14	9.25	7.77	4.39	7.64	6.81	4.13	11.05	6.53	3.13
Merged-chr7-90362930-1	chr7	90362830	90363030	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-24051.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	6.46	0.75	9.13	9.65	6.14	10.35	6.64	6.06	2.36	0.0	2.51	3.13
Merged-chr16-43574195-2	chr16	43574102	43574302	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 7 of 10)	intron (NM_001285805, intron 7 of 10)	-66453.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	4.44	8.3	5.7	2.01	6.55	8.15	3.32	13.43	10.82	8.03	17.59	8.77
Merged-chr4-105242668-1	chr4	105242568	105242768	+	774.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	85321.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.86	3.02	5.7	4.83	0.82	0.63	0.0	0.36	13.57	4.52	15.07	7.52
Merged-chr9-65361716-1	chr9	65361616	65361816	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	656.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	4.04	1.01	2.28	6.03	7.77	4.08	2.33	6.79	5.31	2.01	2.51	3.76
Merged-chr1-14740210-2	chr1	14740114	14740314	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15752.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.63	3.52	7.42	4.83	7.36	6.9	0.66	7.82	5.51	6.53	14.07	9.08
Merged-chr7-107370621-1	chr7	107370521	107370721	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021889)	promoter-TSS (NM_021889)	-169.0	NM_021889	60510.0	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	4.04	3.02	2.28	2.82	3.68	7.21	7.64	6.93	0.59	0.0	0.5	0.63
Merged-chr1-34490332-3	chr1	34490217	34490417	+	774.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR48A|LTR|ERV1	-8095.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	10.09	11.82	9.13	13.67	4.5	10.98	6.64	4.15	16.92	16.57	13.57	4.7
Merged-chr19-57013550-1	chr19	57013450	57013650	+	774.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4975.0	NM_001177797	226250.0	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	13.33	12.07	7.99	4.02	0.82	13.17	7.31	3.45	3.54	0.5	6.53	6.27
Merged-chr7-139366734-1	chr7	139366634	139366834	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22375.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	1.62	3.52	2.28	4.02	3.68	4.7	5.98	7.49	4.13	2.51	6.53	4.7
Merged-chr5-20847154-1	chr5	20847054	20847254	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	34970.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.44	1.76	0.0	3.62	4.91	5.33	8.64	6.62	7.87	2.51	6.53	5.01
Merged-chr19-3376233-2	chr19	3376132	3376332	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 13 of 18)	Lx8|LINE|L1	-12625.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.04	5.53	1.14	3.22	3.68	7.84	8.3	6.08	6.29	5.02	14.07	11.28
Merged-chr9-44316613-3	chr9	44316520	44316720	+	774.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027909, exon 5 of 14)	exon (NM_027909, exon 5 of 14)	3662.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	12.11	6.79	9.13	12.47	16.36	16.93	4.65	11.36	10.03	9.04	23.11	8.77
Merged-chr9-90163511-1	chr9	90163411	90163611	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003911, intron 1 of 23)	CpG	533.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	8.88	5.79	9.13	2.41	5.73	0.94	3.99	6.11	6.1	1.0	4.02	3.76
Merged-chr19-14450033-1	chr19	14449933	14450133	+	774.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 19 of 19)	intron (NM_001302951, intron 19 of 19)	-11527.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	8.08	2.26	2.85	3.22	3.68	1.88	1.99	4.65	3.74	6.03	9.55	2.82
Merged-chr2-33871534-1	chr2	33871434	33871634	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16412.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	1.62	0.5	0.0	0.0	13.5	7.53	4.32	9.48	7.67	9.54	11.05	6.89
Merged-chr14-121903988-1	chr14	121903888	121904088	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	11786.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	2.83	2.01	2.85	5.23	3.68	3.76	7.97	3.36	5.31	5.52	0.5	5.95
Merged-chr7-98534651-3	chr7	98534603	98534803	+	774.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40481.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	17.36	16.1	3.99	7.24	5.32	23.83	7.64	5.66	29.5	11.55	18.59	7.83
Merged-chr8-90857090-3	chr8	90857012	90857212	+	774.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	28277.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.08	7.8	6.85	22.12	19.64	14.42	18.93	26.64	11.01	8.03	11.56	10.34
Merged-chr11-52003200-3	chr11	52003099	52003299	+	774.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1022.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	14.94	5.03	11.98	4.83	6.95	6.59	6.31	5.55	15.93	9.54	6.53	12.84
Merged-chr1-151002151-3	chr1	151002060	151002260	+	774.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-8725.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	11.71	9.31	13.69	14.88	5.32	6.59	10.3	8.24	8.65	11.55	5.02	12.22
Merged-chr9-90206699-3	chr9	90206598	90206798	+	774.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	43720.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	8.88	5.79	1.14	6.84	7.77	5.64	5.65	16.57	12.0	6.53	27.13	10.65
Merged-chr11-117882011-3	chr11	117881939	117882139	+	774.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8513.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	13.73	8.55	11.98	17.7	13.09	13.17	13.95	21.64	17.51	11.55	11.05	6.89
Merged-chr19-46707507-3	chr19	46707408	46707608	+	774.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020577)	promoter-TSS (NM_020577)	65.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	8.88	11.07	6.85	18.9	24.14	13.48	9.63	7.15	8.65	7.53	8.04	3.45
Merged-chr1-93011051-4	chr1	93010956	93011156	+	774.383301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159658, intron 2 of 2)	intron (NM_001159658, intron 2 of 2)	4722.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	5.25	4.28	4.56	6.44	10.64	7.84	15.28	9.42	12.78	8.54	22.11	8.14
Merged-chr11-79625067-3	chr11	79624988	79625188	+	774.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1925.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	4.85	8.05	7.42	4.83	15.55	8.78	4.98	10.23	24.0	11.05	20.1	17.23
Merged-chr15-33263865-2	chr15	33263780	33263980	+	774.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	142059.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	2.83	6.79	13.69	9.25	4.5	4.08	5.31	12.62	4.13	3.51	14.07	3.13
Merged-chr8-27085607-1	chr8	27085507	27085707	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054044)	promoter-TSS (NM_054044)	-234.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	1.62	5.53	7.42	0.0	6.55	2.82	2.66	5.1	1.18	6.03	6.03	1.57
Merged-chr1-51499023-1	chr1	51498923	51499123	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20624.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.25	3.77	1.14	6.84	3.27	9.41	7.31	6.87	5.11	3.01	5.53	4.07
Merged-chr4-129861549-1	chr4	129861449	129861649	+	774.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40841.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.21	1.01	0.0	0.0	0.0	0.0	0.66	0.0	22.42	11.05	13.57	14.1
Merged-chr1-34802434-1	chr1	34802334	34802534	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	712.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	3.77	10.27	0.0	9.0	3.14	4.65	8.61	6.69	1.51	11.56	1.25
Merged-chr6-129546077-1	chr6	129545977	129546177	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12793.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	6.06	6.04	7.42	5.23	8.18	5.33	5.65	10.01	0.79	0.0	0.5	0.63
Merged-chr19-56295229-1	chr19	56295129	56295329	+	774.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146101, intron 1 of 11)	intron (NM_146101, intron 1 of 11)	7317.0	NM_146101	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	9.29	12.07	5.13	13.27	5.73	5.64	0.66	5.27	5.11	3.51	3.01	5.01
Merged-chr10-88492873-3	chr10	88492767	88492967	+	774.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	11103.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	5.65	12.07	14.26	7.64	16.36	15.37	7.64	14.07	9.83	9.04	11.05	4.39
Merged-chr19-12518015-3	chr19	12517901	12518101	+	774.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16005.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	17.77	11.32	11.98	6.44	6.14	6.27	8.3	8.21	11.6	6.03	8.04	9.71
Merged-chr12-98280721-3	chr12	98280596	98280796	+	774.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12061.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	9.69	9.81	7.99	10.86	6.55	7.21	3.32	11.16	17.7	13.05	16.58	9.4
Merged-chr7-141345019-3	chr7	141344919	141345119	+	774.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133191, intron 4 of 20)	B1_Mur1|SINE|Alu	6017.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	10.9	22.13	30.8	8.04	11.45	18.19	2.99	2.97	37.96	32.13	19.6	18.17
Merged-chr4-101214280-3	chr4	101214156	101214356	+	774.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	51026.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	12.11	8.8	7.99	13.27	9.0	7.53	7.64	12.7	10.42	13.56	8.04	3.45
Merged-chr1-136344463-2	chr1	136344388	136344588	+	774.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	1616.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	7.27	9.81	8.56	3.62	7.36	4.7	3.99	8.92	6.69	5.52	2.01	4.39
Merged-chr15-4043279-2	chr15	4043169	4043369	+	774.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024188, intron 3 of 16)	GA-rich|Low_complexity|Low_complexity	-15863.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	7.27	4.02	2.28	5.63	6.95	5.33	6.31	13.32	9.05	10.04	8.04	4.7
Merged-chr12-86163118-2	chr12	86163011	86163211	+	774.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199843)	TTS (NM_001199843)	-6230.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	6.46	8.55	5.13	7.64	12.27	3.45	3.99	13.6	6.69	9.54	14.57	7.21
Merged-chr9-55544243-2	chr9	55544157	55544357	+	774.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027397, exon 4 of 6)	exon (NM_027397, exon 4 of 6)	3108.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	9.69	10.31	14.83	6.44	5.73	4.7	8.64	7.23	5.31	6.53	6.53	7.52
Merged-chr6-100850793-2	chr6	100850689	100850889	+	774.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182939, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	17151.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	3.23	2.01	6.85	4.42	1.64	12.23	6.31	7.4	18.69	11.55	13.06	9.4
Merged-chr4-102506793-3	chr4	102506694	102506894	+	774.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-63266.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	14.94	9.06	5.7	20.51	4.91	6.27	6.64	6.06	16.52	10.54	14.07	10.34
Merged-chr6-99252965-3	chr6	99252860	99253060	+	774.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	13555.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	8.48	7.55	14.83	5.63	9.0	7.21	9.3	11.13	12.0	9.54	17.08	12.53
Merged-chr6-54917769-3	chr6	54917679	54917879	+	774.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	53882.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.46	9.81	6.28	10.46	10.64	10.66	7.97	15.84	12.0	4.52	12.06	7.83
Merged-chr2-35462367-3	chr2	35462341	35462541	+	774.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	-992.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.85	10.56	9.7	5.23	4.5	5.64	9.97	10.88	8.06	9.04	5.02	5.01
Merged-chr14-40936599-3	chr14	40936494	40936694	+	774.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	11615.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	10.5	5.28	14.83	14.48	20.86	9.41	5.65	17.33	16.52	8.54	12.56	10.65
Merged-chr17-24708841-2	chr17	24708761	24708961	+	774.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1208.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	6.46	5.53	4.56	7.64	8.18	9.09	2.66	2.75	26.16	17.07	16.58	12.22
Merged-chr13-104152531-2	chr13	104152438	104152638	+	774.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25928.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	4.44	9.06	13.12	10.05	6.95	10.03	15.28	9.28	1.18	1.51	4.52	0.63
Merged-chr14-73390389-2	chr14	73390290	73390490	+	774.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-5101.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.85	6.54	4.56	4.42	6.95	6.9	8.64	8.3	11.01	7.03	12.06	7.52
Merged-chr11-64837975-3	chr11	64837878	64838078	+	774.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-141057.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	6.46	6.54	11.41	16.89	13.5	13.17	5.98	12.11	9.83	7.03	26.13	11.59
Merged-chr7-139296760-3	chr7	139296672	139296872	+	774.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48290.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	7.67	1.76	2.85	10.05	10.64	7.21	4.98	15.28	9.44	7.53	20.6	15.98
Merged-chr2-173586786-3	chr2	173586675	173586875	+	774.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027957, intron 13 of 14)	CpG	-8434.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	14.13	10.06	11.41	15.28	10.23	10.03	6.98	10.85	11.01	4.02	23.11	8.14
Merged-chr9-107579580-2	chr9	107579481	107579681	+	774.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008317, exon 4 of 4)	3' UTR (NM_008317, exon 4 of 4)	-1088.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	13.33	4.28	2.85	1.21	13.09	15.05	6.98	7.96	10.42	20.59	5.53	5.64
Merged-chr5-41842883-3	chr5	41842778	41842978	+	774.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	1437.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	8.48	9.56	11.41	9.25	6.55	7.84	5.31	12.59	17.31	7.53	11.05	10.65
Merged-chr16-25038701-3	chr16	25038615	25038815	+	774.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20924.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	13.33	7.04	9.13	11.26	13.09	8.47	5.65	19.54	12.19	11.55	16.58	10.34
Merged-chr5-147418563-3	chr5	147418471	147418671	+	774.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-49.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	23.02	9.81	15.4	7.24	15.55	17.56	11.63	16.01	8.06	11.55	13.57	9.4
Merged-chr16-94007341-2	chr16	94007242	94007442	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	1495.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	10.5	1.76	7.99	6.03	15.14	3.76	14.28	8.33	5.11	6.53	13.57	7.52
Merged-chr10-94917403-3	chr10	94917364	94917564	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	27114.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	2.83	6.54	7.42	14.48	6.95	5.02	4.32	8.47	10.03	4.52	10.05	7.52
Merged-chr9-14893608-1	chr9	14893508	14893708	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176807, intron 4 of 4)	MTEb|LTR|ERVL-MaLR	10343.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	1.62	1.51	5.7	4.83	2.05	6.27	8.97	14.36	5.51	8.03	9.04	6.27
Merged-chr12-84217108-1	chr12	84217008	84217208	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1773.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.08	2.01	2.28	4.02	8.59	5.96	7.31	8.19	7.08	5.52	8.04	2.51
Merged-chr8-119839278-1	chr8	119839178	119839378	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1301.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	10.5	8.3	10.27	7.64	7.77	10.03	2.66	7.35	22.03	12.05	22.61	10.34
Merged-chr1-37308217-3	chr1	37308139	37308339	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8401.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	14.13	9.06	22.25	17.29	2.86	4.39	0.0	6.22	11.21	12.05	10.05	3.76
Merged-chr13-109348288-1	chr13	109348188	109348388	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	23544.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.81	3.27	1.14	8.45	4.09	6.59	1.99	8.1	1.57	2.01	4.52	4.39
Merged-chr19-41760892-2	chr19	41760757	41760957	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13896.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	1.21	2.52	2.28	3.62	1.23	0.94	5.31	7.79	4.92	7.53	6.03	9.71
Merged-chr13-34199637-2	chr13	34199557	34199757	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	36693.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	6.46	7.29	5.13	5.23	3.27	1.88	3.32	5.69	36.58	32.64	49.24	19.74
Merged-chr2-77249872-1	chr2	77249772	77249972	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	30720.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.4	3.27	1.14	0.8	3.68	2.51	6.64	5.66	3.15	1.0	0.0	2.82
Merged-chr1-105781929-2	chr1	105781836	105782036	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	1213.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	7.67	6.79	11.41	8.45	3.68	4.08	6.31	9.06	6.69	2.01	5.02	2.51
Merged-chr18-63484902-2	chr18	63484792	63484992	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97709.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	5.65	5.79	4.56	8.85	10.23	4.7	5.98	13.6	4.13	5.52	10.55	7.21
Merged-chr8-25970107-1	chr8	25970007	25970207	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 4 of 17)	intron (NM_029884, intron 4 of 17)	6637.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.0	1.51	1.14	0.8	3.68	1.88	1.99	3.22	8.46	12.05	11.56	6.89
Merged-chr10-14391149-1	chr10	14391049	14391249	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153887.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.44	1.01	2.85	1.21	3.27	3.76	3.65	5.33	4.52	0.0	2.51	3.45
Merged-chr1-57393116-1	chr1	57393016	57393216	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13432.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	3.23	4.78	2.28	1.21	0.0	8.78	4.32	6.79	4.92	8.54	8.54	4.7
Merged-chr2-173218557-2	chr2	173218460	173218660	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139519, intron 1 of 3)	intron (NM_001139519, intron 1 of 3)	362.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.63	10.82	4.56	7.64	5.32	22.89	5.65	7.32	11.01	5.02	21.61	6.58
Merged-chr9-118873528-1	chr9	118873428	118873628	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-53008.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.21	1.51	1.71	0.8	0.41	3.45	2.33	2.8	1.57	4.52	0.5	1.88
Merged-chr17-44791555-1	chr17	44791455	44791655	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	14389.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	12.11	15.09	11.98	10.46	0.0	0.0	0.0	0.81	1.57	0.0	1.51	0.0
Merged-chr6-134538952-1	chr6	134538852	134539052	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27961.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	2.83	7.29	3.42	3.22	3.27	3.45	3.99	4.65	13.96	5.02	7.54	8.46
Merged-chr10-87840239-1	chr10	87840139	87840339	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18026.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	9.69	2.52	2.28	1.61	2.05	5.64	5.31	6.08	4.72	8.54	5.02	4.39
Merged-chr1-45819153-1	chr1	45819053	45819253	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028599, intron 16 of 20)	intron (NM_028599, intron 16 of 20)	23987.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.04	2.01	3.42	1.61	2.45	2.2	3.99	7.09	5.7	1.51	4.02	0.63
Merged-chr8-125462423-1	chr8	125462323	125462523	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	30410.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.02	0.5	1.14	0.8	1.64	3.14	0.33	1.79	10.82	7.03	16.08	3.45
Merged-chr16-31929099-1	chr16	31928999	31929199	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4752.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	11.71	6.29	5.7	3.22	4.91	9.72	3.99	6.59	15.34	8.03	10.05	4.7
Merged-chr14-52196818-2	chr14	52196711	52196911	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033618, intron 1 of 25)	CpG	428.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	13.73	6.79	5.7	13.67	2.45	10.98	6.64	9.11	3.74	9.04	13.06	1.88
Merged-chr18-23890462-1	chr18	23890362	23890562	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-64226.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.81	0.5	0.57	3.22	0.41	2.2	1.33	6.56	3.54	2.01	1.0	6.27
Merged-chr1-164081158-1	chr1	164081058	164081258	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011346)	TTS (NM_011346)	19082.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	1.62	2.26	3.42	7.24	2.86	2.2	2.66	8.61	6.1	1.51	20.6	10.34
Merged-chr2-22743037-1	chr2	22742937	22743137	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-31290.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.63	5.53	5.7	5.63	8.18	7.53	1.99	7.88	7.08	3.51	7.54	6.58
Merged-chr17-33917990-1	chr17	33917890	33918090	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	-1488.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	3.23	3.27	1.71	3.22	0.0	0.0	0.66	0.59	3.34	5.02	4.02	2.19
Merged-chr2-66192647-1	chr2	66192547	66192747	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	63970.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	4.44	9.31	6.28	8.04	5.73	8.15	2.66	8.36	5.9	11.55	6.03	3.13
Merged-chr9-77963016-1	chr9	77962916	77963116	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	45651.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.85	3.27	4.56	0.8	10.64	3.76	5.98	15.9	0.2	6.03	1.51	1.25
Merged-chr8-34908709-1	chr8	34908609	34908809	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	56981.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.81	2.52	15.97	3.62	5.73	4.39	6.31	10.96	5.11	5.02	5.02	6.89
Merged-chr11-76474649-2	chr11	76474552	76474752	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 3 of 21)	PB1|SINE|Alu	-6187.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	9.29	6.79	6.85	14.08	11.45	7.21	6.64	15.81	11.8	14.56	16.08	5.95
Merged-chr6-83069119-1	chr6	83069019	83069219	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009392, exon 2 of 3)	exon (NM_009392, exon 2 of 3)	1106.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	3.23	3.02	3.99	4.42	2.45	3.76	8.3	6.56	5.31	4.02	3.52	3.76
Merged-chr1-173419743-1	chr1	173419643	173419843	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-861.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.46	4.53	4.56	2.82	4.5	5.02	2.33	8.38	6.88	8.03	18.09	5.95
Merged-chr13-60627629-1	chr13	60627529	60627729	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	B4A|SINE|B4	25418.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.06	1.51	1.71	2.82	9.41	7.21	3.65	7.01	7.08	13.56	17.59	10.02
Merged-chr10-22357657-2	chr10	22357555	22357755	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4239.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	5.65	15.09	6.28	11.26	6.55	19.76	11.29	3.93	8.85	9.54	5.02	3.45
Merged-chr19-53422442-1	chr19	53422342	53422542	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31808.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	10.5	3.27	7.99	4.02	6.95	5.64	6.98	7.43	4.92	1.51	7.54	1.57
Merged-chr13-116986886-1	chr13	116986786	116986986	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	38630.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	14.54	11.82	8.56	10.05	0.82	0.0	0.66	1.09	10.03	4.52	1.51	2.19
Merged-chr6-114969905-2	chr6	114969808	114970008	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356371)	promoter-TSS (NM_001356371)	-705.0	NM_001356371	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	10.5	9.56	9.7	7.64	4.09	19.13	1.0	7.04	7.47	3.51	3.52	4.39
Merged-chr6-98959514-2	chr6	98959410	98959610	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 10 of 17)	intron (NM_001197321, intron 10 of 17)	68788.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.67	8.55	12.55	26.14	13.91	12.23	14.62	22.35	2.16	3.51	3.01	9.08
Merged-chr14-20661545-1	chr14	20661445	20661645	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3029.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	15.75	7.29	11.98	6.03	18.0	8.78	13.62	13.32	10.42	12.55	9.04	18.48
Merged-chr18-68801598-1	chr18	68801498	68801698	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62198.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	5.65	0.25	5.7	4.83	5.32	11.29	5.65	14.58	4.13	2.01	2.01	1.57
Merged-chr4-142065571-1	chr4	142065471	142065671	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	MIRc|SINE|MIR	-18727.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	2.02	4.02	6.28	0.8	4.91	3.14	8.64	6.5	8.26	7.03	2.51	1.88
Merged-chr4-40830214-1	chr4	40830114	40830314	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	19924.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	1.21	1.51	3.99	2.41	8.18	0.63	1.99	8.52	0.79	1.0	2.01	1.88
Merged-chr16-3920993-2	chr16	3920905	3921105	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029738, intron 6 of 11)	intron (NM_029738, intron 6 of 11)	11996.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.81	6.54	7.99	9.25	9.41	6.9	8.97	17.94	6.88	4.02	14.57	13.78
Merged-chr2-3475831-1	chr2	3475731	3475931	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-845.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	3.23	2.52	2.85	4.02	3.68	7.84	8.64	3.25	9.83	9.54	6.53	5.01
Merged-chr9-123799998-3	chr9	123799877	123800077	+	773.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110253, intron 15 of 17)	G-rich|Low_complexity|Low_complexity	-6500.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	5.25	7.04	10.84	10.46	8.59	10.35	12.29	12.93	6.49	13.05	14.57	13.47
Merged-chr2-118534103-2	chr2	118534000	118534200	+	773.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	10487.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.67	11.32	3.42	3.62	12.68	15.68	13.95	8.97	7.87	6.03	12.56	10.02
Merged-chr2-158864069-3	chr2	158863979	158864179	+	773.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69272.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	9.29	5.79	7.42	6.44	7.77	9.72	2.66	11.52	11.01	7.53	6.53	7.52
Merged-chr10-79927535-3	chr10	79927446	79927646	+	773.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288625, intron 1 of 8)	CpG	205.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	9.69	6.54	1.14	2.82	6.95	9.72	4.32	8.64	11.8	11.05	12.06	14.1
Merged-chr11-116732736-2	chr11	116732613	116732813	+	773.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19454.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	4.44	3.77	4.56	2.82	10.64	6.9	15.61	13.04	11.8	5.52	6.53	6.58
Merged-chr14-70800631-2	chr14	70800522	70800722	+	773.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26241.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.65	6.04	10.84	4.42	11.86	5.33	9.97	22.49	2.56	3.51	12.06	4.07
Merged-chr11-34030676-3	chr11	34030568	34030768	+	773.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MER57C2|LTR|ERV1	-16260.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	9.69	7.8	16.54	8.04	8.18	15.05	5.98	16.65	12.78	4.02	12.06	3.76
Merged-chr6-145792630-2	chr6	145792532	145792732	+	773.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15751.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	6.86	7.04	14.26	6.84	6.95	13.48	25.58	23.58	5.11	6.53	7.54	1.57
Merged-chr5-73255885-4	chr5	73255805	73256005	+	773.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028194, intron 1 of 62)	CpG	713.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	7.27	10.56	6.85	10.05	18.41	11.6	6.98	9.87	13.37	9.54	20.6	14.1
Merged-chr2-5417405-2	chr2	5417296	5417496	+	773.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	ID4_|SINE|ID	38006.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	11.31	4.02	12.55	5.63	13.91	7.53	4.65	7.65	4.13	2.01	11.56	4.7
Merged-chr2-27693281-2	chr2	27693185	27693385	+	773.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-16007.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	10.09	8.3	6.85	7.24	9.0	2.82	6.64	11.3	15.34	2.51	5.53	4.7
Merged-chr12-86772188-2	chr12	86772079	86772279	+	773.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37810.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	10.9	6.79	3.42	7.64	4.09	16.62	5.65	11.05	10.03	9.54	16.08	9.71
Merged-chr6-72155842-2	chr6	72155746	72155946	+	773.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-32649.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.42	8.3	2.28	7.64	4.09	11.92	8.3	10.12	4.33	5.02	11.05	6.89
Merged-chr13-51696679-1	chr13	51696579	51696779	+	773.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44971.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	4.44	5.28	3.99	12.07	9.41	11.92	7.97	10.43	8.06	8.03	4.52	5.95
Merged-chr11-101983066-3	chr11	101983001	101983201	+	773.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1690.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	7.27	12.07	6.85	4.02	12.27	8.47	5.98	5.64	14.16	11.05	17.08	8.46
Merged-chr7-144447286-3	chr7	144447183	144447383	+	773.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357116, intron 10 of 15)	intron (NM_001357116, intron 10 of 15)	23652.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	12.11	9.31	6.85	20.11	14.73	16.62	6.64	12.56	9.24	12.55	13.57	9.4
Merged-chr4-129365340-3	chr4	129365247	129365447	+	773.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028603, intron 2 of 4)	intron (NM_028603, intron 2 of 4)	12681.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	6.46	13.33	14.83	10.46	6.14	9.09	3.32	8.78	7.87	5.02	13.06	5.01
Merged-chr2-118491556-4	chr2	118491487	118491687	+	773.793762	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11891.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	4.44	3.52	5.13	3.22	4.09	2.2	14.28	5.24	3.93	14.06	5.02	5.64
Merged-chr17-67133825-3	chr17	67133734	67133934	+	773.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-107599.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	6.86	7.8	6.85	10.86	5.32	3.76	18.6	13.68	5.31	10.04	17.08	7.21
Merged-chrX-73593379-3	chrX	73593262	73593462	+	773.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46079.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	10.9	9.31	6.85	4.02	12.68	8.15	1.99	11.33	13.77	7.53	11.56	7.83
Merged-chr6-134172097-1	chr6	134171997	134172197	+	773.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	136397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.65	7.55	2.85	3.62	11.05	13.17	5.65	6.98	5.7	6.53	8.04	3.13
Merged-chr12-100568256-2	chr12	100568164	100568364	+	773.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 14 of 17)	intron (NM_153587, intron 14 of 17)	-47442.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.5	0.0	0.0	7.36	17.56	12.29	14.97	10.42	5.02	22.61	8.14
Merged-chr4-43041403-2	chr4	43041300	43041500	+	773.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-1099.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	12.92	9.81	6.85	3.22	12.68	11.92	6.31	7.71	17.31	7.03	9.55	2.51
Merged-chr4-117916600-2	chr4	117916494	117916694	+	773.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1595.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	15.34	5.79	5.7	12.87	0.0	0.31	0.66	1.96	11.8	8.03	13.57	4.07
Merged-chr5-101239527-2	chr5	101239440	101239640	+	773.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	393311.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.23	4.02	2.85	4.02	6.14	7.21	3.65	6.53	11.41	8.54	6.03	4.39
Merged-chr1-131481626-3	chr1	131481537	131481737	+	773.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	45724.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	16.56	9.81	20.54	10.46	10.64	15.05	13.95	9.7	12.19	11.55	9.04	5.95
Merged-chr6-65151955-3	chr6	65151846	65152046	+	773.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-7216.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	11.31	7.55	32.52	8.04	14.73	12.86	9.3	13.37	12.98	9.54	15.58	14.72
Merged-chr7-43446389-3	chr7	43446295	43446495	+	773.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	2323.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	12.52	8.55	15.4	10.86	7.77	13.48	7.31	14.86	14.55	14.06	17.59	9.71
Merged-chr12-17000886-1	chr12	17000786	17000986	+	773.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	-768.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	3.63	7.29	3.42	7.24	18.82	8.15	3.99	7.6	8.06	7.03	2.51	7.83
Merged-chr3-65774077-3	chr3	65773985	65774185	+	773.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166659, intron 7 of 12)	intron (NM_001166659, intron 7 of 12)	107857.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	8.08	5.79	7.99	8.85	8.18	5.33	2.33	7.54	14.16	7.53	16.08	2.51
Merged-chr12-85569700-1	chr12	85569600	85569800	+	773.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29405.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.27	4.02	2.85	2.82	4.91	5.33	11.63	8.24	6.29	5.02	3.01	6.27
Merged-chr11-87045637-2	chr11	87045541	87045741	+	773.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025638, intron 5 of 9)	intron (NM_025638, intron 5 of 9)	28496.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	11.31	6.04	5.7	5.23	13.91	13.48	9.63	29.58	12.59	10.04	18.09	2.19
Merged-chr11-64436136-2	chr11	64436034	64436234	+	773.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028445, exon 1 of 1)	non-coding (NR_028445, exon 1 of 1)	540.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.83	8.8	16.54	4.83	6.95	2.51	1.0	3.28	7.87	9.04	12.06	14.41
Merged-chr3-37414647-2	chr3	37414547	37414747	+	773.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153561, intron 2 of 4)	intron (NM_153561, intron 2 of 4)	4949.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0.81	2.77	5.7	5.23	5.32	6.9	6.98	7.04	12.78	6.53	12.56	2.82
Merged-chr5-137886166-3	chr5	137886074	137886274	+	773.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14416.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	8.48	12.07	4.56	9.25	10.23	9.41	4.98	8.78	16.13	15.57	11.05	7.83
Merged-chr3-22126571-3	chr3	22126455	22126655	+	773.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	49903.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	11.71	10.06	35.37	17.7	8.18	5.96	14.95	18.2	13.37	3.01	14.07	9.08
Merged-chr2-23172485-3	chr2	23172380	23172580	+	773.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013771, intron 5 of 18)	ID_B1|SINE|B4	15975.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	6.46	12.58	23.96	10.46	9.82	3.14	5.65	13.88	10.62	10.54	8.04	19.11
Merged-chr2-174471092-2	chr2	174471052	174471252	+	773.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025531, intron 1 of 5)	B1F1|SINE|Alu	1789.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	10.9	3.52	2.85	5.23	1.64	2.2	5.31	6.7	2.36	7.53	6.03	14.41
Merged-chr9-108284612-3	chr9	108284505	108284705	+	773.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5852.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	9.69	8.3	6.28	7.24	5.73	15.05	3.65	11.24	15.14	8.03	19.6	5.33
Merged-chr5-107988106-3	chr5	107988025	107988225	+	773.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	7.27	10.82	9.13	8.85	8.59	5.64	10.3	12.14	24.78	17.07	21.1	7.52
Merged-chr9-14381638-4	chr9	14381559	14381759	+	773.5625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028013)	promoter-TSS (NM_028013)	-417.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.81	3.77	9.7	7.24	7.77	5.33	11.96	11.64	6.29	10.54	3.52	4.7
Merged-chr2-51089915-3	chr2	51089820	51090020	+	773.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59191.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	12.92	9.31	7.99	8.04	15.55	5.33	6.31	13.96	5.11	10.54	11.05	11.28
Merged-chrX-167145927-3	chrX	167145800	167146000	+	773.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63318.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	3.63	7.29	7.99	12.07	12.68	9.72	11.63	14.02	8.65	7.03	10.55	6.89
Merged-chr2-181189113-1	chr2	181189013	181189213	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151465)	TTS (NR_151465)	1866.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	3.23	4.53	12.55	5.23	4.91	3.14	8.97	9.62	2.56	4.52	6.53	5.33
Merged-chr12-25100298-2	chr12	25100218	25100418	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4226.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.88	11.82	2.28	9.65	6.95	3.45	12.95	3.79	10.03	8.03	11.56	8.77
Merged-chr9-80723855-2	chr9	80723760	80723960	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258422.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	6.46	2.77	15.4	9.65	20.86	10.66	19.27	41.44	0.79	0.0	0.0	0.31
Merged-chr3-146779094-2	chr3	146778992	146779192	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	2324.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	6.86	8.05	10.84	15.28	9.0	4.39	13.62	8.21	5.7	8.54	6.03	0.94
Merged-chr11-46780018-1	chr11	46779918	46780118	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_134248)	TTS (NM_134248)	28850.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	6.86	4.02	2.28	6.84	7.36	9.09	8.64	8.02	6.29	6.53	14.57	1.25
Merged-chr13-42829682-2	chr13	42829615	42829815	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-36532.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.4	5.03	6.85	4.83	4.91	5.96	6.98	2.33	9.83	7.53	8.04	5.64
Merged-chr8-123005228-2	chr8	123005121	123005321	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	37063.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.04	6.04	13.69	10.46	10.23	2.51	0.66	7.23	9.83	8.54	5.53	5.01
Merged-chr11-3504814-1	chr11	3504714	3504914	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172439)	promoter-TSS (NM_172439)	7.0	NM_172439	170835.0	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	2.02	6.79	1.14	3.62	6.95	5.64	1.66	7.85	0.59	1.0	2.51	1.57
Merged-chr3-152261453-2	chr3	152261362	152261562	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	4333.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	5.65	4.28	14.83	6.84	6.95	5.33	3.65	9.87	9.64	6.53	3.01	6.89
Merged-chr11-94277155-3	chr11	94277044	94277244	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34565.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	11.71	8.8	16.54	8.85	9.0	7.84	8.3	10.01	10.23	12.55	4.02	6.89
Merged-chr8-108748409-2	chr8	108748310	108748510	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	33766.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	11.71	8.3	12.55	23.73	11.45	7.84	11.29	13.93	9.24	6.53	7.54	6.89
Merged-chr2-52457386-2	chr2	52457285	52457485	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-32511.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	6.86	7.55	4.56	8.45	3.27	1.88	5.98	3.84	8.06	3.01	12.06	4.7
Merged-chr9-45608271-1	chr9	45608171	45608371	+	773.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-177039.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	3.23	0.75	3.42	5.23	0.82	0.63	0.66	0.79	13.57	4.52	16.58	6.27
Merged-chr11-99465027-3	chr11	99464931	99465131	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26878.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	18.17	13.33	4.56	11.26	17.59	6.9	1.33	9.81	11.6	14.06	11.05	2.19
Merged-chrX-157483066-2	chrX	157482960	157483160	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009214, intron 1 of 10)	intron (NM_009214, intron 1 of 10)	8308.0	NM_001359185	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	8.48	6.79	7.42	5.63	7.36	11.92	4.65	13.6	5.51	6.53	11.05	5.01
Merged-chr1-77213770-2	chr1	77213637	77213837	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	283031.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	6.46	8.55	12.55	8.04	4.91	6.27	6.98	9.03	5.51	8.03	5.53	6.27
Merged-chr13-17838664-1	chr13	17838564	17838764	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33567.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	4.04	3.02	5.13	3.22	11.45	5.33	0.66	11.41	5.7	5.52	9.04	2.82
Merged-chr7-113759398-3	chr7	113759300	113759500	+	773.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6598.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	7.27	17.86	6.28	12.47	7.77	8.47	2.66	7.63	15.54	9.54	4.52	4.7
Merged-chr15-79380656-3	chr15	79380538	79380738	+	773.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	-5338.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	13.73	2.01	3.42	8.04	11.86	7.53	1.0	7.37	17.51	22.09	15.07	12.84
Merged-chr3-67374092-2	chr3	67373983	67374183	+	773.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039543)	promoter-TSS (NM_001039543)	-14.0	NM_001039543	17349.0	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	6.06	3.77	6.28	8.45	13.91	22.89	13.62	29.64	8.85	23.6	10.55	5.64
Merged-chr16-33830131-2	chr16	33830031	33830231	+	773.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	CpG	466.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	6.46	6.29	3.99	8.45	13.91	6.59	7.64	9.62	9.83	11.55	17.08	5.64
Merged-chr3-89764463-3	chr3	89764346	89764546	+	773.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009602, exon 1 of 6)	5' UTR (NM_009602, exon 1 of 6)	186.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	7.27	7.55	12.55	4.42	10.64	19.13	3.32	9.79	15.14	11.55	18.59	9.08
Merged-chr13-36314450-3	chr13	36314362	36314562	+	773.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	196819.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	11.31	4.02	6.85	9.65	12.27	18.81	10.96	15.56	21.24	21.59	17.08	5.33
Merged-chr2-35232153-3	chr2	35232045	35232245	+	773.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24214.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	10.09	7.55	18.25	11.66	11.45	3.76	8.64	10.82	9.64	3.51	9.55	5.64
Merged-chr9-121309425-2	chr9	121309324	121309524	+	773.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	11922.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	1.62	7.04	4.56	2.82	13.5	3.14	2.33	8.33	8.85	14.06	15.07	6.58
Merged-chr2-125696461-2	chr2	125696343	125696543	+	773.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 1 of 11)	intron (NM_199022, intron 1 of 11)	23343.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	10.5	5.79	11.41	11.26	22.09	6.27	8.64	16.91	3.93	5.02	16.08	5.95
Merged-chr8-70627079-1	chr8	70626979	70627179	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	5016.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.27	1.76	3.99	2.41	4.91	4.7	1.99	3.84	1.97	3.01	0.5	1.88
Merged-chr14-54406753-1	chr14	54406653	54406853	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2719.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.81	1.01	1.71	6.44	6.55	8.15	5.31	8.94	4.72	0.5	4.02	3.13
Merged-chr18-78014843-3	chr18	78014755	78014955	+	773.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195633, exon 32 of 44)	exon (NM_001195633, exon 32 of 44)	42413.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	12.11	9.06	13.69	8.45	7.77	13.48	6.98	11.86	12.19	10.04	17.08	9.08
Merged-chr17-46637322-3	chr17	46637211	46637411	+	773.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357130, intron 6 of 15)	intron (NM_001357130, intron 6 of 15)	-7807.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	5.65	9.81	15.97	5.63	13.09	10.98	3.99	10.6	8.06	6.53	11.05	8.77
Merged-chr15-72837946-1	chr15	72837846	72838046	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27622.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.65	4.02	1.14	1.61	11.45	9.09	3.65	6.14	7.28	8.03	8.04	7.83
Merged-chr2-53013393-1	chr2	53013293	53013493	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	155525.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.81	1.01	3.42	2.41	2.86	7.53	6.98	6.93	6.1	4.02	7.03	2.82
Merged-chr18-56479626-1	chr18	56479526	56479726	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360917, intron 5 of 13)	intron (NM_001360917, intron 5 of 13)	47494.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.42	6.04	6.28	8.45	8.59	8.47	3.32	11.02	6.69	5.52	5.53	6.27
Merged-chr2-103567045-3	chr2	103566937	103567137	+	773.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178890, exon 1 of 17)	exon (NM_178890, exon 1 of 17)	727.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	13.33	8.55	6.85	14.08	11.86	7.84	8.97	7.26	11.01	11.05	9.55	14.72
Merged-chr5-67607866-3	chr5	67607745	67607945	+	773.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-38.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	9.29	6.04	1.71	19.71	8.59	6.27	11.29	10.96	8.26	11.05	15.58	12.53
Merged-chrX-12123787-3	chrX	12123693	12123893	+	773.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	36553.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	15.75	14.34	13.69	15.28	4.91	17.25	9.3	18.17	8.65	14.56	12.56	6.89
Merged-chr18-75262674-6	chr18	75262606	75262806	+	773.272217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	34611.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.85	4.78	5.7	6.03	3.27	3.76	1.33	2.94	3.74	8.03	5.53	3.45
Merged-chr7-100430142-3	chr7	100430038	100430238	+	773.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001017985, exon 21 of 33)	exon (NM_001017985, exon 21 of 33)	-42853.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	16.15	7.04	9.7	8.45	13.09	13.17	22.26	22.71	8.85	16.57	21.1	9.4
Merged-chr5-72235207-1	chr5	72235107	72235307	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	31864.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.23	1.51	10.27	1.21	6.14	7.53	7.64	11.78	8.65	0.0	3.52	2.82
Merged-chr7-28780281-2	chr7	28780190	28780390	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022432, intron 8 of 15)	intron (NM_022432, intron 8 of 15)	1224.0	NR_040339	100503790.0	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	8.88	6.04	2.28	7.64	13.91	13.17	9.63	9.36	5.7	6.53	5.02	4.39
Merged-chr2-35728795-2	chr2	35728695	35728895	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	32063.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.04	6.54	12.55	8.04	2.45	5.64	4.32	11.94	7.28	4.02	10.05	2.51
Merged-chr4-150220800-2	chr4	150220712	150220912	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16385.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	4.44	3.02	1.14	3.22	10.23	10.66	10.3	13.74	9.44	4.52	11.56	6.89
Merged-chr9-102717644-3	chr9	102717531	102717731	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-173.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	19.79	9.56	7.42	4.83	7.77	11.29	6.64	17.69	13.18	9.04	12.56	5.64
Merged-chr4-11628207-2	chr4	11628094	11628294	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48532.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	6.86	3.02	4.56	3.62	4.5	5.02	4.98	6.81	11.21	6.53	12.56	2.82
Merged-chr4-6192192-2	chr4	6192098	6192298	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026534, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1093.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	2.83	0.25	1.14	2.01	5.32	2.82	6.31	6.7	8.65	8.03	13.06	3.13
Merged-chr15-78582102-3	chr15	78582012	78582212	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-523.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	11.31	8.3	10.27	4.83	9.0	8.47	5.31	8.16	17.51	7.53	13.06	17.23
Merged-chr10-60269857-2	chr10	60269774	60269974	+	773.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7754.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.23	4.02	11.98	2.41	12.68	12.86	8.3	13.49	12.39	12.05	12.56	6.58
Merged-chr7-110236333-3	chr7	110236232	110236432	+	773.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	14629.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	12.52	8.55	10.27	8.85	11.86	11.6	11.96	21.81	10.62	7.53	13.57	5.64
Merged-chr2-59387368-3	chr2	59387275	59387475	+	773.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040510)	promoter-TSS (NR_040510)	-693.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.86	10.31	22.25	11.26	17.18	6.59	14.95	5.92	27.34	8.54	18.59	9.08
Merged-chr17-70847261-3	chr17	70847168	70847368	+	773.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164077)	promoter-TSS (NM_001164077)	-491.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	16.15	8.05	6.85	11.26	11.45	10.66	8.64	6.14	28.72	8.03	24.62	13.16
Merged-chr6-38636937-5	chr6	38636826	38637026	+	773.209534	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033171, exon 1 of 5)	exon (NM_001033171, exon 1 of 5)	313.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	7.27	6.04	7.99	5.63	6.95	5.96	7.64	8.92	6.49	8.54	17.08	6.58
Merged-chr2-25628421-2	chr2	25628322	25628522	+	773.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-448.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	10.9	8.55	7.99	10.46	6.14	10.66	1.0	3.59	12.19	13.05	7.54	9.08
Merged-chr3-65949642-2	chr3	65949533	65949733	+	773.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	8616.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	10.9	3.02	2.28	4.02	18.82	10.03	4.32	16.09	6.49	16.07	5.53	9.08
Merged-chr11-82820937-3	chr11	82820865	82821065	+	773.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007465, intron 1 of 6)	intron (NM_001007465, intron 1 of 6)	8078.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	8.08	8.55	9.7	10.05	15.96	18.5	21.26	26.58	11.6	10.54	13.57	5.64
Merged-chr13-75943633-3	chr13	75943457	75943657	+	773.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028493, exon 1 of 12)	5' UTR (NM_028493, exon 1 of 12)	267.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	3.23	7.8	5.13	4.42	2.86	8.47	3.99	5.64	6.29	9.54	11.05	8.14
Merged-chr5-65092140-3	chr5	65092054	65092254	+	773.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15414.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	14.94	9.31	15.97	10.46	14.73	8.15	10.63	7.26	19.28	14.06	8.04	8.46
Merged-chr15-82152169-2	chr15	82152068	82152268	+	773.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4899.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	6.46	6.04	4.56	4.42	9.82	7.21	4.32	7.01	14.75	13.56	11.05	12.53
Merged-chr6-48829830-3	chr6	48829708	48829908	+	773.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11180.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	12.92	7.55	9.7	4.83	16.36	15.99	8.97	6.28	11.41	9.54	16.08	4.39
Merged-chrX-167264244-3	chrX	167264127	167264327	+	773.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001313761, exon 1 of 3)	5' UTR (NM_001313761, exon 1 of 3)	102.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	9.69	6.79	6.85	12.07	16.36	9.41	11.96	11.61	10.42	7.03	16.08	8.77
Merged-chr2-20961485-2	chr2	20961385	20961585	+	773.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	6236.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	1.62	0.5	0.0	0.8	14.73	10.98	3.99	9.0	10.23	12.05	10.55	1.57
Merged-chr11-55005168-3	chr11	55005085	55005285	+	773.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001110211, exon 9 of 25)	exon (NM_001110211, exon 9 of 25)	28286.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	10.09	3.77	13.69	11.26	14.73	12.54	2.66	11.02	16.52	11.55	9.04	7.52
Merged-chr7-30592595-3	chr7	30592486	30592686	+	773.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021397, intron 1 of 5)	intron (NM_021397, intron 1 of 5)	356.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	7.67	8.8	10.27	6.44	5.32	8.47	12.29	10.74	14.75	13.56	13.06	11.28
Merged-chr6-114400582-3	chr6	114400485	114400685	+	773.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	2499.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	10.5	7.29	9.7	20.11	18.82	28.22	13.62	32.1	8.85	8.03	9.55	4.7
Merged-chr4-63559563-3	chr4	63559506	63559706	+	773.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	-621.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	3.23	6.54	3.42	8.04	4.09	4.08	4.65	5.24	4.13	5.02	7.54	9.4
Merged-chr9-78671653-3	chr9	78671549	78671749	+	773.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153098, intron 15 of 32)	intron (NM_153098, intron 15 of 32)	56103.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	16.15	14.09	15.4	10.46	1.64	8.47	6.31	7.51	9.44	10.54	29.14	5.01
Merged-chr2-124651287-3	chr2	124651184	124651384	+	773.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-2297.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	12.92	8.55	12.55	12.87	19.23	7.53	13.29	13.01	16.52	3.01	10.55	7.83
Merged-chr1-56524896-1	chr1	56524796	56524996	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112555.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	2.02	0.5	0.0	1.61	9.0	2.51	6.31	8.64	0.98	1.51	1.0	3.13
Merged-chr10-77397143-1	chr10	77397043	77397243	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	21130.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	2.42	0.0	0.0	0.8	1.23	0.94	5.98	5.05	1.77	4.52	1.51	0.63
Merged-chr5-5409890-2	chr5	5409806	5410006	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	-29655.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.04	4.28	12.55	14.48	1.64	9.09	3.65	9.2	11.21	8.03	12.06	4.07
Merged-chr10-39957972-1	chr10	39957872	39958072	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001113388)	TTS (NM_001113388)	2181.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.0	3.02	5.7	2.41	2.05	10.03	1.66	5.72	6.49	7.53	4.02	5.64
Merged-chr18-61113369-2	chr18	61113273	61113473	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4095.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	6.06	6.79	11.98	8.45	13.91	7.21	7.97	13.26	10.42	11.05	12.06	2.19
Merged-chr8-22974858-1	chr8	22974758	22974958	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001277280)	promoter-TSS (NM_001277280)	22.0	NM_001277280	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.81	0.75	0.57	0.8	0.82	2.82	0.33	0.17	1.97	3.01	1.51	0.63
Merged-chr6-82881945-1	chr6	82881845	82882045	+	773.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040520)	promoter-TSS (NR_040520)	-92.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	2.42	3.02	5.13	8.85	8.59	5.33	0.33	4.35	12.0	13.05	13.57	1.57
Merged-chr6-115993952-2	chr6	115993791	115993991	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	1114.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.63	5.03	5.7	3.62	7.77	4.08	5.98	4.88	5.31	1.51	4.02	5.01
Merged-chr15-65737474-1	chr15	65737374	65737574	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49546.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.0	0.0	0.0	0.0	7.36	3.76	2.99	8.36	0.0	1.0	0.0	0.0
Merged-chr15-74932644-1	chr15	74932544	74932744	+	773.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6-int|LTR|ERV1	-22407.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.81	0.25	0.0	0.0	0.0	0.31	0.0	0.93	8.06	4.02	3.52	3.45
Merged-chr6-42325420-2	chr6	42325309	42325509	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	-769.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	5.25	4.02	5.7	0.8	11.86	5.64	2.33	9.79	10.62	10.04	9.55	6.27
Merged-chr8-120812236-1	chr8	120812136	120812336	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73597.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	8.88	2.52	4.56	2.82	6.14	5.96	8.64	10.51	4.92	4.02	14.07	3.45
Merged-chr12-24595513-1	chr12	24595413	24595613	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	MTC|LTR|ERVL-MaLR	14794.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	6.86	1.01	1.14	1.61	4.09	11.6	2.99	5.8	3.34	10.04	5.53	2.19
Merged-chr14-74904593-1	chr14	74904493	74904693	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	C-rich|Low_complexity|Low_complexity	43284.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.85	3.77	6.28	1.61	5.32	3.45	7.97	5.94	11.01	2.51	8.54	4.7
Merged-chr9-99110448-1	chr9	99110348	99110548	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	29763.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	1.62	1.01	1.14	4.02	2.45	3.76	7.31	5.19	3.15	3.01	2.51	1.88
Merged-chr8-14851463-3	chr8	14851374	14851574	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37062.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	9.69	7.04	13.69	10.05	11.05	12.23	11.63	17.3	25.77	8.54	13.06	6.58
Merged-chr10-25286495-1	chr10	25286395	25286595	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 2 of 7)	ID_B1|SINE|B4	12668.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.62	0.75	2.85	1.61	6.55	2.82	4.65	13.4	6.88	4.02	7.54	3.13
Merged-chr13-90841197-1	chr13	90841097	90841297	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64158.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	4.44	3.02	1.71	9.65	6.55	5.64	6.64	6.81	5.7	3.51	4.52	5.01
Merged-chr9-94665120-1	chr9	94665020	94665220	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4772.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.65	8.8	17.11	14.08	11.86	7.21	6.64	5.58	14.75	14.56	13.57	5.95
Merged-chr3-151771264-1	chr3	151771164	151771364	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8373.0	NM_031367	15061.0	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	12.11	5.28	4.56	6.44	5.32	5.96	6.64	10.26	0.0	1.0	0.0	0.0
Merged-chr8-80020630-2	chr8	80020529	80020729	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	37379.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	14.13	6.04	12.55	6.03	0.82	2.51	3.65	1.09	11.01	8.03	18.59	1.57
Merged-chr2-150666040-1	chr2	150665940	150666140	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1454.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	6.46	3.27	3.99	8.85	9.82	7.21	10.3	19.29	3.34	1.0	6.03	5.33
Merged-chr7-101947348-3	chr7	101947242	101947442	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-13485.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	7.27	6.79	12.55	4.83	9.0	2.82	3.32	8.21	17.31	5.52	12.56	5.33
Merged-chr11-11777366-1	chr11	11777266	11777466	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31596.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.86	3.77	1.14	9.65	8.18	13.17	10.3	9.48	9.44	8.03	13.06	6.27
Merged-chr4-156077736-2	chr4	156077635	156077835	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17933.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	4.04	4.02	1.14	5.23	9.0	1.57	3.65	4.82	4.13	4.52	7.03	9.08
Merged-chr7-101066738-2	chr7	101066608	101066808	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42067.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.04	5.03	0.0	1.61	8.18	5.33	1.99	2.13	58.81	41.17	54.77	44.8
Merged-chr2-166675618-1	chr2	166675518	166675718	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	38214.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.44	4.78	2.85	4.42	6.14	3.76	7.97	9.98	5.31	8.03	3.01	5.95
Merged-chr3-9499616-1	chr3	9499516	9499716	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 2 of 8)	L1MC5a|LINE|L1	96538.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.4	2.52	1.14	2.41	6.55	2.2	4.98	8.16	5.51	6.03	3.52	3.13
Merged-chr9-25401096-1	chr9	25400996	25401196	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR26|LTR|ERVK	-80501.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.63	3.27	2.85	4.83	4.5	0.94	5.65	7.32	3.74	0.5	9.04	5.33
Merged-chr5-88496580-1	chr5	88496480	88496680	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017468, intron 8 of 9)	L1M2|LINE|L1	8605.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	4.04	0.75	4.56	0.0	2.86	7.84	3.65	9.22	3.54	6.03	16.08	2.19
Merged-chr10-14054451-1	chr10	14054351	14054551	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88072.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.67	4.53	9.7	4.02	9.0	12.54	5.31	7.23	7.08	3.01	6.03	5.33
Merged-chr1-143919031-2	chr1	143918935	143919135	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85114.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	35.53	14.84	24.53	19.71	5.73	1.57	5.98	8.66	5.11	3.51	5.02	7.83
Merged-chr7-139281219-1	chr7	139281119	139281319	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32737.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.4	2.77	0.0	0.0	7.77	0.94	4.65	8.3	5.11	3.51	7.03	7.52
Merged-chr11-118459758-1	chr11	118459658	118459858	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER73|LTR|ERVL	-4763.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	14.54	7.55	15.4	11.66	24.14	19.13	13.95	19.35	23.6	11.05	22.61	22.87
Merged-chr10-41580069-1	chr10	41579969	41580169	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358562, intron 35 of 47)	intron (NM_001358562, intron 35 of 47)	12053.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	6.86	2.77	4.56	2.82	5.32	9.72	4.65	7.46	8.85	0.5	16.08	4.07
Merged-chr16-36706692-1	chr16	36706592	36706792	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	12714.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	11.31	4.78	5.7	1.21	4.09	10.66	9.3	2.69	2.16	3.01	3.52	3.13
Merged-chr2-90533211-1	chr2	90533111	90533311	+	773.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	47436.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.42	1.51	0.57	0.0	0.41	1.88	2.66	1.74	11.41	13.56	8.54	5.01
Merged-chr16-91695358-2	chr16	91695267	91695467	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 7 of 11)	intron (NM_026994, intron 7 of 11)	6469.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	6.86	6.79	9.13	0.0	12.27	11.29	4.65	2.97	10.82	11.55	9.04	3.13
Merged-chr18-69563265-1	chr18	69563165	69563365	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	217105.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.81	1.51	0.0	0.0	1.64	6.9	5.31	7.74	2.95	0.0	4.02	0.31
Merged-chr14-32787663-1	chr14	32787563	32787763	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163616, intron 1 of 4)	MIRc|SINE|MIR	1700.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	7.67	2.01	4.56	4.83	11.05	1.88	4.65	7.6	5.7	2.51	3.01	2.51
Merged-chr2-9927049-3	chr2	9926849	9927049	+	772.974609	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20800.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	5.25	1.51	2.28	0.8	1.64	7.84	5.31	5.41	5.11	1.51	8.04	3.45
Merged-chr11-16950137-3	chr11	16950047	16950247	+	772.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110421, intron 2 of 5)	MTD|LTR|ERVL-MaLR	1135.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	10.09	11.57	9.7	3.62	11.45	9.09	7.64	17.41	11.8	13.56	12.06	8.14
Merged-chr2-145754142-3	chr2	145754048	145754248	+	772.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033220)	TTS (NR_033220)	-31968.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	9.29	5.53	11.41	9.25	12.27	12.54	21.26	14.3	11.21	17.07	16.58	7.83
Merged-chr6-125410680-3	chr6	125410546	125410746	+	772.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30142.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	9.69	7.8	6.28	6.84	18.41	5.64	8.97	10.63	10.62	10.04	8.54	4.7
Merged-chr6-72428202-3	chr6	72428103	72428303	+	772.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019802, intron 10 of 14)	intron (NM_019802, intron 10 of 14)	-10480.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	8.08	9.06	1.71	0.8	5.73	12.54	5.31	6.39	14.95	8.54	5.02	5.01
Merged-chr6-59214062-2	chr6	59213995	59214195	+	772.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5225.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	4.44	6.29	2.85	4.02	11.45	11.6	10.3	9.67	5.31	11.05	5.02	5.01
Merged-chr1-164184710-2	chr1	164184613	164184813	+	772.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007976, intron 9 of 24)	intron (NM_007976, intron 9 of 24)	-32496.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	2.02	9.06	6.85	4.83	11.05	7.84	8.64	10.85	12.78	8.03	11.05	2.82
Merged-chr17-65737798-3	chr17	65737688	65737888	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	34964.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	9.69	3.27	15.97	4.02	11.45	17.56	17.61	19.99	17.31	20.08	12.56	6.58
Merged-chr13-59675788-3	chr13	59675648	59675848	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027307)	promoter-TSS (NM_027307)	36.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	14.94	9.31	0.0	12.47	4.09	7.84	7.97	6.53	6.29	7.03	11.56	7.21
Merged-chr7-143036632-3	chr7	143036548	143036748	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 4 of 4)	Lx3_Mus|LINE|L1	-16102.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	11.71	9.31	5.7	7.24	9.41	8.47	5.98	2.44	14.36	16.57	19.09	5.64
Merged-chr12-71968780-3	chr12	71968699	71968899	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 17 of 25)	intron (NM_026102, intron 17 of 25)	79256.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.04	9.31	3.42	8.04	6.95	11.29	5.65	6.14	32.06	31.13	49.75	20.99
Merged-chr16-94713914-3	chr16	94713796	94713996	+	772.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102477.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.67	5.28	10.27	7.64	12.27	19.13	12.29	8.44	6.69	9.04	13.57	8.77
Merged-chr17-81064491-2	chr17	81064403	81064603	+	772.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028138, intron 1 of 9)	intron (NM_028138, intron 1 of 9)	582.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	4.44	6.04	6.85	4.42	12.27	9.72	10.3	8.66	14.16	10.04	10.55	5.95
Merged-chr6-117271743-3	chr6	117271627	117271827	+	772.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103192.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	10.5	3.27	9.13	9.65	9.82	7.21	15.61	16.4	8.85	3.51	11.05	12.22
Merged-chr12-103437840-3	chr12	103437729	103437929	+	772.8555299999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194067, intron 4 of 5)	intron (NM_194067, intron 4 of 5)	3640.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	14.54	9.31	11.41	10.86	17.18	16.62	5.98	22.12	7.47	11.05	12.06	8.77
Merged-chr8-68208043-3	chr8	68207944	68208144	+	772.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-68484.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	14.54	7.55	19.4	9.65	11.45	4.39	3.99	8.44	9.44	10.04	18.09	4.39
Merged-chr14-57611901-2	chr14	57611802	57612002	+	772.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020506, intron 9 of 22)	intron (NM_020506, intron 9 of 22)	40288.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	12.92	8.3	14.26	4.83	1.64	2.51	0.66	3.0	12.98	7.53	13.57	12.53
Merged-chr14-103826119-2	chr14	103826021	103826221	+	772.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17580.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	8.08	3.77	9.13	6.44	10.64	8.15	10.3	11.55	12.39	6.03	23.11	6.27
Merged-chr5-38040007-2	chr5	38039907	38040107	+	772.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	777.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	7.67	5.03	1.71	2.41	10.64	5.64	5.31	9.59	10.03	13.05	13.57	6.89
Merged-chr4-133816455-2	chr4	133816357	133816557	+	772.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58274.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.88	8.8	2.28	6.03	9.0	6.27	5.98	8.8	3.74	6.03	2.01	5.01
Merged-chr1-72142099-2	chr1	72141994	72142194	+	772.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70213.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	9.69	3.02	0.0	3.22	7.77	6.59	8.3	7.74	12.39	7.03	14.57	11.59
Merged-chr13-99187038-3	chr13	99186952	99187152	+	772.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2229.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	8.48	5.03	14.26	5.23	4.09	5.02	6.64	9.17	13.57	8.54	6.03	11.9
Merged-chr5-99221021-3	chr5	99220903	99221103	+	772.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	RMER19C|LTR|ERVK	31924.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.69	15.59	6.28	7.24	11.86	18.5	7.64	6.73	12.98	20.08	15.07	4.39
Merged-chr11-101641447-3	chr11	101641371	101641571	+	772.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13522.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	21.4	18.11	13.69	16.09	4.09	6.9	8.3	2.05	7.08	7.03	15.07	1.88
Merged-chr9-3404612-3	chr9	3404507	3404707	+	772.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027545, intron 1 of 17)	intron (NM_027545, intron 1 of 17)	522.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	6.86	10.56	10.27	3.22	13.5	6.27	5.31	10.63	13.57	15.06	8.04	7.83
Merged-chr12-110934839-2	chr12	110934741	110934941	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175336, intron 10 of 20)	intron (NM_175336, intron 10 of 20)	43777.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	13.73	4.53	15.4	9.65	6.95	4.7	1.66	6.98	2.56	11.55	2.01	3.76
Merged-chr5-121453971-2	chr5	121453856	121454056	+	772.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029912, intron 1 of 9)	RMER10A|LTR|ERVL	1247.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	3.63	4.53	5.13	2.82	7.36	3.76	7.97	12.87	9.44	4.52	9.04	11.59
Merged-chr15-102283821-2	chr15	102283708	102283908	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4352.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	5.25	11.07	15.97	9.25	6.55	6.9	8.97	7.93	7.87	15.57	7.54	4.07
Merged-chr4-45010978-3	chr4	45010851	45011051	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	1461.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	4.04	8.8	6.28	7.24	3.68	7.53	9.3	6.81	4.92	4.02	4.02	6.27
Merged-chr1-36003960-2	chr1	36003866	36004066	+	772.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64434.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.63	5.53	8.56	8.85	5.73	6.9	15.28	12.7	8.85	5.52	6.53	5.01
Merged-chr14-105176426-2	chr14	105176369	105176569	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	858.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	10.5	7.04	6.28	3.62	5.32	12.54	6.64	8.69	10.23	12.55	10.55	8.77
Merged-chr6-56909112-3	chr6	56909023	56909223	+	772.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	-7237.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	10.5	6.54	6.85	14.48	6.14	14.42	7.97	12.17	16.13	13.05	16.08	9.71
Merged-chr13-24684683-3	chr13	24684573	24684773	+	772.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	46025.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	6.46	5.28	12.55	4.02	9.82	18.19	11.63	20.36	12.0	11.55	12.06	4.7
Merged-chr7-99674356-2	chr7	99674251	99674451	+	772.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	21458.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	9.29	8.05	17.11	11.66	10.23	12.54	6.64	15.2	5.31	3.51	2.01	8.14
Merged-chr2-155629500-1	chr2	155629400	155629600	+	772.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001085378, exon 29 of 42)	exon (NM_001085378, exon 29 of 42)	6620.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	2.42	3.77	1.14	3.62	6.55	7.84	5.65	5.94	2.16	0.5	1.0	5.33
Merged-chr10-57637839-2	chr10	57637760	57637960	+	772.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5879.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	7.67	9.06	8.56	9.25	9.0	3.45	8.97	15.95	12.0	6.03	3.52	5.33
Merged-chr14-31422626-3	chr14	31422519	31422719	+	772.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4942.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	12.92	4.02	7.99	7.64	18.0	14.42	13.29	14.19	15.34	9.04	10.55	11.59
Merged-chr5-113402871-3	chr5	113402776	113402976	+	772.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45582.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	6.06	3.77	14.83	16.09	17.18	18.19	40.19	30.84	11.8	7.53	11.05	8.14
Merged-chr14-57740876-2	chr14	57740789	57740989	+	772.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	5234.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	7.27	3.02	7.42	11.26	12.68	8.78	12.62	17.72	8.85	4.52	12.56	8.14
Merged-chr13-108268407-2	chr13	108268315	108268515	+	772.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-47922.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	4.85	6.54	2.28	7.24	4.5	10.03	5.98	8.02	18.49	12.55	11.56	9.08
Merged-chr1-119458467-2	chr1	119458365	119458565	+	772.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36217.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	5.25	6.79	2.85	10.46	12.27	11.92	2.33	9.31	11.21	3.51	16.58	10.65
Merged-chr11-120345436-4	chr11	120345236	120345436	+	772.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001313923)	TTS (NM_001313923)	2077.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	5.65	11.82	5.13	4.83	8.59	8.47	8.97	4.04	8.65	5.02	11.56	7.52
Merged-chr15-58797472-3	chr15	58797371	58797571	+	772.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25956.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.65	14.84	7.99	6.84	8.18	11.92	5.65	10.96	14.95	11.55	12.56	23.81
Merged-chr15-80704472-3	chr15	80704365	80704565	+	772.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6848.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	12.11	7.29	15.4	6.44	11.05	5.96	2.33	6.28	12.19	8.03	15.58	8.77
Merged-chr12-40544768-3	chr12	40544660	40544860	+	772.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	98707.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	16.96	6.79	11.98	4.83	10.64	13.17	3.65	9.45	12.0	11.05	22.11	11.28
Merged-chr4-137871115-3	chr4	137871026	137871226	+	772.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	L2|LINE|L2	8889.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	11.31	5.03	10.27	10.46	6.55	12.86	7.64	10.15	14.95	17.57	13.57	10.96
Merged-chr10-120366212-3	chr10	120366177	120366377	+	772.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23246.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	5.25	5.03	12.55	4.42	9.82	3.14	10.63	37.29	8.46	6.03	8.04	9.71
Merged-chr1-78894431-4	chr1	78894291	78894491	+	772.604187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	77480.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	4.44	4.02	5.7	4.02	6.95	2.82	10.63	5.07	7.08	3.51	7.03	3.45
Merged-chr9-62344551-6	chr9	62344474	62344674	+	772.592834	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CpG	3231.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	6.06	6.04	1.14	1.61	8.59	1.25	9.63	5.19	6.88	7.53	6.03	11.28
Merged-chr11-8607324-3	chr11	8607238	8607438	+	772.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	57197.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.46	6.29	10.84	13.27	11.05	10.03	6.98	6.73	13.37	23.6	23.62	9.71
Merged-chr11-5780319-5	chr11	5780237	5780437	+	772.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015577, exon 5 of 7)	non-coding (NR_015577, exon 5 of 7)	-8146.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.04	5.53	6.85	6.44	9.41	15.37	7.64	11.16	4.92	2.51	8.04	11.28
Merged-chr6-55182565-3	chr6	55182473	55182673	+	772.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-7583.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	15.34	14.84	12.55	12.47	11.45	7.53	9.3	14.36	7.47	8.54	20.6	7.52
Merged-chr16-10879661-3	chr16	10879544	10879744	+	772.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35153.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	8.88	8.3	11.41	6.84	9.41	14.74	8.97	8.8	13.57	4.02	15.58	12.84
Merged-chr11-79291453-3	chr11	79291364	79291564	+	772.537048	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-36769.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	11.31	4.78	8.56	10.05	18.0	12.54	3.99	6.53	10.23	7.53	11.56	5.01
Merged-chr16-42907601-2	chr16	42907518	42907718	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-27.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	4.04	4.78	7.42	3.22	7.77	8.15	7.31	8.36	10.62	10.04	5.02	10.02
Merged-chr4-149160101-2	chr4	149159997	149160197	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081274, exon 6 of 13)	exon (NM_001081274, exon 6 of 13)	5985.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	4.04	7.8	12.55	10.05	7.36	9.41	4.32	13.91	8.26	10.54	13.57	4.7
Merged-chr3-60505826-1	chr3	60505726	60505926	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	4647.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	8.08	4.02	2.85	5.23	2.05	7.84	5.65	7.04	13.18	8.03	3.52	3.45
Merged-chr6-67102255-1	chr6	67102155	67102355	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64848.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.25	6.54	0.0	6.03	6.55	5.02	4.32	9.56	2.75	3.01	3.01	2.51
Merged-chr10-88727349-3	chr10	88727249	88727449	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3752.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	5.65	8.3	1.14	11.26	3.68	12.23	3.99	9.93	11.8	19.08	10.05	8.46
Merged-chr10-67998217-1	chr10	67998117	67998317	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359319, intron 3 of 11)	intron (NM_001359319, intron 3 of 11)	18647.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.23	7.8	4.56	6.03	15.55	9.72	5.65	9.08	13.37	4.52	7.03	2.82
Merged-chr5-143269442-1	chr5	143269342	143269542	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017467, intron 1 of 6)	intron (NM_017467, intron 1 of 6)	580.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	6.86	5.28	7.42	6.44	7.36	6.59	0.33	7.32	7.67	0.0	1.51	3.76
Merged-chr11-82967755-1	chr11	82967655	82967855	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-7074.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	11.31	8.8	10.84	11.26	1.23	0.63	1.99	3.2	0.98	0.5	1.0	0.63
Merged-chr2-54085614-1	chr2	54085514	54085714	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023396)	promoter-TSS (NM_023396)	-62.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	2.42	4.02	0.0	2.01	4.09	4.08	3.99	8.58	6.49	3.51	7.03	5.01
Merged-chr7-6398733-2	chr7	6398637	6398837	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15419.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	6.06	7.55	3.99	4.83	13.09	3.14	8.3	10.37	7.87	5.52	11.05	11.59
Merged-chr2-173679422-2	chr2	173679320	173679520	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	19575.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	4.44	5.79	22.82	11.66	4.91	9.09	4.32	7.35	6.69	8.03	14.07	4.39
Merged-chr9-83536730-2	chr9	83536627	83536827	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-11611.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	8.88	5.53	2.28	6.44	13.91	6.9	8.3	9.06	15.74	10.04	5.02	5.01
Merged-chr1-88255703-1	chr1	88255603	88255803	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 34 of 41)	intron (NM_001281466, intron 34 of 41)	13705.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	2.02	3.52	3.42	1.61	6.95	2.82	5.98	6.39	2.95	5.02	4.02	12.84
Merged-chr13-56003976-2	chr13	56003876	56004076	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131574.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	2.42	5.79	6.28	7.24	15.96	15.99	12.62	14.02	9.24	14.06	5.53	7.83
Merged-chr14-22808460-1	chr14	22808360	22808560	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265662.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.02	3.27	4.56	6.44	5.73	5.02	7.64	10.65	6.88	2.51	13.57	9.08
Merged-chr3-83002375-2	chr3	83002271	83002471	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5353.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	6.46	7.8	1.14	4.02	4.5	13.17	4.65	9.39	6.49	8.03	6.03	2.82
Merged-chr9-37232613-1	chr9	37232513	37232713	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020258, intron 17 of 17)	intron (NM_020258, intron 17 of 17)	23125.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.23	3.77	2.28	4.83	3.68	4.39	13.95	12.95	0.98	0.0	0.0	1.25
Merged-chr4-141445514-3	chr4	141445412	141445612	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009541, intron 1 of 15)	intron (NM_009541, intron 1 of 15)	839.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	21.0	28.67	6.85	3.22	11.45	31.04	6.98	2.83	25.57	12.05	12.56	7.83
Merged-chr15-50819624-1	chr15	50819524	50819724	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69425.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	20.59	7.29	9.13	16.89	12.68	5.96	1.0	5.16	9.83	10.54	10.05	5.64
Merged-chr9-40811515-1	chr9	40811415	40811615	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10242.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	10.5	9.81	1.71	7.24	5.73	7.53	1.66	8.1	3.54	4.52	1.0	1.88
Merged-chr18-67366008-1	chr18	67365908	67366108	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007702, intron 3 of 4)	intron (NM_007702, intron 3 of 4)	-21905.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	6.06	5.53	5.7	4.02	7.36	6.59	7.31	8.72	5.31	1.0	7.54	5.01
Merged-chr7-99957653-2	chr7	99957565	99957765	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	22793.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	19.38	8.8	7.42	4.02	5.73	2.51	2.66	7.68	10.42	10.04	4.02	1.57
Merged-chr2-91098799-2	chr2	91098683	91098883	+	772.483337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	2105.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	2.42	3.77	6.85	6.44	10.23	7.53	10.96	6.36	14.75	13.56	17.08	6.58
Merged-chr11-31868174-3	chr11	31868168	31868368	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2672.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.44	5.03	8.56	10.46	1.64	2.51	2.66	6.79	6.69	5.52	6.53	8.46
Merged-chr7-144971181-3	chr7	144971079	144971279	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31254.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	10.09	6.79	10.27	7.24	13.91	5.02	10.63	12.9	10.82	19.08	13.57	5.64
Merged-chr10-95075307-3	chr10	95075226	95075426	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70499.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	8.88	5.28	10.84	8.04	18.0	22.89	33.22	39.59	7.47	18.08	8.54	9.71
Merged-chr18-88892574-3	chr18	88892458	88892658	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018821, intron 1 of 2)	intron (NM_018821, intron 1 of 2)	1649.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	8.08	4.53	6.85	10.05	16.77	9.41	15.61	16.88	12.19	4.02	15.07	6.58
Merged-chr10-53435412-2	chr10	53435308	53435508	+	772.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25526.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	2.83	6.79	7.42	6.44	13.91	7.53	11.29	8.72	7.67	9.54	6.03	5.95
Merged-chr4-99179655-3	chr4	99179554	99179754	+	772.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14280.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.86	8.05	4.56	1.61	4.91	9.72	6.64	6.06	25.37	25.11	13.57	7.83
Merged-chr15-55564943-3	chr15	55564913	55565113	+	772.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168250, intron 5 of 16)	intron (NM_001168250, intron 5 of 16)	7605.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.81	2.77	6.28	6.03	2.05	2.2	7.31	4.43	7.28	1.51	8.54	1.88
Merged-chr16-23224808-3	chr16	23224713	23224913	+	772.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145933)	promoter-TSS (NM_145933)	73.0	NM_145933	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.65	5.53	11.98	6.44	13.5	10.66	11.96	16.15	11.01	7.53	19.09	18.8
Merged-chr19-32884689-2	chr19	32884596	32884796	+	772.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	127119.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	9.69	4.53	10.27	6.44	7.77	16.93	15.28	15.67	6.88	5.52	8.04	1.57
Merged-chr7-73584212-2	chr7	73584117	73584317	+	772.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25822.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.04	5.03	11.41	7.24	7.36	7.21	2.99	9.28	15.54	10.54	13.57	8.14
Merged-chr12-81532841-2	chr12	81532725	81532925	+	772.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309848)	promoter-TSS (NM_001309848)	86.0	NM_001309847	105940408.0		NM_001309847	ENSMUSG00000021139	Gm20498	ARIP2a|Synj2bp-cox16	predicted gene 20498	protein-coding	5.65	6.29	6.28	4.02	8.59	6.27	5.65	9.95	5.51	3.01	8.54	6.89
Merged-chr17-73360462-2	chr17	73360360	73360560	+	772.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033444, exon 5 of 23)	exon (NM_001033444, exon 5 of 23)	38836.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	14.94	17.1	15.97	18.9	4.09	5.02	8.3	5.07	2.56	4.02	6.03	4.7
Merged-chr2-45042315-1	chr2	45042215	45042415	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-19138.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	6.06	6.79	3.42	16.89	13.09	9.41	2.99	6.62	4.72	8.54	7.54	4.7
Merged-chr9-96889508-1	chr9	96889408	96889608	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289646)	promoter-TSS (NM_001289646)	-34.0	NM_001289647	235534.0	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	8.48	3.27	2.85	4.42	2.86	8.78	9.3	8.27	5.11	11.55	5.53	6.27
Merged-chr2-4458495-3	chr2	4458398	4458598	+	772.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	57522.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.44	5.28	7.99	10.05	5.73	6.9	1.99	6.87	32.26	16.57	41.2	13.78
Merged-chr17-12210888-1	chr17	12210788	12210988	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026644, intron 5 of 8)	intron (NM_026644, intron 5 of 8)	91604.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	4.85	3.52	1.71	2.41	6.95	7.21	4.65	8.07	7.47	6.03	4.02	9.08
Merged-chr13-30630201-3	chr13	30630081	30630281	+	772.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15138.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	14.54	9.56	9.13	13.27	6.95	10.66	5.98	14.72	17.7	8.03	8.54	8.14
Merged-chr9-99379706-3	chr9	99379622	99379822	+	772.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21192.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	10.09	5.28	18.25	12.87	4.09	3.45	5.98	8.94	8.26	4.52	9.04	7.21
Merged-chr18-36530013-1	chr18	36529913	36530113	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271546, exon 5 of 22)	exon (NM_001271546, exon 5 of 22)	1861.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	3.23	7.8	3.42	2.41	5.73	7.84	8.64	4.29	4.72	6.03	12.06	5.64
Merged-chr1-5508585-1	chr1	5508485	5508685	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-79908.0	NM_001204371	18387.0	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	0.4	4.28	2.28	9.25	10.23	8.78	8.3	6.76	4.92	4.52	4.52	7.52
Merged-chr4-137807666-2	chr4	137807562	137807762	+	772.325012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11278.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	11.71	3.27	15.97	17.29	9.41	6.27	6.64	11.94	6.29	2.01	5.02	9.71
Merged-chr5-106887647-5	chr5	106887537	106887737	+	772.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177873, intron 20 of 39)	intron (NM_177873, intron 20 of 39)	38253.0	NM_177873	330149.0	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	7.67	1.76	3.99	4.42	0.82	1.57	1.99	3.9	4.33	2.01	5.02	4.07
Merged-chr13-20172363-3	chr13	20172284	20172484	+	772.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	81877.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	15.34	11.07	12.55	14.48	9.82	8.15	8.97	8.41	13.57	8.54	6.53	6.58
Merged-chr5-21383684-3	chr5	21383593	21383793	+	772.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11020.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	7.67	7.55	3.99	7.64	13.5	2.2	5.98	15.06	10.62	15.06	13.57	5.33
Merged-chr9-41191341-2	chr9	41191262	41191462	+	772.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14793.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.85	10.31	7.99	4.02	3.68	18.19	8.64	6.48	7.47	9.04	7.03	9.71
Merged-chr11-34049165-1	chr11	34049065	34049265	+	772.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2237.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	8.08	6.29	8.56	5.63	11.05	17.25	1.66	3.73	11.8	19.08	10.05	8.77
Merged-chr8-71527362-2	chr8	71527288	71527488	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10049.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	4.04	11.07	2.85	4.42	0.0	1.25	0.0	0.59	19.87	10.54	9.04	3.76
Merged-chr2-168579704-1	chr2	168579604	168579804	+	772.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	10661.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	13.73	4.78	7.42	2.82	6.55	12.86	6.31	7.79	4.33	1.0	1.0	1.57
Merged-chrX-169859891-2	chrX	169859799	169859999	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	-19720.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	12.11	4.78	13.69	11.26	11.45	9.41	5.65	17.1	7.87	15.06	4.02	2.51
Merged-chr13-45955909-3	chr13	45955712	45955912	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	9179.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.25	4.02	5.13	6.44	8.18	5.33	1.99	2.13	5.9	4.52	3.52	4.39
Merged-chr1-164586292-3	chr1	164586188	164586388	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	82981.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	6.86	3.27	12.55	12.07	13.91	5.02	6.64	14.66	6.69	8.54	17.59	6.58
Merged-chr13-29855511-3	chr13	29855416	29855616	+	772.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308486, intron 1 of 5)	intron (NM_001308486, intron 1 of 5)	157.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	7.67	8.8	16.54	10.46	7.77	8.15	10.96	9.76	13.37	14.06	17.59	11.28
Merged-chr3-109249031-3	chr3	109248894	109249094	+	772.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-91689.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.46	6.04	7.42	1.21	10.64	11.92	5.65	2.5	15.74	17.57	13.57	6.89
Merged-chr19-53143284-3	chr19	53143185	53143385	+	772.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	529.0	NM_001164100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	10.09	9.81	10.84	10.46	12.68	5.02	14.28	10.96	9.24	11.05	14.57	9.71
Merged-chr6-89256156-1	chr6	89256056	89256256	+	772.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29569.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	2.83	3.27	3.99	3.22	8.18	9.72	6.64	9.03	9.83	3.51	8.04	6.58
Merged-chr5-122989302-3	chr5	122989213	122989413	+	772.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	-41.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	6.86	10.06	4.56	8.45	8.18	10.03	7.97	7.07	13.77	10.04	6.53	9.4
Merged-chr14-8115994-3	chr14	8115888	8116088	+	772.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	17777.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	8.08	10.06	8.56	5.63	12.68	17.56	22.26	20.38	11.8	5.02	17.08	5.95
Merged-chr7-104447916-2	chr7	104447821	104448021	+	772.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009099, intron 1 of 7)	Lx|LINE|L1	-1796.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	4.44	5.03	4.56	7.24	12.68	9.41	1.33	9.39	10.62	7.53	7.03	8.77
Merged-chr11-78080864-3	chr11	78080768	78080968	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	-485.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	10.5	10.31	14.83	8.04	10.23	12.23	2.99	12.67	10.23	12.55	7.54	10.34
Merged-chr16-76680768-3	chr16	76680687	76680887	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98305.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	7.67	5.79	7.99	14.88	9.82	11.92	6.64	16.29	14.75	7.03	18.09	7.83
Merged-chr10-18995718-3	chr10	18995626	18995826	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16237.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	14.13	12.32	6.85	1.61	9.0	13.48	4.65	9.0	11.6	18.08	9.04	4.7
Merged-chr15-76285657-3	chr15	76285557	76285757	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028852, intron 4 of 4)	B2_Mm2|SINE|B2	5311.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	12.92	6.79	6.85	4.83	10.64	15.05	9.63	7.32	19.47	14.06	23.11	5.95
Merged-chr1-162549213-2	chr1	162549107	162549307	+	772.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-862.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	4.04	3.52	3.42	8.04	10.64	1.88	11.29	14.72	10.42	9.54	10.05	3.76
Merged-chr15-53558596-2	chr15	53558496	53558696	+	772.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	55683.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	11.31	11.32	15.4	7.24	8.18	4.7	2.99	7.54	5.51	12.05	7.54	3.45
Merged-chr4-132011651-2	chr4	132011533	132011733	+	772.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	37445.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.85	3.77	3.42	5.63	6.14	6.27	3.32	7.74	9.83	11.55	6.53	7.52
Merged-chr4-142045513-3	chr4	142045435	142045635	+	772.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	27637.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	6.06	13.83	13.12	7.24	4.5	13.48	11.63	25.32	9.24	10.04	8.04	12.53
Merged-chr4-43523594-3	chr4	43523442	43523642	+	772.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	12.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	2.42	6.04	12.55	8.45	6.95	5.96	11.29	10.85	9.24	8.54	12.56	9.71
Merged-chr5-107724901-1	chr5	107724801	107725001	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010278)	promoter-TSS (NM_010278)	-558.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.4	5.79	5.7	5.23	0.0	0.94	2.66	3.67	1.18	0.5	5.02	1.57
Merged-chr12-72084735-1	chr12	72084635	72084835	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026038, exon 1 of 5)	exon (NM_026038, exon 1 of 5)	578.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	8.08	6.04	4.56	6.03	12.68	4.7	12.95	7.07	16.13	7.53	11.05	12.53
Merged-chr13-94005968-1	chr13	94005868	94006068	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51828.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.65	2.77	6.85	1.61	6.14	8.47	7.97	7.35	6.69	5.02	5.02	4.39
Merged-chr5-91960168-1	chr5	91960068	91960268	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026557, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	2388.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.0	3.02	6.85	3.22	9.82	12.23	7.31	9.56	13.57	1.51	5.02	6.27
Merged-chr7-30309441-1	chr7	30309341	30309541	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198027, intron 1 of 6)	intron (NM_198027, intron 1 of 6)	688.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	5.65	6.29	3.99	3.22	14.73	2.82	2.99	6.79	7.47	4.02	4.52	6.27
Merged-chr18-23431120-2	chr18	23431022	23431222	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15713.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	1.51	1.14	0.8	15.96	18.5	16.28	28.6	9.05	17.57	6.53	6.58
Merged-chr4-53109458-1	chr4	53109358	53109558	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	50437.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.42	1.01	1.71	0.8	9.41	5.33	4.98	9.64	9.05	4.52	3.52	2.51
Merged-chrX-13456834-1	chrX	13456734	13456934	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-10838.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	9.29	5.28	6.85	4.83	10.64	4.08	13.29	0.14	5.7	1.0	6.03	5.95
Merged-chr3-79664955-1	chr3	79664855	79665055	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	35876.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	3.23	3.27	5.7	0.8	6.55	1.88	1.99	6.73	6.49	6.03	6.53	3.45
Merged-chr7-81235302-1	chr7	81235202	81235402	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	21498.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	8.48	2.77	7.99	6.44	10.23	5.02	6.31	7.04	8.85	9.04	7.03	0.94
Merged-chr13-64126119-2	chr13	64126024	64126224	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 1 of 11)	MTD|LTR|ERVL-MaLR	3206.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.83	3.52	10.27	4.42	2.05	1.25	6.64	6.56	11.21	8.03	28.14	19.42
Merged-chr3-138134002-1	chr3	138133902	138134102	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163457, exon 3 of 20)	exon (NM_001163457, exon 3 of 20)	-2349.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	3.63	3.02	2.85	3.62	4.5	2.2	3.99	9.06	1.77	0.5	2.51	1.25
Merged-chr2-3769431-1	chr2	3769331	3769531	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	55973.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.67	3.52	1.71	3.22	2.86	5.96	4.32	10.23	11.01	7.03	11.56	9.08
Merged-chr13-77135170-1	chr13	77135070	77135270	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	298.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	10.09	15.59	11.98	18.9	12.68	13.48	24.58	13.54	16.33	8.54	21.61	20.36
Merged-chr6-57703927-1	chr6	57703827	57704027	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	Lx8|LINE|L1	1472.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	1.21	3.27	0.0	2.41	7.36	6.27	8.64	9.06	4.33	1.51	8.54	4.39
Merged-chr2-90488439-1	chr2	90488339	90488539	+	772.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	B3|SINE|B2	-9265.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.23	3.52	2.85	4.02	2.45	1.25	0.66	3.0	9.64	8.03	16.08	7.83
Merged-chr6-17481236-3	chr6	17481135	17481335	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	17278.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	5.65	6.29	14.83	13.27	11.86	8.15	14.95	8.75	7.67	6.03	7.03	5.95
Merged-chr1-195002952-2	chr1	195002858	195003058	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-14441.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.63	2.52	10.27	30.97	15.55	15.05	12.62	17.8	5.51	9.54	11.05	6.27
Merged-chr17-87639472-1	chr17	87639372	87639572	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008532, intron 2 of 9)	intron (NM_008532, intron 2 of 9)	3493.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	6.06	5.79	8.56	4.02	9.41	10.03	2.99	7.09	5.11	4.02	6.53	1.57
Merged-chr9-124015477-1	chr9	124015377	124015577	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-6494.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.81	4.02	1.71	1.21	7.36	3.76	6.64	6.56	2.75	1.0	5.53	2.51
Merged-chr10-89744281-2	chr10	89744192	89744392	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-699.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	7.27	3.52	4.56	1.61	9.41	0.63	3.99	10.12	6.29	10.04	13.06	7.21
Merged-chr14-17982103-1	chr14	17982003	17982203	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009380, exon 1 of 7)	exon (NM_009380, exon 1 of 7)	459.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.81	1.26	11.41	1.21	1.64	2.2	1.66	1.09	2.56	3.01	2.01	2.51
Merged-chr4-28176970-2	chr4	28176870	28177070	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-636161.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	8.08	10.06	7.99	8.04	12.68	5.33	10.96	17.86	14.75	16.07	7.54	13.16
Merged-chr15-36911558-1	chr15	36911458	36911658	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	95844.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	4.04	3.52	5.7	10.05	4.91	2.51	2.33	2.94	7.28	6.03	7.03	2.82
Merged-chr4-43285632-2	chr4	43285529	43285729	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 2 of 28)	Lx2B|LINE|L1	18470.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.04	10.31	11.41	16.49	5.32	7.21	4.32	5.07	0.0	0.0	0.5	0.63
Merged-chr3-41042386-1	chr3	41042286	41042486	+	772.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40660.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	8.88	5.53	0.0	6.44	1.23	2.82	1.99	2.16	4.13	12.05	16.08	5.33
Merged-chr18-38211232-1	chr18	38211132	38211332	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1470.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.63	1.76	0.0	0.8	1.64	1.57	0.0	2.44	3.54	1.51	3.52	5.64
Merged-chr14-25516221-3	chr14	25516114	25516314	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	MIR|SINE|MIR	-18225.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	11.31	4.53	1.14	10.86	22.91	37.32	23.58	30.87	9.44	8.54	2.01	2.51
Merged-chr12-78791423-1	chr12	78791323	78791523	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019579, intron 1 of 14)	intron (NM_019579, intron 1 of 14)	42476.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	5.65	1.76	6.28	2.01	4.5	5.02	2.99	9.7	5.11	8.54	7.03	4.07
Merged-chr6-66395347-3	chr6	66395253	66395453	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	122848.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	9.69	12.07	6.28	4.83	0.82	3.76	5.98	5.78	35.8	14.56	32.66	20.05
Merged-chr5-33372589-1	chr5	33372489	33372689	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021500, exon 9 of 9)	3' UTR (NM_021500, exon 9 of 9)	-6107.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	6.06	4.28	6.28	4.83	6.14	1.57	5.98	9.45	4.52	1.51	6.03	5.33
Merged-chr15-6277940-3	chr15	6277854	6278054	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21835.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	10.5	6.79	17.68	5.63	18.82	16.62	8.64	9.98	14.75	28.12	17.08	7.83
Merged-chr1-62679148-2	chr1	62679048	62679248	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24169.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	8.88	7.55	6.85	12.07	4.5	9.09	4.65	9.0	3.93	0.5	10.05	1.88
Merged-chr7-126667671-1	chr7	126667571	126667771	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029339, intron 4 of 9)	L1MC4|LINE|L1	8747.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	6.86	10.06	0.57	0.0	11.86	19.44	5.98	2.92	10.23	5.52	3.52	4.39
Merged-chr2-153632379-1	chr2	153632279	153632479	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195390, intron 1 of 9)	intron (NM_001195390, intron 1 of 9)	402.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	6.06	4.28	6.85	4.42	8.18	5.64	10.63	7.04	7.67	5.52	15.58	4.07
Merged-chr12-79060955-2	chr12	79060842	79061042	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181073, intron 7 of 28)	intron (NM_181073, intron 7 of 28)	28728.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	8.08	5.28	15.97	4.83	9.41	16.93	15.28	15.59	13.57	6.03	5.53	6.89
Merged-chr4-54857201-2	chr4	54857100	54857300	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90745.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	9.69	3.02	7.99	10.05	4.5	1.25	6.64	9.34	0.98	0.0	0.0	0.0
Merged-chr18-68163107-1	chr18	68163007	68163207	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-64839.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.83	1.76	2.28	2.41	2.86	0.63	5.98	5.61	0.0	0.0	0.0	0.0
Merged-chr6-67168917-1	chr6	67168817	67169017	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-98062.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.04	6.54	7.99	11.26	5.73	10.66	5.98	10.29	3.54	9.04	7.54	7.52
Merged-chr11-101181065-1	chr11	101180965	101181165	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016782, intron 8 of 23)	B3A|SINE|B2	4948.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	14.13	10.06	5.7	2.41	8.18	4.08	1.66	4.32	9.44	9.54	8.04	6.58
Merged-chr12-85094167-1	chr12	85094067	85094267	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001361239, exon 1 of 5)	exon (NM_001361239, exon 1 of 5)	1448.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	4.85	2.01	7.99	3.62	8.59	5.02	2.66	7.32	11.8	8.54	4.52	0.94
Merged-chr4-84065342-1	chr4	84065242	84065442	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20463.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	3.23	1.26	0.0	0.4	11.05	9.09	3.99	6.14	0.0	1.0	1.0	2.19
Merged-chr13-58593347-3	chr13	58593276	58593476	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022317, intron 1 of 17)	MER67A|LTR|ERV1	17501.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	8.48	5.79	9.7	8.04	4.91	10.66	6.31	8.75	12.19	16.57	19.6	10.02
Merged-chr6-16842692-1	chr6	16842592	16842792	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 4 of 6)	intron (NM_031198, intron 4 of 6)	55749.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.65	3.27	6.28	5.63	12.27	5.64	3.99	10.37	6.88	2.01	6.03	3.45
Merged-chr6-115468155-2	chr6	115468064	115468264	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	46098.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	9.29	6.04	7.42	22.93	13.91	2.51	6.31	11.05	4.33	5.52	5.02	5.01
Merged-chr18-68052911-2	chr18	68052783	68052983	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119710.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.88	6.54	6.85	12.47	18.41	28.85	11.96	17.24	7.08	10.54	9.04	6.58
Merged-chr14-76942107-1	chr14	76942007	76942207	+	772.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94510.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	0.81	3.52	3.42	0.0	0.0	4.08	1.33	3.06	8.85	19.58	12.56	9.71
Merged-chr7-27488053-3	chr7	27487961	27488161	+	771.994446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	1108.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	9.29	9.56	11.41	4.83	9.0	9.09	9.3	4.12	11.41	11.55	17.59	10.02
Merged-chr4-147928632-3	chr4	147928475	147928675	+	771.976196	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 5 of 18)	intron (NM_011122, intron 5 of 18)	8201.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	4.44	5.03	4.56	6.84	4.91	7.53	9.63	6.98	10.03	4.52	13.57	10.02
Merged-chr3-69374182-3	chr3	69374085	69374285	+	771.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178726, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	57267.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	12.11	5.03	1.71	12.47	9.0	5.02	5.98	9.93	11.8	11.55	10.05	4.39
Merged-chr9-121385300-3	chr9	121385195	121385395	+	771.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	2501.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	8.48	9.06	3.42	14.08	13.09	13.8	4.65	5.8	16.52	16.57	10.55	9.4
Merged-chr10-99349542-2	chr10	99349444	99349644	+	771.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86313.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	9.29	11.82	8.56	7.24	15.96	26.97	22.92	5.92	15.54	2.51	10.05	5.33
Merged-chr1-173456549-3	chr1	173456454	173456654	+	771.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 5 of 8)	intron (NM_001013779, intron 5 of 8)	35950.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	9.29	6.29	12.55	9.65	10.23	15.05	3.65	10.49	22.42	8.03	17.08	11.59
Merged-chr12-85781859-3	chr12	85781755	85781955	+	771.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	35316.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	10.9	15.59	17.11	16.49	18.41	20.7	22.26	17.24	8.65	0.5	13.57	8.77
Merged-chr1-184628933-1	chr1	184628833	184629033	+	771.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-71242.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.81	3.02	9.13	2.41	13.09	8.78	6.31	7.15	7.47	6.03	8.04	4.39
Merged-chr4-134913588-2	chr4	134913493	134913693	+	771.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027935, intron 1 of 6)	B2_Mm2|SINE|B2	1323.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.04	9.31	16.54	2.41	5.73	5.02	4.65	2.52	13.37	13.56	10.05	5.64
Merged-chr15-39840852-1	chr15	39840752	39840952	+	771.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164466, intron 4 of 9)	intron (NM_001164466, intron 4 of 9)	16618.0	NM_001164466	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	3.23	11.57	4.56	6.44	7.36	12.86	3.65	9.36	4.72	4.52	8.54	7.52
Merged-chr4-95180596-1	chr4	95180496	95180696	+	771.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.08	4.28	7.99	5.23	17.59	5.96	6.31	9.59	10.42	7.03	10.55	5.95
Merged-chr16-36704910-3	chr16	36704836	36705036	+	771.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10958.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	11.31	9.56	9.7	4.42	7.36	12.86	12.95	10.35	11.8	10.04	8.54	6.27
Merged-chr13-41029483-3	chr13	41029389	41029589	+	771.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 11 of 11)	intron (NM_001145802, intron 11 of 11)	13239.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	8.08	6.79	14.26	8.45	10.23	9.41	3.99	14.13	16.33	9.54	8.04	7.21
Merged-chr8-71670844-3	chr8	71670749	71670949	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 1 of 41)	G-rich|Low_complexity|Low_complexity	908.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	6.46	2.26	0.0	4.83	9.0	7.84	2.99	10.96	10.82	11.05	18.59	6.58
Merged-chr6-43642513-3	chr6	43642382	43642582	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	L2|LINE|L2	23796.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	5.25	2.26	10.84	15.69	4.5	5.33	7.31	10.68	6.1	4.52	13.57	4.7
Merged-chr5-107611813-3	chr5	107611722	107611922	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13861.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	10.9	13.08	6.85	11.26	3.27	10.66	6.98	10.82	11.41	10.54	19.09	7.52
Merged-chr11-29871574-1	chr11	29871474	29871674	+	771.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-45906.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.25	8.05	6.28	7.64	9.82	10.66	6.64	7.26	3.15	4.02	6.53	2.51
Merged-chr2-122702588-1	chr2	122702488	122702688	+	771.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290993)	promoter-TSS (NM_001290993)	75.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	3.63	2.77	3.42	5.23	3.68	8.47	8.64	7.74	2.56	1.51	3.52	3.76
Merged-chr16-57546010-3	chr16	57545884	57546084	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-3258.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.42	3.27	2.85	8.04	5.73	4.08	7.97	15.22	6.69	6.03	5.53	3.76
Merged-chr7-29043086-3	chr7	29042978	29043178	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	40616.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	13.73	5.03	6.28	17.29	5.32	19.44	7.31	4.04	8.85	8.03	9.04	8.46
Merged-chr6-83683213-1	chr6	83683113	83683313	+	771.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-5356.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.85	4.02	2.28	4.83	5.73	6.27	5.65	11.72	7.47	4.52	4.02	10.96
Merged-chr9-40713360-2	chr9	40713276	40713476	+	771.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	27412.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	12.52	13.58	11.41	11.26	9.0	9.41	5.65	8.13	0.39	0.0	0.0	0.0
Merged-chr9-99517685-2	chr9	99517578	99517778	+	771.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001166138)	TTS (NM_001166138)	47257.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	5.65	2.77	12.55	9.65	9.82	4.39	8.64	11.52	11.6	5.52	17.08	4.7
Merged-chr10-71353907-2	chr10	71353801	71354001	+	771.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	6138.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	3.63	5.28	7.42	8.85	10.64	3.45	28.23	31.93	9.83	3.01	6.53	2.51
Merged-chr19-42094744-2	chr19	42094611	42094811	+	771.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	4276.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	8.88	8.05	11.41	11.26	7.36	8.47	8.3	9.34	4.52	2.51	1.51	3.13
Merged-chr15-3270126-2	chr15	3270021	3270221	+	771.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-646.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.23	7.55	6.85	4.02	8.18	9.09	4.32	6.98	9.44	3.51	12.06	5.33
Merged-chr2-73487089-3	chr2	73486993	73487193	+	771.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1340.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	14.94	10.82	10.27	8.85	18.82	11.92	14.95	22.32	10.62	7.03	14.57	10.96
Merged-chr14-55783332-7	chr14	55783242	55783442	+	771.596436	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080435, intron 2 of 25)	intron (NM_080435, intron 2 of 25)	730.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	5.25	6.04	11.41	8.04	10.64	9.09	3.65	5.19	12.78	8.54	11.05	7.83
Merged-chr15-59652434-2	chr15	59652297	59652497	+	771.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3743.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.04	3.02	8.56	4.83	2.45	12.23	5.65	7.71	2.95	6.03	5.53	4.39
Merged-chr3-89317007-3	chr3	89316892	89317092	+	771.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5887.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	12.11	13.08	11.98	2.41	12.68	15.05	3.99	4.99	14.16	14.56	12.56	7.21
Merged-chr1-152870991-2	chr1	152870902	152871102	+	771.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005507, intron 1 of 21)	intron (NM_001005507, intron 1 of 21)	31643.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.48	7.55	8.56	6.44	6.14	12.86	7.97	9.5	5.11	3.51	13.06	6.58
Merged-chr2-103947071-1	chr2	103946971	103947171	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-10924.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.04	5.03	3.42	4.02	9.41	8.78	7.31	10.04	4.52	6.53	9.04	5.95
Merged-chr2-59207409-1	chr2	59207309	59207509	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46559.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.85	4.28	4.56	0.0	5.73	5.33	8.3	9.11	4.72	4.02	5.53	2.19
Merged-chr8-108625772-1	chr8	108625672	108625872	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41095.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.81	5.03	1.71	3.62	7.36	7.84	3.32	13.32	3.15	10.54	7.03	2.82
Merged-chr19-60962813-1	chr19	60962713	60962913	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	73064.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.04	6.54	5.7	4.83	9.0	3.14	7.97	6.95	3.54	7.53	5.02	1.57
Merged-chr3-21820339-1	chr3	21820239	21820439	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-256313.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.83	3.52	3.42	2.01	8.18	2.82	4.98	9.08	9.05	4.52	5.53	3.45
Merged-chr6-67060217-2	chr6	67060117	67060317	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-22810.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	12.11	12.83	14.83	4.02	6.55	8.78	7.97	7.01	9.64	10.04	15.58	3.76
Merged-chr8-114452922-2	chr8	114452824	114453024	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	13272.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.63	5.28	5.7	9.65	1.64	7.53	2.33	10.57	12.0	6.53	14.07	4.07
Merged-chr16-92705826-2	chr16	92705704	92705904	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-8475.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.63	4.02	7.99	9.25	18.41	8.47	10.96	15.5	3.74	3.01	11.05	7.21
Merged-chr11-88222135-1	chr11	88222035	88222235	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Eulor3|DNA?|DNA?	17747.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	1.21	3.27	3.42	4.83	9.0	7.53	7.31	10.77	0.0	2.01	0.0	0.63
Merged-chr12-5268086-4	chr12	5267960	5268160	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	107622.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.85	5.53	7.99	11.26	6.14	2.51	6.98	9.81	4.92	9.04	9.04	4.07
Merged-chr6-4797481-2	chr6	4797382	4797582	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50176.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.04	6.29	6.85	6.03	15.55	3.14	7.97	7.15	16.13	15.06	14.07	6.58
Merged-chr9-118807847-2	chr9	118807717	118807917	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96125.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.44	9.56	10.84	4.02	9.41	3.45	4.65	7.49	7.08	5.52	2.01	10.96
Merged-chr7-90442275-3	chr7	90442138	90442338	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	-543.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	11.71	8.05	2.85	7.64	1.64	9.72	5.65	10.12	5.51	8.03	12.06	7.52
Merged-chr5-29195860-1	chr5	29195760	29195960	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289757)	promoter-TSS (NM_001289757)	-133.0	NM_001289757	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.4	2.26	0.0	0.8	9.0	3.14	6.98	6.93	2.36	2.51	3.01	5.33
Merged-chr6-71478267-1	chr6	71478167	71478367	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15610.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	2.42	3.52	11.41	3.62	2.05	10.03	5.98	6.42	6.49	4.02	3.01	5.95
Merged-chr1-151499887-1	chr1	151499787	151499987	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360844, intron 1 of 8)	intron (NM_001360844, intron 1 of 8)	1104.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	8.48	5.79	9.7	2.41	15.14	35.75	7.64	7.6	11.6	11.55	3.01	3.76
Merged-chr16-92869860-3	chr16	92869755	92869955	+	771.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43781.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.83	7.04	10.27	8.45	15.14	8.15	7.64	15.08	21.83	12.55	18.59	9.4
Merged-chr12-108644759-2	chr12	108644656	108644856	+	771.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	9003.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	6.46	6.04	5.7	2.41	18.41	8.78	8.97	6.11	16.13	18.58	22.61	8.77
Merged-chr11-119229115-3	chr11	119229007	119229207	+	771.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	535.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	9.29	10.31	10.84	9.25	20.05	9.72	7.64	5.33	13.18	22.09	13.57	11.9
Merged-chr9-31163389-2	chr9	31163199	31163399	+	771.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 9 of 17)	intron (NM_001357698, intron 9 of 17)	-31500.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.42	1.26	2.85	6.03	3.68	2.82	5.65	5.38	1.57	5.52	2.51	1.88
Merged-chr8-122762804-3	chr8	122762688	122762888	+	771.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	-27.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	5.25	13.08	10.27	7.64	12.27	8.47	4.65	7.88	21.05	9.04	23.11	15.98
Merged-chr19-6827040-2	chr19	6826972	6827172	+	771.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	2872.0	NR_039555	100628576.0		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA	6.86	4.53	1.14	9.65	4.5	8.15	11.63	11.05	9.83	3.51	8.54	4.39
Merged-chr14-72564122-3	chr14	72564017	72564217	+	771.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	145886.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.85	8.05	17.11	11.26	18.0	7.53	19.6	27.06	18.1	19.58	11.56	9.71
Merged-chr5-124443306-3	chr5	124443195	124443395	+	771.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	-2204.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	10.9	12.58	9.13	6.44	2.45	0.63	11.96	6.17	11.41	11.05	10.55	7.83
Merged-chr2-32095532-2	chr2	32095434	32095634	+	771.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145521)	promoter-TSS (NM_145521)	6.0	NM_001355238	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	5.65	5.53	7.99	5.63	8.59	10.66	8.3	8.3	9.24	11.55	17.08	6.58
Merged-chr1-153431922-3	chr1	153431833	153432033	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033162, intron 2 of 9)	ORR1D2|LTR|ERVL-MaLR	6724.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	7.67	10.56	6.85	6.84	9.41	21.01	2.99	13.12	16.33	21.09	14.57	5.64
Merged-chr2-129298480-3	chr2	129298382	129298582	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040371, intron 1 of 4)	B3A|SINE|B2	1112.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	15.75	15.85	8.56	7.24	10.64	21.95	6.31	1.12	8.26	11.55	5.02	5.01
Merged-chr18-23885733-1	chr18	23885633	23885833	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-68955.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.04	10.31	4.56	1.61	7.77	6.27	9.63	11.58	7.28	6.03	10.55	8.14
Merged-chr4-57947115-1	chr4	57947015	57947215	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	GC_rich|Low_complexity|Low_complexity	9296.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.86	4.28	2.28	5.63	6.55	14.74	4.98	8.3	6.88	7.03	5.02	6.27
Merged-chr1-79629882-1	chr1	79629782	79629982	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	42090.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.85	16.85	15.97	9.25	0.82	1.88	3.99	2.83	2.95	0.0	2.01	3.45
Merged-chr17-86950430-3	chr17	86950343	86950543	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2556.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	4.85	12.58	10.27	0.8	6.14	21.01	14.28	0.5	15.93	17.07	4.52	1.25
Merged-chr9-21012027-3	chr9	21011928	21012128	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-3912.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	10.9	13.08	6.85	5.63	11.05	21.32	12.62	3.22	20.46	11.55	7.03	5.64
Merged-chr9-24517001-2	chr9	24516904	24517104	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13864.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	10.9	13.08	4.56	10.05	9.41	9.41	8.64	11.52	5.9	13.56	24.12	6.27
Merged-chr5-67608963-1	chr5	67608863	67609063	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033415, intron 1 of 1)	intron (NM_001033415, intron 1 of 1)	1080.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	2.83	2.77	3.42	0.0	4.91	9.09	5.98	7.09	10.82	8.03	5.53	5.33
Merged-chr8-79734507-1	chr8	79734407	79734607	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357237, intron 5 of 5)	intron (NM_001357237, intron 5 of 5)	22658.0	NM_001357236	68999.0	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	9.29	6.54	7.42	3.22	10.23	9.09	2.33	7.46	10.42	4.52	5.53	7.21
Merged-chr2-73910701-3	chr2	73910667	73910867	+	771.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301721, intron 2 of 4)	CpG	559.0	NM_175015	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	9.29	8.55	9.13	4.83	13.91	7.21	20.93	7.96	8.65	10.54	8.54	7.52
Merged-chr12-70915354-3	chr12	70915267	70915467	+	771.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22490.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	12.11	8.05	15.97	12.47	12.68	10.66	16.94	11.97	10.23	8.54	16.58	5.95
Merged-chr13-23542645-2	chr13	23542535	23542735	+	771.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178197)	TTS (NM_178197)	809.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	11.71	9.06	14.26	8.04	8.18	5.64	4.98	4.01	7.08	6.03	20.6	18.17
Merged-chr13-103505223-1	chr13	103505123	103505323	+	771.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-170731.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	2.83	7.29	7.42	3.22	6.55	10.03	8.97	9.17	4.13	1.0	7.54	2.82
Merged-chr6-37197019-1	chr6	37196919	37197119	+	771.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	102957.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	1.21	5.53	11.98	12.47	10.64	5.02	12.29	15.42	5.7	7.53	9.04	9.4
Merged-chr7-29129013-3	chr7	29128906	29129106	+	771.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-3855.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	7.67	11.57	9.13	13.27	11.86	4.7	9.63	8.8	10.03	8.03	12.06	8.77
Merged-chr4-136462766-5	chr4	136462693	136462893	+	771.206665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6968.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	8.08	3.27	2.28	3.22	1.64	5.96	3.99	4.57	7.08	10.04	6.53	9.4
Merged-chr9-120602946-3	chr9	120602862	120603062	+	771.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25631.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	8.88	4.53	5.13	9.25	19.23	15.68	12.95	12.56	19.08	10.04	13.06	11.59
Merged-chr11-59561928-3	chr11	59561836	59562036	+	771.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	9802.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	11.31	9.81	29.66	24.13	14.73	10.35	3.99	10.54	7.08	7.53	16.08	8.77
Merged-chr11-5061951-3	chr11	5061815	5062015	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144560, intron 6 of 6)	CpG	3412.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	14.13	8.05	1.14	4.42	11.86	9.41	5.31	1.46	9.44	4.52	4.52	3.45
Merged-chr9-120098919-3	chr9	120098852	120099052	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6819.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	9.29	10.06	2.85	1.61	7.77	12.54	1.99	8.19	5.31	9.54	8.54	6.58
Merged-chr5-97914096-3	chr5	97914000	97914200	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133738, intron 16 of 16)	intron (NM_133738, intron 16 of 16)	116862.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	16.56	8.55	25.67	29.76	3.27	5.33	2.33	5.33	13.77	8.54	20.6	2.51
Merged-chr18-80294119-3	chr18	80294004	80294204	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190373)	TTS (NM_001190373)	37798.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	13.73	10.82	7.99	1.21	11.05	11.92	3.99	6.62	6.1	4.52	8.04	6.58
Merged-chr1-36815280-2	chr1	36815164	36815364	+	771.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	36280.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	12.11	5.79	9.7	14.48	6.55	6.9	17.94	17.69	4.92	2.01	8.54	4.07
Merged-chr12-12323757-2	chr12	12323655	12323855	+	771.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	61616.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.86	5.03	6.28	5.63	10.64	8.15	8.64	14.22	4.92	11.05	12.56	12.22
Merged-chr3-9913459-2	chr3	9913372	9913572	+	771.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79793.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.46	3.27	4.56	3.62	8.18	9.09	9.63	11.16	3.74	12.05	15.07	3.13
Merged-chr19-57354893-2	chr19	57354809	57355009	+	771.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5990.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	6.06	9.06	4.56	6.03	11.45	18.81	10.3	9.76	8.06	12.05	4.02	7.21
Merged-chr15-62127989-3	chr15	62127901	62128101	+	771.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88744.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	12.52	11.32	9.13	7.64	21.27	7.84	12.29	21.36	9.44	15.57	13.57	6.89
Merged-chr7-29237711-3	chr7	29237616	29237816	+	771.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	122.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	8.48	10.31	14.83	8.85	16.36	8.15	7.31	5.16	28.72	22.59	24.12	15.35
Merged-chr4-156234849-3	chr4	156234772	156234972	+	771.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198305)	promoter-TSS (NM_198305)	-15.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	10.09	6.29	7.99	6.03	10.23	10.98	11.63	5.78	14.95	12.05	18.09	11.59
Merged-chr19-6487315-2	chr19	6487204	6487404	+	771.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	55766.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	4.04	4.02	7.99	4.02	5.73	7.53	6.64	12.17	10.03	8.03	13.06	14.72
Merged-chr8-123253097-3	chr8	123252982	123253182	+	771.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028200, intron 1 of 14)	intron (NM_028200, intron 1 of 14)	-1113.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	4.44	10.31	26.24	11.66	6.95	11.92	9.63	14.83	8.65	13.05	13.57	14.72
Merged-chr1-182516976-3	chr1	182516875	182517075	+	771.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 1 of 20)	intron (NM_009794, intron 1 of 20)	635.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	12.92	13.08	13.69	6.44	5.32	6.27	6.31	10.6	9.44	15.06	12.06	13.16
Merged-chr2-75830526-3	chr2	75830430	75830630	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1647.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	8.48	7.55	7.99	4.83	4.5	12.86	3.32	11.1	8.65	14.56	2.51	6.27
Merged-chr11-20585816-1	chr11	20585716	20585916	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	42563.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.85	3.52	4.56	2.41	4.91	10.35	2.66	6.45	6.29	3.51	9.04	4.39
Merged-chr8-67855835-1	chr8	67855735	67855935	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	-37540.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	1.62	0.0	1.71	4.02	1.64	0.94	6.31	7.71	0.59	1.51	4.02	0.94
Merged-chr17-10558867-1	chr17	10558767	10558967	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	Lx8|LINE|L1	102651.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.63	3.77	4.56	7.24	6.95	7.84	22.59	22.21	6.1	2.01	8.54	8.46
Merged-chr5-43877095-3	chr5	43876984	43877184	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8275.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.86	7.04	3.99	10.46	6.55	16.31	11.29	2.75	9.83	5.52	14.57	2.82
Merged-chr12-99349871-1	chr12	99349771	99349971	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 2 of 5)	intron (NM_183186, intron 2 of 5)	100203.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.04	4.02	5.13	2.01	9.0	7.53	11.29	8.1	6.69	7.03	13.57	5.01
Merged-chr13-22035128-3	chr13	22035029	22035229	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	514.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	13.33	8.05	6.28	14.48	4.91	14.11	6.98	5.21	11.21	11.55	17.59	12.84
Merged-chr2-158613713-1	chr2	158613613	158613813	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2955.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	8.48	4.28	3.42	0.0	6.95	7.21	0.66	5.72	4.13	8.03	9.55	11.28
Merged-chr19-5365964-1	chr19	5365864	5366064	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	399.0	NM_001038231	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	15.75	10.31	14.83	6.03	7.36	6.59	3.65	1.77	11.6	5.02	4.52	4.07
Merged-chr11-69767237-1	chr11	69767137	69767337	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1325.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	9.69	7.55	10.84	24.53	5.73	5.64	9.3	9.84	13.77	12.05	17.08	19.11
Merged-chr2-180127864-1	chr2	180127764	180127964	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	8498.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	1.21	2.26	18.83	4.83	6.14	6.27	3.99	9.64	1.97	4.02	3.52	1.57
Merged-chr16-87697959-1	chr16	87697859	87698059	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-995.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.83	2.52	5.13	1.61	3.27	4.08	10.3	5.94	2.95	0.5	1.0	1.25
Merged-chr17-86668067-1	chr17	86667967	86668167	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85797.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	1.62	0.25	1.14	7.64	1.23	6.9	4.98	12.79	5.31	3.51	4.52	4.39
Merged-chr1-132312308-1	chr1	132312208	132312408	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3817.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	5.65	7.55	5.13	2.41	6.14	6.27	7.64	5.19	5.31	2.51	6.03	4.7
Merged-chr10-79696208-1	chr10	79696108	79696308	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008504)	TTS (NM_008504)	2382.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	4.04	7.55	9.7	3.22	17.59	13.48	5.65	3.81	6.69	5.02	8.04	5.01
Merged-chr4-55638561-2	chr4	55638447	55638647	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106072.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.08	3.77	7.99	7.64	2.86	10.66	4.32	10.37	7.08	5.02	7.54	6.27
Merged-chr5-135134329-1	chr5	135134229	135134429	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152882, intron 14 of 16)	ZP3AR|Satellite|Satellite	-15382.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	6.06	10.56	6.28	4.02	4.91	3.45	6.31	9.53	6.69	5.52	7.03	4.07
Merged-chr7-107748143-2	chr7	107748048	107748248	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001205227)	TTS (NM_001205227)	9884.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	8.48	6.79	5.7	6.44	3.68	3.45	8.97	10.09	5.9	3.01	4.52	4.07
Merged-chr18-46604941-1	chr18	46604841	46605041	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	7237.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	3.23	6.04	5.7	0.8	2.05	7.84	3.32	5.5	5.51	2.01	1.51	4.07
Merged-chr8-68884472-1	chr8	68884372	68884572	+	771.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	3917.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.21	3.27	0.57	1.61	0.41	0.63	0.33	1.07	9.83	4.02	10.55	1.88
Merged-chr2-24304713-1	chr2	24304613	24304813	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13517.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	3.23	3.52	5.7	5.63	6.55	3.45	6.31	9.42	4.52	3.51	8.04	6.27
Merged-chr3-58376936-2	chr3	58376837	58377037	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37783.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	2.83	5.03	7.42	6.44	10.23	8.47	8.97	10.18	7.28	11.05	13.57	12.84
Merged-chr14-118813227-1	chr14	118813127	118813327	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	25356.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	1.62	4.28	1.14	4.02	4.09	5.33	5.31	6.31	0.79	0.0	3.52	1.25
Merged-chr13-110558512-1	chr13	110558412	110558612	+	771.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163468.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.02	0.0	1.14	0.8	1.23	0.0	1.0	0.95	22.82	9.54	19.09	8.14
Merged-chr18-64599975-1	chr18	64599875	64600075	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	61025.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	1.62	1.01	2.28	2.01	4.09	7.21	3.99	4.79	1.18	1.51	1.0	0.63
Merged-chr11-77980418-2	chr11	77980331	77980531	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2385.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	6.06	9.56	9.13	3.22	11.45	10.98	1.99	4.71	12.98	10.04	10.05	3.76
Merged-chr7-34957034-2	chr7	34956938	34957138	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	44631.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	6.46	4.53	17.11	14.48	2.45	3.76	7.31	9.64	2.95	2.51	6.03	2.51
Merged-chr3-84843793-1	chr3	84843693	84843893	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	-20352.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.08	1.76	1.14	4.02	9.41	1.25	1.99	7.54	4.92	8.54	6.53	6.89
Merged-chr10-122682323-2	chr10	122682211	122682411	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	2996.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	8.48	11.32	6.28	6.44	14.32	12.86	7.31	12.95	8.65	4.02	8.04	3.45
Merged-chr3-103803075-1	chr3	103802975	103803175	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-54.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	11.31	2.77	7.99	4.42	6.95	0.94	12.62	7.04	5.11	3.51	13.57	6.27
Merged-chr8-83235580-1	chr8	83235480	83235680	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111304, intron 5 of 20)	intron (NM_001111304, intron 5 of 20)	-54768.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	3.23	2.52	3.42	4.42	5.32	1.57	9.97	6.25	3.54	2.51	1.0	0.94
Merged-chr9-20652596-1	chr9	20652496	20652696	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023371, intron 1 of 3)	intron (NM_023371, intron 1 of 3)	466.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	5.65	4.28	3.99	9.65	2.45	5.64	6.31	6.62	6.1	9.04	6.53	4.7
Merged-chr12-103986089-2	chr12	103985999	103986199	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166350, exon 2 of 5)	exon (NM_001166350, exon 2 of 5)	3844.0	NM_199314	380780.0	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	20.59	15.34	21.68	5.23	0.0	0.0	0.0	0.34	8.06	3.01	4.02	6.58
Merged-chr1-39418044-1	chr1	39417944	39418144	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	50193.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	6.06	1.76	6.85	4.02	11.05	5.33	10.63	4.65	2.16	4.02	8.54	4.39
Merged-chr12-59040140-2	chr12	59039986	59040186	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21386.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	5.25	1.51	6.85	0.8	11.05	7.53	9.97	8.05	5.9	9.04	4.02	5.95
Merged-chr5-18043215-2	chr5	18043092	18043292	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80622.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	14.94	4.78	3.42	2.41	9.0	4.7	7.31	13.68	9.24	4.02	15.58	10.65
Merged-chr18-34595999-2	chr18	34595889	34596089	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177773, exon 1 of 6)	exon (NM_177773, exon 1 of 6)	1479.0	NM_177773	271508.0	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	5.25	4.53	5.13	3.22	6.55	6.27	8.3	9.7	10.62	21.59	14.57	3.76
Merged-chr17-67345961-2	chr17	67345846	67346046	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	8513.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	9.69	9.06	5.7	2.41	8.18	16.31	5.98	4.09	10.23	8.03	4.52	7.21
Merged-chr6-82042931-1	chr6	82042831	82043031	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	1303.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	3.63	5.53	4.56	5.23	4.91	6.9	4.98	8.61	0.98	1.51	0.0	0.94
Merged-chr4-46607821-1	chr4	46607721	46607921	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198664, intron 10 of 12)	intron (NM_198664, intron 10 of 12)	-5892.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.62	6.29	4.56	2.82	7.77	6.27	2.33	8.97	5.11	3.51	7.03	5.33
Merged-chr18-14813220-1	chr18	14813120	14813320	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001100449, exon 7 of 15)	exon (NM_001100449, exon 7 of 15)	29975.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	1.62	0.5	1.14	3.22	5.32	3.14	3.65	8.55	2.75	4.02	4.52	0.63
Merged-chr8-35678534-2	chr8	35678424	35678624	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-89504.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	3.27	9.7	3.62	7.36	5.64	8.3	9.39	5.11	2.01	4.52	5.95
Merged-chr2-32447369-3	chr2	32447251	32447451	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-3106.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	6.86	6.04	11.98	3.62	13.5	11.92	0.66	8.02	14.55	10.54	14.57	6.58
Merged-chr14-57729574-1	chr14	57729474	57729674	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4844.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.85	5.03	2.85	5.23	10.64	6.59	5.31	9.87	0.59	1.0	1.51	5.01
Merged-chr7-142389428-1	chr7	142389328	142389528	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1558.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.81	2.52	1.14	0.4	3.27	2.2	3.32	1.96	2.75	1.51	0.5	4.07
Merged-chr12-30922596-1	chr12	30922496	30922696	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289480, intron 2 of 8)	intron (NM_001289480, intron 2 of 8)	10927.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.0	3.02	7.42	4.02	4.5	9.72	4.32	6.03	4.72	8.03	13.06	5.64
Merged-chr12-72389056-1	chr12	72388956	72389156	+	771.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	19998.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	1.62	1.26	0.0	0.0	0.0	0.0	6.31	3.08	6.49	8.54	13.57	15.98
Merged-chr1-172451271-3	chr1	172451158	172451358	+	770.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24102.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	10.09	13.58	9.13	16.89	13.91	8.15	15.28	5.58	5.7	11.55	12.06	7.83
Merged-chr1-131379186-3	chr1	131379118	131379318	+	770.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-99655.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	10.9	8.3	2.28	7.24	15.14	15.99	6.64	12.76	16.13	15.06	9.55	6.89
Merged-chr3-10249567-3	chr3	10249468	10249668	+	770.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357159, intron 3 of 4)	IAPEY4_LTR|LTR|ERVK	4657.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	8.88	14.84	33.09	16.89	20.86	10.66	8.3	8.21	14.36	11.05	19.09	6.58
Merged-chr8-85557733-3	chr8	85557624	85557824	+	770.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2453.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	6.46	4.78	11.98	11.26	9.41	21.01	6.31	8.41	27.73	29.12	25.63	10.65
Merged-chr13-107810228-3	chr13	107810142	107810342	+	770.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	79822.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	13.33	6.79	13.12	5.23	13.91	6.27	11.63	8.1	14.75	7.53	11.56	10.02
Merged-chr7-84188366-2	chr7	84188264	84188464	+	770.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36471.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.83	2.26	1.14	3.22	3.27	5.02	6.98	7.57	17.11	10.04	11.05	5.95
Merged-chr1-157076407-3	chr1	157076277	157076477	+	770.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32273.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	12.52	10.82	5.7	9.65	4.91	4.39	3.65	5.58	6.69	9.54	14.07	7.83
Merged-chr14-27336626-4	chr14	27336582	27336782	+	770.887512	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	645.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.06	4.53	7.99	6.03	5.73	8.15	7.64	4.15	9.05	9.04	3.52	9.08
Merged-chr9-47528647-3	chr9	47528533	47528733	+	770.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1537.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	9.29	14.84	11.41	22.52	10.23	10.66	5.31	12.2	7.08	6.53	20.1	7.52
Merged-chr8-71668798-2	chr8	71668685	71668885	+	770.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	2972.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	5.25	6.29	7.99	14.88	4.09	9.09	4.32	7.29	10.42	14.56	18.09	13.47
Merged-chr3-122619150-2	chr3	122619036	122619236	+	770.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 1 of 15)	CpG	578.0	NM_153118	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	10.5	9.56	15.97	8.45	14.32	8.47	10.96	8.21	11.41	13.05	24.62	8.77
Merged-chr7-16256293-2	chr7	16256267	16256467	+	770.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	2971.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.85	4.28	0.0	1.21	2.86	6.9	4.98	0.98	3.54	3.01	1.0	7.52
Merged-chr15-38485636-3	chr15	38485524	38485724	+	770.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4923.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	15.75	6.79	12.55	12.47	11.45	15.05	2.99	13.04	22.42	14.06	16.08	11.59
Merged-chr11-117306901-3	chr11	117306801	117307001	+	770.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24814.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	8.08	13.08	7.99	12.07	17.59	5.64	5.31	11.55	7.47	9.04	14.07	7.52
Merged-chr19-37602625-2	chr19	37602538	37602738	+	770.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	52220.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	10.09	7.04	8.56	11.66	8.59	17.87	3.65	10.99	8.85	8.54	7.54	6.27
Merged-chr18-60809673-3	chr18	60809574	60809774	+	770.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 4 of 8)	intron (NM_001042605, intron 4 of 8)	-2402.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	3.23	8.3	9.13	2.82	1.64	7.53	1.99	1.35	17.51	20.59	10.55	5.33
Merged-chr1-154096295-3	chr1	154096202	154096402	+	770.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104885.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	10.09	5.53	7.42	6.84	13.5	8.78	8.64	10.74	13.37	19.08	11.05	10.65
Merged-chr8-66340985-2	chr8	66340877	66341077	+	770.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-45324.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	2.42	6.04	9.13	6.44	2.86	8.78	17.94	29.75	5.31	4.02	12.06	13.47
Merged-chr13-9494307-1	chr13	9494207	9494407	+	770.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	217782.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	2.02	2.01	6.28	2.41	8.59	3.76	7.31	8.89	12.19	1.51	3.01	5.33
Merged-chr1-177703035-2	chr1	177702933	177703133	+	770.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26781.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	3.63	2.01	13.12	3.62	6.55	13.8	4.65	10.82	21.05	14.06	18.59	8.46
Merged-chr9-61443606-3	chr9	61443495	61443695	+	770.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71229.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	5.65	6.54	18.25	9.25	12.68	14.42	9.63	15.0	12.39	1.51	14.57	22.87
Merged-chr8-128358745-9	chr8	128358701	128358901	+	770.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008737)	promoter-TSS (NM_008737)	-272.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	12.11	13.83	5.7	14.08	7.77	10.03	12.29	8.24	8.65	7.53	8.04	9.71
Merged-chr5-105005239-3	chr5	105005122	105005322	+	770.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22505.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.85	10.56	15.97	11.26	10.64	7.84	4.32	6.06	11.01	10.04	10.55	2.51
Merged-chr14-25397200-1	chr14	25397100	25397300	+	770.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61985.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.65	5.28	1.14	3.62	2.86	14.42	9.63	6.22	5.7	4.02	5.53	3.13
Merged-chr4-115980866-3	chr4	115980785	115980985	+	770.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37039.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	11.71	6.04	14.83	7.64	7.77	5.96	7.64	5.92	19.67	7.03	26.13	9.4
Merged-chr2-18917537-3	chr2	18917434	18917634	+	770.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	80587.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	12.52	10.31	14.83	2.01	17.18	8.15	4.98	7.07	9.24	13.56	11.05	10.02
Merged-chr8-72273958-1	chr8	72273858	72274058	+	770.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33940.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.25	1.01	1.14	3.22	6.55	6.27	6.98	8.21	2.95	7.03	8.04	4.07
Merged-chr18-53091053-2	chr18	53090961	53091161	+	770.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-85231.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	9.69	8.05	6.28	15.69	0.41	0.63	1.33	3.28	16.92	6.03	22.11	6.27
Merged-chr3-104637802-2	chr3	104637739	104637939	+	770.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-825.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	7.67	5.79	10.27	11.66	7.77	6.9	2.99	12.11	4.52	0.5	5.53	5.01
Merged-chr13-44469814-2	chr13	44469656	44469856	+	770.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30029.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.46	3.52	1.71	2.82	6.55	10.66	3.99	6.5	12.59	6.03	8.04	2.51
Merged-chr6-32586373-2	chr6	32586267	32586467	+	770.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	1825.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.04	5.28	7.99	13.67	4.5	9.41	9.97	7.23	11.21	5.02	7.54	3.76
Merged-chr18-4170406-2	chr18	4170309	4170509	+	770.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	4577.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.46	5.03	3.42	5.63	14.32	10.98	11.63	12.39	11.21	10.54	14.07	8.46
Merged-chr6-115823985-2	chr6	115823887	115824087	+	770.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110506, intron 1 of 8)	intron (NM_001110506, intron 1 of 8)	14425.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	4.04	3.27	5.13	2.01	11.45	6.27	2.99	8.19	9.83	12.05	9.55	7.52
Merged-chr19-24225076-2	chr19	24224975	24225175	+	770.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360392)	promoter-TSS (NM_001360392)	53.0	NM_011597	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	12.52	12.32	17.11	10.46	4.91	4.39	6.31	7.51	2.36	2.01	3.52	0.0
Merged-chr8-126527466-2	chr8	126527375	126527575	+	770.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52410.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	11.71	5.79	11.41	9.65	11.05	10.35	11.96	18.45	9.44	2.01	7.03	5.33
Merged-chr14-55014526-3	chr14	55014434	55014634	+	770.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-920.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	3.63	3.02	3.42	0.8	10.23	11.29	5.98	5.13	7.08	4.02	2.51	9.08
Merged-chr5-99541751-3	chr5	99541665	99541865	+	770.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	187295.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.85	7.04	10.27	7.24	8.18	16.31	11.29	4.37	14.55	16.07	18.09	2.51
Merged-chr9-31198818-3	chr9	31198735	31198935	+	770.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357698, intron 1 of 17)	intron (NM_001357698, intron 1 of 17)	13013.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	4.04	7.29	7.42	9.25	6.95	10.03	4.98	10.4	13.77	11.05	17.08	5.95
Merged-chr18-80524855-1	chr18	80524755	80524955	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19691.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	8.88	2.26	11.98	7.24	3.27	5.96	6.64	8.97	2.16	1.0	5.02	5.33
Merged-chr4-43966020-1	chr4	43965920	43966120	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8318.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	4.85	1.76	0.57	0.8	1.23	6.9	6.31	6.53	6.69	8.03	10.05	4.39
Merged-chr16-94501700-2	chr16	94501588	94501788	+	770.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007834, intron 6 of 7)	intron (NM_007834, intron 6 of 7)	24941.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	10.5	4.28	5.7	4.83	16.36	2.2	3.65	9.93	3.74	2.51	3.01	4.07
Merged-chr14-67097127-1	chr14	67097027	67097227	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24656.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.81	4.28	3.99	3.22	10.64	1.88	6.31	6.9	3.74	8.03	5.53	4.07
Merged-chr9-56079790-2	chr9	56079696	56079896	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10180.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	1.21	5.03	3.99	2.41	7.36	6.59	9.63	9.28	6.88	4.02	15.07	7.83
Merged-chr6-13073205-3	chr6	13073102	13073302	+	770.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	3443.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	6.46	10.06	7.42	7.64	13.91	8.47	13.62	18.34	17.7	8.03	13.57	8.77
Merged-chr1-182614680-1	chr1	182614580	182614780	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130890, intron 12 of 20)	intron (NM_130890, intron 12 of 20)	49673.0	NM_130890	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	6.06	11.82	3.99	6.44	1.64	7.53	6.31	6.5	7.08	5.52	7.03	1.25
Merged-chr5-67419613-1	chr5	67419513	67419713	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	8186.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	1.62	2.77	4.56	4.83	1.23	7.53	4.98	6.67	0.59	0.0	3.01	0.94
Merged-chr6-117802248-1	chr6	117802148	117802348	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38933.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.75	4.56	6.44	4.91	5.96	16.28	15.48	1.57	4.02	4.52	1.25
Merged-chr13-91421856-1	chr13	91421756	91421956	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33771.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.81	2.01	1.71	1.61	5.32	5.02	3.32	9.14	3.34	1.0	7.03	1.57
Merged-chr13-58366579-1	chr13	58366479	58366679	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11632.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	2.83	0.25	10.27	6.44	7.77	7.84	1.99	7.43	8.26	5.52	5.53	3.13
Merged-chr14-25768491-1	chr14	25768391	25768591	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101433, intron 1 of 3)	CpG	365.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.65	2.77	5.7	2.82	9.82	4.7	4.65	5.13	7.87	6.53	7.03	5.64
Merged-chr16-50397098-1	chr16	50396998	50397198	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	MER5A|DNA|hAT-Charlie	35291.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	2.42	3.02	0.0	4.83	4.91	5.64	5.98	5.44	6.1	5.02	2.51	5.01
Merged-chr3-129985005-1	chr3	129984905	129985105	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207209, intron 22 of 23)	intron (NM_207209, intron 22 of 23)	-14799.0	NM_001293644	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	5.65	3.52	5.7	4.42	6.95	5.64	6.64	10.77	0.59	0.5	1.0	1.57
Merged-chr8-60631714-1	chr8	60631614	60631814	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1111.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	3.63	1.01	0.0	3.22	6.95	3.45	6.31	2.05	0.59	3.01	2.01	0.31
Merged-chr5-3474135-1	chr5	3474035	3474235	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-69698.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.06	1.26	3.42	10.05	5.73	3.45	7.64	8.13	2.36	1.51	7.54	2.82
Merged-chr9-85324406-2	chr9	85324347	85324547	+	770.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001160378, exon 3 of 3)	3' UTR (NM_001160378, exon 3 of 3)	2677.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.46	1.51	6.28	8.04	5.32	8.15	4.98	8.66	9.83	5.02	7.03	8.14
Merged-chr11-109380845-3	chr11	109380745	109380945	+	770.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359034)	TTS (NM_001359034)	-17191.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	12.92	15.09	11.41	7.24	8.18	10.35	2.66	10.09	14.16	19.08	10.05	11.9
Merged-chr18-36803062-3	chr18	36803025	36803225	+	770.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1362.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	7.27	7.04	11.41	4.83	7.77	5.33	7.97	6.39	9.64	5.52	6.03	8.14
Merged-chr6-87531690-2	chr6	87531603	87531803	+	770.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	1556.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.06	5.03	10.27	7.64	13.5	8.78	8.3	16.09	18.29	4.52	11.56	8.77
Merged-chr8-111177990-3	chr8	111177896	111178096	+	770.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 11 of 25)	RSINE1|SINE|B4	-32498.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	8.08	3.02	7.99	5.63	20.46	8.15	8.97	8.13	22.42	16.57	11.05	7.83
Merged-chr18-38380325-2	chr18	38380243	38380443	+	770.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38564.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.48	7.29	5.7	6.84	9.82	10.35	10.63	7.23	15.54	6.03	10.55	5.33
Merged-chr9-61707838-2	chr9	61707808	61708008	+	770.404785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	206602.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	7.67	9.31	9.7	7.24	3.27	5.33	6.64	6.62	4.33	5.52	6.03	5.33
Merged-chr11-61498930-2	chr11	61498836	61499036	+	770.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-4670.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	10.09	9.31	2.28	5.63	11.05	5.96	1.33	3.03	11.41	14.06	18.59	8.14
Merged-chr12-99154379-2	chr12	99154297	99154497	+	770.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8411.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	8.48	8.05	7.42	10.46	9.41	7.21	9.3	9.31	5.9	5.02	15.07	3.45
Merged-chr8-126563883-3	chr8	126563781	126563981	+	770.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29555.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	19.38	12.07	13.69	6.44	18.41	30.42	9.97	11.72	22.42	17.07	13.06	11.59
Merged-chr8-125227386-2	chr8	125227305	125227505	+	770.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	173210.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.62	5.03	1.14	2.01	12.27	7.84	7.64	11.5	9.05	11.05	9.04	13.78
Merged-chr17-86187975-3	chr17	86187875	86188075	+	770.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	ORR1C2|LTR|ERVL-MaLR	20190.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	5.65	4.28	29.66	11.26	11.86	1.57	6.64	9.81	18.49	13.05	25.63	8.77
Merged-chr5-32728990-2	chr5	32728895	32729095	+	770.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17347.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	9.29	10.06	5.13	8.45	17.59	5.64	9.63	4.6	1.18	0.5	0.0	0.31
Merged-chr13-60624346-2	chr13	60624305	60624505	+	770.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	22194.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	10.9	6.79	6.28	4.42	6.14	13.17	3.32	5.66	1.38	2.51	6.03	0.31
Merged-chr11-84354556-2	chr11	84354458	84354658	+	770.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	158943.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	5.25	4.02	7.99	7.24	16.36	4.7	11.63	9.95	7.28	10.04	10.05	6.89
Merged-chr1-191267912-3	chr1	191267813	191268013	+	770.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43459.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	10.09	5.53	7.42	13.67	15.96	15.37	13.95	13.77	9.64	2.51	10.55	8.77
Merged-chr6-113761924-3	chr6	113761806	113762006	+	770.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 15 of 19)	intron (NM_001036684, intron 15 of 19)	-21225.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.86	13.33	11.98	6.44	6.55	12.86	8.3	12.76	8.65	10.04	10.55	13.16
Merged-chr15-31611249-1	chr15	31611149	31611349	+	770.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	9133.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	5.25	4.78	6.85	2.01	11.86	5.02	5.31	7.49	4.13	6.03	12.56	2.82
Merged-chr11-75152908-3	chr11	75152833	75153033	+	770.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	15219.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.27	8.8	18.25	9.25	13.09	12.86	11.63	20.22	8.46	14.06	13.06	11.59
Merged-chr6-119480123-7	chr6	119480027	119480227	+	770.285706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133940, exon 1 of 1)	exon (NM_133940, exon 1 of 1)	459.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	8.08	5.79	5.13	4.83	8.18	8.15	4.98	9.2	8.06	7.53	4.02	9.08
Merged-chr3-100534571-3	chr3	100534468	100534668	+	770.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-45376.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	6.86	5.53	10.27	20.11	9.82	5.96	20.93	26.47	14.75	12.05	37.18	21.3
Merged-chr11-106818538-3	chr11	106818420	106818620	+	770.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166685, intron 18 of 18)	intron (NM_001166685, intron 18 of 18)	29268.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	12.11	8.05	11.41	4.42	18.41	12.86	9.3	14.38	13.18	6.03	10.55	9.71
Merged-chr6-108407625-3	chr6	108407519	108407719	+	770.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-82124.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	8.88	5.53	13.69	10.46	10.64	15.05	9.97	23.24	7.87	12.55	14.07	10.96
Merged-chr10-12957483-3	chr10	12957359	12957559	+	770.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	6800.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	7.67	7.8	10.27	7.24	10.23	16.31	11.63	17.52	19.28	9.04	28.64	8.77
Merged-chr15-59081380-5	chr15	59081293	59081493	+	770.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	CpG	633.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	14.13	2.77	3.42	11.26	11.05	7.84	9.63	8.89	10.42	13.56	8.04	10.02
Merged-chr1-36569544-3	chr1	36569487	36569687	+	770.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11206.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.67	3.52	11.41	18.9	13.09	12.23	9.3	8.92	10.62	13.05	13.06	5.95
Merged-chr17-48097114-3	chr17	48097023	48097223	+	770.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6745.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	16.15	8.55	8.56	6.84	14.32	16.62	8.64	9.08	12.78	9.54	12.06	10.96
Merged-chr4-62696115-2	chr4	62696012	62696212	+	770.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134257, intron 11 of 15)	intron (NM_134257, intron 11 of 15)	22138.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	14.13	8.05	3.99	5.63	8.18	13.8	8.3	11.19	5.11	3.01	6.53	2.82
Merged-chr14-16519228-1	chr14	16519128	16519328	+	770.200012	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	56248.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	8.48	13.33	17.11	9.65	0.0	0.31	0.0	0.36	0.39	0.0	0.0	0.0
Merged-chr14-79107011-3	chr14	79106906	79107106	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027906, intron 37 of 44)	intron (NM_027906, intron 37 of 44)	92184.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	3.63	9.31	5.7	12.47	9.82	5.02	7.64	8.83	5.7	3.01	9.55	8.46
Merged-chr13-5922889-3	chr13	5922786	5922986	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61397.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	10.5	8.3	7.42	10.86	7.77	9.41	3.32	11.5	17.31	10.04	13.57	6.89
Merged-chr13-107917773-3	chr13	107917677	107917877	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27713.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	8.08	5.28	13.69	4.83	11.86	10.66	10.63	6.62	14.55	10.04	30.65	13.16
Merged-chr2-113648367-3	chr2	113648275	113648475	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-36715.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	12.11	11.57	3.42	4.02	13.91	11.92	4.98	13.15	17.9	20.08	20.1	5.95
Merged-chr1-58720952-3	chr1	58720849	58721049	+	770.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	7663.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	2.83	10.06	9.7	10.05	18.0	11.92	7.97	9.5	12.98	13.56	14.07	6.89
Merged-chr5-121871211-4	chr5	121871065	121871265	+	770.145813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	22168.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.23	4.02	5.13	5.23	4.91	3.45	4.32	1.54	2.16	5.52	9.55	5.01
Merged-chr10-31400487-2	chr10	31400331	31400531	+	770.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359365, intron 1 of 6)	RLTR22_Mur|LTR|ERVK	14004.0	NM_011509	100041294.0	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	4.04	2.52	0.57	5.63	0.41	5.64	5.31	3.67	4.13	4.02	5.02	2.19
Merged-chr3-89210945-2	chr3	89210834	89211034	+	770.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	3401.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	12.11	10.06	5.7	8.85	8.59	6.9	3.65	7.35	9.83	10.04	12.06	5.33
Merged-chr11-78792752-2	chr11	78792657	78792857	+	770.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33838.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	9.29	3.27	12.55	7.24	13.09	10.66	8.97	9.36	11.21	6.53	9.55	7.21
Merged-chr2-44961232-3	chr2	44961153	44961353	+	770.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61924.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	8.48	6.54	5.7	6.84	18.41	10.98	6.64	14.41	13.18	17.07	10.55	6.58
Merged-chr3-21992353-3	chr3	21992263	21992463	+	770.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84289.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.27	9.81	17.68	15.69	15.14	7.21	7.31	11.89	11.01	9.54	22.61	5.95
Merged-chr11-99132562-3	chr11	99132472	99132672	+	770.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22505.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	9.69	16.1	13.69	6.84	7.36	10.03	10.63	3.14	20.06	8.03	20.6	5.33
Merged-chr4-132815218-3	chr4	132815137	132815337	+	770.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-18873.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	17.36	5.79	4.56	6.84	11.45	16.62	1.33	6.25	21.24	19.08	14.07	11.9
Merged-chr10-25298376-3	chr10	25298270	25298470	+	770.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	Lx5c|LINE|L1	793.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.06	6.54	7.99	10.46	13.91	5.64	9.63	12.56	9.64	14.06	6.03	9.4
Merged-chr10-80313832-2	chr10	80313714	80313914	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011789, exon 14 of 14)	exon (NM_011789, exon 14 of 14)	6734.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	8.88	6.29	7.99	16.89	12.27	12.54	8.3	11.5	6.1	8.54	5.02	5.64
Merged-chr10-95680324-1	chr10	95680224	95680424	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116178.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	8.88	1.51	2.28	4.42	6.55	5.96	5.65	17.19	3.34	5.52	11.05	7.83
Merged-chr14-73257552-1	chr14	73257452	73257652	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	19661.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	1.21	1.51	3.42	5.63	3.68	5.02	9.63	6.31	5.31	6.03	7.54	1.88
Merged-chr4-63357219-3	chr4	63357137	63357337	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013623, intron 3 of 5)	intron (NM_013623, intron 3 of 5)	1075.0	NM_013623	18407.0	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	8.08	8.55	9.7	3.62	16.77	26.34	8.3	6.7	16.52	12.05	10.55	5.33
Merged-chr7-31112202-1	chr7	31112102	31112302	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	-1205.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	6.46	3.27	3.99	6.03	5.32	6.59	11.96	5.89	15.54	6.53	7.03	5.64
Merged-chr9-116079366-3	chr9	116079256	116079456	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96007.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	9.69	3.52	5.13	12.47	20.86	13.17	13.29	15.25	11.6	11.05	9.55	13.78
Merged-chr5-65073441-2	chr5	65073341	65073541	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34127.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	2.42	14.09	14.83	2.41	1.64	9.09	0.0	1.68	10.03	0.0	11.05	3.45
Merged-chr2-10979254-1	chr2	10979154	10979354	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-193128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.65	0.5	4.56	7.24	2.45	6.27	4.32	11.8	3.34	1.0	2.01	0.63
Merged-chr6-120172785-1	chr6	120172685	120172885	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	L1MD3|LINE|L1	-21038.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	12.11	1.01	10.27	12.07	15.55	8.78	14.28	18.28	8.65	8.03	4.52	10.65
Merged-chr4-117190926-1	chr4	117190826	117191026	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-8302.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	1.62	0.75	1.14	2.01	2.86	4.39	6.98	6.62	1.97	2.51	5.02	2.51
Merged-chr8-125620417-1	chr8	125620317	125620517	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35779.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	5.65	7.55	5.7	4.02	4.5	4.08	7.31	9.73	8.46	5.52	10.55	5.33
Merged-chr10-8736132-3	chr10	8736028	8736228	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 16 of 19)	PB1D10|SINE|Alu	149942.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.21	2.52	9.13	13.67	3.68	6.9	6.31	14.72	16.13	9.04	25.12	7.83
Merged-chr15-77368344-3	chr15	77368239	77368439	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30771.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	7.67	17.86	5.7	8.04	17.59	19.44	5.31	18.45	12.98	5.02	19.09	9.08
Merged-chr7-97270494-1	chr7	97270394	97270594	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	55470.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	2.42	1.01	9.7	7.24	9.0	5.96	6.31	7.96	2.16	1.0	5.02	4.7
Merged-chr12-32343695-1	chr12	32343595	32343795	+	770.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-35094.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	1.62	4.53	3.42	3.22	7.36	7.84	3.65	3.34	12.98	12.05	9.04	4.07
Merged-chr11-55215335-1	chr11	55215235	55215435	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 2 of 10)	intron (NM_153139, intron 2 of 10)	10995.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	4.04	7.8	2.28	0.8	8.18	0.94	3.32	8.07	6.29	5.02	5.53	1.25
Merged-chr9-9237800-2	chr9	9237703	9237903	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	1210.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	1.62	1.01	1.71	0.8	7.36	5.64	5.98	10.79	18.88	12.05	10.05	4.7
Merged-chr14-61668152-2	chr14	61668063	61668263	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	14210.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.06	8.55	15.97	4.42	12.27	6.9	4.65	8.38	6.1	6.53	6.03	5.01
Merged-chr1-13293499-2	chr1	13293410	13293610	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	78919.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.65	2.77	7.42	12.07	2.45	2.51	10.3	6.62	7.47	7.53	5.02	5.64
Merged-chr19-41997961-1	chr19	41997861	41998061	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	16198.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	3.23	7.04	6.85	3.22	4.91	8.47	2.33	8.16	2.75	0.0	0.0	1.88
Merged-chr14-14974818-1	chr14	14974718	14974918	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195229, intron 29 of 34)	L1_Mus3|LINE|L1	154003.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.63	4.78	1.71	0.8	7.77	21.32	10.96	7.15	2.95	0.5	1.51	0.63
Merged-chr13-42515109-1	chr13	42515009	42515209	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-165690.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.25	3.02	7.42	14.88	5.73	8.78	2.99	13.15	4.52	8.03	14.57	7.21
Merged-chr6-119472893-2	chr6	119472788	119472988	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	MTD|LTR|ERVL-MaLR	-5677.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	7.67	2.77	11.41	2.41	14.73	2.2	13.29	10.65	6.29	10.54	11.56	6.58
Merged-chrX-60331904-1	chrX	60331804	60332004	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	62588.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	3.23	4.78	4.56	6.84	2.45	0.63	6.64	7.04	5.51	4.02	2.51	4.7
Merged-chr5-146811264-1	chr5	146811164	146811364	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16308.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.23	3.02	5.7	4.02	4.5	3.76	7.31	6.73	5.9	14.06	13.57	8.14
Merged-chr4-130821121-2	chr4	130821024	130821224	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28587.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.85	1.51	7.99	10.86	4.5	9.41	5.65	12.48	5.31	4.02	6.03	8.46
Merged-chr9-109921451-1	chr9	109921351	109921551	+	770.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10323.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	2.42	11.32	7.99	1.61	3.27	8.78	2.33	0.5	16.13	10.04	2.01	2.19
Merged-chr5-122285833-2	chr5	122285736	122285936	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1438.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	8.88	6.04	6.85	16.49	9.0	8.15	2.99	8.52	5.11	4.52	11.56	5.01
Merged-chr16-87712207-1	chr16	87712107	87712307	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	13253.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.81	1.51	1.14	2.82	1.64	7.53	1.99	7.18	3.74	6.03	2.51	6.27
Merged-chr1-89753752-2	chr1	89753657	89753857	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 11 of 16)	intron (NM_001037136, intron 11 of 16)	-69865.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	3.23	3.77	16.54	8.85	3.68	1.25	6.31	11.58	6.88	4.02	6.03	3.76
Merged-chr2-151001842-1	chr2	151001742	151001942	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207204, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	7556.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	8.08	5.53	9.13	3.22	8.59	10.66	8.3	8.3	4.92	5.02	10.55	7.21
Merged-chr7-62571897-1	chr7	62571797	62571997	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-107387.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	1.62	1.01	0.0	0.8	1.64	1.25	4.98	5.97	0.39	0.5	3.52	0.63
Merged-chr6-134319745-2	chr6	134319648	134319848	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	-76581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.25	1.76	10.84	8.85	11.86	9.72	28.23	27.9	3.54	0.5	2.51	1.57
Merged-chr5-41337175-1	chr5	41337075	41337275	+	770.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	370516.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	2.52	5.7	1.61	0.0	0.0	0.0	1.49	14.55	6.53	8.04	9.08
Merged-chr16-59499379-1	chr16	59499279	59499479	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174848, intron 16 of 18)	intron (NM_174848, intron 16 of 18)	27604.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	1.21	3.02	3.99	3.22	4.09	3.76	4.32	5.3	2.16	0.5	0.0	0.63
Merged-chr14-30828278-2	chr14	30828172	30828372	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2678.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	12.11	14.34	7.42	10.05	10.23	11.29	4.65	1.68	6.29	15.57	7.03	3.76
Merged-chr17-43376730-1	chr17	43376630	43376830	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357332, intron 1 of 20)	intron (NM_001357332, intron 1 of 20)	-12736.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.63	2.52	2.85	4.02	3.68	1.57	7.64	6.25	2.56	2.51	7.54	4.39
Merged-chr4-139232274-1	chr4	139232174	139232374	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38163.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.63	2.01	2.28	4.83	3.27	7.21	0.33	8.36	5.31	5.02	8.04	4.39
Merged-chr4-105716011-1	chr4	105715911	105716111	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-525202.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	2.02	2.52	5.7	1.61	2.45	0.63	11.96	6.39	4.92	1.0	3.01	4.7
Merged-chr13-94467132-1	chr13	94467032	94467232	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009680, intron 15 of 26)	intron (NM_009680, intron 15 of 26)	108172.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.4	1.26	0.0	0.8	5.32	6.27	6.31	10.43	6.49	4.02	19.6	0.94
Merged-chr16-14387630-1	chr16	14387530	14387730	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	B1_Mus2|SINE|Alu	26072.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.0	0.75	0.0	0.4	6.55	3.14	1.99	6.48	1.97	1.51	1.0	0.31
Merged-chr1-60599069-1	chr1	60598969	60599169	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32304.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	4.04	1.01	3.42	2.82	3.27	5.96	5.31	6.36	2.16	2.01	3.01	0.94
Merged-chr13-24806290-1	chr13	24806190	24806390	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	4633.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.06	6.54	2.28	8.85	6.14	2.82	7.31	5.97	9.83	4.52	13.06	4.39
Merged-chr1-184729955-2	chr1	184729858	184730058	+	769.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008250, exon 3 of 4)	exon (NM_008250, exon 3 of 4)	2535.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	8.48	6.29	1.71	2.82	6.14	6.27	4.98	8.3	12.19	11.05	9.55	10.96
Merged-chr7-16057361-2	chr7	16057268	16057468	+	769.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-14477.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	2.42	5.53	8.56	2.41	9.0	6.27	3.65	11.21	17.51	10.54	12.56	14.1
Merged-chr5-7960333-2	chr5	7960224	7960424	+	769.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054098)	promoter-TSS (NM_054098)	-148.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	8.88	4.53	2.28	5.23	17.18	15.68	15.28	11.94	6.29	7.03	12.06	3.13
Merged-chr1-78674848-3	chr1	78674749	78674949	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028817, intron 2 of 15)	intron (NM_028817, intron 2 of 15)	16409.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	10.5	7.29	6.28	12.07	4.91	12.54	14.28	17.8	10.82	7.03	11.56	8.14
Merged-chr1-191068591-3	chr1	191068483	191068683	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	5562.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	9.29	12.32	3.42	4.02	4.5	8.47	4.98	5.33	20.85	11.05	33.67	12.84
Merged-chr11-82175007-3	chr11	82174904	82175104	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4808.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	10.5	12.32	7.99	11.26	6.14	10.66	2.99	4.77	21.05	18.58	10.05	9.71
Merged-chr7-27651123-3	chr7	27651023	27651223	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2801.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	9.69	10.56	6.85	7.24	13.09	12.54	8.97	12.08	26.16	21.59	12.56	6.58
Merged-chr3-103279131-2	chr3	103279047	103279247	+	769.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053170)	promoter-TSS (NM_053170)	-146.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	10.5	5.28	5.13	2.41	13.5	14.74	7.64	9.06	8.65	7.03	9.04	10.96
Merged-chr8-103940720-2	chr8	103940610	103940810	+	769.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160915.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	2.83	2.77	0.57	4.83	12.27	9.72	9.63	20.72	8.26	15.06	12.56	3.45
Merged-chr14-75829664-3	chr14	75829604	75829804	+	769.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15260.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	10.9	6.79	7.42	7.64	5.73	7.84	0.33	9.67	6.88	9.54	10.05	4.7
Merged-chr5-149284957-3	chr5	149284800	149285000	+	769.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009663, intron 3 of 4)	MTD|LTR|ERVL-MaLR	19896.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	8.48	4.78	10.84	11.66	17.59	13.8	11.96	10.04	10.82	7.53	9.04	8.77
Merged-chr6-47781522-6	chr6	47781403	47781603	+	769.819458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22149.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	2.83	1.51	8.56	2.01	0.82	4.7	1.33	1.29	7.28	3.01	5.02	3.45
Merged-chr8-70693822-3	chr8	70693723	70693923	+	769.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3916.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	9.29	7.8	1.14	4.83	19.23	15.05	7.97	19.77	9.44	15.06	24.62	12.84
Merged-chr10-95880345-6	chr10	95880255	95880455	+	769.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60308.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.44	2.26	2.85	4.42	4.91	4.39	8.64	5.24	4.33	10.54	6.53	4.7
Merged-chr4-9060363-3	chr4	9060264	9060464	+	769.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208929.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	8.08	9.06	10.84	7.64	12.27	10.66	12.62	24.95	8.26	12.55	25.12	14.41
Merged-chr4-89128166-3	chr4	89128043	89128243	+	769.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151607)	promoter-TSS (NR_151607)	83.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	12.92	6.79	5.13	8.85	15.14	12.86	14.62	12.84	8.06	4.52	10.55	5.95
Merged-chr3-149436594-3	chr3	149436491	149436691	+	769.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161854.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	6.06	5.03	5.13	14.08	18.41	16.93	12.95	22.77	13.18	12.05	18.59	12.53
Merged-chr5-90862121-2	chr5	90862024	90862224	+	769.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29121.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	2.42	3.02	7.42	3.62	18.82	6.9	7.97	17.52	8.46	3.01	9.04	10.34
Merged-chr9-116060860-2	chr9	116060761	116060961	+	769.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	114502.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	16.15	5.03	9.7	7.64	13.5	6.59	8.64	6.14	20.46	5.02	14.07	5.33
Merged-chr18-69655692-2	chr18	69655601	69655801	+	769.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 14 of 19)	intron (NM_001361128, intron 14 of 19)	-269858.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	9.69	4.53	2.28	14.48	15.96	19.13	10.63	13.18	3.15	7.53	8.54	2.19
Merged-chr13-76262639-2	chr13	76262538	76262738	+	769.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-122323.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	8.08	7.04	13.12	14.08	8.18	18.5	9.63	11.3	0.59	0.0	1.51	0.63
Merged-chr2-84626545-2	chr2	84626448	84626648	+	769.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22932.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.67	5.79	7.42	5.23	12.27	16.93	30.23	14.02	16.72	8.03	9.04	3.76
Merged-chr2-77170572-3	chr2	77170458	77170658	+	769.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025576)	promoter-TSS (NM_001025576)	77.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	6.06	10.06	9.7	7.64	12.27	10.35	11.96	12.67	9.44	9.04	9.55	10.65
Merged-chr9-44479825-3	chr9	44479726	44479926	+	769.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2999.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	12.11	9.31	2.85	3.62	7.77	10.98	2.33	5.27	14.16	20.59	15.07	6.58
Merged-chr1-84881710-3	chr1	84881620	84881820	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025386, intron 2 of 3)	RMER15|LTR|ERVL	41879.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	4.04	13.58	9.13	4.02	4.5	6.59	6.31	12.79	29.11	24.1	40.2	22.56
Merged-chr16-43953196-3	chr16	43953089	43953289	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	MTD|LTR|ERVL-MaLR	25861.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	12.11	4.78	21.68	8.85	8.59	7.53	13.95	10.12	12.78	5.52	18.09	6.89
Merged-chr5-103756396-3	chr5	103756296	103756496	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	1823.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.85	8.05	6.85	6.03	11.05	9.72	7.97	13.09	12.98	7.03	8.54	10.65
Merged-chr18-57675274-3	chr18	57675170	57675370	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-36685.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	4.44	5.53	6.85	8.85	7.36	9.72	12.29	13.21	13.37	9.54	25.63	6.89
Merged-chr11-119089389-3	chr11	119089362	119089562	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3225.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	5.25	4.02	14.83	3.62	9.0	14.42	2.33	5.02	4.33	7.53	10.55	3.45
Merged-chr7-100501364-3	chr7	100501323	100501523	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	8065.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	10.09	10.06	3.99	9.25	10.23	7.53	7.64	7.26	1.38	10.04	8.54	3.45
Merged-chr6-115994573-1	chr6	115994473	115994673	+	769.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	432.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	9.29	3.77	3.99	5.63	6.14	4.39	4.98	6.53	5.7	6.03	10.05	7.52
Merged-chr14-56876001-3	chr14	56875788	56875988	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	-10715.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	2.02	4.02	3.99	8.45	11.45	7.53	7.31	2.38	8.46	5.52	6.03	5.64
Merged-chr9-53669997-2	chr9	53669902	53670102	+	769.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2495.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	6.46	8.55	5.7	5.63	6.55	10.03	9.97	11.52	11.41	6.03	8.04	7.52
Merged-chr4-102513888-2	chr4	102513753	102513953	+	769.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-56207.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.44	9.06	16.54	5.23	0.0	1.25	0.0	2.44	7.28	4.52	10.55	3.76
Merged-chr12-35054603-3	chr12	35054516	35054716	+	769.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	7427.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	8.48	5.03	6.28	6.84	12.27	6.59	2.99	11.66	11.01	18.08	18.59	18.17
Merged-chr11-51349819-3	chr11	51349733	51349933	+	769.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	59913.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	13.33	7.55	4.56	13.27	13.91	10.03	7.31	13.12	9.83	12.05	19.09	5.33
Merged-chr7-30873280-3	chr7	30873188	30873388	+	769.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009845, exon 5 of 14)	exon (NM_009845, exon 5 of 14)	5740.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	2.42	7.04	13.12	9.25	11.86	5.33	1.99	10.26	11.41	6.53	11.56	8.46
Merged-chr6-134144887-2	chr6	134144792	134144992	+	769.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	109192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	13.33	3.02	6.85	6.03	16.36	14.74	5.98	10.91	8.06	5.52	9.04	7.52
Merged-chr6-72868959-2	chr6	72868849	72869049	+	769.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	30343.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	5.65	5.79	18.25	8.85	9.0	5.96	7.31	6.64	7.67	5.52	8.54	5.64
Merged-chr7-100465735-3	chr7	100465578	100465778	+	769.5740969999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-7313.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.04	7.04	3.99	7.24	9.82	4.39	6.98	8.16	3.93	5.02	8.04	2.51
Merged-chr12-110771076-3	chr12	110770957	110771157	+	769.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	33125.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	10.09	9.81	3.99	12.47	10.23	6.27	4.32	8.44	13.57	6.53	25.12	8.14
Merged-chr8-117294624-3	chr8	117294501	117294701	+	769.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37582.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	11.71	7.55	14.83	11.26	11.86	14.11	9.3	13.4	12.78	11.05	14.57	7.83
Merged-chr7-84151376-3	chr7	84151231	84151431	+	769.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	562.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.04	7.8	4.56	4.02	6.55	1.88	11.29	9.39	9.05	12.55	11.05	10.34
Merged-chr3-107864119-3	chr3	107864038	107864238	+	769.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13092.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	15.75	9.81	7.42	6.44	12.27	13.17	4.98	11.16	19.67	26.11	18.09	8.77
Merged-chr8-124232009-4	chr8	124231879	124232079	+	769.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	CpG	585.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	8.08	4.53	6.85	6.44	9.0	6.9	5.65	5.97	6.1	8.54	9.04	7.52
Merged-chr10-50910569-1	chr10	50910469	50910669	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011376, exon 8 of 11)	exon (NM_011376, exon 8 of 11)	14918.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	2.83	3.02	5.7	2.01	2.86	6.27	7.31	6.87	1.97	1.0	2.51	2.19
Merged-chr8-39309440-2	chr8	39309374	39309574	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	11494.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	4.85	7.04	7.99	16.09	2.45	7.21	5.65	10.21	0.2	0.0	0.0	0.0
Merged-chr1-152720798-2	chr1	152720701	152720901	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-29750.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	7.27	3.77	3.99	0.8	11.05	3.14	5.98	8.94	12.0	5.52	16.58	5.01
Merged-chr1-112451762-1	chr1	112451662	112451862	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-586844.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	4.04	1.51	4.56	3.22	8.18	6.59	3.99	7.04	2.36	2.51	4.52	3.13
Merged-chr13-49194717-1	chr13	49194617	49194817	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013610, intron 2 of 3)	intron (NM_013610, intron 2 of 3)	7170.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.65	4.53	5.7	2.41	7.36	9.41	9.3	12.9	5.51	3.01	3.52	3.76
Merged-chr1-77462026-1	chr1	77461926	77462126	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	34742.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.42	3.52	4.56	2.41	7.77	1.88	5.31	5.94	4.33	4.52	2.51	2.51
Merged-chr13-107856243-2	chr13	107856145	107856345	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33819.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	5.65	5.28	12.55	7.24	6.14	7.84	2.99	12.67	11.21	2.01	15.58	9.08
Merged-chr16-11026038-1	chr16	11025938	11026138	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17140.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	5.65	4.28	3.42	8.85	8.18	5.96	2.33	10.29	2.16	6.03	7.03	1.25
Merged-chr2-122773024-1	chr2	122772924	122773124	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	1311.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	2.42	5.03	4.56	2.01	2.45	6.27	10.63	5.61	6.1	1.51	6.03	4.07
Merged-chr11-53436512-3	chr11	53436416	53436616	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008110, intron 1 of 1)	intron (NM_008110, intron 1 of 1)	3230.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	7.67	7.55	7.42	7.24	7.36	14.11	3.99	7.88	5.51	14.56	11.05	11.59
Merged-chrX-103553431-1	chrX	103553331	103553531	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7931.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	4.85	2.52	3.99	9.65	2.86	8.15	6.31	7.15	3.74	5.52	4.02	3.13
Merged-chr10-79856017-2	chr10	79855907	79856107	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077363, intron 1 of 13)	intron (NM_001077363, intron 1 of 13)	-1036.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	3.63	17.36	3.42	6.44	11.86	11.92	5.98	5.16	13.96	12.55	11.05	6.58
Merged-chr12-4450217-1	chr12	4450117	4450317	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	26965.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.85	3.02	2.28	12.87	7.36	1.88	8.3	10.12	4.33	4.02	5.53	3.76
Merged-chr1-181861303-2	chr1	181861179	181861379	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18878.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	11.31	11.82	9.7	8.85	11.05	10.66	1.66	3.14	13.18	4.02	5.02	8.14
Merged-chr9-66114117-2	chr9	66114007	66114207	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10779.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	6.46	18.61	7.99	2.82	7.77	13.48	13.29	5.94	10.23	7.03	14.57	6.58
Merged-chr17-87256474-2	chr17	87256378	87256578	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176808, intron 4 of 4)	intron (NM_176808, intron 4 of 4)	9469.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.46	5.03	13.69	17.29	11.05	9.41	17.61	19.46	8.46	6.03	14.07	4.7
Merged-chr13-93989448-3	chr13	93989324	93989524	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68372.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	8.08	7.55	7.99	8.85	6.55	13.17	10.96	3.36	13.57	13.05	22.61	13.47
Merged-chr2-145794706-3	chr2	145794604	145794804	+	769.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	8588.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	9.29	9.56	1.71	6.44	7.36	10.03	8.64	10.23	13.18	22.09	21.1	7.83
Merged-chr5-114826435-3	chr5	114826371	114826571	+	769.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3003.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	7.27	8.55	2.85	7.24	7.77	9.72	4.98	7.26	9.64	11.05	9.55	8.14
Merged-chr18-60816129-4	chr18	60815992	60816192	+	769.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001198984, exon 23 of 26)	exon (NM_001198984, exon 23 of 26)	4016.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	13.73	26.16	6.85	7.24	7.36	8.47	5.31	1.96	6.1	7.03	4.02	1.88
Merged-chr19-45805131-3	chr19	45805038	45805238	+	769.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7153.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	18.57	4.78	12.55	8.85	7.77	12.86	2.33	7.77	13.96	14.56	14.07	12.53
Merged-chr14-120480658-2	chr14	120480564	120480764	+	769.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	2203.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.65	7.29	4.56	5.23	13.09	8.78	12.29	15.34	4.13	7.53	8.04	5.95
Merged-chr8-56865736-1	chr8	56865636	56865836	+	769.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	314602.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.04	6.79	2.85	6.84	3.27	4.7	4.32	6.93	1.38	4.02	4.02	3.45
Merged-chr3-84942380-1	chr3	84942280	84942480	+	769.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-9831.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.42	6.79	6.85	12.07	6.14	8.15	9.3	8.24	7.87	0.5	10.05	8.77
Merged-chr12-112761621-2	chr12	112761521	112761721	+	769.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	966.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	5.65	10.06	10.84	4.83	5.73	10.66	16.61	6.03	3.54	7.03	3.01	10.96
Merged-chr6-129200111-3	chr6	129200001	129200201	+	769.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	19486.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	14.54	17.1	20.54	12.47	9.41	29.16	19.93	8.92	10.03	5.52	9.04	11.28
Merged-chr3-22034756-2	chr3	22034657	22034857	+	769.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41895.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.85	4.02	5.7	7.24	11.05	6.9	4.65	8.36	13.96	15.57	24.12	5.64
Merged-chr9-67424251-1	chr9	67424151	67424351	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	135452.0	NM_001081242	70549.0	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.81	4.28	2.85	3.22	4.91	16.31	7.31	4.29	1.18	3.01	3.52	1.88
Merged-chr1-152556221-1	chr1	152556121	152556321	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68996.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.06	5.53	2.85	5.23	5.32	6.59	4.98	6.45	4.13	10.04	3.01	6.58
Merged-chr12-102284403-1	chr12	102284303	102284503	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	762.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	7.27	3.77	1.71	1.61	15.96	13.17	4.98	2.66	9.64	5.02	1.51	5.64
Merged-chr7-139303469-3	chr7	139303359	139303559	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54977.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.85	6.79	8.56	12.47	10.64	13.48	4.65	7.01	5.11	13.56	16.08	6.89
Merged-chr3-89964475-3	chr3	89964325	89964525	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	1.62	6.29	3.99	6.44	4.5	6.9	4.98	5.36	10.03	12.55	3.52	5.95
Merged-chr10-30777930-3	chr10	30777846	30778046	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	25380.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	11.71	12.32	9.13	7.64	10.23	26.97	18.6	12.03	8.65	12.05	5.02	3.76
Merged-chr18-26022843-1	chr18	26022743	26022943	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-268686.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.81	4.78	3.42	4.02	6.14	7.21	6.31	8.75	3.15	2.01	2.01	2.19
Merged-chrX-100774475-3	chrX	100774374	100774574	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177779)	promoter-TSS (NM_001177779)	-21.0	NM_001177779	53310.0	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs large MAGUK scaffold protein 3	protein-coding	4.04	15.09	3.42	11.26	13.5	10.03	3.32	6.48	8.26	8.03	4.52	5.01
Merged-chr9-99112279-3	chr9	99112181	99112381	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	27930.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	9.29	7.55	14.83	13.27	11.05	10.03	3.99	6.9	12.19	15.57	14.57	4.39
Merged-chr19-32292206-1	chr19	32292106	32292306	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	57110.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.23	0.75	9.13	5.63	11.86	7.21	7.31	6.36	3.54	7.03	5.02	5.01
Merged-chr7-109646689-3	chr7	109646598	109646798	+	769.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2a|DNA|hAT-Charlie	-29551.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	8.48	9.81	4.56	12.87	5.73	9.09	4.65	10.15	12.0	8.54	11.05	5.01
Merged-chr14-27444000-3	chr14	27443901	27444101	+	769.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028945, intron 6 of 23)	Lx7|LINE|L1	15167.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	14.54	8.55	11.41	23.33	12.27	8.78	6.64	18.39	9.44	11.05	21.61	14.41
Merged-chr13-96455539-2	chr13	96455415	96455615	+	769.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042714, intron 2 of 13)	intron (NM_001042714, intron 2 of 13)	15645.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	8.08	8.8	3.42	6.03	7.36	14.74	2.66	7.43	6.69	3.01	4.52	2.51
Merged-chr6-7967590-2	chr6	7967488	7967688	+	769.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122364.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	6.06	10.82	4.56	12.47	2.86	6.59	6.64	9.17	7.87	6.03	4.52	4.7
Merged-chr19-33227201-2	chr19	33227094	33227294	+	769.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	70082.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.4	5.53	12.55	9.65	8.18	10.35	4.65	11.5	14.16	7.03	13.06	6.58
Merged-chr3-31138655-2	chr3	31138566	31138766	+	769.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11254.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	7.27	5.53	6.28	5.23	6.14	11.29	5.98	8.38	24.98	11.05	12.06	10.34
Merged-chr19-16222695-2	chr19	16222553	16222753	+	769.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	58555.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	4.44	5.79	7.99	10.46	4.91	10.03	3.99	4.09	7.08	5.52	3.52	1.25
Merged-chr6-114404337-3	chr6	114404222	114404422	+	769.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252642, intron 1 of 1)	intron (NM_001252642, intron 1 of 1)	656.0	NM_001252643	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	6.06	10.82	10.27	14.88	8.18	12.86	12.29	16.99	10.23	5.52	11.56	8.77
Merged-chr13-58214883-3	chr13	58214792	58214992	+	769.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	761.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	11.71	7.8	7.99	9.65	9.0	7.84	2.99	9.39	24.59	10.04	9.04	8.77
Merged-chr2-158189642-2	chr2	158189557	158189757	+	769.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001131021, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-2351.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	6.46	4.53	18.25	6.03	6.55	16.31	5.65	6.22	11.8	7.53	17.08	10.34
Merged-chr2-34770277-3	chr2	34770173	34770373	+	769.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1817.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	12.11	9.81	5.7	5.23	5.73	21.64	5.31	8.1	10.03	10.04	13.06	6.89
Merged-chr15-80899462-2	chr15	80899347	80899547	+	769.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177124, intron 11 of 21)	intron (NM_177124, intron 11 of 21)	-40592.0	NR_039573	100628612.0		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	11.31	9.31	10.27	4.83	5.73	8.15	3.99	2.66	21.83	7.03	13.57	5.01
Merged-chr8-25187646-2	chr8	25187555	25187755	+	769.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	13887.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	6.46	4.78	4.56	5.63	10.64	15.37	6.31	20.92	9.05	6.53	12.56	8.14
Merged-chr9-41228887-3	chr9	41228811	41229011	+	769.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22756.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	8.88	9.56	9.7	11.26	13.09	13.17	14.95	11.92	15.34	10.54	13.57	5.33
Merged-chr8-22860259-2	chr8	22860171	22860371	+	769.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 1 of 17)	CpG	732.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.25	12.07	9.13	10.05	6.14	8.47	9.97	7.29	8.65	10.54	6.03	5.64
Merged-chr11-20847720-3	chr11	20847635	20847835	+	769.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16627.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.23	4.28	10.84	22.12	4.09	13.17	6.98	15.45	14.36	7.53	9.55	12.84
Merged-chr18-36514152-4	chr18	36514091	36514291	+	769.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	1614.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	9.29	9.81	7.99	8.85	7.36	8.47	8.64	6.9	13.96	14.56	17.08	11.9
Merged-chr4-128621552-3	chr4	128621461	128621661	+	769.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2942.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	10.5	7.55	17.68	15.69	9.82	15.05	4.32	16.65	10.23	8.03	17.59	7.83
Merged-chr2-71047480-1	chr2	71047380	71047580	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	8126.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.23	3.52	3.99	2.82	8.18	2.51	2.66	6.59	4.72	2.51	9.04	8.14
Merged-chr10-115170687-1	chr10	115170587	115170787	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173391, intron 5 of 10)	intron (NM_173391, intron 5 of 10)	14335.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	1.62	2.52	4.56	3.22	2.45	5.64	4.98	6.95	1.97	0.5	0.0	0.31
Merged-chr15-78355711-2	chr15	78355604	78355804	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7105.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	5.65	5.53	6.28	3.22	11.86	9.09	4.32	9.42	14.75	12.05	13.06	6.89
Merged-chr9-15060862-1	chr9	15060762	15060962	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001164797, exon 16 of 20)	exon (NM_001164797, exon 16 of 20)	-15384.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.81	2.01	0.0	3.22	0.82	8.15	3.32	7.65	2.36	3.01	7.54	4.7
Merged-chr1-155018662-1	chr1	155018562	155018762	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	64602.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.65	2.26	10.84	2.82	2.05	6.9	5.98	9.25	2.75	2.51	4.52	5.01
Merged-chr17-10724242-1	chr17	10724142	10724342	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115949.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.4	1.01	2.28	2.41	3.27	3.45	10.3	6.14	2.36	2.01	3.52	4.7
Merged-chr16-43841486-1	chr16	43841386	43841586	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48190.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0.81	2.26	7.99	2.41	4.91	7.84	6.64	9.73	10.03	6.53	8.04	2.82
Merged-chr15-25624476-3	chr15	25624372	25624572	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	1922.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	7.67	8.55	1.71	6.44	11.05	9.41	4.98	6.95	9.44	8.03	15.58	7.52
Merged-chr16-91694896-3	chr16	91694792	91694992	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 8 of 11)	intron (NM_026994, intron 8 of 11)	5994.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	8.48	9.06	13.12	2.82	6.14	8.15	5.98	2.41	17.7	23.1	21.1	5.95
Merged-chr7-80250024-1	chr7	80249924	80250124	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177765, intron 3 of 14)	intron (NM_177765, intron 3 of 14)	3648.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	8.08	4.02	3.99	2.01	2.45	3.76	6.64	5.92	0.0	0.0	0.0	0.63
Merged-chr2-130295745-2	chr2	130295632	130295832	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-207.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	9.29	6.79	7.42	8.04	10.23	10.66	11.29	11.89	10.23	8.54	2.51	6.89
Merged-chr6-89430962-1	chr6	89430862	89431062	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	-68349.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.04	2.26	4.56	8.85	12.68	5.02	5.65	10.46	9.64	5.02	8.04	4.39
Merged-chr19-24984562-1	chr19	24984462	24984662	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14967.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.63	2.52	1.71	9.25	7.36	4.39	8.64	6.67	1.18	4.02	6.53	6.27
Merged-chr9-65787582-1	chr9	65787482	65787682	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	39982.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	2.02	2.01	15.4	5.63	3.27	3.76	5.65	7.32	6.69	2.01	0.0	0.63
Merged-chr7-142384457-3	chr7	142384382	142384582	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3388.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	10.9	4.78	13.12	8.85	3.27	5.02	10.63	12.14	8.06	8.03	7.54	10.34
Merged-chrX-167104465-2	chrX	167104368	167104568	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34098.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	8.88	4.28	4.56	7.24	10.64	3.76	1.99	10.18	8.46	1.51	6.03	5.95
Merged-chr1-164080109-1	chr1	164080009	164080209	+	769.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011346, exon 9 of 9)	3' UTR (NM_011346, exon 9 of 9)	18033.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	8.08	15.59	2.28	3.22	2.05	12.23	2.33	2.64	13.77	10.54	10.55	3.13
Merged-chr9-56258056-1	chr9	56257956	56258156	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-96986.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	2.83	1.26	1.14	0.0	7.77	4.7	2.66	6.14	7.47	2.51	13.57	1.57
Merged-chr10-8934085-3	chr10	8933978	8934178	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48008.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	10.5	9.81	1.14	8.85	13.09	10.35	4.65	6.59	19.28	31.13	20.1	14.1
Merged-chr5-143594423-1	chr5	143594323	143594523	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28024.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	3.27	3.42	2.41	4.91	7.21	1.99	5.64	8.46	1.0	5.53	6.27
Merged-chr2-5421852-1	chr2	5421752	5421952	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	MTD|LTR|ERVL-MaLR	42462.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	2.42	2.01	5.7	1.21	4.5	10.66	10.63	6.34	5.11	6.53	5.02	3.45
Merged-chr8-25102546-3	chr8	25102422	25102622	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031257)	promoter-TSS (NM_031257)	343.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	10.9	11.32	3.42	6.44	6.14	12.54	4.98	10.93	11.8	8.03	5.02	12.84
Merged-chr14-54239224-2	chr14	54239128	54239328	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010015)	TTS (NM_010015)	14701.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	10.5	10.56	5.7	7.64	6.95	9.09	3.32	5.97	7.28	4.02	9.55	5.33
Merged-chr6-140722918-1	chr6	140722818	140723018	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.25	0.0	1.61	1.64	0.63	7.31	2.33	0.39	0.5	0.0	0.31
Merged-chr17-44734674-1	chr17	44734574	44734774	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073392, intron 2 of 7)	CpG	1502.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	3.23	5.79	5.13	0.0	4.5	11.29	11.29	9.08	1.77	3.51	8.04	2.82
Merged-chr12-104223848-1	chr12	104223748	104223948	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	9215.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	4.04	3.52	13.12	4.02	4.09	6.27	2.66	10.01	4.33	1.0	5.53	5.33
Merged-chr10-93521550-1	chr10	93521450	93521650	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	18483.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	2.02	3.27	0.0	1.21	7.36	5.33	6.98	8.13	0.0	0.5	0.0	0.31
Merged-chr3-99981221-1	chr3	99981121	99981321	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028892, intron 4 of 48)	GSAT_MM|Satellite|Satellite	95804.0	NM_028892	74362.0	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	10.09	6.79	7.99	6.03	16.77	7.21	11.96	22.21	2.36	1.51	0.0	5.33
Merged-chr6-128630244-1	chr6	128630144	128630344	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7310.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	4.44	5.53	2.28	3.22	4.91	6.9	7.31	6.53	7.87	7.53	13.57	5.64
Merged-chr7-145188019-1	chr7	145187919	145188119	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 20 of 22)	intron (NR_132643, intron 20 of 22)	20100.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	2.01	3.42	5.63	7.36	9.09	7.64	12.53	0.98	3.01	4.02	3.13
Merged-chr1-7114077-3	chr1	7113976	7114176	+	768.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	MLTR14|LTR|ERV1	25156.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.08	5.79	13.12	6.03	15.14	14.11	6.31	17.05	16.13	14.56	12.06	5.95
Merged-chr5-114702771-3	chr5	114702674	114702874	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5005.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	12.11	5.28	16.54	6.44	10.23	7.53	12.95	17.41	11.41	8.03	13.57	9.08
Merged-chr6-125684807-3	chr6	125684715	125684915	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-5604.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	22.61	15.09	15.4	8.85	9.82	12.23	4.65	9.0	11.8	4.52	9.04	8.14
Merged-chr16-91840284-3	chr16	91840185	91840385	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	91345.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	18.57	8.05	17.11	9.25	4.09	5.96	14.62	12.11	7.47	10.04	12.06	4.39
Merged-chr16-20227731-3	chr16	20227628	20227828	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001145930, exon 28 of 31)	exon (NM_001145930, exon 28 of 31)	13630.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	14.13	7.04	16.54	18.1	6.14	9.72	4.65	12.22	11.8	17.07	9.04	10.02
Merged-chr2-128312238-3	chr2	128312181	128312381	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028589, intron 2 of 2)	intron (NR_028589, intron 2 of 2)	117070.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.52	9.31	13.69	5.63	7.77	12.54	9.3	11.41	9.83	3.51	1.0	10.96
Merged-chr3-103805384-2	chr3	103805286	103805486	+	768.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2257.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	7.27	3.52	7.42	5.23	5.73	7.53	13.62	11.8	10.03	10.54	12.56	5.01
Merged-chrX-93886149-2	chrX	93886077	93886277	+	768.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-54082.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	6.06	2.77	5.13	0.4	8.59	6.9	6.98	2.61	19.87	18.08	15.07	4.39
Merged-chr5-92127466-2	chr5	92127367	92127567	+	768.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10258.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.04	5.03	2.85	2.82	13.09	7.21	13.95	7.88	8.06	5.52	5.02	6.27
Merged-chr19-21271408-3	chr19	21271318	21271518	+	768.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-860.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	10.9	12.32	13.12	5.63	15.14	6.9	13.29	12.45	8.06	9.54	11.05	19.11
Merged-chr1-64052196-3	chr1	64052097	64052297	+	768.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-9696.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	6.86	1.76	8.56	10.86	18.41	11.29	17.61	25.68	3.15	5.52	10.05	8.14
Merged-chr12-81845258-3	chr12	81845166	81845366	+	768.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14764.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	9.29	7.8	6.85	2.41	13.5	16.93	18.93	13.09	6.88	11.05	14.07	9.4
Merged-chr11-94689169-2	chr11	94689060	94689260	+	768.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-11667.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	6.46	4.53	17.11	6.84	12.68	9.09	7.31	7.65	11.41	4.02	13.06	7.83
Merged-chr3-115643090-4	chr3	115642981	115643181	+	768.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	71974.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.21	6.54	1.71	10.05	8.59	13.48	14.28	15.64	7.87	5.52	18.59	8.14
Merged-chr2-27769307-2	chr2	27769162	27769362	+	768.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58679.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	11.71	13.58	5.13	12.07	6.14	21.64	5.98	2.21	4.72	9.04	6.03	5.64
Merged-chr4-114917218-2	chr4	114917108	114917308	+	768.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030721, intron 3 of 3)	intron (NR_030721, intron 3 of 3)	7919.0	NR_030721	100040736.0	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	7.27	4.78	0.57	8.85	7.77	6.59	5.98	7.37	10.03	7.53	10.55	5.33
Merged-chr10-94358350-2	chr10	94358271	94358471	+	768.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	46422.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.08	8.8	0.0	7.24	3.27	10.03	2.99	6.06	3.54	9.54	3.52	9.08
Merged-chr13-45966712-3	chr13	45966618	45966818	+	768.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1727.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	16.96	10.31	5.13	10.05	5.32	11.6	5.65	6.36	15.54	12.55	23.11	7.21
Merged-chr7-142395156-3	chr7	142395050	142395250	+	768.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-7280.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	11.31	7.55	13.12	8.45	7.77	3.14	5.65	12.17	6.69	5.52	14.07	13.47
Merged-chr12-44171626-1	chr12	44171526	44171726	+	768.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38442.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.81	1.51	1.14	2.01	2.45	0.94	3.32	5.3	9.44	15.06	21.1	16.29
Merged-chr2-34775922-4	chr2	34775778	34775978	+	768.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022310, exon 8 of 8)	exon (NM_022310, exon 8 of 8)	3788.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	2.83	3.52	1.71	9.25	1.23	7.21	4.65	2.97	10.62	3.01	2.01	4.7
Merged-chr7-66323455-3	chr7	66323356	66323556	+	768.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	58268.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	7.67	9.56	25.1	12.07	12.27	11.6	12.95	15.17	8.85	11.05	7.03	5.33
Merged-chr15-73000030-3	chr15	72999932	73000132	+	768.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_180662, exon 8 of 22)	exon (NM_180662, exon 8 of 22)	55780.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	9.69	6.79	2.28	3.22	10.23	19.13	6.64	4.68	12.59	13.05	22.61	5.33
Merged-chr17-4969855-1	chr17	4969755	4969955	+	768.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25219.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	5.65	6.29	3.99	4.02	5.32	9.09	16.94	9.34	7.67	8.54	13.06	3.13
Merged-chr7-101546849-2	chr7	101546748	101546948	+	768.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8954.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.25	3.27	8.56	4.02	11.45	19.76	3.99	22.74	9.05	4.02	7.54	7.52
Merged-chr8-94909111-3	chr8	94908980	94909180	+	768.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033533, intron 4 of 8)	intron (NM_001033533, intron 4 of 8)	9018.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	9.29	5.53	3.42	2.01	9.0	8.78	4.98	4.32	6.49	14.56	19.09	10.34
Merged-chr15-81393144-3	chr15	81393024	81393224	+	768.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6570.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	10.09	9.31	11.98	9.25	8.59	8.47	8.97	8.19	11.8	12.05	13.57	9.71
Merged-chr6-7733284-3	chr6	7733180	7733380	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-40098.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	9.29	23.39	9.7	9.25	11.45	12.86	8.64	11.83	18.69	11.05	19.09	8.77
Merged-chr5-53405195-1	chr5	53405095	53405295	+	768.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138089.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	2.42	3.02	4.56	6.44	2.86	4.7	1.33	6.42	13.18	10.04	9.04	9.08
Merged-chr18-62232808-3	chr18	62232702	62232902	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52702.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	9.29	2.77	7.42	2.41	9.0	5.96	2.66	1.85	16.72	34.14	20.1	12.22
Merged-chr5-137746547-3	chr5	137746493	137746693	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023910, intron 1 of 4)	intron (NM_023910, intron 1 of 4)	624.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	6.46	7.29	12.55	9.25	6.95	8.15	12.29	3.73	12.19	7.53	4.52	8.46
Merged-chr3-145963751-1	chr3	145963651	145963851	+	768.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24119.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	1.62	6.79	0.0	1.61	10.23	2.82	9.63	6.64	2.95	4.52	4.52	5.33
Merged-chr5-66149043-3	chr5	66148951	66149151	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	1927.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.29	9.31	2.85	6.03	14.32	16.93	4.98	9.36	7.47	6.53	14.07	7.52
Merged-chr5-138442470-3	chr5	138442361	138442561	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028130, intron 1 of 4)	intron (NM_028130, intron 1 of 4)	985.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	9.29	7.55	4.56	16.09	11.86	5.02	10.96	11.24	9.24	3.01	8.54	9.71
Merged-chr11-69689847-3	chr11	69689758	69689958	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-4304.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	13.33	15.85	10.27	7.24	5.73	4.08	15.28	6.7	3.34	2.51	5.02	4.7
Merged-chr2-167798136-2	chr2	167798027	167798227	+	768.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106950.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.63	2.52	7.99	2.82	6.14	5.02	7.64	7.15	7.47	4.52	9.55	7.83
Merged-chr6-129398418-2	chr6	129398325	129398525	+	768.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	1128.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	4.85	8.8	4.56	5.23	3.27	10.66	4.98	5.83	8.65	4.02	7.54	11.9
Merged-chr18-76160990-3	chr18	76160909	76161109	+	768.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9543.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	7.27	10.06	3.42	10.46	4.09	14.74	4.65	12.2	27.34	14.56	35.17	19.42
Merged-chr1-136132040-3	chr1	136131926	136132126	+	768.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	636.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	4.04	8.55	2.28	8.85	6.55	6.9	8.64	7.82	11.01	7.53	15.07	5.01
Merged-chr1-74125394-3	chr1	74125297	74125497	+	768.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-144.0	NM_001170641	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	9.69	8.55	7.99	8.85	18.41	18.81	1.66	10.71	15.14	4.52	11.56	6.58
Merged-chr4-13099055-1	chr4	13098955	13099155	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	192218.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	4.44	4.28	0.57	0.8	5.73	2.2	5.31	7.54	0.59	2.01	3.52	4.39
Merged-chr1-165717255-1	chr1	165717155	165717355	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	-9161.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.63	3.02	0.57	4.02	2.05	2.82	2.99	4.68	2.56	2.51	4.02	3.76
Merged-chr14-52014033-2	chr14	52013947	52014147	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027248, intron 1 of 4)	intron (NM_027248, intron 1 of 4)	511.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	4.04	6.54	5.7	5.63	13.91	6.27	7.64	10.37	7.87	2.51	7.54	6.58
Merged-chr18-12760950-2	chr18	12760854	12761054	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19599.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	5.65	3.02	4.56	7.64	11.05	2.51	9.3	5.24	16.13	5.02	12.06	7.21
Merged-chr1-135523263-3	chr1	135523152	135523352	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	ORR1E|LTR|ERVL-MaLR	62103.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	4.85	6.04	15.4	4.83	2.45	7.53	2.33	6.95	13.77	17.57	14.57	10.02
Merged-chr5-99216149-4	chr5	99216111	99216311	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36716.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.48	6.04	2.28	3.22	6.95	4.39	3.99	5.5	15.14	12.55	8.04	4.07
Merged-chr7-101214007-1	chr7	101213907	101214107	+	768.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	88081.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	1.62	3.02	3.42	2.41	2.86	8.15	6.98	1.35	14.55	8.03	14.57	5.64
Merged-chr3-107357035-1	chr3	107356935	107357135	+	768.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23746.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	4.04	5.03	6.85	1.21	10.64	9.41	8.64	4.4	11.41	5.52	10.05	9.71
Merged-chr10-19551796-3	chr10	19551689	19551889	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40160.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	14.13	10.06	10.84	3.62	16.77	12.86	9.63	16.29	15.54	13.05	12.56	7.52
Merged-chr14-70958996-3	chr14	70958902	70959102	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	L1_Rod|LINE|L1	68895.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	12.11	4.53	9.13	12.07	6.95	6.27	6.31	14.61	13.37	7.03	16.58	6.27
Merged-chr9-56076071-3	chr9	56075974	56076174	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13902.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	8.88	11.57	13.69	20.11	8.59	11.29	10.63	13.09	13.57	7.53	18.59	19.74
Merged-chr12-76373312-2	chr12	76373237	76373437	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	3071.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	15.34	6.29	6.85	8.85	9.82	10.03	8.3	4.35	10.42	7.53	6.53	4.39
Merged-chr15-99365137-1	chr15	99365037	99365237	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	5345.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	8.08	11.07	6.85	1.61	7.77	8.15	0.66	10.85	10.82	3.51	3.01	3.13
Merged-chr1-72019068-1	chr1	72018968	72019168	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13873.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.81	1.01	0.0	0.8	5.73	2.82	6.64	7.51	4.52	3.51	6.03	4.07
Merged-chr2-38956100-1	chr2	38956000	38956200	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172854, intron 6 of 7)	intron (NM_172854, intron 6 of 7)	24120.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	2.02	2.01	3.42	1.61	6.55	4.08	5.98	5.58	8.85	5.52	5.02	4.07
Merged-chr18-5131864-1	chr18	5131764	5131964	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	33867.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	2.42	2.01	1.14	7.24	10.64	1.57	3.32	8.72	5.11	8.03	3.52	0.63
Merged-chr11-49846103-2	chr11	49846005	49846205	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-646.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	4.44	5.79	13.12	4.42	12.68	4.08	5.98	4.63	13.96	21.09	16.08	9.71
Merged-chr14-31669338-3	chr14	31669230	31669430	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28273.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	10.9	6.04	2.28	1.61	6.14	11.29	7.97	2.94	11.01	12.55	9.04	5.01
Merged-chr1-171378109-2	chr1	171378002	171378202	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122680, intron 1 of 7)	L2c|LINE|L2	7929.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	18.57	15.85	18.25	11.66	7.36	16.62	7.64	5.24	5.9	2.51	2.51	1.25
Merged-chr10-20311584-3	chr10	20311478	20311678	+	768.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-891.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	12.92	10.56	6.28	12.47	8.59	7.21	7.97	9.2	9.44	10.54	8.54	9.08
Merged-chr16-31898496-1	chr16	31898396	31898596	+	768.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013900, exon 16 of 16)	3' UTR (NM_013900, exon 16 of 16)	19686.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	2.83	6.04	6.85	2.01	10.23	10.98	5.31	8.72	4.33	4.02	5.02	3.76
Merged-chr1-87824617-3	chr1	87824520	87824720	+	768.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009118, intron 9 of 15)	intron (NM_009118, intron 9 of 15)	20940.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	2.42	10.06	15.97	14.48	10.23	10.66	8.97	10.79	5.51	11.05	15.58	12.53
Merged-chr18-49982029-3	chr18	49981921	49982121	+	768.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	RLTR12E|LTR|ERVK	2594.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	8.48	7.55	11.41	10.86	14.73	9.72	8.3	6.84	11.01	4.52	16.58	6.89
Merged-chr1-171451196-2	chr1	171451082	171451282	+	768.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	13621.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	6.06	6.29	13.12	7.24	6.95	8.47	4.98	7.88	14.55	18.08	10.05	6.58
Merged-chr2-164940614-2	chr2	164940518	164940718	+	768.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7601.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	6.86	4.28	10.27	0.4	3.27	7.21	5.31	12.62	12.59	13.05	13.57	5.95
Merged-chr9-27000175-3	chr9	27000043	27000243	+	768.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025862)	promoter-TSS (NM_025862)	466.0	NM_001326361	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	8.88	4.53	12.55	8.04	9.0	11.92	7.64	15.79	10.23	8.54	14.57	11.59
Merged-chr17-37026631-2	chr17	37026543	37026743	+	768.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-3245.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	19.79	15.85	14.26	15.28	5.73	10.35	0.0	4.01	7.08	16.07	5.02	1.25
Merged-chr7-118104865-2	chr7	118104778	118104978	+	768.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	11269.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	1.21	6.04	5.13	2.01	9.41	9.72	1.0	9.42	8.26	18.58	10.55	12.22
Merged-chr2-24409405-3	chr2	24409281	24409481	+	768.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177611)	TTS (NM_177611)	22765.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	11.31	4.78	6.85	6.03	5.32	9.72	5.98	10.6	12.0	9.54	15.58	5.64
Merged-chr13-92963815-1	chr13	92963715	92963915	+	768.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109489.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	1.21	6.79	1.14	4.02	0.41	0.94	2.66	0.95	12.19	7.03	11.56	4.39
Merged-chr3-95459329-2	chr3	95459225	95459425	+	768.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	24935.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	10.09	4.02	13.69	8.45	9.0	10.03	3.32	11.75	12.98	2.51	7.03	5.95
Merged-chr1-39735786-3	chr1	39735679	39735879	+	768.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14790.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	3.63	1.76	0.57	1.21	6.14	3.14	3.32	3.67	3.74	7.03	4.52	2.82
Merged-chr7-83639245-1	chr7	83639145	83639345	+	768.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023377, intron 5 of 5)	intron (NM_023377, intron 5 of 5)	7228.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	4.04	3.77	3.42	4.42	1.64	10.66	6.64	5.1	12.59	8.03	8.04	3.45
Merged-chr8-108918559-3	chr8	108918462	108918662	+	768.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-18298.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	12.11	17.1	13.12	14.48	12.68	9.72	5.31	11.72	12.39	9.54	8.54	3.76
Merged-chr14-70181296-3	chr14	70181216	70181416	+	768.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271407, intron 20 of 20)	intron (NM_001271407, intron 20 of 20)	-3644.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	12.52	12.83	9.13	3.22	10.64	11.92	2.66	5.07	23.6	24.6	16.58	16.29
Merged-chr5-123684575-5	chr5	123684518	123684718	+	768.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291229)	promoter-TSS (NM_001291229)	-257.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	7.67	9.31	7.99	8.04	7.77	8.78	4.98	2.07	7.47	8.54	6.53	5.95
Merged-chr9-106299457-3	chr9	106299340	106299540	+	768.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	PB1D10|SINE|Alu	18379.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	8.08	11.82	10.84	5.23	9.0	17.87	3.32	7.37	15.14	7.53	9.04	5.33
Merged-chr2-120559003-2	chr2	120558905	120559105	+	768.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011743, intron 1 of 21)	ORR1C2|LTR|ERVL-MaLR	4854.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	12.11	7.04	9.13	4.02	13.91	9.41	2.99	10.15	8.06	8.54	8.54	9.08
Merged-chr10-87853543-2	chr10	87853441	87853641	+	768.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4724.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.23	1.26	6.85	3.22	6.95	5.96	1.99	9.7	15.74	6.03	12.06	4.39
Merged-chr7-47035608-2	chr7	47035504	47035704	+	768.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-15036.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	4.85	1.76	9.13	11.26	14.32	11.92	11.29	18.45	5.9	10.54	27.13	9.08
Merged-chr4-151073529-3	chr4	151073445	151073645	+	768.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 22 of 23)	intron (NM_001081557, intron 22 of 23)	-15592.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	16.15	14.09	12.55	10.86	14.32	18.19	6.64	13.99	25.18	12.05	12.56	7.52
Merged-chr14-45307858-3	chr14	45307828	45308028	+	768.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015774, intron 1 of 15)	intron (NM_015774, intron 1 of 15)	10644.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	16.96	2.26	5.13	3.22	4.91	8.47	5.98	5.94	5.31	3.51	10.55	8.77
Merged-chr8-117673692-3	chr8	117673594	117673794	+	768.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357272)	promoter-TSS (NM_001357272)	-5.0	NM_001357272	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	10.09	9.56	12.55	9.65	15.96	9.72	6.31	15.59	11.6	12.55	15.58	17.23
Merged-chr1-180974583-3	chr1	180974487	180974687	+	768.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144794, exon 23 of 23)	3' UTR (NM_144794, exon 23 of 23)	32069.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	8.88	10.31	9.13	7.64	19.64	11.6	2.33	10.96	20.65	15.06	12.06	13.16
Merged-chr2-157011157-2	chr2	157011047	157011247	+	768.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164663, exon 15 of 15)	3' UTR (NM_001164663, exon 15 of 15)	-4072.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	11.71	8.3	11.98	2.41	9.41	11.29	5.65	7.88	17.31	7.03	4.52	7.21
Merged-chr13-74026455-3	chr13	74026321	74026521	+	768.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	17002.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	11.71	9.31	11.41	2.41	8.18	9.09	4.98	8.8	9.64	6.53	10.05	3.45
Merged-chr6-114644064-4	chr6	114643947	114644147	+	768.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028835, intron 1 of 18)	ID_B1|SINE|B4	950.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	3.63	5.53	2.28	5.63	5.32	5.96	3.32	7.6	7.87	6.03	5.53	10.02
Merged-chr15-78927316-1	chr15	78927216	78927416	+	768.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008495, intron 1 of 3)	intron (NM_008495, intron 1 of 3)	591.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	5.65	8.05	5.13	1.61	8.59	7.53	8.64	6.84	1.77	4.02	6.53	4.39
Merged-chr11-87578440-3	chr11	87578347	87578547	+	768.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361936)	promoter-TSS (NM_001361936)	58.0	NM_001284398	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	10.9	8.05	10.27	12.87	15.96	14.42	7.97	9.22	15.34	12.55	7.54	8.46
Merged-chr18-67243139-3	chr18	67243026	67243226	+	768.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172630, intron 2 of 10)	intron (NM_172630, intron 2 of 10)	2704.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	6.06	8.05	9.13	7.24	7.36	5.64	3.65	10.88	6.1	3.01	15.07	16.6
Merged-chr18-46365151-3	chr18	46365050	46365250	+	768.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53222.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	5.25	8.05	16.54	19.31	6.95	5.02	7.64	12.0	10.42	7.53	26.63	8.46
Merged-chr7-120124993-2	chr7	120124914	120125114	+	768.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20277.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	6.86	6.04	2.85	5.63	5.32	9.72	8.64	10.85	7.87	8.03	9.55	7.21
Merged-chr8-84745771-3	chr8	84745686	84745886	+	768.116638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	28583.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	6.06	6.29	15.97	13.27	8.18	13.8	23.58	16.18	13.18	10.04	18.09	10.96
Merged-chr14-76052177-3	chr14	76052081	76052281	+	768.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-41316.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	14.13	15.09	6.85	12.07	5.73	8.78	14.28	4.23	18.49	7.03	25.12	8.77
Merged-chr15-38301872-2	chr15	38301814	38302014	+	768.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1203.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	14.94	5.53	10.84	7.24	7.36	6.59	8.64	8.21	10.82	13.05	15.07	10.02
Merged-chr17-65680285-2	chr17	65680179	65680379	+	768.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-38075.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.46	4.53	11.41	3.62	15.14	9.09	5.65	13.18	11.21	8.03	24.12	9.4
Merged-chr7-141216388-2	chr7	141216291	141216491	+	768.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025886, intron 1 of 5)	intron (NM_025886, intron 1 of 5)	531.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	2.02	7.04	5.7	2.82	9.0	7.53	7.97	9.45	5.51	10.04	16.58	9.71
Merged-chr4-72380842-3	chr4	72380728	72380928	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	179584.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.4	7.8	8.56	11.66	11.05	11.29	9.63	13.65	15.54	8.54	12.06	9.4
Merged-chr8-34255194-3	chr8	34255103	34255303	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88491.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	8.48	5.79	11.41	10.86	15.55	9.72	10.96	30.06	11.6	9.04	25.63	9.08
Merged-chr15-97169518-3	chr15	97169415	97169615	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2271.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	2.42	4.78	10.27	9.65	17.59	20.38	9.63	18.36	12.98	12.55	10.05	6.89
Merged-chr16-55687722-3	chr16	55687645	55687845	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134393.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.67	16.35	10.27	7.24	23.32	22.26	11.96	10.71	11.01	17.07	11.56	7.83
Merged-chr3-36319729-1	chr3	36319629	36319829	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-97454.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	1.62	1.01	2.85	5.63	2.45	1.25	6.31	6.45	5.31	1.51	5.53	5.64
Merged-chr13-41619734-1	chr13	41619634	41619834	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	13518.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.63	3.52	5.13	2.41	11.05	3.45	4.32	6.42	3.74	5.52	4.02	4.7
Merged-chr17-29246773-1	chr17	29246673	29246873	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8983.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	7.27	4.02	4.56	1.61	6.14	9.41	5.31	7.6	2.56	8.03	6.53	4.07
Merged-chr7-56013384-1	chr7	56013284	56013484	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153578, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	6189.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	4.04	6.54	6.28	2.41	7.77	7.53	2.99	6.08	0.0	1.0	0.0	1.57
Merged-chr17-34862281-3	chr17	34862192	34862392	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013484)	TTS (NM_013484)	222.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	7.27	6.54	14.83	2.01	11.05	15.37	3.65	11.07	32.06	22.09	23.62	7.83
Merged-chr6-146643090-1	chr6	146642990	146643190	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	511.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	5.65	6.79	5.13	4.42	9.82	9.72	5.98	9.2	15.14	12.05	16.08	12.84
Merged-chr5-137826585-3	chr5	137826483	137826683	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	9695.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	16.56	5.28	9.13	6.03	6.55	16.62	7.31	4.46	10.23	11.05	16.58	2.51
Merged-chr5-43948971-1	chr5	43948871	43949071	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32828.0	NM_008009	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	2.83	3.02	2.28	8.85	4.09	5.64	1.33	6.48	5.31	3.51	7.54	10.34
Merged-chr9-44882176-2	chr9	44882114	44882314	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-940.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	12.52	7.8	8.56	7.64	15.55	9.41	3.99	4.68	6.29	9.04	6.03	12.22
Merged-chr16-95781883-1	chr16	95781783	95781983	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79476.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.81	2.52	11.41	5.63	6.95	8.15	3.99	9.31	3.54	5.52	8.54	5.33
Merged-chr7-16167627-2	chr7	16167536	16167736	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44A|LTR|ERVK	-7759.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	3.23	4.02	7.99	5.63	5.32	7.84	4.32	9.48	8.65	11.05	14.07	14.1
Merged-chr11-62744278-1	chr11	62744178	62744378	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15185.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	1.62	3.27	6.85	2.41	4.5	4.39	2.33	7.15	5.51	15.57	5.02	2.82
Merged-chr5-110841234-1	chr5	110841134	110841334	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016681, exon 2 of 15)	exon (NM_016681, exon 2 of 15)	1217.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	5.65	8.8	1.14	2.82	8.59	7.21	4.32	8.8	4.52	1.0	2.51	0.94
Merged-chr16-89960541-1	chr16	89960441	89960641	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	286.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.02	2.01	3.42	10.05	2.45	1.57	5.31	2.52	4.13	5.02	1.51	2.19
Merged-chr4-136602279-3	chr4	136602182	136602382	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347221, exon 1 of 20)	exon (NM_001347221, exon 1 of 20)	441.0	NM_001356567	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	9.29	11.32	3.42	4.42	13.09	6.9	2.33	3.76	8.46	6.03	1.0	10.96
Merged-chr17-67114927-1	chr17	67114827	67115027	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-88692.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	3.63	2.26	2.28	7.24	2.45	2.82	4.98	8.61	0.79	0.0	2.51	0.0
Merged-chr6-34905570-1	chr6	34905470	34905670	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013366, exon 5 of 15)	exon (NM_001013366, exon 5 of 15)	5261.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	7.27	1.51	0.0	3.22	3.27	14.11	12.95	3.87	6.29	3.51	1.51	4.07
Merged-chr2-128968298-1	chr2	128968198	128968398	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178404, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	896.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	2.42	6.54	2.28	3.22	8.18	5.64	0.0	6.62	5.31	3.51	5.53	9.4
Merged-chr9-111054059-1	chr9	111053959	111054159	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001302376)	TTS (NM_001302376)	3185.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.06	6.04	2.85	3.62	6.95	7.53	1.99	4.32	3.93	4.52	0.5	4.07
Merged-chr10-62197617-2	chr10	62197503	62197703	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-3376.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	6.06	3.27	3.42	6.84	11.45	9.41	19.93	9.76	15.34	5.52	7.03	6.89
Merged-chr3-97666358-1	chr3	97666258	97666458	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182997, intron 5 of 7)	intron (NM_182997, intron 5 of 7)	8146.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	4.85	6.04	6.85	2.01	6.95	2.82	2.33	8.41	11.01	1.0	6.53	4.7
Merged-chr5-143975535-3	chr5	143975460	143975660	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	39293.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	15.34	5.79	2.28	3.62	4.91	8.78	3.32	6.0	7.67	7.53	14.57	4.39
Merged-chr16-96126839-1	chr16	96126739	96126939	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008251, intron 4 of 5)	B3A|SINE|B2	886.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	2.83	2.01	2.85	4.83	4.5	4.7	5.31	6.62	4.92	3.51	6.03	3.13
Merged-chr17-42832439-1	chr17	42832339	42832539	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009847, intron 5 of 17)	intron (NM_009847, intron 5 of 17)	43985.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.85	11.57	15.97	8.04	9.82	3.14	5.31	2.86	9.24	11.05	8.04	2.51
Merged-chr5-62853459-3	chr5	62853382	62853582	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	39659.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	15.75	6.54	11.41	16.89	32.73	29.48	34.88	55.79	8.85	4.52	9.55	5.95
Merged-chr5-105699340-3	chr5	105699272	105699472	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122768)	promoter-TSS (NM_001122768)	-597.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	9.29	4.53	9.7	11.66	9.82	4.39	3.65	9.34	13.57	12.55	12.56	3.13
Merged-chr7-16841699-2	chr7	16841599	16841799	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133789)	TTS (NM_133789)	-1203.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	7.27	8.3	6.28	4.42	6.95	8.47	8.97	10.01	11.21	5.52	13.06	5.64
Merged-chr1-39944467-2	chr1	39944309	39944509	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	43496.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	2.42	2.77	2.85	5.63	3.68	4.08	4.32	3.17	4.52	1.0	5.02	5.01
Merged-chr7-3800117-1	chr7	3800017	3800217	+	768.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289428, intron 12 of 12)	intron (NM_001289428, intron 12 of 12)	44934.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	17.7	9.54	17.59	6.89
Merged-chr17-21708651-2	chr17	21708549	21708749	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001008501, exon 2 of 6)	5' UTR (NM_001008501, exon 2 of 6)	908.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	7.67	7.8	8.56	6.03	7.36	11.29	11.96	14.33	8.26	5.02	9.04	3.45
Merged-chr17-84318642-1	chr17	84318542	84318742	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	-130695.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.81	5.53	1.14	9.65	1.23	5.33	4.98	7.18	9.24	4.52	8.04	4.7
Merged-chr2-3657029-3	chr2	3656927	3657127	+	767.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-56431.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.67	5.79	18.25	14.08	10.23	7.53	8.64	15.17	8.65	20.59	28.64	10.02
Merged-chr10-19187299-3	chr10	19187203	19187403	+	767.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	20065.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	8.08	7.04	5.13	6.03	24.55	7.84	13.95	11.94	13.37	16.57	15.07	13.16
Merged-chr5-90785983-3	chr5	90785840	90786040	+	767.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_203320)	promoter-TSS (NM_203320)	-161.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	8.48	5.79	12.55	4.83	11.05	14.42	7.97	12.11	9.64	12.55	12.06	6.27
Merged-chr4-132331047-2	chr4	132330947	132331147	+	767.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001197082)	TTS (NM_001197082)	-1509.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	8.08	8.8	7.99	4.83	11.05	6.59	2.66	4.15	20.46	15.57	14.07	15.35
Merged-chr13-44734543-3	chr13	44734445	44734645	+	767.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	3274.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	11.31	8.55	7.42	5.63	13.09	23.52	8.3	2.89	12.59	12.55	14.57	4.7
Merged-chr11-100629689-3	chr11	100629612	100629812	+	767.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177790, intron 6 of 7)	intron (NM_177790, intron 6 of 7)	6757.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	15.75	14.84	17.68	14.48	5.73	5.64	7.31	4.71	16.13	14.06	10.05	8.46
Merged-chr8-46908371-2	chr8	46908265	46908465	+	767.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78522.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	8.08	7.29	14.26	11.26	9.82	7.53	5.31	20.78	11.6	15.57	24.62	7.21
Merged-chr6-83643857-3	chr6	83643779	83643979	+	767.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016751)	TTS (NM_016751)	12237.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.06	8.8	2.28	6.03	7.36	10.35	8.3	11.55	4.72	4.02	3.01	4.7
Merged-chr11-101974357-2	chr11	101974271	101974471	+	767.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-7356.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	3.63	2.01	1.14	5.63	9.0	4.39	9.97	15.7	7.67	12.05	14.07	11.9
Merged-chr15-82118902-3	chr15	82118811	82119011	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028897, intron 26 of 30)	RLTR22_Mur|LTR|ERVK	-9011.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	5.65	9.56	11.41	4.83	1.64	10.66	5.98	7.37	8.85	12.05	24.62	5.95
Merged-chr9-110711588-3	chr9	110711482	110711682	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028312)	TTS (NM_028312)	31028.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	7.27	7.55	9.7	8.45	3.68	11.29	8.97	6.76	14.75	9.54	8.04	9.71
Merged-chr1-88246955-3	chr1	88246851	88247051	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	19931.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.63	9.06	18.25	8.45	18.41	10.66	10.63	14.44	8.46	11.55	13.06	16.29
Merged-chr8-33384363-1	chr8	33384263	33384463	+	767.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122822, intron 1 of 33)	intron (NM_001122822, intron 1 of 33)	1164.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	2.83	5.79	7.99	6.84	9.82	7.53	7.31	10.46	2.36	5.52	4.02	3.76
Merged-chr1-191230690-3	chr1	191230596	191230796	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6242.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	9.69	3.02	7.99	8.45	19.64	21.64	36.21	49.49	8.46	10.04	9.04	10.65
Merged-chr15-102002962-1	chr15	102002862	102003062	+	767.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031170, intron 1 of 8)	intron (NM_031170, intron 1 of 8)	1380.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	2.42	3.77	4.56	2.01	1.23	5.02	9.97	3.67	3.93	1.51	8.54	4.39
Merged-chr7-4752878-6	chr7	4752797	4752997	+	767.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183406)	promoter-TSS (NM_183406)	5.0	NM_183406	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	10.9	6.04	2.85	6.44	4.5	8.47	10.96	4.65	4.72	4.52	9.55	4.7
Merged-chr2-129562572-1	chr2	129562472	129562672	+	767.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25970.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.86	5.79	18.25	7.64	0.82	1.25	0.66	0.0	11.21	9.54	22.61	20.36
Merged-chr10-21907208-3	chr10	21907085	21907285	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25001.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	8.48	6.54	4.56	3.22	7.36	11.6	8.97	11.8	17.51	11.55	8.04	8.46
Merged-chr2-24311420-3	chr2	24311312	24311512	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20216.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	11.31	9.56	10.27	11.26	9.82	7.53	5.98	13.91	16.92	9.04	9.04	7.83
Merged-chr5-121848279-3	chr5	121848182	121848382	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-715.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	18.98	12.07	10.27	8.45	8.59	17.87	9.63	9.06	5.9	9.54	11.56	7.21
Merged-chr10-101120428-3	chr10	101120305	101120505	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-378770.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	5.25	5.53	9.13	7.24	10.64	2.82	13.29	17.69	18.88	3.51	21.1	10.65
Merged-chr9-95328688-1	chr9	95328588	95328788	+	767.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	78582.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	3.63	3.52	7.42	5.63	8.18	5.64	7.64	9.06	2.36	2.51	3.52	5.33
Merged-chr18-15063579-2	chr18	15063478	15063678	+	767.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001142731)	promoter-TSS (NM_001142731)	4.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	6.06	8.55	11.41	16.09	9.82	7.84	2.66	14.41	4.52	5.52	7.03	5.95
Merged-chr12-91637650-2	chr12	91637549	91637749	+	767.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-47162.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.63	1.01	5.13	10.05	4.09	6.59	11.63	7.51	10.03	1.0	13.57	1.57
Merged-chr5-74964441-1	chr5	74964341	74964541	+	767.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045866, intron 4 of 4)	intron (NR_045866, intron 4 of 4)	15247.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	4.85	1.76	2.28	8.85	5.73	5.64	8.64	11.41	9.83	2.51	8.54	3.45
Merged-chr3-95142825-3	chr3	95142727	95142927	+	767.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-467.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	6.46	9.56	4.56	6.03	6.14	10.66	3.99	8.13	17.31	14.56	21.61	12.22
Merged-chr17-5250080-3	chr17	5249982	5250182	+	767.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	168685.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.06	9.56	20.54	12.07	6.95	6.27	11.63	23.66	9.64	11.05	14.07	6.27
Merged-chr11-103313780-1	chr11	103313680	103313880	+	767.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	30922.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	9.69	8.55	17.68	19.71	0.41	0.31	0.0	0.5	3.34	1.51	4.02	2.51
Merged-chr8-84722985-3	chr8	84722924	84723124	+	767.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21567.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	8.88	6.54	6.28	6.84	18.0	5.64	7.64	11.41	9.24	4.02	7.54	7.21
Merged-chr9-74825279-1	chr9	74825179	74825379	+	767.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23158.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	2.83	2.52	4.56	5.63	9.41	4.39	6.31	7.91	3.93	3.01	4.52	0.31
Merged-chr19-4856462-1	chr19	4856362	4856562	+	767.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019861, intron 4 of 13)	RMER10B|LTR|ERVL	1333.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	9.29	2.52	12.55	5.23	5.73	5.96	5.65	10.21	9.44	4.02	2.51	4.7
Merged-chr13-119838124-2	chr13	119838025	119838225	+	767.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7908.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	4.85	12.83	4.56	5.23	6.95	11.6	16.94	7.93	16.52	9.54	12.56	7.52
Merged-chr18-32693946-3	chr18	32693848	32694048	+	767.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-121435.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	8.48	10.06	6.28	8.45	11.45	21.32	6.98	5.5	25.57	18.08	14.07	11.9
Merged-chr5-110284714-3	chr5	110284615	110284815	+	767.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008993, intron 1 of 4)	MTE2b|LTR|ERVL-MaLR	1453.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	3.63	9.06	5.7	8.85	11.45	7.21	7.31	9.84	13.96	12.55	14.57	15.04
Merged-chr11-85524402-2	chr11	85524332	85524532	+	767.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	171268.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.44	4.78	0.0	2.82	3.27	4.08	5.65	10.96	11.41	11.05	13.57	10.65
Merged-chr7-132812012-2	chr7	132811900	132812100	+	767.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	1196.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	8.48	10.06	10.84	14.88	10.23	8.47	9.63	7.51	8.06	2.01	7.54	10.65
Merged-chr11-88161804-2	chr11	88161704	88161904	+	767.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7761.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	12.52	6.79	2.28	11.66	11.45	16.31	5.31	8.19	8.85	3.01	8.04	5.95
Merged-chr6-57536333-2	chr6	57536205	57536405	+	767.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-879.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	6.46	11.57	12.55	12.47	2.45	10.35	7.64	7.07	13.96	14.56	10.05	3.45
Merged-chr9-99162996-3	chr9	99162901	99163101	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-22790.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.25	5.53	14.26	10.46	9.41	6.27	4.65	6.53	14.16	8.03	20.1	7.52
Merged-chr16-44029459-3	chr16	44029361	44029561	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 4 of 16)	intron (NM_001359085, intron 4 of 16)	-1516.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	11.31	8.3	5.7	10.46	2.45	7.53	6.98	15.22	22.23	10.54	24.12	10.65
Merged-chr10-19064955-3	chr10	19064856	19065056	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49546.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	9.69	9.56	10.84	15.28	12.68	10.03	10.63	12.36	19.08	10.04	12.56	7.21
Merged-chr5-123903092-3	chr5	123903004	123903204	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4171.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	12.11	5.53	20.54	10.05	6.55	15.68	2.99	9.03	12.39	7.03	14.57	6.58
Merged-chr10-20105511-3	chr10	20105414	20105614	+	767.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-43406.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.25	5.79	11.41	8.45	24.14	8.78	12.95	17.22	15.14	21.09	8.04	8.77
Merged-chr11-90390914-3	chr11	90390796	90390996	+	767.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172563)	promoter-TSS (NM_172563)	21.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	15.34	13.08	6.85	12.47	9.82	9.41	6.98	11.66	6.49	9.04	17.08	8.77
Merged-chr14-45599894-1	chr14	45599794	45599994	+	767.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 11 of 12)	intron (NM_176845, intron 11 of 12)	56184.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	7.67	4.28	7.99	8.04	1.23	4.08	2.99	4.74	9.83	13.05	29.65	10.96
Merged-chr6-70812091-2	chr6	70811982	70812182	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19907.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	8.08	5.28	3.99	3.22	9.0	11.92	7.31	9.22	12.98	12.55	14.07	3.76
Merged-chr3-96568801-1	chr3	96568701	96568901	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2000.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	8.48	5.53	3.42	6.03	2.86	6.27	6.31	7.77	7.67	6.53	7.54	2.19
Merged-chr11-51262475-1	chr11	51262375	51262575	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	582.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	3.63	6.79	7.42	7.24	14.73	11.92	9.3	4.88	5.9	14.06	16.08	8.46
Merged-chr11-107316099-1	chr11	107315999	107316199	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 4 of 9)	MLT1A|LTR|ERVL-MaLR	-126718.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.67	1.01	3.42	3.22	4.09	7.21	5.31	7.82	4.13	5.02	10.55	5.01
Merged-chr12-38854482-2	chr12	38854391	38854591	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 9 of 11)	intron (NM_001347379, intron 9 of 11)	70780.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.65	5.28	7.99	10.86	8.18	3.76	12.95	12.39	3.74	2.51	19.6	4.7
Merged-chrX-169921982-2	chrX	169921880	169922080	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290505, intron 1 of 9)	intron (NM_001290505, intron 1 of 9)	42361.0	NM_001290505	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	2.42	1.01	3.99	2.41	3.27	1.88	10.3	6.08	10.62	8.54	10.05	6.58
Merged-chr5-113622286-1	chr5	113622186	113622386	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	21317.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.48	1.26	4.56	1.61	8.18	5.96	2.99	10.96	1.97	8.03	10.05	5.01
Merged-chr9-53247590-1	chr9	53247490	53247690	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029936, intron 1 of 17)	intron (NM_029936, intron 1 of 17)	522.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	4.44	7.29	4.56	4.02	10.23	6.59	3.65	6.67	7.08	11.05	5.53	4.39
Merged-chr7-97108304-1	chr7	97108204	97108404	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	26553.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	7.67	5.28	8.56	16.09	7.36	7.53	6.98	16.71	3.54	3.01	6.53	8.77
Merged-chr13-81137567-2	chr13	81137473	81137673	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173499.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.85	8.3	5.7	3.22	3.27	5.64	6.31	7.4	9.44	11.55	13.06	4.39
Merged-chrX-13734931-2	chrX	13734840	13735040	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 1 of 4)	MTEa-int|LTR|ERVL-MaLR	15087.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	10.09	4.53	8.56	21.72	7.77	5.64	11.29	9.22	3.93	7.53	6.53	1.88
Merged-chr14-26640597-2	chr14	26640513	26640713	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	2479.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	11.71	5.28	10.27	5.23	6.95	3.76	5.65	6.5	12.78	19.08	14.57	5.95
Merged-chr11-115694177-3	chr11	115694108	115694308	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	5326.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	9.69	5.53	15.4	4.83	12.68	7.53	2.33	13.93	10.42	8.03	7.03	10.34
Merged-chr10-13276544-2	chr10	13276456	13276656	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	47733.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	8.48	3.52	10.27	4.83	11.05	3.45	9.63	12.53	15.93	8.03	7.54	4.7
Merged-chr13-105139962-1	chr13	105139862	105140062	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 7 of 7)	intron (NM_001360891, intron 7 of 7)	57840.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	1.62	3.52	11.41	6.44	11.05	6.27	2.33	11.89	2.56	5.02	5.02	1.57
Merged-chr5-143510631-1	chr5	143510531	143510731	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	17362.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.23	4.78	3.99	4.83	8.59	9.41	1.66	9.79	7.28	4.52	8.04	2.19
Merged-chr14-9467977-3	chr14	9467895	9468095	+	767.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-416100.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.85	3.27	9.13	16.49	11.86	11.29	5.65	12.42	7.47	12.05	12.56	3.45
Merged-chr4-128664199-3	chr4	128664102	128664302	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	9500.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	14.13	7.8	8.56	12.47	18.82	10.35	6.31	3.06	12.59	9.54	7.03	2.51
Merged-chr19-8683240-3	chr19	8683165	8683365	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001112697, exon 3 of 3)	3' UTR (NM_001112697, exon 3 of 3)	19260.0	NM_001112697	12669.0	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	7.67	10.82	9.7	18.1	11.05	10.98	6.64	13.04	10.62	21.09	15.58	7.83
Merged-chr7-83568782-3	chr7	83568688	83568888	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16143.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	12.92	6.54	10.84	6.84	2.05	7.21	2.66	14.07	9.05	7.53	25.12	10.34
Merged-chr6-145212156-3	chr6	145212066	145212266	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163628, intron 1 of 2)	intron (NM_001163628, intron 1 of 2)	1019.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	6.86	5.53	10.27	10.05	9.0	8.47	16.28	13.21	19.47	10.04	8.54	13.78
Merged-chr4-132969502-2	chr4	132969417	132969617	+	767.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4578.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.46	6.29	11.98	5.23	18.0	17.87	7.97	6.48	9.64	8.03	11.56	7.83
Merged-chr2-120494848-2	chr2	120494761	120494961	+	767.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177799, exon 10 of 21)	exon (NM_001177799, exon 10 of 21)	17952.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.44	4.02	6.85	4.02	11.86	23.52	20.26	9.42	17.31	7.53	10.55	3.13
Merged-chr8-68191941-2	chr8	68191838	68192038	+	767.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84590.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	6.06	2.01	5.7	1.21	9.82	6.27	5.31	5.75	16.33	12.05	30.65	10.65
Merged-chr4-150060104-2	chr4	150060012	150060212	+	767.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8342.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	4.85	6.79	10.27	1.21	13.5	30.42	21.92	19.74	2.95	2.51	3.52	0.63
Merged-chr8-37062486-2	chr8	37062388	37062588	+	767.383301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38250.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	6.46	4.02	14.83	8.85	10.64	8.15	8.64	5.07	26.55	13.56	32.66	12.84
Merged-chr1-131275342-3	chr1	131275222	131275422	+	767.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019777, intron 4 of 21)	intron (NM_019777, intron 4 of 21)	4241.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	9.29	11.57	12.55	4.42	13.09	17.87	5.65	6.56	14.95	13.56	13.57	10.65
Merged-chr17-5081064-2	chr17	5080949	5081149	+	767.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	85975.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.06	7.04	12.55	14.88	9.82	7.53	9.63	10.54	5.11	5.02	11.56	5.64
Merged-chr2-26907310-2	chr2	26907221	26907421	+	767.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	3321.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	1.62	3.77	7.42	5.23	7.36	16.31	5.98	5.86	14.36	20.59	18.09	6.89
Merged-chr13-24599802-3	chr13	24599712	24599912	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024599, intron 1 of 1)	intron (NR_024599, intron 1 of 1)	4955.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	11.71	5.53	8.56	21.32	18.0	22.58	15.94	18.9	13.57	15.57	14.07	8.14
Merged-chr12-69374599-1	chr12	69374499	69374699	+	767.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	2449.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	8.88	5.53	8.56	2.01	14.32	7.84	7.64	7.12	6.88	7.53	4.52	5.95
Merged-chr15-80014902-3	chr15	80014776	80014976	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011057)	promoter-TSS (NM_011057)	-68.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.86	8.3	13.69	11.66	10.64	13.17	12.62	9.59	6.1	6.53	5.53	3.45
Merged-chr7-132931645-1	chr7	132931545	132931745	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207302, intron 1 of 9)	CpG	503.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	22.61	18.36	7.42	8.85	23.32	18.81	19.27	15.31	17.31	21.09	25.63	13.47
Merged-chr3-96032866-1	chr3	96032766	96032966	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013841, exon 12 of 15)	exon (NM_013841, exon 12 of 15)	25589.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	14.54	7.04	15.4	6.03	0.41	3.76	1.99	2.61	1.97	1.0	3.01	1.88
Merged-chr10-77917063-3	chr10	77916879	77917079	+	767.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 29 of 33)	RLTR11A|LTR|ERVK	-14443.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	4.85	1.51	4.56	9.25	4.91	5.64	8.64	5.27	6.1	6.03	4.52	5.95
Merged-chr1-144335858-3	chr1	144335750	144335950	+	767.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86746.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.25	5.03	13.69	9.25	11.45	8.47	8.97	20.07	24.19	5.02	20.1	8.46
Merged-chr10-13189750-3	chr10	13189650	13189850	+	767.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181470, intron 3 of 10)	intron (NM_181470, intron 3 of 10)	3387.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	11.71	4.02	16.54	7.24	15.96	15.68	7.64	13.54	24.39	10.04	21.61	6.58
Merged-chr16-11705919-3	chr16	11705816	11706016	+	767.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-73786.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	2.83	6.54	5.7	12.47	9.41	5.02	7.64	15.81	12.0	7.53	10.55	9.08
Merged-chr17-25318559-2	chr17	25318458	25318658	+	767.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053260)	promoter-TSS (NM_053260)	-96.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	8.08	5.03	13.69	23.33	9.41	6.9	14.95	19.99	6.49	0.5	11.05	8.77
Merged-chr11-34073922-2	chr11	34073813	34074013	+	767.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	24641.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	6.06	5.79	3.99	3.62	7.77	3.76	8.64	4.68	16.52	12.55	2.01	6.89
Merged-chr13-89543195-2	chr13	89543106	89543306	+	767.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013500, intron 1 of 4)	intron (NM_013500, intron 1 of 4)	2570.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	8.88	4.02	2.28	4.42	5.73	11.29	1.0	11.02	12.39	9.04	15.58	10.65
Merged-chr9-63975500-2	chr9	63975409	63975609	+	767.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	46550.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	2.83	1.76	7.42	9.65	16.36	10.98	22.92	17.05	6.69	6.03	13.57	6.58
Merged-chr4-104697917-2	chr4	104697818	104698018	+	767.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177259, intron 9 of 14)	intron (NM_177259, intron 9 of 14)	-68399.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	8.88	10.56	17.68	10.46	9.0	10.98	15.28	18.22	6.49	2.51	10.05	2.19
Merged-chr12-104234968-3	chr12	104234885	104235085	+	767.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-1162.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	10.5	18.36	6.85	11.26	7.77	11.6	4.98	11.24	13.18	10.54	21.61	4.39
Merged-chr17-26750146-3	chr17	26750047	26750247	+	767.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-30932.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	7.27	9.06	6.85	9.65	15.55	9.72	13.95	8.97	9.64	10.54	9.55	7.83
Merged-chr16-76201484-3	chr16	76201381	76201581	+	767.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78868.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	9.29	9.31	6.28	18.5	18.0	24.46	16.28	25.46	22.03	11.05	10.05	8.77
Merged-chr5-92485058-3	chr5	92484970	92485170	+	767.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	20587.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	8.88	8.55	11.41	3.22	18.82	21.32	7.64	10.57	14.75	10.54	13.06	1.88
Merged-chr7-98694215-3	chr7	98694083	98694283	+	767.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	8745.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	10.5	10.31	0.57	12.47	11.45	8.78	4.98	6.06	5.11	3.01	1.51	3.13
Merged-chr5-145119667-3	chr5	145119564	145119764	+	767.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	5408.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	3.63	10.31	7.42	8.04	7.77	14.74	7.97	3.14	15.14	16.57	7.54	5.64
Merged-chr4-11166732-3	chr4	11166634	11166834	+	767.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021897, intron 3 of 3)	B3|SINE|B2	10293.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	7.27	5.28	3.42	5.23	4.09	8.15	2.33	9.31	14.75	10.04	15.58	7.21
Merged-chr11-116807661-2	chr11	116807564	116807764	+	767.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20382.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	10.9	11.32	9.7	6.44	12.27	9.09	5.31	9.03	2.56	3.01	5.02	0.0
Merged-chr6-135169985-2	chr6	135169890	135170090	+	767.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1775.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	12.11	9.56	12.55	10.05	6.14	4.7	5.98	7.29	3.93	1.51	2.01	0.94
Merged-chr10-44325834-3	chr10	44325740	44325940	+	767.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314013, intron 5 of 6)	MTE2b|LTR|ERVL-MaLR	-33836.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	6.86	7.29	17.11	12.07	7.36	4.7	11.29	10.07	10.62	15.57	17.08	9.08
Merged-chr1-153401960-3	chr1	153401864	153402064	+	767.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12269.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	4.85	9.31	11.98	10.86	8.18	6.9	2.66	7.29	14.16	9.04	26.13	11.9
Merged-chr3-98069490-3	chr3	98069369	98069569	+	767.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	55931.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	10.5	5.53	10.84	7.64	15.14	12.54	14.62	17.1	5.51	7.03	11.05	10.02
Merged-chr9-7259894-2	chr9	7259813	7260013	+	767.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-12601.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	6.46	4.02	8.56	13.67	6.14	16.93	4.98	10.57	10.82	2.01	9.55	7.21
Merged-chr1-171016959-3	chr1	171016895	171017095	+	767.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1931.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	2.83	2.77	13.69	8.04	7.36	4.7	8.3	9.59	9.05	6.03	12.06	8.46
Merged-chr12-75688977-5	chr12	75688700	75688900	+	767.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19263.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	2.83	4.28	7.42	5.23	7.36	1.57	2.99	5.24	7.08	2.01	8.04	4.7
Merged-chr6-8650638-1	chr6	8650538	8650738	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252266, intron 10 of 11)	intron (NM_001252266, intron 10 of 11)	107820.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	1.21	2.01	0.0	6.84	1.64	1.88	5.98	5.92	3.34	1.51	10.05	2.51
Merged-chr7-30194448-1	chr7	30194348	30194548	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009795, intron 1 of 10)	PB1D10|SINE|Alu	705.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	4.04	9.06	3.42	12.47	4.09	4.7	5.98	4.93	7.87	11.05	12.06	10.96
Merged-chr13-23586741-1	chr13	23586641	23586841	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-771.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	4.44	3.27	3.42	4.02	2.05	5.64	1.0	2.24	7.67	6.03	8.04	4.7
Merged-chrX-166183286-1	chrX	166183186	166183386	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310724, intron 3 of 3)	intron (NM_001310724, intron 3 of 3)	12832.0	NM_001310724	237221.0	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem nuclear organelle associated protein 8	protein-coding	1.62	2.52	3.42	4.42	7.36	0.94	1.66	8.72	7.08	1.0	12.06	5.64
Merged-chr10-80073890-1	chr10	80073790	80073990	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1549.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.06	5.28	11.41	6.84	5.32	6.59	12.29	6.17	6.1	4.52	7.03	6.27
Merged-chrX-169880294-1	chrX	169880194	169880394	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290505, intron 1 of 9)	intron (NM_001290505, intron 1 of 9)	675.0	NM_001290505	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.81	1.01	1.14	2.82	2.05	2.2	6.31	2.86	3.15	3.01	1.0	5.33
Merged-chr4-40774887-1	chr4	40774787	40774987	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17002.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	6.46	3.02	5.13	1.21	3.68	5.96	8.97	6.53	12.98	7.53	8.54	7.83
Merged-chr1-131135306-1	chr1	131135206	131135406	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2928.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	4.04	0.75	4.56	3.22	1.64	7.84	1.33	5.94	5.9	0.5	7.03	5.33
Merged-chr7-93080000-1	chr7	93079900	93080100	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_021427, exon 1 of 2)	5' UTR (NM_021427, exon 1 of 2)	121.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	10.09	4.28	3.42	8.04	9.0	3.76	7.97	8.21	6.1	5.52	5.53	5.01
Merged-chr4-141732110-1	chr4	141732010	141732210	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8691.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.44	5.79	4.56	5.63	11.05	7.84	3.32	6.76	10.42	5.52	9.04	4.39
Merged-chr12-56541228-1	chr12	56541128	56541328	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4320.0	NM_009385	21869.0	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	4.85	4.78	2.85	6.84	2.45	5.02	6.31	6.76	5.31	5.52	3.01	3.13
Merged-chr7-81209127-1	chr7	81209027	81209227	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4677.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.06	3.52	9.13	2.82	5.32	6.59	0.66	6.36	5.9	11.55	11.05	7.83
Merged-chr16-33075148-1	chr16	33075048	33075248	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	MTEb|LTR|ERVL-MaLR	12627.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	4.44	7.04	1.71	11.26	2.05	7.84	1.66	5.07	3.54	5.52	3.52	5.95
Merged-chr8-46432471-2	chr8	46432374	46432574	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38563.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	5.65	16.85	10.84	4.02	4.09	12.23	5.98	1.6	21.64	21.59	17.59	10.34
Merged-chr4-36158391-1	chr4	36158291	36158491	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-313187.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.81	3.52	5.7	2.01	8.59	8.47	8.97	16.4	3.15	3.01	12.56	7.83
Merged-chrX-96255476-1	chrX	96255376	96255576	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177789, intron 4 of 6)	intron (NM_177789, intron 4 of 6)	12659.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	8.48	5.28	3.42	7.24	6.55	5.64	10.96	11.61	8.06	7.03	1.51	6.27
Merged-chr9-99384305-1	chr9	99384205	99384405	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25775.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	5.65	3.52	2.28	4.83	4.91	1.88	4.65	6.5	3.15	1.0	2.51	1.25
Merged-chr4-142054292-1	chr4	142054192	142054392	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-30006.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	1.21	5.03	2.28	7.64	2.05	5.64	1.0	8.78	4.52	7.53	14.07	3.13
Merged-chr17-34296866-1	chr17	34296766	34296966	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9001.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.85	8.05	6.85	6.03	9.82	8.78	2.33	6.93	19.08	8.03	13.57	7.21
Merged-chr18-56934657-3	chr18	56934557	56934757	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1603.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	9.69	7.04	5.13	22.12	20.05	11.92	29.9	25.57	8.65	5.02	26.13	11.28
Merged-chr13-54983233-3	chr13	54983143	54983343	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153131, intron 1 of 15)	intron (NM_153131, intron 1 of 15)	33832.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	10.09	10.06	3.42	18.1	5.73	8.47	4.65	8.21	10.42	14.06	17.59	12.84
Merged-chr8-106933337-1	chr8	106933237	106933437	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2413.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.23	3.52	2.28	1.21	4.5	9.72	2.33	5.5	2.36	2.01	1.0	3.45
Merged-chr15-85670636-1	chr15	85670536	85670736	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-33137.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	3.23	7.55	5.7	6.03	2.05	2.82	8.3	6.76	6.1	5.52	9.55	2.19
Merged-chr12-100021784-1	chr12	100021684	100021884	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57285.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	2.83	5.03	4.56	2.01	7.36	4.08	1.66	5.58	3.15	3.51	9.04	2.51
Merged-chr2-154305678-1	chr2	154305578	154305778	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1566.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.81	1.51	2.85	3.22	5.73	2.2	7.64	7.93	2.95	2.51	6.53	3.76
Merged-chr15-67414512-5	chr15	67414411	67414611	+	766.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	187742.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.02	2.01	5.7	5.63	3.27	2.82	3.65	5.66	2.56	5.02	3.01	0.63
Merged-chr11-83385668-3	chr11	83385563	83385763	+	766.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027915, intron 17 of 20)	intron (NM_027915, intron 17 of 20)	-23474.0	NM_001361566	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	8.48	9.06	14.26	14.08	7.36	9.41	9.3	22.04	5.9	8.54	13.06	7.83
Merged-chr11-101673352-2	chr11	101673256	101673456	+	766.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7815.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.81	0.0	0.0	0.4	13.09	5.64	7.64	8.83	8.65	5.02	14.57	4.7
Merged-chr14-66811198-2	chr14	66811096	66811296	+	766.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	57404.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	7.27	4.02	4.56	2.01	12.27	9.72	7.64	5.83	12.78	6.03	12.06	8.14
Merged-chr7-24638280-3	chr7	24638170	24638370	+	766.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133743, intron 2 of 4)	intron (NM_133743, intron 2 of 4)	1700.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	9.29	8.55	5.13	12.87	9.82	16.93	5.65	10.43	10.42	9.54	14.07	8.46
Merged-chr17-34643042-3	chr17	34642923	34643123	+	766.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1860.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	8.88	6.29	11.41	5.23	11.45	6.27	4.32	6.0	16.33	16.07	15.07	7.83
Merged-chr10-8000169-2	chr10	8000082	8000282	+	766.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-44059.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.46	9.81	15.97	14.88	3.68	9.09	5.65	10.96	8.46	5.52	6.53	6.89
Merged-chr4-11999206-2	chr4	11999113	11999313	+	766.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	32639.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	4.85	4.78	2.85	13.67	9.82	11.29	7.31	27.06	6.29	8.03	14.07	7.52
Merged-chr15-102461175-3	chr15	102461121	102461321	+	766.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2051.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	7.27	8.55	1.14	5.63	8.59	16.62	7.31	3.59	15.34	23.1	9.55	4.7
Merged-chr2-127113962-2	chr2	127113868	127114068	+	766.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144818, intron 12 of 17)	intron (NM_144818, intron 12 of 17)	19986.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	3.23	7.8	11.98	13.27	9.41	8.15	10.96	12.08	4.13	6.03	3.52	4.39
Merged-chr13-51881985-1	chr13	51881885	51882085	+	766.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35310.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.23	5.79	7.99	4.83	9.0	8.15	14.28	8.05	4.13	5.02	3.52	4.07
Merged-chr3-85195258-3	chr3	85195179	85195379	+	766.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-122240.0	NR_040542	73283.0	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	2.83	8.55	2.28	8.45	9.82	6.59	17.94	13.79	4.72	8.03	11.05	4.39
Merged-chr7-27220202-3	chr7	27220101	27220301	+	766.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	8396.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	5.25	9.56	10.27	5.23	7.36	10.66	12.29	8.24	24.59	15.06	21.1	9.71
Merged-chr14-121346732-3	chr14	121346623	121346823	+	766.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32507.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	7.27	9.06	9.13	6.44	10.64	20.38	19.93	12.0	13.77	11.05	12.06	4.7
Merged-chr15-78926693-2	chr15	78926584	78926784	+	766.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008495)	promoter-TSS (NM_008495)	-41.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	8.48	7.04	3.42	6.44	5.73	14.74	7.97	8.8	1.97	4.02	1.51	0.94
Merged-chr3-9914741-1	chr3	9914641	9914841	+	766.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81062.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.21	1.26	4.56	0.8	4.5	6.27	3.99	1.93	11.21	15.57	19.6	8.77
Merged-chr7-72162482-1	chr7	72162382	72162582	+	766.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 16 of 22)	intron (NM_001024703, intron 16 of 22)	144113.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.4	0.5	3.99	1.61	8.59	8.78	10.63	9.56	0.98	3.01	0.0	0.0
Merged-chr8-128679940-1	chr8	128679840	128680040	+	766.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5714.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.46	3.02	1.14	2.41	8.18	8.78	3.32	7.12	8.85	5.02	3.52	1.88
Merged-chr3-132227833-2	chr3	132227726	132227926	+	766.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	142534.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	2.52	10.27	3.62	7.36	10.35	17.61	13.07	10.23	8.03	8.54	10.02
Merged-chr9-45386889-2	chr9	45386799	45386999	+	766.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-12810.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	12.11	9.31	1.14	3.22	5.73	9.72	5.31	3.64	11.8	9.54	5.53	8.14
Merged-chr10-20040887-3	chr10	20040785	20040985	+	766.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	MTD|LTR|ERVL-MaLR	106359.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	9.29	10.56	17.68	11.66	5.73	10.03	4.32	7.77	15.54	14.56	12.06	2.51
Merged-chr6-134106023-3	chr6	134105927	134106127	+	766.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	70327.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	17.36	6.29	13.12	12.87	18.82	6.59	7.31	16.09	24.78	9.04	13.57	4.07
Merged-chr14-45607561-3	chr14	45607452	45607652	+	766.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	50501.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	10.5	8.55	5.7	5.63	9.0	7.53	3.99	7.93	17.9	6.03	13.57	4.39
Merged-chr10-66918618-3	chr10	66918518	66918718	+	766.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_138560, exon 2 of 5)	non-coding (NR_138560, exon 2 of 5)	1766.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	8.08	7.8	7.42	3.22	11.05	21.95	7.97	0.95	21.44	26.61	23.11	3.13
Merged-chr2-44817998-2	chr2	44817905	44818105	+	766.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172662, intron 3 of 10)	ORR1B1|LTR|ERVL-MaLR	43617.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	4.04	0.75	4.56	10.86	2.05	1.25	5.65	6.64	11.41	4.52	19.09	10.34
Merged-chr6-35536242-2	chr6	35536133	35536333	+	766.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	3655.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	4.85	1.26	4.56	4.83	5.32	13.17	5.65	11.16	10.23	11.55	8.04	7.21
Merged-chr9-69994876-2	chr9	69994761	69994961	+	766.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	5395.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	9.69	9.31	8.56	9.65	13.09	12.86	5.98	10.68	7.08	4.52	5.53	0.63
Merged-chr3-18243196-2	chr3	18243117	18243317	+	766.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007825, exon 1 of 6)	5' UTR (NM_007825, exon 1 of 6)	121.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	2.83	4.02	2.85	0.8	10.64	3.76	10.63	4.15	4.92	6.03	7.03	6.27
Merged-chr4-108339542-2	chr4	108339446	108339646	+	766.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027250, exon 3 of 3)	3' UTR (NM_027250, exon 3 of 3)	11394.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	16.56	14.09	13.69	5.23	10.23	14.42	2.66	8.86	9.64	9.54	13.06	5.95
Merged-chr3-116166427-2	chr3	116166279	116166479	+	766.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER104|DNA|TcMar-Tc2	-36691.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.85	3.02	1.14	2.41	6.55	7.21	11.96	4.32	7.87	4.02	8.54	4.7
Merged-chr1-52817253-3	chr1	52817166	52817366	+	766.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	CpG	422.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	3.63	10.82	9.13	8.45	9.0	8.15	8.97	7.85	5.11	9.54	7.54	8.46
Merged-chr6-33263208-3	chr6	33263106	33263306	+	766.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347089, intron 1 of 9)	B1F|SINE|Alu	14078.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.85	8.3	14.83	7.64	9.82	13.8	3.65	10.49	19.87	16.57	14.07	15.98
Merged-chr8-125771381-3	chr8	125771275	125771475	+	766.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 27 of 33)	intron (NM_175561, intron 27 of 33)	37172.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.81	5.28	10.84	4.83	6.55	6.9	7.97	9.39	12.19	11.55	23.62	8.14
Merged-chr2-69109481-3	chr2	69109383	69109583	+	766.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172856, exon 10 of 10)	3' UTR (NM_172856, exon 10 of 10)	-26317.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	11.71	4.53	14.83	7.24	8.59	10.35	7.97	10.54	10.82	4.52	18.09	3.76
Merged-chr15-102525297-2	chr15	102525231	102525431	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018787)	promoter-TSS (NM_018787)	-710.0	NM_018787	54615.0	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	6.06	6.29	2.28	1.61	11.45	11.6	4.65	6.56	14.55	6.53	11.56	3.45
Merged-chr15-6441958-1	chr15	6441858	6442058	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-3375.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	1.21	2.01	3.42	6.44	12.68	6.27	4.65	2.13	2.36	7.53	1.0	4.39
Merged-chr10-21998837-2	chr10	21998762	21998962	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001161850, exon 12 of 12)	3' UTR (NM_001161850, exon 12 of 12)	4196.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.42	4.53	8.56	1.61	5.32	5.02	4.32	3.62	6.49	8.03	8.54	4.07
Merged-chr8-56067062-1	chr8	56066962	56067162	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	126237.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.23	4.78	4.56	4.02	9.0	5.96	10.63	8.27	6.69	5.52	6.53	7.21
Merged-chr15-8681250-2	chr15	8681140	8681340	+	766.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	29567.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	12.92	8.3	6.85	21.72	13.91	4.08	3.32	10.32	13.18	6.03	9.55	4.07
Merged-chr9-108663097-1	chr9	108662997	108663197	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020520, intron 1 of 8)	intron (NM_020520, intron 1 of 8)	999.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	4.04	3.52	3.42	6.44	3.68	6.27	6.31	9.28	1.77	4.02	4.02	0.94
Merged-chr7-79883731-2	chr7	79883622	79883822	+	766.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009682, intron 4 of 5)	intron (NM_009682, intron 4 of 5)	-35512.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	10.5	4.28	13.12	2.41	3.27	11.29	9.97	5.69	12.19	4.52	11.56	1.57
Merged-chr7-90150497-2	chr7	90150390	90150590	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	20277.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.46	7.29	5.7	6.44	4.91	12.23	1.99	9.03	10.42	12.05	18.09	4.39
Merged-chr3-122104591-1	chr3	122104491	122104691	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 13 of 49)	intron (NM_007378, intron 13 of 49)	60131.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	8.88	7.55	1.71	6.03	9.0	11.92	11.96	10.29	10.23	12.05	4.02	4.07
Merged-chr6-100191375-2	chr6	100191289	100191489	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	95969.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.04	1.51	4.56	4.42	2.45	2.51	5.65	10.85	10.03	7.03	13.06	9.08
Merged-chr9-5274538-2	chr9	5274435	5274635	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-23982.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	4.04	6.54	17.11	2.82	1.64	3.14	7.31	6.48	15.14	10.54	7.03	7.21
Merged-chr1-88275645-1	chr1	88275545	88275745	+	766.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1912.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	3.63	0.75	3.42	0.0	1.23	0.94	5.31	1.35	6.88	6.53	8.04	5.01
Merged-chr17-5238020-1	chr17	5237920	5238120	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180747.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	3.23	2.01	1.14	0.8	7.77	6.59	4.98	9.22	2.95	5.52	2.51	5.64
Merged-chr15-51448482-2	chr15	51448320	51448520	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52810.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	4.85	3.77	9.13	2.82	3.27	4.7	4.65	8.47	6.29	4.02	4.52	6.58
Merged-chr7-5059650-2	chr7	5059540	5059740	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290432, exon 5 of 6)	exon (NM_001290432, exon 5 of 6)	-2503.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	11.71	6.04	3.99	7.24	6.55	12.54	3.99	4.74	9.24	17.57	7.54	10.65
Merged-chr4-34387032-3	chr4	34386909	34387109	+	766.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163606.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	16.96	11.32	5.13	9.25	12.68	6.9	4.32	5.78	7.47	3.51	6.03	6.27
Merged-chr5-76525304-3	chr5	76525187	76525387	+	766.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4020.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	8.88	5.28	2.28	6.84	9.0	7.84	7.31	12.9	19.47	7.03	18.59	10.65
Merged-chr7-96406752-3	chr7	96406677	96406877	+	766.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-64813.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	12.52	8.55	15.97	20.11	16.77	17.25	7.31	25.99	9.83	12.05	9.55	11.59
Merged-chr5-125307762-3	chr5	125307659	125307859	+	766.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	33335.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	9.29	10.82	12.55	9.65	8.59	7.84	13.29	15.48	13.96	10.04	22.61	12.22
Merged-chr18-66520369-3	chr18	66520289	66520489	+	766.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16211.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	17.36	6.04	9.7	6.84	14.32	11.92	7.64	15.03	12.19	12.55	12.56	14.1
Merged-chr10-17186413-2	chr10	17186346	17186546	+	766.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90664.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.04	7.04	10.84	4.02	12.68	6.27	8.3	16.15	5.51	5.02	6.53	8.46
Merged-chr2-118779698-3	chr2	118779613	118779813	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170593)	promoter-TSS (NM_170593)	-6.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	11.31	10.31	3.99	8.85	11.45	13.48	8.3	10.74	10.62	11.05	15.58	10.34
Merged-chr17-34657504-3	chr17	34657394	34657594	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10348.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	6.46	7.8	11.41	4.02	3.27	6.27	6.31	8.5	11.41	7.03	14.07	7.21
Merged-chr6-66946089-1	chr6	66945989	66946189	+	766.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	49198.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	8.48	4.28	4.56	2.82	6.95	4.39	7.31	6.79	2.16	7.53	13.06	7.21
Merged-chr16-8784893-1	chr16	8784793	8784993	+	766.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-45207.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	6.86	3.52	1.14	3.22	12.27	8.78	2.66	6.08	5.11	10.54	7.03	3.76
Merged-chr3-55442200-1	chr3	55442100	55442300	+	766.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357475, intron 4 of 16)	intron (NM_001357475, intron 4 of 16)	-19528.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	1.26	0.0	0.4	9.0	0.63	5.98	6.11	4.72	10.04	1.51	1.25
Merged-chr15-27723979-3	chr15	27723895	27724095	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-42453.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.27	4.28	0.57	1.61	20.46	23.2	5.31	9.31	13.18	15.57	13.06	6.89
Merged-chr10-67647359-3	chr10	67647231	67647431	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75372.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.08	6.29	7.99	7.24	6.55	8.47	6.31	6.36	14.36	6.03	14.57	10.34
Merged-chr8-79491507-2	chr8	79491425	79491625	+	766.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92057.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.86	4.53	4.56	3.22	6.55	16.93	13.95	14.13	9.24	11.05	16.58	10.02
Merged-chr5-135887873-3	chr5	135887794	135887994	+	766.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013560)	promoter-TSS (NM_013560)	-25.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	8.88	5.79	8.56	10.86	15.55	14.42	12.95	12.59	13.37	12.55	12.06	6.27
Merged-chr3-9647196-2	chr3	9647111	9647311	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37126.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.83	2.52	7.99	6.03	11.45	15.05	10.96	16.15	7.67	9.04	17.59	6.27
Merged-chr19-47127727-2	chr19	47127639	47127839	+	766.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011053, intron 30 of 35)	(TG)n|Simple_repeat|Simple_repeat	10555.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	6.86	9.06	9.7	4.83	12.27	9.72	4.65	8.24	5.9	5.02	8.54	9.4
Merged-chr13-43557231-2	chr13	43557137	43557337	+	766.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081059, intron 1 of 8)	URR1A|DNA|hAT-Charlie	2954.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	2.02	8.3	10.27	2.01	11.45	9.09	14.62	11.75	6.69	6.53	8.54	7.83
Merged-chr15-61541046-2	chr15	61540934	61541134	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	233417.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	4.04	5.79	3.99	3.62	13.5	15.99	9.3	18.03	9.05	8.03	8.54	7.21
Merged-chr5-135467441-2	chr5	135467363	135467563	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-72917.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	4.85	5.03	2.85	3.62	8.18	7.84	7.31	7.85	10.62	5.52	13.06	12.53
Merged-chr7-43685562-3	chr7	43685446	43685646	+	766.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4872.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	11.71	8.3	19.97	10.86	15.14	22.26	12.29	22.63	10.42	21.59	8.04	7.52
Merged-chr9-40761566-1	chr9	40761466	40761666	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39707.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.62	3.52	9.7	2.82	14.32	13.17	5.98	7.37	2.95	0.0	0.0	1.57
Merged-chr8-128551568-3	chr8	128551479	128551679	+	766.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134075.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	12.92	9.06	10.84	4.83	9.41	10.35	3.32	11.55	11.01	10.04	8.54	6.58
Merged-chr8-120117113-1	chr8	120117013	120117213	+	766.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	L2a|LINE|L2	2961.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	3.63	2.01	1.14	7.24	6.55	7.53	7.97	17.24	5.11	4.02	3.01	6.27
Merged-chr18-84859637-3	chr18	84859536	84859736	+	766.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	8298.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	8.08	7.8	10.84	13.67	12.27	17.25	11.63	12.03	12.39	9.04	7.54	5.95
Merged-chr1-88253602-1	chr1	88253502	88253702	+	766.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	15806.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	4.04	5.28	1.71	1.61	12.68	8.47	8.64	8.36	7.08	6.53	4.52	6.89
Merged-chr7-44856668-3	chr7	44856474	44856674	+	766.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021549)	promoter-TSS (NM_021549)	-572.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	4.85	6.54	3.42	5.23	4.5	6.27	1.99	7.37	5.9	10.54	5.53	2.19
Merged-chr3-34033981-3	chr3	34033861	34034061	+	766.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	13882.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	4.85	7.04	11.98	16.89	11.05	5.64	1.99	9.9	12.19	12.55	15.58	7.52
Merged-chr2-103655252-2	chr2	103655134	103655334	+	766.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88924.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.46	6.79	3.42	5.63	6.14	6.27	5.98	7.54	12.39	1.0	10.55	4.07
Merged-chr2-131086288-2	chr2	131086173	131086373	+	766.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011426, exon 1 of 21)	5' UTR (NM_011426, exon 1 of 21)	492.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	2.42	3.02	3.99	10.86	13.91	5.64	5.65	9.98	3.34	4.52	7.54	3.76
Merged-chr5-97007094-2	chr5	97006978	97007178	+	766.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	9389.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	2.42	3.52	7.42	3.22	28.23	21.01	12.29	13.96	9.05	13.56	8.54	6.89
Merged-chr4-149772626-2	chr4	149772533	149772733	+	766.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	1634.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.08	4.02	7.42	6.44	7.36	7.21	9.3	8.78	9.64	14.56	18.09	14.41
Merged-chr7-80388784-3	chr7	80388660	80388860	+	766.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-814.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	14.13	12.07	11.41	7.24	16.36	5.96	6.98	11.72	8.26	10.04	9.55	14.41
Merged-chr8-70598527-2	chr8	70598438	70598638	+	766.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 14 of 16)	CpG	4057.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	11.71	6.04	6.85	3.22	6.55	8.78	5.31	7.18	13.37	10.04	18.59	11.9
Merged-chr2-132008249-3	chr2	132008144	132008344	+	766.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	21744.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	9.29	2.26	12.55	12.07	24.14	15.37	18.93	21.17	7.87	13.56	23.11	7.83
Merged-chr18-5834585-3	chr18	5834480	5834680	+	766.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241933.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	10.9	6.79	15.4	7.64	15.55	10.35	11.29	9.17	12.0	17.57	13.57	6.27
Merged-chr11-116103701-3	chr11	116103590	116103790	+	766.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	6545.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	10.9	22.39	15.97	18.5	9.82	8.15	9.97	6.98	12.98	7.53	4.52	6.89
Merged-chr6-120908294-2	chr6	120908192	120908392	+	766.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	BGLII|LTR|ERVK	8532.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	12.11	7.29	19.97	10.05	6.55	5.64	10.63	3.79	18.29	10.54	18.09	13.47
Merged-chr2-172346172-2	chr2	172346105	172346305	+	766.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	628.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	4.04	5.79	7.99	2.41	10.23	8.78	12.29	12.48	12.78	11.55	11.56	9.4
Merged-chr1-191950455-2	chr1	191950352	191950552	+	766.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26918.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	4.44	4.02	5.7	12.87	9.0	10.03	10.63	12.17	12.19	10.04	22.11	8.77
Merged-chr11-46457918-3	chr11	46457816	46458016	+	766.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134250, intron 2 of 6)	RMER6B|LTR|ERVK	2985.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.46	7.29	9.7	9.25	14.32	16.62	8.97	11.64	12.19	11.05	32.66	10.02
Merged-chr18-25331243-2	chr18	25331142	25331342	+	766.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033532, intron 6 of 10)	Lx2|LINE|L1	162222.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	5.65	2.52	0.0	6.84	9.0	10.98	4.98	7.43	14.36	12.55	9.04	7.21
Merged-chr18-49827623-3	chr18	49827508	49827708	+	766.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5389.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	12.11	11.57	7.99	10.46	18.82	13.48	8.64	10.18	15.93	8.03	9.55	7.52
Merged-chr1-143740225-3	chr1	143740139	143740339	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-208.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	10.5	7.8	8.56	7.64	10.23	5.96	9.97	11.92	9.24	6.03	10.05	10.34
Merged-chr11-114887590-2	chr11	114887481	114887681	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2460.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	1.21	2.01	0.0	4.02	8.18	4.7	9.97	5.97	11.41	6.03	5.53	9.08
Merged-chr5-151233682-3	chr5	151233574	151233774	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-43481.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.25	7.8	9.7	9.65	4.09	9.72	11.63	10.65	8.26	9.04	10.05	6.58
Merged-chr4-11156971-2	chr4	11156873	11157073	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	532.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	8.08	9.06	14.83	12.87	9.0	5.64	3.32	8.72	10.62	6.53	15.07	6.58
Merged-chr14-122601832-2	chr14	122601720	122601920	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	67492.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.85	7.55	2.28	8.45	4.91	4.08	10.3	8.61	2.95	5.52	9.55	3.13
Merged-chr13-62956962-1	chr13	62956862	62957062	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7931.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.85	0.25	1.71	4.42	7.77	6.59	2.66	7.82	3.54	4.52	3.01	1.57
Merged-chr11-57522345-1	chr11	57522245	57522445	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	3680.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	1.62	3.02	2.28	11.26	5.73	0.94	5.98	11.16	3.15	1.51	3.01	5.01
Merged-chr9-50866049-1	chr9	50865949	50866149	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286553, intron 5 of 16)	MTC|LTR|ERVL-MaLR	9125.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	5.65	3.77	3.99	2.82	4.09	9.72	3.99	9.48	4.92	10.04	12.56	4.39
Merged-chr6-92944386-1	chr6	92944286	92944486	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	3804.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	1.21	4.09	1.57	4.32	6.56	0.0	0.0	0.0	0.31
Merged-chr14-55608955-1	chr14	55608855	55609055	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159417, exon 10 of 10)	exon (NM_001159417, exon 10 of 10)	4376.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	6.46	7.8	6.85	5.63	8.18	5.96	2.66	5.58	2.56	1.51	3.01	3.45
Merged-chr10-99179338-2	chr10	99179246	99179446	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71211.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	6.46	2.01	6.28	5.63	11.05	11.92	3.99	5.8	10.42	5.02	8.54	1.88
Merged-chr12-91400463-1	chr12	91400363	91400563	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113404)	promoter-TSS (NM_001113404)	-530.0	NM_001113404	22095.0	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	6.06	4.78	1.71	3.22	3.27	5.96	5.98	8.89	4.13	2.51	8.54	4.7
Merged-chr9-25158444-1	chr9	25158344	25158544	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-6663.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	2.83	2.26	10.27	4.02	6.95	4.39	8.64	9.79	4.13	4.52	12.06	8.77
Merged-chr12-116028299-1	chr12	116028199	116028399	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19425.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	4.44	7.04	1.14	1.21	10.64	9.41	1.99	11.64	3.54	7.03	5.02	1.88
Merged-chr13-109212309-1	chr13	109212209	109212409	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-112435.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	3.23	6.79	2.28	8.85	3.68	1.25	5.65	6.5	4.72	1.51	6.53	3.76
Merged-chr6-129876733-3	chr6	129876642	129876842	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133203)	promoter-TSS (NM_133203)	-70.0	NM_133203	170733.0	Mm.155514	NM_133203	ENSMUSG00000014543	Klra17	Ly49q|Ly49q1	killer cell lectin-like receptor, subfamily A, member 17	protein-coding	14.54	3.27	6.28	10.86	3.27	6.9	5.98	12.93	12.98	9.54	15.58	10.65
Merged-chr9-42896656-1	chr9	42896556	42896756	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	47715.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	1.62	3.27	5.7	4.02	7.77	3.14	1.66	7.12	5.31	4.02	6.53	5.33
Merged-chr10-37249714-1	chr10	37249614	37249814	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110788.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	1.62	4.28	6.85	8.85	4.5	2.2	5.31	7.49	6.1	5.52	3.01	2.51
Merged-chr4-82633355-1	chr4	82633255	82633455	+	766.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125366.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0.4	0.5	0.0	1.61	0.0	0.0	0.66	0.0	12.78	6.53	5.02	5.01
Merged-chr1-161480011-1	chr1	161479911	161480111	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14646.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.23	6.29	2.28	10.86	8.59	10.35	8.3	13.23	5.7	7.03	5.02	6.27
Merged-chr1-182955306-1	chr1	182955206	182955406	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	518.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.44	4.53	4.56	1.21	10.64	2.51	3.99	6.53	5.7	2.01	2.01	1.57
Merged-chr2-70793533-1	chr2	70793433	70793633	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172664, intron 1 of 19)	ORR1D-int|LTR|ERVL-MaLR	31947.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	3.63	10.56	11.98	5.63	3.27	0.94	3.65	2.86	3.34	1.51	6.03	4.7
Merged-chr1-52119898-1	chr1	52119798	52119998	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205313, intron 1 of 24)	intron (NM_001205313, intron 1 of 24)	276.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	4.85	2.77	1.71	2.41	10.23	8.15	5.31	6.79	6.88	5.02	7.03	5.33
Merged-chr9-96384317-1	chr9	96384217	96384417	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-19886.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.4	1.51	2.85	3.62	10.64	3.76	4.65	7.18	0.0	2.01	1.51	0.0
Merged-chr15-12119159-1	chr15	12119059	12119259	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358823, intron 2 of 18)	intron (NM_001358823, intron 2 of 18)	1308.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	6.06	1.76	2.28	4.83	7.77	6.59	8.64	6.11	9.64	11.05	11.05	8.14
Merged-chr8-27137144-3	chr8	27137051	27137251	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5759.0	NR_045840	71082.0	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	7.27	7.29	8.56	11.26	7.36	8.78	3.32	9.34	8.65	10.04	19.09	7.52
Merged-chr15-41447362-3	chr15	41447287	41447487	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358978)	promoter-TSS (NM_001358978)	-95.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	15.34	4.78	3.42	8.85	48.27	37.94	36.87	64.46	10.62	12.55	10.55	3.45
Merged-chr1-105932643-1	chr1	105932543	105932743	+	766.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	57639.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	8.88	5.79	2.85	2.82	6.95	5.64	4.98	12.93	11.6	7.03	12.06	5.33
Merged-chr10-120247656-2	chr10	120247554	120247754	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20594.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	5.65	6.04	5.13	9.25	8.59	5.02	1.99	6.93	14.55	10.04	4.52	4.7
Merged-chr12-40719153-1	chr12	40719053	40719253	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 16 of 52)	Lx6|LINE|L1	273100.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	1.62	3.27	14.83	3.62	2.45	8.15	3.32	6.48	5.11	4.52	7.03	3.13
Merged-chr6-120467186-3	chr6	120467101	120467301	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	4004.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	9.69	10.31	7.42	5.63	10.23	11.92	10.63	15.25	10.42	12.05	15.58	8.77
Merged-chr3-99211066-2	chr3	99210940	99211140	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027462, intron 4 of 5)	intron (NM_027462, intron 4 of 5)	-11587.0	NR_105852	102465230.0		NR_105852	ENSMUSG00000098918	Mir6481	Gm27744|mmu-mir-6481	microRNA 6481	ncRNA	5.25	4.78	10.84	7.64	5.73	10.03	11.96	12.67	4.72	10.54	6.53	5.95
Merged-chr4-46172044-1	chr4	46171944	46172144	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033201, exon 23 of 23)	3' UTR (NM_001033201, exon 23 of 23)	24267.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	2.02	5.03	2.28	8.04	2.45	3.45	6.31	7.26	4.33	1.0	2.51	6.89
Merged-chr4-9790764-1	chr4	9790664	9790864	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030693, intron 3 of 3)	intron (NR_030693, intron 3 of 3)	20179.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	6.46	3.77	5.7	4.02	4.91	1.88	5.65	6.36	3.74	1.51	6.03	5.64
Merged-chr1-86398563-2	chr1	86398463	86398663	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9202.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	4.85	2.26	6.85	7.24	9.0	6.59	5.31	16.51	17.51	5.52	16.08	8.46
Merged-chr7-105762294-2	chr7	105762212	105762412	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10077.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	7.27	4.28	0.0	6.03	5.32	7.21	4.65	9.73	7.67	6.03	13.06	2.82
Merged-chr7-45343759-1	chr7	45343659	45343859	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029741, exon 22 of 30)	exon (NM_029741, exon 22 of 30)	8490.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.85	5.53	1.14	2.82	13.09	9.41	2.66	4.43	4.33	9.04	5.53	4.39
Merged-chr6-134535019-3	chr6	134534925	134535125	+	765.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	31888.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	8.88	7.8	4.56	10.46	17.18	10.98	4.98	11.36	14.55	2.51	14.57	9.08
Merged-chr16-33077294-3	chr16	33077259	33077459	+	765.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	14838.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	4.85	7.29	11.41	12.07	15.55	9.41	19.93	21.39	9.83	8.03	2.51	3.45
Merged-chr5-45919806-3	chr5	45919702	45919902	+	765.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	12607.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	6.46	6.04	14.26	8.85	4.91	3.76	8.3	7.04	12.19	7.03	28.64	15.98
Merged-chr18-68244650-3	chr18	68244518	68244718	+	765.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357444, intron 2 of 3)	intron (NM_001357444, intron 2 of 3)	16355.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	12.11	7.55	5.7	8.85	8.18	11.29	7.64	7.32	10.42	12.55	13.06	12.53
Merged-chr2-35162811-3	chr2	35162704	35162904	+	765.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_012018, exon 31 of 44)	exon (NM_012018, exon 31 of 44)	30570.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	9.69	16.85	14.26	14.48	8.18	25.4	9.63	9.95	10.23	12.05	5.53	11.59
Merged-chr16-84703133-5	chr16	84703022	84703222	+	765.886658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9901.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	8.08	10.56	2.85	1.21	1.64	6.9	4.32	2.19	20.06	16.07	14.57	2.82
Merged-chr8-46849576-3	chr8	46849463	46849663	+	765.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109818.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	13.33	6.29	11.41	4.02	9.0	15.68	13.29	7.49	13.37	11.05	10.55	10.65
Merged-chr1-74363642-2	chr1	74363525	74363725	+	765.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033345, intron 4 of 9)	intron (NM_001033345, intron 4 of 9)	1517.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	3.23	2.01	1.71	2.01	7.36	7.53	11.29	6.48	5.51	5.02	12.06	6.58
Merged-chr16-4902566-3	chr16	4902469	4902669	+	765.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	16469.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.23	4.28	13.69	6.03	11.45	8.47	6.31	13.6	11.8	14.56	16.58	3.13
Merged-chr2-142768962-2	chr2	142768858	142769058	+	765.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	MER2B|DNA|TcMar-Tigger	132506.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	9.69	3.77	11.41	14.88	6.14	7.84	8.3	12.9	9.05	6.53	8.54	1.57
Merged-chr15-89430856-3	chr15	89430706	89430906	+	765.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-879.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	8.88	12.83	25.67	8.85	12.68	9.72	4.65	3.84	8.06	4.52	5.02	18.17
Merged-chr8-119848021-3	chr8	119847884	119848084	+	765.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7405.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.25	4.28	6.85	8.04	6.55	6.27	6.64	7.51	8.06	10.04	13.06	8.14
Merged-chr19-23149968-2	chr19	23149828	23150028	+	765.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035423)	TTS (NR_035423)	497.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	1.62	1.01	3.99	8.45	6.55	10.98	6.31	12.08	10.82	8.54	17.08	4.7
Merged-chr6-143231064-3	chr6	143230982	143231182	+	765.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-14806.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	6.46	11.32	17.68	18.1	11.05	15.05	8.64	27.06	9.44	7.53	27.64	5.33
Merged-chr6-119373384-2	chr6	119373255	119373455	+	765.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	15379.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	3.23	3.77	0.0	10.46	1.64	5.02	6.98	1.12	1.77	2.51	5.02	4.07
Merged-chr2-127453992-3	chr2	127453886	127454086	+	765.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9421.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	15.75	10.31	8.56	4.42	6.55	13.48	5.65	5.8	5.51	20.08	11.56	8.46
Merged-chr12-80259778-3	chr12	80259690	80259890	+	765.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	CpG	581.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	11.71	10.06	3.42	3.62	8.18	8.15	4.65	9.11	8.85	8.54	9.04	6.27
Merged-chr4-124803075-2	chr4	124802941	124803141	+	765.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	492.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	8.88	6.79	3.42	7.24	11.45	9.72	6.31	8.41	12.39	12.05	7.54	4.07
Merged-chr16-30600629-3	chr16	30600545	30600745	+	765.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	922.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	16.15	14.84	11.98	14.08	9.82	15.99	11.96	5.52	11.41	14.06	12.56	9.08
Merged-chr16-57354616-3	chr16	57354531	57354731	+	765.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	1354.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	12.92	9.06	14.26	1.61	2.86	13.8	7.97	6.45	11.01	11.55	8.54	5.64
Merged-chr9-66277891-2	chr9	66277776	66277976	+	765.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72574.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.06	8.05	2.28	1.21	13.09	9.41	5.98	6.22	14.16	12.05	13.06	8.77
Merged-chr15-67301854-1	chr15	67301754	67301954	+	765.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	75085.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.83	2.77	2.28	3.22	12.27	10.03	9.63	7.85	2.36	1.0	6.03	0.63
Merged-chr5-139832295-1	chr5	139832195	139832395	+	765.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5401.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	2.02	9.06	6.28	4.02	5.73	6.9	9.3	6.79	5.11	1.51	8.54	4.07
Merged-chr16-94250284-3	chr16	94250230	94250430	+	765.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	39961.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.44	7.8	10.84	9.25	2.05	8.47	3.99	5.44	7.47	10.04	13.06	3.76
Merged-chr2-14494353-3	chr2	14494232	14494432	+	765.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012305, intron 12 of 12)	intron (NM_001012305, intron 12 of 12)	105934.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	8.08	8.55	15.97	18.1	21.68	11.6	18.27	27.39	9.05	7.53	19.6	6.89
Merged-chr12-86893263-2	chr12	86893152	86893352	+	765.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8438.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	15.34	4.78	3.42	5.63	6.95	9.09	1.99	5.47	16.13	22.59	14.57	11.28
Merged-chr10-67215305-2	chr10	67215200	67215400	+	765.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207221, exon 4 of 26)	exon (NM_207221, exon 4 of 26)	29550.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.86	6.79	3.99	11.66	8.59	4.39	8.3	9.34	11.01	5.52	9.55	4.39
Merged-chr12-3897304-2	chr12	3897188	3897388	+	765.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153743, intron 5 of 17)	intron (NM_153743, intron 5 of 17)	5544.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.08	6.29	12.55	7.24	5.73	10.03	14.28	25.37	6.29	4.52	9.04	14.1
Merged-chr16-91623235-2	chr16	91623137	91623337	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357351, intron 19 of 21)	intron (NM_001357351, intron 19 of 21)	-4238.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	8.08	9.31	6.85	2.41	9.0	9.72	2.66	3.7	24.98	28.62	27.13	11.28
Merged-chr9-13668994-2	chr9	13668890	13669090	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	6530.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.04	5.03	2.28	7.64	8.18	10.03	10.3	12.79	10.42	10.04	5.53	2.19
Merged-chr11-76677202-2	chr11	76677079	76677279	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2694.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	4.04	16.1	5.7	7.24	4.09	12.23	5.31	5.66	9.05	10.54	8.04	8.46
Merged-chr18-61548988-2	chr18	61548894	61549094	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6279.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	6.46	6.29	9.13	6.44	9.82	11.29	5.98	9.28	8.46	16.57	23.11	7.21
Merged-chr10-80955828-3	chr10	80955736	80955936	+	765.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	25745.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	10.09	9.31	6.85	4.02	6.14	17.56	5.65	11.16	16.33	21.59	14.07	8.14
Merged-chr17-45474916-3	chr17	45474820	45475020	+	765.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	18.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	13.73	10.31	14.26	10.86	7.77	16.93	7.64	11.38	9.64	11.55	17.08	7.52
Merged-chr16-38536928-3	chr16	38536812	38537012	+	765.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153380, intron 6 of 10)	intron (NR_153380, intron 6 of 10)	13344.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	12.92	8.55	1.71	2.41	10.23	5.96	1.99	5.3	15.93	18.08	14.57	9.08
Merged-chr14-65380650-3	chr14	65380548	65380748	+	765.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	21972.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	13.33	7.55	18.25	6.03	24.14	17.56	13.29	13.82	10.42	16.57	5.53	8.14
Merged-chr11-6586827-2	chr11	6586730	6586930	+	765.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146014, intron 4 of 9)	ORR1G|LTR|ERVL-MaLR	19224.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	9.69	5.53	1.71	7.24	17.59	11.92	7.64	17.47	11.21	9.54	13.57	7.83
Merged-chr15-78239679-3	chr15	78239596	78239796	+	765.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5115.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	16.15	14.59	8.56	13.67	11.45	10.35	7.64	8.3	16.52	28.62	10.05	8.46
Merged-chr10-111724849-1	chr10	111724749	111724949	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130576.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	3.02	0.57	6.44	3.27	5.96	6.98	8.19	0.79	2.01	4.02	1.88
Merged-chr14-8255582-1	chr14	8255482	8255682	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053115, intron 4 of 14)	MER91B|DNA|hAT-Tip100	3257.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	4.85	4.28	5.7	4.02	9.82	10.66	3.99	7.37	6.69	10.54	2.01	2.82
Merged-chr4-65562636-1	chr4	65562536	65562736	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-42350.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	2.42	2.52	3.42	4.02	8.59	4.39	3.65	8.55	3.74	6.03	7.03	2.51
Merged-chr6-122824666-2	chr6	122824592	122824792	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4508.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	2.02	3.27	7.99	6.84	5.73	9.09	1.99	5.75	11.8	5.02	10.55	6.58
Merged-chr6-40479923-2	chr6	40479823	40480023	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212468, intron 6 of 6)	intron (NM_212468, intron 6 of 6)	8455.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	3.23	6.54	5.7	4.83	4.09	9.41	5.31	8.36	13.96	5.02	10.55	9.08
Merged-chr15-63650311-3	chr15	63650210	63650410	+	765.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158429.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	10.5	10.31	6.85	4.02	11.05	14.74	9.3	10.85	8.46	9.54	7.54	4.07
Merged-chr4-58723067-2	chr4	58722982	58723182	+	765.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62638.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	10.5	13.58	13.69	10.46	7.77	7.53	5.31	9.31	8.26	3.01	4.02	4.39
Merged-chr7-73528581-2	chr7	73528465	73528665	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	13181.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.27	4.53	10.27	5.63	3.68	11.92	4.98	5.41	7.08	7.03	10.05	8.14
Merged-chr5-119240781-1	chr5	119240681	119240881	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40763.0	NR_046033	665194.0	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	2.83	2.52	1.71	4.83	13.91	9.72	6.64	6.81	0.0	0.0	0.0	0.0
Merged-chr13-37778918-2	chr13	37778823	37779023	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-47115.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.08	6.79	3.99	3.22	13.09	8.78	6.98	6.28	11.41	3.01	4.02	9.4
Merged-chr8-94182166-2	chr8	94181977	94182177	+	765.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	2988.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	8.48	7.29	4.56	2.82	3.68	11.29	1.99	3.42	3.74	5.52	2.01	5.33
Merged-chr11-110987267-2	chr11	110987177	110987377	+	765.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-10210.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	5.65	5.28	5.7	4.02	16.36	10.66	7.97	16.32	14.16	13.56	10.05	3.45
Merged-chr19-61229130-3	chr19	61229024	61229224	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-706.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	13.33	10.31	4.56	6.84	8.18	8.78	4.32	7.6	10.23	6.03	12.56	8.46
Merged-chr19-3951635-3	chr19	3951547	3951747	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7161.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	8.08	11.82	1.14	4.42	10.23	3.76	5.65	10.85	10.03	6.03	15.07	6.27
Merged-chr15-93399822-3	chr15	93399712	93399912	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358749, intron 2 of 8)	T-rich|Low_complexity|Low_complexity	1348.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	14.13	10.82	16.54	6.44	6.95	4.7	3.99	6.98	15.34	9.04	5.53	8.14
Merged-chr10-57001534-3	chr10	57001435	57001635	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	484818.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	10.9	8.3	7.42	14.48	16.77	22.58	14.95	24.31	11.21	11.05	17.08	8.14
Merged-chr11-115105338-3	chr11	115105242	115105442	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	13911.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	12.52	12.83	31.38	19.71	11.86	12.86	4.98	6.73	8.85	7.53	9.55	4.07
Merged-chr3-88490863-2	chr3	88490779	88490979	+	765.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2433.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	2.83	6.79	8.56	2.82	10.23	7.21	6.64	7.4	15.34	10.54	4.02	4.07
Merged-chr10-89453972-2	chr10	89453865	89454065	+	765.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9998.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	13.73	4.28	1.14	6.44	9.0	12.23	9.63	9.11	7.67	6.03	3.52	5.95
Merged-chr11-117308044-3	chr11	117307934	117308134	+	765.399963	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-23681.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	8.08	8.05	11.41	10.05	19.23	7.53	9.63	13.51	11.01	6.03	14.07	6.58
Merged-chr19-10023433-3	chr19	10023331	10023531	+	765.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5237.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	9.29	2.01	6.85	15.28	11.86	7.53	7.97	8.83	16.13	11.05	13.57	10.96
Merged-chr13-83655166-2	chr13	83655062	83655262	+	765.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347576, intron 8 of 10)	intron (NM_001347576, intron 8 of 10)	-66219.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	7.27	9.56	11.41	19.31	6.95	10.03	19.27	14.64	9.83	10.54	4.52	5.64
Merged-chr15-90322863-2	chr15	90322742	90322942	+	765.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30868.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	6.46	5.03	6.85	11.26	17.59	10.66	5.65	12.34	7.28	5.02	11.56	0.94
Merged-chr9-47647719-2	chr9	47647622	47647822	+	765.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	117370.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	9.69	6.29	14.83	9.25	15.96	5.96	8.97	10.49	6.69	7.53	8.04	7.83
Merged-chr6-117553574-2	chr6	117553464	117553664	+	765.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58329.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	4.85	2.26	2.85	1.21	9.0	5.33	7.31	7.15	15.93	9.04	17.59	5.95
Merged-chr16-50630647-2	chr16	50630558	50630758	+	765.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-39504.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	10.5	3.52	5.7	0.8	7.36	11.29	10.3	10.09	10.42	12.55	11.56	5.95
Merged-chr4-141618033-3	chr4	141617936	141618136	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001013780)	TTS (NM_001013780)	597.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	7.67	8.05	2.28	11.26	6.14	7.21	5.65	8.07	9.44	13.56	14.57	4.7
Merged-chr16-91362889-1	chr16	91362789	91362989	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.04	8.05	2.28	0.0	11.05	15.68	7.97	2.61	3.54	9.04	2.51	3.76
Merged-chr10-50894571-3	chr10	50894441	50894641	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1110.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	7.27	8.05	12.55	3.62	11.45	11.6	22.92	18.84	9.44	5.52	6.03	14.41
Merged-chr5-73564636-1	chr5	73564536	73564736	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	67785.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	3.23	7.04	7.99	7.24	8.59	7.53	3.99	6.84	8.26	5.52	5.53	6.27
Merged-chr12-81833241-1	chr12	81833141	81833341	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26789.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	9.29	5.53	1.14	5.23	6.95	6.27	7.31	5.83	9.05	8.03	5.02	1.57
Merged-chr6-120363275-3	chr6	120363167	120363367	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-832.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	8.48	6.54	2.28	2.41	4.91	13.48	9.3	4.29	16.92	7.03	9.04	8.46
Merged-chr19-41764931-1	chr19	41764831	41765031	+	765.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17970.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.81	0.0	0.0	0.8	0.82	0.31	0.0	1.12	12.78	3.01	20.1	11.59
Merged-chr5-99729069-1	chr5	99728969	99729169	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_030692)	promoter-TSS (NR_030692)	-9.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.63	2.77	7.42	4.02	9.82	4.39	5.98	6.56	11.01	5.52	4.52	3.13
Merged-chr3-58655495-3	chr3	58655386	58655586	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3444.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	9.69	8.05	8.56	11.66	15.96	19.13	13.95	23.07	12.19	10.04	17.08	10.34
Merged-chr5-22549438-3	chr5	22549344	22549544	+	765.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	887.0	NM_011959	26429.0	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	10.5	4.53	11.41	16.09	8.18	6.59	6.31	21.73	4.92	11.55	17.59	13.16
Merged-chr18-57800419-3	chr18	57800342	57800542	+	765.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-8109.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	7.67	5.79	11.98	11.66	8.18	12.86	21.26	36.08	10.03	5.02	23.62	14.1
Merged-chr4-43741989-1	chr4	43741889	43742089	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9870.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	2.42	1.26	3.99	0.0	8.59	6.9	3.99	7.4	3.74	3.51	4.52	4.07
Merged-chr9-108692827-2	chr9	108692734	108692934	+	765.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 1 of 10)	CpG	691.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.44	7.55	14.26	8.85	3.68	7.84	5.31	7.12	9.24	18.08	13.06	8.77
Merged-chr18-75369989-2	chr18	75369882	75370082	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	2617.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	8.08	1.76	1.71	5.23	8.18	4.39	8.3	7.49	12.78	7.03	9.55	6.58
Merged-chr9-116098740-2	chr9	116098660	116098860	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76603.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.06	2.52	9.13	5.63	13.91	12.23	11.29	7.01	5.9	3.01	10.55	10.02
Merged-chr11-114973029-1	chr11	114972929	114973129	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	-12612.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	1.21	2.52	6.28	0.0	10.64	11.29	5.65	6.31	2.36	0.0	1.0	0.63
Merged-chr16-91484069-1	chr16	91483969	91484169	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-1146.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	5.65	1.76	0.0	5.23	14.73	7.53	9.3	5.05	5.31	6.03	7.03	3.76
Merged-chr15-93276439-2	chr15	93276367	93276567	+	765.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1288.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	2.42	8.55	6.85	12.07	6.55	6.59	12.62	12.48	6.69	8.54	4.52	6.89
Merged-chr9-75071343-4	chr9	75071266	75071466	+	765.229187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010864, exon 1 of 41)	5' UTR (NM_010864, exon 1 of 41)	160.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	8.48	9.06	2.85	8.45	10.23	7.53	6.98	7.79	10.03	5.52	9.04	7.21
Merged-chr6-127251873-3	chr6	127251741	127251941	+	765.227783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56126.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	9.69	10.06	5.13	2.82	12.68	9.72	11.63	6.5	10.42	9.54	9.55	7.83
Merged-chr9-88966280-3	chr9	88966166	88966366	+	765.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	9346.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	11.31	13.08	15.4	22.52	5.32	13.8	19.6	3.0	14.36	11.05	18.59	8.46
Merged-chr18-38228587-3	chr18	38228506	38228706	+	765.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-18844.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	7.27	1.26	7.99	8.04	13.91	6.27	4.98	14.55	9.83	10.04	12.56	14.1
Merged-chr10-68176493-1	chr10	68176393	68176593	+	765.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	102233.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.27	4.78	14.83	5.63	9.82	8.78	13.62	6.48	3.15	0.0	4.02	1.88
Merged-chr4-148900930-3	chr4	148900702	148900902	+	765.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027195, intron 3 of 15)	CpG	51520.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	1.62	1.51	1.71	1.21	4.09	4.08	2.33	6.17	3.54	6.53	1.51	3.76
Merged-chr7-29303900-3	chr7	29303821	29304021	+	765.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013874)	promoter-TSS (NM_013874)	-84.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	7.67	12.58	12.55	11.26	6.95	7.53	1.99	10.09	13.18	14.06	16.58	10.02
Merged-chr19-53107086-2	chr19	53107003	53107203	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30851.0	NR_045320	78457.0	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	8.08	4.78	3.99	6.84	4.09	10.03	6.98	7.71	8.06	7.53	7.54	9.4
Merged-chr1-184606070-2	chr1	184605986	184606186	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48395.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.06	6.29	19.4	8.85	7.36	8.47	8.64	23.36	11.21	11.05	14.57	10.96
Merged-chr7-113505268-2	chr7	113505154	113505354	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8580.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	4.44	8.55	5.7	1.61	9.82	11.92	10.96	10.65	10.03	5.52	5.02	10.96
Merged-chr11-117810153-2	chr11	117810051	117810251	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009304, intron 1 of 3)	CpG	484.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	6.06	4.28	5.7	0.8	8.18	21.95	6.64	3.5	13.96	12.05	15.07	6.89
Merged-chr1-166154356-2	chr1	166154254	166154454	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360926)	TTS (NM_001360926)	24133.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	2.83	3.52	0.0	1.61	11.05	11.29	3.32	5.78	10.82	12.05	13.06	4.7
Merged-chr4-133931542-3	chr4	133931448	133931648	+	765.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	36443.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	18.57	11.82	12.55	11.66	30.68	29.16	8.97	15.95	15.34	12.05	11.56	9.71
Merged-chr2-101871370-3	chr2	101871266	101871466	+	765.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11661.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	7.27	6.54	0.57	8.45	13.09	7.53	14.62	10.57	18.29	11.05	13.06	1.57
Merged-chr9-41170160-2	chr9	41170057	41170257	+	765.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12095.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.46	7.55	2.85	6.44	12.68	8.78	5.98	12.2	7.08	10.04	13.06	10.65
Merged-chr7-38085943-4	chr7	38085888	38086088	+	765.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21502.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.44	11.57	4.56	9.65	12.68	4.39	6.31	10.54	6.88	3.01	9.04	11.28
Merged-chr2-22771559-3	chr2	22771450	22771650	+	765.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2777.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	20.19	14.84	13.69	8.04	3.27	9.41	8.97	4.04	25.77	22.59	14.07	4.39
Merged-chr5-21658820-3	chr5	21658710	21658910	+	765.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	12826.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	7.27	5.28	15.4	7.64	8.18	9.72	12.29	10.23	23.21	14.56	19.09	3.45
Merged-chr10-7888456-3	chr10	7888362	7888562	+	765.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52081.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	10.9	5.79	9.7	13.67	8.59	10.98	8.97	7.15	10.42	5.02	9.55	4.39
Merged-chr16-97523276-3	chr16	97523161	97523361	+	765.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12820.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	12.11	17.36	9.13	10.46	5.32	14.74	10.96	16.29	8.26	9.54	7.54	2.51
Merged-chr5-147073128-2	chr5	147073026	147073226	+	765.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	3446.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	22.61	7.55	13.69	11.26	12.27	11.92	6.98	13.46	3.54	2.01	0.0	0.0
Merged-chr19-32907172-4	chr19	32907106	32907306	+	765.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149629.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.46	4.53	3.42	6.84	9.0	2.2	3.32	3.36	5.51	3.51	3.52	2.82
Merged-chr6-97402734-2	chr6	97402643	97402843	+	765.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56543.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.81	5.79	11.98	4.02	7.36	9.41	10.96	13.74	9.24	11.05	7.54	6.58
Merged-chr2-157130014-2	chr2	157129889	157130089	+	765.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	5233.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	7.27	3.02	3.42	9.65	13.09	10.03	5.65	6.06	13.18	8.03	9.55	5.33
Merged-chr19-12004870-1	chr19	12004770	12004970	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER34A1|LTR|ERV1	31870.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.86	2.01	4.56	4.02	2.45	5.96	3.65	7.91	4.92	2.01	2.51	3.76
Merged-chr19-45064077-1	chr19	45063977	45064177	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11164.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	6.06	6.04	1.14	4.83	13.5	7.53	6.98	6.59	6.1	5.52	3.52	6.27
Merged-chr14-87422494-1	chr14	87422394	87422594	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	5911.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	1.62	0.5	2.28	3.62	2.86	2.51	3.32	4.51	2.36	5.02	3.01	0.63
Merged-chr1-77827572-1	chr1	77827472	77827672	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-312484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.83	5.28	9.13	2.41	9.82	1.25	4.65	6.08	6.29	2.01	1.0	2.51
Merged-chr6-148444931-2	chr6	148444831	148445031	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-579.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	6.86	7.29	17.11	11.26	11.05	5.33	12.29	14.92	8.65	5.02	7.54	8.77
Merged-chr7-49794558-1	chr7	49794458	49794658	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133740, intron 8 of 15)	intron (NM_133740, intron 8 of 15)	16200.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	3.23	0.0	3.42	3.22	4.91	6.27	5.31	6.62	2.56	1.0	4.52	0.63
Merged-chr18-38573586-1	chr18	38573486	38573686	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27682.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	6.46	3.02	6.28	4.02	5.73	5.64	3.99	8.13	3.93	0.5	9.55	0.63
Merged-chr16-32332767-3	chr16	32332612	32332812	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177633, intron 1 of 10)	CpG	460.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	4.44	8.55	6.28	10.46	11.86	5.02	7.31	10.85	7.47	5.52	6.03	7.52
Merged-chr2-58752409-2	chr2	58752301	58752501	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-2783.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.85	4.53	12.55	7.24	5.32	9.72	3.65	10.01	9.24	6.03	16.08	5.33
Merged-chr7-110382501-2	chr7	110382399	110382599	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	RMER10B|LTR|ERVL	160796.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.23	3.27	6.85	6.44	3.68	5.33	7.31	6.98	8.26	5.52	7.54	6.58
Merged-chr2-150750366-2	chr2	150750288	150750488	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1307.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	3.23	6.29	6.85	6.03	2.86	9.41	5.65	7.6	7.67	5.52	3.52	3.76
Merged-chr11-75767739-2	chr11	75767642	75767842	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007873)	TTS (NM_007873)	-28067.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	3.23	5.53	3.42	5.23	6.55	7.53	3.65	6.73	10.82	2.01	6.03	13.47
Merged-chr8-119830764-2	chr8	119830763	119830963	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	9716.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.85	2.52	5.7	2.41	3.68	3.76	5.31	2.58	5.51	6.53	4.52	3.76
Merged-chr11-103053387-1	chr11	103053287	103053487	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008707, intron 4 of 11)	B3|SINE|B2	24844.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.81	0.5	0.0	0.8	5.73	4.39	1.33	10.15	1.77	2.51	3.52	0.31
Merged-chr10-13199413-2	chr10	13199312	13199512	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-6275.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	14.54	4.53	10.84	9.65	12.68	11.6	2.99	13.71	5.9	1.51	2.01	2.51
Merged-chr9-100503926-3	chr9	100503851	100504051	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	B1_Mm|SINE|Alu	2905.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	11.31	12.58	7.99	4.42	9.0	5.64	7.64	3.17	8.46	3.51	7.54	1.88
Merged-chr3-69128322-1	chr3	69128222	69128422	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1230.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.85	4.28	27.38	3.22	9.0	11.6	7.31	15.9	7.28	6.03	8.54	13.16
Merged-chr17-10722780-1	chr17	10722680	10722880	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	117411.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.23	2.01	2.85	4.02	8.59	11.29	13.29	15.67	7.08	5.52	11.05	4.39
Merged-chr9-116169221-1	chr9	116169121	116169321	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	6142.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.25	2.77	2.28	2.41	4.09	6.59	3.65	6.62	2.16	1.0	0.5	0.63
Merged-chr4-142078201-3	chr4	142078093	142078293	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6105.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	1.21	6.04	10.27	3.22	18.82	14.11	6.31	10.79	12.59	16.07	10.05	5.64
Merged-chr7-142391256-1	chr7	142391156	142391356	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3386.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.81	4.02	3.99	0.8	8.18	5.64	3.32	11.66	4.52	2.01	5.53	2.51
Merged-chr8-110847501-1	chr8	110847401	110847601	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	477.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	6.06	6.79	9.13	2.01	7.36	5.33	1.33	7.54	4.52	6.53	7.03	9.08
Merged-chr17-53582022-1	chr17	53581922	53582122	+	765.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-2104.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	2.42	1.76	6.85	6.44	4.09	0.0	1.66	4.68	11.41	6.03	6.53	9.08
Merged-chr13-73476391-1	chr13	73476291	73476491	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	9008.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.63	2.77	2.85	7.64	5.73	2.51	7.97	6.03	5.7	2.51	4.52	5.33
Merged-chr16-36920629-3	chr16	36920533	36920733	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030035, intron 14 of 21)	intron (NM_030035, intron 14 of 21)	-14350.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	5.25	6.29	12.55	35.39	4.09	1.25	21.92	19.37	11.41	7.03	18.09	4.39
Merged-chr7-63907310-1	chr7	63907210	63907410	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	B1_Mur3|SINE|Alu	-9547.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.62	2.26	6.28	0.8	3.27	1.57	0.0	6.25	5.31	4.02	2.51	3.76
Merged-chr8-46742753-1	chr8	46742653	46742853	+	765.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	3008.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.27	7.29	19.4	2.41	5.73	5.02	6.64	3.22	16.33	15.57	11.56	4.39
Merged-chr3-148867776-1	chr3	148867676	148867876	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	86859.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.81	0.5	0.0	0.0	1.64	7.21	5.65	6.7	2.95	5.02	6.53	5.33
Merged-chr13-37130798-1	chr13	37130698	37130898	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80554.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	2.42	3.02	3.42	5.63	8.59	1.88	5.98	6.84	1.57	1.51	5.53	4.07
Merged-chr12-73324910-2	chr12	73324817	73325017	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	38069.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	8.08	8.05	10.27	17.29	4.5	6.59	4.32	12.56	3.34	0.5	6.53	3.45
Merged-chr13-73426015-2	chr13	73425907	73426107	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41376.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	6.86	4.02	8.56	2.41	6.14	5.96	6.98	6.93	13.37	7.53	11.56	3.45
Merged-chr10-107990011-1	chr10	107989911	107990111	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43366.0	NR_131147	628877.0	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	1.21	1.76	0.57	2.01	2.86	1.25	1.99	6.67	1.97	1.0	1.0	3.76
Merged-chr5-140641069-3	chr5	140640969	140641169	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	7962.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	10.9	10.06	14.26	9.65	13.91	4.08	4.98	8.92	14.55	7.53	14.07	8.77
Merged-chr11-69260950-2	chr11	69260849	69261049	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23927.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.81	1.51	6.85	5.23	7.77	6.27	6.64	10.91	9.44	9.54	6.53	11.28
Merged-chr4-83262386-1	chr4	83262286	83262486	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 4 of 19)	ID_B1|SINE|B4	61803.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.81	1.26	0.0	0.0	5.73	0.94	1.33	1.09	4.72	1.0	1.51	1.88
Merged-chr4-156109239-3	chr4	156109149	156109349	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-749.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	6.46	7.8	3.42	4.42	6.55	11.29	5.31	4.29	10.42	23.6	21.61	9.4
Merged-chr11-43492888-2	chr11	43492782	43492982	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18576.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	6.86	1.76	6.28	4.42	9.82	3.76	3.65	9.03	8.65	9.04	10.05	6.27
Merged-chr17-26540045-3	chr17	26539953	26540153	+	764.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	-21459.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	18.57	7.55	3.42	10.46	15.14	14.74	12.29	9.59	10.03	19.58	5.53	7.21
Merged-chr11-114926966-3	chr11	114926869	114927069	+	764.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7417.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	9.29	6.54	30.23	11.26	15.14	15.05	14.62	21.93	13.37	12.55	15.07	8.14
Merged-chrX-48202147-3	chrX	48202061	48202261	+	764.9277950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172465, intron 2 of 9)	intron (NM_172465, intron 2 of 9)	6541.0	NM_172465	208884.0	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	9.29	6.04	6.85	14.88	10.23	8.78	7.97	11.19	12.39	26.11	12.06	7.21
Merged-chr11-69033855-4	chr11	69033801	69034001	+	764.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281465, intron 17 of 22)	intron (NM_001281465, intron 17 of 22)	-11736.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.65	4.78	14.26	12.07	7.36	3.14	7.64	9.45	6.69	6.03	3.52	2.19
Merged-chr3-52029860-2	chr3	52029743	52029943	+	764.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75163.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	14.94	3.77	5.7	10.05	7.36	8.47	5.31	8.75	12.98	6.53	12.06	6.58
Merged-chr12-105963261-3	chr12	105963177	105963377	+	764.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46986.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	8.48	6.04	13.12	5.63	3.27	8.15	6.64	5.66	12.0	7.53	16.58	6.58
Merged-chr6-125030736-3	chr6	125030639	125030839	+	764.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130997, intron 1 of 3)	intron (NR_130997, intron 1 of 3)	-9109.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	14.54	6.54	9.13	11.26	15.14	12.23	5.98	6.76	19.08	16.57	10.55	14.41
Merged-chr9-13560188-2	chr9	13560087	13560287	+	764.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59802.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.04	6.79	5.13	6.84	8.18	10.35	6.64	9.42	11.8	2.51	8.04	12.53
Merged-chr8-120332843-2	chr8	120332736	120332936	+	764.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104606.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	6.06	3.77	4.56	6.84	10.64	8.47	7.97	12.11	9.24	14.06	4.52	6.27
Merged-chr6-108447775-2	chr6	108447676	108447876	+	764.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41967.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.42	3.27	2.28	8.45	6.55	5.64	7.97	9.5	8.26	2.51	10.55	4.39
Merged-chr19-24981522-3	chr19	24981422	24981622	+	764.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18007.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.04	13.83	8.56	12.47	20.46	13.17	17.94	26.78	12.98	13.05	11.05	15.66
Merged-chr10-128790954-3	chr10	128790863	128791063	+	764.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164197)	promoter-TSS (NM_001164197)	8.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	4.04	5.28	11.98	9.25	15.96	3.45	11.96	10.04	9.05	11.05	13.06	5.33
Merged-chr9-86479252-3	chr9	86479141	86479341	+	764.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	12087.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	6.46	8.05	9.7	7.24	8.18	11.6	3.99	10.43	11.01	10.54	19.6	7.52
Merged-chr10-88504657-2	chr10	88504545	88504745	+	764.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-675.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	5.65	10.82	8.56	4.02	8.18	21.01	7.97	10.6	10.42	8.03	4.52	6.27
Merged-chr12-3424138-5	chr12	3424033	3424233	+	764.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	ID4|SINE|ID	2614.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	3.23	1.01	7.99	3.22	2.05	6.59	3.65	0.79	3.93	0.5	0.5	5.33
Merged-chr8-126881236-2	chr8	126881142	126881342	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	32222.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.46	1.76	0.0	3.22	9.82	4.7	5.98	5.55	10.23	2.51	7.03	7.21
Merged-chr6-145750710-1	chr6	145750610	145750810	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57673.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.23	2.52	3.99	4.02	6.14	6.27	5.98	18.56	2.36	2.01	8.54	4.7
Merged-chr18-57745307-2	chr18	57745205	57745405	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34690.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	4.85	5.53	0.57	5.63	8.59	8.15	2.66	7.54	13.57	16.57	10.05	2.19
Merged-chr16-32876908-1	chr16	32876808	32877008	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-876.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	3.63	3.52	2.85	6.84	9.41	8.78	5.65	12.5	6.1	5.02	6.53	6.27
Merged-chr14-79533888-2	chr14	79533787	79533987	+	764.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	18213.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	10.09	7.8	2.28	4.02	8.18	4.08	5.98	7.85	6.88	8.54	8.54	3.45
Merged-chr13-41572200-3	chr13	41572108	41572308	+	764.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34008.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	10.09	11.07	3.42	8.04	4.91	6.59	3.32	8.3	12.59	15.57	10.55	10.34
Merged-chr3-43218949-2	chr3	43218861	43219061	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1476343.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	1.21	2.01	1.71	0.8	4.09	6.59	9.3	10.54	13.37	4.52	9.55	5.64
Merged-chr5-134507509-3	chr5	134507401	134507601	+	764.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009990, intron 8 of 16)	B3A|SINE|B2	44933.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	14.54	6.54	7.99	12.07	17.18	9.41	11.29	10.07	12.0	9.54	15.07	11.28
Merged-chr16-90070755-3	chr16	90070653	90070853	+	764.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71484.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	3.23	10.56	9.7	8.45	12.68	16.93	8.3	21.03	17.11	13.05	16.58	6.27
Merged-chr4-101174548-3	chr4	101174454	101174654	+	764.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 9 of 24)	intron (NM_146145, intron 9 of 24)	90728.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	16.15	7.04	12.55	15.69	11.86	8.78	7.31	13.18	9.05	6.53	18.59	4.7
Merged-chr11-89090584-1	chr11	89090484	89090684	+	764.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 3 of 3)	intron (NM_001033266, intron 3 of 3)	16743.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.37	12.05	14.07	15.66
Merged-chr17-33637690-3	chr17	33637591	33637791	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	-365.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	12.11	13.33	9.7	4.02	25.77	28.22	4.32	6.28	10.82	14.06	5.53	7.83
Merged-chr8-121104244-3	chr8	121104144	121104344	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4135.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	10.09	3.02	7.42	10.86	4.91	12.54	3.65	7.91	23.01	12.05	9.55	11.9
Merged-chr3-90251168-3	chr3	90251101	90251301	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013901, intron 3 of 3)	intron (NM_013901, intron 3 of 3)	-2657.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	3.63	6.54	2.28	2.82	2.45	4.7	2.66	6.39	15.93	2.01	5.53	7.83
Merged-chr7-78791686-3	chr7	78791569	78791769	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153793, intron 4 of 5)	intron (NR_153793, intron 4 of 5)	8538.0	NM_001360702	67994.0	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873|MRP-S11|S11mt	mitochondrial ribosomal protein S11	protein-coding	7.27	9.81	3.42	6.84	4.5	14.11	4.65	9.25	12.78	14.06	12.56	5.01
Merged-chr19-6665458-3	chr19	6665331	6665531	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122361.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	9.69	8.05	21.68	9.25	12.27	2.51	12.29	12.03	8.65	9.04	4.02	7.83
Merged-chr12-33010194-1	chr12	33010094	33010294	+	764.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56008.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	2.02	5.28	1.14	4.42	8.18	7.53	6.64	8.55	5.11	4.52	9.04	10.34
Merged-chr1-170937258-2	chr1	170937153	170937353	+	764.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-9670.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	1.62	2.52	5.13	4.02	12.68	5.96	9.3	26.3	2.75	10.54	7.54	8.77
Merged-chr2-27711019-2	chr2	27710828	27711028	+	764.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	345.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.42	1.51	0.0	2.01	1.23	1.25	1.0	1.15	3.34	4.02	3.01	3.76
Merged-chr13-81051713-3	chr13	81051616	81051816	+	764.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	87642.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.08	5.53	7.99	13.67	9.0	9.41	15.61	14.55	6.1	8.54	13.06	8.46
Merged-chr6-83774965-2	chr6	83774874	83775074	+	764.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009357, intron 2 of 5)	intron (NM_009357, intron 2 of 5)	838.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	8.08	3.52	5.7	6.03	9.0	13.17	5.31	8.05	7.08	5.02	6.03	6.58
Merged-chr8-95419292-2	chr8	95419193	95419393	+	764.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008187)	TTS (NM_008187)	15576.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	10.9	19.62	19.4	10.05	14.73	5.64	3.32	12.48	7.47	4.02	6.03	4.7
Merged-chr2-13538897-2	chr2	13538794	13538994	+	764.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	5770.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	4.04	10.06	6.28	4.42	9.0	15.68	7.64	7.12	8.06	10.04	20.1	6.89
Merged-chr4-128734447-2	chr4	128734344	128734544	+	764.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6873.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	17.36	7.29	6.28	10.46	6.55	2.82	15.28	12.73	3.54	3.01	7.03	7.52
Merged-chr5-23617114-2	chr5	23617004	23617204	+	764.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-533.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	7.27	3.02	7.99	16.09	9.41	8.47	6.64	10.01	12.39	3.51	5.53	8.14
Merged-chr10-21502543-2	chr10	21502427	21502627	+	764.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90618.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	12.11	5.79	13.12	15.28	9.0	7.21	6.98	17.02	13.77	6.53	6.03	4.39
Merged-chr14-46808124-3	chr14	46808039	46808239	+	764.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022023)	TTS (NM_022023)	14103.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	2.42	7.8	7.99	6.03	13.91	12.54	9.63	12.84	12.39	12.55	11.05	10.34
Merged-chr9-114978466-3	chr9	114978370	114978570	+	764.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-44483.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	10.09	7.8	3.42	8.85	10.64	2.51	8.64	10.74	4.72	11.55	18.09	5.64
Merged-chr7-120865276-2	chr7	120865148	120865348	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	14059.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	10.9	5.28	2.28	7.24	8.18	6.59	4.32	8.61	4.72	1.0	3.52	2.82
Merged-chr13-54219008-2	chr13	54218921	54219121	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26888.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	8.08	5.03	9.7	5.23	4.91	5.33	0.0	9.25	11.41	1.0	9.55	5.01
Merged-chr1-156010216-1	chr1	156010116	156010316	+	764.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 6 of 6)	MTB|LTR|ERVL-MaLR	24601.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	7.27	5.03	6.28	3.22	3.68	2.51	1.99	0.39	11.41	9.04	10.55	11.28
Merged-chr6-57851335-3	chr6	57851220	57851420	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6863.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	15.75	6.29	10.27	6.03	6.95	11.6	5.98	5.78	14.75	12.55	5.53	5.95
Merged-chr11-121057007-3	chr11	121056852	121057052	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026907, intron 2 of 4)	MT2A|LTR|ERVL	6617.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	8.88	10.56	10.27	4.42	11.05	9.41	6.98	7.49	5.31	5.02	7.54	6.27
Merged-chr1-59634161-1	chr1	59634061	59634261	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357842, exon 18 of 19)	exon (NM_001357842, exon 18 of 19)	36673.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	1.62	3.77	5.7	6.44	4.91	3.14	5.65	7.88	5.11	3.51	3.52	2.82
Merged-chr8-94205926-3	chr8	94205807	94206007	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8657.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	7.27	9.81	12.55	5.23	8.18	13.17	11.96	9.64	13.37	19.58	23.62	10.96
Merged-chr15-96722468-2	chr15	96722365	96722565	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_Mus|LTR|ERVK	-22737.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.42	6.79	7.99	5.63	5.73	6.9	1.99	5.38	21.05	22.09	20.6	7.83
Merged-chr1-143997519-2	chr1	143997416	143997616	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6633.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	23.02	11.07	11.41	13.67	21.68	13.8	4.98	6.11	4.33	6.53	5.02	4.39
Merged-chr6-82740417-1	chr6	82740317	82740517	+	764.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 7 of 17)	intron (NM_013820, intron 7 of 17)	34037.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.63	3.52	1.71	1.21	4.5	7.53	4.32	3.93	30.88	26.61	11.05	9.08
Merged-chr10-67378019-1	chr10	67377919	67378119	+	764.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92738.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	1.21	3.02	5.7	4.83	6.95	6.9	5.31	2.97	16.33	17.07	7.54	6.27
Merged-chr9-75049297-2	chr9	75049209	75049409	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	11577.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	2.83	6.29	3.99	6.44	11.45	5.33	11.29	9.59	9.24	9.04	15.07	4.07
Merged-chr5-62842987-2	chr5	62842887	62843087	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001170705, exon 6 of 9)	exon (NM_001170705, exon 6 of 9)	29164.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.83	2.52	13.69	12.47	13.5	2.82	16.61	7.96	12.39	3.51	8.54	4.7
Merged-chr17-52712484-1	chr17	52712384	52712584	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	109775.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	2.42	2.01	0.57	0.0	4.91	3.45	6.98	7.35	3.93	1.0	9.55	2.82
Merged-chr15-57762367-2	chr15	57762269	57762469	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67702.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.23	5.53	4.56	9.65	9.82	6.59	5.31	7.85	9.64	2.51	7.54	9.08
Merged-chr1-128743623-1	chr1	128743523	128743723	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-151324.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.83	3.27	2.28	3.62	6.55	6.27	9.3	7.88	3.93	3.01	4.52	2.51
Merged-chr9-9684225-2	chr9	9684129	9684329	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 17 of 20)	intron (NM_001033359, intron 17 of 20)	-210202.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	2.83	7.04	5.7	7.24	9.0	7.53	3.65	13.57	13.18	11.05	15.07	6.58
Merged-chr6-117438319-2	chr6	117438204	117438404	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56931.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	7.27	3.77	4.56	11.26	11.45	6.9	9.63	12.95	7.67	4.52	12.56	5.64
Merged-chr2-84634337-3	chr2	84634279	84634479	+	764.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	PB1D7|SINE|Alu	15101.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.67	6.79	7.99	12.47	11.45	14.74	4.98	9.81	8.26	4.02	8.54	8.46
Merged-chr13-97239729-3	chr13	97239651	97239851	+	764.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1354.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	6.46	9.81	4.56	17.29	8.59	8.47	6.98	10.93	11.21	7.53	16.08	7.52
Merged-chr3-144628855-3	chr3	144628752	144628952	+	764.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58425.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.65	7.8	7.42	9.25	11.05	15.37	27.57	20.97	9.64	6.03	14.57	10.96
Merged-chr1-165769271-3	chr1	165769147	165769347	+	764.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	5489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	7.67	7.55	5.7	4.02	3.68	20.38	5.31	5.66	9.64	10.04	6.53	5.64
Merged-chr8-46936239-3	chr8	46936136	46936336	+	764.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50651.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	10.5	11.82	6.28	10.05	12.68	15.37	19.93	9.42	9.64	10.54	7.03	6.89
Merged-chr3-88771577-3	chr3	88771502	88771702	+	764.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018804, intron 1 of 3)	intron (NM_018804, intron 1 of 3)	997.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	9.69	10.82	11.98	8.45	14.73	15.99	10.63	1.68	12.78	21.59	9.55	8.77
Merged-chr11-43451485-2	chr11	43451386	43451586	+	764.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	17755.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	4.85	4.02	3.42	6.03	6.95	10.98	6.98	13.71	8.06	8.54	12.06	7.83
Merged-chr2-168570144-2	chr2	168570058	168570258	+	764.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291173, intron 1 of 8)	intron (NM_001291173, intron 1 of 8)	20207.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.06	8.05	7.42	8.85	5.32	10.03	12.95	11.05	2.95	0.5	6.03	2.82
Merged-chr12-29713491-2	chr12	29713391	29713591	+	764.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-27046.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	1.62	1.26	0.0	2.41	13.5	4.08	3.99	6.34	25.37	22.09	17.08	10.02
Merged-chr4-99270160-2	chr4	99270051	99270251	+	764.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76004.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	8.08	12.83	4.56	1.61	3.27	13.48	3.32	4.35	19.67	13.56	33.67	11.28
Merged-chr7-64404191-1	chr7	64404091	64404291	+	764.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	11569.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	1.21	0.0	11.98	2.41	8.59	6.9	11.29	14.61	2.56	4.52	5.53	9.08
Merged-chr6-8001268-1	chr6	8001168	8001368	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	156044.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	5.65	13.83	3.42	11.26	2.45	3.76	6.31	3.36	2.95	3.01	2.01	0.63
Merged-chr9-64143363-3	chr9	64143260	64143460	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026507, intron 17 of 18)	MTE2a|LTR|ERVL-MaLR	26213.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	14.13	5.03	11.41	8.04	12.68	3.45	8.64	11.72	14.36	10.04	13.06	5.95
Merged-chr5-33443233-1	chr5	33443133	33443333	+	764.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-9143.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	8.08	2.52	6.28	0.0	3.68	5.64	3.32	3.56	3.15	5.02	4.02	6.89
Merged-chr11-59633259-1	chr11	59633159	59633359	+	764.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	20293.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	6.86	5.79	1.14	5.63	4.91	4.7	2.99	4.68	12.19	7.53	14.57	9.4
Merged-chr4-44182595-3	chr4	44182482	44182682	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14299.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	8.88	5.03	12.55	13.67	9.0	5.96	5.98	13.12	9.44	2.01	13.57	7.83
Merged-chr16-75593931-3	chr16	75593792	75593992	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	1001.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	5.25	9.06	11.98	6.03	1.23	5.64	8.3	10.49	11.01	11.55	11.05	3.76
Merged-chr11-76482820-3	chr11	76482718	76482918	+	764.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11677.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.67	14.34	12.55	1.61	16.77	11.29	7.31	10.93	18.49	17.57	10.05	7.21
Merged-chr3-9250709-3	chr3	9250618	9250818	+	764.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177660, exon 1 of 6)	5' UTR (NM_177660, exon 1 of 6)	151.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	15.34	17.36	13.12	15.28	17.18	7.21	12.95	7.74	10.42	7.53	8.04	6.89
Merged-chr2-92056174-3	chr2	92056063	92056263	+	764.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31993.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	9.29	5.53	3.99	8.45	8.18	11.29	2.33	6.95	13.37	13.56	15.07	12.84
Merged-chr15-59392091-2	chr15	59392019	59392219	+	764.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	17921.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.46	7.55	7.42	14.88	8.59	3.76	11.63	12.64	4.72	8.03	7.54	5.33
Merged-chr3-9865035-3	chr3	9864953	9865153	+	764.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-31374.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	9.69	7.55	17.11	24.13	13.09	9.41	17.27	27.48	10.62	8.54	22.11	7.21
Merged-chr15-81027846-2	chr15	81027757	81027957	+	764.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	50092.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	6.86	5.79	7.42	2.82	4.09	10.03	3.65	6.76	12.98	5.02	11.05	5.33
Merged-chr2-73487804-2	chr2	73487704	73487904	+	764.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-2051.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.44	10.06	11.98	4.83	8.18	11.29	1.66	7.93	13.18	8.03	5.02	5.01
Merged-chr17-3079408-2	chr17	3079285	3079485	+	764.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_003519, exon 3 of 8)	non-coding (NR_003519, exon 3 of 8)	4798.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	9.29	9.31	6.85	6.84	7.77	6.59	6.98	16.21	3.93	0.0	0.0	2.19
Merged-chr4-11489230-3	chr4	11489132	11489332	+	764.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081183, intron 1 of 24)	intron (NM_001081183, intron 1 of 24)	3274.0	NM_001347055	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	6.86	10.31	21.11	11.66	8.59	8.78	9.3	10.65	9.64	6.53	12.06	6.58
Merged-chr6-28319280-3	chr6	28319159	28319359	+	764.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57658.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	8.08	5.28	9.13	2.82	7.36	6.27	8.97	7.99	13.57	12.05	13.57	12.53
Merged-chr11-54626351-3	chr11	54626240	54626440	+	764.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 10 of 28)	intron (NM_001252494, intron 10 of 28)	30194.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	10.09	3.52	13.69	7.64	2.45	7.53	5.31	6.64	10.23	9.04	13.57	6.89
Merged-chr7-43283359-3	chr7	43283259	43283459	+	764.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29941.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	12.92	5.79	5.7	5.63	11.45	4.39	3.32	8.38	12.0	7.53	17.08	11.9
Merged-chr12-111165305-3	chr12	111165197	111165397	+	764.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1073.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	8.08	9.31	14.26	5.23	5.73	14.42	3.99	5.92	13.37	12.55	27.13	11.28
Merged-chr19-32952578-2	chr19	32952473	32952673	+	764.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	194996.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.04	5.79	0.0	0.0	10.64	14.74	4.98	7.26	14.95	15.06	16.08	7.52
Merged-chr10-24142947-3	chr10	24142878	24143078	+	764.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6311.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	11.71	5.79	2.85	7.24	15.55	10.35	12.95	12.87	20.06	5.02	14.07	10.34
Merged-chr17-34556432-2	chr17	34556314	34556514	+	764.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7881.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	4.04	2.01	3.99	4.83	4.09	6.59	6.31	10.85	11.8	9.54	8.04	11.9
Merged-chr2-30135425-2	chr2	30135323	30135523	+	764.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1677.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	4.04	2.01	6.28	6.44	7.77	8.15	5.98	9.45	16.52	12.05	16.08	9.08
Merged-chr7-127026277-5	chr7	127026062	127026262	+	764.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010772, intron 1 of 4)	intron (NM_010772, intron 1 of 4)	317.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	10.9	8.8	10.84	3.62	1.64	3.76	4.65	6.42	8.06	10.54	7.03	9.08
Merged-chr3-121841100-3	chr3	121840997	121841197	+	764.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18A_MM|LTR|ERVK	-25795.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	6.06	4.53	10.84	3.22	9.0	3.76	8.97	11.27	23.8	17.07	19.09	8.46
Merged-chr15-34541182-3	chr15	34541068	34541268	+	764.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45857.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	12.52	7.8	9.7	6.03	27.82	1.88	2.66	9.06	10.42	11.05	9.04	3.13
Merged-chr7-78890815-3	chr7	78890694	78890894	+	764.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2517.0	NR_029826	723884.0		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	15.34	13.33	8.56	11.26	10.23	14.11	5.98	16.37	12.59	11.55	10.05	8.77
Merged-chr5-8081356-3	chr5	8081256	8081456	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310439, intron 29 of 29)	intron (NM_001310439, intron 29 of 29)	24814.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	6.06	4.53	15.97	12.47	6.95	12.23	9.3	21.22	9.64	8.03	16.58	7.52
Merged-chr17-51478031-1	chr17	51477931	51478131	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29762.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	1.62	1.26	0.57	5.23	1.64	8.78	7.31	5.83	1.97	1.51	6.03	3.45
Merged-chr15-58890689-1	chr15	58890589	58890789	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175151, exon 12 of 12)	3' UTR (NM_175151, exon 12 of 12)	1460.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.81	5.53	3.42	8.04	3.68	6.59	1.33	5.8	7.47	4.02	3.52	6.27
Merged-chr11-4083557-1	chr11	4083457	4083657	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11874.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	2.83	5.28	7.99	4.42	5.32	9.09	4.65	7.65	14.36	10.04	8.04	3.13
Merged-chr2-157371517-1	chr2	157371417	157371617	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	ID_B1|SINE|B4	3923.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	4.04	6.29	5.7	6.03	4.5	5.64	3.99	7.46	2.36	2.51	6.03	8.77
Merged-chr6-143220760-1	chr6	143220660	143220860	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25128.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	1.21	2.01	12.55	5.23	5.73	5.96	4.65	10.65	10.23	3.51	14.57	7.52
Merged-chr4-35034866-1	chr4	35034766	35034966	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-117189.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	1.21	3.52	1.14	4.42	1.64	10.98	5.65	7.26	5.7	5.52	1.51	0.31
Merged-chr14-58319394-1	chr14	58319294	58319494	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	246708.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.44	1.51	1.71	5.23	7.77	3.45	4.98	7.01	6.88	5.02	3.01	0.63
Merged-chr7-138827974-1	chr7	138827874	138828074	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18293.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	7.67	2.01	4.56	8.45	2.45	5.64	4.32	7.88	7.28	7.53	5.02	5.95
Merged-chr18-83932702-1	chr18	83932602	83932802	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153860.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.44	1.01	9.7	0.8	7.77	3.76	9.3	8.41	8.26	2.51	5.53	8.14
Merged-chr17-5668446-1	chr17	5668346	5668546	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 2 of 8)	MTB|LTR|ERVL-MaLR	-130211.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.42	1.01	5.7	0.0	4.09	15.37	7.64	1.54	1.77	5.02	3.01	4.7
Merged-chr2-73572608-2	chr2	73572511	73572711	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007389, intron 4 of 8)	intron (NM_007389, intron 4 of 8)	7727.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	5.25	7.8	1.14	0.4	3.68	7.53	8.64	8.44	7.87	7.03	15.07	9.71
Merged-chr13-118715229-1	chr13	118715129	118715329	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008002, exon 1 of 3)	5' UTR (NM_008002, exon 1 of 3)	530.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	4.04	5.28	0.0	8.04	2.05	1.88	5.98	6.25	0.79	0.0	2.51	2.19
Merged-chr6-141048455-1	chr6	141048355	141048555	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-200814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	5.65	2.01	3.99	5.23	6.14	2.82	3.99	6.36	3.34	2.51	5.53	3.76
Merged-chr14-121598853-1	chr14	121598753	121598953	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-93599.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	5.25	6.54	3.42	11.66	6.55	3.14	7.64	7.57	0.98	2.51	0.5	1.88
Merged-chr7-66136437-1	chr7	66136337	66136537	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26922.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.25	0.75	1.14	0.0	10.23	6.27	6.64	14.72	3.54	10.54	10.05	5.64
Merged-chr3-149323432-1	chr3	149323332	149323532	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48695.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.04	1.26	0.0	10.46	0.0	7.21	2.66	10.29	5.31	5.02	8.54	2.82
Merged-chr2-29054103-1	chr2	29054003	29054203	+	764.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	963.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	6.46	5.03	6.85	0.4	4.5	1.25	0.66	2.92	8.85	6.03	5.02	3.13
Merged-chr11-76605333-1	chr11	76605233	76605433	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27594.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.04	8.55	0.57	3.62	6.14	6.9	3.32	7.01	5.51	9.54	5.02	2.51
Merged-chr6-143316008-1	chr6	143315908	143316108	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70120.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	4.85	2.01	5.7	4.83	4.91	3.14	5.65	7.35	9.83	4.02	4.52	5.95
Merged-chr5-109552316-2	chr5	109552304	109552504	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6589.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.25	4.02	3.99	1.21	4.5	2.82	1.66	0.64	2.36	5.02	3.52	5.95
Merged-chr13-101743482-1	chr13	101743382	101743582	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	B4|SINE|B4	24735.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.27	8.3	2.85	2.01	2.86	5.33	0.66	2.92	6.49	4.02	8.54	1.88
Merged-chr10-8520696-3	chr10	8520593	8520793	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1868.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.65	11.07	1.14	9.65	16.77	10.35	10.3	18.31	6.49	10.54	8.04	7.52
Merged-chr3-52029359-1	chr3	52029259	52029459	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75647.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.42	5.03	2.28	8.85	3.27	7.84	5.98	5.41	5.31	1.0	3.01	2.51
Merged-chr12-3854740-1	chr12	3854640	3854840	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	7504.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	1.21	2.52	6.85	6.84	6.14	1.88	8.3	6.31	4.13	9.54	9.55	7.83
Merged-chr3-127294985-1	chr3	127294885	127295085	+	764.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	114073.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.23	1.51	3.42	1.61	1.64	1.25	3.99	1.85	9.24	4.02	6.03	10.96
Merged-chr11-19021489-1	chr11	19021389	19021589	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2520.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	1.62	1.51	2.85	6.03	2.45	6.9	5.65	6.84	1.38	8.03	6.53	7.21
Merged-chr3-89831391-1	chr3	89831291	89831491	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172530)	promoter-TSS (NM_172530)	21.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.23	2.01	6.85	4.02	3.68	6.59	6.64	3.79	6.29	1.0	4.02	5.64
Merged-chr9-72467730-1	chr9	72467630	72467830	+	764.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	24229.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	5.65	4.02	3.99	3.22	5.32	3.45	2.66	1.43	13.37	11.55	20.1	10.65
Merged-chr19-6275307-3	chr19	6275218	6275418	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1578.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	9.69	9.81	5.13	2.82	8.59	6.9	0.66	4.6	20.06	12.55	10.05	6.27
Merged-chr3-107036103-3	chr3	107036024	107036224	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008418)	promoter-TSS (NM_008418)	-38.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	4.85	8.3	10.27	10.86	17.18	6.9	11.63	11.86	10.23	10.54	13.57	5.95
Merged-chr5-16470506-1	chr5	16470406	16470606	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82989.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.86	4.78	1.14	10.05	4.91	6.27	9.63	7.65	0.59	6.53	3.01	5.01
Merged-chr17-84285202-1	chr17	84285102	84285302	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-97255.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.83	6.29	5.13	2.01	9.41	5.96	4.98	8.86	3.54	4.02	12.06	6.27
Merged-chr17-35264030-1	chr17	35263930	35264130	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010380, exon 3 of 8)	exon (NM_010380, exon 3 of 8)	907.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	4.44	6.04	4.56	3.62	6.95	5.02	9.3	8.21	22.62	15.06	20.6	13.78
Merged-chr9-113805160-1	chr9	113805060	113805260	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7426.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.85	4.53	2.85	4.83	2.45	8.15	1.0	5.83	3.74	4.52	4.02	4.07
Merged-chr19-47508133-2	chr19	47507987	47508187	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4895.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	9.29	8.8	5.13	6.03	11.05	8.47	2.33	9.06	6.29	4.52	4.02	3.13
Merged-chr9-78150007-3	chr9	78149909	78150109	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163780, intron 5 of 13)	intron (NM_001163780, intron 5 of 13)	-25905.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	12.92	7.29	6.28	6.03	11.86	10.35	4.98	4.12	27.34	15.06	11.56	19.11
Merged-chr7-90024400-1	chr7	90024300	90024500	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4759.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.44	2.26	2.85	6.03	6.14	6.59	4.32	4.23	6.1	3.01	9.04	5.33
Merged-chr13-58127430-2	chr13	58127334	58127534	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	1122.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	12.11	4.53	13.69	4.83	4.5	6.27	9.63	6.84	9.05	10.54	8.04	9.4
Merged-chr12-13358988-3	chr12	13358909	13359109	+	763.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027706, intron 23 of 51)	intron (NM_027706, intron 23 of 51)	89882.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	12.11	7.8	12.55	6.84	9.41	9.72	8.3	20.33	7.87	9.54	15.07	9.08
Merged-chr17-37050105-3	chr17	37050012	37050212	+	763.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019439, intron 5 of 22)	intron (NM_019439, intron 5 of 22)	4146.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	11.71	22.89	13.69	10.46	9.82	8.47	7.31	8.3	10.03	10.04	10.05	11.9
Merged-chr12-95738347-3	chr12	95738243	95738443	+	763.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	46117.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	7.67	10.06	9.13	10.86	4.5	7.84	8.64	8.07	11.21	2.01	12.06	4.39
Merged-chr7-44836140-3	chr7	44836043	44836243	+	763.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-145.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	7.67	7.8	1.14	7.64	11.86	17.25	0.0	4.46	16.33	6.03	4.52	9.4
Merged-chr3-104518625-2	chr3	104518516	104518716	+	763.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6698.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	13.33	8.55	4.56	6.84	6.95	12.23	7.64	13.18	4.13	5.52	11.56	4.07
Merged-chr11-19024665-2	chr11	19024562	19024762	+	763.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5693.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	8.88	9.81	9.7	4.83	10.23	7.21	9.3	13.51	14.55	8.54	11.05	5.01
Merged-chr9-31130085-3	chr9	31129996	31130196	+	763.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1703.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	18.98	9.06	10.27	8.04	19.23	10.66	7.97	13.65	12.39	12.05	20.1	15.04
Merged-chr6-47175788-3	chr6	47175699	47175899	+	763.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68597.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	6.86	6.04	15.97	8.85	7.36	8.78	11.29	7.21	12.0	9.54	16.08	9.71
Merged-chr16-4723493-2	chr16	4723386	4723586	+	763.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.44	4.78	9.7	6.84	15.55	4.39	9.3	9.93	10.62	5.52	13.57	6.89
Merged-chr6-120056342-2	chr6	120056236	120056436	+	763.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17681.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	4.04	5.79	6.85	4.83	10.64	3.76	11.29	6.67	12.78	8.54	11.05	4.7
Merged-chr6-37592540-2	chr6	37592450	37592650	+	763.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62377.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	1.21	3.02	2.85	3.62	16.36	10.66	11.29	7.21	18.1	12.05	12.56	12.53
Merged-chr7-43310620-2	chr7	43310516	43310716	+	763.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	2684.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	7.27	7.8	19.4	13.67	13.5	10.35	11.63	29.61	18.1	7.53	7.54	6.58
Merged-chr11-3289383-3	chr11	3289312	3289512	+	763.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045108, intron 1 of 5)	CpG	281.0	NR_045109	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	7.27	6.54	4.56	8.45	7.36	6.9	7.64	9.95	11.41	8.54	5.53	10.96
Merged-chr18-82840519-3	chr18	82840410	82840610	+	763.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-15387.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	9.69	5.03	10.27	11.66	15.96	13.17	8.64	10.77	13.57	13.56	13.57	8.46
Merged-chr19-10177298-2	chr19	10177186	10177386	+	763.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-5602.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	3.23	4.78	3.42	4.42	9.0	23.2	8.64	8.05	11.6	13.05	4.02	1.57
Merged-chr18-24215082-3	chr18	24214970	24215170	+	763.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	L1MDa|LINE|L1	9076.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	8.88	13.08	10.27	6.03	13.09	10.98	12.62	14.33	11.8	5.02	9.55	2.82
Merged-chr1-165679777-1	chr1	165679677	165679877	+	763.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	28317.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	9.29	3.77	3.99	4.02	8.18	11.6	5.98	1.77	6.69	6.53	1.0	1.57
Merged-chr11-115696783-2	chr11	115696674	115696874	+	763.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	2760.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.44	4.02	17.68	4.83	8.59	3.76	2.33	6.87	10.42	15.57	4.02	9.08
Merged-chr1-184808102-5	chr1	184808090	184808290	+	763.723328	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290273, intron 1 of 6)	MTD|LTR|ERVL-MaLR	3110.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	3.23	7.8	5.7	3.62	2.05	5.96	7.31	6.11	3.93	3.01	5.02	6.58
Merged-chr18-62972934-3	chr18	62972842	62973042	+	763.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4974.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	8.08	8.3	9.13	4.83	18.41	17.87	7.31	10.23	10.82	9.04	16.08	13.16
Merged-chr2-163919040-3	chr2	163918951	163919151	+	763.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	-368.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	6.86	7.55	2.85	10.86	8.18	10.35	10.3	21.03	9.44	4.02	14.57	6.89
Merged-chr17-51044053-1	chr17	51043953	51044153	+	763.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	115325.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.86	5.53	4.56	10.86	5.73	5.64	4.65	17.72	16.92	5.02	12.56	8.14
Merged-chr14-65884982-1	chr14	65884882	65885082	+	763.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47680.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	3.23	1.51	6.85	2.41	0.82	2.2	0.0	2.24	13.96	10.54	15.07	5.01
Merged-chr10-122685475-2	chr10	122685379	122685579	+	763.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	6164.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	1.62	2.01	2.28	7.64	5.32	9.09	9.63	9.84	6.1	9.04	12.56	9.4
Merged-chr6-113045624-2	chr6	113045545	113045745	+	763.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-657.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	12.92	4.53	1.14	2.82	12.27	7.21	2.66	10.68	8.06	8.54	12.06	10.34
Merged-chr12-70347415-2	chr12	70347310	70347510	+	763.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001286387, exon 1 of 14)	5' UTR (NM_001286387, exon 1 of 14)	204.0	NM_001286386	94090.0	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	4.44	5.79	2.28	8.04	2.86	10.66	7.97	7.37	10.23	5.02	17.59	9.71
Merged-chr15-80711872-3	chr15	80711692	80711892	+	763.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144812, intron 1 of 24)	CpG	479.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	2.42	2.52	6.85	4.83	7.36	5.02	6.31	6.48	13.77	14.56	6.03	7.52
Merged-chr16-45786886-3	chr16	45786783	45786983	+	763.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357078, intron 5 of 16)	intron (NM_001357078, intron 5 of 16)	-43928.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	8.48	9.56	4.56	10.46	11.45	21.32	10.63	11.33	16.33	10.04	18.59	6.58
Merged-chr12-54577461-3	chr12	54577360	54577560	+	763.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	68552.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	5.65	7.55	15.97	9.65	7.36	12.23	4.65	14.75	14.16	13.05	18.09	15.04
Merged-chr9-94672753-3	chr9	94672647	94672847	+	763.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	2855.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	16.96	7.55	11.98	7.64	15.14	13.48	10.3	14.44	12.59	20.08	17.08	2.82
Merged-chr19-29431644-2	chr19	29431550	29431750	+	763.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	20731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	2.83	3.27	8.56	3.62	6.95	9.41	4.98	6.0	11.21	11.55	9.55	7.21
Merged-chr4-122995589-3	chr4	122995492	122995692	+	763.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303121)	promoter-TSS (NM_001303121)	-339.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	12.11	8.55	5.13	10.86	6.95	13.17	8.64	8.92	7.87	7.53	13.06	9.4
Merged-chr12-70476388-3	chr12	70476274	70476474	+	763.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23220.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	8.88	4.78	5.13	6.84	6.55	7.53	2.66	6.62	12.98	13.05	17.08	4.7
Merged-chr7-100434040-3	chr7	100433946	100434146	+	763.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38945.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	11.31	10.06	13.12	8.85	20.86	14.11	10.3	13.54	10.42	14.56	19.09	9.71
Merged-chr10-91209475-1	chr10	91209375	91209575	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	11144.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	1.62	5.79	1.14	2.01	12.68	15.68	3.65	7.46	11.21	15.06	2.51	4.39
Merged-chr14-73473768-2	chr14	73473666	73473866	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-36283.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	8.48	4.28	1.71	3.22	4.09	3.76	3.99	7.29	10.82	7.03	3.52	8.46
Merged-chr1-176836122-2	chr1	176836013	176836213	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037996)	promoter-TSS (NR_037996)	20.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	4.44	7.29	4.56	4.42	6.55	2.82	8.97	6.64	9.64	11.05	10.55	5.95
Merged-chr11-88070647-1	chr11	88070547	88070747	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016686, intron 1 of 5)	intron (NM_016686, intron 1 of 5)	2368.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	2.83	5.03	4.56	4.42	6.95	8.78	2.99	7.91	7.08	6.03	8.54	8.14
Merged-chr15-25546284-1	chr15	25546184	25546384	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76266.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.23	2.26	0.57	2.41	5.32	5.33	2.33	7.09	3.54	4.02	8.54	1.88
Merged-chr2-11568147-2	chr2	11568045	11568245	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-14216.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.02	7.29	7.99	4.02	9.41	5.64	11.29	8.19	12.19	11.05	9.55	11.9
Merged-chr13-20098148-2	chr13	20098045	20098245	+	763.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	7638.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.48	11.07	21.68	8.04	9.82	10.66	9.3	17.72	4.13	4.52	5.02	4.7
Merged-chr1-171567004-2	chr1	171566901	171567101	+	763.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	7808.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	11.71	11.07	6.85	7.24	7.77	10.98	3.65	5.86	8.65	4.02	7.03	2.82
Merged-chr11-90240397-1	chr11	90240297	90240497	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9079.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.63	3.02	4.56	3.62	14.73	11.92	10.63	7.32	4.33	14.06	3.52	2.51
Merged-chr3-15012517-1	chr3	15012417	15012617	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41316.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	3.63	3.02	2.28	4.02	11.05	1.57	5.31	5.41	1.38	1.0	6.53	3.13
Merged-chr15-25533351-2	chr15	25533247	25533447	+	763.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89203.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	12.11	5.28	7.99	7.24	4.09	12.54	13.62	11.69	8.46	6.03	5.53	4.39
Merged-chr6-124756842-3	chr6	124756765	124756965	+	763.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-378.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	8.88	8.8	17.11	13.27	10.23	11.6	7.97	11.89	9.64	14.06	7.54	13.47
Merged-chr17-10874500-5	chr17	10874442	10874642	+	763.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	34183.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	2.02	3.02	2.28	6.03	5.73	5.64	3.99	2.89	4.72	7.03	11.05	8.77
Merged-chr11-95713485-3	chr11	95713383	95713583	+	763.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-729.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	10.5	9.81	2.28	7.24	6.55	3.14	8.97	7.21	10.23	10.54	15.07	8.77
Merged-chr7-27325876-3	chr7	27325768	27325968	+	763.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113549, intron 11 of 29)	intron (NM_001113549, intron 11 of 29)	7780.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	6.06	8.05	11.98	9.65	8.18	12.54	12.95	11.69	9.24	8.03	11.05	6.27
Merged-chr6-22409094-3	chr6	22409004	22409204	+	763.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53023.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	8.08	6.79	8.56	10.86	6.55	8.47	14.95	13.93	4.13	14.06	8.54	3.13
Merged-chr4-149120116-1	chr4	149120016	149120216	+	763.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104263, exon 4 of 4)	non-coding (NR_104263, exon 4 of 4)	6647.0	NM_007745	12854.0	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	4.44	6.54	3.99	7.24	1.64	4.7	5.65	2.3	20.65	12.55	12.56	9.71
Merged-chr9-103229392-3	chr9	103229404	103229604	+	763.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	782.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	4.85	6.54	5.7	4.02	2.45	5.02	9.3	9.7	3.34	3.01	3.01	6.27
Merged-chr13-55640669-3	chr13	55640574	55640774	+	763.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282055, intron 3 of 22)	B3A|SINE|B2	5675.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	14.94	12.07	9.7	7.64	6.95	9.09	2.33	9.67	9.83	6.53	10.05	8.77
Merged-chr15-25858255-3	chr15	25858160	25858360	+	763.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	14962.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	10.09	4.02	8.56	7.24	13.91	12.54	9.63	18.28	9.83	7.03	11.56	7.52
Merged-chr4-125962865-3	chr4	125962776	125962976	+	763.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40566.0	NR_015560	72395.0	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	26.25	27.42	18.83	6.44	14.73	13.8	7.31	6.73	12.39	22.09	7.54	2.82
Merged-chr3-108164919-3	chr3	108164818	108165018	+	763.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9986.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	11.71	6.29	6.85	9.25	10.23	7.21	2.33	8.16	14.16	14.56	15.58	14.72
Merged-chr4-129276649-3	chr4	129276548	129276748	+	763.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10973.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	11.31	8.55	3.42	2.41	11.45	8.78	2.99	7.51	22.23	13.05	19.09	9.4
Merged-chr19-46369370-3	chr19	46369274	46369474	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029186, intron 6 of 8)	intron (NM_029186, intron 6 of 8)	12494.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	16.56	9.31	13.12	14.08	13.91	12.23	7.64	15.08	10.03	4.52	13.06	13.16
Merged-chr10-58405567-1	chr10	58405467	58405667	+	763.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	11194.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.04	6.79	5.13	2.82	9.41	10.03	4.32	7.88	6.69	4.02	9.55	6.27
Merged-chr6-50223183-1	chr6	50223083	50223283	+	763.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018769, intron 5 of 9)	ORR1E|LTR|ERVL-MaLR	38586.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	1.62	5.03	6.28	8.45	6.55	5.02	7.64	5.75	3.74	2.01	11.56	5.01
Merged-chr10-71346892-3	chr10	71346790	71346990	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-873.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	12.92	6.29	6.85	17.7	0.82	5.02	6.98	17.47	8.85	6.53	6.53	5.64
Merged-chr14-101559687-3	chr14	101559662	101559862	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	Lx6|LINE|L1	49429.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.02	10.06	3.42	2.82	6.14	3.14	10.63	9.42	3.93	3.51	5.53	7.21
Merged-chr13-94416004-1	chr13	94415904	94416104	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009680, intron 6 of 26)	intron (NM_009680, intron 6 of 26)	57044.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	12.52	14.09	6.85	11.66	0.0	3.14	0.0	1.82	0.0	0.0	0.0	0.0
Merged-chr9-123968750-3	chr9	123968654	123968854	+	763.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009912)	promoter-TSS (NM_009912)	-62.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	12.92	4.02	18.25	8.04	11.05	11.29	10.3	9.81	8.85	7.03	13.57	10.96
Merged-chr4-141246712-2	chr4	141246608	141246808	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172520, intron 3 of 16)	intron (NM_172520, intron 3 of 16)	3824.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	6.86	10.06	1.71	0.8	3.27	9.41	9.63	7.46	11.01	11.55	12.56	8.77
Merged-chr10-118162875-2	chr10	118162792	118162992	+	763.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162904, intron 12 of 14)	intron (NM_001162904, intron 12 of 14)	21105.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.85	7.55	7.42	3.22	9.0	7.84	12.29	12.67	0.39	0.5	0.0	0.63
Merged-chr6-72517728-2	chr6	72517643	72517843	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26648.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	1.21	6.29	7.42	2.41	9.82	5.96	4.65	9.14	7.28	9.04	13.06	11.9
Merged-chr12-11217865-1	chr12	11217765	11217965	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8917.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	4.44	2.01	7.42	3.22	11.45	5.33	6.64	9.62	2.75	0.0	2.01	1.88
Merged-chr9-44082759-2	chr9	44082680	44082880	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198092, intron 2 of 12)	RMER15|LTR|ERVL	-2140.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	8.48	5.79	4.56	4.02	8.59	6.9	3.32	7.51	12.78	4.52	8.04	9.4
Merged-chr2-117945144-1	chr2	117945044	117945244	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	123216.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.65	4.28	12.55	7.64	5.73	6.9	9.97	8.3	3.34	3.51	3.52	3.45
Merged-chr15-103177215-2	chr15	103177106	103177306	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13922.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	16.56	4.28	7.99	6.44	6.55	11.92	10.3	6.06	10.03	15.06	14.57	14.1
Merged-chr6-34016039-3	chr6	34015924	34016124	+	763.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13424.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	7.67	8.8	5.7	9.25	10.23	5.64	7.97	6.84	12.19	7.53	21.1	9.71
Merged-chr14-45632912-3	chr14	45632792	45632992	+	763.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	MTD|LTR|ERVL-MaLR	25161.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	9.69	9.31	5.7	0.8	3.68	8.15	1.0	4.93	15.14	15.57	19.6	5.95
Merged-chr3-142443521-3	chr3	142443420	142443620	+	763.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47824.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.44	5.79	10.84	12.07	9.41	5.96	4.98	11.94	15.14	10.54	13.57	5.95
Merged-chr12-73967318-3	chr12	73967268	73967468	+	763.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178392, intron 1 of 9)	ID_B1|SINE|B4	2838.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	10.9	8.8	2.85	9.65	13.5	8.78	14.95	7.57	7.28	7.03	12.06	8.77
Merged-chr10-86884459-3	chr10	86884367	86884567	+	763.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	105462.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	12.92	5.53	8.56	10.05	11.86	7.21	7.31	13.37	6.1	13.05	19.6	3.13
Merged-chr18-42260042-1	chr18	42259942	42260142	+	763.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	2029.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	2.42	4.28	8.56	2.41	9.0	8.47	7.97	9.03	2.95	1.0	5.53	1.88
Merged-chr9-13742621-1	chr9	13742521	13742721	+	763.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6560.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	6.46	1.26	6.85	9.25	6.95	9.09	6.98	8.94	7.28	4.52	4.02	10.96
Merged-chr12-80230157-3	chr12	80230063	80230263	+	763.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	30208.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	12.11	3.77	5.13	14.08	6.55	9.41	12.95	21.56	10.42	5.52	5.02	7.21
Merged-chr2-163939787-2	chr2	163939685	163939885	+	763.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21102.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	8.08	6.04	11.41	22.93	22.09	10.35	16.61	33.81	3.15	3.01	4.02	0.31
Merged-chr1-53265243-2	chr1	53265115	53265315	+	763.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153556, intron 4 of 12)	intron (NM_153556, intron 4 of 12)	31813.0	NM_153556	227099.0	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	PMS1 homolog 1, mismatch repair system component	protein-coding	7.67	8.05	6.28	5.23	4.09	10.66	6.98	8.72	6.1	13.05	10.05	5.01
Merged-chr17-78264631-4	chr17	78264484	78264684	+	763.15625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	Tigger12A|DNA|TcMar-Tigger	64336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	7.27	5.03	0.0	2.82	8.18	8.78	6.64	4.37	5.51	8.03	5.02	3.45
Merged-chr6-116172646-3	chr6	116172538	116172738	+	763.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	L1VL4|LINE|L1	20736.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.06	6.04	12.55	8.85	14.32	9.72	13.95	3.0	16.72	3.01	11.05	8.14
Merged-chr2-52885044-3	chr2	52884940	52885140	+	763.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	27172.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	11.31	5.28	7.99	8.45	15.96	3.76	12.62	15.42	17.31	12.55	10.05	7.21
Merged-chrX-19157618-2	chrX	19157515	19157715	+	763.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10644.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	6.46	7.8	15.4	9.65	9.0	13.48	12.95	17.05	7.08	12.05	9.55	5.01
Merged-chr15-76871393-2	chr15	76871261	76871461	+	763.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001007568)	promoter-TSS (NM_001007568)	74.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	10.5	4.53	13.12	7.64	9.0	10.35	3.99	7.18	2.16	7.53	5.02	7.52
Merged-chr11-11973562-1	chr11	11973462	11973662	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177629, intron 2 of 15)	intron (NM_001177629, intron 2 of 15)	54409.0	NM_001177629	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	4.04	2.77	2.28	6.84	0.82	3.45	3.32	3.22	11.01	4.02	10.05	1.88
Merged-chr10-78018977-1	chr10	78018877	78019077	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-9170.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	8.08	7.04	3.42	4.83	6.14	7.21	9.97	9.0	5.11	5.52	6.03	5.01
Merged-chr18-52750950-1	chr18	52750850	52751050	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16861.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	5.25	3.27	4.56	6.84	4.09	5.64	6.98	5.55	2.95	3.51	8.04	5.33
Merged-chr10-121426734-1	chr10	121426634	121426834	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	49516.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.02	3.02	2.28	1.61	2.45	3.14	2.33	4.09	7.08	6.53	5.53	11.9
Merged-chr5-121820780-1	chr5	121820680	121820880	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-1507.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	3.63	0.0	0.57	0.8	5.32	9.72	2.66	5.55	4.92	2.01	5.02	1.57
Merged-chr12-75563192-1	chr12	75563092	75563292	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	33008.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	3.63	4.02	2.28	5.63	8.18	2.2	3.65	6.81	5.7	1.51	5.53	3.45
Merged-chr11-106704858-1	chr11	106704758	106704958	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	10423.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	6.46	3.52	7.42	2.41	4.5	6.27	2.33	7.29	1.97	1.0	1.51	0.94
Merged-chr3-105893239-2	chr3	105893141	105893341	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11180.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	9.69	6.54	3.42	2.01	2.45	12.86	5.31	5.33	13.77	14.56	17.08	11.28
Merged-chr16-92826961-1	chr16	92826861	92827061	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-887.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.63	4.78	6.28	1.61	5.32	4.7	9.63	2.47	4.33	1.0	8.54	4.07
Merged-chr6-118134852-2	chr6	118134704	118134904	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	4026.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	6.86	5.28	5.7	8.45	6.55	3.76	2.33	8.55	5.7	4.02	4.52	5.01
Merged-chr11-119393443-1	chr11	119393343	119393543	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2971.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	8.08	8.8	12.55	7.24	14.73	10.03	8.64	6.34	17.51	15.06	5.02	7.21
Merged-chr11-115658714-2	chr11	115658614	115658814	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	-30419.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.23	2.52	3.42	5.63	10.64	7.21	3.65	8.58	13.96	11.55	14.57	5.64
Merged-chr3-66004798-1	chr3	66004698	66004898	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46549.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.62	4.28	5.7	4.83	8.18	5.02	2.66	7.93	4.52	3.51	7.03	2.51
Merged-chr16-55969335-1	chr16	55969235	55969435	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024218, intron 3 of 5)	B1_Mm|SINE|Alu	3060.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	6.06	2.26	3.42	3.22	2.45	10.35	2.33	1.88	12.98	7.03	14.07	4.7
Merged-chr18-11773759-1	chr18	11773659	11773859	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65515.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	1.62	2.52	1.71	6.03	10.23	3.76	3.32	8.86	1.57	2.01	6.03	10.02
Merged-chr1-38988644-1	chr1	38988544	38988744	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026850, intron 1 of 5)	intron (NM_026850, intron 1 of 5)	830.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	6.06	4.28	5.7	8.85	6.55	5.33	3.65	8.02	3.93	1.0	6.53	5.01
Merged-chr6-137566019-1	chr6	137565919	137566119	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	4990.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	6.06	0.25	0.0	2.41	4.5	3.76	4.32	7.85	2.16	2.01	3.52	3.45
Merged-chr2-60948001-1	chr2	60947901	60948101	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	15203.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.06	0.5	7.99	8.04	9.0	4.7	5.31	8.38	5.9	2.01	7.03	8.14
Merged-chr5-86172079-1	chr5	86171979	86172179	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	664.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	8.08	6.04	5.7	2.01	5.32	13.8	7.97	4.63	12.19	13.56	5.02	2.82
Merged-chr2-165027374-1	chr2	165027274	165027474	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144892, intron 1 of 7)	intron (NM_144892, intron 1 of 7)	7405.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	5.65	4.78	3.42	2.41	7.36	3.76	4.65	9.0	9.05	1.51	7.54	12.22
Merged-chr4-144908276-1	chr4	144908176	144908376	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	L2a|LINE|L2	15139.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	2.42	1.51	1.71	1.21	7.36	3.76	2.33	7.4	7.47	4.52	6.53	1.57
Merged-chr1-20067545-1	chr1	20067445	20067645	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 66 of 66)	RLTR35B_MM|LTR|ERVL	-288909.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.0	0.5	0.0	0.4	1.23	4.39	6.31	5.61	1.18	5.02	1.0	0.0
Merged-chr3-154428527-2	chr3	154428423	154428623	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97702.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	2.83	0.5	3.99	0.8	4.5	7.53	6.98	5.75	13.18	12.05	28.14	7.83
Merged-chr3-9724340-1	chr3	9724240	9724440	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	109339.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.46	2.52	0.0	2.82	2.86	6.59	0.0	5.78	6.49	1.51	7.54	1.25
Merged-chr7-97800367-1	chr7	97800267	97800467	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11826.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	3.63	3.52	4.56	5.63	2.45	3.14	2.99	1.57	5.9	5.02	14.07	7.21
Merged-chr6-71950367-1	chr6	71950267	71950467	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009088, intron 16 of 33)	intron (NM_009088, intron 16 of 33)	41314.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	10.5	5.03	6.85	11.26	8.18	2.51	5.98	6.87	7.67	2.01	6.53	0.94
Merged-chr15-83182151-2	chr15	83182058	83182258	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9950.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	8.48	9.06	6.85	4.83	7.77	14.74	3.32	5.92	18.1	12.55	20.6	7.52
Merged-chr2-62646702-1	chr2	62646602	62646802	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	-447.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	10.09	8.8	5.7	3.22	3.27	3.76	5.65	3.98	6.29	3.01	6.03	5.33
Merged-chr6-37144400-1	chr6	37144300	37144500	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347104, intron 2 of 32)	(CA)n|Simple_repeat|Simple_repeat	155576.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	10.09	8.3	4.56	5.63	1.64	5.02	3.32	6.59	8.46	5.52	3.52	11.28
Merged-chr7-139971618-1	chr7	139971518	139971718	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001347613)	TTS (NM_001347613)	7137.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	1.62	4.78	2.28	2.01	13.09	3.76	8.3	5.3	2.75	0.5	3.52	2.51
Merged-chr8-77272856-2	chr8	77272760	77272960	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 20 of 22)	intron (NM_030113, intron 20 of 22)	-244196.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	2.42	5.53	5.7	17.29	4.91	5.64	13.62	11.69	2.75	7.53	12.56	9.4
Merged-chr1-183197736-1	chr1	183197636	183197836	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	23793.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.0	1.51	5.13	0.0	2.86	1.57	6.64	6.28	2.16	0.0	1.0	3.13
Merged-chr3-87263637-2	chr3	87263540	87263740	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030707)	promoter-TSS (NM_030707)	-116.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	7.27	4.53	13.12	23.73	5.73	9.09	4.65	12.7	2.95	4.52	8.54	2.19
Merged-chr9-83557502-3	chr9	83557384	83557584	+	762.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	9146.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	8.48	10.82	4.56	5.63	6.14	15.68	7.64	5.02	10.62	21.09	12.06	2.51
Merged-chr4-55811831-3	chr4	55811745	55811945	+	762.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-279370.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.69	9.06	15.4	16.89	5.32	6.27	7.64	13.71	8.85	6.03	11.56	5.95
Merged-chr5-122089101-3	chr5	122088991	122089191	+	762.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11860.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	9.69	10.31	9.13	7.64	17.18	10.03	4.98	9.45	10.03	11.55	17.08	6.58
Merged-chr7-48943927-3	chr7	48943815	48944015	+	762.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-15158.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	9.69	9.56	9.13	14.48	16.36	14.42	10.63	22.49	10.62	6.53	13.06	6.89
Merged-chr10-123091985-2	chr10	123091884	123092084	+	762.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15479.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	3.63	2.77	2.28	4.83	7.36	7.84	2.99	13.01	14.55	5.02	13.57	7.52
Merged-chr17-13869310-3	chr17	13869280	13869480	+	762.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	MTA_Mm|LTR|ERVL-MaLR	-78993.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	13.73	2.77	7.99	13.67	5.32	4.08	9.63	4.26	11.6	5.02	8.54	8.77
Merged-chr11-70434593-3	chr11	70434496	70434696	+	762.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	2016.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	7.67	11.07	13.12	1.61	9.41	23.83	8.97	5.41	11.6	10.54	20.1	5.64
Merged-chr11-20470540-2	chr11	20470425	20470625	+	762.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72728.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.23	2.01	7.42	3.62	4.91	4.08	2.99	3.22	14.55	16.57	13.57	7.83
Merged-chr17-35190274-3	chr17	35190166	35190366	+	762.872253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1826.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	10.5	6.29	21.11	8.85	18.82	9.72	4.32	11.66	8.46	4.52	11.56	11.28
Merged-chr16-24507872-2	chr16	24507745	24507945	+	762.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-21469.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	8.08	6.29	5.13	16.49	6.55	5.02	9.63	9.45	8.85	5.52	10.05	5.01
Merged-chr1-156841914-2	chr1	156841817	156842017	+	762.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028333, intron 1 of 4)	intron (NM_028333, intron 1 of 4)	2894.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	7.27	5.03	11.41	7.64	9.82	8.15	0.66	13.82	0.39	1.51	0.0	0.63
Merged-chr3-88623523-3	chr3	88623376	88623576	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2082.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	13.73	5.79	9.7	10.46	10.64	10.03	8.64	14.92	6.88	7.03	8.04	4.7
Merged-chr5-41739985-3	chr5	41739888	41740088	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24232.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	13.73	10.06	9.7	6.03	7.36	9.41	5.31	6.42	28.13	10.04	19.09	16.92
Merged-chr15-97449167-3	chr15	97449067	97449267	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-201880.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	16.96	10.56	11.98	22.12	7.77	9.72	8.97	13.07	11.21	14.56	9.04	8.46
Merged-chr4-129024988-3	chr4	129024875	129025075	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31751.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	11.71	5.53	18.25	12.47	13.09	7.53	7.97	11.78	13.96	5.02	4.52	5.95
Merged-chr15-12380743-3	chr15	12380639	12380839	+	762.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	59243.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	10.5	11.57	12.55	11.66	15.96	11.29	9.63	12.42	18.1	19.58	28.64	10.65
Merged-chr8-25982340-3	chr8	25982246	25982446	+	762.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-5602.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	10.5	7.55	3.99	6.44	6.55	4.7	7.31	6.5	5.11	8.03	4.52	8.77
Merged-chr11-95844156-2	chr11	95844073	95844273	+	762.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023121, intron 2 of 3)	B3|SINE|B2	928.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	2.42	2.52	6.28	6.44	10.64	11.92	5.31	8.75	9.64	8.54	14.07	4.39
Merged-chr11-102573010-3	chr11	102572894	102573094	+	762.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6125.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	15.34	8.05	5.13	4.42	12.27	12.54	5.31	7.65	8.85	12.05	6.53	8.46
Merged-chr1-171562062-2	chr1	171561970	171562170	+	762.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2877.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	7.67	6.79	13.12	6.03	11.86	13.17	5.98	12.22	2.16	3.51	0.0	2.51
Merged-chr9-108095795-3	chr9	108095691	108095891	+	762.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007567)	TTS (NM_007567)	-1311.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	10.09	5.79	0.57	1.61	13.5	7.84	5.31	5.05	17.9	7.53	9.04	8.77
Merged-chr16-30385635-3	chr16	30385530	30385730	+	762.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	2900.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	9.29	4.78	21.68	9.65	13.5	12.86	10.63	19.99	13.57	7.03	10.05	5.01
Merged-chr8-88209924-3	chr8	88209821	88210021	+	762.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	10708.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	2.83	10.56	5.13	12.07	11.45	7.21	11.96	16.12	7.28	3.01	8.04	8.14
Merged-chr8-31149011-3	chr8	31148938	31149138	+	762.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1278.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	5.25	5.03	7.99	6.84	4.91	4.7	4.98	7.01	10.23	12.05	12.06	10.65
Merged-chr6-97421862-1	chr6	97421762	97421962	+	762.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 3 of 23)	intron (NM_145148, intron 3 of 23)	37424.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	11.71	4.53	7.99	8.85	8.18	5.64	8.97	6.84	5.11	5.02	8.04	5.95
Merged-chr1-191153287-3	chr1	191153202	191153402	+	762.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11515.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	6.06	3.52	4.56	2.82	5.73	10.35	2.99	8.58	16.33	10.04	9.55	10.65
Merged-chr3-137948320-3	chr3	137948181	137948381	+	762.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	B4A|SINE|B4	29726.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	8.88	5.79	11.41	2.01	8.59	16.31	3.65	9.45	12.78	6.53	12.06	5.33
Merged-chr9-31559682-2	chr9	31559582	31559782	+	762.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95444.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	8.88	7.8	0.0	6.44	10.23	15.99	10.3	23.24	8.06	6.53	6.53	4.7
Merged-chr18-46601502-2	chr18	46601401	46601601	+	762.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3797.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	8.88	6.04	6.28	5.63	9.0	10.66	8.97	10.04	5.9	13.05	8.04	9.08
Merged-chr14-79516406-2	chr14	79516298	79516498	+	762.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	724.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	1.62	5.28	1.14	4.83	9.41	9.72	3.32	12.03	12.0	9.04	6.53	5.01
Merged-chr8-106138330-3	chr8	106138288	106138488	+	762.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040344, exon 5 of 5)	non-coding (NR_040344, exon 5 of 5)	-1414.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	14.54	7.29	2.28	8.85	9.41	6.59	8.3	7.46	9.44	11.05	7.03	8.77
Merged-chr17-14961111-3	chr17	14961034	14961234	+	762.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360983, exon 1 of 9)	exon (NM_001360983, exon 1 of 9)	126.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	12.92	11.82	2.28	8.85	6.55	14.42	16.61	5.61	12.98	16.57	12.56	6.89
Merged-chr13-45394404-4	chr13	45394231	45394431	+	762.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	4589.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.06	3.02	0.0	0.8	4.91	11.92	6.31	4.79	10.82	14.06	2.01	5.01
Merged-chr3-8816964-3	chr3	8816853	8817053	+	762.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025434, intron 2 of 2)	L1_Mus3|LINE|L1	106904.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	12.11	15.09	10.84	20.51	12.27	14.74	20.93	4.63	5.31	5.02	11.56	6.89
Merged-chr10-3840113-3	chr10	3840030	3840230	+	762.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-32537.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	1.62	2.52	7.99	14.48	2.45	1.88	2.66	10.4	9.44	5.02	15.07	5.95
Merged-chr9-3026914-6	chr9	3026800	3027000	+	762.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	11843.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	10.9	10.82	10.27	11.26	19.64	9.09	18.93	16.99	7.08	11.05	6.53	18.17
Merged-chr5-20934802-3	chr5	20934709	20934909	+	762.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-16180.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	6.46	8.8	15.4	4.02	12.68	8.15	12.62	14.8	11.01	15.57	4.02	5.01
Merged-chr11-116918824-3	chr11	116918720	116918920	+	762.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172948)	promoter-TSS (NM_172948)	-43.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	10.09	12.07	11.41	9.65	13.91	17.87	4.65	7.49	16.13	11.55	15.07	5.01
Merged-chr13-21812366-3	chr13	21812249	21812449	+	762.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175657)	TTS (NM_175657)	565.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	11.71	7.8	9.13	11.26	10.64	4.39	10.3	5.75	7.67	11.55	15.07	10.96
Merged-chr11-53771650-3	chr11	53771623	53771823	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	1250.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.23	3.77	6.85	2.01	5.32	5.33	5.98	2.78	5.51	10.04	4.52	4.39
Merged-chr9-94698167-1	chr9	94698067	94698267	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	28275.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	2.42	3.27	1.71	4.02	6.55	7.21	3.99	5.07	6.29	2.51	3.52	1.88
Merged-chr10-8415724-2	chr10	8415610	8415810	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	103115.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.63	7.55	7.99	18.9	8.18	5.96	4.65	13.23	5.11	6.03	6.53	11.59
Merged-chrX-85865037-1	chrX	85864937	85865137	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5236.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	4.04	2.26	1.14	1.61	1.64	14.11	3.99	6.81	11.01	6.53	8.54	2.82
Merged-chr2-157201109-2	chr2	157200989	157201189	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 1 of 21)	Lx9|LINE|L1	3445.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	2.02	3.77	2.28	4.02	4.5	8.15	5.65	3.64	9.83	4.02	6.53	9.4
Merged-chr10-71352172-1	chr10	71352072	71352272	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	L1MC5a|LINE|L1	4409.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	2.42	7.04	1.71	5.63	9.0	9.09	8.97	17.1	2.56	5.52	8.04	1.88
Merged-chr9-7829803-2	chr9	7829708	7829908	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007465, intron 2 of 7)	intron (NM_007465, intron 2 of 7)	6998.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	13.73	11.32	1.14	6.84	2.45	4.7	3.65	1.46	2.75	4.52	8.04	6.89
Merged-chr6-98140958-1	chr6	98140858	98141058	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	149175.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.65	1.51	5.7	7.64	9.0	7.21	8.64	8.05	4.33	10.54	5.53	3.13
Merged-chr7-46881197-1	chr7	46881097	46881297	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19934.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	7.27	2.01	2.28	3.62	6.95	8.47	1.99	9.9	6.88	10.04	4.52	4.39
Merged-chr16-36657868-1	chr16	36657768	36657968	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8209.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.63	2.26	1.14	5.23	11.05	14.74	3.99	5.27	6.49	11.55	10.55	4.39
Merged-chr6-53951121-1	chr6	53951021	53951221	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027749, intron 6 of 12)	intron (NM_027749, intron 6 of 12)	27552.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	4.04	4.53	0.0	2.82	3.27	8.78	4.65	9.06	3.93	4.52	14.07	4.07
Merged-chr17-35194478-2	chr17	35194391	35194591	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105939)	promoter-TSS (NR_105939)	-16.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	12.92	12.83	8.56	3.22	5.73	10.66	3.99	4.68	2.95	2.51	3.52	0.63
Merged-chr5-31767337-2	chr5	31767245	31767445	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	MTD|LTR|ERVL-MaLR	69295.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	8.08	5.53	2.28	14.48	15.14	8.15	8.97	6.9	20.85	21.59	15.58	9.4
Merged-chr19-10698493-1	chr19	10698393	10698593	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2275.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	6.86	4.02	2.85	8.04	4.5	11.92	1.33	6.84	4.52	4.02	9.55	5.01
Merged-chr11-22842591-1	chr11	22842491	22842691	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	17144.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.44	8.3	3.42	5.23	11.05	9.09	11.29	6.87	9.24	8.03	2.51	3.45
Merged-chr2-164926989-2	chr2	164926890	164927090	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15240.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	11.31	12.32	9.7	5.63	8.18	8.47	1.33	7.51	6.1	7.03	1.0	5.64
Merged-chr19-17130543-1	chr19	17130443	17130643	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174425.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	2.02	4.28	6.85	5.63	5.73	5.02	8.64	6.95	4.72	5.52	4.52	4.39
Merged-chrX-140625154-2	chrX	140625072	140625272	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24650.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	1.21	4.28	1.14	5.63	2.45	7.53	4.32	6.62	8.85	6.03	9.55	2.51
Merged-chr1-92974543-5	chr1	92974474	92974674	+	762.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-773.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.63	1.76	5.7	1.61	5.73	4.39	2.66	2.19	6.88	1.51	3.01	2.51
Merged-chr12-102498710-5	chr12	102498523	102498723	+	762.453308	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199004)	TTS (NM_001199004)	28713.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	1.21	2.52	5.7	6.03	6.95	5.64	5.31	6.28	5.9	12.55	7.03	4.39
Merged-chr10-95617029-3	chr10	95616927	95617127	+	762.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-52881.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	9.69	9.56	11.41	6.44	15.55	15.68	8.3	20.19	9.44	9.54	10.55	7.83
Merged-chr17-71203440-3	chr17	71203330	71203530	+	762.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-1224.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.85	8.3	10.27	8.85	5.32	10.66	2.99	7.15	19.08	16.57	14.57	5.95
Merged-chr13-63139971-3	chr13	63139869	63140069	+	762.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-100060.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.25	2.52	7.42	13.27	12.27	8.78	11.63	18.67	11.8	8.54	11.05	9.08
Merged-chr9-70194868-3	chr9	70194796	70194996	+	762.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12454.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	2.42	3.52	0.0	14.88	5.73	10.66	6.98	9.45	4.92	4.52	4.52	3.76
Merged-chr11-97404463-2	chr11	97404376	97404576	+	762.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41925.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	13.73	7.55	8.56	4.42	9.0	9.72	6.64	9.06	7.67	6.53	4.52	3.76
Merged-chr7-56042504-2	chr7	56042400	56042600	+	762.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7655.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	14.54	5.53	5.13	4.42	5.32	10.66	8.64	9.73	7.08	6.53	10.05	5.64
Merged-chr8-36958158-1	chr8	36958058	36958258	+	762.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5716.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.0	0.75	0.0	0.0	0.82	0.0	0.0	0.08	15.93	15.06	13.06	8.46
Merged-chr12-76392864-3	chr12	76392762	76392962	+	762.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11314.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	15.75	12.07	10.84	10.05	16.36	21.01	12.62	14.97	8.06	9.04	11.05	8.46
Merged-chr3-135689200-3	chr3	135689112	135689312	+	762.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2335.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	10.09	10.56	32.52	6.03	4.5	10.98	6.98	3.48	10.03	11.55	12.06	9.08
Merged-chr18-21651939-2	chr18	21651869	21652069	+	762.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081403, exon 1 of 8)	exon (NM_001081403, exon 1 of 8)	399.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	9.29	4.28	2.28	3.22	6.95	9.72	5.65	8.58	1.18	3.01	1.0	0.94
Merged-chr3-36816816-2	chr3	36816712	36816912	+	762.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46294.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	15.34	8.8	7.42	9.25	2.05	2.51	8.64	12.0	2.56	4.52	6.03	3.76
Merged-chr17-32319424-3	chr17	32319313	32319513	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357760, intron 1 of 11)	intron (NM_001357760, intron 1 of 11)	1825.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	4.85	7.55	15.97	3.22	5.32	17.87	5.31	9.2	12.0	5.52	14.57	1.57
Merged-chr14-45676837-3	chr14	45676748	45676948	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18705.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	12.11	9.06	9.13	7.64	6.55	11.92	22.59	10.63	11.21	5.02	11.05	5.33
Merged-chr4-74271442-3	chr4	74271330	74271530	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 2 of 20)	intron (NM_001356561, intron 2 of 20)	19551.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	1.62	3.77	7.42	10.05	24.55	7.84	10.3	17.89	11.21	16.07	7.03	10.02
Merged-chr12-98383366-3	chr12	98383247	98383447	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A2|LTR|ERVK	114712.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	1.62	6.79	11.98	8.04	6.55	3.14	3.32	7.15	12.59	6.53	9.55	5.33
Merged-chr4-132588658-3	chr4	132588570	132588770	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24603.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	11.71	8.55	3.42	3.22	14.32	10.35	5.98	9.81	8.65	8.54	5.02	2.51
Merged-chr16-78540617-1	chr16	78540517	78540717	+	762.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19699.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	2.83	2.26	6.28	2.82	9.0	15.99	7.31	6.98	12.0	3.51	2.01	4.07
Merged-chr8-18924617-1	chr8	18924517	18924717	+	762.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26254.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	1.62	3.52	4.56	1.61	2.05	3.76	3.65	2.66	10.03	12.05	15.58	10.02
Merged-chr16-52000257-2	chr16	52000158	52000358	+	762.325012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12971.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	2.83	1.51	7.42	7.24	10.64	6.9	9.3	14.83	7.67	18.58	13.57	7.52
Merged-chr1-131702632-2	chr1	131702546	131702746	+	762.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	13951.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	13.33	12.58	11.41	12.07	4.09	4.08	1.33	5.5	9.05	15.06	20.6	12.22
Merged-chr2-126673566-3	chr2	126673450	126673650	+	762.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1802.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	5.65	8.8	4.56	3.62	10.23	4.39	6.31	4.96	17.7	3.01	4.02	7.21
Merged-chr11-32321378-3	chr11	32321283	32321483	+	762.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21314.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	16.56	17.36	12.55	7.24	7.36	6.9	2.99	5.75	13.57	10.04	11.56	3.45
Merged-chr7-31053183-1	chr7	31053083	31053283	+	762.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194321, intron 4 of 7)	G-rich|Low_complexity|Low_complexity	1670.0	NM_052991	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	2.83	3.02	6.28	3.22	3.68	6.9	10.63	5.97	4.33	2.51	4.02	5.01
Merged-chr5-99576056-2	chr5	99575930	99576130	+	762.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	153030.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	5.65	4.28	3.42	9.65	5.32	6.9	7.97	11.52	7.47	7.03	13.06	12.22
Merged-chr17-71260518-2	chr17	71260424	71260624	+	762.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	B1F|SINE|Alu	50487.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.27	9.06	10.27	10.46	11.45	17.25	10.96	11.69	3.15	6.03	4.02	0.94
Merged-chr2-122440729-2	chr2	122440629	122440829	+	762.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172980)	promoter-TSS (NM_172980)	-91.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	3.23	7.04	5.7	13.67	9.0	12.54	10.63	6.48	17.7	18.58	38.19	13.47
Merged-chr11-80094687-3	chr11	80094586	80094786	+	762.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029856, exon 2 of 23)	exon (NM_001029856, exon 2 of 23)	5286.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	3.63	11.57	24.53	14.08	4.09	9.09	4.32	6.11	12.0	4.52	9.55	8.46
Merged-chr13-17773284-3	chr13	17773198	17773398	+	762.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	25825.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	7.27	7.29	11.98	14.88	10.64	8.15	9.63	16.15	10.82	4.52	22.11	13.16
Merged-chr2-128815720-3	chr2	128815604	128815804	+	762.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2599.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.23	7.55	6.28	10.05	2.05	10.35	18.27	14.66	9.05	5.52	12.56	5.95
Merged-chr6-53462137-2	chr6	53462047	53462247	+	762.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-111227.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	1.21	0.5	6.85	3.62	10.23	9.09	16.61	27.87	9.44	9.54	11.56	5.33
Merged-chr3-142570878-2	chr3	142570770	142570970	+	762.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355403, intron 10 of 11)	intron (NM_001355403, intron 10 of 11)	10514.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	5.25	9.56	3.99	8.45	9.41	2.51	9.63	11.05	6.1	7.03	11.56	10.65
Merged-chr12-91789443-2	chr12	91789377	91789577	+	762.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	9.69	6.29	14.26	9.25	8.18	12.23	3.65	10.63	6.49	5.02	12.06	4.07
Merged-chr12-98272743-2	chr12	98272637	98272837	+	762.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	L1ME3A|LINE|L1	4102.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.63	3.02	5.7	12.07	2.86	7.53	10.3	7.37	6.88	4.02	8.04	4.07
Merged-chrX-94140258-3	chrX	94140152	94140352	+	762.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-16485.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	6.06	4.53	13.12	7.64	12.27	12.54	6.31	16.85	20.26	15.06	16.08	16.29
Merged-chr15-62041311-3	chr15	62041202	62041402	+	762.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	2045.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	13.73	8.8	9.13	8.85	10.23	6.9	4.65	11.78	13.57	21.59	16.58	5.33
Merged-chr12-33168641-3	chr12	33168545	33168745	+	762.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	20959.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.86	13.58	11.41	17.29	4.5	13.17	6.64	16.88	19.28	12.05	11.56	6.27
Merged-chrX-36839614-3	chrX	36839522	36839722	+	762.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-22422.0	NR_131979	69591.0	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	12.92	7.04	13.69	13.67	11.05	9.41	9.63	16.23	8.06	11.55	12.06	9.08
Merged-chr15-64186890-3	chr15	64186782	64186982	+	762.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	125791.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.86	6.29	7.42	10.86	8.18	9.09	31.22	24.11	9.24	4.52	18.09	9.71
Merged-chr11-94236229-3	chr11	94236132	94236332	+	762.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_181819, exon 2 of 2)	3' UTR (NM_181819, exon 2 of 2)	6347.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	7.27	7.8	7.99	9.25	15.96	13.48	7.31	9.03	12.59	22.59	15.07	12.22
Merged-chr10-111455095-3	chr10	111454998	111455198	+	762.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-18129.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	8.48	6.29	11.41	6.84	9.82	8.15	5.65	11.83	14.36	10.54	31.15	10.96
Merged-chr15-96566927-3	chr15	96566750	96566950	+	762.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75112.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	7.67	5.53	2.28	5.23	7.77	5.96	4.65	5.86	8.06	7.03	6.03	7.52
Merged-chr8-94364160-1	chr8	94364060	94364260	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22269.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.42	1.76	0.57	11.66	10.64	7.53	7.31	6.22	4.92	5.02	7.54	6.58
Merged-chr2-4573890-2	chr2	4573795	4573995	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	14141.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.25	7.55	6.85	11.26	8.18	4.7	4.32	10.79	7.67	5.52	15.58	6.89
Merged-chr1-87230654-3	chr1	87230541	87230741	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	16702.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	12.92	13.08	8.56	6.44	9.41	12.54	7.31	7.74	9.24	3.51	13.06	6.89
Merged-chr4-93467574-1	chr4	93467474	93467674	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132063.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.81	2.01	0.57	6.03	2.45	7.53	2.99	10.91	2.36	7.53	9.04	6.27
Merged-chr19-4216188-3	chr19	4216081	4216281	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310038, intron 2 of 3)	intron (NM_001310038, intron 2 of 3)	1792.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	15.34	11.32	14.83	10.86	16.77	7.84	4.32	9.0	9.83	3.51	9.04	9.4
Merged-chr9-88241743-1	chr9	88241643	88241843	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85866.0	NM_011851	23959.0	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	5.25	5.28	2.28	4.02	6.55	7.21	2.33	8.8	6.1	4.02	2.51	6.27
Merged-chr8-4212928-1	chr8	4212828	4213028	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	4384.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	1.62	10.31	1.14	3.22	2.45	4.39	0.33	1.71	6.29	2.01	5.02	1.88
Merged-chr17-83219467-1	chr17	83219367	83219567	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	4184.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	2.42	2.01	2.85	3.22	3.68	5.02	5.31	6.9	3.93	0.0	1.51	5.95
Merged-chr16-78277709-1	chr16	78277609	78277809	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22255.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.75	1.14	0.8	8.18	11.6	5.98	7.68	5.11	10.54	9.04	0.94
Merged-chr13-83065499-2	chr13	83065385	83065585	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-367152.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.08	6.04	5.7	11.26	14.73	7.21	11.96	11.72	6.29	6.03	8.54	4.39
Merged-chr8-124066741-1	chr8	124066641	124066841	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43268.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	3.63	5.03	10.27	2.82	6.55	3.76	3.99	6.95	0.0	2.51	2.01	3.76
Merged-chr4-132975109-3	chr4	132974986	132975186	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	991.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	10.09	9.56	7.99	2.41	11.86	9.09	0.33	4.96	12.98	12.05	3.01	8.14
Merged-chr11-51762204-2	chr11	51762104	51762304	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1459.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	6.86	7.8	7.99	4.02	4.09	4.39	1.99	4.01	17.7	11.55	8.04	6.27
Merged-chr12-108636214-1	chr12	108636114	108636314	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163396, intron 1 of 14)	intron (NM_001163396, intron 1 of 14)	461.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	2.83	7.8	0.0	6.44	7.77	9.09	5.31	5.83	9.83	11.05	7.03	15.98
Merged-chr15-19856077-1	chr15	19855977	19856177	+	762.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	670704.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	4.04	4.53	2.28	8.85	0.0	0.0	0.33	0.0	15.74	14.06	7.54	4.7
Merged-chr7-140049304-1	chr7	140049204	140049404	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010836)	promoter-TSS (NM_010836)	-216.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	9.69	4.02	4.56	10.86	2.45	2.2	5.65	6.7	4.92	2.51	6.03	6.27
Merged-chr18-76254824-1	chr18	76254724	76254924	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010754, intron 1 of 10)	intron (NM_010754, intron 1 of 10)	-6297.0	NM_001252481	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.83	3.27	5.13	3.62	2.86	3.45	4.32	5.41	7.87	4.02	7.03	4.7
Merged-chr12-76551496-2	chr12	76551393	76551593	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3568.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	7.67	8.3	16.54	11.26	10.23	15.99	4.32	6.42	10.03	4.02	8.54	12.84
Merged-chr6-53993514-1	chr6	53993414	53993614	+	762.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	14823.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.23	2.26	3.42	0.0	3.27	7.53	2.66	1.12	13.37	9.04	16.58	6.58
Merged-chr4-136150765-1	chr4	136150665	136150865	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6943.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	16.96	7.04	9.13	6.44	10.23	6.27	2.33	1.23	10.82	4.52	3.01	1.25
Merged-chr6-58831028-1	chr6	58830928	58831128	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001361967)	promoter-TSS (NM_001361967)	-437.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	3.63	5.28	2.85	4.02	12.27	7.21	5.98	9.0	6.29	4.02	5.53	4.07
Merged-chr10-111831317-2	chr10	111831217	111831417	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43059.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	6.06	7.29	4.56	14.88	5.73	5.96	7.97	9.36	4.13	4.02	9.04	4.07
Merged-chr1-98094982-1	chr1	98094882	98095082	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357127, intron 1 of 25)	intron (NM_001357127, intron 1 of 25)	650.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	2.42	3.52	6.85	3.22	5.73	7.84	2.66	8.41	2.56	1.0	2.01	4.7
Merged-chr12-55481880-1	chr12	55481780	55481980	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	10767.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.08	8.55	3.42	1.21	3.68	3.45	0.0	1.23	5.31	6.53	1.0	3.13
Merged-chr7-25827381-3	chr7	25827292	25827492	+	761.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10862.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	6.06	8.55	11.98	8.45	16.36	9.41	7.97	11.38	8.85	12.55	10.55	10.96
Merged-chr4-149777366-2	chr4	149777227	149777427	+	761.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3060.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	6.86	4.02	10.27	1.61	6.55	2.51	1.33	3.39	3.74	0.5	0.0	1.25
Merged-chr9-59482603-3	chr9	59482504	59482704	+	761.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045640)	promoter-TSS (NR_045640)	-863.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	9.29	11.57	7.42	5.63	3.68	18.81	6.98	6.79	13.96	9.54	22.61	6.58
Merged-chr9-111994031-3	chr9	111993934	111994134	+	761.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124677.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	5.25	6.54	21.68	12.47	10.64	6.27	12.29	9.42	12.39	6.03	14.07	6.89
Merged-chr6-48016321-3	chr6	48016202	48016402	+	761.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31492.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	12.11	17.86	13.69	9.25	17.59	15.37	14.95	19.46	7.47	9.04	12.56	11.28
Merged-chr18-69400101-3	chr18	69400029	69400229	+	761.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	53969.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.4	5.28	9.13	12.07	3.27	10.03	4.65	8.3	12.78	12.55	14.07	5.33
Merged-chr17-88274524-3	chr17	88274432	88274632	+	761.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149020.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	11.71	13.08	9.13	9.25	11.86	15.68	5.98	6.28	21.44	9.54	19.09	9.08
Merged-chr15-96658958-3	chr15	96658836	96659036	+	761.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16023.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	10.5	7.04	3.42	12.07	8.59	15.68	9.3	11.97	6.88	13.56	17.59	9.08
Merged-chr4-128616016-3	chr4	128615897	128616097	+	761.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	2622.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	8.08	7.29	8.56	3.62	10.64	9.41	19.93	7.51	14.16	13.05	8.04	15.66
Merged-chr5-20812088-2	chr5	20811986	20812186	+	761.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 3 of 17)	intron (NM_172992, intron 3 of 17)	70038.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.23	4.78	1.14	9.25	6.95	13.8	13.29	23.24	9.83	12.05	6.03	5.33
Merged-chr4-128806868-4	chr4	128806849	128807049	+	761.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-837.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	9.29	2.26	2.28	10.05	5.73	11.92	5.31	10.23	9.05	7.53	12.06	11.28
Merged-chr15-65786045-2	chr15	65785907	65786107	+	761.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1013.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	2.02	3.27	2.28	2.01	8.18	9.09	0.66	4.88	7.47	6.53	3.52	5.33
Merged-chr11-110479254-2	chr11	110479166	110479366	+	761.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356346)	promoter-TSS (NM_001356346)	-74.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.81	0.5	4.56	0.8	3.68	7.53	2.66	8.66	13.37	9.54	12.56	9.08
Merged-chrX-159061520-2	chrX	159061419	159061619	+	761.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-194263.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	5.65	6.54	1.71	8.85	9.82	6.27	15.94	13.79	9.83	6.03	15.07	7.52
Merged-chr9-14066903-3	chr9	14066809	14067009	+	761.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-209392.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	5.25	14.09	8.56	8.45	19.23	21.32	6.98	3.31	15.34	8.54	11.05	7.21
Merged-chr4-141724881-3	chr4	141724771	141724971	+	761.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1452.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	9.29	9.31	10.84	8.04	8.18	5.02	7.31	11.58	19.87	12.05	14.07	11.28
Merged-chr19-7485332-3	chr19	7485205	7485405	+	761.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2014.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	6.46	15.09	10.27	16.09	11.05	3.45	2.99	5.3	10.82	3.01	6.03	10.02
Merged-chr16-5244648-3	chr16	5244539	5244739	+	761.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027446, exon 8 of 8)	3' UTR (NM_027446, exon 8 of 8)	11018.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	6.06	6.04	10.27	6.44	5.32	8.78	6.31	10.71	11.8	11.05	18.09	12.22
Merged-chr13-55421271-3	chr13	55421178	55421378	+	761.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021489, exon 8 of 14)	exon (NM_021489, exon 8 of 14)	5526.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	6.86	7.55	10.84	6.84	9.82	6.27	7.31	8.55	16.52	22.59	23.11	10.65
Merged-chr15-67405705-3	chr15	67405595	67405795	+	761.761108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178926.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	12.52	7.55	5.7	8.45	10.64	6.27	9.63	18.2	12.0	19.08	15.07	11.9
Merged-chr17-15808650-3	chr17	15808527	15808727	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	17959.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	16.15	6.79	33.09	8.45	12.27	8.15	11.29	23.92	14.16	5.02	20.1	8.77
Merged-chr6-142752192-2	chr6	142752100	142752300	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4486.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	4.04	2.77	6.85	3.22	9.41	5.96	5.98	6.9	11.21	9.54	6.03	10.02
Merged-chr2-83722041-3	chr2	83721944	83722144	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2353.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	10.09	6.54	6.28	16.49	11.05	10.35	20.93	22.35	15.34	5.52	7.03	7.83
Merged-chr16-36709011-2	chr16	36708908	36709108	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 2 of 7)	intron (NM_001285788, intron 2 of 7)	15030.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.67	6.29	10.84	4.02	8.18	12.23	2.99	10.54	10.42	11.55	5.53	5.33
Merged-chr1-23189529-2	chr1	23189432	23189632	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82737.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	13.33	10.56	10.27	8.45	4.09	5.64	4.65	9.53	6.49	14.56	3.52	2.82
Merged-chr8-10645892-1	chr8	10645792	10645992	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	236562.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	2.02	1.76	7.99	5.23	5.32	5.64	6.98	9.36	8.65	4.52	3.01	4.07
Merged-chr1-156861797-1	chr1	156861697	156861897	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028333)	TTS (NM_028333)	22774.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	8.48	5.03	8.56	2.41	5.32	9.72	2.33	3.53	3.74	1.51	3.52	2.19
Merged-chr7-97078714-1	chr7	97078614	97078814	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3037.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.86	3.52	13.69	6.44	8.18	6.9	7.31	7.65	1.18	2.51	1.0	1.88
Merged-chr14-40904853-2	chr14	40904749	40904949	+	761.6999509999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11884.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	9.69	9.06	9.13	12.87	6.55	9.09	7.31	19.85	2.95	4.52	10.05	2.51
Merged-chr19-55581074-3	chr19	55580974	55581174	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	121130.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	12.92	4.78	13.69	13.27	12.68	7.21	14.28	15.28	8.65	8.54	12.06	9.71
Merged-chr6-119859206-3	chr6	119859087	119859287	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	10994.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	4.04	8.8	4.56	2.41	9.41	10.66	6.31	3.31	8.46	5.52	16.08	8.14
Merged-chr11-87967867-3	chr11	87967777	87967977	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18708.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	10.9	7.8	7.99	5.63	6.55	6.9	4.32	5.5	20.06	7.53	15.58	2.51
Merged-chr11-52361605-3	chr11	52361509	52361709	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011694, intron 1 of 8)	CpG	747.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	7.27	12.32	10.84	13.67	15.14	8.78	14.28	15.11	11.8	14.56	12.56	14.41
Merged-chr6-15750242-1	chr6	15750142	15750342	+	761.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	29581.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.44	6.29	4.56	5.63	2.05	12.54	7.31	6.56	5.11	1.0	4.52	7.52
Merged-chr11-30268281-2	chr11	30268181	30268381	+	761.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-48509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.04	7.04	3.99	6.44	8.18	14.11	12.95	19.57	12.19	19.58	9.55	5.01
Merged-chr14-109484990-2	chr14	109484929	109485129	+	761.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-570790.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.81	3.27	4.56	5.23	10.64	10.03	6.31	17.58	8.85	0.5	7.54	0.63
Merged-chr4-132079782-3	chr4	132079703	132079903	+	761.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4490.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	13.33	5.28	6.85	10.86	8.59	8.47	4.32	7.43	11.8	22.09	13.57	12.22
Merged-chr4-130912374-3	chr4	130912283	130912483	+	761.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-951.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	10.9	4.28	11.41	5.23	9.82	15.05	8.3	7.79	14.55	15.06	6.53	8.46
Merged-chr2-132101016-3	chr2	132100912	132101112	+	761.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 2 of 6)	RLTR19-int|LTR|ERVK	44096.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.06	13.08	10.84	10.05	18.0	14.74	10.63	8.33	17.11	10.04	13.57	8.77
Merged-chr3-52019811-3	chr3	52019734	52019934	+	761.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	85172.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	8.08	7.29	6.28	7.24	5.73	7.21	8.97	12.14	14.36	5.52	22.61	8.77
Merged-chr17-35246154-3	chr17	35246084	35246284	+	761.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019693, intron 4 of 10)	intron (NM_019693, intron 4 of 10)	2109.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	12.52	4.28	3.42	2.01	8.59	11.6	5.31	8.58	7.47	5.52	3.01	4.39
Merged-chr5-91402886-2	chr5	91402778	91402978	+	761.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_007568, exon 1 of 6)	5' UTR (NM_007568, exon 1 of 6)	116.0	NM_007568	12223.0	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	6.06	7.8	10.84	6.44	15.96	13.48	9.63	9.53	2.95	2.51	4.02	4.7
Merged-chr3-88631165-3	chr3	88631075	88631275	+	761.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	9781.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.06	10.31	5.7	12.87	18.41	5.64	17.94	11.89	3.93	12.55	7.03	9.71
Merged-chr17-72798030-3	chr17	72797930	72798130	+	761.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38598.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	6.06	7.8	9.7	4.83	10.23	5.64	8.64	6.9	14.16	6.03	14.57	2.19
Merged-chr14-71104187-2	chr14	71104091	71104291	+	761.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147082.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	7.67	6.79	3.99	10.46	37.23	11.92	32.88	25.07	3.34	4.52	9.55	4.7
Merged-chr7-105726573-3	chr7	105726475	105726675	+	761.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10009.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	10.9	5.53	4.56	5.23	15.96	9.72	5.65	10.68	12.78	6.53	22.61	7.52
Merged-chr2-60905420-3	chr2	60905314	60905514	+	761.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-23976.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.23	9.56	6.85	12.47	10.64	9.09	1.66	8.92	17.9	13.56	16.08	11.9
Merged-chr1-174043882-3	chr1	174043789	174043989	+	761.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146717)	TTS (NM_146717)	1956.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	4.44	7.29	9.7	6.03	8.18	17.25	12.95	6.25	14.95	11.55	19.09	4.39
Merged-chr12-79347874-2	chr12	79347777	79347977	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	50526.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	8.88	5.53	0.0	2.41	1.23	6.59	0.66	7.57	7.28	5.52	10.55	5.01
Merged-chr2-180726199-2	chr2	180726097	180726297	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	858.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	7.27	4.53	6.28	7.64	14.73	6.59	3.32	12.08	7.28	8.54	12.06	10.65
Merged-chr17-35471044-1	chr17	35470944	35471144	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010391, exon 3 of 7)	exon (NM_010391, exon 3 of 7)	955.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	6.86	4.28	3.42	3.62	4.5	8.78	5.31	7.91	2.36	2.51	0.0	0.94
Merged-chr1-164057001-1	chr1	164056901	164057101	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011345, exon 14 of 14)	3' UTR (NM_011345, exon 14 of 14)	-5075.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.04	3.77	5.7	6.84	7.36	5.33	2.99	6.87	3.34	11.55	5.53	3.45
Merged-chr16-77083102-1	chr16	77083002	77083202	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 16 of 23)	RLTR11A2|LTR|ERVK	69033.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.81	2.52	2.85	1.61	8.59	5.96	2.66	5.16	8.26	6.53	7.54	8.14
Merged-chr2-180964213-3	chr2	180964100	180964300	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3025.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	8.88	15.34	21.11	2.01	12.68	6.59	12.95	7.26	19.67	7.53	15.07	7.83
Merged-chr13-119444427-1	chr13	119444327	119444527	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 4 of 10)	intron (NM_145457, intron 4 of 10)	15525.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	1.21	3.02	9.13	5.23	9.82	5.96	8.97	8.89	4.13	12.55	9.04	3.76
Merged-chr2-91328700-3	chr2	91328560	91328760	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	63545.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	6.86	7.29	8.56	12.07	9.41	9.41	5.65	13.77	8.65	10.54	15.07	8.14
Merged-chr10-81258094-2	chr10	81257995	81258195	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285853, intron 1 of 12)	intron (NM_001285853, intron 1 of 12)	796.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	5.65	9.31	8.56	4.02	6.95	2.82	4.32	6.9	7.28	15.06	13.06	12.53
Merged-chr7-114922387-1	chr7	114922287	114922487	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26263.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	8.08	3.52	7.99	5.63	6.55	3.76	8.3	6.87	7.47	10.04	6.03	5.33
Merged-chr11-99186279-3	chr11	99186158	99186358	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31181.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	8.08	10.82	11.41	1.61	7.77	16.31	5.98	2.38	19.87	8.03	9.04	2.51
Merged-chr4-86723755-2	chr4	86723654	86723854	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24801.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	5.65	16.6	5.7	10.05	11.05	4.08	7.31	10.96	3.54	6.03	5.02	2.51
Merged-chr1-191025452-2	chr1	191025368	191025568	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027298, exon 1 of 2)	non-coding (NR_027298, exon 1 of 2)	117.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	11.31	5.79	13.69	10.86	8.18	7.21	11.29	7.23	10.82	5.02	11.05	6.58
Merged-chr4-43453531-1	chr4	43453431	43453631	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110321, intron 2 of 7)	intron (NM_001110321, intron 2 of 7)	1095.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.81	4.78	0.57	4.42	2.45	5.96	5.65	7.85	8.26	1.51	4.52	5.64
Merged-chr7-114072134-2	chr7	114072043	114072243	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	45638.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.44	8.8	2.28	0.4	6.14	7.21	1.0	4.04	14.75	15.06	9.55	3.45
Merged-chr13-8679376-1	chr13	8679276	8679476	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	191668.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	1.01	0.0	0.0	9.41	6.59	2.33	10.88	1.97	4.02	7.03	1.25
Merged-chr6-72038900-1	chr6	72038800	72039000	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	RLTR13C2|LTR|ERVK	3628.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	2.83	4.02	1.71	1.61	11.05	6.9	7.97	0.5	3.54	4.02	1.51	4.7
Merged-chr9-13716511-3	chr9	13716396	13716596	+	761.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32685.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	8.88	11.32	14.26	6.44	11.45	9.41	5.31	11.8	12.59	10.04	13.06	8.14
Merged-chr15-6030565-3	chr15	6030466	6030666	+	761.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155428, intron 2 of 2)	Lx8b|LINE|L1	14138.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	7.27	8.05	9.13	12.87	13.5	5.96	14.62	17.22	9.24	7.53	13.06	10.02
Merged-chr15-12012637-2	chr15	12012542	12012742	+	761.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16635.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	17.77	9.81	13.12	18.9	8.18	9.09	4.65	13.18	2.95	3.01	5.02	7.21
Merged-chr2-148585326-2	chr2	148585239	148585439	+	761.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-87276.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	5.25	7.29	7.42	2.82	5.32	11.29	10.63	4.77	9.24	15.06	12.56	5.64
Merged-chr9-83565478-2	chr9	83565386	83565586	+	761.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	17148.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	7.67	6.54	15.97	20.91	10.23	7.53	1.0	25.09	1.57	0.0	1.0	1.88
Merged-chr2-161512126-1	chr2	161512026	161512226	+	761.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-403040.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.81	2.52	0.0	2.41	0.82	0.0	0.0	0.53	9.83	10.04	11.05	11.59
Merged-chr1-74748909-3	chr1	74748799	74748999	+	761.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153744)	promoter-TSS (NM_153744)	56.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	5.65	7.29	0.57	12.47	10.64	8.78	12.29	6.11	10.03	6.53	10.05	4.39
Merged-chr7-31111797-2	chr7	31111680	31111880	+	761.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-783.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	5.25	7.8	5.13	4.83	6.55	7.53	7.64	5.72	10.42	15.57	13.57	6.89
Merged-chr13-105204088-1	chr13	105203988	105204188	+	761.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	88926.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	14.94	8.05	6.85	8.85	2.86	3.14	5.98	1.99	5.7	2.51	9.04	2.51
Merged-chr10-120872590-1	chr10	120872490	120872690	+	761.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	14961.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	5.25	1.76	0.0	4.42	7.77	8.78	2.33	5.92	1.77	1.51	1.51	2.19
Merged-chr1-78897375-1	chr1	78897275	78897475	+	761.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	MLTR25A|LTR|ERVK	80464.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	6.46	6.04	7.42	1.61	2.45	8.78	6.64	6.7	5.9	4.52	4.02	2.82
Merged-chr11-101735212-3	chr11	101735113	101735313	+	761.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144831, intron 2 of 22)	URR1B|DNA|hAT-Charlie	2257.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	7.67	7.8	7.99	8.85	10.23	14.42	3.65	13.88	10.23	6.03	15.58	8.77
Merged-chr2-43784138-3	chr2	43784009	43784209	+	761.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	35285.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	1.62	5.53	4.56	5.23	4.5	11.6	5.98	4.57	6.29	7.53	16.08	3.13
Merged-chr6-85402916-3	chr6	85402787	85402987	+	761.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20999.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	12.11	8.55	14.83	6.44	5.32	7.84	6.98	10.21	10.23	1.51	13.57	2.19
Merged-chr2-153263248-3	chr2	153263153	153263353	+	761.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	21721.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	10.5	15.34	19.97	11.26	12.68	17.87	5.65	5.66	8.46	10.04	16.58	6.27
Merged-chr4-131918874-3	chr4	131918769	131918969	+	761.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	1160.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	13.73	7.55	15.4	8.85	10.23	8.78	14.62	27.76	9.44	6.03	17.59	6.58
Merged-chr13-73459393-3	chr13	73459342	73459542	+	761.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7941.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	11.31	13.33	10.84	10.86	11.05	14.11	4.65	14.02	4.92	4.02	10.55	5.01
Merged-chr15-81044591-3	chr15	81044460	81044660	+	761.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	60487.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.88	10.31	6.85	8.04	8.59	7.53	4.98	9.87	7.47	6.03	7.03	9.4
Merged-chr14-20846316-2	chr14	20846208	20846408	+	761.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9646.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.25	4.53	5.7	6.84	4.5	12.54	8.97	8.33	8.06	10.04	10.55	7.21
Merged-chr6-100211857-2	chr6	100211751	100211951	+	761.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	75507.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.65	6.54	7.99	1.61	13.5	6.59	3.65	10.07	10.62	9.04	8.04	6.58
Merged-chr16-62826782-3	chr16	62826683	62826883	+	761.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	12107.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	8.08	7.29	2.28	10.86	11.05	6.59	6.64	11.75	14.75	21.59	21.1	8.14
Merged-chr14-66635173-1	chr14	66635073	66635273	+	761.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271761)	promoter-TSS (NM_001271761)	-78.0	NM_001271759	11549.0	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	4.04	4.02	2.28	4.42	6.95	9.41	9.97	8.41	3.93	7.03	11.56	4.7
Merged-chr9-22394933-2	chr9	22394817	22395017	+	761.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-5711.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	9.29	3.27	8.56	7.24	10.64	8.78	11.29	5.78	17.11	13.56	13.06	10.65
Merged-chr5-99630313-3	chr5	99630228	99630428	+	761.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	B4A|SINE|B4	98732.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.63	13.08	7.42	12.07	6.95	9.41	6.31	9.62	16.72	21.59	10.05	12.84
Merged-chr8-119574554-3	chr8	119574464	119574664	+	761.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	636.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	7.27	6.29	4.56	8.45	9.41	3.14	6.98	14.24	8.46	12.55	10.55	7.21
Merged-chr18-60740576-2	chr18	60740489	60740689	+	761.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	6157.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.86	5.53	10.27	2.01	11.45	17.87	12.95	3.76	13.18	10.54	17.59	7.52
Merged-chr1-131492609-2	chr1	131492516	131492716	+	761.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	34745.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.44	3.77	13.69	4.42	9.0	10.35	4.65	6.53	15.74	10.04	12.56	2.51
Merged-chr8-41024843-2	chr8	41024738	41024938	+	761.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_015457)	TTS (NR_015457)	7370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	8.08	12.32	1.14	13.27	9.0	9.09	5.31	6.14	9.83	8.54	11.05	6.58
Merged-chr6-140614873-3	chr6	140614773	140614973	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7790.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	14.54	9.81	10.84	12.47	9.41	14.42	6.98	11.86	22.03	14.06	13.57	7.52
Merged-chr8-88655488-3	chr8	88655392	88655592	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8145.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	7.27	9.81	21.11	6.44	7.36	4.7	9.63	12.36	9.24	9.54	10.55	9.4
Merged-chr18-61556020-3	chr18	61555976	61556176	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357498, intron 1 of 10)	intron (NM_001357498, intron 1 of 10)	803.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	6.06	6.29	3.42	5.23	4.5	3.14	3.32	4.21	4.92	10.04	9.04	7.21
Merged-chr19-37127151-3	chr19	37126994	37127194	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290829, intron 3 of 9)	B1_Mur1|SINE|Alu	-46749.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	10.09	7.8	1.14	8.45	3.27	10.35	5.65	9.53	7.08	7.03	8.04	5.64
Merged-chr7-80642096-3	chr7	80641985	80642185	+	761.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040343, exon 5 of 5)	non-coding (NR_040343, exon 5 of 5)	6068.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	15.75	10.56	6.28	7.24	9.41	6.27	7.31	7.01	8.85	10.04	12.06	9.71
Merged-chr18-62253996-3	chr18	62253878	62254078	+	761.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70226.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	8.88	13.08	11.41	12.87	8.18	11.92	4.98	11.44	18.29	9.04	11.05	10.02
Merged-chr5-102071461-3	chr5	102071362	102071562	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1541.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	11.31	7.04	3.42	8.45	13.09	9.41	7.31	8.58	9.05	10.54	9.55	4.7
Merged-chr4-130890276-3	chr4	130890184	130890384	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23050.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	14.54	4.78	18.25	6.84	14.73	10.66	27.9	33.14	11.21	5.02	20.6	4.07
Merged-chr5-108248719-3	chr5	108248596	108248796	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-20201.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	12.52	6.79	14.26	5.23	17.18	12.54	16.61	9.06	11.8	3.01	14.57	8.77
Merged-chr10-14179435-3	chr10	14179323	14179523	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	213044.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	13.73	5.79	18.83	11.26	10.23	10.35	19.93	26.3	9.44	25.61	9.55	7.52
Merged-chr10-127536707-4	chr10	127536571	127536771	+	761.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2112.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	8.88	5.28	10.27	7.64	6.95	12.54	9.63	3.14	9.24	4.02	6.53	2.82
Merged-chr1-62722441-3	chr1	62722330	62722530	+	761.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	19113.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	19.79	7.29	13.69	5.63	6.14	8.78	5.31	8.47	12.0	11.05	14.57	2.19
Merged-chr1-34312353-2	chr1	34312262	34312462	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120837.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	4.85	4.53	12.55	3.22	2.86	2.82	4.65	14.66	11.01	6.03	12.56	4.7
Merged-chr3-69208812-3	chr3	69208722	69208922	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-13597.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	8.48	6.54	10.84	10.05	6.14	12.86	9.97	11.02	12.0	7.03	14.57	8.46
Merged-chr4-101331277-3	chr4	101331120	101331320	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15807.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	3.63	6.29	10.84	5.63	2.05	5.02	10.63	13.79	13.57	8.03	3.52	10.34
Merged-chr1-152697633-1	chr1	152697533	152697733	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-52918.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.63	4.78	4.56	1.21	4.5	10.35	7.31	6.28	4.72	6.53	9.04	5.95
Merged-chr2-50705127-1	chr2	50705027	50705227	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-204557.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.02	3.02	1.14	2.82	4.09	4.08	6.31	6.36	6.49	8.54	7.03	3.45
Merged-chr13-102682805-1	chr13	102682705	102682905	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10742.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.23	0.5	7.42	1.21	5.73	2.82	4.98	10.51	7.47	5.02	4.52	3.76
Merged-chrX-168671973-1	chrX	168671873	168672073	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010832, intron 1 of 11)	intron (NM_010832, intron 1 of 11)	1929.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	5.65	6.29	9.13	2.01	8.18	10.66	7.31	10.93	2.16	8.03	4.02	4.39
Merged-chr4-70265401-1	chr4	70265301	70265501	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313762, intron 21 of 33)	intron (NM_001313762, intron 21 of 33)	145034.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	5.65	5.53	2.28	6.44	0.82	4.7	8.64	6.84	7.47	6.03	4.52	4.7
Merged-chr17-10321632-1	chr17	10321532	10321732	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_037588)	TTS (NR_037588)	1713.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	5.65	6.29	5.13	2.41	9.82	17.87	8.97	4.63	14.75	11.55	6.03	1.88
Merged-chr14-47367346-1	chr14	47367246	47367446	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6514.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.81	2.26	2.28	0.0	5.32	3.45	4.32	4.07	2.95	3.51	1.0	0.94
Merged-chr12-119356907-3	chr12	119356808	119357008	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86502.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	21.0	18.36	38.79	39.42	6.14	3.14	4.32	7.51	10.82	6.53	10.05	7.83
Merged-chr9-47687885-2	chr9	47687799	47687999	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	130309.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	6.86	7.8	7.99	9.65	2.86	5.96	2.66	8.83	3.74	7.03	7.54	1.25
Merged-chr16-30835938-1	chr16	30835838	30836038	+	761.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77|LTR|ERVL	236215.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.23	13.08	6.85	3.22	5.32	18.5	6.98	1.54	13.77	20.08	13.06	4.39
Merged-chr1-58740597-1	chr1	58740497	58740697	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 6 of 8)	intron (NM_001355056, intron 6 of 8)	10045.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	1.62	1.26	1.14	0.0	2.05	4.7	1.0	8.1	0.59	2.51	4.52	3.76
Merged-chr6-129238430-3	chr6	129238345	129238545	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	37.0	NR_040266	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	9.69	9.06	7.42	6.44	7.36	9.41	7.97	5.75	16.13	14.56	7.03	8.14
Merged-chr2-148731778-1	chr2	148731678	148731878	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	642.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	1.62	4.78	4.56	4.42	9.41	6.27	5.98	7.88	0.39	3.51	3.52	3.76
Merged-chr3-107204318-1	chr3	107204218	107204418	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	17414.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.81	0.25	5.7	0.0	18.0	6.9	1.99	5.75	6.49	5.52	15.58	3.13
Merged-chr2-170176540-1	chr2	170176440	170176640	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33865.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.23	3.02	4.56	1.21	1.23	6.59	2.66	6.22	4.72	9.04	3.52	3.13
Merged-chr3-89354995-2	chr3	89354895	89355095	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029974, intron 9 of 15)	MamRep564|Unknown|Unknown	-4967.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	8.08	6.29	4.56	4.02	7.36	13.17	4.32	6.67	12.59	15.57	11.56	4.07
Merged-chr14-104467973-1	chr14	104467873	104468073	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011143)	promoter-TSS (NM_011143)	26.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.83	2.26	2.28	4.83	6.14	7.53	9.3	6.0	3.34	6.53	5.02	2.82
Merged-chr11-75623124-1	chr11	75623024	75623224	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-7896.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.63	3.77	11.41	3.62	8.59	5.02	4.32	9.36	3.74	1.0	1.51	4.39
Merged-chr1-133418369-3	chr1	133418296	133418496	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	5816.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	12.11	6.04	8.56	4.83	7.77	13.17	6.64	13.07	10.42	5.02	15.07	10.65
Merged-chr11-32568208-1	chr11	32568108	32568308	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	L1MB1|LINE|L1	34942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.83	2.26	5.13	3.62	4.5	8.78	1.99	9.59	1.57	2.01	1.51	1.25
Merged-chr6-129545303-1	chr6	129545203	129545403	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12019.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	9.29	4.53	0.0	3.62	1.64	4.39	6.98	7.07	2.95	0.5	0.0	0.63
Merged-chr10-8061932-1	chr10	8061832	8062032	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105809.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	2.02	2.52	5.7	6.44	4.09	6.27	5.98	7.29	3.93	4.52	4.02	1.57
Merged-chr17-69349445-1	chr17	69349345	69349545	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33730.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	2.42	2.01	7.99	3.22	7.77	4.08	3.99	10.18	4.52	1.0	5.53	6.27
Merged-chr17-23551037-2	chr17	23550938	23551138	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	239.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	11.71	11.32	6.28	6.84	8.18	7.84	5.65	4.6	11.01	9.04	8.54	8.77
Merged-chr8-25110175-2	chr8	25110068	25110268	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_155282)	TTS (NR_155282)	7989.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	7.67	2.26	12.55	1.61	5.32	8.78	4.32	9.45	6.49	5.02	6.03	5.01
Merged-chr12-100728790-1	chr12	100728690	100728890	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-3670.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	7.67	5.03	5.7	6.84	15.14	10.66	1.0	6.03	8.26	7.03	5.02	5.64
Merged-chr10-22141070-2	chr10	22140963	22141163	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254744, intron 1 of 1)	MuRRS-int|LTR|ERV1	8207.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	6.06	7.04	8.56	8.04	2.86	4.7	4.65	7.51	7.67	13.56	7.54	5.33
Merged-chr9-63006234-2	chr9	63006132	63006332	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25353.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.46	3.02	6.85	6.44	5.73	10.98	12.29	10.71	8.85	7.53	7.03	7.21
Merged-chr5-99364331-1	chr5	99364231	99364431	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111404.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.63	1.51	2.28	3.62	1.23	7.53	3.99	5.83	7.67	4.52	5.02	2.51
Merged-chr11-95805852-1	chr11	95805752	95805952	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18648.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.85	6.54	0.57	7.64	13.91	14.11	5.65	6.79	7.47	2.51	7.03	2.51
Merged-chr17-24162957-3	chr17	24162859	24163059	+	760.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361535)	TTS (NM_001361535)	774.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	1.62	8.55	8.56	8.04	11.86	10.66	6.31	7.93	8.46	8.03	5.53	8.46
Merged-chr7-67479390-3	chr7	67479292	67479492	+	760.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106534.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	12.92	5.28	10.84	3.22	14.73	9.72	6.64	18.25	13.37	11.05	20.6	9.08
Merged-chr2-170308118-3	chr2	170308012	170308212	+	760.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48249.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	16.15	10.56	19.4	4.02	12.27	12.86	5.65	3.53	11.6	16.57	7.03	4.07
Merged-chr11-17004362-2	chr11	17004277	17004477	+	760.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	4341.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.06	3.77	3.99	5.23	10.64	14.74	5.98	8.64	11.41	6.53	18.59	5.64
Merged-chr16-17131586-3	chr16	17131461	17131661	+	760.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022324, intron 2 of 2)	intron (NM_022324, intron 2 of 2)	822.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	14.13	4.28	10.84	1.61	13.09	15.99	9.97	16.49	18.88	9.54	12.56	12.53
Merged-chr1-180289952-3	chr1	180289845	180290045	+	760.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33645.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	7.27	8.55	10.27	5.63	24.55	8.78	12.95	12.03	14.36	5.02	11.05	10.65
Merged-chr13-104285108-3	chr13	104285003	104285203	+	760.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2732.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	10.9	7.04	7.42	14.88	7.77	10.66	9.63	10.21	13.57	13.56	16.08	10.02
Merged-chr2-129565149-2	chr2	129564978	129565178	+	760.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27761.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.0	4.02	3.42	4.83	4.09	5.33	8.64	1.26	5.31	7.53	9.04	3.76
Merged-chr14-65113922-4	chr14	65113804	65114004	+	760.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-15798.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.65	4.78	15.4	3.22	7.36	3.45	8.3	5.27	5.9	7.03	6.53	8.77
Merged-chr15-96666085-3	chr15	96665989	96666189	+	760.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23176.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	10.09	9.81	4.56	7.64	3.68	8.47	5.65	7.85	17.31	10.54	22.11	10.65
Merged-chr2-32450519-3	chr2	32450425	32450625	+	760.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	68.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	8.48	8.8	9.13	6.03	10.64	10.98	8.64	11.07	10.42	11.05	18.09	14.41
Merged-chr19-29571265-3	chr19	29571168	29571368	+	760.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081319, intron 8 of 25)	MTEb|LTR|ERVL-MaLR	48986.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	8.88	8.3	7.99	10.46	4.5	5.33	8.3	9.17	12.39	5.52	10.05	3.45
Merged-chr4-149309469-2	chr4	149309365	149309565	+	760.825012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1732.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	10.5	4.78	7.99	4.42	14.73	5.02	6.64	14.19	15.54	9.54	14.07	5.95
Merged-chr13-28858185-2	chr13	28858087	28858287	+	760.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	27235.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	8.88	6.04	12.55	12.07	19.23	9.09	12.62	28.15	5.7	3.51	15.58	4.39
Merged-chr5-44238411-1	chr5	44238311	44238511	+	760.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11805.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	5.25	5.28	2.28	4.02	7.77	7.53	11.63	7.49	2.95	4.02	4.52	6.89
Merged-chr17-35915759-3	chr17	35915663	35915863	+	760.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361455, intron 1 of 5)	intron (NM_001361455, intron 1 of 5)	677.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	10.09	10.06	3.99	2.41	3.68	8.47	8.3	3.42	15.34	10.54	11.05	6.89
Merged-chr9-37540815-3	chr9	37540716	37540916	+	760.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020518, intron 3 of 6)	intron (NM_020518, intron 3 of 6)	1561.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	17.36	3.52	15.97	13.67	4.5	6.9	4.65	4.49	11.41	18.08	19.6	8.46
Merged-chr16-90738315-3	chr16	90738218	90738418	+	760.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029844)	promoter-TSS (NM_029844)	-6.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	10.5	6.54	11.98	16.49	10.23	7.53	6.31	11.86	13.77	9.54	13.06	13.16
Merged-chr8-36184261-1	chr8	36184161	36184361	+	760.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28251.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	6.86	3.77	9.13	9.25	7.77	7.21	6.98	9.0	4.33	5.02	5.53	3.76
Merged-chr4-59464417-2	chr4	59464323	59464523	+	760.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger17c|DNA|TcMar-Tigger	-25790.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.27	7.55	27.38	13.67	9.0	7.84	17.61	28.96	7.87	4.02	8.04	5.95
Merged-chr6-108246592-3	chr6	108246472	108246672	+	760.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	33476.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	8.88	7.8	13.69	16.49	1.23	5.64	8.3	19.37	10.42	7.53	14.07	5.95
Merged-chr10-88122762-2	chr10	88122693	88122893	+	760.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029249, intron 6 of 10)	intron (NM_029249, intron 6 of 10)	24148.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	10.09	2.26	10.84	9.25	6.14	4.7	5.65	14.1	2.56	2.01	2.51	5.33
Merged-chr10-99165124-3	chr10	99165028	99165228	+	760.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	56993.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	9.29	10.82	1.14	10.46	10.64	14.11	2.33	16.32	11.41	3.51	13.57	6.58
Merged-chr12-71007045-3	chr12	71006938	71007138	+	760.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	Lx8|LINE|L1	8785.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	6.06	10.31	8.56	5.63	9.82	13.17	8.97	12.87	7.08	2.01	16.08	6.89
Merged-chr2-25626154-1	chr2	25626054	25626254	+	760.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007995, intron 6 of 9)	intron (NM_007995, intron 6 of 9)	1820.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	5.65	3.77	2.85	0.8	5.32	7.53	6.64	9.93	4.33	1.0	1.51	3.76
Merged-chr13-74166912-1	chr13	74166812	74167012	+	760.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001081060)	TTS (NM_001081060)	41788.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	2.83	3.27	5.13	2.41	9.0	6.27	3.32	8.16	3.74	3.01	6.03	5.01
Merged-chr8-126692414-2	chr8	126692314	126692514	+	760.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98978.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.85	5.79	13.69	10.05	13.5	2.51	9.63	10.79	6.29	4.52	5.02	2.19
Merged-chr7-118843239-2	chr7	118843138	118843338	+	760.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001168220, exon 5 of 5)	3' UTR (NM_001168220, exon 5 of 5)	12375.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	8.88	5.28	6.28	13.27	4.5	8.15	3.32	6.7	2.16	5.02	2.01	1.25
Merged-chr8-58212453-2	chr8	58212352	58212552	+	760.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	488344.0	NM_001177534	100271928.0	Mm.484123	NM_001177534		Gm15881	-	predicted gene 15881	protein-coding	3.23	4.28	5.7	13.67	9.82	5.64	1.99	9.64	8.85	12.55	19.6	6.58
Merged-chr3-96284649-2	chr3	96284562	96284762	+	760.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010186, intron 5 of 5)	intron (NM_010186, intron 5 of 5)	9307.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	14.54	10.06	2.85	10.86	5.32	8.15	7.31	11.52	15.34	2.51	9.04	3.76
Merged-chr17-28485652-2	chr17	28485558	28485758	+	760.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 1 of 10)	CpG	491.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	4.44	7.04	4.56	5.63	7.36	9.41	8.97	5.78	8.26	3.01	7.03	6.27
Merged-chrX-37049002-2	chrX	37048935	37049135	+	760.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173779, exon 1 of 1)	exon (NM_173779, exon 1 of 1)	190.0	NM_173779	245381.0	Mm.123697	NM_173779	ENSMUSG00000044400	Sowahd	A630014H24Rik|Ankrd58	sosondowah ankyrin repeat domain family member D	protein-coding	1.21	8.3	5.13	6.84	9.41	5.02	5.98	7.6	2.16	4.02	2.01	4.07
Merged-chr1-23279944-2	chr1	23279840	23280040	+	760.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7671.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	2.42	4.02	3.42	3.22	7.77	10.98	9.97	10.29	9.64	3.01	9.55	5.64
Merged-chr5-139732966-3	chr5	139732864	139733064	+	760.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3369.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.46	8.8	12.55	7.24	12.68	7.21	5.98	10.01	9.64	13.05	21.1	4.7
Merged-chr7-95830070-3	chr7	95829971	95830171	+	760.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-341173.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	8.08	7.55	22.82	14.88	22.09	18.19	35.87	51.2	12.0	8.03	20.1	3.45
Merged-chr1-9745075-3	chr1	9744983	9745183	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173443, intron 1 of 2)	intron (NM_173443, intron 1 of 2)	-2565.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	6.46	14.34	9.13	5.23	10.23	9.72	2.66	9.03	26.55	20.59	14.07	12.22
Merged-chr19-56681389-3	chr19	56681221	56681421	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41051.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	1.21	4.28	1.71	0.0	10.64	5.33	0.66	0.7	4.72	10.54	11.56	8.46
Merged-chr7-113518644-3	chr7	113518540	113518740	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	MIR3|SINE|MIR	4806.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	9.69	9.31	6.85	8.85	8.18	6.59	3.99	11.41	14.95	8.54	16.58	8.14
Merged-chr9-21221714-3	chr9	21221628	21221828	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	17604.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	9.69	3.52	19.4	11.66	16.77	22.58	7.31	9.62	14.95	17.57	14.07	8.77
Merged-chr14-75187019-3	chr14	75186914	75187114	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50589.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	8.88	21.63	12.55	4.83	11.45	42.65	10.3	13.43	32.65	30.63	13.57	9.08
Merged-chr16-73591571-3	chr16	73591471	73591671	+	760.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	750496.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	4.85	7.04	5.7	4.83	4.91	11.92	12.62	12.73	15.54	10.54	14.07	8.14
Merged-chr13-103703598-2	chr13	103703493	103703693	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	4040.0	NR_136924	102632492.0	Mm.383874	NR_136924	ENSMUSG00000114206	Gm30551	Gm30710	predicted gene, 30551	ncRNA	6.86	3.02	6.28	6.44	5.32	8.47	3.65	10.21	11.6	7.03	16.58	6.58
Merged-chr2-59155543-2	chr2	59155447	59155647	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	Lx4A|LINE|L1	5136.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	6.46	9.81	3.99	6.44	13.91	11.6	5.65	4.88	15.14	17.07	9.55	9.4
Merged-chr5-43039650-1	chr5	43039550	43039750	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-193813.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.04	4.28	2.28	6.84	9.0	5.96	3.99	7.04	5.51	7.03	11.05	3.76
Merged-chr10-80156176-3	chr10	80156071	80156271	+	760.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 7 of 7)	intron (NM_001347117, intron 7 of 7)	6489.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	7.67	7.29	10.27	4.02	11.86	15.37	8.3	7.15	9.24	16.07	21.1	6.89
Merged-chr3-136322781-2	chr3	136322676	136322876	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3290.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.44	5.28	14.83	1.61	15.96	14.42	3.99	7.93	8.85	18.58	11.56	5.01
Merged-chr1-91282762-2	chr1	91282662	91282862	+	760.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 9 of 10)	intron (NM_001355764, intron 9 of 10)	-15576.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.85	7.04	6.85	11.26	5.73	11.92	3.65	14.8	1.77	3.01	7.54	4.7
Merged-chr7-129339420-2	chr7	129339312	129339512	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	82318.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.44	2.01	1.14	10.05	10.64	3.45	2.99	11.94	3.34	11.05	13.57	6.89
Merged-chr12-78864339-1	chr12	78864239	78864439	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	2267.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	6.46	2.01	9.13	10.46	4.09	8.15	5.98	10.63	3.54	3.01	9.55	0.31
Merged-chr1-131980744-1	chr1	131980644	131980844	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	10135.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.81	2.52	1.71	1.61	3.27	4.39	7.97	8.89	3.74	2.51	4.02	6.58
Merged-chr17-17375775-2	chr17	17375663	17375863	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025934, intron 1 of 9)	intron (NM_025934, intron 1 of 9)	1431.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	2.42	1.26	7.99	3.62	7.36	1.57	6.64	6.31	13.77	22.09	8.04	11.28
Merged-chr7-100533549-3	chr7	100533463	100533663	+	760.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3537.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.27	10.31	10.27	9.65	11.05	5.96	5.31	11.5	10.62	9.54	7.03	9.71
Merged-chr19-32486511-3	chr19	32486405	32486605	+	760.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010799, exon 1 of 5)	exon (NM_010799, exon 1 of 5)	736.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	11.71	9.31	13.69	11.66	10.64	11.29	8.64	6.28	9.24	9.54	5.53	8.77
Merged-chr9-116101424-3	chr9	116101319	116101519	+	760.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73944.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.67	9.81	10.27	17.29	11.45	10.98	11.63	13.15	11.41	6.03	11.05	6.27
Merged-chr2-180051198-3	chr2	180051101	180051301	+	760.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	8718.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	9.29	7.29	6.85	10.05	10.23	11.6	7.97	9.42	13.37	20.59	18.09	6.89
Merged-chr12-79208896-2	chr12	79208778	79208978	+	760.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030017)	promoter-TSS (NM_030017)	-35.0	NM_001313971	77974.0	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	7.67	3.27	9.13	9.25	11.45	6.27	10.3	7.6	9.44	9.04	9.04	5.33
Merged-chr9-120868549-2	chr9	120868485	120868685	+	760.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46665.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.44	9.31	14.83	6.44	12.68	8.78	7.31	10.01	4.33	3.01	4.52	4.39
Merged-chr11-87750160-3	chr11	87750073	87750273	+	760.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-6691.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	9.69	8.55	5.13	4.83	10.23	5.64	7.97	9.73	7.28	16.57	8.04	13.47
Merged-chr11-48913804-3	chr11	48913707	48913907	+	760.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045540, intron 2 of 2)	intron (NM_001045540, intron 2 of 2)	-11655.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	19.79	9.31	6.85	4.02	13.5	9.41	3.99	7.18	9.05	22.59	10.05	3.13
Merged-chr8-94861491-1	chr8	94861391	94861591	+	760.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009090, intron 4 of 8)	intron (NM_009090, intron 4 of 8)	4041.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	4.85	6.79	6.85	5.63	6.55	5.64	11.29	7.49	6.1	2.01	11.05	5.64
Merged-chr2-84660483-3	chr2	84660381	84660581	+	760.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145100, intron 2 of 4)	intron (NM_001145100, intron 2 of 4)	1402.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	8.48	4.28	10.84	6.44	9.82	12.86	1.99	12.59	12.0	10.04	14.07	4.7
Merged-chr6-114916484-3	chr6	114916405	114916605	+	760.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5316.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	12.11	9.56	7.42	5.23	16.77	10.98	6.64	16.63	16.13	4.52	10.55	8.46
Merged-chr17-25570837-3	chr17	25570748	25570948	+	760.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	37.0	NR_045176	72834.0	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	3.23	8.8	3.42	14.48	13.09	5.96	4.32	12.31	10.42	9.04	7.03	5.33
Merged-chr13-113542649-3	chr13	113542574	113542774	+	760.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39830.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.46	10.56	22.82	12.47	9.0	10.98	14.62	14.41	5.9	10.04	17.59	6.27
Merged-chr5-53194613-3	chr5	53194518	53194718	+	760.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	18834.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	4.85	8.3	7.42	7.64	17.59	8.15	14.62	19.57	12.39	12.55	10.05	11.28
Merged-chr6-72115051-3	chr6	72114958	72115158	+	760.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	7882.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	9.29	6.29	18.83	4.42	21.68	11.92	4.98	8.8	16.72	8.54	4.02	10.02
Merged-chr11-79863614-1	chr11	79863514	79863714	+	760.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98773.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.85	3.27	3.42	4.83	6.14	7.53	11.63	10.91	10.82	4.52	8.54	7.21
Merged-chr5-66246124-2	chr5	66246017	66246217	+	760.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13781.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	6.46	3.02	2.28	0.8	10.64	8.47	3.32	7.88	13.96	8.03	10.55	3.13
Merged-chr15-80091261-3	chr15	80091154	80091354	+	760.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009303)	promoter-TSS (NM_009303)	-80.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	9.69	8.3	10.84	2.82	10.23	14.74	9.63	7.18	14.36	7.53	11.56	5.01
Merged-chr10-34187944-1	chr10	34187844	34188044	+	760.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	19607.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.06	7.8	4.56	6.44	8.59	11.92	6.98	9.08	4.92	7.03	7.54	9.08
Merged-chr4-140714003-3	chr4	140713900	140714100	+	760.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173867, intron 7 of 12)	intron (NM_173867, intron 7 of 12)	12527.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	12.52	12.32	7.42	12.87	9.82	10.35	10.96	12.45	11.41	4.52	10.05	8.14
Merged-chr16-33348171-2	chr16	33348073	33348273	+	760.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32563.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	4.85	4.78	10.27	4.83	8.59	8.15	5.31	11.24	13.18	9.04	17.08	9.4
Merged-chr4-33246925-3	chr4	33246801	33247001	+	760.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033225, intron 1 of 1)	intron (NM_001033225, intron 1 of 1)	1886.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	9.29	7.04	13.69	10.86	3.68	6.27	11.96	7.4	10.23	6.03	9.04	6.89
Merged-chr7-90133446-3	chr7	90133321	90133521	+	760.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3208.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	8.48	5.79	5.13	8.04	5.32	6.9	6.64	8.55	11.21	20.59	12.06	9.71
Merged-chr7-96630647-2	chr7	96630537	96630737	+	760.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 5 of 32)	RLTR45|LTR|ERVK	170912.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	14.94	8.05	18.25	8.04	13.91	10.66	9.97	5.1	1.77	1.0	0.5	0.63
Merged-chr3-151294187-2	chr3	151294089	151294289	+	760.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143693.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	8.48	8.05	19.4	4.83	9.0	5.02	8.97	7.85	4.13	5.52	6.53	1.25
Merged-chr7-89979731-2	chr7	89979639	89979839	+	760.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1237.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	10.09	8.3	12.55	9.25	1.64	11.29	9.97	10.85	10.62	8.03	7.03	6.27
Merged-chr17-71595229-3	chr17	71595123	71595323	+	760.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	3058.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	8.48	19.87	17.11	15.28	11.45	21.32	5.31	18.79	9.24	19.58	12.56	8.46
Merged-chr13-108135929-3	chr13	108135845	108136045	+	760.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	22680.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	2.83	6.04	17.11	13.27	12.68	7.21	6.31	15.73	8.65	6.53	11.05	4.07
Merged-chr17-28967289-3	chr17	28967184	28967384	+	760.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001356299, exon 7 of 7)	3' UTR (NM_001356299, exon 7 of 7)	14068.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	6.06	8.3	9.13	12.47	15.96	21.32	8.97	11.64	13.37	5.02	8.04	10.96
Merged-chr5-134227754-3	chr5	134227647	134227847	+	760.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010876, intron 2 of 10)	intron (NM_010876, intron 2 of 10)	1878.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.86	8.3	9.13	11.26	10.64	15.68	7.31	8.69	13.57	18.08	7.03	10.02
Merged-chr7-107566026-1	chr7	107565926	107566126	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1407.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.0	0.5	3.42	3.22	4.09	8.15	5.31	4.37	7.67	2.01	7.54	2.19
Merged-chr6-98531730-1	chr6	98531630	98531830	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-188976.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	10.5	4.78	2.28	4.83	7.36	5.64	2.99	6.67	3.34	3.01	8.04	5.95
Merged-chr1-138291606-1	chr1	138291506	138291706	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17868.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	2.42	4.53	5.7	3.22	6.95	7.21	4.65	5.38	5.31	12.55	10.05	3.45
Merged-chr12-28733478-1	chr12	28733378	28733578	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	RLTR13B1|LTR|ERVK	16916.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.06	2.52	10.84	8.45	2.05	13.17	4.32	4.96	8.26	11.05	9.04	4.7
Merged-chr16-49800456-1	chr16	49800356	49800556	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55198.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.44	7.04	5.7	0.8	3.27	9.41	6.31	6.5	10.23	4.52	4.52	3.13
Merged-chr3-138114366-1	chr3	138114266	138114466	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355052, intron 11 of 21)	intron (NM_001355052, intron 11 of 21)	17287.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.0	1.01	1.71	2.41	7.77	3.45	1.66	6.31	0.59	0.0	0.0	0.63
Merged-chr12-86945317-1	chr12	86945217	86945417	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1724.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	5.65	2.77	2.28	4.83	5.73	6.59	3.32	7.65	6.88	6.53	7.03	5.33
Merged-chr6-46376535-2	chr6	46376426	46376626	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-867870.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	5.25	3.02	6.85	7.24	7.36	3.76	8.64	7.99	10.23	6.53	6.03	8.77
Merged-chr10-78412407-2	chr10	78412343	78412543	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	600.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	5.65	3.02	2.85	12.87	10.64	12.54	6.98	6.08	8.65	8.03	18.59	10.96
Merged-chr6-136692689-1	chr6	136692589	136692789	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30796.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.04	5.53	5.7	6.03	2.45	6.9	4.65	11.55	0.59	0.5	0.0	0.0
Merged-chr17-67974948-1	chr17	67974848	67975048	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	-24008.0	NM_001347410	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	12.52	30.18	43.35	13.27	3.68	1.88	1.99	2.66	7.87	4.02	3.01	3.45
Merged-chr2-79695393-1	chr2	79695293	79695493	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12387.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	10.5	2.52	3.99	1.61	6.55	0.31	3.99	7.21	7.87	0.0	7.54	5.95
Merged-chr17-88043038-1	chr17	88042938	88043138	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	21894.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	11.71	9.06	5.7	3.62	6.55	10.35	6.64	8.3	15.74	5.52	12.06	4.7
Merged-chr6-66538067-1	chr6	66537967	66538167	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355624, intron 3 of 5)	intron (NM_001355624, intron 3 of 5)	2846.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	6.06	9.81	3.42	4.42	3.68	4.7	1.33	2.8	12.0	12.05	6.53	1.57
Merged-chr2-52961628-2	chr2	52961536	52961736	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	Lx9|LINE|L1	103768.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	2.83	3.02	10.27	4.42	9.0	3.45	3.99	10.32	9.05	4.02	7.54	6.58
Merged-chr7-24112601-1	chr7	24112501	24112701	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021307, intron 1 of 4)	intron (NM_021307, intron 1 of 4)	281.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	2.02	1.51	3.99	2.82	6.55	2.82	3.32	7.93	4.72	5.02	2.01	4.7
Merged-chr11-120341836-1	chr11	120341736	120341936	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	5577.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	6.46	7.29	3.42	6.84	2.45	5.64	0.0	1.21	8.65	3.51	3.01	1.25
Merged-chr1-13297414-1	chr1	13297314	13297514	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	RSINE1|SINE|B4	75015.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	6.86	3.02	3.42	5.63	3.68	6.27	5.98	7.46	8.65	2.51	4.52	1.57
Merged-chr11-60900712-1	chr11	60900612	60900812	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13080.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	6.86	5.53	9.13	5.63	3.68	5.64	6.98	9.2	5.9	5.52	7.03	2.51
Merged-chr12-40789756-1	chr12	40789656	40789856	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-234334.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.06	2.01	6.85	2.41	4.09	1.88	5.65	8.33	3.34	0.5	1.51	2.19
Merged-chr9-116331001-1	chr9	116330901	116331101	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141821.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	8.08	2.01	10.27	3.62	7.77	3.76	3.99	9.67	3.93	1.0	10.05	7.52
Merged-chr6-6263454-1	chr6	6263354	6263554	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136905, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	14795.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	1.62	0.0	0.57	2.41	2.45	0.0	7.31	6.53	0.0	0.0	2.01	3.13
Merged-chr7-29993528-1	chr7	29993428	29993628	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033355, intron 4 of 9)	intron (NM_001033355, intron 4 of 9)	9573.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	3.23	2.52	2.28	1.61	6.95	3.45	3.32	10.74	0.0	0.5	1.51	1.88
Merged-chr2-152740593-3	chr2	152740495	152740695	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4344.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	12.11	18.36	3.42	16.89	10.23	7.53	6.64	4.09	7.47	10.04	3.01	7.52
Merged-chr11-83192255-1	chr11	83192155	83192355	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	925.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	5.65	4.28	4.56	8.85	10.64	6.27	2.33	6.7	12.78	5.52	4.02	4.39
Merged-chr8-128452088-1	chr8	128451988	128452188	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	92847.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	3.02	3.42	2.01	6.95	2.51	4.32	6.73	2.16	2.51	3.52	6.27
Merged-chr2-174335883-3	chr2	174335788	174335988	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	5799.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	20.19	5.79	9.13	13.67	6.95	9.41	10.63	13.29	15.14	11.55	10.05	10.34
Merged-chr11-59248301-1	chr11	59248201	59248401	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009522, exon 4 of 4)	3' UTR (NM_009522, exon 4 of 4)	-20034.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	8.88	4.53	11.41	6.44	6.95	8.47	5.31	10.54	0.98	1.51	9.55	6.58
Merged-chr9-110889990-1	chr9	110889890	110890090	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153354, intron 12 of 25)	intron (NR_153354, intron 12 of 25)	9668.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	5.25	1.51	3.99	1.61	1.64	1.25	1.66	3.17	5.51	1.51	2.01	2.19
Merged-chr3-79128968-1	chr3	79128868	79129068	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	15919.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.23	3.27	2.85	2.41	6.95	4.39	6.31	2.24	10.03	11.55	6.53	1.88
Merged-chr5-136979936-1	chr5	136979836	136980036	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6968.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.81	2.52	8.56	0.4	7.77	3.76	3.65	5.07	2.56	7.03	4.02	1.88
Merged-chr3-98050856-1	chr3	98050756	98050956	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	37318.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.65	2.52	11.98	0.8	6.55	2.51	2.66	9.84	3.15	7.03	8.54	10.96
Merged-chr16-16536637-1	chr16	16536537	16536737	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	Lx7|LINE|L1	-9226.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	1.62	4.02	6.85	2.41	4.91	3.76	5.98	7.4	2.95	1.51	5.02	1.88
Merged-chr13-28885300-1	chr13	28885200	28885400	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045053, exon 1 of 9)	non-coding (NR_045053, exon 1 of 9)	122.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.81	3.02	7.42	3.22	2.86	4.39	4.65	7.82	2.36	3.01	1.51	2.19
Merged-chr10-10461716-2	chr10	10461607	10461807	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	10607.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.85	3.02	2.28	6.03	5.32	1.25	2.99	3.03	11.8	19.08	19.6	5.95
Merged-chr4-106911774-1	chr4	106911674	106911874	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_023672, exon 1 of 18)	5' UTR (NM_023672, exon 1 of 18)	304.0	NM_023672	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	14.94	14.09	3.42	10.86	6.95	10.35	10.63	9.25	7.47	7.53	12.56	8.46
Merged-chr6-84096021-2	chr6	84095921	84096121	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 17 of 54)	intron (NM_001077694, intron 17 of 54)	76635.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	8.08	3.77	5.7	6.03	9.0	4.7	1.33	7.96	8.85	18.08	6.03	9.71
Merged-chr2-152904524-1	chr2	152904424	152904624	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6828.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	6.46	12.83	10.84	2.41	4.09	3.76	2.33	3.03	10.03	5.52	5.53	4.39
Merged-chr5-110780123-1	chr5	110780023	110780223	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152254)	TTS (NR_152254)	473.0	NM_019700	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	4.04	10.06	9.13	6.84	11.86	11.29	14.62	2.94	7.08	6.53	6.53	16.92
Merged-chr6-72382702-1	chr6	72382602	72382802	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-2234.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	8.08	5.03	1.71	6.84	4.09	1.88	7.97	5.94	9.05	8.54	8.04	0.0
Merged-chr1-33909245-1	chr1	33909145	33909345	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1020.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.04	8.3	7.99	5.63	3.68	1.25	2.66	6.9	5.31	1.51	1.51	1.88
Merged-chr7-88280369-3	chr7	88280220	88280420	+	759.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2235.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.02	12.58	10.84	3.62	6.55	8.47	4.98	5.64	10.03	10.54	11.56	6.89
Merged-chr3-88245923-3	chr3	88245769	88245969	+	759.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021375, exon 5 of 10)	exon (NM_021375, exon 5 of 10)	8815.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	11.71	9.31	2.28	10.86	10.64	7.53	7.97	8.78	12.0	10.04	6.53	13.78
Merged-chr17-33969121-2	chr17	33969024	33969224	+	759.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	9667.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	10.9	9.81	10.84	13.27	6.55	17.25	6.31	4.46	24.59	9.54	15.07	7.83
Merged-chr6-5052559-3	chr6	5052453	5052653	+	759.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	141393.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	8.08	9.56	4.56	7.64	15.14	6.9	11.96	14.8	9.64	6.53	20.6	11.28
Merged-chr13-119596478-2	chr13	119596379	119596579	+	759.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	PB1D7|SINE|Alu	-27340.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	7.67	9.06	3.99	10.46	6.95	8.15	9.63	17.24	26.36	13.56	25.12	12.22
Merged-chr14-9487668-3	chr14	9487567	9487767	+	759.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-396428.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	16.96	4.53	7.42	9.65	22.09	7.53	10.3	24.06	14.36	17.57	15.58	7.52
Merged-chr2-124657603-2	chr2	124657504	124657704	+	759.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199241, intron 8 of 17)	intron (NM_199241, intron 8 of 17)	4023.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.23	7.55	10.27	20.51	15.55	6.27	13.62	17.19	4.13	0.0	8.04	2.82
Merged-chrX-10786577-2	chrX	10786481	10786681	+	759.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69216.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	6.46	3.52	3.42	1.61	9.0	8.78	13.95	13.91	7.28	10.04	20.6	13.47
Merged-chr12-85526262-3	chr12	85526176	85526376	+	759.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	52386.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.04	6.54	14.26	12.87	18.82	14.11	7.64	11.86	10.03	14.56	11.05	9.08
Merged-chr6-43260889-2	chr6	43260783	43260983	+	759.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-4761.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	3.63	4.02	6.85	12.47	21.27	14.74	8.3	13.37	12.59	8.03	10.05	5.01
Merged-chr15-9714844-2	chr15	9714734	9714934	+	759.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305042, intron 8 of 36)	intron (NM_001305042, intron 8 of 36)	34034.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.04	3.02	1.14	4.02	9.82	4.39	9.3	8.21	11.01	4.02	7.54	8.14
Merged-chr4-58440548-2	chr4	58440448	58440648	+	759.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037278)	TTS (NR_037278)	550.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	7.27	7.55	4.56	8.04	9.0	7.53	2.99	4.96	21.64	9.54	19.6	6.89
Merged-chr19-47395003-2	chr19	47394903	47395103	+	759.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	69408.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	10.9	10.82	19.97	16.89	7.36	19.44	6.98	4.63	5.9	10.04	7.03	5.33
Merged-chr3-152474770-3	chr3	152474666	152474866	+	759.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	78082.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	8.88	6.79	11.98	12.47	5.73	7.21	4.65	7.07	16.52	7.03	10.55	14.72
Merged-chr4-132310055-3	chr4	132309966	132310166	+	759.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_034046)	promoter-TSS (NR_034046)	113.0	NR_034050	100217418.0	Mm.258912	NR_034050	ENSMUSG00000064604	Snora44	MBI-64	small nucleolar RNA, H/ACA box 44	snoRNA	12.52	8.8	6.28	9.65	8.18	7.21	5.98	6.5	17.11	8.03	4.52	9.71
Merged-chr19-47512058-3	chr19	47511954	47512154	+	759.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	-928.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	12.52	8.55	14.83	16.49	21.68	15.37	12.29	21.76	11.8	12.05	5.02	10.34
Merged-chr5-21387557-2	chr5	21387444	21387644	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	14871.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	7.67	2.77	2.28	12.87	9.41	8.15	5.98	12.62	11.41	5.52	11.56	5.33
Merged-chr8-107576933-2	chr8	107576834	107577034	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11548.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	6.46	7.04	3.42	3.22	5.32	7.84	2.66	11.3	11.21	12.05	13.57	7.52
Merged-chr15-25135686-2	chr15	25135601	25135801	+	759.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	278063.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.85	2.77	8.56	8.45	3.68	9.41	8.3	9.11	5.31	5.02	14.07	6.27
Merged-chr3-126693570-2	chr3	126693453	126693653	+	759.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	96602.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.65	7.04	8.56	10.46	7.36	4.39	5.65	8.47	10.23	6.03	7.03	1.88
Merged-chr11-75167608-2	chr11	75167503	75167703	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010430, intron 1 of 1)	CpG	549.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.06	3.77	6.28	2.41	8.59	4.39	11.29	7.18	11.01	10.04	16.58	7.83
Merged-chr2-128389248-1	chr2	128389148	128389348	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	40103.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	7.67	4.53	7.99	2.01	7.77	7.84	4.32	7.65	9.64	3.01	12.06	3.76
Merged-chr7-127392382-3	chr7	127392286	127392486	+	759.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198011, exon 3 of 3)	exon (NM_198011, exon 3 of 3)	1235.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	9.69	11.32	15.4	4.83	12.27	16.31	8.97	4.54	24.19	10.54	21.1	9.4
Merged-chr13-37954478-3	chr13	37954365	37954565	+	759.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39743.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.25	8.8	10.84	7.24	9.82	16.93	20.59	10.21	11.21	9.54	22.61	6.27
Merged-chr6-134794384-3	chr6	134794279	134794479	+	759.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151454, intron 1 of 1)	intron (NR_151454, intron 1 of 1)	-1271.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	9.69	5.03	5.7	7.24	6.95	9.41	2.33	8.3	12.39	10.54	20.6	5.01
Merged-chr9-116085698-1	chr9	116085598	116085798	+	759.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89665.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.4	2.01	2.28	5.23	11.86	4.08	6.31	5.94	1.57	0.0	3.01	1.57
Merged-chrX-157585812-3	chrX	157585714	157585914	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172307, intron 3 of 10)	intron (NM_172307, intron 3 of 10)	12901.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	6.46	9.06	9.13	2.01	11.86	5.64	4.65	20.13	8.46	5.02	8.54	11.28
Merged-chr4-137179018-1	chr4	137178918	137179118	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13952.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	16.15	11.07	2.28	8.45	5.73	5.02	3.65	3.76	6.1	3.01	7.03	5.95
Merged-chr7-80299728-3	chr7	80299629	80299829	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145150, intron 1 of 13)	B1_Mur4|SINE|Alu	5278.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	6.06	3.02	11.41	9.65	11.86	3.45	5.31	6.95	9.24	7.53	7.03	13.16
Merged-chr17-35021354-3	chr17	35021264	35021464	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347347, intron 8 of 16)	intron (NM_001347347, intron 8 of 16)	4785.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	8.48	6.79	1.14	6.84	1.23	5.33	6.31	8.27	10.42	13.05	8.54	4.07
Merged-chr4-105306206-2	chr4	105306096	105306296	+	759.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	148849.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	12.52	3.02	10.27	5.23	10.64	5.64	8.97	8.69	5.51	7.03	14.07	1.88
Merged-chr18-64954228-2	chr18	64954129	64954329	+	759.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	66473.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.02	1.51	3.42	2.41	6.95	4.39	3.32	5.24	18.69	22.09	20.6	12.22
Merged-chr15-72549529-2	chr15	72549430	72549630	+	759.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3251.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	11.71	5.03	5.7	7.24	8.59	9.72	5.65	8.8	11.6	11.55	10.55	8.77
Merged-chr14-122814347-2	chr14	122814244	122814444	+	759.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-98686.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	4.04	5.79	0.0	6.44	11.05	13.17	8.64	10.6	9.44	1.0	10.55	2.82
Merged-chr13-37666554-3	chr13	37666491	37666691	+	759.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-159447.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	10.09	15.09	3.42	3.22	8.18	23.2	11.29	3.79	8.06	15.57	9.04	5.01
Merged-chr4-16196833-3	chr4	16196739	16196939	+	759.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	32729.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	9.29	11.07	10.84	19.71	11.45	10.03	6.98	16.96	21.44	10.54	39.19	10.02
Merged-chr3-59127138-3	chr3	59127053	59127253	+	759.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	3609.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	7.67	15.59	12.55	8.85	16.36	7.84	8.3	12.56	7.87	1.0	14.57	11.28
Merged-chr13-8871794-1	chr13	8871694	8871894	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-58.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.23	5.03	0.0	10.05	8.59	5.96	7.97	7.37	5.7	9.54	7.03	6.58
Merged-chr15-62040459-2	chr15	62040448	62040648	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	1291.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.04	3.52	1.14	8.45	9.0	5.33	1.66	5.58	4.33	9.04	6.03	5.95
Merged-chr11-85842142-3	chr11	85842020	85842220	+	759.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009324)	TTS (NM_009324)	9505.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	12.52	12.58	8.56	7.64	28.23	18.19	6.31	18.03	10.03	15.06	11.05	4.7
Merged-chr13-42337230-2	chr13	42337130	42337330	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35754.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.65	6.04	7.99	9.65	10.23	10.98	1.33	6.98	25.18	10.54	12.06	8.14
Merged-chr4-107315175-1	chr4	107315075	107315275	+	759.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205156, intron 1 of 8)	L1MEc|LINE|L1	812.0	NM_001205156	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	5.25	2.01	0.0	0.4	0.0	2.2	3.65	1.15	11.21	9.04	7.03	11.9
Merged-chr3-41575362-2	chr3	41575267	41575467	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10487.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	6.06	5.79	5.7	9.65	4.09	4.7	2.66	9.14	14.75	3.51	13.06	7.83
Merged-chr7-16047248-2	chr7	16047137	16047337	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24608.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.85	5.79	6.28	4.83	4.5	4.39	8.64	2.13	7.87	3.51	5.02	5.95
Merged-chr17-80621091-2	chr17	80620945	80621145	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290345, intron 16 of 33)	ID_B1|SINE|B4	-43232.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	2.83	4.28	13.12	3.22	3.27	5.02	5.31	8.33	6.1	5.02	10.05	3.13
Merged-chr17-23982352-2	chr17	23982249	23982449	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7119.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	10.09	3.77	0.0	8.45	4.09	5.64	1.66	5.5	10.03	7.03	9.55	7.83
Merged-chr19-55681457-2	chr19	55681361	55681561	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20743.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.46	4.53	6.28	8.85	7.77	3.76	8.64	5.3	18.69	16.07	10.55	6.27
Merged-chr9-66831533-1	chr9	66831433	66831633	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3173.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	5.25	7.29	3.42	6.03	2.45	8.78	4.65	7.32	6.69	7.03	2.01	10.02
Merged-chr2-84555688-1	chr2	84555588	84555788	+	759.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-48815.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.4	0.75	0.0	1.61	3.68	0.63	1.33	0.56	9.44	9.04	15.58	11.28
Merged-chr10-42615310-2	chr10	42615202	42615402	+	759.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31714.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	4.85	6.04	18.25	5.23	1.64	9.41	2.66	8.83	3.34	4.52	9.04	2.19
Merged-chr3-54755499-1	chr3	54755399	54755599	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019483)	promoter-TSS (NM_019483)	-83.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	2.83	3.52	1.14	8.45	4.91	4.7	7.31	4.99	3.54	4.52	9.55	5.33
Merged-chr2-157070534-4	chr2	157070328	157070528	+	759.479187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	8837.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	1.62	3.77	14.26	3.62	8.59	4.39	5.98	7.32	3.34	5.02	8.54	3.13
Merged-chr1-166160855-3	chr1	166160761	166160961	+	759.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021610, intron 4 of 6)	intron (NM_021610, intron 4 of 6)	30640.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	10.9	8.05	8.56	10.86	9.82	13.48	10.96	15.95	21.24	11.55	17.08	13.78
Merged-chr3-55949360-2	chr3	55949265	55949465	+	759.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	102260.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	4.04	1.76	4.56	6.44	7.36	5.33	7.64	13.88	12.59	20.08	12.06	11.9
Merged-chr5-75154336-3	chr5	75154132	75154332	+	759.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	1296.0	NM_001347719	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.63	2.52	5.13	5.63	3.68	0.94	7.64	4.29	5.11	4.52	3.52	2.51
Merged-chr7-130621458-3	chr7	130621337	130621537	+	759.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_206856, intron 2 of 20)	intron (NM_206856, intron 2 of 20)	43953.0	NM_206856	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	8.08	13.08	11.41	3.62	2.86	16.62	7.64	4.63	9.64	8.54	12.06	5.64
Merged-chr11-59212497-3	chr11	59212410	59212610	+	759.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001130408, exon 5 of 5)	3' UTR (NM_001130408, exon 5 of 5)	4149.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	20.19	9.56	5.7	13.27	7.36	10.66	7.31	5.72	9.05	4.52	11.56	6.58
Merged-chr11-107510524-2	chr11	107510415	107510615	+	759.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30987.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	7.27	2.26	5.13	4.02	4.91	8.15	2.33	6.25	10.03	10.54	14.57	7.52
Merged-chr5-100750784-3	chr5	100750689	100750889	+	759.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31073.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	8.88	6.79	26.24	10.05	12.27	14.11	23.25	23.38	10.23	8.03	11.05	16.6
Merged-chr1-23399761-3	chr1	23399651	23399851	+	759.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-16576.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	12.52	8.55	15.97	8.04	6.55	7.84	9.97	16.09	12.78	9.54	17.59	7.83
Merged-chr13-96578777-2	chr13	96578673	96578873	+	759.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023420, intron 3 of 17)	RMER6B|LTR|ERVK	36038.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	3.23	7.29	1.14	5.63	11.86	10.98	11.96	9.2	8.06	10.54	9.04	7.52
Merged-chr10-111570800-1	chr10	111570700	111570900	+	759.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23473.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	2.42	3.02	1.14	14.48	6.95	7.21	6.98	6.34	2.95	5.02	5.02	6.89
Merged-chr19-27438444-3	chr19	27438279	27438479	+	759.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8342.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	4.85	2.01	4.56	6.44	8.59	4.08	11.96	6.08	8.26	6.53	8.04	5.33
Merged-chr12-32135216-3	chr12	32135106	32135306	+	759.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73132.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	2.83	11.32	6.85	12.87	4.91	6.27	2.33	14.89	20.26	20.08	11.05	9.08
Merged-chr9-95612367-3	chr9	95612270	95612470	+	759.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-25258.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	5.25	4.53	13.69	9.25	8.18	11.29	12.62	13.35	15.34	10.54	15.07	11.28
Merged-chr15-38297428-3	chr15	38297256	38297456	+	759.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289471, exon 3 of 5)	exon (NM_001289471, exon 3 of 5)	2544.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	10.9	5.03	4.56	4.42	2.05	5.02	5.65	5.61	6.29	6.03	4.52	7.83
Merged-chr15-79446015-3	chr15	79445910	79446110	+	759.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3867.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	10.5	4.78	6.85	8.45	11.86	6.9	6.98	7.32	11.6	15.06	13.57	4.7
Merged-chr5-107967054-3	chr5	107966949	107967149	+	759.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20028.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	8.48	13.08	11.98	22.12	10.64	14.42	9.63	13.6	8.06	3.51	14.07	8.14
Merged-chr2-32863367-1	chr2	32863267	32863467	+	759.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12767.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.75	0.0	0.0	0.0	3.45	2.33	2.97	1.18	4.52	3.01	1.88
Merged-chr8-24715368-2	chr8	24715296	24715496	+	759.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324489, intron 5 of 21)	intron (NM_001324489, intron 5 of 21)	10456.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	7.67	7.04	14.26	8.45	18.0	7.21	7.97	12.34	2.95	5.52	8.04	6.89
Merged-chr18-54698977-2	chr18	54698882	54699082	+	759.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	87238.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	11.31	37.98	14.83	16.89	3.27	5.02	5.31	5.64	3.74	6.03	9.04	8.77
Merged-chr14-30888486-3	chr14	30888388	30888588	+	759.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018746, intron 2 of 22)	intron (NM_018746, intron 2 of 22)	2012.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	8.08	5.79	14.83	3.22	11.05	15.68	14.95	9.48	10.42	11.05	14.07	6.27
Merged-chr15-59831685-3	chr15	59831572	59831772	+	759.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-36713.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	8.88	5.53	11.41	10.86	14.73	23.2	14.62	17.5	18.29	11.05	14.57	9.08
Merged-chrX-159696672-1	chrX	159696572	159696772	+	759.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 2 of 17)	intron (NM_001135727, intron 2 of 17)	-11929.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	6.46	4.53	3.42	5.63	8.18	7.84	10.3	13.04	4.52	5.02	11.05	0.63
Merged-chr17-43140126-3	chr17	43140028	43140228	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18163.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	9.69	12.07	6.85	6.84	22.09	11.92	8.97	19.96	18.29	8.03	12.56	5.64
Merged-chr7-80928562-3	chr7	80928469	80928669	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019951, intron 2 of 5)	intron (NM_019951, intron 2 of 5)	18981.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	4.85	9.56	11.41	13.67	3.68	6.27	8.3	14.05	9.64	6.03	12.56	10.02
Merged-chr10-31299359-3	chr10	31299260	31299460	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14045.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	10.09	7.55	10.84	6.03	11.45	9.09	11.63	11.24	13.37	7.53	4.52	11.28
Merged-chr11-29870384-3	chr11	29870287	29870487	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	L1M2|LINE|L1	-44719.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	8.08	3.02	18.83	13.67	10.23	8.15	14.62	24.81	13.77	8.54	15.58	7.52
Merged-chr4-117916018-2	chr4	117915924	117916124	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1025.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	10.09	6.79	18.25	12.87	4.91	11.92	9.97	10.96	21.83	9.04	8.54	4.07
Merged-chr17-28693284-2	chr17	28693202	28693402	+	759.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	734.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.46	9.56	3.42	3.62	8.18	6.9	6.98	8.8	20.06	15.57	9.04	7.21
Merged-chr9-122357294-2	chr9	122357205	122357405	+	759.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359207, intron 1 of 4)	intron (NM_001359207, intron 1 of 4)	5689.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	5.65	4.53	10.27	4.83	9.82	16.31	10.3	11.47	9.24	13.05	11.56	5.01
Merged-chr8-11486274-3	chr8	11486144	11486344	+	759.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7745.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	8.48	2.52	9.13	2.41	9.41	17.25	4.32	10.91	18.88	11.55	11.05	15.98
Merged-chr17-56553184-3	chr17	56553089	56553289	+	759.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130128, intron 2 of 3)	intron (NR_130128, intron 2 of 3)	1198.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	6.46	8.3	5.7	14.08	11.86	12.23	4.98	9.17	13.18	15.06	18.09	9.4
Merged-chr7-131801525-2	chr7	131801437	131801637	+	759.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-164923.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	5.25	8.8	15.4	9.65	17.18	6.27	6.31	10.07	8.06	14.06	8.54	4.39
Merged-chr14-47506833-3	chr14	47506738	47506938	+	759.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 2 of 5)	intron (NR_027414, intron 2 of 5)	34277.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	8.08	8.05	7.99	5.63	11.86	7.21	6.98	7.63	30.88	26.61	21.61	11.9
Merged-chr3-89908553-3	chr3	89908457	89908657	+	759.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4639.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	10.09	8.05	14.83	4.02	20.86	6.59	3.99	9.87	10.42	17.07	14.57	4.7
Merged-chr13-103768132-3	chr13	103768025	103768225	+	759.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361085, intron 2 of 11)	intron (NM_001361085, intron 2 of 11)	-3543.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	9.29	5.53	13.69	7.24	13.91	8.47	9.63	17.55	11.01	7.53	17.59	8.46
Merged-chr9-99498117-3	chr9	99498012	99498212	+	759.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	27691.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	5.25	8.05	9.7	3.22	13.09	20.7	8.3	12.79	16.52	7.03	15.07	6.27
Merged-chr12-110598671-3	chr12	110598466	110598666	+	759.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2829.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	4.04	3.52	3.99	4.42	6.95	5.96	1.0	9.03	5.11	5.52	9.04	7.83
Merged-chr1-156030045-2	chr1	156029963	156030163	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	4754.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.46	6.04	11.41	3.22	11.86	2.82	6.98	7.82	11.6	9.54	19.6	5.33
Merged-chr2-153060324-2	chr2	153060204	153060404	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5651.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.0	0.75	0.0	0.0	4.91	5.33	0.66	5.1	24.78	14.06	19.6	7.83
Merged-chr3-96082942-1	chr3	96082842	96083042	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21585.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	4.44	2.01	6.85	4.02	3.27	1.57	4.65	8.38	5.11	1.51	10.05	4.07
Merged-chr17-64591909-1	chr17	64591809	64592009	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9740.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.81	5.28	2.28	2.82	6.95	2.82	2.33	1.6	8.46	5.52	15.07	3.76
Merged-chr2-70838688-2	chr2	70838566	70838766	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13186.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	8.08	4.53	6.85	6.84	6.95	10.35	5.98	10.23	14.55	7.53	8.54	6.27
Merged-chr14-103488893-1	chr14	103488793	103488993	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24448.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.83	3.02	1.14	1.61	9.41	2.51	2.66	7.01	5.51	9.04	13.06	2.19
Merged-chr13-75342203-1	chr13	75342103	75342303	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	252346.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	4.85	0.0	1.14	4.02	8.18	2.51	6.64	8.13	4.72	6.03	7.03	5.64
Merged-chr2-170239262-2	chr2	170239172	170239372	+	759.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96597.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.09	2.52	9.7	4.02	3.27	7.53	7.97	7.4	4.72	3.01	8.04	5.95
Merged-chr1-184020709-1	chr1	184020609	184020809	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13289.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	1.21	4.28	5.13	3.22	6.14	4.39	3.99	10.15	0.59	2.51	1.0	2.82
Merged-chr10-24630755-2	chr10	24630654	24630854	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35312.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	8.48	5.28	5.7	6.03	3.27	3.14	4.65	7.57	7.87	6.53	8.54	11.28
Merged-chr14-68048529-1	chr14	68048429	68048629	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35334.0	NM_010910	18039.0	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	1.62	0.0	5.7	4.02	1.23	5.33	8.97	7.6	2.75	1.0	0.0	0.94
Merged-chr19-53783770-1	chr19	53783670	53783870	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	Lx9|LINE|L1	106464.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	3.23	3.52	6.28	5.63	3.27	5.02	3.32	6.0	6.69	11.55	18.09	14.1
Merged-chrX-48345464-1	chrX	48345364	48345564	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178782, intron 2 of 14)	CpG	4106.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	8.08	4.28	4.56	7.24	12.27	5.02	1.0	8.33	6.29	10.54	4.02	5.64
Merged-chr17-31072166-1	chr17	31072066	31072266	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	L3|LINE|CR1	14472.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.02	4.53	2.28	1.61	4.5	2.51	7.31	5.97	1.77	1.0	3.01	0.63
Merged-chr1-149939467-1	chr1	149939367	149939567	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17028.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.42	4.78	3.42	3.22	11.45	2.51	7.97	7.79	8.85	1.0	10.55	8.14
Merged-chr7-34348411-1	chr7	34348311	34348511	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025948, intron 9 of 10)	intron (NM_025948, intron 9 of 10)	41294.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	1.21	2.52	2.85	0.8	3.27	0.94	4.98	6.36	2.16	1.0	3.01	4.39
Merged-chr4-116665129-1	chr4	116665029	116665229	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13455.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	4.04	0.0	2.28	1.61	0.82	10.66	3.65	6.28	3.34	3.51	3.52	4.39
Merged-chr1-118525447-1	chr1	118525347	118525547	+	759.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001359346, exon 22 of 38)	exon (NM_001359346, exon 22 of 38)	-66182.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	2.83	3.52	6.85	6.84	0.41	2.2	3.65	6.48	1.77	4.02	1.0	0.94
Merged-chr6-32519542-1	chr6	32519442	32519642	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	8401.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.44	2.77	3.42	4.83	3.68	8.78	4.98	8.78	3.34	2.51	3.52	5.64
Merged-chr13-60719975-1	chr13	60719875	60720075	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 8 of 26)	intron (NM_134062, intron 8 of 26)	66389.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	1.51	0.0	2.82	7.77	3.14	1.33	12.42	2.75	3.01	3.01	3.76
Merged-chrX-38468338-1	chrX	38468238	38468438	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11878.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	5.65	2.52	4.56	3.22	9.0	8.78	5.31	10.04	8.65	8.03	19.09	4.07
Merged-chr10-4675157-1	chr10	4675057	4675257	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126357, intron 2 of 7)	intron (NR_126357, intron 2 of 7)	-35001.0	NM_001302531	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	6.06	4.78	7.99	2.41	6.55	4.08	6.31	9.31	2.16	1.0	5.02	5.95
Merged-chr16-13733836-1	chr16	13733736	13733936	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-3352.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	5.25	6.04	1.14	3.62	10.23	5.64	13.62	2.05	5.31	5.02	5.53	5.33
Merged-chr15-31565826-1	chr15	31565726	31565926	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3007.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.81	2.01	0.0	0.0	3.27	2.51	8.64	7.54	3.93	4.52	2.01	3.76
Merged-chr6-72534249-2	chr6	72534155	72534355	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10136.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	5.65	7.8	5.7	4.83	15.14	10.66	6.64	6.9	8.85	9.04	7.03	9.71
Merged-chr11-58982326-1	chr11	58982226	58982426	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053168, intron 3 of 5)	intron (NM_053168, intron 3 of 5)	4233.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	4.85	2.01	0.57	0.0	3.68	1.88	1.33	0.53	16.33	12.55	8.04	6.89
Merged-chr2-117114624-1	chr2	117114524	117114724	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6447.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.85	1.51	6.85	3.62	6.14	2.82	2.66	10.6	3.74	4.02	6.53	3.45
Merged-chr8-128283025-1	chr8	128282925	128283125	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4800.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	8.48	1.01	3.99	4.83	6.14	5.33	4.65	7.01	5.9	4.02	5.02	2.51
Merged-chr3-10301998-1	chr3	10301898	10302098	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029310)	promoter-TSS (NM_029310)	-815.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.23	2.77	3.42	12.87	7.36	10.03	2.99	8.19	2.16	2.51	10.55	0.31
Merged-chr5-45385098-1	chr5	45384998	45385198	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	39302.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	2.02	1.26	1.14	6.03	4.09	7.21	7.64	7.23	2.16	0.0	0.0	0.0
Merged-chr12-119470452-3	chr12	119470338	119470538	+	759.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	27028.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	11.71	6.79	12.55	14.08	6.95	9.41	6.31	13.68	10.62	20.08	18.09	6.58
Merged-chr3-90628172-1	chr3	90628072	90628272	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15278.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	4.85	4.53	6.85	9.25	0.82	0.94	3.99	0.7	3.34	4.02	7.54	5.01
Merged-chr2-156189392-1	chr2	156189292	156189492	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7255.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.63	1.01	2.85	1.61	9.0	5.96	3.32	6.45	4.92	3.01	6.03	1.25
Merged-chr6-145779547-2	chr6	145779457	145779657	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28826.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.62	2.52	3.42	1.61	2.45	2.82	6.31	9.53	11.6	5.52	20.1	5.01
Merged-chr8-11016750-1	chr8	11016650	11016850	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	PB1D10|SINE|Alu	-8320.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	1.01	5.7	1.61	6.14	3.14	2.33	7.88	3.74	1.0	4.02	3.76
Merged-chr12-70005312-2	chr12	70005205	70005405	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-18303.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	4.85	10.56	6.28	7.24	6.14	7.21	5.98	9.7	9.44	8.54	21.61	6.58
Merged-chr4-58999893-2	chr4	58999795	58999995	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3298.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	8.88	7.04	5.7	4.83	12.68	6.27	5.98	7.88	12.78	7.03	4.02	7.21
Merged-chr8-111247944-1	chr8	111247844	111248044	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	11258.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	8.48	5.53	7.99	12.07	3.27	9.72	6.64	5.92	6.1	3.01	6.53	4.07
Merged-chr1-186554268-1	chr1	186554168	186554368	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131124, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	4413.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.04	2.01	1.14	7.24	5.73	1.25	7.97	5.38	2.16	5.02	1.51	8.46
Merged-chr17-23874039-1	chr17	23873939	23874139	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020487)	TTS (NM_020487)	5967.0	NM_020487	57256.0	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	5.65	2.52	2.28	4.83	3.27	3.45	1.66	1.32	16.33	17.07	13.06	6.58
Merged-chr1-75445943-3	chr1	75445836	75446036	+	758.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4574.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	12.52	4.78	13.12	6.84	8.59	6.9	4.65	10.29	15.14	7.53	12.06	10.34
Merged-chr5-64038682-3	chr5	64038576	64038776	+	758.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6297.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	7.67	6.54	14.26	8.45	9.82	6.27	6.98	12.98	17.31	15.06	19.09	10.02
Merged-chr6-88198632-3	chr6	88198532	88198732	+	758.911072	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008090)	promoter-TSS (NM_008090)	-32.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	11.31	9.31	13.69	13.27	3.68	8.78	4.65	10.12	11.41	20.08	20.1	9.71
Merged-chr18-56924969-3	chr18	56924969	56925169	+	758.904785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	CpG	479.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	11.31	10.82	14.26	10.46	13.91	10.98	10.63	10.37	12.98	6.03	18.59	10.96
Merged-chr17-35240603-3	chr17	35240545	35240745	+	758.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1101.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	13.33	11.57	8.56	4.83	8.59	10.66	3.32	3.53	10.42	11.05	5.02	6.27
Merged-chr2-166654222-2	chr2	166654118	166654318	+	758.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	59614.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	8.88	4.53	16.54	8.45	8.59	11.92	2.66	6.48	12.19	11.05	18.09	6.27
Merged-chr3-108878552-2	chr3	108878436	108878636	+	758.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	11472.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.85	7.55	2.85	1.21	2.86	7.53	8.97	5.07	6.49	12.55	9.04	9.4
Merged-chr3-21951827-2	chr3	21951728	21951928	+	758.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-124824.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.46	4.78	9.13	6.44	10.64	6.59	5.31	6.7	9.83	13.56	8.54	6.27
Merged-chr6-43404686-1	chr6	43404586	43404786	+	758.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-37743.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	4.04	5.28	5.7	4.83	9.41	7.84	10.63	8.69	3.54	3.51	7.54	4.07
Merged-chr5-114851896-1	chr5	114851796	114851996	+	758.833313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_105748)	promoter-TSS (NR_105748)	-52.0	NR_105748	102466620.0		NR_105748	ENSMUSG00000098343	Mir6240	Gm27850|mmu-mir-6240	microRNA 6240	ncRNA	36.34	50.81	34.23	20.91	10.64	8.15	1.33	0.03	8.65	4.52	2.01	11.59
Merged-chr4-95216258-3	chr4	95216155	95216355	+	758.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-164033.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.85	4.28	3.99	5.63	11.86	11.29	3.99	9.98	12.0	6.03	11.56	6.27
Merged-chr19-11494734-3	chr19	11494622	11494822	+	758.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	2684.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	8.88	12.07	10.27	18.9	13.5	7.53	8.97	11.16	21.44	12.55	20.1	5.64
Merged-chr19-23085829-1	chr19	23085729	23085929	+	758.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55397.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.4	0.0	0.0	2.01	0.0	1.25	0.0	0.14	8.46	15.57	16.08	10.34
Merged-chr12-98737427-1	chr12	98737327	98737527	+	758.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-22.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	4.04	7.8	1.14	4.83	7.36	3.45	9.63	7.96	3.34	2.51	5.53	6.27
Merged-chr1-184534285-3	chr1	184534225	184534425	+	758.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	(TG)n|Simple_repeat|Simple_repeat	23366.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.86	7.29	12.55	6.03	8.59	12.54	5.65	8.75	18.49	8.54	8.54	9.4
Merged-chr19-32987929-3	chr19	32987847	32988047	+	758.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169165.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	10.5	6.54	7.42	6.44	11.45	12.23	9.3	11.27	11.21	6.53	13.57	5.64
Merged-chr14-79562744-6	chr14	79562638	79562838	+	758.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286412, intron 3 of 7)	intron (NM_001286412, intron 3 of 7)	-24922.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	7.27	2.26	2.28	5.23	4.91	5.33	5.98	5.66	6.1	10.54	9.55	9.4
Merged-chr19-17337231-2	chr19	17337124	17337324	+	758.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	2281.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.65	1.76	2.85	3.62	5.73	9.09	10.96	5.66	19.87	7.53	14.07	9.08
Merged-chr2-116923408-1	chr2	116923308	116923508	+	758.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23256.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	2.52	5.13	8.85	7.36	6.59	8.64	5.94	1.77	4.52	5.53	3.76
Merged-chr15-102140761-3	chr15	102140666	102140866	+	758.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3420.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	11.31	7.8	13.69	12.07	10.64	10.35	14.28	17.8	10.82	17.07	15.58	10.65
Merged-chr8-36093790-2	chr8	36093698	36093898	+	758.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1030.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	9.69	6.29	10.84	11.26	5.32	9.41	10.63	13.12	6.49	6.53	6.03	6.89
Merged-chr18-12655276-2	chr18	12655172	12655372	+	758.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	11739.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.63	2.26	7.99	8.85	5.73	3.14	8.64	6.11	13.57	9.54	24.62	8.77
Merged-chr6-121077378-3	chr6	121077248	121077448	+	758.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	4279.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	4.44	4.78	0.57	6.03	2.45	7.21	7.31	6.84	12.78	13.56	8.04	6.89
Merged-chr8-57602053-1	chr8	57601953	57602153	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-49700.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	3.23	2.26	2.85	0.0	0.41	10.66	5.31	6.7	2.75	0.5	4.02	9.08
Merged-chr10-20655113-1	chr10	20655013	20655213	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	69965.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.4	4.53	9.7	4.42	5.73	6.59	11.63	6.56	5.31	4.02	5.02	4.7
Merged-chr1-106071438-1	chr1	106071338	106071538	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81032.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	6.86	0.5	5.13	3.22	10.23	6.59	5.31	9.22	6.49	6.53	9.04	6.27
Merged-chr18-4234474-3	chr18	4234386	4234586	+	758.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	68654.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	9.69	8.05	23.96	4.02	10.64	10.03	7.97	18.06	22.82	7.03	12.56	7.83
Merged-chr8-105226055-1	chr8	105225955	105226155	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145604, intron 1 of 15)	intron (NM_145604, intron 1 of 15)	867.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	2.02	2.01	0.0	3.62	6.14	5.64	7.64	7.79	6.88	4.52	5.53	3.45
Merged-chr15-101138830-3	chr15	101138735	101138935	+	758.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277255, intron 10 of 11)	intron (NM_001277255, intron 10 of 11)	10313.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.25	10.82	15.97	11.26	8.59	5.33	5.65	7.15	15.93	20.08	25.63	14.41
Merged-chr19-11588348-2	chr19	11588253	11588453	+	758.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	16451.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	3.63	2.77	6.85	5.63	9.0	7.84	4.98	7.68	10.62	7.03	14.57	3.45
Merged-chr15-91260118-2	chr15	91259989	91260189	+	758.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68082.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	12.92	8.55	5.7	14.48	5.73	9.72	4.65	13.29	3.93	1.51	3.01	3.13
Merged-chr15-95792570-2	chr15	95792463	95792663	+	758.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	1720.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.06	2.52	1.14	3.62	4.09	10.35	11.63	8.02	8.06	8.54	3.52	14.1
Merged-chr7-105779127-3	chr7	105779029	105779229	+	758.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 1 of 20)	MIRb|SINE|MIR	8421.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	10.5	11.32	18.83	15.28	7.77	8.15	5.65	12.17	7.67	4.52	12.56	11.28
Merged-chr13-102669080-2	chr13	102668977	102669177	+	758.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24470.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	12.52	9.56	10.84	4.02	6.95	2.82	3.99	9.56	12.78	10.04	19.09	11.59
Merged-chr19-41386740-3	chr19	41386635	41386835	+	758.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1665.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	10.5	7.04	6.85	12.07	6.55	5.02	11.63	11.64	11.01	6.03	4.02	10.65
Merged-chr19-32384933-3	chr19	32384830	32385030	+	758.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	3119.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.46	9.56	18.25	7.64	11.45	8.15	5.65	12.17	12.0	13.05	18.09	9.71
Merged-chr2-165329997-3	chr2	165329910	165330110	+	758.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3531.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.06	8.05	13.69	5.23	11.86	11.29	18.27	27.36	10.82	10.04	13.06	10.65
Merged-chr14-74944842-2	chr14	74944743	74944943	+	758.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	3034.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	8.08	11.57	14.26	14.48	10.64	9.09	4.98	7.57	8.65	9.54	5.02	16.92
Merged-chr8-105362155-2	chr8	105362057	105362257	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081332, intron 12 of 15)	intron (NM_001081332, intron 12 of 15)	-13224.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	7.67	3.77	5.13	8.04	7.77	5.33	5.98	8.07	12.59	13.05	13.06	5.01
Merged-chr12-85993089-1	chr12	85992989	85993189	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	85952.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	2.42	1.01	1.14	2.41	9.82	6.59	2.99	6.87	5.31	2.51	9.55	5.64
Merged-chr6-16863116-1	chr6	16863016	16863216	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	35325.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	2.42	2.01	0.0	6.03	4.91	1.88	2.66	5.89	3.34	6.03	4.52	1.57
Merged-chr5-3368424-1	chr5	3368324	3368524	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	24531.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.42	3.77	3.99	6.03	5.73	0.0	5.98	7.18	7.47	6.03	5.53	3.76
Merged-chr1-86215439-2	chr1	86215328	86215528	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	MTD|LTR|ERVL-MaLR	60648.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	6.46	2.01	3.42	2.41	9.41	7.53	3.32	13.12	6.88	4.02	5.02	5.64
Merged-chr17-31296670-2	chr17	31296568	31296768	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001242427, exon 1 of 20)	5' UTR (NM_001242427, exon 1 of 20)	444.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	6.06	7.04	10.27	4.83	8.18	11.6	2.66	6.25	11.8	3.01	13.06	2.82
Merged-chr6-17749799-1	chr6	17749699	17749899	+	758.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	629.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	2.02	4.02	3.42	3.62	6.55	2.2	3.65	1.74	10.82	5.02	13.57	7.21
Merged-chr3-107110985-1	chr3	107110885	107111085	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	9418.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.04	0.0	0.0	1.61	8.18	10.03	1.0	9.81	4.52	6.53	2.51	1.57
Merged-chr16-20241313-2	chr16	20241196	20241396	+	758.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198599)	promoter-TSS (NM_198599)	62.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	10.9	5.79	3.99	6.44	2.45	10.35	4.65	1.18	5.11	1.51	4.52	5.95
Merged-chr16-45110772-2	chr16	45110700	45110900	+	758.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026439, intron 3 of 7)	RMER5|LTR|ERV1	16789.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	10.09	6.04	3.99	6.44	2.86	7.84	3.65	6.11	3.15	1.0	1.51	0.31
Merged-chr6-127420031-2	chr6	127419926	127420126	+	758.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26814.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	4.04	10.31	19.4	21.72	5.32	4.39	7.97	6.06	0.2	0.0	0.5	0.0
Merged-chr3-37038038-2	chr3	37037956	37038156	+	758.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172679, intron 74 of 85)	intron (NM_172679, intron 74 of 85)	-25600.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.81	3.77	2.28	1.61	6.14	6.59	9.97	9.17	8.46	9.54	3.01	4.39
Merged-chr14-121931156-3	chr14	121931058	121931258	+	758.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-15384.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	12.92	11.07	13.12	7.64	8.59	10.03	4.32	7.23	10.82	12.55	14.07	8.46
Merged-chr7-102100253-2	chr7	102100154	102100354	+	758.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291354)	promoter-TSS (NM_001291354)	-25.0	NM_007491	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	3.63	6.54	2.28	1.61	8.59	9.09	3.99	5.92	12.78	6.03	13.57	9.71
Merged-chr14-25800368-3	chr14	25800281	25800481	+	758.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31525.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	11.71	2.52	10.27	5.63	6.55	10.66	4.65	11.24	11.8	15.57	15.58	3.45
Merged-chr15-61988009-3	chr15	61987938	61988138	+	758.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010849, exon 2 of 3)	exon (NM_010849, exon 2 of 3)	2697.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.85	8.05	6.28	7.64	7.36	12.23	9.3	6.79	10.42	8.03	9.04	3.13
Merged-chr15-13244491-2	chr15	13244401	13244601	+	758.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70826.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.44	3.77	5.13	6.03	14.32	0.63	12.62	13.77	12.19	5.52	16.08	5.95
Merged-chr1-64200684-3	chr1	64200575	64200775	+	758.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	10.9	9.81	14.26	7.24	11.05	5.02	6.98	12.67	10.42	11.55	13.57	13.16
Merged-chr2-80062844-2	chr2	80062730	80062930	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	L1_Mus3|LINE|L1	-23928.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	3.63	2.77	13.69	8.85	5.32	10.03	14.95	15.9	6.1	2.01	8.54	6.89
Merged-chr19-35152061-2	chr19	35151961	35152161	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186665.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	5.25	6.04	10.84	15.69	12.27	3.45	13.62	13.71	6.29	2.51	12.06	2.82
Merged-chr2-163580349-2	chr2	163580246	163580446	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21968.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.81	8.3	12.55	4.42	11.86	15.37	8.97	7.54	2.95	2.51	4.02	6.58
Merged-chr11-30900514-2	chr11	30900425	30900625	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	15167.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	10.5	6.54	13.12	6.84	4.91	6.59	9.3	2.41	16.92	7.03	38.69	9.4
Merged-chr10-20828509-2	chr10	20828423	20828623	+	758.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-103445.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.85	6.04	3.42	7.24	11.86	12.86	4.65	12.45	13.37	8.54	9.04	5.95
Merged-chr17-21516474-3	chr17	21516367	21516567	+	758.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19072.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	4.85	12.07	5.7	8.45	9.82	5.02	8.3	5.97	10.23	11.55	11.56	10.02
Merged-chr17-48285807-1	chr17	48285707	48285907	+	758.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-14231.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.49	16.07	14.57	14.72
Merged-chr11-119258674-1	chr11	119258574	119258774	+	758.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175430, intron 16 of 18)	MLT2B2|LTR|ERVL	-9289.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.23	7.55	1.71	4.02	7.36	8.78	2.66	6.95	4.33	7.53	9.55	4.07
Merged-chr1-91092144-1	chr1	91092044	91092244	+	758.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38700.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.23	2.26	2.28	6.44	2.86	8.47	10.63	6.56	7.08	5.52	7.54	2.19
Merged-chr2-43555254-3	chr2	43555160	43555360	+	758.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289594)	promoter-TSS (NM_001289594)	-65.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	8.48	14.34	8.56	5.63	15.96	19.76	10.63	11.86	12.98	12.05	10.55	9.71
Merged-chr18-38159367-1	chr18	38159267	38159467	+	758.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50395.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	5.65	2.52	5.7	0.0	2.05	2.51	2.66	3.81	12.19	12.05	13.06	4.07
Merged-chr4-58913752-3	chr4	58913632	58913832	+	758.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-983.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	9.29	7.04	2.85	4.83	8.59	6.9	4.98	11.75	16.52	9.04	10.55	4.39
Merged-chr13-98834486-2	chr13	98834438	98834638	+	758.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19089.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.81	0.75	2.85	1.61	10.64	2.2	2.33	2.24	2.95	1.0	4.52	5.33
Merged-chr7-49633549-2	chr7	49633458	49633658	+	758.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001005232, exon 3 of 4)	exon (NM_001005232, exon 3 of 4)	3277.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	7.67	9.31	15.97	6.84	7.36	11.6	4.65	8.33	11.8	8.54	5.53	2.51
Merged-chr12-110683011-2	chr12	110682814	110683014	+	758.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-295.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	5.25	9.81	3.99	5.23	3.27	4.39	3.99	5.72	1.57	2.51	4.02	3.76
Merged-chr7-6343681-1	chr7	6343581	6343781	+	758.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13247.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0.81	2.52	0.0	3.62	7.77	5.64	12.62	7.96	4.33	3.01	7.03	1.88
Merged-chr16-25036536-2	chr16	25036436	25036636	+	758.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23103.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.04	6.79	7.99	4.83	12.68	14.11	4.98	10.43	9.44	16.07	11.05	2.19
Merged-chr4-137389158-3	chr4	137389063	137389263	+	758.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20628.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	14.13	10.06	10.84	8.85	7.36	15.37	7.64	12.36	10.23	9.54	6.53	7.83
Merged-chr6-57756859-3	chr6	57756774	57756974	+	758.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	54419.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	6.86	7.04	15.4	17.29	11.05	3.76	11.63	15.45	13.57	4.02	14.07	11.59
Merged-chr12-102395768-3	chr12	102395658	102395858	+	758.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011175, exon 12 of 14)	exon (NM_011175, exon 12 of 14)	44055.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.02	7.55	12.55	12.87	7.77	10.03	24.91	22.93	11.21	7.53	4.02	14.41
Merged-chr12-12289377-3	chr12	12289268	12289468	+	758.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27229.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	9.69	5.28	13.69	5.63	8.59	5.33	6.98	6.39	17.31	3.51	20.6	11.59
Merged-chr19-4086501-2	chr19	4086407	4086607	+	758.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001160253, exon 5 of 6)	exon (NM_001160253, exon 5 of 6)	2988.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	4.44	6.79	1.71	9.25	0.82	14.11	5.65	5.89	11.01	12.05	17.59	4.39
Merged-chr19-6976234-2	chr19	6976161	6976361	+	758.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	1213.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	7.67	4.78	5.7	4.02	9.41	6.59	3.99	6.53	12.59	10.04	7.03	7.52
Merged-chr7-133032694-2	chr7	133032603	133032803	+	758.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-17456.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.85	6.29	1.14	2.41	8.18	6.9	4.32	8.21	15.74	6.03	15.58	8.14
Merged-chr4-83512400-2	chr4	83512278	83512478	+	758.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-13167.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	8.08	4.53	18.25	8.04	8.59	11.6	3.99	5.69	18.88	8.54	7.03	11.59
Merged-chr12-84202813-2	chr12	84202700	84202900	+	758.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	Tigger16a|DNA|TcMar-Tigger	-8785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.88	4.28	1.14	1.61	11.45	12.23	5.31	13.23	8.46	9.54	9.55	8.77
Merged-chr17-65786407-3	chr17	65786314	65786514	+	758.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	3059.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	8.88	8.8	14.83	6.44	12.68	10.35	6.64	13.65	10.23	8.54	20.6	9.4
Merged-chrX-113785523-2	chrX	113785409	113785609	+	758.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289734, intron 11 of 15)	Lx3A|LINE|L1	487253.0	NM_001142570	93837.0	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund family transcription factor 2	protein-coding	3.63	4.28	7.42	10.46	6.95	9.09	14.28	3.98	10.23	12.05	28.14	10.34
Merged-chr1-173879421-2	chr1	173879323	173879523	+	758.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	764.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	9.29	3.77	14.26	8.04	17.59	28.85	13.95	11.41	6.88	8.54	6.53	5.95
Merged-chr1-140245693-3	chr1	140245587	140245787	+	758.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081027)	promoter-TSS (NM_001081027)	-570.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	5.25	6.79	8.56	11.66	5.73	5.64	8.64	10.63	9.44	12.55	8.04	7.83
Merged-chr2-160451621-3	chr2	160451553	160451753	+	758.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84588.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.25	5.28	10.84	8.04	11.05	7.53	4.32	9.62	19.67	14.56	14.57	8.46
Merged-chr6-129534279-3	chr6	129534170	129534370	+	758.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-986.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	14.94	8.8	13.69	10.46	8.59	14.42	5.65	6.08	10.82	15.57	7.03	10.96
Merged-chr11-69793596-2	chr11	69793497	69793697	+	758.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009601, exon 6 of 11)	exon (NM_009601, exon 6 of 11)	2340.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	9.69	8.3	14.83	6.84	11.86	8.78	7.31	7.26	4.92	7.03	10.05	9.4
Merged-chr1-80639160-2	chr1	80639064	80639264	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	MTEa|LTR|ERVL-MaLR	26188.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	8.08	1.51	4.56	4.02	7.77	11.6	4.98	8.41	11.21	16.57	13.57	8.77
Merged-chr1-92834195-1	chr1	92834095	92834295	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	2550.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	6.46	7.29	3.42	2.01	10.64	7.84	4.65	6.5	4.13	3.51	5.53	7.83
Merged-chrX-159156057-2	chrX	159155977	159156177	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99705.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	6.46	5.28	3.42	12.87	10.23	5.02	3.32	11.02	7.08	6.53	13.06	8.77
Merged-chr18-46475756-1	chr18	46475656	46475856	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-9940.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	5.25	1.51	3.42	1.61	10.64	12.23	0.33	0.22	6.49	1.51	2.01	0.31
Merged-chr10-61370961-1	chr10	61370861	61371061	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12562.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	2.83	6.04	17.11	8.45	13.09	3.45	4.65	6.87	6.49	7.53	10.05	4.7
Merged-chr10-13540087-3	chr10	13539983	13540183	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019961, intron 3 of 11)	intron (NM_019961, intron 3 of 11)	-12824.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	8.08	8.55	11.98	8.04	6.95	6.59	6.31	11.64	23.21	17.07	24.62	20.36
Merged-chr5-143235593-1	chr5	143235493	143235693	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_040700)	TTS (NR_040700)	430.0	NM_177681	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	11.31	10.82	11.41	5.63	5.73	7.53	3.32	4.65	10.23	8.03	8.04	6.89
Merged-chr17-57292457-3	chr17	57292324	57292524	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	B4A|SINE|B4	13324.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	11.71	8.8	4.56	1.21	6.55	5.33	9.3	6.2	13.96	8.03	10.05	3.45
Merged-chr15-63648493-1	chr15	63648393	63648593	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160246.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	6.06	3.52	5.13	6.44	3.68	7.84	2.33	7.07	4.52	3.51	5.02	9.08
Merged-chr14-120357064-1	chr14	120356964	120357164	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	50612.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.62	1.51	0.0	0.4	4.5	9.41	2.33	7.63	10.03	5.02	6.53	0.63
Merged-chr8-126945081-1	chr8	126944981	126945181	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	840.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	8.08	5.28	4.56	1.61	6.55	4.39	7.97	5.02	4.13	4.52	9.55	7.52
Merged-chr10-66908798-2	chr10	66908694	66908894	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	11590.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	1.62	3.02	4.56	5.23	3.68	6.59	11.63	12.08	6.88	10.54	12.06	6.89
Merged-chr7-126285482-1	chr7	126285382	126285582	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145587, intron 1 of 3)	intron (NM_145587, intron 1 of 3)	12986.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	6.86	3.27	6.85	2.41	10.23	7.21	5.65	7.51	5.7	1.0	5.53	4.7
Merged-chr10-95529613-1	chr10	95529513	95529713	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	14451.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	10.9	7.04	6.28	2.41	11.45	5.96	1.99	5.1	5.51	9.54	8.54	7.21
Merged-chr12-82234797-1	chr12	82234697	82234897	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	MLTR14|LTR|ERV1	64781.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.81	1.01	1.14	4.83	4.09	7.84	2.33	6.56	2.36	5.52	2.51	6.89
Merged-chr14-66805627-2	chr14	66805540	66805740	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 13 of 13)	intron (NM_009955, intron 13 of 13)	62960.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	6.46	3.77	7.99	7.24	6.55	4.39	4.32	12.0	13.37	9.04	23.11	10.65
Merged-chr6-125163861-1	chr6	125163761	125163961	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289726, intron 2 of 6)	intron (NM_001289726, intron 2 of 6)	1912.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	4.44	4.28	2.28	0.8	0.82	2.2	4.98	3.31	4.13	7.03	3.01	7.21
Merged-chr17-47509221-2	chr17	47509119	47509319	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4168.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	10.5	7.04	4.56	2.82	11.05	10.35	1.0	6.45	9.83	4.52	6.53	7.83
Merged-chrX-106187943-2	chrX	106187858	106188058	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008828, intron 1 of 10)	intron (NM_008828, intron 1 of 10)	858.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	7.67	2.26	2.85	2.41	6.55	6.59	3.65	7.99	6.29	5.52	4.02	6.89
Merged-chr4-95417326-1	chr4	95417226	95417426	+	758.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	5.25	2.77	0.0	8.45	5.32	1.57	6.64	9.9	8.85	10.54	13.06	11.59
Merged-chr2-5080251-1	chr2	5080151	5080351	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16134.0	NM_001356487	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	9.69	9.56	4.56	2.82	0.82	4.39	2.99	0.81	10.62	1.51	1.0	0.0
Merged-chr5-76292875-1	chr5	76292775	76292975	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007715, intron 2 of 22)	L1_Mus2|LINE|L1	10627.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	6.06	3.77	9.13	2.41	3.68	10.66	10.63	4.82	7.67	4.02	4.02	2.51
Merged-chr17-87155903-2	chr17	87155804	87156004	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39038.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	5.65	4.02	14.26	10.86	6.55	5.64	3.32	9.64	3.15	4.52	2.01	2.82
Merged-chr3-59213830-2	chr3	59213746	59213946	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-2964.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	13.33	9.56	13.12	7.24	5.32	21.01	7.64	5.94	12.78	6.03	7.03	5.95
Merged-chr14-61803960-1	chr14	61803860	61804060	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-121587.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.85	2.77	11.41	7.24	9.0	2.2	1.66	5.94	2.56	7.53	8.54	3.13
Merged-chr6-127008429-1	chr6	127008329	127008529	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7113.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	8.08	10.06	2.28	9.65	3.68	2.2	5.31	1.6	5.9	7.53	2.01	1.25
Merged-chr10-28425611-1	chr10	28425511	28425711	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 7 of 30)	MTEa|LTR|ERVL-MaLR	-242749.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	5.65	1.76	4.56	7.24	4.09	5.33	7.64	21.67	1.97	1.0	6.53	6.27
Merged-chr2-157078545-3	chr2	157078470	157078670	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164663, exon 1 of 15)	exon (NM_001164663, exon 1 of 15)	695.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	10.9	12.58	2.85	6.03	11.86	7.21	11.96	5.05	10.82	17.07	8.04	5.95
Merged-chr12-102733560-3	chr12	102733470	102733670	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10091.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	9.29	8.05	2.28	3.22	9.82	8.47	1.66	7.99	11.41	9.04	17.08	5.01
Merged-chr2-24869732-1	chr2	24869632	24869832	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001012518, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	49877.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	4.85	3.52	7.42	7.64	4.5	9.09	2.33	6.36	1.77	1.51	5.02	1.88
Merged-chr10-8022165-1	chr10	8022065	8022265	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-66042.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.63	1.76	8.56	6.44	11.86	5.96	10.63	9.79	7.67	6.03	6.53	0.0
Merged-chr7-29297233-2	chr7	29297141	29297341	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6764.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	5.25	5.03	4.56	6.03	11.45	8.47	3.65	7.29	19.47	9.04	17.08	6.89
Merged-chr14-26642493-1	chr14	26642393	26642593	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	4359.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	8.88	10.31	6.85	5.63	3.68	4.7	4.65	3.93	2.95	3.51	6.53	4.07
Merged-chr7-34407721-3	chr7	34407654	34407854	+	757.994446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18049.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	10.5	9.31	6.28	21.32	13.5	13.48	5.31	11.19	18.88	8.54	12.56	8.77
Merged-chr2-150838113-2	chr2	150838017	150838217	+	757.974976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4453.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	10.09	3.77	15.97	4.83	18.41	8.47	10.96	16.82	7.47	13.05	9.55	10.02
Merged-chr5-31754804-3	chr5	31754696	31754896	+	757.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	ORR1E|LTR|ERVL-MaLR	56746.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	12.11	8.3	14.26	10.86	10.23	7.53	7.31	17.38	7.67	6.53	13.06	12.84
Merged-chr2-152671855-3	chr2	152671771	152671971	+	757.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	2410.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	21.8	8.3	6.28	13.27	7.36	8.47	8.64	7.91	14.95	15.06	10.55	9.08
Merged-chr17-67450636-3	chr17	67450530	67450730	+	757.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96139.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	9.69	8.3	13.69	9.25	13.09	6.59	8.3	11.8	11.01	9.04	13.06	11.28
Merged-chr7-88430312-3	chr7	88430222	88430422	+	757.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028238)	promoter-TSS (NM_028238)	49.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	7.27	9.81	5.7	12.47	17.59	8.78	13.29	12.73	10.42	5.52	5.53	10.34
Merged-chr7-141458566-3	chr7	141458453	141458653	+	757.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025802, intron 5 of 7)	intron (NM_025802, intron 5 of 7)	-2541.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	10.09	5.53	5.7	6.84	23.32	10.98	6.31	8.97	13.57	16.07	18.59	5.95
Merged-chr8-112034853-3	chr8	112034750	112034950	+	757.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23491.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	12.11	10.82	14.83	11.26	4.5	5.64	3.99	6.31	19.47	9.04	21.1	8.14
Merged-chr17-65802391-3	chr17	65802278	65802478	+	757.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	19023.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	3.23	5.28	11.41	5.23	1.23	9.41	4.65	8.27	11.6	5.02	6.53	1.57
Merged-chr11-98777439-2	chr11	98777347	98777547	+	757.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2070.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	12.92	3.52	6.28	3.22	4.09	10.03	14.62	3.39	10.03	12.55	9.55	10.34
Merged-chr2-24383906-3	chr2	24383813	24384013	+	757.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355231, intron 2 of 17)	intron (NM_001355231, intron 2 of 17)	-1419.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.86	6.54	9.7	4.83	7.36	5.33	8.97	6.39	9.05	5.52	13.06	5.64
Merged-chr19-38931451-3	chr19	38931361	38931561	+	757.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008234, exon 2 of 22)	exon (NM_008234, exon 2 of 22)	471.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	12.11	11.32	9.13	10.86	9.82	10.66	6.31	9.79	16.52	9.04	13.57	6.89
Merged-chr1-65155004-1	chr1	65154904	65155104	+	757.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24138.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	2.42	1.01	2.28	0.0	6.55	11.92	11.96	17.92	2.16	2.01	13.57	6.27
Merged-chr15-77772953-3	chr15	77772860	77773060	+	757.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 25 of 40)	G-rich|Low_complexity|Low_complexity	-15950.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	16.15	6.79	3.42	6.03	20.86	6.9	7.97	18.17	14.36	10.54	12.56	6.89
Merged-chr12-83861992-3	chr12	83861896	83862096	+	757.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	14816.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	6.06	8.05	19.97	2.82	4.5	13.48	8.3	9.62	12.0	5.52	5.02	15.04
Merged-chr9-113805503-3	chr9	113805400	113805600	+	757.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	L2a|LINE|L2	-7086.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	17.36	6.04	5.7	8.04	11.86	15.99	8.3	9.48	12.98	17.07	10.55	3.76
Merged-chr9-110622826-3	chr9	110622721	110622921	+	757.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026012, intron 2 of 4)	intron (NM_026012, intron 2 of 4)	1572.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	12.92	10.82	22.82	12.07	13.09	7.53	4.98	13.93	8.85	5.52	11.05	11.59
Merged-chr8-105263506-3	chr8	105263363	105263563	+	757.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	1131.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	7.67	5.03	10.27	6.44	7.36	5.96	5.98	6.59	8.46	5.02	10.55	7.21
Merged-chr19-33110017-3	chr19	33109914	33110114	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47098.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	12.52	7.04	10.84	5.23	8.59	15.05	8.64	18.2	10.62	2.01	9.04	10.96
Merged-chr5-134509176-3	chr5	134509074	134509274	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009990, intron 8 of 16)	MIR3|SINE|MIR	43260.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	9.69	6.54	13.12	16.49	10.23	9.09	8.97	15.9	9.24	9.54	13.06	5.64
Merged-chr8-45875454-3	chr8	45875347	45875547	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10038.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	6.86	10.06	5.7	28.15	29.86	19.44	22.26	29.1	6.29	10.54	11.56	10.34
Merged-chr19-16349504-3	chr19	16349418	16349618	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	L1MB3|LINE|L1	-34514.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	5.65	9.81	13.12	17.7	11.05	10.03	1.99	9.87	12.19	10.04	20.6	10.34
Merged-chr6-38951062-3	chr6	38950966	38951166	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	32080.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	8.88	5.28	9.7	8.85	3.68	24.15	10.63	13.23	12.78	12.05	8.04	3.76
Merged-chr6-145802193-1	chr6	145802093	145802293	+	757.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6190.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	6.46	6.04	1.71	3.62	6.55	4.08	9.3	6.53	4.72	7.03	5.02	4.7
Merged-chr7-139949974-2	chr7	139949866	139950066	+	757.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6110.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	2.42	3.27	6.85	5.23	4.91	8.47	6.64	6.84	13.18	10.04	8.04	8.77
Merged-chr9-111039830-1	chr9	111039730	111039930	+	757.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	17414.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.27	8.3	5.13	6.03	9.0	6.9	9.97	7.99	10.42	4.02	8.54	5.95
Merged-chr17-33903521-3	chr17	33903438	33903638	+	757.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-1597.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	10.09	8.8	2.28	2.01	7.36	11.29	7.31	5.92	19.87	17.07	10.55	15.66
Merged-chr4-56134582-3	chr4	56134478	56134678	+	757.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-602103.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.69	4.02	11.41	6.44	10.64	4.39	10.3	7.6	14.36	12.55	20.1	10.65
Merged-chrX-20368094-3	chrX	20368015	20368215	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290644, intron 2 of 5)	intron (NM_001290644, intron 2 of 5)	3634.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	12.11	9.06	5.7	11.26	9.0	15.68	12.95	15.87	10.23	8.54	16.58	4.07
Merged-chr10-83198573-3	chr10	83198458	83198658	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139259.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	10.5	6.79	13.12	12.07	15.14	5.33	6.64	7.82	15.74	10.54	10.55	7.83
Merged-chr11-45543537-1	chr11	45543437	45543637	+	757.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-264546.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	3.23	6.79	9.7	2.82	6.55	5.64	3.99	6.17	1.38	2.51	3.52	3.13
Merged-chr5-52743473-3	chr5	52743391	52743591	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1917.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	7.27	8.3	16.54	16.89	11.05	17.25	10.63	20.3	10.42	4.02	15.58	9.08
Merged-chr17-87281553-3	chr17	87281455	87281655	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015506, intron 1 of 4)	intron (NR_015506, intron 1 of 4)	1259.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	5.25	12.83	11.41	6.84	8.18	9.72	5.65	4.09	14.95	8.03	10.05	5.01
Merged-chr1-176847629-3	chr1	176847521	176847721	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-11488.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	6.86	5.53	17.11	10.46	7.36	11.6	4.98	14.41	16.72	25.11	22.11	11.9
Merged-chr19-12571104-1	chr19	12571004	12571204	+	757.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2406.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	2.42	1.76	2.28	0.8	0.0	0.0	0.0	0.59	19.08	10.54	16.58	6.58
Merged-chr15-36828201-3	chr15	36828097	36828297	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31268.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	9.29	4.78	9.13	10.05	13.91	19.44	10.63	9.98	12.78	13.56	13.06	3.76
Merged-chr4-12089967-3	chr4	12089874	12090074	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198957, intron 2 of 3)	CpG-9730	604.0	NM_198957	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	4.85	14.59	5.13	8.85	10.23	13.8	12.29	9.48	5.7	15.57	11.05	9.08
Merged-chr15-84324740-2	chr15	84324640	84324840	+	757.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022321)	promoter-TSS (NM_022321)	20.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	8.08	5.53	5.7	7.24	6.95	5.96	8.97	9.87	10.62	10.54	14.07	13.47
Merged-chr6-86524138-2	chr6	86524041	86524241	+	757.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011865)	TTS (NM_011865)	2048.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	4.04	4.78	3.42	2.41	5.32	8.78	11.29	10.77	7.28	10.04	4.02	5.01
Merged-chr15-98877471-2	chr15	98877356	98877556	+	757.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026967)	TTS (NM_026967)	3958.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	15.34	8.3	2.28	12.07	10.23	13.17	2.99	4.26	4.33	6.53	6.03	3.13
Merged-chr15-25985623-2	chr15	25985539	25985739	+	757.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144523, intron 1 of 5)	B1_Mus1|SINE|Alu	1273.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	5.25	8.3	4.56	6.03	8.18	7.21	4.65	5.07	12.39	12.05	17.08	9.71
Merged-chr4-88275664-3	chr4	88275567	88275767	+	757.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 16 of 43)	intron (NM_001081184, intron 16 of 43)	153627.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	7.67	7.55	15.4	12.87	11.45	4.39	5.65	12.45	11.41	9.04	28.14	17.86
Merged-chr16-10521372-3	chr16	10521264	10521464	+	757.605591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	21690.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	10.9	5.53	9.7	12.07	15.55	25.71	7.97	10.68	13.18	12.05	16.08	5.64
Merged-chr8-35408056-2	chr8	35407954	35408154	+	757.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32313.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	10.9	5.79	9.7	7.24	10.64	15.68	13.62	15.48	3.74	1.0	5.02	3.45
Merged-chr1-176834140-3	chr1	176834030	176834230	+	757.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037996)	TTS (NR_037996)	2003.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	8.48	6.54	1.71	3.22	12.68	6.9	4.65	10.32	9.83	5.52	4.52	13.16
Merged-chr12-69733716-3	chr12	69733624	69733824	+	757.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361691, intron 1 of 4)	intron (NM_001361691, intron 1 of 4)	8779.0	NM_001361690	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	15.34	10.31	9.13	13.67	11.45	8.47	3.99	7.09	12.0	10.54	15.58	10.02
Merged-chr11-97362863-4	chr11	97362793	97362993	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138657, exon 1 of 10)	exon (NM_138657, exon 1 of 10)	342.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	7.27	7.29	2.85	5.63	10.23	5.96	5.98	3.64	11.21	8.03	6.53	10.34
Merged-chr2-145829652-2	chr2	145829546	145829746	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	43530.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	1.21	2.01	4.56	3.22	5.73	20.38	7.64	9.9	6.29	0.5	12.06	10.34
Merged-chr9-116151506-1	chr9	116151406	116151606	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23857.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.46	6.29	1.71	5.63	5.32	7.84	9.3	7.26	0.39	1.51	3.52	0.31
Merged-chr13-101842138-2	chr13	101842020	101842220	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73903.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	1.62	5.03	7.42	2.41	10.64	8.47	7.97	2.58	10.82	1.0	13.06	3.45
Merged-chr1-85766250-2	chr1	85766124	85766324	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9047.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	2.83	9.31	8.56	3.22	8.59	8.78	10.3	8.02	2.95	3.51	3.52	2.51
Merged-chr7-115034174-1	chr7	115034074	115034274	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82900.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.02	4.28	3.42	6.44	6.55	5.33	5.98	6.0	7.28	8.03	8.54	1.25
Merged-chr3-87971421-1	chr3	87971321	87971521	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016701, exon 1 of 4)	exon (NM_016701, exon 1 of 4)	328.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	1.21	0.75	2.85	4.83	5.73	4.7	10.63	6.39	1.97	2.01	3.52	1.25
Merged-chr7-80201224-2	chr7	80201119	80201319	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	2778.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	11.71	4.53	13.69	1.61	8.59	2.2	6.31	9.06	2.95	7.53	4.02	2.82
Merged-chr10-37014473-1	chr10	37014373	37014573	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39929.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	8.08	5.28	2.28	2.41	2.86	6.27	6.98	7.21	8.85	1.0	19.09	2.82
Merged-chr5-72552836-1	chr5	72552736	72552936	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6809.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	7.67	3.02	1.14	9.65	5.73	4.7	6.98	7.74	3.74	6.03	4.02	2.19
Merged-chr4-70621505-3	chr4	70621407	70621607	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86579.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	9.29	11.82	7.99	2.01	11.05	5.96	7.31	15.11	11.8	13.05	8.04	9.08
Merged-chr5-135956548-3	chr5	135956458	135956658	+	757.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	17918.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	5.65	6.04	10.84	12.47	5.73	5.64	9.97	9.87	5.9	2.51	5.02	8.46
Merged-chr11-82954521-2	chr11	82954428	82954628	+	757.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183201, intron 1 of 5)	MER89|LTR|ERV1	2426.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	6.06	4.53	7.99	1.61	4.91	10.66	14.95	7.6	11.01	13.56	14.07	15.66
Merged-chr4-26353883-3	chr4	26353809	26354009	+	757.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	-7257.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	6.46	12.83	2.28	8.45	11.86	4.7	6.98	10.6	8.06	13.05	8.04	8.14
Merged-chr2-93507815-2	chr2	93507710	93507910	+	757.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-44860.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	2.83	6.29	7.99	5.63	11.05	11.6	15.28	6.11	12.98	15.06	19.6	6.27
Merged-chr1-152575181-3	chr1	152575083	152575283	+	757.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	50034.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	14.13	10.06	9.13	8.45	9.82	8.47	8.97	3.93	13.57	12.55	5.53	2.19
Merged-chr13-30972305-2	chr13	30972197	30972397	+	757.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025588, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	1750.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	2.42	9.56	7.42	9.25	8.59	9.41	6.31	7.74	12.0	8.54	6.53	7.21
Merged-chr11-117066858-2	chr11	117066753	117066953	+	757.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9930.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	7.67	9.06	11.41	5.23	6.95	10.98	5.98	6.39	7.87	4.52	4.02	5.64
Merged-chr15-58075651-2	chr15	58075551	58075751	+	757.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	857.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	4.44	2.52	3.42	6.03	9.0	7.21	4.98	5.75	12.39	9.54	10.05	10.34
Merged-chr10-108300989-2	chr10	108300891	108301091	+	757.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31198.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	2.42	11.07	7.99	2.41	7.77	12.23	1.99	14.47	4.92	19.58	16.58	11.28
Merged-chr19-12439308-3	chr19	12439210	12439410	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11405.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	8.88	7.29	13.69	4.02	9.0	3.14	11.29	12.93	11.41	7.53	11.05	8.77
Merged-chr14-78668487-3	chr14	78668388	78668588	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-24037.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.42	9.56	10.27	13.27	8.18	5.33	11.96	12.14	12.0	3.51	12.06	4.39
Merged-chr1-60410079-3	chr1	60409980	60410180	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198127, intron 1 of 8)	CpG	461.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	14.54	4.02	5.13	12.87	14.32	11.29	13.29	9.14	10.82	11.05	7.03	2.51
Merged-chr19-58983759-1	chr19	58983659	58983859	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175172, intron 14 of 14)	B4A|SINE|B4	-40087.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	11.71	14.84	21.68	10.46	7.36	3.76	3.32	1.37	10.62	4.02	4.52	2.82
Merged-chr7-118584687-1	chr7	118584587	118584787	+	757.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172476)	promoter-TSS (NM_172476)	-1.0	NM_172476	209760.0	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	4.04	3.77	5.13	7.64	9.41	4.7	5.65	2.89	7.08	2.01	10.05	8.77
Merged-chr11-54923168-1	chr11	54923068	54923268	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	20314.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	2.83	8.55	19.4	14.08	0.0	1.88	3.99	4.96	0.79	0.0	1.51	2.82
Merged-chr10-25292304-1	chr10	25292204	25292404	+	757.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6859.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.86	4.78	4.56	17.29	9.82	8.15	0.66	7.91	1.57	4.52	1.51	3.76
Merged-chr2-148073318-1	chr2	148073218	148073418	+	757.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26349.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.02	0.0	0.0	0.0	3.27	1.25	0.66	0.67	9.44	11.05	18.59	14.41
Merged-chr6-149315019-3	chr6	149314870	149315070	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	5556.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	1.62	8.3	4.56	1.61	0.82	5.33	1.0	6.59	5.9	4.52	7.54	3.76
Merged-chr8-123026055-3	chr8	123025929	123026129	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	16255.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	7.27	9.81	7.42	8.85	16.77	14.74	5.65	7.63	13.77	14.06	11.56	8.46
Merged-chr8-71702124-4	chr8	71702000	71702200	+	757.325012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-300.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	13.73	4.78	5.13	2.01	11.05	7.84	4.98	3.34	8.06	5.52	4.52	8.46
Merged-chr7-16619110-2	chr7	16618983	16619183	+	757.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136929, intron 1 of 2)	CpG	-4090.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	9.69	9.81	7.99	16.49	9.82	9.09	4.32	8.58	5.51	2.51	15.58	6.58
Merged-chr8-94077007-3	chr8	94076892	94077092	+	757.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026116, exon 13 of 17)	exon (NM_026116, exon 13 of 17)	21819.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	15.75	16.85	7.42	3.22	10.64	7.84	10.96	6.67	13.57	9.04	4.02	8.77
Merged-chr2-118762644-3	chr2	118762549	118762749	+	757.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	12.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	5.25	7.29	15.4	9.65	9.82	5.64	7.64	15.36	29.11	13.05	20.1	14.72
Merged-chr1-23247171-3	chr1	23246999	23247199	+	757.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25170.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	5.65	4.02	1.71	6.84	4.09	8.15	7.97	6.28	9.24	5.52	11.56	8.46
Merged-chrX-52990421-2	chrX	52990311	52990511	+	757.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013556, intron 1 of 8)	intron (NM_013556, intron 1 of 8)	2333.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	3.63	3.52	12.55	9.25	10.64	9.72	10.96	13.6	10.42	9.04	16.08	7.21
Merged-chrX-56462207-3	chrX	56462094	56462294	+	757.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	intron (NM_172779, intron 2 of 16)	7355.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	12.92	8.05	4.56	5.23	12.27	17.25	7.64	10.21	14.95	12.05	13.06	4.7
Merged-chr1-86500071-3	chr1	86499971	86500171	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26486.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.04	5.03	14.83	11.26	5.73	12.23	7.97	10.18	7.87	7.53	9.55	4.7
Merged-chr15-79941167-3	chr15	79941084	79941284	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8538.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	14.54	7.29	7.99	5.23	13.09	13.17	1.66	5.58	16.72	10.04	12.06	6.58
Merged-chr12-33027296-3	chr12	33027201	33027401	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65574.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	12.11	8.55	10.27	11.26	17.59	16.93	4.98	10.63	12.78	7.53	12.56	7.21
Merged-chr2-26507486-3	chr2	26507382	26507582	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3555.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	8.08	4.02	10.84	3.22	16.36	8.78	13.29	16.49	6.69	9.54	17.59	8.14
Merged-chr13-34277890-3	chr13	34277820	34278020	+	757.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	67262.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	7.67	15.09	11.41	8.04	19.23	10.66	8.3	9.28	15.74	9.54	4.02	3.76
Merged-chr7-104352858-3	chr7	104352719	104352919	+	757.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175677, intron 1 of 7)	URR1A|DNA|hAT-Charlie	530.0	NM_175677	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	10.09	2.01	9.13	6.44	5.73	4.7	9.63	11.75	13.37	8.03	7.54	4.39
Merged-chr7-80440976-1	chr7	80440876	80441076	+	757.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35540.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	14.13	4.02	7.99	6.84	8.59	9.41	7.64	9.06	5.31	6.03	9.55	2.82
Merged-chr11-69067084-1	chr11	69066984	69067184	+	757.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3725.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	4.04	5.79	3.99	6.84	6.95	16.62	2.33	2.8	16.52	10.04	14.57	13.47
Merged-chr7-45523086-3	chr7	45522954	45523154	+	757.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008807)	TTS (NM_008807)	3214.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	2.83	3.52	14.26	6.03	11.45	5.64	1.66	5.24	11.21	13.56	14.07	9.71
Merged-chr1-191850399-1	chr1	191850299	191850499	+	757.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28926.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	4.85	5.79	10.84	4.02	9.82	6.27	7.64	17.47	12.78	2.51	2.01	3.76
Merged-chr18-65582258-3	chr18	65582166	65582366	+	757.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-152.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	12.52	6.54	12.55	8.04	11.45	11.29	8.97	16.4	7.47	3.01	14.07	10.02
Merged-chr7-80582341-2	chr7	80582232	80582432	+	757.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-47213.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	2.02	1.26	6.28	2.41	0.82	2.51	1.99	2.78	26.36	13.56	28.64	24.75
Merged-chr7-125601174-2	chr7	125601044	125601244	+	757.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	7.27	11.57	5.7	11.26	5.73	7.53	6.64	7.26	11.6	3.51	4.52	4.39
Merged-chr18-52559086-2	chr18	52559002	52559202	+	757.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29235.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	6.46	4.28	2.28	4.42	5.73	11.29	4.65	7.32	12.19	19.58	20.1	8.14
Merged-chr6-134133918-3	chr6	134133814	134134014	+	757.116638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	98214.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	13.33	8.3	3.99	3.62	7.36	8.47	12.62	6.7	29.5	13.56	25.12	8.14
Merged-chr15-98634867-3	chr15	98634747	98634947	+	757.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286226)	promoter-TSS (NM_001286226)	80.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	12.92	7.8	6.85	9.25	1.64	5.96	5.65	4.99	9.83	8.03	5.02	5.64
Merged-chr7-110863116-3	chr7	110863007	110863207	+	757.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053247)	promoter-TSS (NM_053247)	-154.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	8.48	4.28	2.85	14.88	4.5	12.86	20.26	12.36	10.23	7.53	12.56	5.64
Merged-chr12-33128398-3	chr12	33128302	33128502	+	757.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19184.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	10.09	7.04	12.55	10.46	8.18	8.78	5.98	11.61	13.37	4.52	8.54	8.46
Merged-chr1-75245004-2	chr1	75244885	75245085	+	757.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159885, exon 9 of 9)	3' UTR (NM_001159885, exon 9 of 9)	8283.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	6.06	5.03	5.13	9.25	2.45	10.66	4.98	10.09	6.88	8.54	8.54	5.64
Merged-chr8-70763610-3	chr8	70763515	70763715	+	757.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023065, intron 6 of 7)	B4A|SINE|B4	-2694.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	8.88	6.29	5.7	8.85	11.86	12.23	12.62	8.44	10.62	10.54	11.56	5.01
Merged-chr6-83693982-3	chr6	83693881	83694081	+	757.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002871, intron 5 of 5)	intron (NR_002871, intron 5 of 5)	-16124.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	11.71	10.31	9.7	8.04	12.27	10.98	2.99	8.19	7.87	13.05	12.06	8.14
Merged-chr16-91739215-3	chr16	91739116	91739316	+	757.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	B4A|SINE|B4	9845.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	13.33	14.59	11.98	20.91	13.91	13.17	8.97	13.82	8.65	15.57	10.55	8.77
Merged-chr12-25148238-1	chr12	25148138	25148338	+	757.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19064.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.4	3.02	1.71	2.01	0.0	0.0	0.66	2.02	11.6	6.03	7.54	13.16
Merged-chr16-91466758-2	chr16	91466646	91466846	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077219, intron 1 of 1)	intron (NR_077219, intron 1 of 1)	1642.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	8.08	3.02	0.57	5.23	5.32	1.57	1.33	2.72	17.31	25.11	19.6	12.53
Merged-chr2-83739947-2	chr2	83739837	83740037	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	15540.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.85	10.06	1.71	10.05	3.68	6.27	9.3	8.44	5.7	13.56	6.03	1.25
Merged-chr2-59336735-1	chr2	59336635	59336835	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	49947.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.46	5.28	5.13	3.22	5.32	7.21	2.99	6.25	3.54	6.53	11.05	6.58
Merged-chr10-41868151-2	chr10	41868035	41868235	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-19304.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.04	3.27	0.57	5.63	1.64	5.64	5.98	8.55	12.78	6.03	11.56	8.46
Merged-chr9-87027764-1	chr9	87027664	87027864	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359962, intron 2 of 14)	intron (NM_001359962, intron 2 of 14)	5735.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	6.46	5.79	4.56	2.41	3.27	5.64	3.65	5.44	5.9	2.01	3.01	5.01
Merged-chr2-125280839-1	chr2	125280739	125280939	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33324.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.81	4.02	0.0	4.02	6.55	4.7	8.64	7.77	5.11	0.0	3.52	2.51
Merged-chr16-13440635-1	chr16	13440535	13440735	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8888.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	6.86	7.55	1.14	6.44	5.73	12.23	3.99	6.28	9.24	10.04	9.04	5.64
Merged-chr18-33807045-2	chr18	33806947	33807147	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013512, intron 19 of 23)	intron (NM_013512, intron 19 of 23)	12155.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	8.88	10.82	12.55	3.62	8.59	7.53	2.66	6.93	9.83	8.54	26.13	4.7
Merged-chr10-93272052-1	chr10	93271952	93272152	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39107.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	1.62	1.01	0.57	0.8	0.82	5.33	3.32	5.89	2.75	1.0	1.0	0.94
Merged-chr11-46848259-3	chr11	46848183	46848383	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37484.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	10.5	4.78	18.25	10.46	11.05	9.09	9.97	11.55	7.87	9.54	14.57	3.45
Merged-chr18-43453213-1	chr18	43453113	43453313	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-14927.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.81	0.5	1.71	0.0	2.05	4.7	7.31	5.94	4.92	9.54	5.53	3.45
Merged-chr7-45129593-1	chr7	45129493	45129693	+	757.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-848.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	4.04	3.77	7.42	1.21	2.86	3.14	10.63	5.69	11.41	2.51	7.54	8.77
Merged-chr5-148837190-1	chr5	148837090	148837290	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59227.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	1.62	3.02	4.56	4.02	2.45	4.7	8.97	8.72	6.88	2.01	11.56	6.27
Merged-chrX-142370580-2	chrX	142370467	142370667	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	19968.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	7.67	2.01	0.57	2.82	9.41	3.76	7.64	13.99	9.44	0.5	9.55	3.45
Merged-chrX-12260525-1	chrX	12260425	12260625	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94471.0	NR_045321	100043946.0	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	-	predicted gene 14635	ncRNA	0.81	5.53	1.14	3.22	0.0	8.78	7.31	7.91	7.47	5.52	8.04	5.95
Merged-chr1-20452614-1	chr1	20452514	20452714	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	96160.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	2.42	0.0	2.28	1.61	7.77	3.14	0.0	7.74	2.75	1.0	1.51	0.63
Merged-chr11-110472288-3	chr11	110472176	110472376	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-6239.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.48	9.81	7.99	4.83	12.68	21.01	6.98	5.72	42.09	31.13	42.71	15.98
Merged-chr9-7914658-1	chr9	7914558	7914758	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41488.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	5.25	4.53	0.57	2.41	4.91	6.9	7.64	8.38	4.92	5.02	2.01	4.7
Merged-chr1-149892471-1	chr1	149892371	149892571	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	29968.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	1.62	2.26	5.7	2.01	6.55	3.45	3.99	7.32	3.15	5.02	4.02	5.33
Merged-chr6-113644386-2	chr6	113644302	113644502	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	ORR1G|LTR|ERVL-MaLR	5935.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.25	6.54	5.13	1.21	11.05	10.03	2.66	3.17	9.44	13.05	8.04	10.02
Merged-chr6-146113272-1	chr6	146113172	146113372	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	179150.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.85	3.02	1.14	3.62	10.64	11.6	2.66	7.04	5.11	3.51	5.02	1.88
Merged-chr2-156441985-1	chr2	156441885	156442085	+	757.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	21076.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.0	0.75	0.0	0.8	0.0	0.0	0.0	0.0	4.52	0.5	5.53	2.51
Merged-chr2-158606635-1	chr2	158606535	158606735	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040358, intron 1 of 2)	intron (NR_040358, intron 1 of 2)	4088.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	3.23	2.01	1.14	5.23	7.36	5.64	1.33	6.39	7.67	7.53	7.54	6.58
Merged-chr11-60091211-1	chr11	60091111	60091311	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13802.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.81	1.01	0.0	2.01	0.82	1.57	7.97	5.78	0.2	1.0	4.02	2.82
Merged-chr4-149486043-1	chr4	149485943	149486143	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	777.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	4.85	4.02	2.28	3.62	11.45	2.2	3.32	5.07	4.72	5.02	8.04	5.33
Merged-chr2-103547354-1	chr2	103547254	103547454	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18956.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.25	6.54	5.13	4.02	3.68	5.64	3.32	6.39	5.51	7.53	10.05	8.14
Merged-chr1-174354839-3	chr1	174354712	174354912	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14107.0	NM_207137	258238.0	Mm.377274	NM_207137	ENSMUSG00000066672	Olfr417	GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11	olfactory receptor 417	protein-coding	6.46	7.55	13.69	5.23	6.95	5.96	4.65	7.99	13.77	6.53	10.55	11.28
Merged-chr2-168629024-1	chr2	168628924	168629124	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11735.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	3.23	2.01	2.85	5.23	4.09	9.09	1.66	5.92	4.13	3.01	5.53	3.13
Merged-chr7-101540017-1	chr7	101539917	101540117	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15785.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	17.36	6.04	2.85	5.63	9.82	10.35	5.65	11.07	1.38	1.51	2.51	1.57
Merged-chr7-104200021-2	chr7	104199927	104200127	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9822.0	NM_147055	259057.0	Mm.223438	NM_147055	ENSMUSG00000044899	Olfr649	MOR31-7	olfactory receptor 649	protein-coding	6.86	2.77	1.14	3.22	11.45	8.15	6.64	6.5	7.08	14.56	14.57	4.39
Merged-chr6-113655174-1	chr6	113655074	113655274	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	16707.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.81	0.5	2.28	0.0	8.59	3.45	4.98	6.64	5.9	3.01	4.02	2.19
Merged-chr5-92477186-3	chr5	92477087	92477287	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	IAPEz-int|LTR|ERVK	18630.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	4.44	12.58	7.99	11.26	43.77	50.49	20.26	24.56	16.13	10.04	12.06	4.7
Merged-chr2-118548615-2	chr2	118548605	118548805	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138313, intron 2 of 4)	intron (NM_138313, intron 2 of 4)	981.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.02	2.77	2.28	2.01	2.05	2.51	3.65	3.67	6.29	4.02	6.03	2.51
Merged-chrX-95026619-1	chrX	95026519	95026719	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178753)	promoter-TSS (NM_178753)	63.0	NM_178753	270624.0	Mm.115205	NM_178753	ENSMUSG00000071722	Spin4	9630042H07Rik	spindlin family, member 4	protein-coding	5.25	2.52	2.28	6.03	6.14	4.7	3.32	5.89	2.36	1.0	1.51	2.51
Merged-chr7-19764813-1	chr7	19764713	19764913	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020486, intron 6 of 14)	intron (NM_020486, intron 6 of 14)	5719.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	4.85	3.02	1.71	5.63	2.45	3.45	8.3	6.64	3.74	2.01	8.54	3.13
Merged-chr2-131087316-2	chr2	131087216	131087416	+	756.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-551.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	8.88	5.79	10.84	8.85	10.64	5.96	8.97	12.28	5.51	3.01	9.55	6.58
Merged-chr4-106908406-2	chr4	106908292	106908492	+	756.924988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-3078.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.83	1.26	7.42	4.83	10.23	3.76	12.62	6.31	9.24	4.52	6.53	4.07
Merged-chr2-126496482-3	chr2	126496380	126496580	+	756.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3367.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	8.48	12.58	14.26	7.24	9.82	12.86	7.64	13.23	12.0	0.0	8.54	11.28
Merged-chr4-46601338-3	chr4	46601186	46601386	+	756.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	CpG	643.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.63	5.28	8.56	7.64	7.36	6.27	10.63	11.41	8.26	5.02	8.54	8.46
Merged-chr7-107044589-3	chr7	107044501	107044701	+	756.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8465.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	10.5	1.76	6.85	23.33	11.86	7.21	7.64	15.22	6.29	14.56	19.6	5.95
Merged-chr6-125604232-4	chr6	125604182	125604382	+	756.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011708, exon 15 of 52)	exon (NM_011708, exon 15 of 52)	51334.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.83	1.26	0.0	0.8	3.27	0.63	1.33	4.79	2.56	7.03	5.02	4.07
Merged-chr19-42515563-3	chr19	42515462	42515662	+	756.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3243.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	11.71	6.79	9.13	12.87	20.05	14.42	6.98	16.65	10.82	2.01	12.06	15.35
Merged-chr17-27970498-2	chr17	27970385	27970585	+	756.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	61179.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	9.69	7.04	6.28	2.82	5.32	12.86	7.64	8.1	5.11	0.0	2.01	3.45
Merged-chr15-55390304-2	chr15	55390204	55390404	+	756.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	82554.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	3.63	5.03	10.84	14.08	12.27	21.01	17.27	24.59	9.05	7.03	11.05	6.58
Merged-chr11-20960289-1	chr11	20960189	20960389	+	756.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129181.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.02	1.26	9.13	0.4	8.59	7.21	7.31	9.08	4.72	11.05	9.04	3.13
Merged-chr5-123049423-3	chr5	123049326	123049526	+	756.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2410.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	11.71	14.59	10.27	6.03	9.41	11.6	4.98	9.17	9.44	6.53	15.07	6.27
Merged-chr16-76538130-2	chr16	76538048	76538248	+	756.825012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10647.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	9.29	6.54	9.13	10.05	19.64	15.99	5.65	14.24	2.16	3.01	4.52	1.88
Merged-chr1-58348874-3	chr1	58348748	58348948	+	756.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008419, intron 28 of 35)	intron (NM_001008419, intron 28 of 35)	-44288.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	5.65	8.55	6.28	3.62	7.77	2.82	0.0	7.91	19.08	15.06	6.53	10.02
Merged-chr3-152783932-3	chr3	152783819	152784019	+	756.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	69819.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	9.69	2.52	1.14	14.48	10.64	7.84	8.3	7.96	9.05	9.04	14.57	6.89
Merged-chr6-42391434-3	chr6	42391362	42391562	+	756.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-8776.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	14.13	8.3	13.12	13.67	6.55	9.41	3.99	11.41	18.49	9.04	9.55	6.58
Merged-chr7-4502806-3	chr7	4502641	4502841	+	756.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-1061.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	4.04	5.28	8.56	10.86	4.91	2.82	10.63	1.65	8.06	5.02	14.07	13.47
Merged-chr8-35565285-2	chr8	35565187	35565387	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-22511.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.85	10.56	10.84	8.85	6.14	5.96	11.96	21.64	8.46	7.03	13.57	7.21
Merged-chr1-171230344-2	chr1	171230244	171230444	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 3 of 4)	RMER20A|LTR|ERVK	4005.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	9.69	10.06	9.7	1.21	6.95	17.25	1.99	3.2	15.14	12.05	9.55	2.51
Merged-chr9-40350897-2	chr9	40350793	40350993	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-4648.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.46	10.06	4.56	12.47	20.05	5.33	7.64	9.2	5.9	12.55	6.03	8.14
Merged-chr9-123989857-2	chr9	123989768	123989968	+	756.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11460.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	6.06	4.02	4.56	2.41	4.09	5.96	6.64	10.96	10.82	8.03	5.53	2.19
Merged-chr8-113636388-2	chr8	113636307	113636507	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	608.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	11.71	8.8	10.27	9.65	1.64	2.2	1.33	3.42	9.05	3.51	14.57	5.95
Merged-chr12-8913255-2	chr12	8913149	8913349	+	756.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8058.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	5.65	12.07	7.42	5.63	9.82	5.33	3.65	13.63	5.51	10.04	13.06	13.47
Merged-chr4-150282225-2	chr4	150282110	150282310	+	756.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	294.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	13.33	5.79	4.56	4.83	2.45	7.53	6.31	7.32	9.05	5.52	5.02	7.52
Merged-chr5-147891946-3	chr5	147891827	147892027	+	756.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357002, intron 2 of 5)	(GGGTG)n|Simple_repeat|Simple_repeat	2888.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	6.86	12.07	8.56	15.28	5.32	12.54	4.65	6.62	13.18	17.07	12.06	8.46
Merged-chr8-84846011-2	chr8	84845913	84846113	+	756.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007591, exon 3 of 9)	exon (NM_007591, exon 3 of 9)	918.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	10.09	7.55	6.85	7.64	6.14	11.6	6.31	7.54	15.34	12.55	5.53	14.1
Merged-chr8-84277037-1	chr8	84276937	84277137	+	756.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-6635.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	2.42	3.52	2.28	6.44	3.27	7.84	7.97	7.15	0.98	6.53	4.02	3.45
Merged-chr17-24526586-1	chr17	24526486	24526686	+	756.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	1352.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	1.21	1.01	1.71	0.8	6.55	8.15	4.65	8.89	1.77	0.0	0.5	0.94
Merged-chr3-127077582-1	chr3	127077482	127077682	+	756.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001327939, exon 5 of 46)	exon (NM_001327939, exon 5 of 46)	-79130.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.5	0.0	0.8	1.64	0.0	0.0	0.0	15.54	16.07	15.58	7.83
Merged-chr4-154910796-3	chr4	154910690	154910890	+	756.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12|LTR|ERVK	-11747.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	14.13	12.32	9.7	8.04	9.0	12.23	3.99	6.62	7.47	4.52	19.6	5.95
Merged-chr10-96343432-3	chr10	96343335	96343535	+	756.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	117228.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.46	3.02	19.4	10.05	5.73	3.76	15.61	14.24	9.64	5.02	14.57	9.71
Merged-chr2-162930020-2	chr2	162929904	162930104	+	756.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1504.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	7.27	7.29	6.28	9.65	9.41	10.03	5.65	18.87	5.51	3.01	6.03	2.19
Merged-chr13-21172843-2	chr13	21172758	21172958	+	756.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	-7073.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.65	6.04	11.98	12.47	11.05	6.59	5.98	9.36	5.11	2.51	5.53	5.33
Merged-chr8-13157344-2	chr8	13157242	13157442	+	756.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1819.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.86	5.79	11.98	4.02	16.77	4.39	6.64	11.38	9.64	12.55	13.57	9.08
Merged-chr17-34392412-3	chr17	34392232	34392432	+	756.6444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6488.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	5.25	8.8	14.26	6.03	8.18	5.33	4.65	6.22	13.37	10.54	9.55	7.52
Merged-chr10-79755083-3	chr10	79754988	79755188	+	756.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023304)	promoter-TSS (NM_023304)	-31.0	NM_023304	67112.0	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	12.11	8.55	4.56	6.84	9.0	8.15	5.31	10.54	10.82	17.57	12.56	7.21
Merged-chr1-152533944-2	chr1	152533855	152534055	+	756.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	91262.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.46	3.02	6.85	5.23	10.23	10.98	4.98	7.63	9.24	3.01	2.51	10.34
Merged-chr5-117123293-2	chr5	117123205	117123405	+	756.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	3176.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.25	10.31	3.42	8.45	7.77	11.29	10.96	10.54	3.93	13.05	4.52	3.13
Merged-chr2-152808750-3	chr2	152808638	152808838	+	756.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	RLTR31D_MM|LTR|ERVK	19751.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.27	7.55	13.12	7.24	6.55	9.09	5.31	9.06	12.19	6.03	10.05	10.65
Merged-chr14-21101907-1	chr14	21101807	21102007	+	756.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134079, intron 2 of 10)	intron (NM_134079, intron 2 of 10)	25755.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.85	3.52	0.0	5.63	14.73	10.98	4.65	8.72	4.92	2.01	9.55	2.82
Merged-chr6-124756146-2	chr6	124756070	124756270	+	756.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007881, intron 1 of 9)	intron (NM_007881, intron 1 of 9)	317.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	5.65	7.29	5.13	4.42	9.41	5.64	9.97	6.81	11.21	10.54	12.06	8.46
Merged-chr15-66536632-2	chr15	66536529	66536729	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172514, intron 7 of 9)	L1MC3|LINE|L1	24417.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	9.69	7.29	3.99	3.62	11.45	12.54	12.95	11.66	7.28	4.02	10.55	5.95
Merged-chr4-3875131-2	chr4	3875014	3875214	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3009.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	2.42	6.54	3.42	2.01	6.55	5.33	12.62	6.59	10.03	5.02	9.04	9.4
Merged-chr18-17641110-2	chr18	17641002	17641202	+	756.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60112.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	4.44	5.03	11.41	9.25	11.45	11.29	18.6	24.25	5.9	1.51	14.07	2.51
Merged-chr17-79303431-2	chr17	79303327	79303527	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51664.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	6.86	4.28	1.71	1.61	6.95	5.64	5.65	10.18	17.11	15.06	14.57	14.1
Merged-chr2-154552657-2	chr2	154552555	154552755	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001171640, exon 1 of 1)	exon (NM_001171640, exon 1 of 1)	879.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	4.85	9.81	5.13	1.61	15.96	9.09	5.98	6.62	5.11	11.05	12.56	7.21
Merged-chr7-97129468-3	chr7	97129368	97129568	+	756.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	CT-rich|Low_complexity|Low_complexity	47717.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.06	6.29	5.7	7.24	11.05	5.33	4.65	8.05	10.23	13.56	7.03	10.96
Merged-chr14-49140892-3	chr14	49140814	49141014	+	756.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-31332.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	12.11	2.26	11.98	19.31	14.32	22.26	14.28	20.75	7.87	10.54	11.56	12.84
Merged-chr1-43912002-3	chr1	43911870	43912070	+	756.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22024.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	4.85	6.79	7.99	7.24	4.09	5.64	5.98	8.33	6.49	4.02	12.06	9.08
Merged-chrX-164091899-1	chrX	164091799	164091999	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001313719)	promoter-TSS (NM_001313719)	-290.0	NM_001313719	57394.0	Mm.143766	NM_020626	ENSMUSG00000015401	Tmem27	0610008J07Rik|NX-17|NX17	transmembrane protein 27	protein-coding	2.42	5.03	3.42	6.44	9.0	7.84	3.65	7.07	5.9	5.52	18.09	5.01
Merged-chr11-87422589-2	chr11	87422481	87422681	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-5010.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	8.88	7.04	8.56	5.63	7.77	7.53	4.32	7.09	13.77	12.55	8.54	6.27
Merged-chr6-81439484-2	chr6	81439384	81439584	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	456179.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	5.25	4.02	1.14	4.02	4.09	5.33	5.98	9.84	10.82	10.04	13.57	3.76
Merged-chr1-33503733-1	chr1	33503633	33503833	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008922, intron 10 of 13)	Tigger14a|DNA|TcMar-Tigger	166061.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	1.21	4.78	9.13	7.64	2.86	5.64	4.65	8.07	7.67	3.01	7.03	3.76
Merged-chr11-18958012-2	chr11	18957912	18958112	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	60957.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	6.86	6.79	6.28	1.61	6.14	8.47	5.31	11.38	10.62	5.02	10.55	5.64
Merged-chrX-140509868-2	chrX	140509779	140509979	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	32789.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	6.06	2.52	5.13	8.04	12.68	2.82	12.62	3.87	8.26	5.02	3.01	4.39
Merged-chr6-92127384-1	chr6	92127284	92127484	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34951.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	3.23	6.04	9.13	6.84	9.0	6.27	3.32	6.59	3.74	4.02	4.02	1.57
Merged-chr8-14893511-2	chr8	14893346	14893546	+	756.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4910.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.83	6.29	6.85	2.82	5.73	2.51	4.98	3.39	10.62	7.03	6.03	4.39
Merged-chr6-28485518-2	chr6	28485419	28485619	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	L2a|LINE|L2	5171.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	6.86	10.31	7.42	2.82	7.77	8.15	3.32	2.75	15.34	5.52	14.07	4.7
Merged-chr16-4568122-2	chr16	4568022	4568222	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8402.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	6.06	3.27	10.84	6.44	7.36	2.2	3.99	7.09	8.85	6.03	15.58	4.7
Merged-chr11-49986812-2	chr11	49986724	49986924	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38507.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	13.33	5.79	1.71	2.82	13.91	13.48	0.66	5.05	4.33	11.55	10.55	7.52
Merged-chr2-105716800-1	chr2	105716700	105716900	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023876, intron 9 of 9)	intron (NM_023876, intron 9 of 9)	34337.0	NM_001310145	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	2.02	10.56	5.13	4.83	8.18	17.25	8.97	3.42	11.41	2.01	3.01	0.0
Merged-chr5-92369260-2	chr5	92369157	92369357	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5961.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	6.46	3.27	10.27	2.82	7.36	8.47	3.32	6.9	13.18	11.05	7.03	5.33
Merged-chr15-36782177-3	chr15	36782100	36782300	+	756.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356569, intron 3 of 6)	PB1D11|SINE|Alu	8732.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	9.29	12.32	6.28	4.83	12.68	9.72	4.65	9.93	14.36	7.03	9.04	12.84
Merged-chr5-136248306-3	chr5	136248208	136248408	+	756.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291240, exon 23 of 23)	3' UTR (NM_001291240, exon 23 of 23)	-3368.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	8.08	9.56	15.97	8.85	9.82	13.48	5.31	12.48	9.24	13.56	22.61	20.05
Merged-chr4-108456151-2	chr4	108456039	108456239	+	756.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3287.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.65	4.78	5.13	5.23	3.68	8.78	4.32	13.82	16.72	10.54	8.54	6.27
Merged-chr11-95841464-2	chr11	95841354	95841554	+	756.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284393)	promoter-TSS (NM_001284393)	-841.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	1.62	4.53	0.0	0.8	5.32	9.72	8.97	4.79	7.47	8.03	10.05	8.14
Merged-chr15-89453499-2	chr15	89453407	89453607	+	756.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021921)	promoter-TSS (NM_021921)	-404.0	NM_021921	60597.0	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	6.06	2.52	1.14	5.63	7.36	5.64	8.64	10.49	17.31	8.03	10.55	8.14
Merged-chr5-3462233-2	chr5	3462129	3462329	+	756.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-81604.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.65	4.53	10.27	6.44	11.86	11.92	9.3	6.5	11.41	16.57	11.05	5.33
Merged-chr19-4135733-2	chr19	4135635	4135835	+	756.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144532, exon 6 of 6)	3' UTR (NM_144532, exon 6 of 6)	3874.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	7.67	9.56	8.56	2.41	2.45	9.09	3.32	1.6	12.0	18.58	15.07	4.07
Merged-chr15-83518306-2	chr15	83518213	83518413	+	756.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	161.0	NM_001357953	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	5.25	6.54	6.85	1.21	13.5	14.42	2.33	8.78	11.8	8.54	4.02	7.21
Merged-chr7-74944880-3	chr7	74944778	74944978	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	-85333.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	10.5	5.79	9.7	22.12	4.91	2.82	8.64	7.04	15.34	8.54	11.56	7.21
Merged-chr11-44356388-3	chr11	44356287	44356487	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-43676.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.06	6.04	8.56	14.88	9.41	0.94	6.98	7.43	14.16	9.04	9.55	9.71
Merged-chr5-142441410-1	chr5	142441310	142441510	+	756.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	RSINE1|SINE|B4	-22521.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	2.83	3.27	3.42	1.61	6.14	4.7	5.98	6.0	6.69	5.02	4.52	7.21
Merged-chr11-86655829-3	chr11	86655715	86655915	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	15460.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	6.86	9.31	16.54	6.44	10.64	13.8	3.65	14.83	8.85	7.53	9.55	10.96
Merged-chr15-67300669-3	chr15	67300585	67300785	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	L1M4|LINE|L1	73916.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	10.5	5.53	4.56	3.62	9.82	11.92	8.64	21.48	3.74	9.04	11.05	2.19
Merged-chr19-16139868-3	chr19	16139741	16139941	+	756.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7010.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.06	5.79	9.7	8.04	6.55	10.98	9.3	6.9	13.37	11.55	12.06	3.76
Merged-chr1-37542723-2	chr1	37542621	37542821	+	756.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1705.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	12.92	13.08	12.55	15.69	2.86	7.84	2.33	1.49	9.64	3.51	10.55	4.39
Merged-chr15-12206814-2	chr15	12206761	12206961	+	756.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1833.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	1.62	3.27	3.42	3.62	4.09	6.27	5.98	7.18	7.08	4.02	5.53	5.95
Merged-chr3-104460319-2	chr3	104460216	104460416	+	756.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025067, intron 17 of 17)	B4A|SINE|B4	51602.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	8.88	7.29	14.83	20.51	14.73	8.78	23.25	33.81	4.52	7.03	12.56	5.95
Merged-chr16-33186297-3	chr16	33186194	33186394	+	756.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	1223.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	8.08	8.8	7.99	13.27	11.05	9.09	9.63	14.38	11.41	5.02	10.05	10.96
Merged-chr9-107581193-3	chr9	107581089	107581289	+	756.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178020)	promoter-TSS (NM_178020)	-107.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	6.06	10.82	4.56	9.25	19.23	8.47	7.97	5.8	17.7	14.06	13.57	7.21
Merged-chr7-97843361-3	chr7	97843265	97843465	+	756.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357363, intron 1 of 14)	intron (NM_001357363, intron 1 of 14)	426.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	3.63	4.53	8.56	12.87	12.68	15.99	2.33	6.87	12.78	8.54	19.09	18.17
Merged-chr19-5747211-1	chr19	5747111	5747311	+	756.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008520, intron 7 of 27)	intron (NM_008520, intron 7 of 27)	6307.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	1.21	6.54	0.0	5.63	5.32	6.59	7.31	5.97	7.87	13.56	4.02	6.58
Merged-chr2-155082598-3	chr2	155082516	155082716	+	756.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8119.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	13.33	6.79	5.13	4.83	6.14	6.59	4.65	8.92	11.41	5.02	14.07	13.47
Merged-chr15-5188170-3	chr15	5188071	5188271	+	756.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355621, intron 2 of 5)	intron (NM_001355621, intron 2 of 5)	2611.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	11.71	6.79	10.27	16.09	18.0	10.98	11.63	16.71	8.65	5.52	13.06	9.08
Merged-chr15-68359670-2	chr15	68359552	68359752	+	756.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18363.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	5.65	5.28	2.28	1.61	2.45	5.64	5.65	7.74	10.82	5.02	12.06	7.83
Merged-chr13-56173212-3	chr13	56173133	56173333	+	756.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168615)	TTS (NM_001168615)	5652.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	15.75	7.29	11.41	16.49	9.41	7.53	10.63	17.36	10.23	5.02	9.04	7.52
Merged-chr1-119495125-3	chr1	119495010	119495210	+	756.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	9672.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	8.88	9.06	23.96	8.04	13.91	14.11	7.97	8.33	7.87	13.56	4.52	8.14
Merged-chr4-66894826-2	chr4	66894765	66894965	+	756.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67314.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.63	4.28	6.85	3.22	9.82	12.86	12.29	16.46	3.54	1.0	1.0	0.94
Merged-chr16-25009431-2	chr16	25009318	25009518	+	756.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-50221.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	10.9	7.04	8.56	4.42	4.5	6.59	6.98	11.36	15.74	5.52	10.55	7.21
Merged-chr13-51756741-2	chr13	51756620	51756820	+	756.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	37027.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.63	6.04	12.55	12.07	4.09	6.59	17.94	12.64	6.1	1.51	5.02	6.27
Merged-chr14-55114965-3	chr14	55114906	55115106	+	756.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177049, exon 2 of 6)	exon (NM_177049, exon 2 of 6)	1929.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	14.13	6.29	4.56	10.86	10.64	8.15	5.98	9.39	3.74	3.51	6.03	6.27
Merged-chr16-35874621-3	chr16	35874512	35874712	+	756.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR84b|LTR|ERVL	-3230.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	12.92	10.06	10.27	18.9	12.27	15.99	7.97	14.94	24.0	15.06	16.08	13.78
Merged-chr10-99128062-3	chr10	99127939	99128139	+	756.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	19904.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	12.92	7.8	4.56	11.66	9.82	9.09	6.98	20.89	5.9	3.01	8.54	7.83
Merged-chr5-8672081-3	chr5	8672004	8672204	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011076, intron 5 of 29)	intron (NM_011076, intron 5 of 29)	-49152.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	11.71	9.31	10.27	13.27	15.14	10.03	7.31	18.9	15.34	9.04	9.04	7.83
Merged-chr11-90245053-3	chr11	90244929	90245129	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4447.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.65	5.03	9.7	17.7	17.18	16.62	12.29	18.56	10.82	14.06	14.07	7.21
Merged-chr5-149068343-3	chr5	149068204	149068404	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15247.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	8.08	7.29	6.85	7.24	6.55	4.39	5.65	8.16	7.87	5.02	5.53	1.25
Merged-chr13-65176379-3	chr13	65176292	65176492	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175290)	TTS (NM_175290)	24166.0	NM_146819	258816.0	Mm.377705	NM_146819	ENSMUSG00000049806	Olfr466	MOR209-1	olfactory receptor 466	protein-coding	6.46	6.54	11.41	11.26	4.09	10.66	3.32	8.38	10.42	14.56	15.58	12.84
Merged-chr6-122801585-7	chr6	122801492	122801692	+	756.035706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18592.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	11.31	9.31	9.7	12.47	5.32	10.98	5.65	7.82	6.88	8.03	9.04	7.21
Merged-chr9-50479890-1	chr9	50479790	50479990	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14635.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	6.86	9.06	1.14	4.42	9.82	11.6	1.33	1.68	6.88	8.03	11.05	3.13
Merged-chr13-52981690-1	chr13	52981590	52981790	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-651.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	6.86	6.79	2.28	4.42	7.36	12.54	8.64	2.24	9.83	8.03	7.03	9.4
Merged-chr10-127570565-1	chr10	127570465	127570665	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36006.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.21	6.29	2.28	1.21	2.05	2.2	2.66	3.28	1.97	4.52	17.08	6.27
Merged-chr7-122209273-3	chr7	122209154	122209354	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10242.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	4.85	6.04	5.13	8.04	15.96	15.68	10.3	15.84	6.88	10.54	7.03	15.66
Merged-chr4-136260596-1	chr4	136260496	136260696	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011542, intron 5 of 10)	intron (NM_011542, intron 5 of 10)	12639.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	4.04	3.27	3.42	1.61	0.82	2.2	1.66	0.48	12.78	7.03	3.01	9.08
Merged-chr11-80523078-2	chr11	80522991	80523191	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-13985.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	4.44	6.04	7.99	4.02	10.23	10.03	2.99	12.42	10.82	7.53	10.55	6.58
Merged-chr2-156539378-1	chr2	156539278	156539478	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001006664, intron 21 of 21)	intron (NM_001006664, intron 21 of 21)	-8198.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.83	4.28	6.85	4.42	0.82	0.63	0.0	0.0	11.21	6.53	11.56	5.64
Merged-chr5-105506635-2	chr5	105506550	105506750	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-12821.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.25	5.79	19.4	5.63	5.73	7.53	12.62	16.74	0.79	0.0	1.0	0.63
Merged-chr13-42248871-3	chr13	42248763	42248963	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52613.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.23	6.54	13.69	5.63	8.59	8.78	4.65	4.49	15.93	4.52	4.02	8.46
Merged-chr2-160144180-1	chr2	160144080	160144280	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	127527.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	2.02	2.52	3.42	4.83	2.86	3.14	7.64	6.64	4.13	1.51	2.51	1.25
Merged-chr11-106414370-1	chr11	106414270	106414470	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023913, exon 11 of 22)	exon (NM_023913, exon 11 of 22)	-31589.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.25	3.27	9.13	3.22	6.55	3.14	5.65	5.64	8.85	10.04	8.04	8.46
Merged-chr16-32703541-3	chr16	32703466	32703666	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30412.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	6.06	4.78	12.55	14.08	13.91	5.33	8.97	11.86	7.47	5.02	4.02	6.58
Merged-chr9-68884620-1	chr9	68884520	68884720	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	119274.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	4.04	9.06	3.99	8.45	11.45	4.7	3.65	5.83	4.13	10.04	5.02	7.21
Merged-chr11-78188488-3	chr11	78188472	78188672	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033475)	promoter-TSS (NM_033475)	145.0	NM_001159482	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	4.04	5.53	3.99	5.23	9.82	7.84	8.64	2.61	5.31	8.03	6.03	6.89
Merged-chr12-100421298-1	chr12	100421198	100421398	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	99524.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.81	1.51	1.14	4.83	4.5	2.82	7.64	6.28	1.77	2.01	0.5	0.31
Merged-chr14-73215778-1	chr14	73215678	73215878	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 18 of 26)	intron (NM_009029, intron 18 of 26)	-8927.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	2.28	7.24	3.68	1.25	5.98	6.06	2.56	2.01	0.0	0.94
Merged-chr13-99375829-1	chr13	99375729	99375929	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173757, intron 4 of 10)	intron (NM_173757, intron 4 of 10)	31043.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	7.67	6.04	10.84	8.04	4.91	5.33	7.97	6.84	2.56	0.5	6.03	6.89
Merged-chr12-87237072-1	chr12	87236972	87237172	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	1529.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	5.65	8.3	11.41	11.26	4.5	4.08	0.33	7.74	6.69	6.03	4.02	3.76
Merged-chr8-14886030-1	chr8	14885930	14886130	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2506.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.46	2.52	3.42	0.0	2.45	8.47	3.99	6.95	6.88	8.54	11.05	4.7
Merged-chr4-88343518-1	chr4	88343418	88343618	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081184, intron 26 of 43)	intron (NM_001081184, intron 26 of 43)	95408.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.81	1.51	1.14	4.83	2.45	3.14	10.3	7.29	2.36	8.03	6.03	3.13
Merged-chr7-64060215-1	chr7	64060115	64060315	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93620.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	6.06	6.04	7.99	11.66	4.5	10.03	1.33	5.64	7.67	11.55	6.03	1.88
Merged-chr15-25284525-3	chr15	25284430	25284630	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	129234.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.46	8.55	20.54	4.83	10.23	7.53	7.97	30.84	21.64	11.55	37.18	6.58
Merged-chr13-24687541-1	chr13	24687441	24687641	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	48893.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	6.06	8.3	9.13	3.62	8.18	5.96	3.32	7.37	7.67	5.52	7.54	5.64
Merged-chr19-16343582-1	chr19	16343482	16343682	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-28578.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	1.62	7.55	10.27	6.44	0.82	1.88	5.65	6.17	5.9	6.03	7.54	6.27
Merged-chr10-22345946-1	chr10	22345846	22346046	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-15948.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.23	5.79	7.42	2.82	3.68	3.76	11.29	6.17	3.15	2.51	2.01	2.51
Merged-chr13-58073439-2	chr13	58073341	58073541	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 5 of 16)	intron (NM_001195075, intron 5 of 16)	28987.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	6.46	6.04	7.42	10.05	12.27	13.48	7.64	14.64	8.65	7.03	11.56	4.7
Merged-chr13-34993621-1	chr13	34993521	34993721	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110331, intron 1 of 9)	intron (NM_001110331, intron 1 of 9)	523.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	6.86	2.26	2.85	5.63	9.41	6.27	4.32	3.81	5.9	9.04	5.53	12.53
Merged-chr19-29383001-3	chr19	29382903	29383103	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15565.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	10.9	9.31	14.26	8.85	6.14	14.11	6.64	5.13	16.92	6.53	11.05	9.71
Merged-chr15-67355487-1	chr15	67355387	67355587	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 7 of 8)	MIR|SINE|MIR	128718.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.42	1.51	0.57	4.02	6.55	5.33	5.98	9.31	0.98	4.52	5.02	2.51
Merged-chr9-32508366-2	chr9	32508247	32508447	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33105.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.44	2.77	11.41	11.26	6.55	5.02	6.64	7.21	2.36	6.53	5.02	4.7
Merged-chr8-117248536-1	chr8	117248436	117248636	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8483.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.02	3.02	3.42	2.41	3.68	5.02	8.3	6.93	4.13	4.52	7.03	5.33
Merged-chr1-74367738-1	chr1	74367638	74367838	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033345, intron 7 of 9)	intron (NM_001033345, intron 7 of 9)	5630.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	4.04	2.52	3.99	0.0	6.14	4.08	1.99	6.5	8.85	4.02	4.02	3.76
Merged-chr14-54610117-1	chr14	54610017	54610217	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4209.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	4.44	4.02	1.14	3.22	5.32	7.21	2.33	2.33	18.49	9.04	3.52	3.76
Merged-chr1-93083800-2	chr1	93083698	93083898	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	-1318.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	6.06	9.31	10.27	2.41	10.64	8.47	10.96	16.82	5.9	5.52	8.54	4.7
Merged-chr6-99130258-1	chr6	99130158	99130358	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-101960.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.81	2.52	3.42	4.02	1.23	9.41	5.98	6.62	2.56	3.51	1.0	2.19
Merged-chr3-30917353-1	chr3	30917253	30917453	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165954, intron 11 of 14)	intron (NM_001165954, intron 11 of 14)	52062.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	4.04	4.28	1.71	4.02	4.09	7.53	5.31	10.82	6.1	3.01	17.59	6.58
Merged-chr18-35959224-1	chr18	35959124	35959324	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5606.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	3.23	1.51	2.28	0.8	2.45	0.63	6.31	1.79	2.75	6.03	1.0	2.19
Merged-chr3-144699230-2	chr3	144699149	144699349	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21086.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.23	4.53	2.28	4.02	8.18	6.59	10.96	5.92	12.0	11.05	7.03	4.07
Merged-chr10-39456510-1	chr10	39456410	39456610	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86711.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	8.88	3.02	5.7	9.25	7.36	2.82	5.31	9.45	6.49	0.5	9.55	2.19
Merged-chr5-135013272-2	chr5	135013141	135013341	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_026688)	promoter-TSS (NR_026688)	-84.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	7.67	6.04	5.13	7.64	12.27	6.27	4.98	9.22	7.67	16.07	7.54	4.7
Merged-chr10-7937800-1	chr10	7937700	7937900	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	15265.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	5.65	3.27	10.27	2.41	9.41	4.08	9.3	8.89	6.49	3.51	6.53	0.94
Merged-chr4-95248258-1	chr4	95248158	95248358	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-196036.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.25	1.51	0.0	3.22	5.73	4.7	9.3	5.55	4.13	2.01	5.02	1.88
Merged-chr4-134702123-2	chr4	134702010	134702210	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	2180.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.44	1.51	7.42	1.61	9.82	8.78	4.65	6.06	8.26	5.52	13.57	3.13
Merged-chr6-113418841-1	chr6	113418741	113418941	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001346511, exon 2 of 9)	exon (NM_001346511, exon 2 of 9)	499.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	3.23	8.05	3.99	4.83	9.82	10.35	8.97	5.61	4.33	2.01	5.53	5.95
Merged-chr12-72665238-2	chr12	72665128	72665328	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	-400.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	6.06	8.8	5.13	10.86	8.18	5.02	3.99	12.0	13.77	14.56	11.56	8.77
Merged-chr2-173740122-1	chr2	173740022	173740222	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2551.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.02	5.53	2.28	2.01	8.59	4.39	4.65	6.28	5.9	5.52	5.02	3.76
Merged-chr12-102369565-4	chr12	102369477	102369677	+	755.979187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70236.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.46	5.28	5.7	7.24	7.77	5.64	15.28	7.93	4.13	8.03	4.52	7.21
Merged-chr6-4967393-3	chr6	4967301	4967501	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	64081.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	8.48	8.05	10.27	3.62	10.23	8.78	8.64	13.35	9.64	8.54	16.58	5.33
Merged-chr15-62043382-3	chr15	62043284	62043484	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4127.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	8.88	10.56	3.42	11.26	10.64	12.23	4.98	5.36	13.57	15.57	28.14	12.84
Merged-chrX-48138769-3	chrX	48138679	48138879	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7657.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	4.44	13.58	10.27	8.04	13.5	11.29	6.98	8.36	14.36	11.55	15.58	5.33
Merged-chr11-118494278-3	chr11	118494152	118494352	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17420.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	8.08	7.55	6.85	7.24	12.27	7.21	14.95	7.68	11.01	9.04	5.53	10.02
Merged-chr2-12108566-3	chr2	12108489	12108689	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_138462, exon 31 of 31)	non-coding (NR_138462, exon 31 of 31)	-192657.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	9.29	5.03	10.27	10.86	15.96	14.74	17.94	16.71	9.24	9.54	20.6	6.89
Merged-chr10-71383704-2	chr10	71383601	71383801	+	755.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347191, exon 6 of 6)	3' UTR (NM_001347191, exon 6 of 6)	35938.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	10.5	3.77	7.99	9.65	8.59	6.27	15.94	14.41	4.13	2.01	2.51	2.82
Merged-chr12-37279045-3	chr12	37278947	37279147	+	755.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	37408.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	9.69	6.04	7.99	6.44	16.36	4.7	13.95	20.92	17.7	12.55	16.58	6.27
Merged-chr10-60374352-1	chr10	60374252	60374452	+	755.875	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25374.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.63	0.75	6.85	1.21	9.41	5.64	3.99	2.97	5.31	8.03	3.01	3.45
Merged-chr10-8505036-3	chr10	8505018	8505218	+	755.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13707.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	8.08	4.53	6.28	6.03	7.36	3.45	4.32	9.25	3.54	3.01	7.54	3.13
Merged-chr4-139602827-3	chr4	139602721	139602921	+	755.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20073.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	15.75	9.31	10.84	5.63	7.36	9.09	3.99	5.52	12.98	16.07	11.05	12.84
Merged-chr1-52765985-2	chr1	52765876	52766076	+	755.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38618.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	3.23	3.77	1.14	3.22	15.55	12.86	12.29	6.56	12.98	11.55	8.54	5.95
Merged-chr1-131339882-2	chr1	131339792	131339992	+	755.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 10 of 22)	intron (NM_001081011, intron 10 of 22)	-60329.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	9.69	3.52	6.85	8.04	11.45	14.11	11.96	13.04	6.88	3.51	8.04	9.08
Merged-chr18-60753004-2	chr18	60752916	60753116	+	755.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER94B|DNA|hAT-Blackjack	-4351.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.25	3.02	0.0	0.4	14.32	8.47	8.3	9.17	7.08	6.53	14.07	8.77
Merged-chr10-40256863-3	chr10	40256656	40256856	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359493, intron 2 of 5)	intron (NM_001359493, intron 2 of 5)	806.0	NM_001359493	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	2.83	5.03	3.42	8.04	4.5	4.08	3.99	3.64	4.52	3.01	5.53	5.95
Merged-chr2-168010099-3	chr2	168010007	168010207	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080708, intron 1 of 21)	intron (NM_001080708, intron 1 of 21)	486.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	8.48	6.04	3.42	4.83	11.86	19.13	3.32	11.36	9.24	8.54	13.57	5.95
Merged-chr11-70236815-3	chr11	70236767	70236967	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177606, intron 2 of 3)	intron (NM_001177606, intron 2 of 3)	1047.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	8.48	13.08	7.42	5.63	5.32	7.84	8.3	7.96	9.24	9.04	7.03	3.45
Merged-chr19-11404656-3	chr19	11404560	11404760	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3001.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	10.5	7.29	9.13	11.26	10.23	7.21	3.99	8.27	10.62	4.52	7.03	5.95
Merged-chr10-88621518-3	chr10	88621434	88621634	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16382.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	3.63	8.3	6.85	13.67	2.05	12.54	2.33	8.38	12.98	5.02	10.05	13.78
Merged-chr18-4918525-3	chr18	4918419	4918619	+	755.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	106033.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	8.88	7.55	12.55	14.88	13.09	4.7	9.63	19.82	8.26	12.05	20.1	3.45
Merged-chrX-130188611-3	chrX	130188506	130188706	+	755.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 23 of 26)	intron (NM_172493, intron 23 of 26)	438864.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	3.23	7.04	14.26	13.67	6.95	7.21	7.64	10.93	9.44	11.55	18.09	11.9
Merged-chr14-64858588-3	chr14	64858548	64858748	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 5 of 9)	intron (NM_177338, intron 5 of 9)	91209.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	12.11	7.8	15.4	6.03	3.68	3.45	8.64	9.81	3.15	12.55	9.55	5.64
Merged-chr10-81597361-2	chr10	81597260	81597460	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359135)	promoter-TSS (NM_001359135)	7.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	1.21	4.53	6.28	8.04	6.95	5.96	5.31	6.95	5.9	6.53	6.03	8.46
Merged-chr5-86920961-2	chr5	86920866	86921066	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152811, intron 3 of 5)	intron (NM_152811, intron 3 of 5)	5537.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	2.42	1.51	2.28	5.23	11.05	6.59	15.94	20.92	9.24	12.55	17.08	7.52
Merged-chr5-110840677-2	chr5	110840583	110840783	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	666.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	6.06	2.52	2.28	4.42	10.64	3.76	3.65	6.06	11.21	11.05	4.52	4.07
Merged-chr14-49063069-3	chr14	49062971	49063171	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-3478.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	6.46	8.8	12.55	8.04	19.64	16.31	4.98	9.53	12.0	4.52	9.04	7.83
Merged-chr10-117709080-3	chr10	117708988	117709188	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1670.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	10.5	5.03	6.28	4.83	6.55	6.27	8.3	10.77	7.87	12.55	11.05	10.65
Merged-chr2-155620016-1	chr2	155619916	155620116	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085378, intron 11 of 41)	intron (NM_001085378, intron 11 of 41)	-2864.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	9.69	3.02	7.42	2.41	13.09	11.6	5.98	8.38	19.08	6.03	5.53	6.89
Merged-chr3-9608547-2	chr3	9608445	9608645	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	1540.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.65	6.04	2.28	7.64	10.64	7.84	5.98	8.1	16.72	11.05	14.07	8.46
Merged-chr14-64657804-2	chr14	64657704	64657904	+	755.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	5273.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.02	13.08	26.81	14.08	7.77	9.72	8.64	10.68	7.28	14.56	11.56	4.07
Merged-chr17-13850379-3	chr17	13850277	13850477	+	755.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 17 of 33)	B3A|SINE|B2	-88983.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	13.33	8.3	6.85	5.23	9.41	12.86	10.3	13.49	7.28	11.05	8.54	3.45
Merged-chr12-33315998-3	chr12	33315886	33316086	+	755.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	13471.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	13.73	9.06	18.25	9.25	9.0	16.31	5.65	15.34	15.93	10.54	24.62	7.83
Merged-chr6-24955872-4	chr6	24955638	24955838	+	755.674988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	387.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	2.83	5.28	8.56	0.8	4.09	8.78	9.97	8.3	3.74	4.02	6.03	3.13
Merged-chr1-54565592-1	chr1	54565492	54565692	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7908.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.81	0.0	1.14	1.21	6.14	6.27	10.96	8.61	1.57	5.02	3.01	0.63
Merged-chr11-79202678-1	chr11	79202578	79202778	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40346.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.04	6.04	0.0	2.41	7.77	16.31	11.63	3.17	6.29	10.04	7.03	4.7
Merged-chr4-34733626-2	chr4	34733525	34733725	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3419.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	4.85	4.02	1.14	6.03	4.5	8.15	7.64	10.15	9.44	6.03	17.59	6.27
Merged-chr15-89400883-1	chr15	89400783	89400983	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162880, intron 1 of 2)	MTE-int|LTR|ERVL-MaLR	9380.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	7.27	3.77	9.7	6.44	8.18	5.64	7.97	11.36	7.67	9.54	17.59	6.58
Merged-chr14-51165545-3	chr14	51165483	51165683	+	755.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3323.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	2.83	7.8	3.99	0.8	4.5	4.08	2.99	5.5	11.41	6.03	9.55	4.7
Merged-chr16-95839267-1	chr16	95839167	95839367	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	59446.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.46	2.77	3.99	1.61	3.27	7.53	7.64	6.42	4.13	11.55	11.05	7.83
Merged-chr11-19968028-3	chr11	19967931	19968131	+	755.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	43589.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	14.54	22.64	4.56	7.64	13.5	25.09	7.97	4.88	22.03	7.53	20.1	7.83
Merged-chr3-138530202-1	chr3	138530102	138530302	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2934.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	9.29	3.02	0.0	2.41	6.14	6.27	4.65	6.64	5.9	4.02	10.05	6.27
Merged-chr2-145517570-3	chr2	145517450	145517650	+	755.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 4 of 16)	intron (NM_053195, intron 4 of 16)	37432.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	4.85	6.54	5.7	10.05	6.95	3.14	6.64	10.07	11.21	5.52	10.05	10.34
Merged-chr13-97235201-2	chr13	97235109	97235309	+	755.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5896.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	8.08	7.29	12.55	9.25	6.14	8.15	8.97	8.07	12.78	3.51	9.55	3.45
Merged-chr13-112366905-2	chr13	112366806	112367006	+	755.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	78388.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.06	3.27	4.56	2.41	14.73	14.11	8.64	11.92	8.85	10.54	5.02	3.45
Merged-chr4-132476404-2	chr4	132476307	132476507	+	755.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12486.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	2.42	4.78	4.56	0.8	20.86	14.11	8.3	15.03	6.49	21.09	12.06	7.52
Merged-chr15-100747169-2	chr15	100747071	100747271	+	755.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-14434.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	8.88	6.54	4.56	9.65	9.82	12.86	15.61	18.0	2.36	6.53	2.01	6.27
Merged-chr5-31093532-3	chr5	31093448	31093648	+	755.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011773)	promoter-TSS (NM_011773)	-21.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	13.73	8.05	11.41	6.03	8.59	5.33	9.3	6.08	12.59	12.05	14.57	4.7
Merged-chr1-56972386-3	chr1	56972289	56972489	+	755.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	920.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	12.52	7.55	2.28	7.24	7.36	9.72	11.96	9.25	15.14	20.59	12.06	6.58
Merged-chr9-96517621-3	chr9	96517512	96517712	+	755.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38937.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	5.65	6.04	7.42	15.28	18.41	9.41	12.62	24.62	9.83	11.05	25.12	12.22
Merged-chr6-125548630-3	chr6	125548542	125548742	+	755.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4306.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	5.65	10.06	7.99	8.85	7.77	8.78	10.3	19.01	12.0	11.55	15.58	7.83
Merged-chr3-51720388-2	chr3	51720273	51720473	+	755.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	RMER19A|LTR|ERVK	59194.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.04	7.55	7.42	16.89	5.32	12.23	15.28	11.72	7.67	3.51	7.54	9.71
Merged-chr13-59821100-3	chr13	59821011	59821211	+	755.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	2036.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	10.9	7.29	9.13	13.27	21.27	5.02	5.65	11.07	11.41	8.03	17.08	9.4
Merged-chr16-57259954-3	chr16	57259870	57260070	+	755.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28504.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	10.5	7.29	6.28	11.66	9.82	7.84	10.63	12.84	11.01	7.53	8.04	6.58
Merged-chr9-107288904-3	chr9	107288794	107288994	+	755.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	502.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	7.67	6.54	2.85	2.41	6.55	7.84	3.65	6.36	20.26	16.57	21.61	14.41
Merged-chr3-144706608-1	chr3	144706508	144706708	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001282042, exon 4 of 10)	exon (NM_001282042, exon 4 of 10)	13727.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	1.62	6.29	4.56	3.22	5.73	10.35	15.61	7.65	6.88	8.03	6.03	5.64
Merged-chr12-25492966-2	chr12	25492837	25493037	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	363763.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.81	2.52	6.28	4.83	1.64	4.08	4.32	8.92	8.65	3.01	9.04	4.7
Merged-chr8-128235762-2	chr8	128235644	128235844	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42481.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	7.27	5.79	3.99	4.83	6.14	8.78	6.98	9.31	6.1	7.53	20.1	2.82
Merged-chr2-165400406-1	chr2	165400306	165400506	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029021)	promoter-TSS (NM_029021)	-12.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	8.48	4.02	2.85	6.44	9.82	6.59	2.66	9.81	4.92	1.0	4.02	3.76
Merged-chr13-81767181-1	chr13	81767081	81767281	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16066.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.63	4.78	3.42	4.02	7.36	9.41	4.98	6.06	2.75	3.51	10.55	3.13
Merged-chr19-21176111-2	chr19	21176018	21176218	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71408.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	8.08	11.57	10.84	16.09	3.27	7.84	8.3	16.99	14.75	10.54	11.05	8.14
Merged-chr16-62832632-3	chr16	62832540	62832740	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 1 of 9)	intron (NM_026577, intron 1 of 9)	14400.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	11.31	10.82	5.7	9.25	9.41	7.21	5.65	5.47	12.59	6.03	27.13	7.21
Merged-chr1-40392741-1	chr1	40392641	40392841	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36829.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	3.23	1.26	2.28	7.24	0.41	4.7	6.31	6.73	1.38	1.0	9.55	3.45
Merged-chr18-31939323-1	chr18	31939223	31939423	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144862, intron 1 of 9)	CpG	7816.0	NM_144862	225341.0	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	5.25	6.79	2.28	4.83	4.91	7.53	8.64	8.78	1.97	4.52	1.51	5.33
Merged-chr15-6569934-2	chr15	6569827	6570027	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9920.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.27	9.06	7.42	4.42	4.09	11.92	6.64	6.76	11.01	11.55	7.03	4.39
Merged-chr10-105574256-1	chr10	105574156	105574356	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038032)	promoter-TSS (NR_038032)	223.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.44	1.76	1.14	3.22	3.68	0.0	5.31	3.2	4.33	4.52	4.02	5.95
Merged-chr18-64956093-1	chr18	64955993	64956193	+	755.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	MTA_Mm|LTR|ERVL-MaLR	-67434.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	4.53	1.14	0.0	0.41	2.82	0.0	0.31	12.39	5.02	13.06	5.01
Merged-chr19-32960844-2	chr19	32960734	32960934	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-196278.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	7.67	4.78	3.99	2.82	13.09	9.41	10.3	12.11	6.88	5.52	11.56	11.59
Merged-chr17-36044971-2	chr17	36044876	36045076	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034909, intron 1 of 2)	MLT1F1|LTR|ERVL-MaLR	2015.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.0	0.25	0.0	0.4	10.64	10.35	3.99	3.39	12.98	7.03	11.56	3.13
Merged-chr18-82903178-2	chr18	82903074	82903274	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7705.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	2.83	2.26	3.42	2.01	2.05	7.84	1.0	6.5	14.95	15.57	8.04	2.82
Merged-chr4-41390299-1	chr4	41390199	41390399	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001290454)	TTS (NM_001290454)	38336.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	8.08	5.53	3.42	6.84	4.09	7.53	4.65	8.19	6.69	11.05	7.03	3.76
Merged-chr3-96499653-3	chr3	96499512	96499712	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25573.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	10.09	3.27	5.7	8.85	9.0	7.53	3.32	5.13	7.67	16.57	7.03	14.41
Merged-chr18-88866024-1	chr18	88865924	88866124	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28183.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.23	1.76	1.14	6.44	5.73	1.25	8.3	8.89	5.9	1.0	4.02	6.27
Merged-chr14-48199215-1	chr14	48199115	48199315	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003630, intron 1 of 2)	B4A|SINE|B4	499.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	4.04	4.53	2.28	4.83	5.73	8.15	5.65	8.89	0.79	1.51	1.0	0.0
Merged-chr5-64600097-3	chr5	64599981	64600181	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045078, intron 3 of 3)	intron (NR_045078, intron 3 of 3)	10618.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	7.67	7.55	13.12	6.03	2.45	10.98	6.64	10.74	10.82	5.52	9.55	7.21
Merged-chr15-35140002-1	chr15	35139902	35140102	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	RMER17C-int|LTR|ERVK	15804.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	4.04	0.5	6.85	7.24	6.55	2.51	7.97	7.99	6.29	6.53	12.06	2.19
Merged-chr1-120122368-3	chr1	120122242	120122442	+	755.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1155.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	6.86	8.05	10.84	13.27	10.23	7.53	8.97	12.73	9.05	19.08	8.54	11.59
Merged-chr1-191278523-3	chr1	191278428	191278628	+	755.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39590.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	8.08	17.1	9.13	12.87	12.27	16.93	5.98	7.51	10.82	10.54	10.55	3.76
Merged-chr15-78771924-3	chr15	78771826	78772026	+	755.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	1519.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.06	3.02	8.56	6.03	11.86	13.8	10.96	10.74	6.49	13.56	12.06	8.14
Merged-chr2-118959855-3	chr2	118959779	118959979	+	755.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33382.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	8.08	11.07	11.41	1.21	6.95	3.45	2.66	5.61	89.1	89.37	61.81	58.89
Merged-chr11-50225858-3	chr11	50225766	50225966	+	755.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	CpG	531.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	10.9	4.02	10.84	12.47	6.95	16.62	13.29	8.3	9.64	11.05	10.55	6.89
Merged-chr10-57747229-2	chr10	57747129	57747329	+	755.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-37694.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.85	2.01	1.14	4.42	7.36	10.98	9.3	10.4	10.62	7.53	11.56	4.07
Merged-chr2-83625812-3	chr2	83625723	83625923	+	755.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18755.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	6.46	8.55	13.69	3.22	13.91	17.56	11.63	13.71	10.62	7.03	13.06	8.46
Merged-chr14-102898624-3	chr14	102898538	102898738	+	755.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83994.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	6.46	9.56	13.69	5.63	6.55	6.9	3.32	6.64	9.44	5.52	16.58	7.52
Merged-chr19-41475002-3	chr19	41474904	41475104	+	755.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-50248.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	10.09	10.06	15.4	13.27	11.05	13.48	7.97	14.5	9.24	8.54	13.06	13.16
Merged-chr2-59228773-3	chr2	59228716	59228916	+	755.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	MTC|LTR|ERVL-MaLR	67966.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.46	3.52	10.27	19.71	4.5	6.27	20.59	12.84	9.44	9.04	11.56	9.71
Merged-chr11-109394963-2	chr11	109394862	109395062	+	755.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 3 of 3)	intron (NM_010303, intron 3 of 3)	-30984.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	2.83	6.29	1.71	1.21	12.68	11.6	7.97	15.84	8.65	10.04	5.02	4.39
Merged-chr4-128787549-3	chr4	128787455	128787655	+	755.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 4 of 8)	L1ME4c|LINE|L1	18557.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.25	9.06	11.41	3.22	3.68	9.41	0.0	4.35	21.64	19.08	30.65	14.72
Merged-chr1-50962489-1	chr1	50962389	50962589	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	34966.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	1.21	2.01	1.71	5.63	9.41	9.41	3.65	6.81	2.75	11.55	4.02	2.51
Merged-chr18-67212886-1	chr18	67212786	67212986	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 7 of 11)	intron (NM_177137, intron 7 of 11)	7527.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	4.44	5.79	6.85	13.27	11.45	8.47	6.31	18.08	1.97	3.01	2.01	1.88
Merged-chr12-85350001-1	chr12	85349901	85350101	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-10639.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	4.44	5.53	3.99	2.82	13.91	3.76	6.64	5.38	9.24	5.52	2.51	5.01
Merged-chr13-101843796-1	chr13	101843696	101843896	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-75579.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.63	6.29	3.42	2.41	6.55	5.64	9.3	9.87	8.65	1.0	4.52	5.01
Merged-chr4-62308585-3	chr4	62308478	62308678	+	755.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 21 of 27)	B4A|SINE|B4	17031.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	10.9	6.79	19.4	15.69	14.32	6.27	16.94	19.07	8.46	8.03	16.58	5.64
Merged-chr2-121955309-3	chr2	121955173	121955373	+	755.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-728.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	11.31	4.78	2.28	5.63	6.95	10.35	16.28	10.26	6.29	9.04	25.63	5.01
Merged-chr15-86446290-2	chr15	86446195	86446395	+	755.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358062, intron 8 of 9)	MTC|LTR|ERVL-MaLR	168620.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.67	9.81	13.12	8.85	12.68	7.53	10.96	17.72	7.67	3.51	14.57	6.89
Merged-chr12-75658691-2	chr12	75658604	75658804	+	755.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	MTC|LTR|ERVL-MaLR	10833.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	6.06	5.53	7.99	11.26	8.59	10.35	4.98	15.0	10.03	8.03	6.03	5.95
Merged-chr2-11740671-1	chr2	11740571	11740771	+	755.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34959.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.81	0.75	5.13	2.82	8.59	9.41	5.98	8.75	3.15	6.03	4.52	11.28
Merged-chr8-45330449-3	chr8	45330355	45330555	+	755.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2741.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	8.88	8.05	14.83	2.41	5.73	15.37	4.65	7.32	14.36	10.54	7.03	9.4
Merged-chr9-14698056-3	chr9	14697946	14698146	+	755.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	35024.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	8.48	6.79	12.55	9.65	8.18	9.41	4.32	10.91	16.52	14.06	30.15	11.59
Merged-chr15-66768802-2	chr15	66768685	66768885	+	755.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	63044.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	8.48	6.04	3.99	2.41	8.59	15.99	8.3	7.99	9.24	12.55	13.06	6.89
Merged-chr17-45630154-2	chr17	45630119	45630319	+	755.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001013767)	TTS (NM_001013767)	-28117.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	2.83	4.02	2.28	2.41	3.68	9.41	2.33	1.46	9.05	2.01	4.52	3.13
Merged-chr12-103338397-3	chr12	103338338	103338538	+	755.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	17563.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	9.69	4.53	17.11	12.87	6.14	4.39	11.96	4.65	9.83	6.03	8.54	13.78
Merged-chr10-20534063-3	chr10	20533960	20534160	+	755.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	UCON26|Unknown|Unknown	14268.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.67	11.32	3.42	4.83	2.86	10.03	4.65	18.31	12.0	4.02	8.54	9.08
Merged-chr11-69849410-3	chr11	69849325	69849525	+	755.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2781.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	2.42	7.8	11.41	11.26	11.45	20.7	14.95	18.95	9.44	7.03	7.03	7.83
Merged-chr12-82265778-4	chr12	82265636	82265836	+	755.09375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-45613.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.04	1.76	1.14	3.62	4.5	6.9	4.98	5.33	12.39	6.53	8.04	4.7
Merged-chr12-87386016-2	chr12	87385925	87386125	+	755.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	2330.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	8.48	5.28	15.97	2.82	11.45	16.93	6.31	7.85	8.65	8.03	6.53	5.95
Merged-chr7-68667865-2	chr7	68667755	68667955	+	755.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49399.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	2.83	7.04	23.96	0.0	8.18	10.66	11.29	7.54	9.24	6.53	17.59	5.64
Merged-chr5-139389813-3	chr5	139389669	139389869	+	755.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-135.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	1.62	3.52	5.7	10.05	6.55	9.72	5.31	14.19	3.34	5.52	7.54	7.21
Merged-chr2-112267028-3	chr2	112266893	112267093	+	755.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133649, exon 1 of 25)	exon (NM_133649, exon 1 of 25)	679.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	8.88	7.29	3.42	8.85	3.27	8.15	3.32	6.17	9.24	10.54	9.04	10.02
Merged-chr10-42144954-2	chr10	42144842	42145042	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126560.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	8.48	7.04	18.25	6.03	12.68	6.27	11.63	12.39	4.33	6.03	7.54	6.89
Merged-chr5-67259984-1	chr5	67259884	67260084	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028975)	promoter-TSS (NM_028975)	-581.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	2.02	2.01	3.99	2.41	3.68	2.2	2.99	2.3	3.54	4.02	2.01	7.52
Merged-chr11-43529330-3	chr11	43529184	43529384	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045530, intron 1 of 5)	CpG	535.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	4.44	7.55	3.42	11.26	4.09	4.7	3.32	8.16	4.33	5.52	6.03	4.07
Merged-chr6-149307941-1	chr6	149307841	149308041	+	755.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-1473.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	4.04	5.79	1.14	3.22	5.73	5.64	4.32	0.76	11.41	14.56	11.05	4.07
Merged-chr3-119745950-1	chr3	119745850	119746050	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310711, intron 7 of 13)	intron (NM_001310711, intron 7 of 13)	37438.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.23	2.52	3.42	5.63	7.36	0.0	2.33	8.94	0.39	1.0	2.01	3.76
Merged-chr1-6976410-1	chr1	6976310	6976510	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	-112510.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.44	3.52	7.99	10.46	11.05	7.21	6.31	14.64	5.7	7.53	8.04	7.52
Merged-chr14-103469296-2	chr14	103469201	103469401	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44040.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	8.88	4.02	3.42	6.44	12.68	10.35	5.31	7.96	13.57	8.03	12.06	6.89
Merged-chr3-152104619-2	chr3	152104527	152104727	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 4 of 5)	ID4_|SINE|ID	61273.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	12.52	1.76	10.27	3.22	12.27	16.62	12.29	13.15	3.34	2.51	2.51	2.51
Merged-chr9-14717945-1	chr9	14717845	14718045	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177905, intron 10 of 18)	intron (NM_177905, intron 10 of 18)	22788.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	4.44	1.26	5.7	0.0	8.59	4.39	1.33	5.41	4.72	4.02	9.04	3.45
Merged-chr16-4667373-1	chr16	4667273	4667473	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 6 of 27)	intron (NM_030205, intron 6 of 27)	12347.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	3.63	2.77	0.0	1.21	4.09	8.47	1.66	6.59	12.0	6.53	6.03	7.83
Merged-chr8-108699232-1	chr8	108699132	108699332	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15412.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.02	3.02	2.28	4.42	8.59	9.41	1.0	5.69	3.15	0.5	7.54	0.0
Merged-chr5-92466110-2	chr5	92466002	92466202	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7545.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	7.27	5.28	5.7	6.44	12.27	8.15	5.31	7.32	15.74	7.03	10.05	4.07
Merged-chr5-135976063-1	chr5	135975963	135976163	+	755.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1587.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.4	0.0	0.0	0.8	2.05	0.63	0.66	0.67	4.92	13.05	15.07	5.01
Merged-chr8-117370578-1	chr8	117370478	117370678	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	21408.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.04	1.51	1.14	2.82	2.05	2.2	3.99	7.07	2.75	4.02	7.54	0.63
Merged-chr9-86449835-1	chr9	86449735	86449935	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027394, intron 2 of 9)	intron (NM_027394, intron 2 of 9)	15081.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.81	6.54	2.85	2.41	5.73	6.9	6.98	8.02	4.72	7.03	7.03	7.83
Merged-chr9-60837524-3	chr9	60837411	60837611	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	43069.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	2.83	7.29	14.26	8.45	17.18	21.01	11.63	31.4	5.11	6.03	9.55	7.21
Merged-chr10-41870308-1	chr10	41870208	41870408	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-17131.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	6.06	4.78	7.42	6.84	12.68	9.72	5.65	7.65	7.67	2.51	11.05	6.89
Merged-chr5-72820277-1	chr5	72820177	72820377	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	48171.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.75	1.14	5.23	9.41	8.47	3.65	7.01	6.88	9.04	6.53	0.63
Merged-chr1-195038149-1	chr1	195038049	195038249	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_015566)	TTS (NR_015566)	602.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	2.42	2.52	0.0	2.01	7.77	3.76	6.31	7.04	3.54	5.02	6.53	0.94
Merged-chr4-8863944-1	chr4	8863844	8864044	+	755.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001277149, exon 36 of 38)	exon (NM_001277149, exon 36 of 38)	112620.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.23	5.79	7.99	4.83	2.05	2.2	0.0	2.61	14.36	5.52	8.04	9.08
Merged-chr4-141742107-1	chr4	141742007	141742207	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4568.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	1.62	1.01	2.85	0.4	7.36	7.21	3.99	11.33	0.98	0.0	0.0	0.31
Merged-chr3-96661668-3	chr3	96661563	96661763	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302471, intron 27 of 29)	RLTR12F|LTR|ERVK	-8468.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	10.5	6.54	11.41	3.22	8.18	5.96	5.31	6.45	11.01	14.56	6.53	5.33
Merged-chr6-28723197-1	chr6	28723097	28723297	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 13 of 23)	intron (NM_019776, intron 13 of 23)	108550.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	9.69	1.51	2.85	5.23	4.91	3.45	5.65	5.58	4.33	3.01	6.53	4.07
Merged-chr1-162040761-1	chr1	162040661	162040861	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172646, intron 16 of 19)	L1MC4|LINE|L1	35792.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	4.44	2.77	5.7	2.41	9.82	10.98	6.64	8.69	4.13	9.04	4.52	1.88
Merged-chr12-21523184-1	chr12	21523084	21523284	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-105748.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.04	11.57	9.7	9.25	3.68	5.02	1.0	3.08	0.0	0.0	1.0	0.63
Merged-chr11-61638951-3	chr11	61638828	61639028	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER76|LTR|ERVL	-14393.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	4.44	6.29	11.98	5.23	5.32	9.72	2.66	7.96	13.18	13.05	9.55	5.01
Merged-chr18-21653296-1	chr18	21653196	21653396	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081403)	promoter-TSS (NM_001081403)	-928.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	2.02	5.79	2.28	3.62	2.05	4.7	7.64	7.6	0.39	2.51	4.52	1.57
Merged-chr5-63821364-2	chr5	63821265	63821465	+	754.983337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	8870.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.65	2.01	7.42	9.65	8.18	8.78	5.98	7.18	11.41	15.57	13.57	9.71
Merged-chr2-124618426-5	chr2	124618655	124618855	+	754.9533690000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	8459.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.85	1.51	3.42	5.63	8.59	9.41	2.99	3.39	7.28	5.02	1.0	1.88
Merged-chr15-58272623-3	chr15	58272501	58272701	+	754.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51568.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	10.9	2.77	15.4	9.25	22.09	10.66	22.59	21.28	8.65	14.06	18.09	11.28
Merged-chr7-19818596-3	chr7	19818483	19818683	+	754.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	4172.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	10.09	5.28	6.85	2.01	15.96	17.56	15.28	7.91	10.23	7.53	10.55	10.34
Merged-chr8-126876636-3	chr8	126876506	126876706	+	754.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27586.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	5.65	5.03	6.28	11.66	9.41	14.74	4.98	12.0	13.77	10.04	11.05	9.71
Merged-chr5-112297482-3	chr5	112297382	112297582	+	754.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20791.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.67	5.28	9.7	9.65	7.36	7.21	8.3	27.81	6.1	4.02	14.07	14.72
Merged-chr2-165333372-3	chr2	165333269	165333469	+	754.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6890.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.46	6.29	10.27	7.24	13.09	7.84	12.29	16.68	9.64	9.54	13.57	15.35
Merged-chrX-99487525-3	chrX	99487451	99487651	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16816.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	9.69	5.53	5.13	8.45	11.45	8.15	7.64	13.71	11.21	4.52	12.06	5.95
Merged-chr2-84794148-3	chr2	84794052	84794252	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-4676.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	18.17	34.21	10.27	11.26	12.27	33.87	8.3	4.01	35.01	24.6	20.6	8.46
Merged-chr7-19701196-3	chr7	19701101	19701301	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016871)	TTS (NM_016871)	-2013.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	10.09	13.33	9.13	6.44	13.09	9.41	8.97	9.39	10.82	9.04	12.56	3.76
Merged-chr10-115314476-3	chr10	115314328	115314528	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1163.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	1.62	8.55	7.99	5.23	3.27	11.6	5.98	4.63	9.44	10.04	7.54	10.34
Merged-chrX-152178993-3	chrX	152178915	152179115	+	754.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005475)	promoter-TSS (NM_001005475)	6.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	13.33	13.08	10.84	15.69	4.91	7.53	8.64	11.66	6.69	10.54	11.05	13.16
Merged-chr13-3825909-3	chr13	3825806	3826006	+	754.8388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11851.0	NM_020036	80796.0	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	10.09	10.31	7.99	19.31	13.5	7.21	13.29	14.92	8.46	11.05	16.08	7.52
Merged-chr14-31399458-2	chr14	31399342	31399542	+	754.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	18235.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.23	3.77	3.42	2.82	9.0	2.2	10.96	13.93	8.85	3.01	8.54	8.14
Merged-chr15-25406204-2	chr15	25406094	25406294	+	754.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	7570.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.44	7.29	6.28	3.22	12.68	18.81	10.3	12.7	7.08	10.04	10.55	6.58
Merged-chr12-78915994-1	chr12	78915894	78916094	+	754.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9056.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.4	0.5	1.14	0.0	6.55	8.78	7.31	6.59	0.0	0.0	3.01	0.0
Merged-chr16-30975391-3	chr16	30975287	30975487	+	754.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106045.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	12.11	5.79	21.11	12.47	9.41	11.6	8.97	18.06	9.24	19.58	14.57	8.46
Merged-chr3-133582170-3	chr3	133582094	133582294	+	754.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37804.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.65	4.28	10.27	10.86	7.36	10.35	3.32	8.38	14.16	9.04	9.04	6.58
Merged-chr5-34232028-3	chr5	34231930	34232130	+	754.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-44320.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	12.52	4.78	10.27	10.05	21.68	13.8	11.63	18.73	10.03	13.56	7.03	7.83
Merged-chr5-114769732-1	chr5	114769632	114769832	+	754.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019834, exon 2 of 19)	exon (NM_019834, exon 2 of 19)	3759.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	4.44	5.28	3.99	4.42	9.82	12.86	6.31	13.93	7.67	7.03	9.55	0.63
Merged-chr8-83535953-2	chr8	83535871	83536071	+	754.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5122.0	NM_146270	258267.0	Mm.377401	NM_146270	ENSMUSG00000047286	Olfr370	MOR267-16|MOR26716	olfactory receptor 370	protein-coding	8.08	9.06	5.7	5.63	13.5	14.42	5.98	13.29	1.18	1.0	0.0	0.94
Merged-chr12-70707577-1	chr12	70707477	70707677	+	754.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117937.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	5.25	4.78	7.99	7.24	8.59	5.33	4.98	7.88	1.18	1.0	3.01	0.63
Merged-chr8-11411925-1	chr8	11411825	11412025	+	754.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 16 of 47)	intron (NM_009932, intron 16 of 47)	-66004.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	2.42	2.52	2.28	1.61	7.36	8.15	7.97	5.5	0.0	0.5	4.02	4.07
Merged-chr16-33546546-3	chr16	33546457	33546657	+	754.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 3 of 11)	intron (NM_001083902, intron 3 of 11)	27962.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	5.65	4.28	14.26	9.25	8.18	6.9	28.57	27.36	13.77	10.54	14.57	3.76
Merged-chr4-155694269-2	chr4	155694161	155694361	+	754.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178699)	promoter-TSS (NM_178699)	-81.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	9.69	10.56	2.28	6.84	9.41	13.17	8.3	11.66	9.24	4.52	7.54	4.07
Merged-chr3-149098946-2	chr3	149098869	149099069	+	754.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144334.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	7.27	6.04	11.98	9.65	15.96	9.09	4.98	16.93	6.49	8.54	10.05	10.65
Merged-chr4-63307546-3	chr4	63307462	63307662	+	754.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025685, intron 36 of 60)	intron (NM_025685, intron 36 of 60)	-36994.0	NM_008768	18405.0	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	5.25	8.8	2.28	5.63	13.5	9.41	8.3	16.23	15.93	11.05	14.57	9.71
Merged-chrX-168455503-3	chrX	168455377	168455577	+	754.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033330, intron 2 of 19)	(TG)n|Simple_repeat|Simple_repeat	121754.0	NM_001033330	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	6.46	5.03	8.56	10.46	4.09	5.02	10.96	7.65	8.65	10.54	13.57	9.4
Merged-chr12-40548032-3	chr12	40547933	40548133	+	754.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	101980.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.25	5.79	5.13	8.45	4.91	12.23	9.3	5.38	14.95	13.56	15.58	7.52
Merged-chr12-12222189-1	chr12	12222089	12222289	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39950.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	8.88	1.01	6.85	6.44	8.59	5.96	5.31	6.06	8.46	6.53	1.0	7.83
Merged-chr5-120579447-1	chr5	120579347	120579547	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9166.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	5.65	7.55	0.57	4.83	8.18	5.64	6.98	7.57	8.26	2.01	2.51	4.07
Merged-chr11-85844726-1	chr11	85844626	85844826	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12111.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	4.44	9.31	2.28	5.63	9.0	11.6	11.96	4.65	5.11	9.54	8.04	4.7
Merged-chr2-30636490-2	chr2	30636422	30636622	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41478.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.04	1.26	9.7	11.66	7.77	6.27	7.97	7.77	8.46	6.03	13.57	16.6
Merged-chr9-58581585-2	chr9	58581522	58581722	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-618.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	5.65	7.55	1.71	5.63	2.86	5.02	8.97	11.5	8.26	7.03	13.06	12.22
Merged-chr14-66847746-2	chr14	66847639	66847839	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	20861.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	11.71	5.53	6.85	3.62	9.0	13.8	7.64	6.67	16.52	11.05	19.6	5.95
Merged-chr9-116183555-2	chr9	116183466	116183666	+	754.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5614.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	14.13	5.03	8.56	8.85	15.14	13.17	10.63	8.58	12.78	7.03	9.55	2.82
Merged-chr14-57372570-2	chr14	57372461	57372661	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	25922.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	8.08	3.52	3.42	7.24	14.32	8.15	3.65	9.48	12.78	13.56	10.05	10.34
Merged-chr14-63439260-2	chr14	63439203	63439403	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	2909.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	3.63	5.28	3.99	8.04	5.73	3.45	4.65	10.4	6.1	4.02	17.08	5.95
Merged-chr4-40777682-2	chr4	40777580	40777780	+	754.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19795.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.85	5.03	9.13	10.05	12.68	12.23	6.98	8.1	5.51	4.52	10.55	7.83
Merged-chr5-103763153-3	chr5	103763053	103763253	+	754.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	8580.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	10.09	7.55	11.41	8.04	11.05	12.86	7.97	8.38	14.75	10.04	10.55	9.08
Merged-chr8-106611296-3	chr8	106611182	106611382	+	754.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	7932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	13.73	7.55	14.26	0.8	6.95	4.08	11.63	8.86	6.29	9.54	8.54	5.64
Merged-chr10-13969169-3	chr10	13969052	13969252	+	754.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	2773.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	19.79	11.07	6.28	8.45	4.5	21.95	6.64	5.38	12.59	11.55	17.08	5.01
Merged-chr3-15203004-2	chr3	15202898	15203098	+	754.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129304.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	9.29	8.55	10.84	12.87	11.45	6.27	8.3	7.18	3.74	7.53	6.53	3.13
Merged-chr19-46837462-2	chr19	46837367	46837567	+	754.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102471, intron 1 of 6)	intron (NM_001102471, intron 1 of 6)	75858.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	9.69	7.55	10.27	7.24	11.05	15.37	11.29	14.72	4.13	10.54	11.56	3.45
Merged-chr16-64907654-3	chr16	64907482	64907682	+	754.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55581.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	7.67	3.27	4.56	7.64	4.5	4.7	3.32	8.8	10.03	6.53	11.56	7.21
Merged-chr10-127665330-3	chr10	127665236	127665436	+	754.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008668, intron 1 of 6)	intron (NM_008668, intron 1 of 6)	1367.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	8.88	11.07	9.13	6.84	14.73	10.03	10.96	9.08	15.14	13.05	15.07	6.89
Merged-chr10-42003775-2	chr10	42003661	42003861	+	754.516663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	14621.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	7.67	8.3	3.99	9.65	8.18	10.03	12.62	12.95	5.9	1.51	5.53	5.01
Merged-chr19-24979228-3	chr19	24979130	24979330	+	754.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17614.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	8.88	7.55	6.85	14.08	24.96	11.29	17.61	25.18	10.62	20.08	16.08	10.02
Merged-chr10-3972399-1	chr10	3972299	3972499	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	-676.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	7.27	4.02	1.14	2.41	4.09	5.64	5.98	7.23	4.72	1.0	10.05	3.13
Merged-chr17-62687598-1	chr17	62687498	62687698	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	193719.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	10.5	3.02	4.56	2.82	7.77	5.64	1.99	8.21	2.95	1.51	3.01	0.0
Merged-chr1-186834170-1	chr1	186834070	186834270	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-84812.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	10.09	11.82	9.7	6.84	0.0	2.51	1.99	0.36	8.65	6.03	7.54	5.95
Merged-chr1-132311640-3	chr1	132311546	132311746	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4479.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	12.11	4.53	9.13	2.82	13.91	5.64	9.63	13.01	16.33	14.56	12.56	2.51
Merged-chr11-94732918-1	chr11	94732818	94733018	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	28264.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	11.31	8.55	9.7	18.1	4.91	0.94	1.33	1.71	4.92	1.51	9.55	0.94
Merged-chr3-115644505-1	chr3	115644405	115644605	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70550.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.81	2.52	2.85	6.03	8.59	6.27	10.3	7.96	5.51	4.02	6.53	4.39
Merged-chr4-105254501-3	chr4	105254379	105254579	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97132.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	8.08	8.05	6.85	7.24	5.73	6.9	8.97	7.12	5.7	13.56	15.07	5.95
Merged-chr12-56428383-2	chr12	56428288	56428488	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82494.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	2.42	2.01	2.28	3.62	3.68	2.82	5.98	5.69	10.42	5.52	16.08	6.27
Merged-chr3-135211069-2	chr3	135210974	135211174	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-1489.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	2.42	9.31	4.56	2.41	11.05	9.41	10.96	10.12	11.21	16.57	10.05	4.7
Merged-chr8-70702678-5	chr8	70702496	70702696	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	4857.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	2.42	6.54	11.98	5.63	4.09	11.29	7.97	4.68	10.62	8.03	3.01	4.07
Merged-chr14-61331400-3	chr14	61331280	61331480	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21627.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	9.69	9.06	17.11	2.41	11.86	6.59	4.32	7.09	10.23	12.55	4.02	6.27
Merged-chr5-150519746-2	chr5	150519647	150519847	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1588.0	NM_001159693	545824.0	Mm.380068	NM_001159693	ENSMUSG00000056586	Zar1l	XM_359419	zygote arrest 1-like	protein-coding	5.25	7.8	5.7	12.87	10.64	8.47	2.66	10.99	7.08	4.02	8.54	12.84
Merged-chr14-9468863-3	chr14	9468757	9468957	+	754.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-415238.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	7.27	4.02	6.28	8.04	11.86	7.53	6.98	17.78	23.6	13.56	24.12	10.02
Merged-chr18-35156906-3	chr18	35156817	35157017	+	754.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009818, intron 3 of 17)	MTE2b|LTR|ERVL-MaLR	38005.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	12.52	9.81	11.41	13.67	7.36	5.02	8.97	17.36	13.18	10.04	5.53	16.6
Merged-chr9-62367844-2	chr9	62367734	62367934	+	754.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	26491.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	13.33	8.05	13.12	11.26	6.55	7.53	5.98	6.93	4.52	2.51	5.53	4.7
Merged-chr15-51803477-3	chr15	51803390	51803590	+	754.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	61971.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	8.08	10.82	7.99	14.08	4.91	9.72	9.97	7.93	11.8	7.53	18.59	5.64
Merged-chr13-34256820-2	chr13	34256707	34256907	+	754.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	L1MB1|LINE|L1	88375.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	2.02	1.51	13.69	4.42	10.64	7.21	7.31	11.36	12.19	8.54	9.55	7.83
Merged-chr7-13009216-3	chr7	13009115	13009315	+	754.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024699, intron 1 of 2)	intron (NM_001024699, intron 1 of 2)	637.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	9.69	8.55	7.99	12.87	10.64	9.41	13.95	12.11	21.64	9.04	15.07	6.58
Merged-chrX-157612970-3	chrX	157612839	157613039	+	754.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14224.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	1.62	3.52	6.28	4.42	15.55	12.86	23.25	35.24	7.67	4.52	11.56	9.71
Merged-chr11-82048219-3	chr11	82048129	82048329	+	754.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013654)	TTS (NM_013654)	2517.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	9.29	11.57	6.28	12.07	8.18	8.78	3.65	5.07	13.18	16.57	16.08	12.53
Merged-chr15-86051255-2	chr15	86051155	86051355	+	754.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6440.0	NM_172611	223752.0	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	7.27	1.51	2.85	0.0	9.0	13.17	1.66	7.07	12.0	2.51	9.55	2.51
Merged-chr3-115644118-2	chr3	115644021	115644221	+	754.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70934.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.62	0.5	2.85	5.63	5.73	12.54	10.3	12.95	8.65	5.02	11.56	10.34
Merged-chr10-42171201-1	chr10	42171101	42171301	+	754.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	105541.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	3.63	5.79	0.0	6.03	6.55	7.21	6.64	10.32	7.28	7.03	3.52	3.13
Merged-chr2-11535002-2	chr2	11534861	11535061	+	754.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	18968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.04	4.02	3.42	14.08	8.18	5.33	8.97	10.49	9.44	6.53	9.55	8.77
Merged-chr17-21733778-4	chr17	21733662	21733862	+	754.287476	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164676)	promoter-TSS (NM_001164676)	38.0	NM_001164676	381067.0	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	10.9	8.8	4.56	13.67	4.5	8.47	9.97	8.1	8.85	8.03	12.06	10.02
Merged-chr11-93988728-2	chr11	93988631	93988831	+	754.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7360.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	9.69	9.81	5.13	11.26	18.82	9.72	9.3	7.77	8.06	7.03	6.03	5.01
Merged-chr18-69666914-2	chr18	69666794	69666994	+	754.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258665.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	2.42	4.02	4.56	10.46	6.95	11.29	5.31	16.79	13.18	13.05	9.55	2.82
Merged-chr17-17909594-2	chr17	17909498	17909698	+	754.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21774.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.23	11.32	13.12	6.44	3.27	5.33	8.64	9.06	14.36	7.53	6.03	6.58
Merged-chr7-46987083-1	chr7	46986983	46987183	+	754.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10451.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.25	2.52	0.57	1.21	8.18	5.02	10.63	8.55	5.51	6.03	3.01	7.83
Merged-chr13-44926501-2	chr13	44926402	44926602	+	754.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 8 of 9)	Lx7|LINE|L1	75594.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.23	7.55	1.71	9.65	11.45	8.15	7.97	7.74	12.19	8.03	6.53	7.52
Merged-chr7-83802144-3	chr7	83802048	83802248	+	754.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7309.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	18.17	15.85	12.55	4.83	18.41	8.78	9.3	12.67	8.26	9.04	10.05	8.14
Merged-chr10-98515010-3	chr10	98514901	98515101	+	754.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163134.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	14.13	10.56	7.99	7.64	7.77	19.13	14.62	12.84	9.44	7.53	11.56	6.27
Merged-chr8-77535203-2	chr8	77535078	77535278	+	754.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14219.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	9.69	9.06	8.56	7.24	14.32	10.03	7.31	5.66	2.56	5.02	6.53	4.07
Merged-chrX-12936994-1	chrX	12936894	12937094	+	754.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001272033, exon 1 of 1)	exon (NM_001272033, exon 1 of 1)	121.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	6.06	3.52	2.28	7.24	9.41	10.03	9.3	8.97	2.56	6.53	7.03	8.77
Merged-chr2-32083352-2	chr2	32083248	32083448	+	754.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151493, exon 2 of 6)	non-coding (NR_151493, exon 2 of 6)	357.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	15.34	5.53	10.27	15.28	9.0	5.96	12.62	6.39	12.59	7.53	12.06	12.53
Merged-chr12-32207055-3	chr12	32206957	32207157	+	754.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	1281.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	13.33	8.8	8.56	8.85	13.5	10.66	7.31	18.62	8.85	11.55	11.05	5.95
Merged-chr7-127274541-2	chr7	127274423	127274623	+	754.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-464.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	8.88	7.29	4.56	4.02	16.36	19.44	9.97	9.06	7.28	8.03	5.02	4.7
Merged-chr11-115132049-2	chr11	115131936	115132136	+	754.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169153, intron 1 of 6)	L2|LINE|L2	1956.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	7.67	10.31	11.98	6.84	14.73	11.29	6.98	4.35	10.62	4.52	7.03	5.33
Merged-chr19-56726613-2	chr19	56726526	56726726	+	754.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4254.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.44	6.79	6.85	4.02	13.91	10.66	7.97	11.94	7.87	6.03	11.56	14.1
Merged-chr1-128608306-2	chr1	128608206	128608406	+	754.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16007.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.67	8.05	9.13	8.04	22.09	10.98	6.98	17.61	8.65	4.02	7.54	4.7
Merged-chr5-130159900-3	chr5	130159827	130160027	+	754.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11892.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	7.67	5.79	11.98	2.41	8.18	4.7	9.97	4.88	2.95	7.53	6.03	5.64
Merged-chr10-24312387-3	chr10	24312297	24312497	+	754.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88880.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	4.85	8.05	3.99	11.66	11.45	12.23	14.62	12.14	7.87	18.58	10.05	10.96
Merged-chr15-80076953-3	chr15	80076865	80077065	+	754.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013762)	TTS (NM_013762)	1614.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	6.86	7.55	10.27	6.03	8.59	12.86	3.32	10.09	12.98	9.04	14.07	10.65
Merged-chr16-36588173-2	chr16	36588078	36588278	+	754.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-26044.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	6.06	10.31	14.26	11.66	6.95	9.72	9.97	10.68	12.78	6.03	10.05	8.46
Merged-chr4-141652499-2	chr4	141652408	141652608	+	754.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	11607.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	10.09	12.07	1.71	7.24	0.82	2.82	0.0	1.74	11.21	19.08	11.05	7.52
Merged-chr16-20619999-3	chr16	20619911	20620111	+	754.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028420, exon 2 of 2)	3' UTR (NM_028420, exon 2 of 2)	1267.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	12.52	5.53	6.85	8.04	10.64	17.87	9.63	9.53	11.41	12.05	13.57	7.52
Merged-chr15-63614280-2	chr15	63614208	63614408	+	754.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134700.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.85	2.26	6.85	8.04	9.82	12.23	8.97	20.8	9.05	0.5	6.03	7.52
Merged-chr15-25485600-2	chr15	25485486	25485686	+	754.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71394.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	2.02	6.29	7.42	1.61	2.86	11.92	5.65	8.07	13.18	7.53	17.59	7.21
Merged-chr9-40757405-3	chr9	40757303	40757503	+	754.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43870.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.06	8.55	7.99	5.23	7.77	7.53	5.31	2.21	15.54	16.07	11.56	8.14
Merged-chr5-135494432-3	chr5	135494334	135494534	+	754.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	50688.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	12.92	9.31	13.12	8.04	14.32	9.72	2.33	8.41	13.37	14.56	23.11	10.65
Merged-chr11-21236577-3	chr11	21236471	21236671	+	754.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12D|LTR|ERVK	-2461.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	9.69	6.79	6.85	11.66	9.82	10.03	9.3	12.5	19.47	5.52	17.59	10.34
Merged-chr5-98030648-3	chr5	98030543	98030743	+	754.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133738, exon 1 of 17)	5' UTR (NM_133738, exon 1 of 17)	319.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.65	6.79	13.12	7.64	13.91	6.59	13.62	12.76	7.47	13.56	13.06	6.89
Merged-chr7-61958403-1	chr7	61958303	61958503	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015599, intron 3 of 3)	RMER15-int|LTR|ERVL	-18297.0	NR_030557	100124439.0		NR_030557	ENSMUSG00000093187	Mir344-2	Mirn344-2|mir-344-2	microRNA 344-2	ncRNA	2.42	2.01	5.7	6.84	4.09	2.51	6.31	5.97	14.36	3.51	8.04	3.45
Merged-chr4-132573965-2	chr4	132573851	132574051	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	9884.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	12.52	4.53	5.7	4.83	7.77	6.27	8.97	11.07	13.96	5.02	8.54	5.01
Merged-chr8-56313130-1	chr8	56313030	56313230	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	18578.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.81	1.26	3.42	0.8	5.73	3.45	4.98	6.17	1.18	5.02	3.01	4.7
Merged-chr2-35755959-2	chr2	35755865	35756065	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59233.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	7.27	8.8	11.41	4.42	8.18	7.84	6.64	10.21	9.05	15.57	7.03	3.13
Merged-chr4-141274785-2	chr4	141274686	141274886	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3653.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	7.67	4.02	2.28	2.01	9.0	12.86	6.64	10.99	8.46	11.05	10.05	3.45
Merged-chr4-128617902-3	chr4	128617847	128618047	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	672.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	6.06	10.82	1.14	9.65	4.91	7.84	0.66	3.06	6.69	7.53	3.52	5.01
Merged-chr10-22307545-1	chr10	22307445	22307645	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	825.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.06	8.3	11.41	4.83	4.5	5.64	7.31	5.83	6.29	4.02	6.53	2.19
Merged-chr6-90710738-2	chr6	90710584	90710784	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	5845.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	10.09	3.77	5.7	6.84	2.05	1.25	5.31	2.05	0.79	1.0	2.01	0.94
Merged-chr10-86827150-3	chr10	86827056	86827256	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175331, intron 12 of 13)	MIRb|SINE|MIR	48151.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	8.08	8.55	7.99	7.64	11.86	5.64	14.62	14.8	7.67	8.54	6.53	8.77
Merged-chr2-73561811-3	chr2	73561712	73561912	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18526.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	6.06	6.29	3.42	12.07	10.64	9.72	3.32	7.71	18.49	20.59	24.62	9.08
Merged-chr1-134850551-1	chr1	134850451	134850651	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081307, intron 13 of 23)	intron (NM_001081307, intron 13 of 23)	-46830.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	6.06	9.06	18.83	13.27	0.0	0.63	0.66	1.88	0.2	2.51	1.51	0.94
Merged-chr8-54671997-1	chr8	54671897	54672097	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172152, intron 9 of 29)	intron (NM_001172152, intron 9 of 29)	46681.0	NM_028220	244484.0	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	6.46	2.26	7.99	6.84	0.82	7.53	1.66	5.44	5.51	5.52	5.02	4.39
Merged-chr7-126676405-1	chr7	126676305	126676505	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133670)	promoter-TSS (NM_133670)	13.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	4.44	5.53	2.85	4.83	4.91	6.9	4.32	6.64	3.74	6.53	7.54	2.51
Merged-chr5-134551863-1	chr5	134551763	134551963	+	754.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	571.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.85	4.28	3.99	4.02	7.36	2.51	10.3	3.59	11.41	9.54	3.52	6.89
Merged-chr3-138893708-1	chr3	138893608	138893808	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121195, intron 3 of 7)	intron (NR_121195, intron 3 of 7)	151500.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	1.62	1.01	2.28	2.41	2.86	7.84	2.33	6.42	6.1	0.5	4.52	6.89
Merged-chr1-80670621-2	chr1	80670551	80670751	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	MTE2a|LTR|ERVL-MaLR	-5299.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.25	2.77	2.28	3.22	0.82	2.2	6.31	10.74	7.28	3.01	5.53	6.89
Merged-chr17-10039026-1	chr17	10038926	10039126	+	754.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-263160.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	3.23	2.26	2.85	8.04	2.05	1.88	1.33	3.22	2.95	3.51	16.08	6.89
Merged-chr13-56163057-3	chr13	56162953	56163153	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15832.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	9.69	5.03	18.25	8.45	13.91	14.11	21.26	25.32	16.52	6.03	12.56	5.01
Merged-chr17-84978661-1	chr17	84978561	84978761	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	13636.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	12.11	2.01	2.28	4.83	8.59	3.45	7.64	7.18	10.82	4.02	5.53	4.07
Merged-chr17-3010344-1	chr17	3010244	3010444	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73839.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	1.21	2.26	1.71	3.22	1.64	2.2	6.98	4.77	0.59	6.03	9.04	5.95
Merged-chr17-22352996-1	chr17	22352896	22353096	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355280, intron 4 of 6)	intron (NM_001355280, intron 4 of 6)	8404.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	7.27	2.77	5.13	9.65	8.18	6.59	3.32	8.38	12.98	4.02	16.58	7.21
Merged-chr11-70214485-1	chr11	70214385	70214585	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153081, intron 1 of 4)	CpG	575.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	11.71	10.56	2.85	4.02	1.23	2.51	3.99	2.61	6.1	4.02	6.03	1.25
Merged-chr4-154170468-1	chr4	154170368	154170568	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001162977)	promoter-TSS (NM_001162977)	-245.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	4.85	2.01	1.71	5.63	0.41	1.25	1.33	0.5	1.97	0.0	3.01	1.25
Merged-chr5-90596376-1	chr5	90596276	90596476	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252661, intron 13 of 13)	intron (NM_001252661, intron 13 of 13)	35167.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.4	0.75	0.0	0.0	2.45	5.33	6.64	5.58	0.2	0.0	3.01	0.94
Merged-chr8-34895313-1	chr8	34895213	34895413	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	B1F2|SINE|Alu	70377.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.62	2.26	1.71	5.23	0.82	3.14	5.31	9.11	8.65	6.53	4.02	3.13
Merged-chr16-96292063-1	chr16	96291963	96292163	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033149, intron 1 of 2)	intron (NM_033149, intron 1 of 2)	11031.0	NM_033149	93961.0	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.0	2.01	0.0	1.61	5.73	3.76	7.97	6.98	0.79	0.0	1.0	2.82
Merged-chr2-47088902-1	chr2	47088802	47089002	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1392297.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.02	1.51	0.57	0.0	0.41	5.02	3.32	7.26	2.16	2.01	4.02	6.89
Merged-chr5-38402456-3	chr5	38402361	38402561	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012363, intron 6 of 11)	ORR1D2|LTR|ERVL-MaLR	58072.0	NR_046191	78172.0	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	9.69	10.82	6.85	8.04	19.23	13.8	9.3	18.25	10.82	10.04	24.62	10.34
Merged-chr10-79835004-2	chr10	79834895	79835095	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	13974.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	6.86	2.26	9.13	6.03	2.86	10.03	3.65	8.47	11.8	7.03	11.05	5.64
Merged-chr3-87362423-1	chr3	87362323	87362523	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	4542.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.4	3.27	5.7	3.22	4.5	2.82	6.31	7.63	6.29	6.53	4.02	3.45
Merged-chr2-83929557-1	chr2	83929457	83929657	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027964, intron 3 of 8)	ORR1C2|LTR|ERVL-MaLR	11669.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.42	1.51	2.28	2.01	2.05	5.64	1.33	5.19	1.18	1.51	4.52	0.63
Merged-chr11-68875027-2	chr11	68874933	68875133	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13520.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	5.65	5.79	3.99	6.84	11.45	12.54	10.96	6.93	11.41	6.53	16.58	14.72
Merged-chr10-57571463-3	chr10	57571340	57571540	+	753.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38911.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	8.88	5.79	6.85	11.66	6.95	3.76	7.97	6.31	10.62	6.53	15.58	8.77
Merged-chr5-135118652-3	chr5	135118535	135118735	+	753.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152882, intron 2 of 16)	intron (NR_152882, intron 2 of 16)	11744.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	8.08	7.29	1.71	3.62	7.77	6.59	2.66	4.01	13.18	7.53	14.07	9.4
Merged-chr6-91472384-3	chr6	91472298	91472498	+	753.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133928, intron 1 of 2)	MIR3|SINE|MIR	1025.0	NM_133928	72170.0	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	9.29	7.04	11.98	3.22	11.05	6.27	5.31	11.3	15.14	7.03	15.07	6.89
Merged-chr15-36367516-2	chr15	36367400	36367600	+	753.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-84353.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.81	2.01	7.99	2.82	7.77	21.32	8.97	10.85	12.19	12.05	11.56	5.95
Merged-chr19-10297197-3	chr19	10297094	10297294	+	753.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7683.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	8.88	8.55	7.99	14.48	15.96	28.54	13.95	20.38	6.1	17.07	5.53	7.21
Merged-chr15-59705842-3	chr15	59705742	59705942	+	753.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57188.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.65	5.03	9.7	10.05	10.64	10.98	9.63	13.21	16.33	14.06	15.07	12.53
Merged-chr3-122509326-2	chr3	122509256	122509456	+	753.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25787.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	8.08	5.53	3.42	1.61	2.86	9.41	6.31	8.78	6.49	11.05	14.57	5.01
Merged-chr3-60541287-3	chr3	60541190	60541390	+	753.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	40111.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	8.08	8.8	10.27	2.01	15.14	16.93	3.99	10.54	15.34	16.07	13.06	9.71
Merged-chr17-66216121-3	chr17	66216035	66216235	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92615.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	6.46	2.77	17.11	9.25	6.95	6.27	8.97	24.93	8.85	4.02	13.06	10.96
Merged-chrX-12081844-3	chrX	12081714	12081914	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG-15595	-1261.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	9.69	5.28	10.27	1.61	15.14	9.72	2.33	3.59	13.77	18.08	12.06	8.77
Merged-chr10-41933073-3	chr10	41933002	41933202	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	45663.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	8.08	7.8	9.13	7.64	7.77	6.27	6.31	10.79	5.31	11.55	17.08	7.21
Merged-chr18-49978651-3	chr18	49978526	49978726	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-801.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	10.9	11.82	1.14	3.62	9.82	16.31	1.33	7.01	11.01	4.02	11.56	3.45
Merged-chr13-55519777-2	chr13	55519680	55519880	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6334.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	10.5	8.8	4.56	5.23	6.95	6.27	3.32	6.45	8.06	4.02	9.55	4.7
Merged-chr15-99330224-2	chr15	99330114	99330314	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	26930.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	3.23	8.05	7.42	1.61	12.27	7.21	1.99	5.8	7.28	9.04	15.58	5.33
Merged-chr8-108742898-1	chr8	108742798	108742998	+	753.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28254.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.67	2.01	0.0	10.86	8.59	7.84	5.65	10.07	4.72	3.01	4.52	12.53
Merged-chr6-83005708-2	chr6	83005606	83005806	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27765.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	9.69	8.55	9.13	7.64	7.77	11.92	6.98	11.58	5.7	2.01	11.56	4.07
Merged-chr1-153487012-2	chr1	153486941	153487141	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007842, intron 1 of 27)	CpG	619.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	4.04	5.03	2.85	4.02	2.86	7.84	11.63	9.59	13.57	9.54	5.02	9.71
Merged-chr13-112002763-2	chr13	112002666	112002866	+	753.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134830.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.42	0.5	1.71	1.61	11.05	7.53	4.98	15.62	9.24	13.05	11.05	5.95
Merged-chr14-122463524-2	chr14	122463410	122463610	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022987, intron 1 of 1)	CpG	2148.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	7.27	10.56	14.26	7.24	6.55	4.39	4.32	8.55	6.88	12.05	5.53	6.27
Merged-chr10-79682786-4	chr10	79682712	79682912	+	753.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	617.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	6.86	4.53	9.13	4.42	2.45	5.33	8.97	5.19	10.03	4.52	9.55	7.83
Merged-chr5-137331092-3	chr5	137330996	137331196	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359611, intron 4 of 14)	intron (NM_001359611, intron 4 of 14)	2486.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	8.48	14.09	12.55	8.04	10.64	6.27	1.66	7.82	12.19	14.06	6.03	9.08
Merged-chr19-28685670-1	chr19	28685570	28685770	+	753.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	-5593.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	4.44	3.52	7.42	10.86	8.59	10.03	10.96	12.53	7.67	0.0	7.54	6.27
Merged-chr5-122844004-1	chr5	122843904	122844104	+	753.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-6184.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	1.62	1.76	1.14	0.0	2.05	5.33	1.99	1.46	16.52	10.04	10.55	7.83
Merged-chr9-56506568-3	chr9	56506435	56506635	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87916.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	6.06	14.59	7.99	11.66	7.36	7.84	4.98	7.09	6.88	9.54	5.02	6.89
Merged-chr11-69110957-3	chr11	69110943	69111143	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9410.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	1.62	1.76	5.13	1.61	6.55	9.09	7.97	1.46	5.7	9.04	2.01	3.45
Merged-chr19-6997076-3	chr19	6996860	6997060	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026675)	promoter-TSS (NM_026675)	829.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.81	4.78	3.99	4.02	5.32	5.02	1.33	0.62	0.59	1.0	3.01	4.7
Merged-chr2-128743570-3	chr2	128743475	128743675	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	44660.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.06	9.81	12.55	12.87	16.36	8.47	5.65	11.8	10.03	19.58	10.55	16.92
Merged-chr10-19209927-3	chr10	19209832	19210032	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42694.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	8.88	7.55	12.55	6.44	8.59	10.03	4.65	12.36	21.64	14.56	16.08	5.95
Merged-chr7-19279700-3	chr7	19279567	19279767	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	382.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	5.25	7.8	2.28	3.22	7.36	7.84	3.65	4.82	8.06	9.54	7.03	7.21
Merged-chr14-103065802-3	chr14	103065711	103065911	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4405.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	13.73	6.29	9.7	4.02	12.68	13.8	4.65	9.98	15.54	16.07	10.55	8.14
Merged-chr1-88588226-2	chr1	88588111	88588311	+	753.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	36694.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	16.56	9.06	17.11	14.48	6.55	5.02	8.64	2.86	5.9	10.54	6.03	10.96
Merged-chr2-116067280-2	chr2	116067173	116067373	+	753.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	48.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	2.42	9.31	9.7	4.42	8.59	11.6	6.64	9.28	4.72	1.0	13.06	5.95
Merged-chr7-101465985-2	chr7	101465874	101466074	+	753.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-9402.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	9.69	10.56	9.7	8.85	14.32	7.53	8.64	15.39	2.75	4.02	6.03	1.25
Merged-chr14-31234153-3	chr14	31234058	31234258	+	753.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16285.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	6.86	9.81	10.27	12.07	15.14	9.72	5.31	8.3	12.19	13.56	12.56	6.89
Merged-chr4-133200507-2	chr4	133200441	133200641	+	753.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	4886.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	4.44	3.77	1.14	9.65	7.36	5.02	6.98	4.77	8.26	3.51	9.55	11.9
Merged-chr6-126921709-2	chr6	126921601	126921801	+	753.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207210, intron 1 of 14)	intron (NM_207210, intron 1 of 14)	138.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	4.04	3.27	6.85	8.45	10.23	5.96	7.97	6.45	8.46	4.02	8.54	5.01
Merged-chr12-85589479-5	chr12	85589372	85589572	+	753.604736	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9633.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.02	3.02	5.7	8.85	7.36	4.7	1.99	2.8	4.92	3.01	4.52	4.07
Merged-chr14-20253451-2	chr14	20253351	20253551	+	753.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15711.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	5.65	10.31	1.71	8.85	9.0	20.38	11.96	10.96	3.15	7.03	3.01	9.4
Merged-chr18-69667409-3	chr18	69667299	69667499	+	753.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258160.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	9.69	7.04	18.83	9.65	7.77	9.09	15.61	17.64	18.69	11.55	12.06	8.77
Merged-chr6-52306064-2	chr6	52305975	52306175	+	753.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7423.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	7.67	7.29	10.27	4.42	16.77	13.17	5.31	12.67	6.88	2.01	12.56	8.77
Merged-chr11-45698268-3	chr11	45698155	45698355	+	753.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109828.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	6.86	6.54	15.4	4.42	6.55	4.7	2.99	8.21	9.05	15.06	12.56	15.04
Merged-chr3-89339545-3	chr3	89339452	89339652	+	753.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009614)	TTS (NM_009614)	-1524.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	8.48	7.55	2.85	11.26	3.27	11.6	1.33	7.07	10.42	4.52	13.57	10.02
Merged-chr6-40818641-2	chr6	40818535	40818735	+	753.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68859.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	11.71	10.56	21.11	10.86	4.5	2.2	5.65	13.09	10.23	7.03	8.54	7.52
Merged-chr1-182906928-1	chr1	182906828	182907028	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47860.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.81	2.26	3.42	4.83	7.77	2.51	6.31	5.61	1.77	2.01	5.02	5.33
Merged-chr16-56062240-2	chr16	56062109	56062309	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	4679.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	9.69	6.54	4.56	3.62	8.18	8.47	9.63	11.94	7.47	5.52	13.57	6.58
Merged-chr1-33983732-2	chr1	33983637	33983837	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	Lx6|LINE|L1	-28088.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.04	5.28	7.99	18.5	13.5	17.25	7.97	13.4	9.05	8.54	11.05	4.07
Merged-chr13-13968980-2	chr13	13968875	13969075	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362405, intron 2 of 12)	intron (NM_001362405, intron 2 of 12)	14301.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	1.62	4.53	10.27	3.22	5.32	7.84	6.64	9.73	10.03	15.57	8.04	6.89
Merged-chr2-160010740-4	chr2	160010621	160010821	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5932.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.04	3.52	5.7	8.04	9.0	3.76	5.31	5.61	3.54	2.51	2.01	7.52
Merged-chr13-98031460-3	chr13	98031350	98031550	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	174715.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	15.34	11.32	12.55	15.28	7.36	12.54	4.32	14.66	9.24	6.53	8.54	9.08
Merged-chr2-72202393-1	chr2	72202293	72202493	+	753.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 11 of 26)	URR1A|DNA|hAT-Charlie	-83244.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.62	1.76	2.28	1.61	0.41	1.57	4.32	4.35	13.37	6.03	10.55	10.02
Merged-chr9-60600476-1	chr9	60600376	60600576	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001311095, intron 13 of 15)	intron (NM_001311095, intron 13 of 15)	-54594.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	12.92	7.55	10.84	22.52	2.45	2.51	4.65	4.57	1.97	3.51	4.52	1.25
Merged-chr13-52793728-2	chr13	52793628	52793828	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36523.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	4.04	4.02	9.13	2.82	8.18	3.76	10.63	9.73	9.83	1.0	10.05	4.7
Merged-chr9-21469202-2	chr9	21469102	21469302	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 4 of 19)	B3|SINE|B2	27362.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	8.88	4.02	0.0	2.41	2.45	7.21	1.99	7.29	9.24	7.03	6.53	5.95
Merged-chr4-136028108-1	chr4	136028008	136028208	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6459.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	3.23	3.02	1.14	2.01	7.77	4.39	2.99	3.67	6.1	1.51	9.55	5.01
Merged-chr1-174036194-2	chr1	174036094	174036294	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4439.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	1.62	0.5	1.14	2.41	4.5	10.03	4.98	7.21	9.05	6.53	10.05	3.13
Merged-chr9-96326629-3	chr9	96326519	96326719	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37096.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.08	5.03	6.85	12.07	4.5	5.64	8.3	11.66	7.47	7.53	15.58	15.98
Merged-chr14-21078141-1	chr14	21078041	21078241	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243041, intron 1 of 10)	intron (NM_001243041, intron 1 of 10)	1989.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	2.42	7.8	1.71	3.22	11.45	3.14	6.64	6.34	7.67	6.53	4.02	6.27
Merged-chr2-124707508-1	chr2	124707408	124707608	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53927.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.06	6.79	3.42	4.83	5.73	2.82	8.64	7.23	3.34	10.04	4.52	1.88
Merged-chr19-18624180-4	chr19	18624146	18624346	+	753.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7567.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.86	10.56	6.28	7.24	4.09	9.41	5.98	9.98	4.92	3.51	3.52	6.89
Merged-chr16-32643847-3	chr16	32643748	32643948	+	753.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-795.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	8.08	5.28	3.42	8.45	12.27	12.54	7.31	9.84	11.8	11.05	15.58	5.33
Merged-chr13-49271987-3	chr13	49271909	49272109	+	753.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23303.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	9.69	9.56	17.68	7.24	15.14	5.02	4.65	10.77	9.44	11.05	20.1	16.6
Merged-chr16-33568722-3	chr16	33568591	33568791	+	753.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	50096.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	11.71	8.55	7.99	8.04	8.18	17.25	18.6	6.36	8.46	12.55	10.55	8.46
Merged-chr5-67451082-2	chr5	67450976	67451176	+	753.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12822.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	4.85	4.02	5.13	7.24	8.59	10.03	10.3	10.93	6.69	11.05	18.59	10.96
Merged-chr19-29470135-3	chr19	29470029	29470229	+	753.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	51858.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.44	3.02	11.98	12.87	3.68	11.92	5.65	10.04	15.54	14.06	11.05	9.08
Merged-chr1-161058716-3	chr1	161058612	161058812	+	753.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172644, intron 7 of 16)	intron (NM_172644, intron 7 of 16)	11948.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	12.52	6.79	9.13	10.86	9.0	6.9	6.31	11.58	8.65	5.02	12.06	12.22
Merged-chr3-137879880-3	chr3	137879786	137879986	+	753.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	(TTG)n|Simple_repeat|Simple_repeat	12211.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	8.08	7.29	9.13	10.46	18.0	9.72	2.66	12.17	10.82	8.03	15.58	13.47
Merged-chr6-87807236-3	chr6	87807160	87807360	+	753.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	2497.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	8.88	5.28	6.85	5.23	13.91	3.76	5.31	6.0	5.9	4.52	10.55	8.14
Merged-chr5-108485425-2	chr5	108485325	108485525	+	753.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172716, intron 6 of 10)	intron (NM_172716, intron 6 of 10)	24093.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	5.65	5.53	18.83	3.22	7.36	10.03	7.97	9.5	12.19	11.05	10.55	13.16
Merged-chr8-13200561-2	chr8	13200445	13200645	+	753.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025768)	promoter-TSS (NM_025768)	79.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	5.65	6.79	9.13	14.48	7.36	7.84	10.63	13.18	8.65	11.55	19.09	8.77
Merged-chr17-83312676-3	chr17	83312596	83312796	+	753.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38235.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	7.67	9.06	11.41	9.65	9.82	13.17	15.28	10.96	11.01	12.05	6.53	9.4
Merged-chr14-31394207-3	chr14	31394113	31394313	+	753.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	23464.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.06	7.29	10.27	9.25	12.68	8.15	18.93	18.03	11.21	15.06	14.07	9.08
Merged-chr3-95631062-3	chr3	95630941	95631141	+	753.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001026212)	TTS (NM_001026212)	6061.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	13.33	6.04	11.41	8.85	11.05	12.23	15.94	17.66	6.29	11.55	18.59	6.89
Merged-chr2-73060037-3	chr2	73059940	73060140	+	753.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79594.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	8.88	6.54	6.85	5.63	13.91	12.23	2.66	8.78	12.59	14.06	9.04	12.22
Merged-chr3-51338313-3	chr3	51338267	51338467	+	753.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	L1MB8|LINE|L1	2277.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.27	4.78	13.69	8.45	8.18	5.96	10.63	13.35	4.13	11.05	4.52	8.46
Merged-chr2-18026527-2	chr2	18026415	18026615	+	753.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028378)	promoter-TSS (NR_028378)	-734.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	8.48	6.29	7.42	3.62	5.73	7.84	1.33	5.19	5.51	3.51	4.02	4.39
Merged-chr8-71308127-2	chr8	71307998	71308198	+	753.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	PB1D11|SINE|Alu	35384.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	2.83	3.02	4.56	4.02	8.59	13.48	1.33	9.34	6.49	6.03	6.53	7.83
Merged-chr8-93917370-2	chr8	93917270	93917470	+	753.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	95270.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	10.9	5.28	7.99	11.26	13.5	7.84	16.94	15.08	9.05	14.56	6.03	14.41
Merged-chr7-100208056-3	chr7	100207952	100208152	+	753.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19555.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	13.33	5.03	12.55	6.03	15.55	23.52	8.97	12.28	10.23	12.05	9.04	5.33
Merged-chr2-170205830-3	chr2	170205541	170205741	+	753.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62966.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.62	3.77	4.56	0.4	3.68	7.53	1.0	2.21	4.92	7.53	10.05	5.01
Merged-chr2-167350741-1	chr2	167350641	167350841	+	753.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1563.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.04	8.8	9.7	16.49	7.36	10.98	6.98	7.79	14.36	8.03	17.08	6.89
Merged-chr13-97197049-1	chr13	97196949	97197149	+	753.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	1308.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	2.02	2.26	1.71	4.02	7.36	5.64	7.97	8.05	5.31	8.03	4.52	1.25
Merged-chr6-51168244-1	chr6	51168144	51168344	+	753.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101666.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	3.63	4.02	3.42	4.02	4.09	3.45	3.99	3.0	13.77	12.55	16.08	9.71
Merged-chr10-120233782-1	chr10	120233682	120233882	+	753.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	6722.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.06	2.01	6.85	0.8	0.41	0.0	1.33	4.01	17.11	18.08	3.52	10.96
Merged-chr16-38455525-3	chr16	38455447	38455647	+	753.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2858.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	11.71	13.08	6.28	4.83	9.82	14.11	7.31	9.08	10.23	7.53	13.06	6.27
Merged-chr12-98777635-2	chr12	98777529	98777729	+	753.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008506, intron 10 of 14)	L2|LINE|L2	6607.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	9.69	8.3	11.41	9.65	7.77	10.35	12.29	10.51	2.56	13.05	8.54	2.19
Merged-chr19-5839737-5	chr19	5839725	5839925	+	753.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	5653.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	13.73	9.06	14.26	4.42	11.05	27.28	4.32	7.35	2.56	5.02	9.55	5.01
Merged-chr10-77903018-3	chr10	77902919	77903119	+	753.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145152)	promoter-TSS (NM_145152)	-483.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	16.15	12.32	8.56	7.64	9.41	9.09	6.64	7.32	10.03	9.04	5.53	10.34
Merged-chr17-34005618-3	chr17	34005530	34005730	+	753.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV-int|LTR|ERVK	-5283.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	18.98	19.62	14.26	11.26	6.95	9.09	7.64	1.79	12.78	7.53	9.55	10.02
Merged-chr4-126301414-3	chr4	126301314	126301514	+	753.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199473, intron 2 of 3)	CpG	14620.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	25.04	10.56	19.4	12.87	11.86	10.98	4.98	4.15	13.77	13.05	16.08	5.64
Merged-chr8-10964933-2	chr8	10964821	10965021	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36464.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	5.25	7.55	17.68	4.83	9.0	6.27	2.33	6.98	3.54	2.01	4.52	0.94
Merged-chr13-45625973-2	chr13	45625870	45626070	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	MIRb|SINE|MIR	118526.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	10.5	7.29	9.7	4.42	18.41	13.17	6.64	8.27	6.1	2.01	9.55	2.82
Merged-chr13-13415616-1	chr13	13415516	13415716	+	753.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21986.0	NM_010917	18073.0	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	6.46	12.32	7.42	4.83	10.64	5.96	7.31	11.1	20.26	8.54	7.03	5.33
Merged-chr6-145863771-1	chr6	145863671	145863871	+	753.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001271768, exon 5 of 5)	3' UTR (NM_001271768, exon 5 of 5)	1649.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.23	1.76	3.42	0.0	6.14	4.08	8.3	13.4	0.59	0.0	3.01	1.88
Merged-chr5-31295765-3	chr5	31295671	31295871	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022424, exon 1 of 7)	5' UTR (NM_022424, exon 1 of 7)	161.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	14.13	8.05	6.85	4.42	4.5	11.92	12.29	8.61	16.72	5.02	9.04	5.95
Merged-chr6-134263554-2	chr6	134263463	134263663	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 8 of 8)	intron (NM_001303102, intron 8 of 8)	-132766.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.27	5.79	10.84	4.02	5.32	11.92	3.32	8.86	14.16	5.52	10.05	2.19
Merged-chr15-58592891-3	chr15	58592827	58593027	+	753.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177459.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.86	6.29	3.42	2.41	6.55	13.17	4.65	5.97	10.82	5.52	14.07	7.52
Merged-chr1-91483467-3	chr1	91483305	91483505	+	753.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11263.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	10.09	2.01	0.0	7.24	6.95	4.39	3.99	7.32	6.49	4.52	8.04	2.19
Merged-chr10-41518008-3	chr10	41517891	41518091	+	753.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-1509.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	10.09	7.8	11.41	3.62	15.14	10.03	7.64	8.44	12.19	6.03	10.55	4.7
Merged-chr11-59180875-3	chr11	59180762	59180962	+	753.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080454, intron 1 of 1)	L1MD3|LINE|L1	1964.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	9.29	5.53	12.55	7.64	6.95	8.15	3.65	7.71	10.03	6.03	12.56	8.14
Merged-chr2-128428717-3	chr2	128428622	128428822	+	753.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	629.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	7.27	10.56	11.41	8.04	13.09	16.93	6.98	8.41	9.05	12.55	15.07	8.77
Merged-chr6-136811540-3	chr6	136811445	136811645	+	753.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3297.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.85	8.55	18.83	9.25	8.18	2.82	1.99	6.03	17.9	15.57	25.63	13.78
Merged-chr9-4380775-2	chr9	4380693	4380893	+	753.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145609, intron 1 of 2)	intron (NM_145609, intron 1 of 2)	4241.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	3.23	2.01	9.13	5.23	7.36	8.15	16.28	17.97	11.41	9.04	12.06	8.77
Merged-chr11-58588206-2	chr11	58588075	58588275	+	753.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7338.0	NM_207153	258261.0	Mm.303171	NM_207153	ENSMUSG00000060765	Olfr325	MOR275-5	olfactory receptor 325	protein-coding	9.69	7.55	5.7	5.23	10.23	16.93	3.99	5.94	0.0	0.0	1.0	1.25
Merged-chr2-6722122-2	chr2	6722011	6722211	+	753.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-449.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	7.27	3.27	7.99	8.04	9.0	2.51	5.98	7.23	8.46	3.51	16.08	11.28
Merged-chr6-17640951-2	chr6	17640861	17641061	+	753.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	3951.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.65	7.04	2.28	5.63	3.68	5.96	6.31	6.93	10.03	5.02	18.59	11.9
Merged-chr12-40431223-2	chr12	40431106	40431306	+	753.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	14584.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	11.71	11.32	10.84	10.86	2.86	9.41	9.63	10.32	18.49	10.54	11.56	8.77
Merged-chr2-90486579-2	chr2	90486473	90486673	+	753.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-7399.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.85	3.27	12.55	4.02	6.14	12.54	7.31	16.54	6.49	5.52	14.57	8.14
Merged-chr19-37284973-3	chr19	37284874	37285074	+	753.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031156, intron 17 of 23)	intron (NM_031156, intron 17 of 23)	-20879.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	4.04	2.52	16.54	10.05	8.18	5.02	8.97	14.02	9.64	7.53	12.06	3.76
Merged-chr7-25084805-3	chr7	25084698	25084898	+	753.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7991.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	9.69	10.82	8.56	2.41	3.27	15.99	7.31	7.32	11.8	6.53	11.05	7.21
Merged-chr7-72261023-2	chr7	72260944	72261144	+	753.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 1 of 22)	Lx7|LINE|L1	45551.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	6.46	5.53	2.28	10.86	14.73	3.76	7.31	9.45	1.97	1.0	1.51	2.51
Merged-chr15-25365647-2	chr15	25365546	25365746	+	753.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48118.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.85	1.26	2.28	7.24	13.5	10.98	9.63	10.04	14.75	8.03	16.58	8.77
Merged-chr11-85170242-3	chr11	85170132	85170332	+	753.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028589)	promoter-TSS (NM_028589)	-864.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	5.65	5.53	13.69	7.24	6.95	5.96	4.65	5.27	14.75	6.53	23.11	11.59
Merged-chr16-30733097-3	chr16	30733003	30733203	+	753.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	133380.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	10.09	7.55	5.7	9.65	7.77	10.35	1.66	8.97	13.96	9.54	15.07	14.41
Merged-chr9-109056793-4	chr9	109056773	109056973	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026381, exon 4 of 4)	3' UTR (NM_026381, exon 4 of 4)	2007.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	10.09	8.05	5.7	0.8	2.05	3.45	3.65	1.85	6.29	9.04	4.02	6.27
Merged-chr4-119968003-1	chr4	119967903	119968103	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	B4|SINE|B4	153325.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	1.76	3.42	3.22	10.23	0.94	1.66	6.93	4.33	3.51	6.53	5.95
Merged-chr16-33793392-1	chr16	33793292	33793492	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010739)	promoter-TSS (NM_010739)	-645.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	2.42	3.77	2.28	9.65	10.23	5.33	2.33	8.75	4.13	4.02	6.53	6.27
Merged-chr19-21407836-1	chr19	21407736	21407936	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 10 of 13)	MTD|LTR|ERVL-MaLR	64825.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.83	0.0	0.0	0.0	1.64	2.82	7.31	4.88	1.18	1.51	1.0	0.63
Merged-chr10-98778504-2	chr10	98778409	98778609	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136133.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.85	5.79	6.85	4.42	12.27	10.98	3.65	11.69	11.01	11.05	11.05	4.39
Merged-chr5-23419438-1	chr5	23419338	23419538	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14915.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.44	5.03	5.7	4.02	3.27	3.76	6.64	3.11	6.49	9.04	8.04	5.64
Merged-chr7-42693511-1	chr7	42693411	42693611	+	753.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-793.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	1.62	6.04	2.28	7.64	9.41	0.94	7.64	3.36	12.59	3.51	3.52	7.83
Merged-chr12-8537326-1	chr12	8537226	8537426	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001286385)	TTS (NM_001286385)	2240.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.23	7.04	3.42	3.22	7.77	10.03	3.32	6.11	6.49	7.53	10.55	6.27
Merged-chr9-69557269-1	chr9	69557169	69557369	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100325.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.0	3.77	5.7	0.8	2.45	1.88	5.65	8.66	7.67	3.51	1.0	0.63
Merged-chr6-131290631-3	chr6	131290536	131290736	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025564, intron 1 of 4)	B2_Mm2|SINE|B2	2608.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	8.08	4.78	5.7	6.84	6.14	10.35	3.99	6.39	15.74	10.04	31.66	11.28
Merged-chr18-23805058-1	chr18	23804958	23805158	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1088.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.04	6.29	9.13	4.83	4.09	6.9	5.65	6.95	5.31	12.55	4.52	5.95
Merged-chr1-182907489-1	chr1	182907389	182907589	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47299.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	9.29	0.5	7.99	2.01	7.77	1.57	2.66	13.09	3.93	9.54	5.02	10.96
Merged-chr13-29838882-1	chr13	29838782	29838982	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308486, intron 4 of 5)	intron (NM_001308486, intron 4 of 5)	16791.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	2.42	4.53	6.85	11.26	6.55	8.15	0.66	9.11	9.44	7.53	8.04	5.01
Merged-chr4-153835039-1	chr4	153834939	153835139	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	115437.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	1.51	2.28	4.02	6.55	0.0	4.32	11.3	0.0	1.0	0.0	0.94
Merged-chr8-79324240-1	chr8	79324140	79324340	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29162.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	8.48	2.52	0.57	8.04	6.95	1.57	3.65	7.91	3.54	4.02	3.52	3.76
Merged-chr9-69290477-1	chr9	69290377	69290577	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289916, intron 1 of 9)	CpG	636.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	5.65	4.02	3.99	6.44	6.95	5.64	7.97	6.9	3.15	1.51	2.01	3.13
Merged-chr11-70632959-1	chr11	70632859	70633059	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-6163.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.4	2.52	7.99	7.64	8.18	6.27	12.95	7.43	7.87	5.52	3.52	4.7
Merged-chr12-75634011-1	chr12	75633911	75634111	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	RMER10B|LTR|ERVL	-2262.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	3.63	2.01	6.85	0.8	0.41	2.51	5.65	2.07	1.97	2.51	14.57	5.33
Merged-chr13-20181537-1	chr13	20181437	20181637	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91030.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.25	2.77	4.56	6.44	13.09	13.8	3.32	7.32	4.13	14.56	8.04	6.27
Merged-chr18-60681071-3	chr18	60680963	60681163	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17653.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	6.86	13.58	6.85	9.65	8.18	18.5	1.33	8.58	7.08	14.56	15.58	10.02
Merged-chr15-87083169-1	chr15	87083069	87083269	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-461130.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.0	0.0	0.0	0.8	3.68	1.25	6.64	7.32	0.0	1.51	0.0	0.94
Merged-chr12-69437329-1	chr12	69437229	69437429	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38221.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.04	2.01	0.0	0.4	4.5	10.35	2.66	5.83	0.79	2.51	2.01	0.63
Merged-chr11-3127945-2	chr11	3127835	3128035	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	3914.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	6.46	9.56	3.99	7.24	12.27	11.6	8.3	9.93	0.59	0.0	0.0	0.31
Merged-chr12-91877814-1	chr12	91877714	91877914	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28657.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	4.85	4.53	0.0	4.02	4.5	6.27	6.98	7.01	12.78	4.52	1.0	4.7
Merged-chr15-97651464-1	chr15	97651364	97651564	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	54358.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	3.27	0.63	6.64	6.39	1.18	0.5	4.02	0.94
Merged-chr16-50364384-1	chr16	50364284	50364484	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	68005.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	6.06	4.53	3.42	5.63	2.05	5.96	6.31	7.12	4.72	2.51	7.54	6.89
Merged-chr10-83152358-2	chr10	83152270	83152470	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	166873.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.04	6.29	1.71	3.22	5.73	18.81	9.97	5.33	4.92	10.54	14.57	3.76
Merged-chr18-89597259-1	chr18	89597159	89597359	+	753.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039173, intron 2 of 7)	Lx2|LINE|L1	171877.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	4.85	3.52	7.99	5.63	4.09	6.9	5.31	1.93	8.26	3.51	16.58	12.53
Merged-chr11-100983710-1	chr11	100983610	100983810	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13093.0	NM_008986	19285.0	Mm.21864	NM_008986	ENSMUSG00000004044	Cavin1	2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf	caveolae associated 1	protein-coding	1.62	3.77	0.0	3.62	1.64	6.9	0.0	5.72	4.33	1.51	3.52	4.07
Merged-chr19-25628704-1	chr19	25628604	25628804	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18167.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	2.02	1.26	3.99	0.8	5.32	8.47	2.33	6.81	8.26	9.04	7.03	8.46
Merged-chr10-83301839-1	chr10	83301739	83301939	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177388, intron 4 of 10)	intron (NM_177388, intron 4 of 10)	35978.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.04	3.27	6.85	3.62	9.0	6.27	6.64	6.84	1.38	3.01	9.04	2.82
Merged-chr1-150374827-1	chr1	150374727	150374927	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145511, exon 11 of 14)	exon (NM_145511, exon 11 of 14)	-18011.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	2.02	1.26	2.85	5.23	7.77	3.76	6.64	10.79	0.0	0.0	0.0	0.63
Merged-chr2-153225148-3	chr2	153225068	153225268	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198617, exon 1 of 1)	exon (NM_198617, exon 1 of 1)	273.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	4.44	4.78	10.27	9.65	8.18	7.53	4.65	6.93	13.57	14.56	13.06	7.21
Merged-chr1-74948931-1	chr1	74948831	74949031	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010544, intron 1 of 2)	intron (NM_010544, intron 1 of 2)	2741.0	NM_001313683	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	2.42	1.26	9.7	2.82	0.41	4.7	0.66	5.64	2.95	1.0	5.53	1.57
Merged-chr16-44123512-2	chr16	44123423	44123623	+	752.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	15736.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	4.85	9.31	1.71	3.22	7.36	9.72	7.64	7.51	17.9	12.55	12.06	2.82
Merged-chr7-45561432-3	chr7	45561336	45561536	+	752.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025330, intron 5 of 8)	B3|SINE|B2	6508.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	17.36	2.77	10.27	8.04	8.59	9.41	2.66	9.17	14.95	14.56	12.56	12.53
Merged-chr6-145320347-2	chr6	145320252	145320452	+	752.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67273.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	9.29	5.28	10.27	8.85	14.32	10.35	12.29	10.63	0.79	0.0	0.0	0.31
Merged-chr13-44305356-3	chr13	44305235	44305435	+	752.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88848.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	5.25	8.3	10.84	13.27	16.77	14.11	7.64	12.31	5.51	13.05	22.11	5.33
Merged-chr4-134526405-3	chr4	134526304	134526504	+	752.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029759, exon 7 of 7)	3' UTR (NM_029759, exon 7 of 7)	8692.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	13.33	7.8	10.27	9.25	3.27	8.78	5.31	5.61	7.87	10.04	17.59	14.1
Merged-chr5-104042879-3	chr5	104042790	104042990	+	752.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3974.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	6.86	8.3	5.13	10.05	14.73	11.29	2.99	10.09	10.82	18.58	15.07	9.08
Merged-chr18-5101043-2	chr18	5100942	5101142	+	752.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	54453.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	5.65	3.77	3.99	10.05	6.95	21.01	10.96	22.82	3.93	8.03	8.54	4.7
Merged-chr1-131990613-3	chr1	131990528	131990728	+	752.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16977.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	14.94	12.07	9.7	8.45	6.95	13.8	7.97	15.76	13.18	12.05	6.03	4.07
Merged-chr1-161550870-2	chr1	161550774	161550974	+	752.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56217.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.0	0.5	0.57	2.82	7.77	2.82	9.63	6.31	5.7	4.02	15.07	9.08
Merged-chr6-38695564-2	chr6	38695446	38695646	+	752.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32477.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.44	6.54	3.99	4.42	5.73	14.74	3.32	7.01	10.82	12.55	10.05	12.84
Merged-chr4-3742639-2	chr4	3742549	3742749	+	752.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 3 of 12)	L1MB3|LINE|L1	27685.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	4.04	3.77	5.7	2.41	14.73	10.35	7.31	9.62	11.21	14.56	11.56	4.7
Merged-chr7-84150860-3	chr7	84150763	84150963	+	752.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	1030.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	6.06	6.04	1.71	9.65	8.18	10.35	7.64	6.79	9.44	11.05	8.04	14.72
Merged-chr19-10844694-3	chr19	10844475	10844675	+	752.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	2031.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	3.63	7.55	9.7	3.22	5.73	3.45	2.33	4.71	1.97	5.52	4.02	5.64
Merged-chr18-70532251-3	chr18	70532128	70532328	+	752.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1907.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	8.08	7.04	13.69	10.86	5.32	4.39	6.98	9.48	21.64	26.61	9.55	6.27
Merged-chr8-94089890-3	chr8	94089816	94090016	+	752.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026116, intron 2 of 16)	intron (NM_026116, intron 2 of 16)	8895.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	11.31	8.55	15.97	12.47	8.18	6.59	5.65	15.08	9.83	3.51	9.04	6.89
Merged-chr6-99804404-3	chr6	99804276	99804476	+	752.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77984.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	11.71	9.81	13.69	11.66	16.36	9.41	3.32	12.67	8.65	6.53	11.05	6.27
Merged-chr4-7313407-2	chr4	7313302	7313502	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-247286.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	6.06	2.77	11.98	10.05	11.05	3.76	4.65	11.38	2.36	5.02	15.58	5.01
Merged-chr10-20040342-2	chr10	20040228	20040428	+	752.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	105802.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.63	4.28	8.56	16.09	11.86	11.6	11.96	15.81	7.87	13.56	10.55	4.39
Merged-chr5-95941901-2	chr5	95941794	95941994	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15045.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	7.67	3.52	11.98	3.62	14.32	7.53	2.33	7.65	5.7	4.52	6.53	3.13
Merged-chr10-111100247-3	chr10	111100172	111100372	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64530.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	7.27	7.29	16.54	8.04	5.32	10.66	7.31	13.12	16.72	11.55	12.56	10.96
Merged-chr1-151963593-2	chr1	151963503	151963703	+	752.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	126717.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	6.46	5.03	8.56	15.69	11.45	3.76	4.65	9.08	9.24	7.03	10.55	2.51
Merged-chr6-54760315-2	chr6	54760193	54760393	+	752.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56623.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.44	5.53	5.7	1.61	4.09	9.09	6.64	7.18	8.65	4.02	10.05	8.77
Merged-chr7-19281903-2	chr7	19281800	19282000	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-724.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	14.94	8.55	8.56	6.44	9.0	14.11	3.32	4.15	16.52	23.1	14.07	21.62
Merged-chr3-95142388-3	chr3	95142254	95142454	+	752.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	6.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	9.29	8.05	7.99	8.45	8.59	15.99	1.99	8.02	8.65	9.54	18.09	7.21
Merged-chr5-125271691-3	chr5	125271590	125271790	+	752.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69404.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	8.08	1.51	3.42	9.65	5.73	10.03	2.33	8.24	14.75	7.53	15.58	8.46
Merged-chr11-68623638-3	chr11	68623538	68623738	+	752.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36601.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	8.88	11.07	7.42	6.03	9.0	9.09	2.99	6.39	8.46	15.06	12.56	18.17
Merged-chr8-119347666-2	chr8	119347572	119347772	+	752.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024219, intron 3 of 3)	intron (NM_024219, intron 3 of 3)	3134.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	10.09	5.79	6.85	11.26	14.73	10.03	2.33	10.74	6.29	4.52	11.05	5.95
Merged-chr12-98238663-3	chr12	98238574	98238774	+	752.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008079, intron 7 of 16)	MTC|LTR|ERVL-MaLR	20785.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	9.29	4.53	9.7	11.26	11.05	3.14	9.63	8.38	8.85	8.54	20.6	7.21
Merged-chr4-153922611-1	chr4	153922511	153922711	+	752.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27865.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	4.04	1.01	0.0	1.61	9.41	8.15	2.33	7.57	2.56	0.0	1.0	3.13
Merged-chr4-43052847-3	chr4	43052766	43052966	+	752.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6087.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	4.44	11.32	9.13	4.02	4.91	8.15	2.99	6.2	16.52	8.03	13.57	8.77
Merged-chr15-64382703-1	chr15	64382603	64382803	+	752.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 1 of 28)	CpG	216.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	20.19	7.04	6.85	3.22	6.14	5.33	6.98	12.17	7.28	5.02	6.53	9.08
Merged-chr6-84796491-1	chr6	84796391	84796591	+	752.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 18 of 21)	intron (NM_177077, intron 18 of 21)	-202583.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.44	3.27	1.71	2.41	6.14	9.09	5.31	8.02	1.77	3.01	7.03	0.94
Merged-chr17-3092967-2	chr17	3092869	3093069	+	752.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8786.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	7.67	3.02	2.28	3.22	11.86	15.68	8.64	12.17	13.96	8.54	22.61	9.71
Merged-chr6-52479392-3	chr6	52479312	52479512	+	752.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13039.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	10.09	11.82	11.41	8.45	11.05	7.53	10.96	9.95	12.98	23.6	14.07	9.71
Merged-chr5-97962031-2	chr5	97961928	97962128	+	752.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133738, intron 11 of 16)	intron (NM_133738, intron 11 of 16)	68934.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	4.85	5.79	2.85	11.66	7.77	11.6	14.28	14.36	2.56	2.01	8.04	4.39
Merged-chr10-120197766-2	chr10	120197665	120197865	+	752.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	3832.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	8.08	2.77	2.28	4.83	5.73	10.35	7.97	6.9	12.59	11.55	20.1	6.89
Merged-chr19-25622697-3	chr19	25622608	25622808	+	752.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177360, exon 2 of 2)	exon (NM_177360, exon 2 of 2)	12171.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	11.31	6.54	5.7	6.84	2.05	10.35	7.97	10.6	7.67	14.06	9.04	12.84
Merged-chr5-120167862-3	chr5	120167772	120167972	+	752.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-28609.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	10.5	4.78	7.99	14.88	11.05	21.64	10.3	4.09	8.26	11.55	7.54	6.58
Merged-chr6-47319769-1	chr6	47319669	47319869	+	752.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75373.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	10.09	7.04	9.7	4.02	9.0	7.53	10.96	7.68	7.67	4.52	6.03	5.64
Merged-chr16-56715754-2	chr16	56715659	56715859	+	752.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357126, intron 1 of 8)	intron (NM_001357126, intron 1 of 8)	1691.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	5.25	5.79	6.85	2.41	15.96	9.72	9.3	10.37	11.01	9.04	11.56	5.33
Merged-chr7-30000805-2	chr7	30000695	30000895	+	752.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	16840.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	8.48	8.55	0.57	13.27	7.77	15.05	6.64	17.1	7.47	4.52	5.53	3.76
Merged-chr9-40805457-3	chr9	40805373	40805573	+	752.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_031165)	TTS (NM_031165)	4200.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.67	7.29	15.4	6.84	11.45	7.53	7.97	6.73	15.93	17.07	16.08	7.83
Merged-chr19-18608069-1	chr19	18607969	18608169	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23744.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	9.69	4.53	9.7	2.41	4.91	8.15	4.98	7.91	3.74	4.02	5.02	0.31
Merged-chr10-128238284-1	chr10	128238184	128238384	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011589, intron 1 of 28)	intron (NM_011589, intron 1 of 28)	218.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	4.04	8.05	0.0	6.03	5.73	13.17	3.99	5.97	6.49	16.07	7.03	5.33
Merged-chrX-167233513-2	chrX	167233345	167233545	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24227.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	4.85	2.77	5.7	0.8	5.32	1.25	6.31	3.28	4.33	5.52	3.01	2.82
Merged-chr3-86812888-1	chr3	86812788	86812988	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195500, intron 8 of 11)	intron (NM_001195500, intron 8 of 11)	107996.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.65	4.78	3.99	7.24	10.64	5.96	2.99	7.09	6.69	4.52	9.04	7.21
Merged-chr9-90408898-1	chr9	90408798	90408998	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-138129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.62	0.25	1.14	2.82	7.77	2.51	4.98	6.93	3.34	2.01	2.01	2.82
Merged-chr4-145013486-1	chr4	145013386	145013586	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	120349.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.06	5.03	6.85	9.65	5.32	5.33	4.98	11.41	2.75	3.01	2.51	5.01
Merged-chr11-119952633-2	chr11	119952532	119952732	+	752.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	9540.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	2.02	7.8	2.28	8.85	2.45	1.88	5.31	11.3	5.51	5.52	4.02	3.76
Merged-chr11-79368430-1	chr11	79368330	79368530	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010897, intron 1 of 57)	MLT-int|LTR|ERVL-MaLR	28538.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	1.62	0.5	4.56	5.63	10.23	5.64	1.33	7.01	5.11	5.02	12.06	3.45
Merged-chr6-124932101-2	chr6	124932003	124932203	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001170341, exon 2 of 9)	5' UTR (NM_001170341, exon 2 of 9)	715.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	7.67	2.77	9.7	4.42	6.14	7.21	7.97	6.2	9.24	6.53	7.54	8.46
Merged-chr12-73633871-1	chr12	73633771	73633971	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	L1MC3|LINE|L1	49075.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	8.08	0.0	6.28	7.24	9.41	6.9	1.66	8.83	5.31	2.01	5.53	9.08
Merged-chr11-59964989-1	chr11	59964889	59965089	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-45.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	11.31	5.53	4.56	5.63	5.32	8.15	3.99	8.02	3.54	2.01	3.52	7.52
Merged-chr14-57397787-1	chr14	57397687	57397887	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	696.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	1.62	3.02	5.7	8.45	6.55	10.35	1.33	9.87	2.36	5.02	3.52	3.45
Merged-chr8-47940003-3	chr8	47939914	47940114	+	752.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	50537.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	12.11	7.04	9.7	15.69	8.59	11.29	9.3	17.22	9.44	5.52	7.54	12.53
Merged-chr8-25602705-2	chr8	25602615	25602815	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001308482, exon 1 of 8)	5' UTR (NM_001308482, exon 1 of 8)	431.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	1.62	3.02	2.28	3.62	4.91	7.21	3.32	6.95	10.03	6.53	10.55	9.08
Merged-chr15-58976658-3	chr15	58976546	58976746	+	752.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	42836.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	11.31	7.29	9.7	8.85	16.77	21.32	10.63	17.94	8.46	9.04	18.09	6.27
Merged-chr7-144907220-3	chr7	144907120	144907320	+	752.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7880.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	13.33	12.07	4.56	5.63	11.05	10.66	4.32	9.76	14.75	11.55	14.07	5.95
Merged-chr14-30325218-2	chr14	30325107	30325307	+	752.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	MLT1K|LTR|ERVL-MaLR	28279.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	7.67	6.54	15.4	9.25	13.09	8.47	4.98	12.25	12.78	11.05	11.56	7.83
Merged-chr15-89181908-3	chr15	89181754	89181954	+	752.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027081)	TTS (NM_027081)	-1066.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	4.44	9.56	3.99	3.22	6.95	10.66	5.31	5.72	10.42	8.54	2.51	7.52
Merged-chr14-36867159-3	chr14	36867056	36867256	+	752.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52379.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	10.5	5.03	6.85	12.07	12.68	17.56	9.97	16.57	12.19	21.59	15.58	7.52
Merged-chr7-59977611-3	chr7	59977516	59977716	+	752.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_146211, intron 17 of 171)	(A)n|Simple_repeat|Simple_repeat	1240.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	6.46	7.55	19.4	12.07	9.82	5.02	14.28	9.98	9.05	2.01	15.07	5.01
Merged-chr2-91182411-4	chr2	91182282	91182482	+	752.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177719, intron 1 of 34)	intron (NM_001177719, intron 1 of 34)	665.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	3.23	2.26	7.99	2.82	6.95	2.51	13.62	6.84	9.64	5.52	5.53	5.33
Merged-chr19-47127262-2	chr19	47127155	47127355	+	752.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011053, exon 30 of 36)	exon (NM_011053, exon 30 of 36)	11039.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	7.67	7.55	6.85	15.28	7.77	4.7	14.62	13.65	13.77	5.02	20.6	4.07
Merged-chr5-122811892-2	chr5	122811790	122811990	+	752.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042491, intron 5 of 16)	B3|SINE|B2	9452.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	4.04	5.53	6.28	2.41	7.36	16.62	4.98	4.46	12.0	16.57	19.6	7.21
Merged-chr18-11844212-2	chr18	11844104	11844304	+	752.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-3766.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	9.69	5.03	6.28	10.05	11.05	12.23	10.96	11.58	3.74	3.51	2.01	3.76
Merged-chr3-135579255-2	chr3	135579129	135579329	+	752.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	93618.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	1.62	4.02	3.42	7.64	1.23	5.64	3.99	2.61	0.98	1.0	0.0	0.0
Merged-chr14-17633070-2	chr14	17632948	17633148	+	752.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27912.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.63	4.28	7.99	3.62	11.45	13.8	6.64	16.23	11.6	5.02	9.55	5.33
Merged-chr11-80378047-3	chr11	80377930	80378130	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027472)	promoter-TSS (NM_027472)	-15.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	13.73	4.78	5.13	2.82	9.82	10.98	2.66	3.81	9.44	16.07	7.03	6.27
Merged-chr7-97748324-3	chr7	97748243	97748443	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10096.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	16.15	11.32	13.12	4.42	6.55	12.86	11.29	4.77	12.59	8.54	5.02	6.27
Merged-chr18-67167184-1	chr18	67167084	67167284	+	752.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	33624.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	1.62	3.02	4.56	1.61	13.5	2.2	6.98	6.84	0.0	1.0	0.0	0.0
Merged-chr7-80055988-3	chr7	80055873	80056073	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19284.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	9.29	10.06	6.28	10.46	10.23	6.9	6.31	11.3	4.13	5.02	7.03	3.13
Merged-chr2-109932344-1	chr2	109932244	109932444	+	752.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	14697.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.4	6.79	0.0	7.24	6.95	7.53	3.32	5.89	2.36	6.03	2.01	5.64
Merged-chr7-49004497-1	chr7	49004397	49004597	+	752.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	45424.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.81	1.51	5.13	7.24	9.0	5.33	7.97	12.45	7.67	2.51	14.07	3.76
Merged-chr14-93697893-3	chr14	93697791	93697991	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	192778.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	9.69	1.26	18.25	4.02	10.64	10.66	20.26	26.1	8.26	11.05	5.53	0.94
Merged-chr6-72758809-3	chr6	72758707	72758907	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	ORR1D2-int|LTR|ERVL-MaLR	30238.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	8.08	6.04	19.4	26.14	4.5	8.78	6.64	13.12	12.39	10.04	22.61	8.46
Merged-chr6-34511596-1	chr6	34511496	34511696	+	752.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35240.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	5.25	5.53	4.56	9.25	3.27	5.33	1.33	6.42	15.34	12.55	12.06	10.96
Merged-chr8-11006469-2	chr8	11006346	11006546	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1404.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.83	3.02	7.99	7.64	6.14	10.98	9.3	10.96	3.93	3.51	2.01	3.45
Merged-chr11-97229614-1	chr11	97229514	97229714	+	752.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008942, intron 14 of 22)	intron (NM_008942, intron 14 of 22)	-41722.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.8	2.45	0.0	0.0	0.56	22.82	13.05	9.04	8.46
Merged-chrX-36127810-3	chrX	36127723	36127923	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 2 of 10)	intron (NM_133990, intron 2 of 10)	15715.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	7.67	10.56	12.55	0.8	7.36	12.54	2.33	5.47	17.7	13.56	5.53	2.19
Merged-chr2-9878615-2	chr2	9878516	9878716	+	752.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-16.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	6.06	4.53	6.85	4.83	9.41	8.15	8.64	6.81	8.46	5.02	7.03	7.52
Merged-chr2-19120130-3	chr2	19120050	19120250	+	752.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78968.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	6.86	4.78	2.28	11.26	15.55	8.78	6.31	11.92	13.18	21.59	15.07	10.02
Merged-chr1-53820283-2	chr1	53820177	53820377	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-29147.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.85	3.52	5.7	10.86	6.95	7.84	6.64	10.77	5.7	7.03	10.05	4.7
Merged-chrY-1244960-2	chrY	1244858	1245058	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009484, intron 2 of 26)	intron (NM_009484, intron 2 of 26)	801.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	7.67	2.52	10.27	4.42	10.23	6.59	11.29	8.72	14.36	5.52	10.55	8.14
Merged-chr18-12927576-2	chr18	12927437	12927637	+	752.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	14304.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	8.08	8.8	9.13	8.85	6.14	7.84	8.3	10.51	3.54	5.02	9.04	5.95
Merged-chr11-94074554-2	chr11	94074442	94074642	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025430, intron 5 of 25)	Lx8|LINE|L1	30337.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	4.91	1.25	7.31	8.16	7.47	2.51	9.55	10.65
Merged-chr4-136878833-2	chr4	136878719	136878919	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	7358.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	1.21	7.04	2.28	2.41	9.41	13.17	7.97	7.26	15.74	7.03	11.05	6.27
Merged-chr6-113751304-3	chr6	113751170	113751370	+	752.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-10589.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	14.94	6.29	11.41	9.25	15.96	5.64	9.97	8.36	9.64	3.51	11.05	7.52
Merged-chr16-24902576-3	chr16	24902481	24902681	+	752.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-157058.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	13.73	4.53	21.11	9.65	6.55	15.99	12.95	31.88	8.65	2.51	12.06	1.88
Merged-chr11-102456171-3	chr11	102456038	102456238	+	752.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010575, intron 27 of 29)	intron (NM_010575, intron 27 of 29)	-8475.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	12.52	8.05	3.42	7.24	15.14	16.93	3.99	10.4	6.49	9.54	8.04	3.45
Merged-chr15-64098237-3	chr15	64098126	64098326	+	752.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-37778.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.06	3.02	10.84	12.47	11.45	10.98	14.28	16.09	8.85	2.51	7.03	12.84
Merged-chr15-101155225-3	chr15	101155132	101155332	+	752.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-18840.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	2.83	5.28	7.99	0.8	9.82	11.92	10.3	2.24	6.1	11.05	4.52	2.19
Merged-chr13-60658332-2	chr13	60658273	60658473	+	752.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	L1_Mus1|LINE|L1	56162.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.46	2.77	3.42	8.85	6.55	5.64	6.31	0.9	8.06	2.51	13.57	4.39
Merged-chr11-83615694-2	chr11	83615594	83615794	+	752.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-22607.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	3.23	2.52	4.56	2.41	2.45	12.54	8.3	9.22	5.7	10.54	16.58	6.89
Merged-chr4-56262229-3	chr4	56262151	56262351	+	752.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	479174.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	10.09	9.31	19.4	9.65	1.23	8.15	2.66	11.83	12.78	12.55	17.08	8.77
Merged-chr8-71528842-2	chr8	71528737	71528937	+	752.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8600.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	6.46	8.3	11.98	7.24	4.09	2.51	0.0	6.67	8.85	6.03	17.08	6.27
Merged-chr4-95047252-4	chr4	95047133	95047333	+	752.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.27	2.01	6.28	8.45	6.95	17.25	3.99	6.53	8.85	6.03	3.01	6.89
Merged-chr5-96206903-3	chr5	96206805	96207005	+	752.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3210.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	13.33	11.07	13.69	0.8	11.86	5.64	7.64	11.19	9.44	8.54	2.01	9.08
Merged-chr18-56523756-2	chr18	56523651	56523851	+	752.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14388.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	8.88	8.55	5.7	7.24	8.18	10.66	10.96	10.4	4.72	5.52	12.56	3.45
Merged-chr2-158107451-2	chr2	158107352	158107552	+	752.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15655.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	2.83	5.03	3.42	5.23	7.77	4.39	7.97	6.48	10.23	8.54	14.07	9.08
Merged-chr1-133613851-3	chr1	133613753	133613953	+	752.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER96|DNA|hAT-Tip100	-3573.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	6.46	8.3	7.99	10.86	6.95	4.7	5.98	7.07	6.69	6.03	15.58	10.02
Merged-chr19-41797019-1	chr19	41796919	41797119	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027667, intron 1 of 11)	intron (NM_027667, intron 1 of 11)	5065.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	2.42	7.55	0.0	2.41	4.5	3.14	5.65	6.28	3.34	2.01	4.52	3.13
Merged-chr3-113630932-2	chr3	113630819	113631019	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026043)	promoter-TSS (NM_026043)	-770.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	2.83	6.54	3.99	6.03	2.45	4.39	3.32	9.95	6.88	8.54	5.02	5.95
Merged-chr17-32809979-1	chr17	32809879	32810079	+	752.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-48.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.81	2.52	1.14	4.83	0.0	2.2	0.0	1.65	11.01	4.52	14.07	8.77
Merged-chr9-47899967-1	chr9	47899867	47900067	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-81759.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.81	3.02	3.99	2.41	1.23	6.59	1.0	0.64	0.98	0.0	0.0	0.0
Merged-chr1-191069437-1	chr1	191069337	191069537	+	752.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	6416.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	2.83	4.78	4.56	1.61	1.23	5.02	2.66	3.31	12.19	10.54	6.03	5.33
Merged-chr6-38610350-2	chr6	38610241	38610441	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_138680)	TTS (NM_138680)	26898.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	12.92	5.28	10.84	8.85	5.73	1.88	6.31	14.16	6.49	4.02	8.54	2.82
Merged-chr13-75871512-2	chr13	75871415	75871615	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028493, exon 12 of 12)	3' UTR (NM_028493, exon 12 of 12)	31629.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	9.29	16.6	15.4	20.11	11.45	9.41	17.27	7.04	4.52	4.52	5.53	5.33
Merged-chr7-114494219-1	chr7	114494119	114494319	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 2 of 15)	intron (NM_011055, intron 2 of 15)	68753.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.0	4.53	2.28	4.42	12.27	2.51	1.66	7.68	7.47	4.02	4.02	3.45
Merged-chr13-6639782-1	chr13	6639682	6639882	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	B1_Mur3|SINE|Alu	8989.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.23	3.02	9.13	7.64	1.64	9.72	3.32	5.89	11.8	5.02	10.55	4.07
Merged-chr4-63396931-1	chr4	63396831	63397031	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045514, intron 2 of 21)	intron (NM_001045514, intron 2 of 21)	1309.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	1.62	3.52	3.99	3.22	9.0	4.7	3.99	6.56	3.15	3.51	2.51	3.45
Merged-chr13-113426104-1	chr13	113426004	113426204	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76740.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.81	4.02	6.85	5.63	10.23	5.02	1.99	7.54	7.28	5.02	4.02	3.13
Merged-chr14-59441619-1	chr14	59441519	59441719	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	656.0	NM_001360592	69008.0	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	4.04	5.03	8.56	1.21	9.82	2.51	3.32	6.59	3.93	5.52	9.04	3.45
Merged-chr7-81274489-1	chr7	81274389	81274589	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	L1M3|LINE|L1	60685.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.42	5.53	3.99	7.64	4.5	8.78	5.65	5.13	2.36	2.51	4.02	4.7
Merged-chr15-90670263-1	chr15	90670163	90670363	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	B4A|SINE|B4	9125.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	6.06	4.53	4.56	4.83	2.05	2.82	5.65	6.28	3.15	1.0	7.54	2.82
Merged-chr5-92367922-3	chr5	92367826	92368026	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	MTD|LTR|ERVL-MaLR	-4630.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	8.88	6.79	2.28	5.23	6.14	9.09	1.99	6.08	12.39	6.53	5.53	11.59
Merged-chr15-53723873-1	chr15	53723773	53723973	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-109594.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.04	2.77	6.28	10.05	0.82	8.15	5.98	6.0	7.47	2.51	8.04	5.64
Merged-chr10-99581290-3	chr10	99581180	99581380	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27891.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	8.88	5.79	9.7	9.25	21.27	17.25	19.6	27.56	11.6	11.55	22.11	7.21
Merged-chr5-104948107-1	chr5	104948007	104948207	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	34610.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.85	3.27	6.85	2.01	6.55	1.25	5.65	6.14	2.95	0.5	1.0	2.19
Merged-chr1-179398944-1	chr1	179398844	179399044	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	119097.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	2.42	1.51	1.14	3.22	1.64	0.63	6.31	5.72	8.26	1.0	8.54	3.13
Merged-chrX-152001238-1	chrX	152001138	152001338	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016763)	promoter-TSS (NM_016763)	-658.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	6.46	3.52	1.14	4.02	3.27	4.7	7.97	6.28	2.75	2.51	7.54	2.51
Merged-chr4-120027439-1	chr4	120027339	120027539	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-133767.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	2.42	2.52	3.42	0.4	6.14	13.48	8.64	6.62	8.65	1.51	5.02	3.13
Merged-chr4-123591429-2	chr4	123591316	123591516	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	MTC|LTR|ERVL-MaLR	-25004.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	8.88	3.77	6.85	0.0	7.36	1.88	3.99	9.64	10.62	3.01	13.06	6.89
Merged-chr14-55680838-1	chr14	55680738	55680938	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145705, exon 4 of 9)	exon (NM_145705, exon 4 of 9)	979.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	6.46	4.78	10.27	6.44	9.82	12.23	1.99	3.93	6.69	16.07	9.04	4.07
Merged-chr17-73933845-1	chr17	73933745	73933945	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	16351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	2.83	2.26	5.13	0.8	4.09	2.82	5.98	5.89	2.75	2.51	1.51	3.13
Merged-chrX-77638209-1	chrX	77638109	77638309	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020601, intron 2 of 15)	intron (NM_020601, intron 2 of 15)	37243.0	NM_001101585	628893.0	Mm.477437	NM_001101585		Cldn34-ps	EG628893|Gm6927	claudin 34, pseudogene	protein-coding	2.42	2.52	2.28	3.62	4.5	7.53	2.33	7.99	6.88	3.01	2.51	3.13
Merged-chr11-34032343-1	chr11	34032243	34032443	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14585.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.63	5.79	3.99	2.41	6.14	6.59	9.63	6.34	5.9	9.54	9.55	5.95
Merged-chr10-75836229-3	chr10	75836147	75836347	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1366.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	13.73	6.54	11.41	9.25	11.86	6.9	7.97	7.35	12.39	11.05	11.56	10.65
Merged-chr5-121409098-2	chr5	121408968	121409168	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172722, intron 3 of 23)	intron (NM_172722, intron 3 of 23)	11086.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	6.86	5.53	4.56	2.41	9.41	6.27	3.99	5.64	7.08	15.06	6.03	14.1
Merged-chr12-4981542-1	chr12	4981442	4981642	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001362349, intron 17 of 27)	intron (NM_001362349, intron 17 of 27)	64189.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.81	8.05	14.83	0.8	1.64	1.88	1.33	0.9	11.21	2.01	6.03	4.07
Merged-chr8-70703579-2	chr8	70703549	70703749	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5910.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	2.83	10.56	4.56	5.63	6.14	5.96	3.32	3.45	1.97	6.53	4.52	1.57
Merged-chr11-11780001-1	chr11	11779901	11780101	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	28961.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.63	2.26	6.85	2.82	0.0	7.53	1.99	0.62	0.59	3.01	4.02	4.7
Merged-chr14-25371164-1	chr14	25371064	25371264	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88021.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.42	3.27	1.71	2.41	6.55	4.39	4.65	9.59	3.34	3.01	1.0	1.25
Merged-chr4-124234598-3	chr4	124234526	124234726	+	751.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	251333.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	10.5	7.04	14.26	4.83	4.5	9.41	8.3	8.41	9.24	9.04	5.02	4.39
Merged-chr9-44191351-3	chr9	44191253	44191453	+	751.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	42693.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	8.88	8.05	16.54	10.46	9.41	9.09	10.3	10.18	12.0	16.07	6.53	7.52
Merged-chr13-51742975-3	chr13	51742878	51743078	+	751.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	50769.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	9.29	11.32	14.26	4.83	5.73	9.09	17.61	4.71	12.59	5.52	12.56	9.08
Merged-chr16-90316045-3	chr16	90315958	90316158	+	751.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31555.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	7.27	8.05	17.11	5.63	8.18	12.23	4.98	15.53	5.31	15.06	11.56	9.71
Merged-chr13-40952996-3	chr13	40952906	40953106	+	751.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	35372.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	6.86	6.04	13.69	9.65	7.36	18.5	10.63	4.91	31.86	15.06	17.08	7.21
Merged-chr17-30559728-2	chr17	30559622	30559822	+	751.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	16565.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	21.0	18.36	17.11	14.88	4.09	5.02	1.99	3.64	10.23	4.52	8.04	5.01
Merged-chr1-10009185-2	chr1	10009082	10009282	+	751.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110971)	promoter-TSS (NR_110971)	-46.0	NM_145692	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	2.83	3.02	4.56	4.83	6.95	11.29	5.98	9.84	9.83	12.55	13.06	10.96
Merged-chr15-73725436-3	chr15	73725362	73725562	+	751.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166388, exon 1 of 6)	5' UTR (NM_001166388, exon 1 of 6)	532.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.04	8.05	0.57	6.44	7.36	8.78	4.98	4.99	7.47	9.04	16.08	13.16
Merged-chr15-50763571-1	chr15	50763471	50763671	+	751.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	125478.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.25	2.01	6.85	6.84	7.36	7.21	8.64	7.04	2.36	2.51	8.54	1.88
Merged-chr14-55918856-3	chr14	55918751	55918951	+	751.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18619.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	8.08	9.31	11.41	3.62	7.77	7.84	3.99	8.89	14.95	5.02	9.04	13.78
Merged-chr15-103215309-3	chr15	103215211	103215411	+	751.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110216)	promoter-TSS (NM_001110216)	41.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	11.31	6.54	13.12	8.45	15.96	12.54	13.95	3.36	13.37	6.53	8.54	6.89
Merged-chr1-43903026-2	chr1	43902927	43903127	+	751.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30967.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	4.85	10.56	13.12	7.24	6.14	7.53	6.64	5.07	5.11	8.03	4.02	2.19
Merged-chr5-111125011-2	chr5	111124926	111125126	+	751.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	120882.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	23.82	2.77	11.41	8.04	9.41	5.02	2.66	13.85	4.92	3.01	6.53	8.46
Merged-chr19-3923874-2	chr19	3923783	3923983	+	751.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026316, exon 2 of 10)	exon (NM_026316, exon 2 of 10)	5833.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	8.48	6.79	0.0	6.44	6.55	2.2	8.64	7.77	3.54	2.01	2.51	5.64
Merged-chr4-3760603-2	chr4	3760504	3760704	+	751.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	45640.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.42	2.52	0.0	0.8	10.64	3.76	13.62	9.93	15.14	13.56	6.53	8.46
Merged-chr10-34267891-1	chr10	34267791	34267991	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14299.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	2.83	3.77	10.27	7.24	10.23	7.53	4.32	6.5	6.49	5.02	7.54	3.76
Merged-chr5-114926324-3	chr5	114926216	114926416	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3076.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	8.08	13.08	12.55	1.61	4.5	13.48	3.32	7.18	18.1	11.05	4.02	2.51
Merged-chr2-90496489-1	chr2	90496389	90496589	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17315.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.65	3.77	4.56	2.41	7.36	12.54	3.65	6.98	8.06	7.53	13.06	2.82
Merged-chr4-107802052-1	chr4	107801952	107802152	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033496)	promoter-TSS (NR_033496)	-207.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	3.23	10.82	3.42	6.84	5.32	2.51	3.65	6.9	6.49	2.01	5.53	5.64
Merged-chr6-4973538-3	chr6	4973434	4973634	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	70214.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	12.11	9.56	11.98	11.66	22.91	11.6	7.97	15.95	9.64	8.54	7.54	7.52
Merged-chr19-16373301-3	chr19	16373310	16373510	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-58406.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	4.85	3.77	9.7	4.42	6.95	4.7	8.97	7.96	2.75	6.03	5.02	2.82
Merged-chr14-14632608-1	chr14	14632508	14632708	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70417.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	2.02	3.52	7.99	4.02	7.36	8.15	11.29	8.52	5.31	6.53	6.53	3.45
Merged-chr5-130219674-3	chr5	130219600	130219800	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081394)	promoter-TSS (NM_001081394)	-44.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	10.5	6.29	7.99	10.05	7.77	10.35	9.63	7.57	12.59	10.54	7.54	8.77
Merged-chr4-63899347-3	chr4	63899247	63899447	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38063.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	9.69	3.77	27.38	16.09	13.5	9.72	19.6	26.83	8.26	6.53	16.58	5.95
Merged-chr6-28833462-2	chr6	28833297	28833497	+	751.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	CpG	-1650.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	7.27	4.02	2.85	2.82	14.73	12.86	6.31	6.2	2.56	3.01	3.01	5.01
Merged-chr15-96697106-2	chr15	96697015	96697215	+	751.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	2613.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.85	10.56	5.7	2.82	6.55	7.21	2.33	4.6	15.74	11.55	21.61	7.52
Merged-chr6-5363199-3	chr6	5363089	5363289	+	751.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-20197.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	11.71	8.3	11.98	23.73	11.86	6.59	14.28	16.68	10.23	13.05	13.57	8.14
Merged-chr15-55191378-3	chr15	55191288	55191488	+	751.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037937, intron 4 of 8)	MTC|LTR|ERVL-MaLR	57952.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	2.83	7.04	13.69	24.13	7.36	9.41	9.63	20.64	5.7	11.05	20.1	7.52
Merged-chr1-43843655-3	chr1	43843508	43843708	+	751.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15900.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	9.69	4.28	7.99	9.25	6.55	10.35	3.32	7.37	5.11	16.07	9.04	5.01
Merged-chr13-81171459-3	chr13	81171375	81171575	+	751.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	207401.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.27	7.04	6.85	4.02	18.41	5.33	10.63	8.19	8.65	4.02	13.57	9.4
Merged-chr10-59692649-3	chr10	59692542	59692742	+	751.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9921.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	2.42	8.8	13.69	8.85	15.55	10.66	9.97	6.76	13.18	14.06	19.09	11.28
Merged-chr7-67380340-3	chr7	67380253	67380453	+	751.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7495.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	12.11	11.82	14.26	22.52	20.05	15.05	5.65	14.61	11.01	20.59	17.59	6.89
Merged-chr13-6241679-3	chr13	6241583	6241783	+	751.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-306474.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	6.06	5.28	13.69	12.47	19.23	9.09	9.97	21.56	9.44	9.04	15.07	8.46
Merged-chr13-91170101-3	chr13	91169983	91170183	+	751.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	53904.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	13.73	8.3	18.83	11.66	13.5	6.59	7.64	23.16	9.64	4.52	16.58	8.46
Merged-chr1-152674040-2	chr1	152673935	152674135	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-48818.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.46	5.53	10.27	16.89	4.09	9.72	19.27	30.22	7.87	3.51	11.56	12.22
Merged-chrX-167163024-3	chrX	167162928	167163128	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46190.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	5.25	6.29	10.84	10.46	10.23	14.42	9.63	14.3	12.59	13.05	3.52	9.08
Merged-chr14-121405377-2	chr14	121405285	121405485	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26155.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	7.27	3.02	3.42	2.82	5.32	12.54	2.99	8.1	13.37	8.03	12.56	7.21
Merged-chr4-34457422-2	chr4	34457334	34457534	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93181.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	8.08	8.05	14.26	8.04	4.5	8.15	8.97	13.32	6.88	5.52	7.03	7.21
Merged-chr1-133136078-2	chr1	133135985	133136185	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	MIR|SINE|MIR	4919.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	7.67	8.55	5.7	6.44	15.14	3.76	6.98	9.87	12.19	0.5	4.52	5.33
Merged-chr6-48395703-1	chr6	48395603	48395803	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152251)	promoter-TSS (NR_152251)	117.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	5.25	5.53	4.56	8.45	6.55	5.64	9.3	5.44	7.87	4.02	8.54	2.82
Merged-chr7-44072943-1	chr7	44072843	44073043	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20653.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	3.23	1.76	1.71	7.24	6.95	1.25	6.64	8.33	0.59	0.0	0.5	0.0
Merged-chr7-118232819-1	chr7	118232719	118232919	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	10818.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	4.44	5.28	3.42	1.61	9.41	4.08	5.98	9.36	6.69	1.51	6.03	5.01
Merged-chr16-65174725-1	chr16	65174625	65174825	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68941.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	2.02	1.26	7.42	4.02	3.27	5.33	6.31	7.51	6.1	1.51	5.02	4.7
Merged-chr11-106770491-2	chr11	106770395	106770595	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_148431, intron 7 of 7)	B3|SINE|B2	8971.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	7.67	5.79	0.57	12.47	4.91	10.66	4.65	2.92	8.46	6.53	6.03	2.51
Merged-chr4-58552004-2	chr4	58551914	58552114	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	1279.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	8.08	1.26	1.71	4.02	1.64	7.84	2.66	5.27	10.23	1.0	15.58	5.95
Merged-chr6-137685506-1	chr6	137685406	137685606	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36221.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	4.85	1.76	5.7	8.45	7.77	5.33	2.99	8.02	6.1	3.01	7.54	0.63
Merged-chr5-142901602-3	chr5	142901566	142901766	+	751.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5088.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	14.13	7.55	6.28	10.46	10.23	11.6	4.32	2.13	6.29	14.06	5.02	2.82
Merged-chr12-85729582-3	chr12	85729486	85729686	+	751.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16953.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	9.29	6.04	4.56	6.84	12.27	15.68	5.31	9.45	17.31	16.07	10.55	8.77
Merged-chr5-123142996-2	chr5	123142890	123143090	+	751.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001040398, exon 2 of 17)	exon (NM_001040398, exon 2 of 17)	797.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.81	9.81	9.7	5.23	17.18	3.76	5.65	7.29	9.05	12.05	9.04	9.08
Merged-chr7-80439959-2	chr7	80439857	80440057	+	751.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1b|LINE|L1	-34521.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.67	9.06	5.7	8.04	6.55	9.72	11.29	13.71	9.24	8.54	15.58	7.21
Merged-chr10-39444173-2	chr10	39444060	39444260	+	751.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	74361.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	1.62	4.78	3.42	3.62	10.23	10.03	3.65	7.21	6.49	9.04	16.08	6.89
Merged-chr10-119051923-3	chr10	119051840	119052040	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1441.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	9.29	1.76	4.56	17.29	18.82	10.98	10.96	10.23	7.28	5.02	14.07	9.71
Merged-chr16-16303513-3	chr16	16303399	16303599	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038046, exon 1 of 5)	non-coding (NR_038046, exon 1 of 5)	534.0	NM_198246	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	8.08	7.55	2.28	7.24	8.18	5.33	9.3	9.03	8.26	10.04	14.57	12.84
Merged-chr10-61382016-3	chr10	61381905	61382105	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1518.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	9.69	3.77	7.42	13.27	16.77	3.76	8.64	9.76	10.03	13.56	8.54	7.83
Merged-chr3-40525501-3	chr3	40525403	40525603	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2591.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	11.31	14.59	5.7	8.04	5.73	14.42	1.66	7.26	10.03	9.54	7.03	3.45
Merged-chr2-124897448-3	chr2	124897347	124897547	+	751.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170680.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	6.06	7.8	18.83	17.29	9.82	20.38	8.64	14.52	9.83	9.04	12.06	10.65
Merged-chr5-63966552-3	chr5	63966467	63966667	+	751.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2330.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	11.71	16.85	20.54	9.25	14.73	10.66	10.3	11.02	9.83	12.55	10.55	14.72
Merged-chr7-113556374-3	chr7	113556273	113556473	+	751.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126544, intron 1 of 5)	intron (NR_126544, intron 1 of 5)	8614.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	13.73	7.29	10.27	3.22	9.82	18.19	7.31	9.84	16.72	13.05	12.06	4.39
Merged-chr2-118660129-3	chr2	118660033	118660233	+	751.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3444.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	11.71	10.06	2.28	7.24	6.55	11.29	5.98	5.58	8.46	8.03	2.01	4.07
Merged-chr4-43454252-2	chr4	43454157	43454357	+	751.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007654, exon 2 of 9)	exon (NM_007654, exon 2 of 9)	369.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	7.27	8.05	3.99	4.83	9.82	8.15	3.32	4.09	6.49	14.06	8.54	11.28
Merged-chr16-58690614-3	chr16	58690459	58690659	+	751.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20351.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	8.88	12.83	20.54	10.86	13.09	6.27	10.63	12.45	5.11	7.53	9.55	5.33
Merged-chr9-44461479-3	chr9	44461470	44461670	+	751.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6803.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	4.04	3.77	7.99	2.82	8.18	4.39	6.64	1.63	6.88	10.04	8.54	8.77
Merged-chr8-36612727-4	chr8	36612563	36612763	+	751.229187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	1280.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.42	1.51	11.41	4.83	4.91	6.59	7.31	9.81	9.64	3.01	9.55	5.95
Merged-chr4-101255230-3	chr4	101255154	101255354	+	751.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	(CA)n|Simple_repeat|Simple_repeat	10028.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.46	8.55	9.7	18.1	7.36	4.7	11.29	16.57	15.54	8.54	5.02	9.4
Merged-chr13-100517897-3	chr13	100517772	100517972	+	751.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360539, intron 2 of 6)	intron (NM_001360539, intron 2 of 6)	-25263.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	6.06	7.55	6.28	10.46	6.95	3.14	5.98	7.88	24.78	5.52	19.09	8.77
Merged-chr8-39639892-3	chr8	39639824	39640024	+	751.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	2754.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.04	1.76	18.25	8.04	7.77	14.74	9.97	12.93	15.74	9.54	13.57	4.07
Merged-chr17-67207287-2	chr17	67207159	67207359	+	751.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	147200.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.44	3.27	4.56	7.24	2.05	1.88	2.66	1.99	10.23	12.55	8.04	9.08
Merged-chr15-100463907-3	chr15	100463793	100463993	+	751.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5118.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	8.48	5.03	12.55	9.65	9.82	16.31	7.64	4.07	18.69	19.58	8.04	14.41
Merged-chr15-66785643-3	chr15	66785533	66785733	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	46196.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	9.69	6.29	11.41	12.47	8.59	8.47	15.28	19.57	12.59	7.03	9.55	8.77
Merged-chr5-43393411-2	chr5	43393297	43393497	+	751.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122172.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	1.62	2.01	8.56	9.25	1.23	6.59	7.97	12.25	6.88	12.05	16.58	8.46
Merged-chr16-4936293-3	chr16	4936161	4936361	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037666, intron 2 of 2)	intron (NR_037666, intron 2 of 2)	-2850.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	3.63	8.8	5.7	3.62	11.05	7.21	18.93	8.47	8.65	8.03	10.55	4.39
Merged-chr1-170967696-3	chr1	170967602	170967802	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077189, intron 3 of 7)	intron (NM_001077189, intron 3 of 7)	8369.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	10.5	5.79	2.28	11.26	7.36	21.32	15.28	15.45	11.01	10.04	9.55	8.77
Merged-chr12-17238999-1	chr12	17238899	17239099	+	751.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27596.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	1.62	1.51	2.85	1.61	0.0	2.51	1.33	1.93	20.46	11.05	14.57	8.77
Merged-chr6-99096213-3	chr6	99096124	99096324	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67926.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	12.52	13.08	6.85	15.28	19.23	9.41	11.29	16.04	8.46	5.52	18.59	5.95
Merged-chr6-43623647-2	chr6	43623532	43623732	+	751.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	Lx7|LINE|L1	42646.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	9.29	3.77	5.13	12.47	8.59	16.62	9.97	18.53	5.11	7.53	5.02	3.76
Merged-chr5-118615681-2	chr5	118615595	118615795	+	751.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54976.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	1.62	2.26	11.41	10.05	4.91	6.9	4.98	8.58	2.16	0.0	3.01	2.82
Merged-chr15-102234108-3	chr15	102234013	102234213	+	751.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011244)	TTS (NM_011244)	-2178.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	6.06	8.55	9.13	15.28	4.91	6.59	12.62	6.42	14.16	13.56	17.59	5.64
Merged-chr2-157142170-3	chr2	157142072	157142272	+	751.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-6950.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	10.9	13.08	7.99	10.46	7.77	13.48	5.98	7.68	10.62	13.56	8.04	10.96
Merged-chr18-69299832-3	chr18	69299720	69299920	+	751.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44672.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	8.88	10.82	22.25	14.88	8.59	10.03	4.65	13.01	7.67	3.01	12.56	7.83
Merged-chr10-82935181-3	chr10	82935079	82935279	+	751.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50318.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	10.5	8.55	11.41	6.03	14.32	11.92	6.31	7.07	10.42	5.52	14.57	15.35
Merged-chr13-50949684-3	chr13	50949599	50949799	+	751.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151028.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	12.52	10.56	5.13	14.08	8.18	10.66	2.33	15.59	12.0	13.56	17.59	10.96
Merged-chr1-160234053-3	chr1	160233954	160234154	+	751.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038621, intron 6 of 8)	intron (NM_001038621, intron 6 of 8)	-21162.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	10.9	8.05	13.69	15.28	32.32	34.49	28.9	33.31	8.46	6.53	9.55	4.39
Merged-chr1-125439403-2	chr1	125439287	125439487	+	751.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3660.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.4	2.01	2.28	2.01	11.05	7.84	8.64	9.28	4.92	2.01	11.05	4.7
Merged-chr11-86487106-3	chr11	86487002	86487202	+	751.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029788, intron 3 of 8)	intron (NM_029788, intron 3 of 8)	2445.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	6.46	12.07	5.13	13.27	11.05	15.37	6.31	10.32	9.64	12.55	15.07	7.21
Merged-chr2-127890784-3	chr2	127890690	127890890	+	751.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	36162.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	7.67	15.85	5.7	6.84	6.95	16.93	4.65	5.78	13.37	19.58	15.07	6.27
Merged-chr4-34429727-2	chr4	34429674	34429874	+	751.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120841.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.63	7.8	3.42	9.25	6.95	9.72	6.98	6.84	3.34	4.02	6.03	1.57
Merged-chr1-120293976-3	chr1	120293885	120294085	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22903.0	NM_001085409	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	5.65	6.54	10.84	16.09	9.0	11.29	7.97	19.35	18.88	7.53	19.6	8.77
Merged-chr14-8985601-3	chr14	8985499	8985699	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	319209.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	11.71	9.06	9.7	7.64	20.46	9.72	10.63	21.64	22.03	13.56	12.56	8.77
Merged-chr15-25675240-2	chr15	25675142	25675342	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	52692.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	7.27	8.55	7.99	4.42	2.45	6.59	10.63	9.34	1.38	0.0	2.51	1.88
Merged-chr6-108326592-1	chr6	108326492	108326692	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	113496.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	1.51	0.0	2.01	2.05	1.25	3.65	7.35	2.56	2.51	2.51	7.52
Merged-chr15-58622576-1	chr15	58622476	58622676	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	200851.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	2.83	2.77	4.56	3.62	0.82	1.88	6.31	7.68	8.26	1.51	1.51	2.19
Merged-chr1-191559985-2	chr1	191559882	191560082	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305233, intron 8 of 15)	intron (NM_001305233, intron 8 of 15)	15562.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	2.83	2.77	0.0	1.61	5.73	5.02	1.99	8.92	9.83	6.53	10.05	2.19
Merged-chr16-11743831-1	chr16	11743731	11743931	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028964, intron 20 of 20)	intron (NM_028964, intron 20 of 20)	-35871.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	2.02	13.58	10.84	3.22	1.64	6.9	1.0	2.8	5.11	5.52	6.53	1.25
Merged-chr1-72117931-1	chr1	72117831	72118031	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94376.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	2.02	0.75	1.14	0.0	1.23	3.76	3.65	5.78	4.72	1.51	6.03	4.07
Merged-chr1-151657284-1	chr1	151657184	151657384	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	85911.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.27	2.77	2.28	2.82	2.45	6.27	3.65	7.71	7.08	5.52	4.02	6.89
Merged-chr11-28440045-1	chr11	28439945	28440145	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181577, intron 2 of 4)	intron (NM_181577, intron 2 of 4)	144279.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	14.13	11.82	10.27	22.12	1.64	1.25	0.0	6.87	0.59	0.5	0.0	0.0
Merged-chr11-115049436-3	chr11	115049328	115049528	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1133.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	4.04	8.05	11.41	12.87	9.0	16.62	8.64	9.06	16.92	10.54	10.55	12.53
Merged-chr4-43630322-1	chr4	43630222	43630422	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1613.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	8.08	1.01	6.85	6.44	11.86	9.72	2.99	7.04	2.16	9.04	22.11	7.52
Merged-chr8-14652903-1	chr8	14652803	14653003	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-235633.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.42	0.5	0.0	0.0	2.05	0.31	4.32	6.76	8.46	6.53	10.05	7.83
Merged-chr2-60809605-3	chr2	60809540	60809740	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	71798.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.23	4.78	5.13	16.09	19.23	12.23	20.93	23.16	4.13	2.51	8.54	6.58
Merged-chr10-44698775-1	chr10	44698675	44698875	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-240027.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.04	5.03	0.0	3.62	11.86	3.14	0.66	7.07	2.75	5.02	5.53	1.88
Merged-chr13-21995659-1	chr13	21995559	21995759	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14082.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	10.09	8.55	3.42	6.84	2.86	11.29	1.66	2.1	4.13	3.51	7.03	4.39
Merged-chr1-45922502-1	chr1	45922402	45922602	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 2 of 7)	URR1B|DNA|hAT-Charlie	3092.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	9.29	2.77	1.14	0.0	4.09	2.2	6.98	5.07	2.36	5.02	5.02	3.45
Merged-chr3-123065678-1	chr3	123065578	123065778	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30691.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.81	5.28	2.28	7.24	7.36	2.51	4.32	10.71	8.85	2.01	23.11	5.01
Merged-chr15-100422176-1	chr15	100422076	100422276	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	879.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	5.25	3.52	1.14	0.8	3.27	2.2	2.99	4.91	8.65	5.52	13.06	2.82
Merged-chr10-25131031-1	chr10	25130931	25131131	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69139.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.42	1.01	10.27	3.62	4.91	4.7	5.31	9.06	2.56	1.0	4.52	9.08
Merged-chr4-129059245-3	chr4	129059090	129059290	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	919.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.67	17.86	4.56	5.23	13.09	20.07	3.99	4.01	10.03	22.59	5.53	5.33
Merged-chr2-127339081-1	chr2	127338981	127339181	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010090)	TTS (NM_010090)	442.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	9.69	7.8	9.13	4.83	6.14	13.8	3.99	2.8	13.77	14.06	3.52	2.82
Merged-chr1-72027134-1	chr1	72027034	72027234	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21939.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.5	0.0	2.01	2.86	2.51	7.97	5.13	2.75	3.01	8.54	2.51
Merged-chr7-16257481-1	chr7	16257381	16257581	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	B2_Mm2|SINE|B2	1857.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.04	12.07	2.28	6.84	4.5	15.05	6.98	2.13	13.57	22.59	6.03	6.27
Merged-chrX-12547224-1	chrX	12547124	12547324	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40535.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	6.46	9.31	19.97	2.01	4.09	3.14	1.0	2.21	7.47	1.51	6.03	0.63
Merged-chr13-113970964-1	chr13	113970864	113971064	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	176456.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.5	0.57	0.8	2.45	3.14	7.97	17.8	4.72	3.01	8.04	6.89
Merged-chr7-25315571-1	chr7	25315471	25315671	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183311, exon 15 of 15)	exon (NM_183311, exon 15 of 15)	-1593.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	4.85	8.05	6.85	5.63	5.73	5.96	6.98	1.49	6.1	4.02	3.52	10.02
Merged-chr8-41825096-1	chr8	41824996	41825196	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2171.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.81	2.01	0.0	0.0	7.36	5.02	4.32	10.49	4.33	0.0	0.0	2.19
Merged-chr4-59816171-1	chr4	59816071	59816271	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	LTR33A|LTR|ERVL	10521.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.04	3.27	6.85	9.25	7.36	1.88	1.0	6.67	1.57	2.51	4.52	6.58
Merged-chr17-14921790-1	chr17	14921690	14921890	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175173, intron 8 of 24)	intron (NM_175173, intron 8 of 24)	21334.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	4.85	2.01	3.42	13.27	2.86	7.21	1.0	5.52	5.11	3.51	13.57	2.82
Merged-chr17-62544390-2	chr17	62544304	62544504	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	336913.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	8.48	6.04	5.7	6.44	6.55	10.35	6.31	9.53	17.9	12.05	17.59	6.27
Merged-chrX-163869104-1	chrX	163869004	163869204	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39913.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	5.25	2.26	8.56	4.42	4.91	3.14	5.31	10.51	5.7	2.51	8.04	6.27
Merged-chr4-106301558-1	chr4	106301458	106301658	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14655.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	8.88	3.77	5.13	6.44	4.09	5.64	9.97	8.16	0.2	1.51	8.04	4.07
Merged-chr13-52252863-3	chr13	52252766	52252966	+	750.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	156125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	10.9	10.31	10.27	7.24	12.68	10.66	4.98	6.73	18.49	11.05	13.06	6.27
Merged-chr2-70946956-3	chr2	70946898	70947098	+	750.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71376.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	1.62	4.02	6.28	6.44	16.36	7.84	2.66	7.79	7.47	13.05	17.08	10.65
Merged-chr4-41469311-3	chr4	41469219	41469419	+	750.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	4171.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	10.9	10.82	17.11	12.47	12.27	8.78	5.98	20.38	8.65	11.05	15.07	6.89
Merged-chr3-96223158-2	chr3	96223063	96223263	+	750.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178214, exon 1 of 1)	3' UTR (NM_178214, exon 1 of 1)	2091.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	2.83	6.79	2.85	3.22	1.64	4.7	5.31	7.07	8.06	16.57	16.08	11.59
Merged-chr2-84895702-3	chr2	84895595	84895795	+	750.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9003.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	2.42	12.58	10.84	10.46	9.82	4.7	5.31	10.32	17.11	16.07	13.06	10.96
Merged-chr15-55306498-3	chr15	55306393	55306593	+	750.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1257.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	8.48	13.58	2.85	6.84	19.23	7.21	7.64	9.98	9.44	14.56	14.57	12.84
Merged-chr14-25660219-3	chr14	25660118	25660318	+	750.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 22 of 23)	intron (NM_183208, intron 22 of 23)	-33952.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	10.5	7.8	19.97	16.09	9.41	19.76	18.27	14.64	7.47	7.03	9.04	6.27
Merged-chr11-76253314-2	chr11	76253226	76253426	+	750.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9590.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	8.48	2.77	14.26	7.24	3.68	9.72	3.99	4.99	20.26	12.05	18.09	12.53
Merged-chr2-91237635-3	chr2	91237538	91237738	+	750.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	492.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	18.17	11.32	14.83	2.41	6.95	14.11	2.66	5.55	15.74	10.54	11.56	6.27
Merged-chr8-83997811-3	chr8	83997682	83997882	+	750.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	110.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	8.88	11.07	4.56	9.25	2.05	5.96	11.96	7.07	8.06	4.52	14.57	8.77
Merged-chr3-55115034-3	chr3	55114944	55115144	+	750.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	2878.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	10.09	6.79	5.7	9.25	8.18	7.53	12.62	15.17	13.37	19.58	13.06	9.4
Merged-chr1-133118352-2	chr1	133118249	133118449	+	750.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12817.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	10.9	11.07	7.42	5.63	6.55	6.27	6.64	2.33	11.01	10.04	29.65	10.02
Merged-chr6-13684291-1	chr6	13684191	13684391	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6325.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	3.23	2.52	7.42	3.22	8.18	10.66	6.98	6.45	6.88	8.03	8.54	2.82
Merged-chr2-49425779-2	chr2	49425675	49425875	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-25711.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.04	4.28	0.0	8.85	7.36	3.14	8.3	12.76	15.74	6.53	12.56	5.95
Merged-chr12-69333693-3	chr12	69333579	69333779	+	750.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025441, intron 16 of 32)	B3|SINE|B2	23497.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.65	9.56	7.42	6.84	9.0	9.09	5.65	5.52	20.46	14.56	16.58	12.22
Merged-chr4-5688280-1	chr4	5688180	5688380	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	-36032.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	2.42	2.01	2.28	2.01	10.23	4.39	10.63	8.07	2.36	7.53	11.56	3.45
Merged-chr9-59969490-1	chr9	59969390	59969590	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001040426, exon 18 of 18)	3' UTR (NM_001040426, exon 18 of 18)	18196.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	7.67	4.78	3.99	4.83	7.36	11.92	7.64	7.4	4.52	7.03	6.03	4.7
Merged-chr15-34456338-3	chr15	34456239	34456439	+	750.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173421, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3027.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	2.42	8.8	15.4	12.07	11.45	4.39	7.97	14.66	7.87	7.53	14.07	9.4
Merged-chr7-101427911-3	chr7	101427828	101428028	+	750.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6237.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	13.33	8.55	9.13	12.47	6.14	10.66	1.33	7.15	16.72	10.54	12.06	8.46
Merged-chr7-25217846-3	chr7	25217713	25217913	+	750.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106015)	promoter-TSS (NR_106015)	-88.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	6.86	12.07	9.13	8.45	10.64	8.47	3.32	11.19	11.8	11.05	12.06	10.34
Merged-chr9-56259666-2	chr9	56259577	56259777	+	750.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98607.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	2.83	1.01	3.42	0.8	3.27	7.84	2.66	5.75	14.75	20.59	18.09	10.02
Merged-chr12-55016576-1	chr12	55016476	55016676	+	750.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30240.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	6.06	3.77	6.28	10.05	5.73	3.76	2.66	2.83	13.96	3.51	9.55	7.52
Merged-chr14-72710615-1	chr14	72710515	72710715	+	750.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-612.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.63	4.53	4.56	6.84	7.36	11.92	2.99	7.74	6.29	10.54	8.54	10.65
Merged-chr1-135585247-1	chr1	135585147	135585347	+	750.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173437, exon 1 of 29)	exon (NM_173437, exon 1 of 29)	108.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	1.21	11.07	1.71	2.82	2.05	6.9	7.64	7.15	3.54	2.51	9.04	1.88
Merged-chr1-150496845-1	chr1	150496745	150496945	+	750.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-30680.0	NM_021400	96875.0	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	3.23	4.02	2.28	6.44	4.91	10.66	7.97	6.42	3.34	6.53	7.54	4.39
Merged-chr15-77830885-3	chr15	77830783	77830983	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	11292.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	10.09	16.35	7.42	4.42	14.73	14.11	5.31	4.04	9.83	7.03	7.03	6.27
Merged-chr5-62821034-3	chr5	62820952	62821152	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7229.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.85	11.32	9.7	9.65	11.86	14.74	10.96	12.0	10.23	9.54	12.56	4.7
Merged-chr8-22934629-3	chr8	22934531	22934731	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 16 of 17)	intron (NM_001081149, intron 16 of 17)	-40205.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	8.08	2.77	21.11	12.47	18.0	19.13	18.27	25.96	7.67	6.03	7.54	10.96
Merged-chr8-125699780-3	chr8	125699672	125699872	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41C|LTR|ERV1	29954.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	9.29	8.3	5.7	4.02	11.86	18.81	7.97	3.22	9.83	8.54	7.03	7.52
Merged-chr12-103065168-3	chr12	103065066	103065266	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081017, intron 14 of 48)	intron (NM_001081017, intron 14 of 48)	116307.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	10.5	8.55	15.4	18.5	13.09	7.84	5.31	16.12	10.23	8.03	7.54	5.33
Merged-chr1-74303276-2	chr1	74303245	74303445	+	750.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027154, intron 1 of 11)	PB1D7|SINE|Alu	991.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	8.08	3.77	9.7	4.02	4.5	10.03	0.66	2.52	3.15	3.01	2.51	7.83
Merged-chr8-60887147-2	chr8	60887065	60887265	+	750.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3228.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	14.54	3.27	3.42	5.23	10.64	6.9	4.98	7.88	10.23	7.53	13.57	6.58
Merged-chr5-81078193-2	chr5	81078094	81078294	+	750.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	ORR1F|LTR|ERVL-MaLR	56601.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.42	6.79	9.13	8.04	14.73	7.21	7.64	12.84	10.03	9.54	7.54	5.95
Merged-chr18-38418162-3	chr18	38418063	38418263	+	750.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-744.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	6.46	9.81	7.99	9.65	6.55	12.54	8.3	7.18	12.59	11.05	9.04	9.71
Merged-chrX-12969346-2	chrX	12969258	12969458	+	750.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-8515.0	NR_153101	75037.0	Mm.387976	NR_153101		4930500G05Rik	-	RIKEN cDNA 4930500G05 gene	ncRNA	2.83	6.79	9.7	10.86	9.0	6.59	11.96	11.75	3.34	2.01	18.59	6.58
Merged-chr19-47242442-2	chr19	47242352	47242552	+	750.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163480, intron 3 of 5)	intron (NM_001163480, intron 3 of 5)	13609.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	2.42	1.26	0.0	1.61	9.82	5.33	1.99	9.14	10.23	7.03	15.07	7.83
Merged-chrX-102505359-3	chrX	102505165	102505365	+	750.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027382)	promoter-TSS (NM_027382)	-107.0	NM_027382	70315.0	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	2.42	3.02	1.71	2.01	3.68	8.78	9.97	3.79	6.88	10.54	3.01	3.76
Merged-chr12-51811961-2	chr12	51811860	51812060	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144788, intron 2 of 42)	intron (NM_144788, intron 2 of 42)	17576.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	1.51	1.14	3.22	9.82	3.76	2.33	7.29	9.05	2.01	11.56	6.89
Merged-chr9-110680875-2	chr9	110680785	110680985	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	24382.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.23	5.79	5.7	4.83	12.27	13.48	0.0	2.66	6.69	13.56	3.01	9.71
Merged-chr9-95565649-1	chr9	95565549	95565749	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5832.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.25	0.5	2.85	2.41	1.64	6.27	5.31	5.02	2.16	1.0	4.02	3.13
Merged-chr12-84515736-1	chr12	84515636	84515836	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	-54092.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	6.46	2.26	6.85	12.07	9.82	8.78	12.95	7.37	4.92	5.02	6.53	8.77
Merged-chr4-117132132-1	chr4	117132032	117132232	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313916, intron 5 of 14)	intron (NM_001313916, intron 5 of 14)	1831.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	3.23	7.8	4.56	0.0	3.68	5.33	5.98	2.33	2.95	3.51	6.03	6.89
Merged-chr13-23772750-2	chr13	23772649	23772849	+	750.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9081.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	8.08	9.06	7.42	6.84	9.0	10.03	7.31	7.85	3.93	5.52	6.03	6.58
Merged-chr2-173300932-1	chr2	173300832	173301032	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24399.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	1.62	4.02	9.7	2.41	6.95	5.96	6.64	6.0	4.72	8.54	10.05	6.58
Merged-chr11-114893909-1	chr11	114893809	114894009	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347654, intron 2 of 6)	intron (NM_001347654, intron 2 of 6)	3868.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.85	2.26	0.57	3.22	11.86	6.59	11.96	8.92	4.92	2.01	6.03	4.39
Merged-chr2-165977017-2	chr2	165976945	165977145	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15592.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.86	2.52	2.85	2.82	4.5	5.64	4.65	5.97	12.19	3.01	13.57	8.46
Merged-chrX-142408533-1	chrX	142408433	142408633	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17998.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	10.5	3.52	1.71	4.83	4.09	6.27	7.31	6.5	5.7	1.51	2.01	2.82
Merged-chr17-25015346-2	chr17	25015216	25015416	+	750.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-86.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	9.69	12.58	11.41	8.04	10.23	11.29	7.31	6.0	10.62	13.56	14.07	10.02
Merged-chr11-72697519-2	chr11	72697411	72697611	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009671, intron 1 of 24)	ORR1E|LTR|ERVL-MaLR	7509.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	5.65	2.26	10.27	10.05	8.18	15.99	10.3	9.11	13.37	8.03	17.08	8.14
Merged-chr12-102713362-1	chr12	102713262	102713462	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8493.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	2.42	5.28	6.28	6.84	7.36	3.76	5.98	6.93	5.9	4.02	8.04	5.95
Merged-chr3-37340151-2	chr3	37340065	37340265	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8488.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	1.62	0.75	0.0	1.21	8.18	7.84	11.63	11.38	5.11	10.54	14.07	9.08
Merged-chr19-10240080-2	chr19	10239989	10240189	+	750.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033481, intron 1 of 25)	intron (NM_001033481, intron 1 of 25)	659.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	7.67	9.31	7.42	7.64	9.41	16.31	7.64	8.24	7.87	4.02	10.05	5.64
Merged-chr2-52784136-3	chr2	52784041	52784241	+	750.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41992.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	15.34	8.3	13.69	9.25	2.86	10.98	12.29	13.15	10.03	9.54	9.04	14.72
Merged-chr9-50945003-3	chr9	50944899	50945099	+	750.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	Lx7|LINE|L1	64074.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	10.9	12.58	15.4	13.67	8.59	6.59	9.63	11.52	13.57	9.54	8.04	8.77
Merged-chrX-36989557-2	chrX	36989459	36989659	+	750.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_019942, exon 1 of 10)	5' UTR (NM_019942, exon 1 of 10)	136.0	NM_001177324	56526.0	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	13.33	8.05	36.51	15.69	9.41	5.96	10.96	12.14	11.8	0.5	7.54	5.01
Merged-chr1-144244472-2	chr1	144244398	144244598	+	750.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_015811)	TTS (NM_015811)	4606.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.88	6.54	9.13	6.84	16.77	9.09	6.64	5.21	5.51	3.51	7.54	6.27
Merged-chr2-27761313-4	chr2	27761074	27761274	+	750.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	50591.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.42	1.51	2.28	3.62	3.68	4.39	10.63	5.5	10.03	5.02	5.02	3.76
Merged-chr15-80097673-3	chr15	80097590	80097790	+	750.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	6356.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	15.34	10.82	6.85	11.66	14.73	9.72	6.98	16.71	16.33	12.55	11.05	9.71
Merged-chr8-106063233-3	chr8	106063120	106063320	+	750.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010901, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	3617.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	11.71	7.29	9.7	0.8	11.05	15.99	6.31	9.31	14.36	8.03	11.05	12.22
Merged-chr16-10461393-3	chr16	10461296	10461496	+	750.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14034.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	8.48	8.8	15.97	12.47	9.41	9.41	12.95	11.13	7.28	6.03	6.53	6.58
Merged-chr8-123653772-3	chr8	123653670	123653870	+	750.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133955)	promoter-TSS (NM_133955)	-159.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	13.73	13.08	6.28	19.31	12.68	9.09	6.64	5.5	10.03	5.52	11.56	9.08
Merged-chr7-44051394-2	chr7	44051305	44051505	+	750.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020268)	promoter-TSS (NM_020268)	-885.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	5.25	7.04	9.13	16.09	15.96	19.44	11.29	11.41	0.39	0.0	1.0	1.88
Merged-chr9-31131926-2	chr9	31131796	31131996	+	750.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011176)	promoter-TSS (NM_011176)	-97.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	12.52	7.29	6.85	2.01	16.36	8.47	10.3	10.37	9.44	7.53	14.57	3.45
Merged-chr12-81927975-2	chr12	81927851	81928051	+	750.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 6 of 35)	intron (NM_018814, intron 6 of 35)	67921.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	4.04	5.53	7.99	5.23	8.18	14.42	8.97	17.86	6.1	8.54	14.07	3.76
Merged-chr9-105122548-1	chr9	105122448	105122648	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9257.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.86	2.52	0.0	3.22	7.36	11.29	5.31	8.86	2.75	6.03	6.03	5.95
Merged-chr3-146560617-1	chr3	146560517	146560717	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36532.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	2.83	4.78	2.28	10.46	5.73	5.33	4.65	9.14	0.0	0.5	0.0	0.0
Merged-chr7-74668404-3	chr7	74668314	74668514	+	750.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113634.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.63	7.8	11.41	15.28	6.95	5.96	3.32	6.53	14.16	20.59	13.57	15.35
Merged-chr15-12213793-1	chr15	12213693	12213893	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	8765.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	2.02	3.02	2.85	1.21	8.18	7.84	2.66	6.06	2.75	1.51	2.51	2.82
Merged-chr2-173229722-3	chr2	173229658	173229858	+	750.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022995, intron 2 of 3)	intron (NM_022995, intron 2 of 3)	-10836.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	5.25	5.79	3.99	4.02	6.55	6.9	4.98	8.72	7.28	5.02	13.57	9.4
Merged-chr9-57238372-1	chr9	57238272	57238472	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014398, intron 1 of 12)	B1F|SINE|Alu	1816.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	5.65	6.54	6.28	16.09	11.86	1.88	9.97	7.54	3.34	2.01	9.04	2.19
Merged-chr2-90612381-3	chr2	90612263	90612463	+	750.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31716.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	10.09	5.79	3.42	2.01	5.73	10.03	9.97	9.7	10.62	18.58	16.58	12.84
Merged-chr15-28189893-2	chr15	28189810	28190010	+	750.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.63	3.02	9.13	10.86	7.77	4.39	1.66	9.76	8.85	5.52	18.09	15.35
Merged-chr14-55101927-2	chr14	55101837	55102037	+	750.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007455, intron 14 of 21)	intron (NM_007455, intron 14 of 21)	4656.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	7.67	2.77	6.85	1.61	5.73	4.39	9.97	6.22	3.54	4.52	13.57	11.59
Merged-chr2-6178624-1	chr2	6178524	6178724	+	750.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14627.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	2.42	1.01	6.85	4.83	6.55	15.68	9.97	6.7	6.49	3.01	2.51	4.39
Merged-chr6-88136333-3	chr6	88136234	88136434	+	750.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32076.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	5.25	9.56	8.56	12.87	7.36	6.27	6.98	5.58	8.65	5.02	7.03	12.22
Merged-chr7-96849148-2	chr7	96849043	96849243	+	750.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 22 of 32)	L1MA5A|LINE|L1	-47594.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	6.46	8.05	14.26	7.24	20.86	10.66	35.54	43.65	6.69	4.52	10.05	2.82
Merged-chr6-16943685-3	chr6	16943558	16943758	+	750.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45217.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	11.71	5.28	11.41	12.07	13.09	2.2	9.3	16.88	11.21	6.53	12.06	7.52
Merged-chr19-16046075-3	chr19	16045967	16046167	+	750.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60992.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	9.69	6.54	7.99	4.42	6.95	4.7	18.27	12.36	13.37	2.51	19.6	6.58
Merged-chr9-104569618-3	chr9	104569518	104569718	+	750.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028719, exon 1 of 16)	5' UTR (NM_028719, exon 1 of 16)	135.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	7.67	9.06	10.27	9.65	31.5	16.31	11.63	26.8	14.75	8.54	12.56	5.64
Merged-chr3-88677530-3	chr3	88677434	88677634	+	750.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-8253.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	9.69	9.56	0.0	7.24	10.23	16.93	5.31	10.79	17.31	14.56	12.56	11.9
Merged-chr3-105981114-2	chr3	105981014	105981214	+	750.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007696, intron 8 of 10)	intron (NM_007696, intron 8 of 10)	7312.0	NM_007696	12659.0	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	7.27	4.02	13.12	5.63	11.45	13.17	3.99	9.39	1.57	2.01	5.02	2.19
Merged-chr1-91056589-3	chr1	91056476	91056676	+	750.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	3132.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	10.9	5.79	13.69	10.46	4.09	8.15	4.65	5.72	23.01	17.07	11.56	11.59
Merged-chr5-139373014-2	chr5	139372919	139373119	+	750.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3274.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	1.21	4.78	3.99	5.23	2.05	5.96	8.97	6.28	8.85	4.52	9.04	5.95
Merged-chr5-125107518-3	chr5	125107404	125107604	+	750.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	71710.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	7.27	9.06	5.13	12.07	15.55	12.54	8.97	12.25	7.47	21.59	17.08	6.89
Merged-chr15-101859893-3	chr15	101859772	101859972	+	750.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001003667)	TTS (NM_001003667)	-9086.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	10.9	10.06	7.99	1.21	6.55	5.64	8.64	5.16	3.74	3.01	4.02	5.33
Merged-chr10-80161908-3	chr10	80161815	80162015	+	750.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-5924.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	4.44	7.04	3.99	3.22	6.95	15.68	9.97	7.71	4.52	5.02	11.56	4.7
Merged-chr7-35150149-2	chr7	35150057	35150257	+	750.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30864.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	9.69	8.05	11.41	8.85	19.23	15.68	7.97	8.83	8.26	8.03	6.03	4.07
Merged-chr2-117121787-3	chr2	117121707	117121907	+	750.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	CpG	736.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	15.34	6.29	13.12	2.82	13.09	19.76	11.96	5.55	10.42	9.04	12.06	8.77
Merged-chr17-78936514-1	chr17	78936414	78936614	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	556.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	4.85	5.53	1.71	1.61	4.09	2.82	7.97	5.8	4.52	6.53	2.51	6.58
Merged-chr10-44669126-1	chr10	44669026	44669226	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-210378.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.04	1.51	4.56	2.41	10.64	6.9	10.96	1.32	1.77	1.51	9.04	3.45
Merged-chr19-15815398-2	chr19	15815300	15815500	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109222.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	5.65	1.51	10.27	8.04	16.77	6.27	18.93	21.28	6.69	3.51	5.53	11.28
Merged-chr10-26833604-1	chr10	26833504	26833704	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	61092.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.81	1.51	5.7	1.61	5.73	1.25	5.31	7.77	1.77	3.51	3.52	3.13
Merged-chr17-28511257-2	chr17	28511154	28511354	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19607.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.25	4.53	3.42	3.22	9.82	12.86	4.65	2.3	17.11	10.04	12.06	3.76
Merged-chr18-24654472-3	chr18	24654312	24654512	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026779, intron 1 of 14)	intron (NM_026779, intron 1 of 14)	721.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	4.85	7.04	8.56	1.61	1.23	5.02	12.29	3.93	9.24	4.52	14.57	7.21
Merged-chr11-98972326-1	chr11	98972226	98972426	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361954, intron 6 of 7)	intron (NM_001361954, intron 6 of 7)	7454.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	8.88	9.81	4.56	4.02	3.68	5.33	4.98	3.87	9.44	4.52	5.53	4.39
Merged-chr7-43944927-1	chr7	43944827	43945027	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033120)	promoter-TSS (NR_033120)	-85.0	NR_033120	16604.0	Mm.195787	NR_033120	ENSMUSG00000060161	Klk1b7-ps	1700127D06Rik|Klk-ps2|mGK-7	kallikrein 1-related peptidase b7, pseudogene	pseudo	1.62	4.02	0.0	2.41	2.45	6.59	7.31	5.5	0.2	1.0	1.0	0.31
Merged-chr7-27860083-1	chr7	27859983	27860183	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-502.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	2.83	2.52	8.56	3.62	1.64	6.9	2.66	6.48	4.92	4.52	5.02	1.25
Merged-chrX-140955736-2	chrX	140955651	140955851	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164177, intron 1 of 4)	intron (NM_001164177, intron 1 of 4)	960.0	NM_016883	53380.0	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	6.06	4.28	2.28	0.0	5.73	12.23	9.3	3.64	12.59	12.55	8.54	0.94
Merged-chr2-48950364-1	chr2	48950264	48950464	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355296)	promoter-TSS (NM_001355296)	-130.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	6.06	6.29	2.85	4.02	8.18	11.92	8.64	9.9	8.06	12.05	8.54	7.21
Merged-chr4-145025336-1	chr4	145025236	145025436	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	132199.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.04	2.77	5.13	2.41	3.68	2.82	4.98	5.1	0.98	0.0	0.0	3.13
Merged-chr15-80024830-1	chr15	80024730	80024930	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10022.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.44	3.52	2.28	3.22	2.05	5.33	5.31	3.9	2.75	2.51	1.51	4.39
Merged-chr8-72005997-2	chr8	72005892	72006092	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	3634.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.63	5.53	7.99	2.41	11.05	4.08	5.98	6.03	9.05	13.56	7.54	7.21
Merged-chr15-66098423-1	chr15	66098323	66098523	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	L1M4|LINE|L1	-121619.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	6.86	4.53	7.99	9.25	8.18	4.7	6.98	10.26	4.72	8.54	10.05	5.01
Merged-chr19-55332816-2	chr19	55332720	55332920	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	16763.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	16.56	9.81	9.13	4.02	9.41	12.23	5.31	10.96	15.93	8.54	6.53	1.25
Merged-chr5-111141177-2	chr5	111141037	111141237	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	136993.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	2.83	2.52	1.71	4.02	2.05	2.82	5.31	4.01	2.16	3.01	4.02	6.58
Merged-chr3-35948411-1	chr3	35948311	35948511	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-15445.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	3.23	3.02	7.42	4.42	2.05	2.51	4.98	5.58	1.38	3.01	7.54	1.88
Merged-chr5-43662645-1	chr5	43662545	43662745	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 1 of 37)	intron (NM_001359906, intron 1 of 37)	266.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.81	0.5	5.13	6.44	8.18	4.7	2.99	6.62	0.59	4.02	1.0	0.63
Merged-chr15-4727828-1	chr15	4727728	4727928	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	618.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	3.23	3.02	1.14	2.01	3.27	3.45	3.99	6.87	7.47	4.52	3.01	1.88
Merged-chr5-134343176-1	chr5	134343076	134343276	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	16722.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	24.23	10.82	6.85	10.05	5.32	4.39	3.65	4.43	5.51	4.52	4.02	4.39
Merged-chr13-94387063-1	chr13	94386963	94387163	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	L1MD2|LINE|L1	28103.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	3.23	0.5	7.99	4.83	2.45	4.39	6.64	7.4	1.77	6.03	5.02	3.45
Merged-chr5-143634841-2	chr5	143634737	143634937	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	12390.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	7.67	5.03	6.85	14.08	9.41	4.39	1.99	8.64	6.49	2.01	5.02	8.14
Merged-chr2-52673361-1	chr2	52673261	52673461	+	750.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	2498.0	NM_001285428	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	9.69	8.3	7.99	6.84	2.45	4.08	2.33	7.63	2.56	1.0	25.12	9.4
Merged-chr6-122756061-1	chr6	122755961	122756161	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13316.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	12.11	9.31	3.99	6.44	4.09	3.14	2.66	1.21	13.18	9.04	6.03	3.45
Merged-chr14-55094928-2	chr14	55094811	55095011	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	127.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	6.86	8.8	3.42	4.83	8.18	7.21	5.65	9.95	7.28	8.54	13.06	4.7
Merged-chr15-64222800-3	chr15	64222693	64222893	+	749.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	PB1D11|SINE|Alu	89880.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	8.88	10.82	12.55	9.25	4.91	6.59	6.98	10.82	15.74	9.04	13.57	7.52
Merged-chr12-111427909-3	chr12	111427808	111428008	+	749.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	10463.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	9.29	6.29	6.85	4.83	11.45	17.25	5.98	6.42	21.44	16.57	9.04	18.8
Merged-chr7-75702741-4	chr7	75702760	75702960	+	749.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	MIRb|SINE|MIR	-145478.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.63	4.78	3.99	3.22	8.59	3.76	5.31	8.24	4.52	6.53	6.53	6.27
Merged-chr8-40926174-2	chr8	40926083	40926283	+	749.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026840)	promoter-TSS (NM_026840)	-50.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	1.62	8.8	0.57	4.83	11.86	6.9	9.63	9.53	9.44	10.04	18.09	10.02
Merged-chr8-70654330-3	chr8	70654235	70654435	+	749.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	5403.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.46	12.07	5.13	6.03	6.14	3.76	5.98	11.72	5.51	6.03	6.03	10.02
Merged-chr11-77622168-3	chr11	77622073	77622273	+	749.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14358.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	13.73	9.06	5.13	2.82	3.68	11.6	8.97	9.34	13.37	11.05	5.02	7.83
Merged-chr11-61659197-2	chr11	61659091	61659291	+	749.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	5870.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	9.29	11.57	11.41	10.86	10.23	11.92	2.66	6.5	10.62	2.01	7.54	3.13
Merged-chr15-102381770-2	chr15	102381664	102381864	+	749.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14796.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	10.5	4.53	6.85	3.62	3.68	6.59	6.98	8.02	11.8	5.02	11.05	7.52
Merged-chr2-28619091-2	chr2	28618993	28619193	+	749.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160406, intron 1 of 6)	intron (NM_001160406, intron 1 of 6)	2889.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	9.29	7.04	10.27	5.23	7.36	18.81	6.98	7.15	6.69	5.52	6.53	2.51
Merged-chr18-61377877-2	chr18	61377780	61377980	+	749.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	20020.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	3.63	10.06	19.4	11.66	24.14	7.84	6.64	9.95	14.36	5.52	8.04	2.82
Merged-chr1-164681810-3	chr1	164681723	164681923	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114840.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	12.11	5.79	10.27	28.56	6.14	7.21	9.3	27.64	16.92	12.55	52.76	15.04
Merged-chrX-166718292-3	chrX	166718198	166718398	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56273.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	8.08	16.1	12.55	3.22	2.86	11.6	7.31	4.09	24.39	17.57	32.66	10.65
Merged-chr11-101464469-3	chr11	101464358	101464558	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1741.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	7.27	10.06	7.99	3.22	2.45	6.59	8.64	13.07	12.98	4.02	6.53	6.27
Merged-chr1-138131327-3	chr1	138131170	138131370	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	43856.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.65	3.27	2.85	6.84	3.68	9.41	3.99	10.29	8.06	3.51	8.04	5.95
Merged-chr14-30591591-3	chr14	30591445	30591645	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18765.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.44	2.01	2.85	9.25	10.64	9.72	2.99	4.01	12.98	16.07	12.56	6.27
Merged-chr19-14506912-1	chr19	14506812	14507012	+	749.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-68406.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	4.85	2.77	10.84	8.04	6.55	8.78	7.97	8.21	6.1	4.52	7.54	6.27
Merged-chr3-36771779-3	chr3	36771682	36771882	+	749.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-81615.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	5.65	6.79	3.42	6.03	18.41	9.41	9.3	13.74	7.87	6.03	17.08	9.71
Merged-chr17-57098478-3	chr17	57098397	57098597	+	749.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-6888.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	8.88	10.31	5.13	6.84	8.59	30.73	8.64	7.46	15.34	26.61	9.04	3.76
Merged-chr7-24954559-3	chr7	24954448	24954648	+	749.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15527.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	12.52	4.28	9.7	8.85	11.05	21.01	8.97	10.99	10.42	8.54	7.03	6.27
Merged-chr6-124790270-1	chr6	124790170	124790370	+	749.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-10543.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.81	2.77	3.42	6.44	17.59	10.03	4.65	8.19	9.44	2.01	7.03	3.13
Merged-chr15-8589875-2	chr15	8589767	8589967	+	749.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	120940.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	8.88	7.04	5.13	7.64	10.64	8.15	3.99	9.2	7.28	8.03	8.54	6.89
Merged-chr9-65549302-2	chr9	65549198	65549398	+	749.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30789.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.08	8.3	10.27	6.84	13.5	10.98	9.97	10.07	5.7	4.02	9.04	1.57
Merged-chr1-23466356-2	chr1	23466261	23466461	+	749.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83186.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	2.42	4.53	11.41	5.23	7.36	5.02	7.31	7.93	8.65	3.01	5.53	5.64
Merged-chr3-117438966-2	chr3	117438871	117439071	+	749.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78095.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	6.06	4.78	3.42	4.83	11.05	3.76	2.99	7.43	9.83	11.05	17.08	9.08
Merged-chr12-110454357-3	chr12	110454268	110454468	+	749.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	7189.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	8.88	7.55	4.56	11.26	7.36	10.03	8.3	9.7	13.18	8.03	6.53	11.59
Merged-chr11-116095722-3	chr11	116095641	116095841	+	749.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8746.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	15.75	6.29	9.13	24.13	4.91	5.02	9.63	6.22	9.64	18.58	10.05	10.65
Merged-chr17-27909807-3	chr17	27909717	27909917	+	749.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	511.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	9.29	17.1	10.27	10.86	4.09	18.19	8.97	8.21	10.62	9.04	9.04	22.56
Merged-chr3-13471686-3	chr3	13471583	13471783	+	749.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178631)	promoter-TSS (NM_178631)	28.0	NM_001357035	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	8.88	12.07	4.56	12.07	15.55	25.09	29.9	20.8	10.82	14.06	17.59	8.46
Merged-chr15-73147930-3	chr15	73147834	73148034	+	749.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37013.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	8.08	8.05	16.54	9.65	6.55	5.02	5.65	8.21	12.59	19.58	11.56	8.77
Merged-chr1-64088915-1	chr1	64088815	64089015	+	749.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	32474.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.86	1.51	3.99	1.61	7.36	8.78	5.98	6.53	2.56	0.0	3.01	2.82
Merged-chr1-128597459-2	chr1	128597353	128597553	+	749.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5154.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.06	9.06	1.71	4.42	9.41	5.02	13.95	18.2	5.7	9.04	10.05	7.21
Merged-chr3-87527329-2	chr3	87527228	87527428	+	749.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359750, intron 2 of 4)	intron (NM_001359750, intron 2 of 4)	1750.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	19.79	12.83	8.56	5.63	11.86	11.29	4.98	4.96	8.26	2.51	5.53	3.13
Merged-chr1-52703299-2	chr1	52703196	52703396	+	749.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357464, intron 2 of 7)	intron (NM_001357464, intron 2 of 7)	24022.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	3.23	2.52	2.85	8.04	13.09	16.31	9.97	19.49	5.9	4.02	12.56	8.46
Merged-chr15-99394239-3	chr15	99394139	99394339	+	749.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1020.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	7.67	6.54	11.41	11.66	11.05	8.47	6.64	4.85	14.16	7.03	12.56	10.02
Merged-chr8-33271958-2	chr8	33271854	33272054	+	749.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011721, intron 23 of 33)	intron (NM_011721, intron 23 of 33)	113573.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	4.04	4.02	15.4	9.65	6.14	8.15	4.65	11.33	6.88	10.04	9.55	7.52
Merged-chr9-85368544-3	chr9	85368442	85368642	+	749.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41392.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	12.92	7.29	12.55	20.11	9.0	6.9	6.31	19.68	17.51	8.03	10.05	11.59
Merged-chr17-26467723-1	chr17	26467623	26467823	+	749.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40749.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.42	3.52	3.42	2.01	10.23	11.29	7.31	5.92	4.92	5.52	1.51	2.19
Merged-chr13-94838286-2	chr13	94838193	94838393	+	749.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009321, intron 3 of 3)	intron (NM_009321, intron 3 of 3)	-37334.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	12.11	7.04	12.55	10.05	9.0	9.41	4.65	17.22	9.05	3.51	6.53	9.71
Merged-chr5-121124454-3	chr5	121124376	121124576	+	749.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	66921.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	14.54	7.55	13.12	8.85	14.32	9.41	8.3	4.21	12.98	20.08	8.54	13.47
Merged-chr4-129036007-5	chr4	129035852	129036052	+	749.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-22319.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.04	4.28	5.7	4.02	6.14	3.45	5.65	4.65	9.24	6.53	4.52	7.52
Merged-chr14-87215290-3	chr14	87215197	87215397	+	749.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74073.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	13.33	5.28	5.13	8.45	16.36	15.05	5.98	16.46	15.93	9.54	17.08	11.59
Merged-chr19-34340535-2	chr19	34340440	34340640	+	749.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	49881.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	7.27	7.04	2.28	6.84	7.77	13.8	9.3	7.99	15.93	10.54	21.1	10.34
Merged-chr7-105750846-2	chr7	105750706	105750906	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009906, intron 3 of 12)	intron (NM_009906, intron 3 of 12)	1429.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	4.85	4.53	1.14	2.41	2.45	4.39	2.33	4.65	6.88	7.03	5.02	5.64
Merged-chr4-144980282-1	chr4	144980182	144980382	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87145.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	8.88	5.03	3.99	4.42	13.5	16.62	8.3	7.23	7.67	11.05	3.01	0.0
Merged-chr12-51844221-1	chr12	51844121	51844321	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.4	2.01	2.85	3.62	9.0	0.0	5.65	4.51	0.2	3.51	4.52	1.88
Merged-chr4-59534037-3	chr4	59533941	59534141	+	749.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	15323.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	12.11	10.06	2.28	14.88	0.41	7.84	4.32	6.28	15.14	13.56	8.54	12.84
Merged-chr4-144894429-1	chr4	144894329	144894529	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	1292.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	2.02	4.53	3.42	9.25	2.86	5.64	6.98	8.64	3.74	7.53	4.52	2.19
Merged-chr7-101033530-1	chr7	101033430	101033630	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21477.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.25	3.02	5.13	1.61	11.05	3.76	3.99	9.11	0.39	1.0	1.0	1.25
Merged-chr3-51718151-1	chr3	51718051	51718251	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	56972.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.65	3.77	10.27	18.5	7.77	2.51	6.64	8.61	2.36	2.01	3.01	4.39
Merged-chr10-39427098-2	chr10	39427069	39427269	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	57370.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	1.62	0.75	2.28	6.44	1.64	0.94	5.31	5.44	3.93	7.53	3.52	4.7
Merged-chr13-75825118-1	chr13	75825018	75825218	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14767.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.0	2.01	2.28	2.41	11.05	7.53	7.64	6.36	2.75	11.05	7.03	2.51
Merged-chr18-61106787-2	chr18	61106725	61106925	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1253.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.81	2.52	3.99	3.62	6.55	7.53	3.99	2.55	6.1	9.04	7.54	10.65
Merged-chr12-80918024-2	chr12	80917933	80918133	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6414.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	6.46	4.02	4.56	3.22	9.82	10.35	3.32	8.55	6.88	9.54	17.08	4.39
Merged-chr2-27759957-1	chr2	27759857	27760057	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49374.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.67	3.02	1.71	2.01	3.27	8.47	0.33	3.14	2.56	2.01	3.52	4.7
Merged-chr15-82346846-2	chr15	82346741	82346941	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026914, intron 1 of 2)	intron (NM_026914, intron 1 of 2)	795.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	8.88	7.04	4.56	8.85	10.64	3.14	6.31	8.02	10.23	14.06	4.52	9.4
Merged-chr7-120868480-1	chr7	120868380	120868580	+	749.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	PB1D11|SINE|Alu	17291.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	20.19	8.8	10.84	16.89	0.41	0.63	0.33	0.39	1.77	0.0	0.0	1.25
Merged-chr2-11254122-1	chr2	11254022	11254222	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008859, intron 9 of 17)	intron (NM_008859, intron 9 of 17)	81740.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.65	3.52	7.42	4.42	7.36	10.35	3.99	8.16	12.0	4.52	13.06	5.33
Merged-chr4-139205986-3	chr4	139205886	139206086	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	B3A|SINE|B2	11875.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.85	9.31	11.41	12.47	6.14	5.96	5.98	6.76	17.31	13.56	18.09	12.22
Merged-chr4-135179293-3	chr4	135179166	135179366	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58621.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	30.69	25.15	19.4	12.07	3.27	7.84	13.95	3.45	9.24	9.54	10.55	6.27
Merged-chr19-55577585-3	chr19	55577470	55577670	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360432)	TTS (NM_001360432)	124634.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.65	11.82	10.84	8.45	5.73	6.27	8.3	7.43	13.18	9.04	13.06	11.59
Merged-chr5-66081184-3	chr5	66081063	66081263	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17016.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	10.9	8.8	11.41	10.05	24.14	9.41	7.31	9.7	20.85	9.04	16.08	7.83
Merged-chr6-146676406-2	chr6	146676303	146676503	+	749.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19185.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	13.33	9.81	3.42	9.65	11.45	6.9	7.31	10.51	15.54	7.53	5.53	7.21
Merged-chr4-98189119-2	chr4	98189003	98189203	+	749.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	194162.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	2.83	1.51	6.85	8.45	5.32	7.53	8.64	12.34	15.14	2.51	11.05	8.14
Merged-chr11-62846048-3	chr11	62845958	62846158	+	749.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1065.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	19.79	7.55	16.54	12.87	9.41	3.45	3.32	6.9	11.41	11.05	9.55	10.65
Merged-chr7-92884566-3	chr7	92884465	92884665	+	749.399963	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	9312.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	8.08	6.04	6.28	9.65	13.91	7.53	6.98	12.95	17.31	18.58	12.06	7.52
Merged-chr17-84203338-2	chr17	84203225	84203425	+	749.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-15378.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.02	8.8	9.13	2.41	5.32	15.37	6.98	4.74	2.36	6.53	2.51	0.0
Merged-chr11-60305777-2	chr11	60305672	60305872	+	749.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	47133.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	4.04	12.32	14.26	16.09	8.18	6.27	4.65	6.5	8.85	1.51	4.52	6.27
Merged-chr11-78277493-2	chr11	78277381	78277581	+	749.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-13360.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	8.88	6.54	9.13	8.45	15.14	7.53	9.97	17.27	12.78	13.56	5.53	3.76
Merged-chr4-134923024-3	chr4	134922919	134923119	+	749.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-606.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.06	11.57	8.56	4.83	6.14	9.41	10.3	6.79	10.42	12.55	14.07	7.52
Merged-chr2-180227784-3	chr2	180227631	180227831	+	749.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1872.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	9.29	7.29	8.56	8.85	6.14	5.96	7.97	4.93	11.21	11.05	7.03	6.27
Merged-chr8-33601914-2	chr8	33601822	33602022	+	749.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	2301.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	1.62	4.02	7.42	3.62	4.5	1.88	6.64	5.5	10.82	16.07	28.14	14.41
Merged-chr19-53800219-1	chr19	53800119	53800319	+	749.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-92012.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.81	1.76	3.42	2.41	0.82	4.39	2.66	3.06	11.41	7.53	14.07	9.71
Merged-chr5-74252846-1	chr5	74252746	74252946	+	749.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	57520.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	2.42	1.01	4.56	1.21	6.95	5.96	6.64	8.13	0.2	0.5	3.52	2.82
Merged-chr9-65364371-2	chr9	65364265	65364465	+	749.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	3305.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	10.5	6.54	3.42	4.83	8.18	16.93	18.27	15.81	3.15	4.52	3.01	0.94
Merged-chr2-38286651-2	chr2	38286532	38286732	+	749.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	752.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.44	7.04	6.28	7.24	12.27	7.84	9.63	10.04	11.41	9.04	10.05	8.14
Merged-chr6-116014333-2	chr6	116014241	116014441	+	749.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19336.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.85	4.78	4.56	4.02	7.36	14.11	9.97	8.89	9.64	4.02	9.55	10.34
Merged-chr13-89385822-2	chr13	89385711	89385911	+	749.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154825.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.83	2.52	5.13	2.41	6.14	3.76	3.65	6.11	13.96	11.05	11.56	10.02
Merged-chr18-9494038-2	chr18	9493920	9494120	+	749.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43866.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	8.88	6.04	11.98	5.63	19.23	6.9	16.28	20.38	12.19	4.52	4.02	10.34
Merged-chr19-61198716-2	chr19	61198626	61198826	+	749.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-22417.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	29.88	28.17	35.37	22.52	9.82	10.03	12.62	0.48	8.65	7.53	4.02	17.86
Merged-chr9-32725303-2	chr9	32725209	32725409	+	749.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	29267.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.86	4.28	3.42	6.03	9.41	13.48	7.31	5.1	14.75	9.54	4.52	0.63
Merged-chr13-45600688-2	chr13	45600580	45600780	+	749.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	ORR1F|LTR|ERVL-MaLR	93236.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	9.69	10.06	11.41	7.64	11.45	22.58	7.31	12.98	6.29	6.03	6.53	1.25
Merged-chr16-89773991-3	chr16	89773893	89774093	+	749.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44359.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	8.08	5.53	9.13	4.83	6.55	14.11	3.99	11.64	14.55	10.04	18.59	9.08
Merged-chr14-109478431-2	chr14	109478322	109478522	+	749.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR80A|LTR|ERVL	-564183.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.81	2.52	3.42	0.8	11.45	18.5	7.97	24.73	14.36	6.53	11.56	8.14
Merged-chr14-40894777-3	chr14	40894699	40894899	+	749.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1834.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	6.06	8.55	3.42	8.85	13.09	12.54	10.96	9.81	14.55	9.04	15.58	6.58
Merged-chr3-127498869-3	chr3	127498793	127498993	+	749.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001327938, exon 1 of 48)	5' UTR (NM_001327938, exon 1 of 48)	222.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.85	7.04	2.28	7.64	2.86	2.82	6.31	6.22	16.33	26.11	21.61	20.99
Merged-chr2-104816239-4	chr2	104815932	104816132	+	749.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123327, intron 1 of 11)	intron (NM_001123327, intron 1 of 11)	664.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	4.85	6.04	4.56	4.83	8.59	2.51	6.64	9.84	6.88	4.02	7.54	9.71
Merged-chr13-95481605-2	chr13	95481525	95481725	+	749.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2970.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	6.06	8.3	4.56	8.45	7.36	9.09	0.66	5.27	24.39	19.58	23.11	9.71
Merged-chr2-30246033-2	chr2	30245936	30246136	+	749.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8267.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	8.88	6.29	2.28	2.41	10.64	10.35	6.31	7.21	13.57	5.52	5.53	5.95
Merged-chr18-3890085-3	chr18	3889983	3890183	+	749.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	-275749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	13.73	13.08	12.55	16.49	9.0	13.8	5.65	7.01	17.7	26.61	18.09	6.89
Merged-chr11-48855647-3	chr11	48855528	48855728	+	749.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15792.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	8.88	4.78	3.99	13.67	6.55	11.6	3.99	4.79	10.42	4.52	18.09	6.27
Merged-chr14-63129838-2	chr14	63129766	63129966	+	749.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7404.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.27	9.81	6.28	7.64	12.27	12.86	7.31	10.12	6.29	10.04	10.05	14.1
Merged-chr7-38074025-2	chr7	38073932	38074132	+	749.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33458.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.85	5.53	4.56	6.03	7.77	5.33	6.98	9.93	10.82	8.03	5.53	12.22
Merged-chrX-13720577-2	chrX	13720488	13720688	+	749.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 1 of 4)	intron (NR_037311, intron 1 of 4)	735.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	10.09	9.06	9.7	10.05	10.23	18.19	8.97	17.27	5.51	6.53	26.63	5.64
Merged-chr7-144932927-2	chr7	144932839	144933039	+	749.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007631, intron 4 of 4)	intron (NM_007631, intron 4 of 4)	6986.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	15.75	8.55	10.27	10.46	9.41	13.8	6.98	5.92	20.85	5.52	12.56	13.47
Merged-chr17-42837319-2	chr17	42837224	42837424	+	749.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009847, intron 4 of 17)	intron (NM_009847, intron 4 of 17)	39100.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.46	3.77	9.13	11.66	11.45	2.2	8.3	11.07	9.24	8.03	12.06	7.21
Merged-chr7-90060093-3	chr7	90059993	90060193	+	749.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30934.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.48	3.27	11.41	6.44	13.91	10.35	5.31	5.21	13.96	14.06	9.55	3.13
Merged-chr2-92455887-3	chr2	92455757	92455957	+	749.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	3937.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	9.69	5.53	6.28	4.02	12.27	8.78	6.64	12.84	11.01	5.52	12.56	5.64
Merged-chr17-46523258-3	chr17	46523133	46523333	+	749.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081335, intron 17 of 40)	intron (NM_001081335, intron 17 of 40)	23155.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	4.85	9.81	4.56	8.45	6.55	11.6	13.29	7.43	3.93	8.54	14.57	7.52
Merged-chr6-49258011-2	chr6	49257919	49258119	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	6033.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	8.48	11.32	1.14	3.22	0.0	0.0	0.0	0.34	9.05	5.02	16.58	5.64
Merged-chr8-119813648-1	chr8	119813548	119813748	+	749.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	RSINE1|SINE|B4	26931.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.86	3.02	6.85	9.25	8.59	0.63	4.98	8.05	9.83	15.57	12.06	11.9
Merged-chr4-95637271-1	chr4	95637171	95637371	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	57850.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.63	0.5	0.57	0.0	6.14	6.9	7.97	8.02	0.79	1.0	0.5	0.31
Merged-chr2-90573607-1	chr2	90573507	90573707	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	7040.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.46	3.77	4.56	0.0	5.73	7.53	1.33	2.02	12.19	6.03	5.53	6.58
Merged-chr10-117807676-2	chr10	117807568	117807768	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-14963.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.42	1.76	1.14	8.04	4.5	8.15	10.96	8.72	6.88	8.03	6.03	6.89
Merged-chr2-33736984-1	chr2	33736884	33737084	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-68832.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	6.06	6.04	7.99	5.23	5.32	6.59	2.66	6.08	2.36	9.54	7.03	6.58
Merged-chr11-50275025-1	chr11	50274925	50275125	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	17311.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	4.04	4.28	4.56	4.83	9.41	4.08	2.99	5.3	5.7	2.51	0.5	2.82
Merged-chr6-96116882-1	chr6	96116782	96116982	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3728.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.5	0.0	1.21	8.59	4.7	1.66	4.6	0.79	3.01	0.0	4.07
Merged-chr6-113864963-1	chr6	113864863	113865063	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	26576.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.5	5.7	6.44	2.05	1.57	2.66	4.68	0.79	1.0	5.02	4.07
Merged-chr1-9630269-1	chr1	9630169	9630369	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015470, intron 1 of 4)	intron (NR_015470, intron 1 of 4)	823.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	3.23	1.51	3.99	3.62	7.36	4.7	1.66	9.93	3.34	4.02	4.52	3.13
Merged-chr13-119283616-1	chr13	119283516	119283716	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	125395.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	9.29	3.02	6.28	8.04	7.36	5.96	1.33	10.12	10.62	4.52	16.58	7.83
Merged-chr2-132575419-1	chr2	132575319	132575519	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355651, intron 1 of 19)	RSINE1|SINE|B4	2829.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	5.65	3.02	2.28	3.22	5.32	2.2	5.98	11.07	3.54	3.01	7.54	2.51
Merged-chr17-12031473-3	chr17	12031435	12031635	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-87749.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	8.48	5.28	3.99	7.64	2.05	3.45	2.33	2.36	5.31	5.02	4.52	6.89
Merged-chr8-10990984-1	chr8	10990884	10991084	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-16866.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	4.04	2.26	1.71	6.84	6.95	12.54	5.31	6.28	2.36	4.02	8.04	3.13
Merged-chr12-8347854-2	chr12	8347737	8347937	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34404.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	2.02	3.52	2.28	4.83	2.86	6.9	4.65	9.5	6.29	10.04	7.03	9.71
Merged-chr17-48039660-1	chr17	48039560	48039760	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1367.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	4.85	4.02	1.71	1.61	8.18	10.03	10.63	5.21	10.42	3.01	7.03	5.01
Merged-chr2-70662316-1	chr2	70662216	70662416	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	807.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	6.86	1.76	1.71	1.61	8.59	4.7	2.33	6.73	4.52	8.54	7.03	4.7
Merged-chr15-35305237-1	chr15	35305137	35305337	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9125.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.81	2.26	2.85	2.41	0.82	10.03	5.65	7.4	2.36	0.5	3.52	4.07
Merged-chr14-67932827-2	chr14	67932721	67932921	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	751.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	10.5	5.79	5.13	6.03	11.05	4.08	9.97	9.73	2.75	6.03	9.55	6.27
Merged-chr6-98985643-2	chr6	98985542	98985742	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	42656.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.44	4.53	7.99	11.26	9.82	1.88	13.29	16.01	10.23	1.51	9.55	9.08
Merged-chr8-67917302-2	chr8	67917185	67917385	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	-6339.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	8.08	9.81	4.56	12.87	10.23	5.33	1.33	7.65	6.69	8.03	6.03	5.64
Merged-chr9-20976419-1	chr9	20976319	20976519	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010333, intron 1 of 1)	CpG	374.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	5.65	19.87	9.13	12.87	13.09	8.78	11.96	12.06	10.82	12.05	18.59	10.34
Merged-chr2-146386408-1	chr2	146386308	146386508	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	125596.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	1.62	1.01	3.42	6.44	5.32	6.59	7.64	6.87	0.79	1.0	0.0	0.0
Merged-chr8-33607631-1	chr8	33607531	33607731	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	ID_B1|SINE|B4	8010.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.23	2.52	0.0	0.8	0.82	1.88	3.32	4.01	5.51	5.02	4.02	0.63
Merged-chr4-89052052-1	chr4	89051952	89052152	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033533, intron 1 of 2)	intron (NR_033533, intron 1 of 2)	1745.0	NR_033533	100040617.0	Mm.171720	NR_033533	ENSMUSG00000085183	Wincr1	Gm12603	WNT induced non-coding RNA 1	ncRNA	3.23	2.01	5.7	6.84	2.05	5.64	6.64	8.78	4.33	1.0	10.55	1.57
Merged-chr13-94161888-1	chr13	94161788	94161988	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	104092.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.02	4.02	2.85	2.82	2.86	5.64	5.65	5.78	1.38	5.52	3.01	1.25
Merged-chr4-63429856-1	chr4	63429756	63429956	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001008791, intron 7 of 12)	intron (NM_001008791, intron 7 of 12)	-26411.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	10.5	9.31	1.14	3.62	0.41	4.7	2.66	1.32	3.15	1.0	4.02	1.88
Merged-chr17-27825711-1	chr17	27825611	27825811	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-5169.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	9.29	5.53	3.42	2.41	3.27	3.45	5.65	6.98	9.83	7.03	8.04	2.82
Merged-chr2-91457833-1	chr2	91457733	91457933	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172668, intron 1 of 37)	CpG	302.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	5.25	5.79	2.28	0.4	4.09	1.88	6.64	3.79	6.69	6.03	4.52	5.01
Merged-chr4-124657091-1	chr4	124656991	124657191	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-555.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	6.86	7.29	4.56	4.02	6.95	5.96	5.98	8.78	7.87	5.52	11.56	4.7
Merged-chr12-112990863-1	chr12	112990763	112990963	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028193, intron 2 of 17)	PB1D10|SINE|Alu	9758.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	4.04	10.06	13.69	5.63	3.68	4.39	0.0	1.49	3.15	1.0	4.52	0.63
Merged-chr12-8301957-2	chr12	8301803	8302003	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	51.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	6.46	5.79	1.14	5.63	4.91	2.2	6.31	3.17	8.06	3.01	14.07	7.52
Merged-chrX-159510302-1	chrX	159510202	159510402	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-22366.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	12.52	8.05	4.56	5.23	6.55	18.81	2.66	2.41	4.13	3.51	5.02	4.07
Merged-chr2-3471584-1	chr2	3471484	3471684	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027509, intron 1 of 4)	PB1D11|SINE|Alu	3402.0	NM_022724	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	5.65	1.76	1.71	2.41	1.64	3.76	6.64	6.67	7.08	2.51	6.03	5.33
Merged-chr2-49748786-3	chr2	49748685	49748885	+	748.994446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 21 of 25)	MIR|SINE|MIR	-38901.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	12.11	8.05	11.41	9.25	8.18	15.37	7.97	10.85	12.39	18.58	19.6	10.96
Merged-chr4-43558840-3	chr4	43558755	43558955	+	748.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	3728.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	10.5	7.04	9.7	9.65	8.18	15.37	10.96	9.95	6.69	10.54	1.51	5.01
Merged-chr6-17629947-3	chr6	17629851	17630051	+	748.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7059.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.27	8.3	11.98	4.02	13.91	10.35	2.33	5.75	21.05	14.06	21.61	5.95
Merged-chr7-3962195-3	chr7	3962090	3962290	+	748.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46689.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	13.33	8.55	18.25	11.26	19.23	7.21	9.3	15.76	24.19	13.05	15.58	5.33
Merged-chr14-103535854-3	chr14	103535737	103535937	+	748.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 4 of 30)	intron (NM_022886, intron 4 of 30)	22496.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	8.88	7.55	2.28	6.84	16.36	18.5	12.95	16.01	9.05	10.54	12.06	7.83
Merged-chr15-96328873-3	chr15	96328766	96328966	+	748.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175251, intron 3 of 20)	B2_Mm1a|SINE|B2	41344.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	10.5	3.77	6.85	5.63	23.32	13.48	6.64	9.17	12.19	16.07	10.05	5.64
Merged-chr14-62243440-2	chr14	62243342	62243542	+	748.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49537.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	8.08	6.04	18.25	5.63	12.27	14.74	14.62	13.26	10.03	4.02	18.09	7.83
Merged-chr10-80931930-3	chr10	80931827	80932027	+	748.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008655, exon 4 of 4)	3' UTR (NM_008655, exon 4 of 4)	1836.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	13.33	9.06	6.28	4.42	6.95	9.41	11.96	3.64	13.37	8.03	11.56	5.95
Merged-chr1-23187951-3	chr1	23187837	23188037	+	748.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84332.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	13.73	5.03	9.13	8.45	16.36	9.72	18.6	11.8	13.77	13.05	12.06	9.71
Merged-chr11-64610867-3	chr11	64610715	64610915	+	748.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-174141.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	6.86	3.02	15.4	2.01	10.23	6.27	6.31	6.62	7.67	7.53	5.02	4.39
Merged-chr17-65724450-2	chr17	65724351	65724551	+	748.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	48301.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.25	3.02	2.85	13.67	8.59	12.23	11.29	14.24	10.42	8.03	10.55	8.46
Merged-chr13-74018027-2	chr13	74017921	74018121	+	748.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	8602.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.63	7.04	18.83	12.47	8.18	0.0	3.99	7.35	4.72	1.0	6.53	8.14
Merged-chr7-126780748-2	chr7	126780616	126780816	+	748.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-767.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	3.23	7.29	4.56	4.02	8.59	7.21	4.32	4.54	7.08	8.03	9.04	6.89
Merged-chr4-155653306-2	chr4	155653211	155653411	+	748.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001320235)	promoter-TSS (NM_001320235)	-21.0	NM_001320235	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	13.73	10.31	6.85	10.46	6.14	9.09	4.32	6.64	6.1	7.03	7.54	4.07
Merged-chr2-60369779-3	chr2	60369697	60369897	+	748.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013825, intron 2 of 34)	intron (NM_013825, intron 2 of 34)	13434.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	6.46	11.57	11.41	4.42	3.27	14.74	8.3	4.01	7.67	10.54	14.57	1.57
Merged-chr4-53180693-3	chr4	53180584	53180784	+	748.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20789.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	14.54	9.06	3.99	8.85	14.32	10.66	9.97	5.52	12.0	16.57	14.57	5.95
Merged-chr8-106561288-2	chr8	106561175	106561375	+	748.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25868.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	11.31	5.03	7.99	1.21	12.27	9.09	5.31	6.62	11.21	3.51	13.57	6.58
Merged-chr2-127322744-3	chr2	127322654	127322854	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13405.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	4.04	6.04	14.26	7.64	5.32	8.47	10.63	6.62	15.34	11.05	15.58	11.28
Merged-chr19-40626283-3	chr19	40626184	40626384	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1MA4|LINE|L1	13918.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.27	8.3	16.54	15.28	24.96	14.74	12.95	26.66	10.62	9.04	9.04	8.77
Merged-chr1-184023271-3	chr1	184023176	184023376	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10722.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	11.71	4.78	7.99	3.22	9.0	12.86	7.31	9.67	13.37	8.54	11.56	6.89
Merged-chr10-11492154-3	chr10	11492051	11492251	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-117073.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	20.19	21.63	12.55	15.28	14.32	9.41	4.65	20.83	13.96	16.07	24.62	18.48
Merged-chr13-24613169-1	chr13	24613069	24613269	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-1437.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	2.02	3.27	11.41	4.83	8.18	5.64	5.98	11.8	4.13	4.02	7.54	2.19
Merged-chr9-122230890-2	chr9	122230778	122230978	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	43150.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	1.62	3.52	0.0	4.02	9.41	6.59	1.33	5.47	9.83	17.07	20.1	10.96
Merged-chr7-126117101-1	chr7	126117001	126117201	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028816, intron 14 of 23)	L1MC3|LINE|L1	-34690.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	8.08	3.52	1.14	6.44	9.0	5.96	2.99	8.13	7.28	3.51	7.54	6.58
Merged-chr4-142085203-2	chr4	142085098	142085298	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-894.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	4.04	1.01	7.99	5.23	0.82	2.51	6.64	6.79	9.05	7.53	9.55	6.89
Merged-chr13-69391734-2	chr13	69391632	69391832	+	748.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142132.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.23	0.5	0.0	0.0	5.73	2.82	4.32	5.13	16.92	19.08	14.57	8.46
Merged-chr17-86063692-2	chr17	86063586	86063786	+	748.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	81489.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	5.25	6.79	6.85	8.04	4.09	12.86	4.32	4.65	14.16	11.05	16.08	5.95
Merged-chr15-13173732-2	chr15	13173635	13173835	+	748.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007666)	promoter-TSS (NM_007666)	-60.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	11.71	7.04	8.56	16.09	6.95	9.72	11.96	9.73	3.15	14.56	7.03	3.45
Merged-chr11-101964024-4	chr11	101963880	101964080	+	748.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024449, exon 2 of 2)	exon (NM_024449, exon 2 of 2)	3035.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	8.88	3.52	2.28	14.08	10.64	3.45	4.98	8.13	9.24	10.54	7.54	3.76
Merged-chr14-51844112-3	chr14	51844001	51844201	+	748.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9667.0	NM_053111	93719.0	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	13.33	8.3	11.41	17.7	4.91	13.17	12.95	15.48	4.33	5.02	10.55	7.21
Merged-chr7-92962019-2	chr7	92961931	92962131	+	748.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	86778.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	4.04	4.53	9.13	6.03	9.0	6.59	8.97	8.69	10.62	12.05	18.09	8.14
Merged-chr11-61564804-2	chr11	61564704	61564904	+	748.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	14883.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	5.65	7.8	5.7	12.47	12.27	9.41	15.61	12.11	2.75	12.55	8.54	6.89
Merged-chr4-63594039-2	chr4	63593919	63594119	+	748.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6745.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	5.65	3.27	7.99	4.83	4.5	5.02	5.65	10.49	11.21	7.53	16.08	8.77
Merged-chr2-130501829-2	chr2	130501731	130501931	+	748.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	51553.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	11.31	6.04	11.41	8.04	15.14	8.78	9.63	18.56	7.47	6.03	7.54	13.16
Merged-chr2-79131439-2	chr2	79131333	79131533	+	748.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123993.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	8.08	4.53	5.13	2.82	16.36	8.47	10.96	9.98	9.83	16.57	14.07	0.94
Merged-chr17-68004105-3	chr17	68003991	68004191	+	748.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	17.0	NM_172964	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	11.31	20.37	18.25	8.85	6.14	6.9	8.64	9.67	3.34	8.03	11.56	2.82
Merged-chr6-57570587-3	chr6	57570464	57570664	+	748.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10428.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	6.06	6.54	6.28	18.5	9.82	7.53	11.63	15.62	12.39	9.54	15.58	10.96
Merged-chr3-59210208-3	chr3	59210100	59210300	+	748.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028808, exon 2 of 2)	exon (NM_028808, exon 2 of 2)	682.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	8.08	16.35	7.99	10.05	10.23	26.03	5.98	3.39	10.03	19.58	13.57	6.89
Merged-chr8-120739663-2	chr8	120739527	120739727	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 1 of 8)	intron (NM_001301811, intron 1 of 8)	988.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	8.48	5.79	10.27	7.24	6.55	4.08	2.66	10.51	6.69	4.52	5.53	9.08
Merged-chr15-64223634-1	chr15	64223534	64223734	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89039.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.85	1.51	1.14	6.44	6.55	4.39	4.32	12.31	2.16	3.01	4.02	2.82
Merged-chr5-100635884-2	chr5	100635786	100635986	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38370.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.25	1.51	11.41	4.02	3.27	5.02	5.98	6.76	12.98	9.54	6.53	4.7
Merged-chr6-148478756-2	chr6	148478641	148478841	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34389.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	8.08	3.52	7.99	12.47	4.09	4.7	6.31	7.6	4.92	6.53	14.07	1.57
Merged-chr3-145670955-2	chr3	145670849	145671049	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-20964.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.63	3.02	0.0	1.61	5.73	5.33	2.99	9.48	17.51	10.04	12.56	10.34
Merged-chr19-44118016-2	chr19	44117921	44118121	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-10544.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	5.65	10.82	7.99	10.05	3.68	5.96	3.32	11.5	12.19	12.05	6.03	12.22
Merged-chr10-80018886-2	chr10	80018777	80018977	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027521)	promoter-TSS (NM_027521)	-798.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	5.25	7.04	8.56	4.02	6.95	9.72	4.65	13.37	13.18	4.52	3.01	9.4
Merged-chr8-121930202-3	chr8	121930103	121930303	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	RLTR20C2_MM|LTR|ERVK	14709.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	14.54	9.06	13.69	15.69	10.64	15.68	13.95	19.29	8.85	4.02	14.57	6.58
Merged-chr4-49626772-2	chr4	49626682	49626882	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5278.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	6.46	5.03	2.85	2.82	9.82	7.53	9.97	11.44	8.85	11.05	11.05	2.51
Merged-chr16-32803713-2	chr16	32803621	32803821	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6286.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	6.46	5.53	10.84	10.46	4.5	11.29	11.29	12.34	4.52	4.02	7.03	1.88
Merged-chr1-161894250-2	chr1	161894141	161894341	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17559.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	10.9	7.8	21.11	8.85	7.36	4.08	6.31	9.0	4.92	6.53	13.57	5.33
Merged-chr2-51148612-3	chr2	51148508	51148708	+	748.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028810, intron 1 of 4)	intron (NM_028810, intron 1 of 4)	503.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	18.98	19.12	9.7	6.03	4.09	9.41	1.99	6.73	8.06	9.04	9.04	2.51
Merged-chr15-64047785-3	chr15	64047673	64047873	+	748.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	11991.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.25	7.8	7.99	2.41	15.14	11.92	4.32	10.88	10.23	7.53	12.56	5.64
Merged-chr5-137072352-2	chr5	137072250	137072450	+	748.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-78.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.23	5.03	2.28	4.02	7.77	17.25	7.31	12.36	11.21	16.07	4.02	6.58
Merged-chr2-73566281-3	chr2	73566177	73566377	+	748.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007389, exon 9 of 9)	exon (NM_007389, exon 9 of 9)	14061.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	13.73	7.55	2.28	4.83	13.09	10.35	5.65	6.56	14.55	8.03	12.06	5.64
Merged-chr9-64786065-3	chr9	64785959	64786159	+	748.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24952.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	10.09	8.05	11.41	19.31	16.77	11.92	8.64	11.97	12.78	17.57	12.56	8.46
Merged-chr1-93486726-3	chr1	93486634	93486834	+	748.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159719, intron 1 of 12)	B2_Mm1a|SINE|B2	7673.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	6.46	7.04	21.11	15.28	10.23	9.41	11.29	8.5	16.33	11.05	3.01	9.08
Merged-chr11-63047167-2	chr11	63047043	63047243	+	748.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14516.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	8.48	12.32	7.42	10.86	6.95	5.33	2.99	9.56	7.08	5.52	6.53	4.39
Merged-chr8-33722242-2	chr8	33722167	33722367	+	748.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9647.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	7.67	5.79	2.85	6.44	5.32	7.84	1.0	6.98	5.51	6.03	7.54	5.01
Merged-chr17-57100581-2	chr17	57100465	57100665	+	748.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033508, intron 3 of 3)	ID_B1|SINE|B4	-4820.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	4.04	2.77	11.41	0.0	3.27	8.47	1.0	6.76	12.59	6.03	11.05	10.34
Merged-chr8-25043631-2	chr8	25043518	25043718	+	748.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 11 of 11)	MIR|SINE|MIR	-4656.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	6.46	1.26	5.7	6.03	9.82	10.35	9.97	21.11	8.06	9.54	18.59	8.14
Merged-chr11-116109022-3	chr11	116108938	116109138	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205081, intron 1 of 5)	intron (NM_001205081, intron 1 of 5)	1197.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	10.09	6.54	3.42	5.23	9.82	9.72	2.99	3.93	7.67	8.54	7.03	4.39
Merged-chr1-155293630-3	chr1	155293548	155293748	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 11 of 14)	intron (NM_011273, intron 11 of 14)	123796.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	7.27	7.04	4.56	4.02	6.95	3.45	9.97	8.5	12.19	6.53	11.56	4.07
Merged-chr7-139296445-3	chr7	139296311	139296511	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47929.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	10.5	8.8	3.99	0.8	5.73	3.45	4.65	6.81	9.24	13.56	11.05	9.71
Merged-chr19-33043007-1	chr19	33042907	33043107	+	748.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-114105.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	5.65	2.77	5.7	3.22	6.55	5.64	5.65	8.19	5.11	6.53	6.03	2.82
Merged-chr6-71980684-1	chr6	71980584	71980784	+	748.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61844.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	2.83	3.52	2.28	2.82	8.18	6.27	7.97	17.13	6.49	8.03	11.05	4.39
Merged-chr7-132564991-3	chr7	132564884	132565084	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016978, intron 4 of 9)	intron (NM_016978, intron 4 of 9)	11414.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	9.29	6.79	14.26	14.48	6.55	4.7	8.64	12.0	15.54	11.05	18.59	1.88
Merged-chr11-79340215-3	chr11	79340105	79340305	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010897, intron 1 of 57)	CpG	313.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	12.52	6.54	10.27	4.83	8.18	12.23	3.32	5.44	17.31	18.08	14.07	12.22
Merged-chr6-33980910-6	chr6	33980804	33981004	+	748.325012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48544.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	1.62	2.52	0.0	4.02	3.27	0.94	6.31	1.99	9.64	8.03	4.52	6.27
Merged-chr14-55760310-3	chr14	55760227	55760427	+	748.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1101.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	17.36	14.59	7.99	6.03	14.73	11.29	4.98	9.73	18.29	10.54	12.56	8.46
Merged-chr13-95887734-2	chr13	95887639	95887839	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	4183.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.48	4.28	2.85	9.65	3.27	8.15	5.31	9.67	6.1	8.54	5.53	5.95
Merged-chr1-165188980-2	chr1	165188871	165189071	+	748.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	5462.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	5.65	8.8	6.28	3.22	4.5	12.54	2.99	5.38	16.33	8.54	23.62	9.4
Merged-chr2-31483123-3	chr2	31483017	31483217	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	12809.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	12.11	3.02	8.56	7.24	11.05	10.66	2.33	9.06	15.14	9.54	15.07	7.83
Merged-chr2-133499084-2	chr2	133498996	133499196	+	748.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53063.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.63	4.28	5.7	5.63	5.73	9.41	3.99	7.18	7.47	3.51	11.56	4.39
Merged-chr9-70832345-2	chr9	70832230	70832430	+	748.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102478.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	2.42	6.54	3.42	9.25	9.0	8.47	17.61	11.36	10.23	6.03	5.02	6.58
Merged-chr7-35157706-2	chr7	35157603	35157803	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28682.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	3.23	5.53	10.27	4.42	9.82	16.93	16.28	14.22	9.44	5.52	10.05	4.7
Merged-chr4-109431090-2	chr4	109430971	109431171	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145948, intron 9 of 17)	intron (NM_001145948, intron 9 of 17)	15424.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	11.71	7.55	17.11	14.88	2.45	8.15	5.65	6.9	4.52	6.53	4.52	7.52
Merged-chr2-52949470-3	chr2	52949349	52949549	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	91581.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	9.29	8.05	2.28	7.64	11.86	4.08	6.98	12.45	14.16	7.03	6.53	4.39
Merged-chr2-150915305-3	chr2	150915224	150915424	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 2 of 6)	RSINE1|SINE|B4	5730.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	6.06	9.06	10.27	7.64	8.59	14.11	4.65	7.79	12.59	11.55	8.54	7.21
Merged-chr11-20401006-3	chr11	20400881	20401081	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68268.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	14.13	9.81	10.84	7.24	11.86	6.59	6.98	11.47	8.85	8.03	6.03	4.7
Merged-chr8-123332873-3	chr8	123332768	123332968	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172287, exon 1 of 15)	exon (NM_172287, exon 1 of 15)	155.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	12.92	9.81	9.7	8.85	9.0	10.03	1.33	7.79	7.87	13.56	14.07	5.64
Merged-chr2-30061849-3	chr2	30061758	30061958	+	748.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	-138.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	25.04	10.31	5.13	2.01	15.96	10.03	14.28	8.78	10.23	11.05	10.05	5.33
Merged-chr3-81123655-3	chr3	81123561	81123761	+	748.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	87245.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	8.88	6.29	17.68	13.27	15.55	14.42	11.96	18.5	10.03	6.53	8.54	9.4
Merged-chr4-43267138-3	chr4	43267040	43267240	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177195)	promoter-TSS (NM_177195)	-19.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	8.48	9.81	11.98	10.05	7.77	17.25	5.65	9.7	9.44	3.01	10.55	8.14
Merged-chr1-36960284-3	chr1	36960194	36960394	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20767.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	8.48	6.79	5.13	8.85	11.86	8.78	1.0	6.73	17.11	5.52	14.07	5.64
Merged-chr4-149779110-3	chr4	149778939	149779139	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-4772.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	6.86	8.55	2.85	12.47	1.64	3.45	5.98	1.46	8.85	10.04	9.55	10.02
Merged-chr7-101379149-3	chr7	101379062	101379262	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1040.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	10.09	8.3	5.13	1.61	10.64	9.72	1.33	5.16	16.72	20.59	8.54	5.64
Merged-chr3-116614492-2	chr3	116614378	116614578	+	748.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_030016, exon 1 of 12)	5' UTR (NM_030016, exon 1 of 12)	109.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	5.25	5.53	6.28	12.87	5.32	10.98	10.3	16.74	4.13	7.53	5.53	2.82
Merged-chr15-98387802-2	chr15	98387709	98387909	+	748.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-8701.0	NM_147036	259038.0	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	4.85	5.53	4.56	5.23	11.45	19.44	11.63	7.18	15.14	11.05	15.58	7.52
Merged-chrX-134910535-2	chrX	134910443	134910643	+	748.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53354.0	NM_001289736	83454.0	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	2.42	6.54	8.56	7.64	6.55	9.09	17.94	11.72	11.6	10.04	8.54	9.4
Merged-chr9-3035905-2	chr9	3035786	3035986	+	748.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	2857.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	9.69	7.29	7.99	7.64	11.86	4.39	9.97	18.48	5.31	6.03	11.05	8.14
Merged-chr19-32789747-3	chr19	32789654	32789854	+	748.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	32177.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	12.52	7.55	15.4	5.63	9.82	5.33	6.64	17.72	9.44	5.02	13.06	6.89
Merged-chr16-95932381-3	chr16	95932274	95932474	+	748.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3297.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.46	8.55	14.26	11.26	11.86	8.78	8.97	12.95	6.29	6.03	11.05	16.6
Merged-chr8-64949407-2	chr8	64949299	64949499	+	748.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163747, intron 1 of 4)	ID_B1|SINE|B4	2214.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	2.83	1.51	2.28	4.42	0.82	6.59	8.97	8.24	9.05	7.53	2.51	5.95
Merged-chr16-17205201-3	chr16	17205086	17205286	+	748.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2949.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	9.69	7.8	7.42	6.84	10.64	7.21	3.32	5.02	26.16	8.03	12.56	12.22
Merged-chr3-67557928-3	chr3	67557824	67558024	+	748.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-24844.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	8.88	11.07	11.98	7.24	6.55	5.33	0.33	5.69	39.34	15.06	14.57	14.72
Merged-chr2-90631050-3	chr2	90630930	90631130	+	748.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46185.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	6.46	5.53	10.27	11.26	13.5	16.31	7.97	15.06	16.13	12.55	17.08	6.27
Merged-chr15-100681954-3	chr15	100681842	100682042	+	748.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 5 of 7)	B1_Mur2|SINE|Alu	5978.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	14.94	9.31	11.98	9.25	11.45	8.15	10.96	11.8	7.87	9.54	13.06	7.83
Merged-chr7-6173132-1	chr7	6173032	6173232	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028316, intron 1 of 3)	PB1D7|SINE|Alu	619.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	3.23	2.26	3.99	5.23	8.18	1.25	1.66	6.64	5.9	3.01	4.52	5.01
Merged-chr1-153996861-1	chr1	153996761	153996961	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	96932.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.06	2.01	11.41	2.41	4.91	6.9	1.0	5.44	7.87	6.53	7.03	1.25
Merged-chr8-115626567-2	chr8	115626481	115626681	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80313.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.25	3.77	2.28	2.82	14.73	5.96	11.63	9.87	6.49	11.05	8.04	6.27
Merged-chr4-32369157-1	chr4	32369057	32369257	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48278.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.42	3.02	2.28	4.42	3.68	3.76	5.65	6.5	2.56	0.0	7.03	1.25
Merged-chr18-80612111-2	chr18	80612032	80612232	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-67586.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	6.46	6.79	7.99	8.04	10.64	13.17	3.99	15.34	8.06	5.02	3.01	4.7
Merged-chr15-85010317-1	chr15	85010217	85010417	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6824.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	8.88	4.28	1.71	4.02	2.45	7.53	3.65	7.99	4.72	2.01	8.54	7.52
Merged-chr16-4728202-2	chr16	4728094	4728294	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	1833.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.85	1.01	7.99	4.02	12.27	10.35	2.99	8.21	12.0	12.55	4.52	8.77
Merged-chr2-145743462-1	chr2	145743362	145743562	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	42267.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	4.85	0.75	0.0	2.41	4.09	5.64	3.99	5.36	5.7	6.03	3.52	6.89
Merged-chr2-133021446-2	chr2	133021357	133021557	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75421.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	4.44	3.02	0.57	9.65	12.27	3.45	5.98	4.91	7.87	2.51	12.06	5.95
Merged-chr2-160362848-1	chr2	160362748	160362948	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010658)	TTS (NM_010658)	4217.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.23	5.28	1.14	1.61	3.68	3.76	8.3	4.79	4.33	5.02	8.04	1.88
Merged-chr5-100513642-2	chr5	100513544	100513744	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4665.0	NM_001359203	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	2.83	5.53	15.4	7.64	7.36	5.96	7.97	6.42	5.11	4.52	15.07	4.07
Merged-chr17-85393240-1	chr17	85393140	85393340	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028576, intron 4 of 10)	intron (NM_028576, intron 4 of 10)	225156.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.81	1.51	0.0	0.0	4.09	6.27	3.32	6.31	7.87	5.52	4.02	3.76
Merged-chr11-32339404-1	chr11	32339304	32339504	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8407.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	8.48	7.29	7.42	0.0	2.45	0.63	1.66	1.07	2.56	1.0	0.5	2.82
Merged-chr12-80242843-1	chr12	80242743	80242943	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	ID_B1|SINE|B4	17528.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	2.02	1.76	2.28	4.42	0.82	4.39	3.99	7.37	5.51	2.01	0.5	3.13
Merged-chr11-19021150-1	chr11	19021050	19021250	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2181.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.04	3.77	3.42	7.64	6.95	6.27	5.98	6.59	3.15	2.51	7.54	7.52
Merged-chr17-74868426-2	chr17	74868353	74868553	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-137076.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	2.02	3.02	7.42	1.61	7.36	5.33	3.65	2.5	11.41	11.55	13.06	6.58
Merged-chr2-91959132-1	chr2	91959032	91959232	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	4431.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.27	3.02	4.56	2.01	8.18	5.64	2.33	7.4	6.49	6.53	6.03	6.89
Merged-chr12-21286864-1	chr12	21286764	21286964	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008403)	promoter-TSS (NM_008403)	567.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	5.65	3.52	6.28	2.41	7.36	8.78	4.32	6.84	7.28	7.53	10.55	6.58
Merged-chr10-18998314-1	chr10	18998214	18998414	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR34B_MM|LTR|ERVK	13649.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.08	9.31	1.14	0.0	1.23	1.88	0.66	0.9	1.38	1.0	0.5	0.63
Merged-chr3-56270589-1	chr3	56270489	56270689	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER31A|LTR|ERV1	-86888.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	3.42	0.0	3.68	9.09	2.33	5.52	3.93	1.0	1.0	3.45
Merged-chr7-45453589-2	chr7	45453586	45453786	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030678, intron 14 of 15)	B3A|SINE|B2	6200.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	6.46	4.02	12.55	4.42	4.91	5.02	2.99	0.93	3.15	2.51	12.56	4.7
Merged-chr7-142356347-1	chr7	142356247	142356447	+	748.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	15912.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	5.65	4.28	9.7	2.41	2.45	0.63	1.0	4.82	3.34	12.55	15.07	2.82
Merged-chr6-3184052-1	chr6	3183952	3184152	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104467.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	5.65	4.78	5.13	8.85	3.68	9.09	4.98	5.55	5.11	6.53	2.51	0.94
Merged-chr12-111737570-1	chr12	111737470	111737670	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	Lx8b|LINE|L1	-21279.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	12.52	20.37	7.99	15.28	5.32	4.39	1.33	3.48	3.15	3.01	7.03	0.94
Merged-chr5-77386456-1	chr5	77386356	77386556	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21589.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.4	2.01	0.0	0.0	3.68	2.82	1.0	1.74	0.79	2.01	2.01	1.57
Merged-chr4-107277067-3	chr4	107276955	107277155	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355460, intron 4 of 5)	intron (NM_001355460, intron 4 of 5)	23152.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	6.06	13.08	7.99	12.07	14.32	6.59	5.98	8.5	7.67	6.53	9.55	5.01
Merged-chr10-8753610-1	chr10	8753510	8753710	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	132460.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.06	5.79	5.7	2.41	2.86	6.27	3.32	5.38	3.74	1.0	4.52	5.95
Merged-chr15-8642486-1	chr15	8642386	8642586	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148938, intron 7 of 9)	intron (NM_148938, intron 7 of 9)	68321.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.42	2.52	1.14	2.41	5.32	4.7	5.98	4.91	5.9	3.51	5.02	2.51
Merged-chr8-36761977-1	chr8	36761877	36762077	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-28923.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	7.27	4.78	6.85	5.63	3.68	3.14	5.65	11.8	1.18	1.0	8.54	2.19
Merged-chr4-152140650-2	chr4	152140549	152140749	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207687, intron 2 of 15)	intron (NM_207687, intron 2 of 15)	-4324.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	5.65	3.27	7.99	7.24	4.09	12.54	4.65	7.4	14.75	10.54	15.07	10.02
Merged-chr4-105239758-1	chr4	105239658	105239858	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82411.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.65	3.52	4.56	6.84	5.73	4.39	10.96	7.37	6.49	6.53	14.07	3.13
Merged-chr17-47759788-1	chr17	47759688	47759888	+	748.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	21857.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	8.88	5.28	1.71	2.82	9.0	17.56	9.3	11.61	11.21	6.53	8.04	6.89
Merged-chr19-6995545-2	chr19	6995435	6995635	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	502.0	NM_026675	68323.0	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	11.71	7.8	1.14	5.23	7.36	5.02	2.66	8.72	4.13	7.53	5.02	3.45
Merged-chr11-54921797-1	chr11	54921697	54921897	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18943.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	2.83	4.02	2.28	6.44	9.41	0.63	3.99	8.52	5.51	6.03	0.5	5.64
Merged-chr9-89220985-3	chr9	89220919	89221119	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	9635.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	6.46	4.02	12.55	11.66	22.09	14.11	31.89	27.28	5.9	4.02	8.54	6.58
Merged-chr16-44757317-1	chr16	44757217	44757417	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8419.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	2.42	2.77	4.56	2.41	9.0	5.64	6.98	10.77	5.11	4.52	4.52	5.33
Merged-chr10-96751092-1	chr10	96750992	96751192	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	134091.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.04	0.0	6.85	4.02	11.45	5.96	6.31	8.97	4.92	7.53	5.53	1.25
Merged-chr7-110250885-3	chr7	110250803	110251003	+	747.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 2 of 11)	L1MB8|LINE|L1	29200.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	12.52	8.8	4.56	13.67	14.32	6.9	6.31	11.78	8.06	11.05	7.54	11.28
Merged-chr12-14152113-2	chr12	14152004	14152204	+	747.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-66.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	2.83	0.75	0.0	0.0	10.23	6.27	4.32	7.65	11.41	11.05	19.09	10.02
Merged-chr6-84737139-3	chr6	84737037	84737237	+	747.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-143229.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	12.11	7.55	9.13	7.24	4.5	9.72	2.99	12.64	7.47	11.55	13.57	3.45
Merged-chr2-163699629-3	chr2	163699531	163699731	+	747.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	5594.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	11.31	3.27	17.11	17.7	8.59	5.33	9.63	15.03	7.47	7.03	10.05	3.45
Merged-chr5-122108284-3	chr5	122108177	122108377	+	747.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289809, intron 11 of 11)	intron (NM_001289809, intron 11 of 11)	7326.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	9.29	14.59	7.99	9.25	13.09	21.64	8.97	8.3	9.83	6.03	19.09	6.89
Merged-chr17-21845843-2	chr17	21845744	21845944	+	747.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-85.0	NM_029281	75424.0	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	4.44	3.27	2.85	6.84	12.68	6.59	13.29	7.15	9.44	6.03	11.05	2.51
Merged-chr2-158379904-3	chr2	158379815	158380015	+	747.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175692, intron 3 of 4)	B2_Mm2|SINE|B2	4277.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	13.73	12.58	9.7	9.65	11.45	7.21	5.31	9.87	16.52	14.06	8.54	10.02
Merged-chr10-39261741-2	chr10	39261649	39261849	+	747.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97955.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	11.31	9.06	9.13	5.23	14.73	11.92	7.64	5.27	8.06	1.51	10.55	4.07
Merged-chr8-35658430-2	chr8	35658335	35658535	+	747.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-69415.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	9.69	6.79	2.28	12.07	8.59	9.09	3.99	13.18	4.72	2.01	6.53	1.25
Merged-chr6-24530322-3	chr6	24530219	24530419	+	747.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	2175.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	15.34	4.53	7.42	16.09	10.64	16.62	6.98	9.93	7.08	13.05	23.11	5.95
Merged-chr3-60437887-3	chr3	60437808	60438008	+	747.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34922.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.25	6.04	8.56	12.87	10.23	10.03	6.64	13.63	11.8	4.52	15.58	6.58
Merged-chr6-85155323-3	chr6	85155216	85155416	+	747.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-17552.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	1.62	11.32	10.27	13.27	5.73	2.82	11.63	9.73	4.13	4.52	4.52	7.21
Merged-chr1-88265097-2	chr1	88264992	88265192	+	747.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	4316.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	5.25	4.02	9.7	4.83	16.36	6.9	6.98	11.27	6.88	4.52	10.55	15.66
Merged-chr2-18028729-3	chr2	18028619	18028819	+	747.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028378, exon 1 of 1)	non-coding (NR_028378, exon 1 of 1)	1470.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	10.9	12.83	5.13	10.05	11.05	7.21	9.3	8.05	11.21	12.55	7.54	7.52
Merged-chr14-22073596-2	chr14	22073497	22073697	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	53885.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	2.83	5.53	5.13	5.63	2.05	6.9	4.98	9.84	9.44	12.05	9.55	2.51
Merged-chr2-170132220-2	chr2	170132143	170132343	+	747.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-1023.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.25	5.28	10.27	1.61	3.68	5.33	7.97	8.36	21.05	4.02	8.04	6.27
Merged-chr4-145209436-1	chr4	145209336	145209536	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14431.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	1.21	2.26	3.42	3.62	9.0	7.53	5.98	7.65	8.65	8.03	7.54	5.01
Merged-chr5-103644411-1	chr5	103644311	103644511	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	11313.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	6.06	5.03	6.85	8.45	8.18	6.9	6.98	10.46	1.77	2.51	7.54	1.57
Merged-chr9-41051698-2	chr9	41051590	41051790	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27816.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	7.27	4.02	7.99	4.42	5.32	4.39	4.98	9.48	10.23	15.57	11.56	12.53
Merged-chr8-91343056-2	chr8	91342942	91343142	+	747.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	29517.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	8.48	6.79	7.99	11.66	2.45	4.7	4.65	3.95	15.74	10.54	16.08	9.4
Merged-chr11-51859687-1	chr11	51859587	51859787	+	747.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2057.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.04	4.02	7.99	2.41	3.27	8.15	5.31	8.02	6.88	2.51	3.52	2.51
Merged-chr10-117874171-3	chr10	117874082	117874282	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-28208.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	2.42	7.55	11.41	4.83	12.68	5.64	10.3	9.73	5.7	6.03	16.58	10.34
Merged-chr18-70504309-3	chr18	70504207	70504407	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12479.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	10.5	12.83	6.85	10.86	14.32	14.42	14.95	13.29	11.6	16.07	12.06	15.66
Merged-chr7-12979731-3	chr7	12979601	12979801	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175558, intron 3 of 5)	(TGGGGG)n|Simple_repeat|Simple_repeat	1853.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	2.83	6.04	6.28	6.84	5.73	5.33	2.33	5.89	28.13	22.09	39.19	17.54
Merged-chr4-149144588-3	chr4	149144479	149144679	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6979.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	8.48	8.55	15.4	7.24	9.0	15.37	4.32	10.26	14.95	10.04	21.61	6.89
Merged-chr18-43523495-3	chr18	43523390	43523590	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85204.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	7.27	8.3	10.27	8.85	9.41	9.41	2.99	10.54	12.39	13.05	12.06	4.39
Merged-chr9-123999944-1	chr9	123999844	124000044	+	747.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21536.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	4.44	2.77	9.13	5.63	6.55	5.64	12.62	14.72	5.7	5.52	5.53	3.13
Merged-chr10-93069500-1	chr10	93069400	93069600	+	747.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 2 of 67)	intron (NM_001347060, intron 2 of 67)	12096.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.42	1.26	2.28	4.83	0.82	1.25	2.66	2.05	14.36	11.55	17.59	8.46
Merged-chr11-115163988-3	chr11	115163877	115164077	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	CpG	636.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	9.29	10.31	7.99	3.62	11.05	7.21	8.3	4.4	15.34	10.54	15.07	13.78
Merged-chr18-74876713-2	chr18	74876613	74876813	+	747.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84550.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.23	6.79	2.85	3.62	6.14	7.53	8.64	11.97	12.78	7.53	8.04	6.58
Merged-chr18-68154304-2	chr18	68154201	68154401	+	747.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-73645.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.48	4.28	5.13	11.26	15.96	11.29	3.99	11.3	7.67	10.54	14.57	3.76
Merged-chr7-16403574-3	chr7	16403447	16403647	+	747.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	2351.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	7.27	6.54	11.41	8.85	11.45	11.6	6.31	9.87	11.21	13.05	11.56	10.96
Merged-chr7-133046759-3	chr7	133046648	133046848	+	747.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-31501.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.04	6.54	1.71	11.66	19.64	5.96	1.33	10.51	14.36	10.04	13.57	10.02
Merged-chr3-88740066-3	chr3	88739964	88740164	+	747.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	23210.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	11.71	9.06	8.56	10.46	4.09	5.96	4.65	5.07	22.62	15.06	4.02	6.58
Merged-chr18-61895079-2	chr18	61894977	61895177	+	747.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	16747.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	9.29	8.55	17.68	15.28	9.82	8.15	7.64	9.25	3.34	9.04	9.04	3.45
Merged-chr1-118559709-3	chr1	118559628	118559828	+	747.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-68217.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	2.42	5.79	11.41	6.03	10.23	10.98	16.61	15.59	7.28	4.52	17.08	7.21
Merged-chr11-59637185-3	chr11	59637101	59637301	+	747.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24235.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	10.5	7.8	7.99	9.25	10.64	5.96	4.32	10.23	11.21	13.56	14.07	11.9
Merged-chr4-139043786-3	chr4	139043688	139043888	+	747.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029857, intron 14 of 16)	L1MEd|LINE|L1	31001.0	NM_021358	15565.0	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	8.88	6.54	14.26	6.03	19.64	14.74	15.94	12.22	8.06	12.55	16.58	6.58
Merged-chr8-68881257-1	chr8	68881157	68881357	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008509, intron 1 of 9)	CpG	702.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.85	6.04	9.7	8.04	8.18	3.14	4.98	6.5	3.93	7.53	9.04	6.58
Merged-chr2-128355603-2	chr2	128355506	128355706	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	73745.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	13.73	6.29	5.7	0.0	3.27	27.59	11.29	2.75	12.59	15.06	2.51	2.19
Merged-chr6-120572617-2	chr6	120572516	120572716	+	747.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045733, intron 3 of 3)	intron (NR_045733, intron 3 of 3)	17820.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	10.9	11.32	3.42	0.8	5.32	12.23	1.0	2.36	9.83	8.03	8.04	3.13
Merged-chr15-102283054-2	chr15	102282943	102283143	+	747.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3587.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	7.67	4.28	8.56	2.41	10.23	9.72	2.33	8.66	10.82	8.54	5.02	2.82
Merged-chr2-122032190-1	chr2	122032090	122032290	+	747.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256055, intron 2 of 7)	intron (NM_001256055, intron 2 of 7)	3607.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	15.54	7.53	9.55	13.78
Merged-chr9-40750393-1	chr9	40750293	40750493	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-50880.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	9.69	6.04	4.56	6.03	5.73	1.88	7.64	6.08	3.74	9.04	11.56	5.33
Merged-chr10-44511219-1	chr10	44511119	44511319	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52471.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	2.42	2.77	5.13	3.62	7.77	10.03	1.66	7.88	5.51	8.54	5.53	6.89
Merged-chr16-91081683-2	chr16	91081586	91081786	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12541.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	18.57	4.28	7.42	6.84	4.5	7.84	1.33	7.26	13.18	3.51	11.05	7.21
Merged-chr9-110871154-1	chr9	110871054	110871254	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	8929.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	4.04	6.29	5.7	9.65	3.68	10.35	5.31	5.78	6.49	2.51	6.03	2.82
Merged-chr12-110485359-2	chr12	110485266	110485466	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-373.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	5.25	4.02	3.42	6.03	11.45	7.84	5.98	6.5	12.98	9.54	9.55	10.02
Merged-chr3-95818140-1	chr3	95818040	95818240	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	813.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	3.23	5.03	3.42	6.03	3.27	5.96	5.31	5.8	4.72	5.52	5.02	6.58
Merged-chr5-66299136-3	chr5	66299033	66299233	+	747.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001201413, exon 17 of 17)	3' UTR (NM_001201413, exon 17 of 17)	38292.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	12.92	7.55	10.27	7.64	9.41	5.64	2.99	7.93	12.98	12.05	20.1	20.05
Merged-chr2-102765075-3	chr2	102764977	102765177	+	747.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 8 of 10)	intron (NM_001077514, intron 8 of 10)	-18317.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	11.71	10.56	6.85	9.65	9.82	18.5	5.31	5.94	35.4	39.67	27.13	9.71
Merged-chr1-97688952-3	chr1	97688837	97689037	+	747.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26919.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	9.69	9.56	12.55	10.46	9.41	13.8	6.98	21.2	20.85	14.06	35.68	15.98
Merged-chr6-15728506-2	chr6	15728400	15728600	+	747.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7839.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.27	4.78	6.85	14.88	10.23	7.53	7.31	17.38	15.93	10.54	10.05	9.4
Merged-chr15-95800299-3	chr15	95800196	95800396	+	747.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	Lx8|LINE|L1	9453.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.25	8.05	12.55	11.26	13.91	6.9	6.64	12.81	14.36	12.55	11.05	10.65
Merged-chr9-20978933-3	chr9	20978830	20979030	+	747.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2137.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	4.44	6.29	6.85	9.65	17.18	11.6	3.65	11.86	12.19	4.02	14.57	7.21
Merged-chr18-10869606-3	chr18	10869497	10869697	+	747.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-84045.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	4.04	9.31	14.83	6.44	10.64	9.09	11.63	15.22	10.82	6.53	13.57	7.21
Merged-chr4-140159793-3	chr4	140159695	140159895	+	747.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	16922.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	8.88	2.01	12.55	5.63	14.32	14.42	21.26	13.21	11.01	13.56	13.57	14.1
Merged-chr1-89577175-3	chr1	89577055	89577255	+	747.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	106737.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	6.06	11.57	9.13	11.26	10.23	13.48	10.3	12.08	9.83	7.53	14.07	9.08
Merged-chr11-80137033-2	chr11	80136937	80137137	+	747.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183275, exon 4 of 4)	exon (NM_183275, exon 4 of 4)	5116.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	7.67	9.81	5.7	4.42	10.64	12.86	13.29	13.68	6.49	4.52	6.03	10.96
Merged-chr7-98787100-1	chr7	98787000	98787200	+	747.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-48012.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.46	4.02	2.28	8.04	8.18	2.51	10.63	8.24	2.95	3.01	13.57	1.25
Merged-chr4-28424566-3	chr4	28424470	28424670	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-388561.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	1.62	8.3	3.99	9.65	27.82	21.95	12.95	32.27	9.05	9.54	5.53	9.08
Merged-chr2-167716146-3	chr2	167716023	167716223	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24946.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.46	8.55	8.56	2.41	7.77	7.21	8.97	5.05	3.74	3.51	6.53	3.45
Merged-chr5-113015027-3	chr5	113014975	113015175	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	463.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	10.09	9.81	5.7	4.83	4.5	15.68	5.31	3.98	6.88	5.52	10.05	4.7
Merged-chr17-26647333-3	chr17	26647244	26647444	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-29052.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	6.46	5.53	5.13	13.67	7.36	12.23	16.94	30.17	6.49	5.52	3.52	11.59
Merged-chr3-37693591-1	chr3	37693491	37693691	+	747.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30769.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.81	1.76	3.42	5.23	8.18	5.02	4.98	8.36	2.75	2.01	8.54	4.39
Merged-chr15-84829579-1	chr15	84829479	84829679	+	747.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	25520.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	6.46	1.76	3.42	6.03	7.36	8.47	4.65	8.8	7.47	10.04	10.05	5.01
Merged-chrY-90739005-1	chrY	90738905	90739105	+	747.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16045.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.81	0.75	0.0	1.61	0.0	2.82	0.0	1.68	12.78	9.04	8.04	9.4
Merged-chr9-96536434-3	chr9	96536341	96536541	+	747.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-57766.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.83	6.79	6.85	14.08	23.73	10.98	10.96	1.74	7.08	12.05	11.05	5.95
Merged-chr9-110652505-3	chr9	110652423	110652623	+	747.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1638.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	9.69	8.3	9.7	15.28	10.23	6.9	9.63	6.06	8.46	11.05	10.05	10.34
Merged-chr5-21129771-3	chr5	21129682	21129882	+	747.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46497.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.25	6.04	10.84	10.05	9.41	9.09	4.65	10.96	13.57	11.55	17.08	7.21
Merged-chr3-116191585-3	chr3	116191466	116191666	+	747.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61878.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.06	9.56	13.69	8.45	6.14	14.42	4.32	9.79	14.36	11.05	21.1	6.89
Merged-chr19-34445825-2	chr19	34445734	34445934	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29301.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.85	4.78	7.99	7.24	13.91	6.59	6.64	10.07	8.06	8.03	13.06	7.52
Merged-chr13-113591006-2	chr13	113590866	113591066	+	747.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27598.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.25	3.02	10.27	1.61	6.55	10.35	9.3	9.62	14.95	6.03	16.08	7.52
Merged-chr2-75792095-1	chr2	75791995	75792195	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-40082.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.25	4.78	5.7	2.41	12.27	6.9	10.3	7.12	5.11	7.53	5.02	5.64
Merged-chr7-114144162-1	chr7	114144062	114144262	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-26381.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	1.62	0.0	1.14	0.8	6.95	11.29	10.63	7.46	1.18	1.0	0.0	0.94
Merged-chr8-126483192-1	chr8	126483092	126483292	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8127.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.44	3.52	7.42	11.26	10.23	5.96	5.31	6.84	9.64	3.51	14.57	6.27
Merged-chr1-5020495-2	chr1	5020381	5020581	+	747.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021374)	promoter-TSS (NM_021374)	-942.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	4.85	1.76	6.28	4.83	4.09	4.08	1.33	4.18	6.69	6.03	5.53	1.88
Merged-chr5-124049009-2	chr5	124048921	124049121	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16761.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	9.69	6.04	8.56	5.23	11.86	11.6	15.28	19.63	7.67	3.01	7.03	9.08
Merged-chr11-83556504-3	chr11	83556411	83556611	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22125.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	9.69	8.05	5.7	6.44	15.96	12.86	11.96	5.24	10.42	13.56	10.55	9.08
Merged-chr17-87550842-3	chr17	87550729	87550929	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85150.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	8.88	5.53	26.24	17.29	11.86	7.84	19.27	27.7	5.9	9.04	12.06	9.08
Merged-chr2-126713159-3	chr2	126713062	126713262	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5834.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	6.46	6.54	14.26	17.29	12.27	10.66	7.64	9.11	10.03	6.03	15.07	5.33
Merged-chr9-90013477-3	chr9	90013378	90013578	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-40789.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.25	8.8	12.55	11.26	6.55	8.47	9.3	15.7	9.44	12.55	15.07	6.89
Merged-chr18-67542708-3	chr18	67542607	67542807	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194355, intron 2 of 14)	intron (NM_194355, intron 2 of 14)	6466.0	NM_176832	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	17.77	8.05	13.69	10.05	9.41	7.53	4.65	15.08	9.83	4.52	9.55	4.07
Merged-chr17-35214807-3	chr17	35214736	35214936	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9485.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	15.34	18.86	7.42	4.42	13.09	12.54	7.31	3.79	16.72	12.55	9.55	8.46
Merged-chr2-170347507-3	chr2	170347386	170347586	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164369, exon 12 of 12)	3' UTR (NM_001164369, exon 12 of 12)	-8875.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.27	9.06	8.56	8.04	6.95	4.08	6.98	6.2	8.06	11.05	3.52	4.39
Merged-chr11-72221545-3	chr11	72221451	72221651	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5959.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	4.85	9.81	10.84	8.45	10.64	10.03	10.3	8.38	9.44	6.53	15.58	5.95
Merged-chr7-141381605-3	chr7	141381394	141381594	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10666.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	2.83	3.52	3.42	2.01	3.68	4.08	1.99	3.36	7.47	4.02	6.53	3.45
Merged-chr7-89415926-2	chr7	89415840	89416040	+	747.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10366.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	10.5	3.77	11.98	15.28	7.36	9.41	8.64	15.28	2.16	4.02	6.03	0.94
Merged-chr8-82398294-2	chr8	82398191	82398391	+	747.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	4295.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	10.5	9.81	7.42	5.63	11.86	5.96	8.97	6.39	6.29	3.51	8.04	5.95
Merged-chr14-57718454-2	chr14	57718347	57718547	+	747.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 2 of 7)	ORR1B1|LTR|ERVL-MaLR	15971.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	6.86	3.02	4.56	5.63	5.32	9.09	8.97	8.24	9.64	9.54	10.05	5.64
Merged-chr13-46062944-3	chr13	46062846	46063046	+	747.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97955.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	11.31	5.03	10.27	10.46	11.86	5.64	7.64	8.69	8.85	7.03	13.06	9.4
Merged-chr10-8362310-3	chr10	8362205	8362405	+	747.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	156520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	14.13	9.06	8.56	3.62	9.0	32.3	15.94	4.09	29.11	28.12	28.64	10.96
Merged-chr9-56101232-3	chr9	56101119	56101319	+	747.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	11243.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	5.65	8.05	9.13	10.86	10.64	11.92	11.63	11.66	12.98	18.08	15.58	8.46
Merged-chr7-55910578-2	chr7	55910484	55910684	+	747.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	51909.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.46	5.28	7.99	12.47	2.86	7.21	6.98	5.92	11.6	14.06	19.6	5.64
Merged-chrX-8091097-3	chrX	8090992	8091192	+	747.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009515)	promoter-TSS (NM_009515)	-601.0	NM_009515	22376.0	Mm.4735	NM_009515	ENSMUSG00000031165	Was	U42471|Wasp	Wiskott-Aldrich syndrome	protein-coding	10.5	5.03	11.98	12.07	11.45	7.84	12.62	2.89	10.62	16.57	15.58	11.59
Merged-chr4-127041429-3	chr4	127041314	127041514	+	747.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	19740.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	6.86	11.32	15.4	8.85	10.23	6.9	3.99	4.01	13.18	9.04	17.08	5.33
Merged-chr4-143288606-2	chr4	143288494	143288694	+	747.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010329, intron 1 of 5)	intron (NM_010329, intron 1 of 5)	10970.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	3.63	5.53	13.69	4.42	9.0	13.17	10.96	9.11	1.18	4.02	3.52	2.19
Merged-chr7-75794466-2	chr7	75794340	75794540	+	747.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-53898.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.67	3.52	2.28	2.01	8.59	6.27	10.96	8.78	14.36	7.53	11.56	6.58
Merged-chr17-5187687-3	chr17	5187574	5187774	+	747.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	192600.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	5.25	7.8	7.99	3.62	11.45	13.48	6.31	10.09	8.85	4.02	12.06	6.58
Merged-chr18-67569297-3	chr18	67569188	67569388	+	747.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16567.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	7.67	5.53	13.69	11.26	4.09	1.88	10.3	8.1	9.83	1.0	12.56	3.45
Merged-chr12-103494677-1	chr12	103494577	103494777	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-37454.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	3.23	6.29	3.42	4.02	4.09	6.27	0.33	6.62	5.9	6.03	7.03	3.13
Merged-chr4-55327752-1	chr4	55327652	55327852	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22290.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.81	8.3	1.14	8.04	5.73	3.45	9.63	8.92	4.13	1.0	1.51	5.95
Merged-chr9-40812061-1	chr9	40811961	40812161	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	10788.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.85	7.8	1.14	1.21	9.82	8.78	0.66	2.27	8.06	4.52	1.51	5.33
Merged-chr1-80615612-2	chr1	80615493	80615693	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	49759.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	1.62	1.01	1.14	2.82	5.73	4.39	3.65	7.04	13.96	16.57	13.57	4.07
Merged-chr8-119807956-2	chr8	119807839	119808039	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29523.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	6.86	2.77	1.14	5.23	7.36	6.27	6.64	8.97	6.29	6.53	11.05	9.4
Merged-chr9-104576323-1	chr9	104576223	104576423	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	6840.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	1.62	0.75	5.7	7.24	6.55	2.82	7.64	7.37	2.16	2.01	6.03	0.94
Merged-chr16-30733920-1	chr16	30733820	30734020	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134197.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.81	1.76	1.14	0.0	4.5	5.64	0.66	0.39	12.78	11.05	6.53	3.45
Merged-chr8-70903263-2	chr8	70903180	70903380	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2694.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	7.27	3.77	0.0	8.85	6.14	4.7	3.99	5.58	18.1	12.05	11.05	9.08
Merged-chr6-90714918-1	chr6	90714818	90715018	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	1611.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	1.21	1.51	7.42	3.22	0.82	0.63	3.99	3.59	2.16	3.51	0.0	1.57
Merged-chr1-136394698-1	chr1	136394598	136394798	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20573.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	4.04	5.28	8.56	20.11	0.82	5.96	5.31	9.42	5.31	1.0	8.04	9.08
Merged-chr8-11050020-1	chr8	11049920	11050120	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-41590.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.04	1.01	1.71	5.23	4.09	7.53	3.99	8.19	1.97	0.5	4.02	0.31
Merged-chr9-70879015-1	chr9	70878915	70879115	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	55793.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.23	1.01	3.42	2.41	3.27	1.25	5.98	10.82	5.51	2.51	1.51	3.45
Merged-chr12-80792127-6	chr12	80791964	80792164	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	RSINE1|SINE|B4	1532.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	9.29	8.55	12.55	12.47	12.27	10.66	5.98	7.71	9.83	17.57	11.56	7.52
Merged-chr16-84985586-1	chr16	84985486	84985686	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 12 of 15)	ORR1E|LTR|ERVL-MaLR	13375.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.86	5.79	1.71	7.64	3.68	4.08	6.64	6.95	0.59	2.01	6.53	2.19
Merged-chr6-115602495-1	chr6	115602395	115602595	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023290, intron 1 of 7)	intron (NM_023290, intron 1 of 7)	557.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	4.04	4.28	10.27	4.83	8.59	7.21	3.99	4.54	5.7	12.55	6.03	5.95
Merged-chr15-6425522-1	chr15	6425422	6425622	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19811.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.42	0.25	0.0	6.44	7.77	3.45	3.99	6.22	4.72	3.01	5.02	3.45
Merged-chr6-89257570-1	chr6	89257470	89257670	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie8|DNA|hAT-Charlie	28155.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	1.62	3.27	2.28	2.41	6.14	6.59	4.98	6.87	6.29	5.02	6.03	7.83
Merged-chr19-34195899-1	chr19	34195799	34195999	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	2965.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.23	1.76	5.7	4.02	4.09	1.25	4.98	10.29	2.56	6.03	7.54	5.01
Merged-chr2-142699108-1	chr2	142699008	142699208	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202356.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.06	5.79	4.56	6.84	4.91	5.02	5.31	6.76	8.46	5.52	11.56	3.13
Merged-chr12-84163148-1	chr12	84163048	84163248	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 3 of 12)	intron (NM_001163501, intron 3 of 12)	-14659.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.0	2.52	0.57	0.0	0.82	0.63	0.0	0.0	3.54	0.5	5.02	3.13
Merged-chr14-64725402-1	chr14	64725302	64725502	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 8 of 39)	LTR67B|LTR|ERVL	72871.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	6.06	3.77	6.85	9.25	11.86	1.88	8.3	9.5	2.16	0.0	5.02	6.27
Merged-chr12-111302170-2	chr12	111302084	111302284	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183016, exon 28 of 37)	exon (NM_183016, exon 28 of 37)	31088.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	8.88	10.06	14.83	9.65	3.68	7.21	1.66	7.79	3.15	6.53	12.56	4.39
Merged-chr5-76525888-2	chr5	76525817	76526017	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3390.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	12.11	7.55	6.28	7.24	8.18	8.47	8.97	7.43	6.88	8.54	4.02	4.7
Merged-chr6-108405400-1	chr6	108405300	108405500	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010585, exon 34 of 62)	exon (NM_010585, exon 34 of 62)	-84343.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.21	2.26	5.7	7.24	2.05	7.21	2.66	6.76	3.54	0.0	1.51	4.7
Merged-chr7-100931658-1	chr7	100931558	100931758	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081116, exon 1 of 21)	exon (NM_001081116, exon 1 of 21)	503.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	8.88	4.53	6.28	5.23	5.32	0.31	5.31	6.39	3.74	2.51	5.53	0.63
Merged-chr4-123565800-1	chr4	123565700	123565900	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-50620.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	2.83	4.28	9.13	0.8	9.41	2.2	3.65	8.02	3.15	4.52	1.0	1.88
Merged-chr13-85287947-1	chr13	85287847	85288047	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 1 of 24)	intron (NM_145452, intron 1 of 24)	1539.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	11.31	4.28	2.28	2.41	2.45	3.76	6.31	6.2	4.72	5.52	6.53	4.7
Merged-chr8-94397516-3	chr8	94397426	94397626	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-B4-int|LTR|ERVL	11097.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	8.48	8.8	4.56	5.23	6.55	17.87	2.33	4.74	15.74	11.55	15.58	12.53
Merged-chr7-101617081-2	chr7	101617038	101617238	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-35977.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	2.02	3.77	9.13	2.41	7.36	10.35	4.65	3.17	9.64	6.53	8.54	7.21
Merged-chr5-147913922-1	chr5	147913822	147914022	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19107.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.02	4.28	5.7	6.44	8.18	2.2	8.3	5.05	10.82	7.03	5.02	6.27
Merged-chr6-134771365-1	chr6	134771265	134771465	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 1 of 6)	L1Md_F2|LINE|L1	-20995.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	1.62	0.0	0.0	0.0	0.82	0.63	3.32	0.03	10.42	1.0	8.54	3.13
Merged-chr3-19694162-3	chr3	19694069	19694269	+	746.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_205769, exon 2 of 2)	exon (NM_205769, exon 2 of 2)	1227.0	NM_205769	12918.0	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	12.11	7.04	11.41	3.62	8.59	10.66	11.96	7.32	8.85	9.54	10.55	7.52
Merged-chr18-36525679-3	chr18	36525588	36525788	+	746.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2464.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	6.86	7.55	11.98	16.89	6.95	12.54	6.64	9.17	17.9	12.55	22.61	15.66
Merged-chr9-66888137-2	chr9	66888043	66888243	+	746.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	31562.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.06	4.02	11.98	13.27	8.18	5.02	8.3	8.19	5.51	8.54	6.53	6.89
Merged-chr10-69351312-2	chr10	69351221	69351421	+	746.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007659, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1591.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	1.62	1.01	9.13	6.84	12.27	4.7	9.97	12.48	9.44	9.54	11.56	8.77
Merged-chr16-78317040-2	chr16	78316942	78317142	+	746.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025192, intron 1 of 6)	B3A|SINE|B2	15371.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	10.9	0.5	2.85	5.63	7.77	11.92	6.98	9.25	9.83	15.57	22.61	11.9
Merged-chr12-8494917-3	chr12	8494878	8495078	+	746.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5031.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.23	2.26	10.27	4.83	5.32	7.84	5.31	11.1	4.33	4.52	3.01	6.27
Merged-chr17-28429011-3	chr17	28428911	28429111	+	746.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 4 of 10)	intron (NM_010220, intron 4 of 10)	57138.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	7.67	4.02	12.55	14.88	3.68	10.98	6.64	15.17	10.23	6.03	11.05	4.07
Merged-chr10-98775514-3	chr10	98775415	98775615	+	746.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139127.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	12.52	6.29	13.12	10.46	12.27	12.54	5.65	7.79	9.64	7.53	7.54	6.58
Merged-chr18-26740459-2	chr18	26740354	26740554	+	746.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-986297.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.23	2.52	1.14	4.02	7.77	9.09	9.3	12.59	11.01	6.53	13.57	8.77
Merged-chr4-59043212-2	chr4	59043095	59043295	+	746.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8039.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	8.88	7.55	15.97	14.88	7.77	5.96	4.65	6.25	4.92	2.01	3.52	0.63
Merged-chr1-82927333-2	chr1	82927239	82927439	+	746.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	87879.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	2.42	2.26	6.85	4.42	3.27	11.29	9.63	7.12	9.05	10.04	13.57	9.4
Merged-chr8-13887994-2	chr8	13887901	13888101	+	746.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	2270.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	6.86	5.28	6.85	6.44	7.77	15.05	6.31	5.52	12.98	13.05	21.1	6.58
Merged-chr18-75469254-2	chr18	75469157	75469357	+	746.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	ORR1F|LTR|ERVL-MaLR	-45388.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	10.09	9.81	14.83	8.85	12.27	8.78	11.96	18.62	5.11	6.53	14.57	8.46
Merged-chr15-17604499-2	chr15	17604362	17604562	+	746.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	765165.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	1.62	2.77	2.28	5.23	3.68	1.88	10.63	4.21	5.7	6.53	2.51	7.83
Merged-chr2-38658578-2	chr2	38658454	38658654	+	746.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14648.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	4.04	5.03	13.69	10.05	1.64	3.45	10.63	8.07	2.75	4.02	4.52	5.64
Merged-chr13-107855728-3	chr13	107855627	107855827	+	746.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	MTC|LTR|ERVL-MaLR	34337.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	10.5	5.03	10.84	9.65	10.64	11.92	4.98	7.43	21.83	12.55	16.58	7.52
Merged-chr13-58205188-3	chr13	58205078	58205278	+	746.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	10475.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	13.33	15.34	17.11	10.05	11.45	8.47	10.3	18.59	9.83	11.55	13.06	6.27
Merged-chr8-92772562-1	chr8	92772462	92772662	+	746.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-54735.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	1.62	1.76	0.57	2.41	6.95	9.09	5.98	7.07	2.95	3.01	1.51	4.07
Merged-chr2-118896371-2	chr2	118896249	118896449	+	746.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5266.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.83	2.52	4.56	4.02	2.86	0.94	2.66	7.43	2.95	5.52	10.05	7.83
Merged-chr10-96606137-1	chr10	96606037	96606237	+	746.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10864.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.65	3.02	5.7	4.42	8.18	8.78	7.97	6.98	5.11	8.54	4.52	2.19
Merged-chr17-86903783-2	chr17	86903688	86903888	+	746.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13560.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	3.23	6.54	10.84	7.24	10.64	6.27	3.65	13.26	3.15	5.52	7.54	8.14
Merged-chr18-5592715-3	chr18	5592592	5592792	+	746.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	45.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.83	8.05	6.28	7.24	5.32	10.03	8.97	9.06	8.06	4.02	12.06	4.07
Merged-chrX-7776898-1	chrX	7776798	7776998	+	746.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	12857.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	7.27	3.77	5.7	1.61	14.73	13.17	4.65	6.28	4.33	4.52	5.02	2.51
Merged-chr11-88099143-3	chr11	88099036	88099236	+	746.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198013)	promoter-TSS (NM_198013)	-10.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	11.71	16.35	12.55	11.66	10.64	9.41	14.62	8.89	6.49	9.54	13.57	9.08
Merged-chr2-19276376-3	chr2	19276220	19276420	+	746.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-67997.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	4.44	3.27	5.13	2.82	2.86	5.64	4.32	9.17	6.49	10.04	7.03	3.76
Merged-chr8-25256117-3	chr8	25256008	25256208	+	746.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50162.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	5.25	11.57	5.13	12.47	16.77	11.92	2.66	7.68	9.64	9.04	14.07	11.59
Merged-chr2-79050862-2	chr2	79050751	79050951	+	746.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181173.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	8.08	3.52	11.41	12.87	11.45	12.23	5.65	13.09	8.46	5.52	9.04	5.33
Merged-chr6-72051956-1	chr6	72051856	72052056	+	746.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9428.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.23	5.28	6.85	3.62	7.77	8.78	3.32	7.32	6.29	7.03	10.05	10.34
Merged-chr4-35061114-2	chr4	35061001	35061201	+	746.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	MT2B1|LTR|ERVL	-90954.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	12.92	25.66	16.54	6.84	7.36	8.47	4.65	2.92	7.08	15.06	13.06	4.07
Merged-chr2-153342786-2	chr2	153342695	153342895	+	746.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3015.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	9.69	4.02	3.42	3.22	4.91	10.35	3.65	5.86	13.96	13.05	3.01	8.77
Merged-chr18-34502676-2	chr18	34502564	34502764	+	746.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	4159.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	6.06	6.29	5.13	9.25	8.59	12.86	11.96	14.69	14.36	4.02	7.54	6.58
Merged-chr12-102719795-3	chr12	102719691	102719891	+	746.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14922.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	10.09	7.55	13.12	11.26	5.73	10.35	3.99	8.07	13.77	18.58	13.06	4.7
Merged-chr7-80370225-3	chr7	80370123	80370323	+	746.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172903, intron 2 of 23)	intron (NM_172903, intron 2 of 23)	1152.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	8.88	6.54	1.14	17.29	9.0	5.64	7.64	11.44	22.42	8.54	17.08	9.71
Merged-chr11-79674457-2	chr11	79674367	79674567	+	746.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045898, exon 2 of 3)	non-coding (NR_045898, exon 2 of 3)	619.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.23	4.78	5.13	4.83	5.32	7.21	3.32	4.32	11.01	21.59	17.59	10.02
Merged-chr11-21096662-2	chr11	21096590	21096790	+	746.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023324, intron 1 of 6)	Lx8|LINE|L1	-2179.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	5.25	12.83	6.85	1.21	7.36	10.98	10.63	4.57	11.6	8.54	9.55	0.31
Merged-chr8-125240770-3	chr8	125240711	125240911	+	746.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 11 of 12)	B3A|SINE|B2	186616.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	8.08	6.54	9.13	6.84	10.23	10.66	11.63	6.95	8.46	11.55	12.06	9.08
Merged-chr13-112186597-1	chr13	112186497	112186697	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-101854.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.21	0.0	1.14	3.62	13.91	3.14	8.64	5.72	5.31	6.03	6.03	5.64
Merged-chr3-121842417-1	chr3	121842317	121842517	+	746.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27115.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	6.46	4.53	7.42	6.03	5.32	1.25	1.99	4.18	12.0	6.03	12.06	7.21
Merged-chr6-125243819-2	chr6	125243730	125243930	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6803.0	NM_001286753	21940.0	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	6.06	4.28	10.84	11.26	4.09	7.84	6.31	14.3	6.49	6.03	13.06	6.89
Merged-chr18-13787638-2	chr18	13787543	13787743	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185090.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	4.04	7.8	6.85	10.05	10.23	6.9	4.32	7.54	3.74	8.03	5.02	3.45
Merged-chr4-136469086-2	chr4	136468996	136469196	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	-665.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	11.31	7.55	9.13	11.66	11.45	4.08	6.64	15.56	7.47	4.52	4.52	9.08
Merged-chr4-133338770-1	chr4	133338670	133338870	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199306, intron 1 of 15)	intron (NM_199306, intron 1 of 15)	545.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	2.42	6.79	6.85	6.84	8.59	5.64	4.98	5.13	4.72	4.52	8.04	4.39
Merged-chr11-61104494-2	chr11	61104404	61104604	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	-36331.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	5.25	3.52	2.28	1.61	2.86	12.54	2.33	6.14	13.77	6.03	15.58	6.27
Merged-chr9-25261189-2	chr9	25261087	25261287	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	8295.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	5.65	2.52	5.13	9.65	11.05	6.59	2.66	10.49	9.44	14.06	10.55	4.39
Merged-chr18-66467397-2	chr18	66467314	66467514	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	8810.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	8.88	5.03	3.42	4.83	6.14	8.47	6.31	8.05	10.03	6.53	4.52	14.72
Merged-chr3-38885663-1	chr3	38885563	38885763	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1277.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	5.25	5.79	0.57	4.02	6.14	2.82	6.64	8.13	5.11	8.54	14.07	4.39
Merged-chr4-59253136-3	chr4	59253012	59253212	+	746.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6939.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	10.09	6.04	6.85	5.63	7.77	13.8	9.63	5.69	8.65	13.05	5.53	11.9
Merged-chr9-64222284-3	chr9	64222176	64222376	+	746.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	-12925.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	8.08	10.82	8.56	16.49	13.09	15.99	8.97	15.2	9.24	18.08	12.56	7.83
Merged-chr19-42520009-3	chr19	42519922	42520122	+	746.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	1217.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	8.48	11.82	11.98	12.87	12.27	5.02	5.65	10.6	11.6	14.06	16.08	12.84
Merged-chr1-165768504-3	chr1	165768466	165768666	+	746.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	4808.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	10.9	6.04	4.56	5.63	8.59	16.62	18.27	9.28	11.01	14.06	8.04	7.83
Merged-chr1-55404664-2	chr1	55404562	55404762	+	746.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1284.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	8.48	7.8	10.84	8.04	4.91	8.47	6.64	11.44	9.44	6.53	6.03	3.76
Merged-chr11-113787399-3	chr11	113787330	113787530	+	746.388855	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-35615.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	1.01	0.0	0.4	4.09	2.82	4.98	2.52	4.33	4.02	4.52	3.13
Merged-chr1-54898839-3	chr1	54898745	54898945	+	746.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27542.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	17.36	2.01	11.41	10.46	17.59	8.78	7.64	18.28	12.0	11.05	7.03	9.08
Merged-chr13-55754477-2	chr13	55754376	55754576	+	746.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028281, intron 2 of 3)	intron (NM_028281, intron 2 of 3)	27108.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	10.5	5.53	10.84	13.27	11.86	11.6	5.98	12.67	3.34	7.03	2.01	7.52
Merged-chr12-26425236-2	chr12	26425137	26425337	+	746.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9975.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	6.06	6.29	1.14	9.25	12.68	12.86	14.62	8.66	1.57	2.01	2.01	1.88
Merged-chr11-84522816-2	chr11	84522705	84522905	+	746.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008498, intron 1 of 4)	CpG	2729.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	8.08	4.28	11.98	8.85	17.59	10.35	7.97	12.17	3.15	9.04	6.03	7.83
Merged-chr2-166750816-2	chr2	166750709	166750909	+	746.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36977.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.63	9.81	7.42	7.24	12.68	6.27	5.98	9.14	6.29	14.56	5.53	13.78
Merged-chr16-11288387-2	chr16	11288261	11288461	+	746.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25448.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	8.08	16.1	9.7	4.02	6.55	9.41	6.98	0.14	26.75	17.57	14.57	8.46
Merged-chr18-88981065-3	chr18	88980973	88981173	+	746.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175542, intron 7 of 48)	intron (NM_175542, intron 7 of 48)	9043.0	NR_105777	102466633.0		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	6.06	7.29	5.7	13.67	12.68	10.66	6.98	18.53	9.44	17.57	19.6	7.21
Merged-chr3-122169803-1	chr3	122169703	122169903	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 44 of 49)	intron (NM_007378, intron 44 of 49)	-75754.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	2.83	6.29	2.28	4.42	6.55	4.7	5.98	6.79	4.72	2.51	10.55	5.64
Merged-chr3-53041425-1	chr3	53041325	53041525	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175386)	promoter-TSS (NM_175386)	-122.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	3.23	5.79	6.28	6.03	10.64	5.96	7.97	7.54	6.69	3.01	3.52	4.39
Merged-chr12-80760675-3	chr12	80760559	80760759	+	746.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008423)	promoter-TSS (NM_001008423)	56.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	12.11	6.29	3.99	7.24	6.95	8.15	7.64	6.62	9.64	12.55	7.54	3.13
Merged-chr6-122545467-1	chr6	122545367	122545567	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8342.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	1.21	4.02	1.71	2.82	9.0	6.9	6.98	6.0	1.38	3.01	4.52	8.14
Merged-chrUn_GL456387-15421-1	chrUn_GL456387	15321	15521	+	746.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	4.52	7.03	4.52	8.14
Merged-chr2-73371276-1	chr2	73371176	73371376	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	15204.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	2.83	1.76	5.7	4.42	3.68	3.14	4.32	4.51	1.97	6.53	6.53	3.45
Merged-chr10-67297681-3	chr10	67297550	67297750	+	746.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12369.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	8.08	7.29	0.0	5.63	10.23	12.54	11.29	9.79	11.41	2.51	13.06	9.4
Merged-chr7-71873103-1	chr7	71873003	71873203	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36592.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.02	5.28	7.99	1.21	7.77	5.33	7.97	8.3	0.2	1.0	5.02	1.57
Merged-chr1-135375216-4	chr1	135375166	135375366	+	746.285706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175259)	promoter-TSS (NM_175259)	-203.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	10.9	3.02	7.42	4.83	11.05	10.35	13.95	8.13	8.65	5.52	7.03	6.89
Merged-chr5-143731710-3	chr5	143731626	143731826	+	746.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029749, intron 1 of 17)	CpG	554.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	7.67	6.54	14.26	2.01	6.55	9.41	7.64	5.21	10.03	11.55	12.06	5.95
Merged-chr4-109665308-3	chr4	109665180	109665380	+	746.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	92.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	8.08	5.79	3.42	7.64	12.27	5.33	9.63	6.56	10.82	10.54	20.6	8.14
Merged-chr3-87804184-1	chr3	87804084	87804284	+	746.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011832, exon 6 of 22)	exon (NM_011832, exon 6 of 22)	7233.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	2.83	1.01	0.57	2.41	3.27	7.21	6.64	7.35	2.36	5.02	3.52	8.14
Merged-chr5-75979326-1	chr5	75979226	75979426	+	746.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-898.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	1.21	1.51	3.99	7.24	8.59	9.41	4.98	7.71	1.18	0.0	0.0	1.57
Merged-chr10-70199980-3	chr10	70199871	70200071	+	746.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-4693.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	11.31	7.8	5.7	6.84	8.59	8.78	5.98	11.69	10.62	11.55	9.55	8.14
Merged-chr11-20103896-3	chr11	20103804	20104004	+	746.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	L1MA5A|LINE|L1	9047.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	8.88	3.52	9.13	2.41	8.59	4.39	6.31	14.36	10.42	7.53	10.05	5.64
Merged-chr6-50601845-1	chr6	50601745	50601945	+	746.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5255.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	6.46	9.31	4.56	6.03	7.77	9.41	11.63	7.35	15.54	8.54	8.54	4.07
Merged-chr19-6262407-3	chr19	6262310	6262510	+	746.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_194348)	TTS (NM_194348)	-2233.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	12.11	7.04	11.41	3.62	7.36	11.29	5.31	5.1	15.34	18.58	11.56	4.39
Merged-chr7-16932168-3	chr7	16932106	16932306	+	746.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8174.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	7.27	6.29	6.28	9.65	10.64	3.45	1.66	6.2	13.77	8.54	11.56	4.39
Merged-chr18-75740800-3	chr18	75740693	75740893	+	746.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43097.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	8.08	5.53	7.42	8.04	9.0	9.72	7.97	10.15	14.95	4.52	8.54	8.46
Merged-chr12-25282726-3	chr12	25282623	25282823	+	746.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153549.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.92	9.56	5.7	10.86	7.36	7.84	9.97	13.96	11.8	6.03	14.07	10.02
Merged-chr1-16225600-3	chr1	16225499	16225699	+	746.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119717.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	8.08	3.27	2.28	9.25	12.68	10.35	3.65	7.85	11.41	9.04	7.54	10.65
Merged-chr18-73839774-3	chr18	73839681	73839881	+	746.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19604.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	10.09	10.06	11.41	7.64	9.0	10.03	4.98	16.21	10.62	12.55	15.07	3.13
Merged-chr3-105674808-3	chr3	105674694	105674894	+	746.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001039347)	TTS (NM_001039347)	12777.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	13.73	8.05	6.85	8.45	6.55	7.21	5.98	10.85	18.1	12.55	14.07	8.77
Merged-chr11-47199253-3	chr11	47199156	47199356	+	746.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	180046.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	11.31	9.81	3.99	4.42	11.86	11.6	5.65	14.83	12.59	11.05	11.05	8.77
Merged-chr4-150586448-1	chr4	150586348	150586548	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	65726.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.23	5.03	7.42	10.86	7.36	5.64	4.65	15.11	13.37	3.51	6.53	5.95
Merged-chr14-101529415-1	chr14	101529315	101529515	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	79776.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.83	2.01	5.13	6.44	2.86	6.59	2.33	7.04	3.15	2.01	3.01	1.57
Merged-chr11-61764940-1	chr11	61764840	61765040	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2852.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	1.21	2.52	7.42	6.84	3.68	9.41	6.64	8.58	6.29	1.51	5.02	3.13
Merged-chr6-7857052-1	chr6	7856952	7857152	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_052993, intron 1 of 3)	RMER20C_Mm|LTR|ERVK	11828.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	6.46	4.02	5.7	5.63	7.36	7.21	4.65	7.74	6.69	5.02	8.54	3.45
Merged-chr11-73131238-3	chr11	73131158	73131358	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 22 of 30)	intron (NM_001361245, intron 22 of 30)	7036.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	9.69	4.02	8.56	6.03	5.32	7.53	6.64	9.08	12.78	9.54	11.56	9.4
Merged-chr11-116694666-2	chr11	116694540	116694740	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009180)	promoter-TSS (NM_009180)	20.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	7.27	6.54	5.7	4.42	6.55	9.72	6.98	7.74	6.1	6.03	11.05	2.82
Merged-chr2-148498720-1	chr2	148498620	148498820	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-55185.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	14.13	3.27	13.12	6.84	2.05	2.51	1.99	3.48	2.75	1.0	3.01	2.19
Merged-chr9-57835133-3	chr9	57835013	57835213	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019689)	promoter-TSS (NM_019689)	-879.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	2.42	7.29	12.55	8.04	4.09	9.41	5.65	5.69	13.77	13.56	12.06	13.47
Merged-chr13-101680324-1	chr13	101680224	101680424	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001077495)	TTS (NM_001077495)	12306.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.04	1.26	3.99	3.22	3.27	4.39	9.3	2.94	8.65	7.03	13.57	9.4
Merged-chr1-153386920-1	chr1	153386820	153387020	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27313.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	2.42	7.55	1.14	6.03	5.73	9.41	2.99	3.42	5.31	19.08	15.07	5.95
Merged-chr6-136693521-2	chr6	136693428	136693628	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31635.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	12.92	6.04	7.42	12.07	7.77	7.53	15.61	13.65	4.52	8.03	5.53	5.33
Merged-chr11-78345110-2	chr11	78344911	78345111	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313988)	promoter-TSS (NM_001313988)	-573.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	6.86	2.77	2.28	1.61	0.82	6.27	4.65	5.64	2.36	5.02	4.52	6.27
Merged-chr10-59235795-1	chr10	59235695	59235895	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13873.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.06	10.31	4.56	2.41	4.5	20.7	3.99	2.5	17.7	12.55	16.08	5.95
Merged-chr16-33776930-1	chr16	33776830	33777030	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17107.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	2.42	2.26	0.0	1.61	0.41	8.78	2.33	6.79	1.77	6.53	3.52	4.07
Merged-chr8-75030717-1	chr8	75030617	75030817	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2969.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	4.44	3.77	7.42	0.8	0.82	4.39	7.97	1.57	2.75	0.5	5.02	3.45
Merged-chr15-41613149-1	chr15	41613049	41613249	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	164046.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.44	4.53	9.13	6.44	5.73	3.45	9.3	4.88	3.74	1.51	5.53	12.53
Merged-chr5-43103219-1	chr5	43103119	43103319	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-130244.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.5	0.57	0.0	7.77	5.02	2.99	10.37	0.2	2.01	4.02	0.63
Merged-chr1-54835966-1	chr1	54835866	54836066	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	90421.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.83	6.54	7.42	6.84	6.55	7.21	4.65	7.93	4.33	6.53	7.54	10.02
Merged-chr7-116606880-2	chr7	116606774	116606974	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102505.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.63	5.03	19.4	4.02	6.95	7.53	4.32	6.62	16.92	12.55	11.05	5.33
Merged-chr5-35563614-1	chr5	35563514	35563714	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030208, intron 9 of 10)	intron (NM_030208, intron 9 of 10)	11456.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.81	9.31	2.28	5.63	2.45	7.53	5.31	6.25	5.51	8.54	7.54	0.63
Merged-chr3-132103624-1	chr3	132103524	132103724	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	18332.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	6.86	2.77	5.13	6.44	5.73	6.27	9.3	16.37	4.33	7.53	12.56	6.27
Merged-chr15-9710533-1	chr15	9710433	9710633	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305042, intron 9 of 36)	ORR1F|LTR|ERVL-MaLR	38335.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	1.62	2.01	8.56	4.42	8.18	3.14	5.31	10.93	2.75	6.03	10.05	2.82
Merged-chr5-5897935-1	chr5	5897835	5898035	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-148618.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	4.91	4.39	5.65	6.53	1.97	4.02	1.51	1.25
Merged-chr16-13232767-1	chr16	13232667	13232867	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-23714.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.25	2.26	4.56	4.02	2.45	5.96	6.64	2.38	8.06	3.51	3.52	3.45
Merged-chr3-117979346-1	chr3	117979246	117979446	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110410.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.44	2.77	9.7	2.82	4.5	7.53	6.98	11.47	4.72	9.54	8.04	1.25
Merged-chr13-49214566-1	chr13	49214466	49214666	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	1460.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	6.06	2.01	3.42	2.82	4.5	3.45	5.65	6.64	4.33	10.54	4.02	5.95
Merged-chr1-157413183-1	chr1	157413083	157413283	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-588.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	8.88	2.26	5.13	0.8	7.77	6.59	2.99	7.21	3.93	1.0	8.04	2.51
Merged-chr3-28007838-1	chr3	28007738	28007938	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	23667.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.83	3.02	0.0	2.82	5.32	5.02	1.66	3.2	13.18	10.04	7.54	4.39
Merged-chr4-118296019-1	chr4	118295919	118296119	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4622.0	NM_011213	19268.0	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	1.62	4.02	7.42	7.24	1.23	10.98	2.33	3.48	1.18	1.51	5.02	2.51
Merged-chr15-58416850-1	chr15	58416750	58416950	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	1382.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	12.11	6.79	9.13	7.24	6.14	5.02	1.99	3.14	4.13	4.52	3.01	6.89
Merged-chr5-31001216-1	chr5	31001116	31001316	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32539.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	1.62	1.51	5.7	0.8	0.82	0.31	0.33	2.55	10.82	9.54	2.51	9.71
Merged-chr5-29735039-3	chr5	29734960	29735160	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-838.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	3.63	7.55	9.13	6.03	7.77	13.8	5.65	11.83	20.65	9.54	10.55	4.7
Merged-chr14-27367704-1	chr14	27367604	27367804	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	6315.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.62	8.05	1.14	0.8	0.0	1.57	1.33	0.5	15.93	13.05	11.05	1.57
Merged-chr1-172335416-2	chr1	172335342	172335542	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5768.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	4.04	4.28	4.56	5.23	11.05	8.78	8.64	6.93	2.95	3.51	3.52	5.33
Merged-chr12-8947388-1	chr12	8947288	8947488	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-541.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	4.44	2.52	1.71	2.01	2.45	0.94	3.65	5.05	6.88	5.02	9.04	2.51
Merged-chr7-118279177-1	chr7	118279077	118279277	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35270.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.65	4.28	3.42	1.61	4.09	2.51	0.66	3.0	9.64	7.53	6.03	11.9
Merged-chr4-150066866-1	chr4	150066766	150066966	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1588.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	1.21	2.52	0.0	2.41	5.73	2.51	1.33	6.2	2.36	0.5	7.03	0.94
Merged-chr10-95265046-1	chr10	95264946	95265146	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	58663.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.46	4.78	3.99	4.02	6.14	1.57	5.31	6.25	4.92	2.51	6.03	6.58
Merged-chr11-83221597-3	chr11	83221490	83221690	+	745.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1986.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	4.85	10.31	6.85	7.24	9.0	6.9	9.3	7.51	15.93	4.02	16.08	9.08
Merged-chr15-76381071-3	chr15	76381015	76381215	+	745.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175457, intron 1 of 43)	intron (NM_175457, intron 1 of 43)	602.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	12.92	8.55	6.85	7.64	14.73	9.09	4.98	7.35	14.16	8.54	9.04	11.28
Merged-chr2-167695796-3	chr2	167695752	167695952	+	745.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	4675.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	10.09	1.76	15.4	3.62	11.86	11.29	4.65	5.55	3.74	7.03	3.01	3.76
Merged-chr2-44980488-5	chr2	44980408	44980608	+	745.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42669.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	9.29	11.82	15.4	2.41	13.09	5.02	7.97	2.78	5.7	10.04	7.54	8.14
Merged-chr11-89069464-2	chr11	89069345	89069545	+	745.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4396.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	6.86	15.85	8.56	6.44	11.45	10.66	4.32	10.01	2.95	1.51	2.01	1.25
Merged-chr15-35681878-2	chr15	35681760	35681960	+	745.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-20813.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	5.25	5.28	5.7	12.87	13.5	9.41	7.31	15.45	8.65	6.03	22.11	8.14
Merged-chr8-106364446-2	chr8	106364344	106364544	+	745.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-26456.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	1.21	4.78	6.85	7.64	13.09	8.15	3.99	8.8	12.39	9.54	10.05	9.4
Merged-chr6-17595874-2	chr6	17595774	17595974	+	745.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41136.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	10.5	9.06	18.25	6.03	13.09	5.02	3.65	6.22	11.21	8.03	15.07	4.07
Merged-chr1-46087258-2	chr1	46087161	46087361	+	745.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160386, intron 6 of 65)	intron (NM_001160386, intron 6 of 65)	20523.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	3.23	3.02	6.85	6.44	1.64	10.03	8.97	7.51	9.83	9.04	10.55	2.51
Merged-chr17-34317452-2	chr17	34317363	34317563	+	745.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010382)	TTS (NM_010382)	-8212.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	8.48	9.06	11.41	6.03	6.55	2.82	3.99	2.24	22.62	10.04	13.06	14.72
Merged-chr15-59076481-3	chr15	59076373	59076573	+	745.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	5553.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	8.08	0.75	12.55	17.29	9.82	9.41	17.94	23.94	7.47	17.07	8.54	13.78
Merged-chr12-99297945-2	chr12	99297854	99298054	+	745.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	-135146.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	8.08	3.27	10.84	10.46	11.45	7.53	9.3	9.17	4.72	6.03	7.03	3.13
Merged-chr7-43512215-3	chr7	43512092	43512292	+	745.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6254.0	NM_028737	74054.0	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	12.92	8.05	11.41	4.83	7.36	17.87	8.64	8.3	8.26	16.07	15.58	4.7
Merged-chr5-79812248-2	chr5	79812155	79812355	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MURVY-int|LTR|ERV1	-1208316.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.02	1.51	3.99	7.24	9.41	5.64	8.64	14.8	8.26	6.03	12.06	5.95
Merged-chrX-9520188-1	chrX	9520088	9520288	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50864.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	3.63	3.52	3.42	4.42	7.77	7.21	5.65	8.94	4.72	4.52	8.54	5.33
Merged-chr3-146498845-2	chr3	146498734	146498934	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316756, intron 1 of 14)	B3A|SINE|B2	919.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	8.88	4.53	3.99	8.85	9.82	9.09	4.32	6.48	10.42	10.04	15.07	6.89
Merged-chr3-25713366-1	chr3	25713266	25713466	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357095, intron 4 of 6)	RLTR26|LTR|ERVK	440620.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	1.21	1.01	0.0	0.0	9.0	8.47	7.31	8.55	4.52	6.03	4.02	4.7
Merged-chr5-32007026-2	chr5	32006917	32007117	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 9 of 11)	MIRb|SINE|MIR	-129455.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.25	5.03	17.68	8.85	6.14	7.84	7.64	10.04	8.65	6.03	9.04	9.4
Merged-chr11-51059316-2	chr11	51059217	51059417	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347495)	promoter-TSS (NM_001347495)	60.0	NM_001347495	21408.0	Mm.4792	NM_009329	ENSMUSG00000020364	Zfp354a	AW488485|Tcf17|Znf354a|kid1	zinc finger protein 354A	protein-coding	4.44	1.51	4.56	8.04	7.36	10.66	6.98	10.68	6.69	11.05	9.55	2.82
Merged-chr1-157013193-3	chr1	157013083	157013283	+	745.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73557.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.65	6.79	4.56	9.65	15.96	11.92	16.61	18.48	11.21	5.02	11.05	6.89
Merged-chr12-21266664-1	chr12	21266564	21266764	+	745.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 26 of 26)	intron (NM_001004364, intron 26 of 26)	19620.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	6.46	6.29	3.99	9.65	4.5	11.92	14.62	5.94	2.95	4.02	0.0	1.57
Merged-chr16-23383104-1	chr16	23383004	23383204	+	745.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46029.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	4.04	6.29	2.28	4.02	9.0	7.53	4.98	6.42	6.29	2.01	6.03	4.7
Merged-chr8-109458227-2	chr8	109458145	109458345	+	745.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35782.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	1.21	5.79	3.99	11.66	2.05	8.47	4.65	9.9	1.18	5.02	8.54	6.89
Merged-chr11-108378240-3	chr11	108378120	108378320	+	745.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17077.0	NM_013475	11818.0	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	12.92	12.07	8.56	12.07	13.91	10.66	16.94	9.9	7.28	8.54	5.02	8.46
Merged-chr9-120491682-2	chr9	120491590	120491790	+	745.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-916.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	4.04	5.28	5.7	6.84	3.27	10.66	2.66	8.41	11.8	11.55	13.57	5.33
Merged-chrX-139616197-3	chrX	139616096	139616296	+	745.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023270, intron 1 of 6)	intron (NM_023270, intron 1 of 6)	5576.0	NM_023270	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	4.85	4.78	9.13	13.27	11.86	10.35	6.98	17.13	18.69	11.55	16.58	12.22
Merged-chr5-81156895-3	chr5	81156782	81156982	+	745.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	135289.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	9.69	7.04	12.55	10.86	4.91	2.51	6.31	7.4	8.46	14.06	22.61	7.52
Merged-chr1-118389932-3	chr1	118389825	118390025	+	745.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	867.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	12.52	6.79	4.56	8.45	7.77	10.98	9.3	9.17	8.65	11.05	8.04	10.96
Merged-chr7-3720384-2	chr7	3720282	3720482	+	745.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011095)	promoter-TSS (NM_011095)	0.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	6.06	6.04	0.0	1.21	0.0	0.0	0.0	0.0	11.21	9.04	18.09	6.58
Merged-chr6-33929900-3	chr6	33929749	33929949	+	745.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-99599.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	7.27	6.04	5.7	3.62	7.36	16.62	7.64	7.49	6.29	7.53	20.6	4.39
Merged-chr1-168431513-2	chr1	168431402	168431602	+	745.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291509, exon 1 of 7)	exon (NM_001291509, exon 1 of 7)	667.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	2.83	7.04	3.99	4.02	15.96	5.33	8.97	7.57	11.6	11.55	10.55	6.58
Merged-chr7-80375583-3	chr7	80375504	80375704	+	745.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4229.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	4.44	4.53	10.84	6.03	7.77	3.76	3.65	9.76	10.82	9.04	12.06	8.77
Merged-chr16-90924866-3	chr16	90924764	90924964	+	745.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026502)	TTS (NM_026502)	9985.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	14.54	5.53	6.85	10.05	17.18	16.31	7.64	23.13	6.88	7.03	25.63	7.52
Merged-chr4-122853295-2	chr4	122853195	122853395	+	745.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	17068.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	8.88	4.53	19.97	5.63	13.09	5.64	3.32	13.46	10.62	14.06	13.57	7.52
Merged-chr4-129585357-3	chr4	129585187	129585387	+	745.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6707.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	2.42	2.77	1.14	3.22	4.09	6.9	2.99	3.28	12.19	14.06	17.59	12.53
Merged-chr15-67172870-3	chr15	67172764	67172964	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	4018.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	8.88	4.28	15.4	9.25	12.27	15.37	10.3	10.93	11.6	8.03	18.09	6.89
Merged-chr3-108855018-2	chr3	108854917	108855117	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-14515.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	9.69	5.28	13.69	13.67	4.91	5.02	4.65	5.02	11.21	5.02	8.54	6.27
Merged-chr7-83643576-2	chr7	83643474	83643674	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001360089, exon 7 of 7)	3' UTR (NM_001360089, exon 7 of 7)	11557.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	12.52	3.77	10.84	4.02	12.68	11.92	6.64	4.23	15.54	5.52	10.55	2.51
Merged-chr19-60942029-1	chr19	60941929	60942129	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	52280.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.42	1.26	4.56	2.01	3.68	4.7	5.65	6.39	1.97	1.51	2.51	1.57
Merged-chr8-61907344-2	chr8	61907244	61907444	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4650.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.46	6.54	3.42	6.44	3.27	7.21	3.32	9.87	11.01	7.03	7.54	8.46
Merged-chr9-32034219-1	chr9	32034119	32034319	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81917.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.04	4.28	7.42	6.03	7.77	2.2	4.32	6.08	4.33	0.5	4.02	3.45
Merged-chr5-111028544-1	chr5	111028444	111028644	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	24400.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.04	6.29	5.7	6.44	9.82	9.41	9.97	11.47	8.26	6.53	5.53	4.07
Merged-chr10-96239082-1	chr10	96238982	96239182	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	12875.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.65	3.27	4.56	3.22	4.5	5.64	7.31	8.1	4.72	5.52	3.52	3.13
Merged-chr7-67431198-2	chr7	67431089	67431289	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58331.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	10.09	2.52	2.28	6.03	7.77	5.33	7.64	15.28	4.33	7.53	11.05	9.08
Merged-chr12-4133518-2	chr12	4133473	4133673	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138305)	promoter-TSS (NM_138305)	176.0	NM_001159536	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	3.63	8.8	2.85	6.03	4.5	9.41	9.63	4.93	4.52	13.05	7.03	2.19
Merged-chr9-24376799-2	chr9	24376701	24376901	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	126339.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.23	2.52	10.27	7.24	2.05	2.82	8.3	6.79	10.42	3.01	5.53	7.21
Merged-chr11-75458203-1	chr11	75458103	75458303	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3336.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	1.21	4.78	6.85	1.61	3.27	3.45	2.33	2.36	3.34	3.01	1.0	6.58
Merged-chr2-150784488-2	chr2	150784334	150784534	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2362.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.81	4.02	2.28	1.21	2.45	4.39	1.33	2.38	2.56	0.5	4.52	5.64
Merged-chr12-3737205-1	chr12	3737105	3737305	+	745.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-69775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.88	3.27	4.56	3.22	6.14	4.7	3.99	5.27	12.59	15.06	8.54	7.83
Merged-chr15-93251754-3	chr15	93251641	93251841	+	745.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23438.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	21.8	14.84	13.69	19.71	9.41	6.27	6.31	13.91	7.08	3.01	11.05	3.76
Merged-chr5-139288072-3	chr5	139288005	139288205	+	745.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	34608.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	8.88	4.53	6.85	4.02	7.36	10.03	2.99	9.14	10.23	10.54	4.52	8.14
Merged-chr4-32229497-1	chr4	32229397	32229597	+	745.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-187938.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.42	4.78	11.41	5.63	8.18	6.9	7.97	8.41	1.97	4.52	6.03	4.7
Merged-chr10-44565317-3	chr10	44565245	44565445	+	745.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106597.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	10.5	6.79	10.84	10.86	11.05	17.25	12.29	18.81	12.98	6.03	7.03	5.64
Merged-chr1-185364244-2	chr1	185364161	185364361	+	745.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	1217.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	6.86	4.02	9.13	7.24	7.36	6.9	6.98	9.5	2.75	2.51	2.01	10.96
Merged-chr5-32104332-2	chr5	32104244	32104444	+	745.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32128.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.04	3.52	10.27	4.42	11.86	7.21	10.3	11.86	8.46	9.04	13.57	3.45
Merged-chr13-114376712-3	chr13	114376611	114376811	+	745.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010887, intron 1 of 4)	L1MD2|LINE|L1	11383.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	2.02	7.29	20.54	13.67	11.45	10.98	13.62	7.15	21.24	13.05	13.57	12.53
Merged-chr4-105747927-3	chr4	105747828	105748028	+	745.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-493285.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	10.5	6.54	14.83	15.69	12.27	21.01	22.59	17.27	7.28	16.07	7.54	2.82
Merged-chr5-122207930-2	chr5	122207836	122208036	+	745.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1793.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	10.5	11.32	15.97	5.63	3.68	14.42	7.97	1.32	3.74	7.03	10.55	3.13
Merged-chr16-55731108-1	chr16	55731008	55731208	+	745.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91030.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.46	2.77	3.99	7.64	10.64	2.2	5.31	6.39	4.72	0.0	3.01	4.39
Merged-chr15-84325328-3	chr15	84325228	84325428	+	745.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	608.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	6.06	6.54	3.42	10.46	11.86	10.03	7.64	6.36	9.24	12.05	13.57	14.1
Merged-chr11-59226440-3	chr11	59226364	59226564	+	745.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1698.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	8.88	10.31	1.14	10.86	8.59	12.86	6.64	5.89	11.21	8.54	10.55	5.01
Merged-chr1-84533369-1	chr1	84533269	84533469	+	745.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 5 of 12)	intron (NM_152915, intron 5 of 12)	-162470.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	6.06	5.79	2.28	9.65	7.36	4.7	6.98	8.05	7.08	1.51	9.04	6.27
Merged-chr2-11599652-3	chr2	11599537	11599737	+	745.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3562.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	5.65	8.05	7.42	9.65	5.73	5.33	4.32	9.14	13.96	4.02	5.53	9.4
Merged-chr9-45243115-3	chr9	45243000	45243200	+	745.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	23607.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	3.23	9.06	13.69	7.24	13.5	2.82	12.29	14.72	9.83	11.55	13.57	12.84
Merged-chr11-100548279-3	chr11	100548188	100548388	+	745.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	2656.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	7.27	6.29	28.52	8.45	15.55	11.29	12.62	15.08	7.67	11.05	20.6	10.65
Merged-chr8-22814470-2	chr8	22814361	22814561	+	745.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8807.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	5.65	6.29	6.85	1.61	14.32	12.23	6.64	7.65	8.26	11.05	11.05	6.58
Merged-chr5-135951192-2	chr5	135951096	135951296	+	745.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16555.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	5.25	0.75	6.85	2.82	9.0	6.9	1.66	8.41	8.85	7.53	6.03	7.21
Merged-chr5-66259952-3	chr5	66259822	66260022	+	745.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027602)	promoter-TSS (NM_027602)	24.0	NM_001302834	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.04	9.06	3.99	7.64	5.32	6.59	8.3	7.91	16.92	10.04	18.59	8.46
Merged-chr14-14602123-3	chr14	14602015	14602215	+	745.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100910.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	10.5	9.56	6.28	21.72	13.91	7.21	6.64	15.98	28.13	10.54	11.05	9.08
Merged-chr11-95869682-3	chr11	95869548	95869748	+	745.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008081, intron 7 of 10)	intron (NM_008081, intron 7 of 10)	10831.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.48	13.33	6.85	3.22	11.05	19.13	7.64	4.57	25.57	24.6	17.59	7.21
Merged-chr8-85800378-3	chr8	85800290	85800490	+	745.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028007, intron 6 of 17)	intron (NM_028007, intron 6 of 17)	40559.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	8.08	8.55	7.42	8.85	9.0	3.14	3.99	15.73	11.01	11.05	11.56	15.04
Merged-chr10-84615729-3	chr10	84615634	84615834	+	745.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6703.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	6.86	7.29	9.7	7.24	13.09	13.48	4.98	6.53	8.46	4.52	15.07	4.7
Merged-chr19-45030685-4	chr19	45030494	45030694	+	745.170837	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195265, intron 10 of 15)	MIRb|SINE|MIR	12459.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	6.06	4.02	10.84	2.41	6.14	5.02	3.65	2.33	7.08	2.51	7.03	3.45
Merged-chr19-8989571-3	chr19	8989494	8989694	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	CpG	310.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	6.46	3.52	7.42	3.22	5.73	1.57	1.33	3.2	1.38	8.03	3.52	1.57
Merged-chr4-12275411-3	chr4	12275295	12275495	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-103380.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	2.42	2.26	9.13	13.27	8.59	7.53	13.29	12.45	15.93	4.52	6.53	8.14
Merged-chr17-31558194-3	chr17	31558135	31558335	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6538.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	4.44	6.29	7.99	5.63	11.86	4.7	10.96	8.5	9.64	13.56	3.52	6.58
Merged-chr12-8667669-3	chr12	8667589	8667789	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6445.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	13.73	7.55	19.4	7.24	10.23	16.31	8.64	13.96	10.23	7.03	17.08	7.83
Merged-chr9-99009769-2	chr9	99009692	99009892	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080776, intron 6 of 7)	B4A|SINE|B4	23419.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	6.06	5.53	4.56	2.82	6.14	4.7	5.98	5.94	12.98	5.02	5.53	7.21
Merged-chr9-118737341-2	chr9	118737229	118737429	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	25637.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.88	1.01	10.84	4.02	11.86	6.27	12.29	24.36	1.97	2.01	1.51	3.45
Merged-chr12-25089620-2	chr12	25089515	25089715	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6477.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	10.9	15.09	4.56	9.25	8.18	7.21	1.66	4.49	4.52	4.52	1.0	3.45
Merged-chr3-65523559-2	chr3	65523453	65523653	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4894.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	4.44	4.02	6.28	2.41	6.14	11.92	1.66	5.27	14.95	14.06	15.58	6.27
Merged-chr8-35826527-2	chr8	35826428	35826628	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027998)	promoter-TSS (NM_027998)	31.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.04	2.52	11.98	5.23	9.0	6.27	9.3	4.82	12.0	2.01	19.09	11.28
Merged-chr9-13761166-2	chr9	13761068	13761268	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_024025, intron 1 of 15)	ID_B1|SINE|B4	11987.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	12.11	5.79	4.56	12.47	8.18	8.78	8.3	14.94	1.38	9.04	7.54	8.77
Merged-chr4-105213427-2	chr4	105213319	105213519	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 4 of 5)	intron (NM_080555, intron 4 of 5)	56072.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.42	3.52	2.85	2.41	4.91	4.7	7.64	7.54	10.82	8.54	13.06	3.76
Merged-chr13-43806899-2	chr13	43806787	43806987	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21775.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.85	8.05	2.85	9.65	7.77	4.39	2.66	6.39	0.2	1.0	0.5	0.63
Merged-chr5-115556315-3	chr5	115556226	115556426	+	745.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133915)	TTS (NM_133915)	-3141.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	11.71	7.29	7.99	8.04	14.73	11.29	5.98	6.79	8.85	12.05	10.55	6.27
Merged-chr2-93333618-3	chr2	93333545	93333745	+	745.116638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183180, intron 1 of 9)	CpG	842.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	8.08	8.8	1.71	9.65	13.09	13.8	3.65	13.32	13.18	10.54	19.09	8.77
Merged-chr6-31033231-3	chr6	31033143	31033343	+	745.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	29504.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	12.11	3.02	10.27	9.65	6.14	10.03	5.65	6.64	11.6	22.09	10.05	14.72
Merged-chr12-17253229-3	chr12	17253129	17253329	+	745.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-13366.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	10.09	8.55	3.99	8.85	12.27	15.37	3.99	10.07	17.51	13.56	12.06	8.77
Merged-chr9-119064526-2	chr9	119064422	119064622	+	745.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	11744.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	3.23	5.28	3.99	2.01	8.18	5.64	2.99	7.12	9.64	15.57	15.07	9.08
Merged-chr15-85710387-3	chr15	85710293	85710493	+	745.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3074.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	10.09	6.79	7.42	4.02	3.68	10.98	4.65	12.64	11.6	13.56	12.06	8.14
Merged-chr15-38693360-2	chr15	38693249	38693449	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025494)	TTS (NM_025494)	31445.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.23	3.27	4.56	1.61	14.32	9.41	13.29	15.64	12.78	8.54	3.01	2.82
Merged-chr5-3212937-1	chr5	3212837	3213037	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-130956.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.42	2.77	3.42	4.02	12.68	5.02	5.31	8.02	1.57	3.01	3.01	3.13
Merged-chr3-122394122-1	chr3	122394022	122394222	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25635.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	4.44	0.5	10.27	4.83	4.09	5.64	2.33	7.23	1.57	0.0	1.0	1.25
Merged-chr8-121909919-2	chr8	121909816	121910016	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033485, intron 1 of 1)	intron (NM_001033485, intron 1 of 1)	2083.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	10.5	3.77	1.71	4.02	3.27	10.98	0.0	9.28	11.8	8.03	9.04	5.33
Merged-chr5-22896012-1	chr5	22895912	22896112	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-149128.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	7.27	2.52	6.28	13.27	0.0	1.88	0.66	0.08	14.55	6.03	6.53	9.08
Merged-chr3-21983186-1	chr3	21983086	21983286	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-93466.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.63	7.29	10.27	13.27	11.05	7.84	6.98	7.99	8.06	8.03	17.59	5.01
Merged-chr1-54826074-1	chr1	54825974	54826174	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	100313.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.04	3.02	8.56	9.25	2.05	6.27	5.65	7.26	3.93	1.0	14.07	3.76
Merged-chr2-145122315-1	chr2	145122215	145122415	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-45460.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	6.95	30.42	9.97	2.3	1.57	0.0	0.5	0.63
Merged-chr9-101037354-1	chr9	101037254	101037454	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2470.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	3.23	6.79	0.0	6.44	4.5	5.64	3.32	0.73	1.97	0.0	1.0	0.94
Merged-chr1-133025923-1	chr1	133025823	133026023	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	-507.0	NM_001302801	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	9.29	3.27	9.7	5.63	6.14	8.15	1.99	9.67	10.03	6.53	5.53	8.46
Merged-chr4-135763896-1	chr4	135763796	135763996	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085509, intron 3 of 36)	intron (NM_001085509, intron 3 of 36)	4181.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	4.85	3.77	6.28	4.42	3.27	8.78	3.99	5.41	7.47	2.51	5.02	6.27
Merged-chr4-88698976-3	chr4	88698898	88699098	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7730.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	10.09	4.78	10.27	9.65	11.45	5.64	7.97	11.24	18.1	14.06	14.57	10.02
Merged-chr6-116077888-1	chr6	116077788	116077988	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-82883.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.65	2.26	3.42	3.62	4.91	8.47	4.98	5.83	2.16	1.0	1.51	3.45
Merged-chr14-22801979-1	chr14	22801879	22802079	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	(T)n|Simple_repeat|Simple_repeat	-259181.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	6.06	8.05	10.84	3.62	5.32	5.33	0.66	3.62	11.41	4.52	5.53	9.71
Merged-chr12-81780742-1	chr12	81780642	81780842	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177395, exon 1 of 8)	exon (NM_177395, exon 1 of 8)	428.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.86	3.77	2.85	10.05	4.09	5.33	4.65	8.52	7.47	12.05	7.54	2.19
Merged-chrX-49281340-1	chrX	49281240	49281440	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	intron (NM_001271449, intron 2 of 15)	6902.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.0	1.01	0.0	1.61	5.73	1.57	1.66	0.93	16.52	10.04	7.54	3.76
Merged-chr12-79135083-1	chr12	79134983	79135183	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	4295.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	1.62	1.51	0.0	0.8	8.18	8.78	5.65	6.03	2.16	3.51	1.0	3.45
Merged-chr19-41051890-1	chr19	41051790	41051990	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001043228, intron 8 of 10)	intron (NM_001043228, intron 8 of 10)	22615.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	2.83	2.77	10.27	9.25	2.05	4.08	8.97	6.64	4.13	4.52	12.06	14.1
Merged-chr1-173491282-1	chr1	173491182	173491382	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44675.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.0	0.25	0.57	0.8	0.0	1.25	2.66	4.4	7.67	12.55	14.07	4.39
Merged-chr9-20467212-2	chr9	20467090	20467290	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR55|LTR|ERVL?	-7030.0	NM_001357809	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	5.65	6.29	6.28	5.63	3.68	5.96	2.66	6.42	8.65	14.06	11.05	3.76
Merged-chr6-4811450-1	chr6	4811350	4811550	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64144.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.85	6.04	3.42	1.61	1.64	5.64	5.31	4.68	2.95	4.02	2.51	7.52
Merged-chr9-47772902-2	chr9	47772755	47772955	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	45353.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	7.27	3.27	1.71	3.22	6.55	7.84	5.65	5.92	6.88	8.03	8.54	7.21
Merged-chr3-131862265-1	chr3	131862165	131862365	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-223027.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	3.52	1.71	4.02	2.45	2.2	2.33	2.3	6.29	6.53	16.08	8.14
Merged-chr14-117761287-1	chr14	117761187	117761387	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	X1_LINE|LINE|CR1	192560.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	5.65	5.79	10.27	2.82	1.64	7.53	2.99	10.79	8.26	5.52	16.58	1.88
Merged-chr11-4594320-2	chr11	4594223	4594423	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	CpG	492.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	8.88	13.08	10.84	7.24	14.32	10.35	18.93	8.55	17.9	16.57	19.6	17.23
Merged-chr18-46162042-1	chr18	46161942	46162142	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	36776.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	1.62	1.01	3.42	4.83	0.41	1.88	2.66	3.59	11.6	4.02	12.56	2.19
Merged-chr1-151039393-2	chr1	151039288	151039488	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-45953.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	2.83	3.52	5.13	7.24	7.77	3.45	6.98	7.88	11.8	9.54	15.07	3.76
Merged-chrX-134582406-1	chrX	134582306	134582506	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 1 of 18)	intron (NM_013482, intron 1 of 18)	734.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	2.83	5.79	4.56	1.61	4.09	5.33	5.31	7.37	5.31	1.0	6.03	3.13
Merged-chr1-180901271-2	chr1	180901162	180901362	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3012.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	5.65	11.07	6.85	2.41	5.73	6.27	3.32	6.0	10.23	14.56	5.53	6.27
Merged-chr14-61294793-1	chr14	61294693	61294893	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033788, exon 2 of 3)	non-coding (NR_033788, exon 2 of 3)	10541.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	1.21	3.02	0.0	2.01	2.86	1.88	2.99	2.27	2.95	4.52	5.53	5.64
Merged-chr13-12210479-3	chr13	12210362	12210562	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 22 of 32)	intron (NM_001081128, intron 22 of 32)	-23974.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	12.92	3.27	5.7	6.03	9.0	6.27	3.99	7.09	10.62	8.03	8.54	10.02
Merged-chr10-88503648-1	chr10	88503548	88503748	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001146690, exon 1 of 9)	exon (NM_001146690, exon 1 of 9)	322.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	10.9	19.62	17.11	14.88	3.68	14.11	15.28	14.22	11.01	9.54	18.09	15.66
Merged-chr1-40266067-1	chr1	40265967	40266167	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001123382)	promoter-TSS (NM_001123382)	-519.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.81	1.01	5.7	3.22	6.95	3.45	3.32	6.76	2.16	1.0	0.0	6.89
Merged-chr8-126863928-1	chr8	126863828	126864028	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	14908.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.81	1.51	4.56	3.22	3.27	8.15	7.64	6.03	1.57	2.51	6.03	3.45
Merged-chr16-33996322-2	chr16	33996224	33996424	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-29286.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	9.69	3.27	6.28	8.85	6.55	17.56	6.64	11.55	17.7	10.04	17.59	9.71
Merged-chr2-131083029-1	chr2	131082929	131083129	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011426, intron 5 of 20)	intron (NM_011426, intron 5 of 20)	3736.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	1.62	2.52	1.14	0.8	6.55	2.2	2.99	4.18	1.18	2.51	4.02	1.88
Merged-chr4-129067764-3	chr4	129067670	129067870	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9499.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.46	8.55	3.99	0.8	6.95	8.15	3.32	5.27	14.55	11.55	6.03	4.39
Merged-chr4-86657788-1	chr4	86657688	86657888	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 7 of 7)	intron (NM_007408, intron 7 of 7)	12271.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.81	2.77	2.85	0.0	8.59	4.39	11.29	8.97	6.88	2.51	6.03	4.07
Merged-chr3-56575586-2	chr3	56575497	56575697	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-391896.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	10.9	9.31	9.7	7.64	13.91	7.21	6.98	16.91	1.97	2.01	0.5	4.07
Merged-chr12-102461298-1	chr12	102461198	102461398	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7836.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	5.65	1.01	2.28	2.41	6.55	7.84	2.33	6.81	8.06	2.51	6.03	5.64
Merged-chr1-150405644-1	chr1	150405544	150405744	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133780, intron 7 of 51)	intron (NM_133780, intron 7 of 51)	-12564.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	2.02	2.52	4.56	4.42	4.91	5.33	1.0	9.14	5.11	5.02	20.6	4.07
Merged-chr9-13467266-1	chr9	13467166	13467366	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35905.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	6.46	6.04	4.56	3.22	4.91	4.08	3.32	9.81	3.34	2.51	4.02	3.45
Merged-chr6-108408347-3	chr6	108408275	108408475	+	744.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-81368.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.85	5.53	3.99	9.25	5.32	9.41	7.31	10.54	26.95	13.05	15.58	13.16
Merged-chr10-85502396-3	chr10	85502309	85502509	+	744.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-96002.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	12.52	2.52	3.99	10.05	11.05	11.29	6.98	5.07	47.99	45.19	41.71	9.71
Merged-chr6-136979510-3	chr6	136979487	136979687	+	744.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25064.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.44	3.02	7.42	6.84	6.14	5.96	11.63	9.67	10.23	4.52	12.56	7.52
Merged-chr5-125052362-3	chr5	125052247	125052447	+	744.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	48872.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	8.48	8.05	14.26	1.61	13.5	20.38	10.63	7.74	9.64	8.03	7.54	9.71
Merged-chr13-23685664-3	chr13	23685493	23685693	+	744.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290380)	TTS (NM_001290380)	1394.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	4.04	5.03	6.28	12.87	9.0	6.9	4.32	5.61	8.65	7.53	16.08	13.16
Merged-chr13-99306382-3	chr13	99306280	99306480	+	744.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38298.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	16.56	8.8	11.41	10.86	11.45	13.8	6.31	15.98	12.39	13.05	10.55	5.95
Merged-chr13-49108624-3	chr13	49108515	49108715	+	744.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	39713.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	24.63	7.29	12.55	11.66	5.73	8.78	10.63	8.38	16.33	10.04	8.54	11.28
Merged-chr6-129211550-2	chr6	129211437	129211637	+	744.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26508.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	5.65	8.05	13.69	16.89	5.32	4.7	1.99	11.33	17.31	11.05	20.1	6.27
Merged-chr9-108843112-3	chr9	108843011	108843211	+	744.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359573, exon 25 of 36)	exon (NM_001359573, exon 25 of 36)	-10932.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	5.25	9.06	10.27	8.04	6.95	12.86	5.31	9.45	19.08	10.04	33.67	14.41
Merged-chr7-44590793-3	chr7	44590750	44590950	+	744.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290682)	promoter-TSS (NM_001290682)	-36.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	8.48	4.02	0.57	2.01	10.64	9.72	10.63	8.16	7.47	6.53	11.56	2.51
Merged-chr13-113553793-3	chr13	113553692	113553892	+	744.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-50948.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	12.11	7.04	3.42	7.64	14.32	7.53	7.97	9.5	10.23	4.02	11.05	4.7
Merged-chr1-26688147-2	chr1	26688034	26688234	+	744.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-674.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	8.08	13.58	5.7	13.67	8.18	4.08	3.99	5.66	6.29	8.03	4.02	4.07
Merged-chr19-34800042-2	chr19	34799966	34800166	+	744.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20707.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	8.88	5.79	3.99	9.25	10.23	5.33	11.29	9.7	5.51	8.03	14.07	5.33
Merged-chr10-125274605-2	chr10	125274517	125274717	+	744.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34199.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	8.48	6.04	17.11	8.85	7.77	5.64	8.3	14.83	6.88	3.01	5.53	4.07
Merged-chr11-115058905-1	chr11	115058805	115059005	+	744.833313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3134.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	14.94	7.55	19.4	15.28	2.45	6.59	1.99	3.36	7.67	3.51	6.03	5.33
Merged-chr15-60823842-2	chr15	60823732	60823932	+	744.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162926, exon 2 of 2)	exon (NM_001162926, exon 2 of 2)	867.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	6.46	7.29	4.56	14.48	9.82	5.64	7.97	11.07	2.75	7.03	4.02	9.4
Merged-chr18-80729512-3	chr18	80729403	80729603	+	744.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16432.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	17.36	9.81	5.7	8.04	13.91	19.76	4.32	5.36	11.01	8.54	14.57	10.02
Merged-chr4-141663129-3	chr4	141663052	141663252	+	744.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	963.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	8.48	8.8	15.97	10.46	16.77	5.02	7.64	8.64	6.29	8.03	13.06	6.27
Merged-chr8-126588022-3	chr8	126587882	126588082	+	744.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164598)	TTS (NM_001164598)	5454.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.27	6.54	7.42	2.82	6.55	8.47	5.98	5.83	9.64	6.03	5.02	2.51
Merged-chr4-25273415-2	chr4	25273329	25273529	+	744.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026194, intron 6 of 18)	L1MC4|LINE|L1	8392.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	4.04	3.77	9.7	6.44	10.23	7.21	7.64	10.57	7.47	9.04	16.08	9.71
Merged-chr10-7598355-1	chr10	7598255	7598455	+	744.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172784, intron 2 of 6)	L3b|LINE|CR1	8555.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	1.62	5.03	6.85	3.22	7.36	8.15	6.64	8.38	3.93	7.03	11.56	5.64
Merged-chr3-30862083-2	chr3	30861981	30862181	+	744.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	6131.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	1.21	5.28	6.85	8.85	11.86	9.09	7.97	18.73	12.78	19.08	11.56	8.46
Merged-chr17-36431617-3	chr17	36431521	36431721	+	744.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30708.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	2.83	8.55	10.84	5.23	16.77	11.6	8.64	14.86	7.67	9.04	14.57	12.84
Merged-chr16-30602879-2	chr16	30602772	30602972	+	744.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177632)	TTS (NM_177632)	3149.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	13.73	4.78	3.42	8.45	8.59	13.48	7.64	5.64	3.54	4.52	3.01	1.25
Merged-chr1-156454584-1	chr1	156454484	156454684	+	744.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	19744.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.85	1.26	9.13	2.82	7.77	3.76	6.64	5.97	4.13	1.51	3.01	2.82
Merged-chr13-105340993-3	chr13	105340881	105341081	+	744.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46496.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	7.67	3.52	6.85	6.84	11.05	10.03	9.63	21.95	10.62	7.03	13.06	10.02
Merged-chr15-78826775-3	chr15	78826691	78826891	+	744.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15856.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	11.31	7.29	11.41	4.83	13.91	11.6	5.31	6.76	21.83	10.54	10.05	6.89
Merged-chr13-68605855-1	chr13	68605755	68605955	+	744.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027035, intron 1 of 2)	GA-rich|Low_complexity|Low_complexity	8416.0	NM_027035	69315.0	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	2.83	1.51	6.28	4.42	14.32	10.03	8.64	5.21	4.52	7.53	13.57	2.82
Merged-chr17-24667539-1	chr17	24667439	24667639	+	744.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2148.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	2.83	4.53	3.42	1.61	5.73	2.2	3.99	4.04	2.95	8.03	3.52	0.94
Merged-chr2-118545369-3	chr2	118545285	118545485	+	744.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138603)	promoter-TSS (NR_138603)	-798.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.06	5.03	11.41	11.26	16.36	9.09	5.65	16.09	12.19	8.03	12.06	11.59
Merged-chr10-67597744-2	chr10	67597623	67597823	+	744.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25764.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	1.62	1.76	5.7	4.83	9.41	2.2	4.32	12.48	7.08	6.53	2.51	9.08
Merged-chr18-9841272-2	chr18	9841164	9841364	+	744.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 3 of 9)	intron (NM_130449, intron 3 of 9)	-116916.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	15.34	4.28	3.42	8.85	14.73	10.35	9.63	21.17	1.77	0.0	3.01	0.94
Merged-chr14-76702249-2	chr14	76702139	76702339	+	744.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24671.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	6.86	4.02	5.7	5.23	1.64	8.15	3.32	5.41	12.78	9.54	7.54	10.96
Merged-chr4-150367039-2	chr4	150366921	150367121	+	744.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	85105.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.06	4.53	6.85	8.04	6.55	8.15	4.65	5.16	9.44	6.53	12.06	3.45
Merged-chr15-80671595-2	chr15	80671490	80671690	+	744.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145986)	promoter-TSS (NM_145986)	-257.0	NM_145986	213956.0	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	14.94	6.04	9.7	0.8	6.55	10.03	8.3	17.64	6.69	7.03	12.56	3.76
Merged-chr11-17727827-2	chr11	17727727	17727927	+	744.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	226048.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	5.25	6.04	9.7	10.46	14.73	6.59	13.95	25.74	1.57	11.05	7.54	1.25
Merged-chr10-100948679-3	chr10	100948583	100948783	+	744.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207048.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	8.08	5.79	10.27	6.84	8.18	15.37	10.63	9.98	16.13	10.04	15.07	4.7
Merged-chr14-25483449-3	chr14	25483348	25483548	+	744.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	24263.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	11.31	7.04	11.41	9.25	12.27	11.29	6.64	11.21	12.19	1.51	13.57	5.01
Merged-chr11-117878438-2	chr11	117878347	117878547	+	744.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4921.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	8.08	3.52	11.98	14.88	10.64	9.72	9.97	20.05	6.1	8.54	8.54	9.71
Merged-chr3-84657481-2	chr3	84657380	84657580	+	744.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8712.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	7.27	3.77	3.99	12.47	8.59	6.27	5.31	6.31	11.01	5.52	13.06	6.58
Merged-chr15-80260839-2	chr15	80260740	80260940	+	744.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175109, exon 4 of 4)	3' UTR (NM_175109, exon 4 of 4)	3466.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	4.04	9.81	2.85	1.21	10.64	6.27	7.64	5.38	12.98	15.06	11.05	5.33
Merged-chr1-63130079-3	chr1	63129989	63130189	+	744.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045914, intron 1 of 3)	ERVB7_1-LTR_MM|LTR|ERVK	15349.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	12.11	5.79	9.13	13.67	9.0	12.23	4.98	8.16	12.39	12.55	12.56	8.14
Merged-chr11-69396782-3	chr11	69396677	69396877	+	744.571411	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030083)	TTS (NM_030083)	986.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	8.08	7.8	7.99	4.83	9.41	8.78	8.64	6.98	12.98	11.55	11.56	10.34
Merged-chr13-24338028-3	chr13	24337939	24338139	+	744.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	10635.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	10.09	11.32	10.84	2.41	6.55	6.59	6.98	8.16	9.83	13.56	16.08	11.9
Merged-chr4-138884424-3	chr4	138884297	138884497	+	744.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6455.0	NM_012044	26970.0	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	12.92	8.8	4.56	4.42	9.82	15.37	6.98	4.01	8.26	14.06	10.55	8.46
Merged-chr5-117356008-1	chr5	117355908	117356108	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1297.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	9.29	4.02	2.85	2.41	7.36	7.21	9.3	2.41	10.03	6.03	3.52	5.33
Merged-chr6-146796050-2	chr6	146795945	146796145	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9485.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	4.04	7.04	9.13	6.03	5.32	6.9	5.65	9.5	4.33	8.54	11.05	11.59
Merged-chr2-77343394-1	chr2	77343294	77343494	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62802.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	1.21	3.02	3.42	6.84	3.27	5.02	5.65	10.68	3.93	1.0	12.06	10.34
Merged-chr19-10860334-1	chr19	10860234	10860434	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133804, exon 9 of 11)	exon (NM_133804, exon 9 of 11)	9445.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	5.65	7.55	6.28	7.64	15.14	8.47	6.31	7.63	6.49	6.53	5.53	14.41
Merged-chr12-91109565-1	chr12	91109465	91109665	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_030473)	promoter-TSS (NR_030473)	-664.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	4.04	0.75	0.0	4.83	6.95	1.25	6.98	8.97	1.18	4.02	8.04	3.76
Merged-chr17-34001237-2	chr17	34001145	34001345	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-898.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.23	5.03	2.28	3.22	10.64	9.09	1.33	3.42	26.75	22.59	12.56	16.92
Merged-chr1-183439249-2	chr1	183439138	183439338	+	744.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19990.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	8.48	6.04	3.42	13.67	15.96	10.03	2.99	9.73	5.11	6.03	7.03	9.08
Merged-chr16-33832102-2	chr16	33832003	33832203	+	744.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	2438.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	13.73	9.06	3.42	6.03	7.77	6.9	3.32	6.84	11.01	5.52	16.08	2.51
Merged-chr17-78197345-1	chr17	78197245	78197445	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2903.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.63	3.77	1.71	2.82	6.55	2.82	6.31	5.07	7.28	7.03	3.01	3.45
Merged-chr19-34199142-1	chr19	34199042	34199242	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6208.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.48	6.04	3.42	8.04	4.91	4.39	5.65	7.6	6.1	4.02	5.02	6.27
Merged-chr8-95488182-1	chr8	95488082	95488282	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009974, intron 1 of 11)	intron (NM_009974, intron 1 of 11)	638.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	6.46	1.76	2.28	1.61	6.14	2.51	5.98	0.59	3.54	2.51	2.51	7.21
Merged-chr11-106158265-1	chr11	106158165	106158365	+	744.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	1662.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	2.83	6.29	6.28	10.05	1.64	3.76	4.98	2.44	10.82	6.53	9.04	9.4
Merged-chrX-155174851-1	chrX	155174751	155174951	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-27002.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	1.62	2.77	2.28	6.03	5.73	6.59	2.99	9.0	5.7	4.02	9.04	3.13
Merged-chr1-132135834-2	chr1	132135730	132135930	+	744.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008795, intron 1 of 15)	MIRb|SINE|MIR	3855.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	3.23	8.3	19.4	9.65	11.45	17.25	8.97	18.08	7.08	11.05	7.03	10.02
Merged-chr19-46467242-2	chr19	46467113	46467313	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-34435.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.21	1.26	8.56	3.22	9.41	5.64	4.32	8.19	6.69	12.05	12.06	3.45
Merged-chr1-85962253-1	chr1	85962153	85962353	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1198.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	4.04	4.02	1.14	0.8	6.14	9.09	2.99	7.93	4.72	12.05	6.53	4.07
Merged-chr5-125363495-1	chr5	125363395	125363595	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22401.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.65	1.76	6.28	6.44	11.05	3.76	6.98	5.83	3.15	3.01	4.52	5.33
Merged-chr6-70806125-3	chr6	70806057	70806257	+	744.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13982.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	10.09	13.33	9.7	7.64	9.0	10.98	2.66	6.81	11.8	22.09	16.08	10.96
Merged-chrX-152352961-3	chrX	152352851	152353051	+	744.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359450, intron 1 of 1)	intron (NM_001359450, intron 1 of 1)	-10467.0	NM_001358369	52808.0	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	12.52	8.3	15.4	8.45	9.0	15.68	5.65	17.24	11.21	10.54	12.06	6.58
Merged-chr15-103347408-3	chr15	103347307	103347507	+	744.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314041, intron 28 of 30)	intron (NM_001314041, intron 28 of 30)	3118.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	16.56	10.31	13.12	6.44	8.59	11.6	3.32	5.33	11.21	4.52	13.57	6.89
Merged-chr1-180771501-2	chr1	180771396	180771596	+	744.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42109.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	8.88	5.53	7.42	6.03	5.73	11.29	5.31	8.07	12.39	12.05	12.56	9.71
Merged-chr10-24645324-3	chr10	24645231	24645431	+	744.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008813, exon 24 of 25)	exon (NM_008813, exon 24 of 25)	49889.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.46	7.8	5.7	11.26	13.09	11.29	13.29	19.23	12.59	8.03	14.57	8.14
Merged-chr13-110747631-2	chr13	110747521	110747721	+	744.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155878.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	4.44	4.78	10.84	12.07	16.36	11.6	7.64	12.14	4.33	5.52	5.53	3.45
Merged-chr6-65671607-2	chr6	65671504	65671704	+	744.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172399)	promoter-TSS (NM_172399)	-7.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	4.44	9.81	10.27	10.46	12.27	1.88	9.63	8.94	7.28	4.02	6.53	2.82
Merged-chr5-123155632-2	chr5	123155533	123155733	+	744.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 7 of 16)	B3|SINE|B2	13440.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	6.86	3.52	11.41	6.03	9.0	3.45	5.31	9.87	8.26	17.57	13.06	13.16
Merged-chr2-94266112-2	chr2	94265978	94266178	+	744.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4679.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	3.23	2.52	2.85	2.41	4.5	2.2	1.66	8.44	5.11	15.06	13.57	11.9
Merged-chr5-111049796-2	chr5	111049678	111049878	+	744.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	45634.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	8.88	8.55	7.42	10.86	9.82	9.72	3.99	4.35	6.29	2.51	4.52	4.7
Merged-chr16-94245579-2	chr16	94245488	94245688	+	744.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	44703.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.63	8.55	8.56	4.02	6.14	14.74	5.31	5.58	5.7	13.05	13.06	10.02
Merged-chr4-129555693-2	chr4	129555611	129555811	+	744.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162432, exon 9 of 13)	exon (NM_001162432, exon 9 of 13)	2100.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	2.83	9.31	4.56	1.21	5.73	6.27	6.64	4.68	6.49	5.02	4.02	5.33
Merged-chr6-134994390-2	chr6	134994330	134994530	+	744.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12429.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	6.06	6.04	7.99	5.23	5.32	10.03	14.95	20.16	5.31	2.01	11.56	2.82
Merged-chr17-87264364-3	chr17	87264268	87264468	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	1579.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	9.29	5.03	8.56	6.44	1.23	6.59	10.3	9.59	4.52	4.02	10.55	6.58
Merged-chr18-60881494-3	chr18	60881382	60881582	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30758.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	8.88	12.58	7.99	7.64	3.27	11.92	6.64	11.16	10.62	0.5	10.55	4.07
Merged-chr7-74974655-3	chr7	74974563	74974763	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55548.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	4.04	4.53	12.55	16.09	9.0	5.64	7.64	6.93	12.59	13.05	28.64	13.47
Merged-chr6-83685796-3	chr6	83685616	83685816	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7859.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.44	6.04	12.55	2.01	11.86	6.59	13.95	16.96	5.31	1.0	4.02	8.14
Merged-chr16-50534070-1	chr16	50533970	50534170	+	744.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	ORR1B2|LTR|ERVL-MaLR	5568.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	5.25	2.52	0.0	0.8	10.64	4.7	4.98	8.24	3.93	2.51	4.02	2.51
Merged-chr9-119261954-3	chr9	119261845	119262045	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 9 of 18)	intron (NM_001359582, intron 9 of 18)	-30253.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	8.48	7.04	13.69	6.84	9.82	9.41	10.3	17.83	13.37	7.03	10.55	9.4
Merged-chr13-41583809-3	chr13	41583658	41583858	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEb|LINE|L1	-22458.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	9.69	3.52	5.13	12.07	6.14	5.02	4.65	5.21	12.0	8.54	8.04	5.95
Merged-chr9-55277759-1	chr9	55277659	55277859	+	744.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	5866.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	2.02	4.02	5.7	3.22	6.14	8.78	5.65	10.23	5.9	9.04	6.03	5.01
Merged-chr3-107867238-3	chr3	107867147	107867347	+	744.327759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9983.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	8.88	8.55	7.99	15.28	6.55	14.74	5.31	13.04	8.06	10.04	18.59	9.08
Merged-chr11-68502608-2	chr11	68502502	68502702	+	744.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-417.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.65	5.79	4.56	10.46	20.05	8.47	6.98	7.35	10.23	12.55	12.56	10.65
Merged-chr10-119079452-2	chr10	119079350	119079550	+	744.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13455.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	7.27	8.3	2.85	2.01	15.14	9.72	5.31	8.36	9.05	3.51	14.57	9.08
Merged-chr12-32200888-2	chr12	32200767	32200967	+	744.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146201, exon 3 of 11)	exon (NM_001146201, exon 3 of 11)	7471.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.44	9.06	9.7	3.62	12.68	16.31	5.98	5.05	6.29	8.54	3.52	5.33
Merged-chr2-155284851-2	chr2	155284763	155284963	+	744.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004721, intron 11 of 11)	intron (NM_001004721, intron 11 of 11)	8499.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	4.85	4.53	15.4	18.1	2.86	0.63	3.32	2.36	9.05	5.52	17.59	20.05
Merged-chr16-90221885-2	chr16	90221756	90221956	+	744.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1114.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	2.83	5.79	3.42	10.46	4.09	4.39	5.65	9.34	10.03	10.04	11.05	6.27
Merged-chr4-149049731-2	chr4	149049628	149049828	+	744.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50084.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	18.57	4.78	14.83	16.09	9.0	9.72	4.98	8.86	5.31	5.52	1.51	4.39
Merged-chr8-56277358-3	chr8	56277250	56277450	+	744.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17202.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	7.67	7.55	3.99	2.41	10.64	5.96	12.95	15.11	23.21	10.54	15.07	7.52
Merged-chr3-127560724-3	chr3	127560653	127560853	+	744.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197997, intron 4 of 25)	intron (NM_197997, intron 4 of 25)	7264.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	8.88	6.79	11.98	3.22	6.95	5.02	7.64	9.11	11.8	6.53	21.1	8.46
Merged-chrX-106140327-1	chrX	106140227	106140427	+	744.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2948.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	8.88	1.26	7.99	2.82	6.95	8.15	6.64	12.48	5.7	0.5	6.03	2.82
Merged-chr10-43702582-3	chr10	43702469	43702669	+	744.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43589.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	6.46	9.06	9.7	2.41	14.73	18.19	8.97	11.19	13.18	13.56	15.07	8.77
Merged-chr8-104099155-2	chr8	104099043	104099243	+	744.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131138, intron 1 of 2)	B3|SINE|B2	-2482.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	10.09	3.77	8.56	4.02	4.5	4.08	3.65	8.33	21.83	8.03	13.57	5.64
Merged-chr5-25223567-3	chr5	25223477	25223677	+	744.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	705.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	7.67	7.8	9.13	5.23	9.0	7.53	9.63	14.83	12.78	14.56	21.1	15.35
Merged-chr1-152838202-3	chr1	152838109	152838309	+	744.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001359257, exon 24 of 24)	3' UTR (NM_001359257, exon 24 of 24)	38056.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	6.46	6.29	15.97	17.29	13.5	9.09	11.29	7.91	8.46	6.03	16.58	7.83
Merged-chr7-25766297-2	chr7	25766213	25766413	+	744.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 14 of 19)	LTR33A|LTR|ERVL	-11554.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	2.42	0.75	6.28	4.02	5.73	9.09	7.31	9.2	9.05	1.51	7.54	9.4
Merged-chr10-75798524-2	chr10	75798411	75798611	+	744.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	73.0	NM_008185	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	12.52	7.8	6.85	9.25	9.41	6.27	12.95	8.02	2.75	3.51	7.54	10.34
Merged-chr9-47616614-2	chr9	47616507	47616707	+	744.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	86255.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.25	2.77	12.55	10.86	12.68	5.96	8.64	12.48	4.13	3.51	4.52	5.64
Merged-chr12-8320220-3	chr12	8320118	8320318	+	744.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021429, intron 2 of 6)	intron (NM_021429, intron 2 of 6)	6785.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	7.67	9.06	8.56	6.03	13.09	5.33	5.31	7.96	12.78	11.05	15.58	3.76
Merged-chr8-83081881-3	chr8	83081778	83081978	+	744.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	MTE2a|LTR|ERVL-MaLR	-83474.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	9.29	9.81	6.85	9.65	26.18	11.29	7.64	12.0	11.6	15.06	8.54	4.39
Merged-chr5-130204769-2	chr5	130204668	130204868	+	744.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14976.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	4.85	6.04	7.42	6.44	11.05	8.78	6.98	12.06	11.01	8.54	14.57	10.65
Merged-chr15-25445961-2	chr15	25445855	25446055	+	744.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	31763.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	8.88	9.81	4.56	7.24	9.41	11.92	4.98	11.21	4.52	9.54	8.54	4.07
Merged-chr1-64615861-6	chr1	64615826	64616026	+	744.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025964, intron 1 of 2)	intron (NM_025964, intron 1 of 2)	1242.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	10.9	7.04	3.99	6.03	4.09	5.96	6.98	10.63	12.78	5.52	5.53	5.01
Merged-chr5-118269178-3	chr5	118269063	118269263	+	744.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23936.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	3.63	9.31	24.53	5.23	9.82	9.09	6.98	11.13	8.46	8.54	7.03	4.7
Merged-chr12-79807885-3	chr12	79807766	79807966	+	744.061096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	116867.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	10.09	5.79	15.4	7.24	13.5	16.93	5.65	4.54	15.93	9.04	9.04	8.46
Merged-chr3-97824906-3	chr3	97824804	97825004	+	744.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-56890.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	7.27	9.31	9.13	8.04	10.64	13.17	5.31	7.23	7.28	14.56	15.58	3.45
Merged-chr5-63906699-3	chr5	63906607	63906807	+	744.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62190.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	9.69	6.04	7.42	9.25	9.82	10.66	11.96	10.4	11.41	18.08	25.63	5.01
Merged-chr11-36947103-1	chr11	36947003	36947203	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-2862.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.23	1.01	2.28	5.63	0.41	3.76	7.64	8.16	3.34	4.02	7.03	1.25
Merged-chr13-24697101-1	chr13	24697001	24697201	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080381, intron 13 of 14)	UCON28c|Unknown|Unknown	58453.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	2.83	3.77	4.56	13.67	5.73	6.9	3.65	10.07	4.33	4.02	13.06	1.57
Merged-chr11-95840246-2	chr11	95840136	95840336	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-2059.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	5.65	5.28	9.13	2.41	4.91	9.09	5.31	6.62	11.01	9.54	6.03	7.83
Merged-chr7-26263927-1	chr7	26263827	26264027	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2904.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.81	0.5	3.99	1.61	7.36	5.02	12.95	8.5	3.93	5.02	7.54	2.82
Merged-chr14-47352482-1	chr14	47352382	47352582	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21378.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.81	4.53	3.42	1.61	7.36	3.76	1.0	5.86	11.21	7.53	4.52	1.88
Merged-chr5-71593956-1	chr5	71593856	71594056	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359050, intron 2 of 2)	intron (NM_001359050, intron 2 of 2)	-45751.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	2.42	3.27	7.99	5.23	9.0	5.96	2.66	8.3	2.36	6.53	14.07	8.77
Merged-chr8-4531896-2	chr8	4531796	4531996	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38491.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	6.06	2.52	6.28	4.83	4.09	7.53	10.96	16.51	13.57	11.05	11.05	5.95
Merged-chr6-99666157-3	chr6	99666083	99666283	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 1 of 6)	L2a|LINE|L2	588.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	9.29	7.29	9.13	10.05	3.68	4.08	3.99	10.79	9.64	3.51	2.51	8.46
Merged-chr11-89106035-1	chr11	89105935	89106135	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	32194.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	17.36	7.8	10.84	7.64	2.05	7.84	1.33	1.71	3.15	2.01	1.51	1.25
Merged-chr13-9130022-2	chr13	9129924	9130124	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	36143.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.04	3.27	19.4	7.24	11.05	10.03	14.62	19.23	10.62	11.05	9.04	5.95
Merged-chr14-32931386-1	chr14	32931286	32931486	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59996.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	4.44	7.8	1.14	3.22	9.82	10.35	0.66	2.33	5.7	4.02	3.01	1.25
Merged-chr11-98849294-1	chr11	98849194	98849394	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080925, exon 9 of 15)	exon (NM_001080925, exon 9 of 15)	12509.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	3.23	3.02	2.28	2.82	2.86	3.76	5.31	6.25	4.13	2.51	4.52	6.27
Merged-chr14-45325616-1	chr14	45325516	45325716	+	744.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4208.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0.4	4.28	1.14	4.83	8.59	5.02	4.32	1.43	5.11	11.05	17.08	5.33
Merged-chr12-16920322-1	chr12	16920222	16920422	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	URR1A|DNA|hAT-Charlie	25344.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.23	2.52	5.7	4.83	7.77	8.47	3.65	6.59	3.93	1.0	3.52	1.25
Merged-chr7-62463257-1	chr7	62463157	62463357	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013788, exon 1 of 1)	3' UTR (NM_013788, exon 1 of 1)	1253.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.81	0.75	0.0	0.0	3.27	4.39	6.98	5.58	1.57	1.51	0.0	0.63
Merged-chr5-8736591-1	chr5	8736491	8736691	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011076, intron 25 of 29)	intron (NM_011076, intron 25 of 29)	-61556.0	NM_011075	18669.0	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.81	0.75	1.14	1.61	8.18	5.02	5.65	8.52	0.98	0.0	3.52	3.13
Merged-chr1-184622055-2	chr1	184621963	184622163	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64372.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	2.83	6.04	5.7	0.8	11.86	4.08	6.98	11.92	7.08	11.05	13.06	5.33
Merged-chr2-167662517-1	chr2	167662417	167662617	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-973.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	1.21	3.52	9.13	4.02	9.41	5.02	1.0	4.6	3.15	5.02	4.52	2.51
Merged-chr17-84117921-1	chr17	84117821	84118021	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39261.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	2.42	2.52	5.7	2.82	4.09	6.9	2.99	7.82	8.06	6.03	6.53	3.45
Merged-chr18-53153357-2	chr18	53153253	53153453	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-22939.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	12.92	6.29	6.85	13.67	2.86	3.76	0.0	0.98	11.8	9.54	14.57	7.83
Merged-chr4-128756295-2	chr4	128756186	128756386	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2972.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	6.86	5.28	13.69	8.85	10.23	4.7	2.99	5.47	14.75	6.03	17.59	3.76
Merged-chr6-65043294-1	chr6	65043194	65043394	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	88.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	16.56	6.04	7.42	8.45	6.95	7.21	9.63	15.84	11.6	18.08	12.06	15.35
Merged-chr14-57730525-2	chr14	57730427	57730627	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	3891.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	3.23	6.29	13.12	4.83	4.5	8.15	7.64	9.45	10.03	10.04	14.07	5.01
Merged-chr17-85464160-1	chr17	85464060	85464260	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	154236.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.23	2.01	2.85	0.4	6.55	9.41	3.65	5.38	4.13	7.03	3.01	4.39
Merged-chr3-96402043-3	chr3	96401922	96402122	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12811.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	15.34	11.07	4.56	4.83	10.64	7.53	3.65	4.26	11.6	5.52	15.07	10.02
Merged-chr10-21037420-1	chr10	21037320	21037520	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358561, intron 17 of 22)	Lx8b|LINE|L1	-3400.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	7.27	3.27	2.28	5.23	11.45	3.76	1.99	7.63	5.31	2.51	5.53	2.82
Merged-chr9-49484318-1	chr9	49484218	49484418	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	1907.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	2.02	0.5	0.0	2.41	2.45	6.9	1.66	6.79	0.59	0.5	1.0	0.63
Merged-chr18-80410515-2	chr18	80410401	80410601	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-46247.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	7.67	10.06	7.42	5.23	7.77	6.27	3.99	14.94	6.49	6.03	5.53	6.89
Merged-chr1-60662717-3	chr1	60662575	60662775	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83713.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	8.88	4.02	7.42	2.01	13.91	9.09	22.26	9.62	7.47	4.02	5.53	3.76
Merged-chr10-77369316-1	chr10	77369216	77369416	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	48957.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.81	0.5	1.71	4.42	3.27	7.84	2.66	5.8	1.77	3.01	4.02	1.88
Merged-chr17-24206675-1	chr17	24206575	24206775	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010947, exon 6 of 6)	exon (NM_010947, exon 6 of 6)	-1113.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	11.71	3.52	2.28	4.02	5.32	6.9	2.33	6.56	4.72	10.54	2.51	9.4
Merged-chr11-61660998-3	chr11	61660867	61661067	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	7646.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	14.94	13.33	6.85	0.4	8.18	15.05	2.66	6.98	11.6	8.03	10.05	5.64
Merged-chr19-59208683-1	chr19	59208583	59208783	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10965.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	12.11	1.01	9.13	4.02	1.64	6.59	0.33	7.43	3.15	8.03	2.51	9.4
Merged-chr9-57558817-1	chr9	57558717	57558917	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2127.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	3.63	2.26	7.42	8.45	2.05	5.64	5.98	6.28	6.1	10.04	15.07	7.21
Merged-chr14-103234378-1	chr14	103234278	103234478	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207215, intron 26 of 84)	L2a|LINE|L2	112422.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	1.62	3.27	2.28	6.44	3.68	3.14	4.98	7.65	1.97	5.02	8.54	2.51
Merged-chr2-163420546-2	chr2	163420397	163420597	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151490)	TTS (NR_151490)	726.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	4.44	4.53	7.42	3.22	4.09	4.7	8.97	2.83	7.47	4.02	8.54	4.39
Merged-chr6-129626042-3	chr6	129625957	129626157	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2193.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	1.62	7.04	9.13	3.22	3.68	3.14	5.65	7.85	11.6	5.52	12.56	12.22
Merged-chr4-134478153-3	chr4	134478015	134478215	+	743.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102c|DNA|hAT-Charlie	9795.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	9.69	6.29	3.42	10.46	3.68	9.41	3.65	6.93	9.24	10.04	12.56	5.95
Merged-chr11-86739099-2	chr11	86739010	86739210	+	743.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	18457.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	14.94	7.55	5.7	6.03	11.86	11.6	8.97	7.01	14.55	7.53	8.04	6.58
Merged-chr2-148444968-2	chr2	148444870	148445070	+	743.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1435.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	9.69	8.05	6.28	21.32	10.23	1.57	8.3	9.81	7.08	4.52	4.02	8.77
Merged-chr14-40947887-3	chr14	40947772	40947972	+	743.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	337.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	13.33	9.31	14.26	7.64	8.18	9.41	8.64	12.76	13.57	5.02	9.04	4.39
Merged-chr14-70815865-3	chr14	70815753	70815953	+	743.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37080.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	12.11	6.54	10.27	12.07	10.64	7.84	8.64	14.38	7.87	4.52	17.59	8.77
Merged-chr12-55870147-2	chr12	55870051	55870251	+	743.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037756)	TTS (NM_001037756)	33785.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	2.83	0.75	0.0	9.25	8.59	10.98	6.31	9.5	4.13	5.52	13.06	7.21
Merged-chr16-45005521-2	chr16	45005423	45005623	+	743.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61845.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	8.48	3.27	5.7	10.86	12.27	6.59	5.98	17.78	10.23	2.51	3.52	2.51
Merged-chr5-104938686-2	chr5	104938573	104938773	+	743.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030239, intron 14 of 15)	intron (NM_030239, intron 14 of 15)	44044.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	9.29	9.06	12.55	6.84	6.95	4.08	6.64	11.1	0.79	0.0	0.5	0.0
Merged-chr10-118796100-2	chr10	118795980	118796180	+	743.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72823.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.25	5.03	6.28	2.82	1.64	11.92	6.64	9.45	5.7	7.53	13.06	6.27
Merged-chr6-43408998-3	chr6	43408888	43409088	+	743.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-33441.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	2.83	2.01	3.42	0.8	1.64	5.02	1.66	3.25	3.74	2.01	3.52	3.45
Merged-chr19-41656235-2	chr19	41656135	41656335	+	743.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015748, intron 4 of 36)	intron (NM_015748, intron 4 of 36)	67584.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	10.09	3.27	4.56	5.23	4.91	6.9	6.98	4.82	10.42	11.55	13.06	8.46
Merged-chr6-83444155-2	chr6	83444067	83444267	+	743.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	2412.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	4.44	7.29	10.27	8.45	9.41	11.92	4.32	9.53	9.05	3.51	6.03	4.39
Merged-chr14-65389894-3	chr14	65389786	65389986	+	743.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	31210.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	12.92	7.55	5.7	4.02	5.73	9.09	4.98	9.87	14.75	5.02	12.06	7.83
Merged-chr4-141536957-3	chr4	141536846	141537046	+	743.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	CpG	1651.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	6.46	6.79	2.28	5.63	6.95	17.87	14.62	4.15	7.47	9.54	7.54	7.52
Merged-chr11-94149234-1	chr11	94149134	94149334	+	743.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-62220.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.44	6.79	4.56	6.03	9.41	10.66	6.98	6.98	4.13	5.52	5.02	7.83
Merged-chr2-131179363-5	chr2	131179213	131179413	+	743.8076169999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	754.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	10.9	7.55	4.56	2.41	6.55	4.08	5.98	7.37	9.64	10.04	8.54	6.89
Merged-chr18-66477553-3	chr18	66477481	66477681	+	743.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18977.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	10.5	7.55	9.13	15.69	9.0	7.21	7.97	9.76	13.18	4.02	11.56	10.02
Merged-chr16-17249284-3	chr16	17249197	17249397	+	743.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	15710.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	9.69	3.27	5.13	10.46	8.59	5.96	6.31	8.8	11.01	6.03	13.06	10.34
Merged-chr12-32123717-3	chr12	32123621	32123821	+	743.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62442.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	5.65	6.79	7.99	17.7	10.64	9.72	11.63	15.22	15.34	6.53	18.09	6.89
Merged-chr14-75751236-2	chr14	75751126	75751326	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177381, intron 1 of 22)	intron (NM_177381, intron 1 of 22)	3267.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	6.46	4.28	1.71	8.85	1.23	8.15	4.32	6.76	15.74	12.05	15.07	8.46
Merged-chr13-90930060-2	chr13	90929979	90930179	+	743.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6957.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	10.09	4.28	6.85	10.86	10.64	2.2	5.31	10.37	5.51	5.02	10.05	6.27
Merged-chr19-5601913-3	chr19	5601834	5602034	+	743.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026616)	promoter-TSS (NM_026616)	61.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	8.88	9.06	13.69	7.64	7.36	6.59	6.31	6.62	5.11	15.06	16.58	8.46
Merged-chr8-127781211-2	chr8	127781118	127781318	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	481566.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.0	5.79	0.0	4.42	6.55	8.15	7.97	5.16	10.42	3.01	16.08	10.02
Merged-chr4-46917012-1	chr4	46916912	46917112	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081141, intron 1 of 18)	intron (NM_001081141, intron 1 of 18)	74702.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	2.02	3.02	10.84	8.85	6.14	6.59	10.3	9.73	1.38	1.51	4.02	6.89
Merged-chr8-60968729-3	chr8	60968642	60968842	+	743.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	Lx8|LINE|L1	-13943.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.65	8.05	6.28	5.63	7.36	15.99	14.28	15.9	14.16	9.54	19.09	6.58
Merged-chr3-103790202-1	chr3	103790102	103790302	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	1073.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	7.67	5.53	6.28	3.22	11.86	4.7	5.98	7.21	5.11	8.03	6.53	7.21
Merged-chr13-94159070-5	chr13	94158944	94159144	+	743.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101248.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.02	8.3	5.7	4.83	3.68	11.29	9.3	2.41	4.92	10.04	6.53	3.13
Merged-chr13-37969558-3	chr13	37969477	37969677	+	743.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24631.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	8.08	10.06	12.55	9.65	8.59	6.59	6.31	6.84	17.9	13.05	17.59	11.28
Merged-chr2-160209592-1	chr2	160209492	160209692	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117902.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.23	5.53	10.84	0.8	8.59	3.45	8.3	8.64	6.88	4.52	5.53	4.07
Merged-chr12-78923949-1	chr12	78923849	78924049	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17011.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	8.88	4.02	6.85	13.67	6.95	10.66	5.31	7.65	4.72	10.04	8.54	6.89
Merged-chr1-193888198-1	chr1	193888098	193888298	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	334561.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	2.02	6.79	5.7	2.41	6.14	8.47	17.61	5.8	2.95	5.02	9.55	2.19
Merged-chr4-40997782-3	chr4	40997686	40997886	+	743.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290448, intron 10 of 15)	intron (NM_001290448, intron 10 of 15)	4091.0	NR_037277	100526501.0		NR_037277	ENSMUSG00000092862	Mir3094	mir-3094|mmu-mir-3094	microRNA 3094	ncRNA	9.69	4.53	15.4	10.05	4.09	6.59	7.31	12.7	15.54	10.54	20.6	9.4
Merged-chr3-75280616-1	chr3	75280516	75280716	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10538.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	8.88	3.52	13.69	6.44	11.86	7.53	3.32	7.6	5.9	2.01	4.52	2.19
Merged-chr3-83899758-2	chr3	83899642	83899842	+	743.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58134.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.27	5.53	2.85	4.42	5.32	11.92	3.65	5.07	11.6	13.56	16.08	11.28
Merged-chr5-121917770-2	chr5	121917639	121917839	+	743.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	68742.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	7.27	9.31	9.7	8.45	9.0	8.47	5.31	3.93	3.74	2.01	6.03	7.21
Merged-chr19-14587441-2	chr19	14587342	14587542	+	743.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	9771.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.63	9.06	10.27	5.63	8.18	6.9	16.28	14.02	7.87	4.02	6.03	4.7
Merged-chr8-25196579-3	chr8	25196494	25196694	+	743.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	4948.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	3.23	8.3	7.42	13.67	6.14	9.72	4.98	7.79	8.46	7.03	12.06	5.95
Merged-chr5-96866559-2	chr5	96866478	96866678	+	743.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-54694.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	14.54	8.3	11.98	12.87	7.77	10.98	11.29	14.66	4.33	8.03	12.06	4.7
Merged-chr2-129675095-3	chr2	129675004	129675204	+	743.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23554.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	7.67	6.79	7.99	8.45	1.64	11.92	3.32	6.28	16.52	19.08	12.56	10.02
Merged-chr13-105316206-2	chr13	105316107	105316307	+	743.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21722.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	8.08	3.52	10.27	5.23	14.73	8.47	10.96	21.2	11.6	8.54	6.53	5.95
Merged-chr8-41041874-1	chr8	41041774	41041974	+	743.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005865)	promoter-TSS (NM_001005865)	57.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.25	1.26	6.85	2.01	4.5	5.96	3.65	10.91	17.9	15.06	11.05	7.83
Merged-chr7-53551625-2	chr7	53551517	53551717	+	743.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	340272.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	3.23	0.5	1.14	9.65	1.23	6.27	18.93	19.23	9.64	13.05	7.03	7.52
Merged-chr5-104005211-3	chr5	104005130	104005330	+	743.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053262, intron 4 of 6)	intron (NM_053262, intron 4 of 6)	16566.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	5.65	9.31	10.84	14.88	2.45	12.86	3.65	9.87	16.52	10.54	15.58	15.66
Merged-chr3-95517654-3	chr3	95517553	95517753	+	743.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-9133.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	10.9	9.06	11.41	8.45	5.73	5.96	6.31	9.45	12.19	21.59	15.58	7.21
Merged-chr2-168117349-3	chr2	168117273	168117473	+	743.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	36369.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	13.33	10.06	3.42	11.66	7.77	10.66	2.33	4.82	10.42	8.03	11.56	8.14
Merged-chr9-25175385-3	chr9	25175274	25175474	+	743.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23593.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	8.88	2.01	10.84	14.48	13.5	8.47	6.98	12.2	14.95	12.05	15.07	6.89
Merged-chr2-92563089-1	chr2	92562989	92563189	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29117.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	6.06	5.53	1.14	4.83	3.27	7.21	4.98	8.89	3.34	1.51	8.04	4.39
Merged-chr11-115579185-2	chr11	115579074	115579274	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002929, intron 11 of 18)	intron (NM_001002929, intron 11 of 18)	14730.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	11.31	11.07	5.7	13.67	2.86	6.59	0.66	3.45	11.01	5.02	14.57	9.71
Merged-chr1-38049809-1	chr1	38049709	38049909	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198303, intron 21 of 23)	intron (NM_198303, intron 21 of 23)	51799.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.06	1.26	6.85	1.61	5.73	6.9	5.98	6.98	5.7	2.51	5.02	6.27
Merged-chr15-73629584-2	chr15	73629444	73629644	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4800.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	10.9	3.77	4.56	6.44	6.14	3.76	15.94	5.86	7.47	2.51	7.54	3.45
Merged-chr19-29496975-2	chr19	29496919	29497119	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	24968.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.85	2.01	1.14	4.83	4.09	4.39	3.65	7.65	1.97	3.51	2.51	6.27
Merged-chr6-56608446-2	chr6	56608348	56608548	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96251.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.46	3.27	3.99	8.04	3.68	10.98	7.64	14.47	12.39	4.52	6.03	1.88
Merged-chrX-170677447-1	chrX	170677347	170677547	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308488, intron 7 of 7)	CpG-16011	4803.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	4.85	4.53	6.85	3.22	1.23	4.39	6.98	2.58	1.38	4.02	1.51	1.88
Merged-chr17-46783099-3	chr17	46782970	46783170	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-414.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	8.08	5.53	9.13	10.86	6.95	9.41	3.99	6.31	12.59	6.03	2.01	10.96
Merged-chr5-65096238-2	chr5	65096140	65096340	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-11328.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	10.5	7.55	9.13	3.22	3.68	1.88	4.32	10.54	21.64	12.55	16.58	17.54
Merged-chr11-20743569-2	chr11	20743464	20743664	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2008.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	11.31	11.57	3.42	1.61	8.18	13.17	4.32	4.43	19.08	9.54	2.01	3.45
Merged-chr9-44087902-3	chr9	44087802	44088002	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	2982.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	10.5	16.1	5.13	10.86	10.23	22.89	18.27	20.94	9.83	6.53	16.58	4.7
Merged-chr8-83858116-2	chr8	83858034	83858234	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-41964.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	4.44	11.32	15.4	13.67	0.0	1.88	0.33	2.47	9.05	9.54	14.57	10.65
Merged-chr15-63924640-2	chr15	63924527	63924727	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029414, intron 10 of 10)	intron (NR_029414, intron 10 of 10)	10166.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	4.44	3.52	10.27	8.04	6.14	5.33	8.64	7.6	9.24	2.51	13.57	5.64
Merged-chr13-51100059-1	chr13	51099959	51100159	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001283030)	promoter-TSS (NM_001283030)	668.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	4.85	7.04	6.28	0.8	4.09	8.47	4.98	6.11	4.52	5.52	8.04	7.52
Merged-chr7-122470620-1	chr7	122470520	122470720	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	MER5A1|DNA|hAT-Charlie	181495.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.04	1.26	0.57	2.41	6.95	5.02	2.66	6.9	9.24	4.52	4.02	3.13
Merged-chr4-53151148-2	chr4	53151048	53151248	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	8747.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.44	6.29	11.98	14.08	5.32	10.35	6.64	6.56	9.24	4.52	13.06	1.25
Merged-chr3-8957851-3	chr3	8957737	8957937	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	6309.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	9.69	8.55	0.0	1.61	9.41	7.21	8.97	9.93	11.8	15.06	9.04	5.01
Merged-chr2-145370487-1	chr2	145370387	145370587	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	ORR1C2|LTR|ERVL-MaLR	127876.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.4	3.02	5.7	3.62	5.32	5.96	3.99	9.03	5.51	1.51	5.53	3.13
Merged-chrX-101427946-2	chrX	101427864	101428064	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1687.0	NM_023144	53610.0	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	9.29	7.29	3.99	2.41	9.82	2.51	1.66	3.56	13.18	14.06	8.54	5.01
Merged-chr10-69352355-2	chr10	69352252	69352452	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007659, intron 1 of 7)	intron (NM_007659, intron 1 of 7)	560.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	3.23	12.07	6.85	8.85	5.73	3.14	13.95	7.29	9.44	8.54	12.06	6.58
Merged-chr16-49971969-2	chr16	49971876	49972076	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8484.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	7.27	2.52	1.14	2.41	7.36	14.74	6.98	8.64	13.37	9.04	10.05	5.95
Merged-chr10-93356295-1	chr10	93356195	93356395	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20084.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	2.83	8.3	6.28	4.42	8.59	2.2	6.98	6.45	2.95	4.02	1.0	1.57
Merged-chr12-101075204-3	chr12	101075085	101075285	+	743.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160214, intron 1 of 14)	intron (NM_001160214, intron 1 of 14)	-7266.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	2.02	3.52	9.7	6.44	1.64	7.84	2.99	3.17	6.1	9.54	8.04	4.7
Merged-chr1-136629553-2	chr1	136629470	136629670	+	743.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177643, exon 2 of 2)	3' UTR (NM_177643, exon 2 of 2)	4669.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	1.21	1.26	4.56	2.82	11.86	4.39	5.31	7.26	10.42	11.05	15.58	8.77
Merged-chr3-144453827-3	chr3	144453730	144453930	+	743.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355234, intron 3 of 6)	intron (NM_001355234, intron 3 of 6)	116386.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	18.57	4.53	1.71	7.24	13.91	10.66	5.31	12.81	15.34	11.55	18.59	10.65
Merged-chr5-100616895-3	chr5	100616803	100617003	+	743.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44698.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	12.11	14.09	9.13	8.04	11.86	15.05	2.66	6.39	13.57	11.05	12.56	10.96
Merged-chr11-107131305-5	chr11	107131277	107131477	+	743.4400019999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176850, exon 1 of 28)	exon (NM_176850, exon 1 of 28)	545.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	7.27	2.01	4.56	2.01	5.73	8.15	8.97	5.89	8.06	3.01	2.51	8.46
Merged-chr10-7924412-3	chr10	7924309	7924509	+	743.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	28656.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	7.27	9.06	10.27	10.86	15.96	10.03	7.31	12.67	14.16	18.58	13.57	8.77
Merged-chr12-112670871-3	chr12	112670767	112670967	+	743.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3409.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	16.96	10.06	18.83	11.26	9.41	12.86	4.32	11.05	7.87	5.52	16.58	6.89
Merged-chr5-5301184-2	chr5	5301087	5301287	+	743.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-35119.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.06	6.04	6.28	9.25	9.0	9.09	11.63	15.64	9.83	8.54	13.57	7.83
Merged-chr11-109413263-2	chr11	109413156	109413356	+	743.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-12690.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	1.62	2.01	1.14	1.21	8.18	23.2	10.96	4.82	19.08	22.59	8.04	6.89
Merged-chr7-111226466-2	chr7	111226369	111226569	+	743.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103794.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	10.09	5.03	8.56	5.23	11.05	12.54	11.96	12.98	11.21	9.54	8.54	4.39
Merged-chr16-33191033-2	chr16	33190864	33191064	+	743.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	5893.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	7.27	3.27	1.71	3.22	2.86	0.63	8.3	3.25	1.77	5.52	8.04	2.82
Merged-chr14-65902999-2	chr14	65902898	65903098	+	743.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50746.0	NM_172604	219151.0	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	8.88	15.59	10.84	6.03	1.23	4.39	4.65	2.52	11.8	21.09	14.07	10.02
Merged-chr7-30508252-3	chr7	30508137	30508337	+	743.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019546, intron 7 of 9)	intron (NM_019546, intron 7 of 9)	-6885.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	3.23	4.78	10.27	9.25	4.5	5.33	2.99	7.71	24.19	22.59	35.68	22.87
Merged-chr15-64181427-3	chr15	64181322	64181522	+	743.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-120974.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.23	7.55	9.7	8.04	4.91	3.76	6.98	12.48	8.06	9.04	12.06	7.52
Merged-chr9-13681812-1	chr9	13681712	13681912	+	743.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	19352.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.04	3.52	3.42	7.24	12.27	8.15	1.99	6.39	3.74	2.51	6.03	6.27
Merged-chr9-44086049-1	chr9	44085949	44086149	+	743.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	1129.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	5.25	5.79	9.13	3.22	9.0	10.66	3.99	5.24	5.11	5.02	3.52	2.51
Merged-chr14-47504725-1	chr14	47504625	47504825	+	743.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146085, intron 2 of 3)	intron (NM_001146085, intron 2 of 3)	32164.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	6.46	6.29	7.99	4.83	0.41	2.82	1.33	3.59	10.03	7.03	14.57	7.52
Merged-chr6-57513869-3	chr6	57513770	57513970	+	743.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 6 of 6)	intron (NM_175523, intron 6 of 6)	21556.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	10.5	11.07	3.99	6.03	8.18	9.41	8.97	3.5	13.77	12.55	7.54	1.25
Merged-chr2-50631965-3	chr2	50631842	50632042	+	743.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3c|LINE|L1	276917.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	4.04	3.77	19.97	6.84	6.55	4.7	8.3	17.86	11.01	15.06	15.07	5.95
Merged-chr8-83653556-3	chr8	83653477	83653677	+	743.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	899.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	6.06	6.54	10.84	8.85	10.64	9.09	7.31	16.32	9.44	17.57	13.57	13.16
Merged-chr16-91524252-2	chr16	91524158	91524358	+	743.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	3286.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	5.25	5.03	2.85	9.65	7.77	14.42	13.29	6.53	9.24	8.54	4.52	1.57
Merged-chr2-51387356-2	chr2	51387262	51387462	+	743.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50538.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	0.25	0.57	4.02	17.59	9.72	15.61	29.33	7.87	11.05	18.59	2.51
Merged-chr11-86894389-3	chr11	86894278	86894478	+	743.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86718.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	11.71	7.55	13.12	3.22	10.64	10.03	3.32	6.08	11.41	14.56	12.06	6.89
Merged-chr18-4280040-3	chr18	4279929	4280129	+	743.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	72924.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	12.52	17.86	10.84	4.83	14.73	9.72	3.99	6.39	15.14	13.05	11.05	10.65
Merged-chr13-18779804-3	chr13	18779718	18779918	+	743.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 4 of 28)	MTC|LTR|ERVL-MaLR	62526.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	8.08	6.54	10.27	10.05	11.45	6.9	11.29	16.96	13.18	4.02	17.08	7.21
Merged-chr11-20469455-3	chr11	20469373	20469573	+	743.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73780.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	10.09	9.56	9.13	4.42	13.5	8.47	2.99	7.37	12.39	14.06	15.07	7.21
Merged-chr1-134801988-3	chr1	134801905	134802105	+	743.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	1716.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	12.92	11.07	12.55	7.64	12.27	8.15	4.65	12.08	8.65	6.03	9.04	5.64
Merged-chr9-58954640-2	chr9	58954540	58954740	+	743.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008684, intron 7 of 28)	LTR41|LTR|ERVL	81801.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	10.09	7.55	19.4	11.66	10.23	8.78	8.97	14.86	5.11	0.5	5.02	10.02
Merged-chr5-102778053-1	chr5	102777953	102778153	+	743.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	9243.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	2.42	2.77	0.0	3.22	6.14	6.59	8.64	10.82	8.85	5.02	5.53	5.95
Merged-chr8-106887964-3	chr8	106887867	106888067	+	743.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	5626.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	8.08	8.3	11.41	12.47	12.27	11.29	7.31	13.07	14.55	12.55	23.62	10.02
Merged-chr15-100187046-2	chr15	100186930	100187130	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172819, intron 18 of 32)	intron (NM_172819, intron 18 of 32)	1006.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	5.25	4.78	2.28	7.64	5.32	4.7	7.97	6.64	10.42	5.02	9.55	10.65
Merged-chr5-45474387-2	chr5	45474306	45474506	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18968.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	5.65	6.29	6.85	7.24	10.64	9.09	3.32	10.37	9.83	10.04	14.07	4.39
Merged-chr9-50834262-2	chr9	50834119	50834319	+	743.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-22705.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	2.02	7.29	7.99	5.23	2.45	5.96	7.97	8.47	3.54	4.02	6.53	6.89
Merged-chr3-127914344-2	chr3	127914279	127914479	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1792.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	4.04	2.01	5.13	1.21	2.86	5.64	3.32	7.71	3.74	7.03	9.04	0.94
Merged-chr11-63952268-2	chr11	63952190	63952390	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11936.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	2.42	2.77	3.42	2.41	10.64	5.96	7.31	5.36	6.88	4.52	13.57	10.02
Merged-chr2-180578902-2	chr2	180578806	180579006	+	743.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2316.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	9.69	3.27	6.28	6.44	6.14	5.64	6.64	8.07	10.62	12.55	22.61	6.58
Merged-chr7-73594626-2	chr7	73594509	73594709	+	743.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36214.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	6.86	5.53	0.57	2.82	6.55	7.84	5.65	7.71	13.37	9.04	10.55	9.4
Merged-chr16-33683907-3	chr16	33683834	33684034	+	743.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-532.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	13.73	6.29	6.85	12.07	3.27	5.64	5.31	11.66	10.62	18.58	5.53	6.27
Merged-chr2-31460372-3	chr2	31460193	31460393	+	743.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9977.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	6.46	16.85	18.25	8.04	3.68	3.45	3.99	2.27	3.34	5.52	5.53	7.21
Merged-chr5-104946816-3	chr5	104946699	104946899	+	743.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 13 of 15)	Lx8b|LINE|L1	35918.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	10.9	7.29	15.4	10.86	8.18	9.09	4.32	4.93	20.85	26.61	12.06	5.01
Merged-chr17-78455323-3	chr17	78455213	78455413	+	743.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37161.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	7.67	9.06	11.98	5.23	12.27	4.7	4.98	13.18	9.64	17.57	12.06	6.58
Merged-chr1-55613103-2	chr1	55613001	55613201	+	743.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	207155.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.65	2.77	6.85	16.89	7.36	4.7	10.63	13.91	11.01	8.03	9.55	4.7
Merged-chr3-7535331-2	chr3	7535212	7535412	+	743.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173181, intron 7 of 8)	intron (NM_173181, intron 7 of 8)	31886.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	8.88	4.53	1.14	4.83	7.36	7.53	7.31	15.42	13.37	8.03	11.05	4.39
Merged-chr8-128602206-3	chr8	128602134	128602334	+	743.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83420.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	7.67	6.79	8.56	13.27	10.64	13.48	9.3	16.54	13.77	11.05	12.56	5.64
Merged-chr17-70970360-2	chr17	70970274	70970474	+	743.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	20142.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.65	5.79	13.69	5.63	3.27	8.78	6.64	6.45	13.96	11.05	23.62	9.08
Merged-chr8-25083325-3	chr8	25083225	25083425	+	743.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	18486.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	12.11	7.8	12.55	6.44	11.05	4.39	6.98	10.09	10.82	9.54	15.07	5.64
Merged-chr7-80191673-3	chr7	80191583	80191783	+	743.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	4842.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	10.9	6.54	5.13	6.44	9.82	10.35	15.61	15.28	11.41	13.56	11.05	10.65
Merged-chr19-29430701-3	chr19	29430550	29430750	+	743.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	19731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.63	6.29	7.99	8.85	14.73	9.72	9.63	10.46	10.23	7.53	6.53	7.21
Merged-chr13-93095761-1	chr13	93095661	93095861	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_023821, exon 2 of 13)	exon (NM_023821, exon 2 of 13)	928.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	6.86	11.07	10.84	2.41	5.32	9.41	6.64	2.69	4.92	5.02	7.03	3.76
Merged-chr5-102640021-1	chr5	102639921	102640121	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128789.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.23	1.01	1.14	3.62	4.09	5.02	5.65	6.56	5.31	8.03	6.03	2.82
Merged-chr15-58986633-1	chr15	58986533	58986733	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52823.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	1.62	3.52	0.0	6.44	7.77	6.59	3.32	11.92	3.15	8.03	8.54	3.13
Merged-chr2-150872843-1	chr2	150872743	150872943	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-30273.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	2.01	0.0	0.8	5.32	2.82	1.33	8.44	4.33	0.5	2.51	1.88
Merged-chr10-99171543-1	chr10	99171443	99171643	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	63408.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.85	3.02	1.14	7.24	7.77	3.14	6.31	5.55	4.13	7.53	6.03	1.25
Merged-chr14-77526536-1	chr14	77526436	77526636	+	743.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	Lx6|LINE|L1	-19668.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	1.62	1.01	6.28	3.62	3.68	4.08	2.99	2.69	10.03	6.03	12.06	13.78
Merged-chrX-85773281-1	chrX	85773181	85773381	+	743.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 1 of 19)	intron (NM_212444, intron 1 of 19)	3538.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.4	3.52	2.85	3.22	4.5	2.82	4.32	3.22	10.03	13.05	7.54	2.51
Merged-chr11-20176249-1	chr11	20176149	20176349	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25163.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	2.42	3.27	1.14	3.22	6.55	6.59	3.32	6.17	7.87	9.04	13.57	4.07
Merged-chr4-70601516-1	chr4	70601416	70601616	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66588.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	7.27	2.26	2.28	4.83	7.36	8.15	4.65	8.97	5.11	3.01	10.05	5.01
Merged-chr18-64972361-2	chr18	64972254	64972454	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	L1MA5|LINE|L1	-51173.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	9.69	9.56	11.41	0.8	4.09	7.53	4.98	13.82	5.51	7.03	7.54	5.95
Merged-chr13-41804091-1	chr13	41803991	41804191	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	43397.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	3.23	5.03	6.85	4.02	4.5	9.72	2.66	6.11	4.13	7.03	7.03	2.51
Merged-chr4-95160262-1	chr4	95160162	95160362	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108040.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.63	4.02	3.42	3.22	8.18	3.14	6.98	7.91	7.47	2.01	6.03	6.27
Merged-chr11-108040999-2	chr11	108040910	108041110	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	44162.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	9.29	2.52	11.41	5.23	7.77	2.82	1.33	9.76	7.08	7.03	13.06	1.88
Merged-chr9-104724548-1	chr9	104724448	104724648	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	155065.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.0	1.01	1.14	2.01	6.55	1.88	6.64	7.15	0.0	0.0	0.0	0.0
Merged-chr5-142441785-1	chr5	142441685	142441885	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	Tigger7|DNA|TcMar-Tigger	-22146.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.81	2.52	3.42	3.62	3.68	9.41	3.99	4.43	3.93	2.51	0.0	3.76
Merged-chr12-35532946-1	chr12	35532846	35533046	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2043.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.81	2.52	2.28	0.0	0.0	0.31	4.65	2.33	0.98	1.51	2.51	2.82
Merged-chr11-3931684-1	chr11	3931584	3931784	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130458, intron 1 of 9)	intron (NM_001130458, intron 1 of 9)	277.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	2.42	6.04	5.13	4.83	9.0	4.39	8.64	8.92	7.67	5.52	11.56	5.95
Merged-chr4-97564881-1	chr4	97564781	97564981	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17062.0	NM_001122952	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.46	2.77	8.56	4.83	5.73	3.14	3.99	7.21	5.7	4.52	3.01	4.07
Merged-chr15-36578092-1	chr15	36577992	36578192	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-22519.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	6.06	5.28	3.99	1.21	6.55	7.53	5.65	9.25	2.36	6.53	5.02	0.31
Merged-chr3-84868234-3	chr3	84868131	84868331	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	4086.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.27	12.32	25.1	19.71	9.0	4.7	13.62	10.09	9.05	5.02	13.06	3.76
Merged-chr11-118211069-2	chr11	118211026	118211226	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1616.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.08	2.26	8.56	3.62	9.0	10.35	25.24	23.64	6.49	2.01	6.03	5.33
Merged-chrX-162827552-1	chrX	162827452	162827652	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290777, intron 1 of 5)	intron (NM_001290777, intron 1 of 5)	1902.0	NM_001290776	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	5.65	9.31	5.7	3.22	0.82	7.53	3.32	6.79	3.15	4.02	4.52	5.64
Merged-chr11-79891322-1	chr11	79891222	79891422	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71065.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.81	2.26	6.28	4.02	8.18	5.33	9.3	12.64	2.75	2.01	3.01	5.33
Merged-chr7-130770951-1	chr7	130770851	130771051	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3118.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	3.63	4.02	9.7	4.83	2.86	11.92	5.65	5.75	5.7	3.01	7.03	4.7
Merged-chr18-4944640-2	chr18	4944541	4944741	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101948.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	10.9	6.79	9.13	10.05	6.55	6.9	14.95	13.63	5.9	0.0	22.11	7.21
Merged-chr6-116016526-1	chr6	116016426	116016626	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-21521.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	2.42	3.02	8.56	2.82	6.55	6.9	11.63	5.5	3.74	5.52	7.03	6.27
Merged-chr9-120817096-2	chr9	120817008	120817208	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98142.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	7.27	6.29	4.56	5.23	4.91	18.19	6.98	8.97	0.0	0.0	4.02	0.0
Merged-chr13-37749754-1	chr13	37749654	37749854	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76284.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.06	7.04	5.13	4.83	10.64	2.82	1.66	6.31	6.49	0.5	3.01	2.51
Merged-chr10-21192634-1	chr10	21192534	21192734	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	5690.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	13.33	3.77	10.27	7.24	7.36	11.29	7.31	6.84	2.16	7.03	6.53	3.13
Merged-chr4-153873674-1	chr4	153873574	153873774	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76802.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	1.51	0.0	0.8	4.91	6.27	5.98	7.07	1.38	1.0	2.51	2.51
Merged-chr4-11387368-1	chr4	11387268	11387468	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290383)	promoter-TSS (NM_001290383)	-585.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	4.44	5.79	1.71	4.83	3.27	5.64	5.98	6.7	2.36	7.03	2.51	8.46
Merged-chr14-70572571-2	chr14	70572454	70572654	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-5270.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	8.08	2.01	9.13	4.02	6.14	12.86	10.3	12.81	1.38	0.0	1.51	0.63
Merged-chr10-79961412-1	chr10	79961312	79961512	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	1260.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	1.62	0.25	2.28	3.62	1.64	4.39	6.98	7.09	2.56	2.01	2.01	4.07
Merged-chr10-68446049-2	chr10	68445946	68446146	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95829.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	7.27	9.81	15.97	12.07	7.36	15.68	10.96	17.69	7.87	12.55	18.09	5.01
Merged-chr10-59881081-1	chr10	59880981	59881181	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	1490.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	10.9	9.31	2.85	4.83	5.73	2.51	1.33	2.66	8.26	6.03	1.0	1.57
Merged-chr7-86881134-1	chr7	86881034	86881234	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-34215.0	NM_001105189	637896.0	Mm.389957	NM_001105189	ENSMUSG00000091962	Vmn2r78	-	vomeronasal 2, receptor 78	protein-coding	0.81	4.28	1.71	5.23	6.55	2.51	3.65	7.63	5.7	2.01	8.54	2.19
Merged-chr5-139060627-1	chr5	139060527	139060727	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359099, intron 6 of 10)	intron (NM_001359099, intron 6 of 10)	-65674.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	2.52	1.14	1.61	4.5	9.72	3.65	7.96	4.33	1.51	4.52	2.82
Merged-chr4-126303580-1	chr4	126303480	126303680	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_199473, intron 2 of 3)	B1_Mus1|SINE|Alu	16786.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	9.29	4.02	7.99	3.62	0.0	0.0	0.0	0.31	0.39	3.51	1.51	0.63
Merged-chr13-83730809-1	chr13	83730709	83730909	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152244, intron 2 of 4)	CpG	-1684.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	1.62	7.55	2.85	6.84	5.73	4.7	2.66	3.11	0.79	2.51	4.02	3.45
Merged-chr7-114311330-1	chr7	114311230	114311430	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35214.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.04	2.52	3.42	7.24	5.32	0.63	4.65	7.71	3.74	0.0	1.0	0.0
Merged-chr18-3329073-1	chr18	3328973	3329173	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110851, intron 1 of 4)	B2_Mm1t|SINE|B2	-1482.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	5.65	2.77	11.98	1.61	2.45	11.6	7.31	3.08	4.52	8.54	12.06	4.7
Merged-chrX-152233338-3	chrX	152233241	152233441	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013668, exon 1 of 26)	5' UTR (NM_013668, exon 1 of 26)	114.0	NM_013668	20591.0	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	5.65	7.55	10.27	5.63	11.45	7.21	23.25	6.64	15.93	12.05	11.56	13.78
Merged-chr18-5142001-1	chr18	5141901	5142101	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	23730.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	2.02	3.02	6.85	2.82	6.55	11.29	6.31	6.06	4.13	7.53	5.53	5.64
Merged-chr11-3330675-3	chr11	3330608	3330808	+	742.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178149)	promoter-TSS (NM_178149)	-23.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	9.69	7.55	9.13	10.46	6.95	4.39	5.98	11.83	12.0	21.59	8.54	9.08
Merged-chr17-73882364-2	chr17	73882255	73882455	+	742.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67841.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.63	3.77	2.85	7.24	7.77	11.29	4.65	9.67	10.42	15.06	10.55	11.28
Merged-chr16-4757671-3	chr16	4757564	4757764	+	742.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	718.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.86	6.04	12.55	9.65	15.55	8.47	9.3	14.61	16.92	2.51	19.09	8.14
Merged-chr16-18617839-3	chr16	18617756	18617956	+	742.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4547.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	4.44	8.55	9.13	2.82	11.05	14.42	5.98	9.03	10.82	10.54	9.04	9.4
Merged-chr19-12575589-3	chr19	12575403	12575603	+	742.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026640, intron 1 of 3)	B1_Mm|SINE|Alu	1978.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	2.83	6.29	3.42	2.82	2.86	7.21	1.66	0.39	0.98	4.02	6.53	8.46
Merged-chr6-47911818-3	chr6	47911705	47911905	+	742.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR85c|LTR|Gypsy?	-8763.0	NM_145576	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	12.92	7.55	14.83	13.27	3.27	8.78	4.32	8.89	9.64	11.55	12.06	9.71
Merged-chr19-53900194-3	chr19	53900085	53900285	+	742.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-3166.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	14.13	7.55	5.7	2.41	10.64	10.03	5.31	11.19	10.03	12.05	16.08	5.64
Merged-chr17-87097986-2	chr17	87097827	87098027	+	742.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9752.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	10.09	5.28	10.84	6.84	4.09	7.84	5.31	6.98	2.75	1.51	3.52	1.57
Merged-chr6-134036974-2	chr6	134036880	134037080	+	742.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	1280.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.08	3.02	10.84	5.23	3.68	8.15	5.65	6.06	12.39	6.53	15.07	10.65
Merged-chr9-104281924-3	chr9	104281813	104282013	+	742.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18983.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.86	6.29	9.13	8.45	15.96	12.23	11.63	10.82	12.78	10.54	13.57	10.02
Merged-chr7-80584222-2	chr7	80584109	80584309	+	742.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49090.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	8.08	4.02	5.7	4.83	5.32	10.66	6.31	6.36	10.03	12.05	10.55	5.33
Merged-chr19-25036987-1	chr19	25036887	25037087	+	742.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	37458.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.23	3.27	3.42	0.0	0.0	0.63	0.66	2.5	12.98	10.54	13.06	9.71
Merged-chr3-32409132-1	chr3	32409032	32409232	+	742.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-27019.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	4.85	2.77	4.56	6.44	9.82	15.37	9.3	6.25	5.9	11.05	5.02	5.64
Merged-chr7-115001331-3	chr7	115001216	115001416	+	742.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50042.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	9.29	5.28	7.99	14.08	11.86	7.53	17.61	14.89	5.51	9.54	11.05	10.02
Merged-chr9-124013465-3	chr9	124013361	124013561	+	742.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8510.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	7.67	10.31	15.97	10.05	13.91	13.17	7.31	19.74	12.0	5.52	13.06	5.95
Merged-chr18-84646288-3	chr18	84646186	84646386	+	742.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177450, intron 1 of 11)	intron (NM_177450, intron 1 of 11)	3809.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	11.31	7.8	3.42	12.07	11.45	7.84	2.66	10.37	9.05	9.54	25.12	8.46
Merged-chr4-88315211-3	chr4	88315174	88315374	+	742.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 21 of 43)	(TCCC)n|Simple_repeat|Simple_repeat	123652.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.44	11.57	5.13	8.85	9.0	7.84	7.97	5.83	14.95	7.53	8.54	6.58
Merged-chr5-33039619-3	chr5	33039497	33039697	+	742.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20781.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.63	7.8	13.69	8.04	12.68	12.23	2.99	6.25	14.16	8.03	8.54	6.89
Merged-chr1-165658794-2	chr1	165658698	165658898	+	742.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 3 of 5)	intron (NM_001038846, intron 3 of 5)	-24257.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.85	4.02	0.0	3.22	7.36	4.39	6.31	7.54	14.75	4.02	10.05	9.08
Merged-chr2-5393149-2	chr2	5393048	5393248	+	742.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13758.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	6.06	6.79	4.56	8.45	5.73	10.98	3.32	6.59	8.06	14.06	5.53	3.13
Merged-chr3-88292176-2	chr3	88292079	88292279	+	742.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357024, intron 2 of 3)	B2_Mm2|SINE|B2	4659.0	NM_029801	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.0	4.02	6.85	8.04	9.82	10.66	3.65	3.34	16.72	13.56	18.59	9.4
Merged-chr5-77172662-2	chr5	77172569	77172769	+	742.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38536.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	8.88	11.57	8.56	10.05	2.86	2.51	1.0	2.05	15.74	9.54	12.06	14.41
Merged-chr11-19972601-3	chr11	19972520	19972720	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	48178.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	27.86	15.09	13.69	3.62	9.0	24.46	6.64	5.52	12.19	10.54	17.08	5.01
Merged-chr13-20099708-3	chr13	20099590	20099790	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	9183.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.88	10.82	15.97	10.05	10.23	6.27	11.96	16.18	10.42	6.53	18.09	6.89
Merged-chr17-47194822-3	chr17	47194725	47194925	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-35405.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	7.27	6.79	9.13	11.66	13.91	14.11	6.31	7.15	15.74	17.07	13.57	10.34
Merged-chr13-21792173-3	chr13	21792109	21792309	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	4721.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	6.46	7.55	7.42	13.27	11.05	7.53	9.3	6.48	9.64	12.05	16.58	8.77
Merged-chr7-80186985-3	chr7	80186883	80187083	+	742.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013659, exon 1 of 15)	5' UTR (NM_013659, exon 1 of 15)	142.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	7.67	11.32	10.27	9.25	9.41	7.21	9.3	6.11	7.47	14.56	7.54	9.71
Merged-chr8-126779607-1	chr8	126779507	126779707	+	742.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69413.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.4	0.75	5.13	2.01	0.0	0.94	1.33	0.9	14.16	11.05	11.05	6.58
Merged-chr2-158207958-1	chr2	158207858	158208058	+	742.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001131021, intron 8 of 15)	intron (NM_001131021, intron 8 of 15)	15950.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	2.83	5.03	6.28	4.83	4.5	9.09	8.64	4.77	3.34	7.53	4.02	3.45
Merged-chr11-116017282-1	chr11	116017182	116017382	+	742.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4563.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	9.29	10.56	10.27	12.07	7.77	21.01	4.65	1.35	9.44	1.0	2.51	2.82
Merged-chr10-82083262-3	chr10	82083188	82083388	+	742.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35161.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	5.65	6.04	9.7	8.85	2.86	8.78	6.31	7.57	22.03	13.05	23.62	10.34
Merged-chr2-127337532-3	chr2	127337385	127337585	+	742.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010090, intron 3 of 3)	intron (NM_010090, intron 3 of 3)	-1154.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	2.83	6.54	5.13	0.4	4.5	10.35	3.32	3.2	7.67	8.54	4.52	3.76
Merged-chr16-22300161-2	chr16	22300075	22300275	+	742.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5187.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	6.46	2.01	11.98	2.82	9.82	5.02	4.98	11.02	6.1	4.52	14.07	8.46
Merged-chr4-115643257-2	chr4	115643236	115643436	+	742.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007823, intron 1 of 11)	intron (NM_007823, intron 1 of 11)	4369.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	2.83	3.52	1.14	2.01	4.91	3.45	5.98	5.5	2.75	3.51	13.06	5.64
Merged-chr7-143284017-4	chr7	143283974	143284174	+	742.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	12473.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	2.42	5.03	6.28	4.83	2.86	4.39	0.66	3.08	7.28	4.52	3.01	8.46
Merged-chr4-19681735-2	chr4	19681595	19681795	+	742.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	27309.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	2.42	1.26	0.0	4.83	4.5	7.21	10.63	10.71	8.26	4.02	2.51	5.33
Merged-chr3-53436653-1	chr3	53436553	53436753	+	742.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	26605.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	1.01	0.0	4.02	6.95	5.96	9.97	5.38	1.18	1.0	0.5	0.63
Merged-chr7-101386053-3	chr7	101386019	101386219	+	742.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 5 of 33)	intron (NM_001040111, intron 5 of 33)	593.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	10.9	8.8	5.7	3.22	11.45	19.44	17.94	12.7	9.24	5.52	10.05	8.14
Merged-chr18-39265274-3	chr18	39265167	39265367	+	742.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	221978.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.67	6.04	17.11	14.88	7.36	10.66	12.95	10.51	6.88	6.03	12.56	5.33
Merged-chr14-75066088-3	chr14	75065987	75066187	+	742.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	50060.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	8.88	6.54	10.84	9.65	13.91	9.41	9.63	13.15	18.29	10.54	12.56	13.47
Merged-chr10-25381317-3	chr10	25381219	25381419	+	742.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	21521.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	9.69	9.56	23.96	9.65	13.91	15.68	9.97	16.79	13.57	20.59	15.07	7.83
Merged-chr17-56273361-1	chr17	56273261	56273461	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	3406.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	5.25	2.52	8.56	4.42	5.73	3.14	2.66	9.9	4.92	3.01	7.03	5.95
Merged-chr6-82835804-1	chr6	82835704	82835904	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	46049.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	4.04	4.53	3.42	8.85	8.18	13.17	6.64	7.57	7.28	6.03	20.1	6.27
Merged-chr8-26239876-2	chr8	26239764	26239964	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81695.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	1.62	3.02	3.42	9.65	5.73	8.47	7.97	13.54	3.74	7.03	12.56	6.27
Merged-chr10-80173743-2	chr10	80173636	80173836	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152857)	TTS (NR_152857)	792.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	13.33	3.27	10.27	0.0	10.64	9.72	4.65	8.72	16.72	5.52	6.53	3.45
Merged-chr14-104849440-2	chr14	104849330	104849530	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015593, intron 2 of 5)	MLTR25C|LTR|ERVK	210283.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.81	9.06	9.13	7.24	6.95	3.14	4.98	9.17	8.26	5.02	3.52	4.39
Merged-chr13-3769598-1	chr13	3769498	3769698	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34720.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.63	2.77	11.98	1.21	7.77	4.08	2.99	7.49	2.36	2.01	5.02	0.63
Merged-chr4-95200678-2	chr4	95200579	95200779	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-148457.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.67	3.77	2.28	7.24	6.95	1.57	10.96	10.07	9.05	8.54	14.57	8.14
Merged-chr14-21984959-2	chr14	21984858	21985058	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4643.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	8.48	10.82	9.13	10.05	5.32	8.15	8.64	9.59	8.06	8.54	5.02	2.51
Merged-chr3-82876558-2	chr3	82876461	82876661	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277170)	promoter-TSS (NM_001277170)	-78.0	NM_001146328	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	1.62	3.77	2.28	1.21	10.23	2.82	10.3	12.06	3.54	11.55	10.55	1.88
Merged-chr15-82165467-2	chr15	82165381	82165581	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	B3|SINE|B2	18212.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	11.71	9.06	8.56	2.41	5.73	16.93	5.31	4.01	18.29	9.04	9.55	9.08
Merged-chr1-60015619-1	chr1	60015519	60015719	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357296, intron 4 of 10)	A-rich|Low_complexity|Low_complexity	27503.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	4.04	2.26	3.99	7.24	2.86	6.9	4.98	7.37	1.77	0.0	7.54	2.51
Merged-chr11-104469080-2	chr11	104468991	104469191	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-230.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	10.9	12.83	13.12	10.46	14.32	9.09	3.32	9.08	9.64	10.54	9.55	7.52
Merged-chr18-73863641-2	chr18	73863550	73863750	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360973)	promoter-TSS (NM_001360973)	55.0	NM_001360973	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	10.5	8.3	11.41	6.44	13.5	9.09	9.97	10.4	4.33	7.53	5.53	5.01
Merged-chr5-91283233-1	chr5	91283133	91283333	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040428)	promoter-TSS (NR_040428)	-157.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	1.21	0.5	0.0	0.8	2.45	6.27	7.97	5.24	1.97	4.02	1.0	2.82
Merged-chr10-56686098-1	chr10	56685998	56686198	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	254117.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	1.62	0.5	5.7	1.61	5.73	10.66	8.97	5.97	1.18	3.01	1.51	1.57
Merged-chr9-7605795-1	chr9	7605695	7605895	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22436.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	6.46	2.01	8.56	6.44	4.91	5.02	5.98	10.23	2.36	5.52	6.03	4.07
Merged-chr11-117725115-2	chr11	117725014	117725214	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54534.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	6.46	6.79	6.28	9.25	11.05	10.35	13.29	15.28	7.28	12.05	3.52	5.64
Merged-chr17-74394946-1	chr17	74394846	74395046	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-662.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.81	0.0	1.14	0.4	6.55	5.96	2.99	5.36	5.11	4.02	7.54	4.39
Merged-chr4-133449871-1	chr4	133449771	133449971	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30262.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	8.08	4.78	3.99	4.42	9.41	15.68	7.31	8.5	1.97	2.01	2.01	0.94
Merged-chr11-5735099-3	chr11	5734975	5735175	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6101.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	2.83	7.04	6.85	6.03	6.14	7.21	4.32	7.12	11.6	5.02	11.05	15.66
Merged-chr19-16436175-1	chr19	16436075	16436275	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008137, exon 1 of 7)	5' UTR (NM_008137, exon 1 of 7)	508.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	2.83	3.02	7.42	1.61	9.0	6.27	7.97	6.7	4.52	2.51	7.03	3.76
Merged-chr2-102876351-2	chr2	102876253	102876453	+	742.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	MIRc|SINE|MIR	25312.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.4	4.78	3.42	2.41	7.77	6.59	3.99	9.73	14.95	11.55	27.13	9.4
Merged-chr9-109021951-2	chr9	109021849	109022049	+	742.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16618.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	14.13	12.32	11.41	8.45	6.55	10.35	12.95	5.13	9.24	9.54	10.05	6.89
Merged-chr8-104219991-3	chr8	104219874	104220074	+	742.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001141922)	TTS (NM_001141922)	28584.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	14.94	10.82	6.85	4.83	4.91	16.93	3.32	10.37	16.13	8.54	17.08	8.77
Merged-chr19-29364277-3	chr19	29364165	29364365	+	742.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2394.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	15.75	13.58	29.66	1.21	1.23	8.78	3.32	4.63	21.44	10.54	12.06	6.27
Merged-chr2-27725160-3	chr2	27725067	27725267	+	742.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	14584.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	19.38	10.31	10.84	10.46	8.59	13.48	5.31	14.3	15.34	16.07	12.56	6.58
Merged-chr7-16426289-3	chr7	16426155	16426355	+	742.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198631, intron 10 of 13)	intron (NM_198631, intron 10 of 13)	25059.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	10.9	10.82	13.12	11.66	4.91	12.86	7.97	12.73	7.67	7.53	16.58	7.83
Merged-chr11-79522166-3	chr11	79522094	79522294	+	742.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077496, intron 1 of 1)	MT2B|LTR|ERVL	1568.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	16.15	7.8	12.55	4.83	10.23	11.29	3.99	5.33	13.77	12.05	14.57	21.93
Merged-chr12-55863220-1	chr12	55863120	55863320	+	742.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155205, intron 8 of 10)	intron (NR_155205, intron 8 of 10)	26854.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	1.62	3.52	0.0	0.8	9.0	7.84	4.65	6.11	12.98	5.52	4.52	4.39
Merged-chr7-45396400-3	chr7	45396291	45396491	+	742.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-649.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	8.88	7.8	7.42	8.85	6.95	16.62	9.3	0.98	18.29	13.05	13.06	6.58
Merged-chr16-43109524-3	chr16	43109437	43109637	+	742.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	Lx3B|LINE|L1	-137747.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	8.88	6.54	8.56	8.04	14.73	22.26	16.61	19.65	8.46	3.51	9.04	4.7
Merged-chr5-121545458-3	chr5	121545349	121545549	+	742.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010765, exon 1 of 14)	5' UTR (NM_010765, exon 1 of 14)	443.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	8.48	9.56	6.85	9.25	9.82	15.99	11.29	7.65	9.44	15.06	14.57	10.65
Merged-chr3-121657091-1	chr3	121656991	121657191	+	742.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10638.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.63	1.76	5.7	1.61	5.73	5.02	7.97	7.96	13.37	3.01	9.04	5.64
Merged-chr2-13559512-3	chr2	13559402	13559602	+	742.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14809.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	8.08	7.55	1.71	12.07	10.64	12.23	8.97	12.06	10.23	8.54	16.08	8.46
Merged-chr3-60438867-3	chr3	60438747	60438947	+	742.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33983.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.23	11.32	20.54	18.5	7.36	6.27	3.65	5.36	28.32	9.04	26.63	15.35
Merged-chr14-69862682-3	chr14	69862592	69862792	+	742.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	L2a|LINE|L2	22285.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	9.69	7.29	5.7	3.22	6.95	7.84	3.99	10.21	16.13	15.57	8.54	8.14
Merged-chr8-3661025-2	chr8	3660931	3661131	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-4731.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	1.21	2.01	3.99	3.22	2.45	5.64	4.98	5.72	11.8	12.05	11.05	6.27
Merged-chr11-77216190-3	chr11	77216153	77216353	+	742.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177710)	promoter-TSS (NM_177710)	-172.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.65	7.04	3.42	9.65	5.32	7.84	2.66	7.6	12.59	12.55	9.55	7.83
Merged-chr8-77543548-1	chr8	77543448	77543648	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5849.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	6.06	5.03	0.57	4.02	6.55	8.15	7.31	8.13	3.74	6.03	3.52	2.82
Merged-chr10-78054836-2	chr10	78054740	78054940	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284199)	promoter-TSS (NM_001284199)	-495.0	NM_001284198	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	2.83	4.78	5.7	3.62	4.09	7.53	5.98	11.02	10.42	5.52	12.06	7.21
Merged-chr12-3771242-2	chr12	3771147	3771347	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-35733.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.86	10.06	6.85	3.22	6.55	14.42	1.33	5.16	10.42	6.53	14.07	5.01
Merged-chr3-105052262-3	chr3	105052172	105052372	+	742.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	681.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	13.33	7.29	23.96	4.02	4.91	11.29	6.64	3.34	21.44	8.03	11.05	6.27
Merged-chr4-139201976-2	chr4	139201834	139202034	+	742.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	7823.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.23	7.04	5.7	5.63	8.18	2.82	3.65	2.33	6.1	14.56	9.04	6.27
Merged-chr4-62697625-2	chr4	62697523	62697723	+	742.174988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134257, intron 12 of 15)	intron (NM_134257, intron 12 of 15)	23649.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	8.08	7.8	15.4	16.49	8.59	4.7	4.98	8.55	4.92	4.52	17.08	4.39
Merged-chr6-52424653-3	chr6	52424558	52424758	+	742.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67793.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	9.29	6.79	13.69	4.42	9.82	10.98	8.97	9.34	10.82	4.02	19.6	6.27
Merged-chr9-121536290-3	chr9	121536183	121536383	+	742.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-40589.0	NM_031161	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	12.11	8.05	6.28	10.86	11.86	6.9	3.99	7.04	17.9	23.1	10.55	4.7
Merged-chr1-191421183-2	chr1	191421084	191421284	+	742.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24143.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	5.25	2.77	5.7	2.41	13.91	7.53	7.64	11.8	9.64	10.54	17.08	6.89
Merged-chr8-41600440-2	chr8	41600360	41600560	+	742.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-183342.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.81	2.01	1.14	3.62	10.64	24.46	17.27	33.79	12.0	7.53	9.55	6.89
Merged-chr1-165587896-3	chr1	165587799	165587999	+	742.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46642.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	9.29	2.77	8.56	14.08	25.36	10.35	18.93	37.12	4.92	7.03	13.06	12.22
Merged-chr4-46611361-2	chr4	46611252	46611452	+	742.075012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198664, intron 9 of 12)	intron (NM_198664, intron 9 of 12)	-9423.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	12.52	7.55	17.68	16.49	13.5	6.9	9.3	9.53	6.49	4.52	4.02	3.76
Merged-chr7-90017347-3	chr7	90017224	90017424	+	742.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-11835.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	9.69	8.3	5.13	9.65	15.14	4.08	10.63	5.38	9.83	9.04	12.06	10.34
Merged-chr19-53906353-3	chr19	53906319	53906519	+	742.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168491, intron 1 of 11)	B3A|SINE|B2	3068.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	7.67	8.05	6.85	5.63	6.95	4.39	10.96	12.9	4.52	12.05	9.04	5.01
Merged-chr18-6335455-1	chr18	6335355	6335555	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-93931.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	2.83	5.03	3.99	5.63	5.32	3.76	5.98	6.93	9.05	8.03	8.04	4.39
Merged-chr6-28410190-1	chr6	28410090	28410290	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	11534.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	8.88	3.52	7.99	2.41	2.05	6.9	4.65	5.8	9.44	3.51	17.08	6.27
Merged-chr10-80623125-1	chr10	80623025	80623225	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	345.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	4.44	5.53	3.99	6.84	9.82	9.09	2.66	6.08	12.19	15.06	18.09	12.22
Merged-chr10-85003713-1	chr10	85003613	85003813	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	86100.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	10.5	5.53	5.7	12.87	1.64	3.14	3.99	7.74	7.08	9.04	6.03	2.82
Merged-chr11-62847006-1	chr11	62846906	62847106	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	-117.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	3.23	4.78	6.85	4.42	4.5	6.9	1.0	1.99	12.0	8.03	4.02	9.08
Merged-chr15-84120804-1	chr15	84120704	84120904	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029427, intron 2 of 9)	intron (NM_029427, intron 2 of 9)	2371.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	2.02	2.52	4.56	3.22	4.09	8.15	0.33	6.64	6.29	7.03	3.01	5.95
Merged-chr10-15300793-2	chr10	15300695	15300895	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-490982.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.85	4.78	14.26	9.25	15.55	4.39	3.65	7.85	3.34	6.53	9.55	7.83
Merged-chr13-20142082-1	chr13	20141982	20142182	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	51575.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.27	6.04	0.57	7.64	2.86	6.59	1.66	6.7	8.46	5.52	3.52	4.39
Merged-chr15-31465959-1	chr15	31465859	31466059	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12270.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.81	0.75	9.13	1.21	8.59	5.33	3.32	7.71	5.7	4.02	5.53	6.27
Merged-chr14-72600541-3	chr14	72600460	72600660	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	109443.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	8.08	3.77	2.28	11.26	9.0	8.78	4.98	7.91	10.62	5.02	13.06	14.72
Merged-chr10-127261915-2	chr10	127261803	127262003	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039000, intron 1 of 28)	MIRb|SINE|MIR	1460.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	5.65	4.78	20.54	4.83	6.95	6.59	6.64	12.62	14.55	5.52	4.02	6.89
Merged-chr1-166254166-1	chr1	166254066	166254266	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164528)	promoter-TSS (NM_001164528)	27.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	1.62	3.52	2.28	4.83	2.05	5.33	3.65	9.73	3.34	2.01	11.05	4.39
Merged-chr19-17326720-1	chr19	17326620	17326820	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001136484, exon 3 of 3)	3' UTR (NM_001136484, exon 3 of 3)	12785.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.21	2.77	0.0	2.41	3.27	0.63	4.98	7.6	8.65	1.0	5.02	3.76
Merged-chr1-161361844-2	chr1	161361754	161361954	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33584.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	10.09	3.27	9.13	15.28	15.55	14.42	7.64	15.9	5.51	4.02	9.55	3.76
Merged-chr16-31878767-2	chr16	31878673	31878873	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013900)	promoter-TSS (NM_013900)	-37.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	6.06	10.82	3.99	4.02	9.82	5.96	4.32	6.53	9.64	5.52	10.05	7.83
Merged-chr11-16752153-1	chr11	16752053	16752253	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007912)	promoter-TSS (NM_007912)	-50.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	2.42	1.26	8.56	7.24	4.91	4.39	4.98	6.64	5.7	3.51	7.54	7.83
Merged-chr3-67576924-2	chr3	67576805	67577005	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5863.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	5.65	4.53	2.28	1.61	6.14	12.23	6.64	3.42	12.78	4.52	15.58	3.13
Merged-chr11-101983499-1	chr11	101983399	101983599	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1292.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	5.65	2.52	4.56	6.03	1.64	5.33	4.98	3.84	11.8	7.03	2.01	9.4
Merged-chr15-34060887-1	chr15	34060787	34060987	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21832.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.02	3.27	0.0	3.62	6.95	4.39	5.98	7.23	3.15	5.52	8.54	1.88
Merged-chr8-82984678-1	chr8	82984578	82984778	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	121322.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.46	3.27	12.55	12.87	6.55	4.39	4.32	13.54	14.16	15.06	27.13	8.46
Merged-chr9-102852399-1	chr9	102852299	102852499	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	Lx9|LINE|L1	17479.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	9.69	2.77	13.69	7.24	6.55	7.21	8.64	9.03	0.0	0.0	0.5	4.39
Merged-chr18-21000443-1	chr18	21000343	21000543	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303005)	promoter-TSS (NM_001303005)	-857.0	NM_019706	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	4.85	1.76	7.99	3.62	8.59	4.7	3.99	6.36	7.28	3.51	11.05	3.13
Merged-chr18-53915193-1	chr18	53915093	53915293	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	53080.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.44	1.01	2.85	2.82	9.82	7.21	2.99	7.09	0.39	0.0	0.0	0.0
Merged-chr6-31321697-1	chr6	31321597	31321797	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	77076.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	8.08	2.77	5.13	4.02	2.45	5.96	1.99	6.0	6.88	4.02	8.04	2.51
Merged-chr19-56547610-1	chr19	56547510	56547710	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	512.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.63	1.76	5.7	3.62	4.09	5.64	1.66	6.98	3.93	5.02	7.54	4.39
Merged-chr7-90213648-1	chr7	90213548	90213748	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51784.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	2.83	0.0	1.71	0.0	3.27	1.57	2.99	9.03	5.51	11.05	7.03	7.83
Merged-chr6-50000975-1	chr6	50000875	50001075	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109266.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.4	0.5	1.14	4.83	3.27	1.57	5.98	3.0	3.15	3.01	1.51	2.82
Merged-chr4-8380890-1	chr4	8380790	8380990	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-141849.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	4.44	8.05	5.7	4.83	2.45	6.9	4.65	6.9	8.85	3.01	8.54	4.07
Merged-chr8-82376327-1	chr8	82376227	82376427	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	MLT2B3|LTR|ERVL	26259.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.46	3.02	9.13	4.02	7.77	6.27	4.65	7.54	14.75	10.04	7.54	2.19
Merged-chr2-148655145-2	chr2	148655054	148655254	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17461.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	5.25	2.77	3.42	8.04	8.18	11.29	6.64	14.16	14.16	25.11	31.66	9.4
Merged-chr16-48829266-1	chr16	48829166	48829366	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12410.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	2.02	2.77	5.7	6.03	4.91	2.82	6.98	5.47	7.67	1.0	5.53	1.88
Merged-chr5-140738402-1	chr5	140738302	140738502	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	B4A|SINE|B4	14275.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.23	0.75	0.0	5.23	1.64	3.45	6.31	5.27	3.34	3.01	2.51	5.33
Merged-chr8-57479861-1	chr8	57479761	57479961	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7999.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.81	0.75	6.85	0.0	1.23	5.02	6.31	5.21	2.16	2.01	1.0	0.63
Merged-chr10-120227802-2	chr10	120227680	120227880	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025431, intron 1 of 2)	intron (NM_025431, intron 1 of 2)	720.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.06	2.01	9.7	4.02	2.45	11.29	2.99	7.71	8.26	5.02	6.53	7.21
Merged-chr10-42123012-2	chr10	42122919	42123119	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104637.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.04	3.77	12.55	12.47	2.45	6.27	11.96	15.64	5.9	2.01	6.53	2.82
Merged-chr18-36687906-1	chr18	36687806	36688006	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172831, intron 9 of 12)	URR1B|DNA|hAT-Charlie	8019.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	3.23	10.06	4.56	3.62	11.45	17.87	4.32	4.35	1.38	4.52	3.52	2.51
Merged-chr4-53232591-1	chr4	53232491	53232691	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13605.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.63	2.01	6.85	4.83	4.91	5.33	4.98	10.6	4.72	10.04	2.51	4.39
Merged-chr8-40410635-1	chr8	40410535	40410735	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13180.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.0	2.52	2.28	3.62	0.41	2.51	8.3	4.99	0.0	0.5	0.5	0.0
Merged-chr7-133122276-4	chr7	133122212	133122412	+	741.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 1 of 10)	CpG	1171.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.25	4.02	10.27	6.44	6.55	5.96	5.98	5.83	6.49	10.54	2.01	2.19
Merged-chr13-101797216-2	chr13	101797114	101797314	+	741.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28997.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.63	3.77	2.85	8.45	8.59	11.29	6.64	13.29	12.0	7.53	14.57	9.4
Merged-chr8-10794798-3	chr8	10794693	10794893	+	741.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87661.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	10.09	13.83	12.55	10.86	14.73	11.92	5.65	18.64	9.05	1.0	6.03	8.77
Merged-chr11-97900003-3	chr11	97899902	97900102	+	741.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15848.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	10.09	9.06	6.85	3.22	6.55	14.42	4.98	8.75	19.67	7.53	11.05	14.72
Merged-chr5-34526989-2	chr5	34526867	34527067	+	741.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1183.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.86	4.28	6.28	2.41	9.82	4.39	9.3	7.57	3.34	10.54	12.06	9.4
Merged-chr4-58304746-2	chr4	58304647	58304847	+	741.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18785.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	16.96	5.28	10.84	14.48	11.05	7.84	3.65	9.06	0.0	0.0	0.5	0.94
Merged-chr9-114794708-2	chr9	114794594	114794794	+	741.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12701.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	6.06	6.04	11.41	7.64	9.0	7.84	1.66	5.94	12.0	6.53	10.55	8.77
Merged-chr7-75739258-2	chr7	75739157	75739357	+	741.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 29 of 36)	intron (NM_029332, intron 29 of 36)	-109081.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.44	6.54	1.14	2.01	10.23	10.66	5.98	8.69	8.65	6.03	10.05	14.72
Merged-chr11-31850530-3	chr11	31850409	31850609	+	741.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20431.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.63	3.77	7.42	4.42	13.91	5.02	8.97	11.33	10.03	3.01	12.06	2.82
Merged-chr8-64941639-3	chr8	64941520	64941720	+	741.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5565.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	12.92	7.55	6.28	8.04	11.05	10.35	2.66	12.06	13.77	7.53	16.08	7.21
Merged-chr2-127248563-2	chr2	127248486	127248686	+	741.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	611.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	6.06	9.31	5.7	4.02	17.18	14.11	9.63	7.85	5.9	10.04	10.05	10.96
Merged-chr1-180331530-2	chr1	180331468	180331668	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 1 of 7)	CpG	-1019.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.83	2.52	6.28	9.25	9.0	7.53	4.32	7.32	7.28	9.54	1.0	8.14
Merged-chr3-94366946-2	chr3	94366808	94367008	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4464.0	NM_001136117	271944.0	Mm.271006	NM_001136117	ENSMUSG00000091648	C2cd4d	Gm659	C2 calcium-dependent domain containing 4D	protein-coding	6.86	3.52	4.56	6.03	2.05	8.15	4.98	6.25	8.65	5.52	6.03	4.39
Merged-chr6-114854342-1	chr6	114854242	114854442	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	MTC|LTR|ERVL-MaLR	67479.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	2.02	4.28	10.27	0.0	6.55	7.53	7.64	8.75	8.26	3.51	9.04	5.01
Merged-chr15-76872530-1	chr15	76872430	76872630	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1095.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	14.54	4.02	6.85	2.41	9.82	8.47	6.64	6.39	5.9	6.03	0.0	4.39
Merged-chr6-34927340-3	chr6	34927242	34927442	+	741.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	6394.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	10.09	9.81	12.55	6.03	11.45	10.66	5.98	11.72	6.69	9.54	9.55	8.46
Merged-chr16-4907629-3	chr16	4907530	4907730	+	741.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21530.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	8.08	3.02	13.69	8.45	12.68	9.09	11.29	10.51	11.6	13.56	16.58	9.4
Merged-chr15-73675667-3	chr15	73675541	73675741	+	741.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31864.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	3.23	4.78	9.7	8.85	8.59	9.09	11.63	15.93	10.42	4.52	10.55	8.77
Merged-chr7-99139962-3	chr7	99139862	99140062	+	741.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1182.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.88	1.76	12.55	15.28	10.23	6.9	4.98	6.98	11.21	7.53	10.05	10.02
Merged-chr5-8807339-2	chr5	8807232	8807432	+	741.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011075, intron 4 of 27)	intron (NM_011075, intron 4 of 27)	-8809.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	4.85	6.54	19.97	9.25	12.68	8.47	18.27	15.0	4.52	4.02	6.03	2.82
Merged-chr17-25117433-2	chr17	25117343	25117543	+	741.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1476.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	15.34	8.3	5.7	4.42	11.86	26.03	5.65	6.76	7.87	8.03	4.02	1.25
Merged-chr1-173580029-1	chr1	173579929	173580129	+	741.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	19245.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0.0	0.0	0.0	0.0	11.45	10.03	1.0	6.5	7.87	7.03	11.56	1.88
Merged-chr10-17485614-1	chr10	17485514	17485714	+	741.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-237614.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.4	1.76	2.28	8.45	5.73	5.02	8.64	6.34	5.31	9.04	6.53	2.51
Merged-chr7-35595056-1	chr7	35594956	35595156	+	741.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152519, intron 2 of 28)	intron (NR_152519, intron 2 of 28)	8809.0	NR_152519	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	4.04	2.77	8.56	4.83	6.14	8.78	5.98	7.37	0.39	1.0	1.0	1.25
Merged-chr12-4548830-3	chr12	4548725	4548925	+	741.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24712.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	12.11	6.29	8.56	3.22	9.0	21.32	3.32	7.18	24.0	22.59	15.58	9.71
Merged-chr8-37898206-1	chr8	37898106	37898306	+	741.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	353996.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.81	0.0	0.0	0.4	1.64	0.0	2.99	1.35	10.82	16.57	8.54	1.25
Merged-chr3-84356803-2	chr3	84356702	84356902	+	741.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040752, intron 3 of 3)	RSINE1|SINE|B4	23119.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.23	5.28	5.13	3.62	3.68	5.64	7.97	9.93	7.87	1.0	17.59	8.77
Merged-chr8-26696919-2	chr8	26696814	26697014	+	741.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	127509.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	10.9	5.53	3.99	8.45	5.32	16.31	11.96	9.56	5.7	7.53	5.53	5.95
Merged-chr17-45608624-2	chr17	45608521	45608721	+	741.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-6519.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.81	3.02	9.7	0.8	9.82	17.87	10.63	9.03	9.83	15.06	13.06	12.53
Merged-chr10-75797835-3	chr10	75797748	75797948	+	741.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	-117.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	6.46	11.07	8.56	8.45	9.0	6.27	10.96	12.5	6.49	9.04	19.09	5.01
Merged-chr7-101366513-3	chr7	101366424	101366624	+	741.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-11598.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.46	6.29	13.12	1.21	9.0	19.13	10.3	5.69	14.36	16.07	8.04	6.89
Merged-chr13-59677015-3	chr13	59676909	59677109	+	741.600037	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1225.0	NM_027307	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	14.54	11.57	9.7	11.26	9.41	14.11	12.95	5.55	13.96	23.1	24.62	10.02
Merged-chr1-144197879-3	chr1	144197781	144197981	+	741.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20509.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	3.23	8.55	5.13	11.26	18.0	8.15	9.63	18.7	14.75	17.57	10.55	7.83
Merged-chr13-89742394-2	chr13	89742300	89742500	+	741.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019389, exon 1 of 14)	5' UTR (NM_019389, exon 1 of 14)	112.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	2.02	4.78	0.0	3.62	2.86	7.53	8.3	7.79	8.46	7.03	9.04	11.28
Merged-chr8-79587479-2	chr8	79587382	79587582	+	741.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52194.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	11.71	7.55	2.85	8.85	15.96	12.86	7.31	14.13	4.33	8.54	14.07	2.19
Merged-chr14-120323286-2	chr14	120323172	120323372	+	741.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	16820.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.62	2.01	1.14	2.41	7.77	10.35	3.65	10.32	15.74	11.05	13.06	8.46
Merged-chr2-38378466-3	chr2	38378394	38378594	+	741.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27186.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	9.29	11.32	6.28	6.03	8.59	15.99	4.32	5.24	11.41	4.02	8.04	6.58
Merged-chr1-84437765-3	chr1	84437669	84437869	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-153124.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	14.13	6.79	7.99	11.66	12.68	8.47	8.64	12.95	17.11	10.54	12.06	11.59
Merged-chr15-58933305-3	chr15	58933228	58933428	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023172)	promoter-TSS (NM_023172)	402.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	6.46	12.58	10.84	6.84	11.05	11.6	8.97	7.85	10.23	9.54	12.56	9.71
Merged-chr18-4790496-3	chr18	4790416	4790616	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-21970.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	8.48	12.83	10.84	12.07	4.5	10.03	8.64	8.55	8.85	5.02	7.03	9.08
Merged-chr16-36724372-3	chr16	36724266	36724466	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	30388.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.27	6.54	12.55	12.47	11.86	10.66	7.97	9.62	9.44	6.53	15.07	3.13
Merged-chr11-79920062-2	chr11	79919968	79920168	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42319.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.25	4.78	2.28	8.45	5.32	3.14	4.65	5.41	13.18	10.54	11.05	9.4
Merged-chr7-107611013-1	chr7	107610913	107611113	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	RMER19B|LTR|ERVK	4169.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.04	3.27	1.71	3.22	6.55	2.51	6.31	5.69	5.31	6.03	5.53	5.64
Merged-chr2-25166494-2	chr2	25166386	25166586	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14272.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	6.06	10.82	9.7	8.04	3.27	7.84	2.99	5.47	16.33	5.02	10.05	5.33
Merged-chr9-22309826-1	chr9	22309726	22309926	+	741.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-2188.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	2.42	1.01	1.14	1.61	3.68	6.27	1.99	3.9	10.82	3.01	18.09	6.27
Merged-chr16-87695498-1	chr16	87695398	87695598	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3456.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.23	4.02	3.42	6.44	5.73	4.08	5.31	7.74	5.51	8.54	14.57	4.7
Merged-chr7-19910977-1	chr7	19910877	19911077	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027514, intron 4 of 7)	intron (NM_027514, intron 4 of 7)	10166.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	3.23	5.03	6.28	5.63	2.05	9.41	5.98	6.53	2.95	3.01	7.03	3.45
Merged-chr2-160062708-3	chr2	160062629	160062829	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46076.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	14.94	9.81	12.55	11.66	13.09	10.03	10.63	16.63	8.06	6.03	22.61	6.27
Merged-chr2-72850028-2	chr2	72849960	72850160	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36343.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	6.46	3.27	3.42	3.62	5.73	8.78	2.33	3.67	16.92	10.54	6.53	9.4
Merged-chr7-143045524-2	chr7	143045442	143045642	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-7208.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.65	8.55	9.13	11.26	9.82	9.41	3.65	10.79	7.67	7.03	10.55	2.82
Merged-chr2-27688847-1	chr2	27688747	27688947	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	11646.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.63	1.01	4.56	1.61	8.18	5.96	4.32	6.84	8.26	2.51	6.53	4.39
Merged-chr12-80150791-2	chr12	80150702	80150902	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17958.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	4.44	6.29	2.28	2.01	14.73	7.84	4.32	7.77	15.14	11.05	10.55	7.83
Merged-chr19-46186711-2	chr19	46186604	46186804	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178930, intron 3 of 39)	intron (NM_178930, intron 3 of 39)	34146.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	13.33	6.79	11.41	7.24	4.09	12.86	3.65	7.04	6.49	1.51	2.01	4.07
Merged-chr9-63930178-2	chr9	63930076	63930276	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	91883.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.25	8.3	14.83	11.66	0.82	7.21	5.31	6.03	3.74	0.0	3.52	5.95
Merged-chr5-65986586-1	chr5	65986486	65986686	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	17699.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	1.62	3.27	11.41	3.22	9.41	5.02	10.96	5.72	12.0	7.03	3.52	5.95
Merged-chr3-84443070-1	chr3	84442970	84443170	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001205355, exon 12 of 12)	3' UTR (NM_001205355, exon 12 of 12)	36421.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.0	0.0	0.0	0.8	5.32	5.96	9.3	7.68	0.0	2.01	2.51	6.27
Merged-chr1-153754861-2	chr1	153754756	153754956	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	5430.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	10.5	7.04	6.85	4.42	5.73	8.47	4.65	7.07	10.42	2.51	2.51	5.64
Merged-chr6-22453308-2	chr6	22453193	22453393	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97212.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.23	5.79	6.28	14.08	10.23	9.72	13.62	18.14	9.83	4.52	6.03	7.83
Merged-chr1-151245387-1	chr1	151245287	151245487	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99099.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.23	1.51	0.0	2.41	7.36	9.09	6.98	10.32	4.52	3.51	6.53	6.89
Merged-chr18-84671971-2	chr18	84671866	84672066	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023149, intron 7 of 11)	intron (NM_023149, intron 7 of 11)	10093.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	10.5	5.53	5.7	15.69	8.59	10.03	8.3	18.93	5.9	7.53	20.1	3.13
Merged-chr18-50052948-1	chr18	50052848	50053048	+	741.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-334.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.25	5.28	3.42	4.83	7.36	10.35	5.31	3.73	10.62	11.55	16.08	5.01
Merged-chr7-123019858-1	chr7	123019758	123019958	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	49294.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.5	0.0	0.0	15.55	12.86	1.33	4.71	6.88	12.55	5.02	1.88
Merged-chr3-108767054-1	chr3	108766954	108767154	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	27396.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	1.62	5.79	1.14	1.21	3.27	7.84	5.65	5.58	1.77	5.52	2.01	2.82
Merged-chr2-109959306-3	chr2	109959243	109959443	+	741.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	41696.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	6.06	9.06	8.56	13.27	15.55	7.53	8.97	11.92	20.46	13.56	22.61	9.08
Merged-chrX-7673910-2	chrX	7673863	7674063	+	741.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037581, exon 6 of 6)	non-coding (NR_037581, exon 6 of 6)	-2573.0	NM_019755	18824.0	Mm.18565	NM_019755	ENSMUSG00000031146	Plp2	mIMA4	proteolipid protein 2	protein-coding	4.04	3.52	9.13	5.63	6.14	6.9	5.31	4.85	4.13	8.03	5.53	6.89
Merged-chr11-97744201-4	chr11	97744034	97744234	+	741.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106180)	promoter-TSS (NR_106180)	570.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	3.63	4.53	5.7	1.61	6.55	7.21	6.64	5.1	6.88	9.04	6.03	6.58
Merged-chr11-3910766-3	chr11	3910656	3910856	+	741.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153142, intron 1 of 1)	intron (NM_153142, intron 1 of 1)	3908.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	15.75	5.53	8.56	7.24	15.96	14.11	12.62	17.3	10.42	14.06	15.07	10.96
Merged-chr12-55315435-3	chr12	55315306	55315506	+	741.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025373, intron 3 of 6)	B1F|SINE|Alu	-12406.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	9.69	11.57	9.13	10.86	11.05	7.21	2.66	16.15	10.82	13.05	8.04	8.77
Merged-chr18-32378127-4	chr18	32377948	32378148	+	741.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045403, exon 1 of 3)	non-coding (NR_045403, exon 1 of 3)	236.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	7.27	3.27	6.28	6.84	1.64	2.51	4.65	7.12	4.72	3.01	3.52	7.21
Merged-chr7-3825781-2	chr7	3825692	3825892	+	741.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	19259.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	16.96	10.56	15.4	26.95	0.41	0.0	0.0	0.0	8.46	9.04	15.07	8.14
Merged-chr2-30928502-3	chr2	30928392	30928592	+	741.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24509.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	13.33	7.29	10.84	8.45	6.55	21.01	8.97	9.06	10.23	13.56	8.54	10.34
Merged-chr2-153338882-2	chr2	153338780	153338980	+	741.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6930.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	10.9	8.05	15.4	13.27	13.09	9.09	3.32	9.73	5.31	8.03	7.03	2.19
Merged-chr4-152029198-2	chr4	152029093	152029293	+	741.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031867, intron 5 of 5)	B2_Mm2|SINE|B2	-1522.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	7.27	2.52	3.42	6.03	11.45	9.09	7.64	2.38	12.19	6.03	12.56	6.89
Merged-chr2-70971251-2	chr2	70971152	70971352	+	741.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	47122.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	8.48	6.54	1.71	3.22	8.59	9.72	10.3	10.88	10.82	10.54	27.13	6.27
Merged-chr4-99185537-3	chr4	99185437	99185637	+	741.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8397.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.27	5.03	5.7	20.51	9.0	5.96	1.66	12.95	30.09	10.54	13.06	9.71
Merged-chr11-116464055-2	chr11	116463976	116464176	+	741.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-9729.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	3.63	7.8	2.85	1.61	6.14	5.33	3.65	6.31	11.8	4.52	13.57	10.02
Merged-chr15-79396936-3	chr15	79396870	79397070	+	741.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	5949.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	19.38	9.06	7.99	5.63	22.5	37.63	12.62	14.44	10.23	22.09	3.01	7.52
Merged-chr13-18795074-3	chr13	18794996	18795196	+	741.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77804.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	9.69	4.78	16.54	10.05	7.77	5.64	22.59	18.64	10.62	9.54	18.09	12.53
Merged-chr8-117346065-2	chr8	117345971	117346171	+	741.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3099.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.06	6.29	9.13	6.84	15.96	8.47	5.31	11.24	5.11	5.52	8.04	5.95
Merged-chr13-64254321-2	chr13	64254222	64254422	+	741.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	B1_Mus2|SINE|Alu	5622.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	1.62	1.01	0.0	1.61	2.05	0.0	7.31	1.96	7.67	7.53	5.53	3.76
Merged-chr8-61607810-2	chr8	61607716	61607916	+	741.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-16647.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.46	3.02	7.99	5.23	6.95	5.64	2.66	8.21	9.05	10.54	6.53	6.89
Merged-chr6-122853745-2	chr6	122853649	122853849	+	741.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	2408.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	3.23	8.8	3.99	4.42	14.73	10.35	5.98	7.71	9.24	11.55	12.06	5.33
Merged-chr4-135286972-3	chr4	135286869	135287069	+	741.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14209.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.85	9.06	10.27	12.47	13.5	7.53	6.64	16.71	10.03	13.56	16.58	10.65
Merged-chr3-22143409-3	chr3	22143311	22143511	+	741.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	66759.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.85	10.82	17.68	6.84	9.0	8.78	5.31	5.3	12.78	11.05	7.03	8.77
Merged-chr6-51756007-3	chr6	51755932	51756132	+	741.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	8.48	14.34	10.84	11.26	11.86	12.23	8.97	6.95	7.47	14.06	4.52	10.96
Merged-chr9-70237766-2	chr9	70237657	70237857	+	741.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	30407.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	9.29	6.54	15.4	10.05	14.73	9.72	7.64	14.22	8.06	4.52	9.04	4.07
Merged-chr10-26996176-2	chr10	26996069	26996269	+	741.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223657.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	12.11	10.82	7.42	7.24	12.68	17.56	3.99	13.07	4.72	10.54	6.03	4.7
Merged-chr11-98294669-2	chr11	98294561	98294761	+	741.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	32055.0	NR_039579	100628613.0		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	10.5	5.79	1.71	3.22	8.18	10.03	7.64	6.56	4.33	10.54	8.54	5.01
Merged-chr1-85841135-4	chr1	85841122	85841322	+	741.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 5 of 9)	RLTR14|LTR|ERV1	47205.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	1.62	7.8	6.28	5.23	5.73	6.59	8.3	9.56	8.06	3.01	6.53	10.34
Merged-chr2-73484809-3	chr2	73484692	73484892	+	741.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	961.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.67	8.8	10.84	6.03	6.55	6.59	15.94	10.46	8.65	11.05	15.58	11.59
Merged-chr2-164083819-3	chr2	164083726	164083926	+	741.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	9648.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	5.65	8.8	3.99	7.64	17.18	5.96	11.63	5.21	11.41	6.03	16.08	5.33
Merged-chr6-40689388-3	chr6	40689295	40689495	+	741.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171003, intron 31 of 47)	intron (NM_001171003, intron 31 of 47)	60564.0	NM_001171003	232714.0	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	8.08	9.06	12.55	8.45	12.68	10.03	9.63	17.13	11.6	12.05	9.04	5.33
Merged-chr7-35117155-2	chr7	35117037	35117237	+	741.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2156.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.86	3.52	5.13	10.46	15.55	6.27	9.63	25.32	1.97	2.01	2.51	4.07
Merged-chr2-44988786-3	chr2	44988730	44988930	+	741.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355289, exon 11 of 11)	exon (NM_001355289, exon 11 of 11)	34347.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.25	3.77	6.28	8.85	2.05	0.0	4.32	5.75	10.82	13.05	10.55	3.45
Merged-chr16-76371009-5	chr16	76370966	76371166	+	741.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	1983.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	9.69	7.8	4.56	6.03	4.09	2.2	5.98	4.74	10.82	2.51	5.53	2.82
Merged-chr5-29388369-3	chr5	29388286	29388486	+	741.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9996.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	11.31	10.31	10.27	7.64	11.45	10.03	8.64	7.96	10.62	4.52	14.57	11.9
Merged-chr2-117343718-3	chr2	117343582	117343782	+	741.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	-805.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.04	7.29	9.7	5.63	8.18	11.29	8.3	12.79	12.0	6.03	16.08	8.46
Merged-chr1-165763014-3	chr1	165762928	165763128	+	741.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-730.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	12.52	7.29	10.27	5.23	11.45	10.98	8.97	6.81	10.42	6.53	10.55	11.59
Merged-chr11-98457897-3	chr11	98457772	98457972	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	11038.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	13.33	8.55	7.42	6.03	13.91	13.48	6.64	7.85	17.31	12.55	11.05	6.89
Merged-chr1-193002495-1	chr1	193002395	193002595	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301370, intron 2 of 8)	intron (NM_001301370, intron 2 of 8)	33280.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.42	3.77	10.84	4.02	0.0	0.0	0.0	0.0	7.67	10.54	17.59	10.96
Merged-chr18-78830185-1	chr18	78830085	78830285	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	Tigger7|DNA|TcMar-Tigger	-233235.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	7.27	1.26	14.26	0.4	6.95	6.59	5.65	8.16	3.15	0.5	1.51	1.25
Merged-chr17-36123560-1	chr17	36123460	36123660	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2116.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0.4	3.52	0.0	0.0	0.0	0.0	0.0	0.0	15.74	7.53	7.54	7.83
Merged-chr2-27247382-2	chr2	27247286	27247486	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-83.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	10.09	9.06	4.56	9.25	7.77	8.15	3.65	7.4	4.13	5.02	10.05	2.19
Merged-chr17-71161784-2	chr17	71161684	71161884	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21748.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.27	6.54	7.42	6.44	14.32	5.02	8.97	9.67	9.24	4.02	10.55	9.4
Merged-chr18-46213306-1	chr18	46213206	46213406	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-699.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.06	2.26	1.71	5.23	6.55	3.76	3.32	2.36	9.83	14.06	11.05	4.07
Merged-chr6-97486984-1	chr6	97486884	97487084	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	836.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.44	1.01	5.13	0.8	2.45	5.33	6.64	3.56	8.85	7.53	4.52	7.52
Merged-chr17-80131647-1	chr17	80131547	80131747	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	4176.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	3.23	0.5	3.42	5.23	6.95	1.57	3.32	7.21	9.44	5.52	6.53	5.01
Merged-chr5-129008124-2	chr5	129008018	129008218	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	454.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	12.11	4.02	9.13	8.45	9.82	5.96	8.3	5.52	10.03	5.52	7.54	7.21
Merged-chr6-31077976-1	chr6	31077876	31078076	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14883.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	4.44	1.01	1.71	3.62	9.41	8.78	7.31	6.2	3.74	8.03	2.51	5.95
Merged-chr10-22002272-2	chr10	22002136	22002336	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7570.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.25	6.54	0.0	4.02	5.32	13.48	2.99	2.5	4.13	2.51	2.01	4.07
Merged-chr2-168206432-3	chr2	168206293	168206493	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310086, intron 1 of 4)	CpG	719.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	8.88	5.28	3.42	6.44	3.68	4.08	4.32	4.6	12.39	3.51	11.05	8.14
Merged-chr8-123212041-2	chr8	123211952	123212152	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	736.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	9.69	3.27	5.7	1.61	2.45	7.53	4.65	8.5	11.21	10.04	14.57	9.08
Merged-chr4-108879046-1	chr4	108878946	108879146	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023537)	promoter-TSS (NM_023537)	-24.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	6.06	2.52	6.28	3.22	0.41	3.45	0.66	0.25	12.0	12.05	24.62	7.83
Merged-chr4-48585638-3	chr4	48585510	48585710	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356272, exon 1 of 10)	exon (NM_001356272, exon 1 of 10)	436.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	7.67	11.07	2.28	4.42	8.18	10.35	7.97	13.09	9.05	6.53	9.04	10.02
Merged-chr10-96294928-2	chr10	96294821	96295021	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	68714.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.4	3.77	6.85	5.63	12.68	5.96	5.98	10.32	8.46	2.51	12.06	4.07
Merged-chr8-80483433-1	chr8	80483333	80483533	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10612.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	4.44	4.28	5.13	2.41	4.5	5.64	4.98	6.79	7.67	4.02	5.53	6.89
Merged-chr10-61370595-2	chr10	61370501	61370701	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12922.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	5.65	1.76	5.7	4.02	2.05	2.82	4.98	5.16	5.7	2.01	2.51	8.46
Merged-chr17-44261959-1	chr17	44261859	44262059	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	73387.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	2.83	4.28	5.13	1.21	4.09	5.02	6.64	6.62	2.36	9.54	6.53	2.51
Merged-chr11-118477965-1	chr11	118477865	118478065	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153103, intron 1 of 13)	intron (NR_153103, intron 1 of 13)	1133.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.81	3.27	3.99	1.61	2.86	8.47	8.3	5.3	3.93	9.54	2.01	5.01
Merged-chr15-38472317-1	chr15	38472217	38472417	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18230.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	3.63	4.02	1.71	2.01	4.91	4.7	1.99	5.44	5.11	5.52	5.02	8.46
Merged-chr2-145906081-1	chr2	145905981	145906181	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026425, intron 1 of 5)	B2_Mm1t|SINE|B2	2840.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.65	2.77	1.14	3.62	3.27	9.09	2.33	0.31	11.21	6.03	11.05	2.51
Merged-chr19-37608647-1	chr19	37608547	37608747	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175353, intron 17 of 21)	MTE2b|LTR|ERVL-MaLR	58229.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	1.21	4.53	3.42	1.61	8.18	5.96	5.98	10.51	1.18	0.5	1.0	1.25
Merged-chr7-125630520-1	chr7	125630420	125630620	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021887, intron 7 of 8)	intron (NM_021887, intron 7 of 8)	27091.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.0	2.26	2.28	1.61	3.27	5.02	3.99	6.98	4.52	0.5	3.52	1.88
Merged-chr4-141160434-1	chr4	141160334	141160534	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	12512.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.46	7.29	9.13	6.44	3.27	6.9	4.65	9.28	3.74	9.04	3.52	5.95
Merged-chr5-67297626-2	chr5	67297520	67297720	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9335.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	7.27	4.53	7.42	9.65	9.41	6.27	4.32	11.13	7.47	11.55	9.55	10.96
Merged-chr11-61176494-1	chr11	61176394	61176594	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1435.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	10.09	2.01	2.28	5.63	2.86	5.96	3.32	7.57	3.74	4.52	4.02	10.02
Merged-chr6-108331385-1	chr6	108331285	108331485	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	118289.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.86	6.04	3.42	5.63	7.77	10.98	8.97	5.69	6.88	2.01	2.51	0.0
Merged-chr17-56630408-1	chr17	56630308	56630508	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175350, intron 1 of 21)	IAPLTR2a|LTR|ERVK	2265.0	NM_175350	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	5.25	4.53	0.0	5.23	1.64	9.09	13.29	3.7	1.77	2.51	2.51	3.45
Merged-chr1-120451673-1	chr1	120451573	120451773	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53351.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	8.88	3.27	1.71	7.24	4.09	0.31	1.33	3.25	11.21	13.56	19.6	10.34
Merged-chr4-6352020-1	chr4	6351920	6352120	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-13660.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.85	2.26	5.7	7.24	2.86	3.14	5.98	7.96	1.97	2.01	8.04	2.51
Merged-chr10-41684742-1	chr10	41684642	41684842	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358562, intron 4 of 47)	intron (NM_001358562, intron 4 of 47)	31721.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	7.67	3.02	7.42	4.02	2.86	4.39	3.32	5.13	6.1	4.02	7.03	6.89
Merged-chr5-114937054-1	chr5	114936954	114937154	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_145209, exon 7 of 7)	exon (NM_145209, exon 7 of 7)	-5148.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.81	8.8	12.55	0.0	0.41	0.94	1.99	0.73	6.69	3.01	2.01	1.25
Merged-chr3-144628135-1	chr3	144628035	144628235	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57708.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.4	3.02	3.42	2.41	3.68	7.21	3.65	6.95	4.33	4.02	10.55	3.76
Merged-chr11-114851794-3	chr11	114851735	114851935	+	740.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147217)	promoter-TSS (NM_147217)	-195.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	7.27	9.06	15.4	12.07	16.77	12.23	7.64	6.84	10.23	18.58	5.53	5.95
Merged-chr18-60381925-3	chr18	60381820	60382020	+	740.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021792, intron 2 of 2)	intron (NM_021792, intron 2 of 2)	5891.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	6.46	10.82	7.99	8.85	13.5	8.15	10.63	7.71	15.74	9.54	18.09	11.9
Merged-chr4-126553287-3	chr4	126553189	126553389	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3691.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	9.69	7.29	14.26	7.64	19.64	14.74	13.62	23.44	9.24	9.54	13.57	5.64
Merged-chr1-156002035-3	chr1	156001927	156002127	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28772.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	6.46	7.8	21.68	8.04	9.82	7.84	8.3	7.26	14.36	14.06	13.06	8.46
Merged-chr9-102779693-3	chr9	102779591	102779791	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40043.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	12.52	9.56	7.99	21.72	11.45	17.25	8.3	7.93	6.1	9.04	12.56	8.77
Merged-chr6-85160393-3	chr6	85160306	85160506	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22642.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	6.86	9.56	9.7	12.07	17.59	16.93	8.64	9.93	16.13	11.55	8.54	7.83
Merged-chr19-5433152-3	chr19	5433040	5433240	+	740.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7996.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	12.11	7.8	5.7	8.45	11.45	12.86	3.32	7.82	10.03	11.05	19.6	11.9
Merged-chr10-13941642-3	chr10	13941524	13941724	+	740.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24451.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	13.73	6.04	15.4	4.42	10.64	15.99	6.64	10.32	13.57	20.59	11.56	8.77
Merged-chr17-84186588-4	chr17	84186455	84186655	+	740.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	1392.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	11.31	3.52	9.13	1.61	2.86	1.88	0.0	5.64	9.05	5.52	6.53	2.82
Merged-chr15-78942864-3	chr15	78942736	78942936	+	740.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133800)	TTS (NM_133800)	-4888.0	NM_001039156	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	8.48	8.3	7.99	10.86	10.64	4.08	8.97	4.68	10.82	13.05	14.57	9.4
Merged-chr3-116184065-1	chr3	116183965	116184165	+	740.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54377.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	1.21	2.26	3.42	3.22	11.05	5.33	8.3	7.43	3.54	1.51	7.03	1.57
Merged-chr12-118198926-2	chr12	118198824	118199024	+	740.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010060, exon 1 of 82)	5' UTR (NM_010060, exon 1 of 82)	119.0	NM_010060	13411.0	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	7.67	5.03	4.56	8.45	11.86	6.27	12.95	5.64	9.05	7.53	16.58	5.33
Merged-chr9-113793350-3	chr9	113793268	113793468	+	740.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	38.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	8.08	7.55	7.42	6.03	14.73	7.84	6.31	10.07	9.24	4.52	13.57	8.46
Merged-chr5-140663182-3	chr5	140663138	140663338	+	740.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028833)	TTS (NM_028833)	-14207.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	3.23	7.8	4.56	5.63	6.55	4.08	16.28	8.02	7.87	4.52	4.02	6.89
Merged-chr7-134689270-3	chr7	134689158	134689358	+	740.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18571.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	6.06	4.78	10.27	10.46	8.59	15.05	3.32	7.57	18.1	8.54	20.6	11.9
Merged-chr10-78095331-3	chr10	78095215	78095415	+	740.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25947.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	6.06	7.8	15.4	6.03	11.05	4.7	6.31	9.59	11.21	13.56	16.08	6.89
Merged-chr16-44725105-3	chr16	44724991	44725191	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	790.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	9.29	5.28	9.13	13.27	2.45	7.84	4.98	11.41	10.62	13.05	12.56	5.01
Merged-chr1-64675665-1	chr1	64675565	64675765	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14994.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	5.65	12.07	15.4	19.31	3.27	0.0	3.65	2.83	0.59	1.0	2.01	0.63
Merged-chr15-8442980-3	chr15	8442876	8443076	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	1487.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	13.33	8.05	5.7	4.83	8.18	2.2	3.99	9.62	10.03	33.14	19.6	7.83
Merged-chr14-122464668-3	chr14	122464605	122464805	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	953.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	3.63	8.3	8.56	11.66	3.27	5.33	5.98	7.49	11.6	10.04	6.03	3.76
Merged-chr1-138186914-1	chr1	138186814	138187014	+	740.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11609.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.85	5.28	3.42	9.25	11.45	12.23	2.33	6.06	4.92	6.03	3.01	5.64
Merged-chr11-116446174-3	chr11	116446083	116446283	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033267, intron 7 of 13)	intron (NM_001033267, intron 7 of 13)	8164.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	8.88	4.28	1.14	6.44	7.77	9.41	4.32	5.72	21.05	23.6	26.13	11.59
Merged-chr11-80300964-3	chr11	80300837	80301037	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139228)	promoter-TSS (NM_139228)	25.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	7.27	5.28	2.28	7.64	8.59	12.23	9.63	6.45	12.19	11.55	13.57	12.53
Merged-chr8-94171677-2	chr8	94171565	94171765	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-953.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	8.08	8.8	4.56	4.83	13.09	12.54	7.31	8.3	12.0	8.03	7.54	6.89
Merged-chr2-132264201-2	chr2	132264109	132264309	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	1061.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	5.65	3.27	1.14	3.22	4.5	4.08	6.31	6.67	10.82	9.04	2.51	10.02
Merged-chr2-148527938-2	chr2	148527835	148528035	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84400.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.63	2.01	1.14	8.04	5.73	5.96	9.3	11.33	5.51	9.04	13.06	7.21
Merged-chr1-86402476-2	chr1	86402387	86402587	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13126.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	1.21	7.8	7.99	3.22	4.09	6.9	2.66	5.61	8.46	9.54	16.58	10.34
Merged-chr19-21736463-2	chr19	21736380	21736580	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41860.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	7.67	3.02	2.85	2.41	9.82	19.13	6.64	5.83	14.36	16.07	11.05	2.82
Merged-chr18-4352402-3	chr18	4352322	4352522	+	740.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	531.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	15.75	18.11	10.27	10.46	9.82	9.41	7.64	8.86	20.06	17.07	14.57	8.77
Merged-chr9-94716890-2	chr9	94716774	94716974	+	740.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 4 of 15)	Lx9|LINE|L1	-34955.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	5.65	1.76	2.85	8.04	9.0	5.33	7.31	12.45	8.26	9.04	14.07	9.71
Merged-chr5-52168655-3	chr5	52168554	52168754	+	740.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042620, intron 5 of 11)	intron (NM_001042620, intron 5 of 11)	21892.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	9.69	5.28	1.14	14.48	11.05	15.99	12.62	11.41	5.51	12.05	12.56	4.39
Merged-chr4-117682234-2	chr4	117682139	117682339	+	740.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023178)	promoter-TSS (NM_023178)	-14.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	11.31	15.34	17.68	8.85	5.73	7.21	2.33	3.76	10.23	9.54	14.57	7.52
Merged-chr16-20412153-2	chr16	20412055	20412255	+	740.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	14239.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	2.83	7.55	2.28	5.63	9.0	4.39	2.99	10.09	21.44	15.06	13.06	9.4
Merged-chr14-86679055-2	chr14	86678953	86679153	+	740.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 27 of 27)	B4|SINE|B4	433083.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	8.08	7.8	9.13	12.87	8.59	7.53	10.3	17.13	0.39	1.0	5.02	1.88
Merged-chr18-23914712-2	chr18	23914612	23914812	+	740.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-39976.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	2.42	0.5	1.14	0.8	11.05	9.09	6.98	11.47	10.23	12.55	16.08	7.52
Merged-chr3-108382551-3	chr3	108382445	108382645	+	740.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040560, exon 2 of 3)	non-coding (NR_040560, exon 2 of 3)	1196.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	3.23	12.32	11.41	12.07	4.09	11.29	8.64	4.35	12.19	15.06	9.04	5.01
Merged-chr7-110014464-3	chr7	110014367	110014567	+	740.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-3784.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	16.96	7.29	10.84	11.26	13.09	15.99	8.3	10.6	8.65	8.03	17.59	15.04
Merged-chr7-30998249-2	chr7	30998155	30998355	+	740.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR22_Mus|LTR|ERVK	16334.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	3.23	3.77	5.13	12.47	11.05	7.84	7.64	8.36	11.8	3.01	16.08	8.14
Merged-chr16-44190285-3	chr16	44190161	44190361	+	740.538879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029889, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	16864.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	11.31	6.54	6.85	19.71	13.91	8.47	7.97	17.1	17.31	3.51	7.54	7.83
Merged-chr4-6513118-3	chr4	6513001	6513201	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58830.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	12.52	7.04	8.56	10.05	11.45	8.15	5.98	16.32	6.29	8.54	18.09	13.47
Merged-chr5-96161118-2	chr5	96161026	96161226	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144910, intron 1 of 11)	CpG	421.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	15.75	9.06	3.99	6.03	5.32	8.78	9.97	6.93	7.28	4.02	7.54	10.02
Merged-chr6-119417561-2	chr6	119417455	119417655	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	-27.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.44	3.02	7.42	2.41	16.36	2.2	9.97	16.23	7.87	3.01	7.54	5.33
Merged-chr19-44397921-1	chr19	44397821	44398021	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009127, exon 6 of 6)	exon (NM_009127, exon 6 of 6)	9788.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	2.02	4.02	3.42	6.84	7.36	3.76	16.61	6.76	5.11	2.01	8.54	3.76
Merged-chr15-51955214-2	chr15	51955116	51955316	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36544.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	7.67	5.79	2.28	4.83	7.77	4.7	10.96	15.67	18.88	3.01	10.55	9.71
Merged-chr2-166967108-2	chr2	166967008	166967208	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-2391.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	8.48	8.3	9.7	11.66	8.18	4.39	8.64	9.76	5.31	3.01	5.02	8.14
Merged-chr2-128126705-2	chr2	128126538	128126738	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	600.0	NM_009754	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	18.17	19.62	12.55	4.83	12.27	17.56	10.63	5.33	4.33	17.57	15.07	14.41
Merged-chr19-25000350-1	chr19	25000250	25000450	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	821.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.25	3.27	1.14	6.44	2.45	7.84	4.98	9.79	3.93	5.52	12.56	2.82
Merged-chr12-80109954-2	chr12	80109803	80110003	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	3110.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.67	6.04	2.28	4.02	17.18	7.53	1.66	1.54	7.28	10.54	5.53	8.14
Merged-chr5-99243379-2	chr5	99243208	99243408	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	9619.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.86	4.78	6.85	8.04	9.0	5.64	5.98	7.04	5.11	6.03	11.05	2.82
Merged-chr11-63920709-2	chr11	63920633	63920833	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	CpG	1551.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	7.27	5.53	10.84	10.05	7.36	2.82	3.65	2.8	11.01	3.51	19.09	7.52
Merged-chr18-38410041-3	chr18	38409927	38410127	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A1|LTR|ERV1	-8880.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	10.9	7.8	6.28	0.0	23.32	22.58	3.99	6.06	15.74	21.09	6.03	1.88
Merged-chr2-84541648-3	chr2	84541557	84541757	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34784.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	11.71	9.81	5.7	12.87	6.14	14.42	7.31	18.42	14.75	9.04	12.06	6.58
Merged-chr3-59260334-2	chr3	59260235	59260435	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 31 of 43)	intron (NM_177855, intron 31 of 43)	2650.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	9.29	4.28	6.28	1.21	3.27	5.96	3.32	7.12	11.01	3.01	14.07	5.33
Merged-chr8-125783607-1	chr8	125783507	125783707	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	49404.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.04	1.51	2.28	4.02	5.73	6.59	8.3	5.13	5.7	4.52	5.53	5.33
Merged-chr9-37517665-1	chr9	37517565	37517765	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146222, intron 2 of 3)	intron (NM_146222, intron 2 of 3)	-10424.0	NR_136939	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	8.08	4.53	1.14	2.41	8.18	4.08	6.64	5.05	3.74	8.54	3.01	1.88
Merged-chr12-85588777-2	chr12	85588683	85588883	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10322.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.27	6.79	3.42	1.61	11.05	9.41	2.66	8.13	4.92	9.04	4.52	3.13
Merged-chrX-23723726-3	chrX	23723619	23723819	+	740.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	Lx8b|LINE|L1	30668.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	7.67	2.01	13.69	16.09	20.05	8.15	21.59	17.02	9.64	13.56	14.07	10.65
Merged-chr5-88631721-3	chr5	88631614	88631814	+	740.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	43866.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	12.11	8.3	7.42	8.45	33.14	12.23	6.31	15.45	15.54	14.06	11.56	8.14
Merged-chr12-70911162-3	chr12	70911039	70911239	+	740.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-26718.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	6.86	13.08	6.28	9.65	11.05	15.05	13.29	5.55	6.29	14.06	18.59	8.77
Merged-chr4-134616429-3	chr4	134616331	134616531	+	740.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-48580.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	11.31	6.04	14.26	11.26	12.27	14.74	2.66	11.24	15.14	6.03	9.04	7.52
Merged-chr4-129190680-3	chr4	129190588	129190788	+	740.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347203)	promoter-TSS (NM_001347203)	893.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	8.88	7.29	10.27	10.46	8.59	13.8	2.66	8.64	12.19	11.05	8.04	9.4
Merged-chr5-139377663-3	chr5	139377551	139377751	+	740.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-46.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	10.9	6.79	9.13	3.22	9.0	5.33	13.95	17.3	8.65	6.53	7.54	8.46
Merged-chr1-93485489-3	chr1	93485395	93485595	+	740.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159719, intron 1 of 12)	intron (NM_001159719, intron 1 of 12)	6434.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	8.08	6.04	2.28	2.82	11.05	4.7	1.33	6.0	18.69	15.57	22.11	7.52
Merged-chr1-166730398-2	chr1	166730309	166730509	+	740.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-48564.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	2.02	9.06	2.28	3.22	7.36	9.41	5.65	8.78	7.28	8.03	12.56	6.89
Merged-chr2-51284869-3	chr2	51284795	51284995	+	740.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	43064.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	8.08	12.07	18.83	10.05	12.68	5.96	8.97	12.2	9.24	3.51	8.54	1.88
Merged-chr19-36083078-3	chr19	36082978	36083178	+	740.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	-638.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	9.29	6.54	11.41	6.44	2.05	9.09	5.98	10.4	11.21	11.55	19.09	7.21
Merged-chr19-23116437-2	chr19	23116340	23116540	+	740.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24786.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.5	2.28	0.8	8.59	5.02	5.65	11.89	6.49	11.05	12.06	9.08
Merged-chr11-4660023-2	chr11	4659942	4660142	+	740.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22249.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	7.67	5.53	6.85	5.63	8.18	7.84	5.65	14.02	8.26	11.55	7.03	10.96
Merged-chr4-45532478-2	chr4	45532396	45532596	+	740.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1668.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	17.36	7.55	6.28	5.63	15.96	7.84	6.98	9.56	10.42	11.55	9.04	4.7
Merged-chr19-59021008-3	chr19	59020879	59021079	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 9 of 16)	intron (NM_001114312, intron 9 of 16)	55090.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	10.9	4.02	3.99	6.84	6.95	1.57	7.31	11.44	13.18	12.55	8.04	7.21
Merged-chr8-94739982-1	chr8	94739882	94740082	+	740.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5702.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.81	9.06	2.28	6.44	2.05	3.14	0.0	1.57	9.64	2.01	14.07	7.21
Merged-chr16-24569891-3	chr16	24569774	24569974	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	40560.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	7.27	6.29	9.13	15.69	6.55	7.53	6.31	15.42	12.78	6.03	12.56	5.64
Merged-chr7-127614706-3	chr7	127614571	127614771	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	196.0	NR_155452	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	9.69	11.82	3.42	4.02	9.0	7.84	7.64	8.27	7.87	8.54	6.03	9.4
Merged-chr9-119936687-1	chr9	119936587	119936787	+	740.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028735)	promoter-TSS (NM_028735)	871.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	3.23	4.53	0.0	2.41	7.36	5.33	6.64	7.26	5.11	4.02	3.01	3.76
Merged-chr15-66825586-1	chr15	66825486	66825686	+	740.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	6243.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.23	1.51	2.28	5.63	9.0	4.7	6.98	6.62	3.34	4.02	6.53	1.88
Merged-chr7-105642547-3	chr7	105642448	105642648	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360053)	TTS (NM_001360053)	2103.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	11.31	5.79	2.28	10.05	6.55	5.33	4.32	10.21	9.44	13.05	15.58	5.01
Merged-chr8-94782857-3	chr8	94782762	94782962	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009142)	TTS (NM_009142)	10682.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	8.88	8.3	8.56	10.86	11.05	10.35	4.32	3.28	25.96	17.57	24.12	19.74
Merged-chr9-45254581-3	chr9	45254490	45254690	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_136903, exon 6 of 6)	non-coding (NR_136903, exon 6 of 6)	12117.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	7.27	6.04	9.13	6.84	14.73	8.78	9.3	16.99	10.82	14.06	8.54	8.77
Merged-chr8-61894219-3	chr8	61894127	61894327	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	8463.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	9.69	9.06	1.71	2.41	11.45	9.09	6.98	9.11	12.98	13.05	9.04	5.33
Merged-chr8-126936184-1	chr8	126936084	126936284	+	740.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024214, intron 4 of 4)	B2_Mm2|SINE|B2	9737.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	6.46	4.78	8.56	4.02	4.5	13.17	5.31	2.58	15.34	11.05	12.06	6.58
Merged-chr8-126887454-1	chr8	126887354	126887554	+	740.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	38434.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	1.01	4.56	0.4	3.27	1.25	0.66	3.5	10.62	5.02	17.08	7.83
Merged-chr10-22297454-2	chr10	22297363	22297563	+	740.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-9257.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	4.44	5.28	7.99	13.27	4.5	9.09	9.3	13.15	6.88	4.02	3.52	4.07
Merged-chr17-79355743-3	chr17	79355632	79355832	+	740.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	7.67	12.07	7.99	5.63	8.18	10.35	6.64	9.5	15.34	10.04	15.07	11.28
Merged-chr2-126500726-2	chr2	126500617	126500817	+	740.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-870.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.06	5.03	2.85	7.24	5.32	7.84	5.65	7.51	9.44	12.55	12.56	9.08
Merged-chr11-113100875-2	chr11	113100807	113101007	+	740.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100931.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	1.01	0.0	0.0	8.18	12.23	5.98	4.43	17.51	5.52	23.11	17.54
Merged-chr4-66816715-3	chr4	66816585	66816785	+	740.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10866.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.44	4.53	7.99	6.84	9.82	7.21	14.95	8.78	5.9	10.54	11.05	1.88
Merged-chr13-89904784-2	chr13	89904704	89904904	+	740.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-162292.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.04	2.77	1.71	5.23	7.77	9.41	8.3	12.25	12.98	10.54	4.52	5.64
Merged-chr7-16294472-1	chr7	16294372	16294572	+	740.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7677.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	10.9	4.02	4.56	0.0	4.09	4.7	2.66	4.04	18.69	12.55	12.56	7.52
Merged-chr10-40095545-3	chr10	40095452	40095652	+	740.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46702.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	9.69	7.04	9.13	6.84	14.32	8.15	7.97	13.01	13.18	18.08	8.54	8.14
Merged-chr4-155197866-3	chr4	155197766	155197966	+	740.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	24669.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	8.08	8.05	14.26	9.25	11.86	10.66	13.62	18.17	8.46	27.62	14.07	9.4
Merged-chr12-3892027-3	chr12	3891950	3892150	+	740.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	306.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.46	4.78	1.71	4.83	9.0	10.03	5.65	8.78	14.95	9.04	4.02	8.77
Merged-chr1-154041076-2	chr1	154040974	154041174	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	141145.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.81	2.77	13.69	2.01	4.91	7.84	4.32	7.51	10.42	10.04	17.08	7.83
Merged-chr1-34831338-2	chr1	34831240	34831440	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	11710.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	8.88	2.01	2.28	5.63	15.55	11.6	7.97	30.42	6.49	8.54	16.58	15.98
Merged-chr17-56274678-2	chr17	56274489	56274689	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	2178.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	1.76	2.28	1.21	0.41	0.94	1.0	1.12	4.92	1.51	1.51	3.45
Merged-chr2-45034183-2	chr2	45034075	45034275	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-10998.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.81	3.27	0.0	6.44	6.95	9.41	3.99	6.93	12.19	7.53	4.02	5.33
Merged-chr11-82078233-3	chr11	82078120	82078320	+	740.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20388.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	11.31	21.88	21.68	12.07	9.82	12.54	6.31	5.1	9.83	9.04	13.57	5.64
Merged-chr14-45155791-2	chr14	45155729	45155929	+	740.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 14 of 20)	MT2A|LTR|ERVL	63596.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	3.23	2.01	6.28	3.22	5.73	6.59	11.96	7.07	5.7	3.01	4.52	3.13
Merged-chr1-152288120-3	chr1	152288020	152288220	+	740.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	98562.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	9.29	8.3	6.85	13.27	7.36	15.05	5.31	12.34	11.8	11.05	9.55	9.4
Merged-chr2-117169262-2	chr2	117169160	117169360	+	740.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 4 of 4)	intron (NM_001277256, intron 4 of 4)	-15867.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	7.27	4.28	6.28	4.42	8.59	6.59	5.31	10.49	12.19	9.04	14.57	8.77
Merged-chr8-122682683-2	chr8	122682592	122682792	+	740.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-4517.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	10.5	14.09	23.96	8.85	6.55	5.33	2.99	5.58	11.21	11.05	19.09	8.46
Merged-chr18-78161547-2	chr18	78161442	78161642	+	740.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207651, intron 13 of 21)	intron (NM_207651, intron 13 of 21)	17630.0	NM_001110273	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	2.83	8.55	2.28	3.22	4.5	9.72	8.3	7.77	10.82	18.58	14.07	7.52
Merged-chr2-159992458-3	chr2	159992379	159992579	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24174.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	8.08	6.29	6.85	5.63	23.73	7.84	7.64	11.89	10.23	15.06	14.07	8.46
Merged-chr12-35833057-1	chr12	35832957	35833157	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-92564.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	12.11	5.28	11.41	6.44	9.0	9.72	7.64	10.43	7.87	7.03	2.51	3.13
Merged-chr5-64537399-1	chr5	64537299	64537499	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60391.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.81	0.25	0.0	1.61	4.09	2.2	3.99	2.36	3.15	1.51	2.01	3.13
Merged-chr7-143008754-1	chr7	143008654	143008854	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3095.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	6.06	4.02	5.7	3.22	4.91	7.53	2.99	5.72	4.72	6.03	3.01	2.82
Merged-chr16-55152595-1	chr16	55152495	55152695	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	130642.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.0	0.0	5.7	0.8	11.45	3.45	2.66	6.5	4.52	4.02	6.03	0.94
Merged-chr5-139687839-1	chr5	139687739	139687939	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48494.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.46	5.03	2.28	4.83	6.95	2.51	5.98	6.14	4.52	4.52	2.51	0.94
Merged-chr4-134607911-1	chr4	134607811	134608011	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-40060.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	5.25	3.02	6.28	0.0	6.95	5.02	5.31	5.07	2.16	1.0	4.52	5.33
Merged-chr15-99421765-1	chr15	99421665	99421865	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001001884)	TTS (NM_001001884)	28546.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.02	3.02	2.28	1.61	4.09	5.96	1.99	4.63	9.05	1.0	1.0	5.01
Merged-chr1-36131854-1	chr1	36131754	36131954	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12459.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	3.77	0.0	0.0	3.27	6.27	5.31	7.65	2.56	4.02	9.55	5.64
Merged-chr19-11816915-1	chr19	11816815	11817015	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2488.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.81	2.52	3.42	0.0	2.45	8.78	1.99	5.07	1.38	0.0	6.53	0.63
Merged-chr17-17549131-2	chr17	17549026	17549226	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 11 of 17)	intron (NM_172827, intron 11 of 17)	75363.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	14.94	3.77	6.85	6.44	6.55	8.47	3.99	10.93	19.28	7.03	13.06	3.13
Merged-chr8-4201517-1	chr8	4201417	4201617	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346730, intron 11 of 19)	intron (NM_001346730, intron 11 of 19)	15795.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	3.63	3.52	5.7	3.62	1.64	2.82	6.64	6.98	4.92	8.54	17.08	1.57
Merged-chrX-159080711-1	chrX	159080611	159080811	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-175071.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	3.63	0.5	3.42	4.42	4.5	7.21	5.65	9.03	5.9	1.51	9.04	4.39
Merged-chr3-117328932-1	chr3	117328832	117329032	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177664, intron 3 of 6)	intron (NM_177664, intron 3 of 6)	31944.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	5.65	1.51	6.85	0.8	3.68	1.57	4.98	6.48	2.56	1.0	2.51	0.63
Merged-chr4-63385511-1	chr4	63385411	63385611	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12729.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	2.42	1.51	1.14	0.0	8.18	8.15	5.65	5.13	2.75	7.03	7.03	4.07
Merged-chr19-55561989-1	chr19	55561889	55562089	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	140215.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	1.62	1.51	5.13	5.63	5.32	6.59	4.98	5.83	6.1	1.0	6.03	5.01
Merged-chr15-51733735-1	chr15	51733635	51733835	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	131726.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.44	2.01	1.71	1.21	0.82	5.64	4.65	0.0	4.33	4.52	3.52	0.31
Merged-chr5-125059622-1	chr5	125059522	125059722	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 17 of 46)	intron (NM_011424, intron 17 of 46)	56147.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	4.85	3.77	5.13	6.84	9.41	8.15	4.98	6.08	7.28	3.51	7.03	1.57
Merged-chr7-16219654-1	chr7	16219554	16219754	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285931, intron 1 of 16)	intron (NM_001285931, intron 1 of 16)	2339.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	4.04	5.53	6.28	1.61	6.95	5.33	9.3	14.66	0.0	0.5	2.51	0.94
Merged-chr11-69996399-2	chr11	69996293	69996493	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291126)	promoter-TSS (NM_001291126)	-548.0	NM_001291126	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	12.11	5.28	6.85	4.83	16.36	5.96	1.0	5.52	10.62	13.05	8.04	5.95
Merged-chr13-10539396-1	chr13	10539296	10539496	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178593.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	2.52	0.0	0.0	9.82	5.64	1.33	6.73	3.74	2.51	7.54	3.45
Merged-chr6-146725387-1	chr6	146725287	146725487	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346666, intron 1 of 11)	CpG	457.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	9.69	10.82	15.97	9.65	6.55	15.37	13.95	12.64	15.34	16.07	18.59	6.58
Merged-chr9-40798417-1	chr9	40798317	40798517	+	740.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2856.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.4	1.76	4.56	1.21	3.27	2.51	0.66	1.88	14.95	5.52	8.54	11.59
Merged-chr19-41338036-2	chr19	41337986	41338186	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	46984.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.27	4.53	13.12	0.8	9.0	4.08	1.99	9.06	6.1	1.0	3.01	3.13
Merged-chr7-143057397-1	chr7	143057297	143057497	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3711.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	8.08	2.26	6.28	2.41	7.36	3.45	3.65	3.5	3.74	3.51	3.01	1.88
Merged-chr4-102579960-1	chr4	102579860	102580060	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-7598.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.65	2.77	1.14	3.62	2.86	2.2	1.33	3.25	0.79	1.51	2.01	1.25
Merged-chr13-119596928-3	chr13	119596809	119597009	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26910.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	1.62	9.31	3.42	7.24	7.77	5.96	10.96	0.03	9.64	7.53	10.55	12.84
Merged-chr13-85241076-1	chr13	85240976	85241176	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 8 of 24)	intron (NM_145452, intron 8 of 24)	48410.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.04	4.02	13.12	1.61	5.73	5.64	1.33	6.28	3.34	0.5	5.53	2.51
Merged-chr1-93479616-1	chr1	93479516	93479716	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_133808)	promoter-TSS (NM_133808)	555.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	9.29	12.58	9.13	12.47	13.09	8.47	8.97	10.4	14.55	12.05	14.07	18.17
Merged-chr14-111674817-1	chr14	111674717	111674917	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198865)	promoter-TSS (NM_198865)	-298.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	4.04	2.26	0.0	8.85	4.09	6.9	6.64	6.81	3.34	3.51	6.03	5.95
Merged-chr11-97657384-1	chr11	97657284	97657484	+	740.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6028.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.85	3.52	1.14	0.0	2.86	5.33	0.33	0.03	18.69	14.06	5.53	1.57
Merged-chr12-54658953-3	chr12	54658856	54659056	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2384.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	12.92	7.04	8.56	7.64	3.68	13.8	2.33	9.81	10.23	10.04	7.54	6.58
Merged-chr17-47646880-2	chr17	47646793	47646993	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198421, intron 1 of 6)	B3|SINE|B2	16203.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	6.46	9.06	5.7	7.64	6.95	11.92	3.32	9.31	10.82	4.52	4.52	6.89
Merged-chr3-8767062-1	chr3	8766962	8767162	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-100024.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.85	2.77	3.99	5.63	6.14	10.03	1.66	6.53	2.75	3.51	2.01	4.39
Merged-chr11-119909666-1	chr11	119909566	119909766	+	740.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 2)	LTR41B|LTR|ERVL	-4144.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	4.44	4.28	7.42	1.61	6.14	6.59	4.32	3.14	10.23	6.03	5.02	7.52
Merged-chr3-19904869-1	chr3	19904769	19904969	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9998.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	1.62	3.27	1.14	1.61	1.64	2.2	3.99	4.77	3.74	5.02	8.04	2.82
Merged-chr6-113751910-1	chr6	113751810	113752010	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11229.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	4.85	3.02	5.7	1.61	5.32	8.15	0.0	4.85	3.54	2.01	9.04	5.01
Merged-chr8-24559385-1	chr8	24559285	24559485	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145949, intron 1 of 9)	intron (NM_145949, intron 1 of 9)	16948.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.81	5.28	7.99	2.01	2.86	8.47	4.98	5.97	13.96	2.01	5.02	5.01
Merged-chr5-30148591-2	chr5	30148480	30148680	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178878, intron 1 of 19)	ID4_|SINE|ID	6400.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	3.23	7.55	6.85	9.65	7.77	9.41	4.65	12.45	8.46	3.01	10.55	2.82
Merged-chr6-30210988-3	chr6	30210900	30211100	+	739.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001169577)	TTS (NM_001169577)	32803.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	3.63	8.55	6.85	7.24	4.5	4.39	4.98	8.21	17.7	7.53	24.12	8.46
Merged-chr1-43814434-4	chr1	43814317	43814517	+	739.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	13291.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	5.25	5.28	4.56	10.05	12.68	4.7	15.61	6.98	6.49	5.02	9.55	6.27
Merged-chr13-73718468-3	chr13	73718374	73718574	+	739.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17694.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	12.11	9.56	8.56	7.64	9.0	5.02	0.0	9.22	11.21	6.03	11.05	5.01
Merged-chr18-53236306-2	chr18	53236202	53236402	+	739.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-9360.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.4	3.27	3.42	3.62	3.27	10.35	8.64	11.52	8.06	7.53	4.02	7.21
Merged-chr11-100721394-2	chr11	100721281	100721481	+	739.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7531.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	6.46	6.04	10.27	5.23	2.86	9.09	6.31	7.71	10.03	14.56	5.53	8.14
Merged-chr4-107876174-3	chr4	107876065	107876265	+	739.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033496, exon 21 of 21)	non-coding (NR_033496, exon 21 of 21)	-3590.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	10.09	9.06	6.85	5.63	11.05	12.23	6.64	5.64	12.19	9.54	13.06	4.07
Merged-chr5-32747834-3	chr5	32747730	32747930	+	739.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	LFSINE_Vert|SINE|tRNA	-1488.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.65	11.32	8.56	6.44	9.82	6.59	1.0	5.94	15.54	15.57	7.54	9.71
Merged-chr10-19594653-3	chr10	19594442	19594642	+	739.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	2593.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.65	6.54	5.13	6.03	10.64	8.15	8.3	4.91	8.06	6.03	3.01	5.33
Merged-chr14-121437282-2	chr14	121437185	121437385	+	739.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58055.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	7.67	2.52	8.56	7.64	6.95	10.03	11.63	13.6	9.24	14.06	10.55	7.52
Merged-chr10-111134781-2	chr10	111134691	111134891	+	739.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-30011.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.44	6.29	11.98	4.02	7.77	12.54	13.95	22.85	13.96	11.55	7.03	4.7
Merged-chr5-25662902-2	chr5	25662807	25663007	+	739.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	42890.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	1.21	8.55	10.84	4.83	8.18	6.27	8.97	9.03	6.49	13.56	9.04	9.4
Merged-chr5-127624638-2	chr5	127624544	127624744	+	739.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7252.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	12.92	6.29	13.69	8.04	6.55	8.15	4.32	6.98	2.16	1.51	1.51	2.82
Merged-chr2-160047880-2	chr2	160047773	160047973	+	739.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	31220.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.27	1.26	1.71	4.83	13.5	14.42	5.98	6.93	11.01	18.08	14.57	6.27
Merged-chr7-126097685-3	chr7	126097570	126097770	+	739.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15259.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	8.48	17.61	13.12	9.65	14.32	23.52	8.97	18.31	8.46	9.04	10.05	4.7
Merged-chr9-70851991-3	chr9	70851867	70852067	+	739.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	82841.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	9.69	6.04	5.13	8.85	9.0	10.35	8.3	16.04	12.19	13.56	5.53	7.83
Merged-chr3-122419970-3	chr3	122419869	122420069	+	739.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013867, exon 1 of 12)	5' UTR (NM_013867, exon 1 of 12)	212.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	5.25	6.79	12.55	16.09	17.59	9.41	13.95	12.06	10.23	6.53	10.55	8.14
Merged-chr2-23015062-1	chr2	23014962	23015162	+	739.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	RMER17B|LTR|ERVK	25179.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.46	4.53	8.56	3.22	4.91	4.39	5.98	2.86	12.39	15.06	16.58	9.71
Merged-chr16-38348498-3	chr16	38348395	38348595	+	739.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1496.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	9.69	11.07	12.55	5.23	18.0	7.53	7.97	12.39	12.59	7.53	16.08	5.01
Merged-chr16-3241047-3	chr16	3240765	3240965	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-351533.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.02	6.79	1.71	5.23	3.27	1.57	1.99	5.21	2.75	2.01	0.0	2.82
Merged-chr11-100555760-3	chr11	100555677	100555877	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 7 of 11)	ORR1E|LTR|ERVL-MaLR	10145.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	12.92	2.26	4.56	14.48	17.18	13.48	5.31	8.3	18.1	11.55	25.12	8.77
Merged-chrX-73691328-3	chrX	73691283	73691483	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313698, intron 4 of 7)	intron (NM_001313698, intron 4 of 7)	18250.0	NM_001142809	102857.0	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	4.04	5.53	10.84	6.84	8.59	16.31	5.31	6.9	7.67	14.56	9.04	7.52
Merged-chr7-143154057-3	chr7	143153966	143154166	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	46812.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	8.48	3.52	14.26	9.65	7.77	11.29	11.96	10.6	7.47	15.57	25.63	9.4
Merged-chr7-97174355-3	chr7	97174262	97174462	+	739.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	L1MA4A|LINE|L1	92611.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	12.52	0.5	11.41	9.65	20.05	15.37	7.97	12.36	16.72	6.53	14.57	8.46
Merged-chr16-16524526-1	chr16	16524426	16524626	+	739.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2885.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	11.71	4.02	5.13	4.42	8.18	8.15	8.3	7.63	5.51	2.01	2.51	2.51
Merged-chr2-35162076-2	chr2	35161974	35162174	+	739.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_012018, exon 30 of 44)	exon (NM_012018, exon 30 of 44)	29840.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	7.67	7.8	2.28	2.01	2.86	6.27	5.65	7.74	4.92	2.01	4.02	7.21
Merged-chr3-121184702-2	chr3	121184580	121184780	+	739.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12985.0	NM_025637	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	7.67	6.29	6.85	9.65	4.09	8.78	2.99	9.81	6.29	4.02	9.04	6.58
Merged-chr3-38237828-1	chr3	38237728	38237928	+	739.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	1.21	0.5	0.0	0.0	7.36	8.15	4.98	8.61	12.39	2.01	10.05	5.01
Merged-chr13-73822388-3	chr13	73822292	73822492	+	739.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25239.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	14.13	7.29	9.13	8.45	6.14	14.42	6.31	9.17	6.69	12.55	12.06	6.27
Merged-chr2-167926869-2	chr2	167926816	167927016	+	739.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5411.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.63	2.01	1.71	4.02	9.41	3.14	4.32	4.93	6.88	7.53	5.53	8.46
Merged-chr3-116837269-2	chr3	116837170	116837370	+	739.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22297.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	8.48	9.81	3.42	12.47	13.09	9.41	7.64	12.84	5.11	7.53	5.53	3.13
Merged-chr9-35163396-3	chr9	35163290	35163490	+	739.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12597.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	3.63	9.81	7.99	10.86	3.68	6.59	7.64	9.14	12.59	6.53	10.05	10.34
Merged-chr16-26035203-1	chr16	26035103	26035303	+	739.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70581.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	5.25	2.01	6.85	11.26	8.18	2.82	7.97	7.57	9.24	6.53	11.56	5.64
Merged-chr11-8676836-1	chr11	8676736	8676936	+	739.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-12301.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.21	5.28	4.56	2.41	2.86	6.27	2.66	3.98	13.37	4.52	12.06	9.4
Merged-chr19-37146359-3	chr19	37146217	37146417	+	739.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 2 of 10)	B1F1|SINE|Alu	-27526.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	8.08	6.54	21.11	7.64	7.36	8.15	6.98	12.34	9.24	5.02	6.53	6.89
Merged-chr10-108155874-2	chr10	108155783	108155983	+	739.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6517.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	8.08	5.79	9.13	7.64	9.0	13.48	11.96	11.83	10.42	6.53	9.55	17.23
Merged-chr15-15102373-2	chr15	15102279	15102479	+	739.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1675722.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	3.23	9.56	17.68	9.65	5.32	5.96	8.3	13.21	4.92	1.0	5.02	5.01
Merged-chr2-160288069-2	chr2	160287983	160288183	+	739.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39411.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	2.42	6.54	9.7	9.25	7.77	3.14	6.64	8.97	3.34	0.0	6.03	3.45
Merged-chr11-76780304-3	chr11	76780204	76780404	+	739.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-16726.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	5.65	7.29	10.27	8.04	11.05	7.21	6.98	16.93	13.96	12.55	17.08	14.72
Merged-chr6-127246020-3	chr6	127245904	127246104	+	739.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61963.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	9.69	12.32	11.98	6.44	11.05	4.39	5.31	6.08	23.41	14.06	24.12	7.21
Merged-chr4-19867792-3	chr4	19867694	19867894	+	739.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49067.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	7.67	6.29	10.27	10.05	4.91	4.08	12.62	17.5	15.74	9.04	12.06	7.52
Merged-chr17-12030964-3	chr17	12030867	12031067	+	739.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-88317.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	17.36	12.32	10.84	16.89	8.18	7.53	2.99	6.87	10.42	7.53	12.06	1.25
Merged-chr13-100436872-1	chr13	100436772	100436972	+	739.599976	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008670, intron 5 of 15)	intron (NM_008670, intron 5 of 15)	15992.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	9.29	10.06	13.69	18.9	0.0	6.9	10.63	3.28	4.52	6.53	1.51	5.64
Merged-chr9-32709948-2	chr9	32709859	32710059	+	739.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	13917.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.86	5.28	6.85	17.29	18.82	9.41	13.95	15.67	8.65	5.52	16.58	8.14
Merged-chr11-69428945-2	chr11	69428846	69429046	+	739.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-15271.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.44	7.8	6.28	7.64	8.59	9.09	7.97	6.0	16.52	10.54	13.06	9.71
Merged-chr6-4601567-1	chr6	4601467	4601667	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145398, intron 1 of 17)	intron (NM_145398, intron 1 of 17)	501.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	2.83	7.04	2.85	3.62	5.32	4.7	16.61	7.6	6.88	2.51	6.03	1.25
Merged-chr6-32507008-1	chr6	32506908	32507108	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 2 of 31)	intron (NM_175750, intron 2 of 31)	-4133.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.65	2.26	0.0	4.83	6.14	6.9	5.98	8.94	1.97	6.03	0.0	3.76
Merged-chr7-83742921-1	chr7	83742821	83743021	+	739.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7382.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	2.42	8.3	1.71	6.44	4.91	1.57	2.66	2.72	20.26	12.05	11.56	13.47
Merged-chr6-94583109-2	chr6	94583017	94583217	+	739.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	23298.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	3.63	2.77	17.68	8.85	4.91	7.21	5.65	13.01	0.79	0.0	0.0	0.0
Merged-chr1-131973176-1	chr1	131973076	131973276	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2567.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.63	2.77	8.56	6.03	5.32	4.7	4.98	6.06	3.54	6.53	4.52	5.64
Merged-chr10-118095189-2	chr10	118095074	118095274	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46613.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.81	1.51	1.71	0.8	2.45	4.7	7.64	8.21	12.59	9.54	8.04	1.57
Merged-chr4-47278575-2	chr4	47278467	47278667	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	70555.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.85	2.01	1.71	6.84	3.68	6.9	12.29	5.86	9.64	10.04	7.03	6.27
Merged-chr6-92269196-2	chr6	92269112	92269312	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24562.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.63	3.02	2.28	4.83	8.18	3.45	1.33	5.78	14.75	7.53	16.08	6.58
Merged-chr17-34346676-2	chr17	34346564	34346764	+	739.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2019.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	14.54	17.1	18.83	6.03	8.18	8.15	2.33	5.13	5.7	1.51	8.04	5.33
Merged-chr10-94473596-1	chr10	94473496	94473696	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-41261.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.63	3.27	2.85	6.44	5.73	5.96	7.64	6.22	8.46	8.03	11.05	8.77
Merged-chr7-100178612-1	chr7	100178512	100178712	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190950)	promoter-TSS (NM_001190950)	-71.0	NM_001360467	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	4.04	6.79	2.85	3.62	9.82	7.21	3.65	7.01	5.51	6.03	4.02	3.13
Merged-chr6-94582238-1	chr6	94582138	94582338	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	24177.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	3.23	1.51	1.14	6.44	7.36	1.57	5.31	9.45	1.38	0.0	4.02	1.88
Merged-chrX-95166515-3	chrX	95166397	95166597	+	739.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290385)	promoter-TSS (NM_001290385)	42.0	NM_001290385	236915.0	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	8.88	10.06	10.27	14.08	46.23	30.73	38.53	40.23	5.9	5.52	16.58	7.52
Merged-chr11-34220830-3	chr11	34220756	34220956	+	739.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-12767.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	2.83	8.05	10.84	7.64	11.45	11.92	6.98	2.24	11.41	9.54	18.59	4.7
Merged-chr1-171248948-3	chr1	171248793	171248993	+	739.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1236.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	15.34	4.53	8.56	0.4	4.5	10.66	4.98	3.67	17.51	9.04	6.53	9.08
Merged-chr5-135537951-2	chr5	135537866	135538066	+	739.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	7156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.46	3.27	0.0	4.02	10.23	5.96	4.98	6.76	9.44	9.54	11.05	7.52
Merged-chr4-43039096-2	chr4	43039015	43039215	+	739.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1186.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.25	8.8	0.57	6.03	8.59	6.27	8.3	6.31	6.29	6.03	8.04	6.89
Merged-chr5-74951492-2	chr5	74951399	74951599	+	739.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	2305.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	8.08	4.02	7.99	11.26	6.55	6.9	7.64	18.9	12.0	12.05	22.61	10.34
Merged-chr16-35056968-3	chr16	35056805	35057005	+	739.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	34484.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	1.62	7.04	4.56	6.44	11.45	8.47	4.65	14.55	8.85	2.51	11.56	3.13
Merged-chr7-145253268-3	chr7	145253167	145253367	+	739.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_132642)	TTS (NR_132642)	30744.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	11.71	6.79	3.42	4.42	12.27	11.92	6.31	6.31	15.54	16.07	14.57	7.83
Merged-chr2-160085469-2	chr2	160085355	160085555	+	739.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68802.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	11.71	6.79	6.28	8.04	13.91	7.21	5.65	9.59	5.11	6.03	11.56	5.64
Merged-chr10-9897169-3	chr10	9897032	9897232	+	739.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	3908.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	8.48	5.79	11.98	6.84	7.77	7.53	3.65	9.7	12.0	8.03	11.56	5.64
Merged-chr14-20785474-2	chr14	20785387	20785587	+	739.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039139, intron 2 of 18)	intron (NM_001039139, intron 2 of 18)	8601.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	7.27	10.31	7.42	2.41	2.45	13.48	7.64	7.29	6.29	11.05	4.02	5.01
Merged-chr1-60977870-3	chr1	60977768	60977968	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017480)	promoter-TSS (NM_017480)	-46.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	8.88	6.79	10.84	15.28	11.86	5.96	5.98	15.67	12.19	7.03	5.53	9.08
Merged-chr19-4136129-3	chr19	4136033	4136233	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144532, exon 5 of 6)	exon (NM_144532, exon 5 of 6)	3476.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	13.73	15.85	10.84	5.63	18.41	15.68	7.97	3.36	9.83	14.06	12.56	7.21
Merged-chr8-75096473-3	chr8	75096397	75096597	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010442, intron 2 of 4)	PB1D10|SINE|Alu	2879.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	11.71	8.3	0.57	2.41	3.68	4.7	7.97	5.92	7.47	6.03	4.52	9.71
Merged-chr13-45093948-1	chr13	45093848	45094048	+	739.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91852.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.48	19.47	12.55	13.06	15.98
Merged-chr7-101364990-3	chr7	101364902	101365102	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	MIRc|SINE|MIR	-13120.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.46	3.02	6.85	6.44	7.77	7.21	3.32	13.88	14.75	5.02	9.04	10.02
Merged-chr15-62385598-3	chr15	62385478	62385678	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-166127.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	8.48	4.78	17.68	10.05	14.32	15.68	7.31	18.62	10.03	10.04	16.58	5.33
Merged-chr16-33833976-3	chr16	33833914	33834114	+	739.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	4349.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	13.33	8.55	8.56	7.64	8.59	6.27	8.64	8.36	7.28	9.04	9.04	7.52
Merged-chr17-45610482-3	chr17	45610390	45610590	+	739.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-8388.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	7.27	8.8	6.28	13.67	11.05	10.03	1.99	5.41	13.18	14.06	9.04	8.77
Merged-chr2-117439289-3	chr2	117439181	117439381	+	739.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96404.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	9.69	7.55	11.41	7.24	6.55	13.17	1.33	9.62	11.21	11.05	15.58	6.27
Merged-chr13-33079661-3	chr13	33079577	33079777	+	739.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4426.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	8.88	13.08	2.28	8.04	11.05	5.96	7.31	6.56	13.18	11.05	13.57	8.46
Merged-chr2-167240604-2	chr2	167240476	167240676	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-39.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.23	3.52	2.85	1.61	5.73	5.02	6.31	5.05	6.1	9.54	10.05	8.46
Merged-chr6-122845098-2	chr6	122844992	122845192	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021899, exon 11 of 11)	3' UTR (NM_021899, exon 11 of 11)	11065.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	5.65	4.28	1.71	7.64	13.09	12.23	16.94	14.27	3.93	8.54	9.04	10.34
Merged-chr10-18927548-2	chr10	18927456	18927656	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	82485.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	3.23	5.53	6.28	7.64	2.05	6.9	6.31	6.79	16.33	6.03	12.06	8.77
Merged-chr8-94696157-2	chr8	94696085	94696285	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026385)	promoter-TSS (NM_026385)	57.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	5.25	6.79	2.28	3.62	4.5	3.45	6.31	5.3	11.01	6.53	7.54	9.4
Merged-chr19-47918140-2	chr19	47918040	47918240	+	739.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	1159.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	3.23	1.01	7.99	13.67	5.32	0.63	11.29	10.88	3.15	6.53	5.02	4.07
Merged-chr4-95830539-3	chr4	95830425	95830625	+	739.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 11 of 15)	intron (NM_001113412, intron 11 of 15)	136510.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.04	8.05	13.69	8.45	3.27	8.78	3.65	6.59	13.18	9.04	13.57	12.53
Merged-chr7-100191006-3	chr7	100190924	100191124	+	739.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12341.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	9.29	7.55	3.99	8.04	9.0	10.35	11.29	5.07	11.6	9.54	13.57	4.07
Merged-chr6-59022832-3	chr6	59022745	59022945	+	739.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	1657.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	4.85	8.8	8.56	10.86	9.82	5.33	9.63	18.64	9.24	13.56	11.56	8.46
Merged-chr3-28053288-3	chr3	28053210	28053410	+	739.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 11 of 25)	L1MD2|LINE|L1	69139.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.46	9.06	7.42	10.05	13.91	4.7	8.3	6.25	12.98	13.56	4.02	10.96
Merged-chr16-33777418-3	chr16	33777366	33777566	+	739.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-16571.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	14.54	6.54	7.99	4.02	6.14	28.54	5.31	15.0	10.03	8.54	17.08	12.53
Merged-chr2-30067203-3	chr2	30067167	30067367	+	739.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204875, intron 1 of 7)	CpG	793.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	7.27	8.55	5.7	8.45	9.41	9.72	5.98	8.89	9.44	11.05	6.53	13.78
Merged-chr9-40797221-2	chr9	40797121	40797321	+	739.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-4052.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.06	3.02	5.13	4.42	11.86	2.2	8.97	9.06	10.03	7.53	8.54	3.45
Merged-chr12-17507321-2	chr12	17507213	17507413	+	739.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.83	6.79	6.28	1.61	6.55	12.23	6.31	3.28	18.1	16.07	13.06	8.77
Merged-chr13-110683847-2	chr13	110683758	110683958	+	739.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219641.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.81	0.0	4.56	2.82	9.41	1.88	8.3	9.03	5.9	11.55	4.02	7.83
Merged-chr10-127195562-2	chr10	127195479	127195679	+	739.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045715, intron 1 of 3)	CpG	130.0	NM_030714	80904.0	Mm.271724	NM_030714	ENSMUSG00000040415	Dtx3	Deltex3|mg310	deltex 3, E3 ubiquitin ligase	protein-coding	4.44	4.02	6.85	6.03	5.32	5.96	2.33	4.12	9.24	3.01	13.06	6.58
Merged-chr1-143985202-2	chr1	143985062	143985262	+	739.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18987.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	4.85	1.26	4.56	9.25	10.64	6.9	6.64	22.96	7.28	5.02	23.62	5.33
Merged-chr16-20621470-4	chr16	20621296	20621496	+	739.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028420)	promoter-TSS (NM_028420)	-118.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	10.09	5.03	2.85	4.42	5.73	7.21	10.96	5.58	8.26	6.03	12.56	3.76
Merged-chr5-105496793-2	chr5	105496677	105496877	+	739.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-22694.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	13.73	8.05	6.28	7.24	10.23	21.32	8.97	12.17	10.42	3.51	7.03	5.33
Merged-chr18-3008730-2	chr18	3008643	3008843	+	739.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	114669.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	9.29	7.8	11.98	9.65	7.77	6.59	7.97	8.69	0.98	1.51	2.01	2.19
Merged-chrX-53006288-3	chrX	53006183	53006383	+	739.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013556, intron 3 of 8)	intron (NM_013556, intron 3 of 8)	18205.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	2.42	4.53	14.83	14.48	9.82	8.47	9.3	18.48	24.0	11.05	4.52	10.96
Merged-chr17-30197085-1	chr17	30196985	30197185	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192046.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	1.62	2.26	4.56	4.83	13.91	2.82	3.65	5.38	2.16	12.05	3.01	3.76
Merged-chrX-142383061-1	chrX	142382961	142383161	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	7474.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	3.23	2.01	1.71	7.64	5.73	6.9	1.99	7.29	1.97	1.51	3.01	1.57
Merged-chr7-53626230-1	chr7	53626130	53626330	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	265659.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.4	2.01	0.0	0.0	9.0	5.33	7.97	18.45	3.93	7.03	4.52	4.39
Merged-chr12-101976889-1	chr12	101976789	101976989	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016856, intron 1 of 14)	intron (NM_016856, intron 1 of 14)	915.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	2.42	6.29	2.28	5.23	3.27	11.29	7.31	3.14	6.1	3.51	8.54	5.33
Merged-chr2-163433965-1	chr2	163433865	163434065	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4502.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0.81	0.75	4.56	4.02	4.5	2.51	7.31	5.61	3.34	2.01	1.0	4.39
Merged-chr13-104863645-1	chr13	104863545	104863745	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029984, exon 1 of 3)	exon (NM_029984, exon 1 of 3)	248.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	6.46	2.26	2.28	4.02	8.59	3.76	6.31	7.51	1.38	1.51	4.52	6.58
Merged-chr10-68127343-2	chr10	68127246	68127446	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 6 of 9)	intron (NM_023598, intron 6 of 9)	147776.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.04	5.79	8.56	12.07	18.82	10.98	12.29	19.96	9.24	8.54	7.03	10.34
Merged-chr1-137910452-1	chr1	137910352	137910552	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56003.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.21	1.51	2.28	0.0	2.86	1.25	7.31	11.05	3.74	6.03	2.51	1.57
Merged-chr11-102900952-1	chr11	102900852	102901052	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3752.0	NM_010277	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	3.63	8.8	3.42	3.62	8.59	9.41	2.66	2.89	5.7	12.05	4.02	4.07
Merged-chr1-152688127-1	chr1	152688027	152688227	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62424.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	2.83	4.28	4.56	2.82	5.32	9.41	7.31	8.72	2.36	2.51	7.54	4.7
Merged-chr14-103048907-1	chr14	103048807	103049007	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1895.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	5.65	3.02	2.28	7.64	10.64	19.13	5.31	5.83	4.13	5.52	0.5	3.76
Merged-chr7-81859697-3	chr7	81859607	81859807	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	706.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.27	5.03	5.7	9.25	14.32	9.09	12.29	10.26	8.65	4.02	14.07	5.64
Merged-chr11-96822817-2	chr11	96822706	96822906	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	1125.0	NM_001361682	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	19.79	10.82	13.69	4.02	1.64	7.53	0.66	2.83	10.23	16.07	11.56	6.27
Merged-chr8-40608573-1	chr8	40608473	40608673	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 2 of 13)	Lx8|LINE|L1	26219.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.81	0.0	0.57	0.0	0.0	0.63	0.0	1.18	10.03	3.01	10.55	5.95
Merged-chr10-31519637-1	chr10	31519537	31519737	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 2 of 5)	ORR1E|LTR|ERVL-MaLR	-73679.0	NM_001359366	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	8.08	3.02	5.7	7.24	6.95	1.25	6.98	8.07	1.97	5.02	1.51	0.31
Merged-chr19-36410245-1	chr19	36410145	36410345	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029508, intron 1 of 8)	CpG	31178.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	2.83	12.32	9.13	5.23	9.41	6.27	6.31	7.65	9.24	11.55	11.56	5.01
Merged-chr3-45240817-1	chr3	45240717	45240917	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137443.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	1.01	1.14	0.0	2.05	9.41	0.66	5.97	1.18	1.0	1.0	0.31
Merged-chr13-23889796-1	chr13	23889696	23889896	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121611, intron 11 of 12)	intron (NR_121611, intron 11 of 12)	19523.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	4.44	2.52	2.85	0.8	3.27	9.09	5.31	5.52	0.39	1.0	4.02	0.31
Merged-chr13-19854235-1	chr13	19854135	19854335	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29978.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.42	3.27	3.42	7.24	7.36	5.96	2.99	5.05	2.16	6.03	1.51	3.45
Merged-chr15-62032301-1	chr15	62032201	62032401	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5685.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.85	1.01	10.84	3.22	6.14	7.84	0.66	10.49	5.9	8.03	8.04	2.82
Merged-chr17-67381749-1	chr17	67381649	67381849	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-27258.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.83	4.02	3.42	2.82	6.55	12.86	3.32	3.14	5.7	17.57	13.57	3.13
Merged-chr4-135495180-1	chr4	135495080	135495280	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-211.0	NM_001361484	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	4.04	5.03	3.99	4.02	5.32	3.45	5.31	7.29	5.31	6.03	13.06	4.07
Merged-chr12-69532742-1	chr12	69532642	69532842	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50286.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.81	1.51	0.0	1.61	0.0	0.0	0.0	0.34	8.06	4.02	8.54	10.34
Merged-chr10-8758107-1	chr10	8758007	8758207	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127963.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.42	1.51	6.85	0.0	5.73	9.72	1.99	6.5	2.75	2.01	1.0	2.19
Merged-chr9-95689169-1	chr9	95689069	95689269	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	51541.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	1.62	2.52	2.28	0.0	1.23	2.51	5.31	6.64	3.74	5.52	5.02	2.82
Merged-chr6-134366167-1	chr6	134366067	134366267	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-30162.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.23	7.29	7.42	4.02	9.82	6.9	1.66	7.99	1.57	1.51	4.52	0.63
Merged-chr8-25109440-1	chr8	25109340	25109540	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_155282, exon 2 of 2)	non-coding (NR_155282, exon 2 of 2)	7261.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	7.27	6.04	6.85	6.44	2.45	6.27	4.98	7.35	12.78	7.53	6.03	5.95
Merged-chr13-80953125-2	chr13	80953048	80953248	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10926.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.48	4.53	6.85	13.67	11.86	7.53	16.94	13.57	8.65	1.51	11.05	2.82
Merged-chrY-90803612-1	chrY	90803512	90803712	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	18170.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	4.44	1.26	2.28	0.0	2.45	0.94	1.66	2.3	17.7	16.57	9.55	5.95
Merged-chr5-102057229-1	chr5	102057129	102057329	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12692.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.44	3.02	6.85	7.24	8.59	5.64	8.97	8.5	7.87	2.51	12.56	2.51
Merged-chr4-141156458-2	chr4	141156351	141156551	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	RSINE1|SINE|B4	8529.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	5.25	3.02	6.85	4.02	4.91	8.78	3.65	9.9	6.88	12.55	12.06	6.89
Merged-chr4-155519494-2	chr4	155519386	155519586	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160016, intron 2 of 11)	intron (NM_001160016, intron 2 of 11)	28125.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.4	4.53	2.28	4.42	9.0	3.14	3.99	6.5	7.08	6.53	17.08	10.02
Merged-chr6-73697270-1	chr6	73697170	73697370	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-226249.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.4	3.27	1.71	0.8	2.05	2.2	5.98	2.5	3.34	0.0	0.0	0.63
Merged-chr1-134106949-2	chr1	134106850	134107050	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4292.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	5.25	2.77	0.57	3.22	12.27	6.59	0.0	8.33	6.88	6.03	8.54	6.58
Merged-chr15-67092459-1	chr15	67092359	67092559	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84423.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.62	2.01	3.42	8.04	6.55	1.25	5.31	9.22	3.54	0.5	7.54	2.82
Merged-chr1-9991981-1	chr1	9991881	9992081	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145692, intron 5 of 8)	intron (NM_145692, intron 5 of 8)	17155.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	3.63	4.53	4.56	4.83	3.27	3.14	5.65	5.52	1.18	3.01	5.53	9.08
Merged-chr12-99741813-1	chr12	99741713	99741913	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	Lx9|LINE|L1	-113839.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	6.46	4.02	9.13	8.45	1.23	2.2	1.99	2.61	10.82	1.51	11.56	4.07
Merged-chr3-87243844-2	chr3	87243738	87243938	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19686.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	6.46	5.03	1.71	6.84	2.45	1.25	1.33	3.42	15.14	2.01	6.03	11.59
Merged-chr6-148722426-1	chr6	148722326	148722526	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44426.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	2.42	4.28	2.85	9.25	3.27	13.17	6.98	6.34	5.31	2.01	8.54	4.39
Merged-chr10-77522662-2	chr10	77522537	77522737	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6824.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	6.46	6.54	11.98	12.07	7.36	8.15	8.3	12.03	12.59	10.54	11.05	5.95
Merged-chr6-108186277-1	chr6	108186177	108186377	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145937)	promoter-TSS (NM_145937)	-694.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	2.42	11.07	7.42	13.67	4.91	7.84	3.99	2.94	9.64	4.52	3.52	4.7
Merged-chr9-14174156-1	chr9	14174056	14174256	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102145.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	2.83	4.28	4.56	4.83	2.86	1.57	5.98	4.65	1.57	3.51	3.52	3.13
Merged-chr9-77746564-1	chr9	77746464	77746664	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7971.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	6.06	5.03	2.28	1.61	2.45	2.2	6.98	5.44	0.98	4.52	1.0	2.19
Merged-chr7-6729621-1	chr7	6729521	6729721	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290994)	promoter-TSS (NM_001290994)	798.0	NM_008817	18616.0	Mm.389800	NM_008817	ENSMUSG00000002265	Peg3	AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287	paternally expressed 3	protein-coding	8.08	3.52	5.13	2.01	6.55	9.09	6.98	5.97	2.95	3.01	6.53	0.31
Merged-chr11-116096567-3	chr11	116096457	116096657	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-9562.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	10.9	5.03	13.69	14.48	16.36	7.53	8.64	11.78	18.49	10.54	10.55	22.24
Merged-chr1-105795868-3	chr1	105795770	105795970	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	15147.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	10.9	6.79	6.28	20.91	9.41	8.47	6.98	18.53	25.57	10.04	13.06	9.71
Merged-chr10-60389684-3	chr10	60389575	60389775	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-10051.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	6.86	7.55	11.98	13.27	22.09	15.05	27.9	28.63	7.47	6.03	20.1	10.65
Merged-chr1-155391691-3	chr1	155391599	155391799	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	MTEa|LTR|ERVL-MaLR	25745.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	12.52	5.53	12.55	11.26	10.64	5.02	5.65	10.63	7.28	3.01	15.58	7.21
Merged-chr3-144982858-3	chr3	144982752	144982952	+	738.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-7807.0	NM_207208	99663.0	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	9.29	1.76	6.85	10.05	9.0	6.9	12.29	18.22	10.62	10.54	20.1	11.28
Merged-chr5-53872078-2	chr5	53871953	53872153	+	738.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144517, intron 13 of 20)	intron (NM_144517, intron 13 of 20)	62426.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	4.04	1.51	3.99	3.62	5.73	6.27	3.99	8.86	4.72	5.02	10.05	2.19
Merged-chr4-138447628-3	chr4	138447521	138447721	+	738.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7527.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	3.63	3.52	10.84	7.24	10.23	8.15	3.32	5.97	15.93	17.07	15.58	8.77
Merged-chr9-111571885-2	chr9	111571780	111571980	+	738.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016853, intron 10 of 10)	ORR1E|LTR|ERVL-MaLR	118468.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	9.29	4.02	13.69	16.49	15.96	7.53	5.65	9.84	6.49	6.53	8.04	4.07
Merged-chr2-5710110-2	chr2	5710014	5710214	+	738.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	4648.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	8.48	5.53	9.7	10.05	16.36	11.92	8.3	7.77	9.24	4.52	4.52	1.88
Merged-chr18-38434204-2	chr18	38434107	38434307	+	738.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	RMER6A|LTR|ERVK	15300.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.04	3.77	2.28	3.62	11.86	4.7	1.33	10.15	7.28	10.04	16.08	8.77
Merged-chr14-100937619-2	chr14	100937507	100937707	+	738.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	262462.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	5.25	5.79	9.13	9.65	15.14	9.72	11.29	10.74	7.08	10.04	11.05	13.16
Merged-chr11-21241481-3	chr11	21241377	21241577	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	2445.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	11.31	10.82	3.99	7.64	9.41	6.59	1.99	6.95	20.26	9.04	15.07	4.39
Merged-chr8-94167457-3	chr8	94167371	94167571	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-5147.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	10.5	7.8	7.99	8.04	7.36	6.27	2.99	6.59	16.92	9.54	8.54	10.02
Merged-chr2-37702970-2	chr2	37702869	37703069	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-14685.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	5.65	10.56	10.27	10.05	12.68	6.59	13.62	7.57	10.03	8.54	6.03	4.7
Merged-chr18-24039596-3	chr18	24039496	24039696	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18783.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	7.67	9.06	23.39	7.24	7.36	14.11	7.64	10.77	9.64	10.54	13.57	9.08
Merged-chr5-92470904-1	chr5	92470804	92471004	+	738.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	B4A|SINE|B4	12347.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	6.06	3.52	9.13	4.83	13.09	9.72	8.3	6.76	6.1	9.54	15.58	8.46
Merged-chr10-62594126-2	chr10	62593997	62594197	+	738.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019553, exon 4 of 15)	exon (NM_019553, exon 4 of 15)	8201.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	4.04	11.07	10.84	7.64	5.32	5.64	1.99	3.11	11.8	11.55	8.04	9.08
Merged-chr4-46535343-2	chr4	46535250	46535450	+	738.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151695)	promoter-TSS (NR_151695)	-551.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	7.27	4.02	10.27	4.83	5.32	6.59	9.63	12.7	8.85	9.04	10.05	10.34
Merged-chr13-3897074-3	chr13	3896971	3897171	+	738.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-3490.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	3.63	11.07	6.85	9.65	2.86	9.09	12.62	11.52	7.47	10.04	3.01	4.7
Merged-chr1-165780599-3	chr1	165780497	165780697	+	738.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8084.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	11.71	8.55	9.13	8.85	10.64	12.54	6.31	5.8	13.57	11.55	7.03	5.64
Merged-chr12-73967832-2	chr12	73967735	73967935	+	738.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	3305.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	14.54	4.78	6.28	9.25	20.86	19.76	6.64	7.09	10.82	11.55	3.52	2.82
Merged-chr9-124023216-2	chr9	124023112	124023312	+	738.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	1241.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.86	7.04	7.42	10.05	10.64	22.26	8.3	11.92	2.36	1.0	2.51	0.0
Merged-chr1-35839612-2	chr1	35839508	35839708	+	738.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-228792.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	12.11	7.29	10.84	5.23	3.27	4.39	5.31	4.43	6.1	9.54	8.04	5.33
Merged-chr19-29563614-1	chr19	29563514	29563714	+	738.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081319, intron 4 of 25)	intron (NM_001081319, intron 4 of 25)	41332.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	3.23	4.53	3.99	4.42	6.55	8.15	6.64	7.85	7.47	4.52	3.52	3.13
Merged-chr12-41288771-2	chr12	41288664	41288864	+	738.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	197293.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.04	3.27	9.13	4.83	8.18	12.23	4.98	10.93	16.92	7.03	11.56	3.76
Merged-chr10-60368073-2	chr10	60367946	60368146	+	738.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159572, intron 5 of 6)	intron (NM_001159572, intron 5 of 6)	21195.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.46	3.52	5.7	4.83	4.09	5.64	6.31	10.54	10.23	3.51	10.05	6.27
Merged-chr6-127143344-3	chr6	127143228	127143428	+	738.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6061.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	16.96	41.25	30.8	6.03	9.0	14.42	8.3	3.45	7.87	4.02	9.55	5.64
Merged-chr5-52133003-3	chr5	52132894	52133094	+	738.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3023.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	8.48	10.82	14.83	14.08	10.64	13.8	7.97	17.8	6.88	7.03	9.55	8.46
Merged-chr6-142571435-2	chr6	142571313	142571513	+	738.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008428, exon 1 of 3)	5' UTR (NM_008428, exon 1 of 3)	201.0	NM_001330363	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	4.85	7.04	2.85	6.84	7.77	8.15	10.63	9.59	4.52	6.03	6.03	5.95
Merged-chr18-46360115-1	chr18	46360015	46360215	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48187.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	1.62	2.77	5.13	1.61	8.18	7.21	4.65	7.4	2.75	4.02	3.01	7.52
Merged-chr10-75744218-3	chr10	75744108	75744308	+	738.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 10 of 36)	intron (NM_172549, intron 10 of 36)	20149.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	2.83	4.28	9.7	13.67	6.95	10.98	5.98	6.73	17.31	6.53	9.04	10.65
Merged-chr12-77781536-2	chr12	77781426	77781626	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	371385.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.06	4.53	3.99	3.22	9.82	8.47	7.64	9.17	9.44	9.54	8.54	7.21
Merged-chr10-94518351-1	chr10	94518251	94518451	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	RLTR11A2|LTR|ERVK	3494.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.46	6.79	3.42	4.02	8.59	7.53	9.97	15.9	6.29	9.54	9.04	9.08
Merged-chr3-98015993-3	chr3	98015887	98016087	+	738.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2449.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	16.96	10.06	7.42	10.86	9.41	10.35	8.64	14.55	11.41	8.03	11.56	7.21
Merged-chr10-118867352-1	chr10	118867252	118867452	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	1551.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.27	9.06	4.56	8.04	7.77	6.9	7.97	5.78	7.87	15.57	13.57	5.33
Merged-chr2-6209376-1	chr2	6209276	6209476	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024208, intron 1 of 4)	intron (NM_024208, intron 1 of 4)	3618.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	2.42	2.01	6.85	3.22	7.36	4.39	7.31	7.71	1.57	2.01	4.02	1.57
Merged-chr13-60054192-1	chr13	60054092	60054292	+	738.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_046142, intron 1 of 2)	intron (NR_046142, intron 1 of 2)	24481.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	2.02	8.3	10.27	16.49	0.82	0.0	0.33	0.0	0.0	1.0	0.0	0.0
Merged-chr11-107595049-2	chr11	107594950	107595150	+	738.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-42672.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	3.63	7.04	10.27	7.24	4.5	8.15	1.99	3.53	20.26	12.55	12.56	4.7
Merged-chr7-104369239-2	chr7	104369145	104369345	+	738.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-10599.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	8.08	10.06	10.27	1.21	4.5	9.41	6.98	13.37	6.69	10.54	3.01	3.76
Merged-chr2-167696554-2	chr2	167696428	167696628	+	738.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	5351.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	13.73	5.28	13.69	5.63	10.64	5.96	2.66	2.64	13.57	8.03	3.01	4.07
Merged-chr13-28601927-2	chr13	28601829	28602029	+	738.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	108944.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	5.65	2.26	7.99	10.46	7.36	8.15	8.64	17.36	4.92	0.5	14.57	9.4
Merged-chr11-68966096-3	chr11	68965978	68966178	+	738.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2053.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	9.29	11.57	3.42	6.44	7.77	9.72	1.33	10.51	17.7	11.05	2.51	7.83
Merged-chr9-48816986-2	chr9	48816891	48817091	+	738.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	MIR3|SINE|MIR	18954.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	1.62	2.01	1.14	4.02	3.68	4.08	2.66	4.96	15.74	12.05	7.03	8.46
Merged-chr16-11177560-3	chr16	11177453	11177653	+	738.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151506)	promoter-TSS (NR_151506)	-623.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	8.48	11.32	10.84	6.84	12.27	8.78	5.65	7.49	9.64	23.1	25.12	8.77
Merged-chr2-160304187-3	chr2	160304075	160304275	+	738.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23319.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	11.31	5.03	15.97	4.83	23.32	13.17	10.96	20.22	10.03	7.53	20.1	5.01
Merged-chr11-86956583-2	chr11	86956478	86956678	+	738.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37184.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.46	6.29	10.84	4.42	9.0	9.72	7.64	10.77	10.23	12.55	13.57	17.86
Merged-chr1-178330732-2	chr1	178330590	178330790	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016805, exon 11 of 14)	exon (NM_016805, exon 11 of 14)	7125.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	4.44	5.28	8.56	6.44	7.36	4.08	2.99	6.84	7.47	10.04	10.55	4.39
Merged-chr6-120024805-2	chr6	120024701	120024901	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198703, intron 1 of 27)	intron (NM_198703, intron 1 of 27)	9510.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	8.48	8.55	6.28	10.46	7.77	12.54	1.33	8.5	8.06	5.02	8.04	7.83
Merged-chr12-73846812-1	chr12	73846712	73846912	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54512.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.81	7.04	4.56	4.83	6.95	11.29	2.33	6.81	4.72	9.04	6.53	3.76
Merged-chr2-119167044-1	chr2	119166944	119167144	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-744.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	5.25	2.52	0.0	2.41	5.32	5.64	1.66	8.16	8.85	1.51	2.01	2.82
Merged-chr4-128806201-2	chr4	128806101	128806301	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-89.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.06	6.79	3.42	10.46	8.18	10.03	8.64	4.6	13.18	7.03	11.56	1.57
Merged-chr2-46149971-2	chr2	46149872	46150072	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	453367.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.83	4.28	6.85	9.65	9.41	7.21	8.97	9.5	3.74	13.56	10.05	5.64
Merged-chr10-14020443-1	chr10	14020343	14020543	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	54064.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.44	3.27	6.85	15.28	3.27	6.9	5.98	6.42	3.74	3.01	7.54	3.45
Merged-chr12-24697809-2	chr12	24697705	24697905	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10449.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	7.67	7.29	14.26	8.04	5.73	13.48	7.64	8.78	3.34	2.51	3.52	3.13
Merged-chr14-21847788-3	chr14	21847639	21847839	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026965, exon 6 of 7)	exon (NM_026965, exon 6 of 7)	161.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	10.09	9.06	2.85	16.49	7.77	10.66	4.98	6.59	7.08	3.01	5.02	3.76
Merged-chr7-112103097-2	chr7	112103003	112103203	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133758, intron 22 of 27)	intron (NM_133758, intron 22 of 27)	55593.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	7.27	2.77	3.42	1.21	2.05	6.27	4.98	10.46	5.7	6.03	14.07	9.4
Merged-chr8-22945035-2	chr8	22944971	22945171	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29765.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	6.86	4.53	3.42	8.85	8.18	13.17	3.99	6.98	9.83	14.56	7.54	4.07
Merged-chr6-90435349-2	chr6	90435244	90435444	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6864.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	16.15	5.79	16.54	1.61	5.32	0.94	3.32	5.44	5.7	5.52	7.54	4.07
Merged-chr1-36836612-2	chr1	36836503	36836703	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 8 of 40)	intron (NM_018872, intron 8 of 40)	57619.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	6.46	4.53	14.26	10.46	5.73	2.82	3.65	8.41	3.34	4.52	1.51	0.63
Merged-chr2-84454213-2	chr2	84454123	84454323	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	19951.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	8.48	7.55	2.28	3.22	4.5	13.17	4.65	10.01	8.85	5.52	2.01	4.39
Merged-chr10-42679859-2	chr10	42679785	42679985	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	969.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	4.04	4.53	4.56	10.86	5.32	5.96	4.65	11.78	8.85	6.03	7.03	10.96
Merged-chr10-121297542-3	chr10	121297462	121297662	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 6 of 12)	intron (NM_001361015, intron 6 of 12)	13834.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	8.88	4.02	3.99	8.85	9.82	14.74	13.62	17.94	3.15	2.01	8.54	4.07
Merged-chr7-64327162-3	chr7	64327070	64327270	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172742, intron 13 of 15)	intron (NM_172742, intron 13 of 15)	39500.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	2.42	7.04	6.28	9.25	6.95	17.56	7.31	15.0	14.95	9.04	24.12	10.96
Merged-chr1-171735118-3	chr1	171735006	171735206	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32026.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	11.71	15.59	10.84	7.64	6.95	18.5	9.97	2.13	17.9	18.08	18.59	5.64
Merged-chr17-66107057-3	chr17	66106968	66107168	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4478.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	6.06	7.8	7.42	2.01	8.59	9.09	10.63	9.93	13.18	9.04	7.54	6.58
Merged-chr18-57621478-3	chr18	57621385	57621585	+	738.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	17100.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	11.31	4.28	12.55	7.24	16.77	10.66	4.98	14.97	15.93	19.58	12.06	10.02
Merged-chr2-160618823-3	chr2	160618705	160618905	+	738.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-27092.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.44	1.76	10.84	4.42	10.64	15.68	12.95	17.19	10.42	9.04	13.06	9.71
Merged-chr18-56823132-1	chr18	56823032	56823232	+	738.400024	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	102416.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	19.79	7.04	15.4	13.67	6.55	2.2	3.65	10.35	5.9	1.51	5.02	2.51
Merged-chr9-21436321-3	chr9	21436249	21436449	+	738.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	11441.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	5.65	4.28	5.13	9.65	11.05	10.66	8.64	7.12	8.65	8.03	10.55	9.08
Merged-chr3-8929974-3	chr3	8929859	8930059	+	738.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-6102.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	6.06	8.3	7.99	19.31	13.91	14.74	15.61	12.39	11.6	8.54	14.57	8.46
Merged-chr5-31940869-2	chr5	31940770	31940970	+	738.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-195602.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.46	3.27	10.84	13.27	13.5	6.59	8.64	8.61	7.87	0.0	5.02	6.27
Merged-chr1-36869816-2	chr1	36869710	36869910	+	738.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	69717.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	7.27	3.27	10.27	16.09	10.23	9.72	5.65	7.79	11.8	10.54	1.51	6.27
Merged-chr13-107700431-3	chr13	107700318	107700518	+	738.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13021.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	9.69	10.56	7.99	8.04	16.77	9.72	6.64	16.21	11.01	16.07	21.61	9.71
Merged-chr4-129791152-2	chr4	129791065	129791265	+	738.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29314.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.44	6.79	15.4	6.84	12.27	7.21	4.98	9.95	6.29	3.51	4.52	4.07
Merged-chr6-134544318-2	chr6	134544210	134544410	+	738.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	22603.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	7.27	5.28	0.0	7.24	7.77	11.6	4.98	11.8	7.08	6.03	12.56	11.28
Merged-chr18-56459193-3	chr18	56459052	56459252	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	27020.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.04	5.53	1.14	2.01	11.45	8.47	6.31	9.03	4.92	1.51	4.02	5.95
Merged-chr1-176862363-1	chr1	176862263	176862463	+	738.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357390, intron 9 of 18)	intron (NM_001357390, intron 9 of 18)	-26230.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	4.04	3.52	3.99	4.83	5.73	12.23	5.98	6.08	11.21	6.03	5.02	0.31
Merged-chrX-36820403-3	chrX	36820314	36820514	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3214.0	NR_131979	69591.0	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	3.63	3.77	10.27	12.47	11.86	10.03	3.99	9.39	8.46	6.03	16.58	4.07
Merged-chr5-98185469-3	chr5	98185385	98185585	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029947, exon 4 of 4)	exon (NM_029947, exon 4 of 4)	499.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	10.9	5.79	7.99	10.46	16.36	11.29	15.61	13.79	7.47	14.56	11.05	5.95
Merged-chr2-165997767-3	chr2	165997668	165997868	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	5131.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	14.54	7.8	10.27	10.46	11.45	12.86	12.29	11.97	11.21	12.05	10.55	11.28
Merged-chrX-157644496-1	chrX	157644396	157644596	+	738.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-45781.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	3.23	0.5	6.85	2.01	8.18	5.96	7.64	8.1	6.88	11.05	5.02	5.95
Merged-chr12-3862393-1	chr12	3862293	3862493	+	738.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045884)	promoter-TSS (NR_045884)	-149.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.04	6.54	6.85	3.22	7.36	5.64	5.98	8.8	6.29	6.53	12.56	3.45
Merged-chr9-32493835-3	chr9	32493740	32493940	+	738.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	47612.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.25	8.05	18.83	11.66	11.45	7.53	10.96	11.86	9.24	2.01	8.04	8.46
Merged-chr7-112405203-2	chr7	112405091	112405291	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027587, intron 7 of 9)	ORR1E|LTR|ERVL-MaLR	-22515.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	5.65	6.04	8.56	9.65	4.5	7.84	5.98	11.72	1.57	3.51	11.56	1.57
Merged-chr6-72093386-2	chr6	72093302	72093502	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4206.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	10.9	3.02	5.7	8.45	9.0	6.27	2.33	9.9	4.13	2.51	6.03	5.01
Merged-chr16-78215906-2	chr16	78215830	78216030	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39524.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.06	9.56	9.7	12.07	7.36	10.98	4.98	9.06	15.34	10.54	5.02	4.7
Merged-chr18-37806288-2	chr18	37806198	37806398	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033581)	promoter-TSS (NM_033581)	-112.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	12.11	6.79	0.0	8.45	11.45	7.53	3.65	10.04	5.7	9.04	6.53	7.52
Merged-chr11-75324620-3	chr11	75324528	75324728	+	738.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026653, intron 5 of 16)	Lx8|LINE|L1	23755.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	13.73	11.32	6.85	5.63	7.77	11.92	4.98	5.75	16.72	10.54	14.57	13.47
Merged-chr13-67516199-1	chr13	67516099	67516299	+	738.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133228, exon 4 of 4)	3' UTR (NM_133228, exon 4 of 4)	10032.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	0.81	1.01	0.0	0.0	0.0	0.63	0.33	0.0	10.62	13.56	34.17	15.35
Merged-chr5-76973701-3	chr5	76973590	76973790	+	738.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	7.27	3.52	6.85	11.26	15.14	10.35	3.32	6.34	16.33	15.06	14.07	10.02
Merged-chr8-4105801-1	chr8	4105701	4105901	+	738.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026956)	promoter-TSS (NM_026956)	-37.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	4.44	0.75	5.7	8.04	9.41	8.47	10.63	6.31	1.38	1.51	1.0	1.25
Merged-chr1-192087252-3	chr1	192087150	192087350	+	738.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	L2|LINE|L2	5349.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	11.31	30.94	30.23	13.67	4.91	15.05	4.98	4.79	11.8	6.53	11.05	10.34
Merged-chr13-111894872-1	chr13	111894772	111894972	+	738.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26936.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.62	6.79	0.0	3.22	9.82	6.9	12.62	7.49	1.18	3.51	1.51	6.27
Merged-chr13-70643870-2	chr13	70643733	70643933	+	738.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6199.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	6.06	3.77	3.99	11.26	7.36	9.09	5.65	10.37	8.26	17.57	7.03	7.52
Merged-chr18-23900255-2	chr18	23900140	23900340	+	738.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-54448.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.44	4.78	4.56	4.02	9.0	8.78	4.32	7.91	7.87	1.0	4.52	7.83
Merged-chr17-50666554-2	chr17	50666412	50666612	+	738.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 4 of 5)	MTC|LTR|ERVL-MaLR	-32169.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.25	3.02	6.28	6.44	6.55	7.53	10.3	5.78	6.49	5.02	5.02	5.95
Merged-chr6-145289210-2	chr6	145289108	145289308	+	738.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38656.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	2.02	1.26	5.7	1.61	8.18	2.82	8.97	13.07	9.64	2.51	14.57	5.95
Merged-chr14-73238618-3	chr14	73238491	73238691	+	738.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175116, exon 1 of 1)	5' UTR (NM_175116, exon 1 of 1)	700.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	5.25	8.05	9.13	4.02	8.59	2.82	10.3	12.73	9.64	14.56	13.57	8.14
Merged-chr7-127229037-2	chr7	127228923	127229123	+	738.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4038.0	NM_001360912	233887.0	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	12.11	6.79	9.7	10.05	9.82	14.42	8.64	8.07	6.88	11.05	4.02	7.52
Merged-chr12-104103587-2	chr12	104103498	104103698	+	738.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172953, intron 3 of 4)	intron (NM_172953, intron 3 of 4)	2485.0	NM_172953	268591.0	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	4.04	8.3	7.99	0.8	0.0	0.0	1.99	0.73	15.54	13.05	36.18	13.16
Merged-chr1-107528482-3	chr1	107528382	107528582	+	738.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198028)	promoter-TSS (NM_198028)	-521.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	11.71	5.03	11.98	9.65	6.95	6.59	11.96	17.72	13.18	15.06	10.05	5.64
Merged-chr4-151977944-3	chr4	151977833	151978033	+	738.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172704, intron 11 of 15)	intron (NM_172704, intron 11 of 15)	11053.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	7.67	7.04	7.42	9.25	6.14	6.59	5.31	8.72	10.42	7.03	14.07	9.08
Merged-chr18-46335171-3	chr18	46334975	46335175	+	738.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23147.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	2.83	2.52	6.28	3.62	3.68	3.14	0.0	4.99	6.29	5.02	3.52	0.94
Merged-chr13-23728329-2	chr13	23728234	23728434	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10473.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	2.83	5.53	11.41	14.08	4.91	5.02	9.3	8.75	6.1	10.04	4.02	2.19
Merged-chr11-76578064-2	chr11	76577964	76578164	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198894)	promoter-TSS (NM_198894)	-325.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	11.31	6.04	2.28	1.61	5.32	11.92	1.66	7.12	10.23	17.07	8.54	7.83
Merged-chr13-109759953-3	chr13	109759847	109760047	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 5 of 16)	intron (NM_011056, intron 5 of 16)	-143862.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	11.71	5.53	9.13	7.64	15.96	8.15	20.26	20.58	9.64	10.04	12.56	11.59
Merged-chr7-4705282-1	chr7	4705182	4705382	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001168572, exon 10 of 10)	3' UTR (NM_001168572, exon 10 of 10)	14354.0	NM_001168572	381979.0	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	5.65	2.52	3.99	6.03	7.36	4.08	5.98	7.15	5.51	8.03	5.53	3.13
Merged-chr10-85928581-2	chr10	85928466	85928666	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163614)	promoter-TSS (NM_001163614)	75.0	NM_001163614	67341.0	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	9.69	3.77	0.57	4.83	10.64	7.21	2.99	5.05	8.46	5.52	13.06	3.76
Merged-chr4-111350956-1	chr4	111350856	111351056	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284190, intron 6 of 12)	intron (NM_001284190, intron 6 of 12)	-64050.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.81	5.03	3.42	11.66	3.27	5.02	2.33	9.79	3.34	3.51	3.01	5.01
Merged-chr13-40940256-1	chr13	40940156	40940356	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22622.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	2.01	1.71	1.21	4.5	6.27	5.65	8.89	0.98	0.0	1.0	3.13
Merged-chr6-136547239-1	chr6	136547139	136547339	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	28388.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.04	1.76	1.14	1.61	2.05	8.15	3.99	4.93	0.0	0.0	0.0	0.0
Merged-chr1-167284880-2	chr1	167284789	167284989	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_030724, exon 1 of 7)	5' UTR (NM_030724, exon 1 of 7)	238.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	14.13	8.55	7.42	10.05	6.95	9.72	5.65	5.27	3.34	4.02	9.04	7.52
Merged-chr16-50841875-2	chr16	50841784	50841984	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58475.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	5.65	4.02	5.7	4.02	4.91	9.09	2.66	10.09	9.64	14.56	12.06	3.45
Merged-chr10-117078475-3	chr10	117078390	117078590	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 7 of 9)	ORR1C1|LTR|ERVL-MaLR	-14638.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	11.71	2.52	3.42	12.07	5.73	8.47	1.66	4.6	20.26	6.53	16.08	5.33
Merged-chr13-13549974-1	chr13	13549874	13550074	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR26B_MM|LTR|ERVK	-40435.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.81	2.52	0.0	0.8	1.64	0.0	6.98	2.13	0.98	2.01	0.0	1.25
Merged-chr3-82995545-2	chr3	82995445	82995645	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12179.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	8.88	5.03	15.4	3.62	2.86	5.02	6.64	11.86	2.36	4.02	5.53	0.63
Merged-chr7-84665570-1	chr7	84665470	84665670	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	13826.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	4.85	3.52	5.7	1.61	10.64	16.93	13.29	4.12	5.11	4.02	1.51	6.58
Merged-chr4-19741154-2	chr4	19741050	19741250	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-21264.0	NR_151541	102632246.0		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	2.42	1.76	2.28	8.45	4.91	10.03	14.28	10.54	6.49	8.54	12.06	11.9
Merged-chr13-9082771-1	chr13	9082671	9082871	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11110.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	2.83	3.02	2.28	4.02	4.91	3.14	7.64	6.87	6.49	4.02	1.0	3.76
Merged-chr1-77356202-1	chr1	77356102	77356302	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140566.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	6.06	2.26	5.7	7.24	5.73	2.82	12.62	4.71	5.7	4.02	13.06	7.83
Merged-chr5-142904902-1	chr5	142904802	142905002	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007393, intron 3 of 5)	intron (NM_007393, intron 3 of 5)	1852.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.63	7.29	4.56	3.22	4.91	5.02	1.66	0.93	10.03	12.55	3.01	7.52
Merged-chr3-31107891-1	chr3	31107791	31107991	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	12833.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.23	1.26	2.28	0.0	2.45	8.15	8.97	6.84	3.54	11.55	10.05	8.77
Merged-chr2-52941079-1	chr2	52940979	52941179	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83211.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.63	4.02	7.99	2.82	8.18	9.09	5.31	8.19	6.88	4.02	6.53	1.88
Merged-chr16-57385410-1	chr16	57385310	57385510	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	32133.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.88	2.77	13.69	3.62	9.0	3.14	9.97	5.1	3.93	8.03	14.07	2.19
Merged-chr13-91093355-1	chr13	91093255	91093455	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130632.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	4.85	2.52	0.0	6.44	16.36	4.39	7.97	7.32	7.47	1.51	11.05	5.64
Merged-chr1-179232559-1	chr1	179232459	179232659	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285482.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	8.48	6.04	10.84	10.86	4.91	1.57	1.33	2.19	4.52	4.02	2.01	4.07
Merged-chr10-41978574-1	chr10	41978474	41978674	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 6 of 17)	intron (NM_001034858, intron 6 of 17)	39808.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	7.27	2.01	0.0	1.61	0.82	6.59	5.65	9.98	3.34	7.03	4.02	2.82
Merged-chr7-4597178-1	chr7	4597078	4597278	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	6863.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	5.25	5.28	18.25	15.28	3.27	4.08	1.33	5.92	6.49	8.03	13.57	5.01
Merged-chr8-104395539-1	chr8	104395439	104395639	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_153582, exon 1 of 4)	exon (NM_153582, exon 1 of 4)	268.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	8.48	5.53	9.7	11.66	10.64	10.03	9.63	8.75	10.62	11.55	9.04	8.77
Merged-chrX-7763378-1	chrX	7763278	7763478	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001271491)	promoter-TSS (NM_001271491)	-565.0	NM_001105197	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	2.42	9.31	14.83	8.45	7.77	13.48	8.64	3.25	6.49	1.51	8.04	3.13
Merged-chr7-35099695-1	chr7	35099595	35099795	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19598.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.23	4.02	2.85	6.03	2.86	2.51	8.97	9.03	7.47	7.03	3.01	4.7
Merged-chr7-100879820-1	chr7	100879720	100879920	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 13 of 20)	intron (NM_001081116, intron 13 of 20)	2589.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	20.19	3.27	1.71	4.02	8.18	6.27	1.66	4.82	14.95	4.52	12.56	6.89
Merged-chr7-19272960-1	chr7	19272860	19273060	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-1106.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	2.83	1.51	1.14	1.61	4.5	3.45	0.0	2.16	11.41	12.05	3.01	7.83
Merged-chr15-80012077-3	chr15	80011969	80012169	+	737.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	2739.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.85	3.02	2.28	2.01	15.14	8.15	4.65	9.62	6.69	8.03	3.52	4.7
Merged-chr10-94944870-3	chr10	94944783	94944983	+	737.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018797)	promoter-TSS (NM_018797)	-305.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	10.5	7.29	23.39	10.86	7.77	9.72	3.99	14.27	7.67	7.03	5.53	7.21
Merged-chr1-64299114-3	chr1	64298982	64299182	+	737.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177693.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	9.69	5.03	2.85	7.24	4.5	10.03	13.62	16.57	10.62	8.54	11.56	13.47
Merged-chr10-44428118-3	chr10	44428083	44428283	+	737.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30565.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.06	2.26	5.7	6.44	9.41	12.54	5.65	6.14	7.87	4.02	10.05	4.39
Merged-chr12-69454661-3	chr12	69454570	69454770	+	737.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20880.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	10.5	4.53	10.27	11.66	19.23	18.81	16.28	24.62	8.65	8.54	6.53	7.52
Merged-chr2-68843528-3	chr2	68843428	68843628	+	737.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17913.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	10.09	5.53	10.27	8.85	14.32	10.66	8.3	12.95	10.62	7.03	24.12	9.08
Merged-chr2-167230747-2	chr2	167230634	167230834	+	737.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	9803.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	8.08	3.52	6.28	10.46	14.73	11.92	5.31	6.7	17.11	10.04	11.05	4.7
Merged-chr16-55819409-4	chr16	55819282	55819482	+	737.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 3 of 12)	intron (NM_001159395, intron 3 of 12)	2756.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.63	4.53	2.85	8.85	4.91	5.64	4.65	3.98	6.69	4.52	4.52	5.33
Merged-chr14-14068076-4	chr14	14068010	14068210	+	737.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52794.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	3.63	7.04	2.85	6.03	7.77	7.53	4.98	5.33	5.9	3.01	15.58	8.77
Merged-chr9-102633154-2	chr9	102633049	102633249	+	737.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181394, intron 2 of 2)	intron (NM_181394, intron 2 of 2)	6853.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	6.86	5.53	1.14	2.41	1.64	10.03	6.98	9.2	8.85	7.53	5.02	7.21
Merged-chr8-119841206-2	chr8	119841122	119841322	+	737.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-643.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	9.29	5.28	11.98	9.25	10.64	9.41	6.98	7.99	8.26	8.03	5.02	9.08
Merged-chr2-137854744-2	chr2	137854653	137854853	+	737.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-401831.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	1.62	10.06	11.41	10.86	7.77	5.96	7.31	7.01	11.6	7.53	9.04	3.45
Merged-chr6-57514511-1	chr6	57514411	57514611	+	737.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175523, intron 5 of 6)	intron (NM_175523, intron 5 of 6)	20915.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	1.62	3.52	7.99	4.02	8.18	9.09	6.98	6.53	2.56	1.0	5.02	0.63
Merged-chr1-152618094-3	chr1	152617960	152618160	+	737.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7157.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.48	7.55	9.13	4.02	4.09	5.64	19.27	15.87	8.65	7.03	9.04	2.19
Merged-chr9-45275363-2	chr9	45275355	45275555	+	737.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B2|LTR|ERVK	-6306.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	4.04	2.77	0.0	5.23	6.55	2.82	9.63	1.4	0.98	2.01	2.01	1.57
Merged-chr2-71598576-3	chr2	71598473	71598673	+	737.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	MLT1N2|LTR|ERVL-MaLR	-51819.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	2.83	6.29	2.85	7.24	6.55	5.33	4.98	9.25	18.49	18.08	17.59	15.98
Merged-chr1-155810303-1	chr1	155810203	155810403	+	737.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	2596.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	4.04	6.79	7.42	15.69	5.73	6.27	7.64	12.03	1.77	1.0	6.03	0.94
Merged-chr2-122569642-2	chr2	122569546	122569746	+	737.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41631.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.04	8.05	5.13	6.84	7.77	10.35	5.98	7.6	11.01	16.57	12.56	10.34
Merged-chr4-152214221-2	chr4	152214124	152214324	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133348, intron 2 of 8)	intron (NM_133348, intron 2 of 8)	14380.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	7.67	8.8	2.85	0.8	3.68	7.53	3.32	5.13	3.15	6.53	7.54	5.33
Merged-chr13-5920539-2	chr13	5920448	5920648	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59059.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	13.73	9.06	16.54	20.11	3.27	4.08	3.32	11.47	16.13	4.02	10.55	3.76
Merged-chr12-80642876-2	chr12	80642791	80642991	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347409, intron 1 of 4)	B3|SINE|B2	1220.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	9.69	5.28	3.42	10.46	9.41	14.74	7.64	10.4	10.42	6.53	6.03	4.7
Merged-chr3-97158123-3	chr3	97158070	97158270	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-607.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	14.94	5.28	7.42	6.03	7.36	8.47	10.3	2.41	10.23	10.04	6.53	5.64
Merged-chr9-40806788-5	chr9	40806709	40806909	+	737.719971	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5536.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	11.71	3.77	8.56	0.8	6.14	8.47	1.99	3.25	6.1	5.02	7.03	10.34
Merged-chr17-34899631-9	chr17	34899465	34899665	+	737.685181	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001286573, exon 2 of 26)	exon (NM_001286573, exon 2 of 26)	591.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	4.85	5.53	2.85	3.22	5.32	5.33	4.65	5.13	6.49	6.53	5.53	5.33
Merged-chr7-128002279-3	chr7	128002195	128002395	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2083.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	5.25	10.06	17.11	9.65	9.41	15.68	8.64	7.43	9.24	19.58	9.55	9.08
Merged-chr1-91758863-1	chr1	91758763	91758963	+	737.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42598.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.4	1.26	6.85	0.0	7.77	9.72	0.0	6.62	13.37	4.52	6.03	3.45
Merged-chrX-151344694-3	chrX	151344587	151344787	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198105, exon 1 of 16)	exon (NM_198105, exon 1 of 16)	464.0	NM_198105	207375.0	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	3.23	8.8	9.7	12.87	6.14	6.59	10.96	6.76	2.56	9.04	14.57	7.21
Merged-chr17-87796523-3	chr17	87796419	87796619	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	1475.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	12.11	7.04	9.13	11.26	12.27	14.42	10.63	10.21	2.36	11.05	4.52	9.08
Merged-chr2-109913633-1	chr2	109913533	109913733	+	737.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-314.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	7.27	1.51	2.28	3.22	9.0	1.25	8.3	6.64	5.9	9.04	5.02	2.82
Merged-chr12-11209816-1	chr12	11209716	11209916	+	737.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019544)	promoter-TSS (NM_019544)	-868.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	2.42	0.0	0.57	0.0	6.14	5.02	5.31	9.53	0.0	0.0	2.01	0.0
Merged-chr17-87734881-3	chr17	87734795	87734995	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	62338.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	12.11	7.04	11.98	5.63	6.14	9.09	5.31	8.36	13.18	8.54	12.06	11.28
Merged-chr17-84112267-2	chr17	84112156	84112356	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	12.92	5.28	4.56	6.03	9.82	6.59	5.31	7.99	11.6	6.03	6.03	9.71
Merged-chr3-59342667-2	chr3	59342563	59342763	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162884, intron 1 of 6)	L1_Mm|LINE|L1	1593.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	6.86	5.79	2.28	6.44	11.45	7.53	7.31	7.01	10.42	5.02	12.06	2.51
Merged-chr5-64134113-2	chr5	64134027	64134227	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26133.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.44	1.51	5.7	8.85	9.0	6.59	3.65	18.34	11.8	5.02	13.06	9.4
Merged-chr14-55039118-2	chr14	55039022	55039222	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073535, intron 1 of 1)	intron (NR_073535, intron 1 of 1)	660.0	NR_073535	100151693.0	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.23	6.29	10.27	4.02	7.36	5.64	5.31	7.35	14.36	6.53	9.04	10.34
Merged-chr4-105265243-2	chr4	105265139	105265339	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107892.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.27	2.77	5.7	5.23	2.86	7.53	9.3	6.56	8.85	11.55	15.58	7.21
Merged-chr15-4821980-3	chr15	4821860	4822060	+	737.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-76777.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	4.85	5.28	15.97	9.65	7.77	6.9	9.63	15.03	12.78	17.07	12.56	7.21
Merged-chr4-148742817-3	chr4	148742723	148742923	+	737.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-61569.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	8.08	9.06	7.99	7.64	13.5	7.84	6.64	8.16	11.41	9.54	13.57	9.4
Merged-chr6-134263105-3	chr6	134263000	134263200	+	737.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007961, exon 7 of 8)	exon (NM_007961, exon 7 of 8)	-133229.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	22.61	8.3	9.7	7.64	10.64	17.87	13.95	17.36	10.23	31.63	9.04	5.95
Merged-chr17-6781416-4	chr17	6781231	6781431	+	737.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	1449.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	6.06	6.29	8.56	8.45	4.91	7.84	3.32	6.34	8.85	7.03	6.53	10.65
Merged-chr14-55577994-2	chr14	55577898	55578098	+	737.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-496.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	1.62	3.52	6.85	4.02	11.45	11.92	8.64	13.21	7.08	11.05	6.03	7.21
Merged-chr6-56756338-2	chr6	56756227	56756427	+	737.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030235, intron 15 of 15)	intron (NM_030235, intron 15 of 15)	40886.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.81	5.79	6.28	2.82	9.0	10.35	9.97	22.07	7.47	8.03	12.06	13.78
Merged-chr4-101217384-3	chr4	101217277	101217477	+	737.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	47905.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	10.5	7.04	12.55	11.66	10.64	15.68	6.98	10.88	11.01	9.04	10.05	4.39
Merged-chr5-145232727-3	chr5	145232622	145232822	+	737.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028298, intron 1 of 3)	intron (NM_028298, intron 1 of 3)	963.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	9.69	9.31	9.13	10.05	5.32	6.59	2.66	8.24	14.16	8.54	8.54	15.66
Merged-chr2-52591102-3	chr2	52591002	52591202	+	737.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-32491.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	8.08	5.79	10.84	8.85	15.55	8.47	11.29	8.97	16.72	11.05	17.59	7.83
Merged-chr1-9815958-3	chr1	9815857	9816057	+	737.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17827.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	5.65	6.29	13.69	11.26	5.32	9.72	3.32	8.27	14.36	3.51	14.57	7.52
Merged-chr5-42984968-2	chr5	42984859	42985059	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248504.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	1.62	2.01	4.56	9.25	3.68	12.23	3.32	11.97	10.82	3.51	8.04	8.46
Merged-chr16-3907901-1	chr16	3907801	3908001	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153801, intron 1 of 3)	intron (NR_153801, intron 1 of 3)	752.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	11.71	6.54	2.85	2.41	7.77	0.94	5.98	6.56	1.18	3.51	5.02	4.07
Merged-chr6-17385639-2	chr6	17385554	17385754	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep605|LTR?|LTR?	78014.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	2.83	1.01	3.42	2.41	4.5	5.96	4.98	4.12	13.57	4.02	11.05	2.82
Merged-chr9-78615847-1	chr9	78615747	78615947	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_153098, exon 1 of 33)	5' UTR (NM_153098, exon 1 of 33)	301.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	1.62	2.01	2.28	2.41	5.32	6.59	2.66	2.02	1.57	3.01	5.02	2.82
Merged-chr5-114647817-1	chr5	114647717	114647917	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10604.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	2.83	1.76	3.42	7.24	7.36	9.09	5.98	7.4	6.88	8.54	6.53	7.21
Merged-chrM-9824-1	chrM	9724	9924	+	737.5	./atac_peak_files/aj_kupffer_control_young.idr		Intergenic											930.75	16.1	17.11	13.67	0.82	1.25	0.0	0.79	0.0	0.0	0.0	0.0
Merged-chr18-4364319-1	chr18	4364219	4364419	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	10772.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	5.25	1.01	3.42	2.82	3.68	11.92	4.32	8.55	6.69	4.52	3.01	2.51
Merged-chrX-56346392-2	chrX	56346317	56346517	+	737.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359276)	promoter-TSS (NM_001359276)	20.0	NM_030139	78619.0	Mm.207345	NM_030139	ENSMUSG00000073176	Zfp449	9530049C15Rik	zinc finger protein 449	protein-coding	10.09	3.77	3.42	8.45	5.73	5.64	7.97	9.98	4.13	5.02	9.04	3.45
Merged-chr14-103857165-1	chr14	103857065	103857265	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12689.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	2.42	1.26	2.28	4.02	6.55	3.45	4.98	9.81	5.11	5.02	5.53	1.25
Merged-chr2-50943347-2	chr2	50943250	50943450	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33666.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.5	0.57	0.0	11.45	13.48	4.65	8.41	8.26	8.54	12.56	5.64
Merged-chr2-68825132-2	chr2	68824993	68825193	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-36348.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.65	8.8	3.99	10.05	13.09	8.47	5.31	6.14	7.08	7.03	3.01	4.39
Merged-chr7-101566873-2	chr7	101566768	101566968	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-6003.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.67	1.51	1.14	1.61	11.45	19.44	6.31	3.53	10.62	7.53	4.52	5.33
Merged-chr6-142525035-2	chr6	142524947	142525147	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17090.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	6.46	5.28	7.42	5.63	5.73	4.7	6.31	5.75	9.64	9.54	13.57	4.39
Merged-chr4-24851001-3	chr4	24850859	24851059	+	737.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033531, exon 1 of 10)	5' UTR (NM_001033531, exon 1 of 10)	165.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	6.86	10.82	10.27	2.41	5.73	10.98	19.6	11.72	5.9	6.03	3.52	8.14
Merged-chr2-30719112-3	chr2	30718977	30719177	+	737.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2133.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	7.67	5.28	9.7	5.63	15.55	5.64	5.65	11.19	3.93	7.53	3.52	4.07
Merged-chr4-148497883-2	chr4	148497781	148497981	+	737.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039554, intron 2 of 4)	intron (NM_001039554, intron 2 of 4)	2581.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	12.11	3.77	7.99	8.45	14.32	10.35	8.97	13.26	1.18	2.51	0.5	0.63
Merged-chr12-4599954-2	chr12	4599873	4600073	+	737.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	6965.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	10.5	8.05	11.41	10.86	5.32	5.64	8.3	14.27	3.74	5.52	8.04	6.89
Merged-chr9-95575818-2	chr9	95575712	95575912	+	737.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15995.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	11.71	7.55	1.71	2.41	7.77	14.74	7.31	7.37	10.82	17.07	14.07	6.89
Merged-chr7-44962870-2	chr7	44962761	44962961	+	737.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357670, intron 12 of 18)	intron (NM_001357670, intron 12 of 18)	11990.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	8.08	3.77	4.56	6.44	9.0	8.78	1.99	3.76	6.88	14.06	18.09	10.65
Merged-chr2-30750221-2	chr2	30750116	30750316	+	737.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	29006.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	12.11	8.55	2.28	7.24	25.36	11.29	4.65	4.23	6.69	9.54	3.01	1.88
Merged-chr14-121421686-2	chr14	121421589	121421789	+	737.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42459.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.62	2.01	0.57	4.02	10.64	13.48	9.63	18.5	10.23	13.05	13.57	8.14
Merged-chr6-120480548-2	chr6	120480441	120480641	+	737.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008359, intron 12 of 12)	intron (NM_008359, intron 12 of 12)	13266.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	2.02	4.78	9.7	12.47	13.09	12.23	8.97	14.1	14.16	6.03	9.55	3.13
Merged-chr15-27724532-2	chr15	27724434	27724634	+	737.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42992.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.46	2.52	6.85	2.82	6.95	10.35	7.31	7.4	8.26	7.53	8.04	12.22
Merged-chr15-59906665-1	chr15	59906565	59906765	+	737.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109953.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	4.04	3.52	2.28	7.24	3.27	8.47	6.64	6.03	6.1	11.55	9.04	4.07
Merged-chr9-110297264-3	chr9	110297174	110297374	+	737.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7918.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	10.09	7.55	4.56	6.44	11.45	7.53	3.99	7.85	14.55	21.59	10.05	5.95
Merged-chr1-135719660-1	chr1	135719560	135719760	+	737.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360782)	promoter-TSS (NM_001360782)	-403.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	9.29	3.02	3.99	4.83	7.36	11.6	4.98	6.79	9.64	4.02	6.53	12.22
Merged-chr7-142967670-1	chr7	142967570	142967770	+	737.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008554, intron 2 of 2)	CpG	1594.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	3.63	3.27	3.42	5.23	7.36	7.84	2.99	4.09	11.21	4.02	12.06	5.64
Merged-chr10-94687851-2	chr10	94687758	94687958	+	737.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029852)	promoter-TSS (NM_029852)	755.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	10.5	9.56	16.54	5.23	12.68	11.29	6.98	14.22	13.77	11.05	17.59	6.58
Merged-chr4-134929211-3	chr4	134929098	134929298	+	737.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1782.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	5.65	7.8	3.42	5.23	4.09	4.7	4.32	3.48	5.51	8.03	6.03	4.07
Merged-chr10-10318952-3	chr10	10318847	10319047	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153367.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.04	6.79	10.27	5.23	15.14	15.99	9.63	21.31	8.85	6.03	14.57	6.27
Merged-chr5-92603019-3	chr5	92602924	92603124	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175096)	promoter-TSS (NM_175096)	-27.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	8.88	7.29	7.99	11.26	13.91	8.15	13.62	15.2	9.44	12.55	10.55	3.45
Merged-chr13-110373028-3	chr13	110372918	110373118	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-15846.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	7.67	6.04	7.42	15.69	11.86	5.02	4.32	9.06	12.0	16.57	18.59	14.1
Merged-chr7-88357276-3	chr7	88357184	88357384	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72989.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	8.88	4.53	13.12	5.23	9.41	7.84	1.66	13.37	7.47	6.53	12.06	3.76
Merged-chr16-58501216-2	chr16	58501127	58501327	+	737.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	L1_Mus4|LINE|L1	22199.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	2.02	3.77	7.42	3.22	7.77	12.54	7.64	7.12	9.24	13.05	7.03	10.02
Merged-chr6-142785517-2	chr6	142785425	142785625	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001145390)	TTS (NM_001145390)	18941.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	13.33	2.52	6.28	4.83	6.14	7.53	4.65	12.98	15.74	3.51	11.05	2.19
Merged-chr12-117853533-2	chr12	117853438	117853638	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	9677.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	10.09	4.78	1.14	0.8	2.86	9.72	4.32	10.63	10.42	7.53	11.05	5.01
Merged-chr9-61056944-2	chr9	61056839	61057039	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39870.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.85	2.77	8.56	5.63	7.77	5.02	6.64	7.23	8.26	17.57	14.07	10.65
Merged-chr11-63897943-2	chr11	63897821	63898021	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	24363.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.44	2.77	7.99	9.65	6.55	5.64	1.66	1.71	5.51	5.52	8.04	5.95
Merged-chr13-34257128-2	chr13	34257028	34257228	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	88054.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	11.31	2.52	6.85	6.44	6.14	7.53	6.98	10.54	8.65	6.03	12.56	3.45
Merged-chr2-72853413-3	chr2	72853265	72853465	+	737.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39648.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	7.67	4.53	2.28	5.63	4.5	11.29	5.65	6.9	9.05	17.07	8.54	2.51
Merged-chr15-38074324-3	chr15	38074226	38074426	+	737.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4528.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	12.92	8.55	12.55	5.63	4.09	13.48	3.99	15.14	10.03	12.05	8.54	10.34
Merged-chr2-116977184-3	chr2	116977054	116977254	+	737.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77002.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.46	9.81	30.23	6.03	7.36	12.54	12.29	12.53	8.26	17.07	17.59	5.01
Merged-chr13-48873752-3	chr13	48873624	48873824	+	737.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2839.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	8.08	2.52	14.83	7.64	4.91	7.21	5.65	6.42	6.88	5.02	12.06	9.08
Merged-chr13-34864596-3	chr13	34864504	34864704	+	737.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10890.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	7.27	15.09	10.27	8.85	0.0	10.03	2.99	10.96	8.46	12.55	9.55	6.58
Merged-chr2-72369492-3	chr2	72369381	72369581	+	737.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 5 of 19)	intron (NM_023057, intron 5 of 19)	83780.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	8.08	9.81	10.84	11.26	9.41	4.7	7.31	11.58	8.06	9.04	12.56	9.4
Merged-chr4-53350767-2	chr4	53350674	53350874	+	737.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80542.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.04	3.27	10.84	4.83	8.18	3.45	9.3	15.31	15.54	2.51	11.05	8.14
Merged-chr13-111924668-2	chr13	111924587	111924787	+	737.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56751.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.5	0.0	2.41	9.82	12.86	9.63	7.99	7.08	5.52	8.04	5.33
Merged-chr5-92136883-2	chr5	92136810	92137010	+	737.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	815.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.46	7.55	6.28	6.03	8.18	8.15	8.3	4.63	4.13	7.53	5.53	6.27
Merged-chr10-80684394-2	chr10	80684312	80684512	+	737.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172457)	TTS (NM_172457)	-8119.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	8.48	3.52	1.14	4.42	15.96	8.15	0.66	7.6	11.21	11.05	11.56	10.65
Merged-chr1-86372191-2	chr1	86372096	86372296	+	737.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12622.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	5.65	5.79	5.7	5.23	10.23	5.64	3.32	5.92	13.37	8.54	13.06	8.14
Merged-chr2-32260809-3	chr2	32260698	32260898	+	737.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-693.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	13.33	7.8	9.7	4.83	13.09	14.74	1.99	7.18	10.23	17.57	10.55	8.77
Merged-chr15-80799313-1	chr15	80799213	80799413	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177124, intron 1 of 21)	(TC)n|Simple_repeat|Simple_repeat	703.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.81	4.53	2.28	1.61	7.36	9.09	1.33	4.04	6.1	5.52	3.01	4.07
Merged-chr2-168575044-2	chr2	168574947	168575147	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	15318.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.25	9.31	6.85	9.65	2.45	4.7	10.63	9.25	3.74	2.51	3.52	1.57
Merged-chr10-70250948-3	chr10	70250845	70251045	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	5669.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	9.69	6.54	8.56	7.64	7.36	5.02	11.29	11.58	9.44	9.54	25.63	13.16
Merged-chr6-87451679-1	chr6	87451579	87451779	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22685.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.4	2.77	4.56	0.8	6.55	13.8	10.96	4.88	3.93	13.56	6.03	4.07
Merged-chr3-84345567-1	chr3	84345467	84345667	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34354.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.81	1.01	5.7	4.02	9.41	3.45	1.33	6.17	4.92	4.52	8.54	4.39
Merged-chr19-11970555-1	chr19	11970455	11970655	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	4711.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	7.27	2.77	6.28	3.62	6.14	9.41	6.98	7.04	2.75	4.02	11.56	3.76
Merged-chr16-22470205-1	chr16	22470105	22470305	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346673, intron 23 of 23)	intron (NM_001346673, intron 23 of 23)	-30635.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.81	2.26	1.14	7.64	3.27	7.84	1.66	6.36	3.74	1.0	5.53	4.07
Merged-chr6-29208489-1	chr6	29208389	29208589	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302934, intron 3 of 14)	intron (NM_001302934, intron 3 of 14)	3808.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	4.44	3.02	5.13	4.42	0.82	5.02	3.99	3.31	11.41	6.03	11.05	12.53
Merged-chr2-26932692-1	chr2	26932592	26932792	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	819.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	4.85	2.52	0.0	1.21	7.36	14.11	6.64	6.42	5.51	12.05	11.56	5.01
Merged-chr9-37248471-1	chr9	37248371	37248571	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	7267.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.81	5.53	3.99	2.41	2.45	2.82	6.98	1.6	1.18	6.53	0.0	4.7
Merged-chr6-39562381-2	chr6	39562288	39562488	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4554.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	2.42	5.79	9.7	4.02	7.77	8.47	4.98	10.68	15.54	5.52	4.52	6.58
Merged-chr4-55364102-2	chr4	55363998	55364198	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	MIRc|SINE|MIR	14056.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	11.71	7.29	10.27	11.66	19.23	9.72	4.32	17.89	3.74	5.02	8.04	8.46
Merged-chr16-39193461-1	chr16	39193361	39193561	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4511.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.62	1.01	0.0	1.61	5.73	3.14	5.65	7.23	6.49	5.02	4.02	3.45
Merged-chr6-82985217-1	chr6	82985117	82985317	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	RLTR20A3_MM|LTR|ERVK	38295.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	4.04	1.01	3.42	6.44	5.32	7.21	8.97	7.51	3.93	7.03	7.54	3.45
Merged-chr2-14944212-1	chr2	14944112	14944312	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001309519, intron 2 of 12)	intron (NM_001309519, intron 2 of 12)	70556.0	NM_001309519	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	3.23	4.02	12.55	12.47	3.27	2.51	4.65	3.11	3.15	1.0	6.03	6.89
Merged-chr7-113143710-1	chr7	113143610	113143810	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1695.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	6.46	2.77	0.0	13.27	8.59	4.39	3.65	3.87	12.78	9.54	7.54	5.64
Merged-chr15-55502596-1	chr15	55502496	55502696	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 45 of 47)	intron (NM_181277, intron 45 of 47)	54716.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	1.62	3.52	0.0	4.02	5.32	3.76	4.65	6.17	2.36	4.02	4.52	0.94
Merged-chr13-23683783-1	chr13	23683683	23683883	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290380)	promoter-TSS (NM_001290380)	176.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	22.61	30.43	18.25	41.43	26.59	30.73	31.89	22.43	41.5	40.17	49.75	37.91
Merged-chr11-4629860-1	chr11	4629760	4629960	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027797, intron 1 of 3)	MIR3|SINE|MIR	151.0	NR_027797	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	0.0	2.01	1.14	2.41	7.77	7.53	3.32	7.91	7.28	7.03	3.52	4.7
Merged-chr1-86531083-1	chr1	86530983	86531183	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001360831)	TTS (NM_001360831)	4526.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.04	7.8	1.71	6.44	6.95	1.88	0.66	0.2	4.72	8.03	7.03	3.45
Merged-chr1-13214650-1	chr1	13214550	13214750	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-87487.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.0	3.02	1.14	4.42	3.27	5.96	2.66	9.48	0.0	0.0	3.52	0.63
Merged-chr4-129121106-2	chr4	129121002	129121202	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286083)	promoter-TSS (NM_001286083)	201.0	NM_010471	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	10.9	9.06	2.28	0.8	5.32	5.33	3.32	2.47	10.03	7.53	5.53	7.21
Merged-chr13-105290817-1	chr13	105290717	105290917	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	2197.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.04	1.76	0.0	2.82	8.59	6.59	3.32	7.04	6.69	1.0	2.51	1.57
Merged-chr8-61581469-1	chr8	61581369	61581569	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	9700.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.62	9.81	14.83	7.24	6.55	0.0	0.0	1.09	18.1	8.03	8.04	4.7
Merged-chr5-115125340-1	chr5	115125240	115125440	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175352, exon 5 of 5)	3' UTR (NM_175352, exon 5 of 5)	-5994.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	10.09	3.52	6.28	6.44	8.18	6.27	3.32	8.44	11.8	5.52	7.54	5.33
Merged-chr2-60046759-1	chr2	60046659	60046859	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	L1MD2|LINE|L1	78981.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	1.62	3.02	0.57	6.44	6.14	7.21	1.33	2.55	4.52	1.0	1.0	1.88
Merged-chr12-102495788-1	chr12	102495688	102495888	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013747, intron 12 of 12)	intron (NM_013747, intron 12 of 12)	25878.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.0	1.51	1.14	0.8	4.09	5.64	1.66	5.38	1.57	1.51	1.0	1.25
Merged-chr10-111096004-1	chr10	111095904	111096104	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68798.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.04	3.02	6.85	7.64	0.82	2.82	5.98	10.68	6.88	3.01	7.54	1.57
Merged-chr11-48837709-3	chr11	48837627	48837827	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347446, exon 1 of 7)	exon (NM_001347446, exon 1 of 7)	256.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	8.88	12.83	4.56	14.48	5.32	7.53	3.99	4.32	4.13	9.04	1.51	4.7
Merged-chr14-59201993-2	chr14	59201878	59202078	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	750.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	11.31	6.04	6.85	2.41	12.27	10.03	5.65	13.46	9.64	13.05	5.53	6.58
Merged-chr10-95323630-1	chr10	95323530	95323730	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001330138)	promoter-TSS (NM_001330138)	79.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	3.23	7.29	3.99	12.07	4.91	10.35	7.97	6.03	6.88	9.04	9.55	7.52
Merged-chr8-77419950-2	chr8	77419845	77420045	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 7 of 22)	intron (NM_030113, intron 7 of 22)	-97111.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.67	2.52	10.27	4.02	9.0	9.09	5.31	6.81	10.03	8.03	14.57	10.02
Merged-chr2-91182935-2	chr2	91182850	91183050	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	97.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	5.65	5.28	0.0	6.84	5.73	11.29	6.31	7.32	9.83	5.02	7.03	5.33
Merged-chr17-78249120-2	chr17	78249017	78249217	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48869.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	4.85	2.77	2.85	5.23	12.27	4.39	1.33	6.45	10.62	7.53	10.55	6.89
Merged-chr12-75819332-1	chr12	75819232	75819432	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	1014.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	4.85	8.8	0.0	6.44	5.32	2.2	3.32	5.16	3.34	12.05	11.05	4.39
Merged-chr18-60757251-2	chr18	60757034	60757234	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8469.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	8.08	2.01	5.13	2.01	3.68	3.14	4.32	3.34	3.54	3.51	2.51	5.64
Merged-chr19-10749032-1	chr19	10748932	10749132	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027805, intron 1 of 3)	intron (NR_027805, intron 1 of 3)	8085.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	17.36	12.83	7.99	10.05	9.0	5.96	0.66	2.02	4.13	2.51	1.0	0.63
Merged-chr1-161963186-1	chr1	161963086	161963286	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204904, intron 3 of 6)	intron (NM_001204904, intron 3 of 6)	5962.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	5.25	8.05	3.42	1.21	6.55	2.82	5.31	3.28	10.23	8.03	13.57	2.51
Merged-chr16-91935341-1	chr16	91935241	91935441	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3711.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.08	4.02	0.0	4.42	4.5	10.35	0.66	1.63	15.14	3.51	11.56	5.33
Merged-chr17-27557573-5	chr17	27557508	27557708	+	736.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039356, intron 2 of 5)	CpG-6152	955.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	6.06	3.77	6.85	3.62	3.27	4.7	2.66	3.42	6.1	9.04	7.03	6.58
Merged-chr12-72520755-2	chr12	72520628	72520828	+	736.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15629.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	3.23	7.55	5.7	7.24	6.14	5.33	11.29	7.32	7.08	12.05	10.05	7.21
Merged-chr13-111467494-3	chr13	111467380	111467580	+	736.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028487, intron 2 of 12)	intron (NM_028487, intron 2 of 12)	22647.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	11.31	11.82	5.13	4.83	6.55	13.8	6.98	8.41	22.62	11.05	14.57	4.07
Merged-chr11-98018933-3	chr11	98018866	98019066	+	736.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159320)	promoter-TSS (NM_001159320)	-594.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	11.71	6.04	11.98	7.24	4.09	8.15	2.66	5.97	12.39	10.54	8.54	10.34
Merged-chr13-58306619-2	chr13	58306529	58306729	+	736.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175214, intron 12 of 16)	L1MB8|LINE|L1	6520.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	9.69	2.52	5.7	8.85	4.91	7.21	5.31	8.66	8.46	6.03	13.06	10.34
Merged-chr5-21488749-2	chr5	21488643	21488843	+	736.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199632, intron 19 of 20)	HAL1|LINE|L1	-54784.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	10.5	7.29	17.11	11.26	3.68	10.98	4.65	12.59	4.52	5.02	9.55	6.58
Merged-chr16-3885563-2	chr16	3885447	3885647	+	736.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	928.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.25	2.28	0.0	13.91	8.78	3.99	12.64	9.05	5.02	4.52	5.64
Merged-chr5-62933810-2	chr5	62933716	62933916	+	736.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119993.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.81	1.26	3.42	0.4	2.45	1.88	4.32	4.18	11.01	12.55	15.58	10.65
Merged-chr3-121847434-5	chr3	121847277	121847477	+	736.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32075.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	2.42	3.27	0.0	3.62	4.09	1.25	6.31	4.46	2.56	5.02	2.01	6.58
Merged-chr2-126602427-3	chr2	126602332	126602532	+	736.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008230, intron 7 of 11)	intron (NM_008230, intron 7 of 11)	16246.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	6.06	8.8	15.97	3.22	21.68	14.11	6.64	5.94	11.8	16.57	13.57	15.66
Merged-chr4-147938890-2	chr4	147938782	147938982	+	736.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2013.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	4.44	4.78	17.11	8.45	9.41	7.21	6.31	6.62	3.15	3.51	6.03	1.57
Merged-chr16-27389987-3	chr16	27389794	27389994	+	736.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	938.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	4.44	5.28	6.85	2.82	6.55	15.68	8.64	5.21	8.85	13.05	14.07	6.27
Merged-chr18-82470204-2	chr18	82470096	82470296	+	736.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4927.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.63	3.77	7.99	3.62	10.64	10.66	5.31	18.31	10.62	8.54	28.64	8.14
Merged-chr3-89715182-2	chr3	89715161	89715361	+	736.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	23.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	8.88	7.55	13.12	4.02	5.32	5.33	8.64	2.33	7.08	3.51	6.53	5.95
Merged-chr16-93797567-3	chr16	93797433	93797633	+	736.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-2632.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	7.67	5.53	10.27	6.84	13.5	8.78	4.98	11.21	10.82	3.01	6.03	10.96
Merged-chr15-85383631-3	chr15	85383534	85383734	+	736.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016843, intron 6 of 11)	intron (NM_016843, intron 6 of 11)	47253.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	9.29	6.29	5.13	10.46	6.14	11.92	6.64	9.79	10.42	11.05	15.07	5.01
Merged-chrX-11629503-3	chrX	11629393	11629593	+	736.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	301671.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	10.09	7.29	19.97	9.65	3.27	4.7	5.31	9.93	7.87	6.03	16.58	8.46
Merged-chr17-29549267-3	chr17	29549169	29549369	+	736.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198647)	promoter-TSS (NM_198647)	324.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	12.52	7.29	5.13	9.65	9.82	8.15	5.65	7.57	9.44	7.03	13.06	3.13
Merged-chr1-153901354-4	chr1	153901227	153901427	+	736.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008131, intron 1 of 6)	intron (NM_008131, intron 1 of 6)	1398.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.63	6.29	3.99	6.44	9.0	4.39	4.32	8.64	8.26	16.57	9.55	4.7
Merged-chr15-80220468-2	chr15	80220360	80220560	+	736.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13620.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	2.83	5.28	5.7	4.02	11.05	9.72	5.31	7.09	10.03	14.56	10.55	7.52
Merged-chr10-80087683-3	chr10	80087558	80087758	+	736.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359637, intron 1 of 3)	ID_B1|SINE|B4	-12219.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.85	7.55	4.56	9.65	14.32	10.35	9.63	21.22	10.82	11.55	13.06	13.16
Merged-chr15-84944245-2	chr15	84944197	84944397	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7326.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	4.44	2.01	13.12	7.64	14.73	2.51	9.3	8.47	5.51	5.52	3.52	4.7
Merged-chr1-170863216-2	chr1	170863114	170863314	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 1 of 15)	L2|LINE|L2	4557.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	7.67	8.05	10.27	10.46	5.73	8.47	4.65	10.35	3.74	3.01	4.02	6.27
Merged-chr10-12836636-2	chr10	12836524	12836724	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	25111.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	8.88	8.55	7.99	14.88	11.45	2.82	11.63	6.39	10.62	8.03	8.54	2.19
Merged-chr18-62726791-1	chr18	62726691	62726891	+	736.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168423, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	14596.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	0.81	3.52	6.85	5.23	5.32	1.25	3.32	6.31	13.57	10.04	21.61	12.22
Merged-chr4-133806016-3	chr4	133805882	133806082	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52371.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.27	6.79	9.13	3.62	9.41	10.98	5.98	7.12	16.33	3.01	4.52	11.28
Merged-chr14-21981653-3	chr14	21981570	21981770	+	736.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7931.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	8.48	15.59	6.28	9.65	6.55	9.41	5.98	9.2	13.18	3.01	16.08	8.14
Merged-chr10-77519358-3	chr10	77519252	77519452	+	736.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3539.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	2.02	6.29	15.4	3.22	13.91	11.6	20.26	9.34	15.93	10.54	15.58	8.14
Merged-chr15-100039612-3	chr15	100039490	100039690	+	736.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	926.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	12.11	5.79	15.97	7.24	10.64	5.02	9.63	9.81	13.37	8.54	11.56	6.89
Merged-chr1-153413580-3	chr1	153413460	153413660	+	736.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033736, intron 1 of 3)	B2_Mm2|SINE|B2	673.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	12.92	5.53	4.56	6.03	6.55	10.35	1.33	6.31	9.83	11.55	10.55	9.71
Merged-chrX-53320801-2	chrX	53320687	53320887	+	736.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153099, intron 9 of 9)	intron (NR_153099, intron 9 of 9)	47363.0	NR_153100	73866.0	Mm.84527	NM_028671	ENSMUSG00000036013	Fam122c	4930432H15Rik|4930527G05Rik	family with sequence similarity 122, member C	protein-coding	4.44	1.01	3.42	3.22	12.27	11.6	9.97	10.57	11.21	19.08	10.05	9.71
Merged-chr5-21358812-3	chr5	21358712	21358912	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-13861.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.06	7.8	2.28	6.03	8.18	13.48	5.31	8.47	14.36	7.03	14.07	7.83
Merged-chr11-8606005-3	chr11	8605948	8606148	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	58487.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.67	7.29	0.0	2.82	6.95	9.72	3.32	4.6	10.03	12.55	5.02	3.45
Merged-chr10-80618396-1	chr10	80618296	80618496	+	736.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4384.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	6.86	3.52	1.14	6.03	10.64	7.53	3.99	7.85	5.31	3.01	7.03	6.58
Merged-chr16-28911244-3	chr16	28911149	28911349	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	18449.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	7.67	14.84	7.42	5.63	11.86	14.11	3.65	6.22	18.69	13.05	8.04	10.96
Merged-chr15-89359809-3	chr15	89359700	89359900	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115132, intron 1 of 19)	intron (NM_001115132, intron 1 of 19)	4081.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	12.92	10.56	4.56	7.24	4.91	9.41	4.98	4.77	12.19	14.06	8.54	5.33
Merged-chr3-144825366-2	chr3	144825265	144825465	+	736.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139148, exon 13 of 14)	exon (NM_139148, exon 13 of 14)	-5871.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	3.63	3.27	5.7	12.47	4.91	13.17	9.63	11.05	9.05	5.02	17.59	5.64
Merged-chr4-135972108-2	chr4	135972015	135972215	+	736.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011942, intron 1 of 9)	intron (NM_011942, intron 1 of 9)	479.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	5.25	2.01	4.56	4.02	9.82	5.96	3.32	9.17	9.64	16.57	6.03	8.46
Merged-chr6-117881460-3	chr6	117881341	117881541	+	736.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	18560.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	2.83	13.08	13.12	6.84	8.18	5.02	8.64	6.95	14.95	11.05	12.56	7.52
Merged-chr10-121256627-2	chr10	121256515	121256715	+	736.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53966.0	NR_152796	74647.0	Mm.370609	NR_152796	ENSMUSG00000112846	4930432O09Rik	-	RIKEN cDNA 4930432O09 gene	ncRNA	8.08	7.55	15.97	15.28	6.55	13.17	6.31	15.06	12.59	5.52	4.02	1.88
Merged-chr4-141977523-3	chr4	141977437	141977637	+	736.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-5455.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	8.08	8.55	9.13	5.63	13.09	10.98	8.64	12.45	13.37	13.56	34.17	10.02
Merged-chr11-62821992-3	chr11	62821915	62822115	+	736.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053169, intron 1 of 5)	intron (NM_053169, intron 1 of 5)	1762.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	19.79	13.08	17.68	12.07	5.73	10.66	8.3	5.69	12.78	8.03	3.52	1.88
Merged-chr19-41495618-3	chr19	41495517	41495717	+	736.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29635.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	11.71	4.53	13.12	9.65	24.96	10.03	3.99	10.6	9.44	17.57	7.03	8.14
Merged-chr19-55254685-3	chr19	55254548	55254748	+	736.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	1279.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	2.83	6.54	5.7	2.41	8.59	5.96	6.31	4.96	9.83	12.55	11.56	7.52
Merged-chr8-83090267-3	chr8	83090163	83090363	+	736.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75089.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	12.11	6.54	13.12	6.03	13.5	14.42	0.66	6.9	12.59	4.52	6.53	6.27
Merged-chr10-128933762-1	chr10	128933662	128933862	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001330160)	promoter-TSS (NM_001330160)	-51.0	NM_008398	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	9.69	6.54	1.71	6.03	10.23	4.39	4.65	8.27	5.51	2.51	3.52	2.51
Merged-chr2-79646495-2	chr2	79646396	79646596	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080558, intron 8 of 17)	intron (NM_080558, intron 8 of 17)	11071.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	4.85	3.77	5.13	4.83	7.36	8.78	5.65	14.19	7.08	7.53	9.55	6.58
Merged-chrX-7322507-2	chrX	7322435	7322635	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3177.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	3.63	5.28	4.56	3.22	8.18	5.33	6.31	2.02	8.85	7.03	9.55	2.82
Merged-chr10-24150328-3	chr10	24150268	24150468	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	1051.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.65	10.06	2.28	6.44	5.32	7.53	7.64	2.89	8.26	9.54	10.55	5.33
Merged-chr10-91029188-2	chr10	91029076	91029276	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042558, intron 17 of 26)	L1MB4|LINE|L1	53567.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	8.08	6.29	10.27	8.85	5.73	14.42	5.31	15.39	0.0	1.0	0.5	0.0
Merged-chr11-104544752-2	chr11	104544653	104544853	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145436, intron 1 of 18)	intron (NM_145436, intron 1 of 18)	5867.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	3.63	2.52	6.85	3.22	6.95	10.66	11.63	6.36	11.01	18.08	6.53	7.21
Merged-chr2-30708377-1	chr2	30708277	30708477	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12833.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	4.44	9.31	7.42	8.04	9.41	5.33	4.65	8.97	6.69	7.03	5.53	5.64
Merged-chr19-55781866-2	chr19	55781785	55781985	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	40075.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.81	4.78	2.28	4.83	3.68	3.76	5.98	6.9	11.41	6.03	10.55	5.33
Merged-chr2-130473194-1	chr2	130473094	130473294	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	22916.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.23	2.01	7.99	2.41	7.77	7.84	5.31	5.19	2.36	0.0	3.52	1.25
Merged-chr11-32348310-1	chr11	32348210	32348410	+	736.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	499.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	6.06	8.05	5.7	15.28	4.5	1.88	1.99	0.93	11.6	10.54	8.04	6.58
Merged-chr10-69217353-3	chr10	69217267	69217467	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	4173.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	2.83	4.53	15.4	12.07	2.86	5.33	4.98	13.37	11.21	10.54	11.56	16.92
Merged-chr3-59344307-2	chr3	59344177	59344377	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162884)	promoter-TSS (NM_001162884)	-21.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.04	6.54	1.71	4.83	8.59	4.7	8.97	4.99	5.7	8.54	4.02	7.52
Merged-chr13-49300846-2	chr13	49300747	49300947	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	8361.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.04	6.04	11.41	12.07	10.23	7.53	5.65	9.39	6.88	6.53	13.57	7.83
Merged-chr3-88000578-2	chr3	88000459	88000659	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109758)	promoter-TSS (NM_001109758)	-203.0	NM_001109758	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	3.63	2.52	3.42	10.46	3.68	5.33	5.98	9.0	13.77	6.53	7.03	7.52
Merged-chr4-141598995-1	chr4	141598895	141599095	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	929.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	5.65	0.75	2.28	0.8	0.0	3.76	6.31	1.12	0.39	3.01	2.01	0.63
Merged-chr7-30198831-2	chr7	30198711	30198911	+	736.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3658.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	12.11	4.78	7.99	4.02	3.27	11.92	10.3	6.59	10.23	8.54	13.06	7.52
Merged-chrX-167195525-3	chrX	167195427	167195627	+	736.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13691.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	14.54	2.01	11.41	8.85	4.91	11.29	18.27	18.25	8.46	8.03	5.53	2.51
Merged-chr5-96922840-3	chr5	96922693	96922893	+	736.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131152, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.86	4.53	5.13	8.04	17.18	5.96	10.63	14.47	7.28	13.56	8.54	5.01
Merged-chr1-36069362-3	chr1	36069215	36069415	+	736.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	915.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.23	12.07	3.42	4.02	9.0	4.08	3.32	6.59	5.51	8.03	8.54	6.27
Merged-chrX-12002284-1	chrX	12002184	12002384	+	736.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78269.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	9.69	6.04	2.85	4.83	11.86	12.86	7.97	5.8	12.0	5.02	6.53	4.7
Merged-chr12-35329936-2	chr12	35329845	35330045	+	736.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-135048.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.42	2.52	8.56	7.64	6.55	9.72	7.31	5.38	7.08	8.54	27.13	9.71
Merged-chr18-39249170-3	chr18	39249060	39249260	+	736.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	238085.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.65	7.29	9.13	14.48	13.09	9.72	6.64	7.85	7.08	7.03	12.56	4.39
Merged-chr19-14692355-2	chr19	14692253	14692453	+	736.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94170.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	5.65	6.04	9.13	8.45	8.59	11.6	7.31	8.21	13.18	10.54	14.57	5.33
Merged-chr19-10458290-2	chr19	10458199	10458399	+	736.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-852.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	8.88	3.77	8.56	18.5	12.27	8.78	10.3	12.42	13.18	3.51	10.05	7.21
Merged-chr6-84661809-1	chr6	84661709	84661909	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-67901.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.04	7.04	7.42	4.42	4.09	4.39	11.29	3.5	3.54	1.0	9.55	3.76
Merged-chr6-125274941-3	chr6	125274825	125275025	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	9400.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	9.69	5.79	5.7	4.83	6.14	11.92	7.64	3.25	17.31	7.53	2.01	4.39
Merged-chr2-164924655-3	chr2	164924546	164924746	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12896.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.06	10.31	6.28	9.25	9.41	7.84	3.32	6.31	15.14	19.58	19.09	7.83
Merged-chr10-17919205-1	chr10	17919105	17919305	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	28862.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.81	2.01	1.14	3.62	4.5	11.92	8.3	5.78	3.34	8.03	7.03	1.25
Merged-chr10-78160919-1	chr10	78160819	78161019	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8849.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.23	4.28	9.13	2.41	5.32	7.21	4.65	5.16	4.33	3.01	10.05	5.33
Merged-chr2-71594684-1	chr2	71594584	71594784	+	736.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-47930.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.11	13.37	11.05	14.57	18.8
Merged-chr11-103233118-3	chr11	103233008	103233208	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 6 of 15)	intron (NM_016896, intron 6 of 15)	-14676.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	12.52	5.03	10.84	10.86	12.68	10.35	4.32	7.54	16.13	10.54	6.53	8.77
Merged-chr4-129377860-1	chr4	129377760	129377960	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_028603, exon 1 of 5)	5' UTR (NM_028603, exon 1 of 5)	168.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	5.65	6.54	6.28	4.02	5.32	6.27	5.98	6.11	2.16	7.53	4.52	1.57
Merged-chr9-109095556-1	chr9	109095456	109095656	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172775, exon 1 of 38)	5' UTR (NM_172775, exon 1 of 38)	120.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	2.83	2.77	3.99	5.23	6.14	6.59	5.98	4.23	6.49	5.02	1.0	3.76
Merged-chr2-117146831-3	chr2	117146725	117146925	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25754.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	11.71	8.8	9.7	4.83	12.27	5.33	7.31	9.81	9.44	6.53	11.56	10.34
Merged-chr19-14239709-3	chr19	14239602	14239802	+	736.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196248.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	6.46	9.31	10.27	21.72	23.32	12.86	11.96	22.01	11.01	7.53	9.55	9.08
Merged-chr11-106673695-3	chr11	106673604	106673804	+	736.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	41577.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	8.88	9.81	1.14	4.83	15.14	13.8	7.64	8.02	8.65	5.52	8.04	6.89
Merged-chr2-145823807-2	chr2	145823710	145823910	+	736.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37694.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	2.83	1.01	10.27	7.24	6.95	4.7	3.65	7.99	2.95	5.52	7.54	3.45
Merged-chr7-144942319-4	chr7	144942219	144942419	+	736.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2394.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.88	10.82	6.85	4.42	12.27	5.96	11.63	9.53	11.01	11.05	9.55	10.96
Merged-chr6-129740465-2	chr6	129740351	129740551	+	736.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177155)	promoter-TSS (NM_177155)	33.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	9.29	2.77	14.83	3.62	11.45	7.21	1.66	11.5	2.36	4.52	8.04	4.07
Merged-chr7-132765059-1	chr7	132764959	132765159	+	736.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11857.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	8.08	4.28	3.42	10.05	7.36	10.66	10.63	7.79	4.72	5.52	3.52	1.57
Merged-chr9-107757603-2	chr9	107757502	107757702	+	736.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153191, intron 5 of 23)	intron (NR_153191, intron 5 of 23)	13400.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	20.59	7.29	10.27	11.26	9.41	10.98	7.31	14.75	0.0	0.0	0.0	0.31
Merged-chr8-34101178-2	chr8	34101092	34101292	+	736.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	6622.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	2.42	7.8	2.28	2.41	4.91	6.9	3.32	7.77	14.36	11.55	18.09	5.64
Merged-chr1-193138850-3	chr1	193138753	193138953	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8583.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	8.08	4.78	2.85	6.44	11.45	5.96	9.63	7.32	9.24	3.01	16.58	8.77
Merged-chr11-4266631-1	chr11	4266531	4266731	+	736.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039537)	promoter-TSS (NM_001039537)	-165.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	8.88	7.55	7.99	4.02	6.14	11.6	7.31	6.25	6.88	7.53	3.52	3.45
Merged-chr13-106760433-4	chr13	106760409	106760609	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176449.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	9.29	6.79	9.13	9.25	6.95	7.53	8.3	12.87	3.93	5.02	14.07	3.76
Merged-chr2-128776674-3	chr2	128776589	128776789	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-41614.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.65	8.05	14.26	4.42	9.82	8.15	6.64	8.27	12.78	13.05	10.55	8.14
Merged-chr6-86583772-3	chr6	86583682	86583882	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44392.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	9.69	5.28	9.13	6.44	2.45	7.53	4.32	12.95	11.8	11.55	21.61	4.7
Merged-chr15-82148744-1	chr15	82148644	82148844	+	736.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	1475.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	4.04	11.07	4.56	8.45	6.55	16.62	3.65	2.02	11.01	9.54	13.57	8.46
Merged-chr10-20916606-3	chr10	20916503	20916703	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35944.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	13.33	9.06	14.26	4.83	11.05	16.31	6.64	6.81	9.24	5.52	9.55	8.46
Merged-chr2-173812046-2	chr2	173811940	173812140	+	736.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74469.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.83	8.8	9.7	8.45	8.18	7.53	1.99	7.29	7.28	8.03	9.04	3.13
Merged-chr3-27629651-2	chr3	27629540	27629740	+	736.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-44645.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	4.85	5.53	6.85	2.01	5.73	6.59	1.66	7.46	13.37	3.51	10.05	9.08
Merged-chr10-128212999-3	chr10	128212937	128213137	+	736.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1243.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	11.71	9.31	3.99	8.04	4.5	5.96	7.97	7.18	10.42	13.56	6.53	7.52
Merged-chr1-135259231-3	chr1	135259135	135259335	+	736.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163131)	promoter-TSS (NM_001163131)	-763.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	6.06	9.06	9.7	6.84	6.14	10.35	6.64	7.49	11.6	12.55	12.06	7.52
Merged-chr1-171839778-3	chr1	171839699	171839899	+	736.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 1 of 8)	intron (NM_001289470, intron 1 of 8)	102.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	2.83	9.06	9.7	4.83	6.95	7.21	5.65	4.91	10.82	8.54	6.03	8.77
Merged-chr8-120608097-3	chr8	120607982	120608182	+	736.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_197988)	TTS (NM_197988)	-19007.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	7.67	7.04	5.7	4.83	6.14	9.41	7.31	8.5	11.41	12.55	8.04	8.46
Merged-chr18-61454741-3	chr18	61454645	61454845	+	736.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	29862.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	9.69	13.08	11.41	8.85	17.59	4.08	7.64	6.53	21.83	21.59	12.56	10.02
Merged-chr11-119947036-1	chr11	119946936	119947136	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	3944.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.65	5.03	4.56	4.83	5.32	5.64	1.0	6.79	5.11	2.51	1.0	4.39
Merged-chr5-31228923-2	chr5	31228834	31229034	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8389.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	11.31	7.55	11.41	7.24	21.27	11.6	9.3	16.4	17.7	9.04	10.55	7.21
Merged-chr13-102847780-1	chr13	102847680	102847880	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	87525.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	1.62	3.52	1.14	3.62	2.86	1.88	5.31	9.08	0.79	0.0	1.51	1.57
Merged-chr12-113017205-1	chr12	113017105	113017305	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	2697.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	10.5	5.03	22.82	8.85	4.09	2.51	3.99	0.79	2.56	1.51	1.51	0.0
Merged-chr12-108808201-2	chr12	108808096	108808296	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009537, intron 2 of 4)	intron (NM_009537, intron 2 of 4)	14885.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	4.85	10.82	0.0	3.22	6.55	13.17	1.99	5.61	11.6	9.54	6.53	4.7
Merged-chrX-133898372-3	chrX	133898275	133898475	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019656)	promoter-TSS (NM_019656)	54.0	NM_019656	56496.0	Mm.46701	NM_019656	ENSMUSG00000067377	Tspan6	6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6	tetraspanin 6	protein-coding	14.13	12.07	17.11	9.65	7.36	6.9	5.31	10.4	11.6	6.03	9.55	5.95
Merged-chr14-7880810-1	chr14	7880710	7880910	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081427, intron 4 of 45)	intron (NM_001081427, intron 4 of 45)	62853.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	2.42	2.26	7.42	2.01	3.27	5.64	3.65	6.45	7.08	3.51	7.03	8.14
Merged-chr3-65905768-2	chr3	65905674	65905874	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52475.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.69	10.82	7.42	11.66	8.18	5.02	10.63	8.21	6.49	9.04	7.54	6.27
Merged-chr13-115178386-1	chr13	115178286	115178486	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76422.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.42	2.52	0.0	7.64	2.45	0.63	8.64	6.06	7.28	4.52	5.53	1.57
Merged-chr9-120020433-2	chr9	120020334	120020534	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	3164.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	10.09	2.52	5.13	7.24	9.41	3.76	3.32	6.42	9.83	14.06	10.05	4.7
Merged-chr2-129340420-1	chr2	129340320	129340520	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29482.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.42	3.52	1.14	4.02	4.91	11.29	8.64	1.57	9.64	6.03	2.01	4.39
Merged-chr16-75831601-1	chr16	75831501	75831701	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64783.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	1.21	3.52	1.14	0.8	4.09	7.84	5.98	5.19	1.97	2.51	3.52	0.31
Merged-chr19-46518665-1	chr19	46518565	46518765	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17017.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	1.51	5.7	0.0	1.64	9.72	0.66	5.55	1.38	3.01	2.51	3.76
Merged-chr7-99530080-3	chr7	99529986	99530186	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-5400.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	16.56	10.56	7.99	6.44	11.05	14.74	5.31	3.93	14.16	9.04	4.52	4.39
Merged-chr4-132800129-1	chr4	132800029	132800229	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3765.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.27	4.02	3.99	3.62	9.41	10.35	1.99	4.85	5.9	6.03	5.02	7.21
Merged-chrX-163929737-1	chrX	163929637	163929837	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026887)	TTS (NM_026887)	20720.0	NM_001290379	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	2.83	3.27	6.85	8.04	9.0	7.53	2.33	6.9	8.06	5.52	14.07	4.39
Merged-chr5-103722159-1	chr5	103722059	103722259	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-32003.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.46	5.03	5.13	4.83	11.05	16.31	0.0	2.05	10.42	9.54	7.03	8.77
Merged-chr5-150097919-1	chr5	150097819	150098019	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79244.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	2.02	3.27	2.28	1.61	11.86	13.8	8.97	6.67	3.93	2.01	6.53	5.01
Merged-chr7-19399972-1	chr7	19399872	19400072	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001286038)	promoter-TSS (NM_001286038)	-51.0	NM_146182	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	10.5	5.79	1.14	6.84	4.09	4.39	6.31	3.17	8.06	9.04	8.04	5.01
Merged-chr8-25519342-1	chr8	25519242	25519442	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010206, exon 1 of 18)	5' UTR (NM_010206, exon 1 of 18)	583.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	2.83	7.8	8.56	0.4	0.82	5.64	6.31	4.07	7.08	5.02	4.52	8.46
Merged-chr19-16318749-1	chr19	16318649	16318849	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-3745.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	4.04	3.52	7.42	3.62	1.64	2.51	4.32	3.93	4.13	1.51	6.03	3.13
Merged-chr12-102704840-1	chr12	102704740	102704940	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	29.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	22.61	12.58	10.27	10.46	13.91	15.99	15.94	15.81	18.49	16.57	22.11	9.71
Merged-chr10-57734130-1	chr10	57734030	57734230	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039050, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	-50793.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.44	3.52	5.13	6.03	7.36	4.39	1.66	5.52	6.88	4.52	0.0	3.13
Merged-chr8-120783855-1	chr8	120783755	120783955	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45216.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.04	4.28	12.55	2.01	9.41	5.96	6.64	8.05	6.69	5.52	7.03	3.76
Merged-chr4-133545514-2	chr4	133545388	133545588	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	539.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	12.52	5.53	8.56	3.62	6.14	4.7	14.62	6.59	11.01	11.05	6.03	10.34
Merged-chr18-44605652-1	chr18	44605552	44605752	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56013.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	2.42	2.52	0.0	9.65	4.91	2.51	8.97	7.18	0.39	0.0	0.0	0.0
Merged-chr13-119406794-1	chr13	119406694	119406894	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2217.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.44	7.55	1.14	2.82	5.73	4.39	6.64	5.38	4.33	3.01	5.53	0.94
Merged-chr7-102245353-2	chr7	102245241	102245441	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4777.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	8.88	7.55	9.13	3.22	6.95	4.39	6.31	6.59	10.82	11.05	5.53	8.14
Merged-chr11-19026865-1	chr11	19026765	19026965	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7896.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	6.86	3.77	4.56	1.61	4.5	3.45	6.64	6.11	1.57	5.52	7.54	3.45
Merged-chr13-38613517-1	chr13	38613417	38613617	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139063, intron 3 of 4)	intron (NM_139063, intron 3 of 4)	21592.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	5.25	4.53	5.13	13.27	3.27	3.76	9.97	7.04	2.36	4.52	6.03	5.33
Merged-chr5-136929228-1	chr5	136929128	136929328	+	736.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015555, intron 3 of 3)	intron (NR_015555, intron 3 of 3)	10082.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	2.42	4.28	3.42	3.62	3.68	4.08	3.32	2.5	14.75	14.56	12.06	9.4
Merged-chr16-97533964-2	chr16	97533862	97534062	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2119.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	7.27	10.06	3.42	1.61	12.27	8.47	3.32	9.2	4.13	3.51	0.5	0.63
Merged-chr4-16089058-1	chr4	16088958	16089158	+	736.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74585.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.23	7.29	12.55	10.86	7.77	1.88	3.32	8.1	8.06	1.0	10.55	9.71
Merged-chr12-21369702-1	chr12	21369602	21369802	+	736.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3930.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.81	1.51	3.42	0.8	6.95	3.76	0.0	3.62	9.83	6.53	11.05	6.58
Merged-chr18-24652761-2	chr18	24652698	24652898	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-893.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	1.62	5.79	1.14	3.62	7.77	11.6	3.65	3.95	9.44	8.03	11.05	7.83
Merged-chr1-152509385-1	chr1	152509285	152509485	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_177756, exon 12 of 12)	3' UTR (NM_177756, exon 12 of 12)	109518.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	7.29	7.99	2.82	0.82	1.25	0.0	0.7	2.56	0.0	0.5	2.51
Merged-chr11-54092401-2	chr11	54092295	54092495	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8529.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	8.88	6.04	9.7	2.41	6.14	9.41	4.65	9.14	7.08	15.06	12.06	9.71
Merged-chr4-62439862-1	chr4	62439762	62439962	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5136.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	4.04	4.78	10.84	4.02	4.5	4.7	2.33	8.52	4.92	1.0	9.04	5.33
Merged-chr13-101548068-3	chr13	101547971	101548171	+	735.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33B|LTR|ERVL	144559.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	9.29	5.53	7.99	8.85	4.91	5.96	7.97	10.96	10.42	17.57	7.03	10.96
Merged-chr5-8622440-3	chr5	8622434	8622634	+	735.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198620, exon 1 of 10)	exon (NM_198620, exon 1 of 10)	418.0	NM_001347311	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	3.23	5.03	9.13	5.23	20.46	10.35	10.96	9.98	12.0	13.05	8.54	9.4
Merged-chr3-84337758-2	chr3	84337653	84337853	+	735.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32978.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.81	3.02	0.57	0.4	4.91	11.6	9.63	7.23	5.7	8.54	10.05	7.21
Merged-chr7-142982054-3	chr7	142981983	142982183	+	735.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12819.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	8.48	7.04	10.27	5.23	5.32	10.66	8.3	4.37	17.31	4.52	17.59	10.34
Merged-chr12-44222124-3	chr12	44222035	44222235	+	735.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045113, exon 1 of 1)	non-coding (NR_045113, exon 1 of 1)	779.0	NR_045113	100039062.0	Mm.490648	NR_045113		Gm2027	-	nuclear assembly factor 1 homolog pseudogene	pseudo	6.46	6.29	2.85	6.44	6.95	5.96	4.98	10.63	4.33	7.53	8.54	9.08
Merged-chr1-63668990-3	chr1	63668900	63669100	+	735.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081658, intron 6 of 14)	MTD|LTR|ERVL-MaLR	17927.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	12.92	12.32	12.55	4.42	11.45	5.64	4.98	12.06	9.05	9.04	15.58	5.95
Merged-chr10-40133244-2	chr10	40133145	40133345	+	735.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9009.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.65	2.52	8.56	5.63	8.18	8.47	9.97	15.39	12.0	10.54	6.03	5.33
Merged-chr2-60076964-2	chr2	60076857	60077057	+	735.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	48783.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.06	5.28	9.7	9.25	10.23	17.87	11.96	16.77	4.72	8.03	21.1	4.39
Merged-chr13-41017183-2	chr13	41017041	41017241	+	735.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025387, exon 2 of 6)	5' UTR (NM_025387, exon 2 of 6)	891.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	4.44	6.79	6.85	2.82	7.77	5.96	9.63	7.93	6.88	6.03	12.56	6.89
Merged-chr1-65536469-2	chr1	65536383	65536583	+	735.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	225226.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	1.62	7.04	5.7	5.23	6.55	12.86	9.63	14.92	12.39	1.51	20.1	5.95
Merged-chr2-80579433-3	chr2	80579299	80579499	+	735.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290745, intron 1 of 31)	intron (NM_001290745, intron 1 of 31)	1783.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	10.09	9.56	9.13	9.65	7.77	8.47	5.98	8.97	13.37	8.03	9.04	8.46
Merged-chr1-36556138-3	chr1	36556037	36556237	+	735.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	1420.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	10.09	5.53	10.27	6.03	9.82	13.48	14.95	8.02	7.67	15.06	20.1	9.4
Merged-chr4-99191796-3	chr4	99191688	99191888	+	735.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2146.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.27	10.06	8.56	6.44	5.32	15.68	2.99	10.74	11.41	21.59	10.05	8.77
Merged-chr3-131701157-3	chr3	131701057	131701257	+	735.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135125.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	12.11	9.06	5.13	8.85	4.91	7.21	3.99	7.51	24.78	10.54	20.6	10.65
Merged-chr2-109278847-2	chr2	109278751	109278951	+	735.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	-561.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	4.04	5.79	5.7	3.22	4.09	5.02	5.31	5.66	12.39	6.53	10.55	7.21
Merged-chr10-86879382-2	chr10	86879290	86879490	+	735.724976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	100385.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	9.69	6.79	12.55	11.66	10.64	5.64	6.64	15.17	4.72	6.03	4.52	7.52
Merged-chr11-117870818-3	chr11	117870708	117870908	+	735.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027919, intron 3 of 6)	intron (NM_027919, intron 3 of 6)	2718.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	13.33	9.06	11.41	8.04	14.73	7.84	8.64	4.71	19.47	16.07	20.6	8.46
Merged-chr14-47371867-3	chr14	47371777	47371977	+	735.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1983.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.46	8.3	10.27	8.45	13.5	10.98	6.31	13.18	14.95	21.09	12.56	10.96
Merged-chr16-76410491-3	chr16	76410419	76410619	+	735.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36692.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.85	5.03	6.85	5.63	6.55	10.35	15.94	19.23	11.01	4.52	9.55	6.89
Merged-chr10-50740284-2	chr10	50740193	50740393	+	735.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 30 of 41)	intron (NM_198007, intron 30 of 41)	147624.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	13.73	6.04	6.85	4.83	14.73	9.72	10.96	7.35	5.9	12.55	12.06	8.77
Merged-chr7-139979162-3	chr7	139979067	139979267	+	735.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-412.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	10.09	5.53	12.55	11.66	17.59	11.6	16.28	15.87	5.51	8.54	10.55	9.71
Merged-chr2-148579228-1	chr2	148579128	148579328	+	735.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-93387.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.81	3.27	6.85	0.8	6.95	6.59	4.98	9.9	1.97	2.01	7.54	1.88
Merged-chr9-106296917-3	chr9	106296818	106297018	+	735.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15857.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	7.27	9.06	4.56	6.84	11.05	9.41	5.98	2.02	45.43	57.74	85.92	31.01
Merged-chr3-92150842-2	chr3	92150715	92150915	+	735.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8061.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	4.85	6.79	4.56	2.41	3.68	7.21	2.99	6.9	16.13	19.08	14.57	9.4
Merged-chr17-56183539-2	chr17	56183404	56183604	+	735.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080837, intron 1 of 5)	intron (NM_080837, intron 1 of 5)	416.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	10.5	9.56	8.56	12.07	7.36	13.8	5.31	10.01	7.47	12.05	12.06	15.35
Merged-chr17-78402065-3	chr17	78401963	78402163	+	735.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 4 of 9)	intron (NM_001360407, intron 4 of 9)	16089.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	8.48	10.06	3.42	12.87	9.82	10.98	12.62	18.56	8.06	10.04	15.58	2.19
Merged-chr2-131505897-3	chr2	131505805	131506005	+	735.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	14043.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.86	8.3	16.54	14.48	13.5	5.96	3.32	13.96	12.0	2.51	8.04	13.47
Merged-chr15-73426151-3	chr15	73426040	73426240	+	735.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2949.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	15.34	6.29	14.26	8.85	15.14	7.53	5.65	11.75	8.06	7.53	12.06	11.59
Merged-chr1-180971940-2	chr1	180971844	180972044	+	735.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144794, intron 19 of 22)	intron (NM_144794, intron 19 of 22)	29426.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	13.73	7.29	9.7	9.65	5.32	8.15	3.32	9.59	5.9	6.03	8.04	5.33
Merged-chr10-87860270-2	chr10	87860170	87860370	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	-841.0	NM_001111274	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.06	4.78	5.13	6.44	8.59	7.53	3.65	6.7	10.23	11.05	10.05	10.34
Merged-chr17-78372848-2	chr17	78372750	78372950	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	45302.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.44	6.29	7.99	3.22	5.32	14.74	11.29	7.49	9.24	7.03	13.06	3.45
Merged-chr2-166728439-3	chr2	166728341	166728541	+	735.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14609.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.67	7.8	1.14	4.83	10.23	15.05	9.63	5.92	21.44	19.08	12.56	13.47
Merged-chr15-38198885-1	chr15	38198785	38198985	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20318.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	2.42	2.01	1.14	2.01	3.27	8.78	5.31	6.0	4.72	1.0	2.01	4.7
Merged-chr3-52179948-1	chr3	52179848	52180048	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74942.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	8.88	3.77	6.28	4.83	4.91	8.47	9.63	7.77	5.7	4.02	6.03	0.94
Merged-chr14-106787538-2	chr14	106787431	106787631	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-301011.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	1.62	1.76	5.7	4.02	4.09	8.78	6.64	12.22	5.7	12.05	8.04	8.46
Merged-chr4-3713234-1	chr4	3713134	3713334	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-1730.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	4.85	2.01	2.85	5.63	12.68	7.21	3.99	6.95	3.54	6.03	10.05	3.13
Merged-chr17-25868340-3	chr17	25868246	25868446	+	735.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026633, intron 2 of 4)	CpG	392.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	10.09	11.82	10.27	3.22	13.09	10.98	8.64	6.5	10.62	10.04	8.54	7.52
Merged-chr3-148958863-1	chr3	148958763	148958963	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4228.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.42	4.28	2.85	6.44	3.27	5.64	5.65	9.36	2.36	6.03	2.01	2.51
Merged-chr16-38321572-2	chr16	38321490	38321690	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081025, intron 8 of 16)	intron (NM_001081025, intron 8 of 16)	20270.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0.81	2.52	10.84	6.44	4.09	8.47	3.32	8.24	10.42	7.03	17.59	6.27
Merged-chr1-134075764-3	chr1	134075661	134075861	+	735.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	3394.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	2.83	10.56	7.42	8.85	6.55	4.39	5.65	11.41	7.47	5.02	9.55	9.71
Merged-chr1-153434010-3	chr1	153433912	153434112	+	735.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033162, intron 3 of 9)	MTD|LTR|ERVL-MaLR	8803.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	6.06	15.59	9.13	10.05	13.09	14.11	6.64	13.43	10.23	11.05	12.56	13.16
Merged-chr12-102290824-3	chr12	102290726	102290926	+	735.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	7185.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	7.67	5.53	7.99	4.02	15.55	20.38	10.63	14.16	11.01	8.03	10.05	5.95
Merged-chr2-35338591-2	chr2	35338490	35338690	+	735.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1581.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.46	7.29	13.12	3.22	6.55	12.86	12.95	8.05	13.37	9.04	6.53	5.01
Merged-chr9-57522315-3	chr9	57522219	57522419	+	735.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	1087.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	7.67	10.06	4.56	5.63	8.59	5.33	5.65	4.32	14.55	5.52	12.06	14.1
Merged-chr13-99191188-2	chr13	99191095	99191295	+	735.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	6372.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.65	9.81	2.85	4.83	13.91	5.64	17.94	15.67	11.6	2.51	9.04	3.13
Merged-chr7-109986948-2	chr7	109986867	109987067	+	735.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-737.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	8.88	5.79	5.13	11.26	4.09	5.33	4.98	2.36	13.37	16.57	13.06	12.84
Merged-chr12-31984851-3	chr12	31984730	31984930	+	735.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 4 of 10)	Lx8|LINE|L1	-34585.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	6.06	8.05	8.56	4.83	10.64	8.47	9.63	12.34	10.23	11.05	14.57	10.34
Merged-chr6-124996761-2	chr6	124996703	124996903	+	735.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175696)	promoter-TSS (NM_175696)	83.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	7.67	7.29	2.28	4.42	2.05	3.14	4.65	3.42	9.83	8.03	6.53	5.01
Merged-chr4-151859470-2	chr4	151859338	151859538	+	735.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2330.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	6.86	5.53	4.56	11.26	10.64	4.08	5.98	7.51	3.93	6.03	8.04	10.34
Merged-chr12-44919829-2	chr12	44919728	44919928	+	735.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	154655.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.02	1.76	5.13	3.62	10.23	9.09	20.93	15.42	11.6	10.54	10.05	8.77
Merged-chr19-21286755-6	chr19	21286660	21286860	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009551)	TTS (NM_009551)	14482.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	6.86	8.8	3.42	7.24	6.95	15.99	5.98	3.0	12.19	13.56	3.01	7.52
Merged-chr2-38473002-2	chr2	38472895	38473095	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38702.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.65	13.08	11.41	2.41	6.95	8.78	7.31	12.28	5.51	8.54	5.02	3.13
Merged-chr8-111325391-3	chr8	111325259	111325459	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310613, intron 4 of 10)	L1M5|LINE|L1	12846.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	3.23	7.29	5.7	8.04	18.41	8.78	11.29	10.49	13.18	10.04	17.08	7.21
Merged-chr18-38381414-1	chr18	38381314	38381514	+	735.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37493.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.88	2.77	6.85	4.02	5.73	9.09	8.97	6.42	5.9	2.51	11.56	3.45
Merged-chr10-17576056-3	chr10	17575960	17576160	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.63	7.55	5.7	9.65	7.77	5.64	13.95	19.85	19.08	15.57	13.57	8.46
Merged-chr5-93092500-3	chr5	93092381	93092581	+	735.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-935.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	9.69	12.83	11.98	14.08	9.41	16.62	10.63	11.89	9.83	10.04	7.54	6.89
Merged-chr4-99033210-3	chr4	99033138	99033338	+	735.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013913, intron 2 of 6)	intron (NM_013913, intron 2 of 6)	2284.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	2.83	9.81	7.99	7.24	2.86	10.35	14.62	12.06	6.49	13.56	16.08	10.34
Merged-chr11-53411907-3	chr11	53411805	53412005	+	735.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033565, exon 20 of 21)	exon (NM_033565, exon 20 of 21)	2708.0	NR_105885	102465554.0		NR_105885	ENSMUSG00000105908	Mir6920	mmu-mir-6920	microRNA 6920	ncRNA	15.34	6.04	14.83	12.47	14.73	6.59	9.97	11.55	11.01	4.02	10.55	3.45
Merged-chr4-129745985-2	chr4	129745888	129746088	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3685.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	4.04	1.26	5.7	2.82	14.73	5.33	5.98	8.05	8.26	6.53	17.08	4.39
Merged-chr2-173019419-1	chr2	173019319	173019519	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2483.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.42	6.79	6.28	3.62	9.82	5.02	6.64	7.04	5.7	8.54	6.53	5.64
Merged-chr1-177713812-2	chr1	177713725	177713925	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-15989.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	3.23	4.53	11.41	1.61	13.09	6.59	7.64	8.21	8.85	13.05	9.04	5.64
Merged-chr1-164336086-2	chr1	164335979	164336179	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178071, intron 5 of 9)	RLTR12B|LTR|ERVK	28407.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	5.25	3.52	4.56	1.61	13.5	10.98	8.3	10.37	15.34	9.54	11.56	6.58
Merged-chr13-45889217-2	chr13	45889174	45889374	+	735.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	75717.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	7.67	2.77	0.0	11.26	2.86	3.76	2.66	3.67	4.13	2.01	7.54	3.13
Merged-chr11-100770975-1	chr11	100770875	100771075	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031871)	promoter-TSS (NM_031871)	-18.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	2.83	1.01	5.13	5.23	4.91	9.09	5.98	6.31	5.7	6.03	6.03	3.13
Merged-chr5-142936474-2	chr5	142936391	142936591	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23864.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	10.09	4.02	6.85	4.02	10.23	6.59	2.66	5.94	29.11	17.57	8.54	10.34
Merged-chr7-3957613-2	chr7	3957523	3957723	+	735.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42122.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	8.88	3.02	7.99	14.88	10.23	11.29	8.64	12.28	6.29	13.05	9.04	2.51
Merged-chr17-86971122-2	chr17	86971031	86971231	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8020.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	2.02	5.53	1.71	8.04	9.0	2.82	6.98	6.5	19.67	13.05	4.02	8.77
Merged-chr8-94950250-3	chr8	94950149	94950349	+	735.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26555.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	12.52	11.32	5.7	4.02	2.45	10.98	11.63	6.93	8.85	11.05	6.53	5.33
Merged-chr3-108654672-3	chr3	108654574	108654774	+	735.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177771, exon 2 of 13)	5' UTR (NM_001177771, exon 2 of 13)	734.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	3.23	7.8	6.85	17.7	8.18	5.33	2.99	10.07	11.8	6.03	14.57	10.02
Merged-chr1-36940535-2	chr1	36940426	36940626	+	735.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-999.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	8.08	5.53	4.56	8.85	9.0	10.35	9.3	7.21	7.28	15.57	15.58	7.52
Merged-chr3-87907390-2	chr3	87907302	87907502	+	735.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	552.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	1.21	10.56	2.85	1.61	3.27	18.19	6.98	4.91	11.21	12.05	9.55	4.07
Merged-chr18-58134020-2	chr18	58133906	58134106	+	735.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010181, intron 7 of 64)	L1MB8|LINE|L1	75920.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	2.02	2.01	2.28	0.4	12.27	5.64	3.32	11.8	11.41	8.03	13.57	5.95
Merged-chr1-152539979-3	chr1	152539824	152540024	+	735.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	85293.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.86	5.28	13.12	9.65	5.73	5.96	9.3	12.39	11.41	9.54	6.53	5.33
Merged-chrX-6418326-2	chrX	6418240	6418440	+	735.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313764, intron 1 of 8)	intron (NM_001313764, intron 1 of 8)	2598.0	NM_001313764	208431.0	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	5.25	3.27	6.85	6.44	12.27	6.9	8.64	16.12	9.05	11.05	19.09	8.14
Merged-chr14-44078019-3	chr14	44077897	44078097	+	735.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-24657.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	3.63	4.28	10.84	14.88	11.86	5.64	10.3	16.77	2.56	13.05	10.55	8.77
Merged-chr4-53079035-2	chr4	53078961	53079161	+	735.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 18 of 49)	intron (NM_013454, intron 18 of 49)	67181.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	7.67	3.02	2.85	4.83	9.41	6.9	6.31	11.89	11.01	5.52	24.12	8.46
Merged-chr5-122103264-3	chr5	122103141	122103341	+	735.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010861, intron 3 of 6)	intron (NM_010861, intron 3 of 6)	2290.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	8.88	14.09	7.99	13.27	21.68	18.5	3.99	8.83	10.23	8.03	6.03	6.58
Merged-chr17-73037108-3	chr17	73037008	73037208	+	735.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70877.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	10.09	10.56	11.41	7.64	9.0	10.03	7.64	17.27	11.41	4.52	11.05	8.14
Merged-chr6-71144033-4	chr6	71143953	71144153	+	735.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178413, intron 1 of 9)	CpG	327.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	8.48	4.28	3.42	7.64	5.32	5.96	15.61	7.37	12.19	12.55	12.56	12.53
Merged-chr5-148711635-1	chr5	148711535	148711735	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30205.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.5	0.57	2.01	0.0	0.63	1.99	1.85	11.41	5.02	10.55	3.45
Merged-chr19-5291747-1	chr19	5291647	5291847	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030109, intron 4 of 20)	intron (NM_030109, intron 4 of 20)	3708.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	3.63	3.27	0.0	4.42	1.64	7.53	1.66	7.21	13.57	7.53	4.52	4.07
Merged-chr15-35376673-1	chr15	35376573	35376773	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 2 of 61)	URR1A|DNA|hAT-Charlie	5127.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	6.86	2.52	2.85	4.42	5.73	4.39	7.64	5.1	4.92	5.52	6.03	7.52
Merged-chr8-125198596-2	chr8	125198493	125198693	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	144398.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.65	6.29	6.28	14.88	11.86	37.63	20.93	21.36	1.18	1.51	0.0	0.63
Merged-chr11-116627790-1	chr11	116627690	116627890	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	-771.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	11.71	5.53	5.13	4.02	14.32	10.98	1.99	6.14	17.11	3.01	8.54	7.21
Merged-chr15-28412387-1	chr15	28412287	28412487	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133365, intron 65 of 78)	B4A|SINE|B4	208621.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	1.62	3.02	11.98	5.23	4.91	8.15	2.66	5.92	3.74	7.53	12.56	4.7
Merged-chr5-110598911-1	chr5	110598811	110599011	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198306, intron 5 of 10)	intron (NM_198306, intron 5 of 10)	-4594.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	3.63	6.04	0.0	6.84	5.32	13.8	3.32	6.39	3.74	7.53	5.02	3.13
Merged-chr19-5792281-1	chr19	5792181	5792381	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	3700.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	8.88	7.55	4.56	2.82	3.68	5.64	1.33	0.5	0.0	1.51	2.01	3.45
Merged-chr7-121450873-1	chr7	121450773	121450973	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	58577.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	1.62	3.02	3.42	4.02	8.59	1.25	3.32	6.98	12.98	2.01	7.54	1.88
Merged-chr10-17528489-1	chr10	17528389	17528589	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-194739.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.46	1.76	2.85	3.22	6.14	3.76	7.64	7.96	4.92	6.03	5.02	2.82
Merged-chr19-41274694-1	chr19	41274594	41274794	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 16 of 16)	ORR1A4|LTR|ERVL-MaLR	-10690.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.42	3.27	3.42	5.63	5.32	4.08	3.65	2.33	8.46	7.03	23.62	8.77
Merged-chr7-38004472-1	chr7	38004372	38004572	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	15080.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.4	3.52	8.56	7.64	3.27	5.96	10.63	9.03	2.95	0.0	3.01	1.25
Merged-chr2-45060647-2	chr2	45060558	45060758	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-37481.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	4.44	6.04	5.7	2.01	11.86	9.41	1.99	6.76	14.55	20.08	6.53	5.01
Merged-chr12-113042824-1	chr12	113042724	113042924	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	L1MC|LINE|L1	28316.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	1.62	1.51	2.28	2.82	3.68	2.2	5.31	5.61	3.54	2.01	7.03	4.07
Merged-chr8-83140234-1	chr8	83140134	83140334	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25118.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.08	4.78	3.42	7.64	6.55	6.9	12.29	8.5	5.9	7.53	6.03	4.7
Merged-chr4-86676134-1	chr4	86676034	86676234	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6075.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.63	0.5	0.0	2.41	0.82	1.25	1.66	1.88	8.06	12.05	11.56	7.52
Merged-chr10-111336482-1	chr10	111336382	111336582	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37803.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	3.63	0.75	5.13	4.42	11.86	6.9	7.64	6.17	2.95	3.51	3.52	2.51
Merged-chr13-94965258-3	chr13	94965133	94965333	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	7.27	9.31	11.98	3.22	13.91	7.21	4.65	8.41	15.54	6.53	20.6	6.89
Merged-chr10-13087403-1	chr10	13087303	13087503	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3385.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	4.04	6.29	0.0	8.45	9.41	4.39	1.66	7.71	9.44	7.03	6.53	4.7
Merged-chr9-118631773-3	chr9	118631654	118631854	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 3 of 27)	Lx5c|LINE|L1	25045.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.48	5.28	11.98	9.25	6.55	10.66	6.31	10.09	10.03	2.51	17.59	10.02
Merged-chr1-152042254-2	chr1	152042254	152042454	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	47966.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.04	3.02	1.14	5.23	6.55	4.08	6.64	5.52	2.36	2.01	8.04	5.01
Merged-chr2-174932890-1	chr2	174932790	174932990	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	134879.0	NM_001085546	664987.0		NM_001085546	ENSMUSG00000078905	Gm14393	-	predicted gene 14393	protein-coding	4.85	5.79	5.7	4.02	4.09	8.15	5.65	10.32	5.7	15.57	5.02	7.52
Merged-chr6-24663795-1	chr6	24663695	24663895	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	1200.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	3.23	5.03	1.14	2.41	4.5	6.27	9.3	3.22	9.44	3.51	9.04	8.14
Merged-chr19-18615996-1	chr19	18615896	18616096	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	B3A|SINE|B2	15817.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.81	1.01	0.0	2.01	2.86	3.45	7.97	5.44	7.08	5.02	6.53	5.01
Merged-chr5-28072920-1	chr5	28072820	28073020	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	1508.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	2.02	1.01	0.57	0.8	4.09	5.02	1.0	1.88	5.7	0.5	3.01	1.88
Merged-chr9-37656520-1	chr9	37656420	37656620	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	792.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	7.67	2.01	5.13	0.4	9.0	0.94	8.3	4.6	1.97	5.52	7.03	11.59
Merged-chr2-173703015-1	chr2	173702915	173703115	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_024436)	TTS (NM_024436)	-1867.0	NR_105758	102465173.0		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	0.0	0.75	0.57	1.61	4.91	5.64	1.33	8.21	0.59	0.0	1.0	0.63
Merged-chr4-123977163-1	chr4	123977063	123977263	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	59730.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.81	0.0	6.28	5.63	1.64	1.88	5.98	11.83	1.18	0.5	1.0	0.31
Merged-chr18-3888796-1	chr18	3888696	3888896	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	-277036.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	2.42	4.02	5.13	7.24	4.91	12.86	7.31	0.84	11.01	17.57	18.09	8.77
Merged-chr11-47075208-1	chr11	47075108	47075308	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	264409.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.46	3.02	1.14	5.63	4.09	5.33	3.99	5.41	7.87	3.01	10.05	2.51
Merged-chr4-6924936-2	chr4	6924866	6925066	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	65757.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	2.02	1.51	13.69	9.65	4.5	6.27	11.63	7.85	6.1	2.01	1.51	1.25
Merged-chr3-126669011-1	chr3	126668911	126669111	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	72060.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.0	0.25	0.0	0.0	0.0	0.0	0.0	0.06	8.26	4.52	13.06	4.7
Merged-chr13-56176063-1	chr13	56175963	56176163	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	2822.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	5.25	2.77	1.14	4.02	6.95	7.84	2.66	9.73	4.52	0.5	1.51	1.25
Merged-chr7-122317658-1	chr7	122317558	122317758	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	28533.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	9.29	7.29	2.28	7.24	6.55	11.6	8.97	4.23	9.24	5.52	13.57	5.01
Merged-chr12-35269200-1	chr12	35269100	35269300	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74303.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.62	1.51	2.28	1.21	7.77	3.76	1.33	1.65	12.59	6.03	17.59	8.77
Merged-chr6-34346796-3	chr6	34346682	34346882	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7364.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.85	6.29	14.26	6.03	10.64	12.23	7.97	10.88	9.24	10.04	19.09	3.45
Merged-chr11-75935944-2	chr11	75935844	75936044	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10053.0	NM_001291159	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	8.88	1.51	14.83	17.7	4.91	5.64	5.98	14.44	1.77	6.03	5.53	10.34
Merged-chr18-9744627-1	chr18	9744527	9744727	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	PB1D10|SINE|Alu	36979.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.85	2.77	7.99	2.01	1.64	5.33	1.0	7.85	1.97	1.0	4.02	0.94
Merged-chr11-87757782-1	chr11	87757682	87757882	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106176)	promoter-TSS (NR_106176)	-827.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	2.83	5.79	2.28	7.24	3.68	2.51	2.66	1.88	10.42	14.56	14.07	10.65
Merged-chr8-60867906-4	chr8	60867730	60867930	+	734.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22563.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.81	5.03	4.56	4.83	9.41	5.96	9.63	8.72	7.08	5.52	5.53	7.52
Merged-chr4-3511655-3	chr4	3511580	3511780	+	734.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25410.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	2.83	2.77	8.56	2.82	19.23	9.41	8.97	10.51	16.52	20.08	15.58	18.48
Merged-chr10-43021732-3	chr10	43021662	43021862	+	734.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175407, exon 6 of 7)	exon (NM_175407, exon 6 of 7)	-30600.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	6.46	6.04	6.85	6.84	10.64	7.53	9.3	7.35	17.11	10.04	16.08	12.22
Merged-chr2-33887293-3	chr2	33887152	33887352	+	734.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175184, intron 1 of 9)	CpG	694.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	6.86	5.53	3.99	6.84	8.18	9.09	10.3	8.94	8.26	18.08	12.06	9.08
Merged-chr10-117452349-3	chr10	117452252	117452452	+	734.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4917.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	10.5	13.83	3.99	14.48	4.5	4.7	5.65	6.39	13.96	11.05	9.04	12.22
Merged-chr6-137747720-3	chr6	137747622	137747822	+	734.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-6855.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	9.29	7.04	11.98	10.46	8.18	5.33	6.64	10.82	14.36	9.54	15.58	8.14
Merged-chr11-62749682-2	chr11	62749581	62749781	+	734.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20588.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	21.8	8.3	13.12	10.86	8.59	7.53	5.65	6.87	4.33	3.01	9.04	3.76
Merged-chr10-94223867-2	chr10	94223767	94223967	+	734.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24858.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	15.34	8.55	10.84	8.04	9.82	25.4	17.27	18.59	0.0	1.51	4.52	0.63
Merged-chr4-134761935-3	chr4	134761830	134762030	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6074.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	10.9	7.04	10.27	4.42	10.23	9.09	6.98	9.31	13.57	5.02	6.53	9.71
Merged-chr12-76534422-3	chr12	76534331	76534531	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	871.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	1.62	9.31	10.27	6.03	11.45	5.64	6.64	10.93	7.08	7.53	16.08	7.52
Merged-chr6-143142476-3	chr6	143142398	143142598	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	11433.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	8.08	6.04	1.14	10.46	4.91	10.98	14.62	23.97	6.88	9.54	3.52	5.95
Merged-chr6-128134715-3	chr6	128134625	128134825	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8853.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	8.48	8.05	14.83	6.44	15.14	11.6	12.29	12.5	9.83	11.55	11.56	6.27
Merged-chr12-84589924-3	chr12	84589838	84590038	+	734.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301427, intron 3 of 4)	CpG	20110.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	12.52	8.3	10.84	3.22	12.27	12.86	4.98	5.72	13.57	10.54	14.57	9.08
Merged-chr13-43772037-3	chr13	43771945	43772145	+	734.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13067.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.25	5.03	7.99	7.24	6.95	6.9	10.96	12.2	6.49	8.03	17.08	8.77
Merged-chr5-31200802-2	chr5	31200713	31200913	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175311, exon 3 of 4)	exon (NM_175311, exon 3 of 4)	1229.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	6.46	8.3	8.56	5.63	9.82	7.21	10.96	9.81	6.29	13.56	2.51	6.58
Merged-chr8-84210592-2	chr8	84210483	84210683	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172503)	TTS (NM_172503)	-1676.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	20.59	15.34	10.27	4.83	10.23	10.03	6.31	7.71	8.06	22.09	6.53	4.07
Merged-chr5-101999703-2	chr5	101999608	101999808	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70213.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.27	7.8	7.99	0.8	16.36	6.27	2.66	16.96	3.74	13.05	4.52	5.33
Merged-chr6-148615624-2	chr6	148615507	148615707	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1298.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	8.48	9.81	6.28	3.62	5.32	5.96	3.65	4.49	9.05	5.02	6.53	4.07
Merged-chr1-106376486-2	chr1	106376381	106376581	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 13 of 16)	intron (NM_133821, intron 13 of 16)	170150.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	8.08	3.27	3.99	15.69	11.45	5.64	7.97	14.44	6.69	8.54	19.09	4.39
Merged-chr16-32866878-3	chr16	32866768	32866968	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	1498.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	6.86	11.57	3.99	7.24	9.0	6.27	6.98	8.72	10.62	6.03	8.04	7.83
Merged-chr7-35067983-2	chr7	35067882	35068082	+	734.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11416.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.06	1.26	3.42	6.44	17.18	9.09	6.64	11.58	8.26	9.54	8.04	10.34
Merged-chr18-9444960-2	chr18	9444848	9445048	+	734.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 1 of 9)	MTC|LTR|ERVL-MaLR	5206.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.44	2.52	6.28	8.45	3.27	5.64	8.3	8.13	7.87	4.02	15.07	7.52
Merged-chr4-108454892-3	chr4	108454808	108455008	+	734.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4518.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	10.5	3.77	21.68	7.64	15.14	10.98	9.97	10.63	11.8	13.05	10.55	10.65
Merged-chr7-128298012-3	chr7	128297923	128298123	+	734.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145590, exon 1 of 13)	exon (NM_145590, exon 1 of 13)	108.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	14.13	10.31	7.99	6.44	12.68	6.9	11.29	9.67	8.26	21.59	15.58	7.83
Merged-chr19-42046039-3	chr19	42045910	42046110	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020033)	TTS (NM_020033)	159.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	7.67	6.04	8.56	7.64	7.77	9.72	1.33	8.41	3.34	14.56	4.02	9.4
Merged-chr1-77168978-1	chr1	77168878	77169078	+	734.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	327790.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.25	6.29	2.28	10.05	7.77	5.02	4.32	7.57	7.47	2.01	4.52	3.45
Merged-chr8-123361460-3	chr8	123361340	123361540	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172287, intron 10 of 14)	intron (NM_172287, intron 10 of 14)	-12271.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	7.27	9.31	7.42	8.45	7.77	10.66	6.98	7.68	9.05	4.02	8.04	6.89
Merged-chr6-34290313-1	chr6	34290213	34290413	+	734.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27130.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	2.42	2.52	3.42	4.02	9.0	5.33	7.97	10.01	6.69	5.52	7.03	2.82
Merged-chr5-147751814-3	chr5	147751697	147751897	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25809.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	11.31	10.31	5.7	8.04	2.86	9.41	8.3	5.75	12.39	16.07	10.05	8.14
Merged-chr4-12474375-1	chr4	12474275	12474475	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-302360.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	7.27	13.33	14.26	13.67	2.05	0.63	1.0	0.56	4.13	7.03	2.01	0.31
Merged-chr5-124021349-3	chr5	124021229	124021429	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	10931.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.65	8.55	9.13	5.23	8.59	8.78	3.65	17.3	12.39	7.03	8.54	7.83
Merged-chr11-45754036-2	chr11	45753931	45754131	+	734.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54052.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.42	3.52	4.56	2.82	8.59	8.47	3.99	10.23	9.64	5.02	7.03	6.89
Merged-chr1-39650330-2	chr1	39650229	39650429	+	734.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170597, intron 1 of 3)	intron (NM_170597, intron 1 of 3)	853.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	6.46	1.51	6.28	6.44	6.14	10.66	3.99	6.5	11.6	4.52	9.55	10.65
Merged-chr12-100169405-2	chr12	100169303	100169503	+	734.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9750.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	2.83	4.02	1.14	6.84	4.09	9.41	2.33	10.43	6.1	4.52	6.53	2.19
Merged-chr13-30986212-4	chr13	30986095	30986295	+	734.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12148.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	2.42	5.53	5.7	12.47	4.09	7.84	3.32	5.33	2.56	5.02	3.01	5.95
Merged-chr1-88695275-3	chr1	88695171	88695371	+	734.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6920.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	13.33	16.6	13.69	10.46	9.82	7.53	11.29	11.64	6.88	5.02	8.04	6.58
Merged-chr12-87299922-3	chr12	87299847	87300047	+	734.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290302)	promoter-TSS (NM_001290302)	-242.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	3.23	9.81	3.99	12.87	8.59	4.7	3.65	5.66	3.54	9.04	5.53	8.46
Merged-chr7-16229987-3	chr7	16229912	16230112	+	734.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7980.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	7.67	4.28	9.13	7.24	6.95	6.27	3.32	5.05	2.95	4.52	3.52	2.82
Merged-chr1-136633824-3	chr1	136633714	136633914	+	734.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8913.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	8.88	10.31	14.26	10.05	15.55	5.33	9.63	17.05	12.19	6.03	8.54	9.08
Merged-chr12-12270150-3	chr12	12270043	12270243	+	734.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	MTD|LTR|ERVL-MaLR	8004.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.46	7.29	7.99	9.65	17.18	10.98	4.32	15.79	15.54	8.54	10.05	8.77
Merged-chr6-134171068-2	chr6	134170978	134171178	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	C-rich|Low_complexity|Low_complexity	135378.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.23	5.28	5.13	7.64	11.45	7.21	1.99	7.54	19.47	8.03	11.05	5.33
Merged-chr10-121310967-2	chr10	121310858	121311058	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029057, exon 1 of 12)	5' UTR (NM_029057, exon 1 of 12)	438.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.04	7.55	0.57	3.22	9.82	8.47	9.97	14.3	5.11	8.54	6.03	5.33
Merged-chr10-60289441-2	chr10	60289364	60289564	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	5003.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.04	3.02	7.99	9.25	1.23	6.9	5.65	14.97	9.44	6.53	6.03	7.83
Merged-chr1-14823858-2	chr1	14823765	14823965	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67899.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.4	4.28	10.27	10.05	12.27	5.02	7.97	9.0	8.85	8.54	5.53	5.64
Merged-chr5-108694737-2	chr5	108694645	108694845	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054071, intron 1 of 6)	CpG	516.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	9.29	6.79	14.26	7.24	2.86	5.33	6.98	9.14	12.98	11.05	12.06	7.83
Merged-chr6-145075851-1	chr6	145075751	145075951	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	306.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.81	1.76	2.28	1.61	3.68	2.51	3.99	2.47	3.74	1.0	1.0	3.13
Merged-chr2-58933533-1	chr2	58933433	58933633	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	178349.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.65	1.01	3.42	1.61	8.18	4.7	7.31	12.98	2.56	4.02	3.52	4.39
Merged-chr4-83271612-1	chr4	83271512	83271712	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	URR1A|DNA|hAT-Charlie	52577.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	1.51	4.56	3.22	7.36	3.76	3.32	9.08	4.72	0.0	0.0	1.57
Merged-chrX-20387181-1	chrX	20387081	20387281	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290643, intron 3 of 5)	L1MD3|LINE|L1	22700.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	0.81	6.29	3.42	2.41	1.23	5.64	2.99	5.8	1.18	6.53	4.02	6.27
Merged-chr17-29099176-1	chr17	29099076	29099276	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111099, intron 2 of 2)	B3A|SINE|B2	5407.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	1.62	1.26	0.0	0.0	2.86	5.64	8.3	6.36	1.38	0.0	3.01	1.88
Merged-chr5-121660123-1	chr5	121660023	121660223	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	387.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	6.46	4.28	8.56	0.4	4.09	10.03	5.98	5.47	6.88	1.51	4.52	4.7
Merged-chr10-80175648-1	chr10	80175548	80175748	+	734.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027207)	TTS (NM_027207)	2704.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	2.83	3.02	2.28	10.46	4.09	8.47	4.32	2.19	8.65	5.02	12.06	10.96
Merged-chr6-134433472-3	chr6	134433383	134433583	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	19055.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.67	7.29	20.54	14.08	6.55	5.64	0.66	8.92	13.37	7.53	23.62	13.78
Merged-chr2-129369118-2	chr2	129369006	129369206	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-796.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	12.52	4.78	1.14	0.0	7.36	6.59	1.99	2.78	8.85	23.6	5.53	4.7
Merged-chr8-124007717-3	chr8	124007627	124007827	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357315, intron 3 of 4)	RMER16|LTR|ERVK	13329.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	13.73	7.29	10.84	8.85	10.64	6.9	6.98	14.47	12.78	13.56	14.07	7.21
Merged-chr1-106957845-1	chr1	106957745	106957945	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001199213)	TTS (NM_001199213)	18888.0	NM_001199213	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	3.63	4.53	5.7	8.04	3.27	6.59	8.64	6.2	5.11	1.0	11.56	4.07
Merged-chr2-142703115-2	chr2	142703019	142703219	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 22 of 26)	L1MA4A|LINE|L1	198345.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	3.52	1.14	3.22	4.09	8.15	3.65	7.88	11.41	4.02	6.53	8.14
Merged-chr7-112233564-2	chr7	112233498	112233698	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	7762.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.83	4.28	11.41	5.63	7.36	3.76	8.3	11.47	0.0	0.5	1.51	0.0
Merged-chr9-5334540-2	chr9	5334446	5334646	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-10930.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	8.08	7.29	2.28	1.21	13.91	9.41	5.98	3.36	10.62	6.03	8.04	3.13
Merged-chr2-109431042-1	chr2	109430942	109431142	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	150304.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	1.21	1.01	9.7	2.41	5.73	6.27	7.31	7.43	1.57	6.03	5.02	2.82
Merged-chr9-104306953-2	chr9	104306854	104307054	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019807, exon 9 of 11)	exon (NM_019807, exon 9 of 11)	30768.0	NM_019807	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	4.85	3.52	3.42	6.44	4.5	7.21	3.32	5.61	22.23	8.03	8.54	8.77
Merged-chr7-107519566-2	chr7	107519450	107519650	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021889, intron 6 of 6)	intron (NM_021889, intron 6 of 6)	-47883.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	8.48	4.78	7.99	5.23	8.59	5.96	8.3	18.0	8.85	4.02	5.53	9.71
Merged-chr2-152724141-2	chr2	152724035	152724235	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12116.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.63	12.07	7.99	11.26	11.05	11.29	1.66	7.01	7.28	8.54	21.61	4.7
Merged-chr7-80919097-3	chr7	80918994	80919194	+	734.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019951, intron 4 of 5)	intron (NM_019951, intron 4 of 5)	-14032.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	7.67	8.3	10.27	9.65	13.09	10.66	6.31	12.06	10.23	9.04	20.1	7.21
Merged-chr3-130761131-2	chr3	130760959	130761159	+	734.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30661.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.04	3.52	4.56	8.04	3.68	5.64	2.99	5.19	2.75	6.03	7.54	4.39
Merged-chrX-6854361-2	chrX	6854262	6854462	+	734.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19122.0	NM_177914	331374.0	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	9.69	7.04	9.13	11.26	11.45	15.37	7.64	23.89	7.08	1.51	2.51	1.25
Merged-chr12-71808224-2	chr12	71808121	71808321	+	734.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22847.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	1.62	1.01	1.14	7.24	12.68	14.74	4.32	7.29	11.41	9.54	11.05	9.4
Merged-chr17-48278548-2	chr17	48278432	48278632	+	734.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	14237.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	2.42	3.52	13.12	11.26	5.32	7.21	7.97	7.91	3.34	5.52	4.02	4.39
Merged-chr11-106789939-2	chr11	106789860	106790060	+	734.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355677)	promoter-TSS (NM_001355677)	708.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	8.88	9.81	3.99	4.02	6.14	5.33	11.96	7.04	10.23	6.03	7.54	6.27
Merged-chr18-38239398-2	chr18	38239298	38239498	+	734.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027904, intron 1 of 1)	CpG	10800.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	10.9	3.52	0.0	2.82	11.05	9.41	2.33	11.89	9.44	9.04	20.6	4.07
Merged-chr12-75694621-2	chr12	75694524	75694724	+	734.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-25087.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	2.02	2.52	9.7	6.44	10.64	7.53	10.3	13.26	12.39	3.51	5.53	7.21
Merged-chr7-67672853-2	chr7	67672734	67672934	+	734.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168477)	TTS (NM_001168477)	25424.0	NM_001360653	67009.0	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	9.29	7.04	2.28	4.02	5.32	10.98	6.31	11.07	8.85	4.52	8.54	10.96
Merged-chr16-4939556-1	chr16	4939456	4939656	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	29.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	4.44	8.55	1.14	6.03	5.32	7.53	7.64	8.07	5.9	8.54	15.58	6.89
Merged-chr16-4840454-3	chr16	4840369	4840569	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	5053.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	12.11	4.53	13.69	12.07	10.23	3.45	12.29	6.7	9.83	7.03	8.54	8.46
Merged-chr7-45481528-1	chr7	45481428	45481628	+	734.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027903, intron 4 of 6)	intron (NM_027903, intron 4 of 6)	-4734.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	6.46	5.53	1.14	3.22	5.32	7.84	2.99	4.26	11.8	8.03	14.57	3.76
Merged-chr13-30981844-1	chr13	30981744	30981944	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7797.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	5.65	5.28	3.99	6.44	4.91	8.78	6.64	7.46	6.88	3.01	14.07	8.14
Merged-chr6-134997095-3	chr6	134996971	134997171	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14541.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	9.29	7.8	9.13	8.04	12.27	9.72	3.32	6.06	13.77	20.08	14.57	9.08
Merged-chr4-138041383-1	chr4	138041283	138041483	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43558.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.42	2.01	0.57	4.42	6.55	0.0	8.3	7.21	1.57	1.51	4.52	2.51
Merged-chr6-84032786-3	chr6	84032697	84032897	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	RLTR19-int|LTR|ERVK	13411.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	10.09	4.02	17.11	10.46	8.59	5.02	8.64	8.24	8.65	2.51	17.08	9.4
Merged-chr1-45919181-1	chr1	45919081	45919281	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	6413.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.81	3.02	2.28	1.21	1.23	1.25	3.32	1.96	2.16	0.0	3.52	3.76
Merged-chr14-63413696-3	chr14	63413590	63413790	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	3497.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	10.09	4.28	11.41	15.28	14.32	8.78	9.97	17.36	10.42	4.52	8.54	6.27
Merged-chr12-35076161-3	chr12	35076062	35076262	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	28973.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.81	5.28	7.42	12.07	3.68	6.27	0.0	6.62	26.95	22.59	25.63	27.57
Merged-chr3-109196360-3	chr3	109196258	109196458	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73209.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	8.88	4.02	11.98	11.26	4.09	11.29	5.65	5.52	10.03	14.56	9.55	7.52
Merged-chr11-120597829-4	chr11	120597654	120597854	+	734.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025389)	promoter-TSS (NM_025389)	611.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	8.08	6.04	14.26	10.05	4.91	7.53	5.98	6.45	12.19	8.54	11.56	8.46
Merged-chr10-122562146-2	chr10	122562044	122562244	+	734.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7747.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.65	6.54	6.85	6.84	9.41	9.72	14.62	15.53	8.06	11.55	21.1	8.77
Merged-chr10-130129186-3	chr10	130129088	130129288	+	734.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2133.0	NM_146674	258669.0	Mm.377631	NM_146674	ENSMUSG00000095804	Olfr824	MOR210-3	olfactory receptor 824	protein-coding	8.88	12.07	10.27	6.44	18.41	11.92	8.3	28.77	11.41	11.55	10.05	11.9
Merged-chr12-80895344-3	chr12	80895221	80895421	+	734.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29126.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	8.08	7.04	9.13	6.44	7.36	15.05	8.64	10.91	12.59	8.03	12.06	6.89
Merged-chr9-106226381-3	chr9	106226275	106226475	+	734.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	3777.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	7.27	9.06	10.84	6.44	8.59	12.86	11.63	10.91	20.65	11.55	14.07	6.89
Merged-chr3-52103853-3	chr3	52103726	52103926	+	734.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001004176, exon 1 of 5)	exon (NM_001004176, exon 1 of 5)	1180.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	8.88	10.31	6.28	14.08	11.05	9.09	6.98	8.44	5.31	7.53	6.03	10.34
Merged-chr18-5123864-3	chr18	5123753	5123953	+	734.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41878.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	14.94	5.53	14.83	10.05	6.55	5.02	4.65	9.84	10.82	7.53	2.51	11.9
Merged-chr2-91091628-2	chr2	91091525	91091725	+	734.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5053.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	3.23	0.5	3.42	8.04	7.77	6.9	7.97	10.26	10.03	10.54	8.54	2.51
Merged-chrUn_JH584304-81261-1	chrUn_JH584304	81161	81361	+	734.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21572.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	63.73	48.7	47.23	80.2
Merged-chr10-20753079-2	chr10	20752983	20753183	+	734.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28005.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	9.69	6.54	13.69	3.22	1.64	11.29	1.33	7.63	8.26	7.53	7.54	5.64
Merged-chr13-111807275-2	chr13	111807207	111807407	+	734.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1686.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	12.52	6.54	12.55	6.84	8.18	8.47	12.95	9.64	14.95	8.54	6.53	7.21
Merged-chr13-105306151-2	chr13	105306069	105306269	+	734.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11684.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	11.31	2.52	3.42	11.66	7.36	8.15	9.3	13.23	6.49	9.04	10.55	9.08
Merged-chr11-97700420-3	chr11	97700263	97700463	+	734.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163307)	promoter-TSS (NM_001163307)	134.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	12.52	5.79	1.71	7.24	15.55	10.03	5.98	6.5	9.64	6.03	10.05	10.02
Merged-chr7-79786409-3	chr7	79786242	79786442	+	734.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037927)	TTS (NM_001037927)	7248.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	4.85	5.53	12.55	4.83	7.77	0.31	5.31	3.59	10.82	13.05	5.53	4.39
Merged-chr9-104243997-3	chr9	104243888	104244088	+	734.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	18942.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	10.09	1.76	11.98	3.62	6.95	16.31	7.64	8.78	9.44	9.04	11.05	5.64
Merged-chr2-163712845-2	chr2	163712788	163712988	+	734.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	18851.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	7.27	3.02	7.42	6.03	14.32	5.02	7.64	10.35	5.51	5.02	3.52	4.07
Merged-chr17-85023715-2	chr17	85023608	85023808	+	734.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159497, exon 6 of 6)	exon (NM_001159497, exon 6 of 6)	-4639.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	6.86	7.29	9.7	4.83	6.95	7.53	4.65	7.04	10.82	18.58	7.54	11.59
Merged-chr14-60910953-2	chr14	60910856	60911056	+	734.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126390.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	2.42	6.79	12.55	2.01	18.0	6.9	8.97	9.31	8.06	7.53	11.56	6.89
Merged-chr9-47644467-2	chr9	47644369	47644569	+	734.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	114117.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	8.08	10.06	34.8	6.44	10.64	13.17	8.64	16.46	10.03	7.03	8.54	11.9
Merged-chr1-157416783-3	chr1	157416694	157416894	+	734.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-4199.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	12.11	7.8	8.56	8.45	4.5	5.02	9.63	10.09	10.62	10.54	9.55	7.52
Merged-chr14-54476092-2	chr14	54475988	54476188	+	734.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080726)	promoter-TSS (NM_080726)	-12.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	5.25	11.82	6.28	4.02	8.18	11.6	10.63	5.24	12.78	19.08	12.56	4.07
Merged-chr2-128753618-2	chr2	128753496	128753696	+	734.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 6 of 18)	ID_B1|SINE|B4	54681.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	2.83	4.78	5.7	8.45	11.05	6.59	10.63	11.36	7.28	2.51	9.55	9.08
Merged-chr13-100849317-3	chr13	100849225	100849425	+	734.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-15898.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	7.67	10.31	6.85	3.62	11.05	30.42	7.31	5.13	19.87	13.56	24.62	6.27
Merged-chr2-72464537-3	chr2	72464467	72464667	+	734.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-11652.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	11.31	4.78	15.97	6.44	4.5	12.23	6.64	7.01	15.14	14.06	14.07	5.95
Merged-chr10-88351875-2	chr10	88351773	88351973	+	734.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	5202.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	1.62	5.53	2.85	0.4	10.64	10.03	6.98	10.88	10.62	13.56	14.07	9.08
Merged-chr5-97320306-3	chr5	97320202	97320402	+	734.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	72028.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	5.25	3.77	11.41	14.08	4.09	8.15	13.29	15.48	13.57	6.03	11.56	19.11
Merged-chr10-30408879-3	chr10	30408781	30408981	+	734.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	191819.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	8.88	6.04	5.7	18.9	7.77	13.17	7.64	15.39	12.78	5.02	11.56	9.4
Merged-chr16-38603592-1	chr16	38603492	38603692	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020260, exon 12 of 12)	exon (NM_020260, exon 12 of 12)	40778.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	2.42	0.5	1.14	6.84	0.82	6.9	4.32	7.21	0.59	0.5	5.53	3.13
Merged-chr16-19973073-1	chr16	19972973	19973173	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9976.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	6.46	3.52	3.99	6.84	6.55	3.45	4.32	7.09	2.95	8.54	3.01	2.51
Merged-chr15-79441144-1	chr15	79441044	79441244	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	674.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.25	7.29	0.0	6.03	9.82	6.9	2.66	4.79	6.49	4.52	8.54	7.52
Merged-chr2-168593172-1	chr2	168593072	168593272	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	-2807.0	NM_001136073	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.25	4.78	0.0	4.83	7.36	0.63	0.66	5.27	1.38	2.51	1.51	3.45
Merged-chr14-57701998-3	chr14	57701900	57702100	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 3 of 7)	intron (NM_015771, intron 3 of 7)	32418.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	10.9	5.53	14.26	1.61	4.5	10.03	3.32	13.04	8.65	11.55	11.56	5.33
Merged-chr16-95710294-2	chr16	95710198	95710398	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011809, intron 3 of 9)	intron (NM_011809, intron 3 of 9)	7891.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.08	12.32	5.13	2.01	8.59	10.35	1.33	1.57	8.26	10.04	2.01	6.27
Merged-chr10-81140803-2	chr10	81140699	81140899	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4528.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	5.65	7.8	4.56	2.82	3.27	3.45	10.3	8.89	9.24	5.02	11.56	7.21
Merged-chr10-42464401-1	chr10	42464301	42464501	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359297, intron 1 of 11)	L2c|LINE|L2	14164.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	4.04	2.77	5.7	6.84	8.59	8.15	3.99	6.48	2.75	4.02	8.04	2.19
Merged-chr12-12318343-1	chr12	12318243	12318443	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	56204.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.63	1.01	2.28	2.41	8.18	6.27	3.65	6.36	4.92	5.02	2.01	9.4
Merged-chr11-21237925-2	chr11	21237812	21238012	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1120.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.04	7.04	14.83	11.26	11.05	3.14	4.65	6.0	11.8	7.03	5.53	8.14
Merged-chr6-71437120-1	chr6	71437020	71437220	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	3517.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	1.62	1.26	0.0	1.61	0.82	10.03	1.0	3.25	0.98	2.01	3.01	2.51
Merged-chrX-158234296-1	chrX	158234196	158234396	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-191099.0	NM_177751	245684.0	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	1.62	4.53	5.7	7.64	1.64	1.25	9.63	6.87	7.67	5.02	3.52	2.51
Merged-chr10-91185135-1	chr10	91185035	91185235	+	734.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-13516.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.85	4.28	3.42	0.8	3.27	4.39	2.33	1.63	9.05	5.02	10.55	2.82
Merged-chr6-100150978-1	chr6	100150878	100151078	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	136380.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.86	2.01	9.13	4.02	5.73	6.59	6.31	5.94	7.47	5.52	7.03	12.22
Merged-chr8-71591403-1	chr8	71591303	71591503	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-781.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	4.44	3.77	5.7	0.4	0.41	1.25	4.98	0.81	7.47	3.01	2.01	3.13
Merged-chr13-36116867-1	chr13	36116767	36116967	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	490.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	2.42	2.52	2.28	6.03	5.32	2.82	8.64	5.78	4.92	3.01	3.01	2.51
Merged-chrX-13306397-2	chrX	13306293	13306493	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	25371.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	6.86	2.77	10.27	9.65	7.36	13.48	15.94	22.26	4.72	6.03	8.54	9.08
Merged-chr19-41278683-2	chr19	41278585	41278785	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14681.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	8.08	7.04	7.42	12.47	4.91	4.7	8.97	6.39	2.56	3.51	6.03	2.82
Merged-chr7-30992356-1	chr7	30992256	30992456	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10435.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.85	2.26	1.14	3.62	3.68	6.59	2.33	7.65	3.34	0.0	5.53	3.76
Merged-chr11-95584203-1	chr11	95584103	95584303	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033217, intron 1 of 5)	intron (NM_033217, intron 1 of 5)	3495.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	12.52	3.77	17.11	12.47	1.64	0.63	0.0	1.01	1.97	2.51	3.01	0.63
Merged-chr6-53455657-1	chr6	53455557	53455757	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-117717.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	1.01	6.28	2.01	4.09	5.96	9.63	7.99	1.38	3.01	12.06	2.82
Merged-chr6-65141092-2	chr6	65140984	65141184	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	3646.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.23	4.02	3.42	12.07	3.27	4.08	6.98	12.36	6.29	4.52	7.03	4.07
Merged-chr3-52199532-1	chr3	52199432	52199632	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68805.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.06	3.02	1.14	4.02	15.55	7.84	1.66	7.18	6.29	7.03	1.51	7.83
Merged-chr8-90930342-1	chr8	90930242	90930442	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-1907.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.62	2.52	5.7	2.41	9.0	13.17	1.66	7.65	13.77	4.02	5.53	2.19
Merged-chrX-37126858-2	chrX	37126755	37126955	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025937)	promoter-TSS (NM_025937)	92.0	NM_025937	67050.0	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	7.67	2.77	1.14	6.03	4.91	12.23	4.98	4.93	9.24	7.03	8.54	7.52
Merged-chr19-29237241-1	chr19	29237141	29237341	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14562.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.27	2.52	0.0	2.01	3.27	7.21	5.31	6.53	5.51	5.02	2.51	3.13
Merged-chr4-43726794-1	chr4	43726694	43726894	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027511)	promoter-TSS (NM_027511)	-404.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	4.85	0.75	3.42	1.61	0.82	5.33	10.96	6.98	1.77	0.0	1.0	0.0
Merged-chr14-17933762-1	chr14	17933662	17933862	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-47882.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.25	0.0	2.41	0.82	2.51	5.31	6.59	1.18	1.0	1.0	0.0
Merged-chr8-125487156-1	chr8	125487056	125487256	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	5677.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	12.52	2.52	3.99	0.8	7.77	2.51	2.99	1.6	3.54	2.51	3.52	2.51
Merged-chr13-56712366-2	chr13	56712276	56712476	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	8708.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	6.46	6.54	3.99	13.27	7.36	5.02	2.33	11.41	6.69	9.54	15.58	8.46
Merged-chr15-68394940-1	chr15	68394840	68395040	+	734.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53651.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	4.44	5.53	3.42	3.22	3.68	6.27	1.33	3.42	6.1	7.53	16.58	10.34
Merged-chr5-89051812-1	chr5	89051712	89051912	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359212, intron 3 of 22)	intron (NM_001359212, intron 3 of 22)	23846.0	NM_001359213	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	2.42	4.02	0.0	4.02	1.64	0.94	5.31	2.97	1.77	3.01	2.51	1.88
Merged-chr14-16564046-1	chr14	16563946	16564146	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289761, intron 2 of 8)	MTD|LTR|ERVL-MaLR	11430.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	7.27	4.28	12.55	10.05	0.0	3.76	3.65	1.96	0.0	1.0	1.0	0.94
Merged-chr17-74811049-3	chr17	74810940	74811140	+	733.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	93290.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	9.69	5.79	18.83	1.61	11.45	10.98	5.65	8.75	12.98	17.57	26.13	8.77
Merged-chr2-71939123-2	chr2	71938998	71939198	+	733.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42117.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	5.25	4.28	2.28	8.45	6.14	7.53	2.99	4.68	13.57	9.04	14.57	5.01
Merged-chr2-160356390-3	chr2	160356297	160356497	+	733.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	10668.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	7.67	15.09	10.27	4.02	12.68	21.95	10.3	6.22	6.49	10.54	4.02	3.76
Merged-chr2-127251856-3	chr2	127251747	127251947	+	733.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175145, intron 2 of 3)	intron (NM_175145, intron 2 of 3)	3872.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	10.9	14.09	14.83	7.64	11.45	13.8	3.65	6.11	15.34	9.54	9.55	10.34
Merged-chr2-91986261-3	chr2	91986176	91986376	+	733.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011957, exon 10 of 12)	exon (NM_011957, exon 10 of 12)	-22713.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	8.88	3.27	7.99	11.26	7.77	1.57	5.31	8.55	8.46	5.02	12.56	12.22
Merged-chr4-58986897-3	chr4	58986810	58987010	+	733.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	168.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	6.86	6.79	4.56	7.64	8.18	9.09	4.32	4.6	6.1	4.02	4.52	4.07
Merged-chr4-133056714-3	chr4	133056576	133056776	+	733.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45170.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	10.9	7.29	8.56	3.22	8.18	12.54	8.3	5.58	6.88	7.53	10.05	6.27
Merged-chr7-98383045-2	chr7	98382942	98383142	+	733.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21714.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.65	2.52	5.13	7.64	10.64	3.76	6.31	9.03	8.26	4.52	12.06	10.96
Merged-chr7-120871537-2	chr7	120871434	120871634	+	733.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	MLT1A|LTR|ERVL-MaLR	20345.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	8.88	10.31	15.4	12.47	8.18	4.08	2.99	6.25	3.54	4.52	8.04	11.59
Merged-chr12-57237223-3	chr12	57237120	57237320	+	733.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	Lx9|LINE|L1	6795.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.04	7.29	10.84	8.45	7.36	7.21	9.63	19.99	11.21	4.52	14.57	7.21
Merged-chr3-95957576-3	chr3	95957469	95957669	+	733.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27941.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	1.21	6.29	11.41	15.28	16.36	10.98	6.64	11.27	12.78	13.05	11.05	6.89
Merged-chrX-103616295-2	chrX	103616206	103616406	+	733.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028380, intron 1 of 10)	IMPB_01|Satellite|Satellite	7448.0	NR_028381	78878.0	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	2.02	6.04	7.99	6.44	8.59	8.15	9.63	2.55	14.16	13.05	12.06	4.07
Merged-chr6-87742230-2	chr6	87742134	87742334	+	733.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	MTD|LTR|ERVL-MaLR	11365.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	5.65	3.02	5.13	4.02	6.95	7.53	3.99	9.25	9.83	2.51	3.52	7.83
Merged-chr11-50099068-2	chr11	50098978	50099178	+	733.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	29376.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	6.46	3.27	14.83	6.44	8.18	5.96	13.62	15.95	10.23	7.53	10.05	10.65
Merged-chr4-150546892-2	chr4	150546794	150546994	+	733.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	105280.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.67	6.79	10.27	8.45	9.82	5.64	8.64	13.12	2.75	1.0	6.03	3.76
Merged-chr6-32328269-1	chr6	32328169	32328369	+	733.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-182872.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	8.48	1.76	7.42	0.8	15.96	12.86	6.64	6.98	5.11	7.53	8.54	5.64
Merged-chr19-5407337-2	chr19	5407234	5407434	+	733.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027938, intron 1 of 3)	B3|SINE|B2	519.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	10.5	4.78	7.99	2.01	7.36	14.74	3.32	7.37	22.82	11.55	15.07	19.11
Merged-chr4-46344439-3	chr4	46344344	46344544	+	733.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183298, exon 1 of 1)	exon (NM_183298, exon 1 of 1)	250.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	14.13	6.54	11.98	8.85	13.91	10.03	11.63	7.26	10.42	9.54	17.08	8.46
Merged-chr11-86908478-3	chr11	86908396	86908596	+	733.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur2|LINE|L1	85266.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.67	10.56	5.7	1.61	9.0	21.01	5.98	2.41	15.93	14.06	17.59	7.52
Merged-chr7-81763681-3	chr7	81763573	81763773	+	733.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025997, intron 1 of 2)	B3A|SINE|B2	720.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	7.27	6.79	1.71	6.44	0.82	10.66	8.64	3.03	12.0	13.05	16.08	8.46
Merged-chr14-33158480-3	chr14	33158367	33158567	+	733.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	26599.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	5.65	9.31	10.84	9.25	14.73	13.17	8.3	9.25	11.01	18.58	11.05	5.33
Merged-chr9-35115576-2	chr9	35115494	35115694	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1134.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.21	2.01	2.28	4.83	2.05	13.17	5.65	6.14	6.49	6.53	15.58	4.39
Merged-chr11-116142777-2	chr11	116142655	116142855	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172571, exon 31 of 31)	3' UTR (NM_172571, exon 31 of 31)	-3887.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	7.27	5.53	5.7	1.61	13.09	13.17	4.98	8.44	4.72	10.54	13.57	6.58
Merged-chr11-79398591-2	chr11	79398482	79398682	+	733.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010897, intron 5 of 57)	Lx8|LINE|L1	58690.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	9.69	13.83	3.99	2.82	9.41	10.03	4.32	5.1	7.67	16.07	11.56	3.76
Merged-chrX-143321552-2	chrX	143321449	143321649	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358592, intron 6 of 11)	intron (NM_001358592, intron 6 of 11)	72713.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	2.83	2.52	5.7	3.62	6.55	8.47	2.99	10.68	8.85	4.52	23.62	9.08
Merged-chrX-99092870-3	chrX	99092764	99092964	+	733.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-43197.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	14.94	10.82	9.13	5.23	4.5	8.15	5.31	4.09	6.69	13.05	17.08	14.41
Merged-chr10-80596280-3	chr10	80596170	80596370	+	733.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5929.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	4.44	6.29	14.26	11.66	11.45	10.98	6.98	6.34	17.31	11.05	12.06	11.59
Merged-chr13-94164528-1	chr13	94164428	94164628	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	106732.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.42	4.02	7.42	6.03	9.0	9.41	7.97	8.72	1.77	1.0	3.52	2.51
Merged-chr10-127292206-3	chr10	127292094	127292294	+	733.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	1401.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	9.29	6.79	7.42	4.42	5.32	8.47	3.99	8.21	9.83	8.03	5.02	9.08
Merged-chr6-116108141-3	chr6	116108033	116108233	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85241.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	8.48	7.29	10.27	10.05	9.82	20.07	8.3	10.54	10.23	7.03	3.52	7.83
Merged-chr9-118506942-3	chr9	118506821	118507021	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018748, intron 1 of 23)	CpG	603.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	3.63	8.05	3.99	2.41	3.68	2.82	4.98	5.33	11.6	10.54	3.01	12.84
Merged-chr16-17686819-1	chr16	17686719	17686919	+	733.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	36081.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.65	4.02	2.28	13.27	6.95	5.96	9.3	11.19	2.36	1.0	5.53	3.13
Merged-chr2-102757364-3	chr2	102757276	102757476	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-10616.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	8.48	7.29	7.99	10.05	11.86	11.92	9.3	5.8	14.95	12.05	12.56	11.9
Merged-chr6-72101053-3	chr6	72100870	72101070	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3362.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.06	6.29	3.99	10.46	7.36	5.02	13.95	14.69	6.29	2.51	6.03	2.19
Merged-chr2-167537642-1	chr2	167537542	167537742	+	733.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-553.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	10.5	11.07	2.85	4.02	8.59	7.53	3.32	6.67	9.44	6.53	7.54	3.13
Merged-chr12-118847131-3	chr12	118847036	118847236	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177082, intron 1 of 2)	CpG	807.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	17.77	7.55	7.42	5.63	2.86	5.02	4.65	5.02	12.78	4.52	8.54	5.01
Merged-chr15-41657272-2	chr15	41657166	41657366	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-131729.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	8.08	9.06	6.28	12.07	9.82	9.41	6.31	13.96	4.72	10.54	8.54	5.01
Merged-chr15-68066854-2	chr15	68066752	68066952	+	733.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	192004.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.42	2.52	3.42	1.61	6.14	5.02	3.65	8.33	7.87	1.0	12.56	9.08
Merged-chr17-33902654-2	chr17	33902522	33902722	+	733.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2513.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	3.63	5.79	7.42	2.41	6.55	5.64	8.3	4.54	6.49	8.54	8.54	6.58
Merged-chr18-75392538-2	chr18	75392450	75392650	+	733.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	25185.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	6.86	13.33	6.28	6.84	10.64	11.6	9.63	8.66	7.08	7.03	15.07	4.7
Merged-chr6-52401638-3	chr6	52401544	52401744	+	733.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86812.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	9.69	8.05	7.99	14.48	15.55	15.68	9.3	25.01	8.65	8.54	15.58	3.76
Merged-chr9-15685390-3	chr9	15685291	15685491	+	733.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24347.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	8.08	5.28	4.56	8.85	8.18	9.72	10.96	15.76	12.98	7.53	12.56	7.52
Merged-chr10-69218647-3	chr10	69218519	69218719	+	733.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	5425.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	2.42	4.02	18.25	8.04	3.68	4.39	2.66	7.46	7.87	9.54	12.06	13.78
Merged-chr8-109691847-3	chr8	109691750	109691950	+	733.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 1 of 10)	RSINE1|SINE|B4	1444.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	10.09	7.29	17.11	9.25	6.55	9.72	8.3	4.09	30.88	11.55	19.6	5.33
Merged-chr7-19088982-3	chr7	19088861	19089061	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001190491, exon 9 of 13)	exon (NM_001190491, exon 9 of 13)	2133.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	2.83	3.52	8.56	11.26	12.27	8.78	4.65	6.45	15.74	12.55	19.09	19.74
Merged-chr11-100712388-3	chr11	100712251	100712451	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020004, exon 1 of 18)	exon (NM_020004, exon 1 of 18)	116.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	5.65	7.04	1.71	6.84	6.14	7.53	3.32	5.38	8.65	6.03	5.53	4.07
Merged-chr2-145830162-3	chr2	145830041	145830241	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	ID4|SINE|ID	44025.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	11.31	8.3	15.4	8.85	4.09	8.15	15.28	15.03	8.06	9.04	6.03	10.96
Merged-chr3-83812167-3	chr3	83812063	83812263	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29445.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.65	9.06	9.7	14.48	19.23	7.21	9.63	18.53	12.78	5.52	11.05	7.52
Merged-chr10-8881097-2	chr10	8880990	8881190	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4980.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.27	10.06	3.42	7.64	9.82	13.17	7.97	4.82	13.18	9.04	12.56	6.27
Merged-chr18-66073199-3	chr18	66073110	66073310	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178793, intron 6 of 10)	intron (NM_178793, intron 6 of 10)	-70575.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	10.09	3.27	18.83	9.25	9.0	7.53	9.3	10.63	4.72	3.51	13.06	8.77
Merged-chr6-145860554-1	chr6	145860454	145860654	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_024469, exon 5 of 5)	3' UTR (NM_024469, exon 5 of 5)	4866.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	2.02	1.51	0.57	6.44	7.77	6.9	7.97	17.38	1.18	3.01	3.01	3.13
Merged-chr6-148523093-1	chr6	148522993	148523193	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78741.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	2.83	1.51	1.14	4.02	7.36	7.53	1.66	5.94	3.74	2.51	5.02	1.88
Merged-chr10-116893993-1	chr10	116893893	116894093	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033333, intron 1 of 24)	intron (NM_001033333, intron 1 of 24)	2886.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	4.04	3.77	2.28	6.44	17.18	5.33	4.65	7.85	16.33	2.51	9.04	5.01
Merged-chr15-63606086-2	chr15	63605980	63606180	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126472.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.06	2.77	14.83	11.66	8.59	1.88	4.32	10.85	5.31	5.52	15.58	2.51
Merged-chr9-41212857-2	chr9	41212743	41212943	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040392, intron 2 of 4)	intron (NR_040392, intron 2 of 4)	6688.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	5.65	2.26	1.14	1.61	3.68	6.27	3.32	3.87	13.57	19.08	15.07	10.02
Merged-chr4-149001700-1	chr4	149001600	149001800	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 3 of 8)	intron (NM_019781, intron 3 of 8)	-49378.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	2.42	6.04	8.56	4.02	4.09	6.59	5.65	5.64	2.95	9.04	10.55	5.64
Merged-chr17-35232897-1	chr17	35232797	35232997	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2113.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	4.04	5.53	7.99	3.22	3.68	4.08	5.65	7.88	7.47	3.51	9.04	3.45
Merged-chr3-127923397-1	chr3	127923297	127923497	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040552, intron 1 of 4)	intron (NR_040552, intron 1 of 4)	7226.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	8.08	3.27	2.85	4.02	8.59	4.39	7.31	6.64	2.16	3.01	2.51	9.4
Merged-chrX-105884682-2	chrX	105884586	105884786	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 5 of 34)	intron (NM_009530, intron 5 of 34)	44686.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	6.06	2.26	10.84	10.05	6.55	4.08	2.33	15.11	16.72	6.53	17.08	5.01
Merged-chr14-20067512-3	chr14	20067426	20067626	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15646.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	7.27	9.56	9.13	7.24	9.41	5.02	6.64	12.56	11.6	17.57	16.08	8.46
Merged-chr1-172003656-1	chr1	172003556	172003756	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	23639.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	9.29	4.02	0.57	6.84	9.82	6.27	0.66	8.41	5.51	4.02	6.53	2.51
Merged-chr1-92225449-2	chr1	92225351	92225551	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45110.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.81	3.02	2.28	4.83	7.36	12.86	10.3	5.97	6.88	8.54	11.56	6.89
Merged-chr16-94546032-2	chr16	94545914	94546114	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19385.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	1.62	7.04	1.14	3.22	6.14	7.84	1.99	7.79	10.23	8.03	8.04	5.33
Merged-chr5-143919468-2	chr5	143919366	143919566	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008886, intron 7 of 14)	intron (NM_008886, intron 7 of 14)	9465.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	4.04	7.29	0.57	0.0	16.36	6.9	4.32	12.93	8.65	18.58	10.05	6.89
Merged-chr4-109280940-3	chr4	109280828	109281028	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007943, intron 1 of 24)	CpG	653.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	7.67	7.8	12.55	4.02	4.5	6.27	8.97	7.79	9.64	7.03	10.55	10.02
Merged-chr2-26644068-2	chr2	26643979	26644179	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	8.08	5.53	2.28	3.22	9.41	14.74	2.66	5.33	12.0	10.04	12.06	15.66
Merged-chr14-101561431-1	chr14	101561331	101561531	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	47760.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.23	4.53	6.28	3.62	5.32	1.57	5.31	6.03	2.16	5.52	3.52	3.76
Merged-chr5-31198640-3	chr5	31198474	31198674	+	733.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175311)	TTS (NM_175311)	3468.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	6.06	9.31	13.69	8.45	12.68	6.9	5.98	6.42	9.64	9.04	11.05	6.27
Merged-chr11-82088164-3	chr11	82088055	82088255	+	733.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13690.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	7.27	9.56	12.55	12.07	9.0	13.17	6.64	9.28	8.06	17.07	10.05	11.28
Merged-chr10-86463929-3	chr10	86463805	86464005	+	733.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	34991.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	7.27	14.59	9.13	14.48	14.32	4.08	5.31	9.11	10.62	5.52	7.54	9.08
Merged-chr12-119207391-4	chr12	119207308	119207508	+	733.427063	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177290, intron 2 of 13)	intron (NM_177290, intron 2 of 13)	30868.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	4.85	7.29	4.56	7.64	3.68	10.66	6.98	3.84	10.82	9.54	8.54	6.27
Merged-chr1-54443800-2	chr1	54443702	54443902	+	733.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4776.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	4.85	6.04	9.7	3.62	2.86	6.27	5.98	12.95	11.21	16.57	16.08	8.46
Merged-chr11-40714084-2	chr11	40713976	40714176	+	733.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013552, exon 11 of 18)	exon (NM_013552, exon 11 of 18)	-18873.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	7.27	6.29	9.13	12.87	24.96	10.03	19.27	29.78	6.88	9.04	8.04	5.01
Merged-chr5-120648999-5	chr5	120648939	120649139	+	733.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281999)	promoter-TSS (NM_001281999)	-149.0	NM_001281999	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	7.67	4.53	2.85	3.22	2.45	14.11	5.98	2.38	9.44	12.05	5.53	10.02
Merged-chr1-177282181-3	chr1	177282088	177282288	+	733.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33421.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	11.31	9.06	5.7	9.65	8.59	13.8	14.62	17.8	13.57	13.05	14.57	5.64
Merged-chr9-44170188-2	chr9	44170096	44170296	+	733.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	35538.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	6.86	2.52	4.56	2.01	18.41	17.56	8.3	7.23	10.23	12.55	10.05	1.25
Merged-chr8-108809037-2	chr8	108808933	108809133	+	733.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	94389.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	1.62	3.02	6.28	10.05	9.41	4.7	10.96	9.56	8.85	0.0	6.53	6.89
Merged-chr12-59216387-2	chr12	59216278	59216478	+	733.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	3105.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	8.48	7.04	4.56	8.45	8.18	10.66	14.28	15.81	21.83	2.51	10.05	4.07
Merged-chr10-68104753-1	chr10	68104653	68104853	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	125183.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.44	4.53	10.27	11.26	10.64	5.96	6.64	6.25	6.1	2.51	8.54	3.76
Merged-chr8-83077570-1	chr8	83077470	83077670	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	-87782.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.63	3.52	10.27	4.83	7.77	8.47	5.98	6.11	0.39	2.51	1.0	1.88
Merged-chr15-58861388-1	chr15	58861288	58861488	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-11261.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	7.27	3.02	6.85	5.63	6.95	5.02	7.64	7.85	5.11	13.05	6.03	4.7
Merged-chr16-18130480-1	chr16	18130380	18130580	+	733.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022982, intron 1 of 1)	intron (NM_022982, intron 1 of 1)	2774.0	NM_022982	65079.0	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	12.92	11.32	10.27	2.01	1.64	8.15	5.98	2.72	3.93	3.01	19.09	2.82
Merged-chr5-73180199-1	chr5	73180099	73180299	+	733.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	76419.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.81	1.01	3.42	1.61	0.0	1.25	1.33	1.32	14.36	5.02	15.07	9.4
Merged-chr4-96591431-1	chr4	96591331	96591531	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028979)	promoter-TSS (NM_028979)	54.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	3.23	1.51	1.71	5.63	7.36	1.88	5.31	4.43	0.39	2.01	1.51	1.25
Merged-chr6-17655284-1	chr6	17655184	17655384	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18274.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.81	2.01	5.7	5.23	4.91	6.9	6.31	8.69	2.36	0.0	10.05	2.82
Merged-chr2-167483293-3	chr2	167483207	167483407	+	733.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_170756, exon 3 of 3)	3' UTR (NM_170756, exon 3 of 3)	-9338.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	8.48	8.3	13.69	14.48	15.55	12.23	7.97	18.28	20.65	11.05	14.57	6.27
Merged-chr12-76519050-3	chr12	76518953	76519153	+	733.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14159.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	10.9	7.29	15.97	15.28	8.59	9.41	2.66	14.44	7.87	10.04	11.05	15.98
Merged-chr10-79554475-3	chr10	79554450	79554650	+	733.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316699, intron 1 of 13)	CpG	578.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	11.31	5.03	1.14	4.42	11.05	1.88	1.0	7.88	6.69	9.54	9.04	8.14
Merged-chr2-129414280-2	chr2	129414182	129414382	+	733.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43143.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	9.69	7.29	0.57	1.61	8.18	8.47	9.63	15.25	4.72	6.03	4.52	8.77
Merged-chr13-43094723-2	chr13	43094653	43094853	+	733.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001302636, exon 7 of 13)	exon (NM_001302636, exon 7 of 13)	-28086.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	8.48	7.29	10.84	8.45	13.5	10.98	8.97	23.92	7.67	9.04	5.53	6.58
Merged-chr1-182292253-2	chr1	182292162	182292362	+	733.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-8572.0	NR_015458	67330.0	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	8.88	4.28	11.41	6.03	11.86	7.21	10.96	16.93	4.72	3.01	12.56	11.9
Merged-chr1-39636357-1	chr1	39636257	39636457	+	733.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	14825.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	9.0	5.33	5.98	8.19	4.52	4.52	5.02	4.07
Merged-chr18-53934457-2	chr18	53934365	53934565	+	733.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	72352.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.27	8.55	11.98	5.63	10.64	0.94	5.31	9.48	3.93	3.01	1.51	3.76
Merged-chr8-71511843-3	chr8	71511768	71511968	+	733.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032398)	promoter-TSS (NM_032398)	-99.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	8.88	3.27	10.84	10.05	2.86	20.38	7.64	14.1	12.78	11.05	15.58	5.33
Merged-chr2-128416424-3	chr2	128416335	128416535	+	733.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	12916.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	9.29	9.31	14.83	2.01	2.05	5.33	1.0	4.74	17.9	13.56	19.09	8.46
Merged-chr4-134249843-3	chr4	134249724	134249924	+	733.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4233.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	12.11	10.82	2.85	4.83	6.14	6.27	1.0	6.08	9.05	17.07	18.09	11.9
Merged-chr3-13473159-2	chr3	13473041	13473241	+	733.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357036, exon 1 of 9)	5' UTR (NM_001357036, exon 1 of 9)	342.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	4.44	5.28	4.56	8.04	11.45	6.27	19.93	11.44	5.51	4.02	6.53	7.52
Merged-chr17-56350907-3	chr17	56350812	56351012	+	733.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	24862.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	8.88	9.06	9.7	12.07	10.64	12.86	5.31	6.79	18.49	12.55	13.06	16.92
Merged-chr14-61549737-3	chr14	61549617	61549817	+	733.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310603, intron 2 of 3)	intron (NM_001310603, intron 2 of 3)	7169.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	4.04	5.28	5.7	0.8	0.82	1.88	5.65	1.29	6.69	6.53	10.05	5.95
Merged-chr4-151051348-3	chr4	151051241	151051441	+	733.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009498, intron 2 of 4)	L1MB5|LINE|L1	6612.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	8.48	6.04	9.13	8.45	9.41	3.76	6.98	13.15	9.83	10.04	16.08	8.77
Merged-chr3-31139212-3	chr3	31139115	31139315	+	733.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10705.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	13.33	16.1	1.14	8.85	6.14	6.9	2.66	5.66	11.8	20.08	10.05	4.39
Merged-chr10-7050054-2	chr10	7049957	7050157	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26872.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.65	2.77	9.13	12.47	11.05	3.76	4.98	8.66	5.11	3.01	2.51	3.13
Merged-chr13-60605253-2	chr13	60605156	60605356	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3045.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	10.09	2.01	6.85	3.22	1.23	6.9	14.28	13.77	5.9	4.02	6.03	9.71
Merged-chr8-104655164-2	chr8	104655053	104655253	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13425.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	10.5	5.53	7.99	2.41	11.86	8.15	2.99	8.97	4.72	4.52	11.56	4.7
Merged-chr2-130178806-2	chr2	130178721	130178921	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009225, intron 1 of 6)	CpG	543.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	9.29	7.55	11.41	1.21	3.27	5.96	2.99	8.27	14.16	13.05	15.58	7.83
Merged-chr2-154752223-2	chr2	154752136	154752336	+	733.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1b|LINE|L1	-38874.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	4.85	4.53	4.56	6.84	6.95	8.15	2.33	10.12	6.29	3.01	3.52	5.33
Merged-chr11-121744159-3	chr11	121744072	121744272	+	733.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41745.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	8.88	8.3	6.85	9.65	17.18	14.74	5.65	11.33	8.46	13.05	17.08	10.65
Merged-chr3-87031075-3	chr3	87030971	87031171	+	733.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31731.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	8.08	12.07	4.56	9.25	12.27	13.17	8.64	6.62	12.19	13.05	8.54	10.34
Merged-chr3-152191959-3	chr3	152191858	152192058	+	733.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	1887.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	5.65	12.07	9.13	12.87	11.45	18.19	8.97	6.73	7.47	5.52	10.05	5.01
Merged-chr16-91561234-2	chr16	91561131	91561331	+	733.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 5 of 6)	intron (NM_008338, intron 5 of 6)	14137.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.67	6.04	2.28	2.82	5.32	9.41	2.66	4.96	12.0	3.51	13.06	10.96
Merged-chr12-16847421-2	chr12	16847333	16847533	+	733.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	36468.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	6.46	2.01	8.56	5.63	7.36	9.41	4.98	10.63	9.05	10.04	15.07	5.95
Merged-chr18-4350779-4	chr18	4350632	4350832	+	733.0625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	2221.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.04	5.79	7.42	2.01	9.0	4.39	5.98	5.13	12.78	6.03	6.53	7.83
Merged-chr4-11481265-3	chr4	11481168	11481368	+	733.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4690.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	7.27	10.82	7.99	5.23	6.95	4.08	8.64	7.96	11.01	16.07	15.07	9.08
Merged-chr1-138162895-3	chr1	138162778	138162978	+	733.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	12248.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	10.09	6.04	16.54	1.21	5.32	19.76	9.3	8.8	15.93	12.05	9.55	8.46
Merged-chr11-70845294-1	chr11	70845194	70845394	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291141, intron 1 of 16)	intron (NM_001291141, intron 1 of 16)	533.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	6.46	10.31	9.13	10.05	6.95	12.23	5.65	9.84	9.24	20.59	7.03	8.77
Merged-chr1-80371663-1	chr1	80371563	80371763	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30973.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.63	1.51	4.56	5.23	4.09	8.15	5.98	7.6	4.52	2.01	8.04	3.13
Merged-chr19-56144408-1	chr19	56144308	56144508	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143504.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	2.42	1.01	3.42	2.82	0.41	0.94	4.32	5.66	0.2	0.0	4.52	0.0
Merged-chr15-83510401-1	chr15	83510301	83510501	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	506.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	4.44	5.53	1.14	3.62	4.91	6.9	2.33	5.07	6.1	6.53	8.54	6.27
Merged-chr5-113875018-1	chr5	113874918	113875118	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	33688.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	2.42	1.01	0.0	2.01	4.91	2.82	8.64	9.2	2.16	5.02	2.51	1.88
Merged-chr11-50018966-2	chr11	50018869	50019069	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6362.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	7.27	4.02	3.99	11.66	11.86	13.17	8.64	9.06	10.03	4.02	8.54	10.34
Merged-chr11-110967295-1	chr11	110967195	110967395	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-738.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	1.62	3.02	2.28	4.42	4.91	9.72	4.98	5.55	1.38	2.01	1.51	2.51
Merged-chr16-97461431-2	chr16	97461353	97461553	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010846, intron 1 of 10)	intron (NM_010846, intron 1 of 10)	1452.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	1.62	4.53	1.71	4.83	6.14	5.96	2.33	10.91	10.42	7.53	5.53	5.33
Merged-chr9-48410410-1	chr9	48410310	48410510	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43934.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.4	0.25	0.0	0.0	1.64	0.0	0.66	0.0	7.67	14.56	9.04	13.47
Merged-chr2-167146057-1	chr2	167145957	167146157	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008420, intron 1 of 1)	B3|SINE|B2	42761.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	4.04	6.29	5.7	5.23	5.32	1.57	10.3	6.28	4.13	4.52	5.02	6.58
Merged-chr8-123254795-1	chr8	123254695	123254895	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310661)	promoter-TSS (NM_001310661)	-573.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	6.46	6.04	3.42	7.24	8.59	1.88	12.62	2.41	6.69	5.02	3.52	5.95
Merged-chr7-82881564-1	chr7	82881464	82881664	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14231.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	1.01	0.0	0.0	1.64	0.0	0.0	0.0	16.72	11.05	12.56	12.53
Merged-chr10-88054445-1	chr10	88054345	88054545	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36627.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	5.65	2.77	9.13	9.25	1.23	6.27	7.64	4.91	12.59	14.56	6.03	4.07
Merged-chr2-5655307-1	chr2	5655207	5655407	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MTC|LTR|ERVL-MaLR	20739.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.81	0.5	0.0	2.41	6.14	2.51	8.64	7.12	5.9	3.01	0.5	3.45
Merged-chr5-123820735-2	chr5	123820638	123820838	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042421, intron 63 of 63)	intron (NM_001042421, intron 63 of 63)	44778.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.46	5.28	1.14	2.41	2.45	4.7	0.0	0.0	12.78	9.04	2.01	3.45
Merged-chr2-3800015-1	chr2	3799915	3800115	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86557.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.25	3.02	7.42	9.25	4.91	5.96	3.32	4.68	4.13	3.01	4.52	5.33
Merged-chrX-13616961-1	chrX	13616861	13617061	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284503, intron 7 of 26)	intron (NM_001284503, intron 7 of 26)	-15808.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	13.33	3.27	3.99	8.45	10.64	3.14	3.32	6.62	8.46	6.03	2.01	4.39
Merged-chr11-106355843-2	chr11	106355740	106355940	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6450.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	8.48	4.53	7.99	5.63	9.0	6.27	3.99	9.31	13.57	9.04	13.57	6.27
Merged-chr16-4469850-2	chr16	4469745	4469945	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49347.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	8.08	7.04	7.99	10.86	2.05	11.6	2.33	5.61	4.72	11.05	10.55	7.21
Merged-chr1-136695056-3	chr1	136694992	136695192	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1119.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	10.9	5.79	6.85	5.63	10.23	9.72	4.98	9.31	9.24	4.52	8.04	7.52
Merged-chr10-57714466-2	chr10	57714389	57714589	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	63508.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	1.62	3.52	5.7	4.02	2.05	10.03	3.99	6.76	4.92	8.03	13.06	3.45
Merged-chr4-155736272-1	chr4	155736172	155736372	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101506, intron 2 of 3)	MIRb|SINE|MIR	1468.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	2.83	3.02	3.42	2.01	8.18	2.2	5.31	7.74	3.34	3.01	4.52	3.45
Merged-chr1-178683878-1	chr1	178683778	178683978	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 3 of 14)	intron (NM_001161665, intron 3 of 14)	154753.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	8.08	5.79	17.11	12.47	0.0	0.0	0.0	0.0	0.39	0.0	0.0	0.0
Merged-chr1-45867184-1	chr1	45867084	45867284	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58410.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.44	1.01	0.0	3.62	2.05	2.82	6.98	6.98	1.57	1.51	1.0	1.88
Merged-chr8-67431594-1	chr8	67431494	67431694	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59164.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	3.63	2.52	3.42	2.41	8.59	4.39	1.0	3.28	4.92	5.52	10.05	4.39
Merged-chr1-97567956-1	chr1	97567856	97568056	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93720.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.23	3.52	5.7	10.86	9.82	6.9	4.32	13.15	2.95	2.01	5.02	5.64
Merged-chrX-102070637-1	chrX	102070537	102070737	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001278534, exon 1 of 2)	exon (NM_001278534, exon 1 of 2)	670.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	3.23	5.28	3.99	10.46	3.27	7.84	4.32	4.93	0.98	4.52	13.57	1.88
Merged-chr6-4004073-1	chr6	4003973	4004173	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025331)	promoter-TSS (NM_025331)	86.0	NM_025331	66066.0	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	3.23	2.77	1.71	4.02	7.36	1.57	9.63	8.05	2.56	1.0	1.51	7.21
Merged-chr8-106433145-1	chr8	106433045	106433245	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17806.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	1.21	0.0	7.99	5.63	3.68	8.47	3.99	4.12	12.59	6.03	12.06	2.51
Merged-chr4-150001474-1	chr4	150001374	150001574	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	1762.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.85	1.51	5.7	3.62	13.5	6.9	4.65	7.32	4.52	6.03	9.55	5.95
Merged-chr19-37307408-1	chr19	37307308	37307508	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031156, intron 10 of 23)	intron (NM_031156, intron 10 of 23)	23205.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	1.62	3.27	0.57	4.02	3.27	1.25	8.97	6.0	3.93	7.53	7.03	0.94
Merged-chr1-91086384-1	chr1	91086284	91086484	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	32940.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.65	4.28	13.12	6.03	5.73	3.14	5.65	7.65	7.47	2.51	4.02	8.46
Merged-chr10-8196495-1	chr10	8196395	8196595	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-240372.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.04	3.02	7.99	4.83	5.73	6.27	2.33	6.59	9.83	5.02	4.52	3.45
Merged-chr13-115090657-2	chr13	115090569	115090769	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-511.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	9.69	10.31	23.96	13.67	5.73	13.8	10.96	10.57	13.37	13.05	7.03	10.65
Merged-chr1-157560831-2	chr1	157560734	157560934	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027641, exon 20 of 27)	non-coding (NR_027641, exon 20 of 27)	34664.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	10.09	7.29	5.7	5.63	4.91	8.47	6.98	7.26	6.88	5.52	3.52	2.82
Merged-chr1-171037081-1	chr1	171036981	171037181	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	18155.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.85	6.79	3.99	4.83	6.14	5.96	5.98	6.59	8.06	4.52	7.54	8.46
Merged-chr10-22008496-1	chr10	22008396	22008596	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13830.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.85	0.5	0.0	1.21	2.86	7.21	5.31	8.66	4.33	1.0	4.02	1.57
Merged-chr16-33956358-2	chr16	33956253	33956453	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	10685.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	10.09	7.8	5.7	9.25	12.68	8.47	7.64	12.36	7.87	6.03	17.08	5.64
Merged-chr6-54971947-1	chr6	54971847	54972047	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	-286.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.06	3.02	7.42	7.24	6.14	10.35	0.66	4.65	6.1	14.06	5.53	9.08
Merged-chr6-90487360-1	chr6	90487260	90487460	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24784.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	2.83	4.02	2.28	8.45	3.27	2.51	5.31	7.91	1.18	0.5	2.51	1.57
Merged-chr17-23967881-1	chr17	23967781	23967981	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	7349.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.42	3.02	1.14	0.8	7.77	4.08	2.66	3.25	17.31	13.05	10.55	7.83
Merged-chr10-98517821-1	chr10	98517721	98517921	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-165954.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	2.02	4.28	5.7	3.22	14.73	4.08	2.33	8.07	12.78	6.53	5.02	5.95
Merged-chr14-27340890-1	chr14	27340790	27340990	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	PB1D10|SINE|Alu	4853.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.85	7.29	2.28	4.42	5.73	5.96	3.65	6.0	9.44	4.02	5.02	5.01
Merged-chr7-71876284-1	chr7	71876184	71876384	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33411.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.23	5.79	9.13	4.83	13.5	9.41	7.31	8.52	4.13	11.05	2.51	2.51
Merged-chr15-50972714-1	chr15	50972614	50972814	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82673.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.4	2.01	1.14	5.23	4.09	3.76	5.98	5.66	2.36	6.53	6.03	3.45
Merged-chr4-41713945-1	chr4	41713845	41714045	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-428.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	3.23	5.53	1.14	3.62	5.32	7.53	1.0	2.19	3.54	13.05	14.07	1.57
Merged-chr11-110380282-1	chr11	110380182	110380382	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18820.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.83	3.02	1.14	4.42	4.5	5.33	4.98	5.5	7.47	7.53	8.54	5.95
Merged-chr18-47441705-1	chr18	47441605	47441805	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10963.0	NR_033453	77668.0	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	0.0	1.01	0.0	0.0	3.27	5.96	3.32	8.1	0.59	0.0	0.0	0.0
Merged-chr10-98882681-3	chr10	98882578	98882778	+	732.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31964.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.65	6.54	10.84	16.49	13.09	5.02	10.63	18.62	14.36	8.03	11.56	9.71
Merged-chr6-108834492-3	chr6	108834382	108834582	+	732.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	5841.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	6.06	11.07	8.56	7.24	9.82	17.25	4.65	9.17	10.23	6.53	14.07	5.33
Merged-chr3-51481258-3	chr3	51481141	51481341	+	732.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2725.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	10.5	12.58	17.68	10.86	9.82	16.62	1.33	9.81	24.78	10.54	15.58	8.46
Merged-chr3-90472388-3	chr3	90472304	90472504	+	732.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-3797.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	11.31	6.29	5.13	7.64	10.64	11.92	3.99	11.05	8.85	12.05	29.65	4.07
Merged-chr3-84169105-3	chr3	84169011	84169211	+	732.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271728, intron 10 of 11)	intron (NM_001271728, intron 10 of 11)	-5527.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	7.27	7.29	13.69	7.24	18.82	14.42	12.62	16.96	9.24	17.07	11.56	6.27
Merged-chr8-22963261-3	chr8	22963160	22963360	+	732.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11576.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	10.09	12.58	8.56	8.85	6.14	15.05	9.3	8.02	9.24	11.05	26.63	4.7
Merged-chr4-131837134-2	chr4	131837043	131837243	+	732.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083119, intron 1 of 30)	CpG	1135.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	3.23	5.28	5.7	5.63	6.95	10.03	2.99	6.34	6.49	3.51	16.08	4.7
Merged-chr19-36736716-2	chr19	36736627	36736827	+	732.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016854)	promoter-TSS (NM_016854)	-123.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	1.62	5.03	8.56	3.22	8.59	7.21	8.64	14.16	8.46	15.57	13.57	11.9
Merged-chr1-172047086-3	chr1	172046978	172047178	+	732.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10518.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	11.71	11.32	15.4	12.07	12.27	5.33	5.31	14.3	10.42	8.54	9.55	1.88
Merged-chr9-106687492-3	chr9	106687338	106687538	+	732.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030730)	TTS (NM_030730)	-1486.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	9.29	4.53	11.98	0.8	8.59	6.27	5.65	3.5	6.88	8.03	14.57	15.04
Merged-chrX-157492682-3	chrX	157492584	157492784	+	732.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009214)	promoter-TSS (NM_009214)	-397.0	NM_009214	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	6.46	6.29	15.4	7.64	6.95	6.59	7.64	7.29	11.01	5.02	13.06	4.7
Merged-chr6-122928861-3	chr6	122928769	122928969	+	732.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199311, intron 3 of 5)	intron (NM_199311, intron 3 of 5)	7021.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	7.27	9.31	13.69	8.04	7.77	10.35	6.64	10.12	9.05	10.54	12.56	5.01
Merged-chr16-32547776-2	chr16	32547671	32547871	+	732.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51490.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	8.08	3.02	15.97	3.22	9.0	6.59	11.63	6.17	2.95	3.01	3.01	2.19
Merged-chrX-74313494-2	chrX	74313402	74313602	+	732.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138607, intron 1 of 12)	intron (NM_138607, intron 1 of 12)	469.0	NM_138607	108160.0	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	8.08	9.81	7.99	4.42	7.77	1.25	5.31	3.06	12.98	7.03	9.04	8.77
Merged-chr5-41519115-2	chr5	41519012	41519212	+	732.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	188579.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	8.48	4.02	8.56	3.22	0.41	0.0	1.99	0.84	33.24	28.12	16.58	12.22
Merged-chr7-134669710-3	chr7	134669608	134669808	+	732.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	-979.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	9.29	7.8	5.13	5.63	9.0	8.15	10.96	12.95	10.62	3.51	14.57	12.84
Merged-chr2-14269376-2	chr2	14269275	14269475	+	732.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 7 of 29)	intron (NM_008625, intron 7 of 29)	8372.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	4.85	8.8	6.85	22.52	7.36	4.39	15.28	23.05	9.24	2.01	9.04	5.95
Merged-chr7-16782058-2	chr7	16781981	16782181	+	732.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009201, exon 1 of 9)	exon (NM_009201, exon 1 of 9)	735.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	7.27	8.55	6.85	11.26	6.14	2.82	10.96	7.96	6.49	3.51	7.54	9.71
Merged-chr11-114680927-2	chr11	114680842	114681042	+	732.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5474.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	3.63	2.77	1.14	0.8	9.41	8.78	9.63	10.18	9.44	7.03	7.03	7.83
Merged-chr16-23991337-3	chr16	23991228	23991428	+	732.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2476.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	15.34	10.82	11.98	11.66	10.64	15.37	1.33	6.42	15.93	13.56	13.57	6.58
Merged-chr9-7784037-1	chr9	7783937	7784137	+	732.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_049191)	promoter-TSS (NR_049191)	-353.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	3.63	5.03	2.28	3.22	2.45	6.27	12.62	6.59	3.15	0.5	7.54	3.13
Merged-chr12-105972507-2	chr12	105972397	105972597	+	732.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-37766.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	6.46	8.55	15.97	13.27	2.45	1.25	1.33	4.32	16.92	12.05	15.58	6.58
Merged-chr5-137836257-3	chr5	137836149	137836349	+	732.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153510)	promoter-TSS (NM_153510)	29.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	13.73	7.04	10.27	4.83	10.23	14.42	15.61	3.79	12.59	2.51	15.07	5.33
Merged-chr3-95232556-3	chr3	95232471	95232671	+	732.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172395, exon 3 of 5)	exon (NM_172395, exon 3 of 5)	3628.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	9.69	8.3	0.0	9.65	9.41	8.47	6.98	9.14	15.14	4.02	18.09	7.21
Merged-chr6-31110099-2	chr6	31109990	31110190	+	732.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46997.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	6.06	4.28	2.28	2.41	9.41	11.92	6.64	5.66	10.03	17.07	13.06	10.65
Merged-chr17-12656003-3	chr17	12655909	12656109	+	732.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009202, intron 8 of 10)	ORR1E|LTR|ERVL-MaLR	19829.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	4.85	8.05	15.4	8.85	2.86	13.8	9.97	13.68	6.1	8.54	21.61	7.52
Merged-chr14-60916875-1	chr14	60916775	60916975	+	732.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	121112.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.81	1.51	10.27	9.65	6.14	4.08	7.97	12.34	2.56	8.54	12.56	5.33
Merged-chr14-26491372-3	chr14	26491261	26491461	+	732.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	43263.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	10.9	8.55	10.27	8.45	6.55	11.6	4.65	8.33	11.21	12.55	10.05	10.02
Merged-chr13-59975451-1	chr13	59975351	59975551	+	732.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54260.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.0	1.01	0.0	1.61	9.82	6.9	4.32	7.46	1.97	2.01	4.02	2.19
Merged-chr3-37754353-1	chr3	37754253	37754453	+	732.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29993.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.75	1.14	0.4	8.18	10.03	5.98	9.81	4.92	2.51	9.04	6.58
Merged-chr12-67059369-2	chr12	67059284	67059484	+	732.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193266, intron 1 of 16)	GSAT_MM|Satellite|Satellite	163165.0	NM_001193266	320772.0	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	8.48	7.8	3.99	4.02	11.05	1.57	6.64	11.16	1.18	1.51	5.53	1.88
Merged-chr13-113607473-2	chr13	113607407	113607607	+	732.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11057.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.86	8.05	7.99	5.63	9.82	19.44	2.33	2.21	7.47	12.55	1.51	0.0
Merged-chr9-71189261-2	chr9	71189143	71189343	+	732.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	20467.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	12.11	6.79	5.7	6.03	8.18	12.23	5.98	5.02	12.78	13.56	14.57	9.08
Merged-chr2-164972929-2	chr2	164972829	164973029	+	732.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020333, intron 1 of 25)	L2b|LINE|L2	4941.0	NM_020333	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	4.85	3.27	1.71	3.22	2.05	3.76	4.65	8.38	10.03	15.06	12.06	6.27
Merged-chr12-100501438-3	chr12	100501332	100501532	+	732.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19390.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.04	7.55	7.42	11.26	14.32	9.72	14.95	18.79	8.65	3.01	13.06	10.96
Merged-chr1-74713859-3	chr1	74713767	74713967	+	732.611084	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024264, exon 1 of 9)	exon (NM_024264, exon 1 of 9)	332.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	4.04	4.28	2.28	7.24	5.73	3.76	2.99	9.11	3.15	7.03	9.04	6.58
Merged-chr15-62096802-2	chr15	62096697	62096897	+	732.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	57540.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	13.73	6.79	7.42	4.02	8.18	7.53	6.98	9.0	9.83	9.04	11.56	8.46
Merged-chr9-49489101-3	chr9	49489026	49489226	+	732.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2901.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	10.5	9.56	9.7	4.42	8.18	9.09	3.32	10.37	13.18	8.54	11.56	6.89
Merged-chr17-27501828-2	chr17	27501725	27501925	+	732.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013385, intron 1 of 8)	intron (NM_001013385, intron 1 of 8)	1708.0	NM_001013385	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.4	8.55	15.4	12.87	9.41	7.21	10.63	6.14	8.85	2.01	4.02	3.45
Merged-chr9-118486551-2	chr9	118486452	118486652	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010136)	TTS (NM_010136)	8363.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	7.27	7.8	9.13	4.83	6.95	8.78	0.66	6.79	4.13	11.05	18.09	4.39
Merged-chr3-95637389-3	chr3	95637325	95637525	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	12445.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.85	6.54	3.99	8.04	18.0	7.84	9.97	15.45	9.44	7.03	8.04	5.64
Merged-chr5-38479176-2	chr5	38479100	38479300	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	1106.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.25	10.82	5.7	9.25	10.23	10.35	6.64	6.34	5.51	6.03	15.58	3.45
Merged-chr6-134558921-2	chr6	134558788	134558988	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	8025.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	2.02	3.77	2.28	5.63	1.64	3.76	2.99	3.81	22.62	11.55	15.07	18.17
Merged-chr3-136086641-3	chr3	136086538	136086738	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	239428.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	10.5	7.55	12.55	12.47	27.41	8.47	17.61	17.61	8.26	8.03	6.03	5.64
Merged-chr9-114778420-1	chr9	114778320	114778520	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252479, intron 1 of 3)	L1MB8|LINE|L1	3573.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.0	3.52	9.7	4.83	7.36	2.2	6.31	3.84	5.51	6.03	10.05	3.45
Merged-chr16-49278690-2	chr16	49278569	49278769	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	221183.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	5.65	1.26	2.85	2.82	5.73	4.08	2.33	8.5	3.93	7.03	20.1	10.96
Merged-chr7-45406690-1	chr7	45406590	45406790	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010596, exon 1 of 2)	exon (NM_010596, exon 1 of 2)	730.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.81	4.02	3.99	2.82	9.0	3.14	2.99	6.7	4.72	4.52	7.54	2.82
Merged-chr15-58238054-1	chr15	58237954	58238154	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23162.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	2.42	1.01	3.42	2.41	8.18	5.02	2.66	6.67	3.93	1.0	4.02	1.25
Merged-chr2-6405422-2	chr2	6405323	6405523	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 4 of 13)	intron (NM_181399, intron 4 of 13)	52687.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	9.69	4.53	9.13	4.83	7.36	7.84	6.98	7.09	6.29	8.03	15.07	6.58
Merged-chr14-79487514-1	chr14	79487414	79487614	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6246.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	6.46	5.03	0.0	4.83	4.5	7.84	5.31	8.05	7.47	4.02	3.01	2.51
Merged-chr15-30740907-2	chr15	30740793	30740993	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-298233.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.23	2.26	4.56	9.25	10.64	1.57	6.98	6.98	7.47	8.54	19.6	8.46
Merged-chr15-58775752-2	chr15	58775650	58775850	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47677.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.85	6.29	11.41	6.44	7.36	1.57	4.32	5.1	15.34	7.03	15.58	8.46
Merged-chr9-114957176-2	chr9	114957076	114957276	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23189.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	6.86	3.27	7.42	6.44	6.14	7.21	1.33	7.32	16.13	9.54	16.08	3.13
Merged-chr18-38922475-1	chr18	38922375	38922575	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-3776.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.02	2.01	0.57	8.85	5.73	1.88	5.31	6.84	0.2	0.0	5.02	2.51
Merged-chr2-4616487-3	chr2	4616393	4616593	+	732.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	35642.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	5.25	7.8	8.56	10.86	2.05	9.72	9.3	11.58	9.83	7.53	8.54	1.88
Merged-chr13-41220407-3	chr13	41220353	41220553	+	732.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019423)	promoter-TSS (NM_019423)	-50.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	6.86	3.27	2.28	2.82	4.91	6.59	2.66	6.62	10.03	7.03	19.6	4.39
Merged-chr15-78623616-2	chr15	78623513	78623713	+	732.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26566.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.65	4.78	8.56	3.22	7.36	6.27	4.65	4.09	14.95	6.03	15.58	12.22
Merged-chr17-86536033-2	chr17	86535922	86536122	+	732.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-217842.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.04	2.52	2.85	2.01	8.59	15.99	4.65	9.67	17.11	10.04	8.04	8.77
Merged-chr8-22708063-3	chr8	22707977	22708177	+	732.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	14.54	7.8	11.41	8.04	7.77	15.68	7.31	15.0	11.21	10.54	9.55	5.01
Merged-chr15-91180074-2	chr15	91179964	91180164	+	732.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	11943.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.04	2.77	4.56	5.63	10.64	6.27	12.95	16.51	3.74	5.52	14.07	9.08
Merged-chr2-59286469-3	chr2	59286329	59286529	+	732.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	100253.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	8.88	3.52	17.68	9.25	7.36	10.35	17.94	24.81	3.54	4.52	11.05	6.58
Merged-chr3-27338636-2	chr3	27338537	27338737	+	732.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009425, exon 5 of 5)	3' UTR (NM_009425, exon 5 of 5)	21560.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.85	1.26	6.28	6.44	11.05	11.92	1.66	9.06	12.19	10.54	9.04	6.27
Merged-chr5-137872768-2	chr5	137872635	137872835	+	732.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-977.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	5.65	2.26	14.26	2.82	9.0	7.53	8.97	7.15	9.83	5.52	13.06	8.14
Merged-chr7-145309101-2	chr7	145308970	145309170	+	732.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145379, exon 3 of 3)	3' UTR (NM_145379, exon 3 of 3)	-5765.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.83	3.77	5.7	0.0	13.91	6.9	5.98	7.35	9.24	5.02	14.07	5.33
Merged-chr9-100391850-3	chr9	100391721	100391921	+	732.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	94652.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.86	6.29	10.84	3.62	4.09	5.33	11.63	5.19	12.39	9.04	11.56	9.71
Merged-chr15-81022219-1	chr15	81022119	81022319	+	732.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	44454.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.25	5.79	11.41	0.0	3.27	2.82	1.99	3.87	6.88	3.01	11.56	10.96
Merged-chr3-133550009-1	chr3	133549909	133550109	+	732.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5619.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	8.08	3.52	1.71	1.21	4.91	9.72	4.98	7.99	2.16	3.51	2.51	2.19
Merged-chr11-78263870-1	chr11	78263770	78263970	+	732.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 3 of 38)	intron (NM_001002004, intron 3 of 38)	2116.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	13.73	5.28	1.14	4.83	11.05	1.25	8.97	6.84	5.51	2.01	2.51	7.52
Merged-chr13-101763153-3	chr13	101763079	101763279	+	732.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	5038.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	9.69	9.31	4.56	9.25	6.14	6.59	9.3	6.39	11.21	5.52	9.55	4.39
Merged-chr6-97496202-3	chr6	97496127	97496327	+	732.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-8407.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	13.73	10.56	2.28	3.22	2.45	17.87	6.64	6.45	19.67	13.56	13.06	5.64
Merged-chr6-116628867-3	chr6	116628685	116628885	+	732.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302440)	promoter-TSS (NM_001302440)	-84.0	NM_001302440	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	8.08	8.55	3.42	3.22	3.27	5.64	8.97	2.41	7.28	8.54	6.03	4.07
Merged-chr15-57692114-1	chr15	57692014	57692214	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2553.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	6.46	4.28	1.14	9.65	11.86	8.15	5.31	6.48	4.72	11.55	5.53	5.33
Merged-chr7-98543022-2	chr7	98542928	98543128	+	732.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	48806.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	10.5	9.81	17.68	7.24	6.14	9.41	4.98	6.0	21.64	12.05	6.03	4.7
Merged-chr7-68144986-2	chr7	68144901	68145101	+	732.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119232.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	3.23	5.03	10.84	14.48	5.73	5.96	7.64	9.03	4.92	4.02	10.05	7.52
Merged-chr1-87149515-2	chr1	87149407	87149607	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001277925, exon 14 of 18)	exon (NM_001277925, exon 14 of 18)	6629.0	NM_001277925	13599.0	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	2.83	6.54	6.28	6.44	3.68	8.78	9.63	14.24	7.08	7.03	5.02	4.39
Merged-chr8-18935706-2	chr8	18935610	18935810	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15161.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.04	4.78	6.28	2.01	13.5	6.9	12.29	11.69	6.49	14.06	10.55	12.84
Merged-chr6-83415718-2	chr6	83415610	83415810	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-14608.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	10.9	3.27	4.56	6.03	9.82	4.08	4.98	9.06	10.03	4.52	12.06	3.13
Merged-chr4-155667172-1	chr4	155667072	155667272	+	732.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145124, intron 1 of 18)	intron (NM_145124, intron 1 of 18)	2082.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	2.42	2.77	2.28	3.62	2.86	1.88	0.0	2.89	11.8	13.56	14.57	9.08
Merged-chr1-138835556-3	chr1	138835443	138835643	+	732.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025565, intron 3 of 4)	intron (NM_001025565, intron 3 of 4)	6901.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	12.11	6.29	9.13	8.45	15.14	11.6	6.31	15.56	17.7	12.05	8.54	4.7
Merged-chr7-106215399-3	chr7	106215289	106215489	+	732.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029000).2	promoter-TSS (NM_029000).2	-49.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	12.92	8.55	6.85	10.05	15.14	12.23	7.97	10.37	22.62	21.09	31.66	7.52
Merged-chr2-91098127-5	chr2	91097967	91098167	+	732.186646	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1389.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.04	5.79	2.85	2.41	4.91	5.96	4.32	3.98	6.69	5.52	7.54	5.64
Merged-chr17-27018077-2	chr17	27017985	27018185	+	732.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001251881)	promoter-TSS (NM_001251881)	50.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	11.31	6.04	3.42	2.01	6.95	11.29	4.98	6.14	10.62	8.54	7.03	7.52
Merged-chr7-30972809-2	chr7	30972723	30972923	+	732.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	646.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	6.06	5.03	7.42	4.02	11.45	5.33	7.97	9.11	7.87	9.04	9.55	8.14
Merged-chr5-8350983-2	chr5	8350865	8351065	+	732.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	17195.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	7.27	2.52	10.84	9.65	10.64	4.08	14.62	13.12	5.9	9.54	6.03	3.45
Merged-chr5-92381966-3	chr5	92381835	92382035	+	732.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-6199.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	11.71	6.04	7.99	10.05	11.05	5.96	4.98	7.6	17.31	14.56	26.13	19.11
Merged-chr6-131277241-2	chr6	131277140	131277340	+	732.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	16004.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	7.27	9.56	11.41	9.25	6.55	9.41	9.63	14.05	5.31	8.54	2.51	5.01
Merged-chr13-41520974-3	chr13	41520875	41521075	+	732.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33615.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.08	3.77	12.55	12.07	4.09	17.56	9.97	19.71	9.83	8.54	12.06	7.21
Merged-chr2-160887478-3	chr2	160887372	160887572	+	732.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199118)	promoter-TSS (NM_001199118)	-696.0	NM_001199118	64899.0	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	12.92	3.52	4.56	8.85	10.23	14.11	4.65	9.5	9.05	7.53	5.53	6.89
Merged-chr16-21836861-3	chr16	21836742	21836942	+	732.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42495.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	10.9	8.8	5.7	10.86	5.32	11.6	5.98	7.29	11.41	5.52	15.07	7.21
Merged-chr5-72552205-3	chr5	72552102	72552302	+	732.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	7443.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	7.27	6.79	11.98	4.42	9.82	11.29	9.97	10.26	13.96	15.57	6.53	6.89
Merged-chr8-53505649-3	chr8	53505555	53505755	+	732.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6047.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	8.08	6.29	3.42	8.85	10.23	14.42	11.63	14.33	9.05	9.54	14.57	7.21
Merged-chr9-25569903-1	chr9	25569803	25570003	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	MTEa|LTR|ERVL-MaLR	88306.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.23	0.25	2.28	0.8	3.27	1.25	7.64	4.51	3.15	2.01	4.52	7.52
Merged-chr7-140831631-1	chr7	140831531	140831731	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR21|LTR|ERVK	-3507.0	NM_001347605	76974.0	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik|HIUHase	urate (5-hydroxyiso-) hydrolase	protein-coding	10.09	5.53	3.99	1.61	5.73	7.21	1.33	6.22	2.95	3.01	6.03	4.07
Merged-chr18-68219172-3	chr18	68219060	68219260	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-8786.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.44	6.54	11.41	12.87	10.64	10.66	8.97	11.94	7.87	4.02	13.06	7.52
Merged-chr10-14045893-1	chr10	14045793	14045993	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	79514.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.42	2.01	0.0	2.82	1.23	0.63	1.99	0.39	13.57	9.54	13.57	9.4
Merged-chr12-84111002-1	chr12	84110902	84111102	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3326.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	3.23	4.78	2.85	6.44	9.0	4.7	1.66	10.91	5.7	4.02	11.05	5.64
Merged-chrX-106056018-2	chrX	106055921	106056121	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	28797.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	10.09	3.27	4.56	5.63	11.86	11.92	10.63	16.01	8.46	10.54	11.05	4.7
Merged-chrX-49274631-1	chrX	49274531	49274731	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	MIRc|SINE|MIR	13611.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	4.85	2.52	5.13	6.44	2.05	2.82	5.65	5.86	3.54	5.52	5.53	4.07
Merged-chr9-108568611-1	chr9	108568511	108568711	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-166.0	NR_029947	723864.0		NR_029947	ENSMUSG00000065579	Mir425	Mirn425|mmu-mir-425	microRNA 425	ncRNA	11.71	7.55	7.42	1.61	10.23	17.87	5.31	0.5	11.8	9.54	8.04	3.45
Merged-chrUn_JH584304-19909-1	chrUn_JH584304	19809	20009	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	39780.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.55	9.54	7.54	8.46
Merged-chr10-98402782-1	chr10	98402682	98402882	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50915.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.04	3.27	3.42	2.82	2.45	1.25	6.31	6.42	6.1	0.5	2.51	5.95
Merged-chr19-34753475-1	chr19	34753375	34753575	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6364.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	7.27	6.54	6.85	4.83	5.73	14.42	12.29	8.64	8.46	6.53	10.55	5.64
Merged-chr16-4740157-1	chr16	4740057	4740257	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	B1_Mus1|SINE|Alu	-1456.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.04	0.5	5.13	0.8	1.64	1.57	2.66	2.24	10.62	5.52	9.04	8.14
Merged-chr16-27413495-1	chr16	27413395	27413595	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025615, intron 4 of 9)	intron (NM_001025615, intron 4 of 9)	24539.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	4.85	0.5	4.56	4.83	7.36	4.39	4.32	10.01	5.51	0.0	8.04	9.4
Merged-chr15-6065265-1	chr15	6065165	6065365	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20561.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	3.23	3.02	5.7	3.22	6.55	2.2	2.66	10.01	10.42	3.01	13.57	8.77
Merged-chr4-108762189-1	chr4	108762089	108762289	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	intron (NM_001347163, intron 1 of 18)	18899.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	7.67	3.02	2.28	9.25	5.32	5.33	6.64	7.29	4.13	3.51	0.5	3.76
Merged-chr10-17925317-1	chr10	17925217	17925417	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	22750.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	2.42	1.26	1.14	5.23	4.09	0.63	6.98	6.36	0.79	5.52	4.02	2.82
Merged-chr2-118760025-1	chr2	118759925	118760125	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001982, intron 5 of 10)	intron (NM_001001982, intron 5 of 10)	2636.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	12.92	2.77	0.0	0.8	4.5	7.53	3.99	7.74	4.72	3.01	7.03	7.52
Merged-chr2-162958407-2	chr2	162958287	162958487	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081338, intron 8 of 22)	intron (NM_001081338, intron 8 of 22)	14922.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	2.83	4.78	4.56	6.84	1.23	2.82	5.65	8.41	6.69	4.02	10.05	6.58
Merged-chr5-45402786-1	chr5	45402686	45402886	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	21614.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	4.04	5.28	2.28	3.62	4.5	6.9	3.32	6.42	0.59	3.51	0.5	2.19
Merged-chr10-20696768-1	chr10	20696668	20696868	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	28310.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.42	1.76	5.13	1.61	2.05	1.25	4.98	6.22	0.59	1.0	4.02	3.45
Merged-chr7-92876260-3	chr7	92876174	92876374	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	MIRc|SINE|MIR	1021.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	1.62	8.05	3.42	6.03	2.86	1.57	10.96	4.12	12.19	9.04	8.04	6.58
Merged-chr6-8546437-1	chr6	8546337	8546537	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286729, intron 2 of 7)	intron (NM_001286729, intron 2 of 7)	26379.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	4.44	5.53	7.99	4.83	8.18	7.53	9.97	15.14	5.31	3.01	10.05	5.64
Merged-chr7-16845448-1	chr7	16845348	16845548	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	2383.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	4.85	3.77	7.99	5.63	7.36	2.51	2.66	2.24	9.83	6.53	2.51	9.4
Merged-chr19-5131424-1	chr19	5131324	5131524	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-13016.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	4.04	4.78	5.7	4.42	3.68	11.6	3.99	6.7	2.56	3.51	16.08	2.82
Merged-chr2-153742025-1	chr2	153741925	153742125	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007896, intron 1 of 6)	intron (NM_007896, intron 1 of 6)	738.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	5.65	6.29	9.13	4.02	11.45	11.29	9.63	6.28	12.0	7.03	8.04	5.95
Merged-chr6-148252897-1	chr6	148252797	148252997	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198967, intron 13 of 19)	intron (NM_198967, intron 13 of 19)	-40523.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	3.23	3.02	6.85	8.85	0.82	2.82	5.65	5.94	0.59	0.5	3.01	2.19
Merged-chr9-98973319-1	chr9	98973219	98973419	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-13054.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	6.86	2.77	3.42	2.41	3.27	2.2	5.31	5.64	8.06	2.51	6.03	1.57
Merged-chr11-62553266-2	chr11	62553162	62553362	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002875)	TTS (NR_002875)	1531.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.25	6.29	2.85	4.83	9.0	5.02	2.66	7.21	8.06	8.54	3.01	6.58
Merged-chr14-13912431-2	chr14	13912308	13912508	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48905.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	4.85	5.28	7.42	2.82	4.91	5.64	5.98	6.06	9.64	3.01	13.06	8.77
Merged-chr5-73540360-1	chr5	73540260	73540460	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153313, intron 7 of 9)	intron (NR_153313, intron 7 of 9)	49334.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	5.65	3.27	3.99	1.21	4.5	3.76	5.31	7.07	6.1	2.01	2.01	4.7
Merged-chr13-17992086-1	chr13	17991986	17992186	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	1265.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	4.04	3.77	10.27	2.82	9.41	4.7	4.65	5.41	3.74	9.04	5.02	2.82
Merged-chr17-72833482-1	chr17	72833382	72833582	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3146.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	6.46	0.5	0.0	4.02	6.95	3.45	2.33	2.21	2.75	6.03	3.52	5.33
Merged-chr9-61627953-2	chr9	61627848	61628048	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	255582.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	9.69	7.55	11.98	6.44	6.95	6.9	11.96	10.04	4.33	0.0	4.52	6.27
Merged-chr7-101912094-1	chr7	101911994	101912194	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027053)	TTS (NM_027053)	-5735.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	2.42	5.53	7.42	4.02	1.23	7.84	3.65	6.31	6.69	1.51	3.01	1.57
Merged-chr3-76068117-1	chr3	76068017	76068217	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6444.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	4.85	2.77	0.57	4.02	7.77	9.41	1.66	9.76	4.52	8.03	8.04	6.89
Merged-chr9-40723021-1	chr9	40722921	40723121	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	37057.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	2.01	5.7	7.64	8.59	3.45	6.31	6.45	1.18	0.5	1.0	3.45
Merged-chr8-94371579-2	chr8	94371479	94371679	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14850.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.44	4.78	5.7	2.82	9.0	4.39	5.31	7.85	10.82	5.02	11.56	6.27
Merged-chr5-35235600-1	chr5	35235500	35235700	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42966.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.4	2.52	2.28	1.61	4.91	4.39	4.98	3.7	3.15	1.51	12.56	9.71
Merged-chr10-19013854-1	chr10	19013754	19013954	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009397, intron 1 of 8)	intron (NM_009397, intron 1 of 8)	1556.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.27	5.53	2.85	0.0	2.45	9.72	6.64	3.08	12.19	6.53	2.51	9.4
Merged-chr10-75318408-2	chr10	75318303	75318503	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	803.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	5.65	9.31	9.13	3.22	2.86	10.35	4.32	1.63	10.82	6.53	14.07	4.7
Merged-chr6-100287849-1	chr6	100287749	100287949	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-491.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	15.75	16.35	17.68	15.69	28.23	18.5	10.3	21.25	24.78	29.12	22.61	10.65
Merged-chr16-22358644-1	chr16	22358544	22358744	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63656.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	4.44	3.27	10.84	8.04	2.86	6.59	0.0	6.76	13.37	15.57	11.56	8.14
Merged-chr13-101538285-3	chr13	101538170	101538370	+	731.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-140690.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	9.29	11.57	6.85	7.24	15.55	11.29	5.98	10.57	13.96	9.54	14.57	5.01
Merged-chr5-137760235-3	chr5	137760138	137760338	+	731.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023910)	TTS (NM_023910)	14269.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	10.5	8.05	1.14	2.82	8.18	11.6	5.98	7.77	10.42	7.03	10.55	7.21
Merged-chr7-44356559-3	chr7	44356507	44356707	+	731.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 24 of 24)	intron (NM_001034115, intron 24 of 24)	18423.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.23	7.55	11.41	7.64	2.05	10.03	4.98	5.1	8.85	8.54	15.58	7.52
Merged-chr17-46893269-3	chr17	46893175	46893375	+	731.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178385)	TTS (NM_178385)	2654.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	10.9	3.77	10.84	4.42	10.23	18.81	5.65	10.21	9.44	2.51	10.55	4.7
Merged-chr14-61683715-4	chr14	61683544	61683744	+	731.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1271.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.23	5.53	3.42	5.63	2.45	3.14	0.66	1.26	6.69	3.51	6.03	2.19
Merged-chr4-109136983-2	chr4	109136882	109137082	+	731.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001355191, exon 1 of 21)	5' UTR (NM_001355191, exon 1 of 21)	931.0	NM_001355191	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.63	3.77	11.41	10.05	10.23	13.48	12.95	17.19	4.13	4.52	8.04	2.82
Merged-chr19-4149525-3	chr19	4149454	4149654	+	731.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011778, intron 2 of 10)	intron (NM_011778, intron 2 of 10)	891.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	8.88	4.78	6.85	6.03	17.18	7.21	3.32	6.73	12.19	7.03	10.55	5.95
Merged-chr6-112930311-2	chr6	112930207	112930407	+	731.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	16959.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	1.62	2.52	3.42	2.01	6.55	9.72	5.65	8.55	8.26	7.53	11.56	10.34
Merged-chr3-84325170-2	chr3	84325094	84325294	+	731.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20419.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.5	6.85	1.61	4.09	7.84	10.96	9.79	8.26	8.54	13.06	8.46
Merged-chr7-75371109-2	chr7	75371011	75371211	+	731.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61849.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	10.09	4.02	9.13	8.85	8.18	6.27	7.31	11.69	4.72	2.51	3.52	3.45
Merged-chr17-44789138-2	chr17	44789041	44789241	+	731.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	11975.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	5.25	3.77	4.56	6.84	3.27	10.35	5.98	6.93	2.75	4.02	9.04	6.89
Merged-chr4-47351683-2	chr4	47351607	47351807	+	731.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	-1515.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	9.29	7.29	1.71	3.62	3.27	3.45	4.98	5.19	6.88	9.54	10.05	7.52
Merged-chr19-5631202-1	chr19	5631102	5631302	+	731.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-6288.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	10.5	2.52	2.28	4.02	9.0	8.78	7.31	8.5	0.39	0.0	0.0	0.63
Merged-chr17-50512436-3	chr17	50512336	50512536	+	731.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	2889.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.63	6.29	14.26	2.82	3.27	10.66	3.99	11.33	11.8	16.07	18.09	6.27
Merged-chr7-129859880-2	chr7	129859780	129859980	+	731.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102285.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	9.69	3.77	9.7	11.26	9.41	16.31	13.62	30.48	3.34	0.5	7.54	0.31
Merged-chr17-65540847-4	chr17	65540725	65540925	+	731.795837	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289486)	promoter-TSS (NM_001289486)	-43.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	5.65	5.53	0.0	7.24	4.5	6.9	8.3	7.68	4.52	5.52	14.07	5.64
Merged-chr2-132090009-3	chr2	132089925	132090125	+	731.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 4 of 6)	intron (NM_001355431, intron 4 of 6)	55083.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	12.11	8.05	9.13	8.04	9.82	10.35	5.31	10.12	10.82	6.03	5.02	6.89
Merged-chrX-51017116-3	chrX	51017033	51017233	+	731.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172413, intron 1 of 2)	intron (NM_172413, intron 1 of 2)	885.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	4.04	13.08	7.99	7.24	12.27	9.41	8.97	11.5	12.78	11.55	9.55	10.65
Merged-chr11-69655555-3	chr11	69655464	69655664	+	731.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009235, exon 1 of 2)	exon (NM_009235, exon 1 of 2)	527.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	12.92	7.04	9.13	4.02	5.73	9.41	5.65	5.38	13.37	17.57	12.06	4.07
Merged-chr3-33801042-2	chr3	33800941	33801141	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025978, exon 2 of 10)	exon (NM_025978, exon 2 of 10)	858.0	NM_001290500	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.81	2.77	1.14	3.62	8.18	3.14	6.64	11.02	4.52	8.03	15.07	7.21
Merged-chr9-58534951-2	chr9	58534852	58535052	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133983, intron 3 of 6)	intron (NM_133983, intron 3 of 6)	5988.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	6.06	6.04	3.99	3.62	2.86	5.96	6.64	5.21	11.6	11.55	9.55	4.39
Merged-chrX-74057462-1	chrX	74057362	74057562	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081979, intron 1 of 2)	intron (NM_001081979, intron 1 of 2)	28228.0	NM_010788	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	3.63	2.52	7.99	4.02	8.18	9.09	7.64	6.87	4.13	5.52	2.51	5.01
Merged-chr7-128302375-2	chr7	128302263	128302463	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4232.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	3.63	4.78	7.42	3.62	7.77	9.09	5.65	7.71	11.01	3.51	9.55	12.22
Merged-chr18-68234729-3	chr18	68234591	68234791	+	731.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357444, intron 1 of 3)	intron (NM_001357444, intron 1 of 3)	6745.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.04	5.03	9.7	7.64	6.95	6.9	11.63	11.36	7.47	6.03	13.06	6.27
Merged-chr6-134792283-3	chr6	134792191	134792391	+	731.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-69.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	26.25	9.56	13.12	9.25	12.68	13.17	11.29	13.01	14.55	13.05	29.65	9.4
Merged-chr18-88772959-1	chr18	88772859	88773059	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121248.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.46	5.53	2.28	11.26	6.55	5.33	5.31	7.12	6.88	5.52	7.03	8.46
Merged-chr17-27989930-3	chr17	27989834	27990034	+	731.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 9 of 24)	intron (NM_181413, intron 9 of 24)	80628.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.86	8.05	14.83	8.45	12.68	6.9	4.98	13.01	9.44	5.02	13.57	10.34
Merged-chr15-36852605-1	chr15	36852505	36852705	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-55676.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	1.62	3.52	0.57	3.22	2.86	10.03	7.97	8.19	4.13	6.03	7.03	5.64
Merged-chr17-15774940-1	chr17	15774840	15775040	+	731.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51646.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.81	4.78	5.13	6.84	3.68	1.25	1.66	2.13	10.82	10.04	5.53	7.83
Merged-chr13-92320973-1	chr13	92320873	92321073	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	L1MA9|LINE|L1	-33810.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.23	2.52	6.85	3.22	6.55	10.35	7.64	6.95	5.9	0.5	0.0	2.19
Merged-chr2-84427502-1	chr2	84427402	84427602	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2236.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.63	3.02	3.42	6.84	8.59	7.53	0.66	7.09	8.46	2.01	4.52	5.64
Merged-chr8-117404085-1	chr8	117403985	117404185	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-48938.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	3.23	1.26	2.28	3.22	6.14	6.27	4.65	5.75	1.97	4.52	3.52	5.33
Merged-chr2-30408585-1	chr2	30408485	30408685	+	731.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007760, intron 4 of 13)	intron (NM_007760, intron 4 of 13)	7163.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	10.9	5.79	3.42	6.03	4.91	8.78	1.33	3.93	9.64	8.03	10.55	6.27
Merged-chr2-45239884-2	chr2	45239809	45240009	+	731.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-122467.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	9.29	15.09	9.13	10.05	5.73	7.84	3.32	1.54	4.33	9.04	5.53	5.64
Merged-chr10-86885119-2	chr10	86885030	86885230	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	106125.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	1.62	6.04	5.13	6.84	11.45	2.2	11.63	7.32	9.05	5.02	8.54	9.4
Merged-chr2-169008868-2	chr2	169008771	169008971	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30602.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.63	8.8	11.41	5.63	7.36	13.8	6.64	23.97	8.85	5.52	16.58	7.52
Merged-chr14-122876378-2	chr14	122876289	122876489	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-36641.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	6.06	3.52	4.56	2.41	5.32	5.02	6.64	10.15	14.95	3.01	15.07	7.21
Merged-chr9-24395004-2	chr9	24394912	24395112	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108128.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.63	6.54	5.7	14.48	14.73	9.72	12.62	17.36	5.9	2.51	9.55	3.45
Merged-chr8-88099656-2	chr8	88099540	88099740	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	18967.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	10.5	5.79	3.99	3.22	9.82	15.05	0.0	2.97	11.8	7.53	11.05	5.95
Merged-chr1-172481303-2	chr1	172481197	172481397	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-916.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	7.67	6.54	7.99	5.63	3.68	8.15	6.31	7.49	11.41	5.02	11.56	8.14
Merged-chr6-129234610-2	chr6	129234506	129234706	+	731.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3439.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	8.88	6.79	15.97	9.65	4.5	10.03	9.3	10.65	13.96	4.02	4.02	6.27
Merged-chr12-100926427-3	chr12	100926317	100926517	+	731.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-18219.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	10.5	6.79	13.12	12.07	9.41	10.35	4.98	10.54	12.98	17.07	10.05	13.47
Merged-chr7-31125543-2	chr7	31125465	31125665	+	731.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	1458.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.23	7.04	3.42	3.22	5.32	7.53	3.99	7.63	7.67	8.54	12.06	6.58
Merged-chr1-175620008-2	chr1	175619924	175620124	+	731.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010209, intron 1 of 9)	RMER19B|LTR|ERVK	5611.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	3.23	5.28	1.14	4.83	9.41	7.84	8.3	11.21	9.05	9.54	10.05	7.83
Merged-chr3-146345386-3	chr3	146345288	146345488	+	731.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33556.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	9.69	5.28	9.13	7.24	5.73	9.09	4.98	19.65	9.44	15.57	13.57	14.41
Merged-chr1-155416323-2	chr1	155416216	155416416	+	731.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1128.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.86	2.52	6.85	9.65	16.77	8.78	6.31	12.31	9.83	19.08	10.05	13.47
Merged-chr16-94329510-2	chr16	94329463	94329663	+	731.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	1141.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	7.27	4.53	11.41	7.64	5.32	3.76	2.99	6.53	3.93	1.0	5.02	5.64
Merged-chr17-56242179-2	chr17	56242065	56242265	+	731.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029827)	promoter-TSS (NR_029827)	449.0	NR_155493	320593.0	Mm.125338	NR_155493		A230051N06Rik	-	RIKEN cDNA A230051N06 gene	ncRNA	8.88	4.53	4.56	5.63	9.0	10.66	4.32	4.85	10.23	10.04	13.57	5.64
Merged-chr6-127272817-3	chr6	127272684	127272884	+	731.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35183.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	8.48	4.02	14.83	9.25	7.36	6.27	7.64	6.34	8.46	4.52	22.61	10.34
Merged-chr17-46032629-3	chr17	46032499	46032699	+	731.555542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287058)	promoter-TSS (NM_001287058)	-222.0	NM_001287057	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	4.04	2.01	0.57	0.4	3.68	1.57	4.98	2.05	2.16	5.02	2.01	3.76
Merged-chr12-52501130-2	chr12	52501033	52501233	+	731.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14944.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	10.9	7.29	9.7	16.49	8.59	12.23	7.31	8.86	21.44	6.53	12.06	4.7
Merged-chrX-157801882-2	chrX	157801789	157801989	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16546.0	NM_001081667	245683.0	Mm.295846	NM_001081667	ENSMUSG00000047485	Klhl34	Gm388	kelch-like 34	protein-coding	6.06	4.53	5.7	5.63	10.64	4.39	3.32	8.07	9.24	3.51	12.06	9.08
Merged-chr4-155895401-1	chr4	155895301	155895501	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	3526.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	8.88	5.03	5.7	0.8	6.14	6.9	1.66	6.84	0.98	1.51	2.01	0.0
Merged-chr1-95366424-2	chr1	95366325	95366525	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	52797.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	1.62	1.01	6.85	8.85	3.27	1.88	7.31	14.33	11.41	7.53	8.04	5.95
Merged-chr10-87690979-3	chr10	87690833	87691033	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167332.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.83	4.78	4.56	6.03	3.27	4.08	6.31	6.17	8.85	4.02	13.57	6.58
Merged-chr14-31373014-2	chr14	31372909	31373109	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36371.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.04	2.01	7.99	4.83	1.64	7.21	8.3	8.5	8.85	2.01	11.56	2.19
Merged-chr13-64929241-2	chr13	64929146	64929346	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11840.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	13.73	9.56	14.26	17.7	8.59	21.95	6.98	18.81	0.0	0.0	1.51	0.0
Merged-chr17-56611538-2	chr17	56611437	56611637	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1766.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	8.08	3.27	9.7	6.84	6.14	7.84	2.66	7.35	9.64	3.51	4.02	9.4
Merged-chr13-110866858-1	chr13	110866758	110866958	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36641.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	5.25	7.29	10.27	2.41	9.82	3.14	8.3	6.11	8.26	9.04	5.53	9.71
Merged-chr11-77460724-1	chr11	77460624	77460824	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001291190)	TTS (NM_001291190)	-3189.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	2.42	3.27	1.71	1.61	3.68	4.39	9.63	1.43	6.49	6.53	9.04	2.19
Merged-chr4-41136549-3	chr4	41136427	41136627	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	506.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	7.27	5.79	3.99	8.04	7.77	6.9	5.31	7.21	12.0	11.05	14.57	14.72
Merged-chr13-12409333-2	chr13	12409245	12409445	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144835, intron 14 of 44)	intron (NM_144835, intron 14 of 44)	13970.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	4.85	5.79	8.56	7.24	5.32	5.33	7.97	6.56	11.41	12.05	5.53	1.57
Merged-chr5-21384772-2	chr5	21384684	21384884	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	12111.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.04	4.78	3.42	8.04	10.64	6.27	2.66	9.34	11.8	10.54	10.55	2.82
Merged-chr1-127776262-1	chr1	127776162	127776362	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	2098.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	4.85	6.04	15.97	9.65	6.55	9.41	2.33	7.23	7.67	6.03	12.56	2.82
Merged-chr5-110211489-2	chr5	110211405	110211605	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347389, intron 17 of 23)	MTB_Mm|LTR|ERVL-MaLR	-19499.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	3.63	7.04	8.56	8.04	7.77	4.39	4.98	7.4	13.57	6.03	13.57	7.83
Merged-chr19-17356484-3	chr19	17356428	17356628	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	CpG	139.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.33	3.52	2.28	14.08	4.09	6.27	3.65	8.05	7.87	6.03	7.03	2.82
Merged-chr2-28418241-2	chr2	28418145	28418345	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29696.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	4.04	3.27	5.7	4.83	4.5	9.09	4.32	6.53	11.41	1.51	9.55	8.14
Merged-chr8-80753496-2	chr8	80753411	80753611	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14052.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	2.42	5.53	2.28	4.02	6.55	13.17	6.98	7.09	12.98	10.04	8.54	5.01
Merged-chr14-51941915-2	chr14	51941805	51942005	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19132.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	4.44	14.59	2.28	11.66	8.18	8.47	11.96	6.31	2.56	4.52	5.02	2.82
Merged-chr18-38385162-4	chr18	38385074	38385274	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33733.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.42	6.29	9.13	12.07	10.64	8.15	6.98	4.63	10.23	10.54	7.54	12.84
Merged-chr3-61412789-2	chr3	61412748	61412948	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48341.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.44	2.01	1.14	4.42	7.77	2.82	3.99	5.83	2.75	5.52	4.52	0.94
Merged-chr3-104995885-3	chr3	104995734	104995934	+	731.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34125.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	1.21	6.29	4.56	5.23	12.27	3.45	8.3	2.69	5.7	6.53	10.05	13.16
Merged-chr4-3629040-3	chr4	3628938	3629138	+	731.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27468.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	12.52	6.79	13.69	9.25	11.05	5.64	12.95	11.5	10.82	6.53	21.61	6.58
Merged-chr9-72991649-2	chr9	72991545	72991745	+	731.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	6141.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	7.67	5.28	5.7	11.26	14.73	15.05	14.62	11.69	8.06	10.54	4.52	7.83
Merged-chr10-10733311-2	chr10	10733207	10733407	+	731.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114333, intron 6 of 9)	intron (NM_001114333, intron 6 of 9)	-17739.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	7.67	9.06	14.83	12.47	7.77	7.53	5.65	11.21	7.87	9.04	8.04	4.7
Merged-chr14-65598464-2	chr14	65598362	65598562	+	731.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5350.0	NM_028811	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	7.27	4.02	7.42	10.46	14.32	9.09	5.31	11.97	9.05	9.54	5.02	9.4
Merged-chr11-98700202-2	chr11	98700120	98700320	+	731.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	4.44	3.52	1.14	1.61	3.27	7.21	7.31	4.32	6.88	10.04	2.51	4.39
Merged-chr15-73505949-2	chr15	73505857	73506057	+	731.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6603.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	9.29	5.79	4.56	8.04	11.05	3.76	5.98	17.55	7.47	3.01	1.51	6.27
Merged-chr1-51498651-2	chr1	51498551	51498751	+	731.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-20252.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.85	3.52	7.99	1.21	3.68	7.53	5.31	7.65	9.83	4.02	6.53	7.21
Merged-chr11-95146261-2	chr11	95146144	95146344	+	731.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007867)	promoter-TSS (NM_007867)	-443.0	NM_007867	13394.0	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	10.09	9.81	7.42	13.27	6.95	4.39	3.65	8.5	6.69	5.52	7.54	8.46
Merged-chr8-128709439-2	chr8	128709344	128709544	+	731.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010578, intron 3 of 15)	B3|SINE|B2	23790.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.46	3.02	5.7	3.62	6.95	7.53	6.31	5.86	12.39	7.53	17.08	7.83
Merged-chr3-146685075-1	chr3	146684975	146685175	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-33758.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	4.85	5.28	1.71	6.84	7.77	8.15	2.99	6.08	4.13	12.55	6.53	4.07
Merged-chr2-93450867-3	chr2	93450762	93450962	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	1810.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	9.69	14.09	16.54	7.24	11.05	10.35	6.31	8.27	9.24	4.02	15.07	5.95
Merged-chr10-81411871-1	chr10	81411771	81411971	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152732)	TTS (NR_152732)	2296.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	4.04	5.03	7.99	2.41	13.09	10.03	4.32	7.77	10.03	7.03	2.01	3.76
Merged-chr7-126260981-1	chr7	126260881	126261081	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360811, intron 1 of 3)	intron (NM_001360811, intron 1 of 3)	-11515.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	9.29	7.8	9.13	4.02	6.55	9.09	1.33	4.32	8.26	6.03	8.54	7.21
Merged-chr7-80857365-3	chr7	80857282	80857482	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	8.08	7.04	10.27	4.83	10.23	16.31	3.32	7.04	14.95	10.04	17.08	6.58
Merged-chr7-114817716-3	chr7	114817613	114817813	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173767, intron 7 of 12)	intron (NM_173767, intron 7 of 12)	71947.0	NM_173767	233752.0	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	INSC spindle orientation adaptor protein	protein-coding	10.5	4.53	5.13	13.67	8.59	6.27	5.65	4.99	14.55	8.54	13.57	11.28
Merged-chr2-18677780-2	chr2	18677682	18677882	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007552, intron 1 of 9)	intron (NM_007552, intron 1 of 9)	764.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	4.85	8.05	14.83	11.26	11.45	14.42	9.97	9.22	6.29	2.51	7.03	4.39
Merged-chr17-79971475-3	chr17	79971376	79971576	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75353.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	17.36	11.82	10.84	6.84	3.68	3.45	8.3	6.9	6.49	11.55	31.15	12.22
Merged-chr13-20125199-3	chr13	20125077	20125277	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	34670.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	14.13	10.56	11.41	5.23	9.0	5.64	5.65	7.71	7.08	6.53	8.04	3.45
Merged-chr3-116341196-3	chr3	116341084	116341284	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	13060.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	10.5	8.05	4.56	10.05	4.91	7.53	3.32	7.6	10.82	4.52	10.05	5.01
Merged-chr12-100079913-1	chr12	100079813	100080013	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32418.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.81	2.26	5.7	7.24	1.64	6.59	8.64	5.8	7.87	2.51	11.05	5.64
Merged-chr5-24360938-1	chr5	24360838	24361038	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3881.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	8.08	5.03	1.14	2.01	4.91	5.96	6.64	4.88	8.26	7.53	5.53	2.82
Merged-chr19-16149271-3	chr19	16149182	16149382	+	731.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-14816.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	10.09	11.57	9.7	12.47	10.23	11.92	5.65	11.36	8.85	5.52	13.57	8.77
Merged-chr2-30134656-3	chr2	30134545	30134745	+	731.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146252, intron 1 of 11)	intron (NM_146252, intron 1 of 11)	899.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	7.27	7.8	14.26	11.66	6.55	15.05	1.66	12.22	8.26	6.53	13.06	7.21
Merged-chr2-52762722-3	chr2	52762655	52762855	+	731.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20606.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	10.5	6.79	10.84	7.24	7.77	15.68	8.3	15.84	15.74	11.55	11.05	9.08
Merged-chr5-93129668-3	chr5	93129555	93129755	+	731.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	36239.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	4.85	5.28	14.26	11.26	5.32	7.84	5.98	17.02	9.83	11.55	9.55	4.7
Merged-chr1-45872375-2	chr1	45872271	45872471	+	731.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53223.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	2.83	2.01	1.14	2.82	7.36	3.76	2.99	4.54	4.52	4.52	4.52	2.51
Merged-chr14-93729084-2	chr14	93728977	93729177	+	731.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	161592.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	5.65	2.01	2.28	7.24	7.36	1.88	9.97	16.04	9.24	0.5	16.08	7.52
Merged-chr2-60948373-2	chr2	60948269	60948469	+	731.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14835.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.25	5.79	5.7	3.22	7.77	11.29	3.65	10.54	10.03	8.03	12.06	6.89
Merged-chr12-70110829-2	chr12	70110718	70110918	+	731.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	811.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	7.27	8.05	0.57	14.88	6.14	12.23	8.64	11.33	3.34	4.52	3.52	9.08
Merged-chr17-78679620-2	chr17	78679527	78679727	+	731.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011500, intron 6 of 17)	Lx10|LINE|L1	56933.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	6.06	7.8	4.56	9.65	7.36	8.15	4.32	9.87	2.36	1.51	1.51	2.51
Merged-chr10-120191373-1	chr10	120191273	120191473	+	731.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	10224.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.5	1.14	1.61	0.0	4.08	0.66	0.84	13.37	9.54	20.1	10.65
Merged-chr17-67055852-2	chr17	67055756	67055956	+	731.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 5 of 32)	intron (NM_001357625, intron 5 of 32)	-29621.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	4.85	7.29	6.85	8.85	1.64	6.59	7.31	14.47	2.36	8.03	11.05	7.21
Merged-chr6-29557302-3	chr6	29557185	29557385	+	731.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177296, intron 17 of 22)	A-rich|Low_complexity|Low_complexity	28003.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	8.88	7.8	21.68	14.48	11.86	7.21	1.66	5.19	16.92	6.53	11.05	6.89
Merged-chr2-125122391-3	chr2	125122276	125122476	+	731.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162418, intron 1 of 14)	intron (NM_001162418, intron 1 of 14)	1284.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	9.69	9.31	6.85	4.02	16.36	18.19	10.96	11.02	11.6	14.06	11.05	9.08
Merged-chr9-22326193-3	chr9	22326125	22326325	+	731.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4465.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	10.5	1.01	7.99	2.41	7.77	4.7	2.33	5.55	10.42	10.04	12.56	7.21
Merged-chr2-58532405-3	chr2	58532323	58532523	+	731.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	28987.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	12.11	9.06	6.85	11.66	7.77	9.41	8.97	10.51	10.03	9.54	11.05	6.27
Merged-chr12-36155303-2	chr12	36155210	36155410	+	731.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1515.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	10.09	3.27	3.99	1.21	8.59	8.78	3.32	10.74	8.26	8.54	5.53	5.01
Merged-chrX-106130103-2	chrX	106130022	106130222	+	731.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-13153.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	7.67	3.27	2.28	9.65	11.86	10.35	7.97	24.53	11.01	4.02	12.56	7.83
Merged-chr18-54294876-3	chr18	54294785	54294985	+	731.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-127410.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	8.48	7.29	2.28	12.47	14.73	10.98	14.62	21.2	10.03	9.04	10.55	9.4
Merged-chr15-53349105-2	chr15	53349005	53349205	+	731.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA8|LINE|L1	-2922.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.02	3.52	6.85	5.63	15.14	5.33	9.97	9.48	8.26	9.04	11.05	3.76
Merged-chr9-7554554-3	chr9	7554444	7554644	+	731.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-3885.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	10.09	4.02	7.42	10.05	4.09	7.21	9.63	7.99	7.28	3.51	15.07	5.33
Merged-chr5-99476815-3	chr5	99476730	99476930	+	731.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-223903.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.65	8.05	5.7	8.45	19.64	8.15	12.29	16.96	13.37	9.04	16.08	5.95
Merged-chr11-108244442-2	chr11	108244337	108244537	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	99451.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	10.5	5.03	2.28	5.63	9.0	9.09	6.31	8.02	10.82	1.51	10.05	8.14
Merged-chr14-14002968-2	chr14	14002879	14003079	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9512.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	5.25	4.02	6.85	7.24	9.0	7.21	8.97	13.79	8.26	6.53	10.55	5.64
Merged-chr8-45337124-2	chr8	45337026	45337226	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153535, exon 14 of 14)	3' UTR (NM_153535, exon 14 of 14)	-3930.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	2.42	8.05	7.99	12.47	10.23	8.78	7.64	10.35	10.23	7.53	5.53	8.77
Merged-chr10-117885538-2	chr10	117885435	117885635	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39561.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.85	4.53	6.85	8.85	9.82	6.59	8.97	10.07	9.24	12.05	13.06	3.76
Merged-chr3-35931898-1	chr3	35931798	35931998	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	436.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	4.04	4.28	2.28	4.42	6.14	1.57	3.65	8.52	9.64	7.03	6.03	8.14
Merged-chr7-100505243-3	chr7	100505155	100505355	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	9560.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.85	5.03	4.56	8.85	7.36	7.21	1.99	6.28	18.49	22.09	35.17	32.27
Merged-chr11-115640591-1	chr11	115640491	115640691	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12296.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.81	0.75	1.14	0.4	3.27	8.47	2.66	5.44	8.26	2.01	3.01	5.95
Merged-chr2-129306697-2	chr2	129306598	129306798	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	3274.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.27	5.53	3.99	4.83	8.59	17.25	6.64	6.03	9.05	6.53	1.51	9.08
Merged-chr9-85342121-1	chr9	85342021	85342221	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14971.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.81	3.52	4.56	4.42	3.27	0.63	4.98	6.73	2.56	1.51	2.01	2.51
Merged-chr2-27595443-2	chr2	27595359	27595559	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80312.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	6.46	2.52	8.56	6.03	3.27	7.21	5.98	4.04	13.96	10.54	6.03	9.71
Merged-chr10-117033954-1	chr10	117033854	117034054	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11387.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	3.23	5.03	6.85	3.22	6.55	4.08	2.33	5.44	7.47	3.51	4.52	1.57
Merged-chr2-145998260-2	chr2	145998166	145998366	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63482.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	3.23	8.8	6.85	8.04	5.73	6.9	4.65	9.59	11.01	3.51	12.56	9.4
Merged-chr13-45392718-1	chr13	45392618	45392818	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	RSINE1|SINE|B4	2976.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.06	2.26	4.56	3.62	3.27	10.03	11.63	5.41	4.72	6.03	1.51	1.25
Merged-chr18-47945543-1	chr18	47945443	47945643	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22702.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.0	0.5	1.14	2.41	7.77	4.39	3.32	8.64	5.7	7.03	4.02	2.82
Merged-chr16-78473559-1	chr16	78473459	78473659	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-86757.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	1.62	2.52	0.0	1.61	4.91	5.02	6.64	6.5	1.18	2.01	0.5	0.94
Merged-chr15-76758561-1	chr15	76758461	76758661	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 2 of 10)	intron (NM_198420, intron 2 of 10)	-34716.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	9.29	5.03	4.56	10.46	9.41	4.7	1.66	7.07	8.06	11.05	4.02	4.39
Merged-chr5-65697344-1	chr5	65697244	65697444	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	512.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.81	2.26	5.13	5.63	5.73	6.59	5.31	3.79	3.54	13.56	6.53	3.13
Merged-chr12-36035813-2	chr12	36035697	36035897	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	6681.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.04	1.76	7.42	7.24	6.55	6.59	12.29	14.02	0.59	2.01	3.01	2.19
Merged-chr13-10686525-1	chr13	10686425	10686625	+	731.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-325722.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.81	0.0	0.0	0.0	3.27	4.39	2.33	7.07	10.42	9.54	8.04	16.29
Merged-chr19-56763883-1	chr19	56763783	56763983	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41511.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.85	2.77	3.99	1.61	7.77	6.59	7.31	7.71	5.11	13.05	4.02	2.82
Merged-chr11-50244656-2	chr11	50244548	50244748	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6116.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	7.67	3.27	0.0	2.41	7.36	12.23	10.3	4.77	10.62	16.57	7.03	6.58
Merged-chr1-53890525-2	chr1	53890424	53890624	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	41100.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.04	8.05	4.56	8.04	10.23	3.76	4.65	8.75	10.42	4.52	11.56	8.46
Merged-chr15-93318977-2	chr15	93318879	93319079	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	17956.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	8.88	9.06	1.14	14.08	3.27	2.2	7.64	7.23	6.1	0.5	9.04	2.19
Merged-chr6-114920783-2	chr6	114920687	114920887	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	1034.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	11.71	4.28	3.99	6.03	8.59	7.21	10.63	5.61	6.1	2.51	2.01	3.13
Merged-chr4-40144733-1	chr4	40144633	40144833	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1468.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.63	2.77	3.99	6.84	6.14	8.78	1.0	7.77	2.56	4.52	2.01	1.57
Merged-chr5-125392376-1	chr5	125392276	125392476	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2359.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.44	6.04	3.99	4.83	13.5	8.15	10.63	3.64	5.9	13.05	12.06	9.71
Merged-chr9-108343458-3	chr9	108343349	108343549	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4369.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	9.29	8.55	5.7	12.87	10.64	10.35	1.66	6.08	7.47	8.54	10.05	5.64
Merged-chr10-12592164-2	chr10	12592060	12592260	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	MTD|LTR|ERVL-MaLR	269575.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	10.9	2.52	4.56	15.28	0.0	4.39	2.33	7.35	8.26	9.54	17.08	3.76
Merged-chr1-88228589-1	chr1	88228489	88228689	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	1569.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	2.02	3.02	0.57	2.41	2.05	2.82	5.31	2.33	5.11	4.52	5.53	4.07
Merged-chr14-93701250-1	chr14	93701150	93701350	+	731.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	189419.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	0.0	0.0	1.61	0.0	0.63	1.33	0.81	16.52	7.03	12.06	1.88
Merged-chr16-36654719-1	chr16	36654619	36654819	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11358.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	9.29	6.79	0.0	3.22	3.27	5.02	0.0	2.66	4.52	2.51	6.03	1.25
Merged-chr10-125325340-2	chr10	125325230	125325430	+	730.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	3633.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	1.21	5.03	5.7	5.23	8.59	6.9	10.3	18.53	7.67	11.05	10.55	9.4
Merged-chr5-104509615-2	chr5	104509505	104509705	+	730.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166581, intron 1 of 1)	URR1B|DNA|hAT-Charlie	1253.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	4.44	4.53	4.56	2.41	5.73	7.84	4.98	6.11	15.34	10.04	21.1	10.34
Merged-chr10-119610592-2	chr10	119610457	119610657	+	730.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	151142.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	2.83	2.26	0.57	3.62	2.45	6.27	7.31	7.01	7.47	8.03	9.04	10.96
Merged-chr14-45047546-3	chr14	45047371	45047571	+	730.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	59360.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	10.09	5.03	7.42	4.42	2.45	4.7	8.3	4.35	14.36	4.02	9.04	6.58
Merged-chr7-3595375-2	chr7	3595276	3595476	+	730.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20781.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	6.46	4.78	6.28	6.03	14.32	16.62	4.65	6.84	12.19	9.04	18.59	9.4
Merged-chr13-49321649-2	chr13	49321549	49321749	+	730.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12441.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	8.08	10.82	10.84	2.41	8.59	8.15	3.32	7.07	5.7	7.03	3.52	7.21
Merged-chr4-59864906-2	chr4	59864785	59864985	+	730.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50171.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	6.06	2.77	7.99	10.46	7.36	9.72	13.29	14.3	3.15	7.03	6.03	4.39
Merged-chr4-42954575-2	chr4	42954493	42954693	+	730.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355439, intron 3 of 4)	intron (NM_001355439, intron 3 of 4)	4197.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	6.06	6.29	10.84	2.82	9.41	8.15	4.32	6.76	6.49	4.02	10.05	6.27
Merged-chr3-55122618-3	chr3	55122490	55122690	+	730.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144988, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	10424.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	6.06	8.05	1.14	7.64	8.59	4.7	10.96	9.48	10.62	10.54	4.52	8.46
Merged-chr13-47215609-3	chr13	47215522	47215722	+	730.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21619.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	12.92	6.04	19.4	8.04	15.14	11.29	5.31	12.2	11.21	6.03	11.05	7.21
Merged-chr7-116371754-3	chr7	116371660	116371860	+	730.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-37570.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	5.25	6.04	16.54	1.21	9.41	7.84	4.32	10.35	13.18	8.54	11.56	7.21
Merged-chr10-29357736-2	chr10	29357630	29357830	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284279)	promoter-TSS (NM_001284279)	-17.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	6.46	2.01	5.7	2.82	4.91	5.02	8.3	6.98	12.78	9.04	9.04	1.88
Merged-chr10-31557365-2	chr10	31557275	31557475	+	730.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	52350.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	6.46	6.79	17.68	8.45	3.68	5.64	4.98	8.3	4.13	6.53	3.52	1.88
Merged-chr5-39831393-2	chr5	39831278	39831478	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186747.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	2.02	3.02	1.14	1.61	8.18	8.78	4.32	10.35	11.01	7.03	8.04	7.52
Merged-chr12-33035945-1	chr12	33035845	33036045	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	56930.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	6.46	1.76	13.69	4.83	9.41	7.53	5.98	7.43	4.72	4.52	3.52	4.39
Merged-chr5-113619313-2	chr5	113619206	113619406	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	24297.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.23	1.51	3.42	6.44	4.09	6.27	9.97	16.23	9.05	6.03	15.07	7.52
Merged-chr4-3774222-2	chr4	3774186	3774386	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	BGLII_B|LTR|ERVK	59322.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	4.44	1.76	6.85	4.02	2.45	3.76	3.65	2.55	4.72	6.53	5.53	2.82
Merged-chr6-57823681-2	chr6	57823586	57823786	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1439.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.06	5.79	9.13	6.44	10.64	6.27	7.97	10.49	6.49	12.55	7.03	11.28
Merged-chr4-135899262-2	chr4	135899164	135899364	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009924, intron 1 of 1)	intron (NM_009924, intron 1 of 1)	4075.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	2.83	1.76	10.27	3.22	14.32	12.54	5.98	18.73	9.24	12.05	10.55	9.71
Merged-chr4-131921670-2	chr4	131921574	131921774	+	730.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-97.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	12.52	9.06	2.28	8.04	7.36	22.89	10.63	7.15	16.33	4.52	4.52	5.64
Merged-chr1-193905892-2	chr1	193905788	193905988	+	730.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	316871.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	8.88	12.58	4.56	0.0	16.36	15.05	6.31	8.38	8.85	12.55	1.51	2.51
Merged-chr19-56731698-3	chr19	56731603	56731803	+	730.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9331.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.65	5.79	13.69	0.0	12.68	15.99	9.97	9.67	10.42	13.05	3.01	4.07
Merged-chr3-58517424-1	chr3	58517324	58517524	+	730.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8397.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	5.65	1.26	11.41	4.83	4.91	7.53	3.32	3.11	9.64	7.53	16.08	8.46
Merged-chr3-89515676-3	chr3	89515576	89515776	+	730.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4488.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	9.69	6.29	2.28	10.05	21.68	35.43	14.28	18.79	6.29	11.55	11.56	14.41
Merged-chr10-96171774-1	chr10	96171674	96171874	+	730.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-54433.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	2.02	2.77	13.69	6.84	6.14	5.64	7.31	9.39	4.13	7.53	7.54	1.88
Merged-chr14-77141806-2	chr14	77141676	77141876	+	730.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14987.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	6.86	6.04	2.28	2.82	5.32	1.88	4.65	9.31	5.7	9.04	12.56	1.25
Merged-chr10-19012743-3	chr10	19012630	19012830	+	730.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-767.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.86	12.07	10.27	4.42	19.64	19.44	2.99	5.94	14.55	10.04	12.56	5.64
Merged-chr15-5738316-2	chr15	5738215	5738415	+	730.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL1|LINE|L1	241997.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.44	12.32	2.28	6.44	6.95	9.72	9.3	5.86	9.44	5.02	13.06	14.41
Merged-chr8-27177365-2	chr8	27177277	27177477	+	730.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2731.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	6.06	3.02	5.13	5.63	11.45	5.96	10.3	8.3	10.62	12.55	13.57	10.65
Merged-chr4-34494582-2	chr4	34494489	34494689	+	730.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56026.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.46	3.52	7.42	4.02	11.05	10.66	3.99	10.49	6.49	4.02	10.55	9.71
Merged-chr10-41896583-3	chr10	41896483	41896683	+	730.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013370, intron 4 of 9)	L1MC2|LINE|L1	9144.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	11.31	7.29	9.7	10.05	10.23	6.27	2.99	12.25	14.36	13.05	2.51	5.95
Merged-chr4-155654543-2	chr4	155654439	155654639	+	730.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001256107)	TTS (NM_001256107)	-1155.0	NM_011985	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	11.71	8.3	17.68	10.05	3.27	5.96	3.65	4.57	1.57	5.52	6.03	1.57
Merged-chr15-100457546-3	chr15	100457435	100457635	+	730.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11476.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	10.9	7.04	10.84	7.64	8.18	10.98	5.98	8.36	18.1	9.04	11.05	10.96
Merged-chr2-165927561-3	chr2	165927469	165927669	+	730.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42731.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	11.31	4.53	18.83	12.87	11.45	10.03	17.94	15.56	10.82	9.54	7.54	5.01
Merged-chr10-105957651-3	chr10	105957546	105957746	+	730.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116167.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	7.67	11.57	18.25	26.95	17.59	10.98	15.61	23.05	9.24	6.03	8.54	3.76
Merged-chr14-105328641-2	chr14	105328546	105328746	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69973.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	11.31	8.55	10.27	6.44	4.5	4.7	8.64	11.52	9.24	7.53	11.05	7.52
Merged-chr4-59360894-2	chr4	59360787	59360987	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	L1MC4|LINE|L1	77746.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.85	7.04	4.56	2.41	6.14	4.7	1.33	6.9	9.44	12.55	17.59	11.28
Merged-chr2-34600052-2	chr2	34599956	34600156	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	155176.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	9.69	5.53	10.27	5.23	6.95	10.66	6.64	9.87	4.33	8.54	10.55	5.01
Merged-chr9-90162840-1	chr9	90162740	90162940	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001326294)	promoter-TSS (NM_001326294)	-138.0	NM_001003911	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	7.67	6.04	0.0	2.41	6.95	5.96	6.64	6.45	8.46	4.02	8.04	5.95
Merged-chr10-117842162-1	chr10	117842062	117842262	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	3812.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.85	2.26	2.28	2.41	5.32	5.96	2.66	2.47	4.92	3.01	5.53	0.63
Merged-chr1-169444778-1	chr1	169444678	169444878	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	86686.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	11.31	10.56	15.4	10.05	3.27	0.63	0.0	1.68	1.38	0.0	0.5	1.88
Merged-chr7-130009202-2	chr7	130009101	130009301	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47036.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	10.5	6.29	6.85	11.66	4.09	4.7	2.99	7.12	1.77	11.05	8.54	7.83
Merged-chr13-46670253-1	chr13	46670153	46670353	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033192, exon 1 of 5)	exon (NM_001033192, exon 1 of 5)	731.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	3.63	3.27	2.85	2.01	9.41	2.51	4.98	4.26	2.16	6.03	1.51	2.19
Merged-chr9-121572046-2	chr9	121571955	121572155	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14965.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	4.44	4.28	7.99	3.62	9.82	17.56	8.64	9.59	7.28	13.56	17.08	8.77
Merged-chr12-76177210-1	chr12	76177110	76177310	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	49.0	NM_010157	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	4.85	3.52	2.28	11.66	0.41	5.96	6.31	5.21	3.15	6.03	5.02	3.45
Merged-chr10-23081388-2	chr10	23081296	23081496	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-261268.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	6.86	3.77	11.98	2.82	6.55	1.25	4.98	9.64	3.54	4.02	6.53	6.27
Merged-chr11-103214435-2	chr11	103214338	103214538	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177801, intron 1 of 4)	Lx5b|LINE|L1	3994.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	7.27	6.04	8.56	4.02	5.73	13.8	3.99	7.71	13.37	4.02	11.05	8.14
Merged-chr7-139979610-3	chr7	139979515	139979715	+	730.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-860.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	10.09	9.31	11.98	5.63	8.18	8.47	5.98	15.11	9.24	7.53	15.07	5.95
Merged-chr11-35833461-3	chr11	35833374	35833574	+	730.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025936, intron 1 of 14)	intron (NM_025936, intron 1 of 14)	1054.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	3.23	7.55	6.85	7.64	9.41	5.96	4.98	8.94	11.6	12.05	9.04	4.39
Merged-chr15-83564369-3	chr15	83564259	83564459	+	730.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009775, intron 1 of 3)	intron (NM_009775, intron 1 of 3)	786.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	9.29	8.55	2.28	14.48	6.14	10.98	7.31	5.13	11.01	9.04	6.53	5.33
Merged-chr16-24973167-2	chr16	24973066	24973266	+	730.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.85	3.02	9.7	7.64	15.55	5.64	8.3	16.85	11.6	11.05	9.55	8.77
Merged-chr5-114620443-3	chr5	114620340	114620540	+	730.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37981.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	11.31	6.54	5.7	3.22	10.64	12.54	3.65	5.13	14.75	13.56	15.07	5.33
Merged-chr6-29544101-2	chr6	29544009	29544209	+	730.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14827.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	5.65	8.8	8.56	8.04	10.64	14.11	13.95	14.69	5.7	5.52	4.02	6.58
Merged-chr18-62045178-2	chr18	62045064	62045264	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92089.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.04	3.52	12.55	9.25	10.23	14.42	15.61	11.75	7.87	14.56	8.04	8.14
Merged-chr14-31662183-2	chr14	31662091	31662291	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025295, exon 2 of 4)	exon (NM_025295, exon 2 of 4)	21134.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	5.25	7.55	10.84	6.44	8.59	5.33	5.98	5.8	8.06	6.53	10.05	7.21
Merged-chr5-64341857-2	chr5	64341756	64341956	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	L1ME4c|LINE|L1	111499.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.23	3.52	1.71	5.63	8.59	4.08	6.64	7.12	7.47	8.03	14.07	3.45
Merged-chr18-9493458-2	chr18	9493374	9493574	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43320.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.85	4.78	6.28	9.65	15.14	7.84	10.96	19.4	13.37	9.04	7.03	6.58
Merged-chr6-51743608-1	chr6	51743508	51743708	+	730.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	198315.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	8.08	5.79	9.13	6.84	7.77	6.27	7.31	8.38	17.7	7.53	8.04	4.39
Merged-chr13-56626700-3	chr13	56626600	56626800	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 6 of 16)	L3b|LINE|CR1	17114.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	7.67	6.54	19.4	10.46	17.59	13.17	17.61	23.58	9.05	8.03	13.06	6.89
Merged-chr5-34544293-3	chr5	34544191	34544391	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	926.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	8.48	9.31	9.7	7.64	13.91	1.88	5.98	10.12	10.23	7.53	11.05	8.46
Merged-chr7-5064241-3	chr7	5064147	5064347	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	2104.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	10.09	8.55	8.56	10.05	8.18	5.33	1.66	7.54	9.44	1.51	16.08	7.83
Merged-chr2-27418276-3	chr2	27418185	27418385	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	9323.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	13.33	12.58	11.41	10.46	7.77	10.66	2.33	12.62	12.19	6.53	8.04	9.08
Merged-chr1-125428601-3	chr1	125428514	125428714	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	7113.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	7.67	4.78	4.56	3.22	4.09	12.23	3.32	7.77	11.6	15.06	10.05	2.82
Merged-chr10-127634665-3	chr10	127634581	127634781	+	730.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8305.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	4.85	8.05	16.54	3.22	8.59	25.09	11.29	15.28	10.23	7.53	13.06	9.08
Merged-chr1-95468300-2	chr1	95468199	95468399	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154671.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	1.62	1.51	5.13	1.61	9.41	7.21	9.97	7.54	11.21	15.57	9.55	2.19
Merged-chr5-137095388-2	chr5	137095280	137095480	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20827.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	3.63	2.26	5.7	3.62	3.27	6.9	9.3	3.7	13.77	14.56	20.6	6.27
Merged-chr3-129823504-2	chr3	129823400	129823600	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009102)	promoter-TSS (NM_009102)	-995.0	NM_009102	20132.0	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	6.86	7.04	11.41	0.8	15.55	9.41	4.65	12.28	11.6	5.02	9.55	7.83
Merged-chr9-99062712-2	chr9	99062616	99062816	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 14 of 23)	intron (NM_029094, intron 14 of 23)	-27026.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	4.85	6.04	0.0	4.83	2.86	5.96	8.97	5.3	12.78	17.07	13.06	4.39
Merged-chr11-6628742-2	chr11	6628622	6628822	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2655.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	4.04	4.28	5.7	8.04	3.68	7.21	1.99	4.23	11.41	14.56	8.04	7.21
Merged-chr2-138311096-3	chr2	138311006	138311206	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32613.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	7.27	6.79	12.55	16.89	9.0	6.27	10.96	14.07	8.06	6.53	17.59	7.83
Merged-chr4-140684621-3	chr4	140684486	140684686	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16887.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.44	14.84	0.57	7.24	2.45	9.72	6.64	4.29	5.51	3.51	7.03	5.64
Merged-chr18-35740146-3	chr18	35740054	35740254	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028261, intron 1 of 7)	intron (NM_028261, intron 1 of 7)	400.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.65	6.79	7.42	3.62	7.77	4.39	3.65	11.07	11.6	13.05	17.08	11.28
Merged-chr13-56774477-3	chr13	56774385	56774585	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302372, intron 11 of 11)	intron (NM_001302372, intron 11 of 11)	70817.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	5.65	7.55	13.69	8.85	11.45	9.72	3.65	10.88	9.24	11.55	12.56	10.96
Merged-chr7-126135616-2	chr7	126135513	126135713	+	730.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-53202.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	1.62	5.53	2.28	8.45	9.0	9.09	8.3	9.06	13.96	11.55	2.51	7.21
Merged-chr9-98298987-3	chr9	98298877	98299077	+	730.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	2407.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	7.67	9.81	9.13	7.64	9.82	26.34	6.98	14.24	13.37	10.04	15.07	6.27
Merged-chr9-124118683-3	chr9	124118598	124118798	+	730.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2845.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	8.88	7.04	11.41	4.02	10.23	14.42	1.99	10.21	9.83	22.59	20.1	8.46
Merged-chr3-60511533-3	chr3	60511398	60511598	+	730.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	10319.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.85	6.79	7.42	5.23	1.23	0.31	1.66	1.43	5.51	5.52	8.04	5.33
Merged-chr14-63412260-2	chr14	63412175	63412375	+	730.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4912.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	8.88	0.5	2.85	2.41	11.05	5.64	6.64	18.56	9.05	1.51	2.01	7.21
Merged-chr15-84942824-3	chr15	84942714	84942914	+	730.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016714, exon 8 of 8)	3' UTR (NM_016714, exon 8 of 8)	8809.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	8.08	9.31	7.42	17.29	9.0	11.29	7.64	8.61	11.41	6.03	12.56	9.4
Merged-chr8-84813245-2	chr8	84813151	84813351	+	730.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9572.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	10.9	3.27	9.7	4.42	8.18	7.84	1.66	4.91	12.59	19.08	15.58	5.33
Merged-chr17-87181858-2	chr17	87181744	87181944	+	730.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13098.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	8.08	4.53	7.99	8.85	19.23	7.84	6.31	12.5	9.44	10.54	8.04	12.22
Merged-chr2-28699887-3	chr2	28699761	28699961	+	730.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027283)	promoter-TSS (NM_027283)	-210.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	2.83	1.51	8.56	1.61	9.82	6.27	2.66	2.5	12.39	9.04	4.52	6.27
Merged-chr13-83524318-2	chr13	83524208	83524408	+	730.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	-435.0	NM_001347567	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	6.86	4.78	7.42	14.08	10.64	10.98	4.65	13.21	2.95	3.01	7.54	2.19
Merged-chr11-77494350-3	chr11	77494219	77494419	+	730.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	907.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	8.08	9.56	3.99	4.83	9.0	13.17	8.3	4.46	8.65	9.04	7.54	4.07
Merged-chr19-34637082-3	chr19	34637005	34637205	+	730.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053217, intron 1 of 2)	Lx5|LINE|L1	3638.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	8.88	9.31	4.56	4.02	11.86	8.15	5.31	3.87	10.23	6.53	9.55	7.21
Merged-chr11-120749610-3	chr11	120749517	120749717	+	730.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17596.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	10.09	3.27	9.7	8.85	11.05	15.05	7.64	7.12	14.55	8.54	11.56	6.89
Merged-chr5-124438474-3	chr5	124438387	124438587	+	730.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1443.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	7.27	8.05	10.27	10.05	6.14	8.78	8.64	11.44	12.0	5.52	4.52	7.52
Merged-chr17-22431870-1	chr17	22431770	22431970	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198003, intron 2 of 6)	intron (NM_198003, intron 2 of 6)	7668.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.63	7.04	4.56	2.41	6.55	6.27	2.99	7.04	4.92	6.53	10.05	11.28
Merged-chr2-90552693-2	chr2	90552627	90552827	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	27920.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.06	7.8	4.56	8.45	5.73	13.17	3.65	2.72	1.18	3.51	3.01	2.82
Merged-chr10-76513398-2	chr10	76513296	76513496	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019434, intron 28 of 28)	MTD-int|LTR|ERVL-MaLR	-18209.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	17.36	9.56	3.99	4.42	4.91	10.66	2.66	3.87	10.82	4.02	15.58	7.52
Merged-chr13-95961277-1	chr13	95961177	95961377	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-69355.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.81	0.75	0.57	0.8	3.68	1.57	5.98	4.43	11.41	11.05	14.07	6.89
Merged-chr3-96598315-1	chr3	96598215	96598415	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1679.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	4.44	4.28	9.7	9.25	4.5	9.41	7.31	7.63	4.72	5.02	12.56	4.7
Merged-chr3-31110338-1	chr3	31110238	31110438	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	15280.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	1.62	3.52	5.13	2.41	3.27	4.39	8.97	2.55	2.95	2.51	5.02	7.21
Merged-chr9-45395231-1	chr9	45395131	45395331	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_022004, exon 8 of 8)	3' UTR (NM_022004, exon 8 of 8)	-4478.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	5.25	4.53	14.26	6.03	7.77	10.35	12.62	9.25	0.59	4.02	7.54	4.7
Merged-chr1-92973762-1	chr1	92973662	92973862	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	643.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	1.62	2.01	4.56	1.61	1.64	2.51	1.0	0.34	1.97	11.05	3.52	5.01
Merged-chr16-19967201-2	chr16	19967104	19967304	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	15845.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	5.65	5.03	7.99	4.83	6.95	7.84	8.64	9.84	9.05	2.51	10.55	4.39
Merged-chr8-8973573-1	chr8	8973473	8973673	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	158715.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	1.21	2.52	0.57	2.41	6.14	6.9	0.33	7.29	2.16	1.0	1.51	3.76
Merged-chr17-78604128-1	chr17	78604028	78604228	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96065.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	4.44	4.02	5.7	9.25	4.09	6.9	4.32	5.69	5.51	1.51	8.54	1.25
Merged-chr9-25522714-2	chr9	25522624	25522824	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	41127.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.81	5.28	3.42	5.63	6.14	5.33	1.99	9.11	10.23	3.51	10.55	1.25
Merged-chr13-21783878-3	chr13	21783815	21784015	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	-518.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	9.29	7.8	7.99	4.02	5.73	10.03	6.98	5.69	10.82	14.06	9.04	6.58
Merged-chr17-71966426-1	chr17	71966326	71966526	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007439, intron 9 of 28)	intron (NM_007439, intron 9 of 28)	184479.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.83	1.51	3.42	0.0	5.73	3.45	3.65	6.95	2.36	0.5	2.01	0.0
Merged-chr19-17137021-1	chr19	17136921	17137121	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	180903.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	2.83	1.51	0.57	2.41	11.86	6.27	3.65	5.21	3.54	2.51	2.51	4.07
Merged-chr7-114460040-1	chr7	114459940	114460140	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	Lx5b|LINE|L1	44786.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.4	3.52	2.28	3.22	2.45	4.08	6.64	5.41	9.83	0.5	6.53	4.7
Merged-chr8-75196322-1	chr8	75196222	75196422	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17622.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	10.9	2.26	4.56	7.24	6.55	4.39	5.65	10.82	7.08	12.05	8.54	4.07
Merged-chr14-122049288-1	chr14	122049188	122049388	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14614.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.83	4.02	7.42	4.83	6.95	8.47	4.65	6.56	7.67	11.55	3.01	4.39
Merged-chr2-45103014-1	chr2	45102914	45103114	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7263.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.23	7.55	0.0	0.0	9.82	10.03	2.99	1.91	5.11	8.03	1.0	6.58
Merged-chr8-24546444-2	chr8	24546329	24546529	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	29904.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	7.27	2.52	0.0	8.04	8.18	8.15	3.65	9.7	8.85	7.03	11.56	7.52
Merged-chr2-44963300-1	chr2	44963200	44963400	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	59877.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	4.44	4.28	4.56	0.8	13.91	5.96	7.31	7.07	5.7	6.03	6.53	6.58
Merged-chr5-114915973-1	chr5	114915873	114916073	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7267.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	2.02	1.76	5.13	7.24	7.77	7.21	1.33	7.21	7.47	2.51	2.51	4.7
Merged-chr4-135382532-1	chr4	135382432	135382632	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	3140.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	4.04	6.29	2.28	3.62	3.68	10.03	2.33	6.84	11.6	7.53	5.53	4.07
Merged-chr11-22807607-2	chr11	22807499	22807699	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	52136.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	12.92	5.79	13.12	12.87	7.36	8.78	9.63	10.01	5.31	6.03	5.53	9.4
Merged-chr2-77202156-1	chr2	77202056	77202256	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 10 of 17)	intron (NM_175465, intron 10 of 17)	-31521.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	4.04	0.0	0.0	2.41	1.23	4.7	6.64	9.53	8.26	2.01	5.53	5.01
Merged-chr11-79125992-1	chr11	79125892	79126092	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	RSINE1|SINE|B4	20481.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.65	5.53	4.56	5.23	2.86	5.64	6.64	6.28	2.75	3.51	1.0	0.0
Merged-chr3-101012301-1	chr3	101012201	101012401	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 5 of 8)	intron (NM_001167906, intron 5 of 8)	17194.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	4.44	4.02	7.99	3.22	6.14	10.03	6.98	3.5	8.46	5.52	6.03	9.71
Merged-chr3-54111355-1	chr3	54111255	54111455	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44702.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.81	2.01	0.0	0.0	2.45	1.88	8.3	7.18	5.9	5.02	13.57	3.13
Merged-chr12-44548147-1	chr12	44548047	44548247	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146031, intron 10 of 27)	intron (NM_001146031, intron 10 of 27)	219262.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	7.67	2.77	5.7	5.23	6.95	0.0	3.32	6.87	0.98	1.0	2.01	1.57
Merged-chr10-28485831-1	chr10	28485731	28485931	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 11 of 30)	intron (NM_001359356, intron 11 of 30)	-182529.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	1.76	0.57	3.62	8.18	4.08	2.99	6.73	2.16	1.0	2.01	1.57
Merged-chr2-129599503-2	chr2	129599399	129599599	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4037.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	11.31	4.02	3.42	3.22	9.41	6.27	9.63	7.88	9.05	6.03	9.04	16.6
Merged-chr18-67290513-3	chr18	67290421	67290621	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	1298.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.85	5.53	11.98	9.65	12.68	8.78	9.97	12.9	7.08	14.06	11.05	5.01
Merged-chr19-46444455-1	chr19	46444355	46444555	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 3 of 11)	intron (NM_001025391, intron 3 of 11)	47559.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	4.85	7.04	3.42	2.82	6.95	6.9	3.99	8.41	8.06	8.03	13.06	3.45
Merged-chr12-80358023-1	chr12	80357923	80358123	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177267, intron 7 of 8)	intron (NM_177267, intron 7 of 8)	33654.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	2.26	5.7	0.0	10.23	4.7	5.98	7.6	2.95	2.51	2.51	3.76
Merged-chr14-61083869-1	chr14	61083769	61083969	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37014.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	4.56	1.61	0.0	2.51	5.65	3.31	6.69	10.54	23.62	11.59
Merged-chr9-114368286-1	chr9	114368186	114368386	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040383)	promoter-TSS (NR_040383)	-38.0	NR_040383	75116.0	Mm.72675	NR_040383	ENSMUSG00000074039	4930520O04Rik	-	RIKEN cDNA 4930520O04 gene	ncRNA	8.88	3.02	1.14	4.02	2.05	3.14	6.64	5.21	1.97	5.02	4.02	1.57
Merged-chr11-101658969-1	chr11	101658869	101659069	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6572.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	17.36	9.81	11.98	9.65	4.09	17.56	2.99	6.06	12.39	3.51	10.05	11.59
Merged-chr9-120586752-2	chr9	120586664	120586864	+	729.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.85	4.53	6.28	2.01	11.05	21.01	6.98	6.53	12.19	14.06	10.55	10.96
Merged-chr9-66833431-3	chr9	66833275	66833475	+	729.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	1331.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	8.08	3.52	3.42	9.25	4.09	7.21	6.31	11.92	11.21	3.01	1.51	4.7
Merged-chr10-17726978-3	chr10	17726878	17727078	+	729.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3750.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.25	7.29	5.7	7.24	10.23	14.74	8.64	12.7	10.42	9.54	7.03	10.65
Merged-chr13-21158997-3	chr13	21158886	21159086	+	729.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15931.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	6.06	6.29	3.42	4.83	7.77	10.66	5.31	16.49	12.19	12.05	22.11	11.9
Merged-chr8-72492248-2	chr8	72492147	72492347	+	729.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177766, exon 1 of 6)	exon (NM_177766, exon 1 of 6)	367.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	8.88	5.53	3.42	7.24	10.23	4.08	6.98	6.45	10.82	10.04	12.06	10.65
Merged-chr3-65891284-2	chr3	65891181	65891381	+	729.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66968.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	10.9	8.05	8.56	13.67	0.82	4.39	2.99	3.45	19.47	6.03	11.56	7.21
Merged-chrX-13846069-2	chrX	13845938	13846138	+	729.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001284504, exon 1 of 24)	exon (NM_001284504, exon 1 of 24)	518.0	NM_001284505	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	3.63	7.55	15.4	8.85	5.73	2.82	3.99	5.07	9.24	7.03	10.55	4.39
Merged-chr6-17612443-2	chr6	17612340	17612540	+	729.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-24570.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	8.88	8.05	6.85	4.02	8.18	6.9	13.95	3.98	12.78	17.57	20.1	10.96
Merged-chr8-120738915-3	chr8	120738810	120739010	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301811, exon 1 of 9)	5' UTR (NM_001301811, exon 1 of 9)	271.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.27	5.79	12.55	8.45	2.86	5.02	23.58	12.39	21.83	7.03	28.64	7.83
Merged-chr15-85090957-2	chr15	85090860	85091060	+	729.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080470, exon 17 of 25)	exon (NM_080470, exon 17 of 25)	40997.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	7.67	4.02	6.85	7.64	8.18	10.03	7.31	10.6	7.47	14.56	13.57	7.21
Merged-chr4-12140915-3	chr4	12140808	12141008	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028226, intron 1 of 2)	CpG	791.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	4.85	9.31	17.11	4.42	4.5	5.33	13.29	4.49	8.26	6.53	11.56	11.9
Merged-chr4-19697150-3	chr4	19697024	19697224	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	11880.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	6.46	4.53	3.42	7.64	5.73	4.08	5.31	8.07	9.24	11.55	12.56	3.45
Merged-chr10-88409989-3	chr10	88409897	88410097	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 2 of 20)	MLTR25A|LTR|ERVK	30585.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	11.31	5.03	15.97	9.25	9.41	8.47	8.64	8.27	12.59	6.03	11.56	11.28
Merged-chr15-100637135-5	chr15	100637008	100637208	+	729.82666	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174992)	promoter-TSS (NM_174992)	-168.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	6.06	12.32	13.12	12.07	7.77	5.96	14.28	8.24	4.33	3.01	4.52	5.01
Merged-chr15-82896499-3	chr15	82896406	82896606	+	729.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027799, exon 1 of 1)	non-coding (NR_027799, exon 1 of 1)	1955.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	9.69	6.29	9.7	15.28	4.91	9.09	5.98	5.92	15.14	5.02	9.04	8.77
Merged-chr9-61704008-3	chr9	61703889	61704089	+	729.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210521.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	5.65	9.06	11.41	3.22	10.23	6.59	5.98	5.13	17.11	10.04	9.55	7.52
Merged-chr13-20171256-2	chr13	20171148	20171348	+	729.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	80741.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.48	5.79	13.12	8.04	10.23	5.33	6.31	11.61	9.64	3.01	7.03	2.51
Merged-chr3-107754821-3	chr3	107754738	107754938	+	729.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007778, intron 3 of 8)	intron (NM_007778, intron 3 of 8)	5631.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	6.06	6.29	11.41	6.44	4.5	6.9	8.64	6.62	12.39	15.06	6.53	6.89
Merged-chr18-62250287-3	chr18	62250182	62250382	+	729.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70182.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	13.33	7.55	14.26	7.24	11.86	14.42	7.64	10.91	12.98	9.04	17.59	6.89
Merged-chr6-136520445-1	chr6	136520345	136520545	+	729.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	1594.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.62	4.28	1.14	2.01	11.05	4.39	0.0	2.16	11.21	14.56	9.55	5.95
Merged-chr9-48559906-2	chr9	48559807	48560007	+	729.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45216.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	8.08	13.83	1.14	6.44	13.09	6.9	1.99	6.36	5.7	2.51	3.01	9.08
Merged-chr7-133079112-3	chr7	133079004	133079204	+	729.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	2756.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	12.92	4.53	11.41	12.47	14.73	8.15	9.97	10.29	10.62	14.06	14.57	7.83
Merged-chr6-54655912-1	chr6	54655812	54656012	+	729.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25712.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	1.21	4.28	0.0	5.23	15.14	10.66	9.3	5.75	0.98	1.51	1.0	0.63
Merged-chr4-150864132-2	chr4	150864035	150864235	+	729.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	9065.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	17.36	10.06	11.41	2.82	5.73	8.47	5.31	3.76	5.7	7.03	1.0	3.76
Merged-chr2-128122604-1	chr2	128122504	128122704	+	729.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028765, intron 17 of 17)	intron (NM_028765, intron 17 of 17)	-3434.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.85	3.52	5.13	2.41	9.82	10.35	2.66	5.78	9.24	5.52	6.03	5.01
Merged-chr1-131021671-3	chr1	131021584	131021784	+	729.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010548, intron 3 of 4)	intron (NM_010548, intron 3 of 4)	1839.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	12.92	8.3	10.84	5.63	13.5	8.15	3.99	5.1	22.42	13.05	23.62	8.77
Merged-chr1-131393845-1	chr1	131393745	131393945	+	729.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-114282.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.23	5.28	6.28	4.83	9.0	8.15	10.63	9.03	8.46	5.52	20.6	4.7
Merged-chr1-136551122-2	chr1	136551025	136551225	+	729.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73776.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	8.08	6.29	5.13	1.21	9.41	2.82	5.98	5.72	8.06	9.54	11.56	5.33
Merged-chr11-85715252-3	chr11	85715141	85715341	+	729.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	4503.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	12.92	6.79	7.99	8.04	15.96	12.23	13.62	20.1	9.64	8.54	13.06	10.65
Merged-chr3-84390993-1	chr3	84390893	84391093	+	729.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-11072.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	5.25	1.76	5.7	4.02	8.18	9.72	5.98	6.64	4.92	1.0	5.53	5.33
Merged-chr12-110813292-2	chr12	110813194	110813394	+	729.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011973, intron 7 of 11)	intron (NM_011973, intron 7 of 11)	27645.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	6.06	6.54	2.28	5.63	9.82	10.03	11.63	15.14	12.78	1.51	10.05	4.39
Merged-chr12-102391008-2	chr12	102390883	102391083	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161365)	TTS (NM_001161365)	48830.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	1.62	3.77	0.57	0.8	5.73	3.45	1.66	5.78	4.13	13.05	3.01	3.76
Merged-chr7-106558725-2	chr7	106558627	106558827	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	85918.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	14.94	4.53	15.97	11.26	11.05	8.15	11.29	4.26	4.72	7.53	1.0	0.31
Merged-chr9-110713210-1	chr9	110713110	110713310	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR22_Mur|LTR|ERVK	29400.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.81	2.26	6.85	3.22	2.86	4.7	4.65	6.95	4.52	3.51	11.05	4.07
Merged-chr14-46704363-1	chr14	46704263	46704463	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30588.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	1.62	4.53	6.28	6.44	10.64	4.08	1.33	9.03	3.74	3.01	1.51	1.88
Merged-chr18-20717120-2	chr18	20717022	20717222	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 3 of 8)	MER5A|DNA|hAT-Charlie	29282.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	8.08	21.38	13.12	14.48	4.09	3.76	4.65	7.68	6.88	3.51	8.04	8.46
Merged-chr10-42780926-1	chr10	42780826	42781026	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359285, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	19430.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	8.08	2.26	9.13	6.03	4.91	1.88	5.31	6.22	5.9	5.52	6.03	9.08
Merged-chr12-118855313-2	chr12	118855247	118855447	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9018.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	8.48	9.31	5.13	7.64	3.68	6.59	3.99	6.2	1.77	9.04	14.07	5.64
Merged-chr2-68465596-2	chr2	68465484	68465684	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	(CAAAAA)n|Simple_repeat|Simple_repeat	6397.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	2.02	7.29	9.13	4.83	5.73	1.57	6.64	9.08	6.29	4.52	7.54	3.45
Merged-chr17-7870505-1	chr17	7870405	7870605	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55495.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	6.06	0.0	2.28	0.0	1.64	3.45	2.99	2.92	2.56	4.02	0.5	0.63
Merged-chr11-21223063-1	chr11	21222963	21223163	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15969.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.86	3.27	1.14	4.42	7.36	2.51	7.97	7.21	9.83	9.54	3.01	3.76
Merged-chr11-78856494-1	chr11	78856394	78856594	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29899.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	3.63	6.04	6.85	10.46	11.45	14.11	3.99	7.04	13.18	7.03	7.54	6.89
Merged-chr1-178407033-1	chr1	178406933	178407133	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	1015.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	10.09	9.06	9.13	2.01	6.55	5.64	4.98	4.46	9.83	7.53	6.53	6.27
Merged-chr14-17873831-2	chr14	17873731	17873931	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-107813.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.65	8.55	11.98	13.67	4.91	5.33	13.29	12.98	6.49	7.53	18.59	5.33
Merged-chr15-63601707-2	chr15	63601602	63601802	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122094.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.83	6.79	1.14	4.83	5.73	7.84	4.32	8.05	7.08	9.54	10.05	5.64
Merged-chr1-180366573-1	chr1	180366473	180366673	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-36024.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	4.44	4.53	11.98	3.22	11.05	6.9	7.97	6.0	5.51	1.0	3.52	3.45
Merged-chr12-112844045-2	chr12	112843922	112844122	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14501.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	12.92	5.03	6.28	5.23	7.36	6.9	1.33	6.17	10.42	5.52	7.54	6.27
Merged-chr7-44072335-2	chr7	44072236	44072436	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20046.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	5.65	4.53	10.27	14.08	5.73	5.02	3.99	8.97	0.0	0.0	6.53	2.19
Merged-chr9-15046778-2	chr9	15046688	15046888	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1310.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	8.08	7.04	4.56	0.4	3.27	5.33	7.97	11.16	1.77	6.03	5.53	6.27
Merged-chr4-101654778-2	chr4	101654673	101654873	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	6990.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	3.23	5.03	1.14	5.23	6.14	8.47	5.65	11.55	11.8	9.04	9.55	9.08
Merged-chr5-90964916-3	chr5	90964808	90965008	+	729.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026788, intron 5 of 7)	intron (NM_026788, intron 5 of 7)	33712.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	5.65	7.04	15.97	10.05	15.14	12.54	7.64	14.24	8.26	10.54	15.07	6.27
Merged-chr9-107548278-3	chr9	107548176	107548376	+	729.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053253, intron 2 of 11)	intron (NM_053253, intron 2 of 11)	966.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	8.08	7.29	3.42	16.89	2.86	4.7	3.65	5.75	36.78	27.11	37.18	24.43
Merged-chr2-4389524-3	chr2	4389420	4389620	+	729.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-11456.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.44	6.54	13.69	13.67	8.18	7.84	8.64	6.36	14.75	8.03	19.09	10.65
Merged-chr9-96167371-2	chr9	96167271	96167471	+	729.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177352, intron 11 of 16)	intron (NM_177352, intron 11 of 16)	-28904.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	4.04	5.53	9.13	6.44	2.45	5.96	4.32	6.56	12.39	17.07	14.07	9.4
Merged-chr4-129406651-2	chr4	129406543	129406743	+	729.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23924.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	4.85	10.06	2.28	5.23	10.23	8.78	10.63	9.98	10.82	5.52	8.54	7.83
Merged-chr17-69475541-3	chr17	69475433	69475633	+	729.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145192, intron 1 of 1)	intron (NM_001145192, intron 1 of 1)	36207.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	2.83	7.55	7.42	12.87	8.59	11.92	7.31	9.59	14.16	14.06	8.54	3.13
Merged-chr12-32786210-3	chr12	32786102	32786302	+	729.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-34133.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	10.9	15.34	10.84	7.24	6.55	5.96	5.31	5.55	34.42	14.56	22.11	8.14
Merged-chr4-136163690-3	chr4	136163599	136163799	+	729.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8575.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	9.69	5.53	10.27	6.84	9.41	10.66	1.0	5.3	17.31	20.08	13.57	10.02
Merged-chr16-85114891-2	chr16	85114783	85114983	+	729.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	58824.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.63	4.78	11.98	8.85	9.41	9.41	10.63	20.83	8.65	6.53	5.53	7.83
Merged-chr11-20220548-2	chr11	20220457	20220657	+	729.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008996, intron 3 of 5)	intron (NM_008996, intron 3 of 5)	19145.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	12.11	8.3	21.68	11.66	10.23	2.82	5.65	7.35	31.67	9.54	9.55	9.4
Merged-chr5-143061189-2	chr5	143061080	143061280	+	729.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	51840.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	8.08	4.78	8.56	11.26	12.68	7.84	4.32	9.9	5.31	7.03	8.54	1.57
Merged-chr8-79443627-2	chr8	79443536	79443736	+	729.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44168.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.06	7.29	6.28	6.03	12.27	9.72	9.97	12.73	8.65	3.51	11.56	9.71
Merged-chr2-27349132-1	chr2	27349032	27349232	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	78476.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	1.62	2.01	7.99	2.82	8.18	6.9	5.65	5.78	2.95	2.01	4.52	2.19
Merged-chr19-36816151-1	chr19	36816051	36816251	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18081.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	10.9	8.05	6.85	10.86	5.73	10.03	7.97	9.25	5.9	10.04	4.52	1.88
Merged-chr18-34080218-3	chr18	34080110	34080310	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73004.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	7.27	8.05	6.28	9.25	9.82	8.15	6.64	11.5	15.14	17.57	9.55	8.14
Merged-chr11-54770053-1	chr11	54769953	54770153	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	Lx8|LINE|L1	17650.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.04	1.26	4.56	3.22	9.82	9.09	1.33	6.42	4.92	11.05	8.04	0.94
Merged-chr4-55534090-1	chr4	55533990	55534190	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1615.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.65	4.02	2.85	1.61	10.23	6.59	1.66	5.58	4.92	6.53	8.54	7.83
Merged-chr14-30596005-3	chr14	30595941	30596141	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	14269.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.63	4.78	5.7	0.8	9.41	5.33	3.65	2.21	8.06	10.04	9.04	4.39
Merged-chr2-27768599-3	chr2	27768529	27768729	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	58046.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	10.5	7.04	4.56	6.84	10.64	15.05	7.64	3.67	9.05	13.56	5.53	2.82
Merged-chr12-56405056-3	chr12	56404945	56405145	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59151.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	7.67	6.79	15.97	5.63	12.68	5.96	4.32	8.66	12.19	8.03	15.07	10.65
Merged-chr14-16250818-3	chr14	16250741	16250941	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362432, intron 1 of 11)	intron (NM_001362432, intron 1 of 11)	-1033.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.44	5.28	15.97	10.46	11.45	10.66	3.32	10.71	16.13	11.55	10.55	6.58
Merged-chr4-8926797-3	chr4	8926699	8926899	+	729.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175475.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.88	8.3	9.13	5.63	6.55	14.74	5.98	12.67	15.14	9.54	19.09	8.14
Merged-chr9-43107024-5	chr9	43106934	43107134	+	729.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	2.42	10.31	9.7	6.03	3.27	9.41	2.66	8.86	7.87	9.54	3.01	3.76
Merged-chr5-31290049-3	chr5	31289969	31290169	+	729.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026298, intron 1 of 47)	C-rich|Low_complexity|Low_complexity	1045.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	10.9	5.79	8.56	6.84	15.55	5.64	1.99	7.09	15.93	12.05	13.57	9.08
Merged-chrX-140547871-3	chrX	140547759	140547959	+	729.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010286, intron 1 of 3)	intron (NM_010286, intron 1 of 3)	712.0	NM_010286	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	14.94	4.53	9.13	10.46	12.27	10.98	6.31	10.32	10.82	4.52	12.06	9.71
Merged-chrX-13731034-2	chrX	13730930	13731130	+	729.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 1 of 4)	Lx3C|LINE|L1	11177.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	9.69	3.27	2.85	13.67	6.95	2.51	12.95	11.86	6.49	5.52	9.55	4.7
Merged-chr14-72708861-2	chr14	72708756	72708956	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	1147.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	2.02	5.79	2.28	8.04	13.09	10.35	11.29	8.5	12.59	5.02	9.04	3.13
Merged-chr5-117313611-2	chr5	117313509	117313709	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5657.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	16.96	5.28	6.28	2.41	7.36	7.21	4.98	10.21	10.23	14.56	10.55	5.33
Merged-chr17-56884504-2	chr17	56884396	56884596	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030141, intron 10 of 13)	PB1D7|SINE|Alu	8863.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	2.83	5.28	4.56	5.23	3.27	8.47	7.64	9.56	8.06	9.04	10.05	15.04
Merged-chr10-110932009-2	chr10	110931898	110932098	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007792, exon 2 of 6)	exon (NM_007792, exon 2 of 6)	11822.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	4.44	3.02	4.56	2.82	11.45	5.96	9.3	14.07	8.65	7.53	13.57	4.07
Merged-chr16-81330752-2	chr16	81330638	81330838	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	130041.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.23	2.52	4.56	8.85	9.0	6.27	1.66	9.0	10.82	8.54	12.06	4.07
Merged-chr9-95561100-2	chr9	95560997	95561197	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198414, exon 1 of 1)	3' UTR (NM_198414, exon 1 of 1)	1280.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.85	5.53	10.27	9.25	8.59	12.23	8.97	6.76	10.23	7.53	16.58	7.52
Merged-chr3-88624220-2	chr3	88624091	88624291	+	729.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2797.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	7.67	2.77	10.27	2.01	10.23	9.41	5.31	7.4	4.13	2.51	5.53	4.07
Merged-chr12-57546911-1	chr12	57546811	57547011	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008259)	promoter-TSS (NM_008259)	-800.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	3.63	3.02	0.0	1.21	7.77	7.53	2.99	6.42	3.54	3.01	1.0	2.51
Merged-chr14-32482290-3	chr14	32482191	32482391	+	729.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16382.0	NM_009891	12647.0	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik|CHOACTase	choline acetyltransferase	protein-coding	10.5	7.8	9.13	7.24	6.95	9.72	6.98	12.81	19.28	13.05	12.56	10.65
Merged-chr8-122830579-3	chr8	122830474	122830674	+	729.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17800.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	12.11	7.8	13.69	8.85	6.55	7.21	1.0	9.56	12.0	19.08	13.06	18.48
Merged-chr11-20248446-3	chr11	20248385	20248585	+	729.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	939.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	6.06	9.81	9.13	5.63	10.64	8.15	10.63	6.79	9.05	10.54	10.05	5.95
Merged-chr7-90023649-2	chr7	90023543	90023743	+	729.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5516.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.08	4.02	11.98	7.24	14.73	14.42	7.64	11.3	16.13	10.04	14.07	14.1
Merged-chr11-61749408-2	chr11	61749306	61749506	+	729.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	12682.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.65	3.77	5.7	8.04	9.82	10.66	7.64	14.16	12.19	7.03	11.05	8.77
Merged-chr1-74239460-2	chr1	74239375	74239575	+	729.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	2958.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	8.08	11.07	13.69	12.07	5.32	5.02	6.64	8.1	7.67	4.52	8.04	2.51
Merged-chr10-43575167-2	chr10	43575085	43575285	+	729.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3984.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	5.65	9.56	13.69	6.44	8.59	9.09	7.31	9.95	4.52	3.51	9.04	3.45
Merged-chr2-4461040-3	chr2	4460951	4461151	+	729.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	RSINE1|SINE|B4	60075.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	9.69	8.05	14.83	11.66	0.41	6.59	4.65	4.49	37.96	22.09	35.68	21.62
Merged-chr13-64151744-3	chr13	64151640	64151840	+	729.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	633.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	10.09	5.53	4.56	11.26	12.27	6.59	6.64	13.85	11.01	9.04	12.56	13.16
Merged-chr3-107155776-2	chr3	107155696	107155896	+	729.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27347.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	8.88	3.52	11.98	2.82	9.82	20.07	9.97	7.29	0.79	0.0	1.51	1.25
Merged-chr11-23753352-2	chr11	23753242	23753442	+	729.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	17628.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.63	9.06	10.84	4.83	11.45	5.02	5.65	8.02	4.72	10.54	4.02	3.76
Merged-chr4-45940236-3	chr4	45940131	45940331	+	729.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198660, intron 30 of 37)	ORR1A3|LTR|ERVL-MaLR	-25104.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	10.9	7.04	10.84	5.63	7.77	17.87	7.31	6.95	11.8	14.06	21.1	4.39
Merged-chr6-113469666-3	chr6	113469571	113469771	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001034029, exon 14 of 14)	exon (NM_001034029, exon 14 of 14)	-1784.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	10.09	8.3	7.99	11.66	17.59	10.98	12.62	11.19	8.46	10.54	9.55	7.52
Merged-chr5-3497841-3	chr5	3497737	3497937	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-45996.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.86	9.81	9.7	5.23	13.91	25.09	7.64	20.64	9.05	9.04	8.54	5.95
Merged-chr7-28214329-3	chr7	28214242	28214442	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34026.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	13.73	7.55	6.28	8.45	11.45	3.14	3.32	10.37	10.62	12.05	24.12	8.46
Merged-chr4-126030913-3	chr4	126030820	126031020	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252651, intron 4 of 14)	intron (NM_001252651, intron 4 of 14)	6261.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	11.31	11.82	13.69	10.86	15.55	8.15	2.99	6.11	10.62	1.51	14.57	10.02
Merged-chr1-191169764-1	chr1	191169664	191169864	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007498)	TTS (NM_007498)	-4947.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	8.88	8.8	0.57	0.0	1.64	5.02	0.0	0.95	1.38	8.03	0.0	1.25
Merged-chr2-165876441-1	chr2	165876341	165876541	+	729.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	1996.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	2.01	0.0	0.8	0.0	0.0	0.33	0.0	11.21	9.54	18.09	7.21
Merged-chr2-164418703-1	chr2	164418603	164418803	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-13543.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	3.23	3.77	0.0	0.4	0.0	2.51	0.0	0.31	0.79	1.51	0.0	0.63
Merged-chr11-110563485-2	chr11	110563376	110563576	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84136.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.88	7.8	2.28	6.84	4.5	0.94	6.31	10.23	9.44	3.51	6.53	4.07
Merged-chr18-24559422-1	chr18	24559322	24559522	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29218.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	6.06	3.52	1.14	0.8	3.27	5.96	0.0	5.75	3.93	4.52	4.02	2.82
Merged-chr3-100974100-1	chr3	100974000	100974200	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4437.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	7.27	5.03	5.7	7.24	9.0	6.9	1.99	8.38	11.01	6.53	5.53	2.82
Merged-chr12-3695951-1	chr12	3695851	3696051	+	729.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-111029.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	1.62	3.77	3.99	1.61	11.86	4.39	1.66	3.59	13.77	6.03	12.56	8.77
Merged-chr3-149102349-1	chr3	149102249	149102449	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147714.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.02	2.52	2.85	4.02	0.82	2.51	6.31	6.84	0.59	2.51	0.0	3.76
Merged-chr8-107324319-1	chr8	107324219	107324419	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018823, intron 2 of 14)	intron (NM_018823, intron 2 of 14)	30849.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	8.88	4.02	1.71	2.82	5.32	6.9	1.66	9.22	9.05	6.53	6.03	4.7
Merged-chr6-124947466-1	chr6	124947366	124947566	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	16078.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.81	3.02	2.28	2.01	2.45	1.88	6.98	4.4	0.79	2.51	2.01	0.0
Merged-chr17-32165041-2	chr17	32164922	32165122	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008716, intron 1 of 32)	(A)n|Simple_repeat|Simple_repeat	1830.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	2.02	4.53	12.55	5.63	3.27	1.88	4.65	5.89	7.67	4.52	3.01	10.02
Merged-chr11-71859780-1	chr11	71859680	71859880	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	80342.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	5.65	6.04	11.41	13.27	0.41	0.0	3.32	0.84	0.0	0.0	1.0	0.31
Merged-chr4-139197152-1	chr4	139197052	139197252	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3041.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.65	3.02	3.99	3.22	4.91	0.94	8.3	6.31	3.15	3.01	5.53	3.76
Merged-chr17-28308927-2	chr17	28308816	28309016	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4614.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	4.85	4.78	4.56	4.83	6.95	10.66	4.65	6.81	9.83	9.04	10.05	5.01
Merged-chr3-90585744-1	chr3	90585644	90585844	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355597, intron 1 of 2)	intron (NM_001355597, intron 1 of 2)	1085.0	NM_001355597	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	3.63	9.06	13.69	9.25	2.45	4.08	1.66	4.32	1.97	5.52	8.54	5.64
Merged-chr11-54458362-1	chr11	54458262	54458462	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	20183.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	1.62	4.53	4.56	4.42	6.55	8.78	0.0	8.33	10.62	2.51	13.06	2.51
Merged-chr2-158284691-1	chr2	158284591	158284791	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177850)	TTS (NM_177850)	-21802.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	5.25	2.52	2.28	2.41	2.45	8.15	5.65	1.54	6.49	5.52	8.04	1.88
Merged-chr9-47471907-1	chr9	47471807	47472007	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58263.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.25	3.27	6.28	6.84	0.41	2.82	5.98	6.03	2.75	5.52	3.01	2.19
Merged-chr5-136428035-1	chr5	136427935	136428135	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-52232.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	3.23	2.26	2.85	8.85	3.27	3.14	2.66	4.57	5.31	2.51	2.51	3.13
Merged-chr4-118099841-1	chr4	118099741	118099941	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	ORR1B1|LTR|ERVL-MaLR	35105.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	2.83	1.01	1.14	1.61	8.18	10.66	6.31	2.58	4.92	4.52	5.02	2.82
Merged-chr14-65102603-1	chr14	65102503	65102703	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4497.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.06	5.03	15.4	11.66	10.64	5.64	3.32	7.57	9.64	15.57	8.04	3.45
Merged-chr10-94597197-1	chr10	94597097	94597297	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10998.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	3.23	0.75	0.0	0.0	0.82	6.27	1.99	2.07	1.18	3.51	0.5	3.13
Merged-chr9-97068939-1	chr9	97068839	97069039	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42102.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	2.02	1.01	0.57	3.22	6.95	2.82	1.99	3.9	4.52	6.53	5.53	2.51
Merged-chr16-33927752-1	chr16	33927652	33927852	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	39286.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	1.21	3.27	3.42	4.42	6.55	3.76	1.66	5.16	3.34	7.53	3.52	1.88
Merged-chr16-30365693-2	chr16	30365601	30365801	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128096, intron 3 of 33)	(TG)n|Simple_repeat|Simple_repeat	22829.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.06	4.53	4.56	8.04	7.77	8.15	2.99	9.87	7.87	0.0	4.02	7.52
Merged-chr3-59309880-1	chr3	59309780	59309980	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 42 of 43)	MLT1C|LTR|ERVL-MaLR	34376.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	3.63	4.02	5.7	2.41	4.09	3.76	5.98	5.89	1.18	2.51	6.03	1.25
Merged-chr13-36529055-1	chr13	36528955	36529155	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	205422.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	4.85	0.5	7.99	5.63	3.27	7.21	0.0	7.01	6.1	6.53	4.52	4.7
Merged-chr7-19175831-2	chr7	19175740	19175940	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347582)	promoter-TSS (NM_001347582)	-581.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	7.27	6.04	4.56	4.02	9.41	9.09	6.98	4.4	11.21	10.04	11.56	6.89
Merged-chr2-173083829-1	chr2	173083729	173083929	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35696.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	3.63	2.26	1.14	1.61	7.36	5.96	6.31	7.35	5.11	0.0	7.03	3.45
Merged-chr11-5011671-1	chr11	5011571	5011771	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	24847.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	2.02	2.01	2.28	2.82	7.77	1.25	3.65	7.96	3.54	4.02	2.51	4.39
Merged-chr5-115515556-2	chr5	115515450	115515650	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8874.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	10.9	11.82	7.42	4.83	2.86	3.14	3.32	1.79	12.59	6.53	8.04	4.39
Merged-chr6-34864366-2	chr6	34864219	34864419	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	1173.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	2.02	7.55	2.28	3.62	2.86	7.84	2.99	2.69	3.74	2.51	3.01	6.89
Merged-chr4-53112469-1	chr4	53112369	53112569	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47426.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.42	1.26	1.14	4.42	4.09	2.51	6.31	5.19	4.13	6.53	1.51	1.57
Merged-chr2-18899484-1	chr2	18899384	18899584	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-97666.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	2.42	1.26	0.0	7.24	4.91	4.39	2.66	5.94	5.31	3.01	3.52	4.39
Merged-chr12-40248974-1	chr12	40248874	40249074	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25610.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	1.62	5.28	3.99	3.62	6.95	6.59	10.3	5.64	7.87	2.51	4.02	6.89
Merged-chr12-51844693-1	chr12	51844593	51844793	+	729.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15157.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	7.27	7.29	5.7	9.65	10.23	7.53	6.31	12.06	12.0	8.03	13.06	5.95
Merged-chr13-23467074-1	chr13	23466974	23467174	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1173.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	5.65	4.78	14.83	10.05	6.55	8.47	1.0	5.86	10.82	5.02	5.53	4.39
Merged-chr1-189867667-1	chr1	189867567	189867767	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54624.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	4.04	2.01	0.0	0.0	9.82	1.57	1.99	6.25	1.18	0.0	2.51	2.82
Merged-chr19-11372479-1	chr19	11372379	11372579	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3009.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	6.46	5.03	9.13	10.46	10.64	0.31	4.65	6.42	5.7	4.52	3.01	3.76
Merged-chr8-115709589-3	chr8	115709477	115709677	+	728.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2683.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	10.5	7.29	5.7	10.46	14.73	8.47	4.98	12.0	11.41	17.57	16.58	7.83
Merged-chr18-11862940-3	chr18	11862858	11863058	+	728.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-22520.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	8.48	3.52	15.4	11.66	9.82	8.78	8.97	23.69	12.0	6.53	12.06	7.21
Merged-chr7-19589475-3	chr7	19589369	19589569	+	728.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125836, intron 6 of 17)	B3|SINE|B2	12182.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	12.92	11.32	4.56	5.63	11.45	8.47	3.32	5.36	11.41	12.05	11.05	10.96
Merged-chr4-134490188-2	chr4	134490101	134490301	+	728.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-6560.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	9.69	5.53	11.41	6.84	7.77	9.09	14.62	9.08	5.11	3.51	6.03	5.95
Merged-chr6-124297500-3	chr6	124297406	124297606	+	728.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_A|LTR|ERVK	-7145.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	7.67	6.04	10.27	15.28	4.09	17.56	18.27	2.86	7.08	16.07	11.05	9.71
Merged-chr13-34078906-2	chr13	34078799	34078999	+	728.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-891.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	15.75	5.79	2.85	0.8	7.36	11.92	4.32	8.41	9.05	11.55	10.55	4.39
Merged-chr3-103140274-2	chr3	103140174	103140374	+	728.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356383)	promoter-TSS (NM_001356383)	-52.0	NM_001356383	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	8.48	10.56	14.83	2.41	8.59	13.8	6.64	12.22	5.9	6.53	10.05	4.39
Merged-chr15-82807591-2	chr15	82807492	82807692	+	728.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13347.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	7.27	2.77	12.55	6.84	8.59	8.78	6.64	11.02	9.83	9.54	10.05	6.89
Merged-chr7-30613772-2	chr7	30613680	30613880	+	728.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1046.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	6.06	6.04	2.28	9.25	16.36	9.72	4.32	7.04	6.1	14.06	7.03	4.7
Merged-chr3-88335878-2	chr3	88335803	88336003	+	728.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	-357.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	10.09	9.56	9.7	8.85	10.64	18.5	5.65	6.39	6.88	9.54	9.55	6.58
Merged-chr10-95415977-3	chr10	95415875	95416075	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168657)	promoter-TSS (NM_001168657)	237.0	NM_001168655	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	4.04	3.02	4.56	4.42	8.59	8.15	3.99	4.93	8.46	4.02	9.55	5.33
Merged-chr5-110447422-3	chr5	110447347	110447547	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1056.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.86	5.03	5.7	8.85	8.18	2.82	1.66	9.42	9.05	3.51	9.04	10.34
Merged-chr11-117199752-3	chr11	117199658	117199858	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	97.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.86	8.05	7.99	4.02	9.0	10.66	6.98	6.84	12.98	14.56	7.03	10.65
Merged-chr10-120136297-3	chr10	120136224	120136424	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23359.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	11.31	5.53	11.41	1.21	18.82	8.47	9.3	14.55	6.1	8.03	10.55	7.83
Merged-chrX-60384284-3	chrX	60384198	60384398	+	728.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	10194.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	11.31	10.82	1.14	9.65	8.18	10.03	6.98	17.5	12.78	10.04	12.56	4.7
Merged-chr18-82479850-2	chr18	82479747	82479947	+	728.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	4724.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	9.29	5.53	3.99	5.23	9.0	9.41	5.65	7.51	11.8	6.53	9.04	7.52
Merged-chr7-19253851-3	chr7	19253713	19253913	+	728.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18041.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	4.04	8.3	10.84	3.22	8.18	9.72	6.98	8.36	9.64	6.53	9.04	10.02
Merged-chr12-102340561-3	chr12	102340453	102340653	+	728.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	56912.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	10.09	9.06	13.69	8.85	10.23	10.66	8.3	14.94	5.7	6.03	8.54	9.08
Merged-chr6-39726328-2	chr6	39726224	39726424	+	728.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-861.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	15.75	12.32	10.84	3.62	6.55	15.05	2.66	5.92	18.1	10.54	12.56	6.58
Merged-chr15-86250499-1	chr15	86250399	86250599	+	728.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-27176.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.65	4.02	4.56	5.23	6.95	8.15	7.31	7.15	5.7	5.02	4.52	2.82
Merged-chr13-96433871-2	chr13	96433808	96434008	+	728.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042714, intron 8 of 13)	intron (NM_001042714, intron 8 of 13)	37252.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	2.02	7.04	7.99	4.42	10.64	11.6	6.31	8.21	5.11	6.03	2.51	2.82
Merged-chr16-19963210-2	chr16	19963098	19963298	+	728.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	19851.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	2.02	2.77	6.85	7.24	9.82	6.9	7.31	19.09	8.06	6.03	12.06	12.53
Merged-chr19-57393584-3	chr19	57393478	57393678	+	728.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	32569.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.81	6.04	13.69	9.65	11.86	7.53	13.95	16.51	8.85	2.01	11.56	9.08
Merged-chr11-74501032-3	chr11	74500941	74501141	+	728.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	89117.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.85	7.04	11.41	6.44	6.55	7.84	5.65	6.76	8.65	3.51	18.59	5.33
Merged-chr6-29825478-3	chr6	29825368	29825568	+	728.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-28273.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	10.5	8.05	7.42	13.27	20.05	18.19	9.97	15.31	8.85	12.05	17.08	10.65
Merged-chr4-56070225-3	chr4	56070130	56070330	+	728.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-537755.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.08	11.07	20.54	31.37	8.59	5.64	8.3	13.51	6.29	8.54	11.56	10.02
Merged-chr1-164248140-3	chr1	164248041	164248241	+	728.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-905.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	8.08	8.3	9.13	5.63	6.95	9.41	11.63	7.85	11.01	8.03	17.08	4.39
Merged-chr2-68368048-1	chr2	68367948	68368148	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 7 of 17)	intron (NM_016866, intron 7 of 17)	103933.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	7.67	3.77	0.0	4.02	11.86	3.76	7.97	6.87	6.88	1.51	5.02	2.51
Merged-chr3-109123857-1	chr3	109123757	109123957	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	708.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	4.04	4.28	4.56	2.41	1.23	9.09	9.97	6.17	5.11	2.01	5.53	3.76
Merged-chr4-47247049-1	chr4	47246949	47247149	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009928, intron 3 of 39)	intron (NM_009928, intron 3 of 39)	39037.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	7.67	5.28	9.7	4.83	6.14	6.9	7.97	7.71	6.88	12.05	3.52	3.76
Merged-chr6-115268066-1	chr6	115267966	115268166	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111015, intron 10 of 12)	intron (NM_001111015, intron 10 of 12)	-15861.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	8.48	6.04	3.42	5.23	9.0	8.47	1.66	6.06	7.67	4.52	7.03	4.39
Merged-chr7-121158577-1	chr7	121158477	121158677	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75139.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	3.23	3.02	1.14	5.63	9.41	6.59	9.3	8.13	4.52	6.53	6.03	9.08
Merged-chr15-10872604-3	chr15	10872476	10872676	+	728.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43525.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	3.63	9.81	1.71	11.66	4.09	6.59	11.29	3.08	8.85	14.06	9.04	4.7
Merged-chr3-149220905-2	chr3	149220799	149220999	+	728.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53838.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	11.31	9.56	10.27	6.44	13.91	8.15	2.66	6.64	9.05	4.52	6.53	3.13
Merged-chr3-153636653-2	chr3	153636555	153636755	+	728.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	88478.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	4.85	3.27	3.99	7.24	7.77	10.03	5.65	11.75	8.46	11.05	16.58	16.92
Merged-chrX-159963443-2	chrX	159963345	159963545	+	728.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 10 of 12)	intron (NM_001135728, intron 10 of 12)	20752.0	NM_001290664	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	8.88	5.03	4.56	9.25	13.91	7.53	5.98	13.09	22.62	11.05	12.56	5.01
Merged-chr5-92270686-3	chr5	92270600	92270800	+	728.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025972, intron 3 of 10)	intron (NM_025972, intron 3 of 10)	7481.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	9.29	9.56	4.56	7.24	7.36	6.59	7.31	8.36	5.9	14.56	11.56	4.7
Merged-chr1-191184997-2	chr1	191184861	191185061	+	728.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1628.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	8.48	4.78	6.28	17.29	5.73	13.48	5.31	6.03	11.41	10.04	5.53	5.33
Merged-chr6-134047598-3	chr6	134047504	134047704	+	728.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	11904.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	9.29	10.06	15.4	6.84	8.59	9.41	2.99	6.59	17.7	10.04	11.56	17.23
Merged-chr6-137756525-3	chr6	137756420	137756620	+	728.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172733, intron 1 of 8)	B3|SINE|B2	1943.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	1.21	10.31	3.99	7.64	13.91	8.78	7.64	9.95	15.54	11.55	14.57	17.23
Merged-chr14-70769736-2	chr14	70769638	70769838	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3110.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	3.23	5.53	6.85	12.07	9.0	7.53	10.3	7.07	10.23	30.13	15.58	5.01
Merged-chr11-97050811-3	chr11	97050705	97050905	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081434)	promoter-TSS (NM_001081434)	-15.0	NM_001310509	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	5.25	6.29	2.28	10.05	10.64	6.59	5.98	10.32	13.18	5.02	9.55	9.08
Merged-chr12-54407690-1	chr12	54407590	54407790	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16372.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.81	2.26	1.14	0.4	6.55	7.84	1.66	4.63	7.47	2.51	1.51	2.82
Merged-chr1-106882923-2	chr1	106882838	106883038	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001360853, exon 8 of 8)	3' UTR (NM_001360853, exon 8 of 8)	21763.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	12.52	4.78	7.42	6.03	8.18	5.64	5.65	16.01	8.06	7.03	17.08	5.64
Merged-chr9-95858500-3	chr9	95858398	95858598	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073361)	promoter-TSS (NR_073361)	-616.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	10.09	9.56	8.56	6.84	8.59	8.78	8.64	6.79	15.74	21.09	9.55	7.52
Merged-chr6-57859823-3	chr6	57859715	57859915	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15358.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	10.09	5.53	13.69	7.24	11.45	5.64	13.95	9.67	6.29	3.01	13.57	8.14
Merged-chr14-102616158-2	chr14	102616057	102616257	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	366475.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	2.02	7.04	5.13	1.61	2.86	7.21	8.3	9.95	4.13	7.03	13.06	3.13
Merged-chr19-60805057-1	chr19	60804957	60805157	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6498.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	0.81	4.02	3.99	6.03	4.09	8.47	4.98	7.49	3.74	3.01	10.05	3.76
Merged-chr1-64753861-2	chr1	64753744	64753944	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16094.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	2.02	3.77	6.85	10.46	10.23	5.33	4.32	14.55	10.82	8.03	18.09	8.46
Merged-chr1-152152613-2	chr1	152152501	152152701	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62281.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	8.88	2.52	17.68	7.64	10.23	5.33	6.64	26.19	11.41	5.02	9.04	4.7
Merged-chr13-73774195-1	chr13	73774095	73774295	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	10498.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	2.83	4.02	4.56	2.41	9.0	2.51	4.98	8.41	6.29	1.51	6.03	5.01
Merged-chr3-96263964-2	chr3	96263901	96264101	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	-684.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	1.21	5.28	6.85	4.42	2.86	3.45	2.33	2.27	4.92	7.03	6.03	7.52
Merged-chr10-94943789-3	chr10	94943670	94943870	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	808.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.85	6.79	7.99	10.86	8.18	2.51	4.32	8.61	10.62	4.52	12.06	3.76
Merged-chr9-116173905-3	chr9	116173773	116173973	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	1490.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.06	4.78	9.13	6.84	9.41	7.84	13.95	8.24	10.42	7.03	5.53	8.46
Merged-chr3-104822626-2	chr3	104822526	104822726	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355044)	TTS (NM_001355044)	-4063.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	4.44	0.0	0.0	0.8	4.91	8.15	4.98	12.31	11.6	11.55	7.54	9.4
Merged-chr11-5629298-2	chr11	5629197	5629397	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023816, exon 16 of 27)	exon (NM_023816, exon 16 of 27)	59613.0	NM_023816	76389.0	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	6.06	7.29	0.57	4.02	3.68	7.84	2.33	6.48	12.19	8.03	11.05	5.95
Merged-chr1-163930639-2	chr1	163930559	163930759	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286003, intron 1 of 13)	intron (NM_001286003, intron 1 of 13)	894.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	8.48	7.55	7.42	10.46	6.95	8.47	8.64	7.57	13.57	10.54	12.56	11.59
Merged-chr1-192137184-2	chr1	192137114	192137314	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033536, intron 1 of 3)	CpG	316.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	6.06	9.06	4.56	6.03	5.32	6.27	9.3	7.35	5.51	12.55	4.02	10.34
Merged-chr9-32032942-2	chr9	32032885	32033085	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-83151.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.44	2.26	6.28	6.44	9.0	3.45	2.99	7.46	7.67	7.53	4.52	8.77
Merged-chr15-79893008-1	chr15	79892908	79893108	+	728.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030675, exon 1 of 1)	non-coding (NR_030675, exon 1 of 1)	130.0	NR_030675	109361.0	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	0.0	1.26	1.71	1.61	2.86	0.0	0.66	1.12	4.33	3.01	1.51	4.07
Merged-chr13-46810260-1	chr13	46810160	46810360	+	728.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 14 of 37)	ORR1E|LTR|ERVL-MaLR	-82411.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	4.44	4.28	3.42	2.01	4.5	4.39	1.33	2.58	17.9	10.54	13.06	8.77
Merged-chr15-98417395-2	chr15	98417286	98417486	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	18941.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	5.25	4.02	2.28	4.83	6.55	14.74	6.98	7.12	9.64	12.05	9.55	12.84
Merged-chr7-75655420-2	chr7	75655289	75655489	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-192949.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.83	4.28	14.83	4.02	2.45	3.76	5.65	4.37	7.87	2.51	7.03	3.45
Merged-chr6-88435839-2	chr6	88435741	88435941	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	10698.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	8.08	11.82	6.85	10.46	4.91	6.9	7.31	6.03	5.7	7.03	9.55	3.76
Merged-chr3-89227427-3	chr3	89227224	89227424	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030579)	promoter-TSS (NR_030579)	-126.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	5.65	2.77	3.42	3.22	2.45	1.25	1.66	5.1	3.15	0.5	2.01	2.82
Merged-chr11-43613308-3	chr11	43613211	43613411	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11749.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	7.67	6.79	9.7	7.64	12.68	10.35	4.65	8.27	10.62	6.03	5.02	11.59
Merged-chr10-115383783-3	chr10	115383658	115383858	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025780, intron 1 of 2)	intron (NM_025780, intron 1 of 2)	677.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	7.27	7.55	13.69	4.83	7.77	15.68	8.3	15.22	9.64	3.51	10.55	6.27
Merged-chr16-36982579-3	chr16	36982480	36982680	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	-3444.0	NM_001037321	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	15.34	10.56	7.99	7.24	14.32	9.72	8.64	7.74	9.24	6.53	11.56	6.89
Merged-chr2-103849038-2	chr2	103848936	103849136	+	728.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38414.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	2.83	11.57	7.42	4.83	4.5	9.09	2.66	5.47	11.41	3.51	11.56	5.64
Merged-chr3-32698445-2	chr3	32698336	32698536	+	728.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10110.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	12.92	6.54	7.99	4.83	4.09	13.48	5.98	9.98	9.24	4.52	15.58	7.52
Merged-chr1-151953763-3	chr1	151953649	151953849	+	728.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	136571.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	12.11	8.55	13.12	12.47	9.0	7.21	6.98	13.65	5.11	5.52	12.06	9.4
Merged-chr16-10984839-2	chr16	10984745	10984945	+	728.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	8276.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.23	2.52	6.28	11.26	9.82	7.53	6.64	14.5	11.8	4.52	6.03	6.89
Merged-chr2-25496616-2	chr2	25496509	25496709	+	728.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2698.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	7.67	4.28	7.99	6.03	9.82	6.59	6.31	7.43	12.0	11.05	11.56	13.16
Merged-chr16-57344991-2	chr16	57344894	57345094	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	MERVL_2A-int|LTR|ERVL	-8283.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.63	3.77	8.56	4.42	4.09	5.64	4.98	7.09	8.65	2.01	14.07	8.14
Merged-chr1-144204924-2	chr1	144204829	144205029	+	728.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27557.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	12.92	7.8	3.42	22.12	10.64	13.17	5.65	22.32	6.49	10.04	10.55	7.52
Merged-chr4-40217987-2	chr4	40217882	40218082	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172689, intron 10 of 17)	B2_Mm1a|SINE|B2	21843.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	1.62	8.05	7.42	3.62	2.45	7.84	8.97	8.61	12.0	9.54	14.57	7.83
Merged-chr14-55392608-2	chr14	55392507	55392707	+	728.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86151.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	9.69	9.31	9.13	5.63	6.14	15.37	7.97	10.12	2.75	1.0	1.51	1.57
Merged-chr4-101670019-2	chr4	101669918	101670118	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22235.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	1.62	0.5	5.13	6.44	10.23	9.41	3.65	7.4	5.7	1.51	12.06	7.83
Merged-chr15-90669678-2	chr15	90669562	90669762	+	728.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	9726.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.65	5.28	1.14	10.46	11.86	11.92	9.63	16.68	8.06	11.05	7.54	3.76
Merged-chr12-25320038-2	chr12	25319943	25320143	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	190869.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.81	5.53	3.42	7.64	5.32	7.53	8.3	14.52	9.83	9.54	11.05	6.89
Merged-chr3-31270087-1	chr3	31269987	31270187	+	728.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172861, intron 1 of 7)	L2|LINE|L2	40232.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.81	1.01	0.0	2.41	6.14	9.41	5.98	7.23	3.93	4.52	6.03	3.45
Merged-chr10-77282981-3	chr10	77282893	77283093	+	728.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23693.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	7.67	5.53	9.7	4.83	5.73	9.41	1.33	10.57	13.57	11.55	9.55	5.95
Merged-chr17-45736876-3	chr17	45736763	45736963	+	728.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	(CG)n|Simple_repeat|Simple_repeat	2357.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	6.46	3.27	7.99	2.82	19.64	5.33	5.98	7.57	14.36	9.54	15.07	4.07
Merged-chr14-69823641-2	chr14	69823530	69823730	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16777.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	7.67	3.27	2.28	4.02	6.95	9.41	9.3	7.37	5.7	3.01	4.52	4.07
Merged-chr2-48844308-2	chr2	48844185	48844385	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	30176.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.04	4.02	7.42	9.25	6.55	4.39	8.97	9.45	9.05	3.01	10.05	3.13
Merged-chr1-87857024-2	chr1	87856926	87857126	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177646, intron 1 of 29)	L1MB7|LINE|L1	-2727.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	5.25	4.02	3.42	12.07	9.82	23.2	9.97	15.31	10.23	7.53	13.57	8.14
Merged-chr14-30564628-2	chr14	30564545	30564745	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009388, intron 4 of 13)	intron (NM_009388, intron 4 of 13)	-7504.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	4.04	1.76	5.7	4.02	4.5	10.35	1.99	6.25	17.51	9.54	13.57	2.19
Merged-chr6-129255162-3	chr6	129255069	129255269	+	728.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16687.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	17.36	7.29	6.85	4.83	9.0	6.59	2.33	7.85	20.46	17.07	9.55	11.9
Merged-chr11-85686408-2	chr11	85686324	85686524	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	ORR1E|LTR|ERVL-MaLR	33320.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	6.46	4.53	3.42	2.82	7.36	17.87	9.3	12.14	7.87	8.54	6.53	4.39
Merged-chr11-110431695-2	chr11	110431584	110431784	+	728.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	MIRb|SINE|MIR	32582.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	12.52	6.29	4.56	7.24	8.59	11.92	2.66	3.87	16.13	14.06	19.6	5.64
Merged-chr10-42299684-1	chr10	42299584	42299784	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-22942.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.81	1.51	0.0	0.8	12.27	7.21	5.31	8.47	3.74	3.01	6.53	11.59
Merged-chr16-4960606-3	chr16	4960505	4960705	+	728.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028301, intron 1 of 16)	intron (NM_028301, intron 1 of 16)	3632.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	7.67	8.05	13.12	22.52	10.23	11.29	13.62	11.72	8.46	8.03	15.58	9.71
Merged-chr9-37246364-3	chr9	37246273	37246473	+	728.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	9365.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	8.48	6.54	6.85	8.45	9.82	11.6	10.3	16.46	12.19	13.05	15.07	8.14
Merged-chr12-116049777-1	chr12	116049677	116049877	+	728.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	2053.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	7.27	4.28	4.56	4.02	3.68	2.2	3.65	2.8	5.31	1.0	6.03	4.7
Merged-chr13-113607021-1	chr13	113606921	113607121	+	728.200012	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11543.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	11.31	10.56	7.42	6.84	6.95	28.22	4.32	2.64	12.19	7.53	4.52	1.57
Merged-chr4-41697632-3	chr4	41697528	41697728	+	728.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016673)	promoter-TSS (NM_016673)	-537.0	NM_016673	12804.0	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	9.69	4.02	11.41	4.02	14.73	7.53	2.66	9.59	19.08	13.05	12.56	11.28
Merged-chr10-69306391-2	chr10	69306276	69306476	+	728.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46536.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	12.11	6.29	6.85	4.02	5.32	6.9	5.65	9.67	13.96	18.08	11.56	12.84
Merged-chr5-17843449-2	chr5	17843352	17843552	+	728.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6340.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	7.27	4.02	10.27	5.63	6.14	10.98	6.98	20.19	8.65	12.05	11.05	7.52
Merged-chr13-21168100-3	chr13	21167990	21168190	+	728.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-11841.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	9.29	9.56	13.12	6.44	14.73	11.92	3.65	4.99	12.78	12.55	7.54	4.07
Merged-chr16-94011453-3	chr16	94011345	94011545	+	728.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2608.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	11.31	7.29	5.7	10.46	8.18	8.15	5.31	13.01	11.01	6.53	4.02	8.14
Merged-chr13-9883216-3	chr13	9883130	9883330	+	728.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117909.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.85	8.3	12.55	9.65	16.77	17.56	11.96	16.65	6.69	11.05	24.62	6.58
Merged-chr6-83677846-3	chr6	83677737	83677937	+	728.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144943)	promoter-TSS (NM_144943)	20.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	10.5	9.06	28.52	9.65	8.59	13.17	12.29	12.53	13.77	10.04	11.05	11.9
Merged-chr12-54862124-3	chr12	54862041	54862241	+	728.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007688, intron 1 of 3)	intron (NM_007688, intron 1 of 3)	736.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	9.29	2.26	11.98	4.02	10.64	15.37	7.97	13.6	11.6	14.06	9.04	4.39
Merged-chr1-138559984-2	chr1	138559890	138560090	+	728.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 2 of 9)	intron (NM_021605, intron 2 of 9)	59767.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	10.9	12.07	13.12	2.01	9.0	10.03	3.99	8.72	14.55	7.53	3.52	3.76
Merged-chr1-152513130-1	chr1	152513030	152513230	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	112087.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	1.62	9.81	2.85	3.22	4.09	8.47	3.65	0.0	1.57	2.01	3.01	0.94
Merged-chr3-65530815-1	chr3	65530715	65530915	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178892, intron 1 of 5)	intron (NM_178892, intron 1 of 5)	-1401.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.04	6.29	3.42	4.42	6.14	2.82	7.31	6.56	7.08	6.53	6.53	1.88
Merged-chr3-69017371-1	chr3	69017271	69017471	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356976, intron 7 of 23)	B4A|SINE|B4	7469.0	NR_029735	723949.0		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	4.85	3.52	6.28	3.22	10.23	2.51	1.33	6.73	3.15	4.02	5.02	2.82
Merged-chr8-122263479-1	chr8	122263379	122263579	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18662.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	6.46	9.81	6.85	0.0	11.05	6.9	6.98	5.97	7.08	10.04	3.52	3.13
Merged-chr1-92749663-2	chr1	92749527	92749727	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82018.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	2.83	7.29	2.28	14.48	10.23	4.08	7.64	12.11	8.06	3.51	7.03	4.39
Merged-chr13-99093519-2	chr13	99093408	99093608	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5587.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	3.63	8.55	2.85	4.42	6.14	10.66	4.98	6.08	14.55	14.06	17.59	7.83
Merged-chr17-78410925-1	chr17	78410825	78411025	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	7227.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	2.83	3.27	6.85	5.63	8.18	1.57	9.97	7.21	8.65	8.03	9.04	4.39
Merged-chr6-88189743-1	chr6	88189643	88189843	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-4148.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	8.88	2.77	13.69	4.02	7.36	13.48	2.33	6.76	4.92	6.53	4.52	5.33
Merged-chr10-81319128-1	chr10	81319028	81319228	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1975.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	1.62	2.52	6.28	0.0	6.14	2.82	0.66	1.51	1.57	0.0	5.02	3.13
Merged-chr8-70594971-1	chr8	70594871	70595071	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023627, exon 3 of 11)	exon (NM_023627, exon 3 of 11)	490.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	14.13	10.06	3.42	7.24	13.5	12.86	7.97	8.58	8.26	10.04	3.01	10.65
Merged-chr15-39217438-1	chr15	39217338	39217538	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256383, intron 1 of 25)	LTR41B|LTR|ERVL	19152.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.04	3.27	5.13	4.42	2.45	5.96	1.33	5.36	3.34	5.02	6.53	3.13
Merged-chr3-54807181-1	chr3	54807081	54807281	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133231, intron 1 of 2)	CpG	610.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	7.67	5.79	14.26	9.25	5.32	9.41	9.3	9.34	15.34	9.54	8.04	5.33
Merged-chr1-135510453-2	chr1	135510346	135510546	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-55763.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	8.48	7.55	27.95	8.45	15.96	7.84	4.65	11.66	7.67	3.01	9.04	5.01
Merged-chr18-24438064-1	chr18	24437964	24438164	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8894.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	4.85	5.53	3.42	2.41	13.91	5.64	4.65	7.6	3.15	4.02	5.02	2.19
Merged-chr6-28807193-2	chr6	28807076	28807276	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	24571.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	5.65	4.78	9.13	10.46	8.18	10.03	11.29	12.84	0.59	3.51	9.04	0.94
Merged-chr2-156200018-2	chr2	156199913	156200113	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	3366.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	2.42	8.8	8.56	10.05	3.68	4.08	2.66	0.28	18.29	12.55	13.57	11.28
Merged-chr6-140424093-1	chr6	140423993	140424193	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144920)	promoter-TSS (NM_144920)	-6.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	1.21	2.26	0.0	1.21	1.23	5.02	5.31	6.87	1.97	1.0	0.0	1.57
Merged-chr17-84149035-1	chr17	84148935	84149135	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38912.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	1.62	3.77	1.71	8.45	6.55	1.57	2.66	7.74	2.95	2.51	2.01	5.64
Merged-chr4-88034554-1	chr4	88034454	88034654	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1147.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.23	6.79	7.42	2.41	15.55	3.45	4.65	5.19	5.7	4.02	9.55	5.01
Merged-chr13-92580448-2	chr13	92580350	92580550	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	12.11	6.54	6.28	2.82	5.32	12.23	2.99	7.82	8.85	7.03	13.06	10.96
Merged-chr12-111920212-1	chr12	111920112	111920312	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12157.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	2.02	3.52	4.56	4.42	4.5	5.02	9.3	7.85	3.93	1.0	7.03	9.08
Merged-chr9-103234230-2	chr9	103234118	103234318	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3932.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	5.25	2.01	9.7	3.62	6.14	7.84	6.31	8.36	6.69	4.52	13.06	4.7
Merged-chr1-55529724-1	chr1	55529624	55529824	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123778.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.02	1.01	2.85	3.62	6.95	7.84	8.3	9.73	3.93	3.51	10.55	1.57
Merged-chr17-46252776-2	chr17	46252678	46252878	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145353)	TTS (NM_145353)	-1387.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	4.04	5.03	3.42	1.21	4.5	10.66	0.66	6.48	7.28	4.52	6.03	8.14
Merged-chr2-116999005-1	chr2	116998905	116999105	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98853.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.85	5.53	9.13	7.64	8.18	21.01	10.3	4.04	7.87	8.03	4.02	2.51
Merged-chr11-86585150-1	chr11	86585050	86585250	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-992.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	5.65	2.52	5.13	4.83	4.09	5.64	3.99	4.99	4.72	7.53	8.04	6.89
Merged-chr8-119798867-1	chr8	119798767	119798967	+	728.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20451.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	3.63	6.79	7.42	2.01	9.0	4.08	3.99	3.48	8.46	6.03	12.06	5.33
Merged-chr8-25078017-1	chr8	25077917	25078117	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	23794.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	4.85	8.3	3.42	4.83	6.55	4.39	6.64	7.65	4.92	5.52	4.52	2.82
Merged-chr18-12158782-1	chr18	12158682	12158882	+	728.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9948.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	3.23	5.03	1.14	2.01	1.64	0.94	0.66	1.54	10.42	6.53	3.52	6.27
Merged-chr1-138517177-1	chr1	138517077	138517277	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 5 of 9)	ID_B1|SINE|B4	102580.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.25	3.27	3.42	3.62	5.73	5.64	7.64	9.76	4.13	4.52	7.54	1.57
Merged-chr7-128058873-2	chr7	128058769	128058969	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3771.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	3.23	5.28	6.85	16.09	4.09	3.14	6.98	6.9	5.9	3.51	4.02	7.83
Merged-chr13-48965137-1	chr13	48965037	48965237	+	728.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	Tigger15a|DNA|TcMar-Tigger	2691.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	4.44	1.51	3.99	2.41	2.45	2.51	4.32	10.85	11.6	6.03	4.52	7.52
Merged-chr5-104955473-3	chr5	104955375	104955575	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	27242.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	12.92	7.04	2.85	8.85	6.14	11.6	9.3	1.68	8.85	11.05	5.02	1.57
Merged-chr7-127763808-1	chr7	127763708	127763908	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172748, intron 9 of 10)	intron (NM_172748, intron 9 of 10)	-6007.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	2.42	3.02	3.42	0.8	3.27	5.96	2.66	8.72	8.26	5.52	12.56	6.89
Merged-chr16-4729218-1	chr16	4729118	4729318	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	RSINE1|SINE|B4	2857.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	1.21	4.02	5.7	7.64	11.86	4.39	4.65	6.45	3.54	4.02	8.04	8.46
Merged-chr8-40497876-1	chr8	40497776	40497976	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	12603.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	2.83	6.29	2.85	6.44	8.59	4.39	7.64	5.1	7.67	4.02	11.05	3.76
Merged-chr6-145123915-3	chr6	145123797	145123997	+	727.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	2158.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	8.48	6.79	6.85	8.45	10.64	6.59	9.3	9.08	8.65	4.52	13.06	6.27
Merged-chr8-3718784-3	chr8	3718681	3718881	+	727.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029465, exon 3 of 9)	exon (NM_029465, exon 3 of 9)	1870.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	8.48	2.77	10.27	11.66	8.59	10.35	8.3	15.08	11.8	9.54	10.05	7.21
Merged-chr5-64933643-3	chr5	64933536	64933736	+	727.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-78.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	8.48	10.56	11.41	9.25	7.77	10.03	8.64	6.5	18.29	11.55	11.05	15.98
Merged-chr4-142019404-2	chr4	142019306	142019506	+	727.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	1508.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	2.02	3.02	10.27	5.63	7.36	7.53	8.3	18.98	14.36	5.02	10.55	5.33
Merged-chr7-98071772-2	chr7	98071649	98071849	+	727.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 30 of 48)	intron (NM_008663, intron 30 of 48)	37499.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	6.86	4.28	5.7	2.41	4.91	7.21	3.99	4.37	11.41	6.03	9.55	8.14
Merged-chr5-140370609-1	chr5	140370509	140370709	+	727.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	18699.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	3.63	3.02	7.42	10.86	8.18	6.9	6.31	10.29	9.24	4.02	5.53	5.64
Merged-chr1-166171428-3	chr1	166171320	166171520	+	727.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41199.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.85	11.07	6.28	5.23	11.45	20.38	6.64	12.14	11.01	8.03	13.57	7.21
Merged-chr7-44891687-3	chr7	44891587	44891787	+	727.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	737.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	10.9	12.83	14.26	6.44	9.41	13.48	3.99	6.62	11.21	13.56	10.55	16.6
Merged-chr2-119277149-1	chr2	119277049	119277249	+	727.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5923.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	6.06	4.78	6.28	3.22	8.18	9.09	4.32	8.44	2.16	0.0	0.0	0.94
Merged-chr11-100730685-2	chr11	100730577	100730777	+	727.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7538.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	7.27	5.53	6.85	5.63	19.64	2.2	4.65	8.21	11.41	3.51	9.04	8.77
Merged-chr13-107762951-3	chr13	107762860	107763060	+	727.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75563.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	9.29	9.31	15.97	12.07	7.77	4.39	3.65	8.02	9.05	5.52	10.55	3.45
Merged-chrX-48275771-3	chrX	48275650	48275850	+	727.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028276, intron 11 of 14)	intron (NM_028276, intron 11 of 14)	9676.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	6.46	5.79	8.56	18.9	19.64	10.03	18.6	21.08	7.67	16.07	10.55	5.33
Merged-chrX-142377525-2	chrX	142377428	142377628	+	727.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	13007.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	3.23	3.02	6.28	7.64	7.77	7.53	7.31	11.47	9.05	13.05	11.56	2.19
Merged-chr3-130065675-2	chr3	130065580	130065780	+	727.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4773.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	7.67	8.55	4.56	12.07	8.18	10.66	11.63	10.96	4.72	12.05	10.05	5.95
Merged-chr19-45014873-3	chr19	45014824	45015024	+	727.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145503)	promoter-TSS (NM_145503)	-252.0	NM_145503	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	5.25	6.29	8.56	2.01	15.14	11.29	3.65	2.3	9.83	11.55	15.07	3.13
Merged-chr4-126108382-1	chr4	126108282	126108482	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	4425.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	8.48	12.07	15.97	9.65	2.86	6.59	3.65	2.92	10.82	6.53	2.01	5.64
Merged-chr1-37029965-3	chr1	37029851	37030051	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90424.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	7.27	6.54	13.69	6.03	8.18	8.47	7.97	11.66	12.98	9.54	14.57	5.33
Merged-chr8-86884259-3	chr8	86884155	86884355	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	1003.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	15.75	7.29	4.56	7.64	11.45	4.39	8.3	4.43	16.92	7.03	15.58	12.22
Merged-chr13-23689087-3	chr13	23688903	23689103	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	4804.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	3.63	1.76	0.0	1.21	5.32	1.88	1.99	0.73	7.28	3.01	8.54	5.33
Merged-chr3-65441795-1	chr3	65441695	65441895	+	727.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	-49242.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.85	5.53	0.57	6.84	2.45	6.9	9.63	7.85	4.13	10.04	1.51	1.25
Merged-chr10-127041342-3	chr10	127041267	127041467	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	27.0	NM_001205036	100504608.0	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	Fam119b|eef1akmt3	methyltransferase like 21B	protein-coding	6.46	10.82	11.98	6.44	9.0	10.03	8.3	9.28	10.03	13.56	8.54	9.08
Merged-chr18-65501558-1	chr18	65501458	65501658	+	727.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	70561.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	2.02	6.54	7.99	4.83	11.86	12.86	9.63	6.45	1.18	0.0	1.0	0.94
Merged-chr3-136235759-2	chr3	136235647	136235847	+	727.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 5 of 16)	intron (NM_001033350, intron 5 of 16)	90319.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	2.42	3.02	6.85	2.82	7.77	4.39	10.3	11.38	5.7	10.04	11.05	2.82
Merged-chr19-46484742-2	chr19	46484653	46484853	+	727.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16895.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.27	7.29	4.56	5.23	7.77	10.35	2.33	5.1	11.6	6.53	10.05	6.27
Merged-chr10-39450561-2	chr10	39450481	39450681	+	727.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	80782.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	2.42	7.8	3.99	9.65	6.14	7.84	15.94	14.47	8.65	9.04	10.05	7.21
Merged-chr14-45659130-3	chr14	45659021	45659221	+	727.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-978.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	10.5	7.04	13.12	6.84	3.27	7.84	7.64	8.75	8.65	4.02	18.09	6.58
Merged-chr5-64718320-3	chr5	64718223	64718423	+	727.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-85200.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	8.88	10.82	14.26	12.07	16.77	7.53	5.31	16.07	10.23	11.55	14.57	9.71
Merged-chr7-99887508-2	chr7	99887387	99887587	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	28269.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	6.06	4.02	6.85	5.63	2.45	14.74	5.98	5.16	11.8	12.55	14.07	13.78
Merged-chr15-100666493-2	chr15	100666407	100666607	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	2993.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	8.88	0.75	9.13	4.83	9.0	2.51	3.99	9.5	3.15	8.54	9.04	3.76
Merged-chr16-70873684-2	chr16	70873590	70873790	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	polypyrimidine|Low_complexity|Low_complexity	257265.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	4.04	7.55	20.54	10.05	6.55	11.6	1.99	13.99	3.15	8.54	6.53	3.13
Merged-chr19-32895834-1	chr19	32895734	32895934	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	138257.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.23	1.01	11.98	7.24	11.86	9.09	11.63	7.12	11.41	12.55	8.04	5.01
Merged-chr2-49472885-1	chr2	49472785	49472985	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172663, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	21399.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	2.42	5.79	6.85	5.23	7.36	8.78	3.65	5.16	10.82	2.51	7.54	3.13
Merged-chr11-118455779-1	chr11	118455679	118455879	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045902)	promoter-TSS (NR_045902)	-784.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	2.02	2.52	0.0	0.4	3.68	4.39	6.31	3.42	8.46	6.53	1.51	1.88
Merged-chr13-82947148-2	chr13	82947058	82947258	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248825.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	4.04	2.77	2.28	3.22	4.09	4.39	6.98	8.21	9.05	7.03	4.52	2.19
Merged-chr19-3378251-2	chr19	3378159	3378359	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-10598.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	8.08	6.04	13.12	7.64	9.82	6.27	2.66	6.81	9.64	12.55	8.54	7.21
Merged-chr5-91023339-2	chr5	91023249	91023449	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4168.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	3.23	4.28	14.26	8.85	6.55	3.14	13.29	14.33	1.57	1.0	12.56	2.19
Merged-chr14-62893451-2	chr14	62893296	62893496	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27854.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	1.62	3.27	4.56	2.01	6.55	3.76	3.32	6.42	4.52	2.51	8.54	2.51
Merged-chr14-46976234-2	chr14	46976136	46976336	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-21308.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	3.63	4.28	17.68	10.86	0.82	5.96	6.31	14.16	4.33	6.03	4.52	5.01
Merged-chr1-55239424-1	chr1	55239324	55239524	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175439, exon 1 of 1)	3' UTR (NM_175439, exon 1 of 1)	2247.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.25	4.78	3.42	4.42	6.95	4.39	5.31	5.83	12.98	3.01	10.05	4.39
Merged-chr2-59802917-1	chr2	59802817	59803017	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290659, intron 13 of 25)	intron (NM_001290659, intron 13 of 25)	79689.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	2.02	3.52	4.56	3.22	3.27	4.7	11.29	6.98	4.13	3.01	8.04	3.13
Merged-chr9-59548978-3	chr9	59548890	59549090	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	9450.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	4.04	5.53	10.27	10.46	5.32	7.21	5.65	10.43	12.98	7.03	14.57	6.89
Merged-chr15-101278810-2	chr15	101278679	101278879	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5522.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	9.29	16.6	0.0	3.22	7.77	9.72	2.33	0.81	7.87	15.06	3.01	4.07
Merged-chr5-64811754-3	chr5	64811681	64811881	+	727.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8258.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	10.9	10.06	7.42	11.66	6.55	13.17	6.31	4.85	8.65	7.53	11.05	12.53
Merged-chr1-131366069-3	chr1	131365972	131366172	+	727.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	ORR1E|LTR|ERVL-MaLR	-86509.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	11.31	10.56	11.41	8.45	13.91	20.38	11.29	6.48	9.44	12.55	12.56	4.07
Merged-chr6-42266142-3	chr6	42266031	42266231	+	727.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	1146.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	6.06	9.56	10.27	16.89	8.18	9.72	8.97	16.6	7.28	16.07	6.53	7.21
Merged-chr3-22008644-3	chr3	22008569	22008769	+	727.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67983.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.86	8.55	2.28	4.02	5.32	9.09	8.97	8.78	15.93	7.53	14.57	10.65
Merged-chr4-138007149-3	chr4	138007064	138007264	+	727.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	9339.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	10.9	8.55	5.7	10.05	11.45	10.98	6.31	11.97	10.23	9.04	15.07	7.21
Merged-chr5-137645336-2	chr5	137645204	137645404	+	727.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010571, exon 1 of 2)	exon (NM_010571, exon 1 of 2)	410.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	12.11	6.29	10.27	10.46	6.95	10.98	3.99	3.11	10.82	11.55	7.54	3.45
Merged-chr12-40565011-2	chr12	40564914	40565114	+	727.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118961.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.04	7.29	6.85	2.41	8.18	15.99	8.64	5.24	13.96	13.56	19.6	4.07
Merged-chr13-94354398-1	chr13	94354298	94354498	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	4525.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	13.73	16.35	13.12	8.85	3.68	5.02	0.66	0.17	2.95	3.51	1.51	1.25
Merged-chr8-27280179-3	chr8	27280081	27280281	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15864.0	NR_003107	732482.0	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	12.92	5.03	4.56	11.26	2.05	5.64	3.32	9.5	9.44	2.51	18.09	11.9
Merged-chr12-72847839-1	chr12	72847739	72847939	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69926.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	6.86	4.28	1.71	2.01	11.86	10.98	3.32	6.62	4.52	1.51	3.52	5.01
Merged-chr2-18884496-3	chr2	18884403	18884603	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-82685.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	5.25	6.54	14.26	6.84	7.36	6.27	4.98	6.76	9.05	5.52	5.02	9.08
Merged-chr7-118483196-3	chr7	118483111	118483311	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8764.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	12.11	9.06	3.42	4.02	7.77	10.35	7.31	6.48	11.8	21.59	13.06	2.19
Merged-chr11-23597489-1	chr11	23597389	23597589	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027860, intron 12 of 21)	intron (NM_027860, intron 12 of 21)	36142.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.0	3.02	3.99	8.04	6.95	6.59	6.31	9.25	4.33	2.01	7.03	6.89
Merged-chr18-39543014-1	chr18	39542914	39543114	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-55769.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.42	2.26	9.13	4.02	3.27	11.6	10.3	5.83	7.87	15.57	7.03	2.19
Merged-chr7-121271232-1	chr7	121271132	121271332	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-121064.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	1.21	0.5	0.0	0.0	9.41	15.99	9.63	6.67	7.67	6.53	15.07	4.39
Merged-chr15-79441635-3	chr15	79441537	79441737	+	727.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289899, exon 1 of 9)	5' UTR (NM_001289899, exon 1 of 9)	181.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	3.63	7.04	4.56	6.44	6.95	9.72	4.98	5.83	12.39	16.07	8.54	9.4
Merged-chr5-124900047-3	chr5	124899943	124900143	+	727.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37338.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	11.71	7.8	11.41	6.03	17.18	12.54	5.31	7.35	9.64	19.58	8.04	11.59
Merged-chr1-53775357-2	chr1	53775247	53775447	+	727.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 2 of 7)	L3|LINE|CR1	9868.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	2.42	7.55	3.99	8.85	7.36	6.9	9.3	7.93	2.36	14.06	7.54	7.52
Merged-chr4-55534626-2	chr4	55534536	55534736	+	727.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2161.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.29	3.02	11.98	4.42	9.0	10.66	9.97	9.45	8.26	10.54	11.05	5.95
Merged-chr3-152905993-2	chr3	152905880	152906080	+	727.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	76227.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.85	7.29	4.56	15.69	7.77	5.33	7.64	11.8	9.83	11.55	5.02	9.08
Merged-chr11-11529294-3	chr11	11529119	11529319	+	727.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39953.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.42	4.28	0.0	15.28	5.32	2.2	2.99	2.78	5.31	8.03	7.03	1.88
Merged-chr13-114837208-2	chr13	114837126	114837326	+	727.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008396, intron 28 of 29)	intron (NM_008396, intron 28 of 29)	18989.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	9.29	10.56	17.68	20.51	0.0	2.82	2.66	3.28	5.7	2.51	8.54	1.25
Merged-chr18-9619842-2	chr18	9619747	9619947	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007593)	promoter-TSS (NM_007593)	-378.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	1.21	4.02	3.42	5.63	9.0	3.76	6.31	8.02	9.05	12.05	16.08	8.46
Merged-chr2-151967177-2	chr2	151967109	151967309	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035478)	TTS (NR_035478)	408.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	6.86	5.28	9.13	2.41	11.86	6.59	5.31	5.64	7.47	5.02	5.53	5.95
Merged-chr8-72261282-2	chr8	72261195	72261395	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21277.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	4.44	5.79	2.28	8.45	6.95	5.02	4.32	9.11	14.36	14.56	12.56	12.53
Merged-chr15-6369424-2	chr15	6369206	6369406	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-17442.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	1.21	3.77	2.85	1.21	4.91	2.51	6.98	1.01	3.93	3.51	4.52	2.51
Merged-chr15-28182100-3	chr15	28181987	28182187	+	727.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21679.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	7.67	12.58	6.85	7.24	11.45	16.31	6.64	17.83	9.05	9.54	10.55	16.29
Merged-chr9-102522519-2	chr9	102522425	102522625	+	727.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024291, intron 4 of 10)	intron (NM_024291, intron 4 of 10)	16387.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	13.33	8.05	8.56	7.24	8.18	7.53	4.98	7.77	12.19	4.52	6.53	2.82
Merged-chr15-25633055-2	chr15	25632964	25633164	+	727.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	ID_B1|SINE|B4	10514.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	17.36	9.81	6.28	6.84	9.0	8.15	4.32	6.03	5.51	8.54	5.02	2.19
Merged-chr14-121445358-2	chr14	121445260	121445460	+	727.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59894.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	4.85	4.53	1.14	8.04	3.68	4.39	12.62	7.04	10.23	9.54	12.06	3.76
Merged-chr11-3102061-2	chr11	3101961	3102161	+	727.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21960.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	14.54	10.06	10.84	7.24	10.23	12.86	13.62	17.3	0.59	1.0	3.01	2.19
Merged-chrX-13482752-2	chrX	13482653	13482853	+	727.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	L2b|LINE|L2	15081.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	3.63	1.76	4.56	6.44	19.64	9.09	10.96	16.6	10.42	21.59	15.07	5.64
Merged-chr1-131287485-3	chr1	131287383	131287583	+	727.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7920.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	8.88	11.57	11.41	16.09	10.23	36.69	5.98	7.32	11.21	28.62	7.54	9.08
Merged-chr7-102771173-2	chr7	102771048	102771248	+	727.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3378.0	NM_147092	259096.0	Mm.377839	NM_147092	ENSMUSG00000073966	Olfr561	MOR14-2	olfactory receptor 561	protein-coding	3.23	3.52	6.85	13.67	9.82	6.27	11.96	16.79	9.64	8.03	12.56	7.83
Merged-chr19-32386712-2	chr19	32386628	32386828	+	727.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	1321.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.27	5.79	3.42	9.65	12.68	6.9	3.65	5.55	3.34	5.02	2.51	4.7
Merged-chr10-20841642-2	chr10	20841564	20841764	+	727.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-110883.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.63	7.55	5.7	11.26	8.59	7.21	10.96	14.19	3.34	5.52	7.54	5.33
Merged-chr5-137531855-3	chr5	137531753	137531953	+	727.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010312, intron 1 of 9)	CpG	1453.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	8.48	6.54	12.55	10.05	11.86	5.64	6.98	6.08	8.26	14.06	9.04	9.08
Merged-chr11-89061597-3	chr11	89061507	89061707	+	727.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	856.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	11.31	10.31	12.55	10.46	6.14	11.29	3.99	6.06	13.18	8.54	24.62	9.71
Merged-chr3-41303017-1	chr3	41302917	41303117	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	190182.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.4	0.5	0.0	3.22	0.82	1.25	5.65	6.31	0.0	0.0	2.01	0.31
Merged-chr18-23819342-1	chr18	23819242	23819442	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	15372.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.86	3.52	3.42	3.22	12.68	9.09	11.63	4.4	10.42	4.52	8.04	0.31
Merged-chr15-10714285-1	chr15	10714185	10714385	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030690)	promoter-TSS (NM_030690)	-187.0	NM_001356534	75646.0	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	2.83	1.51	1.71	0.8	11.45	3.76	5.98	2.64	1.77	3.01	6.53	4.7
Merged-chr9-15302218-1	chr9	15302118	15302318	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	-611.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	4.44	7.55	3.99	7.24	4.91	5.64	4.98	0.84	5.51	13.56	14.57	5.64
Merged-chr15-62153537-3	chr15	62153446	62153646	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	65905.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	2.42	2.52	7.99	8.04	4.09	4.08	9.63	3.45	6.69	11.55	10.05	4.39
Merged-chr6-134042088-1	chr6	134041988	134042188	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	6388.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	9.29	4.28	5.7	4.02	2.05	8.15	4.65	6.93	9.05	3.51	12.06	2.82
Merged-chr3-62506691-1	chr3	62506591	62506791	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028136, intron 1 of 24)	CpG	297.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	10.9	11.57	18.25	22.52	16.36	12.54	18.27	10.54	10.23	26.11	21.1	19.74
Merged-chr15-63123293-1	chr15	63123193	63123393	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	356315.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.83	1.01	2.85	6.03	4.91	1.57	4.32	5.16	7.28	9.04	7.03	9.71
Merged-chr2-21065202-2	chr2	21065109	21065309	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96335.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	3.23	5.03	5.13	4.42	8.59	6.27	15.28	16.37	10.03	12.05	8.04	12.53
Merged-chr16-10438216-3	chr16	10438099	10438299	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	9163.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	11.31	6.29	3.99	11.26	10.64	5.96	7.31	19.23	7.47	6.03	1.0	6.58
Merged-chr12-85510722-1	chr12	85510622	85510822	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16A2|LTR|ERVL	36832.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.86	2.52	4.56	3.22	12.68	10.03	1.33	2.92	14.75	12.55	9.04	6.27
Merged-chr8-26884027-1	chr8	26883927	26884127	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59604.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.65	7.29	6.28	3.22	7.36	0.94	1.33	8.24	2.75	6.03	3.52	4.7
Merged-chr9-119978401-3	chr9	119978364	119978564	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	4559.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	8.88	8.55	0.0	2.82	3.68	7.84	0.66	1.01	4.52	5.52	2.51	5.95
Merged-chr12-73737091-1	chr12	73736991	73737191	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	152295.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.65	1.51	7.99	4.83	4.09	6.59	7.31	6.67	5.9	1.0	10.05	5.01
Merged-chr9-40343960-1	chr9	40343860	40344060	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040728)	TTS (NR_040728)	2285.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.62	0.5	5.7	6.84	10.64	6.27	7.64	7.46	2.95	5.02	2.51	2.19
Merged-chr1-150759715-1	chr1	150759615	150759815	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024720, intron 15 of 106)	intron (NM_001024720, intron 15 of 106)	233720.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	1.62	0.75	6.85	2.41	8.18	3.45	6.31	4.79	1.18	0.5	1.51	1.25
Merged-chr14-45387682-2	chr14	45387580	45387780	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019425, intron 1 of 5)	intron (NM_019425, intron 1 of 5)	1116.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.81	0.75	5.13	2.01	1.64	8.47	0.66	7.32	6.88	4.02	8.54	6.89
Merged-chr9-40563333-1	chr9	40563233	40563433	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31950.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.04	2.77	6.28	6.84	2.86	3.14	12.95	7.21	8.85	9.54	5.53	7.21
Merged-chr11-31872968-3	chr11	31872858	31873058	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290676, exon 1 of 9)	exon (NM_001290676, exon 1 of 9)	2018.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	1.21	13.58	1.71	1.61	5.73	4.7	1.66	2.38	4.92	6.03	10.05	8.77
Merged-chr16-70661363-1	chr16	70661263	70661463	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	44938.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	2.42	1.51	3.42	8.45	4.91	6.9	4.32	8.38	1.77	1.0	1.0	0.94
Merged-chr2-167350442-1	chr2	167350342	167350542	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1264.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	1.62	6.29	5.7	2.01	13.09	3.76	4.32	5.19	6.88	4.52	5.02	10.02
Merged-chr19-55299545-2	chr19	55299455	55299655	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	16481.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	7.27	7.8	6.85	0.0	2.86	9.72	7.31	5.89	11.6	8.54	9.55	3.13
Merged-chr3-107149856-1	chr3	107149756	107149956	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-33287.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	3.23	7.8	14.26	14.88	0.0	0.0	0.0	0.0	0.0	0.0	0.5	0.31
Merged-chr6-86789841-1	chr6	86789741	86789941	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	3743.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	1.62	6.29	15.4	10.86	0.0	0.31	0.0	0.87	1.18	0.0	0.0	0.63
Merged-chr2-3499449-1	chr2	3499349	3499549	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015765, intron 6 of 13)	intron (NM_015765, intron 6 of 13)	13365.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	4.85	9.31	3.42	4.02	3.68	5.64	2.66	7.79	4.72	5.52	4.52	2.51
Merged-chr1-156614361-1	chr1	156614261	156614461	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	55574.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	1.21	0.75	1.71	2.41	2.05	5.96	1.99	5.72	1.77	2.51	0.0	4.07
Merged-chr7-75653917-2	chr7	75653816	75654016	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-194422.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	10.09	8.8	2.28	6.03	4.91	9.72	2.99	7.51	5.9	9.54	9.04	1.25
Merged-chr9-44391627-1	chr9	44391527	44391727	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021395, exon 26 of 26)	3' UTR (NM_021395, exon 26 of 26)	-5300.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	4.44	3.77	1.71	2.41	6.55	7.53	1.99	3.06	11.8	3.51	2.01	4.39
Merged-chr4-88035630-1	chr4	88035530	88035730	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2223.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.04	5.79	5.13	4.02	11.86	4.7	4.32	2.02	9.05	3.01	3.52	8.77
Merged-chr2-24359503-2	chr2	24359404	24359604	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-8171.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	9.69	11.82	7.42	2.01	2.45	15.68	2.66	1.6	10.62	21.59	6.53	3.13
Merged-chr2-62641991-1	chr2	62641891	62642091	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	4264.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	5.25	2.26	3.42	4.42	3.27	4.39	5.65	6.28	6.88	1.51	1.0	1.25
Merged-chr1-36613209-2	chr1	36613114	36613314	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19882.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	16.56	5.28	11.41	10.46	10.64	5.64	2.99	5.52	2.16	1.51	3.52	8.46
Merged-chr1-133661829-1	chr1	133661729	133661929	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-430.0	NM_001276767	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	2.83	4.02	4.56	1.61	6.14	0.63	2.66	6.03	3.74	4.02	4.52	7.21
Merged-chr11-32555569-1	chr11	32555469	32555669	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	22303.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.62	2.52	2.28	0.8	3.27	2.51	2.66	2.3	9.05	5.52	6.53	4.07
Merged-chr15-6403610-1	chr15	6403510	6403710	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	16862.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.63	4.78	10.27	7.24	6.55	4.7	6.64	13.32	4.13	2.51	5.53	5.01
Merged-chr4-45523185-1	chr4	45523085	45523285	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	7643.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.23	4.53	2.28	2.01	3.68	3.45	8.97	6.17	2.36	6.53	6.53	3.45
Merged-chr6-91111321-1	chr6	91111221	91111421	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018815, intron 1 of 39)	intron (NM_018815, intron 1 of 39)	5505.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	3.23	4.28	3.42	2.41	2.86	2.51	9.97	4.91	1.97	0.5	4.52	0.31
Merged-chr6-83102243-1	chr6	83102143	83102343	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081266, exon 1 of 9)	exon (NM_001081266, exon 1 of 9)	727.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	6.86	7.55	3.42	7.64	10.64	7.21	5.65	2.55	7.67	3.01	9.55	8.14
Merged-chr8-107116203-3	chr8	107116104	107116304	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19659.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	16.15	4.28	14.83	2.82	6.95	7.21	9.97	7.01	11.6	13.56	15.58	1.88
Merged-chr11-74484187-2	chr11	74484100	74484300	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	105958.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	9.29	5.53	10.27	8.85	6.95	4.39	1.33	3.64	11.21	7.53	12.56	5.64
Merged-chr9-51076001-1	chr9	51075901	51076101	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033534, intron 2 of 7)	intron (NM_001033534, intron 2 of 7)	1093.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	6.06	2.01	2.28	8.45	4.5	7.53	2.66	6.64	1.97	2.51	3.01	5.33
Merged-chr5-122647715-1	chr5	122647615	122647815	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038845, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	-2709.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	9.29	5.28	0.0	6.44	7.36	2.2	2.99	6.67	8.65	3.01	8.04	4.07
Merged-chr3-51156823-3	chr3	51156731	51156931	+	726.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67616.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	9.69	5.28	10.84	12.07	15.55	8.78	6.31	9.03	16.52	17.57	10.55	19.42
Merged-chr12-17774982-3	chr12	17774902	17775102	+	726.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	84193.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.67	8.05	15.97	5.63	8.59	10.03	10.3	6.42	19.87	17.07	40.7	15.98
Merged-chr11-54648758-3	chr11	54648673	54648873	+	726.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 16 of 28)	intron (NM_001252494, intron 16 of 28)	52627.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.65	8.3	1.71	8.04	16.77	10.66	5.98	14.78	15.34	19.08	11.05	10.02
Merged-chr1-156860023-2	chr1	156859902	156860102	+	726.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028333, intron 4 of 4)	intron (NM_028333, intron 4 of 4)	20979.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	7.27	5.79	9.13	15.28	9.0	12.23	5.98	11.24	3.93	9.04	6.53	6.58
Merged-chr7-31019389-2	chr7	31019287	31019487	+	726.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	20930.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	2.42	4.28	4.56	5.23	5.32	8.47	4.65	12.08	9.24	15.06	8.04	11.9
Merged-chr9-44199773-2	chr9	44199667	44199867	+	726.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	34279.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	8.88	6.04	13.69	13.67	8.18	5.64	9.3	12.5	7.47	1.51	1.0	2.51
Merged-chr2-57331460-3	chr2	57331376	57331576	+	726.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 6 of 16)	RSINE1|SINE|B4	93094.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.44	7.29	2.28	8.85	10.64	6.9	7.64	10.6	9.83	6.53	13.06	6.27
Merged-chr7-25179685-1	chr7	25179585	25179785	+	726.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	24616.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	5.65	6.79	5.13	0.8	6.14	8.15	10.3	6.84	8.85	7.53	7.03	5.95
Merged-chr6-108574078-2	chr6	108573976	108574176	+	726.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	49091.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	8.08	6.54	14.26	9.65	11.45	9.09	6.98	15.87	1.97	0.5	2.01	1.25
Merged-chr9-47738917-3	chr9	47738810	47739010	+	726.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	79298.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	7.67	5.28	9.7	8.85	9.82	9.09	4.65	15.45	12.59	10.54	15.58	5.95
Merged-chr2-130577817-2	chr2	130577663	130577863	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011025)	TTS (NM_011025)	1594.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	5.25	6.54	1.71	4.83	9.82	22.58	7.97	9.79	6.1	2.01	6.03	0.63
Merged-chr6-88034581-2	chr6	88034469	88034669	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	10448.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	7.67	7.29	4.56	5.23	9.0	6.9	3.32	8.72	2.95	5.02	3.01	2.82
Merged-chr13-93778349-1	chr13	93778249	93778449	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 1 of 7)	L1_Mus2|LINE|L1	6670.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	8.48	6.54	4.56	3.62	13.09	5.02	7.97	7.93	2.75	1.0	3.01	2.82
Merged-chr15-87077987-2	chr15	87077872	87078072	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-466327.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.81	0.5	2.28	1.61	3.68	4.39	6.64	3.2	2.95	5.02	7.54	4.07
Merged-chr18-44724614-2	chr18	44724485	44724685	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001085373, exon 3 of 19)	exon (NM_001085373, exon 3 of 19)	-62319.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	8.08	4.53	6.85	9.25	9.0	10.98	6.31	8.27	2.56	9.04	1.51	5.01
Merged-chr5-109596839-2	chr5	109596735	109596935	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37842.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.83	3.02	4.56	4.83	0.82	4.39	8.3	6.31	16.72	18.08	5.02	10.96
Merged-chr9-123856945-3	chr9	123856792	123856992	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011798, intron 1 of 1)	Charlie10b|DNA|hAT-Charlie	-4993.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	8.88	8.05	9.7	5.23	7.77	5.02	2.66	3.22	6.29	5.02	9.04	3.45
Merged-chr9-31285023-2	chr9	31284906	31285106	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13605.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	6.06	2.52	1.71	2.01	9.0	1.88	5.31	5.41	12.39	4.52	5.02	5.95
Merged-chr12-76324870-2	chr12	76324797	76324997	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001101471)	promoter-TSS (NM_001101471)	6.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	6.06	5.28	3.99	7.64	5.73	4.39	13.29	10.23	4.92	8.03	4.02	7.21
Merged-chr15-4028035-3	chr15	4027919	4028119	+	726.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-613.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	7.27	5.28	11.98	2.82	8.18	13.17	4.32	9.0	12.19	10.04	13.57	12.22
Merged-chr15-100216300-3	chr15	100216197	100216397	+	726.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159361, exon 38 of 38)	3' UTR (NM_001159361, exon 38 of 38)	-11562.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	7.27	4.78	5.7	8.45	15.55	5.64	11.29	8.89	13.18	6.53	11.56	10.34
Merged-chr7-45739536-3	chr7	45739416	45739616	+	726.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	2962.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	8.48	9.31	10.27	3.62	4.09	9.41	3.32	6.98	15.14	8.54	16.08	5.95
Merged-chr2-68886296-3	chr2	68886199	68886399	+	726.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	RMER10B|LTR|ERVL	24858.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	7.67	6.79	1.14	6.84	6.14	4.39	4.98	8.83	9.05	4.02	12.06	9.08
Merged-chr5-30709953-2	chr5	30709852	30710052	+	726.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1612.0	NM_001356949	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	10.9	5.53	3.99	4.02	7.77	8.47	2.99	8.86	12.78	10.04	12.56	9.4
Merged-chr12-8313931-3	chr12	8313807	8314007	+	726.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	474.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.23	7.55	8.56	18.5	11.86	12.54	11.96	15.84	9.44	10.54	22.61	5.33
Merged-chr11-108353077-1	chr11	108352977	108353177	+	726.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9189.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	1.21	2.01	5.13	10.86	8.59	6.9	9.63	15.87	0.98	0.0	0.0	1.88
Merged-chr17-34377512-3	chr17	34377381	34377581	+	726.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111094, intron 1 of 9)	intron (NM_001111094, intron 1 of 9)	349.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	5.65	9.06	1.71	2.01	8.18	3.14	1.0	1.18	5.51	2.01	3.01	1.88
Merged-chr11-59965424-3	chr11	59965335	59965535	+	726.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-491.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	11.31	6.04	3.99	4.42	14.73	7.21	3.99	4.54	8.85	4.52	7.54	11.9
Merged-chr6-54667943-2	chr6	54667845	54668045	+	726.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-13679.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.44	7.55	4.56	6.44	3.68	5.02	7.64	3.42	0.79	4.52	8.04	3.76
Merged-chr2-132217253-2	chr2	132217166	132217366	+	726.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30522.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	6.06	5.53	11.41	4.83	7.77	9.41	5.31	9.64	15.93	4.52	16.08	12.22
Merged-chr13-24614128-2	chr13	24614040	24614240	+	726.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-466.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	7.27	5.79	1.14	14.48	9.82	11.29	3.65	4.18	11.41	9.54	6.03	9.08
Merged-chr3-107630741-3	chr3	107630645	107630845	+	726.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153563, intron 1 of 20)	intron (NM_153563, intron 1 of 20)	965.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	11.71	10.06	11.41	3.62	8.18	7.21	4.65	8.38	19.67	10.54	17.08	6.89
Merged-chr2-163583984-1	chr2	163583884	163584084	+	726.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18330.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	2.83	3.52	9.7	3.22	6.14	12.86	4.98	7.6	5.11	4.52	8.54	2.51
Merged-chr4-59753741-2	chr4	59753641	59753841	+	726.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001015681, exon 4 of 4)	3' UTR (NM_001015681, exon 4 of 4)	30114.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	25.44	9.06	13.69	10.05	12.27	14.42	3.65	6.5	9.83	7.53	13.06	1.25
Merged-chr5-36483956-2	chr5	36483844	36484044	+	726.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	341.0	NM_001170454	231151.0	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	6.86	15.34	7.42	5.23	15.14	15.99	8.3	9.62	12.39	3.01	13.06	12.53
Merged-chr7-88259859-2	chr7	88259764	88259964	+	726.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-18221.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.65	4.02	3.42	7.24	7.36	11.29	6.31	8.61	6.49	13.05	14.07	7.52
Merged-chr4-9111175-2	chr4	9111055	9111255	+	726.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158138.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	1.62	2.77	4.56	5.63	11.05	9.09	6.64	15.06	9.24	10.04	4.52	7.52
Merged-chr16-31755207-3	chr16	31755108	31755308	+	726.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	858.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	8.08	10.31	17.11	9.25	7.77	11.6	8.3	11.58	12.19	9.04	11.05	1.25
Merged-chr17-83397729-4	chr17	83397597	83397797	+	726.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46766.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	2.42	7.55	6.28	6.44	11.45	3.45	7.31	9.5	11.01	8.54	8.04	4.07
Merged-chr1-185208520-2	chr1	185208419	185208619	+	726.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	4351.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	5.25	7.55	5.13	3.22	7.77	4.08	8.3	18.34	9.64	5.02	9.04	11.59
Merged-chr14-55879813-3	chr14	55879708	55879908	+	726.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019820, exon 3 of 3)	3' UTR (NM_019820, exon 3 of 3)	4448.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	7.67	6.79	15.97	5.63	8.59	7.21	6.31	9.79	17.9	13.56	23.62	6.58
Merged-chr1-155108571-3	chr1	155108404	155108604	+	726.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8868.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	4.85	4.53	7.42	5.63	4.91	8.78	5.98	2.27	7.67	10.54	11.56	2.82
Merged-chr10-99264542-4	chr10	99264441	99264641	+	726.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026268, intron 1 of 2)	intron (NM_026268, intron 1 of 2)	1310.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	9.69	8.3	10.84	5.63	8.18	7.53	5.65	5.02	10.82	8.54	9.04	9.71
Merged-chr8-85456736-1	chr8	85456636	85456836	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23895.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	7.67	4.53	3.99	6.44	7.77	10.35	1.66	7.09	3.54	9.04	8.54	2.51
Merged-chr2-158180951-2	chr2	158180852	158181052	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11056.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	3.23	6.04	0.0	2.41	2.86	8.47	1.66	7.85	13.18	19.08	5.02	2.19
Merged-chr5-113226643-2	chr5	113226549	113226749	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033428)	promoter-TSS (NM_001033428)	-260.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	5.65	7.8	10.84	8.45	9.0	10.03	4.98	4.93	0.59	1.0	0.5	0.63
Merged-chr8-122989186-1	chr8	122989086	122989286	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	53098.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.63	8.55	2.85	4.42	11.45	5.33	2.99	6.62	7.67	3.01	6.53	4.07
Merged-chr5-145167660-1	chr5	145167560	145167760	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	447.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	5.25	5.28	2.85	5.23	6.55	7.53	6.64	5.69	7.87	6.03	4.52	4.7
Merged-chr5-77357913-2	chr5	77357848	77358048	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47464.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	4.85	5.28	7.42	5.63	7.36	8.78	18.27	9.93	6.29	7.53	17.08	7.52
Merged-chr17-10356208-2	chr17	10356094	10356294	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31592.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.27	3.77	10.84	5.23	6.55	11.29	8.64	11.89	7.08	5.02	12.06	4.07
Merged-chr5-111103583-2	chr5	111103491	111103691	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	99447.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	8.08	8.05	5.7	3.62	9.0	2.82	4.65	8.55	1.38	0.0	0.5	5.01
Merged-chr17-35394605-2	chr17	35394453	35394653	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_051981, exon 2 of 3)	non-coding (NR_051981, exon 2 of 3)	454.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	6.86	11.57	1.71	6.03	16.36	11.92	7.31	2.02	14.75	13.05	14.57	6.27
Merged-chr1-84590363-3	chr1	84590261	84590461	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-105478.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	6.46	10.31	17.68	8.45	7.36	7.53	5.98	23.44	17.7	11.55	15.07	5.95
Merged-chr1-136675497-2	chr1	136675402	136675602	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7894.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	5.25	9.81	3.42	9.25	13.09	12.23	10.63	9.31	15.34	17.07	13.06	6.27
Merged-chr6-125083173-1	chr6	125083073	125083273	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163269)	TTS (NM_001163269)	11896.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	7.67	3.77	6.28	2.41	6.14	1.88	7.97	7.09	1.18	7.53	3.52	4.7
Merged-chr1-74784586-3	chr1	74784496	74784696	+	726.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009526, exon 4 of 4)	exon (NM_009526, exon 4 of 4)	-7423.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	11.31	9.31	9.13	5.23	7.77	10.03	12.95	8.13	12.59	13.56	14.57	12.84
Merged-chr12-102436222-3	chr12	102436129	102436329	+	726.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	3584.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.65	4.53	11.41	11.26	3.68	5.02	5.98	5.78	12.0	7.53	5.02	16.6
Merged-chr12-54489856-2	chr12	54489777	54489977	+	726.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98559.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	10.09	5.53	9.13	6.03	4.5	8.15	2.66	6.81	8.46	11.55	17.08	7.52
Merged-chr7-139298639-2	chr7	139298538	139298738	+	726.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50156.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.44	9.81	9.7	9.25	15.55	7.53	7.31	15.9	5.7	6.53	6.53	6.89
Merged-chr14-104868312-3	chr14	104868213	104868413	+	726.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	229166.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	4.04	9.56	7.42	22.12	9.0	10.35	13.95	12.67	28.13	12.05	13.06	5.95
Merged-chr15-27863191-2	chr15	27863087	27863287	+	726.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	162661.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	10.5	7.04	10.27	12.07	5.73	17.87	4.65	9.9	7.47	12.55	4.52	4.39
Merged-chr12-41407802-2	chr12	41407697	41407897	+	726.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	ORR1C1-int|LTR|ERVL-MaLR	78260.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	8.48	8.05	10.84	7.64	12.68	10.98	8.64	10.49	9.64	2.51	5.02	2.51
Merged-chr7-24474089-1	chr7	24473989	24474189	+	726.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-7934.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	4.04	8.3	5.13	2.41	8.18	8.47	5.31	8.44	14.75	5.52	7.03	4.39
Merged-chr4-133675167-3	chr4	133675056	133675256	+	726.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1990.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.67	7.04	10.27	6.03	11.45	6.27	4.98	2.78	11.41	8.03	7.54	5.64
Merged-chr2-71209558-3	chr2	71209457	71209657	+	726.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2149.0	NM_001198875	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	4.44	6.54	8.56	5.23	16.36	9.72	5.31	10.35	9.05	10.04	9.04	7.52
Merged-chr8-70743431-1	chr8	70743331	70743531	+	726.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	CpG	-11248.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	1.21	0.25	0.0	1.61	6.14	8.78	5.31	6.56	2.56	2.01	0.5	1.57
Merged-chr16-45371258-2	chr16	45371172	45371372	+	726.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37781.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	7.27	8.3	9.13	7.24	13.09	6.27	10.96	13.04	2.56	0.5	1.0	5.33
Merged-chr14-72685053-3	chr14	72684985	72685185	+	726.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	24918.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	16.15	3.52	5.13	10.86	11.05	15.99	7.97	10.51	10.62	9.04	9.04	5.64
Merged-chr13-97544455-3	chr13	97544346	97544546	+	726.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15554.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.86	10.06	7.99	10.46	9.41	13.17	9.63	17.33	8.85	11.55	9.55	11.28
Merged-chr1-171703275-2	chr1	171703177	171703377	+	726.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007649, intron 3 of 3)	(TGGGGG)n|Simple_repeat|Simple_repeat	21285.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	6.86	6.29	9.13	4.42	8.59	1.88	9.3	6.95	5.31	2.51	13.06	11.9
Merged-chr7-102015029-2	chr7	102014919	102015119	+	726.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133947)	TTS (NM_133947)	3136.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	5.79	9.7	1.61	8.59	9.72	8.97	9.95	10.82	10.54	7.54	1.57
Merged-chr4-43820382-3	chr4	43820297	43820497	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019474)	TTS (NM_019474)	1036.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	15.34	6.54	12.55	14.48	4.91	5.96	11.63	14.64	9.64	10.54	8.54	7.52
Merged-chr2-3630985-3	chr2	3630879	3631079	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82479.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	12.92	5.79	9.7	10.05	11.86	10.66	6.98	11.38	9.64	8.54	15.58	7.83
Merged-chr1-92659564-3	chr1	92659463	92659663	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10722.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	11.71	7.29	9.13	26.14	8.18	6.9	11.96	20.02	9.83	13.05	11.05	15.35
Merged-chr11-117847658-3	chr11	117847562	117847762	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-1575.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	19.38	8.55	10.84	7.24	9.41	5.33	6.64	7.79	13.96	15.06	12.56	6.58
Merged-chr10-80748829-3	chr10	80748742	80748942	+	726.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6361.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	18.17	8.3	10.27	7.64	11.86	6.27	10.63	5.69	14.55	19.08	12.06	9.4
Merged-chr3-53448429-3	chr3	53448349	53448549	+	726.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14809.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	8.88	7.29	11.98	11.26	10.64	12.23	6.98	13.91	17.31	6.53	11.56	8.14
Merged-chr9-56464022-3	chr9	56463904	56464104	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	45385.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	10.5	8.55	6.85	6.84	9.82	5.64	3.65	5.24	9.44	11.05	9.04	8.46
Merged-chr11-70306277-3	chr11	70306166	70306366	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR73|LTR|ERV1	16264.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	6.86	8.55	19.97	12.47	10.64	16.62	8.3	12.48	6.29	2.51	10.55	8.77
Merged-chr14-14552346-3	chr14	14552248	14552448	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-150677.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	7.27	8.3	5.7	15.69	3.27	9.09	20.26	9.84	6.49	5.02	7.54	7.83
Merged-chr13-42866753-3	chr13	42866632	42866832	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	485.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.65	7.55	5.13	5.23	11.45	7.84	12.95	9.06	7.87	5.02	7.54	4.07
Merged-chr2-33429529-3	chr2	33429428	33429628	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1796.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	2.42	6.04	9.7	6.44	6.55	5.96	4.65	9.5	12.98	1.0	9.55	7.52
Merged-chr1-84467931-3	chr1	84467830	84468030	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-183285.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	8.08	8.05	23.96	21.72	7.77	8.15	18.27	26.83	10.42	10.04	7.54	8.46
Merged-chr3-88140975-3	chr3	88140870	88141070	+	726.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1402.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	2.42	3.02	10.84	2.82	3.68	4.7	1.66	5.55	4.52	4.52	6.53	5.95
Merged-chr8-128456566-2	chr8	128456435	128456635	+	726.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	97294.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	5.65	5.79	9.13	10.46	8.18	8.47	15.61	10.82	8.46	2.51	3.52	1.57
Merged-chr14-73105580-2	chr14	73105467	73105667	+	726.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36943.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.44	6.04	2.28	12.87	15.14	11.6	8.3	11.69	8.65	5.02	10.05	5.64
Merged-chr15-30427567-3	chr15	30427466	30427666	+	726.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	254973.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	6.46	7.04	5.7	12.07	6.95	8.15	6.64	14.13	12.39	7.53	12.06	4.39
Merged-chr6-57582567-3	chr6	57582476	57582676	+	726.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025992, intron 1 of 22)	MER57E1|LTR|ERV1	1584.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	9.69	7.55	6.28	7.64	8.59	5.64	2.99	11.47	14.95	24.1	16.08	8.46
Merged-chr15-99121047-2	chr15	99120933	99121133	+	726.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17D2|LTR|ERVK	-5812.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.83	2.52	1.71	0.8	11.05	10.98	3.99	7.09	4.33	11.55	18.09	6.58
Merged-chrX-9473504-3	chrX	9473414	9473614	+	726.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4190.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	10.09	7.29	2.28	9.25	13.5	27.91	9.3	7.99	18.49	10.04	10.55	8.77
Merged-chr16-22264849-3	chr16	22264750	22264950	+	726.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1155.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	8.08	10.82	7.99	10.05	10.64	14.74	8.3	9.45	13.37	9.04	17.08	10.34
Merged-chr9-88406035-3	chr9	88405935	88406135	+	726.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359958, intron 8 of 28)	intron (NM_001359958, intron 8 of 28)	32916.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	6.46	4.78	13.69	16.89	2.86	5.64	8.3	12.62	9.83	12.55	16.08	8.14
Merged-chr11-23272244-3	chr11	23272153	23272353	+	726.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035226, intron 5 of 25)	B2_Mm1t|SINE|B2	16212.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	8.48	6.79	10.27	12.47	8.59	3.76	5.98	11.02	12.19	6.53	7.54	10.65
Merged-chr12-40657096-3	chr12	40657033	40657233	+	726.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	211080.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	8.88	2.77	10.84	4.02	15.55	10.35	10.63	12.17	7.28	7.53	10.05	7.52
Merged-chr7-66137773-1	chr7	66137673	66137873	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	28258.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.81	1.51	0.57	0.8	1.64	0.63	9.63	2.02	1.57	2.01	1.0	1.25
Merged-chr5-99278454-1	chr5	99278354	99278554	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25527.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.25	4.02	6.85	3.62	13.09	5.02	3.32	5.02	3.54	5.02	0.5	3.13
Merged-chr13-111640457-1	chr13	111640357	111640557	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45721.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.4	3.27	12.55	5.63	6.95	8.47	10.3	7.51	2.95	11.05	8.04	6.27
Merged-chr3-132085342-1	chr3	132085242	132085442	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	50.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.42	2.77	0.57	17.7	3.27	4.08	8.64	4.77	7.28	7.53	10.05	2.82
Merged-chr19-40671394-1	chr19	40671294	40671494	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	11624.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.42	1.76	1.71	4.83	12.27	4.39	5.31	5.33	6.49	1.0	8.54	2.82
Merged-chr8-68117659-3	chr8	68117544	68117744	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143070.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	2.42	5.53	1.14	6.03	6.14	5.96	2.99	3.08	7.67	5.52	10.55	7.52
Merged-chr3-8959097-1	chr3	8958997	8959197	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5049.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.04	1.76	2.28	4.02	5.32	6.27	3.99	8.16	4.92	0.5	8.54	5.95
Merged-chr11-98052779-1	chr11	98052679	98052879	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146028, intron 1 of 10)	CpG	683.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	4.04	4.02	2.28	4.83	9.0	6.9	2.66	5.55	6.69	4.02	5.53	3.13
Merged-chr11-97415980-2	chr11	97415870	97416070	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-34190.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	6.86	5.79	13.69	11.66	6.55	8.15	6.31	5.92	6.49	14.06	6.03	14.72
Merged-chr12-32910249-2	chr12	32910141	32910341	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43548.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	8.08	11.07	3.42	1.61	7.77	15.05	1.0	12.73	7.28	3.01	11.56	9.71
Merged-chr1-55552694-3	chr1	55552577	55552777	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	146731.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	9.29	3.02	8.56	12.07	9.0	10.03	8.97	12.7	11.8	8.54	15.07	1.57
Merged-chr8-3278669-1	chr8	3278569	3278769	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330056, intron 1 of 21)	intron (NM_001330056, intron 1 of 21)	948.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	2.42	3.02	2.85	3.22	4.5	7.21	1.99	5.1	3.74	5.52	5.02	9.08
Merged-chr2-38336714-2	chr2	38336605	38336805	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2576.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	11.31	7.8	3.99	6.03	11.45	15.99	9.97	3.98	6.69	6.53	5.02	5.33
Merged-chr6-72217016-1	chr6	72216916	72217116	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153778, intron 2 of 2)	intron (NM_153778, intron 2 of 2)	18561.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	4.85	6.29	3.99	1.21	3.27	1.88	5.31	6.06	4.72	8.03	2.51	2.19
Merged-chr12-35824709-3	chr12	35824613	35824813	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100908.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	9.69	8.05	6.85	7.24	13.91	13.8	4.65	12.64	11.41	3.01	9.55	3.76
Merged-chr18-61398140-1	chr18	61398040	61398240	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029879)	promoter-TSS (NR_029879)	-240.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	5.65	3.52	15.97	1.61	6.55	6.9	7.97	9.87	4.92	4.02	6.53	7.52
Merged-chr1-174222310-1	chr1	174222210	174222410	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011465, intron 36 of 51)	MTD|LTR|ERVL-MaLR	28666.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.81	2.01	0.0	2.82	1.64	3.14	1.0	4.79	9.64	2.01	14.57	4.07
Merged-chr3-79528154-2	chr3	79528069	79528269	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39510.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	3.23	3.27	4.56	7.24	7.77	6.27	9.63	14.64	12.59	3.51	7.54	7.83
Merged-chr2-142606211-1	chr2	142606111	142606311	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	295253.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.63	5.53	7.42	8.04	4.91	10.35	3.99	8.72	10.23	4.52	8.04	5.64
Merged-chr16-12772735-1	chr16	12772635	12772835	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38655.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	2.42	0.0	1.14	2.41	0.0	3.76	5.98	6.7	2.95	5.02	3.52	4.39
Merged-chr4-133191068-1	chr4	133190968	133191168	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 6 of 8)	intron (NM_153423, intron 6 of 8)	-4587.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.42	3.27	7.99	4.42	6.55	5.96	4.98	11.07	6.29	4.02	3.52	5.01
Merged-chr6-97877588-1	chr6	97877488	97877688	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	-52229.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.25	5.28	2.85	1.61	9.41	5.02	4.65	7.96	0.98	3.01	2.01	1.57
Merged-chr18-69471883-1	chr18	69471783	69471983	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	125723.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.44	1.76	5.13	6.84	5.73	7.53	3.65	12.34	0.0	0.5	1.0	0.0
Merged-chr16-14237507-1	chr16	14237407	14237607	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013607, intron 9 of 41)	MER20|DNA|hAT-Charlie	53901.0	NM_001161775	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	7.67	3.52	6.85	4.02	2.86	10.98	3.65	7.04	5.7	8.03	3.52	8.14
Merged-chr16-20085431-1	chr16	20085331	20085531	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12123.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.4	2.01	1.14	5.63	3.68	4.39	4.98	7.35	2.75	14.06	1.51	4.7
Merged-chr7-141294048-1	chr7	141293948	141294148	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007878, exon 3 of 4)	exon (NM_007878, exon 3 of 4)	2042.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	4.04	2.01	8.56	6.44	6.95	8.15	2.99	7.18	8.06	4.52	14.57	4.07
Merged-chr6-88009407-1	chr6	88009307	88009507	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10388.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.63	1.51	3.99	10.46	5.32	8.47	4.98	6.67	6.1	9.54	2.51	6.27
Merged-chr10-63308785-1	chr10	63308685	63308885	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	30250.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	2.02	8.3	4.56	7.24	11.86	9.41	1.99	3.22	5.9	8.54	11.05	8.77
Merged-chr19-15802160-1	chr19	15802060	15802260	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122462.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	2.83	2.52	0.0	3.22	1.23	2.2	4.98	7.35	1.18	0.0	2.51	3.76
Merged-chr10-92142821-1	chr10	92142721	92142921	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028262, intron 3 of 12)	intron (NR_028262, intron 3 of 12)	-5598.0	NR_037219	100526517.0		NR_037219	ENSMUSG00000093227	Mir1251	mir-1251|mmu-mir-1251	microRNA 1251	ncRNA	4.04	3.27	6.85	4.42	22.91	8.15	6.64	8.58	13.18	8.54	5.02	0.63
Merged-chr14-66250361-1	chr14	66250261	66250461	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	30691.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.04	5.28	5.7	11.66	7.36	4.08	4.32	9.28	9.24	7.53	6.03	5.95
Merged-chr2-167417813-1	chr2	167417713	167417913	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3897.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	5.25	5.79	1.14	2.41	4.09	10.03	3.65	5.78	4.33	4.02	5.02	4.39
Merged-chr10-83353967-3	chr10	83353846	83354046	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6275.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	10.9	13.33	3.42	5.63	12.27	20.7	10.3	2.5	17.31	14.06	7.03	5.33
Merged-chr10-7041179-2	chr10	7041094	7041294	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18009.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.25	3.52	15.97	6.84	9.41	6.27	13.95	13.09	8.85	4.52	11.05	9.4
Merged-chr6-5637487-1	chr6	5637387	5637587	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-88152.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	5.25	5.03	4.56	2.41	1.23	1.57	4.32	5.13	2.95	3.01	2.51	2.82
Merged-chr9-61369041-1	chr9	61368941	61369141	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3325.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	8.88	3.77	5.13	5.63	6.55	9.41	2.33	3.48	12.59	12.05	7.03	8.14
Merged-chr15-38691459-2	chr15	38691399	38691599	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025494, intron 12 of 12)	intron (NM_025494, intron 12 of 12)	29595.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.04	1.76	2.28	1.61	4.5	5.33	6.98	10.99	12.39	6.53	9.55	4.07
Merged-chr10-99422491-1	chr10	99422391	99422591	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	159260.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.81	1.76	6.85	3.22	4.5	9.09	2.99	6.53	6.1	7.03	9.55	2.51
Merged-chr13-101694882-1	chr13	101694782	101694982	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-2252.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.25	1.26	1.14	0.8	3.68	4.39	5.65	4.07	4.33	8.54	4.02	2.19
Merged-chr6-52064575-1	chr6	52064475	52064675	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38374.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	6.06	4.78	7.99	6.44	7.77	2.51	1.99	7.88	6.88	7.03	3.52	1.25
Merged-chr17-34300982-1	chr17	34300882	34301082	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4885.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	10.09	7.55	1.71	5.63	2.86	3.76	2.66	1.35	3.15	3.01	5.02	2.19
Merged-chr8-22477814-2	chr8	22477720	22477920	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	3.23	7.29	4.56	3.22	4.91	6.9	12.29	5.78	12.59	6.53	14.07	6.58
Merged-chr2-169781986-1	chr2	169781886	169782086	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	148340.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.81	0.0	0.0	0.0	0.0	0.0	0.0	0.08	12.98	8.03	11.56	3.76
Merged-chr7-113167341-1	chr7	113167241	113167441	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25326.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	2.83	0.5	1.14	2.41	0.82	4.08	9.3	5.75	3.54	2.51	4.52	1.57
Merged-chrX-167013119-2	chrX	167013024	167013224	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57246.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	2.83	3.77	9.7	3.62	7.36	7.53	18.6	23.24	7.08	14.06	12.06	9.08
Merged-chr19-55491504-1	chr19	55491404	55491604	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	175447.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.82	0.0	0.0	0.03	10.62	7.53	14.57	6.58
Merged-chr5-99965659-3	chr5	99965553	99965753	+	725.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077265, intron 4 of 8)	intron (NM_001077265, intron 4 of 8)	13285.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	10.9	6.04	10.84	8.85	12.68	10.35	12.95	8.41	10.62	10.04	5.53	6.58
Merged-chr14-19889796-3	chr14	19889700	19889900	+	725.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038637, intron 4 of 4)	intron (NM_001038637, intron 4 of 4)	50875.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	5.65	6.04	10.84	12.07	8.18	7.53	11.63	15.93	10.23	5.52	10.55	8.77
Merged-chr3-65360698-3	chr3	65360599	65360799	+	725.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 11 of 13)	intron (NM_001357358, intron 11 of 13)	-11270.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	4.85	8.05	6.85	10.46	13.5	9.09	11.29	9.11	12.59	11.55	24.62	9.71
Merged-chr1-184169430-2	chr1	184169330	184169530	+	725.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135049.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	6.06	7.04	11.98	22.12	5.73	10.35	12.95	15.64	8.85	11.05	10.05	4.7
Merged-chr7-135680485-2	chr7	135680383	135680583	+	725.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 16 of 17)	intron (NM_001316681, intron 16 of 17)	-28169.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	10.5	6.04	5.7	5.23	7.36	11.29	8.3	7.85	9.05	8.03	28.64	7.83
Merged-chr13-54371679-2	chr13	54371598	54371798	+	725.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009946, intron 1 of 3)	CpG	349.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	6.46	10.56	10.27	8.04	2.45	2.2	4.98	3.5	12.39	4.52	15.07	12.22
Merged-chr17-46641281-2	chr17	46641182	46641382	+	725.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357130, intron 3 of 15)	intron (NM_001357130, intron 3 of 15)	4798.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	9.29	7.55	11.41	6.84	10.64	10.98	14.62	4.82	6.49	14.06	12.56	7.52
Merged-chr1-89070945-3	chr1	89070799	89070999	+	725.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133816, intron 1 of 5)	CpG	484.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	6.46	8.8	10.84	11.26	8.59	7.53	7.97	9.5	10.42	9.04	7.03	10.96
Merged-chr10-25058893-2	chr10	25058779	25058979	+	725.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131409.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.23	5.79	2.28	3.22	9.41	3.76	5.65	5.38	9.05	4.52	14.07	1.88
Merged-chr3-54361114-3	chr3	54361026	54361226	+	725.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	19.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	10.9	6.04	9.13	16.89	23.32	23.2	21.92	25.32	4.33	6.03	10.55	8.14
Merged-chr7-30325617-3	chr7	30325517	30325717	+	725.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3242.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	8.48	7.8	5.7	3.22	5.73	17.25	9.3	7.07	14.75	15.57	14.57	9.08
Merged-chr16-64884095-3	chr16	64884001	64884201	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	32100.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	2.83	9.56	3.99	10.05	8.18	9.41	4.65	9.28	8.46	8.03	16.58	8.46
Merged-chr15-76229559-3	chr15	76229458	76229658	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201385)	promoter-TSS (NM_201385)	-61.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	12.52	2.26	11.98	4.02	8.59	10.66	5.31	13.79	13.77	12.05	11.56	6.89
Merged-chr8-47947808-1	chr8	47947708	47947908	+	725.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42743.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	6.46	6.79	7.99	6.84	6.55	5.33	9.97	6.34	10.62	5.52	7.54	1.57
Merged-chr17-27911913-3	chr17	27911829	27912029	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	2623.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	12.11	15.85	11.98	12.07	8.59	8.47	7.64	10.43	7.08	9.04	4.52	5.95
Merged-chr5-105559308-3	chr5	105559207	105559407	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	L1MA5|LINE|L1	39836.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.85	10.82	12.55	6.03	8.18	7.53	8.97	4.01	12.98	14.06	15.07	7.21
Merged-chr15-73487761-1	chr15	73487661	73487861	+	725.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24799.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	4.44	3.02	7.42	3.22	4.91	9.72	6.64	7.01	7.67	1.0	6.53	4.7
Merged-chr6-135237534-2	chr6	135237453	135237653	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010352, exon 7 of 7)	exon (NM_010352, exon 7 of 7)	10331.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	11.71	3.02	16.54	7.24	10.23	8.15	4.98	7.68	2.95	2.51	5.02	0.63
Merged-chr14-13579106-3	chr14	13578970	13579170	+	725.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-91806.0	NM_177624	218739.0	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.4	0.0	0.0	0.0	5.32	1.57	7.31	11.33	6.29	2.01	7.54	6.89
Merged-chr8-110481190-1	chr8	110481090	110481290	+	725.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 24 of 86)	LTR16A1|LTR|ERVL	21166.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.81	0.25	0.0	0.0	0.0	0.0	0.66	1.21	11.01	3.01	16.58	8.77
Merged-chr10-51518072-3	chr10	51517986	51518186	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	27188.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.86	7.29	14.83	8.04	13.5	4.39	12.95	12.5	13.96	9.54	10.55	4.7
Merged-chr14-40937783-2	chr14	40937687	40937887	+	725.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10422.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	8.48	7.29	1.71	14.48	11.86	5.96	4.65	9.67	4.33	6.03	5.53	10.02
Merged-chr7-145198457-3	chr7	145198344	145198544	+	725.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132643, intron 19 of 22)	intron (NR_132643, intron 19 of 22)	9675.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.08	5.53	6.85	9.25	5.73	10.66	15.61	13.79	10.03	9.54	16.08	7.83
Merged-chr5-136087022-2	chr5	136086887	136087087	+	725.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	PB1D7|SINE|Alu	3071.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	3.23	6.04	0.0	2.01	5.32	11.29	3.32	4.99	9.05	13.05	5.02	5.95
Merged-chr5-99828693-2	chr5	99828582	99828782	+	725.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-74709.0	NR_131054	330133.0	Mm.447264	NR_131054	ENSMUSG00000105218	Gm38413	A830083F22|Gm43248	predicted gene, 38413	ncRNA	3.63	7.04	15.4	8.45	4.5	6.9	7.31	10.6	9.83	8.54	16.08	9.4
Merged-chr8-116237744-2	chr8	116237643	116237843	+	725.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-267272.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.86	5.53	2.28	9.65	16.77	8.78	14.28	10.51	8.26	9.54	7.03	6.89
Merged-chr7-100868728-3	chr7	100868647	100868847	+	725.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081116)	TTS (NM_001081116)	-5334.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.67	5.79	12.55	7.64	10.23	6.9	13.62	14.86	9.05	12.05	17.08	8.46
Merged-chr9-58233933-1	chr9	58233833	58234033	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008884, intron 3 of 7)	intron (NM_008884, intron 3 of 7)	12783.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	7.67	4.53	15.97	4.02	8.18	15.68	8.3	6.22	9.83	6.53	6.53	2.82
Merged-chr18-32856871-1	chr18	32856771	32856971	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-19584.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	2.02	1.01	2.28	4.02	6.14	8.78	3.99	10.01	7.67	2.01	7.03	4.7
Merged-chr7-141010669-1	chr7	141010569	141010769	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	75.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	5.25	6.29	1.71	6.44	6.14	6.27	5.31	6.31	5.9	2.51	4.02	2.51
Merged-chr10-117300617-2	chr10	117300526	117300726	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7758.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	7.67	5.79	11.98	3.22	4.5	5.96	1.33	7.32	5.11	7.03	9.55	6.58
Merged-chr1-87281798-1	chr1	87281698	87281898	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028889, intron 1 of 3)	intron (NM_028889, intron 1 of 3)	17445.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	2.83	4.53	1.14	8.85	7.36	10.35	10.3	7.88	8.65	8.03	7.03	7.21
Merged-chr12-28676187-1	chr12	28676087	28676287	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134052, intron 1 of 3)	intron (NM_134052, intron 1 of 3)	980.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	5.65	3.27	4.56	3.22	3.27	7.84	5.65	6.84	0.98	1.0	3.01	0.63
Merged-chr18-65742025-2	chr18	65741926	65742126	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 10 of 14)	MIRc|SINE|MIR	43758.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.65	4.53	3.42	4.42	4.91	8.47	12.62	6.59	8.46	5.02	11.56	7.52
Merged-chr7-30594761-3	chr7	30594669	30594869	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1827.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	9.69	17.61	10.27	6.44	9.41	39.82	10.3	3.9	22.62	21.59	16.58	9.08
Merged-chr6-85325282-3	chr6	85325193	85325393	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178639, intron 1 of 13)	intron (NM_178639, intron 1 of 13)	8129.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	5.25	6.79	13.12	6.03	14.73	7.84	5.98	6.95	12.59	13.56	9.55	7.52
Merged-chr17-69178842-3	chr17	69178749	69178949	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	19493.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	11.71	9.81	10.27	3.22	7.36	5.33	4.65	6.42	14.55	6.53	7.03	2.19
Merged-chr15-5141959-1	chr15	5141859	5142059	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1902.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	5.65	4.53	3.99	2.82	5.32	8.78	1.99	6.81	3.34	5.52	8.04	3.13
Merged-chr15-6509049-1	chr15	6508949	6509149	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	63716.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.23	5.03	3.42	5.23	11.45	3.45	4.98	7.35	6.1	5.02	7.03	0.31
Merged-chr1-192532400-2	chr1	192532306	192532506	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	238813.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	10.09	3.77	14.83	1.61	6.14	6.59	6.64	15.84	4.33	1.51	16.08	1.88
Merged-chr14-7977684-3	chr14	7977568	7977768	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 4 of 7)	intron (NM_007870, intron 4 of 7)	16514.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	8.08	5.03	4.56	12.07	8.59	9.72	5.98	6.62	12.0	3.51	3.52	7.83
Merged-chr2-145588155-2	chr2	145588061	145588261	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33179.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	8.48	9.56	8.56	6.03	2.05	9.09	5.98	8.47	2.95	2.51	7.03	4.7
Merged-chr9-37544571-2	chr9	37544464	37544664	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020518)	TTS (NM_020518)	5309.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	6.06	7.04	11.41	8.85	5.32	6.59	2.33	8.02	9.05	3.51	12.06	9.4
Merged-chrX-56949139-2	chrX	56949038	56949238	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93936.0	NM_009766	12209.0	Mm.10687	NM_009766	ENSMUSG00000031130	Brs3	BRS-3	bombesin-like receptor 3	protein-coding	1.62	1.01	4.56	0.0	4.09	8.15	6.64	10.82	7.28	14.56	8.54	4.07
Merged-chr5-135134718-3	chr5	135134617	135134817	+	725.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152882, intron 15 of 16)	intron (NR_152882, intron 15 of 16)	-14994.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	10.9	5.03	12.55	4.02	3.27	11.92	5.31	6.0	9.24	15.57	15.58	7.21
Merged-chr2-156722357-3	chr2	156722257	156722457	+	725.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	1078.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	7.67	8.8	5.13	7.64	12.68	25.09	5.65	8.21	8.85	9.04	12.56	10.34
Merged-chr11-19830848-3	chr11	19830736	19830936	+	725.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93606.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	11.31	7.04	9.13	8.04	16.77	10.35	3.99	10.91	11.8	13.56	12.56	5.33
Merged-chr19-41384018-3	chr19	41383889	41384089	+	725.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	1081.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.86	9.31	1.71	0.8	7.77	4.08	7.97	6.93	10.82	5.02	5.02	7.52
Merged-chrX-135569642-3	chrX	135569575	135569775	+	725.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	29102.0	NM_130888	170722.0	Mm.103373	NM_130888	ENSMUSG00000031410	Nxf7	Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2	nuclear RNA export factor 7	protein-coding	8.48	8.55	14.83	15.28	8.18	6.27	5.98	10.82	9.64	5.52	11.05	7.21
Merged-chr7-141579129-2	chr7	141579032	141579232	+	725.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	16952.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	8.08	2.77	2.85	8.45	17.59	9.72	8.97	8.97	7.67	5.02	10.05	6.27
Merged-chr7-35335291-2	chr7	35335148	35335348	+	725.383301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027897, intron 1 of 14)	intron (NM_027897, intron 1 of 14)	1011.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	12.11	5.28	6.85	6.44	8.59	7.53	5.65	7.26	7.87	10.54	9.55	5.01
Merged-chr14-30125199-2	chr14	30125099	30125299	+	725.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	102566.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	4.44	5.03	5.7	5.23	9.41	7.53	11.96	16.93	10.82	7.53	6.53	13.16
Merged-chr13-47224757-2	chr13	47224632	47224832	+	725.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30729.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	9.29	5.53	5.13	8.85	12.68	10.35	13.62	9.28	7.28	2.01	1.0	4.7
Merged-chr19-4085186-2	chr19	4085089	4085289	+	725.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013878, intron 3 of 6)	intron (NM_013878, intron 3 of 6)	1670.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	5.65	6.04	3.99	7.64	8.59	6.59	8.97	7.01	13.77	10.54	18.09	5.95
Merged-chr2-145123676-1	chr2	145123576	145123776	+	725.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-44099.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.4	0.5	0.0	0.0	10.64	26.34	10.63	6.36	2.36	0.0	0.0	0.0
Merged-chr13-95881623-1	chr13	95881523	95881723	+	725.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	10299.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.62	0.25	4.56	2.01	8.18	7.53	6.64	8.5	0.79	0.0	1.0	0.63
Merged-chr2-166185576-3	chr2	166185468	166185668	+	725.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29885.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	10.5	8.3	11.41	5.23	15.55	10.98	7.31	8.16	11.8	10.04	9.55	11.9
Merged-chr1-136137747-2	chr1	136137653	136137853	+	725.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	(TG)n|Simple_repeat|Simple_repeat	6363.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.06	5.53	6.28	10.86	4.5	6.59	7.31	8.07	8.26	14.06	12.06	10.65
Merged-chr12-103348745-2	chr12	103348624	103348824	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	7277.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	11.31	5.53	1.14	6.44	10.23	10.35	5.31	6.56	14.16	11.05	8.54	8.77
Merged-chr9-16307525-1	chr9	16307425	16307625	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	70706.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.42	4.78	6.28	8.04	9.41	7.21	7.97	5.97	4.52	7.53	10.05	4.07
Merged-chr11-85518606-2	chr11	85518494	85518694	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	165430.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	2.83	1.76	2.85	4.02	10.64	3.76	5.98	8.21	9.64	4.52	2.51	7.21
Merged-chr17-24650340-2	chr17	24650299	24650499	+	725.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357796)	promoter-TSS (NM_001357796)	-94.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	2.52	2.28	6.84	3.68	4.7	5.31	6.14	4.52	2.01	5.53	5.33
Merged-chr16-88372207-2	chr16	88372116	88372316	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81951.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	5.65	0.0	0.0	3.22	11.05	8.15	6.31	16.68	9.05	4.02	9.55	6.27
Merged-chr11-75155397-2	chr11	75155304	75155504	+	725.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	12748.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.63	6.04	10.27	9.65	3.27	7.21	5.98	11.61	4.52	7.53	5.53	6.27
Merged-chrX-23554710-2	chrX	23554622	23554822	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138329.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	4.44	5.53	3.42	14.88	4.91	3.14	7.97	10.82	9.64	5.52	15.07	7.83
Merged-chr18-3004667-1	chr18	3004567	3004767	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	118745.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	4.44	2.26	5.7	4.83	8.18	10.35	22.92	9.67	3.54	3.01	2.01	5.33
Merged-chr2-148698814-3	chr2	148698708	148698908	+	725.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019632, intron 9 of 10)	MTEb|LTR|ERVL-MaLR	17688.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	6.86	4.02	9.13	6.44	5.73	8.47	3.65	11.27	9.64	6.53	17.08	10.02
Merged-chr10-79892914-3	chr10	79892826	79893026	+	725.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001329541)	TTS (NM_001329541)	2073.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	8.88	5.03	5.13	12.47	7.36	12.23	3.32	6.64	18.29	15.57	9.55	4.7
Merged-chr1-131638907-2	chr1	131638801	131639001	+	725.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 1 of 9)	Zaphod2|DNA|hAT-Tip100	587.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	5.65	2.26	3.99	1.61	6.55	7.21	6.98	11.69	6.29	12.05	7.54	8.77
Merged-chr8-69206620-3	chr8	69206523	69206723	+	725.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2423.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	9.29	9.56	6.85	6.84	11.05	12.54	8.3	7.82	11.6	21.59	24.12	10.02
Merged-chrX-23384504-3	chrX	23384418	23384618	+	725.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19436.0	NM_026167	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	8.88	6.04	15.4	11.26	7.36	2.51	4.65	11.27	12.19	19.58	15.07	7.21
Merged-chr5-81022201-5	chr5	81022170	81022370	+	725.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	677.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	8.08	6.29	5.13	8.04	10.64	5.96	12.62	6.34	4.92	13.56	8.54	2.19
Merged-chr11-97022004-3	chr11	97021982	97022182	+	725.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4336.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	4.44	6.29	7.99	0.8	8.59	6.27	5.65	5.89	6.29	10.04	7.03	4.07
Merged-chr8-108718302-2	chr8	108718205	108718405	+	725.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	3661.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.67	4.02	14.83	10.86	11.45	10.66	9.97	13.37	4.13	2.01	7.03	3.76
Merged-chr18-46448974-2	chr18	46448879	46449079	+	725.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16837.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.62	2.01	4.56	0.8	9.41	1.25	5.65	8.07	9.44	9.04	8.04	9.08
Merged-chr6-29762753-2	chr6	29762652	29762852	+	725.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5691.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.44	10.06	1.71	8.85	4.91	12.54	10.63	9.11	4.92	6.53	7.54	1.25
Merged-chr12-57211814-2	chr12	57211671	57211871	+	725.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14299.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	10.09	7.29	14.83	1.61	11.05	10.03	14.28	7.6	3.74	8.03	10.05	4.39
Merged-chr2-129384157-3	chr2	129384087	129384287	+	725.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-13048.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.46	2.01	15.97	7.24	6.14	5.96	5.65	9.5	14.75	11.55	14.07	6.89
Merged-chr5-28321904-3	chr5	28321820	28322020	+	725.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028234, intron 1 of 18)	intron (NM_028234, intron 1 of 18)	4731.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	4.04	11.82	5.7	9.25	11.45	10.66	9.3	7.54	7.67	6.03	16.58	13.16
Merged-chr10-8251737-2	chr10	8251612	8251812	+	725.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 5 of 7)	intron (NM_177387, intron 5 of 7)	267113.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.25	4.53	9.13	5.63	12.68	6.9	4.65	7.32	8.85	15.06	22.11	7.83
Merged-chr4-101648763-3	chr4	101648605	101648805	+	725.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	922.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	8.88	2.77	4.56	3.62	6.14	9.09	6.98	10.85	10.23	11.05	26.13	5.64
Merged-chr5-104033245-1	chr5	104033145	104033345	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11449.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	3.63	7.55	5.13	4.42	1.64	10.66	0.66	6.2	4.92	3.51	7.54	8.77
Merged-chr7-19803169-2	chr7	19803076	19803276	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6367.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	4.44	10.31	2.28	6.03	13.91	11.29	9.63	7.71	14.55	7.03	4.02	3.45
Merged-chr10-44068816-1	chr10	44068716	44068916	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63970.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.46	3.52	7.42	3.22	3.27	3.76	8.64	6.59	11.01	9.04	3.52	8.77
Merged-chr6-48448597-1	chr6	48448497	48448697	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173428, exon 2 of 103)	exon (NM_173428, exon 2 of 103)	368.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	9.69	4.28	5.13	2.01	6.55	6.9	6.64	7.6	1.38	7.53	9.55	5.95
Merged-chr9-85842659-1	chr9	85842559	85842759	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164792)	promoter-TSS (NM_001164792)	-193.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	4.44	7.8	6.85	5.63	2.86	7.21	2.66	5.02	7.47	8.54	4.52	2.82
Merged-chr1-87205249-1	chr1	87205149	87205349	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009604)	promoter-TSS (NM_009604)	-562.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	1.62	0.5	1.71	4.02	3.27	6.59	2.99	4.79	1.57	5.02	9.55	4.39
Merged-chr1-142467401-2	chr1	142467251	142467451	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-1173346.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.81	7.8	6.28	8.04	6.95	5.96	11.96	3.93	4.33	4.52	5.53	3.45
Merged-chr13-120299473-2	chr13	120299372	120299572	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-920.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	11.71	7.55	7.99	8.45	8.18	14.11	6.31	8.07	5.51	2.51	15.58	6.27
Merged-chr12-35298911-1	chr12	35298811	35299011	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-104014.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	7.27	2.77	5.7	6.03	4.09	7.21	10.63	6.34	9.05	7.53	5.53	2.51
Merged-chr5-92145146-1	chr5	92145046	92145246	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	7208.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	4.44	5.28	2.85	4.42	3.27	5.64	2.33	8.47	9.83	6.03	3.01	1.57
Merged-chr14-105285424-1	chr14	105285324	105285524	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 1 of 7)	Lx8|LINE|L1	26751.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.63	4.53	9.7	4.02	0.82	3.76	5.98	7.51	7.28	5.02	12.06	2.82
Merged-chr4-154881500-1	chr4	154881400	154881600	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013783, intron 2 of 23)	intron (NM_013783, intron 2 of 23)	-9497.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	12.52	3.77	3.42	3.22	5.32	8.15	1.0	8.02	1.57	1.0	0.0	0.0
Merged-chr1-7053617-1	chr1	7053517	7053717	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35303.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	2.42	1.01	5.13	3.22	1.64	2.51	5.31	8.13	7.87	6.03	6.53	1.25
Merged-chr8-70620908-1	chr8	70620808	70621008	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_153074)	TTS (NM_153074)	4064.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	6.06	6.79	0.0	0.0	3.27	6.59	1.66	3.7	8.26	6.03	3.01	3.13
Merged-chr10-24727706-2	chr10	24727605	24727805	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15546.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	2.42	3.02	3.99	6.44	14.73	6.27	5.65	15.28	6.29	10.54	16.08	4.39
Merged-chr17-4736901-1	chr17	4736801	4737001	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101921.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	1.62	2.77	1.14	8.45	0.82	9.41	4.32	7.49	5.11	7.03	4.52	5.64
Merged-chr15-67145540-1	chr15	67145440	67145640	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	31342.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	5.65	4.28	4.56	0.8	9.0	26.97	11.63	4.85	8.46	3.01	3.01	1.57
Merged-chr1-24698635-1	chr1	24698535	24698735	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	19717.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.4	3.77	2.28	1.61	6.55	4.08	3.32	7.6	5.9	1.0	1.51	3.76
Merged-chr8-4329174-1	chr8	4329074	4329274	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	3964.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	6.06	3.52	3.42	2.82	3.27	4.7	7.31	4.63	5.9	4.52	12.56	3.45
Merged-chr2-166708750-1	chr2	166708650	166708850	+	725.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	5082.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.25	2.52	1.14	0.8	10.64	3.76	1.99	3.31	11.21	3.51	3.52	7.21
Merged-chr7-143614801-1	chr7	143614701	143614901	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175649, intron 5 of 7)	MTC|LTR|ERVL-MaLR	13044.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	1.62	3.27	0.0	3.22	2.05	0.63	6.31	7.18	3.34	2.51	0.5	3.45
Merged-chr8-125727503-1	chr8	125727403	125727603	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6700.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	6.06	6.79	6.28	1.21	7.77	4.39	12.29	6.14	7.28	10.04	4.52	4.07
Merged-chr5-64326443-3	chr5	64326302	64326502	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	96045.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.63	2.01	5.13	4.02	0.41	4.39	2.33	5.94	5.9	1.51	7.54	6.58
Merged-chr11-97604036-2	chr11	97603928	97604128	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045496, intron 1 of 3)	intron (NR_045496, intron 1 of 3)	5517.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	8.08	9.56	4.56	4.02	2.05	10.98	8.64	4.57	2.56	1.0	2.51	2.19
Merged-chr12-74013925-1	chr12	74013825	74014025	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	16164.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	4.04	6.54	3.42	5.63	2.05	5.96	4.65	6.73	5.31	7.03	12.56	6.58
Merged-chr15-67785826-1	chr15	67785726	67785926	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	473030.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.04	5.79	3.42	7.64	4.91	6.9	5.65	5.69	8.85	8.54	5.53	1.57
Merged-chr8-13675678-1	chr8	13675578	13675778	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1909.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.23	1.76	0.0	3.22	5.73	6.9	3.99	7.46	4.92	5.52	4.02	5.95
Merged-chr8-66861893-1	chr8	66861793	66861993	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	1676.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	7.27	5.53	15.97	3.62	7.77	1.88	2.66	5.89	4.33	7.03	4.02	2.51
Merged-chr18-45410950-1	chr18	45410850	45411050	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312905, intron 2 of 10)	ORR1B1|LTR|ERVL-MaLR	142090.0	NM_001312905	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	3.23	0.5	1.14	6.44	2.05	5.64	5.98	14.75	1.57	2.01	6.03	3.45
Merged-chr6-5633200-2	chr6	5633104	5633304	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92435.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	8.08	3.52	4.56	6.44	5.32	5.33	8.64	10.4	8.85	11.55	8.54	2.19
Merged-chr7-16160891-1	chr7	16160791	16160991	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_148946)	TTS (NM_148946)	-14504.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	6.46	5.03	0.57	0.8	6.55	7.84	1.66	6.31	3.93	3.51	7.54	2.51
Merged-chr6-72201027-1	chr6	72200927	72201127	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34550.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	4.44	5.53	5.7	6.44	7.36	4.39	4.32	6.87	4.52	5.02	5.02	2.82
Merged-chr19-25137752-1	chr19	25137652	25137852	+	725.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-99223.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	1.21	3.52	0.0	0.0	2.86	4.7	2.66	3.56	12.78	7.03	10.05	6.89
Merged-chr6-43462938-1	chr6	43462838	43463038	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20509.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	2.83	3.77	2.85	2.41	0.0	10.66	2.99	6.06	4.13	3.01	7.03	1.88
Merged-chrX-135620463-1	chrX	135620363	135620563	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029459, intron 5 of 9)	L1MC4a|LINE|L1	7242.0	NM_029459	75829.0	Mm.159593	NM_029459	ENSMUSG00000031411	Prame	4930534P07Rik	preferentially expressed antigen in melanoma	protein-coding	3.63	2.52	7.99	5.63	8.18	5.64	2.99	9.2	8.26	2.01	8.54	4.39
Merged-chr11-34001856-2	chr11	34001747	34001947	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-8654.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	14.54	4.78	0.0	3.62	13.09	6.9	8.3	8.19	5.9	6.03	10.55	4.7
Merged-chr19-22304553-1	chr19	22304453	22304653	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	-143655.0	NM_177341	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	4.85	5.79	3.99	8.85	6.55	8.47	5.31	12.84	5.9	5.52	3.52	2.82
Merged-chr14-79661315-1	chr14	79661215	79661415	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010701, intron 2 of 6)	CpG	868.0	NM_001310655	16840.0	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	6.46	2.52	2.28	4.42	5.32	6.59	4.32	5.27	5.31	7.53	5.53	1.25
Merged-chr13-54956175-1	chr13	54956075	54956275	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153131, intron 1 of 15)	CpG	6764.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	11.71	1.51	4.56	0.8	8.18	4.7	0.33	5.19	5.31	5.52	6.53	6.58
Merged-chr18-30267898-1	chr18	30267798	30267998	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-4967.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.04	10.82	3.42	11.26	0.0	0.0	0.0	0.0	0.2	0.0	3.01	0.63
Merged-chr12-34997922-2	chr12	34997822	34998022	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13161.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	8.08	4.28	3.99	11.26	10.23	8.47	11.63	17.05	0.79	1.51	0.0	1.88
Merged-chr17-80062922-1	chr17	80062822	80063022	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-654.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	3.23	5.03	9.13	4.02	7.36	2.51	1.99	9.9	6.88	7.53	6.53	5.01
Merged-chr7-18925361-3	chr7	18925290	18925490	+	724.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029877)	promoter-TSS (NM_001029877)	-498.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	11.31	8.55	9.7	3.62	4.91	13.17	5.98	8.33	12.98	9.54	13.06	12.53
Merged-chr18-54987741-6	chr18	54987552	54987752	+	724.958313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175751, exon 2 of 10)	exon (NM_175751, exon 2 of 10)	2528.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.86	6.79	2.85	7.64	5.32	8.15	2.99	6.48	8.46	13.05	15.07	8.14
Merged-chr6-83450853-3	chr6	83450774	83450974	+	724.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	5518.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	10.09	6.54	5.7	5.63	10.23	8.15	8.3	8.5	17.31	12.05	11.05	5.33
Merged-chr19-32470182-3	chr19	32470097	32470297	+	724.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15572.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	5.25	18.11	3.42	5.23	4.91	13.8	8.3	12.28	12.78	13.56	9.55	5.95
Merged-chr14-25466430-2	chr14	25466310	25466510	+	724.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	7225.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.81	5.28	6.28	9.25	12.27	6.27	7.97	8.38	5.9	5.52	3.52	2.19
Merged-chr7-135658373-3	chr7	135658212	135658412	+	724.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-5998.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	6.06	7.55	5.7	6.44	2.45	8.47	8.3	6.48	7.08	4.02	6.53	4.07
Merged-chr7-133154129-3	chr7	133154046	133154246	+	724.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25895.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	2.42	13.33	9.13	8.04	9.0	5.33	10.63	14.58	11.41	8.03	8.54	10.65
Merged-chr5-28243243-3	chr5	28243145	28243345	+	724.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	2543.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	6.86	7.55	9.7	12.47	7.77	10.66	8.3	14.1	7.28	11.05	19.6	2.51
Merged-chr6-116133935-3	chr6	116133838	116134038	+	724.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177412, exon 3 of 6)	exon (NM_177412, exon 3 of 6)	59436.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	16.96	8.8	2.85	8.85	19.23	19.13	5.65	9.34	10.82	4.52	12.06	11.59
Merged-chr1-181921783-2	chr1	181921694	181921894	+	724.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79393.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	6.46	6.54	10.27	6.44	4.09	8.47	7.31	9.2	2.56	5.02	7.03	4.7
Merged-chr18-62023315-3	chr18	62023208	62023408	+	724.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70233.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	14.54	6.29	2.85	8.85	6.14	8.78	3.99	8.13	15.14	11.05	5.02	1.88
Merged-chr15-64001610-3	chr15	64001518	64001718	+	724.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-3552.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.69	7.04	15.4	6.44	10.23	19.76	8.3	14.86	8.46	14.56	18.59	5.95
Merged-chr1-24681229-3	chr1	24681124	24681324	+	724.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	RSINE1|SINE|B4	2306.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.44	5.03	1.14	8.45	6.95	4.08	5.31	7.26	13.96	4.02	16.08	9.71
Merged-chr17-45620033-3	chr17	45619954	45620154	+	724.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-17952.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.85	7.8	15.4	6.84	22.09	10.66	12.95	10.93	10.42	16.07	12.06	5.33
Merged-chr3-88335178-1	chr3	88335078	88335278	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-745.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	4.85	4.02	5.7	4.42	8.18	6.9	4.98	6.5	18.29	1.0	8.54	7.21
Merged-chr16-18629999-2	chr16	18629888	18630088	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	-50.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	8.88	3.52	7.99	6.84	5.32	9.72	7.64	8.83	11.41	9.54	9.04	10.65
Merged-chr6-86659147-2	chr6	86659041	86659241	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10018.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.04	4.53	5.7	9.25	3.68	7.21	10.63	16.4	6.49	8.54	11.05	6.27
Merged-chr6-5365962-2	chr6	5365875	5366075	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17411.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.85	5.53	3.42	4.42	1.64	5.64	9.3	9.36	10.62	3.01	10.05	5.33
Merged-chr1-95596993-2	chr1	95596901	95597101	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	Lx8b|LINE|L1	70593.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.86	2.52	4.56	5.63	10.64	6.27	3.99	12.28	9.05	8.54	4.02	5.01
Merged-chr13-41505849-2	chr13	41505748	41505948	+	724.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18488.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.88	2.26	9.7	12.47	13.91	4.7	5.98	11.27	4.13	1.0	1.51	4.7
Merged-chr4-44233145-5	chr4	44233050	44233250	+	724.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11883.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	3.63	8.3	2.85	7.64	9.82	7.84	9.63	4.29	4.52	13.05	4.52	6.58
Merged-chr5-33821175-3	chr5	33821067	33821267	+	724.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21945.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	2.02	4.78	8.56	1.21	14.32	4.39	3.32	5.47	7.47	8.03	10.05	4.39
Merged-chr5-147899195-1	chr5	147899095	147899295	+	724.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4380.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	5.65	1.51	0.0	3.22	2.45	2.51	0.66	2.24	12.78	6.53	10.05	9.71
Merged-chr4-136124766-3	chr4	136124684	136124884	+	724.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19038.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.25	7.29	9.7	1.61	12.68	8.47	1.66	4.35	21.05	18.08	11.05	15.66
Merged-chr6-48703782-1	chr6	48703682	48703882	+	724.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153175, intron 2 of 2)	intron (NM_153175, intron 2 of 2)	4462.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	14.54	10.31	11.98	9.65	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.31
Merged-chr5-23844649-1	chr5	23844549	23844749	+	724.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-504.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	5.65	7.04	0.0	2.82	1.23	0.63	0.0	0.0	9.44	11.05	10.05	7.52
Merged-chr14-45142768-3	chr14	45142678	45142878	+	724.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 18 of 20)	intron (NM_001310534, intron 18 of 20)	76647.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	12.92	6.54	9.13	18.1	5.73	6.27	11.96	14.97	9.05	6.53	17.08	11.59
Merged-chr13-24445435-2	chr13	24445334	24445534	+	724.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	30312.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	7.27	8.8	5.7	6.84	9.82	6.9	6.64	6.87	6.1	7.53	6.53	12.53
Merged-chr12-98278463-3	chr12	98278355	98278555	+	724.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9820.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.06	7.29	17.11	10.86	9.0	7.84	4.98	15.22	10.62	7.53	11.56	5.64
Merged-chr4-5692467-3	chr4	5692364	5692564	+	724.600037	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	MMERVK9C_I-int|LTR|ERVK	-31848.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	2.42	4.53	10.27	13.67	17.18	10.03	13.62	18.28	11.21	9.54	14.07	11.59
Merged-chr13-114954698-3	chr13	114954577	114954777	+	724.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22577.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	4.85	2.77	9.7	11.26	14.73	8.78	5.31	12.06	7.67	7.53	8.54	8.14
Merged-chr8-94919640-4	chr8	94919534	94919734	+	724.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1536.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	10.5	7.04	5.7	8.45	2.45	7.21	4.32	4.01	8.26	8.54	7.03	7.83
Merged-chr10-75860938-3	chr10	75860856	75861056	+	724.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	-706.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	10.09	11.07	2.85	0.8	6.14	7.53	4.32	6.59	13.18	7.53	6.03	8.46
Merged-chr13-117222085-2	chr13	117221995	117222195	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	1522.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	12.52	6.04	5.7	11.26	8.59	4.08	5.31	12.98	7.28	7.03	4.02	4.07
Merged-chr1-135095334-1	chr1	135095234	135095434	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	9942.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	1.62	1.51	0.0	1.21	11.86	6.9	1.66	6.67	2.16	1.0	7.54	3.13
Merged-chr2-164960852-2	chr2	164960757	164960957	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355480)	promoter-TSS (NM_001355480)	11.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	9.29	5.79	6.85	6.44	7.77	8.78	3.32	3.53	12.0	6.03	9.04	9.08
Merged-chr18-64991675-3	chr18	64991588	64991788	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	MLT1J2|LTR|ERVL-MaLR	-31839.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.85	5.03	2.28	8.85	8.18	5.33	0.33	3.36	18.29	19.58	7.03	6.27
Merged-chr12-99883941-3	chr12	99883839	99884039	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-497.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	8.88	9.06	4.56	3.62	11.45	10.66	5.65	8.16	7.08	12.55	14.57	8.46
Merged-chr8-64847416-1	chr8	64847316	64847516	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	2508.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.81	2.77	7.42	1.21	0.82	4.08	6.31	7.77	2.16	8.54	4.52	2.82
Merged-chr2-163787916-2	chr2	163787811	163788011	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32923.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	6.86	4.28	9.13	7.24	4.91	13.48	4.65	8.66	10.23	9.04	9.04	6.58
Merged-chr1-24633867-1	chr1	24633767	24633967	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44677.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.04	5.79	10.84	8.04	6.55	9.09	4.98	12.42	5.51	8.03	9.55	3.76
Merged-chr11-97799044-3	chr11	97798949	97799149	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-516.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	6.46	15.85	15.4	12.07	4.91	4.39	9.63	6.7	11.21	3.51	9.04	6.58
Merged-chr7-19328013-2	chr7	19327911	19328111	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17060.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	6.46	4.02	1.71	4.02	9.0	6.27	1.99	6.56	12.78	10.54	7.54	3.76
Merged-chr17-26499247-2	chr17	26499151	26499351	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	9221.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.5	12.32	1.14	1.61	11.86	7.53	5.98	2.47	3.93	7.03	3.52	9.08
Merged-chr19-46505112-2	chr19	46505013	46505213	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	3465.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.27	7.8	10.27	7.24	9.0	9.72	13.29	11.58	7.08	6.53	8.54	4.39
Merged-chr17-48323322-2	chr17	48323234	48323434	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177083, intron 5 of 5)	PB1D11|SINE|Alu	7172.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.65	1.26	1.14	1.61	5.73	6.9	5.65	6.87	8.06	8.03	4.52	4.07
Merged-chr11-106658571-1	chr11	106658471	106658671	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45641.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	3.23	1.26	3.99	0.0	7.36	1.57	6.64	6.56	4.33	5.52	5.53	2.19
Merged-chr10-84411389-2	chr10	84411210	84411410	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	29161.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.44	5.28	1.71	0.0	2.45	2.2	0.66	0.53	4.33	2.51	2.51	2.51
Merged-chr7-127480025-1	chr7	127479925	127480125	+	724.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5196.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	8.48	5.53	5.13	8.85	3.27	4.08	3.65	2.58	6.29	8.54	17.08	12.84
Merged-chr5-102027391-1	chr5	102027291	102027491	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	42530.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.81	2.26	4.56	4.42	6.14	0.63	2.99	9.36	1.57	10.54	5.53	2.51
Merged-chr4-3767086-2	chr4	3766971	3767171	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	52107.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	3.63	2.77	7.42	13.67	5.32	4.08	0.66	7.71	13.57	18.58	12.06	15.66
Merged-chr9-21166932-2	chr9	21166843	21167043	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1229.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	3.63	3.52	3.99	0.0	5.32	3.45	2.99	4.91	10.42	0.0	1.0	10.02
Merged-chr15-81745189-3	chr15	81745090	81745290	+	724.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081016, exon 1 of 23)	5' UTR (NM_001081016, exon 1 of 23)	342.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	5.65	10.82	6.28	14.08	11.05	11.29	5.65	6.08	10.42	5.52	3.52	8.77
Merged-chr4-86683469-3	chr4	86683379	86683579	+	724.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-13420.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	8.48	9.81	2.85	2.82	11.86	10.03	2.33	4.32	13.37	13.56	20.6	10.65
Merged-chrX-38335587-2	chrX	38335489	38335689	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290389, exon 8 of 8)	3' UTR (NM_001290389, exon 8 of 8)	19467.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	6.46	5.03	16.54	7.24	10.23	14.74	5.65	9.95	9.64	13.05	10.05	6.58
Merged-chr3-68666579-2	chr3	68666480	68666680	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24064.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.85	4.78	1.71	10.05	3.27	9.72	6.31	22.15	8.26	8.03	22.11	6.89
Merged-chr6-37316985-2	chr6	37316871	37317071	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16995.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.23	2.26	5.13	8.85	7.36	3.14	8.3	8.36	2.75	2.51	13.57	7.52
Merged-chr5-124444757-2	chr5	124444659	124444859	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-740.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	5.65	6.29	3.42	0.8	18.41	9.72	3.32	10.15	8.46	14.06	11.05	8.77
Merged-chr7-19364086-3	chr7	19363958	19364158	+	724.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	2842.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	6.86	9.81	5.7	13.27	9.41	14.74	2.66	6.48	15.14	17.57	10.55	6.58
Merged-chr15-83432866-1	chr15	83432766	83432966	+	724.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-16.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	2.42	1.26	4.56	3.22	7.36	8.47	4.65	8.16	6.1	8.54	3.52	3.76
Merged-chr3-60582264-1	chr3	60582164	60582364	+	724.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	81085.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.85	2.26	7.99	3.62	1.23	2.82	5.31	10.32	10.82	10.54	6.03	9.08
Merged-chr5-64896777-3	chr5	64896671	64896871	+	724.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35928.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	9.69	8.8	6.85	10.05	9.82	10.03	3.99	10.49	10.82	5.52	17.08	8.77
Merged-chr2-156967323-6	chr2	156967224	156967424	+	724.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355394, intron 1 of 15)	intron (NM_001355394, intron 1 of 15)	24379.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	6.86	7.29	9.13	4.42	9.0	15.68	3.32	4.4	6.88	11.55	8.04	4.39
Merged-chr15-62039192-3	chr15	62039135	62039335	+	724.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	-22.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.46	7.55	7.99	8.04	6.95	10.98	14.95	19.04	13.57	10.54	13.57	11.28
Merged-chr11-103264735-2	chr11	103264638	103264838	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2663.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.63	8.8	6.28	1.21	3.68	6.59	10.3	8.16	5.11	6.53	6.03	5.64
Merged-chr10-8925459-2	chr10	8925346	8925546	+	724.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39376.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.42	0.75	0.0	3.62	5.32	4.08	8.97	6.56	13.18	13.05	23.11	10.34
Merged-chr5-72861897-2	chr5	72861797	72861997	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	6551.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	7.67	6.29	1.14	9.65	9.82	16.31	15.28	16.88	4.33	3.51	3.01	5.33
Merged-chr3-8931161-2	chr3	8931065	8931265	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001025261, exon 8 of 8)	exon (NM_001025261, exon 8 of 8)	-7308.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	7.67	8.55	7.99	6.03	11.86	4.08	5.31	10.4	12.0	3.01	2.01	2.51
Merged-chr6-50075465-2	chr6	50075369	50075569	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34772.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	9.69	9.81	8.56	12.47	6.55	6.59	6.98	12.76	9.24	3.01	3.52	4.7
Merged-chr7-28268080-1	chr7	28267980	28268180	+	724.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	199.0	NM_198425	386655.0	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	1.21	3.27	0.57	2.41	3.27	5.33	4.32	6.45	3.15	1.0	1.51	2.82
Merged-chr2-18689531-3	chr2	18689478	18689678	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9444.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	2.42	4.02	6.28	9.65	6.55	5.64	3.65	5.94	14.36	6.53	16.58	8.46
Merged-chr2-170170394-3	chr2	170170291	170170491	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27716.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.5	14.09	5.7	8.04	10.23	14.11	10.96	10.4	17.11	23.6	19.6	9.08
Merged-chr2-24571076-3	chr2	24570972	24571172	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95473.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	8.48	7.04	11.41	17.7	6.55	11.92	9.63	18.95	10.03	14.56	25.63	6.89
Merged-chr18-39460982-3	chr18	39460876	39461076	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	26269.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	12.92	6.29	9.7	9.65	9.82	5.02	11.29	8.41	11.41	8.54	29.14	15.66
Merged-chr10-93051107-2	chr10	93051015	93051215	+	724.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	30481.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	10.09	4.28	2.28	3.62	4.09	12.54	5.98	8.89	10.23	9.04	11.05	6.58
Merged-chr3-36551906-2	chr3	36551818	36552018	+	724.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-688.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0.81	4.02	2.28	2.01	8.18	14.74	9.3	7.26	9.44	13.56	8.04	5.33
Merged-chr4-59553721-2	chr4	59553637	59553837	+	724.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4373.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	6.06	9.31	7.99	9.25	5.73	8.15	7.31	9.45	5.51	7.53	8.54	6.58
Merged-chr17-45592984-3	chr17	45592872	45593072	+	724.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022880)	promoter-TSS (NM_022880)	-579.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	10.09	5.28	9.7	19.31	6.55	5.64	3.99	8.24	15.74	13.56	15.07	7.21
Merged-chr17-83485476-3	chr17	83485364	83485564	+	724.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28869.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	12.52	6.29	17.11	12.07	2.86	6.27	6.31	5.16	12.0	5.52	11.05	6.27
Merged-chr10-37156480-3	chr10	37156376	37156576	+	724.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17550.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.04	4.02	10.84	11.26	6.95	4.7	6.98	6.17	14.75	11.55	12.06	5.64
Merged-chr8-105453411-3	chr8	105453310	105453510	+	724.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	18012.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	11.31	13.58	2.85	14.88	12.27	11.6	14.62	5.52	8.26	7.53	5.02	3.76
Merged-chr9-113800852-3	chr9	113800737	113800937	+	724.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	7507.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.46	7.04	9.13	12.87	4.5	6.9	11.29	14.86	10.82	9.54	12.56	2.82
Merged-chr19-21439598-1	chr19	21439498	21439698	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	33063.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.62	0.0	0.0	0.0	1.64	1.57	4.98	6.34	0.79	3.51	9.04	0.63
Merged-chr1-184067109-3	chr1	184067020	184067220	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	32739.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	1.21	6.54	10.27	6.84	4.09	3.76	7.97	14.69	10.42	8.03	6.53	7.21
Merged-chr10-20531871-1	chr10	20531771	20531971	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	16457.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.02	6.04	6.85	6.84	4.91	3.14	5.31	7.46	5.11	6.53	13.06	3.76
Merged-chr2-78915126-2	chr2	78915022	78915222	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356395, intron 4 of 5)	intron (NM_001356395, intron 4 of 5)	45444.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.85	8.3	4.56	3.62	8.59	11.92	4.65	6.67	7.87	9.04	10.55	7.83
Merged-chr12-4189240-2	chr12	4189145	4189345	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44720.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	10.5	3.52	1.71	9.65	15.14	10.03	5.65	9.9	7.08	11.05	13.57	5.01
Merged-chr7-99450926-2	chr7	99450818	99451018	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201352, intron 10 of 17)	intron (NM_201352, intron 10 of 17)	-15086.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	10.09	3.52	7.99	7.24	4.5	7.84	6.64	7.23	11.01	13.05	11.05	4.07
Merged-chr2-84094983-1	chr2	84094883	84095083	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-153757.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	3.23	3.02	4.56	8.85	4.09	5.02	2.99	7.65	4.52	2.51	3.01	1.57
Merged-chr11-105467400-1	chr11	105467300	105467500	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10665.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.85	4.53	3.99	9.65	2.05	5.96	8.3	6.5	6.1	7.03	4.52	2.82
Merged-chr5-136135613-1	chr5	136135513	136135713	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	461.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	11.31	10.31	10.84	7.64	3.27	4.7	9.63	8.3	5.31	8.54	6.53	6.27
Merged-chr18-76151180-1	chr18	76151080	76151280	+	724.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19372.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	2.02	2.26	1.14	6.84	0.82	1.88	3.65	1.51	7.08	13.05	10.55	14.41
Merged-chr16-38404404-1	chr16	38404304	38404504	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134102, intron 8 of 10)	MIRc|SINE|MIR	28741.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.23	1.76	3.42	3.22	0.82	6.9	2.66	6.56	7.28	4.52	5.53	4.39
Merged-chr2-167380591-1	chr2	167380491	167380691	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	-31413.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	2.42	3.02	0.0	0.8	2.05	7.84	1.33	3.98	1.77	0.5	2.51	0.94
Merged-chr10-71326999-1	chr10	71326899	71327099	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16254.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	5.65	4.53	0.57	0.0	3.68	1.57	5.31	5.83	6.49	7.53	6.03	0.63
Merged-chrX-94616765-2	chrX	94616660	94616860	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7512.0	NR_153318	102640328.0	Mm.250777	NR_153318		LOC102640328	-	uncharacterized LOC102640328	ncRNA	9.69	4.02	0.0	14.48	4.09	2.82	11.63	13.68	0.2	0.0	0.0	0.63
Merged-chr12-91816215-1	chr12	91816115	91816315	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039089, intron 15 of 20)	intron (NM_001039089, intron 15 of 20)	-29779.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.23	2.52	3.42	3.22	5.73	9.09	7.31	6.2	6.88	3.01	7.03	3.45
Merged-chr8-68233134-1	chr8	68233034	68233234	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43394.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.23	3.77	1.71	6.03	5.32	1.57	5.98	5.38	2.56	2.51	3.52	4.39
Merged-chr4-124663200-2	chr4	124663103	124663303	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5557.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	3.63	3.77	11.41	4.83	2.45	5.33	5.98	5.24	12.39	8.03	16.58	4.39
Merged-chr6-127542241-1	chr6	127542141	127542341	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35734.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.23	4.53	0.0	5.23	4.09	4.39	6.31	7.65	6.1	3.01	4.02	5.01
Merged-chr10-99986937-1	chr10	99986837	99987037	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28884.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	7.67	4.53	4.56	2.82	5.32	5.33	5.98	12.17	6.1	2.01	13.57	5.33
Merged-chrX-106030254-2	chrX	106030165	106030365	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	3041.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	3.23	9.31	11.98	3.22	21.68	15.37	15.28	7.93	5.9	9.54	7.03	6.58
Merged-chr3-22087934-1	chr3	22087834	22088034	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	11282.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.83	4.53	1.14	4.83	5.73	1.57	6.98	9.42	6.49	13.05	6.03	6.27
Merged-chr7-66287746-1	chr7	66287646	66287846	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 19 of 33)	intron (NM_146191, intron 19 of 33)	93978.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	6.29	5.7	6.84	0.0	1.88	5.31	7.85	1.77	0.0	2.01	1.57
Merged-chr5-136087562-2	chr5	136087480	136087680	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	3664.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	4.85	10.82	1.14	2.82	7.77	9.09	3.65	3.95	15.34	6.53	4.02	8.14
Merged-chr5-50058444-2	chr5	50058355	50058555	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133911, intron 1 of 18)	CpG	541.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.81	7.29	6.28	2.82	9.41	5.96	12.29	9.84	2.16	4.52	4.02	5.95
Merged-chr4-103285160-2	chr4	103285058	103285258	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027612, intron 1 of 8)	intron (NM_027612, intron 1 of 8)	5705.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	13.73	5.53	9.13	12.87	8.59	7.21	4.65	10.12	2.56	1.51	2.51	1.25
Merged-chr9-100711130-2	chr9	100711026	100711226	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009282, intron 2 of 33)	intron (NM_009282, intron 2 of 33)	67678.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	10.09	6.79	9.13	8.45	5.73	10.66	9.63	22.37	7.28	3.01	8.04	5.33
Merged-chr5-72177114-1	chr5	72177014	72177214	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8925.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	3.23	4.28	6.85	1.21	2.86	6.9	2.33	7.04	0.59	4.52	3.52	0.31
Merged-chr2-27702601-1	chr2	27702501	27702701	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-6691.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.85	3.77	2.28	6.84	4.5	8.47	5.65	6.64	6.1	8.03	3.52	3.13
Merged-chr5-146233047-1	chr5	146232947	146233147	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	1797.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	5.65	1.51	4.56	4.02	3.27	0.63	5.98	5.86	2.75	8.54	4.02	3.13
Merged-chr4-131913412-1	chr4	131913312	131913512	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_102394, exon 3 of 3)	non-coding (NR_102394, exon 3 of 3)	6617.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	1.26	1.14	0.8	4.5	3.45	4.98	9.22	0.79	1.51	0.0	1.25
Merged-chr11-103849659-1	chr11	103849559	103849759	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008740, intron 15 of 20)	RMER15|LTR|ERVL	75484.0	NM_009521	22415.0	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	5.65	6.79	15.4	3.62	0.0	0.0	0.0	0.76	1.38	5.02	0.5	0.94
Merged-chr16-18343259-1	chr16	18343159	18343359	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	651.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	4.04	4.02	7.99	1.21	4.09	2.82	4.98	4.99	4.33	2.01	4.02	3.76
Merged-chr12-41852169-1	chr12	41852069	41852269	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-366112.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.02	1.26	5.13	2.01	2.05	0.63	4.98	5.83	5.9	2.51	3.01	1.25
Merged-chr11-76579110-1	chr11	76579010	76579210	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1371.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.46	7.8	8.56	6.44	9.0	4.08	5.98	7.18	0.0	0.0	2.51	2.51
Merged-chr4-133968667-1	chr4	133968567	133968767	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-676.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	5.25	3.77	0.57	4.02	10.23	6.59	6.31	4.15	5.9	6.53	4.52	5.64
Merged-chr11-18871845-1	chr11	18871745	18871945	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	147124.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	2.01	2.85	1.61	3.68	5.64	8.97	4.18	3.74	1.51	1.0	2.51
Merged-chr17-29010092-1	chr17	29009992	29010192	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-2097.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	4.44	1.51	2.28	1.61	2.86	0.94	6.98	6.67	3.15	2.51	5.53	5.95
Merged-chr19-34334518-1	chr19	34334418	34334618	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43859.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	7.67	4.53	0.0	4.83	3.27	9.41	2.33	8.86	3.34	9.04	13.57	4.39
Merged-chr8-79391656-1	chr8	79391556	79391756	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	7812.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.44	3.52	2.85	5.23	8.18	4.39	8.3	9.56	1.97	5.52	0.5	5.64
Merged-chr15-27925523-1	chr15	27925423	27925623	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100325.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	2.02	6.29	1.14	2.41	8.18	13.48	1.99	5.97	2.95	9.54	4.02	4.39
Merged-chr2-34963242-4	chr2	34963237	34963437	+	723.974976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1565.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	3.23	3.52	3.42	1.61	3.68	6.27	2.33	3.81	4.72	6.03	7.03	4.07
Merged-chr4-59352172-3	chr4	59352057	59352257	+	723.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86476.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	12.11	6.29	12.55	9.25	12.68	8.47	6.98	15.39	9.24	8.54	18.09	5.95
Merged-chr13-107844600-3	chr13	107844500	107844700	+	723.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	45464.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	6.06	6.29	8.56	7.64	14.73	6.27	9.3	11.16	15.93	8.03	10.55	8.46
Merged-chr14-25790820-2	chr14	25790723	25790923	+	723.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21967.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	8.08	7.8	6.85	9.25	9.41	11.29	15.94	13.99	13.57	6.53	7.03	5.64
Merged-chr18-50066206-3	chr18	50066100	50066300	+	723.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-12538.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	11.71	7.55	7.42	11.66	1.64	6.27	3.99	4.26	17.9	16.57	17.08	5.01
Merged-chr9-118926256-4	chr9	118926132	118926332	+	723.883301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133710)	promoter-TSS (NM_133710)	-304.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	9.29	8.55	4.56	6.84	8.59	7.53	9.3	3.2	11.01	6.03	5.02	10.34
Merged-chr6-88057043-2	chr6	88056944	88057144	+	723.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11774.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	6.06	8.55	1.14	5.63	7.36	12.23	8.97	8.69	3.15	2.01	4.02	2.19
Merged-chr2-170121438-2	chr2	170121334	170121534	+	723.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	9786.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.09	8.05	13.69	5.63	8.59	6.9	6.64	9.34	5.31	5.02	7.03	5.33
Merged-chr12-57244340-2	chr12	57244243	57244443	+	723.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	13918.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	9.69	7.55	1.71	8.85	13.09	6.27	9.3	10.46	5.31	3.51	10.55	1.88
Merged-chr11-119042049-2	chr11	119041958	119042158	+	723.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-2901	-1145.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	19.79	27.42	9.7	10.86	9.41	18.5	4.32	3.2	19.28	16.57	13.57	6.58
Merged-chr7-118646482-2	chr7	118646388	118646588	+	723.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028930, intron 5 of 17)	ORR1G|LTR|ERVL-MaLR	12752.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	2.42	1.01	3.42	3.62	7.36	6.27	7.64	4.35	9.83	6.53	23.62	15.35
Merged-chr9-114770452-3	chr9	114770336	114770536	+	723.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	11557.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.65	7.55	26.24	8.04	20.86	14.11	12.95	14.55	9.05	10.54	12.56	14.1
Merged-chr10-127616996-4	chr10	127616776	127616976	+	723.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	4272.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.44	2.01	11.41	3.62	5.73	5.64	3.65	5.78	9.44	4.52	8.54	4.39
Merged-chr4-148997632-2	chr4	148997545	148997745	+	723.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 3 of 8)	L2a|LINE|L2	-45323.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	6.86	10.06	3.42	10.05	5.73	8.47	4.98	8.27	4.52	3.51	4.52	1.88
Merged-chr17-26616912-1	chr17	26616812	26617012	+	723.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 3 of 9)	intron (NM_026170, intron 3 of 9)	55400.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.65	1.51	8.56	1.21	9.0	4.08	9.97	5.8	8.46	2.51	3.01	8.46
Merged-chr10-10132771-3	chr10	10132676	10132876	+	723.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-231736.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.04	6.54	10.27	16.49	31.91	13.48	25.24	38.41	11.01	10.04	18.09	4.7
Merged-chr18-56759339-3	chr18	56759250	56759450	+	723.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51537.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	8.08	6.79	9.7	5.23	6.55	15.99	6.64	8.41	7.87	8.54	22.11	11.9
Merged-chr6-142698165-3	chr6	142698063	142698263	+	723.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001044720, intron 2 of 39)	intron (NM_001044720, intron 2 of 39)	4111.0	NM_021041	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	8.08	8.55	10.84	9.25	7.36	3.45	15.94	15.79	13.37	10.04	15.58	13.47
Merged-chr14-51483242-1	chr14	51483142	51483342	+	723.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	31280.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	0.0	1.01	7.42	0.4	5.32	2.51	5.98	2.24	14.95	7.03	11.05	9.08
Merged-chr6-3620659-1	chr6	3620559	3620759	+	723.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100726.0	NR_030612	100124468.0		NR_030612	ENSMUSG00000076357	Mir653	Mirn653|mir-653|mmu-mir-653	microRNA 653	ncRNA	9.69	1.76	3.99	6.03	11.45	3.45	8.64	7.68	10.62	5.52	5.02	3.76
Merged-chr1-64633322-1	chr1	64633222	64633422	+	723.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16154.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.04	2.26	0.57	2.82	9.0	7.84	5.65	10.46	3.54	4.52	8.04	6.58
Merged-chr7-4145983-2	chr7	4145892	4146092	+	723.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	3880.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	6.86	3.02	2.85	1.61	1.64	9.41	1.99	7.46	11.8	11.05	25.12	12.53
Merged-chr10-98951628-2	chr10	98951550	98951750	+	723.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	36498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.48	4.53	6.85	6.03	6.14	6.59	5.98	11.89	6.88	5.52	8.04	2.51
Merged-chr16-33832849-2	chr16	33832784	33832984	+	723.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	3219.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.85	2.26	3.99	5.63	9.0	7.84	7.31	5.19	4.92	9.54	10.05	4.7
Merged-chr17-12999281-2	chr17	12999171	12999371	+	723.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6732.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	3.23	6.54	14.26	4.02	3.68	4.08	3.99	4.77	15.54	18.58	15.07	9.08
Merged-chr5-43845231-2	chr5	43845110	43845310	+	723.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23599.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	8.08	6.79	9.13	10.46	9.41	9.72	10.3	14.55	5.7	6.03	16.58	2.51
Merged-chr15-76350197-1	chr15	76350097	76350297	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025340, exon 2 of 9)	exon (NM_025340, exon 2 of 9)	913.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	4.85	5.03	5.13	4.83	3.27	6.59	4.32	7.07	5.7	7.53	8.54	5.95
Merged-chr4-136179616-1	chr4	136179516	136179716	+	723.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177733, intron 2 of 6)	intron (NM_177733, intron 2 of 6)	-1166.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.02	7.55	7.42	4.83	0.0	0.0	0.33	0.0	17.11	12.05	11.05	6.27
Merged-chrX-48523735-3	chrX	48523625	48523825	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	4440.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	10.09	12.83	23.39	11.26	12.27	10.66	8.3	13.07	6.69	9.54	12.56	4.7
Merged-chr1-194977563-2	chr1	194977489	194977689	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-630.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.04	2.77	2.85	3.22	8.59	10.98	5.65	6.11	4.13	10.04	5.02	7.83
Merged-chr18-54979325-1	chr18	54979225	54979425	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	10855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.46	2.26	2.28	4.42	4.5	4.7	4.65	4.74	6.69	8.54	3.52	6.27
Merged-chr4-126741645-2	chr4	126741532	126741732	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5363.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	5.25	6.54	6.28	2.01	5.73	10.98	4.98	6.9	10.23	13.05	15.58	7.21
Merged-chr7-116490713-2	chr7	116490622	116490822	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-13647.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	8.08	6.04	7.42	4.83	5.73	4.7	7.97	9.22	9.24	4.02	14.57	8.77
Merged-chr11-114896700-1	chr11	114896600	114896800	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	6659.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	1.21	1.51	0.0	6.44	18.0	11.6	4.98	6.42	7.47	6.03	2.51	5.64
Merged-chr4-152158333-3	chr4	152158210	152158410	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008236)	promoter-TSS (NM_008236)	-557.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	4.85	3.52	2.28	4.42	2.86	1.25	4.65	4.12	4.33	9.54	3.52	9.08
Merged-chr7-97172364-3	chr7	97172264	97172464	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90613.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	11.71	8.3	3.42	24.13	8.18	8.78	9.3	23.07	9.44	8.54	26.63	9.08
Merged-chr7-97822070-2	chr7	97821967	97822167	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	-20872.0	NM_001357363	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	12.52	4.53	8.56	13.67	2.05	5.02	2.99	5.47	5.9	0.0	3.01	4.39
Merged-chr14-70555823-2	chr14	70555691	70555891	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021877, intron 2 of 19)	intron (NM_021877, intron 2 of 19)	1735.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	12.11	3.27	8.56	6.44	3.27	7.21	6.31	8.44	0.98	0.0	2.51	1.57
Merged-chr17-64666121-1	chr17	64666021	64666221	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 6 of 21)	intron (NM_008549, intron 6 of 21)	64472.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.85	3.02	9.7	3.22	5.73	7.53	1.99	8.02	5.9	2.51	13.57	2.82
Merged-chr4-33338185-1	chr4	33338085	33338285	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305273, intron 7 of 15)	intron (NM_001305273, intron 7 of 15)	27874.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.63	2.01	0.0	1.61	8.18	17.87	9.3	6.79	6.69	9.54	4.02	4.39
Merged-chr7-25435631-1	chr7	25435531	25435731	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-22745.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	4.44	4.28	7.99	6.44	2.05	5.02	1.66	5.55	4.33	4.02	8.54	3.13
Merged-chr2-38534061-2	chr2	38533949	38534149	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	22173.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.06	8.05	2.28	9.25	2.45	15.05	8.64	8.78	3.74	5.02	1.0	2.82
Merged-chr5-135780632-2	chr5	135780546	135780746	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1997.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	10.5	2.77	3.42	1.61	11.45	2.2	6.31	9.11	7.28	9.04	9.04	7.83
Merged-chr13-115150809-2	chr13	115150699	115150899	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48835.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	1.62	2.01	2.28	4.02	8.18	3.14	6.98	10.57	8.06	10.54	10.05	6.89
Merged-chr15-13027693-1	chr15	13027593	13027793	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	145982.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.85	0.75	1.14	0.8	1.64	5.64	7.31	7.01	0.79	2.51	8.54	2.82
Merged-chr11-46269122-2	chr11	46268997	46269197	+	723.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 11 of 30)	intron (NM_001252459, intron 11 of 30)	33540.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	14.13	5.79	9.13	6.44	6.55	10.35	3.99	8.13	14.36	11.05	12.06	9.08
Merged-chr17-12892292-3	chr17	12892205	12892405	+	723.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034866, intron 14 of 18)	intron (NM_001034866, intron 14 of 18)	16271.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	7.67	7.29	1.14	7.24	11.45	7.53	17.27	17.52	11.01	8.54	10.05	7.21
Merged-chr10-75883370-3	chr10	75883255	75883455	+	723.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10043.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	5.25	5.53	13.12	6.84	6.55	13.48	1.66	8.69	12.59	7.53	8.54	7.83
Merged-chr9-64100662-3	chr9	64100553	64100753	+	723.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16494.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	6.86	6.29	9.13	7.24	12.68	9.41	5.65	7.63	14.16	9.04	16.58	4.7
Merged-chr11-74523762-3	chr11	74523675	74523875	+	723.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	66383.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	8.08	7.04	7.99	7.64	3.68	7.84	3.65	6.48	12.39	8.03	14.07	5.64
Merged-chr12-102419077-2	chr12	102418915	102419115	+	723.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	20798.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.63	3.02	18.25	6.03	9.0	1.25	4.98	5.16	3.93	2.01	5.02	1.57
Merged-chr19-6400472-2	chr19	6400388	6400588	+	723.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-95.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	6.06	5.28	4.56	5.23	7.77	5.64	10.63	6.7	9.64	7.53	10.55	10.34
Merged-chr17-28950957-2	chr17	28950852	28951052	+	723.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1484.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	8.08	7.04	14.26	6.44	5.73	9.41	7.31	12.2	9.44	10.54	8.54	4.7
Merged-chr13-45911366-2	chr13	45911264	45911464	+	723.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	53627.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	9.29	3.77	3.42	12.07	17.59	10.66	12.95	7.07	6.29	1.0	6.03	2.82
Merged-chr6-50681869-1	chr6	50681769	50681969	+	723.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27476.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.81	3.02	8.56	0.8	5.32	3.14	5.98	7.09	3.93	2.01	1.51	1.88
Merged-chr15-51730991-3	chr15	51730919	51731119	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134442.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	8.48	6.79	5.7	4.83	11.05	5.96	2.99	4.18	13.18	22.59	7.54	3.13
Merged-chr15-93298319-3	chr15	93298236	93298436	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024189, intron 2 of 3)	intron (NM_024189, intron 2 of 3)	-23157.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	6.46	5.03	5.7	9.65	6.55	8.78	6.98	9.5	11.01	8.54	7.03	10.65
Merged-chr4-130308680-1	chr4	130308580	130308780	+	723.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010174)	promoter-TSS (NM_010174)	-98.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	9.69	6.79	4.56	6.84	4.5	10.66	6.64	5.61	4.72	9.54	7.03	6.58
Merged-chr6-97788743-3	chr6	97788642	97788842	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-18316.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.27	9.56	6.28	9.65	13.91	8.78	10.96	10.51	6.88	8.03	9.55	8.14
Merged-chr7-24385064-3	chr7	24384964	24385164	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008433, exon 9 of 9)	3' UTR (NM_008433, exon 9 of 9)	-14564.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.06	7.8	2.28	4.02	4.09	5.33	4.65	6.34	10.82	4.52	11.56	5.64
Merged-chr15-83452119-1	chr15	83452019	83452219	+	723.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-4239.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	7.67	2.52	4.56	8.85	7.36	6.59	6.64	6.53	6.1	5.02	4.02	3.76
Merged-chr15-68392114-3	chr15	68392016	68392216	+	723.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50827.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	6.46	8.05	12.55	8.85	5.73	5.02	1.66	6.17	14.16	8.03	26.13	10.02
Merged-chr5-101966938-1	chr5	101966838	101967038	+	723.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102983.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.02	0.5	8.56	2.41	9.0	12.86	6.64	6.06	1.38	5.52	4.02	4.7
Merged-chr14-21854720-2	chr14	21854618	21854818	+	723.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5808.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	8.48	7.29	12.55	5.63	6.14	5.33	10.3	18.53	5.51	6.03	9.55	6.58
Merged-chr5-69557708-4	chr5	69557618	69557818	+	723.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310631, intron 1 of 14)	intron (NM_001310631, intron 1 of 14)	794.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	7.27	3.02	3.99	4.83	4.5	6.9	7.64	6.93	6.29	5.52	6.03	6.58
Merged-chr9-14187979-2	chr9	14187867	14188067	+	723.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88334.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	2.83	3.27	9.13	9.25	1.23	3.14	4.65	2.55	6.29	0.5	6.03	3.13
Merged-chr9-21297347-3	chr9	21297244	21297444	+	723.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110300, intron 9 of 10)	MTB_Mm|LTR|ERVL-MaLR	-6135.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	8.08	5.79	25.67	9.65	16.36	11.6	5.65	10.96	9.44	10.54	28.14	9.71
Merged-chr4-58504813-3	chr4	58504724	58504924	+	723.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-5421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.23	7.29	6.85	8.45	6.95	10.03	13.95	7.63	21.44	8.54	16.08	11.28
Merged-chr11-55148974-3	chr11	55148818	55149018	+	723.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172258, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	2788.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	7.27	8.8	5.13	1.21	3.27	5.64	5.65	4.6	7.47	6.03	4.02	4.07
Merged-chr1-21101390-3	chr1	21101304	21101504	+	723.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22179.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.65	7.29	5.7	7.24	14.32	10.03	3.32	10.54	12.98	4.52	10.05	3.76
Merged-chr5-75157241-3	chr5	75157116	75157316	+	723.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083316, intron 1 of 22)	intron (NM_001083316, intron 1 of 22)	1050.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	12.92	4.78	9.13	4.83	11.05	9.41	6.98	9.84	8.26	7.03	13.06	8.46
Merged-chr1-170907965-3	chr1	170907863	170908063	+	723.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029984, exon 5 of 6)	exon (NM_001029984, exon 5 of 6)	4978.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	2.42	11.32	4.56	10.05	8.59	9.72	14.95	9.56	8.85	2.51	10.55	5.33
Merged-chr16-14367009-2	chr16	14366832	14367032	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	ID2|SINE|ID	5374.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.04	4.28	0.57	0.8	4.5	5.64	6.64	4.93	1.57	4.52	3.01	5.01
Merged-chr15-83148515-2	chr15	83148401	83148601	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 1 of 7)	PB1|SINE|Alu	877.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	5.65	6.29	4.56	6.44	6.14	11.29	8.3	7.12	13.96	8.54	10.55	7.83
Merged-chr2-154593250-2	chr2	154593136	154593336	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	10437.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.0	2.01	0.0	0.0	9.0	20.07	6.31	5.72	14.95	13.05	23.62	9.08
Merged-chr8-79323341-2	chr8	79323226	79323426	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28248.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	6.46	5.28	1.71	6.44	6.95	2.82	10.3	13.07	4.33	9.54	10.55	10.65
Merged-chr14-118925069-2	chr14	118924992	118925192	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360412)	promoter-TSS (NM_001360412)	378.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	4.85	10.56	5.13	4.83	6.14	6.59	11.29	12.22	9.64	5.02	11.05	7.21
Merged-chr4-133139128-2	chr4	133139032	133139232	+	723.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	MER20|DNA|hAT-Charlie	8499.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.08	8.8	9.7	7.24	9.82	10.98	4.98	4.77	3.34	3.01	6.03	5.01
Merged-chr13-54575168-3	chr13	54575035	54575235	+	723.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019968, exon 1 of 4)	exon (NM_019968, exon 1 of 4)	122.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	13.33	12.32	5.13	11.66	6.14	9.09	9.3	8.27	9.24	10.54	12.56	16.29
Merged-chr5-24780391-3	chr5	24780292	24780492	+	723.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22549.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	7.67	7.29	18.25	6.03	6.55	6.9	3.32	7.46	17.31	20.59	16.08	4.07
Merged-chr2-21054677-2	chr2	21054553	21054753	+	723.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85779.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	2.42	3.27	2.85	3.62	4.09	3.45	2.66	8.86	8.06	8.03	13.06	5.95
Merged-chr11-106498142-3	chr11	106498059	106498259	+	723.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2832.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	11.31	8.55	6.28	7.24	9.41	21.64	6.98	4.91	22.23	33.64	15.07	12.53
Merged-chr12-39510137-2	chr12	39510032	39510232	+	723.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	527244.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	6.46	4.02	6.85	2.82	6.55	18.19	4.98	13.26	9.83	12.55	16.58	5.95
Merged-chr3-135607299-2	chr3	135607182	135607382	+	723.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 13 of 24)	intron (NM_008689, intron 13 of 24)	84265.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.04	2.77	7.99	6.84	5.73	10.35	10.96	4.77	10.42	10.54	12.56	7.21
Merged-chr15-7878257-3	chr15	7878139	7878339	+	723.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	62689.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	4.04	8.05	3.99	12.07	15.14	6.9	21.59	23.44	8.85	8.03	9.04	3.76
Merged-chr5-88519449-3	chr5	88519347	88519547	+	723.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_152839)	TTS (NM_152839)	8450.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	9.69	6.29	5.7	8.04	6.95	7.53	6.98	10.74	19.47	14.06	14.07	5.64
Merged-chr4-129082922-3	chr4	129082849	129083049	+	723.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 8 of 8)	intron (NM_029219, intron 8 of 8)	-22581.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	7.27	7.55	2.28	2.41	6.14	11.92	4.65	8.16	19.28	15.06	27.13	6.58
Merged-chr18-34080684-1	chr18	34080584	34080784	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-73478.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	3.63	2.52	2.85	2.41	2.45	3.45	3.65	5.24	1.57	7.03	1.51	4.39
Merged-chr3-96333904-1	chr3	96333804	96334004	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11383.0	NR_152105	100504145.0	Mm.100443	NR_152105	ENSMUSG00000097851	Platr30	Gm17580	pluripotency associated transcript 30	ncRNA	8.08	2.52	3.99	4.42	2.45	3.76	1.99	3.42	0.2	3.51	2.01	2.19
Merged-chr13-70659891-3	chr13	70659787	70659987	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22253.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	8.08	9.06	8.56	5.63	4.09	5.33	9.97	10.01	6.1	13.56	11.56	7.83
Merged-chr3-41377074-2	chr3	41376976	41377176	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116123.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	8.48	5.79	2.85	11.66	8.18	5.33	12.62	12.36	2.56	3.01	2.51	2.82
Merged-chr2-113573385-1	chr2	113573285	113573485	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 6 of 16)	intron (NM_001285459, intron 6 of 16)	-111705.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.42	3.02	2.85	3.22	2.86	6.9	3.32	7.18	5.51	5.02	2.01	6.27
Merged-chr18-62111106-1	chr18	62111006	62111206	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68875.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	2.42	6.54	3.42	5.63	5.73	2.2	1.99	5.13	6.29	7.03	4.02	2.19
Merged-chr13-111984152-1	chr13	111984052	111984252	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	116216.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	9.69	6.79	6.28	12.07	4.91	1.25	1.66	2.24	1.77	1.0	3.01	1.88
Merged-chr14-33190909-2	chr14	33190811	33191011	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5845.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	7.27	5.28	10.27	10.86	11.05	3.14	7.31	8.41	9.64	4.02	15.07	6.58
Merged-chr15-89178485-1	chr15	89178385	89178585	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2303.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	8.08	5.28	1.71	4.02	7.36	9.72	7.64	9.87	7.67	13.56	5.02	9.4
Merged-chr7-110432435-1	chr7	110432335	110432535	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 13 of 40)	intron (NM_177324, intron 13 of 40)	182485.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	4.44	3.27	1.14	4.02	3.27	7.53	2.66	5.83	12.0	6.03	6.53	3.76
Merged-chr19-4741723-1	chr19	4741623	4741823	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021287, intron 19 of 36)	LTR16C|LTR|ERVL	-14802.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	2.42	1.51	4.56	3.62	3.27	5.33	6.98	4.71	5.11	4.02	3.52	3.76
Merged-chr6-148682117-1	chr6	148682017	148682217	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4117.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	6.46	5.53	9.13	6.84	1.23	5.96	1.33	7.4	2.36	6.53	8.54	2.51
Merged-chr6-83162480-1	chr6	83162380	83162580	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-3444.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	6.06	4.53	2.28	5.63	6.95	4.08	2.66	6.14	4.52	3.01	7.54	1.88
Merged-chrX-96148377-1	chrX	96148277	96148477	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 2 of 12)	intron (NM_010833, intron 2 of 12)	52332.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	4.85	1.01	1.14	4.02	4.5	3.14	8.3	5.61	4.72	3.01	7.03	3.13
Merged-chr19-16123297-1	chr19	16123197	16123397	+	723.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-9534.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.04	3.77	1.14	4.83	1.64	0.31	1.99	0.11	10.23	10.54	8.54	7.21
Merged-chr9-106343542-1	chr9	106343442	106343642	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-25090.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.04	2.26	4.56	1.21	5.32	2.2	2.99	5.89	0.79	1.0	0.0	2.82
Merged-chr3-153565726-1	chr3	153565626	153565826	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	159407.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	3.23	3.52	2.85	3.62	4.91	2.51	6.31	5.8	3.54	1.0	12.06	4.07
Merged-chr6-146913217-1	chr6	146913117	146913317	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	24723.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	2.83	1.51	0.0	1.61	5.32	5.33	2.66	5.38	9.83	5.52	9.04	8.46
Merged-chr4-154837336-1	chr4	154837236	154837436	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18864.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	9.29	10.06	4.56	6.84	5.32	7.53	2.33	1.91	1.77	2.51	2.51	0.94
Merged-chr4-106827954-1	chr4	106827854	106828054	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-22947.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	3.23	7.8	2.28	6.44	7.77	2.51	2.66	5.61	5.11	2.01	7.54	5.64
Merged-chr18-39855891-1	chr18	39855791	39855991	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82394.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.44	7.04	2.28	7.64	7.36	4.08	6.64	13.6	9.64	5.52	13.06	5.95
Merged-chr10-128913432-3	chr10	128913337	128913537	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001282966)	TTS (NM_001282966)	3571.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	11.71	12.07	10.84	11.26	6.95	8.47	5.31	11.21	12.0	13.05	12.06	7.21
Merged-chr15-86184277-2	chr15	86184205	86184405	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-1423.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	10.5	1.76	0.0	6.03	8.59	5.02	4.98	9.81	8.65	7.53	5.02	6.89
Merged-chr4-105353190-1	chr4	105353090	105353290	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	195843.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.21	1.01	1.14	4.83	3.68	5.33	6.64	8.21	2.75	5.02	7.54	4.07
Merged-chr3-37802877-2	chr3	37802775	37802975	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78515.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	1.62	0.5	10.27	10.46	6.95	5.64	11.63	16.07	5.31	1.51	10.05	11.59
Merged-chr12-73586271-1	chr12	73586171	73586371	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	1475.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	2.42	0.5	12.55	3.62	0.82	1.57	1.99	1.23	2.36	0.5	4.02	0.94
Merged-chrX-107032037-1	chrX	107031937	107032137	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56455.0	NM_001357810	78826.0	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	3.63	1.51	3.42	2.41	4.5	10.03	8.97	3.39	1.97	2.01	8.04	0.31
Merged-chr4-41712672-1	chr4	41712572	41712772	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027278, exon 2 of 2)	exon (NM_027278, exon 2 of 2)	845.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	3.23	7.8	2.28	4.83	2.45	0.94	4.98	5.55	5.11	0.5	11.56	4.39
Merged-chr7-123293196-2	chr7	123293105	123293305	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	76710.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.04	2.26	8.56	6.03	8.59	7.84	8.97	5.13	4.13	14.56	17.08	5.33
Merged-chr13-28557401-1	chr13	28557301	28557501	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	153472.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	2.83	0.5	1.14	4.83	3.27	10.03	3.65	5.07	1.97	2.01	8.54	1.57
Merged-chr10-118041644-1	chr10	118041544	118041744	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-100143.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.62	1.51	2.28	2.41	5.32	2.82	5.65	5.47	0.39	0.0	0.5	0.0
Merged-chr7-64223400-2	chr7	64223306	64223506	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039104, intron 13 of 26)	intron (NM_001039104, intron 13 of 26)	17600.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	2.02	2.77	2.85	4.42	7.77	5.02	4.65	13.88	7.47	3.51	20.6	6.89
Merged-chr15-64242114-1	chr15	64242014	64242214	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	70559.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.06	3.02	6.85	4.83	10.23	4.08	2.99	6.0	6.49	7.03	6.53	5.95
Merged-chr1-43465158-2	chr1	43465096	43465296	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	19445.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.85	1.51	3.42	0.8	8.59	5.64	2.33	9.7	9.24	7.53	13.57	4.7
Merged-chr7-141436686-1	chr7	141436586	141436786	+	723.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360724, intron 1 of 9)	intron (NM_001360724, intron 1 of 9)	1188.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	2.02	4.28	5.7	4.83	2.45	7.53	0.66	1.51	10.03	5.02	12.06	7.21
Merged-chr10-60375700-1	chr10	60375600	60375800	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-24026.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.81	3.77	0.0	5.23	4.5	3.76	5.98	6.48	2.16	6.03	3.52	0.63
Merged-chr7-132308024-2	chr7	132307936	132308136	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	MER34A1|LTR|ERV1	-7628.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	10.9	6.79	2.85	9.65	5.32	3.14	7.64	8.5	5.9	7.53	6.03	5.64
Merged-chr5-101830089-1	chr5	101829989	101830189	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64959.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.04	7.55	8.56	0.0	3.68	6.59	1.33	0.81	3.93	6.53	3.52	5.33
Merged-chr11-116220654-1	chr11	116220554	116220754	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025276)	TTS (NM_025276)	4652.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	6.86	7.04	7.99	4.02	12.68	8.15	2.66	6.42	9.24	1.51	4.52	4.07
Merged-chr16-30039362-3	chr16	30039267	30039467	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045878, exon 1 of 4)	non-coding (NR_045878, exon 1 of 4)	112.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	7.27	21.13	7.99	10.05	17.18	7.53	11.96	11.47	14.55	9.54	10.05	8.14
Merged-chrX-169263591-1	chrX	169263491	169263691	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_109847, intron 8 of 14)	L1MC4a|LINE|L1	56781.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	4.04	2.26	9.7	6.44	8.59	3.45	4.32	6.06	3.54	3.01	2.01	2.19
Merged-chr5-65038445-1	chr5	65038345	65038545	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026667, intron 12 of 13)	MIR|SINE|MIR	68127.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.81	2.77	4.56	0.0	4.09	6.27	5.65	6.79	6.1	9.54	7.54	2.51
Merged-chr6-38810635-1	chr6	38810535	38810735	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	26676.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.44	2.77	0.0	2.82	6.14	0.63	5.31	4.85	3.15	0.5	5.02	2.82
Merged-chr4-108768710-1	chr4	108768610	108768810	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	LTR16B1|LTR|ERVL	12378.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	2.42	2.52	2.28	1.61	1.64	3.14	2.66	4.79	1.77	1.0	0.5	0.94
Merged-chr11-72041950-3	chr11	72041839	72042039	+	722.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-563.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	12.11	6.29	9.13	8.45	9.0	10.03	2.66	6.0	11.21	8.54	15.07	7.21
Merged-chr4-114982756-3	chr4	114982654	114982854	+	722.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	B3|SINE|B2	4474.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	12.92	6.29	15.4	10.05	13.91	5.02	5.31	7.43	15.93	9.04	19.09	8.46
Merged-chr16-16829367-3	chr16	16829286	16829486	+	722.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015773)	promoter-TSS (NM_015773)	-23.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	4.44	3.27	3.42	5.63	6.95	13.48	6.98	9.36	16.33	16.07	11.56	7.83
Merged-chr5-149006262-2	chr5	149006129	149006329	+	722.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-733.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	2.83	2.52	6.28	1.61	6.55	2.2	4.32	6.67	9.05	6.03	6.53	13.47
Merged-chr13-95044317-2	chr13	95044220	95044420	+	722.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172263, intron 12 of 19)	intron (NM_172263, intron 12 of 19)	67976.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	10.5	4.28	12.55	7.64	6.55	13.17	5.31	9.81	3.93	2.51	7.54	3.76
Merged-chr17-69204783-3	chr17	69204699	69204899	+	722.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	Lx8b|LINE|L1	45443.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.04	5.03	6.85	8.04	24.55	6.27	11.96	17.3	11.6	10.54	9.55	6.89
Merged-chr13-113612570-4	chr13	113612417	113612617	+	722.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6047.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	2.42	5.53	6.85	2.82	14.73	15.05	2.99	3.87	11.6	10.04	14.57	5.64
Merged-chr9-121305638-2	chr9	121305535	121305735	+	722.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	8133.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.04	4.78	9.7	6.84	4.91	5.02	1.99	5.1	10.42	14.56	18.59	4.7
Merged-chr1-177141664-3	chr1	177141570	177141770	+	722.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107097.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	7.27	9.06	15.97	5.63	20.46	8.47	8.64	8.44	10.62	8.54	20.1	8.46
Merged-chr4-105275347-3	chr4	105275254	105275454	+	722.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	118007.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.65	8.8	22.82	10.05	17.18	10.35	2.99	16.77	12.39	13.05	31.66	9.4
Merged-chr17-81424562-3	chr17	81424471	81424671	+	722.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	313816.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	19.79	8.05	14.26	20.91	9.0	6.9	5.31	20.33	3.15	6.03	10.55	8.14
Merged-chr10-81393611-2	chr10	81393527	81393727	+	722.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099917, intron 1 of 3)	intron (NM_001099917, intron 1 of 3)	563.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	3.63	1.51	3.42	9.25	6.55	11.6	6.31	6.39	7.87	7.53	15.07	10.02
Merged-chr16-32688983-1	chr16	32688883	32689083	+	722.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15829.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	1.62	2.77	1.14	0.0	9.41	11.92	4.98	4.35	1.18	3.01	5.53	2.19
Merged-chr16-30009765-2	chr16	30009674	30009874	+	722.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1107.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	8.88	4.53	5.7	12.47	4.09	5.64	8.3	12.42	3.54	4.52	5.02	6.89
Merged-chr4-136160306-3	chr4	136160178	136160378	+	722.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11996.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	14.54	7.04	7.99	5.23	6.55	11.29	4.32	5.1	12.98	5.52	13.06	10.02
Merged-chr6-146141429-2	chr6	146141320	146141520	+	722.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	207298.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	1.76	1.71	2.41	6.55	6.59	12.95	19.12	5.9	23.1	16.58	8.77
Merged-chr3-153835829-1	chr3	153835729	153835929	+	722.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-8418.0	NM_025758	66772.0	Mm.116960	NM_025758	ENSMUSG00000038997	Asb17	4933436O18Rik	ankyrin repeat and SOCS box-containing 17	protein-coding	6.06	4.02	13.12	3.62	3.27	8.78	9.63	7.12	8.26	2.01	13.06	2.51
Merged-chr8-94227474-3	chr8	94227360	94227560	+	722.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172410, intron 2 of 22)	intron (NM_172410, intron 2 of 22)	12896.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	6.06	9.06	10.27	10.05	13.09	3.45	5.31	10.26	9.24	5.52	11.05	8.77
Merged-chr14-63409360-2	chr14	63409237	63409437	+	722.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7850.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	5.65	6.54	3.99	2.41	6.14	9.72	5.31	11.5	13.18	5.52	6.53	5.64
Merged-chr1-39761564-2	chr1	39761449	39761649	+	722.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40560.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	3.63	7.29	2.28	10.46	10.64	5.64	4.98	6.08	3.74	11.05	7.03	6.58
Merged-chr10-94829572-3	chr10	94829484	94829684	+	722.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114994.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	12.52	8.8	8.56	7.64	11.86	6.9	9.3	8.72	11.21	5.02	12.06	10.34
Merged-chr18-20888169-2	chr18	20888066	20888266	+	722.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	7912.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	7.27	7.04	12.55	11.66	5.73	3.45	1.66	10.93	6.49	6.03	8.54	6.58
Merged-chr6-7858662-2	chr6	7858583	7858783	+	722.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_052993, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	13459.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	10.5	3.52	6.85	7.64	7.36	11.6	4.98	10.26	2.95	2.01	11.56	4.39
Merged-chr12-112130386-3	chr12	112130294	112130494	+	722.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029590)	promoter-TSS (NR_029590)	-486.0	NR_029590	387199.0		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	20.59	17.36	31.38	14.08	15.14	4.39	5.65	6.39	7.47	9.04	9.55	8.46
Merged-chr19-41455209-3	chr19	41455096	41455296	+	722.600037	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-70056.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	10.5	15.34	13.12	6.03	9.0	8.78	7.64	7.51	9.05	12.55	10.05	8.14
Merged-chr2-33467696-3	chr2	33467600	33467800	+	722.594421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355611, intron 1 of 2)	intron (NM_001355611, intron 1 of 2)	832.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	9.29	6.04	3.42	8.45	13.5	11.6	8.3	6.39	10.82	16.07	12.56	16.6
Merged-chr9-56891614-3	chr9	56891503	56891703	+	722.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139001, intron 5 of 9)	intron (NM_139001, intron 5 of 9)	26499.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	14.13	8.8	11.41	8.45	12.27	8.78	3.32	10.6	10.23	18.08	11.56	14.72
Merged-chr2-15056017-3	chr2	15055911	15056111	+	722.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	649.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	12.11	7.29	2.28	5.23	12.68	5.64	7.97	7.51	9.44	5.52	8.04	10.34
Merged-chr4-48225875-2	chr4	48225780	48225980	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12665.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	7.27	2.77	6.28	4.02	6.95	5.33	5.31	13.04	11.6	8.03	18.59	3.13
Merged-chr10-94572115-1	chr10	94572015	94572215	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-3142.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.04	7.55	3.42	3.22	4.91	7.84	2.99	6.9	7.47	7.03	5.53	3.45
Merged-chr1-131246663-2	chr1	131246559	131246759	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1481.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	6.46	6.04	7.99	4.02	6.14	11.6	3.32	5.07	15.93	16.07	8.04	5.64
Merged-chr7-30806135-2	chr7	30806049	30806249	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14828.0	NM_001168512	233079.0	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	4.44	4.78	4.56	2.41	4.09	3.76	1.66	4.71	14.95	5.52	14.57	5.33
Merged-chr12-104228411-1	chr12	104228311	104228511	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-7736.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	3.23	3.52	5.13	4.83	3.68	7.53	4.98	7.37	5.9	3.51	3.52	2.19
Merged-chr8-111061819-2	chr8	111061721	111061921	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5482.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	4.85	2.52	5.13	2.82	5.32	5.33	7.64	7.49	10.23	2.51	4.52	9.71
Merged-chr1-55044859-2	chr1	55044756	55044956	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7914.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	6.86	5.03	6.28	4.83	7.77	5.02	14.95	6.76	9.05	5.52	22.11	4.07
Merged-chr14-104299280-2	chr14	104299166	104299366	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168733.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	2.26	2.28	0.8	1.64	6.27	3.32	5.44	10.62	3.51	7.03	6.89
Merged-chr17-78797332-2	chr17	78797231	78797431	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081179, intron 21 of 35)	intron (NM_001081179, intron 21 of 35)	38050.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	1.62	2.77	2.28	3.62	2.86	7.53	1.99	5.36	7.67	3.01	5.53	2.19
Merged-chr13-12520265-2	chr13	12520187	12520387	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_133643, exon 1 of 6)	5' UTR (NM_133643, exon 1 of 6)	163.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	6.06	5.03	5.7	6.03	4.91	3.14	3.65	6.98	3.74	4.02	5.53	5.64
Merged-chr4-119950316-1	chr4	119950216	119950416	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135638.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.42	3.02	5.13	6.84	6.55	5.33	10.96	6.03	2.16	1.51	4.52	2.82
Merged-chr12-55486425-2	chr12	55486325	55486525	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	6222.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.65	9.31	9.7	3.22	11.05	10.98	5.31	2.52	8.06	12.05	6.53	3.13
Merged-chr16-62786178-2	chr16	62786093	62786293	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178925, intron 1 of 5)	Lx8|LINE|L1	523.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	4.44	4.28	5.13	2.01	4.91	5.96	5.65	8.38	4.13	5.52	11.05	11.28
Merged-chr16-97431472-3	chr16	97431373	97431573	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019517, intron 8 of 8)	ID_B1|SINE|B4	31432.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	2.83	6.04	24.53	12.87	4.09	5.33	4.98	9.06	10.03	17.57	29.14	8.46
Merged-chr15-58791715-3	chr15	58791612	58791812	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 3 of 6)	tRNA-Ala-GCY_|tRNA|tRNA	31715.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	13.73	5.28	7.99	12.07	19.64	3.76	4.98	15.81	8.06	10.04	7.54	10.02
Merged-chr2-5577866-1	chr2	5577766	5577966	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	98180.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.44	5.03	6.85	10.86	7.77	5.02	1.99	10.91	5.7	2.51	7.03	5.33
Merged-chr19-45747651-3	chr19	45747550	45747750	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008723)	TTS (NM_008723)	1913.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	12.92	10.56	7.42	6.44	8.18	10.35	2.99	4.21	10.42	16.07	13.57	10.02
Merged-chr7-145124459-1	chr7	145124359	145124559	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83660.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.25	6.29	10.27	2.01	9.41	2.51	4.98	9.98	8.26	4.02	5.53	2.82
Merged-chr4-53307369-2	chr4	53307268	53307468	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37136.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.85	5.79	2.85	3.22	12.68	10.98	8.64	16.99	10.42	10.54	16.08	6.27
Merged-chr14-49154019-1	chr14	49153919	49154119	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18227.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	5.25	3.02	1.14	2.41	2.86	4.39	2.33	5.16	7.47	9.04	9.04	9.08
Merged-chr8-72723816-1	chr8	72723716	72723916	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113248, intron 1 of 6)	CpG	546.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	4.85	8.05	6.28	6.44	6.55	4.08	9.3	7.15	2.56	6.53	5.02	4.7
Merged-chrX-136742928-2	chrX	136742833	136743033	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168227)	promoter-TSS (NM_001168227)	-15.0	NM_001168227	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	7.27	12.83	0.57	4.02	7.36	12.54	6.31	12.03	9.83	2.01	17.08	5.64
Merged-chr1-87758529-1	chr1	87758429	87758629	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029846, intron 1 of 17)	intron (NM_029846, intron 1 of 17)	2518.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	2.83	3.27	4.56	6.44	8.18	9.41	2.99	5.52	3.74	2.01	3.01	2.82
Merged-chr8-109002110-1	chr8	109002010	109002210	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65250.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.44	3.27	6.85	6.84	6.95	3.76	6.98	6.06	5.51	2.51	5.53	2.82
Merged-chr5-24603146-3	chr5	24603061	24603261	+	722.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	9.69	6.04	9.7	7.24	14.32	10.03	15.61	11.69	9.05	9.54	10.05	10.65
Merged-chr11-101969002-3	chr11	101968874	101969074	+	722.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1959.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	11.71	10.06	10.84	11.26	7.36	5.33	7.64	6.93	10.42	7.53	9.04	7.21
Merged-chr5-124442650-2	chr5	124442472	124442672	+	722.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	2642.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	1.62	3.52	3.99	0.8	2.86	0.94	3.32	2.21	5.7	2.01	3.52	2.82
Merged-chr11-97512530-4	chr11	97512342	97512542	+	722.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-12102.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	2.42	0.75	2.85	0.4	2.05	2.82	4.32	1.15	3.74	4.52	2.01	5.64
Merged-chr15-36683057-3	chr15	36682942	36683142	+	722.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74069.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	7.67	8.05	8.56	11.66	8.18	9.09	3.99	14.69	9.64	6.53	14.07	6.58
Merged-chr9-106369095-2	chr9	106369051	106369251	+	722.424988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153459, exon 1 of 3)	exon (NM_153459, exon 1 of 3)	519.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.04	6.54	2.85	0.8	5.32	5.02	7.97	3.39	8.65	6.53	8.04	12.53
Merged-chr12-40486647-2	chr12	40486571	40486771	+	722.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	40618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.04	3.27	7.99	6.44	9.0	11.29	5.65	8.36	8.85	16.57	11.56	1.88
Merged-chr5-43236199-2	chr5	43236092	43236292	+	722.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	-838.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.46	4.02	6.85	9.65	7.36	5.64	1.99	10.91	9.44	3.51	13.57	10.96
Merged-chr1-191021334-2	chr1	191021221	191021421	+	722.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081259, intron 1 of 9)	intron (NM_001081259, intron 1 of 9)	-4030.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	3.23	4.28	7.99	5.23	9.82	16.31	8.3	8.58	8.65	3.01	12.06	12.53
Merged-chr5-100664238-6	chr5	100664127	100664327	+	722.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027978, intron 2 of 6)	intron (NM_027978, intron 2 of 6)	10029.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	2.42	4.28	7.42	2.82	3.27	5.02	6.31	3.31	4.33	4.52	8.04	4.39
Merged-chr4-132951220-2	chr4	132951116	132951316	+	722.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22879.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	7.67	3.27	2.85	3.22	11.45	5.33	7.64	7.01	10.23	15.57	10.55	12.84
Merged-chr6-22459619-2	chr6	22459527	22459727	+	722.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR48B|LTR|ERV1	-103546.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	10.9	8.05	13.12	10.86	5.73	5.02	1.33	15.28	7.47	8.54	26.13	9.4
Merged-chr4-149665601-2	chr4	149665482	149665682	+	722.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-2266.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	9.29	5.28	0.0	6.44	12.68	5.02	13.62	6.76	11.01	3.01	4.02	5.01
Merged-chr9-111037569-2	chr9	111037479	111037679	+	722.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	18287.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	4.85	6.04	3.42	5.63	10.64	16.31	5.98	2.89	11.8	3.51	11.05	1.57
Merged-chr18-5141541-1	chr18	5141441	5141641	+	722.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24190.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	2.42	2.52	2.85	3.22	6.55	4.08	7.64	7.01	3.34	3.51	6.03	4.39
Merged-chr12-72104719-1	chr12	72104619	72104819	+	722.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028687, intron 19 of 20)	intron (NM_028687, intron 19 of 20)	18880.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	2.42	5.53	1.14	3.22	9.41	7.84	2.33	9.59	4.13	4.02	13.57	3.13
Merged-chr6-21985926-3	chr6	21985813	21986013	+	722.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	3.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	7.27	7.8	5.13	9.25	11.86	6.59	6.64	14.1	13.57	8.54	6.53	5.01
Merged-chr2-93456336-1	chr2	93456236	93456436	+	722.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040533, exon 3 of 3)	non-coding (NR_040533, exon 3 of 3)	3517.0	NR_040533	100038525.0	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	-	predicted gene 10804	ncRNA	8.88	3.02	11.41	0.8	8.59	12.54	12.95	2.3	4.13	2.51	3.01	0.63
Merged-chr7-100952873-3	chr7	100952782	100952982	+	722.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	11484.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	13.33	5.28	11.41	21.32	9.82	8.47	10.63	23.55	6.88	6.03	25.63	8.14
Merged-chr10-52232649-2	chr10	52232560	52232760	+	722.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-959.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	9.69	5.79	2.85	2.82	6.55	10.98	8.97	5.07	5.9	4.52	8.04	3.45
Merged-chr11-47020161-2	chr11	47020064	47020264	+	722.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	209365.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.44	5.53	14.26	8.85	7.36	1.57	10.3	7.49	5.31	7.53	9.04	2.82
Merged-chr1-55665318-2	chr1	55665199	55665399	+	722.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	259353.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.81	2.26	6.85	0.4	6.14	4.39	2.33	8.38	5.11	4.52	13.06	7.52
Merged-chr4-136896016-2	chr4	136895899	136896099	+	722.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007572)	TTS (NM_007572)	2845.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	10.5	5.28	9.13	6.84	10.64	8.15	12.29	10.09	6.69	7.53	3.01	5.01
Merged-chr10-87107736-2	chr10	87107629	87107829	+	722.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029685, intron 2 of 5)	intron (NM_029685, intron 2 of 5)	49683.0	NM_029685	76640.0	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	8.08	12.83	22.25	9.65	0.82	5.64	1.99	4.35	7.28	11.05	6.53	3.45
Merged-chr2-114622739-3	chr2	114622629	114622829	+	722.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	32235.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	3.23	9.31	7.99	7.24	4.5	6.27	6.31	5.66	14.55	7.53	17.59	4.39
Merged-chr17-24644123-3	chr17	24644016	24644216	+	722.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	841.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	10.09	6.79	5.7	5.63	5.32	8.78	7.64	6.5	9.83	5.02	11.05	8.14
Merged-chr1-54910055-3	chr1	54909949	54910149	+	722.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	16338.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	11.31	8.55	12.55	14.88	7.77	7.53	6.98	13.79	10.23	25.11	15.58	8.46
Merged-chr1-135112867-2	chr1	135112756	135112956	+	722.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153383, intron 25 of 36)	intron (NR_153383, intron 25 of 36)	-7580.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	4.44	6.04	6.85	1.61	4.09	14.42	5.98	7.88	15.54	4.02	8.04	5.33
Merged-chr17-12741510-3	chr17	12741420	12741620	+	722.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027773, intron 1 of 2)	CpG	209.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	4.44	3.02	2.85	0.8	3.68	3.76	0.66	2.69	3.54	6.03	7.03	5.95
Merged-chr13-3545113-2	chr13	3545000	3545200	+	722.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	7025.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	2.02	4.02	5.7	9.65	2.45	5.33	4.98	7.35	14.55	10.54	17.08	5.95
Merged-chr18-60894371-3	chr18	60894285	60894485	+	722.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-17855.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	8.48	5.53	4.56	11.26	3.68	6.9	8.64	6.11	13.77	6.03	16.58	12.22
Merged-chr6-71166957-3	chr6	71166853	71167053	+	722.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22573.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	10.5	6.54	11.41	4.02	9.82	7.84	5.65	8.19	11.6	6.53	7.54	14.41
Merged-chr2-137114481-3	chr2	137114394	137114594	+	722.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013822, intron 2 of 25)	intron (NM_013822, intron 2 of 25)	2026.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.83	4.02	7.99	10.86	20.46	8.78	13.62	18.67	8.06	12.05	9.55	8.46
Merged-chr16-21778685-1	chr16	21778585	21778785	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023737, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	9149.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	5.65	7.55	0.0	3.22	6.95	2.82	9.3	6.28	2.36	10.04	4.02	5.64
Merged-chr16-91387053-1	chr16	91386953	91387153	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	14270.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.44	4.53	17.11	2.41	8.18	2.82	8.3	16.01	9.05	6.53	3.01	6.27
Merged-chr10-122895244-2	chr10	122895147	122895347	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90477.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	2.42	3.02	14.26	3.22	6.55	10.35	3.65	6.28	9.44	6.03	8.54	5.95
Merged-chr6-39557581-1	chr6	39557481	39557681	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172477, exon 1 of 19)	5' UTR (NM_172477, exon 1 of 19)	253.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	2.42	6.54	3.42	2.41	1.23	3.76	0.66	2.16	1.97	2.01	5.02	3.45
Merged-chr12-57252811-2	chr12	57252714	57252914	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	L1_Mur3|LINE|L1	22389.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	2.42	0.75	6.28	12.07	2.05	1.88	4.98	7.68	15.14	6.03	12.06	5.33
Merged-chr9-32925994-1	chr9	32925894	32926094	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131058, intron 1 of 3)	intron (NR_131058, intron 1 of 3)	2972.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	1.62	0.0	1.71	8.85	5.73	6.9	9.3	12.95	0.79	1.51	1.51	0.63
Merged-chr3-41408030-2	chr3	41407926	41408126	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.85	1.26	4.56	7.24	5.32	4.08	6.31	11.89	8.06	5.02	5.02	4.39
Merged-chr13-69545200-2	chr13	69545122	69545322	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11358.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.65	8.05	5.13	8.85	9.0	5.96	1.99	6.36	7.08	7.03	6.03	5.64
Merged-chr16-27385351-1	chr16	27385251	27385451	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-3605.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.23	3.77	0.0	3.22	1.64	5.02	1.0	5.41	3.15	6.03	5.02	4.07
Merged-chr3-53027551-1	chr3	53027451	53027651	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10328.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	9.29	4.78	1.14	4.02	3.68	5.64	6.98	6.5	12.59	2.51	6.53	5.95
Merged-chr4-53303696-1	chr4	53303596	53303796	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33464.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	7.27	1.76	9.13	0.8	7.36	18.19	9.3	5.19	4.92	3.01	9.55	0.63
Merged-chr11-20926102-1	chr11	20926002	20926202	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94994.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.42	5.53	2.28	5.23	2.45	6.27	3.32	5.78	4.72	4.02	3.01	4.7
Merged-chr16-84991454-1	chr16	84991354	84991554	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 12 of 15)	PB1D10|SINE|Alu	19243.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.85	3.02	3.42	13.67	5.73	3.76	5.31	8.38	7.28	8.54	8.54	3.45
Merged-chr3-96716024-1	chr3	96715924	96716124	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028925, intron 9 of 14)	intron (NM_028925, intron 9 of 14)	-7464.0	NM_030094	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	4.44	1.51	5.7	5.63	2.45	8.47	5.65	6.73	5.9	7.03	9.04	3.45
Merged-chr11-45008277-1	chr11	45008177	45008377	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007897)	TTS (NM_007897)	108651.0	NR_045100	100504255.0	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	-	predicted gene 12159	ncRNA	10.5	6.04	2.28	12.87	3.68	2.51	2.66	6.36	4.72	4.52	7.03	3.45
Merged-chr14-54227770-3	chr14	54227696	54227896	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26133.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	4.44	6.29	2.85	0.0	8.18	3.14	1.99	4.79	6.49	8.54	6.53	6.27
Merged-chr7-105745005-3	chr7	105744908	105745108	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-670.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	9.69	8.8	10.27	6.84	8.59	9.09	4.98	7.51	12.78	13.05	23.11	8.46
Merged-chr7-31126377-1	chr7	31126277	31126477	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	646.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	2.02	5.28	9.7	3.62	4.91	1.57	6.98	2.72	9.44	10.54	3.52	4.07
Merged-chr6-3749792-1	chr6	3749692	3749892	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001042725, intron 3 of 14)	intron (NM_001042725, intron 3 of 14)	13831.0	NM_001042725	12311.0	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr|Ct-r	calcitonin receptor	protein-coding	2.42	3.52	12.55	12.87	1.64	2.82	4.32	6.59	4.13	7.03	1.0	4.39
Merged-chr16-77014888-1	chr16	77014788	77014988	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	819.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.65	2.26	0.0	2.41	9.41	2.82	5.98	5.38	5.9	7.53	6.03	5.95
Merged-chr14-76909713-1	chr14	76909613	76909813	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	126904.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	1.62	4.53	1.14	8.04	11.86	5.96	2.99	8.52	2.36	2.51	4.52	0.94
Merged-chr1-131934760-3	chr1	131934656	131934856	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	24298.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	7.27	7.8	3.42	20.11	7.36	10.66	12.95	12.2	9.83	4.02	13.57	6.58
Merged-chr7-74555580-1	chr7	74555480	74555680	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-800.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.42	3.52	4.56	3.22	2.05	3.14	1.66	3.17	10.42	7.03	12.06	5.01
Merged-chr13-5844888-2	chr13	5844788	5844988	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13204.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.08	6.79	2.28	0.8	6.55	11.29	4.98	0.56	14.55	10.04	3.01	8.14
Merged-chrX-100480510-3	chrX	100480419	100480619	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13772.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	8.88	6.04	7.99	7.24	9.0	13.48	5.65	16.35	16.52	7.53	12.06	13.16
Merged-chr1-172513587-2	chr1	172513487	172513687	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7543.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	6.86	3.27	4.56	4.42	5.73	6.59	2.66	6.14	11.6	10.04	15.58	10.02
Merged-chr3-35930073-2	chr3	35929984	35930184	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033623)	promoter-TSS (NM_033623)	-10.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	4.44	6.79	2.85	10.86	5.32	8.47	6.64	7.85	2.75	1.0	6.53	3.13
Merged-chr2-79107881-2	chr2	79107781	79107981	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147545.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	6.06	5.79	16.54	5.23	6.55	3.45	19.27	15.14	10.03	11.55	27.13	9.71
Merged-chr19-38352905-1	chr19	38352805	38353005	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43075.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	4.44	5.28	12.55	5.23	1.23	6.27	1.66	5.05	7.08	4.02	10.05	6.58
Merged-chr4-132269033-1	chr4	132268933	132269133	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	1153.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	8.48	10.31	3.42	9.65	4.09	4.7	6.64	3.28	10.42	2.01	5.53	4.7
Merged-chr11-120233718-1	chr11	120233618	120233818	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198423, intron 1 of 27)	intron (NM_198423, intron 1 of 27)	771.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	3.63	3.52	0.0	1.61	1.64	0.63	1.33	1.6	9.44	6.03	3.52	8.46
Merged-chr5-113814553-1	chr5	113814453	113814653	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-14201.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.81	6.54	0.0	1.21	3.27	16.93	2.33	2.86	9.83	8.03	6.03	2.19
Merged-chr4-133160419-1	chr4	133160319	133160519	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	RSINE1|SINE|B4	29786.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.65	5.79	5.7	4.83	6.95	5.33	8.97	6.93	5.7	14.56	16.08	3.13
Merged-chr1-54762804-1	chr1	54762704	54762904	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 7 of 27)	intron (NM_001081433, intron 7 of 27)	163583.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.02	5.79	4.56	0.4	1.64	5.64	1.99	4.01	4.52	1.51	3.01	7.21
Merged-chr13-64309245-1	chr13	64309145	64309345	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025370, intron 2 of 5)	intron (NM_025370, intron 2 of 5)	3465.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.44	3.52	3.42	1.21	2.86	2.82	6.31	6.98	6.69	2.01	3.01	2.51
Merged-chr8-13678439-1	chr8	13678339	13678539	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-852.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.25	2.52	5.7	6.44	2.86	3.76	2.99	6.5	1.77	2.01	5.53	2.82
Merged-chr11-75193878-1	chr11	75193778	75193978	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177708)	promoter-TSS (NM_177708)	-115.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	3.63	3.02	0.57	0.0	6.55	5.33	3.32	3.08	5.7	1.51	4.02	3.45
Merged-chr2-35199758-1	chr2	35199658	35199858	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	1362.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	2.83	2.01	4.56	1.61	2.45	1.25	3.99	1.79	2.16	1.0	0.5	3.13
Merged-chr10-37342498-2	chr10	37342403	37342603	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-203577.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	9.69	1.51	8.56	9.65	16.36	4.08	7.64	12.06	2.56	3.01	8.04	1.88
Merged-chr13-47214291-1	chr13	47214191	47214391	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	20288.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.44	2.26	1.14	2.41	1.23	1.88	8.97	4.99	1.38	3.01	2.01	3.45
Merged-chr5-5373382-1	chr5	5373282	5373482	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	6869.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.62	8.55	11.41	3.22	1.64	1.25	0.0	1.18	5.9	7.03	6.53	2.82
Merged-chr18-4343363-2	chr18	4343284	4343484	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	9569.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.44	2.01	1.71	1.61	4.5	10.35	6.31	6.59	10.03	7.53	7.03	7.21
Merged-chr10-121603714-1	chr10	121603614	121603814	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359618, intron 17 of 24)	intron (NM_001359618, intron 17 of 24)	-16920.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	1.01	0.0	0.0	3.68	1.88	7.97	6.93	3.74	5.52	6.53	3.45
Merged-chr6-140767048-1	chr6	140766948	140767148	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140163.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.44	6.54	4.56	6.03	8.18	7.21	4.65	6.9	6.88	12.55	13.06	2.82
Merged-chr3-116072740-1	chr3	116072640	116072840	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56948.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.23	2.77	3.99	2.41	6.55	1.57	7.97	6.17	3.15	5.02	2.51	2.51
Merged-chr9-47655069-1	chr9	47654969	47655169	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	124717.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.23	2.01	0.57	1.61	4.09	7.84	0.66	6.06	6.29	2.01	12.56	3.13
Merged-chr5-123831954-2	chr5	123831856	123832056	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33560.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.0	1.01	2.85	2.41	6.95	2.51	2.99	6.48	16.92	14.06	9.04	10.02
Merged-chr17-81663143-1	chr17	81663043	81663243	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	75244.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	7.67	5.03	2.85	1.61	7.36	3.14	1.99	7.49	7.47	6.53	3.01	2.51
Merged-chr5-143059043-3	chr5	143058931	143059131	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53989.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.44	10.06	10.84	1.61	6.55	3.76	5.65	4.68	9.64	12.05	10.55	5.33
Merged-chr19-44578243-1	chr19	44578143	44578343	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	15389.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.4	2.77	5.7	9.65	3.68	6.59	4.65	4.21	2.75	0.0	4.52	2.19
Merged-chr1-131867872-2	chr1	131867775	131867975	+	721.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144875, intron 2 of 5)	intron (NM_144875, intron 2 of 5)	598.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	5.65	7.8	2.28	12.87	6.55	8.47	10.96	6.9	6.29	11.05	9.55	7.21
Merged-chr11-57802031-2	chr11	57801934	57802134	+	721.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	397.0	NM_001081168	50724.0	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	4.85	7.55	6.85	14.48	10.23	6.9	11.63	9.08	4.72	4.02	9.04	9.71
Merged-chrX-166329059-2	chrX	166328955	166329155	+	721.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	-15498.0	NM_001177958	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	1.62	6.79	10.27	6.44	8.59	5.33	3.65	9.81	6.88	16.57	14.07	9.08
Merged-chr8-11187748-3	chr8	11187655	11187855	+	721.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125050.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	9.29	12.58	4.56	10.86	11.86	9.72	12.29	13.54	9.64	12.55	11.05	7.52
Merged-chr1-173441279-1	chr1	173441179	173441379	+	721.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20675.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.65	9.81	6.28	5.23	10.23	10.35	7.97	5.94	5.7	6.03	4.02	3.76
Merged-chr11-11667710-3	chr11	11667556	11667756	+	721.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18269.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	2.02	6.54	5.7	6.84	3.27	2.51	10.63	6.53	10.03	4.02	9.04	8.14
Merged-chr8-73350531-3	chr8	73350432	73350632	+	721.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	3008.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.21	7.04	6.85	6.44	6.55	5.64	4.32	9.25	13.77	6.53	14.57	6.27
Merged-chr3-41528756-2	chr3	41528673	41528873	+	721.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130791)	promoter-TSS (NR_130791)	-299.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	3.23	5.03	2.85	6.84	15.55	6.9	8.3	11.13	9.83	11.55	13.57	7.21
Merged-chr5-30848782-2	chr5	30848684	30848884	+	721.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-13023.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	13.73	8.3	15.4	6.03	11.86	6.27	4.98	9.79	4.52	4.02	11.05	4.39
Merged-chr18-76949014-3	chr18	76948914	76949114	+	721.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361227, intron 1 of 6)	intron (NM_001361227, intron 1 of 6)	4630.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	7.27	7.04	6.28	3.22	9.82	8.78	5.98	7.63	12.19	8.54	8.54	13.47
Merged-chr6-146640784-3	chr6	146640691	146640891	+	721.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1788.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	13.33	10.56	7.99	10.05	11.45	11.6	9.3	7.43	9.44	13.05	9.55	7.83
Merged-chr16-76977173-3	chr16	76977032	76977232	+	721.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33749.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	5.25	9.06	5.7	10.05	3.27	6.27	14.28	13.18	8.65	13.05	7.54	6.58
Merged-chr15-103358045-2	chr15	103357929	103358129	+	721.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314041, intron 3 of 30)	intron (NM_001314041, intron 3 of 30)	-7504.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	11.71	6.54	13.12	6.84	12.68	5.96	7.64	7.93	4.92	4.52	11.56	3.13
Merged-chr2-66132094-2	chr2	66131996	66132196	+	721.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7303.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.86	6.54	10.84	10.46	5.73	5.96	19.27	24.17	6.88	8.54	11.05	6.58
Merged-chr11-8545969-3	chr11	8545872	8546072	+	721.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 7 of 30)	intron (NM_001083587, intron 7 of 30)	118563.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.88	11.57	9.7	10.46	22.09	20.07	7.64	14.89	20.26	12.55	11.56	7.83
Merged-chr8-80969691-3	chr8	80969589	80969789	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	45217.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.85	3.52	7.99	10.46	22.09	13.8	11.96	18.2	7.28	5.02	14.07	5.64
Merged-chr11-100735638-3	chr11	100735519	100735719	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2596.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	9.69	8.3	0.57	5.23	5.73	2.51	1.99	5.94	8.46	10.54	10.05	4.7
Merged-chr5-147071237-1	chr5	147071137	147071337	+	721.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	5335.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.04	3.52	7.99	2.82	9.0	8.78	7.31	5.8	1.77	0.5	3.52	0.0
Merged-chrX-36129987-3	chrX	36129883	36130083	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 2 of 10)	intron (NM_133990, intron 2 of 10)	17875.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	7.67	5.28	13.69	8.45	13.5	10.98	7.97	7.77	11.41	22.59	11.05	10.34
Merged-chr8-68092845-3	chr8	68092758	68092958	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118284.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.65	7.29	11.41	12.07	7.77	4.39	1.66	12.36	10.62	10.54	17.59	6.27
Merged-chr10-26751045-2	chr10	26750936	26751136	+	721.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21476.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	9.29	6.79	3.99	18.1	9.0	8.47	7.97	14.07	6.49	3.51	7.54	4.7
Merged-chr9-106903967-2	chr9	106903875	106904075	+	721.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-12037.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	4.04	5.28	1.71	14.88	4.5	8.47	1.33	5.72	12.59	6.03	19.6	9.71
Merged-chr4-3090165-2	chr4	3090087	3090287	+	721.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-81896.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	14.54	5.79	13.69	5.23	11.86	4.08	7.97	22.12	0.79	7.03	4.02	3.76
Merged-chr5-103778446-2	chr5	103778347	103778547	+	721.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	23874.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.06	4.02	10.27	2.82	14.73	7.21	7.97	7.96	10.23	10.54	4.52	6.27
Merged-chr8-77341888-2	chr8	77341798	77341998	+	721.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 18 of 22)	AT_rich|Low_complexity|Low_complexity	-175158.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	10.5	5.79	17.68	5.63	10.23	7.84	10.96	12.2	0.59	1.51	4.02	1.88
Merged-chr1-170632570-3	chr1	170632467	170632667	+	721.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11965.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	9.29	9.31	10.27	7.24	13.91	13.48	7.64	6.53	13.77	11.55	14.57	4.7
Merged-chr14-27351213-2	chr14	27351111	27351311	+	721.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-10178.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	9.69	5.28	9.7	9.65	13.09	6.59	13.95	10.46	5.7	7.03	10.05	4.39
Merged-chr2-5592599-3	chr2	5592491	5592691	+	721.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	83455.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	9.69	7.04	11.41	10.86	17.59	12.23	14.28	16.68	7.28	8.03	3.52	4.7
Merged-chr11-80175544-3	chr11	80175462	80175662	+	721.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-8310.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	8.88	3.52	14.26	6.84	11.86	10.03	4.65	4.35	11.01	4.52	20.6	7.52
Merged-chr10-78164114-3	chr10	78164027	78164227	+	721.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138601, intron 5 of 6)	intron (NM_138601, intron 5 of 6)	5641.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	12.52	7.29	10.27	4.83	8.59	11.29	7.31	10.01	13.96	6.03	12.06	11.9
Merged-chr4-101314759-2	chr4	101314652	101314852	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32275.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	4.44	5.03	14.83	7.24	6.14	5.96	5.98	10.6	10.23	6.03	5.53	7.83
Merged-chr1-157407724-1	chr1	157407624	157407824	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-4628.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.04	1.01	2.85	0.0	4.5	5.33	5.98	5.94	3.74	3.51	7.03	3.76
Merged-chr5-25082791-1	chr5	25082691	25082891	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	17851.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.23	2.77	0.0	3.62	19.23	5.96	8.3	6.59	4.13	2.51	9.04	5.64
Merged-chr13-3805875-1	chr13	3805775	3805975	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1557.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.44	3.52	7.42	2.82	7.36	2.82	8.97	5.61	3.15	3.51	5.02	4.07
Merged-chr13-109821872-1	chr13	109821772	109821972	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81937.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	1.62	0.5	0.0	2.41	5.73	0.0	4.98	5.52	0.0	0.5	0.5	0.0
Merged-chr10-22701138-1	chr10	22701038	22701238	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	28294.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	5.65	4.53	3.99	4.02	9.41	2.82	4.98	6.7	4.52	2.51	2.01	6.27
Merged-chr18-66291840-2	chr18	66291726	66291926	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178793)	promoter-TSS (NM_178793)	12.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	10.5	6.29	3.42	6.44	2.05	5.02	5.65	7.54	7.67	2.51	11.56	6.89
Merged-chr18-53090525-1	chr18	53090425	53090625	+	721.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85767.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	8.08	3.52	8.56	10.05	1.64	1.88	1.99	1.91	11.41	10.04	12.56	11.28
Merged-chr4-59349919-1	chr4	59349819	59350019	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163288, exon 12 of 17)	exon (NM_001163288, exon 12 of 17)	88714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.06	8.05	7.42	6.84	0.82	5.02	5.31	5.75	5.7	3.01	2.01	1.57
Merged-chr9-120434026-1	chr9	120433926	120434126	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-58580.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	5.25	4.53	13.69	6.44	6.55	8.78	2.99	10.74	8.65	7.53	15.58	7.52
Merged-chr2-72410120-1	chr2	72410020	72410220	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 11 of 19)	intron (NM_023057, intron 11 of 19)	-66099.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.81	3.27	5.13	6.03	8.18	4.39	1.99	6.48	5.7	2.01	8.54	3.76
Merged-chr16-42165117-2	chr16	42165013	42165213	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361282, intron 9 of 10)	intron (NM_001361282, intron 9 of 10)	138356.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.81	3.77	1.14	2.41	5.73	4.39	10.96	6.17	10.23	5.02	12.06	4.07
Merged-chr8-27172251-2	chr8	27172147	27172347	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029423, intron 1 of 4)	intron (NM_029423, intron 1 of 4)	2399.0	NM_029423	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	14.94	5.28	14.83	0.8	4.5	17.56	7.31	1.01	13.57	15.06	5.02	3.76
Merged-chr15-101275851-2	chr15	101275750	101275950	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8451.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	9.29	6.29	11.98	6.44	4.91	6.27	5.98	3.28	15.74	17.07	8.04	8.77
Merged-chr10-44005865-2	chr10	44005785	44005985	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1039.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	4.85	8.55	2.85	4.42	8.18	9.41	3.32	5.78	12.39	11.55	12.06	8.14
Merged-chr12-70235368-2	chr12	70235257	70235457	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7516.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	3.63	5.03	5.7	6.44	9.0	9.72	10.3	7.07	8.06	16.57	12.56	5.95
Merged-chr11-107229181-2	chr11	107229083	107229283	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 7 of 9)	B4A|SINE|B4	-39802.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	2.26	9.13	11.26	3.27	3.14	8.97	7.68	5.11	7.03	8.04	9.4
Merged-chrX-152144341-1	chrX	152144241	152144441	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001114664)	promoter-TSS (NM_001114664)	73.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.0	1.51	0.0	4.42	1.23	1.57	9.63	4.09	3.54	1.0	1.0	5.01
Merged-chr11-93861478-2	chr11	93861368	93861568	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013375, intron 12 of 13)	intron (NM_001013375, intron 12 of 13)	24298.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	5.25	5.28	9.13	2.82	11.45	15.68	15.94	20.61	5.11	4.52	12.56	7.52
Merged-chr11-85492474-2	chr11	85492369	85492569	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 14 of 25)	intron (NM_138681, intron 14 of 25)	139305.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.85	4.28	2.85	10.86	10.23	12.86	19.6	14.78	9.24	3.51	13.06	9.71
Merged-chr5-23115615-1	chr5	23115515	23115715	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	RLTR11A|LTR|ERVK	318738.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.0	0.5	2.28	0.8	6.55	3.14	1.66	5.97	3.34	0.0	0.0	1.57
Merged-chr8-36267462-2	chr8	36267375	36267575	+	721.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17959.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	1.62	1.26	6.28	1.61	14.73	12.54	14.62	8.75	10.82	1.0	5.53	5.64
Merged-chr5-86069608-3	chr5	86069518	86069718	+	721.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2128.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	10.9	5.28	9.13	7.24	9.0	9.41	9.63	16.88	20.46	17.57	10.05	10.65
Merged-chr9-120766497-1	chr9	120766397	120766597	+	721.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	148753.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.65	7.04	6.85	4.83	10.64	12.23	13.95	3.87	0.98	0.5	2.01	5.95
Merged-chr2-104740451-3	chr2	104740411	104740611	+	721.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	2290.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	6.86	9.56	14.26	7.24	4.91	8.47	5.98	7.32	7.47	5.02	4.52	4.39
Merged-chr9-64793093-3	chr9	64792971	64793171	+	721.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17940.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	10.09	6.04	21.68	13.27	18.82	6.59	6.64	9.84	6.1	1.0	8.04	8.77
Merged-chr3-65922650-2	chr3	65922528	65922728	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35621.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.65	8.8	5.7	5.63	4.5	13.48	7.31	5.89	11.41	14.56	19.6	8.46
Merged-chr11-75415242-2	chr11	75415094	75415294	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011340, intron 4 of 7)	intron (NM_011340, intron 4 of 7)	7429.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	2.02	3.27	1.14	0.4	4.09	4.39	2.66	2.33	4.13	3.01	3.01	5.64
Merged-chr13-60744302-2	chr13	60744177	60744377	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42087.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.65	6.79	3.42	2.41	9.41	11.6	6.64	6.08	12.98	9.04	11.05	10.02
Merged-chr4-3737125-2	chr4	3737031	3737231	+	721.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	22167.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	6.86	6.54	10.27	11.66	15.96	12.54	20.93	3.59	5.9	1.51	3.01	4.39
Merged-chr9-75437768-2	chr9	75437666	75437866	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3758.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	8.88	5.79	3.42	5.63	7.77	5.02	1.66	5.07	16.92	12.55	14.57	4.07
Merged-chr5-146921425-2	chr5	146921333	146921533	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27224.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	2.42	3.27	5.13	1.61	1.23	5.33	2.99	6.39	11.8	8.54	11.56	10.02
Merged-chr13-42061059-3	chr13	42060960	42061160	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	9039.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	11.71	8.3	2.28	4.83	9.0	8.47	1.33	6.53	9.05	8.54	18.09	3.45
Merged-chr12-70119778-3	chr12	70119686	70119886	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7751.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	10.09	4.28	8.56	7.24	11.05	8.78	6.64	9.7	10.03	13.56	10.05	10.96
Merged-chr16-78452505-3	chr16	78452406	78452606	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75325.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	10.5	3.02	10.27	4.02	2.86	11.29	2.66	10.82	9.05	6.53	6.03	10.65
Merged-chr8-105121154-3	chr8	105121047	105121247	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10653.0	NM_146213	234677.0	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	9.29	9.56	10.84	14.08	8.59	10.35	6.64	6.22	14.75	10.54	10.05	12.84
Merged-chr6-8274615-2	chr6	8274506	8274706	+	721.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	15318.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	1.62	4.53	1.14	2.41	7.36	6.59	3.65	6.62	10.62	13.05	8.54	5.95
Merged-chr9-16312196-3	chr9	16312154	16312354	+	721.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65977.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.23	4.28	9.13	11.26	14.32	8.47	11.29	19.29	5.51	8.54	5.02	10.34
Merged-chr4-63151358-3	chr4	63151267	63151467	+	721.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007443, intron 3 of 9)	intron (NM_007443, intron 3 of 9)	2805.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	7.27	10.56	12.55	7.24	11.05	23.83	34.55	26.13	5.51	9.54	12.56	5.33
Merged-chr12-98320183-3	chr12	98320064	98320264	+	721.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51529.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	11.71	7.29	16.54	14.08	9.0	6.9	12.95	20.02	8.26	9.54	16.08	9.08
Merged-chr10-9675383-3	chr10	9675365	9675565	+	721.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177271)	promoter-TSS (NM_177271)	-257.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	5.25	7.29	6.85	9.65	4.09	8.47	18.27	15.87	12.19	7.03	10.05	6.89
Merged-chr5-135870718-3	chr5	135870608	135870808	+	721.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021403, intron 14 of 14)	URR1A|DNA|hAT-Charlie	-17211.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	6.46	9.06	19.4	6.84	9.82	17.87	4.98	6.81	16.72	12.55	10.05	16.6
Merged-chr10-87858429-5	chr10	87858448	87858648	+	721.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	283.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.85	2.52	3.42	6.84	7.36	7.84	1.99	4.57	6.88	7.53	4.02	3.13
Merged-chr10-5600332-2	chr10	5600211	5600411	+	721.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026793, intron 1 of 1)	intron (NM_026793, intron 1 of 1)	6583.0	NM_026793	68632.0	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	12.11	4.28	1.71	8.04	6.14	6.9	10.63	9.62	13.18	13.05	12.56	11.59
Merged-chr9-120691763-2	chr9	120691663	120691863	+	721.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	114432.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	5.25	8.55	2.28	9.25	15.55	8.15	6.98	8.55	2.36	2.01	3.52	0.63
Merged-chr10-122544445-3	chr10	122544343	122544543	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25448.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.65	10.31	8.56	10.86	6.95	11.29	8.64	14.69	4.33	13.56	6.03	16.29
Merged-chr8-70166855-3	chr8	70166750	70166950	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310055, exon 8 of 9)	exon (NM_001310055, exon 8 of 9)	-5558.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	14.54	9.06	16.54	15.69	9.0	15.37	5.31	3.59	7.08	9.04	5.53	9.4
Merged-chr15-77874464-3	chr15	77874374	77874574	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32299.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	5.25	5.79	9.13	5.23	11.86	5.02	9.3	7.18	12.59	6.53	8.04	10.96
Merged-chr4-108578032-3	chr4	108577953	108578153	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172697, intron 1 of 9)	intron (NM_172697, intron 1 of 9)	1283.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	7.67	13.83	12.55	8.45	10.23	7.53	1.66	5.97	9.44	3.01	5.53	4.39
Merged-chr3-81120891-2	chr3	81120780	81120980	+	721.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	84464.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.62	1.26	3.42	4.83	9.41	3.76	8.64	11.41	6.69	2.51	6.03	8.14
Merged-chr3-93362097-2	chr3	93361999	93362199	+	721.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31600.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	8.88	9.56	3.42	6.44	9.0	6.27	3.99	8.66	4.92	5.52	5.53	5.95
Merged-chr16-49967257-2	chr16	49967167	49967367	+	721.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	11437.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	5.25	3.27	8.56	6.44	7.77	9.72	7.31	15.42	9.05	12.55	12.06	5.01
Merged-chr18-24227832-3	chr18	24227741	24227941	+	721.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	ORR1B1-int|LTR|ERVL-MaLR	21847.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	11.71	10.82	6.85	7.24	10.64	10.35	3.32	4.91	13.96	14.06	3.52	8.77
Merged-chr13-112466225-2	chr13	112466117	112466317	+	721.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2147.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	8.88	7.04	9.13	11.26	15.14	10.03	12.62	9.39	6.69	13.56	10.55	3.45
Merged-chr16-85134392-2	chr16	85134292	85134492	+	721.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	39315.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.83	5.79	10.84	4.02	8.59	12.23	5.65	7.49	11.8	12.05	7.54	8.14
Merged-chr1-40322754-3	chr1	40322656	40322856	+	721.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1833.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	6.86	6.79	9.13	2.41	10.23	11.92	5.98	14.36	12.39	12.05	11.05	10.96
Merged-chr4-133675892-3	chr4	133675780	133675980	+	721.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2714.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.46	11.57	7.99	11.26	8.18	10.03	8.97	12.93	11.01	8.54	12.06	8.14
Merged-chr6-83653670-3	chr6	83653587	83653787	+	721.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016751, intron 3 of 6)	MTEa|LTR|ERVL-MaLR	2429.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	10.09	1.51	7.99	8.85	7.77	3.76	9.63	25.6	7.67	9.04	13.57	11.9
Merged-chr1-152597606-1	chr1	152597506	152597706	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	27611.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.46	3.52	1.14	2.41	13.5	12.54	4.98	1.71	4.52	9.54	3.52	1.57
Merged-chr1-155476458-1	chr1	155476358	155476558	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50653.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	1.21	2.26	9.13	19.71	6.55	5.02	2.99	6.76	7.08	13.05	9.55	3.76
Merged-chr9-50540346-1	chr9	50540246	50540446	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359610, intron 6 of 10)	intron (NM_001359610, intron 6 of 10)	-11705.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	6.86	4.78	2.28	10.05	9.0	3.76	7.64	7.4	5.51	6.53	10.55	0.63
Merged-chr1-39504393-1	chr1	39504293	39504493	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-25638.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	3.23	6.29	3.99	1.21	0.82	9.41	1.66	5.13	5.9	8.03	9.04	3.13
Merged-chr15-25398056-1	chr15	25397956	25398156	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	15708.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.48	10.31	6.85	6.44	0.82	0.94	0.33	1.07	1.38	1.0	4.02	1.25
Merged-chr5-96851687-1	chr5	96851587	96851787	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	58302.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.44	5.79	1.71	4.83	8.18	9.41	4.98	7.6	5.11	11.05	2.51	0.31
Merged-chr16-91852407-1	chr16	91852307	91852507	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79223.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.44	3.77	1.14	4.42	9.82	9.41	4.98	5.36	4.92	9.04	7.54	3.76
Merged-chrX-167164952-2	chrX	167164861	167165061	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44257.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	7.67	8.3	9.13	3.22	6.14	5.96	5.98	9.03	6.1	1.51	2.01	5.01
Merged-chr9-99390650-1	chr9	99390550	99390750	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008624, intron 4 of 5)	intron (NM_008624, intron 4 of 5)	-32120.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.23	2.52	5.7	7.24	4.09	4.7	7.31	6.06	3.74	7.03	5.53	5.95
Merged-chr7-115132589-1	chr7	115132489	115132689	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181315.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.23	2.77	4.56	5.63	9.82	6.27	6.64	9.56	2.16	0.5	2.51	2.82
Merged-chr10-127744785-1	chr10	127744685	127744885	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5247.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	4.44	5.03	0.0	3.62	6.14	9.09	2.33	4.04	8.46	10.04	10.55	8.77
Merged-chr5-64093536-2	chr5	64093437	64093637	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025700, intron 1 of 13)	intron (NM_025700, intron 1 of 13)	598.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	11.71	3.77	10.27	5.63	9.41	5.02	5.31	10.37	2.36	6.53	11.56	9.71
Merged-chr17-15467853-2	chr17	15467754	15467954	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30422.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	7.67	6.54	9.7	1.21	4.5	5.02	5.98	5.55	7.28	4.02	7.03	5.01
Merged-chr14-69238400-2	chr14	69238276	69238476	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46727.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	5.25	6.29	5.7	5.63	8.18	6.59	0.0	7.99	8.65	8.54	9.04	7.83
Merged-chr19-11803617-1	chr19	11803517	11803717	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	15786.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	3.63	3.02	5.13	4.02	3.27	1.25	5.65	6.79	7.08	5.52	2.01	2.82
Merged-chr10-16995154-1	chr10	16995054	16995254	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	100628.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.25	3.02	4.56	3.22	6.14	3.45	4.65	4.71	11.6	12.55	4.52	2.51
Merged-chr18-66002150-1	chr18	66002050	66002250	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027400, intron 1 of 13)	intron (NM_027400, intron 1 of 13)	485.0	NM_027400	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	4.04	2.52	4.56	2.41	1.23	1.57	9.63	5.47	4.13	5.02	3.52	3.45
Merged-chr16-49500922-1	chr16	49500822	49501022	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198372.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	5.65	2.01	1.14	3.62	2.86	1.88	9.3	2.55	3.54	0.5	4.02	5.33
Merged-chr4-126310081-2	chr4	126309984	126310184	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199473, intron 3 of 3)	intron (NM_199473, intron 3 of 3)	11619.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	11.31	6.54	14.83	5.63	3.27	7.21	6.31	4.77	7.47	13.56	10.55	5.01
Merged-chr1-180604785-1	chr1	180604685	180604885	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17584.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.81	0.0	1.14	1.61	2.45	7.53	7.31	6.48	1.57	2.01	6.03	0.63
Merged-chr3-79910939-2	chr3	79910829	79911029	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133187, intron 2 of 3)	MIR|SINE|MIR	24999.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	2.02	4.28	4.56	4.83	7.36	5.96	8.97	18.59	8.06	6.03	10.55	6.27
Merged-chr1-170565083-1	chr1	170564983	170565183	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	G-rich|Low_complexity|Low_complexity	-7973.0	NR_154593	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	1.51	0.0	1.61	9.0	3.76	2.66	9.53	9.64	10.54	3.01	4.39
Merged-chr8-105290242-1	chr8	105290142	105290342	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-714.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	7.27	4.28	2.85	0.0	7.77	2.51	0.66	6.14	6.29	7.53	17.59	4.07
Merged-chr1-58723372-1	chr1	58723272	58723472	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	ID_B1|SINE|B4	-7180.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.23	3.02	3.99	0.8	2.86	10.03	1.33	2.3	4.52	2.51	2.01	2.51
Merged-chr19-55265456-1	chr19	55265356	55265556	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	12087.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	4.44	2.52	3.99	6.03	2.45	8.78	1.66	6.25	7.87	1.51	4.52	3.45
Merged-chr1-58586659-1	chr1	58586559	58586759	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172513)	promoter-TSS (NM_172513)	262.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	9.29	9.31	13.12	3.22	8.59	9.41	7.64	4.15	7.67	9.04	10.05	6.89
Merged-chr12-26451377-1	chr12	26451277	26451477	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	5075.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.4	8.05	0.0	2.41	4.5	4.7	4.32	2.92	10.42	11.55	9.04	3.76
Merged-chr16-87507871-1	chr16	87507771	87507971	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11798.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0.4	2.52	0.0	2.82	3.27	3.76	4.32	9.9	2.36	3.51	3.52	3.45
Merged-chr5-117115176-1	chr5	117115076	117115276	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	817.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	2.02	4.02	3.42	0.8	2.05	5.02	6.98	3.25	4.13	2.51	3.52	9.71
Merged-chr11-70018445-1	chr11	70018345	70018545	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-160.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	2.42	2.77	3.99	2.01	3.27	7.21	0.66	1.99	7.87	7.03	5.02	3.76
Merged-chr12-5223619-2	chr12	5223546	5223746	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152036.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.44	2.52	4.56	3.62	5.32	2.2	3.99	7.29	3.74	3.01	10.05	10.96
Merged-chr19-42744378-1	chr19	42744278	42744478	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029011, intron 4 of 15)	intron (NM_029011, intron 4 of 15)	8397.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	3.23	1.26	2.28	4.42	2.05	2.82	3.99	1.29	9.83	5.52	22.61	9.08
Merged-chrX-139986843-1	chrX	139986743	139986943	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153586, intron 4 of 6)	L1M4|LINE|L1	11752.0	NM_153586	237073.0	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding	2.83	5.79	4.56	4.83	7.36	8.15	2.66	7.68	5.51	3.01	4.52	7.52
Merged-chr3-154305592-3	chr3	154305508	154305708	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010713)	TTS (NM_010713)	24952.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	5.65	6.04	11.41	11.66	12.27	9.41	13.62	28.82	12.39	5.02	8.54	5.33
Merged-chr5-135191848-3	chr5	135191751	135191951	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	4528.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	2.42	7.8	9.7	4.02	6.55	8.47	2.99	6.93	13.96	5.02	10.05	13.47
Merged-chr11-3178439-2	chr11	3178343	3178543	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 5 of 32)	B2_Mm2|SINE|B2	15020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	8.08	9.56	2.28	9.65	12.68	2.82	7.31	2.97	0.0	0.0	0.0	0.0
Merged-chrX-56836055-1	chrX	56835955	56836155	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13730.0	NM_177293	320923.0	Mm.186745	NM_177293	ENSMUSG00000067878	Map7d3	4933424A10Rik|Mtap7d3	MAP7 domain containing 3	protein-coding	6.06	1.01	0.57	3.62	2.05	6.27	2.66	7.21	9.24	6.03	5.53	2.19
Merged-chr1-88611023-1	chr1	88610923	88611123	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	59506.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	2.02	5.79	10.84	13.27	0.0	1.88	0.0	0.0	0.79	1.0	4.52	0.0
Merged-chr17-81679835-1	chr17	81679735	81679935	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	58552.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.04	1.01	7.99	2.41	4.5	4.7	5.65	7.54	1.38	2.51	6.03	0.63
Merged-chr13-107955932-1	chr13	107955832	107956032	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65868.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.21	3.02	1.71	2.41	6.95	7.21	6.64	5.92	7.08	9.54	11.56	5.01
Merged-chr5-16293407-1	chr5	16293307	16293507	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110843, intron 10 of 38)	intron (NM_001110843, intron 10 of 38)	-260088.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	1.62	2.01	2.28	9.65	5.32	5.64	5.31	5.58	7.47	6.03	6.03	2.19
Merged-chr3-9709085-1	chr3	9708985	9709185	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-99000.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.85	4.53	2.28	3.62	12.68	4.7	3.32	9.62	5.51	11.05	6.03	5.33
Merged-chr13-33005868-2	chr13	33005751	33005951	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009256, intron 1 of 6)	intron (NM_009256, intron 1 of 6)	1310.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	4.85	4.53	4.56	1.61	11.45	5.96	4.98	6.17	9.64	1.51	13.57	7.83
Merged-chr17-32403630-1	chr17	32403530	32403730	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347343)	promoter-TSS (NM_001347343)	-48.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	3.63	2.26	2.28	1.21	14.73	9.41	1.99	2.19	7.67	5.02	4.52	6.58
Merged-chr1-192101552-2	chr1	192101442	192101642	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290279, exon 10 of 10)	3' UTR (NM_001290279, exon 10 of 10)	-8943.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	5.65	6.54	19.97	10.05	0.82	2.2	4.32	5.58	6.49	6.53	12.56	8.46
Merged-chr10-11350376-1	chr10	11350276	11350476	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6931.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	1.62	5.03	2.28	3.62	6.55	5.33	2.99	7.35	4.33	0.0	1.51	2.82
Merged-chr5-114699903-1	chr5	114699803	114700003	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	IAPLTR2a2_Mm|LTR|ERVK	-7876.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	14.94	9.81	18.25	6.44	11.05	9.41	1.66	2.69	7.67	9.54	6.53	10.34
Merged-chr5-122763653-1	chr5	122763553	122763753	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199676, intron 2 of 16)	intron (NM_001199676, intron 2 of 16)	15757.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	2.02	9.56	2.28	2.41	5.73	11.29	3.99	11.07	3.34	0.5	2.51	0.63
Merged-chr15-59146262-2	chr15	59146158	59146358	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64232.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	2.42	4.78	2.28	6.84	16.36	17.25	9.63	10.37	14.55	8.54	10.05	12.53
Merged-chr14-51052468-1	chr14	51052368	51052568	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2305.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	0.0	8.8	1.14	4.02	9.0	1.88	2.66	5.64	4.52	3.51	6.53	1.25
Merged-chr17-24470849-1	chr17	24470749	24470949	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025954, exon 1 of 2)	exon (NM_025954, exon 1 of 2)	376.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	7.67	4.78	2.85	5.63	4.91	9.09	3.65	8.05	12.19	4.52	17.08	10.65
Merged-chr10-121463646-2	chr10	121463519	121463719	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	RMER19B|LTR|ERVK	12631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.42	6.29	15.4	5.23	4.09	5.33	5.31	4.68	2.16	2.51	6.53	5.64
Merged-chr12-8520851-2	chr12	8520740	8520940	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18726.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.0	3.02	1.14	2.01	5.32	3.76	5.98	7.07	6.49	3.51	10.05	8.14
Merged-chr18-74962287-3	chr18	74962117	74962317	+	720.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-954.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	5.65	2.52	9.13	3.22	6.95	4.08	2.99	6.36	7.28	8.54	9.55	9.4
Merged-chr4-11550309-3	chr4	11550214	11550414	+	720.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347055, exon 24 of 24)	3' UTR (NM_001347055, exon 24 of 24)	-8606.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	13.73	7.04	7.99	8.85	15.96	8.78	3.65	17.55	15.93	10.04	16.58	10.02
Merged-chr4-149954293-2	chr4	149954185	149954385	+	720.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029035, intron 1 of 2)	CpG	721.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.23	4.28	3.42	4.02	9.0	4.7	7.97	7.07	11.41	13.05	10.55	10.65
Merged-chr6-49269404-3	chr6	49269301	49269501	+	720.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5349.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	12.92	5.03	16.54	8.04	18.82	14.11	7.97	11.64	10.23	8.03	13.06	8.77
Merged-chr1-78536943-3	chr1	78536851	78537051	+	720.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	25891.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	6.46	11.32	13.69	7.64	14.73	10.66	7.64	9.73	7.67	3.51	19.6	6.89
Merged-chr19-5038297-3	chr19	5038168	5038368	+	720.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	-558.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	4.44	7.8	12.55	5.23	15.14	18.5	5.98	8.52	13.37	6.53	8.04	5.64
Merged-chr1-36566574-2	chr1	36566419	36566619	+	720.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-8138.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.44	5.03	2.85	1.61	6.14	3.76	5.31	6.93	2.36	8.54	5.02	3.13
Merged-chr4-101159616-2	chr4	101159515	101159715	+	720.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 17 of 24)	intron (NM_146145, intron 17 of 24)	90577.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.81	2.52	2.85	14.48	8.18	5.02	9.3	11.55	10.82	3.01	8.54	9.08
Merged-chr4-133730393-2	chr4	133730280	133730480	+	720.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-13272.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	11.31	7.55	7.99	16.09	6.14	7.84	4.32	2.44	19.28	11.55	27.64	7.21
Merged-chr3-146093496-2	chr3	146093402	146093602	+	720.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172864, intron 6 of 22)	intron (NM_172864, intron 6 of 22)	14534.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	10.09	5.53	9.13	7.24	8.59	11.6	8.64	16.01	3.93	0.0	7.54	7.21
Merged-chr4-42933851-2	chr4	42933748	42933948	+	720.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001346526, exon 3 of 9)	exon (NM_001346526, exon 3 of 9)	-16019.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	9.69	2.52	6.28	10.46	9.0	8.15	13.29	8.5	3.15	1.51	6.53	5.01
Merged-chr18-46962858-2	chr18	46962773	46962973	+	720.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	3997.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	10.5	3.02	1.71	8.85	11.45	10.66	12.62	6.98	9.44	3.01	12.06	4.39
Merged-chr7-24610725-2	chr7	24610653	24610853	+	720.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-575.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	4.04	5.03	8.56	1.61	5.32	10.03	8.97	9.17	3.93	10.04	3.01	10.34
Merged-chr9-45102338-2	chr9	45102244	45102444	+	720.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15532.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	3.63	10.06	10.84	6.84	1.64	16.62	7.64	6.25	1.38	1.0	1.51	0.63
Merged-chr15-99497265-3	chr15	99497165	99497365	+	720.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-22535.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	13.33	9.81	7.42	2.41	4.5	7.84	0.66	4.96	26.36	10.54	5.53	19.74
Merged-chr17-84106587-2	chr17	84106454	84106654	+	720.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	27894.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	4.44	1.51	5.13	3.62	3.68	14.74	5.98	5.94	7.08	14.06	5.02	5.01
Merged-chr13-81147991-3	chr13	81147897	81148097	+	720.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	183923.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	11.31	8.05	7.99	16.49	18.0	7.53	17.94	15.48	6.49	11.55	11.05	7.83
Merged-chr17-68223412-3	chr17	68223349	68223549	+	720.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50348.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	2.83	6.04	12.55	10.46	3.27	6.59	10.3	8.41	8.46	15.57	7.54	7.21
Merged-chr10-88327631-2	chr10	88327540	88327740	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 5 of 6)	intron (NM_027878, intron 5 of 6)	29435.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.63	6.04	3.99	4.02	3.68	11.29	3.32	8.36	7.67	8.54	12.06	6.27
Merged-chr19-34474894-2	chr19	34474871	34475071	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009890, exon 1 of 1)	exon (NM_009890, exon 1 of 1)	164.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	5.25	9.31	1.71	3.22	4.09	5.96	5.65	3.87	4.92	12.55	4.52	3.45
Merged-chr7-75880888-2	chr7	75880788	75880988	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32550.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.44	9.06	6.85	4.02	11.45	6.27	8.64	5.55	10.62	10.04	18.09	11.9
Merged-chr3-54601776-2	chr3	54601680	54601880	+	720.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91035.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	15.34	8.8	9.13	20.91	0.0	0.63	0.0	0.03	12.0	11.05	11.05	9.08
Merged-chr4-9671354-2	chr4	9671211	9671411	+	720.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1967.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.85	2.77	3.99	9.25	6.95	1.25	3.32	13.51	6.69	6.53	2.51	2.51
Merged-chr5-143466118-2	chr5	143465989	143466189	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 1 of 14)	intron (NM_144915, intron 1 of 14)	1596.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	13.33	4.28	7.99	10.05	8.18	4.39	4.98	7.99	4.52	7.03	8.04	2.19
Merged-chr1-91168160-1	chr1	91168060	91168260	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033408, intron 13 of 15)	intron (NM_001033408, intron 13 of 15)	-11662.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	6.46	8.55	2.85	5.63	8.18	6.9	5.65	12.81	1.57	4.02	4.52	1.57
Merged-chr16-5255208-1	chr16	5255108	5255308	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	748.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.85	5.53	2.85	6.44	4.5	5.02	4.65	4.65	4.13	3.51	3.01	5.33
Merged-chr9-84466941-1	chr9	84466841	84467041	+	720.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-307457.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.04	0.5	1.71	0.4	3.68	4.7	2.99	1.4	8.06	13.05	22.61	15.35
Merged-chr8-40852107-1	chr8	40852007	40852207	+	720.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-10260.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.42	0.0	0.0	0.4	0.82	0.0	2.66	0.42	16.33	10.54	15.58	4.39
Merged-chr13-110626551-1	chr13	110626451	110626651	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	231507.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.62	2.01	0.0	0.0	9.82	11.92	6.31	6.64	5.31	6.53	7.03	5.33
Merged-chr7-46957983-1	chr7	46957883	46958083	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040695, intron 1 of 11)	intron (NM_001040695, intron 1 of 11)	535.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	2.42	2.26	4.56	5.63	2.05	8.47	9.97	6.28	8.85	6.53	5.53	5.33
Merged-chr17-27051744-3	chr17	27051622	27051822	+	720.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5582.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	15.34	9.56	3.42	8.85	10.64	10.66	6.64	11.47	6.69	9.04	9.04	5.95
Merged-chr13-97203828-3	chr13	97203735	97203935	+	720.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5478.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	8.88	6.54	6.28	9.25	4.5	6.9	7.31	7.51	4.92	12.55	19.6	8.77
Merged-chr4-114997226-2	chr4	114997120	114997320	+	720.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2898.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	1.62	0.25	0.0	4.42	7.77	10.03	1.66	7.09	9.05	19.58	12.56	3.76
Merged-chr5-66079948-3	chr5	66079840	66080040	+	720.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18239.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	10.5	6.04	11.41	7.24	14.73	9.09	6.31	7.43	18.69	11.55	30.65	9.4
Merged-chr1-152291042-1	chr1	152290942	152291142	+	720.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95640.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	5.65	5.03	5.7	3.22	10.23	11.29	6.98	6.62	10.23	6.53	6.03	2.82
Merged-chr14-106687579-1	chr14	106687479	106687679	+	720.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-201059.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.42	2.52	3.99	2.41	9.82	9.41	7.31	29.83	1.38	0.5	2.01	1.25
Merged-chr16-31883795-2	chr16	31883688	31883888	+	720.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013900, exon 4 of 16)	exon (NM_013900, exon 4 of 16)	4978.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	6.06	9.31	4.56	0.4	7.77	14.74	9.63	8.27	7.28	6.53	10.55	5.01
Merged-chr18-4948174-3	chr18	4948062	4948262	+	720.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-98427.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	12.52	6.04	12.55	8.85	9.0	3.76	9.3	10.04	6.88	9.54	14.07	10.96
Merged-chr18-49990449-2	chr18	49990362	49990562	+	720.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	11035.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	2.83	9.81	5.13	10.05	9.0	12.86	8.3	13.15	6.88	4.52	9.04	5.95
Merged-chr17-25941862-3	chr17	25941744	25941944	+	720.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001039038)	TTS (NM_001039038)	145.0	NM_001357592	14755.0	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	6.86	14.09	13.12	7.64	16.36	10.66	6.98	7.93	7.28	10.04	4.02	10.96
Merged-chr4-154961535-3	chr4	154961411	154961611	+	720.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010419, exon 3 of 3)	exon (NM_010419, exon 3 of 3)	588.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	5.25	11.32	7.42	3.22	7.77	9.72	6.31	10.63	11.8	6.53	5.02	12.84
Merged-chr8-23109412-2	chr8	23109312	23109512	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102385, intron 21 of 45)	intron (NR_102385, intron 21 of 45)	-29618.0	NM_001310436	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	5.25	3.77	2.85	10.46	5.73	2.2	4.98	6.48	12.59	9.54	7.54	1.88
Merged-chr13-24638704-1	chr13	24638604	24638804	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029679)	promoter-TSS (NM_029679)	56.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	5.25	4.53	10.84	7.64	6.55	3.14	5.98	8.02	4.72	3.51	3.52	3.76
Merged-chr15-99469237-3	chr15	99469142	99469342	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029236)	TTS (NM_029236)	5488.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	13.33	8.05	3.42	6.84	9.82	16.31	6.98	7.01	11.21	8.54	17.59	9.4
Merged-chr2-121294233-1	chr2	121294133	121294333	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032393, intron 2 of 6)	intron (NM_032393, intron 2 of 6)	-1221.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	1.21	3.52	2.28	0.0	8.18	6.59	2.66	5.33	2.75	6.03	2.01	0.94
Merged-chr7-82867761-3	chr7	82867691	82867891	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175366, exon 1 of 2)	exon (NM_175366, exon 1 of 2)	458.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	10.09	11.07	9.7	7.24	10.23	7.21	7.64	7.93	9.44	6.03	11.05	3.13
Merged-chr12-100166397-3	chr12	100166310	100166510	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-6757.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	5.65	9.56	15.97	4.83	5.73	9.09	8.64	6.93	6.29	8.03	10.55	7.21
Merged-chr10-87854583-2	chr10	87854461	87854661	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3704.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.65	8.8	5.7	4.83	4.5	8.15	2.66	12.39	6.1	13.05	8.04	10.02
Merged-chr9-50670884-1	chr9	50670784	50670984	+	720.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178118, intron 17 of 19)	B3|SINE|B2	-11104.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	2.42	5.79	5.7	0.8	6.14	7.53	3.65	3.87	9.64	6.53	18.59	7.21
Merged-chr9-116058638-3	chr9	116058541	116058741	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	116722.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	10.9	7.29	3.42	10.05	9.0	12.86	14.62	15.73	6.29	8.54	10.55	8.77
Merged-chr5-33033416-3	chr5	33033350	33033550	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14634.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	8.48	11.82	5.7	4.83	0.41	14.42	5.31	9.93	5.31	19.08	12.06	11.59
Merged-chr5-136186920-2	chr5	136186820	136187020	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025774, intron 5 of 5)	intron (NM_025774, intron 5 of 5)	12034.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	7.27	5.03	10.27	5.23	10.64	10.66	7.31	2.92	10.62	6.53	10.05	1.88
Merged-chr10-43001309-1	chr10	43001209	43001409	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10147.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	4.44	4.02	4.56	5.23	9.0	6.59	4.65	7.54	5.11	3.51	12.56	1.88
Merged-chr18-80932737-3	chr18	80932633	80932833	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015805, intron 1 of 28)	MIR|SINE|MIR	1325.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	6.86	7.29	9.13	2.41	11.45	25.4	10.63	9.08	22.03	10.04	23.11	5.64
Merged-chr1-53873869-2	chr1	53873769	53873969	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	24445.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	9.29	7.04	4.56	3.22	6.95	4.39	4.98	10.54	11.6	12.05	2.51	5.01
Merged-chr4-137072787-2	chr4	137072695	137072895	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24100.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	6.06	9.56	3.99	8.85	6.95	9.09	4.98	9.67	8.06	5.52	7.54	8.14
Merged-chr8-43367882-2	chr8	43367766	43367966	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60857.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	1.62	0.5	1.14	0.0	1.64	7.21	5.65	11.05	8.65	14.56	22.61	11.9
Merged-chr8-31237439-1	chr8	31237339	31237539	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001286424, exon 4 of 4)	3' UTR (NM_001286424, exon 4 of 4)	50108.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	7.67	6.04	13.69	7.64	1.64	10.35	5.31	7.46	5.11	0.0	3.52	0.63
Merged-chrX-36113290-2	chrX	36113182	36113382	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	L2b|LINE|L2	1174.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	5.65	8.05	5.13	4.02	10.64	14.42	3.99	2.41	14.95	12.05	8.54	1.57
Merged-chr17-83631993-3	chr17	83631889	83632089	+	720.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-94.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	13.33	8.55	11.98	6.44	6.55	13.8	5.31	11.13	10.03	8.03	6.53	7.52
Merged-chr7-125472112-3	chr7	125472031	125472231	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026330, exon 3 of 8)	exon (NM_026330, exon 3 of 8)	19411.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.44	11.57	3.99	8.85	6.55	5.64	8.97	8.78	12.59	10.54	11.56	10.65
Merged-chr13-20311768-3	chr13	20311635	20311835	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-161255.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.67	6.29	12.55	8.85	12.27	10.66	9.63	10.35	4.92	3.51	7.03	6.89
Merged-chr1-172143767-3	chr1	172143674	172143874	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4241.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	6.06	5.79	11.41	8.85	13.91	6.27	6.31	7.82	18.69	14.56	19.6	12.22
Merged-chr9-121348218-3	chr9	121348113	121348313	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-18745.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	9.29	7.04	8.56	2.41	3.68	10.03	9.97	8.02	6.88	8.03	8.04	6.58
Merged-chr13-45416838-2	chr13	45416743	45416943	+	720.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.83	12.07	4.56	5.63	8.59	6.27	2.33	2.5	1.38	5.02	4.02	2.82
Merged-chr4-102577648-4	chr4	102577598	102577798	+	720.395813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	7638.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	9.69	8.05	7.99	4.02	4.5	18.19	7.64	3.87	4.72	9.54	4.52	3.13
Merged-chr2-140783141-3	chr2	140783041	140783241	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	-111665.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	7.27	5.79	6.85	7.64	8.59	14.42	10.3	13.65	9.83	10.54	11.56	8.46
Merged-chr11-121704452-3	chr11	121704321	121704521	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1994.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.46	9.56	4.56	6.84	14.32	8.78	4.65	4.15	12.78	10.04	6.53	5.33
Merged-chr13-100490670-3	chr13	100490585	100490785	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360706, intron 1 of 16)	intron (NM_001360706, intron 1 of 16)	1709.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	10.9	7.04	6.85	11.66	6.55	7.21	3.65	6.22	9.64	5.02	8.54	4.07
Merged-chr4-135067312-3	chr4	135067209	135067409	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53336.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	12.52	13.83	9.13	8.85	7.77	10.66	3.32	5.97	14.36	13.56	8.04	11.59
Merged-chr8-76900539-4	chr8	76900416	76900616	+	720.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028579, exon 1 of 2)	non-coding (NR_028579, exon 1 of 2)	105.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	1.21	6.54	1.14	6.03	4.09	7.84	11.96	8.3	6.88	13.56	11.05	9.71
Merged-chr7-29523816-2	chr7	29523702	29523902	+	720.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18342.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	8.88	9.31	6.85	10.46	13.91	10.03	5.65	9.36	4.92	7.53	5.02	6.89
Merged-chr11-49101686-3	chr11	49101594	49101794	+	720.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12063.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	7.67	6.04	10.84	9.25	7.77	9.72	12.62	4.57	11.01	23.6	7.54	11.9
Merged-chr11-63130711-2	chr11	63130595	63130795	+	720.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	-762.0	NM_008885	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	2.42	2.26	3.42	0.8	4.5	5.02	7.31	9.81	3.93	3.51	10.05	7.52
Merged-chr13-88765872-2	chr13	88765773	88765973	+	720.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-55599.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	1.21	8.3	13.12	6.44	1.64	2.51	2.66	1.85	7.87	2.51	11.05	9.71
Merged-chr7-100487528-2	chr7	100487438	100487638	+	720.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5820.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	11.71	7.04	9.13	4.02	9.0	8.47	9.63	12.62	6.49	1.0	12.06	5.64
Merged-chr5-29786350-2	chr5	29786252	29786452	+	720.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001037940, exon 10 of 10)	3' UTR (NM_001037940, exon 10 of 10)	-50416.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	8.88	7.04	13.12	9.65	11.86	13.8	13.62	8.33	4.92	3.01	9.04	6.27
Merged-chr17-36824234-2	chr17	36824119	36824319	+	720.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	12044.0	NM_201611	399549.0	Mm.329034	NM_201611	ENSMUSG00000037130	H2-M10.6	-	histocompatibility 2, M region locus 10.6	protein-coding	1.62	5.03	3.42	1.61	7.36	9.09	8.97	8.92	11.8	12.05	10.55	7.21
Merged-chr14-65332121-3	chr14	65332030	65332230	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26546.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.65	5.28	17.68	8.04	9.41	13.8	4.65	16.04	5.7	11.55	20.1	3.45
Merged-chr13-4934822-3	chr13	4934727	4934927	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-325663.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.04	4.02	22.25	12.07	7.36	13.48	14.28	21.22	9.44	4.52	10.05	9.4
Merged-chr6-124311713-1	chr6	124311613	124311813	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 5 of 16)	intron (NM_001170395, intron 5 of 16)	7062.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.04	0.75	6.85	0.0	6.14	5.96	3.65	7.68	4.33	8.03	0.0	4.39
Merged-chr7-24856696-1	chr7	24856596	24856796	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12995.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	6.46	3.52	2.28	8.04	13.91	9.41	6.98	7.15	5.51	11.05	8.54	1.25
Merged-chr1-144775480-1	chr1	144775380	144775580	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022881)	promoter-TSS (NM_022881)	-53.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	1.62	1.51	2.28	4.02	5.73	6.59	8.64	6.39	1.57	2.01	6.03	3.13
Merged-chr8-80961422-3	chr8	80961312	80961512	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	53494.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	8.48	6.29	7.99	4.42	6.14	10.03	3.99	11.33	8.65	9.54	14.57	9.08
Merged-chr2-118905904-1	chr2	118905804	118906004	+	720.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	4289.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.83	3.52	4.56	4.02	2.05	5.64	3.32	1.12	8.06	10.04	7.54	7.52
Merged-chr5-36560729-1	chr5	36560629	36560829	+	720.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	21668.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.8	12.55	13.06	6.58
Merged-chr4-3650560-1	chr4	3650460	3650660	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5946.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	2.02	2.52	0.0	3.22	7.77	5.02	4.98	6.11	6.69	3.51	5.53	4.39
Merged-chr15-84190084-3	chr15	84189992	84190192	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_054088)	TTS (NM_054088)	-2141.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	10.09	8.8	9.7	7.64	6.55	10.98	7.97	5.55	21.83	13.56	15.58	13.78
Merged-chr17-6008012-5	chr17	6007929	6008129	+	720.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001113351, exon 7 of 25)	exon (NM_001113351, exon 7 of 25)	449.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	8.88	6.29	6.85	13.27	13.09	2.2	6.31	5.3	4.13	4.52	4.52	7.21
Merged-chr2-33986587-3	chr2	33986489	33986689	+	720.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98643.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	11.31	5.28	7.99	12.47	11.45	9.41	4.65	6.95	21.24	10.54	28.14	9.4
Merged-chr7-133050845-2	chr7	133050723	133050923	+	720.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	31037.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.25	1.76	9.13	4.02	12.68	10.98	6.31	16.35	14.55	9.54	6.53	4.07
Merged-chr8-108731057-3	chr8	108730998	108731198	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	16454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	8.48	9.56	9.13	11.66	6.14	5.64	7.64	9.64	4.52	7.53	6.53	6.27
Merged-chr15-8665445-3	chr15	8665342	8665542	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	T-rich|Low_complexity|Low_complexity	45365.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	10.09	9.81	7.99	5.63	12.68	5.64	6.31	7.04	16.72	11.05	8.54	11.28
Merged-chr15-81594413-2	chr15	81594321	81594521	+	720.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177821, intron 1 of 30)	intron (NM_177821, intron 1 of 30)	8207.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	6.86	3.77	7.42	4.42	7.77	10.98	4.98	9.81	8.65	5.02	10.55	11.28
Merged-chr9-123932560-2	chr9	123932470	123932670	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	36122.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	11.31	5.53	7.99	10.46	9.0	12.54	5.98	14.38	4.33	13.05	4.52	3.13
Merged-chr4-125090002-1	chr4	125089902	125090102	+	720.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151472, intron 3 of 7)	intron (NR_151472, intron 3 of 7)	4868.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	3.23	3.02	10.27	4.42	6.95	4.39	6.31	9.0	8.26	1.51	9.55	5.01
Merged-chr9-86592203-2	chr9	86592134	86592334	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20181.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	8.08	2.77	1.14	7.64	8.18	6.27	5.98	17.07	2.95	2.51	3.52	3.45
Merged-chr2-160176300-3	chr2	160176271	160176471	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151123.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.06	8.3	7.99	4.42	13.5	9.09	2.99	6.73	8.26	13.56	3.52	7.83
Merged-chr4-59546908-3	chr4	59546814	59547014	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2450.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	12.11	7.55	10.27	15.28	1.64	2.51	8.3	9.7	9.24	9.04	4.02	5.33
Merged-chr9-3018778-3	chr9	3018727	3018927	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	19916.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	9.69	1.76	7.99	4.42	8.18	7.84	4.32	34.15	9.64	12.55	11.56	15.35
Merged-chr15-27974774-3	chr15	27974662	27974862	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	51086.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	8.08	7.55	14.26	8.45	5.32	7.53	7.31	9.84	15.14	2.51	9.04	4.39
Merged-chr4-40774522-3	chr4	40774410	40774610	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16625.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	9.29	9.81	8.56	7.64	5.32	10.35	8.64	7.88	9.83	11.55	12.56	10.02
Merged-chr11-107011848-2	chr11	107011750	107011950	+	720.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12325.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.46	3.52	6.28	1.61	12.68	10.35	4.32	6.14	19.08	10.04	6.03	7.52
Merged-chr19-41071699-3	chr19	41071608	41071808	+	720.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153520, intron 2 of 5)	intron (NM_153520, intron 2 of 5)	5405.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	13.33	4.78	10.27	10.86	9.82	8.15	6.31	9.42	16.52	5.02	12.06	5.95
Merged-chr6-99670985-3	chr6	99670900	99671100	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4229.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	7.27	8.55	19.97	4.83	6.95	12.54	6.31	7.04	12.78	7.03	3.52	13.78
Merged-chr9-92207549-3	chr9	92207439	92207639	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195693, intron 5 of 6)	intron (NM_001195693, intron 5 of 6)	14603.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	4.04	7.04	1.14	10.86	4.91	7.53	8.3	9.08	6.49	15.06	17.08	6.89
Merged-chr15-62011928-3	chr15	62011834	62012034	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26052.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	9.69	6.79	9.13	10.46	16.77	7.53	5.31	17.61	9.64	12.55	12.06	5.95
Merged-chr5-134933022-3	chr5	134932789	134932989	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359536, intron 2 of 5)	intron (NM_001359536, intron 2 of 5)	365.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	5.25	3.02	4.56	1.61	2.86	3.45	2.33	1.85	4.92	6.03	2.51	2.19
Merged-chr9-9682532-2	chr9	9682462	9682662	+	720.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 17 of 20)	B4A|SINE|B4	-211869.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	2.42	3.02	5.13	2.41	6.14	7.21	5.65	11.41	10.62	7.53	14.57	9.4
Merged-chr14-122191168-2	chr14	122191080	122191280	+	720.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9486.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	5.65	5.53	4.56	9.25	10.64	11.29	9.3	9.39	3.74	9.04	7.54	6.27
Merged-chr10-81241080-2	chr10	81240949	81241149	+	720.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034895, intron 4 of 17)	intron (NM_001034895, intron 4 of 17)	7886.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	4.44	5.53	5.7	4.02	8.18	7.21	9.3	5.97	14.55	12.05	8.04	5.64
Merged-chr11-68555482-2	chr11	68555386	68555586	+	720.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146004)	promoter-TSS (NM_146004)	-700.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	8.88	3.02	7.99	14.88	9.0	10.66	8.64	8.94	5.51	3.01	5.53	10.34
Merged-chr5-142899382-2	chr5	142899402	142899602	+	720.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-4264.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	4.04	5.28	6.28	2.41	3.27	4.7	0.66	0.76	4.52	7.53	0.0	3.45
Merged-chr5-23887288-2	chr5	23887186	23887386	+	720.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19|LTR|ERVK	35053.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	1.21	3.02	1.14	4.83	4.91	8.78	7.64	9.25	10.42	8.03	5.02	6.27
Merged-chr2-5436168-3	chr2	5436057	5436257	+	720.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	56767.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	9.29	6.54	13.69	10.86	14.73	32.3	15.94	22.79	8.46	6.53	14.57	5.95
Merged-chr17-25984766-3	chr17	25984670	25984870	+	720.105591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347334, intron 1 of 11)	intron (NM_001347334, intron 1 of 11)	1026.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	12.11	6.04	17.11	6.84	13.91	16.93	5.65	5.05	22.82	10.04	16.58	14.1
Merged-chr11-18876189-3	chr11	18876200	18876400	+	720.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142669.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	5.25	5.53	6.28	4.02	2.05	7.84	7.31	2.44	5.51	3.51	3.01	2.82
Merged-chr11-106491609-3	chr11	106491512	106491712	+	720.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3816.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	11.31	5.79	9.7	11.66	6.95	6.27	4.32	6.67	17.31	19.58	14.57	10.02
Merged-chr13-96543563-1	chr13	96543463	96543663	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012048)	promoter-TSS (NM_012048)	828.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	5.65	6.54	6.85	5.23	4.5	6.27	10.3	6.03	5.31	10.04	8.54	7.52
Merged-chr8-124704600-1	chr8	124704500	124704700	+	720.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357357, intron 4 of 19)	intron (NM_001357357, intron 4 of 19)	17394.0	NM_001357357	234875.0	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	0.0	0.5	2.28	0.4	0.0	1.25	0.33	0.45	5.31	7.03	14.07	8.14
Merged-chr6-38861033-1	chr6	38860933	38861133	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	(GGA)n|Simple_repeat|Simple_repeat	15157.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	2.02	4.53	1.14	1.61	6.95	4.39	7.31	7.43	5.9	3.01	5.02	3.45
Merged-chr7-88285150-1	chr7	88285050	88285250	+	720.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7065.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.02	3.27	9.13	4.02	0.41	5.02	2.66	3.64	11.21	5.02	12.56	3.13
Merged-chr7-80995892-3	chr7	80995766	80995966	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178707, intron 1 of 9)	L2c|LINE|L2	2182.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	9.69	10.56	5.7	3.22	6.14	5.96	3.99	9.25	7.67	8.54	6.03	6.89
Merged-chr5-21139684-1	chr5	21139584	21139784	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36595.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.04	2.01	2.85	1.21	1.64	4.39	5.98	6.11	3.54	5.52	2.01	3.76
Merged-chr10-62865579-1	chr10	62865479	62865679	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21745.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	2.83	5.53	0.57	1.61	2.05	4.7	6.64	6.56	2.95	4.02	4.02	4.39
Merged-chr3-32427836-1	chr3	32427736	32427936	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8315.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	1.62	1.51	6.85	2.82	2.05	1.57	4.98	4.93	5.31	0.0	1.0	2.51
Merged-chr6-114660116-1	chr6	114660016	114660216	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	17019.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	2.42	4.02	1.71	2.82	2.45	2.51	5.98	9.2	0.0	3.51	4.02	0.63
Merged-chr19-10881008-2	chr19	10880815	10881015	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	828.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	1.62	5.53	3.99	0.4	7.77	10.35	3.65	2.75	4.52	3.51	3.52	1.88
Merged-chr18-39854045-1	chr18	39853945	39854145	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80548.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.44	9.31	2.85	3.22	2.45	5.96	1.66	6.9	8.85	8.03	12.06	5.64
Merged-chr15-26016520-2	chr15	26016421	26016621	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32155.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	7.67	6.79	15.97	6.44	5.32	11.6	4.32	14.44	10.62	13.56	10.55	11.9
Merged-chr2-79193996-1	chr2	79193896	79194096	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61430.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	1.21	2.52	0.0	8.45	7.77	6.27	16.61	21.25	4.92	6.53	14.57	4.07
Merged-chr16-70355086-1	chr16	70354986	70355186	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	Lx8|LINE|L1	41137.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.42	2.77	0.0	6.03	4.09	7.21	1.66	5.72	2.56	2.01	4.02	1.88
Merged-chr5-117182648-1	chr5	117182548	117182748	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	L1MB7|LINE|L1	49060.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.81	1.76	0.0	1.61	4.91	0.63	5.65	6.06	3.74	0.0	2.01	1.57
Merged-chr8-103580363-1	chr8	103580263	103580463	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-23436.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	1.62	2.52	0.57	0.0	5.73	7.53	3.65	6.45	2.16	8.03	6.53	5.01
Merged-chr10-121475345-2	chr10	121475240	121475440	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	910.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	13.33	7.29	4.56	3.62	6.55	6.27	8.97	11.1	7.08	12.55	9.55	2.82
Merged-chr2-91453424-2	chr2	91453316	91453516	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4115.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	14.54	7.8	15.97	11.26	5.73	7.84	5.31	14.69	5.7	10.54	7.03	11.28
Merged-chr4-133701227-2	chr4	133701118	133701318	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	15890.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	2.42	5.28	6.85	13.67	13.91	10.66	18.93	19.15	7.47	8.03	14.07	2.82
Merged-chr17-3157884-1	chr17	3157784	3157984	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	42912.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	6.46	2.52	1.14	2.41	3.27	4.39	1.33	2.89	1.77	3.01	1.51	1.88
Merged-chr2-132509438-1	chr2	132509338	132509538	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028286, intron 1 of 3)	intron (NR_028286, intron 1 of 3)	18710.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	2.42	1.51	6.28	6.44	3.68	7.21	1.99	6.45	3.74	1.0	3.52	6.27
Merged-chr8-125777986-1	chr8	125777886	125778086	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	RLTR26B_MM|LTR|ERVK	43783.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.4	0.75	5.7	0.0	9.82	3.45	5.31	6.9	1.77	4.52	10.55	3.45
Merged-chr15-58623663-1	chr15	58623563	58623763	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	199764.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.86	5.53	1.14	8.04	5.73	7.53	4.65	9.36	11.8	6.03	4.52	1.88
Merged-chr1-170973181-1	chr1	170973081	170973281	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077189, intron 1 of 7)	intron (NM_001077189, intron 1 of 7)	2890.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	2.02	0.75	5.7	3.62	2.05	3.76	3.32	10.21	5.31	4.52	9.04	1.88
Merged-chr19-24992345-1	chr19	24992245	24992445	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7184.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	2.02	1.26	0.57	0.4	4.09	4.39	5.98	6.22	2.75	1.51	1.0	1.25
Merged-chr2-157597392-3	chr2	157597292	157597492	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-31031.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	7.67	8.55	12.55	7.64	3.27	3.45	7.31	6.48	9.44	10.04	19.09	5.64
Merged-chr1-89455672-2	chr1	89455572	89455772	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	CpG	861.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	7.27	5.53	7.99	3.62	4.5	10.66	5.31	5.36	9.83	7.03	7.03	5.95
Merged-chrX-51461640-1	chrX	51461540	51461740	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077202, intron 3 of 4)	intron (NM_001077202, intron 3 of 4)	218837.0	NM_001290468	50786.0	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	3.23	0.0	6.85	2.01	4.5	4.39	5.65	14.64	4.13	5.02	2.01	1.88
Merged-chr9-45911052-1	chr9	45910952	45911152	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104055, intron 4 of 17)	intron (NR_104055, intron 4 of 17)	-4141.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	6.46	3.02	6.85	7.24	6.55	3.76	2.66	9.48	1.77	5.52	8.54	1.88
Merged-chr13-92609979-2	chr13	92609847	92610047	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1191.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	2.83	4.53	5.7	6.03	6.14	5.64	5.98	5.89	3.15	2.01	8.54	5.33
Merged-chr17-15068311-1	chr17	15068211	15068411	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15252.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	2.42	3.02	1.14	4.83	11.05	6.27	8.97	6.98	5.11	6.03	8.54	5.33
Merged-chr10-112835649-1	chr10	112835549	112835749	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-2103.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0.81	1.51	1.14	4.83	6.55	3.14	6.31	8.97	1.97	2.51	4.02	1.25
Merged-chr12-24786619-1	chr12	24786519	24786719	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-44980.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	1.62	4.28	6.28	6.44	2.45	0.63	5.31	6.03	1.38	0.5	2.01	3.13
Merged-chr14-20811345-1	chr14	20811245	20811445	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17106.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0.81	2.52	1.14	6.84	1.64	1.25	6.64	4.29	4.13	3.51	1.51	1.88
Merged-chr15-55280451-1	chr15	55280351	55280551	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27299.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.65	4.28	1.14	3.22	2.86	8.78	0.33	4.96	1.57	7.53	4.52	1.25
Merged-chr19-45117032-2	chr19	45116930	45117130	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33685.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	10.5	10.06	4.56	8.04	8.59	6.27	2.33	7.23	9.64	7.03	7.03	5.64
Merged-chr5-99210200-1	chr5	99210100	99210300	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	42727.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.88	10.82	1.71	0.0	4.09	2.82	0.0	1.88	3.93	6.03	3.52	1.57
Merged-chr15-98481627-3	chr15	98481529	98481729	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010679, intron 2 of 3)	intron (NM_010679, intron 2 of 3)	1054.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	10.9	3.52	6.85	11.26	10.64	10.35	4.98	9.79	7.87	11.55	18.09	6.89
Merged-chr17-30990418-1	chr17	30990318	30990518	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177465, intron 13 of 21)	intron (NM_177465, intron 13 of 21)	35735.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.81	0.5	1.14	0.0	8.59	9.09	3.32	6.76	2.16	2.01	6.03	3.76
Merged-chr19-9135005-1	chr19	9134905	9135105	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025610, intron 1 of 6)	intron (NM_025610, intron 1 of 6)	561.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	2.42	6.04	7.99	2.01	7.77	4.39	4.32	6.93	3.34	4.52	8.04	0.94
Merged-chr2-84637675-1	chr2	84637575	84637775	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	11805.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	2.82	2.45	1.88	2.33	1.65	1.57	4.02	3.52	4.07
Merged-chr13-41302856-1	chr13	41302756	41302956	+	720.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53012.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	4.04	4.28	0.0	3.22	1.64	4.39	0.33	3.53	10.23	2.51	13.57	2.82
Merged-chr5-5214733-3	chr5	5214649	5214849	+	719.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	51319.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.67	9.06	6.85	6.84	4.09	9.09	5.98	5.16	20.85	25.61	13.06	8.46
Merged-chr4-150626555-3	chr4	150626485	150626685	+	719.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25589.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	10.5	11.07	9.7	9.65	7.77	11.6	5.65	7.99	9.24	21.59	7.54	7.52
Merged-chr16-37994833-3	chr16	37994724	37994924	+	719.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153394, intron 8 of 9)	intron (NM_153394, intron 8 of 9)	-22499.0	NR_040565	75175.0	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	8.48	9.81	11.41	6.03	14.32	11.6	6.64	15.0	9.44	11.05	18.09	9.71
Merged-chr10-87890071-2	chr10	87889955	87890155	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	28944.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.67	2.01	4.56	10.05	6.95	4.7	6.98	12.79	7.67	9.54	6.53	9.4
Merged-chr1-82771386-2	chr1	82771320	82771520	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2964.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.25	2.52	4.56	16.49	6.95	12.86	7.64	22.12	10.42	9.04	5.53	8.14
Merged-chr2-101762690-2	chr2	101762588	101762788	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	35019.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.85	5.28	3.99	8.04	7.77	15.37	7.31	10.82	7.67	8.54	7.03	5.33
Merged-chr3-61413381-2	chr3	61413278	61413478	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48871.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	1.62	0.0	0.0	0.0	5.73	8.47	8.3	8.24	6.1	8.03	14.57	4.7
Merged-chr5-32748206-2	chr5	32748111	32748311	+	719.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-1869.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	8.48	6.79	3.99	7.24	5.73	7.84	6.98	11.1	9.05	6.03	5.02	8.14
Merged-chr3-8928964-2	chr3	8928869	8929069	+	719.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-5112.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	8.88	4.53	2.28	6.44	9.41	7.53	5.65	7.04	9.24	3.01	4.52	7.83
Merged-chr18-60982164-3	chr18	60982107	60982307	+	719.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	18653.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	11.31	7.29	10.27	2.01	6.95	12.54	8.97	6.7	11.6	5.52	12.56	6.89
Merged-chr9-35559489-3	chr9	35559406	35559606	+	719.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023292, exon 2 of 5)	5' UTR (NM_023292, exon 2 of 5)	946.0	NM_023292	67049.0	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	6.86	9.06	6.85	16.89	11.05	11.6	8.3	13.09	9.64	10.04	13.57	2.82
Merged-chr12-21426726-2	chr12	21426605	21426805	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9269.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0.81	6.54	7.99	5.63	4.5	10.66	8.64	12.48	4.52	4.52	10.05	5.95
Merged-chr1-80335260-2	chr1	80335148	80335348	+	719.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	5442.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.23	0.25	2.28	0.4	12.27	6.27	9.3	10.77	7.47	6.03	1.0	8.46
Merged-chrUn_JH584304-63872-1	chrUn_JH584304	63772	63972	+	719.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-4183.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.8	18.58	9.55	17.86
Merged-chr11-119126635-2	chr11	119126541	119126741	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27496.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	7.67	6.54	4.56	6.44	12.68	21.95	5.98	11.16	11.6	8.03	5.02	4.07
Merged-chr12-11338389-3	chr12	11338297	11338497	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	38510.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	14.13	9.81	10.84	7.64	2.05	5.96	11.29	7.43	9.44	11.05	6.53	5.95
Merged-chr10-118716548-3	chr10	118716452	118716652	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	152351.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.85	6.79	6.28	1.61	10.23	21.95	8.97	6.81	10.62	17.07	7.54	3.13
Merged-chr19-16064300-3	chr19	16064219	16064419	+	719.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68512.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	2.02	3.27	3.99	5.23	6.55	5.96	4.65	0.62	6.49	5.02	6.53	6.27
Merged-chr4-45285541-1	chr4	45285441	45285641	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081172, exon 16 of 16)	exon (NM_001081172, exon 16 of 16)	-11627.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	4.04	2.01	1.14	0.0	7.77	5.33	3.65	6.76	1.57	1.0	0.0	0.94
Merged-chr6-4948158-1	chr6	4948058	4948258	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	44838.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.42	0.75	1.71	4.02	5.32	5.02	8.64	9.7	3.34	2.51	1.0	1.88
Merged-chr7-118480486-1	chr7	118480386	118480586	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11489.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.65	3.77	11.41	7.64	5.73	8.15	4.65	8.13	6.49	6.03	5.53	6.27
Merged-chr15-101772886-1	chr15	101772786	101772986	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9382.0	NR_033444	406222.0	Mm.359153	NM_001003669	ENSMUSG00000067596	Krt74	K74|Kb37	keratin 74	pseudo	3.23	6.79	6.85	6.84	5.73	6.27	4.98	6.53	6.1	7.03	7.03	4.07
Merged-chr8-33656223-1	chr8	33656123	33656323	+	719.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	B3|SINE|B2	2985.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.02	0.0	0.0	0.4	0.82	2.2	0.33	1.26	5.11	9.54	10.05	5.64
Merged-chr6-39274444-1	chr6	39274344	39274544	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-67671.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	2.42	2.26	4.56	3.22	9.82	1.88	7.64	7.6	5.11	7.03	3.52	3.45
Merged-chr6-120540085-1	chr6	120539985	120540185	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8786.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	7.27	4.53	1.71	6.44	8.18	8.78	6.98	18.98	6.69	10.04	10.55	5.33
Merged-chr2-112448675-1	chr2	112448575	112448775	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6350.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	2.42	2.77	3.42	1.61	9.41	7.53	7.97	7.79	7.28	6.03	12.56	5.01
Merged-chr10-88564280-1	chr10	88564180	88564380	+	719.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175418, intron 8 of 28)	intron (NM_175418, intron 8 of 28)	40872.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.04	2.77	5.13	0.8	4.09	1.88	1.99	4.93	11.41	3.01	9.04	8.46
Merged-chr4-40777278-2	chr4	40777149	40777349	+	719.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19364.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	10.5	3.52	3.42	2.82	9.41	10.35	3.32	2.97	6.49	12.55	5.02	8.46
Merged-chr4-86697074-2	chr4	86696957	86697157	+	719.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26998.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	6.46	4.53	2.28	6.03	19.64	10.03	3.99	6.79	13.37	7.53	9.04	6.89
Merged-chr16-10384435-2	chr16	10384305	10384505	+	719.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099275, intron 3 of 5)	intron (NM_001099275, intron 3 of 5)	11043.0	NM_001099275	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	4.44	7.8	7.99	10.05	9.41	4.7	6.98	4.85	3.93	7.53	6.03	3.76
Merged-chr13-23446785-3	chr13	23446672	23446872	+	719.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15755.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	3.63	7.8	11.41	2.01	8.18	10.66	8.3	9.84	7.28	11.05	5.53	7.83
Merged-chr4-3646196-3	chr4	3646088	3646288	+	719.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10318.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.23	11.07	3.99	14.48	6.14	7.53	9.63	10.51	8.65	4.52	10.05	5.64
Merged-chr14-21995679-1	chr14	21995579	21995779	+	719.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6078.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	2.02	4.02	7.42	1.61	8.59	7.84	7.31	8.24	6.29	7.03	6.53	4.07
Merged-chr17-78903390-2	chr17	78903306	78903506	+	719.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163625, intron 2 of 6)	intron (NM_001163625, intron 2 of 6)	3586.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	7.67	4.53	9.13	10.46	10.23	9.41	7.64	18.31	9.83	7.53	18.09	7.83
Merged-chr13-5824402-3	chr13	5824301	5824501	+	719.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33691.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.27	7.55	3.42	14.08	12.27	7.53	7.31	17.07	7.08	14.56	12.56	5.64
Merged-chr14-36952388-2	chr14	36952312	36952512	+	719.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	-11148.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.85	9.56	3.99	6.84	8.18	8.15	8.64	6.39	9.44	10.04	11.56	7.21
Merged-chr7-60004350-3	chr7	60004192	60004392	+	719.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	907.0	NM_001349694	20646.0	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N	small nuclear ribonucleoprotein N	protein-coding	6.06	3.02	5.13	10.05	9.82	4.08	3.65	8.41	6.49	10.54	5.53	11.9
Merged-chr5-139365443-2	chr5	139365298	139365498	+	719.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4347.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	5.65	4.78	6.28	2.82	11.86	3.45	7.31	5.83	11.6	12.05	6.03	10.65
Merged-chr5-76275160-2	chr5	76275067	76275267	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	28335.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	4.04	6.29	7.99	10.46	6.95	3.45	7.97	13.93	9.83	3.51	8.54	8.77
Merged-chr17-33092579-2	chr17	33092479	33092679	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024950, intron 1 of 3)	intron (NM_001024950, intron 1 of 3)	3212.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	5.65	6.04	1.71	9.25	14.32	9.41	8.3	7.49	9.05	3.01	9.04	5.95
Merged-chr2-129092370-2	chr2	129092269	129092469	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027192, intron 6 of 6)	intron (NM_027192, intron 6 of 6)	-8627.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	3.23	6.04	2.28	7.24	9.41	11.29	3.99	14.27	9.64	1.51	11.56	6.89
Merged-chr4-48242611-1	chr4	48242511	48242711	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355184, intron 2 of 10)	MER5A|DNA|hAT-Charlie	-29396.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	7.27	4.02	6.85	8.85	9.82	5.64	9.97	6.28	7.47	10.04	17.08	7.52
Merged-chr17-79347444-2	chr17	79347350	79347550	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026514, intron 1 of 1)	intron (NM_026514, intron 1 of 1)	7641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	3.23	1.01	3.42	3.22	1.64	7.21	4.65	14.69	12.39	9.54	9.55	8.46
Merged-chr10-94038724-1	chr10	94038624	94038824	+	719.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 1 of 20)	RSINE1|SINE|B4	2723.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.42	1.26	0.57	0.8	0.82	0.0	1.33	1.6	9.64	8.54	14.07	7.83
Merged-chr6-71931207-2	chr6	71931128	71931328	+	719.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	22175.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	8.08	5.28	2.28	12.47	9.41	1.25	9.3	11.07	1.97	1.0	9.55	6.27
Merged-chr1-151757290-1	chr1	151757190	151757390	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1916.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	6.06	4.28	3.42	3.22	7.36	2.51	8.97	7.15	6.88	7.03	2.51	5.64
Merged-chr4-98465639-2	chr4	98465533	98465733	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	54606.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	4.85	4.53	10.27	7.64	7.77	5.33	5.65	8.58	9.83	4.02	15.07	4.39
Merged-chr19-32495607-3	chr19	32495503	32495703	+	719.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9834.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	7.27	7.04	12.55	9.65	11.86	7.21	5.65	8.38	22.82	12.55	13.06	14.1
Merged-chr19-29369027-2	chr19	29368945	29369145	+	719.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1607.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	10.9	6.04	6.85	8.45	12.27	20.07	7.97	6.7	14.55	20.08	20.1	12.53
Merged-chr9-108640011-2	chr9	108639911	108640111	+	719.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	9397.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	5.25	4.02	10.27	5.63	9.82	5.64	8.97	12.67	7.67	9.04	15.07	3.13
Merged-chr18-83938369-2	chr18	83938255	83938455	+	719.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148207.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.04	3.77	3.99	8.85	11.05	5.96	5.65	7.93	8.26	3.51	14.07	10.96
Merged-chr4-15986676-2	chr4	15986584	15986784	+	719.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 13 of 15)	intron (NM_013752, intron 13 of 15)	27154.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.85	6.29	5.7	10.86	7.77	8.15	3.99	8.92	14.55	13.05	8.04	5.95
Merged-chr10-86781201-3	chr10	86781124	86781324	+	719.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2219.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	11.71	7.55	19.97	12.07	10.64	9.09	6.98	14.86	7.87	6.03	14.57	9.08
Merged-chr11-94993014-2	chr11	94992918	94993118	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	1806.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	4.44	8.55	2.85	3.22	11.86	15.05	5.31	4.99	10.62	17.07	4.02	5.64
Merged-chr5-24047944-2	chr5	24047840	24048040	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17250.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	10.09	2.52	20.54	10.86	4.91	6.27	6.98	15.84	3.74	7.03	6.53	8.77
Merged-chr2-156311038-2	chr2	156310931	156311131	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020255)	TTS (NM_020255)	-1442.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.06	5.53	9.13	6.44	4.09	5.64	1.99	1.71	11.01	6.03	18.09	3.76
Merged-chr16-10784644-2	chr16	10784575	10784775	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	861.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	4.85	11.32	5.7	5.23	6.55	9.09	7.64	7.15	10.62	3.01	6.53	10.65
Merged-chr5-143532248-2	chr5	143532148	143532348	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4217.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	12.11	8.55	16.54	6.44	6.14	7.84	3.99	1.85	14.95	8.54	9.55	8.46
Merged-chr7-24965373-2	chr7	24965258	24965458	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4717.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	4.04	8.8	4.56	3.22	11.05	9.41	2.99	6.87	12.78	10.54	13.57	5.01
Merged-chr9-55309742-2	chr9	55309662	55309862	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17151.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	6.46	5.53	2.85	3.22	6.95	8.47	10.96	5.97	3.15	6.03	5.53	7.52
Merged-chr4-10919247-2	chr4	10919190	10919390	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44792.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	2.02	4.02	11.98	1.61	6.14	6.27	2.99	7.43	6.88	7.03	12.56	9.4
Merged-chr16-93816011-2	chr16	93815937	93816137	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-16084.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	10.09	8.3	3.99	6.44	9.0	7.53	7.97	5.36	10.23	10.54	12.56	12.84
Merged-chr18-50095856-3	chr18	50095776	50095976	+	719.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-32325.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	7.67	7.8	11.41	6.03	17.18	10.66	3.32	15.9	11.21	16.07	10.05	9.08
Merged-chr5-122732212-1	chr5	122732112	122732312	+	719.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	24668.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.25	4.78	2.28	4.83	11.05	5.33	12.62	4.85	3.74	4.02	3.01	1.25
Merged-chr3-133086082-3	chr3	133085984	133086184	+	719.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	5741.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	10.5	7.55	10.27	3.62	3.27	15.37	5.98	14.13	9.44	11.05	19.09	7.83
Merged-chr5-21354877-1	chr5	21354777	21354977	+	719.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17796.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.44	8.3	7.99	16.89	10.23	3.76	12.29	7.93	6.1	11.05	8.54	10.65
Merged-chrX-167260607-3	chrX	167260498	167260698	+	719.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	intron (NM_001313760, intron 1 of 1)	3731.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	8.08	8.3	13.12	8.85	8.59	9.41	14.28	13.68	17.51	6.03	11.05	6.89
Merged-chr13-91505657-2	chr13	91505550	91505750	+	719.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	44553.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	4.44	6.29	3.99	14.08	12.68	7.84	7.64	7.01	2.56	1.0	9.55	4.7
Merged-chr6-88830276-3	chr6	88830181	88830381	+	719.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11654.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	11.31	7.55	13.69	4.42	6.14	5.02	1.99	7.29	18.69	8.03	16.58	15.98
Merged-chr15-39659643-2	chr15	39659505	39659705	+	719.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256384)	promoter-TSS (NM_001256384)	94.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	2.02	4.28	1.14	7.24	1.64	5.64	7.97	7.68	7.87	6.53	8.04	12.22
Merged-chr1-170932369-2	chr1	170932265	170932465	+	719.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B1|LTR|ERVL	-4782.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	10.5	4.02	11.41	7.24	4.5	5.96	9.63	12.22	6.1	2.01	3.52	1.25
Merged-chr4-65590006-2	chr4	65589916	65590116	+	719.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207109, intron 16 of 22)	intron (NM_207109, intron 16 of 22)	-14970.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	7.67	4.28	11.41	3.62	9.0	8.15	3.65	10.4	5.11	8.03	15.58	9.4
Merged-chr1-52141641-2	chr1	52141537	52141737	+	719.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205313, intron 11 of 24)	RLTR28|LTR|ERVL	22015.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.42	6.29	15.4	6.44	6.14	3.14	4.32	5.72	12.39	11.55	15.58	15.98
Merged-chr8-11549872-3	chr8	11549782	11549982	+	719.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359137, intron 2 of 14)	intron (NM_001359137, intron 2 of 14)	889.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	11.71	5.79	11.98	4.42	10.64	10.98	3.32	6.39	11.41	12.05	19.6	10.02
Merged-chr2-58286960-3	chr2	58286857	58287057	+	719.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040365)	TTS (NR_040365)	10178.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	11.71	7.55	11.98	8.04	7.36	8.78	11.29	13.4	10.03	7.03	6.53	14.41
Merged-chr9-54566978-3	chr9	54566888	54567088	+	719.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6909.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	2.02	6.79	9.13	9.65	9.82	6.9	5.65	10.01	11.41	16.57	19.09	5.64
Merged-chr13-13950839-3	chr13	13950804	13951004	+	719.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3770.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	7.67	4.28	3.99	4.42	8.18	2.51	6.64	6.36	4.33	7.03	11.05	7.52
Merged-chr1-57836851-2	chr1	57836757	57836957	+	719.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8714.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	9.29	5.28	9.7	11.26	9.82	5.96	13.29	12.62	7.28	9.54	15.58	5.64
Merged-chr11-53893205-2	chr11	53893118	53893318	+	719.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1515.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	14.94	5.79	9.7	8.04	11.45	5.96	8.64	10.57	6.1	9.54	7.54	9.71
Merged-chr6-70768982-2	chr6	70768891	70769091	+	719.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009075, intron 8 of 8)	intron (NM_009075, intron 8 of 8)	23184.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	8.48	7.04	9.13	0.8	7.36	9.09	7.64	9.22	9.64	5.02	4.02	6.89
Merged-chr10-10459779-3	chr10	10459675	10459875	+	719.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	MamRep38|DNA|hAT	12539.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.85	8.55	4.56	8.04	7.77	5.64	4.32	6.62	13.37	7.53	15.07	10.65
Merged-chr11-96982587-3	chr11	96982485	96982685	+	719.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4897.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	7.67	6.29	7.42	7.24	8.18	7.21	1.99	8.83	11.01	11.55	6.53	12.22
Merged-chr1-86444225-2	chr1	86444125	86444325	+	719.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17896.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	1.62	0.75	2.85	0.0	8.59	7.84	3.99	11.8	12.59	8.03	8.04	7.52
Merged-chr10-22701683-2	chr10	22701572	22701772	+	719.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	27760.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	13.33	7.55	4.56	12.07	10.23	9.09	12.29	12.62	6.1	8.54	12.06	6.27
Merged-chr9-92265957-3	chr9	92265840	92266040	+	719.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011636, intron 5 of 8)	intron (NM_011636, intron 5 of 8)	1421.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	5.25	7.29	11.41	3.62	4.91	5.64	8.3	8.72	10.42	9.54	9.55	5.64
Merged-chr3-154269965-3	chr3	154269865	154270065	+	719.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081263, intron 21 of 21)	intron (NM_001081263, intron 21 of 21)	60595.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	8.08	3.77	10.84	9.25	9.82	13.8	7.64	11.66	8.85	11.55	15.58	7.52
Merged-chr15-103365613-4	chr15	103365521	103365721	+	719.041687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	1170.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.46	14.84	13.12	2.82	13.91	13.8	3.99	5.8	12.19	15.06	6.53	6.89
Merged-chr13-12635200-3	chr13	12635112	12635312	+	719.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003568, intron 1 of 6)	L1MB8|LINE|L1	15183.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	10.5	8.8	13.69	9.25	9.82	15.99	4.65	7.18	16.52	7.53	12.56	8.14
Merged-chr19-43879867-1	chr19	43879767	43879967	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-99.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.65	5.03	1.14	1.61	8.18	9.09	1.33	3.95	7.87	1.0	2.01	4.07
Merged-chr9-121215749-1	chr9	121215649	121215849	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177589, intron 17 of 36)	intron (NM_177589, intron 17 of 36)	61423.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	6.46	4.78	0.0	2.41	3.68	5.64	2.66	1.18	3.74	3.01	2.51	2.82
Merged-chr7-83882548-1	chr7	83882448	83882648	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1793.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	3.23	1.76	0.0	1.61	2.86	1.88	4.98	5.19	3.15	3.01	2.51	3.76
Merged-chr8-46882133-1	chr8	46882033	46882233	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104754.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	1.21	0.0	1.14	0.0	0.0	0.63	5.98	1.96	1.57	1.51	0.0	2.19
Merged-chr8-124926889-2	chr8	124926793	124926993	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	22361.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	8.48	10.31	10.84	3.62	4.91	4.39	1.33	7.09	1.77	0.0	2.01	0.94
Merged-chr14-21985573-1	chr14	21985473	21985673	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4028.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	2.42	5.79	9.7	0.4	3.27	1.57	4.32	7.23	2.56	4.52	3.01	5.01
Merged-chr9-60478130-1	chr9	60478030	60478230	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32905.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.81	1.51	0.0	0.0	3.27	4.39	6.64	7.35	4.92	4.52	14.07	6.27
Merged-chr13-93922732-2	chr13	93922635	93922835	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	131958.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	10.5	5.79	9.13	6.03	9.82	4.7	9.63	14.69	11.21	3.51	9.55	5.64
Merged-chr10-83198133-3	chr10	83198048	83198248	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139669.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	10.09	5.53	3.99	4.83	2.86	10.35	3.32	8.58	8.46	12.55	18.09	3.45
Merged-chr6-47648520-1	chr6	47648420	47648620	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	6574.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	2.83	4.53	2.28	9.65	1.23	2.51	0.66	4.04	0.2	0.0	1.0	1.25
Merged-chrX-53269074-2	chrX	53268967	53269167	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001166365, exon 1 of 9)	5' UTR (NM_001166365, exon 1 of 9)	738.0	NM_030167	78755.0	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	3.23	6.29	10.84	5.63	9.82	4.7	9.97	15.2	8.26	6.53	12.56	5.64
Merged-chr4-149158847-1	chr4	149158747	149158947	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081274, intron 6 of 12)	intron (NM_001081274, intron 6 of 12)	7235.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	1.62	2.01	5.13	8.04	9.0	7.21	1.99	8.66	7.67	2.51	4.52	2.51
Merged-chr7-141176376-3	chr7	141176284	141176484	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3533.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	7.27	5.03	13.69	8.04	4.91	11.29	3.32	7.04	15.54	10.04	10.05	10.02
Merged-chr6-24684715-1	chr6	24684615	24684815	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19720.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	1.62	1.01	2.85	0.8	4.91	2.82	6.64	5.75	3.54	1.0	2.01	0.94
Merged-chr17-10153105-1	chr17	10153005	10153205	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	166256.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	3.23	0.0	0.0	2.41	3.27	7.21	2.99	7.91	4.92	1.0	7.03	2.82
Merged-chr14-73450349-1	chr14	73450249	73450449	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59700.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.85	5.03	5.7	6.84	9.82	2.2	4.65	5.8	3.34	5.02	3.01	7.52
Merged-chr13-98820704-2	chr13	98820617	98820817	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5268.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	3.63	5.79	6.28	4.83	7.77	4.39	2.33	9.11	9.24	4.02	10.05	2.19
Merged-chr2-91097218-1	chr2	91097118	91097318	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	540.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.67	11.32	5.7	2.41	11.45	15.05	2.99	6.03	6.49	9.54	16.08	5.33
Merged-chr14-103532052-1	chr14	103531952	103532152	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022886, intron 3 of 30)	intron (NM_022886, intron 3 of 30)	18711.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.83	3.27	4.56	6.44	4.91	2.51	5.98	4.46	3.74	5.02	4.52	3.76
Merged-chr15-96735904-3	chr15	96735832	96736032	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36204.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.25	7.29	13.12	6.84	8.59	11.92	8.64	6.62	11.21	12.05	15.07	15.04
Merged-chr7-88203049-1	chr7	88202949	88203149	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75036.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.83	0.5	5.13	1.61	5.73	4.39	5.98	7.18	2.56	4.02	8.04	5.95
Merged-chr9-104061461-1	chr9	104061361	104061561	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1660.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	5.65	1.51	3.42	6.44	5.73	6.59	4.98	6.06	2.75	1.51	2.01	2.19
Merged-chrX-99677465-1	chrX	99677365	99677565	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-143604.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	5.65	3.77	5.7	2.41	7.36	2.82	1.0	6.64	4.13	7.03	5.02	4.07
Merged-chr6-140815906-3	chr6	140815810	140816010	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	189025.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.25	7.55	5.7	9.25	6.55	6.9	9.3	8.8	14.95	10.04	16.08	8.14
Merged-chr4-109124804-1	chr4	109124704	109124904	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	MTE2a|LTR|ERVL-MaLR	-6768.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	2.42	3.02	2.28	6.03	7.77	3.45	0.0	7.37	4.52	5.02	2.51	2.51
Merged-chr17-10745319-1	chr17	10745219	10745419	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	94872.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.81	1.01	0.0	0.8	9.0	1.25	3.32	6.42	0.2	1.51	2.51	0.31
Merged-chr4-133370228-2	chr4	133370102	133370302	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039582)	TTS (NR_039582)	426.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	9.29	2.52	5.13	5.63	11.86	7.84	4.98	3.87	13.77	2.51	5.02	6.27
Merged-chr4-150488924-1	chr4	150488824	150489024	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163250.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.25	2.26	9.13	5.23	6.95	4.08	6.64	5.27	3.54	4.52	5.02	7.21
Merged-chr3-22137956-1	chr3	22137856	22138056	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61304.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.25	5.53	3.99	3.22	7.36	7.21	3.65	7.49	3.74	4.02	9.55	8.14
Merged-chr7-102507022-2	chr7	102506923	102507123	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12250.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	7.67	3.52	5.13	10.86	10.23	5.96	4.98	11.24	7.28	11.05	7.54	7.83
Merged-chr5-32077367-2	chr5	32077277	32077477	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-59095.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	9.69	4.28	9.13	7.64	9.41	11.6	8.3	14.66	10.23	3.51	10.05	10.02
Merged-chr11-68778152-1	chr11	68778052	68778252	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175260, intron 15 of 40)	intron (NM_175260, intron 15 of 40)	74979.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	6.06	4.53	3.42	8.85	8.18	8.15	1.33	3.98	4.72	3.01	3.52	1.57
Merged-chr8-121931535-1	chr8	121931435	121931635	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	13377.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	4.85	2.26	1.71	4.42	6.14	2.2	4.65	7.54	1.57	0.0	2.01	0.31
Merged-chr4-19968127-1	chr4	19968027	19968227	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37612.0	NR_040768	74988.0	Mm.445292	NR_040768		4930480G23Rik	-	RIKEN cDNA 4930480G23 gene	ncRNA	0.81	2.52	7.42	5.23	2.86	7.21	0.66	7.29	4.33	6.03	4.52	3.13
Merged-chr6-52920886-2	chr6	52920795	52920995	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11275.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.02	7.04	1.14	3.62	6.55	5.02	9.97	7.79	7.47	2.01	8.04	8.77
Merged-chr19-6360066-1	chr19	6359966	6360166	+	719.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25A|LTR|ERVK	-3624.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	3.23	8.3	18.25	1.61	12.68	1.25	2.99	3.0	7.67	1.0	11.56	6.89
Merged-chr3-130691555-3	chr3	130691477	130691677	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	17867.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	4.04	6.79	9.13	8.85	4.09	8.15	6.31	10.09	11.6	10.04	17.59	8.46
Merged-chr4-46591047-1	chr4	46590947	46591147	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	10882.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.63	4.28	11.98	5.63	7.77	7.53	2.99	7.43	2.95	2.51	4.52	3.45
Merged-chr1-43506878-3	chr1	43506771	43506971	+	718.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	61120.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	14.13	7.29	6.85	11.26	10.64	9.09	8.97	22.54	10.03	16.07	15.07	8.77
Merged-chr16-50069268-3	chr16	50069162	50069362	+	718.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	3590.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	9.29	6.04	1.14	5.63	8.59	4.39	12.95	8.3	11.8	10.04	16.08	8.77
Merged-chr11-67550011-3	chr11	67549917	67550117	+	718.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	MIRb|SINE|MIR	17019.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	9.69	4.02	13.69	3.62	3.27	6.59	6.31	6.22	12.98	14.06	21.1	16.92
Merged-chr8-120702222-3	chr8	120702116	120702316	+	718.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	33896.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	2.02	10.82	10.84	5.63	4.5	8.47	9.97	12.67	7.47	10.04	8.54	6.58
Merged-chr15-6080950-3	chr15	6080855	6081055	+	718.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36251.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	11.31	8.8	4.56	8.85	6.95	9.09	5.31	10.93	9.44	11.55	7.54	8.77
Merged-chr14-47294418-2	chr14	47294289	47294489	+	718.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3885.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	3.23	8.8	6.85	10.05	7.36	9.72	3.32	6.2	10.03	7.53	11.56	8.14
Merged-chr1-192138644-2	chr1	192138525	192138725	+	718.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-585.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	8.88	12.07	13.12	15.28	11.86	7.84	12.95	12.56	5.9	14.06	10.05	10.65
Merged-chr2-79499499-3	chr2	79499398	79499598	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42862.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	12.52	9.06	5.13	11.66	10.64	12.86	6.98	15.98	9.05	11.55	16.58	12.22
Merged-chr17-84270302-3	chr17	84270188	84270388	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-82341.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.44	8.55	8.56	16.89	14.73	6.27	1.0	6.87	6.69	5.52	13.06	7.52
Merged-chr1-13052262-2	chr1	13052217	13052417	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61182.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	3.63	7.55	3.42	9.65	2.05	7.21	1.66	4.6	6.49	2.51	0.5	5.64
Merged-chr4-155121400-3	chr4	155121292	155121492	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	34788.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	10.5	6.54	7.99	18.9	19.64	15.99	21.92	25.46	8.65	2.51	15.58	5.33
Merged-chr9-121299402-3	chr9	121299306	121299506	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	1904.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	8.48	8.8	16.54	12.07	6.55	1.25	5.65	5.83	11.41	13.56	6.53	1.88
Merged-chr7-45873377-4	chr7	45873279	45873479	+	718.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133950, intron 1 of 4)	intron (NM_133950, intron 1 of 4)	539.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	6.06	5.28	4.56	5.63	7.36	8.47	6.98	5.44	8.65	10.54	11.05	10.65
Merged-chr17-23748278-3	chr17	23748165	23748365	+	718.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-971.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	14.54	7.8	10.27	5.23	8.18	9.41	5.65	9.34	13.37	11.05	12.06	9.71
Merged-chr15-25035299-2	chr15	25035201	25035401	+	718.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	378463.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	2.52	1.14	2.41	4.09	5.33	5.31	7.96	11.21	5.02	6.03	7.21
Merged-chr9-119403217-2	chr9	119403174	119403374	+	718.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007397, intron 1 of 9)	CpG	1096.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	1.62	1.76	7.42	11.66	8.18	3.14	4.65	5.94	3.54	6.03	8.54	4.07
Merged-chr11-30024616-3	chr11	30024572	30024772	+	718.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146016, exon 2 of 42)	5' UTR (NM_146016, exon 2 of 42)	1361.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	9.29	13.83	3.42	2.41	8.59	6.27	8.3	5.86	3.93	12.05	11.05	8.14
Merged-chr16-34573696-3	chr16	34573666	34573866	+	718.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-59739.0	NM_177357	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	12.11	5.28	10.84	4.02	4.09	8.47	11.96	6.53	7.87	3.01	10.05	3.76
Merged-chr13-5779030-3	chr13	5778928	5779128	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79064.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.86	9.56	9.13	3.62	16.77	11.6	10.3	11.47	14.16	11.05	10.05	4.07
Merged-chr13-30764505-3	chr13	30764392	30764592	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	15259.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	14.94	8.3	7.42	14.88	7.36	9.09	4.65	5.8	8.06	6.03	14.57	15.04
Merged-chr15-98804262-3	chr15	98804174	98804374	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001013741, exon 2 of 2)	3' UTR (NM_001013741, exon 2 of 2)	3651.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	8.88	7.29	11.41	4.42	9.0	11.29	4.32	3.67	12.19	18.08	22.11	5.95
Merged-chr10-78159412-1	chr10	78159312	78159512	+	718.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10356.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.85	4.78	2.85	4.42	5.73	5.64	4.98	5.8	9.83	2.01	4.02	4.07
Merged-chr3-103781685-3	chr3	103781587	103781787	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	9588.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	6.46	7.04	12.55	18.1	10.64	8.78	9.3	10.77	11.41	1.51	7.03	6.89
Merged-chr1-32252477-1	chr1	32252377	32252577	+	718.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133235, intron 2 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	79755.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	4.04	1.26	5.13	2.41	14.32	7.21	13.62	6.28	7.87	7.03	6.53	2.19
Merged-chr2-29650259-1	chr2	29650159	29650359	+	718.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	L2a|LINE|L2	30539.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.04	4.78	1.14	2.41	2.05	9.09	1.0	3.34	15.93	13.05	13.57	2.51
Merged-chr19-42778055-1	chr19	42777955	42778155	+	718.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362410, intron 2 of 16)	intron (NM_001362410, intron 2 of 16)	591.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	2.83	7.29	5.13	3.22	6.55	6.27	6.64	5.58	7.67	2.01	2.01	3.76
Merged-chr1-178329226-2	chr1	178329110	178329310	+	718.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016805, exon 14 of 14)	3' UTR (NM_016805, exon 14 of 14)	8605.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	8.48	4.53	8.56	5.23	10.23	3.45	9.3	7.01	10.03	10.54	4.52	7.21
Merged-chr7-43532584-2	chr7	43532503	43532703	+	718.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021293, exon 2 of 6)	exon (NM_021293, exon 2 of 6)	568.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	5.65	3.52	8.56	8.45	7.36	8.78	2.99	13.46	9.05	11.05	9.55	7.52
Merged-chr17-28208231-2	chr17	28208139	28208339	+	718.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	461.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	6.46	7.55	3.99	3.62	19.64	12.54	4.65	5.58	3.34	1.51	1.51	2.19
Merged-chr11-20143899-2	chr11	20143799	20143999	+	718.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-30948.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	8.08	14.34	6.28	4.83	6.55	14.11	9.63	6.67	12.39	6.53	6.03	7.52
Merged-chr19-16435670-3	chr19	16435554	16435754	+	718.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-13.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.44	7.8	6.28	7.24	6.55	15.05	4.32	8.47	9.44	3.01	9.55	7.83
Merged-chr13-100854409-2	chr13	100854299	100854499	+	718.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20972.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	10.9	4.78	3.42	5.23	9.41	13.48	8.3	5.64	7.28	11.55	15.58	8.14
Merged-chr7-75774759-3	chr7	75774668	75774868	+	718.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-73570.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	14.13	6.29	9.13	3.62	11.45	14.11	14.62	4.93	7.47	17.57	15.58	8.46
Merged-chr14-32783251-3	chr14	32783158	32783358	+	718.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2705.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	8.88	6.79	13.12	16.09	6.14	6.59	8.64	13.43	7.28	13.05	14.57	2.82
Merged-chr4-47280329-2	chr4	47280232	47280432	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 17 of 39)	intron (NM_009928, intron 17 of 39)	72320.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.25	5.03	8.56	3.22	14.32	7.53	3.65	5.69	10.62	14.06	12.06	6.58
Merged-chr13-76393289-2	chr13	76393195	76393395	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	8334.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.63	7.55	9.13	16.09	7.36	6.59	8.97	19.54	6.49	7.53	9.55	2.82
Merged-chr5-142879521-3	chr5	142879388	142879588	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15750.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	7.67	8.3	9.7	4.42	4.91	8.78	7.31	7.12	12.19	7.53	16.08	5.95
Merged-chr10-57776823-3	chr10	57776732	57776932	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8091.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	9.69	6.79	4.56	13.27	15.96	25.09	9.97	16.6	11.8	8.03	6.53	4.39
Merged-chr3-90438711-1	chr3	90438611	90438811	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-5075.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	4.85	5.79	7.42	4.02	2.05	10.03	4.65	7.93	6.29	3.51	18.59	6.58
Merged-chr13-45963160-2	chr13	45963046	45963246	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	1845.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.85	9.31	14.83	4.42	7.77	11.29	7.31	5.66	11.41	5.52	6.53	2.51
Merged-chr17-5733622-2	chr17	5733479	5733679	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-65078.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.65	9.56	4.56	6.03	3.27	6.9	6.64	1.26	7.47	6.03	9.04	5.64
Merged-chr7-4134326-2	chr7	4134234	4134434	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001305822, exon 14 of 14)	3' UTR (NM_001305822, exon 14 of 14)	2592.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	4.44	4.28	10.27	6.84	4.5	10.03	6.64	9.34	8.85	5.52	15.58	3.45
Merged-chr11-4843637-2	chr11	4843552	4843752	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010898, intron 1 of 15)	B3|SINE|B2	5892.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	6.86	2.77	2.28	6.44	9.82	10.98	2.33	7.99	15.34	12.05	9.55	4.39
Merged-chr7-63875613-1	chr7	63875513	63875713	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41244.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.62	0.0	0.0	0.8	3.27	11.92	6.31	4.96	0.2	2.01	0.0	0.0
Merged-chr4-135947949-1	chr4	135947849	135948049	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	543.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	2.02	4.78	4.56	2.41	7.36	7.21	3.32	8.16	7.08	10.54	4.02	2.82
Merged-chr7-125546515-1	chr7	125546415	125546615	+	718.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5767.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.23	6.79	3.42	4.02	3.68	1.88	0.66	2.72	14.55	9.54	12.56	8.14
Merged-chr12-3820814-2	chr12	3820707	3820907	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	13647.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	1.62	2.77	6.85	1.61	7.36	7.84	6.98	7.85	10.23	3.51	9.55	3.76
Merged-chr15-93485515-1	chr15	93485415	93485615	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358750, intron 6 of 6)	intron (NM_001358750, intron 6 of 6)	87051.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	4.04	3.77	3.42	3.22	6.14	5.02	4.98	7.32	1.18	4.02	6.03	9.4
Merged-chr5-125404236-2	chr5	125404117	125404317	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14200.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.25	5.53	9.13	5.63	2.45	6.59	2.33	5.92	4.92	5.02	4.02	4.39
Merged-chr5-100590687-2	chr5	100590629	100590829	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18524.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	8.48	6.29	5.13	2.82	6.55	1.57	1.33	0.7	14.36	3.01	10.05	2.82
Merged-chr3-15277215-3	chr3	15277118	15277318	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	55084.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	14.13	5.03	9.13	8.85	9.0	17.56	18.6	11.07	9.44	8.54	8.04	7.52
Merged-chr5-125178639-2	chr5	125178590	125178790	+	718.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	CpG	524.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	5.65	5.03	5.7	7.24	7.36	8.78	7.64	5.64	5.31	6.03	12.06	7.83
Merged-chr6-116654347-2	chr6	116654255	116654455	+	718.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	3671.0	NM_001166580	213393.0	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Depp1|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	5.25	4.28	5.13	7.24	8.59	10.35	5.98	3.7	10.42	17.07	9.55	9.08
Merged-chr14-25773882-2	chr14	25773778	25773978	+	718.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5022.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.25	1.51	10.27	4.42	12.68	10.98	4.65	7.57	11.21	4.02	9.55	9.08
Merged-chr9-106314870-2	chr9	106314785	106314985	+	718.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	33824.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	7.27	8.8	7.42	7.24	9.82	3.14	5.98	7.09	1.57	4.02	0.0	1.25
Merged-chr5-101840578-2	chr5	101840489	101840689	+	718.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	75459.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	7.27	6.54	9.13	11.26	3.27	2.51	1.0	3.98	10.42	7.53	6.53	9.4
Merged-chr5-142475897-2	chr5	142475736	142475936	+	718.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172725, intron 14 of 16)	intron (NM_172725, intron 14 of 16)	11905.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	6.06	0.75	6.28	3.22	6.95	3.14	0.66	4.91	1.38	3.51	2.01	2.19
Merged-chr3-138012566-2	chr3	138012454	138012654	+	718.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-31005.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.4	3.77	0.57	2.82	9.82	9.41	2.33	7.54	12.78	20.08	12.06	9.4
Merged-chr2-25072385-3	chr2	25072281	25072481	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7942.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	14.13	9.81	3.99	1.21	8.18	18.19	4.65	5.61	10.62	11.55	10.55	1.88
Merged-chr16-64853180-3	chr16	64853113	64853313	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	1212.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	10.9	2.77	2.85	2.41	4.5	0.63	4.32	7.32	7.28	3.01	1.51	5.64
Merged-chr7-3300412-3	chr7	3300310	3300510	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3122.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	4.85	7.04	16.54	6.44	11.45	11.29	3.99	6.03	20.85	25.11	15.58	11.9
Merged-chr1-118391095-1	chr1	118390995	118391195	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359330, intron 1 of 39)	MTD|LTR|ERVL-MaLR	2037.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	9.29	8.8	16.54	2.41	2.86	6.9	4.65	3.42	9.64	3.51	3.52	1.25
Merged-chr9-120602093-3	chr9	120601992	120602192	+	718.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24761.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	7.27	6.79	9.7	8.85	22.09	20.7	7.31	15.5	7.47	7.03	8.54	5.01
Merged-chr5-24542850-3	chr5	24542743	24542943	+	718.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177676)	TTS (NM_177676)	-1865.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	10.9	5.03	11.41	16.49	11.05	18.19	11.63	13.93	9.83	12.05	20.6	6.58
Merged-chr5-99361962-3	chr5	99361886	99362086	+	718.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-109059.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.69	4.53	9.13	13.27	12.68	3.76	5.65	13.65	13.37	7.03	10.05	4.39
Merged-chr2-180925349-2	chr2	180925258	180925458	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3665.0	NM_001163247	329581.0	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	8.48	7.04	2.28	1.61	10.64	18.5	3.65	5.21	15.34	7.53	11.56	11.9
Merged-chr13-49162875-1	chr13	49162775	49162975	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14547.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	2.83	4.78	0.0	3.22	9.41	9.09	6.64	7.46	5.51	7.03	6.03	1.25
Merged-chr9-104140543-2	chr9	104140426	104140626	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13883.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	4.04	6.04	4.56	8.04	4.91	6.59	20.26	18.5	10.23	8.54	12.06	8.46
Merged-chr15-79804543-2	chr15	79804431	79804631	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030689, exon 1 of 5)	exon (NM_030689, exon 1 of 5)	178.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	3.23	5.79	2.85	8.04	10.23	8.15	3.99	3.62	13.96	4.52	4.52	4.07
Merged-chr10-62582882-1	chr10	62582782	62582982	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019553, intron 14 of 14)	intron (NM_019553, intron 14 of 14)	-4425.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	4.44	6.79	6.85	6.03	8.59	12.54	4.98	6.93	4.13	7.53	14.57	5.95
Merged-chr1-120197393-3	chr1	120197275	120197475	+	718.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67905.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	7.27	13.33	2.28	2.41	9.0	13.48	6.31	7.77	14.16	10.04	15.07	10.34
Merged-chr10-60739810-3	chr10	60739738	60739938	+	718.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	12944.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	8.48	2.77	6.85	12.07	8.18	4.08	8.3	16.68	10.23	6.03	11.56	4.39
Merged-chr10-80074414-3	chr10	80074303	80074503	+	718.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359635, intron 4 of 31)	PB1D9|SINE|Alu	1036.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	9.69	8.05	11.98	6.44	6.95	9.09	8.97	3.25	11.8	16.07	5.02	7.83
Merged-chr9-63611169-3	chr9	63611040	63611240	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	8494.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.04	7.04	6.85	2.41	10.64	11.92	5.65	12.64	9.83	13.05	1.0	5.33
Merged-chr2-14165805-3	chr2	14165709	14165909	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-8715.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	9.29	2.52	10.27	6.03	14.73	11.29	11.63	9.64	10.23	9.04	12.06	11.28
Merged-chr10-22335620-3	chr10	22335524	22335724	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-26270.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	11.31	9.31	28.52	11.26	9.41	13.17	7.97	16.6	8.26	3.51	5.53	6.89
Merged-chr14-8171857-3	chr14	8171767	8171967	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024221, intron 2 of 9)	intron (NM_024221, intron 2 of 9)	1125.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	6.86	4.28	7.42	11.26	11.86	6.9	10.3	20.89	6.1	3.51	11.56	11.28
Merged-chr6-148940554-3	chr6	148940437	148940637	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361398, intron 1 of 4)	B2_Mm2|SINE|B2	4289.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	14.94	12.07	1.14	2.82	2.45	2.51	4.98	5.66	8.06	13.56	13.06	3.13
Merged-chr18-24336011-2	chr18	24335927	24336127	+	718.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3339.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	3.23	1.01	8.56	6.84	6.95	4.39	10.3	15.2	3.74	2.01	15.58	8.77
Merged-chr14-21231895-2	chr14	21231784	21231984	+	718.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 4 of 10)	L1M3|LINE|L1	155732.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	8.08	1.51	7.99	10.86	4.91	8.78	9.97	10.79	7.87	2.01	10.05	5.01
Merged-chr12-86801422-2	chr12	86801294	86801494	+	718.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67025.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	4.04	9.31	13.12	7.64	13.09	17.25	6.98	5.24	12.19	16.07	8.04	7.52
Merged-chr8-95024558-2	chr8	95024450	95024650	+	718.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173036, intron 2 of 11)	intron (NM_173036, intron 2 of 11)	6858.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	1.62	6.29	1.71	0.0	7.77	9.41	4.98	13.77	6.1	10.04	12.56	7.83
Merged-chr16-16035620-2	chr16	16035527	16035727	+	718.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	L1_Rod|LINE|L1	111224.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	11.31	8.05	12.55	10.46	7.36	8.47	2.99	11.8	8.26	6.03	7.03	8.14
Merged-chr2-131494658-2	chr2	131494573	131494773	+	718.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	2811.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.04	1.01	12.55	13.27	7.77	2.82	6.64	5.94	4.72	5.02	8.04	3.45
Merged-chr5-64505436-2	chr5	64505348	64505548	+	718.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28440.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	6.46	13.83	6.28	3.62	4.91	13.17	2.66	8.83	8.65	11.05	10.05	3.45
Merged-chr11-70897862-3	chr11	70897769	70897969	+	718.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019400, intron 5 of 17)	intron (NM_019400, intron 5 of 17)	53108.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	12.52	4.02	11.98	10.46	13.5	13.8	6.98	9.67	7.08	8.54	9.55	5.01
Merged-chr4-139249476-3	chr4	139249375	139249575	+	718.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	55364.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.06	4.78	17.11	10.86	8.18	4.7	3.65	10.29	5.9	4.02	12.06	10.96
Merged-chr15-101105606-3	chr15	101105523	101105723	+	718.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10132.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	6.86	4.02	13.12	1.61	1.64	5.96	2.33	5.05	12.0	23.6	12.06	11.59
Merged-chr1-23382116-2	chr1	23381997	23382197	+	718.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	1078.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	8.88	5.79	15.97	12.87	9.41	1.88	4.98	10.12	9.44	9.54	10.55	7.52
Merged-chr4-41636732-2	chr4	41636609	41636809	+	718.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175138, intron 19 of 19)	intron (NM_175138, intron 19 of 19)	3593.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	7.67	7.29	10.27	6.03	7.36	10.03	8.3	8.33	6.29	5.52	8.04	6.58
Merged-chr8-73208350-2	chr8	73208270	73208470	+	718.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	145170.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	10.9	8.05	14.26	10.86	0.82	0.0	0.0	0.0	6.88	6.53	14.57	13.47
Merged-chr13-59002381-2	chr13	59002267	59002467	+	718.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	194670.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.85	2.01	5.13	7.24	9.82	8.15	7.31	12.45	9.05	5.02	10.55	6.58
Merged-chr3-87274545-3	chr3	87274434	87274634	+	718.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11010.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	13.33	8.3	11.98	15.69	9.82	7.21	8.64	11.24	6.29	17.57	7.03	7.52
Merged-chr15-7264021-1	chr15	7263921	7264121	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289496, intron 6 of 22)	intron (NM_001289496, intron 6 of 22)	123479.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	6.46	4.53	4.56	2.01	2.45	9.09	3.65	7.18	6.49	7.53	6.53	0.63
Merged-chr19-41481730-1	chr19	41481630	41481830	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43522.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	8.08	4.02	4.56	0.8	3.27	6.27	6.31	6.5	9.64	9.04	5.53	5.01
Merged-chr1-165661379-1	chr1	165661279	165661479	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26838.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.85	1.01	7.99	4.02	2.86	5.02	10.3	5.61	4.52	5.02	4.52	3.76
Merged-chr16-46148750-2	chr16	46148573	46148773	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	6404.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	2.02	2.01	3.99	4.02	2.45	6.27	7.31	7.49	2.95	5.02	3.52	1.88
Merged-chr3-107099728-2	chr3	107099628	107099828	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1839.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.63	2.77	1.14	4.83	4.5	7.53	6.64	8.16	11.41	12.05	8.54	6.89
Merged-chr11-79112885-1	chr11	79112785	79112985	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	33588.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	3.63	3.27	2.28	2.01	2.45	7.53	1.0	5.75	6.29	3.51	2.51	5.01
Merged-chr3-105900459-1	chr3	105900359	105900559	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3962.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	8.08	5.79	12.55	1.21	4.91	9.72	1.66	6.06	8.65	4.02	7.03	6.27
Merged-chr2-128863915-1	chr2	128863815	128864015	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024237)	promoter-TSS (NM_024237)	-17.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	5.25	3.27	6.28	4.02	2.05	11.29	3.65	7.77	3.15	3.01	6.03	5.01
Merged-chr12-12268250-1	chr12	12268150	12268350	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	6111.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.25	3.27	1.14	2.41	8.18	5.02	7.31	5.69	8.85	3.51	4.02	1.25
Merged-chr11-101003256-1	chr11	101003156	101003356	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6196.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	5.65	5.03	5.7	4.42	5.73	8.78	2.33	9.67	7.28	5.52	4.02	2.82
Merged-chr1-35759894-1	chr1	35759794	35759994	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-308506.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.65	1.51	5.7	3.62	3.27	4.08	7.64	5.97	3.34	3.01	1.0	0.94
Merged-chr8-47940727-1	chr8	47940627	47940827	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	49824.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	3.63	3.52	2.28	3.62	3.68	2.82	4.32	5.72	5.51	3.01	6.03	1.88
Merged-chr5-107961650-1	chr5	107961550	107961750	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	25427.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.83	5.03	3.42	5.23	6.55	3.45	5.98	4.68	2.16	4.52	4.52	3.76
Merged-chr16-25059774-1	chr16	25059674	25059874	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_040374, exon 1 of 3)	non-coding (NR_040374, exon 1 of 3)	135.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	9.69	11.32	5.13	7.24	2.86	5.64	7.64	10.65	8.65	6.03	8.04	5.33
Merged-chr1-86191027-1	chr1	86190927	86191127	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001310702, exon 12 of 25)	exon (NM_001310702, exon 12 of 25)	36247.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	2.02	2.77	0.0	2.01	3.27	7.21	6.31	5.44	1.97	1.0	4.02	0.94
Merged-chr8-77425028-1	chr8	77424928	77425128	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	B3A|SINE|B2	-92028.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.63	5.28	1.71	2.41	2.45	4.39	3.99	6.25	7.67	5.02	1.51	6.58
Merged-chr11-69031152-1	chr11	69031052	69031252	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013256, exon 14 of 23)	exon (NM_001013256, exon 14 of 23)	-14485.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.65	2.52	7.99	6.03	11.86	2.82	2.33	6.67	3.34	3.01	7.03	11.59
Merged-chr11-113811350-1	chr11	113811250	113811450	+	718.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172800, intron 36 of 44)	intron (NM_172800, intron 36 of 44)	-59535.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.23	4.02	10.84	2.01	2.86	2.82	1.66	1.54	10.42	8.03	13.57	5.01
Merged-chr17-5494946-1	chr17	5494846	5495046	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	2346.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	1.21	3.02	2.28	5.23	8.18	5.02	3.32	5.5	3.74	0.5	6.03	2.19
Merged-chr3-15284130-3	chr3	15284043	15284243	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48159.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.85	11.07	9.13	10.05	7.36	3.76	16.94	10.74	7.08	8.03	9.04	7.83
Merged-chr1-64970907-1	chr1	64970807	64971007	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14083.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	2.42	0.0	6.85	1.61	6.55	9.41	8.64	6.06	6.29	2.01	8.54	5.33
Merged-chr6-128889783-1	chr6	128889683	128889883	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1341.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	4.04	8.05	11.98	1.61	4.09	3.76	1.99	2.61	6.49	4.52	6.03	5.33
Merged-chr7-34984588-1	chr7	34984488	34984688	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	71978.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.25	14.34	7.99	10.86	1.23	2.51	2.33	4.63	2.95	0.0	4.02	2.82
Merged-chr1-181545576-1	chr1	181545476	181545676	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34125.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	4.85	4.53	3.42	4.02	7.36	7.21	2.33	6.79	6.1	5.02	8.04	3.76
Merged-chr1-171330161-1	chr1	171330061	171330261	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	592.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	12.52	10.31	11.41	4.02	6.95	10.35	4.65	5.38	9.24	9.54	10.05	5.01
Merged-chr15-58050204-1	chr15	58050104	58050304	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009572, intron 3 of 3)	intron (NM_009572, intron 3 of 3)	-15910.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	1.21	1.51	2.28	3.22	8.18	1.88	1.66	6.73	1.18	4.52	4.02	4.07
Merged-chr15-53688873-1	chr15	53688773	53688973	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	-74594.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.04	4.02	2.28	4.42	7.77	2.82	1.33	8.21	6.29	7.03	6.53	5.01
Merged-chr8-90877915-1	chr8	90877815	90878015	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	49080.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	13.33	7.55	2.28	1.61	2.86	5.02	4.32	1.68	6.69	1.0	3.01	3.13
Merged-chr3-95154133-1	chr3	95154033	95154233	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6287.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	4.04	8.3	0.0	2.41	7.77	7.53	1.33	7.07	6.1	5.02	12.06	2.82
Merged-chr5-110174540-3	chr5	110174446	110174646	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040430, intron 1 of 2)	RLTR31D_MM|LTR|ERVK	1958.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	7.67	8.55	6.28	7.64	5.73	5.64	5.65	9.0	12.0	9.54	9.04	5.64
Merged-chr3-87322824-1	chr3	87322724	87322924	+	718.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-35057.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	1.21	0.75	0.0	0.4	3.68	9.41	1.99	3.08	10.42	10.04	13.57	6.27
Merged-chr13-37784424-1	chr13	37784324	37784524	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41614.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.81	3.27	3.42	0.8	3.68	8.47	2.66	6.03	2.75	4.02	8.54	0.31
Merged-chrX-48175787-1	chrX	48175687	48175887	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172465, intron 9 of 9)	L1MB8|LINE|L1	29351.0	NM_028773	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	3.63	2.52	5.7	11.66	8.18	6.9	8.3	6.17	12.59	9.04	4.02	0.63
Merged-chr6-134079757-2	chr6	134079651	134079851	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	44051.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.42	3.77	7.42	5.63	3.68	7.53	4.32	6.64	16.72	18.08	11.05	5.33
Merged-chrX-6922375-2	chrX	6922272	6922472	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177914, intron 12 of 26)	intron (NM_177914, intron 12 of 26)	48888.0	NM_177914	331374.0	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	5.65	8.05	7.42	12.07	14.73	3.14	7.64	8.58	5.51	6.03	5.53	2.82
Merged-chr18-69421461-1	chr18	69421361	69421561	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	75301.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.23	2.01	3.42	5.63	3.27	7.21	2.99	7.37	2.56	5.52	2.51	6.58
Merged-chr4-89363503-1	chr4	89363403	89363603	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-52471.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.81	1.76	2.85	0.8	6.55	5.02	5.31	8.61	1.57	3.51	14.57	2.82
Merged-chr16-14131003-1	chr16	14130903	14131103	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 16 of 26)	intron (NM_001081154, intron 16 of 26)	28271.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.25	1.01	6.85	1.21	5.32	1.57	3.65	7.29	2.56	7.03	2.51	0.94
Merged-chr10-94577728-1	chr10	94577628	94577828	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177026, intron 1 of 3)	URR1A|DNA|hAT-Charlie	1465.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.42	3.77	3.42	0.0	5.32	14.42	1.33	6.42	11.01	9.04	5.02	3.13
Merged-chr2-6705005-1	chr2	6704905	6705105	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	16657.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	2.77	3.42	4.83	7.36	0.63	4.32	6.48	7.67	3.01	9.55	8.77
Merged-chr11-59534545-3	chr11	59534452	59534652	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-7017.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	8.88	7.29	3.99	11.66	15.14	6.59	6.64	6.7	12.0	14.56	18.09	10.96
Merged-chr5-34335869-1	chr5	34335769	34335969	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	-381.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	12.52	7.55	10.27	16.49	6.95	6.27	7.31	6.76	13.96	16.07	5.53	15.66
Merged-chr12-51706988-1	chr12	51706888	51707088	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-15074.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	5.25	2.77	0.0	0.8	7.36	5.33	5.98	11.47	5.7	6.03	11.05	16.29
Merged-chr14-27397769-3	chr14	27397671	27397871	+	717.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 9 of 10)	intron (NM_027871, intron 9 of 10)	-31063.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	8.88	8.05	9.7	12.47	19.64	8.78	9.3	14.66	8.26	6.53	6.53	12.53
Merged-chr5-124536938-3	chr5	124536792	124536992	+	717.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3899.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	4.44	8.05	1.71	8.04	10.23	6.9	5.98	8.07	9.24	8.03	18.09	6.27
Merged-chr3-51636849-3	chr3	51636753	51636953	+	717.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24326.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	8.08	9.06	17.68	12.87	14.32	16.93	10.3	12.64	7.08	10.54	10.05	11.28
Merged-chr17-46546358-3	chr17	46546255	46546455	+	717.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081335)	promoter-TSS (NM_001081335)	33.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	10.5	18.61	8.56	6.44	14.32	8.15	5.65	15.93	13.77	16.57	15.07	11.59
Merged-chr15-85709417-3	chr15	85709253	85709453	+	717.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2034.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	9.29	7.29	15.97	7.64	9.82	1.25	3.99	3.56	6.29	5.52	6.03	3.45
Merged-chr1-43321150-2	chr1	43321043	43321243	+	717.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124382.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	6.46	7.8	7.99	5.23	5.73	10.03	9.3	10.12	10.23	6.53	20.1	4.7
Merged-chr2-170154362-2	chr2	170154246	170154446	+	717.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.85	3.77	5.13	6.84	7.36	1.25	1.66	4.01	13.57	11.05	16.08	4.07
Merged-chr5-45677864-3	chr5	45677761	45677961	+	717.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019438, intron 7 of 20)	MTD|LTR|ERVL-MaLR	7936.0	NM_019438	54392.0	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	6.86	14.09	12.55	9.25	8.59	9.41	9.63	14.83	6.49	11.55	6.03	7.83
Merged-chr12-87275085-3	chr12	87274985	87275185	+	717.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8357.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	16.96	6.54	13.69	7.64	10.64	15.05	5.98	13.35	6.49	10.04	12.56	7.21
Merged-chr12-80111429-5	chr12	80111307	80111507	+	717.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	1606.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.85	5.28	3.42	4.42	5.73	9.09	6.98	3.73	6.69	10.04	4.02	6.58
Merged-chr3-136799102-2	chr3	136798997	136799197	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	129031.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.25	1.51	7.42	9.65	9.82	6.59	3.32	8.52	8.85	4.02	12.06	4.07
Merged-chr13-41068298-2	chr13	41068198	41068398	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 2 of 11)	MLT1B|LTR|ERVL-MaLR	2167.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	4.85	4.02	9.13	8.04	8.18	3.76	4.65	6.03	9.44	6.03	12.06	4.7
Merged-chr5-64634979-2	chr5	64634885	64635085	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-24286.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.06	1.51	13.69	6.44	3.27	4.39	13.95	10.01	7.28	10.04	14.57	8.14
Merged-chr17-86168003-2	chr17	86167947	86168147	+	717.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011104, exon 1 of 15)	5' UTR (NM_011104, exon 1 of 15)	262.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	10.9	14.34	5.7	6.03	9.41	11.29	7.64	8.13	8.65	8.54	12.06	8.14
Merged-chr16-38560098-3	chr16	38560009	38560209	+	717.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205286, intron 1 of 8)	ID_B1|SINE|B4	1411.0	NM_001205286	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	22.61	23.9	18.25	4.83	13.09	14.11	6.31	7.77	7.28	9.54	13.57	5.01
Merged-chr18-12939360-2	chr18	12939249	12939449	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	2492.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.85	4.28	13.69	4.83	5.32	7.21	5.31	18.22	8.65	5.52	9.55	11.59
Merged-chr19-14641912-2	chr19	14641791	14641991	+	717.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43708.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	6.86	5.53	15.4	18.5	5.73	5.02	5.65	14.69	4.92	7.53	13.06	1.57
Merged-chr1-173511816-2	chr1	173511714	173511914	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	24143.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	5.25	3.02	5.7	5.63	7.77	11.29	12.95	4.21	8.85	16.07	9.04	12.53
Merged-chr12-8522925-4	chr12	8522823	8523023	+	717.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	16643.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	2.42	5.28	4.56	3.22	5.32	5.33	5.65	5.55	5.7	7.53	15.58	8.14
Merged-chr12-82189989-2	chr12	82189875	82190075	+	717.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	19959.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	8.48	5.53	3.42	4.02	12.68	7.21	3.65	9.11	9.83	17.57	12.56	8.46
Merged-chr1-133134461-2	chr1	133134363	133134563	+	717.674988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3297.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	8.08	13.58	7.99	4.83	5.32	9.41	4.32	5.21	16.52	22.59	13.06	9.4
Merged-chr6-82808189-3	chr6	82808076	82808276	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33722.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.06	4.28	12.55	8.85	3.27	9.09	8.64	10.63	8.06	13.05	6.03	10.02
Merged-chr6-31213748-1	chr6	31213648	31213848	+	717.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	4726.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.86	9.56	0.0	1.61	8.59	3.76	3.65	7.77	0.39	5.52	2.01	3.45
Merged-chr14-26526390-3	chr14	26526292	26526492	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	8232.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	9.69	5.03	10.84	7.24	8.18	3.14	10.63	10.32	17.31	13.05	6.03	8.46
Merged-chr13-45512671-3	chr13	45512551	45512751	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025508, intron 1 of 8)	intron (NM_025508, intron 1 of 8)	5207.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	5.65	5.53	11.41	9.65	7.77	16.62	14.28	16.04	5.51	3.01	16.08	6.58
Merged-chr6-55416132-2	chr6	55416033	55416233	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	19246.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	6.46	3.02	14.83	10.86	8.18	8.78	10.96	23.3	0.0	2.01	13.57	3.13
Merged-chr16-94647334-3	chr16	94647232	94647432	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	ORR1G|LTR|ERVL-MaLR	35913.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.65	8.05	9.13	4.83	15.96	3.76	2.66	15.76	8.46	12.55	3.52	2.82
Merged-chr16-26105620-3	chr16	26105491	26105691	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173379, exon 1 of 15)	exon (NM_173379, exon 1 of 15)	193.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.85	5.53	6.28	8.04	6.55	4.39	2.33	7.49	4.72	4.02	5.02	9.08
Merged-chr17-29501525-1	chr17	29501425	29501625	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	10480.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.48	8.55	3.42	0.8	1.23	3.45	0.0	0.0	3.15	2.01	3.01	1.88
Merged-chr4-144896499-2	chr4	144896361	144896561	+	717.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	3324.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.44	3.77	6.28	6.44	6.95	4.7	6.31	4.88	7.28	5.02	9.55	3.76
Merged-chr8-70647033-3	chr8	70646934	70647134	+	717.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12704.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	9.29	8.55	14.26	9.25	6.55	5.02	4.32	7.79	10.03	20.08	14.57	11.28
Merged-chr13-97486094-2	chr13	97485989	97486189	+	717.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110430, intron 2 of 2)	intron (NR_110430, intron 2 of 2)	3388.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.04	5.28	6.85	6.44	20.05	9.72	8.64	8.07	11.01	9.04	12.56	10.65
Merged-chr10-53448757-2	chr10	53448668	53448868	+	717.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38886.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	4.44	3.02	0.57	9.25	6.14	10.35	6.98	17.02	8.26	12.05	14.07	9.08
Merged-chr7-25805709-3	chr7	25805584	25805784	+	717.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028775, intron 7 of 8)	intron (NM_028775, intron 7 of 8)	10846.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	7.27	5.79	3.99	8.85	6.55	13.48	2.33	7.4	13.18	20.59	9.55	13.78
Merged-chr15-85646286-3	chr15	85646228	85646428	+	717.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57445.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	9.29	9.31	5.13	6.44	9.0	11.6	9.63	6.42	8.65	8.54	10.55	10.34
Merged-chr11-78343519-3	chr11	78343401	78343601	+	717.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011676)	promoter-TSS (NM_011676)	6.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	11.71	10.31	7.42	8.45	11.86	6.9	8.97	6.42	9.44	11.55	8.54	10.65
Merged-chr8-70613974-3	chr8	70613892	70614092	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2852.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	12.52	8.05	4.56	2.01	9.0	10.03	9.63	3.56	7.28	15.06	5.53	8.46
Merged-chr7-96213284-3	chr7	96213159	96213359	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1588.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	7.67	7.29	9.13	11.66	5.32	5.96	9.97	5.41	2.36	3.51	2.01	4.39
Merged-chr8-83743065-3	chr8	83742974	83743174	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-1763.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	12.52	6.29	2.28	8.45	3.68	9.09	3.99	3.84	7.28	15.57	15.58	18.17
Merged-chr10-19103212-3	chr10	19103111	19103311	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38538.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	10.09	8.05	3.99	6.44	9.0	19.76	7.64	2.44	15.74	14.06	17.59	6.27
Merged-chr11-106659400-1	chr11	106659300	106659500	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-46470.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	3.23	3.27	7.42	2.41	4.91	5.64	1.99	6.48	3.54	9.54	5.02	4.39
Merged-chr1-144316688-1	chr1	144316588	144316788	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67584.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.02	3.52	1.71	0.0	13.91	3.14	4.65	8.3	11.21	2.51	2.51	5.01
Merged-chr19-40687827-1	chr19	40687727	40687927	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	28057.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.21	3.52	0.0	1.61	5.32	4.39	1.99	4.57	5.31	1.0	3.52	2.19
Merged-chr10-121460617-2	chr10	121460516	121460716	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	RLTR25B|LTR|ERVK	15634.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.62	12.83	8.56	2.01	3.68	5.64	5.98	3.14	18.49	13.05	9.04	3.76
Merged-chr11-97394298-1	chr11	97394198	97394398	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_138657, exon 10 of 10)	3' UTR (NM_138657, exon 10 of 10)	31747.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	11.71	4.28	9.13	6.84	7.36	8.47	6.98	6.56	4.92	5.02	5.02	3.13
Merged-chr7-120984060-1	chr7	120983960	120984160	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	1551.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	3.63	1.01	3.99	5.23	7.77	2.51	3.99	5.97	5.9	1.0	3.52	4.39
Merged-chr16-95842939-2	chr16	95842851	95843051	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040484, intron 2 of 3)	intron (NR_040484, intron 2 of 3)	55762.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.25	4.78	0.57	5.63	3.68	2.51	7.64	6.17	9.83	2.01	13.57	7.21
Merged-chr17-35264645-2	chr17	35264496	35264696	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	1473.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	6.06	11.07	6.85	8.85	8.18	7.84	2.99	4.6	7.87	7.03	4.02	12.22
Merged-chr18-80420281-2	chr18	80420172	80420372	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	49395.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	7.27	6.29	5.13	10.05	4.5	4.7	2.33	9.25	10.82	8.54	13.06	4.39
Merged-chr7-92711794-1	chr7	92711694	92711894	+	717.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	29665.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	2.42	3.02	0.0	0.8	0.82	2.82	1.33	2.3	12.0	12.55	24.62	8.46
Merged-chrX-7842994-2	chrX	7842906	7843106	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290537, intron 2 of 9)	intron (NM_001290537, intron 2 of 9)	924.0	NM_001290537	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	8.88	12.58	2.28	1.61	10.64	10.03	3.65	3.11	6.88	12.05	7.54	2.19
Merged-chr5-21654487-1	chr5	21654387	21654587	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	8503.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	1.62	0.75	0.0	0.0	7.77	5.96	2.33	5.89	6.49	5.52	4.52	4.07
Merged-chr7-7282346-1	chr7	7282246	7282446	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001302386)	TTS (NM_001302386)	-4057.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	4.04	4.53	1.14	0.0	6.55	1.57	8.64	6.03	5.11	1.0	1.0	2.51
Merged-chr17-84085934-2	chr17	84085840	84086040	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045458, exon 4 of 6)	non-coding (NR_045458, exon 4 of 6)	7280.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	7.67	5.03	10.27	6.84	15.96	3.14	5.65	12.79	8.46	11.05	9.55	9.71
Merged-chr5-16466488-3	chr5	16466387	16466587	+	717.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87008.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	12.52	11.57	11.98	8.45	10.23	7.53	14.28	9.7	9.64	10.04	23.62	7.52
Merged-chr1-78485477-3	chr1	78485394	78485594	+	717.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2-int|LTR|ERVL-MaLR	3403.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	13.33	5.03	9.13	3.22	8.18	5.96	6.98	14.58	11.41	11.55	13.57	6.89
Merged-chr11-59941637-2	chr11	59941529	59941729	+	717.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6518.0	NR_045273	100504121.0	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	0.81	4.53	1.71	2.41	14.32	10.35	3.65	12.08	7.87	6.03	9.04	7.52
Merged-chr7-126752023-2	chr7	126751925	126752125	+	717.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-7601.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	5.65	2.77	5.7	6.03	9.82	13.8	9.3	7.43	5.11	9.04	17.59	9.08
Merged-chr3-90632170-1	chr3	90632070	90632270	+	717.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	19276.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	7.27	8.55	12.55	8.85	2.45	2.82	1.33	4.74	5.9	2.51	8.04	6.58
Merged-chr9-120052415-1	chr9	120052315	120052515	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	15881.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	1.21	2.77	0.0	5.63	9.0	11.92	11.63	5.97	1.57	0.0	0.0	0.0
Merged-chr5-125341872-3	chr5	125341704	125341904	+	717.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205082)	promoter-TSS (NM_001205082)	-710.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	10.5	6.79	15.97	3.22	4.91	6.59	7.31	6.03	6.1	7.03	3.52	3.76
Merged-chr12-71342488-1	chr12	71342388	71342588	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32604.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	6.46	7.04	2.28	8.45	7.77	5.64	9.97	6.87	0.98	6.53	2.51	1.57
Merged-chr1-59593605-3	chr1	59593514	59593714	+	717.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	69320.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	2.83	7.04	10.27	9.25	12.27	14.42	12.95	10.23	7.47	11.55	7.03	7.83
Merged-chr5-62750596-1	chr5	62750496	62750696	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	MTA_Mm|LTR|ERVL-MaLR	15581.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	2.83	7.55	5.7	2.41	6.95	7.84	7.97	8.13	8.06	3.01	5.53	5.64
Merged-chr15-76766918-1	chr15	76766818	76767018	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-43073.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	6.46	8.3	3.99	2.41	9.82	6.27	2.99	6.45	11.8	6.53	7.54	3.13
Merged-chr14-15201176-1	chr14	15201076	15201276	+	717.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-236447.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	3.23	0.5	3.42	5.23	0.0	0.0	0.0	0.28	14.36	16.57	22.11	3.45
Merged-chr6-47176212-3	chr6	47176110	47176310	+	717.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68186.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	7.27	6.54	5.13	13.27	12.27	6.9	6.98	13.04	10.03	6.53	13.06	17.54
Merged-chr5-115060268-3	chr5	115060168	115060368	+	717.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	Lx5c|LINE|L1	47694.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	10.09	4.53	11.41	4.83	9.0	10.35	10.3	15.5	12.19	4.52	12.56	6.58
Merged-chr6-42296349-3	chr6	42296244	42296444	+	717.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9659.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	10.09	6.79	2.85	6.44	7.36	4.39	4.98	16.96	15.14	11.05	11.56	6.89
Merged-chr16-91512564-3	chr16	91512484	91512684	+	717.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14960.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	11.31	7.8	9.7	8.45	9.0	14.11	2.99	4.96	12.0	11.05	14.07	6.89
Merged-chr13-93248898-2	chr13	93248787	93248987	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54870.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	4.85	4.02	9.13	7.24	10.64	6.27	8.97	6.98	4.13	1.0	9.04	5.95
Merged-chr7-98289745-2	chr7	98289648	98289848	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	B2_Mm2|SINE|B2	19794.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	9.29	3.52	4.56	15.28	4.09	5.96	7.97	4.12	14.55	14.06	6.03	8.46
Merged-chr16-92403202-1	chr16	92403102	92403302	+	717.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-3124.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	1.62	3.77	1.71	3.62	8.59	6.9	4.32	7.57	3.74	7.03	9.04	4.7
Merged-chr10-62502155-2	chr10	62502048	62502248	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B4|SINE|B4	5609.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.25	6.79	14.26	2.01	12.68	8.78	2.99	7.99	12.0	5.52	6.53	2.82
Merged-chr10-12867571-2	chr10	12867449	12867649	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5814.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	8.48	3.77	2.28	2.41	10.23	4.7	6.31	4.85	6.88	6.03	8.54	5.01
Merged-chr4-45494190-2	chr4	45494094	45494294	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	36634.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	8.08	6.54	7.99	8.45	9.82	6.27	5.31	10.93	2.36	3.01	5.53	3.76
Merged-chr15-73187069-2	chr15	73186961	73187161	+	717.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2114.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	9.69	3.52	6.28	2.41	10.23	10.03	2.99	4.93	7.67	16.07	13.57	6.27
Merged-chr11-102319510-3	chr11	102319429	102319629	+	717.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302954)	promoter-TSS (NM_001302954)	-433.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	7.67	10.82	15.4	6.44	4.5	8.47	3.32	8.44	9.24	11.55	9.04	6.89
Merged-chr11-119363776-2	chr11	119363663	119363863	+	717.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 6 of 16)	intron (NM_178743, intron 6 of 16)	8206.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	5.65	6.04	3.42	4.42	7.77	10.66	7.64	4.63	10.42	9.54	8.04	4.39
Merged-chr13-20209057-3	chr13	20208951	20209151	+	717.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	118544.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.48	7.29	11.41	18.5	12.68	7.53	13.95	15.11	8.65	16.07	14.57	8.46
Merged-chr2-43722875-3	chr2	43722774	43722974	+	717.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25950.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.23	9.81	8.56	8.85	6.14	9.41	3.65	9.28	18.29	4.52	12.56	9.71
Merged-chr4-59236573-3	chr4	59236439	59236639	+	717.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23512.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	9.29	7.29	13.69	5.63	18.82	6.27	15.61	11.36	7.47	7.03	6.53	10.02
Merged-chr1-151564600-3	chr1	151564506	151564706	+	717.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6767.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	16.56	6.54	11.98	10.86	8.18	14.42	7.31	12.31	13.57	8.03	25.12	11.28
Merged-chr15-73755331-2	chr15	73755230	73755430	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166389, exon 4 of 6)	exon (NM_001166389, exon 4 of 6)	7304.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	11.71	1.76	8.56	4.83	2.45	7.84	3.32	7.99	9.44	5.02	8.54	9.08
Merged-chr1-93727128-1	chr1	93727028	93727228	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	4798.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	11.31	3.77	5.13	0.8	0.82	7.84	1.99	6.84	5.11	7.53	9.55	6.58
Merged-chr3-103605851-1	chr3	103605751	103605951	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	29725.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	1.21	1.01	2.28	2.41	2.45	1.88	5.98	5.92	4.33	4.52	9.04	2.19
Merged-chr9-109894949-1	chr9	109894849	109895049	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5306.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	4.85	2.77	10.27	4.83	3.68	8.47	3.99	5.24	9.24	8.03	12.56	4.07
Merged-chr7-29306857-1	chr7	29306757	29306957	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	2852.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	6.86	0.0	1.14	2.41	4.09	5.33	5.31	6.62	4.33	8.54	1.51	1.57
Merged-chr8-105637941-1	chr8	105637841	105638041	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	-467.0	NR_151742	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	4.85	1.51	1.14	1.61	3.27	3.76	5.98	7.29	2.56	3.01	10.05	3.13
Merged-chr3-115687051-1	chr3	115686951	115687151	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28004.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.04	2.77	0.0	7.24	7.36	4.39	3.65	8.78	9.24	3.51	3.52	4.39
Merged-chr14-16559578-1	chr14	16559478	16559678	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289761, intron 2 of 8)	intron (NM_001289761, intron 2 of 8)	15898.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	9.29	10.06	14.26	10.05	3.27	3.45	3.65	3.79	0.39	0.0	0.0	0.94
Merged-chr13-49273010-1	chr13	49272910	49273110	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-24304.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	3.23	1.76	0.0	2.82	2.86	7.21	3.32	6.53	5.7	2.51	3.52	4.07
Merged-chr6-106785467-1	chr6	106785367	106785567	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	14620.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	4.04	2.01	2.28	4.42	7.36	1.88	4.32	4.6	2.56	5.02	2.01	3.76
Merged-chr13-114460776-1	chr13	114460676	114460876	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-1825.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	7.27	5.79	5.13	4.02	2.86	7.21	3.32	5.92	4.92	7.53	9.04	4.7
Merged-chr6-119499483-1	chr6	119499383	119499583	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	19815.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	6.06	3.02	2.85	1.61	7.36	3.76	2.99	6.62	4.72	2.01	8.04	2.51
Merged-chr11-97315259-1	chr11	97315159	97315359	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-457.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	4.04	2.01	2.28	1.61	10.64	12.54	4.98	6.39	5.11	1.0	1.0	6.27
Merged-chr9-9647881-1	chr9	9647781	9647981	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-246550.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	1.62	1.01	1.71	1.21	2.86	0.94	7.31	6.25	5.9	0.5	12.56	2.51
Merged-chr7-116323775-1	chr7	116323675	116323875	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10415.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.23	2.26	3.42	2.41	6.14	4.39	1.0	7.51	7.28	5.52	7.03	1.88
Merged-chr17-43050768-1	chr17	43050668	43050868	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	34213.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.81	4.53	1.14	2.82	4.91	5.96	6.31	5.64	0.2	1.0	0.0	1.25
Merged-chr18-62173412-1	chr18	62173312	62173512	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6569.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	13.33	4.78	8.56	2.41	6.55	14.11	4.65	7.15	8.85	14.06	8.04	2.51
Merged-chr7-114527969-2	chr7	114527870	114528070	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 12 of 15)	intron (NM_011055, intron 12 of 15)	35002.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	11.31	4.53	12.55	5.63	5.32	5.02	8.64	11.94	7.87	12.55	9.04	6.58
Merged-chr8-124347300-1	chr8	124347200	124347400	+	717.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86636.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	3.63	3.27	7.99	1.61	1.64	7.84	3.32	2.1	11.01	5.02	15.07	6.27
Merged-chr3-96269132-3	chr3	96269042	96269242	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	488.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	8.48	13.58	3.99	12.07	6.14	4.08	2.33	4.37	14.16	6.03	12.06	15.35
Merged-chr2-114199277-1	chr2	114199177	114199377	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	2155.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	1.62	3.02	6.85	5.23	2.86	10.98	4.98	7.18	9.24	9.04	5.02	2.19
Merged-chr7-19342189-3	chr7	19342080	19342280	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2891.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	9.69	5.53	10.84	4.02	7.36	7.53	5.65	3.28	19.67	21.09	27.64	17.23
Merged-chr14-66232423-1	chr14	66232323	66232523	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18599.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.44	4.02	1.14	2.01	11.86	14.42	4.98	6.11	11.21	15.57	16.58	12.22
Merged-chr1-21830066-1	chr1	21829966	21830166	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	131876.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	4.85	4.28	6.28	3.22	2.86	7.53	1.33	9.0	3.54	0.0	4.52	1.57
Merged-chr15-5236735-3	chr15	5236622	5236822	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	7465.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	16.15	5.79	5.13	11.66	11.05	8.47	1.99	9.62	12.0	14.06	14.07	6.27
Merged-chr8-77436379-2	chr8	77436241	77436441	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80715.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.63	1.51	2.85	2.41	3.27	9.41	2.99	5.13	4.13	7.53	2.51	3.76
Merged-chr1-64697448-1	chr1	64697348	64697548	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097644, intron 1 of 9)	intron (NM_001097644, intron 1 of 9)	6103.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	4.04	4.02	5.7	7.24	2.86	6.59	2.66	7.18	7.08	5.02	9.04	5.95
Merged-chr15-31586657-2	chr15	31586561	31586761	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181588, intron 4 of 5)	intron (NM_181588, intron 4 of 5)	14878.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	4.85	11.07	6.28	6.03	5.73	9.72	7.64	6.79	12.78	12.05	7.54	4.39
Merged-chr5-36748181-1	chr5	36748081	36748281	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_133724, exon 1 of 1)	exon (NM_133724, exon 1 of 1)	498.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	10.09	2.77	3.99	13.27	4.09	4.39	4.32	2.66	8.85	8.03	9.55	7.21
Merged-chr1-162612756-1	chr1	162612656	162612856	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26394.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	0.0	2.01	0.0	1.61	1.64	7.21	1.0	5.64	3.15	1.51	4.02	3.76
Merged-chr10-14134124-1	chr10	14134024	14134224	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358782, intron 6 of 9)	intron (NM_001358782, intron 6 of 9)	167745.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	4.53	2.28	3.22	1.64	3.76	4.98	5.36	0.39	1.0	1.0	1.25
Merged-chr3-53029326-1	chr3	53029226	53029426	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12103.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	1.21	4.02	9.7	5.63	8.59	3.45	3.32	7.04	1.77	2.51	3.01	1.88
Merged-chr16-49016844-1	chr16	49016744	49016944	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172616, intron 19 of 20)	intron (NM_172616, intron 19 of 20)	22656.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	3.63	3.02	3.42	6.44	2.05	5.33	6.31	9.34	2.56	6.03	2.01	2.19
Merged-chr6-46142295-1	chr6	46142195	46142395	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	ID_B1|SINE|B4	1082234.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	5.65	4.53	1.71	2.41	9.0	6.9	7.31	10.49	2.95	9.04	8.54	3.76
Merged-chr5-59853124-1	chr5	59853024	59853224	+	717.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	132878.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	6.46	2.01	7.99	1.21	8.18	5.02	6.64	2.97	12.39	1.0	11.05	10.02
Merged-chr11-115003435-1	chr11	115003335	115003535	+	717.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1555.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.81	1.76	0.0	0.0	2.45	3.76	1.66	5.02	5.51	4.02	10.55	7.83
Merged-chr14-63144341-3	chr14	63144294	63144494	+	716.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010191)	TTS (NM_010191)	21932.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.85	10.06	2.85	6.03	15.14	13.17	6.31	10.6	7.08	8.54	9.04	12.22
Merged-chr10-18188709-2	chr10	18188598	18188798	+	716.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	L1MC5|LINE|L1	22192.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.04	6.29	6.85	4.02	7.77	5.33	6.64	11.64	8.46	5.52	15.58	9.71
Merged-chr7-45105660-2	chr7	45105556	45105756	+	716.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1834.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	6.46	8.05	3.99	4.42	10.23	9.72	1.99	8.92	7.28	2.01	7.54	2.51
Merged-chr19-8018824-2	chr19	8018730	8018930	+	716.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-52803.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	4.85	2.77	1.71	2.41	9.82	18.81	10.3	4.6	12.19	15.57	8.54	4.07
Merged-chr8-33618036-2	chr8	33617946	33618146	+	716.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 6 of 6)	B3|SINE|B2	18425.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	2.02	4.02	6.28	4.02	7.77	5.02	6.31	6.36	8.85	3.51	13.06	8.77
Merged-chr10-82863381-3	chr10	82863228	82863428	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	2987.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	4.85	3.27	7.42	4.42	0.41	6.9	2.99	4.49	7.67	6.03	8.04	6.27
Merged-chr17-35814828-3	chr17	35814725	35814925	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6888.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	2.02	7.8	7.42	7.24	5.32	3.14	4.32	1.37	4.52	12.05	3.01	5.64
Merged-chr9-64784979-3	chr9	64784845	64785045	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26066.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.46	9.31	9.13	6.84	16.77	10.35	4.98	4.4	12.59	11.55	11.05	7.21
Merged-chr3-65549929-3	chr3	65549808	65550008	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-20494.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	10.09	5.28	4.56	7.64	13.91	8.47	13.62	18.62	9.05	11.55	11.56	12.53
Merged-chr17-86301344-3	chr17	86301223	86301423	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-14145.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.02	10.31	5.13	13.27	13.09	4.39	2.99	6.22	5.31	11.55	11.56	3.76
Merged-chrX-133947566-3	chrX	133947447	133947647	+	716.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290719, exon 13 of 13)	3' UTR (NM_001290719, exon 13 of 13)	34265.0	NM_001290718	27359.0	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	14.54	10.31	6.85	11.26	9.0	7.53	6.64	12.2	8.85	6.53	7.54	4.39
Merged-chr18-74882571-2	chr18	74882469	74882669	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78694.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	4.04	2.77	5.13	8.04	10.64	1.25	8.64	12.67	14.75	4.52	8.54	8.14
Merged-chr14-121937835-2	chr14	121937754	121937954	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-22080.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	5.25	6.79	6.85	6.84	8.18	8.15	11.96	3.87	14.36	6.03	27.13	5.95
Merged-chr18-4369317-2	chr18	4369230	4369430	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040328)	TTS (NR_040328)	-6262.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	4.44	4.02	9.13	2.01	7.77	6.59	5.98	7.12	11.8	3.51	10.55	5.95
Merged-chr1-172306378-2	chr1	172306283	172306483	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5984.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.23	7.55	4.56	5.63	7.36	11.29	3.99	13.23	7.67	4.52	10.05	4.07
Merged-chr19-17131310-2	chr19	17131210	17131410	+	716.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175192.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	4.85	7.29	7.42	1.61	8.18	3.76	6.31	7.49	4.52	6.53	5.53	4.7
Merged-chr10-125213239-2	chr10	125213143	125213343	+	716.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95573.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	10.5	5.53	6.85	13.27	9.0	7.84	13.95	18.67	9.44	7.53	2.51	3.76
Merged-chr4-145026793-2	chr4	145026687	145026887	+	716.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	133650.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.44	6.79	11.98	12.47	4.09	5.96	9.3	16.93	7.28	6.53	5.02	1.88
Merged-chr2-26130195-3	chr2	26130114	26130314	+	716.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	-7403.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	10.09	10.06	11.98	8.85	7.36	10.66	3.32	4.43	11.21	8.54	3.01	18.48
Merged-chr3-138742255-2	chr3	138742144	138742344	+	716.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019571)	promoter-TSS (NM_019571)	36.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	2.42	3.77	2.85	3.22	9.82	6.59	5.98	8.72	8.26	6.53	14.07	4.7
Merged-chr11-68472644-3	chr11	68472541	68472741	+	716.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-30378.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	10.5	5.28	5.7	14.48	23.32	15.37	8.64	6.34	20.06	10.04	31.66	8.14
Merged-chr4-135242565-3	chr4	135242460	135242660	+	716.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	30200.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.25	9.06	13.12	5.23	3.68	10.03	3.32	5.72	9.05	12.55	3.52	4.39
Merged-chr8-106697188-1	chr8	106697088	106697288	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 5 of 17)	MTD|LTR|ERVL-MaLR	14120.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	3.63	5.79	3.99	1.21	5.73	4.39	3.99	3.25	3.93	4.52	5.02	4.7
Merged-chr9-22368440-1	chr9	22368340	22368540	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028390, exon 8 of 24)	exon (NM_028390, exon 8 of 24)	20766.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	8.48	3.02	7.99	6.44	9.0	8.15	0.66	7.57	6.29	7.03	10.05	5.95
Merged-chr1-184025394-1	chr1	184025294	184025494	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8604.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	5.65	4.78	5.13	5.23	6.55	6.59	6.31	6.56	11.01	0.5	6.53	7.52
Merged-chr2-78059924-1	chr2	78059824	78060024	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	8747.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	5.65	5.28	3.99	0.0	6.55	9.41	6.64	5.89	6.69	6.53	17.08	3.45
Merged-chr17-34887700-3	chr17	34887626	34887826	+	716.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-5626.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	6.46	10.82	11.41	1.61	5.73	18.19	6.98	0.0	15.74	10.54	10.05	1.88
Merged-chr9-86016666-1	chr9	86016566	86016766	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	173814.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	2.42	0.5	0.0	1.61	9.0	5.64	7.97	5.83	1.38	3.51	0.0	0.94
Merged-chr3-95296258-3	chr3	95296158	95296358	+	716.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_199475)	TTS (NM_199475)	10546.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	10.09	5.28	5.7	7.64	10.64	8.47	2.66	7.29	14.55	13.05	16.08	15.04
Merged-chrX-60000011-2	chrX	59999993	60000193	+	716.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305797, intron 1 of 6)	intron (NM_001305797, intron 1 of 6)	629.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.0	1.26	0.0	2.41	2.45	3.45	6.98	0.22	3.34	5.52	5.02	1.25
Merged-chr2-11279012-2	chr2	11278945	11279145	+	716.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 13 of 17)	intron (NM_008859, intron 13 of 17)	-60444.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	4.04	4.02	7.99	2.01	9.0	1.88	9.63	6.28	9.05	3.01	4.02	6.27
Merged-chr5-21091410-2	chr5	21091310	21091510	+	716.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35499.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.04	3.52	1.14	5.63	6.55	12.54	8.3	6.9	9.44	10.54	20.1	8.77
Merged-chr14-76193402-3	chr14	76193330	76193530	+	716.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58032.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	15.75	7.8	11.41	4.02	6.55	5.33	2.33	7.6	9.83	7.53	11.05	9.4
Merged-chr13-59728578-3	chr13	59728477	59728677	+	716.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177711, exon 4 of 4)	exon (NM_177711, exon 4 of 4)	3175.0	NM_177711	238663.0	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	9.29	4.78	14.83	18.1	14.73	6.27	7.97	7.15	11.01	7.03	4.52	9.71
Merged-chr2-148520925-3	chr2	148520821	148521021	+	716.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77386.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.65	5.03	15.4	9.65	13.5	10.35	4.65	10.85	12.98	9.54	12.06	9.08
Merged-chr3-55103714-2	chr3	55103615	55103815	+	716.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-8393.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	2.02	3.77	4.56	2.41	7.77	7.21	2.66	12.17	9.44	8.54	14.57	12.53
Merged-chr4-46487512-2	chr4	46487397	46487597	+	716.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	4.04	6.54	3.42	3.62	10.64	5.96	3.99	10.15	9.64	2.01	9.55	7.52
Merged-chr3-96636739-3	chr3	96636637	96636837	+	716.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162387, exon 2 of 5)	exon (NM_001162387, exon 2 of 5)	890.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	14.13	11.57	15.4	8.85	4.5	5.02	3.65	14.27	9.24	11.55	7.54	11.28
Merged-chr11-121340521-3	chr11	121340420	121340620	+	716.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13927.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	7.27	10.31	18.83	8.04	11.05	11.6	11.63	7.74	9.44	2.01	11.56	10.34
Merged-chr4-148165107-3	chr4	148164988	148165188	+	716.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176848, exon 4 of 6)	exon (NM_176848, exon 4 of 6)	4420.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	5.25	7.04	11.41	8.45	3.68	6.27	9.3	4.96	12.0	11.05	8.04	5.33
Merged-chr6-24515047-3	chr6	24514914	24515114	+	716.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172535)	promoter-TSS (NM_172535)	53.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	5.25	7.04	5.7	7.24	10.23	7.53	6.64	7.46	5.9	6.03	14.57	5.01
Merged-chr9-32650992-1	chr9	32650892	32651092	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45050.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.46	3.52	2.28	4.02	2.86	5.96	5.98	7.09	2.16	5.02	6.03	4.39
Merged-chrX-20117913-2	chrX	20117800	20118000	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177353, intron 15 of 16)	intron (NM_177353, intron 15 of 16)	58330.0	NM_021715	60322.0	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	4.04	9.56	6.85	8.45	7.36	7.84	5.98	9.64	6.88	22.59	12.06	6.89
Merged-chr9-100377859-2	chr9	100377754	100377954	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108619.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	8.08	9.56	2.28	4.42	6.55	8.15	6.98	12.62	8.06	5.02	2.51	2.19
Merged-chr8-104321927-1	chr8	104321827	104322027	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028524)	promoter-TSS (NM_028524)	-300.0	NM_028524	75502.0	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	4.04	8.55	6.28	5.23	6.14	7.53	3.65	7.91	5.9	8.54	21.61	6.58
Merged-chr11-60802266-2	chr11	60802162	60802362	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009171, intron 3 of 11)	PB1D10|SINE|Alu	9003.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	6.46	7.04	6.85	4.42	10.64	9.72	1.99	3.62	10.62	3.51	6.03	10.02
Merged-chr9-53356966-1	chr9	53356866	53357066	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176846, intron 4 of 5)	intron (NM_176846, intron 4 of 5)	-27057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	5.65	5.03	1.71	6.03	8.59	3.76	3.32	6.25	4.72	3.51	6.03	9.08
Merged-chr11-115172972-2	chr11	115172876	115173076	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	9635.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	5.65	1.76	5.7	0.0	5.73	12.54	3.32	5.89	9.83	14.06	10.55	3.76
Merged-chr9-104079581-2	chr9	104079482	104079682	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175324, intron 5 of 19)	B3|SINE|B2	15879.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	2.83	5.28	4.56	7.24	2.05	13.17	2.33	7.23	14.36	7.03	9.04	1.57
Merged-chr2-119271200-2	chr2	119271077	119271277	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145530)	promoter-TSS (NM_145530)	49.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	9.69	7.29	9.7	6.84	9.41	10.98	2.66	10.29	6.1	5.52	9.55	10.65
Merged-chr13-41461752-2	chr13	41461650	41461850	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	25610.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.86	4.02	7.42	4.83	7.77	9.09	2.66	14.19	7.67	9.04	12.56	5.01
Merged-chr2-164910804-2	chr2	164910723	164910923	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_199027, exon 2 of 28)	5' UTR (NM_199027, exon 2 of 28)	927.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.23	6.79	1.71	5.63	2.05	6.59	1.99	8.86	9.05	6.53	9.04	5.64
Merged-chr8-117537087-3	chr8	117537000	117537200	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	B4A|SINE|B4	38825.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	9.69	8.3	5.7	2.41	9.82	5.33	3.32	6.95	10.62	5.02	5.53	7.83
Merged-chr1-132011935-3	chr1	132011853	132012053	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	4348.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	5.65	7.04	11.98	4.02	4.91	9.09	3.99	9.79	10.23	9.04	4.52	6.58
Merged-chr15-101264593-1	chr15	101264493	101264693	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2253.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.23	2.77	2.28	1.21	4.09	0.63	8.64	2.69	3.34	4.02	4.02	2.51
Merged-chr3-123332538-1	chr3	123332438	123332638	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	53452.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	3.63	2.52	6.28	7.24	3.68	5.64	8.97	5.75	3.54	3.51	7.54	3.76
Merged-chr14-17433127-2	chr14	17433014	17433214	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-227846.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.23	5.03	1.14	4.83	3.68	4.08	7.64	7.23	11.8	5.52	14.07	7.52
Merged-chr1-171064629-3	chr1	171064542	171064742	+	716.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106103)	promoter-TSS (NR_106103)	10.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	10.09	6.29	9.7	9.65	6.14	5.02	12.62	9.48	7.08	13.05	11.05	9.4
Merged-chr11-44617202-3	chr11	44617074	44617274	+	716.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007897)	promoter-TSS (NM_007897)	-926.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	8.48	7.04	4.56	12.87	9.0	16.62	3.65	5.97	9.05	4.02	11.05	5.33
Merged-chr16-32666429-2	chr16	32666333	32666533	+	716.43335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033493, exon 2 of 3)	non-coding (NR_033493, exon 2 of 3)	1764.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	4.04	6.29	6.85	1.21	9.0	13.48	8.97	5.21	9.64	17.57	15.07	8.77
Merged-chr1-180794339-3	chr1	180794294	180794494	+	716.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19211.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.06	7.55	1.14	5.23	5.73	14.74	5.65	4.15	6.69	9.04	6.03	11.9
Merged-chr10-75298758-3	chr10	75298641	75298841	+	716.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-18136.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	5.65	5.03	11.98	3.22	6.14	13.17	8.3	10.6	9.64	9.54	15.58	7.21
Merged-chr14-78725190-2	chr14	78725143	78725343	+	716.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 1 of 29)	CpG-4677	7486.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	8.88	6.04	4.56	8.04	5.32	9.09	3.99	11.27	3.74	5.02	4.52	5.64
Merged-chr18-84089278-6	chr18	84089124	84089324	+	716.347229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	1066.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	1.21	4.02	9.13	0.8	4.5	1.57	1.66	2.47	6.1	3.01	9.55	4.39
Merged-chrX-98969820-2	chrX	98969732	98969932	+	716.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32051.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	9.69	5.28	10.84	9.25	7.77	5.02	8.3	10.71	7.67	5.52	7.54	5.64
Merged-chr7-92965295-2	chr7	92965197	92965397	+	716.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90044.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.63	5.53	1.14	7.64	6.95	10.66	0.66	8.05	15.14	7.03	11.56	7.52
Merged-chr2-137116116-1	chr2	137116016	137116216	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013822, intron 1 of 25)	CpG-8595	404.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	6.46	3.52	7.99	1.61	4.91	8.47	10.3	5.16	3.93	3.01	5.53	4.39
Merged-chr16-14123407-1	chr16	14123307	14123507	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	35867.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.25	7.29	4.56	5.63	4.09	6.27	4.32	7.85	1.97	0.0	4.52	1.25
Merged-chr9-20961681-3	chr9	20961590	20961790	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1802.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	6.06	7.8	8.56	10.05	15.14	10.35	18.27	15.87	10.03	9.54	15.07	6.58
Merged-chr3-41522950-3	chr3	41522847	41523047	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130791, exon 2 of 6)	non-coding (NR_130791, exon 2 of 6)	5527.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	2.83	8.55	3.99	10.86	4.5	7.84	13.95	19.49	1.97	5.02	9.55	7.21
Merged-chr3-104758631-2	chr3	104758525	104758725	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	18922.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	3.63	2.26	0.0	3.22	6.95	8.15	4.65	13.23	12.0	9.04	8.04	8.77
Merged-chr2-181411276-3	chr2	181411175	181411375	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13113.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	8.48	7.8	7.42	9.65	9.41	12.86	3.99	9.2	10.23	10.04	15.58	12.53
Merged-chr1-46066828-3	chr1	46066719	46066919	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160386)	promoter-TSS (NM_001160386)	81.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.81	1.76	2.85	12.47	5.73	7.84	2.66	6.22	12.78	4.52	10.55	10.34
Merged-chr9-78553133-1	chr9	78553033	78553233	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172773, intron 8 of 10)	intron (NM_172773, intron 8 of 10)	34912.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	5.65	8.55	5.7	4.42	6.95	5.96	4.98	7.43	6.69	3.01	3.52	6.27
Merged-chr7-45682904-3	chr7	45682814	45683014	+	716.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271578, intron 3 of 3)	intron (NM_001271578, intron 3 of 3)	-1108.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	10.09	8.55	8.56	10.46	6.14	16.31	3.99	4.57	12.19	29.12	31.15	15.04
Merged-chr8-3387485-3	chr8	3387390	3387590	+	716.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033378, intron 7 of 10)	intron (NM_001033378, intron 7 of 10)	-5518.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	10.09	9.56	8.56	4.02	9.0	10.66	13.95	6.64	9.83	10.54	12.06	2.82
Merged-chr7-30761982-2	chr7	30761885	30762085	+	716.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1771.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	10.9	4.02	9.7	12.47	6.55	7.21	6.98	11.3	7.47	4.02	7.54	3.45
Merged-chr11-9347898-2	chr11	9347828	9348028	+	716.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 28 of 61)	MIRb|SINE|MIR	155986.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.02	3.77	1.71	2.41	3.68	2.51	9.3	5.3	5.7	9.54	12.06	5.01
Merged-chr2-172397669-2	chr2	172397582	172397782	+	716.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	L1_Mus2|LINE|L1	3888.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	1.62	1.26	1.14	0.8	6.95	10.98	12.95	3.84	10.42	7.03	14.57	8.46
Merged-chr3-79814004-3	chr3	79813933	79814133	+	716.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027495, exon 12 of 12)	3' UTR (NM_027495, exon 12 of 12)	28629.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	4.44	6.54	7.99	6.03	4.91	9.72	3.99	3.79	14.95	11.05	15.58	8.14
Merged-chr16-91864344-3	chr16	91864224	91864424	+	716.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	67306.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.44	5.79	4.56	12.47	5.73	10.98	8.64	10.49	3.34	4.02	13.57	7.52
Merged-chr13-37557905-3	chr13	37557806	37558006	+	716.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	212561.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.08	3.52	6.28	11.26	13.91	6.59	5.31	10.82	11.8	5.52	12.56	5.33
Merged-chr6-113061379-2	chr6	113061287	113061487	+	716.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	15085.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	7.27	4.53	4.56	5.63	6.55	9.09	5.65	14.13	11.21	13.05	20.1	8.14
Merged-chr2-144237513-3	chr2	144237465	144237665	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	28637.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	7.67	7.04	3.99	3.22	8.18	1.88	5.65	1.63	5.31	13.05	7.03	7.83
Merged-chr7-100853531-3	chr7	100853419	100853619	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9894.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	8.48	6.54	7.99	5.23	10.23	5.96	5.98	11.02	9.24	8.54	5.53	6.89
Merged-chr5-33003759-3	chr5	33003666	33003866	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15050.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	8.48	6.79	10.27	10.05	12.68	7.53	13.29	16.63	4.52	14.06	12.06	5.33
Merged-chr7-67973666-3	chr7	67973575	67973775	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	21418.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	10.09	9.31	11.41	12.87	8.59	18.81	11.96	22.32	11.01	13.05	11.05	5.33
Merged-chr4-35065700-2	chr4	35065580	35065780	+	716.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-86375.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	8.88	13.33	9.13	17.7	3.27	4.08	6.64	4.79	3.15	2.51	1.0	5.64
Merged-chr13-52258607-2	chr13	52258500	52258700	+	716.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161859.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	7.67	3.52	5.13	6.44	15.96	7.53	6.98	12.0	8.85	5.02	6.53	5.01
Merged-chr1-16093209-2	chr1	16093097	16093297	+	716.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001243238, exon 1 of 5)	5' UTR (NM_001243238, exon 1 of 5)	128.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	10.09	8.55	3.42	8.45	8.59	3.76	10.3	7.91	4.72	7.53	7.03	7.83
Merged-chr16-16912085-3	chr16	16911994	16912194	+	716.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176833, intron 3 of 7)	intron (NM_176833, intron 3 of 7)	15625.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	7.27	5.28	15.97	0.8	14.32	6.27	8.3	10.99	14.16	21.09	13.06	5.64
Merged-chr5-8660408-4	chr5	8660331	8660531	+	716.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011076, intron 3 of 29)	CpG	-37479.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	9.29	7.55	5.13	11.26	19.23	5.64	13.62	9.59	10.62	7.53	8.04	9.4
Merged-chr16-4909335-3	chr16	4909209	4909409	+	716.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	23209.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.63	4.28	13.69	5.63	8.18	5.64	4.65	7.09	4.92	7.53	8.04	7.52
Merged-chr17-84187203-3	chr17	84187103	84187303	+	716.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001806, intron 1 of 1)	CpG	744.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	10.5	8.3	2.85	9.25	13.09	12.23	5.65	11.16	7.47	9.54	5.53	8.46
Merged-chr3-84129406-3	chr3	84129331	84129531	+	716.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029797, intron 4 of 7)	intron (NM_029797, intron 4 of 7)	26355.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	6.86	8.8	8.56	5.63	6.14	9.09	12.29	17.5	7.47	5.52	11.56	6.27
Merged-chr16-87755091-3	chr16	87754968	87755168	+	716.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56114.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	9.69	2.26	11.41	6.84	10.64	6.59	4.32	8.92	19.28	20.59	11.05	10.65
Merged-chr16-23337491-3	chr16	23337400	23337600	+	716.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	47030.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	8.88	8.3	11.41	2.41	12.27	19.76	4.32	5.02	14.75	16.57	26.13	16.92
Merged-chrX-163261458-3	chrX	163261345	163261545	+	716.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	91119.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	11.71	6.04	10.84	14.08	8.18	6.27	13.95	11.3	10.82	13.05	12.06	10.96
Merged-chr10-42962902-1	chr10	42962802	42963002	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	28260.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	7.27	6.04	7.99	0.8	3.68	3.45	5.98	5.83	1.57	3.01	5.02	4.7
Merged-chr6-134261585-1	chr6	134261485	134261685	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-134744.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.86	5.79	4.56	4.83	6.14	12.23	13.95	6.93	9.64	3.51	4.52	2.19
Merged-chr17-34129140-1	chr17	34129040	34129240	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	3622.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	9.29	8.8	5.13	0.8	3.68	8.78	4.32	0.64	3.34	6.53	5.02	3.45
Merged-chr19-18548709-1	chr19	18548609	18548809	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83104.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	2.02	1.01	0.0	1.61	0.82	2.2	4.65	0.53	1.38	2.01	4.02	1.57
Merged-chr12-72407074-1	chr12	72406974	72407174	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1980.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	1.01	3.42	0.8	2.45	2.2	0.0	1.68	9.64	10.04	11.05	2.51
Merged-chr8-88619378-1	chr8	88619278	88619478	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16750.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.81	2.01	13.12	0.0	6.95	5.64	5.98	6.76	2.36	0.5	4.02	3.13
Merged-chr4-28949299-1	chr4	28949199	28949399	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010141, intron 11 of 16)	intron (NM_010141, intron 11 of 16)	-118780.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	2.42	4.53	1.14	3.22	6.95	4.39	3.32	4.35	7.67	15.06	15.58	3.45
Merged-chr17-57332480-2	chr17	57332372	57332572	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26214.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.85	7.04	3.42	0.8	11.05	9.72	3.65	4.43	12.78	8.54	14.07	4.39
Merged-chr9-13430469-1	chr9	13430369	13430569	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028271)	promoter-TSS (NR_028271)	-892.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.81	2.52	0.57	10.86	2.45	3.14	6.64	9.87	3.54	2.01	3.52	3.45
Merged-chr16-34114856-3	chr16	34114764	34114964	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147826.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	12.92	7.29	4.56	7.24	11.45	6.59	3.99	8.19	11.41	11.55	4.02	5.95
Merged-chr9-108309028-1	chr9	108308928	108309128	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	2231.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	1.62	1.51	2.85	2.82	0.82	0.0	0.0	0.59	3.34	1.0	2.51	1.57
Merged-chr18-65674714-1	chr18	65674614	65674814	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-23554.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.44	2.52	7.99	4.83	3.27	8.47	4.98	7.01	0.79	0.0	3.01	3.45
Merged-chr18-3282457-1	chr18	3282357	3282557	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110855)	promoter-TSS (NM_001110855)	-710.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	2.42	4.78	2.28	5.63	8.59	2.51	3.32	7.99	6.88	9.04	6.53	0.63
Merged-chr14-26641382-1	chr14	26641282	26641482	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	B2_Mm2|SINE|B2	3248.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	4.04	4.02	2.85	5.23	5.73	6.27	0.66	2.02	10.82	9.54	6.03	2.82
Merged-chr15-66730228-1	chr15	66730128	66730328	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009375, intron 27 of 47)	MLT1H|LTR|ERVL-MaLR	59458.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	10.9	8.05	11.41	10.05	3.27	2.51	0.0	3.11	3.93	12.55	6.03	5.64
Merged-chr1-9549400-1	chr1	9549300	9549500	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	1452.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	4.04	6.79	9.13	10.46	2.86	11.29	3.32	2.24	16.13	13.56	8.54	1.88
Merged-chr9-58554583-1	chr9	58554483	58554683	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13643.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.04	2.77	6.85	2.41	7.77	7.53	1.0	7.4	3.15	4.02	4.52	4.07
Merged-chr6-146405570-1	chr6	146405470	146405670	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 10 of 56)	intron (NM_019923, intron 10 of 56)	96653.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	10.5	3.02	7.42	4.83	4.91	6.27	2.33	7.04	6.88	13.05	8.54	9.08
Merged-chr4-19853912-1	chr4	19853812	19854012	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35185.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	2.02	0.0	3.42	2.41	3.27	5.96	1.66	8.78	8.65	6.53	3.52	5.33
Merged-chr11-4988263-1	chr11	4988163	4988363	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	1439.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	7.27	5.79	3.99	3.62	6.14	3.76	2.99	5.05	9.44	8.03	5.53	3.13
Merged-chr7-67225087-2	chr7	67224974	67225174	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357962)	TTS (NM_001357962)	2458.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	6.86	5.28	16.54	4.83	6.14	8.78	7.97	7.32	8.65	6.53	11.05	2.82
Merged-chrX-166661032-2	chrX	166660949	166661149	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046015)	promoter-TSS (NR_046015)	-976.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	5.25	5.03	9.13	3.22	4.91	4.08	2.66	3.79	14.75	16.07	7.03	8.14
Merged-chr12-17267690-1	chr12	17267590	17267790	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027959, intron 1 of 12)	intron (NM_027959, intron 1 of 12)	1095.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	1.62	3.27	3.42	4.02	2.45	8.47	3.32	6.0	3.34	4.02	3.01	2.82
Merged-chr2-3425097-1	chr2	3424997	3425197	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	966.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	5.65	6.29	1.14	6.84	6.55	3.14	2.99	5.52	12.59	5.02	6.03	5.01
Merged-chr14-30616964-2	chr14	30616865	30617065	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-6655.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.85	4.78	3.42	1.61	7.77	5.33	14.62	8.44	11.21	6.53	12.56	4.07
Merged-chr12-16145809-1	chr12	16145709	16145909	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-329024.0	NM_144551	217410.0	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.0	0.5	0.0	0.0	0.82	7.21	2.33	6.9	1.38	0.5	0.5	0.94
Merged-chr1-54666160-1	chr1	54666060	54666260	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 18 of 27)	intron (NM_001081433, intron 18 of 27)	-108476.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	4.85	4.02	7.42	6.03	2.45	7.21	1.33	5.97	9.83	2.51	7.54	7.21
Merged-chr17-64945844-3	chr17	64945729	64945929	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109758.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	4.04	6.54	9.13	7.24	15.96	13.17	19.93	27.17	6.49	4.52	11.05	3.76
Merged-chr3-22111571-1	chr3	22111471	22111671	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	34919.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.65	3.02	3.99	3.22	2.45	8.78	1.99	4.6	2.75	8.03	8.54	2.19
Merged-chr2-129145139-2	chr2	129145044	129145244	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15444.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	4.04	9.81	9.7	4.42	9.82	5.96	10.96	5.61	4.33	7.03	4.02	5.64
Merged-chr6-73587150-1	chr6	73587050	73587250	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-116129.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	1.62	1.26	0.0	0.8	4.5	0.94	5.65	6.48	1.97	1.0	1.0	0.0
Merged-chr7-132805046-1	chr7	132804946	132805146	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	8150.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.02	4.28	3.99	2.82	3.68	4.39	6.31	5.8	2.95	5.52	2.51	0.94
Merged-chrX-37167277-2	chrX	37167177	37167377	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033785, intron 1 of 5)	intron (NM_001033785, intron 1 of 5)	1565.0	NM_001033785	434756.0	Mm.471848	NM_001033785	ENSMUSG00000036551	Akap14	-	A kinase (PRKA) anchor protein 14	protein-coding	6.46	5.53	6.85	1.21	2.45	10.03	1.33	6.28	8.46	13.05	14.57	5.01
Merged-chr4-134372527-3	chr4	134372366	134372566	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019578)	promoter-TSS (NM_019578)	81.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	8.88	8.05	5.7	7.64	7.77	3.45	8.64	4.65	2.16	3.01	4.02	6.27
Merged-chr5-20840037-1	chr5	20839937	20840137	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	42087.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	2.42	3.52	4.56	6.84	2.45	3.14	6.64	5.75	2.36	4.52	2.51	2.82
Merged-chr10-22300972-1	chr10	22300872	22301072	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	MTC-int|LTR|ERVL-MaLR	-5748.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.4	3.02	6.85	0.8	4.91	0.0	2.99	2.92	3.74	2.51	1.51	0.31
Merged-chr17-8905114-1	chr17	8905014	8905214	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55129.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	2.83	5.53	1.14	7.24	4.91	2.51	6.64	4.91	2.75	2.01	0.5	0.94
Merged-chr4-3729845-1	chr4	3729745	3729945	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	14881.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.42	8.55	7.42	7.24	11.86	9.41	9.63	5.19	7.47	9.04	4.52	3.45
Merged-chr1-106620317-2	chr1	106620218	106620418	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-73687.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	12.11	10.82	9.13	3.22	2.45	14.11	2.33	1.85	11.6	13.05	6.53	3.76
Merged-chr11-110584435-1	chr11	110584335	110584535	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	105095.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.44	1.26	5.7	8.45	4.5	5.02	5.98	13.88	0.0	0.0	0.0	0.0
Merged-chr10-120587397-1	chr10	120587297	120587497	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-110928.0	NM_010441	15364.0	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	5.25	6.04	1.14	5.63	7.77	7.84	2.66	5.58	5.11	2.01	6.53	4.7
Merged-chr8-85077197-3	chr8	85077095	85077295	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026399, intron 5 of 8)	intron (NM_026399, intron 5 of 8)	3551.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	9.69	7.8	7.42	4.83	9.0	7.21	7.64	7.99	13.77	15.06	14.07	9.71
Merged-chr13-33072256-1	chr13	33072156	33072356	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11847.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	9.29	5.79	3.42	4.02	4.5	6.27	3.65	4.82	4.92	5.52	5.53	6.58
Merged-chr6-3590563-1	chr6	3590463	3590663	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167751, intron 22 of 26)	ORR1C2|LTR|ERVL-MaLR	92170.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	2.83	2.01	1.14	2.41	0.0	4.08	5.31	8.61	7.08	2.51	6.03	3.13
Merged-chr14-25628676-1	chr14	25628576	25628776	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	25163.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.81	4.78	3.42	4.02	3.27	5.02	0.66	5.69	1.38	0.0	1.0	0.31
Merged-chr2-36009544-1	chr2	36009444	36009644	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29920.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	5.65	5.03	3.42	4.83	10.64	2.82	2.99	6.73	13.37	6.03	9.04	7.21
Merged-chr1-165689996-1	chr1	165689896	165690096	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	18098.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	1.01	4.56	4.02	4.91	6.9	6.98	5.47	6.29	5.52	4.02	0.0
Merged-chr11-79622805-1	chr11	79622705	79622905	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	358.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	5.65	4.02	6.85	7.64	11.86	6.9	5.31	7.18	6.1	8.03	10.55	8.77
Merged-chr5-64341184-2	chr5	64341094	64341294	+	715.974976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	MLT2B3|LTR|ERVL	110837.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.4	2.01	2.28	2.41	7.77	7.53	9.3	5.07	10.82	22.09	16.58	10.02
Merged-chr12-73594654-3	chr12	73594553	73594753	+	715.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	9857.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	10.5	5.03	14.26	9.25	9.82	13.8	17.61	13.85	9.83	11.05	11.56	4.7
Merged-chr13-58074995-3	chr13	58074910	58075110	+	715.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 5 of 16)	L1M2|LINE|L1	27418.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	11.31	8.8	4.56	9.25	11.05	21.95	11.29	14.24	14.55	5.52	9.55	1.57
Merged-chr12-3426123-2	chr12	3425994	3426194	+	715.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172421)	promoter-TSS (NM_172421)	653.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	7.27	6.54	1.14	5.23	8.59	9.09	7.31	5.05	5.51	8.03	14.57	8.14
Merged-chr8-111090310-2	chr8	111090228	111090428	+	715.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4417.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	3.23	4.78	5.7	0.8	8.18	6.59	4.32	4.71	13.57	6.03	7.54	8.77
Merged-chr2-129622107-3	chr2	129622009	129622209	+	715.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	26647.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.48	4.78	11.98	5.23	6.55	1.88	3.65	6.9	12.78	7.03	14.07	6.27
Merged-chr2-14187086-3	chr2	14186965	14187165	+	715.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081310, intron 1 of 3)	MLT1C-int|LTR|ERVL-MaLR	12541.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	3.63	7.55	11.98	11.66	14.32	8.47	6.98	12.11	10.62	5.02	7.54	6.27
Merged-chr19-6924687-3	chr19	6924599	6924799	+	715.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008431)	TTS (NM_008431)	681.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	10.5	7.55	16.54	20.51	15.96	11.6	18.27	11.78	10.42	4.02	10.55	13.47
Merged-chr6-136468552-2	chr6	136468451	136468651	+	715.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50300.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.83	2.26	1.14	0.0	18.0	5.02	4.65	8.55	10.62	4.02	9.04	5.64
Merged-chr8-122315685-2	chr8	122315593	122315793	+	715.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33552.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	6.46	6.04	4.56	7.24	9.41	7.21	8.64	13.96	8.26	3.01	11.56	5.33
Merged-chr5-105395363-3	chr5	105395254	105395454	+	715.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20421.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	7.67	4.28	12.55	6.84	7.36	9.41	8.97	7.01	14.95	11.55	4.52	7.52
Merged-chr2-173000967-3	chr2	173000858	173001058	+	715.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175112, intron 1 of 11)	intron (NM_175112, intron 1 of 11)	841.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	10.5	7.55	11.98	15.69	12.27	13.48	8.3	12.9	8.06	3.51	13.57	7.83
Merged-chr17-73416533-3	chr17	73416437	73416637	+	715.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17241.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	11.71	7.04	15.4	12.07	11.05	9.41	10.96	12.62	9.05	6.53	10.05	7.52
Merged-chr18-67308451-2	chr18	67308364	67308564	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	19241.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.04	4.02	5.13	7.24	8.18	13.8	4.32	7.23	11.41	9.54	11.56	4.39
Merged-chr18-7625275-2	chr18	7625178	7625378	+	715.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	1585.0	NM_001081287	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	9.69	4.53	7.99	11.26	0.82	1.25	0.66	0.87	9.24	7.53	22.11	7.83
Merged-chr16-22349975-2	chr16	22349874	22350074	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54986.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	4.04	6.29	0.0	2.82	6.95	9.41	6.64	9.03	10.23	5.02	15.07	9.08
Merged-chr6-54960025-2	chr6	54959895	54960095	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	11666.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	1.62	6.04	11.41	7.24	2.05	3.76	4.32	5.24	12.19	14.56	4.02	9.08
Merged-chr5-124467985-1	chr5	124467885	124468085	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030259, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	10250.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	4.44	2.77	3.99	0.0	7.36	11.92	5.65	5.61	8.46	8.03	3.52	3.45
Merged-chr15-74924969-3	chr15	74924823	74925023	+	715.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30128.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	7.67	3.02	5.7	6.84	3.68	5.02	8.97	3.48	12.98	6.03	17.08	12.22
Merged-chr3-35751031-3	chr3	35750949	35751149	+	715.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3014.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	2.42	10.06	5.7	8.85	12.68	8.15	5.98	13.21	11.21	7.03	3.52	13.16
Merged-chr6-5379262-2	chr6	5379169	5379369	+	715.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4117.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.63	3.02	1.71	2.82	5.32	3.14	4.32	6.93	16.13	11.55	11.05	9.08
Merged-chr2-166304750-1	chr2	166304650	166304850	+	715.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30842.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	1.21	1.26	8.56	2.41	10.64	7.84	2.33	6.5	5.31	8.54	7.54	7.52
Merged-chr11-115182470-3	chr11	115182384	115182584	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025400)	TTS (NM_025400)	4832.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	12.52	7.29	9.7	6.03	11.05	10.35	4.65	4.93	10.42	27.11	24.12	7.83
Merged-chr4-136884717-3	chr4	136884644	136884844	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	1433.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	8.08	9.81	4.56	7.64	5.32	4.39	14.95	8.64	9.44	5.52	7.03	5.64
Merged-chr3-127626264-1	chr3	127626164	127626364	+	715.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	4.44	4.02	10.27	4.83	6.55	9.41	4.65	5.97	2.56	3.01	1.51	2.19
Merged-chr6-134102606-3	chr6	134102494	134102694	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	66894.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.86	11.32	9.7	8.45	6.95	10.66	3.99	10.96	15.74	8.03	11.05	4.39
Merged-chr8-34806453-3	chr8	34806374	34806574	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1136.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	6.46	6.29	3.42	4.02	4.5	5.02	1.99	3.84	17.9	8.03	20.1	10.96
Merged-chr1-51667882-2	chr1	51667787	51667987	+	715.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71169.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	3.63	6.04	2.85	4.02	0.0	0.0	0.0	0.0	13.96	12.55	15.07	4.07
Merged-chr15-53822061-3	chr15	53821958	53822158	+	715.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	80378.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	4.85	8.05	7.42	11.26	7.36	16.62	6.64	16.88	11.41	9.04	14.57	10.02
Merged-chr16-92457846-3	chr16	92457743	92457943	+	715.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	8326.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	18.17	13.08	7.99	8.45	12.27	12.23	5.98	10.32	15.93	12.55	16.08	13.16
Merged-chr15-11964257-3	chr15	11964158	11964358	+	715.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2804.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	7.27	8.05	8.56	12.07	7.36	14.11	7.64	9.2	2.36	16.07	10.05	10.02
Merged-chr3-97961214-1	chr3	97961114	97961314	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	31041.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	4.44	6.79	3.42	0.8	2.05	5.02	6.98	6.67	8.46	3.01	7.03	2.19
Merged-chr16-20099371-2	chr16	20099260	20099460	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029436, intron 1 of 7)	intron (NM_029436, intron 1 of 7)	1806.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	8.08	7.8	7.99	5.63	8.59	2.2	6.31	7.63	6.88	8.03	5.02	1.57
Merged-chr14-101520215-1	chr14	101520115	101520315	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	88976.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.04	3.02	2.28	9.65	9.0	4.39	2.99	6.87	8.06	7.03	2.51	7.52
Merged-chr5-137338409-2	chr5	137338314	137338514	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1554.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	4.85	2.01	11.41	6.03	4.91	7.21	3.65	5.47	11.21	9.54	20.1	3.76
Merged-chr7-99675004-2	chr7	99674889	99675089	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	20820.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	11.31	5.03	10.84	15.69	7.36	6.9	6.64	20.94	1.77	3.51	4.02	5.64
Merged-chr10-39499291-1	chr10	39499191	39499391	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-113643.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	6.86	2.52	13.69	0.0	5.73	8.15	5.65	10.99	6.29	3.51	4.52	6.89
Merged-chr15-6426057-1	chr15	6425957	6426157	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19276.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	4.04	0.0	4.56	5.63	6.95	5.02	5.98	7.93	3.15	0.0	1.51	3.45
Merged-chr4-59879608-1	chr4	59879508	59879708	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 4 of 8)	intron (NM_172468, intron 4 of 8)	35448.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.25	5.79	17.11	8.45	8.18	3.45	6.31	14.47	4.92	5.02	6.53	3.45
Merged-chr9-68859051-2	chr9	68858951	68859151	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	93705.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	10.09	3.52	10.27	4.42	6.55	1.88	1.99	9.08	3.15	5.02	10.05	5.95
Merged-chr7-141048028-1	chr7	141047928	141048128	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13246.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	3.23	4.78	6.85	1.61	6.95	5.02	3.65	5.5	8.65	12.05	5.02	6.27
Merged-chr2-34108990-1	chr2	34108890	34109090	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	6.46	2.52	2.28	0.8	4.09	6.9	5.31	8.38	11.8	3.01	9.55	3.13
Merged-chr10-93262301-2	chr10	93262193	93262393	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	48866.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.25	4.53	1.14	1.61	5.73	5.02	1.99	3.93	12.59	3.51	13.06	9.71
Merged-chr16-37685394-1	chr16	37685294	37685494	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31026.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	6.46	6.04	1.14	7.64	4.09	5.64	5.98	7.04	5.7	6.03	5.53	7.21
Merged-chr1-171160828-1	chr1	171160728	171160928	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008623, exon 8 of 8)	3' UTR (NM_008623, exon 8 of 8)	5310.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	1.21	4.28	4.56	4.42	1.64	3.76	7.97	2.5	0.79	3.01	3.52	1.25
Merged-chr18-61065698-1	chr18	61065598	61065798	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008809, intron 6 of 22)	intron (NM_008809, intron 6 of 22)	20548.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	3.63	2.01	5.13	4.02	10.23	10.35	8.97	7.04	0.98	0.5	1.51	0.94
Merged-chr19-29487608-1	chr19	29487508	29487708	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34379.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.23	3.02	1.71	4.02	4.5	5.02	5.65	7.01	7.67	10.54	9.04	3.13
Merged-chr17-46453539-1	chr17	46453439	46453639	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162864, intron 13 of 14)	intron (NM_001162864, intron 13 of 14)	-15062.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	4.04	4.28	3.42	0.8	2.45	7.53	7.97	6.2	6.29	7.03	10.05	5.01
Merged-chr15-99585100-1	chr15	99585000	99585200	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009699)	TTS (NM_009699)	-5928.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	4.44	0.75	0.0	4.42	3.27	6.27	5.98	7.01	3.54	3.51	4.52	5.95
Merged-chr8-107095918-1	chr8	107095818	107096018	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106043)	TTS (NR_106043)	188.0	NR_106043	102465652.0		NR_106043	ENSMUSG00000098671	Mir7075	Gm27821|mmu-mir-7075	microRNA 7075	ncRNA	7.67	7.55	2.28	5.63	6.14	7.53	4.98	4.4	6.29	12.05	8.04	9.4
Merged-chr8-120276591-2	chr8	120276504	120276704	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48374.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	7.67	3.27	3.42	0.8	4.91	1.57	4.65	2.61	7.28	2.01	4.52	2.51
Merged-chr17-65950787-2	chr17	65950687	65950887	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023053, intron 1 of 4)	CpG	400.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	10.5	11.82	9.7	15.28	11.86	15.37	5.65	10.29	10.82	6.53	5.53	6.27
Merged-chr5-103819852-3	chr5	103819755	103819955	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65282.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	10.5	6.79	11.41	10.46	7.77	6.59	7.97	10.15	17.7	9.04	13.06	7.52
Merged-chr1-180736764-2	chr1	180736652	180736852	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133225, exon 4 of 8)	exon (NM_133225, exon 4 of 8)	10709.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.46	5.79	13.12	9.25	15.14	5.64	6.98	10.46	11.41	11.05	7.03	10.02
Merged-chr5-65873182-2	chr5	65873085	65873285	+	715.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	9616.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	1.62	8.05	11.41	10.46	5.73	2.2	11.29	12.03	9.05	3.01	7.54	8.14
Merged-chr10-80145582-3	chr10	80145448	80145648	+	715.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025313, exon 4 of 4)	3' UTR (NM_025313, exon 4 of 4)	-2724.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	8.48	5.53	13.69	3.62	11.86	4.39	4.65	6.14	8.65	8.03	6.03	8.77
Merged-chr16-31355113-2	chr16	31355008	31355208	+	715.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29818.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	9.29	11.07	13.69	4.83	9.0	12.86	4.98	5.72	10.42	3.51	4.02	4.07
Merged-chr11-60844855-2	chr11	60844762	60844962	+	715.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 2 of 6)	intron (NM_001172112, intron 2 of 6)	14231.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.81	0.0	0.0	0.0	9.0	6.9	0.33	6.62	13.57	8.03	11.05	5.64
Merged-chr4-59626662-1	chr4	59626562	59626762	+	715.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015681, intron 1 of 3)	CpG	451.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	4.04	7.29	3.42	5.63	9.41	6.59	10.63	5.86	10.62	7.53	12.06	9.08
Merged-chr6-82844014-3	chr6	82843950	82844150	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37803.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	7.67	7.8	7.99	2.82	5.73	6.59	5.98	8.61	12.19	6.03	11.05	4.7
Merged-chr9-65772348-3	chr9	65772248	65772448	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	B1F|SINE|Alu	55216.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	5.65	6.29	7.42	4.42	13.91	14.42	3.32	19.43	5.7	21.59	11.05	9.08
Merged-chr9-21030410-3	chr9	21030310	21030510	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023892, exon 3 of 3)	exon (NM_023892, exon 3 of 3)	1037.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	10.5	10.06	1.71	8.04	9.0	9.41	0.66	2.02	12.39	9.54	8.04	11.28
Merged-chr6-125482528-1	chr6	125482428	125482628	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12232.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.44	9.31	13.12	8.85	5.32	2.2	2.66	4.82	9.05	3.51	8.04	8.14
Merged-chr2-119662813-1	chr2	119662713	119662913	+	715.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356467)	promoter-TSS (NM_001356467)	21.0	NM_001356467	69702.0	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	8.08	4.78	5.13	4.42	7.36	7.84	9.97	6.53	4.13	5.02	1.0	7.21
Merged-chr8-11393736-1	chr8	11393636	11393836	+	715.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 4 of 47)	ID2|SINE|ID	-80910.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.81	2.26	9.13	12.07	9.82	5.96	4.65	7.63	1.38	5.02	1.0	1.88
Merged-chr18-36197401-3	chr18	36197266	36197466	+	715.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167891)	promoter-TSS (NM_001167891)	-206.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	14.54	12.32	11.41	9.65	7.36	8.15	2.66	11.66	8.06	5.52	16.08	10.02
Merged-chr11-74634706-3	chr11	74634602	74634802	+	715.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013784, intron 2 of 3)	intron (NM_001013784, intron 2 of 3)	-14793.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.85	8.05	9.13	7.24	18.82	16.31	7.64	5.13	11.01	9.54	9.04	4.39
Merged-chr14-50352611-2	chr14	50352516	50352716	+	715.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41|LTR|ERV1	-5298.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	3.63	7.04	18.83	3.62	3.27	4.7	3.65	9.98	16.33	8.03	16.58	7.52
Merged-chr18-61459529-2	chr18	61459411	61459611	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25096.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	4.44	7.8	3.99	6.44	5.32	9.09	5.31	8.33	9.05	6.03	11.05	7.52
Merged-chr9-67847326-2	chr9	67847258	67847458	+	715.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	6962.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	7.27	4.28	7.99	15.69	9.0	5.96	5.98	12.73	2.75	10.54	5.02	2.82
Merged-chr18-4438218-2	chr18	4438123	4438323	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62631.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	5.65	2.01	2.85	7.64	3.27	6.59	7.97	13.18	7.08	2.51	14.57	7.83
Merged-chr13-112510587-1	chr13	112510487	112510687	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46517.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.85	3.02	2.85	5.63	6.55	6.9	9.97	6.62	5.7	6.03	10.55	5.95
Merged-chr2-73454898-2	chr2	73454794	73454994	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	(CGGGG)n|Simple_repeat|Simple_repeat	-1005.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	1.21	3.27	2.28	0.8	0.41	5.02	3.65	3.53	10.42	6.03	14.57	3.76
Merged-chr15-30646919-3	chr15	30646790	30646990	+	715.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008729, exon 7 of 23)	exon (NM_008729, exon 7 of 23)	-392236.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.23	7.55	3.99	2.82	13.5	9.72	12.29	12.67	14.75	9.04	9.04	6.58
Merged-chr7-121073760-3	chr7	121073656	121073856	+	715.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	774.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	8.88	10.56	6.85	1.21	4.91	6.59	8.97	8.64	7.87	7.03	10.55	6.27
Merged-chr16-33895905-3	chr16	33895756	33895956	+	715.222229	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	66191.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	2.02	2.52	1.71	2.41	4.09	2.51	4.65	3.5	6.29	5.52	4.02	10.02
Merged-chr7-80179997-3	chr7	80179895	80180095	+	715.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6846.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.46	4.53	11.41	11.26	8.18	6.27	1.0	9.53	17.11	14.56	21.1	13.16
Merged-chr12-40221131-2	chr12	40221041	40221241	+	715.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	1670.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	5.25	4.53	5.13	5.23	7.77	10.98	4.65	11.1	5.31	10.04	13.57	6.89
Merged-chr8-33778755-2	chr8	33778642	33778842	+	715.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30972.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	8.08	2.01	1.71	4.83	3.27	9.41	7.97	4.54	11.8	4.02	20.1	3.45
Merged-chr7-133186500-2	chr7	133186397	133186597	+	715.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	58246.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	13.33	3.52	12.55	7.64	10.64	8.78	9.63	4.91	3.54	7.03	8.04	4.39
Merged-chr10-54118607-2	chr10	54118517	54118717	+	715.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42695.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	2.02	5.53	14.26	3.22	9.0	6.9	3.32	8.1	9.24	10.54	9.04	6.27
Merged-chr16-23245347-2	chr16	23245244	23245444	+	715.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	19323.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	2.42	1.51	7.42	7.24	5.73	10.66	6.98	15.64	6.1	5.02	17.08	6.27
Merged-chr5-142815450-3	chr5	142815272	142815472	+	715.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122730, exon 2 of 28)	5' UTR (NM_001122730, exon 2 of 28)	2015.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	10.5	6.54	2.85	4.42	8.59	3.76	6.31	4.4	12.98	9.04	10.05	5.64
Merged-chr1-151948234-1	chr1	151948134	151948334	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	142086.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.04	5.53	8.56	4.83	6.95	4.39	6.64	7.49	4.13	8.54	9.55	2.51
Merged-chr16-64801839-1	chr16	64801739	64801939	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347245, intron 3 of 8)	ORR1A2|LTR|ERVL-MaLR	-15518.0	NM_028059	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.81	0.25	9.7	5.23	3.27	4.39	5.65	10.74	8.06	1.0	8.54	3.45
Merged-chr4-126829116-2	chr4	126829013	126829213	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035525, intron 7 of 23)	intron (NM_001035525, intron 7 of 23)	75343.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	4.04	11.07	12.55	3.22	8.59	15.05	2.66	1.35	11.21	17.57	8.54	2.19
Merged-chr16-49818136-1	chr16	49818036	49818236	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-37518.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.81	1.51	5.13	4.83	5.32	2.82	2.99	7.07	7.08	2.51	2.51	1.88
Merged-chr1-54492560-1	chr1	54492460	54492660	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163314, intron 22 of 26)	intron (NM_001163314, intron 22 of 26)	-53534.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	3.52	14.83	0.8	4.5	3.45	4.98	5.89	3.93	5.52	6.03	5.64
Merged-chr7-34266238-2	chr7	34266129	34266329	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	19380.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	4.85	4.28	6.85	8.04	4.91	6.27	5.31	6.11	10.23	10.54	24.62	9.4
Merged-chr1-170703168-1	chr1	170703068	170703268	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58636.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.85	2.52	5.7	3.22	10.64	4.39	7.64	6.22	3.93	4.52	6.03	5.33
Merged-chr1-184561584-1	chr1	184561484	184561684	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3893.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.44	2.77	5.7	6.84	4.91	8.15	2.99	4.91	4.13	3.51	8.04	4.07
Merged-chr2-142819213-1	chr2	142819113	142819313	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	Lx2|LINE|L1	82251.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.04	9.06	7.99	6.03	0.0	0.0	0.66	0.73	0.59	0.0	1.51	1.88
Merged-chr15-36499995-3	chr15	36499891	36500091	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3200.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	2.83	7.29	16.54	10.46	20.05	14.42	7.31	8.13	10.62	17.57	8.04	9.71
Merged-chr13-22040505-1	chr13	22040405	22040605	+	715.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175656)	TTS (NM_175656)	857.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	2.42	6.29	4.56	2.01	4.09	3.45	6.64	2.38	8.85	11.05	13.57	2.51
Merged-chr11-44586235-1	chr11	44586135	44586335	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_126460)	promoter-TSS (NR_126460)	-82.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	5.65	2.77	4.56	5.23	6.95	4.39	9.3	7.12	9.24	3.51	6.03	8.46
Merged-chr4-72438757-1	chr4	72438657	72438857	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	237513.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	2.83	0.25	3.99	2.41	9.82	0.0	2.66	5.1	5.9	3.01	4.52	2.82
Merged-chr11-21092888-1	chr11	21092788	21092988	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	1564.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	2.02	5.53	0.57	5.23	3.68	5.33	3.32	4.65	5.7	8.03	4.52	0.63
Merged-chr8-39643751-1	chr8	39643651	39643851	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-1073.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.42	2.77	1.14	3.22	4.91	6.9	4.65	5.66	8.85	3.01	7.54	5.33
Merged-chr18-84085859-2	chr18	84085759	84085959	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081300, exon 1 of 2)	5' UTR (NM_001081300, exon 1 of 2)	703.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.85	6.54	7.99	9.65	8.59	9.09	10.3	12.62	8.06	5.02	11.05	5.33
Merged-chr5-142902354-1	chr5	142902254	142902454	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007393)	TTS (NM_007393)	4400.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	13.33	5.28	5.13	5.63	2.45	1.25	1.66	2.75	7.08	4.02	3.01	5.64
Merged-chr15-78331698-1	chr15	78331598	78331798	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	5708.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	7.27	4.53	2.28	4.83	11.45	7.84	9.3	7.4	4.72	7.53	6.53	6.27
Merged-chr1-183297699-1	chr1	183297599	183297799	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-406.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	18.17	12.07	13.69	3.62	15.14	12.54	14.95	5.38	14.36	10.04	11.56	15.98
Merged-chr12-44919077-3	chr12	44918975	44919175	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	MLT2B2|LTR|ERVL	155408.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	10.09	7.55	5.7	10.46	8.18	5.33	5.31	13.77	11.8	9.54	28.14	8.77
Merged-chr6-49321476-1	chr6	49321376	49321576	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	2202.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	0.81	1.51	7.42	4.02	2.05	0.63	4.65	4.15	2.16	1.51	0.5	5.33
Merged-chr1-39522733-1	chr1	39522633	39522833	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12968.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	6.46	5.53	6.85	2.82	2.05	8.15	1.99	5.24	10.82	11.05	6.03	3.76
Merged-chr12-103434828-1	chr12	103434728	103434928	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194069, intron 1 of 3)	RMER10B|LTR|ERVL	639.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	2.02	4.78	6.28	5.63	3.68	0.0	4.65	5.94	7.47	4.52	6.03	1.88
Merged-chr19-15925837-1	chr19	15925737	15925937	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177420)	promoter-TSS (NM_177420)	-778.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	1.62	1.51	7.99	5.63	1.23	6.59	3.99	10.21	2.16	3.01	3.01	1.57
Merged-chr8-33797528-1	chr8	33797428	33797628	+	715.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286168, intron 5 of 7)	intron (NM_001286168, intron 5 of 7)	-49758.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	6.46	2.77	2.28	2.41	2.05	2.2	1.66	3.98	6.88	13.56	9.55	9.4
Merged-chr14-61686912-1	chr14	61686812	61687012	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-4539.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.86	7.8	1.71	1.61	2.45	3.45	5.31	2.75	4.52	2.51	5.02	5.33
Merged-chr11-58021298-1	chr11	58021198	58021398	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	12234.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	8.48	10.06	1.14	2.82	2.45	8.47	0.33	0.34	12.0	10.54	6.53	0.63
Merged-chrX-155543984-1	chrX	155543884	155544084	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	79343.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	1.62	1.01	5.7	2.41	2.86	5.02	4.65	6.5	0.59	0.0	7.54	1.25
Merged-chr5-65703396-1	chr5	65703296	65703496	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-5540.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.25	6.29	7.42	2.41	2.45	9.72	2.99	5.89	5.9	6.53	9.55	10.65
Merged-chr4-139576434-1	chr4	139576334	139576534	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	1714.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.81	2.52	7.99	0.8	3.68	0.31	1.66	0.39	2.36	4.02	1.0	3.45
Merged-chr9-110999468-1	chr9	110999368	110999568	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-9755.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	1.21	3.02	11.41	4.42	3.27	5.96	3.32	7.99	5.9	4.52	4.52	1.88
Merged-chr4-133688476-1	chr4	133688376	133688576	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080819, intron 12 of 19)	intron (NM_001080819, intron 12 of 19)	-15310.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.67	5.28	2.28	0.8	4.09	7.84	0.66	4.77	3.93	2.01	2.01	1.57
Merged-chr6-116818919-1	chr6	116818819	116819019	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102161.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	2.42	3.52	2.85	7.24	5.73	7.21	2.99	7.26	6.88	4.52	8.04	10.02
Merged-chr8-33386197-2	chr8	33386095	33386295	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-130.0	NM_152821	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	5.65	6.04	2.85	3.22	5.73	2.51	9.97	6.7	11.21	7.03	10.55	8.46
Merged-chr3-9000501-2	chr3	9000404	9000604	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	RMER6A|LTR|ERVK	3700.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.04	5.03	1.71	11.26	6.95	8.47	4.32	8.55	11.41	4.52	10.05	10.96
Merged-chr8-111537302-1	chr8	111537202	111537402	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001168621, exon 1 of 5)	exon (NM_001168621, exon 1 of 5)	662.0	NM_001168621	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	1.21	7.04	1.14	3.22	4.91	2.2	4.65	5.1	7.47	8.54	6.53	5.64
Merged-chr15-28416815-1	chr15	28416715	28416915	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	213049.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	2.02	2.26	0.0	1.61	0.0	1.57	0.33	2.58	1.18	4.52	4.02	0.0
Merged-chr8-35378966-1	chr8	35378866	35379066	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3225.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.85	2.52	3.42	2.82	3.68	6.27	4.98	8.3	5.7	6.03	6.03	4.39
Merged-chr10-93431089-1	chr10	93430989	93431189	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2018.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	5.25	4.02	2.28	4.02	7.77	8.78	3.65	6.93	2.75	11.05	6.53	1.88
Merged-chr19-55751689-1	chr19	55751589	55751789	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	9879.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.06	7.29	7.99	7.24	4.09	6.27	4.65	7.63	9.05	5.02	4.02	3.76
Merged-chr1-181345708-2	chr1	181345615	181345815	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6913.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	6.46	5.28	6.28	10.05	7.77	2.51	11.63	12.48	4.13	5.52	9.04	7.83
Merged-chr12-84011639-1	chr12	84011539	84011739	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	2137.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.85	3.52	4.56	1.21	8.18	4.7	1.99	7.21	4.13	1.0	1.0	1.57
Merged-chr3-116251764-3	chr3	116251675	116251875	+	714.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022427, exon 2 of 2)	exon (NM_022427, exon 2 of 2)	1709.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	8.08	10.31	6.28	13.27	9.82	11.29	7.97	15.08	9.64	6.53	7.03	13.47
Merged-chr7-80109563-2	chr7	80109469	80109669	+	714.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	5781.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	14.54	17.61	9.13	3.22	4.91	10.35	10.96	14.72	2.16	1.0	1.51	3.76
Merged-chr8-79398119-3	chr8	79398010	79398210	+	714.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	1358.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.65	8.3	12.55	12.07	13.09	6.59	7.97	13.12	9.44	10.54	9.55	7.83
Merged-chr10-41678929-3	chr10	41678803	41679003	+	714.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 7 of 47)	intron (NM_001358562, intron 7 of 47)	37560.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	11.31	5.03	2.28	8.45	9.41	7.21	7.97	7.85	12.59	5.02	10.55	2.51
Merged-chr2-117780533-3	chr2	117780428	117780628	+	714.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32274.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	5.65	9.31	13.69	11.26	9.41	4.39	2.33	6.36	14.16	8.54	7.03	16.29
Merged-chr7-105626890-3	chr7	105626787	105626987	+	714.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	6684.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	8.48	10.06	9.13	4.02	8.18	15.05	5.31	5.83	11.8	8.03	15.07	9.08
Merged-chr7-123431406-2	chr7	123431313	123431513	+	714.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23596.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	2.02	6.29	2.28	6.03	5.32	5.96	6.31	8.36	10.82	4.02	8.54	7.83
Merged-chr8-25225090-3	chr8	25225106	25225306	+	714.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23664.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	1.21	2.77	4.56	4.83	7.77	2.2	2.99	2.86	5.9	6.03	7.03	5.95
Merged-chr12-52504675-6	chr12	52504651	52504851	+	714.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11326.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.44	11.07	9.13	7.64	3.68	4.08	7.64	7.54	11.21	8.54	10.55	6.89
Merged-chr13-51850555-4	chr13	51850411	51850611	+	714.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3836.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.65	14.59	3.42	2.41	9.41	12.23	3.32	6.22	4.72	6.53	2.01	4.39
Merged-chr16-93026422-2	chr16	93026317	93026517	+	714.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-200343.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.27	8.3	5.13	9.65	12.68	11.6	6.98	12.17	15.74	9.04	7.54	4.7
Merged-chr19-11497419-3	chr19	11497324	11497524	+	714.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	5386.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	11.31	8.3	4.56	9.65	15.55	13.48	4.98	4.68	12.19	7.03	7.54	16.92
Merged-chr4-152448014-1	chr4	152447914	152448114	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010598, intron 1 of 15)	intron (NM_010598, intron 1 of 15)	841.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	1.62	1.76	1.71	6.03	6.55	7.53	5.98	5.78	2.36	6.03	3.01	3.76
Merged-chr2-119799510-2	chr2	119799412	119799612	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019392)	promoter-TSS (NM_019392)	-2.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	5.25	4.78	7.42	4.02	5.73	5.64	9.3	5.52	8.46	7.03	6.53	5.95
Merged-chr3-85574676-2	chr3	85574548	85574748	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144896, intron 1 of 12)	intron (NM_144896, intron 1 of 12)	519.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.63	4.53	4.56	6.84	5.32	9.41	7.64	4.6	10.23	14.06	9.04	13.47
Merged-chr3-106782156-2	chr3	106782061	106782261	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	Lx6|LINE|L1	7988.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	6.86	6.54	9.13	7.24	9.82	5.02	4.65	8.69	13.18	7.03	9.04	5.64
Merged-chr7-44312085-2	chr7	44311975	44312175	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	1811.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	6.06	5.79	7.99	2.41	1.23	8.47	7.31	2.8	12.98	8.54	10.05	9.71
Merged-chr17-43030366-1	chr17	43030266	43030466	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	13811.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.63	6.29	5.7	4.83	10.23	4.39	7.97	6.76	2.56	2.51	2.51	1.88
Merged-chr11-118423444-2	chr11	118423326	118423526	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4308.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	6.46	6.54	11.98	3.22	9.41	11.92	0.33	6.22	11.21	11.55	13.57	5.95
Merged-chr10-81190299-3	chr10	81190203	81190403	+	714.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190473, intron 3 of 8)	CpG	-4388.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	3.63	9.81	10.27	11.26	13.5	11.92	1.99	6.48	10.82	16.07	14.57	21.62
Merged-chr19-7495513-3	chr19	7495412	7495612	+	714.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	1074.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	16.15	5.03	8.56	9.65	13.91	15.05	5.31	5.41	13.77	14.56	18.09	5.33
Merged-chr2-102819706-1	chr2	102819606	102819806	+	714.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-72946.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.81	2.01	3.42	0.0	1.23	2.2	4.32	1.32	2.56	5.02	7.54	2.19
Merged-chr7-45023898-1	chr7	45023798	45023998	+	714.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	4301.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.25	0.0	0.0	0.0	0.31	0.0	0.03	12.39	11.55	11.05	4.39
Merged-chr13-58113405-3	chr13	58113297	58113497	+	714.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001362415, exon 1 of 15)	5' UTR (NM_001362415, exon 1 of 15)	250.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	8.48	4.02	9.13	12.47	8.59	4.08	5.65	7.57	8.46	5.52	13.57	5.01
Merged-chr9-96322824-1	chr9	96322724	96322924	+	714.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	40891.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.25	3.77	6.28	2.41	2.45	1.88	8.3	2.72	10.42	2.51	12.56	10.34
Merged-chr19-6331859-3	chr19	6331758	6331958	+	714.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3121.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	11.71	7.8	2.85	4.83	7.36	8.47	5.98	5.36	11.21	6.03	8.04	8.46
Merged-chr18-36558153-2	chr18	36558053	36558253	+	714.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2450.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	9.69	4.53	13.69	4.83	8.18	12.54	0.66	7.43	11.21	5.52	6.03	7.21
Merged-chr10-30723168-2	chr10	30723062	30723262	+	714.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	ID4|SINE|ID	-67295.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.04	5.28	7.42	4.83	11.45	5.64	5.98	7.35	5.31	8.54	11.05	7.83
Merged-chr7-4556952-3	chr7	4556853	4557053	+	714.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207270, intron 12 of 19)	intron (NM_207270, intron 12 of 19)	-9412.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	8.88	5.79	10.84	14.08	8.59	5.96	9.63	6.2	21.83	14.06	13.06	5.33
Merged-chr11-43363166-3	chr11	43363077	43363277	+	714.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	11284.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	11.71	8.3	10.27	4.42	6.95	5.96	7.97	5.86	10.62	10.04	7.54	8.46
Merged-chr17-86232402-2	chr17	86232291	86232491	+	714.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	MIR|SINE|MIR	54787.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.02	6.29	15.97	8.85	6.95	3.45	11.96	13.77	9.83	1.0	6.53	4.7
Merged-chr13-117289866-2	chr13	117289764	117289964	+	714.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69291.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	4.44	1.76	1.14	6.84	7.36	4.39	3.99	5.55	12.78	13.56	8.04	5.33
Merged-chr2-59316710-2	chr2	59316608	59316808	+	714.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 9 of 20)	intron (NM_175464, intron 9 of 20)	69974.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	2.42	2.26	10.84	10.46	8.18	9.09	10.3	15.14	7.67	9.04	6.03	10.02
Merged-chr12-111743523-2	chr12	111743421	111743621	+	714.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	L1MB3|LINE|L1	-15328.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	11.31	3.52	3.99	3.22	9.82	9.72	6.64	8.07	10.62	3.51	10.55	8.14
Merged-chr11-4710283-3	chr11	4710137	4710337	+	714.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026015, intron 1 of 5)	B1_Mur3|SINE|Alu	5581.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	6.46	6.54	3.42	4.83	6.14	4.39	1.66	3.45	8.06	16.57	20.1	10.34
Merged-chr15-60779845-3	chr15	60779748	60779948	+	714.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43117.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	6.86	7.04	7.42	6.03	27.82	15.37	10.3	27.9	6.88	8.54	8.54	8.46
Merged-chr14-50363768-1	chr14	50363668	50363868	+	714.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_205819)	TTS (NM_205819)	5854.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	3.63	5.79	1.14	8.45	3.27	3.14	6.98	5.02	16.52	14.56	12.56	7.21
Merged-chr1-87184970-3	chr1	87184890	87185090	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027084, intron 4 of 12)	intron (NM_027084, intron 4 of 12)	1676.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	14.13	9.56	5.7	6.03	7.36	9.72	8.3	9.87	9.83	12.05	17.59	5.64
Merged-chr2-146834948-2	chr2	146834852	146835052	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20937.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	10.9	5.28	4.56	8.45	12.68	8.47	4.65	7.77	3.93	8.54	2.51	7.52
Merged-chr14-87464389-1	chr14	87464289	87464489	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	47806.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	6.46	6.29	5.13	3.22	5.73	6.9	2.33	5.8	4.52	6.03	9.55	2.51
Merged-chr6-24666518-1	chr6	24666418	24666618	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1523.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	1.62	5.53	6.28	1.61	6.95	5.64	3.65	8.16	2.75	5.02	2.51	4.39
Merged-chr4-148625895-2	chr4	148625788	148625988	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003898, intron 1 of 6)	intron (NM_001003898, intron 1 of 6)	1108.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	8.48	5.28	5.13	0.8	6.95	5.64	8.64	6.03	12.39	3.01	8.54	4.7
Merged-chr7-117481629-2	chr7	117481525	117481725	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100646.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.63	4.78	12.55	0.8	9.82	6.27	8.3	12.9	3.93	2.51	7.03	4.39
Merged-chr13-59004718-2	chr13	59004612	59004812	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197015.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	6.46	3.27	9.13	6.84	7.36	6.59	3.65	8.78	13.37	10.54	9.04	2.51
Merged-chr6-99206217-2	chr6	99206023	99206223	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60392.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.63	0.0	4.56	7.64	2.86	2.2	1.99	2.1	4.33	3.01	1.0	1.88
Merged-chrX-10903071-1	chrX	10902971	10903171	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	185706.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	3.23	1.26	3.42	4.02	6.55	3.45	5.65	9.56	9.05	1.0	13.06	3.13
Merged-chr8-34124091-2	chr8	34123995	34124195	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001126314, exon 3 of 3)	exon (NM_001126314, exon 3 of 3)	9065.0	NM_001126314	234155.0	Mm.324008	NM_001126314	ENSMUSG00000071113	Mboat4	GOAT|Gm171	membrane bound O-acyltransferase domain containing 4	protein-coding	4.04	2.01	1.14	3.62	6.95	7.84	3.32	6.98	15.74	4.52	12.56	9.4
Merged-chr2-21146772-2	chr2	21146676	21146876	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58589.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.23	5.28	1.14	6.44	15.96	1.25	3.99	8.66	6.49	6.53	17.59	4.39
Merged-chr17-29459769-1	chr17	29459669	29459869	+	714.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31276.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	1.21	5.79	1.14	0.4	5.32	0.94	1.99	1.26	13.77	7.53	10.05	8.14
Merged-chr1-57378202-2	chr1	57378106	57378306	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	586.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	6.46	3.52	12.55	11.26	9.41	7.53	5.98	9.0	10.42	6.03	15.07	11.59
Merged-chrX-48515332-2	chrX	48515216	48515416	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1753.0	NM_012019	26926.0	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	6.86	3.27	1.14	4.02	4.91	12.54	7.64	7.32	9.24	1.0	3.01	4.07
Merged-chr7-100700027-2	chr7	100699919	100700119	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6616.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	6.06	5.28	5.7	0.8	9.0	5.96	1.33	7.99	6.88	4.52	11.05	15.98
Merged-chr8-72136845-3	chr8	72136748	72136948	+	714.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1556.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	14.54	4.53	8.56	6.84	11.05	20.07	6.64	7.54	11.41	14.56	15.07	7.21
Merged-chr8-61575333-3	chr8	61575247	61575447	+	714.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15822.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.48	7.8	9.13	3.22	5.32	9.72	8.97	9.79	8.06	8.54	15.58	6.58
Merged-chr2-180580506-1	chr2	180580406	180580606	+	714.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028479)	promoter-TSS (NM_028479)	-716.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	5.65	8.05	2.28	5.63	8.18	9.72	8.64	7.15	3.34	3.51	3.01	1.57
Merged-chr11-101759757-2	chr11	101759662	101759862	+	714.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25548.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	12.11	7.8	9.13	3.22	9.82	12.54	9.97	9.84	4.33	6.03	9.55	5.33
Merged-chr9-106295464-2	chr9	106295361	106295561	+	714.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	14400.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.4	7.29	3.42	4.02	14.73	8.15	5.65	2.83	7.67	11.05	16.08	12.84
Merged-chr16-85143721-1	chr16	85143621	85143821	+	714.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	29986.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	1.62	0.5	1.14	0.8	9.41	8.78	10.3	7.57	2.95	2.51	3.52	7.52
Merged-chr4-33497169-3	chr4	33497066	33497266	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	59085.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	10.09	4.53	9.13	12.87	3.68	12.23	9.97	11.16	10.62	9.54	15.58	5.33
Merged-chr2-167693760-3	chr2	167693659	167693859	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	MIRc|SINE|MIR	2582.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.88	3.27	6.85	12.07	10.64	7.21	8.97	9.53	7.87	4.02	9.55	10.34
Merged-chr10-89436106-1	chr10	89436006	89436206	+	714.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079876, intron 2 of 10)	intron (NM_001079876, intron 2 of 10)	7861.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	2.42	1.26	0.0	2.41	6.55	6.27	5.98	10.77	3.54	1.0	6.03	2.82
Merged-chr3-153975896-3	chr3	153975779	153975979	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081263, intron 1 of 21)	intron (NM_001081263, intron 1 of 21)	2443.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	1.62	6.54	9.7	5.23	11.86	5.64	9.63	14.27	7.67	8.03	4.52	5.64
Merged-chr11-76771424-3	chr11	76771323	76771523	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7845.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	1.62	12.83	10.27	4.02	4.09	9.72	17.61	15.2	10.23	11.55	2.51	10.02
Merged-chr3-65372858-3	chr3	65372747	65372947	+	714.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 13 of 13)	intron (NM_001357358, intron 13 of 13)	19706.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	5.65	6.04	14.26	7.64	8.18	6.59	5.98	10.88	19.67	3.51	14.07	6.89
Merged-chr15-59665601-3	chr15	59665503	59665703	+	714.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16949.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.25	5.53	9.13	16.89	9.0	10.35	15.28	21.67	6.1	2.01	14.57	7.21
Merged-chr2-116978009-3	chr2	116977903	116978103	+	714.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77851.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.08	6.29	4.56	3.22	6.55	10.35	11.29	6.36	11.21	21.09	14.57	4.39
Merged-chr5-113956701-2	chr5	113956592	113956792	+	714.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 9 of 14)	B3|SINE|B2	37065.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	6.46	4.28	3.42	4.83	15.55	6.9	1.33	11.47	15.14	17.57	8.04	7.52
Merged-chr15-82417711-3	chr15	82417633	82417833	+	714.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10539.0	NM_010005	13101.0	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	11.31	3.52	10.84	7.64	7.36	7.21	2.33	7.54	13.37	6.03	12.56	9.4
Merged-chr9-119323727-3	chr9	119323595	119323795	+	714.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1268.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	8.48	6.79	3.99	3.62	8.18	7.21	2.66	2.83	10.82	13.56	14.07	8.14
Merged-chr2-72376138-3	chr2	72376029	72376229	+	714.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	90428.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.25	1.51	9.7	7.64	5.73	5.96	3.65	6.84	8.46	5.52	7.03	6.89
Merged-chr2-38469381-3	chr2	38469292	38469492	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42305.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.67	6.54	7.42	13.27	16.36	6.59	5.65	9.62	18.1	9.54	6.53	6.89
Merged-chr10-80806102-2	chr10	80806048	80806248	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007445, exon 2 of 5)	exon (NM_007445, exon 2 of 5)	900.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	9.69	7.29	11.41	6.84	6.95	17.25	5.98	3.98	9.64	6.03	9.55	7.52
Merged-chr5-16506857-3	chr5	16506766	16506966	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46629.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.63	0.5	11.98	7.64	26.59	10.98	16.28	34.18	8.46	16.07	24.12	7.83
Merged-chr11-51617914-3	chr11	51617814	51618014	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1859.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	7.67	9.06	4.56	7.24	13.5	7.21	3.65	5.64	12.98	12.55	12.56	8.46
Merged-chr1-164007650-2	chr1	164007552	164007752	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	12763.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	8.48	3.52	6.28	12.47	9.0	8.15	5.98	8.47	14.95	7.03	10.05	6.27
Merged-chr2-32981588-2	chr2	32981502	32981702	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151460, intron 2 of 8)	CpG-8008	481.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	12.52	11.32	9.13	1.61	8.18	5.96	7.31	1.88	9.83	9.04	5.53	9.08
Merged-chrX-159676295-2	chrX	159676177	159676377	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	-32324.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	6.06	7.8	8.56	5.23	11.05	8.47	8.97	9.73	8.46	4.52	20.1	5.01
Merged-chr8-45358607-2	chr8	45358518	45358718	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153535, intron 1 of 13)	CpG	23673.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	3.23	10.06	6.28	9.65	5.32	7.53	11.96	6.95	7.47	6.03	3.01	4.07
Merged-chr11-17280138-3	chr11	17280079	17280279	+	714.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	22491.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	10.5	7.55	5.7	8.04	2.05	4.08	16.61	6.39	7.28	6.53	8.04	9.4
Merged-chr11-11694316-3	chr11	11694223	11694423	+	714.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	4146.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.63	4.53	3.99	14.88	5.32	10.98	7.31	12.98	9.83	2.51	12.56	7.21
Merged-chr10-44527314-3	chr10	44527230	44527430	+	714.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68582.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	19.38	5.53	9.13	8.85	11.86	9.41	7.31	6.48	6.1	11.55	20.1	8.77
Merged-chr2-151994495-2	chr2	151994397	151994597	+	714.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-2014.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	11.71	1.01	7.99	6.03	6.95	5.96	7.31	13.49	5.11	9.54	12.06	7.21
Merged-chr19-5592057-3	chr19	5591955	5592155	+	714.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9818.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	8.48	12.58	1.71	10.86	12.27	10.66	7.31	11.64	11.6	11.05	12.56	5.95
Merged-chr19-12783001-3	chr19	12782911	12783111	+	714.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053009, intron 2 of 10)	Lx6|LINE|L1	13112.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	10.5	2.01	11.41	7.64	14.73	9.09	6.98	8.8	4.72	6.53	17.59	9.71
Merged-chr6-129058195-2	chr6	129058087	129058287	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153094)	TTS (NM_153094)	12286.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	7.67	5.03	3.99	6.44	7.77	10.66	7.97	8.41	10.23	6.03	23.62	7.21
Merged-chr12-51705759-2	chr12	51705645	51705845	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-13831.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	7.27	4.02	3.42	6.03	1.23	7.53	6.64	6.22	9.83	4.52	8.54	6.58
Merged-chr13-114984847-1	chr13	114984747	114984947	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033228, intron 18 of 28)	intron (NM_001033228, intron 18 of 28)	-52747.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	4.04	2.26	0.0	4.83	4.09	7.84	1.0	3.93	2.95	2.51	7.54	2.51
Merged-chr15-9094175-1	chr15	9094075	9094275	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040395, intron 6 of 12)	MLT1F1|LTR|ERVL-MaLR	22915.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	2.52	0.0	0.8	4.5	2.82	4.32	8.1	3.15	2.51	6.53	6.58
Merged-chr3-79532872-3	chr3	79532779	79532979	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	34800.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	6.06	7.55	10.84	6.03	5.32	2.2	4.65	4.37	29.9	23.1	28.14	23.18
Merged-chr18-80651566-1	chr18	80651466	80651666	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 7 of 9)	intron (NM_198429, intron 7 of 9)	56607.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.85	3.27	7.99	1.21	5.73	6.59	3.65	7.71	7.47	3.01	5.02	5.33
Merged-chr18-38427230-2	chr18	38427145	38427345	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	8338.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.44	3.02	2.85	8.85	11.45	4.08	4.65	6.64	7.87	2.51	5.53	11.9
Merged-chr8-70005360-1	chr8	70005260	70005460	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8976.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.63	3.27	1.71	1.61	12.68	4.39	1.99	5.86	3.34	3.51	6.53	5.64
Merged-chr6-5255751-1	chr6	5255651	5255851	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	482.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	4.04	4.28	6.28	3.22	3.68	4.39	4.65	5.75	4.92	3.51	6.53	5.64
Merged-chr12-76473868-1	chr12	76473768	76473968	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29371.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	4.85	4.02	11.98	0.0	6.14	6.9	5.65	5.13	3.34	10.54	3.52	3.45
Merged-chr8-39656589-1	chr8	39656489	39656689	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13911.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.85	1.76	5.13	4.42	2.45	2.2	6.31	8.41	0.0	0.0	0.0	0.0
Merged-chr4-129808552-1	chr4	129808452	129808652	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11927.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.62	1.01	0.0	1.61	1.64	2.51	0.0	0.9	11.01	8.03	5.53	5.01
Merged-chr2-167357081-2	chr2	167356968	167357168	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7890.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.27	4.53	10.27	3.62	7.36	8.78	3.32	6.25	13.18	9.04	10.05	4.39
Merged-chr3-15126914-1	chr3	15126814	15127014	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155713.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	1.26	0.0	9.25	8.18	1.25	4.98	12.2	0.98	0.5	5.02	0.31
Merged-chr16-76130175-1	chr16	76130075	76130275	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040575, intron 1 of 2)	intron (NR_040575, intron 1 of 2)	7562.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	4.04	4.53	3.42	6.03	6.55	4.08	4.65	6.25	3.34	4.52	12.06	5.64
Merged-chr16-78303211-1	chr16	78303111	78303311	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	1540.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	4.44	0.5	0.57	0.4	9.0	4.39	5.65	5.78	8.26	4.52	1.0	3.13
Merged-chr3-82029380-1	chr3	82029280	82029480	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32458.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	3.63	4.78	6.28	4.02	2.86	3.14	10.3	8.27	10.03	6.53	7.03	5.01
Merged-chr15-76332907-1	chr15	76332807	76333007	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010331, exon 6 of 12)	exon (NM_010331, exon 6 of 12)	1613.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	4.04	3.27	2.28	2.82	2.05	6.9	2.99	5.27	9.44	14.56	8.54	3.13
Merged-chr4-132539639-2	chr4	132539558	132539758	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172400, intron 2 of 8)	PB1D10|SINE|Alu	4099.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.4	4.53	2.28	3.22	4.5	10.66	3.65	7.26	6.29	4.02	8.54	5.01
Merged-chr11-107340918-1	chr11	107340818	107341018	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	Lx8|LINE|L1	129802.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.44	4.28	2.85	6.84	10.23	3.76	5.31	7.46	5.7	5.52	6.03	4.7
Merged-chr8-85081032-1	chr8	85080932	85081132	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	69.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	8.08	5.03	4.56	4.83	8.59	15.05	3.32	4.23	8.26	3.51	11.05	8.46
Merged-chr17-56927022-2	chr17	56926925	56927125	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022328, exon 2 of 12)	exon (NM_022328, exon 2 of 12)	8363.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.23	1.51	13.12	4.83	5.32	3.45	3.32	7.63	14.36	10.04	7.54	4.7
Merged-chr7-45522629-1	chr7	45522529	45522729	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_008807)	TTS (NM_008807)	3639.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	4.85	9.56	1.71	11.26	1.64	8.47	3.65	3.67	3.34	7.53	2.01	5.33
Merged-chr17-28720928-2	chr17	28720820	28721020	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	28352.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	16.15	6.79	10.27	1.21	13.91	8.15	10.96	11.66	8.06	3.51	6.03	4.39
Merged-chr18-56620874-1	chr18	56620774	56620974	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32526.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	1.21	1.26	5.13	1.61	5.73	6.59	1.99	6.42	4.72	0.5	4.52	4.07
Merged-chr12-4840937-1	chr12	4840837	4841037	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	658.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	11.71	4.02	1.71	6.03	6.95	5.02	4.65	4.54	6.69	7.53	8.54	9.71
Merged-chr13-76057406-2	chr13	76057319	76057519	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175495)	promoter-TSS (NM_175495)	-423.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	3.23	0.75	11.41	7.24	9.0	6.9	7.31	9.48	2.36	7.03	9.04	5.33
Merged-chr5-38500115-1	chr5	38500015	38500215	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145559, intron 1 of 10)	RMER19C|LTR|ERVK	2037.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	1.21	1.51	6.85	0.8	1.64	0.63	1.99	1.93	10.23	12.05	10.55	8.77
Merged-chr1-156469445-1	chr1	156469345	156469545	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	4883.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.0	0.75	4.56	2.41	2.05	1.57	4.98	2.55	8.26	12.05	24.12	13.16
Merged-chr3-106556670-2	chr3	106556569	106556769	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-8867.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.46	6.29	6.85	8.04	12.27	8.78	12.29	13.77	6.88	6.53	9.04	10.02
Merged-chr15-51848609-2	chr15	51848512	51848712	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080635, intron 1 of 7)	G-rich|Low_complexity|Low_complexity	16849.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.85	2.52	3.42	0.8	4.5	2.51	5.65	5.27	13.37	7.53	11.05	3.76
Merged-chr16-77369973-1	chr16	77369873	77370073	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	40645.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.81	0.75	0.0	3.62	5.32	1.88	5.31	11.38	3.93	6.03	6.03	0.0
Merged-chr18-7610327-1	chr18	7610227	7610427	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	-2173.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	3.63	0.0	2.28	1.61	0.0	0.0	0.0	0.0	11.41	4.02	10.55	3.13
Merged-chr1-191168322-1	chr1	191168222	191168422	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3505.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	8.08	10.06	1.14	0.8	6.55	7.53	0.0	1.23	7.08	5.02	2.01	0.94
Merged-chr7-89395568-1	chr7	89395468	89395668	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 1 of 14)	L1MA9|LINE|L1	8654.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	1.62	2.26	1.71	1.61	7.77	4.08	6.64	5.13	3.34	0.5	6.53	1.88
Merged-chr9-105033866-1	chr9	105033766	105033966	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19402.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	23.82	10.82	21.11	10.05	13.91	17.25	11.96	7.88	10.03	6.03	15.07	6.27
Merged-chr12-77100621-1	chr12	77100521	77100721	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137483.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.46	2.52	8.56	2.82	7.36	12.54	6.64	5.24	3.34	4.02	5.02	1.57
Merged-chr8-72321386-1	chr8	72321286	72321486	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	2324.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.42	7.04	3.42	3.62	8.18	4.7	6.98	3.64	11.01	8.03	8.54	5.01
Merged-chr12-32909905-1	chr12	32909805	32910005	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43884.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	7.67	2.01	3.42	3.22	3.68	6.27	2.99	6.79	3.15	3.51	2.51	3.45
Merged-chr10-58452437-3	chr10	58452326	58452526	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011240, intron 2 of 28)	intron (NM_011240, intron 2 of 28)	5574.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	6.86	5.79	4.56	2.82	2.86	9.72	1.66	7.99	7.87	6.03	12.56	5.01
Merged-chrX-78538803-3	chrX	78538681	78538881	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027322, intron 1 of 3)	Lx5c|LINE|L1	45024.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.0	3.77	10.27	10.46	10.23	2.51	19.93	10.54	10.82	8.54	18.59	6.58
Merged-chr5-143679814-3	chr5	143679720	143679920	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	28579.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	7.27	8.8	11.98	18.1	18.0	9.41	12.29	19.46	9.24	5.52	12.06	7.83
Merged-chr17-87331285-3	chr17	87331176	87331376	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 10 of 19)	intron (NM_028639, intron 10 of 19)	48390.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	11.71	7.04	6.28	9.25	9.82	5.96	6.64	15.98	6.88	4.02	13.06	7.21
Merged-chr17-84169539-3	chr17	84169456	84169656	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	18391.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	8.08	10.06	5.7	9.65	11.45	15.37	9.97	3.17	17.51	10.54	9.04	2.51
Merged-chr14-14347449-6	chr14	14347269	14347469	+	713.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 2 of 11)	intron (NM_008369, intron 2 of 11)	874.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	12.92	7.55	6.85	4.02	15.14	12.86	6.31	4.68	11.21	9.04	12.56	15.98
Merged-chr18-24305449-2	chr18	24305335	24305535	+	713.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33931.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	6.46	12.58	2.28	7.64	19.23	15.05	3.99	11.72	12.78	8.54	16.58	6.58
Merged-chr1-51334110-2	chr1	51334022	51334222	+	713.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-343.0	NR_045151	442821.0	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	6.46	6.29	5.13	8.04	8.18	9.72	4.32	12.17	6.69	13.56	10.55	3.45
Merged-chr6-97291556-2	chr6	97291459	97291659	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-38779.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	15.34	7.55	2.85	9.25	7.77	4.7	9.3	7.77	5.7	7.53	6.03	0.94
Merged-chr18-65300844-2	chr18	65300755	65300955	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 5 of 12)	intron (NM_001037294, intron 5 of 12)	51994.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	6.06	6.54	6.28	5.63	9.41	10.35	9.63	9.73	15.14	8.03	5.02	2.82
Merged-chr12-71008028-2	chr12	71007940	71008140	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	7783.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	10.5	6.79	14.83	6.03	8.18	10.03	7.97	15.42	6.69	10.54	8.54	6.89
Merged-chr17-17862442-2	chr17	17862350	17862550	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7262.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	13.73	10.82	8.56	3.22	8.59	21.01	9.3	3.81	1.77	2.51	7.54	1.25
Merged-chr13-99955790-1	chr13	99955690	99955890	+	713.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030026, intron 13 of 16)	intron (NM_030026, intron 13 of 16)	-55107.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	2.83	1.76	7.99	4.02	8.18	12.23	7.64	6.59	2.95	3.01	4.52	2.82
Merged-chr7-3903904-1	chr7	3903804	3904004	+	713.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011087, intron 1 of 9)	intron (NM_011087, intron 1 of 9)	-5754.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	4.85	2.77	3.42	2.41	11.86	10.98	9.63	4.32	6.1	7.03	6.03	5.33
Merged-chr2-23088658-3	chr2	23088614	23088814	+	713.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355638, intron 7 of 13)	intron (NM_001355638, intron 7 of 13)	19642.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	4.85	5.53	2.28	10.46	9.0	7.21	1.99	7.71	9.64	5.52	1.51	4.39
Merged-chr6-47841016-3	chr6	47840903	47841103	+	713.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027477, intron 2 of 5)	intron (NM_027477, intron 2 of 5)	5342.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	10.5	7.55	18.25	16.09	2.86	8.47	3.99	7.46	12.0	8.54	7.54	7.21
Merged-chr12-86859493-3	chr12	86859384	86859584	+	713.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25330.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	11.71	9.31	4.56	8.04	18.41	14.42	6.31	3.95	8.46	8.54	10.05	3.45
Merged-chr7-73628291-3	chr7	73628189	73628389	+	713.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58274.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	17.36	9.31	9.13	8.85	16.77	8.78	5.31	9.76	10.42	15.06	17.59	5.33
Merged-chr1-181228581-3	chr1	181228469	181228669	+	713.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16591.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.85	10.56	9.7	6.84	17.18	7.53	7.64	9.62	9.64	10.04	10.05	6.89
Merged-chrX-162828707-3	chrX	162828575	162828775	+	713.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290777, intron 1 of 5)	CpG	779.0	NM_001290776	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	8.88	6.79	6.85	6.84	9.0	7.21	9.63	2.55	10.62	19.08	7.54	4.07
Merged-chr1-45826370-3	chr1	45826242	45826442	+	713.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.44	5.79	14.83	7.64	9.0	8.78	7.31	18.5	15.54	7.53	9.04	10.02
Merged-chr6-121336774-3	chr6	121336678	121336878	+	713.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6298.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	11.31	8.55	3.42	8.45	6.14	6.27	8.64	7.21	13.96	3.01	16.08	6.58
Merged-chr8-117371420-2	chr8	117371316	117371516	+	713.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22246.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.04	2.52	10.84	2.01	5.73	6.27	8.64	16.29	10.62	2.51	10.05	5.01
Merged-chr4-95232666-2	chr4	95232581	95232781	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-180459.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.48	6.79	11.98	7.64	14.73	5.96	3.99	6.39	0.59	2.01	3.01	1.88
Merged-chr7-68087698-2	chr7	68087608	68087808	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135451.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	4.04	7.8	10.27	12.07	6.55	3.14	6.98	7.49	3.54	9.54	8.54	7.21
Merged-chr19-21714649-2	chr19	21714562	21714762	+	713.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61353.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	2.42	2.77	1.71	5.23	5.73	6.27	5.65	8.64	10.42	5.52	8.54	1.25
Merged-chr1-60621983-2	chr1	60621879	60622079	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55214.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	8.48	12.07	7.42	2.41	7.36	8.78	1.33	10.82	9.05	3.01	8.04	7.21
Merged-chr5-54005679-2	chr5	54005595	54005795	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	7172.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.44	5.79	13.12	6.03	9.0	6.27	5.65	6.67	5.11	6.53	10.05	9.4
Merged-chr11-29707614-2	chr11	29707504	29707704	+	713.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10959.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	2.42	1.01	3.42	1.61	6.14	5.96	10.63	6.53	10.62	14.56	8.04	6.58
Merged-chr6-25798395-2	chr6	25798296	25798496	+	713.724976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133931, intron 3 of 17)	intron (NM_133931, intron 3 of 17)	10830.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	2.42	4.02	3.99	6.03	6.55	9.72	16.28	7.04	7.28	9.54	11.56	6.27
Merged-chr4-6442027-3	chr4	6441960	6442160	+	713.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	12211.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	8.88	8.3	9.7	14.08	9.41	1.57	2.33	6.08	12.19	7.03	7.54	6.58
Merged-chr16-91366745-3	chr16	91366637	91366837	+	713.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6046.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.67	6.04	3.42	2.01	12.68	13.48	3.99	6.79	9.64	8.03	7.54	12.53
Merged-chr8-108767248-3	chr8	108767157	108767357	+	713.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52613.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	9.29	6.79	9.7	13.67	9.82	7.84	5.65	13.23	13.77	9.04	13.06	13.47
Merged-chr7-120098121-2	chr7	120097998	120098198	+	713.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4328.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.63	6.29	7.99	8.85	7.36	8.78	10.96	8.05	8.06	7.53	17.08	5.33
Merged-chr7-97315867-3	chr7	97315755	97315955	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	10109.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	7.27	5.53	13.12	4.83	6.55	14.42	2.99	1.63	6.29	4.52	15.58	8.77
Merged-chr4-133820966-3	chr4	133820799	133820999	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53832.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	9.29	5.79	11.98	6.03	6.55	8.78	1.66	6.08	3.54	14.06	5.02	1.88
Merged-chr14-65071041-3	chr14	65070933	65071133	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	27073.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.65	6.04	13.69	6.03	8.59	5.33	8.64	5.86	17.31	7.53	13.06	9.08
Merged-chr4-106688915-1	chr4	106688815	106689015	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001126487, intron 21 of 23)	intron (NM_001126487, intron 21 of 23)	-9971.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	8.08	8.55	21.68	9.65	0.0	0.63	1.33	0.93	6.69	4.02	8.04	6.58
Merged-chr19-44245963-2	chr19	44245854	44246054	+	713.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42666.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	5.65	9.81	3.99	7.64	6.95	12.54	5.98	5.16	5.11	3.01	12.56	2.19
Merged-chr4-12006848-2	chr4	12006768	12006968	+	713.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40294.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	5.25	3.02	3.42	12.47	9.82	6.9	7.31	19.29	7.87	10.04	4.02	12.22
Merged-chr8-85028875-2	chr8	85028774	85028974	+	713.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	2041.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	4.44	3.52	13.69	4.02	9.41	11.6	5.65	6.31	11.01	4.02	18.59	11.9
Merged-chr2-166665653-2	chr2	166665532	166665732	+	713.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	48200.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.46	11.57	7.99	4.02	9.41	13.48	12.95	5.19	10.03	2.51	4.52	2.51
Merged-chr17-80450665-2	chr17	80450554	80450754	+	713.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009231, intron 5 of 21)	B3|SINE|B2	29799.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	1.62	2.77	0.0	2.41	6.55	1.57	6.98	9.22	9.05	10.54	18.09	10.96
Merged-chr6-108625103-2	chr6	108624995	108625195	+	713.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-1928.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.04	5.79	10.27	20.11	7.36	7.21	9.97	19.74	12.78	8.03	21.61	5.64
Merged-chr10-126492394-2	chr10	126492292	126492492	+	713.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	217999.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	8.88	6.29	10.27	9.65	9.0	10.66	14.95	15.06	2.36	2.51	4.02	3.13
Merged-chr15-96621886-3	chr15	96621797	96621997	+	713.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 2 of 15)	intron (NM_001166456, intron 2 of 15)	20065.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	9.29	9.31	9.13	10.86	13.91	11.29	8.64	15.28	10.03	9.54	10.05	0.31
Merged-chr4-120667267-3	chr4	120667178	120667378	+	713.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019563, exon 1 of 1)	exon (NM_019563, exon 1 of 1)	715.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	8.48	8.05	7.42	16.89	4.91	4.39	6.98	8.97	7.87	16.07	6.03	8.46
Merged-chr16-22061862-3	chr16	22061753	22061953	+	713.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 15 of 15)	intron (NM_183029, intron 15 of 15)	52369.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	1.62	8.05	6.28	7.24	9.41	12.86	6.98	10.74	11.8	10.54	7.54	8.77
Merged-chr13-110392409-2	chr13	110392305	110392505	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2639.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	12.52	5.03	2.28	7.24	3.27	6.9	1.33	10.29	12.59	3.51	12.06	2.51
Merged-chr12-100471315-2	chr12	100471194	100471394	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 3 of 19)	PB1D10|SINE|Alu	49528.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	6.46	8.05	12.55	6.84	8.59	5.64	11.63	18.59	7.47	1.51	3.01	1.25
Merged-chr6-143175471-1	chr6	143175371	143175571	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	8241.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	5.65	3.52	5.7	2.82	7.77	8.78	2.66	5.55	7.87	1.51	7.03	3.45
Merged-chr11-49075838-1	chr11	49075738	49075938	+	713.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-749.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.04	2.26	3.99	2.41	7.36	6.27	3.65	3.11	11.8	7.03	10.05	8.14
Merged-chr6-128133909-2	chr6	128133796	128133996	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	9682.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	8.88	5.79	4.56	9.25	11.86	5.96	13.62	12.11	8.26	4.52	7.03	3.45
Merged-chr6-4747265-2	chr6	4747163	4747363	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001130191)	promoter-TSS (NM_001130191)	-43.0	NM_001040611	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	12.92	6.79	3.42	4.83	9.82	8.15	7.97	5.5	4.33	5.52	8.04	4.07
Merged-chr9-106386357-1	chr9	106386257	106386457	+	713.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17725.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.21	2.77	2.28	1.61	4.5	1.57	7.31	2.24	8.65	16.57	10.05	10.65
Merged-chr7-63940422-2	chr7	63940362	63940562	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1547.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.44	7.8	1.14	2.41	2.45	4.08	1.33	2.8	20.85	29.12	10.55	8.77
Merged-chrX-57362768-1	chrX	57362668	57362868	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24039.0	NM_152801	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	2.42	2.01	13.12	3.62	7.77	5.64	3.65	8.47	2.56	3.01	5.02	0.94
Merged-chr11-22813163-2	chr11	22813069	22813269	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46566.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.06	6.29	26.24	11.66	4.09	8.47	2.99	10.09	5.7	15.06	4.52	6.27
Merged-chr10-111368389-1	chr10	111368289	111368489	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR48|LTR|ERV1	69710.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	4.04	4.02	0.0	3.62	6.55	1.88	5.65	5.97	0.39	4.02	5.02	0.94
Merged-chr15-75920372-1	chr15	75920272	75920472	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025412, intron 1 of 5)	intron (NM_025412, intron 1 of 5)	1188.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	2.42	2.52	0.0	3.62	2.05	2.51	4.65	4.26	4.52	4.02	9.04	0.94
Merged-chr11-30291281-1	chr11	30291181	30291381	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.42	3.02	0.57	2.82	6.14	9.72	4.98	6.84	0.39	0.0	0.0	0.94
Merged-chr6-52586809-3	chr6	52586701	52586901	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145567, intron 4 of 7)	intron (NM_145567, intron 4 of 7)	53499.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	7.27	8.8	9.13	6.84	6.55	10.66	4.98	8.02	11.6	12.55	14.07	6.58
Merged-chr1-87180470-1	chr1	87180370	87180570	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2844.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	7.27	3.02	5.13	4.42	8.18	5.64	2.33	6.0	4.13	2.51	8.54	7.21
Merged-chr5-67463842-2	chr5	67463745	67463945	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015582)	promoter-TSS (NR_015582)	-53.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	8.88	6.54	5.13	9.65	7.36	4.39	5.65	17.16	0.39	0.0	0.0	0.0
Merged-chr3-38115063-1	chr3	38114963	38115163	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93056.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.02	2.52	0.0	3.22	4.91	5.33	5.98	6.45	11.01	8.03	10.05	3.45
Merged-chr11-8621846-3	chr11	8621750	8621950	+	713.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42685.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.88	7.29	7.99	4.02	10.64	10.98	4.98	10.57	7.67	8.03	7.54	5.01
Merged-chr8-83757095-2	chr8	83756992	83757192	+	713.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15781.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.81	0.0	0.0	1.21	8.18	5.96	2.99	5.52	13.18	15.57	13.57	6.58
Merged-chr7-83724793-3	chr7	83724697	83724897	+	713.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	7601.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	10.5	9.81	15.4	6.84	6.95	9.09	8.3	4.29	12.39	10.04	3.52	4.7
Merged-chr10-61281262-2	chr10	61281169	61281369	+	713.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7831.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	10.09	17.61	14.26	8.85	5.32	4.08	4.32	4.85	8.26	3.51	10.55	2.19
Merged-chr19-55545737-3	chr19	55545652	55545852	+	713.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	156452.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	8.08	9.31	6.85	5.23	7.77	17.56	5.98	9.5	7.67	12.05	12.56	10.02
Merged-chr1-36784873-2	chr1	36784783	36784983	+	713.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5899.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	10.09	9.31	14.26	7.64	3.27	7.84	2.99	8.36	9.44	8.03	3.52	3.76
Merged-chr16-52149602-2	chr16	52149504	52149704	+	713.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	118055.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.63	13.58	3.42	6.84	6.95	7.53	3.65	4.49	13.77	4.52	18.09	8.46
Merged-chr14-76780776-1	chr14	76780676	76780876	+	713.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20645.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.62	1.01	2.28	0.4	0.0	0.63	2.66	0.0	15.34	8.54	5.53	8.14
Merged-chr6-117168700-1	chr6	117168600	117168800	+	713.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021704, exon 1 of 3)	exon (NM_021704, exon 1 of 3)	165.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	4.04	6.54	6.85	1.21	5.73	4.08	4.32	2.55	5.51	2.01	3.52	0.31
Merged-chr11-118228903-1	chr11	118228803	118229003	+	713.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-16161.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.44	5.53	5.7	8.85	6.95	5.96	6.64	6.45	3.74	1.0	6.03	2.51
Merged-chr8-120529417-1	chr8	120529317	120529517	+	713.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	L1MB5|LINE|L1	-6440.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.04	3.77	3.99	7.64	6.14	3.45	8.3	7.35	3.34	9.04	4.52	1.57
Merged-chr16-13863620-3	chr16	13863503	13863703	+	713.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	39542.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	7.27	5.79	6.85	5.23	11.45	3.14	7.97	10.88	9.83	9.04	12.56	9.4
Merged-chr12-85570049-3	chr12	85569960	85570160	+	713.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29045.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	8.08	9.31	9.7	5.23	13.09	8.78	11.63	14.8	11.6	14.56	9.55	8.46
Merged-chr13-105327098-2	chr13	105326995	105327195	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-32610.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	7.27	7.29	6.85	7.24	16.77	5.02	7.64	12.76	12.39	13.05	7.54	6.27
Merged-chr7-127873217-2	chr7	127873113	127873313	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362192, intron 2 of 4)	intron (NM_001362192, intron 2 of 4)	2429.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	3.23	2.26	4.56	3.62	10.64	9.41	6.98	11.19	9.05	4.52	6.53	6.58
Merged-chr2-73467242-2	chr2	73467124	73467324	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-13335.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	2.83	4.02	5.13	1.61	7.77	4.08	6.31	9.64	6.69	9.04	6.53	6.27
Merged-chr13-74029203-3	chr13	74029119	74029319	+	713.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	19800.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	12.11	4.78	7.99	10.46	7.36	10.66	8.64	14.3	11.21	15.57	11.05	6.58
Merged-chr11-57524812-2	chr11	57524705	57524905	+	713.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	6140.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	12.52	8.55	14.83	9.25	7.36	8.15	3.65	13.23	2.16	3.01	11.05	3.76
Merged-chr9-21909627-2	chr9	21909537	21909737	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001324531, exon 5 of 5)	3' UTR (NM_001324531, exon 5 of 5)	8546.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	8.48	2.26	3.42	4.83	4.5	9.41	4.98	13.65	1.77	2.01	9.04	12.84
Merged-chr6-120915408-3	chr6	120915293	120915493	+	713.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1431.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	8.88	4.78	7.42	8.45	7.77	10.03	2.99	4.4	13.77	9.54	22.61	16.92
Merged-chr7-44358530-3	chr7	44358446	44358646	+	713.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001034115)	TTS (NM_001034115)	16484.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	10.5	3.02	9.13	3.22	14.73	11.92	11.29	5.1	14.36	2.51	17.08	15.98
Merged-chr8-125113494-3	chr8	125113355	125113555	+	713.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	59260.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.63	5.79	6.28	6.03	4.5	15.05	4.98	4.37	5.51	4.52	5.53	5.64
Merged-chr13-113337435-3	chr13	113337458	113337658	+	713.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	127899.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.4	1.51	0.57	0.0	4.91	1.88	1.0	3.25	3.54	4.52	4.52	2.19
Merged-chr12-17556969-2	chr12	17556872	17557072	+	713.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	12099.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.48	3.27	5.7	11.66	9.0	6.27	2.99	11.66	5.11	12.05	7.03	7.83
Merged-chr5-9071544-2	chr5	9071432	9071632	+	713.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-29205.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	12.11	1.76	1.14	5.63	10.64	8.47	6.98	9.11	8.26	2.51	9.55	4.07
Merged-chrX-38452348-2	chrX	38452253	38452453	+	713.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 1 of 9)	intron (NR_152733, intron 1 of 9)	4107.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	5.65	2.01	7.42	5.63	4.09	12.23	12.95	8.78	7.28	9.54	10.05	9.08
Merged-chr2-145863306-3	chr2	145863162	145863362	+	713.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-39979.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.02	5.03	10.27	8.45	6.95	11.29	18.93	28.32	8.06	7.53	20.1	5.01
Merged-chr16-58509255-2	chr16	58509126	58509326	+	713.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	14200.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.85	2.52	3.42	2.01	9.82	8.15	5.31	9.76	8.26	8.54	7.54	7.21
Merged-chr4-135875343-2	chr4	135875240	135875440	+	713.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	2.42	2.26	0.0	0.0	6.55	7.84	3.65	8.5	11.21	10.04	10.05	12.22
Merged-chr10-63236037-3	chr10	63235932	63236132	+	713.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7765.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	9.69	9.31	7.99	9.25	13.09	16.93	10.3	5.86	14.75	9.04	12.56	10.96
Merged-chr11-102137790-3	chr11	102137688	102137888	+	713.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-7725.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	10.9	3.27	11.41	10.05	15.14	7.21	9.63	6.22	9.64	4.52	12.06	8.14
Merged-chr19-53259533-1	chr19	53259433	53259633	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4328.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	4.04	0.5	4.56	2.41	5.32	2.82	3.99	6.67	6.69	2.01	3.52	7.52
Merged-chr12-81549944-1	chr12	81549844	81550044	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17033.0	NM_001309848	105940408.0		NM_001309847	ENSMUSG00000021139	Gm20498	ARIP2a|Synj2bp-cox16	predicted gene 20498	protein-coding	3.63	4.02	18.83	11.66	0.0	0.0	0.0	0.56	0.2	0.0	1.0	3.45
Merged-chr1-53777906-1	chr1	53777806	53778006	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	7309.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.25	1.51	1.71	0.4	9.0	6.27	2.33	5.05	2.56	3.51	1.51	0.94
Merged-chr16-85112355-1	chr16	85112255	85112455	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	61352.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.44	1.26	5.7	2.82	2.86	0.63	5.65	1.79	0.98	4.52	2.51	3.45
Merged-chr4-156200273-1	chr4	156200173	156200373	+	713.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015783, intron 1 of 1)	URR1A|DNA|hAT-Charlie	545.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	8.88	20.12	3.99	1.21	1.23	17.56	0.0	8.5	14.55	10.54	9.04	7.21
Merged-chr10-60261705-1	chr10	60261605	60261805	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15923.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.04	3.77	5.13	8.04	8.59	4.39	1.66	5.8	6.29	7.03	3.01	6.89
Merged-chr11-106202287-1	chr11	106202187	106202387	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026009, intron 11 of 12)	intron (NM_026009, intron 11 of 12)	-8684.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	14.13	7.55	3.42	0.4	4.91	10.03	3.99	3.14	10.03	8.54	2.01	2.82
Merged-chr18-73693612-1	chr18	73693512	73693712	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008540, intron 1 of 11)	intron (NM_008540, intron 1 of 11)	10129.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	7.67	5.28	6.28	4.42	10.23	17.56	3.32	3.36	3.15	5.02	4.02	1.25
Merged-chr2-36217791-2	chr2	36217687	36217887	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12639.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	8.08	7.04	13.69	4.83	4.91	3.14	8.97	8.16	7.08	6.03	8.04	6.89
Merged-chr14-21683031-2	chr14	21682931	21683131	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	31545.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.23	5.28	6.85	4.42	11.45	5.33	7.64	9.64	7.87	2.51	9.04	3.76
Merged-chr1-77044049-1	chr1	77043949	77044149	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	452719.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.81	0.0	0.0	2.01	7.36	5.02	0.66	5.41	4.52	7.03	8.54	3.76
Merged-chr4-63668504-2	chr4	63668409	63668609	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34088.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	2.02	6.29	14.83	12.47	10.23	7.21	13.29	10.74	6.1	12.55	8.04	4.7
Merged-chr9-85573935-2	chr9	85573843	85574043	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	175391.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	2.83	5.79	11.41	4.42	8.59	3.14	6.31	9.67	4.52	1.51	5.02	2.82
Merged-chr10-34036726-2	chr10	34036625	34036825	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162937)	promoter-TSS (NM_001162937)	-872.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	5.65	8.55	6.85	6.03	4.5	5.64	8.3	5.21	9.05	5.52	9.04	2.82
Merged-chr3-100765576-2	chr3	100765479	100765679	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-59880.0	NM_178594	242122.0	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	1.62	4.02	5.7	5.23	4.09	1.57	10.63	6.56	8.46	2.01	7.03	8.77
Merged-chr15-6436003-1	chr15	6435903	6436103	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 11 of 13)	intron (NM_001008702, intron 11 of 13)	-9330.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.81	2.01	3.99	1.21	5.32	2.2	8.64	5.89	4.13	7.03	3.52	4.07
Merged-chrX-100511348-1	chrX	100511248	100511448	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008784, intron 5 of 5)	HAL1M8|LINE|L1	-13490.0	NM_001114084	668257.0	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	4.04	1.76	1.14	7.64	4.91	6.59	6.31	9.56	6.29	3.51	6.03	4.7
Merged-chr1-13531683-2	chr1	13531581	13531781	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58229.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	2.42	1.26	4.56	4.02	8.59	2.82	6.31	8.3	9.24	10.04	17.08	4.39
Merged-chr19-5604066-3	chr19	5603965	5604165	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362372, intron 10 of 12)	intron (NM_001362372, intron 10 of 12)	2192.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	8.08	6.54	9.13	1.21	0.82	5.33	1.99	3.9	25.57	20.59	33.16	17.54
Merged-chr2-120002263-1	chr2	120002163	120002363	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-15254.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	4.85	7.04	5.13	3.62	4.09	8.15	4.98	6.53	7.28	4.02	7.03	11.9
Merged-chr2-11798404-1	chr2	11798304	11798504	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	20651.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	1.62	1.51	3.42	0.4	0.82	2.51	3.99	4.54	2.36	1.0	1.0	3.13
Merged-chr8-13641414-1	chr8	13641314	13641514	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36173.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.42	1.26	2.85	1.21	7.36	12.54	3.32	5.55	4.33	1.51	3.52	1.57
Merged-chr2-101856345-2	chr2	101856235	101856435	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	RMER15|LTR|ERVL	-17355.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.62	1.01	1.14	0.8	3.27	7.53	7.31	7.37	6.88	10.54	13.06	5.01
Merged-chr1-43910890-1	chr1	43910790	43910990	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MusHAL1|LINE|L1	-23104.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	4.85	3.52	7.99	12.07	6.95	4.08	12.95	7.15	13.18	4.52	6.53	1.57
Merged-chr15-34027290-3	chr15	34027127	34027327	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-55492.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.81	8.3	9.7	4.83	16.36	5.33	11.29	7.12	3.15	5.52	2.51	5.01
Merged-chr2-120574757-1	chr2	120574657	120574857	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	7086.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	5.25	3.02	4.56	1.61	1.64	5.64	0.66	4.35	5.51	4.02	5.02	6.27
Merged-chr9-14067673-1	chr9	14067573	14067773	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-208628.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.4	2.77	1.71	1.61	7.77	2.2	1.33	5.27	1.77	3.51	1.51	2.82
Merged-chr15-64163385-3	chr15	64163292	64163492	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 9 of 28)	L1MB5|LINE|L1	-102944.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.25	5.28	17.11	9.25	8.18	3.14	1.66	16.77	12.0	6.03	9.04	5.95
Merged-chr14-54715063-2	chr14	54714927	54715127	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2853.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	1.62	8.05	5.13	2.01	2.05	5.02	3.65	5.55	5.7	5.52	5.02	4.07
Merged-chr15-62360834-2	chr15	62360741	62360941	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141390.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	3.23	4.78	15.97	0.8	4.5	5.02	9.97	8.27	13.18	7.03	10.05	7.21
Merged-chr7-19179295-1	chr7	19179195	19179395	+	713.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347582, exon 2 of 22)	exon (NM_001347582, exon 2 of 22)	-1875.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	9.29	7.04	1.71	6.03	3.27	5.02	4.98	3.84	14.95	11.05	5.53	3.76
Merged-chr17-87474408-1	chr17	87474308	87474508	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27473.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	4.04	2.77	7.99	6.44	4.5	9.72	3.32	5.27	7.67	6.03	9.04	3.13
Merged-chr6-100341965-1	chr6	100341865	100342065	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54607.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	7.27	2.01	7.99	10.86	6.55	5.33	2.33	9.79	6.1	4.02	6.03	5.95
Merged-chr6-31191177-3	chr6	31191086	31191286	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 1 of 2)	LTR33C|LTR|ERVL	27288.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.06	7.04	4.56	7.24	7.77	10.66	2.66	11.02	14.75	17.07	11.56	10.02
Merged-chr4-13281573-2	chr4	13281488	13281688	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	374751.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	10.9	5.53	3.42	2.41	6.95	11.29	10.3	6.39	5.11	4.02	2.51	5.33
Merged-chr17-13055352-1	chr17	13055252	13055452	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3072.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	4.04	4.28	2.28	2.01	7.36	9.09	19.93	10.96	6.29	9.04	8.54	3.76
Merged-chr9-78429874-1	chr9	78429774	78429974	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_173386)	TTS (NM_173386)	13363.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	4.44	4.53	3.99	10.05	4.09	5.33	7.97	6.64	3.93	0.5	6.03	0.94
Merged-chr16-65423010-1	chr16	65422910	65423110	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97619.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.63	2.26	1.14	8.04	10.64	10.66	6.98	6.36	8.46	3.01	4.02	4.07
Merged-chr13-28457721-1	chr13	28457621	28457821	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	253152.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.5	0.0	4.83	1.23	1.25	5.31	5.86	0.59	1.51	3.01	1.57
Merged-chr6-113692920-1	chr6	113692820	113693020	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 11 of 11)	RMER17C-int|LTR|ERVK	-4130.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.86	2.52	6.28	6.84	6.95	4.39	2.66	7.68	3.93	6.03	4.02	5.64
Merged-chr4-53123657-1	chr4	53123557	53123757	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36238.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.81	2.52	0.57	0.0	4.09	5.02	0.33	5.61	1.97	5.52	1.51	0.94
Merged-chr1-173452564-1	chr1	173452464	173452664	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	L2a|LINE|L2	31960.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.44	2.01	7.99	10.05	2.05	6.9	2.66	7.37	5.51	2.51	5.53	0.63
Merged-chr10-111130952-1	chr10	111130852	111131052	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33850.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.23	1.51	0.57	3.22	11.45	0.0	5.65	7.23	3.74	1.51	1.0	2.82
Merged-chr1-88211858-1	chr1	88211758	88211958	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-101.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	2.42	5.03	2.28	0.0	12.27	3.76	1.33	5.1	5.31	5.52	2.51	3.76
Merged-chr8-83081277-2	chr8	83081190	83081390	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-84062.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	11.71	6.54	13.12	6.44	7.36	5.64	5.65	9.34	4.33	7.53	4.52	2.82
Merged-chr1-172305401-1	chr1	172305301	172305501	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6966.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	1.62	3.02	0.0	0.0	6.95	7.53	4.32	5.07	4.52	0.5	5.02	0.63
Merged-chr2-164403031-2	chr2	164402945	164403145	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009036)	promoter-TSS (NM_009036)	-149.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	8.48	7.04	6.85	3.22	4.91	9.41	6.31	4.63	4.92	3.01	9.04	7.52
Merged-chr5-35722953-1	chr5	35722853	35723053	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359895, intron 2 of 17)	intron (NM_001359895, intron 2 of 17)	6323.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.23	1.51	4.56	0.0	5.73	1.25	5.31	6.25	0.0	1.0	2.51	2.19
Merged-chr8-18568737-3	chr8	18568655	18568855	+	712.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26376.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	11.71	6.04	13.69	12.07	8.59	13.48	20.93	30.42	6.29	7.53	15.07	6.58
Merged-chr15-36931639-3	chr15	36931535	36931735	+	712.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	75767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	9.69	8.3	5.13	7.24	10.23	7.84	4.32	7.43	9.64	9.54	11.56	11.9
Merged-chr10-67984765-2	chr10	67984663	67984863	+	712.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359319, intron 1 of 11)	intron (NM_001359319, intron 1 of 11)	5193.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.85	6.29	5.7	2.41	9.82	11.6	7.31	7.21	16.13	14.06	16.58	9.4
Merged-chr8-110266098-2	chr8	110265989	110266189	+	712.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-888.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0.81	2.26	0.0	2.41	3.27	7.21	7.31	4.18	18.29	15.57	17.59	14.41
Merged-chr1-131238636-2	chr1	131238531	131238731	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	6547.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	8.08	13.08	11.41	11.66	7.36	4.39	7.64	5.58	4.72	6.53	10.55	3.45
Merged-chr15-53345583-2	chr15	53345486	53345686	+	712.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010162, exon 1 of 11)	5' UTR (NM_010162, exon 1 of 11)	597.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.44	3.52	2.28	11.66	4.09	8.78	2.33	5.36	6.88	7.03	5.53	6.89
Merged-chr6-3427288-2	chr6	3427196	3427396	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27725.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	14.54	9.06	7.42	3.22	9.82	10.98	7.31	8.36	18.69	2.51	8.04	5.33
Merged-chr8-90861730-2	chr8	90861624	90861824	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	32889.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.25	6.54	9.13	5.23	10.23	10.35	7.97	10.88	8.06	10.04	2.51	5.95
Merged-chr11-45734977-2	chr11	45734869	45735069	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73114.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	6.06	8.55	10.27	7.24	10.23	15.68	11.96	21.36	4.72	2.51	22.11	6.27
Merged-chr8-119446647-2	chr8	119446534	119446734	+	712.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-85.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	6.06	6.04	3.42	4.83	11.05	11.6	1.0	7.32	8.85	10.04	4.52	4.39
Merged-chr19-5798961-4	chr19	5798925	5799125	+	712.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-3044.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	8.08	4.53	2.28	1.61	6.14	2.82	2.66	3.98	4.92	5.52	7.03	7.83
Merged-chr16-5474151-2	chr16	5474042	5474242	+	712.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-218186.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	6.06	8.8	13.69	11.26	1.64	17.87	6.64	5.69	3.93	8.03	4.52	2.19
Merged-chr2-84635833-3	chr2	84635733	84635933	+	712.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	13647.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	8.88	4.28	9.7	18.1	17.59	5.96	10.63	9.45	10.03	13.56	6.53	6.27
Merged-chr5-72554549-3	chr5	72554463	72554663	+	712.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	5082.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	10.9	5.28	6.85	15.69	6.55	8.78	9.97	10.96	12.78	5.02	8.54	8.77
Merged-chr9-123951354-3	chr9	123951229	123951429	+	712.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17363.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.04	6.29	11.41	9.65	13.5	10.98	5.31	15.2	5.9	5.02	10.05	8.46
Merged-chr6-54939940-3	chr6	54939871	54940071	+	712.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	31690.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.85	4.28	10.27	9.65	4.5	1.25	5.65	13.21	5.51	11.05	9.04	10.34
Merged-chr6-82772135-3	chr6	82772043	82772243	+	712.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	2311.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	10.5	9.81	10.27	5.23	8.59	12.54	6.64	10.57	6.29	6.53	10.55	2.51
Merged-chr9-124068318-2	chr9	124068238	124068438	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33845.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	6.46	5.28	19.4	8.45	9.0	10.98	5.98	13.91	5.51	11.55	5.53	3.76
Merged-chr5-147418927-2	chr5	147418833	147419033	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033625, intron 1 of 2)	intron (NR_033625, intron 1 of 2)	313.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	4.85	7.04	3.42	7.64	6.95	11.92	3.65	11.41	6.88	4.52	8.54	7.21
Merged-chr7-139434252-2	chr7	139434155	139434355	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	33761.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	2.42	4.02	2.28	5.63	6.55	7.53	6.31	6.76	8.46	8.54	13.06	9.08
Merged-chr8-120131328-3	chr8	120131226	120131426	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-13603.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	9.69	2.77	13.12	10.46	8.59	7.21	14.28	16.6	4.13	8.54	12.06	4.7
Merged-chrX-134143559-2	chrX	134143464	134143664	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	18364.0	NM_183319	331524.0	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	5.25	10.31	13.69	8.04	5.32	3.76	8.97	2.07	4.13	9.54	1.51	9.08
Merged-chr12-40082656-1	chr12	40082556	40082756	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009132, intron 5 of 13)	intron (NM_009132, intron 5 of 13)	-44669.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	4.85	3.27	2.28	0.0	6.55	9.72	3.65	6.93	6.69	6.53	8.54	4.39
Merged-chr13-107826660-2	chr13	107826565	107826765	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	63399.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	6.46	5.03	6.28	4.83	6.95	7.53	9.3	9.14	8.06	12.05	12.06	7.52
Merged-chr12-51355473-2	chr12	51355374	51355574	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015099, intron 4 of 14)	MTD|LTR|ERVL-MaLR	7244.0	NM_001015099	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	5.65	5.28	12.55	1.61	13.09	4.39	5.98	11.41	13.37	3.01	7.03	9.08
Merged-chr6-38875803-2	chr6	38875686	38875886	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	CpG	404.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.86	8.8	1.14	16.89	5.73	5.02	3.65	8.66	6.69	10.04	3.52	5.01
Merged-chr13-78043436-3	chr13	78043354	78043554	+	712.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	18552.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	9.69	8.8	4.56	4.02	9.41	6.27	9.3	10.99	12.78	8.03	17.59	4.7
Merged-chr14-56777737-4	chr14	56777659	56777859	+	712.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025682, intron 1 of 8)	CpG	559.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	10.9	6.54	10.27	12.47	4.09	2.82	10.96	10.68	9.44	8.03	10.55	7.52
Merged-chr5-20470657-3	chr5	20470538	20470738	+	712.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 10 of 22)	RMER13A|LTR|ERVK	411486.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.65	5.53	8.56	9.25	6.55	3.76	3.99	10.07	9.44	13.05	7.54	7.52
Merged-chr1-153443871-1	chr1	153443771	153443971	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033162, intron 6 of 9)	B4A|SINE|B4	18662.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	4.04	3.02	1.71	0.0	5.32	6.9	5.65	7.82	4.33	8.54	5.02	5.95
Merged-chr3-86758776-1	chr3	86758676	86758876	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077688, intron 53 of 54)	intron (NM_001077688, intron 53 of 54)	162108.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	4.85	4.02	2.28	9.25	6.14	4.7	7.31	11.66	5.7	8.54	7.54	5.64
Merged-chr9-124440340-3	chr9	124440321	124440521	+	712.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16634.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	5.65	7.29	5.13	4.83	4.09	4.08	5.98	4.29	9.64	2.51	9.55	9.71
Merged-chr6-24703729-1	chr6	24703629	24703829	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29516.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.4	1.51	0.0	2.01	2.05	6.27	6.98	8.3	0.79	0.0	3.52	3.13
Merged-chr15-43383210-1	chr15	43383110	43383310	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93826.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0.81	1.76	2.28	1.61	9.0	1.88	6.31	4.65	3.74	1.51	3.52	1.25
Merged-chr10-43827456-1	chr10	43827356	43827556	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131055, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	1549.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	2.02	0.75	0.0	0.8	6.95	6.9	5.31	6.53	4.72	2.01	3.52	4.39
Merged-chr15-27647951-2	chr15	27647852	27648052	+	712.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-17259.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	9.69	13.33	7.42	5.23	10.64	5.33	6.64	9.39	7.08	6.53	11.56	3.76
Merged-chr14-31494152-3	chr14	31494059	31494259	+	712.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	599.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	8.88	11.57	6.28	9.25	22.91	9.72	9.63	4.71	27.34	14.06	13.57	7.52
Merged-chr1-86041042-3	chr1	86040948	86041148	+	712.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-4815.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	6.46	12.58	2.28	7.64	13.09	7.84	4.98	8.94	8.46	8.54	17.59	9.71
Merged-chr15-53255964-3	chr15	53255850	53256050	+	712.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	90233.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.46	7.55	3.42	13.27	5.32	9.09	6.64	6.79	7.87	4.52	10.55	4.39
Merged-chr5-65401782-3	chr5	65401659	65401859	+	712.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024471, intron 7 of 10)	intron (NM_024471, intron 7 of 10)	10262.0	NM_001310612	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	10.5	6.54	6.85	12.87	13.09	24.15	3.99	5.24	15.93	9.04	9.04	9.71
Merged-chr6-145710069-4	chr6	145710001	145710201	+	712.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94138.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	6.86	6.54	7.42	5.63	11.86	8.15	21.92	20.16	9.24	7.53	4.52	1.88
Merged-chr8-69792849-3	chr8	69792764	69792964	+	712.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133224, intron 1 of 25)	intron (NM_133224, intron 1 of 25)	1701.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	14.13	4.02	9.7	10.86	5.73	6.9	5.98	8.38	4.52	10.04	12.56	8.14
Merged-chr2-59976569-2	chr2	59976437	59976637	+	712.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93931.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	8.05	12.55	4.02	7.36	7.84	9.63	11.92	8.06	2.51	14.57	4.7
Merged-chr17-50419077-1	chr17	50418977	50419177	+	712.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	-90470.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	2.83	3.27	0.0	1.21	4.5	1.57	0.66	4.32	14.55	8.54	11.56	5.95
Merged-chr13-64344306-1	chr13	64344206	64344406	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26214.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	5.25	4.78	5.13	5.63	5.73	5.33	6.98	8.21	1.77	16.07	11.05	5.01
Merged-chr9-110635407-3	chr9	110635325	110635525	+	712.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106186)	TTS (NR_106186)	690.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	7.67	5.03	10.27	2.01	2.86	8.47	4.98	5.07	10.03	9.54	7.54	6.27
Merged-chr8-92998819-2	chr8	92998738	92998938	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009209, exon 14 of 14)	3' UTR (NM_009209, exon 14 of 14)	37791.0	NM_009209	20538.0	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	7.27	8.8	6.28	4.02	6.55	12.54	5.98	8.41	6.69	13.56	8.54	8.14
Merged-chr6-127264239-1	chr6	127264139	127264339	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43728.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	1.62	1.26	7.99	2.41	2.05	2.82	3.99	5.21	1.97	4.52	6.03	4.39
Merged-chr4-134082255-2	chr4	134082166	134082366	+	712.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162970, intron 12 of 19)	intron (NM_001162970, intron 12 of 19)	12807.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	7.67	5.53	12.55	6.44	1.23	9.41	1.0	1.77	11.6	4.02	11.05	5.01
Merged-chr6-92241365-2	chr6	92241275	92241475	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009426)	TTS (NM_009426)	3275.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	2.42	1.01	0.0	2.82	3.68	5.96	2.66	5.58	12.78	9.54	9.55	6.27
Merged-chr12-5226912-1	chr12	5226812	5227012	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	148770.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	6.46	2.01	1.71	1.61	4.5	4.7	3.99	9.34	8.85	9.54	15.07	5.01
Merged-chr14-31432964-1	chr14	31432864	31433064	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3136.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.04	1.26	2.28	3.22	7.36	2.51	2.99	3.03	2.56	3.51	3.01	6.58
Merged-chr9-110623223-2	chr9	110623107	110623307	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026012, exon 2 of 5)	5' UTR (NM_026012, exon 2 of 5)	1186.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	5.25	5.28	6.85	2.41	6.14	9.72	5.65	9.08	13.77	9.04	5.02	7.21
Merged-chr2-147009990-2	chr2	147009876	147010076	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3023.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	6.46	3.77	6.85	2.01	4.91	7.53	10.63	5.69	9.44	13.56	11.56	6.27
Merged-chr15-78870007-3	chr15	78869907	78870107	+	712.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7183.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	14.54	9.31	11.41	4.02	6.95	12.86	3.32	8.1	8.85	17.57	5.53	7.83
Merged-chr10-67189196-1	chr10	67189096	67189296	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	3446.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	8.08	9.56	5.13	2.41	6.95	9.72	2.66	4.63	9.44	6.03	6.53	5.95
Merged-chrX-159757353-3	chrX	159757284	159757484	+	712.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	48783.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.25	5.79	4.56	7.64	9.82	8.78	6.64	12.36	10.23	13.05	11.05	8.14
Merged-chr17-74880253-3	chr17	74880154	74880354	+	712.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125275.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	7.67	4.53	10.84	7.24	6.14	2.2	5.31	7.71	12.0	7.53	23.11	9.08
Merged-chr1-136676464-2	chr1	136676394	136676594	+	712.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6902.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	1.62	3.02	3.99	2.82	7.77	12.86	8.3	8.94	8.65	22.09	9.55	8.77
Merged-chr9-120601648-2	chr9	120601538	120601738	+	712.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24307.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	10.09	5.79	6.28	8.45	12.27	5.64	1.99	6.14	8.26	14.06	14.57	6.89
Merged-chr11-34080045-2	chr11	34079938	34080138	+	712.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 13 of 20)	intron (NM_010696, intron 13 of 20)	18516.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	6.86	1.26	6.85	4.83	11.05	3.45	3.65	5.05	12.59	5.02	12.06	7.52
Merged-chr10-81502833-3	chr10	81502730	81502930	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010304, exon 7 of 7)	3' UTR (NM_010304, exon 7 of 7)	-2693.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	18.17	6.04	15.97	8.45	13.5	11.29	5.98	9.93	12.59	10.54	25.12	7.83
Merged-chr15-76534147-3	chr15	76534056	76534256	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4590.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	10.9	7.8	5.7	2.41	7.36	4.39	3.32	7.35	6.88	11.05	5.02	10.02
Merged-chr19-32495250-3	chr19	32495162	32495362	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9493.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	6.46	7.8	21.68	4.83	3.68	5.64	8.97	8.47	16.33	11.05	9.55	15.98
Merged-chr2-120469489-1	chr2	120469389	120469589	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-122.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	7.67	7.04	13.12	22.12	9.41	7.53	3.32	9.14	3.93	6.53	2.51	6.58
Merged-chr19-10184405-1	chr19	10184305	10184505	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	1517.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	4.85	7.04	0.57	4.42	8.59	9.41	6.31	5.44	0.2	5.02	0.0	0.31
Merged-chr15-74933658-3	chr15	74933532	74933732	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21419.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.42	2.52	4.56	2.82	1.23	0.63	5.98	2.89	8.26	12.05	4.02	7.21
Merged-chr14-67860570-1	chr14	67860470	67860670	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	-825.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	3.23	5.28	6.28	2.01	5.73	9.09	6.64	5.83	4.72	8.03	2.01	1.88
Merged-chr4-63548694-3	chr4	63548594	63548794	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	3929.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	6.86	9.06	2.28	4.83	3.68	5.02	15.28	8.94	11.01	19.58	14.57	8.46
Merged-chr2-167980560-1	chr2	167980460	167980660	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001080708)	TTS (NM_001080708)	30033.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	3.23	2.26	3.42	12.07	2.86	11.92	9.3	6.5	2.75	11.55	3.52	3.45
Merged-chr10-13268311-3	chr10	13268147	13268347	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359294, intron 2 of 11)	GA-rich|Low_complexity|Low_complexity	56042.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	9.29	5.03	6.28	6.03	11.05	6.27	11.63	5.44	13.18	9.04	6.03	9.4
Merged-chr11-29801932-3	chr11	29801845	29802045	+	712.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 21 of 41)	MLT1E1A|LTR|ERVL-MaLR	23723.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.27	4.02	7.42	7.24	24.14	11.6	24.25	20.94	17.51	9.54	14.07	5.33
Merged-chr19-46041800-2	chr19	46041724	46041924	+	712.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2203.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	5.65	6.29	7.99	0.4	11.05	5.64	4.98	7.35	7.87	11.05	3.01	3.76
Merged-chr3-121500370-2	chr3	121500280	121500480	+	712.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145394, intron 9 of 14)	intron (NM_145394, intron 9 of 14)	31964.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	2.42	8.8	7.99	1.61	2.45	8.15	5.65	10.07	13.18	6.53	7.03	4.39
Merged-chr14-56375931-2	chr14	56375823	56376023	+	712.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138652, intron 10 of 22)	intron (NM_138652, intron 10 of 22)	10855.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	7.27	6.79	9.7	7.24	7.36	11.29	3.65	7.96	9.05	8.03	8.54	5.01
Merged-chr10-127678145-3	chr10	127678063	127678263	+	712.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	1098.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	14.13	11.32	5.7	6.84	9.0	13.17	1.33	5.52	8.85	7.03	11.56	16.6
Merged-chr11-5485927-3	chr11	5485838	5486038	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34703.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.65	8.8	6.28	8.45	11.05	10.98	6.98	7.35	22.03	10.04	13.57	1.88
Merged-chr2-14055227-3	chr2	14055106	14055306	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012396, intron 1 of 5)	CpG	829.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	5.65	3.52	7.42	5.23	8.59	8.78	13.29	9.34	13.37	13.05	9.55	10.02
Merged-chr19-29180559-3	chr19	29180458	29180658	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45279.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	10.9	3.52	2.85	11.26	15.14	7.21	5.31	5.72	5.11	10.54	15.07	7.21
Merged-chr13-107449898-1	chr13	107449798	107449998	+	712.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19924.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	2.83	4.78	9.13	1.21	9.0	10.03	6.31	5.78	8.85	8.03	6.53	0.31
Merged-chr17-87149945-3	chr17	87149845	87150045	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42266.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.04	7.04	9.7	15.28	16.77	19.13	2.33	17.19	10.23	3.51	8.54	10.65
Merged-chr18-54908479-3	chr18	54908380	54908580	+	712.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	81700.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.46	6.79	12.55	15.69	6.55	15.37	6.98	12.73	14.16	8.54	10.55	6.58
Merged-chr1-135154614-3	chr1	135154502	135154702	+	712.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026823, intron 5 of 6)	intron (NM_026823, intron 5 of 6)	7768.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	7.27	5.53	11.41	5.23	14.73	10.66	4.32	6.28	9.83	9.04	14.07	10.34
Merged-chr13-52980328-3	chr13	52980248	52980448	+	712.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017373, intron 1 of 1)	CpG	691.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	4.85	2.52	7.42	2.41	9.82	7.21	9.97	3.48	13.96	3.51	14.57	12.84
Merged-chr19-11263174-2	chr19	11263092	11263292	+	712.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007641, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2959.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	4.44	5.03	5.7	5.23	7.36	7.53	6.31	5.8	11.6	12.05	5.02	7.83
Merged-chr3-31104222-2	chr3	31104108	31104308	+	712.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	MTD|LTR|ERVL-MaLR	9150.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.23	4.53	1.71	0.4	0.82	15.68	10.3	2.47	11.21	6.53	8.54	4.7
Merged-chr13-119406265-2	chr13	119406167	119406367	+	712.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2744.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	10.5	7.04	15.97	6.03	11.86	3.14	7.31	12.03	7.28	4.52	13.57	4.7
Merged-chr10-75872903-2	chr10	75872743	75872943	+	712.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12G|LTR|ERVK	-12593.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	7.27	6.29	2.28	4.83	9.41	3.76	4.65	4.93	2.36	8.54	6.03	5.01
Merged-chr5-90907766-3	chr5	90907608	90907808	+	712.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3809.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	7.27	3.77	10.84	0.8	9.82	4.7	3.99	3.25	9.83	8.54	4.02	2.19
Merged-chr18-36286277-3	chr18	36286217	36286417	+	712.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5155.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	14.13	10.56	11.41	2.01	4.91	4.39	1.33	7.71	8.26	9.54	10.05	6.58
Merged-chr3-8767635-3	chr3	8767524	8767724	+	712.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-100586.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	8.08	4.28	5.7	10.05	12.27	6.9	11.96	11.52	9.83	12.05	5.02	10.34
Merged-chr7-30181547-3	chr7	30181478	30181678	+	712.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2593.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	6.86	5.53	0.0	2.82	4.91	6.27	1.99	3.2	14.16	20.08	17.08	6.89
Merged-chr6-85239234-1	chr6	85239134	85239334	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178639, intron 10 of 13)	intron (NM_178639, intron 10 of 13)	51303.0	NM_010131	13796.0	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	6.86	8.55	7.99	3.62	2.45	6.9	12.29	7.71	5.11	6.03	1.51	9.08
Merged-chr7-31195493-1	chr7	31195393	31195593	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	33135.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	5.65	2.52	4.56	7.24	7.36	12.54	6.64	8.47	9.05	3.51	8.04	8.77
Merged-chr3-144604412-1	chr3	144604312	144604512	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2C2|LTR|ERVL	33985.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.63	3.52	7.99	7.24	5.32	8.47	4.32	7.85	9.44	7.53	9.04	9.4
Merged-chr8-125533935-1	chr8	125533835	125534035	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	35928.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.83	3.52	6.85	10.05	2.45	4.08	8.64	6.48	4.72	10.54	9.04	6.27
Merged-chr10-111992761-1	chr10	111992661	111992861	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028608, intron 2 of 5)	intron (NM_028608, intron 2 of 5)	4503.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	4.04	1.76	0.0	2.41	4.91	5.02	4.32	7.15	6.1	3.51	8.04	7.52
Merged-chr10-17565440-2	chr10	17565335	17565535	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157793.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.44	2.77	5.13	8.85	15.14	10.66	1.99	12.98	4.33	3.51	17.08	7.52
Merged-chr6-89282272-1	chr6	89282172	89282372	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	3453.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	3.63	3.52	0.0	0.8	3.27	6.9	2.66	5.61	3.34	2.51	4.52	4.7
Merged-chr9-56259979-2	chr9	56259902	56260102	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98932.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	2.02	1.01	1.71	2.01	2.86	5.96	1.99	3.76	13.77	17.07	13.06	7.52
Merged-chr3-104683143-1	chr3	104683043	104683243	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44479.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	3.63	9.31	1.71	7.24	7.36	5.64	4.32	5.75	2.56	4.52	6.03	3.13
Merged-chr2-59396876-1	chr2	59396776	59396976	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10194.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	5.03	3.99	4.83	11.05	6.9	5.31	5.69	4.33	3.51	11.05	6.58
Merged-chr11-105927183-1	chr11	105927083	105927283	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_181071, exon 26 of 26)	3' UTR (NM_181071, exon 26 of 26)	17304.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	1.62	4.02	1.14	0.8	4.91	5.64	4.65	1.15	7.08	3.51	10.05	0.63
Merged-chrX-144231624-1	chrX	144231524	144231724	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66166.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	2.42	2.01	0.0	0.4	10.64	2.51	1.66	6.56	3.34	1.0	3.01	2.82
Merged-chr17-40875754-2	chr17	40875652	40875852	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027834, exon 2 of 2)	3' UTR (NM_027834, exon 2 of 2)	4806.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	14.54	4.78	9.7	9.25	2.45	5.64	4.65	1.63	18.49	11.55	5.53	12.84
Merged-chr10-89776317-1	chr10	89776217	89776417	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029166, intron 4 of 20)	intron (NM_029166, intron 4 of 20)	31326.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.4	3.77	2.85	4.02	0.0	1.88	1.33	2.64	12.59	3.51	6.03	9.71
Merged-chr16-29944731-1	chr16	29944631	29944831	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34393.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	3.63	2.52	6.28	1.61	9.82	6.59	8.64	6.98	3.15	5.02	5.53	4.7
Merged-chr9-105494097-1	chr9	105493997	105494197	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359822, intron 2 of 28)	intron (NM_001359822, intron 2 of 28)	1036.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	2.42	2.01	7.99	7.24	5.32	4.08	1.99	5.19	16.13	8.54	13.06	6.27
Merged-chr18-65707408-1	chr18	65707308	65707508	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177028, exon 2 of 15)	exon (NM_177028, exon 2 of 15)	9140.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.63	11.07	3.99	5.63	7.77	7.84	3.65	4.15	0.98	4.02	1.0	4.7
Merged-chr4-15149124-1	chr4	15149024	15149224	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178617)	promoter-TSS (NM_178617)	7.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.81	1.51	0.0	0.0	2.86	1.25	5.98	4.21	0.0	0.5	0.5	1.25
Merged-chr15-86272598-1	chr15	86272498	86272698	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	MTD|LTR|ERVL-MaLR	-5077.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.67	6.04	2.28	5.23	4.91	2.82	7.31	4.71	6.69	3.51	2.51	4.07
Merged-chr10-84146316-2	chr10	84146218	84146418	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-45621.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	9.69	1.76	3.42	12.47	4.91	4.39	4.98	8.38	3.74	4.02	1.0	1.88
Merged-chr10-87812835-1	chr10	87812735	87812935	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45430.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.85	1.01	3.42	0.8	4.91	8.15	7.97	6.14	3.54	1.51	5.53	5.01
Merged-chr5-35758482-1	chr5	35758382	35758582	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177678, intron 1 of 19)	CpG	602.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	8.48	7.04	0.0	6.03	9.82	7.84	4.98	2.78	8.06	4.52	10.05	3.76
Merged-chr10-84409452-1	chr10	84409352	84409552	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31019.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	9.29	5.28	2.28	3.22	6.55	6.59	2.99	5.72	7.67	9.04	5.53	5.33
Merged-chr5-125349875-1	chr5	125349775	125349975	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-8781.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.83	3.02	1.71	2.41	0.82	1.25	2.66	3.73	10.82	10.54	11.56	7.52
Merged-chr1-165606279-1	chr1	165606179	165606379	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 2 of 5)	intron (NM_001083897, intron 2 of 5)	28262.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.48	4.78	6.28	10.86	4.09	3.45	6.31	15.76	11.6	3.51	6.03	4.39
Merged-chr17-69076477-3	chr17	69076410	69076610	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	CpG	833.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	9.29	8.55	4.56	7.24	6.55	5.64	4.32	5.8	9.64	5.02	7.54	3.45
Merged-chr11-87212494-3	chr11	87212388	87212588	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	85413.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	10.5	5.28	10.27	11.66	13.91	13.8	2.99	6.25	8.65	7.53	10.05	4.7
Merged-chr8-86825740-1	chr8	86825640	86825840	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59518.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	3.02	0.0	1.61	6.55	6.59	6.98	7.01	0.98	0.0	4.02	0.31
Merged-chr7-121070734-1	chr7	121070634	121070834	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030691, exon 2 of 6)	exon (NM_030691, exon 2 of 6)	3796.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.63	4.53	0.57	0.8	2.86	2.82	1.99	2.72	1.18	5.52	2.51	1.57
Merged-chr4-123748775-1	chr4	123748675	123748875	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023423, intron 1 of 4)	B1F|SINE|Alu	1524.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	2.42	2.77	3.42	1.21	2.45	3.45	2.33	2.3	4.72	7.03	0.5	5.01
Merged-chr11-6680030-4	chr11	6679977	6680177	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19841.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	4.85	8.3	6.85	4.02	3.68	5.33	3.65	3.59	9.24	1.0	2.51	4.07
Merged-chr9-119976645-1	chr9	119976545	119976745	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357562, intron 2 of 4)	intron (NM_001357562, intron 2 of 4)	6378.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	11.31	8.3	0.57	5.23	2.86	7.21	2.66	1.04	16.13	13.05	1.51	5.33
Merged-chr14-103762456-2	chr14	103762360	103762560	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63028.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	4.28	5.13	2.82	8.18	5.96	5.98	8.89	7.28	2.01	12.56	1.25
Merged-chr6-99187611-1	chr6	99187511	99187711	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	78904.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.63	3.52	2.85	2.01	6.14	8.78	3.65	8.52	2.75	2.51	4.52	2.82
Merged-chr3-146121790-1	chr3	146121690	146121890	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134160)	promoter-TSS (NM_134160)	-1.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.81	1.51	2.85	0.4	5.73	4.7	2.66	5.52	0.39	0.0	2.01	0.31
Merged-chr18-17723840-1	chr18	17723740	17723940	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-142850.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.81	3.02	0.0	6.44	7.77	4.39	1.66	6.9	5.7	4.52	6.53	3.76
Merged-chr14-76914010-1	chr14	76913910	76914110	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122607.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	4.44	2.52	4.56	10.46	4.09	4.39	5.65	10.04	4.13	0.5	7.54	4.7
Merged-chr4-8823343-1	chr4	8823243	8823443	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72019.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.42	2.52	5.13	0.0	8.18	3.45	7.31	7.51	3.15	0.0	5.02	4.07
Merged-chr2-92017196-1	chr2	92017096	92017296	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	6974.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	7.67	5.03	23.96	13.67	2.45	2.2	0.33	2.97	1.77	0.0	2.51	2.19
Merged-chr16-74411674-1	chr16	74411574	74411774	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175549, exon 1 of 28)	5' UTR (NM_175549, exon 1 of 28)	151.0	NM_001358494	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	1.62	2.52	3.42	0.4	7.77	3.76	5.31	5.33	1.18	3.51	0.5	1.88
Merged-chr3-96148133-3	chr3	96148037	96148237	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025613, intron 7 of 12)	intron (NM_001025613, intron 7 of 12)	-13833.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	9.69	7.55	6.85	13.67	12.27	15.05	1.99	6.53	21.83	10.54	13.06	4.39
Merged-chr14-21811506-2	chr14	21811392	21811592	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20069.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	6.46	5.79	2.28	4.83	6.55	7.84	7.64	10.65	10.42	9.04	9.04	7.21
Merged-chr3-9696752-2	chr3	9696635	9696835	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-86650.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.65	1.01	5.13	6.84	9.41	6.27	9.97	15.48	6.69	9.04	8.54	9.71
Merged-chr1-46022440-1	chr1	46022340	46022540	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037691, intron 3 of 3)	intron (NR_037691, intron 3 of 3)	7997.0	NR_037690	212225.0	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo	2.83	1.26	5.13	0.0	4.91	8.78	6.31	6.53	5.11	5.02	6.53	7.52
Merged-chr13-74597204-1	chr13	74597104	74597304	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42649.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	6.06	1.51	10.27	8.45	3.27	2.2	3.32	4.26	9.64	6.53	14.07	9.4
Merged-chr16-43405281-2	chr16	43405183	43405383	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	MIR|SINE|MIR	14913.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.86	2.52	2.28	4.83	11.05	9.09	5.65	13.26	8.26	5.02	6.53	6.27
Merged-chr11-80154878-4	chr11	80154742	80154942	+	711.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 1 of 10)	intron (NM_172133, intron 1 of 10)	680.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.65	7.04	2.28	0.0	7.77	5.02	4.65	1.91	5.31	19.08	15.58	12.53
Merged-chr17-87263965-2	chr17	87263869	87264069	+	711.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139295, intron 1 of 3)	7SK|RNA|RNA	1978.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.42	1.26	3.99	10.46	6.55	10.66	7.31	11.64	8.85	8.03	11.05	6.58
Merged-chr5-31049472-2	chr5	31049343	31049543	+	711.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177621)	promoter-TSS (NM_001177621)	-519.0	NM_001177622	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	4.85	2.52	3.42	3.62	12.27	8.15	7.31	6.31	5.9	11.55	7.03	5.64
Merged-chr2-151968009-3	chr2	151967897	151968097	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035478)	promoter-TSS (NR_035478)	-380.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	5.25	5.79	15.97	1.21	6.95	8.47	2.66	7.35	12.0	4.52	8.04	6.89
Merged-chr8-68175277-3	chr8	68175199	68175399	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25A|LTR|ERVK	-101229.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	9.69	7.29	6.28	15.28	22.5	8.78	8.97	25.23	9.24	4.52	10.05	4.39
Merged-chr6-143079294-2	chr6	143079174	143079374	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362118, intron 6 of 25)	intron (NM_001362118, intron 6 of 25)	20878.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	3.63	6.79	5.7	5.63	5.73	0.63	5.65	7.4	7.87	2.01	7.54	3.45
Merged-chr9-120133617-3	chr9	120133499	120133699	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3165.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	12.11	20.63	11.41	8.85	2.86	15.05	2.66	4.91	10.42	13.05	8.54	7.83
Merged-chr3-146564518-3	chr3	146564443	146564643	+	711.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32606.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	7.67	10.56	3.42	14.08	5.73	15.68	4.98	12.0	10.42	8.03	8.04	2.82
Merged-chr5-142910382-3	chr5	142910293	142910493	+	711.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3639.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.25	5.79	10.84	8.45	6.55	9.09	15.61	14.3	8.26	6.03	9.55	10.65
Merged-chr6-91677558-3	chr6	91677471	91677671	+	711.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6496.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	14.13	4.78	7.99	2.41	8.18	10.03	5.98	5.21	14.75	14.56	8.54	6.58
Merged-chr10-37280057-2	chr10	37279956	37280156	+	711.775024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141130.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.23	4.02	3.99	2.82	11.86	6.9	6.64	13.23	9.83	9.54	10.55	6.89
Merged-chr3-84686985-2	chr3	84686891	84687091	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	20799.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.04	2.52	10.27	6.03	12.27	13.17	4.98	16.71	7.08	7.53	12.56	10.34
Merged-chr10-14197396-2	chr10	14197279	14197479	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	231000.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.04	4.28	10.84	5.23	6.14	3.45	6.31	3.98	13.37	26.61	22.61	5.33
Merged-chr7-68282797-2	chr7	68282680	68282880	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013811, intron 1 of 8)	intron (NM_001013811, intron 1 of 8)	-6186.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	7.27	6.04	12.55	9.65	9.41	12.54	10.63	20.72	9.83	7.53	19.6	5.33
Merged-chr10-26322902-2	chr10	26322792	26322992	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	51180.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	6.46	6.29	22.25	7.24	6.55	8.15	6.64	13.23	8.85	5.02	19.6	10.02
Merged-chr3-58372582-2	chr3	58372469	58372669	+	711.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42151.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	9.29	6.79	2.28	6.44	7.36	10.03	8.3	9.39	2.16	4.02	2.01	2.19
Merged-chr17-15376487-2	chr17	15376382	15376582	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-659.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	1.62	5.03	1.71	3.22	4.5	5.33	2.33	6.31	3.54	3.51	6.03	9.4
Merged-chr17-57363025-3	chr17	57362904	57363104	+	711.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 2 of 22)	RLTR22_Mur|LTR|ERVK	4318.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	10.5	3.52	11.98	9.25	10.64	15.37	6.64	5.5	10.62	19.58	20.1	7.21
Merged-chr2-148082488-1	chr2	148082388	148082588	+	711.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35519.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.42	4.28	2.85	2.41	1.64	3.14	1.99	4.07	10.62	13.56	20.1	8.46
Merged-chr4-126257297-3	chr4	126257211	126257411	+	711.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-992.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	10.9	8.55	5.13	2.01	9.82	5.96	5.31	3.93	11.41	7.53	9.55	10.02
Merged-chr8-11419871-3	chr8	11419785	11419985	+	711.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 20 of 47)	intron (NM_009932, intron 20 of 47)	-58044.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	10.5	1.26	7.99	4.83	5.32	15.68	5.65	8.13	11.6	6.03	14.57	4.39
Merged-chr13-45904796-3	chr13	45904689	45904889	+	711.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	60202.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	8.08	6.54	9.13	4.83	13.09	12.23	6.64	6.34	8.65	8.54	2.51	2.51
Merged-chr13-95843056-1	chr13	95842956	95843156	+	711.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	MIRc|SINE|MIR	48866.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.81	1.26	1.14	0.0	0.82	0.63	0.66	0.5	10.03	8.54	4.52	8.46
Merged-chr1-91523924-1	chr1	91523824	91524024	+	711.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028718, intron 13 of 14)	intron (NM_028718, intron 13 of 14)	-16641.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.81	5.28	10.27	12.87	10.23	5.02	5.65	8.78	4.33	7.03	14.57	5.95
Merged-chr11-69037406-2	chr11	69037310	69037510	+	711.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8227.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	14.94	9.06	12.55	5.23	8.59	8.47	2.33	6.36	4.72	6.53	2.01	8.46
Merged-chr7-98838051-2	chr7	98837960	98838160	+	711.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-785.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.46	2.01	2.28	7.64	3.68	7.21	2.66	5.89	11.21	7.53	13.57	10.96
Merged-chr6-13837105-3	chr6	13836966	13837166	+	711.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330666, exon 4 of 4)	5' UTR (NM_001330666, exon 4 of 4)	2876.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	8.08	7.8	9.13	6.44	6.55	7.21	5.31	10.29	6.88	4.52	3.01	4.7
Merged-chr10-5807735-2	chr10	5807636	5807836	+	711.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2271.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	8.88	9.06	10.84	9.25	6.95	6.9	12.95	10.6	8.06	3.51	4.52	3.45
Merged-chr18-23495909-1	chr18	23495809	23496009	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361217, intron 2 of 20)	intron (NM_001361217, intron 2 of 20)	-1573.0	NM_001361215	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	1.62	0.0	0.0	0.0	7.77	3.76	6.64	6.62	0.79	0.0	0.0	0.63
Merged-chr1-134066314-1	chr1	134066214	134066414	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	12841.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.46	2.52	3.42	2.82	4.91	5.64	1.66	5.47	2.36	4.52	5.02	6.89
Merged-chr1-61351034-3	chr1	61350936	61351136	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27396.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	7.67	7.29	1.14	11.26	8.18	4.39	14.95	13.93	15.34	9.04	11.05	9.71
Merged-chr18-36711192-1	chr18	36711092	36711292	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20B3|LTR|ERVK	-15267.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.25	6.04	1.14	4.02	14.32	4.7	4.98	7.57	5.51	1.51	7.03	4.7
Merged-chr5-34238675-2	chr5	34238587	34238787	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 2 of 12)	L1M4|LINE|L1	49637.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	3.23	5.28	11.41	16.49	7.77	5.33	8.97	9.79	3.93	0.0	3.01	2.51
Merged-chr2-6048120-1	chr2	6048020	6048220	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081132, intron 19 of 21)	intron (NM_001081132, intron 19 of 21)	82065.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	4.04	5.28	5.13	3.62	4.5	0.94	5.65	5.02	5.7	7.03	5.53	2.82
Merged-chr15-55308772-2	chr15	55308757	55308957	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	1107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	9.29	1.76	1.14	2.41	2.05	2.51	5.31	3.93	2.56	0.0	3.52	1.57
Merged-chr15-25986421-2	chr15	25986275	25986475	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144523, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	2009.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	2.02	2.77	2.85	3.22	4.5	5.02	1.99	2.66	3.74	10.04	4.02	2.51
Merged-chr10-77621692-2	chr10	77621602	77621802	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-619.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	8.08	7.8	9.13	4.02	6.55	3.76	4.98	9.22	10.23	4.52	15.58	5.01
Merged-chr4-133250833-2	chr4	133250736	133250936	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016693, intron 22 of 28)	CpG	10018.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	10.09	2.77	4.56	0.0	2.45	9.09	1.33	5.52	17.51	12.05	9.55	2.51
Merged-chr11-113778053-2	chr11	113777963	113778163	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGCTG)n|Simple_repeat|Simple_repeat	-26248.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	8.88	3.02	6.85	5.23	3.68	2.51	1.66	4.18	7.28	5.52	13.57	6.89
Merged-chr2-167961244-2	chr2	167961158	167961358	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28931.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.86	5.53	3.42	8.04	8.18	6.27	9.3	11.41	8.65	3.51	4.02	6.27
Merged-chr1-131085350-2	chr1	131085177	131085377	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	PB1D7|SINE|Alu	12566.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.23	5.03	0.0	6.84	0.82	2.82	1.99	2.47	5.9	0.5	5.02	4.07
Merged-chr15-3340078-2	chr15	3339981	3340181	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048178, intron 6 of 8)	intron (NM_001048178, intron 6 of 8)	-36555.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	3.23	4.78	5.7	6.84	11.05	4.7	2.66	13.99	8.06	3.01	12.56	5.64
Merged-chr11-32666608-2	chr11	32666498	32666698	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	24043.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.04	8.8	9.13	4.02	4.09	9.41	3.32	1.57	8.26	6.53	12.56	2.82
Merged-chr2-94264684-2	chr2	94264601	94264801	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3302.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	1.21	1.51	0.57	6.03	4.09	2.82	2.66	4.4	9.83	3.51	7.54	8.46
Merged-chr9-124090658-2	chr9	124090565	124090765	+	711.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11518.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	7.67	3.77	9.7	8.04	9.82	15.37	8.3	9.34	12.59	20.08	17.59	7.83
Merged-chr7-132932196-3	chr7	132932095	132932295	+	711.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207302, intron 1 of 9)	intron (NM_207302, intron 1 of 9)	1053.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	4.44	4.78	9.7	7.64	9.82	9.72	7.31	9.28	8.26	6.03	13.06	7.52
Merged-chr2-150859891-3	chr2	150859811	150860011	+	711.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	L1ME1|LINE|L1	-17341.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.04	6.54	6.85	8.85	3.68	8.15	8.97	17.13	9.64	13.05	11.56	8.46
Merged-chr15-83086100-3	chr15	83086012	83086212	+	711.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14093.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	7.27	6.54	3.42	12.47	10.23	21.32	11.63	8.92	26.75	10.04	13.57	21.93
Merged-chr6-108468097-2	chr6	108467995	108468195	+	711.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-21648.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.44	2.01	1.14	8.04	10.23	6.59	10.63	24.31	8.65	10.04	17.59	8.14
Merged-chr4-63283466-1	chr4	63283366	63283566	+	711.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025685, intron 22 of 60)	Charlie1b|DNA|hAT-Charlie	26615.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	3.63	4.02	3.42	3.22	1.64	0.63	1.0	1.82	10.03	15.57	11.05	8.77
Merged-chr1-51789532-2	chr1	51789442	51789642	+	711.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	126436.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	3.63	2.77	6.85	12.87	8.18	6.9	6.64	9.34	8.65	9.04	9.55	11.28
Merged-chr5-38309091-2	chr5	38309003	38309203	+	711.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10406.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	2.02	6.54	16.54	0.4	2.86	8.47	4.65	6.87	10.62	5.02	13.06	7.21
Merged-chr14-77896181-1	chr14	77896081	77896281	+	711.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8058.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	6.46	5.28	3.42	5.63	3.68	3.45	3.32	5.13	10.03	13.56	22.11	6.58
Merged-chr16-50201789-1	chr16	50201689	50201889	+	711.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 15 of 16)	intron (NM_027444, intron 15 of 16)	-128937.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	4.85	3.27	1.14	4.83	5.32	5.64	5.65	5.52	5.9	8.03	7.03	4.7
Merged-chr15-101283377-3	chr15	101283267	101283467	+	711.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-934.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	7.67	11.07	8.56	10.86	9.0	10.35	3.32	10.63	11.21	8.54	15.58	7.21
Merged-chr13-96586502-1	chr13	96586402	96586602	+	711.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023420, intron 3 of 17)	ORR1D1|LTR|ERVL-MaLR	43767.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	5.65	2.01	5.13	4.02	6.55	10.98	7.31	7.09	1.38	2.01	2.01	1.25
Merged-chr9-85343189-1	chr9	85343089	85343289	+	711.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16039.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.85	3.52	7.42	6.03	4.91	2.2	7.64	2.89	4.33	5.52	5.02	2.19
Merged-chr7-107047779-3	chr7	107047669	107047869	+	711.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11633.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	9.29	7.55	6.28	18.9	7.36	5.33	11.63	16.49	6.29	8.54	9.55	10.02
Merged-chr3-87909658-2	chr3	87909569	87909769	+	711.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2819.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	1.62	5.28	1.14	0.8	11.86	10.98	2.99	4.63	11.8	14.56	14.07	9.4
Merged-chr13-8744726-2	chr13	8744641	8744841	+	711.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 8 of 10)	intron (NR_110345, intron 8 of 10)	126303.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.81	2.52	0.0	0.0	7.36	9.72	6.98	10.88	11.21	5.02	9.55	8.14
Merged-chr18-75943725-2	chr18	75943618	75943818	+	711.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	MLT1A0|LTR|ERVL-MaLR	-115608.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.42	0.5	1.14	4.02	4.91	8.78	5.65	7.63	7.28	16.07	14.07	9.4
Merged-chr2-122150613-4	chr2	122150535	122150735	+	711.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2948.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	6.86	9.31	5.7	7.24	6.55	6.59	5.31	2.24	9.24	10.04	8.54	5.33
Merged-chr11-62555303-4	chr11	62555156	62555356	+	711.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3525.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	8.48	4.28	0.0	8.85	0.82	3.76	1.33	3.48	5.31	5.02	6.53	1.25
Merged-chr17-28894536-3	chr17	28894432	28894632	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-10733.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	5.65	8.55	12.55	9.25	7.77	6.59	6.64	5.3	6.49	13.56	19.6	3.13
Merged-chr2-164760606-3	chr2	164760519	164760719	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133763, intron 8 of 12)	MTD|LTR|ERVL-MaLR	-9310.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	10.9	7.55	7.99	4.83	9.82	9.09	4.65	4.09	13.18	4.02	28.14	11.28
Merged-chr7-74665069-3	chr7	74664971	74665171	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110291.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.04	4.53	11.41	14.88	2.45	7.84	1.99	10.85	12.59	12.55	24.12	13.47
Merged-chr10-81523155-3	chr10	81523074	81523274	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	ID_B1|SINE|B4	1051.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	8.08	8.05	9.13	1.61	6.95	9.72	5.31	12.36	16.13	9.04	8.54	8.14
Merged-chr18-5124864-2	chr18	5124764	5124964	+	711.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40867.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	4.04	3.27	4.56	10.05	5.32	6.9	4.98	9.08	9.64	10.54	16.08	4.7
Merged-chr3-98019512-2	chr3	98019413	98019613	+	711.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	5975.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.44	4.02	2.28	12.47	9.82	7.84	3.99	10.82	11.01	4.02	6.03	7.21
Merged-chr19-6015345-5	chr19	6015363	6015563	+	711.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007600)	promoter-TSS (NM_007600)	-216.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	6.86	1.76	7.42	6.44	5.73	3.76	7.64	3.76	3.93	8.54	7.54	7.52
Merged-chr7-16931055-3	chr7	16930922	16931122	+	711.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6990.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	4.44	3.27	9.7	4.42	4.91	4.7	3.65	7.74	19.28	6.03	14.07	10.34
Merged-chr11-79703648-3	chr11	79703531	79703731	+	711.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8338.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	13.73	16.85	7.99	8.04	4.09	12.54	4.65	5.89	9.64	12.05	14.57	5.33
Merged-chr16-10488020-2	chr16	10487922	10488122	+	711.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-156.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	2.42	8.05	8.56	8.04	10.23	9.72	5.31	7.07	7.47	6.53	7.54	7.52
Merged-chr4-24617061-3	chr4	24616956	24617156	+	711.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033531, exon 10 of 10)	3' UTR (NM_001033531, exon 10 of 10)	120605.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	2.42	6.54	10.84	5.63	14.32	10.98	10.63	15.06	7.47	9.04	12.06	6.89
Merged-chr2-166516481-2	chr2	166516393	166516593	+	711.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-48029.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	2.42	2.52	6.28	2.01	5.32	7.53	6.98	3.7	13.37	9.54	15.58	15.35
Merged-chr11-120355769-1	chr11	120355669	120355869	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5765.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	6.46	4.78	7.42	5.63	2.86	4.08	3.32	3.11	11.21	8.54	16.58	6.27
Merged-chr8-4237915-1	chr8	4237815	4238015	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-825.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	3.23	2.01	3.99	5.63	9.0	10.03	5.98	5.07	4.33	2.51	3.52	5.95
Merged-chr8-115701943-1	chr8	115701843	115702043	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4951.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.63	2.77	2.28	4.83	2.86	1.57	5.98	10.6	4.92	1.51	8.04	7.83
Merged-chr6-121053974-1	chr6	121053874	121054074	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	-10490.0	NR_138098	100043793.0	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	8.48	9.06	3.42	0.8	5.73	2.51	0.33	1.49	5.7	7.53	10.55	1.57
Merged-chr14-76279665-1	chr14	76279565	76279765	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	28203.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	1.62	2.01	7.42	8.45	3.27	2.82	5.98	5.52	4.52	3.51	4.52	4.39
Merged-chr2-119210402-1	chr2	119210302	119210502	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028054, intron 1 of 10)	intron (NM_028054, intron 1 of 10)	-1607.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0.81	3.52	2.28	0.0	6.55	7.53	1.66	4.57	2.56	4.52	3.52	2.19
Merged-chr2-93445432-1	chr2	93445332	93445532	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	7240.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	3.23	11.07	5.13	10.46	2.45	1.57	0.66	1.65	4.33	0.0	4.52	3.13
Merged-chr17-30010618-1	chr17	30010518	30010718	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	5579.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.81	3.52	5.7	3.22	2.45	7.21	2.66	5.58	2.56	4.02	3.52	0.31
Merged-chr2-25115455-1	chr2	25115355	25115555	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_T|LINE|L1	-20250.0	NM_172204	241275.0	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	3.23	4.02	2.28	3.62	8.18	5.96	1.33	6.2	5.7	5.02	5.02	1.88
Merged-chr11-120369819-2	chr11	120369749	120369949	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027980, exon 10 of 10)	3' UTR (NM_027980, exon 10 of 10)	8315.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	5.65	5.28	9.13	9.25	7.36	5.33	1.99	6.36	10.23	7.53	5.02	6.89
Merged-chr12-69419794-1	chr12	69419694	69419894	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47644.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.81	1.26	1.14	0.8	1.64	4.7	1.0	3.56	15.14	7.53	20.1	8.46
Merged-chrX-168913700-1	chrX	168913600	168913800	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009707, intron 1 of 12)	intron (NM_009707, intron 1 of 12)	118601.0	NM_009707	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	2.83	2.01	3.99	5.63	10.64	4.39	4.98	7.01	2.75	3.01	5.02	1.25
Merged-chr15-88523641-2	chr15	88523535	88523735	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76667.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	8.08	2.52	14.83	6.03	8.59	8.15	1.99	11.07	9.83	5.02	14.07	10.02
Merged-chr11-116647936-1	chr11	116647836	116648036	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	6377.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	2.02	5.53	4.56	5.63	2.86	8.47	2.66	5.1	5.11	2.01	6.53	3.45
Merged-chr1-155912077-2	chr1	155911994	155912194	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039184, intron 17 of 37)	intron (NM_001039184, intron 17 of 37)	61161.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	11.71	6.54	7.99	10.05	5.73	6.9	6.31	11.07	0.59	0.0	0.5	0.63
Merged-chr6-112721694-1	chr6	112721594	112721794	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-25024.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	2.42	2.01	1.71	9.25	5.32	6.27	2.99	10.79	1.57	3.01	1.0	6.58
Merged-chr10-120064662-1	chr10	120064562	120064762	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358809, intron 22 of 23)	intron (NM_001358809, intron 22 of 23)	48303.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	2.42	2.01	1.71	4.83	4.91	7.53	1.99	6.25	3.93	1.51	4.52	5.01
Merged-chr7-45362891-1	chr7	45362791	45362991	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029741, intron 1 of 29)	intron (NM_029741, intron 1 of 29)	-3270.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	4.04	3.52	5.7	1.61	2.05	7.21	1.33	2.05	10.62	8.03	3.52	5.33
Merged-chr1-127214400-1	chr1	127214300	127214500	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	B4A|SINE|B4	9414.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.81	3.02	0.0	0.0	0.82	0.63	2.66	1.57	13.77	10.04	9.04	3.76
Merged-chr2-84961544-2	chr2	84961448	84961648	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18913.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	8.48	5.79	19.97	7.24	6.14	3.76	11.63	6.95	12.78	9.54	18.09	8.77
Merged-chr6-119500112-1	chr6	119500012	119500212	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	20444.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	2.02	8.05	0.0	4.42	7.36	1.57	1.33	5.61	2.95	2.01	5.02	1.88
Merged-chr9-65001385-3	chr9	65001348	65001548	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20269.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	7.67	5.79	10.84	8.45	3.27	4.39	2.99	3.95	4.72	1.0	1.0	3.13
Merged-chr12-99974605-2	chr12	99974497	99974697	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10098.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.25	7.04	6.85	4.42	9.82	3.14	5.98	8.55	14.36	4.52	3.01	7.21
Merged-chr17-25006654-1	chr17	25006554	25006754	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	8576.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	10.09	6.54	9.7	8.45	3.68	8.78	3.65	5.5	0.0	1.0	3.52	0.94
Merged-chr8-122428432-1	chr8	122428332	122428532	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	4508.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	3.23	5.79	10.84	3.22	4.09	4.7	4.65	6.36	8.85	2.51	3.01	2.82
Merged-chr5-64321763-1	chr5	64321663	64321863	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	91406.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.62	0.75	0.57	2.82	7.36	2.51	3.65	6.2	0.98	3.51	3.52	2.51
Merged-chr19-46327092-1	chr19	46326992	46327192	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347454)	promoter-TSS (NM_001347454)	64.0	NM_028627	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	4.44	8.05	8.56	3.62	12.68	10.03	4.32	2.38	13.57	6.03	9.04	6.58
Merged-chr1-88103178-1	chr1	88103078	88103278	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_201410)	promoter-TSS (NM_201410)	-79.0	NM_201410	394435.0	Mm.300095	NM_201410	ENSMUSG00000090145	Ugt1a6b	A9'|Ugt1a9	UDP glucuronosyltransferase 1 family, polypeptide A6B	protein-coding	12.11	7.55	13.69	6.03	2.05	5.64	4.65	2.19	0.0	1.0	1.0	0.0
Merged-chr6-145823987-2	chr6	145823881	145824081	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15598.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	9.69	6.54	7.99	4.83	11.05	7.53	3.65	10.21	4.52	9.04	12.06	8.46
Merged-chr14-78678080-1	chr14	78677980	78678180	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	HAL1|LINE|L1	-33629.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	1.62	0.5	7.99	2.41	6.14	6.59	3.65	12.39	1.38	0.0	6.03	1.25
Merged-chr9-106769965-1	chr9	106769865	106770065	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030730, intron 1 of 21)	intron (NM_030730, intron 1 of 21)	19248.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	1.62	6.79	1.71	5.63	1.64	5.96	1.33	6.45	6.88	3.01	7.03	4.7
Merged-chr17-27857811-2	chr17	27857687	27857887	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	1280.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	4.44	3.27	2.28	8.85	6.95	4.39	7.31	5.1	3.93	12.05	7.03	5.33
Merged-chr13-112447304-1	chr13	112447204	112447404	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16766.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	11.31	7.55	10.27	14.08	0.0	1.25	1.99	0.48	0.98	0.0	1.0	1.25
Merged-chr6-98997903-3	chr6	98997806	98998006	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	30392.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.27	5.28	7.42	11.26	4.5	5.64	9.97	10.71	1.97	7.03	10.05	6.89
Merged-chr3-69908237-1	chr3	69908137	69908337	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48343.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	2.02	2.01	1.14	4.83	4.09	4.7	4.65	6.03	7.47	4.52	5.53	3.76
Merged-chr5-105155756-1	chr5	105155656	105155856	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16170.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	2.83	3.52	6.85	4.42	5.73	2.51	1.0	2.02	8.26	8.54	5.53	11.9
Merged-chr12-59195371-1	chr12	59195271	59195471	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24112.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	3.23	4.53	0.0	1.61	1.64	4.7	0.66	6.06	6.69	0.0	4.52	5.95
Merged-chr2-154773198-1	chr2	154773098	154773298	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LTR40c|LTR|ERVL	-17912.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	8.48	11.32	10.84	3.22	4.91	14.74	4.65	2.36	9.44	12.55	8.04	1.25
Merged-chr5-66125110-1	chr5	66125010	66125210	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	ID4|SINE|ID	25868.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.85	6.54	7.42	3.22	12.27	8.15	4.98	8.16	5.7	2.01	2.01	2.19
Merged-chr6-129514413-1	chr6	129514313	129514513	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	1856.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	4.44	2.77	4.56	4.83	4.91	11.29	5.31	6.0	5.31	10.54	9.55	3.13
Merged-chr19-12591127-2	chr19	12591022	12591222	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	5444.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	5.25	12.32	5.13	5.63	3.68	10.03	7.31	4.26	18.49	10.54	31.15	15.98
Merged-chr12-71821398-2	chr12	71821270	71821470	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-9698.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	2.83	4.02	1.14	4.42	3.27	9.72	4.98	5.61	8.85	3.01	7.03	4.07
Merged-chr16-91548849-1	chr16	91548749	91548949	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	B3|SINE|B2	1755.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	2.42	4.02	1.71	2.01	6.95	6.9	2.99	6.14	5.9	3.51	6.03	3.13
Merged-chr15-42463498-2	chr15	42463392	42463592	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286062, intron 6 of 8)	intron (NM_001286062, intron 6 of 8)	213485.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	4.85	7.04	6.85	4.42	9.82	5.64	9.63	15.06	7.67	4.02	13.06	5.95
Merged-chr18-84439042-1	chr18	84438942	84439142	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	150462.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	4.04	2.01	5.7	6.84	8.59	5.33	9.3	6.87	2.56	7.03	8.54	7.52
Merged-chrX-36311629-2	chrX	36311540	36311740	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-16769.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	2.42	0.0	3.42	6.84	2.05	6.27	7.97	9.0	3.34	4.52	11.05	7.21
Merged-chr2-73492137-1	chr2	73492037	73492237	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	Lx7|LINE|L1	-6384.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.27	4.53	6.28	4.02	3.68	6.9	5.98	3.7	11.6	12.05	7.03	7.52
Merged-chr7-137414962-1	chr7	137414862	137415062	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-4206.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.81	0.25	7.42	0.0	9.41	19.13	2.99	2.1	2.56	1.0	3.52	2.19
Merged-chr16-90830600-3	chr16	90830516	90830716	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-243.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	7.27	5.79	1.14	6.03	7.36	7.53	11.29	2.97	7.47	4.02	6.03	9.71
Merged-chr7-25251483-3	chr7	25251392	25251592	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-734.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	4.85	6.04	2.28	6.44	5.32	2.51	7.97	5.07	9.64	7.03	6.03	9.08
Merged-chr8-122575326-1	chr8	122575226	122575426	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009698, intron 3 of 4)	intron (NM_009698, intron 3 of 4)	1581.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	3.63	6.04	7.42	2.01	3.27	7.84	6.31	2.19	3.34	0.5	5.53	5.95
Merged-chr11-117655114-1	chr11	117655014	117655214	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	CpG	825.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	3.63	5.03	4.56	1.21	10.23	7.53	13.95	3.76	10.23	12.55	10.55	2.82
Merged-chr4-123305997-2	chr4	123305899	123306099	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17680.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	5.65	10.82	2.28	2.41	2.45	12.23	14.28	6.06	9.44	14.06	12.56	10.02
Merged-chr3-116120554-1	chr3	116120454	116120654	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	9134.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.44	2.26	0.0	1.61	3.27	5.96	0.66	1.63	1.97	3.51	1.0	1.57
Merged-chr13-59556943-1	chr13	59556843	59557043	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001284219)	promoter-TSS (NM_001284219)	-21.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	6.86	9.31	11.41	4.42	3.27	2.2	9.63	10.43	7.28	4.02	9.55	5.33
Merged-chr12-33057447-2	chr12	33057346	33057546	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024478, intron 8 of 19)	intron (NM_001024478, intron 8 of 19)	35429.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	8.88	8.3	3.99	3.22	11.05	15.37	2.66	8.44	6.88	3.51	4.52	5.01
Merged-chr11-72466466-3	chr11	72466374	72466574	+	710.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	8553.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	10.09	6.04	14.26	10.05	7.77	22.26	4.32	9.64	10.03	13.05	20.1	5.95
Merged-chr3-108070480-3	chr3	108070390	108070590	+	710.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14912.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	6.46	6.29	5.13	4.42	4.09	7.53	2.33	6.87	11.6	9.04	14.07	9.4
Merged-chr7-92977597-3	chr7	92977480	92977680	+	710.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102299.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	12.92	6.29	9.13	8.04	10.23	5.96	8.64	15.34	10.23	8.03	11.05	10.02
Merged-chr7-35137710-3	chr7	35137603	35137803	+	710.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18410.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	7.67	7.29	12.55	5.63	16.77	7.53	4.32	10.93	7.47	8.54	16.58	7.52
Merged-chr2-165956504-3	chr2	165956390	165956590	+	710.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36147.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.46	9.06	14.83	8.04	9.41	5.02	11.29	14.86	19.67	12.05	15.58	12.84
Merged-chr4-132838280-3	chr4	132838151	132838351	+	710.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	4883.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	10.9	6.54	13.12	10.86	15.14	6.59	10.63	13.93	9.64	4.02	6.53	12.22
Merged-chr11-94486195-2	chr11	94486101	94486301	+	710.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144827)	promoter-TSS (NM_144827)	-891.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	11.31	7.8	3.42	5.23	8.59	12.23	6.31	7.77	3.15	17.57	14.57	6.27
Merged-chr12-80815627-3	chr12	80815504	80815704	+	710.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25072.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	11.31	6.04	11.41	8.45	8.59	10.66	4.32	6.34	12.59	1.51	5.53	7.52
Merged-chr2-129308577-2	chr2	129308477	129308677	+	710.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040371)	TTS (NR_040371)	1395.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	11.31	6.79	9.7	5.23	6.95	16.93	1.66	2.58	6.1	13.56	5.53	5.01
Merged-chr3-96293471-2	chr3	96293362	96293562	+	710.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	507.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	6.86	3.27	11.41	9.65	10.64	5.02	8.97	9.34	5.7	4.02	11.56	6.27
Merged-chr2-118537437-3	chr2	118537328	118537528	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7159.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.27	7.8	1.71	2.01	9.41	9.41	7.31	6.7	12.39	12.05	13.06	6.27
Merged-chr7-4513419-3	chr7	4513290	4513490	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360154, intron 4 of 12)	intron (NM_001360154, intron 4 of 12)	2585.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	20.59	6.04	6.85	10.46	9.41	16.62	4.32	7.07	12.78	10.54	11.56	6.27
Merged-chr1-131613526-3	chr1	131613421	131613621	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14407.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	10.09	10.06	6.28	7.64	5.32	7.53	3.32	7.21	18.1	13.05	16.08	5.95
Merged-chr13-107873323-1	chr13	107873223	107873423	+	710.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	16741.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	3.23	2.01	4.56	8.45	9.82	6.9	6.98	6.81	5.11	5.02	4.52	4.07
Merged-chr1-132343820-3	chr1	132343732	132343932	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24116.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	10.09	8.05	6.85	8.45	5.73	13.17	7.64	6.25	14.95	2.51	10.05	9.71
Merged-chr11-116586970-3	chr11	116586871	116587071	+	710.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5524.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	19.38	7.55	7.42	6.03	10.23	26.65	3.32	6.73	24.39	19.58	11.56	11.59
Merged-chr7-132776629-1	chr7	132776529	132776729	+	710.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	287.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	9.13	1.61	13.09	11.92	5.31	5.78	1.38	1.51	0.5	0.0
Merged-chr19-41264802-3	chr19	41264651	41264851	+	710.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-747.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.27	7.04	8.56	6.03	8.59	3.76	5.31	6.56	12.39	7.53	10.55	6.58
Merged-chr6-46961498-3	chr6	46961374	46961574	+	710.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-282922.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.83	3.77	3.99	4.42	4.09	3.76	2.66	8.33	11.8	9.54	11.05	6.89
Merged-chr10-99166182-3	chr10	99166055	99166255	+	710.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58020.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	12.52	10.56	6.85	3.22	14.32	12.86	4.98	14.44	6.88	7.03	11.05	15.35
Merged-chr17-32349128-2	chr17	32349026	32349226	+	710.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017476, intron 1 of 13)	MER20|DNA|hAT-Charlie	1451.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	7.27	4.02	10.84	4.83	4.5	6.59	2.99	7.65	12.39	15.06	7.54	7.52
Merged-chr6-47354271-2	chr6	47354157	47354357	+	710.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99475.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	6.86	6.54	10.84	11.66	6.95	1.25	8.3	7.91	2.56	1.0	4.52	3.13
Merged-chr6-73010204-2	chr6	73010106	73010306	+	710.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51458.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	6.46	7.29	10.27	6.84	7.36	5.02	7.64	9.64	8.46	9.04	10.05	8.14
Merged-chr4-141625545-3	chr4	141625460	141625660	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033150)	TTS (NM_001033150)	-1726.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	10.5	4.78	6.85	14.48	10.23	5.02	5.31	7.07	10.03	9.04	10.55	8.14
Merged-chr18-65272321-1	chr18	65272221	65272421	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 12 of 12)	intron (NM_001037294, intron 12 of 12)	23460.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	2.83	6.04	9.7	5.23	5.32	7.21	7.31	6.28	5.11	6.03	3.01	5.33
Merged-chr11-3428983-1	chr11	3428883	3429083	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110959, intron 1 of 5)	intron (NR_110959, intron 1 of 5)	-19745.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.23	4.02	2.28	6.03	8.59	6.27	5.65	7.77	3.74	8.03	5.53	4.07
Merged-chr7-75370691-1	chr7	75370591	75370791	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61429.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.04	5.53	7.42	3.62	6.55	10.35	5.65	4.91	1.57	1.0	2.01	1.88
Merged-chr15-12214603-3	chr15	12214548	12214748	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	9620.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	6.86	9.06	5.7	9.65	6.95	7.84	7.97	12.84	12.39	9.54	5.02	4.7
Merged-chrX-18239788-3	chrX	18239692	18239892	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310444, intron 9 of 28)	ORR1D2|LTR|ERVL-MaLR	77217.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	10.09	10.31	11.41	23.73	9.0	10.98	3.99	14.92	8.65	5.52	11.56	6.27
Merged-chr6-125516126-3	chr6	125516011	125516211	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21351.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	6.06	6.54	14.83	7.24	1.23	5.02	10.3	8.02	7.47	5.52	3.52	6.27
Merged-chr3-108018583-1	chr3	108018483	108018683	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-610.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	5.65	7.8	2.85	5.63	8.18	10.66	4.98	4.91	3.74	9.04	3.52	6.89
Merged-chr7-48973023-1	chr7	48972923	48973123	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	13950.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	10.5	9.31	7.99	9.25	5.32	5.64	4.32	8.72	2.75	5.52	6.03	3.76
Merged-chr2-122126354-2	chr2	122126255	122126455	+	710.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 7 of 17)	intron (NM_026251, intron 7 of 17)	-7969.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	4.44	3.77	5.7	3.62	11.45	6.9	8.64	10.51	9.05	5.02	7.54	8.46
Merged-chr17-37618269-3	chr17	37618163	37618363	+	710.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	6370.0	NM_146632	258625.0	Mm.377599	NM_146632	ENSMUSG00000061336	Olfr116	MOR218-2	olfactory receptor 116	protein-coding	10.9	9.31	11.41	22.93	13.5	5.96	5.98	12.28	7.67	2.01	10.05	5.95
Merged-chr10-96132339-3	chr10	96132227	96132427	+	710.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93880.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.04	7.8	11.98	4.83	5.73	5.02	4.32	9.62	13.18	10.04	14.57	12.53
Merged-chr11-44401975-3	chr11	44401863	44402063	+	710.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303244, intron 1 of 7)	intron (NM_001303244, intron 1 of 7)	1900.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	13.33	7.29	5.7	6.44	8.59	13.17	9.63	7.99	11.21	5.02	16.58	4.7
Merged-chr8-84012554-3	chr8	84012405	84012605	+	710.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-785.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	5.25	9.56	6.28	4.83	6.95	7.53	7.31	10.37	7.28	6.53	8.54	8.14
Merged-chr5-140332275-3	chr5	140332169	140332369	+	710.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	313.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	10.9	7.55	9.7	2.41	7.77	17.87	4.65	9.08	11.01	10.04	9.04	2.82
Merged-chr2-53668813-3	chr2	53668713	53668913	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	416739.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	6.46	3.02	11.41	8.04	13.5	12.54	14.95	25.18	8.06	9.54	16.58	6.27
Merged-chr14-75149484-1	chr14	75149384	75149584	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	13059.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	3.27	3.42	4.42	3.27	7.53	4.32	7.99	7.08	10.04	14.07	2.82
Merged-chr9-22230751-2	chr9	22230646	22230846	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028420, intron 1 of 4)	B2_Mm2|SINE|B2	5034.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	5.25	4.53	3.42	3.22	6.55	7.53	4.32	8.19	15.93	11.55	8.04	7.52
Merged-chr8-46078867-2	chr8	46078738	46078938	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207213, intron 5 of 17)	intron (NM_207213, intron 5 of 17)	45308.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	2.02	2.77	4.56	4.02	3.68	4.08	8.64	4.63	4.92	2.01	5.02	4.7
Merged-chr7-125603527-1	chr7	125603427	125603627	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	98.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.63	9.06	13.12	11.26	1.23	2.51	1.0	2.44	4.33	3.51	4.52	4.7
Merged-chrX-103557306-1	chrX	103557206	103557406	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11806.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	3.63	4.53	10.27	3.22	2.45	5.64	4.65	6.98	4.33	1.0	6.03	0.63
Merged-chr1-78895475-2	chr1	78895382	78895582	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	78571.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	9.69	9.56	3.42	5.23	10.23	5.64	5.65	3.9	8.26	0.5	4.02	1.88
Merged-chr6-101555869-2	chr6	101555781	101555981	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177984.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	4.04	4.02	0.0	3.62	9.0	9.09	2.99	3.9	13.77	12.55	3.01	6.27
Merged-chr4-12498601-2	chr4	12498512	12498712	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-326597.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	10.09	7.29	7.42	19.31	8.18	2.2	5.31	6.2	3.15	4.02	3.01	3.76
Merged-chr2-30442707-1	chr2	30442607	30442807	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	26657.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	3.63	2.01	1.71	7.64	11.86	8.47	4.65	6.67	10.23	6.53	17.08	4.7
Merged-chrX-71228414-1	chrX	71228314	71228514	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 1 of 15)	RMER15|LTR|ERVL	13340.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	2.42	0.5	2.85	0.4	8.18	10.98	3.99	5.83	4.72	3.51	8.54	5.01
Merged-chr3-89910163-2	chr3	89910040	89910240	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3056.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	6.06	2.77	11.41	2.41	9.82	4.7	4.65	8.13	7.87	7.03	7.54	8.14
Merged-chr11-83663180-2	chr11	83663077	83663277	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013652, intron 1 of 2)	B2_Mm2|SINE|B2	593.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	9.69	12.58	10.84	13.67	7.77	15.68	8.64	1.68	15.93	7.53	4.02	3.76
Merged-chr4-46126660-2	chr4	46126562	46126762	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355375, intron 4 of 9)	intron (NM_001355375, intron 4 of 9)	11813.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	6.46	8.55	3.42	6.03	10.23	7.21	3.99	12.56	4.13	10.54	10.55	5.33
Merged-chr17-63198856-3	chr17	63198754	63198954	+	710.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	114119.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	11.71	5.53	9.7	15.69	10.64	7.84	10.96	16.09	12.98	8.03	11.05	6.27
Merged-chr13-119309421-2	chr13	119309337	119309537	+	710.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	99574.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.65	2.52	5.13	2.41	3.68	8.15	5.65	10.12	7.87	11.05	13.06	6.89
Merged-chr12-32146658-2	chr12	32146555	32146755	+	710.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61683.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	1.62	1.76	7.99	6.84	6.55	4.7	6.64	12.28	7.87	14.56	9.55	11.28
Merged-chr4-34430850-2	chr4	34430741	34430941	+	710.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119774.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	4.85	6.54	9.13	31.37	9.82	7.21	8.3	17.22	6.88	3.01	4.02	5.01
Merged-chr10-128519044-3	chr10	128518934	128519134	+	710.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011843, intron 14 of 30)	intron (NM_011843, intron 14 of 30)	6825.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	13.33	5.79	7.42	7.24	6.55	2.2	3.99	6.2	10.03	15.06	10.05	13.16
Merged-chr10-14209583-2	chr10	14209493	14209693	+	710.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243214.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.06	2.52	11.98	7.24	16.36	7.84	7.64	12.31	8.26	2.51	12.56	6.27
Merged-chr2-101982213-2	chr2	101982090	101982290	+	710.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	95928.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.0	1.26	2.28	4.83	3.68	2.51	4.65	5.64	9.64	2.51	11.56	10.02
Merged-chr8-109780704-3	chr8	109780600	109780800	+	710.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	2117.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	6.86	8.05	10.27	4.83	7.36	6.27	9.63	10.74	7.28	10.54	8.54	9.08
Merged-chr7-48923822-1	chr7	48923722	48923922	+	710.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35251.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	7.27	3.02	1.14	7.64	7.77	5.02	8.97	7.37	4.52	0.5	5.53	6.27
Merged-chr8-13640457-1	chr8	13640357	13640557	+	710.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	37130.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.23	5.03	0.57	1.21	8.18	10.03	5.31	7.74	6.88	3.51	5.53	5.01
Merged-chr12-99645240-1	chr12	99645140	99645340	+	710.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17266.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	21.0	24.4	12.55	12.07	16.36	7.53	11.29	0.36	10.82	7.03	7.54	17.23
Merged-chr7-16228297-1	chr7	16228197	16228397	+	710.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-6265.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	4.04	6.54	0.0	2.41	6.14	8.15	5.31	8.1	4.13	5.02	4.02	2.51
Merged-chr2-142858959-3	chr2	142858848	142859048	+	710.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42516.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.25	7.29	15.4	11.66	9.41	3.45	10.63	17.05	4.72	5.02	11.05	7.52
Merged-chr4-120381216-3	chr4	120381111	120381311	+	710.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24070.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	15.75	8.3	7.42	10.05	4.5	14.42	3.65	7.77	10.82	12.05	16.08	7.83
Merged-chr6-5508030-3	chr6	5507883	5508083	+	710.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-11705.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	4.44	2.77	3.42	15.28	5.73	4.39	26.91	29.64	9.83	8.54	16.58	9.08
Merged-chr3-58502109-3	chr3	58502025	58502225	+	710.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23696.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.46	8.3	9.7	8.04	11.45	13.48	8.97	15.98	8.65	5.02	14.07	7.83
Merged-chr2-155044705-2	chr2	155044617	155044817	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015770, intron 1 of 3)	MTD|LTR|ERVL-MaLR	29780.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.46	11.07	3.42	2.41	4.5	15.37	5.65	7.21	12.39	3.51	9.55	6.27
Merged-chr1-151615842-3	chr1	151615736	151615936	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	44463.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.27	5.79	10.84	9.65	8.18	14.11	8.64	5.86	17.31	16.57	13.57	4.39
Merged-chr1-152623937-1	chr1	152623837	152624037	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346118, intron 2 of 18)	LTR78B|LTR|ERV1	1280.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.63	3.27	6.85	8.04	4.91	9.09	7.31	3.34	5.11	5.02	8.54	4.07
Merged-chr6-42398405-2	chr6	42398293	42398493	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1845.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	3.23	4.53	13.69	5.63	7.36	7.84	11.29	18.84	8.46	4.52	10.05	12.22
Merged-chr17-70833672-3	chr17	70833592	70833792	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13085.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.25	8.3	9.7	10.86	6.95	13.17	8.64	6.0	9.05	12.05	9.04	10.02
Merged-chr9-69441126-2	chr9	69441036	69441236	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12547.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	4.85	3.77	1.71	2.82	7.36	1.88	6.64	9.59	7.08	7.53	12.56	6.89
Merged-chr16-33191869-1	chr16	33191769	33191969	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	6798.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	1.21	5.53	6.85	1.61	11.86	9.72	6.31	5.72	8.06	10.54	3.52	5.95
Merged-chr15-81857234-3	chr15	81857142	81857342	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	1084.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.04	6.79	7.99	4.83	8.59	8.78	5.65	6.48	9.64	12.05	6.53	12.22
Merged-chr8-95420650-2	chr8	95420590	95420790	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008187, intron 5 of 5)	intron (NM_008187, intron 5 of 5)	14179.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	4.44	8.05	1.71	10.46	6.14	7.53	2.33	4.04	5.7	4.02	6.53	2.82
Merged-chr8-72324604-6	chr8	72324575	72324775	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5613.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	9.69	6.29	5.13	11.66	11.86	9.72	7.64	6.22	5.7	7.53	3.52	4.7
Merged-chr1-151706228-3	chr1	151706134	151706334	+	710.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 11 of 13)	intron (NM_022018, intron 11 of 13)	48493.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	10.5	6.29	12.55	6.84	8.59	10.98	7.31	7.93	19.47	15.57	12.56	9.71
Merged-chr2-10049418-3	chr2	10049306	10049506	+	710.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-797.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	9.29	3.52	7.99	1.61	8.59	6.27	5.98	5.78	7.47	8.03	3.52	6.27
Merged-chr14-79503876-3	chr14	79503796	79503996	+	710.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	-11778.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.04	6.29	13.69	9.65	6.95	7.84	11.29	18.08	10.62	5.02	16.58	7.52
Merged-chr12-12313651-3	chr12	12313565	12313765	+	710.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	51526.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	8.08	3.27	6.85	7.64	6.55	12.86	1.99	8.27	10.03	8.03	4.02	4.7
Merged-chr6-108835940-3	chr6	108835832	108836032	+	710.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	RSINE1|SINE|B4	7291.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.44	10.31	9.13	1.61	8.18	5.33	1.33	5.8	10.42	11.05	11.56	2.19
Merged-chr10-130322818-2	chr10	130322716	130322916	+	710.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183264)	promoter-TSS (NM_183264)	-36.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	6.86	9.81	2.28	14.48	10.64	6.27	5.65	13.85	4.33	4.02	8.04	6.27
Merged-chr1-183657267-2	chr1	183657178	183657378	+	710.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91699.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.25	3.52	3.99	0.4	4.91	7.53	3.99	9.28	10.23	9.04	11.05	11.59
Merged-chr13-100676391-5	chr13	100676281	100676481	+	710.1400150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	6900.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	3.23	3.52	1.14	6.84	7.36	2.82	3.99	6.14	9.05	17.07	12.56	9.08
Merged-chr4-80331292-3	chr4	80331185	80331385	+	710.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-502928.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	2.42	9.81	9.13	9.25	4.91	5.96	4.65	5.44	14.75	7.53	21.1	12.53
Merged-chr16-24505257-3	chr16	24505088	24505288	+	710.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-24126.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	8.88	5.03	6.85	8.85	4.09	16.93	4.32	1.37	10.03	12.55	3.52	2.82
Merged-chr6-17307561-2	chr6	17307473	17307673	+	710.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	-67.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	5.25	7.29	8.56	13.27	8.18	8.47	13.95	6.84	5.51	5.52	12.56	4.07
Merged-chr1-64736652-3	chr1	64736530	64736730	+	710.041687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022721, exon 2 of 2)	5' UTR (NM_022721, exon 2 of 2)	1120.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	4.44	3.52	6.28	6.84	8.59	3.45	7.31	4.6	11.41	7.03	6.03	7.21
Merged-chr1-171686703-2	chr1	171686604	171686804	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	4712.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	7.27	14.09	6.85	8.45	8.18	9.41	5.31	9.25	11.8	12.05	10.55	9.4
Merged-chr3-108258045-1	chr3	108257945	108258145	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1119.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	4.85	3.52	9.7	3.62	4.91	5.33	3.99	1.43	11.6	7.03	9.55	14.72
Merged-chr10-84920003-1	chr10	84919903	84920103	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	2390.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	6.06	6.79	6.85	4.42	13.5	7.84	10.63	6.06	8.46	6.03	7.54	1.88
Merged-chr6-3475144-1	chr6	3475044	3475244	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	19354.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	3.63	1.26	5.7	2.82	8.18	4.08	2.99	6.7	1.57	2.51	3.01	2.82
Merged-chr3-129472114-1	chr3	129472014	129472214	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38441.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.81	3.02	7.99	5.63	5.32	6.27	1.33	10.68	6.49	6.53	3.52	5.01
Merged-chr6-29902494-1	chr6	29902394	29902594	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347084, intron 13 of 17)	intron (NM_001347084, intron 13 of 17)	-14519.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	3.23	4.02	9.13	10.05	3.68	3.45	7.64	6.98	8.06	6.03	5.02	1.88
Merged-chr3-105914208-2	chr3	105914098	105914298	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_027025, exon 2 of 7)	5' UTR (NM_027025, exon 2 of 7)	9777.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	14.94	4.02	10.27	6.84	6.55	3.45	1.0	7.07	2.75	0.5	3.52	1.25
Merged-chr14-40963062-1	chr14	40962962	40963162	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3834.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	1.21	0.75	2.85	2.01	0.41	2.82	2.33	2.21	0.79	1.0	1.51	0.31
Merged-chr16-42876761-1	chr16	42876661	42876861	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040522)	promoter-TSS (NR_040522)	-999.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	2.83	2.77	0.57	3.22	6.95	5.64	6.64	6.64	2.95	2.51	4.02	6.58
Merged-chr18-75501793-1	chr18	75501693	75501893	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12852.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.85	6.29	12.55	4.02	4.5	8.15	5.65	5.58	4.33	4.02	2.51	3.45
Merged-chr4-75259536-1	chr4	75259436	75259636	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18756.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.44	5.03	7.42	9.65	6.55	9.41	3.99	7.63	7.47	4.52	7.03	4.07
Merged-chr15-10920420-1	chr15	10920320	10920520	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31912.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	1.62	1.51	9.13	2.82	6.14	1.88	2.99	5.86	7.67	6.03	7.54	1.88
Merged-chr14-59397165-1	chr14	59397065	59397265	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001320725, intron 14 of 23)	intron (NM_001320725, intron 14 of 23)	-3653.0	NM_001164289	628705.0	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	3.63	4.02	2.85	0.0	3.27	6.27	1.99	7.88	3.93	12.05	6.53	5.95
Merged-chr19-12814025-1	chr19	12813925	12814125	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	15446.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	5.65	4.02	0.0	10.05	1.64	7.53	1.66	7.91	1.97	6.53	4.52	0.63
Merged-chr16-57548160-1	chr16	57548060	57548260	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1082.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.63	0.75	1.14	2.82	6.14	6.9	1.66	6.98	1.77	1.0	4.02	3.45
Merged-chr8-79028768-1	chr8	79028668	79028868	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	331.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.23	4.53	1.71	4.83	6.55	8.15	3.65	5.83	1.97	4.52	2.51	0.0
Merged-chr8-86880374-2	chr8	86880283	86880483	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	4875.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	12.92	10.31	2.28	4.02	9.41	14.42	6.98	6.9	7.67	12.55	8.04	5.01
Merged-chr10-70183387-2	chr10	70183270	70183470	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111121, intron 7 of 8)	intron (NM_001111121, intron 7 of 8)	-21294.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.85	1.76	9.7	8.85	14.73	5.33	3.99	7.21	4.92	1.51	5.02	2.19
Merged-chr13-90062080-1	chr13	90061980	90062180	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_028012, exon 3 of 8)	exon (NM_028012, exon 3 of 8)	27528.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	4.04	4.02	15.4	13.27	10.64	5.02	1.0	5.07	5.51	12.05	6.03	4.39
Merged-chr19-10848344-1	chr19	10848244	10848444	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	5800.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	3.23	1.51	0.0	1.61	2.86	9.09	2.33	3.08	1.57	3.51	0.5	4.39
Merged-chr6-65588980-1	chr6	65588880	65589080	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1418.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	3.63	4.53	11.98	4.83	1.64	9.09	3.65	5.58	4.33	10.04	5.53	3.76
Merged-chr6-49973706-1	chr6	49973606	49973806	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136535.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.86	2.52	4.56	3.22	3.68	5.96	4.65	7.35	5.51	4.02	3.01	1.57
Merged-chr18-84313720-1	chr18	84313620	84313820	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	225562.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	1.62	6.54	6.85	4.02	2.86	6.59	2.33	1.68	14.95	12.05	11.05	7.83
Merged-chr3-133094926-1	chr3	133094826	133095026	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2887.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	1.62	0.25	6.28	2.41	2.45	5.33	3.32	5.78	3.34	2.51	4.52	1.57
Merged-chr14-18237175-2	chr14	18237026	18237226	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	1980.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	2.42	3.02	0.57	1.21	2.05	2.2	2.33	3.48	5.31	8.54	0.5	4.7
Merged-chr8-120821082-1	chr8	120820982	120821182	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82443.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.63	6.04	2.28	2.41	4.91	1.88	6.98	6.84	2.75	2.51	1.0	0.63
Merged-chr6-116669764-1	chr6	116669664	116669864	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4072.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.06	16.6	6.28	5.23	4.5	3.45	5.98	1.88	12.0	13.56	10.05	6.27
Merged-chr10-88732501-1	chr10	88732401	88732601	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025859, intron 1 of 5)	intron (NM_025859, intron 1 of 5)	1087.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	4.04	4.53	2.28	6.44	2.05	6.9	1.99	5.64	1.97	2.51	5.02	2.51
Merged-chr3-101552803-1	chr3	101552703	101552903	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	51904.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	5.25	1.01	5.7	4.42	3.68	11.6	4.65	5.41	7.28	5.52	7.03	1.57
Merged-chr6-47812681-1	chr6	47812581	47812781	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009787, intron 1 of 9)	intron (NM_009787, intron 1 of 9)	831.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	5.65	2.77	9.7	2.41	5.32	6.27	3.32	5.5	4.33	2.01	5.02	4.07
Merged-chr10-68147054-1	chr10	68146954	68147154	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	131672.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.23	2.01	4.56	4.83	1.23	2.82	5.31	3.56	3.74	3.01	2.51	3.13
Merged-chr1-135486529-1	chr1	135486429	135486629	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-31846.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	5.25	7.8	6.28	8.85	0.0	1.25	0.0	0.45	1.77	0.0	1.0	0.0
Merged-chr10-127617501-1	chr10	127617401	127617601	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	3647.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.81	3.52	1.14	1.61	10.64	1.57	8.64	4.65	2.56	1.0	1.51	4.7
Merged-chr5-32195458-1	chr5	32195358	32195558	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-37250.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	5.65	1.51	0.0	2.82	2.86	6.59	2.66	4.46	5.9	2.01	2.01	3.45
Merged-chr10-42436971-1	chr10	42436871	42437071	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359297, intron 2 of 11)	intron (NM_001359297, intron 2 of 11)	41594.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	2.83	4.02	1.14	3.22	8.18	1.88	3.65	5.47	7.67	0.5	0.5	4.39
Merged-chr13-95325781-1	chr13	95325681	95325881	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302539)	promoter-TSS (NM_001302539)	956.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	6.06	3.52	6.85	5.63	5.73	8.78	2.33	5.38	9.64	12.05	8.04	10.96
Merged-chr4-107252850-1	chr4	107252750	107252950	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355460)	promoter-TSS (NM_001355460)	683.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	4.85	5.03	9.13	0.8	6.14	10.35	3.99	5.13	2.56	7.53	7.03	1.57
Merged-chr5-99227787-2	chr5	99227723	99227923	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	25104.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.04	4.28	0.0	4.83	7.36	8.78	3.32	2.36	9.64	12.55	7.54	3.45
Merged-chr1-161512339-3	chr1	161512230	161512430	+	709.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	17673.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	10.09	6.04	8.56	10.05	17.59	11.6	7.64	18.17	7.08	15.06	25.12	5.95
Merged-chr13-6471840-3	chr13	6471743	6471943	+	709.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76314.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	12.11	2.52	16.54	3.22	14.32	6.27	2.66	8.47	10.42	9.54	18.59	5.64
Merged-chr9-95511300-3	chr9	95511213	95511413	+	709.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357977, intron 1 of 25)	CpG	683.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	6.06	7.55	2.85	8.85	8.59	4.39	13.29	5.61	12.39	12.55	18.59	12.53
Merged-chr13-34193544-2	chr13	34193439	34193639	+	709.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 7 of 10)	intron (NM_001033167, intron 7 of 10)	30575.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	8.88	5.53	11.98	2.82	6.95	10.35	12.29	10.21	7.47	11.05	21.1	10.65
Merged-chr7-134669024-2	chr7	134668868	134669068	+	709.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1719.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	1.62	5.79	3.42	8.85	3.27	8.47	3.32	3.34	3.15	4.02	6.53	1.88
Merged-chr18-82567849-3	chr18	82567750	82567950	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	13342.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	5.65	10.06	11.98	7.64	9.0	10.66	10.63	7.54	9.64	12.55	13.06	10.65
Merged-chr5-24452488-3	chr5	24452375	24452575	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139153, exon 1 of 18)	exon (NM_139153, exon 1 of 18)	298.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	7.27	9.06	5.7	9.25	11.45	4.39	4.98	5.75	10.42	8.54	5.02	8.46
Merged-chr11-105347984-3	chr11	105347865	105348065	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008626, exon 26 of 30)	exon (NM_008626, exon 26 of 30)	55319.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	10.09	6.79	7.42	4.02	2.86	7.84	0.66	9.73	10.23	16.07	13.57	9.4
Merged-chr4-88412560-3	chr4	88412467	88412667	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025760)	TTS (NM_025760)	26359.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	8.08	6.29	5.7	13.67	6.95	6.27	6.64	15.36	9.05	8.03	21.61	12.84
Merged-chr5-139449287-3	chr5	139449177	139449377	+	709.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	11257.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	1.62	2.52	13.69	11.26	9.0	3.76	6.64	15.31	10.42	10.04	12.06	10.34
Merged-chr10-62488476-2	chr10	62488372	62488572	+	709.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1667.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	17.36	5.03	10.27	7.24	10.23	10.35	3.99	6.53	9.83	12.05	13.06	4.7
Merged-chr2-160647692-2	chr2	160647598	160647798	+	709.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	1801.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	9.69	6.04	11.98	4.83	6.55	8.78	12.29	10.85	6.1	6.53	13.06	7.21
Merged-chr8-119831634-5	chr8	119831515	119831715	+	709.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8964.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	9.29	3.77	3.99	4.42	9.82	16.31	3.32	4.26	5.11	11.55	7.54	6.58
Merged-chr2-122450483-2	chr2	122450394	122450594	+	709.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356532, intron 6 of 17)	MTC|LTR|ERVL-MaLR	9674.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	7.27	3.27	1.14	6.84	8.59	10.35	6.64	9.48	9.44	7.53	9.55	15.04
Merged-chr7-4811742-3	chr7	4811669	4811869	+	709.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133777, intron 1 of 3)	CpG	571.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	10.5	8.05	1.14	6.44	5.32	1.88	6.31	1.26	9.83	5.52	8.54	3.13
Merged-chr14-51132596-1	chr14	51132496	51132696	+	709.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360117)	TTS (NM_001360117)	3532.0	NR_153407	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.0	0.5	1.14	0.0	0.82	3.76	1.99	0.48	10.42	9.04	12.56	9.4
Merged-chr14-25607462-1	chr14	25607362	25607562	+	709.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	CpG	3949.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	5.25	6.29	0.57	6.03	8.18	9.09	6.64	5.33	7.67	4.52	2.51	4.7
Merged-chr11-108235514-2	chr11	108235414	108235614	+	709.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	108374.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.23	5.03	5.7	6.44	9.82	13.17	6.98	10.09	6.1	10.54	6.53	12.22
Merged-chr7-113308920-1	chr7	113308820	113309020	+	709.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357070, intron 18 of 19)	(TG)n|Simple_repeat|Simple_repeat	60419.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	3.63	1.01	6.85	11.26	8.59	6.9	7.31	6.81	12.39	6.03	8.04	5.01
Merged-chr15-59064134-2	chr15	59064030	59064230	+	709.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	17896.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	2.02	0.0	5.7	2.82	10.64	10.98	6.31	10.15	9.83	6.03	8.54	2.82
Merged-chr8-56896148-1	chr8	56896048	56896248	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	345014.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.04	6.54	6.85	6.44	13.91	5.64	7.31	6.06	3.15	7.53	1.0	2.51
Merged-chr4-125102886-3	chr4	125102837	125103037	+	709.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290701, exon 5 of 7)	exon (NM_001290701, exon 5 of 7)	17803.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	9.29	4.78	13.12	9.25	8.59	5.33	9.3	11.1	5.9	6.53	13.57	4.39
Merged-chr16-3239511-1	chr16	3239411	3239611	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-352887.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.23	5.53	1.14	2.41	7.36	6.27	8.3	3.36	1.38	2.01	2.51	0.94
Merged-chr8-31135777-1	chr8	31135677	31135877	+	709.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14539.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	0.81	0.0	2.28	0.0	0.0	5.02	0.33	1.82	6.88	7.03	26.13	6.89
Merged-chr10-126928871-1	chr10	126928771	126928971	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27500.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	1.21	1.26	2.28	3.62	3.27	3.45	3.65	5.33	5.7	4.52	3.52	2.19
Merged-chr1-152592632-1	chr1	152592532	152592732	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	LTR48|LTR|ERV1	32585.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.48	3.52	4.56	4.02	6.14	5.33	2.66	6.87	2.56	9.04	6.03	1.25
Merged-chr11-49157576-1	chr11	49157476	49157676	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2440.0	NM_146276	258273.0	Mm.377407	NM_146276	ENSMUSG00000048378	Olfr1394	MOR280-1	olfactory receptor 1394	protein-coding	5.65	5.79	7.42	1.61	6.14	4.7	5.31	7.49	10.03	10.54	5.02	1.88
Merged-chr2-91495454-3	chr2	91495346	91495546	+	709.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 28 of 37)	intron (NM_172668, intron 28 of 37)	-31316.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.44	8.3	14.83	7.24	6.14	8.15	3.32	6.2	12.98	7.03	12.06	4.07
Merged-chr8-123406981-3	chr8	123406894	123407094	+	709.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008559)	promoter-TSS (NM_008559)	-88.0	NM_008559	17199.0	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	7.27	7.8	4.56	5.23	9.41	14.42	3.65	2.5	14.95	19.58	8.54	8.46
Merged-chr3-31089199-2	chr3	31089071	31089271	+	709.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5887.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.85	4.02	2.85	2.01	4.09	0.0	1.99	6.28	8.65	2.51	9.55	6.89
Merged-chr17-81750267-2	chr17	81750157	81750357	+	709.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11870.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.85	3.02	7.99	0.4	9.0	4.39	2.66	6.95	4.33	14.06	17.08	11.9
Merged-chr14-54391117-2	chr14	54391044	54391244	+	709.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	L1_Mur3|LINE|L1	18328.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.21	6.29	0.57	5.63	6.55	1.57	19.93	24.48	0.39	1.51	0.0	0.0
Merged-chr3-87015745-2	chr3	87015655	87015855	+	709.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-16415.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	6.46	5.79	12.55	10.86	5.32	7.84	10.63	12.34	7.28	8.03	11.05	5.95
Merged-chr18-68119936-2	chr18	68119810	68120010	+	709.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	RMER19B|LTR|ERVK	-108036.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.23	1.01	0.0	2.41	4.91	7.53	3.99	8.72	8.85	8.03	6.53	1.57
Merged-chr11-95821654-2	chr11	95821536	95821736	+	709.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-2864.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	6.86	2.26	4.56	6.03	5.32	6.9	3.32	5.89	7.47	9.04	6.03	7.21
Merged-chr6-47317395-3	chr6	47317275	47317475	+	709.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	72979.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	6.06	7.29	7.99	9.65	8.59	14.11	17.27	14.86	8.65	5.02	2.01	4.7
Merged-chr17-83253271-3	chr17	83253165	83253365	+	709.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37982.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	7.67	7.8	10.84	5.63	12.27	5.96	5.98	7.91	12.98	4.52	7.54	7.21
Merged-chr9-95853103-3	chr9	95853001	95853201	+	709.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4416.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	6.46	6.29	7.99	5.63	9.0	12.23	4.98	7.12	13.96	10.54	11.05	10.02
Merged-chr8-119836117-1	chr8	119836017	119836217	+	709.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	4462.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.85	7.04	3.42	4.02	3.27	2.2	0.66	3.2	4.72	4.52	1.0	5.33
Merged-chr5-143471755-2	chr5	143471664	143471864	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7271.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.23	5.28	2.28	1.61	2.45	11.6	2.99	5.5	8.26	7.53	7.03	3.45
Merged-chr11-44410679-2	chr11	44410578	44410778	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303244, intron 5 of 7)	intron (NM_001303244, intron 5 of 7)	10615.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.86	1.76	10.27	4.02	0.0	6.9	7.64	5.38	14.95	8.03	18.59	7.21
Merged-chr14-54786107-2	chr14	54786005	54786205	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4219.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.44	9.06	2.28	3.22	7.77	10.03	1.99	6.67	15.34	12.05	20.1	3.45
Merged-chr6-116461144-1	chr6	116461044	116461244	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009662)	promoter-TSS (NM_009662)	34.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	8.08	6.54	5.13	7.24	11.05	6.59	4.98	9.11	4.72	3.01	6.53	7.83
Merged-chr14-73408455-1	chr14	73408355	73408555	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-23166.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.65	3.27	9.13	4.02	8.18	1.88	4.65	9.25	3.15	2.01	5.53	3.13
Merged-chr13-8867552-2	chr13	8867461	8867661	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 1 of 13)	URR1B|DNA|hAT-Charlie	3483.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	2.02	3.52	3.42	1.61	2.45	4.39	5.31	5.94	12.98	14.56	11.56	5.64
Merged-chr12-8682202-2	chr12	8682103	8682303	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030723, intron 1 of 20)	MTC|LTR|ERVL-MaLR	7522.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.04	5.53	7.99	5.63	6.95	10.98	7.31	4.77	10.82	24.1	16.58	5.33
Merged-chr1-173739704-2	chr1	173739648	173739848	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2061.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	5.65	6.79	0.0	3.22	1.64	0.0	1.33	1.71	9.83	11.05	6.53	7.21
Merged-chr7-43798056-2	chr7	43797962	43798162	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008940, exon 1 of 5)	5' UTR (NM_008940, exon 1 of 5)	485.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	5.65	2.77	9.13	10.46	6.55	10.98	2.66	11.75	8.65	8.03	17.59	8.14
Merged-chr15-73742078-2	chr15	73741988	73742188	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-5938.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.44	6.79	6.85	5.23	6.95	16.31	2.33	8.64	8.46	2.51	14.07	6.27
Merged-chr7-97076748-1	chr7	97076648	97076848	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5003.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.83	1.76	9.13	8.85	5.73	5.02	2.99	9.08	5.7	10.04	4.02	2.51
Merged-chr7-34198072-2	chr7	34197964	34198164	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1394.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	3.63	5.03	1.71	9.65	6.55	1.57	1.33	9.31	9.24	4.02	5.02	8.46
Merged-chr16-65725930-1	chr16	65725830	65726030	+	709.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-89703.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.81	0.5	0.0	3.22	0.0	0.0	0.0	0.7	3.74	7.53	1.51	2.82
Merged-chr12-12267236-2	chr12	12267146	12267346	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	5107.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	1.62	3.52	0.57	2.41	4.91	5.64	1.0	7.29	10.23	3.01	4.52	9.71
Merged-chr9-107963870-2	chr9	107963786	107963986	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011634, intron 10 of 14)	B1_Mur4|SINE|Alu	-11681.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	5.65	8.3	5.7	6.44	3.27	14.42	1.99	6.95	8.65	14.56	16.58	3.76
Merged-chr6-113663088-2	chr6	113662987	113663187	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	24620.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.06	3.27	4.56	1.61	16.77	7.21	8.64	6.81	10.82	17.07	7.54	9.4
Merged-chr7-80230489-3	chr7	80230397	80230597	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291275, intron 2 of 6)	intron (NM_001291275, intron 2 of 6)	2308.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	7.67	13.08	6.28	8.04	19.64	5.64	7.64	11.36	7.28	13.56	13.06	12.53
Merged-chr9-22649779-1	chr9	22649679	22649879	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 15 of 22)	intron (NM_001360259, intron 15 of 22)	174064.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	7.27	7.04	15.97	3.22	6.55	8.47	3.99	7.85	5.11	8.54	8.04	6.89
Merged-chr4-133585061-2	chr4	133584955	133585155	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172876)	TTS (NM_172876)	682.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	14.54	7.55	3.99	4.02	9.41	21.95	6.64	2.92	5.11	7.03	2.51	2.19
Merged-chr19-55585412-3	chr19	55585316	55585516	+	709.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116788.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.67	5.79	26.81	14.08	6.95	9.09	13.29	14.36	8.85	4.02	13.06	1.88
Merged-chr8-83089793-3	chr8	83089648	83089848	+	709.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75604.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.65	6.29	6.28	5.63	12.68	6.27	15.28	14.58	3.74	6.53	6.53	4.07
Merged-chr12-17680444-3	chr12	17680327	17680527	+	709.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10382.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.62	7.29	3.42	6.84	16.77	6.59	8.64	13.04	9.44	13.56	13.06	8.14
Merged-chr3-127754501-2	chr3	127754398	127754598	+	709.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	26029.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	11.71	10.31	15.97	12.07	4.09	5.64	6.98	15.08	0.39	0.5	0.0	2.51
Merged-chr10-59324545-3	chr10	59324454	59324654	+	709.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	1258.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	12.11	13.08	9.13	6.03	3.68	8.15	6.31	4.77	5.51	6.03	12.56	7.52
Merged-chr14-55823551-3	chr14	55823425	55823625	+	709.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1270.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	6.46	7.29	2.85	3.22	5.73	7.84	7.97	3.98	9.64	6.03	3.52	5.01
Merged-chr15-81067282-2	chr15	81067184	81067384	+	709.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	37763.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.08	7.29	4.56	10.46	5.73	4.7	5.98	8.47	7.67	3.51	7.03	5.33
Merged-chr2-129630727-2	chr2	129630634	129630834	+	709.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35272.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.42	4.28	7.99	1.61	6.55	5.02	4.98	9.56	9.05	3.51	11.05	5.01
Merged-chr10-110805204-2	chr10	110805105	110805305	+	709.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	59766.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	12.92	7.29	4.56	1.61	12.68	10.03	14.62	21.98	2.56	1.0	6.53	7.21
Merged-chr1-23975313-2	chr1	23975210	23975410	+	709.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	30330.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	2.42	4.53	5.7	5.63	0.0	6.9	4.98	6.28	11.6	10.04	9.04	5.64
Merged-chr1-195013869-1	chr1	195013769	195013969	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3530.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	14.54	12.83	7.42	8.04	3.68	1.57	4.32	4.26	3.54	1.0	2.51	0.0
Merged-chr16-92411607-1	chr16	92411507	92411707	+	709.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-11529.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.85	1.26	2.28	2.82	7.36	5.64	4.65	6.95	4.92	0.0	4.52	2.82
Merged-chr3-121629496-3	chr3	121629398	121629598	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13987.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	5.65	6.79	10.84	6.03	8.59	10.98	6.64	7.15	12.39	4.52	12.06	6.27
Merged-chr18-15265692-1	chr18	15265592	15265792	+	709.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-114246.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	1.21	1.26	0.0	4.42	6.95	7.53	5.31	7.57	0.98	5.52	13.57	6.89
Merged-chr1-37867938-3	chr1	37867867	37868067	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2669.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	9.29	10.06	20.54	8.45	6.14	9.09	5.98	6.56	3.34	5.52	13.57	5.01
Merged-chr7-63855479-3	chr7	63855397	63855597	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61360.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	9.29	8.8	2.28	4.42	10.23	6.27	2.33	7.65	11.41	6.03	10.05	6.27
Merged-chr1-182868047-3	chr1	182867995	182868195	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86693.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.46	6.04	7.42	8.85	7.77	6.59	5.65	8.8	6.49	4.52	15.07	7.21
Merged-chr14-52198348-2	chr14	52198248	52198448	+	709.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_201637, exon 37 of 37)	3' UTR (NM_201637, exon 37 of 37)	-1109.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	5.65	2.52	11.41	2.41	6.55	8.47	5.98	6.48	15.54	14.06	12.56	12.22
Merged-chr19-37546424-2	chr19	37546273	37546473	+	709.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4045.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.46	3.52	14.26	4.02	2.45	5.64	2.33	4.79	1.38	2.51	4.02	2.82
Merged-chr4-46531015-2	chr4	46530916	46531116	+	709.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029077, intron 2 of 5)	intron (NM_029077, intron 2 of 5)	-4885.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	3.23	4.53	17.11	9.65	6.14	5.64	17.61	18.84	2.16	3.01	3.52	0.63
Merged-chr13-97939040-2	chr13	97938958	97939158	+	709.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012026, intron 31 of 35)	intron (NM_012026, intron 31 of 35)	187946.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	5.65	6.54	1.71	5.23	4.09	6.27	4.32	8.72	9.05	5.52	13.06	2.51
Merged-chr4-148151269-2	chr4	148151222	148151422	+	709.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_015797, exon 1 of 6)	5' UTR (NM_015797, exon 1 of 6)	603.0	NM_001163705	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	9.29	13.83	13.12	15.28	17.18	14.42	5.31	8.13	22.23	19.58	21.61	19.74
Merged-chr7-25205949-3	chr7	25205856	25206056	+	709.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207677, intron 4 of 4)	MIRb|SINE|MIR	11769.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	10.09	6.04	1.14	10.05	12.68	14.74	9.3	15.98	8.06	8.54	9.04	7.52
Merged-chr10-81560399-3	chr10	81560292	81560492	+	709.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276288, intron 1 of 6)	intron (NM_001276288, intron 1 of 6)	948.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	8.08	7.04	2.28	13.67	3.68	8.78	11.63	8.1	6.1	10.04	10.05	7.52
Merged-chr3-136688165-2	chr3	136688071	136688271	+	709.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	18105.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	8.48	4.53	1.71	5.23	15.96	5.96	6.64	9.67	8.06	10.54	14.57	5.01
Merged-chr16-32599445-2	chr16	32599349	32599549	+	709.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9447.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	8.48	3.52	15.4	11.26	9.41	10.03	1.99	10.35	4.72	8.03	8.54	7.52
Merged-chr1-136656747-2	chr1	136656658	136656858	+	709.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26638.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.86	5.53	4.56	8.85	9.82	6.27	11.96	18.06	6.69	9.54	6.03	7.21
Merged-chr1-161552214-3	chr1	161552116	161552316	+	709.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57559.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	7.67	6.79	1.14	6.44	6.95	7.84	11.29	7.85	8.65	10.54	6.03	3.45
Merged-chr1-177191808-3	chr1	177191705	177191905	+	709.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	56962.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	9.29	7.04	9.13	10.05	9.41	5.02	5.65	12.98	11.01	10.54	12.56	4.7
Merged-chr18-63653564-2	chr18	63653464	63653664	+	709.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38795.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	6.06	9.31	10.27	4.02	6.95	7.53	3.32	8.07	8.26	16.07	9.55	5.95
Merged-chr12-111878416-3	chr12	111878288	111878488	+	709.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	intron (NM_011625, intron 1 of 16)	29667.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	16.56	6.04	6.28	9.65	15.14	16.31	3.99	7.01	8.85	11.55	16.08	8.77
Merged-chr2-93046252-3	chr2	93046155	93046355	+	709.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-111.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	9.29	2.26	9.7	14.48	12.27	11.29	6.64	12.42	13.57	12.55	8.54	12.84
Merged-chr6-72748658-3	chr6	72748536	72748736	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	40409.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	7.27	1.01	3.42	10.46	14.73	9.72	12.62	12.08	6.49	13.56	9.04	9.4
Merged-chr10-75289622-1	chr10	75289522	75289722	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-27255.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.81	3.02	1.14	3.22	3.27	10.98	3.32	5.07	11.6	4.02	5.02	1.25
Merged-chr6-128931003-1	chr6	128930903	128931103	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106107)	TTS (NR_106107)	842.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	5.65	4.78	6.28	2.01	11.86	13.48	2.66	9.62	2.95	4.02	1.51	1.88
Merged-chr9-48493909-1	chr9	48493809	48494009	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144948, intron 2 of 4)	ID_B1|SINE|B4	1421.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	1.62	5.79	7.42	5.63	4.09	5.02	3.65	2.21	15.34	4.52	1.51	7.21
Merged-chr1-36088004-1	chr1	36087904	36088104	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	19604.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	4.53	3.42	3.22	2.45	5.64	14.62	8.13	2.95	3.51	5.02	5.64
Merged-chr3-116859161-2	chr3	116859067	116859267	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113478)	promoter-TSS (NM_001113478)	-400.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	1.62	3.77	0.0	6.03	6.55	9.72	3.65	6.73	7.67	7.03	16.58	14.1
Merged-chr3-32333204-2	chr3	32333109	32333309	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32280.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	8.08	4.28	3.99	5.63	11.05	3.45	5.65	6.64	13.77	9.04	4.52	8.77
Merged-chr4-46550164-1	chr4	46550064	46550264	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 3 of 11)	intron (NM_001164804, intron 3 of 11)	-14023.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	1.21	2.77	0.57	1.21	1.64	3.76	4.98	5.36	2.95	3.01	6.53	2.51
Merged-chrX-70954895-1	chrX	70954795	70954995	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-95361.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	3.23	5.79	15.97	9.65	11.05	4.39	3.99	0.5	5.7	5.52	7.54	8.77
Merged-chr14-67716865-1	chr14	67716765	67716965	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	767.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	1.62	2.26	1.71	2.01	3.68	6.59	7.64	1.57	3.93	3.01	3.52	1.25
Merged-chr2-45118228-1	chr2	45118128	45118328	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355288)	promoter-TSS (NM_001355288)	-786.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.25	3.27	3.42	5.63	4.91	9.41	5.65	1.91	9.83	6.53	8.54	1.25
Merged-chr17-87285062-1	chr17	87284962	87285162	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	2176.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.63	2.52	4.56	2.41	3.27	0.31	1.99	3.2	1.77	1.0	0.0	6.27
Merged-chr10-68136214-1	chr10	68136114	68136314	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142512.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.83	3.02	2.28	4.02	6.14	2.82	2.99	6.06	4.52	3.51	5.53	8.14
Merged-chr3-149426545-3	chr3	149426438	149426638	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151801.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.85	6.54	18.25	8.45	6.14	5.64	9.63	10.04	14.36	9.54	11.56	3.76
Merged-chr4-48075687-1	chr4	48075587	48075787	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	24441.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	2.42	0.25	0.0	0.0	5.32	1.25	7.64	6.03	1.57	1.51	8.54	7.52
Merged-chr6-113062449-1	chr6	113062349	113062549	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	14795.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.81	1.51	6.28	4.42	6.55	8.78	5.31	6.25	7.47	7.03	8.54	2.82
Merged-chr1-34112167-1	chr1	34112067	34112267	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 5 of 102)	intron (NM_001276764, intron 5 of 102)	-5192.0	NR_105861	102466987.0		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	6.06	1.26	1.14	2.01	1.64	5.33	1.33	5.94	1.18	1.51	2.01	3.13
Merged-chr9-123016175-1	chr9	123016075	123016275	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010620, intron 32 of 34)	B1_Mur4|SINE|Alu	-5151.0	NM_025339	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	4.85	3.27	2.28	2.82	4.09	2.2	2.33	2.19	6.29	9.04	1.51	6.89
Merged-chr5-53948765-1	chr5	53948665	53948865	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49758.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.63	2.52	0.0	3.62	6.14	5.33	5.65	6.67	1.97	6.03	4.02	1.88
Merged-chr3-37342454-1	chr3	37342354	37342554	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6199.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	2.42	1.51	0.0	1.21	4.09	3.14	7.64	5.41	1.97	3.01	11.05	1.25
Merged-chr11-20215467-1	chr11	20215367	20215567	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	14055.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.85	6.79	3.42	3.22	6.95	10.35	5.98	6.62	4.52	9.04	6.03	5.64
Merged-chr17-34282012-1	chr17	34281912	34282112	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_010378)	TTS (NM_010378)	5759.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.42	15.59	8.56	10.05	0.82	4.39	1.0	0.87	13.96	3.51	1.51	1.25
Merged-chrX-140492472-1	chrX	140492372	140492572	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	35869.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	0.81	1.51	6.85	4.42	7.77	5.96	4.65	5.83	5.31	0.5	9.04	4.07
Merged-chr2-181529269-1	chr2	181529169	181529369	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	8784.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	1.62	1.26	5.7	0.4	9.0	5.96	3.99	6.36	4.13	3.01	8.04	2.82
Merged-chr3-22090100-1	chr3	22090000	22090200	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13448.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.08	6.79	3.42	5.63	4.09	2.82	6.64	5.75	6.1	3.51	2.01	3.13
Merged-chr4-13271991-1	chr4	13271891	13272091	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	365154.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.81	2.01	1.14	0.4	2.86	1.88	5.65	7.07	1.38	1.0	0.5	1.25
Merged-chr2-128804327-1	chr2	128804227	128804427	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13976.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.81	6.04	3.42	7.24	6.14	8.15	4.98	6.14	2.56	0.0	4.52	9.71
Merged-chr14-33246597-1	chr14	33246497	33246697	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	Zaphod2|DNA|hAT-Tip100	29774.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	1.21	1.76	9.7	1.21	2.45	7.84	11.63	6.84	5.11	11.05	5.53	6.27
Merged-chr8-80808337-2	chr8	80808241	80808441	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-68882.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	7.27	9.81	13.12	4.83	11.45	12.23	1.99	4.01	2.75	6.03	6.03	6.58
Merged-chr1-44101626-1	chr1	44101526	44101726	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029368, intron 2 of 7)	intron (NM_029368, intron 2 of 7)	815.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	4.04	10.56	8.56	9.65	4.91	10.03	7.64	8.64	8.65	7.03	13.06	6.89
Merged-chr18-68820091-1	chr18	68819991	68820191	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80691.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	4.04	3.77	4.56	6.44	6.55	0.63	1.33	7.6	0.98	0.0	1.0	0.0
Merged-chr13-49267845-1	chr13	49267745	49267945	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015759, intron 15 of 17)	ORR1E|LTR|ERVL-MaLR	-19139.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.85	3.77	4.56	4.83	4.91	2.51	5.31	5.58	7.28	5.52	3.52	6.89
Merged-chr18-65490021-1	chr18	65489921	65490121	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59024.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.06	5.53	5.7	9.65	8.18	8.15	1.33	7.96	5.9	5.02	9.04	3.45
Merged-chr10-43689299-1	chr10	43689199	43689399	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56859.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	2.42	5.03	5.13	6.03	6.55	8.47	2.66	7.93	3.93	8.54	7.03	7.52
Merged-chr9-21366626-1	chr9	21366526	21366726	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1245.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	5.25	3.52	3.42	6.84	0.82	3.14	0.66	2.83	9.83	4.52	0.5	6.89
Merged-chr4-48149434-2	chr4	48149335	48149535	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026343, intron 3 of 7)	intron (NM_026343, intron 3 of 7)	24516.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	2.83	3.02	2.28	10.46	3.68	5.02	2.33	4.37	11.6	8.03	13.06	3.76
Merged-chr13-100671095-1	chr13	100670995	100671195	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	1614.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	2.02	1.51	2.28	6.03	5.32	1.25	2.99	5.5	4.52	4.02	7.03	7.83
Merged-chr18-80195532-4	chr18	80195431	80195631	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199197, intron 3 of 5)	intron (NM_199197, intron 3 of 5)	5088.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0.4	2.01	4.56	6.03	1.64	0.31	6.64	5.1	0.98	4.02	4.52	4.7
Merged-chr13-54591988-1	chr13	54591888	54592088	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001347512)	TTS (NM_001347512)	1757.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	5.65	4.02	6.85	2.41	10.64	3.76	6.31	6.42	5.51	3.51	12.06	6.89
Merged-chr10-13048850-1	chr10	13048750	13048950	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	40400.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	4.04	2.01	1.14	1.61	2.45	1.88	5.65	4.37	3.54	4.52	7.54	0.31
Merged-chr11-19930361-1	chr11	19930261	19930461	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	B1_Mur3|SINE|Alu	5919.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.85	5.28	6.28	13.67	2.05	6.27	2.99	5.89	2.56	5.02	0.5	4.39
Merged-chr11-118246819-1	chr11	118246719	118246919	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1773.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	2.77	4.56	3.22	5.73	0.94	4.32	7.26	5.31	1.51	7.03	8.77
Merged-chr14-61860846-2	chr14	61860746	61860946	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-178473.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.06	4.53	8.56	12.07	4.09	13.17	9.97	5.1	7.67	9.04	5.02	9.4
Merged-chr7-120679206-2	chr7	120679079	120679279	+	708.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	1559.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	8.88	4.28	14.26	4.83	5.73	9.72	9.63	9.42	7.67	8.03	5.53	7.21
Merged-chr15-59719575-2	chr15	59719473	59719673	+	708.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.46	5.03	4.56	3.62	12.27	6.9	10.3	8.41	9.83	7.53	19.09	5.01
Merged-chr2-112240479-3	chr2	112240417	112240617	+	708.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207206, intron 1 of 13)	intron (NM_207206, intron 1 of 13)	676.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	11.31	9.06	2.28	12.47	5.32	7.53	3.65	8.97	12.0	12.55	7.03	10.96
Merged-chr16-18090288-2	chr16	18090164	18090364	+	708.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1074.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	12.92	5.53	7.99	4.83	12.27	7.84	4.98	9.59	8.46	9.04	11.56	6.89
Merged-chr10-55098499-2	chr10	55098389	55098589	+	708.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-1008428.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	3.63	6.54	11.41	4.42	8.59	8.47	8.3	6.25	9.83	15.06	11.05	4.7
Merged-chr1-153921821-3	chr1	153921718	153921918	+	708.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21889.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.86	10.06	8.56	6.84	19.64	8.78	7.97	7.26	13.57	12.55	8.04	8.77
Merged-chrX-12007105-5	chrX	12006981	12007181	+	708.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	73472.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	3.63	1.51	0.57	8.04	5.32	7.84	3.32	4.96	3.54	6.53	8.04	7.21
Merged-chr7-19306509-3	chr7	19306423	19306623	+	708.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	3522.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	12.11	6.79	5.7	9.25	10.23	13.8	6.31	5.24	12.78	12.05	12.06	9.08
Merged-chr10-128340473-3	chr10	128340362	128340562	+	708.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	B1_Mur4|SINE|Alu	2735.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	9.69	8.3	5.7	5.23	2.45	11.6	2.99	4.35	9.24	10.04	17.59	4.39
Merged-chr11-98963882-1	chr11	98963782	98963982	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001361954)	promoter-TSS (NM_001361954)	-990.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.06	2.52	3.42	6.03	10.64	6.27	7.97	7.23	3.74	4.52	10.05	3.13
Merged-chr6-72550063-2	chr6	72549914	72550114	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	367.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	5.65	0.5	0.57	6.44	4.91	1.88	5.65	9.17	5.11	10.04	7.54	2.51
Merged-chr6-37867065-2	chr6	37866951	37867151	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3760.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	3.23	3.52	6.85	7.64	4.5	6.9	6.98	9.03	7.08	4.02	23.62	8.77
Merged-chr8-22843804-2	chr8	22843727	22843927	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-15712.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	6.06	4.28	17.68	10.46	4.09	8.78	4.65	12.17	17.9	5.52	7.03	8.46
Merged-chr2-117093127-2	chr2	117093021	117093221	+	708.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27950.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.44	5.03	12.55	6.84	8.59	5.96	5.31	8.72	7.87	11.55	11.56	9.71
Merged-chr15-91254335-3	chr15	91254239	91254439	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62332.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	8.08	7.8	10.84	5.63	14.32	7.21	10.96	19.65	9.05	6.03	8.54	4.39
Merged-chr9-48163222-1	chr9	48163122	48163322	+	708.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	177676.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	5.25	5.53	2.28	7.24	5.73	9.41	6.98	5.55	3.34	9.54	6.03	2.82
Merged-chr14-101560815-3	chr14	101560729	101560929	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	48362.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	7.27	7.29	12.55	8.45	5.32	3.14	6.64	15.0	9.05	9.54	15.58	4.07
Merged-chr6-31128052-3	chr6	31127895	31128095	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-64902.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	2.42	2.52	2.28	2.41	4.09	8.47	3.99	1.77	4.13	7.53	9.55	2.82
Merged-chr19-60820558-1	chr19	60820458	60820658	+	708.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	9003.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	3.23	3.27	3.42	9.25	14.73	10.03	2.99	6.93	4.72	8.03	4.52	3.45
Merged-chr10-53461548-1	chr10	53461448	53461648	+	708.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51666.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	4.78	0.0	4.42	5.32	8.47	4.32	5.78	5.31	5.02	10.55	6.89
Merged-chr2-25074510-2	chr2	25074404	25074604	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5819.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	14.54	6.79	9.7	18.9	5.32	12.54	5.65	9.9	12.19	4.52	7.03	6.58
Merged-chr7-15912358-3	chr7	15912252	15912452	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10019.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	12.11	8.55	6.28	8.85	11.45	13.17	5.65	11.66	6.88	7.53	11.56	10.34
Merged-chr7-141568533-2	chr7	141568454	141568654	+	708.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	6374.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	13.33	4.53	2.28	6.84	9.0	3.76	5.31	8.78	5.9	5.52	4.02	6.89
Merged-chr2-30265844-2	chr2	30265764	30265964	+	708.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252568)	promoter-TSS (NM_001252568)	-339.0	NM_001252568	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	8.08	8.05	6.28	3.62	9.82	10.35	3.65	7.46	14.95	10.04	6.53	3.76
Merged-chr19-9916067-3	chr19	9915912	9916112	+	708.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16479.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.83	5.28	0.0	7.64	2.45	2.51	6.31	3.95	8.46	9.54	11.05	4.7
Merged-chr19-34847161-3	chr19	34847035	34847235	+	708.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	-26362.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	3.23	5.03	9.13	13.67	2.86	10.35	7.64	4.46	6.69	10.54	17.59	11.9
Merged-chr2-50652255-3	chr2	50652194	50652394	+	708.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-257390.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.04	7.8	2.28	7.64	7.77	7.21	3.65	9.73	8.26	8.03	10.05	5.33
Merged-chr1-154076198-1	chr1	154076098	154076298	+	708.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-124989.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.04	7.55	11.98	6.44	9.41	6.9	9.3	6.81	13.37	5.02	5.53	2.82
Merged-chr11-48994208-3	chr11	48994100	48994300	+	708.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1954.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	10.5	10.31	11.98	8.45	6.95	3.76	6.64	7.07	7.87	5.02	17.59	9.4
Merged-chr7-98836811-3	chr7	98836726	98836926	+	708.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285792, intron 2 of 6)	intron (NM_001285792, intron 2 of 6)	1714.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.04	7.8	11.98	10.05	9.82	3.14	8.3	9.22	3.93	7.03	10.55	7.83
Merged-chr15-76700785-3	chr15	76700682	76700882	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-760.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	7.67	10.06	7.99	0.4	11.45	7.21	6.98	9.67	6.88	14.06	7.03	7.52
Merged-chr5-5860088-1	chr5	5859988	5860188	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-110771.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	1.62	1.01	2.28	0.0	4.09	7.53	4.98	7.51	2.36	5.52	2.01	3.13
Merged-chr18-36319115-1	chr18	36319015	36319215	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19014.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	4.04	4.02	1.71	8.04	4.5	9.72	4.65	5.19	5.7	5.02	6.53	1.57
Merged-chr3-15231811-2	chr3	15231710	15231910	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100492.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.85	10.31	8.56	8.45	8.59	9.41	12.29	18.73	6.88	5.52	2.51	6.89
Merged-chr8-8992857-1	chr8	8992757	8992957	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139431.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	8.48	7.55	9.13	2.01	12.27	10.35	7.64	3.62	8.65	2.51	4.02	5.33
Merged-chr1-82832001-1	chr1	82831901	82832101	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7459.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	4.44	6.29	11.41	3.22	7.77	7.84	6.31	5.47	10.03	8.03	5.53	3.13
Merged-chr7-45742647-1	chr7	45742547	45742747	+	708.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360784)	promoter-TSS (NM_001360784)	-169.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	6.46	7.29	0.0	3.22	2.45	3.14	5.31	3.28	14.16	12.55	12.56	10.65
Merged-chrX-94435143-1	chrX	94435043	94435243	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7589.0	NR_045323	100503393.0	Mm.402891	NR_045323	ENSMUSG00000084904	Gm14827	-	predicted gene 14827	ncRNA	1.62	1.51	1.14	4.83	6.55	1.25	4.98	8.52	4.92	0.0	2.51	1.88
Merged-chr17-80776049-2	chr17	80775962	80776162	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48037.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	2.42	1.76	2.28	6.84	4.09	7.84	6.31	9.36	9.44	5.02	17.08	5.64
Merged-chr4-58985307-1	chr4	58985207	58985407	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	1771.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	6.46	4.28	5.7	3.22	4.91	8.15	4.32	6.31	6.49	4.02	5.02	5.33
Merged-chr18-31914638-1	chr18	31914538	31914738	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2735.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	8.48	5.03	6.85	2.82	2.45	5.96	3.32	8.33	6.29	14.06	4.52	4.07
Merged-chr4-102272523-2	chr4	102272416	102272616	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	17577.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.48	10.82	19.4	9.65	7.36	4.7	3.99	5.58	5.9	1.0	10.05	4.39
Merged-chr12-113014864-2	chr12	113014776	113014976	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	CpG	368.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	3.23	12.32	6.28	6.03	9.0	6.27	9.3	4.71	12.39	12.05	5.02	5.33
Merged-chr8-46868899-2	chr8	46868803	46869003	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117984.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.86	3.77	2.28	10.05	4.09	15.68	9.63	5.8	9.44	6.03	7.03	6.27
Merged-chrX-94142587-1	chrX	94142487	94142687	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-18820.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	4.85	5.28	5.7	4.42	9.0	11.6	5.31	6.28	5.7	4.02	11.56	2.82
Merged-chr11-94129835-2	chr11	94129726	94129926	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81628.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.86	4.53	7.99	6.84	7.77	11.92	2.33	10.91	10.23	10.04	7.03	6.27
Merged-chr8-10883508-2	chr8	10883420	10883620	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1066.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	6.06	7.04	6.28	7.24	6.95	6.59	11.96	12.5	2.95	2.01	7.54	2.51
Merged-chr12-3833847-1	chr12	3833747	3833947	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	26687.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.83	4.53	1.71	4.83	7.36	4.7	7.31	3.5	4.13	4.52	11.05	8.14
Merged-chr10-18049069-1	chr10	18048969	18049169	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6871.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.4	3.52	3.42	6.44	6.55	6.27	3.32	5.75	1.97	2.01	4.02	3.76
Merged-chr17-28736104-1	chr17	28736004	28736204	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168508, intron 8 of 11)	PB1D10|SINE|Alu	-33213.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.5	0.0	0.4	1.64	1.25	3.32	2.05	3.54	2.01	0.5	3.13
Merged-chr12-78792633-2	chr12	78792520	78792720	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019579, intron 1 of 14)	MTD|LTR|ERVL-MaLR	43673.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	2.42	0.5	1.71	1.61	6.95	8.78	2.33	8.61	7.87	8.03	6.03	5.95
Merged-chr12-81658223-3	chr12	81658145	81658345	+	708.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26996.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	13.73	4.28	15.4	8.85	6.14	14.11	7.31	7.32	7.08	9.04	7.54	7.52
Merged-chr11-53933502-3	chr11	53933395	53933595	+	708.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41792.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.65	8.55	12.55	9.25	11.05	9.72	1.99	9.14	8.26	12.05	8.54	8.46
Merged-chr5-97113682-3	chr5	97113555	97113755	+	708.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-2059.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	6.06	11.32	11.41	13.67	11.86	15.68	8.3	5.61	12.59	5.02	9.55	9.4
Merged-chr16-92695620-3	chr16	92695542	92695742	+	708.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001111021, exon 3 of 8)	exon (NM_001111021, exon 3 of 8)	1687.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	13.33	9.31	7.42	4.83	6.55	10.66	7.31	5.92	8.85	6.53	10.05	11.59
Merged-chr1-87607847-2	chr1	87607716	87607916	+	708.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12496.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	9.29	3.77	2.85	4.02	6.55	6.59	2.33	4.23	7.67	8.54	2.01	4.07
Merged-chr3-95758645-2	chr3	95758542	95758742	+	708.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3665.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	6.06	2.26	11.98	5.63	6.14	8.15	14.62	8.36	8.46	7.53	9.55	9.08
Merged-chr5-114651569-2	chr5	114651446	114651646	+	708.357178	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	6875.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	5.25	11.32	4.56	0.8	9.0	11.6	8.64	6.14	3.54	5.52	2.51	0.94
Merged-chr17-34356110-3	chr17	34356021	34356221	+	708.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 1 of 8)	MTD|LTR|ERVL-MaLR	1299.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	11.31	14.09	15.97	4.02	7.77	16.93	4.65	4.71	15.93	12.05	20.6	10.02
Merged-chr13-24608144-1	chr13	24608044	24608244	+	708.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-3377.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	4.44	1.76	11.41	4.83	5.73	7.21	7.64	4.96	2.75	8.03	3.01	5.64
Merged-chr4-99111922-3	chr4	99111825	99112025	+	708.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	MLT1K|LTR|ERVL-MaLR	8990.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	11.31	6.79	5.7	4.83	6.55	5.33	6.64	5.33	17.9	21.59	34.67	24.75
Merged-chr17-24676350-3	chr17	24676255	24676455	+	708.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	6668.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	17.77	8.05	3.99	6.84	7.77	9.41	2.33	5.13	14.95	9.54	4.52	8.77
Merged-chr19-47137864-1	chr19	47137764	47137964	+	708.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	430.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	5.25	5.79	4.56	4.83	6.95	9.09	5.31	6.14	5.9	6.03	10.55	4.39
Merged-chr17-34980775-3	chr17	34980693	34980893	+	708.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1061.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.46	8.3	5.7	6.84	4.5	11.92	6.64	5.16	22.23	15.06	35.17	9.08
Merged-chr4-130811893-3	chr4	130811796	130811996	+	708.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	19359.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	9.29	5.79	6.85	12.07	8.59	12.23	7.31	14.97	11.01	6.03	17.08	8.77
Merged-chr11-80489983-2	chr11	80489924	80490124	+	708.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	13001.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	6.06	2.26	5.7	8.45	6.95	5.33	5.65	10.54	4.13	3.01	4.02	5.95
Merged-chr17-29514593-3	chr17	29514485	29514685	+	708.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23540.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	12.11	7.55	14.83	6.84	12.27	8.15	7.64	4.88	10.62	9.54	7.03	5.01
Merged-chr3-105688921-3	chr3	105688806	105689006	+	708.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	4.04	4.28	8.56	8.45	9.0	12.54	10.96	11.66	8.06	7.53	13.57	3.76
Merged-chr14-31017813-1	chr14	31017713	31017913	+	708.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_153547, exon 2 of 15)	exon (NM_153547, exon 2 of 15)	1318.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	1.62	3.02	3.42	0.8	7.36	1.57	3.65	2.21	4.52	5.52	3.52	6.58
Merged-chr1-136670642-2	chr1	136670512	136670712	+	708.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12784.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.4	1.51	2.28	0.4	9.0	5.96	5.65	9.42	5.51	3.01	15.07	4.07
Merged-chr9-78477388-2	chr9	78477316	78477516	+	708.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4308.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	9.29	7.55	3.42	8.45	7.77	10.35	3.99	6.06	8.06	5.02	4.02	3.13
Merged-chr11-97801728-3	chr11	97801654	97801854	+	708.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	2189.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	11.71	2.77	11.98	3.62	4.5	6.27	10.96	6.98	9.05	10.54	4.52	8.77
Merged-chr4-138038591-3	chr4	138038509	138038709	+	708.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	40784.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.27	1.76	15.97	10.86	15.14	7.21	13.62	21.9	6.29	3.01	10.05	2.51
Merged-chrX-166351994-3	chrX	166351894	166352094	+	708.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177958, intron 1 of 6)	intron (NM_001177958, intron 1 of 6)	7441.0	NM_001177960	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	10.5	8.05	1.14	7.24	5.73	14.42	6.98	12.76	8.85	6.03	10.55	12.53
Merged-chr18-52956631-2	chr18	52956539	52956739	+	708.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	188495.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	4.44	4.78	11.41	6.84	4.5	8.15	3.32	6.0	13.37	14.06	16.08	12.53
Merged-chr5-147825802-2	chr5	147825699	147825899	+	708.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34829.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	7.27	4.28	6.28	4.02	6.55	4.08	3.32	6.03	12.0	9.54	6.03	13.47
Merged-chr6-134469419-3	chr6	134469313	134469513	+	708.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 13 of 22)	intron (NM_008514, intron 13 of 22)	54985.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.42	9.06	10.27	1.61	5.73	9.09	9.3	6.5	11.21	5.02	23.11	7.83
Merged-chr8-37063967-3	chr8	37063875	37064075	+	708.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39737.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	10.9	5.28	5.7	2.01	11.45	6.59	7.31	12.28	14.16	5.52	10.55	11.9
Merged-chr19-26749265-2	chr19	26749161	26749361	+	708.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	858.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	8.88	19.87	18.25	10.05	9.41	7.21	6.31	7.12	13.57	13.05	8.54	2.82
Merged-chr3-106568701-1	chr3	106568601	106568801	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025582, intron 5 of 6)	Lx7|LINE|L1	-20899.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	1.76	1.14	2.41	6.95	4.39	6.64	6.03	1.97	6.53	9.04	4.39
Merged-chr4-3513027-1	chr4	3512927	3513127	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24063.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	5.65	7.29	5.13	0.8	1.23	3.76	0.66	4.57	10.42	6.53	9.04	2.82
Merged-chr17-81787557-2	chr17	81787456	81787656	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49169.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	2.83	3.27	5.13	1.21	4.09	8.78	2.66	5.38	8.85	2.51	15.07	5.33
Merged-chr15-88537367-2	chr15	88537282	88537482	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62920.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.25	3.77	2.28	4.02	7.36	7.53	2.33	4.93	12.19	7.03	10.05	8.77
Merged-chr13-73508968-1	chr13	73508868	73509068	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-27779.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	4.04	6.54	4.56	7.24	7.77	5.02	3.99	6.28	2.36	1.0	6.53	1.88
Merged-chr3-103874509-2	chr3	103874403	103874603	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104070, intron 6 of 22)	intron (NR_104070, intron 6 of 22)	14226.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	6.86	1.51	4.56	9.65	5.73	7.53	3.32	10.99	8.46	17.07	8.04	5.33
Merged-chr1-152266558-1	chr1	152266458	152266658	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	120124.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	2.42	2.77	9.7	2.01	4.09	3.45	8.3	6.59	1.97	7.53	5.53	4.39
Merged-chr1-125459329-2	chr1	125459229	125459429	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23602.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.85	2.01	5.7	5.63	10.64	2.51	5.65	10.79	7.28	3.01	15.07	6.58
Merged-chr2-72367403-1	chr2	72367303	72367503	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	81702.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.62	1.26	5.13	4.83	1.64	8.15	1.33	6.42	2.95	5.02	4.52	5.01
Merged-chr15-96474854-2	chr15	96474760	96474960	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14017.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	6.46	4.53	1.71	8.45	5.73	6.9	3.65	8.97	5.51	6.53	9.55	4.39
Merged-chr3-146752960-1	chr3	146752860	146753060	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164200, intron 3 of 9)	intron (NM_001164200, intron 3 of 9)	17278.0	NM_001164198	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.4	1.01	1.14	1.61	0.82	0.63	4.65	6.79	0.59	0.5	2.51	0.94
Merged-chr5-67257626-1	chr5	67257526	67257726	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2939.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.0	2.77	0.0	0.0	0.41	3.76	1.66	0.5	12.0	18.08	9.55	2.19
Merged-chr1-74077527-1	chr1	74077427	74077627	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289895, intron 2 of 32)	intron (NM_001289895, intron 2 of 32)	46920.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	4.44	7.04	0.0	4.83	1.64	7.84	2.99	7.09	12.59	5.52	5.53	5.01
Merged-chr8-80949448-1	chr8	80949348	80949548	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65458.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.02	4.78	3.42	1.21	11.05	1.57	4.32	2.47	6.69	13.05	5.53	10.65
Merged-chr7-4034462-2	chr7	4034358	4034558	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	28746.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	1.62	3.77	1.14	2.41	5.73	7.53	3.99	9.42	3.34	9.54	5.53	12.84
Merged-chr3-54493789-2	chr3	54493693	54493893	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	132686.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.02	2.77	13.69	12.07	6.95	5.33	1.99	3.67	5.31	1.51	11.05	2.51
Merged-chr9-25578369-1	chr9	25578269	25578469	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	96772.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.23	1.76	2.85	4.02	4.91	0.63	4.98	4.29	5.31	6.03	10.05	2.19
Merged-chrX-53610784-1	chrX	53610684	53610884	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	2862.0	NM_028375	72865.0	Mm.158897	NM_028375	ENSMUSG00000051851	Rtl8c	2900027G03Rik|Cxx1c|Mar8.1|Mart8a	retrotransposon Gag like 8C	protein-coding	8.88	7.29	1.14	6.44	3.27	10.03	3.65	5.19	14.36	3.01	6.03	0.31
Merged-chr3-65801169-2	chr3	65801079	65801279	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166659, intron 9 of 12)	MTC|LTR|ERVL-MaLR	134951.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	5.65	7.8	11.98	10.05	3.27	3.14	4.32	9.17	10.03	3.51	18.09	8.14
Merged-chr12-10589871-2	chr12	10589755	10589955	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143467.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	4.85	2.77	1.71	3.22	7.36	10.03	5.65	7.82	8.65	5.02	12.06	5.95
Merged-chr14-100026205-1	chr14	100026105	100026305	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010636, intron 2 of 6)	intron (NM_010636, intron 2 of 6)	123591.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.23	1.51	5.7	1.61	4.91	6.27	3.99	12.28	3.74	8.54	3.01	0.94
Merged-chr11-83472447-1	chr11	83472347	83472547	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-661.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	6.06	3.77	1.14	3.22	3.27	13.8	1.33	5.16	4.33	2.51	5.02	5.64
Merged-chr2-132284996-2	chr2	132284815	132285015	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-1024.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	2.42	4.28	1.71	5.63	3.68	4.7	8.97	12.0	7.67	6.03	9.04	5.64
Merged-chr10-8011240-1	chr10	8011140	8011340	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55117.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	2.02	2.26	3.42	2.82	3.27	5.96	5.31	5.64	1.77	4.52	4.02	0.94
Merged-chr2-160369587-1	chr2	160369487	160369687	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2522.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.25	0.5	5.7	2.41	1.23	0.63	7.31	5.94	8.65	0.5	1.51	3.45
Merged-chr1-149948575-1	chr1	149948475	149948675	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	12715.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.63	1.01	4.56	5.63	4.5	5.64	3.65	7.35	4.33	5.52	3.52	5.01
Merged-chr13-99192798-1	chr13	99192698	99192898	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	7975.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.23	1.01	1.14	0.0	7.36	0.94	4.65	8.16	2.16	4.52	1.51	2.19
Merged-chr16-11434451-1	chr16	11434351	11434551	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28803.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.63	1.51	1.14	0.0	1.23	7.53	3.99	5.89	2.36	1.0	2.01	2.51
Merged-chr3-122466254-1	chr3	122466154	122466354	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-17315.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.23	3.27	2.28	1.61	3.27	5.64	7.64	5.61	8.06	1.51	8.04	5.64
Merged-chr6-124282907-1	chr6	124282807	124283007	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21744.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.04	2.26	3.42	1.61	5.73	6.59	5.65	7.37	5.11	4.02	9.55	5.95
Merged-chr13-113514208-1	chr13	113514108	113514308	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11364.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	10.09	7.55	10.27	10.46	0.82	0.0	3.32	0.59	0.0	1.51	1.0	0.63
Merged-chr13-73505863-1	chr13	73505763	73505963	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-30884.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	4.85	2.52	1.71	5.63	12.27	2.82	2.99	5.78	6.88	5.52	5.02	10.34
Merged-chr2-19300888-2	chr2	19300782	19300982	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-43435.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	2.83	4.78	5.7	0.8	5.32	5.33	5.65	11.47	8.06	6.03	8.54	4.39
Merged-chr18-9758489-1	chr18	9758389	9758589	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	50841.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	2.42	1.01	6.85	3.62	2.45	1.25	4.98	10.07	1.18	0.0	0.0	0.31
Merged-chr1-106822138-1	chr1	106822038	106822238	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25413.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	2.02	3.02	14.26	1.61	2.86	11.92	7.31	5.89	2.95	5.52	1.0	5.64
Merged-chr9-57759510-2	chr9	57759414	57759614	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	6346.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	6.06	7.55	7.42	0.8	10.23	9.41	2.99	3.59	5.51	6.03	11.56	3.76
Merged-chr10-62491027-1	chr10	62490927	62491127	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4222.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	7.27	4.78	3.42	0.8	9.41	5.96	5.65	6.81	7.47	6.53	5.02	4.39
Merged-chr7-72240224-1	chr7	72240124	72240324	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	66371.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	7.27	5.79	7.99	3.22	7.36	8.78	3.32	11.89	1.57	3.01	1.51	0.63
Merged-chr16-14439301-1	chr16	14439201	14439401	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008576, intron 14 of 30)	intron (NM_008576, intron 14 of 30)	77743.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	2.42	1.51	2.28	6.03	6.95	4.08	4.65	10.4	2.56	4.52	2.51	5.33
Merged-chr9-114887830-1	chr9	114887730	114887930	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-43678.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	6.06	4.28	1.71	8.04	4.91	3.45	5.98	6.67	2.16	3.01	4.52	3.45
Merged-chr13-113470359-2	chr13	113470307	113470507	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	(TC)n|Simple_repeat|Simple_repeat	32437.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	4.5	4.7	8.64	3.03	3.34	11.55	8.54	4.07
Merged-chr17-36892493-2	chr17	36892392	36892592	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2367.0	NM_001172168	195359.0	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	5.25	17.1	3.42	7.64	13.5	5.96	1.33	9.87	10.82	7.53	10.05	8.14
Merged-chr15-25557290-1	chr15	25557190	25557390	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-65260.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.23	9.06	15.4	0.0	2.05	6.9	1.66	1.79	4.52	3.51	1.51	2.19
Merged-chr7-118114728-1	chr7	118114628	118114828	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1419.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.85	2.52	3.42	2.41	6.55	8.15	3.32	4.35	5.51	8.03	12.06	4.39
Merged-chr1-91455563-1	chr1	91455463	91455663	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	3765.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	6.06	3.02	7.99	2.82	2.45	3.45	9.63	9.34	7.28	4.52	12.06	7.83
Merged-chr17-35873924-3	chr17	35873822	35874022	+	707.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175242, exon 2 of 3)	exon (NM_175242, exon 2 of 3)	-5856.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	10.5	8.8	8.56	7.64	6.55	13.48	4.65	4.99	13.96	13.05	14.57	3.45
Merged-chr13-58273917-5	chr13	58273789	58273989	+	707.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019832, intron 1 of 11)	CpG	299.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	5.65	5.79	4.56	6.84	6.55	5.33	4.32	6.11	2.75	8.54	10.55	9.71
Merged-chr10-127049590-3	chr10	127049484	127049684	+	707.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010009, intron 2 of 8)	intron (NM_010009, intron 2 of 8)	1338.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	11.31	9.56	1.71	3.62	2.45	9.72	3.99	9.08	9.44	16.57	11.56	6.58
Merged-chr3-133757976-2	chr3	133757886	133758086	+	707.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-213596.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	11.71	7.04	8.56	4.83	8.59	10.03	9.63	10.74	7.47	1.0	8.04	10.02
Merged-chr17-40763848-3	chr17	40763743	40763943	+	707.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009420)	TTS (NM_009420)	30303.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	8.08	6.04	11.41	8.45	9.41	5.96	3.32	6.39	17.51	10.54	20.1	7.83
Merged-chr2-128467709-3	chr2	128467607	128467807	+	707.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38356.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	9.69	6.04	13.69	1.21	6.55	16.93	4.65	5.5	26.75	39.16	15.07	5.33
Merged-chr1-177702487-4	chr1	177702379	177702579	+	707.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27335.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.04	8.05	5.7	6.84	1.64	8.15	6.98	5.24	5.9	3.01	4.52	7.83
Merged-chr4-24899369-2	chr4	24899270	24899470	+	707.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026742, intron 2 of 2)	L2a|LINE|L2	1287.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	4.85	4.78	7.42	10.05	10.64	10.98	6.64	17.92	6.69	7.53	12.56	7.21
Merged-chr19-41514252-2	chr19	41514161	41514361	+	707.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-10991.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	11.71	9.06	6.85	17.29	6.14	8.15	5.31	7.79	8.26	10.54	8.04	9.71
Merged-chr2-145827344-3	chr2	145827237	145827437	+	707.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	B1F|SINE|Alu	41221.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.65	3.77	5.13	4.83	9.41	7.84	7.31	7.37	8.06	6.03	7.54	8.77
Merged-chr8-85560149-2	chr8	85560039	85560239	+	707.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4868.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	5.25	4.28	15.97	3.62	8.18	10.03	3.65	7.23	9.83	11.55	15.58	7.52
Merged-chr1-171826250-4	chr1	171826172	171826372	+	707.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg2|LINE|L1	-13425.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.06	7.8	6.85	15.69	6.55	3.76	6.64	4.68	5.51	15.06	6.53	4.7
Merged-chr1-153953954-3	chr1	153953861	153954061	+	707.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54032.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	12.52	9.81	10.27	13.67	16.77	9.09	4.65	8.27	8.46	8.54	11.05	1.88
Merged-chr5-34210438-3	chr5	34210327	34210527	+	707.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-22717.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	9.29	14.34	8.56	6.84	9.82	10.98	4.98	10.65	18.69	10.54	13.57	8.77
Merged-chr13-9098399-3	chr13	9098311	9098511	+	707.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	4530.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	12.11	8.3	8.56	8.45	8.59	15.05	4.98	5.61	11.41	16.57	15.07	7.21
Merged-chr15-86140555-1	chr15	86140455	86140655	+	707.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45173.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.85	2.52	3.42	3.22	16.36	6.9	12.95	5.27	5.9	3.51	6.03	5.95
Merged-chr7-109028460-2	chr7	109028358	109028558	+	707.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021885, intron 9 of 11)	intron (NM_021885, intron 9 of 11)	17578.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	4.85	6.54	6.85	8.04	5.32	5.02	5.98	10.91	8.85	5.02	11.56	2.19
Merged-chr13-49192632-4	chr13	49192492	49192692	+	707.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5045.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.88	7.04	6.85	3.62	9.41	4.7	7.64	6.31	7.67	6.53	9.04	4.39
Merged-chr3-117868287-1	chr3	117868187	117868387	+	707.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	649.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	2.83	1.76	4.56	2.82	7.77	6.9	16.61	6.36	2.16	7.53	5.02	2.82
Merged-chr7-126378031-3	chr7	126377933	126378133	+	707.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023712)	promoter-TSS (NM_023712)	-99.0	NR_045537	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	4.04	8.3	9.13	9.65	14.32	7.53	4.98	6.06	14.16	10.54	18.09	9.4
Merged-chr15-59375115-2	chr15	59374993	59375193	+	707.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153548)	promoter-TSS (NM_153548)	895.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	2.01	1.14	1.61	7.36	4.08	8.64	3.84	1.97	5.52	5.53	10.34
Merged-chr1-170867032-2	chr1	170866929	170867129	+	707.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	742.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	6.06	5.03	4.56	0.8	14.73	12.86	4.32	4.91	7.87	14.56	10.05	6.89
Merged-chr4-99192852-2	chr4	99192810	99193010	+	707.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-1024.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.67	6.29	5.7	5.23	6.95	4.39	6.98	7.85	5.31	3.51	2.01	5.33
Merged-chr13-109229368-2	chr13	109229284	109229484	+	707.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-95360.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	8.08	6.54	9.13	14.48	7.36	7.84	6.64	8.78	5.9	7.53	8.54	4.07
Merged-chr1-74437572-2	chr1	74437468	74437668	+	707.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28184.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	5.65	3.02	7.42	4.83	11.45	15.68	1.66	4.65	14.36	15.57	11.05	8.14
Merged-chr12-73358810-2	chr12	73358680	73358880	+	707.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50783.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	6.06	0.75	0.57	4.02	6.55	3.76	11.29	13.15	15.54	7.53	8.04	7.21
Merged-chr11-88234171-2	chr11	88234072	88234272	+	707.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29784.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	2.42	1.01	2.28	6.84	4.91	5.64	9.3	6.11	17.31	13.56	15.07	11.9
Merged-chr5-5494478-2	chr5	5494379	5494579	+	707.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15336.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	10.09	4.28	10.27	4.83	9.41	10.03	7.31	13.63	13.18	11.05	7.54	16.6
Merged-chr2-132316131-3	chr2	132316024	132316224	+	707.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30185.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	9.29	8.55	9.7	5.63	11.05	13.48	4.65	9.42	6.88	14.56	10.55	7.52
Merged-chr7-110669594-3	chr7	110669494	110669694	+	707.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41937.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	10.5	9.56	28.52	11.66	6.95	5.64	15.94	10.07	9.05	13.05	13.57	11.9
Merged-chr5-147363221-2	chr5	147363134	147363334	+	707.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010229, intron 9 of 23)	intron (NM_010229, intron 9 of 23)	37255.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	12.92	8.8	7.99	8.85	9.82	12.23	8.64	9.14	9.83	4.02	5.53	4.07
Merged-chr9-77725727-2	chr9	77725620	77725820	+	707.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-28815.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	8.88	9.06	12.55	17.29	10.64	10.66	15.94	7.09	4.33	8.54	6.03	7.52
Merged-chr8-70585436-3	chr8	70585342	70585542	+	707.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 7 of 11)	intron (NM_007924, intron 7 of 11)	-9039.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	9.69	2.77	7.99	9.25	9.41	5.96	6.31	8.86	18.69	11.55	14.07	9.4
Merged-chr1-57868828-1	chr1	57868728	57868928	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	23257.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.81	2.77	0.0	4.42	3.68	8.15	5.65	7.29	0.0	0.0	3.01	1.57
Merged-chr3-61306714-2	chr3	61306604	61306804	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57803.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.83	2.77	0.0	0.0	11.45	10.35	5.98	10.21	11.01	7.03	7.03	3.13
Merged-chr7-118637602-1	chr7	118637502	118637702	+	707.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028930, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3866.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.81	8.3	5.7	4.02	4.09	3.14	1.33	3.06	10.82	8.03	16.58	6.27
Merged-chr6-136967670-2	chr6	136967552	136967752	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13129.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	2.42	3.27	2.28	3.62	9.0	11.92	9.3	10.54	5.31	7.03	8.54	7.21
Merged-chr15-80081358-1	chr15	80081258	80081458	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013762, intron 3 of 9)	intron (NM_013762, intron 3 of 9)	1548.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	1.21	2.52	4.56	2.41	9.0	0.0	4.32	7.32	5.31	1.0	3.52	6.27
Merged-chr15-35870511-2	chr15	35870413	35870613	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 44 of 61)	intron (NM_177151, intron 44 of 61)	67733.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	12.11	6.29	8.56	3.62	9.0	7.53	6.98	7.35	6.69	7.53	10.05	7.21
Merged-chr10-21383114-1	chr10	21383014	21383214	+	707.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178713, intron 3 of 6)	intron (NM_178713, intron 3 of 6)	5814.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.4	4.53	5.7	2.41	2.45	6.27	0.0	2.1	12.0	11.55	9.04	2.82
Merged-chr9-106236296-2	chr9	106236203	106236403	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020559, intron 9 of 10)	intron (NM_020559, intron 9 of 10)	11427.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	9.69	6.29	8.56	5.63	7.36	7.21	7.64	15.7	7.47	3.01	1.51	1.25
Merged-chr15-59249020-1	chr15	59248920	59249120	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	5.65	5.53	0.0	6.44	4.5	9.41	3.99	6.36	2.75	3.01	7.54	3.45
Merged-chr17-36257509-1	chr17	36257409	36257609	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026308, exon 3 of 5)	exon (NM_026308, exon 3 of 5)	337.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	2.83	2.01	3.99	6.84	13.91	9.41	6.98	5.97	7.08	5.02	6.03	9.71
Merged-chrX-164066408-2	chrX	164066291	164066491	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9744.0	NM_001308386	20438.0	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	siah E3 ubiquitin protein ligase 1B	protein-coding	5.65	3.02	10.27	6.84	7.77	14.42	5.31	13.43	7.47	12.55	16.08	5.64
Merged-chr13-45458242-1	chr13	45458142	45458342	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-49202.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	2.42	4.02	5.7	2.01	6.14	9.41	3.65	5.86	2.16	1.0	1.0	2.82
Merged-chr5-121733993-3	chr5	121733900	121734100	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	-4532.0	NM_001359153	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	9.69	5.79	3.42	3.62	6.14	8.78	3.99	13.04	8.65	7.03	11.56	6.27
Merged-chr14-47445101-1	chr14	47445001	47445201	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26694.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	4.04	5.03	6.28	2.01	2.86	9.09	4.98	5.44	3.54	5.52	8.54	7.83
Merged-chr15-61157695-2	chr15	61157582	61157782	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-236412.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	2.83	6.79	6.28	2.82	2.86	6.27	5.65	5.8	11.01	8.03	5.53	6.89
Merged-chr2-33909196-1	chr2	33909096	33909296	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-21250.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	1.62	0.75	1.14	1.61	4.5	5.02	6.31	7.15	7.67	5.02	7.03	5.33
Merged-chr9-35479696-2	chr9	35479619	35479819	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021339, intron 13 of 18)	intron (NM_021339, intron 13 of 18)	27643.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	6.86	8.55	6.85	15.69	6.95	8.15	8.97	14.33	0.0	0.5	0.0	0.0
Merged-chr1-36598524-2	chr1	36598410	36598610	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-5178.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	6.46	2.77	7.42	0.4	5.32	4.7	5.65	5.58	10.82	7.03	11.05	2.82
Merged-chr8-114438458-2	chr8	114438359	114438559	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1193.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	5.25	4.78	3.99	4.02	7.36	5.02	4.32	7.96	19.28	7.03	11.56	4.7
Merged-chr12-42187319-1	chr12	42187219	42187419	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2B|LINE|L1	-701262.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.81	0.75	1.14	3.22	9.82	6.9	7.97	8.72	1.97	5.52	4.52	2.19
Merged-chr2-93943227-1	chr2	93943127	93943327	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13873.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	2.77	0.0	0.8	6.55	0.94	4.65	7.63	7.28	8.54	12.56	5.95
Merged-chr10-91180140-3	chr10	91180085	91180285	+	707.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8566.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	8.48	2.01	17.11	14.48	2.05	6.9	6.31	8.86	7.67	14.06	12.06	4.7
Merged-chr1-91380662-2	chr1	91380571	91380771	+	707.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023343, intron 9 of 11)	intron (NM_023343, intron 9 of 11)	14241.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	9.69	7.29	8.56	4.83	9.0	9.09	5.98	8.64	13.96	13.05	9.04	8.77
Merged-chr7-118490782-3	chr7	118490675	118490875	+	707.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1200.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	8.08	6.29	6.85	7.24	7.77	17.87	3.99	9.14	11.6	16.57	13.06	15.35
Merged-chr2-132631022-2	chr2	132630931	132631131	+	707.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033468, intron 4 of 5)	intron (NR_033468, intron 4 of 5)	32835.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	5.65	2.26	7.99	10.86	7.36	6.27	6.64	11.41	9.44	5.52	4.02	14.72
Merged-chr14-62888046-2	chr14	62887941	62888141	+	707.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 2 of 11)	Lx6|LINE|L1	22499.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	1.21	3.77	2.85	5.63	4.09	4.39	5.98	8.24	13.96	10.54	14.07	9.71
Merged-chr2-152951680-1	chr2	152951580	152951780	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145744)	promoter-TSS (NM_145744)	-98.0	NM_001159376	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	1.62	4.28	3.99	2.41	6.95	12.86	1.66	6.81	3.74	6.03	2.51	3.45
Merged-chr16-30236525-3	chr16	30236448	30236648	+	707.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30984.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	7.67	5.28	10.27	7.24	11.86	12.54	1.33	5.38	20.06	10.54	11.56	15.98
Merged-chr1-131638350-1	chr1	131638250	131638450	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007799)	promoter-TSS (NM_007799)	36.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.81	3.27	1.14	2.01	6.14	6.9	8.3	7.65	2.75	3.51	4.02	3.13
Merged-chr2-43806552-1	chr2	43806452	43806652	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57728.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	1.62	4.78	0.0	2.41	10.64	4.7	6.31	3.81	9.05	5.02	10.55	5.33
Merged-chrX-134599583-1	chrX	134599483	134599683	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013463, intron 1 of 6)	intron (NM_013463, intron 1 of 6)	1422.0	NM_013463	11605.0	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	5.25	3.77	2.28	5.63	9.82	5.96	4.98	6.93	12.98	8.54	8.54	5.01
Merged-chr16-32607717-1	chr16	32607617	32607817	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1179.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	6.06	4.02	5.7	12.07	8.18	8.78	7.97	5.24	5.7	6.03	7.54	11.28
Merged-chr5-99220546-3	chr5	99220436	99220636	+	707.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	32391.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	12.52	4.28	7.99	1.61	9.0	8.15	7.97	5.69	11.41	8.54	7.54	6.27
Merged-chr12-4159391-1	chr12	4159291	4159491	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	25238.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.04	3.02	7.42	2.01	17.18	9.72	6.98	5.5	3.74	9.54	5.02	0.0
Merged-chr19-12567180-2	chr19	12567076	12567276	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6334.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.44	3.27	3.99	10.86	8.59	7.53	2.66	8.36	8.65	3.51	8.54	9.4
Merged-chr13-90527176-2	chr13	90527065	90527265	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	378190.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.81	0.0	0.0	1.21	13.91	3.76	5.65	11.64	8.06	4.02	12.06	6.27
Merged-chr3-37956792-3	chr3	37956680	37956880	+	707.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	57967.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	6.06	7.29	7.42	13.67	5.32	2.2	10.96	14.92	11.6	8.54	19.09	7.83
Merged-chr5-74957856-2	chr5	74957760	74957960	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8666.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	8.88	4.78	4.56	8.85	7.36	5.64	14.28	7.01	10.23	12.55	10.55	5.33
Merged-chr3-22061358-2	chr3	22061261	22061461	+	707.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15291.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.65	6.04	13.12	10.86	6.95	4.39	12.95	9.98	4.72	5.52	9.55	11.28
Merged-chr16-16584829-3	chr16	16584733	16584933	+	707.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	15145.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	9.29	8.05	7.42	2.41	10.23	6.9	2.66	5.94	6.69	12.55	14.07	3.76
Merged-chr3-10087726-1	chr3	10087626	10087826	+	707.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045710)	promoter-TSS (NR_045710)	-551.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.95	11.55	13.06	7.83
Merged-chr7-44247244-2	chr7	44247136	44247336	+	707.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025880, intron 1 of 5)	intron (NM_025880, intron 1 of 5)	514.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	13.73	7.04	17.11	9.65	9.41	16.62	17.94	10.82	16.52	4.52	9.55	11.9
Merged-chr16-33625725-2	chr16	33625604	33625804	+	707.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-58762.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	11.31	12.32	8.56	7.24	5.73	12.54	4.65	4.85	4.72	6.53	5.53	3.45
Merged-chr6-26297566-2	chr6	26297456	26297656	+	707.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	366130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.44	6.29	9.13	11.26	9.41	12.23	10.3	4.88	11.6	10.04	10.55	5.64
Merged-chr10-118592824-2	chr10	118592725	118592925	+	707.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36300.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.65	7.04	3.42	7.24	9.0	3.14	5.31	6.2	12.98	11.55	12.56	6.89
Merged-chr4-132947813-2	chr4	132947711	132947911	+	707.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25260.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.85	7.8	3.42	2.82	15.14	17.25	9.63	6.17	21.05	10.04	9.04	5.33
Merged-chr8-94228102-3	chr8	94227988	94228188	+	707.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172410, intron 3 of 22)	intron (NM_172410, intron 3 of 22)	13524.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	2.02	7.04	5.13	11.66	5.73	4.7	1.99	9.67	10.42	3.51	6.03	11.28
Merged-chr3-144705346-2	chr3	144705251	144705451	+	707.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	14984.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	1.62	4.02	1.14	0.8	12.27	6.59	9.3	5.75	14.16	14.06	12.06	11.59
Merged-chr19-42518320-3	chr19	42518244	42518444	+	707.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-461.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	9.29	8.55	5.13	13.27	14.73	8.15	5.31	9.7	17.31	8.54	10.55	9.71
Merged-chr7-66110043-3	chr7	66109930	66110130	+	707.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081163, exon 1 of 3)	exon (NM_001081163, exon 1 of 3)	515.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	10.09	5.28	10.27	4.83	13.09	9.09	7.31	8.75	10.42	11.55	3.52	5.33
Merged-chr9-40345313-3	chr9	40345215	40345415	+	707.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	930.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.86	5.03	9.7	8.45	10.64	11.92	5.98	15.11	8.65	3.51	8.04	8.46
Merged-chr11-3676612-2	chr11	3676530	3676730	+	707.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198162, intron 8 of 25)	intron (NM_198162, intron 8 of 25)	17930.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	10.5	4.53	10.27	10.05	7.77	7.53	6.98	5.36	7.08	7.53	19.09	8.14
Merged-chr14-9426901-1	chr14	9426801	9427001	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-457194.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.81	1.51	2.28	0.8	4.09	2.2	6.98	6.45	0.0	0.0	1.51	0.0
Merged-chr2-113819600-1	chr2	113819500	113819700	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	9491.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	4.04	4.53	7.99	6.44	6.55	1.25	3.65	14.02	4.92	1.0	6.53	5.01
Merged-chr17-22165949-1	chr17	22165849	22166049	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	28.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	4.04	1.76	3.42	4.83	5.32	4.7	2.33	4.09	3.34	9.54	7.54	5.95
Merged-chr8-120678618-2	chr8	120678514	120678714	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10294.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	6.06	4.02	3.42	3.62	12.68	5.33	1.99	5.38	10.42	6.03	16.08	4.39
Merged-chr4-150031395-1	chr4	150031295	150031495	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22372.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.81	5.03	3.42	3.62	0.0	4.08	2.99	5.94	3.15	2.51	3.52	2.51
Merged-chr19-12435901-1	chr19	12435801	12436001	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	7996.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	14.54	18.86	25.1	12.07	16.77	22.89	17.27	6.14	13.37	15.57	6.03	8.14
Merged-chr6-8288974-1	chr6	8288874	8289074	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	29686.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	8.48	4.53	6.85	7.64	7.77	3.76	0.66	15.53	4.13	4.02	11.05	4.39
Merged-chr17-86788505-1	chr17	86788405	86788605	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34641.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.23	2.01	6.85	4.83	7.77	4.39	4.98	6.28	4.13	3.01	5.02	1.88
Merged-chr9-83807773-1	chr9	83807673	83807873	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1468.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	3.63	4.02	6.28	1.21	3.68	0.31	4.98	4.71	5.31	5.02	6.53	4.07
Merged-chr9-90239315-1	chr9	90239215	90239415	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	31454.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.75	3.99	6.44	4.09	4.08	4.65	7.68	1.18	1.0	8.54	9.4
Merged-chr2-18687947-2	chr2	18687859	18688059	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10941.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	4.85	7.04	1.14	1.61	9.0	1.88	1.0	7.21	17.31	8.54	7.54	11.28
Merged-chr6-135195069-1	chr6	135194969	135195169	+	707.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040296)	TTS (NR_040296)	-2918.0	NM_001362110	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	1.21	0.0	0.0	0.8	0.41	0.0	0.0	0.03	8.26	4.02	14.57	6.89
Merged-chr19-11092295-2	chr19	11092221	11092421	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11218.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	7.67	3.02	6.28	3.22	6.95	10.66	1.99	1.96	5.51	7.03	14.07	2.19
Merged-chr6-115996515-2	chr6	115996402	115996602	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1497.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	8.88	3.02	0.0	4.42	2.86	7.21	4.32	5.69	8.65	5.52	13.06	4.39
Merged-chr9-37101837-2	chr9	37101729	37101929	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	45493.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	14.54	7.55	23.39	7.64	6.55	4.08	4.32	6.7	2.75	1.0	0.5	0.31
Merged-chr14-25301824-1	chr14	25301724	25301924	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-157361.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.04	2.77	0.0	2.82	4.09	4.08	2.99	5.86	0.59	1.0	3.01	2.51
Merged-chr16-17718034-2	chr16	17717927	17718127	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	4873.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	2.42	7.04	6.85	2.01	10.64	18.81	4.65	6.59	8.85	10.54	9.04	9.4
Merged-chr13-43118965-1	chr13	43118865	43119065	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-3874.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.46	1.51	1.14	1.61	4.09	3.14	4.98	7.77	0.0	1.51	0.0	0.94
Merged-chr1-87007939-1	chr1	87007839	87008039	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 14 of 21)	intron (NM_001172157, intron 14 of 21)	81989.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	3.63	4.28	5.13	9.65	4.91	6.27	5.65	10.68	2.95	1.0	4.52	3.76
Merged-chr12-24697251-2	chr12	24697146	24697346	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11008.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	8.08	2.77	1.71	5.63	8.18	10.35	2.99	11.07	8.46	9.04	13.06	1.57
Merged-chr11-76456388-2	chr11	76456298	76456498	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 10 of 21)	intron (NM_001346670, intron 10 of 21)	12067.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.44	6.54	12.55	4.83	3.27	10.66	0.0	2.69	9.64	7.03	6.53	7.83
Merged-chr4-62729344-1	chr4	62729244	62729444	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	55370.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	1.51	0.0	0.0	3.27	17.56	6.98	3.81	2.75	1.0	2.01	3.76
Merged-chr6-97972029-1	chr6	97971929	97972129	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001178049, intron 2 of 9)	B4A|SINE|B4	-19754.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	8.88	3.77	8.56	2.41	1.64	9.09	1.33	5.55	6.29	3.51	9.04	6.27
Merged-chr9-13664745-1	chr9	13664645	13664845	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	2285.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	1.62	1.51	1.71	2.41	7.36	4.08	1.99	7.26	1.57	0.5	2.01	1.88
Merged-chr11-78360239-1	chr11	78360139	78360339	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13529.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.85	3.77	6.85	1.21	9.0	8.15	4.32	5.97	8.26	4.52	11.05	2.51
Merged-chr2-150919512-1	chr2	150919412	150919612	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027014, intron 4 of 6)	L1Md_F2|LINE|L1	9918.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	2.02	2.01	3.42	4.83	10.64	3.14	9.3	0.0	6.49	5.52	9.04	9.08
Merged-chr7-15930102-2	chr7	15929988	15930188	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7717.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	2.42	3.52	7.42	3.22	2.45	8.47	2.66	1.09	11.01	4.02	14.57	3.76
Merged-chrX-101640922-1	chrX	101640822	101641022	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290535, intron 1 of 21)	intron (NM_001290535, intron 1 of 21)	704.0	NM_001290535	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	4.85	15.59	1.14	1.61	7.36	27.28	13.62	4.99	14.95	6.03	7.03	4.07
Merged-chr12-84148409-1	chr12	84148309	84148509	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027438)	promoter-TSS (NM_027438)	80.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	6.46	4.53	1.14	9.65	2.86	2.2	6.31	6.34	0.98	4.52	2.01	3.45
Merged-chr10-127540518-1	chr10	127540418	127540618	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 83 of 88)	intron (NM_008512, intron 83 of 88)	-5959.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.63	0.5	2.85	1.61	4.5	1.57	7.97	2.38	2.36	3.01	2.01	7.52
Merged-chr6-56653275-3	chr6	56653182	56653382	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51417.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.46	6.04	8.56	13.27	16.36	10.35	20.59	11.27	11.8	9.04	20.6	6.58
Merged-chr7-24901320-1	chr7	24901220	24901420	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007655, intron 4 of 4)	intron (NM_007655, intron 4 of 4)	-1666.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	8.08	2.01	2.85	0.0	3.27	7.21	11.29	6.0	7.08	2.01	12.06	7.83
Merged-chr10-20763438-1	chr10	20763338	20763538	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38360.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.23	3.27	5.7	8.85	11.86	6.9	3.99	6.76	8.46	9.54	9.04	4.39
Merged-chr1-39368874-1	chr1	39368774	39368974	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	1023.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.81	3.27	2.28	0.8	2.45	2.82	3.99	5.72	5.51	8.54	5.53	10.96
Merged-chr5-67958645-1	chr5	67958545	67958745	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256184, intron 2 of 3)	(CAAAA)n|Simple_repeat|Simple_repeat	-15564.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0.0	1.01	0.0	0.0	0.0	8.47	5.65	10.32	0.39	1.51	0.5	0.0
Merged-chr10-42962359-1	chr10	42962259	42962459	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28803.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	6.46	6.79	5.13	6.84	3.27	7.84	12.29	6.87	3.15	3.51	8.54	7.83
Merged-chr13-20182411-2	chr13	20182315	20182515	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91908.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.88	3.02	3.42	5.23	4.09	9.72	3.99	3.87	12.39	9.04	10.05	9.4
Merged-chr9-88959104-1	chr9	88959004	88959204	+	707.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	2184.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	2.42	6.54	1.14	4.02	4.5	5.64	2.66	1.37	12.39	6.03	10.55	9.08
Merged-chr4-102955734-2	chr4	102955655	102955855	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-30624.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	3.23	3.27	13.12	2.41	8.18	7.53	7.31	6.28	2.36	2.51	2.01	7.21
Merged-chr8-119123075-1	chr8	119122975	119123175	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019707, intron 7 of 13)	GA-rich|Low_complexity|Low_complexity	-221463.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	5.25	0.25	5.7	0.0	10.23	3.76	1.99	6.36	1.38	0.0	1.51	2.19
Merged-chr3-96489711-1	chr3	96489611	96489811	+	707.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-35474.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.25	0.0	0.0	5.11	10.54	7.03	9.4
Merged-chr8-56324375-1	chr8	56324275	56324475	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29823.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.83	1.26	2.85	2.01	11.45	4.39	7.64	6.36	2.56	4.02	2.51	0.31
Merged-chr16-38713299-1	chr16	38713199	38713399	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020260)	promoter-TSS (NM_020260)	-264.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	8.88	4.53	10.84	13.67	8.59	8.15	6.98	7.88	13.37	19.58	21.61	10.02
Merged-chr15-8625581-2	chr15	8625481	8625681	+	706.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85226.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.63	7.29	1.71	4.02	7.36	8.78	7.64	13.37	9.24	10.04	6.53	6.89
Merged-chr16-93055750-3	chr16	93055648	93055848	+	706.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-229674.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.08	7.55	11.41	20.11	8.59	5.33	3.99	8.72	11.21	4.02	24.62	13.78
Merged-chr8-66862561-3	chr8	66862479	66862679	+	706.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	2362.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	6.06	13.33	4.56	10.46	5.73	11.6	6.98	5.75	6.29	15.06	12.06	10.96
Merged-chr17-32506403-3	chr17	32506252	32506452	+	706.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101445)	promoter-TSS (NM_001101445)	-110.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	8.08	6.54	7.42	3.22	4.5	6.27	7.97	8.86	8.46	8.03	6.03	7.21
Merged-chr10-81082344-3	chr10	81082234	81082434	+	706.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022653)	TTS (NM_022653)	12251.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	8.08	4.53	7.99	10.46	11.45	6.9	5.98	4.54	10.23	12.55	6.53	8.77
Merged-chr6-129097625-2	chr6	129097535	129097735	+	706.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	3268.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	5.25	3.02	1.14	11.66	14.73	12.86	4.65	8.05	9.24	16.07	6.53	10.65
Merged-chr4-130838109-2	chr4	130838017	130838217	+	706.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45580.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	9.69	6.54	9.13	9.65	15.96	9.72	6.31	13.15	8.46	4.52	10.55	3.76
Merged-chr6-134607492-2	chr6	134607378	134607578	+	706.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25010.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.44	3.27	3.42	3.22	5.73	6.59	6.31	8.92	10.23	11.55	16.08	7.21
Merged-chr17-45581568-4	chr17	45581396	45581596	+	706.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8235.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.04	2.77	1.14	1.61	0.41	3.45	1.99	0.62	4.52	2.01	2.01	6.89
Merged-chr12-111759897-2	chr12	111759795	111759995	+	706.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1027.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	8.88	2.52	0.57	8.04	4.09	12.86	7.97	8.36	3.74	4.52	5.02	9.4
Merged-chr7-122199464-2	chr7	122199354	122199554	+	706.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13223.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	8.88	5.28	5.7	2.41	7.36	5.96	6.31	6.95	13.57	4.02	8.54	6.89
Merged-chr3-105948533-2	chr3	105948419	105948619	+	706.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304719, intron 8 of 9)	L2|LINE|L2	-10979.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	5.25	7.29	15.4	8.45	9.0	8.47	9.97	11.38	10.03	1.0	9.55	3.76
Merged-chr3-61389644-1	chr3	61389544	61389744	+	706.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25137.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.4	0.0	0.0	0.0	9.41	14.42	6.64	7.07	8.06	6.03	3.52	1.57
Merged-chr18-75369217-3	chr18	75369129	75369329	+	706.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001042660, exon 1 of 4)	exon (NM_001042660, exon 1 of 4)	1864.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	3.63	7.55	3.42	6.84	3.27	12.54	5.31	11.78	9.24	2.51	19.09	7.83
Merged-chr1-33982212-1	chr1	33982112	33982312	+	706.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-29613.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	2.83	3.77	6.85	7.24	11.05	7.21	6.31	5.86	2.56	1.51	8.04	8.77
Merged-chr17-27754277-2	chr17	27754180	27754380	+	706.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-23277.0	NM_001357728	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	14.94	7.55	9.7	16.49	4.91	5.02	4.65	10.4	5.51	3.51	1.0	4.07
Merged-chr1-92774978-2	chr1	92774887	92775087	+	706.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56658.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	11.31	5.03	8.56	5.23	10.64	8.15	4.32	8.21	5.9	8.03	4.52	4.07
Merged-chr7-110613825-3	chr7	110613715	110613915	+	706.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	1105.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	6.46	4.28	11.98	11.26	12.27	6.59	8.97	13.93	9.64	9.04	17.59	6.89
Merged-chr6-140715179-3	chr6	140715066	140715266	+	706.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88281.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	8.48	8.8	9.7	9.25	6.95	6.9	6.64	11.69	6.88	13.05	13.57	8.77
Merged-chr17-25732278-3	chr17	25732176	25732376	+	706.772217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357176)	TTS (NM_001357176)	-3764.0	NM_177822	328783.0	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	7.67	6.79	12.55	9.65	9.82	9.41	5.31	6.84	13.57	19.58	19.6	8.46
Merged-chr6-120915050-2	chr6	120914953	120915153	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1771.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.44	7.04	7.42	2.82	10.23	9.09	11.96	11.83	7.67	19.08	12.06	5.33
Merged-chr11-97793348-2	chr11	97793254	97793454	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-6211.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	2.83	5.28	3.42	2.82	15.55	14.11	6.31	4.68	10.23	6.03	12.06	10.34
Merged-chr11-120989833-2	chr11	120989695	120989895	+	706.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	1538.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	8.88	10.56	8.56	2.01	3.68	9.41	2.99	2.97	11.41	14.06	4.52	5.01
Merged-chr11-117385026-2	chr11	117384920	117385120	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29369.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	5.25	14.09	7.42	4.83	5.73	12.23	2.66	5.89	14.75	11.05	4.02	6.89
Merged-chr11-118740137-2	chr11	118740033	118740233	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	20908.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	9.29	4.28	0.0	3.22	9.41	1.25	3.32	5.97	12.19	11.55	6.03	8.14
Merged-chr19-60947732-2	chr19	60947637	60947837	+	706.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	ORR1B2|LTR|ERVL-MaLR	57988.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	1.21	2.01	11.41	12.47	6.55	6.27	11.96	6.14	5.9	12.55	5.53	6.27
Merged-chr11-114987513-1	chr11	114987413	114987613	+	706.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145437, exon 2 of 4)	exon (NM_145437, exon 2 of 4)	2373.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.0	0.0	0.57	2.01	2.86	4.08	6.64	2.27	9.64	8.03	19.6	15.98
Merged-chr9-109932818-2	chr9	109932733	109932933	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	1059.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	7.27	6.04	2.85	2.82	6.14	14.11	3.65	7.82	9.44	12.55	13.06	5.64
Merged-chr9-104410445-2	chr9	104410386	104410586	+	706.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15627.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	7.27	9.81	9.13	7.24	5.73	16.31	3.99	3.25	8.06	7.03	7.03	8.77
Merged-chr11-84290934-2	chr11	84290826	84291026	+	706.6875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133360, intron 28 of 53)	intron (NM_133360, intron 28 of 53)	95488.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	2.42	5.79	1.14	6.03	6.55	11.29	2.33	7.96	8.85	12.55	11.05	5.95
Merged-chr2-84784034-1	chr2	84783934	84784134	+	706.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2C1|LTR|ERVL	-8605.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	2.02	6.29	6.85	4.02	7.36	9.72	2.99	6.87	7.08	4.52	9.55	3.13
Merged-chr11-72866713-3	chr11	72866635	72866835	+	706.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001045536, exon 24 of 55)	exon (NM_001045536, exon 24 of 55)	70509.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	7.67	6.29	5.13	13.67	1.23	2.82	6.31	8.21	3.74	3.51	9.04	7.83
Merged-chr3-55787618-1	chr3	55787518	55787718	+	706.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 40 of 57)	CpG	5108.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	4.04	6.54	13.69	4.42	6.55	8.15	5.98	7.23	6.88	9.04	4.52	3.76
Merged-chr4-126181342-2	chr4	126181237	126181437	+	706.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356455, intron 3 of 11)	intron (NM_001356455, intron 3 of 11)	-17996.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	8.88	7.29	6.85	3.62	5.73	6.9	6.98	4.43	8.06	9.54	11.56	9.08
Merged-chr17-86237571-2	chr17	86237479	86237679	+	706.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	49599.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.02	8.8	5.13	8.85	5.73	6.9	3.65	8.66	5.11	1.51	3.01	2.82
Merged-chr11-48790423-3	chr11	48790284	48790484	+	706.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9976.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	7.27	6.54	9.13	5.23	4.91	15.37	2.66	4.01	11.41	8.03	11.56	11.59
Merged-chr2-104460218-3	chr2	104460128	104460328	+	706.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010434, intron 2 of 15)	MIRb|SINE|MIR	-31288.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	4.85	4.53	10.27	10.46	22.5	11.6	9.97	16.07	12.0	9.54	18.09	8.46
Merged-chr7-111024400-3	chr7	111024288	111024488	+	706.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4563.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	7.27	5.53	5.13	6.44	8.18	7.21	3.65	7.4	14.95	6.53	12.06	7.52
Merged-chr2-57103235-1	chr2	57103135	57103335	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11803.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	1.62	1.26	3.42	0.8	4.09	6.9	4.98	9.59	2.16	1.0	4.02	3.45
Merged-chr17-5295945-2	chr17	5295849	5296049	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	122818.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	7.67	9.06	13.69	3.62	3.27	6.27	2.33	6.39	5.9	3.51	2.51	5.33
Merged-chr5-125313478-1	chr5	125313378	125313578	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	MTEb|LTR|ERVL-MaLR	27616.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.21	2.77	4.56	8.04	7.77	5.33	2.33	6.0	3.34	1.0	5.02	7.21
Merged-chr4-149586888-2	chr4	149586851	149587051	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023051, intron 1 of 18)	CpG	483.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.4	3.77	1.71	5.23	4.09	5.02	1.0	2.72	5.9	3.51	8.54	4.07
Merged-chrX-11997472-3	chrX	11997354	11997554	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83099.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.88	6.79	6.28	6.44	8.18	19.13	7.97	5.83	13.77	13.05	15.07	4.07
Merged-chr1-74134083-2	chr1	74133990	74134190	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034060, intron 8 of 11)	intron (NM_001034060, intron 8 of 11)	8549.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0.0	2.52	4.56	2.01	8.18	10.98	6.64	10.91	7.47	8.54	10.55	11.28
Merged-chr13-107692406-1	chr13	107692306	107692506	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_045900)	TTS (NR_045900)	5009.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	8.08	10.06	20.54	4.02	2.45	5.96	3.65	4.12	5.51	6.53	5.02	2.19
Merged-chr17-35420607-3	chr17	35420500	35420700	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4247.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	23.42	26.41	10.84	12.47	7.36	21.95	4.32	2.36	11.21	9.54	9.55	7.52
Merged-chr3-16004524-1	chr3	16004424	16004624	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	RLTR23|LTR|ERV1	1808.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	6.86	5.03	3.42	4.42	4.5	8.47	7.31	6.03	3.34	4.02	4.02	4.07
Merged-chr10-67051053-1	chr10	67050953	67051153	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45935.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.85	4.02	6.28	2.82	2.45	7.84	3.32	8.1	5.7	2.51	3.01	3.13
Merged-chr16-4674253-1	chr16	4674153	4674353	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 3 of 27)	intron (NM_030205, intron 3 of 27)	5467.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	2.02	1.51	0.0	0.0	6.95	1.25	4.65	8.5	2.95	0.5	2.01	5.01
Merged-chr10-81287896-1	chr10	81287796	81287996	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	-2115.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	5.65	4.53	1.14	1.61	2.45	3.76	5.65	4.12	8.65	11.05	7.03	2.82
Merged-chr15-96776872-2	chr15	96776766	96776966	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77138.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.85	3.02	9.13	8.85	7.36	4.08	9.63	6.36	8.26	2.01	10.05	1.88
Merged-chr13-91464754-2	chr13	91464666	91464866	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	3669.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.23	2.52	13.69	11.26	6.55	0.0	5.31	7.35	2.16	0.5	0.5	1.88
Merged-chr5-96791983-2	chr5	96791845	96792045	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-1440.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	12.11	6.54	3.99	10.46	2.45	2.82	5.65	3.25	3.34	7.53	3.01	1.57
Merged-chr4-59340881-2	chr4	59340781	59340981	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 12 of 16)	intron (NM_001163288, intron 12 of 16)	80830.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	3.23	4.02	6.85	4.42	3.68	5.96	5.31	6.59	5.9	5.52	17.08	8.46
Merged-chr14-105483311-4	chr14	105483205	105483405	+	706.487488	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15483.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	8.08	4.28	1.71	4.83	3.27	2.51	3.99	3.73	7.87	1.51	2.51	5.33
Merged-chr19-31972203-3	chr19	31972099	31972299	+	706.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103438.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	8.88	7.29	5.7	6.84	7.77	12.86	6.98	12.08	5.31	9.54	11.56	9.71
Merged-chr2-73554597-3	chr2	73554498	73554698	+	706.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-25111.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	8.48	11.07	9.13	8.45	6.55	9.72	4.98	14.13	16.33	9.04	13.06	8.46
Merged-chr19-37548171-2	chr19	37548074	37548274	+	706.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2244.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	11.71	13.08	10.27	8.45	11.05	8.47	8.97	6.93	10.42	8.03	5.53	1.88
Merged-chr17-45663467-3	chr17	45663343	45663543	+	706.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198167, intron 19 of 23)	intron (NM_198167, intron 19 of 23)	-4134.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	2.83	6.29	0.57	4.83	9.0	7.21	2.66	4.91	8.46	11.05	13.57	9.08
Merged-chr7-102258296-3	chr7	102258249	102258449	+	706.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8231.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	7.27	8.05	8.56	10.86	9.0	21.95	7.31	9.62	15.34	14.06	16.58	13.16
Merged-chr5-112973802-3	chr5	112973704	112973904	+	706.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 2 of 20)	intron (NM_001285806, intron 2 of 20)	41734.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	8.08	5.03	11.98	12.07	8.18	11.29	7.31	10.65	10.62	8.54	10.05	6.27
Merged-chr9-89198503-3	chr9	89198404	89198604	+	706.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-769.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.06	10.82	26.81	16.49	12.68	19.13	9.63	11.66	11.6	14.56	12.56	8.14
Merged-chr2-68983724-2	chr2	68983618	68983818	+	706.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	ID_B1|SINE|B4	122277.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.06	6.79	7.99	8.04	13.09	3.45	9.63	9.31	10.23	8.03	8.04	11.28
Merged-chr8-24431474-2	chr8	24431384	24431584	+	706.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7462.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	2.83	7.29	1.14	3.62	8.18	15.99	7.97	5.94	12.78	11.05	12.56	2.19
Merged-chr17-13052372-2	chr17	13052261	13052461	+	706.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013832)	promoter-TSS (NM_001013832)	-81.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	5.25	10.31	13.69	10.46	11.86	10.35	10.3	6.87	6.69	7.03	17.59	5.95
Merged-chr10-88228803-2	chr10	88228704	88228904	+	706.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026070, intron 5 of 6)	intron (NM_026070, intron 5 of 6)	27707.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	7.27	4.28	3.42	4.02	9.0	10.35	4.32	5.13	6.29	6.53	6.03	5.95
Merged-chr7-28014151-2	chr7	28014027	28014227	+	706.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001254951)	promoter-TSS (NM_001254951)	-12.0	NM_001254951	100043772.0	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	14.13	5.03	9.7	10.86	4.5	4.7	7.97	6.14	4.13	6.03	7.54	9.4
Merged-chr1-51918019-1	chr1	51917919	51918119	+	706.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2041.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.06	6.79	5.7	7.24	6.55	7.84	7.31	5.3	5.31	5.02	10.05	3.45
Merged-chr3-27227619-1	chr3	27227519	27227719	+	706.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	B4A|SINE|B4	44615.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	1.62	1.01	1.14	0.0	8.59	8.15	2.66	6.59	3.15	2.01	3.52	7.21
Merged-chr17-59013298-3	chr17	59013193	59013393	+	706.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026497)	promoter-TSS (NM_026497)	29.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	8.48	4.78	11.41	8.85	6.55	3.45	8.64	8.3	4.92	8.54	15.58	5.64
Merged-chr2-52377936-1	chr2	52377836	52378036	+	706.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-39138.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	4.44	6.54	6.28	6.44	4.5	9.72	1.99	1.51	12.59	12.55	12.56	6.58
Merged-chr13-20184876-3	chr13	20184800	20185000	+	706.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94393.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	9.29	8.55	3.42	5.23	8.59	12.23	7.64	3.2	12.78	12.55	9.04	6.89
Merged-chr1-150167351-3	chr1	150167274	150167474	+	706.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2426.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	9.29	3.02	15.97	9.65	4.91	9.09	13.95	10.26	12.78	13.56	12.06	10.34
Merged-chr10-127103872-3	chr10	127103764	127103964	+	706.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	17296.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	9.69	6.54	16.54	7.24	12.68	10.98	7.64	11.41	15.34	13.56	11.56	9.4
Merged-chr5-139789678-2	chr5	139789588	139789788	+	706.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1848.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	7.67	4.78	5.13	12.87	13.5	9.09	8.97	17.8	2.36	5.02	1.0	3.45
Merged-chr8-71366857-2	chr8	71366745	71366945	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-3.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	5.25	12.58	1.71	6.44	8.59	8.15	11.63	4.93	11.6	9.54	15.58	8.14
Merged-chr5-28065694-2	chr5	28065589	28065789	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5723.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	2.83	4.02	7.42	5.63	13.5	8.47	8.3	11.78	4.13	6.53	11.56	5.01
Merged-chr19-11740345-2	chr19	11740254	11740454	+	706.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7205.0	NM_008118	14603.0	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	4.04	7.04	5.7	9.25	11.86	8.47	14.28	8.86	5.51	4.02	6.03	4.7
Merged-chr18-80204733-2	chr18	80204642	80204842	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-2056.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	7.67	1.51	7.99	3.22	8.59	3.76	2.33	6.25	11.01	11.05	16.08	9.08
Merged-chr11-97771616-2	chr11	97771516	97771716	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028156, exon 3 of 3)	exon (NM_028156, exon 3 of 3)	4302.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	7.27	3.02	3.99	8.85	10.64	13.17	5.31	6.53	12.19	5.52	12.06	9.4
Merged-chr2-75639766-1	chr2	75639666	75639866	+	706.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-19493.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.81	0.0	2.28	0.0	0.0	1.88	2.66	1.21	8.06	10.54	12.06	9.71
Merged-chr10-14216745-2	chr10	14216649	14216849	+	706.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	250370.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.08	3.52	5.7	12.87	2.86	6.27	4.98	8.75	2.75	2.51	3.52	3.76
Merged-chr8-82351497-3	chr8	82351402	82351602	+	706.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	B3A|SINE|B2	51084.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	8.48	9.31	3.42	6.03	16.77	16.62	7.31	8.3	25.96	10.04	15.07	7.52
Merged-chr16-17409230-3	chr16	17409112	17409312	+	706.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-2898.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	7.67	13.33	7.42	4.83	10.23	23.83	12.95	9.14	11.41	2.51	11.56	2.82
Merged-chr17-6986276-1	chr17	6986176	6986376	+	706.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026611, intron 4 of 8).2	intron (NM_026611, intron 4 of 8).2	7416.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	3.63	3.77	2.28	2.01	10.64	17.87	8.64	7.04	6.49	11.05	2.51	0.63
Merged-chr6-51510239-3	chr6	51510135	51510335	+	706.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13668.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.67	8.8	8.56	5.23	12.27	7.21	3.65	9.87	5.11	10.04	12.06	9.08
Merged-chr10-77626937-3	chr10	77626817	77627017	+	706.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	4596.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	4.85	6.79	19.4	5.23	8.59	5.02	4.32	8.33	8.65	5.52	7.03	8.46
Merged-chr7-106557201-2	chr7	106557102	106557302	+	706.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	87443.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	10.09	9.06	10.27	16.49	6.55	14.74	11.29	6.64	0.79	0.0	0.0	1.25
Merged-chr2-58797089-3	chr2	58796993	58797193	+	706.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41909.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	6.86	9.81	9.13	13.27	9.41	9.72	5.31	8.13	12.19	3.01	12.06	9.08
Merged-chr2-35433637-3	chr2	35433542	35433742	+	706.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	27807.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.86	4.53	8.56	9.65	7.36	10.03	5.31	11.1	10.03	2.51	13.06	10.02
Merged-chr13-92526121-2	chr13	92526018	92526218	+	706.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173392, intron 1 of 17)	intron (NM_173392, intron 1 of 17)	4692.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	7.27	6.04	5.7	8.85	9.41	15.37	7.97	10.65	4.92	3.01	11.05	5.33
Merged-chr15-60824293-2	chr15	60824196	60824396	+	706.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_030696, exon 1 of 3)	non-coding (NR_030696, exon 1 of 3)	784.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	12.11	4.28	13.69	11.26	6.14	6.9	1.66	6.06	8.46	7.03	8.54	4.39
Merged-chrX-48427830-3	chrX	48427726	48427926	+	706.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	35306.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	2.83	6.04	4.56	6.44	7.77	8.15	8.3	11.52	15.93	8.03	20.6	10.02
Merged-chr15-36323889-3	chr15	36323777	36323977	+	706.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40730.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	8.48	8.55	5.7	3.22	9.82	10.66	10.96	10.21	6.1	5.02	7.03	7.52
Merged-chr1-191173954-1	chr1	191173854	191174054	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	-9137.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	10.5	16.1	4.56	9.65	5.32	13.8	0.33	0.7	6.29	8.54	3.01	2.51
Merged-chr7-67217362-2	chr7	67217271	67217471	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131044, intron 2 of 2)	intron (NR_131044, intron 2 of 2)	5087.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	8.08	7.8	6.28	6.84	4.09	9.72	5.65	5.52	5.11	3.51	6.53	7.21
Merged-chr6-34035504-1	chr6	34035404	34035604	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028886, intron 1 of 19)	intron (NM_028886, intron 1 of 19)	6056.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.83	2.52	2.28	1.21	0.41	7.84	1.33	6.17	3.34	6.03	3.52	0.94
Merged-chr2-72373068-1	chr2	72372968	72373168	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	87367.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.83	2.01	1.14	2.82	1.64	2.2	1.66	0.36	7.28	4.02	7.54	4.39
Merged-chr8-86884723-2	chr8	86884629	86884829	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	CpG	529.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	8.48	7.29	11.41	12.87	11.45	7.53	15.94	7.85	11.8	15.06	15.07	10.96
Merged-chr9-57517307-2	chr9	57517210	57517410	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3922.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.65	4.78	5.13	8.04	6.55	9.72	2.66	5.02	13.37	6.03	7.54	7.52
Merged-chr14-63124909-1	chr14	63124809	63125009	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	2447.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.65	5.28	1.14	8.85	9.0	8.15	6.31	4.6	5.51	3.51	7.54	6.58
Merged-chr7-100944055-1	chr7	100943955	100944155	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-11894.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	31.9	9.56	13.69	7.64	14.32	11.6	14.62	8.72	11.6	10.04	7.54	4.7
Merged-chr4-155220025-1	chr4	155219925	155220125	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	2510.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.25	6.54	2.85	4.83	6.95	7.53	7.31	6.5	3.74	1.0	5.02	2.51
Merged-chr6-4808823-3	chr6	4808743	4808943	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89-int|LTR|ERV1	61537.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	8.48	8.3	12.55	8.45	9.41	14.11	16.61	12.45	13.18	5.52	8.04	7.21
Merged-chr9-100439566-1	chr9	100439466	100439666	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46907.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.42	4.53	9.13	4.83	7.77	2.82	3.32	5.66	5.7	3.51	4.02	5.64
Merged-chr7-100460900-2	chr7	100460790	100460990	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017985, intron 32 of 32)	ORR1E|LTR|ERVL-MaLR	-12101.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.27	8.3	7.99	6.44	11.05	7.84	9.3	12.84	8.26	10.04	3.01	14.1
Merged-chr7-56013674-1	chr7	56013574	56013774	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153578, intron 1 of 4)	L1MB3|LINE|L1	5899.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	5.65	7.04	5.7	5.63	7.77	9.09	15.28	6.03	1.57	0.0	1.51	0.0
Merged-chr6-119388224-1	chr6	119388124	119388324	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	CpG	510.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	9.29	3.02	10.84	14.48	3.68	7.53	11.96	6.0	5.7	12.55	4.02	5.95
Merged-chr4-102104700-1	chr4	102104600	102104800	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117860.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	1.62	0.75	7.42	0.0	1.23	0.63	0.66	3.2	9.64	6.53	12.56	2.51
Merged-chr10-127542586-1	chr10	127542486	127542686	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008512, exon 78 of 89)	exon (NM_008512, exon 78 of 89)	-8027.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.85	4.02	0.0	1.21	2.05	7.21	7.31	4.85	3.34	5.02	2.01	7.21
Merged-chr2-150826295-1	chr2	150826195	150826395	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	16275.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.08	2.01	12.55	9.65	5.32	0.31	2.99	4.46	2.16	2.51	6.53	6.58
Merged-chr14-70889177-2	chr14	70889075	70889275	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-932.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	11.31	8.55	4.56	16.09	6.14	8.47	2.99	6.48	5.9	2.01	4.02	2.82
Merged-chr2-166009707-1	chr2	166009607	166009807	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	ID_B1|SINE|B4	17070.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.86	1.01	6.85	3.22	6.55	4.08	1.33	8.3	8.06	4.52	4.02	2.51
Merged-chr10-111544844-1	chr10	111544744	111544944	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	38558.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	2.02	2.01	4.56	12.47	7.77	8.47	8.64	4.77	7.28	7.03	6.53	2.51
Merged-chr5-74960531-1	chr5	74960431	74960631	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	11337.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.81	5.28	0.0	2.82	2.45	4.08	3.99	4.18	2.16	3.01	0.0	0.63
Merged-chr13-89539706-1	chr13	89539606	89539806	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013500)	promoter-TSS (NM_013500)	-930.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.63	5.79	6.85	5.23	2.86	2.2	5.31	2.8	10.62	8.54	7.54	3.76
Merged-chr6-54954481-1	chr6	54954381	54954581	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	17180.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	1.62	0.0	3.42	0.0	0.82	0.94	0.0	0.03	12.78	8.54	8.54	8.46
Merged-chr4-95046614-1	chr4	95046514	95046714	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5608.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	10.5	4.28	2.85	4.02	9.0	12.54	2.33	3.79	4.13	6.03	1.51	1.57
Merged-chr16-29734482-1	chr16	29734382	29734582	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155148.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	7.27	1.51	12.55	2.01	7.77	3.14	1.99	6.62	4.13	8.03	3.52	2.51
Merged-chr17-73034199-1	chr17	73034099	73034299	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73786.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	12.52	7.55	6.85	9.65	8.59	5.64	6.31	18.64	11.41	7.03	15.58	5.95
Merged-chr11-6411885-3	chr11	6411785	6411985	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3985.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	15.34	4.02	11.98	10.05	11.86	8.78	3.99	9.95	10.42	3.51	10.55	6.27
Merged-chr12-59052629-1	chr12	59052529	59052729	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001306217, intron 1 of 4)	Lx9|LINE|L1	8843.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	4.04	3.52	2.28	4.42	4.09	2.51	5.98	4.96	2.36	5.02	4.02	6.89
Merged-chr10-26576381-1	chr10	26576281	26576481	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98270.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.21	2.52	5.7	2.41	0.82	0.63	3.32	1.91	12.39	8.03	12.56	6.89
Merged-chr17-35434916-1	chr17	35434816	35435016	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4239.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	4.85	5.03	1.14	4.83	4.91	1.88	1.66	0.0	10.42	12.05	6.53	4.7
Merged-chr10-111994734-1	chr10	111994634	111994834	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	URR1B|DNA|hAT-Charlie	2530.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	4.04	7.8	1.14	5.23	2.45	6.27	5.65	11.38	7.08	4.52	14.07	2.51
Merged-chr8-108956693-1	chr8	108956593	108956793	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007496, exon 10 of 10)	exon (NM_007496, exon 10 of 10)	19833.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	1.62	0.5	0.57	0.0	2.45	0.63	1.66	3.2	10.42	6.03	5.02	6.58
Merged-chr14-20828383-1	chr14	20828283	20828483	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-8279.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.85	3.52	2.85	4.83	9.41	11.29	1.0	6.53	6.88	5.02	10.55	14.41
Merged-chr13-63038045-1	chr13	63037945	63038145	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 3 of 15)	intron (NM_001289926, intron 3 of 15)	73152.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.42	4.53	3.42	0.0	0.82	3.76	7.64	4.37	0.79	1.51	0.0	2.82
Merged-chrX-73228671-2	chrX	73228569	73228769	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007978, exon 1 of 1)	exon (NM_007978, exon 1 of 1)	363.0	NM_007978	14070.0	Mm.165807	NM_007978	ENSMUSG00000078317	F8a	AI852759|DXUcsf1|F8a1	factor 8-associated gene A	protein-coding	6.86	11.07	8.56	7.64	9.41	5.64	11.96	7.51	7.87	13.56	9.55	6.89
Merged-chr18-32485163-1	chr18	32485063	32485263	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74871.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	1.21	2.26	5.13	3.22	7.36	10.98	6.31	7.23	4.72	4.02	10.05	0.63
Merged-chr12-79797243-3	chr12	79797148	79797348	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 9 of 10)	intron (NM_009014, intron 9 of 10)	127485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	11.71	5.03	2.28	11.66	11.86	5.02	9.3	9.93	7.87	6.53	13.57	11.28
Merged-chr9-56168140-1	chr9	56168040	56168240	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-7070.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	4.44	3.52	0.0	0.8	7.36	9.09	4.65	5.94	3.34	1.0	1.0	1.57
Merged-chr11-114954275-1	chr11	114954175	114954375	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	6142.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0.4	0.5	1.71	0.8	0.0	0.0	0.0	0.56	2.16	1.0	1.0	5.95
Merged-chr11-100695119-1	chr11	100695019	100695219	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030150, exon 13 of 13)	3' UTR (NM_030150, exon 13 of 13)	9152.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	4.85	4.02	2.28	2.41	4.91	8.78	1.33	4.37	10.42	7.03	11.56	4.7
Merged-chr5-3928818-1	chr5	3928718	3928918	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194462, intron 1 of 47)	intron (NM_194462, intron 1 of 47)	632.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	4.44	7.8	9.7	3.22	5.32	3.76	9.3	4.68	6.29	6.03	8.04	4.7
Merged-chr5-17982972-1	chr5	17982872	17983072	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	20402.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	1.51	1.14	0.0	0.41	5.64	4.98	7.91	0.59	1.51	2.01	0.0
Merged-chr10-19938522-1	chr10	19938422	19938622	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	3996.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	2.77	1.14	2.01	0.82	3.14	0.0	1.15	0.59	1.0	0.5	0.31
Merged-chr9-108452739-3	chr9	108452603	108452803	+	705.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359428)	promoter-TSS (NM_001359428)	98.0	NM_001359428	78267.0	Mm.283194	NM_030075	ENSMUSG00000032609	Klhdc8b	4931406O17Rik	kelch domain containing 8B	protein-coding	7.27	7.55	6.28	2.82	5.32	7.53	13.62	5.97	4.52	16.57	10.05	9.4
Merged-chr16-16526305-3	chr16	16526228	16526428	+	705.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1083.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	5.25	4.28	10.84	5.23	4.09	5.02	4.98	9.06	12.59	11.05	11.56	10.65
Merged-chr8-26066640-3	chr8	26066547	26066747	+	705.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207659, intron 13 of 21)	intron (NM_207659, intron 13 of 21)	-15962.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	4.44	9.31	9.13	7.24	7.36	8.47	7.97	6.22	8.46	10.04	3.52	5.95
Merged-chr7-127991982-3	chr7	127991894	127992094	+	705.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023258, exon 3 of 3)	3' UTR (NM_023258, exon 3 of 3)	1873.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	19.38	12.32	13.12	5.63	8.59	15.99	1.99	1.07	14.95	18.08	8.04	7.21
Merged-chr11-25862972-2	chr11	25862878	25863078	+	705.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-339262.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	4.04	2.01	1.14	1.21	8.59	11.29	8.97	6.56	7.87	12.05	6.53	7.21
Merged-chr2-16359545-2	chr2	16359444	16359644	+	705.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	3240.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	8.08	6.29	9.7	6.03	10.23	13.17	5.65	11.64	9.24	3.01	12.06	2.82
Merged-chr17-31994808-2	chr17	31994710	31994910	+	705.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39698.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	2.02	8.55	14.83	9.25	13.91	3.45	7.31	5.38	5.31	5.52	7.03	4.39
Merged-chrX-166661444-2	chrX	166661361	166661561	+	705.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_046015)	promoter-TSS (NR_046015)	-564.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	8.48	8.3	4.56	8.85	13.09	6.59	3.65	2.41	8.85	5.52	11.56	5.01
Merged-chrX-11718980-2	chrX	11718894	11719094	+	705.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	361559.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.48	12.83	14.83	8.85	4.5	6.59	2.66	7.26	5.9	4.02	6.03	4.7
Merged-chr15-34469888-2	chr15	34469768	34469968	+	705.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	16556.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	2.02	4.53	2.85	3.22	6.55	5.33	3.32	4.63	11.8	12.05	17.59	5.95
Merged-chr15-77832230-3	chr15	77832134	77832334	+	705.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9941.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.06	6.79	1.14	3.22	14.32	13.17	11.63	5.55	14.55	17.07	12.06	3.45
Merged-chr9-99195270-2	chr9	99195143	99195343	+	705.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	41996.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	8.48	4.28	5.7	10.05	8.59	6.59	3.65	9.08	10.62	8.03	6.03	8.46
Merged-chr18-21122108-3	chr18	21122019	21122219	+	705.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49775.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	5.25	6.29	11.41	15.69	12.27	7.53	14.95	11.05	8.46	3.51	7.54	8.46
Merged-chr3-75297651-2	chr3	75297565	75297765	+	705.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27587.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.23	3.52	7.42	4.42	6.14	4.7	1.99	8.83	9.83	10.54	15.07	6.27
Merged-chr1-36918138-2	chr1	36918035	36918235	+	705.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	21392.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.65	8.3	7.99	8.04	7.77	12.23	3.32	6.39	7.87	5.02	6.53	3.45
Merged-chr4-62667790-3	chr4	62667689	62667889	+	705.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	L2|LINE|L2	-6185.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	1.62	8.55	6.85	10.05	13.91	13.8	9.63	7.32	12.39	13.05	17.59	7.21
Merged-chr6-38761464-3	chr6	38761354	38761554	+	705.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	75857.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	8.48	6.54	10.84	14.48	9.0	11.6	8.64	14.36	12.0	11.55	14.57	5.95
Merged-chr4-46356952-3	chr4	46356835	46357035	+	705.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12741.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	8.88	6.04	6.28	6.84	12.68	11.29	7.31	5.33	11.41	16.07	25.63	7.83
Merged-chr13-14068231-3	chr13	14068147	14068347	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194262, intron 2 of 23)	T-rich|Low_complexity|Low_complexity	4463.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	4.85	6.04	6.85	10.86	12.68	4.7	5.65	15.34	6.88	17.07	11.05	10.96
Merged-chr11-43653938-1	chr11	43653838	43654038	+	705.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-28060.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	3.23	12.32	5.7	2.82	5.73	11.6	4.32	5.38	9.44	6.03	8.54	2.19
Merged-chr17-25014261-3	chr17	25014179	25014379	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020608, intron 1 of 20)	CpG	951.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	5.65	6.29	6.85	3.22	9.82	15.68	2.33	5.94	7.08	5.02	9.04	5.64
Merged-chr2-137080673-1	chr2	137080573	137080773	+	705.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013822)	TTS (NM_013822)	35847.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.02	1.26	4.56	2.01	3.27	11.92	7.31	7.12	0.79	7.03	10.55	1.57
Merged-chr10-34118627-3	chr10	34118524	34118724	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9348.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.04	7.04	13.69	10.46	6.55	8.78	5.31	10.23	9.64	9.54	11.56	5.01
Merged-chr2-167660138-3	chr2	167660033	167660233	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	1411.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	4.04	8.55	8.56	12.87	8.18	5.96	11.96	7.91	9.44	9.04	5.02	5.33
Merged-chr13-105216631-2	chr13	105216552	105216752	+	705.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	76362.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.23	3.27	9.13	6.84	4.5	7.53	5.65	7.32	6.1	1.0	7.54	6.89
Merged-chr11-88087116-2	chr11	88087014	88087214	+	705.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10944.0	NR_045499	70393.0	Mm.386799	NR_045499	ENSMUSG00000018378	2210416O15Rik	-	RIKEN cDNA 2210416O15 gene	ncRNA	2.42	4.53	15.97	3.62	8.59	7.21	4.98	4.32	12.78	7.03	12.56	7.52
Merged-chr1-134782896-2	chr1	134782814	134783014	+	705.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	20807.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	13.33	10.82	12.55	14.48	5.73	3.14	2.33	5.19	1.38	1.0	2.51	0.0
Merged-chr11-4521108-2	chr11	4521001	4521201	+	705.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	73714.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.65	4.02	7.99	10.05	8.59	3.76	8.64	9.67	12.0	5.02	10.05	6.89
Merged-chr1-171221049-3	chr1	171220945	171221145	+	705.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-519.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	8.48	9.81	9.7	13.67	5.73	14.42	10.96	4.57	15.14	16.57	10.55	11.28
Merged-chr9-121248194-2	chr9	121248112	121248312	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177589, intron 16 of 36)	intron (NM_177589, intron 16 of 36)	28960.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	5.65	5.53	3.42	3.22	9.82	5.33	1.66	6.87	12.98	9.04	8.54	11.9
Merged-chr17-50994311-2	chr17	50994228	50994428	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	RLTR14-int|LTR|ERV1	165050.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	10.5	5.79	2.85	0.4	12.27	7.21	3.65	6.64	10.62	14.56	10.55	4.7
Merged-chr5-121900721-2	chr5	121900625	121900825	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	51728.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	2.02	7.04	9.13	14.88	5.73	5.02	11.29	8.69	1.97	2.01	2.51	3.13
Merged-chr3-104431857-1	chr3	104431757	104431957	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80061.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.63	3.02	3.42	4.02	5.32	5.96	9.63	7.32	11.41	0.0	8.04	5.33
Merged-chr18-64515277-1	chr18	64515177	64515377	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142950, intron 2 of 14)	intron (NM_001142950, intron 2 of 14)	1280.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	4.44	2.52	4.56	0.8	1.64	4.39	7.31	5.44	6.88	1.0	5.02	4.7
Merged-chr10-99133490-3	chr10	99133424	99133624	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	25389.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	9.29	7.29	9.7	5.23	4.5	9.09	4.65	16.6	7.87	9.04	11.05	7.83
Merged-chr17-10444748-1	chr17	10444648	10444848	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	-11468.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.81	1.01	3.42	2.01	4.5	6.27	4.65	4.23	1.18	2.51	1.0	1.25
Merged-chr10-94054474-2	chr10	94054373	94054573	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	18472.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	1.21	9.56	9.7	1.21	4.09	6.9	2.33	7.77	3.34	6.53	3.52	4.7
Merged-chr4-136971182-2	chr4	136971088	136971288	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14372.0	NM_007939	13842.0	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	12.92	6.54	15.97	5.63	4.91	10.66	6.98	7.15	5.11	3.51	6.53	8.77
Merged-chr13-41263487-2	chr13	41263388	41263588	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13644.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	2.83	4.78	12.55	8.45	5.32	6.59	7.97	8.92	10.82	12.05	9.55	4.07
Merged-chr16-91596498-2	chr16	91596385	91596585	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1195.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	7.27	4.28	5.13	7.24	6.95	5.64	3.99	3.36	8.26	6.53	16.58	8.77
Merged-chr4-136907239-2	chr4	136907149	136907349	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8405.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	6.86	8.3	3.99	2.82	5.73	6.59	1.33	4.26	13.37	6.53	6.03	3.45
Merged-chr17-36162551-2	chr17	36162437	36162637	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033517)	TTS (NR_033517)	6000.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	5.25	2.77	2.28	1.61	0.82	6.9	1.99	7.51	11.21	4.52	14.57	4.7
Merged-chr12-79359027-1	chr12	79358927	79359127	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	61676.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	2.42	6.29	2.85	2.82	7.36	12.23	6.98	6.9	8.26	7.53	7.03	2.82
Merged-chr10-77976601-2	chr10	77976501	77976701	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2049.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	3.23	3.27	6.28	2.41	3.68	5.64	3.99	5.66	11.01	13.56	2.51	2.19
Merged-chr1-97630252-2	chr1	97630161	97630361	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.23	2.52	4.56	8.04	10.64	11.29	7.64	17.69	7.28	2.51	14.07	9.4
Merged-chr12-21318346-2	chr12	21318247	21318447	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026347, intron 3 of 5)	intron (NM_026347, intron 3 of 5)	1955.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	2.83	9.81	10.27	6.44	3.68	12.23	2.99	7.32	7.08	11.55	5.02	6.89
Merged-chr15-41751598-3	chr15	41751454	41751654	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-37441.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.02	8.8	3.42	1.21	8.18	2.82	5.65	7.51	7.08	4.02	3.01	7.83
Merged-chr11-95337491-2	chr11	95337359	95337559	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	CpG	441.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	8.08	5.28	2.28	2.82	10.64	8.47	7.31	7.71	5.51	8.03	4.02	11.28
Merged-chr12-117479961-3	chr12	117479880	117480080	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36499.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.27	7.29	2.85	4.83	4.91	10.66	5.65	6.56	10.62	9.54	10.55	5.95
Merged-chr12-77000277-1	chr12	77000177	77000377	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38029.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.67	4.53	5.7	6.03	6.14	1.57	6.98	8.44	5.31	7.03	8.04	2.51
Merged-chr13-30744682-1	chr13	30744582	30744782	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4551.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	7.27	0.75	2.28	4.02	13.5	6.27	2.99	7.88	5.11	8.54	3.52	7.21
Merged-chr15-73350514-3	chr15	73350427	73350627	+	705.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	72664.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	8.08	8.8	9.13	12.47	7.77	21.01	8.3	18.25	12.59	12.55	9.04	13.16
Merged-chr17-29024575-3	chr17	29024497	29024697	+	705.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8063.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	8.08	7.55	6.85	6.03	1.64	24.77	11.63	8.61	12.19	10.54	6.53	6.27
Merged-chr16-13197486-3	chr16	13197412	13197612	+	705.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58969.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	7.27	6.79	7.42	12.87	11.45	6.59	3.65	8.72	4.72	10.54	4.52	9.4
Merged-chr9-20975856-3	chr9	20975750	20975950	+	705.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	943.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	11.31	7.8	9.13	4.02	4.09	17.25	6.98	4.51	14.36	14.06	14.07	11.28
Merged-chr9-7789206-3	chr9	7789110	7789310	+	705.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	4820.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	10.5	5.28	6.28	11.26	8.59	7.21	17.27	13.85	6.1	9.04	8.54	6.58
Merged-chr16-65371122-2	chr16	65371026	65371226	+	705.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149503.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	7.27	5.03	4.56	6.03	6.95	10.35	3.32	6.79	9.64	14.06	12.56	9.4
Merged-chr2-23097221-3	chr2	23097099	23097299	+	705.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355638, intron 10 of 13)	MTEb|LTR|ERVL-MaLR	28127.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	12.11	9.31	27.38	23.73	2.05	6.9	3.99	9.67	9.44	11.05	10.55	12.53
Merged-chr6-72552266-2	chr6	72552159	72552359	+	705.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	MER31A|LTR|ERV1	2612.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	2.42	4.02	3.42	6.03	4.09	6.59	8.97	10.63	8.06	4.52	9.55	8.46
Merged-chr19-41914171-2	chr19	41914007	41914207	+	705.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	2236.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	3.23	2.52	7.42	2.41	0.41	2.82	3.32	3.67	4.13	7.53	7.03	5.64
Merged-chr12-75684246-2	chr12	75684130	75684330	+	705.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-14693.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	4.85	0.75	9.13	16.89	9.41	10.35	17.94	3.28	5.31	5.02	19.6	7.21
Merged-chr9-40756600-3	chr9	40756490	40756690	+	705.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-44683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.08	6.04	5.7	4.42	11.05	7.21	1.33	5.07	11.41	11.05	10.05	7.21
Merged-chr7-138919230-3	chr7	138919127	138919327	+	705.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9721.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	14.54	5.53	9.7	6.84	8.18	8.47	6.31	15.98	10.82	10.54	14.57	7.52
Merged-chr7-16950361-3	chr7	16950270	16950470	+	705.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5688.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	1.21	5.79	6.85	4.42	10.64	8.47	5.31	9.22	10.62	6.03	21.1	11.28
Merged-chr11-4194844-2	chr11	4194780	4194980	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8047.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	3.23	2.77	5.13	4.42	11.86	5.02	3.32	5.97	7.28	12.55	13.06	7.52
Merged-chr15-58415933-2	chr15	58415884	58416084	+	705.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	516.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	10.5	3.52	5.7	10.46	3.68	2.51	6.31	6.53	11.01	8.54	5.02	11.9
Merged-chr1-89463311-1	chr1	89463211	89463411	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	8500.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.23	2.26	0.57	3.62	7.77	5.64	5.98	5.5	4.92	3.51	7.54	2.19
Merged-chr6-129213742-2	chr6	129213661	129213861	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24284.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.46	2.01	8.56	11.66	6.55	2.51	4.32	11.92	12.98	4.02	13.06	7.83
Merged-chr2-118587836-2	chr2	118587735	118587935	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-10376.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	3.23	5.28	3.99	3.22	10.64	7.53	3.65	4.23	9.83	10.04	9.55	4.39
Merged-chr12-16874370-2	chr12	16874317	16874517	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20561.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.25	1.76	4.56	2.82	8.18	5.33	1.0	6.08	5.11	3.01	2.51	7.21
Merged-chr12-75738665-2	chr12	75738562	75738762	+	705.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2933.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	8.08	3.52	7.99	8.45	12.68	4.39	3.99	10.74	7.67	7.03	3.01	4.07
Merged-chr17-86770002-3	chr17	86769872	86770072	+	705.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	16108.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.85	5.79	3.99	8.85	7.77	9.41	17.61	16.6	3.93	7.53	8.04	4.07
Merged-chr17-49422254-3	chr17	49422167	49422367	+	705.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-6097.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	8.48	12.32	9.13	3.22	9.41	41.71	7.31	7.63	19.08	13.56	12.56	4.39
Merged-chr3-104961714-3	chr3	104961629	104961829	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009520)	promoter-TSS (NM_009520)	-20.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.65	12.32	7.42	6.03	4.91	4.08	10.96	6.14	5.11	23.6	11.05	7.21
Merged-chr9-107769703-3	chr9	107769579	107769779	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153191, intron 1 of 23)	intron (NR_153191, intron 1 of 23)	1323.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	11.31	7.29	7.42	8.85	10.64	12.54	3.32	7.96	10.62	13.05	9.55	5.95
Merged-chr11-82779055-3	chr11	82778946	82779146	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126067)	TTS (NR_126067)	1996.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	1.62	3.27	7.99	11.26	7.77	8.15	7.64	9.42	12.39	6.03	8.54	9.71
Merged-chr11-118404671-3	chr11	118404576	118404776	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2717.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	4.85	21.63	9.13	3.22	5.32	22.89	1.33	4.79	26.75	23.6	16.08	17.86
Merged-chr8-70540588-3	chr8	70540448	70540648	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	873.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.23	7.55	4.56	6.44	9.82	6.9	1.99	8.07	13.18	10.54	12.06	8.14
Merged-chr17-69421782-2	chr17	69421684	69421884	+	705.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5337.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	3.23	7.04	2.28	5.63	7.77	5.02	2.99	4.93	16.52	6.53	11.56	3.45
Merged-chr9-75404926-2	chr9	75404845	75405045	+	705.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015806, intron 1 of 5)	MTD|LTR|ERVL-MaLR	4414.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	5.65	2.26	3.42	2.01	8.18	5.33	4.32	7.93	9.83	11.05	16.58	5.95
Merged-chr6-39508268-2	chr6	39508176	39508376	+	705.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172477, exon 3 of 19)	exon (NM_172477, exon 3 of 19)	49558.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.23	4.28	13.69	10.05	8.18	8.47	12.95	26.22	6.49	9.04	7.03	8.46
Merged-chr6-5382731-2	chr6	5382621	5382821	+	705.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023048)	promoter-TSS (NM_023048)	-665.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	5.65	5.53	2.28	5.63	6.14	1.88	3.99	6.62	16.52	14.06	17.59	12.53
Merged-chr10-40384019-3	chr10	40383933	40384133	+	705.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	34725.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	11.31	10.06	5.7	8.04	7.36	1.88	4.65	9.17	9.83	6.53	5.02	6.27
Merged-chr8-25068322-2	chr8	25068170	25068370	+	705.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-29308.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	12.52	5.79	1.71	1.61	9.82	4.7	6.98	6.28	9.83	7.03	5.02	7.52
Merged-chr2-102882360-2	chr2	102882274	102882474	+	705.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	19291.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.25	7.8	8.56	2.41	5.32	10.03	6.64	5.27	10.03	12.05	8.54	10.02
Merged-chr7-118487200-2	chr7	118487087	118487287	+	705.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4788.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.25	9.81	7.99	7.64	7.77	5.64	10.63	7.32	6.69	8.54	2.51	7.52
Merged-chr1-43472148-3	chr1	43472046	43472246	+	705.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	26395.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	8.08	8.8	3.42	8.45	12.68	15.05	6.31	5.61	12.78	16.57	7.03	11.28
Merged-chr2-103906763-2	chr2	103906676	103906876	+	705.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131913, intron 3 of 6)	intron (NR_131913, intron 3 of 6)	5825.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	2.02	1.76	4.56	5.63	6.95	8.47	4.98	7.74	9.64	11.55	12.06	4.7
Merged-chr11-51582929-3	chr11	51582823	51583023	+	705.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-1834.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	14.13	10.82	9.13	10.05	10.23	15.68	3.65	4.26	9.83	15.57	21.61	9.4
Merged-chr3-83823973-3	chr3	83823887	83824087	+	705.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	17621.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.67	7.04	9.13	12.47	11.45	9.72	8.64	9.06	13.18	8.54	10.55	8.77
Merged-chr19-59344476-3	chr19	59344402	59344602	+	705.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	1278.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	13.73	6.79	12.55	8.04	11.05	8.47	2.99	12.03	8.85	8.03	8.04	5.95
Merged-chr6-51612633-3	chr6	51612532	51612732	+	705.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	67339.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	8.48	10.82	9.7	7.64	9.41	12.86	7.64	14.16	6.88	9.54	10.55	9.4
Merged-chr5-63859052-2	chr5	63858948	63859148	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	46553.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	2.83	7.55	3.42	7.24	6.14	9.41	5.98	10.12	6.1	5.52	12.06	3.45
Merged-chr2-131095047-1	chr2	131094947	131095147	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8282.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	14.13	6.79	3.42	2.41	9.0	6.59	0.66	6.14	8.06	8.03	7.03	5.01
Merged-chr6-97281921-1	chr6	97281821	97282021	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29141.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.42	7.04	4.56	3.62	1.23	5.96	5.65	1.71	3.93	1.51	4.02	4.07
Merged-chr16-22043985-1	chr16	22043885	22044085	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027488, intron 15 of 16)	intron (NR_027488, intron 15 of 16)	34501.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	1.51	1.14	2.41	3.27	7.53	2.33	7.4	0.59	0.0	1.0	4.7
Merged-chr4-99175344-1	chr4	99175244	99175444	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18590.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.81	2.01	2.85	5.63	2.45	0.63	7.97	5.41	0.98	0.0	0.0	1.88
Merged-chr2-75650592-1	chr2	75650492	75650692	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8667.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.81	4.02	1.71	4.42	0.0	0.94	1.33	2.3	8.65	4.02	12.06	7.52
Merged-chr10-122105607-1	chr10	122105507	122105707	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8505.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	9.69	4.02	4.56	2.82	7.36	5.96	1.33	7.29	10.03	5.02	10.05	4.07
Merged-chr7-118702267-1	chr7	118702167	118702367	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	B1_Mur1|SINE|Alu	3471.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	3.63	1.01	1.14	0.0	0.41	4.39	0.66	2.41	6.88	4.52	1.51	9.08
Merged-chr3-109273239-2	chr3	109273154	109273354	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67429.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.83	4.02	5.13	4.02	9.0	6.59	1.66	5.97	12.78	13.05	3.52	5.95
Merged-chr12-85703661-3	chr12	85703563	85703763	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16943.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	16.96	7.04	6.85	4.83	9.82	4.08	1.99	4.65	15.54	8.03	18.09	4.7
Merged-chr7-4966708-1	chr7	4966608	4966808	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001200041, exon 4 of 4)	3' UTR (NM_001200041, exon 4 of 4)	-2360.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	5.65	5.79	4.56	2.01	6.55	15.99	7.97	1.79	4.13	0.0	9.04	2.51
Merged-chrX-12240564-1	chrX	12240464	12240664	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80209.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	6.06	1.01	3.42	5.23	6.14	2.51	5.65	1.04	6.49	2.51	2.01	1.25
Merged-chr16-76053321-1	chr16	76053221	76053421	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	52537.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	1.01	2.85	5.23	4.09	7.84	4.32	5.05	7.67	2.01	8.54	3.13
Merged-chr10-81133888-1	chr10	81133788	81133988	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-2383.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.23	6.29	2.28	4.42	3.68	5.96	5.65	1.01	9.64	7.03	10.55	8.77
Merged-chr10-25196512-2	chr10	25196405	25196605	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	3665.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.42	0.75	8.56	9.25	4.91	4.39	8.97	8.38	3.93	1.0	10.05	2.51
Merged-chr17-72604732-1	chr17	72604632	72604832	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007439)	promoter-TSS (NM_007439)	-425.0	NM_007439	11682.0	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	1.21	2.01	1.14	1.61	4.09	2.2	5.31	8.19	4.13	3.51	6.03	3.13
Merged-chr1-6499047-2	chr1	6498957	6499157	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001244693, intron 2 of 22)	L1MA9|LINE|L1	11826.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	16.96	11.32	12.55	4.02	5.32	10.35	3.32	2.27	8.46	5.02	15.07	7.83
Merged-chr3-152212037-1	chr3	152211937	152212137	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355374, intron 1 of 19)	intron (NM_001355374, intron 1 of 19)	1615.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	3.63	6.29	5.7	3.22	2.45	1.57	0.66	2.72	4.33	3.51	5.02	3.13
Merged-chr12-17531016-1	chr12	17530916	17531116	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13857.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	5.65	0.0	3.99	4.83	2.05	5.02	1.66	4.57	14.75	5.52	9.04	7.21
Merged-chr15-25826624-1	chr15	25826524	25826724	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B1|LTR|ERVL	-16674.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.44	2.77	7.42	0.8	3.27	10.35	4.98	5.02	7.08	12.05	8.54	1.25
Merged-chr10-68673681-2	chr10	68673577	68673777	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-50069.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	3.02	0.0	5.63	4.5	7.53	4.98	7.26	10.03	7.53	11.56	6.58
Merged-chrX-105849447-1	chrX	105849347	105849547	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 15 of 34)	intron (NM_009530, intron 15 of 34)	79925.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	0.0	1.26	2.28	2.41	0.0	0.0	3.32	0.67	9.83	4.52	15.07	4.07
Merged-chr4-110665180-1	chr4	110665080	110665280	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 3 of 12)	L1_Mus2|LINE|L1	267482.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	8.48	11.32	10.27	1.21	2.86	4.7	3.99	2.3	6.29	8.03	11.56	3.76
Merged-chr13-104823369-1	chr13	104823269	104823469	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	6199.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	2.42	3.77	6.85	4.42	4.09	0.0	4.98	5.55	3.54	3.01	9.55	0.94
Merged-chr17-80291389-3	chr17	80291309	80291509	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163759)	promoter-TSS (NM_001163759)	-933.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	12.92	8.3	4.56	6.44	9.0	7.53	3.99	7.82	5.7	8.54	5.02	6.27
Merged-chr16-10846691-2	chr16	10846589	10846789	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11630.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	8.88	6.79	4.56	4.83	4.91	8.78	0.66	6.53	7.28	9.04	13.57	9.71
Merged-chr19-5054028-2	chr19	5053927	5054127	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145495, intron 9 of 9)	intron (NM_145495, intron 9 of 9)	3219.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	13.33	9.06	4.56	2.41	7.36	9.72	3.99	3.42	12.98	7.03	7.54	5.01
Merged-chr5-122044751-1	chr5	122044651	122044851	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312908, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	3074.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	2.83	3.52	3.42	3.22	2.05	0.94	5.65	5.1	0.39	2.01	0.0	3.45
Merged-chr2-37716433-1	chr2	37716333	37716533	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28149.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	1.21	2.77	1.14	0.4	2.86	5.64	4.65	6.62	2.56	1.0	6.53	1.57
Merged-chr10-25312074-1	chr10	25311974	25312174	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12911.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.42	0.25	0.0	0.8	0.0	0.0	1.0	1.82	10.62	5.52	12.06	10.96
Merged-chr10-78455573-1	chr10	78455473	78455673	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	9375.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.04	6.79	6.28	15.69	3.27	6.59	3.65	5.97	2.75	3.01	5.53	3.76
Merged-chr4-133847354-1	chr4	133847254	133847454	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285506)	TTS (NM_001285506)	27377.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.62	0.0	0.0	0.0	0.82	1.25	0.66	0.0	10.23	4.52	9.55	2.51
Merged-chr5-105154014-1	chr5	105153914	105154114	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-14428.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	6.86	6.54	9.13	7.64	6.14	2.2	2.99	1.96	14.55	9.54	3.52	2.19
Merged-chr3-75910440-1	chr3	75910340	75910540	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291069, intron 2 of 15)	intron (NM_001291069, intron 2 of 15)	46509.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	4.85	5.03	10.27	5.63	4.09	6.27	5.98	7.37	6.1	2.51	8.54	9.71
Merged-chr1-189654595-2	chr1	189654480	189654680	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081363, exon 13 of 18)	exon (NM_001081363, exon 13 of 18)	33506.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.23	3.77	10.84	12.07	2.45	3.76	5.31	11.02	2.16	2.51	2.51	4.7
Merged-chr1-33892979-2	chr1	33892880	33893080	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	14641.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.04	5.28	7.99	5.23	2.45	5.96	1.66	7.65	6.1	10.54	6.03	11.59
Merged-chr9-105656406-2	chr9	105656300	105656500	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081309, intron 6 of 19)	MTD|LTR|ERVL-MaLR	13405.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	9.69	1.51	5.13	12.87	4.09	5.33	2.99	6.76	1.97	0.0	0.5	1.88
Merged-chr7-49252633-1	chr7	49252533	49252733	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	6444.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.23	4.78	5.13	2.82	8.59	5.33	1.33	6.14	3.15	10.04	5.53	6.27
Merged-chr6-90422681-3	chr6	90422561	90422761	+	704.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173775, intron 2 of 16)	intron (NM_173775, intron 2 of 16)	5819.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	6.86	6.54	2.85	11.66	8.59	6.27	4.65	10.07	9.44	6.03	17.59	9.4
Merged-chr6-140763753-2	chr6	140763661	140763861	+	704.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136876.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.85	2.52	3.42	7.64	5.73	8.78	12.29	20.02	6.49	13.05	12.06	10.02
Merged-chr9-109046437-3	chr9	109046363	109046563	+	704.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357932, intron 2 of 5)	B1_Mur2|SINE|Alu	-4633.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	9.69	14.84	11.41	11.26	6.55	12.86	8.64	2.97	12.39	23.1	14.57	9.08
Merged-chr17-29259685-3	chr17	29259585	29259785	+	704.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026845, intron 2 of 3)	intron (NM_026845, intron 2 of 3)	4286.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	7.67	8.8	9.7	7.24	8.59	9.72	5.31	5.27	13.96	9.54	11.05	9.71
Merged-chr2-118490342-3	chr2	118490240	118490440	+	704.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10644.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	9.29	4.78	9.13	10.05	10.23	15.68	4.65	9.39	15.34	25.61	12.06	9.71
Merged-chr9-37082412-2	chr9	37082311	37082511	+	704.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	64911.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	5.65	7.55	10.84	10.86	6.14	4.39	6.98	8.3	0.79	0.0	0.0	0.63
Merged-chr19-34879741-2	chr19	34879657	34879857	+	704.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001114339)	promoter-TSS (NM_001114339)	-302.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	9.29	8.55	1.14	13.67	5.73	1.88	1.33	7.88	0.98	8.54	8.54	8.46
Merged-chr2-153543173-2	chr2	153543085	153543285	+	704.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-13214.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.23	4.28	1.14	0.8	22.5	11.6	6.31	5.86	15.34	11.55	7.03	1.88
Merged-chr7-134689653-3	chr7	134689567	134689767	+	704.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18980.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	6.46	4.28	12.55	7.24	5.32	6.59	7.31	4.63	12.98	9.04	6.03	10.02
Merged-chr3-8989034-2	chr3	8988937	8989137	+	704.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	15167.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.85	10.56	5.7	1.61	7.36	7.21	6.31	13.32	10.23	9.54	14.57	8.14
Merged-chr7-127104733-3	chr7	127104642	127104842	+	704.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13306.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	10.9	7.55	13.12	8.85	12.68	11.6	6.98	7.18	14.16	18.58	14.07	7.52
Merged-chr4-117288161-3	chr4	117288054	117288254	+	704.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310730, intron 2 of 10)	MIRb|SINE|MIR	1301.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	5.65	3.77	9.13	8.45	9.82	6.59	5.31	10.68	12.78	13.56	13.06	10.34
Merged-chr16-44002255-2	chr16	44002158	44002358	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 8 of 16)	intron (NM_001359085, intron 8 of 16)	-11594.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	4.04	5.53	5.7	6.44	7.36	9.09	2.66	6.98	17.51	10.54	27.64	9.08
Merged-chr15-67434487-2	chr15	67434403	67434603	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207734.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	6.86	5.28	9.13	4.02	12.27	13.8	0.33	10.12	16.92	19.58	2.51	8.14
Merged-chr12-105025495-2	chr12	105025386	105025586	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5655.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	2.02	3.52	3.42	6.44	3.68	9.41	3.99	6.95	8.46	5.02	6.03	7.21
Merged-chr11-116615350-1	chr11	116615250	116615450	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8902.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.23	5.53	4.56	3.62	8.59	8.15	4.65	5.16	9.83	11.55	7.54	5.33
Merged-chr4-81745274-3	chr4	81745176	81745376	+	704.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258263.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	8.88	6.79	5.7	9.25	11.05	9.41	12.29	26.3	10.03	7.03	14.07	11.28
Merged-chr4-124805212-3	chr4	124805105	124805305	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	2656.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	15.34	6.54	10.27	8.85	10.64	17.25	3.65	4.91	16.92	4.52	14.07	5.95
Merged-chr2-61137026-1	chr2	61136926	61137126	+	704.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-161875.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	4.44	2.01	3.42	6.84	6.14	3.76	3.99	7.6	5.7	2.51	9.04	1.57
Merged-chr12-12148055-3	chr12	12147944	12148144	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114095.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.65	4.53	11.41	7.24	3.27	7.53	13.95	11.44	8.06	12.05	9.55	9.71
Merged-chr6-116733743-3	chr6	116733659	116733859	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17001.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	4.44	4.78	6.28	2.41	3.27	9.41	1.66	9.81	10.23	7.53	14.07	2.19
Merged-chr12-79092765-3	chr12	79092652	79092852	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110486, intron 2 of 2)	L1MDa|LINE|L1	-3082.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	9.69	6.29	8.56	3.62	11.86	7.21	8.97	14.66	8.06	18.58	11.56	6.58
Merged-chr5-65260262-1	chr5	65260162	65260362	+	704.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001359879)	TTS (NM_001359879)	60566.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	4.85	2.52	9.13	3.22	5.32	6.27	4.98	7.32	4.33	3.01	11.56	5.95
Merged-chr9-106386627-2	chr9	106386536	106386736	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18004.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.85	3.77	1.71	4.83	5.32	4.7	2.66	7.26	9.64	7.53	14.07	10.96
Merged-chr15-103316628-2	chr15	103316516	103316716	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-6178.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.5	2.28	2.41	9.82	4.08	8.97	22.26	11.41	4.52	14.07	5.95
Merged-chr10-13090848-2	chr10	13090790	13090990	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131912)	promoter-TSS (NR_131912)	45.0	NR_131912	338438.0		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	4.85	3.27	2.28	3.22	5.32	5.33	4.65	8.24	4.72	7.53	13.06	3.76
Merged-chr10-83344015-2	chr10	83343921	83344121	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6204.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.04	8.55	4.56	3.22	6.55	7.53	4.98	6.17	8.85	2.51	13.57	5.33
Merged-chr4-150495707-3	chr4	150495614	150495814	+	704.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	156460.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	9.29	6.29	13.69	10.05	13.5	9.72	4.98	15.73	4.92	9.54	10.55	9.08
Merged-chr18-9494507-3	chr18	9494417	9494617	+	704.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44363.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.44	7.29	9.7	5.23	9.82	8.78	8.3	15.08	10.42	14.06	4.02	4.7
Merged-chr5-115359031-3	chr5	115358937	115359137	+	704.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10082.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	8.48	4.53	14.26	6.44	9.41	14.74	1.33	8.16	13.57	21.59	22.11	11.28
Merged-chr2-102914349-2	chr2	102914233	102914433	+	704.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-12668.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.25	5.79	5.13	11.26	2.86	3.76	1.0	2.75	9.64	11.05	19.6	10.02
Merged-chr1-131091054-3	chr1	131090972	131091172	+	704.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6771.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	1.62	4.78	9.13	8.85	4.91	11.6	5.65	8.27	6.69	10.04	8.04	9.08
Merged-chr12-104418633-3	chr12	104418509	104418709	+	704.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	11901.0	NM_009252	20716.0	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	3.23	8.05	6.28	5.63	5.32	4.08	3.65	8.8	9.44	4.52	13.57	5.95
Merged-chr2-143917799-3	chr2	143917694	143917894	+	704.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019771, intron 1 of 3)	intron (NM_019771, intron 1 of 3)	2463.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	6.46	11.82	7.99	2.41	11.45	10.35	3.99	7.68	9.64	13.05	5.53	2.82
Merged-chr7-109781487-3	chr7	109781361	109781561	+	704.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020610)	promoter-TSS (NM_020610)	84.0	NM_020610	78593.0	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	8.08	4.78	9.7	3.22	4.91	13.17	9.63	6.59	6.69	3.51	7.54	7.52
Merged-chr11-55078012-2	chr11	55077903	55078103	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	128.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	5.65	11.07	3.42	8.04	7.77	4.39	12.62	5.02	5.11	3.51	6.53	5.64
Merged-chr11-94149854-2	chr11	94149756	94149956	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-61598.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	10.09	6.79	1.71	4.02	9.41	8.78	5.31	9.62	7.47	5.52	3.52	3.76
Merged-chr6-127035007-1	chr6	127034907	127035107	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19465.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	5.25	4.02	4.56	5.63	2.45	10.98	4.98	4.93	3.54	3.51	7.03	2.82
Merged-chr7-97210176-2	chr7	97210074	97210274	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	115790.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	12.11	5.28	4.56	3.62	13.91	9.72	5.31	10.79	9.05	10.04	13.57	2.82
Merged-chr9-96504281-2	chr9	96504198	96504398	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25623.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	1.21	2.01	8.56	4.02	2.86	2.51	4.65	10.96	6.29	3.51	11.56	10.34
Merged-chr10-34234245-2	chr10	34234140	34234340	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-26689.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	8.08	7.8	11.41	6.44	5.32	3.45	2.66	5.21	6.29	10.04	3.01	2.19
Merged-chr18-24145274-2	chr18	24145164	24145364	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23445.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	2.02	2.52	4.56	4.42	2.86	6.27	9.97	12.0	9.05	3.51	8.54	6.27
Merged-chr5-75143379-3	chr5	75143268	75143468	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045792, intron 3 of 3)	intron (NR_045792, intron 3 of 3)	-8883.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	4.85	8.55	8.56	12.47	6.95	12.23	7.31	14.22	8.26	11.05	7.03	2.19
Merged-chr7-123203829-2	chr7	123203729	123203929	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR31|LTR|ERV1	-11037.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	6.86	7.55	10.27	12.47	7.36	5.33	9.3	11.5	8.65	11.05	10.05	8.46
Merged-chr7-72299896-2	chr7	72299796	72299996	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	6699.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	7.27	7.29	5.7	8.45	8.18	5.96	9.97	14.13	0.2	4.02	0.5	1.25
Merged-chr7-101649613-2	chr7	101649523	101649723	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14145.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	5.65	5.28	13.12	7.24	8.18	10.35	7.64	12.56	6.29	5.02	6.03	7.52
Merged-chr4-105556968-2	chr4	105556873	105557073	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	399626.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.83	0.25	2.28	0.8	5.73	4.39	7.64	6.62	8.26	8.54	10.05	5.95
Merged-chr5-124521757-1	chr5	124521657	124521857	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	9634.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	9.69	8.3	2.28	7.64	5.73	3.14	1.33	5.66	4.92	4.52	13.57	2.19
Merged-chr7-45556007-1	chr7	45555907	45556107	+	704.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025330, intron 1 of 8)	intron (NM_025330, intron 1 of 8)	1079.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	10.9	6.29	4.56	8.45	9.0	6.27	2.99	3.22	10.82	7.03	10.05	8.46
Merged-chr10-127076271-2	chr10	127076170	127076370	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2637.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	4.04	1.51	7.42	5.63	4.5	4.39	3.65	3.67	11.8	6.53	12.56	4.07
Merged-chr4-58952126-1	chr4	58952026	58952226	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355408, intron 5 of 6)	intron (NM_001355408, intron 5 of 6)	8498.0	NM_001355408	100041581.0	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	11.31	4.78	10.27	0.0	7.36	15.05	3.65	6.0	3.54	4.52	9.04	1.88
Merged-chr19-53318692-1	chr19	53318592	53318792	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	7247.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	1.21	0.75	2.85	0.0	2.05	5.64	16.94	7.46	4.13	1.0	1.51	3.45
Merged-chr3-38519591-1	chr3	38519491	38519691	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-34775.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	2.42	0.75	0.0	0.8	9.0	3.76	7.64	6.2	10.23	1.0	7.54	2.82
Merged-chr7-130117328-2	chr7	130117242	130117442	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	149466.0	NM_010207	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	4.85	5.53	13.69	10.46	5.32	7.53	4.65	5.86	5.7	2.01	14.57	1.57
Merged-chr1-191124024-4	chr1	191124016	191124216	+	704.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25702.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.42	2.77	7.99	2.82	10.64	5.96	6.31	5.78	8.65	4.02	10.05	13.47
Merged-chr5-3647110-3	chr5	3646940	3647140	+	704.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026033, intron 1 of 4)	intron (NM_026033, intron 1 of 4)	896.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	2.02	4.78	3.42	4.42	2.45	6.27	5.31	3.17	6.88	6.03	11.56	6.58
Merged-chr3-105841713-3	chr3	105841616	105841816	+	704.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	26149.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	7.27	8.55	7.99	3.22	6.95	3.45	3.65	11.89	16.33	8.03	20.1	6.89
Merged-chr12-25164929-2	chr12	25164821	25165021	+	704.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35747.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.44	7.04	7.99	4.02	6.55	4.7	5.98	10.71	10.62	4.52	19.09	7.21
Merged-chr14-46129704-2	chr14	46129600	46129800	+	704.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	45673.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	2.42	8.05	3.99	4.83	12.27	7.53	7.31	10.51	0.0	0.5	0.0	0.0
Merged-chr7-135605236-2	chr7	135605143	135605343	+	704.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-585.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	6.86	3.77	11.41	6.03	8.59	8.78	6.31	10.32	8.06	8.03	7.03	7.52
Merged-chr19-56655817-2	chr19	56655741	56655941	+	704.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66531.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.81	2.52	11.41	6.84	7.77	8.78	2.99	13.54	6.69	4.02	16.08	5.64
Merged-chr11-83535986-2	chr11	83535881	83536081	+	704.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5463.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	8.08	2.52	10.27	2.01	16.36	10.03	2.99	4.74	12.39	9.04	5.53	1.88
Merged-chr11-79083728-1	chr11	79083628	79083828	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-23892.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.65	3.77	4.56	5.63	6.55	6.59	9.97	6.17	3.93	2.01	7.03	10.34
Merged-chr10-99428581-3	chr10	99428439	99428639	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165308.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	10.5	6.79	8.56	12.47	11.05	9.09	7.97	4.37	10.82	5.02	7.03	4.7
Merged-chr4-114925432-3	chr4	114925313	114925513	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015758, exon 1 of 1)	exon (NM_015758, exon 1 of 1)	600.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	9.29	9.56	7.99	12.47	8.18	12.23	11.96	11.19	10.03	12.05	12.06	5.95
Merged-chr1-56980209-3	chr1	56980096	56980296	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	52.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	8.48	7.04	14.26	9.25	11.05	8.15	6.98	11.5	8.26	9.04	12.56	10.65
Merged-chr14-105505218-1	chr14	105505118	105505318	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	6430.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	4.04	6.54	10.27	6.03	2.45	10.03	7.97	6.56	15.54	12.05	8.04	3.13
Merged-chr1-181616298-3	chr1	181616203	181616403	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104852.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	8.88	10.31	1.14	6.03	6.55	6.27	3.99	8.72	11.6	4.52	7.03	10.34
Merged-chr1-51517657-1	chr1	51517557	51517757	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-39258.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	2.02	4.02	4.56	6.44	6.14	6.59	4.98	10.15	6.49	1.0	4.02	1.88
Merged-chr17-8468973-1	chr17	8468873	8469073	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34550.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	7.27	5.53	2.28	9.65	9.82	4.39	6.98	4.46	0.59	3.01	2.01	2.19
Merged-chr17-56005887-3	chr17	56005789	56005989	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	-283.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	37.55	44.52	15.97	22.93	9.0	12.86	6.31	12.7	13.37	21.59	9.04	11.59
Merged-chr5-123714825-1	chr5	123714725	123714925	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	6219.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	7.67	1.51	0.0	2.41	5.73	8.78	3.99	7.18	11.01	4.52	5.02	4.7
Merged-chr2-127080760-3	chr2	127080607	127080807	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	10050.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.44	5.03	6.85	10.86	7.77	5.64	4.98	5.41	9.05	6.03	4.02	5.64
Merged-chr10-120151786-2	chr10	120151697	120151897	+	704.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-38832.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	1.21	3.27	1.14	7.64	8.59	7.84	4.65	10.82	11.41	3.51	10.55	2.19
Merged-chr11-50827758-3	chr11	50827631	50827831	+	704.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013922)	promoter-TSS (NM_013922)	0.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	9.69	12.32	9.13	7.64	13.5	7.21	10.63	15.36	7.87	6.53	28.64	7.83
Merged-chr13-92038221-2	chr13	92038145	92038345	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50203.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	2.42	3.02	0.57	1.61	14.73	8.47	6.98	16.85	11.6	7.53	9.04	1.25
Merged-chr7-141461772-2	chr7	141461652	141461852	+	704.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_152220, exon 2 of 2)	non-coding (NR_152220, exon 2 of 2)	658.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	11.31	4.02	7.42	3.22	7.36	8.78	5.98	6.93	6.69	3.51	14.57	4.07
Merged-chr7-121706714-2	chr7	121706574	121706774	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033173, exon 1 of 16)	exon (NM_001033173, exon 1 of 16)	579.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	9.69	4.78	7.99	6.84	2.86	5.02	4.65	5.36	10.62	9.04	8.04	4.07
Merged-chr2-30078171-2	chr2	30078069	30078269	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153805)	promoter-TSS (NM_153805)	-529.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	5.65	3.27	4.56	11.26	4.09	8.47	2.66	5.78	6.88	4.52	10.05	7.21
Merged-chr11-104440698-2	chr11	104440600	104440800	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1591.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.44	8.05	6.85	8.45	2.86	9.09	1.99	6.34	13.77	10.04	8.54	6.58
Merged-chr1-95604017-2	chr1	95603938	95604138	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	L1_Mus2|LINE|L1	63556.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.63	6.79	5.7	7.24	10.64	3.76	13.95	6.28	9.24	5.02	5.53	7.52
Merged-chr14-77841701-1	chr14	77841601	77841801	+	704.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 4 of 5)	intron (NM_025384, intron 4 of 5)	33216.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.81	1.26	1.14	0.0	0.0	0.0	0.0	0.0	9.24	12.05	7.54	6.58
Merged-chr19-4930762-2	chr19	4930633	4930833	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347422, exon 6 of 6)	3' UTR (NM_001347422, exon 6 of 6)	-2446.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	4.85	7.55	1.71	2.82	9.0	5.96	2.99	5.83	8.46	6.03	6.03	6.27
Merged-chr16-58685769-3	chr16	58685673	58685873	+	704.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15565.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.85	10.31	9.7	2.01	12.68	5.64	16.28	8.33	9.24	10.04	10.05	14.41
Merged-chr11-104387538-3	chr11	104387426	104387626	+	704.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	54765.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.06	6.54	11.41	14.88	13.09	15.99	5.31	13.71	9.64	13.56	6.53	11.59
Merged-chr6-129491474-3	chr6	129491385	129491585	+	704.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301096, intron 1 of 3)	intron (NM_001301096, intron 1 of 3)	15680.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	6.86	7.29	10.27	11.66	11.86	5.02	6.98	15.22	10.62	5.02	12.56	10.02
Merged-chr14-66225692-2	chr14	66225601	66225801	+	704.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11877.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.63	8.3	2.85	10.86	10.64	10.35	6.98	6.39	7.67	9.04	7.54	8.77
Merged-chr11-115099693-2	chr11	115099603	115099803	+	704.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	8272.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	6.86	5.03	0.57	8.45	6.95	7.53	12.62	9.31	4.13	5.52	6.53	5.01
Merged-chr4-133238085-2	chr4	133237993	133238193	+	704.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2725.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	13.33	6.04	3.42	8.45	13.09	5.96	6.31	10.57	12.0	10.54	10.05	5.95
Merged-chr2-118263981-3	chr2	118263887	118264087	+	704.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7021.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	10.5	16.6	9.13	10.05	9.82	10.98	6.98	6.5	17.9	9.54	13.57	9.08
Merged-chr6-113669867-4	chr6	113669732	113669932	+	704.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-27218.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.04	6.29	3.42	2.41	1.23	8.15	2.66	4.12	10.82	2.01	7.54	7.21
Merged-chr9-66067767-3	chr9	66067679	66067879	+	704.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025612, intron 5 of 6)	intron (NM_001025612, intron 5 of 6)	1952.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	8.08	9.31	8.56	3.22	7.36	10.35	2.66	1.96	18.69	8.03	12.06	10.34
Merged-chr13-81135703-2	chr13	81135610	81135810	+	704.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	171636.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.25	2.52	5.7	0.0	3.68	3.76	6.31	9.48	11.21	14.56	10.55	6.27
Merged-chr2-147010328-2	chr2	147010235	147010435	+	704.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2664.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	2.42	1.51	11.41	0.8	10.23	5.64	1.99	7.32	20.26	12.05	13.06	3.13
Merged-chr15-85076501-2	chr15	85076401	85076601	+	704.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080470, intron 19 of 24)	RLTR42-int|LTR|ERVK	33759.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	5.65	10.06	6.28	5.63	6.95	8.15	4.98	7.46	10.03	10.54	9.55	9.4
Merged-chr3-87498323-3	chr3	87498223	87498423	+	704.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113238, intron 11 of 11)	Lx8|LINE|L1	-27255.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	11.31	13.58	11.41	7.24	7.77	5.33	7.97	7.99	6.1	6.03	11.56	2.51
Merged-chr4-48048137-3	chr4	48048033	48048233	+	704.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	2828.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	10.9	9.31	7.99	11.66	4.09	3.45	5.31	6.73	11.41	7.03	9.04	2.19
Merged-chr8-60865793-1	chr8	60865693	60865893	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24600.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	7.67	4.53	4.56	4.02	6.55	3.14	4.32	7.74	4.92	5.52	9.04	1.88
Merged-chr15-44625014-1	chr15	44624914	44625114	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357690, intron 2 of 6)	B3|SINE|B2	5373.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	2.42	4.78	3.42	3.62	6.95	8.78	5.31	6.9	15.14	3.51	7.03	7.83
Merged-chr4-133459116-1	chr4	133459016	133459216	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21017.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.63	4.53	5.7	0.0	2.45	5.02	1.99	2.8	3.93	0.5	2.51	3.13
Merged-chr2-109913070-1	chr2	109912970	109913170	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033473, intron 1 of 4)	RSINE1|SINE|B4	249.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	1.21	6.29	1.14	5.63	5.73	5.02	2.99	5.78	3.93	5.52	2.51	3.13
Merged-chr5-62893217-2	chr5	62893100	62893300	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79377.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.23	2.01	5.13	1.21	1.64	5.02	8.64	5.21	8.26	13.05	7.03	4.07
Merged-chr15-90634030-1	chr15	90633930	90634130	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	45358.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.81	0.25	0.0	2.01	9.41	8.15	15.94	8.44	0.2	0.0	0.0	0.0
Merged-chr2-70842403-1	chr2	70842303	70842503	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16923.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	1.62	2.77	6.28	3.22	4.09	4.7	9.3	5.55	2.56	5.02	5.53	5.64
Merged-chr3-9711261-1	chr3	9711161	9711361	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-101176.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	1.62	3.27	1.14	3.62	0.82	5.33	6.31	4.57	1.97	5.02	2.01	4.07
Merged-chr11-21011014-1	chr11	21010914	21011114	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80310.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	2.02	0.75	7.99	0.4	4.09	5.33	5.31	6.25	3.15	0.5	5.53	1.88
Merged-chr16-44772726-2	chr16	44772617	44772817	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	6981.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.44	5.79	4.56	9.25	4.91	7.21	4.65	11.69	8.26	5.52	10.55	4.7
Merged-chr3-68744515-1	chr3	68744415	68744615	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16980.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	3.52	2.28	1.61	2.05	3.14	2.66	2.47	0.59	3.01	1.51	0.31
Merged-chr2-118743433-1	chr2	118743333	118743533	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2325.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	13.73	6.29	9.13	5.63	2.45	6.27	2.99	3.84	8.46	5.02	7.03	9.71
Merged-chr7-43659365-1	chr7	43659265	43659465	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031181, exon 2 of 7)	exon (NM_031181, exon 2 of 7)	796.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.25	2.52	2.28	2.82	4.91	1.25	1.0	1.74	6.29	11.55	14.07	4.7
Merged-chr2-128763906-1	chr2	128763806	128764006	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54397.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.62	1.01	1.14	1.61	6.14	6.59	1.99	6.17	6.1	8.03	0.0	3.13
Merged-chr4-141363353-2	chr4	141363250	141363450	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4842.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	10.5	8.3	5.7	6.44	6.95	7.84	3.32	6.31	18.88	8.54	8.04	4.39
Merged-chr13-37960075-1	chr13	37959975	37960175	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34133.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	1.62	7.55	3.99	3.62	4.5	2.2	6.31	6.34	1.57	1.0	1.0	4.7
Merged-chr15-58734829-1	chr15	58734729	58734929	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	88598.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	1.62	1.51	0.0	0.0	5.73	4.08	2.66	8.61	4.33	4.02	5.53	3.13
Merged-chr12-54710708-1	chr12	54710608	54710808	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14814.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	10.09	12.32	4.56	4.83	3.27	12.86	9.97	2.13	3.54	4.02	1.0	3.45
Merged-chr6-126792244-2	chr6	126792147	126792347	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51573.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	2.83	11.07	3.42	14.48	5.73	8.15	9.3	2.64	1.18	1.0	1.0	3.76
Merged-chr2-165286976-1	chr2	165286876	165287076	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	811.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	2.02	4.28	5.13	4.83	2.45	5.96	2.99	5.89	5.31	8.54	5.53	7.21
Merged-chr19-17359368-1	chr19	17359268	17359468	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-2701.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	8.48	9.56	9.13	7.64	4.5	10.98	3.65	6.67	7.08	1.51	4.52	3.76
Merged-chr3-84175453-1	chr3	84175353	84175553	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_036654)	TTS (NR_036654)	815.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	3.23	2.01	2.85	4.83	9.41	11.6	1.99	4.6	4.52	4.02	6.03	4.07
Merged-chr12-31938708-1	chr12	31938608	31938808	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177993, intron 3 of 8)	intron (NM_177993, intron 3 of 8)	11537.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.23	3.77	0.0	4.83	2.05	5.02	3.32	6.93	9.24	3.51	3.52	1.57
Merged-chr6-108384705-2	chr6	108384581	108384781	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 20 of 61)	intron (NM_010585, intron 20 of 61)	-105062.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.65	2.52	5.7	4.42	15.14	1.88	4.98	7.04	6.88	4.02	7.54	3.76
Merged-chr6-145142556-2	chr6	145142461	145142661	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-2914.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	6.06	3.02	8.56	4.02	8.18	2.2	4.32	8.24	10.03	4.52	12.06	3.13
Merged-chr15-66559290-1	chr15	66559190	66559390	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172514, exon 2 of 10)	exon (NM_172514, exon 2 of 10)	1756.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	5.25	4.53	4.56	8.04	1.64	2.51	3.65	6.22	4.92	10.04	7.03	7.83
Merged-chr8-3328027-1	chr8	3327927	3328127	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25388.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	10.9	4.28	7.99	0.8	7.77	1.57	11.29	5.47	6.1	6.03	6.03	3.76
Merged-chr16-42608486-1	chr16	42608386	42608586	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	267101.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.4	1.26	2.85	4.83	1.23	1.25	5.65	5.24	3.74	0.5	4.02	1.57
Merged-chr11-121053746-1	chr11	121053646	121053846	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_026907, exon 5 of 5)	3' UTR (NM_026907, exon 5 of 5)	9823.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	10.9	7.55	3.99	2.01	4.09	6.27	1.33	2.5	9.05	10.54	2.51	3.13
Merged-chr8-108697823-1	chr8	108697723	108697923	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16821.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.44	9.31	3.99	14.48	5.32	4.39	9.3	4.79	5.11	5.52	5.53	3.45
Merged-chr3-94425934-1	chr3	94425834	94426034	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357713, exon 6 of 6)	exon (NM_001357713, exon 6 of 6)	10717.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	4.85	0.5	0.0	2.01	4.91	6.59	3.99	10.18	2.56	1.51	0.0	0.31
Merged-chr2-33452343-1	chr2	33452243	33452443	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027947, exon 4 of 4)	3' UTR (NM_027947, exon 4 of 4)	16189.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	8.48	9.06	2.85	1.61	0.82	21.01	0.66	3.03	13.96	9.04	5.53	4.07
Merged-chr10-42089308-3	chr10	42089214	42089414	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70932.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	9.69	8.3	11.41	15.69	12.27	7.21	9.3	19.91	6.1	9.54	13.06	7.83
Merged-chr6-93962506-1	chr6	93962406	93962606	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-48816.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	1.62	0.75	1.14	5.63	2.05	3.45	5.31	10.12	0.59	7.03	3.52	4.39
Merged-chr4-62654093-1	chr4	62653993	62654193	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-19881.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.81	3.52	6.28	4.42	4.09	6.27	2.99	6.03	6.69	4.52	7.03	3.76
Merged-chr13-24785941-1	chr13	24785841	24786041	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15716.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	4.04	0.75	1.14	2.41	3.27	1.57	5.31	3.14	3.74	7.03	0.5	3.13
Merged-chr6-97363397-1	chr6	97363297	97363497	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	L4_A_Mam|LINE|RTE-X	95889.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.23	3.52	13.69	5.63	1.64	3.14	5.98	4.29	1.97	3.01	14.07	7.52
Merged-chr15-97878915-1	chr15	97878815	97879015	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	29381.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	1.62	1.76	2.85	5.23	7.36	1.88	12.29	3.76	1.18	1.0	2.51	4.7
Merged-chr8-88274298-1	chr8	88274198	88274398	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	1895.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.4	1.76	0.0	0.0	7.77	16.62	7.31	6.08	6.88	5.02	15.58	6.89
Merged-chr2-181458884-1	chr2	181458784	181458984	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028125, intron 1 of 2)	CpG	542.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	5.65	3.02	16.54	2.82	7.36	10.35	5.31	4.37	8.26	6.03	5.02	8.14
Merged-chr3-126673259-1	chr3	126673159	126673359	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	MTA_Mm|LTR|ERVL-MaLR	76308.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	8.08	4.02	3.42	4.02	2.45	5.02	9.3	4.74	9.24	4.52	13.06	12.22
Merged-chr1-4967195-1	chr1	4967095	4967295	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	51539.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	1.62	2.01	1.71	2.82	0.0	1.25	7.31	4.57	3.15	1.51	7.03	2.19
Merged-chr13-5443748-1	chr13	5443648	5443848	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	414344.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.23	2.52	2.85	2.82	6.55	1.57	6.31	8.92	3.34	12.55	4.02	4.07
Merged-chr4-156196777-1	chr4	156196677	156196877	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021604, intron 1 of 35)	CpG	711.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	7.67	3.77	1.71	2.82	3.27	4.7	4.32	5.05	4.13	4.02	5.02	2.51
Merged-chr3-107233654-3	chr3	107233582	107233782	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001256174, exon 3 of 3)	exon (NM_001256174, exon 3 of 3)	3068.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	3.63	4.78	2.85	7.64	7.36	5.64	4.98	7.18	11.01	13.56	19.6	13.78
Merged-chr1-85752431-1	chr1	85752331	85752531	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106172)	TTS (NR_106172)	483.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	2.42	1.26	2.28	4.42	4.91	3.14	5.98	5.36	2.95	7.03	8.04	1.25
Merged-chr8-40296620-1	chr8	40296520	40296720	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9667.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.83	5.53	2.85	6.03	2.05	6.27	4.32	4.77	8.85	2.01	15.07	5.01
Merged-chr3-105045569-1	chr3	105045469	105045669	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	PB1D7|SINE|Alu	7384.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	2.42	2.77	1.14	4.42	8.59	9.41	7.97	7.12	9.64	7.03	8.54	5.95
Merged-chr3-38173886-1	chr3	38173786	38173986	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	34233.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	6.06	8.3	14.83	10.86	1.64	0.63	0.0	1.07	1.38	1.0	3.01	0.31
Merged-chr4-119707989-1	chr4	119707889	119708089	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49044.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	4.44	7.04	3.42	4.83	5.32	6.9	3.99	7.63	1.57	2.01	6.03	5.33
Merged-chr3-131246837-1	chr3	131246737	131246937	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	25264.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	2.02	2.52	3.99	4.83	1.64	4.08	6.64	7.46	5.51	2.01	8.04	4.07
Merged-chr3-89280141-1	chr3	89280041	89280241	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-496.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.85	10.06	1.14	2.01	7.77	4.08	2.99	4.74	4.72	1.51	4.02	8.14
Merged-chr1-78488063-3	chr1	78487951	78488151	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278075, intron 1 of 17)	intron (NM_001278075, intron 1 of 17)	846.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	3.23	0.75	4.56	4.02	4.09	1.88	5.31	5.66	8.46	6.03	6.03	6.89
Merged-chr15-91169196-1	chr15	91169096	91169296	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	22811.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.23	3.52	17.68	9.65	7.77	6.59	3.99	7.09	5.9	4.02	16.58	3.76
Merged-chr9-99491227-2	chr9	99491132	99491332	+	703.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	20811.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	9.69	13.08	14.83	9.25	12.27	9.09	8.64	7.35	24.98	9.54	10.05	4.39
Merged-chr10-61399551-3	chr10	61399459	61399659	+	703.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16036.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	8.48	8.8	10.27	7.24	6.14	10.66	0.66	7.91	11.01	8.54	25.63	12.53
Merged-chr2-44922696-2	chr2	44922603	44922803	+	703.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61081.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	11.71	2.77	2.28	6.03	9.41	5.33	7.97	10.65	8.06	4.52	10.55	4.07
Merged-chr6-29621226-2	chr6	29621138	29621338	+	703.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11389.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.63	7.55	2.28	0.4	6.14	8.47	3.65	6.59	3.54	5.02	4.52	2.82
Merged-chr4-126114188-2	chr4	126114085	126114285	+	703.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	10228.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	7.27	2.52	3.42	5.23	6.14	10.98	2.33	4.51	10.62	17.57	23.11	10.02
Merged-chr2-131502726-3	chr2	131502633	131502833	+	703.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	10871.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	10.9	5.53	5.13	6.03	11.86	10.98	5.31	13.82	11.6	7.53	6.53	7.52
Merged-chr8-84708544-3	chr8	84708353	84708553	+	703.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6996.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.06	6.29	1.71	3.62	2.86	2.82	4.98	1.57	4.72	3.01	4.02	6.58
Merged-chr4-135709339-3	chr4	135709189	135709389	+	703.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-18870.0	NM_178257	230828.0	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	5.25	9.56	4.56	7.24	3.68	5.64	12.29	4.23	5.7	5.52	10.05	7.52
Merged-chr17-83786186-1	chr17	83786086	83786286	+	703.799988	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_054082, intron 11 of 16)	intron (NM_054082, intron 11 of 16)	60604.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	8.08	9.56	11.41	14.48	0.82	1.88	0.33	6.28	3.74	4.02	11.05	6.89
Merged-chr12-116077668-3	chr12	116077583	116077783	+	703.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009511)	promoter-TSS (NM_009511)	-43.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	10.5	8.8	6.28	16.89	9.41	5.64	12.62	11.21	7.28	4.02	13.06	7.52
Merged-chr9-22143340-3	chr9	22143242	22143442	+	703.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7596.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	4.44	5.79	9.13	0.4	4.5	5.02	3.32	5.89	11.6	10.04	16.58	7.21
Merged-chr12-76265162-2	chr12	76265058	76265258	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138745, intron 1 of 27)	RLTR11B|LTR|ERVK	9926.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	7.67	4.78	14.26	4.83	10.23	5.64	10.63	3.25	10.82	12.55	17.08	5.01
Merged-chr16-57593938-2	chr16	57593823	57594023	+	703.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	12944.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	7.27	8.8	9.13	9.65	5.32	5.02	6.31	2.47	15.93	11.05	4.02	5.95
Merged-chr16-32673057-2	chr16	32672936	32673136	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-118.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	6.86	5.03	2.28	3.22	6.55	5.02	3.65	9.11	10.42	6.53	14.07	6.27
Merged-chr9-124103418-2	chr9	124103310	124103510	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009915, intron 1 of 2)	intron (NM_009915, intron 1 of 2)	1227.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	3.63	6.29	5.7	6.03	5.32	8.78	5.31	8.19	8.06	12.05	8.04	8.77
Merged-chr10-44384416-2	chr10	44384330	44384530	+	703.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24754.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	6.46	7.29	8.56	15.28	9.0	7.84	8.3	9.17	4.13	7.03	7.54	4.7
Merged-chr12-29698236-2	chr12	29698125	29698325	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-11780.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	2.42	1.26	2.85	5.63	1.23	1.25	6.64	7.15	12.59	6.53	18.09	6.58
Merged-chr1-16227799-2	chr1	16227708	16227908	+	703.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121926.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.46	8.05	10.27	8.04	13.91	4.08	4.98	7.6	4.13	7.53	5.02	5.95
Merged-chr6-35597309-3	chr6	35597222	35597422	+	703.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57434.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	8.88	7.04	7.42	0.8	1.64	16.62	7.97	8.38	10.23	9.54	15.07	5.64
Merged-chr3-28236874-3	chr3	28236793	28236993	+	703.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26321.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	14.54	7.55	20.54	11.26	4.09	5.02	3.99	5.97	15.93	6.03	12.56	14.41
Merged-chr6-100438823-3	chr6	100438747	100438947	+	703.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88553.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	7.27	6.54	19.97	6.03	9.82	6.9	8.97	12.73	11.21	13.05	14.57	9.4
Merged-chr13-44679421-1	chr13	44679321	44679521	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-51353.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.44	3.02	7.99	6.44	14.32	7.53	8.64	2.69	0.39	1.0	0.0	2.19
Merged-chr3-81933583-1	chr3	81933483	81933683	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	982.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	4.85	2.26	9.13	2.41	9.0	4.7	6.98	6.67	5.7	10.04	1.0	5.01
Merged-chr3-105865296-1	chr3	105865196	105865396	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER58A|DNA|hAT-Charlie	-5562.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	2.42	3.77	9.13	5.63	2.86	8.15	7.31	5.8	5.11	1.0	8.04	5.33
Merged-chr4-34238121-1	chr4	34238021	34238221	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-188054.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	5.65	3.02	6.85	1.61	6.95	6.59	5.98	6.7	5.11	4.02	4.52	5.01
Merged-chr1-54774374-3	chr1	54774262	54774462	+	703.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 4 of 27)	intron (NM_001081433, intron 4 of 27)	152025.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.46	8.55	10.27	13.27	8.59	13.8	6.98	12.28	8.65	5.02	16.58	6.58
Merged-chr6-123122697-2	chr6	123122599	123122799	+	703.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	9.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	7.27	7.29	5.7	6.03	11.45	2.51	6.64	9.62	6.29	4.02	12.06	4.39
Merged-chr3-55667307-2	chr3	55667217	55667417	+	703.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-115193.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	4.85	6.54	9.7	10.05	2.86	9.09	13.29	7.91	4.92	4.02	6.53	1.25
Merged-chr12-113098688-3	chr12	113098586	113098786	+	703.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346696, intron 1 of 19)	GC_rich|Low_complexity|Low_complexity	408.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	6.86	7.55	9.7	8.45	7.77	17.25	9.97	8.89	9.64	18.08	11.05	9.4
Merged-chr5-142911715-3	chr5	142911637	142911837	+	703.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4983.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	9.29	15.09	8.56	8.85	8.59	22.89	3.99	6.36	16.13	19.08	16.08	5.95
Merged-chr16-32275211-3	chr16	32275120	32275320	+	703.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183283)	TTS (NM_183283)	-2241.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	8.08	6.54	13.12	1.61	11.05	10.66	0.66	8.58	10.03	12.55	20.1	10.65
Merged-chr3-21962487-3	chr3	21962371	21962571	+	703.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114181.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	9.29	6.54	4.56	10.46	8.59	13.8	4.98	7.01	15.93	8.03	17.59	8.77
Merged-chr11-50355662-2	chr11	50355545	50355745	+	703.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	2234.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	3.23	5.28	11.98	7.24	8.18	8.15	8.3	10.09	12.98	10.04	8.54	8.46
Merged-chr6-70849756-2	chr6	70849661	70849861	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313918, intron 1 of 2)	intron (NM_001313918, intron 1 of 2)	5246.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	12.52	6.79	11.41	12.87	14.32	2.2	5.98	6.25	10.62	4.52	2.01	3.76
Merged-chr10-110727989-2	chr10	110727907	110728107	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17432.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	6.46	4.53	0.57	4.02	2.86	6.27	3.32	7.29	7.47	2.51	10.55	5.01
Merged-chr16-12469776-1	chr16	12469676	12469876	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-341614.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.81	1.51	0.0	0.0	4.91	5.64	4.98	4.68	5.7	8.03	8.04	3.76
Merged-chr17-67246026-2	chr17	67245938	67246138	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MER2|DNA|TcMar-Tigger	108421.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.83	0.75	1.71	6.03	4.91	3.14	2.99	3.14	19.47	10.54	6.03	5.64
Merged-chr3-61393749-1	chr3	61393649	61393849	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29242.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.85	3.27	3.99	7.24	6.95	4.39	4.98	6.22	7.28	4.52	6.53	5.33
Merged-chr6-5384342-1	chr6	5384242	5384442	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023048, intron 1 of 5)	intron (NM_023048, intron 1 of 5)	956.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.63	4.28	1.14	2.41	5.73	5.02	1.66	9.53	7.87	9.54	3.52	3.76
Merged-chr13-117311686-3	chr13	117311582	117311782	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91109.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	8.48	4.02	8.56	0.4	7.36	8.15	2.99	7.68	10.42	10.54	13.57	0.94
Merged-chr3-18055588-2	chr3	18055496	18055696	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021560, exon 1 of 1)	exon (NM_021560, exon 1 of 1)	1271.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	4.85	6.54	6.85	11.26	9.41	5.64	5.98	10.77	4.13	8.03	11.56	6.89
Merged-chr1-193060359-2	chr1	193060279	193060479	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24604.0	NM_181546	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	4.04	1.26	1.14	2.41	3.27	7.53	5.65	13.23	1.77	7.53	14.57	10.96
Merged-chr7-135654652-2	chr7	135654576	135654776	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 3 of 17)	B3|SINE|B2	-2362.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	6.06	6.79	2.85	5.23	6.14	5.33	3.65	5.36	8.65	9.04	3.01	10.96
Merged-chr10-42876366-2	chr10	42876247	42876447	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	15835.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	8.88	7.8	8.56	7.24	6.55	8.78	6.64	6.95	5.9	3.51	4.52	1.57
Merged-chr11-80178455-1	chr11	80178355	80178555	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172133, exon 11 of 11)	3' UTR (NM_172133, exon 11 of 11)	-5417.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	1.62	0.0	0.0	3.22	5.32	4.08	10.96	7.77	2.16	3.51	2.51	1.25
Merged-chr16-14129195-2	chr16	14129096	14129296	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 17 of 26)	intron (NM_001081154, intron 17 of 26)	30078.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	6.46	6.29	6.85	7.64	6.95	3.76	6.31	13.09	5.31	5.02	10.05	5.95
Merged-chr10-7816657-1	chr10	7816557	7816757	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-15813.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	2.42	6.04	6.28	5.63	4.91	9.72	3.32	7.32	7.67	5.52	4.02	5.33
Merged-chr4-38478757-1	chr4	38478657	38478857	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	376726.0	NR_151606	102636968.0	Mm.136083	NR_151606	ENSMUSG00000085632	Gm12381	-	predicted gene 12381	ncRNA	1.21	2.01	0.0	0.0	9.0	6.59	1.33	5.94	0.59	0.5	0.5	0.63
Merged-chr7-68579917-1	chr7	68579817	68580017	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38539.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	4.04	5.28	1.71	0.4	1.64	2.82	5.31	6.87	3.34	3.01	2.51	4.07
Merged-chr7-111014384-1	chr7	111014284	111014484	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14567.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	4.85	3.52	4.56	6.03	8.59	5.64	4.65	5.07	8.06	4.52	6.03	5.95
Merged-chr1-64573378-1	chr1	64573278	64573478	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037726, intron 4 of 6)	intron (NM_001037726, intron 4 of 6)	40574.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	2.83	1.26	3.42	8.04	9.0	10.66	2.66	6.64	6.49	1.0	7.54	2.51
Merged-chr1-106567661-2	chr1	106567563	106567763	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-21032.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	4.04	10.82	12.55	2.82	0.82	6.9	1.33	4.21	15.74	7.53	7.54	3.45
Merged-chr2-22806478-1	chr2	22806378	22806578	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	32151.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.63	3.52	3.42	0.8	12.27	9.41	5.31	6.31	10.23	6.03	6.03	8.14
Merged-chr8-125184086-1	chr8	125183986	125184186	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129891.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.44	6.04	14.26	2.82	13.09	8.47	7.64	7.82	4.92	9.04	14.07	5.01
Merged-chr18-60815353-2	chr18	60815235	60815435	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011552, intron 22 of 24)	B1_Mur1|SINE|Alu	3259.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	6.06	19.37	5.13	4.42	3.27	1.25	0.66	0.56	3.74	8.54	2.51	1.88
Merged-chr1-173740817-3	chr1	173740719	173740919	+	703.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	990.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	1.62	3.52	1.14	1.21	8.18	12.86	2.99	9.5	12.59	15.57	18.09	7.52
Merged-chr1-86600011-2	chr1	86599927	86600127	+	703.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360887, intron 5 of 6)	intron (NM_001360887, intron 5 of 6)	17106.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	3.23	4.02	6.28	10.46	8.59	8.47	7.97	15.36	5.9	6.53	11.05	9.08
Merged-chr11-97575861-3	chr11	97575763	97575963	+	703.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-737.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	8.88	10.31	9.13	5.63	9.82	21.64	4.98	6.59	12.39	11.55	12.56	10.65
Merged-chr7-30842252-2	chr7	30842178	30842378	+	703.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13900.0	NM_001033316	233080.0	Mm.291167	NM_001033316	ENSMUSG00000019429	Ffar3	Gm478|Gpr41	free fatty acid receptor 3	protein-coding	12.52	5.53	3.99	8.04	2.45	5.64	1.66	4.21	15.93	14.06	6.53	18.8
Merged-chr6-31340143-2	chr6	31340040	31340240	+	703.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58633.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.04	2.26	0.0	0.8	7.36	10.98	4.98	9.98	11.01	10.04	10.55	5.01
Merged-chr14-74646335-2	chr14	74646235	74646435	+	703.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	5461.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	10.09	4.53	10.27	8.04	11.05	12.23	7.64	9.59	9.24	1.0	3.52	3.45
Merged-chr17-29499414-2	chr17	29499289	29499489	+	703.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8344.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	10.9	13.83	7.99	2.01	4.91	8.47	0.66	0.39	9.05	5.02	0.0	1.25
Merged-chr19-47314515-2	chr19	47314435	47314635	+	703.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 7 of 14)	intron (NM_008018, intron 7 of 14)	-40946.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	5.65	5.53	13.12	10.05	8.59	8.15	4.32	2.92	1.77	3.51	1.51	1.57
Merged-chr9-55307756-1	chr9	55307656	55307856	+	703.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19157.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	7.67	1.26	9.13	7.64	11.05	9.41	7.31	5.97	6.69	8.54	5.02	1.88
Merged-chr1-86046352-1	chr1	86046252	86046452	+	703.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001144992, exon 1 of 3)	exon (NM_001144992, exon 1 of 3)	489.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	3.63	6.04	1.71	4.42	7.36	2.51	6.98	6.11	6.49	4.52	9.55	3.45
Merged-chr1-191638930-3	chr1	191638837	191639037	+	703.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	63301.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	9.29	11.32	6.85	7.64	6.55	17.25	7.97	4.4	13.96	6.53	4.02	9.71
Merged-chr11-117989578-3	chr11	117989457	117989657	+	703.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	PB1D10|SINE|Alu	2700.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	9.69	7.55	5.7	2.41	8.59	6.9	10.3	6.79	11.01	8.03	5.53	7.21
Merged-chr14-74918723-3	chr14	74918641	74918841	+	703.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	29136.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.25	9.06	5.7	4.02	3.27	5.33	1.33	3.56	10.82	8.54	8.54	1.25
Merged-chr6-135175677-2	chr6	135175562	135175762	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7447.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	8.08	5.28	6.28	10.46	11.86	9.41	17.94	8.27	1.57	2.01	0.5	0.31
Merged-chr11-11716824-2	chr11	11716726	11716926	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	26649.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.27	2.77	10.27	9.65	4.91	0.94	7.64	9.84	9.24	5.52	4.52	13.78
Merged-chr2-68502412-2	chr2	68502324	68502524	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-30443.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.04	9.81	2.85	11.66	7.36	8.78	6.98	8.44	5.31	1.51	12.06	5.95
Merged-chr8-82399190-2	chr8	82399090	82399290	+	703.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	RSINE1|SINE|B4	3396.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.25	7.55	6.28	1.61	5.73	7.21	7.31	7.85	9.44	10.54	10.05	3.76
Merged-chr1-61160744-1	chr1	61160644	61160844	+	703.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	182830.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.85	5.53	6.85	4.83	5.32	8.47	10.63	5.72	4.52	9.04	9.04	5.01
Merged-chr19-11788026-2	chr19	11787925	11788125	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	17610.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	11.71	4.28	14.26	7.24	14.73	12.23	7.31	6.0	9.83	8.03	8.04	9.08
Merged-chr4-82619742-2	chr4	82619655	82619855	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111766.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	7.27	7.8	15.4	11.26	4.09	3.14	5.98	2.58	8.26	12.05	18.09	8.46
Merged-chr1-151661142-3	chr1	151661041	151661241	+	703.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	89768.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	8.88	4.28	13.12	11.26	6.14	5.33	6.31	12.36	14.95	12.05	11.05	5.33
Merged-chr4-133837196-3	chr4	133837100	133837300	+	703.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	37531.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	12.52	8.8	7.99	3.22	6.95	11.92	2.33	7.12	13.96	14.56	9.55	6.27
Merged-chr4-122885184-3	chr4	122885101	122885301	+	703.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	875.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.04	7.55	4.56	16.09	4.91	3.14	9.63	5.47	9.83	5.02	10.05	7.83
Merged-chr11-120853723-3	chr11	120853630	120853830	+	703.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-29183.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	9.69	13.83	3.99	9.65	7.77	13.17	5.98	3.59	11.41	9.04	23.11	9.4
Merged-chr10-21908173-3	chr10	21908088	21908288	+	703.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	26004.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	3.52	2.85	2.01	4.5	2.82	3.65	3.08	4.92	5.52	6.03	3.45
Merged-chr13-24416568-3	chr13	24416471	24416671	+	703.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	1449.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	8.88	1.76	12.55	11.26	8.59	6.9	13.62	6.76	13.37	19.58	8.54	9.4
Merged-chr10-115323466-2	chr10	115323373	115323573	+	703.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7882.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	7.27	6.54	1.14	11.66	12.27	4.7	4.32	12.2	10.62	12.55	13.06	6.27
Merged-chr11-54627165-3	chr11	54627058	54627258	+	703.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	31012.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	10.5	12.83	9.7	6.44	7.36	21.01	6.31	6.31	16.72	19.58	11.05	4.7
Merged-chr15-6326163-3	chr15	6326145	6326345	+	703.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	26456.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.23	5.28	2.28	1.61	11.86	6.27	1.33	8.86	8.06	3.51	7.54	2.19
Merged-chr11-106082565-2	chr11	106082416	106082616	+	703.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2386.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	2.42	6.04	3.42	1.61	3.27	3.14	2.33	2.05	3.93	10.54	5.02	6.27
Merged-chr6-115380995-2	chr6	115380898	115381098	+	703.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	18649.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	1.62	1.76	4.56	9.25	7.36	8.15	3.32	5.92	9.05	6.03	13.57	7.52
Merged-chr2-164456230-1	chr2	164456130	164456330	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-4741.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	4.44	4.28	1.14	0.0	3.68	9.09	0.33	2.97	10.42	11.55	5.02	10.65
Merged-chr5-28242191-1	chr5	28242091	28242291	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	3597.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	1.21	2.26	8.56	4.83	1.64	3.14	7.31	6.11	6.1	3.01	10.55	2.82
Merged-chr4-133844386-2	chr4	133844295	133844495	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30336.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.63	7.55	7.99	6.44	10.64	9.09	2.99	7.65	9.44	5.02	5.53	3.76
Merged-chrX-53729235-1	chrX	53729135	53729335	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029142, intron 2 of 4)	intron (NM_029142, intron 2 of 4)	4404.0	NM_029142	75013.0	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	2.42	0.25	2.28	0.0	6.95	2.82	4.32	6.06	4.92	9.54	5.02	6.27
Merged-chr8-67986700-1	chr8	67986600	67986800	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12126.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	6.06	4.78	2.85	8.04	1.23	9.09	2.99	4.46	10.42	10.04	11.05	4.7
Merged-chr1-90593038-1	chr1	90592938	90593138	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10387.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	1.21	3.02	0.0	1.21	8.59	4.08	0.0	6.87	5.9	5.02	5.53	8.46
Merged-chr4-141858333-1	chr4	141858233	141858433	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-11974.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	5.65	1.01	5.7	3.62	5.32	2.82	8.3	7.23	4.92	5.02	3.01	2.51
Merged-chr9-33169252-1	chr9	33169152	33169352	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-240286.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	4.44	4.02	5.7	6.84	9.0	1.57	2.33	5.64	1.38	4.52	0.5	0.63
Merged-chr7-88242269-1	chr7	88242169	88242369	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35816.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.86	2.01	1.14	4.42	6.14	4.39	5.65	8.44	6.88	7.53	1.51	2.19
Merged-chr8-36019559-1	chr8	36019459	36019659	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75269.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	4.44	2.52	6.85	3.22	7.77	2.51	4.98	6.7	3.15	0.0	1.0	1.57
Merged-chr6-54737902-1	chr6	54737802	54738002	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56278.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.04	7.55	6.28	5.63	7.77	12.54	4.98	8.8	6.49	7.03	6.53	4.07
Merged-chr2-52906682-2	chr2	52906609	52906809	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	48841.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.23	2.26	3.99	5.23	9.0	4.7	3.65	9.59	10.82	9.54	7.03	4.7
Merged-chr3-129878019-1	chr3	129877919	129878119	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-587.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	2.02	3.27	3.99	9.25	3.68	4.08	6.64	6.81	5.11	5.02	10.55	2.82
Merged-chr15-58410541-1	chr15	58410441	58410641	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4927.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	1.62	3.52	5.7	2.41	2.45	10.35	3.65	5.47	4.72	3.01	3.52	2.19
Merged-chr17-51041069-1	chr17	51040969	51041169	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	118309.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	2.83	0.5	0.0	5.23	7.77	3.14	0.66	6.14	4.33	2.51	5.53	0.63
Merged-chr10-80666640-1	chr10	80666540	80666740	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9569.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	10.09	15.59	4.56	1.21	4.91	13.8	4.65	1.04	11.8	8.54	0.5	1.88
Merged-chr10-21200546-1	chr10	21200446	21200646	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13602.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	2.42	4.53	1.71	3.22	3.27	9.41	3.65	5.83	3.74	1.0	5.02	3.45
Merged-chr15-44598738-1	chr15	44598638	44598838	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20489.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.81	4.02	0.57	6.44	1.64	1.57	5.98	6.28	2.75	5.52	4.02	4.39
Merged-chr12-35051172-2	chr12	35051074	35051274	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3985.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.65	6.79	18.25	10.05	3.68	8.78	0.0	7.43	9.44	10.04	11.56	3.76
Merged-chr2-73004013-1	chr2	73003913	73004113	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23567.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	2.02	3.52	2.28	1.61	2.86	2.51	4.32	6.0	4.72	4.02	3.52	8.14
Merged-chr10-4621206-1	chr10	4621106	4621306	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	9217.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	5.65	3.52	0.0	1.61	2.86	0.0	6.64	3.39	4.13	0.5	1.51	0.63
Merged-chr8-11476336-1	chr8	11476236	11476436	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	B1_Mus2|SINE|Alu	-1593.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	12.11	12.32	7.99	2.82	5.32	8.47	14.95	4.15	5.7	11.05	10.55	9.4
Merged-chr13-114076123-1	chr13	114076023	114076223	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	MER119|DNA|hAT-Charlie	75469.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	4.04	4.53	3.42	7.64	0.0	6.27	4.98	3.53	7.87	10.04	6.53	1.57
Merged-chr14-25768017-1	chr14	25767917	25768117	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	839.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	2.02	2.77	5.13	2.41	3.68	3.45	6.98	5.41	3.15	5.02	11.05	1.57
Merged-chr12-113155458-1	chr12	113155358	113155558	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-963.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	1.62	2.77	1.14	4.42	2.86	5.02	2.33	5.69	3.54	10.04	7.03	1.57
Merged-chr5-36550427-2	chr5	36550337	36550537	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-19814.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.65	3.77	9.7	5.63	11.05	5.96	7.31	12.22	12.39	6.03	6.03	5.01
Merged-chr9-75541792-1	chr9	75541692	75541892	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17865.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	4.04	0.5	2.85	2.01	4.5	2.82	4.98	1.6	3.93	13.56	15.07	10.65
Merged-chr17-15810698-1	chr17	15810598	15810798	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	15888.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.04	2.77	9.13	6.44	4.91	2.51	3.99	5.41	5.31	3.01	3.01	3.76
Merged-chr9-53634984-1	chr9	53634884	53635084	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027807, exon 8 of 19)	exon (NM_027807, exon 8 of 19)	-24634.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	2.42	4.78	12.55	6.44	7.77	3.76	3.32	8.05	8.85	6.03	9.55	3.45
Merged-chr12-98779272-1	chr12	98779172	98779372	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029334, intron 11 of 16)	intron (NM_029334, intron 11 of 16)	8250.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	2.42	5.79	5.7	6.44	1.64	6.27	5.98	7.12	4.13	2.01	10.05	2.51
Merged-chr13-14036401-1	chr13	14036301	14036501	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178337, intron 1 of 16)	L1VL4|LINE|L1	3237.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	3.63	4.02	0.57	1.61	1.64	5.96	1.66	5.66	4.13	3.01	3.01	6.27
Merged-chr15-89180249-1	chr15	89180149	89180349	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	539.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.25	6.04	1.71	4.83	8.18	4.08	5.65	4.09	5.9	6.53	7.03	6.27
Merged-chr19-11858148-1	chr19	11858048	11858248	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2197.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	6.46	2.52	0.0	3.62	4.09	4.08	3.99	5.05	0.39	1.51	0.0	2.82
Merged-chr8-10909946-1	chr8	10909846	10910046	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10024.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	6.86	1.01	3.42	1.21	4.09	5.96	1.99	6.56	2.75	1.51	3.52	2.82
Merged-chr11-51636499-1	chr11	51636399	51636599	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	-603.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	7.67	6.29	2.28	6.03	0.82	10.35	2.66	5.05	7.28	7.53	5.53	5.33
Merged-chr2-113469704-2	chr2	113469619	113469819	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	28655.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.23	2.52	11.98	7.64	4.09	2.82	8.97	7.35	10.82	5.02	12.56	1.88
Merged-chr4-132731773-1	chr4	132731673	132731873	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_201368, intron 1 of 2)	intron (NM_201368, intron 1 of 2)	773.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	3.63	10.06	6.85	12.07	1.64	3.45	6.31	3.84	8.26	5.02	5.02	5.01
Merged-chr13-101722854-1	chr13	101722754	101722954	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-30224.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.23	1.76	1.14	4.83	5.32	0.31	1.0	6.45	4.72	2.51	9.55	3.13
Merged-chr7-113188038-1	chr7	113187938	113188138	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-19427.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.04	1.51	2.85	3.22	0.82	2.2	4.98	5.5	2.36	5.02	3.01	1.25
Merged-chr4-40236789-3	chr4	40236679	40236879	+	702.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	3046.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	6.06	4.53	10.27	4.42	8.18	7.84	9.3	9.36	12.19	10.04	10.05	6.27
Merged-chr10-81289474-3	chr10	81289326	81289526	+	702.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1841.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	4.44	4.78	4.56	11.26	4.5	8.15	4.32	3.95	13.96	8.03	13.06	4.39
Merged-chr13-58319411-3	chr13	58319308	58319508	+	702.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175214, intron 10 of 16)	intron (NM_175214, intron 10 of 16)	-6259.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	10.09	8.3	5.7	9.65	11.05	13.48	5.98	7.91	7.87	8.54	13.57	3.76
Merged-chr3-97737363-2	chr3	97737246	97737446	+	702.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30668.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.23	6.29	2.85	8.45	10.23	11.6	6.98	17.75	6.29	7.03	4.52	5.64
Merged-chr5-99452129-2	chr5	99452020	99452220	+	702.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-199193.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.63	3.02	11.41	2.41	21.27	12.23	7.31	8.55	9.24	16.07	7.54	7.52
Merged-chr6-128837731-3	chr6	128837583	128837783	+	702.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11368.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.85	5.79	2.28	3.62	6.14	5.33	5.65	4.46	7.87	3.01	8.54	8.14
Merged-chr5-125368639-5	chr5	125368515	125368715	+	702.883301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	21402.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.63	8.05	3.99	10.05	3.68	3.45	2.33	3.0	5.11	3.01	5.02	6.89
Merged-chr11-95009834-2	chr11	95009738	95009938	+	702.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146025)	promoter-TSS (NM_146025)	-41.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	14.13	10.82	7.99	10.86	6.95	15.99	5.65	5.33	7.28	4.02	5.53	4.7
Merged-chr5-123023357-2	chr5	123023250	123023450	+	702.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	8276.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	10.09	3.52	4.56	8.85	11.45	11.6	5.65	10.65	6.49	6.03	4.02	6.89
Merged-chr8-108393077-2	chr8	108392983	108393183	+	702.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	191594.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.42	4.78	2.85	9.65	7.77	7.84	5.98	6.39	11.41	13.05	19.09	9.4
Merged-chr17-33678987-2	chr17	33678894	33679094	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109913, intron 1 of 16)	intron (NM_001109913, intron 1 of 16)	6464.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	8.48	7.55	7.99	2.82	11.05	13.17	2.33	7.09	11.41	5.02	8.04	2.82
Merged-chr1-51805294-2	chr1	51805209	51805409	+	702.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010863, intron 7 of 29)	intron (NM_010863, intron 7 of 29)	110669.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.83	5.53	12.55	8.85	4.5	7.84	7.97	10.79	5.31	13.05	7.54	7.21
Merged-chr19-41206914-2	chr19	41206791	41206991	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011904)	promoter-TSS (NM_011904)	-117.0	NM_011904	24087.0	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	10.9	4.78	6.85	18.1	6.14	4.7	6.31	2.8	4.52	7.53	11.56	3.76
Merged-chr5-17839357-2	chr5	17839263	17839463	+	702.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	Lx5b|LINE|L1	-3467.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	9.29	5.03	6.28	6.44	9.41	2.82	10.63	7.91	12.0	6.03	8.04	9.4
Merged-chr7-92879725-2	chr7	92879623	92879823	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	B1F2|SINE|Alu	4470.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	8.08	5.03	14.26	6.44	15.14	8.78	3.32	8.41	6.29	14.06	8.04	5.64
Merged-chr15-25562305-2	chr15	25562174	25562374	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60276.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	11.71	6.29	5.7	5.23	8.18	1.88	6.98	1.91	3.74	1.0	5.53	4.39
Merged-chr11-101627167-2	chr11	101627072	101627272	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-777.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	12.92	8.55	8.56	5.63	7.77	5.33	5.65	1.82	10.42	4.52	10.05	3.13
Merged-chr18-35467764-3	chr18	35467684	35467884	+	702.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	2168.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	6.86	9.06	7.99	2.41	6.14	15.05	2.33	7.07	9.05	9.54	10.05	4.07
Merged-chrX-163848991-3	chrX	163848903	163849103	+	702.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-60014.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.81	10.06	10.84	10.05	4.91	2.82	1.99	4.46	11.6	1.51	20.1	6.58
Merged-chr17-10317375-3	chr17	10317285	10317485	+	702.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	1976.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	7.27	9.56	3.42	8.85	10.23	21.95	2.66	6.56	7.28	8.54	9.04	5.95
Merged-chrX-57326393-6	chrX	57326276	57326476	+	702.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001358573, exon 1 of 21)	5' UTR (NM_001358573, exon 1 of 21)	225.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	2.83	3.77	3.42	7.24	3.27	4.08	2.66	4.63	2.56	2.51	5.53	3.76
Merged-chrX-74353629-3	chrX	74353518	74353718	+	702.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025410)	promoter-TSS (NM_025410)	0.0	NM_025410	66192.0	Mm.21705	NM_025410	ENSMUSG00000015289	Lage3	1110049G11Rik|Eso3|Itba2	L antigen family, member 3	protein-coding	8.08	8.8	7.99	8.04	4.91	11.6	5.65	10.23	10.42	3.51	10.05	4.7
Merged-chr8-116264634-2	chr8	116264545	116264745	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-240370.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.42	2.01	4.56	7.64	4.91	5.64	8.97	6.76	14.55	9.04	11.56	6.89
Merged-chr2-38481952-2	chr2	38481860	38482060	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1C|DNA|hAT-Tip100	-29737.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	8.48	1.76	2.85	7.64	6.14	2.51	6.64	10.43	4.92	7.03	5.53	13.47
Merged-chr3-52242690-2	chr3	52242573	52242773	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	-25664.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.25	5.53	3.42	2.41	7.36	6.9	3.32	7.79	8.85	7.03	12.06	4.39
Merged-chr5-114747679-2	chr5	114747586	114747786	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077359, intron 13 of 18)	intron (NM_001077359, intron 13 of 18)	25805.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	5.25	1.76	6.85	5.23	4.91	2.51	6.31	7.79	8.65	2.01	7.54	7.83
Merged-chr18-67825459-3	chr18	67825344	67825544	+	702.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027556, intron 14 of 45)	MIRb|SINE|MIR	25337.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	10.09	3.52	12.55	4.83	6.55	3.14	10.3	7.79	9.24	8.54	10.05	6.27
Merged-chr6-116725467-3	chr6	116725364	116725564	+	702.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8706.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	10.5	5.79	3.99	9.65	17.59	9.72	4.98	7.65	16.52	10.04	17.08	7.52
Merged-chr8-104344199-4	chr8	104344076	104344276	+	702.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024217, intron 2 of 4)	intron (NM_024217, intron 2 of 4)	3582.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	10.5	9.31	6.85	7.64	4.5	7.21	3.32	8.58	6.1	15.57	16.08	10.96
Merged-chr17-28515949-1	chr17	28515849	28516049	+	702.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	4.44	1.51	1.14	4.83	6.14	3.76	6.98	4.35	2.95	2.01	6.03	1.88
Merged-chr7-66080334-3	chr7	66080246	66080446	+	702.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024439, exon 2 of 6)	exon (NM_024439, exon 2 of 6)	697.0	NM_024439	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	8.08	11.32	5.7	4.02	8.18	9.09	9.97	5.27	15.54	7.03	15.58	5.64
Merged-chr9-106156604-1	chr9	106156504	106156704	+	702.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039586, intron 3 of 4)	intron (NM_001039586, intron 3 of 4)	1534.0	NM_001039586	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	5.25	7.55	2.85	4.02	6.55	5.96	7.97	5.94	3.54	3.01	0.0	0.31
Merged-chr3-104994034-2	chr3	104993931	104994131	+	702.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32322.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	8.88	3.52	5.13	7.24	6.55	7.84	9.97	9.7	4.52	6.53	11.05	12.22
Merged-chr17-47598184-2	chr17	47598077	47598277	+	702.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 6 of 6)	AT_rich|Low_complexity|Low_complexity	4710.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	10.09	8.05	3.42	1.61	8.18	10.03	0.66	4.71	8.26	8.54	3.52	2.82
Merged-chr6-82715835-2	chr6	82715739	82715939	+	702.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58615.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.83	5.53	6.85	0.8	5.73	7.21	4.98	6.42	12.78	3.01	10.55	9.4
Merged-chr7-31000806-2	chr7	31000693	31000893	+	702.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18872.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	2.83	6.54	11.41	1.61	13.5	5.96	5.65	8.13	9.24	14.56	7.54	9.4
Merged-chr3-35933566-3	chr3	35933478	35933678	+	702.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-612.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	12.52	9.06	14.83	14.08	16.77	11.29	5.31	6.56	12.98	11.05	9.55	8.46
Merged-chr2-13415652-2	chr2	13415553	13415753	+	702.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	76223.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	5.65	5.03	6.85	4.83	7.77	7.53	8.64	7.23	8.46	6.03	10.55	10.34
Merged-chr8-95833793-3	chr8	95833682	95833882	+	702.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19709.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	6.46	8.05	10.27	10.46	11.86	8.78	2.66	12.53	4.92	5.52	12.06	7.83
Merged-chr1-175936620-3	chr1	175936509	175936709	+	702.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16280.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	7.27	7.29	11.98	12.47	8.59	7.53	4.65	7.93	8.85	6.03	11.56	9.71
Merged-chr6-129615977-3	chr6	129615882	129616082	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083322, intron 5 of 7)	intron (NM_001083322, intron 5 of 7)	6701.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	8.88	6.79	0.57	10.46	6.95	10.03	5.31	9.06	7.28	4.52	7.54	7.83
Merged-chr1-74702457-2	chr1	74702360	74702560	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-11075.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	8.48	3.77	18.83	6.84	6.95	4.39	5.65	10.12	7.28	2.01	5.53	6.58
Merged-chr15-96288614-1	chr15	96288514	96288714	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175251, intron 2 of 20)	intron (NM_175251, intron 2 of 20)	1092.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	4.44	2.52	3.99	3.62	4.09	4.08	4.65	5.86	6.69	2.01	7.03	10.65
Merged-chr4-105245839-3	chr4	105245774	105245974	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88527.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.46	13.08	13.12	3.22	5.32	6.9	2.99	4.99	17.51	17.57	17.08	10.96
Merged-chr19-12464855-2	chr19	12464762	12464962	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	4083.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	18.57	9.81	11.41	6.03	8.59	14.11	4.98	5.89	10.42	16.57	9.55	7.52
Merged-chr11-62538810-2	chr11	62538712	62538912	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028448, intron 1 of 4)	CpG	449.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	5.65	8.05	7.42	1.61	7.77	5.33	5.98	6.28	9.24	3.51	7.54	6.58
Merged-chr2-157399860-1	chr2	157399760	157399960	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-24433.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.44	7.8	7.42	7.24	7.77	8.47	5.31	4.6	2.16	2.01	3.52	2.51
Merged-chr2-27760448-1	chr2	27760348	27760548	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49865.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.02	4.02	4.56	1.61	6.95	3.14	3.99	7.29	6.88	9.04	2.01	2.19
Merged-chr8-123021961-1	chr8	123021861	123022061	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	20323.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.44	1.26	6.28	3.62	8.18	4.7	1.0	4.68	3.74	11.05	7.54	4.39
Merged-chr1-37638774-3	chr1	37638663	37638863	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	81048.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	5.25	7.55	6.85	12.07	6.14	5.64	6.31	16.54	9.44	2.01	11.05	4.07
Merged-chr2-125282528-2	chr2	125282423	125282623	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35008.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	2.42	6.54	2.85	4.02	7.77	5.33	9.97	9.42	6.49	4.52	11.05	1.88
Merged-chr15-83465251-2	chr15	83465135	83465335	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-629.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	10.9	7.55	9.13	10.46	8.59	5.96	2.66	6.03	7.87	11.55	5.53	2.51
Merged-chr6-91510417-2	chr6	91510322	91510522	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	5466.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	6.06	5.03	2.28	0.8	5.73	3.14	5.65	5.92	6.49	4.02	12.06	9.71
Merged-chr17-84698909-1	chr17	84698809	84699009	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_104382, exon 13 of 14)	non-coding (NR_104382, exon 13 of 14)	15788.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	6.06	1.76	3.42	5.63	3.27	3.45	4.65	5.97	4.92	5.02	5.02	4.7
Merged-chr12-28589568-1	chr12	28589468	28589668	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7085.0	NM_053156	94041.0	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	5.25	4.02	4.56	9.25	6.14	11.29	3.99	7.23	6.29	6.03	8.54	6.89
Merged-chr6-49236508-2	chr6	49236408	49236608	+	702.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-21554.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	19.38	20.12	14.83	10.46	3.27	10.03	3.32	5.36	10.42	10.04	24.12	12.84
Merged-chr1-59584898-2	chr1	59584810	59585010	+	702.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	60616.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	8.48	5.03	2.28	4.83	8.59	8.15	11.29	9.73	7.87	3.01	10.05	2.82
Merged-chr19-47168342-3	chr19	47168247	47168447	+	702.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10473.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	14.13	12.32	8.56	9.65	5.73	13.17	3.99	5.27	12.59	11.55	11.05	8.46
Merged-chr7-12903837-2	chr7	12903714	12903914	+	702.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001001447, exon 2 of 3)	exon (NM_001001447, exon 2 of 3)	6005.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	5.65	4.02	11.41	0.4	5.32	5.33	11.96	9.39	6.29	3.01	2.51	2.51
Merged-chr11-117792577-5	chr11	117792456	117792656	+	702.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195088, exon 16 of 16)	exon (NM_001195088, exon 16 of 16)	-5104.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	7.27	6.29	5.7	4.83	4.5	3.45	3.32	2.78	3.54	4.02	6.03	2.51
Merged-chr1-21086413-2	chr1	21086294	21086494	+	702.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7169.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	8.08	8.3	4.56	7.24	1.64	0.94	7.97	3.84	1.57	5.02	3.01	3.45
Merged-chr7-81162566-2	chr7	81162472	81162672	+	702.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004184, intron 12 of 17)	intron (NM_001004184, intron 12 of 17)	47773.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	6.46	5.53	6.85	8.04	9.82	6.27	1.0	5.33	14.16	13.56	16.08	5.95
Merged-chr1-167268709-2	chr1	167268614	167268814	+	702.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	16413.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	2.02	9.31	0.0	8.45	6.55	6.27	9.63	7.18	1.18	7.03	2.01	1.88
Merged-chr7-64210795-2	chr7	64210689	64210889	+	702.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039104, intron 9 of 26)	intron (NM_001039104, intron 9 of 26)	4983.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	9.29	5.28	3.99	12.07	9.41	4.39	7.97	9.34	3.34	6.03	20.1	3.45
Merged-chr3-123515787-3	chr3	123515683	123515883	+	702.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7447.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	1.62	7.8	4.56	10.86	11.45	8.47	3.32	8.41	9.24	8.03	12.56	5.01
Merged-chr2-24950210-3	chr2	24950117	24950317	+	702.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	59.0	NM_147179	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	5.65	12.07	7.99	8.04	4.5	9.09	2.99	7.26	10.82	3.01	7.54	6.58
Merged-chr8-70543263-1	chr8	70543163	70543363	+	702.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	3588.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.44	0.5	9.13	2.41	6.55	5.33	8.64	5.05	4.72	8.03	7.54	6.58
Merged-chr2-73459924-3	chr2	73459853	73460053	+	702.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6064.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	15.75	9.06	9.13	12.07	5.73	15.99	10.3	1.96	12.98	11.05	10.55	1.88
Merged-chr15-97338033-1	chr15	97337933	97338133	+	702.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	RMER17C|LTR|ERVK	-90746.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.65	3.02	5.7	4.02	2.86	3.76	2.33	4.57	9.64	17.57	27.64	10.34
Merged-chr6-54934494-1	chr6	54934394	54934594	+	702.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	37167.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.42	1.26	1.14	3.22	3.68	6.27	4.32	5.64	3.54	4.52	2.51	4.7
Merged-chr1-151625903-3	chr1	151625801	151626001	+	702.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54528.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	16.96	6.54	7.99	18.1	8.18	12.86	6.98	11.16	8.65	9.04	9.04	10.02
Merged-chr1-94681007-2	chr1	94680902	94681102	+	702.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-116440.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	1.62	2.52	5.7	7.24	6.55	5.96	7.64	14.86	9.05	11.55	9.55	11.9
Merged-chr9-61277781-2	chr9	61277664	61277864	+	702.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	16045.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	5.65	7.04	4.56	9.65	4.5	7.21	2.99	8.1	9.05	11.55	12.56	7.83
Merged-chr3-149072811-1	chr3	149072711	149072911	+	702.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-118176.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.42	2.01	3.99	5.63	6.55	4.7	4.65	8.44	5.7	4.52	1.51	3.13
Merged-chr8-36936550-3	chr8	36936467	36936667	+	702.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	15875.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.04	8.05	15.4	11.26	5.32	6.9	13.62	17.33	13.18	10.04	6.53	5.95
Merged-chr4-134919840-3	chr4	134919738	134919938	+	702.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3787.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.46	2.77	12.55	2.41	7.77	2.82	7.97	7.26	8.85	15.06	9.04	7.52
Merged-chr15-55356194-2	chr15	55356106	55356306	+	702.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 5 of 47)	intron (NM_181277, intron 5 of 47)	48456.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.25	4.28	6.85	5.63	7.36	9.41	12.62	10.43	4.13	9.54	6.53	9.71
Merged-chr14-69088678-1	chr14	69088578	69088778	+	702.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59389.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	6.46	2.52	5.13	4.42	11.86	9.72	7.64	6.11	14.16	2.51	4.02	3.45
Merged-chr2-167950379-3	chr2	167950279	167950479	+	702.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	18052.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.06	10.82	5.7	8.85	9.82	5.96	11.96	10.18	11.8	1.0	9.55	8.14
Merged-chr9-109055577-2	chr9	109055447	109055647	+	702.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	681.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.46	13.83	6.85	4.42	5.73	11.6	1.99	1.32	12.78	9.04	10.55	7.83
Merged-chr13-23521925-2	chr13	23521830	23522030	+	702.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-9114.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	8.08	8.3	3.42	6.44	6.55	6.27	7.97	11.02	7.08	3.01	16.58	7.52
Merged-chr11-53748196-2	chr11	53748098	53748298	+	702.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15456.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	7.27	6.54	2.85	7.64	13.09	8.15	4.32	7.09	15.74	5.02	6.03	6.58
Merged-chr2-25580763-2	chr2	25580637	25580837	+	702.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005424)	promoter-TSS (NM_001005424)	-638.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	4.44	1.76	2.28	1.61	2.45	9.09	4.65	4.77	8.85	4.02	12.06	7.21
Merged-chr13-109262628-3	chr13	109262514	109262714	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	UCON26|Unknown|Unknown	-62130.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	10.09	5.03	6.28	10.86	11.45	5.96	18.27	16.96	7.08	6.53	12.56	8.14
Merged-chr14-122019388-3	chr14	122019298	122019498	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-15276.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	3.23	5.28	2.85	10.05	1.23	3.14	4.65	4.04	9.24	7.03	13.57	9.08
Merged-chr4-42877071-3	chr4	42876967	42877167	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2833.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	11.71	8.55	15.97	4.83	6.55	11.29	2.66	11.89	25.57	9.54	17.08	11.59
Merged-chr2-62654728-3	chr2	62654626	62654826	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8471.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	10.5	13.33	10.27	6.03	11.45	8.78	7.31	13.43	11.8	14.06	12.56	9.71
Merged-chr5-92245682-2	chr5	92245589	92245789	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011148, intron 7 of 16)	intron (NM_011148, intron 7 of 16)	10589.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	3.63	6.79	1.14	8.85	6.55	8.15	5.31	20.38	3.93	1.0	2.01	7.52
Merged-chr3-146343834-1	chr3	146343734	146343934	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35110.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	6.86	2.01	1.14	5.63	6.95	5.33	2.99	7.35	6.49	6.53	14.57	4.7
Merged-chr5-21355164-2	chr5	21355064	21355264	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17509.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	2.42	2.01	1.14	8.04	8.18	3.45	7.31	8.52	9.24	9.04	4.52	5.64
Merged-chr8-91357699-2	chr8	91357594	91357794	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	44169.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	5.25	7.29	1.14	6.44	9.0	4.08	1.33	7.12	12.0	9.04	8.54	5.95
Merged-chr14-30869456-1	chr14	30869356	30869556	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-9801.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	8.48	1.51	2.28	1.61	8.59	2.82	1.33	5.78	2.16	1.0	3.52	3.76
Merged-chr13-28419069-1	chr13	28418969	28419169	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	276585.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.81	2.26	2.28	0.8	8.18	6.59	2.33	5.1	2.36	7.53	3.52	1.25
Merged-chr12-10438222-1	chr12	10438122	10438322	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8166.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	2.42	6.54	9.13	2.41	6.14	11.92	3.99	6.62	4.52	4.52	4.02	3.45
Merged-chr3-108883735-2	chr3	108883630	108883830	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	6278.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	8.08	5.53	9.13	12.87	8.18	2.51	1.99	9.64	5.31	5.02	2.51	4.7
Merged-chr12-69411044-1	chr12	69410944	69411144	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38894.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.23	0.5	4.56	6.84	1.64	2.82	6.31	7.4	1.57	8.03	2.01	0.94
Merged-chr8-108596195-1	chr8	108596095	108596295	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11518.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.02	0.5	1.14	1.61	4.5	5.33	2.66	6.5	3.15	0.5	1.51	1.57
Merged-chr19-10456914-2	chr19	10456842	10457042	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001111140, exon 1 of 1)	exon (NM_001111140, exon 1 of 1)	505.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	4.85	5.03	10.84	11.66	3.68	4.7	4.65	6.36	2.36	2.51	4.02	5.01
Merged-chr13-45966346-1	chr13	45966246	45966446	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1355.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	2.02	5.79	3.42	1.61	8.18	7.53	1.33	2.58	6.49	14.06	12.56	2.82
Merged-chr1-166342770-1	chr1	166342670	166342870	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36397.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	2.42	1.01	10.27	4.02	8.59	8.78	1.99	1.96	5.7	13.05	5.53	4.07
Merged-chr15-71917871-1	chr15	71917771	71917971	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027174, intron 23 of 63)	intron (NM_027174, intron 23 of 63)	116356.0	NM_027174	69700.0	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	5.65	2.77	6.28	2.01	4.09	5.33	7.97	6.17	1.57	0.0	7.03	2.82
Merged-chr4-101253059-1	chr4	101252959	101253159	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	12223.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.85	4.53	7.42	4.02	5.73	5.64	0.66	7.26	7.08	6.53	1.51	5.01
Merged-chr10-117805330-1	chr10	117805230	117805430	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12625.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.4	3.52	4.56	2.82	2.05	1.57	5.98	6.06	3.54	3.01	3.52	3.76
Merged-chr12-116141435-1	chr12	116141335	116141535	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009511, intron 10 of 12)	MTC|LTR|ERVL-MaLR	63709.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	2.42	3.27	1.14	2.82	8.18	1.57	5.98	6.34	11.41	7.53	8.04	7.83
Merged-chr13-75709325-2	chr13	75709225	75709425	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1841.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	6.06	2.52	0.0	4.02	3.27	8.15	6.64	3.06	8.85	4.52	6.03	3.45
Merged-chr4-24720985-2	chr4	24720884	24721084	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163020, intron 4 of 10)	intron (NM_001163020, intron 4 of 10)	130140.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	9.69	11.07	7.99	7.24	6.55	3.45	1.66	8.07	0.98	7.03	6.03	2.51
Merged-chr1-191131912-2	chr1	191131813	191132013	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32904.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	10.09	5.79	5.7	3.62	11.05	5.64	11.96	7.91	5.51	11.05	7.03	9.08
Merged-chr12-80855489-1	chr12	80855389	80855589	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	64957.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	2.02	5.79	16.54	2.82	5.32	1.88	7.64	5.69	5.51	0.5	3.52	0.63
Merged-chr5-139725201-1	chr5	139725101	139725301	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	11132.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.04	1.51	2.85	3.22	2.86	3.14	0.66	0.53	5.31	5.02	6.03	7.83
Merged-chr10-99417190-1	chr10	99417090	99417290	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153959.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	2.02	3.27	2.28	1.61	0.82	0.63	3.99	5.02	1.77	0.5	1.51	1.25
Merged-chr1-155095339-1	chr1	155095239	155095439	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4297.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	5.25	9.06	5.13	11.26	2.05	5.33	0.66	3.2	3.93	3.51	5.02	3.76
Merged-chr6-129153982-1	chr6	129153882	129154082	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-26633.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.88	11.05	16.58	5.95
Merged-chr12-77791473-1	chr12	77791373	77791573	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	381332.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	7.27	1.26	5.7	2.41	6.14	2.2	0.66	8.19	3.34	3.01	12.56	1.25
Merged-chr4-82918837-2	chr4	82918746	82918946	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154662, intron 28 of 35)	intron (NR_154662, intron 28 of 35)	-33695.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	2.42	11.57	7.99	7.24	4.5	3.14	10.63	9.14	5.11	2.01	3.01	1.57
Merged-chr10-121291850-1	chr10	121291750	121291950	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	19546.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.25	1.26	3.42	2.41	4.09	5.96	2.99	5.52	2.56	0.0	2.01	0.0
Merged-chr10-20818715-1	chr10	20818615	20818815	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93637.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.81	1.51	2.28	0.8	0.41	5.64	7.97	4.99	1.18	5.02	5.53	0.63
Merged-chr5-92502975-1	chr5	92502875	92503075	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	Arthur1A|DNA|hAT-Tip100	2682.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	2.02	1.01	0.0	2.41	5.73	5.96	1.66	4.93	2.56	9.04	3.01	5.64
Merged-chrX-94625332-1	chrX	94625232	94625432	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10737.0	NM_008179	14853.0	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	4.04	8.05	8.56	7.24	3.27	7.84	5.65	8.3	0.0	2.01	0.0	0.94
Merged-chr19-41322419-1	chr19	41322319	41322519	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-58415.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.04	0.0	5.7	4.02	3.27	7.84	0.66	5.36	8.26	3.01	1.0	3.45
Merged-chr3-153973576-1	chr3	153973476	153973676	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081263, exon 1 of 22)	5' UTR (NM_001081263, exon 1 of 22)	140.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	3.63	3.52	6.85	5.63	9.0	3.14	2.99	6.11	3.54	0.5	10.05	4.07
Merged-chr15-86186776-1	chr15	86186676	86186876	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	-635.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	4.85	1.01	6.85	2.82	2.05	2.2	4.98	5.5	2.75	4.02	6.53	4.39
Merged-chr6-131316607-1	chr6	131316507	131316707	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2780.0	NM_172891	243659.0	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	5.25	0.0	5.7	2.01	1.64	3.45	4.32	6.36	0.0	0.0	1.51	1.88
Merged-chr12-39200124-1	chr12	39200024	39200224	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	416413.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.85	0.75	0.0	2.41	4.91	5.33	3.99	6.93	3.15	1.51	0.0	0.0
Merged-chr13-44418846-2	chr13	44418738	44418938	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20889.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.86	9.56	2.28	2.01	9.41	8.15	6.31	4.65	16.33	12.55	9.04	5.01
Merged-chr4-156034942-1	chr4	156034842	156035042	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029264, exon 15 of 15)	exon (NM_029264, exon 15 of 15)	8620.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	2.83	4.02	1.71	4.02	2.86	4.7	7.31	1.49	4.72	7.03	4.02	4.7
Merged-chr6-17726249-1	chr6	17726149	17726349	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-17343.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	2.42	5.03	1.71	2.41	6.14	8.78	4.32	7.4	5.51	2.51	3.01	4.07
Merged-chr18-61419837-2	chr18	61419717	61419917	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19386.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	11.31	8.05	3.99	4.42	8.18	6.27	4.98	2.75	3.34	3.01	3.01	2.19
Merged-chr2-166483856-1	chr2	166483756	166483956	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	36405.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	3.23	2.52	4.56	1.61	5.73	6.27	3.32	5.78	7.87	0.0	4.02	7.52
Merged-chr1-37492548-1	chr1	37492448	37492648	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3943.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	4.85	9.81	7.99	4.42	8.18	6.27	2.33	0.87	3.74	7.03	12.56	8.46
Merged-chr8-75092843-2	chr8	75092750	75092950	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-768.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.86	7.29	0.57	2.01	5.32	12.54	11.96	4.23	10.62	12.55	4.02	5.01
Merged-chr5-101970156-1	chr5	101970056	101970256	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	99765.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.81	2.52	4.56	0.0	3.27	0.63	0.0	2.3	3.15	2.01	2.51	0.63
Merged-chr13-5867301-1	chr13	5867201	5867401	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	5812.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.65	5.28	2.28	8.04	4.91	11.92	3.32	3.03	4.52	9.04	5.53	8.46
Merged-chr10-23815300-1	chr10	23815200	23815400	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	18314.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	4.04	4.53	6.85	1.21	1.23	4.08	5.98	7.71	3.74	2.01	5.53	5.01
Merged-chr6-72116905-1	chr6	72116805	72117005	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	C-rich|Low_complexity|Low_complexity	6035.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	10.09	4.53	10.27	6.44	3.27	5.96	6.64	7.96	7.08	8.54	2.51	2.19
Merged-chr4-62275017-3	chr4	62274895	62275095	+	701.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11434.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.25	6.54	10.27	4.42	7.36	6.59	7.64	7.04	12.0	10.04	13.57	7.83
Merged-chr7-99965367-3	chr7	99965360	99965560	+	701.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	14998.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	2.83	3.27	4.56	2.41	9.0	4.39	6.64	3.17	3.54	2.51	3.52	1.57
Merged-chr13-54072684-2	chr13	54072592	54072792	+	701.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	847.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	8.88	14.84	7.42	1.61	9.41	22.58	6.64	3.5	35.6	36.15	12.56	14.1
Merged-chr8-85007901-3	chr8	85007829	85008029	+	701.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_052011, exon 10 of 10)	non-coding (NR_052011, exon 10 of 10)	6479.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	7.67	6.04	4.56	3.22	12.27	10.66	6.64	5.24	15.93	9.04	5.02	8.14
Merged-chr2-156421676-2	chr2	156421586	156421786	+	701.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013510, intron 1 of 21)	intron (NM_013510, intron 1 of 21)	777.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	8.08	4.53	5.7	10.05	7.36	12.23	11.63	9.79	9.64	4.02	5.02	5.33
Merged-chr17-73096698-2	chr17	73096591	73096791	+	701.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11294.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.04	7.8	1.14	6.44	14.32	14.74	7.31	8.19	14.75	9.54	11.56	13.16
Merged-chr2-5966199-2	chr2	5966102	5966302	+	701.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081132, intron 3 of 21)	intron (NM_001081132, intron 3 of 21)	14733.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.44	8.3	10.27	8.04	14.32	13.48	2.99	8.13	5.7	11.05	10.55	12.84
Merged-chr12-54448401-2	chr12	54448301	54448501	+	701.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57083.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	4.85	3.02	2.28	3.22	9.41	6.27	5.31	5.38	8.46	6.53	13.06	13.78
Merged-chr7-75786221-3	chr7	75786159	75786359	+	701.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62079.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.46	2.52	15.4	3.62	9.41	10.98	4.98	7.71	8.65	6.03	6.03	3.76
Merged-chr11-107468314-3	chr11	107468192	107468392	+	701.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	2428.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	8.48	2.52	6.85	5.23	4.5	5.96	7.31	5.97	7.47	12.05	6.53	10.34
Merged-chr19-60895566-3	chr19	60895451	60895651	+	701.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	5802.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.85	7.8	19.97	12.47	3.68	3.76	4.98	10.93	5.11	3.01	8.54	5.95
Merged-chr9-106370029-1	chr9	106369929	106370129	+	701.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153459, intron 1 of 2)	intron (NM_153459, intron 1 of 2)	1397.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.44	5.28	2.85	4.02	4.09	3.45	3.99	2.21	6.1	15.57	7.03	3.76
Merged-chr14-61328130-1	chr14	61328030	61328230	+	701.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18377.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	6.46	2.52	2.28	1.61	11.05	7.53	7.64	6.62	2.75	5.52	5.53	4.07
Merged-chr11-68707204-3	chr11	68707092	68707292	+	701.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	15277.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	8.08	5.53	1.14	10.05	10.23	13.17	8.97	10.01	10.03	9.04	12.56	3.76
Merged-chr13-113381931-3	chr13	113381824	113382024	+	701.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120920.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	9.29	1.26	3.42	8.85	11.05	10.66	9.63	19.71	12.0	8.03	11.05	7.21
Merged-chrX-155249435-2	chrX	155249331	155249531	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13012.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	3.23	3.77	3.99	0.4	3.68	5.64	7.31	8.55	6.49	1.0	6.03	5.01
Merged-chr5-118614752-1	chr5	118614652	118614852	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54033.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.25	6.29	2.28	14.48	11.86	9.41	4.65	5.5	3.93	3.51	6.53	6.27
Merged-chr13-111824374-2	chr13	111824270	111824470	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15377.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.27	1.51	5.7	2.41	16.77	11.6	5.65	15.14	7.67	4.52	7.03	7.52
Merged-chr10-80880496-2	chr10	80880355	80880555	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081688, intron 1 of 17)	intron (NM_001081688, intron 1 of 17)	639.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	6.86	4.02	6.28	3.62	4.5	8.15	5.31	2.89	7.87	4.52	11.56	4.07
Merged-chr5-123125797-1	chr5	123125697	123125897	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	6832.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	8.08	2.26	6.28	2.41	8.18	7.53	5.31	7.63	7.28	14.06	7.03	8.46
Merged-chr5-21326685-1	chr5	21326585	21326785	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-45988.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	2.83	6.54	5.13	4.83	9.0	12.54	5.31	6.17	8.06	12.55	17.59	4.7
Merged-chr15-67101520-3	chr15	67101417	67101617	+	701.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75365.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	5.65	7.04	10.27	7.64	9.82	7.84	6.31	13.46	7.67	9.54	7.03	5.95
Merged-chr3-30515157-1	chr3	30515057	30515257	+	701.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-5482.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	3.63	6.29	2.85	1.61	8.59	8.47	14.28	8.86	2.36	5.02	5.02	1.25
Merged-chr11-44544217-2	chr11	44544116	44544316	+	701.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	RSINE1|SINE|B4	24839.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	2.42	2.26	2.28	3.22	7.77	5.96	4.65	8.5	8.85	6.53	10.05	9.71
Merged-chr11-48859243-2	chr11	48859150	48859350	+	701.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12170.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	1.62	5.53	1.14	5.23	5.32	8.78	2.99	8.24	10.42	5.52	5.02	7.83
Merged-chr4-136511813-2	chr4	136511704	136511904	+	701.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	42043.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.44	3.27	1.71	12.07	7.36	5.02	6.31	5.41	12.39	15.06	16.58	8.46
Merged-chr14-62466507-3	chr14	62466400	62466600	+	701.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10211.0	NM_172810	239134.0	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	9.69	7.04	26.24	12.47	2.05	10.03	1.99	5.61	9.83	0.5	12.56	1.25
Merged-chr8-69938494-2	chr8	69938384	69938584	+	701.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	35899.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.83	4.02	6.28	11.66	10.23	8.47	7.64	6.53	8.06	7.03	14.07	8.46
Merged-chr8-70617766-3	chr8	70617703	70617903	+	701.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153074, exon 2 of 3)	exon (NM_153074, exon 2 of 3)	959.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	15.75	9.81	12.55	5.23	4.91	6.27	7.97	4.49	12.98	9.54	10.55	5.95
Merged-chr2-158161833-3	chr2	158161724	158161924	+	701.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15432.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	2.02	4.53	6.85	9.25	11.05	5.96	12.95	20.3	8.46	5.52	15.58	9.08
Merged-chr10-81494844-3	chr10	81494737	81494937	+	701.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	1526.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	6.06	6.54	23.39	8.85	11.45	21.32	5.65	8.72	9.83	11.05	9.04	5.64
Merged-chr11-31900688-3	chr11	31900550	31900750	+	701.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	29710.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	8.48	2.52	5.7	6.84	6.95	5.02	2.33	3.81	12.98	20.08	12.56	10.65
Merged-chr17-79661609-3	chr17	79661548	79661748	+	701.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	46748.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	8.88	11.07	10.27	9.25	8.59	5.33	6.31	9.81	7.47	9.54	23.62	5.95
Merged-chr14-51266302-3	chr14	51266204	51266404	+	701.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10192.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	11.71	8.3	11.98	4.42	11.05	10.66	3.65	5.55	14.95	9.54	29.14	4.7
Merged-chr2-122454185-3	chr2	122454098	122454298	+	701.516663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356532, intron 10 of 17)	intron (NM_001356532, intron 10 of 17)	13378.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	13.73	8.8	12.55	8.85	9.41	8.15	13.95	24.98	9.05	4.02	11.56	12.22
Merged-chr7-81116539-1	chr7	81116439	81116639	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001004184, exon 3 of 18)	exon (NM_001004184, exon 3 of 18)	1740.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	9.69	11.07	26.81	14.08	0.0	0.31	0.66	0.31	0.0	0.5	1.0	1.88
Merged-chr15-99415946-2	chr15	99415857	99416057	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	22738.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.63	5.03	5.7	7.24	6.95	14.42	2.33	5.36	13.96	13.05	5.02	5.64
Merged-chr2-125660176-1	chr2	125660076	125660276	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 6 of 11)	intron (NM_199022, intron 6 of 11)	-12924.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	6.86	2.01	2.85	4.83	6.14	7.84	1.33	6.67	7.67	5.02	8.04	5.64
Merged-chr1-84183015-1	chr1	84182915	84183115	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	35946.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	3.63	1.01	0.0	2.41	4.09	5.64	1.33	7.91	2.56	1.0	2.51	2.82
Merged-chr2-4557238-3	chr2	4557152	4557352	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-2502.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.23	6.79	15.97	9.65	6.55	7.53	13.62	9.9	7.67	3.51	10.05	1.88
Merged-chr11-83686466-2	chr11	83686367	83686567	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17589.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	4.5	11.29	10.96	7.01	9.83	6.53	10.05	9.4
Merged-chr15-64279412-2	chr15	64279319	64279519	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33254.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	2.42	6.04	15.4	14.88	6.95	3.76	4.65	5.58	3.54	2.51	2.51	4.7
Merged-chr7-49001705-1	chr7	49001605	49001805	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42632.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.86	2.26	3.42	6.44	3.68	8.78	6.64	6.93	8.06	2.01	6.03	4.7
Merged-chr7-142399042-3	chr7	142398946	142399146	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-11176.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.46	9.56	11.41	2.41	10.23	4.08	7.31	5.78	18.49	12.05	11.05	9.71
Merged-chr14-29980670-2	chr14	29980565	29980765	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027493, intron 1 of 12)	intron (NM_027493, intron 1 of 12)	2328.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	7.67	7.29	10.27	2.82	5.73	10.03	6.31	3.5	5.51	15.57	7.54	14.72
Merged-chr5-5266676-2	chr5	5266578	5266778	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310448)	promoter-TSS (NM_001310448)	-610.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.62	5.28	0.0	6.03	5.32	5.33	3.65	8.52	10.42	7.03	12.56	9.4
Merged-chr9-71806655-2	chr9	71806598	71806798	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-35096.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	13.73	4.53	4.56	3.22	2.05	11.6	2.99	4.46	4.52	13.05	6.03	5.33
Merged-chr15-74687408-3	chr15	74687323	74687523	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14853.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	10.09	6.29	6.85	10.86	12.27	1.88	11.29	13.54	9.44	9.54	15.07	10.65
Merged-chr14-25636349-1	chr14	25636249	25636449	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183208, intron 7 of 23)	intron (NM_183208, intron 7 of 23)	32836.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	9.29	10.31	11.41	8.04	6.95	7.53	4.32	2.52	4.52	3.01	2.01	0.0
Merged-chr11-121475823-2	chr11	121475710	121475910	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029878, intron 7 of 38)	intron (NM_029878, intron 7 of 38)	23861.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	8.48	10.56	14.83	5.23	6.95	7.84	6.64	4.49	8.85	6.03	5.53	3.76
Merged-chr11-78600235-2	chr11	78600131	78600331	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49496.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	4.44	4.28	13.12	9.65	6.55	10.35	14.62	10.54	14.95	8.03	11.56	5.64
Merged-chr9-7343309-1	chr9	7343209	7343409	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1088.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	1.62	1.76	5.7	3.22	6.14	0.94	9.63	7.32	3.34	9.04	3.01	6.58
Merged-chr8-122898179-1	chr8	122898079	122898279	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 7 of 12)	intron (NM_001081379, intron 7 of 12)	49805.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	8.08	3.02	2.85	8.85	3.27	9.41	4.98	8.55	6.69	5.52	9.04	5.01
Merged-chr9-123498061-2	chr9	123497960	123498160	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	19359.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.85	2.77	6.28	3.62	7.36	8.78	4.65	11.75	7.28	4.02	13.06	6.89
Merged-chr9-102784645-2	chr9	102784536	102784736	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44988.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	5.25	7.8	1.14	9.25	3.27	8.15	10.3	7.29	6.49	6.03	9.04	4.7
Merged-chr17-26095445-3	chr17	26095346	26095546	+	701.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019731)	promoter-TSS (NM_019731)	24.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	8.88	8.05	2.85	9.25	6.55	15.05	3.99	12.95	10.23	9.04	8.04	5.33
Merged-chr11-26213873-3	chr11	26213777	26213977	+	701.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-3301.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	13.33	7.8	7.99	13.67	13.5	13.8	7.97	7.35	15.54	8.54	10.55	6.89
Merged-chr5-20860773-2	chr5	20860682	20860882	+	701.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	21342.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.04	7.29	7.99	6.44	9.0	4.39	6.98	13.49	7.28	8.54	13.06	9.71
Merged-chr6-120198087-2	chr6	120197992	120198192	+	701.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016718, exon 2 of 4)	exon (NM_016718, exon 2 of 4)	4269.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.46	9.56	11.98	2.41	7.77	6.9	1.33	5.58	7.08	10.04	6.03	3.45
Merged-chr19-32792817-1	chr19	32792717	32792917	+	701.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	35240.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.27	1.51	4.56	2.41	5.32	5.64	6.31	9.95	8.06	2.51	10.05	6.58
Merged-chr13-60177685-1	chr13	60177585	60177785	+	701.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008086)	promoter-TSS (NM_008086)	-150.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.4	4.02	0.0	0.0	5.32	7.21	7.97	7.4	3.54	2.51	3.01	6.27
Merged-chr6-90463129-3	chr6	90463060	90463260	+	701.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355668, intron 1 of 2)	CpG	584.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.44	8.05	6.28	17.7	11.86	9.41	9.97	11.1	8.46	8.54	9.55	6.27
Merged-chr15-65744645-1	chr15	65744545	65744745	+	701.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42375.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	3.23	4.53	8.56	14.48	14.73	8.15	6.64	6.73	6.69	4.02	9.04	6.27
Merged-chr4-9743262-3	chr4	9743131	9743331	+	701.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27354.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	9.69	4.53	10.84	6.84	5.73	8.15	3.32	5.69	12.19	6.03	15.07	9.08
Merged-chr14-30827615-3	chr14	30827508	30827708	+	701.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2014.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	13.73	13.58	9.7	4.42	12.27	20.07	9.97	6.03	14.55	11.05	10.55	5.95
Merged-chr18-46575710-5	chr18	46575481	46575681	+	701.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	2.02	3.02	6.85	0.8	6.55	1.57	7.64	5.07	7.28	7.03	10.05	4.39
Merged-chr7-35580077-2	chr7	35579967	35580167	+	701.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145840, exon 1 of 1)	3' UTR (NM_145840, exon 1 of 1)	5515.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	1.21	8.55	8.56	6.44	8.59	8.15	4.98	7.82	8.06	7.03	5.53	2.82
Merged-chr2-125723785-1	chr2	125723685	125723885	+	701.25	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_199022, exon 1 of 12)	5' UTR (NM_199022, exon 1 of 12)	363.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	5.65	4.02	6.85	1.61	4.91	7.84	3.32	2.33	5.7	3.51	8.54	3.45
Merged-chr11-60776334-3	chr11	60776226	60776426	+	701.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	1039.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	6.06	8.55	6.28	4.83	8.18	8.78	6.98	4.91	15.74	11.05	11.56	8.14
Merged-chr4-12171716-3	chr4	12171557	12171757	+	701.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310743, intron 1 of 7)	CpG	358.0	NM_001310743	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	6.06	5.53	5.7	4.42	6.14	6.27	13.95	8.92	6.1	4.52	6.03	7.83
Merged-chr16-35755923-3	chr16	35755827	35756027	+	701.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13429.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	2.83	4.78	3.42	4.83	2.86	5.64	3.32	3.22	3.54	5.02	8.54	3.13
Merged-chr4-129678105-2	chr4	129678008	129678208	+	701.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356378, intron 9 of 9)	intron (NM_001356378, intron 9 of 9)	-5341.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	8.88	5.03	8.56	7.64	9.0	10.35	10.63	9.79	0.2	0.5	0.5	0.63
Merged-chr10-59326814-2	chr10	59326725	59326925	+	701.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3529.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	7.27	5.03	5.7	8.04	10.64	9.09	5.31	8.41	9.64	12.55	6.53	0.31
Merged-chr9-110530806-2	chr9	110530706	110530906	+	701.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1791.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	6.86	6.29	2.85	8.04	13.09	8.47	7.31	9.36	7.47	2.01	9.55	7.52
Merged-chr1-23419143-2	chr1	23419045	23419245	+	701.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35970.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.85	7.55	10.27	11.66	9.41	6.9	7.97	15.22	6.1	11.55	8.54	4.07
Merged-chr16-29946120-3	chr16	29946019	29946219	+	701.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	33005.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	4.85	11.07	9.13	8.45	5.73	12.54	12.95	9.2	8.06	7.53	6.53	5.01
Merged-chr6-38531430-3	chr6	38531333	38531533	+	701.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3428.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	8.08	15.09	7.99	7.64	10.23	9.09	9.3	8.86	9.05	11.55	22.11	7.52
Merged-chr11-98002822-2	chr11	98002712	98002912	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001282977, exon 14 of 14)	3' UTR (NM_001282977, exon 14 of 14)	-6639.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	4.04	9.06	10.84	5.23	4.91	11.6	5.65	1.12	13.37	18.08	5.02	5.01
Merged-chr18-36493694-1	chr18	36493594	36493794	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22111.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.46	6.79	4.56	1.61	5.73	7.53	3.32	11.92	5.7	4.52	4.02	1.25
Merged-chr1-120251387-1	chr1	120251287	120251487	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	13893.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	4.28	1.71	3.22	1.64	3.14	3.99	6.36	3.54	1.0	4.52	4.07
Merged-chr10-83337440-2	chr10	83337334	83337534	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177388, intron 1 of 10)	CpG	383.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.85	8.05	7.42	5.63	6.95	3.14	12.29	4.93	4.52	4.02	3.01	4.07
Merged-chrX-107336813-1	chrX	107336713	107336913	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	52467.0	NM_001177782	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.0	0.5	1.14	4.02	2.45	6.59	3.32	6.42	1.57	7.03	2.01	3.76
Merged-chr4-107777236-1	chr4	107777136	107777336	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25023.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	2.83	3.52	2.28	3.22	3.27	4.08	8.3	3.67	8.06	1.51	5.53	3.45
Merged-chr5-121451868-2	chr5	121451804	121452004	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029912)	promoter-TSS (NM_029912)	570.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	4.85	5.28	5.13	4.83	11.05	11.29	10.96	6.17	9.83	6.53	6.03	13.78
Merged-chr3-89714536-1	chr3	89714436	89714636	+	701.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	-486.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	7.27	3.77	2.28	2.41	5.73	9.09	1.66	2.97	12.59	3.51	8.04	8.14
Merged-chr18-32370411-1	chr18	32370311	32370511	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-6806.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	4.85	3.77	7.99	1.61	2.86	6.9	3.32	9.76	10.62	6.53	8.54	5.64
Merged-chr16-35919178-1	chr16	35919078	35919278	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19292.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	1.62	3.77	1.14	1.21	1.64	6.27	3.99	4.51	6.1	10.54	4.02	2.19
Merged-chr5-122400275-1	chr5	122400175	122400375	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8397.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	6.46	3.52	7.42	0.0	1.23	6.59	8.3	5.78	6.88	3.51	3.52	10.02
Merged-chr10-39771888-1	chr10	39771788	39771988	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	39728.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	8.48	3.27	5.13	2.41	1.64	3.14	4.98	6.64	7.47	4.02	4.52	11.28
Merged-chr17-45731439-1	chr17	45731339	45731539	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2405.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	3.23	6.54	5.13	1.21	7.77	6.27	2.66	9.59	10.03	5.02	2.51	2.19
Merged-chr2-4402137-1	chr2	4402037	4402237	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	1161.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.25	5.28	14.26	2.41	6.14	4.7	4.32	7.88	11.21	2.51	5.53	3.45
Merged-chr17-35919492-1	chr17	35919392	35919592	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001357740, exon 1 of 19)	5' UTR (NM_001357740, exon 1 of 19)	220.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	2.42	7.8	2.28	6.84	8.18	9.41	4.32	5.07	4.92	7.03	6.03	7.52
Merged-chr18-40459120-1	chr18	40459020	40459220	+	701.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200759.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.75	0.0	0.0	0.0	1.25	0.0	2.3	10.03	6.03	11.05	3.76
Merged-chrX-48034762-1	chrX	48034662	48034862	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013912)	promoter-TSS (NM_013912)	91.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	2.02	1.01	2.28	2.82	2.86	2.51	5.65	2.13	3.15	2.01	3.52	0.94
Merged-chr7-101368494-1	chr7	101368394	101368594	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040111, intron 2 of 33)	L1ME4b|LINE|L1	-9628.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	7.27	4.53	2.85	0.0	6.55	6.9	3.99	3.45	2.36	9.04	5.02	6.27
Merged-chr1-135793890-1	chr1	135793790	135793990	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5531.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	7.27	3.02	1.14	4.02	6.14	8.15	1.99	10.77	4.33	8.03	4.52	2.82
Merged-chr14-52015820-2	chr14	52015674	52015874	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253694, intron 1 of 5)	intron (NM_001253694, intron 1 of 5)	-1091.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	4.85	3.77	9.13	0.8	3.27	3.76	8.64	2.75	6.49	3.51	3.52	3.45
Merged-chr5-140806518-2	chr5	140806409	140806609	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	23922.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.65	8.05	4.56	8.45	13.09	6.9	4.65	12.08	10.42	9.54	9.04	5.01
Merged-chr2-164526072-1	chr2	164525972	164526172	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-24458.0	NR_152178	670507.0	Mm.404686	NR_152178		Gm14317	-	predicted gene 14317	ncRNA	9.29	3.77	6.28	3.62	7.77	15.68	8.64	2.94	2.75	1.0	3.01	1.25
Merged-chr19-10971858-1	chr19	10971758	10971958	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023529, intron 1 of 8)	ORR1C2-int|LTR|ERVL-MaLR	2812.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	7.67	11.82	10.84	8.04	2.05	0.0	0.0	0.17	0.0	0.0	0.0	2.19
Merged-chr6-55415584-1	chr6	55415484	55415684	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18697.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	0.0	0.5	5.13	4.83	1.64	3.45	5.65	6.7	0.98	1.0	0.0	0.31
Merged-chr4-129830416-2	chr4	129830314	129830514	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9706.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.02	5.03	6.85	2.41	4.91	5.33	11.29	4.12	13.18	7.03	19.6	9.71
Merged-chr5-110979533-5	chr5	110979369	110979569	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	CpG	-24675.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	7.67	4.78	10.27	5.23	6.55	3.45	8.64	7.54	3.34	5.52	4.52	8.14
Merged-chr3-57697300-1	chr3	57697200	57697400	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-4763.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	6.06	2.01	3.99	6.84	6.55	1.25	3.65	4.82	8.85	4.02	5.02	1.88
Merged-chr15-59517034-2	chr15	59516936	59517136	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-131618.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.44	3.52	10.27	9.65	3.68	7.84	9.3	8.16	3.93	1.51	4.52	3.45
Merged-chr9-63990082-1	chr9	63989982	63990182	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	31977.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	8.08	3.52	13.12	2.41	13.09	11.29	8.97	4.82	5.7	2.51	8.04	6.89
Merged-chr14-47348847-1	chr14	47348747	47348947	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25013.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.63	3.02	1.14	4.02	5.73	6.27	1.99	8.61	5.31	4.02	9.04	6.27
Merged-chr11-29720857-1	chr11	29720757	29720957	+	701.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	2294.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	1.62	0.25	2.28	0.0	1.64	1.25	0.66	0.9	10.23	2.01	6.03	5.33
Merged-chr13-47152544-2	chr13	47152449	47152649	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3879.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	6.86	4.78	9.13	4.83	7.36	9.41	3.65	8.05	9.64	6.53	16.58	7.83
Merged-chr9-111220761-3	chr9	111220681	111220881	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 11 of 13)	intron (NM_027742, intron 11 of 13)	50827.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	8.08	4.78	9.13	9.25	5.73	2.82	2.99	8.27	14.36	15.57	12.06	9.4
Merged-chr15-28188152-1	chr15	28188052	28188252	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15614.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	7.67	4.02	4.56	4.02	11.86	2.51	8.64	6.81	5.11	3.51	10.55	5.01
Merged-chr8-66914315-1	chr8	66914215	66914415	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	54098.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	2.42	0.0	2.85	0.8	3.68	2.82	4.98	5.58	6.69	5.52	5.02	3.45
Merged-chr17-72858387-2	chr17	72858294	72858494	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20346.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.44	3.77	5.7	10.05	8.18	9.09	6.64	9.9	8.26	3.51	14.57	2.19
Merged-chr4-134927934-1	chr4	134927834	134928034	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_023665)	TTS (NM_023665)	-3046.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	5.65	10.06	5.7	10.46	5.32	3.76	1.66	2.97	6.69	3.51	2.01	7.83
Merged-chr4-41738494-2	chr4	41738401	41738601	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286551)	TTS (NM_001286551)	2858.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	4.44	5.28	2.28	6.84	6.55	10.98	1.0	10.57	10.42	13.56	10.05	6.89
Merged-chr18-52909371-2	chr18	52909271	52909471	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199151, intron 11 of 11)	intron (NM_001199151, intron 11 of 11)	141227.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	4.85	3.52	8.56	0.8	5.32	9.41	6.64	8.8	7.87	17.07	10.05	2.51
Merged-chr4-81745676-1	chr4	81745576	81745776	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258663.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	2.42	3.27	0.0	1.61	5.73	5.96	1.66	5.44	1.97	3.01	2.51	1.57
Merged-chr3-51334196-1	chr3	51334096	51334296	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	6448.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	1.62	3.02	3.42	2.41	3.68	6.27	0.33	8.38	3.54	3.51	5.02	2.82
Merged-chr6-120451666-2	chr6	120451571	120451771	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11526.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.25	8.8	3.42	1.21	6.95	16.31	2.66	3.84	14.55	9.54	15.58	5.64
Merged-chr6-142779536-2	chr6	142779442	142779642	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	22856.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	3.23	3.02	6.28	2.01	2.86	3.76	5.65	7.77	3.74	4.02	10.05	11.28
Merged-chr15-5185598-3	chr15	5185517	5185717	+	700.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026213)	promoter-TSS (NM_026213)	57.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	2.02	6.54	3.99	11.26	4.5	5.96	11.63	7.82	7.08	7.53	11.05	9.08
Merged-chr2-153410394-2	chr2	153410322	153410522	+	700.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001134300, exon 11 of 11)	3' UTR (NM_001134300, exon 11 of 11)	34057.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	9.69	6.54	9.7	8.04	4.91	9.41	2.66	10.77	9.44	5.52	5.53	2.51
Merged-chr9-107566224-3	chr9	107566115	107566315	+	700.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019742)	TTS (NM_019742)	-2948.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	7.27	5.53	12.55	4.42	7.36	10.35	3.32	6.53	13.18	12.55	3.01	9.4
Merged-chr5-138848269-2	chr5	138848152	138848352	+	700.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	4.04	7.8	3.99	4.02	6.95	6.59	2.66	4.63	9.83	5.52	9.55	8.77
Merged-chr15-36903513-2	chr15	36903424	36903624	+	700.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103878.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	7.27	7.8	9.7	12.87	5.73	8.47	12.29	11.16	5.7	6.53	9.04	5.33
Merged-chr13-37249783-2	chr13	37249677	37249877	+	700.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.27	8.05	8.56	14.48	10.23	11.29	15.28	24.42	8.26	1.51	9.55	1.57
Merged-chr1-164061424-3	chr1	164061270	164061470	+	700.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011346)	promoter-TSS (NM_011346)	-706.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	9.69	4.78	6.85	7.64	6.14	6.27	2.99	5.66	5.31	3.51	5.53	4.7
Merged-chr5-137630246-3	chr5	137630111	137630311	+	700.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1088.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	4.44	7.8	10.84	8.04	5.32	7.53	6.64	4.77	14.55	5.52	11.56	6.27
Merged-chr4-133209551-3	chr4	133209457	133209657	+	700.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2979.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	18.17	19.87	11.41	10.05	10.23	14.42	5.31	7.93	9.83	9.54	10.05	5.33
Merged-chr11-88989624-1	chr11	88989524	88989724	+	700.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016706, intron 6 of 6)	intron (NM_016706, intron 6 of 6)	-9779.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.0	0.0	0.0	0.8	0.82	1.57	1.99	0.03	8.65	15.06	17.59	16.6
Merged-chr18-56378088-2	chr18	56377979	56378179	+	700.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22261.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.65	6.04	11.41	8.45	6.55	8.15	8.3	10.82	9.24	6.53	18.59	7.83
Merged-chr2-78048547-1	chr2	78048447	78048647	+	700.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2630.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	10.9	6.29	5.7	6.03	8.59	11.6	5.65	8.47	8.46	6.53	9.04	5.95
Merged-chr7-67369820-2	chr7	67369720	67369920	+	700.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	3038.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	10.9	5.28	10.27	1.61	4.09	21.64	6.31	4.12	16.52	17.07	21.61	3.45
Merged-chrX-99216942-3	chrX	99216837	99217037	+	700.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	80876.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	8.88	5.28	5.7	11.26	12.68	5.96	7.97	13.77	6.29	8.03	10.05	7.52
Merged-chr13-33965241-2	chr13	33965116	33965316	+	700.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163239, intron 1 of 5)	intron (NM_001163239, intron 1 of 5)	557.0	NM_001163241	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	7.67	8.55	5.7	5.63	8.18	2.51	1.33	5.47	5.9	6.03	4.52	5.01
Merged-chr9-85577958-3	chr9	85577837	85578037	+	700.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	171397.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	12.11	8.8	3.42	14.48	11.05	5.64	6.64	6.59	8.85	6.53	6.03	7.21
Merged-chr17-8233957-2	chr17	8233857	8234057	+	700.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2086.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	12.52	9.31	10.84	6.84	11.86	7.53	6.31	6.42	4.72	7.53	7.03	5.64
Merged-chr5-100675111-2	chr5	100674999	100675199	+	700.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027978)	promoter-TSS (NM_027978)	-843.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	7.27	5.79	8.56	4.42	13.09	10.66	5.65	6.36	11.6	12.55	10.05	7.52
Merged-chr19-6908318-3	chr19	6908214	6908414	+	700.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012021, intron 1 of 5)	intron (NM_012021, intron 1 of 5)	-1384.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	7.67	6.79	7.42	4.02	5.73	14.42	4.65	4.85	16.72	5.52	13.57	11.9
Merged-chr10-17485100-1	chr10	17485000	17485200	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-238128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	8.08	4.28	1.14	3.62	6.95	3.76	6.31	8.41	1.77	4.02	7.54	2.82
Merged-chr9-91362223-3	chr9	91362082	91362282	+	700.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009573, intron 2 of 2)	intron (NM_009573, intron 2 of 2)	3617.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	4.85	6.29	9.13	18.9	1.64	5.64	9.3	9.56	5.31	3.01	5.53	2.19
Merged-chr5-44223685-1	chr5	44223585	44223785	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	2921.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	6.46	6.79	5.13	1.61	7.36	4.7	5.65	10.99	3.54	1.0	1.0	0.0
Merged-chr10-44453995-1	chr10	44453895	44454095	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	4753.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.65	1.76	2.85	2.82	7.36	7.53	3.32	5.66	4.72	1.0	5.53	6.89
Merged-chr4-40134926-3	chr4	40134819	40135019	+	700.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8346.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	8.88	5.79	7.99	9.65	6.95	9.09	7.64	4.32	19.67	9.04	10.55	13.78
Merged-chr11-116678312-1	chr11	116678212	116678412	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009180, intron 8 of 8)	intron (NM_009180, intron 8 of 8)	3715.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	6.46	4.53	10.27	3.22	6.55	9.41	5.65	7.04	13.96	2.01	2.51	2.82
Merged-chr11-117842252-1	chr11	117842152	117842352	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-6985.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	6.46	7.29	6.85	6.44	11.45	8.47	8.64	5.78	7.87	8.03	3.01	5.01
Merged-chr14-76503258-1	chr14	76503158	76503358	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310647)	promoter-TSS (NM_001310647)	-968.0	NM_001310647	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.65	4.02	5.7	5.23	9.0	7.21	0.0	8.16	9.64	6.03	4.52	4.7
Merged-chr12-81746640-3	chr12	81746556	81746756	+	700.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	L1MB8|LINE|L1	34514.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	2.42	7.04	14.83	4.42	5.73	5.33	4.32	8.89	4.33	9.04	9.04	8.14
Merged-chr12-80154160-2	chr12	80154041	80154241	+	700.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21297.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	3.63	9.81	3.42	5.23	8.18	10.98	1.33	6.42	13.77	6.03	10.05	5.01
Merged-chr4-11031910-2	chr4	11031806	11032006	+	700.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24287.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	10.09	3.52	1.14	6.03	4.09	8.15	5.98	12.42	8.46	4.52	2.01	8.77
Merged-chr4-145194231-2	chr4	145194125	145194325	+	700.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 1 of 69)	intron (NM_001276465, intron 1 of 69)	780.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.06	6.54	1.14	4.02	9.82	6.27	8.3	11.24	8.46	4.52	9.55	12.53
Merged-chr4-133156620-2	chr4	133156468	133156668	+	700.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	L2|LINE|L2	25935.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.63	2.26	6.28	9.25	4.09	7.21	8.3	9.79	4.52	4.52	17.59	8.14
Merged-chr3-9829259-3	chr3	9829176	9829376	+	700.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	MIRb|SINE|MIR	4403.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	7.67	7.55	5.7	4.83	7.77	7.21	5.31	7.18	11.21	8.54	13.06	5.33
Merged-chr1-174048449-3	chr1	174048336	174048536	+	700.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1939.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	6.46	5.79	15.97	10.46	2.86	12.54	10.63	7.04	11.21	11.55	9.55	4.39
Merged-chr10-81343350-3	chr10	81343226	81343426	+	700.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	-60.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	7.67	12.32	10.84	14.08	8.59	1.88	8.64	3.0	11.41	8.54	11.05	5.64
Merged-chr4-133498588-3	chr4	133498482	133498682	+	700.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081156)	promoter-TSS (NM_001081156)	-32.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	8.08	7.8	13.12	6.84	3.68	4.08	1.66	5.69	13.77	15.57	13.06	6.27
Merged-chr6-37722042-1	chr6	37721942	37722142	+	700.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-148769.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.5	0.57	0.0	0.41	1.25	0.0	0.59	8.06	1.51	6.03	8.77
Merged-chrX-75622088-1	chrX	75621988	75622188	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-43857.0	NM_175122	67790.0	Mm.45148	NM_175122	ENSMUSG00000031202	Rab39b	6330580M05Rik	RAB39B, member RAS oncogene family	protein-coding	0.4	1.01	1.71	2.41	4.91	7.84	2.99	8.61	0.39	0.0	0.0	1.25
Merged-chr6-122577068-1	chr6	122576968	122577168	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_031159)	TTS (NM_031159)	23259.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	1.62	2.26	2.28	0.8	5.73	1.57	6.98	5.24	2.75	0.5	5.02	4.7
Merged-chrX-19162608-2	chrX	19162511	19162711	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15640.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	5.65	7.29	4.56	11.66	15.96	10.35	9.97	7.79	12.98	7.53	11.56	8.46
Merged-chr7-19283086-1	chr7	19282986	19283186	+	700.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013648, intron 1 of 9)	CpG	462.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	8.88	5.53	4.56	2.01	3.27	5.64	2.99	6.53	10.62	6.03	5.02	9.71
Merged-chr12-41186193-1	chr12	41186093	41186293	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	162103.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	3.23	2.52	6.28	7.24	1.64	5.02	8.97	5.66	0.79	7.03	20.1	8.46
Merged-chr7-31084314-1	chr7	31084214	31084414	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	2.42	2.52	0.0	8.85	5.73	2.51	7.31	5.55	2.16	3.51	0.0	1.25
Merged-chr3-87215343-2	chr3	87215224	87215424	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40577.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	1.62	5.79	2.85	6.44	11.45	3.14	4.65	9.67	11.01	5.02	4.02	8.14
Merged-chr6-87534354-1	chr6	87534254	87534454	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1095.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.42	5.03	5.7	0.8	4.5	3.76	1.0	6.08	6.29	2.51	7.54	4.07
Merged-chr3-38130297-1	chr3	38130197	38130397	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77822.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	1.62	6.29	6.85	10.86	3.27	6.59	6.64	9.64	5.51	5.02	13.06	5.01
Merged-chr16-95861518-1	chr16	95861418	95861618	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37195.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	1.62	2.52	10.27	7.64	9.41	7.84	5.65	5.83	6.88	4.52	14.57	5.64
Merged-chr1-131270438-1	chr1	131270338	131270538	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019777, intron 10 of 21)	intron (NM_019777, intron 10 of 21)	9125.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.46	3.77	16.54	0.0	10.64	8.47	0.33	6.08	4.72	6.53	5.02	5.64
Merged-chr11-111064859-2	chr11	111064769	111064969	+	700.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1295.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.86	10.56	2.28	10.05	5.73	6.27	1.33	6.62	5.7	8.54	10.05	4.07
Merged-chr1-30872159-1	chr1	30872059	30872259	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8903.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.81	1.01	0.0	0.4	2.45	1.88	5.31	5.86	7.87	7.03	8.04	5.01
Merged-chr2-165883909-1	chr2	165883809	165884009	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	929.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.42	2.26	0.57	0.0	8.59	3.14	5.65	5.13	8.65	6.53	7.54	4.7
Merged-chrX-71270886-2	chrX	71270785	71270985	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	intron (NM_001358113, intron 6 of 15)	55811.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	4.44	6.04	3.99	3.22	5.73	16.31	9.3	4.15	12.59	7.53	12.56	12.22
Merged-chr17-56159912-3	chr17	56159845	56160045	+	700.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2546.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	7.67	7.8	5.7	6.44	5.73	11.92	4.65	4.51	12.19	12.55	19.6	5.95
Merged-chr17-48301004-3	chr17	48300939	48301139	+	700.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360121, intron 1 of 4)	intron (NM_001360121, intron 1 of 4)	1001.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	4.44	2.26	14.83	8.85	5.73	4.39	4.98	8.94	12.59	4.52	11.05	8.46
Merged-chr4-56865278-3	chr4	56865183	56865383	+	700.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018761)	promoter-TSS (NM_018761)	-72.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	7.27	8.55	5.7	7.24	6.55	6.9	7.97	13.21	11.21	9.54	13.57	9.08
Merged-chrX-109012791-5	chrX	109012628	109012828	+	700.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016710, intron 1 of 5)	intron (NM_016710, intron 1 of 5)	652.0	NM_016710	50887.0	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	4.44	7.8	0.0	4.83	8.59	5.64	8.3	9.03	10.03	9.54	10.55	3.45
Merged-chr13-30767909-3	chr13	30767815	30768015	+	700.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013674)	TTS (NM_013674)	18682.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	8.08	8.05	15.97	10.05	12.27	7.84	13.62	16.93	9.44	10.54	12.56	20.68
Merged-chr14-19807594-2	chr14	19807466	19807666	+	700.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008695, intron 17 of 20)	MLT1F2|LTR|ERVL-MaLR	16257.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	1.21	8.55	10.84	11.66	6.14	1.25	5.98	4.88	3.54	1.51	6.03	4.7
Merged-chr4-99298885-2	chr4	99298803	99299003	+	700.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104756.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.02	4.02	5.13	1.21	3.68	7.84	1.66	3.76	19.08	12.55	22.61	11.28
Merged-chr5-74794332-1	chr5	74794232	74794432	+	700.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-91429.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.21	1.51	0.0	1.21	11.05	6.27	4.65	5.55	0.79	0.0	0.0	1.57
Merged-chr11-86599510-1	chr11	86599410	86599610	+	700.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	(A)n|Simple_repeat|Simple_repeat	-15352.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	6.86	4.78	4.56	4.83	5.73	6.9	1.99	0.9	14.36	12.55	10.05	8.46
Merged-chr15-89171843-3	chr15	89171746	89171946	+	700.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2105.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	10.5	6.79	11.98	12.47	8.59	6.59	8.3	14.16	13.77	8.03	10.55	5.33
Merged-chr4-16080440-2	chr4	16080343	16080543	+	700.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-66555.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	10.09	2.52	7.99	6.03	7.36	7.21	6.98	11.66	9.64	5.02	9.55	6.27
Merged-chr10-42903238-2	chr10	42903121	42903321	+	700.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	42709.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	6.46	6.04	6.85	13.27	6.55	6.9	7.31	7.4	3.15	1.51	10.05	3.45
Merged-chrX-150956796-2	chrX	150956698	150956898	+	700.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60495.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	4.44	5.28	7.42	7.64	9.82	6.9	2.33	8.52	6.49	3.01	12.56	9.71
Merged-chr2-117374013-3	chr2	117373912	117374112	+	700.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31135.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	11.31	15.59	15.4	9.65	4.91	8.15	3.32	6.17	10.23	12.55	11.05	5.95
Merged-chr2-167001117-3	chr2	167001012	167001212	+	700.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-4813.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	7.67	3.27	12.55	7.64	12.68	14.74	5.31	6.67	18.88	9.04	15.58	9.4
Merged-chr7-101584484-2	chr7	101584398	101584598	+	700.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3337.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	7.67	6.54	2.85	2.82	5.32	2.2	3.32	3.22	12.78	12.55	19.6	16.29
Merged-chr11-53788492-2	chr11	53788380	53788580	+	700.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	18007.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	9.29	3.52	15.4	11.66	4.09	2.82	1.99	1.93	6.1	5.02	14.57	12.84
Merged-chr10-120189439-2	chr10	120189339	120189539	+	700.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	12158.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.04	1.51	3.99	3.22	2.86	5.96	2.66	4.54	14.95	6.53	12.56	8.46
Merged-chr6-47396122-2	chr6	47396030	47396230	+	700.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57602.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	5.65	4.53	6.85	4.83	6.55	5.64	5.65	8.41	15.93	14.56	11.05	11.9
Merged-chr7-126703785-2	chr7	126703671	126703871	+	700.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009898, intron 1 of 10)	intron (NM_009898, intron 1 of 10)	449.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	8.88	5.79	0.0	8.45	9.82	8.78	8.97	3.25	8.46	6.03	11.56	3.13
Merged-chr4-88119096-3	chr4	88118938	88119138	+	700.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 1 of 43)	intron (NM_001081184, intron 1 of 43)	-3002.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	6.46	8.05	2.85	4.83	1.64	6.9	10.3	3.64	5.9	3.51	9.04	8.14
Merged-chr1-176832206-3	chr1	176832124	176832324	+	700.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	3909.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	8.48	7.04	12.55	5.23	7.36	7.21	2.66	11.07	11.6	10.04	3.52	6.89
Merged-chr7-17066547-3	chr7	17066441	17066641	+	700.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4114.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	10.5	6.79	6.85	6.84	13.09	3.76	6.31	8.83	10.82	3.01	11.05	5.01
Merged-chr1-136175370-2	chr1	136175262	136175462	+	700.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153829, exon 36 of 36)	non-coding (NR_153829, exon 36 of 36)	37466.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	4.44	4.02	9.13	5.63	6.14	5.96	7.97	8.72	12.59	11.55	12.56	9.71
Merged-chr11-95411707-2	chr11	95411629	95411829	+	700.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2354.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	2.83	7.55	1.71	7.64	4.5	0.0	6.64	3.67	6.69	9.04	5.53	7.83
Merged-chr7-79887139-1	chr7	79887039	79887239	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009682, intron 4 of 5)	L1M7|LINE|L1	33501.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	1.21	3.52	1.71	4.02	5.32	4.39	0.66	2.21	9.24	6.53	13.57	2.51
Merged-chr3-86343629-1	chr3	86343529	86343729	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077687, intron 22 of 50)	Lx7|LINE|L1	118939.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.4	2.26	3.42	6.84	6.55	3.45	4.65	4.88	5.11	4.02	5.02	2.82
Merged-chr3-95666088-2	chr3	95665986	95666186	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7365.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.08	3.77	2.28	9.25	5.32	6.27	1.99	1.04	8.06	13.56	2.51	3.45
Merged-chr18-67194407-1	chr18	67194307	67194507	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 5 of 11)	B3A|SINE|B2	-10952.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	2.02	3.02	3.42	4.02	2.45	7.53	2.66	6.31	0.59	0.0	1.0	0.63
Merged-chr6-89638218-1	chr6	89638118	89638318	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-5770.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	4.44	3.52	5.7	2.82	0.82	8.15	2.99	2.92	7.08	3.01	11.05	4.7
Merged-chr8-110384927-1	chr8	110384827	110385027	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 11 of 86)	B1_Mus1|SINE|Alu	117429.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	2.42	4.02	6.85	3.22	0.82	3.76	1.33	2.05	9.44	1.51	2.51	5.95
Merged-chr15-8712672-1	chr15	8712572	8712772	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1865.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	6.46	17.61	5.7	0.8	4.91	5.33	1.0	1.6	17.51	12.55	12.56	3.76
Merged-chr18-53529003-1	chr18	53528903	53529103	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033281, intron 2 of 6)	intron (NM_001033281, intron 2 of 6)	64457.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	4.04	0.0	3.42	0.0	2.86	3.45	7.64	5.1	5.11	5.02	5.53	3.13
Merged-chr5-101932161-1	chr5	101932061	101932261	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 15 of 66)	B3A|SINE|B2	137760.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.4	1.01	6.85	4.83	3.27	2.82	7.31	5.05	4.72	7.03	2.51	7.83
Merged-chr6-72050826-1	chr6	72050726	72050926	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8298.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	2.42	0.5	0.0	0.0	0.0	3.14	5.98	2.61	0.79	5.52	1.51	3.13
Merged-chr16-31188234-3	chr16	31188134	31188334	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	MER45A|DNA|hAT-Tip100	13004.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	2.02	7.55	8.56	4.83	5.73	8.78	1.66	6.34	11.01	7.03	5.02	8.14
Merged-chr1-177478755-1	chr1	177478655	177478855	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	32934.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	2.02	2.52	2.28	6.44	9.0	3.45	1.33	8.24	4.52	2.51	10.05	2.82
Merged-chr10-128174197-2	chr10	128174092	128174292	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039080, intron 2 of 13)	intron (NM_001039080, intron 2 of 13)	2376.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	6.46	14.34	6.28	2.41	4.09	6.9	5.31	9.22	8.26	8.54	4.02	4.7
Merged-chr14-70160250-1	chr14	70160150	70160350	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-748.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	1.21	5.03	9.13	1.61	6.55	6.59	10.3	5.55	7.08	6.53	8.04	5.95
Merged-chr11-120150013-2	chr11	120149917	120150117	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	1334.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	5.65	7.8	7.42	7.24	4.09	4.39	6.31	7.51	7.67	2.51	10.05	4.7
Merged-chr8-110622047-1	chr8	110621947	110622147	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151675, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	3480.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.81	3.27	9.7	4.83	8.18	4.7	1.99	7.01	3.54	1.51	7.54	7.21
Merged-chr4-127027495-3	chr4	127027426	127027626	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045010, intron 9 of 11)	intron (NR_045010, intron 9 of 11)	6225.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	4.04	8.05	5.13	11.66	9.0	11.29	4.32	5.64	7.08	4.02	8.04	5.01
Merged-chr9-40333789-1	chr9	40333689	40333889	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	317.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	4.85	9.06	15.97	6.44	8.18	5.96	4.32	5.78	8.46	10.04	10.05	3.76
Merged-chr18-36507889-2	chr18	36507787	36507987	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7918.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	10.9	7.55	0.0	0.0	10.23	11.92	1.0	2.21	2.56	2.01	2.01	0.0
Merged-chr14-120277915-1	chr14	120277815	120278015	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2246.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.46	3.52	6.85	2.82	7.36	8.47	2.99	7.6	5.51	6.03	8.04	6.58
Merged-chr10-23194387-1	chr10	23194287	23194487	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	155503.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	1.62	1.26	5.13	1.61	2.05	5.02	3.65	6.2	2.36	1.0	2.51	1.57
Merged-chr11-93886664-1	chr11	93886564	93886764	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001013375)	promoter-TSS (NM_001013375)	445.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	9.69	4.28	13.12	4.42	6.14	8.15	2.66	3.31	4.72	7.03	8.54	10.34
Merged-chr11-59549572-1	chr11	59549472	59549672	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	6886.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	3.63	2.01	0.0	0.8	0.82	5.33	0.66	2.89	8.26	7.03	3.01	3.45
Merged-chr7-88310947-1	chr7	88310847	88311047	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	32862.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.23	0.5	5.7	1.61	9.41	9.72	3.65	5.19	0.39	1.0	3.52	1.25
Merged-chr4-117544863-2	chr4	117544787	117544987	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5437.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	10.09	3.02	6.28	10.46	5.73	1.88	3.99	6.53	6.29	8.54	8.54	4.7
Merged-chr3-104524658-1	chr3	104524558	104524758	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-12740.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	7.27	7.8	9.13	4.83	6.55	3.14	4.98	7.74	4.92	4.02	3.52	2.19
Merged-chr2-129431512-1	chr2	129431412	129431612	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60373.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.04	4.78	3.99	7.24	9.41	4.08	4.98	8.3	13.77	5.52	2.51	2.51
Merged-chrX-152159511-1	chrX	152159411	152159611	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	intron (NM_001114664, intron 1 of 14)	15243.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.81	1.76	3.42	4.02	4.91	0.63	5.98	4.12	0.98	4.52	6.03	1.25
Merged-chr10-117841096-1	chr10	117840996	117841196	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	4878.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.63	5.03	1.71	0.8	6.55	4.7	6.31	4.91	9.83	2.01	5.53	2.51
Merged-chr10-61275917-3	chr10	61275812	61276012	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2474.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	10.9	14.09	6.85	4.02	5.73	6.27	10.63	6.03	7.47	5.02	6.03	6.89
Merged-chr5-21221108-2	chr5	21221007	21221207	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34840.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.67	5.03	6.28	1.21	4.5	11.29	3.99	10.01	5.9	4.52	4.52	2.19
Merged-chr5-44215796-3	chr5	44215688	44215888	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173764, intron 2 of 13)	intron (NM_173764, intron 2 of 13)	10818.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	1.62	7.55	17.11	23.33	3.27	0.63	9.97	8.64	8.85	1.51	12.56	3.45
Merged-chr4-54669243-2	chr4	54669133	54669333	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-278712.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.42	6.29	6.85	9.25	5.32	7.21	2.99	12.36	1.18	0.5	0.0	0.0
Merged-chr5-134101766-2	chr5	134101672	134101872	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2024.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	13.73	6.04	12.55	4.42	10.64	6.9	3.99	4.99	8.06	1.0	10.55	5.33
Merged-chr3-37348595-2	chr3	37348506	37348706	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008006)	promoter-TSS (NM_008006)	-47.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	2.83	6.04	5.13	0.0	7.36	7.21	5.65	6.56	5.51	11.05	5.53	5.64
Merged-chrX-13243012-4	chrX	13243087	13243287	+	699.958313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045429, intron 1 of 2)	intron (NR_045429, intron 1 of 2)	4546.0	NR_045429	72122.0	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	2.83	2.01	1.71	2.41	4.09	1.88	5.31	2.27	5.11	6.03	2.01	4.7
Merged-chr2-3723977-3	chr2	3723916	3724116	+	699.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	10558.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	8.88	14.84	16.54	10.46	14.32	7.21	5.31	12.87	11.8	1.0	5.02	8.46
Merged-chr15-76661274-3	chr15	76661151	76661351	+	699.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358912, exon 3 of 18)	exon (NM_001358912, exon 3 of 18)	670.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	8.88	6.79	10.84	3.22	9.41	10.03	7.31	5.94	9.24	9.04	8.54	5.33
Merged-chr17-47600130-2	chr17	47600014	47600214	+	699.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081636)	TTS (NM_001081636)	6647.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	2.83	1.01	1.14	5.23	10.23	2.51	5.65	8.72	5.9	3.51	7.03	7.52
Merged-chr8-106528217-3	chr8	106528102	106528302	+	699.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007665, intron 2 of 15)	B4|SINE|B4	17350.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	3.23	7.29	6.28	9.65	2.86	14.42	2.99	5.89	8.06	8.03	12.06	7.21
Merged-chr17-43536731-3	chr17	43536631	43536831	+	699.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	6908.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	5.25	8.8	10.84	8.04	16.77	8.47	8.3	12.0	10.62	13.56	8.04	9.08
Merged-chr14-70914563-2	chr14	70914479	70914679	+	699.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 2 of 7)	intron (NM_001302094, intron 2 of 7)	24472.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.23	11.57	13.12	6.84	9.82	10.35	4.32	7.35	5.11	4.02	2.01	0.31
Merged-chr3-83867177-2	chr3	83867076	83867276	+	699.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3A|LTR|ERVK	-25568.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	12.52	6.04	11.98	6.44	11.05	12.54	6.31	4.82	6.69	5.02	8.04	2.19
Merged-chr1-23792947-2	chr1	23792856	23793056	+	699.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	31030.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	4.85	5.79	6.85	6.84	6.14	7.53	6.98	8.97	15.34	7.03	11.56	3.76
Merged-chr6-35028491-2	chr6	35028378	35028578	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164413, intron 10 of 11)	intron (NM_001164413, intron 10 of 11)	-50479.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.63	3.02	6.85	5.63	4.09	7.84	9.3	8.41	8.85	14.06	14.07	11.28
Merged-chr3-93444722-2	chr3	93444618	93444818	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	2388.0	NM_001163098	99681.0	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	5.25	7.8	6.28	12.47	5.32	2.51	5.98	8.07	6.69	1.51	6.53	6.89
Merged-chr16-90386943-2	chr16	90386836	90387036	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	CpG	539.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.25	6.54	6.28	6.44	4.5	7.53	5.31	7.23	5.11	5.52	3.52	6.89
Merged-chr17-28192908-2	chr17	28192803	28193003	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357995, intron 2 of 13)	intron (NM_001357995, intron 2 of 13)	-14875.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	8.08	7.8	10.84	3.62	5.73	8.15	2.66	2.05	15.14	9.04	14.57	5.64
Merged-chr1-191194734-2	chr1	191194683	191194883	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	8.08	5.53	1.14	3.22	6.95	8.15	4.65	3.2	7.47	8.54	4.52	4.07
Merged-chr13-73971265-2	chr13	73971173	73971373	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	7422.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	8.48	4.02	4.56	9.65	15.96	5.33	2.99	11.64	5.11	11.05	4.52	6.58
Merged-chr13-115077540-2	chr13	115077446	115077646	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	12612.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.4	0.75	3.42	2.41	8.18	4.39	16.28	13.63	6.88	8.54	10.05	6.27
Merged-chr4-3746288-2	chr4	3746202	3746402	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 6 of 12)	intron (NM_001111096, intron 6 of 12)	31338.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.4	0.0	0.0	0.0	9.0	9.72	8.64	9.45	11.01	8.54	9.04	4.07
Merged-chr7-97075186-2	chr7	97075105	97075305	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6546.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	1.62	3.52	6.28	2.82	9.0	5.96	5.31	7.32	9.44	6.53	9.55	7.52
Merged-chr18-80260569-3	chr18	80260482	80260682	+	699.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	4276.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	6.86	7.29	14.26	10.46	6.95	3.45	9.63	13.82	8.85	9.04	7.54	4.07
Merged-chr10-128535365-2	chr10	128535272	128535472	+	699.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9513.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	4.04	1.51	9.13	4.02	10.64	15.37	4.98	6.73	16.13	8.03	11.05	10.34
Merged-chr8-45416108-3	chr8	45415991	45416191	+	699.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-5472.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	6.46	10.82	6.85	10.05	9.0	7.53	4.98	4.77	7.28	4.02	8.04	5.64
Merged-chr16-78301883-4	chr16	78301739	78301939	+	699.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276263, exon 1 of 3)	exon (NM_001276263, exon 1 of 3)	168.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	1.62	5.03	0.57	3.22	3.68	3.76	9.97	6.28	7.08	4.52	4.52	4.39
Merged-chr3-123103427-3	chr3	123103352	123103552	+	699.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080451, intron 4 of 4)	intron (NM_080451, intron 4 of 4)	-68465.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	2.42	10.06	6.85	4.42	6.95	10.35	11.29	8.83	10.03	6.53	14.57	5.95
Merged-chr6-143219569-2	chr6	143219462	143219662	+	699.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26326.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	6.06	8.8	5.7	6.84	6.55	8.47	5.65	7.91	13.96	12.05	13.57	7.21
Merged-chr3-137945686-3	chr3	137945605	137945805	+	699.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	27150.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.65	6.79	23.96	8.04	11.05	11.92	2.66	14.61	5.7	11.05	10.05	14.72
Merged-chr2-148878921-2	chr2	148878817	148879017	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3405.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.85	5.28	3.42	4.42	5.32	6.9	2.66	4.93	8.46	5.52	12.56	2.51
Merged-chr14-14619596-1	chr14	14619496	14619696	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-83429.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	2.42	4.02	3.42	6.03	9.82	12.54	5.98	4.77	2.16	4.52	1.51	2.51
Merged-chr17-44419134-1	chr17	44419034	44419234	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	230562.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	1.62	5.28	10.27	5.23	7.77	10.03	12.62	5.58	9.24	5.02	6.53	6.58
Merged-chr17-44456211-2	chr17	44456106	44456306	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	267634.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.23	5.79	6.28	1.21	6.95	12.23	2.33	3.76	13.77	14.06	8.54	7.83
Merged-chr4-154334863-1	chr4	154334763	154334963	+	699.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291026, intron 11 of 16)	intron (NM_001291026, intron 11 of 16)	-34968.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.0	0.5	1.71	0.4	4.09	3.14	2.99	2.21	10.03	10.54	8.54	10.02
Merged-chr1-152043671-1	chr1	152043571	152043771	+	699.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	46649.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.85	5.79	7.99	10.05	7.77	6.27	12.62	6.17	5.7	0.0	1.51	2.19
Merged-chrX-140539058-3	chrX	140538945	140539145	+	699.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_122039)	TTS (NR_122039)	3623.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	4.04	6.29	3.42	12.07	5.73	2.2	1.99	2.97	1.57	1.51	9.55	2.51
Merged-chr13-51908348-3	chr13	51908267	51908467	+	699.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61692.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	9.69	6.04	11.41	17.7	6.95	12.54	7.64	13.6	7.08	8.03	13.57	9.71
Merged-chr12-69297253-1	chr12	69297153	69297353	+	699.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027117, intron 1 of 12)	CpG	572.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	5.25	3.52	9.13	6.44	10.23	8.47	4.65	10.99	13.57	9.04	12.56	6.89
Merged-chr10-112927137-1	chr10	112927037	112927237	+	699.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033474, exon 1 of 1)	3' UTR (NM_001033474, exon 1 of 1)	1889.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	4.44	3.02	3.42	2.41	6.95	6.9	5.98	5.27	6.49	2.01	7.54	3.13
Merged-chr7-118114002-1	chr7	118113902	118114102	+	699.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	2145.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.44	3.02	9.7	3.62	7.36	6.9	3.32	7.51	3.93	3.01	3.01	1.25
Merged-chr10-68013336-2	chr10	68013215	68013415	+	699.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359319, intron 6 of 11)	intron (NM_001359319, intron 6 of 11)	33745.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	2.42	7.04	2.28	6.44	6.95	9.72	4.65	5.97	14.16	10.04	13.06	6.27
Merged-chr6-67168506-2	chr6	67168443	67168643	+	699.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42|LTR|ERVK	-98436.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	6.46	6.54	13.12	4.83	10.64	5.64	8.3	7.96	8.26	10.04	11.05	4.7
Merged-chr19-37851697-2	chr19	37851595	37851795	+	699.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153887.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	8.48	9.31	16.54	14.08	6.55	3.76	4.98	5.38	1.77	0.0	3.01	3.13
Merged-chr3-32401322-3	chr3	32401195	32401395	+	699.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34856.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	10.9	5.03	7.99	7.64	8.18	10.03	6.64	10.07	10.42	8.54	9.04	5.64
Merged-chr6-83838394-2	chr6	83838291	83838491	+	699.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6650.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	2.42	4.02	2.85	2.41	9.82	10.98	5.31	4.35	13.77	9.04	13.06	4.39
Merged-chr7-122940514-3	chr7	122940415	122940615	+	699.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29944.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	8.88	4.28	14.26	10.86	11.86	9.72	2.99	8.89	8.65	8.54	11.05	11.28
Merged-chr9-44232732-3	chr9	44232637	44232837	+	699.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	1309.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.46	7.29	5.7	9.65	4.09	10.35	5.31	6.11	13.77	8.03	9.55	11.59
Merged-chr3-108574156-3	chr3	108574033	108574233	+	699.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025444, intron 2 of 3)	ID_B1|SINE|B4	2434.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	8.48	8.05	14.83	7.24	5.73	7.84	7.97	4.07	6.88	8.54	27.13	9.4
Merged-chr17-73055355-2	chr17	73055249	73055449	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52636.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.04	5.28	14.26	8.85	1.23	2.82	6.64	8.72	4.92	4.52	14.07	8.77
Merged-chr11-61843678-1	chr11	61843578	61843778	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013881, intron 3 of 26)	intron (NM_013881, intron 3 of 26)	11414.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	8.48	2.26	3.42	5.63	4.91	6.9	4.32	9.36	9.24	6.03	6.53	5.01
Merged-chr17-43332548-1	chr17	43332448	43332648	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27883.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.42	1.76	1.71	7.24	4.5	5.02	5.98	6.67	5.11	7.53	12.06	2.51
Merged-chr6-28869343-2	chr6	28869232	28869432	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-37585.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	11.71	9.56	6.85	2.41	1.64	4.7	6.64	4.07	3.93	2.51	8.04	3.76
Merged-chr18-62464704-1	chr18	62464604	62464804	+	699.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008313, exon 7 of 7)	3' UTR (NM_008313, exon 7 of 7)	79148.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	1.62	0.75	2.28	0.0	2.86	4.39	2.99	0.67	10.23	11.05	10.05	2.82
Merged-chr6-83159633-3	chr6	83159512	83159712	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027948, intron 1 of 3)	B2_Mm2|SINE|B2	3208.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	6.46	11.32	1.14	6.44	7.77	8.78	3.99	3.17	11.01	4.52	3.01	13.16
Merged-chr7-102496825-1	chr7	102496725	102496925	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-2052.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	2.42	1.26	1.14	8.45	8.18	5.64	6.31	8.21	2.95	3.01	10.55	5.33
Merged-chr12-86836125-1	chr12	86836025	86836225	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48689.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	3.63	4.28	4.56	5.23	5.73	5.96	2.33	7.65	6.29	7.03	13.06	6.27
Merged-chr5-5415587-2	chr5	5415480	5415680	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35329.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.88	3.27	2.85	8.45	3.27	3.45	4.32	5.38	11.6	8.54	18.09	5.95
Merged-chr10-19978983-3	chr10	19978889	19979089	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	RLTR11B|LTR|ERVK	44463.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	8.88	5.79	15.97	10.46	13.91	4.08	13.29	7.4	10.42	15.57	7.54	7.21
Merged-chr3-66978906-1	chr3	66978806	66979006	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302358)	promoter-TSS (NM_001302358)	-95.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	4.04	3.27	6.85	5.23	4.09	6.27	4.65	9.56	5.7	1.51	4.02	3.13
Merged-chr6-54021377-2	chr6	54021290	54021490	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18542.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.02	2.01	4.56	4.83	1.64	8.15	3.32	5.19	9.64	8.03	14.07	12.84
Merged-chr10-19121747-1	chr10	19121647	19121847	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20002.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	7.27	5.03	10.27	5.63	4.5	8.78	5.31	6.73	0.2	0.0	0.0	0.0
Merged-chr13-101119738-1	chr13	101119638	101119838	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112389.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0.0	1.01	1.14	4.02	6.55	6.9	4.32	8.3	5.11	4.52	2.51	2.82
Merged-chr19-47169208-3	chr19	47169069	47169269	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-9651.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	7.27	6.04	4.56	7.24	6.95	17.25	6.31	3.62	13.37	11.05	4.02	7.52
Merged-chr14-75175231-5	chr14	75175132	75175332	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	38807.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.85	9.06	6.28	6.84	12.68	8.15	2.66	6.06	8.46	6.53	5.02	7.21
Merged-chr1-154103134-2	chr1	154103021	154103221	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98066.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	8.48	6.79	6.28	0.8	18.41	6.9	3.99	7.15	3.54	6.53	2.51	2.19
Merged-chr10-61336375-2	chr10	61336277	61336477	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	38541.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	7.27	8.8	18.25	4.42	9.41	7.84	2.99	3.31	6.1	6.53	4.52	6.89
Merged-chr3-153902995-3	chr3	153902897	153903097	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1894.0	NM_001282054	55993.0	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	8.88	5.28	12.55	10.46	3.27	9.09	9.97	2.89	11.6	14.06	9.55	3.13
Merged-chr10-79669863-2	chr10	79669762	79669962	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148934, intron 1 of 1)	CpG	452.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	11.31	4.78	7.99	7.64	6.55	7.21	3.32	3.67	12.59	9.54	7.03	16.29
Merged-chr8-107436678-1	chr8	107436578	107436778	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	280.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	5.65	9.56	6.85	4.83	11.86	7.53	17.27	7.29	7.67	11.05	17.08	6.27
Merged-chr18-61477669-2	chr18	61477580	61477780	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	6927.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	3.63	7.55	3.42	3.22	5.32	8.47	3.32	8.72	8.46	8.03	4.52	8.46
Merged-chr17-35222417-3	chr17	35222344	35222544	+	699.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-12566.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	10.09	8.3	9.7	2.01	9.82	8.15	5.98	5.13	14.55	12.05	15.07	3.45
Merged-chr13-30003329-3	chr13	30003240	30003440	+	699.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17277.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	4.85	9.56	7.42	8.45	8.59	12.23	8.64	15.53	10.62	8.03	13.57	8.46
Merged-chr15-31366113-3	chr15	31366080	31366280	+	699.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	1579.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.04	3.27	4.56	2.82	2.45	7.53	7.97	12.17	6.29	4.02	5.53	7.83
Merged-chr8-26960340-2	chr8	26960218	26960418	+	699.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17018.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	3.23	2.01	3.99	7.24	4.91	10.66	6.64	8.5	8.46	3.51	9.04	5.33
Merged-chr13-55464431-2	chr13	55464302	55464502	+	699.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001030296, exon 1 of 3)	5' UTR (NM_001030296, exon 1 of 3)	135.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	4.44	1.76	8.56	3.22	2.45	3.76	3.32	2.69	5.7	5.02	4.52	10.34
Merged-chr4-150862892-2	chr4	150862788	150862988	+	699.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	7818.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	4.85	2.01	17.11	6.03	7.36	13.17	4.65	7.51	11.21	6.03	4.52	5.01
Merged-chr2-91929583-3	chr2	91929478	91929678	+	699.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291483)	TTS (NM_001291483)	2124.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	9.69	9.06	1.14	3.62	4.5	16.31	3.32	7.37	7.67	8.54	1.0	2.82
Merged-chr13-95799569-3	chr13	95799485	95799685	+	699.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92337.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	10.5	6.29	13.12	11.66	18.41	10.03	10.3	12.48	2.16	11.05	11.05	1.25
Merged-chrX-12160502-3	chrX	12160412	12160612	+	699.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168321)	promoter-TSS (NM_001168321)	-157.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	6.06	10.31	9.7	6.84	9.41	24.77	7.64	5.69	15.93	11.55	12.56	7.52
Merged-chr8-71370842-1	chr8	71370742	71370942	+	699.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029865)	promoter-TSS (NM_029865)	-456.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	4.04	3.52	7.99	7.24	6.95	5.33	1.33	1.93	11.8	13.05	11.56	8.77
Merged-chr13-41615629-1	chr13	41615529	41615729	+	699.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	9413.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.23	1.76	3.42	1.61	11.05	3.45	12.95	8.83	9.24	1.51	6.53	1.88
Merged-chr2-155135706-1	chr2	155135606	155135806	+	699.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	2225.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	8.08	3.02	1.71	7.64	8.18	5.02	4.65	7.49	7.28	3.01	8.54	5.95
Merged-chr13-94709892-2	chr13	94709786	94709986	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79057.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	2.02	6.04	6.85	14.48	16.36	6.59	9.97	5.52	6.29	5.02	3.01	2.19
Merged-chr6-17647503-3	chr6	17647405	17647605	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	L1MD1|LINE|L1	10495.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	10.5	7.8	9.7	4.42	2.45	6.27	3.65	12.9	23.8	9.04	16.08	9.08
Merged-chr1-177623620-2	chr1	177623517	177623717	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19326.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	6.06	2.52	3.99	11.26	9.82	4.39	12.29	4.79	10.62	3.51	10.05	7.83
Merged-chr5-124532724-2	chr5	124532607	124532807	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	8.08	8.3	5.7	6.84	8.18	3.76	6.31	7.6	5.51	6.03	6.03	5.01
Merged-chr19-12735198-2	chr19	12735093	12735293	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30439.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	6.06	2.01	9.13	11.26	8.59	7.84	14.62	11.19	7.08	7.03	10.55	5.95
Merged-chr1-143738929-2	chr1	143738827	143739027	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-422.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	7.27	5.03	5.7	6.84	6.95	9.41	10.3	7.79	9.05	8.03	6.03	5.95
Merged-chr17-71207381-2	chr17	71207251	71207451	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164885, intron 1 of 19)	PB1D10|SINE|Alu	2697.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.21	4.78	2.85	4.02	2.86	5.02	1.99	6.2	10.23	11.05	12.56	8.46
Merged-chr10-66928797-2	chr10	66928694	66928894	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8410.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	5.25	7.8	5.13	8.04	11.05	5.64	4.32	10.96	4.72	9.04	9.55	9.71
Merged-chr11-21179252-2	chr11	21179148	21179348	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	-59784.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.85	2.01	3.42	4.42	6.55	1.57	6.98	9.84	9.83	5.02	10.55	2.82
Merged-chr17-45579054-2	chr17	45578942	45579142	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5781.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	7.67	6.29	10.27	6.03	9.0	9.72	1.99	3.08	11.41	16.07	18.59	10.34
Merged-chr17-15380792-2	chr17	15380725	15380925	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-5002.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	5.65	8.55	2.28	3.62	4.91	7.53	7.64	6.08	4.13	5.02	7.54	2.51
Merged-chr15-64047181-2	chr15	64047095	64047295	+	699.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	12569.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.23	7.29	11.41	6.84	9.41	4.08	6.64	8.69	4.72	3.51	4.52	5.01
Merged-chr15-64256748-2	chr15	64256643	64256843	+	699.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	55930.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	9.29	6.29	7.99	9.25	6.14	5.33	6.64	11.69	6.49	14.56	11.56	5.64
Merged-chr10-93166081-3	chr10	93166108	93166308	+	699.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	3423.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	3.23	4.02	2.28	2.41	6.14	7.21	1.99	2.1	2.75	2.01	1.51	3.45
Merged-chr2-131423155-4	chr2	131423041	131423241	+	699.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68721.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	8.48	6.29	10.27	3.62	4.5	13.8	9.63	2.66	5.7	13.05	4.02	5.95
Merged-chr10-82913925-3	chr10	82913828	82914028	+	699.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	47302.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	8.48	2.01	10.84	21.72	16.77	18.81	5.98	15.62	7.87	5.02	9.04	8.46
Merged-chr7-128724937-3	chr7	128724821	128725021	+	699.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 2 of 15)	intron (NM_145955, intron 2 of 15)	15508.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	16.15	16.35	11.98	13.67	12.27	9.41	7.64	5.07	7.28	8.54	6.53	9.4
Merged-chr6-34955685-3	chr6	34955579	34955779	+	699.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025573, intron 5 of 7)	intron (NM_001025573, intron 5 of 7)	22320.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	6.06	5.79	15.4	1.61	5.32	10.35	10.3	8.21	9.05	15.57	11.05	8.77
Merged-chr11-62789425-1	chr11	62789325	62789525	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138949)	promoter-TSS (NM_138949)	-8.0	NM_138949	192651.0	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	4.85	5.53	2.28	3.22	10.64	7.84	7.64	6.59	5.7	9.04	4.52	4.7
Merged-chr11-35708629-1	chr11	35708529	35708729	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011412)	TTS (NM_011412)	-60866.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.0	0.25	4.56	0.0	0.82	0.0	1.33	0.36	10.82	4.02	14.57	9.08
Merged-chr3-105796893-1	chr3	105796793	105796993	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	4488.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.04	1.01	4.56	3.62	4.91	5.33	1.99	5.38	8.85	4.52	5.53	2.19
Merged-chr10-70261160-1	chr10	70261060	70261260	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	15884.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	2.02	0.0	4.56	2.82	5.32	7.53	5.65	7.96	0.39	2.01	3.52	1.88
Merged-chr6-146855219-1	chr6	146855119	146855319	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027059, intron 2 of 9)	MTE2b|LTR|ERVL-MaLR	5109.0	NM_027059	69371.0	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	2.83	0.5	0.0	4.02	1.64	5.64	0.66	6.22	0.39	0.5	1.0	0.31
Merged-chr17-87954831-1	chr17	87954731	87954931	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-20219.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	2.02	3.52	4.56	8.45	13.5	11.92	4.98	5.44	4.92	0.0	7.54	10.02
Merged-chr2-148046257-2	chr2	148046122	148046322	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291067)	promoter-TSS (NM_001291067)	-274.0	NM_001291065	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.83	3.77	3.99	11.66	2.05	4.08	1.0	2.44	7.28	6.03	8.04	10.34
Merged-chr1-43934749-1	chr1	43934649	43934849	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	755.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.65	3.77	5.13	5.23	9.0	11.6	5.98	4.91	12.0	16.07	2.51	5.01
Merged-chr11-22873550-2	chr11	22873398	22873598	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13162.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	1.21	1.76	2.85	6.03	3.68	3.45	4.98	2.36	0.59	0.0	3.01	3.45
Merged-chr2-75732139-1	chr2	75732039	75732239	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27476.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.85	6.79	1.14	6.44	7.77	6.27	1.99	4.43	5.7	2.01	2.01	6.89
Merged-chr1-16162715-1	chr1	16162615	16162815	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	56833.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.02	2.52	1.14	2.01	1.64	6.9	1.0	5.66	8.85	7.03	2.51	3.13
Merged-chr5-132430200-1	chr5	132430100	132430300	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	112143.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	2.02	0.0	3.42	0.4	2.86	1.88	5.31	4.49	0.59	0.5	0.0	0.0
Merged-chr12-40485463-1	chr12	40485363	40485563	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	39410.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.65	1.76	2.28	12.47	5.32	6.27	3.99	5.55	6.1	3.01	3.52	2.51
Merged-chr16-34920269-1	chr16	34920169	34920369	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_139300, intron 14 of 31)	intron (NM_139300, intron 14 of 31)	19060.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	12.11	10.31	6.85	3.22	3.27	0.94	1.66	3.34	1.97	6.03	0.5	2.82
Merged-chr11-106627926-3	chr11	106627835	106628035	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15005.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	10.5	5.79	5.13	4.02	3.27	10.35	2.99	6.34	12.19	8.54	10.05	8.77
Merged-chr4-16044894-1	chr4	16044794	16044994	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-31006.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.4	2.52	0.0	1.21	1.64	2.2	4.65	7.09	5.7	1.0	5.53	3.76
Merged-chr12-4164985-1	chr12	4164885	4165085	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	30832.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.81	0.5	7.42	3.22	5.32	0.63	4.98	6.25	0.39	0.5	6.03	0.94
Merged-chr9-35558450-1	chr9	35558350	35558550	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013932)	promoter-TSS (NM_013932)	20.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	3.63	2.26	1.14	3.22	4.5	3.14	3.32	7.43	3.34	1.0	2.51	4.07
Merged-chr9-61703274-2	chr9	61703174	61703374	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211236.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	6.86	9.81	5.7	1.21	9.0	13.48	5.98	2.72	11.6	12.55	7.03	3.45
Merged-chr18-82767245-2	chr18	82767150	82767350	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8211.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	6.06	2.01	2.85	3.62	9.0	10.66	3.32	6.11	8.06	13.05	9.04	9.08
Merged-chrX-170673457-1	chrX	170673357	170673557	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308488, intron 1 of 7)	intron (NM_001308488, intron 1 of 7)	813.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	0.81	2.77	0.0	0.4	4.09	1.88	3.32	7.26	2.75	3.01	2.01	8.46
Merged-chr18-60710117-1	chr18	60710017	60710217	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	17449.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.81	1.01	1.14	2.41	2.05	3.76	5.98	6.22	3.93	1.51	2.01	1.25
Merged-chr5-64396374-1	chr5	64396274	64396474	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	71568.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.46	2.52	1.14	0.8	9.0	7.21	5.65	6.11	3.93	0.0	3.52	0.94
Merged-chr13-109294601-1	chr13	109294501	109294701	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-30143.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	3.63	0.25	8.56	6.44	5.32	3.76	2.66	9.34	17.9	6.03	9.04	5.95
Merged-chr13-69528651-1	chr13	69528551	69528751	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	5213.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.04	3.52	3.42	3.22	4.09	6.27	3.65	7.21	2.95	4.52	4.02	0.94
Merged-chr15-25843716-1	chr15	25843616	25843816	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	418.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.83	5.79	9.13	4.42	6.55	10.03	6.31	15.31	10.62	3.01	4.02	2.51
Merged-chr8-103919516-1	chr8	103919416	103919616	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182109.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.63	2.52	2.28	0.8	5.73	7.53	9.63	7.15	9.83	4.02	4.52	1.57
Merged-chr18-62033194-2	chr18	62033092	62033292	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31D_MM|LTR|ERVK	80117.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	11.31	0.75	1.14	2.82	12.68	10.35	6.64	10.37	6.29	8.03	10.05	2.19
Merged-chr1-5020021-1	chr1	5019921	5020121	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021374)	promoter-TSS (NM_021374)	-482.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	1.21	2.01	2.28	2.41	4.91	6.27	1.99	6.11	2.56	2.51	4.02	3.45
Merged-chr18-20699459-2	chr18	20699374	20699574	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-34214.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	7.67	3.52	13.12	5.63	11.45	8.47	7.64	12.14	6.29	3.51	8.04	2.19
Merged-chr6-72162747-1	chr6	72162647	72162847	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39550.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	16.15	12.32	5.13	9.65	15.55	8.78	7.97	13.07	8.85	11.55	16.58	6.58
Merged-chr4-132768690-1	chr4	132768590	132768790	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011284, exon 2 of 9)	exon (NM_011284, exon 2 of 9)	330.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	10.09	9.31	6.28	4.42	9.82	4.7	10.96	2.72	6.1	6.03	5.53	5.64
Merged-chr4-66768937-1	chr4	66768837	66769037	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58614.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	10.09	7.29	6.85	6.44	5.73	4.39	3.65	13.18	8.46	10.04	14.57	6.58
Merged-chr9-66916637-2	chr9	66916527	66916727	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	3078.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.86	9.31	6.85	0.0	9.41	10.66	2.66	3.11	12.98	8.03	6.03	3.76
Merged-chr7-144938244-3	chr7	144938136	144938336	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	1689.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.08	7.04	13.12	1.21	10.64	2.51	2.33	4.57	10.42	5.52	13.06	5.64
Merged-chr2-150875579-1	chr2	150875479	150875679	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	RLTR25B|LTR|ERVK	29152.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.02	3.52	3.42	7.64	7.36	2.2	3.65	5.61	3.54	1.0	4.02	0.63
Merged-chr8-47917230-1	chr8	47917130	47917330	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	73321.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.81	2.26	3.42	5.23	6.14	6.59	7.31	6.76	0.39	1.0	3.01	3.13
Merged-chr13-45378893-1	chr13	45378793	45378993	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10849.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.81	2.01	4.56	12.87	4.09	6.9	1.99	4.65	1.38	3.51	0.5	0.94
Merged-chr16-24655338-1	chr16	24655238	24655438	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-66517.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.23	3.02	2.28	4.83	4.09	5.96	0.33	7.18	5.31	6.03	2.51	3.76
Merged-chr6-82777083-3	chr6	82776968	82777168	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2614.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.42	9.56	9.7	4.42	9.82	6.27	5.98	5.47	11.01	7.53	4.02	8.77
Merged-chr11-46775399-1	chr11	46775299	46775499	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	24231.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	2.83	1.01	4.56	1.61	4.91	5.96	1.0	4.43	3.93	5.52	3.01	3.76
Merged-chr2-142700940-1	chr2	142700840	142701040	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	200524.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	1.62	2.26	10.27	3.22	3.27	2.51	1.66	6.03	8.85	7.53	17.08	8.77
Merged-chr2-150897236-3	chr2	150897142	150897342	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	B1_Mur4|SINE|Alu	7489.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.23	5.03	10.84	9.65	6.55	1.25	14.28	11.33	4.33	3.01	10.05	11.28
Merged-chr2-73037441-1	chr2	73037341	73037541	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56995.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	2.02	2.52	3.42	4.83	9.41	5.02	6.98	3.42	5.51	4.52	14.07	15.66
Merged-chr9-25484014-1	chr9	25483914	25484114	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	2417.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.4	0.5	2.28	2.41	3.68	3.76	7.31	6.11	2.56	5.52	2.01	6.58
Merged-chr19-34473259-1	chr19	34473159	34473359	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009890)	TTS (NM_009890)	1876.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.44	5.53	5.13	2.01	2.05	3.76	4.98	6.5	7.47	3.51	2.51	1.57
Merged-chr16-35462373-1	chr16	35462273	35462473	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028295, intron 3 of 16)	intron (NM_028295, intron 3 of 16)	28500.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	3.23	8.3	10.27	2.01	1.23	1.25	1.99	2.13	0.98	4.52	4.02	0.94
Merged-chr6-89281690-3	chr6	89281555	89281755	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4070.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	8.88	3.52	9.13	6.84	6.14	11.29	6.31	10.09	5.31	9.54	6.53	10.02
Merged-chr5-35362028-1	chr5	35361928	35362128	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046060, exon 1 of 4)	non-coding (NR_046060, exon 1 of 4)	475.0	NR_046060	74429.0	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	8.88	2.52	0.57	4.02	0.0	1.57	1.99	4.77	10.42	4.52	7.03	12.22
Merged-chr4-129854148-1	chr4	129854048	129854248	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	33440.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	11.71	7.55	7.42	0.8	4.5	5.33	0.66	3.34	4.33	4.52	2.51	5.33
Merged-chr13-105198193-1	chr13	105198093	105198293	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	Lx2|LINE|L1	94821.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	12.11	4.53	11.41	12.47	0.0	0.0	0.0	0.03	6.1	4.52	17.08	5.95
Merged-chr14-48130983-1	chr14	48130883	48131083	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10114.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.0	1.51	0.57	1.61	7.77	5.02	5.98	5.36	0.79	0.0	2.51	1.88
Merged-chr5-31699610-1	chr5	31699510	31699710	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1560.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.81	3.02	5.7	1.21	5.73	0.63	3.99	5.27	6.49	1.51	2.01	3.13
Merged-chr3-146583678-1	chr3	146583578	146583778	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-13471.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	6.86	4.28	6.28	7.24	10.23	5.96	8.64	4.99	5.7	7.53	11.56	6.27
Merged-chr4-126321133-1	chr4	126321033	126321233	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011902)	TTS (NM_011902)	570.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	5.65	9.06	13.12	6.84	10.64	17.87	11.29	8.64	10.23	11.55	11.56	8.46
Merged-chr2-93334027-1	chr2	93333927	93334127	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183180, intron 1 of 9)	CpG	460.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.81	8.8	3.99	6.84	2.45	6.59	13.62	5.07	3.15	7.03	3.01	2.82
Merged-chr1-55237904-2	chr1	55237888	55238088	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175439, exon 1 of 1)	exon (NM_175439, exon 1 of 1)	811.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.85	5.53	2.85	2.01	6.55	11.29	2.99	4.79	2.95	3.51	6.03	5.01
Merged-chr5-8051526-1	chr5	8051426	8051626	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025618, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	-5016.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.4	1.76	3.99	2.82	1.64	10.98	2.33	3.87	5.7	7.53	7.03	11.28
Merged-chr1-165187531-3	chr1	165187424	165187624	+	698.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151712, intron 3 of 8)	intron (NR_151712, intron 3 of 8)	6909.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	2.42	5.53	6.85	3.62	4.91	3.76	3.65	3.08	7.08	12.05	13.06	3.45
Merged-chr1-53791769-3	chr1	53791668	53791868	+	698.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6553.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	2.42	3.52	7.99	7.24	9.82	14.42	6.31	4.88	8.85	5.02	4.02	4.7
Merged-chr13-116712448-2	chr13	116712360	116712560	+	698.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125718.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	4.44	5.79	9.7	6.44	4.5	11.29	5.31	10.29	11.6	11.05	11.56	10.34
Merged-chr13-107928038-2	chr13	107927931	107928131	+	698.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37967.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	12.11	8.55	5.13	9.65	14.32	13.17	7.97	10.26	7.47	1.51	8.04	3.13
Merged-chr11-69129897-2	chr11	69129810	69130010	+	698.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011786, intron 4 of 14)	intron (NM_011786, intron 4 of 14)	3533.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	10.9	9.81	11.41	7.64	2.45	0.0	0.0	1.63	22.62	9.54	25.63	8.14
Merged-chr6-8663115-2	chr6	8663005	8663205	+	698.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252266, intron 7 of 11)	intron (NM_001252266, intron 7 of 11)	95353.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	2.83	5.79	11.41	8.04	4.91	10.03	7.64	11.94	4.13	9.04	5.02	2.82
Merged-chr8-105715223-3	chr8	105715124	105715324	+	698.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027469)	TTS (NM_027469)	6935.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	9.29	5.79	4.56	14.48	6.55	6.9	3.65	12.17	11.6	9.04	7.54	9.71
Merged-chr10-116513467-3	chr10	116513399	116513599	+	698.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	14450.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	8.88	4.28	5.7	6.03	8.18	6.9	2.99	12.87	14.16	10.54	11.56	4.07
Merged-chr5-105526756-2	chr5	105526652	105526852	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	7281.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	17.77	3.27	9.7	7.24	11.45	15.37	8.64	7.93	0.79	1.51	1.51	0.31
Merged-chr13-113693596-2	chr13	113693513	113693713	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29937.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	9.29	4.78	7.42	8.85	6.14	5.02	4.98	7.57	7.08	5.52	16.08	4.39
Merged-chr7-101061294-2	chr7	101061227	101061427	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47448.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	14.13	7.29	7.42	8.45	11.05	9.09	9.97	6.25	5.31	5.52	3.01	7.21
Merged-chr4-74311328-2	chr4	74311236	74311436	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	59457.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	10.09	2.26	9.13	7.64	3.68	7.84	5.65	8.38	9.24	5.02	22.61	3.45
Merged-chr3-41390041-2	chr3	41389922	41390122	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103177.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.46	2.26	5.7	10.05	6.55	9.09	1.99	10.6	1.18	1.51	2.01	5.95
Merged-chr1-165198180-3	chr1	165198011	165198211	+	698.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3673.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.81	2.52	3.42	5.63	2.86	4.08	6.98	1.99	4.52	3.01	3.52	0.94
Merged-chrX-159650238-3	chrX	159650130	159650330	+	698.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	22958.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.25	7.04	5.7	4.83	14.73	8.15	13.62	11.47	8.85	5.02	7.03	6.89
Merged-chr19-21174214-2	chr19	21174104	21174304	+	698.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69494.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.42	3.52	5.7	3.62	10.23	6.27	8.64	8.41	7.28	12.55	12.56	7.52
Merged-chrX-12077497-3	chrX	12077346	12077546	+	698.674622	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	3107.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	7.27	7.8	4.56	0.8	10.64	13.48	7.31	6.67	9.24	6.53	5.53	7.83
Merged-chr13-60178626-3	chr13	60178545	60178745	+	698.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1110.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	6.46	5.79	3.99	6.44	5.32	7.84	1.33	9.42	11.21	10.54	8.54	10.02
Merged-chr6-128854233-3	chr6	128854142	128854342	+	698.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-27927.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.83	6.29	3.42	6.84	5.73	7.21	4.65	5.64	9.24	12.55	12.56	5.01
Merged-chr11-40857674-2	chr11	40857550	40857750	+	698.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-102364.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	4.04	4.28	3.99	8.04	8.59	9.09	6.31	10.91	12.0	5.52	15.07	5.64
Merged-chr6-115989252-2	chr6	115989137	115989337	+	698.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	5768.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	12.11	6.29	3.42	0.4	2.45	15.68	2.33	2.07	13.18	11.55	15.58	5.01
Merged-chr2-153081373-2	chr2	153081265	153081465	+	698.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145536, exon 9 of 9)	3' UTR (NM_145536, exon 9 of 9)	15410.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	12.11	4.53	7.99	8.04	6.14	9.41	3.99	6.25	12.39	6.03	10.05	6.89
Merged-chr3-105000846-3	chr3	105000742	105000942	+	698.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39133.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	6.46	8.55	7.99	11.26	13.91	8.78	8.64	12.39	11.01	11.55	10.55	5.64
Merged-chr18-65687234-3	chr18	65687080	65687280	+	698.565063	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207255, exon 6 of 6)	exon (NM_207255, exon 6 of 6)	-11088.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.63	9.31	12.55	3.62	4.91	6.9	8.97	7.35	7.28	4.02	5.02	5.33
Merged-chr16-55519846-3	chr16	55519736	55519936	+	698.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25105.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	11.71	3.77	6.85	7.64	11.05	17.25	5.31	14.41	9.64	9.54	24.62	9.08
Merged-chr3-52262638-3	chr3	52262534	52262734	+	698.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5703.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	7.67	4.78	7.99	10.05	8.18	12.54	5.98	9.39	12.78	15.57	15.07	5.95
Merged-chr7-46993270-3	chr7	46993142	46993342	+	698.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175318, exon 6 of 6)	3' UTR (NM_175318, exon 6 of 6)	15172.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	6.46	8.05	12.55	19.31	7.36	8.15	15.28	21.79	6.88	11.55	13.06	5.64
Merged-chr19-26607947-1	chr19	26607847	26608047	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	intron (NM_011416, intron 1 of 32)	2787.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.44	5.28	9.7	13.27	4.91	6.59	7.64	5.36	3.93	7.03	11.56	5.64
Merged-chr10-80831340-2	chr10	80831225	80831425	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	2528.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	15.75	6.04	2.28	1.61	4.09	5.64	3.99	3.62	10.23	8.03	10.05	2.82
Merged-chr2-158305920-1	chr2	158305820	158306020	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-573.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	8.08	7.55	3.42	3.22	6.55	5.02	3.65	6.81	6.88	8.54	9.04	4.07
Merged-chr2-65342262-2	chr2	65342169	65342369	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177074, intron 7 of 11)	intron (NM_177074, intron 7 of 11)	21757.0	NM_177074	320106.0	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	6.06	6.04	8.56	12.47	9.41	5.64	4.98	9.64	4.52	0.5	16.08	2.19
Merged-chr17-67348689-3	chr17	67348576	67348776	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MER5A|DNA|hAT-Charlie	5783.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.25	9.06	3.42	5.63	5.32	8.15	4.98	4.01	9.64	5.02	4.52	3.45
Merged-chr9-55392491-2	chr9	55392395	55392595	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	65582.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	12.52	9.06	6.85	8.04	7.77	5.33	1.99	6.56	9.64	6.03	12.06	5.64
Merged-chr15-103455118-1	chr15	103455018	103455218	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 2 of 30)	intron (NM_153505, intron 2 of 30)	1293.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	3.63	5.28	7.99	3.22	5.73	7.21	2.99	6.53	2.36	0.5	2.01	1.88
Merged-chr3-31091335-1	chr3	31091235	31091435	+	698.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3723.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.85	3.52	10.27	6.03	3.68	7.84	2.33	4.23	12.78	7.53	6.03	8.14
Merged-chr12-28713384-1	chr12	28713284	28713484	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161410, intron 5 of 11)	intron (NM_001161410, intron 5 of 11)	34059.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	5.65	3.77	3.99	3.62	6.95	8.15	6.64	5.41	0.0	2.01	0.5	0.94
Merged-chr17-63871150-2	chr17	63871041	63871241	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-6925.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.85	2.01	11.98	8.45	1.23	1.25	7.31	6.64	7.67	8.03	3.01	4.7
Merged-chrX-56404779-3	chrX	56404687	56404887	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30270.0	NM_183030	320237.0	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	protein-coding	9.29	5.28	5.13	8.04	3.68	9.09	3.99	7.96	9.05	12.05	5.53	3.76
Merged-chr10-98893778-3	chr10	98893684	98893884	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-20858.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.48	4.28	9.13	10.05	6.14	8.78	11.29	9.14	14.55	9.54	8.04	10.02
Merged-chr3-107120104-1	chr3	107120004	107120204	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18537.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	1.21	1.26	6.28	4.42	2.45	5.33	6.98	5.94	8.46	2.51	11.05	5.01
Merged-chr7-122308096-1	chr7	122307996	122308196	+	698.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	18971.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	9.29	3.02	11.98	7.24	1.64	3.76	4.65	2.21	13.77	2.01	10.05	9.71
Merged-chr11-78349853-3	chr11	78349815	78350015	+	698.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011676)	TTS (NM_011676)	3205.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	7.27	5.28	1.14	2.01	5.32	3.45	2.33	6.64	2.95	6.53	5.02	4.07
Merged-chr8-47553863-2	chr8	47553768	47553968	+	698.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20223.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	6.06	5.79	6.28	4.83	9.0	13.17	7.31	18.2	8.06	5.52	11.56	10.65
Merged-chrX-23565745-2	chrX	23565653	23565853	+	698.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127298.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	2.42	8.8	3.42	5.63	10.64	9.09	5.65	9.7	8.06	3.51	7.03	7.52
Merged-chr10-41576046-3	chr10	41575943	41576143	+	698.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045341, exon 3 of 4)	non-coding (NR_045341, exon 3 of 4)	8027.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	12.11	8.3	5.13	9.25	10.64	4.08	9.63	6.42	14.95	6.03	13.06	11.28
Merged-chr2-13432187-2	chr2	13432094	13432294	+	698.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	59682.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.85	0.5	5.7	5.23	15.55	10.35	8.3	13.26	7.28	7.03	9.55	8.14
Merged-chr10-67625589-2	chr10	67625531	67625731	+	698.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-53672.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	2.02	3.02	9.13	9.25	11.05	7.21	5.98	6.39	6.49	5.02	6.53	5.64
Merged-chr5-52116044-1	chr5	52115944	52116144	+	698.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	19973.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	2.83	3.52	6.85	6.44	7.77	5.33	5.98	6.14	3.34	4.52	6.53	4.39
Merged-chr6-51546305-3	chr6	51546224	51546424	+	698.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	1031.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	12.52	4.53	12.55	1.21	8.59	5.02	5.98	5.5	7.67	4.52	14.57	4.7
Merged-chr12-51695188-3	chr12	51695108	51695308	+	698.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-3294.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	6.86	5.53	9.13	7.64	8.59	7.84	9.3	17.36	9.44	13.56	14.07	8.14
Merged-chr10-78028299-3	chr10	78028190	78028390	+	698.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13997.0	NM_001081695	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	8.08	6.54	15.4	7.64	13.09	4.08	2.33	7.68	10.82	4.52	10.05	9.71
Merged-chr16-81462864-1	chr16	81462764	81462964	+	698.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113208, intron 7 of 17)	L1Md_F2|LINE|L1	262167.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	2.02	2.01	2.28	2.82	9.0	5.02	6.64	7.35	4.52	0.0	7.54	0.94
Merged-chr12-76822420-2	chr12	76822315	76822515	+	698.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134050, exon 1 of 7)	5' UTR (NM_134050, exon 1 of 7)	109.0	NM_134050	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.81	4.78	9.7	6.44	5.73	5.96	11.63	10.21	7.87	4.02	7.03	7.21
Merged-chr13-41550734-3	chr13	41550650	41550850	+	698.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	-55466.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.06	4.53	10.27	11.26	7.36	3.45	13.29	6.64	7.08	15.06	13.57	10.02
Merged-chr13-29959210-2	chr13	29959111	29959311	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	MTC|LTR|ERVL-MaLR	25180.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	1.62	2.26	10.84	10.05	11.86	4.08	5.65	5.8	10.62	4.02	13.57	6.58
Merged-chr6-134052068-3	chr6	134051960	134052160	+	698.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	16360.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.48	6.79	14.83	10.86	6.55	13.17	2.66	8.02	8.46	1.51	14.57	6.27
Merged-chr15-80254376-2	chr15	80254280	80254480	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-804.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	2.42	3.77	4.56	4.02	4.91	3.14	2.66	5.83	9.83	6.53	12.06	8.77
Merged-chr2-26493580-2	chr2	26493445	26493645	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10277.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	8.08	4.28	11.41	7.64	8.59	14.11	9.97	5.02	13.77	8.54	7.03	6.89
Merged-chr2-155757443-2	chr2	155757332	155757532	+	698.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6215.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	4.85	7.8	6.28	6.44	0.82	0.0	0.0	0.17	22.82	18.58	11.05	8.77
Merged-chr2-151536069-2	chr2	151535986	151536186	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6397.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	8.08	5.03	6.85	4.83	10.23	16.93	7.64	10.96	7.28	11.05	12.56	6.27
Merged-chrX-36050469-2	chrX	36050369	36050569	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009947, intron 44 of 52)	intron (NM_001009947, intron 44 of 52)	-61639.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	11.31	6.54	4.56	4.02	6.55	8.78	1.66	8.3	9.05	8.03	5.02	8.14
Merged-chr9-100525395-2	chr9	100525293	100525493	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	L1M4c|LINE|L1	-18537.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	11.31	2.01	2.85	0.0	4.91	10.98	1.33	6.64	10.62	5.02	10.55	4.07
Merged-chr9-44454330-2	chr9	44454229	44454429	+	698.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009476, intron 1 of 4)	intron (NM_009476, intron 1 of 4)	438.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	9.29	2.77	4.56	5.63	6.55	9.09	4.32	10.18	12.78	13.05	13.06	8.77
Merged-chr6-24627832-3	chr6	24627747	24627947	+	698.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 5 of 10)	intron (NM_028459, intron 5 of 10)	30076.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	9.29	3.52	5.13	6.84	6.95	0.63	8.64	10.37	10.82	7.53	13.57	9.71
Merged-chr4-134124241-5	chr4	134124169	134124369	+	698.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045571, intron 10 of 13)	intron (NR_045571, intron 10 of 13)	4484.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	9.29	6.29	2.85	6.84	4.91	3.14	3.32	1.46	9.83	9.54	7.54	12.53
Merged-chr19-55098743-3	chr19	55098609	55098809	+	698.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356285, intron 3 of 22)	intron (NM_001356285, intron 3 of 22)	768.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	2.83	2.77	7.99	6.44	8.18	6.59	7.97	10.07	9.83	4.02	6.03	5.64
Merged-chr18-75716329-3	chr18	75716229	75716429	+	698.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18633.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	7.27	9.56	13.12	8.45	4.91	9.09	6.31	10.57	8.46	9.04	14.57	6.89
Merged-chr11-59787660-2	chr11	59787576	59787776	+	698.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_110894)	promoter-TSS (NR_110894)	-19.0	NM_001290283	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	8.08	7.29	8.56	10.05	5.32	14.11	5.65	12.5	6.1	5.02	11.05	9.08
Merged-chr11-9531059-3	chr11	9530955	9531155	+	698.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339113.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.86	7.55	7.99	12.47	4.5	8.15	12.29	21.9	10.82	15.06	20.1	8.77
Merged-chr11-18877670-2	chr11	18877573	18877773	+	698.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141296.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.44	6.29	9.7	3.22	4.09	7.53	4.32	9.62	8.26	9.04	11.56	3.76
Merged-chr1-80191856-2	chr1	80191754	80191954	+	698.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	22090.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	3.23	6.29	13.69	8.45	4.09	8.78	8.64	7.68	5.31	1.0	5.53	5.33
Merged-chr2-167067745-3	chr2	167067646	167067846	+	698.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2453.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	9.69	8.55	9.7	3.22	6.14	5.64	5.31	9.56	7.87	7.53	14.07	8.14
Merged-chr6-116439710-2	chr6	116439616	116439816	+	698.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21462.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	7.67	6.29	5.7	14.08	11.05	8.47	10.96	9.28	11.6	4.02	6.03	4.7
Merged-chr6-38254280-3	chr6	38254148	38254348	+	698.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194061)	promoter-TSS (NM_194061)	-239.0	NM_194061	330286.0	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	8.08	4.02	5.7	3.62	10.64	15.68	6.98	11.86	10.62	9.54	17.59	5.33
Merged-chr3-144401450-1	chr3	144401350	144401550	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	168766.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.23	2.26	3.99	8.85	7.36	3.76	4.32	8.3	4.52	6.53	7.54	7.21
Merged-chr16-44121068-1	chr16	44120968	44121168	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18191.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	1.62	2.52	2.28	2.41	0.82	3.45	4.65	2.44	4.52	5.02	1.51	3.13
Merged-chr16-45967675-1	chr16	45967575	45967775	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152226, intron 2 of 2)	intron (NR_152226, intron 2 of 2)	22069.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	4.44	2.26	2.28	6.03	4.91	7.84	4.32	8.33	4.52	5.52	10.05	4.07
Merged-chr16-75906908-1	chr16	75906808	75907008	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	2358.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	2.42	5.53	0.0	5.63	2.86	3.76	1.0	2.75	9.64	8.54	4.52	1.88
Merged-chr11-120887367-1	chr11	120887267	120887467	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	45505.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	10.9	4.78	2.85	4.02	1.64	10.98	1.66	6.45	5.7	1.0	4.52	5.33
Merged-chr1-56977310-2	chr1	56977226	56977426	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358580, intron 1 of 11)	CpG	1324.0	NM_001358581	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	3.63	3.52	2.28	2.41	3.68	8.15	4.98	7.74	12.0	3.01	9.04	2.82
Merged-chr2-72197233-1	chr2	72197133	72197333	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-88404.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.81	0.0	1.14	2.01	1.64	0.0	0.0	1.18	10.23	12.55	16.08	6.58
Merged-chr16-49856868-1	chr16	49856768	49856968	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1214.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.23	4.02	5.13	6.44	2.05	4.39	6.98	4.6	3.54	7.03	3.52	3.76
Merged-chr2-135488499-1	chr2	135488399	135488599	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94721.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	4.85	4.53	17.11	4.42	4.91	3.14	2.66	6.39	11.6	11.55	7.54	7.52
Merged-chr8-107587786-1	chr8	107587686	107587886	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010817, intron 1 of 6)	intron (NM_010817, intron 1 of 6)	696.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	6.06	7.29	4.56	2.01	1.23	3.14	5.31	1.65	8.65	4.02	6.03	6.27
Merged-chr7-118821460-2	chr7	118821331	118821531	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 26 of 30)	intron (NM_027815, intron 26 of 30)	34182.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	2.42	1.76	3.42	4.02	4.5	4.08	11.96	11.44	5.7	4.52	4.52	6.58
Merged-chr5-149242646-1	chr5	149242546	149242746	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22358.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	3.63	2.26	3.42	5.63	5.73	4.08	6.31	6.0	4.33	5.02	7.54	2.19
Merged-chr14-52190871-1	chr14	52190771	52190971	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	6368.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	4.04	4.78	6.28	3.62	6.55	6.9	4.32	7.29	1.18	1.0	1.0	2.19
Merged-chr9-40344927-1	chr9	40344827	40345027	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1318.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.02	4.02	9.7	4.42	3.27	7.84	3.32	6.42	8.46	1.51	6.03	2.51
Merged-chr5-102537915-1	chr5	102537815	102538015	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	56524.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.23	2.01	1.14	0.8	0.82	5.64	5.31	6.36	2.75	6.53	3.52	10.34
Merged-chr2-118126111-1	chr2	118126011	118126211	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011580, exon 22 of 22)	3' UTR (NM_011580, exon 22 of 22)	14235.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	5.25	5.53	7.99	14.48	5.32	9.72	4.65	6.9	9.05	6.03	7.03	7.52
Merged-chr12-84752830-1	chr12	84752730	84752930	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20282.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	3.63	4.78	1.71	3.22	9.82	4.08	2.66	6.48	5.51	9.04	5.53	1.88
Merged-chr17-84120154-1	chr17	84120054	84120254	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41494.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	1.62	2.77	1.71	3.22	4.09	2.2	6.31	5.38	5.7	2.01	4.02	1.57
Merged-chr16-73650569-2	chr16	73650463	73650663	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	691504.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.5	1.14	0.8	7.77	3.76	4.32	14.97	7.67	3.51	10.05	5.33
Merged-chr1-53870911-1	chr1	53870811	53871011	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	MTB_Mm|LTR|ERVL-MaLR	21487.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	1.21	2.77	0.0	4.83	2.05	6.9	5.31	5.97	5.7	10.04	7.03	4.07
Merged-chr11-77355526-1	chr11	77355426	77355626	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	7246.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.63	2.01	1.14	2.41	5.73	6.59	1.0	5.8	4.72	4.52	5.02	0.0
Merged-chrX-167207943-3	chrX	167207825	167208025	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021278, intron 2 of 2)	intron (NM_021278, intron 2 of 2)	1293.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	1.21	6.29	6.85	3.62	2.45	8.47	4.98	5.33	11.6	9.04	12.56	7.21
Merged-chr2-120967631-1	chr2	120967531	120967731	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009461, intron 1 of 46)	L2|LINE|L2	3084.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	5.65	4.28	3.42	0.8	3.68	2.51	5.31	7.09	1.77	2.01	2.51	3.45
Merged-chr7-67546477-1	chr7	67546377	67546577	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028144, intron 5 of 8)	L1MC4a|LINE|L1	98759.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.83	4.53	4.56	2.82	2.45	1.25	5.65	7.18	3.54	1.0	0.0	3.13
Merged-chr15-35664200-1	chr15	35664100	35664300	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 30 of 61)	intron (NM_177151, intron 30 of 61)	-3153.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	4.85	1.01	1.14	2.01	0.82	1.57	4.98	5.24	1.97	4.52	0.5	0.31
Merged-chr12-111157810-2	chr12	111157712	111157912	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8558.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	2.02	10.06	12.55	0.8	5.73	8.47	6.31	4.18	7.28	18.58	10.05	5.01
Merged-chr4-46565242-3	chr4	46565094	46565294	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	1246.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.44	6.29	5.7	6.44	8.59	9.72	7.64	17.33	8.06	8.54	4.52	7.52
Merged-chr14-50784574-2	chr14	50784457	50784657	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360545, intron 1 of 8)	intron (NM_001360545, intron 1 of 8)	963.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	6.06	5.79	5.7	15.28	6.14	7.53	5.65	11.94	7.47	6.53	24.12	8.14
Merged-chr5-123720506-1	chr5	123720406	123720606	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027494, intron 1 of 13)	CpG	538.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	2.42	4.53	2.85	2.01	2.45	7.53	3.32	0.59	7.47	5.02	10.55	4.39
Merged-chr4-95206889-1	chr4	95206789	95206989	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-154667.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.23	0.5	0.0	2.01	2.86	6.27	5.65	5.07	1.18	2.51	5.02	3.13
Merged-chr13-94476409-1	chr13	94476309	94476509	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009680, intron 17 of 26)	intron (NM_009680, intron 17 of 26)	117449.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	6.06	2.26	7.99	6.03	2.86	4.7	6.31	8.19	3.74	2.51	3.52	2.82
Merged-chr2-130851671-1	chr2	130851571	130851771	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11526.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.81	0.25	0.0	0.0	7.36	2.51	13.62	6.98	0.0	1.0	0.0	0.0
Merged-chr13-49193223-1	chr13	49193123	49193323	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5676.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	1.21	2.77	1.14	2.41	1.64	3.76	4.65	1.74	9.44	0.0	3.52	5.33
Merged-chr2-164523610-1	chr2	164523510	164523710	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	26085.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	6.46	5.28	3.42	2.41	10.64	23.2	6.98	3.28	3.15	1.51	1.0	0.94
Merged-chr2-28681830-1	chr2	28681730	28681930	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289575, intron 19 of 22)	intron (NM_001289575, intron 19 of 22)	17821.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	6.06	2.77	3.42	8.45	4.09	1.88	3.99	6.08	3.93	3.51	3.01	0.94
Merged-chr2-164670464-1	chr2	164670364	164670564	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161806, intron 1 of 4)	intron (NM_001161806, intron 1 of 4)	3623.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	0.81	1.51	2.85	0.8	2.05	1.57	6.98	5.38	4.13	4.02	2.01	5.33
Merged-chr15-37696446-1	chr15	37696346	37696546	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	-15872.0	NM_001359839	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	1.21	0.5	0.0	0.8	4.09	1.88	1.0	3.28	10.62	3.51	10.55	5.33
Merged-chr6-72022075-1	chr6	72021975	72022175	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	Lx3_Mus|LINE|L1	20453.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	6.46	7.29	1.14	5.23	2.05	6.9	1.99	1.12	14.95	10.54	14.07	3.76
Merged-chr19-12026811-1	chr19	12026711	12026911	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9929.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.23	1.76	5.7	3.22	4.09	0.63	4.98	9.87	3.34	2.51	4.52	6.58
Merged-chr1-171501711-2	chr1	171501588	171501788	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1790.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	12.92	6.29	2.85	3.62	6.95	10.35	2.99	3.45	8.06	5.52	3.52	3.13
Merged-chr16-33372787-1	chr16	33372687	33372887	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	7949.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	3.63	3.02	2.28	7.24	5.73	5.64	5.31	7.04	3.15	2.51	11.56	5.01
Merged-chr13-9430155-1	chr13	9430055	9430255	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153630.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.04	6.29	2.28	5.63	4.91	5.33	6.98	5.3	1.77	2.01	2.01	5.95
Merged-chr2-127376285-1	chr2	127376185	127376385	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12999.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	2.42	4.02	4.56	1.61	6.55	2.51	0.33	3.14	7.47	5.52	4.02	6.89
Merged-chr7-33876100-1	chr7	33876000	33876200	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	68885.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	1.62	4.02	2.28	2.41	5.32	0.63	0.66	6.08	0.79	0.0	4.02	1.88
Merged-chr4-136808754-1	chr4	136808654	136808854	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010142, intron 1 of 15)	intron (NM_010142, intron 1 of 15)	27258.0	NM_001290753	13844.0	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	10.09	7.04	5.7	4.42	2.86	3.76	3.65	1.88	0.39	0.0	2.51	0.63
Merged-chr13-90051882-1	chr13	90051782	90051982	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	37726.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	6.06	7.04	9.13	2.41	9.41	4.7	3.32	5.66	5.31	2.01	2.01	1.25
Merged-chr14-27315583-1	chr14	27315483	27315683	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-20454.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.67	4.02	5.7	7.24	10.64	5.33	12.62	7.15	6.29	3.01	6.03	2.51
Merged-chr19-8818676-3	chr19	8818538	8818738	+	697.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	656.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	5.25	10.31	11.98	8.04	4.5	7.84	4.32	5.66	11.21	8.54	5.02	8.77
Merged-chr18-62183844-3	chr18	62183742	62183942	+	697.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	3742.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	11.71	7.29	2.28	8.04	10.64	12.54	2.99	4.12	11.6	3.51	17.08	7.21
Merged-chr6-51580481-3	chr6	51580375	51580575	+	697.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	35182.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	10.09	9.06	8.56	5.63	12.68	11.29	8.97	11.33	18.49	9.54	22.61	5.95
Merged-chr19-29370267-3	chr19	29370142	29370342	+	697.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2804.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	4.44	8.8	13.69	0.8	6.95	5.64	3.32	0.98	9.44	13.56	10.55	5.33
Merged-chr2-131088627-2	chr2	131088526	131088726	+	697.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1861.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	2.83	4.53	6.85	5.63	13.91	6.9	10.3	11.89	8.46	2.51	6.53	7.52
Merged-chr7-47053486-3	chr7	47053393	47053593	+	697.888916	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026436, exon 3 of 3)	exon (NM_026436, exon 3 of 3)	2853.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	2.42	4.53	4.56	4.83	5.73	4.7	4.65	7.07	8.65	2.01	9.04	3.76
Merged-chr9-57629450-3	chr9	57629352	57629552	+	697.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 7 of 14)	intron (NM_001304761, intron 7 of 14)	-8678.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	8.48	5.28	3.99	4.83	6.95	6.59	3.99	5.52	14.16	15.06	13.57	10.34
Merged-chr1-88745440-3	chr1	88745337	88745537	+	697.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9453.0	NR_040493	78650.0	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	8.88	9.56	12.55	10.05	11.45	10.03	7.97	7.43	7.87	9.54	12.56	6.89
Merged-chr11-80174231-3	chr11	80174091	80174291	+	697.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-9681.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.06	3.27	0.0	2.82	8.18	5.33	4.98	7.01	3.74	11.05	4.52	9.4
Merged-chr2-33887700-2	chr2	33887585	33887785	+	697.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	261.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	6.86	7.8	5.7	5.63	11.45	11.92	13.62	7.35	4.92	9.04	13.57	6.27
Merged-chr1-133046090-2	chr1	133045985	133046185	+	697.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001099276)	promoter-TSS (NM_001099276)	73.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	9.29	6.79	6.28	8.04	15.55	10.35	10.3	7.21	10.62	1.51	6.53	6.89
Merged-chr12-72310314-2	chr12	72310219	72310419	+	697.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	-73592.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.23	0.5	4.56	6.03	6.95	1.25	4.65	5.52	12.19	3.01	12.56	7.21
Merged-chr7-101503992-2	chr7	101503873	101504073	+	697.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001143849, exon 15 of 30)	exon (NM_001143849, exon 15 of 30)	28597.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	6.06	5.28	3.99	6.03	3.68	4.39	0.66	5.5	11.41	9.54	16.08	9.4
Merged-chr3-14874611-3	chr3	14874526	14874726	+	697.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11088.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	6.86	6.29	11.41	12.07	4.09	8.47	5.31	6.98	12.19	13.05	6.53	4.39
Merged-chr18-13787071-3	chr18	13786918	13787118	+	697.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185715.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	6.46	4.53	2.85	6.84	11.45	3.14	8.97	5.92	6.1	5.02	7.03	1.25
Merged-chr8-46311344-3	chr8	46311217	46311417	+	697.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-16646.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	8.48	4.28	15.4	8.85	17.59	3.76	4.98	11.78	10.23	6.53	11.05	8.46
Merged-chr3-104403859-3	chr3	104403771	104403971	+	697.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108047.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.04	4.02	9.13	7.64	11.45	10.35	5.31	11.69	7.47	13.56	9.04	14.1
Merged-chr11-5945301-2	chr11	5945207	5945407	+	697.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010292, intron 1 of 9)	intron (NM_010292, intron 1 of 9)	4774.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	5.25	2.01	4.56	6.84	2.45	7.84	5.65	7.12	5.31	7.03	21.1	8.46
Merged-chr7-30279391-2	chr7	30279247	30279447	+	697.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-747.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	6.06	3.77	2.28	6.03	8.18	1.25	6.98	5.19	2.75	1.51	6.53	2.82
Merged-chr1-151614730-2	chr1	151614620	151614820	+	697.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	43347.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.25	3.27	7.42	3.22	8.18	5.02	4.65	8.66	11.01	5.02	12.56	5.01
Merged-chr3-88721139-2	chr3	88721031	88721231	+	697.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028056, intron 3 of 5)	RSINE1|SINE|B4	4277.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	6.46	8.3	5.7	6.44	6.14	5.02	5.98	6.08	12.59	9.04	19.09	6.58
Merged-chr14-60443968-2	chr14	60443874	60444074	+	697.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	65688.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	8.88	9.31	3.42	8.45	8.18	9.09	6.98	5.21	9.44	12.55	7.54	3.76
Merged-chr5-137823398-3	chr5	137823317	137823517	+	697.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001005426)	TTS (NM_001005426)	12861.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	15.75	10.06	11.41	6.44	8.59	10.98	5.31	5.58	12.0	10.04	12.56	6.27
Merged-chr2-43902804-3	chr2	43902697	43902897	+	697.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	153973.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	7.27	5.53	2.28	12.87	7.77	4.39	6.31	11.61	17.9	12.05	10.05	5.01
Merged-chr5-135912633-3	chr5	135912549	135912749	+	697.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	21992.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	4.85	3.27	12.55	18.5	1.64	9.41	4.32	6.93	4.13	3.51	11.05	8.46
Merged-chr7-98671691-2	chr7	98671572	98671772	+	697.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15103.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	4.44	6.54	5.7	5.63	11.05	7.21	11.29	9.62	5.7	10.04	6.03	5.33
Merged-chr2-120563161-2	chr2	120563039	120563239	+	697.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	720.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	6.46	3.27	3.99	5.23	5.32	6.9	6.31	4.71	10.82	9.04	13.57	10.65
Merged-chr19-10846248-3	chr19	10846177	10846377	+	697.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3733.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	10.09	10.82	3.42	13.67	9.82	8.15	2.99	1.91	7.47	6.53	14.57	11.9
Merged-chr11-79286526-3	chr11	79286424	79286624	+	697.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31829.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.65	11.07	11.41	8.04	5.73	7.21	3.99	3.17	6.69	4.52	4.52	6.89
Merged-chr4-130841188-3	chr4	130841105	130841305	+	697.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48668.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	12.52	3.77	5.13	8.04	15.14	9.09	8.64	14.69	10.03	8.54	8.04	2.82
Merged-chr6-41191151-3	chr6	41191052	41191252	+	697.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111120.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	10.5	5.28	14.83	16.49	4.09	3.76	9.3	9.87	9.44	14.56	15.07	20.68
Merged-chr19-4310046-3	chr19	4309954	4310154	+	697.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3832.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.25	8.3	7.99	7.24	5.73	3.45	1.66	5.83	18.69	24.1	16.08	14.72
Merged-chr4-45941895-3	chr4	45941793	45941993	+	697.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198660, exon 32 of 38)	exon (NM_198660, exon 32 of 38)	-23442.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	9.69	8.3	9.7	4.83	5.32	13.17	7.97	7.93	7.87	12.05	15.07	11.59
Merged-chr2-84476801-1	chr2	84476701	84476901	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177320)	promoter-TSS (NM_001177320)	-26.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	5.65	4.53	5.7	6.44	11.45	6.59	8.3	5.38	5.51	3.01	18.59	3.45
Merged-chr6-134141475-2	chr6	134141364	134141564	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105764.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.08	6.54	6.85	3.22	5.32	6.9	3.32	11.02	3.93	3.51	6.53	1.88
Merged-chr1-98591221-2	chr1	98591122	98591322	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAP1-MM_I-int|LTR|ERVK	170098.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	10.5	14.09	12.55	0.0	5.73	13.8	4.98	5.1	1.57	0.0	2.01	0.63
Merged-chr17-35267709-2	chr17	35267608	35267808	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010380)	TTS (NM_010380)	4585.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	9.69	13.08	5.7	2.01	11.05	6.9	1.33	2.16	2.95	5.52	0.0	1.57
Merged-chr1-173437728-1	chr1	173437628	173437828	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	MIRb|SINE|MIR	17124.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.85	2.52	5.7	5.63	7.36	4.7	7.64	8.07	6.49	4.52	8.54	7.21
Merged-chr12-59078659-2	chr12	59078552	59078752	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	11733.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	2.83	3.77	6.28	2.41	6.55	4.39	5.31	6.28	9.64	5.52	9.04	10.02
Merged-chr15-79467115-2	chr15	79467014	79467214	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24971.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.85	3.02	7.99	4.02	11.05	8.78	4.65	6.76	13.57	13.56	20.6	6.58
Merged-chr19-40682794-1	chr19	40682694	40682894	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	23024.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.48	3.27	2.28	0.0	6.14	1.25	7.31	6.81	2.36	2.01	2.01	3.45
Merged-chr5-134907340-1	chr5	134907240	134907440	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029681)	promoter-TSS (NM_029681)	-607.0	NM_194065	76629.0	Mm.159750	NM_029681	ENSMUSG00000040576	Tmem270	1700111I05Rik|Wbscr28	transmembrane protein 270	protein-coding	5.65	5.53	7.42	8.04	4.09	8.47	4.32	9.81	4.72	9.54	7.03	2.19
Merged-chr9-14273123-1	chr9	14273023	14273223	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3178.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	3.63	2.26	1.14	2.41	11.86	7.21	1.66	6.42	7.28	11.55	3.01	4.07
Merged-chr2-80038661-2	chr2	80038563	80038763	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355142, exon 1 of 15)	5' UTR (NM_001355142, exon 1 of 15)	239.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.21	5.03	3.42	7.64	7.36	3.14	5.65	10.85	9.83	8.54	8.54	8.14
Merged-chr11-97432163-3	chr11	97432043	97432243	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18017.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	8.08	8.3	6.28	0.0	6.14	7.21	0.33	6.62	11.8	9.04	3.52	7.21
Merged-chr5-32053707-2	chr5	32053605	32053805	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 10 of 11)	RMER17D2|LTR|ERVK	-82767.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.23	1.01	1.71	1.61	3.27	5.33	1.99	6.67	7.67	12.05	16.08	2.51
Merged-chr5-77463780-1	chr5	77463680	77463880	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1708.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.81	1.51	6.85	5.63	7.36	4.7	5.98	12.5	1.57	11.05	4.52	6.58
Merged-chr7-98584744-3	chr7	98584658	98584858	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71811.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	9.29	13.58	12.55	6.03	7.36	8.78	4.98	5.89	9.64	11.05	8.04	8.46
Merged-chr19-9988389-2	chr19	9988267	9988467	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	5721.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.27	9.81	1.14	3.22	13.5	23.83	2.99	1.37	6.29	10.54	4.02	5.95
Merged-chrX-49209581-2	chrX	49209469	49209669	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	RLTR13B1|LTR|ERVK	78673.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	4.85	2.01	10.27	10.05	5.32	10.66	5.98	3.59	11.01	16.57	9.55	13.47
Merged-chr12-91587569-2	chr12	91587477	91587677	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2072.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.04	1.51	0.0	5.63	0.41	5.96	4.32	5.52	8.26	4.52	14.57	2.82
Merged-chr13-74809288-1	chr13	74809188	74809388	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301153)	promoter-TSS (NM_001301153)	-528.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	1.62	1.51	7.42	16.49	7.77	2.51	5.31	9.87	9.24	2.01	4.52	6.58
Merged-chr10-84515653-3	chr10	84515559	84515759	+	697.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18229.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	6.86	6.04	15.97	5.23	12.27	6.59	3.99	8.52	15.34	7.53	10.55	7.83
Merged-chr10-118977884-3	chr10	118977786	118977986	+	697.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50743.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	12.11	4.28	10.27	6.03	5.32	20.7	6.64	9.36	17.51	7.53	13.57	0.31
Merged-chr17-34627550-3	chr17	34627461	34627661	+	697.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019441)	promoter-TSS (NM_019441)	-126.0	NM_001302396	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	6.86	4.78	3.99	7.24	13.09	16.93	6.64	7.63	6.29	14.56	11.56	9.4
Merged-chr7-75709461-3	chr7	75709356	75709556	+	697.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-138882.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	10.5	10.56	20.54	12.07	7.36	7.53	4.98	24.03	11.41	12.55	11.05	15.04
Merged-chr4-128839324-2	chr4	128839195	128839395	+	697.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33183.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.65	7.04	2.28	0.8	3.27	7.53	5.65	4.88	9.24	5.02	7.03	8.14
Merged-chr9-108345392-2	chr9	108345302	108345502	+	697.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2429.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	8.48	10.56	10.27	8.04	7.77	11.92	6.98	3.45	8.65	9.04	7.03	5.95
Merged-chr8-128039598-2	chr8	128039480	128039680	+	697.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	238645.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	3.23	1.01	1.14	10.86	4.09	5.33	4.98	5.89	15.54	5.02	9.55	7.21
Merged-chr17-86967878-2	chr17	86967765	86967965	+	697.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	4754.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.65	6.29	7.99	9.25	6.55	7.21	8.97	5.86	5.31	7.53	7.03	3.45
Merged-chr3-130708666-3	chr3	130708540	130708740	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	804.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	10.5	7.8	2.28	4.42	7.77	5.33	10.3	10.15	6.88	7.53	13.06	8.14
Merged-chr2-144219490-3	chr2	144219387	144219587	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30197.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	8.88	6.29	9.13	8.45	8.18	10.66	1.33	6.84	9.24	9.04	16.08	3.76
Merged-chr5-92444363-3	chr5	92444249	92444449	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 11 of 11)	intron (NM_007644, intron 11 of 11)	-9150.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	4.04	6.29	11.41	7.64	9.41	5.96	7.97	8.61	6.49	4.52	15.58	7.21
Merged-chr2-164070509-1	chr2	164070409	164070609	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_025996, exon 1 of 7)	exon (NM_025996, exon 1 of 7)	593.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	10.5	10.06	22.25	13.27	4.5	8.78	12.29	6.42	9.44	13.05	10.55	16.92
Merged-chr1-106697749-3	chr1	106697646	106697846	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	16544.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	2.02	3.27	11.41	10.46	4.09	5.96	9.97	13.07	7.87	3.01	15.58	11.59
Merged-chr4-43030951-1	chr4	43030851	43031051	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023231, intron 2 of 9)	CpG	433.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	11.31	7.8	8.56	13.27	11.05	5.64	1.99	5.44	6.1	2.51	6.53	6.58
Merged-chr15-88514458-4	chr15	88514420	88514620	+	697.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85782.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	6.06	7.8	13.69	6.03	15.96	5.33	8.97	6.42	6.29	8.03	19.09	5.95
Merged-chr2-31256761-2	chr2	31256659	31256859	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	10836.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	3.23	2.26	1.14	1.61	6.55	17.25	3.65	7.96	6.49	4.02	11.05	12.53
Merged-chr10-20788978-2	chr10	20788877	20789077	+	697.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-63899.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.65	9.56	9.13	6.44	9.0	5.64	5.31	9.95	4.33	6.53	2.51	1.25
Merged-chr6-43637426-2	chr6	43637291	43637491	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	28887.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	2.02	3.27	5.7	4.83	9.41	7.84	5.31	1.71	8.26	6.53	9.04	3.13
Merged-chr13-23572718-4	chr13	23572732	23572932	+	697.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178196)	TTS (NM_178196)	1358.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	7.67	3.77	14.26	3.62	2.45	2.51	2.99	1.21	5.51	2.01	5.53	5.33
Merged-chr7-100429319-2	chr7	100429229	100429429	+	697.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017985, intron 20 of 32)	MER90|LTR|ERV1	-43662.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	10.09	3.27	6.85	5.23	2.45	10.98	4.98	5.19	13.96	4.52	6.03	5.64
Merged-chr11-99164661-2	chr11	99164567	99164767	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9590.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	13.73	17.36	11.41	6.03	11.86	20.7	8.64	6.08	32.65	14.56	25.12	9.08
Merged-chr16-3893011-2	chr16	3892924	3893124	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	8405.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	4.85	7.8	9.13	1.61	12.27	3.76	6.64	6.81	11.6	8.03	10.05	5.01
Merged-chr2-174672703-3	chr2	174672629	174672829	+	697.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	29195.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	8.48	7.8	7.99	7.64	6.55	10.98	4.32	4.85	12.0	10.54	6.53	6.27
Merged-chr4-6452595-3	chr4	6452493	6452693	+	697.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1678.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	7.67	6.04	6.28	7.64	9.41	4.08	7.31	8.55	9.05	11.05	9.04	5.95
Merged-chr10-118049484-1	chr10	118049384	118049584	+	697.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92303.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.83	4.28	4.56	13.67	3.68	2.51	3.32	6.81	10.82	8.54	12.06	11.9
Merged-chr8-122566844-3	chr8	122566732	122566932	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1183.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	6.46	7.55	2.85	6.03	5.32	5.96	2.99	4.79	8.26	9.04	11.56	12.53
Merged-chr19-11060561-3	chr19	11060463	11060663	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9997.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	9.69	14.84	7.99	3.22	9.82	15.68	4.32	5.21	17.9	15.06	3.52	0.94
Merged-chr6-65146547-3	chr6	65146436	65146636	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1806.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	7.27	6.04	16.54	11.66	13.09	9.09	6.64	15.9	14.36	4.02	9.55	5.33
Merged-chr5-124470705-3	chr5	124470684	124470884	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	7451.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	9.69	10.06	3.42	3.22	5.73	7.21	9.97	9.34	7.87	8.54	2.01	4.07
Merged-chr5-32754096-3	chr5	32754004	32754204	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-7762.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	9.69	5.53	7.99	12.07	9.82	5.33	7.64	6.36	12.78	8.54	16.08	10.65
Merged-chr8-120599732-3	chr8	120599637	120599837	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-10662.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	10.09	11.07	4.56	6.44	10.23	13.17	1.33	6.5	18.49	16.57	12.56	11.28
Merged-chr2-142883033-2	chr2	142882917	142883117	+	697.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	18447.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	2.42	4.53	6.28	5.23	14.32	9.72	7.97	18.64	6.69	2.01	10.55	7.21
Merged-chr9-77835950-2	chr9	77835844	77836044	+	697.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81409.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.63	3.52	0.57	0.4	5.73	8.47	7.97	10.93	10.23	11.05	20.6	6.58
Merged-chr8-117133974-2	chr8	117133868	117134068	+	697.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163028)	TTS (NM_001163028)	-24167.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	6.06	9.06	7.99	16.89	7.36	5.33	2.66	4.96	7.67	9.54	18.59	5.64
Merged-chr5-148503581-2	chr5	148503455	148503655	+	697.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48118.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.63	1.51	10.27	5.63	9.0	8.47	3.65	5.72	2.16	7.53	11.05	4.39
Merged-chr11-70213130-2	chr11	70213030	70213230	+	697.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153081)	promoter-TSS (NM_153081)	-780.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	14.94	8.55	16.54	6.44	10.23	13.17	8.97	7.49	8.46	14.06	13.06	7.52
Merged-chr1-177726272-3	chr1	177726155	177726355	+	697.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR34D_MM|LTR|ERVK	-3559.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	7.67	6.79	9.13	5.63	9.82	15.99	7.64	2.55	14.75	5.52	14.57	10.96
Merged-chr9-45236006-3	chr9	45235871	45236071	+	697.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	30736.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	7.27	6.29	12.55	3.22	9.41	5.64	4.98	11.58	5.9	7.03	9.04	7.83
Merged-chr2-49771265-2	chr2	49771182	49771382	+	697.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008449, exon 26 of 26)	3' UTR (NM_008449, exon 26 of 26)	-16404.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	4.44	9.31	7.42	6.44	9.0	7.53	8.97	6.76	5.31	10.54	9.04	3.76
Merged-chr2-139381879-2	chr2	139381771	139381971	+	697.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112042.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	9.69	8.55	4.56	14.08	10.64	5.64	6.31	6.45	6.29	5.02	14.57	5.64
Merged-chr16-17914731-3	chr16	17914635	17914835	+	697.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029469, intron 1 of 2)	CpG-5570	324.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	2.83	4.53	6.28	6.03	6.95	2.51	2.33	3.17	6.49	2.01	2.51	5.33
Merged-chr1-52170259-3	chr1	52170156	52170356	+	697.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081081, intron 14 of 17)	B3A|SINE|B2	50634.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	8.48	6.29	2.85	13.67	9.82	12.23	13.29	9.87	5.9	11.55	11.05	1.25
Merged-chr10-117910114-2	chr10	117909980	117910180	+	697.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15379.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	3.23	0.75	4.56	9.25	9.82	7.84	3.65	8.69	10.62	9.04	7.54	5.64
Merged-chr7-116603945-3	chr7	116603822	116604022	+	697.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	99553.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	8.48	6.29	10.84	6.44	7.36	10.35	6.64	7.85	14.16	13.05	8.04	9.08
Merged-chr2-171719418-1	chr2	171719318	171719518	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	243381.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	4.04	9.81	4.56	11.26	7.36	4.39	3.32	10.54	6.1	3.01	2.01	2.19
Merged-chr5-135487090-1	chr5	135486990	135487190	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	58032.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	1.21	1.01	0.57	1.61	2.86	5.96	1.99	6.22	4.92	10.04	11.56	4.7
Merged-chr9-65666196-1	chr9	65666096	65666296	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10352.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	2.02	2.01	9.13	1.61	7.36	2.2	6.98	4.04	2.56	1.0	4.02	4.07
Merged-chr12-41378131-1	chr12	41378031	41378231	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	107926.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.63	3.02	2.28	3.22	0.82	6.27	2.33	6.06	1.77	0.5	7.03	3.45
Merged-chrX-99043437-1	chrX	99043337	99043537	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	856.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	2.83	1.01	6.85	3.62	3.27	7.84	4.98	7.01	2.36	3.01	6.53	6.89
Merged-chr15-102458484-1	chr15	102458384	102458584	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-686.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	5.65	5.53	1.71	4.83	10.23	10.98	2.99	5.19	8.06	8.03	3.01	10.65
Merged-chr5-8953922-1	chr5	8953822	8954022	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008830, intron 25 of 27)	intron (NM_008830, intron 25 of 27)	43224.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	5.25	1.01	11.98	5.63	4.09	2.51	4.65	5.5	0.98	1.51	2.51	1.88
Merged-chr15-102460186-1	chr15	102460086	102460286	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025385, intron 3 of 4)	intron (NM_025385, intron 3 of 4)	1016.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.63	6.29	10.84	4.83	3.27	13.8	6.98	5.3	9.05	10.04	5.53	6.89
Merged-chr16-93691482-1	chr16	93691382	93691582	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_173047)	TTS (NM_173047)	8263.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	6.46	4.53	1.71	4.83	2.86	11.29	4.65	4.79	3.34	2.51	1.51	9.08
Merged-chr11-77680274-1	chr11	77680174	77680374	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-5865.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	2.42	5.28	2.28	0.8	4.5	6.27	6.64	6.42	3.15	4.02	8.54	3.45
Merged-chr16-50431124-1	chr16	50431024	50431224	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027444, intron 1 of 16)	intron (NM_027444, intron 1 of 16)	1265.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	10.09	6.29	2.28	0.8	6.95	6.59	5.31	5.83	3.74	2.01	2.01	3.45
Merged-chr1-172203768-2	chr1	172203672	172203872	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	3032.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	7.27	7.04	6.85	8.45	3.27	4.08	4.65	10.46	4.72	4.02	9.55	6.27
Merged-chr9-99358504-1	chr9	99358404	99358604	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177775)	promoter-TSS (NM_177775)	26.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.63	2.77	1.71	0.0	1.23	1.88	2.33	6.67	2.75	3.51	1.0	8.77
Merged-chr17-6972923-1	chr17	6972823	6973023	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5937.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	4.85	11.57	13.12	3.22	4.09	5.64	0.66	0.48	5.7	5.52	1.51	3.45
Merged-chr16-10451451-1	chr16	10451351	10451551	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-4089.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	8.88	4.53	2.85	4.42	6.55	5.64	3.65	3.81	9.44	4.52	5.02	5.95
Merged-chr6-65569934-1	chr6	65569834	65570034	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20464.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	5.25	7.55	2.85	6.03	7.77	6.27	3.99	5.64	18.1	5.52	6.03	3.76
Merged-chr15-52510353-1	chr15	52510253	52510453	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202092.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	5.65	2.01	3.99	7.24	0.82	3.14	4.98	7.12	2.36	3.51	7.54	4.07
Merged-chr7-47150850-1	chr7	47150750	47150950	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17166.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	3.23	4.78	2.28	0.0	3.68	3.14	4.32	1.96	12.0	5.02	4.52	9.08
Merged-chr3-27278361-1	chr3	27278261	27278461	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38716.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	1.62	5.53	6.28	3.22	0.82	3.76	4.65	6.25	5.31	4.02	7.03	0.94
Merged-chr5-72291830-1	chr5	72291730	72291930	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 21 of 22)	intron (NR_003966, intron 21 of 22)	88487.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	2.42	8.05	6.85	1.61	2.05	7.21	7.97	9.9	2.95	2.51	4.02	4.07
Merged-chr15-23587991-1	chr15	23587891	23588091	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	551528.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	1.62	4.02	0.0	2.01	2.45	3.45	6.98	5.94	6.88	3.01	6.53	3.45
Merged-chr3-27200895-1	chr3	27200795	27200995	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	17891.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.65	2.77	1.71	2.82	5.73	2.82	2.99	6.79	1.57	5.02	2.01	3.76
Merged-chr13-74192791-1	chr13	74192691	74192891	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177333, exon 4 of 13)	exon (NM_177333, exon 4 of 13)	15909.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	2.42	4.28	1.14	4.83	0.82	6.27	5.65	6.45	2.56	3.51	13.57	5.01
Merged-chr10-22158971-1	chr10	22158871	22159071	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	362.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	6.86	2.26	0.57	5.63	1.23	6.59	4.65	5.78	3.93	1.51	4.02	4.07
Merged-chr7-75366636-1	chr7	75366536	75366736	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57374.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	7.67	3.27	4.56	2.41	0.82	7.84	3.99	5.97	0.98	0.0	1.51	0.63
Merged-chr17-83862379-3	chr17	83862269	83862469	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7951.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	4.44	5.79	7.99	9.65	9.82	8.15	16.28	5.64	8.85	14.56	11.05	11.28
Merged-chr18-77713352-2	chr18	77713236	77713436	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027978)	promoter-TSS (NR_027978)	674.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	3.63	9.06	12.55	3.22	4.5	5.02	4.98	6.5	10.23	3.51	5.02	5.33
Merged-chr2-32167157-1	chr2	32167057	32167257	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	16009.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	7.67	3.52	2.28	4.83	6.95	5.02	5.98	7.74	3.93	3.51	2.01	1.88
Merged-chr16-36703942-1	chr16	36703842	36704042	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	9964.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.27	5.53	2.28	0.8	7.77	4.39	5.65	3.2	10.23	7.03	4.02	2.19
Merged-chrX-93286394-1	chrX	93286294	93286494	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001305940)	promoter-TSS (NM_001305940)	-113.0	NM_007492	11878.0	Mm.275547	NM_007492	ENSMUSG00000035277	Arx	Arx1	aristaless related homeobox	protein-coding	2.02	5.03	2.28	4.02	4.5	2.82	4.65	2.92	6.88	9.54	9.04	4.39
Merged-chr8-36820779-1	chr8	36820679	36820879	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-87725.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.81	1.01	0.0	4.83	2.05	4.08	4.65	7.12	0.39	0.5	10.05	1.88
Merged-chr13-45388309-2	chr13	45388205	45388405	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1437.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	21.0	5.79	6.85	4.42	12.68	17.87	5.31	3.31	9.44	12.05	6.53	3.76
Merged-chr2-80357174-2	chr2	80357083	80357283	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34181.0	NR_040370	100503167.0	Mm.265892	NR_040370		Gm13752	-	predicted gene 13752	ncRNA	5.25	1.51	10.84	8.04	7.36	10.66	16.61	8.78	6.1	4.52	3.52	6.27
Merged-chr8-109614711-2	chr8	109614602	109614802	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001286454, exon 1 of 33)	exon (NM_001286454, exon 1 of 33)	185.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	8.88	4.02	0.57	1.61	2.45	10.66	5.31	5.27	9.24	8.03	11.05	1.57
Merged-chr11-117883062-1	chr11	117882962	117883162	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9536.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.85	3.52	1.14	5.63	5.32	1.25	5.98	5.47	2.36	3.01	2.01	5.95
Merged-chr13-118403694-1	chr13	118403594	118403794	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16442.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	1.62	1.26	0.0	0.8	3.27	8.78	1.33	0.7	10.82	8.54	14.07	2.19
Merged-chr3-116861280-1	chr3	116861180	116861380	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009146)	promoter-TSS (NM_009146)	-400.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	2.02	5.28	0.0	1.21	0.0	7.21	3.65	1.49	6.69	11.55	10.55	10.96
Merged-chr5-123626839-1	chr5	123626739	123626939	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359223, intron 10 of 19)	intron (NM_001359223, intron 10 of 19)	-53824.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.04	3.27	7.42	0.0	2.05	6.9	2.99	3.42	10.42	3.51	12.06	5.33
Merged-chr11-3203206-5	chr11	3203106	3203306	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166549, exon 1 of 18)	5' UTR (NM_001166549, exon 1 of 18)	187.0	NM_001166549	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	6.46	2.52	3.42	1.21	4.5	5.96	0.66	3.17	8.26	8.03	7.03	10.96
Merged-chr15-62137953-1	chr15	62137853	62138053	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81498.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.85	5.28	7.42	5.23	6.95	3.14	5.31	8.05	5.11	0.0	5.53	0.31
Merged-chr19-12564406-3	chr19	12564325	12564525	+	696.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-9085.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	20.19	11.32	7.99	10.86	8.18	11.92	8.64	9.87	19.28	11.05	9.55	4.7
Merged-chr10-67315330-3	chr10	67315232	67315432	+	696.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30051.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	13.73	6.54	6.85	12.07	8.59	6.27	5.98	6.76	9.24	9.04	4.02	12.53
Merged-chr13-112751896-3	chr13	112751763	112751963	+	696.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48914.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.63	9.06	5.7	8.45	5.32	0.31	4.98	4.77	4.13	4.02	5.02	3.76
Merged-chr14-25749353-2	chr14	25749262	25749462	+	696.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	19494.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.44	8.8	3.42	10.46	8.18	18.19	7.31	7.57	13.96	7.03	6.53	2.82
Merged-chr11-118490917-3	chr11	118490805	118491005	+	696.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285436, exon 14 of 14)	3' UTR (NM_001285436, exon 14 of 14)	14073.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.63	9.56	11.98	7.24	15.96	12.54	7.31	5.41	10.42	9.54	7.03	8.77
Merged-chr16-44172438-3	chr16	44172313	44172513	+	696.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-984.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	10.5	4.78	6.28	4.83	18.0	8.78	1.33	5.83	9.44	11.55	12.06	12.22
Merged-chr18-26864982-2	chr18	26864862	26865062	+	696.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1110805.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.85	4.53	4.56	3.62	4.5	2.82	8.97	4.35	11.01	9.04	11.56	7.52
Merged-chr16-11460416-3	chr16	11460333	11460533	+	696.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	54785.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.23	6.54	6.85	6.44	11.45	20.38	20.26	26.41	12.59	16.57	8.54	4.07
Merged-chr1-46078086-1	chr1	46077986	46078186	+	696.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160386, intron 2 of 65)	MTD|LTR|ERVL-MaLR	11348.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.4	3.02	7.99	3.62	6.55	5.96	3.99	3.87	13.37	10.54	15.07	7.83
Merged-chr18-78805222-3	chr18	78805114	78805314	+	696.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	-208264.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	8.48	12.07	6.85	7.64	12.68	10.35	10.3	5.3	16.52	13.56	7.54	7.52
Merged-chr15-13391132-1	chr15	13391032	13391232	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-217457.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.04	2.77	1.14	2.01	8.18	8.15	6.64	5.44	9.44	9.54	3.01	6.27
Merged-chr13-24281139-2	chr13	24281066	24281266	+	696.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311122)	promoter-TSS (NM_001311122)	-376.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	14.54	6.04	6.28	7.24	7.36	6.27	2.66	7.43	2.75	4.52	3.01	5.95
Merged-chr1-155084644-2	chr1	155084536	155084736	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1372.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.83	1.01	2.28	1.61	3.27	9.72	1.66	4.74	13.96	11.05	12.56	6.27
Merged-chr19-33366794-2	chr19	33366696	33366896	+	696.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	25499.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	11.71	7.55	5.7	3.22	4.91	5.96	3.99	7.04	7.28	3.01	6.53	4.39
Merged-chr11-20446058-2	chr11	20445974	20446174	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97179.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.85	4.02	10.27	5.23	7.36	7.21	8.97	6.59	10.82	10.04	10.05	4.7
Merged-chrX-101132409-2	chrX	101132275	101132475	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110311, intron 4 of 5)	L1M8|LINE|L1	-46970.0	NM_007515	11989.0	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	1.62	4.53	2.28	10.46	13.91	11.6	3.65	10.32	3.74	15.57	6.03	11.59
Merged-chr4-9610192-3	chr4	9610078	9610278	+	696.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 4 of 22)	intron (NM_001290367, intron 4 of 22)	33539.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.48	7.04	12.55	6.84	6.95	13.8	1.99	8.8	17.7	14.56	14.07	10.34
Merged-chr13-55600828-3	chr13	55600728	55600928	+	696.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	932.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	12.11	3.02	10.27	8.85	9.41	16.93	6.98	12.84	16.13	12.05	10.05	5.95
Merged-chr4-138065648-1	chr4	138065548	138065748	+	696.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	67823.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	8.48	3.02	1.71	1.21	13.5	10.03	1.33	5.07	5.11	11.55	4.02	4.39
Merged-chr4-149980125-3	chr4	149980019	149980219	+	696.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173371, exon 5 of 5)	3' UTR (NM_173371, exon 5 of 5)	23117.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	16.15	5.03	8.56	5.23	12.27	10.98	12.29	5.07	8.06	7.53	4.52	6.58
Merged-chr11-51681752-3	chr11	51681613	51681813	+	696.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6921.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	4.04	7.8	10.27	14.08	7.77	8.47	4.32	6.0	6.69	16.07	5.02	5.01
Merged-chr5-92374276-2	chr5	92374184	92374384	+	696.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-10988.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	9.29	9.06	5.13	8.45	6.14	7.84	8.3	11.33	12.0	7.03	11.05	6.89
Merged-chr3-88632375-2	chr3	88632293	88632493	+	696.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198912, intron 4 of 21)	intron (NM_001198912, intron 4 of 21)	10999.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.63	6.54	7.42	4.83	7.77	7.21	2.66	9.28	10.03	12.05	8.54	5.33
Merged-chr1-132333780-2	chr1	132333687	132333887	+	696.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028778)	TTS (NM_028778)	17662.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	6.46	7.04	7.99	2.01	6.14	4.7	7.64	6.31	15.34	11.55	12.06	4.7
Merged-chr12-112665633-2	chr12	112665519	112665719	+	696.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	-6268.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	4.04	2.52	6.85	4.83	6.14	7.53	11.63	13.51	7.87	6.03	10.05	8.14
Merged-chr10-118609317-2	chr10	118609223	118609423	+	696.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52798.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	4.85	7.29	1.14	6.03	9.41	11.29	4.98	12.36	10.62	9.04	9.55	3.45
Merged-chr19-46132380-2	chr19	46132297	46132497	+	696.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007703, intron 1 of 3)	intron (NM_007703, intron 1 of 3)	498.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	7.27	3.77	2.28	6.03	9.82	10.66	4.65	10.07	4.72	6.03	14.07	7.21
Merged-chr11-53520739-3	chr11	53520621	53520821	+	696.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	533.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	10.09	8.3	6.28	4.02	8.59	9.72	7.64	7.93	7.67	11.05	12.56	7.52
Merged-chr2-66101175-3	chr2	66101078	66101278	+	696.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015736, intron 3 of 10)	intron (NM_015736, intron 3 of 10)	23615.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.46	6.04	5.13	6.84	12.68	5.02	6.98	19.18	8.26	6.53	15.07	10.96
Merged-chr5-30839996-3	chr5	30839895	30840095	+	696.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-21812.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	8.88	6.79	4.56	5.63	8.59	19.13	8.64	11.3	6.49	11.55	13.57	8.77
Merged-chr3-131237972-3	chr3	131237875	131238075	+	696.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	34126.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	5.25	7.04	7.42	6.03	4.09	6.59	6.98	8.13	7.28	7.03	8.04	4.07
Merged-chr10-34111440-1	chr10	34111340	34111540	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14921.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	4.04	1.01	4.56	2.41	4.91	0.94	4.32	7.15	1.38	0.5	0.0	0.63
Merged-chr7-63997260-1	chr7	63997160	63997360	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58345.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	4.02	0.0	0.4	6.14	3.45	9.3	6.67	5.31	3.51	5.53	5.64
Merged-chr16-3743122-2	chr16	3743010	3743210	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-989.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	2.01	4.56	3.22	9.82	15.99	2.66	5.66	8.26	13.05	9.04	10.65
Merged-chr3-88552148-1	chr3	88552048	88552248	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001362368)	TTS (NM_001362368)	803.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	5.25	2.52	2.28	4.02	9.41	10.03	1.33	5.83	6.1	0.5	10.55	5.01
Merged-chr7-144923146-1	chr7	144923046	144923246	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357868, intron 4 of 4)	intron (NM_001357868, intron 4 of 4)	8046.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	4.85	4.78	1.14	8.45	5.73	7.84	2.33	6.7	4.13	10.04	5.02	9.71
Merged-chr7-99537187-2	chr7	99537091	99537291	+	696.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	MIRb|SINE|MIR	1705.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	1.62	7.29	8.56	2.01	3.68	6.9	0.0	7.29	5.9	8.54	3.01	5.64
Merged-chr4-66788398-1	chr4	66788298	66788498	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39153.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.63	4.28	1.71	6.03	4.5	1.25	5.31	6.03	8.26	3.01	7.54	3.45
Merged-chr1-139007704-2	chr1	139007617	139007817	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30060.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	6.46	2.77	2.85	3.22	9.82	8.15	10.3	11.55	8.85	11.55	10.05	2.51
Merged-chr2-59670498-1	chr2	59670398	59670598	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23729.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	2.42	2.26	6.28	4.02	6.14	6.59	1.0	4.85	4.92	2.01	1.51	3.45
Merged-chr4-28813861-1	chr4	28813761	28813961	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010141, intron 1 of 16)	CpG	716.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	5.65	3.27	3.99	9.25	4.91	5.02	10.96	6.81	6.69	8.54	7.54	14.1
Merged-chr10-93292023-1	chr10	93291923	93292123	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	19136.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.44	2.26	5.13	2.41	9.82	5.96	1.0	5.64	2.36	1.0	1.51	1.57
Merged-chr10-18139101-1	chr10	18139001	18139201	+	696.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 17 of 20)	intron (NM_001195036, intron 17 of 20)	71789.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.41	1.51	8.04	15.04
Merged-chr4-25715180-1	chr4	25715080	25715280	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010243, intron 1 of 2)	MTD|LTR|ERVL-MaLR	84823.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.0	2.01	0.0	0.4	7.36	5.64	1.66	7.15	1.18	1.51	0.5	0.63
Merged-chr18-56439956-1	chr18	56439856	56440056	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	7824.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	7.67	3.52	7.42	5.23	2.05	7.21	9.3	6.42	8.65	7.03	6.53	8.14
Merged-chr14-73389272-3	chr14	73389177	73389377	+	696.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3988.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	10.5	7.04	8.56	10.46	13.5	9.72	5.98	14.69	8.65	10.54	8.04	8.46
Merged-chr3-100920847-3	chr3	100920746	100920946	+	696.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1647.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	11.71	7.29	5.13	8.45	5.32	9.41	10.3	8.83	12.98	7.53	5.53	6.58
Merged-chr3-27938617-3	chr3	27938515	27938715	+	696.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164056)	promoter-TSS (NM_001164056)	-65.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	8.88	5.53	7.42	6.84	8.59	6.9	5.98	10.43	4.33	9.04	15.07	8.46
Merged-chr7-128690330-3	chr7	128690229	128690429	+	696.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346517, intron 1 of 5)	intron (NM_001346517, intron 1 of 5)	1459.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	8.08	7.55	9.7	9.65	12.27	15.37	5.65	7.91	11.01	12.55	9.04	7.21
Merged-chr18-38946574-2	chr18	38946460	38946660	+	696.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	L1M4|LINE|L1	-27861.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.63	3.27	3.42	7.64	8.59	8.47	8.97	12.08	7.28	9.54	10.55	5.33
Merged-chr5-97959828-2	chr5	97959728	97959928	+	696.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133738, intron 12 of 16)	MLT1E2|LTR|ERVL-MaLR	71134.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	12.52	8.05	5.7	5.63	10.23	7.53	10.63	12.11	3.15	1.51	5.02	1.88
Merged-chr13-62620916-1	chr13	62620816	62621016	+	696.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173381, intron 1 of 2)	intron (NM_173381, intron 1 of 2)	3266.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	4.44	1.51	3.99	0.4	0.0	2.2	2.33	2.05	21.05	13.05	17.59	8.14
Merged-chr17-23969460-3	chr17	23969364	23969564	+	696.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	5766.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	7.67	7.04	10.27	4.83	4.5	9.41	9.63	6.64	14.75	7.03	13.06	4.7
Merged-chr2-145870386-2	chr2	145870293	145870493	+	696.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-32848.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.06	9.31	10.84	10.05	7.77	10.66	5.98	12.48	1.57	0.0	4.02	5.01
Merged-chr9-108345851-2	chr9	108345760	108345960	+	696.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1971.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	9.69	9.06	3.99	6.44	9.0	7.84	1.0	0.5	7.08	4.02	1.0	2.51
Merged-chr7-65486419-2	chr7	65486337	65486537	+	696.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95594.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	8.48	5.28	6.28	8.04	9.41	8.15	1.99	8.36	2.95	4.02	4.02	6.58
Merged-chr11-77355201-2	chr11	77355101	77355301	+	696.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	6921.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	8.88	7.29	10.27	3.22	7.36	5.96	4.65	8.05	4.52	6.53	9.04	3.76
Merged-chr15-53724351-3	chr15	53724256	53724456	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-110077.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	3.63	9.56	10.27	2.82	7.77	0.0	3.65	7.88	8.06	4.02	3.52	8.14
Merged-chr13-92930333-1	chr13	92930233	92930433	+	696.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85546.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	4.44	2.26	5.7	1.21	2.45	3.14	1.99	0.62	12.98	13.05	8.04	1.25
Merged-chr18-62971388-3	chr18	62971276	62971476	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6540.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	5.65	7.04	9.13	1.61	20.05	6.9	1.66	8.5	14.95	14.06	13.57	5.95
Merged-chr15-27213110-1	chr15	27213010	27213210	+	696.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-253567.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.4	0.0	3.42	3.22	6.55	6.59	6.31	10.18	3.15	4.02	9.55	7.52
Merged-chr15-67175426-3	chr15	67175362	67175562	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	1420.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.02	4.02	6.85	1.61	2.86	2.51	1.66	3.62	2.36	3.01	4.02	6.58
Merged-chr3-65991189-1	chr3	65991089	65991289	+	696.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32940.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.21	3.02	0.57	1.61	10.64	5.96	6.64	4.68	8.85	8.54	5.53	3.13
Merged-chr11-78347469-1	chr11	78347369	78347569	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001313985, intron 2 of 4)	intron (NM_001313985, intron 2 of 4)	759.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	10.5	7.29	15.97	4.02	5.32	5.64	3.32	3.22	4.52	6.53	4.52	3.76
Merged-chr17-15065792-3	chr17	15065714	15065914	+	696.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12755.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	8.48	9.06	4.56	5.23	12.27	7.53	4.32	7.46	10.23	10.04	9.55	8.46
Merged-chr14-17435605-2	chr14	17435505	17435705	+	696.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-225355.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.42	1.76	6.85	10.46	11.45	5.33	5.65	9.08	12.78	14.06	16.58	5.64
Merged-chr3-107785440-3	chr3	107785338	107785538	+	696.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24969.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	10.5	10.82	5.13	6.44	6.95	5.33	6.98	6.25	14.36	7.53	10.55	4.07
Merged-chr2-127832709-3	chr2	127832602	127832802	+	696.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-843.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	9.29	4.78	9.13	2.82	9.0	15.68	1.33	7.63	9.83	11.05	14.07	14.72
Merged-chr15-95763133-3	chr15	95763046	95763246	+	696.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11555.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	6.06	9.56	9.13	9.65	13.91	9.41	7.64	7.91	13.57	12.05	12.56	5.95
Merged-chr17-88528076-2	chr17	88528035	88528235	+	696.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1989.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.81	8.3	10.84	4.02	6.14	0.63	3.99	5.1	6.29	5.52	6.03	4.39
Merged-chrX-153037624-1	chrX	153037524	153037724	+	696.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023788)	promoter-TSS (NM_023788)	-5.0	NR_040272	319781.0	Mm.92891	NR_040272	ENSMUSG00000085982	9530051G07Rik	-	RIKEN cDNA 9530051G07 gene	ncRNA	3.23	3.02	3.42	3.22	7.77	10.03	6.64	4.74	0.79	1.51	7.54	1.25
Merged-chr3-69976362-1	chr3	69976262	69976462	+	696.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-31251.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.0	1.51	0.0	0.0	2.45	4.39	3.32	1.65	11.6	13.56	22.61	8.14
Merged-chr14-122853042-2	chr14	122852926	122853126	+	696.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-60004.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	5.65	5.03	13.12	24.53	5.73	4.7	6.64	8.47	1.38	2.01	4.02	0.31
Merged-chr9-109021609-2	chr9	109021504	109021704	+	696.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16963.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	5.65	7.29	3.42	5.63	14.32	15.99	3.65	5.86	15.14	5.52	9.04	5.64
Merged-chr2-124712977-2	chr2	124712885	124713085	+	696.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	59404.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.08	2.52	7.99	2.82	11.05	7.53	8.3	3.25	12.39	14.56	12.56	4.07
Merged-chr6-119502163-2	chr6	119502083	119502283	+	696.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	22515.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	7.67	2.77	10.84	6.44	8.18	8.15	4.98	10.49	6.1	7.03	5.53	5.64
Merged-chr14-32801676-3	chr14	32801594	32801794	+	696.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15731.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	10.5	6.04	2.28	10.86	1.64	2.2	5.65	2.58	3.15	4.02	4.52	2.51
Merged-chr19-34772974-3	chr19	34772873	34773073	+	696.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25862.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	7.67	7.04	17.11	12.47	13.5	11.92	5.31	12.53	7.47	16.57	14.57	10.96
Merged-chr11-32682514-2	chr11	32682401	32682601	+	696.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	39946.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.65	6.04	7.42	4.83	4.91	7.84	11.29	9.73	6.49	10.04	3.52	6.27
Merged-chr4-53794469-2	chr4	53794403	53794603	+	696.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14798.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	4.85	4.78	2.85	12.07	1.64	3.14	5.98	12.39	2.95	0.5	4.02	3.76
Merged-chr12-99560803-2	chr12	99560697	99560897	+	696.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3044.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.23	3.27	6.28	2.82	6.95	7.84	5.31	6.31	16.92	10.54	9.04	6.27
Merged-chr9-7775209-2	chr9	7775133	7775333	+	696.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9157.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	4.44	7.04	9.13	11.26	8.18	5.02	4.32	5.41	8.65	10.54	10.05	4.39
Merged-chr14-60451812-2	chr14	60451722	60451922	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	73536.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	5.65	5.28	0.0	4.42	4.91	8.15	7.97	4.85	18.69	4.52	10.05	6.27
Merged-chr9-14203973-1	chr9	14203873	14204073	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72328.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	12.11	3.27	5.7	6.44	4.91	2.82	6.31	6.87	0.79	3.01	1.51	1.88
Merged-chr1-16203294-1	chr1	16203194	16203394	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97412.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.81	1.51	2.28	0.8	2.86	7.21	3.99	2.19	12.0	16.07	7.54	3.45
Merged-chr4-135306711-1	chr4	135306611	135306811	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-33951.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	2.83	5.28	0.0	6.84	9.41	5.64	1.0	4.01	7.87	3.01	13.57	9.71
Merged-chr14-105896285-3	chr14	105896171	105896371	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011897, intron 1 of 1)	CpG	548.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	1.21	6.54	3.42	8.45	7.36	2.82	10.96	5.69	3.34	4.02	3.52	7.83
Merged-chr12-105807705-1	chr12	105807605	105807805	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 6 of 21)	intron (NM_011112, intron 6 of 21)	23008.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	5.65	1.01	1.14	3.22	7.36	0.63	5.31	8.8	2.36	5.02	3.01	1.57
Merged-chr13-111687502-2	chr13	111687371	111687571	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172593, intron 1 of 12)	CpG	1293.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	10.09	5.03	7.42	6.84	8.59	9.09	5.65	6.64	2.56	5.52	9.04	8.46
Merged-chr19-43786443-1	chr19	43786343	43786543	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013806, intron 2 of 31)	intron (NM_013806, intron 2 of 31)	4135.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	2.42	4.53	0.0	1.61	1.64	3.14	7.64	1.96	8.65	8.54	14.07	4.7
Merged-chr10-96622476-1	chr10	96622376	96622576	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	5475.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.27	5.53	3.42	4.83	11.05	12.23	3.99	3.42	6.69	9.04	2.01	4.7
Merged-chr3-79627724-1	chr3	79627624	79627824	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025794, intron 1 of 12)	intron (NM_025794, intron 1 of 12)	1043.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.81	3.52	4.56	2.01	1.64	5.96	3.65	1.65	8.06	3.51	3.01	3.45
Merged-chr3-142499241-2	chr3	142499153	142499353	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	2319.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	1.21	11.07	5.7	5.23	7.36	9.72	0.66	2.19	13.37	12.05	5.53	4.7
Merged-chr5-33997289-1	chr5	33997189	33997389	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001985, intron 1 of 2)	CpG	1305.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	2.02	1.01	2.28	5.23	3.27	6.59	2.66	6.95	0.79	2.51	1.51	2.51
Merged-chr10-122799788-2	chr10	122799690	122799890	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	MTB|LTR|ERVL-MaLR	120475.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.42	3.77	2.85	4.02	10.23	8.15	10.3	4.99	7.28	3.51	4.02	8.14
Merged-chr2-32646556-1	chr2	32646456	32646656	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007932)	promoter-TSS (NM_007932)	-39.0	NM_007932	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	5.65	10.56	2.28	2.82	3.68	8.15	0.33	4.15	6.49	2.51	7.54	4.07
Merged-chr4-44113899-1	chr4	44113799	44113999	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7994.0	NR_040414	623796.0	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	-	prothymosin alpha pseudogene	pseudo	2.02	3.02	2.28	4.42	2.45	4.7	6.98	5.02	6.29	3.51	7.03	3.13
Merged-chr12-70129293-1	chr12	70129193	70129393	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-17258.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	3.23	4.28	2.28	2.41	4.5	5.96	4.98	4.4	4.52	5.02	6.53	4.7
Merged-chr10-67210112-2	chr10	67210011	67210211	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	MTC|LTR|ERVL-MaLR	24361.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	8.88	1.76	0.57	4.02	1.64	5.02	2.99	4.6	11.21	5.02	6.03	9.71
Merged-chr2-158361213-1	chr2	158361113	158361313	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015463, intron 1 of 5)	intron (NR_015463, intron 1 of 5)	296.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	4.44	5.28	2.28	5.23	7.36	1.88	2.99	4.91	5.31	7.53	7.54	5.01
Merged-chr4-86575022-1	chr4	86574922	86575122	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-651.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	4.04	2.52	7.99	5.23	4.91	9.41	2.66	5.78	6.49	5.52	6.03	4.07
Merged-chr2-160603530-2	chr2	160603413	160603613	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42384.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	6.86	8.55	3.99	9.25	5.73	3.76	7.97	9.93	2.16	5.52	5.53	3.13
Merged-chr1-172078158-1	chr1	172078058	172078258	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021607, intron 2 of 16)	intron (NM_021607, intron 2 of 16)	-4371.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	2.42	1.51	1.71	0.8	8.18	5.96	6.64	6.73	1.97	0.0	2.51	1.25
Merged-chr5-142376263-3	chr5	142376166	142376366	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25231.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	10.09	5.28	2.85	10.46	20.86	8.47	6.31	13.77	12.78	10.04	17.08	7.83
Merged-chr9-52229847-1	chr9	52229747	52229947	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61736.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	5.25	5.79	3.42	8.45	8.18	6.59	2.33	6.59	3.34	0.0	3.52	1.88
Merged-chr3-81961515-1	chr3	81961415	81961615	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019911, intron 9 of 11)	intron (NM_019911, intron 9 of 11)	14213.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	5.65	0.0	3.42	2.41	0.41	0.0	1.33	1.12	7.28	15.57	15.58	9.4
Merged-chr7-72669291-1	chr7	72669191	72669391	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-362696.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	1.51	1.14	1.21	3.68	1.25	5.31	8.52	0.79	1.0	0.0	0.63
Merged-chr8-39006771-1	chr8	39006671	39006871	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357305, intron 1 of 8)	intron (NM_001357305, intron 1 of 8)	926.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	2.42	3.52	10.84	8.04	4.91	1.88	4.32	7.12	5.31	7.53	7.54	2.82
Merged-chr11-31787593-1	chr11	31787493	31787693	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36954.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.81	2.01	1.14	0.0	6.95	1.88	4.32	7.93	1.57	5.52	3.01	1.25
Merged-chr6-128411255-2	chr6	128411159	128411359	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133927, intron 10 of 11)	B3|SINE|B2	11493.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	2.83	4.78	2.28	5.63	7.77	2.82	2.66	4.79	11.01	11.55	12.56	8.46
Merged-chr11-77381782-1	chr11	77381682	77381882	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	33502.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	7.27	8.05	6.28	2.41	4.91	14.42	6.64	2.55	12.39	7.53	10.55	0.94
Merged-chr11-71996127-3	chr11	71996006	71996206	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41403.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	9.29	7.8	3.99	12.07	6.14	8.78	7.31	12.87	7.08	4.02	10.05	3.76
Merged-chr2-5605987-1	chr2	5605887	5606087	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	70059.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.04	4.02	6.85	7.24	9.82	10.03	5.31	5.3	0.39	2.51	2.51	2.19
Merged-chr16-91778150-3	chr16	91778057	91778257	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	48786.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	7.27	4.02	10.84	11.26	4.09	11.92	5.31	13.18	8.26	3.51	10.05	11.28
Merged-chr1-93636386-1	chr1	93636286	93636486	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-659.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	6.06	2.52	2.28	1.21	2.86	3.45	3.99	3.0	9.24	12.05	13.06	11.9
Merged-chr13-81134608-2	chr13	81134505	81134705	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	RMER10A|LTR|ERVL	170531.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.83	5.79	0.57	6.44	11.05	8.78	5.31	8.58	5.51	8.54	4.52	8.46
Merged-chr18-38602977-1	chr18	38602877	38603077	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1709.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	3.23	4.28	3.42	2.82	0.82	5.96	1.99	2.38	2.75	0.5	2.01	1.57
Merged-chr11-69060335-2	chr11	69060223	69060423	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028005, exon 1 of 1)	exon (NM_028005, exon 1 of 1)	548.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	7.27	7.29	7.42	3.22	4.91	7.84	2.99	3.93	12.59	14.06	6.03	8.14
Merged-chr11-113777333-1	chr11	113777233	113777433	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25518.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	1.21	6.54	1.14	1.61	2.86	10.98	3.99	6.62	6.88	6.03	7.54	8.46
Merged-chr2-30801737-1	chr2	30801637	30801837	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	0.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	2.02	7.55	5.13	2.01	11.86	2.51	4.65	7.79	2.56	6.53	4.52	4.39
Merged-chr5-150593222-1	chr5	150593122	150593322	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	8.48	5.03	10.27	4.42	4.09	6.9	6.64	5.86	7.67	13.05	7.54	4.7
Merged-chr14-44086775-1	chr14	44086675	44086875	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15879.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	5.65	3.52	6.85	10.46	3.68	5.02	6.31	3.5	10.42	10.04	14.07	1.57
Merged-chr2-122301704-1	chr2	122301604	122301804	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025777, exon 5 of 6)	exon (NM_025777, exon 5 of 6)	2804.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	1.62	3.02	1.14	6.84	10.64	3.45	4.98	6.98	8.06	2.01	5.53	4.07
Merged-chr6-138153216-1	chr6	138153116	138153316	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154598, intron 2 of 2)	intron (NR_154598, intron 2 of 2)	11629.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	1.62	2.52	6.85	2.82	3.27	7.21	6.64	7.12	2.75	2.51	4.02	0.63
Merged-chrX-36114943-1	chrX	36114843	36115043	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	intron (NM_133990, intron 1 of 10)	2835.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	8.88	5.03	1.71	6.44	4.5	5.96	2.99	6.67	5.7	9.54	6.53	4.07
Merged-chr11-106702756-2	chr11	106702650	106702850	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	12531.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.44	4.53	5.13	2.41	3.27	10.03	0.33	5.3	10.82	10.54	13.57	4.07
Merged-chr6-17628442-3	chr6	17628336	17628536	+	695.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-8574.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	9.29	4.78	8.56	8.85	22.5	9.09	7.31	7.82	13.96	15.06	16.58	5.01
Merged-chr11-78037912-2	chr11	78037818	78038018	+	695.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040403)	promoter-TSS (NM_001040403)	-23.0	NM_001040403	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	14.94	3.27	8.56	8.45	15.96	10.66	5.98	6.31	9.05	7.53	7.03	6.58
Merged-chr4-134005132-3	chr4	134005031	134005231	+	695.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4267.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	8.88	15.34	17.11	10.05	13.91	15.05	13.29	1.46	9.83	9.54	10.05	6.27
Merged-chr14-70078757-3	chr14	70078679	70078879	+	695.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	984.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	16.56	8.05	4.56	10.05	11.05	8.78	2.33	7.74	7.08	8.03	8.04	6.27
Merged-chr5-31054156-3	chr5	31054082	31054282	+	695.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-598.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	11.71	5.79	7.42	3.22	10.23	4.08	3.99	6.14	10.03	10.54	9.55	3.76
Merged-chr12-38904669-2	chr12	38904565	38904765	+	695.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120954.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.46	3.27	6.28	15.28	11.86	11.6	13.62	27.08	7.08	8.54	14.57	5.33
Merged-chr5-21213095-3	chr5	21213022	21213222	+	695.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 5 of 26)	MTD|LTR|ERVL-MaLR	26855.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	8.08	6.29	13.69	9.65	11.45	8.15	13.95	11.02	10.42	9.04	11.05	6.58
Merged-chr10-77033896-3	chr10	77033800	77034000	+	695.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	688.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	10.9	6.79	3.99	4.42	7.77	15.37	3.65	8.13	8.65	12.05	6.03	4.07
Merged-chr12-16830054-1	chr12	16829954	16830154	+	695.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19089.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	2.02	3.27	4.56	0.8	7.36	12.23	9.63	4.99	1.97	1.0	3.01	1.57
Merged-chr11-118208383-2	chr11	118208267	118208467	+	695.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4375.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	9.69	9.81	18.25	2.41	1.64	10.98	8.64	4.96	6.88	4.02	5.02	5.33
Merged-chr17-86142483-1	chr17	86142383	86142583	+	695.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030133, intron 1 of 20)	intron (NM_030133, intron 1 of 20)	2692.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	2.83	5.53	3.42	0.8	4.09	6.59	3.99	6.93	3.34	3.51	2.01	3.76
Merged-chr1-89466494-1	chr1	89466394	89466594	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	MTEa|LTR|ERVL-MaLR	11683.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	1.21	1.76	1.14	3.22	12.27	7.53	7.31	7.07	6.29	2.51	4.52	2.82
Merged-chr6-125444090-1	chr6	125443990	125444190	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	50670.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.23	2.77	3.42	1.21	6.95	14.11	8.97	3.95	3.15	1.0	2.01	0.0
Merged-chr19-21275874-3	chr19	21275724	21275924	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	(CATA)n|Simple_repeat|Simple_repeat	3546.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	6.86	3.77	3.99	14.88	4.5	5.33	5.98	3.53	5.7	6.03	6.53	9.4
Merged-chr5-135144414-2	chr5	135144298	135144498	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5313.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	6.86	6.29	6.85	3.22	9.0	3.76	8.64	9.84	8.46	5.52	10.55	8.14
Merged-chr3-15345779-3	chr3	15345659	15345859	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13457.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	9.69	6.79	11.98	5.63	15.14	15.05	17.27	15.64	9.83	14.56	13.06	3.76
Merged-chr15-8098075-3	chr15	8097954	8098154	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358788, intron 2 of 3)	B3|SINE|B2	1155.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	8.48	10.31	4.56	7.24	6.14	14.42	4.32	4.12	18.49	15.06	18.09	10.96
Merged-chr11-98829592-3	chr11	98829498	98829698	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138660, intron 11 of 13)	intron (NM_138660, intron 11 of 13)	-7187.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	11.71	8.8	17.68	20.91	11.45	7.53	5.31	10.26	11.41	8.03	8.54	6.27
Merged-chr5-121260212-1	chr5	121260112	121260312	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 4 of 75)	intron (NM_181421, intron 4 of 75)	39993.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	4.85	7.04	7.99	10.05	10.23	10.98	8.64	5.41	3.74	5.02	4.02	2.19
Merged-chr13-37432955-1	chr13	37432855	37433055	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87610.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.86	3.02	1.14	3.22	7.36	5.96	2.99	5.16	0.79	7.53	6.03	4.07
Merged-chr3-135670744-2	chr3	135670624	135670824	+	695.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	20823.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.63	6.79	15.97	3.22	5.32	6.59	4.98	4.57	12.78	11.55	13.06	15.98
Merged-chr13-112673383-2	chr13	112673283	112673483	+	695.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	12617.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.65	7.55	17.68	9.25	2.86	1.57	1.33	2.92	23.21	6.03	15.58	16.92
Merged-chr10-99380273-2	chr10	99380188	99380388	+	695.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117057.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	1.62	9.06	4.56	10.05	6.95	10.66	14.95	4.18	6.69	2.01	7.54	2.82
Merged-chr14-70055364-2	chr14	70055279	70055479	+	695.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-22066.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	2.83	2.52	3.42	4.02	11.86	6.9	4.98	2.72	10.62	10.54	5.53	13.78
Merged-chr4-143155255-2	chr4	143155159	143155359	+	695.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-19097.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	10.09	8.3	5.13	12.47	7.77	7.84	10.63	9.73	8.65	6.03	7.03	5.64
Merged-chr10-97712828-2	chr10	97712718	97712918	+	695.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033537, intron 4 of 4)	intron (NR_033537, intron 4 of 4)	-1954.0	NR_130993	78127.0	Mm.376175	NR_130992	ENSMUSG00000112497	4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	8.08	4.78	10.27	7.64	13.91	10.66	4.65	7.26	8.65	9.54	12.56	5.33
Merged-chr11-78600697-3	chr11	78600579	78600779	+	695.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49944.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	7.27	4.53	15.4	8.04	11.86	8.47	9.3	5.78	10.42	13.56	8.04	6.89
Merged-chr7-145281741-1	chr7	145281641	145281841	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	2270.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	5.03	1.71	7.24	4.09	1.57	4.65	9.59	9.64	1.51	2.01	5.01
Merged-chr7-101571077-3	chr7	101570979	101571179	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	10082.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.25	3.77	7.99	13.27	8.59	17.56	8.97	8.41	13.57	11.05	14.07	12.84
Merged-chr7-139412630-2	chr7	139412518	139412718	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	12124.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	5.25	3.27	10.84	13.67	4.5	8.15	3.99	12.73	3.54	3.01	12.06	4.39
Merged-chr9-82980534-2	chr9	82980439	82980639	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5050.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	1.62	3.52	6.28	2.41	7.77	2.51	1.66	5.21	11.01	6.53	7.54	8.46
Merged-chr13-37855200-1	chr13	37855100	37855300	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27807.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.62	5.03	5.7	8.04	6.55	4.39	2.33	8.58	6.88	11.05	1.0	1.88
Merged-chr9-99385221-1	chr9	99385121	99385321	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008624)	TTS (NM_008624)	-26691.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	2.83	5.28	6.28	6.44	8.59	3.76	1.99	4.88	5.7	6.03	3.01	3.13
Merged-chr2-114624867-2	chr2	114624761	114624961	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	30103.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	2.83	7.29	8.56	8.45	5.32	6.27	8.3	8.86	4.72	8.03	15.07	5.33
Merged-chr8-33698328-1	chr8	33698228	33698428	+	695.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010344)	TTS (NM_010344)	-33586.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	1.62	0.0	0.0	0.0	0.82	0.0	0.0	0.56	11.21	5.02	10.55	14.72
Merged-chr14-54365430-2	chr14	54365317	54365517	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026936, intron 3 of 9)	intron (NM_026936, intron 3 of 9)	4576.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	8.08	6.29	7.99	8.45	13.09	7.53	3.65	10.32	4.52	4.52	7.03	3.76
Merged-chr8-83896060-2	chr8	83895950	83896150	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4048.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	7.27	8.3	10.84	2.82	6.14	7.53	2.66	6.17	11.41	1.0	5.53	5.64
Merged-chr17-88403511-1	chr17	88403411	88403611	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37193.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	2.42	4.53	2.28	8.85	4.5	11.6	4.98	6.62	1.38	2.01	3.01	4.07
Merged-chr17-40824774-1	chr17	40824674	40824874	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011269, intron 1 of 9)	Lx8|LINE|L1	13625.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	4.04	7.04	5.13	2.41	3.27	5.96	6.64	5.41	7.87	11.55	9.04	5.95
Merged-chr19-4989194-2	chr19	4989074	4989274	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153553, intron 1 of 7)	intron (NM_153553, intron 1 of 7)	797.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	7.67	3.77	7.42	4.83	4.09	8.47	2.99	6.39	12.59	13.05	12.06	10.65
Merged-chr7-3692118-3	chr7	3692055	3692255	+	695.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029934, intron 1 of 7)	intron (NM_029934, intron 1 of 7)	1370.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	8.48	7.29	13.69	4.02	4.91	6.27	3.65	3.76	16.72	5.52	7.03	10.65
Merged-chr8-68999501-2	chr8	68999399	68999599	+	695.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-89237.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	7.67	15.09	5.13	6.84	10.64	21.95	3.99	4.74	19.67	11.55	11.56	10.96
Merged-chr7-79793015-4	chr7	79792979	79793179	+	695.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008588, exon 1 of 2)	exon (NM_008588, exon 1 of 2)	511.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	4.04	5.79	3.42	6.84	2.05	2.51	4.65	4.26	6.49	9.04	7.03	7.21
Merged-chr2-170401621-2	chr2	170401534	170401734	+	695.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029815, intron 4 of 12)	intron (NM_029815, intron 4 of 12)	26211.0	NM_001164369	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	16.15	3.77	6.85	8.85	9.0	10.66	3.32	7.21	10.03	13.05	3.01	9.4
Merged-chr13-48572365-3	chr13	48572261	48572461	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34089.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	6.86	5.03	8.56	10.05	3.68	4.7	2.66	4.43	15.34	12.55	10.05	4.39
Merged-chr15-98167766-3	chr15	98167666	98167866	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177716)	promoter-TSS (NM_177716)	-40.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	8.48	5.79	3.42	2.01	6.55	15.68	2.33	4.4	17.31	8.03	12.56	10.65
Merged-chr4-135292913-2	chr4	135292798	135292998	+	695.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20138.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.04	6.79	5.13	0.0	11.05	24.77	10.3	6.62	11.41	11.05	14.07	8.14
Merged-chr17-15813937-3	chr17	15813822	15814022	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	12664.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	7.67	6.04	5.13	22.12	9.82	2.82	13.95	19.93	8.85	9.04	8.54	3.45
Merged-chrX-10250695-3	chrX	10250589	10250789	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1616.0	NM_008769	18416.0	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	12.11	4.78	5.7	9.25	5.73	7.53	11.63	18.08	6.49	10.04	10.05	4.7
Merged-chr13-37880268-1	chr13	37880168	37880368	+	695.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-8166.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.46	6.79	4.56	2.01	7.77	6.9	1.99	7.12	5.11	8.54	4.52	5.64
Merged-chr17-17893506-3	chr17	17893433	17893633	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008039, exon 2 of 2)	exon (NM_008039, exon 2 of 2)	5709.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.63	7.55	7.42	8.45	11.86	6.27	7.97	4.49	9.05	6.53	7.03	8.46
Merged-chr9-20869386-2	chr9	20869282	20869482	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175687, exon 2 of 8)	exon (NM_175687, exon 2 of 8)	740.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	4.44	5.79	6.28	10.86	14.73	7.21	11.63	7.68	5.7	18.58	3.52	9.71
Merged-chr9-71757092-2	chr9	71756987	71757187	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026599, intron 1 of 18)	intron (NM_026599, intron 1 of 18)	14515.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	17.36	4.53	13.69	6.03	4.91	5.64	4.98	7.57	1.97	2.01	5.53	1.88
Merged-chr13-44939483-2	chr13	44939387	44939587	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62609.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	8.08	8.05	6.85	0.0	13.5	34.18	1.99	2.36	11.6	17.07	7.54	8.77
Merged-chr9-99109344-3	chr9	99109247	99109447	+	695.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30864.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	14.13	3.52	8.56	10.86	6.55	4.7	6.64	10.09	10.82	9.54	13.57	9.71
Merged-chr5-33822648-3	chr5	33822547	33822747	+	695.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20465.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	21.4	8.05	14.83	13.27	9.82	10.03	6.64	8.24	8.26	11.05	12.06	10.34
Merged-chr11-77497716-3	chr11	77497627	77497827	+	695.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	4315.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	10.09	4.28	7.99	9.65	11.86	9.72	3.32	7.82	12.39	7.03	3.01	7.52
Merged-chr17-34117960-2	chr17	34117849	34118049	+	695.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 2 of 12)	intron (NM_001204973, intron 2 of 12)	1951.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	2.42	4.28	9.7	2.01	3.27	8.15	2.33	5.24	8.26	10.54	4.52	8.77
Merged-chr4-156228874-2	chr4	156228778	156228978	+	695.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008233)	promoter-TSS (NM_001008233)	-336.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	1.62	4.28	11.41	3.22	6.14	4.39	9.63	6.03	29.7	17.07	14.57	7.83
Merged-chr2-84532466-2	chr2	84532338	84532538	+	695.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-25565.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.44	4.02	9.7	10.05	4.5	5.02	6.98	6.67	5.51	3.51	4.02	6.27
Merged-chr7-145026937-3	chr7	145026843	145027043	+	695.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87018.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	9.29	10.82	6.85	5.63	11.05	18.81	7.97	5.55	18.69	12.05	14.07	11.9
Merged-chr5-3461059-2	chr5	3460975	3461175	+	695.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82758.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	2.83	4.53	11.98	6.44	11.45	6.27	3.99	10.57	8.46	9.04	5.02	2.51
Merged-chr15-6581071-3	chr15	6580955	6581155	+	695.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	1208.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	9.69	6.79	9.13	4.02	5.73	14.74	10.96	5.66	13.37	9.54	12.06	3.76
Merged-chr6-127267025-3	chr6	127266938	127267138	+	695.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	40929.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	8.88	8.05	6.28	7.24	11.45	12.54	5.98	4.85	19.08	16.57	13.06	6.58
Merged-chr5-3509657-2	chr5	3509549	3509749	+	695.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	MIRb|SINE|MIR	-34184.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.23	6.29	4.56	1.61	10.64	23.2	5.98	6.67	10.03	10.54	20.1	7.83
Merged-chr15-79650751-2	chr15	79650670	79650870	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029407, intron 1 of 17)	B1F1|SINE|Alu	8186.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	14.13	7.8	9.13	4.02	7.36	8.47	7.31	8.92	26.36	11.05	14.07	10.02
Merged-chr6-66897371-1	chr6	66897271	66897471	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	480.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	1.62	3.77	2.28	3.62	6.14	5.96	2.99	7.26	6.88	4.52	9.55	3.45
Merged-chr17-28015171-1	chr17	28015071	28015271	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65413.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	3.63	3.27	3.42	3.22	6.95	6.59	8.64	6.31	3.93	4.02	4.02	3.45
Merged-chr15-97343058-1	chr15	97342958	97343158	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	MTD|LTR|ERVL-MaLR	-95771.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.63	2.77	2.28	4.02	8.18	5.33	8.97	6.79	2.75	0.5	2.01	2.51
Merged-chr7-25178372-2	chr7	25178255	25178455	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23286.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	6.06	3.02	8.56	0.8	4.5	8.78	4.65	2.05	6.49	6.03	4.52	3.13
Merged-chr4-150210538-2	chr4	150210437	150210637	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9402.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	8.88	7.55	8.56	5.63	7.77	8.78	9.63	7.07	1.57	0.0	0.0	5.33
Merged-chr14-70977393-1	chr14	70977293	70977493	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 7 of 7)	intron (NM_001302094, intron 7 of 7)	87286.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.85	4.53	9.13	11.26	8.18	5.96	5.31	7.77	1.18	5.02	3.52	1.88
Merged-chr16-14535898-1	chr16	14535798	14535998	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-26419.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	6.46	1.01	0.0	2.41	5.73	3.14	10.3	6.7	3.15	2.01	7.54	4.7
Merged-chr11-97279340-1	chr11	97279240	97279440	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008942, intron 1 of 22)	intron (NM_008942, intron 1 of 22)	1236.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	2.02	2.01	1.14	6.03	3.27	4.7	6.31	7.71	3.15	4.52	3.01	2.82
Merged-chr12-111429163-1	chr12	111429063	111429263	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 12 of 13)	intron (NM_001289487, intron 12 of 13)	11718.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	8.88	3.77	2.85	4.42	6.55	6.59	4.65	1.91	10.23	16.07	6.53	9.08
Merged-chr11-54068960-1	chr11	54068860	54069060	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	57.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	10.09	8.55	11.41	9.65	8.59	5.33	3.65	4.4	4.52	9.04	8.04	6.89
Merged-chr6-39384277-1	chr6	39384177	39384377	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011226, intron 2 of 3)	intron (NM_011226, intron 2 of 3)	2924.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	1.62	5.28	3.42	1.61	14.32	7.21	2.99	6.25	4.72	6.03	8.04	3.13
Merged-chr9-35280900-1	chr9	35280800	35281000	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040715)	promoter-TSS (NR_040715)	-205.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	14.54	7.04	1.14	7.64	2.05	4.39	2.99	2.69	3.34	5.52	2.01	4.07
Merged-chr5-140815224-1	chr5	140815124	140815324	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	15207.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	1.21	0.5	2.28	0.4	4.5	2.51	6.31	4.93	4.72	0.5	1.0	6.58
Merged-chr3-37648656-1	chr3	37648556	37648756	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8709.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	1.01	0.0	0.0	3.27	6.9	4.65	5.38	2.95	4.02	7.03	0.63
Merged-chr14-73160812-1	chr14	73160712	73160912	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033185, intron 5 of 15)	MTB_Mm|LTR|ERVL-MaLR	18027.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	2.02	2.26	6.85	3.62	3.27	4.08	3.32	2.41	11.6	2.01	10.55	5.95
Merged-chr13-101524460-1	chr13	101524360	101524560	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126880.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	8.08	1.51	7.99	4.42	5.73	3.76	3.32	6.59	4.52	1.51	8.04	4.7
Merged-chr9-100434473-1	chr9	100434373	100434573	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	52000.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	4.78	2.28	4.02	12.27	3.14	8.64	2.55	6.49	3.01	1.51	1.88
Merged-chr7-55920880-2	chr7	55920745	55920945	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 24 of 30)	MTC|LTR|ERVL-MaLR	41648.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.04	3.02	2.28	4.42	6.95	3.76	3.65	4.57	10.03	9.04	12.56	3.76
Merged-chr4-106708478-1	chr4	106708378	106708578	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001126487, exon 8 of 24)	exon (NM_001126487, exon 8 of 24)	19452.0	NM_001126487	381538.0	Mm.318201	NM_001126487	ENSMUSG00000047502	Mroh7	Gm1027|Heatr8	maestro heat-like repeat family member 7	protein-coding	6.86	4.02	2.28	0.0	1.64	2.2	4.32	2.58	2.16	2.01	4.02	2.51
Merged-chr17-63857285-1	chr17	63857185	63857385	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-6696.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	3.23	2.01	0.57	5.23	1.23	0.0	6.31	4.35	2.56	1.0	5.02	5.01
Merged-chr7-103762403-1	chr7	103762303	103762503	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5053.0	NM_147098	259102.0	Mm.377844	NM_147098	ENSMUSG00000050281	Olfr630	MOR17-1	olfactory receptor 630	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.41	8.03	8.04	5.33
Merged-chr4-101998731-2	chr4	101998624	101998824	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11884.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	3.63	2.52	0.0	6.44	6.55	7.21	3.99	5.13	11.21	8.03	11.56	6.89
Merged-chr7-30559224-2	chr7	30559091	30559291	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290569, intron 1 of 8)	intron (NM_001290569, intron 1 of 8)	455.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	10.9	5.03	2.28	4.83	14.73	8.15	1.99	2.55	9.05	9.04	10.05	5.01
Merged-chr1-55383379-1	chr1	55383279	55383479	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19910.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	6.06	4.28	0.57	5.23	1.64	4.7	3.65	4.85	3.15	3.51	5.53	1.57
Merged-chr5-34233079-2	chr5	34233000	34233200	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 5 of 12)	intron (NM_001015039, intron 5 of 12)	-45390.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	7.67	5.28	3.42	4.02	11.05	4.39	6.31	6.31	8.46	3.01	9.04	4.07
Merged-chr11-114995091-1	chr11	114994991	114995191	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-5205.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	4.85	1.76	1.71	3.62	4.91	13.17	11.63	6.31	0.39	8.54	6.53	2.82
Merged-chr12-86769214-3	chr12	86769108	86769308	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34839.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	8.88	3.77	5.13	11.26	5.73	4.08	4.98	6.39	5.11	18.08	11.05	8.14
Merged-chr10-40529875-1	chr10	40529775	40529975	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-40487.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	3.63	7.55	4.56	7.24	9.0	8.78	5.31	3.31	8.26	4.52	8.54	4.7
Merged-chr7-44824572-1	chr7	44824472	44824672	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-7914.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.81	4.53	0.57	9.65	4.09	8.15	2.99	6.17	4.13	1.51	1.0	6.89
Merged-chr2-91930307-1	chr2	91930207	91930407	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007699)	TTS (NM_007699)	1395.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	2.02	3.27	3.99	4.42	7.36	5.96	2.99	2.64	6.69	11.05	6.03	4.07
Merged-chr2-6452131-1	chr2	6452031	6452231	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	99395.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	2.42	3.77	9.7	1.61	4.09	1.88	7.31	5.72	3.74	7.03	6.03	5.95
Merged-chr5-140847404-1	chr5	140847304	140847504	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16973.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.04	6.54	2.85	7.24	5.73	7.84	2.99	6.11	5.7	3.01	3.52	5.33
Merged-chr3-69505297-1	chr3	69505197	69505397	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178726, intron 2 of 3)	intron (NM_178726, intron 2 of 3)	93663.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.06	5.79	5.13	2.82	3.27	4.08	4.98	7.85	5.7	3.51	10.55	6.89
Merged-chr7-28350162-1	chr7	28350062	28350262	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	-527.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	4.04	1.26	5.13	4.02	2.86	6.59	1.99	4.63	6.88	8.03	1.0	3.76
Merged-chr15-102987610-2	chr15	102987504	102987704	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2935.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	9.29	4.02	10.27	6.84	2.45	10.66	1.0	6.7	7.67	5.02	6.03	6.89
Merged-chr4-108620707-1	chr4	108620607	108620807	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	751.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	3.23	1.01	3.42	3.62	3.27	6.59	0.33	5.8	9.05	1.51	3.01	4.39
Merged-chr14-120476299-1	chr14	120476199	120476399	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2162.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	3.63	0.75	0.0	2.01	3.68	1.57	4.98	5.3	4.52	0.0	2.01	0.94
Merged-chr6-4955373-3	chr6	4955278	4955478	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	52058.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	9.69	5.03	2.85	12.07	11.86	6.27	9.3	10.63	8.26	3.51	10.05	9.4
Merged-chr15-95820735-1	chr15	95820635	95820835	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	9337.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	2.83	3.27	3.42	5.23	11.05	6.59	3.99	6.87	4.52	9.54	2.01	2.51
Merged-chr8-22881212-1	chr8	22881112	22881312	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	21673.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.4	0.5	3.42	0.4	0.82	1.88	5.98	6.22	2.95	3.51	8.54	4.7
Merged-chr8-104129970-1	chr8	104129870	104130070	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009868, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	-24097.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	4.44	1.51	2.28	6.44	7.77	3.14	5.65	10.29	1.97	3.51	8.04	3.76
Merged-chr6-40423966-1	chr6	40423866	40424066	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	12169.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	9.29	1.01	3.42	5.23	3.68	5.96	2.33	5.36	12.78	2.51	4.52	2.19
Merged-chr17-28080632-2	chr17	28080546	28080746	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013687)	promoter-TSS (NM_013687)	-7.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	6.86	4.28	2.28	2.82	5.73	8.15	9.63	6.62	13.57	15.06	10.05	10.96
Merged-chr2-37389781-1	chr2	37389681	37389881	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290642, exon 11 of 22)	exon (NM_001290642, exon 11 of 22)	10347.0	NR_028535	100217435.0		NR_028535		Snord90	MBII-295	small nucleolar RNA, C/D box 90	snoRNA	0.81	2.01	7.99	3.22	0.82	3.14	4.98	7.12	2.75	4.52	3.01	2.19
Merged-chr1-118569657-1	chr1	118569557	118569757	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 33 of 39)	ORR1D2|LTR|ERVL-MaLR	-58288.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	2.42	1.01	0.0	0.8	9.41	4.39	4.32	5.92	1.97	0.5	4.52	5.64
Merged-chr8-4165325-1	chr8	4165225	4165425	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1242.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	11.31	4.53	0.0	2.41	2.05	1.88	1.99	1.82	11.41	8.54	10.05	3.13
Merged-chr1-105865869-1	chr1	105865769	105865969	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85146.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	1.62	2.26	4.56	1.61	2.86	2.2	2.66	5.89	0.98	3.51	1.0	0.63
Merged-chr16-4268177-3	chr16	4268050	4268250	+	694.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	38921.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	6.86	7.55	4.56	4.83	4.09	10.98	11.29	5.1	8.65	8.03	15.58	4.07
Merged-chr3-65318122-3	chr3	65318034	65318234	+	694.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-15449.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	5.25	9.06	9.7	1.61	7.77	5.02	3.65	4.26	17.7	10.54	14.07	5.64
Merged-chr2-142694648-3	chr2	142694535	142694735	+	694.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	206829.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	2.83	7.04	10.27	4.02	16.36	22.26	11.63	11.94	8.85	9.04	23.62	7.21
Merged-chr13-34130501-3	chr13	34130393	34130593	+	694.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023716)	promoter-TSS (NM_023716)	-139.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	12.52	8.55	7.42	8.45	9.0	13.8	11.63	13.68	7.28	8.03	8.54	1.57
Merged-chr19-5613176-2	chr19	5613082	5613282	+	694.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3088.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	7.27	6.54	3.99	7.24	12.68	11.92	5.31	5.78	10.42	5.52	9.04	7.21
Merged-chr2-26498801-2	chr2	26498727	26498927	+	694.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4995.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	3.23	10.56	1.71	6.44	2.86	10.66	9.63	5.94	9.05	8.54	14.57	5.95
Merged-chr1-136116356-2	chr1	136116260	136116460	+	694.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	7.27	5.03	0.57	6.84	7.77	9.09	2.99	10.21	7.08	11.55	11.56	11.28
Merged-chr11-54093235-3	chr11	54093145	54093345	+	694.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7679.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.25	7.55	10.84	3.22	5.32	11.6	5.98	6.98	10.23	8.03	12.06	5.64
Merged-chr2-28204372-3	chr2	28204262	28204462	+	694.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	-1327.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	9.29	2.77	5.13	9.65	3.27	13.8	2.33	6.76	12.19	8.54	8.04	7.21
Merged-chr8-10007348-3	chr8	10007223	10007423	+	694.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347309, exon 2 of 6)	exon (NM_001347309, exon 2 of 6)	690.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	5.25	1.01	11.98	3.22	3.68	5.33	4.65	3.25	7.67	7.53	4.52	5.95
Merged-chr6-83028745-3	chr6	83028636	83028836	+	694.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4735.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.65	12.32	14.26	11.26	15.14	7.53	10.96	6.93	9.05	4.02	10.05	8.14
Merged-chr11-58108036-2	chr11	58107926	58108126	+	694.821411	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	3797.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.23	7.04	0.0	4.02	7.77	2.51	6.31	2.55	0.98	0.5	1.0	1.57
Merged-chr4-144973466-3	chr4	144973374	144973574	+	694.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	80337.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	10.09	4.53	17.11	3.22	6.55	5.33	4.65	6.22	21.44	8.54	11.05	11.59
Merged-chr12-117385907-3	chr12	117385824	117386024	+	694.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48912.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	8.08	4.78	10.27	7.64	14.32	8.47	8.97	13.51	10.42	4.02	16.58	5.33
Merged-chrX-99045490-3	chrX	99045370	99045570	+	694.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	2889.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	5.25	6.29	8.56	5.63	7.77	9.41	14.95	18.36	7.47	4.52	10.05	6.58
Merged-chrX-13132152-2	chrX	13132038	13132238	+	694.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009481, exon 23 of 45)	exon (NM_009481, exon 23 of 45)	60640.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	4.04	5.28	7.42	9.25	4.91	6.27	1.66	11.41	12.59	1.0	10.05	6.89
Merged-chr11-72946143-2	chr11	72946043	72946243	+	694.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15026.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	6.46	9.81	9.13	7.64	19.23	11.6	7.64	5.47	6.88	9.54	10.55	3.13
Merged-chr1-33739436-2	chr1	33739319	33739519	+	694.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008999, exon 8 of 8)	3' UTR (NM_008999, exon 8 of 8)	18331.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	2.42	2.52	6.28	0.0	4.91	8.47	7.97	6.87	7.87	5.52	5.53	12.22
Merged-chr7-16453392-3	chr7	16453355	16453555	+	694.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026938, intron 1 of 2)	intron (NM_026938, intron 1 of 2)	676.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	6.86	6.29	5.13	3.62	3.27	2.2	7.97	4.71	6.49	8.54	8.04	11.28
Merged-chr5-99245525-4	chr5	99245447	99245647	+	694.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	7380.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.04	4.53	5.13	6.44	10.64	8.78	6.31	3.81	9.64	11.55	7.54	6.58
Merged-chr13-29650841-3	chr13	29650778	29650978	+	694.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131896, intron 8 of 16)	L1MEc|LINE|L1	204795.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	4.04	7.8	7.42	7.64	8.59	14.42	14.95	5.55	5.51	7.53	7.03	3.45
Merged-chr14-52098556-3	chr14	52098465	52098665	+	694.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	5456.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	14.54	6.79	6.85	10.46	6.55	6.59	7.97	6.95	7.08	12.05	15.58	10.02
Merged-chr18-53845615-1	chr18	53845515	53845715	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16498.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.81	1.51	9.13	5.63	6.14	5.96	4.98	5.52	1.18	2.01	3.52	5.01
Merged-chr12-80197656-3	chr12	80197571	80197771	+	694.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	62700.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	12.11	7.04	19.4	5.63	7.36	4.08	6.98	4.96	3.93	9.54	6.03	7.21
Merged-chr1-37475513-2	chr1	37475411	37475611	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13094.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.27	2.01	0.0	5.63	14.73	15.05	7.31	5.8	9.64	16.07	15.07	6.58
Merged-chr19-12513201-1	chr19	12513101	12513301	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-11205.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.81	2.26	6.85	10.05	6.55	4.7	9.3	8.27	0.0	0.0	2.01	0.63
Merged-chr4-34764905-1	chr4	34764805	34765005	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-8646.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0.4	3.27	6.28	6.44	1.64	7.21	5.31	5.89	2.95	2.51	24.12	4.39
Merged-chr2-173546496-2	chr2	173546410	173546610	+	694.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23918.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.25	5.53	6.28	7.64	7.77	8.47	8.3	10.74	7.67	6.03	13.57	5.64
Merged-chr6-87543433-3	chr6	87543314	87543514	+	694.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-10155.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.06	5.03	7.99	7.24	1.64	8.78	2.33	9.0	10.62	11.55	10.55	9.71
Merged-chr19-37419741-2	chr19	37419636	37419836	+	694.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-15105.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	7.67	5.79	3.42	5.23	12.27	10.03	4.98	4.6	8.26	11.55	16.58	9.71
Merged-chr13-11904820-3	chr13	11904745	11904945	+	694.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	202100.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	3.23	6.04	10.27	8.45	11.05	6.59	3.99	4.77	13.37	13.05	8.54	6.89
Merged-chr14-30216854-2	chr14	30216755	30216955	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136631.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.04	1.01	11.41	8.04	9.0	4.39	3.32	7.07	6.1	5.52	7.54	3.13
Merged-chr11-55433217-1	chr11	55433117	55433317	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13137.0	NM_001290817	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.0	4.78	9.13	13.27	2.86	6.59	5.65	6.79	4.52	8.54	6.53	5.95
Merged-chr2-104422429-2	chr2	104422311	104422511	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6529.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	8.48	3.52	5.7	2.41	6.14	6.59	3.99	7.37	8.85	4.52	11.05	10.34
Merged-chr1-171492060-1	chr1	171491960	171492160	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-11418.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	2.83	8.8	6.85	5.63	3.27	5.02	5.98	8.16	3.54	0.0	2.01	0.94
Merged-chr16-23235517-2	chr16	23235406	23235606	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	9485.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.65	2.01	11.41	2.41	4.5	2.51	5.98	6.14	9.44	5.52	6.03	7.21
Merged-chr11-19823684-2	chr11	19823563	19823763	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100779.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	7.27	7.8	10.27	1.21	7.36	5.33	1.99	4.49	7.28	9.54	5.02	8.46
Merged-chr2-68364646-1	chr2	68364546	68364746	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 8 of 17)	intron (NM_016866, intron 8 of 17)	107335.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	1.62	1.26	1.71	4.02	9.41	4.08	4.32	5.41	5.11	6.53	9.04	2.19
Merged-chr8-106737049-2	chr8	106736951	106737151	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 12 of 17)	L2b|LINE|L2	53983.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	8.08	10.31	13.69	5.63	9.41	10.66	0.66	5.8	2.16	2.51	9.55	1.57
Merged-chr2-90535281-1	chr2	90535181	90535381	+	694.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	ID4|SINE|ID	45366.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.23	2.26	1.14	2.82	6.14	1.25	4.65	7.91	8.26	14.06	10.05	8.77
Merged-chr18-43493882-2	chr18	43493787	43493987	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55601.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	8.88	2.26	0.0	11.26	8.18	5.64	4.98	5.66	5.7	7.53	9.55	3.76
Merged-chr7-113289386-3	chr7	113289283	113289483	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357070, intron 9 of 19)	L3|LINE|CR1	79956.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	7.27	6.29	12.55	5.23	4.91	5.96	2.99	11.94	8.06	2.51	10.55	8.77
Merged-chr17-50889668-1	chr17	50889568	50889768	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	190987.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.21	2.01	0.0	0.8	9.41	7.84	1.66	5.83	5.31	4.02	5.53	4.7
Merged-chr8-69093040-3	chr8	69092893	69093093	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-3771.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	9.29	9.31	4.56	5.63	2.86	2.2	0.66	4.68	8.65	8.54	8.54	5.33
Merged-chr18-67133579-2	chr18	67133462	67133662	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010307)	promoter-TSS (NM_010307)	2.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	5.25	3.52	10.84	9.65	0.41	1.25	5.31	5.02	0.0	4.02	3.52	3.76
Merged-chr8-117471402-2	chr8	117471331	117471531	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12166.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	7.67	6.79	5.7	3.22	5.73	7.53	9.3	6.81	7.28	11.55	15.58	10.02
Merged-chr7-45491487-1	chr7	45491387	45491587	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2682.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	1.21	4.78	9.13	4.83	4.09	5.96	5.31	6.76	4.72	5.52	7.54	5.33
Merged-chr7-88242759-3	chr7	88242663	88242863	+	694.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35322.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	13.33	8.3	3.99	5.63	7.77	15.68	6.98	12.36	8.65	9.04	11.05	12.22
Merged-chr4-133513191-2	chr4	133513094	133513294	+	694.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5769.0	NM_001083916	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	6.86	5.28	1.71	13.67	8.59	10.35	5.31	3.62	10.82	16.07	12.06	11.9
Merged-chr11-46431372-3	chr11	46431281	46431481	+	694.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5566.0	NM_001104557	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	7.67	7.04	11.98	8.85	10.64	12.86	3.99	6.42	11.8	4.02	17.59	9.71
Merged-chr10-126869803-3	chr10	126869706	126869906	+	694.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	31565.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	7.67	7.55	6.28	2.01	6.14	9.09	5.31	10.18	11.6	10.04	6.53	4.07
Merged-chr3-9605960-2	chr3	9605900	9606100	+	694.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	4085.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	1.21	5.28	3.99	10.46	7.36	5.02	6.64	13.37	5.51	4.52	14.57	6.58
Merged-chrX-93793366-2	chrX	93793269	93793469	+	694.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145630, intron 5 of 11)	B3|SINE|B2	38726.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	4.44	8.55	16.54	9.65	6.95	10.35	1.99	9.98	6.69	19.08	10.05	6.58
Merged-chr5-108082553-1	chr5	108082453	108082653	+	694.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253879, intron 3 of 14)	B2_Mm2|SINE|B2	4388.0	NM_001253878	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	4.04	7.55	5.13	6.44	4.09	5.64	1.33	3.45	10.42	16.57	11.56	8.46
Merged-chr4-115738744-2	chr4	115738566	115738766	+	694.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172698, exon 1 of 12)	exon (NM_172698, exon 1 of 12)	593.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	6.06	3.02	3.42	1.61	2.45	4.08	7.31	4.88	2.95	4.02	9.55	6.58
Merged-chr1-88252928-4	chr1	88252703	88252903	+	694.354187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	16605.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	5.25	2.77	0.0	4.42	4.5	3.76	4.32	3.08	3.93	9.04	2.01	6.58
Merged-chr12-54794031-2	chr12	54793953	54794153	+	694.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026998, intron 2 of 13)	B3A|SINE|B2	1609.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	4.04	3.52	2.28	8.45	5.73	10.35	9.63	7.09	5.9	1.0	5.53	6.27
Merged-chr4-59259949-2	chr4	59259850	59260050	+	694.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-101.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	10.09	4.02	9.13	9.25	4.09	3.14	6.98	4.68	15.93	11.05	10.55	5.33
Merged-chr6-83583122-2	chr6	83583014	83583214	+	694.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_078345, intron 6 of 7)	Lx8|LINE|L1	-10610.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	11.31	7.04	3.99	8.45	5.73	5.96	5.65	5.66	10.82	7.03	16.58	7.83
Merged-chr12-82334159-1	chr12	82334059	82334259	+	694.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	22810.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	8.48	12.58	15.4	6.84	2.45	0.0	0.33	1.79	0.39	0.5	1.0	0.63
Merged-chr2-6162841-1	chr2	6162741	6162941	+	694.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29958.0	NR_033471	100038358.0	Mm.353975	NR_033470	ENSMUSG00000102887	Gm10857	AU015850	predicted gene 10857	ncRNA	0.81	1.01	1.14	3.22	7.36	6.27	5.65	6.36	0.59	3.01	0.5	2.19
Merged-chr12-4161496-1	chr12	4161396	4161596	+	694.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	URR1B|DNA|hAT-Charlie	27343.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	5.65	3.52	5.13	12.47	11.05	8.15	10.96	7.32	8.65	15.57	7.54	4.7
Merged-chr14-27230905-2	chr14	27230803	27231003	+	694.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-7107.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.42	6.54	4.56	17.29	11.05	8.78	2.99	6.76	9.64	14.56	17.59	7.21
Merged-chr4-149875538-2	chr4	149875476	149875676	+	694.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79430.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.4	3.02	1.71	0.4	2.05	2.82	6.98	5.8	6.1	4.02	11.56	5.64
Merged-chr6-108556046-2	chr6	108555949	108556149	+	694.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66306.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.04	4.53	22.25	9.25	7.36	4.39	8.3	13.65	13.37	4.02	9.04	6.27
Merged-chr5-67820999-2	chr5	67820871	67821071	+	694.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	26460.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.46	2.26	7.42	1.61	5.32	6.27	6.98	6.79	5.7	3.51	5.53	7.21
Merged-chr8-94492193-1	chr8	94492093	94492293	+	694.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033207, intron 18 of 48)	intron (NM_001033207, intron 18 of 48)	-12853.0	NR_106040	102466800.0		NR_106040	ENSMUSG00000098511	Mir7072	Gm27665|mmu-mir-7072	microRNA 7072	ncRNA	4.85	3.02	7.42	6.44	7.77	8.15	6.98	4.74	2.36	0.5	9.04	5.64
Merged-chr14-33313842-3	chr14	33313741	33313941	+	694.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	97018.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	9.69	5.03	5.7	2.82	12.27	9.41	1.99	11.89	9.64	4.02	9.04	8.14
Merged-chr12-86924002-3	chr12	86923920	86924120	+	694.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23021.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	10.9	6.79	2.28	4.02	5.73	7.84	6.98	9.81	13.77	7.53	10.55	10.65
Merged-chr18-35745843-2	chr18	35745723	35745923	+	694.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-5269.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	3.23	4.28	3.99	8.85	9.0	6.9	11.63	4.82	8.46	10.54	6.53	10.34
Merged-chr8-35104926-1	chr8	35104826	35105026	+	694.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-139236.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	8.08	3.02	3.42	10.05	9.0	8.15	5.65	6.79	2.95	5.52	9.55	5.01
Merged-chr19-6279089-4	chr19	6279118	6279318	+	694.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2322.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	2.83	3.27	10.84	2.41	4.5	4.08	5.31	2.38	5.7	5.02	2.51	4.07
Merged-chr8-14605674-1	chr8	14605574	14605774	+	694.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-282862.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.23	0.5	11.41	9.65	13.5	13.17	7.97	6.87	0.79	0.0	2.51	0.31
Merged-chr12-84337483-2	chr12	84337378	84337578	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144833, intron 8 of 11)	intron (NM_144833, intron 8 of 11)	20619.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	6.86	4.53	6.85	5.63	5.32	8.15	5.98	8.44	10.62	7.53	10.55	4.39
Merged-chr2-102967112-2	chr2	102967017	102967217	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65452.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.08	2.77	3.99	4.42	3.68	10.98	5.98	5.05	13.57	8.03	11.05	8.77
Merged-chr7-45081319-2	chr7	45081209	45081409	+	694.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	10904.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.86	4.28	9.13	11.26	8.18	5.64	16.94	14.5	12.0	4.52	8.54	5.64
Merged-chr2-24316978-2	chr2	24316871	24317071	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-19889.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.25	1.51	4.56	5.23	2.05	12.54	6.64	6.28	11.21	6.03	15.07	7.83
Merged-chr11-69945390-2	chr11	69945270	69945470	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009204, exon 7 of 11)	exon (NM_009204, exon 7 of 11)	2820.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	4.85	2.01	9.13	3.62	6.95	8.78	6.98	5.72	9.05	13.56	12.06	5.64
Merged-chr16-33397283-2	chr16	33397164	33397364	+	694.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	-3181.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	7.27	5.03	13.69	7.24	2.86	13.17	4.98	6.7	10.03	9.54	6.53	2.82
Merged-chrX-129750260-3	chrX	129750192	129750392	+	694.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	CpG	550.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	5.65	8.8	4.56	5.63	4.09	4.08	8.3	8.94	11.01	7.53	11.05	6.27
Merged-chr16-87717447-3	chr16	87717341	87717541	+	694.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 2 of 4)	L1MD2|LINE|L1	18487.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	10.09	6.54	13.69	13.67	5.73	6.59	4.98	8.36	12.98	11.05	4.52	9.4
Merged-chr19-41337018-3	chr19	41336905	41337105	+	694.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	48065.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	9.69	4.28	10.84	12.47	6.14	6.9	7.31	7.68	11.21	12.55	15.07	13.47
Merged-chr2-84620644-1	chr2	84620544	84620744	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355064, intron 4 of 18)	intron (NM_001355064, intron 4 of 18)	28836.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.81	0.25	2.28	3.22	9.82	2.82	3.32	5.52	7.67	2.51	8.04	2.51
Merged-chr17-34186937-3	chr17	34186816	34187016	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	414.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	7.27	4.02	7.99	6.03	2.86	13.17	2.33	4.54	9.05	6.03	3.01	10.65
Merged-chr9-94361321-1	chr9	94361221	94361421	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176760.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.65	1.26	9.13	9.65	0.82	1.25	6.64	4.51	5.9	11.55	8.04	4.7
Merged-chr16-49853839-1	chr16	49853739	49853939	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1815.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.25	4.02	0.57	1.61	4.5	5.96	6.31	5.64	5.31	5.52	1.51	0.63
Merged-chr10-67265036-1	chr10	67264936	67265136	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20245.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.42	4.02	1.71	4.42	0.41	1.25	2.66	2.21	7.08	3.51	2.51	6.27
Merged-chr10-121489295-1	chr10	121489195	121489395	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-13045.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	12.92	7.8	14.83	17.7	13.91	8.47	13.95	15.0	16.13	11.55	19.6	14.41
Merged-chr17-50996470-3	chr17	50996375	50996575	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	162903.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.27	7.8	13.12	5.23	13.91	6.59	1.99	10.79	12.39	9.54	9.04	4.07
Merged-chr12-73045449-1	chr12	73045349	73045549	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009189, intron 1 of 1)	CpG	1263.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.4	3.27	4.56	0.8	1.64	1.25	4.32	3.53	0.98	0.0	2.01	2.82
Merged-chr17-25809019-1	chr17	25808919	25809119	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164225)	promoter-TSS (NM_001164225)	-66.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	7.27	4.78	0.57	2.41	7.36	4.08	3.65	1.85	3.34	10.04	1.51	6.58
Merged-chr4-123665181-1	chr4	123665081	123665281	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_136925)	promoter-TSS (NR_136925)	-700.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	12.11	8.8	0.57	1.21	8.18	2.82	1.33	1.77	5.51	3.51	1.51	8.14
Merged-chr3-130946306-1	chr3	130946206	130946406	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-163991.0	NM_010703	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	4.04	1.01	2.28	1.61	4.5	7.21	16.94	4.65	7.08	4.52	2.01	1.25
Merged-chr15-64512887-1	chr15	64512787	64512987	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129968.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.5	0.0	0.8	2.45	2.51	5.31	5.89	3.15	1.0	2.51	2.82
Merged-chr1-44034500-2	chr1	44034389	44034589	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-14483.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	4.85	9.06	9.13	8.04	4.5	9.41	4.65	11.36	4.33	8.03	14.57	5.64
Merged-chr15-73351236-1	chr15	73351136	73351336	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	71955.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.42	1.01	11.98	4.02	5.73	4.08	11.29	6.45	4.33	4.02	6.03	2.82
Merged-chr8-92858694-1	chr8	92858594	92858794	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	3361.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	6.46	4.02	13.69	4.83	9.0	7.21	6.64	15.17	1.18	0.5	3.52	0.0
Merged-chr5-139558562-1	chr5	139558462	139558662	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14664.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	5.65	4.28	1.14	7.24	8.59	1.57	5.31	6.59	4.33	2.51	1.51	3.13
Merged-chr6-31413107-1	chr6	31413007	31413207	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	14279.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	8.08	4.53	9.13	6.44	6.55	6.27	3.32	9.48	3.54	5.02	2.01	4.7
Merged-chr5-29435200-1	chr5	29435100	29435300	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	533.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	9.29	12.07	5.7	14.08	11.05	10.98	10.96	12.22	16.72	10.54	11.05	14.41
Merged-chr10-57721668-1	chr10	57721568	57721768	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63255.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.04	6.79	11.41	10.46	3.27	5.33	5.98	12.76	7.87	5.52	4.02	5.33
Merged-chr17-34265162-2	chr17	34265107	34265307	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207105, intron 2 of 5)	intron (NM_207105, intron 2 of 5)	1980.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	7.27	6.54	7.99	4.02	3.68	2.2	3.65	0.98	8.46	12.55	6.53	5.95
Merged-chr6-116712265-2	chr6	116712157	116712357	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178768, intron 1 of 4)	intron (NM_178768, intron 1 of 4)	4501.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	7.27	4.53	7.42	3.22	0.82	7.21	2.99	7.71	10.42	5.52	8.04	3.13
Merged-chr13-5866438-2	chr13	5866343	5866543	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4954.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.65	10.06	2.28	5.23	20.46	12.23	5.31	5.69	10.03	9.54	8.04	7.52
Merged-chr11-69414199-1	chr11	69414099	69414299	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	2.83	4.02	4.56	2.41	11.45	4.7	4.65	7.85	4.33	8.54	8.54	3.76
Merged-chr6-65608902-1	chr6	65608802	65609002	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	18504.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	4.04	3.02	6.85	7.24	6.95	3.14	2.99	11.1	3.54	8.54	9.55	5.01
Merged-chr6-52213266-1	chr6	52213166	52213366	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010452)	promoter-TSS (NM_010452)	-199.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	3.23	1.51	3.42	3.22	2.86	2.2	6.98	1.65	2.56	6.03	1.51	3.45
Merged-chr6-54282527-1	chr6	54282427	54282627	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 7 of 12)	Lx8|LINE|L1	9705.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.83	2.77	0.0	7.24	3.27	6.27	1.33	7.26	6.1	0.0	6.53	2.82
Merged-chr8-108981648-2	chr8	108981545	108981745	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	44785.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	6.46	1.51	7.42	4.02	6.95	1.25	3.65	4.71	10.42	5.02	15.07	5.95
Merged-chr6-52060768-1	chr6	52060668	52060868	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42181.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.81	4.02	8.56	10.05	3.27	2.82	7.64	5.16	4.13	1.0	8.04	6.58
Merged-chr6-142989715-1	chr6	142989615	142989815	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25263.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	8.08	3.52	0.0	4.42	3.68	5.33	1.99	5.44	1.38	0.5	5.53	2.82
Merged-chr1-54944836-1	chr1	54944736	54944936	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-18449.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.85	3.27	6.85	3.22	6.14	5.64	12.95	7.65	7.28	1.0	2.01	3.45
Merged-chr2-125795322-1	chr2	125795222	125795422	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-12452.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.81	0.25	0.0	0.8	0.0	0.0	1.0	0.39	17.51	14.56	12.06	7.52
Merged-chr4-72380310-1	chr4	72380210	72380410	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	179066.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	6.46	4.28	5.7	4.42	4.09	5.02	6.31	5.83	7.67	9.04	7.03	3.13
Merged-chr11-43544215-1	chr11	43544115	43544315	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045530, intron 2 of 5)	intron (NM_001045530, intron 2 of 5)	15466.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	3.23	0.75	5.7	5.63	6.95	5.02	2.66	6.95	4.52	1.0	1.0	1.25
Merged-chr16-10488586-1	chr16	10488486	10488686	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007575, intron 1 of 18)	intron (NM_007575, intron 1 of 18)	408.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	7.27	5.28	4.56	4.02	2.45	6.9	2.99	4.04	9.24	1.51	6.03	5.64
Merged-chr14-47352969-1	chr14	47352869	47353069	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20891.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	10.5	3.02	5.13	3.62	1.23	5.96	1.99	9.39	11.21	3.01	7.54	4.7
Merged-chr4-7392649-1	chr4	7392549	7392749	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168039.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	4.04	3.02	11.98	6.03	1.64	2.82	1.0	9.7	4.92	13.05	16.58	4.39
Merged-chr1-161033957-1	chr1	161033857	161034057	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153814)	promoter-TSS (NR_153814)	892.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	8.48	1.76	7.99	2.41	8.18	4.7	11.63	9.81	1.18	2.51	1.0	4.07
Merged-chr4-102649190-1	chr4	102649090	102649290	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	59347.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.27	5.53	9.13	12.07	13.09	9.72	12.95	5.97	0.79	1.0	0.0	0.0
Merged-chr6-29769155-2	chr6	29769038	29769238	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	CpG	695.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	8.88	5.53	8.56	6.03	4.91	7.53	1.99	8.5	8.46	10.54	4.52	8.14
Merged-chr8-71308787-2	chr8	71308705	71308905	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36091.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	10.5	4.53	6.28	3.22	0.82	7.84	3.99	10.93	9.64	10.54	8.04	5.95
Merged-chr7-143628709-2	chr7	143628597	143628797	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	627.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	8.88	9.31	9.7	9.65	4.91	1.88	7.64	6.34	17.11	7.03	7.03	1.57
Merged-chr3-142744212-1	chr3	142744112	142744312	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001293560, exon 14 of 14)	3' UTR (NM_001293560, exon 14 of 14)	-21035.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	4.44	1.76	6.28	6.84	6.14	2.82	2.33	5.8	5.7	9.04	6.03	6.58
Merged-chr10-95803380-1	chr10	95803280	95803480	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-137283.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	1.62	1.51	7.99	10.86	2.45	0.63	12.62	6.87	3.93	0.0	10.05	5.01
Merged-chr17-88450714-1	chr17	88450614	88450814	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	10010.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.65	11.32	0.0	1.21	5.32	23.2	8.64	1.32	5.7	9.04	3.01	4.39
Merged-chr2-178058445-1	chr2	178058345	178058545	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19980.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	3.23	5.28	1.14	4.02	11.45	2.2	5.65	4.96	9.44	4.02	6.53	7.21
Merged-chr1-181125344-3	chr1	181125227	181125427	+	693.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026171, intron 10 of 22)	ORR1D1|LTR|ERVL-MaLR	18877.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	11.31	9.31	20.54	10.05	6.55	7.84	2.33	4.35	11.01	6.53	4.02	8.14
Merged-chr16-30764356-2	chr16	30764253	30764453	+	693.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	164630.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.42	5.03	14.26	6.44	9.0	13.8	6.31	6.98	10.23	11.05	13.57	6.58
Merged-chr2-91924228-3	chr2	91924117	91924317	+	693.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	2028.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	12.52	7.29	9.13	2.41	13.5	7.84	1.0	4.37	12.19	4.52	14.07	12.22
Merged-chr12-100422759-2	chr12	100422668	100422868	+	693.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98054.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	12.52	7.04	7.99	12.07	14.73	11.29	8.97	22.93	2.75	3.01	5.02	7.21
Merged-chr11-9317468-2	chr11	9317358	9317558	+	693.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 23 of 61)	intron (NM_178259, intron 23 of 61)	125516.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.02	7.04	3.99	5.23	8.59	7.53	2.33	5.86	17.51	11.55	20.6	6.89
Merged-chr19-6271455-3	chr19	6271343	6271543	+	693.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5453.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	9.69	5.53	9.7	2.41	15.55	8.47	5.98	10.29	6.69	4.52	14.07	10.34
Merged-chr8-19161031-2	chr8	19160929	19161129	+	693.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3142.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	7.67	8.3	6.28	9.25	7.36	6.27	6.64	9.9	4.33	2.51	2.51	10.96
Merged-chr11-58225874-2	chr11	58225796	58225996	+	693.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10919.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.85	10.82	5.13	6.44	12.68	9.72	3.65	5.24	7.67	2.51	7.54	5.01
Merged-chr13-91809628-3	chr13	91809514	91809714	+	693.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1918.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	1.62	9.06	3.42	6.84	6.95	7.84	5.31	6.31	9.64	13.05	10.55	3.76
Merged-chr17-28079906-3	chr17	28079829	28080029	+	693.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013687, exon 2 of 10)	exon (NM_013687, exon 2 of 10)	655.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	6.06	6.54	4.56	8.85	10.64	8.15	5.98	6.81	8.65	7.53	9.55	3.45
Merged-chr4-41468829-3	chr4	41468733	41468933	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	3685.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	10.5	7.8	7.99	12.47	10.64	15.05	3.65	5.24	16.92	4.52	7.03	11.59
Merged-chr1-92106873-3	chr1	92106761	92106961	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	73480.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	8.88	5.79	10.84	17.7	6.95	8.15	11.29	15.25	8.65	14.56	11.56	3.45
Merged-chr7-125495997-3	chr7	125495871	125496071	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4429.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	6.46	7.04	11.98	12.47	9.82	9.41	6.64	9.64	7.67	5.52	8.04	4.39
Merged-chr2-44983040-3	chr2	44982997	44983197	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355289)	TTS (NM_001355289)	40080.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	8.48	3.52	9.13	10.46	4.91	5.96	10.3	4.37	8.65	7.03	8.04	12.84
Merged-chr11-5759168-2	chr11	5759072	5759272	+	693.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	Lx8b|LINE|L1	-2978.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	3.23	8.05	6.85	10.86	6.14	3.45	7.31	7.82	3.54	3.51	5.53	3.13
Merged-chr15-50751257-2	chr15	50751139	50751339	+	693.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	137810.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.04	6.29	13.12	3.22	11.45	23.83	4.98	6.03	10.62	6.03	3.01	2.51
Merged-chr7-24564862-2	chr7	24564763	24564963	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360168, intron 4 of 17)	intron (NM_001360168, intron 4 of 17)	13376.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	6.46	6.79	1.14	3.22	1.64	7.53	3.65	6.81	8.46	10.04	7.03	3.76
Merged-chr6-124672374-2	chr6	124672275	124672475	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	9271.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	5.25	4.78	4.56	3.62	4.5	18.19	5.65	7.85	3.54	4.52	10.55	5.95
Merged-chr3-94949961-1	chr3	94949861	94950061	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA8|LINE|L1	-4147.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	7.67	2.52	4.56	7.64	9.82	8.15	6.64	5.27	9.05	9.54	4.02	5.01
Merged-chr5-124354805-2	chr5	124354718	124354918	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013812)	promoter-TSS (NM_013812)	-190.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	8.08	5.03	5.7	2.41	13.91	4.08	3.32	8.83	11.01	11.55	9.04	9.08
Merged-chr9-45306943-2	chr9	45306854	45307054	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12146.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	2.83	3.27	5.13	3.22	10.23	8.47	3.65	7.15	9.44	9.04	6.03	5.95
Merged-chr8-106106416-3	chr8	106106300	106106500	+	693.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010901, intron 8 of 9)	intron (NM_010901, intron 8 of 9)	-29000.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	8.48	7.55	9.13	10.05	11.86	6.9	11.63	10.35	10.62	8.03	23.62	9.08
Merged-chr10-80566478-3	chr10	80566358	80566558	+	693.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_078477)	TTS (NM_078477)	-4898.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	7.27	8.8	5.7	4.83	8.59	9.09	2.66	4.6	12.59	9.04	18.59	6.89
Merged-chr12-17710283-1	chr12	17710183	17710383	+	693.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	19474.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.81	3.02	2.28	0.8	1.64	1.25	0.0	0.39	14.75	11.05	11.56	4.7
Merged-chr4-154163485-1	chr4	154163385	154163585	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2801.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	5.25	4.02	0.57	4.02	2.45	6.9	6.31	5.33	6.69	6.53	9.55	2.82
Merged-chr17-35178725-3	chr17	35178636	35178836	+	693.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2684.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	9.69	8.3	2.28	6.84	3.27	12.54	4.65	5.8	9.24	6.03	11.05	6.27
Merged-chr3-97930607-1	chr3	97930507	97930707	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	434.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	6.86	6.54	5.7	4.83	7.36	5.64	4.98	6.31	5.9	2.51	4.02	4.7
Merged-chr4-43509477-3	chr4	43509397	43509597	+	693.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-750.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	6.06	4.02	3.99	10.05	5.32	8.47	6.98	7.01	6.1	2.51	4.02	5.95
Merged-chr1-54933737-1	chr1	54933637	54933837	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7350.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.02	2.52	1.71	1.21	4.91	10.35	5.31	1.88	6.29	5.02	2.51	1.25
Merged-chr6-52240561-1	chr6	52240461	52240661	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001122950, exon 1 of 2)	5' UTR (NM_001122950, exon 1 of 2)	293.0	NM_001122950	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	4.04	4.53	7.42	7.24	6.95	7.84	3.32	6.06	4.33	7.53	4.02	1.57
Merged-chr11-50042796-2	chr11	50042707	50042907	+	693.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	17476.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	10.5	13.83	11.41	4.83	5.32	10.66	5.98	6.76	9.24	3.01	7.03	5.95
Merged-chr14-54712176-2	chr14	54712080	54712280	+	693.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-6.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	6.06	5.79	6.85	4.83	6.95	6.59	8.64	6.73	6.49	12.55	4.52	7.52
Merged-chr14-43830599-3	chr14	43830504	43830704	+	693.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-10965.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	17.77	10.06	24.53	13.27	8.59	6.27	6.31	1.46	9.05	13.56	17.08	5.33
Merged-chr7-109210017-3	chr7	109209887	109210087	+	693.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34780.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	10.9	5.79	15.4	17.29	4.91	8.15	5.98	17.1	8.26	11.05	11.05	15.66
Merged-chr13-98867446-3	chr13	98867379	98867579	+	693.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23563.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	8.48	9.06	6.28	8.85	6.14	4.7	5.31	8.27	7.28	9.54	9.04	6.58
Merged-chr1-137922895-3	chr1	137922736	137922936	+	693.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43619.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	4.04	6.04	7.42	12.07	13.5	8.15	7.31	11.36	6.88	4.52	11.05	5.33
Merged-chr1-171101400-2	chr1	171101306	171101506	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20255.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	12.11	8.05	4.56	5.23	4.09	5.64	2.99	5.13	1.38	1.51	1.51	3.13
Merged-chr5-33921136-1	chr5	33921036	33921236	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011914, intron 2 of 10)	intron (NM_011914, intron 2 of 10)	15122.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	7.27	3.52	2.28	11.66	10.23	8.15	5.65	6.73	12.59	5.02	7.03	2.51
Merged-chr18-56716429-1	chr18	56716329	56716529	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.44	4.53	1.14	3.62	1.23	4.39	10.63	6.98	5.9	8.03	7.03	0.94
Merged-chr2-166732388-2	chr2	166732306	166732506	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18574.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.65	2.52	6.28	6.03	7.77	7.21	4.32	2.86	13.77	12.05	7.54	5.01
Merged-chr1-171112071-2	chr1	171111946	171112146	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9615.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.67	3.77	4.56	2.41	3.68	2.82	4.98	4.49	2.95	5.02	7.03	1.57
Merged-chr3-28015962-2	chr3	28015859	28016059	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	31788.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	9.69	2.52	0.0	3.62	9.0	3.14	1.33	7.29	9.83	3.51	11.05	1.57
Merged-chr12-80113913-2	chr12	80113796	80113996	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-883.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.85	5.79	6.28	7.24	16.36	7.53	5.65	6.67	6.88	9.04	12.06	7.52
Merged-chr11-103247746-2	chr11	103247646	103247846	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	19655.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.06	4.28	15.97	5.23	9.0	8.47	5.98	10.96	13.77	9.04	9.04	11.28
Merged-chr6-87724463-1	chr6	87724363	87724563	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6406.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	9.69	4.28	2.28	1.21	4.5	8.47	3.99	5.41	3.34	1.51	0.5	0.31
Merged-chr3-96558410-1	chr3	96558310	96558510	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023719, exon 1 of 8)	exon (NM_023719, exon 1 of 8)	453.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	5.25	5.28	5.7	7.24	5.73	5.64	4.65	5.47	8.65	4.52	7.03	12.84
Merged-chr11-98075550-2	chr11	98075463	98075663	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22101.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	7.27	1.26	5.13	1.61	8.18	5.33	2.66	4.93	13.96	14.06	9.55	9.4
Merged-chr6-108417700-2	chr6	108417592	108417792	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 38 of 61)	intron (NM_010585, intron 38 of 61)	-72051.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	8.08	4.53	2.28	2.41	3.27	12.86	2.33	6.73	3.74	7.53	16.58	3.76
Merged-chr18-35598097-1	chr18	35597997	35598197	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-520.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	3.63	2.77	3.42	7.24	4.09	5.96	7.31	8.1	5.7	7.03	3.01	2.82
Merged-chr11-4080418-3	chr11	4080316	4080516	+	693.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	15015.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	13.33	6.04	7.42	10.46	11.45	11.92	8.97	5.89	16.92	13.56	19.09	9.71
Merged-chr2-58865366-3	chr2	58865256	58865456	+	693.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 11 of 13)	RMER1B|Other|Other	110172.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	7.27	9.81	7.42	3.62	9.0	20.38	12.29	8.86	10.23	15.57	10.05	7.83
Merged-chr14-61650490-3	chr14	61650436	61650636	+	693.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	-18426.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	4.04	3.02	9.7	3.62	10.23	6.9	5.98	4.77	8.26	8.03	4.52	5.95
Merged-chr15-80798008-3	chr15	80797916	80798116	+	693.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-594.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	8.08	10.31	10.84	9.25	8.59	9.09	6.64	7.29	11.01	21.59	3.52	6.27
Merged-chr11-49245385-3	chr11	49245288	49245488	+	693.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010794, exon 2 of 3)	5' UTR (NM_010794, exon 2 of 3)	1197.0	NM_001110148	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	7.27	11.07	9.7	7.64	12.27	5.64	6.31	5.24	14.75	14.06	13.57	11.28
Merged-chr5-96244715-3	chr5	96244626	96244826	+	693.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053158, intron 7 of 8)	L1ME1|LINE|L1	34611.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	10.09	6.04	18.25	4.02	6.55	11.92	8.97	18.36	11.01	11.05	18.09	10.02
Merged-chr3-59263828-2	chr3	59263710	59263910	+	693.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	-825.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.46	8.3	3.99	10.46	10.23	7.84	3.99	5.8	14.75	8.54	14.07	3.45
Merged-chr2-3427771-2	chr2	3427593	3427793	+	693.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	3562.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	7.27	5.28	4.56	5.63	4.91	10.66	1.33	2.02	6.49	6.53	5.02	3.13
Merged-chr14-36316823-2	chr14	36316670	36316870	+	693.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	221805.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	6.46	2.52	2.85	2.82	9.0	5.96	2.66	4.63	7.08	1.51	5.02	4.07
Merged-chr14-33808703-2	chr14	33808617	33808817	+	693.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131113, intron 3 of 3)	MER121|DNA|TcMar?	2566.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	4.04	2.77	10.27	3.22	6.55	5.64	8.97	7.77	10.62	2.51	10.05	2.82
Merged-chr1-159233743-2	chr1	159233599	159233799	+	693.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	1499.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	4.04	1.76	4.56	2.01	4.91	6.59	4.65	4.88	5.7	9.54	11.05	3.76
Merged-chr1-157386697-1	chr1	157386597	157386797	+	693.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-25655.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.0	0.0	1.14	0.8	7.36	7.53	4.98	9.87	0.98	0.0	4.02	0.94
Merged-chr4-89146510-1	chr4	89146410	89146610	+	693.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	9140.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	6.46	3.52	6.85	2.41	7.77	8.78	1.33	6.2	5.11	9.04	11.56	5.64
Merged-chr3-89963431-3	chr3	89963272	89963472	+	693.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081182)	promoter-TSS (NM_001081182)	-40.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	6.06	6.04	4.56	7.64	3.68	7.21	4.32	7.51	5.31	4.52	3.52	4.39
Merged-chr13-119602066-1	chr13	119601966	119602166	+	693.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21753.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.63	2.26	5.13	1.21	7.36	5.33	8.97	7.57	6.29	10.04	2.51	9.71
Merged-chr10-111503269-2	chr10	111503163	111503363	+	693.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2475.0	NR_033603	382421.0	Mm.245643	NR_033603	ENSMUSG00000111997	Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	14.94	3.77	1.71	6.44	7.77	9.41	4.65	5.69	10.42	12.05	4.02	8.77
Merged-chr10-94828079-3	chr10	94827984	94828184	+	693.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	116494.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	8.08	6.79	4.56	14.88	11.45	7.53	7.64	13.26	11.41	7.53	9.55	5.95
Merged-chr19-46563152-2	chr19	46563053	46563253	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	10029.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	5.65	5.79	15.97	3.22	4.91	15.05	4.65	8.5	11.21	2.01	9.04	10.65
Merged-chr3-87361350-2	chr3	87361243	87361443	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	3462.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.81	3.27	5.7	8.45	6.55	2.82	10.3	13.57	8.65	7.53	7.03	10.02
Merged-chr4-86548499-2	chr4	86548389	86548589	+	693.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	9814.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	5.65	9.56	8.56	0.8	2.05	8.47	4.32	7.43	4.72	2.51	5.02	5.95
Merged-chr6-116632281-2	chr6	116632196	116632396	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178045)	TTS (NM_178045)	-3297.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.63	3.52	7.42	8.85	4.5	1.88	6.64	4.6	10.23	9.04	12.56	10.65
Merged-chr6-49035953-2	chr6	49035864	49036064	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053110)	promoter-TSS (NM_053110)	-554.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	7.67	3.02	1.14	1.61	4.09	5.64	9.63	10.88	10.42	11.55	4.02	5.01
Merged-chr3-28543768-3	chr3	28543672	28543872	+	693.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026910, intron 7 of 32)	intron (NM_026910, intron 7 of 32)	123829.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	6.46	8.3	13.12	10.05	4.5	5.96	5.31	5.5	10.62	1.51	18.09	4.7
Merged-chr6-51550164-3	chr6	51550070	51550270	+	693.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	4877.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	10.5	7.04	13.12	6.84	8.59	6.9	0.66	6.62	9.83	9.04	9.04	5.64
Merged-chr13-23524846-3	chr13	23524738	23524938	+	693.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6206.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	10.09	6.79	14.26	11.26	9.41	6.9	3.99	7.68	13.57	11.55	7.03	4.39
Merged-chr8-123036219-3	chr8	123036135	123036335	+	693.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	6049.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	12.92	6.04	10.27	11.66	5.32	3.76	1.33	4.01	9.24	9.54	14.57	4.39
Merged-chr11-4536131-3	chr11	4536027	4536227	+	693.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	L1MB8|LINE|L1	58688.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	7.27	9.06	15.97	6.03	13.09	10.98	3.65	12.08	5.9	12.55	12.56	8.14
Merged-chr1-105998539-2	chr1	105998360	105998560	+	693.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8054.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.27	4.53	1.71	3.22	3.68	0.31	3.32	1.15	3.74	2.51	2.01	3.13
Merged-chr12-55230706-2	chr12	55230605	55230805	+	693.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100109, intron 1 of 15).2	CpG	227.0	NM_001100110	100101806.0	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	7.27	16.85	3.42	2.82	11.45	14.11	9.97	2.33	18.49	12.05	7.03	5.01
Merged-chr18-67988831-2	chr18	67988718	67988918	+	693.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	55645.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.46	6.79	5.13	8.45	12.68	13.17	8.3	7.57	1.18	7.53	7.03	3.76
Merged-chr3-108416050-3	chr3	108415939	108416139	+	693.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	-545.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	8.88	5.53	10.84	4.83	12.27	10.35	9.63	6.56	12.19	5.02	12.56	10.34
Merged-chr5-64759238-3	chr5	64759159	64759359	+	693.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44264.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	10.09	8.3	13.12	11.66	3.27	4.39	7.31	14.55	11.8	8.54	12.06	3.45
Merged-chr6-16978227-3	chr6	16978058	16978258	+	693.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79717.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	1.21	4.02	3.42	2.41	1.64	3.14	1.99	3.06	4.72	7.03	6.03	12.22
Merged-chr4-141503284-1	chr4	141503184	141503384	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	35313.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	4.04	5.79	2.28	3.22	4.91	6.27	1.66	6.62	3.15	10.04	8.54	7.21
Merged-chr10-77417250-1	chr10	77417150	77417350	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	1023.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	4.85	1.01	3.99	2.41	7.36	6.27	2.33	6.2	4.52	2.01	2.51	3.13
Merged-chrX-159677458-1	chrX	159677358	159677558	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	MLTR14|LTR|ERV1	-31143.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	3.63	1.26	0.0	2.82	4.09	3.45	3.99	4.6	2.16	3.01	1.51	4.07
Merged-chr17-65656954-1	chr17	65656854	65657054	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-14750.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.63	4.02	2.28	8.85	4.5	3.14	9.97	7.4	4.33	7.03	7.03	3.45
Merged-chr16-76762629-1	chr16	76762529	76762729	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	16463.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	6.06	7.04	2.28	6.03	4.5	5.64	14.62	5.64	4.13	4.52	9.55	2.82
Merged-chr6-22343375-2	chr6	22343282	22343482	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	12699.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.23	1.76	7.99	0.8	4.5	7.84	3.99	7.57	9.05	6.03	13.06	10.65
Merged-chr15-31649842-1	chr15	31649742	31649942	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	47726.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.81	2.26	1.71	7.24	4.09	4.7	2.33	6.64	3.34	7.53	2.51	5.33
Merged-chr18-47369955-1	chr18	47369855	47370055	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1085.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.4	3.77	0.57	2.01	3.68	4.39	8.3	4.01	2.75	1.0	0.0	0.31
Merged-chr15-97519360-1	chr15	97519260	97519460	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186462.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.85	1.26	1.14	0.8	3.68	1.25	5.98	7.01	2.95	0.5	1.0	5.33
Merged-chr7-67243027-1	chr7	67242927	67243127	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20411.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	4.04	0.5	10.27	0.0	8.59	5.02	5.98	7.21	7.28	5.02	4.02	4.07
Merged-chr3-151748714-2	chr3	151748640	151748840	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133871, intron 2 of 7)	intron (NM_133871, intron 2 of 7)	1219.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	5.25	7.29	11.98	14.48	8.18	4.7	7.97	5.89	12.0	6.03	12.56	4.7
Merged-chr4-63508430-1	chr4	63508330	63508530	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12439.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	5.65	2.52	0.0	6.44	7.36	4.7	2.99	9.28	8.26	6.53	23.11	5.95
Merged-chr16-93027660-1	chr16	93027560	93027760	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-201586.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.63	0.75	2.28	2.82	4.91	4.08	2.99	3.64	6.29	13.56	1.0	3.45
Merged-chr15-76782890-1	chr15	76782790	76782990	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	35280.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.46	6.04	5.7	0.0	11.05	3.76	1.0	5.36	3.15	1.51	0.0	0.94
Merged-chr2-112392917-1	chr2	112392817	112393017	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024254, intron 1 of 9)	intron (NM_024254, intron 1 of 9)	13706.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	2.42	2.52	2.28	2.41	9.41	2.2	4.65	6.53	6.49	4.02	6.53	7.52
Merged-chr9-123504487-1	chr9	123504387	123504587	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-25266.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	3.63	4.02	6.28	7.24	11.05	4.08	1.99	5.16	14.95	6.53	4.02	6.89
Merged-chr7-35585202-1	chr7	35585102	35585302	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145840, exon 1 of 1)	exon (NM_145840, exon 1 of 1)	380.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	6.06	8.05	2.85	5.23	3.68	6.9	8.3	4.63	7.87	4.52	4.52	8.46
Merged-chr11-23048309-1	chr11	23048209	23048409	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34922.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	2.83	2.01	3.42	4.42	5.73	2.82	5.65	5.92	3.74	5.52	7.54	5.95
Merged-chr17-45570123-1	chr17	45570023	45570223	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008302, intron 6 of 10)	intron (NM_008302, intron 6 of 10)	3138.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.85	11.07	10.84	3.62	7.77	6.9	2.66	1.51	8.65	6.53	5.53	9.08
Merged-chr2-5711717-1	chr2	5711617	5711817	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	3045.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	1.62	5.53	2.28	8.45	4.5	5.96	2.99	8.97	5.11	4.02	4.52	5.33
Merged-chr17-56819757-1	chr17	56819657	56819857	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	11251.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.04	9.06	9.13	9.65	4.09	3.45	3.32	3.98	7.08	4.52	5.53	5.64
Merged-chr5-100644063-3	chr5	100643967	100644167	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30189.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.85	8.8	6.28	11.26	4.09	6.27	3.65	5.64	10.82	6.53	8.54	6.89
Merged-chr17-36015901-1	chr17	36015801	36016001	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4659.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	3.02	0.0	0.8	1.64	2.51	5.31	7.43	0.2	1.0	1.0	5.33
Merged-chr13-3775152-1	chr13	3775052	3775252	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	29166.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.42	9.06	7.42	14.08	2.45	2.82	0.66	7.29	0.79	2.01	4.52	2.82
Merged-chr15-96684400-1	chr15	96684300	96684500	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15328.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.86	0.75	1.71	2.41	12.68	7.53	2.66	5.3	0.98	2.51	6.53	3.45
Merged-chr15-91301548-2	chr15	91301433	91301633	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033633, intron 7 of 9)	B3|SINE|B2	-109526.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.42	0.75	4.56	3.22	4.91	5.96	4.65	9.84	8.06	9.04	13.57	9.71
Merged-chr19-42171273-1	chr19	42171173	42171373	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177319, intron 1 of 12)	intron (NM_177319, intron 1 of 12)	706.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	1.62	3.52	2.28	5.63	8.18	2.2	1.66	5.64	3.93	4.52	2.51	0.94
Merged-chr12-110447515-1	chr12	110447415	110447615	+	693.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135001, intron 1 of 13)	CpG	336.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	5.25	5.28	4.56	4.42	4.91	4.7	5.65	3.9	9.44	13.05	5.53	8.77
Merged-chr16-32244331-1	chr16	32244231	32244431	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	2694.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	5.25	3.27	5.7	4.42	8.59	3.14	2.33	1.85	5.11	6.03	2.01	4.7
Merged-chrX-106171341-1	chrX	106171241	106171441	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15759.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	6.86	3.02	5.13	6.84	9.82	5.64	6.98	4.54	8.46	4.02	2.01	5.33
Merged-chr8-83723545-1	chr8	83723445	83723645	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_197982)	TTS (NM_197982)	439.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	2.42	0.5	2.85	2.41	1.64	6.59	0.0	6.9	5.11	2.51	0.0	2.82
Merged-chr15-84127073-2	chr15	84126970	84127170	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3895.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	7.27	6.04	3.99	2.82	12.68	7.21	1.99	10.88	10.82	12.05	8.04	4.7
Merged-chr15-6591623-1	chr15	6591523	6591723	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	11776.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.27	1.51	1.71	0.4	6.55	7.21	3.99	5.72	4.33	5.02	5.02	5.64
Merged-chr4-40978074-2	chr4	40977983	40978183	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290448, intron 2 of 15)	intron (NM_001290448, intron 2 of 15)	7140.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	4.04	14.59	3.99	8.45	8.59	9.72	10.3	13.96	13.37	7.53	9.04	2.82
Merged-chr1-86216673-1	chr1	86216573	86216773	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	61893.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	4.44	4.78	2.85	3.62	5.32	1.88	4.98	6.28	1.18	2.01	0.0	0.94
Merged-chr4-136885537-1	chr4	136885437	136885637	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	640.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	3.63	6.04	10.27	1.61	4.5	6.27	3.99	6.81	9.24	11.05	7.54	13.16
Merged-chr13-60666135-1	chr13	60666035	60666235	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	63924.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.63	1.51	7.42	5.63	6.55	18.5	7.31	8.21	8.85	3.51	2.51	1.57
Merged-chr11-29147312-1	chr11	29147212	29147412	+	693.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027869, exon 16 of 28)	exon (NM_027869, exon 16 of 28)	16561.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.0	0.5	1.14	0.0	2.86	6.59	3.65	2.1	12.0	8.54	7.03	3.13
Merged-chr15-6067590-1	chr15	6067490	6067690	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22886.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	2.42	1.26	0.57	7.24	6.14	3.76	7.97	6.53	9.05	5.02	4.02	8.77
Merged-chr10-21556575-1	chr10	21556475	21556675	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36570.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	2.42	4.78	3.99	2.41	3.68	9.09	2.99	5.1	5.31	7.03	10.05	6.89
Merged-chr12-99468199-3	chr12	99468110	99468310	+	692.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18136.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	8.48	5.79	7.99	9.65	7.36	13.17	11.96	19.71	8.85	8.03	2.01	5.64
Merged-chr7-55970541-4	chr7	55970366	55970566	+	692.854187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	B1_Mus1|SINE|Alu	7935.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	5.25	4.78	7.42	6.84	4.5	3.76	2.66	5.27	5.31	10.54	9.04	9.08
Merged-chr12-76490983-2	chr12	76490885	76491085	+	692.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	42227.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	3.63	9.06	7.99	9.65	4.5	8.47	11.63	8.8	14.55	4.52	3.52	6.58
Merged-chr18-62185796-3	chr18	62185734	62185934	+	692.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	5734.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	12.11	8.8	6.28	7.24	10.64	16.62	7.31	8.94	8.26	16.07	10.55	6.58
Merged-chr2-157129296-3	chr2	157129198	157129398	+	692.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 2 of 16)	intron (NM_001139520, intron 2 of 16)	5924.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	10.5	8.55	4.56	6.44	8.59	12.23	6.98	7.91	9.05	10.04	18.09	5.95
Merged-chr14-121928573-3	chr14	121928467	121928667	+	692.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12793.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.85	6.54	7.42	6.84	7.36	8.15	2.33	8.24	18.88	8.54	2.01	5.01
Merged-chrX-76598619-2	chrX	76598529	76598729	+	692.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001201395, intron 1 of 1)	SYNREP_MM|Satellite|Satellite	4295.0	NM_001201395	74987.0	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	6.46	9.81	16.54	12.47	11.86	10.03	7.64	12.79	14.95	14.56	15.58	15.35
Merged-chr4-82622652-2	chr4	82622557	82622757	+	692.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114668.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	5.25	7.04	4.56	3.62	1.64	6.27	2.66	3.73	13.77	17.57	10.55	10.96
Merged-chrX-61653256-2	chrX	61653174	61653374	+	692.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-56342.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	3.23	7.04	0.57	13.67	6.55	3.76	5.65	10.09	9.44	9.04	12.56	8.77
Merged-chr17-83633026-2	chr17	83632917	83633117	+	692.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1122.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	6.46	8.05	9.7	10.46	9.82	6.59	2.99	11.1	6.69	7.03	14.07	6.58
Merged-chr1-186549408-2	chr1	186549303	186549503	+	692.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131124, intron 1 of 2)	L1MB3|LINE|L1	9278.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	2.83	7.8	7.42	7.24	6.14	4.7	11.96	16.49	4.92	7.03	8.04	2.51
Merged-chr1-192745203-2	chr1	192745086	192745286	+	692.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	26033.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	4.85	5.28	6.85	4.02	6.14	7.21	5.31	4.01	9.24	6.03	5.02	8.14
Merged-chr18-60747177-4	chr18	60747091	60747291	+	692.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348101)	promoter-TSS (NM_001348101)	-445.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	13.33	9.56	12.55	9.65	11.05	18.5	9.3	26.61	13.18	6.53	12.06	14.41
Merged-chr14-70203544-1	chr14	70203444	70203644	+	692.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011366, intron 1 of 20)	intron (NM_011366, intron 1 of 20)	1079.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	2.42	3.77	1.14	7.24	2.45	7.84	6.98	6.98	7.28	5.02	3.52	1.88
Merged-chr6-138140152-3	chr6	138140059	138140259	+	692.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-368.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	6.06	8.8	12.55	7.24	13.09	8.15	12.62	12.87	10.23	16.57	7.03	4.7
Merged-chr2-70967853-1	chr2	70967753	70967953	+	692.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 7 of 9)	B4A|SINE|B4	50521.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	1.51	2.28	2.41	0.82	0.94	1.66	2.1	2.95	2.01	4.02	3.45
Merged-chr17-48192688-1	chr17	48192588	48192788	+	692.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25431.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	2.83	0.25	1.14	2.41	8.18	10.66	9.63	5.61	3.34	13.05	10.55	2.51
Merged-chr13-103974171-1	chr13	103974071	103974271	+	692.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53585.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	2.42	4.02	11.41	8.45	6.55	6.27	10.3	7.68	9.05	19.58	11.05	7.21
Merged-chr10-4414647-1	chr10	4414547	4414747	+	692.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358796, intron 7 of 13)	intron (NM_001358796, intron 7 of 13)	14519.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.81	0.0	2.85	0.0	1.64	1.88	1.99	1.6	11.21	9.54	7.54	8.46
Merged-chr7-100503627-4	chr7	100503427	100503627	+	692.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153527, intron 7 of 7)	intron (NM_153527, intron 7 of 7)	10169.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.44	8.3	4.56	0.4	4.09	10.35	3.99	4.49	8.65	5.52	4.52	8.77
Merged-chr2-154712388-2	chr2	154712299	154712499	+	692.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55373.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.44	6.79	3.99	9.65	6.55	5.02	2.99	6.73	9.83	13.56	11.56	4.39
Merged-chr12-117469555-2	chr12	117469383	117469583	+	692.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46996.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.44	2.26	2.28	4.02	6.55	7.84	2.99	4.43	12.39	16.07	7.03	4.39
Merged-chr8-4516321-3	chr8	4516223	4516423	+	692.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026058, intron 2 of 10)	intron (NM_026058, intron 2 of 10)	22918.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	8.08	3.27	5.7	10.46	18.82	8.78	7.64	9.48	16.92	11.05	13.57	6.58
Merged-chr10-94858873-3	chr10	94858771	94858971	+	692.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 9 of 30)	intron (NM_018797, intron 9 of 30)	85707.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	14.54	9.56	12.55	22.12	2.05	5.96	8.3	10.46	10.03	3.01	7.54	8.46
Merged-chr12-52783187-1	chr12	52783087	52783287	+	692.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	83804.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	4.44	5.03	3.42	0.4	8.18	7.53	12.62	7.54	1.77	5.52	1.51	3.13
Merged-chr15-6519634-1	chr15	6519534	6519734	+	692.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60213.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.06	4.02	3.99	2.01	7.36	9.41	8.64	6.53	5.9	7.03	5.53	2.19
Merged-chr8-13758524-2	chr8	13758408	13758608	+	692.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	852.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	2.83	10.31	8.56	7.64	3.68	4.39	5.65	9.25	5.31	4.02	15.58	5.95
Merged-chr12-8348248-3	chr12	8348166	8348366	+	692.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34833.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	5.65	9.06	5.13	8.45	3.68	8.78	7.31	16.4	8.65	6.53	14.07	5.01
Merged-chr11-119079310-3	chr11	119079215	119079415	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007625, exon 5 of 5)	3' UTR (NM_007625, exon 5 of 5)	6922.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	9.29	11.32	4.56	3.62	9.0	15.05	3.65	4.6	6.29	5.52	12.06	6.27
Merged-chr17-65783393-2	chr17	65783292	65783492	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	37.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	4.04	5.53	5.13	4.02	9.41	5.64	7.97	7.65	11.41	8.03	10.05	5.33
Merged-chr11-60932927-2	chr11	60932816	60933016	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	859.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	6.46	6.79	6.85	6.03	10.23	12.23	4.98	4.54	8.26	9.54	7.03	3.45
Merged-chr4-3720545-1	chr4	3720445	3720645	+	692.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	5581.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	10.09	3.77	0.0	5.23	4.5	3.14	4.65	3.08	10.82	6.53	11.56	12.53
Merged-chr11-106032099-2	chr11	106031995	106032195	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037712, intron 12 of 12)	IAPEz-int|LTR|ERVK	-4777.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	3.42	0.0	0.0	10.03	16.28	0.0	4.52	9.54	12.06	4.7
Merged-chrX-42033306-1	chrX	42033206	42033406	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34530.0	NM_009688	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	4.44	2.77	7.42	3.62	7.77	10.98	4.65	6.06	7.47	9.54	8.04	5.01
Merged-chr5-52760434-1	chr5	52760334	52760534	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028744, intron 7 of 9)	intron (NM_028744, intron 7 of 9)	-14975.0	NM_001309445	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	4.04	1.76	11.41	8.04	6.14	5.33	2.99	5.61	1.38	2.51	4.02	0.94
Merged-chr14-121035517-1	chr14	121035417	121035617	+	692.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134082)	promoter-TSS (NM_134082)	-57.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	3.63	10.06	2.85	0.4	6.95	1.25	1.99	3.2	8.85	13.05	10.55	11.59
Merged-chr10-127194566-2	chr10	127194460	127194660	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045715)	promoter-TSS (NR_045715)	-689.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	6.06	10.56	3.42	4.42	8.18	3.45	5.98	7.07	9.64	8.03	7.54	4.07
Merged-chr11-119436653-1	chr11	119436553	119436753	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46181.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	5.25	5.53	6.28	4.02	2.86	5.96	6.31	5.83	6.49	1.51	4.02	2.19
Merged-chr9-48707654-2	chr9	48707565	48707765	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-102542.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	8.48	4.78	13.69	8.04	11.45	8.47	6.31	8.83	1.38	4.52	4.52	0.63
Merged-chr4-62405018-1	chr4	62404918	62405118	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139291, intron 1 of 3)	RMER1B|Other|Other	3605.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	6.46	4.78	2.28	4.02	2.45	5.33	5.31	7.21	1.57	1.51	0.0	1.57
Merged-chr19-53467530-2	chr19	53467431	53467631	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2735.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	2.42	8.05	9.7	4.42	6.55	2.82	6.64	8.66	2.16	1.0	1.51	0.0
Merged-chr9-59541676-5	chr9	59541546	59541746	+	692.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	2106.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	2.42	8.3	3.99	6.84	8.18	4.7	4.32	3.73	7.08	6.03	6.53	3.13
Merged-chr1-105996246-2	chr1	105996142	105996342	+	692.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	5836.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	2.83	4.53	7.99	4.42	12.68	12.23	11.29	6.0	12.19	7.03	10.05	1.88
Merged-chr1-23920921-2	chr1	23920812	23921012	+	692.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	intron (NM_001357395, intron 1 of 10)	1469.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.63	1.01	3.42	2.41	2.86	6.27	1.99	5.24	13.37	10.54	20.6	8.77
Merged-chr15-79511694-3	chr15	79511590	79511790	+	692.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4718.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	10.09	11.57	6.85	9.25	9.82	11.92	9.63	6.56	9.83	12.05	9.55	4.39
Merged-chr11-20691180-2	chr11	20691081	20691281	+	692.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252503, intron 7 of 7)	intron (NM_001252503, intron 7 of 7)	50375.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	9.29	8.8	8.56	1.61	10.23	6.9	5.65	10.71	6.88	9.04	10.55	4.07
Merged-chr13-95324390-1	chr13	95324290	95324490	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-435.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	7.27	5.79	6.85	6.03	4.5	7.84	5.65	8.78	12.0	20.59	7.54	4.07
Merged-chr4-124703544-1	chr4	124703444	124703644	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	2845.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	6.06	3.77	1.71	0.0	6.14	5.64	6.31	4.68	10.82	5.52	5.53	2.51
Merged-chr17-24583835-1	chr17	24583735	24583935	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013630, intron 26 of 45)	Lx5c|LINE|L1	33885.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	3.23	3.02	5.7	8.85	10.23	9.09	4.98	5.72	4.52	4.52	5.53	3.45
Merged-chr7-132387750-3	chr7	132387662	132387862	+	692.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-70534.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	4.44	6.54	13.12	15.69	8.18	7.53	3.99	8.94	10.03	6.03	12.06	6.27
Merged-chr3-85887626-1	chr3	85887526	85887726	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177130)	promoter-TSS (NM_177130)	-108.0	NM_177130	320302.0	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	7.27	5.03	4.56	3.22	8.59	9.41	1.33	6.7	5.51	5.02	13.06	6.89
Merged-chr18-9731098-1	chr18	9730998	9731198	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	MIRc|SINE|MIR	23450.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.04	3.27	3.42	3.62	10.23	6.59	5.98	7.18	3.74	1.51	2.51	2.51
Merged-chr18-84858338-1	chr18	84858238	84858438	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	7000.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.23	1.76	3.99	0.0	6.55	8.15	5.65	7.57	1.38	2.01	2.51	2.82
Merged-chr13-48981252-3	chr13	48981121	48981321	+	692.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13109.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	7.27	7.29	5.7	7.24	9.0	13.48	6.64	15.64	10.62	4.52	10.55	7.21
Merged-chr3-89321867-2	chr3	89321762	89321962	+	692.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010108, intron 1 of 4)	CpG	1017.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	5.65	8.55	11.41	5.63	1.23	5.33	7.64	6.79	4.52	5.52	3.52	4.07
Merged-chr1-86066930-2	chr1	86066808	86067008	+	692.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2289.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	4.85	4.53	11.98	8.85	9.0	6.59	2.66	10.65	12.0	3.01	5.02	1.88
Merged-chr6-71804287-3	chr6	71804222	71804422	+	692.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178608, intron 6 of 6)	intron (NM_178608, intron 6 of 6)	19462.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	6.46	7.8	6.85	5.63	15.14	11.29	3.32	8.07	5.9	14.06	13.57	6.58
Merged-chr5-139838657-2	chr5	139838564	139838764	+	692.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11770.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	10.9	6.29	6.28	9.65	7.36	13.17	2.66	6.39	4.92	7.53	5.02	1.57
Merged-chr10-60081253-2	chr10	60081173	60081373	+	692.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-24984.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	8.08	2.77	11.98	3.62	6.14	7.21	4.32	7.57	7.67	5.02	12.06	5.33
Merged-chr11-80301598-2	chr11	80301493	80301693	+	692.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139228, intron 1 of 8)	CpG	681.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	7.27	5.28	2.28	3.62	11.45	9.41	7.64	6.81	9.83	7.03	9.04	7.83
Merged-chr9-20493594-3	chr9	20493506	20493706	+	692.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	-860.0	NM_001110309	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	7.67	9.06	10.84	6.44	6.14	7.84	9.97	10.77	10.03	15.06	12.06	5.64
Merged-chr9-110352501-3	chr9	110352393	110352593	+	692.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	19137.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	14.13	12.32	19.97	10.86	9.82	7.84	7.31	11.66	15.93	13.05	7.03	7.83
Merged-chr11-104331619-1	chr11	104331519	104331719	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010838, exon 10 of 10)	3' UTR (NM_010838, exon 10 of 10)	100183.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	1.21	3.27	1.14	4.02	4.09	1.88	9.63	4.93	3.15	3.01	3.01	3.13
Merged-chr11-17052854-1	chr11	17052754	17052954	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029861, intron 1 of 2)	intron (NM_029861, intron 1 of 2)	920.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	3.63	2.52	1.14	3.22	8.59	0.94	2.66	6.93	4.13	5.02	4.02	2.51
Merged-chr2-84528935-3	chr2	84528824	84529024	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22051.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	11.71	4.02	3.99	12.07	6.14	5.96	6.31	9.14	9.44	4.52	10.05	3.45
Merged-chr19-61230708-2	chr19	61230606	61230806	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-2288.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.04	6.04	2.28	2.01	6.95	5.33	1.99	8.78	7.67	7.03	19.09	7.83
Merged-chr2-7653722-1	chr2	7653622	7653822	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-257524.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.02	2.01	0.0	2.41	0.0	1.88	6.31	8.07	1.77	1.0	1.0	4.7
Merged-chr7-30090917-1	chr7	30090817	30091017	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-407.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	8.88	10.06	13.69	5.23	12.27	0.94	7.64	7.15	5.51	6.53	14.07	8.46
Merged-chr10-60379788-3	chr10	60379694	60379894	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 33 of 68)	intron (NM_001252635, intron 33 of 68)	-19932.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	8.08	7.55	6.85	8.04	12.27	12.54	12.62	4.63	4.92	9.04	10.55	6.58
Merged-chr13-34076076-2	chr13	34075968	34076168	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009450, intron 3 of 3)	intron (NM_009450, intron 3 of 3)	1940.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	7.67	8.55	7.99	2.01	2.45	8.47	7.97	1.46	1.97	1.51	3.52	2.82
Merged-chr13-107646406-1	chr13	107646306	107646506	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40991.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.4	0.75	7.99	7.24	1.23	1.88	3.99	7.15	3.54	1.0	8.54	6.27
Merged-chr14-17812637-1	chr14	17812537	17812737	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	151677.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.81	2.52	2.28	6.44	3.27	5.02	4.65	8.64	9.83	13.56	5.02	6.27
Merged-chr15-97831040-2	chr15	97830940	97831140	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204276, intron 1 of 25)	CpG	727.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	10.5	4.28	5.13	4.02	7.36	4.08	8.3	4.79	6.29	5.02	2.51	5.01
Merged-chr15-7089022-1	chr15	7088922	7089122	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40550.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	5.65	3.27	6.85	2.41	7.36	5.64	6.31	5.64	4.52	3.01	4.52	4.7
Merged-chr10-123187345-1	chr10	123187245	123187445	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301628, intron 1 of 20)	intron (NM_001301628, intron 1 of 20)	9674.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	3.23	1.51	1.71	2.82	1.64	2.2	4.98	5.72	1.77	2.01	1.0	1.88
Merged-chr16-95605499-1	chr16	95605399	95605599	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18906.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	6.86	1.76	6.85	2.82	4.5	7.53	1.33	5.97	7.67	7.03	10.05	2.82
Merged-chr9-110710821-1	chr9	110710721	110710921	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028312, intron 5 of 6)	intron (NM_028312, intron 5 of 6)	31789.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	4.44	6.04	2.85	0.8	4.91	7.21	2.99	4.51	4.92	4.02	9.55	4.39
Merged-chr8-13337417-1	chr8	13337317	13337517	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1334.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.81	3.77	4.56	0.0	1.64	2.2	5.31	6.98	5.11	4.02	3.52	3.45
Merged-chr11-44395835-1	chr11	44395735	44395935	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4228.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.06	4.78	2.85	2.41	1.64	7.53	4.65	7.88	4.92	3.01	10.55	4.7
Merged-chr5-122689083-1	chr5	122688983	122689183	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038845, intron 12 of 12)	intron (NM_001038845, intron 12 of 12)	6486.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	6.86	3.27	5.13	4.42	9.82	12.23	2.99	7.96	4.92	2.51	8.54	4.7
Merged-chr17-46555498-1	chr17	46555398	46555598	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020493, exon 1 of 7)	exon (NM_020493, exon 1 of 7)	664.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	11.31	5.28	4.56	2.01	5.73	5.33	5.31	6.2	7.87	10.04	8.54	13.47
Merged-chr11-108032786-1	chr11	108032686	108032886	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	35938.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	1.62	1.76	2.28	3.22	5.73	3.76	5.31	5.75	5.7	4.02	3.52	2.19
Merged-chr3-79568811-1	chr3	79568711	79568911	+	692.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152118, exon 1 of 2)	non-coding (NR_152118, exon 1 of 2)	619.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	3.63	5.28	6.85	2.41	5.73	3.45	7.64	3.25	9.24	5.02	3.52	6.58
Merged-chr11-73109293-1	chr11	73109193	73109393	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	18698.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.81	3.02	2.28	1.61	7.36	5.02	4.65	5.52	2.36	2.01	0.5	2.51
Merged-chr7-16005168-2	chr7	16005059	16005259	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5664.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	8.08	4.02	6.85	10.46	4.5	13.48	3.65	8.38	5.31	5.02	16.08	3.76
Merged-chr11-86613175-1	chr11	86613075	86613275	+	692.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-29017.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.4	0.75	1.14	2.41	4.91	4.39	0.33	1.32	6.29	0.0	4.02	1.25
Merged-chr1-135269349-3	chr1	135269238	135269438	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 4 of 9)	PB1D10|SINE|Alu	-10866.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	8.48	8.55	12.55	4.42	7.36	11.29	7.97	8.36	13.37	10.54	9.04	3.76
Merged-chr4-12035097-1	chr4	12034997	12035197	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52860.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	3.23	0.25	2.28	3.62	2.86	1.57	6.98	5.5	4.13	5.52	2.51	7.52
Merged-chr8-68881575-1	chr8	68881475	68881675	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	1020.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	3.63	11.57	7.99	8.04	8.59	5.02	9.63	4.65	4.33	6.03	8.54	1.25
Merged-chr10-120846991-1	chr10	120846891	120847091	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	LTR41|LTR|ERVL	-10638.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	6.86	4.78	2.28	4.83	6.14	8.47	1.99	6.59	5.9	3.51	7.54	8.46
Merged-chr2-167467557-1	chr2	167467457	167467657	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304542, intron 10 of 15)	intron (NM_001304542, intron 10 of 15)	-25088.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	2.02	4.02	3.99	2.01	4.09	7.84	2.99	5.86	1.97	1.0	0.0	2.51
Merged-chr2-132903708-1	chr2	132903608	132903808	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_198029)	TTS (NM_198029)	-22846.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	5.65	5.28	2.28	0.8	4.91	2.82	5.65	6.06	3.34	2.01	2.01	2.51
Merged-chr8-35725879-2	chr8	35725782	35725982	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100677.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.04	4.78	9.13	6.84	9.82	6.27	3.99	12.2	10.03	9.04	10.05	6.58
Merged-chr9-94614136-3	chr9	94614145	94614345	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-55647.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.4	4.28	3.99	0.8	4.91	1.57	1.99	3.22	4.92	2.51	5.02	6.89
Merged-chr16-57338257-1	chr16	57338157	57338357	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-15020.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.04	6.29	6.28	5.23	1.64	6.59	2.99	5.92	4.72	4.02	4.52	1.25
Merged-chr1-54684568-1	chr1	54684468	54684668	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-126884.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	4.44	2.01	2.28	4.02	3.68	2.2	3.65	7.85	4.72	4.52	1.51	3.13
Merged-chrX-167201553-1	chrX	167201453	167201653	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7665.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	6.06	4.28	3.99	2.41	8.59	10.35	2.33	2.89	5.51	0.5	10.05	4.7
Merged-chrX-104200049-1	chrX	104199949	104200149	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077354, intron 1 of 4)	CpG	1068.0	NM_001077354	245555.0	Mm.381907	NM_001077354	ENSMUSG00000046449	Nexmif	A230051P11|C77370|C77386|KIDLIA|Xpn|mKIAA2022	neurite extension and migration factor	protein-coding	1.21	4.53	1.71	0.0	0.0	0.31	4.32	3.87	1.77	3.01	2.01	0.94
Merged-chr14-63446106-1	chr14	63446006	63446206	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9712.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	11.31	4.02	7.42	6.03	4.91	6.27	5.31	6.42	4.52	3.51	6.53	9.71
Merged-chr1-95315735-1	chr1	95315635	95315835	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	MER113|DNA|hAT-Charlie	2107.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	6.86	3.02	1.14	4.83	3.27	4.39	1.33	8.55	12.59	3.51	2.51	5.01
Merged-chr6-54019513-1	chr6	54019413	54019613	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20419.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	1.21	1.51	0.57	3.22	0.41	1.57	5.98	4.51	2.56	3.01	6.53	4.07
Merged-chr7-67234930-2	chr7	67234842	67235042	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291191, exon 11 of 11)	exon (NM_001291191, exon 11 of 11)	12326.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.83	4.02	7.99	10.86	3.27	5.02	5.31	8.83	2.95	4.52	9.55	7.83
Merged-chr4-99122582-1	chr4	99122482	99122682	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1667.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	3.23	2.52	3.42	4.02	0.82	6.59	4.32	6.22	4.72	3.01	6.03	4.39
Merged-chr2-128948366-3	chr2	128948280	128948480	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-4360.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	15.34	14.09	12.55	4.42	9.0	12.23	1.99	8.94	9.24	6.03	10.55	10.02
Merged-chr9-59282616-2	chr9	59282516	59282716	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8956.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	10.9	7.55	1.14	2.41	3.27	2.82	0.33	6.06	10.23	3.01	7.54	5.64
Merged-chr11-102438455-2	chr11	102438349	102438549	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199200, exon 8 of 8)	exon (NM_199200, exon 8 of 8)	8127.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.44	2.77	5.13	0.0	11.45	7.84	3.99	5.36	15.14	10.54	1.0	5.33
Merged-chr11-54975782-2	chr11	54975715	54975915	+	691.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12875.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.85	7.55	13.12	9.25	2.86	6.59	0.33	2.69	8.26	4.02	5.53	4.39
Merged-chr13-31347311-3	chr13	31347208	31347408	+	691.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-106222.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	5.25	9.06	17.68	10.86	12.27	8.78	14.95	20.5	8.26	6.53	9.04	9.71
Merged-chr15-27613005-3	chr15	27612911	27613111	+	691.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	17682.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	5.65	5.28	3.99	6.44	9.0	14.42	4.32	13.07	8.06	13.05	5.53	6.58
Merged-chr17-74508821-2	chr17	74508712	74508912	+	691.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	19319.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	6.86	2.77	7.42	5.63	17.18	10.03	7.31	6.64	7.47	11.05	17.08	3.76
Merged-chr5-104032629-2	chr5	104032531	104032731	+	691.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10835.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	7.67	4.78	1.14	6.03	11.86	13.17	7.31	7.15	9.44	16.57	15.07	7.83
Merged-chr4-95156955-2	chr4	95156859	95157059	+	691.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104737.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.86	6.04	2.85	7.64	5.73	9.41	6.31	10.79	5.7	5.52	11.56	5.01
Merged-chr9-45278286-2	chr9	45278233	45278433	+	691.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9184.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.46	5.03	5.13	7.24	5.73	1.88	3.32	5.5	2.75	4.52	10.55	4.7
Merged-chr3-65952125-3	chr3	65952046	65952246	+	691.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	6103.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.25	6.29	1.14	10.46	6.95	5.02	8.64	11.13	10.82	7.53	10.55	4.39
Merged-chr6-8510262-2	chr6	8510177	8510377	+	691.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133236, exon 1 of 8)	exon (NM_133236, exon 1 of 8)	677.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	22.61	7.8	11.98	10.46	7.77	9.41	6.31	10.37	10.62	14.56	10.55	11.28
Merged-chr3-87562571-3	chr3	87562473	87562673	+	691.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36995.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	7.27	5.53	5.7	6.03	8.59	15.05	1.0	6.34	13.57	7.53	13.06	11.59
Merged-chr13-34204472-3	chr13	34204367	34204567	+	691.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 4 of 10)	MIR|SINE|MIR	41503.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	6.46	7.04	15.4	16.09	8.59	6.9	6.31	10.09	10.82	5.52	16.08	6.89
Merged-chr7-101541302-3	chr7	101541181	101541381	+	691.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14521.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	10.5	2.52	10.27	6.03	8.59	14.11	0.33	10.12	12.0	14.06	8.54	8.46
Merged-chr7-98338474-2	chr7	98338396	98338596	+	691.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17288.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	4.44	8.55	6.85	7.24	6.95	6.59	6.64	7.57	4.52	3.01	7.03	6.89
Merged-chr7-140141517-3	chr7	140141426	140141626	+	691.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199301, intron 3 of 10)	intron (NM_199301, intron 3 of 10)	3962.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	13.33	5.28	10.27	6.84	11.05	5.96	8.3	13.96	8.46	9.54	6.53	5.95
Merged-chr16-85286543-2	chr16	85286504	85286704	+	691.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112897.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.23	3.52	7.99	3.22	0.0	0.0	0.0	0.31	12.0	9.04	8.04	7.21
Merged-chr12-31944043-2	chr12	31943935	31944135	+	691.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	6210.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.65	5.28	4.56	4.42	7.36	4.39	5.31	7.09	12.59	11.55	6.03	5.64
Merged-chr12-111843663-3	chr12	111843559	111843759	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011625, exon 7 of 17)	exon (NM_011625, exon 7 of 17)	29489.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	8.08	9.81	9.7	6.44	9.0	2.2	7.31	7.6	8.46	4.02	9.55	9.4
Merged-chr16-49859674-3	chr16	49859588	49859788	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4034.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.46	6.29	9.13	7.64	5.73	8.47	2.99	7.88	7.28	7.53	15.07	5.64
Merged-chrX-42540861-3	chrX	42540775	42540975	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011855, intron 29 of 32)	intron (NM_011855, intron 29 of 32)	35553.0	NM_001313691	20400.0	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	7.27	3.52	10.27	9.65	2.86	9.41	4.65	7.85	12.39	10.04	5.02	4.39
Merged-chr11-99041239-3	chr11	99041097	99041297	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	-47.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	6.86	5.53	7.99	5.23	1.23	5.64	1.66	3.36	3.54	2.51	2.01	4.07
Merged-chr11-58917099-1	chr11	58916999	58917199	+	691.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138678)	promoter-TSS (NM_138678)	-958.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	4.44	2.77	5.7	0.8	5.32	8.15	5.98	2.94	11.6	12.55	11.05	4.7
Merged-chr6-129399313-1	chr6	129399213	129399413	+	691.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	2016.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.81	8.55	5.13	3.22	1.23	0.94	2.66	3.06	8.65	13.05	7.03	5.64
Merged-chr12-111365062-1	chr12	111364962	111365162	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	L1MB8|LINE|L1	12656.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	10.9	2.52	9.13	15.69	4.09	1.57	1.99	6.31	4.33	6.03	0.5	2.82
Merged-chr3-20028472-1	chr3	20028372	20028572	+	691.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	ID_B1|SINE|B4	6838.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	4.44	2.01	3.42	4.83	6.55	13.17	8.97	6.25	5.11	3.51	6.03	5.95
Merged-chr10-5806630-3	chr10	5806551	5806751	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	9.69	9.06	5.7	13.27	6.95	11.6	6.98	9.73	6.69	7.53	8.54	8.14
Merged-chr13-44536658-2	chr13	44536567	44536767	+	691.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96940.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	8.88	7.8	5.13	4.02	3.27	9.41	7.97	7.65	6.49	6.53	1.51	0.63
Merged-chr17-83078599-2	chr17	83078523	83078723	+	691.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045094)	promoter-TSS (NR_045094)	-398.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	3.63	2.52	3.99	7.24	6.95	7.84	4.65	6.2	3.15	4.02	4.02	7.83
Merged-chr7-73539317-1	chr7	73539217	73539417	+	691.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037569)	TTS (NR_037569)	2429.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	6.46	10.82	3.42	4.02	2.45	11.6	3.65	1.93	8.65	17.07	13.06	9.4
Merged-chrX-103443963-2	chrX	103443854	103444054	+	691.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002844, intron 1 of 3)	intron (NR_002844, intron 1 of 3)	12437.0	NR_002844	22097.0	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	10.9	5.03	1.14	6.03	13.09	10.98	6.64	8.47	7.87	10.04	12.56	5.64
Merged-chr18-61126381-3	chr18	61126257	61126457	+	691.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 15 of 21)	intron (NM_001037859, intron 15 of 21)	8889.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	6.06	4.02	13.12	7.24	9.0	6.59	8.64	11.89	7.28	14.56	13.06	12.84
Merged-chr18-6470778-1	chr18	6470678	6470878	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	19868.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	3.23	1.26	4.56	2.01	4.09	6.27	3.99	5.92	2.56	1.0	3.01	2.19
Merged-chr15-95885203-1	chr15	95885103	95885303	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-55131.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.06	8.05	3.42	3.62	2.05	12.23	5.31	7.43	12.0	6.03	3.52	2.19
Merged-chr9-121995968-2	chr9	121995861	121996061	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153540)	promoter-TSS (NM_153540)	65.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	7.67	9.81	5.7	7.24	0.82	7.53	5.65	6.28	3.74	1.51	7.54	5.01
Merged-chr3-130690957-2	chr3	130690842	130691042	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	18502.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	4.04	4.53	1.14	6.44	6.55	8.15	2.66	7.6	8.85	10.04	10.05	6.27
Merged-chr2-84714294-2	chr2	84714178	84714378	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144887, intron 1 of 11)	intron (NM_144887, intron 1 of 11)	886.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	7.27	7.55	6.85	1.61	2.45	7.21	7.64	9.56	4.33	12.55	4.02	4.07
Merged-chr4-156237187-1	chr4	156237087	156237287	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021303, intron 2 of 18)	CpG-10794	1177.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	5.25	2.26	2.85	2.82	2.05	5.96	4.98	7.68	3.93	8.03	6.53	4.07
Merged-chr3-58556850-1	chr3	58556750	58556950	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001005509, intron 13 of 13)	intron (NM_001005509, intron 13 of 13)	-19786.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	6.06	9.06	10.27	13.27	0.0	0.0	0.0	0.14	8.06	8.03	10.55	7.21
Merged-chr6-53288044-1	chr6	53287944	53288144	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 1 of 10)	CpG	741.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.04	4.78	2.28	2.01	8.59	8.47	5.31	3.98	3.93	4.02	4.52	7.21
Merged-chr2-160336606-3	chr2	160336583	160336783	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9189.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	2.42	6.79	5.13	0.8	6.95	4.7	2.66	4.23	3.15	6.03	6.03	4.39
Merged-chr10-36892497-2	chr10	36892383	36892583	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-82061.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	4.85	4.02	10.27	14.88	7.36	10.35	11.96	4.09	3.54	2.01	9.55	6.89
Merged-chr1-89939664-1	chr1	89939564	89939764	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8488.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	3.63	8.8	10.27	4.83	12.68	11.29	3.32	4.71	3.93	4.52	6.03	2.51
Merged-chr9-37146755-3	chr9	37146666	37146866	+	691.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	CpG	556.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	11.71	6.04	5.13	6.84	2.05	2.51	10.3	8.27	6.49	9.54	7.03	6.58
Merged-chr4-86555236-3	chr4	86555132	86555332	+	691.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	3071.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.85	6.79	1.71	4.83	6.14	6.9	4.32	10.46	13.96	11.55	17.08	8.46
Merged-chr7-15976106-3	chr7	15976014	15976214	+	691.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081418, intron 10 of 13)	intron (NM_001081418, intron 10 of 13)	-8579.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	14.13	5.53	10.27	12.47	6.55	11.6	4.32	7.35	10.62	23.6	11.56	6.89
Merged-chr13-9011801-2	chr13	9011701	9011901	+	691.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15789.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	92.47	135.32	71.88	100.55	34.77	37.32	34.88	33.03	34.62	40.17	43.72	58.27
Merged-chr6-87998081-3	chr6	87997980	87998180	+	691.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16397.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	4.44	5.79	14.26	7.24	13.09	5.33	8.3	6.62	7.87	15.06	9.55	6.89
Merged-chr11-120660778-1	chr11	120660678	120660878	+	691.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175263)	promoter-TSS (NM_175263)	59.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	8.08	8.55	2.85	4.42	6.95	9.41	6.64	1.6	7.08	9.54	9.04	7.21
Merged-chr17-83808215-3	chr17	83808127	83808327	+	691.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 16 of 16)	intron (NM_054082, intron 16 of 16)	38563.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	12.92	9.06	12.55	11.66	7.36	7.21	5.65	11.38	13.37	17.07	11.56	9.71
Merged-chr4-9246554-2	chr4	9246455	9246655	+	691.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12A|LTR|ERVK	-22738.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	1.21	7.04	12.55	10.46	7.36	5.33	12.95	17.36	5.31	3.51	14.07	6.58
Merged-chr1-55023857-2	chr1	55023756	55023956	+	691.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031179, intron 1 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	3622.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.04	5.28	3.42	8.85	10.23	9.09	5.65	7.68	13.18	11.55	0.5	4.7
Merged-chr11-53184905-2	chr11	53184811	53185011	+	691.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177059, intron 15 of 15)	intron (NM_177059, intron 15 of 15)	-64855.0	NR_046047	790909.0	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	-	predicted gene 11186	ncRNA	8.08	5.03	10.27	10.86	10.64	13.8	1.0	8.83	4.72	5.02	3.52	4.39
Merged-chr2-152763613-2	chr2	152763544	152763744	+	691.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053091, intron 4 of 4)	B1_Mm|SINE|Alu	9471.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	1.26	1.14	0.4	7.77	3.14	4.65	5.13	6.29	7.03	3.01	7.52
Merged-chr4-71307663-2	chr4	71307560	71307760	+	691.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-772732.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.42	1.51	2.85	5.63	9.82	8.15	4.98	11.8	7.08	4.52	9.04	5.01
Merged-chr14-122109100-3	chr14	122109000	122109200	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	2018.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	10.09	2.01	6.28	13.67	3.68	4.08	4.32	9.28	7.28	4.52	9.04	11.9
Merged-chr14-75006097-3	chr14	75005975	75006175	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-9952.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.25	8.05	13.69	11.26	9.82	10.35	10.96	25.26	11.6	7.03	17.08	6.89
Merged-chr5-107725552-1	chr5	107725452	107725652	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267621, intron 1 of 6)	CpG	253.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	9.29	6.04	6.28	6.03	6.14	9.41	3.65	5.66	4.92	7.53	8.04	7.52
Merged-chr12-52390470-3	chr12	52390357	52390557	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90152.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.86	4.78	15.4	8.45	9.41	5.64	6.64	13.04	11.41	9.04	10.55	7.83
Merged-chr18-43374761-1	chr18	43374661	43374861	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291455, intron 1 of 13)	LTR33|LTR|ERVL	-1489.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.75	0.0	0.0	4.09	5.96	8.3	4.71	0.0	0.0	1.0	0.0
Merged-chr1-43264631-3	chr1	43264520	43264720	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67859.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	11.31	7.29	3.99	8.04	15.55	10.66	12.62	11.07	7.47	11.05	10.05	6.89
Merged-chr5-134540155-3	chr5	134540068	134540268	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	12266.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	13.33	6.79	16.54	8.45	9.82	10.03	13.95	7.77	7.08	8.03	18.09	8.14
Merged-chr2-128717562-1	chr2	128717462	128717662	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	18647.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.81	1.26	0.0	1.61	8.59	0.94	11.63	5.05	4.72	1.0	9.04	1.88
Merged-chr4-43420536-1	chr4	43420436	43420636	+	691.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8598.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	3.23	4.02	5.7	10.46	4.91	5.96	1.99	6.14	9.24	12.55	13.57	10.65
Merged-chr8-24923614-1	chr8	24923514	24923714	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153397, intron 3 of 21)	intron (NM_153397, intron 3 of 21)	25190.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	3.23	3.77	3.42	4.02	5.73	7.53	5.98	6.36	1.97	4.02	6.03	5.01
Merged-chr6-108733716-1	chr6	108733616	108733816	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49343.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	6.46	3.77	5.13	2.41	7.77	5.64	4.65	5.97	8.06	3.01	2.01	2.19
Merged-chr5-43384830-1	chr5	43384730	43384930	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130739.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	2.42	0.5	1.14	0.0	5.73	6.9	5.31	7.77	1.77	7.03	7.54	7.83
Merged-chr3-95140712-3	chr3	95140624	95140824	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	-1538.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	13.33	5.28	3.42	10.46	6.14	6.9	3.32	9.76	8.85	9.54	12.06	4.39
Merged-chr4-156255690-1	chr4	156255590	156255790	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110516)	promoter-TSS (NM_001110516)	-348.0	NM_001110516	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	2.02	3.77	11.98	1.21	10.23	9.09	2.33	6.2	0.2	7.53	2.51	2.51
Merged-chr10-10471305-2	chr10	10471210	10471410	+	691.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1004.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.85	2.52	5.13	7.64	11.05	10.03	7.97	15.42	6.49	12.05	8.54	4.7
Merged-chrX-36051975-2	chrX	36051874	36052074	+	691.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 44 of 52)	intron (NM_001009947, intron 44 of 52)	-60134.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	9.69	3.77	11.41	10.86	15.55	10.66	2.33	7.63	7.47	4.02	9.04	2.51
Merged-chr2-29827770-2	chr2	29827674	29827874	+	691.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026615, intron 1 of 4)	CpG	385.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	4.85	10.56	5.7	4.42	4.09	10.66	6.31	4.74	12.78	7.53	9.04	7.21
Merged-chr13-21831569-2	chr13	21831504	21831704	+	691.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175657).2	TTS (NM_175657).2	554.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	6.46	7.8	6.28	7.24	4.09	4.7	6.64	0.03	10.23	9.54	6.53	11.9
Merged-chr12-99084373-3	chr12	99084287	99084487	+	691.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78421.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	7.27	9.56	2.85	2.01	4.91	5.33	4.65	6.7	9.64	10.04	15.58	9.4
Merged-chr5-146770367-3	chr5	146770272	146770472	+	691.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	24584.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.88	2.26	1.14	15.69	8.59	4.08	22.92	18.11	9.64	11.55	14.07	6.58
Merged-chr5-32734105-2	chr5	32734016	32734216	+	691.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	12226.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.25	11.07	6.85	8.85	6.55	8.15	5.65	13.6	0.59	0.5	1.51	2.82
Merged-chr2-5597068-2	chr2	5596973	5597173	+	691.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	78973.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.63	2.26	9.7	6.84	9.41	8.15	7.64	11.38	8.65	1.51	7.03	1.88
Merged-chr4-130663815-3	chr4	130663779	130663979	+	691.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356566, intron 1 of 17)	CpG	522.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	12.52	9.31	7.42	7.24	9.41	15.68	3.32	7.82	9.24	4.52	4.52	7.52
Merged-chr4-8979156-2	chr4	8979064	8979264	+	691.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	227840.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	11.31	8.05	15.97	7.24	0.82	3.76	2.66	3.67	20.46	9.54	16.58	4.7
Merged-chr6-128805331-3	chr6	128805252	128805452	+	691.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-16711.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	9.69	2.77	2.28	10.86	6.14	16.93	7.64	5.55	12.39	12.55	25.63	10.96
Merged-chr15-38452841-1	chr15	38452741	38452941	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37706.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	4.04	2.26	1.14	4.83	7.36	2.2	5.65	5.05	2.75	5.02	2.01	4.39
Merged-chr14-63130213-1	chr14	63130113	63130313	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7751.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.81	2.52	5.7	4.02	10.23	6.9	2.66	6.73	8.85	16.57	8.54	3.45
Merged-chr11-79686935-1	chr11	79686835	79687035	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175543, intron 10 of 14)	intron (NM_175543, intron 10 of 14)	-11849.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	2.02	3.27	6.28	3.62	6.55	8.78	3.99	5.94	7.08	5.02	15.58	3.45
Merged-chr11-53628116-1	chr11	53628016	53628216	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6586.0	NM_008355	16163.0	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	2.83	4.28	3.99	5.63	6.14	8.15	5.31	5.69	6.88	7.03	7.03	3.13
Merged-chr12-98317607-1	chr12	98317507	98317707	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48972.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.81	2.01	10.84	4.83	4.5	1.57	5.31	7.51	1.57	8.54	2.51	0.63
Merged-chr17-66110867-1	chr17	66110767	66110967	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-679.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	6.46	5.03	3.42	0.8	2.45	0.0	5.65	5.05	1.57	3.01	1.0	3.76
Merged-chr1-80408729-3	chr1	80408624	80408824	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37208.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	8.48	7.29	9.13	7.24	9.41	0.31	4.65	9.64	10.82	16.07	18.09	2.82
Merged-chr4-137676300-1	chr4	137676200	137676400	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138591, intron 1 of 23)	intron (NR_138591, intron 1 of 23)	-5327.0	NM_001081155	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	3.63	4.02	2.28	0.8	4.91	2.82	0.66	2.94	10.42	11.55	1.51	4.07
Merged-chr13-101694519-1	chr13	101694419	101694619	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	CpG	-1889.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.88	6.29	5.7	6.44	3.68	2.2	2.99	5.36	4.92	4.52	7.54	3.76
Merged-chr3-89887800-1	chr3	89887700	89887900	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010559, intron 3 of 9)	intron (NM_010559, intron 3 of 9)	25396.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	2.83	6.54	0.0	8.04	2.45	6.9	1.99	4.74	4.92	6.53	3.01	2.19
Merged-chr1-166731038-1	chr1	166730938	166731138	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49193.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	3.63	7.04	1.71	3.22	6.95	6.27	1.33	7.77	5.11	6.03	11.05	7.52
Merged-chr9-3000980-1	chr9	3000880	3001080	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	37763.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	10.09	4.78	1.71	0.4	8.18	4.08	8.97	4.12	4.72	16.07	11.56	10.34
Merged-chr2-32776298-1	chr2	32776198	32776398	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	477.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	8.08	6.79	5.7	1.61	3.68	2.2	3.32	0.98	3.93	3.01	5.02	7.21
Merged-chr7-84548683-1	chr7	84548583	84548783	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	19729.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0.4	1.51	0.57	0.0	0.82	0.63	5.65	5.41	5.31	0.0	1.0	5.64
Merged-chr11-77361211-2	chr11	77361129	77361329	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	12949.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	8.08	0.5	10.84	7.64	11.05	4.08	7.31	6.59	7.08	7.03	3.01	3.76
Merged-chr11-16525094-2	chr11	16524995	16525195	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16611.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	10.5	9.06	13.69	6.44	6.14	10.03	1.99	7.6	4.33	3.01	10.55	1.57
Merged-chr17-24849330-1	chr17	24849230	24849430	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_023480, exon 1 of 1)	3' UTR (NM_023480, exon 1 of 1)	972.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	6.06	2.52	2.28	0.4	4.09	4.08	5.98	5.16	2.16	2.01	1.51	5.33
Merged-chr19-45149958-1	chr19	45149858	45150058	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021901)	promoter-TSS (NM_021901)	-757.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	6.46	5.28	13.69	6.03	0.82	2.82	1.33	3.5	16.13	7.53	9.04	8.77
Merged-chr15-53196012-1	chr15	53195912	53196112	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	150171.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.25	4.78	3.42	3.22	9.82	4.7	2.99	9.17	1.38	0.5	2.01	0.94
Merged-chr2-128762727-1	chr2	128762627	128762827	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	MTD|LTR|ERVL-MaLR	-55576.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.44	2.52	3.42	3.62	0.82	7.84	7.31	5.05	2.95	5.52	6.53	2.51
Merged-chr1-152692782-1	chr1	152692682	152692882	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	MTD|LTR|ERVL-MaLR	-57769.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	5.53	5.7	3.22	5.73	0.31	8.3	5.27	2.16	3.51	4.02	6.58
Merged-chr3-94838927-1	chr3	94838827	94839027	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	1360.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.4	0.5	0.0	0.8	2.05	9.41	3.65	5.75	7.08	2.51	8.04	0.31
Merged-chr10-80152378-1	chr10	80152278	80152478	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2696.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	6.06	6.79	5.7	1.21	8.18	10.03	7.64	6.14	7.87	7.03	7.54	7.21
Merged-chr1-134556396-2	chr1	134556294	134556494	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3784.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	6.86	6.79	5.7	3.62	6.95	6.27	1.99	7.82	11.21	7.03	7.03	5.95
Merged-chr10-36978570-1	chr10	36978470	36978670	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008229, intron 1 of 13)	RLTR31B2|LTR|ERVK	4026.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	1.62	5.28	4.56	2.01	1.64	10.98	3.99	5.83	6.1	5.52	7.03	2.82
Merged-chr17-36129563-1	chr17	36129463	36129663	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177467)	promoter-TSS (NM_001177467)	-138.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0.0	0.0	0.0	0.0	3.68	7.53	3.99	7.77	1.57	0.0	0.0	2.19
Merged-chr6-99028047-2	chr6	99027928	99028128	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	270.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	8.08	9.56	2.28	3.22	8.18	3.76	13.29	7.09	6.49	4.52	3.52	5.95
Merged-chr1-88495458-1	chr1	88495358	88495558	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14608.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.81	1.01	0.0	2.41	2.86	5.02	1.99	9.81	2.56	4.52	18.59	10.02
Merged-chr11-50074092-1	chr11	50073992	50074192	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290750, intron 3 of 7)	L1MDa|LINE|L1	4390.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	5.25	4.53	3.99	9.65	4.09	7.21	1.99	7.79	3.74	7.03	8.04	0.94
Merged-chr17-5758626-1	chr17	5758526	5758726	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40031.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.65	10.56	5.7	9.65	2.45	4.08	3.99	2.86	1.57	6.53	5.53	3.13
Merged-chrX-167230040-1	chrX	167229940	167230140	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-20822.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	6.06	8.3	5.13	5.63	10.64	6.9	12.62	10.01	13.57	8.03	11.56	8.46
Merged-chr2-58035785-1	chr2	58035685	58035885	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172855, intron 9 of 9)	intron (NM_172855, intron 9 of 9)	16967.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	2.42	5.03	5.13	2.82	4.09	7.21	3.32	5.89	4.52	4.02	9.04	2.82
Merged-chr13-9061491-1	chr13	9061391	9061591	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32390.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.63	1.26	1.14	3.22	1.64	5.64	2.99	6.06	5.31	1.0	2.51	0.94
Merged-chr5-31288342-1	chr5	31288242	31288442	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	2772.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	4.85	3.27	4.56	2.82	6.55	6.59	3.99	9.17	3.34	2.01	3.52	4.39
Merged-chr17-53579003-2	chr17	53578894	53579094	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-5132.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	1.62	2.52	1.14	4.83	4.91	1.88	3.32	5.02	7.67	3.01	11.05	6.58
Merged-chr11-60244634-1	chr11	60244534	60244734	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359810, intron 10 of 12)	MTE2a|LTR|ERVL-MaLR	-22053.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	1.62	4.28	15.4	12.07	0.0	1.57	1.99	2.72	1.77	1.0	0.0	0.0
Merged-chr13-34303605-3	chr13	34303503	34303703	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41579.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	8.08	8.55	10.27	12.87	2.05	10.66	5.98	18.76	9.05	6.03	17.08	7.83
Merged-chr3-65971817-1	chr3	65971717	65971917	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19A|LTR|ERVK	-13568.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.62	1.01	5.7	6.84	5.73	3.45	1.0	5.24	9.64	4.52	14.57	10.34
Merged-chr11-59450515-1	chr11	59450415	59450615	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356452)	promoter-TSS (NM_001356452)	470.0	NM_001205068	194952.0	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	4.04	5.03	7.42	2.01	3.68	6.9	3.65	2.24	4.52	3.51	3.01	4.7
Merged-chr2-164949671-1	chr2	164949571	164949771	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013599, intron 3 of 12)	CpG-8834	1452.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	2.02	3.27	1.14	0.8	0.41	1.88	1.99	2.64	3.15	0.5	2.01	3.13
Merged-chr2-45196170-1	chr2	45196070	45196270	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-78728.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	9.29	5.79	5.7	0.8	0.82	3.14	1.99	1.46	7.67	5.02	0.5	4.7
Merged-chr17-63393011-1	chr17	63392911	63393111	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-80038.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	1.62	1.26	7.42	3.62	9.0	1.57	1.99	5.89	5.11	5.52	10.55	4.39
Merged-chr2-145785224-1	chr2	145785124	145785324	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	-892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.23	2.01	7.99	4.02	1.64	4.08	5.31	6.31	4.52	2.01	2.01	4.39
Merged-chr5-109551318-3	chr5	109551336	109551536	+	690.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7557.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	3.23	5.03	5.13	1.61	3.68	2.2	2.99	1.65	4.33	7.53	10.05	4.7
Merged-chr10-98677004-1	chr10	98676904	98677104	+	690.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-237638.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.88	5.03	3.99	5.23	9.82	8.47	5.65	5.75	5.9	9.04	5.53	3.13
Merged-chr18-30365816-3	chr18	30365704	30365904	+	690.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92939.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	7.67	12.07	10.84	10.86	9.82	4.39	6.64	16.88	11.01	12.05	20.1	11.28
Merged-chr14-74989505-3	chr14	74989402	74989602	+	690.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14416.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	9.69	10.31	15.97	9.25	10.64	9.41	7.31	9.87	14.75	7.53	12.56	7.21
Merged-chr14-17954224-2	chr14	17954120	17954320	+	690.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-27424.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.44	4.28	5.7	6.03	9.0	7.53	11.63	18.22	5.51	2.51	15.58	8.77
Merged-chr14-19707483-2	chr14	19707395	19707595	+	690.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43762.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	8.48	8.3	14.26	3.22	4.09	15.68	4.65	6.53	7.87	2.51	6.53	0.94
Merged-chr17-74017345-2	chr17	74017235	74017435	+	690.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053188)	TTS (NM_053188)	30581.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	6.06	5.53	1.71	2.01	5.73	8.78	6.31	8.75	6.1	10.54	8.54	8.46
Merged-chr11-60930928-3	chr11	60930824	60931024	+	690.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	943.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	8.08	7.29	3.99	4.42	4.91	10.66	5.98	7.93	8.65	14.56	8.54	9.08
Merged-chr13-6002668-3	chr13	6002576	6002776	+	690.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X3_LINE|LINE|RTE-BovB	141187.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.46	6.54	5.7	4.42	4.5	0.94	6.98	9.45	8.06	7.03	15.07	7.21
Merged-chr10-123209681-1	chr10	123209581	123209781	+	690.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12662.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	5.65	4.02	5.13	4.83	7.36	4.08	3.65	5.19	2.75	2.01	3.52	3.45
Merged-chr11-34025234-3	chr11	34025148	34025348	+	690.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-21680.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	15.34	7.04	7.42	12.87	11.45	7.84	9.97	15.2	10.42	11.05	11.56	5.64
Merged-chr1-132338173-3	chr1	132338070	132338270	+	690.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22045.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	8.88	8.55	7.99	4.83	9.41	11.6	6.31	2.83	10.62	6.53	13.06	5.01
Merged-chr9-10668796-2	chr9	10668688	10668888	+	690.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	235938.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.4	1.26	2.28	4.83	10.23	3.76	5.65	24.17	7.87	9.04	20.6	10.34
Merged-chr15-8411377-2	chr15	8411278	8411478	+	690.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	33085.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.65	6.04	3.42	8.04	2.05	5.96	4.65	8.55	11.41	13.05	9.55	2.51
Merged-chr9-41129437-2	chr9	41129338	41129538	+	690.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	RSINE1|SINE|B4	28624.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.48	3.52	6.28	2.41	5.73	6.59	3.99	6.64	11.8	7.53	8.04	8.14
Merged-chr11-97540328-2	chr11	97540236	97540436	+	690.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 4 of 19)	intron (NM_018873, intron 4 of 19)	34790.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	6.46	2.77	1.14	6.44	4.09	6.59	3.32	5.41	10.23	10.54	7.54	10.65
Merged-chr17-45734168-3	chr17	45734047	45734247	+	690.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	-303.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	6.46	7.55	8.56	3.22	5.32	10.98	12.95	9.36	9.05	8.54	12.06	8.46
Merged-chrX-99002085-3	chrX	99001972	99002172	+	690.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40509.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	6.86	4.02	13.12	14.08	6.55	11.6	9.63	9.93	6.1	8.03	8.04	8.77
Merged-chr1-134053441-2	chr1	134053376	134053576	+	690.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	16222.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	4.44	3.02	7.99	10.86	4.5	7.53	4.98	6.39	15.34	10.54	10.55	6.58
Merged-chr14-60771225-3	chr14	60771123	60771323	+	690.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183175, intron 1 of 3)	L1MB2|LINE|L1	3089.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	8.88	13.08	10.84	10.05	15.55	11.92	7.31	9.62	7.47	13.56	13.06	4.39
Merged-chr13-46927019-3	chr13	46926898	46927098	+	690.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	2720.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	13.33	8.55	8.56	7.64	15.96	9.41	6.64	4.01	10.42	3.51	10.05	7.52
Merged-chr4-117918937-3	chr4	117918832	117919032	+	690.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3933.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	12.52	3.77	5.7	12.07	2.86	8.47	6.31	7.68	7.08	9.04	8.04	5.95
Merged-chr11-62847976-3	chr11	62847876	62848076	+	690.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033669, intron 1 of 12)	intron (NM_001033669, intron 1 of 12)	853.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	11.31	11.82	11.41	12.87	8.59	11.6	5.65	10.37	10.62	10.54	8.04	4.07
Merged-chr9-114852031-2	chr9	114851921	114852121	+	690.525024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7869.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	8.88	6.29	11.98	6.84	6.55	6.59	8.64	15.06	3.15	3.01	4.52	1.88
Merged-chr4-145219855-1	chr4	145219755	145219955	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011610, exon 9 of 10)	exon (NM_011610, exon 9 of 10)	-24850.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.86	0.75	5.7	4.02	10.23	6.9	1.66	3.67	5.31	5.02	9.04	10.65
Merged-chr13-45571901-1	chr13	45571801	45572001	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	64457.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	5.25	4.53	5.13	4.02	3.68	4.7	3.65	8.69	3.34	13.05	6.53	7.52
Merged-chrX-56447126-2	chrX	56447017	56447217	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7722.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	3.23	3.27	6.85	1.61	8.59	8.15	4.98	10.49	8.06	3.51	9.04	4.39
Merged-chr7-99891885-1	chr7	99891785	99891985	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	32667.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	3.63	3.27	2.28	6.44	6.55	4.7	5.31	5.58	2.95	2.01	5.02	4.07
Merged-chr12-37251190-1	chr12	37251090	37251290	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	9551.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	1.21	2.52	6.85	5.63	4.5	6.27	6.31	8.41	1.97	9.54	11.05	4.07
Merged-chr1-16637712-1	chr1	16637612	16637812	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-18374.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	4.85	2.77	1.71	1.61	9.0	2.82	4.98	5.36	5.7	9.04	10.55	6.58
Merged-chr6-70874587-2	chr6	70874483	70874683	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30068.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	3.23	5.79	8.56	3.22	8.59	10.66	5.31	10.37	10.82	10.04	8.54	6.89
Merged-chr8-85488112-1	chr8	85488012	85488212	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-4505.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.4	0.5	0.0	0.0	6.14	8.15	0.0	6.59	2.16	3.51	2.51	2.82
Merged-chr9-55244270-2	chr9	55244184	55244384	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	35349.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	14.54	5.28	9.7	4.83	12.27	7.53	8.97	10.68	11.21	7.53	7.54	5.33
Merged-chr4-133130016-2	chr4	133129899	133130099	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-634.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.46	14.84	7.99	4.83	7.36	9.41	7.64	2.47	5.51	6.53	1.51	7.52
Merged-chr10-127527608-2	chr10	127527539	127527739	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	-5195.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	9.29	5.53	1.14	14.08	0.82	3.76	2.33	3.7	1.57	9.04	8.54	4.39
Merged-chr2-166630968-2	chr2	166630877	166631077	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	66455.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	6.06	4.78	11.98	9.25	8.59	6.9	1.33	8.64	2.95	1.51	2.51	1.57
Merged-chr17-83137936-2	chr17	83137828	83138028	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59703.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	6.46	3.52	9.13	10.05	17.18	8.47	9.3	15.73	5.7	7.03	12.06	7.52
Merged-chr4-59354626-1	chr4	59354526	59354726	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	MLT1D|LTR|ERVL-MaLR	84007.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.44	5.53	2.85	1.61	3.27	3.14	4.65	5.55	2.56	5.02	1.51	3.45
Merged-chr11-22695323-3	chr11	22695170	22695370	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	164465.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.46	5.03	3.99	4.83	11.86	9.72	15.94	4.99	5.31	8.03	11.56	2.19
Merged-chr3-103858362-2	chr3	103858269	103858469	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1426.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	10.9	7.29	2.28	5.23	11.45	4.08	5.65	5.21	9.05	15.06	6.03	9.71
Merged-chr9-3025151-1	chr9	3025051	3025251	+	690.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	13592.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.46	1.01	4.56	1.21	9.41	3.14	0.66	0.0	12.98	8.54	6.03	12.22
Merged-chr16-35870225-2	chr16	35870115	35870315	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1167.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	3.23	7.55	5.13	2.01	8.59	5.96	2.33	2.64	9.05	7.03	4.02	5.95
Merged-chr9-15035045-1	chr9	15034945	15035145	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10433.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.81	2.52	10.27	0.8	6.95	8.15	2.99	5.3	5.11	3.01	3.52	3.45
Merged-chrX-95658487-3	chrX	95658399	95658599	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289697)	promoter-TSS (NM_001289697)	10.0	NM_001289696	245522.0	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding	8.88	4.28	3.42	9.65	10.23	8.47	4.98	13.93	10.42	13.05	31.66	7.83
Merged-chr19-37070069-3	chr19	37069980	37070180	+	690.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 7 of 10)	L1MA5|LINE|L1	-103763.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	8.08	5.79	10.27	14.48	8.18	6.59	8.3	12.45	10.62	6.03	11.05	10.65
Merged-chr9-49120168-3	chr9	49120051	49120251	+	690.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17372.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	12.52	4.28	16.54	12.87	9.0	5.33	14.62	9.28	5.7	4.52	14.57	5.64
Merged-chr3-21825085-3	chr3	21824988	21825188	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-251564.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	9.69	6.29	13.12	2.41	11.86	8.47	6.98	15.79	8.85	11.55	12.06	5.01
Merged-chr10-25200174-3	chr10	25200083	25200283	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347460)	promoter-TSS (NM_001347460)	-13.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	9.29	6.54	3.99	11.26	10.64	10.66	11.96	12.28	8.26	11.55	14.57	4.39
Merged-chr11-6523841-3	chr11	6523757	6523957	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-2899.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	8.88	6.79	5.7	4.02	6.55	8.15	9.63	1.63	16.52	13.05	13.57	3.76
Merged-chr5-123830015-3	chr5	123829925	123830125	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35491.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.06	10.56	9.7	4.02	9.0	7.53	2.99	10.65	13.37	10.04	7.03	2.82
Merged-chr18-39442518-3	chr18	39442452	39442652	+	690.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	44693.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.27	10.31	5.13	0.4	14.73	28.22	8.3	6.98	13.37	10.04	9.55	8.14
Merged-chr5-8058261-2	chr5	8058156	8058356	+	690.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080974, intron 2 of 7)	intron (NM_001080974, intron 2 of 7)	1714.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	8.48	2.26	0.0	14.48	11.45	6.59	8.97	9.95	9.24	4.02	7.03	10.02
Merged-chr10-122806098-3	chr10	122806056	122806256	+	690.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	126841.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	8.48	12.83	5.7	5.23	5.32	5.64	1.66	6.14	8.26	6.53	5.53	6.27
Merged-chr5-112994459-2	chr5	112994356	112994556	+	690.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	21082.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	8.88	9.56	7.42	7.24	9.41	6.27	1.33	12.5	5.31	9.04	14.07	5.01
Merged-chr8-40408141-1	chr8	40408041	40408241	+	690.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15674.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.0	2.01	2.28	3.62	6.55	9.09	5.31	9.56	1.57	0.5	2.01	2.51
Merged-chr2-5041022-3	chr2	5040920	5041120	+	690.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 5 of 13)	intron (NM_001356487, intron 5 of 13)	23097.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	8.08	5.28	13.69	14.48	6.14	3.14	8.3	8.05	15.74	8.54	7.54	5.33
Merged-chr19-41242191-3	chr19	41242103	41242303	+	690.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133352, intron 5 of 14)	intron (NM_133352, intron 5 of 14)	21801.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.27	5.79	8.56	12.47	15.14	9.41	16.28	8.38	9.05	7.53	10.05	9.4
Merged-chr9-100731980-3	chr9	100731834	100732034	+	690.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 3 of 33)	MTC|LTR|ERVL-MaLR	88486.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	5.65	5.79	8.56	4.02	10.23	5.64	3.65	8.13	6.69	7.03	5.53	10.34
Merged-chr12-108170650-3	chr12	108170530	108170730	+	690.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	8654.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	8.08	8.8	7.42	20.11	10.23	5.33	4.65	11.19	8.65	5.02	10.05	9.08
Merged-chr6-136742972-2	chr6	136742875	136743075	+	690.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	38767.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	6.86	11.57	6.28	2.01	6.55	6.9	10.96	7.07	7.08	2.01	11.56	4.7
Merged-chr4-63214382-2	chr4	63214306	63214506	+	690.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1006.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	5.65	2.77	1.14	0.8	5.73	0.63	11.96	6.81	3.93	4.52	2.51	8.77
Merged-chr8-117345378-2	chr8	117345286	117345486	+	690.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3784.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.85	2.77	7.42	5.63	6.55	8.47	8.64	9.22	8.06	9.04	5.53	4.07
Merged-chr13-35087841-2	chr13	35087742	35087942	+	690.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79962.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	4.85	4.02	12.55	9.65	11.45	6.27	7.64	4.63	9.64	1.0	5.53	3.13
Merged-chr4-133176216-3	chr4	133176125	133176325	+	690.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-19430.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	10.5	1.26	11.41	6.44	11.45	8.47	4.65	10.49	8.26	6.53	12.06	12.22
Merged-chr1-84933707-3	chr1	84933668	84933868	+	690.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	1315.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.81	4.02	4.56	8.04	4.5	4.08	5.31	1.12	6.1	11.05	4.02	8.14
Merged-chr1-105356581-3	chr1	105356480	105356680	+	690.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151538, exon 1 of 2)	non-coding (NR_151538, exon 1 of 2)	130.0	NM_178779	320311.0	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	3.63	6.29	9.13	12.47	3.68	3.76	6.64	8.38	5.31	1.51	5.53	10.02
Merged-chr9-40872222-3	chr9	40872112	40872312	+	690.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1915.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	2.42	4.78	5.13	8.04	4.09	8.15	7.64	2.92	15.74	12.05	14.07	10.65
Merged-chr15-5517594-2	chr15	5517407	5517607	+	690.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21189.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.04	1.26	2.85	1.61	4.5	2.82	13.29	4.18	4.72	2.01	5.02	5.33
Merged-chr10-118970817-3	chr10	118970726	118970926	+	690.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43683.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	6.86	7.04	5.7	13.67	8.18	24.77	8.64	5.52	15.14	12.55	19.09	10.34
Merged-chr14-55689741-2	chr14	55689667	55689867	+	690.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-7950.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	4.44	8.3	5.7	3.62	2.45	16.62	5.98	6.98	10.62	16.07	8.54	8.46
Merged-chr15-41973475-2	chr15	41973378	41973578	+	690.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103758.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	10.9	8.55	15.97	7.64	6.14	7.21	6.64	7.54	5.7	7.03	10.05	6.89
Merged-chr2-148535781-2	chr2	148535691	148535891	+	690.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92256.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	4.44	2.77	1.14	3.22	2.05	4.39	5.31	5.21	8.85	18.08	16.08	8.77
Merged-chr9-102867100-1	chr9	102867000	102867200	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042607, intron 2 of 14)	intron (NM_001042607, intron 2 of 14)	32180.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	5.65	6.54	4.56	6.44	3.27	7.21	6.64	6.79	4.72	2.51	12.06	5.33
Merged-chr2-6716696-2	chr2	6716600	6716800	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4962.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	8.48	3.02	3.42	10.05	5.32	4.7	2.99	6.45	9.24	0.0	4.02	4.07
Merged-chrX-36902918-3	chrX	36902805	36903005	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029891)	promoter-TSS (NM_029891)	-6.0	NM_029891	77286.0	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	5.65	7.04	2.85	1.21	4.5	8.78	9.97	4.21	10.03	6.03	6.03	7.21
Merged-chr15-30616491-1	chr15	30616391	30616591	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-422635.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.42	6.54	2.28	0.8	11.05	8.47	3.99	4.88	7.47	4.02	2.01	5.33
Merged-chr4-59332496-2	chr4	59332437	59332637	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	72486.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	1.62	5.79	2.28	7.24	2.86	0.63	9.3	7.43	5.51	3.51	6.53	2.19
Merged-chr12-12247998-1	chr12	12247898	12248098	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14141.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	9.29	13.58	5.13	8.85	1.64	15.05	2.33	4.96	3.34	8.54	0.0	1.88
Merged-chr6-99095761-2	chr6	99095676	99095876	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67478.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.67	6.04	0.0	3.22	6.55	5.02	5.65	7.91	7.47	8.54	9.55	1.88
Merged-chr5-92091848-1	chr5	92091748	92091948	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-8104.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	8.08	5.28	10.27	7.24	6.95	9.41	8.64	5.92	9.44	8.54	8.54	9.71
Merged-chr15-25237865-1	chr15	25237765	25237965	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	175899.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.04	6.29	10.27	14.48	1.23	0.0	1.33	2.97	1.18	4.02	2.01	0.63
Merged-chr1-91299236-3	chr1	91299168	91299368	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	930.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.44	5.79	7.99	6.84	6.55	7.53	6.31	8.33	11.41	10.04	9.04	8.77
Merged-chr10-59899747-2	chr10	59899644	59899844	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20153.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.81	7.29	7.99	3.22	9.82	5.64	1.99	6.67	9.64	6.03	12.06	2.51
Merged-chr10-44777401-2	chr10	44777305	44777505	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-289809.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.42	3.02	4.56	4.83	3.68	9.09	3.65	5.66	12.19	3.51	4.02	10.02
Merged-chr15-6339960-1	chr15	6339860	6340060	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40171.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	1.21	1.51	7.99	0.8	2.45	1.25	6.31	5.72	2.75	2.51	2.51	1.88
Merged-chr11-49201277-2	chr11	49201184	49201384	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2216.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	8.08	8.8	5.7	6.84	9.82	6.9	5.65	7.43	11.21	1.0	7.03	5.01
Merged-chr17-67451199-1	chr17	67451099	67451299	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96708.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.83	2.01	3.99	6.03	4.5	6.9	1.99	4.99	5.7	5.02	5.02	1.57
Merged-chr14-122475406-2	chr14	122475221	122475421	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045046)	promoter-TSS (NR_045046)	-63.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	3.63	2.01	0.57	4.42	3.27	0.63	4.65	4.07	3.54	1.0	4.02	3.76
Merged-chr15-83128863-1	chr15	83128763	83128963	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-6062.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	8.48	4.78	0.0	1.61	2.86	6.27	1.33	3.36	13.37	9.54	3.01	7.52
Merged-chr2-84494277-1	chr2	84494177	84494377	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	12596.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.23	2.52	3.99	3.22	4.5	4.08	5.98	4.29	3.93	1.0	10.05	6.89
Merged-chr14-20378470-1	chr14	20378370	20378570	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360365, exon 8 of 11)	exon (NM_001360365, exon 8 of 11)	10440.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	4.85	7.29	4.56	4.02	3.27	2.82	0.33	2.75	9.64	8.54	14.57	0.94
Merged-chr8-126567100-2	chr8	126567004	126567204	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26332.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.04	4.28	6.28	5.63	8.59	7.21	1.0	3.25	8.46	4.02	2.01	7.21
Merged-chr6-97396331-1	chr6	97396231	97396431	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62955.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.65	2.77	1.71	2.82	9.0	6.27	1.33	6.34	7.08	4.02	8.04	5.64
Merged-chr1-60860681-1	chr1	60860581	60860781	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48344.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.23	6.54	2.28	3.22	4.09	8.78	1.99	2.72	6.88	10.04	8.54	2.51
Merged-chr5-139324181-1	chr5	139324081	139324281	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	1283.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	7.27	3.77	5.13	1.61	2.45	6.9	3.99	5.41	7.28	8.54	10.55	6.89
Merged-chr10-41261850-1	chr10	41261750	41261950	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133999, intron 10 of 22)	intron (NM_133999, intron 10 of 22)	41391.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	6.46	9.31	10.84	4.02	4.5	0.94	1.33	4.43	8.46	3.01	15.58	3.45
Merged-chr17-34091084-1	chr17	34090984	34091184	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_046183, intron 3 of 4)	B3A|SINE|B2	-1295.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	11.71	7.8	1.14	1.21	1.23	2.51	0.0	1.6	8.65	13.56	6.53	3.45
Merged-chr3-48308627-1	chr3	48308527	48308727	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2A1|LINE|L1	-281868.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	3.23	0.0	2.28	1.61	8.18	0.63	4.98	5.69	0.0	0.5	3.52	2.82
Merged-chr10-13429926-2	chr10	13429827	13430027	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	-40957.0	NM_001195066	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.65	4.28	10.27	1.61	4.91	8.15	1.99	13.65	11.8	2.01	7.03	7.21
Merged-chr1-191244422-1	chr1	191244322	191244522	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19968.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.4	7.04	6.28	2.01	10.23	5.96	5.65	6.2	2.56	8.03	5.02	1.88
Merged-chr5-53087555-1	chr5	53087455	53087655	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38202.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	3.23	2.26	4.56	6.03	2.05	5.96	4.65	10.4	6.49	4.52	6.53	2.51
Merged-chr6-67124281-1	chr6	67124181	67124381	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86874.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.25	7.04	2.28	10.05	0.0	5.02	5.98	7.35	3.15	2.51	6.53	6.89
Merged-chr4-107922133-2	chr4	107922049	107922249	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1440.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	8.48	10.31	7.99	4.02	9.0	6.59	3.32	10.51	5.31	6.03	5.02	2.82
Merged-chr10-122987953-3	chr10	122987846	122988046	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2222.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	9.69	8.55	14.83	9.25	8.59	13.48	5.98	9.62	9.64	9.54	11.56	6.27
Merged-chr1-57430918-1	chr1	57430818	57431018	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24244.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.23	5.28	2.28	2.41	4.09	9.09	3.65	6.11	3.93	3.01	5.53	2.51
Merged-chr16-70333287-1	chr16	70333187	70333387	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	AT_rich|Low_complexity|Low_complexity	19338.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.81	2.52	1.14	0.8	2.05	0.31	1.33	1.49	12.59	10.04	8.54	2.82
Merged-chr3-30508474-1	chr3	30508374	30508574	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361034, intron 1 of 16)	CpG	1201.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	5.25	3.77	4.56	10.05	9.0	10.66	8.3	6.79	2.95	6.03	9.04	6.89
Merged-chr9-5333604-2	chr9	5333493	5333693	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-11883.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	8.88	3.77	7.42	11.66	6.14	5.96	4.98	7.71	12.59	5.02	8.54	8.46
Merged-chr2-5529036-1	chr2	5528936	5529136	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	147010.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.63	8.3	14.83	4.42	3.27	5.02	8.97	7.07	3.93	12.55	7.54	7.21
Merged-chr14-120362749-3	chr14	120362615	120362815	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56263.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.02	4.53	11.98	8.45	8.59	8.15	15.28	21.87	7.67	7.03	7.03	3.76
Merged-chr16-43506436-1	chr16	43506336	43506536	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-86240.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	7.67	2.52	1.14	4.02	6.95	4.7	3.99	8.16	4.13	1.51	5.02	4.39
Merged-chr5-30711803-2	chr5	30711704	30711904	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356949, exon 1 of 3)	5' UTR (NM_001356949, exon 1 of 3)	240.0	NM_023047	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	2.83	7.04	8.56	2.82	2.86	8.47	7.31	6.31	10.03	4.52	12.56	5.01
Merged-chr15-31364183-1	chr15	31364083	31364283	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	3576.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.44	1.51	1.14	0.0	0.82	2.2	4.65	1.93	0.39	0.5	0.5	1.88
Merged-chr11-67559168-1	chr11	67559068	67559268	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	26170.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.0	1.14	0.0	1.64	4.7	7.97	5.47	5.11	5.52	8.04	6.89
Merged-chr9-102981005-1	chr9	102980905	102981105	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27484.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	2.42	2.77	5.13	2.01	0.82	10.03	3.65	6.03	4.72	3.51	4.02	2.19
Merged-chr5-4934707-1	chr5	4934607	4934807	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-176491.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.44	3.52	3.99	1.21	8.18	5.02	3.32	6.56	1.18	3.51	3.52	3.76
Merged-chr3-144587289-1	chr3	144587189	144587389	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	L1MB3|LINE|L1	16862.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	2.83	2.52	4.56	2.82	6.55	2.82	1.66	8.55	3.93	1.51	3.52	1.88
Merged-chr10-19992045-1	chr10	19991945	19992145	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	57519.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	2.83	2.01	3.42	1.61	8.59	6.59	1.99	6.03	8.46	10.04	7.03	4.7
Merged-chr10-83101615-1	chr10	83101515	83101715	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	116118.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	1.21	3.77	0.0	4.83	2.05	3.14	4.98	9.64	0.39	4.02	1.51	1.25
Merged-chr15-98776489-2	chr15	98776415	98776615	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011718, intron 3 of 4)	CpG	1635.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	4.85	6.29	1.71	2.01	8.18	6.9	5.31	5.86	5.31	4.02	4.02	2.19
Merged-chr6-145857648-2	chr6	145857542	145857742	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_024469)	TTS (NM_024469)	7778.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	4.44	7.55	8.56	3.62	6.55	8.47	2.66	11.78	5.31	7.03	8.04	4.39
Merged-chr5-139288594-3	chr5	139288502	139288702	+	689.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	35105.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	8.08	4.02	9.13	6.03	13.09	8.78	5.98	8.61	8.65	1.51	13.57	3.76
Merged-chr11-64615348-3	chr11	64615262	64615462	+	689.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-178688.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	9.69	5.53	6.85	13.67	4.91	18.19	16.28	8.16	9.05	13.05	10.05	6.27
Merged-chr16-24964518-3	chr16	24964417	24964617	+	689.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-95122.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.44	7.29	7.99	10.46	13.09	9.72	6.64	15.9	14.36	3.51	11.05	12.22
Merged-chr19-33122788-2	chr19	33122674	33122874	+	689.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34338.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	6.86	1.51	3.42	2.82	4.91	6.59	6.31	7.12	11.01	4.02	9.55	6.27
Merged-chrX-35897858-2	chrX	35897763	35897963	+	689.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	9031.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	12.92	5.28	9.7	13.67	8.59	3.14	5.31	5.89	3.54	9.54	6.53	7.52
Merged-chr3-57695905-2	chr3	57695807	57696007	+	689.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-3370.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	11.71	10.31	6.85	11.26	3.27	6.9	3.32	3.45	7.67	7.03	3.52	0.94
Merged-chr13-55028586-2	chr13	55028500	55028700	+	689.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011307, exon 15 of 15)	exon (NM_011307, exon 15 of 15)	-7215.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	10.5	10.56	10.27	5.63	2.05	1.25	2.99	6.2	9.24	2.51	12.56	6.27
Merged-chr8-120664729-3	chr8	120664597	120664797	+	689.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	3415.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	4.85	6.54	11.41	9.65	6.95	9.72	8.3	9.9	7.08	6.03	16.58	5.64
Merged-chr11-107025795-3	chr11	107025650	107025850	+	689.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2473.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	6.06	8.8	16.54	4.02	4.5	3.14	9.3	4.96	8.65	9.54	5.53	5.64
Merged-chr19-24556240-3	chr19	24556141	24556341	+	689.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008846)	promoter-TSS (NM_008846)	-369.0	NM_008846	18719.0	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	7.67	9.56	11.98	18.1	7.36	8.15	4.65	8.21	4.72	10.04	14.57	4.39
Merged-chr6-5174549-3	chr6	5174406	5174606	+	689.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011134, intron 7 of 8)	intron (NM_011134, intron 7 of 8)	19440.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	7.67	5.53	1.14	4.02	8.18	21.01	3.65	8.69	5.51	4.02	3.01	5.95
Merged-chr7-34229535-3	chr7	34229445	34229645	+	689.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008155, intron 1 of 17)	intron (NM_008155, intron 1 of 17)	791.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	6.46	6.04	8.56	7.24	9.82	16.31	8.97	13.37	9.24	4.52	6.53	7.52
Merged-chr7-19029463-2	chr7	19029361	19029561	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360713, intron 3 of 22)	intron (NM_001360713, intron 3 of 22)	5084.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	8.48	5.79	3.42	4.02	7.36	5.64	3.99	3.31	9.44	4.02	9.55	9.71
Merged-chr5-122154762-1	chr5	122154662	122154862	+	689.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3517.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	2.42	4.28	2.28	0.0	2.05	5.96	0.66	3.73	15.34	9.04	11.05	6.89
Merged-chr15-89339877-3	chr15	89339761	89339961	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5388.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	4.85	6.79	13.69	12.87	9.0	6.9	5.31	7.99	12.19	9.54	8.54	6.89
Merged-chr19-10041592-2	chr19	10041567	10041767	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_021890, exon 1 of 12)	5' UTR (NM_021890, exon 1 of 12)	119.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	5.25	4.28	6.28	4.42	9.0	1.57	3.99	3.42	1.38	4.52	2.01	1.57
Merged-chr10-56107347-2	chr10	56107278	56107478	+	689.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163833, intron 1 of 1)	intron (NM_001163833, intron 1 of 1)	461.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	4.85	4.78	6.85	11.26	5.32	8.47	8.64	6.53	4.72	6.53	12.56	6.58
Merged-chr6-116459341-2	chr6	116459258	116459458	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1820.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	5.65	7.29	9.13	8.45	13.91	8.15	1.99	7.57	2.95	3.51	10.05	7.52
Merged-chr6-17284085-2	chr6	17283979	17284179	+	689.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	2894.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	7.67	2.26	0.57	0.4	10.23	9.09	8.64	5.89	9.05	6.03	10.55	1.25
Merged-chr10-111226685-1	chr10	111226585	111226785	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175489, intron 3 of 23)	intron (NM_175489, intron 3 of 23)	61883.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.44	3.27	2.28	0.8	9.0	5.33	2.66	5.02	6.1	2.01	11.05	4.39
Merged-chr2-164487260-3	chr2	164487107	164487307	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048229)	promoter-TSS (NM_001048229)	330.0	NM_001048228	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	6.86	7.55	3.99	4.42	8.18	6.9	4.65	6.56	8.46	5.52	9.04	2.82
Merged-chr3-100420077-1	chr3	100419977	100420177	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6328.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.23	6.04	10.84	5.23	7.36	6.59	7.31	15.36	4.72	1.51	9.04	6.58
Merged-chr5-27206394-1	chr5	27206294	27206494	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-55541.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	1.62	1.76	11.41	7.24	7.36	6.9	8.64	6.36	4.52	2.01	9.55	1.25
Merged-chr1-131116132-3	chr1	131116025	131116225	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18282.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.25	7.29	7.42	7.24	9.41	9.41	8.3	2.86	23.01	14.06	19.09	7.52
Merged-chr18-77949704-3	chr18	77949594	77949794	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 2 of 43)	intron (NM_001195633, intron 2 of 43)	11227.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.25	6.54	11.41	13.67	7.36	7.53	5.31	7.37	15.14	7.03	14.57	7.52
Merged-chr4-129884236-1	chr4	129884136	129884336	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21990.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	3.23	4.78	0.0	12.87	9.41	3.14	6.98	5.64	4.52	12.05	9.55	5.95
Merged-chr17-86906328-3	chr17	86906205	86906405	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11043.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	8.08	5.28	0.57	4.83	1.64	4.7	3.32	6.2	9.44	5.02	16.58	6.27
Merged-chr17-86300864-2	chr17	86300768	86300968	+	689.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-13690.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.65	5.28	10.27	2.82	8.59	8.47	8.3	6.2	7.28	7.03	10.05	7.21
Merged-chr18-11658316-2	chr18	11658233	11658433	+	689.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 1 of 18)	B1_Mur1|SINE|Alu	984.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.06	4.02	15.4	2.01	8.59	10.98	2.66	7.91	13.57	9.54	11.05	8.46
Merged-chr10-75499513-3	chr10	75499436	75499636	+	689.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17845.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	7.67	8.55	7.42	8.85	10.23	5.02	15.28	6.42	8.85	7.03	13.06	6.58
Merged-chr1-64597710-3	chr1	64597588	64597788	+	689.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	19480.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	11.31	9.31	4.56	12.07	1.64	4.08	4.32	4.35	3.74	7.53	7.54	6.58
Merged-chr19-42147377-2	chr19	42147274	42147474	+	689.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-15.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	7.27	5.53	1.71	6.84	7.77	10.03	12.95	9.7	8.85	5.52	12.56	3.45
Merged-chr6-83013714-2	chr6	83013615	83013815	+	689.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	19756.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	8.88	8.55	6.85	20.91	8.18	6.9	7.64	18.62	1.18	0.0	1.0	1.57
Merged-chr14-71218834-2	chr14	71218735	71218935	+	689.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-32438.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	8.48	8.3	9.13	8.85	20.46	23.2	9.3	6.14	0.39	0.0	0.0	0.0
Merged-chr1-55822812-2	chr1	55822720	55822920	+	689.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108421.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.85	5.53	8.56	1.21	11.45	9.09	9.3	16.51	8.46	14.06	9.04	5.33
Merged-chr9-65547914-3	chr9	65547818	65548018	+	689.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32169.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.48	13.58	7.42	8.85	10.23	7.53	8.3	4.07	6.29	7.53	11.56	3.13
Merged-chr5-67943388-2	chr5	67943308	67943508	+	689.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038182)	promoter-TSS (NR_038182)	-327.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	3.23	3.52	6.28	5.63	6.55	6.27	9.63	13.09	9.05	9.04	15.58	7.52
Merged-chr2-48930486-2	chr2	48930390	48930590	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149356, intron 6 of 13)	intron (NR_149356, intron 6 of 13)	18777.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	5.25	4.53	1.14	8.85	7.36	3.45	6.98	6.87	7.87	4.02	10.55	1.88
Merged-chrX-52913364-2	chrX	52913258	52913458	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290546, intron 1 of 8)	intron (NM_001290546, intron 1 of 8)	1144.0	NM_001290546	70998.0	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	6.06	5.28	5.7	4.42	3.27	4.7	0.0	6.11	19.67	17.57	4.52	7.52
Merged-chr5-135551125-2	chr5	135551033	135551233	+	689.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6011.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.86	13.33	6.85	7.64	5.73	9.09	5.98	4.21	6.69	4.52	5.02	7.83
Merged-chr11-69052966-1	chr11	69052866	69053066	+	689.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-6809.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	5.65	5.79	7.42	4.83	3.68	5.96	2.33	3.98	11.41	10.54	19.09	11.9
Merged-chr8-121116612-1	chr8	121116512	121116712	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013519, exon 1 of 1)	5' UTR (NM_013519, exon 1 of 1)	441.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	4.85	4.78	7.99	1.21	4.5	6.27	3.99	5.21	2.56	4.52	3.52	7.21
Merged-chr16-9132970-2	chr16	9132870	9133070	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41C|LTR|ERV1	302870.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	1.62	2.26	3.42	1.61	4.09	7.84	5.98	6.14	11.41	13.05	9.55	5.01
Merged-chr16-38721621-1	chr16	38721521	38721721	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8586.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	2.42	4.02	5.13	0.8	10.23	4.7	4.98	6.7	1.18	0.5	2.51	1.25
Merged-chr6-38954853-2	chr6	38954773	38954973	+	689.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	(CACCAT)n|Simple_repeat|Simple_repeat	35887.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.46	7.29	15.4	5.23	1.64	2.51	1.33	2.24	14.75	5.52	2.01	7.83
Merged-chr17-51288923-2	chr17	51288824	51289024	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	RLTR53_Mm|LTR|ERVK	10936.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	4.44	5.28	3.99	2.01	2.05	9.41	2.33	4.71	11.41	17.57	16.08	2.19
Merged-chr6-22325830-2	chr6	22325707	22325907	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138587, intron 5 of 9)	intron (NM_138587, intron 5 of 9)	30274.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	2.83	6.54	3.99	1.61	7.36	12.86	6.98	10.54	9.24	8.03	17.59	3.76
Merged-chr15-101188221-3	chr15	101188135	101188335	+	689.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-5634.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	10.9	6.04	4.56	5.23	10.64	9.41	2.99	4.43	11.21	7.53	19.6	5.95
Merged-chr3-97231449-2	chr3	97231350	97231550	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4086.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	8.08	4.53	4.56	5.23	3.27	7.53	3.99	5.41	6.49	9.04	9.55	11.59
Merged-chr8-128454909-1	chr8	128454809	128455009	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	95668.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	1.21	3.02	11.98	2.01	6.95	5.33	1.66	6.03	4.92	2.51	3.52	2.82
Merged-chr12-102182083-1	chr12	102181983	102182183	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	53356.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	4.04	2.01	1.71	3.62	8.18	0.63	5.65	5.55	1.77	6.53	1.51	2.19
Merged-chr4-35105492-3	chr4	35105394	35105594	+	689.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-46561.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	5.65	6.04	3.42	12.87	6.95	7.53	14.95	16.79	7.08	13.05	8.04	10.34
Merged-chr9-61337316-3	chr9	61337239	61337439	+	689.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35027.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	10.9	15.09	20.54	2.01	4.5	9.09	4.65	3.28	13.18	18.58	6.03	2.51
Merged-chr14-121000686-1	chr14	121000586	121000786	+	689.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34888.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.0	1.26	0.0	2.41	0.82	0.31	1.66	2.86	8.46	12.05	14.57	12.53
Merged-chr11-94086955-2	chr11	94086851	94087051	+	689.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025428, intron 10 of 26)	(TTTTG)n|Simple_repeat|Simple_repeat	42746.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.23	0.0	0.0	0.0	10.64	6.9	9.3	4.09	10.42	13.56	13.06	6.89
Merged-chr17-28702185-3	chr17	28702091	28702291	+	689.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	9623.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	13.33	9.06	14.83	4.83	6.95	6.9	2.33	7.21	7.87	6.53	14.07	7.83
Merged-chr2-167188969-3	chr2	167188829	167189029	+	689.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008420)	promoter-TSS (NM_008420)	-111.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	8.48	4.28	9.7	4.02	7.77	9.72	7.97	6.79	9.24	11.05	9.04	10.96
Merged-chr2-26561856-3	chr2	26561767	26561967	+	689.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19189.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	12.11	6.04	10.27	3.22	11.86	12.86	2.99	6.76	10.23	18.08	12.56	7.21
Merged-chr3-52990260-2	chr3	52990173	52990373	+	689.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026225, intron 15 of 18)	intron (NM_026225, intron 15 of 18)	26950.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	10.5	7.8	9.7	9.65	1.23	17.56	2.66	7.29	8.65	6.03	17.59	5.95
Merged-chr14-52083294-3	chr14	52083192	52083392	+	689.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016884, intron 3 of 8)	intron (NM_016884, intron 3 of 8)	13977.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	10.5	8.05	14.83	11.66	27.82	12.23	7.64	15.73	9.64	10.54	11.56	8.46
Merged-chr2-27503838-2	chr2	27503736	27503936	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-11311.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.23	2.77	3.42	2.82	6.55	6.9	7.64	7.26	6.1	7.03	12.06	8.46
Merged-chr2-31596694-2	chr2	31596575	31596775	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290548, intron 6 of 18)	intron (NM_001290548, intron 6 of 18)	-15746.0	NR_105964	102466214.0		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	4.04	5.03	6.85	4.02	15.55	8.47	2.66	9.25	8.65	4.52	9.55	7.83
Merged-chr2-163756004-2	chr2	163755896	163756096	+	689.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5757.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	11.31	7.29	12.55	24.53	9.0	8.78	14.62	40.51	1.18	0.5	0.0	1.88
Merged-chr19-42166347-2	chr19	42166249	42166449	+	689.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	8.88	8.3	5.13	6.84	7.36	6.27	7.31	6.81	5.7	10.54	6.53	6.58
Merged-chr18-61098374-2	chr18	61098289	61098489	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3B|LINE|L1	-7183.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.23	6.79	10.27	2.41	8.18	7.21	5.65	9.31	9.05	4.52	5.02	7.21
Merged-chr7-45010174-2	chr7	45010093	45010293	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	2294.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	2.02	5.79	0.57	7.64	7.77	5.96	9.3	8.66	5.31	4.52	11.05	9.4
Merged-chr18-67390007-1	chr18	67389907	67390107	+	689.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-724.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	2.83	6.04	5.13	6.44	5.32	5.64	1.33	3.84	10.82	5.52	5.02	6.58
Merged-chr11-118457894-1	chr11	118457794	118457994	+	689.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2899.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	4.04	1.51	1.14	3.62	8.18	6.59	4.32	4.99	12.19	5.02	4.02	5.95
Merged-chr2-12418877-3	chr2	12418779	12418979	+	689.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355537, intron 1 of 13)	CpG	581.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	6.06	7.55	10.84	8.45	8.59	6.27	4.32	8.52	8.65	11.05	9.04	9.08
Merged-chr17-27588516-1	chr17	27588416	27588616	+	689.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-22789.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	13.73	11.07	9.7	6.44	2.45	2.51	0.0	2.58	6.29	8.54	14.57	5.64
Merged-chr10-127655463-3	chr10	127655364	127655564	+	689.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009284, exon 13 of 22)	exon (NM_009284, exon 13 of 22)	11239.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	7.27	10.56	21.11	14.08	7.36	6.27	2.66	7.04	7.67	9.04	9.04	6.89
Merged-chr17-47766205-2	chr17	47766111	47766311	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-19533.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.46	4.53	5.7	4.83	2.45	7.84	3.99	11.89	11.8	9.54	17.59	5.01
Merged-chr14-26640109-3	chr14	26640000	26640200	+	689.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	B1_Mur4|SINE|Alu	1966.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	9.29	11.32	6.28	4.83	8.59	2.82	1.99	3.95	9.05	10.04	16.08	6.58
Merged-chr4-21775648-2	chr4	21775536	21775736	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-634.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	2.83	2.52	1.14	4.02	8.59	6.27	2.66	6.14	9.05	7.53	23.62	8.77
Merged-chr6-50685234-2	chr6	50685157	50685357	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30864.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.81	4.28	1.14	2.82	10.23	5.64	4.32	6.25	12.19	14.56	9.04	4.39
Merged-chr18-13006535-2	chr18	13006458	13006658	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	-432.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	4.04	7.8	2.28	4.42	6.55	10.03	1.99	9.31	8.85	11.55	7.54	4.07
Merged-chr1-131678222-2	chr1	131678120	131678320	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10475.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.65	4.53	8.56	10.05	5.73	3.14	8.3	7.88	11.21	8.54	21.1	5.64
Merged-chr5-24077509-3	chr5	24077406	24077606	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23084.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	8.88	7.55	5.7	4.83	9.41	7.53	4.32	7.12	11.41	5.02	17.08	5.95
Merged-chr12-8635772-3	chr12	8635706	8635906	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36740.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	4.04	7.04	5.13	10.86	4.5	7.21	4.32	8.78	10.82	5.02	9.55	5.95
Merged-chr14-66282789-3	chr14	66282673	66282873	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1721.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.86	6.54	8.56	6.84	11.86	11.92	6.64	9.79	9.83	7.53	9.04	5.95
Merged-chr7-4796188-3	chr7	4796093	4796293	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	3228.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	10.09	10.31	5.7	8.85	9.41	10.98	7.64	7.26	12.39	13.05	11.56	5.33
Merged-chr16-11317558-3	chr16	11317461	11317661	+	689.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011608, intron 2 of 2)	L1MA9|LINE|L1	3752.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	11.71	8.8	13.12	8.85	13.09	8.78	5.98	8.1	5.7	7.03	5.53	8.46
Merged-chr7-122925290-3	chr7	122925207	122925407	+	689.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	45152.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	11.71	6.04	19.4	8.04	12.27	4.39	6.64	5.64	12.0	2.51	10.05	5.01
Merged-chr17-74414814-2	chr17	74414735	74414935	+	689.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252478, intron 10 of 13)	intron (NM_001252478, intron 10 of 13)	19227.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	5.25	11.57	7.99	10.86	4.91	7.84	9.3	8.92	6.69	2.01	7.54	1.57
Merged-chr14-50897609-3	chr14	50897532	50897732	+	689.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4377.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	7.27	8.05	9.7	10.86	9.82	4.7	4.32	7.99	8.46	6.53	13.57	9.4
Merged-chr2-30554039-3	chr2	30553947	30554147	+	689.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-40997.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	8.88	3.52	13.69	9.65	18.82	11.29	6.64	6.79	11.6	10.04	13.57	3.76
Merged-chr4-143389416-2	chr4	143389313	143389513	+	689.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5028.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	5.65	7.04	0.0	2.82	9.41	8.78	8.64	2.3	10.82	6.53	11.05	8.77
Merged-chr5-81137306-3	chr5	81137183	81137383	+	689.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	MTD|LTR|ERVL-MaLR	115690.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	6.06	2.52	10.27	21.72	9.0	1.88	1.33	5.8	12.0	10.04	15.07	7.83
Merged-chr4-150589562-1	chr4	150589462	150589662	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62612.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.25	3.02	1.14	4.42	8.18	3.45	1.33	5.55	6.69	3.01	5.02	3.76
Merged-chr7-127410726-1	chr7	127410626	127410826	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3904.0	NM_001167832	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	4.04	5.79	2.28	4.83	4.5	6.9	2.66	5.24	7.67	9.04	7.03	6.27
Merged-chr2-103059459-1	chr2	103059359	103059559	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	14054.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.42	2.52	2.28	8.04	3.27	5.02	6.31	5.19	6.88	2.51	15.58	3.45
Merged-chr8-35607912-1	chr8	35607812	35608012	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-18892.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	1.62	1.01	2.28	4.02	6.14	2.51	4.65	9.48	1.38	3.01	14.57	2.19
Merged-chr14-7851924-2	chr14	7851829	7852029	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	33972.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	7.27	3.77	4.56	4.83	11.45	5.33	8.64	9.48	6.88	3.51	9.55	4.39
Merged-chr4-137863095-1	chr4	137862995	137863195	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	858.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.02	1.26	4.56	1.21	0.41	5.96	1.33	2.16	3.54	1.0	0.0	2.82
Merged-chr6-28949462-1	chr6	28949362	28949562	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73157.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	5.25	3.77	1.71	2.82	1.23	6.27	4.65	4.88	3.74	8.03	3.01	3.13
Merged-chr2-48814773-1	chr2	48814673	48814873	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007396, exon 1 of 11)	exon (NM_007396, exon 1 of 11)	664.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	1.62	8.55	1.14	2.41	2.86	3.76	6.31	1.26	10.82	5.02	15.58	5.01
Merged-chr16-43966937-1	chr16	43966837	43967037	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12113.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.81	1.76	5.7	8.45	5.32	2.2	4.65	3.93	1.18	1.0	3.52	3.13
Merged-chr4-56133483-1	chr4	56133383	56133583	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-601008.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.85	2.26	5.7	4.83	4.5	10.66	10.96	5.94	5.31	5.02	10.05	6.27
Merged-chr13-9826415-1	chr13	9826315	9826515	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-61094.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	2.02	0.0	0.57	0.0	1.23	3.45	2.66	2.3	11.01	1.51	5.02	7.83
Merged-chr5-135743609-1	chr5	135743509	135743709	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172541, intron 1 of 11)	intron (NM_172541, intron 1 of 11)	563.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	3.63	4.78	1.14	0.8	2.86	6.9	0.0	1.68	5.31	0.5	3.52	2.82
Merged-chr11-86687542-1	chr11	86687442	86687642	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	3461.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	7.27	3.77	3.42	6.44	6.14	7.84	0.66	1.26	5.51	6.53	5.02	4.39
Merged-chr11-29707954-1	chr11	29707854	29708054	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10609.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	7.27	2.52	2.28	2.41	7.36	6.9	6.31	6.62	4.92	8.03	7.03	8.46
Merged-chr16-31285367-1	chr16	31285267	31285467	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10090.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	2.02	1.51	7.99	6.84	2.05	1.25	3.65	11.24	5.31	3.51	12.56	7.52
Merged-chr4-155469077-1	chr4	155468977	155469177	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001253856)	promoter-TSS (NM_001253856)	-37.0	NM_001253856	69671.0	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	4.04	2.01	5.7	1.61	2.86	7.53	2.33	5.69	3.15	7.03	5.02	1.25
Merged-chr5-139331878-1	chr5	139331778	139331978	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6414.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	8.48	3.02	5.7	4.83	5.73	10.03	1.66	7.37	2.16	11.55	9.55	3.45
Merged-chr5-102067125-1	chr5	102067025	102067225	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	2796.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.21	5.53	2.28	2.01	6.55	2.82	2.33	2.69	7.67	1.0	11.05	4.07
Merged-chr11-55209859-2	chr11	55209745	55209945	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5505.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	7.67	8.55	3.99	2.82	6.55	7.21	4.32	8.36	2.75	12.05	9.04	4.07
Merged-chr12-111551244-1	chr12	111551144	111551344	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10298.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	10.09	7.8	0.0	2.01	3.27	5.02	0.0	1.91	4.52	1.0	2.01	0.31
Merged-chr6-98329591-1	chr6	98329491	98329691	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	13163.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	1.62	2.52	0.0	3.22	1.64	3.14	5.98	5.89	11.8	9.54	16.58	4.07
Merged-chr10-39402764-2	chr10	39402652	39402852	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	MTC|LTR|ERVL-MaLR	32953.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	2.52	3.42	8.04	8.59	3.76	9.63	6.64	14.55	6.03	7.54	9.08
Merged-chr3-27735353-1	chr3	27735253	27735453	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24901.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.85	3.52	6.85	0.0	2.45	3.76	12.95	5.58	4.72	10.54	4.52	2.51
Merged-chr17-80252922-1	chr17	80252822	80253022	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198942, intron 15 of 22)	intron (NM_198942, intron 15 of 22)	28471.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.81	0.0	1.14	0.0	4.5	1.57	6.64	4.6	7.28	4.02	5.02	3.45
Merged-chr10-111412207-1	chr10	111412107	111412307	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61020.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.23	2.77	2.28	3.62	2.45	2.51	4.65	6.17	7.47	9.04	6.03	3.45
Merged-chr12-85393697-1	chr12	85393597	85393797	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18980.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.04	2.01	8.56	5.23	4.91	6.9	3.99	8.05	6.1	3.01	1.0	5.64
Merged-chr1-64308174-1	chr1	64308074	64308274	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186785.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.04	3.77	6.85	12.07	4.91	5.64	4.65	11.92	7.08	7.53	8.54	12.84
Merged-chr15-34239679-1	chr15	34239579	34239779	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033521, intron 1 of 6)	intron (NM_033521, intron 1 of 6)	1653.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	6.46	6.04	6.28	7.64	0.0	6.59	2.66	7.79	6.1	1.0	9.04	3.45
Merged-chr14-64667178-1	chr14	64667078	64667278	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	14647.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	1.62	5.03	0.0	0.8	0.0	1.25	4.98	8.16	2.56	0.0	2.01	1.88
Merged-chr13-97474676-1	chr13	97474576	97474776	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-8025.0	NR_110430	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.81	1.51	2.28	4.83	0.82	5.96	1.33	2.52	7.08	6.53	13.06	8.77
Merged-chr4-136470744-1	chr4	136470644	136470844	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	CpG	983.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.86	3.02	1.14	2.01	1.23	6.27	0.66	7.43	4.52	8.03	6.03	5.95
Merged-chr2-102181649-1	chr2	102181549	102181749	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	4811.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	1.21	0.5	0.0	0.0	7.36	10.03	6.98	5.86	1.97	5.52	3.52	1.88
Merged-chr6-125494604-1	chr6	125494504	125494704	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007657, exon 1 of 8)	exon (NM_007657, exon 1 of 8)	156.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	7.27	2.01	4.56	7.24	4.5	0.63	5.31	1.63	2.95	3.51	4.52	1.88
Merged-chr7-101455193-1	chr7	101455093	101455293	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152194)	promoter-TSS (NR_152194)	-869.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	6.06	3.52	0.0	5.63	7.36	7.84	1.99	6.9	3.54	2.01	1.0	1.88
Merged-chr5-76486318-1	chr5	76486218	76486418	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033501, intron 1 of 2)	intron (NR_033501, intron 1 of 2)	2241.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	4.04	0.0	6.85	5.23	1.64	8.15	5.65	5.05	5.7	8.54	4.02	4.7
Merged-chr11-87436505-1	chr11	87436405	87436605	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	8914.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.04	2.77	6.85	4.83	3.27	0.94	0.66	2.52	13.96	9.04	12.56	4.39
Merged-chr10-121488336-1	chr10	121488236	121488436	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-12086.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	5.03	1.14	3.62	7.36	8.15	5.98	4.77	6.88	2.51	6.03	5.95
Merged-chr5-100707498-1	chr5	100707398	100707598	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_152803, intron 3 of 11)	Lx8b|LINE|L1	12218.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.0	9.56	7.99	3.22	0.82	1.88	1.99	3.11	3.15	2.01	2.01	0.31
Merged-chr2-59612577-2	chr2	59612496	59612696	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	CpG	554.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	8.88	9.06	5.7	2.41	7.36	10.03	12.29	3.59	3.74	12.55	11.56	3.13
Merged-chr5-115528359-1	chr5	115528259	115528459	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	21683.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	2.02	6.54	9.13	0.0	4.91	8.15	0.33	6.76	5.51	7.03	5.02	1.88
Merged-chr1-77515942-1	chr1	77515842	77516042	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-854.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	4.04	1.01	2.28	6.03	11.86	3.14	8.3	5.89	1.97	4.52	1.0	7.21
Merged-chr2-118923023-2	chr2	118922931	118923131	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001045523, exon 7 of 7)	3' UTR (NM_001045523, exon 7 of 7)	-3466.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	4.04	10.82	5.7	9.65	3.68	8.47	1.66	7.26	7.08	9.54	8.04	5.33
Merged-chr5-110479352-1	chr5	110479252	110479452	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30849.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	5.25	4.02	8.56	10.05	7.36	6.27	3.65	7.26	7.08	8.54	10.05	3.13
Merged-chr7-123364559-1	chr7	123364459	123364659	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	5356.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.63	3.52	2.28	1.21	2.45	3.76	1.99	1.23	1.57	1.0	0.0	0.63
Merged-chr13-100453887-1	chr13	100453787	100453987	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1023.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.42	3.02	10.27	13.27	0.82	7.21	1.99	3.25	9.24	5.52	7.03	8.77
Merged-chr18-24152122-2	chr18	24152020	24152220	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30301.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	4.04	4.78	8.56	12.87	5.32	8.78	3.65	13.74	4.52	0.5	10.05	3.76
Merged-chr17-34969571-1	chr17	34969471	34969671	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010479, exon 1 of 1)	3' UTR (NM_010479, exon 1 of 1)	2585.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	5.25	4.78	0.0	6.44	1.23	12.23	0.0	4.21	3.34	1.0	0.0	2.19
Merged-chr1-181316800-1	chr1	181316700	181316900	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35828.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	3.63	4.53	3.99	6.84	4.91	6.9	4.65	6.5	4.33	4.52	9.55	9.08
Merged-chr12-102690035-2	chr12	102689940	102690140	+	688.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-5020.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	5.25	2.77	6.85	5.23	9.41	10.66	4.65	6.95	7.47	13.05	10.05	5.95
Merged-chr17-12880340-2	chr17	12880256	12880456	+	688.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4322.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	4.85	7.29	6.85	3.62	10.64	6.9	6.31	7.71	7.67	10.54	16.58	9.08
Merged-chr1-37555763-3	chr1	37555673	37555873	+	688.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14757.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	9.69	5.03	14.83	8.85	4.09	8.15	8.3	10.01	8.46	3.51	16.58	10.34
Merged-chr5-67404572-3	chr5	67404477	67404677	+	688.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164806, intron 3 of 4)	intron (NM_001164806, intron 3 of 4)	23222.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	14.54	7.55	6.85	12.87	6.95	8.78	5.65	11.89	7.67	7.03	2.51	5.95
Merged-chr2-58198710-2	chr2	58198608	58198808	+	688.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34734.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	3.63	3.02	1.14	14.48	10.64	7.21	4.98	9.42	6.69	5.02	12.56	6.58
Merged-chr10-84646777-3	chr10	84646688	84646888	+	688.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027423, intron 9 of 27)	intron (NM_027423, intron 9 of 27)	24351.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	2.42	7.29	8.56	10.05	4.09	5.96	6.98	4.4	4.13	7.53	9.55	6.27
Merged-chr5-150178398-2	chr5	150178294	150178494	+	688.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81536.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.81	0.0	4.56	0.0	2.05	1.88	4.98	5.55	17.51	15.57	12.56	4.39
Merged-chr16-76321696-2	chr16	76321610	76321810	+	688.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	51339.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.23	2.52	6.28	7.64	6.14	9.41	5.31	7.29	8.06	7.03	10.55	4.7
Merged-chr14-76674117-3	chr14	76673995	76674195	+	688.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3473.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.81	5.03	13.12	9.65	7.77	4.39	5.98	12.84	9.05	8.03	9.04	8.46
Merged-chrX-103521437-3	chrX	103521344	103521544	+	688.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24056.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	10.5	12.07	6.85	2.01	5.32	5.96	3.65	7.32	11.8	10.04	14.57	5.33
Merged-chr12-38781115-3	chr12	38781034	38781234	+	688.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 2 of 11)	intron (NM_001347379, intron 2 of 11)	1052.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.08	8.3	2.28	7.64	3.27	5.64	16.61	11.05	7.67	9.54	8.54	5.95
Merged-chr19-3688681-2	chr19	3688585	3688785	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2121.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	6.46	4.02	2.85	8.45	6.55	4.39	3.65	6.25	8.26	5.02	10.05	8.77
Merged-chr17-71311875-1	chr17	71311775	71311975	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357336)	promoter-TSS (NM_001357336)	-319.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	8.08	3.52	7.99	0.0	7.36	7.84	5.65	5.5	1.97	6.03	1.51	6.58
Merged-chr18-12796138-2	chr18	12796036	12796236	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 3 of 13)	Lx7|LINE|L1	23771.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	6.06	5.28	8.56	10.05	6.95	6.27	2.66	9.0	10.42	4.52	14.07	5.95
Merged-chr6-34690981-2	chr6	34690868	34691068	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 3 of 13)	URR1A|DNA|hAT-Charlie	-18476.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.81	0.0	0.0	6.44	4.09	7.84	3.65	7.21	8.85	9.54	10.05	9.71
Merged-chrX-101260678-2	chrX	101260591	101260791	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033362)	TTS (NM_001033362)	3301.0	NM_001033362	245536.0	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	1.62	8.55	3.99	2.82	4.91	4.08	12.29	2.8	5.7	10.04	4.52	4.07
Merged-chr13-60698190-2	chr13	60698088	60698288	+	688.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	L1M5|LINE|L1	88176.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.85	4.78	13.12	11.26	9.41	5.96	3.32	7.01	8.85	1.51	4.02	1.57
Merged-chr4-101716827-2	chr4	101716727	101716927	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122899)	promoter-TSS (NM_001122899)	-580.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	2.83	2.01	7.99	0.0	5.73	12.23	7.31	6.59	15.14	15.06	10.05	2.51
Merged-chr8-83158614-2	chr8	83158524	83158724	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6728.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.65	7.04	5.7	4.02	10.23	17.25	5.98	6.14	9.44	11.55	5.53	6.27
Merged-chrX-133610659-3	chrX	133610565	133610765	+	688.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001105245, intron 5 of 5)	intron (NM_001105245, intron 5 of 5)	-77115.0	NR_153117	102632590.0	Mm.403836	NR_153117	ENSMUSG00000096978	Gm26851	-	predicted gene, 26851	ncRNA	12.52	8.3	9.7	10.46	13.09	8.78	16.61	25.04	8.06	8.54	15.07	9.4
Merged-chr3-95954391-3	chr3	95954283	95954483	+	688.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25126.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	12.11	7.55	9.13	9.25	11.45	15.68	3.99	15.73	8.65	13.05	9.55	9.4
Merged-chr3-100419352-3	chr3	100419264	100419464	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7041.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	11.31	5.53	1.14	7.64	10.64	0.63	3.32	7.46	9.83	3.51	7.54	9.08
Merged-chrX-96117573-1	chrX	96117473	96117673	+	688.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	21528.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	2.02	4.78	4.56	6.84	16.36	7.84	8.3	7.4	4.52	17.07	4.52	4.7
Merged-chr7-88185304-1	chr7	88185204	88185404	+	688.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92781.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.42	5.28	2.28	7.24	8.59	3.14	7.97	19.37	5.7	5.02	14.57	9.4
Merged-chr17-31297835-3	chr17	31297703	31297903	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242427, intron 1 of 19)	intron (NM_001242427, intron 1 of 19)	1579.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	8.88	7.04	5.7	6.44	9.41	9.41	3.65	6.56	7.47	7.53	16.58	5.01
Merged-chr15-95768954-3	chr15	95768871	95769071	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17380.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	8.48	3.27	11.41	5.63	14.32	8.47	10.63	10.88	7.67	4.52	14.57	6.58
Merged-chr16-94371605-3	chr16	94371491	94371691	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019543)	promoter-TSS (NM_019543)	-576.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	4.85	7.04	7.99	2.01	9.41	4.7	3.65	6.76	10.03	5.02	10.55	7.83
Merged-chr15-80034520-1	chr15	80034420	80034620	+	688.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19712.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	2.02	1.01	1.14	0.8	4.09	0.63	5.98	2.61	8.85	10.54	13.57	8.77
Merged-chr15-25834647-1	chr15	25834547	25834747	+	688.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8651.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.85	4.28	0.0	0.4	4.91	5.64	5.31	4.71	1.77	6.53	6.03	5.01
Merged-chr1-134202259-2	chr1	134202176	134202376	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291930, exon 2 of 2)	3' UTR (NM_001291930, exon 2 of 2)	8828.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	2.83	5.79	2.28	7.64	8.18	10.35	3.32	3.53	12.0	7.53	12.06	6.27
Merged-chr13-31801391-2	chr13	31801300	31801500	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5246.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	4.04	2.77	3.42	6.44	8.18	8.47	6.64	7.65	7.47	4.52	11.05	5.64
Merged-chr1-127781072-2	chr1	127780962	127781162	+	688.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028399, intron 2 of 8)	MIRb|SINE|MIR	6898.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	8.88	7.55	9.7	4.02	13.09	7.53	4.98	7.09	7.08	8.03	9.55	6.89
Merged-chr6-54078396-2	chr6	54078289	54078489	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	38457.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.65	6.04	7.99	8.04	2.05	5.64	2.33	13.57	9.24	10.04	15.07	7.52
Merged-chr6-34754676-2	chr6	34754584	34754784	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145575, intron 4 of 11)	intron (NM_145575, intron 4 of 11)	-25748.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	5.25	6.04	6.28	2.82	5.73	7.84	7.31	8.64	11.41	11.05	11.56	8.46
Merged-chr15-82138736-2	chr15	82138648	82138848	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137170, intron 5 of 5)	intron (NR_137170, intron 5 of 5)	-8521.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	13.33	5.03	6.28	6.84	5.32	10.66	2.66	7.77	10.03	14.56	12.56	11.9
Merged-chr6-134259764-2	chr6	134259675	134259875	+	688.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-136554.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.63	7.04	9.7	4.02	17.18	6.9	2.99	7.51	5.11	7.03	5.02	3.13
Merged-chr13-12589192-2	chr13	12589105	12589305	+	688.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026184, intron 6 of 15)	B3|SINE|B2	23322.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	7.27	5.79	5.13	6.44	12.27	6.59	8.3	6.84	11.41	21.59	8.54	3.45
Merged-chr16-84735975-3	chr16	84735874	84736074	+	688.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-672.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	15.34	7.04	11.98	10.05	8.18	5.02	1.99	6.81	13.96	21.09	15.07	8.77
Merged-chr15-76247381-3	chr15	76247299	76247499	+	688.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	592.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	7.27	6.04	9.13	4.02	4.09	16.93	5.65	2.55	14.36	9.54	13.06	4.39
Merged-chr13-95893065-3	chr13	95892969	95893169	+	688.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.44	4.53	10.84	10.86	10.23	8.78	6.64	9.34	8.65	10.04	8.54	8.77
Merged-chr13-112769966-1	chr13	112769866	112770066	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-30811.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	1.71	0.4	4.91	2.82	3.99	6.34	1.38	4.02	0.0	0.0
Merged-chr6-58990609-1	chr6	58990509	58990709	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	33893.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	2.02	1.26	4.56	2.82	5.73	3.14	5.65	6.87	1.77	4.52	3.52	3.45
Merged-chr1-166149569-1	chr1	166149469	166149669	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	19348.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	1.62	1.51	1.14	2.41	9.41	4.7	2.33	5.89	3.15	1.0	2.51	1.25
Merged-chr2-154902309-1	chr2	154902209	154902409	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9403.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	4.04	1.51	1.71	0.8	11.86	8.47	2.99	5.05	5.7	3.51	4.52	0.63
Merged-chr2-148682303-3	chr2	148682203	148682403	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	1183.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	4.44	8.3	5.7	8.85	4.09	1.88	5.98	5.38	13.57	4.02	20.6	7.21
Merged-chr12-55506140-2	chr12	55506048	55506248	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13501.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.08	3.77	4.56	4.83	9.82	10.03	2.33	5.78	13.77	12.55	9.55	7.52
Merged-chr6-51557448-1	chr6	51557348	51557548	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	12155.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.04	2.77	1.14	0.0	6.55	5.64	3.32	5.86	7.28	9.04	3.01	4.07
Merged-chr3-19411357-1	chr3	19411257	19411457	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97238.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	4.44	5.03	3.42	10.86	6.95	3.14	5.65	5.5	3.74	4.02	5.02	1.88
Merged-chr15-91180819-1	chr15	91180719	91180919	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 3 of 9)	MTD|LTR|ERVL-MaLR	11188.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.02	0.5	0.0	0.4	6.55	1.25	7.31	4.65	10.82	4.52	4.52	3.45
Merged-chr2-161177902-1	chr2	161177802	161178002	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68816.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	2.42	2.77	0.0	1.61	4.91	6.59	4.32	5.66	4.33	3.01	9.04	6.89
Merged-chr14-63196053-2	chr14	63195960	63196160	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2535.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	6.86	5.79	1.14	3.22	7.77	6.27	1.33	4.65	3.15	9.04	12.56	6.89
Merged-chr1-130918749-1	chr1	130918649	130918849	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7453.0	NM_021380	58181.0	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	2.42	6.79	1.14	4.83	9.0	8.78	6.31	5.19	4.92	4.02	21.1	3.13
Merged-chrX-48256186-1	chrX	48256086	48256286	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028276)	promoter-TSS (NM_028276)	-748.0	NM_028276	72554.0	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	2.42	0.75	3.99	5.23	8.18	4.7	5.98	5.58	9.05	4.02	9.55	2.51
Merged-chr18-69588611-3	chr18	69588506	69588706	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	242446.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.04	8.55	3.42	6.84	5.73	8.15	2.33	9.14	8.46	9.04	12.56	6.27
Merged-chr8-75106621-2	chr8	75106583	75106783	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-2826.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.08	9.56	3.42	0.0	5.73	10.66	0.0	0.2	3.74	4.02	4.02	3.13
Merged-chr10-18917207-2	chr10	18917113	18917313	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72142.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	6.46	6.54	5.13	9.25	2.45	1.88	1.99	13.01	13.96	4.02	19.6	8.77
Merged-chr7-48913066-1	chr7	48912966	48913166	+	688.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-31470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	7.27	3.02	15.97	7.24	6.55	4.39	7.97	2.55	12.39	10.04	8.54	8.77
Merged-chr1-143998814-4	chr1	143998757	143998957	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009061)	TTS (NM_009061)	5292.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	2.83	5.53	9.13	6.03	14.73	6.27	2.66	3.9	6.88	4.52	8.54	10.65
Merged-chr15-100129381-2	chr15	100129288	100129488	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-25008.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.88	2.77	5.7	10.46	6.55	1.57	8.3	6.98	12.0	2.51	7.03	6.27
Merged-chr16-24712383-2	chr16	24712291	24712491	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 7 of 12)	intron (NM_178665, intron 7 of 12)	-9464.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.44	4.78	19.4	2.01	6.14	4.7	1.0	9.17	8.65	1.51	6.03	6.58
Merged-chr12-85395876-2	chr12	85395780	85395980	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21163.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	10.09	6.04	14.83	6.44	6.55	5.64	5.31	8.8	6.49	4.52	7.03	3.76
Merged-chr7-127111664-3	chr7	127111559	127111759	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	10370.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	8.08	7.04	0.57	2.01	15.14	6.27	5.98	8.36	6.1	12.55	14.07	4.39
Merged-chr15-34054918-1	chr15	34054818	34055018	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27801.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.42	2.77	1.14	0.0	7.77	2.82	4.32	11.38	3.34	2.01	3.52	6.27
Merged-chr14-76073331-2	chr14	76073231	76073431	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37484.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	6.06	3.52	3.99	12.07	10.64	2.2	9.97	5.33	6.88	6.53	16.58	9.08
Merged-chr1-45905303-2	chr1	45905214	45905414	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20280.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	8.88	5.79	5.7	3.62	0.41	1.88	6.98	3.2	2.56	7.53	2.01	8.46
Merged-chr18-61068595-1	chr18	61068495	61068695	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008809, intron 9 of 22)	intron (NM_008809, intron 9 of 22)	23445.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	3.63	7.29	10.27	3.22	6.55	8.47	4.32	7.46	12.19	7.53	6.53	12.22
Merged-chr4-129419196-1	chr4	129419096	129419296	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	21622.0	NM_153541	215627.0	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	12.52	2.01	7.99	10.05	4.5	0.94	1.0	3.11	1.97	0.5	2.51	5.64
Merged-chr17-35025176-3	chr17	35025007	35025207	+	688.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023893)	TTS (NM_023893)	2909.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	3.63	5.03	2.85	2.82	3.27	3.76	1.33	2.27	5.7	6.03	5.02	4.7
Merged-chr1-86363902-2	chr1	86363803	86364003	+	688.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015507, intron 1 of 1)	B2_Mm2|SINE|B2	4329.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	1.21	2.26	2.28	6.84	9.0	14.11	5.65	5.83	8.26	12.55	17.08	4.07
Merged-chr17-36064776-1	chr17	36064676	36064876	+	688.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6405.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	1.62	0.0	1.14	2.41	8.18	7.53	5.98	9.73	0.59	1.51	0.0	0.31
Merged-chr4-149543333-3	chr4	149543231	149543431	+	688.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023465, intron 2 of 4)	intron (NM_023465, intron 2 of 4)	-1786.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	8.08	6.54	9.13	5.63	4.91	8.15	4.65	8.3	10.42	12.55	16.58	7.83
Merged-chr8-94186827-2	chr8	94186721	94186921	+	688.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7732.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	7.67	4.28	5.13	4.02	8.59	7.21	7.31	5.66	8.85	5.02	5.02	4.7
Merged-chr8-108574295-2	chr8	108574197	108574397	+	688.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	10380.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	7.67	4.53	2.85	7.64	6.95	5.96	3.99	9.7	10.42	7.03	8.54	10.34
Merged-chr13-58542982-2	chr13	58542878	58543078	+	688.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67899.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	2.42	6.54	2.28	6.44	1.64	10.03	7.97	8.07	9.05	3.01	13.06	12.22
Merged-chr11-117139290-2	chr11	117139198	117139398	+	688.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	24126.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.85	5.03	8.56	7.24	10.23	5.02	4.65	9.17	4.72	7.53	10.55	7.52
Merged-chr10-94966923-3	chr10	94966838	94967038	+	688.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22360.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.04	6.79	8.56	8.04	11.86	6.59	6.64	6.7	11.21	5.02	9.55	7.21
Merged-chr10-98878849-1	chr10	98878749	98878949	+	688.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35793.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.27	4.78	11.41	7.64	8.18	9.09	3.99	6.08	9.44	5.02	10.05	2.82
Merged-chr7-100855417-3	chr7	100855299	100855499	+	688.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8014.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.27	9.31	1.71	6.44	8.59	11.92	2.33	7.07	10.03	11.05	6.03	8.77
Merged-chr5-114781073-3	chr5	114780972	114781172	+	688.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	5932.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	8.48	7.29	7.42	4.02	9.0	13.48	3.99	7.43	18.69	14.06	16.58	7.83
Merged-chr17-64375526-3	chr17	64375399	64375599	+	688.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43616.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	12.11	11.82	7.42	13.27	5.73	10.35	5.65	6.42	11.8	8.54	16.58	3.45
Merged-chr10-41826704-3	chr10	41826609	41826809	+	688.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	16135.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	13.73	8.55	4.56	6.84	12.27	10.35	11.29	8.24	9.83	4.52	10.55	8.46
Merged-chr10-96464787-3	chr10	96464656	96464856	+	688.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-152245.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	10.09	3.77	2.28	9.25	6.14	7.53	8.3	12.62	6.69	3.01	7.03	5.33
Merged-chr14-70096507-2	chr14	70096368	70096568	+	688.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3625.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	4.04	8.3	0.57	3.22	3.68	4.39	7.97	4.93	7.47	9.04	16.08	6.89
Merged-chr9-119246695-2	chr9	119246601	119246801	+	688.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 14 of 18)	intron (NM_001359582, intron 14 of 18)	-15009.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	7.27	3.77	6.28	5.63	3.27	6.27	4.32	5.38	16.72	7.03	10.55	8.14
Merged-chr10-44149054-1	chr10	44148954	44149154	+	688.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21393.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	6.06	4.53	6.28	2.82	6.95	4.08	2.66	7.71	13.96	10.04	12.06	10.96
Merged-chr14-9555776-6	chr14	9555686	9555886	+	688.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328309.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.63	5.03	2.85	4.83	3.27	2.2	4.98	3.59	0.98	5.52	3.52	5.01
Merged-chr2-117197234-2	chr2	117197147	117197347	+	688.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12120.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	10.9	4.53	14.83	8.04	9.41	10.03	6.31	13.96	7.08	6.03	2.51	1.88
Merged-chr3-109008375-3	chr3	109008273	109008473	+	688.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	19234.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	11.31	7.29	14.83	7.64	8.59	6.9	7.64	5.24	12.19	4.02	20.6	6.58
Merged-chr5-3787728-2	chr5	3787623	3787823	+	688.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003909, intron 1 of 19)	MER68-int|LTR|ERVL	-14936.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	4.44	6.54	11.41	10.46	9.0	4.08	9.63	18.31	5.7	12.05	7.03	6.58
Merged-chr6-124911770-2	chr6	124911683	124911883	+	688.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008479)	promoter-TSS (NM_008479)	-78.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	10.5	8.8	6.85	9.25	5.73	5.02	3.32	6.9	3.93	5.02	3.01	3.76
Merged-chr1-165624781-2	chr1	165624700	165624900	+	688.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	9741.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	1.21	6.54	1.14	3.22	7.77	8.15	11.63	7.82	8.06	4.52	12.56	1.57
Merged-chr8-34180086-2	chr8	34179988	34180188	+	688.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13376.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	7.67	2.26	5.7	2.41	4.09	3.14	3.99	8.38	12.19	4.52	19.09	6.27
Merged-chr7-116031986-3	chr7	116031916	116032116	+	688.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152104)	promoter-TSS (NR_152104)	37.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	7.27	10.31	5.7	10.46	3.68	5.33	4.65	4.54	8.26	5.02	8.04	9.71
Merged-chr11-117790458-3	chr11	117790348	117790548	+	688.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195090, intron 10 of 15)	intron (NM_001195090, intron 10 of 15)	-7212.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	8.48	4.28	9.13	3.62	5.32	4.7	1.99	6.36	13.18	3.01	11.05	10.02
Merged-chr10-117144267-1	chr10	117144167	117144367	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	RSINE1|SINE|B4	4207.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.85	3.77	10.27	4.83	5.32	5.64	4.65	6.67	5.7	9.04	2.51	0.94
Merged-chr9-5311494-1	chr9	5311394	5311594	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	2645.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	6.06	8.05	0.0	8.04	1.64	3.76	4.98	2.52	7.47	5.02	4.52	1.25
Merged-chr17-27119370-1	chr17	27119270	27119470	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_080553, exon 55 of 58)	exon (NM_080553, exon 55 of 58)	14521.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	4.04	3.77	1.71	2.41	4.91	2.51	2.33	6.25	9.44	6.53	8.04	4.39
Merged-chr1-77832004-1	chr1	77831904	77832104	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-316916.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.81	5.79	1.71	1.21	8.59	2.82	3.32	6.36	4.33	12.05	2.01	2.51
Merged-chr7-109562420-1	chr7	109562320	109562520	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001326, intron 2 of 19)	intron (NM_001001326, intron 2 of 19)	42288.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	4.04	8.55	5.7	6.84	7.77	2.82	3.65	3.39	3.15	7.53	6.03	5.01
Merged-chr2-57407775-1	chr2	57407675	57407875	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	169393.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	1.62	0.5	0.0	4.02	2.45	1.88	6.64	5.1	2.36	6.53	2.51	2.51
Merged-chr7-110718731-1	chr7	110718631	110718831	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49475.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	5.25	1.01	0.57	2.41	6.14	5.33	3.99	9.06	6.1	7.53	9.04	3.76
Merged-chr2-74578339-1	chr2	74578239	74578439	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110209, intron 1 of 13)	intron (NM_001110209, intron 1 of 13)	609.0	NM_001110209	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	7.27	6.04	5.13	2.41	4.5	6.9	4.32	5.66	4.72	5.52	15.58	2.82
Merged-chr7-109865730-1	chr7	109865630	109865830	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020052)	promoter-TSS (NM_020052)	-51.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	4.44	1.26	9.13	1.61	5.32	5.96	1.99	6.62	5.31	1.0	8.54	5.01
Merged-chr1-55792999-1	chr1	55792899	55793099	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138242.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.23	3.02	3.99	4.83	1.64	3.14	5.98	6.45	2.56	2.51	6.53	2.51
Merged-chr3-126598152-1	chr3	126598052	126598252	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 1 of 18)	intron (NM_001025438, intron 1 of 18)	1201.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.25	5.79	1.71	0.4	6.95	3.14	13.95	5.8	6.69	6.03	6.53	3.13
Merged-chr2-132114204-2	chr2	132114111	132114311	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	(CAAAAA)n|Simple_repeat|Simple_repeat	30897.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.06	12.07	6.28	4.02	6.14	6.59	9.97	4.23	15.93	13.56	7.03	7.52
Merged-chr6-73711724-1	chr6	73711624	73711824	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-240703.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.4	3.02	8.56	0.0	6.55	2.51	2.33	8.3	4.52	0.0	0.0	2.19
Merged-chr6-52442254-2	chr6	52442152	52442352	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50199.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	8.88	5.03	15.97	8.85	7.77	5.64	2.66	7.57	5.7	8.03	4.52	4.39
Merged-chr12-111426642-1	chr12	111426542	111426742	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	9197.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	5.25	4.02	2.28	1.21	8.59	8.47	5.98	2.21	7.87	6.03	3.52	3.13
Merged-chr15-3259742-1	chr15	3259642	3259842	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11025.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.23	1.26	1.14	4.02	5.73	4.08	7.31	5.24	1.97	2.51	5.02	5.01
Merged-chr12-36041217-1	chr12	36041117	36041317	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	1261.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.85	2.01	6.28	7.24	6.14	2.82	4.65	8.78	0.39	6.03	0.0	2.19
Merged-chr5-91308118-2	chr5	91308022	91308222	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25046.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	3.63	8.05	9.7	7.64	9.41	8.47	5.98	7.4	9.44	12.05	5.53	4.07
Merged-chr3-136761802-3	chr3	136761703	136761903	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	91737.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	10.5	9.56	3.99	8.04	10.64	11.92	5.31	2.8	10.42	13.56	17.59	5.01
Merged-chr5-64312184-1	chr5	64312084	64312284	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	81827.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.21	0.5	2.28	0.0	4.91	1.25	6.64	6.31	3.15	5.02	4.52	2.19
Merged-chr2-11475188-1	chr2	11475088	11475288	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177752, intron 13 of 13)	intron (NM_001177752, intron 13 of 13)	26902.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.83	1.76	6.85	4.42	4.91	4.39	5.65	5.78	4.52	5.52	3.01	5.01
Merged-chr9-60848939-1	chr9	60848839	60849039	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 4 of 19)	intron (NM_001357408, intron 4 of 19)	54497.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	1.62	0.25	1.71	1.21	0.82	0.0	4.32	6.59	0.0	1.0	2.01	0.0
Merged-chr14-33371385-1	chr14	33371285	33371485	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39639.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.04	6.29	4.56	10.46	6.95	8.15	3.32	5.78	4.92	2.01	8.54	3.13
Merged-chr9-3004771-2	chr9	3004636	3004836	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	34007.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.46	6.79	2.85	1.61	4.91	3.14	4.65	3.48	5.11	12.05	7.54	10.96
Merged-chr14-34363313-1	chr14	34363213	34363413	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7920.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	3.23	4.28	1.71	8.45	2.86	6.9	2.33	6.2	8.65	12.05	8.04	2.51
Merged-chr6-113664493-1	chr6	113664393	113664593	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	26026.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	4.04	4.02	1.14	2.41	3.27	3.14	1.33	7.37	11.21	10.04	5.02	2.82
Merged-chr8-56076020-1	chr8	56075920	56076120	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	135195.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	6.46	3.02	2.28	9.25	6.14	3.14	4.65	8.1	11.6	4.52	7.54	3.76
Merged-chr17-30575359-1	chr17	30575259	30575459	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	928.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	12.52	11.57	11.41	14.08	0.41	4.7	6.64	3.79	1.97	3.01	1.51	2.51
Merged-chr16-55777005-1	chr16	55776905	55777105	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	45133.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.83	5.79	8.56	2.41	8.18	13.48	2.66	3.06	8.85	10.54	3.01	7.52
Merged-chr10-68126223-3	chr10	68126159	68126359	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	146689.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	9.29	2.26	6.85	2.41	18.0	8.15	8.3	7.91	7.87	9.54	11.56	5.33
Merged-chr1-135766396-2	chr1	135766269	135766469	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013750, exon 1 of 2)	5' UTR (NM_013750, exon 1 of 2)	284.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	8.08	12.07	9.13	7.24	5.32	4.08	7.64	3.9	5.11	6.53	11.05	9.4
Merged-chr4-11454546-1	chr4	11454446	11454646	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31412.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	5.25	7.04	7.42	8.45	5.73	4.7	5.31	6.59	7.47	5.02	3.52	2.51
Merged-chr10-82866094-1	chr10	82865994	82866194	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-532.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.44	1.01	4.56	0.8	3.68	0.63	2.99	6.31	12.39	5.02	10.05	6.58
Merged-chr10-96627557-1	chr10	96627457	96627657	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10556.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.27	8.05	1.14	2.01	4.09	7.84	0.0	0.0	1.38	3.51	1.51	0.31
Merged-chr7-114439943-2	chr7	114439849	114440049	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	24695.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	7.67	6.54	10.84	4.02	3.68	5.64	4.65	8.83	13.37	6.53	6.03	4.07
Merged-chr10-98916392-3	chr10	98916245	98916445	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	1193.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.63	3.02	9.7	3.62	3.68	7.21	1.66	2.75	8.26	5.02	7.03	5.33
Merged-chr7-89441300-2	chr7	89441199	89441399	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14993.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	7.27	9.31	2.85	7.64	6.55	8.47	9.97	12.08	5.11	9.04	5.02	4.7
Merged-chr7-126630126-2	chr7	126630013	126630213	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4643.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	5.65	0.25	1.71	3.62	3.27	4.39	5.65	6.03	9.44	8.03	19.6	8.14
Merged-chr11-62458064-1	chr11	62457964	62458164	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-396.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	1.62	1.51	5.13	4.02	0.82	1.57	5.65	1.12	13.96	9.54	11.05	3.45
Merged-chr7-102142189-1	chr7	102142089	102142289	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287164, intron 20 of 32)	intron (NM_001287164, intron 20 of 32)	-25476.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	6.06	0.0	1.14	6.03	3.27	3.76	5.31	6.87	2.36	1.51	2.51	5.64
Merged-chr11-115766197-1	chr11	115766097	115766297	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028014, intron 1 of 31)	intron (NM_028014, intron 1 of 31)	764.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	3.63	1.76	2.28	4.02	10.64	10.98	2.66	4.91	2.56	4.02	5.02	1.57
Merged-chr3-59175001-1	chr3	59174901	59175101	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	20103.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	6.06	11.32	9.13	4.02	3.27	2.51	0.66	5.58	2.16	2.51	2.01	1.88
Merged-chr10-84055913-1	chr10	84055813	84056013	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	44784.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.63	0.5	2.28	0.0	9.0	3.14	1.33	6.11	6.1	3.01	7.03	1.57
Merged-chr1-180331044-1	chr1	180330944	180331144	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_003623)	promoter-TSS (NR_003623)	-495.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	4.85	12.32	9.7	7.64	9.82	9.41	1.99	5.94	6.69	9.54	8.04	11.9
Merged-chr11-95704251-1	chr11	95704151	95704351	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045780, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	8503.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	4.85	4.02	9.13	2.41	9.41	2.82	1.66	6.2	3.15	2.51	4.02	4.7
Merged-chr17-42387865-1	chr17	42387765	42387965	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	URR1A|DNA|hAT-Charlie	71265.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	1.62	1.01	1.14	4.83	3.27	1.25	2.99	7.37	10.03	3.01	4.52	11.28
Merged-chr5-148548777-1	chr5	148548677	148548877	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	2896.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.65	3.27	9.13	1.21	4.5	6.27	2.66	2.1	11.21	10.04	8.04	5.01
Merged-chr12-111166808-1	chr12	111166708	111166908	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001286122, intron 1 of 9)	CpG	438.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	8.48	8.05	3.42	2.01	3.68	6.59	9.63	4.65	17.31	13.56	13.57	9.71
Merged-chr6-29828998-3	chr6	29828915	29829115	+	687.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-24726.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.25	5.03	10.27	14.08	6.55	10.66	3.65	7.26	9.64	10.04	8.54	7.21
Merged-chr17-8051387-3	chr17	8051291	8051491	+	687.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033442, intron 2 of 3).2	intron (NM_001033442, intron 2 of 3).2	49837.0	NM_001033442	381059.0	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	Gm1604	predicted gene 1604b	protein-coding	7.27	10.06	6.28	11.26	11.05	8.78	4.65	9.36	6.88	4.02	5.02	6.27
Merged-chr15-99715056-3	chr15	99714952	99715152	+	687.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155353)	TTS (NR_155353)	-2541.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	14.54	7.8	9.13	5.63	9.0	9.72	3.99	8.86	20.65	12.05	11.05	9.71
Merged-chr19-44750898-2	chr19	44750795	44750995	+	687.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6499.0	NM_011037	18504.0	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	7.67	3.02	11.41	10.46	8.18	7.53	1.99	8.55	4.52	2.01	15.07	5.33
Merged-chr17-51177718-2	chr17	51177584	51177784	+	687.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1668.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.06	4.78	7.99	3.22	8.59	1.88	3.99	6.81	12.59	7.03	2.51	4.7
Merged-chr1-172357644-2	chr1	172357519	172357719	+	687.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	16409.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	2.83	8.55	3.42	1.61	6.95	3.76	7.97	6.42	9.44	7.53	3.52	7.52
Merged-chr19-32646174-3	chr19	32646063	32646263	+	687.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360403, intron 7 of 11)	intron (NM_001360403, intron 7 of 11)	26158.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	5.65	4.28	11.98	10.46	8.18	10.03	6.31	18.95	8.26	6.53	6.53	7.21
Merged-chr1-177261508-2	chr1	177261418	177261618	+	687.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-12751.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	8.08	6.54	5.7	5.23	10.64	12.23	6.64	10.09	5.7	8.03	4.02	4.39
Merged-chr10-95867748-1	chr10	95867648	95867848	+	687.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	-72915.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.65	2.01	2.28	8.85	11.05	10.98	5.98	7.99	10.03	7.53	7.03	4.07
Merged-chr2-158768596-2	chr2	158768496	158768696	+	687.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027975, intron 1 of 3)	CpG	497.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	6.86	5.03	3.99	4.42	8.18	8.78	7.64	7.71	8.65	12.05	4.02	8.77
Merged-chr16-27296734-2	chr16	27296638	27296838	+	687.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10903.0	NM_198112	239790.0	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	5.25	5.03	9.7	10.05	4.91	6.9	7.31	8.89	9.64	6.03	10.05	7.83
Merged-chrX-169159699-2	chrX	169159577	169159777	+	687.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	L2a|LINE|L2	27532.0	NM_001290371	11704.0	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	3.23	4.28	4.56	8.04	1.64	6.9	3.99	8.38	8.26	1.51	11.05	2.19
Merged-chr8-22895811-3	chr8	22895718	22895918	+	687.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36279.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.44	2.52	12.55	10.05	8.59	6.9	2.99	8.13	5.7	13.56	15.07	7.52
Merged-chr10-93680872-1	chr10	93680772	93680972	+	687.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038017, intron 1 of 5)	intron (NR_038017, intron 1 of 5)	2450.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	0.81	4.53	4.56	4.83	9.41	7.53	4.65	7.21	7.67	9.04	20.1	4.7
Merged-chr11-60219842-2	chr11	60219749	60219949	+	687.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	778.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	2.02	1.76	1.14	0.8	11.05	18.5	7.31	4.85	13.37	16.57	6.03	6.58
Merged-chr14-65347178-2	chr14	65347067	65347267	+	687.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11509.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.46	5.03	2.28	7.64	7.36	8.15	4.32	11.27	4.33	9.04	7.03	6.89
Merged-chr18-55398485-2	chr18	55398392	55398592	+	687.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34|LTR|ERV1	-405901.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.83	2.52	5.13	9.65	6.14	7.84	9.3	12.48	9.44	1.0	3.52	5.64
Merged-chr14-115041522-3	chr14	115041419	115041619	+	687.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2152.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	10.9	7.04	10.27	6.84	10.64	8.78	15.28	9.56	16.13	8.54	9.55	4.7
Merged-chr17-49935987-2	chr17	49935875	49936075	+	687.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	254522.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.85	3.27	7.99	2.01	10.64	10.98	7.97	8.75	8.26	3.51	8.04	6.27
Merged-chr1-133660852-2	chr1	133660738	133660938	+	687.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	47.0	NM_001166552	667118.0	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	8.08	5.79	1.14	6.84	11.45	9.72	6.31	6.5	8.46	10.54	11.56	12.22
Merged-chr15-64260260-3	chr15	64260165	64260365	+	687.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	RMER1B|Other|Other	52408.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.44	2.52	7.99	13.67	7.36	5.96	4.65	10.57	7.08	4.02	12.06	6.58
Merged-chr15-64447430-3	chr15	64447336	64447536	+	687.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64517.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	9.69	6.29	20.54	15.28	8.59	7.53	4.65	19.49	12.59	10.54	17.08	8.77
Merged-chr7-113208262-3	chr7	113208152	113208352	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357070, intron 1 of 19)	CpG	787.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	7.27	9.56	10.27	4.42	9.0	5.33	16.61	6.84	9.24	13.56	18.59	13.47
Merged-chr5-36485421-2	chr5	36485328	36485528	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	840.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	3.23	4.53	0.0	5.23	5.32	3.45	5.65	5.21	8.46	8.03	11.56	13.16
Merged-chr5-90324331-2	chr5	90324259	90324459	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	B1_Mur1|SINE|Alu	41826.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	4.44	4.28	7.42	2.41	9.0	4.39	7.31	8.44	10.23	4.02	6.53	5.01
Merged-chr1-87201640-1	chr1	87201540	87201740	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4171.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	5.65	3.52	13.69	5.63	4.91	3.45	4.32	7.21	5.51	7.53	5.02	0.94
Merged-chrX-160751012-1	chrX	160750912	160751112	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17001.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	2.83	2.77	5.7	1.61	3.68	4.39	4.32	5.8	6.88	7.53	11.05	4.39
Merged-chr9-63609018-1	chr9	63608918	63609118	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	6372.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	2.42	3.27	5.7	3.22	3.68	5.02	5.65	12.53	7.47	6.53	4.52	1.88
Merged-chr1-36737491-2	chr1	36737392	36737592	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040290, intron 5 of 8)	intron (NR_040290, intron 5 of 8)	22954.0	NR_040290	71166.0	Mm.157049	NR_040290	ENSMUSG00000102416	4933424G06Rik	1700104I15Rik	RIKEN cDNA 4933424G06 gene	ncRNA	4.85	8.05	9.7	2.82	4.5	10.03	4.32	6.28	6.49	7.03	14.57	5.95
Merged-chr14-122465696-1	chr14	122465596	122465796	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022987)	promoter-TSS (NM_022987)	-38.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	2.83	2.52	0.57	2.01	3.68	2.2	3.32	5.78	4.13	1.0	2.51	6.89
Merged-chr16-7455802-1	chr16	7455702	7455902	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	385967.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.81	1.26	3.99	1.21	4.09	5.33	4.32	5.3	0.39	1.0	0.0	0.0
Merged-chr12-40205577-2	chr12	40205492	40205692	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013562, intron 9 of 11)	B4|SINE|B4	-6277.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	10.09	5.28	5.13	1.21	7.36	15.68	5.65	3.7	3.34	6.53	7.03	2.19
Merged-chr7-101845337-1	chr7	101845237	101845437	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303231)	promoter-TSS (NM_001303231)	-6.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	2.42	3.27	2.28	4.42	9.41	8.15	9.63	7.91	8.85	7.03	5.53	3.13
Merged-chr17-34685879-3	chr17	34685791	34685991	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031176, intron 8 of 32)	intron (NM_031176, intron 8 of 32)	15356.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	7.67	4.53	21.68	10.46	11.45	6.59	13.29	7.32	10.42	10.04	17.08	7.52
Merged-chr7-68144463-1	chr7	68144363	68144563	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119770.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.04	3.77	7.42	6.03	8.18	7.21	2.66	10.46	5.51	1.51	4.02	4.7
Merged-chr15-76787456-1	chr15	76787356	76787556	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	30714.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.46	3.77	1.14	0.0	10.64	5.96	1.33	5.83	0.39	0.0	0.5	1.88
Merged-chr2-93646091-2	chr2	93645996	93646196	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007442, intron 1 of 3)	CpG	3662.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.04	6.54	1.71	4.83	3.27	3.45	4.98	7.51	8.85	6.03	8.54	7.83
Merged-chr16-49817050-2	chr16	49816951	49817151	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38603.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	1.62	3.02	21.11	8.04	4.09	7.84	3.32	10.82	10.82	5.02	12.06	5.33
Merged-chrX-134913386-2	chrX	134913297	134913497	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50500.0	NM_001289736	83454.0	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	10.5	9.31	2.28	5.63	2.86	13.48	3.32	3.95	8.26	14.56	16.58	6.27
Merged-chr14-63424932-1	chr14	63424832	63425032	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7745.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	4.04	4.78	6.85	9.65	8.59	5.02	3.32	8.05	9.64	8.54	1.51	5.33
Merged-chr1-139263336-1	chr1	139263236	139263436	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	113740.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	4.85	5.03	1.71	8.04	6.55	2.2	7.97	6.53	4.13	7.03	2.51	1.88
Merged-chr17-87539738-1	chr17	87539638	87539838	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-92803.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	2.42	6.04	6.28	8.85	5.73	2.2	4.65	9.34	0.79	2.51	5.02	0.31
Merged-chr7-100198837-1	chr7	100198737	100198937	+	687.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	20154.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	6.46	4.28	2.28	6.03	12.27	7.53	6.64	5.83	0.2	3.01	3.52	0.0
Merged-chr10-22645341-2	chr10	22645257	22645457	+	687.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178934, intron 1 of 4)	CpG	346.0	NM_178934	353169.0	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	4.44	9.31	5.7	6.84	8.59	6.59	5.98	7.26	0.59	1.51	2.51	0.63
Merged-chr6-116670361-2	chr6	116670278	116670478	+	687.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	3458.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	2.42	7.04	5.7	2.41	5.73	9.72	5.98	3.0	10.82	13.05	13.06	8.77
Merged-chr5-5514384-2	chr5	5514248	5514448	+	687.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001193660, exon 2 of 5)	5' UTR (NM_001193660, exon 2 of 5)	441.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	3.63	4.02	6.28	5.23	9.41	5.02	9.3	7.29	9.24	8.54	8.54	6.89
Merged-chr2-126495997-1	chr2	126495897	126496097	+	687.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3850.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.81	4.28	2.28	2.01	5.32	8.15	3.32	5.64	4.33	3.51	8.04	4.07
Merged-chr11-72216658-3	chr11	72216564	72216764	+	687.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1072.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	19.79	8.3	12.55	6.44	10.64	6.27	5.98	5.36	17.11	19.58	13.06	7.52
Merged-chr18-11717919-1	chr18	11717819	11718019	+	687.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081223, intron 8 of 18)	L2|LINE|L2	60570.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.25	0.5	4.56	4.42	6.95	6.59	6.64	7.21	2.75	3.01	10.55	2.19
Merged-chr3-88144800-2	chr3	88144708	88144908	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	2436.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	4.44	5.79	5.13	6.03	4.91	11.29	2.99	2.36	7.67	8.03	3.52	7.21
Merged-chr12-103036875-1	chr12	103036775	103036975	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081017, intron 7 of 48)	L1MEc|LINE|L1	88016.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	10.09	2.52	1.71	8.04	10.64	5.64	12.29	5.44	5.51	7.03	4.52	2.51
Merged-chr13-3807132-2	chr13	3807017	3807217	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2799.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.04	2.77	10.84	7.24	9.41	8.47	2.33	6.22	13.37	13.05	17.08	7.83
Merged-chr2-60874111-2	chr2	60874016	60874216	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	MTD|LTR|ERVL-MaLR	7322.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	8.08	5.03	1.14	6.44	7.77	9.09	5.31	6.39	7.47	9.54	16.58	7.83
Merged-chr5-103387616-2	chr5	103387533	103387733	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37559.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	7.67	7.04	2.28	16.89	8.18	10.03	5.98	8.05	8.65	4.02	7.03	5.64
Merged-chr8-75099971-2	chr8	75099890	75100090	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010442, exon 5 of 5)	exon (NM_010442, exon 5 of 5)	6372.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.44	11.32	3.42	4.83	10.64	9.72	3.65	5.5	7.47	17.07	12.56	2.19
Merged-chr14-111675959-2	chr14	111675877	111676077	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198865, intron 1 of 1)	CpG	862.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	4.04	5.53	6.85	11.66	4.5	2.82	9.97	9.11	7.87	5.52	12.06	4.7
Merged-chr17-55976443-2	chr17	55976344	55976544	+	687.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001159523, exon 7 of 7)	3' UTR (NM_001159523, exon 7 of 7)	5962.0	NM_009168	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	12.11	9.31	10.27	4.02	5.32	7.21	1.33	5.55	5.51	5.02	6.03	6.27
Merged-chr2-33435971-2	chr2	33435857	33436057	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4633.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.04	3.52	4.56	7.64	4.09	10.66	6.31	6.9	7.08	5.02	3.52	8.77
Merged-chr4-144893693-1	chr4	144893593	144893793	+	687.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001172424, exon 2 of 7)	exon (NM_001172424, exon 2 of 7)	556.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.23	5.53	2.28	2.41	8.59	5.64	5.65	4.54	2.36	6.03	2.51	5.95
Merged-chr9-121671527-3	chr9	121671409	121671609	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	28793.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	7.67	2.77	2.85	4.83	5.73	7.21	2.66	4.96	16.52	15.57	11.05	11.9
Merged-chr11-6524630-3	chr11	6524517	6524717	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045893)	TTS (NR_045893)	-3659.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	6.46	7.29	7.42	5.23	13.5	9.09	6.64	7.88	4.72	5.52	10.05	7.52
Merged-chr1-181126964-3	chr1	181126870	181127070	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026171, exon 10 of 23)	exon (NM_026171, exon 10 of 23)	17234.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	7.67	11.82	9.7	6.84	6.95	15.99	5.65	7.79	8.85	9.54	8.04	4.07
Merged-chr4-24897043-3	chr4	24896923	24897123	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1060.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	2.83	11.07	10.84	6.44	8.18	14.11	6.64	9.34	12.98	12.05	11.05	8.14
Merged-chr1-64531658-2	chr1	64531529	64531729	+	687.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1175.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.44	1.76	3.42	0.0	4.5	7.21	2.33	7.04	13.18	4.02	9.04	7.21
Merged-chr13-63563901-2	chr13	63563792	63563992	+	687.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	1843.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.44	6.04	3.42	4.02	5.73	7.53	4.98	5.3	10.42	4.02	10.55	5.01
Merged-chr1-138239775-2	chr1	138239675	138239875	+	687.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33963.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.44	3.52	11.41	5.23	9.0	10.66	5.65	6.73	10.62	7.53	10.05	1.57
Merged-chr5-66076851-3	chr5	66076753	66076953	+	687.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	21326.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.62	6.79	11.41	12.87	13.5	5.33	7.64	7.71	8.85	5.02	7.03	4.07
Merged-chr16-91386142-1	chr16	91386042	91386242	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	13359.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.88	2.77	12.55	0.8	5.73	14.42	7.31	6.31	8.06	8.03	6.03	4.39
Merged-chr7-139994897-1	chr7	139994797	139994997	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2335.0	NM_001291066	11501.0	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	4.85	2.26	7.99	0.0	6.55	5.96	1.99	5.47	9.24	8.54	3.52	2.82
Merged-chr2-72318641-1	chr2	72318541	72318741	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 2 of 19)	ERVL-int|LTR|ERVL	32940.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.04	3.02	8.56	4.02	5.73	6.27	8.97	7.09	0.0	1.0	1.51	2.19
Merged-chr19-47329362-1	chr19	47329262	47329462	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008018, intron 6 of 14)	RMER1C|Other|Other	-55773.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	2.83	8.3	3.99	3.22	7.36	5.64	1.99	1.46	2.75	1.0	7.54	1.25
Merged-chr11-4976584-1	chr11	4976484	4976684	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	MLT2F|LTR|ERVL	-10240.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	2.83	15.09	2.28	2.41	2.45	9.72	9.97	2.3	9.64	12.55	3.01	3.45
Merged-chr6-120620452-1	chr6	120620352	120620552	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-45969.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	2.83	1.76	2.28	3.22	3.27	3.14	6.31	4.85	1.57	2.01	5.53	5.95
Merged-chr19-34284584-2	chr19	34284488	34284688	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6071.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	7.27	7.04	1.14	6.84	6.95	0.94	3.99	4.26	11.41	6.53	13.57	6.58
Merged-chr6-31813977-1	chr6	31813877	31814077	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147846.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0.0	0.0	0.0	0.0	0.82	3.76	2.33	1.18	0.59	0.0	0.5	1.57
Merged-chr4-32343880-1	chr4	32343780	32343980	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73555.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.42	2.77	6.28	8.85	1.64	6.9	3.65	4.26	2.36	0.0	2.01	2.82
Merged-chr4-141635581-1	chr4	141635481	141635681	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 6 of 18)	(T)n|Simple_repeat|Simple_repeat	-11747.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.63	2.01	1.71	5.23	1.64	7.53	2.66	7.79	4.72	5.02	9.04	4.7
Merged-chr9-59752074-1	chr9	59751974	59752174	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	900.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	3.63	2.77	5.13	2.41	2.05	5.96	3.32	4.91	4.13	5.52	2.01	2.82
Merged-chr19-47313946-1	chr19	47313846	47314046	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 8 of 14)	intron (NM_008018, intron 8 of 14)	-40357.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	2.83	3.77	5.13	5.63	8.59	2.82	3.32	4.96	0.39	0.0	0.0	0.0
Merged-chr1-153543214-1	chr1	153543114	153543314	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6500.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	3.23	4.53	5.13	4.83	5.32	3.76	5.98	5.58	1.38	2.51	0.5	2.51
Merged-chr10-9071753-2	chr10	9071651	9071851	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185681.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.06	6.54	9.7	4.83	2.86	11.92	1.66	6.9	9.24	1.0	9.04	5.33
Merged-chr1-162631275-1	chr1	162631175	162631375	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7875.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	1.62	1.01	2.28	0.0	2.05	0.31	4.98	7.91	2.95	4.02	0.5	1.25
Merged-chr5-31179431-1	chr5	31179331	31179531	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027901, intron 1 of 18)	intron (NM_027901, intron 1 of 18)	713.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	3.23	7.8	6.28	4.02	2.05	6.9	8.97	5.61	7.08	6.53	20.1	4.39
Merged-chr11-67080375-2	chr11	67080272	67080472	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099635, intron 3 of 40)	intron (NM_001099635, intron 3 of 40)	2072.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	7.27	7.04	3.42	4.02	9.0	6.27	0.0	6.81	2.95	6.53	5.02	3.13
Merged-chr6-29241909-3	chr6	29241790	29241990	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	-25526.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	10.09	7.04	7.42	9.65	17.59	10.35	2.99	7.82	7.67	15.06	14.07	5.95
Merged-chr2-28755693-1	chr2	28755593	28755793	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033874, intron 10 of 12)	intron (NM_001033874, intron 10 of 12)	22415.0	NR_037271	100526498.0		NR_037271	ENSMUSG00000092832	Mir3088	mir-3088|mmu-mir-3088	microRNA 3088	ncRNA	8.88	2.01	3.99	5.63	7.77	8.15	2.99	6.31	4.92	16.07	6.03	4.7
Merged-chr16-91064809-1	chr16	91064709	91064909	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	4336.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	2.02	1.76	1.14	1.61	1.64	6.27	3.99	5.07	4.92	0.0	6.03	2.82
Merged-chr6-99026924-2	chr6	99026864	99027064	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1334.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.02	4.53	1.14	3.62	3.27	4.39	2.99	5.02	4.33	9.54	7.03	2.82
Merged-chr11-118356400-1	chr11	118356300	118356500	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	-989.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	2.02	4.02	0.0	3.62	2.86	5.02	3.32	4.18	5.51	3.51	6.03	9.08
Merged-chr10-128895637-3	chr10	128895539	128895739	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3921.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	7.67	6.54	5.13	6.84	11.45	12.54	6.31	6.42	9.24	9.54	15.07	5.33
Merged-chr15-10888083-1	chr15	10887983	10888183	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER97a|DNA|hAT-Tip100	59032.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	8.08	2.77	1.14	7.24	6.14	3.45	5.31	4.91	5.51	1.51	5.02	3.45
Merged-chr8-106574507-1	chr8	106574407	106574607	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12636.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	4.85	4.53	7.99	3.22	6.95	5.96	2.66	8.89	6.88	3.01	5.02	0.94
Merged-chr4-139197675-2	chr4	139197574	139197774	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3563.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.42	3.02	2.85	0.4	6.55	1.88	4.98	5.69	9.64	2.01	10.05	6.58
Merged-chr13-49055904-1	chr13	49055804	49056004	+	687.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 23 of 29)	intron (NM_001290313, intron 23 of 29)	87792.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	5.65	3.52	8.56	6.44	5.73	2.51	9.97	3.06	10.03	3.51	10.55	8.46
Merged-chr2-16253568-1	chr2	16253468	16253668	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 38 of 38)	L1_Mus2|LINE|L1	-102736.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	2.02	2.01	3.42	6.03	3.68	3.14	5.31	7.46	5.7	3.51	8.54	2.51
Merged-chr7-132765825-1	chr7	132765725	132765925	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11091.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	1.62	0.5	4.56	4.02	3.68	2.82	5.31	6.48	5.11	4.02	3.01	2.19
Merged-chr1-165609704-1	chr1	165609604	165609804	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	24837.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.83	1.51	2.28	2.82	0.0	5.02	11.96	5.05	3.74	4.52	3.01	0.94
Merged-chrX-102252171-2	chrX	102252074	102252274	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007709)	promoter-TSS (NM_007709)	7.0	NM_001276466	12705.0	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	4.85	3.02	0.57	5.23	9.82	6.59	7.31	11.19	7.28	3.51	9.55	9.4
Merged-chr2-34644828-2	chr2	34644723	34644923	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110409.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.44	3.27	1.71	0.4	6.55	2.2	1.0	5.36	8.06	7.03	16.58	4.7
Merged-chr2-42188228-1	chr2	42188128	42188328	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053011, intron 2 of 90)	intron (NM_053011, intron 2 of 90)	259340.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	5.25	1.01	3.42	2.41	4.09	3.76	3.65	6.03	3.74	2.01	6.03	4.07
Merged-chr9-15300227-1	chr9	15300127	15300327	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199485, intron 2 of 8)	B3|SINE|B2	1380.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	3.23	6.29	1.14	4.42	7.36	4.39	1.33	7.99	7.47	1.0	1.51	2.51
Merged-chr10-52234073-2	chr10	52233984	52234184	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347444, intron 1 of 9)	CpG	465.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	6.86	8.05	3.99	9.65	6.14	9.41	14.62	11.21	3.54	9.54	3.01	8.46
Merged-chr11-31851257-1	chr11	31851157	31851357	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19683.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.65	2.52	2.28	5.63	6.55	4.7	4.65	6.67	6.29	5.02	0.0	0.63
Merged-chr10-24059108-1	chr10	24059008	24059208	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER45C|DNA|hAT-Tip100	9598.0	NM_001010839	435207.0	Mm.377966	NM_001010839	ENSMUSG00000100950	Taar7f	taR-7f	trace amine-associated receptor 7F	protein-coding	4.44	2.77	1.14	8.85	7.36	1.88	5.31	8.07	4.52	3.01	9.04	4.39
Merged-chr1-87849101-1	chr1	87849001	87849201	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-4186.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	3.63	2.26	3.42	0.0	10.64	9.09	2.99	7.4	2.56	3.01	9.04	2.82
Merged-chr8-24420537-2	chr8	24420430	24420630	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18416.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.44	3.27	0.57	2.01	8.59	11.29	7.31	10.04	6.69	13.05	7.03	9.71
Merged-chr15-66807382-2	chr15	66807276	66807476	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	Tigger16a|DNA|TcMar-Tigger	24453.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.4	7.04	6.28	0.8	7.36	6.27	5.98	7.6	11.6	7.53	7.54	4.07
Merged-chr3-149441439-1	chr3	149441339	149441539	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	166702.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.04	1.01	1.14	4.02	3.27	8.78	3.99	6.11	3.74	6.53	5.53	2.19
Merged-chr12-82276370-1	chr12	82276270	82276470	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-34979.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.65	1.51	0.57	1.61	10.23	1.88	4.32	5.72	1.38	4.02	2.51	1.88
Merged-chr19-53265873-2	chr19	53265824	53266024	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-10719.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	3.63	2.52	1.71	8.45	1.64	2.51	6.31	5.19	6.29	1.51	2.51	2.82
Merged-chr6-17590404-1	chr6	17590304	17590504	+	687.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46606.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.81	0.75	0.57	0.8	0.0	0.0	0.0	0.59	8.06	11.55	9.55	8.77
Merged-chr17-78407793-3	chr17	78407681	78407881	+	686.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	10371.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.85	6.54	9.13	7.24	10.64	10.66	7.64	14.58	12.0	8.03	10.55	7.52
Merged-chr11-70675253-2	chr11	70675150	70675350	+	686.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190379, intron 12 of 20)	intron (NM_001190379, intron 12 of 20)	-5834.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	6.46	4.53	8.56	1.61	18.41	5.96	11.63	7.99	7.08	8.03	8.04	5.33
Merged-chr13-117602374-3	chr13	117602272	117602472	+	686.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010408)	promoter-TSS (NM_010408)	52.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	14.94	8.8	9.7	12.87	9.41	8.47	7.31	16.82	8.85	7.03	30.15	8.46
Merged-chr8-79375770-3	chr8	79375693	79375893	+	686.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	23675.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.25	3.02	3.99	1.21	2.45	1.57	7.31	5.72	8.85	8.54	3.52	8.46
Merged-chr13-112100845-2	chr13	112100747	112100947	+	686.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-187604.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.65	8.8	14.26	8.45	5.73	5.64	8.64	7.29	3.74	9.54	3.52	2.51
Merged-chr8-116944152-2	chr8	116944010	116944210	+	686.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	717.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	10.9	3.02	11.98	16.49	11.45	1.25	5.98	4.26	3.93	4.52	7.03	9.4
Merged-chr5-121501686-2	chr5	121501580	121501780	+	686.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	1300.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	7.67	3.77	1.71	8.85	8.18	10.35	5.98	8.75	7.67	10.54	4.52	5.64
Merged-chr9-121372188-1	chr9	121372088	121372288	+	686.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	5230.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.44	3.27	4.56	2.01	8.59	5.96	4.32	6.98	9.24	9.54	5.02	5.33
Merged-chr7-80439523-2	chr7	80439410	80439610	+	686.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34074.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.42	1.01	8.56	3.22	5.32	0.63	2.33	7.21	11.01	15.06	9.04	12.84
Merged-chr3-95136544-3	chr3	95136441	95136641	+	686.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	2453.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	6.86	7.29	9.13	7.64	8.18	2.82	6.64	9.03	16.92	9.54	14.57	8.77
Merged-chr1-36128661-2	chr1	36128581	36128781	+	686.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15632.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	6.86	4.02	0.0	1.21	16.77	9.09	5.65	13.6	5.7	2.51	8.04	6.58
Merged-chr8-127861108-1	chr8	127861008	127861208	+	686.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	417117.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	6.06	2.26	4.56	5.63	0.0	1.57	3.32	4.68	10.42	12.05	10.55	8.46
Merged-chr15-7941887-1	chr15	7941787	7941987	+	686.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	126337.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	2.02	4.78	5.13	5.63	4.91	1.88	4.32	5.33	5.7	7.03	5.53	3.76
Merged-chr9-98297770-1	chr9	98297670	98297870	+	686.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	1200.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.25	4.53	4.56	2.82	6.14	12.23	11.29	3.95	5.51	6.53	2.51	5.64
Merged-chr19-21820404-3	chr19	21820346	21820546	+	686.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	42106.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.86	11.82	0.57	1.61	7.36	18.81	4.65	3.53	21.64	19.58	15.07	5.01
Merged-chr16-21908674-2	chr16	21908607	21908807	+	686.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172821, exon 7 of 13)	exon (NM_172821, exon 7 of 13)	16738.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	2.42	3.52	2.85	2.01	10.23	9.72	7.31	11.33	6.49	5.02	5.02	7.83
Merged-chr7-100818697-2	chr7	100818609	100818809	+	686.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	44704.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	5.65	7.29	6.85	9.65	5.32	7.84	4.32	8.27	7.47	4.52	6.53	2.19
Merged-chr6-97804615-2	chr6	97804537	97804737	+	686.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2421.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.27	9.56	5.7	3.22	8.18	10.66	1.0	7.15	8.65	10.54	13.57	6.58
Merged-chrX-74023266-3	chrX	74023175	74023375	+	686.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039594)	TTS (NR_039594)	323.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	7.27	8.55	8.56	2.41	6.55	13.8	5.65	8.52	11.6	6.03	10.55	4.07
Merged-chr5-148332756-2	chr5	148332642	148332842	+	686.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007513, intron 12 of 12)	intron (NM_007513, intron 12 of 12)	60073.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	1.21	6.04	6.85	4.83	6.14	6.59	6.31	2.47	13.57	15.57	17.08	9.08
Merged-chr5-124873296-2	chr5	124873199	124873399	+	686.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081750, intron 2 of 3)	intron (NM_001081750, intron 2 of 3)	10594.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	5.25	7.55	8.56	8.04	6.55	5.64	1.99	7.85	4.33	1.51	5.02	10.02
Merged-chr17-80719473-2	chr17	80719367	80719567	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	Charlie1|DNA|hAT-Charlie	8558.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.04	5.03	10.27	9.25	2.05	6.59	4.32	9.53	4.13	1.0	6.03	2.82
Merged-chr7-4725402-2	chr7	4725317	4725517	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177887)	promoter-TSS (NM_177887)	-166.0	NM_177887	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	5.25	4.28	9.13	3.22	5.32	8.78	5.31	1.88	11.21	3.51	7.03	4.7
Merged-chr1-36914042-1	chr1	36913942	36914142	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	25485.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.04	3.77	5.13	8.85	4.91	8.78	3.99	6.22	4.13	4.52	5.53	2.19
Merged-chr15-53415545-2	chr15	53415445	53415645	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69362.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.86	5.03	2.85	6.44	3.27	4.08	5.98	5.97	9.64	10.54	7.54	6.89
Merged-chr6-66944600-2	chr6	66944484	66944684	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	47693.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.86	7.29	6.28	9.25	3.68	7.21	5.65	10.12	6.29	7.53	3.52	3.76
Merged-chr2-24587945-2	chr2	24587833	24588033	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112334.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	2.83	2.52	9.13	2.01	8.18	5.02	5.31	7.46	6.49	2.01	9.04	7.83
Merged-chr2-60031208-1	chr2	60031108	60031308	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	94532.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.86	1.01	3.99	0.8	3.27	10.35	4.65	6.2	5.31	3.01	5.53	6.27
Merged-chr2-155136074-1	chr2	155135974	155136174	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	2593.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	5.25	1.51	4.56	1.61	5.73	3.45	7.31	5.44	5.31	5.52	10.55	4.39
Merged-chrX-144232550-2	chrX	144232451	144232651	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65239.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	2.83	4.02	1.14	1.61	4.91	6.9	7.97	12.25	3.34	12.55	14.57	7.52
Merged-chr11-67545311-2	chr11	67545209	67545409	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	12311.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.44	5.28	9.13	0.4	0.82	5.64	1.33	1.12	11.01	7.53	11.05	2.51
Merged-chr17-22410959-2	chr17	22410852	22411052	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-13250.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	5.65	3.52	7.42	1.21	6.55	6.9	3.65	7.35	3.74	11.05	15.58	9.08
Merged-chr14-19714987-2	chr14	19714961	19715161	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36196.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.44	5.28	5.7	5.63	6.95	6.27	2.66	6.62	3.54	7.03	2.51	1.88
Merged-chr5-101763647-1	chr5	101763547	101763747	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1483.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.44	2.26	6.28	8.85	2.86	6.27	3.99	5.41	5.51	4.02	3.01	4.39
Merged-chr3-37693114-1	chr3	37693014	37693214	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	31246.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	2.42	1.51	1.14	0.0	8.59	3.14	7.31	5.16	3.34	2.01	2.51	1.57
Merged-chr11-57820243-1	chr11	57820143	57820343	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11904.0	NM_008213	15110.0	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed 1	protein-coding	4.04	5.03	1.14	2.01	11.86	3.76	4.98	7.32	2.75	3.01	5.02	1.88
Merged-chr4-86671108-1	chr4	86671008	86671208	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1049.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.62	4.78	2.85	4.42	0.82	5.64	5.65	4.09	4.13	6.53	3.52	4.39
Merged-chr5-110377015-3	chr5	110376943	110377143	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 11 of 18)	intron (NM_001142642, intron 11 of 18)	10084.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	8.88	10.31	11.41	5.63	7.36	6.9	4.65	9.34	12.98	3.01	7.54	6.89
Merged-chr4-53429985-1	chr4	53429885	53430085	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10428.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.86	3.77	8.56	6.44	19.23	8.47	7.97	4.68	6.69	5.52	1.0	2.19
Merged-chr7-116308511-3	chr7	116308378	116308578	+	686.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-102.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	4.85	6.79	7.99	6.03	9.82	6.27	6.64	9.9	6.69	9.04	8.54	7.52
Merged-chr6-129518199-2	chr6	129518095	129518295	+	686.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081186, exon 5 of 5)	3' UTR (NM_001081186, exon 5 of 5)	5638.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	5.65	8.05	5.7	5.63	8.59	9.09	5.65	10.77	6.69	9.04	14.57	7.21
Merged-chr17-67585473-2	chr17	67585375	67585575	+	686.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	43857.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	10.09	6.54	10.84	5.63	14.32	12.86	11.63	8.3	8.26	10.04	8.04	4.7
Merged-chr19-4338402-2	chr19	4338295	4338495	+	686.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001984, intron 12 of 20)	B3A|SINE|B2	-32173.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	11.31	2.77	11.41	4.02	15.55	9.41	4.65	7.54	11.6	7.53	6.53	4.39
Merged-chr1-36572954-2	chr1	36572839	36573039	+	686.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14558.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	12.11	3.02	2.85	4.02	12.68	11.29	8.64	6.03	10.23	19.08	13.06	7.83
Merged-chr5-137785416-2	chr5	137785311	137785511	+	686.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	1290.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	4.85	10.31	9.13	6.03	9.41	11.92	1.33	5.21	6.29	4.52	5.53	7.83
Merged-chr16-57182164-1	chr16	57182064	57182264	+	686.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358433, intron 14 of 18)	intron (NM_001358433, intron 14 of 18)	-14832.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	9.29	2.26	3.42	1.21	9.82	10.66	0.66	8.05	3.54	3.51	4.52	6.58
Merged-chr9-57510904-3	chr9	57510818	57511018	+	686.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	6816.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	13.73	8.05	3.42	7.24	4.91	5.33	3.32	9.93	7.08	9.54	11.56	6.89
Merged-chr5-44226133-1	chr5	44226033	44226233	+	686.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173764, intron 1 of 13)	CpG	473.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	15.34	7.04	10.84	10.46	4.5	5.96	8.97	7.85	7.28	7.03	7.54	5.64
Merged-chr11-79019489-2	chr11	79019387	79019587	+	686.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348207, intron 16 of 17)	intron (NM_001348207, intron 16 of 17)	-4110.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	8.08	6.29	1.14	3.22	12.27	10.98	5.65	5.05	8.26	12.55	10.05	2.19
Merged-chr13-45115149-2	chr13	45115046	45115246	+	686.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113050.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	7.27	7.55	19.4	6.84	7.36	6.59	4.65	12.2	9.83	12.05	12.06	11.28
Merged-chr15-31627486-3	chr15	31627408	31627608	+	686.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25392.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	4.44	7.29	6.85	10.86	3.68	6.27	15.94	8.05	5.31	5.02	10.05	5.01
Merged-chr10-118892714-2	chr10	118892616	118892816	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23813.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.88	7.04	10.27	7.64	5.32	7.84	6.31	9.59	4.13	9.54	11.56	7.21
Merged-chr8-80058015-2	chr8	80057925	80058125	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020259)	promoter-TSS (NM_020259)	-17.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	12.11	8.05	5.13	9.65	6.14	0.63	7.64	5.52	3.93	6.03	5.02	2.51
Merged-chr9-65629824-3	chr9	65629677	65629877	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-805.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	9.29	3.52	2.28	2.01	8.59	6.59	3.32	3.28	8.65	3.01	5.02	7.83
Merged-chr9-111289260-2	chr9	111289160	111289360	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17415.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	14.94	4.78	12.55	5.23	5.73	7.53	5.31	8.44	7.47	4.52	5.53	7.21
Merged-chr13-43919953-2	chr13	43919843	43920043	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	134831.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.86	3.77	9.7	14.08	7.77	6.59	2.33	10.37	10.23	2.01	3.52	10.96
Merged-chr4-57957544-3	chr4	57957399	57957599	+	686.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1088.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.65	1.76	2.85	4.02	4.09	7.84	11.29	3.42	7.67	8.54	14.07	5.01
Merged-chr7-125560709-3	chr7	125560609	125560809	+	686.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	PB1D9|SINE|Alu	8427.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.46	6.79	3.42	5.23	6.95	6.27	8.97	10.79	6.29	10.54	5.53	14.1
Merged-chr11-116434798-3	chr11	116434671	116434871	+	686.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176902, intron 2 of 2)	CpG-2855	558.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	9.29	4.02	4.56	10.46	6.55	7.53	4.98	9.28	9.24	7.53	14.07	15.04
Merged-chr1-87581040-2	chr1	87580917	87581117	+	686.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160163, intron 2 of 3)	intron (NM_001160163, intron 2 of 3)	-3005.0	NM_001160165	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	10.09	8.3	17.68	12.07	5.73	5.64	3.99	4.79	3.34	3.51	5.02	3.76
Merged-chr3-127762070-2	chr3	127761980	127762180	+	686.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	18447.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	8.48	5.53	9.13	3.22	7.36	8.47	4.98	7.29	7.67	3.51	4.02	6.58
Merged-chr9-37529781-2	chr9	37529684	37529884	+	686.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1695.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	7.67	6.54	12.55	0.0	10.23	10.35	5.65	5.05	9.05	5.52	4.52	5.33
Merged-chr4-24574462-3	chr4	24574341	24574541	+	686.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199467, exon 14 of 24)	exon (NM_199467, exon 14 of 24)	77990.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	7.67	6.29	8.56	4.02	12.27	5.33	7.31	7.09	8.65	9.54	25.12	10.96
Merged-chr8-95099182-1	chr8	95099082	95099282	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001145831)	TTS (NM_001145831)	14160.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	6.46	2.01	5.7	1.21	2.86	5.64	4.98	6.14	3.54	9.04	4.02	3.45
Merged-chr18-82815873-2	chr18	82815775	82815975	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40022.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	7.27	6.29	6.85	2.82	2.45	6.59	7.31	6.17	4.52	9.04	14.57	5.64
Merged-chr5-140611804-1	chr5	140611704	140611904	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	4463.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	2.42	5.03	0.57	1.21	4.09	9.72	6.64	4.49	5.11	3.01	2.01	1.25
Merged-chr1-39906226-1	chr1	39906126	39906326	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	5313.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.23	5.03	0.0	2.41	7.36	4.08	3.32	1.91	9.24	5.52	12.56	4.39
Merged-chr12-100492805-1	chr12	100492705	100492905	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 3 of 19)	intron (NM_001033213, intron 3 of 19)	28017.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.83	0.75	2.28	6.44	0.82	1.25	6.98	5.78	2.16	0.0	1.0	0.94
Merged-chr11-48779629-1	chr11	48779529	48779729	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20731.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	2.42	1.51	6.28	1.61	0.82	7.21	2.99	3.84	4.52	1.51	2.51	6.89
Merged-chr11-121795093-2	chr11	121794968	121795168	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35150.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	2.02	4.28	3.42	0.4	6.55	7.21	2.99	2.58	10.42	15.57	6.53	5.33
Merged-chr5-5481885-1	chr5	5481785	5481985	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2742.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	9.29	5.79	3.99	5.23	5.73	2.82	9.97	5.78	5.51	3.01	5.53	2.19
Merged-chr6-114297796-2	chr6	114297699	114297899	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	15164.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.04	5.28	9.13	6.84	2.86	7.84	2.99	5.89	6.1	2.51	10.55	3.76
Merged-chr7-19498479-1	chr7	19498379	19498579	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9852.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	2.42	3.27	5.7	11.26	9.82	11.92	8.64	8.16	5.7	3.51	8.04	9.71
Merged-chr2-118200061-1	chr2	118199961	118200161	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56905.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	5.65	0.5	2.85	0.8	1.64	8.78	2.33	6.42	7.28	3.01	5.02	4.7
Merged-chr7-102396507-1	chr7	102396407	102396607	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009287, intron 3 of 11)	RSINE1|SINE|B4	-45188.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	4.85	2.01	17.11	11.26	4.91	3.14	0.66	6.76	10.42	1.51	4.52	5.01
Merged-chr17-71599550-1	chr17	71599450	71599650	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-789.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	9.69	2.52	5.7	4.83	7.36	7.21	3.65	5.72	7.08	4.52	6.03	4.7
Merged-chr1-133135043-1	chr1	133134943	133135143	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3877.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	7.27	3.52	1.14	5.63	2.45	5.96	1.33	4.6	2.36	12.05	5.02	4.7
Merged-chr2-117195669-3	chr2	117195522	117195722	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10495.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	5.25	4.53	6.28	7.24	6.14	12.54	7.31	2.86	6.88	7.03	8.54	3.13
Merged-chr1-180807163-1	chr1	180807063	180807263	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008210, intron 3 of 3)	B3A|SINE|B2	6442.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	10.5	7.29	1.14	0.0	2.45	3.76	0.33	1.21	2.16	4.02	0.5	1.88
Merged-chr16-91463640-1	chr16	91463540	91463740	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-1464.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	11.31	3.27	4.56	0.8	2.86	10.98	4.98	5.47	8.06	3.01	9.04	5.33
Merged-chr11-86653624-1	chr11	86653524	86653724	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	17651.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	13.33	5.53	2.28	3.22	11.45	11.6	2.33	7.63	15.34	8.03	7.03	6.58
Merged-chr2-43794126-1	chr2	43794026	43794226	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	45302.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.65	1.01	5.7	6.44	6.55	2.82	1.66	5.8	9.05	5.52	5.53	5.33
Merged-chr5-16326853-1	chr5	16326753	16326953	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110843, intron 20 of 38)	intron (NM_001110843, intron 20 of 38)	-226642.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.81	1.01	6.85	2.01	5.32	4.39	11.29	5.27	3.15	0.5	5.53	4.7
Merged-chr10-36888335-2	chr10	36888222	36888422	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86222.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	8.88	1.51	4.56	9.25	4.91	4.08	5.31	8.55	5.9	5.52	2.01	5.01
Merged-chr12-85462966-1	chr12	85462866	85463066	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10924.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.86	7.55	5.7	2.82	9.41	4.7	1.66	5.41	5.31	7.03	5.53	2.82
Merged-chr10-44776414-1	chr10	44776314	44776514	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-290800.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.46	4.78	4.56	2.82	4.91	3.14	5.98	9.98	5.51	2.01	6.03	7.21
Merged-chr1-194999675-1	chr1	194999575	194999775	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17724.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	2.42	2.01	5.7	6.84	4.09	6.59	1.33	7.88	5.31	4.52	9.04	0.94
Merged-chr4-152011052-1	chr4	152010952	152011152	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	2161.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	5.25	9.06	5.13	8.04	9.82	1.25	4.65	4.46	6.69	5.02	2.51	3.45
Merged-chr6-89200923-1	chr6	89200823	89201023	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15256.0	NR_033190	330379.0	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	0.0	0.0	0.0	0.0	8.59	12.23	8.64	4.68	9.64	3.01	5.53	5.01
Merged-chr11-69614215-3	chr11	69614120	69614320	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011367)	TTS (NM_011367)	3685.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	9.69	6.29	9.7	3.22	8.18	6.9	3.65	1.09	9.64	5.02	7.03	11.28
Merged-chr18-47998129-1	chr18	47998029	47998229	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	-47206.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.04	3.77	1.14	2.41	6.14	3.76	2.66	9.62	0.98	3.01	6.03	2.82
Merged-chr8-41199089-1	chr8	41198989	41199189	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145594, intron 5 of 7)	intron (NM_145594, intron 5 of 7)	16067.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.0	1.26	0.0	0.0	2.86	2.51	5.98	4.29	2.75	1.0	4.02	0.63
Merged-chr16-16473567-1	chr16	16473467	16473667	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 7 of 16)	RLTR10D2|LTR|ERVK	53844.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.86	4.53	6.85	8.45	7.77	8.78	7.97	6.39	4.72	6.53	10.55	4.39
Merged-chr15-99265847-2	chr15	99265738	99265938	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13877.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	12.11	9.81	1.71	6.03	3.68	4.08	7.31	5.69	6.1	9.04	4.52	10.02
Merged-chr13-35452632-2	chr13	35452549	35452749	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-207213.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.85	5.03	14.26	6.84	4.91	3.76	8.3	7.12	2.36	4.02	7.54	4.7
Merged-chr11-58024843-1	chr11	58024743	58024943	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	15779.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	10.5	9.56	4.56	1.21	6.55	10.35	3.32	2.55	8.06	2.01	4.02	1.57
Merged-chr10-79988555-1	chr10	79988455	79988655	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	-45.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	6.46	6.79	8.56	4.02	5.32	5.64	1.99	4.18	4.92	9.54	7.03	7.52
Merged-chrX-20365747-1	chrX	20365647	20365847	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290644, intron 2 of 5)	intron (NM_001290644, intron 2 of 5)	1266.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	3.63	1.01	6.85	5.63	3.27	10.03	3.32	5.19	3.93	1.51	2.01	5.01
Merged-chr8-128941399-1	chr8	128941299	128941499	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	124093.0	NM_029061	74703.0	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	5.65	6.04	5.13	3.22	9.41	3.14	5.31	1.65	12.59	4.02	9.55	6.58
Merged-chr5-99229719-1	chr5	99229619	99229819	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 8 of 13)	MER58B|DNA|hAT-Charlie	23208.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.42	3.52	1.14	0.8	8.18	9.72	1.33	0.5	5.51	2.51	2.01	0.63
Merged-chr17-71012140-1	chr17	71012040	71012240	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-7417.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	6.46	1.51	1.71	3.22	3.68	3.76	4.98	5.66	4.13	7.03	18.59	2.19
Merged-chr15-24596471-2	chr15	24596370	24596570	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	817294.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	1.01	1.71	0.8	4.5	5.96	11.96	6.87	9.05	5.02	11.56	5.95
Merged-chr5-105507509-1	chr5	105507409	105507609	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11962.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.44	1.01	3.42	1.21	6.95	3.76	1.66	9.73	0.0	0.0	1.51	0.0
Merged-chr17-56479562-2	chr17	56479457	56479657	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3077.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.85	8.8	0.0	5.63	9.0	7.53	4.65	8.89	6.69	9.54	6.03	5.33
Merged-chr19-29370701-1	chr19	29370601	29370801	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	B2_Mm2|SINE|B2	3263.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	8.08	4.28	2.28	0.0	1.64	1.25	0.0	0.79	9.44	8.03	12.56	4.07
Merged-chr18-46604495-2	chr18	46604390	46604590	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	6786.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	6.46	6.54	5.7	2.41	4.09	10.66	5.98	6.22	9.24	7.03	5.53	9.08
Merged-chr14-45652238-1	chr14	45652138	45652338	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	B3|SINE|B2	5815.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	1.21	2.01	5.7	2.01	2.05	1.57	2.99	3.06	6.69	12.55	10.05	4.39
Merged-chr2-59889443-3	chr2	59889346	59889546	+	685.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-6840.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	9.69	6.29	15.4	7.64	6.95	3.45	13.95	8.72	11.8	5.52	12.56	12.84
Merged-chr7-19076732-2	chr7	19076627	19076827	+	685.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	527.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.04	7.55	4.56	8.85	1.23	5.33	7.31	5.33	10.82	6.03	12.06	10.02
Merged-chr1-165660961-2	chr1	165660860	165661060	+	685.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26419.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.06	9.81	4.56	1.61	14.32	10.35	5.98	3.22	10.82	7.03	9.55	5.01
Merged-chr8-109862730-2	chr8	109862610	109862810	+	685.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-5893.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	2.02	4.02	0.0	11.66	6.55	6.27	5.98	10.54	7.08	6.53	11.56	3.76
Merged-chr13-43269158-2	chr13	43269057	43269257	+	685.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033399, intron 1 of 1)	MER21B|LTR|ERVL	35015.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	2.42	8.55	7.42	2.01	9.0	7.21	11.63	6.79	9.24	2.51	7.54	2.51
Merged-chr6-49074697-2	chr6	49074596	49074796	+	685.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029353, intron 1 of 3)	intron (NM_029353, intron 1 of 3)	901.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	2.42	3.77	9.13	0.8	8.59	8.47	2.66	3.87	7.28	7.53	15.07	9.4
Merged-chr11-70280668-3	chr11	70280579	70280779	+	685.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25309.0	NM_007440	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	11.71	7.55	2.28	4.02	10.64	12.86	8.3	7.79	8.06	3.51	20.6	4.7
Merged-chr15-77542042-1	chr15	77541942	77542142	+	685.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8727.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	6.86	4.78	5.7	0.4	0.41	7.21	1.66	2.58	16.33	12.05	10.55	7.52
Merged-chr4-99116065-3	chr4	99115978	99116178	+	685.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	4837.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	6.06	5.79	9.7	6.44	9.41	6.9	9.63	16.26	7.47	16.57	11.05	7.52
Merged-chr14-45659762-2	chr14	45659670	45659870	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1627.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	2.42	6.04	6.28	7.24	18.41	10.35	4.98	7.96	9.05	7.53	9.55	5.95
Merged-chr10-84387432-1	chr10	84387332	84387532	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	53039.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.85	3.02	4.56	4.02	5.73	8.15	5.98	5.33	1.97	1.0	1.51	3.76
Merged-chr17-27708130-2	chr17	27708051	27708251	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286743, intron 9 of 9)	intron (NM_001286743, intron 9 of 9)	20800.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	2.83	4.02	2.28	0.8	7.77	6.27	5.98	6.0	12.98	11.05	9.04	3.13
Merged-chr15-67415938-2	chr15	67415861	67416061	+	685.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	189192.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	6.86	7.29	9.13	6.03	6.14	8.47	3.32	12.0	3.74	7.03	1.51	2.51
Merged-chr14-41033560-2	chr14	41033448	41033648	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19715.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	4.44	1.51	2.85	0.0	5.32	3.76	4.98	7.29	8.85	8.03	14.07	1.88
Merged-chr2-103872138-3	chr2	103872038	103872238	+	685.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28813.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	7.27	6.54	7.42	10.05	9.0	9.41	6.31	11.52	6.88	14.56	9.04	8.46
Merged-chr6-121210749-3	chr6	121210704	121210904	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017379)	promoter-TSS (NM_017379)	70.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	2.83	7.29	11.41	5.23	6.14	5.33	2.99	7.23	7.08	5.52	9.04	5.95
Merged-chr14-105296335-1	chr14	105296235	105296435	+	685.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	37662.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	6.46	10.56	9.13	8.04	8.18	13.8	5.65	7.35	7.87	5.52	10.05	4.39
Merged-chr4-11602651-3	chr4	11602557	11602757	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22995.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	9.69	9.56	14.83	4.42	13.09	8.78	4.65	6.64	11.21	6.53	12.06	7.83
Merged-chr8-8689426-3	chr8	8689301	8689501	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106114)	TTS (NR_106114)	761.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	9.69	10.56	5.7	7.64	9.41	7.21	7.64	11.55	22.42	11.55	13.06	7.83
Merged-chr12-25098029-3	chr12	25097944	25098144	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1952.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	6.86	7.55	6.85	12.07	4.5	8.15	8.64	6.14	7.87	11.05	6.03	11.28
Merged-chr13-37947006-3	chr13	37946892	37947092	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033615, exon 9 of 10)	non-coding (NR_033615, exon 9 of 10)	47216.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.06	5.03	5.7	8.45	9.0	5.96	6.98	7.99	5.51	5.02	13.57	10.65
Merged-chr19-10959736-3	chr19	10959633	10959833	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10467.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	9.29	8.05	2.28	9.65	11.05	4.39	1.66	8.58	7.28	8.54	1.51	3.13
Merged-chr1-79786714-2	chr1	79786619	79786819	+	685.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10701.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	11.31	7.04	2.28	4.83	4.5	4.7	4.32	7.07	11.6	6.53	11.05	6.27
Merged-chr10-40057769-3	chr10	40057623	40057823	+	685.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-32455.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	6.46	3.27	1.71	8.04	5.73	1.57	6.98	5.27	8.65	4.52	11.56	3.76
Merged-chr11-58179760-3	chr11	58179663	58179863	+	685.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175001)	TTS (NM_175001)	-4080.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	4.04	9.31	9.13	10.46	8.18	15.05	1.0	4.23	15.74	26.61	26.13	10.96
Merged-chr19-56069111-3	chr19	56069016	56069216	+	685.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173795.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	13.33	6.54	9.13	9.65	11.05	7.53	9.63	9.76	9.83	8.03	9.55	5.95
Merged-chr9-95563432-3	chr9	95563330	95563530	+	685.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3613.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.86	4.02	7.99	6.44	2.86	6.27	17.61	16.04	10.42	5.52	12.06	8.77
Merged-chr6-37448099-3	chr6	37447981	37448181	+	685.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5933.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	10.5	7.55	10.27	5.63	4.09	16.31	8.64	6.81	8.85	16.07	8.54	5.33
Merged-chr16-32707558-1	chr16	32707458	32707658	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28328.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.4	2.01	3.99	0.0	6.95	6.27	3.99	5.69	4.92	4.52	5.53	7.52
Merged-chr19-34921711-1	chr19	34921611	34921811	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-647.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	3.63	5.28	3.42	3.22	7.36	9.72	8.64	5.36	7.47	4.02	6.53	6.89
Merged-chr12-75734063-4	chr12	75733943	75734143	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	1686.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	1.62	1.01	0.57	0.8	7.36	9.72	3.32	2.36	3.15	3.51	4.52	2.19
Merged-chr1-186706082-1	chr1	186705982	186706182	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	-93.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	2.42	5.53	4.56	4.02	8.18	6.27	3.32	10.07	5.7	7.03	4.52	3.13
Merged-chr6-29396578-2	chr6	29396457	29396657	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347072)	promoter-TSS (NM_001347072)	-18.0	NM_001347071	232664.0	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	16.96	6.79	10.84	5.23	4.5	3.76	2.99	7.77	7.08	7.03	13.06	2.19
Merged-chr15-97817141-1	chr15	97817041	97817241	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2278.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	1.21	0.5	0.0	0.8	19.23	9.41	5.65	3.9	6.1	4.52	0.0	4.07
Merged-chr9-53673785-1	chr9	53673685	53673885	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6278.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	4.85	3.02	1.14	7.64	7.77	9.41	8.64	5.69	9.24	5.52	9.04	3.76
Merged-chr7-114416003-3	chr7	114415928	114416128	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029437)	promoter-TSS (NR_029437)	774.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	5.65	4.02	4.56	13.27	2.05	5.64	4.98	4.79	6.29	8.03	5.53	6.27
Merged-chrX-6400006-3	chrX	6399914	6400114	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040459)	promoter-TSS (NM_001040459)	-18.0	NM_001040459	208431.0	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	8.48	4.53	3.42	11.26	13.91	10.66	5.65	9.0	7.87	13.56	10.55	5.33
Merged-chr7-66661773-2	chr7	66661686	66661886	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080443, intron 4 of 5)	B3A|SINE|B2	27775.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	7.27	6.04	13.69	9.25	5.73	10.98	8.97	8.94	9.24	13.56	2.51	5.01
Merged-chr3-89281233-2	chr3	89281139	89281339	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-288.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	3.63	6.04	6.85	14.08	14.32	6.27	3.32	6.42	7.08	4.52	3.52	13.16
Merged-chr18-53857838-2	chr18	53857743	53857943	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	8.88	8.55	1.14	6.84	11.45	8.78	5.98	9.56	0.98	5.52	10.05	3.13
Merged-chr3-137938703-1	chr3	137938603	137938803	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 6 of 8)	intron (NM_011932, intron 6 of 8)	20148.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	2.42	3.27	3.99	2.82	8.59	6.59	3.32	5.38	7.08	2.01	9.55	7.21
Merged-chr5-123344439-3	chr5	123344351	123344551	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029850)	promoter-TSS (NM_029850)	3.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	5.25	6.04	11.98	6.84	6.55	4.7	1.33	9.06	10.03	3.51	12.06	8.14
Merged-chr2-84381359-1	chr2	84381259	84381459	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43907.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.25	6.54	0.0	4.42	11.45	7.21	2.66	6.0	2.16	9.54	3.52	0.94
Merged-chr2-142813194-2	chr2	142813094	142813294	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	88270.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	8.48	5.03	5.7	10.46	2.45	6.59	9.63	7.96	7.08	7.53	7.03	3.45
Merged-chr10-128612816-2	chr10	128612717	128612917	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13689.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	3.23	7.55	1.14	2.41	6.14	5.33	4.98	5.13	12.19	9.04	11.56	14.1
Merged-chr3-19562610-2	chr3	19562511	19562711	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163536, intron 2 of 4)	intron (NM_001163536, intron 2 of 4)	31364.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	4.04	3.27	6.28	2.01	9.82	7.21	1.0	6.59	11.21	7.03	12.06	4.7
Merged-chr1-189927840-1	chr1	189927740	189927940	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5549.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	1.62	2.77	0.0	8.45	2.45	6.27	4.98	6.7	2.75	3.51	11.05	3.45
Merged-chr3-8981021-2	chr3	8980909	8981109	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MTD|LTR|ERVL-MaLR	-16863.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.06	8.05	7.99	4.42	7.36	6.27	6.31	10.82	7.87	1.51	2.01	3.45
Merged-chr10-17579006-2	chr10	17578925	17579125	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144203.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.42	1.51	7.99	4.02	13.09	5.33	8.97	7.77	7.67	4.52	12.56	5.33
Merged-chr15-38404092-2	chr15	38403971	38404171	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	86476.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.65	4.78	7.42	11.26	8.18	7.21	6.64	8.72	4.92	5.02	3.01	3.45
Merged-chr4-32950922-1	chr4	32950822	32951022	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001012451)	promoter-TSS (NM_001012451)	-96.0	NM_001012451	140577.0	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	6.86	7.04	4.56	6.44	6.14	6.27	4.98	12.98	3.74	4.02	14.57	6.89
Merged-chr12-85758999-1	chr12	85758899	85759099	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145447, intron 1 of 9)	LTR31|LTR|ERV1	12460.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	1.21	2.26	1.14	3.22	4.91	6.59	7.64	6.08	6.69	5.52	3.52	5.01
Merged-chr13-58232835-2	chr13	58232727	58232927	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019832)	TTS (NM_019832)	-17174.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	4.44	5.79	14.83	8.85	1.64	3.76	7.97	4.88	13.96	3.51	18.09	4.07
Merged-chrX-155168086-1	chrX	155167986	155168186	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-20237.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	2.42	1.26	0.0	0.8	3.27	6.59	8.97	6.17	0.2	3.51	2.01	0.63
Merged-chr18-56799868-2	chr18	56799793	56799993	+	685.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177115, intron 3 of 4)	L1MC1|LINE|L1	92080.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	11.31	10.06	9.7	5.23	4.09	5.64	4.98	5.75	1.57	0.0	3.52	3.76
Merged-chr12-100022256-3	chr12	100022161	100022361	+	685.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57762.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	11.31	4.53	7.99	9.25	15.14	8.15	5.65	5.27	16.52	9.54	13.57	4.7
Merged-chr5-117413995-4	chr5	117413829	117414029	+	685.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-73.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.63	4.53	7.99	4.83	10.23	2.82	7.31	3.93	10.62	8.54	13.57	6.89
Merged-chr2-51090775-2	chr2	51090697	51090897	+	685.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58314.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	1.62	1.76	0.0	2.01	4.5	5.33	6.31	5.02	10.62	2.51	7.54	3.13
Merged-chr2-71336484-2	chr2	71336374	71336574	+	685.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	31080.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.81	0.5	1.14	2.41	8.59	12.54	7.31	10.57	6.69	11.05	11.05	8.46
Merged-chr7-103861155-1	chr7	103861055	103861255	+	685.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7948.0	NM_008221	15135.0	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	7.67	2.01	0.0	2.01	7.36	5.64	4.65	8.27	1.18	0.0	4.52	3.76
Merged-chr9-69518447-1	chr9	69518347	69518547	+	685.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61503.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.81	3.77	0.0	0.0	7.36	7.21	4.98	5.78	3.34	1.0	3.01	0.63
Merged-chr5-113221382-1	chr5	113221282	113221482	+	685.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-5527.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	21.0	8.05	12.55	8.04	6.55	2.2	4.65	3.06	1.57	0.0	0.0	3.76
Merged-chr7-128247675-3	chr7	128247575	128247775	+	685.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289553, intron 1 of 9)	intron (NM_001289553, intron 1 of 9)	863.0	NM_001289552	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	2.83	8.55	11.98	8.04	4.09	3.76	3.99	8.24	13.77	11.55	10.05	5.95
Merged-chr9-107678291-1	chr9	107678191	107678391	+	685.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008140, intron 1 of 8)	intron (NM_008140, intron 1 of 8)	1301.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	6.06	6.29	5.7	5.23	4.09	5.64	2.33	7.07	11.41	12.05	12.56	8.77
Merged-chr2-57239206-3	chr2	57239089	57239289	+	685.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	807.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	2.83	1.01	11.41	6.84	6.14	6.9	3.65	6.17	8.65	10.04	6.53	6.58
Merged-chr2-79512078-3	chr2	79511979	79512179	+	685.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55443.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	2.83	6.79	3.99	11.26	6.55	14.11	13.29	13.18	11.01	2.51	5.53	5.95
Merged-chr13-107825873-2	chr13	107825779	107825979	+	685.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	64185.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.04	3.02	2.28	2.82	2.45	1.57	5.65	10.21	19.08	9.54	14.07	10.96
Merged-chr5-113667565-2	chr5	113667469	113667669	+	685.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17179.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.23	2.77	1.71	7.24	7.36	6.27	7.31	6.73	9.44	8.54	9.55	6.58
Merged-chr4-133092734-3	chr4	133092621	133092821	+	685.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37912.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	7.27	9.06	3.42	4.42	9.0	5.02	15.28	6.59	6.88	9.54	5.53	10.65
Merged-chr9-40482675-2	chr9	40482571	40482771	+	685.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	B1_Mus1|SINE|Alu	-26907.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	5.03	7.42	6.44	5.32	7.21	8.3	2.3	0.79	0.5	0.0	2.51
Merged-chr3-115704440-2	chr3	115704342	115704542	+	685.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10613.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.42	4.02	4.56	4.83	6.55	5.96	10.3	9.17	11.01	9.54	15.58	10.96
Merged-chr11-106463237-3	chr11	106463143	106463343	+	685.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	RSINE1|SINE|B4	24553.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	10.5	9.81	13.69	17.7	6.14	5.64	4.98	7.51	12.0	6.53	15.58	7.83
Merged-chr8-25034767-3	chr8	25034663	25034863	+	685.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081187, intron 3 of 8)	B2_Mm2|SINE|B2	4199.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	13.73	7.29	8.56	4.42	10.64	12.54	4.98	6.28	12.59	11.55	15.58	3.13
Merged-chr11-85506503-3	chr11	85506398	85506598	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 15 of 25)	B1_Mur4|SINE|Alu	153334.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	6.46	3.77	11.41	8.45	11.45	8.47	11.29	12.73	10.03	4.02	6.53	6.89
Merged-chr15-97361846-3	chr15	97361751	97361951	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-114564.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	6.86	5.28	7.99	11.26	9.41	1.25	5.65	7.21	6.88	11.55	9.04	5.33
Merged-chr18-67457746-3	chr18	67457626	67457826	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7123.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	6.06	8.3	2.85	10.46	9.41	6.59	4.65	13.35	9.83	9.04	14.57	3.45
Merged-chr17-86964211-1	chr17	86964111	86964311	+	685.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	1100.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.85	7.04	2.28	2.01	10.23	10.03	9.3	5.33	8.46	7.53	7.03	3.13
Merged-chr8-69094322-3	chr8	69094214	69094414	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	B3A|SINE|B2	-5092.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	4.44	10.31	8.56	8.85	7.77	9.72	6.64	12.36	11.21	9.54	10.05	5.95
Merged-chr11-22002041-2	chr11	22001944	22002144	+	685.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011023)	promoter-TSS (NM_011023)	-393.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	2.83	7.55	2.28	10.46	9.41	6.27	8.97	8.36	2.56	9.04	12.06	3.45
Merged-chr19-21942512-2	chr19	21942411	21942611	+	685.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	164171.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.81	2.52	4.56	0.0	1.23	4.08	6.64	5.38	11.6	15.57	13.57	5.95
Merged-chr16-91373546-2	chr16	91373439	91373639	+	685.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	756.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.06	3.52	8.56	5.63	6.14	11.6	11.29	6.25	7.67	2.51	10.55	10.02
Merged-chr4-86904184-2	chr4	86904096	86904296	+	685.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	29782.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.0	4.02	8.56	10.86	4.91	6.27	13.62	6.08	4.33	0.5	3.52	2.19
Merged-chr1-74124568-3	chr1	74124475	74124675	+	685.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-126.0	NM_001289895	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	8.48	4.02	7.99	9.65	16.77	4.39	7.64	7.21	9.83	7.53	13.06	6.27
Merged-chr10-44735936-3	chr10	44735827	44736027	+	685.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-277179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.86	7.55	7.99	2.82	11.05	9.09	10.63	5.86	10.82	9.04	4.52	4.39
Merged-chr10-23812310-3	chr10	23812252	23812452	+	685.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	15366.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	3.23	4.53	6.85	4.42	5.73	2.51	4.65	6.34	3.54	9.04	13.57	8.77
Merged-chr5-136933397-2	chr5	136933317	136933517	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015555, intron 3 of 3)	(ACGTG)n|Simple_repeat|Simple_repeat	14271.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	4.04	3.77	11.41	9.25	5.32	5.64	4.32	0.36	16.13	6.53	5.02	10.02
Merged-chr6-47779544-1	chr6	47779444	47779644	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	24108.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	1.01	0.57	0.8	0.0	0.0	0.0	0.0	9.24	14.06	6.03	9.4
Merged-chr2-112501316-1	chr2	112501216	112501416	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028844, intron 1 of 5)	intron (NM_028844, intron 1 of 5)	8352.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	2.02	5.03	0.0	3.62	5.32	6.27	3.99	5.83	3.74	2.51	8.54	2.82
Merged-chr2-155383303-2	chr2	155383187	155383387	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	1431.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.85	4.28	8.56	9.25	6.14	6.59	4.32	6.06	7.87	5.52	8.54	8.46
Merged-chr19-57197495-1	chr19	57197395	57197595	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290816, exon 1 of 21)	5' UTR (NM_001290816, exon 1 of 21)	136.0	NM_001103177	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	1.21	2.77	1.14	0.0	2.45	6.59	0.33	5.27	0.39	0.0	3.01	1.57
Merged-chr15-96698165-1	chr15	96698065	96698265	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175121, intron 3 of 15)	intron (NM_175121, intron 3 of 15)	1563.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.86	3.27	3.42	7.24	6.14	6.9	1.33	2.64	11.8	7.03	7.54	6.58
Merged-chr14-16373979-1	chr14	16373879	16374079	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	8773.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.25	1.01	6.85	11.26	1.64	1.88	5.31	6.2	10.42	5.02	5.53	5.64
Merged-chr7-43797282-1	chr7	43797182	43797382	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008940)	promoter-TSS (NM_008940)	-295.0	NM_001324398	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	3.23	3.27	0.57	4.02	2.45	5.64	3.32	2.89	2.75	3.01	4.02	3.45
Merged-chr1-53883394-1	chr1	53883294	53883494	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	33970.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	3.23	2.01	1.71	8.04	4.5	3.45	5.31	6.36	3.74	4.52	3.01	1.57
Merged-chr14-87213278-1	chr14	87213178	87213378	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72054.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.63	4.53	13.69	9.25	3.27	2.51	5.31	14.07	0.0	0.0	1.0	0.31
Merged-chr6-40446014-1	chr6	40445914	40446114	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201370, intron 2 of 11)	L2c|LINE|L2	3151.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	1.62	2.01	9.13	2.82	1.64	3.14	9.3	5.64	3.74	0.5	3.01	3.13
Merged-chr13-20114551-2	chr13	20114455	20114655	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	24048.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	21.0	7.55	13.69	7.24	11.05	10.35	4.98	7.07	12.39	8.54	10.55	8.46
Merged-chr6-124278394-1	chr6	124278294	124278494	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-26257.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.44	1.51	4.56	0.8	6.55	2.2	7.31	6.62	4.52	4.02	5.53	2.51
Merged-chr2-73442236-1	chr2	73442136	73442336	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289722, intron 3 of 7)	ORR1G|LTR|ERVL-MaLR	11653.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	1.62	3.02	1.71	5.23	2.86	6.59	1.99	6.39	5.31	2.01	3.52	8.46
Merged-chr7-59984132-1	chr7	59984032	59984232	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_146211, intron 13 of 171)	Lx7|LINE|L1	-5276.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	1.62	2.26	0.0	6.03	4.5	2.51	3.99	4.18	3.93	1.51	7.54	3.76
Merged-chr3-109360959-1	chr3	109360859	109361059	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	20276.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.81	2.52	2.28	3.22	9.82	3.76	1.33	6.2	1.57	9.04	9.55	2.51
Merged-chr5-20767385-1	chr5	20767285	20767485	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 14 of 17)	intron (NM_172992, intron 14 of 17)	114739.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.04	0.5	1.14	7.64	3.27	4.39	4.65	8.8	10.62	4.02	2.01	7.52
Merged-chr2-153048311-1	chr2	153048211	153048411	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001011732, intron 1 of 2)	L2b|LINE|L2	16459.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	4.85	1.26	3.42	2.41	1.23	2.51	2.99	2.44	10.23	6.03	2.01	8.14
Merged-chr5-111036383-2	chr5	111036284	111036484	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32240.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	8.48	8.8	4.56	8.04	9.41	8.78	1.33	1.37	4.52	4.52	6.53	1.57
Merged-chr6-122562699-1	chr6	122562599	122562799	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009645, exon 5 of 5)	3' UTR (NM_009645, exon 5 of 5)	8890.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.44	10.06	7.99	1.61	5.73	5.64	1.66	6.2	9.05	14.06	6.03	6.58
Merged-chr9-25253464-1	chr9	25253364	25253564	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	572.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	8.88	5.79	3.42	9.65	6.95	10.98	3.99	10.09	11.8	13.05	8.04	7.83
Merged-chr9-50907146-1	chr9	50907046	50907246	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	50222.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	2.42	0.25	5.13	0.0	7.77	0.63	1.33	4.82	2.75	0.0	5.53	4.39
Merged-chr16-20674182-1	chr16	20674082	20674282	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145941, intron 2 of 32)	intron (NM_145941, intron 2 of 32)	1455.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	4.04	6.29	2.85	3.62	4.91	11.92	5.98	5.52	3.93	9.04	4.52	6.27
Merged-chr4-101069715-1	chr4	101069615	101069815	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183024, intron 1 of 11)	CpG	677.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.23	1.51	0.0	4.83	2.86	3.45	9.63	5.05	2.56	1.51	6.53	0.94
Merged-chr12-13498898-1	chr12	13498798	13498998	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	128748.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	2.42	2.52	3.42	8.85	3.27	4.39	2.66	8.41	2.95	2.51	1.51	1.88
Merged-chr12-117403771-1	chr12	117403671	117403871	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66759.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	1.21	4.28	2.28	5.23	3.27	3.14	6.64	6.93	4.92	1.0	6.03	5.33
Merged-chr11-70647987-1	chr11	70647887	70648087	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024211)	promoter-TSS (NM_024211)	700.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	4.44	4.02	2.28	1.61	3.27	9.09	1.99	1.51	10.03	5.52	2.01	7.52
Merged-chr9-58903089-1	chr9	58902989	58903189	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001042752, exon 20 of 28)	exon (NM_001042752, exon 20 of 28)	79577.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	8.08	5.79	1.14	2.41	3.27	5.64	1.33	7.54	11.01	4.02	2.01	8.77
Merged-chr15-100419720-1	chr15	100419620	100419820	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008732, intron 1 of 16)	B1_Mur4|SINE|Alu	3335.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.4	2.01	3.42	0.0	0.41	1.25	0.33	0.28	1.38	5.02	0.5	1.25
Merged-chr18-84199397-1	chr18	84199297	84199497	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111239.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.4	0.75	2.28	6.03	6.55	1.25	3.99	8.75	3.15	1.0	4.02	2.82
Merged-chr3-123386940-1	chr3	123386840	123387040	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-950.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.81	0.25	2.28	0.0	1.64	1.25	1.0	0.11	7.87	9.54	3.52	5.64
Merged-chr10-12548599-1	chr10	12548499	12548699	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	313136.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.63	4.02	4.56	2.01	2.05	4.08	3.99	4.99	3.15	6.53	2.01	3.45
Merged-chr6-73748571-1	chr6	73748471	73748671	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-277550.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.4	0.0	3.42	2.82	4.91	0.63	5.31	7.79	2.56	3.51	4.02	1.25
Merged-chr5-121721550-2	chr5	121721447	121721647	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	9938.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	3.63	7.55	19.4	12.07	9.0	7.21	3.65	3.14	9.44	8.54	4.02	10.65
Merged-chr12-69132146-1	chr12	69132046	69132246	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	27040.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	5.25	6.54	6.28	5.23	11.45	9.72	4.32	3.36	5.31	3.51	11.56	3.13
Merged-chr16-33261764-1	chr16	33261664	33261864	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080557, intron 1 of 13)	RMER4A|LTR|ERVK	10308.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	5.25	3.27	5.13	4.02	6.55	4.39	5.31	4.96	3.93	4.52	1.51	2.51
Merged-chr1-133679681-1	chr1	133679581	133679781	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172842, exon 6 of 6)	3' UTR (NM_172842, exon 6 of 6)	10335.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	5.65	5.28	5.7	11.66	3.27	3.45	5.65	4.12	4.52	2.01	3.01	5.33
Merged-chr13-40866600-1	chr13	40866500	40866700	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023887, intron 1 of 2)	RMER16_Mm|LTR|ERVK	6832.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	2.42	3.77	8.56	2.82	9.82	1.88	4.32	7.74	3.74	3.51	6.03	2.51
Merged-chr2-5708287-2	chr2	5708180	5708380	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	6482.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	8.48	3.77	13.12	10.46	4.5	4.08	4.32	6.42	7.87	0.5	10.55	7.21
Merged-chr2-160213273-1	chr2	160213173	160213373	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114221.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	8.08	5.79	5.7	7.64	10.64	6.27	4.65	5.24	3.93	6.03	8.54	3.45
Merged-chr13-113352748-2	chr13	113352647	113352847	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	143088.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	8.48	6.79	12.55	15.69	4.09	5.02	6.64	7.54	7.28	14.06	9.55	4.07
Merged-chr7-92893706-3	chr7	92893602	92893802	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	B2_Mm2|SINE|B2	18449.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.86	5.03	5.7	8.45	4.91	16.93	2.99	4.93	15.14	12.05	12.06	5.95
Merged-chr2-91138768-3	chr2	91138681	91138881	+	684.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	20637.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	15.34	4.78	9.13	8.85	9.0	6.9	6.98	8.72	10.23	11.55	15.07	11.9
Merged-chr4-125125800-3	chr4	125125669	125125869	+	684.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2112.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.25	7.29	3.42	1.21	7.77	4.08	1.66	4.57	7.28	4.52	6.53	5.95
Merged-chr1-167000765-3	chr1	167000677	167000877	+	684.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175461)	promoter-TSS (NM_175461)	-640.0	NM_175461	226610.0	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	5.65	6.04	3.99	3.22	5.32	6.27	6.64	6.31	7.08	7.03	13.57	10.02
Merged-chrX-36899158-3	chrX	36899059	36899259	+	684.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029891, intron 1 of 2)	B2_Mm2|SINE|B2	3740.0	NM_029891	77286.0	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	9.69	4.78	12.55	13.67	5.32	9.41	3.99	5.69	18.29	17.07	26.63	6.27
Merged-chr12-112543103-3	chr12	112542990	112543190	+	684.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31930.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	4.44	7.55	11.41	7.24	8.18	10.98	5.98	9.17	9.05	10.04	10.55	11.59
Merged-chr1-128549678-3	chr1	128549574	128549774	+	684.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	42625.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	14.94	7.04	16.54	8.04	6.55	7.84	11.96	8.61	10.03	9.54	9.04	3.13
Merged-chr16-85064979-2	chr16	85064874	85065074	+	684.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	92763.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.5	0.0	0.0	6.55	8.78	2.99	10.6	6.88	9.54	18.59	5.64
Merged-chr2-174069817-3	chr2	174069702	174069902	+	684.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7249.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	3.23	7.04	12.55	8.04	11.05	8.15	15.61	23.07	9.44	3.51	21.1	6.58
Merged-chr11-118494694-2	chr11	118494601	118494801	+	684.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17869.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	8.48	4.28	2.28	9.25	9.41	8.15	4.65	11.05	7.87	7.53	3.01	5.01
Merged-chr3-88939951-3	chr3	88939863	88940063	+	684.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164533, intron 2 of 11)	B3|SINE|B2	10319.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	6.86	4.78	7.99	9.25	4.91	6.9	0.0	11.89	10.42	9.54	9.04	12.53
Merged-chr14-25412325-3	chr14	25412246	25412446	+	684.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46839.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	9.29	5.03	21.11	4.42	6.14	21.01	6.64	8.5	7.87	10.04	16.08	3.45
Merged-chr3-103735216-3	chr3	103735024	103735224	+	684.817444	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133859)	TTS (NM_133859)	2877.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	2.02	4.53	4.56	5.63	2.45	4.08	5.98	4.4	10.82	10.04	18.09	7.83
Merged-chr10-60341376-2	chr10	60341295	60341495	+	684.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	MTEb|LTR|ERVL-MaLR	-5456.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.85	4.28	2.85	3.62	8.59	10.03	6.64	6.11	8.65	10.04	11.05	10.34
Merged-chr11-3127221-1	chr11	3127121	3127321	+	684.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	3200.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	21.0	18.86	18.83	20.51	32.32	19.13	30.89	10.21	8.85	12.05	11.05	10.34
Merged-chr11-101260608-2	chr11	101260569	101260769	+	684.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175638, exon 1 of 19)	5' UTR (NM_175638, exon 1 of 19)	102.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	3.23	7.04	2.28	6.03	3.68	3.45	2.33	3.08	5.7	1.0	1.0	6.89
Merged-chr10-60280537-2	chr10	60280446	60280646	+	684.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	2918.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	2.83	5.53	1.14	1.61	4.5	12.54	2.99	4.79	10.62	5.02	8.04	7.52
Merged-chr10-81395396-2	chr10	81395298	81395498	+	684.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008688)	TTS (NM_008688)	2334.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	7.67	4.53	1.14	6.44	8.18	11.6	5.98	6.25	7.08	3.51	8.54	9.71
Merged-chr17-83872949-3	chr17	83872871	83873071	+	684.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18553.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	9.29	4.53	8.56	6.44	4.5	10.98	6.98	12.59	11.41	11.55	18.09	13.47
Merged-chr16-4608018-3	chr16	4607927	4608127	+	684.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	13314.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	8.08	7.55	11.98	4.02	8.59	10.66	4.65	7.26	14.55	16.57	7.03	4.39
Merged-chr1-179832969-3	chr1	179832896	179833096	+	684.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-28981.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	4.85	8.05	2.85	12.47	4.09	7.21	4.32	5.97	7.87	4.02	6.03	5.33
Merged-chr2-31130934-2	chr2	31130840	31131040	+	684.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	11068.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	10.9	7.55	11.41	4.42	10.64	7.21	6.64	8.19	11.21	6.03	7.03	3.45
Merged-chr3-105824406-2	chr3	105824323	105824523	+	684.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8856.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.25	2.77	9.13	3.62	5.73	6.27	7.97	5.19	9.24	6.53	8.54	6.58
Merged-chr8-39338096-2	chr8	39337991	39338191	+	684.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	L1_Mus3|LINE|L1	40111.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	5.65	7.8	11.41	5.23	4.91	8.47	7.31	7.29	0.0	0.5	0.0	0.94
Merged-chr9-103233206-2	chr9	103233110	103233310	+	684.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2924.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	6.06	0.75	0.0	3.22	5.73	3.45	1.33	6.0	14.95	14.06	20.6	7.52
Merged-chr4-48681129-3	chr4	48681044	48681244	+	684.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17630.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	9.69	7.8	5.7	3.22	9.82	6.59	3.65	7.15	14.95	13.05	10.05	4.7
Merged-chr17-81016024-2	chr17	81015946	81016146	+	684.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49039.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	3.23	8.05	0.0	5.63	5.32	5.33	4.98	6.81	10.23	9.54	12.06	6.27
Merged-chr8-105614079-3	chr8	105613978	105614178	+	684.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	CpG	-1388.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	8.08	2.52	1.71	14.48	6.95	10.35	5.65	11.89	11.41	12.05	16.08	10.02
Merged-chr9-69454115-3	chr9	69454018	69454218	+	684.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007585, intron 1 of 12)	CpG	435.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	7.67	10.06	3.99	6.84	9.82	6.27	5.65	7.21	10.23	11.05	14.57	3.45
Merged-chr16-30969436-3	chr16	30969359	30969559	+	684.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	111973.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.65	5.79	7.42	1.61	10.23	7.84	6.98	12.76	8.65	9.54	6.53	8.77
Merged-chrX-151062119-1	chrX	151062019	151062219	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008001, intron 1 of 17)	intron (NM_008001, intron 1 of 17)	14949.0	NM_008001	14163.0	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.81	5.53	2.28	2.41	7.77	5.64	5.98	6.34	3.54	10.04	13.06	5.95
Merged-chr4-139287647-1	chr4	139287547	139287747	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 7 of 9)	intron (NM_001037761, intron 7 of 9)	23061.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	13.33	2.77	2.85	4.02	11.45	7.53	5.31	5.41	13.37	9.04	10.55	4.7
Merged-chr5-67394129-1	chr5	67394029	67394229	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164806, exon 5 of 5)	3' UTR (NM_001164806, exon 5 of 5)	33670.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	2.42	0.75	0.0	1.21	3.27	5.02	9.3	5.05	5.7	4.52	9.04	6.27
Merged-chr1-86339625-1	chr1	86339525	86339725	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11660.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	3.23	5.03	6.28	4.02	8.59	6.9	4.32	5.86	10.42	9.54	7.54	2.82
Merged-chr17-24529274-1	chr17	24529174	24529374	+	684.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045289)	TTS (NR_045289)	1023.0	NR_045289	75614.0	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	6.86	4.02	6.85	0.8	0.0	7.84	3.99	2.24	8.65	4.52	8.04	4.7
Merged-chr6-125587277-1	chr6	125587177	125587377	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	34329.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.23	6.04	8.56	3.62	7.36	7.53	5.65	7.09	6.88	5.02	9.55	12.53
Merged-chr5-123068048-1	chr5	123067948	123068148	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8227.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	2.02	1.01	10.27	1.61	8.18	8.78	2.66	4.54	2.16	3.51	3.52	3.76
Merged-chrX-161537486-1	chrX	161537386	161537586	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-179550.0	NM_001103367	24004.0	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	5.25	2.01	15.97	6.44	17.18	7.21	4.98	6.62	6.29	5.52	9.55	4.07
Merged-chr3-146914996-1	chr3	146914896	146915096	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302957, intron 9 of 21)	intron (NM_001302957, intron 9 of 21)	62629.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	4.44	3.02	2.28	0.0	3.27	4.7	3.65	5.27	3.74	1.51	7.54	9.71
Merged-chr7-99947601-1	chr7	99947501	99947701	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	32857.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	5.65	2.01	1.71	2.41	2.45	8.15	4.65	5.83	2.95	6.53	1.0	6.58
Merged-chr13-110953468-2	chr13	110953362	110953562	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-49616.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	2.83	5.03	9.13	4.42	4.5	5.64	6.98	6.36	15.34	6.53	7.03	7.21
Merged-chr19-34386677-2	chr19	34386583	34386783	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88452.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	7.27	5.28	12.55	9.65	4.91	6.9	6.31	10.04	3.15	6.03	7.54	2.82
Merged-chr10-94190346-1	chr10	94190246	94190446	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011629, intron 11 of 13)	(TTTTTG)n|Simple_repeat|Simple_repeat	-8663.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	2.42	4.53	5.7	2.82	6.55	6.9	4.98	5.92	1.97	0.0	0.5	3.76
Merged-chr12-54874950-2	chr12	54874844	54875044	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12067.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	1.62	1.76	13.12	8.85	9.41	6.27	6.64	15.39	0.98	0.0	0.0	3.45
Merged-chr2-148575660-2	chr2	148575562	148575762	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96953.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.86	8.3	4.56	4.42	9.82	10.98	8.3	5.52	10.82	12.05	5.53	4.7
Merged-chr17-34960100-1	chr17	34960000	34960200	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-862.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	12.11	5.53	18.25	12.47	3.27	4.39	14.28	7.68	10.03	5.52	8.04	7.21
Merged-chr13-107885179-2	chr13	107885083	107885283	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	4881.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	10.9	3.77	9.7	7.64	4.91	5.64	5.98	10.12	5.31	6.53	10.55	4.07
Merged-chr10-94020774-1	chr10	94020674	94020874	+	684.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304720, intron 1 of 11)	intron (NM_001304720, intron 1 of 11)	14968.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0.0	2.52	2.28	0.8	1.64	5.02	2.33	3.64	14.36	4.02	14.57	5.01
Merged-chr14-27045236-3	chr14	27045127	27045327	+	684.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	6226.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	4.44	11.07	10.27	10.05	6.95	8.15	6.98	16.85	10.42	10.54	10.05	2.82
Merged-chr2-75781246-3	chr2	75781122	75781322	+	684.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-50955.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	7.67	4.28	11.41	6.03	6.55	12.23	3.99	8.38	9.05	18.58	12.06	11.28
Merged-chr15-78859904-3	chr15	78859790	78859990	+	684.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4361.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	10.9	7.29	9.13	9.65	15.96	7.21	5.98	9.45	7.08	6.03	17.59	8.14
Merged-chr11-22952877-2	chr11	22952783	22952983	+	684.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-19122.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	2.02	4.02	3.99	8.04	10.64	8.47	9.3	14.72	9.05	8.54	2.51	2.82
Merged-chr6-65143617-2	chr6	65143525	65143725	+	684.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1105.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	7.27	5.53	7.42	7.24	8.59	5.64	6.98	8.1	8.65	6.03	9.55	4.39
Merged-chr13-45883109-2	chr13	45882994	45883194	+	684.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	81897.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	7.67	0.5	10.84	3.22	10.64	7.84	5.98	4.65	6.88	1.0	4.52	2.19
Merged-chr1-52815848-2	chr1	52815752	52815952	+	684.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	1836.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	10.5	7.04	2.28	1.61	7.36	13.8	17.94	5.66	15.14	5.02	7.54	6.89
Merged-chr11-3998150-2	chr11	3998034	3998234	+	684.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177703, exon 3 of 3)	exon (NM_001177703, exon 3 of 3)	8201.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	14.13	7.55	2.85	5.23	7.36	6.9	13.29	13.96	7.47	6.53	14.07	7.21
Merged-chr10-96624660-3	chr10	96624550	96624750	+	684.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7649.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	9.69	14.09	3.42	0.8	5.73	14.42	3.99	1.21	8.85	10.54	1.51	4.07
Merged-chr1-134083115-2	chr1	134083017	134083217	+	684.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3962.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.4	1.76	0.57	2.01	8.18	6.59	14.62	8.8	7.47	2.01	9.55	3.45
Merged-chr9-103184039-2	chr9	103183938	103184138	+	684.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	18027.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	10.09	3.52	3.99	9.25	8.18	9.72	5.65	9.42	8.85	2.51	8.54	11.59
Merged-chr13-28606861-3	chr13	28606745	28606945	+	684.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	L1MB7|LINE|L1	104028.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	4.44	5.79	9.7	12.07	13.91	11.29	10.63	10.77	11.21	11.05	19.09	10.96
Merged-chr2-52471690-2	chr2	52471583	52471783	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 4 of 13)	intron (NM_001037099, intron 4 of 13)	-46809.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.23	3.02	6.28	2.41	5.73	5.96	8.3	6.93	9.05	7.03	15.58	6.27
Merged-chr10-61211904-2	chr10	61211803	61212003	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 14 of 21)	intron (NM_001081127, intron 14 of 21)	36641.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	4.04	6.04	4.56	7.64	4.5	7.53	3.65	6.39	12.39	8.03	11.56	6.58
Merged-chr7-19940013-2	chr7	19939903	19940103	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027308, intron 3 of 4)	RLTR26B_MM|LTR|ERVK	10740.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	7.27	2.52	7.42	10.05	10.64	4.08	3.65	7.37	8.46	7.53	13.06	4.07
Merged-chr10-8323388-2	chr10	8323290	8323490	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 3 of 7)	intron (NM_177387, intron 3 of 7)	195435.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.25	7.8	4.56	7.24	8.18	6.59	3.65	7.21	9.05	7.03	5.02	3.76
Merged-chr7-109479248-2	chr7	109479146	109479346	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170913, intron 7 of 19)	intron (NM_001170913, intron 7 of 19)	14492.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	4.85	11.82	10.27	9.65	7.77	5.33	2.66	8.21	3.34	7.53	17.08	4.07
Merged-chr19-32087844-2	chr19	32087727	32087927	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	15313.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	6.06	10.06	18.25	13.27	4.5	5.64	1.99	9.08	0.0	0.0	0.5	0.94
Merged-chr11-64517045-2	chr11	64516974	64517174	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-80400.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	6.86	8.05	10.84	7.64	3.27	0.63	1.33	4.85	10.62	11.55	2.01	6.89
Merged-chr19-28835086-1	chr19	28834986	28835186	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009199)	promoter-TSS (NM_009199)	-80.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	6.06	4.78	6.85	1.61	2.45	5.96	6.31	5.72	9.64	10.04	8.54	4.07
Merged-chr9-37177302-2	chr9	37177199	37177399	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29977.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	8.88	4.53	4.56	7.64	2.05	7.21	4.32	7.63	6.49	9.54	13.06	5.95
Merged-chr3-95673340-3	chr3	95673228	95673428	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14589.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	7.27	10.56	8.56	5.23	6.55	8.15	1.33	6.84	9.64	16.57	4.02	10.34
Merged-chr9-22129723-3	chr9	22129633	22129833	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102404, intron 2 of 4)	intron (NM_001102404, intron 2 of 4)	865.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	8.08	6.79	6.28	2.01	3.27	19.13	4.98	3.64	9.05	10.04	4.02	2.19
Merged-chr6-89628199-3	chr6	89628047	89628247	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15841.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	2.83	4.28	7.42	13.27	5.73	8.47	5.65	6.08	9.24	9.04	4.52	4.39
Merged-chr6-92067364-3	chr6	92067213	92067413	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172731, intron 14 of 20)	intron (NM_172731, intron 14 of 20)	-24105.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	9.69	5.03	8.56	5.63	3.68	9.41	4.65	7.12	10.23	8.03	12.06	6.27
Merged-chr10-18056133-2	chr10	18056053	18056253	+	684.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009048, intron 1 of 19)	CpG	213.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	6.86	10.82	8.56	7.24	6.95	5.64	11.63	8.55	9.83	15.57	6.53	8.14
Merged-chr16-23283196-2	chr16	23283087	23283287	+	684.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-7283.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.67	3.52	7.42	3.22	4.91	8.15	2.99	5.69	10.82	6.53	12.06	10.65
Merged-chr4-40147707-2	chr4	40147607	40147807	+	684.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	4442.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	6.46	3.52	6.85	8.04	11.05	4.39	6.31	4.82	12.39	8.54	9.04	8.14
Merged-chr16-33346677-3	chr16	33346504	33346704	+	684.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	34132.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	3.63	8.05	2.28	8.04	4.91	0.94	3.99	4.32	7.67	8.03	2.51	6.89
Merged-chr8-116636114-3	chr8	116636015	116636215	+	684.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	L1MC3|LINE|L1	96876.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	11.31	10.82	3.42	8.85	3.68	8.15	3.65	4.04	20.65	4.52	11.05	5.95
Merged-chr18-73762526-2	chr18	73762429	73762629	+	684.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8050.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	3.63	5.28	7.42	2.01	11.05	7.53	4.65	9.34	7.47	11.05	15.58	10.96
Merged-chr12-100732035-3	chr12	100731954	100732154	+	684.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6934.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	8.48	6.79	8.56	12.07	10.23	4.39	9.63	9.28	10.82	6.53	5.53	6.58
Merged-chr5-98348825-1	chr5	98348725	98348925	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 2 of 5)	intron (NM_001024614, intron 2 of 5)	19521.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	4.04	0.75	2.28	3.62	3.27	8.47	1.99	4.99	3.93	2.01	1.0	3.76
Merged-chr4-132621859-1	chr4	132621759	132621959	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-17187.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.85	5.28	3.42	2.82	11.45	10.35	1.99	3.2	5.51	2.01	9.55	6.27
Merged-chr2-103557458-2	chr2	103557357	103557557	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8853.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.65	2.77	10.27	1.61	1.23	6.59	3.99	10.96	9.44	7.03	10.05	6.27
Merged-chr1-13363827-1	chr1	13363727	13363927	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	8602.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.02	4.53	3.42	2.01	4.09	8.15	6.64	4.6	3.34	3.51	3.01	2.51
Merged-chr11-8561057-1	chr11	8560957	8561157	+	684.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	103478.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	3.77	0.0	0.0	4.09	0.0	0.0	0.95	10.23	4.02	10.55	2.51
Merged-chr4-56059535-1	chr4	56059435	56059635	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-527060.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.21	4.02	17.11	3.62	3.27	5.96	1.99	6.76	5.11	3.01	11.56	4.07
Merged-chr12-12274533-1	chr12	12274433	12274633	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	12394.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	11.31	9.81	5.7	0.0	5.32	7.21	3.99	4.6	12.39	4.52	4.02	3.13
Merged-chr16-35754124-2	chr16	35754007	35754207	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	15249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	2.42	3.77	0.0	2.82	3.27	7.84	4.98	8.61	8.06	7.53	12.56	4.39
Merged-chr19-6097995-2	chr19	6097882	6098082	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001362427, exon 6 of 6)	exon (NM_001362427, exon 6 of 6)	3563.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	6.46	16.6	5.13	8.45	7.36	21.64	3.32	4.21	18.29	11.55	8.54	5.33
Merged-chr5-44075648-2	chr5	44075564	44075764	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 1 of 22)	intron (NM_001163578, intron 1 of 22)	19104.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	8.88	8.05	10.27	13.27	4.91	0.94	0.66	2.02	9.05	6.53	9.55	8.14
Merged-chr14-70432527-1	chr14	70432427	70432627	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3433.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	2.42	5.28	9.13	5.63	1.64	2.2	5.31	6.25	3.15	3.51	4.52	2.51
Merged-chr7-132589752-1	chr7	132589652	132589852	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9885.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	7.27	4.02	3.99	4.02	6.95	3.14	3.32	5.69	6.69	4.52	5.02	1.88
Merged-chr1-153969357-1	chr1	153969257	153969457	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	69428.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.63	2.52	6.85	6.44	8.59	6.27	9.63	7.18	1.38	3.01	0.5	3.45
Merged-chr17-44239532-1	chr17	44239432	44239632	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172621, intron 2 of 5)	intron (NM_172621, intron 2 of 5)	50960.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	12.11	1.26	3.99	6.84	3.27	7.84	5.98	3.31	1.18	0.0	1.51	0.63
Merged-chr17-56754791-3	chr17	56754688	56754888	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008738, intron 1 of 2)	intron (NM_008738, intron 1 of 2)	2760.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	6.86	3.77	10.27	6.03	3.68	5.96	7.31	5.94	3.34	10.04	16.58	5.33
Merged-chr18-54832034-2	chr18	54831936	54832136	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	158144.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.23	3.02	6.85	6.03	8.59	7.21	4.98	6.73	6.69	9.04	7.54	10.34
Merged-chr8-104115065-1	chr8	104114965	104115165	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	MTE-int|LTR|ERVL-MaLR	-9192.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	2.52	1.14	6.03	0.82	0.63	5.31	8.47	5.7	2.51	6.03	2.82
Merged-chr4-99019700-1	chr4	99019600	99019800	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026082, intron 16 of 47)	intron (NM_026082, intron 16 of 47)	-11254.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	7.27	3.52	4.56	8.85	4.09	4.39	6.98	9.45	1.57	4.02	4.52	1.57
Merged-chr14-104029796-1	chr14	104029696	104029896	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2654.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.81	3.52	3.42	1.61	6.95	4.7	1.33	6.98	0.0	3.01	0.5	2.19
Merged-chr5-8807756-1	chr5	8807656	8807856	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011075, intron 4 of 27)	RLTR20B2|LTR|ERVK	-9233.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	4.53	3.42	0.0	6.55	7.84	3.65	7.29	2.16	0.0	1.0	3.45
Merged-chr10-62243072-1	chr10	62242972	62243172	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9366.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	1.62	7.29	6.85	0.8	3.68	4.7	5.31	6.2	3.93	3.51	6.03	5.95
Merged-chr5-122280322-1	chr5	122280222	122280422	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4076.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	4.44	3.27	5.7	8.04	7.36	7.53	1.0	5.36	4.52	6.03	3.52	3.76
Merged-chr5-30864045-1	chr5	30863945	30864145	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2238.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.81	2.52	3.99	2.01	3.27	5.02	3.99	7.12	0.79	4.02	0.0	2.82
Merged-chr3-144701951-1	chr3	144701851	144702051	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	18384.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.81	1.01	8.56	0.4	4.91	3.14	5.65	5.97	5.51	3.51	5.02	4.39
Merged-chr5-99217521-1	chr5	99217421	99217621	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	35406.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.29	7.55	0.0	1.61	4.09	10.35	1.33	4.57	3.54	5.52	7.54	4.39
Merged-chr2-13278277-1	chr2	13278177	13278377	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 66 of 66)	intron (NM_001081084, intron 66 of 66)	-6862.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.44	6.54	7.42	10.46	5.32	3.76	5.98	6.42	7.47	8.54	6.53	3.13
Merged-chr2-128414946-3	chr2	128414829	128415029	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	14422.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	7.67	4.28	6.85	4.83	9.82	7.21	7.64	10.71	11.01	7.53	10.05	10.65
Merged-chr17-30197779-1	chr17	30197679	30197879	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192740.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.63	0.5	1.14	7.64	5.73	3.45	2.33	6.81	4.33	1.0	2.01	1.25
Merged-chr2-73372184-1	chr2	73372084	73372284	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14296.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	2.42	3.02	3.42	0.0	6.95	7.21	10.96	5.66	3.74	1.0	4.02	2.19
Merged-chr9-66305414-3	chr9	66305328	66305528	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45022.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.44	8.05	3.42	8.85	2.86	5.96	3.99	8.3	9.24	5.52	6.03	6.58
Merged-chr10-128186131-3	chr10	128186019	128186219	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5822.0	NM_001039080	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	10.9	9.06	9.13	3.22	13.91	10.35	3.32	4.77	5.51	5.52	20.6	1.88
Merged-chr9-50452158-1	chr9	50452058	50452258	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42367.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	2.42	4.53	2.28	1.21	4.5	10.35	7.31	5.1	3.54	8.03	9.55	14.1
Merged-chr3-28103773-1	chr3	28103673	28103873	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	119602.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.23	5.03	5.13	4.83	6.95	1.57	1.99	7.82	4.92	6.03	8.54	5.95
Merged-chr1-45912929-1	chr1	45912829	45913029	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 5 of 7)	URR1A|DNA|hAT-Charlie	12665.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.04	6.54	6.28	4.42	10.23	2.51	5.31	7.49	7.47	3.01	7.54	3.76
Merged-chr11-120631677-1	chr11	120631577	120631777	+	684.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1870.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	5.65	4.28	6.85	4.02	6.95	5.96	1.99	3.9	12.19	9.54	9.04	4.39
Merged-chr16-55830927-1	chr16	55830827	55831027	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030612, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	7714.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.46	7.29	1.71	0.8	8.59	7.53	1.0	1.54	2.75	2.51	2.01	2.82
Merged-chr6-30176293-1	chr6	30176193	30176393	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038124)	promoter-TSS (NR_038124)	-330.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	2.83	5.03	1.14	1.61	1.64	5.33	3.65	1.65	1.38	3.01	3.01	1.88
Merged-chr11-106146499-2	chr11	106146394	106146594	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 8 of 15)	(T)n|Simple_repeat|Simple_repeat	13433.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	7.67	2.01	13.69	7.64	13.5	9.09	1.99	3.87	14.75	6.53	9.55	4.07
Merged-chr11-60937889-1	chr11	60937789	60937989	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	5832.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	7.67	12.32	10.27	5.23	4.09	3.14	0.66	1.91	3.54	3.01	5.02	1.25
Merged-chr12-17259585-1	chr12	17259485	17259685	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-7010.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	1.21	0.0	3.42	1.61	3.27	2.2	4.65	6.81	1.97	5.02	0.0	1.88
Merged-chr4-150048594-1	chr4	150048494	150048694	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19860.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	4.85	2.77	3.42	3.22	4.09	2.2	6.64	6.2	4.33	8.03	3.52	1.88
Merged-chr1-177338882-2	chr1	177338811	177339011	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90144.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	2.83	8.55	5.13	8.45	5.32	5.33	5.31	9.0	7.47	7.03	7.03	3.76
Merged-chr2-132602801-2	chr2	132602705	132602905	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4609.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	4.04	4.53	4.56	9.25	14.73	5.96	6.64	15.64	10.23	4.02	9.04	10.02
Merged-chrX-20425984-1	chrX	20425884	20426084	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_199317, intron 1 of 12)	CpG	296.0	NM_001289684	382207.0	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	3.23	10.06	11.98	14.88	6.55	5.33	7.64	6.81	3.15	4.52	5.53	3.13
Merged-chr6-38943239-1	chr6	38943139	38943339	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	24253.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.06	6.79	3.42	4.02	9.82	10.03	3.65	1.65	2.36	5.02	6.03	3.76
Merged-chr1-181077555-1	chr1	181077455	181077655	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26318.0	NM_001033819	619326.0	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.0	1.01	0.0	0.0	2.45	1.57	6.31	4.74	1.97	1.51	3.52	1.88
Merged-chr1-80636429-2	chr1	80636348	80636548	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28904.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	7.27	6.54	10.27	5.23	13.5	8.78	8.64	12.17	11.01	5.02	8.54	4.7
Merged-chr1-180881942-1	chr1	180881842	180882042	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11166.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	2.77	14.83	10.86	4.5	1.88	2.99	2.55	2.36	0.5	4.02	1.57
Merged-chrX-139685513-1	chrX	139685413	139685613	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081499, intron 1 of 20)	intron (NM_001081499, intron 1 of 20)	517.0	NM_001081499	245638.0	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	2.42	4.02	7.42	1.21	5.32	7.53	6.31	4.85	4.72	4.02	8.04	5.64
Merged-chr15-61986519-1	chr15	61986419	61986619	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177353, intron 1 of 2)	CpG	1178.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	10.9	5.28	5.13	11.66	10.64	8.15	8.64	8.5	11.01	6.03	10.05	18.48
Merged-chr11-29807574-3	chr11	29807488	29807688	+	683.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	18080.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.65	2.26	10.84	9.25	8.18	15.37	7.31	13.29	10.03	10.04	7.54	1.57
Merged-chr18-5986598-3	chr18	5986506	5986706	+	683.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	149492.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	9.69	6.54	13.69	1.61	10.23	20.07	4.98	12.0	2.36	11.55	17.59	6.58
Merged-chr16-44989257-3	chr16	44989159	44989359	+	683.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45581.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	11.31	5.79	11.98	2.01	11.05	7.84	10.63	13.88	2.95	9.04	11.56	9.08
Merged-chr1-191643127-3	chr1	191643028	191643228	+	683.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67492.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	8.08	8.05	10.84	17.7	8.59	10.66	5.98	7.51	10.42	5.02	9.04	2.19
Merged-chr19-9924734-2	chr19	9924620	9924820	+	683.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25187.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.86	2.52	3.42	7.24	7.77	7.21	8.64	11.47	7.67	7.53	12.06	9.08
Merged-chr8-95137908-2	chr8	95137808	95138008	+	683.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145831, intron 1 of 21)	intron (NM_001145831, intron 1 of 21)	4632.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	9.29	3.52	9.13	6.44	5.73	5.96	5.31	12.73	7.08	4.02	5.02	4.07
Merged-chr2-50670547-2	chr2	50670454	50670654	+	683.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-239130.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.23	3.02	8.56	5.23	7.77	13.17	5.65	6.53	8.06	3.01	9.55	5.95
Merged-chr9-100520748-2	chr9	100520631	100520831	+	683.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	-13875.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	6.46	5.79	2.28	7.24	2.86	2.2	2.66	5.16	16.52	13.56	10.05	6.27
Merged-chr9-65534724-2	chr9	65534598	65534798	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45389.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	13.73	8.05	7.42	2.01	7.36	12.54	2.33	3.17	11.6	5.52	10.55	7.83
Merged-chr8-34765884-2	chr8	34765785	34765985	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A1|LTR|ERV1	-41725.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.25	5.03	9.7	7.64	0.82	4.39	2.33	3.42	12.78	4.02	13.57	14.72
Merged-chr9-45547220-2	chr9	45547120	45547320	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-115988.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	10.5	3.52	7.99	5.63	0.82	4.39	2.33	2.64	5.9	10.04	10.05	12.84
Merged-chr11-64491240-2	chr11	64491142	64491342	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-54568.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	9.29	7.55	21.11	8.45	9.82	5.02	7.64	6.03	6.49	4.52	2.01	3.76
Merged-chrX-47992847-1	chrX	47992747	47992947	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42006.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	6.46	4.28	8.56	4.02	10.23	13.8	3.32	7.91	12.98	5.52	5.53	3.45
Merged-chr2-116065763-2	chr2	116065666	116065866	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159568)	promoter-TSS (NM_001159568)	-708.0	NM_010825	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	4.04	6.79	2.28	7.64	3.68	7.53	3.99	7.09	10.03	10.04	7.54	5.95
Merged-chr1-172000834-2	chr1	172000731	172000931	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033509)	TTS (NM_033509)	26464.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	9.29	5.03	7.99	6.44	8.59	5.64	1.0	6.14	10.23	12.05	9.04	8.46
Merged-chr8-117853641-2	chr8	117853549	117853749	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-51675.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	6.46	3.02	18.25	6.44	8.59	8.78	12.62	12.11	4.13	4.52	13.06	7.21
Merged-chr7-100731226-2	chr7	100731140	100731340	+	683.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	24605.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	6.46	3.52	11.98	8.85	6.55	1.88	6.64	8.55	2.16	4.02	6.03	7.21
Merged-chr5-72793857-2	chr5	72793757	72793957	+	683.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-41080.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	2.02	5.79	11.98	10.46	6.95	7.21	7.97	13.88	3.74	3.01	9.55	3.45
Merged-chr8-35429186-2	chr8	35429075	35429275	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53434.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.42	2.26	3.42	3.22	3.27	7.84	5.98	6.34	12.0	7.53	9.55	4.39
Merged-chr4-6514971-3	chr4	6514880	6515080	+	683.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60709.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	8.88	6.79	5.7	16.49	13.09	9.09	6.98	9.45	11.8	23.1	13.57	8.14
Merged-chr5-124351318-1	chr5	124351218	124351418	+	683.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	3310.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	3.63	6.29	6.28	1.61	11.86	7.53	3.32	6.03	3.15	8.54	4.52	3.45
Merged-chr2-173186520-2	chr2	173186394	173186594	+	683.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32428.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.23	2.77	0.57	2.41	2.05	6.59	7.64	5.33	7.47	4.02	10.55	5.33
Merged-chr17-66221417-3	chr17	66221304	66221504	+	683.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	97884.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	8.08	5.79	10.27	11.26	14.32	9.41	9.63	11.94	10.23	11.05	12.56	6.27
Merged-chr8-84871614-3	chr8	84871510	84871710	+	683.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-501.0	NR_031759	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	4.04	9.31	6.85	11.66	10.64	11.29	1.99	4.01	8.06	8.54	10.55	9.08
Merged-chr14-61698898-2	chr14	61698813	61699013	+	683.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16540.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.08	7.55	6.85	8.04	9.0	10.66	9.97	12.48	5.11	2.01	4.02	7.83
Merged-chr17-69223319-3	chr17	69223228	69223428	+	683.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53878.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	8.08	8.05	9.13	3.62	13.09	18.19	10.3	7.4	8.06	9.54	13.06	4.7
Merged-chr4-47050402-2	chr4	47050288	47050488	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024136, intron 1 of 14)	intron (NM_001024136, intron 1 of 14)	6918.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	2.42	3.27	7.42	3.62	4.5	3.14	5.31	4.99	10.82	6.53	4.52	6.89
Merged-chr15-13173180-2	chr15	13173063	13173263	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007666, intron 1 of 11)	CpG	512.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.42	8.55	8.56	5.63	1.23	9.41	3.32	5.33	2.56	7.53	5.02	4.07
Merged-chr12-35039249-1	chr12	35039149	35039349	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7940.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.65	9.56	7.42	10.86	2.05	8.47	5.31	1.37	5.31	5.52	7.54	8.14
Merged-chr15-68377930-2	chr15	68377829	68378029	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36640.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	6.06	6.54	2.28	21.32	2.86	2.82	4.65	5.13	10.42	7.03	11.56	4.7
Merged-chr18-49756396-2	chr18	49756305	49756505	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-804.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	13.73	3.52	7.99	7.64	6.14	4.39	13.29	3.11	13.18	8.54	11.56	5.95
Merged-chr2-4560711-2	chr2	4560591	4560791	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	937.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.83	7.55	6.28	4.83	3.27	7.21	0.66	4.85	11.01	5.02	12.06	18.17
Merged-chr19-17124579-2	chr19	17124495	17124695	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 8 of 19)	intron (NM_181348, intron 8 of 19)	168477.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	4.85	7.04	3.42	10.86	5.73	8.15	3.65	5.27	4.52	15.57	8.04	5.64
Merged-chr4-125059253-2	chr4	125059168	125059368	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175223, intron 4 of 5)	intron (NM_175223, intron 4 of 5)	6389.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	1.62	5.79	3.99	1.61	7.36	9.41	2.66	4.26	12.59	6.03	10.05	3.13
Merged-chr2-172399449-1	chr2	172399349	172399549	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5655.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	1.62	3.02	2.28	2.41	6.55	8.15	3.65	5.69	6.49	4.02	4.52	3.13
Merged-chr15-8722643-3	chr15	8722534	8722734	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11827.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	8.48	8.05	11.41	7.24	6.55	3.14	7.31	10.26	9.24	3.01	17.59	8.77
Merged-chr19-10692520-2	chr19	10692423	10692623	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3788.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	8.08	7.55	14.83	3.62	2.86	10.35	2.66	3.62	10.03	7.03	4.52	3.45
Merged-chr4-97754496-2	chr4	97754406	97754606	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-23120.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.27	4.28	7.99	9.25	5.73	8.15	7.31	11.1	9.64	4.52	13.06	6.58
Merged-chr2-119360025-2	chr2	119359936	119360136	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8794.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	11.31	10.31	9.13	7.64	7.77	6.27	4.65	10.43	9.05	12.55	10.05	3.13
Merged-chr2-127889613-2	chr2	127889496	127889696	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	34968.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	17.36	7.55	1.14	8.85	9.82	11.29	7.97	8.72	6.1	13.56	15.07	8.14
Merged-chr13-41597681-1	chr13	41597581	41597781	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-8535.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.23	1.51	0.57	6.03	8.59	1.25	5.31	6.0	6.29	2.51	8.54	4.39
Merged-chr4-41356953-2	chr4	41356851	41357051	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	B4|SINE|B4	4988.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.65	5.28	13.69	5.23	6.14	5.64	6.98	8.21	8.26	7.03	8.54	3.45
Merged-chr7-43351361-2	chr7	43351260	43351460	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271019)	promoter-TSS (NM_001271019)	19.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	9.69	5.79	3.42	8.85	6.55	9.72	4.32	7.54	6.1	9.54	7.54	6.58
Merged-chr7-122368089-1	chr7	122367989	122368189	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	MLT1O|LTR|ERVL-MaLR	78964.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.4	2.01	3.99	3.62	0.82	9.09	4.65	4.68	3.15	1.0	4.02	6.58
Merged-chr2-58907339-2	chr2	58907268	58907468	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	152184.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	7.27	5.79	2.28	2.82	7.77	5.96	7.97	11.94	10.23	6.53	8.04	5.95
Merged-chr3-50444329-1	chr3	50444229	50444429	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-716.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	1.62	3.27	2.28	0.8	6.55	7.53	3.65	5.05	2.36	5.52	3.01	3.45
Merged-chr2-77287027-1	chr2	77286927	77287127	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6435.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	1.21	0.5	4.56	1.21	1.23	3.14	2.66	5.27	4.13	2.01	4.02	2.82
Merged-chr8-119836885-4	chr8	119836786	119836986	+	683.479187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	3693.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	8.48	4.78	7.42	14.08	3.27	10.66	6.31	6.98	9.83	12.05	11.05	9.71
Merged-chr10-80538330-1	chr10	80538230	80538430	+	683.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026094, intron 1 of 27)	intron (NM_026094, intron 1 of 27)	794.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	5.25	10.82	1.14	2.01	4.09	11.29	1.99	3.56	14.75	10.54	10.05	5.64
Merged-chr3-59225552-2	chr3	59225461	59225661	+	683.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14679.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	8.08	5.79	2.28	8.45	6.14	13.48	7.97	10.23	7.87	2.51	4.52	4.7
Merged-chr7-80084605-2	chr7	80084446	80084646	+	683.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175433, intron 2 of 4)	intron (NM_175433, intron 2 of 4)	-9289.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.85	4.78	2.85	4.42	6.14	10.98	4.65	6.73	3.15	8.03	4.02	3.45
Merged-chr5-8164948-2	chr5	8164844	8165044	+	683.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 5 of 28)	intron (NM_001007220, intron 5 of 28)	108402.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	11.31	3.52	18.83	6.03	9.41	10.66	1.99	8.38	7.47	2.51	8.04	2.51
Merged-chr10-61536576-2	chr10	61536475	61536675	+	683.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153542, intron 3 of 4)	intron (NM_153542, intron 3 of 4)	-58909.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	4.04	6.29	3.99	0.8	5.32	6.9	6.31	7.43	10.23	4.02	20.1	8.14
Merged-chr7-114305629-2	chr7	114305526	114305726	+	683.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29510.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.65	2.77	2.28	12.87	4.09	8.78	9.3	4.79	8.65	1.0	10.55	3.45
Merged-chr14-47335037-1	chr14	47334937	47335137	+	683.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36763.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	7.27	5.53	3.42	6.44	8.18	10.03	3.32	6.5	8.46	6.53	10.05	7.83
Merged-chr12-102438700-3	chr12	102438610	102438810	+	683.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1103.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.65	3.02	13.12	7.64	6.14	10.98	11.29	6.0	16.13	9.54	26.13	4.7
Merged-chr3-8987232-1	chr3	8987132	8987332	+	683.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MER57-int|LTR|ERV1	16972.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.42	3.02	5.13	2.41	5.73	5.96	2.66	2.72	18.1	14.06	10.55	7.21
Merged-chr14-27497852-3	chr14	27497760	27497960	+	683.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177111, intron 6 of 17)	MIR|SINE|MIR	10600.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	12.11	9.31	5.13	2.01	2.45	5.96	2.33	7.77	6.29	3.01	7.03	3.13
Merged-chr9-119067808-1	chr9	119067708	119067908	+	683.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011700, intron 15 of 18)	intron (NM_011700, intron 15 of 18)	15030.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	5.25	9.31	5.7	0.8	3.27	6.59	4.65	5.66	6.1	4.52	4.52	4.39
Merged-chr15-78246831-3	chr15	78246727	78246927	+	683.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	2016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	9.29	7.04	3.99	2.01	8.59	9.72	15.28	4.74	8.46	1.0	9.55	8.77
Merged-chr8-46628872-3	chr8	46628778	46628978	+	683.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	11587.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	7.27	6.54	4.56	13.27	18.41	14.74	10.3	17.89	9.24	13.56	9.04	8.77
Merged-chr11-22930272-2	chr11	22930160	22930360	+	683.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361661, intron 2 of 2)	ORR1B1|LTR|ERVL-MaLR	-41745.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	6.86	5.53	11.98	9.25	8.59	4.7	5.31	9.39	7.08	5.02	6.53	4.07
Merged-chrX-103634084-3	chrX	103633972	103634172	+	683.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	3486.0	NM_029158	75064.0	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	9.29	2.77	9.13	6.03	12.27	6.9	10.63	7.49	9.05	10.04	12.56	9.08
Merged-chr13-13517019-2	chr13	13516914	13517114	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73395.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	9.69	2.77	2.85	6.03	7.77	4.39	2.99	6.31	3.74	16.57	10.05	5.33
Merged-chr13-78201738-2	chr13	78201637	78201837	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-2864.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	13.33	1.26	2.85	8.04	5.32	4.7	5.98	7.91	5.31	8.03	13.06	6.27
Merged-chr18-12644344-2	chr18	12644238	12644438	+	683.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	CpG	805.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	6.86	3.77	4.56	3.22	3.68	5.96	7.97	6.34	10.62	7.53	6.53	9.71
Merged-chr15-78447829-2	chr15	78447717	78447917	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19253.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	8.48	5.28	12.55	4.02	11.45	12.54	2.66	6.08	14.16	4.52	9.04	1.25
Merged-chr2-153529356-5	chr2	153529251	153529451	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	CpG	620.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.25	9.31	9.7	10.86	1.23	2.2	6.98	3.11	7.08	6.03	6.03	11.28
Merged-chr15-86278701-2	chr15	86278593	86278793	+	683.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	1018.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.4	0.5	0.0	0.4	9.41	9.72	7.64	13.51	7.67	10.04	6.03	3.76
Merged-chr17-31018460-3	chr17	31018361	31018561	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39233.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.67	7.8	23.39	6.03	7.36	13.17	7.64	6.9	10.42	6.03	14.07	5.01
Merged-chr6-39778093-1	chr6	39777993	39778193	+	683.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32843.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	3.23	5.53	7.99	5.63	6.55	6.9	7.31	6.79	4.72	2.01	4.02	3.76
Merged-chr10-127310089-3	chr10	127309980	127310180	+	683.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001171582, exon 4 of 22)	exon (NM_001171582, exon 4 of 22)	1706.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	10.09	8.3	13.69	7.24	8.59	8.47	3.32	6.9	11.01	9.04	8.54	10.96
Merged-chr6-134614918-3	chr6	134614814	134615014	+	683.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17574.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	13.73	7.55	7.42	7.64	12.68	8.47	6.31	9.25	7.67	4.02	11.05	4.07
Merged-chr1-155210634-3	chr1	155210547	155210747	+	683.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51944.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	18.57	5.53	11.98	17.29	7.36	9.41	4.65	9.11	7.67	3.51	10.55	7.83
Merged-chr19-7064765-3	chr19	7064649	7064849	+	683.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	7981.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	6.06	13.58	6.85	4.83	9.82	11.92	8.3	5.1	12.19	8.54	14.07	9.08
Merged-chr1-174434338-2	chr1	174434231	174434431	+	683.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR22_Mur|LTR|ERVK	3901.0	NM_146761	258756.0	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	11.71	5.79	13.69	21.72	5.32	6.9	4.98	11.36	4.52	6.53	10.05	3.13
Merged-chr8-56064320-2	chr8	56064208	56064408	+	683.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	123483.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	6.46	3.27	3.99	6.44	9.0	4.08	5.31	7.09	7.87	10.04	7.54	2.51
Merged-chr18-20651237-2	chr18	20651133	20651333	+	683.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-14017.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	5.65	5.28	3.99	4.02	1.64	17.56	7.64	7.32	8.06	7.53	6.03	8.14
Merged-chr18-53144960-2	chr18	53144844	53145044	+	683.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-31348.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	12.11	5.03	18.83	7.64	5.73	2.2	1.33	3.11	11.6	15.06	17.59	8.14
Merged-chr5-23493423-3	chr5	23493326	23493526	+	683.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026984, exon 16 of 26)	exon (NM_026984, exon 16 of 26)	58997.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	11.31	8.05	9.13	14.48	2.45	5.96	2.99	15.95	15.54	8.03	6.53	8.46
Merged-chr11-93987245-2	chr11	93987118	93987318	+	683.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8873.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	8.48	6.04	2.85	6.44	1.64	2.2	1.99	4.01	16.92	13.05	14.57	10.02
Merged-chr19-38799459-3	chr19	38799377	38799577	+	683.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021315, intron 11 of 20)	RLTR17B_Mm|LTR|ERVK	19760.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	8.08	7.04	1.14	4.02	2.86	9.41	7.31	5.02	12.39	13.05	1.0	6.27
Merged-chr2-32428684-3	chr2	32428590	32428790	+	683.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	2461.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	4.44	7.04	10.27	4.42	9.41	13.8	6.64	8.47	10.03	7.53	10.55	8.77
Merged-chr5-150259384-2	chr5	150259293	150259493	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172887)	promoter-TSS (NM_172887)	-537.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	6.46	1.26	0.0	1.61	3.68	6.27	4.65	4.12	4.92	14.06	17.08	7.83
Merged-chr4-150901857-1	chr4	150901757	150901957	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020569, intron 5 of 6)	intron (NM_020569, intron 5 of 6)	8064.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	9.69	8.8	6.85	0.8	2.05	11.92	3.65	2.36	4.33	10.04	3.52	7.83
Merged-chr13-62757117-2	chr13	62756978	62757178	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3661.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	5.65	5.28	2.85	5.63	2.05	3.14	9.3	1.88	10.62	13.05	8.04	12.53
Merged-chr18-25505261-1	chr18	25505161	25505361	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362304, intron 3 of 12)	intron (NM_001362304, intron 3 of 12)	174487.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.62	0.75	0.0	5.63	2.45	4.08	6.64	6.17	8.26	1.51	3.52	6.27
Merged-chr8-109853642-2	chr8	109853545	109853745	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009677, exon 18 of 24)	exon (NM_009677, exon 18 of 24)	14333.0	NR_028532	100217432.0		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	9.69	3.02	3.42	10.86	4.91	7.21	5.31	7.43	3.93	5.02	8.04	5.01
Merged-chr18-31802863-1	chr18	31802763	31802963	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1194.0	NM_028866	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	7.27	3.52	2.85	6.44	4.5	7.84	3.32	5.07	1.38	5.52	6.53	3.13
Merged-chr10-58341874-1	chr10	58341774	58341974	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-10089.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.25	3.52	10.27	6.84	9.41	7.84	5.98	4.99	15.93	5.02	6.03	4.07
Merged-chr8-111157776-1	chr8	111157676	111157876	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009149, exon 26 of 26)	3' UTR (NM_009149, exon 26 of 26)	-12278.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	2.02	4.78	1.14	4.83	7.77	0.63	2.99	5.13	4.72	5.02	7.54	6.27
Merged-chr5-122343112-1	chr5	122343012	122343212	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	11083.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	3.23	1.51	3.42	0.8	6.95	6.27	2.99	7.91	4.72	1.0	2.51	4.39
Merged-chr2-169874124-1	chr2	169874024	169874224	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89063.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	4.85	2.52	0.0	2.01	1.64	1.57	5.65	5.1	2.16	0.5	1.0	3.45
Merged-chr6-120472874-1	chr6	120472774	120472974	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008359, intron 2 of 12)	intron (NM_008359, intron 2 of 12)	9677.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.81	2.01	0.0	2.01	5.73	1.88	2.66	1.54	0.39	6.53	0.0	1.25
Merged-chr11-116623303-2	chr11	116623200	116623400	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	952.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.25	7.04	6.85	4.83	9.41	9.09	7.64	4.35	12.59	6.53	10.55	11.28
Merged-chr6-38434516-1	chr6	38434416	38434616	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177185, exon 1 of 17)	exon (NM_177185, exon 1 of 17)	591.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	7.67	12.58	10.84	10.05	7.77	11.6	9.63	4.93	10.82	9.54	8.54	9.4
Merged-chr1-191445630-1	chr1	191445530	191445730	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151615, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	19418.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	4.04	5.03	5.7	1.61	10.23	18.19	7.97	3.84	2.36	3.01	4.52	4.39
Merged-chr13-47287883-1	chr13	47287783	47287983	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93880.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.21	1.51	4.56	6.44	11.05	7.21	1.0	6.67	2.95	1.0	1.51	1.57
Merged-chr16-58453935-1	chr16	58453835	58454035	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356484, intron 9 of 15)	ID_B1|SINE|B4	45400.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	2.01	0.0	0.4	0.0	3.14	5.98	6.17	0.0	0.0	3.52	4.7
Merged-chr14-13901853-3	chr14	13901760	13901960	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59453.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	7.67	5.53	9.13	8.85	5.32	10.66	15.61	14.16	6.69	9.54	11.05	9.4
Merged-chr17-86168805-1	chr17	86168705	86168905	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011104, exon 1 of 15)	exon (NM_011104, exon 1 of 15)	1020.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	6.06	2.26	5.13	4.42	6.14	5.02	4.65	6.93	4.33	3.51	7.03	4.39
Merged-chr13-77045505-1	chr13	77045405	77045605	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	89963.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	7.27	3.52	1.14	7.64	8.18	14.42	4.65	7.54	6.1	1.0	4.02	0.63
Merged-chr13-91543137-1	chr13	91543037	91543237	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 3 of 15)	intron (NM_001360776, intron 3 of 15)	82040.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	2.42	1.51	8.56	6.44	3.27	6.59	3.99	5.64	5.31	2.51	6.03	2.82
Merged-chr18-11695619-1	chr18	11695519	11695719	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081223, intron 5 of 18)	Lx7|LINE|L1	38270.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.86	6.54	3.42	8.04	6.55	4.7	4.32	7.35	8.46	6.03	7.54	3.45
Merged-chr3-101800478-1	chr3	101800378	101800578	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35745.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	6.06	4.28	7.99	4.42	11.86	6.27	8.97	4.04	5.11	1.51	8.04	3.76
Merged-chr11-97433313-1	chr11	97433213	97433413	+	683.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16847.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	8.08	2.01	2.28	3.62	6.95	3.76	5.65	3.73	9.44	8.54	13.06	5.64
Merged-chr7-87938526-1	chr7	87938426	87938626	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	-339559.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	1.62	0.0	3.42	7.24	1.64	2.2	6.64	8.52	3.15	0.0	5.53	0.0
Merged-chr6-66890903-1	chr6	66890803	66891003	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5494.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	1.21	2.01	1.14	0.0	4.09	1.57	3.65	0.9	3.93	3.51	2.51	1.88
Merged-chr16-62782399-2	chr16	62782284	62782484	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	4332.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	10.5	7.29	3.42	10.86	3.27	12.54	6.31	6.03	5.31	10.54	6.53	5.01
Merged-chr4-58466766-2	chr4	58466600	58466800	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-25602.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	4.44	4.02	2.85	0.0	2.05	0.31	4.65	0.22	6.29	5.52	15.58	1.57
Merged-chr2-164372840-1	chr2	164372740	164372940	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16333.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	2.02	3.52	1.14	4.83	8.18	7.53	7.97	6.62	5.31	3.01	3.01	3.76
Merged-chr7-88047535-1	chr7	88047435	88047635	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-230550.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.04	0.5	3.42	4.83	2.45	3.76	6.64	4.93	5.31	4.52	6.53	4.07
Merged-chr7-7280121-1	chr7	7280021	7280221	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	0.4	0.0	4.56	0.0	7.36	0.0	3.32	6.0	5.51	0.0	5.02	2.82
Merged-chr11-22987436-1	chr11	22987336	22987536	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3157.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	8.88	10.56	5.13	7.24	5.73	6.9	3.99	2.72	6.49	2.01	2.51	5.95
Merged-chr2-117303558-2	chr2	117303445	117303645	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	39332.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	2.83	9.06	2.28	3.22	8.18	4.08	2.99	4.96	15.14	7.53	12.56	3.76
Merged-chr6-143073549-1	chr6	143073449	143073649	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	26603.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.81	3.52	1.71	8.04	4.91	2.82	4.32	7.04	3.74	7.03	3.01	6.27
Merged-chr2-124623036-1	chr2	124622936	124623136	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	12740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	1.62	1.51	3.42	2.82	4.09	7.53	0.66	5.19	6.29	9.54	1.0	2.51
Merged-chr18-23898405-1	chr18	23898305	23898505	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56283.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.04	1.76	0.0	2.41	7.36	2.2	5.98	6.25	5.51	5.52	4.02	2.19
Merged-chr5-21130536-1	chr5	21130436	21130636	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-45743.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	1.62	1.01	3.42	2.41	4.91	8.47	1.66	6.08	3.93	1.51	6.03	6.58
Merged-chr17-83764733-1	chr17	83764633	83764833	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054082, intron 7 of 16)	intron (NM_054082, intron 7 of 16)	58570.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.44	3.02	1.71	6.44	6.55	0.63	3.99	5.41	3.15	0.0	7.54	5.64
Merged-chr1-24688366-1	chr1	24688266	24688466	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 2 of 15)	ORR1A2-int|LTR|ERVL-MaLR	9448.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	2.42	1.76	1.14	0.8	0.0	5.33	4.98	7.57	5.31	1.51	4.02	7.21
Merged-chr6-97508735-1	chr6	97508635	97508835	+	683.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20915.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.48	11.07	2.28	1.61	2.45	4.08	5.31	0.14	18.29	7.03	13.06	4.39
Merged-chr17-31344404-1	chr17	31344304	31344504	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242427, intron 17 of 19)	intron (NM_001242427, intron 17 of 19)	-41830.0	NM_008804	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	4.44	5.53	6.85	6.03	3.68	5.96	2.99	5.5	5.31	5.02	2.51	5.95
Merged-chr6-37355590-1	chr6	37355490	37355690	+	683.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 6 of 11)	intron (NM_178661, intron 6 of 11)	-55614.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	4.04	4.53	7.99	7.24	4.91	3.76	3.99	3.84	5.7	5.52	12.06	8.77
Merged-chr11-82007908-3	chr11	82007772	82007972	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17D|LTR|ERVK	-27705.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	8.48	5.53	10.27	8.45	5.73	4.08	7.64	7.07	7.28	4.52	5.02	7.52
Merged-chr3-122312255-1	chr3	122312155	122312355	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18552.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	8.48	3.52	11.41	6.44	2.45	3.14	8.64	8.83	8.06	16.07	10.55	7.52
Merged-chr18-5054304-1	chr18	5054204	5054404	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153153, intron 4 of 34)	intron (NM_153153, intron 4 of 34)	7715.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	1.21	1.01	1.14	0.0	7.77	2.51	3.99	4.79	2.95	2.01	5.02	3.76
Merged-chr3-89997866-1	chr3	89997766	89997966	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_045749)	promoter-TSS (NR_045749)	237.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	3.63	9.81	9.13	4.42	4.91	6.9	2.99	2.27	9.44	2.01	4.52	2.82
Merged-chr5-143817202-2	chr5	143817096	143817296	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-54666.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	6.46	4.53	4.56	4.02	1.64	5.02	4.65	4.85	10.62	8.03	7.54	7.83
Merged-chr9-13622485-1	chr9	13622385	13622585	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	2496.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.81	0.75	6.85	3.22	0.0	5.64	7.64	6.39	1.57	0.5	2.01	1.88
Merged-chr3-59059338-1	chr3	59059238	59059438	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	42483.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	9.69	7.29	1.14	4.42	5.73	5.02	3.65	3.64	1.38	1.51	2.51	1.88
Merged-chr4-54526291-1	chr4	54526191	54526391	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-421654.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.4	1.01	0.57	0.8	2.05	0.94	6.98	0.53	0.2	0.0	0.0	3.76
Merged-chr1-38989316-1	chr1	38989216	38989416	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026850, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1502.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	7.27	2.77	11.41	2.01	6.95	5.64	4.65	7.07	0.79	5.02	2.51	2.82
Merged-chr1-58696235-2	chr1	58696133	58696333	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175370)	promoter-TSS (NM_175370)	-244.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	6.46	5.28	11.41	0.0	4.09	4.7	3.65	8.38	13.96	6.53	12.06	6.58
Merged-chr11-8497283-3	chr11	8497194	8497394	+	682.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	167241.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.48	7.8	36.51	8.85	8.59	8.78	12.95	21.39	8.46	10.04	12.56	5.01
Merged-chr8-43416051-2	chr8	43415928	43416128	+	682.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109019.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.23	1.01	1.14	0.8	13.5	5.33	11.29	6.81	6.69	6.53	8.04	10.96
Merged-chr10-57721233-2	chr10	57721153	57721353	+	682.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63670.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	11.31	5.28	8.56	6.84	6.95	10.03	9.97	8.69	9.83	8.03	14.57	6.27
Merged-chr12-33146094-2	chr12	33145997	33146197	+	682.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 1 of 5)	intron (NR_015602, intron 1 of 5)	1489.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	4.85	9.56	3.99	6.03	9.0	5.64	3.99	7.23	11.41	18.58	16.58	10.65
Merged-chr8-110231961-2	chr8	110231859	110232059	+	682.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13999.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0.4	3.02	6.85	0.8	3.27	13.48	6.98	4.79	15.93	12.55	21.61	8.14
Merged-chr10-118737268-2	chr10	118737158	118737358	+	682.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131645.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	1.21	3.02	6.28	5.63	8.59	6.27	1.99	8.83	14.75	12.55	9.55	8.14
Merged-chr15-102100367-2	chr15	102100276	102100476	+	682.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2558.0	NM_001355636	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	10.09	2.77	3.99	6.44	5.73	7.84	4.32	7.18	6.69	7.53	8.04	5.33
Merged-chr14-51855474-2	chr14	51855376	51855576	+	682.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053111)	TTS (NM_053111)	1478.0	NM_017385	53873.0	Mm.221324	NM_017385		Ear7	mR7	eosinophil-associated, ribonuclease A family, member 7	protein-coding	3.63	6.04	14.83	7.64	6.55	4.7	4.65	6.7	17.7	16.57	21.61	10.65
Merged-chr14-65336987-2	chr14	65336895	65337095	+	682.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21681.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	18.98	6.54	7.42	4.83	2.86	9.09	10.63	5.55	15.54	6.53	11.56	2.19
Merged-chr10-94569115-3	chr10	94568995	94569195	+	682.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6162.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.08	6.79	6.28	5.23	9.0	13.48	2.99	6.48	7.67	5.52	8.04	6.89
Merged-chr3-157764010-3	chr3	157763914	157764114	+	682.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161049.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	9.69	13.33	10.84	12.47	13.09	4.39	8.3	13.77	6.29	5.02	10.05	6.58
Merged-chr17-84837973-3	chr17	84837850	84838050	+	682.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47164.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	8.48	5.53	13.69	17.29	6.95	5.96	4.65	9.67	9.24	10.54	12.56	4.39
Merged-chr17-70979797-2	chr17	70979663	70979863	+	682.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	10753.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.44	7.29	9.13	6.03	4.91	7.21	4.32	4.23	9.83	11.55	7.03	13.47
Merged-chr8-125061127-1	chr8	125061027	125061227	+	682.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	RLTR40|LTR|ERVK	6932.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.81	1.01	0.57	0.0	1.23	0.0	0.66	2.38	9.64	13.05	16.08	10.02
Merged-chr10-10466697-1	chr10	10466597	10466797	+	682.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	LTR101_Mam|LTR|ERVL	5617.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.02	0.75	1.71	0.8	0.0	0.63	0.66	1.74	12.78	12.05	12.56	11.59
Merged-chr7-4524433-3	chr7	4524333	4524533	+	682.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033548, intron 9 of 11)	B3A|SINE|B2	-1905.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	13.73	4.53	10.84	3.62	6.14	12.23	4.65	4.54	13.96	11.05	11.05	14.1
Merged-chr4-58506152-3	chr4	58506044	58506244	+	682.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	PB1D11|SINE|Alu	-6741.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.65	7.29	15.97	8.45	3.27	4.39	3.32	7.79	22.82	7.53	14.07	9.08
Merged-chr7-102230202-2	chr7	102230119	102230319	+	682.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	7191.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	9.29	5.03	3.99	9.65	11.86	13.17	2.99	5.24	7.67	3.51	4.02	5.95
Merged-chr13-99175372-2	chr13	99175248	99175448	+	682.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9475.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	8.48	8.3	3.99	8.45	5.73	5.02	6.31	10.77	5.31	4.02	4.52	10.34
Merged-chr8-10831438-2	chr8	10831351	10831551	+	682.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	51003.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	14.13	4.53	12.55	4.42	10.64	2.82	5.65	8.47	6.29	5.52	3.52	1.25
Merged-chr19-11093528-2	chr19	11093410	11093610	+	682.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12407.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	9.29	4.78	6.85	5.23	4.91	9.72	11.96	6.08	5.9	11.55	13.06	3.13
Merged-chr16-3236076-2	chr16	3235966	3236166	+	682.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-356332.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	10.09	11.32	5.7	12.87	2.05	5.33	10.63	6.93	4.13	6.53	3.52	7.83
Merged-chr4-137609875-2	chr4	137609772	137609972	+	682.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 6 of 26)	(TG)n|Simple_repeat|Simple_repeat	15700.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.4	0.75	5.7	0.0	5.73	0.63	4.98	3.76	17.31	9.54	17.59	12.22
Merged-chr5-112993462-2	chr5	112993362	112993562	+	682.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	22076.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	13.33	11.32	10.84	6.84	2.86	8.15	2.99	3.56	8.46	3.51	12.06	5.95
Merged-chr13-73417945-2	chr13	73417841	73418041	+	682.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49442.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	7.27	6.29	6.28	4.02	9.41	7.21	1.33	7.51	5.11	4.52	9.04	2.82
Merged-chr11-82038956-6	chr11	82038750	82038950	+	682.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3273.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	9.69	6.79	8.56	8.04	8.18	7.21	1.0	3.22	2.95	3.51	8.04	2.82
Merged-chr2-52605558-1	chr2	52605458	52605658	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-46947.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	6.46	3.52	1.14	2.82	3.27	4.39	6.31	6.2	7.47	7.53	9.55	3.13
Merged-chr17-18968549-2	chr17	18968462	18968662	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	54240.0	NM_001104549	627367.0	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	0.81	0.5	2.28	4.83	2.45	1.25	5.98	4.51	11.21	14.06	14.57	5.01
Merged-chr9-113782375-2	chr9	113782282	113782482	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-10948.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	1.62	3.02	6.28	4.42	6.14	5.96	1.66	4.77	7.08	1.0	10.55	0.31
Merged-chr6-119483112-2	chr6	119483011	119483211	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	3443.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	4.44	10.31	4.56	17.7	4.5	3.45	4.65	5.89	4.72	6.03	8.04	2.82
Merged-chr5-34533200-3	chr5	34533110	34533310	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	7426.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	10.9	6.29	4.56	8.85	8.59	8.47	6.98	4.68	9.83	5.52	14.07	5.33
Merged-chr11-103172299-2	chr11	103172206	103172406	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	1168.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	4.44	11.82	7.99	4.83	3.68	12.86	0.33	5.55	8.85	6.53	11.05	5.95
Merged-chr1-170844662-1	chr1	170844562	170844762	+	682.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 4 of 15)	L1MC4|LINE|L1	23109.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	1.26	0.0	0.0	4.91	3.45	1.99	4.29	8.65	7.53	3.52	5.95
Merged-chr10-80587626-2	chr10	80587538	80587738	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145421, intron 1 of 4)	intron (NM_145421, intron 1 of 4)	2703.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	7.27	5.79	11.41	7.64	9.0	6.27	2.99	7.01	3.34	1.0	2.01	2.82
Merged-chr6-129499984-2	chr6	129499880	129500080	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138648, exon 3 of 8)	exon (NM_138648, exon 3 of 8)	7185.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	6.86	4.78	8.56	6.03	6.14	9.41	5.31	6.25	1.57	4.02	3.01	1.25
Merged-chr8-91019980-2	chr8	91019877	91020077	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 25 of 39)	intron (NM_177224, intron 25 of 39)	-50080.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.65	6.29	2.28	4.83	3.68	12.54	3.99	6.08	10.23	2.01	4.52	4.7
Merged-chr13-107788773-1	chr13	107788673	107788873	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	101291.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	5.65	7.04	7.42	5.23	7.77	1.25	4.98	6.7	3.93	3.01	8.04	5.01
Merged-chr10-20882819-2	chr10	20882719	20882919	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69728.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	5.65	6.04	9.7	4.83	8.59	6.59	10.96	8.94	10.42	11.55	12.06	5.33
Merged-chr1-182376362-1	chr1	182376262	182376462	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32805.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	9.69	5.79	6.28	3.62	5.32	3.45	5.65	5.86	3.54	2.01	11.05	2.82
Merged-chr11-54733675-1	chr11	54733575	54733775	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	54028.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.04	6.79	3.99	1.61	6.55	5.33	4.32	6.81	3.34	2.01	1.51	4.07
Merged-chr6-98499927-3	chr6	98499824	98500024	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157170.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	10.5	2.26	12.55	5.63	8.18	2.51	6.98	17.64	2.56	9.04	11.56	3.13
Merged-chr5-43849458-1	chr5	43849358	43849558	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-19351.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.21	1.01	1.71	1.61	7.77	3.14	8.97	4.04	2.36	0.5	2.51	2.51
Merged-chr5-73133968-2	chr5	73133851	73134051	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028194, intron 5 of 62)	intron (NM_028194, intron 5 of 62)	122667.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	2.83	7.8	2.28	6.44	5.32	4.39	1.99	6.79	1.97	3.51	1.51	0.0
Merged-chr13-91132971-1	chr13	91132871	91133071	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	91016.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	1.62	4.02	5.13	3.22	11.45	3.14	4.65	5.5	0.98	4.02	4.52	3.13
Merged-chr8-126643753-1	chr8	126643653	126643853	+	682.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-50317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.46	2.26	9.13	4.83	4.09	2.82	0.0	4.18	12.0	4.02	12.06	6.58
Merged-chr17-64771547-1	chr17	64771447	64771647	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4436.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	1.21	4.28	2.85	4.83	6.14	2.2	11.63	3.98	2.75	2.51	8.54	4.7
Merged-chr17-21272314-1	chr17	21272214	21272414	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11887.0	NM_134199	171233.0	Mm.222636	NM_134199	ENSMUSG00000050102	Vmn1r235	V1rf2	vomeronasal 1 receptor 235	protein-coding	5.65	7.29	1.71	4.02	6.14	7.53	3.32	4.63	4.92	0.0	3.01	3.13
Merged-chr3-89322979-2	chr3	89322880	89323080	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010108)	promoter-TSS (NM_010108)	-101.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	6.46	1.51	11.98	0.0	10.23	6.59	0.66	8.83	13.37	9.54	10.55	3.76
Merged-chr1-92775545-1	chr1	92775445	92775645	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56100.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	2.42	3.02	1.14	4.83	1.23	5.96	7.97	5.69	2.16	0.5	6.03	5.95
Merged-chr11-26127660-1	chr11	26127560	26127760	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	L2a|LINE|L2	-74580.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.81	0.5	0.57	3.22	8.18	5.64	3.32	4.88	3.34	4.02	3.52	2.82
Merged-chr8-111626077-3	chr8	111625975	111626175	+	682.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168623)	TTS (NM_001168623)	4247.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	8.08	7.29	14.26	8.85	7.36	7.21	5.98	9.7	8.85	11.05	9.04	7.83
Merged-chr10-39436290-3	chr10	39436196	39436396	+	682.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	66497.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	12.52	5.53	6.85	4.02	2.05	5.33	12.29	8.07	11.6	7.53	11.05	2.82
Merged-chr12-102398693-2	chr12	102398588	102398788	+	682.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	41125.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.04	1.26	1.71	0.8	9.0	6.59	11.63	7.09	9.24	7.53	0.5	3.13
Merged-chr3-105798938-2	chr3	105798922	105799122	+	682.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	2359.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.04	2.26	10.84	1.61	7.77	6.9	0.66	3.28	4.52	0.5	10.05	3.76
Merged-chr9-22117662-2	chr9	22117575	22117775	+	682.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	-480.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	6.86	5.79	5.7	5.63	8.59	4.08	11.29	7.37	7.08	8.54	6.03	6.27
Merged-chr18-80853519-3	chr18	80853421	80853621	+	682.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015805, intron 8 of 28)	RMER6A|LTR|ERVK	80537.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	2.42	5.03	10.84	3.62	2.86	7.21	9.63	10.99	11.01	9.04	7.03	10.34
Merged-chr3-84429514-1	chr3	84429414	84429614	+	682.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49593.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	3.02	0.0	4.02	16.36	6.59	5.65	7.71	1.38	1.51	0.0	1.88
Merged-chr3-94483503-1	chr3	94483403	94483603	+	682.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	781.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.4	2.01	2.28	3.22	5.32	7.53	6.64	5.61	1.77	2.01	0.0	2.19
Merged-chr2-44504456-3	chr2	44504362	44504562	+	682.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	357160.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	8.08	3.52	8.56	8.85	11.05	5.02	7.31	10.07	9.44	8.54	17.59	13.16
Merged-chr5-117495079-3	chr5	117494990	117495190	+	682.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	81088.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.04	13.58	7.42	7.24	9.82	10.03	7.31	7.93	9.83	12.05	4.52	10.02
Merged-chr7-6241068-1	chr7	6240968	6241168	+	682.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11642.0	NM_001177416	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	4.85	7.55	1.71	3.22	9.0	11.29	4.65	6.93	4.33	1.51	9.55	5.64
Merged-chr12-4476487-3	chr12	4476359	4476559	+	682.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	723.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	8.88	12.32	6.85	6.03	17.59	4.7	8.97	9.08	10.82	9.54	9.04	4.07
Merged-chr19-15923671-3	chr19	15923559	15923759	+	682.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177420, intron 1 of 8)	MTC|LTR|ERVL-MaLR	963.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	6.46	4.53	5.13	6.44	7.36	3.14	12.62	12.2	4.72	4.02	3.52	5.95
Merged-chr2-127338408-4	chr2	127338354	127338554	+	682.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172539)	promoter-TSS (NM_172539)	-185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	2.42	8.8	5.7	4.83	0.41	7.84	2.33	5.94	7.67	12.05	3.52	1.25
Merged-chr6-129476928-3	chr6	129476811	129477011	+	682.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4132.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	8.88	2.01	0.0	7.64	9.0	5.33	3.32	5.47	12.59	5.52	12.06	3.45
Merged-chr18-60745573-3	chr18	60745486	60745686	+	682.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1160.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	10.09	4.78	4.56	5.23	13.5	5.96	5.65	13.57	7.47	4.02	5.02	9.71
Merged-chr3-68952241-2	chr3	68952155	68952355	+	682.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026641, intron 8 of 19)	RLTR45|LTR|ERVK	52315.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	13.73	8.05	5.7	9.65	11.45	12.54	2.99	6.03	7.28	8.54	9.04	6.89
Merged-chr1-24468595-2	chr1	24468490	24468690	+	682.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	118847.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.63	2.01	2.85	5.63	6.95	11.92	5.98	5.5	11.6	8.54	18.09	5.95
Merged-chr15-37100407-2	chr15	37100292	37100492	+	682.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-92990.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	8.88	6.04	3.99	4.42	7.77	12.23	7.31	9.0	7.87	11.55	10.55	5.64
Merged-chr2-118726972-3	chr2	118726876	118727076	+	682.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	1462.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	6.46	5.03	13.12	9.25	7.77	6.59	9.3	9.31	10.62	3.51	12.56	5.01
Merged-chr11-106734014-3	chr11	106733893	106734093	+	682.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-17233.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	10.9	3.27	4.56	8.45	11.45	8.15	5.98	17.61	9.64	7.53	11.05	8.14
Merged-chr11-33115049-2	chr11	33114973	33115173	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	32327.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	8.48	6.04	5.7	6.03	6.55	3.14	5.65	5.55	0.39	6.03	5.53	0.94
Merged-chr5-3279237-1	chr5	3279137	3279337	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-64656.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.23	2.52	1.71	10.05	7.77	10.66	4.98	1.18	3.74	10.54	2.51	3.76
Merged-chr15-58660719-1	chr15	58660619	58660819	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	162708.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.63	4.02	1.14	5.23	0.0	6.9	0.66	5.55	1.38	3.01	4.52	0.94
Merged-chr1-172346441-1	chr1	172346341	172346541	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5231.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	9.29	3.52	6.85	7.64	9.0	2.2	4.32	2.92	10.23	10.54	10.55	5.95
Merged-chr7-43678698-1	chr7	43678598	43678798	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_145582)	TTS (NM_145582)	6667.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.27	5.53	5.13	6.03	9.41	10.66	6.31	4.51	6.49	4.02	9.04	3.45
Merged-chr11-69558863-3	chr11	69558757	69558957	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007911, intron 1 of 4)	intron (NM_007911, intron 1 of 4)	1380.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	8.48	10.31	4.56	18.9	4.5	6.9	18.6	8.07	9.24	8.03	5.02	12.22
Merged-chr14-9828835-1	chr14	9828735	9828935	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 7 of 9)	intron (NM_001360141, intron 7 of 9)	-55260.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	1.62	0.75	1.14	1.61	2.86	2.51	5.65	5.5	2.95	1.0	6.03	0.31
Merged-chr11-11564456-1	chr11	11564356	11564556	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63382.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	3.63	5.28	2.85	8.04	5.32	4.7	6.64	4.35	6.29	2.51	1.51	3.76
Merged-chr8-109039984-1	chr8	109039884	109040084	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35238.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	3.63	0.5	6.28	6.03	7.77	4.7	5.98	13.77	6.49	2.01	7.03	3.76
Merged-chr3-36318469-1	chr3	36318369	36318569	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-96194.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	5.65	1.51	0.0	0.0	5.32	2.51	0.0	6.28	5.11	4.02	3.01	6.27
Merged-chr13-101812135-1	chr13	101812035	101812235	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43918.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	1.62	2.52	5.13	7.64	10.64	2.51	2.33	7.07	5.9	4.02	8.54	5.33
Merged-chr7-30608108-1	chr7	30608008	30608208	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026815, intron 3 of 7)	intron (NM_026815, intron 3 of 7)	4626.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	8.48	5.03	2.28	4.02	6.14	6.9	1.66	2.72	9.05	5.52	11.05	5.01
Merged-chr4-53352893-1	chr4	53352793	53352993	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12E|LTR|ERVK	-82661.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.04	2.01	7.42	7.64	4.09	6.59	3.65	8.33	6.49	4.52	1.0	8.77
Merged-chr10-120812206-1	chr10	120812106	120812306	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-45423.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	1.62	8.55	5.7	6.03	6.95	16.62	1.99	6.22	4.92	8.54	6.53	0.63
Merged-chr1-88228207-1	chr1	88228107	88228307	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 2 of 41)	intron (NM_001281466, intron 2 of 41)	1187.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	3.52	1.14	4.02	13.09	0.94	7.64	2.19	5.31	5.02	2.51	3.76
Merged-chr7-16491930-1	chr7	16491830	16492030	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15150.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	6.06	2.01	6.28	3.22	2.45	2.51	3.65	6.14	12.78	13.05	9.04	7.21
Merged-chr3-103421213-1	chr3	103421113	103421313	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141920.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	4.44	0.5	0.0	4.83	2.05	7.53	2.33	5.21	3.93	1.0	10.05	4.39
Merged-chr10-62426725-1	chr10	62426625	62426825	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4268.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.81	3.27	7.42	0.4	5.73	8.15	2.66	7.37	6.29	3.01	8.04	9.4
Merged-chr11-20216580-1	chr11	20216480	20216680	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008996, intron 2 of 5)	B2_Mm2|SINE|B2	15168.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.44	9.06	21.11	1.61	4.91	6.9	1.33	3.0	7.67	17.07	7.03	6.27
Merged-chr10-75943337-1	chr10	75943237	75943437	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-2665.0	NM_001277132	333670.0	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.81	4.28	5.7	3.22	3.27	6.9	3.65	5.72	4.92	0.5	12.56	3.76
Merged-chr2-103721934-1	chr2	103721834	103722034	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153126, intron 28 of 28)	intron (NM_153126, intron 28 of 28)	39336.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	8.3	7.99	2.82	0.82	0.0	0.0	0.36	6.49	1.0	0.5	3.45
Merged-chr1-191609758-1	chr1	191609658	191609858	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178632, intron 11 of 19)	MTC|LTR|ERVL-MaLR	34122.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	8.88	10.06	18.25	10.86	5.73	3.14	1.33	9.42	10.42	3.01	4.52	3.13
Merged-chr4-8709736-3	chr4	8709648	8709848	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	19342.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.48	4.28	4.56	8.04	7.36	4.7	5.31	12.59	12.0	4.52	11.05	6.58
Merged-chr14-55105709-3	chr14	55105569	55105769	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007455, intron 2 of 21)	intron (NM_007455, intron 2 of 21)	924.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	5.65	5.28	10.27	4.02	10.64	8.47	6.98	2.05	8.06	9.04	18.59	5.95
Merged-chr5-137785776-1	chr5	137785676	137785876	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	925.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	13.73	10.06	10.27	8.45	12.68	20.38	6.98	6.34	15.93	11.55	7.54	10.34
Merged-chr4-58585545-2	chr4	58585447	58585647	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32056.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.65	6.29	9.7	12.07	8.18	8.15	2.66	8.41	15.93	7.03	11.56	4.7
Merged-chr10-26564643-1	chr10	26564543	26564743	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110008.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.81	6.29	4.56	3.62	2.05	2.51	6.31	2.24	11.6	9.04	12.06	6.58
Merged-chrX-36761083-2	chrX	36760968	36761168	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 2 of 3)	intron (NR_075097, intron 2 of 3)	17436.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	0.81	4.28	5.13	4.83	6.55	0.94	2.33	6.9	6.88	6.53	10.55	9.08
Merged-chr2-170173981-1	chr2	170173881	170174081	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31306.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.21	6.54	3.42	2.82	9.41	6.59	6.31	6.45	4.33	3.51	8.04	2.82
Merged-chr13-99028731-1	chr13	99028631	99028831	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-44166.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.85	7.04	4.56	7.24	6.14	9.41	12.62	11.27	10.62	4.02	7.54	2.82
Merged-chr1-153526833-1	chr1	153526733	153526933	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028749, intron 5 of 11)	intron (NM_028749, intron 5 of 11)	22881.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.04	2.26	0.0	4.42	9.0	3.76	1.33	7.23	2.95	6.03	6.03	0.63
Merged-chr18-61133923-1	chr18	61133823	61134023	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178277, exon 19 of 20)	exon (NM_178277, exon 19 of 20)	16455.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	1.62	7.55	3.42	5.63	6.14	2.2	3.99	1.65	3.74	7.03	2.01	5.33
Merged-chr3-9793852-1	chr3	9793752	9793952	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	39827.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.42	3.52	9.7	1.61	4.09	1.57	2.66	3.64	11.41	1.51	4.02	9.4
Merged-chrX-151017810-1	chrX	151017710	151017910	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168600)	promoter-TSS (NM_001168600)	-488.0	NM_198110	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	3.63	7.8	1.14	0.0	2.05	6.27	3.32	4.32	3.15	3.51	8.54	5.01
Merged-chr4-89270709-1	chr4	89270609	89270809	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	11483.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	4.85	4.02	3.99	3.62	9.82	11.6	5.65	2.92	6.29	3.01	9.04	5.33
Merged-chr10-71306372-1	chr10	71306272	71306472	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-4373.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	3.23	7.55	2.28	5.23	8.59	4.7	6.64	5.1	14.75	5.52	11.56	6.27
Merged-chr6-15790260-1	chr6	15790160	15790360	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	69599.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	1.62	5.03	3.99	8.04	2.45	5.02	3.65	9.06	8.06	8.03	19.09	5.33
Merged-chr4-149838971-1	chr4	149838871	149839071	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64704.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.42	0.0	4.56	0.0	0.82	1.88	9.3	2.1	4.33	4.02	4.02	2.19
Merged-chr13-97534069-1	chr13	97533969	97534169	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25931.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.23	2.52	2.28	2.01	4.09	5.02	1.33	6.84	5.9	2.51	5.02	1.88
Merged-chr16-24312881-1	chr16	24312781	24312981	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80469.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.25	4.02	10.84	6.44	1.64	7.84	3.99	6.39	12.0	5.02	4.02	4.07
Merged-chr5-109563038-1	chr5	109562938	109563138	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	-4045.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	1.62	2.52	0.57	4.42	0.82	1.88	0.0	1.04	12.19	2.51	9.04	8.77
Merged-chr8-13758101-1	chr8	13758001	13758201	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	445.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	4.44	2.52	2.85	3.62	4.09	8.15	6.64	4.96	3.93	6.53	11.05	3.45
Merged-chr8-35588395-2	chr8	35588283	35588483	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081279, exon 1 of 3)	exon (NM_001081279, exon 1 of 3)	585.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	9.29	5.79	2.85	2.82	10.64	8.47	17.61	5.19	6.69	9.54	7.03	11.59
Merged-chr4-47294042-1	chr4	47293942	47294142	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009928, intron 28 of 39)	intron (NM_009928, intron 28 of 39)	-59180.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.81	2.52	1.14	0.0	6.95	8.15	5.31	6.95	2.95	6.53	3.52	3.76
Merged-chr15-79756533-1	chr15	79756433	79756633	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	13835.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	9.29	2.52	1.14	0.0	8.18	2.82	7.31	5.83	4.33	4.52	1.51	1.25
Merged-chr7-31007934-1	chr7	31007834	31008034	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26013.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	2.42	3.52	3.99	7.24	9.0	3.14	5.98	9.31	11.6	6.03	14.07	9.08
Merged-chr12-35576318-3	chr12	35576239	35576439	+	681.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41350.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	8.08	9.56	3.99	7.64	11.45	8.15	9.97	16.88	14.95	6.53	6.03	6.89
Merged-chr7-110287035-3	chr7	110286910	110287110	+	681.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65307.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	7.27	9.31	2.28	8.45	9.82	12.23	3.99	4.35	10.03	7.53	12.06	5.64
Merged-chr16-24643184-3	chr16	24643080	24643280	+	681.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-78675.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	15.75	6.54	1.71	12.47	12.68	10.35	5.98	4.82	9.44	13.05	7.54	5.95
Merged-chr6-84031459-3	chr6	84031346	84031546	+	681.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	MTD|LTR|ERVL-MaLR	12060.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	8.88	5.79	6.85	10.86	7.77	7.53	7.64	9.56	7.47	11.05	11.56	10.02
Merged-chr3-99253949-2	chr3	99253816	99254016	+	681.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009323, exon 1 of 8)	exon (NM_009323, exon 1 of 8)	156.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	8.08	1.76	7.42	7.24	8.59	4.7	3.99	7.6	7.87	7.53	8.04	10.34
Merged-chr10-117216990-3	chr10	117216887	117217087	+	681.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	7520.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	11.71	16.6	11.98	7.24	5.32	5.02	3.65	9.48	20.46	20.59	12.56	12.22
Merged-chr5-36698292-2	chr5	36698188	36698388	+	681.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2267.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	13.73	5.03	9.7	4.42	8.59	8.78	2.99	5.41	8.85	7.03	10.05	3.76
Merged-chr7-58731008-2	chr7	58730904	58731104	+	681.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	72802.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	10.9	8.8	7.99	7.64	2.45	4.08	1.99	5.1	7.87	11.05	14.57	4.39
Merged-chr1-87656292-3	chr1	87656186	87656386	+	681.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	35974.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.06	9.81	10.27	10.86	7.77	4.39	2.66	7.49	10.23	9.54	3.52	6.58
Merged-chr9-100455255-1	chr9	100455155	100455355	+	681.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31218.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.42	10.06	2.85	6.44	8.18	8.15	9.3	7.54	3.93	3.01	4.02	4.7
Merged-chr14-55644459-3	chr14	55644272	55644472	+	681.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028780)	promoter-TSS (NM_028780)	-566.0	NM_028780	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	3.23	4.02	5.7	1.61	2.86	2.51	4.65	4.91	3.15	12.05	1.0	5.01
Merged-chr16-92693371-3	chr16	92693286	92693486	+	681.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3943.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.65	9.06	5.7	7.24	8.18	7.53	2.66	12.22	10.03	5.52	9.55	7.83
Merged-chr1-74712208-3	chr1	74712117	74712317	+	681.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1318.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	6.06	6.29	6.85	9.25	6.55	3.14	5.31	4.74	12.98	13.56	15.58	5.64
Merged-chr9-83447988-2	chr9	83447895	83448095	+	681.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102437, intron 2 of 2)	intron (NR_102437, intron 2 of 2)	-6868.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	7.67	6.54	2.28	8.04	9.41	10.35	10.63	7.4	6.88	3.51	7.03	7.21
Merged-chr19-32758989-2	chr19	32758899	32759099	+	681.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1422.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.06	4.53	3.99	6.44	8.18	5.64	4.32	7.88	8.26	15.06	6.53	7.52
Merged-chr12-76372104-3	chr12	76371965	76372165	+	681.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1799.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	9.29	6.79	11.98	8.85	5.73	6.59	2.66	8.58	9.05	2.01	8.04	5.01
Merged-chr4-133879438-1	chr4	133879338	133879538	+	681.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4707.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.48	3.27	4.56	2.41	7.36	10.35	7.97	6.03	5.7	7.03	13.57	5.01
Merged-chr13-54758548-3	chr13	54758455	54758655	+	681.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033610)	TTS (NM_033610)	8040.0	NM_001362407	104069.0	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	10.9	11.32	9.13	8.85	9.0	10.03	4.65	7.91	13.57	12.55	6.53	5.64
Merged-chr13-39011939-2	chr13	39011843	39012043	+	681.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-51068.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	5.65	8.8	9.13	12.07	5.73	9.41	14.95	7.32	3.54	5.02	12.06	5.95
Merged-chr5-24602171-1	chr5	24602071	24602271	+	681.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-169.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	3.63	4.02	11.41	4.42	7.36	4.39	5.65	7.26	6.88	6.03	10.05	1.25
Merged-chr6-47562640-2	chr6	47562543	47562743	+	681.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	32387.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	5.25	6.54	0.0	6.44	9.41	6.27	3.99	8.52	6.49	2.51	2.01	5.01
Merged-chr8-72646560-2	chr8	72646449	72646649	+	681.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176940)	promoter-TSS (NM_176940)	-162.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	9.29	8.3	6.28	10.05	1.23	5.02	6.64	2.47	9.83	7.03	5.53	7.52
Merged-chr11-98740689-2	chr11	98740587	98740787	+	681.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1098.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	6.86	4.53	1.71	8.45	9.82	6.59	5.65	5.1	5.11	16.07	16.08	2.82
Merged-chr13-37671306-2	chr13	37671209	37671409	+	681.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-154729.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.62	5.28	1.14	1.21	9.0	18.19	6.98	8.24	10.62	13.05	12.06	4.07
Merged-chr6-38432727-3	chr6	38432681	38432881	+	681.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1144.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	10.5	7.55	8.56	6.03	12.27	8.47	6.31	3.17	9.44	4.52	9.04	9.08
Merged-chr11-103269606-3	chr11	103269525	103269725	+	681.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2224.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	11.31	14.09	5.13	7.64	11.45	15.99	3.65	5.1	15.34	10.54	7.54	4.39
Merged-chr15-24621638-2	chr15	24621553	24621753	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	792111.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.46	3.02	18.83	9.25	6.55	5.02	7.97	14.1	10.82	5.02	12.06	11.9
Merged-chr17-55702543-1	chr17	55702443	55702643	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151542, intron 3 of 16)	intron (NR_151542, intron 3 of 16)	10093.0	NM_028370	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	8.48	7.55	3.99	0.8	6.95	6.27	3.65	6.93	5.31	8.54	6.03	1.57
Merged-chr4-45612337-2	chr4	45612234	45612434	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27602.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	4.85	1.51	5.7	3.22	10.23	5.64	2.66	7.32	9.05	11.05	16.08	13.16
Merged-chr7-65373498-1	chr7	65373398	65373598	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2254.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	4.04	6.29	5.13	7.24	2.05	10.66	6.31	7.01	2.75	5.52	6.53	3.76
Merged-chr14-103547876-2	chr14	103547827	103548027	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 8 of 30)	B1_Mm|SINE|Alu	34586.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.42	5.53	15.4	3.22	2.45	5.33	4.65	1.29	8.85	4.52	6.53	6.27
Merged-chr18-67250023-2	chr18	67249921	67250121	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4191.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	7.67	3.27	2.85	11.66	0.82	5.64	1.99	4.93	10.03	9.54	17.59	7.21
Merged-chr6-108688519-3	chr6	108688404	108688604	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27570.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.46	7.29	15.4	1.61	4.5	15.68	11.29	5.33	8.65	6.53	19.6	7.21
Merged-chr19-45018441-2	chr19	45018357	45018557	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	322.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	7.27	9.81	7.99	5.23	4.5	15.37	4.65	2.86	7.67	10.04	4.52	9.08
Merged-chr11-99194780-2	chr11	99194685	99194885	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	36232.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	7.67	8.55	7.99	4.83	2.45	7.84	8.64	2.97	7.28	2.51	11.05	5.95
Merged-chr17-35002022-1	chr17	35001922	35002122	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011690, intron 2 of 29)	intron (NM_011690, intron 2 of 29)	1115.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	7.67	4.53	2.85	2.41	6.55	6.9	4.32	5.83	13.37	4.02	7.03	5.33
Merged-chr11-97151563-2	chr11	97151441	97151641	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1829.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	5.25	9.81	3.99	4.02	9.41	3.76	8.64	5.72	7.87	9.54	10.05	4.7
Merged-chr19-46521507-3	chr19	46521402	46521602	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19854.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.48	4.28	6.28	2.82	12.68	10.98	4.65	6.98	11.21	9.54	11.05	9.08
Merged-chr4-106970941-2	chr4	106970848	106971048	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	47763.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.23	4.02	7.42	3.22	1.23	7.53	1.99	6.93	6.88	5.02	11.56	4.07
Merged-chr16-88478232-2	chr16	88478119	88478319	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28759.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	2.02	4.02	0.0	1.21	5.32	19.44	8.97	6.53	8.26	5.02	7.54	4.7
Merged-chr3-98128991-1	chr3	98128891	98129091	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 22 of 33)	intron (NM_010928, intron 22 of 33)	-31643.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	3.63	7.04	14.26	7.24	8.18	6.59	5.65	16.01	6.1	2.01	8.04	6.58
Merged-chr16-95732437-2	chr16	95732309	95732509	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30002.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.25	4.28	11.41	5.63	5.73	3.14	8.3	7.15	6.69	7.53	7.54	9.08
Merged-chr11-82010797-1	chr11	82010697	82010897	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24780.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.46	1.76	4.56	4.83	10.64	6.9	5.98	4.6	6.29	8.03	10.55	4.7
Merged-chr3-142474619-2	chr3	142474520	142474720	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22314.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.25	1.01	3.99	3.22	9.41	7.21	3.99	6.87	8.46	11.55	8.54	5.33
Merged-chr18-35745437-3	chr18	35745352	35745552	+	681.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-4898.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	8.48	8.8	3.99	2.41	12.27	8.47	3.99	4.65	12.78	9.04	5.53	8.46
Merged-chr3-93556164-3	chr3	93556060	93556260	+	681.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009112, intron 1 of 2)	intron (NM_009112, intron 1 of 2)	1043.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	9.29	9.81	10.84	9.25	4.91	6.59	8.3	9.14	13.96	8.03	9.04	3.76
Merged-chr5-129020974-2	chr5	129020870	129021070	+	681.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009391, exon 4 of 7)	exon (NM_009391, exon 4 of 7)	814.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	5.25	9.56	0.0	6.84	8.59	6.9	11.29	6.98	9.44	11.05	10.55	9.08
Merged-chr15-31602627-2	chr15	31602551	31602751	+	681.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	535.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	13.73	5.53	1.14	1.61	9.0	8.15	6.98	11.41	8.26	8.54	11.05	8.14
Merged-chr7-4528157-3	chr7	4528065	4528265	+	681.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	4277.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	7.27	7.04	7.99	12.47	9.41	5.64	3.99	5.92	16.72	10.04	11.56	7.83
Merged-chr9-96035553-2	chr9	96035458	96035658	+	681.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311130, intron 33 of 41)	intron (NM_001311130, intron 33 of 41)	80798.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	6.86	7.29	6.85	8.85	5.32	8.47	7.31	6.87	6.88	11.55	7.54	3.13
Merged-chr2-148375800-2	chr2	148375747	148375947	+	681.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19530.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	12.11	4.28	6.85	6.84	6.14	5.96	6.98	3.45	3.74	3.51	15.58	6.89
Merged-chr13-93094295-2	chr13	93094193	93094393	+	681.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_046182)	promoter-TSS (NR_046182)	-540.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	7.67	9.56	5.13	3.22	7.36	10.35	10.3	3.62	9.05	11.55	3.52	3.76
Merged-chr8-125574400-3	chr8	125574266	125574466	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4503.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.23	8.05	1.14	11.66	2.45	2.82	3.65	4.43	7.28	10.04	6.53	2.51
Merged-chr12-55820395-1	chr12	55820295	55820495	+	681.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003719, intron 1 of 39)	intron (NM_001003719, intron 1 of 39)	1121.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	4.04	6.29	5.13	2.01	7.36	5.33	12.62	6.03	1.97	9.04	7.03	2.19
Merged-chr17-56337422-3	chr17	56337320	56337520	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11370.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	13.33	9.31	6.28	1.61	8.59	9.72	5.31	7.88	16.33	7.03	5.53	8.46
Merged-chr6-149120089-1	chr6	149119989	149120189	+	681.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER90a|LTR|ERV1	-18409.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	6.46	1.51	1.14	2.01	6.55	12.23	4.65	8.27	12.59	4.02	7.03	5.64
Merged-chr11-21048174-3	chr11	21048067	21048267	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43157.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	13.73	7.8	5.7	3.22	7.77	12.86	7.31	4.85	16.52	21.09	7.03	2.51
Merged-chrX-134539962-3	chrX	134539863	134540063	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013898, intron 1 of 1)	B2_Mm1a|SINE|B2	1707.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	11.71	6.54	2.85	2.41	6.55	10.66	5.65	1.85	13.77	7.03	11.05	11.28
Merged-chr7-110260117-3	chr7	110260010	110260210	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 3 of 11)	intron (NM_009302, intron 3 of 11)	38407.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	1.62	7.8	9.7	8.45	12.68	6.59	8.97	10.96	9.05	7.03	5.02	9.71
Merged-chr1-176819470-1	chr1	176819370	176819570	+	681.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4810.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	4.04	5.53	6.85	4.42	4.91	2.82	4.32	5.8	11.8	10.04	14.07	6.27
Merged-chrX-159911790-3	chrX	159911668	159911868	+	681.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	intron (NM_001135728, intron 4 of 12)	-30925.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	7.67	4.78	4.56	10.05	15.14	10.66	4.98	17.61	7.08	12.05	28.64	6.27
Merged-chr14-31272414-2	chr14	31272318	31272518	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033668, exon 54 of 78)	exon (NM_001033668, exon 54 of 78)	20929.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	6.06	6.04	5.7	10.05	3.68	4.7	6.98	8.33	7.28	8.03	15.58	6.27
Merged-chr17-15652798-2	chr17	15652703	15652903	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12H|LTR|ERVK	21015.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	10.09	7.04	3.99	8.85	6.14	5.33	8.64	12.36	3.74	3.51	6.03	5.01
Merged-chr15-79693909-2	chr15	79693823	79694023	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013818, intron 1 of 11)	intron (NM_013818, intron 1 of 11)	3027.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	8.88	6.04	11.41	8.04	8.18	13.48	2.99	5.5	16.72	9.54	9.55	5.64
Merged-chr4-132806382-2	chr4	132806285	132806485	+	681.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-10021.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	12.11	4.78	5.7	9.65	12.27	14.74	0.66	5.64	24.19	14.06	14.57	8.77
Merged-chr13-6836938-2	chr13	6836861	6837061	+	681.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-188190.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.81	1.76	3.42	4.02	4.91	2.82	4.98	6.95	11.21	5.02	8.04	5.33
Merged-chr1-97647772-2	chr1	97647663	97647863	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	13913.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.46	12.58	7.99	9.65	6.95	9.41	5.98	12.93	6.69	6.03	6.03	6.27
Merged-chr4-26345977-3	chr4	26345865	26346065	+	681.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172865, intron 1 of 4)	intron (NM_172865, intron 1 of 4)	687.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	8.88	7.55	7.99	5.23	3.27	7.53	9.63	8.83	7.87	4.52	7.54	4.7
Merged-chr1-64919483-3	chr1	64919386	64919586	+	681.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37338.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	8.88	7.8	6.85	8.45	9.0	6.59	10.63	13.65	10.03	9.04	14.57	11.59
Merged-chr13-9504535-3	chr13	9504437	9504637	+	681.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	228012.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	9.69	4.78	2.85	7.24	13.5	5.64	10.96	8.13	5.11	3.51	11.05	6.58
Merged-chr11-117081862-2	chr11	117081762	117081962	+	681.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4514.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	5.65	5.28	2.28	3.62	10.64	8.47	5.98	5.94	9.83	7.03	10.05	9.71
Merged-chrX-75034333-3	chrX	75034256	75034456	+	681.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181584, intron 1 of 9)	L1_Mus2|LINE|L1	50549.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	8.88	5.79	11.41	10.46	11.05	17.87	7.31	4.65	9.44	6.53	11.05	7.21
Merged-chrX-38466460-3	chrX	38466299	38466499	+	681.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9939.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	2.02	7.55	3.99	11.66	2.86	2.51	5.98	3.59	3.93	3.51	6.03	5.64
Merged-chr7-114081739-1	chr7	114081639	114081839	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	36042.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.46	3.52	5.13	5.63	4.09	8.78	3.32	3.84	9.05	5.52	10.05	7.21
Merged-chr2-166746695-1	chr2	166746595	166746795	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-32863.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.25	3.52	3.99	0.8	1.64	7.21	5.65	1.04	8.26	4.52	7.54	6.27
Merged-chr19-21128661-1	chr19	21128561	21128761	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23951.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.42	2.52	2.28	4.42	2.05	5.02	1.33	2.36	9.44	3.51	12.06	4.39
Merged-chr4-107179352-1	chr4	107179252	107179452	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	722.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	5.65	6.04	2.28	8.45	15.55	6.59	3.65	6.67	5.9	9.54	7.54	8.46
Merged-chr9-7839194-3	chr9	7839093	7839293	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2136.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	7.67	7.04	5.7	3.22	14.32	7.84	5.98	6.73	7.67	13.56	15.58	4.7
Merged-chr5-108269486-1	chr5	108269386	108269586	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_026106, exon 1 of 3)	5' UTR (NM_026106, exon 1 of 3)	589.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.81	2.01	6.85	0.0	2.86	10.03	7.64	3.31	5.51	12.55	7.03	2.51
Merged-chr7-128460681-3	chr7	128460538	128460738	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347641, intron 1 of 12)	intron (NM_001347641, intron 1 of 12)	875.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	4.85	4.53	9.13	4.42	3.68	5.96	5.98	4.51	6.69	10.54	7.03	2.82
Merged-chr3-96171206-1	chr3	96171106	96171306	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_181409, exon 17 of 17)	exon (NM_181409, exon 17 of 17)	-1300.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	1.62	2.77	0.0	2.41	4.09	3.45	1.0	5.64	2.95	1.51	2.51	5.01
Merged-chr16-38562430-1	chr16	38562330	38562530	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	-384.0	NM_001205287	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	4.44	3.77	7.99	4.02	2.05	5.33	7.97	6.2	4.13	4.52	3.52	7.83
Merged-chr2-58199605-2	chr2	58199483	58199683	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35609.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	2.83	4.53	17.11	3.62	8.18	7.84	1.99	11.16	10.23	6.03	13.57	7.83
Merged-chr3-154318009-1	chr3	154317909	154318109	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010713, intron 6 of 8)	intron (NM_010713, intron 6 of 8)	12551.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.85	2.01	2.85	1.21	7.36	4.39	4.32	5.33	4.13	4.02	7.54	3.45
Merged-chr11-50224061-2	chr11	50223964	50224164	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-1271.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	4.85	9.56	0.57	13.67	13.5	2.51	8.3	4.91	5.7	3.51	7.54	1.88
Merged-chr6-108599482-1	chr6	108599382	108599582	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104577, intron 3 of 6)	MLTR14|LTR|ERV1	23685.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.06	1.76	5.7	5.63	6.55	5.64	1.66	8.16	6.88	3.01	11.56	5.33
Merged-chr16-10399361-1	chr16	10399261	10399461	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3896.0	NM_001291001	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	2.83	4.02	3.42	8.04	0.82	6.27	0.66	5.16	7.87	5.52	10.55	1.57
Merged-chr5-140742069-2	chr5	140741975	140742175	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 3 of 7)	intron (NM_173405, intron 3 of 7)	17948.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.25	10.06	5.7	2.82	10.23	8.47	4.98	5.72	12.0	12.05	13.06	7.83
Merged-chr10-20475029-1	chr10	20474929	20475129	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347366, intron 2 of 11)	intron (NM_001347366, intron 2 of 11)	73299.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.27	4.28	5.13	11.26	3.68	2.2	10.63	7.01	2.75	2.01	4.52	2.19
Merged-chr7-79475002-1	chr7	79474902	79475102	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8729.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	6.06	1.51	2.85	2.41	2.45	10.03	10.63	2.69	4.72	4.02	0.5	3.13
Merged-chr11-22853557-1	chr11	22853457	22853657	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	6178.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	2.42	6.79	0.0	1.61	0.82	3.45	7.31	2.72	4.13	4.02	0.5	0.31
Merged-chr1-51911407-1	chr1	51911307	51911507	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	4571.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.83	3.02	0.57	6.03	3.27	4.39	1.66	6.0	3.74	1.51	0.0	3.45
Merged-chr17-87154621-1	chr17	87154521	87154721	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	40321.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	4.04	0.5	3.42	0.8	1.64	3.14	5.31	5.86	0.98	1.0	0.0	0.0
Merged-chr5-90881129-1	chr5	90881029	90881229	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10116.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	12.92	7.29	5.13	1.61	10.23	7.21	5.31	1.99	5.7	11.55	7.03	4.07
Merged-chr11-28202310-1	chr11	28202210	28202410	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	382014.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.0	0.0	0.0	0.4	5.32	3.45	3.65	6.03	2.16	6.03	10.55	5.95
Merged-chr6-84058816-1	chr6	84058716	84058916	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	39430.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	7.67	2.52	1.14	6.44	4.91	1.57	6.98	11.75	7.47	8.54	5.02	6.27
Merged-chr4-138327382-1	chr4	138327282	138327482	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-1086.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	0.4	0.0	0.0	0.8	0.0	0.31	0.0	0.0	12.59	4.52	2.51	7.21
Merged-chr14-70241651-1	chr14	70241551	70241751	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360229, intron 6 of 12)	RLTR12B|LTR|ERVK	-33980.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	1.21	1.51	1.14	0.8	5.73	1.88	0.66	6.73	2.36	9.54	10.55	5.33
Merged-chr18-7703651-1	chr18	7703551	7703751	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76788.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	1.62	2.52	0.0	3.62	1.64	0.63	1.99	1.82	9.24	4.02	7.54	5.33
Merged-chr4-33249365-1	chr4	33249265	33249465	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	-578.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.85	0.5	2.85	4.42	4.91	2.82	5.98	4.09	9.05	8.54	3.52	7.21
Merged-chr2-3788518-1	chr2	3788418	3788618	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75060.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	1.21	5.53	1.71	6.44	5.32	2.82	4.98	6.93	5.11	0.5	0.0	5.33
Merged-chr4-32486031-1	chr4	32485931	32486131	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	68596.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.63	2.01	2.28	6.84	5.32	5.64	5.31	7.09	4.33	1.0	2.01	2.19
Merged-chr11-50430436-2	chr11	50430339	50430539	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	672.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	4.44	5.53	2.85	5.63	13.91	9.72	5.98	4.96	7.08	11.05	4.52	10.02
Merged-chr9-123270191-1	chr9	123270091	123270291	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9402.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.4	2.52	2.28	3.62	3.68	4.39	4.98	1.88	3.74	1.0	3.52	4.07
Merged-chr17-17386354-1	chr17	17386254	17386454	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025934, intron 7 of 9)	MTD|LTR|ERVL-MaLR	12022.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	3.63	5.53	2.28	2.82	1.64	6.59	1.99	7.79	5.11	4.02	9.04	2.19
Merged-chr1-39608679-1	chr1	39608579	39608779	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31332.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	5.32	3.14	1.66	5.19	1.57	1.51	7.54	2.51
Merged-chr19-37704124-1	chr19	37704024	37704224	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6316.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	10.09	6.79	4.56	4.83	9.41	5.96	2.33	3.36	7.08	9.04	8.54	3.45
Merged-chr14-75833094-1	chr14	75832994	75833194	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11870.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	1.62	4.53	2.85	1.61	4.91	6.27	2.66	6.25	3.54	6.03	5.53	7.21
Merged-chr13-37761147-1	chr13	37761047	37761247	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64891.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.06	3.02	9.13	3.22	6.14	3.76	2.33	8.13	11.41	3.51	4.02	4.7
Merged-chr13-37880734-1	chr13	37880634	37880834	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-7700.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.23	3.27	0.0	5.23	2.45	2.82	2.99	4.29	3.54	2.01	1.0	5.33
Merged-chr5-3512723-1	chr5	3512623	3512823	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-31110.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.04	3.77	2.28	2.41	9.0	5.33	3.99	7.79	5.9	4.02	10.55	2.82
Merged-chr2-143834273-1	chr2	143834173	143834373	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	28900.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	5.65	2.01	6.28	4.83	6.14	4.08	5.98	6.17	3.93	1.51	2.51	4.39
Merged-chr3-52066461-1	chr3	52066361	52066561	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	38545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.81	1.51	0.0	0.0	6.14	4.39	10.3	6.9	3.34	7.53	3.52	1.57
Merged-chr1-91258016-1	chr1	91257916	91258116	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 3 of 10)	intron (NM_001355764, intron 3 of 10)	7450.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	2.42	1.51	1.14	0.8	1.64	10.98	0.66	4.21	2.16	5.52	2.51	3.45
Merged-chr16-38773022-1	chr16	38772922	38773122	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178924)	TTS (NM_178924)	27181.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	8.48	1.76	11.41	4.02	4.09	5.33	11.29	6.59	8.26	1.51	9.04	4.39
Merged-chr4-138178110-1	chr4	138178010	138178210	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 22 of 32)	intron (NM_001355699, intron 22 of 32)	14901.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	5.25	2.01	5.7	1.61	6.55	0.94	0.33	6.03	0.2	0.0	1.0	0.0
Merged-chr11-58103530-1	chr11	58103430	58103630	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	-440.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.85	6.79	1.71	3.22	10.23	6.9	4.98	1.07	4.72	3.51	3.01	3.76
Merged-chr15-76805230-1	chr15	76805130	76805330	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	B3|SINE|B2	12940.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.46	2.26	5.7	6.03	5.73	4.08	6.64	8.75	4.92	2.51	2.01	3.13
Merged-chr10-56374752-1	chr10	56374652	56374852	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2548.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	7.27	3.52	0.0	0.0	1.64	1.88	7.97	5.94	4.52	1.51	2.51	2.82
Merged-chr1-191098793-1	chr1	191098693	191098893	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030060, intron 1 of 2)	intron (NM_030060, intron 1 of 2)	379.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.65	7.55	10.84	5.63	6.95	14.11	8.64	11.16	10.82	5.02	6.53	11.28
Merged-chr14-10229337-1	chr14	10229237	10229437	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	224121.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.81	2.26	1.71	1.21	4.5	1.25	4.32	4.82	1.97	1.0	1.0	1.88
Merged-chr1-86416485-3	chr1	86416393	86416593	+	680.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9836.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	8.88	9.81	9.13	7.24	11.86	22.58	5.65	9.03	9.64	13.56	11.05	8.77
Merged-chr17-88524193-2	chr17	88524095	88524295	+	680.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5929.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	7.27	4.78	10.27	18.5	13.91	13.17	7.31	8.44	0.98	1.51	2.01	0.94
Merged-chr10-13295279-2	chr10	13295167	13295367	+	680.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	29022.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.04	2.01	10.27	3.22	12.27	10.03	2.66	3.81	7.28	5.02	6.03	2.51
Merged-chr3-131552783-2	chr3	131552655	131552855	+	680.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12013.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	1.62	9.31	10.27	10.86	8.59	5.96	6.64	7.07	14.55	4.52	6.03	7.21
Merged-chr1-151422373-3	chr1	151422289	151422489	+	680.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025819, intron 2 of 19)	intron (NM_025819, intron 2 of 19)	6046.0	NM_025819	66875.0	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	12.92	9.06	11.41	12.07	6.95	8.78	5.31	6.73	11.8	6.53	9.55	6.27
Merged-chr2-38346587-3	chr2	38346497	38346697	+	680.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290646, intron 1 of 4)	intron (NM_001290646, intron 1 of 4)	-4711.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	10.5	17.86	15.97	23.33	6.14	9.41	5.31	20.22	10.03	4.02	10.05	10.34
Merged-chr19-12000887-2	chr19	12000803	12001003	+	680.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35059.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	6.06	5.53	7.42	8.04	9.0	10.35	5.31	7.65	5.9	3.51	6.03	10.65
Merged-chr14-25857319-2	chr14	25857207	25857407	+	680.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	MIR3|SINE|MIR	15152.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	1.62	3.77	8.56	1.61	13.5	6.9	1.66	4.91	12.39	9.04	10.55	3.76
Merged-chr8-67515977-2	chr8	67515852	67516052	+	680.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-7902.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	3.63	3.77	5.13	5.23	6.95	4.08	5.65	5.44	11.01	5.02	6.53	3.76
Merged-chr5-143509912-2	chr5	143509819	143510019	+	680.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	18074.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	1.62	7.04	11.98	6.84	6.55	8.47	5.98	6.67	4.92	1.51	8.54	3.76
Merged-chr10-94476958-3	chr10	94476866	94477066	+	680.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	RLTR20D|LTR|ERVK	-37891.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.23	5.53	10.27	5.23	6.95	4.08	7.31	10.68	12.0	12.05	12.06	10.96
Merged-chr17-47795588-3	chr17	47795503	47795703	+	680.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9859.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	5.25	7.04	8.56	9.25	7.77	5.33	6.64	8.07	9.44	7.03	24.62	5.95
Merged-chr12-105026315-2	chr12	105026223	105026423	+	680.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4818.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	5.25	7.8	3.42	4.02	5.73	9.41	9.3	7.77	7.28	9.54	13.57	5.01
Merged-chr7-139950554-4	chr7	139950463	139950663	+	680.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6707.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	6.46	6.54	3.99	11.26	7.77	7.21	13.62	6.36	9.44	4.02	9.04	10.65
Merged-chr10-127580016-2	chr10	127579870	127580070	+	680.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	41178.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.65	1.51	8.56	5.23	9.0	8.78	3.65	7.43	8.06	5.52	7.54	9.4
Merged-chr19-34666303-2	chr19	34666264	34666464	+	680.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25475.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	12.52	4.53	2.28	1.61	3.68	4.39	1.0	3.7	8.06	10.04	0.5	0.94
Merged-chr5-5206236-2	chr5	5206124	5206324	+	680.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	59844.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.25	5.53	10.84	9.25	6.55	4.39	2.66	8.58	5.11	2.01	10.55	9.71
Merged-chr11-75472857-3	chr11	75472745	75472945	+	680.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4795.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	7.67	6.04	6.85	8.45	7.36	12.86	10.3	8.33	10.62	19.08	6.53	9.08
Merged-chr1-152796005-1	chr1	152795905	152796105	+	680.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4148.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	13.73	8.3	9.7	3.22	6.14	14.11	5.65	2.13	14.75	9.04	3.52	4.07
Merged-chr8-90869859-1	chr8	90869759	90869959	+	680.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	MIR|SINE|MIR	41024.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.65	7.8	5.7	3.62	13.5	18.5	7.64	13.46	16.33	10.54	10.05	5.33
Merged-chr11-6389761-3	chr11	6389626	6389826	+	680.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5399.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	9.29	7.04	4.56	4.42	6.55	5.02	4.32	4.88	8.65	7.53	7.03	7.52
Merged-chr4-136181540-1	chr4	136181440	136181640	+	680.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177733, intron 4 of 6)	intron (NM_177733, intron 4 of 6)	758.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	1.62	0.5	1.14	0.0	8.59	6.59	5.65	6.25	3.15	3.01	0.0	1.57
Merged-chr11-60333348-2	chr11	60333250	60333450	+	680.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	19555.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	5.25	8.55	15.4	9.25	5.32	3.76	4.32	8.3	11.01	1.51	19.6	4.7
Merged-chr18-4924217-2	chr18	4924100	4924300	+	680.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111714.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	10.09	1.51	5.7	7.64	4.91	5.02	10.63	12.03	3.54	0.0	7.03	5.01
Merged-chr15-101231216-2	chr15	101231108	101231308	+	680.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019518, intron 7 of 7)	intron (NM_019518, intron 7 of 7)	-6022.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	7.67	8.8	6.28	1.21	9.0	5.64	1.33	4.82	12.0	13.05	9.04	8.77
Merged-chrX-20798356-2	chrX	20798261	20798461	+	680.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50182.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	5.25	2.26	7.42	7.24	8.18	8.78	0.0	7.88	8.65	5.02	9.55	6.58
Merged-chr8-11473920-1	chr8	11473820	11474020	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4009.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	2.02	8.05	1.14	2.01	11.86	5.64	1.33	6.62	1.57	3.01	5.02	5.33
Merged-chr17-46342497-2	chr17	46342389	46342589	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14466.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	4.44	3.27	6.28	4.83	6.95	7.21	11.29	10.96	8.06	10.04	23.62	6.89
Merged-chr13-114970379-1	chr13	114970279	114970479	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033228, intron 24 of 28)	intron (NM_001033228, intron 24 of 28)	-38279.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	12.11	7.8	1.14	7.24	0.0	1.25	0.33	1.37	1.18	0.0	3.01	0.63
Merged-chr16-38392323-1	chr16	38392223	38392423	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30133.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	1.62	4.78	5.7	1.21	6.14	5.02	3.99	7.12	5.9	2.01	4.52	2.51
Merged-chr18-42781695-1	chr18	42781595	42781795	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	117811.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	2.42	0.0	5.7	2.41	4.5	5.64	4.65	10.96	4.92	0.0	8.04	2.51
Merged-chr4-155549024-1	chr4	155548924	155549124	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-13357.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	6.46	8.05	7.42	8.04	5.32	8.15	0.0	7.26	6.88	4.52	9.55	5.95
Merged-chr11-96278954-2	chr11	96278857	96279057	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2948.0	NM_010461	15416.0	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	7.27	5.53	2.28	3.22	4.5	6.9	1.99	5.1	13.37	9.04	19.6	3.76
Merged-chr7-89335509-3	chr7	89335467	89335667	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	3220.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.46	7.29	5.13	1.61	3.68	4.7	11.63	5.5	7.08	7.03	6.03	4.39
Merged-chr3-55293188-2	chr3	55293102	55293302	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	50838.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.23	4.78	4.56	4.02	6.95	6.27	7.64	7.37	10.03	16.07	8.54	7.21
Merged-chr12-3825170-1	chr12	3825070	3825270	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	UCON10|Unknown|Unknown	18010.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.04	2.77	5.13	2.41	7.77	6.9	1.33	4.91	12.78	4.52	2.01	3.76
Merged-chr11-49713593-1	chr11	49713493	49713693	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-871.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	2.42	3.77	1.14	2.01	10.23	4.08	6.64	5.58	5.31	6.03	5.02	7.52
Merged-chr14-105815442-1	chr14	105815342	105815542	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81377.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	5.25	3.52	5.7	5.23	2.86	5.02	7.31	7.29	3.54	2.01	2.51	1.25
Merged-chr15-28316046-2	chr15	28315949	28316149	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133365, intron 35 of 78)	intron (NM_133365, intron 35 of 78)	112283.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	9.69	9.56	2.28	5.23	2.45	4.39	4.32	5.75	5.11	2.51	4.52	7.52
Merged-chr6-124779772-2	chr6	124779663	124779863	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302555)	promoter-TSS (NM_001302555)	-36.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	8.88	3.27	4.56	4.83	9.82	5.96	2.66	4.43	5.9	9.04	6.53	6.89
Merged-chr1-43446991-3	chr1	43446891	43447091	+	680.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	1240.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	10.09	4.02	4.56	5.63	4.09	6.9	5.98	6.62	5.51	3.01	9.04	4.39
Merged-chr4-148115712-3	chr4	148115578	148115778	+	680.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027426, exon 2 of 7)	exon (NM_027426, exon 2 of 7)	15020.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	12.92	6.79	6.28	10.86	5.32	5.02	4.65	5.89	8.46	11.55	9.04	6.27
Merged-chr4-43469612-2	chr4	43469506	43469706	+	680.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	14103.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	1.62	3.77	2.28	8.04	8.18	7.53	10.3	4.54	12.19	4.52	20.6	6.58
Merged-chr13-23598126-1	chr13	23598026	23598226	+	680.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-12156.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	6.06	11.07	10.27	7.24	11.05	11.92	6.31	7.46	7.28	8.54	5.53	4.7
Merged-chr6-117905476-3	chr6	117905368	117905568	+	680.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	-1314.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	9.29	7.55	4.56	12.47	8.59	5.64	7.31	6.45	13.37	10.04	5.02	5.33
Merged-chr1-36591589-3	chr1	36591494	36591694	+	680.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	1738.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.04	7.55	9.7	5.23	3.68	8.47	2.66	6.11	8.65	8.03	12.56	5.64
Merged-chr16-43805837-1	chr16	43805737	43805937	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	43616.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	0.81	4.78	2.28	5.63	5.32	6.27	6.64	12.34	2.95	3.51	9.04	5.95
Merged-chr7-142284096-1	chr7	142283996	142284196	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-9733.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	10.09	3.02	7.42	6.03	6.95	10.35	8.3	6.11	7.08	6.53	11.05	4.07
Merged-chr14-51057542-1	chr14	51057442	51057642	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001011875)	promoter-TSS (NM_001011875)	-300.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	2.83	5.28	5.7	4.83	8.18	4.7	5.31	5.13	3.54	2.01	10.05	5.64
Merged-chr5-37971892-1	chr5	37971792	37971992	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67338.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.83	4.02	1.71	3.22	8.59	10.03	7.97	6.28	1.18	2.51	6.53	3.13
Merged-chr15-36540951-1	chr15	36540851	36541051	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025712, intron 4 of 13)	intron (NM_025712, intron 4 of 13)	14622.0	NM_001347022	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	1.62	1.26	5.13	6.44	6.14	5.33	3.65	8.44	2.95	0.5	7.54	2.51
Merged-chr6-112752711-3	chr6	112752627	112752827	+	680.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-56057.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	11.71	9.06	14.83	8.04	8.18	9.41	5.98	9.87	9.83	12.05	12.56	6.58
Merged-chr11-120547650-3	chr11	120547534	120547734	+	680.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033231, intron 1 of 4)	RLTR42|LTR|ERVK	2093.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	5.65	6.79	6.85	2.82	7.36	15.68	5.98	8.19	6.29	6.53	10.55	10.96
Merged-chr1-152521060-3	chr1	152521025	152521225	+	680.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	104092.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	12.92	6.29	3.99	11.66	4.09	4.08	5.65	4.91	8.06	1.51	9.55	6.27
Merged-chrX-16894629-2	chrX	16894524	16894724	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010883, exon 2 of 3)	5' UTR (NM_010883, exon 2 of 3)	17150.0	NM_010883	17986.0	Mm.5014	NM_010883	ENSMUSG00000040138	Ndp	ND|Ndph	Norrie disease (pseudoglioma) (human)	protein-coding	7.67	5.79	7.99	5.63	0.0	5.64	3.32	6.87	12.19	8.54	9.55	4.7
Merged-chr18-36510398-2	chr18	36510236	36510436	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	5469.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	4.85	6.29	3.42	4.83	3.27	12.23	3.99	2.64	5.51	6.03	2.01	3.13
Merged-chr1-43457136-2	chr1	43457041	43457241	+	680.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	11390.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.27	10.56	10.27	5.23	2.05	2.82	5.31	7.49	5.31	5.02	4.52	1.25
Merged-chr3-89319714-2	chr3	89319607	89319807	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010108, intron 1 of 4)	CpG	3172.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	7.27	2.77	12.55	2.41	6.55	4.08	3.65	7.93	10.62	10.54	9.55	5.33
Merged-chr14-75791224-2	chr14	75791132	75791332	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4195.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	5.65	2.26	2.28	6.03	6.95	6.59	5.98	5.36	6.88	13.05	7.54	9.08
Merged-chr7-102636857-3	chr7	102636764	102636964	+	680.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3384.0	NM_146325	258322.0	Mm.377435	NM_146325	ENSMUSG00000073971	Olfr554	MOR25-1	olfactory receptor 554	protein-coding	11.31	7.55	2.28	8.45	9.41	3.45	5.65	7.99	12.0	7.53	11.05	10.02
Merged-chr12-72408636-1	chr12	72408536	72408736	+	680.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153457, exon 1 of 9)	5' UTR (NM_153457, exon 1 of 9)	418.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	2.42	3.52	2.85	4.42	6.55	4.39	4.32	3.14	11.8	11.05	10.55	11.59
Merged-chr15-50920114-3	chr15	50920015	50920215	+	680.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-30074.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.44	6.29	14.83	6.44	4.5	7.53	17.61	12.98	11.6	5.02	16.08	5.33
Merged-chr8-88755356-3	chr8	88755243	88755443	+	680.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58315.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	4.85	5.28	8.56	7.24	4.5	4.08	4.65	10.99	9.05	2.01	13.06	4.07
Merged-chr5-72199075-2	chr5	72198957	72199157	+	680.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-4272.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.23	1.26	6.28	1.61	6.55	9.41	9.97	5.52	12.0	8.54	5.53	7.21
Merged-chr4-142071758-2	chr4	142071659	142071859	+	680.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-12539.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.23	2.52	4.56	6.84	6.95	5.33	1.0	5.1	9.64	3.51	13.57	8.14
Merged-chr10-122804064-2	chr10	122803978	122804178	+	680.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	124763.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	7.27	4.28	0.57	2.41	9.0	4.08	3.65	7.57	9.24	8.03	9.04	3.76
Merged-chr3-136329221-2	chr3	136329123	136329323	+	680.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3157.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	9.29	7.04	14.26	5.23	9.82	10.35	7.64	5.92	7.67	8.54	5.53	4.7
Merged-chr1-91414205-4	chr1	91414166	91414366	+	680.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360900)	promoter-TSS (NM_001360900)	-228.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	11.71	4.53	1.14	6.03	4.91	2.82	3.65	7.07	3.93	3.01	8.04	5.95
Merged-chr17-34206065-3	chr17	34205934	34206134	+	680.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011530, intron 3 of 11)	intron (NM_011530, intron 3 of 11)	1555.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	17.36	6.29	7.99	2.01	7.77	8.47	5.98	4.93	13.37	19.58	18.59	8.77
Merged-chr9-90262727-3	chr9	90262625	90262825	+	680.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	L1MA4|LINE|L1	8044.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	14.54	1.51	6.85	9.25	15.14	5.33	10.96	11.3	12.0	8.54	4.52	6.58
Merged-chr9-64829888-1	chr9	64829788	64829988	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	URR1B|DNA|hAT-Charlie	18877.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	10.5	7.29	7.99	5.63	11.45	10.03	4.65	5.78	15.34	11.55	9.04	11.9
Merged-chr6-90496447-2	chr6	90496348	90496548	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33872.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.04	1.51	9.13	10.46	0.82	9.09	1.99	5.66	1.57	5.02	6.03	1.88
Merged-chr1-85758178-1	chr1	85758078	85758278	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6230.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.81	0.5	0.57	0.0	0.82	2.2	3.65	1.07	0.39	0.0	3.52	1.88
Merged-chr3-75699303-1	chr3	75699203	75699403	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43572.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.4	1.01	1.14	4.02	0.41	0.63	5.65	7.74	1.97	2.51	9.55	0.0
Merged-chr18-57717295-2	chr18	57717182	57717382	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029290, intron 6 of 6)	MLTR14|LTR|ERV1	62713.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	5.25	2.26	10.27	8.45	7.77	3.14	2.66	8.52	8.65	3.51	6.03	4.07
Merged-chr2-83689596-2	chr2	83689496	83689696	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-34801.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	6.06	1.76	2.28	5.23	3.68	2.51	6.98	5.64	7.87	4.02	10.05	3.13
Merged-chr9-20727073-2	chr9	20726997	20727197	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	-94.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	4.85	5.53	4.56	5.63	6.95	7.84	8.3	8.3	6.69	9.54	9.55	5.95
Merged-chr4-102609832-1	chr4	102609732	102609932	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	19989.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.25	4.02	5.7	3.22	12.27	8.47	5.98	2.78	3.93	2.01	3.52	4.07
Merged-chr8-25974368-1	chr8	25974268	25974468	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 1 of 17)	RSINE1|SINE|B4	2376.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	2.42	0.0	3.42	0.0	4.5	0.31	2.33	4.12	8.85	6.03	4.02	6.58
Merged-chr1-184048104-1	chr1	184048004	184048204	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	13723.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	2.02	7.8	2.28	5.63	6.95	2.82	3.32	6.0	10.42	5.02	2.51	2.82
Merged-chr4-11145240-1	chr4	11145140	11145340	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11143.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	1.62	1.76	3.99	7.64	0.0	1.25	11.29	5.89	4.52	4.02	1.0	5.01
Merged-chr6-29433693-1	chr6	29433593	29433793	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001311074, exon 1 of 47)	exon (NM_001311074, exon 1 of 47)	437.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	4.04	7.29	2.85	8.04	2.05	4.7	1.33	5.41	2.36	3.01	1.51	6.89
Merged-chr2-73419494-2	chr2	73419383	73419583	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-33003.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	5.65	4.53	7.42	12.07	10.64	13.48	8.3	7.23	3.34	3.51	9.55	5.64
Merged-chr2-24365582-1	chr2	24365482	24365682	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2093.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.06	4.28	1.71	1.61	3.27	4.08	3.65	3.2	6.88	11.55	4.02	2.82
Merged-chr4-83327661-2	chr4	83327560	83327760	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3471.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.04	10.82	2.28	13.27	5.73	6.9	3.32	10.01	12.98	8.03	7.03	7.52
Merged-chr1-131050239-1	chr1	131050139	131050339	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30394.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.04	3.77	2.28	5.23	0.82	0.0	0.0	1.23	10.62	4.02	15.07	4.39
Merged-chr11-11553789-1	chr11	11553689	11553889	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	64523.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.42	2.77	1.71	3.62	1.64	3.76	6.98	12.67	5.7	11.55	7.03	1.57
Merged-chr1-6410164-1	chr1	6410064	6410264	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50833.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	2.42	3.27	5.7	9.65	7.36	2.2	5.98	8.64	4.13	3.51	2.51	8.46
Merged-chr6-24155086-1	chr6	24154986	24155186	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 1 of 14)	B4A|SINE|B4	13006.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	1.62	1.01	3.42	4.02	5.73	2.82	3.99	8.02	0.59	0.5	0.0	0.31
Merged-chr7-110616467-1	chr7	110616367	110616567	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-1547.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	6.46	5.79	7.99	6.03	5.32	5.02	8.97	1.93	7.47	4.02	9.55	5.01
Merged-chr12-34808344-3	chr12	34808242	34808442	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	108753.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.04	8.05	20.54	8.45	7.36	6.9	1.99	11.64	9.64	13.56	9.55	6.27
Merged-chr1-159334424-3	chr1	159334326	159334526	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 18 of 19)	RMER1B|Other|Other	-5881.0	NR_028518	100217414.0	Mm.450690	NR_028518	ENSMUSG00000089536	Scarna3a	MBI-114	small Cajal body-specific RNA 3A	ncRNA	10.9	3.52	14.26	8.04	2.45	6.9	1.33	7.18	10.23	7.03	6.03	6.27
Merged-chr9-13663418-1	chr9	13663318	13663518	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	958.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.83	6.04	5.13	6.84	4.91	6.59	4.32	5.02	1.77	1.51	12.56	4.07
Merged-chr4-134401597-2	chr4	134401490	134401690	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285872, intron 1 of 10)	(GGGTG)n|Simple_repeat|Simple_repeat	-1322.0	NM_001285874	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	5.25	4.02	1.71	0.8	3.68	3.14	7.31	4.21	5.7	13.05	11.56	2.82
Merged-chr10-125350548-1	chr10	125350448	125350648	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-21585.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.81	3.27	4.56	8.04	6.55	3.14	3.65	6.08	2.75	6.53	8.04	5.01
Merged-chr13-34223258-1	chr13	34223158	34223358	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	60294.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.21	4.02	3.42	1.21	0.0	1.57	5.31	6.64	1.97	0.0	0.0	4.07
Merged-chr13-94106086-1	chr13	94105986	94106186	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	48290.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.42	6.29	5.7	4.42	2.05	2.82	6.64	7.93	8.65	3.51	3.01	2.51
Merged-chr8-33629802-1	chr8	33629702	33629902	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178648, intron 4 of 7)	intron (NM_178648, intron 4 of 7)	12174.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	2.83	1.26	0.0	0.0	2.05	3.14	4.65	4.12	1.18	3.51	3.01	3.13
Merged-chr6-108127882-3	chr6	108127758	108127958	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 7 of 8)	intron (NM_145937, intron 7 of 8)	57725.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	6.06	5.28	10.84	7.64	2.45	8.78	12.29	14.55	6.88	3.01	8.54	8.77
Merged-chr8-108692443-2	chr8	108692341	108692541	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-22203.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.67	2.52	5.7	1.61	12.27	4.39	6.98	7.88	8.26	13.56	9.04	7.21
Merged-chr14-62277950-2	chr14	62277850	62278050	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173419, intron 1 of 1)	intron (NM_173419, intron 1 of 1)	15029.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.65	4.02	1.71	6.44	4.5	7.21	10.96	6.62	10.03	8.54	9.04	4.7
Merged-chr8-11163644-1	chr8	11163544	11163744	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149161.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	2.28	0.0	0.82	3.45	4.65	5.33	0.39	0.0	0.0	1.57
Merged-chr6-88903449-1	chr6	88903349	88903549	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1198.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	3.23	5.79	3.99	1.21	7.36	10.98	2.99	0.9	9.83	7.03	11.56	5.33
Merged-chr1-105622858-1	chr1	105622758	105622958	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013784, intron 14 of 30)	L1MA4A|LINE|L1	40818.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	1.62	4.02	1.14	2.41	1.64	3.14	6.31	6.7	2.36	1.51	3.52	3.13
Merged-chrX-159995951-1	chrX	159995851	159996051	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163085, intron 1 of 28)	intron (NM_001163085, intron 1 of 28)	7518.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	2.42	4.02	2.85	10.86	3.68	1.88	5.31	4.99	2.36	1.51	1.0	2.19
Merged-chr14-19778118-2	chr14	19778014	19778214	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008695, exon 5 of 21)	exon (NM_008695, exon 5 of 21)	26857.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.06	2.01	12.55	8.45	9.41	6.27	10.63	9.7	3.15	4.52	7.03	3.45
Merged-chr1-131136141-3	chr1	131136025	131136225	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2109.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	8.08	5.53	13.12	12.47	13.5	7.84	4.65	8.61	6.49	1.0	9.55	4.7
Merged-chr13-94941380-1	chr13	94941280	94941480	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34964.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	6.46	7.8	4.56	2.82	4.5	11.29	5.31	4.6	3.34	4.52	5.53	5.95
Merged-chr6-137412173-2	chr6	137412030	137412230	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	1409.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.83	1.51	1.14	4.02	3.68	5.02	2.66	4.54	5.11	5.52	9.04	5.33
Merged-chr6-112490942-1	chr6	112490842	112491042	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1117.0	NM_001081147	18430.0	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	7.27	5.28	2.28	9.65	8.18	5.33	7.31	7.82	5.9	8.03	4.52	2.82
Merged-chr3-88139505-1	chr3	88139405	88139605	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2867.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	2.42	3.77	0.57	0.4	5.32	9.09	1.99	5.72	5.51	9.04	7.03	9.4
Merged-chr1-84251017-3	chr1	84250919	84251119	+	679.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-32058.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	9.29	8.55	9.13	15.69	24.14	13.48	9.97	14.94	7.87	5.52	6.53	7.21
Merged-chr1-144265832-2	chr1	144265725	144265925	+	679.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16721.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.27	5.28	5.7	4.02	9.82	6.59	1.99	7.74	9.05	10.54	11.05	3.13
Merged-chr3-127323041-2	chr3	127322947	127323147	+	679.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	86011.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	8.08	10.82	3.42	7.64	12.68	8.78	5.98	10.49	7.08	12.55	11.05	7.83
Merged-chr17-24649741-2	chr17	24649683	24649883	+	679.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023055, intron 1 of 6)	intron (NM_023055, intron 1 of 6)	522.0	NM_001357796	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	5.25	8.55	1.71	1.21	4.09	12.86	9.97	8.83	7.08	13.05	7.03	6.27
Merged-chr4-155163454-2	chr4	155163325	155163525	+	679.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59110.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.65	7.29	2.85	6.44	9.0	8.47	4.32	6.2	5.7	8.03	8.54	7.21
Merged-chr12-109525774-2	chr12	109525672	109525872	+	679.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15224.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	8.88	3.02	3.42	3.22	6.55	9.72	7.64	5.24	13.96	7.53	16.08	2.82
Merged-chr16-56771566-2	chr16	56771467	56771667	+	679.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172825, intron 4 of 15)	intron (NM_172825, intron 4 of 15)	24291.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	7.67	5.28	2.85	5.63	9.0	10.98	3.32	5.86	5.9	9.54	12.56	9.08
Merged-chr4-11110388-3	chr4	11110314	11110514	+	679.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13544.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	3.63	6.04	0.57	8.45	6.14	4.39	5.98	7.65	7.87	10.54	7.03	6.27
Merged-chr4-154946514-3	chr4	154946402	154946602	+	679.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14421.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	4.04	7.04	9.7	11.66	6.14	3.45	9.3	6.45	7.28	12.55	13.06	5.01
Merged-chr3-154572559-3	chr3	154572463	154572663	+	679.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24148.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	5.25	10.82	2.28	8.85	6.14	5.02	5.65	9.36	10.82	4.52	12.06	3.13
Merged-chr9-83546062-2	chr9	83545952	83546152	+	679.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-2286.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.81	2.77	1.71	2.82	5.32	3.45	11.29	5.19	11.8	10.04	11.56	6.89
Merged-chr7-74976897-2	chr7	74976801	74977001	+	679.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53310.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	8.88	5.79	4.56	15.28	4.91	6.27	2.66	9.81	13.57	8.54	12.06	9.71
Merged-chr10-127165887-2	chr10	127165756	127165956	+	679.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001244618)	promoter-TSS (NM_001244618)	25.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	6.86	3.27	6.28	10.46	3.68	4.08	6.64	7.43	6.29	5.02	7.03	6.27
Merged-chr4-155489404-3	chr4	155489305	155489505	+	679.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1956.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	2.42	5.53	11.41	8.85	5.32	5.96	5.31	5.52	12.78	10.54	12.06	8.46
Merged-chr15-80979592-1	chr15	80979492	80979692	+	679.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	1827.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.25	1.01	6.85	2.01	6.55	7.84	1.33	6.9	3.54	11.05	1.51	8.77
Merged-chr18-33719378-1	chr18	33719278	33719478	+	679.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75514.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	7.27	2.26	5.7	3.62	0.0	0.0	0.0	0.81	10.03	7.03	13.06	6.27
Merged-chr6-38874198-3	chr6	38874088	38874288	+	679.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	2002.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.06	5.79	4.56	0.0	7.77	3.14	0.33	6.84	9.83	7.53	3.01	7.21
Merged-chr2-166773798-1	chr2	166773698	166773898	+	679.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19969.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	3.63	8.3	14.26	10.05	4.5	3.76	9.3	2.21	4.92	2.01	2.51	6.58
Merged-chr4-155892760-1	chr4	155892660	155892860	+	679.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	885.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	3.63	5.03	9.13	5.63	6.95	4.7	3.99	5.02	7.87	6.53	11.56	3.45
Merged-chr8-46627572-2	chr8	46627475	46627675	+	679.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10284.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.44	7.04	6.85	4.02	9.41	7.21	2.66	11.02	2.56	6.03	9.55	3.13
Merged-chr13-89885347-2	chr13	89885248	89885448	+	679.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	B3|SINE|B2	-142836.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.4	0.5	2.85	6.44	7.36	2.51	8.97	13.57	8.06	5.02	9.04	3.76
Merged-chr14-103102583-2	chr14	103102505	103102705	+	679.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3039.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	6.46	8.8	3.42	6.44	7.36	7.21	2.33	8.55	6.1	4.02	9.55	7.83
Merged-chr12-54637208-2	chr12	54637095	54637295	+	679.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8817.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	3.23	3.27	3.42	2.82	6.55	7.21	3.32	9.0	11.8	8.54	16.08	5.95
Merged-chr3-109480782-3	chr3	109480695	109480895	+	679.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-93212.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	10.9	5.28	5.7	10.05	10.64	6.9	5.31	9.81	11.21	17.07	14.57	7.52
Merged-chr4-43498843-3	chr4	43498730	43498930	+	679.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013377, intron 6 of 11)	intron (NM_001013377, intron 6 of 11)	5465.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	4.85	6.79	5.13	6.44	5.73	5.02	8.3	5.58	2.56	9.04	3.01	3.13
Merged-chr2-103968469-2	chr2	103968380	103968580	+	679.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	ID_B1|SINE|B4	-1077.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.85	9.31	22.25	5.23	6.55	4.08	2.66	4.65	10.42	12.05	14.07	7.52
Merged-chr2-127506244-2	chr2	127506141	127506341	+	679.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	15151.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	4.04	4.78	13.12	8.04	4.5	8.15	8.64	6.84	11.21	11.05	3.01	9.71
Merged-chr2-84458765-3	chr2	84458666	84458866	+	679.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355271, intron 2 of 8)	Lx3B|LINE|L1	15408.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	12.11	3.02	11.41	10.86	8.18	11.92	14.28	4.09	10.82	5.02	15.07	11.28
Merged-chr17-6098079-3	chr17	6097979	6098179	+	679.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8751.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	10.09	6.79	4.56	8.85	6.95	8.47	5.31	7.88	10.23	8.54	12.06	6.89
Merged-chr11-87690378-3	chr11	87690276	87690476	+	679.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	-9148.0	NR_045139	68690.0	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA	9.69	7.8	13.69	14.08	7.36	10.35	6.64	7.32	10.03	15.06	5.53	5.64
Merged-chr13-55728088-2	chr13	55727993	55728193	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028281, intron 1 of 3)	intron (NM_028281, intron 1 of 3)	725.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	5.65	12.07	10.84	8.04	4.91	8.47	5.31	5.89	8.06	9.04	8.04	4.39
Merged-chr2-5698833-2	chr2	5698738	5698938	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	15924.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.04	1.51	10.27	9.65	11.05	0.63	3.99	6.95	3.93	3.51	6.53	3.76
Merged-chr8-122273304-2	chr8	122273202	122273402	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8839.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.65	1.76	0.57	4.42	6.95	4.39	5.98	4.54	7.08	8.03	11.05	4.07
Merged-chr1-127261299-1	chr1	127261199	127261399	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	RLTR28|LTR|ERVL	56313.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.04	4.78	2.28	7.24	5.73	4.08	3.32	5.89	10.62	5.02	4.52	5.64
Merged-chr15-96666911-3	chr15	96666806	96667006	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-23993.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.65	6.79	6.85	6.84	12.68	10.03	4.98	6.93	10.23	10.54	16.08	5.01
Merged-chr10-8913040-2	chr10	8912920	8913120	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26950.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.67	5.28	1.14	5.63	4.09	5.02	4.98	8.8	5.31	10.04	7.03	9.4
Merged-chr1-180863812-1	chr1	180863712	180863912	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145943, intron 6 of 6)	intron (NM_145943, intron 6 of 6)	12661.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	5.25	4.53	1.71	4.83	7.77	9.09	3.32	6.17	12.0	10.04	1.51	5.33
Merged-chr15-58822526-1	chr15	58822426	58822626	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	901.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	2.83	6.04	3.99	6.44	4.91	8.15	4.98	5.05	3.74	7.03	2.01	5.01
Merged-chr11-63138914-3	chr11	63138827	63139027	+	679.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	6124.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.65	10.31	7.42	8.45	9.0	10.66	6.64	15.56	13.96	7.53	11.05	7.83
Merged-chr12-100849549-2	chr12	100849450	100849650	+	679.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 7 of 12)	intron (NM_145448, intron 7 of 12)	49974.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	6.06	4.02	3.42	7.64	13.09	5.96	2.66	7.68	5.51	9.04	8.04	11.28
Merged-chr1-34602556-2	chr1	34602463	34602663	+	679.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22870.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	13.73	7.55	11.98	9.65	3.27	1.88	3.65	3.79	10.62	14.06	14.57	3.13
Merged-chr1-125431008-2	chr1	125430905	125431105	+	679.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	RMER1A|Other|Other	4722.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	7.27	13.83	6.28	8.45	6.95	9.09	3.99	2.33	11.01	14.56	14.57	6.27
Merged-chr8-46835792-2	chr8	46835709	46835909	+	679.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	96064.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.04	3.27	2.85	2.01	4.5	2.51	6.98	6.34	5.7	10.04	14.07	9.08
Merged-chr14-64753059-2	chr14	64752943	64753143	+	679.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	100512.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.25	4.28	6.28	10.46	6.95	6.27	6.64	9.22	9.83	7.03	5.53	5.01
Merged-chr13-55067379-3	chr13	55067287	55067487	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121592, intron 6 of 13)	L1M2|LINE|L1	27019.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	3.23	9.31	20.54	15.28	7.36	7.84	4.65	5.38	10.03	9.04	11.05	9.71
Merged-chr14-61690355-1	chr14	61690255	61690455	+	679.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7982.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.27	10.06	4.56	2.41	9.41	19.44	7.64	0.98	6.29	4.52	8.04	2.19
Merged-chr8-46850743-1	chr8	46850643	46850843	+	679.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110998.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.65	3.77	11.98	3.22	7.36	6.27	6.64	6.81	4.13	7.03	6.03	9.4
Merged-chr3-105802676-3	chr3	105802587	105802787	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.85	2.01	11.98	10.46	7.77	8.47	8.3	7.4	16.13	15.06	11.56	8.14
Merged-chr7-81921827-3	chr7	81921747	81921947	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013886, intron 1 of 5)	intron (NM_013886, intron 1 of 5)	12612.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	9.29	3.52	5.7	21.72	11.45	5.96	6.31	7.74	10.03	9.54	11.56	6.58
Merged-chr3-127457960-1	chr3	127457860	127458060	+	679.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	B2_Mm2|SINE|B2	41155.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.0	0.0	0.8	0.0	0.0	0.0	0.56	15.54	11.55	11.56	5.01
Merged-chr9-13301323-3	chr9	13301227	13301427	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54371.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	4.44	9.31	14.83	1.61	8.59	9.09	12.95	8.44	9.44	11.55	9.55	4.39
Merged-chr16-32194961-3	chr16	32194848	32195048	+	679.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15148.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	20.59	14.34	9.13	13.67	17.18	20.07	10.63	7.85	7.67	14.06	8.04	6.27
Merged-chr14-25467834-3	chr14	25467718	25467918	+	679.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	8633.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.46	8.05	7.99	5.23	22.09	15.37	9.3	14.8	11.01	3.51	10.05	5.01
Merged-chr8-70383523-2	chr8	70383412	70383612	+	679.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001004062, exon 14 of 14)	3' UTR (NM_001004062, exon 14 of 14)	9964.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	6.46	8.3	2.28	1.21	7.36	11.29	2.66	5.38	12.59	8.03	17.08	7.83
Merged-chr5-138659127-2	chr5	138659024	138659224	+	679.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36265.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	11.71	5.53	3.42	9.25	7.77	11.29	2.66	5.92	7.67	12.05	12.56	12.84
Merged-chr1-138297957-2	chr1	138297838	138298038	+	679.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24200.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.81	2.26	8.56	1.61	8.59	8.47	7.31	5.66	9.24	6.53	13.57	8.46
Merged-chrX-77413292-2	chrX	77413193	77413393	+	679.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97934.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	4.04	5.03	3.99	3.62	6.95	1.88	5.31	7.12	10.62	9.04	18.09	9.08
Merged-chr17-36947258-3	chr17	36947119	36947319	+	679.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001099632, exon 4 of 4)	exon (NM_001099632, exon 4 of 4)	4168.0	NM_001099632	386454.0	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	10.9	4.28	3.42	5.23	9.0	11.92	6.31	10.63	5.7	12.05	11.05	9.08
Merged-chr19-21037226-1	chr19	21037126	21037326	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67484.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	9.29	8.3	5.13	8.85	11.05	6.27	18.6	10.77	11.8	8.54	13.57	9.08
Merged-chr19-34228618-1	chr19	34228518	34228718	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360719, intron 3 of 10)	intron (NM_001360719, intron 3 of 10)	-4007.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.63	3.02	9.7	8.45	4.5	1.57	5.31	5.89	0.0	0.0	0.5	0.0
Merged-chr6-87670353-1	chr6	87670253	87670453	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024251, intron 1 of 9)	intron (NM_024251, intron 1 of 9)	1815.0	NM_024251	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	4.85	0.5	1.14	4.83	4.5	5.33	1.33	3.56	9.44	13.05	3.01	8.14
Merged-chr2-35231223-1	chr2	35231123	35231323	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25136.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.85	2.77	6.85	5.63	11.05	1.88	8.64	4.63	3.93	9.04	3.52	3.13
Merged-chr9-110841086-1	chr9	110840986	110841186	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153172, exon 6 of 6)	3' UTR (NM_153172, exon 6 of 6)	-3420.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	4.44	2.77	14.83	2.41	2.05	6.9	6.31	4.4	7.87	5.02	4.52	4.39
Merged-chr15-67187500-2	chr15	67187407	67187607	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10625.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.06	3.02	7.42	7.64	6.95	3.14	7.97	7.26	8.06	9.04	3.01	8.46
Merged-chr4-33243410-1	chr4	33243310	33243510	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	5377.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	14.54	7.29	5.7	8.04	6.95	6.27	7.31	4.32	12.39	6.03	6.53	6.27
Merged-chr15-84614385-1	chr15	84614285	84614485	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-48821.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	4.85	9.56	9.7	5.23	2.45	2.82	3.32	3.67	5.31	2.01	4.02	6.27
Merged-chr6-119449182-2	chr6	119449081	119449281	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	205.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	6.06	2.52	4.56	4.42	4.09	6.59	6.98	6.45	8.46	7.03	10.05	5.64
Merged-chr12-56301845-1	chr12	56301745	56301945	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44049.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	5.25	2.26	11.98	8.45	6.95	2.2	5.31	4.99	7.67	3.51	8.54	2.51
Merged-chr19-55928992-1	chr19	55928892	55929092	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	33671.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.04	3.52	2.28	0.8	1.23	0.94	8.97	4.99	3.54	2.01	4.02	0.63
Merged-chr6-134253837-1	chr6	134253737	134253937	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-142492.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.67	5.03	2.28	2.01	3.27	5.96	2.99	5.13	4.52	2.51	3.52	3.76
Merged-chr2-73427089-1	chr2	73426989	73427189	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26800.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.65	1.51	1.71	5.63	4.09	2.2	1.0	3.42	4.92	3.01	11.05	8.14
Merged-chr14-76479975-1	chr14	76479875	76480075	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-8461.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	4.85	3.52	2.28	2.41	6.95	7.84	1.33	7.04	4.72	0.0	2.51	4.39
Merged-chr2-11552489-1	chr2	11552389	11552589	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1440.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.63	1.51	4.56	1.61	4.91	2.2	1.66	2.19	8.85	3.01	1.51	5.64
Merged-chr9-35043199-1	chr9	35043099	35043299	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER47B|DNA|TcMar-Tigger	-73529.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.4	0.75	0.57	3.62	1.64	0.63	1.33	0.9	4.33	2.01	4.52	4.07
Merged-chr11-82036048-1	chr11	82035948	82036148	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011333, intron 1 of 2)	intron (NM_011333, intron 1 of 2)	471.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.85	5.79	4.56	7.24	6.95	9.09	0.66	4.15	10.82	10.04	10.55	4.39
Merged-chr2-129700392-1	chr2	129700292	129700492	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018863)	promoter-TSS (NM_018863)	-454.0	NM_018863	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	5.65	3.02	7.99	4.83	3.27	7.53	1.0	5.36	3.15	6.03	3.52	5.95
Merged-chr18-38212336-1	chr18	38212236	38212436	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2574.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	7.27	4.53	9.7	3.22	2.45	8.47	1.66	5.05	4.33	4.02	12.06	5.01
Merged-chr15-10921098-2	chr15	10921016	10921216	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31216.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	7.67	6.04	1.14	18.1	9.0	7.53	5.65	8.61	5.9	4.52	10.55	4.7
Merged-chr11-43634220-1	chr11	43634120	43634320	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32658.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	9.69	6.04	1.14	5.23	5.73	10.66	7.97	5.24	5.31	7.03	8.54	4.07
Merged-chrX-134540938-1	chrX	134540838	134541038	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013898, intron 1 of 1)	intron (NM_013898, intron 1 of 1)	732.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	6.46	6.79	0.0	4.42	9.82	10.03	6.64	3.76	9.64	6.53	3.52	1.88
Merged-chr12-57197206-2	chr12	57197126	57197326	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172577, exon 1 of 10)	5' UTR (NM_172577, exon 1 of 10)	246.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	7.67	5.53	0.0	2.82	0.0	6.27	9.3	6.36	4.13	5.02	3.52	6.89
Merged-chr2-139591454-1	chr2	139591354	139591554	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356507, intron 8 of 11)	intron (NM_001356507, intron 8 of 11)	-86724.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	2.83	3.52	0.57	8.04	4.5	6.9	1.99	6.48	5.11	4.52	11.56	3.76
Merged-chr4-149049051-1	chr4	149048951	149049151	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50761.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	3.23	6.29	1.14	4.83	7.36	4.08	4.32	6.34	6.1	2.01	4.02	2.51
Merged-chr3-84356108-1	chr3	84356008	84356208	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040752, intron 3 of 3)	MER20|DNA|hAT-Charlie	23813.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	4.85	2.01	7.42	2.01	2.05	0.0	4.98	5.52	2.75	5.52	8.04	2.19
Merged-chrX-152322968-1	chrX	152322868	152323068	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040270, intron 2 of 2)	RMER12C|LTR|ERVK	4525.0	NR_040269	72997.0	Mm.254833	NR_040269	ENSMUSG00000087403	Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA	2.42	5.53	6.28	4.83	15.55	10.03	4.98	5.61	3.34	3.51	2.01	2.19
Merged-chr3-30599818-2	chr3	30599712	30599912	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	58.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	6.06	9.56	3.42	4.42	8.59	5.33	4.98	6.84	3.93	4.02	4.02	6.27
Merged-chr8-84417979-1	chr8	84417879	84418079	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	2615.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.02	4.53	3.99	0.0	0.82	8.15	2.33	5.41	0.79	0.0	0.0	0.0
Merged-chr10-22402646-1	chr10	22402546	22402746	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028580)	promoter-TSS (NR_028580)	-167.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.64	3.01	11.56	9.4
Merged-chr1-170962486-1	chr1	170962386	170962586	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010187, intron 5 of 6)	intron (NM_010187, intron 5 of 6)	13585.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.4	0.25	1.14	0.0	3.27	5.33	5.31	5.97	1.97	3.51	6.03	3.13
Merged-chr4-102588514-1	chr4	102588414	102588614	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	956.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.02	3.27	7.42	2.41	11.86	1.25	1.99	4.63	1.77	3.01	6.53	2.82
Merged-chr11-52346454-1	chr11	52346354	52346554	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14408.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	2.83	4.28	4.56	0.0	10.64	4.7	2.33	2.61	10.23	9.54	7.54	8.46
Merged-chr15-53730234-1	chr15	53730134	53730334	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-115955.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	3.23	4.02	3.99	5.63	0.0	3.45	7.97	4.93	0.98	6.03	3.52	3.45
Merged-chr4-123548314-1	chr4	123548214	123548414	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-68106.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	2.02	4.02	4.56	12.07	7.36	7.84	3.99	7.26	7.67	4.02	3.52	2.19
Merged-chr6-54933525-1	chr6	54933425	54933625	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171007, intron 9 of 11)	intron (NM_001171007, intron 9 of 11)	38136.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.02	1.76	3.42	3.22	2.86	6.59	3.32	6.5	3.93	8.54	5.02	8.77
Merged-chr15-33340797-1	chr15	33340697	33340897	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 4 of 7)	MLT1B|LTR|ERVL-MaLR	65142.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	4.85	3.27	3.42	5.23	2.45	2.2	3.65	6.84	4.72	9.04	7.54	4.07
Merged-chr16-35870740-1	chr16	35870640	35870840	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	642.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.25	10.82	3.42	4.02	6.55	9.09	2.66	3.76	10.62	9.04	3.01	3.13
Merged-chr8-41283846-2	chr8	41283748	41283948	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 16 of 37)	intron (NM_023662, intron 16 of 37)	44089.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	1.62	1.51	2.28	0.8	7.36	4.08	1.33	7.51	12.98	7.03	11.05	4.07
Merged-chr6-116570071-1	chr6	116569971	116570171	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12873.0	NM_146446	258438.0	Mm.357743	NM_146446	ENSMUSG00000050654	Olfr215	MOR119-2	olfactory receptor 215	protein-coding	3.23	3.02	3.42	8.45	6.14	10.03	1.33	5.83	10.42	2.01	4.52	5.64
Merged-chr15-59651457-1	chr15	59651357	59651557	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	2803.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.25	2.52	2.85	2.41	5.73	10.03	5.65	4.71	4.72	3.01	5.02	4.07
Merged-chr4-123566441-1	chr4	123566341	123566541	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-49979.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	3.63	2.52	6.85	2.41	4.09	6.27	1.99	5.64	5.9	7.03	8.04	4.07
Merged-chr10-122748579-1	chr10	122748479	122748679	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	69264.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	1.26	11.98	5.63	2.45	2.51	4.32	5.86	10.03	5.02	6.53	10.02
Merged-chr13-6922456-1	chr13	6922356	6922556	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-273685.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	2.83	1.51	2.28	3.22	8.18	5.02	4.32	6.67	3.15	7.03	6.03	0.63
Merged-chr15-96770585-1	chr15	96770485	96770685	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-70857.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.23	4.53	3.42	4.02	9.0	3.45	5.65	4.96	7.28	2.01	6.03	1.57
Merged-chr9-121354928-1	chr9	121354828	121355028	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-12030.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.44	3.02	0.0	3.22	4.91	7.53	5.31	5.92	3.54	5.02	3.52	2.19
Merged-chr11-88145934-1	chr11	88145834	88146034	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-23631.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	3.23	3.02	17.11	2.82	3.27	9.41	1.33	7.01	5.31	8.03	10.05	7.52
Merged-chr1-195015138-1	chr1	195015038	195015238	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2261.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	2.02	2.52	0.57	7.64	2.05	0.63	5.98	0.53	2.56	3.51	0.5	3.13
Merged-chr3-51719619-3	chr3	51719520	51719720	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58441.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	12.52	9.56	8.56	8.04	6.55	7.84	3.32	11.55	8.65	7.53	9.55	5.64
Merged-chr5-142960361-1	chr5	142960261	142960461	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007984)	promoter-TSS (NM_007984)	6.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.25	3.27	3.42	6.03	6.95	4.08	5.65	8.19	6.88	6.03	6.53	5.01
Merged-chr7-24885108-1	chr7	24885008	24885208	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360115, intron 1 of 5)	intron (NM_001360115, intron 1 of 5)	195.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	7.67	18.36	10.27	7.24	11.45	12.54	12.62	3.98	12.78	11.55	24.12	12.22
Merged-chr9-51765225-1	chr9	51765125	51765325	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175535)	promoter-TSS (NM_175535)	-127.0	NM_175535	244867.0	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	4.85	5.53	1.71	3.62	2.86	2.51	14.95	7.71	0.59	2.01	4.02	0.0
Merged-chr14-98870073-1	chr14	98869973	98870173	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176063.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	1.21	2.52	2.28	1.21	2.45	0.31	3.99	4.85	2.56	4.02	0.0	2.82
Merged-chr10-62865341-1	chr10	62865241	62865441	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21983.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	2.02	1.51	3.99	4.42	4.5	8.47	3.32	4.88	3.34	9.54	3.01	3.76
Merged-chr19-5925544-1	chr19	5925444	5925644	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-728.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	8.88	1.26	5.7	6.84	4.09	8.47	5.98	2.8	10.62	9.04	3.52	2.82
Merged-chr11-45699496-2	chr11	45699403	45699603	+	678.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-108580.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	12.11	6.54	5.7	9.65	6.14	6.27	6.98	7.04	6.29	11.55	10.55	6.27
Merged-chr7-145243245-3	chr7	145243187	145243387	+	678.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-35168.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	9.69	4.02	2.28	0.8	12.68	9.41	1.0	7.21	12.0	9.04	8.54	4.07
Merged-chr8-69985320-3	chr8	69985211	69985411	+	678.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-10928.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.48	11.82	5.13	5.63	7.36	5.64	5.31	5.41	7.67	10.54	14.07	2.82
Merged-chr2-35499157-2	chr2	35499074	35499274	+	678.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37725.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.25	6.29	7.99	5.63	6.95	4.08	5.98	9.59	7.28	13.56	18.59	6.27
Merged-chr4-150239043-3	chr4	150238944	150239144	+	678.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1720.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	2.83	8.8	3.42	7.64	5.73	3.76	7.64	10.88	10.03	4.02	9.04	8.77
Merged-chr13-60603495-3	chr13	60603401	60603601	+	678.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	1290.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.23	2.77	9.7	16.49	9.82	1.88	28.9	21.98	2.95	6.03	15.07	8.14
Merged-chr4-55342003-2	chr4	55341912	55342112	+	678.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-8030.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	6.86	7.04	10.27	6.84	10.23	6.27	3.99	8.24	3.93	3.51	8.54	10.02
Merged-chr2-167953137-3	chr2	167953039	167953239	+	678.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	20812.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.48	6.79	9.7	12.07	2.45	5.02	7.31	13.82	8.26	7.53	9.04	6.27
Merged-chr11-72206639-3	chr11	72206535	72206735	+	678.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	847.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	9.69	4.53	15.97	2.41	11.86	4.08	7.64	4.88	14.95	11.05	11.56	5.95
Merged-chr5-121813015-3	chr5	121812962	121813162	+	678.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359153, intron 22 of 23)	intron (NM_001359153, intron 22 of 23)	6211.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	8.48	2.52	6.85	7.24	9.41	6.9	12.62	5.92	3.54	6.53	4.52	3.45
Merged-chr6-13609488-3	chr6	13609378	13609578	+	678.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	12.92	2.77	13.69	4.83	5.32	6.27	2.99	8.05	12.98	10.04	9.04	9.4
Merged-chr2-61594982-2	chr2	61594892	61595092	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149323, intron 2 of 9)	MTD|LTR|ERVL-MaLR	1895.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.86	2.01	6.28	6.44	1.64	8.15	2.66	4.35	12.98	10.54	10.55	8.14
Merged-chr11-111327097-2	chr11	111327004	111327204	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	260940.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.86	4.28	3.42	11.66	5.73	3.76	6.31	6.48	5.11	8.54	11.56	6.58
Merged-chrX-169299779-2	chrX	169299683	169299883	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109847, intron 12 of 14)	intron (NR_109847, intron 12 of 14)	20589.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	5.65	5.79	6.85	5.63	5.73	5.96	2.66	6.76	11.01	5.52	19.09	1.88
Merged-chr11-57517179-2	chr11	57517065	57517265	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026342, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	1479.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	8.88	6.29	4.56	3.22	2.45	3.76	2.99	6.9	8.46	4.52	9.55	4.7
Merged-chr18-67612431-2	chr18	67612347	67612547	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28908.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	4.85	4.78	4.56	4.02	2.86	6.59	4.32	7.09	10.42	5.52	14.07	3.45
Merged-chr9-119430530-2	chr9	119430419	119430619	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007397, intron 6 of 9)	intron (NM_007397, intron 6 of 9)	-14441.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	7.67	3.02	11.98	1.61	6.14	1.25	5.31	4.49	14.55	2.01	17.08	7.21
Merged-chr4-133854871-2	chr4	133854779	133854979	+	678.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	19852.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.08	8.05	7.42	6.84	7.36	12.54	5.31	8.8	2.16	4.52	2.01	1.25
Merged-chr5-31908180-2	chr5	31908077	31908277	+	678.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	210127.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.65	7.29	10.27	13.27	9.0	8.15	11.29	9.14	7.67	13.56	10.55	5.64
Merged-chr14-57378309-1	chr14	57378209	57378409	+	678.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	20174.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.04	2.77	5.13	1.61	8.59	4.7	3.99	6.95	2.56	4.02	5.53	2.82
Merged-chr10-42637429-3	chr10	42637321	42637521	+	678.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41495.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	6.46	8.05	14.26	4.02	9.82	6.27	2.99	8.97	15.34	8.03	6.03	9.71
Merged-chr14-61648355-3	chr14	61648244	61648444	+	678.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	CpG	-16234.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	4.04	12.32	11.41	4.02	8.18	6.59	6.31	5.64	8.85	7.53	11.56	6.58
Merged-chr9-31082488-1	chr9	31082388	31082588	+	678.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49311.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	3.23	6.29	6.28	3.22	1.23	5.33	2.33	2.64	9.64	5.52	13.06	7.52
Merged-chr19-17364984-1	chr19	17364884	17365084	+	678.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	7860.0	NM_010265	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.23	6.04	3.42	5.63	7.36	8.15	5.31	4.37	4.52	2.51	10.05	4.7
Merged-chr4-132639553-2	chr4	132639441	132639641	+	678.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010166, intron 1 of 17)	intron (NM_010166, intron 1 of 17)	495.0	NM_010166	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.42	2.26	2.85	0.0	11.05	2.2	6.31	7.12	9.44	4.02	7.03	8.14
Merged-chr10-119152723-2	chr10	119152618	119152818	+	678.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59813.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	4.44	2.77	4.56	2.82	9.41	9.72	6.98	10.04	5.31	2.51	10.05	5.64
Merged-chr3-90514947-3	chr3	90514945	90515145	+	678.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	610.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	6.46	5.79	2.28	5.23	5.32	2.82	7.97	5.07	9.64	7.53	5.53	3.76
Merged-chr4-62667408-2	chr4	62667323	62667523	+	678.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6551.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.25	5.79	6.85	1.61	6.55	5.02	5.65	4.12	11.8	12.05	18.09	12.84
Merged-chr8-125733640-3	chr8	125733575	125733775	+	678.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	-528.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	8.08	7.29	11.98	4.83	7.77	6.27	5.31	9.67	7.67	4.52	17.59	2.19
Merged-chr9-99200542-1	chr9	99200442	99200642	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	36697.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	8.88	5.28	2.85	2.41	7.36	3.76	5.98	6.25	7.87	3.51	3.01	2.19
Merged-chr2-159555076-1	chr2	159554976	159555176	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-392265.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	2.02	0.0	1.14	3.22	6.55	3.14	5.31	5.41	6.88	4.02	9.55	3.45
Merged-chr17-88102771-2	chr17	88102656	88102856	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22756.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	6.46	5.03	3.99	8.85	7.36	6.59	5.65	8.16	8.06	4.52	11.05	5.33
Merged-chr1-89942223-1	chr1	89942123	89942323	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11047.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	6.06	4.78	3.42	10.46	9.82	5.33	12.95	7.04	3.93	1.0	4.02	5.64
Merged-chr4-43735654-1	chr4	43735554	43735754	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	5620.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	1.62	1.26	2.28	8.85	3.27	4.7	6.64	5.58	3.54	2.01	1.0	5.64
Merged-chrX-96158068-1	chrX	96157968	96158168	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 7 of 12)	intron (NM_010833, intron 7 of 12)	62023.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	6.86	2.52	5.7	1.61	7.77	5.33	1.0	6.08	5.11	2.51	6.53	2.82
Merged-chr19-29372273-1	chr19	29372173	29372373	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	4835.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.81	2.01	4.56	0.0	5.73	7.53	1.0	0.56	7.28	2.01	7.54	3.45
Merged-chr3-145026924-1	chr3	145026824	145027024	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017474, intron 3 of 13)	intron (NM_017474, intron 3 of 13)	5852.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	9.69	5.53	2.28	2.01	8.59	7.53	6.98	7.37	5.11	4.02	5.02	3.76
Merged-chr2-84557198-2	chr2	84557133	84557333	+	678.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50360.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.25	2.52	1.14	6.44	3.27	3.76	7.64	3.31	5.7	4.52	0.5	1.88
Merged-chr10-111389105-2	chr10	111389020	111389220	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84107.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.04	3.02	12.55	0.8	10.64	4.08	2.99	5.61	9.05	10.04	7.03	7.52
Merged-chrX-152003090-2	chrX	152002983	152003183	+	678.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016763, intron 2 of 5)	intron (NM_016763, intron 2 of 5)	1187.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	10.09	5.79	4.56	1.61	6.95	7.84	10.63	7.29	7.08	12.05	3.52	3.13
Merged-chr1-105982898-2	chr1	105982828	105983028	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	7354.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	2.83	9.06	6.85	5.23	4.5	6.59	4.98	4.18	5.11	5.02	4.02	6.89
Merged-chr7-43397592-2	chr7	43397481	43397681	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10699.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	6.46	4.28	3.42	6.03	7.36	6.9	4.65	10.46	8.06	6.03	5.02	6.89
Merged-chr15-103368012-1	chr15	103367912	103368112	+	678.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1221.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.86	3.27	2.85	4.83	1.64	0.31	0.0	3.53	5.7	1.0	1.51	1.57
Merged-chr7-122217719-1	chr7	122217619	122217819	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1777.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.81	0.5	6.85	3.22	6.14	3.14	5.98	6.25	7.67	11.05	3.52	5.01
Merged-chr10-91142924-1	chr10	91142824	91143024	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18961.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	2.02	6.79	4.56	1.61	3.68	4.7	3.99	5.97	2.56	1.51	5.02	2.51
Merged-chr2-60037251-2	chr2	60037206	60037406	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88434.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	4.04	2.52	1.14	6.03	4.5	3.14	5.65	2.92	3.93	4.02	3.01	2.82
Merged-chrX-71131626-2	chrX	71131534	71131734	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 4 of 6)	intron (NM_001081354, intron 4 of 6)	-79133.0	NM_001164190	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	4.85	2.52	3.42	2.82	8.18	8.15	4.98	4.12	11.8	6.03	7.54	6.27
Merged-chr12-76329180-3	chr12	76329040	76329240	+	678.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101471, exon 2 of 2)	exon (NM_001101471, exon 2 of 2)	4249.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	5.65	4.78	13.12	11.26	8.18	9.09	3.32	5.16	13.18	3.51	18.59	9.4
Merged-chr9-63556560-3	chr9	63556459	63556659	+	678.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	45934.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	5.25	9.56	10.27	17.29	2.45	4.7	2.66	7.12	9.64	6.03	6.53	7.21
Merged-chr6-118137300-3	chr6	118137215	118137415	+	678.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	1515.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	6.46	2.77	10.84	10.05	7.77	15.99	2.99	11.3	11.01	8.54	9.04	5.64
Merged-chr13-98809247-2	chr13	98809155	98809355	+	678.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	B2_Mm2|SINE|B2	6194.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	7.27	6.54	9.13	3.22	3.68	7.21	1.0	3.34	11.21	5.52	17.59	12.22
Merged-chr1-79858484-2	chr1	79858431	79858631	+	678.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009255, exon 1 of 9)	5' UTR (NM_009255, exon 1 of 9)	134.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	4.85	6.54	7.42	2.01	7.77	6.27	7.64	7.79	6.88	3.51	8.54	6.89
Merged-chr10-23979520-2	chr10	23979426	23979626	+	678.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6120.0	NM_001010828	215855.0	Mm.377237	NM_001010828	ENSMUSG00000045111	Taar6	Gm228|taR-6	trace amine-associated receptor 6	protein-coding	6.86	4.28	2.28	4.02	6.95	6.9	10.3	9.79	10.03	5.02	8.54	6.58
Merged-chr10-80305097-2	chr10	80304999	80305199	+	678.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011789, intron 5 of 13)	intron (NM_011789, intron 5 of 13)	3279.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	6.46	5.53	7.42	16.49	6.14	11.29	8.64	7.32	13.57	8.03	10.55	4.39
Merged-chr19-55789343-2	chr19	55789234	55789434	+	678.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	47524.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.67	4.53	5.7	2.82	10.64	20.07	2.66	5.64	12.39	11.55	12.06	2.51
Merged-chr7-140078899-2	chr7	140078800	140079000	+	678.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026769, intron 1 of 5)	B3|SINE|B2	3401.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	12.52	7.55	10.84	2.41	5.73	4.7	3.32	6.36	9.05	11.05	12.06	6.58
Merged-chr4-142020162-2	chr4	142020041	142020241	+	678.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	B4A|SINE|B4	2243.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	2.02	1.51	3.42	4.42	2.45	9.09	6.98	6.59	2.56	5.02	8.04	7.52
Merged-chr1-134967813-1	chr1	134967713	134967913	+	678.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001278115, exon 2 of 7)	exon (NM_001278115, exon 2 of 7)	5248.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	10.09	4.78	7.42	6.03	6.55	5.33	5.65	6.53	7.67	3.01	8.04	9.71
Merged-chr2-103927631-1	chr2	103927531	103927731	+	678.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26680.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	1.62	1.01	11.98	1.21	2.45	6.9	7.97	6.22	2.95	3.51	9.55	5.64
Merged-chr9-50905479-1	chr9	50905379	50905579	+	678.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48555.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.85	4.02	1.14	9.65	6.55	7.21	7.64	7.57	6.69	8.03	11.56	9.71
Merged-chr2-126167369-1	chr2	126167269	126167469	+	678.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15228.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	9.29	9.56	11.41	11.66	4.5	5.02	3.99	5.21	4.92	5.02	8.54	5.64
Merged-chr2-166711061-3	chr2	166710905	166711105	+	678.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	2827.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.23	6.29	7.42	4.42	3.27	12.54	3.65	4.23	8.85	11.55	4.52	6.58
Merged-chr17-73948945-3	chr17	73948916	73949116	+	678.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1180.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.63	4.78	3.42	1.21	5.32	5.96	5.31	6.98	6.69	4.52	7.54	5.95
Merged-chr8-95132130-3	chr8	95132045	95132245	+	678.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	10395.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	2.42	8.05	3.42	5.23	7.77	11.92	9.97	16.54	10.23	11.05	8.54	5.01
Merged-chr4-135981086-1	chr4	135980986	135981186	+	678.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	6158.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	2.83	0.0	2.85	2.82	4.5	7.21	5.65	3.36	6.1	8.54	5.53	6.58
Merged-chr17-28419831-2	chr17	28419758	28419958	+	678.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-54642.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	10.5	1.26	5.7	7.24	7.36	3.14	4.32	6.08	2.36	7.53	12.56	6.58
Merged-chr18-83819176-2	chr18	83819055	83819255	+	678.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	267407.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	6.46	2.26	4.56	4.83	2.05	5.96	6.64	6.39	6.29	3.51	8.54	4.7
Merged-chr6-125149417-2	chr6	125149326	125149526	+	678.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	4202.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	5.65	5.53	1.14	7.64	12.68	8.78	4.98	7.43	4.13	1.51	3.01	4.7
Merged-chr11-54730094-2	chr11	54729993	54730193	+	678.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	ID|SINE|ID	57610.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.85	3.02	14.83	1.61	4.09	9.72	5.31	6.22	13.57	6.53	8.04	10.34
Merged-chr10-66881912-3	chr10	66881794	66881994	+	678.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38490.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	11.31	8.3	2.28	10.46	9.41	8.78	0.66	7.79	9.24	17.07	8.54	8.14
Merged-chr11-4297092-2	chr11	4296967	4297167	+	678.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30271.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	10.9	6.04	4.56	9.25	5.73	10.03	9.3	8.33	4.72	6.03	4.02	0.31
Merged-chr6-39228806-3	chr6	39228678	39228878	+	678.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22005.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.25	5.28	5.7	16.09	11.86	8.15	7.64	25.29	8.06	5.52	6.53	5.95
Merged-chr8-123024465-2	chr8	123024347	123024547	+	678.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17837.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	8.08	6.29	6.85	3.62	13.09	14.74	6.31	7.63	9.05	7.03	14.57	5.64
Merged-chr13-99791020-2	chr13	99790924	99791124	+	678.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109659.0	NM_013732	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	8.48	11.07	8.56	8.85	15.55	9.09	20.93	8.47	6.49	6.03	7.54	14.1
Merged-chr12-100352264-3	chr12	100352172	100352372	+	678.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 16 of 19)	intron (NM_001033213, intron 16 of 19)	75663.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.44	8.8	6.28	8.45	5.32	4.39	7.97	6.62	9.24	1.0	8.54	5.01
Merged-chr17-27046872-3	chr17	27046779	27046979	+	678.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10425.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	7.67	9.81	6.85	9.65	9.0	10.35	4.65	19.32	8.46	3.01	7.54	5.01
Merged-chr7-75639660-3	chr7	75639528	75639728	+	678.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	184094.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.46	8.05	4.56	4.02	8.59	9.72	8.3	5.69	5.7	10.04	3.52	5.33
Merged-chr8-34929759-3	chr8	34929663	34929863	+	678.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 2 of 26)	MTD|LTR|ERVL-MaLR	35927.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	8.48	6.29	6.85	7.24	13.09	10.03	12.29	10.18	8.65	10.04	9.55	3.45
Merged-chr12-112942565-1	chr12	112942465	112942665	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025399)	promoter-TSS (NM_025399)	-423.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	8.08	9.81	3.99	6.03	9.0	2.82	8.97	6.14	9.83	11.55	10.55	11.9
Merged-chrX-71988250-1	chrX	71988150	71988350	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003243, intron 4 of 4)	intron (NR_003243, intron 4 of 4)	-3599.0	NM_007724	12789.0	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	0.81	2.01	2.28	7.24	3.68	2.51	2.66	6.31	9.83	7.53	11.56	6.89
Merged-chr8-122983355-1	chr8	122983255	122983455	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	58929.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.81	3.02	1.71	0.0	5.32	6.27	2.33	5.13	0.2	0.0	0.0	0.94
Merged-chr13-30136479-1	chr13	30136379	30136579	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153546)	promoter-TSS (NM_153546)	-11.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	3.63	5.53	4.56	5.63	7.77	3.14	7.64	7.68	1.77	4.02	4.02	13.16
Merged-chr17-28259328-1	chr17	28259228	28259428	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	MTD|LTR|ERVL-MaLR	-12380.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	3.23	2.01	3.99	1.61	0.41	4.39	6.64	4.82	8.06	1.51	5.02	7.21
Merged-chr7-28826062-1	chr7	28825962	28826162	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016772, exon 2 of 10)	exon (NM_016772, exon 2 of 10)	724.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	2.02	1.26	1.14	1.21	9.0	10.35	3.99	5.33	4.72	1.51	3.52	3.13
Merged-chr8-25151135-2	chr8	25150967	25151167	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8166.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	3.23	6.29	6.28	2.41	4.09	3.76	1.66	1.18	0.59	1.51	2.01	3.45
Merged-chr15-59027922-1	chr15	59027822	59028022	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	54104.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	3.52	0.0	1.21	9.41	2.51	7.31	5.44	2.95	2.01	3.52	2.51
Merged-chr18-69585408-1	chr18	69585308	69585508	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	239248.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	10.9	3.02	9.13	3.62	4.91	3.76	4.65	10.32	5.31	8.03	13.06	8.46
Merged-chr10-88385884-1	chr10	88385784	88385984	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	6472.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	1.01	1.14	1.61	2.45	5.96	1.33	6.25	4.72	2.51	2.01	1.57
Merged-chr1-86303278-1	chr1	86303178	86303378	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145222)	promoter-TSS (NM_145222)	57.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	5.65	3.52	1.71	2.41	4.09	0.94	2.66	3.06	3.34	2.51	2.01	3.45
Merged-chr2-13272553-2	chr2	13272416	13272616	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1101.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	2.02	6.04	5.7	11.66	4.09	2.82	7.31	2.21	4.92	7.03	8.04	5.64
Merged-chr17-26781034-2	chr17	26780942	26781142	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172149)	promoter-TSS (NM_172149)	-37.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	7.27	1.76	1.14	4.42	9.41	13.17	3.65	7.57	5.31	10.54	5.02	11.28
Merged-chr10-118126910-1	chr10	118126810	118127010	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14877.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.81	3.77	3.99	2.82	2.05	5.02	7.31	5.86	1.38	3.01	0.5	1.57
Merged-chr8-117406706-1	chr8	117406606	117406806	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-46317.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	2.83	1.01	8.56	2.01	6.95	3.14	0.66	5.02	12.78	1.0	4.02	11.59
Merged-chr1-184573560-1	chr1	184573460	184573660	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15869.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	1.62	0.5	1.14	2.41	6.95	1.57	3.65	6.28	2.56	0.0	2.01	1.57
Merged-chr19-45221309-1	chr19	45221209	45221409	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13927.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	3.23	5.28	9.13	3.22	7.36	13.17	2.66	6.31	12.98	6.03	9.04	7.52
Merged-chr4-150113074-1	chr4	150112974	150113174	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6270.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	6.86	1.76	1.71	7.24	1.64	2.82	1.0	2.44	13.77	21.09	7.03	5.33
Merged-chr3-90451071-1	chr3	90450971	90451171	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008727, exon 22 of 22)	3' UTR (NM_008727, exon 22 of 22)	14795.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	3.63	1.76	0.0	8.04	8.59	5.02	5.65	4.51	0.59	4.52	4.02	4.07
Merged-chr10-25291385-1	chr10	25291285	25291485	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	7778.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.62	1.01	4.56	1.61	2.86	4.7	1.99	5.55	0.98	1.0	0.5	0.0
Merged-chr10-7825452-1	chr10	7825352	7825552	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7018.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	1.21	2.77	8.56	5.23	7.77	2.82	3.99	5.41	7.28	4.02	4.02	4.39
Merged-chr10-83857980-2	chr10	83857884	83858084	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep4096|DNA|hAT?	135119.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	3.63	2.01	4.56	4.42	4.09	0.63	5.31	6.7	8.06	1.0	15.58	13.16
Merged-chr6-115519461-1	chr6	115519361	115519561	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25243.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	2.02	1.51	1.14	1.61	7.36	4.08	0.33	2.24	3.54	0.5	4.02	1.88
Merged-chr18-82774544-1	chr18	82774444	82774644	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15505.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	8.88	6.79	5.13	3.62	0.82	1.88	4.98	5.21	3.93	7.53	7.54	4.39
Merged-chr3-146682564-1	chr3	146682464	146682664	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31247.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.81	4.28	5.7	7.24	3.27	5.02	6.64	5.61	1.38	1.51	2.01	1.88
Merged-chr9-40506636-1	chr9	40506536	40506736	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	24747.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.21	3.27	4.56	4.42	2.86	4.08	5.65	6.39	0.2	0.0	0.5	0.0
Merged-chr13-107811911-1	chr13	107811811	107812011	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	78153.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	11.31	1.51	9.13	3.22	3.68	5.33	1.66	6.17	1.77	0.5	5.02	3.45
Merged-chr17-80207861-1	chr17	80207761	80207961	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-556.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	6.06	8.8	2.28	10.46	7.77	20.38	6.31	5.61	9.64	4.52	8.54	13.47
Merged-chr16-85056399-1	chr16	85056299	85056499	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001198824, exon 6 of 17)	exon (NM_001198824, exon 6 of 17)	84188.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	1.62	0.5	2.28	4.02	4.09	1.88	5.65	5.27	4.13	4.52	6.03	4.07
Merged-chr8-119046281-1	chr8	119046181	119046381	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019707, intron 6 of 13)	IAPEz-int|LTR|ERVK	-298257.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	8.48	0.0	13.12	18.1	0.0	0.0	0.33	0.0	0.2	0.0	0.0	0.0
Merged-chr1-95598837-1	chr1	95598737	95598937	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	68757.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.85	3.77	1.14	2.82	8.18	4.39	4.32	8.58	8.26	8.03	1.0	6.58
Merged-chr16-28518850-1	chr16	28518750	28518950	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010199, intron 2 of 5)	L1MC4a|LINE|L1	45645.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.0	1.01	1.14	4.02	8.18	6.27	1.33	5.97	0.0	1.0	2.01	1.25
Merged-chr17-36843912-1	chr17	36843812	36844012	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	6766.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	2.42	6.29	0.0	2.82	3.68	2.2	2.33	7.74	9.05	4.02	11.56	7.21
Merged-chr1-191151280-1	chr1	191151180	191151380	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13537.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	6.06	2.77	1.14	1.61	4.09	4.39	6.64	4.07	3.34	9.54	5.53	3.13
Merged-chr6-39006924-1	chr6	39006824	39007024	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	60662.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	3.63	1.26	7.42	6.03	5.73	3.45	3.32	6.08	0.39	7.03	1.51	5.01
Merged-chr3-108112363-1	chr3	108112263	108112463	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010306, intron 6 of 8)	intron (NM_010306, intron 6 of 8)	19297.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	1.62	2.52	3.42	0.8	6.55	4.08	6.31	7.68	3.15	4.52	0.5	0.94
Merged-chr17-48274303-1	chr17	48274203	48274403	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033922, intron 5 of 5)	intron (NM_001033922, intron 5 of 5)	10008.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	8.88	2.26	4.56	8.85	7.36	4.39	1.0	5.36	9.64	7.03	6.03	5.01
Merged-chr1-128723010-1	chr1	128722910	128723110	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130711.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.65	4.02	3.42	10.46	4.91	6.27	6.64	5.27	5.9	5.52	0.0	4.39
Merged-chr11-60803809-2	chr11	60803694	60803894	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009171, intron 3 of 11)	intron (NM_009171, intron 3 of 11)	7471.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	14.13	11.07	4.56	8.45	6.14	8.78	4.65	1.23	9.44	9.04	4.52	5.95
Merged-chr11-80352024-1	chr11	80351924	80352124	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_139228, intron 8 of 8)	intron (NM_139228, intron 8 of 8)	25991.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	7.67	6.54	5.13	1.61	3.68	2.2	0.66	0.87	5.11	3.51	7.03	3.76
Merged-chr1-162738660-1	chr1	162738560	162738760	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1896.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.0	2.52	5.13	6.44	6.55	1.88	6.64	6.81	8.65	3.51	3.01	5.64
Merged-chr1-191170235-1	chr1	191170135	191170335	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007498)	TTS (NM_007498)	-5418.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	7.67	12.58	3.42	0.8	2.45	6.27	0.0	0.76	3.15	1.0	0.0	1.57
Merged-chr11-97548140-1	chr11	97548040	97548240	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	26986.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.23	3.52	6.85	0.0	9.82	5.02	0.0	2.72	13.18	12.05	6.03	3.45
Merged-chr2-119993386-2	chr2	119993280	119993480	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355293, intron 1 of 30)	MTD|LTR|ERVL-MaLR	20681.0	NM_011941	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.81	10.06	10.27	6.44	9.0	8.15	2.33	6.62	8.85	3.01	4.52	3.13
Merged-chr18-46423064-1	chr18	46422964	46423164	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42752.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.4	1.51	7.99	4.02	1.64	2.2	4.65	4.74	10.03	7.03	12.56	8.77
Merged-chr13-37581561-1	chr13	37581461	37581661	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	236216.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.44	4.78	5.7	1.21	6.95	2.51	3.99	1.85	9.44	8.03	10.55	6.27
Merged-chr13-80898663-1	chr13	80898563	80898763	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12568.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	4.04	1.76	3.42	2.01	1.23	0.63	5.31	4.32	2.56	4.02	2.51	5.95
Merged-chr12-26401922-1	chr12	26401822	26402022	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	13088.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	5.65	3.52	11.98	3.62	7.36	1.88	0.33	7.43	2.75	0.0	0.0	0.0
Merged-chr16-17368197-1	chr16	17368097	17368297	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001983, intron 7 of 54)	intron (NM_001001983, intron 7 of 54)	36826.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	1.21	1.01	4.56	4.42	4.91	3.76	5.31	7.51	1.97	0.5	3.52	2.82
Merged-chr4-134930267-1	chr4	134930167	134930367	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-713.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	8.08	12.07	9.7	12.47	11.05	6.59	2.99	5.55	7.47	8.03	5.53	9.4
Merged-chr12-25251563-1	chr12	25251463	25251663	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	122389.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.52	8.3	9.7	10.05	4.91	16.31	2.99	3.17	12.78	6.53	7.54	5.95
Merged-chr6-122925785-1	chr6	122925685	122925885	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199311, intron 2 of 5)	intron (NM_199311, intron 2 of 5)	3937.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	4.85	1.51	10.27	4.83	6.14	4.7	2.33	8.3	2.75	12.05	7.54	4.7
Merged-chr1-77848533-1	chr1	77848433	77848633	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-333445.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.25	0.57	4.02	2.05	1.25	4.65	4.74	1.77	1.0	7.03	2.82
Merged-chr10-75551311-1	chr10	75551211	75551411	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198860, exon 4 of 4)	3' UTR (NM_198860, exon 4 of 4)	9019.0	NM_198860	192734.0	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.0	3.27	3.42	7.24	0.82	2.82	5.65	7.29	3.93	1.0	5.02	2.19
Merged-chr6-31080459-1	chr6	31080359	31080559	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17366.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	4.44	11.07	4.56	9.65	9.0	6.27	2.99	10.82	8.65	15.06	6.03	14.72
Merged-chr11-76525130-1	chr11	76525030	76525230	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-15711.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.06	1.76	8.56	5.23	6.14	8.47	2.33	6.36	8.46	7.53	12.56	3.13
Merged-chr4-156077059-1	chr4	156076959	156077159	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17257.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	5.25	4.53	1.71	2.41	5.73	3.76	2.99	6.95	3.74	3.51	14.07	5.64
Merged-chr2-18047953-2	chr2	18047856	18048056	+	677.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	493.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	10.5	6.29	1.14	10.46	2.05	7.84	2.66	9.48	7.28	7.53	10.55	3.13
Merged-chr4-41388705-2	chr4	41388606	41388806	+	677.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290454, exon 6 of 6)	exon (NM_001290454, exon 6 of 6)	36743.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.25	9.56	5.7	2.01	9.41	10.66	6.64	8.83	3.34	10.04	9.04	9.08
Merged-chr12-34672897-3	chr12	34672793	34672993	+	677.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-144004.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.46	7.55	5.13	9.25	2.86	10.35	7.97	7.93	9.44	6.03	8.54	6.58
Merged-chr1-182140537-2	chr1	182140432	182140632	+	677.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15795.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	12.52	4.78	3.42	3.62	8.59	8.47	4.65	6.98	11.6	8.03	10.05	6.89
Merged-chr17-50237528-2	chr17	50237433	50237633	+	677.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1675.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	5.65	4.28	6.85	4.83	7.36	9.41	5.65	9.59	18.29	4.02	14.07	5.64
Merged-chr14-72595495-2	chr14	72595394	72595594	+	677.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	114509.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	13.33	6.54	5.13	1.61	7.77	9.72	12.29	6.56	6.1	8.54	8.54	2.82
Merged-chr1-179561270-2	chr1	179561169	179561369	+	677.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	14740.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	1.62	3.02	6.85	4.02	6.95	10.66	5.31	9.2	3.93	5.52	11.05	13.16
Merged-chr2-22816450-2	chr2	22816354	22816554	+	677.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	42127.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.06	6.04	10.27	4.02	6.55	7.53	3.65	7.54	8.06	11.55	15.07	11.28
Merged-chr13-100892313-1	chr13	100892213	100892413	+	677.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58886.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.65	4.02	1.14	4.42	13.09	12.86	9.3	3.56	9.24	12.55	4.52	5.01
Merged-chr7-89236841-3	chr7	89236742	89236942	+	677.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	101945.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.48	2.77	10.84	6.44	6.55	9.41	11.63	21.56	9.24	10.54	17.08	6.58
Merged-chr18-25621508-2	chr18	25621420	25621620	+	677.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	58228.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.23	3.52	11.41	11.26	5.73	9.09	2.99	7.12	3.54	2.01	2.01	4.07
Merged-chr17-56930250-2	chr17	56930149	56930349	+	677.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5139.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	6.86	5.03	2.28	6.84	4.5	7.53	4.32	6.28	7.67	12.05	9.04	10.34
Merged-chr18-61466196-1	chr18	61466096	61466296	+	677.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18411.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	3.63	5.53	10.27	6.84	4.09	9.72	11.96	6.2	7.28	5.02	5.02	8.14
Merged-chr9-21017802-2	chr9	21017702	21017902	+	677.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010493, intron 1 of 6)	B1F2|SINE|Alu	1862.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	7.27	9.56	8.56	4.02	6.55	12.86	3.65	4.07	17.31	8.03	6.03	12.22
Merged-chr14-103048511-2	chr14	103048402	103048602	+	677.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1490.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	3.63	6.54	9.13	4.83	3.68	11.6	5.98	6.25	25.37	8.54	13.06	8.77
Merged-chr4-102568745-1	chr4	102568645	102568845	+	677.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-1315.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.88	4.53	4.56	5.23	12.68	9.72	9.63	6.7	7.67	2.51	9.04	9.71
Merged-chr6-91669481-1	chr6	91669381	91669581	+	677.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-14586.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.86	2.52	3.42	4.42	9.0	8.15	2.66	6.53	9.24	8.03	5.02	3.76
Merged-chr5-24652259-3	chr5	24652151	24652351	+	677.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6798.0	NR_003953	72252.0	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	7.27	7.04	5.13	9.25	9.41	9.09	4.98	12.95	10.23	7.53	21.1	12.53
Merged-chr14-73059879-2	chr14	73059812	73060012	+	677.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10798.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	3.63	2.52	8.56	8.45	13.91	7.21	3.65	8.33	10.62	6.03	9.04	4.07
Merged-chr13-54822097-2	chr13	54821988	54822188	+	677.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32683.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	6.46	7.55	14.83	4.42	11.86	6.59	6.98	5.16	6.49	3.01	7.54	3.76
Merged-chr13-111966774-1	chr13	111966674	111966874	+	677.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98838.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	1.01	0.0	0.0	7.77	8.78	8.3	6.14	0.0	0.0	2.51	0.94
Merged-chr16-57607203-2	chr16	57607118	57607318	+	677.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	-351.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	7.27	9.06	4.56	8.85	9.82	10.98	8.3	5.69	4.33	8.03	5.02	4.7
Merged-chr2-29664267-3	chr2	29664165	29664365	+	677.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	44545.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.65	7.8	15.97	6.03	13.5	13.8	8.97	6.31	11.6	17.07	12.56	14.72
Merged-chr2-166564668-2	chr2	166564585	166564785	+	677.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152154, exon 1 of 2)	non-coding (NR_152154, exon 1 of 2)	163.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	6.06	6.04	6.85	4.42	9.0	10.66	7.64	5.86	9.44	10.54	6.53	9.4
Merged-chr18-67289906-2	chr18	67289820	67290020	+	677.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	697.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	7.27	3.02	6.28	3.62	6.55	8.78	3.32	6.28	4.72	7.53	13.06	9.71
Merged-chr14-70021591-2	chr14	70021468	70021668	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55877.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.23	2.77	3.99	5.23	2.05	9.09	8.3	4.74	7.28	6.03	10.55	3.45
Merged-chr1-66232191-1	chr1	66232091	66232291	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039934, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	56862.0	NM_001039934	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	14.54	13.58	11.41	8.04	3.27	1.88	0.0	0.0	1.57	0.5	0.5	1.57
Merged-chr7-143784222-1	chr7	143784122	143784322	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175534, exon 1 of 2)	5' UTR (NM_175534, exon 1 of 2)	278.0	NM_175534	244238.0	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	6.86	6.04	2.28	1.61	6.55	2.51	6.64	5.07	3.34	5.02	5.02	2.82
Merged-chr10-120840153-1	chr10	120840053	120840253	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	L1_Rod|LINE|L1	-17476.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	3.23	5.28	1.14	4.83	2.86	6.59	8.64	5.41	0.39	1.51	1.51	0.63
Merged-chr10-42274629-2	chr10	42274589	42274789	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2053.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	6.06	11.32	1.14	5.63	4.5	3.14	3.32	3.93	3.93	2.51	3.01	9.4
Merged-chr13-73489458-2	chr13	73489356	73489556	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 3 of 13)	intron (NM_145376, intron 3 of 13)	22073.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	6.06	8.8	3.42	3.22	4.09	10.03	7.97	5.41	10.62	10.54	7.54	2.82
Merged-chr10-34129159-1	chr10	34129059	34129259	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1187.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.81	1.01	0.0	4.42	4.5	5.33	6.98	5.69	2.95	12.55	5.02	3.45
Merged-chr14-122064725-2	chr14	122064624	122064824	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30050.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	8.08	3.77	8.56	3.62	7.36	9.72	5.98	9.81	9.05	11.05	13.57	3.45
Merged-chr6-37097590-1	chr6	37097490	37097690	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081206, exon 4 of 34)	exon (NM_001081206, exon 4 of 34)	202386.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.65	2.26	9.7	3.22	6.14	6.9	5.65	13.6	5.51	4.02	12.06	4.7
Merged-chr8-13213468-2	chr8	13213377	13213577	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12853.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	1.62	4.28	1.14	0.8	2.45	5.33	3.99	9.64	2.75	7.03	2.01	7.52
Merged-chr5-98330493-1	chr5	98330393	98330593	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 1 of 5)	intron (NM_001024614, intron 1 of 5)	1189.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.0	0.0	1.14	0.0	6.55	5.96	1.33	6.28	1.97	0.0	0.0	4.07
Merged-chr9-103366779-2	chr9	103366666	103366866	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134426)	promoter-TSS (NM_001134426)	-986.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	2.83	12.83	6.85	3.22	10.64	27.91	2.99	5.16	12.19	10.04	5.02	2.51
Merged-chr2-60209306-3	chr2	60209225	60209425	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-611.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	9.29	6.04	9.13	5.63	6.14	7.21	9.97	7.71	4.33	11.05	10.05	7.83
Merged-chr2-35200289-2	chr2	35200180	35200380	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	CpG	840.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	10.09	4.02	8.56	3.22	6.14	6.27	8.3	5.47	11.01	10.04	4.02	7.21
Merged-chr8-115635500-1	chr8	115635400	115635600	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71394.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	1.21	4.02	4.56	6.44	2.05	4.39	3.65	5.55	1.77	4.02	3.01	1.57
Merged-chr2-34371290-1	chr2	34371190	34371390	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290576, intron 1 of 7)	CpG	755.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	9.29	7.29	0.0	6.84	14.32	4.08	4.98	6.08	14.36	5.52	1.51	8.46
Merged-chr13-81129003-1	chr13	81128903	81129103	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	L1MA6|LINE|L1	164929.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	1.21	2.52	3.42	2.41	5.73	4.39	5.98	5.3	7.47	8.03	8.54	3.76
Merged-chr4-134160241-1	chr4	134160141	134160341	+	677.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144527, intron 3 of 13)	RLTR4_MM-int|LTR|ERV1	26844.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.78	23.1	11.05	7.83
Merged-chr17-81518855-2	chr17	81518770	81518970	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219517.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	1.21	3.52	2.85	4.42	8.18	7.84	3.99	10.15	10.42	5.02	3.52	12.84
Merged-chr13-12459933-2	chr13	12459827	12460027	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291055)	promoter-TSS (NM_001291055)	-611.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	2.02	2.77	3.99	4.02	1.64	5.33	6.64	5.02	10.82	4.52	5.02	11.9
Merged-chr12-80758456-1	chr12	80758356	80758556	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2259.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	2.83	3.02	2.85	9.65	3.27	8.15	4.65	5.61	7.08	9.04	7.03	4.39
Merged-chr17-87106039-2	chr17	87105956	87106156	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1623.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	6.86	8.05	11.98	7.64	2.86	0.0	6.98	12.45	8.26	6.03	7.54	6.27
Merged-chr11-67965577-3	chr11	67965437	67965637	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	105.0	NM_027963	71860.0	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	10.5	7.04	6.85	3.22	6.95	5.02	11.63	6.14	6.88	9.54	7.03	6.58
Merged-chr16-59491825-2	chr16	59491723	59491923	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025910, exon 10 of 10)	exon (NM_025910, exon 10 of 10)	20048.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	8.88	3.77	5.7	12.07	5.32	6.9	4.65	11.64	0.2	1.0	0.5	0.0
Merged-chr1-186123894-2	chr1	186123806	186124006	+	677.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6596.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.5	0.0	1.61	6.14	7.84	9.3	6.87	10.82	11.55	9.04	5.95
Merged-chr5-137718169-3	chr5	137718060	137718260	+	677.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21642.0	NM_175521	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	4.44	7.8	10.84	12.87	7.77	10.03	2.66	9.03	10.23	10.04	8.54	6.89
Merged-chr9-96350214-3	chr9	96350145	96350345	+	677.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	13470.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.08	6.79	10.27	12.47	7.77	18.5	3.65	5.75	10.42	11.05	9.55	5.64
Merged-chr7-110221273-2	chr7	110221173	110221373	+	677.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-430.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	10.09	6.79	9.13	14.48	12.68	9.72	12.29	6.17	13.18	11.05	12.06	5.33
Merged-chr13-94976986-3	chr13	94976897	94977097	+	677.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	653.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	9.69	8.3	11.41	4.42	5.32	5.64	8.3	7.18	10.62	9.54	4.52	10.65
Merged-chr1-155140270-2	chr1	155140185	155140385	+	677.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	6529.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	8.48	3.52	2.85	4.83	6.95	6.59	5.65	9.9	8.46	10.54	10.55	5.33
Merged-chr4-129016411-2	chr4	129016303	129016503	+	677.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23179.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	11.31	11.57	10.27	0.8	7.36	13.48	5.65	3.62	11.21	13.05	6.53	1.25
Merged-chr6-83156440-3	chr6	83156341	83156541	+	677.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023790)	promoter-TSS (NM_023790)	37.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	7.27	6.54	6.85	7.64	3.27	8.15	6.31	6.9	8.46	10.54	14.07	6.27
Merged-chr18-9451115-1	chr18	9451015	9451215	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-961.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.81	4.02	2.28	0.8	4.91	3.45	5.98	5.94	2.95	2.51	5.53	4.7
Merged-chr8-86873657-1	chr8	86873557	86873757	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11601.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	8.08	5.28	1.71	3.22	7.77	9.09	6.64	6.9	5.31	8.03	11.56	0.0
Merged-chr17-57077871-1	chr17	57077771	57077971	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153551, intron 1 of 23)	intron (NM_153551, intron 1 of 23)	639.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.81	0.5	0.0	0.8	4.09	3.45	1.0	3.11	1.97	4.02	2.51	1.88
Merged-chr7-48962109-1	chr7	48962009	48962209	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 1 of 38)	intron (NM_001111016, intron 1 of 38)	3036.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.44	6.04	7.42	4.42	5.73	3.45	3.99	9.67	6.1	1.0	7.03	5.33
Merged-chr19-32881742-1	chr19	32881642	32881842	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	124165.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.06	2.77	1.14	2.41	6.55	5.64	6.64	4.57	5.31	1.0	5.53	1.25
Merged-chr3-144603753-1	chr3	144603653	144603853	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33326.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	2.83	2.01	2.28	2.41	6.14	5.02	10.3	6.73	6.88	8.03	12.56	5.95
Merged-chr13-102094350-3	chr13	102094270	102094470	+	677.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-326153.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.04	5.03	13.12	8.85	7.77	10.03	4.98	11.61	12.0	13.05	13.57	9.71
Merged-chr14-66279478-4	chr14	66279380	66279580	+	677.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	1572.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	8.88	2.26	0.0	8.04	2.45	1.88	5.31	5.86	9.24	5.02	13.06	9.71
Merged-chr17-34165272-2	chr17	34165167	34165367	+	677.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	12076.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	2.42	6.29	6.85	6.44	5.73	8.78	7.64	4.04	11.41	12.05	16.08	6.89
Merged-chr5-38580972-2	chr5	38580850	38581050	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19355.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	3.23	5.28	1.14	2.82	3.27	13.8	3.99	5.72	6.49	8.54	13.06	8.77
Merged-chr12-8928904-2	chr12	8928800	8929000	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7593.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	4.85	3.27	0.0	9.25	4.91	5.96	4.98	7.6	9.05	13.05	15.58	5.64
Merged-chr13-59818507-2	chr13	59818421	59818621	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	4626.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.85	2.77	13.12	6.84	5.32	5.96	8.3	6.79	9.64	12.05	10.05	5.01
Merged-chr9-46106414-2	chr9	46106255	46106455	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	93535.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	1.62	9.06	2.85	4.02	2.05	7.21	4.65	4.04	6.29	6.03	2.01	6.89
Merged-chr5-108031993-2	chr5	108031893	108032093	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-33681.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.81	1.51	1.14	1.61	3.27	8.78	4.98	6.81	4.92	7.03	5.53	10.96
Merged-chr13-58068709-2	chr13	58068587	58068787	+	677.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	33741.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	6.06	4.02	10.27	6.84	5.73	6.59	6.98	9.08	1.97	0.5	3.01	6.89
Merged-chrX-56822432-2	chrX	56822345	56822545	+	677.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177293)	promoter-TSS (NM_177293)	-120.0	NM_177293	320923.0	Mm.186745	NM_177293	ENSMUSG00000067878	Map7d3	4933424A10Rik|Mtap7d3	MAP7 domain containing 3	protein-coding	5.65	8.05	2.28	2.82	12.27	2.51	5.65	4.74	4.33	2.51	7.54	3.45
Merged-chr8-37049541-2	chr8	37049434	37049634	+	677.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-25296.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	7.67	6.54	13.12	37.81	6.95	8.47	12.29	16.35	5.31	2.01	5.02	3.13
Merged-chr17-84935797-2	chr17	84935700	84935900	+	677.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20941.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	1.51	0.0	0.8	4.91	5.64	3.32	21.36	8.26	10.04	12.06	8.14
Merged-chr10-80446411-3	chr10	80446296	80446496	+	677.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12743.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	9.29	7.55	9.7	2.41	17.18	15.99	5.98	3.98	9.44	12.55	6.53	8.46
Merged-chr7-96914253-3	chr7	96914153	96914353	+	677.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37274.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.23	7.29	7.42	7.24	7.77	8.15	10.3	8.69	9.83	3.51	9.04	7.52
Merged-chr7-102042418-2	chr7	102042301	102042501	+	677.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 2 of 8)	MIR|SINE|MIR	22764.0	NM_029211	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	6.06	3.52	10.27	8.85	4.5	6.27	3.32	6.03	7.67	14.06	13.57	5.33
Merged-chr11-26389773-2	chr11	26389671	26389871	+	677.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277273, intron 1 of 13)	intron (NM_001277273, intron 1 of 13)	2687.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	10.9	8.55	6.85	14.88	1.23	3.14	2.99	4.54	7.67	3.01	6.53	5.64
Merged-chr10-54058546-2	chr10	54058436	54058636	+	677.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	17260.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	6.46	5.53	5.7	6.44	11.45	7.21	1.99	12.53	10.23	3.01	13.57	3.76
Merged-chr1-144406793-2	chr1	144406703	144406903	+	677.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157699.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.23	4.02	1.71	5.63	6.55	7.21	6.31	6.59	9.83	14.56	10.55	5.33
Merged-chr12-8306689-2	chr12	8306580	8306780	+	677.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	7.67	6.29	6.28	5.23	6.95	8.15	7.64	6.08	7.28	8.03	10.05	5.33
Merged-chr3-136080181-3	chr3	136080074	136080274	+	677.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 11 of 16)	ORR1E|LTR|ERVL-MaLR	-239905.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	5.25	10.56	9.13	12.47	2.05	4.08	6.31	10.57	10.23	4.52	14.07	7.21
Merged-chr10-95680590-2	chr10	95680488	95680688	+	677.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-116442.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	8.08	3.27	3.42	6.44	22.09	9.41	5.65	7.99	10.62	8.03	18.09	7.52
Merged-chr17-33897291-3	chr17	33897211	33897411	+	677.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-6678.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	12.52	15.85	4.56	6.03	7.36	11.92	4.65	5.05	11.6	16.07	9.04	13.47
Merged-chr4-110668158-2	chr4	110668045	110668245	+	677.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284190, intron 3 of 12)	intron (NM_001284190, intron 3 of 12)	270447.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	6.86	6.79	3.99	1.61	4.5	7.84	7.64	11.78	4.52	9.54	6.03	3.76
Merged-chr8-70543769-1	chr8	70543669	70543869	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4094.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.63	2.01	8.56	2.01	5.32	5.96	3.65	5.86	6.88	4.02	5.02	6.27
Merged-chr9-47621903-1	chr9	47621803	47622003	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	91551.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	8.88	2.01	12.55	6.44	15.14	9.09	4.32	5.38	6.69	7.03	9.04	8.46
Merged-chr15-42520909-1	chr15	42520809	42521009	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286062, intron 2 of 8)	intron (NM_001286062, intron 2 of 8)	156068.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	3.23	1.51	1.14	4.83	5.73	7.21	1.66	8.02	3.34	11.05	3.52	4.39
Merged-chr14-46825129-1	chr14	46825029	46825229	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2887.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.81	1.01	1.14	0.8	0.82	0.94	5.65	5.38	0.98	0.5	2.51	0.63
Merged-chr9-102636733-1	chr9	102636633	102636833	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10437.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	4.44	8.05	6.85	1.21	9.0	5.64	9.97	2.66	5.51	11.05	6.53	2.51
Merged-chr11-70605361-2	chr11	70605286	70605486	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 12 of 30)	intron (NM_016713, intron 12 of 30)	-10508.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	6.06	5.79	10.84	3.22	4.91	6.27	2.33	4.85	11.6	7.53	15.58	5.01
Merged-chr2-26928257-1	chr2	26928157	26928357	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	5254.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	2.02	4.02	4.56	1.61	2.05	3.45	4.65	6.7	6.69	1.0	3.52	5.95
Merged-chr18-38484515-1	chr18	38484415	38484615	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65608.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.44	3.77	2.28	5.23	1.23	5.96	7.64	6.06	3.93	10.54	4.02	2.82
Merged-chr4-116246132-1	chr4	116246032	116246232	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355586, intron 1 of 9)	B2_Mm1t|SINE|B2	23385.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	5.65	1.51	2.85	1.61	2.05	7.84	6.98	3.87	9.05	16.07	16.58	5.33
Merged-chr16-76332318-1	chr16	76332218	76332418	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	40731.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.85	5.53	0.0	0.0	3.27	7.21	4.32	2.21	16.52	9.04	11.05	3.45
Merged-chr3-96663783-2	chr3	96663683	96663883	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001302471, exon 30 of 30)	3' UTR (NM_001302471, exon 30 of 30)	-6348.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	7.27	5.03	1.14	1.61	1.64	13.8	6.64	2.69	10.23	9.54	3.52	4.7
Merged-chr18-4044702-2	chr18	4044605	4044805	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121127.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.23	1.51	1.71	13.27	2.86	2.51	4.98	4.71	10.82	2.01	11.05	2.82
Merged-chr17-80684074-1	chr17	80683974	80684174	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	43951.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.04	4.02	1.14	2.41	3.27	6.59	6.64	5.24	8.65	7.03	6.03	5.64
Merged-chr8-24595699-1	chr8	24595599	24595799	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001293690)	promoter-TSS (NM_001293690)	-33.0	NM_001293690	15930.0	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.4	2.01	1.14	5.63	4.09	5.96	4.65	5.94	7.87	2.51	14.07	3.13
Merged-chr5-138755870-2	chr5	138755784	138755984	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030565, exon 1 of 10)	exon (NM_030565, exon 1 of 10)	803.0	NM_001359593	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	6.06	4.28	1.14	1.61	4.5	4.08	7.31	3.93	5.7	1.51	6.03	5.01
Merged-chr12-99975282-1	chr12	99975182	99975382	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10783.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.25	1.26	2.28	1.21	0.41	2.2	4.32	7.88	4.92	1.0	4.02	3.45
Merged-chr14-78765240-1	chr14	78765140	78765340	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32511.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	6.86	4.78	5.13	4.42	6.55	5.02	2.66	10.82	1.38	0.0	4.02	1.88
Merged-chr11-77453837-1	chr11	77453737	77453937	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-10076.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.4	0.75	2.85	2.82	0.0	4.39	3.32	2.38	2.36	1.0	7.54	0.94
Merged-chr6-31214617-1	chr6	31214517	31214717	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	3857.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.02	1.51	9.13	0.4	1.64	3.76	0.0	2.38	3.15	0.5	1.0	0.94
Merged-chr5-8356568-1	chr5	8356468	8356668	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	11592.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	1.62	6.04	3.42	2.41	3.27	2.51	4.65	4.35	7.28	1.0	1.0	5.33
Merged-chr8-80323382-1	chr8	80323282	80323482	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-170663.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	2.42	2.52	0.0	3.62	4.91	1.25	4.65	4.99	0.39	2.01	1.0	1.57
Merged-chr1-136459169-2	chr1	136459091	136459291	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8657.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	4.44	6.29	5.7	3.22	9.41	6.9	2.66	6.87	6.88	6.53	3.52	3.76
Merged-chr5-17882081-2	chr5	17881981	17882181	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6878.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.06	2.77	3.42	5.63	3.27	7.21	1.66	6.76	8.26	3.51	9.04	2.51
Merged-chr2-72290112-1	chr2	72290012	72290212	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	4411.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.63	6.04	10.27	2.82	2.45	6.27	4.98	5.36	2.75	4.52	2.51	4.7
Merged-chr17-7928038-2	chr17	7927939	7928139	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145968, intron 4 of 9)	intron (NM_145968, intron 4 of 9)	2039.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.85	6.04	2.85	3.22	7.36	10.35	5.98	4.09	12.39	5.02	13.57	7.52
Merged-chr10-59227427-1	chr10	59227327	59227527	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172939)	TTS (NM_172939)	5505.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	9.29	7.55	5.13	0.4	9.41	5.33	2.33	0.93	3.15	12.05	6.53	1.57
Merged-chr15-96642168-2	chr15	96642108	96642308	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	135.0	NM_001166456	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.85	6.79	7.42	4.42	7.77	19.76	6.98	12.28	9.83	12.05	15.07	6.58
Merged-chr6-100439296-1	chr6	100439196	100439396	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-88104.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	3.23	2.77	3.99	9.65	7.36	5.33	4.98	6.81	5.51	7.03	10.05	7.83
Merged-chr17-51294766-1	chr17	51294666	51294866	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	16778.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	5.65	4.78	6.85	15.69	6.95	5.96	4.98	10.82	2.56	5.52	7.03	2.51
Merged-chr1-35993143-1	chr1	35993043	35993243	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75257.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.04	5.79	2.85	5.63	4.09	7.21	0.66	6.64	4.52	3.01	5.53	5.01
Merged-chr12-12222747-2	chr12	12222643	12222843	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39396.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.04	6.54	3.42	1.61	7.77	4.08	4.98	7.99	8.06	8.54	1.51	5.64
Merged-chr16-36770354-1	chr16	36770254	36770454	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021301, intron 7 of 21)	intron (NM_021301, intron 7 of 21)	14608.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	8.06	11.05	53.77	1.25
Merged-chr3-31459623-1	chr3	31459523	31459723	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149304.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.23	3.27	0.0	0.0	4.09	5.02	3.99	2.86	5.9	3.51	3.01	1.88
Merged-chr17-32363996-1	chr17	32363896	32364096	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13419.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	6.06	1.51	4.56	0.8	0.41	2.51	1.99	0.67	3.34	9.54	3.01	6.27
Merged-chr12-83485996-1	chr12	83485896	83486096	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_058212, intron 1 of 8)	CpG	1740.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	5.25	9.56	1.14	3.22	6.14	6.9	4.32	6.42	6.49	8.54	13.57	1.88
Merged-chr1-156491386-1	chr1	156491286	156491486	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17058.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.85	1.51	5.7	3.62	4.09	6.27	1.66	4.79	7.47	1.0	1.51	2.51
Merged-chr16-90223728-1	chr16	90223628	90223828	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011434, intron 2 of 4)	intron (NM_011434, intron 2 of 4)	2986.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.46	3.52	5.13	0.8	10.64	9.41	1.99	6.76	4.13	15.06	9.55	1.88
Merged-chr10-18997885-1	chr10	18997785	18997985	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14078.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.63	4.78	1.14	0.0	0.0	3.76	0.0	0.0	2.16	1.0	0.0	0.0
Merged-chr16-38714158-1	chr16	38714058	38714258	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1123.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.4	0.75	2.28	1.61	0.0	0.0	0.0	0.5	8.65	4.52	5.53	7.83
Merged-chr7-35093828-1	chr7	35093728	35093928	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-25465.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.81	3.27	3.42	5.63	9.0	3.76	3.99	7.88	4.33	3.51	2.51	3.76
Merged-chr18-82855354-1	chr18	82855254	82855454	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-543.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	9.69	3.77	7.42	3.22	12.27	5.33	2.66	4.99	9.44	7.03	6.03	0.94
Merged-chr7-80025875-1	chr7	80025775	80025975	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175433)	promoter-TSS (NM_175433)	-353.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.65	5.28	1.14	4.02	5.32	1.88	4.32	6.28	2.95	4.52	4.52	7.52
Merged-chr3-95053158-1	chr3	95053058	95053258	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10544.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.81	2.26	1.14	2.41	4.91	7.53	5.31	4.82	8.65	13.05	6.53	2.82
Merged-chr3-108086296-1	chr3	108086196	108086396	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	320.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	9.69	11.57	7.42	14.88	8.18	11.6	6.98	6.08	11.41	8.03	13.57	5.33
Merged-chr17-84035104-1	chr17	84035004	84035204	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	36552.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	5.65	3.02	2.28	3.22	2.05	5.96	1.33	6.59	4.52	0.0	4.02	0.94
Merged-chr11-17183421-1	chr11	17183321	17183521	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024459, intron 2 of 5)	ORR1C1|LTR|ERVL-MaLR	24123.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	2.42	3.52	3.42	4.42	5.73	7.84	3.65	5.83	4.52	9.54	2.01	0.63
Merged-chr6-17589858-3	chr6	17589722	17589922	+	676.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47188.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.06	5.28	5.7	6.84	4.91	5.33	9.97	9.56	10.03	7.53	22.61	10.02
Merged-chr9-90380256-2	chr9	90380151	90380351	+	676.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-109482.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.04	10.06	10.84	5.23	3.68	4.7	5.31	6.48	12.59	10.04	29.14	6.27
Merged-chr13-111870578-2	chr13	111870463	111870663	+	676.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130345, intron 2 of 2)	intron (NR_130345, intron 2 of 2)	2627.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	9.29	6.54	7.99	6.84	7.36	5.64	6.64	6.53	4.13	4.02	16.08	2.51
Merged-chr11-120624488-2	chr11	120624386	120624586	+	676.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_105901)	TTS (NR_105901)	390.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	6.06	8.8	6.85	8.45	13.91	10.66	5.31	5.44	4.92	8.54	27.13	10.65
Merged-chr7-45922441-2	chr7	45922311	45922511	+	676.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-985.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	6.86	7.29	2.28	1.61	7.36	8.15	6.31	5.21	7.08	7.53	10.55	10.34
Merged-chr10-43994770-3	chr10	43994676	43994876	+	676.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	10070.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	9.69	9.81	6.85	9.25	8.59	6.9	9.63	14.02	5.11	6.53	10.05	6.89
Merged-chr1-157517602-1	chr1	157517502	157517702	+	676.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033354, intron 2 of 27)	B3A|SINE|B2	-5879.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	11.71	5.53	11.98	15.69	4.09	1.88	0.33	6.06	10.42	6.53	5.53	3.45
Merged-chr11-120346676-3	chr11	120346605	120346805	+	676.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105900)	TTS (NR_105900)	708.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	3.63	4.78	7.99	5.23	2.45	6.27	6.31	1.46	11.41	7.03	6.03	9.71
Merged-chr11-29375915-1	chr11	29375815	29376015	+	676.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176841, intron 2 of 31)	MTD|LTR|ERVL-MaLR	1743.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	5.65	10.06	3.99	2.01	9.41	6.9	4.65	4.99	3.93	5.02	5.02	0.31
Merged-chr2-154570685-3	chr2	154570589	154570789	+	676.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-797.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	8.48	9.31	5.7	1.61	6.14	5.02	2.99	8.64	8.65	13.05	13.06	4.39
Merged-chr14-75191299-2	chr14	75191261	75191461	+	676.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-50926.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	8.48	2.77	5.13	2.82	3.68	2.51	9.97	2.66	10.42	10.54	8.54	6.27
Merged-chr5-121815286-2	chr5	121815191	121815391	+	676.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008507)	TTS (NM_008507)	3982.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	6.46	5.03	5.7	7.64	11.45	13.17	4.98	6.53	8.06	8.54	14.57	14.72
Merged-chr5-99460202-3	chr5	99460110	99460310	+	676.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-207283.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.65	7.55	3.42	10.46	14.73	8.47	8.3	8.33	8.46	10.04	9.55	5.01
Merged-chr2-152692073-3	chr2	152691977	152692177	+	676.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	4929.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.23	6.79	11.41	6.84	12.68	4.7	5.31	14.22	8.65	4.52	13.57	10.34
Merged-chr8-105218152-1	chr8	105218052	105218252	+	676.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001161457)	TTS (NM_001161457)	-7036.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	2.83	4.02	3.42	6.84	9.0	9.09	13.95	6.67	7.28	3.51	6.53	3.76
Merged-chr5-129501861-3	chr5	129501756	129501956	+	676.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359952, intron 1 of 17)	CpG	625.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	6.86	9.31	6.28	13.27	7.77	4.08	5.31	4.93	8.46	10.04	12.56	6.89
Merged-chr2-154943284-1	chr2	154943184	154943384	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50378.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	6.86	3.52	3.42	6.03	9.0	7.84	4.98	5.33	3.34	4.52	7.03	5.33
Merged-chr14-47250037-1	chr14	47249937	47250137	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360532, intron 17 of 24)	intron (NM_001360532, intron 17 of 24)	26820.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	6.46	5.03	6.85	2.82	8.18	5.96	2.33	6.98	3.34	2.51	6.03	2.51
Merged-chr11-52374515-1	chr11	52374415	52374615	+	676.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011694, intron 2 of 8)	intron (NM_011694, intron 2 of 8)	13653.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	1.21	3.77	3.99	2.41	3.27	2.82	0.66	2.94	12.0	10.54	12.06	6.89
Merged-chr1-157443808-1	chr1	157443708	157443908	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14760.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.44	0.0	0.57	4.02	4.5	6.9	5.31	5.05	3.74	10.54	5.02	3.76
Merged-chr3-81110915-2	chr3	81110815	81111015	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	74499.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.63	2.26	1.14	2.41	11.86	4.08	2.99	7.35	9.24	2.01	6.53	5.95
Merged-chr17-47212335-2	chr17	47212237	47212437	+	676.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-17893.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	6.06	11.82	9.13	6.44	6.55	3.76	1.99	5.02	4.52	3.51	6.53	1.88
Merged-chr14-101481345-2	chr14	101481240	101481440	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 8 of 18)	HAL1|LINE|L1	127851.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.04	4.28	7.99	2.82	3.68	6.9	3.32	8.02	8.46	6.03	9.04	1.57
Merged-chr9-106373135-2	chr9	106373042	106373242	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	4510.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	6.86	5.79	4.56	1.61	2.45	7.84	1.99	4.51	12.0	8.54	22.11	9.08
Merged-chr9-35063243-2	chr9	35063139	35063339	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	MYSERV6-int|LTR|ERVK	-53489.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.67	4.28	1.14	7.24	3.68	5.02	1.33	6.39	11.21	10.04	5.02	4.7
Merged-chr10-81294630-2	chr10	81294532	81294732	+	676.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	1669.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	8.88	7.04	2.85	1.61	12.27	18.19	3.99	5.97	6.49	13.56	8.04	4.07
Merged-chr17-32275565-1	chr17	32275465	32275665	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	8558.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	10.09	1.51	3.42	4.02	4.91	9.72	5.98	6.7	11.6	4.52	6.53	5.64
Merged-chr6-58770935-1	chr6	58770835	58771035	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60530.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	3.23	4.02	5.13	8.04	5.73	7.53	6.31	5.55	6.88	5.02	7.54	4.7
Merged-chr6-89336430-2	chr6	89336333	89336533	+	676.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008881, intron 10 of 31)	intron (NM_008881, intron 10 of 31)	26180.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.25	6.29	5.13	7.64	4.5	1.25	3.99	6.81	7.08	1.0	15.58	10.34
Merged-chr4-137722892-1	chr4	137722792	137722992	+	676.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081155, intron 18 of 24)	intron (NM_001081155, intron 18 of 24)	-1569.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	6.06	2.52	3.42	1.61	9.0	4.08	1.99	1.57	11.6	3.51	9.04	6.27
Merged-chr4-88726803-3	chr4	88726710	88726910	+	676.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4302.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.85	8.55	7.99	8.85	7.77	8.15	11.29	16.82	11.41	8.03	11.56	5.64
Merged-chr4-148102358-3	chr4	148102345	148102545	+	676.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027426, exon 7 of 7)	3' UTR (NM_027426, exon 7 of 7)	-14381.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	5.65	3.27	3.99	8.85	6.14	3.45	8.64	6.39	3.74	5.52	7.03	5.64
Merged-chr1-92697062-3	chr1	92696952	92697152	+	676.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48211.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	9.69	5.03	2.28	6.84	5.73	4.7	4.65	5.97	13.18	11.05	13.57	7.21
Merged-chr10-122782302-2	chr10	122782196	122782396	+	676.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176919, exon 2 of 9)	exon (NM_176919, exon 2 of 9)	102981.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.81	5.03	5.7	3.22	6.95	2.82	3.32	6.22	16.72	15.57	23.11	12.53
Merged-chr18-36242273-2	chr18	36242173	36242373	+	676.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38889.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	5.25	5.79	0.0	4.83	6.95	7.53	9.3	6.08	10.03	4.02	6.03	8.46
Merged-chr16-51888599-2	chr16	51888497	51888697	+	676.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98690.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	4.04	7.55	21.68	10.46	12.27	5.96	7.64	16.01	10.23	4.52	5.53	5.33
Merged-chr14-118941227-3	chr14	118941076	118941276	+	676.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	3244.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	4.44	3.52	12.55	7.24	7.36	4.39	6.64	9.08	5.9	8.54	7.03	5.95
Merged-chr13-28573553-3	chr13	28573448	28573648	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	137325.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	3.63	4.53	10.27	10.05	6.95	5.02	6.64	7.82	9.44	6.03	11.56	1.57
Merged-chrX-77512367-3	chrX	77512277	77512477	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	1150.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	8.88	8.55	5.7	4.42	6.14	5.96	9.3	6.48	14.55	18.08	10.05	3.76
Merged-chr11-121078121-3	chr11	121078146	121078346	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145373, intron 1 of 5)	RLTR15|LTR|ERVK	2893.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.0	3.77	0.0	7.24	1.64	2.2	1.66	1.74	2.56	3.51	2.51	3.13
Merged-chr8-25103137-3	chr8	25103027	25103227	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155282, intron 1 of 1)	CpG	948.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	14.54	6.29	6.28	9.25	9.0	8.78	4.32	8.8	8.26	5.52	3.01	10.34
Merged-chr5-140411565-1	chr5	140411465	140411665	+	676.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7740.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	7.27	3.27	5.7	4.42	6.55	7.53	3.99	6.98	7.28	1.0	5.02	4.07
Merged-chr5-134491922-1	chr5	134491822	134492022	+	676.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009990, exon 16 of 17)	exon (NM_009990, exon 16 of 17)	-35206.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	5.25	4.02	10.27	4.42	6.55	7.84	4.98	5.16	5.7	2.51	7.03	5.33
Merged-chr16-84605557-1	chr16	84605457	84605657	+	676.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B2|LTR|ERVL	-74232.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	9.29	5.53	17.11	6.44	2.45	4.39	1.33	1.68	10.82	13.05	12.06	5.01
Merged-chr2-12228501-3	chr2	12228420	12228620	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-72726.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	9.69	4.02	13.12	5.63	4.09	5.02	4.98	9.76	10.62	8.54	7.54	5.33
Merged-chr7-16880892-1	chr7	16880792	16880992	+	676.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	5575.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	5.65	8.05	2.28	5.63	6.55	8.78	5.31	5.66	8.85	4.52	18.59	4.39
Merged-chr14-64809938-3	chr14	64809830	64810030	+	676.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	139927.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	9.29	5.28	12.55	7.24	10.64	9.72	7.64	6.5	10.23	6.03	22.11	7.21
Merged-chr17-50571216-3	chr17	50571119	50571319	+	676.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	61672.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	8.88	6.79	9.7	12.47	5.32	9.41	4.32	6.93	19.67	10.04	11.56	6.27
Merged-chr16-91365951-2	chr16	91365847	91366047	+	676.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6836.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.25	10.56	5.13	0.8	7.36	15.37	12.95	7.07	9.83	7.03	8.54	4.39
Merged-chr14-74917892-3	chr14	74917738	74917938	+	676.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	30039.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.85	8.8	4.56	4.42	2.86	6.59	2.66	4.74	3.93	5.02	5.53	8.46
Merged-chr7-121981016-2	chr7	121980925	121981125	+	676.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033318, intron 1 of 16)	intron (NM_001033318, intron 1 of 16)	668.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	3.63	5.53	0.0	3.22	9.0	3.45	4.32	5.13	8.06	8.54	16.08	7.52
Merged-chr12-105967208-2	chr12	105967119	105967319	+	676.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43044.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	10.9	6.54	5.7	8.85	2.05	7.84	6.31	7.01	6.29	8.03	3.52	4.7
Merged-chr14-8108361-2	chr14	8108262	8108462	+	676.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	10151.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	3.23	9.31	3.99	9.25	7.77	5.64	8.97	4.63	7.67	10.54	9.04	3.76
Merged-chr8-75094942-3	chr8	75094912	75095112	+	676.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010442, intron 1 of 4)	ID4_|SINE|ID	1394.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.25	9.31	5.7	2.41	2.45	1.57	4.98	1.21	6.69	10.54	2.51	4.39
Merged-chr6-143361517-3	chr6	143361402	143361602	+	676.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115614.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	8.88	6.54	4.56	21.72	12.68	14.42	7.31	26.36	11.01	8.54	19.6	3.13
Merged-chr8-44938156-2	chr8	44938062	44938262	+	676.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-12046.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	9.29	5.53	9.7	8.85	7.36	10.35	12.62	16.99	5.11	7.03	13.06	2.82
Merged-chr2-29406140-3	chr2	29406039	29406239	+	676.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290490, intron 3 of 5)	RMER4A|LTR|ERVK	27625.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	10.9	10.06	5.7	14.08	4.09	8.15	4.98	7.18	9.05	6.53	5.02	7.21
Merged-chr15-91290707-1	chr15	91290607	91290807	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-98700.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.44	0.5	3.42	5.63	1.64	3.45	5.65	4.04	4.72	10.54	12.56	1.57
Merged-chr18-20745098-1	chr18	20744998	20745198	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	1306.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.23	3.77	4.56	0.0	3.68	5.96	7.31	5.55	2.36	1.51	6.03	3.13
Merged-chr12-35266874-1	chr12	35266774	35266974	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71977.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.63	3.77	1.14	6.03	10.23	9.09	5.65	5.24	0.0	1.51	1.0	0.31
Merged-chr1-144294158-1	chr1	144294058	144294258	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45054.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	1.62	2.01	5.13	5.23	4.09	1.88	6.64	5.41	4.52	2.01	10.05	4.39
Merged-chr4-59467307-1	chr4	59467207	59467407	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28674.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.63	2.52	7.99	2.41	5.73	5.33	7.64	4.12	4.13	1.51	8.04	2.51
Merged-chr8-108580646-1	chr8	108580546	108580746	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	4031.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.46	7.55	13.69	1.61	6.14	2.2	4.98	3.0	4.52	1.0	6.03	4.7
Merged-chr11-46252249-1	chr11	46252149	46252349	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252459, intron 19 of 30)	intron (NM_001252459, intron 19 of 30)	16692.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	6.86	2.52	6.85	4.42	8.59	5.64	3.32	7.57	3.93	5.52	9.04	4.07
Merged-chr3-104901641-2	chr3	104901543	104901743	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253702, intron 11 of 13)	intron (NM_001253702, intron 11 of 13)	37137.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	10.5	0.5	6.28	8.45	2.86	6.9	8.3	12.31	4.13	2.01	6.03	2.19
Merged-chr12-79545240-1	chr12	79545140	79545340	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	247889.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	2.42	2.52	0.57	2.41	4.91	9.41	3.32	6.36	3.93	11.55	5.02	3.45
Merged-chr13-17795335-1	chr13	17795235	17795435	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	9762.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	4.85	1.76	0.0	11.26	4.09	4.39	5.98	4.6	15.14	2.01	12.06	1.88
Merged-chr18-89149316-2	chr18	89149215	89149415	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48112.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	9.69	3.02	7.99	9.65	6.95	2.82	12.29	5.97	12.0	5.02	12.56	1.25
Merged-chr10-80873052-1	chr10	80872952	80873152	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6764.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	9.29	5.03	14.26	7.64	4.5	9.09	7.64	5.75	3.93	3.51	6.53	3.13
Merged-chr15-100449969-1	chr15	100449869	100450069	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19042.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	12.52	1.51	6.85	6.84	3.68	6.59	3.65	6.03	8.85	4.02	5.53	1.25
Merged-chr6-83142649-1	chr6	83142549	83142749	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355525, intron 1 of 11)	intron (NM_001355525, intron 1 of 11)	543.0	NM_001355525	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	5.25	4.28	1.14	3.22	2.05	0.94	4.98	6.59	1.97	3.51	5.02	3.45
Merged-chr7-16264658-2	chr7	16264554	16264754	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	-5114.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	12.11	7.04	14.83	3.22	2.86	7.53	7.97	9.93	5.31	7.53	6.03	3.76
Merged-chr2-61656588-1	chr2	61656488	61656688	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-55106.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	2.83	1.51	0.0	4.02	0.41	1.25	6.31	7.18	2.56	1.0	3.52	4.07
Merged-chr2-168954712-2	chr2	168954604	168954804	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009564, intron 1 of 5)	intron (NM_009564, intron 1 of 5)	883.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	5.65	7.55	14.83	4.83	4.91	5.02	1.0	8.13	8.65	3.51	4.52	3.45
Merged-chr14-52338835-1	chr14	52338735	52338935	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10165.0	NM_015772	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	3.63	5.03	1.71	3.62	8.18	9.72	2.99	6.03	12.78	3.51	6.53	6.89
Merged-chr5-43924091-1	chr5	43923991	43924191	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55282.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.23	4.53	1.14	4.02	0.82	1.57	1.33	2.52	9.64	2.51	12.56	2.82
Merged-chr1-43338068-1	chr1	43337968	43338168	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107683.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	1.21	1.01	11.41	7.24	7.36	2.2	5.65	11.86	11.21	3.51	4.02	1.57
Merged-chr16-89909621-1	chr16	89909521	89909721	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	51206.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	6.46	5.53	3.42	2.41	11.05	6.59	3.32	7.29	8.46	8.54	14.57	2.82
Merged-chr12-8519136-1	chr12	8519036	8519236	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.23	4.02	1.14	3.22	1.64	3.76	4.32	5.52	1.97	6.53	4.52	5.33
Merged-chr11-78807582-1	chr11	78807482	78807682	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-19013.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	8.88	5.53	5.7	7.24	14.32	5.64	4.32	7.77	3.74	3.51	9.04	6.89
Merged-chr15-81123739-1	chr15	81123639	81123839	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	-18692.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	2.83	3.27	4.56	6.03	9.41	0.63	4.65	5.27	6.29	2.51	3.01	1.25
Merged-chr2-21016788-2	chr2	21016704	21016904	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47930.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	3.63	4.53	3.42	5.23	4.09	7.53	4.32	11.52	7.67	15.06	9.55	6.27
Merged-chr10-92841209-1	chr10	92841109	92841309	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-118791.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	1.62	2.01	4.56	5.63	2.05	2.2	6.98	6.06	0.59	0.0	1.0	0.94
Merged-chr5-99246136-1	chr5	99246036	99246236	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	6791.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.85	5.79	3.99	5.63	4.5	8.78	8.3	3.79	4.52	5.02	5.53	6.27
Merged-chr8-26981309-1	chr8	26981209	26981409	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3973.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.25	4.53	7.42	4.83	6.14	5.64	1.0	8.5	7.28	4.02	4.02	5.95
Merged-chr6-143135102-1	chr6	143135002	143135202	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	18829.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	5.65	1.51	5.7	0.8	8.18	0.94	3.32	9.34	7.28	2.01	10.55	5.01
Merged-chr4-102573302-1	chr4	102573202	102573402	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	3242.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.23	2.52	1.14	2.01	4.91	3.14	0.66	2.33	8.46	5.52	6.03	4.39
Merged-chr4-154934142-1	chr4	154934042	154934242	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6065.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.25	2.77	6.28	3.22	1.64	3.45	1.33	1.51	11.01	2.01	6.53	7.52
Merged-chr9-63794293-1	chr9	63794193	63794393	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36299.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	1.76	0.0	0.8	4.5	3.76	5.31	7.35	2.16	0.0	2.01	0.31
Merged-chr10-45051304-3	chr10	45051200	45051400	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15914.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	7.27	5.28	4.56	4.42	4.91	6.27	2.33	7.37	11.41	10.04	12.56	4.7
Merged-chr14-44990683-2	chr14	44990580	44990780	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	2569.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	12.52	9.81	7.99	3.62	7.36	6.27	3.65	3.0	8.85	10.04	10.05	2.51
Merged-chr1-65176489-1	chr1	65176389	65176589	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	RMER15|LTR|ERVL	2653.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	2.83	5.28	0.57	0.8	4.5	5.33	1.99	7.37	2.36	3.51	1.51	1.25
Merged-chr19-55935438-1	chr19	55935338	55935538	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	40117.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.81	12.07	10.27	9.65	2.86	2.51	6.64	0.9	3.93	2.01	3.52	2.51
Merged-chr8-70760374-1	chr8	70760274	70760474	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183170, exon 2 of 5)	exon (NM_183170, exon 2 of 5)	547.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	3.63	6.04	1.71	2.41	7.36	2.82	5.65	4.09	4.52	2.51	3.52	7.21
Merged-chr1-152620066-1	chr1	152619966	152620166	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	5151.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	1.62	2.77	0.0	2.01	2.86	6.9	2.99	5.3	2.95	0.5	3.01	2.51
Merged-chr10-44005403-1	chr10	44005303	44005503	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172393)	promoter-TSS (NM_172393)	-557.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	2.02	4.02	2.28	1.61	3.68	2.51	5.98	6.34	3.93	6.03	4.52	1.25
Merged-chr6-54794590-1	chr6	54794490	54794690	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-22326.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.85	5.03	3.99	6.44	3.68	7.21	4.98	5.89	0.0	2.51	0.0	0.0
Merged-chr12-33389017-2	chr12	33388922	33389122	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131031, intron 1 of 3)	intron (NR_131031, intron 1 of 3)	5738.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	8.88	7.29	3.42	2.41	7.77	9.41	1.33	8.78	10.03	5.52	18.09	3.45
Merged-chr1-39911615-1	chr1	39911515	39911715	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	10702.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	2.83	4.78	2.28	0.8	3.27	5.96	7.64	5.66	2.95	6.03	3.52	5.01
Merged-chr5-129670114-2	chr5	129670029	129670229	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-41.0	NM_172462	22648.0	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	7.27	9.31	1.14	4.02	6.95	13.8	3.65	9.76	8.46	13.56	15.07	9.08
Merged-chr1-134244349-1	chr1	134244249	134244449	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8892.0	NM_001008533	11539.0	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	10.9	5.03	2.85	6.44	2.05	5.33	1.99	3.98	7.87	9.04	10.55	4.7
Merged-chr3-142589089-1	chr3	142588989	142589189	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5758.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	1.62	4.78	5.7	1.61	6.95	4.39	2.66	1.79	11.41	12.05	5.02	3.13
Merged-chr8-71709961-1	chr8	71709861	71710061	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028267, intron 24 of 26)	intron (NR_028267, intron 24 of 26)	-8161.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	4.85	2.77	3.42	3.62	2.86	6.59	1.0	2.05	7.87	6.53	9.04	2.51
Merged-chr2-70945091-1	chr2	70944991	70945191	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73283.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.81	0.25	0.57	1.61	0.41	2.51	1.99	5.5	5.7	3.51	14.07	9.08
Merged-chr16-88478616-1	chr16	88478516	88478716	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28362.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	2.42	1.51	1.14	0.0	6.55	6.59	1.99	5.97	1.57	3.51	5.53	1.88
Merged-chr13-52577329-1	chr13	52577229	52577429	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4104.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	6.06	1.01	2.28	5.23	6.14	1.25	4.98	6.31	7.47	6.03	1.0	2.51
Merged-chr6-124508539-3	chr6	124508418	124508618	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181344, exon 6 of 6)	exon (NM_181344, exon 6 of 6)	-4103.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	9.29	5.79	10.84	6.44	7.36	7.53	3.32	6.9	11.01	16.57	8.54	6.27
Merged-chr16-33883251-2	chr16	33883155	33883355	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 4 of 14)	intron (NM_001145884, intron 4 of 14)	53590.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	1.62	3.27	9.13	12.07	2.05	4.39	5.65	9.08	4.13	1.0	7.54	5.64
Merged-chr6-5097253-1	chr6	5097153	5097353	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	96693.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.42	0.75	5.13	3.22	6.55	4.7	1.33	8.86	4.52	4.02	8.04	2.19
Merged-chr6-31087108-1	chr6	31087008	31087208	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24015.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	1.62	3.27	10.27	3.22	11.45	3.14	4.65	5.3	6.88	2.01	10.05	5.33
Merged-chr1-83746231-1	chr1	83746131	83746331	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-338031.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	6.86	4.78	2.85	6.84	4.09	8.15	1.99	7.54	3.74	2.51	11.56	3.76
Merged-chr17-35209574-2	chr17	35209485	35209685	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4234.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	2.42	4.78	10.84	1.61	1.64	5.33	1.33	4.46	10.62	13.05	7.54	10.34
Merged-chrX-136708199-5	chrX	136708116	136708316	+	675.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356367, intron 1 of 1)	intron (NM_001356367, intron 1 of 1)	234.0	NM_146236	237052.0	Mm.40713	NM_146236	ENSMUSG00000049536	Tceal1	0610011M09Rik|BC011290|P21|SIIR|pp21	transcription elongation factor A (SII)-like 1	protein-coding	3.63	5.53	5.7	2.41	4.5	6.59	8.3	7.79	7.87	8.03	12.56	5.33
Merged-chr1-149943853-3	chr1	149943754	149943954	+	675.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	Lx8|LINE|L1	17436.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	8.08	5.79	10.84	8.45	13.5	4.7	4.98	15.93	10.82	10.04	13.06	6.89
Merged-chr9-50532153-3	chr9	50532047	50532247	+	675.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133217)	TTS (NM_133217)	-3506.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	7.67	7.04	9.13	9.25	11.86	9.09	1.99	6.48	15.14	10.04	12.56	9.08
Merged-chr7-48876731-3	chr7	48876612	48876812	+	675.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	4329.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	5.25	4.28	0.57	8.45	8.18	7.53	3.65	10.88	11.01	9.04	8.04	3.45
Merged-chr11-77604506-3	chr11	77604381	77604581	+	675.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	3334.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	9.29	6.04	5.7	0.8	9.82	8.78	2.33	1.96	10.42	9.54	12.56	6.89
Merged-chr16-58481967-2	chr16	58481856	58482056	+	675.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	41470.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.06	4.78	3.99	8.45	13.5	10.03	7.97	6.5	8.06	13.56	9.04	5.01
Merged-chr17-8842062-2	chr17	8841971	8842171	+	675.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-7914.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	7.67	7.04	5.7	13.67	6.55	4.08	7.97	8.47	8.06	2.01	5.02	7.52
Merged-chr15-36967300-2	chr15	36967175	36967375	+	675.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40127.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	3.23	3.77	1.14	2.41	6.95	8.15	3.99	9.79	5.51	10.04	8.04	7.83
Merged-chr16-5471221-2	chr16	5471109	5471309	+	675.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-215253.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.44	6.29	10.27	10.05	10.23	7.53	4.98	8.24	3.54	3.01	6.53	1.88
Merged-chr15-12323002-3	chr15	12322896	12323096	+	675.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1500.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.65	7.29	13.12	4.83	10.64	5.33	4.98	5.52	7.08	4.02	11.56	1.88
Merged-chr10-30789705-2	chr10	30789592	30789792	+	675.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	13634.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	13.73	7.29	5.7	5.63	9.0	6.59	3.99	9.0	12.78	14.56	9.55	6.58
Merged-chr4-102808440-3	chr4	102808342	102808542	+	675.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	MTD|LTR|ERVL-MaLR	48307.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	7.67	2.77	11.98	12.07	8.59	3.76	8.64	15.03	7.67	9.54	11.56	7.83
Merged-chr11-32217072-2	chr11	32216964	32217164	+	675.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010117, intron 1 of 17)	intron (NM_010117, intron 1 of 17)	5229.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	4.04	1.01	0.0	1.61	14.73	5.64	0.66	6.93	11.6	12.55	18.59	7.83
Merged-chr9-35166322-2	chr9	35166224	35166424	+	675.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	9663.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	6.86	8.55	2.85	5.63	6.14	8.47	2.66	5.69	8.06	8.03	13.06	3.45
Merged-chr17-70992029-2	chr17	70991904	70992104	+	675.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1488.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	8.48	10.56	7.42	2.41	13.09	8.15	12.62	6.73	4.72	3.01	2.51	2.82
Merged-chr9-40991102-2	chr9	40991011	40991211	+	675.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019465, intron 3 of 9)	intron (NM_019465, intron 3 of 9)	13517.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	4.44	4.53	11.41	4.02	5.73	4.7	4.98	10.23	7.28	3.51	8.04	8.14
Merged-chr7-83665274-3	chr7	83665174	83665374	+	675.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 10 of 18)	intron (NM_001360088, intron 10 of 18)	-9779.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.23	8.05	3.99	14.48	8.18	5.64	2.66	6.48	9.64	9.54	11.05	3.45
Merged-chr15-61989345-3	chr15	61989238	61989438	+	675.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177352, intron 2 of 2)	intron (NM_001177352, intron 2 of 2)	3997.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	12.52	4.02	2.28	8.04	5.32	10.03	9.97	6.56	9.24	5.02	10.55	4.7
Merged-chr8-46735711-2	chr8	46735601	46735801	+	675.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	3814.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	7.27	5.53	3.42	8.04	8.59	8.78	4.32	8.19	8.65	6.03	9.04	5.33
Merged-chr3-85601987-2	chr3	85601883	85602083	+	675.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144896, intron 3 of 12)	intron (NM_144896, intron 3 of 12)	27854.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	2.83	4.02	1.14	6.44	6.55	9.09	4.98	6.79	9.83	7.03	10.55	3.76
Merged-chr17-12756050-2	chr17	12755941	12756141	+	675.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13665.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.4	3.52	10.27	6.44	3.27	10.03	9.3	5.94	9.44	7.53	10.55	7.21
Merged-chr11-80508653-2	chr11	80508535	80508735	+	675.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126552, exon 1 of 3)	non-coding (NR_126552, exon 1 of 3)	471.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	4.85	4.02	5.13	2.82	9.41	9.72	4.32	4.82	11.01	7.53	7.54	3.45
Merged-chr4-102585678-2	chr4	102585583	102585783	+	675.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-1875.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	10.5	9.81	10.27	3.22	2.45	6.9	4.65	3.87	6.88	4.02	7.03	1.25
Merged-chr4-154907953-3	chr4	154907874	154908074	+	675.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8931.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	6.86	8.05	8.56	6.03	7.36	9.09	4.65	6.11	12.0	8.54	10.55	3.76
Merged-chr9-46028175-3	chr9	46028075	46028275	+	675.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	15355.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	8.08	4.02	21.68	8.45	14.32	11.29	7.97	16.21	10.23	10.54	31.15	9.4
Merged-chr3-52243842-1	chr3	52243742	52243942	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24495.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.81	1.01	0.57	3.62	5.73	9.41	3.99	9.11	3.34	2.51	8.04	5.33
Merged-chr15-101983748-1	chr15	101983648	101983848	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20594.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	3.23	1.01	0.0	0.8	4.91	2.2	6.64	5.75	3.74	2.01	7.03	4.39
Merged-chr5-90896201-2	chr5	90896097	90896297	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	4952.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.23	7.04	4.56	0.0	4.5	5.02	5.98	0.9	3.74	1.51	1.51	2.19
Merged-chr15-78996799-2	chr15	78996694	78996894	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045746, intron 2 of 2)	intron (NR_045746, intron 2 of 2)	-5429.0	NR_105921	102465577.0		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	4.04	7.55	0.0	6.84	15.55	3.76	6.31	9.62	8.85	2.01	2.01	5.33
Merged-chr12-79182072-1	chr12	79181972	79182172	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021557, intron 6 of 6)	intron (NM_021557, intron 6 of 6)	8889.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	5.65	5.79	3.42	5.63	11.86	10.66	1.0	6.53	5.11	8.54	5.02	2.51
Merged-chr18-3009973-1	chr18	3009873	3010073	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113439.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	7.67	2.26	5.13	3.62	6.14	6.27	2.66	6.34	1.18	0.0	4.52	4.07
Merged-chr15-9955192-2	chr15	9955114	9955314	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-206346.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	7.27	7.55	10.84	7.24	7.36	1.88	2.33	4.46	4.13	0.0	3.52	4.39
Merged-chr19-34080592-1	chr19	34080492	34080692	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027340, intron 7 of 9)	intron (NM_027340, intron 7 of 9)	13234.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	5.65	0.75	2.28	7.24	6.14	1.88	4.98	6.2	2.36	4.02	2.51	7.52
Merged-chr13-91681683-2	chr13	91681580	91681780	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-59841.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	7.67	7.8	15.97	2.41	4.5	4.08	4.65	11.66	13.96	3.51	9.55	6.27
Merged-chr8-104253203-1	chr8	104253103	104253303	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037841, intron 1 of 2)	B3A|SINE|B2	2342.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	6.86	2.77	6.28	2.41	8.59	6.27	1.66	8.16	10.42	8.54	7.03	3.13
Merged-chr8-95333001-1	chr8	95332901	95333101	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133954, intron 1 of 6)	intron (NM_133954, intron 1 of 6)	717.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	6.06	5.53	0.57	3.22	6.95	5.96	2.99	8.36	4.72	4.52	17.08	4.39
Merged-chr11-59515067-1	chr11	59514967	59515167	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8427.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	8.48	4.53	0.0	7.24	9.0	7.84	1.99	5.83	8.06	4.02	19.09	3.45
Merged-chr13-92576868-2	chr13	92576756	92576956	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030237)	promoter-TSS (NM_030237)	-624.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	1.62	1.51	0.0	1.21	4.91	10.03	2.66	3.87	7.47	10.04	14.07	12.22
Merged-chr15-57905985-2	chr15	57905894	57906094	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6205.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	5.65	4.78	3.99	0.0	2.86	10.35	3.99	6.79	3.34	8.03	10.55	9.08
Merged-chr6-54886397-1	chr6	54886297	54886497	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199143, intron 4 of 4)	intron (NM_199143, intron 4 of 4)	69481.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.23	6.79	7.99	3.62	7.36	9.09	5.98	15.81	6.49	4.52	10.55	4.7
Merged-chr3-97609383-2	chr3	97609268	97609468	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026539, intron 1 of 22)	B1_Mm|SINE|Alu	822.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	6.46	10.56	1.14	4.83	7.77	4.7	10.63	2.16	5.11	5.52	7.54	2.51
Merged-chr12-38860327-1	chr12	38860227	38860427	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 10 of 11)	intron (NM_001347379, intron 10 of 11)	76616.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	4.02	0.0	0.8	4.5	4.7	4.32	5.44	0.98	1.0	6.53	0.0
Merged-chr8-90824445-2	chr8	90824339	90824539	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4396.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	14.94	2.26	10.27	6.44	6.55	5.02	2.99	8.13	4.33	5.52	4.52	9.71
Merged-chr18-4345500-1	chr18	4345400	4345600	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	7453.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.63	3.27	2.85	6.03	11.05	11.6	0.33	4.12	7.08	2.01	3.01	6.27
Merged-chr19-43993574-2	chr19	43993460	43993660	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	1.62	2.52	2.28	4.42	4.09	5.64	3.65	4.21	4.52	6.03	15.07	8.46
Merged-chr1-131462785-2	chr1	131462696	131462896	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	64565.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	12.11	7.29	14.83	11.26	8.18	10.66	3.32	6.17	5.9	21.59	9.55	6.58
Merged-chr7-97753532-1	chr7	97753432	97753632	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-15285.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	5.25	5.53	20.54	8.45	8.18	6.9	3.32	9.53	0.59	0.0	0.5	0.63
Merged-chr10-77967219-2	chr10	77967124	77967324	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	2648.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	4.85	5.03	4.56	4.02	8.18	8.78	0.0	4.96	10.23	8.54	8.04	5.64
Merged-chr18-77861981-3	chr18	77861904	77862104	+	675.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-65614.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	4.04	6.79	16.54	11.26	6.95	10.66	13.29	6.2	8.65	10.04	11.56	4.07
Merged-chr2-124617605-3	chr2	124617485	124617685	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	7289.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.06	8.8	5.13	4.02	9.41	7.53	15.61	3.5	6.88	1.51	8.04	6.89
Merged-chr1-91095553-3	chr1	91095431	91095631	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	42087.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.27	8.05	3.42	8.45	5.73	12.86	7.97	11.78	7.28	11.05	8.54	8.77
Merged-chr18-60915942-3	chr18	60915828	60916028	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038499, intron 1 of 1)	MIR|SINE|MIR	3688.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	10.9	5.03	6.28	7.64	6.95	6.27	9.97	10.07	9.64	4.52	6.53	9.4
Merged-chr11-33170679-3	chr11	33170574	33170774	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7468.0	NM_008722	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	10.5	14.34	17.68	9.65	11.05	11.92	4.32	5.21	10.23	9.54	7.03	9.08
Merged-chr8-86807793-2	chr8	86807675	86807875	+	675.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61769.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	10.5	4.78	3.42	8.45	6.95	5.96	6.31	10.07	2.75	4.52	3.01	6.27
Merged-chr2-33643269-2	chr2	33643166	33643366	+	675.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	2073.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	8.08	3.77	3.99	8.45	6.55	10.35	6.31	11.83	9.05	15.57	9.04	7.83
Merged-chr1-85122045-1	chr1	85121945	85122145	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-12192.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	1.62	2.52	11.41	2.41	7.36	6.27	6.98	4.74	2.16	5.52	2.51	4.39
Merged-chr17-5522215-1	chr17	5522115	5522315	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	29615.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.63	1.26	5.7	2.82	9.0	5.33	7.97	5.89	5.9	9.04	9.04	2.19
Merged-chr11-20533403-2	chr11	20533301	20533501	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9852.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.83	4.02	5.7	5.63	10.23	8.47	5.98	4.63	12.78	11.55	13.57	0.94
Merged-chr9-119156450-3	chr9	119156355	119156555	+	675.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146230, intron 2 of 11)	intron (NM_146230, intron 2 of 11)	638.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	9.29	6.29	6.85	5.63	6.14	9.09	2.33	5.44	12.39	7.03	7.03	7.83
Merged-chr18-10776507-1	chr18	10776407	10776607	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144860, intron 11 of 20)	intron (NM_144860, intron 11 of 20)	6469.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	6.06	4.02	4.56	4.83	7.36	9.09	5.31	6.73	6.1	2.51	8.04	6.89
Merged-chr7-133115055-1	chr7	133114955	133115155	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	8428.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	3.63	4.02	5.7	6.84	5.32	7.84	4.32	7.4	7.08	6.03	8.04	5.64
Merged-chr11-87595648-2	chr11	87595552	87595752	+	675.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133215, intron 2 of 18)	CpG	3486.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	16.96	8.05	5.13	8.04	7.77	8.15	9.3	6.11	9.05	11.05	8.04	5.33
Merged-chr3-95666527-1	chr3	95666427	95666627	+	675.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	7806.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	10.9	7.29	11.41	4.83	7.36	8.47	1.66	1.35	5.9	16.57	6.53	3.45
Merged-chr11-58094493-2	chr11	58094386	58094586	+	675.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9484.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	8.48	7.8	20.54	9.25	4.09	6.27	4.32	8.02	6.49	3.51	4.52	4.7
Merged-chr10-18996579-2	chr10	18996465	18996665	+	675.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.27	7.8	1.14	6.03	8.59	6.9	0.66	6.0	13.37	4.02	5.53	4.7
Merged-chr3-51360352-2	chr3	51360240	51360440	+	675.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-19696.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	9.69	16.35	29.09	9.25	2.05	1.25	1.33	2.27	11.21	14.06	10.05	9.08
Merged-chr7-44384646-3	chr7	44384559	44384759	+	675.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016663, intron 1 of 10)	intron (NM_016663, intron 1 of 10)	533.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	8.48	6.79	3.42	13.27	7.77	9.09	10.3	3.73	7.08	6.03	16.08	10.34
Merged-chr9-32138833-3	chr9	32138751	32138951	+	675.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 2 of 21)	L2a|LINE|L2	22715.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	8.08	12.07	10.27	18.1	5.73	4.39	7.64	17.61	9.44	9.54	8.54	6.27
Merged-chr2-157373926-3	chr2	157373867	157374067	+	675.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	intron (NM_026968, intron 1 of 2)	6373.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	9.29	7.55	12.55	2.82	6.95	8.47	4.65	11.16	7.28	9.04	6.53	6.58
Merged-chr13-113914448-3	chr13	113914378	113914578	+	675.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119970.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	8.48	3.52	4.56	13.27	5.73	3.76	6.64	7.51	8.85	5.02	5.02	6.89
Merged-chr15-81989888-2	chr15	81989809	81990009	+	675.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9369.0	NM_025503	66346.0	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	7.67	4.02	4.56	13.27	6.55	11.92	4.65	7.18	9.05	14.56	10.55	10.65
Merged-chr9-71959711-2	chr9	71959613	71959813	+	675.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-63617.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	10.5	3.77	2.28	11.26	8.59	5.96	6.98	6.5	6.1	7.53	7.03	5.33
Merged-chr5-115333882-3	chr5	115333772	115333972	+	675.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025573)	TTS (NM_025573)	6695.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	8.88	6.29	16.54	8.45	11.86	9.41	15.28	16.93	8.65	5.02	12.56	12.84
Merged-chr19-26635721-3	chr19	26635623	26635823	+	675.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 4 of 32)	intron (NM_011416, intron 4 of 32)	30563.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.86	6.04	10.27	6.84	6.14	15.99	10.63	13.37	8.26	10.04	20.6	5.64
Merged-chr8-90841332-1	chr8	90841232	90841432	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12497.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.44	4.02	6.28	4.02	8.18	10.98	1.33	5.58	3.93	5.52	3.52	2.19
Merged-chr3-105039073-1	chr3	105038973	105039173	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	13880.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	8.88	4.02	4.56	2.82	3.27	2.2	1.33	1.91	6.29	3.01	5.53	9.71
Merged-chr15-35293137-3	chr15	35293068	35293268	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2944.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	8.08	6.79	9.13	12.07	11.05	7.53	13.29	8.66	8.06	11.55	11.05	5.64
Merged-chr5-76244594-1	chr5	76244494	76244694	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007715, intron 11 of 22)	intron (NM_007715, intron 11 of 22)	58908.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	5.25	1.01	2.28	1.61	0.82	5.33	6.31	5.64	5.9	1.0	3.01	2.19
Merged-chr17-79569836-2	chr17	79569724	79569924	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45076.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	6.46	2.77	7.99	3.22	3.27	5.02	0.33	7.23	9.44	10.04	10.55	5.01
Merged-chr9-55250589-2	chr9	55250494	55250694	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	33031.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.04	5.53	6.28	9.25	3.68	5.33	9.63	7.26	6.49	9.04	7.03	7.21
Merged-chr8-84783019-1	chr8	84782919	84783119	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 1 of 9)	intron (NM_001081982, intron 1 of 9)	-8650.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	1.62	3.27	8.56	8.04	4.5	3.76	3.65	4.29	0.0	0.5	0.0	0.31
Merged-chr3-95660288-1	chr3	95660188	95660388	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008562, intron 2 of 2)	intron (NM_008562, intron 2 of 2)	1567.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.08	7.04	3.42	2.01	4.09	9.09	1.99	3.17	11.8	9.54	4.02	3.13
Merged-chr9-64086749-3	chr9	64086675	64086875	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6014.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	6.86	12.32	6.85	5.23	4.91	11.29	6.64	3.48	13.37	3.51	8.54	10.02
Merged-chr15-6415594-1	chr15	6415494	6415694	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	28846.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.81	3.02	4.56	4.02	6.55	7.21	2.99	7.51	4.13	3.51	4.52	0.94
Merged-chr9-34488770-2	chr9	34488715	34488915	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026324)	promoter-TSS (NM_026324)	84.0	NM_001190914	67703.0	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kirre like nephrin family adhesion molecule 3	protein-coding	4.85	4.28	3.99	6.84	1.23	2.2	6.98	5.89	0.98	1.51	5.02	0.31
Merged-chr8-35725388-1	chr8	35725288	35725488	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101171.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.81	3.02	2.28	2.41	2.86	0.63	1.66	2.19	14.36	6.53	12.06	5.33
Merged-chr17-26547953-1	chr17	26547853	26548053	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13559.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	1.62	5.03	7.42	8.04	6.55	2.82	5.98	8.27	8.26	3.01	5.02	3.13
Merged-chr11-103248888-2	chr11	103248773	103248973	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	18528.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	9.29	6.54	3.42	4.02	2.45	5.33	4.98	4.71	6.88	4.02	4.52	3.13
Merged-chr5-3195622-2	chr5	3195510	3195710	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148283.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.02	2.52	4.56	8.04	2.05	3.14	4.65	5.8	12.39	7.03	7.54	7.52
Merged-chr1-155108077-1	chr1	155107977	155108177	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8441.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	1.62	5.53	3.42	0.8	1.64	4.7	2.99	4.82	4.52	3.01	6.53	1.25
Merged-chr6-39257768-1	chr6	39257668	39257868	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50995.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.5	1.71	1.61	3.68	8.47	7.97	3.14	3.54	5.02	7.03	2.82
Merged-chr17-87249175-3	chr17	87249066	87249266	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16781.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.27	5.53	13.69	0.8	5.32	3.76	5.65	5.3	6.29	0.5	2.01	8.46
Merged-chr2-91968178-1	chr2	91968078	91968278	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4615.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	1.62	1.51	0.57	3.22	7.77	4.7	1.66	5.47	4.33	1.51	6.03	5.33
Merged-chr15-79139834-1	chr15	79139734	79139934	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138581, intron 2 of 6)	B2_Mm2|SINE|B2	1417.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	6.86	2.77	2.28	0.8	0.41	5.33	0.0	1.57	13.18	22.59	13.06	7.83
Merged-chr8-33390338-1	chr8	33390238	33390438	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098233, intron 1 of 1)	intron (NM_001098233, intron 1 of 1)	4013.0	NM_001098233	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	0.81	1.01	0.0	0.0	0.82	0.94	1.33	0.56	11.6	4.52	11.05	11.59
Merged-chr9-56324753-2	chr9	56324647	56324847	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	93303.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	8.88	4.53	9.13	12.07	9.41	8.47	7.64	8.5	7.28	11.05	10.05	5.95
Merged-chr2-13417321-1	chr2	13417221	13417421	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	L3|LINE|CR1	74555.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	2.83	2.26	5.7	1.61	3.68	5.64	7.64	5.38	4.52	5.02	4.02	1.57
Merged-chr15-100714706-1	chr15	100714606	100714806	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161768, intron 3 of 11)	intron (NM_001161768, intron 3 of 11)	5771.0	NM_001161768	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	1.21	2.26	1.14	2.82	1.64	4.08	4.32	5.61	3.74	2.01	1.0	3.13
Merged-chr19-55744220-1	chr19	55744120	55744320	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	2410.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.04	5.03	2.85	2.82	8.18	3.14	10.3	3.73	4.52	6.53	4.02	4.07
Merged-chr19-37515083-1	chr19	37514983	37515183	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35335.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.4	3.27	10.84	6.84	4.09	3.76	7.31	5.92	1.97	12.55	5.02	0.94
Merged-chr2-71660860-2	chr2	71660756	71660956	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-58561.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	7.27	2.77	9.13	8.04	7.36	6.59	6.98	5.97	9.44	4.52	10.55	3.45
Merged-chr8-70615189-1	chr8	70615089	70615289	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1655.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	1.21	2.01	7.99	8.04	6.55	1.88	1.66	1.07	7.28	5.52	3.01	8.14
Merged-chr11-60698982-1	chr11	60698882	60699082	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-708.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	7.67	7.29	6.85	4.02	9.41	3.14	3.32	4.82	2.36	13.05	9.55	2.82
Merged-chr1-150375529-1	chr1	150375429	150375629	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145511, exon 10 of 14)	exon (NM_145511, exon 10 of 14)	-17309.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	2.42	0.75	1.14	2.41	3.68	3.45	6.31	6.5	0.0	1.51	0.0	0.0
Merged-chr16-44058896-2	chr16	44058783	44058983	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16875.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	6.06	7.55	7.99	4.83	7.77	9.41	8.97	10.99	7.28	9.04	5.53	4.39
Merged-chr4-89488035-1	chr4	89487935	89488135	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-177003.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.4	0.75	1.14	0.0	3.27	5.96	2.33	6.48	4.52	3.01	1.0	2.51
Merged-chr14-73041714-1	chr14	73041614	73041814	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162412, intron 2 of 4)	intron (NM_001162412, intron 2 of 4)	7400.0	NM_133720	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	3.63	4.28	0.0	7.24	1.23	5.64	7.64	4.79	2.95	3.51	8.04	2.19
Merged-chr3-142530744-1	chr3	142530644	142530844	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	408.0	NM_145545	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	11.71	9.56	4.56	12.87	2.86	10.66	3.99	5.24	8.65	8.54	7.03	3.76
Merged-chr10-44427605-2	chr10	44427503	44427703	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31145.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.85	7.29	13.12	7.24	2.86	3.14	1.33	2.5	15.93	2.51	8.54	7.83
Merged-chr7-49198012-1	chr7	49197912	49198112	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-35854.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	1.62	0.0	0.0	0.0	0.41	1.88	5.31	8.05	1.77	2.51	3.52	10.96
Merged-chr11-76894281-1	chr11	76894181	76894381	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10264.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.81	5.79	9.13	11.26	11.45	9.72	1.99	5.38	4.13	3.01	3.52	5.33
Merged-chr3-145157053-1	chr3	145156953	145157153	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38453.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	4.85	2.77	2.85	6.03	2.05	2.2	4.65	4.74	1.38	3.51	4.52	2.82
Merged-chr11-50149744-3	chr11	50149552	50149752	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029745, intron 6 of 20)	intron (NM_029745, intron 6 of 20)	18292.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	2.42	7.04	2.85	2.82	7.77	4.39	3.65	8.24	4.13	4.52	7.54	3.45
Merged-chr19-16156117-1	chr19	16156017	16156217	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-7981.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	2.42	1.01	2.28	5.23	2.45	5.02	5.31	4.88	2.95	3.01	7.54	2.19
Merged-chr9-77689385-1	chr9	77689285	77689485	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52653.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	7.27	1.26	1.14	10.05	6.14	6.27	4.65	6.76	5.51	4.52	4.02	1.88
Merged-chr8-110075633-1	chr8	110075533	110075733	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4101.0	NM_175480	234725.0	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.81	1.76	4.56	3.22	7.36	6.27	4.32	7.35	1.57	1.0	2.01	4.07
Merged-chr18-4763957-1	chr18	4763857	4764057	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-48529.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.23	4.02	11.98	11.26	3.68	1.88	1.99	2.61	2.95	1.51	1.51	4.7
Merged-chr4-34922251-1	chr4	34922151	34922351	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10770.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	2.02	2.01	1.14	4.02	3.27	5.96	3.65	4.32	3.34	14.06	3.52	1.88
Merged-chr12-24675525-1	chr12	24675425	24675625	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004455, intron 1 of 4)	intron (NM_001004455, intron 1 of 4)	6270.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	5.65	5.28	2.85	0.4	4.91	7.21	1.99	4.46	6.69	6.53	8.54	4.7
Merged-chr2-6220334-2	chr2	6220243	6220443	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-7349.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	6.86	4.53	4.56	4.83	2.86	6.27	1.0	4.07	9.64	12.05	14.57	4.7
Merged-chr7-143007538-1	chr7	143007438	143007638	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	1879.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.63	6.04	9.13	0.0	0.41	2.82	2.99	1.68	11.8	10.54	10.55	8.77
Merged-chr15-59822315-1	chr15	59822215	59822415	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27356.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.44	3.27	5.7	6.44	4.5	3.45	3.32	8.52	10.03	2.01	6.53	6.58
Merged-chr7-106814006-1	chr7	106813906	106814106	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360747)	promoter-TSS (NM_001360747)	-123.0	NM_028910	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	2.83	1.51	12.55	3.62	1.23	0.0	5.31	7.91	3.74	5.52	3.01	0.63
Merged-chr16-44717053-1	chr16	44716953	44717153	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7248.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	3.23	3.77	6.85	2.01	4.91	5.02	5.98	9.9	3.93	0.5	7.54	7.52
Merged-chr16-30602183-1	chr16	30602083	30602283	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_177632, exon 1 of 1)	3' UTR (NM_177632, exon 1 of 1)	2460.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	12.11	8.55	13.12	2.82	3.68	11.29	1.33	3.39	7.08	8.54	4.52	2.51
Merged-chr11-20142729-1	chr11	20142629	20142829	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29778.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	7.67	4.28	2.85	4.02	5.73	4.7	2.66	5.69	1.18	1.0	0.0	0.94
Merged-chr6-115712393-1	chr6	115712293	115712493	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-35758.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	7.67	3.27	5.7	2.41	3.27	3.45	0.33	2.75	6.29	4.52	10.55	5.64
Merged-chr1-30779771-1	chr1	30779671	30779871	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	83485.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	3.63	0.5	0.0	0.0	2.45	5.96	3.65	7.09	1.18	2.51	4.52	4.07
Merged-chr10-85968268-3	chr10	85968195	85968395	+	674.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-10502.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	8.88	9.31	3.99	0.8	7.36	9.09	3.99	5.36	5.7	5.02	12.56	7.52
Merged-chr1-156571669-3	chr1	156571564	156571764	+	674.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	12877.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.25	9.56	6.85	6.44	1.64	5.33	7.97	6.93	14.16	14.06	10.55	14.1
Merged-chr18-39612151-3	chr18	39612038	39612238	+	674.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124893.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.23	9.81	7.42	11.66	5.73	5.33	5.31	11.94	12.39	2.51	11.05	6.27
Merged-chr14-25452903-2	chr14	25452813	25453013	+	674.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6272.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	9.29	1.26	7.99	7.24	10.64	0.31	7.97	7.79	6.49	0.5	5.53	4.07
Merged-chr12-34674418-2	chr12	34674314	34674514	+	674.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	B4|SINE|B4	-145525.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.02	4.02	0.0	2.82	12.68	9.41	5.31	4.15	23.6	12.05	10.05	13.16
Merged-chr12-30266040-2	chr12	30265942	30266142	+	674.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	107333.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	2.42	4.28	9.7	10.05	5.73	6.27	9.63	12.28	3.74	4.52	2.51	4.39
Merged-chr15-99596373-3	chr15	99596279	99596479	+	674.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4821.0	NM_175087	11831.0	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	6.06	6.79	0.57	2.82	1.64	2.51	2.66	1.4	3.34	8.03	3.52	1.57
Merged-chr8-61643415-3	chr8	61643329	61643529	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-52260.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.46	5.03	0.0	4.83	9.0	5.33	2.99	8.02	8.46	3.51	16.58	3.76
Merged-chr9-45829333-3	chr9	45829244	45829444	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-706.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	6.06	8.3	7.42	7.24	11.86	5.96	3.32	6.67	18.29	17.07	8.04	8.46
Merged-chr10-79812437-3	chr10	79812320	79812520	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023128, intron 6 of 8)	intron (NM_023128, intron 6 of 8)	-8601.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	9.29	5.03	1.14	6.44	3.27	8.78	2.99	5.94	14.36	10.54	15.07	3.76
Merged-chr17-84329655-3	chr17	84329553	84329753	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	136555.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	8.48	10.82	11.41	4.02	17.59	20.7	8.3	3.25	8.85	7.53	9.04	7.52
Merged-chr15-73613987-3	chr15	73613881	73614081	+	674.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	B1F1|SINE|Alu	3343.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.65	6.54	11.98	13.67	6.55	8.47	6.64	17.07	9.64	12.55	13.06	3.45
Merged-chr16-24027577-2	chr16	24027473	24027673	+	674.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38721.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	11.31	8.05	17.11	6.03	6.14	9.09	1.33	2.64	6.1	6.53	6.53	4.7
Merged-chr15-81057899-2	chr15	81057788	81057988	+	674.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	G-rich|Low_complexity|Low_complexity	47159.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.23	5.53	4.56	0.8	4.09	9.72	2.33	6.39	11.6	3.51	9.55	6.89
Merged-chr5-135460979-2	chr5	135460897	135461097	+	674.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	-66451.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.06	4.02	2.28	2.41	8.18	5.64	5.98	8.21	7.67	6.03	5.53	7.21
Merged-chr2-13396207-2	chr2	13396117	13396317	+	674.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 28 of 66)	intron (NM_001081084, intron 28 of 66)	95659.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	14.54	6.79	2.28	6.44	9.0	14.11	4.98	7.96	8.85	7.03	3.52	1.88
Merged-chr1-57429950-3	chr1	57429859	57430059	+	674.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23285.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	5.25	4.78	11.41	7.64	9.0	13.48	8.64	16.07	8.85	7.53	9.04	6.27
Merged-chr7-101503568-3	chr7	101503472	101503672	+	674.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008548, intron 14 of 30)	intron (NM_001008548, intron 14 of 30)	28196.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	17.36	6.29	9.13	5.63	6.55	7.84	4.65	6.14	12.78	11.55	10.05	8.14
Merged-chr9-22814981-1	chr9	22814881	22815081	+	674.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	339266.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.63	1.51	6.28	2.82	2.45	6.59	6.31	9.14	2.16	3.51	2.01	8.14
Merged-chr13-111818450-1	chr13	111818350	111818550	+	674.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9457.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.81	0.5	0.0	0.0	6.55	4.39	1.33	5.69	2.36	0.0	0.0	1.57
Merged-chr9-61907147-2	chr9	61907049	61907249	+	674.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7361.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	10.5	2.01	0.0	3.62	7.36	11.6	2.33	4.32	10.62	15.57	8.54	9.71
Merged-chr2-59244562-2	chr2	59244470	59244670	+	674.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	83720.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.04	4.28	13.12	8.04	7.36	10.35	8.3	11.47	10.23	2.51	10.55	3.45
Merged-chr9-62876302-3	chr9	62876181	62876381	+	674.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001102468)	TTS (NM_001102468)	-14257.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	8.48	6.04	11.98	7.24	2.45	7.53	8.3	5.58	3.93	5.52	6.03	5.01
Merged-chr11-46215512-3	chr11	46215454	46215654	+	674.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 26 of 30)	MER20|DNA|hAT-Charlie	-20003.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	4.85	7.04	4.56	0.4	5.32	8.15	3.99	4.99	9.05	0.5	12.06	6.27
Merged-chr11-78382855-2	chr11	78382750	78382950	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	3758.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	8.08	14.09	11.41	4.02	9.0	19.44	12.62	5.44	5.7	4.52	2.01	0.63
Merged-chr11-50359742-1	chr11	50359642	50359842	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1863.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	12.11	3.27	1.14	7.64	6.95	6.9	5.31	6.62	2.95	7.53	7.54	4.39
Merged-chr13-113605393-2	chr13	113605359	113605559	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	13105.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.27	4.78	0.0	0.8	2.86	17.25	2.99	1.6	2.75	4.52	0.5	2.51
Merged-chr10-84714016-1	chr10	84713916	84714116	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027423, intron 24 of 27)	MIR|SINE|MIR	-42032.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.5	0.0	0.0	11.05	8.15	1.0	8.16	2.16	2.51	2.51	2.51
Merged-chr15-7073465-2	chr15	7073374	7073574	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56098.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.23	2.77	5.7	5.63	0.82	8.15	1.99	5.86	10.62	3.51	17.08	10.02
Merged-chr5-64866849-1	chr5	64866749	64866949	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63326.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.02	2.52	3.99	4.02	5.73	6.27	1.33	6.39	7.08	5.02	9.55	6.58
Merged-chr11-117094303-2	chr11	117094188	117094388	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16940.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	4.04	7.55	5.7	1.61	3.27	12.54	9.63	5.72	6.49	5.02	8.54	9.4
Merged-chr15-76537827-1	chr15	76537727	76537927	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013909, intron 2 of 8)	intron (NM_013909, intron 2 of 8)	919.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.0	5.03	1.71	8.45	2.05	6.59	5.65	5.33	5.51	6.53	7.54	7.21
Merged-chr3-55673414-1	chr3	55673314	55673514	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-109096.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	4.04	3.02	1.14	2.01	5.73	6.59	5.65	5.55	1.77	3.51	1.51	2.51
Merged-chr11-20420071-1	chr11	20419971	20420171	+	674.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-87358.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	1.26	0.57	0.8	2.45	4.7	1.0	1.23	12.19	3.51	15.58	6.89
Merged-chr10-98754474-2	chr10	98754379	98754579	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-160163.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.88	6.54	6.85	9.25	10.23	11.6	8.64	9.06	7.47	3.01	6.03	2.19
Merged-chr13-109907785-1	chr13	109907685	109907885	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	3976.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.81	4.02	0.0	4.02	7.36	3.45	6.31	6.73	4.13	1.51	0.0	0.63
Merged-chr8-46547448-2	chr8	46547352	46547552	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4617.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	8.48	1.76	4.56	9.65	6.95	5.96	4.32	9.39	9.05	4.02	12.56	11.28
Merged-chr6-59219953-1	chr6	59219853	59220053	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11083.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	1.21	5.53	3.42	19.71	6.14	3.76	4.65	6.7	2.95	3.51	11.56	4.39
Merged-chr14-117786069-1	chr14	117785969	117786169	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	167778.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.81	3.27	2.28	3.22	4.09	5.33	4.65	9.67	1.97	4.02	1.0	0.63
Merged-chr1-72214706-1	chr1	72214606	72214806	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2392.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	4.44	2.52	3.99	4.02	2.05	5.96	3.65	6.2	1.57	4.02	6.53	1.25
Merged-chr7-79499884-1	chr7	79499784	79499984	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040311)	promoter-TSS (NR_040311)	-142.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	1.21	3.02	4.56	2.41	4.91	7.84	4.32	7.68	5.7	6.53	4.02	0.94
Merged-chr6-13840006-1	chr6	13839906	13840106	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001330666)	promoter-TSS (NM_001330666)	-64.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	3.23	2.01	1.71	2.41	8.18	6.9	1.66	5.1	4.72	6.53	0.5	3.76
Merged-chr4-149706177-3	chr4	149706118	149706318	+	674.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4589.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.46	6.04	2.28	2.41	7.36	9.09	5.98	4.96	13.96	14.06	18.59	5.95
Merged-chr17-48118803-3	chr17	48118722	48118922	+	674.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27485.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	6.46	6.54	7.42	8.45	7.77	10.66	11.29	14.97	7.08	10.54	10.55	6.89
Merged-chr16-94239794-3	chr16	94239676	94239876	+	674.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	50515.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	12.92	4.28	11.41	2.41	10.64	8.15	4.32	5.61	9.05	6.53	11.56	6.58
Merged-chr4-47311648-3	chr4	47311556	47311756	+	674.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 39 of 39)	intron (NM_009928, intron 39 of 39)	-41566.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.06	8.55	3.99	8.04	15.14	8.47	4.65	7.99	11.6	13.05	14.07	6.58
Merged-chr7-45452971-2	chr7	45452870	45453070	+	674.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030678, intron 14 of 15)	B1_Mus1|SINE|Alu	6916.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	10.9	5.79	2.85	10.46	9.0	6.9	3.32	1.99	5.7	3.01	2.01	6.27
Merged-chr4-132532725-2	chr4	132532592	132532792	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007512, intron 3 of 3)	intron (NM_007512, intron 3 of 3)	2722.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	8.08	2.52	0.57	2.82	7.36	5.33	1.0	5.36	9.24	8.54	2.51	4.07
Merged-chr1-4769997-2	chr1	4769881	4770081	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15745.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	4.85	5.03	5.7	0.8	6.55	6.59	6.98	7.74	8.85	8.03	9.04	1.57
Merged-chr15-13171341-2	chr15	13171249	13171449	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	2326.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	5.65	6.54	4.56	0.0	9.82	20.38	16.61	5.05	16.52	2.01	9.04	4.39
Merged-chr6-136967264-2	chr6	136967167	136967367	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12744.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.62	2.26	2.85	0.8	6.95	2.82	3.99	6.84	12.59	8.03	12.56	6.89
Merged-chr10-23840695-1	chr10	23840595	23840795	+	674.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10767.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	4.44	5.03	1.71	4.83	1.64	2.2	2.33	11.16	11.21	6.53	7.54	7.52
Merged-chrX-12673203-2	chrX	12673123	12673323	+	674.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175141, intron 1 of 6)	intron (NM_175141, intron 1 of 6)	416.0	NM_175141	69155.0	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	5.65	3.27	2.28	2.41	5.73	8.78	4.98	6.28	10.42	10.04	9.04	2.82
Merged-chr11-86996549-2	chr11	86996441	86996641	+	674.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2779.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.46	6.54	7.42	8.04	12.68	5.96	3.32	9.0	7.47	12.05	13.06	9.08
Merged-chr7-68113373-3	chr7	68113275	68113475	+	674.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	150858.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	9.29	4.02	9.13	8.04	4.09	10.35	6.98	10.21	5.9	4.02	15.58	6.58
Merged-chr1-36059007-3	chr1	36058898	36059098	+	674.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-9402.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.27	7.29	18.83	2.41	8.59	4.7	8.3	17.94	7.28	10.04	11.56	9.4
Merged-chr7-81454469-2	chr7	81454369	81454569	+	674.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252526, intron 1 of 11)	CpG	289.0	NM_001252525	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	3.63	5.03	3.99	0.8	4.5	3.76	5.65	5.5	4.52	7.53	4.52	5.95
Merged-chr8-47906303-2	chr8	47906212	47906412	+	674.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	81830.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	4.04	1.01	10.84	8.04	6.95	9.09	6.31	6.48	2.95	2.01	8.04	0.94
Merged-chr1-179232234-3	chr1	179232144	179232344	+	674.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285797.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	10.09	9.06	16.54	6.44	4.91	3.45	1.0	8.1	8.85	13.56	10.05	10.34
Merged-chr9-113745576-3	chr9	113745450	113745650	+	674.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	4077.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	8.48	4.53	8.56	8.85	13.5	7.84	3.65	15.87	8.85	9.04	4.52	6.58
Merged-chr13-92274011-3	chr13	92273907	92274107	+	674.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010829, exon 15 of 24)	exon (NM_010829, exon 15 of 24)	-80776.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	10.9	4.78	10.27	7.24	8.18	4.7	7.31	9.2	11.8	3.51	13.06	3.76
Merged-chr17-31119602-3	chr17	31119524	31119724	+	674.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9987.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	7.67	5.79	3.42	6.84	12.68	4.7	9.63	4.51	12.78	20.08	14.07	6.58
Merged-chr17-13739035-3	chr17	13738886	13739086	+	674.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-21555.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	4.44	5.53	2.85	8.45	8.18	4.39	5.31	4.91	7.28	2.51	4.02	7.52
Merged-chr11-110373251-3	chr11	110373138	110373338	+	674.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1b|LINE|L1	-25864.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	10.5	3.52	5.7	7.24	6.55	9.72	2.66	7.71	15.74	7.03	12.06	7.83
Merged-chr12-78859015-3	chr12	78858900	78859100	+	674.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023721, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	2638.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	6.86	5.28	5.7	10.46	10.64	5.33	4.65	8.36	7.28	4.02	7.03	6.58
Merged-chr10-94553288-1	chr10	94553188	94553388	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	2368.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.65	0.5	3.42	10.86	6.14	6.59	4.98	6.06	3.93	5.52	2.51	5.95
Merged-chr1-36065487-1	chr1	36065387	36065587	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2913.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.42	4.78	4.56	7.24	4.91	9.09	9.3	6.03	7.87	6.53	17.08	4.7
Merged-chr18-37518356-1	chr18	37518256	37518456	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053147)	promoter-TSS (NM_053147)	3.0	NM_053147	93893.0	Mm.348054	NM_053147	ENSMUSG00000073591	Pcdhb22	Pcdhb15|PcdhbV	protocadherin beta 22	protein-coding	6.06	1.76	3.99	2.82	1.64	2.82	4.32	7.32	0.79	1.51	3.01	4.39
Merged-chr2-31024841-3	chr2	31024737	31024937	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42558.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	7.67	5.03	9.13	4.42	7.36	8.15	2.33	5.07	12.0	12.05	4.02	4.07
Merged-chr4-94900907-2	chr4	94900812	94901012	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27931.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	5.65	12.83	0.0	14.48	5.32	5.33	1.66	5.78	8.06	3.51	7.03	2.51
Merged-chr13-117220803-2	chr13	117220756	117220956	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010330, exon 1 of 9)	exon (NM_010330, exon 1 of 9)	283.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	10.09	6.79	3.99	4.83	4.5	7.84	11.96	6.62	4.52	7.53	6.03	4.39
Merged-chr13-48842013-1	chr13	48841913	48842113	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	28872.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	4.04	1.76	5.7	4.02	2.45	10.03	3.32	6.36	4.72	2.51	3.01	1.25
Merged-chr13-103869081-1	chr13	103868981	103869181	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 4 of 26)	intron (NM_001005868, intron 4 of 26)	51505.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.85	2.01	5.7	8.04	4.09	4.39	2.99	9.0	12.0	12.05	8.54	3.45
Merged-chr14-65968492-2	chr14	65968387	65968587	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013492)	promoter-TSS (NM_013492)	4.0	NM_013492	12759.0	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	9.69	7.55	0.0	0.8	0.41	1.88	1.33	1.15	9.64	10.54	13.57	2.82
Merged-chr9-84343863-2	chr9	84343763	84343963	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	395082.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	8.08	6.54	5.7	4.02	3.68	7.53	2.66	9.36	5.11	11.05	15.58	6.27
Merged-chr9-66896254-2	chr9	66896146	66896346	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23459.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.65	8.8	11.98	8.45	7.36	5.02	2.66	6.84	6.1	2.01	8.04	7.21
Merged-chr1-170854422-1	chr1	170854322	170854522	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 2 of 15)	RMER17A|LTR|ERVK	13349.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.81	3.27	0.0	2.41	5.73	5.64	4.65	1.18	9.05	11.55	4.52	4.39
Merged-chr5-146706154-1	chr5	146706054	146706254	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88802.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.63	2.77	1.14	6.03	5.73	7.53	1.33	5.8	6.88	3.01	6.03	1.88
Merged-chr16-97778828-1	chr16	97778728	97778928	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15073.0	NM_023663	72388.0	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	4.85	2.77	9.13	1.61	2.05	3.45	6.98	6.0	4.92	1.51	5.53	5.33
Merged-chr10-82083593-1	chr10	82083493	82083693	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35466.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	2.83	3.27	10.84	4.83	10.23	6.27	1.33	1.54	11.41	8.54	12.06	8.46
Merged-chr5-40953113-1	chr5	40953013	40953213	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	754578.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	2.52	4.56	6.84	1.23	5.33	3.65	3.79	10.62	3.51	9.04	5.01
Merged-chr7-30244625-1	chr7	30244525	30244725	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152437, intron 22 of 32)	intron (NR_152437, intron 22 of 32)	-7860.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	2.42	0.75	3.42	1.61	10.23	2.82	4.65	5.41	2.36	1.51	1.0	1.57
Merged-chr1-173941757-1	chr1	173941657	173941857	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	735.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	1.62	1.01	3.42	4.02	0.41	0.0	0.0	0.0	12.0	12.55	9.55	8.46
Merged-chrY-90800413-1	chrY	90800313	90800513	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	14971.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.81	1.76	0.0	0.0	0.0	0.63	1.99	0.53	9.83	5.52	6.53	10.96
Merged-chr18-32970400-1	chr18	32970300	32970500	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009793, intron 1 of 10)	intron (NM_009793, intron 1 of 10)	31359.0	NM_009793	12326.0	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	9.69	7.55	11.41	3.22	1.64	0.0	0.66	0.48	2.95	0.0	1.0	0.0
Merged-chr7-126645862-1	chr7	126645762	126645962	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3447.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	2.42	7.04	0.0	1.61	10.23	8.47	1.66	4.79	9.44	10.54	7.03	2.82
Merged-chr5-105584172-1	chr5	105584072	105584272	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	64701.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.23	0.75	6.85	2.82	2.05	4.39	5.65	5.02	4.33	2.01	4.52	0.94
Merged-chr6-71273908-1	chr6	71273808	71274008	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	1889.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	3.63	6.04	6.28	0.0	5.73	17.87	0.66	2.58	9.64	17.07	10.05	3.76
Merged-chr17-80756230-1	chr17	80756130	80756330	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-28205.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	15.34	8.05	2.85	12.07	3.27	2.2	2.33	1.79	6.49	4.02	9.55	6.27
Merged-chr10-127064229-1	chr10	127064129	127064329	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009870, exon 2 of 8)	5' UTR (NM_009870, exon 2 of 8)	694.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	3.63	5.53	1.71	5.23	6.55	9.09	6.64	7.79	7.28	1.0	9.55	12.84
Merged-chr14-9401045-1	chr14	9400945	9401145	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-483050.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.63	4.02	0.0	0.8	6.95	7.53	1.33	7.63	4.13	5.52	8.04	1.57
Merged-chr1-153910031-1	chr1	153909931	153910131	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008131)	TTS (NM_008131)	10102.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	2.42	6.04	6.28	5.23	11.05	8.15	1.66	5.5	5.11	4.52	6.03	4.07
Merged-chr12-101082479-1	chr12	101082379	101082579	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	28.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	10.9	5.28	2.28	4.42	10.64	8.78	1.33	4.26	9.64	12.05	12.06	9.71
Merged-chr2-32150957-3	chr2	32150866	32151066	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159634)	promoter-TSS (NM_001159634)	-182.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	7.27	10.06	2.28	10.86	11.86	11.6	4.65	7.18	14.75	8.03	9.55	6.27
Merged-chr3-9217997-1	chr3	9217897	9218097	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32570.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	3.23	1.76	3.42	3.22	6.55	2.2	7.31	7.23	0.0	0.5	0.0	1.88
Merged-chr11-11746387-1	chr11	11746287	11746487	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	56210.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	1.62	1.01	1.71	3.22	2.45	6.59	7.64	5.78	0.59	3.51	1.51	0.0
Merged-chr9-118887311-1	chr9	118887211	118887411	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 12 of 13)	ORR1B2|LTR|ERVL-MaLR	-39225.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.42	5.28	7.42	1.61	4.91	10.35	8.3	4.49	5.51	18.08	12.06	4.39
Merged-chr8-19707282-1	chr8	19707182	19707382	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-22294.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	2.02	1.76	2.28	0.0	2.86	0.94	1.66	2.27	1.77	4.02	1.0	3.13
Merged-chr19-61021720-1	chr19	61021620	61021820	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	119120.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	5.65	4.02	1.14	5.23	5.73	2.82	2.99	8.02	0.39	0.0	0.0	0.0
Merged-chr6-33965831-1	chr6	33965731	33965931	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-63617.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	6.06	4.53	4.56	1.61	5.73	8.15	2.33	5.36	9.64	5.52	2.01	2.82
Merged-chr13-58126361-3	chr13	58126249	58126449	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029872, exon 1 of 1)	3' UTR (NM_029872, exon 1 of 1)	2207.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	4.85	6.04	12.55	2.82	6.95	5.33	2.99	9.59	9.64	13.56	10.55	5.95
Merged-chr17-29603438-1	chr17	29603338	29603538	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-7133.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	0.81	5.53	5.13	2.01	3.68	4.39	9.63	1.23	9.64	4.02	11.05	7.52
Merged-chr4-133217753-1	chr4	133217653	133217853	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3056.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	7.27	7.04	7.42	0.0	2.86	3.76	1.66	1.68	5.31	6.53	1.51	2.82
Merged-chr2-156705656-1	chr2	156705556	156705756	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146128, intron 4 of 12)	intron (NM_146128, intron 4 of 12)	15253.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	1.21	3.77	2.28	0.0	4.91	6.59	2.66	5.89	8.65	10.04	7.54	1.57
Merged-chr6-42583669-1	chr6	42583569	42583769	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13703.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	3.23	3.52	4.56	12.07	9.82	1.88	0.33	5.8	6.29	3.01	2.51	2.19
Merged-chr6-129922874-1	chr6	129922774	129922974	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-9650.0	NM_008463	16636.0	Mm.14111	NM_008463	ENSMUSG00000030173	Klra5	Ly49e	killer cell lectin-like receptor, subfamily A, member 5	protein-coding	2.02	0.75	5.7	1.61	6.95	11.29	7.64	3.08	1.18	1.0	0.0	1.25
Merged-chr2-32607429-2	chr2	32607327	32607527	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	442.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	4.85	6.29	3.42	5.23	10.64	9.41	6.98	4.71	11.6	24.6	16.58	6.58
Merged-chrX-169213947-1	chrX	169213847	169214047	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	-26738.0	NM_009666	11704.0	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	3.63	5.03	7.99	0.8	3.27	1.88	3.65	7.26	8.46	2.01	2.51	1.57
Merged-chr2-84758910-2	chr2	84758822	84759022	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16507.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	5.65	5.53	9.13	4.83	8.18	7.84	7.31	7.54	17.11	3.51	11.56	2.51
Merged-chr7-115616148-2	chr7	115616056	115616256	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025559, intron 7 of 15)	intron (NM_001025559, intron 7 of 15)	185453.0	NM_001277328	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	7.27	7.8	8.56	6.84	13.91	11.29	2.33	7.82	8.85	12.55	15.07	6.58
Merged-chr17-46712100-1	chr17	46712000	46712200	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145488, exon 1 of 17)	exon (NM_145488, exon 1 of 17)	637.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	2.83	4.53	3.42	3.22	1.23	7.53	3.32	0.73	7.28	7.03	2.51	5.95
Merged-chr19-18687726-1	chr19	18687626	18687826	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026120, intron 3 of 7)	RSINE1|SINE|B4	16946.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	6.46	5.79	3.42	13.67	3.68	5.02	4.32	6.9	4.72	4.02	6.03	3.76
Merged-chr10-18545944-2	chr10	18545846	18546046	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_019487, exon 1 of 4)	5' UTR (NM_019487, exon 1 of 4)	130.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	5.65	8.8	8.56	11.26	3.68	5.02	6.64	6.98	6.69	4.52	1.51	0.94
Merged-chr2-27381449-1	chr2	27381349	27381549	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	46159.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	7.27	3.27	0.0	1.61	4.09	5.96	4.98	6.56	3.54	9.04	3.52	2.51
Merged-chr12-85516046-1	chr12	85515946	85516146	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42156.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	10.5	6.29	5.7	4.83	4.91	15.05	4.65	6.48	18.29	4.02	3.52	4.39
Merged-chr18-55203470-1	chr18	55203370	55203570	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-210879.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.63	1.26	3.42	3.22	9.82	5.96	4.32	5.16	2.95	5.02	3.52	4.39
Merged-chr6-8510633-1	chr6	8510533	8510733	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	1033.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	2.02	8.8	4.56	2.01	5.73	5.02	15.94	6.84	4.72	3.51	8.04	5.33
Merged-chr19-8747562-1	chr19	8747462	8747662	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019829, intron 4 of 9)	B2_Mm2|SINE|B2	4591.0	NR_105958	102465599.0		NR_105958	ENSMUSG00000098844	Mir6992	Gm27906|mmu-mir-6992	microRNA 6992	ncRNA	10.09	6.04	3.42	7.24	3.27	5.33	3.32	2.89	8.06	9.04	8.04	4.7
Merged-chr7-90018250-1	chr7	90018150	90018350	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10909.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.08	2.77	13.69	2.82	4.09	15.05	2.66	0.93	4.92	7.53	5.02	3.13
Merged-chr3-63964020-1	chr3	63963920	63964120	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_015728, exon 1 of 6)	exon (NM_015728, exon 1 of 6)	713.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	5.25	4.78	6.28	6.44	7.77	5.64	6.31	9.06	5.51	10.54	15.58	10.65
Merged-chr8-74999671-1	chr8	74999571	74999771	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178017, exon 3 of 11)	exon (NM_178017, exon 3 of 11)	6021.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	4.85	4.02	3.42	3.22	4.09	3.14	5.98	6.56	0.2	2.51	0.0	0.31
Merged-chr1-161295677-2	chr1	161295569	161295769	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44459.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	8.88	9.81	1.14	11.66	3.27	13.17	6.31	4.93	3.34	5.02	2.51	1.88
Merged-chr11-76777830-1	chr11	76777730	76777930	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-14252.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	1.21	0.75	2.28	0.8	6.55	2.2	5.65	9.17	2.36	2.51	5.02	7.83
Merged-chr5-143058459-1	chr5	143058359	143058559	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54561.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	8.48	3.02	3.42	6.84	3.68	5.33	4.65	6.79	9.44	1.51	8.04	4.07
Merged-chr6-83708314-2	chr6	83708214	83708414	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075094, intron 1 of 2)	intron (NR_075094, intron 1 of 2)	2511.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	4.04	6.04	7.99	11.26	5.32	7.21	7.64	6.25	8.85	3.01	12.06	9.71
Merged-chr12-70831349-1	chr12	70831249	70831449	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	5835.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	8.08	4.53	6.85	10.05	4.5	4.7	7.97	7.82	3.93	3.01	10.05	5.64
Merged-chr9-41461936-2	chr9	41461854	41462054	+	673.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-12939.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	9.29	5.28	10.27	6.03	10.23	7.53	4.32	7.12	10.03	8.54	13.06	2.51
Merged-chr11-89022552-2	chr11	89022451	89022651	+	673.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23148.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.83	8.3	5.7	3.22	9.82	5.96	7.97	19.15	9.24	8.54	13.57	6.89
Merged-chr6-142814807-2	chr6	142814695	142814895	+	673.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045707, intron 2 of 6)	intron (NR_045707, intron 2 of 6)	564.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	4.44	3.52	6.85	14.88	6.95	6.27	2.66	9.93	11.6	11.05	15.07	3.76
Merged-chr18-50130627-2	chr18	50130528	50130728	+	673.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2427.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.85	1.51	5.7	1.21	13.5	0.0	4.32	6.98	11.8	11.55	7.03	7.21
Merged-chr9-89204404-3	chr9	89204296	89204496	+	673.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	5123.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	13.33	8.05	2.28	4.02	10.23	13.48	6.98	4.96	8.46	15.06	15.58	6.58
Merged-chr1-91054264-3	chr1	91054171	91054371	+	673.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	827.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	8.48	8.55	5.13	2.01	5.32	7.84	2.66	4.93	14.16	5.02	6.53	6.89
Merged-chr6-114782194-3	chr6	114782090	114782290	+	673.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	139093.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	5.25	4.53	10.84	7.24	9.0	21.01	6.98	9.34	8.26	7.03	6.03	9.4
Merged-chr17-84340705-3	chr17	84340621	84340821	+	673.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	125487.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	10.5	2.77	17.11	6.84	11.86	5.33	8.64	6.79	7.47	5.02	10.05	7.83
Merged-chr2-86020628-2	chr2	86020507	86020707	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146578)	promoter-TSS (NM_146578)	-33.0	NM_146578	258571.0	Mm.223099	NM_146578	ENSMUSG00000045392	Olfr1033	MOR199-2	olfactory receptor 1033	protein-coding	0.81	1.76	5.13	3.62	5.32	6.9	2.99	7.21	8.46	7.53	16.08	10.02
Merged-chr10-21826071-2	chr10	21825978	21826178	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56106.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.21	2.77	9.13	5.63	5.32	9.41	6.64	6.34	10.62	10.54	5.02	10.65
Merged-chr11-31949570-2	chr11	31949497	31949697	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16036.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	6.46	1.76	3.42	4.02	3.68	1.25	3.65	4.49	14.55	9.04	6.03	6.89
Merged-chr2-167962517-2	chr2	167962420	167962620	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.44	3.27	4.56	4.42	3.27	6.9	9.97	7.54	7.87	9.04	9.04	5.33
Merged-chr7-123084954-2	chr7	123084855	123085055	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38930.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	1.62	4.53	11.41	6.44	8.59	9.41	1.66	6.5	10.82	10.04	18.09	10.02
Merged-chr19-46599678-2	chr19	46599557	46599757	+	673.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	551.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.04	5.28	7.99	4.02	4.09	4.7	8.64	7.51	4.52	12.55	9.04	4.7
Merged-chr15-101988336-2	chr15	101988277	101988477	+	673.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	15965.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	5.65	6.29	1.71	4.42	8.18	4.08	1.0	0.93	9.44	6.53	6.53	7.83
Merged-chr1-88260501-4	chr1	88260408	88260608	+	673.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	8900.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	3.63	2.26	11.41	3.22	8.18	7.84	7.64	7.51	2.36	4.52	4.52	5.01
Merged-chr1-172619439-3	chr1	172619335	172619535	+	673.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13539.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	8.08	7.8	15.97	5.63	11.05	10.98	3.99	4.93	22.42	8.54	13.06	7.52
Merged-chr9-21859738-1	chr9	21859638	21859838	+	673.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7103.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	11.31	5.79	2.85	2.82	6.95	7.53	4.32	6.93	5.11	8.54	14.07	3.76
Merged-chr11-79673894-2	chr11	79673795	79673995	+	673.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045898, intron 2 of 2)	intron (NR_045898, intron 2 of 2)	1191.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	5.65	6.29	18.25	6.44	6.55	11.92	6.98	3.73	15.54	10.04	19.09	5.64
Merged-chr4-149791732-2	chr4	149791646	149791846	+	673.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17479.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.27	8.05	5.7	2.41	6.14	5.02	6.31	3.64	10.62	18.08	8.54	11.9
Merged-chr2-153118372-2	chr2	153118261	153118461	+	673.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	9893.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	3.63	4.53	5.7	2.41	10.64	12.86	6.64	8.92	14.95	10.54	12.06	7.52
Merged-chr6-4797008-2	chr6	4796926	4797126	+	673.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49720.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	9.29	7.55	6.85	11.66	5.32	5.33	4.98	9.0	5.31	6.53	2.01	3.13
Merged-chr4-83567891-3	chr4	83567771	83567971	+	673.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355549, intron 6 of 24)	intron (NM_001355549, intron 6 of 24)	42326.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	9.69	6.79	10.84	6.84	10.64	13.48	13.62	7.51	7.67	11.05	8.04	7.21
Merged-chr2-6130208-1	chr2	6130108	6130308	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159657)	promoter-TSS (NM_001159657)	-23.0	NM_001159657	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	7.27	4.78	1.14	4.02	10.64	6.27	8.3	9.03	5.9	6.03	7.03	5.95
Merged-chr1-39782084-2	chr1	39781986	39782186	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	23246.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	8.88	3.77	5.13	3.22	13.5	6.9	11.29	3.36	13.77	10.04	4.52	0.94
Merged-chr8-80992129-2	chr8	80992041	80992241	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027554, intron 6 of 9)	intron (NM_027554, intron 6 of 9)	22765.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	13.33	10.06	6.85	7.24	6.14	3.14	2.66	2.52	10.82	9.04	6.53	6.58
Merged-chr15-55307992-1	chr15	55307892	55308092	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	242.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.44	1.01	6.28	2.41	4.09	2.51	5.65	1.6	5.51	3.51	6.03	3.13
Merged-chr18-33790240-2	chr18	33790128	33790328	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4664.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	4.04	5.79	6.28	12.87	4.09	7.53	6.64	6.95	11.21	7.03	14.57	8.77
Merged-chr12-84190235-2	chr12	84190130	84190330	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.06	8.55	9.7	1.61	7.77	2.82	1.99	3.06	12.0	6.53	5.02	8.46
Merged-chr2-38509168-2	chr2	38509103	38509303	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2494.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.27	6.79	3.42	4.42	5.73	3.14	2.99	5.07	4.52	2.51	0.5	4.39
Merged-chr6-34865530-1	chr6	34865430	34865630	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2384.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.86	3.52	3.42	2.82	2.45	6.9	5.98	4.63	7.47	7.03	6.53	2.19
Merged-chr4-123343392-1	chr4	123343292	123343492	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-140.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	4.85	4.28	1.71	1.21	3.68	7.53	4.65	4.18	5.31	6.03	4.02	2.82
Merged-chr18-36483382-2	chr18	36483293	36483493	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-28898.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	8.88	3.27	13.12	5.23	3.27	6.27	2.99	12.31	4.92	3.51	0.5	1.25
Merged-chr11-119040243-1	chr11	119040143	119040343	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013926, intron 2 of 4)	intron (NM_013926, intron 2 of 4)	670.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	7.67	3.52	3.42	7.64	13.5	10.98	5.31	6.22	10.03	5.52	10.05	3.76
Merged-chr3-90295783-2	chr3	90295691	90295891	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25642.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	5.25	5.79	1.71	9.25	6.14	4.39	12.29	8.36	8.65	6.03	6.03	7.21
Merged-chr19-21781733-2	chr19	21781624	21781824	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	3384.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.44	5.28	5.13	10.46	3.68	4.39	5.31	6.5	8.06	3.51	10.05	6.27
Merged-chr16-84814719-2	chr16	84814622	84814822	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023844, intron 5 of 9)	intron (NM_023844, intron 5 of 9)	20254.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	5.25	6.29	3.42	6.84	5.73	9.72	6.31	6.45	7.87	7.53	17.59	9.71
Merged-chr3-108346024-2	chr3	108345899	108346099	+	673.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 13 of 19)	intron (NM_019972, intron 13 of 19)	-18912.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	8.88	3.77	9.13	5.63	7.77	8.15	8.64	15.22	9.05	8.03	8.04	1.88
Merged-chr13-34279176-2	chr13	34279089	34279289	+	673.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	65993.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.63	2.26	1.14	8.45	8.59	6.27	3.99	8.8	10.82	8.03	10.05	4.7
Merged-chr7-3719329-2	chr7	3719205	3719405	+	673.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011095, exon 4 of 15)	exon (NM_011095, exon 4 of 15)	1077.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	10.9	5.79	18.83	10.05	8.18	5.64	4.65	6.62	8.65	5.02	7.54	0.94
Merged-chr8-36953144-3	chr8	36953137	36953337	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	-795.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.21	2.77	4.56	2.82	2.45	2.51	3.32	6.03	3.54	4.52	6.03	2.51
Merged-chrX-134551133-1	chrX	134551033	134551233	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 13 of 18)	intron (NM_013482, intron 13 of 18)	-9463.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	4.85	1.01	2.85	3.62	7.77	6.9	8.3	5.41	1.97	4.52	6.53	5.33
Merged-chr17-35937906-3	chr17	35937808	35938008	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9246.0	NR_028278	667766.0	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	11.71	7.29	2.85	2.01	4.91	15.37	6.98	2.13	9.05	11.05	7.54	7.21
Merged-chr7-98601931-3	chr7	98601827	98602027	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172280, intron 15 of 19)	intron (NM_172280, intron 15 of 19)	54642.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	1.21	4.02	8.56	10.46	8.59	11.6	2.99	9.53	13.18	7.03	8.54	2.19
Merged-chr3-132755989-1	chr3	132755889	132756089	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	71845.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	1.26	2.85	5.63	4.91	4.39	7.64	6.28	5.31	5.02	10.55	2.19
Merged-chr9-62121957-3	chr9	62121869	62122069	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039595)	TTS (NR_039595)	625.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	6.46	3.27	2.28	2.82	5.32	4.7	2.66	3.48	7.87	6.03	11.05	5.95
Merged-chr11-54888238-1	chr11	54888138	54888338	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-14616.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.81	1.01	3.99	4.02	6.55	11.29	9.97	1.82	0.39	3.01	2.51	1.88
Merged-chr17-12768997-3	chr17	12768953	12769153	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	653.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	2.83	1.51	1.14	1.61	2.86	9.41	4.32	4.57	6.1	7.03	7.03	6.89
Merged-chr6-108742263-3	chr6	108742151	108742351	+	673.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40808.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	9.29	6.29	13.12	8.04	10.23	7.84	11.63	13.18	5.11	14.06	4.02	9.71
Merged-chr17-24209016-3	chr17	24208931	24209131	+	673.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010947, exon 1 of 6)	5' UTR (NM_010947, exon 1 of 6)	356.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	6.86	3.52	1.71	6.03	4.09	4.7	2.99	6.25	9.24	10.54	6.53	8.77
Merged-chr10-67004962-2	chr10	67004863	67005063	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-112.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	3.63	5.03	1.71	6.03	11.86	14.74	4.32	8.19	10.03	14.56	9.55	5.64
Merged-chr13-47044480-2	chr13	47044376	47044576	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172262, intron 1 of 20)	intron (NM_172262, intron 1 of 20)	977.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	2.83	5.03	4.56	3.62	3.68	10.35	2.99	2.55	7.87	10.54	10.55	10.34
Merged-chr6-70805486-2	chr6	70805393	70805593	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13318.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	10.09	2.77	12.55	1.21	4.91	7.53	2.99	5.58	9.64	11.55	10.05	6.58
Merged-chr1-155425958-2	chr1	155425878	155426078	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8534.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	1.21	1.26	3.42	2.41	9.0	3.76	0.66	8.27	10.03	8.54	9.55	3.45
Merged-chr9-57723394-2	chr9	57723298	57723498	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153799, intron 3 of 6)	intron (NM_153799, intron 3 of 6)	14829.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	6.46	5.03	3.99	2.41	14.73	6.27	4.32	7.43	10.82	9.04	6.53	11.59
Merged-chr14-25614109-3	chr14	25613986	25614186	+	673.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	10573.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	8.88	8.05	13.12	13.27	11.05	14.11	4.32	10.51	4.72	6.53	2.51	2.82
Merged-chr15-94688288-2	chr15	94688201	94688401	+	673.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59116.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	2.02	3.02	0.0	1.61	5.32	7.21	3.32	9.73	11.8	9.54	7.54	12.84
Merged-chr8-107572753-2	chr8	107572630	107572830	+	673.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	15752.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	7.67	10.06	1.71	4.02	5.32	4.7	3.65	5.47	7.08	6.03	17.08	6.27
Merged-chr7-121641410-2	chr7	121641314	121641514	+	673.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033173)	TTS (NM_001033173)	51511.0	NR_131051	69407.0		NR_131051	ENSMUSG00000108409	1700025J12Rik	-	RIKEN cDNA 1700025J12 gene	ncRNA	3.23	3.52	15.97	4.02	6.14	5.96	2.99	8.97	12.59	9.54	19.09	11.9
Merged-chr14-45085375-3	chr14	45085277	45085477	+	673.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97266.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	13.33	3.77	10.27	5.23	7.77	10.98	10.96	11.86	5.11	10.54	11.05	4.39
Merged-chr10-69307237-3	chr10	69307126	69307326	+	673.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45686.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	7.67	9.31	2.28	4.83	4.09	7.21	7.64	4.01	15.74	8.54	6.53	3.45
Merged-chr6-38506701-3	chr6	38506593	38506793	+	673.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-632.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	4.04	3.27	12.55	10.46	6.95	4.7	5.98	8.38	11.41	6.03	11.05	9.4
Merged-chr8-120745005-1	chr8	120744905	120745105	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6366.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	1.62	4.02	2.28	2.41	6.95	1.88	3.65	7.26	7.87	1.51	5.53	8.46
Merged-chrX-96316700-2	chrX	96316587	96316787	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172931, intron 8 of 10)	L1_Mus2|LINE|L1	-23249.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	1.62	4.28	9.7	7.64	6.55	3.76	14.95	7.04	1.57	5.52	10.55	6.58
Merged-chr5-20792353-1	chr5	20792253	20792453	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 8 of 17)	RLTR17|LTR|ERVK	89771.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.81	1.51	2.28	3.22	4.09	6.59	2.66	5.58	4.52	2.51	2.51	0.63
Merged-chr10-80659314-1	chr10	80659214	80659414	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2243.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	9.69	13.83	0.0	0.8	2.05	10.35	0.0	1.49	4.52	8.03	7.54	3.76
Merged-chr12-103493011-3	chr12	103492917	103493117	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35794.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	7.27	8.55	2.85	6.44	11.05	8.78	1.33	5.86	13.57	14.06	10.55	11.59
Merged-chr19-7382576-2	chr19	7382461	7382661	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045703)	promoter-TSS (NR_045703)	-442.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	6.06	9.06	3.42	4.02	3.27	4.7	4.98	5.36	9.64	8.54	11.56	6.27
Merged-chr2-73386011-1	chr2	73385911	73386111	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276444, intron 1 of 15)	intron (NM_001276444, intron 1 of 15)	469.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	6.06	8.55	7.99	3.62	8.18	11.6	6.98	3.17	4.92	8.54	7.03	8.46
Merged-chr17-44831397-1	chr17	44831297	44831497	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178652, intron 2 of 11)	RMER17C|LTR|ERVK	-16600.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.4	0.25	3.42	0.4	10.64	8.78	6.98	5.41	3.54	1.0	8.04	6.58
Merged-chr13-92940806-2	chr13	92940702	92940902	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96015.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	9.29	6.04	3.99	9.65	1.64	1.25	1.66	1.29	20.85	6.03	11.56	7.52
Merged-chr4-75262544-1	chr4	75262444	75262644	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15748.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	2.02	7.04	3.99	6.44	4.91	7.53	7.64	4.35	3.15	3.51	1.0	5.01
Merged-chr10-94992340-3	chr10	94992231	94992431	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47753.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	7.67	6.54	4.56	1.21	10.64	4.08	1.66	7.74	9.24	12.55	12.56	4.7
Merged-chr3-103026399-1	chr3	103026299	103026499	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310693, intron 1 of 17)	B2_Mm2|SINE|B2	5853.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	7.67	5.03	5.13	0.4	4.91	9.41	1.99	0.87	9.24	11.55	4.02	4.07
Merged-chr19-45229606-1	chr19	45229506	45229706	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5630.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	6.06	7.55	7.99	6.03	5.32	2.51	6.31	1.85	3.74	2.01	2.01	1.25
Merged-chr1-154058057-2	chr1	154057962	154058162	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143125.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	15.34	6.04	7.42	2.01	9.41	7.21	1.99	4.18	13.37	16.07	5.53	5.95
Merged-chr8-86827390-1	chr8	86827290	86827490	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	57868.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	3.52	1.14	0.0	6.55	4.39	2.99	6.36	0.79	0.0	0.0	2.51
Merged-chr17-31079397-1	chr17	31079297	31079497	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	21703.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.04	6.54	5.13	0.8	1.23	5.02	2.66	1.12	5.11	12.55	7.54	3.45
Merged-chr9-44194110-1	chr9	44194010	44194210	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	39936.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.86	4.28	2.28	8.85	5.32	4.39	6.64	8.97	1.38	0.0	1.0	1.57
Merged-chr18-39544388-1	chr18	39544288	39544488	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57143.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.62	7.04	1.14	1.61	8.18	20.38	4.32	4.91	9.64	9.54	7.54	0.94
Merged-chr10-67743086-1	chr10	67742986	67743186	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	169576.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	4.04	1.51	4.56	4.83	6.55	5.96	3.65	6.14	4.92	8.03	2.01	5.95
Merged-chrX-96094772-2	chrX	96094675	96094875	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1270.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	9.29	7.04	16.54	0.8	4.91	11.6	6.64	2.92	11.8	8.54	1.0	4.39
Merged-chr16-38118952-1	chr16	38118852	38119052	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	B3A|SINE|B2	-29692.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	2.42	2.52	6.85	4.42	3.27	6.27	6.64	9.76	9.64	6.03	3.01	3.45
Merged-chr15-100638487-1	chr15	100638387	100638587	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1547.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	3.23	4.28	3.42	2.82	5.32	1.88	3.99	5.64	8.06	4.02	7.03	3.13
Merged-chr6-37143212-1	chr6	37143112	37143312	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156764.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	4.04	6.29	2.28	6.03	7.77	5.02	2.66	9.28	8.46	9.54	7.54	9.71
Merged-chr4-139289071-1	chr4	139288971	139289171	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	21637.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	4.04	4.53	2.85	4.02	6.95	7.53	11.29	3.2	2.36	4.02	3.01	9.4
Merged-chr18-3495660-1	chr18	3495560	3495760	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12297.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	8.88	9.06	2.85	4.83	4.5	2.51	0.66	4.37	5.9	6.53	11.05	3.45
Merged-chr16-39053165-1	chr16	39053065	39053265	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135785.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.21	0.75	2.28	1.61	2.45	6.9	2.99	5.24	2.16	1.0	2.01	2.51
Merged-chr6-120364714-1	chr6	120364614	120364814	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-345.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	3.63	3.27	3.99	5.63	3.27	5.64	4.98	5.5	8.85	11.55	9.04	4.7
Merged-chr16-12589102-2	chr16	12588995	12589195	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-222295.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.23	4.78	4.56	12.47	8.18	5.33	2.33	18.84	5.31	7.03	18.59	10.96
Merged-chr2-79243476-1	chr2	79243376	79243576	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-11950.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	4.85	2.26	0.0	4.02	2.86	3.76	4.65	7.29	5.11	2.51	6.53	2.19
Merged-chr7-139944112-2	chr7	139943968	139944168	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009482, exon 1 of 2)	exon (NM_009482, exon 1 of 2)	212.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	1.62	6.04	3.42	3.22	5.73	4.39	5.98	6.45	6.88	7.53	3.01	8.14
Merged-chr4-63389452-2	chr4	63389348	63389548	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8792.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.63	7.55	10.84	1.21	6.14	6.59	10.63	5.3	10.82	3.51	9.55	4.39
Merged-chr4-95711514-2	chr4	95711420	95711620	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	132099.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	1.21	3.27	15.97	7.24	7.77	1.25	4.98	12.48	6.69	5.02	7.03	6.27
Merged-chr7-92551112-1	chr7	92551012	92551212	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10037.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	8.08	2.01	4.56	0.0	3.27	10.03	2.33	4.99	3.54	5.52	10.05	5.01
Merged-chr11-8609379-1	chr11	8609279	8609479	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	55156.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.04	1.51	10.27	2.01	3.68	3.76	3.65	3.67	1.77	5.52	3.52	2.82
Merged-chr9-110985790-1	chr9	110985690	110985890	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153100, exon 3 of 3)	3' UTR (NM_153100, exon 3 of 3)	-3709.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	5.25	3.77	6.85	3.62	7.77	4.7	10.63	7.04	9.05	4.52	1.0	0.94
Merged-chr3-98157757-1	chr3	98157657	98157857	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2877.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	2.42	3.27	2.28	0.8	2.45	7.53	3.65	5.1	3.34	2.01	6.03	1.88
Merged-chr8-104632128-3	chr8	104632050	104632250	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-829.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	9.69	4.02	6.28	9.25	2.05	6.59	15.94	7.96	7.28	6.03	14.07	7.21
Merged-chrX-153635475-1	chrX	153635375	153635575	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60805.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	0.4	3.27	1.14	1.61	6.55	2.2	2.33	5.21	0.39	2.01	0.5	0.63
Merged-chrX-12795034-1	chrX	12794934	12795134	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045852, intron 2 of 4)	MLT1E2|LTR|ERVL-MaLR	32756.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	2.02	2.26	4.56	1.61	6.95	2.51	2.33	7.37	9.83	3.01	3.01	5.33
Merged-chr7-112213113-1	chr7	112213013	112213213	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-12723.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	6.06	2.77	2.28	3.22	5.73	7.53	1.66	6.36	0.79	4.02	0.0	0.94
Merged-chr2-174477372-1	chr2	174477272	174477472	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-4431.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	4.04	1.76	3.42	2.82	1.64	5.64	1.99	5.44	6.69	5.52	6.53	5.95
Merged-chr18-79323822-1	chr18	79323722	79323922	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-214431.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	2.42	5.53	3.42	2.41	5.73	3.14	3.65	4.91	3.34	1.51	3.01	3.76
Merged-chr3-51797032-3	chr3	51796941	51797141	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135862.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	6.06	9.06	10.27	6.84	12.68	7.53	4.98	8.94	7.28	7.53	14.57	10.34
Merged-chr19-53870086-1	chr19	53869986	53870186	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22145.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.63	2.77	1.14	2.41	4.09	5.64	2.66	1.15	3.34	1.0	5.02	1.57
Merged-chrX-93586267-1	chrX	93586167	93586367	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008892, intron 16 of 36)	intron (NM_008892, intron 16 of 36)	45888.0	NM_008892	18968.0	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	2.83	1.51	5.7	8.04	6.55	1.88	6.64	7.99	3.93	2.51	12.06	4.07
Merged-chr13-90360154-1	chr13	90360054	90360254	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270487.0	NM_025335	66074.0	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	0.81	0.0	0.57	0.0	1.64	0.0	0.0	1.07	7.87	4.52	6.03	7.83
Merged-chr18-39319429-1	chr18	39319329	39319529	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167816.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.85	2.77	0.0	2.01	4.91	2.82	0.0	1.91	8.46	15.06	5.02	7.21
Merged-chr18-69365385-3	chr18	69365374	69365574	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	19314.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.83	8.3	3.99	6.44	7.77	3.14	4.32	8.5	3.54	6.53	10.55	3.76
Merged-chr12-31501434-1	chr12	31501334	31501534	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1818.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	4.85	1.01	1.14	3.22	3.27	5.02	0.66	5.44	3.54	2.01	4.02	2.19
Merged-chr10-75486671-1	chr10	75486571	75486771	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30710.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.65	8.55	5.13	1.61	6.14	6.59	4.32	5.38	5.11	5.52	2.01	1.57
Merged-chr1-138517564-1	chr1	138517464	138517664	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 5 of 9)	intron (NM_021605, intron 5 of 9)	102193.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.25	5.79	7.42	4.83	6.55	2.51	2.33	6.5	2.95	5.52	5.53	2.19
Merged-chr15-57977041-1	chr15	57976941	57977141	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8862.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	3.63	3.77	2.85	4.02	8.18	9.09	1.66	5.58	8.06	10.54	8.04	4.7
Merged-chr1-191575055-1	chr1	191574955	191575155	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	489.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	2.02	2.52	13.12	5.23	9.82	3.76	8.64	8.66	12.39	9.54	11.05	3.45
Merged-chr8-81341737-2	chr8	81341641	81341841	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-821.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	11.31	9.31	12.55	2.41	11.05	11.29	9.3	4.68	4.92	2.51	7.03	2.82
Merged-chr10-96632940-1	chr10	96632840	96633040	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	15939.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.25	5.79	4.56	3.62	6.95	10.66	3.99	4.43	8.46	9.54	3.01	2.51
Merged-chr5-67972762-1	chr5	67972662	67972862	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-29681.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	2.42	1.01	0.0	5.63	2.86	5.02	9.3	7.01	3.54	4.02	6.03	1.57
Merged-chr16-24629913-1	chr16	24629813	24630013	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-91942.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	13.73	15.85	9.7	10.05	18.0	23.2	12.62	14.3	16.13	13.05	12.56	8.14
Merged-chr19-55806470-1	chr19	55806370	55806570	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	64660.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.04	3.52	7.42	0.8	4.91	1.57	1.66	7.26	1.38	3.51	4.02	4.39
Merged-chr9-37236848-1	chr9	37236748	37236948	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	18890.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	1.62	2.26	3.99	6.84	3.68	1.88	4.98	5.16	2.95	1.0	2.01	1.57
Merged-chr18-65524251-1	chr18	65524151	65524351	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55979.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.06	4.53	0.0	2.41	11.86	5.96	3.32	5.69	6.49	5.52	5.53	8.46
Merged-chr4-126104473-1	chr4	126104373	126104573	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	516.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	5.65	4.02	0.57	2.41	2.45	8.47	5.31	4.07	4.52	3.51	3.01	7.21
Merged-chr8-115070458-2	chr8	115070362	115070562	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	630810.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	2.83	7.04	15.4	9.65	4.09	5.64	4.65	12.62	5.7	6.53	5.53	6.89
Merged-chr2-51933700-1	chr2	51933600	51933800	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355607)	promoter-TSS (NM_001355607)	-365.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	1.62	2.52	3.42	5.63	4.91	3.14	7.31	3.25	2.16	2.01	2.51	0.63
Merged-chr14-103421458-3	chr14	103421354	103421554	+	672.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74654.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	7.67	8.55	9.7	9.25	3.27	7.21	6.31	8.5	6.49	5.02	7.54	5.95
Merged-chr1-192088116-3	chr1	192087969	192088169	+	672.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	4530.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	4.85	9.56	7.99	6.84	6.14	6.59	1.99	5.58	3.93	5.52	9.55	8.46
Merged-chr11-110473627-3	chr11	110473522	110473722	+	672.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-4893.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.23	6.29	6.85	0.0	6.14	16.31	1.99	4.51	21.44	14.56	13.06	12.22
Merged-chr10-78464015-2	chr10	78463910	78464110	+	672.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	938.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	5.65	9.81	6.85	3.22	14.32	5.02	6.64	7.99	4.33	4.52	8.54	7.52
Merged-chr4-46643526-2	chr4	46643410	46643610	+	672.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198664, intron 2 of 12)	intron (NM_198664, intron 2 of 12)	6689.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	3.63	3.02	4.56	2.01	2.05	11.29	6.64	8.21	7.67	6.03	5.53	6.27
Merged-chr1-121136969-2	chr1	121136880	121137080	+	672.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49575.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	1.21	3.02	2.85	2.82	1.64	1.25	3.32	7.29	16.52	8.54	12.56	8.46
Merged-chr3-19301419-3	chr3	19301311	19301511	+	672.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	B3|SINE|B2	9911.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	2.02	2.52	6.28	6.03	4.91	4.7	3.99	10.93	7.47	1.0	5.02	4.39
Merged-chr9-64806424-3	chr9	64806311	64806511	+	672.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4600.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	8.88	7.04	10.27	4.02	8.59	10.35	8.64	4.49	8.26	9.04	7.03	10.34
Merged-chr2-180117316-2	chr2	180117214	180117414	+	672.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2052.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	6.86	9.56	10.84	4.02	9.82	10.98	2.66	4.26	4.33	3.51	1.51	3.45
Merged-chr9-3037998-2	chr9	3037897	3038097	+	672.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_039546)	TTS (NR_039546)	746.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	13.73	14.34	10.84	9.25	21.27	7.53	16.28	26.78	2.95	2.01	2.01	3.45
Merged-chr6-108536668-3	chr6	108536581	108536781	+	672.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	46938.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.23	6.54	5.7	9.25	12.27	10.98	17.61	15.95	10.23	6.53	4.52	4.07
Merged-chr14-118925452-1	chr14	118925352	118925552	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025943)	promoter-TSS (NM_025943)	18.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	4.44	4.78	5.13	0.4	3.68	10.66	6.98	7.04	2.95	4.52	7.03	5.33
Merged-chr16-11323596-3	chr16	11323424	11323624	+	672.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	620.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	2.83	4.78	2.28	10.86	4.09	5.64	2.66	8.27	5.31	7.03	10.05	6.27
Merged-chr7-110816276-1	chr7	110816176	110816376	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025999)	TTS (NM_025999)	28105.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	6.46	2.77	8.56	4.83	6.14	5.64	7.97	5.13	8.65	12.55	7.03	6.58
Merged-chr17-15724098-1	chr17	15723998	15724198	+	672.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 2 of 35)	intron (NM_007690, intron 2 of 35)	19131.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.44	3.02	2.28	2.01	1.23	5.64	0.33	4.01	10.42	12.05	4.52	8.77
Merged-chr11-4219663-1	chr11	4219563	4219763	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028022, intron 2 of 8)	intron (NM_028022, intron 2 of 8)	1412.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	2.83	4.02	7.42	2.82	9.41	8.47	2.66	6.5	7.67	6.03	7.03	7.21
Merged-chr3-38235554-1	chr3	38235454	38235654	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27435.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	1.14	0.0	7.36	5.96	6.64	7.23	2.16	2.01	8.04	0.0
Merged-chr8-124750292-2	chr8	124750191	124750391	+	672.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	1518.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	13.73	8.05	13.69	4.42	4.5	14.42	7.64	5.8	1.18	1.0	0.0	0.31
Merged-chr6-72155332-2	chr6	72155221	72155421	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011375)	TTS (NM_011375)	-32124.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.04	5.79	2.85	4.83	5.73	12.54	5.31	6.0	7.47	5.02	13.06	9.4
Merged-chr4-3728851-2	chr4	3728776	3728976	+	672.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	13912.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	3.23	7.04	6.28	2.41	2.86	5.96	6.31	4.07	9.83	6.03	14.07	8.46
Merged-chr6-88044485-2	chr6	88044363	88044563	+	672.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	MIR|SINE|MIR	554.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	2.42	7.55	8.56	12.07	9.0	5.96	9.3	6.73	10.82	5.52	9.04	4.7
Merged-chr17-26946747-2	chr17	26946696	26946896	+	672.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281491, intron 3 of 18)	CpG	1323.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	4.44	6.04	6.28	3.62	1.64	7.21	0.66	7.09	6.29	12.55	9.04	7.52
Merged-chr4-152136723-2	chr4	152136615	152136815	+	672.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	-390.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	6.46	7.04	0.57	5.23	8.59	10.03	1.99	4.63	10.42	10.04	15.58	6.89
Merged-chr4-119083007-3	chr4	119082905	119083105	+	672.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13894.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	8.08	9.81	7.99	11.26	5.32	5.96	4.32	9.62	10.42	17.07	27.13	8.46
Merged-chr2-153348588-2	chr2	153348495	153348695	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2456.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	4.85	6.54	1.71	3.62	10.64	10.66	2.99	3.62	9.83	12.55	2.51	3.76
Merged-chr6-98234259-1	chr6	98234159	98234359	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	108495.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	8.48	8.05	14.83	16.49	5.32	3.76	3.32	9.76	7.47	4.02	8.04	9.08
Merged-chr8-46861335-2	chr8	46861231	46861431	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	121586.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	9.69	11.32	2.28	2.41	2.05	9.72	9.3	3.45	4.13	3.01	8.04	4.7
Merged-chr11-86591612-2	chr11	86591502	86591702	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-7444.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	6.06	0.75	15.97	4.83	4.09	5.64	1.99	6.76	11.21	4.52	11.56	4.7
Merged-chr1-97705517-1	chr1	97705417	97705617	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_173760)	TTS (NM_173760)	-43499.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.81	0.0	0.0	2.41	6.95	3.45	5.98	7.07	0.98	4.02	3.01	2.82
Merged-chr5-140835733-1	chr5	140835633	140835833	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5302.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	1.62	7.04	5.7	3.22	7.36	6.59	0.0	5.24	1.97	0.5	3.52	3.45
Merged-chr13-77049646-1	chr13	77049546	77049746	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134071, intron 17 of 20)	intron (NM_134071, intron 17 of 20)	85822.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	2.42	3.02	7.99	1.61	6.95	1.25	3.65	6.67	2.56	1.51	2.51	3.45
Merged-chr7-80177620-1	chr7	80177520	80177720	+	672.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-9221.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.81	3.02	2.85	7.24	1.64	11.29	1.0	0.9	19.28	10.04	10.05	7.83
Merged-chr2-180709466-1	chr2	180709366	180709566	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289651)	promoter-TSS (NM_001289651)	533.0	NM_177852	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.04	5.28	2.28	1.21	6.55	7.21	5.31	4.79	6.1	6.03	4.52	3.45
Merged-chr4-3795286-1	chr4	3795186	3795386	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	40369.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.83	3.52	1.14	1.61	5.32	0.31	12.29	3.7	3.15	9.54	2.51	5.95
Merged-chr19-42461209-2	chr19	42461105	42461305	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29417.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	4.44	6.54	3.42	7.64	7.36	5.64	5.65	16.21	2.16	0.5	1.51	2.19
Merged-chr7-141476815-2	chr7	141476741	141476941	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	461.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.46	3.27	6.28	8.45	9.41	5.33	8.97	5.83	9.64	8.03	10.05	8.46
Merged-chr14-87486087-1	chr14	87485987	87486187	+	672.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253755, intron 8 of 11)	intron (NM_001253755, intron 8 of 11)	69504.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	2.42	0.75	4.56	4.02	0.82	3.76	2.66	5.83	10.23	9.04	12.56	7.83
Merged-chr4-47438155-2	chr4	47438039	47438239	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36228.0	NM_001355496	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	3.63	2.77	2.85	3.22	1.64	9.72	5.31	3.84	14.95	3.51	9.55	7.83
Merged-chr5-113120178-1	chr5	113120078	113120278	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	18407.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	1.21	7.29	17.11	9.25	1.64	2.2	0.33	1.4	0.59	0.5	2.01	0.31
Merged-chr5-77217450-2	chr5	77217329	77217529	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5958.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	8.08	6.04	6.28	7.24	3.27	5.02	2.33	8.27	16.33	10.54	10.05	10.96
Merged-chr8-120725440-1	chr8	120725340	120725540	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10918.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.63	3.02	3.42	1.61	3.68	6.27	3.99	9.81	4.33	6.03	8.54	5.33
Merged-chr2-181890172-1	chr2	181890072	181890272	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	25812.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	2.83	3.77	5.7	9.65	6.14	6.59	4.32	9.98	1.18	0.0	4.02	2.19
Merged-chr10-20149303-3	chr10	20149155	20149355	+	672.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198635, intron 1 of 17)	CpG	335.0	NM_001198635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.25	6.29	5.7	5.23	5.73	5.33	3.99	2.1	9.64	8.03	2.51	10.96
Merged-chr2-153156240-4	chr2	153156060	153156260	+	672.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-5141.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	8.88	9.06	8.56	3.62	4.91	5.02	4.98	4.15	8.06	4.52	8.04	3.45
Merged-chr11-115100644-3	chr11	115100478	115100678	+	672.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9147.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	5.25	9.56	5.7	4.42	4.91	5.64	8.3	3.64	2.95	9.54	4.02	1.57
Merged-chr9-105393636-2	chr9	105393540	105393740	+	672.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172461, intron 1 of 15)	intron (NM_172461, intron 1 of 15)	1647.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	8.08	8.8	0.57	5.63	7.36	8.78	7.64	7.04	1.97	0.5	2.01	1.57
Merged-chr4-3786919-2	chr4	3786796	3786996	+	672.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	48759.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.08	9.06	2.28	7.64	6.14	6.27	4.65	7.15	6.69	5.52	11.05	8.14
Merged-chr9-116086577-2	chr9	116086456	116086656	+	672.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88807.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.06	6.29	2.28	5.63	7.36	5.96	3.32	8.21	3.93	2.01	3.52	7.83
Merged-chr1-134494120-2	chr1	134493996	134494196	+	672.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-564.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	2.02	3.27	5.7	2.82	4.09	8.78	1.66	6.9	6.88	5.02	11.05	5.95
Merged-chr2-155071311-2	chr2	155071191	155071391	+	672.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016661, intron 1 of 9)	L2|LINE|L2	3206.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	14.54	3.52	7.99	6.03	9.0	6.59	4.32	5.24	11.41	3.51	1.51	1.57
Merged-chr3-51727935-1	chr3	51727835	51728035	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	L3b|LINE|CR1	66756.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.62	4.02	3.99	2.82	7.36	5.96	5.65	6.59	0.39	2.01	3.52	2.19
Merged-chr19-15201364-3	chr19	15201273	15201473	+	672.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-603190.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.83	5.28	10.84	11.66	9.82	6.9	6.64	14.58	4.72	8.03	15.07	5.64
Merged-chr5-130163902-1	chr5	130163802	130164002	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-7917.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	5.65	5.79	9.13	3.22	7.36	6.9	2.33	6.17	15.54	4.02	3.52	5.33
Merged-chr14-55746651-1	chr14	55746551	55746751	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026819)	promoter-TSS (NM_026819)	958.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	10.9	6.04	3.99	4.42	3.68	10.35	4.65	6.06	2.36	2.51	7.03	3.76
Merged-chr10-84886533-1	chr10	84886433	84886633	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024918, intron 15 of 17)	intron (NM_001024918, intron 15 of 17)	-31080.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	4.04	4.53	7.99	8.04	8.59	2.82	9.63	5.5	3.15	3.01	2.51	3.45
Merged-chr13-100873541-3	chr13	100873471	100873671	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40144.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.23	1.26	0.0	1.61	2.86	4.39	3.99	2.52	6.88	11.55	9.04	10.96
Merged-chr4-99928771-3	chr4	99928673	99928873	+	672.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-678.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	4.85	9.56	11.41	16.89	15.14	5.64	5.65	14.58	8.46	3.51	15.07	6.27
Merged-chr14-79519085-1	chr14	79518985	79519185	+	672.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	3411.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	5.79	0.0	4.42	6.95	4.39	8.97	2.66	4.72	7.03	2.51	6.58
Merged-chr3-27631710-2	chr3	27631610	27631810	+	672.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-46715.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	6.06	1.76	6.28	2.82	2.86	5.96	3.99	13.15	6.88	3.01	9.04	7.52
Merged-chr16-32164136-3	chr16	32164029	32164229	+	672.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1465.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	7.67	8.55	15.4	10.46	9.82	5.64	5.31	3.42	10.03	6.03	13.06	8.46
Merged-chr5-99324845-3	chr5	99324769	99324969	+	672.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-71942.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.48	6.29	7.99	11.26	5.73	8.78	5.31	5.97	6.69	2.01	4.52	4.39
Merged-chr15-38633718-3	chr15	38633608	38633808	+	672.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28196.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	14.13	6.79	6.85	8.85	9.0	4.7	6.31	8.33	7.67	8.03	14.57	7.52
Merged-chr13-49248210-2	chr13	49248113	49248313	+	672.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360772)	promoter-TSS (NM_001360772)	81.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.04	4.78	6.85	4.02	10.23	7.21	9.63	5.64	8.46	8.03	10.55	3.13
Merged-chr17-3149664-2	chr17	3149580	3149780	+	672.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 3 of 19)	MTC|LTR|ERVL-MaLR	34708.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	2.83	3.77	2.85	3.22	1.23	9.09	4.65	8.3	4.52	7.03	13.57	6.89
Merged-chr1-151001583-2	chr1	151001489	151001689	+	672.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8154.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	12.11	3.02	12.55	6.44	6.14	3.76	5.65	7.12	4.52	5.52	3.52	7.21
Merged-chr2-30624097-2	chr2	30624002	30624202	+	672.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29058.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	6.46	2.77	3.42	2.82	5.32	12.23	5.31	8.5	9.05	4.02	12.56	3.13
Merged-chr3-65938359-3	chr3	65938195	65938395	+	672.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19954.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.02	5.03	1.14	1.61	3.27	7.84	4.32	2.75	2.95	1.51	7.54	3.13
Merged-chr5-123013769-3	chr5	123013677	123013877	+	672.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1297.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	11.31	5.03	10.27	8.85	13.5	13.17	3.99	4.29	8.65	10.54	12.06	8.46
Merged-chr15-78903375-3	chr15	78903274	78903474	+	672.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316685, intron 6 of 17)	intron (NM_001316685, intron 6 of 17)	3606.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	6.86	3.52	7.99	5.23	9.82	7.21	3.99	5.78	16.72	21.09	5.53	5.95
Merged-chr19-11060125-3	chr19	11060007	11060207	+	672.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9541.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	7.27	7.04	15.97	3.62	9.82	9.09	6.64	4.96	16.33	13.56	10.55	4.39
Merged-chr4-45819249-1	chr4	45819149	45819349	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	7578.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	1.21	2.01	1.71	5.23	1.64	2.2	2.99	2.5	2.95	2.01	5.02	4.39
Merged-chr19-27429334-1	chr19	27429234	27429434	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	574.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	6.06	3.02	2.28	4.83	8.18	8.15	3.32	7.71	6.49	8.54	10.05	5.95
Merged-chr7-118741837-1	chr7	118741737	118741937	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	1566.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.4	2.01	1.71	1.61	4.09	1.25	1.99	1.96	7.67	5.02	7.03	12.22
Merged-chr6-13870454-1	chr6	13870354	13870554	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001352887, exon 3 of 3)	3' UTR (NM_001352887, exon 3 of 3)	1064.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	4.04	3.52	3.42	5.23	4.09	5.96	3.65	7.12	2.16	6.03	4.02	7.52
Merged-chr6-124260755-2	chr6	124260659	124260859	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28975.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	5.65	4.28	1.14	10.46	7.77	10.03	4.32	3.11	16.52	14.56	6.03	1.57
Merged-chr15-100228761-1	chr15	100228661	100228861	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007497, intron 1 of 6)	B2_Mm2|SINE|B2	902.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.0	1.76	1.14	3.62	1.23	3.45	1.66	2.36	10.03	2.01	5.02	8.14
Merged-chr7-101628606-1	chr7	101628506	101628706	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35162.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	4.44	0.0	6.85	3.62	2.45	5.96	1.99	5.19	1.18	2.51	0.5	0.63
Merged-chr1-77740620-2	chr1	77740483	77740683	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-225495.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	3.63	3.52	4.56	8.45	2.45	7.53	3.32	6.59	1.18	1.51	1.0	0.94
Merged-chr19-55286259-2	chr19	55286146	55286346	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 12 of 21)	intron (NM_027976, intron 12 of 21)	29790.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	3.63	6.54	3.42	0.8	7.36	3.14	3.65	5.8	9.83	8.03	11.05	6.89
Merged-chr6-61138606-1	chr6	61138506	61138706	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41719.0	NM_001164316	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	4.44	2.01	1.71	10.46	7.77	1.88	2.66	6.11	1.18	0.0	0.0	0.94
Merged-chr2-16155467-1	chr2	16155367	16155567	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	L1_Mus4|LINE|L1	-200837.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.04	4.53	3.42	4.42	3.68	2.51	4.98	5.64	3.15	7.53	6.53	6.89
Merged-chr17-33931650-2	chr17	33931539	33931739	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1745.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	6.46	5.03	6.85	0.4	5.73	4.7	5.31	5.52	5.51	5.52	4.52	6.58
Merged-chr7-24850402-1	chr7	24850302	24850502	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19289.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	4.04	1.51	0.57	0.0	2.45	4.39	5.98	6.28	1.57	3.51	1.0	3.45
Merged-chr19-23140270-3	chr19	23140156	23140356	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-970.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.06	7.29	0.57	4.83	10.23	14.11	2.33	7.96	7.08	5.02	14.57	5.33
Merged-chr17-34170968-1	chr17	34170868	34171068	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16362.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	6.06	4.28	3.42	4.02	4.5	5.02	5.31	6.0	7.67	7.03	5.02	3.76
Merged-chr4-148449126-2	chr4	148449012	148449212	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020009, intron 1 of 57)	intron (NM_020009, intron 1 of 57)	530.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	7.27	5.53	8.56	0.8	4.91	7.53	4.65	4.85	12.78	5.52	14.57	8.14
Merged-chr9-100497283-1	chr9	100497183	100497383	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001324530, exon 2 of 3)	exon (NM_001324530, exon 2 of 3)	9573.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.04	5.79	7.99	1.21	5.32	7.53	0.66	4.51	8.26	6.53	2.01	6.58
Merged-chr2-50112599-1	chr2	50112499	50112699	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	46170.0	NM_177139	320343.0	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	4.04	2.01	2.28	4.02	3.27	3.76	5.31	6.45	2.36	1.51	3.01	0.63
Merged-chr3-8098469-1	chr3	8098369	8098569	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143582.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	2.42	1.26	2.85	3.22	4.91	5.64	3.99	5.97	2.56	6.03	8.04	4.39
Merged-chr18-60802066-2	chr18	60801972	60802172	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	-1777.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.46	11.32	21.68	6.44	1.64	10.35	0.66	3.59	15.54	5.02	10.55	5.33
Merged-chr4-133753350-2	chr4	133753249	133753449	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	262.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	2.42	7.8	3.99	5.23	6.95	4.08	3.32	5.86	8.26	8.54	5.53	6.89
Merged-chr15-11987587-1	chr15	11987487	11987687	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011294, intron 3 of 4)	ORR1B1|LTR|ERVL-MaLR	8420.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	5.25	8.3	8.56	10.05	0.82	3.14	0.0	0.45	1.38	0.0	1.0	0.63
Merged-chrX-85873963-2	chrX	85873863	85874063	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	intron (NM_001163539, intron 1 of 1)	3690.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	9.29	5.28	5.13	0.8	2.45	1.88	3.65	5.21	19.08	11.55	12.06	1.88
Merged-chr14-120367112-1	chr14	120367012	120367212	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	60660.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.42	0.5	0.0	1.61	6.95	3.76	4.65	5.36	1.57	1.0	0.0	1.57
Merged-chr10-80824371-1	chr10	80824271	80824471	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	3.63	7.8	5.13	2.82	8.18	5.96	2.99	5.92	8.46	7.03	6.53	4.39
Merged-chr18-66041355-2	chr18	66041237	66041437	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38702.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	7.67	5.79	4.56	4.02	6.95	10.98	3.32	8.16	6.29	4.52	9.04	5.64
Merged-chr6-29243293-1	chr6	29243193	29243393	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26929.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.63	3.27	1.71	3.62	2.45	0.31	7.97	3.0	2.56	4.52	5.53	1.88
Merged-chr11-103016318-1	chr11	103016218	103016418	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	829.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.0	3.02	0.0	1.61	1.23	2.51	6.98	1.15	2.16	5.02	0.5	0.31
Merged-chr6-47471900-1	chr6	47471800	47472000	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355550, intron 1 of 21)	MTEa-int|LTR|ERVL-MaLR	17143.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	6.06	2.01	3.42	1.61	2.05	5.02	6.64	6.0	3.93	6.03	6.03	0.63
Merged-chr9-57440811-2	chr9	57440713	57440913	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-699.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.04	6.29	11.41	1.61	9.0	1.57	2.66	7.15	8.06	8.54	8.04	4.7
Merged-chr4-134589191-1	chr4	134589091	134589291	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-21340.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	2.26	0.0	0.8	11.45	6.9	9.63	5.94	5.31	2.51	3.52	7.52
Merged-chr8-83875401-1	chr8	83875301	83875501	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-24697.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	1.62	5.79	3.42	3.22	7.36	3.14	1.99	4.18	4.52	5.52	2.01	5.01
Merged-chr16-85151052-1	chr16	85150952	85151152	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	22655.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.04	4.28	11.41	4.02	6.14	2.2	5.31	6.36	6.1	2.51	3.52	5.33
Merged-chr18-32172232-1	chr18	32172132	32172332	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	9143.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.63	5.28	5.7	5.23	1.64	6.27	2.66	4.54	4.13	5.02	7.54	2.51
Merged-chr12-55480769-1	chr12	55480669	55480869	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11878.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	10.5	15.09	0.57	0.8	12.27	7.53	0.33	0.7	9.44	10.04	1.0	4.39
Merged-chrY-90803111-1	chrY	90803011	90803211	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	17669.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	4.04	1.01	1.14	0.8	3.27	0.0	2.66	0.0	7.87	14.06	6.53	10.02
Merged-chr3-54357801-2	chr3	54357716	54357916	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-3291.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.42	8.05	6.28	7.24	1.23	1.88	5.31	3.31	2.75	3.01	4.52	5.33
Merged-chr15-75747221-1	chr15	75747121	75747321	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_194350, exon 1 of 1)	exon (NM_194350, exon 1 of 1)	701.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	3.63	4.53	2.28	3.22	2.45	1.57	2.99	2.47	3.34	1.0	4.52	3.76
Merged-chr12-14056326-1	chr12	14056226	14056426	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95712.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.0	0.0	0.0	3.22	5.32	6.9	3.32	7.88	3.93	3.01	6.03	0.94
Merged-chr18-62922333-1	chr18	62922233	62922433	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133237)	promoter-TSS (NM_133237)	6.0	NM_133237	494504.0	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	3.23	5.53	2.28	4.83	0.82	2.51	9.97	7.93	3.93	1.0	5.53	0.94
Merged-chr2-152816449-1	chr2	152816349	152816549	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	12040.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	2.42	1.51	3.42	3.22	2.05	1.57	5.65	6.84	0.79	0.0	2.51	3.13
Merged-chr13-43173412-3	chr13	43173305	43173505	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1904.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	7.67	11.07	6.85	4.42	4.09	8.15	4.98	5.41	13.18	11.05	5.53	7.21
Merged-chr3-33308466-1	chr3	33308366	33308566	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165275.0	NM_001163516	58869.0	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	1.62	0.75	2.85	0.4	2.45	1.25	6.64	11.19	1.57	4.52	0.5	0.0
Merged-chr3-116333433-1	chr3	116333333	116333533	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	20811.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	7.27	3.52	3.99	3.22	5.32	14.11	3.65	5.52	4.72	8.54	7.54	5.95
Merged-chr6-99007708-1	chr6	99007608	99007808	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 7 of 17)	intron (NM_001197321, intron 7 of 17)	20590.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.23	1.26	0.0	5.63	5.32	2.51	2.33	8.24	2.36	3.01	2.01	2.51
Merged-chr1-46908722-1	chr1	46908622	46908822	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	17054.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.86	5.28	6.85	8.85	3.27	8.15	8.64	5.5	2.36	8.54	9.55	0.63
Merged-chr1-93174568-3	chr1	93174454	93174654	+	671.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310428, intron 1 of 31)	intron (NM_001310428, intron 1 of 31)	6131.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	9.29	4.28	11.41	4.02	6.55	5.33	4.98	7.4	11.41	9.54	8.54	9.4
Merged-chr16-8739755-2	chr16	8739667	8739867	+	671.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.04	4.02	3.42	2.41	11.05	5.33	6.31	9.39	7.08	5.02	9.55	8.46
Merged-chr4-107921447-2	chr4	107921322	107921522	+	671.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	2167.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	9.29	3.02	6.85	8.85	10.23	5.02	5.31	6.28	3.15	6.53	6.53	4.07
Merged-chr11-107326384-2	chr11	107326296	107326496	+	671.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-137015.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.42	3.77	2.28	6.44	14.32	0.31	7.97	6.67	9.64	2.01	6.03	5.64
Merged-chr5-120578881-2	chr5	120578780	120578980	+	671.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9733.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	12.11	4.78	11.98	9.65	10.64	5.33	3.32	7.4	6.29	7.53	5.53	9.08
Merged-chr6-124717559-3	chr6	124717452	124717652	+	671.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029554)	TTS (NR_029554)	433.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	7.27	5.53	9.7	2.41	11.86	1.57	5.65	7.85	14.16	5.02	8.04	5.95
Merged-chr4-49688777-2	chr4	49688688	49688888	+	671.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	-6805.0	NM_001004025	19059.0	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	6.46	3.52	6.85	4.02	4.09	8.78	2.99	8.05	9.44	11.05	17.08	6.89
Merged-chr10-8864046-2	chr10	8863946	8864146	+	671.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	22024.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.44	1.26	6.28	2.41	8.18	3.45	1.0	7.71	8.85	16.07	11.05	3.13
Merged-chr7-135520397-2	chr7	135520306	135520506	+	671.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	8248.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	7.27	7.29	7.99	3.22	13.09	8.78	10.96	5.72	4.33	5.02	9.04	5.33
Merged-chr11-77216836-1	chr11	77216736	77216936	+	671.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	411.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.44	4.78	1.71	3.62	7.77	7.53	5.65	5.3	7.28	9.54	10.05	5.95
Merged-chr4-122922978-3	chr4	122922849	122923049	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36873.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.46	4.78	10.27	7.24	8.18	5.96	10.3	8.83	3.74	8.03	7.03	9.71
Merged-chr14-73507838-3	chr14	73507764	73507964	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2185.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	8.48	9.06	5.7	0.8	6.14	5.64	4.98	8.19	5.31	9.54	10.55	5.95
Merged-chr18-9507276-3	chr18	9507162	9507362	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57108.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.23	8.3	7.42	7.64	6.55	4.39	7.64	19.09	10.42	9.04	4.52	9.08
Merged-chr5-103719348-3	chr5	103719245	103719445	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34817.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.65	4.28	9.13	12.47	9.0	2.51	4.32	7.32	9.83	5.52	21.61	7.83
Merged-chr10-43846369-3	chr10	43846266	43846466	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20459.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	5.65	7.04	10.84	1.21	6.14	5.02	6.31	5.86	15.34	6.03	8.54	6.58
Merged-chr7-83482818-3	chr7	83482714	83482914	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102117.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	8.08	8.05	7.99	4.02	3.27	10.03	4.98	11.97	8.26	8.03	14.57	7.52
Merged-chr2-156841925-2	chr2	156841835	156842035	+	671.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1928.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	2.42	8.05	9.13	4.02	5.32	7.53	8.64	5.38	4.92	3.51	5.02	5.01
Merged-chr4-136454939-2	chr4	136454833	136455033	+	671.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14828.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.65	2.52	2.28	3.22	10.23	7.53	2.66	7.35	8.65	8.54	1.51	4.39
Merged-chr4-86689679-4	chr4	86689581	86689781	+	671.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19622.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	10.09	8.3	7.42	6.84	8.59	9.09	14.28	14.44	4.92	6.53	3.52	5.01
Merged-chr11-115010434-3	chr11	115010285	115010485	+	671.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8505.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	4.44	6.79	6.85	6.84	4.91	7.53	4.65	2.19	7.87	7.03	10.55	2.82
Merged-chr2-132048340-1	chr2	132048240	132048440	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-18352.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.44	1.51	4.56	1.61	7.36	5.02	1.99	6.31	7.28	5.52	8.04	5.33
Merged-chr6-89300019-2	chr6	89299884	89300084	+	671.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14259.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	8.88	4.78	9.7	6.44	9.41	6.27	2.66	9.17	5.51	9.54	5.02	5.01
Merged-chr14-61301500-2	chr14	61301403	61301603	+	671.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033788, intron 1 of 2)	RMER4B|LTR|ERVK	3831.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	4.85	11.07	9.13	4.83	9.41	9.41	3.65	5.19	7.87	13.05	12.06	6.27
Merged-chr13-23427071-1	chr13	23426971	23427171	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_015492)	TTS (NR_015492)	-3205.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	4.44	4.78	3.42	8.04	5.73	6.59	3.99	6.45	1.38	1.0	4.52	5.01
Merged-chr5-92690788-1	chr5	92690688	92690888	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	7353.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	4.44	0.75	0.57	0.8	2.86	6.59	6.64	3.79	5.11	4.02	3.52	1.57
Merged-chr17-65906602-1	chr17	65906502	65906702	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20847.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.81	0.75	5.13	0.0	1.64	4.7	5.65	5.66	3.54	8.03	9.55	1.57
Merged-chr13-60684278-1	chr13	60684178	60684378	+	671.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	82067.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.4	4.53	14.83	4.42	2.86	1.88	2.33	2.8	10.62	4.52	5.02	4.39
Merged-chr6-128334580-1	chr6	128334480	128334680	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011657, exon 3 of 11)	exon (NM_011657, exon 3 of 11)	21271.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	5.65	5.28	3.42	4.83	7.77	8.47	2.99	9.7	6.88	8.03	8.54	8.46
Merged-chr5-33005620-2	chr5	33005536	33005736	+	671.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13180.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	8.88	8.05	6.28	13.67	12.68	5.33	8.3	4.77	5.51	3.51	6.03	8.14
Merged-chr10-127343266-2	chr10	127343151	127343351	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1672.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	7.27	6.29	1.14	4.83	8.59	6.59	2.33	9.67	7.47	11.05	4.02	6.89
Merged-chr17-48320438-1	chr17	48320338	48320538	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4276.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	1.62	1.76	2.85	6.44	8.18	6.9	4.98	5.78	11.6	5.02	8.54	4.39
Merged-chr6-65142876-1	chr6	65142776	65142976	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1854.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.04	6.54	2.28	2.41	2.05	3.76	7.31	14.92	4.13	7.53	3.52	5.33
Merged-chr12-25326104-1	chr12	25326004	25326204	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	196930.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.23	2.77	2.28	5.23	4.5	5.02	3.65	4.71	7.08	3.01	5.53	4.7
Merged-chr16-94599497-2	chr16	94599411	94599611	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11908.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.67	3.02	5.7	4.02	6.14	7.84	1.0	4.99	10.62	6.53	6.53	7.52
Merged-chr8-126597754-2	chr8	126597655	126597855	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4319.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.86	3.77	1.71	2.01	11.45	10.35	8.64	3.22	10.42	9.04	8.04	3.45
Merged-chr1-191272884-1	chr1	191272784	191272984	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	45234.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.62	0.25	3.42	6.03	5.73	4.7	1.99	7.88	0.98	2.01	2.01	3.45
Merged-chr7-75365690-1	chr7	75365590	75365790	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56428.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	2.02	4.02	2.85	2.82	0.82	5.96	4.98	5.83	2.56	2.51	1.0	0.31
Merged-chr5-28311069-1	chr5	28310969	28311169	+	671.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-6120.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	2.83	2.77	2.28	3.22	2.45	0.31	2.33	1.74	11.21	10.54	5.02	8.46
Merged-chr1-133034376-1	chr1	133034276	133034476	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-3789.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	8.08	4.28	3.99	5.63	4.91	7.21	7.31	4.71	5.9	6.53	11.05	4.07
Merged-chr9-60813670-1	chr9	60813570	60813770	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	19228.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	4.44	3.77	0.0	4.42	8.18	3.14	4.98	4.18	2.75	3.01	2.51	3.45
Merged-chr10-77371939-1	chr10	77371839	77372039	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	46334.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	1.62	1.26	6.28	2.41	9.82	6.9	2.66	6.14	3.74	3.01	6.03	6.58
Merged-chr7-74662154-2	chr7	74662062	74662262	+	671.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107382.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.04	7.29	13.12	7.64	2.45	0.63	4.65	1.68	13.57	20.59	20.6	6.58
Merged-chr5-66190564-3	chr5	66190462	66190662	+	671.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040695, intron 1 of 2)	intron (NR_040695, intron 1 of 2)	773.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	8.88	8.55	14.83	4.02	11.86	7.53	6.31	12.36	9.44	10.04	5.02	2.51
Merged-chr2-76677065-1	chr2	76676965	76677165	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1750.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	3.23	4.28	2.85	0.0	6.55	5.96	9.63	8.64	7.47	8.03	4.52	4.7
Merged-chr15-97248487-1	chr15	97248387	97248587	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172293, intron 1 of 5)	intron (NM_172293, intron 1 of 5)	-1200.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.23	5.79	5.7	10.05	6.95	7.21	4.65	6.67	5.9	4.02	4.52	5.01
Merged-chr7-45562379-1	chr7	45562279	45562479	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7451.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	6.46	4.78	5.7	2.41	13.5	8.47	5.98	6.22	4.72	1.0	7.54	2.51
Merged-chr1-170305194-1	chr1	170305094	170305294	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198955, intron 1 of 2)	intron (NM_001198955, intron 1 of 2)	1138.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	5.65	3.52	2.28	2.41	6.55	7.53	3.32	6.0	5.51	2.51	5.53	6.27
Merged-chr18-16252150-1	chr18	16252050	16252250	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-534104.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.81	2.01	0.0	3.62	7.36	7.53	5.31	7.01	7.28	2.01	4.52	2.19
Merged-chr4-83289421-1	chr4	83289321	83289521	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	34768.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.04	4.78	2.28	6.44	7.77	7.21	2.33	7.88	3.93	8.03	5.02	3.45
Merged-chr18-80712489-3	chr18	80712400	80712600	+	671.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	CpG	571.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	10.09	6.54	11.98	2.41	10.23	9.41	6.31	5.13	9.05	3.01	12.06	3.45
Merged-chr9-43034481-2	chr9	43034392	43034592	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359232, intron 4 of 40)	intron (NM_001359232, intron 4 of 40)	71226.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	21.0	3.27	10.27	4.83	15.14	4.39	5.98	10.07	8.26	5.52	9.04	9.08
Merged-chr5-99224804-2	chr5	99224793	99224993	+	671.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	28034.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.04	1.26	0.0	2.41	5.73	1.57	0.33	0.53	5.51	8.54	7.54	1.57
Merged-chr3-152404988-2	chr3	152404886	152405086	+	671.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	8302.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	8.08	7.04	3.42	5.63	6.55	3.76	6.98	8.86	11.41	8.03	6.53	2.82
Merged-chr6-148246727-2	chr6	148246659	148246859	+	671.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001347518, exon 15 of 19)	exon (NM_001347518, exon 15 of 19)	-34385.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	8.08	8.05	8.56	6.84	6.14	2.82	6.64	5.69	6.88	6.03	4.02	1.57
Merged-chr2-38451184-2	chr2	38451081	38451281	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60516.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.06	1.51	1.14	4.83	9.82	10.98	3.32	7.51	7.08	6.03	11.56	6.27
Merged-chr2-128123456-2	chr2	128123351	128123551	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028765, exon 18 of 18)	3' UTR (NM_028765, exon 18 of 18)	-2587.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	4.02	2.28	1.61	5.73	9.72	4.98	5.64	11.6	3.51	4.52	7.21
Merged-chr17-71448763-2	chr17	71448666	71448866	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028887, exon 6 of 48)	exon (NM_028887, exon 6 of 48)	26577.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	10.5	5.53	4.56	8.04	9.0	7.84	2.33	6.93	6.69	11.55	13.06	9.08
Merged-chr3-51788970-3	chr3	51788890	51789090	+	671.246033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	127811.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	11.71	6.04	6.85	9.65	6.55	3.76	6.31	13.18	9.05	12.55	10.55	8.14
Merged-chr16-33668468-3	chr16	33668378	33668578	+	671.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15988.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.04	6.04	8.56	6.03	9.0	9.41	7.64	7.57	7.67	12.05	9.55	4.7
Merged-chr8-105504809-1	chr8	105504709	105504909	+	671.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7907.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	4.04	3.02	8.56	0.8	7.36	10.66	11.96	6.11	6.49	7.03	9.04	6.27
Merged-chr15-6238398-2	chr15	6238283	6238483	+	671.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61406.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.25	10.56	3.99	2.41	6.95	4.7	8.97	5.72	13.77	6.53	11.05	4.39
Merged-chr5-123142273-2	chr5	123142179	123142379	+	671.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	86.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.65	5.53	7.42	3.22	3.27	10.35	7.97	4.65	10.03	6.53	10.05	9.08
Merged-chr18-46577661-3	chr18	46577570	46577770	+	671.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4a2|LINE|L1	-3137.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	10.9	20.63	9.13	0.4	11.45	31.67	7.64	3.48	14.55	11.05	6.03	3.76
Merged-chr10-21937505-2	chr10	21937418	21937618	+	671.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-41154.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.62	3.02	1.14	2.41	5.73	5.02	5.31	6.17	11.8	29.12	12.56	9.08
Merged-chr7-44384114-3	chr7	44384017	44384217	+	671.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-9.0	NM_001114116	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	4.85	3.77	7.99	10.46	8.59	8.47	4.65	7.6	10.62	9.54	9.55	10.02
Merged-chr4-53395073-1	chr4	53394973	53395173	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45340.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	2.02	2.26	12.55	2.41	5.32	1.57	1.99	5.5	3.54	5.02	4.02	5.95
Merged-chr10-95229627-1	chr10	95229527	95229727	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-83802.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	2.02	4.53	2.28	5.63	0.0	6.59	4.32	6.62	9.24	3.01	6.53	1.25
Merged-chr14-93651201-1	chr14	93651101	93651301	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	239468.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.23	4.28	2.28	0.8	7.77	3.14	1.33	8.92	6.69	4.02	2.01	3.76
Merged-chr10-59252133-1	chr10	59252033	59252233	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30211.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.27	4.02	3.99	1.21	5.73	7.21	1.33	4.6	4.33	10.04	7.54	5.64
Merged-chr4-154906318-1	chr4	154906218	154906418	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-7275.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	2.02	3.02	3.42	6.84	0.82	8.15	1.0	1.12	8.46	5.02	4.02	8.77
Merged-chr11-121041434-2	chr11	121041348	121041548	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1970.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	6.46	5.79	9.13	2.41	5.73	6.59	4.32	7.29	5.7	11.55	6.03	7.21
Merged-chrX-159237457-1	chrX	159237357	159237557	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18325.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	2.02	5.79	0.57	0.4	4.91	1.88	6.31	5.86	4.13	2.51	6.53	6.27
Merged-chr15-77801366-2	chr15	77801272	77801472	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	40803.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.85	4.53	5.13	2.41	9.0	5.33	8.3	5.55	8.85	8.54	10.55	6.27
Merged-chr18-10029153-1	chr18	10029053	10029253	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038589, intron 1 of 14)	intron (NM_001038589, intron 1 of 14)	660.0	NM_001360884	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	3.23	5.03	2.85	2.01	5.73	6.9	4.65	5.07	6.1	3.01	3.52	4.7
Merged-chr10-62557939-1	chr10	62557839	62558039	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028197)	TTS (NM_028197)	20518.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	6.86	7.04	6.85	3.22	4.91	8.47	1.66	4.32	14.75	4.02	4.52	8.46
Merged-chr8-40861819-1	chr8	40861719	40861919	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-548.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.0	0.5	0.0	1.61	0.0	0.0	1.33	0.79	11.01	6.03	9.55	4.7
Merged-chr4-41558702-1	chr4	41558602	41558802	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	L3|LINE|CR1	10825.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.0	0.0	0.0	3.62	1.64	1.88	0.33	0.84	6.1	5.52	14.07	13.16
Merged-chr9-61511548-1	chr9	61511448	61511648	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139182.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	1.62	3.52	5.7	4.02	6.14	3.45	3.65	6.36	4.33	4.02	7.03	6.27
Merged-chr5-21452034-1	chr5	21451934	21452134	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177869, intron 5 of 7)	intron (NM_177869, intron 5 of 7)	27131.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	1.62	0.25	1.14	4.02	6.55	4.39	1.33	7.43	3.74	3.01	7.54	2.19
Merged-chr11-46815498-1	chr11	46815398	46815598	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178759, exon 2 of 9)	exon (NM_178759, exon 2 of 9)	4699.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.42	8.8	5.7	0.0	6.55	6.27	3.32	3.48	7.47	11.05	6.03	2.82
Merged-chr12-3698989-1	chr12	3698889	3699089	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	ORR1D1|LTR|ERVL-MaLR	-107991.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.04	3.52	0.0	2.41	7.36	3.14	3.32	7.04	0.79	5.52	3.01	7.21
Merged-chr10-117375330-2	chr10	117375234	117375434	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	B1_Mur4|SINE|Alu	1639.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.86	5.28	4.56	2.41	6.95	11.92	1.99	5.92	11.6	10.54	14.07	5.33
Merged-chr19-17350624-2	chr19	17350515	17350715	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	6052.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	9.69	8.05	9.7	4.02	9.82	8.78	10.63	2.07	2.56	0.5	0.0	0.63
Merged-chr6-47650280-1	chr6	47650180	47650380	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4814.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	9.29	7.29	5.13	5.23	2.86	4.08	9.3	3.31	1.57	3.51	1.51	0.31
Merged-chr14-55758667-3	chr14	55758542	55758742	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009894)	promoter-TSS (NM_009894)	-218.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	5.25	9.81	9.13	9.65	9.82	6.59	5.31	6.59	8.26	4.52	4.02	6.27
Merged-chr4-86712775-1	chr4	86712675	86712875	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35780.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.81	0.75	1.14	0.0	7.77	4.08	9.3	7.29	2.75	4.52	6.03	2.51
Merged-chr2-4620314-1	chr2	4620214	4620414	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31821.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	5.65	5.28	11.41	2.41	4.91	4.39	0.0	1.82	11.21	9.04	11.05	3.13
Merged-chr1-92799776-1	chr1	92799676	92799876	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31869.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	2.42	1.26	1.14	0.0	6.14	1.88	4.65	3.53	2.36	1.0	1.51	1.25
Merged-chr7-114015538-1	chr7	114015438	114015638	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	102243.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.02	1.26	6.28	2.41	4.91	3.14	4.32	5.36	2.95	6.03	6.53	2.51
Merged-chr3-104793533-1	chr3	104793433	104793633	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007484, intron 4 of 4)	URR1A|DNA|hAT-Charlie	4499.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	3.23	2.01	4.56	3.22	1.64	4.08	2.99	5.38	3.74	5.52	2.01	1.88
Merged-chr4-6366924-2	chr4	6366813	6367013	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1233.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	1.62	4.53	6.28	9.65	4.5	15.37	5.65	7.85	10.03	2.01	7.03	3.45
Merged-chr13-92334703-1	chr13	92334603	92334803	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-20080.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.02	0.0	0.0	3.22	13.09	2.51	1.33	5.94	2.36	0.5	1.0	0.0
Merged-chr16-57216618-1	chr16	57216518	57216718	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	14848.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	7.67	4.78	1.14	3.62	6.55	3.76	8.3	6.67	7.08	14.06	10.05	8.46
Merged-chr11-120342779-1	chr11	120342679	120342879	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	4634.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	7.27	11.07	11.41	6.44	7.36	15.37	3.32	0.87	5.7	9.04	4.52	2.82
Merged-chr10-77032704-1	chr10	77032604	77032804	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-35.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	6.86	6.54	10.27	2.82	10.64	3.14	8.3	11.89	7.87	4.52	13.57	6.89
Merged-chr13-67609229-1	chr13	67609129	67609329	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163246, intron 1 of 3)	intron (NM_001163246, intron 1 of 3)	478.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	4.04	2.26	1.71	2.82	3.68	3.14	4.65	6.17	19.47	11.55	17.08	10.96
Merged-chr13-60668154-1	chr13	60668054	60668254	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	MLT1J|LTR|ERVL-MaLR	65943.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.21	2.26	3.42	0.0	6.95	2.2	2.66	6.34	5.7	4.52	3.52	2.19
Merged-chr1-153802677-2	chr1	153802597	153802797	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	41444.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	4.04	8.8	9.7	3.62	4.09	6.59	3.32	6.79	4.13	0.0	7.54	2.82
Merged-chr16-64748435-1	chr16	64748335	64748535	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22504.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	3.23	3.77	1.14	3.62	1.23	5.64	3.99	6.98	12.59	7.03	5.53	5.95
Merged-chr4-55335176-1	chr4	55335076	55335276	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-14866.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	5.25	2.77	0.57	3.62	4.91	3.76	5.65	8.75	4.92	2.01	5.53	4.07
Merged-chr1-91347044-1	chr1	91346944	91347144	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033292, exon 9 of 9)	3' UTR (NM_001033292, exon 9 of 9)	-4029.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	3.23	5.53	0.0	5.63	4.5	5.96	2.99	3.81	3.93	4.52	3.01	4.7
Merged-chr5-66138225-1	chr5	66138125	66138325	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12753.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	1.26	2.28	1.61	4.91	0.31	3.32	1.23	13.57	5.52	11.56	7.52
Merged-chr13-63278293-1	chr13	63278193	63278393	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18854.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	2.83	1.26	0.0	4.02	11.45	10.03	4.98	4.57	5.51	5.52	6.03	4.7
Merged-chr16-50415478-1	chr16	50415378	50415578	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	16911.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	1.21	2.01	2.28	3.22	7.77	2.2	1.99	5.72	1.97	1.0	5.02	2.51
Merged-chr3-152464419-1	chr3	152464319	152464519	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081277, intron 13 of 13)	L1MC2|LINE|L1	67735.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	1.62	1.51	2.28	2.41	2.45	6.59	3.99	7.77	1.97	3.01	7.54	2.82
Merged-chr3-159528641-1	chr3	159528541	159528741	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029523, intron 11 of 11)	intron (NM_029523, intron 11 of 11)	33208.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.4	4.78	1.14	1.61	1.23	0.94	2.66	4.79	3.34	3.01	3.52	3.45
Merged-chr13-5872926-1	chr13	5872826	5873026	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11437.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	10.5	7.04	0.57	0.0	3.27	4.7	0.0	2.07	2.16	1.51	5.53	0.94
Merged-chr2-165873947-2	chr2	165873844	165874044	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	4493.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.04	7.8	1.14	0.8	9.0	10.03	6.31	1.63	9.83	14.06	7.03	3.13
Merged-chr6-87513575-3	chr6	87513463	87513663	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-17236.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.85	6.54	4.56	6.84	7.36	9.41	0.0	4.18	11.6	9.04	17.59	11.9
Merged-chr8-25362872-1	chr8	25362772	25362972	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56602.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	1.21	2.01	0.0	1.61	3.27	4.7	2.66	6.03	3.93	3.51	1.51	3.45
Merged-chr1-60096725-1	chr1	60096625	60096825	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021312, intron 1 of 12)	MTD|LTR|ERVL-MaLR	1182.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	2.42	3.52	3.99	3.22	2.86	6.27	6.64	5.86	6.29	9.54	2.51	6.27
Merged-chrX-137019479-1	chrX	137019379	137019579	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082412, intron 4 of 6)	intron (NM_001082412, intron 4 of 6)	18823.0	NM_001082412	67062.0	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	4.85	1.76	0.57	4.02	3.27	5.96	2.66	4.57	5.9	7.03	17.59	4.39
Merged-chr18-27022087-2	chr18	27021996	27022196	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1267939.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.81	1.76	1.71	4.83	6.14	7.21	2.99	6.08	8.65	6.53	25.12	5.01
Merged-chr19-47901970-1	chr19	47901870	47902070	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	17329.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.4	4.28	3.99	3.62	2.45	2.51	3.65	5.78	1.57	3.51	4.52	4.7
Merged-chr18-82861910-1	chr18	82861810	82862010	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	6013.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.85	6.79	5.7	6.84	14.73	11.92	8.97	6.95	5.7	10.54	5.53	8.77
Merged-chr9-119266192-1	chr9	119266092	119266292	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34500.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	3.63	5.28	2.28	7.64	7.36	7.84	7.97	8.86	1.77	1.0	0.5	1.88
Merged-chrX-129777494-1	chrX	129777394	129777594	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	HAL1|LINE|L1	27752.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	8.08	2.52	0.0	8.04	3.27	6.27	1.33	5.58	4.13	9.54	8.04	3.76
Merged-chr18-65416464-3	chr18	65416353	65416553	+	670.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	X7A_LINE|LINE|CR1	-14544.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	10.9	2.77	8.56	4.83	14.32	13.48	8.64	10.37	8.26	0.5	9.04	2.51
Merged-chr2-93642760-3	chr2	93642654	93642854	+	670.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007442, exon 1 of 4)	exon (NM_007442, exon 1 of 4)	320.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	13.33	6.79	13.69	3.22	1.64	6.27	3.32	6.03	4.92	9.04	11.05	4.39
Merged-chr8-40449396-2	chr8	40449301	40449501	+	670.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357249, intron 3 of 12)	intron (NM_001357249, intron 3 of 12)	25586.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	5.25	5.03	10.27	8.85	11.86	8.15	7.97	11.86	1.97	6.53	3.52	2.51
Merged-chr15-97789180-3	chr15	97789066	97789266	+	670.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	4801.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	10.9	6.29	9.13	8.04	11.45	9.41	8.3	3.48	9.64	4.02	6.53	9.4
Merged-chr6-124481736-2	chr6	124481632	124481832	+	670.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11381.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	6.06	15.34	2.85	4.83	6.14	7.53	4.65	6.28	11.41	15.57	10.55	6.89
Merged-chr4-105226439-3	chr4	105226347	105226547	+	670.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 5 of 5)	intron (NM_080555, intron 5 of 5)	69100.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.46	9.06	6.85	6.84	10.64	9.09	10.3	12.31	7.87	10.54	16.08	18.48
Merged-chr4-108780060-2	chr4	108779953	108780153	+	670.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	CpG	1035.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	10.09	11.07	7.99	9.25	2.86	5.02	11.96	4.6	4.33	7.03	2.51	7.21
Merged-chr5-110232519-2	chr5	110232405	110232605	+	670.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027922, intron 1 of 12)	intron (NM_027922, intron 1 of 12)	1501.0	NM_027922	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	5.65	8.05	0.57	8.85	12.27	4.08	5.65	11.1	4.72	2.51	5.02	2.82
Merged-chr13-9846954-3	chr13	9846870	9847070	+	670.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81649.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.44	8.05	4.56	11.26	8.18	3.45	13.29	6.25	12.0	8.03	11.56	7.52
Merged-chr6-124480459-3	chr6	124480380	124480580	+	670.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-12633.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	7.67	11.82	3.99	8.04	4.91	11.6	3.32	5.21	10.23	17.57	12.06	9.08
Merged-chr11-102496368-3	chr11	102496276	102496476	+	670.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-26493.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	8.88	8.55	4.56	2.01	14.73	8.15	2.33	8.64	7.47	4.52	7.54	6.89
Merged-chr16-15984986-2	chr16	15984897	15985097	+	670.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97711.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.67	8.05	10.27	6.84	4.5	5.96	3.32	4.71	7.47	7.03	6.53	2.82
Merged-chrX-13282826-2	chrX	13282733	13282933	+	670.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010028, intron 1 of 16)	intron (NM_010028, intron 1 of 16)	1811.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	5.65	1.76	6.85	2.41	6.14	9.41	4.65	6.34	6.88	13.56	8.54	6.58
Merged-chr1-156540353-2	chr1	156540259	156540459	+	670.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18428.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	12.11	4.53	5.7	9.65	2.05	10.03	3.65	10.49	2.36	1.51	4.52	1.25
Merged-chr2-77288271-2	chr2	77288161	77288361	+	670.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7669.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	10.5	7.55	6.85	2.41	9.41	11.6	0.33	3.22	12.39	4.52	4.52	4.07
Merged-chr11-8708330-1	chr11	8708230	8708430	+	670.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43795.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.42	7.29	1.14	0.8	6.95	5.96	1.66	7.26	4.92	4.02	6.03	3.76
Merged-chr11-118469987-2	chr11	118469896	118470096	+	670.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57-int|LTR|ERV1	-6836.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	6.46	5.03	11.98	6.03	11.45	4.39	11.63	5.5	7.67	6.03	13.06	7.52
Merged-chr9-119979062-1	chr9	119978962	119979162	+	670.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	L2|LINE|L2	3961.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	5.65	6.04	10.84	8.85	9.82	5.96	5.65	5.86	11.01	3.51	6.03	4.07
Merged-chrX-102075118-3	chrX	102075043	102075243	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 4 of 7)	intron (NM_001163610, intron 4 of 7)	-3836.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	11.31	7.29	2.85	4.83	9.0	7.21	3.32	9.03	7.28	10.04	10.55	6.58
Merged-chr8-121580207-3	chr8	121580110	121580310	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1404.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	5.65	7.8	7.99	6.44	4.91	5.96	3.65	5.66	13.37	8.03	14.57	4.39
Merged-chr2-124707044-3	chr2	124706946	124707146	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53465.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.23	6.29	9.13	8.85	10.23	7.53	6.98	11.66	7.28	11.55	15.58	12.53
Merged-chr11-26203647-3	chr11	26203556	26203756	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	1416.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	5.65	5.53	8.56	4.83	6.95	9.72	4.32	14.89	5.11	10.54	21.1	10.02
Merged-chr1-170365845-2	chr1	170365746	170365946	+	670.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 4 of 9)	MTD|LTR|ERVL-MaLR	56985.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.0	0.5	0.0	0.0	6.55	5.02	12.62	5.1	10.03	5.02	12.56	7.83
Merged-chr4-149990516-2	chr4	149990405	149990605	+	670.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12731.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.04	5.53	6.28	2.01	11.05	8.47	8.97	7.46	8.26	6.53	8.54	4.39
Merged-chrX-20946214-2	chrX	20946127	20946327	+	670.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007922, intron 1 of 5)	intron (NM_007922, intron 1 of 5)	4381.0	NM_007922	13712.0	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding	11.71	8.3	9.13	6.44	7.36	6.59	8.97	7.29	6.29	23.1	10.05	5.01
Merged-chr6-83107797-2	chr6	83107689	83107889	+	670.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081266, exon 8 of 9)	exon (NM_001081266, exon 8 of 9)	-1319.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	6.46	7.04	2.28	2.41	6.14	7.84	5.31	7.23	7.67	16.57	12.06	8.46
Merged-chr2-18872964-3	chr2	18872870	18873070	+	670.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-71152.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	10.5	3.27	2.85	4.83	9.41	6.27	0.33	6.11	10.42	12.55	11.05	9.71
Merged-chr12-98274055-3	chr12	98273958	98274158	+	670.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	5423.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.85	6.79	7.42	10.05	11.45	6.59	8.97	9.14	8.65	0.5	8.04	10.96
Merged-chr13-74010585-6	chr13	74010481	74010681	+	670.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	1162.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	4.04	6.29	10.27	3.62	6.95	8.15	8.64	5.3	2.36	6.03	5.02	6.89
Merged-chr18-84584434-2	chr18	84584329	84584529	+	670.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	5075.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	5.65	3.77	5.7	1.61	8.18	8.47	3.32	5.07	10.42	9.54	14.07	8.77
Merged-chr15-85671153-3	chr15	85671061	85671261	+	670.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-32612.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	7.67	12.83	6.85	5.23	8.59	3.76	8.64	8.44	9.83	10.54	8.04	7.21
Merged-chr9-21040693-2	chr9	21040591	21040791	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-8363.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	8.08	9.31	1.14	6.84	6.55	6.59	8.3	6.7	11.41	3.51	6.03	5.64
Merged-chr14-120342122-1	chr14	120342022	120342222	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	35670.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.04	6.29	2.85	3.22	4.5	6.59	7.64	7.51	7.08	9.04	18.09	3.76
Merged-chr8-35496196-1	chr8	35496096	35496296	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-663.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	8.88	5.79	1.14	6.03	6.14	6.59	8.97	5.72	3.93	8.03	5.53	2.19
Merged-chr10-8846447-1	chr10	8846347	8846547	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	39623.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.02	1.01	3.42	4.02	4.91	10.35	4.98	5.38	3.74	6.03	1.0	4.39
Merged-chr5-108270752-2	chr5	108270651	108270851	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	1854.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	6.86	3.27	8.56	6.03	16.36	12.86	4.65	7.26	8.26	5.02	9.55	5.01
Merged-chrX-152147561-2	chrX	152147468	152147668	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	intron (NM_001114664, intron 1 of 14)	3300.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	2.02	8.8	10.84	3.22	4.09	6.59	1.66	6.45	3.93	2.51	5.53	5.33
Merged-chr8-74980887-1	chr8	74980787	74980987	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12763.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	3.23	4.02	7.42	6.03	2.45	5.96	4.65	5.8	5.31	1.0	3.52	3.45
Merged-chr11-52223110-1	chr11	52223010	52223210	+	670.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8885.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	5.65	7.04	4.56	3.62	5.32	7.84	0.33	4.51	9.24	9.04	14.57	8.46
Merged-chr2-170355112-2	chr2	170355017	170355217	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029815, intron 11 of 12)	MLT1B|LTR|ERVL-MaLR	-1244.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.86	9.06	10.27	12.47	4.91	3.45	5.98	7.71	6.29	5.52	6.53	3.13
Merged-chr19-26604190-1	chr19	26604090	26604290	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-970.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.25	3.02	1.71	5.63	6.95	7.84	2.66	5.44	1.38	4.52	9.55	2.82
Merged-chr6-125145724-2	chr6	125145635	125145835	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_138747)	TTS (NM_138747)	511.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	11.71	10.06	11.41	9.25	1.64	9.41	4.65	3.53	5.9	9.04	14.07	10.34
Merged-chr11-45539637-2	chr11	45539543	45539743	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-268440.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	4.04	7.55	7.99	12.47	9.41	6.9	2.99	11.05	6.88	6.03	22.61	7.83
Merged-chr16-59570976-1	chr16	59570876	59571076	+	670.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15224.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	2.42	0.0	0.57	0.0	0.0	0.31	0.0	0.73	11.6	5.52	10.05	13.47
Merged-chr3-79811777-2	chr3	79811701	79811901	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30861.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.23	6.04	8.56	5.63	3.27	1.25	3.32	6.0	1.18	1.51	4.02	0.94
Merged-chr5-25420797-2	chr5	25420694	25420894	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081383, intron 2 of 58)	intron (NM_001081383, intron 2 of 58)	77989.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	1.62	4.02	6.85	3.22	3.27	9.72	1.33	5.55	11.6	4.52	12.06	2.82
Merged-chr13-59848231-2	chr13	59848131	59848331	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-25084.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.25	9.31	2.85	14.08	0.41	0.63	6.31	0.98	11.6	7.03	7.03	4.7
Merged-chr17-26233083-1	chr17	26232983	26233183	+	670.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	B3|SINE|B2	11159.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.81	3.02	0.57	1.61	1.23	3.76	0.66	2.3	10.62	9.54	8.04	7.83
Merged-chr14-118986874-2	chr14	118986758	118986958	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081252, exon 39 of 39)	3' UTR (NM_001081252, exon 39 of 39)	48926.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.63	3.27	1.14	0.8	7.36	13.17	3.99	6.62	14.75	9.04	5.53	6.89
Merged-chr8-25264417-1	chr8	25264317	25264517	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	41853.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	9.29	4.53	2.28	0.0	6.55	8.47	3.32	5.33	10.23	3.01	7.03	4.7
Merged-chr3-51652929-3	chr3	51652797	51652997	+	670.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8282.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	6.06	4.78	6.28	12.47	9.41	10.35	5.98	8.72	8.06	8.54	11.56	5.33
Merged-chr3-97965589-3	chr3	97965488	97965688	+	670.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	35415.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	8.88	7.8	9.13	13.27	7.77	11.6	8.97	15.73	11.21	7.53	8.54	6.89
Merged-chr6-137455830-2	chr6	137455736	137455936	+	670.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011216, intron 25 of 26)	intron (NM_011216, intron 25 of 26)	45115.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	7.27	2.77	10.84	1.21	11.45	7.21	7.64	7.12	7.87	9.04	5.53	5.64
Merged-chr2-90575886-2	chr2	90575758	90575958	+	670.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4789.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.04	4.78	5.7	2.01	6.95	12.86	2.99	4.77	19.28	9.54	6.53	4.39
Merged-chr1-170613424-2	chr1	170613330	170613530	+	670.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23581.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.44	2.77	1.14	1.61	13.09	10.98	8.64	7.18	12.39	6.53	9.55	5.01
Merged-chr8-106964860-1	chr8	106964760	106964960	+	670.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	29110.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	6.46	4.53	2.28	5.23	6.95	6.27	5.31	6.64	8.65	1.0	5.53	5.01
Merged-chr13-37452275-1	chr13	37452175	37452375	+	670.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	106930.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.67	4.53	3.42	0.8	6.55	7.53	5.65	6.7	5.51	4.02	7.03	1.57
Merged-chr19-34571176-3	chr19	34571089	34571289	+	670.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008332, intron 2 of 2)	RMER17C|LTR|ERVK	-12340.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	3.63	2.77	0.57	2.82	4.09	4.39	5.31	3.93	8.26	8.03	6.53	5.64
Merged-chr1-184174615-2	chr1	184174532	184174732	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140251.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	6.06	6.04	7.42	16.49	11.05	5.64	2.66	8.89	4.52	5.52	17.59	7.83
Merged-chr14-75229967-2	chr14	75229865	75230065	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001247984, exon 16 of 16)	3' UTR (NM_001247984, exon 16 of 16)	-12322.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	5.25	3.52	5.7	2.01	6.95	2.82	7.64	5.02	8.65	9.54	9.04	7.52
Merged-chr14-50060687-1	chr14	50060587	50060787	+	670.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	23992.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	8.85	9.54	13.06	6.89
Merged-chr3-119772966-2	chr3	119772877	119773077	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	10411.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.23	4.78	7.99	4.42	5.73	6.27	7.64	7.15	6.69	13.56	16.58	7.21
Merged-chr15-82236742-1	chr15	82236642	82236842	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178269, intron 4 of 4)	RSINE1|SINE|B4	7594.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	1.62	5.53	1.71	10.05	13.5	7.84	6.31	6.87	7.28	7.53	6.03	2.19
Merged-chr1-87098756-2	chr1	87098639	87098839	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081082, exon 11 of 11)	exon (NM_001081082, exon 11 of 11)	2867.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	3.23	4.02	5.7	2.82	3.68	9.72	5.98	5.33	6.88	3.01	13.06	6.58
Merged-chr1-39313845-2	chr1	39313717	39313917	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008719, intron 7 of 20)	intron (NM_008719, intron 7 of 20)	-54034.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	1.62	2.52	5.13	4.02	4.09	3.76	2.33	5.61	10.62	7.03	9.55	4.07
Merged-chr19-34562687-3	chr19	34562572	34562772	+	670.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	11584.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	8.48	8.05	12.55	5.23	6.95	8.15	5.65	8.75	12.39	11.05	7.54	6.58
Merged-chr13-37346714-3	chr13	37346623	37346823	+	670.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	1378.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.46	6.29	2.28	8.04	9.82	8.47	2.99	5.19	9.24	7.53	13.57	6.89
Merged-chr17-35578386-3	chr17	35578258	35578458	+	670.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10873.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	6.86	8.55	2.28	2.01	7.36	11.29	3.32	9.03	6.88	10.54	8.54	10.02
Merged-chr7-45741874-1	chr7	45741774	45741974	+	670.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	604.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.0	0.0	3.42	0.8	1.64	1.88	2.66	1.71	8.46	9.54	9.55	9.4
Merged-chr10-95514059-3	chr10	95513968	95514168	+	670.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-1094.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	5.25	10.31	3.42	8.04	8.18	20.38	7.31	4.85	11.21	7.03	5.53	9.4
Merged-chr1-95397365-2	chr1	95397259	95397459	+	670.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83731.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.81	5.28	1.14	0.0	5.32	11.6	5.31	8.13	8.46	8.03	13.06	9.08
Merged-chr10-19171241-2	chr10	19171153	19171353	+	670.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	4015.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	11.31	3.52	4.56	6.03	9.82	17.56	1.0	6.22	10.82	14.06	13.06	8.46
Merged-chr4-120869036-2	chr4	120868955	120869155	+	670.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182929, intron 1 of 7)	L2b|LINE|L2	14256.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	7.67	6.79	2.28	10.86	10.64	5.96	4.32	7.82	6.29	7.53	7.03	4.07
Merged-chr11-98814105-3	chr11	98813997	98814197	+	670.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-4008.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	9.29	7.29	15.97	12.47	6.14	13.17	6.31	12.67	7.08	2.51	11.56	9.08
Merged-chr8-18946048-3	chr8	18945945	18946145	+	670.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 2 of 6)	intron (NM_176951, intron 2 of 6)	4826.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.04	6.04	6.85	4.02	4.5	9.09	4.98	10.18	6.49	7.53	8.54	2.82
Merged-chr10-66909377-3	chr10	66909284	66909484	+	670.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11000.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	11.31	7.29	4.56	3.22	11.05	6.9	2.66	6.79	9.44	14.06	16.08	9.4
Merged-chr12-69475558-3	chr12	69475432	69475632	+	670.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038060)	promoter-TSS (NR_038060)	18.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.67	11.82	6.28	11.26	8.59	11.29	8.97	10.93	7.28	10.04	7.03	2.51
Merged-chr7-5052884-1	chr7	5052784	5052984	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_026900, exon 2 of 2)	exon (NM_026900, exon 2 of 2)	1352.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	4.44	1.76	0.0	2.82	5.73	3.45	1.66	3.5	1.97	3.01	4.02	1.25
Merged-chr11-99200881-1	chr11	99200781	99200981	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30136.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	3.63	2.01	10.84	4.02	12.68	6.59	2.66	6.39	3.74	11.55	19.09	2.19
Merged-chr3-107775904-2	chr3	107775795	107775995	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15426.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	11.31	7.8	1.14	4.02	0.0	14.42	2.99	0.73	13.57	20.59	9.55	1.25
Merged-chr2-181277010-2	chr2	181276902	181277102	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	10964.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	2.42	1.51	2.28	3.22	2.45	6.59	4.98	8.33	8.46	5.02	4.02	7.52
Merged-chr10-55980272-1	chr10	55980172	55980372	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126645.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	2.83	5.03	0.0	2.01	4.91	5.96	9.63	5.19	4.13	7.03	5.02	4.07
Merged-chr3-89438839-1	chr3	89438739	89438939	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	2135.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	3.63	6.04	3.42	4.83	4.91	6.59	2.99	5.33	4.52	0.5	3.52	2.51
Merged-chr3-142314252-1	chr3	142314152	142314352	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019809, intron 4 of 7)	intron (NM_019809, intron 4 of 7)	77598.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.63	1.51	5.7	4.42	1.64	8.47	0.66	5.3	7.87	3.01	11.05	6.58
Merged-chr2-163438404-1	chr2	163438304	163438504	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144891)	promoter-TSS (NM_144891)	-63.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0.0	1.26	0.0	1.21	2.86	5.96	3.65	3.25	1.77	10.04	0.0	2.19
Merged-chr8-26350797-1	chr8	26350697	26350897	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	192628.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	2.83	2.26	2.85	2.82	2.05	7.53	4.32	9.0	1.38	0.0	2.01	3.45
Merged-chr1-143994057-1	chr1	143993957	143994157	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MYSERV-int|LTR|ERVK	10092.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	10.9	7.8	3.99	2.01	0.0	1.25	1.33	0.76	0.79	1.51	2.01	0.94
Merged-chr10-127055573-1	chr10	127055473	127055673	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033262)	TTS (NM_001033262)	4611.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	10.09	6.04	5.7	3.22	4.09	1.25	4.98	5.55	4.33	10.54	4.52	4.7
Merged-chr14-9637869-1	chr14	9637769	9637969	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	L2|LINE|L2	-246226.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.63	5.53	7.99	4.83	3.27	4.08	4.98	7.21	5.11	7.53	2.51	8.14
Merged-chr11-45627297-1	chr11	45627197	45627397	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-180786.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	1.62	2.52	0.0	4.42	6.95	1.88	2.99	5.5	3.74	0.5	6.03	3.13
Merged-chr16-8869881-1	chr16	8869781	8869981	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	39781.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	7.67	5.53	6.85	4.02	5.73	3.14	3.32	3.56	4.33	3.51	9.04	1.25
Merged-chr1-119087848-1	chr1	119087748	119087948	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34229.0	NM_001081125	14633.0	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	3.23	2.26	0.0	3.62	5.73	0.94	6.64	1.18	3.93	3.51	1.0	3.45
Merged-chr2-180702921-2	chr2	180702808	180703008	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-806.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	9.69	3.77	1.14	0.8	11.45	10.66	4.98	3.62	7.08	6.53	8.54	10.65
Merged-chr13-49355647-1	chr13	49355547	49355747	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	14098.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.4	4.78	0.57	3.22	4.91	1.88	4.65	4.91	3.54	2.01	2.01	1.88
Merged-chr18-32894426-2	chr18	32894318	32894518	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13745.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	3.23	4.53	3.42	3.22	4.09	9.41	0.66	5.05	12.0	8.54	9.55	3.76
Merged-chr19-47864881-1	chr19	47864781	47864981	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-664.0	NM_030051	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	1.62	2.01	1.14	1.61	1.64	0.63	1.99	1.18	9.83	6.53	13.57	5.33
Merged-chr1-135691699-1	chr1	135691599	135691799	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28364.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.63	2.52	2.28	2.41	2.45	7.53	3.99	5.52	1.97	2.01	3.52	0.0
Merged-chr17-36060994-1	chr17	36060894	36061094	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2623.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	3.23	3.52	5.13	3.22	1.23	5.02	7.64	6.9	4.92	7.03	6.53	5.64
Merged-chr8-27677338-1	chr8	27677238	27677438	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	229668.0	NM_027618	70952.0	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	4.04	2.77	2.28	1.61	0.82	6.59	2.66	4.77	2.36	3.51	4.52	4.7
Merged-chr19-26711441-1	chr19	26711341	26711541	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011416, intron 25 of 32)	intron (NM_011416, intron 25 of 32)	-36724.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.85	9.06	1.71	10.05	6.14	4.7	2.33	1.37	4.13	6.03	1.0	0.0
Merged-chr10-77591048-1	chr10	77590948	77591148	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145925, intron 3 of 5)	intron (NM_145925, intron 3 of 5)	9393.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	11.31	7.55	1.14	1.21	8.18	4.7	4.32	5.64	9.83	6.53	6.03	4.39
Merged-chr13-15853243-2	chr13	15853126	15853326	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	45983.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.0	4.53	7.99	0.8	2.45	7.53	1.99	5.58	18.49	9.04	8.04	7.52
Merged-chr8-117338387-2	chr8	117338275	117338475	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	-10795.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.85	3.02	4.56	4.02	17.59	6.9	5.31	9.95	6.49	6.03	11.56	7.21
Merged-chr5-61846533-1	chr5	61846433	61846633	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37690.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	3.23	2.77	0.0	2.01	8.59	3.14	2.66	6.45	7.67	1.51	4.52	5.01
Merged-chr5-36574328-1	chr5	36574228	36574428	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	MIRb|SINE|MIR	8069.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.25	2.77	11.41	4.83	4.5	7.84	4.32	6.31	2.95	2.51	9.04	3.76
Merged-chr10-30844590-1	chr10	30844490	30844690	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1807.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	6.46	4.53	1.71	2.41	2.05	1.57	8.3	5.44	1.77	1.0	4.52	3.76
Merged-chr19-4044361-1	chr19	4044261	4044461	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-2140.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	10.5	4.28	1.14	4.02	10.23	10.98	1.66	2.78	6.69	8.54	6.53	4.39
Merged-chr13-107953940-1	chr13	107953840	107954040	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63876.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	3.23	1.26	5.7	5.63	0.0	2.51	5.65	6.03	2.36	2.01	2.51	2.82
Merged-chr13-49220799-1	chr13	49220699	49220899	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4773.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	5.25	2.77	2.85	1.61	9.41	4.08	1.33	3.95	11.01	8.54	11.05	5.95
Merged-chr7-122258134-1	chr7	122258034	122258234	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30991.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.04	1.76	3.99	9.25	5.73	3.45	2.33	5.97	3.54	6.53	5.02	9.08
Merged-chr1-186116471-1	chr1	186116371	186116571	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146106, intron 1 of 4)	intron (NM_146106, intron 1 of 4)	839.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	6.46	10.06	3.42	6.03	2.05	0.94	3.65	2.07	1.57	0.0	1.51	3.13
Merged-chr6-124732041-1	chr6	124731941	124732141	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1113.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	4.04	2.26	6.85	3.22	15.14	1.25	5.98	4.4	5.31	5.52	7.03	4.7
Merged-chr3-51289343-2	chr3	51289266	51289466	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-11852.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.46	6.79	5.7	10.46	6.55	10.35	1.33	7.21	5.31	6.53	6.03	6.27
Merged-chr1-191391525-3	chr1	191391434	191391634	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	5507.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	8.08	6.79	1.14	6.44	4.09	5.96	3.32	9.03	13.57	11.55	8.54	6.58
Merged-chr16-32598284-1	chr16	32598184	32598384	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10612.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	4.04	1.76	1.14	0.8	2.05	4.39	6.64	4.71	2.56	0.0	1.0	2.82
Merged-chr13-97959329-1	chr13	97959229	97959429	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012026, intron 22 of 35)	L1MD1|LINE|L1	208217.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	2.83	1.51	3.42	5.63	2.05	6.9	4.98	5.89	1.97	2.01	3.52	3.13
Merged-chr15-25825903-1	chr15	25825803	25826003	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17395.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.81	0.75	5.13	0.8	2.05	5.64	1.0	5.27	1.97	1.0	1.0	3.76
Merged-chr17-27586837-1	chr17	27586737	27586937	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-21110.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.02	5.79	3.42	4.42	0.0	0.31	0.0	1.01	6.1	6.03	14.57	10.34
Merged-chr5-115051009-1	chr5	115050909	115051109	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	RLTR17|LTR|ERVK	39485.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	8.88	8.55	6.28	8.85	1.64	2.51	0.66	2.13	15.14	5.02	10.05	4.07
Merged-chr7-110552492-1	chr7	110552392	110552592	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	62428.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	4.44	6.54	6.28	6.03	2.05	2.51	4.98	5.36	2.95	1.51	6.03	4.39
Merged-chr9-66894235-1	chr9	66894135	66894335	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	25470.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	1.21	2.01	4.56	0.0	2.05	12.54	3.32	5.61	1.38	3.01	4.52	1.25
Merged-chr12-119026441-2	chr12	119026356	119026556	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-60035.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	6.06	9.31	4.56	4.83	1.23	4.08	3.99	6.59	7.08	5.52	2.01	7.52
Merged-chr12-26315085-1	chr12	26314985	26315185	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 7 of 8)	intron (NM_080563, intron 7 of 8)	-31625.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	9.29	6.79	2.28	1.61	10.64	4.39	10.96	2.27	2.56	1.51	3.52	3.76
Merged-chr13-73793285-2	chr13	73793174	73793374	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 7 of 24)	ORR1D2|LTR|ERVL-MaLR	29577.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	4.04	3.77	12.55	8.45	6.95	2.51	2.99	7.01	8.46	2.51	11.56	5.33
Merged-chr7-116477661-1	chr7	116477561	116477761	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-26708.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	2.42	2.01	0.0	0.8	10.64	4.08	1.99	5.3	4.52	11.05	5.02	1.57
Merged-chr14-60733097-1	chr14	60732997	60733197	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001310594, exon 1 of 10)	5' UTR (NM_001310594, exon 1 of 10)	193.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	1.62	4.28	0.0	5.23	5.32	1.57	1.33	3.03	1.57	7.53	4.52	4.39
Merged-chr4-132599929-1	chr4	132599829	132600029	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	35862.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.23	1.26	0.0	2.41	1.64	0.94	5.65	4.6	2.56	3.01	0.0	0.94
Merged-chrX-48284389-1	chrX	48284289	48284489	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045916, intron 1 of 3)	intron (NR_045916, intron 1 of 3)	1037.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	6.46	4.53	0.57	4.83	4.09	6.9	1.99	6.14	5.11	9.54	7.54	3.13
Merged-chr15-64039011-2	chr15	64038907	64039107	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	20757.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.27	7.29	3.42	4.83	4.09	7.84	1.99	5.72	6.88	8.03	5.53	3.13
Merged-chr5-105056635-1	chr5	105056535	105056735	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3074.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	6.06	12.58	0.0	2.41	5.32	5.96	3.32	0.76	11.6	11.05	1.51	1.25
Merged-chr19-5714223-2	chr19	5714124	5714324	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9753.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	6.46	6.54	7.99	0.8	6.55	4.39	6.31	4.43	9.64	5.02	6.53	6.58
Merged-chr3-65882215-1	chr3	65882115	65882315	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	76034.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.29	3.77	1.14	4.83	10.23	5.64	2.33	3.87	5.11	7.53	5.02	3.76
Merged-chr17-33993121-1	chr17	33993021	33993221	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	7212.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	11.31	8.8	1.71	0.8	3.27	2.2	1.0	0.03	6.29	1.0	1.51	0.31
Merged-chr10-80163093-1	chr10	80162993	80163193	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4746.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	10.09	5.03	2.85	2.41	3.27	5.96	2.66	6.98	8.26	0.5	8.54	5.95
Merged-chr18-80312440-1	chr18	80312340	80312540	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51814.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.04	9.06	1.71	10.05	6.95	2.51	4.32	3.34	4.92	6.03	5.02	1.57
Merged-chr6-108444619-2	chr6	108444543	108444743	+	669.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-45100.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.21	2.26	4.56	4.42	9.41	8.15	4.98	7.26	11.01	6.53	5.02	10.34
Merged-chr18-38494887-3	chr18	38494792	38494992	+	669.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75985.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.48	6.79	7.99	12.87	6.55	5.96	5.65	7.71	8.85	12.55	11.05	5.64
Merged-chr1-9967358-4	chr1	9967225	9967425	+	669.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285425, exon 1 of 2)	exon (NM_001285425, exon 1 of 2)	160.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	4.04	6.04	6.28	7.64	3.68	5.96	6.64	8.58	8.85	5.52	9.04	10.65
Merged-chr14-118090113-2	chr14	118090011	118090211	+	669.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37865.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	5.25	5.79	7.99	11.26	7.77	5.33	13.62	6.98	7.08	2.51	9.04	11.59
Merged-chr9-90270330-2	chr9	90270241	90270441	+	669.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	CpG	428.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.27	6.04	3.99	5.63	4.91	3.76	8.64	4.29	11.21	12.55	15.07	8.46
Merged-chr9-109892858-3	chr9	109892753	109892953	+	669.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007658, exon 15 of 15)	3' UTR (NM_007658, exon 15 of 15)	3210.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	13.73	10.56	6.85	6.03	6.95	4.7	3.65	5.89	9.83	8.03	8.04	7.83
Merged-chrX-99197780-2	chrX	99197681	99197881	+	669.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	61720.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.0	5.28	10.84	18.1	6.95	5.02	1.33	3.17	10.62	4.52	12.06	7.21
Merged-chr13-46929480-2	chr13	46929364	46929564	+	669.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010617, intron 1 of 37)	CpG	254.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	6.86	9.81	9.13	14.88	11.45	4.7	19.27	6.36	4.33	8.54	6.53	1.88
Merged-chr17-12810615-2	chr17	12810511	12810711	+	669.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-40905.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.44	6.54	3.42	7.24	6.14	2.82	8.97	10.93	5.7	10.54	10.05	7.52
Merged-chr11-106329345-2	chr11	106329246	106329446	+	669.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-14784.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.5	0.0	0.0	2.86	7.84	3.32	7.09	3.93	8.54	11.56	10.65
Merged-chr13-58572895-3	chr13	58572782	58572982	+	669.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022317, intron 8 of 17)	intron (NM_022317, intron 8 of 17)	37995.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	8.08	5.79	7.42	16.09	9.82	7.84	13.29	13.15	7.67	2.51	9.04	4.7
Merged-chr9-63737597-2	chr9	63737483	63737683	+	669.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	20411.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	1.21	5.03	5.7	2.01	6.14	8.47	6.64	6.79	6.88	2.51	7.54	6.58
Merged-chr7-142393940-1	chr7	142393840	142394040	+	669.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6070.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.06	4.28	9.13	6.84	2.86	3.76	4.32	9.39	9.24	11.55	5.02	8.46
Merged-chr17-36182542-2	chr17	36182433	36182633	+	669.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3756.0	NR_033619	625785.0	Mm.390996	NR_033619		Gm6623	EG625785	akirin 1 pseudogene	pseudo	10.09	3.77	7.99	8.85	8.59	8.78	7.64	9.45	0.2	1.0	2.51	1.57
Merged-chr17-26705656-2	chr17	26705547	26705747	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10003.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.04	6.79	1.14	1.61	11.05	9.09	2.66	7.18	8.46	11.05	9.04	5.64
Merged-chr4-139116429-2	chr4	139116343	139116543	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	14594.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	9.69	4.53	8.56	5.63	5.73	6.59	5.65	6.31	7.47	4.02	12.06	7.83
Merged-chr17-45629314-2	chr17	45629233	45629433	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001013767)	TTS (NM_001013767)	-27231.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	14.13	7.29	10.84	4.83	5.32	11.29	4.65	6.76	15.74	5.52	8.04	5.95
Merged-chr6-114250488-2	chr6	114250383	114250583	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172890)	TTS (NM_172890)	-32152.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	3.63	7.29	5.7	2.82	9.82	10.66	5.98	4.99	6.88	5.52	12.56	5.95
Merged-chr8-117470519-2	chr8	117470417	117470617	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11252.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	4.44	5.53	3.42	5.63	7.77	3.76	1.99	5.72	7.47	10.54	2.51	5.01
Merged-chr1-138582447-2	chr1	138582351	138582551	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	LTR16A|LTR|ERVL	37306.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	11.31	6.04	4.56	10.05	2.86	6.27	3.65	7.74	3.54	3.51	8.04	5.95
Merged-chr13-17914792-2	chr13	17914702	17914902	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	29415.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	4.04	2.52	7.99	4.02	4.09	2.51	5.65	6.53	12.19	1.51	10.05	10.02
Merged-chr13-107784141-1	chr13	107784041	107784241	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	96744.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.46	3.52	3.42	2.41	6.14	3.45	4.98	7.32	5.31	4.52	12.06	1.88
Merged-chr3-126628137-1	chr3	126628037	126628237	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31186.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.06	1.76	7.99	9.65	3.27	5.64	5.65	5.38	2.75	5.52	5.02	5.01
Merged-chr17-14988040-2	chr17	14987938	14988138	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001123370, intron 9 of 11)	intron (NM_001123370, intron 9 of 11)	9174.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	9.29	7.8	5.13	4.02	8.59	9.09	7.97	5.41	2.36	1.51	1.0	6.89
Merged-chr19-46303879-3	chr19	46303770	46303970	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-867.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	13.33	6.54	11.98	8.04	5.32	13.8	5.31	10.12	11.41	13.56	8.54	10.02
Merged-chr1-80660662-3	chr1	80660551	80660751	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	4701.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	7.67	6.54	10.84	9.25	8.18	7.53	6.64	14.92	10.23	1.51	18.59	9.71
Merged-chr7-122196916-1	chr7	122196816	122197016	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10685.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	9.69	4.78	2.28	2.82	7.36	9.09	4.65	6.9	6.1	4.02	14.07	5.33
Merged-chr9-118922112-2	chr9	118922008	118922208	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4428.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	6.06	6.79	0.0	4.42	4.91	6.27	1.33	6.17	5.11	8.54	7.54	9.08
Merged-chr14-63467776-1	chr14	63467676	63467876	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31382.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	3.23	2.77	5.7	6.84	9.82	3.45	6.64	5.27	10.23	4.52	12.06	1.88
Merged-chr14-40934380-1	chr14	40934280	40934480	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	13829.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	1.21	4.28	11.41	5.63	7.36	2.51	6.98	5.36	3.15	2.01	7.03	5.33
Merged-chr12-115328555-1	chr12	115328455	115328655	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	367239.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	15.75	8.3	11.41	23.33	0.0	0.0	0.0	0.0	0.79	1.0	0.0	1.88
Merged-chr19-17321930-1	chr19	17321830	17322030	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	17575.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	15.34	7.04	4.56	10.05	8.18	1.25	2.99	3.62	1.38	1.0	2.51	5.64
Merged-chr8-104403735-1	chr8	104403635	104403835	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7928.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	4.85	6.29	3.99	8.45	5.32	5.02	1.33	4.93	12.78	8.54	8.54	2.82
Merged-chr7-123211071-2	chr7	123210972	123211172	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3794.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	11.31	7.29	7.99	5.23	8.18	3.76	3.32	5.66	8.06	4.52	7.54	3.13
Merged-chr14-33118537-1	chr14	33118437	33118637	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 13 of 58)	intron (NM_001146022, intron 13 of 58)	66529.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	2.02	2.01	3.42	2.82	4.91	5.33	8.3	6.81	1.97	3.51	7.54	1.25
Merged-chr14-103475111-1	chr14	103475011	103475211	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38230.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	1.21	3.77	0.0	2.41	0.0	0.31	1.99	0.48	4.13	4.52	3.52	0.31
Merged-chr15-27629968-3	chr15	27629857	27630057	+	669.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	736.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	7.67	8.55	17.11	6.03	4.91	9.09	2.33	8.27	6.49	13.05	8.54	6.27
Merged-chr19-15990333-2	chr19	15990230	15990430	+	669.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	L1M4b|LINE|L1	5255.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.04	7.55	7.99	4.42	7.36	8.15	4.65	7.93	9.05	11.05	12.56	6.89
Merged-chr19-10970798-1	chr19	10970698	10970898	+	669.400024	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023529, intron 1 of 8)	intron (NM_023529, intron 1 of 8)	3872.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	4.04	4.53	13.69	7.64	0.41	4.08	2.99	2.64	3.15	5.02	2.51	0.94
Merged-chr3-144572395-2	chr3	144572295	144572495	+	669.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1968.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	6.86	4.02	4.56	4.83	8.18	6.27	4.65	8.21	8.06	6.53	13.06	7.21
Merged-chr8-15043038-2	chr8	15042946	15043146	+	669.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037972, exon 2 of 2)	non-coding (NR_037972, exon 2 of 2)	3032.0	NR_037972	434285.0	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.4	5.28	3.42	4.02	10.23	3.14	5.98	6.79	7.67	3.51	11.05	4.39
Merged-chrX-155147136-2	chrX	155147028	155147228	+	669.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081671, intron 1 of 2)	intron (NM_001081671, intron 1 of 2)	721.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	9.69	8.55	5.7	6.03	11.86	11.29	4.32	6.48	0.0	4.02	6.03	1.25
Merged-chr14-106692385-2	chr14	106692298	106692498	+	669.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-205878.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.63	7.55	6.28	9.25	8.59	9.09	8.3	15.08	1.57	2.51	0.5	1.88
Merged-chr15-103552293-2	chr15	103552185	103552385	+	669.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12796.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	4.44	5.79	13.12	7.24	7.77	6.9	4.32	7.01	9.64	13.56	9.55	9.71
Merged-chr16-43930284-2	chr16	43930170	43930370	+	669.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027801, intron 6 of 15)	intron (NM_027801, intron 6 of 15)	40368.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	2.83	1.51	5.7	4.02	8.18	6.59	3.99	9.08	9.05	3.01	13.06	6.58
Merged-chr8-123357884-1	chr8	123357784	123357984	+	669.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172287, intron 6 of 14)	intron (NM_172287, intron 6 of 14)	-15827.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	2.02	3.02	4.56	3.22	2.45	11.92	1.99	3.34	9.05	9.54	15.58	6.89
Merged-chr12-51666825-1	chr12	51666725	51666925	+	669.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-24141.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	4.44	6.29	4.56	4.83	9.82	6.9	7.64	5.02	6.69	10.04	4.02	2.19
Merged-chr6-28899105-1	chr6	28899005	28899205	+	669.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67358.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.04	3.52	7.42	3.22	8.18	10.03	2.66	4.21	8.65	0.5	5.02	6.58
Merged-chr8-12757485-3	chr8	12757406	12757606	+	669.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015804, intron 1 of 28)	CpG	490.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	2.83	3.27	3.42	4.02	2.45	4.39	1.99	5.66	5.7	8.03	8.04	10.65
Merged-chr11-107321730-3	chr11	107321672	107321872	+	669.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-132391.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	9.29	4.02	10.84	5.23	8.18	7.21	1.99	6.2	9.83	5.02	7.54	9.08
Merged-chr5-123395511-3	chr5	123395450	123395650	+	669.277771	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	752.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	3.63	1.76	4.56	2.41	10.23	6.9	6.64	5.5	6.88	6.53	12.06	9.71
Merged-chrX-21089372-2	chrX	21089260	21089460	+	669.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183185)	promoter-TSS (NM_183185)	-131.0	NM_183185	245368.0	Mm.220470	NM_183185	ENSMUSG00000031079	Zfp300	D930016N04Rik	zinc finger protein 300	protein-coding	2.42	2.52	1.71	4.02	9.41	6.27	6.64	6.98	4.52	2.51	11.56	7.21
Merged-chr5-99269273-2	chr5	99269160	99269360	+	669.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16333.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	11.71	2.52	9.13	8.85	9.82	9.72	5.31	6.64	8.46	6.53	5.02	5.95
Merged-chr15-63985873-3	chr15	63985780	63985980	+	669.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	12186.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.65	7.04	3.42	9.25	25.77	7.53	7.31	9.7	8.46	13.56	11.56	8.46
Merged-chr18-83011840-3	chr18	83011737	83011937	+	669.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91277.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	5.65	13.08	1.71	0.4	7.36	15.99	2.33	5.3	12.0	12.55	13.06	13.47
Merged-chr4-135801684-2	chr4	135801585	135801785	+	669.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085509, intron 27 of 36)	intron (NM_001085509, intron 27 of 36)	41970.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	6.06	8.55	4.56	7.64	10.23	9.09	6.31	6.53	11.01	10.04	8.04	7.52
Merged-chr11-100612329-2	chr11	100612250	100612450	+	669.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	MLTR14|LTR|ERV1	7818.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	6.46	7.29	6.85	2.82	8.18	6.27	4.98	7.99	6.69	4.02	7.54	8.46
Merged-chr17-34951028-2	chr17	34951008	34951208	+	669.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028527)	promoter-TSS (NR_028527)	-100.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	6.46	0.5	4.56	0.8	6.14	3.45	0.0	1.6	4.72	2.01	4.02	3.13
Merged-chr3-89393099-3	chr3	89392956	89393156	+	669.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	322.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	1.21	4.02	1.14	2.41	2.86	6.9	4.98	3.42	11.41	5.52	13.06	4.39
Merged-chr18-32187451-3	chr18	32187344	32187544	+	669.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	24355.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	10.09	6.29	13.12	3.62	11.05	10.35	4.65	7.35	10.62	5.02	5.02	6.27
Merged-chr5-118473717-1	chr5	118473617	118473817	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87002.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.83	4.78	0.0	0.0	6.55	11.29	8.97	4.68	2.56	3.51	0.5	2.19
Merged-chr3-51494721-1	chr3	51494621	51494821	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016858, exon 2 of 2)	3' UTR (NM_016858, exon 2 of 2)	10755.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	6.46	6.04	12.55	4.42	0.82	3.45	5.98	7.88	6.69	2.01	6.03	5.01
Merged-chr13-45311681-1	chr13	45311581	45311781	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78061.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.42	2.01	3.42	5.63	1.64	1.88	3.99	3.56	11.6	12.55	13.06	10.96
Merged-chr2-104105479-2	chr2	104105376	104105576	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	9675.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	4.44	3.27	11.98	9.25	9.82	13.48	9.3	6.95	5.51	6.03	6.03	4.39
Merged-chr2-127135464-1	chr2	127135364	127135564	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-1510.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	1.62	7.29	5.13	5.63	6.55	5.64	2.99	1.82	14.16	6.03	10.05	3.45
Merged-chr13-104940078-1	chr13	104939978	104940178	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76185.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	2.02	2.52	0.0	2.41	0.82	2.51	5.98	3.0	2.95	0.5	4.02	1.25
Merged-chr8-105706005-1	chr8	105705905	105706105	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_198299, intron 4 of 7)	B1_Mm|SINE|Alu	2163.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	8.88	4.02	12.55	5.63	3.27	2.51	1.99	0.39	3.74	5.02	3.01	5.01
Merged-chr2-140718446-2	chr2	140718340	140718540	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-46964.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	6.86	2.26	15.97	11.26	5.73	4.39	5.98	7.09	5.51	2.01	11.05	1.25
Merged-chr13-44923057-1	chr13	44922957	44923157	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025772, intron 9 of 9)	intron (NM_025772, intron 9 of 9)	79039.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.63	4.28	1.71	8.85	7.77	6.9	3.65	6.67	3.93	3.51	9.04	1.25
Merged-chr4-145354062-1	chr4	145353962	145354162	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38915.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.81	2.77	3.99	2.41	1.23	2.51	0.66	4.43	12.39	4.02	9.55	4.07
Merged-chr12-100131909-1	chr12	100131809	100132009	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290303, intron 10 of 13)	intron (NM_001290303, intron 10 of 13)	19578.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.65	8.8	11.41	3.22	3.27	3.14	6.31	4.77	5.7	9.04	4.52	2.82
Merged-chr5-72867599-2	chr5	72867489	72867689	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	859.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.81	6.29	3.42	6.84	2.86	4.7	10.63	7.63	2.75	3.51	3.52	3.45
Merged-chr6-47780604-1	chr6	47780504	47780704	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	23048.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	12.11	4.78	6.85	9.25	13.5	6.59	3.32	5.07	6.1	6.03	4.52	2.51
Merged-chr12-103368667-1	chr12	103368567	103368767	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-8227.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	5.25	4.28	5.7	3.22	6.95	5.64	2.99	6.9	7.08	8.03	9.55	5.33
Merged-chr15-6568680-2	chr15	6568603	6568803	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11144.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.65	7.29	5.7	1.61	4.5	1.88	3.32	5.94	11.41	8.54	6.03	8.77
Merged-chr3-10418343-1	chr3	10418243	10418443	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21787.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	1.76	6.85	1.61	0.41	8.15	3.32	6.5	4.92	3.01	1.0	3.13
Merged-chr1-120528241-1	chr1	120528141	120528341	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23217.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.44	2.52	1.14	0.8	0.0	1.57	1.66	1.12	8.46	11.55	11.05	5.64
Merged-chr4-134120358-2	chr4	134120250	134120450	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026257, intron 8 of 14)	MIR|SINE|MIR	8403.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	1.62	2.52	5.7	3.22	10.23	7.53	0.0	3.79	11.21	15.57	4.02	3.45
Merged-chrX-72023733-1	chrX	72023633	72023833	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31884.0	NM_007724	12789.0	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	1.21	4.02	5.7	4.83	3.27	6.27	1.0	5.89	4.13	6.03	13.06	6.27
Merged-chr2-11492606-1	chr2	11492506	11492706	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177752, exon 3 of 14)	exon (NM_001177752, exon 3 of 14)	9484.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.04	8.55	9.13	5.63	4.09	3.14	4.98	5.94	4.92	0.5	8.04	5.01
Merged-chr16-10417492-1	chr16	10417392	10417592	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	5554.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	6.46	8.55	7.42	4.42	6.95	8.47	6.31	7.99	18.69	7.53	8.04	4.7
Merged-chr6-92940337-1	chr6	92940237	92940437	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015530)	promoter-TSS (NR_015530)	-245.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.4	0.5	0.0	0.8	3.68	3.76	3.65	5.69	0.2	0.0	0.0	0.31
Merged-chr2-45003752-1	chr2	45003652	45003852	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	19425.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	6.46	0.0	0.0	3.22	9.0	10.03	2.33	2.47	5.51	4.52	3.01	2.51
Merged-chr14-76964716-1	chr14	76964616	76964816	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71901.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	6.06	3.52	0.0	4.02	2.05	4.39	4.98	6.31	1.38	7.53	0.0	3.13
Merged-chr17-63400912-1	chr17	63400812	63401012	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	Lx7|LINE|L1	-87939.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.04	6.54	5.7	4.83	0.0	5.96	2.99	2.24	12.78	5.02	13.57	7.52
Merged-chr9-46173154-1	chr9	46173054	46173254	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-55476.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	4.85	4.53	9.7	3.22	10.23	5.96	2.99	7.07	5.9	6.03	3.52	3.45
Merged-chr2-160175260-1	chr2	160175160	160175360	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	152234.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.04	5.53	0.0	7.24	7.36	4.7	2.33	5.52	8.65	5.52	10.55	5.33
Merged-chr4-3796093-1	chr4	3795993	3796193	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39562.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.21	7.29	1.71	3.62	2.45	7.53	3.99	5.13	3.54	5.02	5.53	6.89
Merged-chrX-12761354-1	chrX	12761254	12761454	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045852)	promoter-TSS (NR_045852)	619.0	NM_012005	26896.0	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	7.27	5.28	0.57	3.22	5.32	7.21	5.98	4.82	4.13	4.02	7.54	9.08
Merged-chr19-10580942-2	chr19	10580851	10581051	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362431, intron 3 of 7)	intron (NM_001362431, intron 3 of 7)	3503.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	9.69	7.8	7.99	8.85	7.77	14.11	3.99	3.42	10.23	5.52	13.57	2.51
Merged-chrX-167263690-1	chrX	167263590	167263790	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	URR1B|DNA|hAT-Charlie	639.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.81	2.26	2.28	0.4	3.27	3.14	5.31	5.89	4.92	6.03	3.01	2.51
Merged-chr2-119970758-1	chr2	119970658	119970858	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1941.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	2.42	0.75	7.99	2.41	4.91	5.64	0.66	6.53	5.9	5.52	11.05	3.76
Merged-chr2-9990369-1	chr2	9990269	9990469	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58240.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	4.04	4.02	0.0	7.24	4.09	1.88	4.32	6.93	4.92	2.01	8.54	4.39
Merged-chr1-87028929-1	chr1	87028829	87029029	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	60999.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	3.23	1.01	2.85	3.22	0.82	2.2	3.65	6.59	4.33	4.02	8.04	4.07
Merged-chr2-148050583-1	chr2	148050483	148050683	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3614.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	6.46	4.78	5.7	5.63	2.86	5.02	0.0	3.48	13.57	11.05	12.56	8.46
Merged-chr1-84251429-3	chr1	84251314	84251514	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	Lx8|LINE|L1	-32453.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	5.65	6.79	4.56	6.03	4.91	8.15	2.33	8.75	12.19	7.53	9.55	6.89
Merged-chr10-8879382-1	chr10	8879282	8879482	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	6688.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.04	11.57	1.14	8.04	6.55	12.54	4.98	3.62	12.59	6.03	4.52	4.07
Merged-chr8-11323358-1	chr8	11323258	11323458	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-10532.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	1.62	4.78	2.28	4.02	4.91	11.29	1.66	4.85	4.72	10.54	5.53	2.19
Merged-chr10-84381690-2	chr10	84381589	84381789	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	58782.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.06	5.28	11.41	13.67	4.09	5.96	5.65	5.94	2.36	0.0	4.02	2.19
Merged-chr4-123686977-1	chr4	123686877	123687077	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2617.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	3.63	2.52	2.28	1.61	4.09	6.59	1.0	3.59	3.34	4.52	6.53	2.82
Merged-chr12-52474615-2	chr12	52474520	52474720	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5989.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.23	7.04	2.28	6.84	3.27	8.78	3.65	5.13	6.29	3.51	3.01	5.64
Merged-chr17-45559960-1	chr17	45559860	45560060	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008690, intron 3 of 5)	intron (NM_008690, intron 3 of 5)	-3976.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	4.44	5.79	3.99	0.4	2.86	6.9	0.0	0.14	1.18	4.52	3.01	0.0
Merged-chr11-80144345-1	chr11	80144245	80144445	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2192.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	2.42	4.28	3.42	4.02	11.05	5.02	8.64	6.7	5.31	6.03	5.02	1.57
Merged-chr5-123866654-2	chr5	123866556	123866756	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1140.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.86	4.53	12.55	5.63	5.32	5.33	0.0	3.73	16.13	5.52	10.05	7.83
Merged-chr19-40744363-1	chr19	40744263	40744463	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	84593.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.83	5.79	6.28	5.23	11.86	10.66	6.64	5.97	4.13	7.03	10.05	3.13
Merged-chr9-3016066-2	chr9	3015949	3016149	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	22694.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	21.0	16.1	20.54	15.28	15.55	8.47	23.92	66.39	2.75	4.02	2.51	2.51
Merged-chr18-47917740-1	chr18	47917640	47917840	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5101.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.0	1.01	3.42	4.83	2.05	5.96	2.66	11.05	5.7	4.52	3.01	1.57
Merged-chr19-46740793-1	chr19	46740693	46740893	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_020577, exon 11 of 11)	3' UTR (NM_020577, exon 11 of 11)	-20816.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	2.42	2.52	5.7	2.41	3.27	8.15	6.64	5.33	4.52	4.52	6.53	3.76
Merged-chr7-80696581-1	chr7	80696481	80696681	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7704.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	6.06	2.52	2.28	2.41	5.32	6.59	0.66	0.7	4.72	12.05	4.52	6.89
Merged-chr3-96938920-2	chr3	96938824	96939024	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12873.0	NM_008123	14616.0	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	4.85	6.79	5.7	6.84	5.73	13.17	4.65	5.13	8.65	8.03	6.03	7.83
Merged-chr10-84337882-3	chr10	84337784	84337984	+	668.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A|LTR|ERVK	102587.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.86	5.53	10.27	9.65	6.55	6.59	10.63	5.1	7.47	13.56	3.52	5.64
Merged-chr1-163910495-3	chr1	163910398	163910598	+	668.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-18602.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	4.04	9.06	1.14	9.65	11.05	11.29	11.29	7.15	15.34	8.03	21.61	8.77
Merged-chr11-78465709-2	chr11	78465619	78465819	+	668.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026740)	promoter-TSS (NM_026740)	18.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	3.63	7.04	6.28	2.41	13.09	11.92	11.96	4.57	6.1	4.02	8.54	5.33
Merged-chr9-114727491-2	chr9	114727414	114727614	+	668.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3689.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.23	2.77	6.85	4.02	10.23	10.35	1.99	6.45	10.03	11.55	11.05	10.34
Merged-chr4-45513572-2	chr4	45513470	45513670	+	668.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	17258.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.83	7.04	2.28	8.04	10.64	10.98	1.99	5.36	5.31	9.04	7.03	3.13
Merged-chr1-180640960-2	chr1	180640885	180641085	+	668.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	-165.0	NM_001103182	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	13.33	7.04	9.13	11.26	3.27	7.84	9.63	6.11	8.26	13.05	21.1	5.01
Merged-chr10-40189826-3	chr10	40189748	40189948	+	668.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6-int|LTR|ERV1	-47594.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	12.11	4.02	4.56	8.85	6.55	4.7	4.98	11.02	9.64	8.54	9.55	6.89
Merged-chr11-120721572-3	chr11	120721439	120721639	+	668.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	71.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	7.67	5.53	3.42	5.23	8.59	7.53	3.99	5.89	7.47	8.54	13.06	7.21
Merged-chr10-60285162-2	chr10	60285034	60285234	+	668.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	673.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	2.42	4.02	14.26	9.65	6.55	4.39	4.65	10.32	14.55	5.52	9.55	6.27
Merged-chr1-80326175-2	chr1	80326083	80326283	+	668.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016716, intron 1 of 15)	MIR|SINE|MIR	14507.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	8.88	2.01	3.99	0.8	9.0	6.27	4.98	9.06	11.6	10.04	14.57	1.88
Merged-chr17-56276241-1	chr17	56276141	56276341	+	668.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	526.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	1.21	12.58	1.14	4.83	6.14	7.53	5.31	6.03	7.28	11.55	11.05	9.08
Merged-chr15-66034093-1	chr15	66033993	66034193	+	668.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-57289.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	4.44	3.77	6.28	1.61	5.73	7.53	5.98	6.22	7.28	7.53	4.02	6.89
Merged-chr4-46585220-2	chr4	46585135	46585335	+	668.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	16694.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.46	1.76	17.68	8.04	8.18	4.39	4.98	5.92	2.36	2.51	0.5	2.51
Merged-chr10-25410945-3	chr10	25410852	25411052	+	668.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	2584.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	13.33	9.81	11.98	8.85	12.68	6.59	6.31	3.25	13.18	10.54	10.05	4.07
Merged-chr19-47405747-3	chr19	47405650	47405850	+	668.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	58661.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	12.11	5.53	9.13	6.03	10.64	10.35	14.95	10.93	7.47	6.53	2.01	8.77
Merged-chr17-45708403-3	chr17	45708291	45708491	+	668.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22042.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	8.48	16.35	31.38	12.07	2.86	5.64	2.66	6.17	9.05	9.54	9.55	5.33
Merged-chr11-75625495-1	chr11	75625395	75625595	+	668.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008850, exon 11 of 12)	exon (NM_008850, exon 11 of 12)	-5525.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	1.62	1.26	1.14	3.62	4.09	14.11	4.98	7.54	1.97	3.51	4.02	4.39
Merged-chr7-24851066-1	chr7	24850966	24851166	+	668.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18625.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	3.23	1.26	1.14	4.02	11.05	6.27	7.31	7.79	7.47	16.57	9.55	6.89
Merged-chr6-121247181-2	chr6	121247076	121247276	+	668.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	1270.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	6.46	2.77	6.85	5.23	9.0	4.08	3.65	4.82	9.44	1.51	4.02	5.01
Merged-chr7-3706713-2	chr7	3706621	3706821	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029767, exon 5 of 5)	exon (NM_029767, exon 5 of 5)	2680.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	10.5	7.29	7.99	5.63	4.91	10.35	5.65	3.28	4.13	7.03	4.52	1.57
Merged-chr15-25144410-2	chr15	25144305	25144505	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269359.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.42	5.28	5.13	7.24	5.32	10.98	3.32	5.41	9.05	6.53	8.54	6.58
Merged-chr11-49847518-2	chr11	49847400	49847600	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	749.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.65	4.78	2.85	5.23	7.36	11.6	3.99	6.64	7.47	10.54	12.06	15.35
Merged-chr6-30303376-2	chr6	30303261	30303461	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	1178.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	4.04	6.79	2.28	8.45	4.09	8.78	4.98	8.07	6.1	6.53	5.02	5.95
Merged-chr4-10973858-2	chr4	10973762	10973962	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	33757.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	1.21	1.01	0.0	2.82	9.0	8.47	5.31	6.08	14.16	4.02	11.05	6.27
Merged-chr17-10822724-2	chr17	10822633	10822833	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	17458.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.44	10.31	6.28	8.04	8.59	1.88	3.65	5.19	5.7	3.01	10.05	4.7
Merged-chr19-46509356-2	chr19	46509245	46509445	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	7697.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.62	8.8	5.13	8.04	7.36	6.27	5.98	5.55	7.87	6.03	8.54	4.07
Merged-chr6-73709812-3	chr6	73709722	73709922	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-238801.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.44	8.55	2.28	8.04	6.95	12.54	9.3	22.04	10.42	12.05	15.07	5.64
Merged-chr11-116869419-1	chr11	116869319	116869519	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15419.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	2.02	9.31	1.71	0.8	5.73	10.03	2.33	5.19	6.1	7.03	5.53	6.89
Merged-chr4-120851158-2	chr4	120851050	120851250	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3649.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	8.48	9.56	3.42	3.22	6.95	5.96	6.64	4.46	4.52	5.02	3.01	7.83
Merged-chrX-85293686-1	chrX	85293586	85293786	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44009.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	2.83	2.01	2.28	4.02	4.91	4.7	5.65	6.81	1.57	0.0	0.0	1.57
Merged-chr6-17066116-2	chr6	17065999	17066199	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	950.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	7.27	6.54	9.7	8.04	11.45	12.23	2.66	8.52	9.05	6.03	5.53	2.82
Merged-chr12-17724706-1	chr12	17724606	17724806	+	668.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	33897.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.21	1.01	2.85	0.0	4.5	4.39	0.0	2.16	7.67	5.02	12.06	4.39
Merged-chr18-24407478-1	chr18	24407378	24407578	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21692.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	1.01	6.85	0.0	8.18	8.15	1.66	5.64	4.33	0.5	2.01	3.45
Merged-chr4-111045686-2	chr4	111045590	111045790	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-369316.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	2.83	7.8	12.55	7.24	6.14	8.47	1.99	7.23	0.98	1.0	2.01	0.0
Merged-chr7-100894772-1	chr7	100894672	100894872	+	668.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 1 of 20)	CpG	-12363.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	5.25	5.03	7.42	3.22	4.91	1.25	1.33	2.19	9.83	13.05	3.52	5.64
Merged-chr11-80932546-1	chr11	80932446	80932646	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034013, intron 3 of 9)	intron (NM_001034013, intron 3 of 9)	74157.0	NM_029367	75622.0	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	8.08	3.02	4.56	7.24	11.86	4.7	4.65	6.36	6.69	5.52	12.56	5.33
Merged-chr11-70792638-3	chr11	70792530	70792730	+	668.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	19931.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	8.88	8.55	11.41	2.82	11.45	5.33	3.32	3.93	18.49	24.1	10.55	12.22
Merged-chr9-58204256-3	chr9	58204132	58204332	+	668.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	87.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	7.27	8.55	2.85	8.04	8.59	8.47	5.65	6.59	7.67	9.54	6.03	4.7
Merged-chr2-73395680-2	chr2	73395574	73395774	+	668.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-9194.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	7.67	3.02	3.99	3.62	11.45	7.53	2.99	5.27	8.85	2.51	11.05	11.28
Merged-chr8-34216111-2	chr8	34215994	34216194	+	668.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49382.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	8.08	4.02	2.85	1.21	4.5	2.51	7.31	2.38	7.08	7.53	5.53	11.9
Merged-chr2-118573501-1	chr2	118573401	118573601	+	668.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-23815.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.46	3.77	6.28	2.41	7.77	11.92	2.33	4.18	1.77	1.51	4.52	3.76
Merged-chr9-54501202-1	chr9	54501102	54501302	+	668.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172771, intron 1 of 43)	CpG	424.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	9.29	6.29	9.7	9.25	8.59	10.66	6.31	9.48	16.13	5.02	11.05	8.46
Merged-chr5-21395362-1	chr5	21395262	21395462	+	668.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	22689.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.04	5.03	12.55	8.45	7.36	5.02	5.65	8.64	4.33	7.03	7.03	5.95
Merged-chr5-31956548-1	chr5	31956448	31956648	+	668.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	L2a|LINE|L2	-179924.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.04	2.26	7.99	3.62	8.18	7.84	2.33	7.32	3.74	3.51	2.01	6.27
Merged-chr5-90977455-3	chr5	90977369	90977569	+	668.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	46273.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	4.85	7.29	5.7	10.46	8.18	16.31	6.98	13.07	10.62	3.51	14.07	2.82
Merged-chr9-59565772-3	chr9	59565689	59565889	+	668.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010421)	TTS (NM_010421)	-12548.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	10.5	6.79	6.85	6.44	6.55	4.08	9.3	10.32	7.08	8.54	11.56	6.89
Merged-chr11-115643532-2	chr11	115643442	115643642	+	668.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008163)	TTS (NM_008163)	-15247.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.25	0.5	9.7	0.8	6.14	10.35	8.3	5.1	11.8	18.58	11.56	7.83
Merged-chr8-13339112-2	chr8	13339037	13339237	+	668.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358991, intron 1 of 12)	CpG	333.0	NM_009361	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	6.46	4.53	2.85	2.41	7.77	12.54	5.98	6.25	9.44	14.06	8.54	8.14
Merged-chr8-122501050-2	chr8	122500943	122501143	+	668.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037298, intron 10 of 50)	intron (NM_001037298, intron 10 of 50)	24900.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	6.86	2.52	9.7	4.83	9.41	10.35	5.31	4.63	9.64	13.05	6.03	7.52
Merged-chr4-122859271-2	chr4	122859162	122859362	+	668.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008917)	TTS (NM_008917)	23035.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	2.83	2.52	5.7	0.0	7.36	3.14	7.97	7.99	11.01	9.04	4.52	5.64
Merged-chr17-6314210-1	chr17	6314110	6314310	+	668.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166629, intron 2 of 4)	B2_Mm1t|SINE|B2	3264.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	5.65	2.26	1.14	4.83	0.0	2.51	0.66	0.59	12.39	15.06	10.55	6.89
Merged-chr11-117116955-3	chr11	117116827	117117027	+	668.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1755.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.23	2.01	4.56	8.04	6.95	5.33	3.99	8.36	8.85	5.52	8.04	5.33
Merged-chr1-171619860-3	chr1	171619769	171619969	+	668.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12459.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	8.88	6.04	7.42	4.83	2.86	5.64	1.66	12.14	13.57	16.57	11.56	5.95
Merged-chr6-87400116-2	chr6	87400017	87400217	+	668.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11182.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	10.9	8.3	5.7	8.04	7.36	6.27	4.98	5.8	0.98	5.52	4.02	7.21
Merged-chr3-19300333-2	chr3	19300257	19300457	+	668.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	10965.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	12.52	8.3	0.57	8.85	10.23	6.9	2.66	6.25	5.11	6.03	8.04	9.4
Merged-chr19-5956851-3	chr19	5956755	5956955	+	668.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 4 of 17)	intron (NM_001164057, intron 4 of 17)	7351.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	7.67	6.04	6.85	3.22	10.64	12.86	4.32	6.95	8.65	6.03	7.03	8.46
Merged-chr9-44479079-3	chr9	44478892	44479092	+	668.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3833.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	7.27	4.02	2.85	1.21	12.27	2.2	4.98	4.88	4.33	9.04	18.09	5.64
Merged-chr10-19107697-1	chr10	19107597	19107797	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-34052.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	7.27	8.05	1.14	12.87	9.41	17.87	6.64	6.03	19.08	7.03	5.53	7.52
Merged-chr3-134339292-1	chr3	134339192	134339392	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84343.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	2.83	3.02	0.57	4.02	1.23	2.2	4.98	6.64	3.54	2.51	3.01	1.88
Merged-chr1-156461181-1	chr1	156461081	156461281	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	13147.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.42	2.26	8.56	6.44	8.18	5.96	2.99	13.68	0.0	0.0	0.0	0.0
Merged-chr11-37046867-1	chr11	37046767	37046967	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-102626.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.81	2.52	0.57	3.22	1.64	2.51	5.65	6.03	4.92	3.01	4.02	1.88
Merged-chr15-5456799-1	chr15	5456699	5456899	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-39519.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	3.23	1.01	0.0	0.8	8.18	2.51	1.99	5.02	4.33	4.02	5.02	8.46
Merged-chr9-40466820-1	chr9	40466720	40466920	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	T-rich|Low_complexity|Low_complexity	-11056.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.02	7.8	6.85	3.62	3.27	5.33	3.99	5.58	1.57	0.0	0.0	2.82
Merged-chr2-147177799-1	chr2	147177699	147177899	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001077632, exon 3 of 3)	exon (NM_001077632, exon 3 of 3)	-6284.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	3.23	1.26	3.99	5.23	6.14	1.25	4.32	6.08	2.36	3.01	7.54	3.13
Merged-chr4-150869943-1	chr4	150869843	150870043	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	14873.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	1.62	7.55	2.85	5.63	8.18	6.59	6.64	8.36	2.95	4.52	7.03	1.88
Merged-chr10-67535536-3	chr10	67535415	67535615	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2354.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	5.25	6.54	3.42	6.44	8.59	5.33	6.31	7.54	9.05	4.52	5.53	8.77
Merged-chr15-91253194-2	chr15	91253092	91253292	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-61185.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	9.69	5.28	4.56	4.02	0.82	2.51	5.31	5.55	8.85	13.56	7.03	1.88
Merged-chrX-77834625-1	chrX	77834525	77834725	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2A|LINE|L1	18875.0	NM_017471	54192.0	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	1.62	6.29	2.28	3.22	8.18	5.33	8.64	6.39	4.72	3.01	6.03	0.63
Merged-chr8-84436112-1	chr8	84436012	84436212	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	20748.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	0.0	1.71	0.8	6.14	10.98	8.3	9.95	0.2	0.0	0.5	0.63
Merged-chr10-128284222-1	chr10	128284122	128284322	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019963, intron 19 of 23)	intron (NM_019963, intron 19 of 23)	13724.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	6.06	2.26	2.28	2.01	2.86	5.96	1.99	5.94	5.9	11.55	4.02	5.64
Merged-chr13-99344032-2	chr13	99343911	99344111	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	667.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.65	3.02	4.56	4.83	9.0	7.53	6.98	11.02	6.88	6.53	10.55	8.14
Merged-chr14-70403197-1	chr14	70403097	70403297	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	25897.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	2.42	2.01	7.99	2.82	6.55	2.51	1.0	5.69	4.92	5.02	5.02	7.83
Merged-chr3-67062858-1	chr3	67062758	67062958	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356280, intron 3 of 7)	intron (NM_001356280, intron 3 of 7)	76891.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.81	2.52	1.71	4.02	5.73	1.57	2.33	2.41	7.67	1.0	12.06	2.82
Merged-chr14-118662836-1	chr14	118662736	118662936	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	MTE2b|LTR|ERVL-MaLR	14095.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	5.25	8.55	10.84	9.65	6.14	9.72	8.97	9.48	11.01	12.55	16.58	8.14
Merged-chr16-97998238-1	chr16	97998138	97998338	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001362093, intron 1 of 3)	intron (NM_001362093, intron 1 of 3)	891.0	NR_130962	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	14.54	8.55	11.41	5.63	4.5	2.51	7.97	4.26	6.29	8.03	5.53	7.83
Merged-chr7-26248236-1	chr7	26248136	26248336	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18595.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	1.21	2.52	2.85	11.26	6.14	3.14	4.98	4.01	5.31	4.52	1.51	4.39
Merged-chrX-102066293-1	chrX	102066193	102066393	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001278534)	TTS (NM_001278534)	5014.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	1.62	3.77	5.7	6.03	2.86	7.53	5.65	7.93	3.34	5.52	2.01	1.25
Merged-chr13-62854865-1	chr13	62854765	62854965	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007994, intron 2 of 6)	intron (NM_007994, intron 2 of 6)	3505.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	2.83	0.5	4.56	3.22	3.27	1.88	1.66	4.57	4.72	4.02	7.54	2.51
Merged-chr16-30689809-1	chr16	30689709	30689909	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	90086.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.04	1.51	2.85	3.22	4.09	4.39	1.66	1.57	10.03	13.05	13.06	5.33
Merged-chr6-5290998-2	chr6	5290896	5291096	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	7377.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	5.65	12.83	9.13	2.82	3.68	9.41	2.33	5.44	5.51	6.53	5.02	5.01
Merged-chr9-90260317-1	chr9	90260217	90260417	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	10452.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.06	0.75	2.28	1.61	5.32	5.96	3.65	8.21	5.7	1.51	6.03	3.45
Merged-chr4-151995465-1	chr4	151995365	151995565	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172705, intron 1 of 3)	CpG	714.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	5.65	4.53	3.99	2.41	5.32	1.88	7.97	3.34	9.05	11.05	2.01	3.13
Merged-chr10-115372363-1	chr10	115372263	115372463	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025780, exon 3 of 3)	3' UTR (NM_025780, exon 3 of 3)	-9862.0	NM_001359472	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	5.25	5.53	6.85	6.03	1.64	1.25	0.66	2.97	3.34	11.05	16.08	3.13
Merged-chr3-97879454-2	chr3	97879381	97879581	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	9226.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.04	7.04	4.56	2.41	8.18	5.02	2.33	9.22	7.28	14.06	14.07	6.27
Merged-chr5-147866312-3	chr5	147866211	147866411	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025624, intron 2 of 5)	ORR1A2-int|LTR|ERVL-MaLR	5683.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	6.06	12.83	15.97	9.65	6.95	5.02	4.98	5.58	7.67	5.02	11.56	10.65
Merged-chr1-21856555-1	chr1	21856455	21856655	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	105387.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	5.25	5.28	5.7	6.84	2.05	3.76	5.98	6.11	0.2	0.0	1.0	0.63
Merged-chr2-153562487-1	chr2	153562387	153562587	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32516.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	1.62	0.5	2.85	1.61	8.18	4.7	5.31	5.72	6.1	3.51	9.55	10.34
Merged-chr4-126252808-1	chr4	126252708	126252908	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	3511.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	3.63	5.28	3.99	0.0	1.64	4.39	2.33	2.58	6.49	6.03	7.54	5.33
Merged-chr6-51567827-2	chr6	51567729	51567929	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22536.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.81	4.02	2.85	5.63	10.64	15.37	6.64	3.93	9.05	8.03	2.01	0.31
Merged-chr18-65305021-2	chr18	65304968	65305168	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037294, exon 5 of 13)	exon (NM_001037294, exon 5 of 13)	56207.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	4.85	5.28	3.42	0.8	3.27	4.39	0.66	2.83	3.54	0.5	0.0	2.51
Merged-chr2-102161424-1	chr2	102161324	102161524	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	25036.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	1.26	0.0	0.0	7.36	5.96	2.99	8.86	5.11	0.5	8.04	4.7
Merged-chr4-72478073-1	chr4	72477973	72478173	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	276829.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	4.85	1.76	1.14	1.61	3.27	5.02	6.31	6.73	8.85	4.52	11.56	8.77
Merged-chr14-33246098-1	chr14	33245998	33246198	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	RLTR16|LTR|ERVK	29275.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.06	1.01	0.0	1.61	1.23	6.9	1.99	4.82	1.18	1.0	2.51	1.25
Merged-chr10-121472619-1	chr10	121472519	121472719	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	ID_B1|SINE|B4	3631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.02	3.52	1.71	1.61	6.95	1.88	6.64	4.96	1.77	1.0	3.52	0.94
Merged-chr18-46493322-3	chr18	46493217	46493417	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27501.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.62	6.04	11.41	8.85	9.41	12.54	9.63	12.64	9.24	9.54	17.08	5.33
Merged-chr3-89387812-1	chr3	89387712	89387912	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-141.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	10.5	3.52	6.28	4.83	6.14	2.2	3.32	3.7	5.51	5.02	9.55	3.13
Merged-chr9-108561055-1	chr9	108560955	108561155	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001114119)	TTS (NM_001114119)	554.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	8.88	10.56	1.71	3.22	4.09	9.09	6.64	2.92	12.19	7.53	9.04	6.58
Merged-chr19-55825667-2	chr19	55825584	55825784	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-69637.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.67	6.04	8.56	9.25	12.68	4.39	5.65	8.19	0.59	6.03	3.01	1.88
Merged-chr11-53470085-2	chr11	53469995	53470195	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10100.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	10.09	5.28	6.85	10.05	8.18	6.59	1.33	7.18	15.14	5.02	7.03	4.39
Merged-chr6-5044584-1	chr6	5044484	5044684	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	141264.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.04	3.77	3.42	6.03	3.27	5.33	2.99	1.96	11.8	3.01	10.05	3.76
Merged-chr5-99239623-1	chr5	99239523	99239723	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13304.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.44	4.78	4.56	4.83	9.0	10.98	3.32	1.82	9.24	2.01	6.53	4.39
Merged-chr2-143838837-1	chr2	143838737	143838937	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	24336.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	6.06	4.28	3.42	4.02	2.45	7.53	7.97	4.15	6.69	7.53	10.55	1.88
Merged-chr5-5381257-1	chr5	5381157	5381357	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1006.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.65	4.28	5.13	4.42	6.95	2.2	2.66	8.78	6.29	6.53	4.52	5.01
Merged-chr3-109169336-3	chr3	109169237	109169437	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172685)	TTS (NM_172685)	46188.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	9.29	7.04	0.57	7.64	4.91	7.21	5.31	8.86	8.85	9.04	5.02	6.27
Merged-chr15-59865319-1	chr15	59865219	59865419	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70360.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	8.08	3.02	13.12	6.44	11.05	7.53	2.66	4.88	5.7	14.06	7.54	10.02
Merged-chr3-27186323-1	chr3	27186223	27186423	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	3319.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.63	1.51	0.0	5.63	2.45	1.57	6.64	6.79	3.54	2.01	3.01	3.13
Merged-chr14-75899674-1	chr14	75899574	75899774	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026816, intron 7 of 7)	intron (NM_026816, intron 7 of 7)	51751.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	1.62	5.79	2.28	1.61	0.82	2.51	6.98	6.25	4.92	5.52	7.03	3.13
Merged-chr12-116425601-1	chr12	116425501	116425701	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133762, intron 11 of 28)	RSINE1|SINE|B4	20199.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.65	1.26	3.99	8.85	4.91	4.08	5.65	5.92	0.39	0.5	0.0	1.25
Merged-chr11-101170506-1	chr11	101170406	101170606	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146030, intron 1 of 12)	CpG	796.0	NM_146030	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	6.86	7.55	4.56	0.8	3.27	6.59	2.66	3.9	5.11	5.02	10.05	6.58
Merged-chr1-189806735-1	chr1	189806635	189806835	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 3 of 18)	ORR1E|LTR|ERVL-MaLR	78467.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.4	0.5	0.0	0.4	0.41	0.0	0.0	0.64	8.65	6.53	12.56	8.77
Merged-chr2-63504102-1	chr2	63504002	63504202	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71186.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	3.23	5.03	12.55	8.85	7.36	6.27	4.98	10.77	12.0	6.53	8.04	1.88
Merged-chr18-38944650-1	chr18	38944550	38944750	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25951.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	4.44	6.04	6.28	4.83	4.5	3.45	7.97	6.31	5.51	4.52	7.54	3.13
Merged-chr1-36275806-1	chr1	36275706	36275906	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2381.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	9.29	8.55	15.97	6.44	3.27	0.63	3.32	2.66	3.54	2.01	5.02	1.25
Merged-chr6-83635365-1	chr6	83635265	83635465	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	20751.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.83	2.52	1.14	1.61	2.86	0.31	2.99	6.36	0.79	4.52	0.5	2.51
Merged-chr16-19733124-1	chr16	19733024	19733224	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26759.0	NM_177356	239739.0	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	4.04	4.02	7.99	4.02	8.18	4.39	3.65	6.45	6.69	3.51	12.06	5.95
Merged-chr2-26657475-1	chr2	26657375	26657575	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13807.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	8.08	4.53	3.42	9.65	7.36	3.14	6.64	9.2	6.69	5.52	6.53	3.45
Merged-chr4-130827527-1	chr4	130827427	130827627	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34990.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	1.21	1.51	1.71	0.0	0.41	0.31	5.98	5.27	1.38	2.01	7.54	5.01
Merged-chr16-87675868-1	chr16	87675768	87675968	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23086.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.42	3.02	0.57	0.4	3.27	1.57	5.98	7.18	1.97	2.51	3.01	0.0
Merged-chr6-115362161-2	chr6	115362037	115362237	+	667.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	-212.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.86	7.55	4.56	6.84	4.09	2.51	8.64	5.24	3.93	7.53	9.04	7.83
Merged-chr6-72599346-3	chr6	72599249	72599449	+	667.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144917)	promoter-TSS (NM_144917)	721.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	5.65	6.04	3.42	6.03	8.18	6.59	9.97	9.59	9.24	11.05	16.08	5.95
Merged-chr3-144381164-3	chr3	144381060	144381260	+	667.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175905.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	2.83	6.04	6.85	10.86	5.32	5.96	8.64	13.68	3.34	5.02	11.05	11.59
Merged-chr17-78245711-3	chr17	78245624	78245824	+	667.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	45476.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	8.48	7.55	7.99	1.61	9.0	10.35	0.33	4.68	12.19	3.01	3.01	5.64
Merged-chr16-3231784-2	chr16	3231698	3231898	+	667.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-360600.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	8.88	10.31	7.99	11.66	2.05	2.51	4.98	7.57	6.49	4.52	6.53	8.14
Merged-chr4-33310989-2	chr4	33310860	33311060	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 1 of 15)	intron (NM_001305273, intron 1 of 15)	649.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.81	2.52	9.13	0.8	6.95	1.57	9.97	2.21	6.49	8.54	4.02	7.52
Merged-chr19-46392284-2	chr19	46392181	46392381	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016860, intron 1 of 10)	B3|SINE|B2	3454.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	6.46	9.06	6.28	5.63	6.55	3.76	8.64	4.93	11.8	10.04	14.07	5.33
Merged-chr11-114523477-2	chr11	114523397	114523597	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74637.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	0.0	0.0	1.14	0.8	1.64	2.82	4.65	5.05	9.24	12.05	11.05	11.59
Merged-chr1-186676228-2	chr1	186676081	186676281	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	29808.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	4.04	4.53	7.99	6.03	7.36	2.2	7.64	2.19	4.92	1.51	5.53	5.95
Merged-chr8-35596670-3	chr8	35596598	35596798	+	667.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-7678.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.25	6.04	9.13	7.24	6.55	6.9	5.98	7.77	12.0	4.02	9.04	3.76
Merged-chr6-117166970-3	chr6	117166878	117167078	+	667.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1557.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	3.23	5.79	4.56	8.04	4.5	13.17	3.65	10.57	11.41	9.04	13.57	8.77
Merged-chr8-70376503-3	chr8	70376342	70376542	+	667.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016685, exon 8 of 19)	exon (NM_016685, exon 8 of 19)	2894.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	1.21	3.77	1.71	0.8	8.59	2.51	7.97	3.59	3.54	4.52	0.0	6.58
Merged-chr10-80948785-3	chr10	80948683	80948883	+	667.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010319, exon 4 of 4)	3' UTR (NM_010319, exon 4 of 4)	18692.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	9.29	7.8	6.85	5.23	6.55	13.17	3.65	5.58	8.26	3.01	10.55	5.64
Merged-chr3-86976698-3	chr3	86976580	86976780	+	667.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9906.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	5.65	7.29	10.27	8.85	6.95	5.33	13.95	14.58	7.47	6.03	6.53	4.7
Merged-chr7-25789529-3	chr7	25789417	25789617	+	667.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-784.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	6.86	7.55	1.14	0.8	8.18	13.8	2.99	6.62	9.05	9.54	9.55	8.46
Merged-chr10-81525162-1	chr10	81525062	81525262	+	667.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-937.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	1.62	6.29	1.71	8.45	6.95	3.76	4.65	4.09	3.93	6.03	6.03	5.95
Merged-chr16-8459375-1	chr16	8459275	8459475	+	667.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11438.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	6.86	1.51	4.56	2.41	7.36	7.53	4.65	5.05	3.54	6.03	4.02	5.33
Merged-chr1-60042927-2	chr1	60042812	60043012	+	667.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027407, exon 1 of 11)	5' UTR (NM_027407, exon 1 of 11)	210.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	6.46	10.31	4.56	5.63	8.18	5.64	2.66	7.29	7.47	8.03	11.56	5.95
Merged-chr7-110679979-2	chr7	110679876	110680076	+	667.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	52319.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	8.48	5.79	5.7	6.44	6.14	5.96	1.33	4.09	13.18	12.55	8.54	15.04
Merged-chr2-169929942-2	chr2	169929789	169929989	+	667.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33298.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	6.46	4.28	3.99	0.0	11.45	6.27	0.33	4.12	9.24	10.54	6.03	6.27
Merged-chr17-70751373-2	chr17	70751327	70751527	+	667.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	95350.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.63	5.28	5.13	8.04	4.91	9.09	4.32	7.32	5.9	12.05	3.52	8.14
Merged-chr8-84069986-3	chr8	84069887	84070087	+	667.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3151.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	9.69	2.01	18.25	14.88	14.32	8.15	8.64	7.79	5.31	7.53	10.05	7.83
Merged-chr2-120037981-2	chr2	120037885	120038085	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145378, intron 11 of 19)	intron (NM_145378, intron 11 of 19)	4552.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	4.04	4.28	4.56	5.63	1.64	9.41	1.66	5.72	7.47	3.01	12.56	7.52
Merged-chr17-34310005-2	chr17	34309922	34310122	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	B3A|SINE|B2	4155.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.42	9.31	5.13	3.62	3.68	3.45	1.33	1.15	11.01	8.03	7.03	6.89
Merged-chr3-65586085-2	chr3	65585974	65586174	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56660.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.85	3.27	10.84	8.85	1.64	1.88	5.65	7.15	5.51	2.51	17.59	4.7
Merged-chr1-66838607-1	chr1	66838507	66838707	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007381, intron 8 of 10)	intron (NM_007381, intron 8 of 10)	-21012.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	9.69	5.03	3.42	1.21	2.05	7.53	5.31	4.15	8.26	2.01	1.51	4.39
Merged-chr4-16160634-1	chr4	16160534	16160734	+	667.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3009.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.06	4.78	0.0	0.0	8.59	6.27	1.99	0.56	12.98	20.08	13.06	6.58
Merged-chr15-99099288-2	chr15	99099200	99099400	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176835)	promoter-TSS (NM_176835)	-184.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	11.31	3.52	2.85	2.41	14.32	9.41	5.65	7.79	8.26	2.51	7.03	3.45
Merged-chr1-177521314-2	chr1	177521207	177521407	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75486.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.85	6.04	12.55	16.09	8.59	3.14	5.65	9.36	11.6	4.02	5.53	5.33
Merged-chr15-54953704-1	chr15	54953604	54953804	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_155354, exon 2 of 3)	non-coding (NR_155354, exon 2 of 3)	756.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	10.09	1.76	13.69	9.65	2.86	2.2	0.66	1.68	3.34	0.0	3.01	1.88
Merged-chr2-180920083-3	chr2	180919963	180920163	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173761, intron 2 of 4)	intron (NM_173761, intron 2 of 4)	873.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	7.27	5.28	13.69	3.22	8.59	5.96	9.63	9.62	11.21	11.55	9.04	6.58
Merged-chr18-17623146-1	chr18	17623046	17623246	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42156.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	2.02	0.75	0.0	5.63	8.59	4.39	3.65	6.22	0.39	4.52	3.01	0.94
Merged-chr11-54439607-1	chr11	54439507	54439707	+	667.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1428.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	4.04	5.03	0.0	6.84	2.86	3.76	8.64	2.78	5.51	4.52	10.05	6.27
Merged-chr5-99328526-1	chr5	99328426	99328626	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	-75599.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.44	2.26	2.85	0.8	0.41	5.02	7.64	6.5	5.9	7.03	8.54	3.13
Merged-chr9-37029967-2	chr9	37029873	37030073	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	117349.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	6.46	6.54	10.27	8.85	5.32	10.03	5.98	8.83	0.39	1.0	1.0	3.13
Merged-chrX-101642344-1	chrX	101642244	101642444	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290535, intron 1 of 21)	intron (NM_001290535, intron 1 of 21)	2126.0	NM_001290535	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	3.63	4.53	3.42	2.01	9.0	8.15	4.32	6.56	3.74	8.03	3.52	5.33
Merged-chr6-99094746-1	chr6	99094646	99094846	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-66448.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.83	6.79	3.42	4.02	3.27	3.76	9.3	5.24	4.72	1.0	2.51	3.76
Merged-chr14-63164914-2	chr14	63164819	63165019	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360211, intron 1 of 7)	intron (NM_001360211, intron 1 of 7)	12968.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	7.67	1.76	0.57	11.26	7.36	8.47	0.33	7.12	7.28	7.03	9.55	3.45
Merged-chr4-139178618-2	chr4	139178523	139178723	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033543, exon 2 of 3)	non-coding (NR_033543, exon 2 of 3)	2032.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	8.88	11.07	8.56	11.66	1.64	1.25	0.0	2.27	7.87	5.52	9.04	10.02
Merged-chr2-154402157-2	chr2	154402052	154402252	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009228, intron 2 of 7)	B3|SINE|B2	5932.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	9.69	6.54	4.56	10.86	8.59	3.76	2.33	8.72	5.51	6.53	6.53	6.27
Merged-chr6-115762129-2	chr6	115762047	115762247	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168256, intron 1 of 11)	CT-rich|Low_complexity|Low_complexity	319.0	NM_001168257	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	4.04	5.53	2.28	6.44	11.05	3.14	4.98	5.38	7.67	9.54	7.54	4.7
Merged-chr11-58030099-1	chr11	58029999	58030199	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	21035.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.86	3.27	7.99	8.85	2.86	12.23	4.98	3.81	3.34	7.03	7.03	1.88
Merged-chr7-31172464-3	chr7	31172349	31172549	+	667.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	10091.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	6.86	7.8	5.13	8.85	13.5	10.98	7.97	6.48	8.26	13.56	12.56	6.89
Merged-chr6-141075432-3	chr6	141075328	141075528	+	667.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-173841.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	3.23	2.26	13.69	8.85	14.73	9.41	13.29	6.0	8.46	8.54	8.04	8.14
Merged-chr13-62859419-3	chr13	62859329	62859529	+	667.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-1059.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	17.77	6.54	15.97	10.86	8.18	12.23	7.97	4.68	9.24	17.57	13.57	7.21
Merged-chr10-18431053-2	chr10	18430943	18431143	+	667.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	23368.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	2.83	6.79	7.42	9.65	6.55	5.96	11.63	4.01	4.13	3.01	3.01	1.25
Merged-chr2-9889637-2	chr2	9889489	9889689	+	667.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040511)	promoter-TSS (NR_040511)	-49.0	NR_040511	77682.0	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	8.48	4.53	2.28	8.04	8.18	2.51	1.66	4.15	13.96	1.51	6.53	2.82
Merged-chr14-73117128-2	chr14	73117038	73117238	+	667.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25372.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.23	3.27	6.28	8.85	8.18	6.27	4.98	7.54	9.64	2.01	5.02	6.89
Merged-chr8-8198606-1	chr8	8198506	8198706	+	667.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	462167.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.25	4.28	3.42	8.04	4.91	7.84	4.32	10.4	6.49	4.02	12.06	8.14
Merged-chr10-116949895-3	chr10	116949784	116949984	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	569.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	12.92	9.81	1.71	2.01	5.32	6.9	3.32	5.89	9.64	8.03	8.04	10.34
Merged-chr2-59688897-1	chr2	59688797	59688997	+	667.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	42128.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	2.02	5.03	9.7	0.4	1.64	2.51	3.99	4.37	2.36	3.51	2.51	4.39
Merged-chr12-99393684-1	chr12	99393584	99393784	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	56390.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	7.67	6.79	6.28	12.07	7.77	4.08	4.65	3.53	6.29	6.03	9.55	12.22
Merged-chr11-51821016-3	chr11	51820918	51821118	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	36463.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	7.27	12.07	7.99	3.22	8.59	7.53	4.65	7.23	10.42	7.53	5.02	3.76
Merged-chr17-47792671-3	chr17	47792581	47792781	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161723)	TTS (NM_001161723)	6937.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	8.48	2.52	10.84	4.02	7.77	3.76	2.33	3.81	7.47	6.03	7.54	10.96
Merged-chr14-64882836-3	chr14	64882742	64882942	+	667.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	67015.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	9.69	6.54	9.13	8.85	5.73	6.9	1.66	9.98	6.88	8.54	14.57	6.89
Merged-chr19-60757937-2	chr19	60757842	60758042	+	667.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178421, exon 1 of 1)	3' UTR (NM_178421, exon 1 of 1)	1955.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	12.11	4.02	7.99	4.42	6.55	2.51	7.31	16.07	7.67	4.02	3.52	14.1
Merged-chr13-112661291-2	chr13	112661149	112661349	+	667.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	483.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.65	7.29	1.14	5.23	4.5	4.08	6.64	5.36	6.29	5.02	7.03	13.47
Merged-chr4-136224952-2	chr4	136224859	136225059	+	667.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	18594.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	3.23	4.02	9.7	12.07	8.18	9.09	4.65	7.09	9.44	10.04	1.51	2.82
Merged-chr4-117139404-3	chr4	117139323	117139523	+	667.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5460.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	6.86	5.28	2.28	0.8	15.14	9.09	8.64	5.38	9.64	14.56	8.54	5.33
Merged-chr10-61151625-2	chr10	61151528	61151728	+	667.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3944.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	10.5	7.55	10.27	8.04	9.82	8.78	6.98	6.67	13.37	5.52	9.04	5.01
Merged-chr7-16149434-2	chr7	16149339	16149539	+	667.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	19613.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	10.09	5.53	9.13	7.64	8.18	8.78	3.32	9.28	4.33	15.06	7.03	12.84
Merged-chr16-12089844-3	chr16	12089752	12089952	+	667.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	105739.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	9.29	7.29	8.56	13.67	7.77	7.53	5.98	7.15	10.23	10.04	14.57	7.52
Merged-chr5-145185349-2	chr5	145185264	145185464	+	667.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020582, intron 2 of 3)	RLTR11B|LTR|ERVK	6228.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	1.62	4.78	14.26	2.82	4.09	1.88	5.98	3.98	12.19	12.05	9.55	12.22
Merged-chr11-3371470-3	chr11	3371426	3371626	+	667.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361623)	promoter-TSS (NM_001361623)	-122.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	7.27	7.8	9.7	6.44	7.77	13.17	6.64	12.31	8.26	4.52	6.53	6.27
Merged-chr11-49087072-3	chr11	49087014	49087214	+	667.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271676)	promoter-TSS (NM_001271676)	97.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	6.06	8.3	8.56	4.42	13.5	5.96	4.65	5.19	7.28	7.53	9.04	7.21
Merged-chr17-23645055-1	chr17	23644955	23645155	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001320258, exon 1 of 10)	5' UTR (NM_001320258, exon 1 of 10)	214.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	4.04	7.29	5.7	6.44	4.09	6.27	2.33	2.38	7.87	4.02	9.04	10.96
Merged-chr11-62554164-1	chr11	62554064	62554264	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_002875)	TTS (NR_002875)	2433.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	1.21	5.53	2.28	0.8	2.86	2.82	3.65	3.98	4.52	3.51	1.51	1.57
Merged-chr10-78441038-2	chr10	78440919	78441119	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172134, intron 10 of 10)	intron (NM_172134, intron 10 of 10)	4138.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	5.65	3.77	4.56	1.61	2.45	7.53	2.33	5.61	10.03	9.04	4.52	10.96
Merged-chr10-128891331-2	chr10	128891278	128891478	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010272, exon 1 of 3)	exon (NM_010272, exon 1 of 3)	340.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	4.04	7.04	9.7	4.83	6.55	5.64	8.3	3.64	7.08	4.52	9.55	3.76
Merged-chr6-5163849-1	chr6	5163749	5163949	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	30097.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.5	1.14	1.21	1.23	4.7	0.66	1.96	4.52	1.51	1.0	3.76
Merged-chr11-43223763-1	chr11	43223663	43223863	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176999, intron 14 of 22)	intron (NM_176999, intron 14 of 22)	73886.0	NM_176999	319767.0	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	6.86	3.52	2.28	11.26	14.32	5.33	7.97	3.67	6.1	5.52	16.08	7.52
Merged-chr14-57665913-1	chr14	57665813	57666013	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-957.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	3.23	4.78	2.28	2.82	4.91	6.9	0.66	1.93	5.51	1.0	12.56	2.51
Merged-chr3-116804680-1	chr3	116804580	116804780	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362367, intron 2 of 27)	intron (NM_001362367, intron 2 of 27)	3486.0	NM_001362367	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	1.21	2.52	1.14	0.8	3.68	0.0	1.33	0.08	6.1	13.05	12.56	10.34
Merged-chr17-43458822-1	chr17	43458722	43458922	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081178, exon 21 of 21)	3' UTR (NM_001081178, exon 21 of 21)	43951.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	1.62	1.01	1.71	0.8	7.77	7.21	1.33	4.23	12.0	5.52	8.54	3.76
Merged-chr12-3661419-3	chr12	3661257	3661457	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	88373.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	4.04	9.31	11.41	5.23	2.05	10.03	1.33	4.4	11.6	6.03	3.52	6.58
Merged-chr17-84156942-2	chr17	84156843	84157043	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	31004.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.04	7.55	8.56	8.04	5.73	6.59	2.66	10.07	5.7	8.03	7.54	6.27
Merged-chr2-90965888-1	chr2	90965788	90965988	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	25491.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	2.83	4.02	6.85	2.41	4.09	5.96	2.99	7.04	3.93	4.02	2.51	2.82
Merged-chr10-41910904-1	chr10	41910804	41911004	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	23465.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.04	3.52	7.99	3.62	6.14	5.02	1.33	7.32	4.33	3.51	10.05	6.27
Merged-chr6-117863121-1	chr6	117863021	117863221	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360938, exon 2 of 5)	5' UTR (NM_001360938, exon 2 of 5)	240.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	2.83	2.52	1.14	2.82	3.27	5.64	2.99	7.4	8.06	8.03	4.02	4.07
Merged-chr6-134266373-1	chr6	134266273	134266473	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007961, exon 8 of 8)	exon (NM_007961, exon 8 of 8)	-129956.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.81	1.76	0.0	0.8	2.05	2.2	4.98	0.9	2.75	0.0	0.5	1.57
Merged-chr4-43286994-1	chr4	43286894	43287094	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 2 of 28)	B1_Mus1|SINE|Alu	19835.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	10.5	4.02	5.7	5.23	7.77	1.25	2.33	6.08	4.13	0.5	11.56	1.88
Merged-chr13-12369303-1	chr13	12369203	12369403	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26072.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	4.85	1.51	2.28	2.41	2.05	4.39	2.33	8.97	3.34	3.01	3.52	0.63
Merged-chr12-3861568-2	chr12	3861469	3861669	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045884, exon 3 of 4)	non-coding (NR_045884, exon 3 of 4)	675.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	9.29	5.79	11.98	2.41	8.18	13.48	9.3	11.16	12.39	8.54	15.58	5.95
Merged-chr2-156542923-3	chr2	156542832	156543032	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-4644.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	5.25	6.29	9.13	6.03	7.36	6.59	4.98	6.81	13.96	4.02	6.53	7.21
Merged-chr4-156031839-1	chr4	156031739	156031939	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5517.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	1.62	2.77	10.27	0.8	2.86	1.57	2.33	3.14	9.83	10.04	16.58	9.4
Merged-chr1-93507136-2	chr1	93507048	93507248	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159719, intron 12 of 12)	intron (NM_001159719, intron 12 of 12)	-4956.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	10.5	3.77	11.98	3.22	6.55	5.64	4.98	9.56	6.49	8.03	2.01	2.19
Merged-chr11-115250430-1	chr11	115250330	115250530	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010350, exon 15 of 15)	exon (NM_010350, exon 15 of 15)	16813.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	2.02	3.77	1.14	2.01	0.41	5.02	2.66	3.84	2.75	3.01	4.02	1.57
Merged-chr13-70847165-1	chr13	70847065	70847265	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5354.0	NR_137640	271127.0	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.81	1.01	3.42	1.61	0.0	0.0	5.65	5.19	1.57	4.02	2.01	0.63
Merged-chr8-120598932-1	chr8	120598832	120599032	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9857.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	1.21	1.26	4.56	2.01	2.86	2.51	2.33	2.92	6.29	3.01	4.02	3.13
Merged-chr8-125850016-1	chr8	125849916	125850116	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-47898.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	4.44	0.5	3.42	1.61	4.09	3.76	5.98	5.97	1.97	3.51	1.0	1.57
Merged-chr15-11003206-1	chr15	11003106	11003306	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053077, intron 2 of 6)	intron (NM_053077, intron 2 of 6)	2485.0	NM_053077	22293.0	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	4.04	2.52	2.28	1.21	7.36	2.51	7.31	6.76	1.77	0.5	1.51	2.51
Merged-chr13-107856816-1	chr13	107856716	107856916	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33248.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	8.08	5.28	6.28	8.45	6.14	3.76	4.32	5.64	7.67	5.52	6.03	9.08
Merged-chr17-57279739-2	chr17	57279664	57279864	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	CT-rich|Low_complexity|Low_complexity	664.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	2.83	5.28	10.84	3.62	6.14	5.96	8.64	6.56	10.42	10.04	7.03	4.07
Merged-chr9-15493791-1	chr9	15493691	15493891	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359604, intron 1 of 2)	CpG	359.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	1.21	4.53	2.28	0.0	10.64	10.03	3.99	5.13	8.65	5.02	3.01	1.88
Merged-chr6-32780874-1	chr6	32780774	32780974	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-192682.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.81	1.51	1.14	0.0	1.23	0.31	0.66	0.45	5.31	14.06	17.08	4.39
Merged-chr7-82649237-1	chr7	82649137	82649337	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	623.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	7.27	9.31	2.28	1.61	9.41	10.98	1.99	5.1	6.69	15.06	7.03	2.51
Merged-chr13-113613117-2	chr13	113612998	113613198	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5466.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.08	6.29	3.42	6.84	9.82	8.47	3.32	2.33	7.08	10.54	12.56	2.51
Merged-chr12-101957629-1	chr12	101957529	101957729	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	614.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	8.48	4.28	3.99	3.62	1.64	9.72	3.32	3.67	8.46	10.54	7.54	1.25
Merged-chr5-90759493-1	chr5	90759393	90759593	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009141, exon 1 of 4)	exon (NM_009141, exon 1 of 4)	195.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	1.62	2.52	1.14	7.24	5.32	0.31	3.65	4.54	1.38	2.01	2.51	1.57
Merged-chr3-144232601-1	chr3	144232501	144232701	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27346.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.46	3.77	1.71	2.41	3.68	3.45	8.3	6.25	4.72	3.51	6.53	3.13
Merged-chr7-43883777-1	chr7	43883677	43883877	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019928, intron 3 of 5)	intron (NM_019928, intron 3 of 5)	2605.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	8.08	5.53	5.7	3.22	2.86	7.84	3.32	5.66	8.06	8.54	15.07	7.83
Merged-chr17-71254910-2	chr17	71254841	71255041	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 7 of 7)	AT_rich|Low_complexity|Low_complexity	50287.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.02	6.79	1.14	5.23	6.55	8.15	2.99	3.42	5.31	10.04	5.53	11.9
Merged-chr10-127123633-2	chr10	127123531	127123731	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-2471.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	6.86	5.03	5.7	2.41	3.27	7.53	2.33	8.13	7.87	10.04	9.55	8.14
Merged-chr9-119249388-1	chr9	119249288	119249488	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-17696.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	2.42	3.52	3.42	11.26	6.95	2.51	5.65	5.94	2.95	0.5	1.0	4.39
Merged-chr4-155216834-2	chr4	155216726	155216926	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	5709.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	1.21	5.03	4.56	1.21	3.27	8.78	5.98	5.69	9.05	6.03	7.03	10.65
Merged-chr1-39615597-1	chr1	39615497	39615697	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	35585.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	2.42	3.27	0.0	3.22	1.23	5.96	2.66	6.08	3.93	6.03	7.54	2.19
Merged-chr1-118477143-1	chr1	118477043	118477243	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 8 of 39)	B3|SINE|B2	-17878.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	4.85	3.77	3.42	3.22	4.09	1.25	5.31	4.88	6.88	4.52	5.53	1.25
Merged-chr1-155532942-1	chr1	155532842	155533042	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5831.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	4.04	7.04	13.12	3.62	4.5	1.88	4.65	4.96	7.67	6.53	5.53	4.39
Merged-chr7-80353990-1	chr7	80353890	80354090	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10853.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	4.44	1.76	12.55	7.24	4.09	2.51	7.64	5.78	0.0	2.01	3.52	7.52
Merged-chr17-67176052-1	chr17	67175952	67176152	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-149817.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	3.23	5.79	4.56	3.62	2.86	2.51	1.99	3.56	6.69	12.05	14.07	7.83
Merged-chr9-13311264-1	chr9	13311164	13311364	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64308.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	1.62	3.02	0.0	12.07	1.23	4.08	4.65	8.83	7.47	1.0	7.54	0.94
Merged-chr2-35257142-1	chr2	35257042	35257242	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	783.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	2.42	5.03	3.99	0.8	14.32	7.53	1.99	5.41	3.74	2.01	7.03	0.63
Merged-chr15-68319110-1	chr15	68319010	68319210	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18400.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	6.06	3.02	11.41	4.02	1.23	7.21	1.66	7.57	3.34	13.56	4.02	5.64
Merged-chr3-89282162-1	chr3	89282062	89282262	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1211.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	8.08	4.28	2.85	4.02	6.95	10.35	4.65	4.51	9.44	6.03	12.56	10.65
Merged-chr2-27704159-1	chr2	27704059	27704259	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-5133.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.63	2.01	0.0	4.83	6.14	3.14	4.98	6.25	3.74	2.51	2.01	2.51
Merged-chr15-81948769-2	chr15	81948684	81948884	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145473, intron 3 of 3)	intron (NM_145473, intron 3 of 3)	12025.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	2.02	5.28	0.0	8.85	2.45	7.53	4.32	5.69	7.87	4.52	8.04	8.46
Merged-chr11-98859292-3	chr11	98859186	98859386	+	666.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4312.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	9.69	12.07	4.56	7.24	10.23	13.17	4.32	4.93	16.72	13.05	17.08	6.58
Merged-chr9-98958005-3	chr9	98957904	98958104	+	666.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	2397.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	3.23	10.82	3.42	9.65	7.36	13.8	3.65	6.53	13.57	12.55	22.61	6.89
Merged-chr2-35336373-2	chr2	35336313	35336513	+	666.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	596.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	12.52	2.52	8.56	2.82	4.5	5.33	7.64	3.28	6.88	6.53	7.03	5.33
Merged-chr3-142598104-2	chr3	142597992	142598192	+	666.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	3245.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	1.62	4.78	2.28	3.62	4.09	2.51	6.64	4.54	11.6	10.04	15.07	11.28
Merged-chr4-88514627-3	chr4	88514532	88514732	+	666.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8162.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	3.63	9.81	11.41	9.25	10.23	7.84	5.65	7.09	7.67	8.03	16.08	4.07
Merged-chr11-120101217-3	chr11	120101118	120101318	+	666.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001110242)	TTS (NM_001110242)	2284.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	5.65	9.06	0.0	4.83	4.91	8.15	4.65	5.75	11.21	11.55	4.02	5.01
Merged-chr15-99457236-3	chr15	99457098	99457298	+	666.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001884, intron 1 of 12)	CpG	550.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	6.46	9.31	6.85	6.84	9.41	9.41	7.64	6.73	10.23	9.54	8.04	9.08
Merged-chr11-100938831-1	chr11	100938731	100938931	+	666.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	709.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	8.48	10.82	10.84	4.02	7.77	9.41	4.65	4.77	18.1	19.08	13.06	15.04
Merged-chr1-173411175-2	chr1	173411078	173411278	+	666.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9426.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.25	9.06	8.56	11.26	9.41	11.29	5.31	3.22	5.7	6.03	3.52	2.19
Merged-chr2-6726315-2	chr2	6726203	6726403	+	666.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-4641.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.02	4.78	7.99	4.02	7.36	5.96	2.99	7.74	6.88	7.03	12.56	8.46
Merged-chr16-55616762-2	chr16	55616660	55616860	+	666.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	122029.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	9.29	3.52	5.13	4.02	7.77	4.39	8.3	6.25	6.88	6.53	4.02	4.39
Merged-chr7-102193949-1	chr7	102193849	102194049	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287167, intron 4 of 19)	intron (NM_001287167, intron 4 of 19)	15918.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.81	7.8	5.7	3.62	11.05	11.92	4.98	5.69	6.69	2.01	5.02	5.64
Merged-chr5-32726357-1	chr5	32726257	32726457	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19985.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.44	5.79	2.85	5.63	6.55	11.92	13.62	4.74	0.79	0.5	0.0	0.94
Merged-chr18-62054195-1	chr18	62054095	62054295	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101120.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	2.83	2.77	8.56	2.82	6.55	5.96	5.31	5.8	0.39	1.51	1.0	1.88
Merged-chr6-125490102-1	chr6	125490002	125490202	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	4658.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	12.52	3.27	3.42	5.23	9.82	8.78	5.31	4.79	5.51	7.03	5.02	4.39
Merged-chr2-103865823-1	chr2	103865723	103865923	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35128.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	4.44	3.02	7.99	3.62	5.73	5.96	4.65	5.69	3.15	3.01	8.04	5.33
Merged-chr1-180066388-1	chr1	180066288	180066488	+	666.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_153194, intron 7 of 35)	intron (NR_153194, intron 7 of 35)	105299.0	NM_001033285	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	7.67	8.3	14.26	12.47	1.64	1.25	3.65	4.6	1.38	1.0	4.02	2.19
Merged-chr10-44371985-2	chr10	44371890	44372090	+	666.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	12314.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	3.63	5.53	10.27	4.02	6.95	7.84	3.65	4.65	8.85	13.05	18.09	3.45
Merged-chr17-5730046-1	chr17	5729946	5730146	+	666.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 7 of 8)	MTD|LTR|ERVL-MaLR	-68611.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.83	2.26	5.7	4.42	5.73	4.39	10.3	5.24	4.72	8.54	3.52	7.83
Merged-chr2-22758691-2	chr2	22758556	22758756	+	666.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	2.83	4.28	6.85	6.44	1.23	6.59	4.32	4.82	7.67	9.04	9.55	6.27
Merged-chr10-67002779-3	chr10	67002657	67002857	+	666.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2318.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.85	9.56	1.71	2.82	11.05	5.33	8.64	3.5	6.88	8.54	9.04	3.76
Merged-chr11-120823331-1	chr11	120823231	120823431	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007988, intron 1 of 42)	intron (NM_007988, intron 1 of 42)	1216.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	4.04	6.29	6.85	2.82	1.64	7.53	8.3	3.79	3.54	1.0	1.0	4.7
Merged-chrX-73574157-2	chrX	73574047	73574247	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177236)	TTS (NM_177236)	-65294.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	4.04	5.28	9.13	15.69	7.36	6.9	7.97	7.65	9.64	11.05	9.55	6.27
Merged-chr7-132305971-1	chr7	132305871	132306071	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-9693.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.81	1.26	4.56	1.21	6.95	1.88	4.98	7.07	5.31	3.01	3.01	3.45
Merged-chr2-118389780-2	chr2	118389678	118389878	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	666.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	6.46	5.79	11.41	8.45	0.0	5.64	0.0	2.41	13.96	14.56	10.55	7.21
Merged-chrX-77531234-2	chrX	77531136	77531336	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	20009.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	4.04	2.52	3.99	0.0	6.95	6.9	3.99	5.69	14.16	11.55	7.03	8.14
Merged-chr19-46588038-2	chr19	46587950	46588150	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053196, intron 5 of 11)	intron (NM_053196, intron 5 of 11)	-11056.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	8.88	2.52	4.56	3.22	6.55	4.08	1.33	7.15	12.0	6.53	10.55	12.84
Merged-chr2-152693425-2	chr2	152693328	152693528	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	6280.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	11.71	4.53	3.42	6.84	2.45	5.64	6.98	4.74	21.05	16.07	14.07	8.77
Merged-chr4-3776337-2	chr4	3776324	3776524	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	59231.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	7.27	0.25	4.56	4.42	0.82	2.82	4.65	2.69	4.33	5.02	10.55	1.88
Merged-chr16-49902953-2	chr16	49902867	49903067	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	Lx9|LINE|L1	47313.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.04	2.01	6.85	0.8	9.41	1.25	0.0	6.9	8.46	12.55	7.54	2.51
Merged-chr3-121243123-3	chr3	121243021	121243221	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178936, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	20038.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	4.44	5.28	11.98	7.24	6.14	9.09	3.65	9.11	5.51	3.51	13.57	9.08
Merged-chr3-89422726-3	chr3	89422615	89422815	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011368, intron 2 of 12)	intron (NM_011368, intron 2 of 12)	1094.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	7.67	7.55	4.56	10.46	13.91	9.09	5.98	6.14	9.83	11.05	6.53	1.88
Merged-chr8-84823850-2	chr8	84823758	84823958	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033145, intron 1 of 1)	intron (NR_033145, intron 1 of 1)	-1035.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	11.31	4.28	5.13	12.87	5.73	8.15	1.33	5.05	5.7	5.52	9.04	6.27
Merged-chr15-25764887-1	chr15	25764787	25764987	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	-9126.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.23	3.77	2.85	8.04	1.23	6.59	4.32	7.23	4.52	6.03	4.52	1.25
Merged-chr18-60775272-2	chr18	60775174	60775374	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	678.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	8.88	7.04	6.85	4.42	1.23	6.59	5.65	4.57	5.31	10.04	6.53	9.71
Merged-chr2-103146297-1	chr2	103146197	103146397	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	72622.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	16.56	5.03	7.99	2.41	7.36	5.33	3.32	7.65	3.93	1.51	3.52	1.25
Merged-chr9-32623999-2	chr9	32623891	32624091	+	666.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72051.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	12.92	4.28	9.13	7.64	8.59	7.84	7.31	12.0	3.54	5.02	3.52	2.51
Merged-chr2-94436211-2	chr2	94436111	94436311	+	666.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1975.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	7.67	7.29	12.55	4.83	18.82	6.27	8.64	7.37	5.51	6.53	13.57	7.83
Merged-chr18-81916291-3	chr18	81916158	81916358	+	666.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	75822.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	5.65	3.77	7.99	4.83	3.68	6.59	1.66	4.88	7.87	4.52	12.06	8.77
Merged-chr9-120591652-2	chr9	120591553	120591753	+	666.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14322.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	9.69	5.79	7.99	7.24	9.0	8.15	5.31	4.96	10.82	5.52	14.07	4.07
Merged-chr16-3122988-1	chr16	3122888	3123088	+	666.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-469410.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	11.31	4.78	4.56	2.82	4.09	5.64	1.99	2.8	6.69	9.04	17.59	7.52
Merged-chr4-116821091-3	chr4	116821013	116821213	+	666.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146256, exon 1 of 1)	exon (NM_146256, exon 1 of 1)	395.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	3.63	9.31	6.28	10.46	10.23	7.84	1.99	7.82	5.11	11.55	12.56	4.07
Merged-chr17-78249765-1	chr17	78249665	78249865	+	666.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	49517.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	7.67	5.03	3.42	0.8	6.55	6.27	4.65	5.86	6.29	2.51	7.54	3.45
Merged-chr2-121309271-3	chr2	121309169	121309369	+	666.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_032393, exon 7 of 7)	3' UTR (NM_032393, exon 7 of 7)	13815.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	4.85	7.29	5.7	5.63	8.59	10.66	9.63	7.91	8.46	15.06	8.04	10.34
Merged-chr9-23597491-2	chr9	23597388	23597588	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	374412.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	2.02	7.29	9.13	6.44	6.95	3.45	3.99	6.79	16.92	12.55	12.56	7.52
Merged-chr3-98042488-2	chr3	98042390	98042590	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	B1F|SINE|Alu	28952.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.44	4.02	10.84	6.44	9.0	5.96	8.3	7.49	13.57	17.57	9.04	7.21
Merged-chr16-55476997-2	chr16	55476916	55477116	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17715.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	5.65	5.53	2.28	8.45	7.77	5.96	1.33	6.98	14.55	12.05	6.03	5.64
Merged-chr8-117500462-2	chr8	117500373	117500573	+	666.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	2198.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	8.08	11.07	5.13	6.44	5.32	12.23	4.98	5.1	5.31	6.03	6.53	5.01
Merged-chr2-130411959-2	chr2	130411857	130412057	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5435.0	NM_025753	66766.0	Mm.174834	NM_025753	ENSMUSG00000049692	Tmem239	4933425O20Rik	transmembrane 239	protein-coding	6.86	6.54	1.14	4.02	6.14	12.86	3.32	6.45	16.52	8.54	13.06	4.7
Merged-chr2-84988124-3	chr2	84988048	84988248	+	666.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016914)	promoter-TSS (NM_016914)	-67.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	8.08	8.3	14.83	20.11	8.18	3.45	4.65	5.3	10.42	2.01	10.05	4.7
Merged-chr11-34002414-3	chr11	34002312	34002512	+	666.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-9219.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	5.65	8.05	8.56	6.03	8.59	16.31	4.98	6.48	15.93	11.55	13.06	5.01
Merged-chr8-73677750-3	chr8	73677665	73677865	+	666.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	-324225.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.88	5.79	3.42	13.27	2.45	6.27	5.31	8.78	6.29	3.01	15.58	7.52
Merged-chr11-94340395-2	chr11	94340280	94340480	+	666.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146024)	TTS (NM_146024)	12379.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.85	5.03	5.7	2.82	9.41	10.98	1.99	6.42	4.52	5.52	8.54	4.39
Merged-chr2-13572764-2	chr2	13572671	13572871	+	666.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1540.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	10.09	7.8	5.13	4.42	13.09	5.64	3.32	4.77	6.1	7.53	7.54	1.57
Merged-chr14-44989946-3	chr14	44989835	44990035	+	666.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	1824.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	7.27	6.29	9.7	6.84	9.0	11.6	5.65	7.57	10.03	7.03	1.0	7.52
Merged-chr6-38065633-3	chr6	38065496	38065696	+	666.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080467, intron 14 of 20)	L1MA4A|LINE|L1	-18600.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	5.65	3.77	12.55	8.45	8.18	6.27	6.64	8.38	5.31	1.0	5.53	5.01
Merged-chr15-27662916-2	chr15	27662814	27663014	+	666.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	18628.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.25	6.54	4.56	4.83	6.55	7.53	7.31	8.5	7.47	12.05	7.54	11.59
Merged-chr4-125115812-2	chr4	125115748	125115948	+	666.025024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12033.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	8.88	4.02	5.13	5.23	7.36	7.84	2.99	4.57	12.78	9.04	9.55	7.21
Merged-chr3-94814545-2	chr3	94814450	94814650	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23017.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	5.65	7.04	5.7	10.05	6.95	7.53	5.65	9.62	8.06	8.03	6.53	6.58
Merged-chr16-13239802-1	chr16	13239702	13239902	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-16679.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	4.44	2.26	5.13	7.24	4.09	2.51	0.0	10.49	3.15	4.02	14.07	7.21
Merged-chr5-105975877-1	chr5	105975777	105975977	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99309.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.63	1.51	1.71	2.82	0.82	6.9	3.32	8.58	3.54	3.51	5.02	0.63
Merged-chr16-22031817-1	chr16	22031717	22031917	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027488, intron 9 of 16)	intron (NR_027488, intron 9 of 16)	22333.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	5.65	2.01	2.28	6.03	3.68	4.7	5.31	7.85	7.67	5.52	6.53	2.82
Merged-chr11-49728034-2	chr11	49727944	49728144	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15322.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	6.46	6.54	7.42	8.45	6.14	8.47	4.32	6.84	6.88	13.05	10.55	4.07
Merged-chr17-84291465-1	chr17	84291365	84291565	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	L1M4|LINE|L1	-103518.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.42	1.26	5.7	2.41	8.18	1.25	1.0	7.32	3.15	2.51	3.01	0.0
Merged-chr3-32333602-1	chr3	32333502	32333702	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31887.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	8.88	6.79	3.99	3.62	8.59	7.53	1.66	3.56	9.83	5.52	10.05	2.51
Merged-chr8-14072678-1	chr8	14072578	14072778	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034862, intron 2 of 5)	intron (NM_001034862, intron 2 of 5)	17649.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	2.42	3.27	1.14	2.01	9.82	4.7	3.32	5.41	4.52	4.02	2.51	2.51
Merged-chr18-80047248-1	chr18	80047148	80047348	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_053117, intron 1 of 2)	CpG	353.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.83	6.29	7.42	1.61	10.64	5.02	4.32	8.75	1.57	7.53	7.03	0.63
Merged-chr13-22049941-1	chr13	22049841	22050041	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	6711.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	4.04	4.28	2.85	2.41	0.82	4.08	1.99	7.04	6.49	10.04	11.05	6.89
Merged-chr16-25964077-1	chr16	25963977	25964177	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 14 of 14)	intron (NM_173379, intron 14 of 14)	141707.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	2.83	2.52	0.0	2.41	6.95	2.2	0.33	4.54	6.69	3.51	6.03	6.89
Merged-chr7-127630099-1	chr7	127629999	127630199	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14827.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	1.21	4.28	5.13	12.47	4.91	1.57	2.66	7.07	8.65	5.02	8.04	1.88
Merged-chr7-80755673-1	chr7	80755573	80755773	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	47658.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.44	1.76	3.99	8.04	7.77	3.14	2.66	7.4	1.18	0.0	0.5	1.57
Merged-chr2-71546593-1	chr2	71546493	71546693	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_010054, exon 1 of 3)	5' UTR (NM_010054, exon 1 of 3)	161.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	1.21	6.29	2.85	3.22	0.82	1.88	4.65	0.62	3.93	2.01	3.01	3.13
Merged-chrX-160137515-1	chrX	160137415	160137615	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008810, intron 1 of 10)	intron (NM_008810, intron 1 of 10)	915.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	3.23	4.53	0.57	2.01	4.91	1.57	3.32	6.2	2.75	2.51	10.55	3.76
Merged-chr11-93972421-1	chr11	93972321	93972521	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3900.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	4.04	5.28	2.85	2.41	7.36	8.15	2.66	5.94	3.15	5.52	5.02	3.13
Merged-chr8-121635761-1	chr8	121635661	121635861	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	16172.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	1.21	1.01	5.7	2.41	4.5	7.21	4.65	7.18	0.39	0.5	4.52	5.64
Merged-chr11-29307869-1	chr11	29307769	29307969	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-60597.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	6.86	12.32	8.56	10.05	2.05	1.57	1.99	0.5	0.59	0.5	2.51	1.57
Merged-chr8-126683690-1	chr8	126683590	126683790	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90254.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.63	5.28	10.27	2.82	4.91	5.33	4.98	5.89	4.92	3.51	4.52	1.88
Merged-chr1-37457782-1	chr1	37457682	37457882	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 8 of 15)	intron (NM_173870, intron 8 of 15)	27643.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	2.42	2.77	2.28	1.61	1.23	8.78	0.0	6.06	3.34	3.01	5.53	1.25
Merged-chr2-44275506-1	chr2	44275406	44275606	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-210182.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	2.42	2.77	3.42	0.8	2.05	3.14	3.65	5.83	2.56	5.02	1.0	4.7
Merged-chr5-69522286-1	chr5	69522186	69522386	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023784, intron 3 of 5)	intron (NM_023784, intron 3 of 5)	20361.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.81	5.03	3.42	4.02	2.45	4.39	5.31	5.19	7.28	10.54	1.0	1.25
Merged-chr18-57597761-1	chr18	57597661	57597861	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	MTC|LTR|ERVL-MaLR	40824.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	3.23	5.53	14.83	1.61	7.77	3.76	4.98	6.56	7.67	3.01	3.52	5.64
Merged-chr3-89731189-2	chr3	89731091	89731291	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146296, intron 1 of 14)	intron (NM_001146296, intron 1 of 14)	473.0	NM_019655	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	2.02	5.28	3.42	10.46	6.55	3.14	3.65	9.0	10.62	14.56	6.53	10.65
Merged-chr1-74712724-1	chr1	74712624	74712824	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-811.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	9.29	6.79	8.56	8.85	4.91	5.64	8.3	8.75	6.29	4.52	10.05	7.83
Merged-chr3-88754495-2	chr3	88754387	88754587	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018804, intron 2 of 3)	B3A|SINE|B2	18112.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	7.67	9.06	14.26	8.85	8.18	15.37	4.32	8.97	14.55	6.53	3.52	3.13
Merged-chr2-25534347-1	chr2	25534247	25534447	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009422, intron 4 of 10)	intron (NM_009422, intron 4 of 10)	12593.0	NM_001290413	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	5.65	13.08	9.7	1.21	6.95	7.21	4.98	1.21	8.65	5.02	4.02	5.33
Merged-chr15-102274171-2	chr15	102274081	102274281	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5275.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	9.69	6.54	1.71	2.01	4.09	7.53	2.66	5.97	4.33	3.01	11.05	5.33
Merged-chr3-107113400-1	chr3	107113300	107113500	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11833.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.81	3.77	0.0	0.0	4.91	2.51	1.0	5.86	2.95	4.02	2.01	2.19
Merged-chr4-143210953-1	chr4	143210853	143211053	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1756.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	4.04	2.77	1.14	3.62	2.45	7.21	1.99	4.71	5.9	4.52	6.03	3.13
Merged-chr9-44655886-1	chr9	44655786	44655986	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-17347.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	4.04	2.52	0.57	1.61	3.27	6.9	0.33	6.2	7.47	12.05	5.53	3.45
Merged-chr8-84592182-2	chr8	84592101	84592301	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252060, intron 30 of 47)	LTR16C|LTR|ERVL	70651.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.27	2.77	3.42	1.21	0.82	6.59	2.33	6.59	11.21	11.05	1.51	5.64
Merged-chr15-7130035-1	chr15	7129935	7130135	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358593, intron 1 of 19)	intron (NM_001358593, intron 1 of 19)	463.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.42	5.28	3.42	3.22	8.59	5.02	1.0	6.11	7.87	4.02	12.56	7.83
Merged-chr13-74247225-1	chr13	74247125	74247325	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-38525.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	4.44	4.53	3.99	4.42	4.91	3.14	4.32	5.94	3.34	3.01	3.52	2.51
Merged-chr9-83528445-1	chr9	83528345	83528545	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19893.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.62	0.0	3.42	0.8	6.14	1.57	5.31	5.36	0.79	0.0	1.0	4.39
Merged-chr1-135705712-1	chr1	135705612	135705812	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14351.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	1.62	0.5	7.99	0.8	0.0	0.63	8.97	6.5	7.87	4.52	3.01	4.07
Merged-chr3-144586867-3	chr3	144586770	144586970	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	16443.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	18.17	8.3	6.28	3.22	9.82	12.54	7.64	1.85	11.01	16.07	6.53	0.63
Merged-chr6-31399744-1	chr6	31399644	31399844	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	916.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.44	8.05	9.13	6.84	7.77	5.33	6.31	6.14	8.06	8.54	13.06	5.33
Merged-chr8-111551971-1	chr8	111551871	111552071	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	13628.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	2.42	3.02	3.42	1.21	3.27	7.84	2.99	5.33	4.33	2.51	0.0	5.95
Merged-chr6-146669067-1	chr6	146668967	146669167	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11849.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	0.0	2.77	0.0	4.42	2.05	7.53	2.66	4.93	0.98	0.0	1.51	1.88
Merged-chrX-7842474-1	chrX	7842374	7842574	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138604, exon 1 of 9)	exon (NM_138604, exon 1 of 9)	392.0	NM_001290537	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	2.42	3.52	11.98	5.23	3.27	3.14	7.64	3.9	10.03	13.56	11.56	11.28
Merged-chr16-49819721-1	chr16	49819621	49819821	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-35933.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	2.52	1.71	3.22	7.77	4.39	3.32	5.58	5.51	6.53	7.54	1.57
Merged-chr2-129299328-1	chr2	129299228	129299428	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010554)	TTS (NM_010554)	1958.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	9.69	18.61	4.56	1.21	4.5	7.21	0.33	1.71	8.65	10.04	3.52	6.27
Merged-chr14-67012716-1	chr14	67012616	67012816	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3839.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	6.46	5.79	4.56	1.61	7.77	2.51	4.32	6.84	7.08	8.54	3.52	2.82
Merged-chr9-71188803-2	chr9	71188681	71188881	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	MLT1D|LTR|ERVL-MaLR	20005.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	8.88	7.29	10.84	5.63	5.32	10.66	1.0	3.9	12.39	9.04	10.05	4.39
Merged-chr4-45528714-1	chr4	45528614	45528814	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2114.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.42	4.53	2.85	4.02	6.95	3.76	10.63	5.92	3.34	3.01	5.02	7.83
Merged-chr10-93919687-1	chr10	93919587	93919787	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28485.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	2.83	3.02	9.7	6.44	1.23	1.88	5.98	6.5	2.95	2.51	3.01	1.25
Merged-chr13-3896166-1	chr13	3896066	3896266	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2585.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	1.21	5.28	4.56	2.41	7.77	1.88	5.31	5.72	5.51	7.03	3.52	4.39
Merged-chr12-83921336-1	chr12	83921236	83921436	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073564, intron 1 of 12)	CpG	598.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	6.86	1.76	2.28	2.41	10.64	2.51	4.32	5.55	2.75	4.02	2.51	5.33
Merged-chr16-70414881-2	chr16	70414779	70414979	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	100930.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.42	4.78	3.99	3.62	5.73	5.02	5.65	4.12	10.23	7.53	6.03	11.28
Merged-chr4-129832598-1	chr4	129832498	129832698	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	11890.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.85	3.27	2.85	5.63	6.55	8.15	5.31	6.06	4.52	1.51	6.03	2.51
Merged-chr12-100398034-2	chr12	100397946	100398146	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121437.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	5.25	3.52	2.28	6.44	6.55	6.9	3.65	11.92	7.87	2.01	10.05	0.63
Merged-chr8-128436317-1	chr8	128436217	128436417	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	77076.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	9.69	1.26	2.28	4.02	6.95	4.39	4.65	10.91	2.75	5.02	8.54	4.39
Merged-chr3-144679759-1	chr3	144679659	144679859	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40576.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.06	3.27	7.99	10.86	7.77	6.27	17.27	15.17	9.24	9.04	7.03	5.95
Merged-chr14-105676609-1	chr14	105676509	105676709	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52839.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	10.5	4.02	6.85	1.21	7.77	3.14	7.64	7.63	5.9	1.0	1.0	2.19
Merged-chr11-97663752-3	chr11	97663703	97663903	+	665.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139311, intron 1 of 19)	intron (NM_139311, intron 1 of 19)	391.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	5.25	5.79	5.7	6.44	6.55	6.9	4.65	1.4	10.23	8.54	6.03	3.76
Merged-chr15-80080800-3	chr15	80080718	80080918	+	665.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013762, intron 4 of 9)	intron (NM_013762, intron 4 of 9)	2088.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	10.5	3.77	9.13	8.45	9.41	11.6	5.65	6.73	13.57	6.53	8.04	7.83
Merged-chr16-3776506-2	chr16	3776389	3776589	+	665.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32390.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	6.46	4.53	3.99	4.02	6.55	6.9	3.32	4.96	12.19	12.05	17.08	8.77
Merged-chr2-150894746-2	chr2	150894626	150894826	+	665.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	10005.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.85	7.55	9.13	4.02	8.59	5.02	3.99	5.89	18.69	9.54	6.53	7.21
Merged-chr14-22102574-3	chr14	22102483	22102683	+	665.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	82871.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	2.42	1.01	13.12	12.87	1.64	6.27	9.97	14.72	3.93	8.54	9.55	8.46
Merged-chr6-34041025-3	chr6	34040915	34041115	+	665.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028886, intron 3 of 19)	MER5A|DNA|hAT-Charlie	11567.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	6.86	8.8	6.28	15.28	5.73	5.64	2.99	9.36	12.39	12.05	13.57	9.08
Merged-chr5-64202491-2	chr5	64202399	64202599	+	665.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27858.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.09	15.09	4.56	7.24	6.14	13.48	3.99	6.7	16.33	15.06	14.07	10.65
Merged-chr3-89360528-2	chr3	89360491	89360691	+	665.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029974, intron 3 of 15)	L2|LINE|L2	4662.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	2.83	4.02	3.42	4.83	2.45	2.82	0.66	3.31	1.57	4.02	1.0	2.51
Merged-chr12-44292474-2	chr12	44292367	44292567	+	665.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026164, intron 5 of 9)	intron (NM_026164, intron 5 of 9)	23313.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	1.62	3.02	3.42	5.23	4.5	6.9	4.65	9.45	7.47	9.04	14.07	8.14
Merged-chr8-86852424-2	chr8	86852325	86852525	+	665.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 3 of 6)	intron (NM_030563, intron 3 of 6)	32833.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	10.5	5.53	7.42	7.64	6.55	8.15	2.66	10.85	7.87	6.53	6.03	5.33
Merged-chr15-97782865-3	chr15	97782714	97782914	+	665.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1551.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	9.69	5.53	4.56	4.02	9.0	6.27	7.64	5.72	7.28	4.02	1.0	4.7
Merged-chr5-65198540-1	chr5	65198440	65198640	+	665.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-1156.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	5.65	3.02	3.42	3.22	6.55	12.54	6.31	6.06	5.7	5.52	4.52	6.58
Merged-chr14-66241919-3	chr14	66241819	66242019	+	665.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28095.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.46	6.29	26.24	6.03	8.18	6.9	4.32	7.32	19.67	10.54	17.08	11.28
Merged-chr13-37509545-1	chr13	37509445	37509645	+	665.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	164200.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.42	5.53	6.28	3.22	5.73	5.64	7.64	3.81	6.88	2.51	4.02	2.82
Merged-chr12-87261649-3	chr12	87261569	87261769	+	665.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142581, intron 2 of 18)	MTC|LTR|ERVL-MaLR	2575.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	6.46	9.06	11.41	3.22	11.05	7.53	2.99	4.15	9.83	11.05	7.54	2.51
Merged-chr9-110742424-2	chr9	110742342	110742542	+	665.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001083936, exon 1 of 14)	5' UTR (NM_001083936, exon 1 of 14)	168.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	9.69	9.56	5.7	4.83	9.0	7.53	4.65	5.64	8.26	4.02	7.03	7.83
Merged-chr8-64417150-2	chr8	64417063	64417263	+	665.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97278.0	NR_030491	735270.0		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	2.42	0.0	1.14	0.8	4.91	5.64	3.32	5.27	12.0	8.03	14.07	10.34
Merged-chr5-30344054-2	chr5	30343946	30344146	+	665.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033460, intron 2 of 15)	intron (NM_001033460, intron 2 of 15)	2383.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	10.5	7.04	5.7	13.27	9.82	14.74	3.99	8.33	4.72	15.06	12.56	5.33
Merged-chr1-89043155-2	chr1	89043062	89043262	+	665.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	27049.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	7.67	5.79	6.28	2.82	6.14	8.47	3.65	5.13	9.05	8.03	14.57	8.46
Merged-chr10-93310351-3	chr10	93310239	93310439	+	665.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	CpG	820.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	6.46	9.06	2.85	8.04	9.0	10.98	5.98	7.54	7.47	8.54	9.55	7.21
Merged-chr7-99962107-2	chr7	99961982	99962182	+	665.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	18376.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	5.25	5.53	3.42	7.64	9.82	4.39	3.65	7.07	3.54	2.01	4.52	2.51
Merged-chr6-4904237-2	chr6	4904113	4904313	+	665.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 1 of 15)	intron (NM_181595, intron 1 of 15)	893.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.63	7.04	6.85	7.24	6.55	8.78	7.31	15.0	9.24	9.54	10.05	3.13
Merged-chr18-32391546-2	chr18	32391445	32391645	+	665.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-13261.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.85	7.55	10.27	6.44	10.23	15.05	7.31	4.74	6.1	8.54	10.05	6.58
Merged-chr7-27285909-2	chr7	27285805	27286005	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	27144.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	10.5	3.02	6.28	3.22	2.45	2.2	5.65	8.19	10.23	11.55	4.52	5.33
Merged-chr11-106289629-1	chr11	106289529	106289729	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12267.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	4.04	2.52	9.13	5.63	4.91	3.14	7.97	8.24	11.8	2.51	5.53	4.7
Merged-chr2-25279345-1	chr2	25279245	25279445	+	665.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175300, intron 8 of 12)	intron (NM_175300, intron 8 of 12)	6879.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	7.27	2.77	0.0	2.01	3.68	7.21	0.66	2.89	10.82	10.54	9.04	6.27
Merged-chr10-80063684-1	chr10	80063584	80063784	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183426, exon 17 of 32)	exon (NM_183426, exon 17 of 32)	9665.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	4.04	2.01	3.42	8.45	6.14	1.88	5.98	7.18	8.46	1.51	13.06	7.83
Merged-chr5-99387065-1	chr5	99386965	99387165	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-134138.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.83	10.06	4.56	0.8	5.73	8.78	1.0	4.93	6.49	4.02	3.01	4.39
Merged-chr17-46161854-2	chr17	46161743	46161943	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357745)	promoter-TSS (NM_001357745)	-221.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	6.06	4.53	0.57	4.42	6.55	4.39	2.99	5.38	7.67	4.02	3.52	8.14
Merged-chrX-41837841-1	chrX	41837741	41837941	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033422, intron 18 of 38)	5S|rRNA|rRNA	74060.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	3.23	1.26	10.27	0.4	6.55	7.53	2.99	7.6	1.97	3.51	5.02	2.51
Merged-chr17-36904923-1	chr17	36904823	36905023	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146077, intron 3 of 7)	intron (NM_146077, intron 3 of 7)	6793.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	3.23	2.52	3.42	4.42	4.5	6.59	4.65	7.46	3.93	4.02	6.03	4.07
Merged-chr4-132803770-2	chr4	132803686	132803886	+	665.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-7422.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	14.94	6.54	6.85	1.21	4.91	6.27	0.66	0.84	11.21	12.55	6.53	4.07
Merged-chrX-99975467-1	chrX	99975367	99975567	+	665.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177941)	promoter-TSS (NM_001177941)	-139.0	NM_001177944	13607.0	Mm.328086	NM_010099	ENSMUSG00000059327	Eda	EDA1|Ed1|Eda-A1|Eda-A2|HED|Ta|Tnlg7c|XLHED|tabby	ectodysplasin-A	protein-coding	1.21	3.52	0.0	6.03	4.09	4.08	3.65	11.16	9.44	11.05	19.6	4.39
Merged-chr19-21943614-2	chr19	21943527	21943727	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165287.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.04	3.77	7.42	4.83	6.95	5.64	6.31	6.2	9.44	8.54	11.56	7.21
Merged-chrX-13636530-2	chrX	13636432	13636632	+	665.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011823, intron 2 of 2)	CT-rich|Low_complexity|Low_complexity	3763.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	5.65	7.8	3.42	7.24	3.68	3.76	14.95	7.32	1.77	9.04	7.54	2.51
Merged-chr12-76583066-2	chr12	76582984	76583184	+	665.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-35159.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	11.31	4.02	10.84	9.65	11.86	9.72	5.31	7.23	3.74	0.5	5.53	1.57
Merged-chr8-56615264-3	chr8	56615143	56615343	+	665.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64109.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	13.73	6.79	2.85	10.46	6.95	9.41	13.95	8.21	6.49	9.54	13.06	7.83
Merged-chr1-194993733-2	chr1	194993626	194993826	+	665.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16767.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	3.63	1.26	2.28	6.44	5.32	2.51	5.98	5.69	7.47	5.52	12.06	13.47
Merged-chr4-3810403-2	chr4	3810304	3810504	+	665.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25251.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	14.54	10.31	10.27	6.44	4.91	10.98	3.65	4.29	17.9	20.08	8.54	10.65
Merged-chr6-53216849-2	chr6	53216758	53216958	+	665.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4306.0	NR_073371	231989.0	Mm.372520	NR_073371	ENSMUSG00000107935	Gm4872	D430007I03	predicted gene 4872	ncRNA	2.83	2.01	4.56	13.27	4.09	7.84	7.64	6.76	9.24	2.01	11.56	6.27
Merged-chr5-142903010-3	chr5	142902963	142903163	+	665.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007393)	TTS (NM_007393)	3691.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	10.9	6.04	7.99	10.05	1.23	3.76	3.99	0.7	6.29	5.52	5.02	8.14
Merged-chr11-78353260-2	chr11	78353161	78353361	+	665.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6551.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.85	5.79	3.42	1.21	11.05	10.98	5.31	5.72	11.6	19.08	6.03	6.89
Merged-chr8-3284249-1	chr8	3284149	3284349	+	665.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4632.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	6.06	3.02	4.56	5.23	8.59	6.59	5.65	5.97	1.97	3.51	6.53	2.51
Merged-chr4-88741650-1	chr4	88741550	88741750	+	665.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13218.0	NM_001085528	435791.0	Mm.473673	NM_001085528	ENSMUSG00000094618	Gm13271	Ifnz	predicted gene 13271	protein-coding	10.5	8.8	13.69	9.65	2.45	1.57	0.0	3.45	7.47	8.03	7.54	2.19
Merged-chr3-90432610-1	chr3	90432510	90432710	+	665.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178876, intron 1 of 30)	intron (NM_178876, intron 1 of 30)	1026.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	1.21	2.52	2.28	0.8	15.96	7.53	9.3	5.52	4.13	2.51	1.0	2.51
Merged-chr7-83610120-1	chr7	83610020	83610220	+	665.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 14 of 22)	RMER15|LTR|ERVL	-21897.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	3.63	0.5	2.28	2.41	1.64	0.63	1.66	2.92	10.62	12.55	12.06	5.33
Merged-chr10-59950821-1	chr10	59950721	59950921	+	665.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029083, exon 3 of 3)	exon (NM_029083, exon 3 of 3)	949.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	6.86	4.53	12.55	1.61	9.41	5.64	4.98	5.5	7.67	6.53	17.08	5.01
Merged-chr5-73651081-1	chr5	73650981	73651181	+	665.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178387)	promoter-TSS (NM_178387)	-299.0	NM_178387	73472.0	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	2.02	3.77	2.28	0.8	4.91	3.45	2.99	4.74	5.7	3.01	2.01	5.33
Merged-chr6-131433665-2	chr6	131433577	131433777	+	665.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-45227.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	8.88	6.04	0.57	5.63	1.64	5.02	7.31	8.36	2.95	7.53	2.51	2.51
Merged-chr16-64865555-3	chr16	64865463	64865663	+	665.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	13562.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	8.48	5.03	13.12	10.86	6.55	12.23	16.28	6.53	9.64	10.04	11.05	9.71
Merged-chr6-15626314-2	chr6	15626211	15626411	+	665.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.27	4.02	3.99	6.03	9.82	6.27	9.63	4.51	7.28	5.02	13.57	6.89
Merged-chr10-45486253-2	chr10	45486198	45486398	+	665.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-16097.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	5.65	5.03	9.13	7.64	6.14	11.92	3.65	5.78	4.92	6.03	8.04	11.28
Merged-chr11-57674099-3	chr11	57674011	57674211	+	665.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-24617.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	17.77	8.05	9.7	10.05	4.91	5.64	0.66	3.73	14.36	6.03	7.03	7.52
Merged-chr6-117882328-3	chr6	117882200	117882400	+	665.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18040.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	2.02	5.28	6.28	7.24	6.55	3.76	7.97	6.28	9.44	7.53	9.55	7.52
Merged-chr17-71187968-2	chr17	71187871	71188071	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	3993.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	8.88	8.8	4.56	2.41	7.77	4.7	4.32	2.21	17.51	14.56	8.04	2.19
Merged-chr7-48894335-1	chr7	48894235	48894435	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12739.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	6.86	6.29	2.85	1.61	6.14	10.35	3.65	5.86	4.33	14.56	7.54	2.82
Merged-chr13-37452643-1	chr13	37452543	37452743	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	107298.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.88	8.55	0.0	4.83	5.73	0.94	1.99	4.96	4.72	1.0	0.5	4.39
Merged-chr4-141976292-1	chr4	141976192	141976392	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-6700.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	10.09	1.51	1.14	4.83	1.64	4.7	4.32	3.06	11.01	6.03	13.06	9.71
Merged-chr17-83123125-1	chr17	83123025	83123225	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44900.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	5.25	3.52	5.13	4.42	6.55	1.88	1.33	4.35	2.75	1.51	5.53	4.7
Merged-chr12-55489870-1	chr12	55489770	55489970	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_010907, exon 6 of 6)	3' UTR (NM_010907, exon 6 of 6)	2777.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	12.11	8.05	9.13	4.02	7.77	14.74	4.65	3.11	12.98	12.05	8.54	1.57
Merged-chr12-87374343-2	chr12	87374242	87374442	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	14013.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	8.48	4.02	12.55	6.44	1.64	8.78	6.31	8.36	3.15	12.05	13.57	3.45
Merged-chr9-21286661-2	chr9	21286511	21286711	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145416, exon 3 of 19)	exon (NM_145416, exon 3 of 19)	1358.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.0	1.76	1.14	0.8	2.45	1.57	1.99	1.23	3.74	1.51	2.51	5.95
Merged-chr13-114458519-1	chr13	114458419	114458619	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001301373, exon 1 of 6)	exon (NM_001301373, exon 1 of 6)	432.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	2.02	5.53	8.56	4.02	6.55	3.14	3.99	6.45	5.7	1.51	6.03	2.82
Merged-chr19-4207150-3	chr19	4207068	4207268	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5565.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	6.06	6.79	5.7	11.66	3.68	8.78	4.65	6.64	7.47	10.54	16.08	10.65
Merged-chr15-53673689-1	chr15	53673589	53673789	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	-59410.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	8.08	3.52	7.42	3.62	6.55	2.2	4.65	7.26	3.74	4.52	6.53	2.82
Merged-chr13-102025673-1	chr13	102025573	102025773	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-257456.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	9.29	3.27	3.99	7.24	4.09	5.02	3.32	5.38	9.05	6.03	8.54	4.39
Merged-chr9-21357521-1	chr9	21357421	21357621	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10350.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	5.25	2.52	1.14	8.85	9.0	12.23	4.65	2.16	8.65	9.54	7.54	3.13
Merged-chr5-41187478-1	chr5	41187378	41187578	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	520213.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.25	1.51	3.99	5.63	0.0	0.31	2.33	3.28	8.06	7.53	12.06	10.02
Merged-chr4-117473656-1	chr4	117473556	117473756	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	23396.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.4	2.77	1.14	0.0	1.64	6.27	3.99	6.53	1.18	0.0	1.51	2.82
Merged-chr15-100028313-1	chr15	100028213	100028413	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10351.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.65	3.02	10.27	6.44	4.91	8.15	3.99	7.29	7.28	2.51	5.53	3.45
Merged-chr16-45733359-1	chr16	45733259	45733459	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073572, intron 3 of 4)	MTD|LTR|ERVL-MaLR	-8828.0	NM_019754	56370.0	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	2.42	5.79	1.14	0.8	3.27	4.7	3.65	6.59	0.98	0.0	0.0	1.25
Merged-chr7-142374191-1	chr7	142374091	142374291	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-445.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	9.29	5.28	15.4	6.84	2.86	2.51	2.99	4.26	8.65	4.52	8.04	12.22
Merged-chr5-137062028-1	chr5	137061928	137062128	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008871, exon 9 of 9)	3' UTR (NM_008871, exon 9 of 9)	10244.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	5.25	4.28	1.71	6.03	4.91	5.64	3.65	5.38	6.49	7.03	6.03	7.21
Merged-chr6-141132587-1	chr6	141132487	141132687	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-116682.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	2.02	1.26	3.42	2.01	1.64	0.63	4.98	4.88	0.98	0.0	0.5	0.0
Merged-chr19-25044982-1	chr19	25044882	25045082	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	RLTR20A4|LTR|ERVK	45453.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.81	2.01	1.14	1.61	4.5	0.94	4.65	5.13	2.95	2.01	4.52	0.31
Merged-chr2-131159628-1	chr2	131159528	131159728	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154887, intron 1 of 6)	intron (NR_154887, intron 1 of 6)	453.0	NR_154887	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	12.11	4.78	3.99	6.44	12.27	6.59	5.65	8.47	13.37	7.03	6.53	16.29
Merged-chr6-17652940-1	chr6	17652840	17653040	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007604, intron 3 of 9)	intron (NM_007604, intron 3 of 9)	15930.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.02	2.01	6.28	2.41	3.68	8.47	0.66	4.91	3.93	1.51	0.5	2.82
Merged-chr6-31211292-1	chr6	31211192	31211392	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	7182.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.42	6.54	3.99	0.0	0.82	4.7	3.32	5.55	3.34	1.51	3.01	4.39
Merged-chr9-70891558-2	chr9	70891459	70891659	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	43249.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.46	6.29	7.42	11.26	10.23	4.08	3.99	5.36	6.69	4.02	7.54	2.51
Merged-chr5-90332166-1	chr5	90332066	90332266	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	B3|SINE|B2	34019.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	3.23	1.76	0.0	4.42	9.82	2.51	0.33	6.08	5.31	4.02	3.01	3.76
Merged-chr11-46437785-1	chr11	46437685	46437885	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001104556, intron 1 of 1)	intron (NM_001104556, intron 1 of 1)	824.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	1.62	0.25	10.27	7.24	6.14	5.02	3.65	4.21	9.24	7.03	10.55	3.45
Merged-chr19-34445004-1	chr19	34444904	34445104	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	30131.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.81	6.04	8.56	1.21	6.14	8.78	2.66	3.76	8.85	5.02	5.53	2.82
Merged-chr13-107763342-1	chr13	107763242	107763442	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75945.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	2.26	2.28	0.8	2.86	7.21	2.99	4.93	7.87	1.0	1.0	2.51
Merged-chr13-93816279-2	chr13	93816166	93816366	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	25489.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	3.63	8.3	3.99	6.03	7.77	6.9	2.33	6.67	11.01	5.02	8.04	4.7
Merged-chr15-64263199-1	chr15	64263099	64263299	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	49474.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.65	6.54	9.13	1.61	7.77	5.02	2.33	9.76	6.29	9.04	9.55	13.78
Merged-chr7-24448950-1	chr7	24448850	24449050	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3268.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	1.62	0.25	0.0	0.4	1.23	1.57	6.31	4.37	0.98	0.0	2.01	1.57
Merged-chr8-24525289-2	chr8	24525192	24525392	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40306.0	NR_035483									4.04	7.04	9.13	7.64	7.77	10.35	2.66	8.89	4.33	15.06	13.06	3.13
Merged-chr10-44481593-1	chr10	44481493	44481693	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22845.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.67	3.52	6.85	6.84	4.5	4.7	3.99	11.52	7.28	2.51	4.52	4.7
Merged-chr6-24712655-1	chr6	24712555	24712755	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20590.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	1.21	3.27	1.57	5.65	4.23	0.98	3.01	0.0	0.63
Merged-chr13-32934757-1	chr13	32934657	32934857	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-30756.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	6.06	2.77	1.71	3.22	8.18	5.64	2.33	1.91	8.06	6.53	4.52	10.34
Merged-chr8-111678289-2	chr8	111678172	111678372	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11402.0	NR_106044	102466993.0		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	9.69	6.54	3.42	11.26	8.18	6.9	4.98	5.27	14.36	5.52	8.04	9.4
Merged-chr11-60175835-1	chr11	60175735	60175935	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037764, intron 1 of 4)	CpG	24782.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	10.9	7.04	5.13	3.22	1.64	5.02	4.98	2.07	8.06	2.01	5.02	2.51
Merged-chr3-79885952-2	chr3	79885865	79886065	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133187)	promoter-TSS (NM_133187)	35.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.63	6.54	10.27	9.65	6.14	7.21	9.63	6.93	1.97	7.03	5.02	5.64
Merged-chr2-48827575-1	chr2	48827475	48827675	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	13466.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.44	4.53	5.7	4.83	6.14	6.27	3.99	5.47	10.42	5.02	5.02	2.19
Merged-chr15-77624875-2	chr15	77624777	77624977	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18409.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	12.92	9.06	6.85	1.61	4.09	10.03	2.99	1.46	13.96	12.05	5.02	13.16
Merged-chr7-24653870-1	chr7	24653770	24653970	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7424.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	6.46	5.28	3.42	2.82	5.32	10.66	1.99	4.51	8.65	3.51	11.56	5.95
Merged-chr6-129231709-1	chr6	129231609	129231809	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040265)	TTS (NR_040265)	6336.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	3.63	1.51	3.99	1.21	4.09	5.96	8.3	5.3	6.29	4.52	8.54	7.83
Merged-chr10-75830383-1	chr10	75830283	75830483	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	4498.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.81	2.52	2.28	3.62	2.45	4.08	5.98	4.82	2.36	1.51	4.02	1.88
Merged-chr15-41778868-1	chr15	41778768	41778968	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-10127.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	1.21	0.5	0.57	0.0	1.64	3.45	3.32	7.43	5.7	4.02	8.54	3.13
Merged-chr2-93988688-1	chr2	93988588	93988788	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026944, intron 8 of 9)	intron (NM_026944, intron 8 of 9)	8654.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	3.23	3.52	2.28	1.61	3.27	0.0	4.32	6.98	0.59	0.5	2.01	0.94
Merged-chr5-149245634-1	chr5	149245534	149245734	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19370.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.25	2.77	0.57	0.8	5.73	2.2	4.65	6.73	4.13	7.53	4.02	3.76
Merged-chr4-130900061-1	chr4	130899961	130900161	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13273.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.27	2.52	3.99	2.41	3.68	1.88	5.31	6.79	7.08	3.01	5.53	8.14
Merged-chr4-141248014-2	chr4	141247926	141248126	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172520, exon 7 of 17)	exon (NM_172520, exon 7 of 17)	5142.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	8.48	9.31	2.28	3.22	3.68	2.51	5.31	4.57	2.75	6.03	8.54	1.25
Merged-chr5-125053313-1	chr5	125053213	125053413	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	49838.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	3.63	4.53	4.56	8.45	9.41	7.84	1.0	5.61	4.13	1.51	3.01	3.13
Merged-chr8-34876845-1	chr8	34876745	34876945	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 5 of 26)	MTE2a|LTR|ERVL-MaLR	69235.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.63	3.27	6.85	4.02	1.64	4.08	4.65	7.79	4.33	4.52	2.51	1.57
Merged-chr9-114527263-1	chr9	114527163	114527363	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042503, intron 1 of 3)	intron (NM_001042503, intron 1 of 3)	-30719.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	11.31	5.79	2.28	4.83	5.73	14.11	3.99	5.66	6.69	7.03	2.01	0.94
Merged-chr2-60962423-1	chr2	60962323	60962523	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	CpG	781.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.86	2.52	4.56	0.0	4.91	1.25	3.32	5.13	2.75	4.52	5.02	5.64
Merged-chr15-103383092-1	chr15	103382992	103383192	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16301.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	1.62	6.04	7.42	1.61	4.09	3.45	3.32	3.45	7.67	6.03	3.01	2.82
Merged-chr6-28136082-3	chr6	28135963	28136163	+	664.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-917.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	8.88	5.28	8.56	13.67	9.41	7.84	6.64	11.8	7.47	9.54	14.07	12.22
Merged-chr18-84784856-3	chr18	84784750	84784950	+	664.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40783.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	8.48	8.05	6.85	7.64	9.82	5.96	7.64	6.28	10.42	10.04	6.03	8.77
Merged-chr11-3456478-3	chr11	3456360	3456560	+	664.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028317, intron 1 of 3)	intron (NR_028317, intron 1 of 3)	-3504.0	NM_001290473	193670.0	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	12.52	7.29	2.28	1.61	4.91	8.78	1.33	4.57	9.64	4.52	8.04	3.13
Merged-chr7-66387722-3	chr7	66387604	66387804	+	664.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 1 of 33)	CpG	637.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	4.44	9.56	8.56	1.21	8.18	10.98	5.31	5.94	15.34	10.04	4.02	7.21
Merged-chr5-124013988-2	chr5	124013866	124014066	+	664.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17114.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	8.08	7.8	2.28	1.61	5.73	6.59	1.0	6.0	8.46	2.51	1.0	5.33
Merged-chr11-51968297-1	chr11	51968197	51968397	+	664.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029976, intron 1 of 2)	intron (NM_029976, intron 1 of 2)	666.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.85	4.53	3.99	3.22	8.18	7.53	6.31	6.2	6.1	6.53	6.53	1.57
Merged-chr16-39192507-2	chr16	39192411	39192611	+	664.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3561.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.02	1.51	2.28	8.04	8.59	2.51	3.99	6.48	12.59	7.03	17.08	5.01
Merged-chr3-68717498-1	chr3	68717398	68717598	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26074.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	7.27	5.03	5.13	4.42	2.86	7.21	11.29	7.74	6.69	8.03	7.54	6.27
Merged-chr2-49727389-3	chr2	49727272	49727472	+	664.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-60314.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	8.48	5.03	6.85	9.25	7.36	6.27	2.66	9.06	12.78	8.54	9.04	8.46
Merged-chr13-45372391-1	chr13	45372291	45372491	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-17351.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.23	2.52	9.13	4.02	9.82	9.72	3.99	4.91	2.16	2.01	3.01	0.0
Merged-chr2-150783000-1	chr2	150782900	150783100	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3796.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	11.31	3.52	2.28	2.82	10.23	12.54	8.97	5.33	10.62	7.03	20.1	6.27
Merged-chr4-82321304-1	chr4	82321204	82321404	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286127, intron 9 of 10)	intron (NM_001286127, intron 9 of 10)	184475.0	NM_001286127	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	5.25	3.52	5.7	5.23	10.23	7.53	8.64	6.03	1.18	2.51	0.0	3.13
Merged-chr11-64628306-1	chr11	64628206	64628406	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-191632.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	3.23	5.03	6.85	4.02	4.5	10.98	11.29	5.44	4.13	5.52	6.53	2.51
Merged-chr11-116429099-1	chr11	116428999	116429199	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4995.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	8.08	3.27	6.28	2.41	5.73	8.15	1.66	5.5	7.08	6.03	4.02	2.51
Merged-chr4-140700445-3	chr4	140700351	140700551	+	664.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-1022.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	6.46	7.29	15.97	11.26	11.05	5.96	6.98	7.12	12.0	11.05	12.06	6.89
Merged-chr6-124717052-2	chr6	124716948	124717148	+	664.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029554)	TTS (NR_029554)	937.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	9.29	2.77	5.13	8.45	10.23	7.21	8.64	4.09	10.82	9.54	17.08	7.83
Merged-chr7-66121221-2	chr7	66121126	66121326	+	664.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	11711.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.04	5.79	7.99	7.64	13.09	9.09	7.31	6.17	8.85	9.54	9.04	6.89
Merged-chr12-3409185-3	chr12	3409087	3409287	+	664.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	17560.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	4.04	3.77	11.41	8.04	4.91	10.35	7.97	6.31	9.64	5.52	15.07	3.45
Merged-chr5-135145778-3	chr5	135145706	135145906	+	664.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3905.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	2.83	6.04	5.7	8.04	8.18	11.29	6.64	9.28	11.41	12.55	10.05	14.41
Merged-chr12-80877907-3	chr12	80877832	80878032	+	664.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	46515.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	7.27	7.04	9.13	17.7	11.05	9.09	4.98	9.36	7.87	18.08	9.55	6.27
Merged-chr8-108722886-1	chr8	108722786	108722986	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8242.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.46	5.03	6.28	3.62	9.41	10.35	5.98	5.27	4.13	4.52	5.02	4.39
Merged-chr7-100988255-1	chr7	100988155	100988355	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23743.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	7.27	6.29	4.56	11.66	3.68	11.92	5.31	6.17	9.24	14.56	9.55	5.33
Merged-chr4-109987827-1	chr4	109987727	109987927	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	9802.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	2.42	1.51	2.28	2.41	6.95	3.76	5.31	6.48	3.15	5.52	4.02	6.58
Merged-chr16-87445262-1	chr16	87445162	87445362	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-4670.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	16.96	8.3	18.83	7.64	2.86	0.63	3.99	0.03	9.24	2.01	3.01	3.45
Merged-chr2-166575140-2	chr2	166575043	166575243	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 32 of 39)	intron (NM_177782, intron 32 of 39)	10621.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	7.67	4.28	6.85	5.63	7.36	7.84	4.65	7.71	5.7	10.04	13.57	5.95
Merged-chr8-88361403-2	chr8	88361321	88361521	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012047, intron 2 of 16)	intron (NM_012047, intron 2 of 16)	770.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	3.63	4.53	2.28	8.04	2.86	7.84	3.65	4.12	8.85	2.51	5.02	7.21
Merged-chr10-41891518-2	chr10	41891416	41891616	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	4077.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	7.67	5.79	7.42	8.85	7.36	5.02	3.99	8.19	9.24	17.07	7.54	6.27
Merged-chr14-84444413-1	chr14	84444313	84444513	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001013753, exon 1 of 4)	5' UTR (NM_001013753, exon 1 of 4)	850.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	2.42	4.53	4.56	0.8	7.36	4.39	6.31	6.5	2.16	2.01	3.01	5.01
Merged-chr17-73393562-3	chr17	73393475	73393675	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	5721.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	8.08	4.02	10.27	10.46	8.18	5.96	11.63	19.71	9.24	0.0	8.54	3.45
Merged-chr6-139874626-1	chr6	139874526	139874726	+	664.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207683, intron 23 of 31)	intron (NM_207683, intron 23 of 31)	33181.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	1.62	1.51	0.0	0.0	4.09	2.82	0.0	6.03	9.05	9.54	14.57	6.27
Merged-chr12-105705973-1	chr12	105705873	105706073	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030187)	promoter-TSS (NM_030187)	-9.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	6.06	6.54	7.99	0.0	4.91	6.27	6.31	5.19	7.28	10.04	13.06	2.82
Merged-chr14-120326620-2	chr14	120326544	120326744	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	B4|SINE|B4	20192.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.06	2.52	7.99	6.84	5.32	5.02	5.65	8.58	9.64	7.03	12.56	3.76
Merged-chr4-148688744-2	chr4	148688650	148688850	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45433.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.63	9.06	15.97	6.03	8.18	10.98	4.98	4.29	1.18	0.5	0.0	0.63
Merged-chr2-22777620-1	chr2	22777520	22777720	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	3293.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.81	5.53	5.7	0.0	0.82	9.09	2.33	2.33	2.75	5.02	5.02	2.19
Merged-chr3-104672209-2	chr3	104672109	104672309	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33545.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	7.27	4.28	10.27	12.87	4.91	5.64	3.65	11.36	5.9	0.0	6.03	5.95
Merged-chr5-130256092-1	chr5	130255992	130256192	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	473.0	NM_178897	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	5.65	6.79	3.42	1.21	0.82	2.82	1.33	0.36	3.74	2.01	8.54	2.51
Merged-chr11-76440068-2	chr11	76439977	76440177	+	664.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	28388.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.67	6.79	9.7	17.7	10.23	9.72	7.64	7.91	6.1	11.05	3.01	6.58
Merged-chr14-122406750-1	chr14	122406650	122406850	+	664.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033326, intron 1 of 3)	CpG	44365.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	4.44	4.28	2.28	6.03	7.36	7.21	7.31	7.07	7.47	9.54	6.53	2.82
Merged-chr2-91971129-3	chr2	91971110	91971310	+	664.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7647.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	10.09	6.54	5.13	2.41	7.36	5.02	2.33	6.39	3.15	3.01	7.03	3.13
Merged-chr8-104028867-2	chr8	104028743	104028943	+	664.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72782.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.04	2.77	3.42	0.8	4.09	8.47	4.98	7.77	7.28	9.54	14.57	3.13
Merged-chr2-116913728-2	chr2	116913646	116913846	+	664.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040335)	TTS (NR_040335)	13594.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	2.42	7.55	5.13	3.22	4.5	12.86	4.98	5.8	8.65	1.51	13.57	4.39
Merged-chr6-72161190-2	chr6	72161064	72161264	+	664.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37967.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.67	5.28	4.56	2.41	9.82	2.2	4.32	6.03	1.97	2.51	3.52	3.76
Merged-chr1-161354446-1	chr1	161354346	161354546	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40992.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	8.88	8.8	8.56	11.66	1.23	3.45	2.99	1.51	4.92	5.02	3.01	5.01
Merged-chr10-98494541-3	chr10	98494449	98494649	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142682.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	9.69	9.06	6.85	9.65	7.36	5.96	4.65	10.82	10.62	12.55	17.59	5.95
Merged-chr17-6793689-3	chr17	6793629	6793829	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10949.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	8.88	5.28	2.28	8.04	5.73	5.64	2.99	7.04	6.49	3.51	10.05	3.45
Merged-chr6-54088344-3	chr6	54088252	54088452	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	48420.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.85	7.04	6.28	12.47	4.91	10.03	2.99	5.44	16.33	10.54	8.04	4.39
Merged-chr13-86020474-1	chr13	86020374	86020574	+	664.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	26321.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	2.42	1.51	0.0	0.0	7.36	4.39	7.64	13.12	0.59	0.0	1.51	0.0
Merged-chr17-36193759-2	chr17	36193662	36193862	+	664.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3611.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.81	0.5	0.0	0.0	11.45	8.47	3.65	6.17	9.05	10.04	9.55	5.33
Merged-chr8-64831842-3	chr8	64831740	64831940	+	664.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	18084.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	11.31	7.04	9.13	7.24	11.45	7.53	6.64	13.4	8.06	8.03	32.66	8.46
Merged-chr3-90466680-3	chr3	90466584	90466784	+	664.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008727)	promoter-TSS (NM_008727)	-818.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	8.08	6.29	5.7	5.63	9.0	7.84	1.0	7.32	11.01	13.05	13.06	5.64
Merged-chr5-138258835-3	chr5	138258721	138258921	+	664.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153161)	TTS (NM_153161)	3339.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	8.08	8.8	6.85	2.82	14.32	7.21	7.31	11.5	12.78	8.54	1.51	2.19
Merged-chr19-10318003-2	chr19	10317910	10318110	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13133.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.04	2.01	2.28	8.04	6.95	8.47	1.66	8.75	8.06	2.01	7.03	8.14
Merged-chr17-88255860-3	chr17	88255752	88255952	+	664.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130340.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	9.29	5.28	5.13	11.26	6.55	8.78	7.31	5.41	10.03	8.03	17.08	10.34
Merged-chr10-51497288-2	chr10	51497199	51497399	+	664.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013532)	TTS (NM_013532)	6401.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.04	6.29	2.85	5.23	10.64	15.99	6.98	2.83	6.1	2.51	4.52	1.88
Merged-chr11-20794802-2	chr11	20794716	20794916	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36292.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.44	6.54	4.56	3.22	4.5	10.66	3.65	4.15	7.08	4.02	9.04	5.64
Merged-chr18-20640128-2	chr18	20640021	20640221	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-25129.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	8.08	11.32	5.13	4.42	7.36	7.53	1.33	10.63	6.29	8.54	6.03	7.52
Merged-chr7-49751363-2	chr7	49751266	49751466	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7740.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	4.44	5.03	4.56	4.02	9.41	12.23	3.99	6.03	10.03	10.54	4.02	5.01
Merged-chr2-152187295-3	chr2	152187201	152187401	+	664.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-39539.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	14.13	2.52	5.7	9.65	7.77	12.23	5.31	11.36	9.83	5.02	11.56	7.52
Merged-chr11-99039971-3	chr11	99039872	99040072	+	664.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1272.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	10.09	6.54	9.13	2.82	5.73	9.09	2.66	6.22	7.28	6.53	10.05	7.21
Merged-chr7-126704217-3	chr7	126704110	126704310	+	664.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301374)	promoter-TSS (NM_001301374)	10.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	7.67	7.29	3.42	4.42	9.41	7.21	5.65	3.39	10.62	7.03	12.06	8.77
Merged-chr10-77509853-3	chr10	77509756	77509956	+	664.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	5957.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	7.27	4.78	7.42	6.84	6.95	8.47	1.66	7.46	9.44	6.03	12.06	8.77
Merged-chr4-141015465-2	chr4	141015376	141015576	+	664.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161799, intron 8 of 8)	intron (NM_001161799, intron 8 of 8)	4839.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	3.23	9.06	2.28	4.83	6.95	5.02	5.65	7.18	6.88	6.53	12.56	10.34
Merged-chr9-62998784-3	chr9	62998690	62998890	+	664.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-17911.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.06	6.54	7.42	7.64	12.27	7.21	3.32	5.05	13.18	3.01	13.57	7.21
Merged-chr8-94874482-2	chr8	94874356	94874556	+	664.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	1856.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	7.67	3.27	6.85	4.83	4.09	4.7	4.98	7.65	5.7	8.54	8.04	5.64
Merged-chr11-107511049-2	chr11	107510948	107511148	+	664.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31520.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	2.42	6.54	2.28	2.82	7.77	9.41	8.64	8.24	8.65	6.53	10.55	8.14
Merged-chr11-57519510-3	chr11	57519412	57519612	+	664.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	847.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	6.86	7.8	10.84	2.82	4.09	5.33	8.97	10.18	9.24	19.58	9.55	7.21
Merged-chrX-106165261-3	chrX	106165161	106165361	+	664.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-21839.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	7.27	9.06	13.69	4.02	15.96	10.98	1.66	6.73	10.03	9.04	16.08	8.14
Merged-chr7-112514697-1	chr7	112514597	112514797	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020606, intron 1 of 12)	intron (NM_020606, intron 1 of 12)	20986.0	NR_154466	102636183.0	Mm.446701	NR_154466		Parvaos	A230071N21Rik	parvin, alpha, opposite strand	ncRNA	1.62	4.02	4.56	3.62	2.05	0.94	1.99	2.55	8.46	8.03	13.06	8.46
Merged-chrX-48277485-1	chrX	48277385	48277585	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028276, exon 12 of 15)	exon (NM_028276, exon 12 of 15)	7941.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	1.62	1.51	1.14	3.22	6.95	4.7	2.99	5.89	6.29	5.52	1.0	2.51
Merged-chr11-79610346-1	chr11	79610246	79610446	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12817.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	1.62	3.27	0.0	2.01	7.36	0.63	3.32	5.19	2.95	4.02	3.01	1.57
Merged-chr3-107105132-1	chr3	107105032	107105232	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008417, exon 3 of 3)	exon (NM_008417, exon 3 of 3)	3565.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	0.0	2.28	2.82	5.73	1.25	2.33	4.96	6.29	8.54	2.51	5.33
Merged-chr10-60373086-1	chr10	60372986	60373186	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001159572)	TTS (NM_001159572)	26235.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	2.02	2.01	3.42	1.61	2.86	6.27	7.97	5.44	1.97	2.51	5.02	3.13
Merged-chr10-78305249-1	chr10	78305149	78305349	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	34958.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	2.42	2.01	2.28	6.84	0.82	6.59	1.99	4.88	0.98	4.52	4.52	2.82
Merged-chr13-37797767-1	chr13	37797667	37797867	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28271.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.06	1.76	11.41	5.23	5.32	5.33	3.65	7.6	1.18	0.0	0.0	0.0
Merged-chr11-11776039-1	chr11	11775939	11776139	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32923.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.21	1.51	1.71	2.41	0.82	4.08	5.31	2.52	4.33	1.51	6.03	5.95
Merged-chr5-149052583-1	chr5	149052483	149052683	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	474.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	10.9	12.32	10.84	14.08	9.0	9.09	7.31	10.88	13.57	12.55	12.56	7.83
Merged-chr3-28814598-1	chr3	28814498	28814698	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9090.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	10.09	8.3	6.85	2.82	5.73	13.8	3.65	4.71	7.67	7.53	8.04	2.51
Merged-chr13-112416605-2	chr13	112416505	112416705	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47465.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.04	3.77	11.41	7.64	6.55	4.7	5.31	6.76	9.64	5.52	5.02	6.89
Merged-chr10-78457177-1	chr10	78457077	78457277	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	7771.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.04	3.52	7.99	0.0	2.45	6.9	1.33	8.19	5.9	9.04	7.54	5.33
Merged-chr13-104931970-1	chr13	104931870	104932070	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68077.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	6.06	3.27	3.99	2.41	0.82	2.51	4.98	5.75	1.38	2.01	0.5	2.19
Merged-chr13-92733523-1	chr13	92733423	92733623	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61295.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	3.23	6.04	2.28	5.63	6.14	2.2	3.32	5.75	4.13	3.51	10.55	7.52
Merged-chr11-80170420-1	chr11	80170320	80170520	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-13452.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.85	7.55	3.42	3.62	3.27	4.39	2.66	1.46	10.03	9.54	5.02	7.52
Merged-chr2-148597139-1	chr2	148597039	148597239	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-75476.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.85	2.26	2.28	1.21	2.45	4.7	6.64	5.75	3.34	7.03	10.05	5.01
Merged-chr1-91252587-1	chr1	91252487	91252687	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	2021.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	12.11	5.28	2.85	5.23	9.41	3.76	5.31	6.25	9.05	10.54	4.02	5.95
Merged-chr1-54910967-1	chr1	54910867	54911067	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	15420.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.83	3.27	2.85	5.63	9.0	4.7	3.32	5.64	3.93	5.02	2.01	2.82
Merged-chr18-60202325-1	chr18	60202225	60202425	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9752.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	5.25	1.76	7.99	0.8	6.55	6.59	2.99	7.09	12.19	4.02	5.02	4.7
Merged-chr18-60810175-1	chr18	60810075	60810275	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 5 of 8)	intron (NM_001042605, intron 5 of 8)	-1901.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	5.25	6.79	2.28	2.41	0.41	0.63	1.99	0.56	9.83	9.04	9.04	6.89
Merged-chr5-99235745-1	chr5	99235645	99235845	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17182.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.44	3.02	0.0	0.0	9.0	10.66	3.32	1.74	6.29	7.03	2.51	1.25
Merged-chr11-115160180-2	chr11	115160059	115160259	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021411, intron 6 of 8)	intron (NM_021411, intron 6 of 8)	-3182.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	11.71	6.54	5.7	2.41	2.86	6.9	4.32	6.81	6.69	13.05	4.02	7.83
Merged-chr15-57859488-1	chr15	57859388	57859588	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32930.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.23	1.01	1.14	0.8	6.55	1.57	0.66	4.43	3.93	4.02	3.52	0.94
Merged-chr2-4509408-1	chr2	4509308	4509508	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-50346.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.46	4.53	2.28	5.23	7.36	2.82	2.99	1.74	9.83	8.54	2.01	2.51
Merged-chr3-68662586-1	chr3	68662486	68662686	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28058.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	3.23	6.54	3.42	6.03	3.27	5.96	8.64	5.89	5.31	1.51	10.05	6.27
Merged-chr3-51373156-1	chr3	51373056	51373256	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	23391.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	4.85	8.55	5.7	3.22	6.55	3.76	5.31	5.33	5.7	2.01	7.03	2.19
Merged-chr18-12062638-1	chr18	12062538	12062738	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178801, intron 10 of 14)	intron (NM_178801, intron 10 of 14)	58899.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	7.27	5.79	12.55	9.65	0.82	0.31	0.0	0.17	0.0	0.0	1.0	1.25
Merged-chr11-121703876-1	chr11	121703776	121703976	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1449.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	11.31	6.79	9.13	6.03	4.5	8.47	7.64	5.55	9.83	5.52	15.58	6.58
Merged-chr12-112876526-1	chr12	112876426	112876626	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15610.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	7.67	8.8	0.57	2.41	0.82	0.31	2.99	2.33	3.34	5.52	3.52	3.13
Merged-chr11-22848752-1	chr11	22848652	22848852	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	10983.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.81	3.52	0.0	5.63	6.55	3.76	1.99	5.47	6.88	5.02	4.02	1.57
Merged-chr7-73556814-1	chr7	73556714	73556914	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	1581.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	6.46	2.77	5.7	2.41	2.86	6.27	2.66	2.55	11.41	10.04	12.56	8.77
Merged-chr2-45063639-1	chr2	45063539	45063739	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-40462.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.25	2.01	0.0	1.21	3.68	5.64	6.98	5.44	4.33	4.02	1.51	3.45
Merged-chr14-47087462-1	chr14	47087362	47087562	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 9 of 12)	MIRb|SINE|MIR	18485.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.65	6.04	3.99	2.01	7.36	8.15	4.98	7.18	6.1	1.51	6.53	4.39
Merged-chr2-150678573-2	chr2	150678492	150678692	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10352.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	4.04	3.77	7.99	12.87	10.23	8.15	4.32	7.88	11.6	16.57	9.04	5.95
Merged-chr11-5737337-2	chr11	5737247	5737447	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	3829.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.85	4.02	0.0	3.22	2.86	13.8	6.64	5.24	16.33	9.04	8.54	3.45
Merged-chr10-34199792-1	chr10	34199692	34199892	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	7759.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	2.42	4.53	3.42	10.86	11.05	8.78	7.31	5.97	9.44	1.51	5.53	7.83
Merged-chr18-80777664-1	chr18	80777564	80777764	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015805, intron 14 of 28)	intron (NM_015805, intron 14 of 28)	-64593.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	2.83	0.25	2.85	2.01	1.23	2.2	6.64	4.71	0.98	1.0	2.51	1.88
Merged-chr4-103346273-1	chr4	103346173	103346373	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	32427.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	6.06	5.53	2.85	6.84	12.27	2.2	5.98	5.1	6.1	4.02	3.52	7.83
Merged-chr2-120730959-1	chr2	120730859	120731059	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026891, exon 2 of 28)	exon (NM_026891, exon 2 of 28)	558.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	3.23	3.52	3.42	7.64	2.05	3.45	1.66	8.8	8.06	8.03	5.02	6.58
Merged-chr10-76835924-1	chr10	76835824	76836024	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347216, intron 2 of 15)	intron (NM_001347216, intron 2 of 15)	-13112.0	NR_152849	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	3.63	5.28	1.14	8.85	3.68	4.7	9.3	5.89	2.56	3.51	2.51	4.39
Merged-chr4-45820234-1	chr4	45820134	45820334	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	6593.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	3.63	6.04	3.99	2.41	2.86	6.59	0.33	5.24	8.85	8.54	8.04	0.94
Merged-chr11-107241924-1	chr11	107241824	107242024	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 6 of 9)	MTE2b|LTR|ERVL-MaLR	-52543.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.02	3.02	1.71	5.63	7.36	3.76	2.99	5.05	3.74	5.52	2.51	2.82
Merged-chr14-47541471-1	chr14	47541371	47541571	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26963.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	3.23	1.26	7.42	2.41	0.82	5.02	3.65	5.66	1.18	3.01	12.06	5.64
Merged-chr8-95014313-1	chr8	95014213	95014413	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001198894)	TTS (NM_001198894)	-3379.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	1.62	0.25	0.0	1.61	4.09	2.82	4.98	10.77	7.47	2.01	11.56	5.95
Merged-chr4-21712403-1	chr4	21712303	21712503	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21A|LTR|ERV1	-15298.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	1.21	5.53	2.85	2.41	4.09	5.96	5.98	6.45	4.33	13.56	8.54	7.21
Merged-chr10-120954516-1	chr10	120954416	120954616	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081193, intron 1 of 12)	intron (NM_001081193, intron 1 of 12)	24814.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	1.62	3.02	3.42	4.42	6.95	6.27	0.33	5.61	3.54	1.51	5.53	2.82
Merged-chr6-140712996-1	chr6	140712896	140713096	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86111.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.23	8.3	5.7	8.04	3.27	7.84	6.64	6.81	6.1	7.03	8.04	3.76
Merged-chr11-20794374-1	chr11	20794274	20794474	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36734.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.63	10.31	7.99	0.8	7.77	5.33	2.33	5.66	7.08	8.03	2.01	3.76
Merged-chr14-70833974-1	chr14	70833874	70834074	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18959.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	0.0	0.5	0.0	0.8	0.0	0.0	0.0	0.0	7.47	9.54	13.06	8.46
Merged-chr11-46449049-1	chr11	46448949	46449149	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5882.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	2.83	3.27	1.14	1.61	3.27	5.96	1.33	5.66	4.72	4.52	3.01	1.25
Merged-chr9-111608931-2	chr9	111608835	111609035	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	81413.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	5.25	2.52	2.28	5.23	5.73	4.39	4.65	4.23	9.05	16.07	14.07	7.83
Merged-chr9-106171621-1	chr9	106171521	106171721	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	692.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	8.88	5.28	3.99	5.23	5.32	9.41	5.98	5.16	8.46	2.01	5.53	6.58
Merged-chr10-17951024-3	chr10	17950912	17951112	+	663.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2945.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	12.11	7.29	9.13	4.42	7.36	5.64	5.65	4.4	16.13	9.54	15.07	4.07
Merged-chr15-83435482-2	chr15	83435382	83435582	+	663.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-2632.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	9.69	7.29	5.7	3.62	12.68	7.21	5.65	15.59	10.82	5.02	9.04	1.88
Merged-chrX-106151409-2	chrX	106151312	106151512	+	663.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	8137.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	6.86	2.52	3.99	4.02	12.27	8.78	7.97	16.23	9.83	7.53	3.52	6.58
Merged-chr10-61176018-2	chr10	61175930	61176130	+	663.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017407, intron 2 of 3)	intron (NM_001017407, intron 2 of 3)	768.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	8.48	8.55	9.7	3.62	2.86	8.15	3.32	4.63	9.05	6.03	15.58	8.46
Merged-chr1-107516071-2	chr1	107515978	107516178	+	663.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011111, intron 2 of 7)	intron (NM_011111, intron 2 of 7)	4568.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.85	3.52	2.28	7.64	6.14	8.15	4.98	7.51	8.46	5.02	9.55	4.07
Merged-chr4-154968115-2	chr4	154967987	154968187	+	663.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172990, intron 1 of 18)	L1MA4|LINE|L1	3964.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	6.86	7.29	2.28	1.21	2.86	1.57	2.99	3.7	8.85	7.53	13.06	6.89
Merged-chr6-125600340-3	chr6	125600254	125600454	+	663.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 12 of 51)	intron (NM_011708, intron 12 of 51)	47406.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	6.06	9.56	2.85	8.85	8.59	2.82	2.33	6.03	11.41	9.54	9.04	10.34
Merged-chr3-106546212-3	chr3	106546113	106546313	+	663.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1412.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	7.27	5.28	9.13	7.64	5.32	6.9	2.66	9.81	14.95	12.55	13.06	7.52
Merged-chr7-114190932-3	chr7	114190851	114191051	+	663.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63729.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	8.08	8.55	6.85	4.42	4.09	7.84	5.31	5.78	6.49	11.55	11.56	13.16
Merged-chr13-118538924-1	chr13	118538824	118539024	+	663.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17244.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	4.44	0.25	4.56	0.0	1.64	0.94	0.0	1.91	12.59	17.57	17.08	6.89
Merged-chr1-161329416-2	chr1	161329320	161329520	+	663.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66018.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	8.88	9.81	18.25	15.69	2.45	1.25	5.98	4.49	11.41	10.54	9.55	6.27
Merged-chr2-70742769-2	chr2	70742662	70742862	+	663.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172664, intron 10 of 19)	L2b|LINE|L2	81253.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	2.02	4.02	3.42	4.02	8.18	5.02	5.98	11.1	9.64	4.52	6.03	6.27
Merged-chr11-46808486-2	chr11	46808390	46808590	+	663.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2309.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.86	3.52	14.83	2.41	6.14	13.17	5.31	5.83	13.57	9.04	3.52	2.82
Merged-chr19-11824578-2	chr19	11824478	11824678	+	663.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4446.0	NM_146936	258938.0	Mm.451671	NM_146936	ENSMUSG00000048292	Olfr1417	MOR266-2	olfactory receptor 1417	protein-coding	8.08	6.29	2.28	8.85	13.91	12.23	7.31	3.17	6.1	4.52	2.01	2.82
Merged-chr2-84645666-2	chr2	84645599	84645799	+	663.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	3781.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	2.83	3.52	9.7	16.49	4.5	7.84	5.31	3.87	4.92	5.52	3.52	2.82
Merged-chr8-105991040-3	chr8	105990948	105991148	+	663.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176913, intron 1 of 11)	intron (NM_176913, intron 1 of 11)	725.0	NM_001301204	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	12.92	5.03	11.41	0.8	7.77	8.47	7.97	7.26	10.82	12.55	12.56	18.48
Merged-chr5-52461860-3	chr5	52461780	52461980	+	663.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 1 of 11)	URR1B|DNA|hAT-Charlie	9663.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	4.44	4.28	10.27	11.26	9.0	10.35	11.63	6.73	7.87	6.53	6.53	5.95
Merged-chr17-25476114-1	chr17	25476014	25476214	+	663.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027951, intron 5 of 5)	intron (NM_027951, intron 5 of 5)	4524.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	18.17	7.8	5.7	5.63	3.68	11.29	9.97	6.9	15.93	5.52	8.54	3.45
Merged-chr1-45824622-3	chr1	45824545	45824745	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	29479.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	7.67	2.52	15.4	10.05	16.77	6.59	6.31	26.33	7.28	5.52	15.07	5.33
Merged-chr15-86167232-1	chr15	86167132	86167332	+	663.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-18496.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	2.01	0.57	0.0	5.32	6.27	6.31	5.36	8.65	5.02	3.52	6.27
Merged-chr1-153559429-3	chr1	153559333	153559533	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9719.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	8.48	9.31	3.99	3.22	9.0	8.78	2.66	5.16	12.0	10.04	10.55	7.83
Merged-chr2-5682184-3	chr2	5682094	5682294	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MER21C|LTR|ERVL	-6148.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.23	3.77	6.85	10.46	7.36	4.39	6.64	9.87	7.28	5.52	10.55	5.95
Merged-chr4-133592812-1	chr4	133592712	133592912	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8439.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	10.09	7.04	3.99	12.47	4.09	3.14	3.32	4.18	6.69	6.03	8.54	2.51
Merged-chr5-137837320-2	chr5	137837246	137837446	+	663.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1068.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	2.83	1.51	3.42	4.02	8.18	7.84	6.64	5.3	11.41	6.03	8.04	6.58
Merged-chr9-108726284-3	chr9	108726172	108726372	+	663.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 4 of 10)	L1MA5|LINE|L1	34129.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.44	4.78	10.84	16.09	7.36	3.76	4.98	12.93	6.69	9.54	11.56	9.4
Merged-chr19-18619844-1	chr19	18619744	18619944	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11969.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.86	6.79	1.71	1.61	8.18	7.53	10.63	6.79	5.51	2.51	4.52	5.01
Merged-chr1-128548891-2	chr1	128548788	128548988	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	43411.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	10.5	6.29	2.28	3.22	4.09	6.9	3.32	2.92	14.16	16.57	15.07	2.82
Merged-chr9-66895852-2	chr9	66895763	66895963	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23842.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	11.71	7.29	6.28	1.61	16.77	9.09	0.66	4.93	8.65	7.53	9.04	5.33
Merged-chr14-34570506-1	chr14	34570406	34570606	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039073, intron 6 of 14)	intron (NM_001039073, intron 6 of 14)	18101.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	1.62	1.01	0.0	4.02	7.36	5.96	0.66	7.37	8.46	5.02	3.52	4.7
Merged-chr4-152173233-2	chr4	152173135	152173335	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4865.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	10.5	1.76	10.27	5.63	5.73	9.09	3.99	7.18	12.59	7.03	9.04	7.52
Merged-chr11-116198337-1	chr11	116198237	116198437	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	-518.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	4.04	3.02	3.42	2.01	6.14	4.08	6.31	5.38	4.72	5.52	1.0	3.45
Merged-chr2-4889695-2	chr2	4889597	4889797	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	8133.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	11.71	7.8	6.85	6.84	14.32	5.64	8.97	8.27	9.64	4.02	18.09	8.14
Merged-chr2-31162270-1	chr2	31162170	31162370	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	9954.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	3.23	7.55	6.85	3.22	7.36	5.96	3.65	5.64	4.13	2.01	8.04	3.13
Merged-chr11-77368933-1	chr11	77368833	77369033	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	20653.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	8.08	2.01	7.99	3.22	8.18	6.27	2.66	7.68	5.7	7.03	3.52	3.76
Merged-chr3-148279216-1	chr3	148279116	148279316	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	675419.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.04	2.52	2.28	4.02	7.77	3.14	5.31	6.31	2.56	1.51	14.07	5.33
Merged-chr13-49421661-2	chr13	49421534	49421734	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	20.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	6.86	10.82	0.0	6.84	11.45	7.21	3.99	4.21	4.52	7.53	14.07	2.82
Merged-chr10-8844130-1	chr10	8844030	8844230	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	RMER20B|LTR|ERVK	41940.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.42	2.26	2.28	4.83	9.0	6.9	1.66	5.58	2.36	4.02	0.0	1.88
Merged-chr4-122849513-2	chr4	122849397	122849597	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13270.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	2.42	4.78	0.0	4.42	10.64	7.21	4.32	6.95	11.8	4.52	6.03	6.58
Merged-chr8-72244827-1	chr8	72244727	72244927	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007456, intron 1 of 11)	intron (NM_007456, intron 1 of 11)	4809.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	2.02	4.02	8.56	4.02	6.95	6.9	2.66	11.64	1.18	1.51	3.52	6.89
Merged-chr4-40757251-2	chr4	40757161	40757361	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021535, intron 1 of 11)	intron (NM_021535, intron 1 of 11)	624.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.04	3.27	2.85	0.4	6.14	10.66	5.31	4.88	12.0	8.54	9.04	8.14
Merged-chr6-117496600-2	chr6	117496498	117496698	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152214, intron 2 of 2)	intron (NR_152214, intron 2 of 2)	1363.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	2.42	3.52	7.99	4.42	4.91	5.96	2.33	7.12	9.05	7.03	4.02	7.83
Merged-chr17-62458997-1	chr17	62458897	62459097	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	422320.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.04	2.01	9.13	2.41	0.82	8.47	6.31	6.56	5.7	3.51	2.51	2.82
Merged-chr15-76806014-3	chr15	76805925	76806125	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	L1M4|LINE|L1	12145.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	7.27	8.8	10.27	5.23	5.32	8.47	7.97	7.6	9.24	9.54	5.02	5.01
Merged-chr10-42487076-2	chr10	42486980	42487180	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8515.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	4.04	2.77	6.28	6.03	3.27	5.64	1.0	5.52	5.9	10.04	14.57	5.95
Merged-chr4-33303223-1	chr4	33303123	33303323	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-7088.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.65	7.55	3.42	5.23	3.27	6.9	4.98	5.33	6.49	8.03	10.55	5.01
Merged-chr8-84391034-1	chr8	84390934	84391134	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-24330.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.62	2.01	1.14	2.82	4.91	5.96	1.99	6.53	0.0	0.0	2.01	0.63
Merged-chr17-43166334-1	chr17	43166234	43166434	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8043.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	3.23	3.77	2.28	10.05	6.95	5.96	1.66	10.26	1.38	1.0	3.52	0.94
Merged-chr17-72945428-1	chr17	72945328	72945528	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	27123.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.5	0.0	0.8	4.5	5.96	6.31	5.33	4.33	0.5	6.53	2.19
Merged-chr11-75563956-1	chr11	75563856	75564056	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12527.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	2.42	4.53	1.71	1.61	9.0	10.35	6.98	5.61	9.64	6.53	5.53	6.58
Merged-chr1-75477422-2	chr1	75477375	75477575	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001001566, exon 2 of 4)	exon (NM_001001566, exon 2 of 4)	1996.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	5.65	5.28	2.85	2.01	8.18	5.33	3.32	2.27	1.77	9.04	5.53	14.1
Merged-chr18-50081434-2	chr18	50081312	50081512	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	Lx7|LINE|L1	-27750.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	6.46	4.02	1.71	3.22	18.0	8.78	5.31	4.57	13.18	15.06	10.05	10.65
Merged-chr2-12059676-2	chr2	12059561	12059761	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-241585.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	5.25	3.77	11.41	9.65	0.82	5.02	8.3	6.28	8.06	13.05	3.01	3.45
Merged-chrX-134308698-2	chrX	134308599	134308799	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145924, intron 2 of 22)	intron (NM_145924, intron 2 of 22)	615.0	NM_001305631	102920.0	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	5.65	5.53	6.85	5.63	9.82	6.59	2.33	5.61	9.64	2.01	7.54	9.4
Merged-chr6-71149693-1	chr6	71149593	71149793	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5313.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	8.48	4.28	13.69	4.02	7.77	7.53	5.31	4.46	7.08	4.02	8.04	3.76
Merged-chr3-57740061-2	chr3	57739954	57740154	+	663.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	3997.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.63	1.76	9.13	6.44	7.77	6.27	10.63	19.82	13.77	11.55	20.1	4.07
Merged-chr4-130896593-2	chr4	130896503	130896703	+	663.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16731.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	12.11	4.53	7.42	2.41	7.77	2.51	4.65	4.35	14.36	13.56	15.07	7.83
Merged-chr10-94526017-3	chr10	94525912	94526112	+	663.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	Tigger5|DNA|TcMar-Tigger	11155.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.86	9.31	8.56	8.04	5.73	4.39	1.33	5.36	9.24	3.01	12.06	0.94
Merged-chr2-170195720-1	chr2	170195620	170195820	+	663.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.23	4.78	3.42	4.42	6.95	7.84	5.31	5.36	2.95	3.51	4.02	3.13
Merged-chr12-3856910-1	chr12	3856810	3857010	+	663.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	5334.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.06	3.02	3.99	2.01	7.77	6.59	3.32	5.64	1.77	3.51	10.05	7.52
Merged-chr15-83097824-3	chr15	83097731	83097931	+	663.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2374.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	6.86	9.06	5.7	5.63	6.55	10.98	1.66	4.04	21.05	22.09	15.07	4.39
Merged-chr5-44218710-1	chr5	44218610	44218810	+	663.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	7896.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	8.88	10.56	9.13	10.05	0.82	1.25	2.66	3.31	3.54	1.51	13.57	3.76
Merged-chr12-111038494-3	chr12	111038397	111038597	+	663.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1301.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	8.48	12.07	5.13	5.63	9.41	5.64	7.31	5.07	10.03	10.54	6.53	14.72
Merged-chr9-47652727-3	chr9	47652625	47652825	+	663.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122373.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.27	7.04	27.38	12.87	14.32	10.98	6.98	15.06	9.83	9.04	7.03	10.34
Merged-chr2-27426042-2	chr2	27425942	27426142	+	663.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	CpG	1566.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	8.88	4.53	1.14	10.05	2.45	5.33	7.31	5.52	7.08	4.02	7.54	5.33
Merged-chr2-69822990-1	chr2	69822890	69823090	+	663.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360394, intron 1 of 3)	CpG	149.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	8.88	5.03	3.42	2.01	6.14	5.96	6.98	7.71	5.9	1.0	2.51	3.13
Merged-chr4-148607981-2	chr4	148607866	148608066	+	663.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001003893, exon 7 of 11)	exon (NM_001003893, exon 7 of 11)	5422.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	3.23	2.26	7.42	2.82	4.91	5.64	2.99	7.91	11.01	5.52	10.05	6.58
Merged-chr1-43804345-3	chr1	43804242	43804442	+	663.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 4 of 14)	Lx8|LINE|L1	23366.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	11.31	7.29	3.99	2.41	7.77	5.64	7.31	8.27	9.24	8.54	7.54	5.33
Merged-chr4-133905377-2	chr4	133905276	133905476	+	663.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17579.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.02	3.77	10.27	7.24	6.14	9.41	3.99	8.58	6.69	5.02	11.05	8.77
Merged-chr19-40343197-1	chr19	40343097	40343297	+	663.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034963, intron 12 of 22)	Tigger16a|DNA|TcMar-Tigger	59113.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	5.25	4.78	2.85	4.42	9.0	8.15	8.64	7.6	7.28	10.04	5.02	6.58
Merged-chr13-28688008-3	chr13	28687886	28688086	+	663.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 3 of 7)	intron (NR_045054, intron 3 of 7)	22887.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	5.65	6.54	5.7	17.29	29.05	7.21	10.3	24.95	5.31	6.03	9.04	5.01
Merged-chr5-117089386-2	chr5	117089306	117089506	+	663.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26587.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	7.67	7.55	10.27	2.01	6.55	6.59	4.65	9.42	7.47	6.03	12.06	2.82
Merged-chr8-109014934-2	chr8	109014820	109015020	+	663.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-60302.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	6.06	4.02	6.28	5.23	8.18	9.72	1.33	5.24	10.23	4.52	9.55	6.89
Merged-chr2-48988205-2	chr2	48988126	48988326	+	663.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-37992.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.81	2.01	3.42	4.02	11.86	3.45	8.3	10.21	4.52	7.03	11.05	5.95
Merged-chr12-110418993-3	chr12	110418951	110419151	+	663.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-28128.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.44	7.55	2.85	6.44	4.5	8.47	8.3	2.58	4.33	5.02	6.03	7.52
Merged-chr7-30324301-1	chr7	30324201	30324401	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-1926.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	3.63	0.75	1.14	2.41	3.27	2.82	0.33	1.57	13.18	16.57	10.55	3.76
Merged-chr19-53421927-1	chr19	53421827	53422027	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31293.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.85	4.53	5.7	4.02	6.55	7.53	5.98	6.98	2.95	2.51	3.52	1.25
Merged-chr11-111954947-1	chr11	111954847	111955047	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	756409.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.0	0.0	0.0	0.0	5.73	6.9	2.99	5.3	0.0	0.0	0.0	0.0
Merged-chr18-34781261-2	chr18	34781158	34781358	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	4250.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	9.69	8.3	19.97	4.83	4.5	5.64	3.32	8.78	6.49	3.01	10.55	5.64
Merged-chr4-86823361-1	chr4	86823261	86823461	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_184088, intron 21 of 31)	B3|SINE|B2	34006.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	5.65	7.55	2.28	4.02	3.27	8.15	0.66	5.3	13.77	8.54	6.03	6.27
Merged-chr12-32730946-1	chr12	32730846	32731046	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89389.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.4	1.01	1.14	0.4	0.0	4.7	3.99	5.3	2.56	1.0	1.51	3.13
Merged-chr12-32431190-1	chr12	32431090	32431290	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	52401.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.81	0.75	1.14	0.0	0.0	0.0	0.0	1.12	6.29	12.55	15.07	4.39
Merged-chr8-11456133-1	chr8	11456033	11456233	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	-21796.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.81	2.52	5.13	2.82	4.09	7.21	5.65	6.34	7.47	6.53	4.52	7.21
Merged-chr11-5974306-1	chr11	5974206	5974406	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001174054, intron 17 of 20)	intron (NM_001174054, intron 17 of 20)	18548.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	10.5	7.55	6.28	5.63	2.05	0.31	1.33	0.95	6.1	3.51	6.53	8.77
Merged-chr11-88864113-1	chr11	88864013	88864213	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126433, intron 3 of 4)	CpG	473.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	4.04	7.04	3.99	1.21	4.09	7.53	3.32	3.34	2.95	1.0	5.02	2.51
Merged-chr6-124445724-1	chr6	124445624	124445824	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	17020.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	1.21	4.28	2.85	4.83	5.73	7.21	4.98	7.71	5.7	11.05	7.54	3.76
Merged-chr10-34190688-1	chr10	34190588	34190788	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	16863.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	2.02	2.26	3.42	0.8	4.91	2.51	4.65	4.01	3.93	5.02	8.54	1.25
Merged-chr1-152403084-1	chr1	152402984	152403184	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	3217.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	1.62	1.51	13.12	10.05	0.82	2.2	0.66	5.55	1.97	3.01	3.01	3.13
Merged-chr5-105844529-1	chr5	105844429	105844629	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32039.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	8.88	2.26	5.7	4.42	3.68	5.33	2.99	6.25	2.16	5.02	5.53	5.33
Merged-chr17-56139981-1	chr17	56139881	56140081	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130456, intron 1 of 16)	CpG	362.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	5.65	5.28	5.7	6.44	2.45	4.39	4.65	3.06	11.21	8.54	5.53	4.07
Merged-chr3-101779094-1	chr3	101778994	101779194	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	57129.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	2.83	2.01	2.85	7.24	7.36	6.27	1.33	6.36	3.15	4.52	9.55	2.51
Merged-chr15-63978196-1	chr15	63978096	63978296	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	MTC|LTR|ERVL-MaLR	19870.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.81	1.01	4.56	2.41	0.82	6.59	3.99	5.5	2.95	6.03	6.03	2.51
Merged-chr8-122369774-1	chr8	122369674	122369874	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6835.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	3.23	3.77	4.56	1.61	4.91	2.51	1.33	3.98	4.33	3.01	6.53	1.88
Merged-chr8-68391428-1	chr8	68391328	68391528	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	22969.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	2.83	0.0	0.0	2.82	3.68	1.57	4.65	4.96	5.31	6.53	3.01	1.25
Merged-chr5-65491914-3	chr5	65491786	65491986	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	949.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	7.67	5.53	2.28	8.04	7.36	6.27	5.65	5.55	14.16	5.52	9.55	7.21
Merged-chr7-38124270-2	chr7	38124171	38124371	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-16781.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	1.62	7.04	9.13	17.29	14.32	7.53	5.31	7.32	1.18	0.5	0.5	0.31
Merged-chr10-59748989-1	chr10	59748889	59749089	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359267, intron 4 of 11)	L1MEf|LINE|L1	46426.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	1.62	1.76	2.28	0.8	5.73	3.45	5.31	5.86	2.95	2.01	3.52	1.88
Merged-chr4-143216465-1	chr4	143216365	143216565	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-3756.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	3.63	6.04	6.85	9.65	7.36	3.14	1.33	7.32	6.88	4.52	8.54	4.07
Merged-chr2-5793063-1	chr2	5792963	5793163	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51971.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	1.62	1.76	5.7	1.61	2.45	3.45	3.65	5.94	1.97	0.5	4.52	1.88
Merged-chr2-78419094-1	chr2	78418994	78419194	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181547.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0.0	1.01	1.14	0.8	0.0	3.76	4.32	4.93	5.7	1.51	3.01	1.25
Merged-chr8-56430311-1	chr8	56430211	56430411	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	54657.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	1.62	0.5	3.42	0.8	9.41	3.14	5.31	5.24	7.08	4.02	2.51	1.25
Merged-chr11-67564862-1	chr11	67564762	67564962	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-21638.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.62	2.26	2.28	3.22	0.0	0.31	3.99	1.51	12.19	4.52	11.56	2.51
Merged-chr11-48856208-2	chr11	48856063	48856263	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15257.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	9.69	5.79	7.99	5.63	8.59	12.86	3.99	5.69	16.33	11.55	11.05	5.95
Merged-chr18-38890415-1	chr18	38890315	38890515	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010197, intron 1 of 3)	intron (NM_010197, intron 1 of 3)	-2041.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	6.06	1.26	5.7	0.4	4.09	2.2	2.66	5.13	3.74	3.01	4.02	0.63
Merged-chr2-158410444-1	chr2	158410344	158410544	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291137, intron 1 of 30)	CpG	591.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	2.42	5.28	7.99	4.83	2.45	1.88	8.3	6.08	6.49	2.01	6.53	4.7
Merged-chr3-116483899-1	chr3	116483799	116483999	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24276.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	11.31	5.03	11.41	8.04	2.45	10.98	5.98	4.71	7.28	3.01	7.54	2.51
Merged-chr2-167345219-2	chr2	167345130	167345330	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	3948.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	2.42	5.03	5.13	5.23	13.09	8.78	4.98	3.95	9.05	10.04	4.02	10.34
Merged-chr16-9515913-2	chr16	9515825	9516025	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	476608.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.81	1.01	0.0	3.22	9.82	3.76	2.66	7.23	4.13	9.54	14.57	1.25
Merged-chr10-83359082-1	chr10	83358982	83359182	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1139.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	2.02	3.52	11.41	4.02	2.86	7.84	3.32	5.47	7.67	6.03	15.58	5.95
Merged-chr19-4214122-1	chr19	4214022	4214222	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310038)	promoter-TSS (NM_001310038)	-116.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	9.29	13.08	2.85	3.62	6.14	4.39	2.99	4.77	10.03	12.05	2.01	5.95
Merged-chr6-17558132-1	chr6	17558032	17558232	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 17 of 21)	intron (NM_008591, intron 17 of 21)	-78878.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.63	3.52	0.0	2.41	0.82	6.59	4.65	6.87	0.0	0.0	0.0	0.31
Merged-chr10-78143963-1	chr10	78143863	78144063	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25805.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.63	9.06	10.27	6.44	2.45	7.53	3.99	4.57	8.06	10.04	5.02	10.34
Merged-chr13-52275882-2	chr13	52275779	52275979	+	662.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	179138.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	8.08	5.03	4.56	4.42	6.55	7.53	8.64	5.97	9.83	13.05	15.58	10.34
Merged-chr11-40693697-3	chr11	40693612	40693812	+	662.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	-1030.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	6.06	9.31	6.85	7.64	2.45	4.39	3.99	8.21	8.06	14.06	8.04	7.52
Merged-chr7-100533869-3	chr7	100533772	100533972	+	662.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3228.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.67	8.55	5.13	0.8	9.82	10.66	1.66	4.99	13.57	9.54	5.53	3.76
Merged-chr11-61142459-3	chr11	61142362	61142562	+	662.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021349, intron 2 of 3)	intron (NM_021349, intron 2 of 3)	1627.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	7.27	7.55	4.56	8.85	9.0	14.11	3.99	11.02	7.08	2.01	11.05	3.13
Merged-chr12-80014524-3	chr12	80014437	80014637	+	662.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78273.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.67	5.03	1.71	4.02	5.73	14.11	4.98	10.93	2.56	7.53	13.57	11.59
Merged-chr7-102223830-2	chr7	102223690	102223890	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111938, intron 2 of 4)	PB1D10|SINE|Alu	762.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	1.62	4.53	1.14	4.02	2.05	4.08	0.66	4.04	3.54	15.06	4.52	4.7
Merged-chr17-34671657-2	chr17	34671556	34671756	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031176, exon 2 of 33)	exon (NM_031176, exon 2 of 33)	1121.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	6.06	4.28	7.42	4.42	0.0	9.72	2.99	5.58	4.33	7.53	6.03	7.83
Merged-chr14-31196145-1	chr14	31196045	31196245	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347583, intron 3 of 13)	B2_Mm2|SINE|B2	10681.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	4.85	5.79	2.85	3.62	11.86	5.96	3.65	4.77	7.87	4.52	19.09	8.14
Merged-chr11-51265321-2	chr11	51265256	51265456	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304744, intron 1 of 10)	intron (NM_001304744, intron 1 of 10)	-1694.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	11.71	4.53	2.28	6.03	2.45	3.45	0.66	4.21	8.65	4.52	4.52	5.01
Merged-chr15-97064258-1	chr15	97064158	97064358	+	662.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8302.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	2.42	2.52	2.28	3.22	6.55	5.96	5.65	8.1	4.13	4.02	14.57	4.07
Merged-chr16-92674964-1	chr16	92674864	92675064	+	662.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	MIR|SINE|MIR	22365.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	12.52	4.28	6.28	3.22	4.5	6.9	1.66	2.94	6.69	5.02	6.03	3.45
Merged-chrUn_JH584304-106828-1	chrUn_JH584304	106728	106928	+	662.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-47139.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	7.87	10.54	10.05	16.6
Merged-chr14-21854028-1	chr14	21853928	21854128	+	662.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5118.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	4.44	3.02	6.28	6.44	4.5	2.82	3.32	3.62	7.47	14.56	23.11	9.71
Merged-chr6-148621751-1	chr6	148621651	148621851	+	662.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.44	5.03	4.56	5.63	13.91	10.35	7.31	5.02	6.69	3.51	12.56	4.07
Merged-chr5-105405189-1	chr5	105405089	105405289	+	662.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10586.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	5.25	5.03	2.85	0.4	6.14	0.0	0.66	2.44	9.64	12.05	16.58	3.13
Merged-chr15-25635214-1	chr15	25635114	25635314	+	662.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	MTC|LTR|ERVL-MaLR	12664.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	11.71	3.02	11.98	12.47	4.09	6.9	1.33	2.19	3.34	3.51	5.02	2.82
Merged-chr11-103965720-2	chr11	103965620	103965820	+	662.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1005.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	11.31	5.28	15.97	10.05	1.23	4.08	1.33	3.39	2.95	4.52	12.56	8.46
Merged-chr11-44528664-2	chr11	44528580	44528780	+	662.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 2 of 5)	MTD|LTR|ERVL-MaLR	9303.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.86	5.03	1.71	3.22	4.91	5.64	7.31	4.15	5.9	9.04	7.03	4.39
Merged-chr12-3763309-2	chr12	3763212	3763412	+	662.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-43668.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.25	3.77	2.85	7.24	9.0	8.78	5.31	12.93	11.01	9.04	13.06	10.34
Merged-chr11-79528810-3	chr11	79528676	79528876	+	662.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1833.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	6.46	7.04	8.56	7.24	11.05	4.39	1.33	5.41	16.13	13.56	15.07	11.59
Merged-chr11-95507453-1	chr11	95507353	95507553	+	662.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7112.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	5.25	5.28	3.99	7.64	1.23	2.82	0.0	3.79	11.01	16.07	10.05	3.45
Merged-chr14-46145852-1	chr14	46145752	46145952	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61825.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.4	4.53	9.13	4.02	8.59	2.51	5.31	8.66	0.2	0.0	0.0	0.0
Merged-chr11-116282445-2	chr11	116282357	116282557	+	662.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010254, intron 1 of 1)	intron (NM_010254, intron 1 of 1)	1518.0	NM_010254	14428.0	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	11.31	3.52	23.96	6.44	2.45	1.88	4.32	5.94	4.72	2.51	7.03	3.45
Merged-chr1-55804118-2	chr1	55804009	55804209	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127132.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.04	4.28	13.12	5.63	0.82	6.27	3.32	7.49	8.06	3.01	8.04	3.45
Merged-chr7-24175088-2	chr7	24174999	24175199	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029933)	promoter-TSS (NM_001029933)	77.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	4.04	4.53	2.85	14.88	5.73	7.84	4.65	7.6	3.15	9.04	14.07	4.7
Merged-chr15-81301354-2	chr15	81301256	81301456	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49494.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	10.5	3.52	5.7	7.64	10.64	7.53	1.99	4.29	13.37	5.02	10.05	3.76
Merged-chr8-86920527-1	chr8	86920427	86920627	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35269.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.25	6.79	10.27	4.02	2.05	5.96	9.63	7.4	9.05	6.53	10.55	2.82
Merged-chr4-137469071-2	chr4	137468971	137469171	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008305, intron 1 of 96)	CpG	268.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	3.23	4.53	0.0	2.01	7.77	18.5	8.97	6.08	9.05	9.04	10.55	2.51
Merged-chr17-34915499-2	chr17	34915398	34915598	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023557, intron 1 of 20)	intron (NM_023557, intron 1 of 20)	1032.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	11.71	3.27	2.28	4.02	7.77	8.78	1.0	3.45	8.26	6.03	13.06	6.89
Merged-chr3-60617974-1	chr3	60617874	60618074	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253711, intron 6 of 7)	MIRb|SINE|MIR	116795.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.04	8.05	5.7	3.22	9.41	16.62	4.98	4.91	5.7	12.05	9.04	5.95
Merged-chr4-128796607-2	chr4	128796507	128796707	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	9505.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.65	4.02	3.42	0.8	6.14	6.59	3.65	6.2	8.26	5.02	8.04	5.33
Merged-chr16-14352266-2	chr16	14352160	14352360	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-9298.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.04	12.07	5.7	4.02	7.36	5.64	2.99	5.1	11.41	16.07	7.03	5.01
Merged-chr3-15160086-1	chr3	15159986	15160186	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172216.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.65	2.52	3.42	3.22	6.14	4.39	5.65	6.98	4.52	1.51	3.01	2.51
Merged-chrX-73798645-2	chrX	73798548	73798748	+	662.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290540, intron 1 of 5)	intron (NM_001290540, intron 1 of 5)	11625.0	NM_009279	20832.0	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|SSR-delta|TRAP-delta|Trap	signal sequence receptor, delta	protein-coding	12.92	3.27	13.69	5.63	5.73	10.03	3.65	5.83	6.1	10.04	10.05	5.33
Merged-chr16-57499588-2	chr16	57499473	57499673	+	662.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-49669.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.63	12.07	3.42	4.83	9.82	10.98	8.3	4.18	12.0	9.04	14.07	9.4
Merged-chr15-41831611-2	chr15	41831499	41831699	+	662.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	641.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	9.29	10.06	3.42	11.26	9.41	4.7	3.32	5.36	8.06	5.02	8.04	10.02
Merged-chr3-95657359-2	chr3	95657249	95657449	+	662.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1372.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.27	3.52	6.28	2.41	9.41	11.29	2.66	4.85	9.24	10.04	11.56	7.83
Merged-chr10-80822227-1	chr10	80822127	80822327	+	662.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4429.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	11.71	6.79	7.42	3.62	11.86	10.66	3.65	5.97	5.51	15.57	10.55	2.82
Merged-chr16-3236818-1	chr16	3236718	3236918	+	662.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-355580.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	9.29	3.52	2.28	11.66	5.32	1.25	4.32	3.48	5.31	3.01	1.51	6.27
Merged-chr3-87364830-3	chr3	87364717	87364917	+	662.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6936.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	9.69	1.76	11.98	9.65	6.14	6.27	13.62	6.36	11.41	6.53	13.57	13.78
Merged-chr15-80076462-1	chr15	80076362	80076562	+	662.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2117.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	6.46	6.54	3.42	2.01	9.0	7.53	5.98	5.44	1.38	0.0	1.0	2.82
Merged-chr1-62328966-1	chr1	62328866	62329066	+	662.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-192857.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	7.67	3.77	4.56	0.0	10.64	4.08	5.31	6.28	5.11	3.51	4.02	3.45
Merged-chr9-61389582-3	chr9	61389433	61389633	+	662.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	17167.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	8.48	11.82	9.7	7.64	8.59	5.64	4.65	8.72	5.11	10.04	5.53	11.9
Merged-chr13-21771641-1	chr13	21771541	21771741	+	662.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	8984.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0.81	1.01	1.14	0.8	0.0	3.76	3.65	0.42	8.85	11.55	13.57	6.58
Merged-chr1-136606014-2	chr1	136605916	136606116	+	662.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18885.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.81	6.29	2.28	5.63	6.95	9.72	4.32	13.37	7.08	10.04	20.1	6.58
Merged-chr13-43788564-2	chr13	43788456	43788656	+	662.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	3444.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	1.62	3.27	6.85	5.63	12.68	7.21	5.65	6.81	9.83	11.05	11.56	7.52
Merged-chr4-139337250-2	chr4	139337167	139337367	+	662.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15309.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	9.69	8.05	2.28	9.25	3.27	0.63	0.33	1.6	12.98	9.04	10.05	8.14
Merged-chr15-62389519-2	chr15	62389421	62389621	+	662.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170070.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.62	8.55	9.13	3.22	0.0	1.88	1.0	0.0	9.24	7.53	10.05	4.07
Merged-chr4-124752583-1	chr4	124752483	124752683	+	662.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008385, intron 7 of 23)	intron (NM_008385, intron 7 of 23)	-1229.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	4.44	3.02	18.25	3.62	8.18	6.9	7.64	7.51	7.67	7.03	11.05	13.47
Merged-chr11-89989160-2	chr11	89989080	89989280	+	662.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316372, intron 2 of 4)	intron (NM_001316372, intron 2 of 4)	13714.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	5.65	4.02	0.0	2.82	9.82	8.47	6.31	6.53	6.88	8.03	5.53	3.76
Merged-chr6-73367809-3	chr6	73367706	73367906	+	662.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101861.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	10.9	7.8	7.99	4.02	7.77	6.9	2.99	8.27	10.82	11.05	16.08	7.21
Merged-chr1-132298834-2	chr1	132298683	132298883	+	662.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144810, exon 1 of 5)	5' UTR (NM_144810, exon 1 of 5)	157.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	6.86	5.53	10.84	14.88	4.09	13.48	6.98	5.13	10.23	12.05	8.04	5.64
Merged-chr9-22151115-3	chr9	22151016	22151216	+	662.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-5730.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	6.06	6.79	15.4	4.83	7.36	7.53	4.98	6.28	13.57	7.03	15.07	10.34
Merged-chr4-8429205-1	chr4	8429105	8429305	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-106439.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.81	1.01	3.42	4.02	2.45	5.96	3.65	6.34	6.69	3.01	6.03	4.07
Merged-chr3-135681469-1	chr3	135681369	135681569	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	10078.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	1.62	2.77	4.56	4.83	1.64	4.08	5.65	6.95	5.31	5.52	6.03	3.76
Merged-chr9-118512838-1	chr9	118512738	118512938	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018748, intron 1 of 23)	intron (NM_018748, intron 1 of 23)	6520.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	2.42	0.75	1.71	0.8	6.14	7.21	2.99	4.21	6.29	12.55	9.55	3.13
Merged-chr17-5174671-2	chr17	5174632	5174832	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179658.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	8.88	2.52	2.28	2.41	3.27	3.45	6.31	3.48	8.06	5.52	5.02	7.52
Merged-chr5-144770809-2	chr5	144770711	144770911	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	2019.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	4.44	5.79	6.28	6.84	9.82	5.02	7.31	8.89	7.67	15.57	13.57	5.95
Merged-chr13-76304879-1	chr13	76304779	76304979	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80082.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.62	3.02	1.14	4.02	9.41	3.14	1.0	4.4	0.0	0.0	1.51	0.0
Merged-chr10-4338999-1	chr10	4338899	4339099	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	48476.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.04	5.28	2.28	3.22	9.0	8.47	2.99	6.7	0.79	2.01	5.02	1.57
Merged-chr2-60963061-1	chr2	60962961	60963161	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_020296, exon 1 of 14)	5' UTR (NM_020296, exon 1 of 14)	143.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.25	1.76	0.0	0.8	6.55	5.33	7.97	6.03	5.11	4.52	3.01	3.76
Merged-chr11-118178428-1	chr11	118178328	118178528	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	34314.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.63	2.77	5.13	2.01	6.14	4.08	1.99	7.12	4.72	1.0	3.01	3.76
Merged-chr10-42860706-1	chr10	42860606	42860806	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001359264, exon 1 of 8)	exon (NM_001359264, exon 1 of 8)	194.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	10.9	8.55	8.56	4.02	5.73	6.9	2.66	3.81	9.83	10.04	10.05	4.39
Merged-chr13-117203022-1	chr13	117202922	117203122	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-17551.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.23	3.27	0.0	1.21	2.05	5.33	6.98	4.29	6.69	3.01	6.53	4.39
Merged-chr2-114140894-1	chr2	114140794	114140994	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009702, exon 16 of 35)	exon (NM_009702, exon 16 of 35)	9676.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	4.04	3.77	7.99	8.04	2.45	2.2	4.65	10.46	0.59	0.0	0.0	0.63
Merged-chr7-24642655-1	chr7	24642555	24642755	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	6085.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	4.04	7.04	3.42	6.44	10.23	3.45	1.99	5.47	7.47	5.02	5.02	7.52
Merged-chr17-33993623-1	chr17	33993523	33993723	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	6710.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	9.29	11.07	11.41	4.02	1.64	3.14	2.66	1.46	4.33	4.02	1.51	3.45
Merged-chr13-58336643-1	chr13	58336543	58336743	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175214, intron 4 of 16)	B1_Mur2|SINE|Alu	18304.0	NM_001360894	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	6.46	8.3	5.13	12.47	3.27	2.82	2.66	5.36	8.85	10.54	7.03	4.7
Merged-chr6-38534271-1	chr6	38534171	38534371	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-590.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	3.63	10.82	10.27	7.64	7.36	7.21	8.3	2.58	13.96	15.06	14.57	12.84
Merged-chr3-145131508-1	chr3	145131408	145131608	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162538, intron 7 of 16)	intron (NM_001162538, intron 7 of 16)	12908.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	2.42	3.52	4.56	0.4	13.91	4.08	6.64	2.41	2.95	6.53	1.51	2.51
Merged-chr4-66821976-1	chr4	66821876	66822076	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5575.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	2.42	2.01	4.56	4.83	9.82	3.45	3.65	6.79	0.79	3.01	3.01	0.31
Merged-chr13-54693296-1	chr13	54693196	54693396	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	664.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.81	4.53	5.7	8.04	3.27	3.45	7.31	3.98	5.31	7.53	5.53	4.7
Merged-chr2-36271905-1	chr2	36271805	36272005	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41479.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.25	1.76	6.85	8.45	7.36	5.96	4.32	5.27	8.06	5.02	6.03	5.01
Merged-chr19-8723846-1	chr19	8723746	8723946	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161413)	promoter-TSS (NM_001161413)	359.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	3.63	6.04	8.56	3.62	4.91	4.7	0.33	2.5	7.87	5.02	6.03	7.52
Merged-chr1-191880342-2	chr1	191880270	191880470	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26411.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	5.65	1.26	1.14	1.21	4.91	4.39	10.96	6.59	0.39	1.51	6.53	5.33
Merged-chr4-129580272-1	chr4	129580172	129580372	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1692.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	0.0	0.75	0.0	1.21	0.0	1.88	0.33	2.24	2.16	1.0	0.5	1.57
Merged-chr11-97850732-1	chr11	97850632	97850832	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9952.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.23	3.77	0.57	3.62	2.45	1.88	4.65	3.9	1.77	3.01	3.01	2.82
Merged-chr5-143623828-1	chr5	143623728	143623928	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	1381.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	8.08	2.26	1.71	3.22	4.09	5.02	6.31	5.5	4.52	9.54	1.51	5.64
Merged-chr17-35423687-2	chr17	35423584	35423784	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER44A|DNA|TcMar-Tigger	-1163.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	9.29	9.56	5.7	9.65	8.59	8.47	8.3	3.95	7.87	4.02	12.06	6.27
Merged-chr8-4252323-1	chr8	4252223	4252423	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	-779.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	5.65	5.03	6.28	1.61	7.77	10.35	3.65	5.64	5.31	10.54	10.05	4.39
Merged-chr3-9984132-2	chr3	9984028	9984228	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28457.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.0	0.5	5.7	3.22	1.64	5.64	2.66	5.97	6.29	12.55	6.53	9.08
Merged-chr6-71555784-1	chr6	71555684	71555884	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361405, intron 2 of 6)	RMER19B|LTR|ERVK	9661.0	NM_001355674	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	2.83	3.27	0.0	0.8	0.0	0.63	4.65	4.37	1.18	0.0	3.01	3.45
Merged-chr3-52047781-1	chr3	52047681	52047881	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57225.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	1.62	6.04	6.85	3.62	5.32	1.88	3.99	6.2	3.54	3.51	5.02	6.89
Merged-chr14-47013044-1	chr14	47012944	47013144	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	11704.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.81	1.51	1.14	3.22	6.14	2.82	4.98	4.68	5.31	5.02	3.01	1.88
Merged-chr12-30605431-1	chr12	30605331	30605531	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20988.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.81	3.52	1.14	2.01	0.41	0.94	2.66	2.92	3.74	2.51	6.53	0.94
Merged-chr6-92943075-1	chr6	92942975	92943175	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	CpG	2493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.81	0.25	0.0	1.61	7.36	3.76	9.3	13.6	0.0	1.0	1.0	1.88
Merged-chr7-18957710-1	chr7	18957610	18957810	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29814.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	8.88	9.81	7.42	4.02	5.32	3.14	3.99	3.7	6.88	2.01	8.04	4.07
Merged-chr4-47322602-3	chr4	47322513	47322713	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30609.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.25	8.55	7.99	9.65	11.05	12.54	9.3	10.26	7.67	5.52	6.03	8.14
Merged-chr1-183116739-1	chr1	183116639	183116839	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278218, intron 3 of 8)	intron (NM_001278218, intron 3 of 8)	30818.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	1.21	3.02	3.42	10.05	1.64	2.51	8.97	5.64	5.9	1.0	2.51	2.19
Merged-chr1-173762686-1	chr1	173762586	173762786	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008329, intron 1 of 8)	intron (NM_008329, intron 1 of 8)	4233.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.0	0.25	0.0	0.0	0.0	0.0	0.0	0.0	8.26	13.05	8.54	7.52
Merged-chr14-70231973-1	chr14	70231873	70232073	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304991, intron 10 of 14)	intron (NM_001304991, intron 10 of 14)	-24302.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	6.46	5.03	4.56	0.4	5.73	1.88	5.98	8.5	8.06	4.02	13.57	6.58
Merged-chr2-181930349-1	chr2	181930249	181930449	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-60877.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	6.46	7.55	2.28	4.42	11.05	5.64	9.97	0.0	5.7	1.51	3.52	16.29
Merged-chr6-16885936-1	chr6	16885836	16886036	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	12505.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.23	2.01	0.0	4.02	2.86	3.76	5.65	4.74	5.7	4.52	9.55	0.94
Merged-chr4-6341252-1	chr4	6341152	6341352	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24428.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.27	4.53	7.99	6.03	7.36	2.82	4.32	9.36	1.97	1.51	0.5	1.88
Merged-chr11-3247486-1	chr11	3247386	3247586	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	18977.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.4	1.26	4.56	0.4	3.68	5.96	2.66	5.58	2.75	3.01	3.01	5.33
Merged-chr4-40142415-2	chr4	40142315	40142515	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-850.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	11.31	5.28	7.99	10.05	8.18	10.98	5.98	7.96	8.26	8.03	2.51	10.65
Merged-chr9-96438761-1	chr9	96438661	96438861	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39914.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.85	4.53	1.71	2.01	8.18	5.02	4.98	6.45	4.72	5.52	5.02	7.83
Merged-chr7-29489010-2	chr7	29488909	29489109	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	Charlie2a|DNA|hAT-Charlie	16451.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	2.02	2.77	7.42	5.23	4.5	13.17	11.63	5.78	8.46	10.54	12.06	5.64
Merged-chr16-4199393-1	chr16	4199293	4199493	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	14011.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	5.65	5.53	0.0	6.44	1.23	2.2	6.31	6.14	3.34	9.04	4.52	3.13
Merged-chr14-106500858-1	chr14	106500758	106500958	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14338.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	9.29	1.01	1.71	4.42	4.91	3.14	4.65	7.63	5.51	2.01	5.53	6.58
Merged-chr18-65013681-1	chr18	65013581	65013781	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-9846.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.04	8.3	1.71	3.22	1.64	8.15	0.66	5.86	11.01	4.02	7.03	3.13
Merged-chr19-10303360-1	chr19	10303260	10303460	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	1517.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	2.42	1.51	4.56	1.61	6.14	2.51	7.31	0.42	2.36	2.51	2.51	1.25
Merged-chr8-128458233-1	chr8	128458133	128458333	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 7 of 16)	intron (NM_001358959, intron 7 of 16)	98992.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	3.02	0.0	1.61	0.82	4.39	1.99	9.25	3.74	0.0	3.52	2.51
Merged-chr19-55812408-1	chr19	55812308	55812508	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	70598.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.44	2.26	7.99	2.01	4.91	1.57	3.99	9.03	1.38	3.51	4.02	3.45
Merged-chr9-94236854-1	chr9	94236754	94236954	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	301227.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	2.02	2.01	1.71	9.65	5.73	1.88	4.32	4.32	4.92	0.5	5.02	1.57
Merged-chr13-54622523-1	chr13	54622423	54622623	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178397, intron 1 of 10)	intron (NM_178397, intron 1 of 10)	739.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	3.23	5.53	4.56	2.01	2.86	6.27	0.66	4.93	5.31	0.5	2.51	2.51
Merged-chr4-46411705-2	chr4	46411603	46411803	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7520.0	NM_053149	93966.0	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	5.65	7.55	11.41	9.65	8.18	10.03	4.98	6.81	6.1	2.51	10.05	1.88
Merged-chr2-31141085-1	chr2	31140985	31141185	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	CpG	923.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.04	2.01	1.14	2.01	9.0	3.76	4.65	5.64	5.7	7.53	3.52	2.19
Merged-chr11-107466594-1	chr11	107466494	107466694	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	4126.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.63	4.02	0.0	1.61	2.86	5.64	3.32	5.13	4.92	4.02	3.01	5.95
Merged-chr2-14231149-1	chr2	14231049	14231249	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	1735.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.04	2.77	0.0	2.01	5.73	5.96	3.65	8.27	4.72	6.03	5.02	6.27
Merged-chr8-14883683-1	chr8	14883583	14883783	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4853.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.57	0.0	1.23	0.0	1.0	0.0	9.24	4.02	5.53	7.52
Merged-chr10-93909190-2	chr10	93909102	93909302	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18000.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	7.27	6.79	5.13	1.21	3.27	7.53	3.32	6.76	0.39	3.51	0.0	0.94
Merged-chr3-133549599-1	chr3	133549499	133549699	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5209.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.44	5.28	2.85	2.82	3.68	2.51	5.65	4.63	3.93	2.01	6.03	1.57
Merged-chr9-85401983-1	chr9	85401883	85402083	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74833.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.21	0.5	2.28	0.0	0.82	0.63	0.0	2.27	13.18	3.51	13.06	4.39
Merged-chr17-27000286-2	chr17	27000190	27000390	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17745.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	12.52	9.31	6.85	6.44	9.41	6.9	1.99	3.81	4.52	8.03	3.52	4.39
Merged-chr4-116077332-1	chr4	116077232	116077432	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153521, intron 1 of 9)	intron (NM_153521, intron 1 of 9)	2063.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	11.71	3.02	9.13	2.01	1.64	1.57	3.99	4.88	1.38	8.03	2.51	5.01
Merged-chr10-116996373-1	chr10	116996273	116996473	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007583, intron 4 of 9)	intron (NM_001007583, intron 4 of 9)	10059.0	NM_001007583	382427.0	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding	1.62	2.01	8.56	6.84	9.82	8.15	3.32	6.17	1.97	4.52	6.53	7.21
Merged-chrX-169034569-1	chrX	169034469	169034669	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009707, intron 1 of 12)	intron (NM_009707, intron 1 of 12)	-2042.0	NM_178754	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	6.46	2.26	7.99	9.65	7.77	3.14	6.64	7.51	3.93	3.01	11.56	7.21
Merged-chr18-53914383-1	chr18	53914283	53914483	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	52270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.23	3.52	1.14	0.8	14.32	5.64	2.33	6.64	2.36	7.53	4.02	1.88
Merged-chr16-43802230-1	chr16	43802130	43802330	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	40009.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	5.65	1.51	1.14	1.61	6.95	5.02	3.32	5.8	4.92	8.54	7.03	7.83
Merged-chr3-98157209-1	chr3	98157109	98157309	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	5.65	2.52	1.71	4.02	8.59	9.41	2.66	4.65	6.69	5.02	6.53	5.64
Merged-chr14-106439488-1	chr14	106439388	106439588	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045938, intron 2 of 3)	intron (NR_045938, intron 2 of 3)	47032.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.42	0.0	0.0	2.82	3.68	5.96	5.98	5.55	4.92	6.53	6.03	2.51
Merged-chr13-56421400-1	chr13	56421300	56421500	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-16955.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	2.42	1.01	3.99	3.22	8.18	8.15	3.99	8.16	1.97	0.0	0.0	1.57
Merged-chr7-116444454-3	chr7	116444403	116444603	+	661.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1045.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.06	6.29	8.56	4.42	8.59	6.9	8.3	6.45	6.88	5.52	11.05	10.96
Merged-chr1-165683529-2	chr1	165683428	165683628	+	661.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	B3A|SINE|B2	24566.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.65	5.03	5.7	0.0	6.95	14.11	3.65	4.37	13.37	12.55	10.55	2.51
Merged-chr12-110508116-3	chr12	110508023	110508223	+	661.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	MIRb|SINE|MIR	22384.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.23	6.29	9.13	4.83	8.18	8.47	8.64	7.93	5.9	3.01	17.08	7.52
Merged-chr16-35767787-2	chr16	35767685	35767885	+	661.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	1571.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	2.02	4.78	9.13	4.42	9.82	6.9	4.32	2.58	7.28	6.03	7.03	4.39
Merged-chr6-49262685-2	chr6	49262588	49262788	+	661.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	1364.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	4.44	1.26	2.28	7.24	7.36	2.82	5.98	5.47	9.44	2.01	10.05	8.77
Merged-chr11-69092925-2	chr11	69092816	69093016	+	661.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009497)	TTS (NM_009497)	4388.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	3.23	5.03	2.85	1.61	6.55	4.08	6.64	4.93	9.83	13.56	5.02	13.47
Merged-chr2-157798500-3	chr2	157798382	157798582	+	661.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025680, intron 4 of 15)	intron (NM_025680, intron 4 of 15)	61081.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	9.29	6.54	7.42	6.03	1.64	6.9	2.33	7.51	8.06	2.51	3.52	7.83
Merged-chr7-132858369-2	chr7	132858273	132858473	+	661.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	-852.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	11.71	4.28	10.27	12.07	3.68	8.15	6.64	1.01	9.44	6.03	8.54	11.28
Merged-chr16-59421060-2	chr16	59420957	59421157	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081190, intron 2 of 8)	intron (NM_001081190, intron 2 of 8)	13675.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	6.06	2.52	9.13	6.03	11.05	4.39	2.66	10.79	9.44	7.53	9.55	9.71
Merged-chr14-72691559-2	chr14	72691459	72691659	+	661.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	MLT1A|LTR|ERVL-MaLR	18444.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	7.67	3.52	0.0	10.05	9.82	10.66	7.31	10.77	10.23	6.03	14.07	2.19
Merged-chr13-40977799-2	chr13	40977680	40977880	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-23230.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	6.06	2.77	2.28	6.84	6.95	8.47	2.33	5.55	12.98	12.05	12.56	6.58
Merged-chr8-70625263-2	chr8	70625170	70625370	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	6825.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.86	12.32	1.14	6.03	8.59	13.48	6.98	5.1	7.08	13.05	6.03	10.02
Merged-chr6-17615975-2	chr6	17615891	17616091	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.25	5.28	6.85	1.61	5.73	8.47	9.3	2.64	13.96	13.05	13.06	6.27
Merged-chr1-184908797-1	chr1	184908697	184908897	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145515, intron 13 of 17)	intron (NM_145515, intron 13 of 17)	-25761.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	1.62	3.52	6.85	4.83	3.68	3.14	7.97	5.3	3.34	4.02	3.52	2.19
Merged-chr7-38002279-1	chr7	38002179	38002379	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17273.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	1.62	4.02	4.56	8.85	6.55	8.15	4.98	8.89	1.97	0.5	7.54	3.13
Merged-chr2-167227642-1	chr2	167227542	167227742	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	12895.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.4	2.52	2.28	2.01	13.09	4.7	7.97	5.55	4.52	1.0	4.02	4.07
Merged-chr16-49164519-1	chr16	49164419	49164619	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166210, intron 32 of 40)	intron (NM_001166210, intron 32 of 40)	107033.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	7.67	1.76	7.42	5.63	4.91	5.96	3.32	5.16	5.31	2.51	16.58	8.14
Merged-chr19-30032412-2	chr19	30032307	30032507	+	661.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1894.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	6.86	3.02	2.85	2.41	7.77	10.03	12.29	4.74	10.23	8.03	5.53	5.64
Merged-chr6-145245419-2	chr6	145245323	145245523	+	661.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	4808.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	0.81	6.79	13.69	6.84	8.18	2.82	1.33	2.52	12.98	17.57	10.55	7.52
Merged-chr5-124476625-3	chr5	124476546	124476746	+	661.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	1589.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	4.44	10.82	4.56	12.87	3.27	3.76	3.99	3.5	9.44	10.04	14.07	8.46
Merged-chr10-98917218-3	chr10	98917216	98917416	+	661.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	2164.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.27	2.01	8.56	6.84	6.95	3.45	1.33	4.18	7.08	8.54	4.02	3.76
Merged-chr7-92742106-1	chr7	92742006	92742206	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015510)	promoter-TSS (NR_015510)	392.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	3.23	3.02	0.0	8.85	2.86	6.27	5.65	4.71	9.83	4.52	2.01	6.58
Merged-chr5-67764973-1	chr5	67764873	67765073	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009727, exon 12 of 36)	exon (NM_009727, exon 12 of 36)	82458.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.04	8.05	5.7	4.02	7.77	4.08	3.99	5.64	7.87	6.03	7.03	4.7
Merged-chr16-92944057-2	chr16	92943961	92944161	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117987.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.02	4.28	6.28	4.42	4.09	8.47	3.65	9.36	6.88	10.04	5.53	6.58
Merged-chr15-8206431-2	chr15	8206320	8206520	+	661.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162906, intron 21 of 52)	L1_Mus2|LINE|L1	37314.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	8.08	4.53	9.7	3.62	4.09	3.45	10.96	3.17	10.03	3.01	6.53	10.02
Merged-chr11-106305580-2	chr11	106305483	106305683	+	661.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3687.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	12.92	19.37	7.99	3.22	10.64	11.6	5.98	3.87	11.21	23.1	16.08	5.33
Merged-chr6-71196274-2	chr6	71196175	71196375	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3604.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	3.63	4.78	9.13	2.41	7.77	5.64	5.65	6.56	12.19	3.01	17.59	7.83
Merged-chr5-33721825-2	chr5	33721795	33721995	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163217)	promoter-TSS (NM_001163217)	171.0	NM_001163215	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	3.23	4.02	0.0	3.62	6.95	2.82	3.32	2.72	1.97	4.52	3.01	2.19
Merged-chr12-111524998-1	chr12	111524898	111525098	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13103.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	4.44	1.01	4.56	2.41	4.5	11.6	6.64	1.09	2.36	2.51	2.01	5.01
Merged-chr2-164706222-2	chr2	164706128	164706328	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7727.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	8.88	4.78	3.42	4.42	7.77	0.94	5.31	9.79	9.83	4.52	8.54	8.14
Merged-chr16-92435073-1	chr16	92434973	92435173	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	31096.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.81	0.75	2.28	1.61	0.41	7.53	3.32	3.36	0.98	3.51	1.51	4.39
Merged-chr11-59778693-2	chr11	59778598	59778798	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_012027, exon 24 of 24)	3' UTR (NM_012027, exon 24 of 24)	8524.0	NR_110894	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	4.04	4.02	2.85	3.22	10.64	10.03	5.65	6.39	12.78	9.54	11.56	5.64
Merged-chr4-8712435-3	chr4	8712361	8712561	+	661.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	(TG)n|Simple_repeat|Simple_repeat	22055.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.04	5.53	6.85	9.25	13.09	5.33	5.31	8.16	6.69	10.54	17.59	7.21
Merged-chr15-97140224-2	chr15	97140134	97140334	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	27010.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	3.23	5.28	11.41	4.02	13.5	2.51	4.65	7.29	7.67	7.53	5.53	6.58
Merged-chr16-15914426-1	chr16	15914326	15914526	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 11 of 18)	intron (NM_001355731, intron 11 of 18)	27140.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.63	3.27	5.7	11.66	4.91	1.25	4.65	4.46	7.28	3.51	16.08	4.07
Merged-chr9-44182477-2	chr9	44182371	44182571	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	B3|SINE|B2	47813.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	13.33	8.55	7.42	7.24	14.32	8.15	5.98	5.92	10.23	3.51	9.55	3.76
Merged-chr7-34195827-3	chr7	34195704	34195904	+	661.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026549, intron 3 of 6)	B2_Mm2|SINE|B2	866.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	7.67	9.31	1.14	6.44	10.64	5.64	7.97	5.78	10.82	5.52	7.03	7.21
Merged-chr13-42074613-3	chr13	42074548	42074748	+	661.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	22627.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	7.67	7.29	20.54	8.04	5.32	3.76	6.98	6.34	9.64	13.56	22.61	12.22
Merged-chr12-41487232-2	chr12	41487133	41487333	+	661.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-1176.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	8.08	3.27	10.27	9.65	8.59	6.27	6.31	10.15	5.51	12.05	4.02	7.21
Merged-chr18-82843746-3	chr18	82843661	82843861	+	661.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-12136.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	8.48	3.77	11.41	9.65	7.36	10.98	5.98	8.92	10.82	9.54	13.57	8.46
Merged-chr4-48380784-2	chr4	48380693	48380893	+	661.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281978, intron 4 of 18)	intron (NM_001281978, intron 4 of 18)	92670.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	1.21	1.01	2.28	4.02	9.0	6.59	5.98	5.61	8.06	4.52	7.54	9.71
Merged-chr4-45418498-2	chr4	45418405	45418605	+	661.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9739.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	9.29	4.78	1.71	3.62	11.45	10.66	2.66	5.75	6.29	3.01	6.53	3.76
Merged-chr8-127837029-1	chr8	127836929	127837129	+	661.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	441196.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	6.86	3.27	7.42	1.61	1.23	1.88	2.66	2.05	7.28	7.53	14.07	10.34
Merged-chr3-89449694-3	chr3	89449556	89449756	+	661.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-4885.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	4.85	7.8	6.28	2.01	9.82	4.39	1.99	6.06	9.83	11.55	12.06	4.7
Merged-chr18-5163235-3	chr18	5163237	5163437	+	661.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2394.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	2.42	4.28	7.42	8.45	4.09	5.02	5.31	3.17	5.11	8.54	5.02	3.13
Merged-chr5-88559332-1	chr5	88559232	88559432	+	661.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4870.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	3.63	2.77	4.56	2.41	5.73	9.09	5.31	5.69	15.14	3.51	7.54	6.58
Merged-chr4-11005188-2	chr4	11005081	11005281	+	661.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	2438.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	8.88	4.53	5.7	12.07	3.27	5.33	3.32	6.2	5.31	1.51	6.03	5.95
Merged-chr5-115274036-1	chr5	115273936	115274136	+	661.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.06	5.28	5.7	2.41	7.77	6.9	6.31	7.23	4.52	5.02	7.54	1.57
Merged-chr16-77443533-2	chr16	77443433	77443633	+	661.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114205.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	11.31	5.28	9.13	4.42	1.64	5.96	9.3	8.86	6.29	6.03	16.08	3.45
Merged-chr6-125069567-2	chr6	125069470	125069670	+	661.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163269, intron 1 of 1)	intron (NM_001163269, intron 1 of 1)	1650.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	3.23	7.04	4.56	9.25	0.82	5.96	8.3	12.62	1.18	1.0	6.03	5.95
Merged-chr14-30877040-2	chr14	30876918	30877118	+	661.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-2239.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	7.27	4.02	14.83	5.23	7.36	5.33	6.31	8.44	7.28	8.03	9.55	6.89
Merged-chr1-191333585-2	chr1	191333470	191333670	+	661.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	7605.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	2.02	3.77	5.13	1.21	2.45	2.2	6.64	3.93	9.44	5.02	8.54	6.89
Merged-chr9-78006837-3	chr9	78006761	78006961	+	661.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45097.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	4.44	5.28	7.99	10.05	6.14	6.59	12.29	7.15	4.72	13.56	16.58	5.01
Merged-chr8-108868076-3	chr8	108868007	108868207	+	661.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-68753.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.04	5.53	5.7	11.66	4.91	5.96	4.32	7.12	13.18	17.57	23.62	6.27
Merged-chr10-75436852-3	chr10	75436794	75436994	+	661.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133995, exon 8 of 10)	exon (NM_133995, exon 8 of 10)	-12616.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	11.31	4.28	1.71	7.24	6.55	7.21	3.65	5.13	10.82	7.53	9.04	10.65
Merged-chr7-27725894-2	chr7	27725821	27726021	+	661.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-5488.0	NM_029531	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	6.46	0.25	0.57	2.01	5.73	5.33	6.98	3.45	2.56	8.54	5.02	7.83
Merged-chr2-122149551-2	chr2	122149473	122149673	+	661.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	RSINE1|SINE|B4	1886.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.65	7.04	2.28	8.45	6.55	7.84	0.66	3.73	9.44	14.06	9.04	6.58
Merged-chr1-125371010-1	chr1	125370910	125371110	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64717.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	9.69	11.57	12.55	15.69	4.5	5.33	3.32	3.25	4.13	1.51	4.02	1.25
Merged-chr13-112473867-2	chr13	112473780	112473980	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010560, intron 2 of 16)	intron (NM_010560, intron 2 of 16)	9810.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	8.88	6.54	5.7	4.02	3.27	1.57	7.97	4.63	5.11	11.55	2.51	1.88
Merged-chr8-11004924-1	chr8	11004824	11005024	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2926.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.42	2.77	0.0	3.62	7.36	5.02	1.99	5.83	3.74	2.01	1.0	0.63
Merged-chr2-155249757-1	chr2	155249657	155249857	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_111890, intron 3 of 3)	intron (NR_111890, intron 3 of 3)	13149.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.0	0.25	0.57	0.8	4.91	5.33	5.65	9.34	2.75	1.0	2.51	0.63
Merged-chr6-53496374-1	chr6	53496274	53496474	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-77000.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	2.77	3.99	1.61	2.86	1.57	2.99	4.49	3.74	0.5	6.03	2.51
Merged-chr11-93820925-2	chr11	93820831	93821031	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64835.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	1.01	0.0	0.0	8.18	3.76	4.65	8.44	12.0	13.05	11.56	6.89
Merged-chr9-13492997-1	chr9	13492897	13493097	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61636.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.85	3.27	6.85	4.02	8.18	5.02	4.32	9.36	5.7	5.02	5.53	1.25
Merged-chr17-29497593-1	chr17	29497493	29497693	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	6548.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	16.56	18.11	4.56	11.66	4.91	19.13	1.33	0.39	10.82	12.05	2.01	3.45
Merged-chr10-40192702-1	chr10	40192602	40192802	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50448.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.23	5.03	3.42	3.22	9.0	3.45	1.66	5.33	8.85	4.02	8.04	4.07
Merged-chr8-46756050-3	chr8	46755942	46756142	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16297.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.42	5.53	20.54	12.07	6.55	3.14	2.99	6.22	17.7	0.5	13.06	6.58
Merged-chr8-110971521-1	chr8	110971421	110971621	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	26302.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	4.04	4.53	2.85	3.22	9.41	5.64	4.32	6.25	2.95	2.01	1.51	2.19
Merged-chr19-11928336-1	chr19	11928236	11928436	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 9 of 18)	B2_Mm2|SINE|B2	4608.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.81	1.51	2.28	0.0	2.45	4.7	1.99	4.07	8.26	12.05	7.03	0.94
Merged-chr2-160369174-1	chr2	160369074	160369274	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2109.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.06	6.04	5.7	5.63	2.45	2.82	5.98	4.49	3.74	2.51	0.5	6.27
Merged-chr2-78868016-1	chr2	78867916	78868116	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1031.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	5.65	4.28	5.13	1.61	5.73	3.14	1.99	5.44	9.83	5.52	5.02	2.51
Merged-chr11-22851535-1	chr11	22851435	22851635	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	8200.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	1.62	2.26	3.42	4.83	4.91	9.72	2.99	4.85	8.06	5.02	10.05	2.51
Merged-chr4-114665866-1	chr4	114665766	114665966	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-155854.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	6.86	8.05	6.85	9.25	2.05	3.45	2.66	4.71	11.8	18.58	13.57	4.7
Merged-chr4-9144349-1	chr4	9144249	9144449	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124944.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.4	2.01	3.42	6.84	2.86	4.08	3.65	8.92	4.33	5.52	15.07	5.01
Merged-chr10-43829158-1	chr10	43829058	43829258	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131055, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	3251.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.25	0.0	0.0	5.32	5.96	14.28	8.38	0.2	0.0	1.0	1.25
Merged-chr3-132086043-1	chr3	132085943	132086143	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020265, exon 1 of 4)	exon (NM_020265, exon 1 of 4)	751.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.81	4.78	0.0	0.0	6.55	2.82	4.65	3.14	4.13	3.01	4.02	2.82
Merged-chr8-110193269-1	chr8	110193169	110193369	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-24691.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	5.25	2.77	5.7	3.22	4.5	1.25	1.66	1.4	10.23	1.51	9.55	8.46
Merged-chr11-102138552-2	chr11	102138448	102138648	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6965.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	5.65	5.28	11.41	2.82	6.14	10.03	3.32	6.39	9.83	7.03	8.54	6.58
Merged-chr2-155033620-1	chr2	155033520	155033720	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015770, intron 1 of 3)	intron (NM_015770, intron 1 of 3)	20050.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	5.65	5.28	6.28	1.61	6.55	5.64	6.31	13.35	4.72	4.02	1.51	1.25
Merged-chr15-39199177-1	chr15	39199077	39199277	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256383, intron 1 of 25)	intron (NM_001256383, intron 1 of 25)	891.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.23	4.78	3.42	4.42	4.91	4.7	8.3	5.61	7.67	2.01	7.54	1.57
Merged-chr2-69586207-1	chr2	69586107	69586307	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081088)	promoter-TSS (NM_001081088)	-140.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	3.63	0.25	7.42	1.61	0.82	1.57	3.32	2.55	4.52	2.01	2.51	2.82
Merged-chr10-121533472-1	chr10	121533372	121533572	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53322.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	5.03	0.0	4.02	1.23	0.94	5.65	3.08	2.95	6.53	3.52	2.51
Merged-chr11-82834671-1	chr11	82834571	82834771	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164570, intron 1 of 7)	B2_Mm1t|SINE|B2	-5628.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	8.08	2.52	3.42	4.42	6.55	9.09	4.32	1.63	9.24	6.53	3.01	8.14
Merged-chr15-99473788-1	chr15	99473688	99473888	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	942.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	2.42	2.01	2.28	1.21	3.27	1.88	3.32	2.27	3.15	2.51	3.52	2.51
Merged-chr13-69559958-1	chr13	69559858	69560058	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26094.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	6.46	5.03	6.28	7.64	7.77	5.96	1.33	10.07	0.0	0.5	0.0	0.31
Merged-chr17-10314628-1	chr17	10314528	10314728	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4733.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	2.83	2.52	2.28	4.83	6.55	4.7	1.33	7.29	2.95	6.03	1.0	6.58
Merged-chr1-39736457-1	chr1	39736357	39736557	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15468.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	5.65	1.26	2.28	1.61	7.77	4.08	7.31	6.31	0.79	4.02	1.0	1.88
Merged-chr7-96999107-3	chr7	96999008	96999208	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	L1Md_F2|LINE|L1	47581.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	8.88	7.04	15.4	9.25	9.82	7.21	4.32	10.54	12.39	7.53	11.56	10.02
Merged-chr19-12430633-1	chr19	12430533	12430733	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	2728.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	4.44	5.03	11.41	6.44	4.5	7.53	5.98	6.48	9.83	2.01	5.53	4.07
Merged-chr6-116004180-1	chr6	116004080	116004280	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9175.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	7.67	7.04	12.55	9.65	2.45	5.64	1.66	5.61	8.26	11.05	6.03	9.71
Merged-chr1-161053324-1	chr1	161053224	161053424	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172644, intron 10 of 16)	intron (NM_172644, intron 10 of 16)	15232.0	NR_028543	100217446.0		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	0.0	1.01	0.0	0.0	8.18	2.82	6.31	6.39	0.79	0.0	0.0	0.94
Merged-chr7-83586269-2	chr7	83586170	83586370	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 1 of 22)	intron (NM_177695, intron 1 of 22)	1339.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	1.62	3.27	6.85	6.03	3.68	3.45	11.96	6.31	5.51	14.56	13.57	9.71
Merged-chr6-42295902-1	chr6	42295802	42296002	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9217.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	2.02	3.27	9.13	5.23	2.45	5.96	6.31	7.91	7.47	3.51	9.55	5.01
Merged-chr11-119084621-2	chr11	119084535	119084735	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	1602.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	8.08	10.56	10.27	4.83	5.73	11.29	2.33	3.9	18.1	12.55	8.54	6.27
Merged-chr18-61911859-1	chr18	61911759	61911959	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360868)	promoter-TSS (NM_001360868)	-7.0	NM_001164491	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	8.08	4.28	9.7	2.41	12.68	5.96	1.0	5.33	8.65	6.03	8.04	4.7
Merged-chr14-40914936-1	chr14	40914836	40915036	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 5 of 8)	intron (NM_145928, intron 5 of 8)	-21971.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.81	0.75	2.28	0.8	6.95	4.39	4.65	5.97	1.38	5.52	4.52	2.19
Merged-chr10-87740716-1	chr10	87740616	87740816	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117549.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.63	4.28	5.13	2.82	6.95	4.39	6.64	5.86	5.7	11.05	8.04	4.39
Merged-chr13-45006661-1	chr13	45006561	45006761	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4565.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	10.5	7.55	8.56	5.63	2.45	14.42	1.0	2.94	3.93	7.03	2.01	3.76
Merged-chr2-166108527-1	chr2	166108427	166108627	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	46758.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	6.86	3.02	3.42	4.83	0.82	6.59	2.33	5.78	5.7	6.03	8.54	5.95
Merged-chr7-45731245-1	chr7	45731145	45731345	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_017465, exon 6 of 7)	exon (NM_017465, exon 6 of 7)	-5429.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	8.48	5.28	3.42	1.21	7.36	11.29	8.3	3.34	7.08	8.54	7.54	6.89
Merged-chr14-78731417-1	chr14	78731317	78731517	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	1312.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.04	3.27	7.42	5.63	4.5	4.7	3.32	4.93	5.9	4.02	2.01	1.88
Merged-chr5-33434353-1	chr5	33434253	33434453	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011320)	promoter-TSS (NM_011320)	-263.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	3.63	2.77	3.42	3.22	6.95	6.27	4.98	7.07	8.85	6.03	9.04	7.83
Merged-chr2-160617394-1	chr2	160617294	160617494	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28503.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.04	1.01	1.14	2.82	4.91	8.47	3.65	5.44	4.33	3.01	1.0	1.25
Merged-chr9-116140628-1	chr9	116140528	116140728	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	34735.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.4	1.26	0.0	0.8	6.95	4.39	2.33	1.4	2.16	1.51	1.0	0.31
Merged-chr16-38632227-1	chr16	38632127	38632327	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 3 of 11)	B3|SINE|B2	69413.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	5.79	1.71	5.63	3.27	3.45	1.99	2.52	7.28	11.05	4.52	3.76
Merged-chr10-75037141-1	chr10	75037041	75037241	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359271)	promoter-TSS (NM_001359271)	83.0	NM_001359271	76877.0	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	4.04	7.55	3.99	6.44	4.91	5.96	4.32	8.8	7.67	3.51	7.54	3.76
Merged-chr4-153514202-1	chr4	153514102	153514302	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31372.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	2.42	0.5	0.0	0.8	2.86	6.27	2.66	7.37	0.0	0.0	1.51	2.19
Merged-chr4-20008309-4	chr4	20008197	20008397	+	660.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317723)	promoter-TSS (NM_001317723)	-32.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	8.08	6.54	12.55	7.24	6.14	5.64	11.96	13.68	6.69	14.56	8.54	9.08
Merged-chr4-33239968-2	chr4	33239824	33240024	+	660.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8863.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	1.62	3.27	6.85	0.8	2.45	5.33	0.66	3.87	4.52	3.01	3.52	3.76
Merged-chr1-55473949-2	chr1	55473857	55474057	+	660.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	68011.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.81	3.52	2.85	0.0	5.32	15.05	4.65	5.72	15.54	7.53	19.09	3.45
Merged-chr9-104272340-3	chr9	104272231	104272431	+	660.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9401.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	7.67	8.55	5.7	4.83	9.0	7.53	6.98	6.2	7.28	14.06	14.07	6.89
Merged-chr9-37531002-3	chr9	37530903	37531103	+	660.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2914.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	8.08	6.54	3.42	6.84	7.36	10.35	3.65	4.46	6.49	11.55	15.07	9.71
Merged-chr17-86170495-3	chr17	86170338	86170538	+	660.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	2653.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	8.88	2.52	7.99	7.24	10.64	6.59	14.28	5.72	6.1	3.51	6.03	4.07
Merged-chr4-123940028-1	chr4	123939928	123940128	+	660.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22595.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.25	5.03	11.41	5.23	8.59	8.78	4.65	7.82	8.26	3.01	1.51	4.39
Merged-chr15-32766455-2	chr15	32766345	32766545	+	660.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155440, intron 1 of 1)	intron (NR_155440, intron 1 of 1)	6707.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	5.25	7.04	10.27	6.03	3.68	6.9	9.97	9.22	11.41	9.04	10.55	4.7
Merged-chr8-46951886-4	chr8	46951862	46952062	+	660.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34925.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.63	6.04	3.42	6.84	5.32	4.08	1.66	6.11	6.49	5.52	5.02	7.52
Merged-chr8-81010534-1	chr8	81010434	81010634	+	660.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027554, intron 2 of 9)	Tigger5|DNA|TcMar-Tigger	4372.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.81	3.52	4.56	0.0	4.09	3.76	2.66	2.44	11.21	20.08	12.56	6.27
Merged-chr11-79529814-3	chr11	79529752	79529952	+	660.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	757.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	7.67	10.56	5.13	5.23	4.91	11.6	2.66	5.02	5.9	8.03	4.02	11.59
Merged-chr11-86692106-3	chr11	86692021	86692221	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	8040.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	8.88	3.77	10.27	2.01	6.55	6.59	2.99	8.1	10.82	2.51	13.57	7.83
Merged-chr15-75886157-2	chr15	75886060	75886260	+	660.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282443, intron 7 of 13)	intron (NM_001282443, intron 7 of 13)	2563.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	4.85	3.52	3.99	6.44	5.73	11.6	6.64	4.68	8.26	1.0	9.04	11.9
Merged-chrX-12260918-3	chrX	12260821	12261021	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	94075.0	NR_045321	100043946.0	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	-	predicted gene 14635	ncRNA	4.44	6.54	9.13	7.24	9.82	11.92	5.65	10.04	10.23	10.04	14.57	6.58
Merged-chr1-183298200-3	chr1	183298100	183298300	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-907.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	6.86	6.29	5.13	10.05	10.64	6.27	3.65	7.85	11.41	4.02	2.51	8.46
Merged-chr17-29493735-1	chr17	29493635	29493835	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008842, exon 5 of 6)	exon (NM_008842, exon 5 of 6)	2690.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	11.71	6.79	13.69	10.05	2.45	3.45	3.99	2.21	5.51	2.51	3.52	4.7
Merged-chr16-36061391-1	chr16	36061291	36061491	+	660.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	10124.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	6.46	3.27	10.27	11.26	5.73	6.27	8.64	6.53	4.92	2.51	8.54	6.27
Merged-chr16-13447871-2	chr16	13447745	13447945	+	660.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1678.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	8.88	7.55	10.84	3.62	12.27	10.03	2.33	5.58	6.88	7.03	10.05	8.14
Merged-chr10-95500854-3	chr10	95500761	95500961	+	660.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359476, intron 1 of 5)	intron (NM_001359476, intron 1 of 5)	1088.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	8.88	7.55	5.7	13.27	10.64	14.42	5.98	16.04	11.41	9.04	12.06	7.21
Merged-chr9-59723275-3	chr9	59723158	59723358	+	660.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15494.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	10.09	6.54	8.56	8.85	6.55	6.27	5.65	6.76	14.75	8.54	8.54	8.77
Merged-chrX-103980227-3	chrX	103980142	103980342	+	660.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358205, intron 1 of 4)	intron (NM_001358205, intron 1 of 4)	1043.0	NM_001358205	19820.0	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	6.86	6.79	5.7	7.24	7.36	7.84	4.32	6.87	11.21	8.54	15.58	1.57
Merged-chr6-134828614-2	chr6	134828560	134828760	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-1539.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	7.67	3.27	0.57	0.8	4.09	7.21	4.98	6.34	2.75	5.02	6.53	3.45
Merged-chr12-40471631-3	chr12	40471507	40471707	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	25554.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.83	5.28	7.42	4.02	9.0	2.82	5.31	4.82	9.83	4.52	9.04	8.14
Merged-chr5-140828774-1	chr5	140828674	140828874	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	1657.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	7.67	1.51	1.14	10.86	6.14	2.2	5.31	6.53	2.36	1.51	6.03	0.31
Merged-chr19-46600580-2	chr19	46600476	46600676	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146099, intron 1 of 3)	L1MB5|LINE|L1	1470.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.0	5.28	6.85	3.22	4.09	5.64	7.97	6.39	8.46	8.54	5.02	6.58
Merged-chr5-88727939-2	chr5	88727859	88728059	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026735, intron 1 of 5)	L1MC4|LINE|L1	7088.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	2.02	7.8	7.99	8.85	4.09	2.82	5.98	6.98	13.37	5.52	10.05	4.7
Merged-chr15-79346561-1	chr15	79346461	79346661	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	-60.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	2.02	3.77	7.42	1.61	9.82	2.2	4.32	6.06	2.95	6.53	6.53	3.45
Merged-chr5-65577025-1	chr5	65576925	65577125	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016786, intron 3 of 6)	intron (NM_016786, intron 3 of 6)	39780.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	2.42	7.29	4.56	8.85	6.14	6.9	3.65	6.64	6.88	5.52	5.02	6.89
Merged-chr10-17676612-2	chr10	17676508	17676708	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46620.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.63	6.29	5.13	4.42	5.32	1.88	5.31	5.33	4.13	3.01	10.55	10.34
Merged-chr16-44692062-1	chr16	44691962	44692162	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32239.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	5.25	2.01	9.7	5.63	10.64	0.63	6.64	6.11	7.67	6.53	12.06	1.88
Merged-chr3-51234628-3	chr3	51234513	51234713	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	10166.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	10.09	5.28	8.56	3.62	15.14	12.23	1.99	7.57	16.52	8.03	8.54	6.58
Merged-chr2-83625418-2	chr2	83625312	83625512	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19166.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.23	2.26	5.7	3.22	4.09	8.47	3.99	7.46	7.87	8.54	15.07	2.82
Merged-chr12-116283150-2	chr12	116283048	116283248	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	1926.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	2.83	7.29	5.7	6.44	6.55	5.96	1.0	6.08	11.6	5.52	11.56	5.33
Merged-chr11-54995379-1	chr11	54995279	54995479	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138556, intron 14 of 24)	MIR3|SINE|MIR	-32439.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.81	3.02	1.71	6.84	8.59	3.45	2.99	8.44	7.87	8.03	7.54	4.07
Merged-chr13-59843024-3	chr13	59842908	59843108	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19861.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.63	9.81	10.27	1.61	6.14	9.72	5.98	8.1	11.21	11.05	15.07	5.64
Merged-chr12-35533440-2	chr12	35533332	35533532	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	1557.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	9.69	8.05	1.14	2.01	1.23	10.03	1.33	5.3	8.85	11.55	6.53	1.25
Merged-chr14-72601797-3	chr14	72601824	72602024	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	108079.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.63	4.02	2.28	4.83	1.64	0.94	1.99	1.15	3.54	5.02	3.52	3.13
Merged-chr12-52605492-2	chr12	52605353	52605553	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3131.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	3.63	2.01	0.57	5.23	5.73	7.53	3.99	4.57	7.08	3.51	11.05	5.01
Merged-chr11-21240978-2	chr11	21240876	21241076	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1944.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	8.88	10.82	3.42	0.8	2.45	12.23	2.66	2.75	16.92	4.52	12.56	4.7
Merged-chr15-66969092-5	chr15	66968931	66969131	+	660.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008681, intron 1 of 15)	CpG	610.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	4.04	5.79	5.7	3.22	6.55	5.96	4.32	5.27	2.56	6.53	5.53	3.45
Merged-chr1-189807140-1	chr1	189807040	189807240	+	660.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	78872.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.0	0.0	0.57	0.0	0.0	0.0	1.33	0.03	9.24	8.54	15.58	8.46
Merged-chr8-122454630-3	chr8	122454528	122454728	+	660.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013914, exon 3 of 3)	3' UTR (NM_013914, exon 3 of 3)	-3306.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	3.23	7.29	12.55	7.24	9.82	9.09	4.32	9.81	11.01	8.03	10.55	11.28
Merged-chr5-144231557-2	chr5	144231473	144231673	+	660.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7958.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	7.67	6.79	7.42	4.83	12.68	8.47	2.66	6.79	10.62	17.57	5.53	1.25
Merged-chr13-9188782-2	chr13	9188689	9188889	+	660.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87736.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.23	5.53	4.56	5.63	9.0	3.45	5.31	6.28	6.1	10.04	8.54	5.01
Merged-chr6-31088507-4	chr6	31088350	31088550	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25357.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	2.83	6.79	5.7	2.82	5.73	6.59	0.66	4.35	11.01	4.52	7.03	8.14
Merged-chr2-4401475-1	chr2	4401375	4401575	+	660.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177843, exon 1 of 24)	5' UTR (NM_001177843, exon 1 of 24)	499.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	9.69	4.28	6.85	7.24	0.41	1.88	3.99	6.87	10.03	12.55	14.57	3.76
Merged-chr17-27650351-3	chr17	27650245	27650445	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5246.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	6.86	8.3	17.68	9.25	6.14	8.47	5.98	6.45	8.65	15.06	8.54	8.77
Merged-chr11-59224616-3	chr11	59224515	59224715	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	3547.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	8.08	7.55	9.13	8.85	8.18	10.03	3.32	10.32	5.31	14.06	13.57	3.13
Merged-chr2-91729662-1	chr2	91729562	91729762	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-476.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	3.23	8.55	12.55	12.87	2.86	0.63	0.33	1.77	11.6	6.03	6.53	6.89
Merged-chr4-136887868-3	chr4	136887776	136887976	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1699.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	6.06	7.04	7.99	0.8	4.91	5.64	2.66	0.42	11.41	8.03	5.53	3.13
Merged-chr16-43335710-1	chr16	43335610	43335810	+	660.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	84486.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	2.42	4.78	2.28	1.21	7.77	3.45	4.98	6.84	3.34	4.02	2.51	4.07
Merged-chr2-30435947-3	chr2	30435799	30435999	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138748, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	19849.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	8.48	8.05	7.99	6.44	5.32	8.15	3.65	5.5	5.9	6.53	12.56	5.33
Merged-chr3-89349335-2	chr3	89349189	89349389	+	660.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029974)	TTS (NM_029974)	739.0	NM_001037722	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	4.85	6.04	2.85	6.03	4.5	4.39	4.32	7.93	2.16	4.52	4.02	5.33
Merged-chr5-135674498-2	chr5	135674394	135674594	+	660.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14651.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.04	1.51	3.42	2.01	7.77	5.33	5.98	10.54	8.46	14.06	5.02	8.46
Merged-chr8-46923589-2	chr8	46923481	46923681	+	660.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-63306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.4	3.52	7.42	5.63	4.91	8.78	5.31	7.63	8.06	9.04	16.08	8.14
Merged-chr8-24395015-2	chr8	24394909	24395109	+	660.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43937.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.65	3.02	0.0	3.22	3.27	9.09	3.32	8.94	14.75	7.03	9.55	5.64
Merged-chr2-25551343-3	chr2	25551233	25551433	+	660.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4393.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	8.88	6.79	5.7	9.25	14.32	8.78	3.32	3.98	11.6	4.52	6.03	10.02
Merged-chr9-107634175-3	chr9	107634070	107634270	+	660.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1172.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.04	5.28	11.41	8.04	4.09	4.08	6.31	6.11	6.69	10.54	12.06	8.46
Merged-chrX-10716454-3	chrX	10716352	10716552	+	660.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166635)	promoter-TSS (NM_001166635)	-913.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	9.29	9.31	3.42	1.61	12.27	20.07	7.97	1.54	9.64	14.06	12.56	7.83
Merged-chr17-5929175-3	chr17	5929029	5929229	+	660.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 17 of 17)	B3|SINE|B2	-12151.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.81	4.02	11.41	6.84	6.14	5.96	6.64	5.78	8.85	9.04	4.52	4.7
Merged-chr5-24453028-3	chr5	24452910	24453110	+	660.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	833.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	10.9	5.28	6.28	6.84	7.36	3.45	5.98	6.81	9.24	9.04	9.04	13.78
Merged-chr7-30795133-2	chr7	30795025	30795225	+	660.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7220.0	NM_001033131	64661.0	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	5.65	9.06	1.14	7.24	3.68	8.15	2.33	5.47	11.6	8.54	10.05	10.96
Merged-chr10-99267757-2	chr10	99267649	99267849	+	660.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026268)	TTS (NM_026268)	4518.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.67	9.06	11.41	8.04	6.55	5.02	4.98	3.39	0.98	3.01	2.51	4.07
Merged-chr10-8869096-3	chr10	8869019	8869219	+	660.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	16951.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	9.69	8.3	14.83	8.85	11.86	6.9	5.98	9.64	7.47	11.55	9.04	7.52
Merged-chr9-3030174-2	chr9	3030074	3030274	+	660.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	8569.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.46	9.06	9.7	4.02	11.45	3.14	6.31	11.24	12.98	18.08	14.57	11.9
Merged-chr11-17166852-2	chr11	17166749	17166949	+	660.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	7551.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	8.08	5.53	5.7	9.25	5.73	6.59	6.98	9.36	9.44	9.54	6.53	7.52
Merged-chr7-45447743-3	chr7	45447632	45447832	+	660.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	12154.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	6.46	6.79	4.56	3.22	7.77	5.33	1.33	6.36	7.28	10.54	7.03	3.76
Merged-chr8-123374914-1	chr8	123374814	123375014	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359076, intron 1 of 16)	intron (NM_001359076, intron 1 of 16)	1203.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	11.71	2.01	2.85	5.23	4.09	6.59	3.32	5.07	12.98	4.02	9.04	7.21
Merged-chr2-103801268-1	chr2	103801168	103801368	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3628.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	2.42	4.02	9.13	5.23	2.45	0.63	1.99	2.64	10.62	0.5	7.03	7.21
Merged-chr2-4591158-1	chr2	4591058	4591258	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	31404.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.63	4.02	4.56	0.0	1.64	7.53	2.66	3.25	12.39	9.04	10.55	5.01
Merged-chr2-155098830-1	chr2	155098730	155098930	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040634, exon 3 of 3)	non-coding (NR_040634, exon 3 of 3)	1249.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	2.83	0.5	0.0	0.4	11.86	5.64	2.66	5.44	0.59	1.0	1.51	0.31
Merged-chr2-44985147-1	chr2	44985047	44985247	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	38030.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	2.02	3.02	11.98	1.61	1.23	1.57	2.33	2.07	8.65	8.54	6.53	2.82
Merged-chr3-41741777-1	chr3	41741677	41741877	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	737.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	3.23	3.52	2.28	3.62	4.91	1.57	5.31	5.72	7.28	3.01	4.52	11.59
Merged-chr2-52423330-2	chr2	52423224	52423424	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	1550.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	1.62	4.53	5.7	2.82	8.18	4.08	7.31	6.17	7.87	11.05	15.58	7.21
Merged-chr3-86141664-1	chr3	86141564	86141764	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_004418)	promoter-TSS (NR_004418)	-977.0	NR_004418	19871.0		NR_004418	ENSMUSG00000064390	Rnu73b	U73b	U73B small nuclear RNA	snRNA	1.62	3.77	3.99	0.8	2.45	5.96	5.65	5.3	7.28	11.55	8.54	3.13
Merged-chrX-10721519-1	chrX	10721419	10721619	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4154.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	2.42	0.5	7.99	2.41	9.82	7.53	1.0	6.31	7.47	7.53	9.04	3.13
Merged-chr5-135794681-2	chr5	135794601	135794801	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16052.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	3.63	6.04	7.99	4.02	0.41	7.84	2.99	2.16	9.24	9.54	8.04	4.7
Merged-chr13-92702767-1	chr13	92702667	92702867	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172588, intron 9 of 11)	intron (NM_172588, intron 9 of 11)	91629.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	5.65	0.5	0.0	6.44	5.73	1.25	5.31	6.34	5.51	0.0	3.52	4.07
Merged-chr16-93835341-1	chr16	93835241	93835441	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	3220.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.4	4.02	0.0	2.82	4.91	3.14	0.33	5.47	12.0	6.03	4.52	6.58
Merged-chr19-10759740-2	chr19	10759629	10759829	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027805, intron 1 of 3)	L2a|LINE|L2	18782.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	16.56	6.79	6.85	7.24	3.68	9.41	8.64	6.14	7.87	13.05	15.07	3.45
Merged-chr13-109212975-1	chr13	109212875	109213075	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-111769.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.42	0.5	0.0	3.22	3.27	0.63	2.99	2.69	2.56	3.01	7.03	1.88
Merged-chr19-29501703-1	chr19	29501603	29501803	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20284.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.85	4.78	1.14	0.0	4.09	7.84	4.32	4.07	11.8	6.03	10.05	9.08
Merged-chr12-111958225-1	chr12	111958125	111958325	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	8784.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	2.83	6.04	2.28	5.63	4.09	1.88	1.0	2.75	7.67	3.01	3.52	7.83
Merged-chr1-154062020-1	chr1	154061920	154062120	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-139167.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	1.21	5.79	0.0	6.03	7.36	5.02	4.65	7.6	6.69	8.03	4.02	8.46
Merged-chr14-33231637-1	chr14	33231537	33231737	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	14814.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.04	3.52	1.14	5.63	4.5	1.25	2.66	4.01	2.75	4.52	3.52	5.01
Merged-chr3-132168669-1	chr3	132168569	132168769	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83377.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.23	1.01	3.99	2.41	2.05	0.63	3.65	5.07	5.31	5.52	0.0	3.13
Merged-chr2-73428589-1	chr2	73428489	73428689	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25300.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	1.62	3.52	0.0	3.22	2.86	1.25	2.33	2.44	1.97	1.51	1.0	1.25
Merged-chr6-125120207-1	chr6	125120107	125120307	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145979, exon 26 of 39)	exon (NM_145979, exon 26 of 39)	-11676.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	2.02	5.03	1.14	1.61	1.64	5.02	1.0	4.32	4.72	3.51	6.53	2.51
Merged-chr11-62557225-1	chr11	62557125	62557325	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	5494.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	4.85	4.53	6.85	6.03	6.55	9.09	0.66	4.85	5.31	5.02	0.5	5.64
Merged-chr6-42302556-1	chr6	42302456	42302656	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013491, intron 12 of 22)	intron (NM_013491, intron 12 of 22)	15871.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.81	1.01	1.14	0.8	3.27	6.9	3.65	6.81	4.92	3.01	6.03	4.07
Merged-chr2-21056390-1	chr2	21056290	21056490	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87516.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	3.23	0.5	0.0	6.03	3.27	5.64	1.33	6.03	7.08	7.03	3.52	6.89
Merged-chr11-87754709-1	chr11	87754609	87754809	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2155.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	8.08	4.28	1.71	2.01	6.55	3.14	1.0	1.85	11.6	10.04	8.04	7.21
Merged-chr11-118400226-1	chr11	118400126	118400326	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	1733.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	1.21	1.51	0.57	0.4	2.45	7.84	1.66	5.38	3.74	2.51	3.01	0.94
Merged-chr1-187586780-1	chr1	187586680	187586880	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22226.0	NM_001243792	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	2.02	4.02	0.0	1.61	0.0	0.63	0.0	0.42	3.15	10.04	14.57	4.07
Merged-chr5-77245650-2	chr5	77245532	77245732	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19862.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	2.83	1.51	11.41	3.62	7.36	1.88	1.0	3.5	12.0	4.02	8.04	5.64
Merged-chr3-89511061-1	chr3	89510961	89511161	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9103.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	1.62	1.26	0.0	1.21	0.0	4.39	0.33	0.59	1.77	6.03	2.51	1.57
Merged-chr19-36926886-1	chr19	36926786	36926986	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	807.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	4.04	5.03	3.99	2.82	3.27	1.88	1.33	4.32	9.64	7.53	21.1	4.7
Merged-chr2-124720442-1	chr2	124720342	124720542	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66861.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.65	2.01	2.28	2.82	2.05	5.96	1.0	6.31	3.93	0.0	2.01	1.57
Merged-chr13-73996681-1	chr13	73996581	73996781	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-12738.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	5.65	2.01	6.28	5.63	1.23	5.33	5.65	7.43	4.72	0.5	7.03	0.94
Merged-chr17-71618161-1	chr17	71618061	71618261	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175639, intron 1 of 17)	intron (NM_175639, intron 1 of 17)	1946.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	1.21	5.28	3.42	5.63	2.45	6.59	0.66	4.51	12.0	2.01	7.54	6.27
Merged-chr11-94991984-3	chr11	94991855	94992055	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172261, exon 1 of 10)	exon (NM_172261, exon 1 of 10)	743.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	9.69	9.06	7.42	5.23	0.82	10.03	9.3	3.7	6.69	5.52	3.52	9.4
Merged-chr18-70482115-1	chr18	70482015	70482215	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	9449.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	1.21	1.51	1.14	1.61	9.0	5.02	2.99	6.28	3.93	1.51	2.51	2.82
Merged-chr9-59292364-1	chr9	59292264	59292464	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	792.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	7.67	6.54	3.42	6.44	6.14	5.64	3.65	7.74	10.23	8.54	8.04	5.95
Merged-chr19-37698906-2	chr19	37698799	37698999	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007811, exon 3 of 7)	exon (NM_007811, exon 3 of 7)	1091.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	8.48	12.07	2.28	7.24	6.55	14.42	4.32	4.43	1.97	4.02	4.52	4.39
Merged-chr8-71707969-2	chr8	71707860	71708060	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028715)	TTS (NM_028715)	-6160.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	8.08	7.8	3.42	10.46	4.91	9.72	3.32	3.87	13.96	7.03	10.05	4.39
Merged-chr11-76622299-1	chr11	76622199	76622399	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-44560.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.44	5.03	2.85	3.62	3.27	8.15	6.31	5.94	10.82	3.51	7.54	3.45
Merged-chr9-65038866-1	chr9	65038766	65038966	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028906, intron 3 of 20)	Lx5|LINE|L1	6408.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	1.62	5.79	7.42	4.83	2.45	3.76	5.98	9.36	6.49	5.52	3.01	1.88
Merged-chr7-122466396-1	chr7	122466296	122466496	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	B1F|SINE|Alu	177271.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.04	2.01	1.71	2.01	2.05	5.33	1.33	2.05	3.93	7.53	8.04	2.82
Merged-chr10-112801746-1	chr10	112801646	112801846	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36006.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	2.83	3.52	2.28	7.64	3.27	4.08	4.65	8.07	6.49	5.02	3.52	2.19
Merged-chr8-75098518-2	chr8	75098410	75098610	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4892.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.46	6.04	0.57	0.8	7.77	8.15	4.65	5.41	12.59	16.07	5.02	8.46
Merged-chr16-90868345-1	chr16	90868245	90868445	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199210, intron 2 of 7)	intron (NM_001199210, intron 2 of 7)	37486.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	6.46	3.02	5.7	2.01	7.36	3.45	4.65	4.99	5.31	1.51	3.52	3.76
Merged-chr11-54737054-1	chr11	54736954	54737154	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	RSINE1|SINE|B4	50649.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.63	1.51	4.56	4.42	8.59	10.66	3.32	5.83	4.72	5.02	7.03	2.19
Merged-chr17-84037969-1	chr17	84037869	84038069	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39417.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	3.23	5.53	0.0	0.0	3.27	1.25	4.32	5.13	2.75	4.02	3.01	0.63
Merged-chr3-145107063-1	chr3	145106963	145107163	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA7|LINE|L1	-7957.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	1.62	2.52	0.0	0.8	3.27	0.63	6.98	4.46	2.56	5.02	4.02	2.51
Merged-chr15-77799634-3	chr15	77799555	77799755	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	42520.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	9.29	4.78	11.98	8.45	11.86	3.45	1.99	5.47	10.42	7.53	8.54	7.21
Merged-chr8-82992285-1	chr8	82992185	82992385	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	128929.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.23	0.5	0.0	0.0	4.91	1.88	0.0	3.25	13.37	8.03	9.04	5.95
Merged-chr3-149118788-2	chr3	149118683	149118883	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155954.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.4	6.04	7.42	10.86	7.36	4.08	3.65	8.33	1.97	1.0	1.0	1.25
Merged-chr8-14678092-1	chr8	14677992	14678192	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-210444.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.4	2.52	2.85	2.41	4.5	9.72	6.98	2.89	2.36	4.52	5.53	3.13
Merged-chr12-56429552-1	chr12	56429452	56429652	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83658.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	2.83	1.51	6.85	5.63	7.36	6.59	3.32	10.99	5.31	4.52	7.54	5.95
Merged-chr17-84194471-1	chr17	84194371	84194571	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-6524.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.65	6.54	1.14	0.8	4.09	2.82	5.31	5.27	2.16	2.51	0.5	2.51
Merged-chr13-24318859-1	chr13	24318759	24318959	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8545.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	12.11	6.29	3.99	6.03	7.36	6.27	7.64	5.33	4.13	7.03	5.02	7.83
Merged-chr11-102393400-1	chr11	102393300	102393500	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_016759)	promoter-TSS (NM_016759)	-3.0	NM_016759	51799.0	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	9.69	9.31	5.7	8.04	6.95	5.96	2.99	0.7	5.31	16.07	4.52	3.45
Merged-chr5-88628723-1	chr5	88628623	88628823	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359208, intron 8 of 13)	B1_Mur1|SINE|Alu	45210.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	4.44	6.29	3.42	6.84	6.55	3.76	5.98	13.57	8.06	7.03	8.54	13.47
Merged-chr1-58296471-1	chr1	58296371	58296571	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008419, intron 10 of 35)	intron (NM_001008419, intron 10 of 35)	18145.0	NM_001008419	213043.0	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	8.08	5.79	2.28	5.23	4.09	8.15	3.99	5.36	6.1	2.51	14.57	4.39
Merged-chr2-79302613-2	chr2	79302506	79302706	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010576, intron 16 of 27)	intron (NM_010576, intron 16 of 27)	47180.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.27	6.04	12.55	9.65	6.14	6.59	6.98	7.96	8.46	1.51	8.04	14.41
Merged-chr1-152424907-3	chr1	152424815	152425015	+	659.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	25048.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	9.69	10.31	7.99	4.02	11.05	11.92	5.31	7.99	7.08	7.03	13.06	2.19
Merged-chr9-59680171-3	chr9	59680096	59680296	+	659.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011099)	TTS (NM_011099)	23828.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	5.25	7.29	5.13	7.64	15.14	12.23	7.31	6.25	9.83	12.55	14.57	2.19
Merged-chr1-16079231-3	chr1	16079129	16079329	+	659.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305227, intron 3 of 5)	intron (NM_001305227, intron 3 of 5)	14096.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	4.04	5.28	7.99	8.85	6.14	5.96	6.64	10.49	7.28	12.55	14.07	9.4
Merged-chr18-60625400-4	chr18	60625273	60625473	+	659.854187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1068.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	2.83	5.28	1.71	10.05	5.73	5.02	6.64	3.79	4.72	1.51	4.02	5.64
Merged-chr2-32574977-2	chr2	32574890	32575090	+	659.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198191)	promoter-TSS (NM_198191)	-728.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	6.46	10.82	4.56	4.02	6.95	20.7	4.65	6.67	5.31	11.55	11.05	12.22
Merged-chr2-156344970-2	chr2	156344867	156345067	+	659.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-32263.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	9.29	9.81	12.55	4.83	9.82	12.54	1.33	6.45	1.38	3.01	4.52	6.58
Merged-chr15-68077600-2	chr15	68077481	68077681	+	659.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181275.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.86	5.03	5.7	4.42	7.36	8.78	5.65	3.17	3.93	7.03	10.05	5.33
Merged-chr14-45687356-3	chr14	45687252	45687452	+	659.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29209.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.86	8.55	2.28	6.84	14.73	5.64	1.33	8.66	10.82	9.04	11.05	5.64
Merged-chr6-83600067-3	chr6	83599990	83600190	+	659.777771	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27586.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	4.85	0.5	8.56	5.63	4.91	3.45	1.66	7.71	3.54	4.02	8.04	3.76
Merged-chr15-58818235-3	chr15	58818156	58818356	+	659.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	5171.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.04	3.77	12.55	10.46	8.59	2.82	6.98	16.63	7.28	8.54	4.52	8.14
Merged-chr15-33687836-2	chr15	33687705	33687905	+	659.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085421)	promoter-TSS (NM_001085421)	78.0	NM_001085421	239364.0	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	2.02	2.26	0.57	2.41	7.77	5.64	0.66	4.07	6.49	6.53	9.55	7.52
Merged-chr16-62858166-2	chr16	62858072	62858272	+	659.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011173, intron 1 of 14)	MTE-int|LTR|ERVL-MaLR	3865.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	6.06	3.52	3.42	2.01	6.95	2.82	2.99	7.57	10.42	7.03	10.05	6.27
Merged-chr10-111163951-2	chr10	111163850	111164050	+	659.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-852.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.65	6.04	1.14	6.84	9.0	5.96	2.99	8.19	7.87	4.52	4.02	2.51
Merged-chr17-34420172-1	chr17	34420072	34420272	+	659.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001177, intron 5 of 19)	intron (NM_001001177, intron 5 of 19)	21352.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	5.25	3.27	7.99	0.4	0.82	5.96	1.33	1.12	9.83	9.54	13.06	7.83
Merged-chr2-44982597-3	chr2	44982446	44982646	+	659.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355289)	TTS (NM_001355289)	40631.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	8.48	3.27	11.98	4.42	2.45	9.41	7.64	3.39	7.67	6.03	8.54	7.52
Merged-chr5-66293740-1	chr5	66293640	66293840	+	659.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302833, intron 10 of 12)	intron (NM_001302833, intron 10 of 12)	32899.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0	4.53	4.56	0.8	3.27	3.14	2.33	6.76	14.16	15.57	12.06	12.22
Merged-chr13-103915871-1	chr13	103915771	103915971	+	659.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	4715.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	2.83	3.02	3.42	2.41	9.0	5.33	7.31	6.53	2.95	6.03	7.03	1.88
Merged-chr16-20718569-1	chr16	20718469	20718669	+	659.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001356423, exon 1 of 5)	5' UTR (NM_001356423, exon 1 of 5)	392.0	NM_001356423	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	4.44	4.78	4.56	7.24	7.77	4.39	6.31	4.46	6.29	7.03	11.05	5.33
Merged-chr15-77538140-3	chr15	77538019	77538219	+	659.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-4804.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	16.15	8.55	6.85	4.83	4.5	4.39	4.65	3.7	30.09	23.6	11.05	11.28
Merged-chr3-90460518-3	chr3	90460424	90460624	+	659.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008727, intron 7 of 21)	intron (NM_008727, intron 7 of 21)	5342.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	11.31	6.04	14.83	10.05	8.18	5.96	5.65	12.08	9.44	7.53	8.54	4.07
Merged-chr11-98036181-2	chr11	98036091	98036291	+	659.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146028)	TTS (NM_146028)	9267.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	8.08	5.79	2.28	2.41	7.36	3.76	4.98	7.65	11.41	14.56	8.54	4.07
Merged-chr16-90186346-3	chr16	90186245	90186445	+	659.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34397.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.86	11.32	3.99	11.26	6.95	5.33	7.31	7.93	5.11	6.03	8.04	4.07
Merged-chr1-165706324-3	chr1	165706242	165706442	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	1752.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.27	9.06	6.28	0.8	6.55	7.53	8.97	4.88	9.44	3.51	8.04	3.45
Merged-chr9-61373008-1	chr9	61372908	61373108	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001083927, exon 1 of 20)	5' UTR (NM_001083927, exon 1 of 20)	642.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.85	11.82	5.13	3.22	4.5	5.33	10.96	4.93	12.0	8.54	7.03	8.46
Merged-chr3-142890630-2	chr3	142890531	142890731	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152127, intron 1 of 1)	MTC|LTR|ERVL-MaLR	8136.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	6.46	1.51	3.42	0.4	14.32	5.64	1.99	4.37	11.6	4.52	16.08	7.83
Merged-chr10-83652556-2	chr10	83652449	83652649	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1a_Mm|LTR|ERVK	-3885.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	9.29	11.57	7.99	2.82	4.91	8.15	8.97	3.76	7.28	4.52	2.51	3.13
Merged-chr12-3284688-1	chr12	3284588	3284788	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	B3A|SINE|B2	25281.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.81	1.51	2.85	2.41	6.14	5.33	2.66	3.48	7.47	9.54	1.51	1.25
Merged-chr19-47374650-2	chr19	47374545	47374745	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 3 of 14)	MLT1K|LTR|ERVL-MaLR	89766.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	8.48	6.79	9.7	5.63	2.45	8.15	2.99	5.75	4.33	7.53	4.52	3.13
Merged-chr6-82902777-2	chr6	82902667	82902867	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-20914.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	12.52	7.8	4.56	5.63	5.73	4.7	5.98	5.19	2.36	2.01	5.53	1.57
Merged-chr2-127087469-1	chr2	127087369	127087569	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026678, intron 5 of 7)	RMER6B|LTR|ERVK	16812.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.44	2.77	4.56	2.41	4.5	7.53	5.31	4.99	7.67	4.52	13.06	4.7
Merged-chr19-61152349-1	chr19	61152249	61152449	+	659.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-11509.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.0	1.26	0.0	0.4	3.27	4.39	2.66	1.35	12.98	7.53	8.54	5.64
Merged-chr7-68093998-2	chr7	68093884	68094084	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	141727.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.65	3.52	4.56	7.64	4.5	4.7	4.65	10.51	3.93	3.01	6.53	4.39
Merged-chrX-130106808-1	chrX	130106708	130106908	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172493, intron 21 of 26)	intron (NM_172493, intron 21 of 26)	357066.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	2.83	5.03	6.28	2.01	5.32	5.33	7.31	5.86	7.47	6.53	4.02	4.07
Merged-chr16-33966389-1	chr16	33966289	33966489	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009471, intron 1 of 5)	intron (NM_009471, intron 1 of 5)	649.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.25	2.01	2.28	3.62	10.64	10.35	5.31	4.91	1.77	9.04	2.01	1.25
Merged-chr8-84937410-2	chr8	84937314	84937514	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019945)	promoter-TSS (NM_019945)	-61.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	8.88	4.28	5.7	9.25	6.55	6.27	5.65	5.58	8.85	12.05	19.09	7.52
Merged-chr7-79831795-1	chr7	79831695	79831895	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008486, intron 15 of 20)	HAL1|LINE|L1	16415.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	8.48	2.52	5.7	6.84	4.5	4.7	3.65	10.57	5.7	8.03	5.53	3.13
Merged-chr2-122161732-1	chr2	122161632	122161832	+	659.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	1032.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	1.21	2.77	1.14	0.0	2.45	0.63	1.66	2.55	11.8	12.05	9.55	3.76
Merged-chr7-140990768-1	chr7	140990668	140990868	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19976.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	4.04	5.53	11.98	11.66	5.73	2.2	6.31	8.21	6.29	3.01	14.07	3.45
Merged-chr1-43478072-1	chr1	43477972	43478172	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	32321.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.63	2.77	1.14	1.61	6.55	2.82	9.63	6.2	4.13	7.03	8.54	4.7
Merged-chr16-89833759-1	chr16	89833659	89833859	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 14 of 27)	intron (NM_009384, intron 14 of 27)	-15407.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.42	4.78	4.56	7.24	6.95	5.33	1.99	5.24	2.75	1.51	6.53	4.39
Merged-chr6-97368292-1	chr6	97368192	97368392	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	90994.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.81	3.77	4.56	3.62	3.27	7.21	5.31	5.44	4.52	2.51	5.02	7.21
Merged-chr13-62470124-2	chr13	62470027	62470227	+	659.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3315.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	8.08	11.07	4.56	6.44	3.27	3.14	1.0	3.84	10.62	14.56	7.03	9.08
Merged-chr15-77752735-2	chr15	77752615	77752815	+	659.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357895, intron 3 of 3)	intron (NM_001357895, intron 3 of 3)	2558.0	NM_001357896	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	7.27	4.28	7.99	6.03	4.5	6.59	4.98	6.28	10.03	6.53	9.55	7.52
Merged-chr19-34241423-2	chr19	34241326	34241526	+	659.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007392, exon 9 of 9)	3' UTR (NM_007392, exon 9 of 9)	8801.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.65	7.04	3.42	1.61	5.73	2.51	2.33	5.86	13.37	19.58	10.05	8.77
Merged-chr6-125081998-2	chr6	125081885	125082085	+	659.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163269, exon 2 of 2)	exon (NM_001163269, exon 2 of 2)	10708.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	3.63	5.53	3.42	2.82	10.64	7.21	3.99	5.38	8.65	11.55	13.06	9.4
Merged-chr12-117820297-2	chr12	117820205	117820405	+	659.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23556.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	8.48	7.55	2.28	8.45	9.0	9.41	1.0	6.98	4.33	3.01	10.05	5.95
Merged-chr16-30598756-2	chr16	30598656	30598856	+	659.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-967.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	10.09	8.05	2.28	9.65	4.09	5.96	2.99	7.54	5.7	7.03	3.52	5.64
Merged-chr17-23741032-1	chr17	23740932	23741132	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-702.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	10.09	5.03	10.84	11.66	2.45	3.14	6.64	6.48	5.11	8.54	5.53	7.21
Merged-chr7-59163096-1	chr7	59162996	59163196	+	659.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-65654.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.4	8.3	5.7	6.44	9.82	8.47	8.3	5.75	13.18	9.04	9.55	1.88
Merged-chr1-58953921-3	chr1	58953829	58954029	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172406, intron 1 of 15)	intron (NM_172406, intron 1 of 15)	19553.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	4.85	8.05	6.85	10.46	6.14	11.6	5.65	19.04	8.06	3.51	17.08	9.4
Merged-chr14-30617446-1	chr14	30617346	30617546	+	659.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-7136.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.83	4.28	7.42	3.22	9.41	9.41	6.64	4.96	6.1	7.03	7.54	2.19
Merged-chr10-16751716-3	chr10	16751623	16751823	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	344059.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	10.09	1.01	10.84	13.27	13.91	10.66	14.28	18.9	10.62	6.53	12.06	7.21
Merged-chr3-118562152-1	chr3	118562052	118562252	+	659.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_170778)	promoter-TSS (NM_170778)	-28.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	1.62	0.0	1.14	3.22	5.32	3.45	2.66	6.53	3.34	2.51	2.51	4.07
Merged-chr16-46022752-3	chr16	46022652	46022852	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12339.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	8.08	7.29	3.42	6.44	10.23	9.72	8.64	8.44	11.8	14.06	6.53	5.95
Merged-chr17-43606931-2	chr17	43606836	43607036	+	659.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 9 of 11)	B3A|SINE|B2	-15427.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	8.48	4.28	3.42	4.83	4.91	9.41	5.98	4.32	8.46	12.05	9.04	4.07
Merged-chr4-140971827-2	chr4	140971725	140971925	+	659.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 3 of 7)	intron (NM_001355515, intron 3 of 7)	10554.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	8.88	6.29	4.56	0.8	7.36	8.47	2.99	2.69	13.37	7.53	12.06	8.46
Merged-chr3-87528916-2	chr3	87528815	87529015	+	659.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	3337.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.86	8.8	11.98	5.63	5.73	8.15	0.33	4.54	2.56	0.0	4.02	1.88
Merged-chr16-62856501-3	chr16	62856399	62856599	+	659.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	2192.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	8.08	8.55	2.28	8.04	7.36	5.64	5.31	12.2	14.16	18.58	19.6	7.52
Merged-chrX-106219639-2	chrX	106219515	106219715	+	659.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167988, exon 2 of 8)	exon (NM_001167988, exon 2 of 8)	227.0	NM_001001176	407786.0	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	5.25	1.01	4.56	0.8	14.32	4.7	8.64	3.73	7.08	5.52	6.53	12.22
Merged-chr5-32013576-2	chr5	32013477	32013677	+	659.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-122895.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.27	5.28	10.27	10.05	2.45	11.92	4.98	6.95	7.87	8.03	10.05	7.52
Merged-chr8-34817841-3	chr8	34817759	34817959	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10249.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.23	4.02	10.27	9.25	7.77	5.33	3.65	7.68	11.41	6.03	12.06	6.27
Merged-chr3-137823513-3	chr3	137823413	137823613	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39898.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	8.08	8.05	2.85	6.03	6.55	8.47	12.29	11.92	8.65	4.52	12.06	6.58
Merged-chr17-53468672-3	chr17	53468539	53468739	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5318.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	7.27	6.04	10.84	12.07	5.73	7.53	8.97	10.43	6.69	8.54	9.55	10.02
Merged-chr7-47054791-3	chr7	47054697	47054897	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026436)	TTS (NM_026436)	4157.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	2.02	7.29	11.98	2.82	4.5	6.59	6.64	10.79	9.64	1.0	6.03	4.39
Merged-chr11-73186231-3	chr11	73186139	73186339	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357891, intron 10 of 11)	intron (NM_001357891, intron 10 of 11)	9156.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	3.23	5.79	3.42	4.02	3.68	1.25	5.65	1.79	4.72	6.03	9.55	6.27
Merged-chr4-133206027-2	chr4	133205954	133206154	+	659.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6482.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	9.29	10.31	7.99	4.42	5.32	5.33	3.65	5.66	6.1	4.52	9.04	2.19
Merged-chr15-93335952-2	chr15	93335850	93336050	+	659.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	985.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	10.09	13.33	2.85	3.62	6.95	13.17	4.32	5.19	7.67	8.54	3.01	10.34
Merged-chr12-100397247-1	chr12	100397147	100397347	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120638.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.23	9.81	6.85	3.22	6.95	10.98	4.32	3.06	10.03	7.53	5.53	5.01
Merged-chr3-89093375-1	chr3	89093275	89093475	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001083807)	promoter-TSS (NM_001083807)	-12.0	NM_028188	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	8.88	3.02	7.99	4.83	6.95	8.15	2.66	6.87	5.9	4.02	3.52	10.65
Merged-chr6-6307789-1	chr6	6307689	6307889	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	59130.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	1.61	4.91	5.02	6.98	7.91	0.39	3.01	0.0	1.88
Merged-chr5-34230814-1	chr5	34230714	34230914	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-43104.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.63	3.27	6.85	3.62	5.32	2.2	2.99	5.94	6.1	6.53	1.51	0.63
Merged-chr9-109932471-1	chr9	109932371	109932571	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205332, intron 1 of 17)	CpG	697.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	3.23	2.52	1.14	4.02	10.64	3.45	8.64	5.64	5.31	6.03	8.04	4.39
Merged-chr13-120259080-1	chr13	120258980	120259180	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4015.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	8.88	2.77	6.85	0.8	0.82	1.25	3.32	2.72	7.28	0.0	8.04	3.13
Merged-chr10-57842002-1	chr10	57841902	57842102	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47458.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.27	6.29	1.14	5.23	5.32	7.21	4.32	2.33	5.51	7.03	6.53	3.45
Merged-chr6-142831467-1	chr6	142831367	142831567	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045707, intron 6 of 6)	intron (NR_045707, intron 6 of 6)	17236.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	2.42	5.03	4.56	6.44	8.18	7.21	7.64	5.72	5.7	5.02	6.03	2.51
Merged-chr10-10320535-1	chr10	10320435	10320635	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	151779.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.42	2.26	0.0	0.8	2.45	3.14	6.31	4.01	1.57	0.0	0.0	0.31
Merged-chr6-115375072-2	chr6	115374979	115375179	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	L3|LINE|CR1	12730.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	14.13	8.05	5.7	9.25	10.64	5.02	3.65	4.49	10.23	6.53	7.03	11.28
Merged-chr2-165075074-1	chr2	165074974	165075174	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15676.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	7.67	2.26	2.85	3.62	1.64	8.47	0.33	4.29	8.85	6.03	13.57	5.01
Merged-chr2-102002536-1	chr2	102002436	102002636	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	116274.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	1.62	0.5	0.0	0.0	0.0	1.25	0.0	0.36	10.42	9.54	13.06	4.07
Merged-chr4-132063216-1	chr4	132063116	132063316	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	L2a|LINE|L2	8881.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	1.62	1.51	11.41	3.22	3.68	4.7	4.65	6.53	2.95	0.5	3.01	1.57
Merged-chr2-36237279-1	chr2	36237179	36237379	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008969, exon 3 of 11)	exon (NM_008969, exon 3 of 11)	6853.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.23	1.51	0.57	1.61	3.27	5.02	3.65	3.11	3.54	3.01	3.01	2.19
Merged-chr5-21372071-1	chr5	21371971	21372171	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	-602.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	2.83	4.28	10.27	6.03	3.27	5.33	2.33	9.28	9.83	6.03	6.03	10.65
Merged-chr13-43492842-2	chr13	43492761	43492961	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11888.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	6.86	4.53	3.99	5.63	6.95	12.54	8.64	4.04	8.06	9.04	10.55	1.88
Merged-chr16-90710525-1	chr16	90710425	90710625	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16846.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	1.62	3.77	1.14	2.41	5.32	4.39	6.98	5.41	4.33	4.52	5.02	2.19
Merged-chr4-53409756-1	chr4	53409656	53409856	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30657.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	1.21	1.51	2.28	0.4	8.59	9.41	4.32	1.91	3.93	15.06	6.53	0.63
Merged-chr8-105345788-1	chr8	105345688	105345888	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2182.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.86	5.79	2.28	2.41	6.14	4.7	4.32	5.3	3.74	4.02	2.01	4.7
Merged-chr10-62896081-2	chr10	62895996	62896196	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8772.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	2.83	5.28	5.7	4.83	6.14	6.9	3.99	9.03	7.28	1.0	2.51	9.71
Merged-chr5-138193909-1	chr5	138193809	138194009	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	-405.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	5.65	3.02	1.71	5.23	3.27	6.9	3.99	7.65	2.56	2.01	1.0	6.89
Merged-chr2-59163005-1	chr2	59162905	59163105	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	2155.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	1.62	0.75	3.42	2.01	0.82	10.66	0.0	5.27	0.39	2.51	4.52	6.27
Merged-chr14-21877581-1	chr14	21877481	21877681	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-28671.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	3.68	2.51	6.31	5.92	0.0	0.5	1.51	0.63
Merged-chr17-13146496-1	chr17	13146396	13146596	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-14705.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	2.42	4.02	3.42	4.02	9.0	8.78	8.97	0.98	9.44	7.53	2.51	3.13
Merged-chr13-8780654-2	chr13	8780567	8780767	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	90377.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.81	2.01	2.28	2.01	5.73	3.76	3.99	5.78	6.49	13.05	11.56	1.57
Merged-chr5-24053452-1	chr5	24053352	24053552	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22762.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.04	3.27	9.13	4.83	4.91	6.9	3.99	5.64	4.72	5.02	5.53	11.28
Merged-chr10-39240054-1	chr10	39239954	39240154	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76260.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	6.46	4.02	5.13	2.41	8.18	8.78	1.66	6.73	6.1	7.53	7.03	4.7
Merged-chr5-142797832-1	chr5	142797732	142797932	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	19555.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.63	7.04	7.42	1.21	5.32	9.09	4.32	4.93	14.95	0.5	6.03	4.39
Merged-chr7-4845218-1	chr7	4845118	4845318	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172737)	promoter-TSS (NM_172737)	-522.0	NM_172737	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	10.9	1.76	5.13	7.24	4.09	0.0	3.99	5.3	3.54	5.02	2.51	3.45
Merged-chr2-11532358-1	chr2	11532258	11532458	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	21571.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	9.69	4.78	5.13	0.8	4.5	5.64	4.65	4.77	8.06	4.52	3.52	6.58
Merged-chr3-144676505-1	chr3	144676405	144676605	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43830.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	1.62	0.75	0.0	0.8	0.41	0.63	0.0	0.03	14.16	7.53	7.54	5.33
Merged-chr18-49772581-1	chr18	49772481	49772681	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16980.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	2.02	2.01	9.13	2.82	0.41	4.39	3.99	5.78	8.26	0.5	7.54	4.39
Merged-chr4-3089724-1	chr4	3089624	3089824	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-82359.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	4.04	1.01	2.28	4.02	5.73	2.2	4.98	2.1	1.57	2.01	1.51	0.94
Merged-chr11-110961919-1	chr11	110961819	110962019	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6114.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.23	4.02	0.0	2.41	6.55	2.51	0.66	4.91	6.1	3.01	3.01	3.13
Merged-chr8-106343042-1	chr8	106342942	106343142	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5054.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	8.08	2.52	7.99	10.86	5.73	7.21	3.32	6.36	9.05	6.53	8.54	3.13
Merged-chr18-38425145-1	chr18	38425045	38425245	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	B4A|SINE|B4	6238.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.85	0.25	6.85	6.44	4.09	5.96	1.66	6.0	1.57	2.01	5.02	0.94
Merged-chr6-17516213-1	chr6	17516113	17516313	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	52256.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.0	2.77	1.14	0.8	7.77	0.94	3.65	5.75	0.2	2.01	0.5	1.25
Merged-chr4-141721324-1	chr4	141721224	141721424	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	2095.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.04	1.26	1.14	2.82	4.09	3.14	6.64	4.54	2.95	2.01	2.01	2.19
Merged-chr1-84943812-1	chr1	84943712	84943912	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8729.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	1.62	1.01	1.14	4.02	5.73	2.82	1.99	6.08	0.39	0.0	1.51	2.19
Merged-chr4-150248253-2	chr4	150248154	150248354	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 11 of 11)	intron (NM_023119, intron 11 of 11)	10930.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.04	5.79	2.85	6.44	5.32	6.27	4.32	5.97	7.47	5.52	16.08	9.4
Merged-chr4-148662308-1	chr4	148662208	148662408	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085505, intron 5 of 10)	intron (NM_001085505, intron 5 of 10)	18991.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	6.46	3.27	5.13	4.42	7.36	7.53	3.99	6.08	19.28	5.52	8.54	6.27
Merged-chr16-24935475-1	chr16	24935375	24935575	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	B3A|SINE|B2	-124164.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.44	1.76	3.42	4.42	6.14	2.2	3.65	7.18	2.75	3.51	5.53	3.76
Merged-chr10-56369366-3	chr10	56369224	56369424	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7976.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	4.85	3.02	3.42	4.83	6.95	4.39	7.64	8.41	12.19	13.05	6.53	5.95
Merged-chr16-87635057-2	chr16	87634951	87635151	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-63903.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.81	6.54	3.42	2.82	2.05	3.76	5.31	3.48	4.33	2.51	4.52	6.27
Merged-chr3-54764660-1	chr3	54764560	54764760	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019483, intron 1 of 5)	intron (NM_019483, intron 1 of 5)	9078.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.0	0.0	0.0	0.4	2.45	8.78	0.0	7.74	4.72	0.0	6.03	4.07
Merged-chr18-32204942-2	chr18	32204843	32205043	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011946, intron 7 of 16)	intron (NM_011946, intron 7 of 16)	-35388.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	6.86	4.78	10.27	10.05	8.18	6.9	2.99	8.64	9.44	4.52	8.04	8.77
Merged-chr11-54485182-1	chr11	54485082	54485282	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-37663.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.81	0.5	2.28	3.22	3.68	3.76	6.64	4.37	2.75	2.01	8.54	5.95
Merged-chr14-48459553-2	chr14	48459441	48459641	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	13189.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	2.02	8.05	7.42	5.63	6.14	6.27	6.98	7.01	2.56	3.51	4.52	1.88
Merged-chr19-21139202-1	chr19	21139102	21139302	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34492.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.81	6.54	5.7	4.02	4.09	8.15	6.98	5.36	4.33	6.03	10.05	4.39
Merged-chr7-113518329-1	chr7	113518229	113518429	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	4495.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.81	3.27	2.85	2.41	2.45	4.7	4.98	6.11	6.49	3.51	5.02	5.33
Merged-chr19-32172524-1	chr19	32172424	32172624	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	ORR1C2|LTR|ERVL-MaLR	38489.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.81	0.5	2.28	0.8	2.86	3.76	2.33	5.1	2.36	5.02	3.01	2.51
Merged-chr6-108753699-1	chr6	108753599	108753799	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29360.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	7.27	4.78	6.28	8.45	6.95	8.78	4.65	5.41	6.69	5.02	4.02	3.45
Merged-chr8-83106183-2	chr8	83106093	83106293	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-59159.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.46	6.79	19.4	12.87	8.18	7.53	10.63	4.99	10.23	1.51	0.0	3.76
Merged-chr11-115670726-1	chr11	115670626	115670826	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28808.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	2.42	2.01	4.56	2.82	2.45	6.27	0.66	5.83	2.56	4.52	6.53	3.76
Merged-chr9-20757220-1	chr9	20757120	20757320	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10924.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	6.06	1.01	9.13	4.83	0.82	4.08	4.32	6.64	7.28	3.01	8.04	11.28
Merged-chr19-9985809-2	chr19	9985698	9985898	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010239)	TTS (NM_010239)	3152.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.25	7.29	2.85	2.41	6.14	9.09	4.32	4.09	8.85	5.02	2.51	6.27
Merged-chr18-44400601-1	chr18	44400501	44400701	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027490, intron 4 of 10)	B3|SINE|B2	20101.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	1.21	4.28	9.7	3.22	4.91	3.45	5.98	5.24	3.34	2.51	5.53	4.07
Merged-chr12-35539208-1	chr12	35539108	35539308	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4219.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.46	2.52	5.7	10.86	6.55	3.14	4.32	14.33	4.33	5.52	7.54	4.39
Merged-chr9-106289050-1	chr9	106288950	106289150	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	7989.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.63	5.53	5.13	4.83	7.36	5.64	1.66	3.98	8.26	5.52	10.05	4.7
Merged-chr11-118360757-2	chr11	118360656	118360856	+	658.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5345.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	8.08	7.29	2.85	2.41	7.77	7.21	7.97	6.67	6.29	0.5	5.53	3.45
Merged-chr11-100362692-3	chr11	100362593	100362793	+	658.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6552.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	9.29	9.81	0.57	2.82	5.73	7.84	13.62	6.7	6.1	3.01	7.03	8.46
Merged-chr10-79986580-3	chr10	79986456	79986656	+	658.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2044.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	4.85	7.55	4.56	5.23	6.55	7.21	1.33	4.4	10.42	9.04	6.03	12.22
Merged-chr15-78254989-1	chr15	78254889	78255089	+	658.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008677, intron 5 of 9)	intron (NM_008677, intron 5 of 9)	10178.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.25	4.53	9.13	4.02	7.77	9.72	9.63	5.75	4.52	6.53	5.53	2.82
Merged-chr9-121759812-2	chr9	121759669	121759869	+	658.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166644)	promoter-TSS (NM_001166644)	174.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	3.63	4.28	7.42	6.44	2.86	10.66	3.32	4.88	4.13	8.54	1.51	5.01
Merged-chr15-91260680-2	chr15	91260574	91260774	+	658.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68667.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	10.5	6.29	6.85	10.05	5.73	8.78	9.97	6.48	5.9	2.51	10.05	2.82
Merged-chr2-28478826-2	chr2	28478712	28478912	+	658.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10746.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	9.29	3.27	11.41	4.02	6.55	7.53	6.64	6.36	4.52	6.53	4.52	3.13
Merged-chr7-142094741-2	chr7	142094541	142094741	+	658.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008748, intron 1 of 6)	CpG	643.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	1.62	6.54	3.42	3.62	5.32	10.35	5.65	5.3	6.29	9.04	3.01	4.07
Merged-chr10-127593655-1	chr10	127593555	127593755	+	658.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 9 of 88)	intron (NM_008512, intron 9 of 88)	27493.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.06	7.29	3.99	3.62	4.91	4.08	5.98	3.98	6.49	5.52	6.03	5.33
Merged-chr10-62511664-1	chr10	62511564	62511764	+	658.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 1 of 3)	intron (NM_001358965, intron 1 of 3)	-3907.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.04	4.02	9.7	4.83	4.09	4.08	9.3	6.9	5.31	4.02	10.55	5.95
Merged-chr15-80043472-1	chr15	80043372	80043572	+	658.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28664.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.0	4.28	4.56	0.4	6.14	10.66	11.29	4.6	4.92	3.01	2.01	3.45
Merged-chr16-88483548-2	chr16	88483466	88483666	+	658.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3_Mus|LINE|L1	23412.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	1.62	1.26	3.42	1.21	3.68	11.92	6.31	6.84	9.64	0.5	11.56	5.33
Merged-chr9-65522972-2	chr9	65522878	65523078	+	658.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57109.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	1.21	2.26	0.57	0.4	12.68	3.76	4.65	8.52	17.11	6.03	13.06	5.64
Merged-chr8-124793387-2	chr8	124793282	124793482	+	658.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_198632, exon 1 of 10)	5' UTR (NM_198632, exon 1 of 10)	363.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	7.67	6.04	7.99	8.04	12.68	8.78	7.31	8.94	3.74	2.01	3.52	6.27
Merged-chr15-39362255-2	chr15	39362136	39362336	+	658.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 5 of 26)	intron (NM_053271, intron 5 of 26)	163950.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	6.86	2.01	3.42	2.01	6.95	9.09	11.63	7.82	12.39	8.03	7.03	5.01
Merged-chr19-11786965-3	chr19	11786873	11787073	+	658.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16558.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.0	3.77	7.42	6.03	4.5	4.39	3.65	4.04	1.97	4.02	1.0	1.25
Merged-chr13-37749257-2	chr13	37749153	37749353	+	658.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76785.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.25	6.04	11.41	6.84	6.55	10.03	5.98	8.97	9.24	11.05	12.56	7.21
Merged-chr3-30855138-1	chr3	30855038	30855238	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-812.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	5.25	2.01	3.42	2.01	3.27	8.47	4.32	7.15	3.54	9.04	4.52	6.89
Merged-chr7-68059962-2	chr7	68059863	68060063	+	658.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	107706.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	6.86	7.8	5.7	10.46	2.05	3.45	5.31	12.59	5.31	7.53	8.04	3.13
Merged-chr10-37335285-2	chr10	37335183	37335383	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-196357.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.83	2.26	5.7	2.82	6.14	4.39	7.64	6.95	10.03	7.03	3.01	3.45
Merged-chr2-72201832-1	chr2	72201732	72201932	+	658.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.02	0.0	0.0	0.4	1.23	0.31	2.33	0.76	5.31	6.03	9.04	6.27
Merged-chr10-84514317-2	chr10	84514222	84514422	+	658.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19566.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	12.11	3.02	3.42	10.46	2.05	9.41	1.33	5.69	7.67	12.55	10.05	6.27
Merged-chr8-84928835-2	chr8	84928745	84928945	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019945, intron 6 of 25)	intron (NM_019945, intron 6 of 25)	8508.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	7.27	3.02	6.28	1.61	4.09	5.33	1.99	5.92	14.16	8.54	8.54	7.83
Merged-chr12-85364626-1	chr12	85364526	85364726	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	MTD|LTR|ERVL-MaLR	10091.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.44	1.51	3.42	1.61	6.95	12.23	4.65	4.82	7.67	6.03	12.56	2.82
Merged-chr5-149641866-1	chr5	149641766	149641966	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5530.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	1.21	1.26	1.14	0.8	7.36	5.96	2.66	6.76	6.1	5.52	9.55	2.51
Merged-chr12-16896266-2	chr12	16896178	16896378	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	1300.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.85	4.78	8.56	9.65	9.82	9.09	3.65	5.19	9.05	12.55	10.55	5.95
Merged-chr10-61344221-2	chr10	61344115	61344315	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 10 of 19)	intron (NM_013753, intron 10 of 19)	39308.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	8.48	2.77	5.7	5.63	2.45	3.76	6.98	6.81	6.49	8.54	10.55	4.7
Merged-chr17-71529218-1	chr17	71529118	71529318	+	658.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2361.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.81	0.75	1.14	0.0	0.0	1.88	1.33	1.68	8.26	2.01	9.55	5.95
Merged-chr19-46553765-1	chr19	46553665	46553865	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355233, intron 2 of 6)	intron (NM_001355233, intron 2 of 6)	19417.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.4	4.02	9.13	2.41	8.18	5.64	1.33	9.0	4.92	2.51	9.55	8.46
Merged-chr18-53179086-2	chr18	53179010	53179210	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	2818.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.04	5.03	2.28	7.64	2.86	2.51	7.64	4.96	4.52	2.01	7.54	6.27
Merged-chr2-79339245-2	chr2	79339158	79339358	+	658.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001048176, intron 10 of 12)	intron (NM_001048176, intron 10 of 12)	83832.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	1.62	7.8	9.13	3.62	8.18	6.9	3.99	5.38	5.51	3.51	4.02	4.07
Merged-chr18-84683755-3	chr18	84683665	84683865	+	658.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 1 of 11)	B2_Mm2|SINE|B2	-1706.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	6.46	7.04	13.69	5.63	2.86	8.78	6.31	3.76	10.42	8.54	19.09	11.9
Merged-chr17-35591065-2	chr17	35590972	35591172	+	658.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23587.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	4.04	14.59	7.42	8.45	6.55	13.17	4.98	6.9	4.13	4.52	5.02	3.76
Merged-chr1-6492980-1	chr1	6492880	6493080	+	658.400024	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	5749.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	8.88	8.3	22.82	12.87	0.82	4.08	3.32	7.43	4.92	2.01	12.06	2.82
Merged-chr13-55465975-3	chr13	55465827	55466027	+	658.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1660.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	8.48	9.06	9.7	9.25	11.86	2.51	6.31	2.5	10.03	13.05	6.53	5.95
Merged-chr12-3808377-3	chr12	3808413	3808613	+	658.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	1353.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.85	4.53	5.13	2.82	1.64	10.35	9.3	4.77	2.75	10.54	7.03	7.83
Merged-chr2-38351017-2	chr2	38350934	38351134	+	658.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010710)	promoter-TSS (NM_010710)	-274.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	6.86	8.3	11.41	10.05	4.5	6.27	1.33	6.84	3.74	3.01	4.02	8.77
Merged-chr2-28440998-2	chr2	28440900	28441100	+	658.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-6941.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	4.04	4.53	9.7	7.64	6.95	6.27	3.99	4.71	13.57	8.03	5.02	8.14
Merged-chr5-150156221-2	chr5	150156113	150156313	+	658.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-103717.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.42	4.53	5.7	1.21	2.45	10.66	2.66	5.64	7.08	8.03	16.58	7.83
Merged-chr1-125432616-3	chr1	125432510	125432710	+	658.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	3117.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	13.33	9.31	4.56	5.23	6.95	11.92	2.66	2.41	8.46	12.05	5.53	6.58
Merged-chr12-57243824-1	chr12	57243724	57243924	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	13399.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.44	5.28	6.85	5.63	9.0	5.64	6.98	6.06	5.31	9.54	6.03	4.39
Merged-chr5-123245751-1	chr5	123245651	123245851	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026000, intron 4 of 5)	intron (NM_026000, intron 4 of 5)	17561.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	3.23	5.53	5.7	0.0	6.95	7.21	4.65	6.64	0.79	3.01	6.03	1.57
Merged-chr9-95571119-1	chr9	95571019	95571219	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	11302.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.85	4.78	1.71	3.22	7.77	10.35	5.65	7.4	11.01	3.51	9.55	5.01
Merged-chr1-132067995-1	chr1	132067895	132068095	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172510)	promoter-TSS (NM_172510)	67.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	6.86	11.57	3.42	3.62	9.41	7.21	5.31	6.2	6.1	7.53	9.55	4.39
Merged-chr15-83112971-1	chr15	83112871	83113071	+	658.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023475, intron 9 of 11)	intron (NM_023475, intron 9 of 11)	9830.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.81	6.79	1.71	2.82	4.5	1.57	3.65	1.23	4.72	7.03	3.01	5.64
Merged-chr4-9665866-3	chr4	9665766	9665966	+	658.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	3296.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.88	5.03	1.14	7.64	6.55	5.02	5.31	5.78	12.78	7.53	13.57	9.4
Merged-chr4-101367468-3	chr4	101367369	101367569	+	658.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 2 of 3)	intron (NR_040640, intron 2 of 3)	-11221.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	8.88	5.53	3.42	1.21	5.73	8.15	5.65	5.58	12.0	14.06	10.05	5.95
Merged-chr5-30806292-2	chr5	30806207	30806407	+	658.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8334.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.85	5.79	3.42	4.02	10.23	10.03	2.66	7.57	14.55	18.58	10.05	7.83
Merged-chr13-23454099-2	chr13	23453965	23454165	+	658.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11836.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	4.04	4.78	6.85	10.05	2.05	3.14	3.99	5.75	9.05	4.52	9.04	6.89
Merged-chr14-54731594-2	chr14	54731493	54731693	+	658.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 7 of 10)	intron (NM_016972, intron 7 of 10)	-19419.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.23	4.02	5.7	2.41	5.32	5.64	3.32	6.48	12.19	5.52	13.06	8.14
Merged-chr1-138506860-2	chr1	138506780	138506980	+	658.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	112877.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	7.27	3.02	7.99	8.85	9.41	9.09	3.99	9.93	6.29	7.03	17.59	5.64
Merged-chr3-65818797-2	chr3	65818684	65818884	+	658.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166659, intron 11 of 12)	intron (NM_001166659, intron 11 of 12)	139465.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.85	3.77	5.7	8.04	1.23	5.64	3.99	7.26	8.46	18.58	5.02	8.77
Merged-chr6-87504154-3	chr6	87504040	87504240	+	658.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-7813.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.06	6.79	5.7	8.45	6.55	7.53	6.64	10.29	8.85	5.02	6.03	6.89
Merged-chr3-105044025-3	chr3	105043925	105044125	+	658.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	8928.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.04	8.8	3.42	10.46	4.5	8.47	5.65	5.44	13.18	0.5	8.04	7.21
Merged-chr1-190944466-3	chr1	190944350	190944550	+	658.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357133, intron 8 of 8)	intron (NM_001357133, intron 8 of 8)	15628.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	9.69	4.02	4.56	13.67	1.64	5.02	7.64	9.79	6.29	5.52	7.03	5.01
Merged-chr9-32500293-3	chr9	32500182	32500382	+	658.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	41170.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	9.29	5.53	11.98	9.25	4.5	7.21	5.65	6.67	8.46	8.03	9.04	4.7
Merged-chr14-56694053-2	chr14	56693956	56694156	+	658.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360072, intron 11 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	6944.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	15.34	23.64	11.41	19.31	4.09	7.53	3.32	0.0	9.44	1.0	13.06	10.96
Merged-chr9-56995604-2	chr9	56995489	56995689	+	658.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019651, exon 1 of 13)	5' UTR (NM_019651, exon 1 of 13)	621.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	6.86	8.3	9.13	4.83	7.77	14.11	1.0	4.15	7.67	10.54	10.55	8.77
Merged-chr1-131181820-2	chr1	131181724	131181924	+	658.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 3 of 5)	intron (NM_018750, intron 3 of 5)	18361.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	8.48	2.26	11.41	7.24	10.23	10.03	3.99	5.55	8.06	5.02	9.04	6.58
Merged-chr5-66090234-3	chr5	66090145	66090345	+	658.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	7934.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.29	10.82	6.85	11.26	9.82	18.5	5.65	7.09	7.67	11.55	9.04	7.52
Merged-chr5-142816853-4	chr5	142816717	142816917	+	658.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	570.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	2.02	4.02	2.28	10.46	2.45	5.02	3.65	5.52	5.11	7.53	5.02	3.76
Merged-chr8-104108082-3	chr8	104107989	104108189	+	658.111145	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	(GA)n|Simple_repeat|Simple_repeat	-2216.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.25	5.53	10.27	4.42	6.95	7.53	4.98	4.04	11.41	3.51	10.55	2.19
Merged-chr11-121342902-2	chr11	121342809	121343009	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025793, intron 2 of 9)	intron (NM_025793, intron 2 of 9)	11538.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	9.69	3.77	9.13	8.85	13.5	6.9	4.32	9.17	5.51	10.04	7.03	3.45
Merged-chr19-37702552-1	chr19	37702452	37702652	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4744.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	4.85	8.3	3.42	5.63	4.09	7.84	2.66	7.57	4.33	2.01	2.51	0.63
Merged-chr9-40815284-1	chr9	40815184	40815384	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	14011.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.44	1.01	0.0	2.41	5.32	7.21	0.33	1.04	8.65	6.03	7.54	1.88
Merged-chr5-125158330-1	chr5	125158230	125158430	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	20884.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.46	4.28	3.42	1.21	6.55	6.27	3.32	6.59	1.97	0.5	0.5	0.0
Merged-chr3-153297944-1	chr3	153297844	153298044	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126464, intron 1 of 1)	intron (NR_126464, intron 1 of 1)	705.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	1.62	2.01	7.99	2.41	4.91	0.94	6.98	4.99	0.2	0.5	3.01	2.82
Merged-chr18-35573549-1	chr18	35573449	35573649	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010771, intron 2 of 14)	intron (NM_010771, intron 2 of 14)	11391.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	6.46	2.01	1.14	2.82	10.64	1.88	5.31	5.66	7.08	5.52	6.53	3.76
Merged-chr8-13493540-1	chr8	13493440	13493640	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	995.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	5.65	6.04	1.14	4.42	3.68	4.7	5.98	5.83	3.93	1.0	8.54	3.76
Merged-chr17-10315074-1	chr17	10314974	10315174	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4287.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	1.62	3.02	0.0	1.61	2.86	6.27	4.32	7.09	5.7	3.01	4.52	5.64
Merged-chr6-87248622-1	chr6	87248522	87248722	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	87153.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	3.63	2.52	1.71	4.83	1.64	1.57	5.31	5.94	2.16	2.01	2.01	3.45
Merged-chr15-99772004-1	chr15	99771904	99772104	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028015, intron 1 of 9)	CpG	511.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	3.63	1.76	5.13	0.8	9.41	2.2	7.31	6.14	6.49	4.52	6.03	5.64
Merged-chr12-99544482-2	chr12	99544376	99544576	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19365.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	4.85	3.02	5.7	12.07	3.27	8.47	0.66	5.72	9.24	13.05	5.02	1.57
Merged-chr17-46891359-1	chr17	46891259	46891459	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178385, exon 1 of 1)	exon (NM_178385, exon 1 of 1)	738.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.86	4.78	3.99	5.23	5.32	7.53	2.99	4.37	5.7	7.03	10.05	12.84
Merged-chr8-117453346-2	chr8	117453248	117453448	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106045)	TTS (NR_106045)	325.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	1.62	6.04	3.42	3.62	1.23	7.84	2.66	3.48	8.26	6.53	7.03	7.52
Merged-chrX-99682717-2	chrX	99682597	99682797	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-138372.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	10.9	1.26	7.99	17.7	2.05	5.02	16.61	6.53	8.65	3.01	7.03	4.39
Merged-chr9-103175001-1	chr9	103174901	103175101	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	27064.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	8.48	3.02	1.14	3.62	6.55	9.72	1.0	6.22	6.88	8.54	14.57	8.46
Merged-chr2-153163138-1	chr2	153163038	153163238	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1837.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	9.29	4.53	2.28	0.8	6.95	18.19	2.99	3.2	14.95	8.03	5.02	7.52
Merged-chr4-82876891-1	chr4	82876791	82876991	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8260.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	10.09	5.03	7.99	5.63	6.55	3.14	8.64	6.81	0.98	3.01	0.0	0.63
Merged-chr16-11824257-1	chr16	11824157	11824357	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146067, intron 3 of 3)	intron (NM_146067, intron 3 of 3)	44555.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	3.63	3.52	4.56	4.83	3.27	2.2	2.99	3.31	8.26	2.01	10.05	5.64
Merged-chr11-50200879-1	chr11	50200779	50200979	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026543)	TTS (NM_026543)	9941.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	1.62	6.79	3.42	0.0	8.59	10.35	0.33	0.59	5.51	4.02	0.0	0.94
Merged-chr5-65776791-1	chr5	65776691	65776891	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024917, intron 3 of 19)	RMER4B|LTR|ERVK	13270.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	1.21	3.77	3.42	2.82	8.59	1.57	0.33	5.33	3.93	3.51	5.53	5.01
Merged-chr2-9881316-1	chr2	9881216	9881416	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024257)	promoter-TSS (NR_024257)	70.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	4.85	3.02	1.71	2.01	3.68	2.51	4.65	5.3	8.65	3.51	1.51	5.33
Merged-chr1-130372249-1	chr1	130372149	130372349	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50575.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	3.63	5.03	2.28	4.02	5.73	2.51	4.65	6.95	1.57	3.51	9.04	3.76
Merged-chr1-34386689-2	chr1	34386581	34386781	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C|LTR|ERVK	46518.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	4.85	6.79	9.13	0.8	1.64	6.27	6.31	5.55	8.65	6.03	8.54	5.01
Merged-chr5-53213641-1	chr5	53213541	53213741	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172710)	promoter-TSS (NM_172710)	-189.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	2.02	6.29	5.7	1.21	2.05	2.2	8.97	5.72	3.15	5.52	6.03	3.76
Merged-chr16-18425845-1	chr16	18425745	18425945	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	-572.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.81	2.26	7.42	2.82	1.64	3.14	3.32	5.3	6.29	3.01	2.51	5.01
Merged-chr2-124709491-2	chr2	124709331	124709531	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55850.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.81	2.26	3.42	4.42	2.05	2.2	8.3	2.5	4.33	6.03	7.03	5.64
Merged-chr9-90112550-2	chr9	90112460	90112660	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 1 of 12)	(CCA)n|Simple_repeat|Simple_repeat	2260.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.86	4.28	4.56	8.04	4.09	5.02	2.66	5.86	12.19	2.51	12.06	1.57
Merged-chr15-58595663-1	chr15	58595563	58595763	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	180195.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.63	3.02	0.57	3.62	2.05	0.31	4.65	3.08	1.97	2.51	2.51	1.57
Merged-chr11-83657574-1	chr11	83657474	83657674	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5010.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.25	1.76	5.7	3.22	11.86	8.47	5.65	4.49	8.65	6.03	5.02	1.57
Merged-chr7-25030272-2	chr7	25030167	25030367	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360067, intron 12 of 19)	LTR50|LTR|ERVL	-24330.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	8.48	5.53	1.14	0.8	2.45	5.64	1.99	5.33	9.64	10.04	1.51	6.89
Merged-chr1-91045013-1	chr1	91044913	91045113	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-8431.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	2.42	2.77	0.57	4.02	2.05	6.27	1.33	6.17	5.7	1.0	1.51	5.64
Merged-chr1-74273828-1	chr1	74273728	74273928	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4772.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	3.23	5.28	1.71	3.22	4.09	2.51	7.97	4.71	2.95	2.01	2.51	2.51
Merged-chr9-50501431-2	chr9	50501338	50501538	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029639, intron 3 of 3)	intron (NM_029639, intron 3 of 3)	3367.0	NR_040714	69631.0	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	1.62	4.53	6.85	8.45	5.73	9.09	7.31	8.47	16.13	4.52	8.54	5.95
Merged-chrX-20923100-1	chrX	20923000	20923200	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2182.0	NM_013680	20964.0	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	5.65	2.77	4.56	1.61	5.32	6.27	0.66	6.28	5.9	6.03	4.52	10.65
Merged-chr14-16598355-1	chr14	16598255	16598455	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289761, intron 2 of 8)	intron (NM_001289761, intron 2 of 8)	-22879.0	NM_001289762	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	8.88	5.79	11.98	10.46	0.82	0.94	1.66	1.46	1.38	0.0	0.5	0.0
Merged-chr15-5009787-1	chr15	5009687	5009887	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243837, intron 12 of 17)	intron (NM_001243837, intron 12 of 17)	53986.0	NM_001243837	109828.0	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	6.46	2.26	2.28	4.83	7.36	1.25	1.0	6.81	0.79	3.51	0.0	1.25
Merged-chr18-44659080-1	chr18	44658980	44659180	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-2585.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	1.62	6.54	2.85	0.8	0.41	0.63	5.31	6.36	0.79	0.0	0.0	0.63
Merged-chr3-121618788-2	chr3	121618690	121618890	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	24695.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	2.42	3.02	5.7	8.45	9.0	5.33	1.66	7.54	8.46	6.03	13.06	8.46
Merged-chr3-141477005-1	chr3	141476905	141477105	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	11441.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.4	1.51	0.57	0.0	6.55	3.45	1.33	1.26	0.98	2.01	3.01	3.76
Merged-chr8-94433624-1	chr8	94433524	94433724	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015514, exon 3 of 3)	non-coding (NR_015514, exon 3 of 3)	1479.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	2.42	2.01	6.28	4.42	1.23	2.82	0.66	5.44	3.34	4.52	1.0	5.64
Merged-chr10-89442186-1	chr10	89442086	89442286	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1781.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	4.04	5.03	2.28	0.8	2.45	5.02	1.0	5.05	0.79	3.01	1.0	1.88
Merged-chr19-46047648-1	chr19	46047548	46047748	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2337.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	5.25	3.27	12.55	4.02	4.91	7.53	4.65	8.02	6.1	8.54	9.04	6.89
Merged-chr10-95256319-3	chr10	95256212	95256412	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	67397.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	8.48	1.51	7.42	8.85	11.86	6.27	2.66	8.58	9.05	9.04	10.05	6.89
Merged-chr9-66349904-1	chr9	66349804	66350004	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-546.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.04	7.04	9.7	0.0	3.68	5.33	1.0	5.3	5.9	2.51	6.03	3.76
Merged-chr17-85494967-1	chr17	85494867	85495067	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123429.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.4	1.01	0.0	0.0	2.05	2.51	7.31	5.8	1.97	3.01	0.0	0.63
Merged-chr4-130798126-1	chr4	130798026	130798226	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5589.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	1.62	2.26	1.14	2.82	2.45	5.02	1.66	6.06	6.49	0.5	5.02	4.07
Merged-chr11-23020443-2	chr11	23020379	23020579	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028672, exon 3 of 4)	exon (NM_028672, exon 3 of 4)	7092.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	4.85	2.52	2.85	0.8	1.64	5.64	9.97	5.27	8.06	9.54	11.56	2.19
Merged-chr5-148535083-1	chr5	148534983	148535183	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	16590.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.4	4.28	2.85	1.61	1.64	5.02	4.98	6.39	5.9	0.5	2.51	1.88
Merged-chr19-12466959-1	chr19	12466859	12467059	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6180.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	10.09	5.03	9.7	7.64	1.64	9.41	1.66	2.97	7.67	4.02	0.5	1.25
Merged-chr12-118849036-2	chr12	118849019	118849219	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2790.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.63	2.01	15.4	4.83	3.27	0.0	0.0	1.82	1.97	0.5	0.5	1.57
Merged-chr5-148594877-2	chr5	148594763	148594963	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42075.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.23	1.51	5.7	4.83	13.09	4.08	3.99	6.93	10.62	7.53	10.05	4.7
Merged-chr7-109463005-2	chr7	109462902	109463102	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170913, intron 10 of 19)	intron (NM_001170913, intron 10 of 19)	-23949.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	8.88	2.52	3.99	13.27	9.82	2.82	5.65	6.06	3.54	3.51	15.07	3.76
Merged-chr4-44166854-1	chr4	44166754	44166954	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038993, intron 1 of 11)	intron (NM_001038993, intron 1 of 11)	684.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	6.06	2.52	3.99	2.82	8.59	13.48	4.32	5.64	6.29	11.55	8.54	8.14
Merged-chr14-21843453-1	chr14	21843353	21843553	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011695, intron 8 of 9)	intron (NM_011695, intron 8 of 9)	-4125.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	2.42	2.77	7.99	6.44	6.55	1.57	4.98	7.88	2.16	8.54	2.01	5.64
Merged-chr6-91718708-1	chr6	91718608	91718808	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	34641.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.83	1.01	1.14	1.61	1.64	8.15	6.31	4.74	1.77	3.51	4.02	5.01
Merged-chr15-81836183-2	chr15	81836082	81836282	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22144.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	11.31	6.79	10.27	8.85	13.91	10.66	15.61	10.4	16.33	7.53	16.08	13.16
Merged-chr7-80749197-1	chr7	80749097	80749297	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 14 of 37)	B2_Mm1a|SINE|B2	54134.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.23	1.26	5.7	0.0	5.73	1.88	3.99	2.86	9.44	3.51	4.02	9.08
Merged-chr5-143066662-2	chr5	143066573	143066773	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	46347.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.85	6.79	3.42	7.24	4.5	6.27	1.33	5.97	8.85	13.05	9.55	1.57
Merged-chr3-60219183-1	chr3	60219083	60219283	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137314.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	2.42	1.51	9.13	4.83	6.55	10.98	10.63	4.77	7.28	8.03	11.56	0.31
Merged-chr12-24534312-3	chr12	24534207	24534407	+	657.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020614, intron 8 of 14)	(TTG)n|Simple_repeat|Simple_repeat	35726.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	8.08	7.04	13.12	15.28	12.27	7.21	5.65	7.12	8.46	15.57	11.56	19.42
Merged-chr19-45311106-3	chr19	45310989	45311189	+	657.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52645.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	10.5	5.53	0.0	10.05	11.05	3.76	6.98	4.74	6.29	3.01	8.54	1.57
Merged-chr16-38789175-3	chr16	38789100	38789300	+	657.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	11003.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	6.46	5.28	9.13	8.45	7.36	6.9	5.31	8.02	4.92	8.03	14.07	2.19
Merged-chr3-104792196-2	chr3	104792083	104792283	+	657.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007484, intron 2 of 4)	intron (NM_007484, intron 2 of 4)	3149.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	4.44	4.28	9.13	4.02	6.14	7.53	2.99	6.56	9.05	4.52	7.03	6.89
Merged-chr2-35984074-3	chr2	35983976	35984176	+	657.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4452.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	10.09	5.53	20.54	8.85	15.14	7.21	2.33	7.91	19.28	11.55	10.05	8.77
Merged-chr10-94312606-3	chr10	94312497	94312697	+	657.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	648.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.46	5.79	10.27	3.22	4.5	11.6	1.0	3.98	7.28	6.03	8.04	4.07
Merged-chr18-38025099-3	chr18	38025019	38025219	+	657.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26150.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	10.09	8.3	3.42	15.28	8.18	7.21	6.64	8.44	3.54	12.05	14.07	10.02
Merged-chr19-55741011-2	chr19	55740918	55741118	+	657.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-792.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.23	3.52	6.85	4.42	11.45	4.39	6.64	3.98	9.64	17.07	12.06	7.52
Merged-chr2-38296108-2	chr2	38296017	38296217	+	657.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-8733.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	9.69	5.53	7.99	6.84	12.68	18.5	7.97	6.42	6.69	7.53	12.56	10.34
Merged-chr2-90539136-1	chr2	90539036	90539236	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L2a|LINE|L2	41511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.04	4.53	2.28	0.4	7.36	9.41	1.99	5.05	1.38	4.02	1.0	2.19
Merged-chr2-35437962-1	chr2	35437862	35438062	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	MIRb|SINE|MIR	23487.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.63	6.79	9.13	0.8	8.59	11.6	6.64	0.64	10.03	1.51	9.04	1.57
Merged-chr15-59643980-3	chr15	59643893	59644093	+	657.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4661.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	11.31	7.04	3.42	4.02	7.77	14.74	6.64	4.18	11.21	10.04	8.54	1.25
Merged-chr8-70762012-1	chr8	70761912	70762112	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_023065)	TTS (NM_023065)	-1091.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	2.02	9.31	3.99	0.4	6.55	5.02	4.32	4.91	3.34	8.03	1.0	7.83
Merged-chr16-57538243-1	chr16	57538143	57538343	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-10999.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.62	1.51	3.42	1.21	5.32	8.78	3.32	5.38	6.69	5.52	5.02	2.82
Merged-chr8-125782615-2	chr8	125782524	125782724	+	657.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	48421.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	2.83	6.29	9.7	5.63	6.55	5.33	7.64	8.8	2.95	9.04	10.05	10.34
Merged-chr11-30781067-2	chr11	30780963	30781163	+	657.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	ID_B1|SINE|B4	9288.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	2.02	3.77	7.99	3.22	5.73	7.84	7.64	8.66	9.05	13.05	17.59	4.39
Merged-chr3-145758773-3	chr3	145758719	145758919	+	657.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026993, exon 1 of 6)	5' UTR (NM_026993, exon 1 of 6)	127.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	3.23	2.26	18.83	8.45	10.23	8.47	18.93	16.26	7.67	2.51	14.07	11.59
Merged-chr5-68048965-3	chr5	68048873	68049073	+	657.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17138.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	6.86	8.3	11.41	8.85	3.68	4.39	5.31	6.39	16.72	9.54	11.56	6.58
Merged-chr11-32341320-3	chr11	32341281	32341481	+	657.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6430.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	7.27	8.05	11.41	10.86	6.55	5.02	6.31	4.71	5.9	3.51	11.05	5.01
Merged-chr7-82868933-2	chr7	82868827	82869027	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	1594.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.83	1.01	5.7	6.03	3.68	2.51	5.65	5.86	4.92	5.02	8.54	2.51
Merged-chrX-133927065-2	chrX	133926960	133927160	+	657.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083895, intron 6 of 10)	intron (NM_001083895, intron 6 of 10)	18635.0	NM_001083895	68792.0	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	11.31	8.8	7.42	2.82	4.91	2.2	5.65	9.08	5.11	6.03	11.05	2.82
Merged-chr4-132786231-1	chr4	132786131	132786331	+	657.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10133.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	2.42	2.77	1.14	0.0	1.64	0.31	2.99	0.79	11.41	4.52	9.04	10.65
Merged-chr7-130816399-1	chr7	130816299	130816499	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081038, intron 11 of 15)	intron (NM_001081038, intron 11 of 15)	42330.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	2.42	2.52	1.71	2.82	3.27	11.29	4.32	4.65	4.13	2.51	5.02	2.82
Merged-chr3-105880460-1	chr3	105880360	105880560	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9602.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.23	5.53	2.28	11.26	7.77	1.25	5.31	5.58	7.47	7.03	14.07	6.89
Merged-chr7-66311423-1	chr7	66311323	66311523	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	70301.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	7.27	3.27	2.85	5.63	5.32	8.47	4.65	6.93	4.33	11.05	4.52	4.7
Merged-chr19-56776245-1	chr19	56776145	56776345	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37438.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	5.25	3.52	2.85	0.8	2.45	5.33	4.65	6.73	2.75	3.51	7.54	2.19
Merged-chr7-80787476-1	chr7	80787376	80787576	+	657.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	15855.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.23	4.78	0.57	4.02	2.45	8.15	0.66	0.9	11.01	7.53	8.04	7.52
Merged-chr4-74222540-2	chr4	74222428	74222628	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19969.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.65	4.28	1.14	6.44	2.05	3.45	4.32	6.0	11.6	6.03	6.03	7.83
Merged-chr15-99500391-2	chr15	99500289	99500489	+	657.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038658, intron 11 of 11)	intron (NM_001038658, intron 11 of 11)	-25659.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	8.88	1.51	9.13	1.21	4.91	6.59	7.31	5.66	5.51	6.53	7.54	5.95
Merged-chr16-26371859-1	chr16	26371759	26371959	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016674)	promoter-TSS (NM_016674)	-20.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	8.48	3.52	7.42	8.85	4.5	6.59	5.31	8.02	5.31	5.52	8.54	2.19
Merged-chr2-138274760-1	chr2	138274660	138274860	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	URR1B|DNA|hAT-Charlie	-3733.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.04	1.76	1.14	2.41	0.41	5.33	5.31	7.37	7.28	3.51	4.02	1.88
Merged-chr2-131178213-2	chr2	131178102	131178302	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	1865.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0.0	7.04	2.85	3.62	6.95	4.7	1.66	4.93	9.44	1.51	5.53	5.33
Merged-chr11-102295589-2	chr11	102295527	102295727	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098836, intron 1 of 12)	intron (NM_001098836, intron 1 of 12)	1002.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	6.86	8.3	2.85	0.8	5.73	7.84	3.32	1.6	9.64	10.04	10.55	7.21
Merged-chr10-8070267-2	chr10	8070178	8070378	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114155.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	2.42	1.01	1.71	3.62	4.5	5.96	3.65	8.64	5.9	8.54	12.06	8.14
Merged-chr2-24927175-2	chr2	24927096	24927296	+	657.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178408, intron 2 of 7)	intron (NM_178408, intron 2 of 7)	-7587.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	10.09	7.8	5.13	4.83	6.14	6.9	7.97	6.06	8.65	7.53	4.02	2.51
Merged-chr12-102499761-1	chr12	102499661	102499861	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29851.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.04	3.02	1.14	0.8	4.09	1.25	5.98	4.51	1.38	2.01	1.51	0.0
Merged-chr2-102451664-1	chr2	102451564	102451764	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010218, exon 1 of 1)	5' UTR (NM_010218, exon 1 of 1)	128.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0.81	3.77	2.28	3.22	6.95	1.25	4.65	4.29	0.98	5.02	4.52	2.19
Merged-chr12-108636735-3	chr12	108636622	108636822	+	657.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	969.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.81	8.55	9.7	8.04	11.86	8.47	4.65	4.57	7.47	13.05	20.1	10.02
Merged-chr8-39655641-3	chr8	39655552	39655752	+	657.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-12974.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	10.9	3.77	11.98	10.86	9.82	5.96	10.63	10.49	8.26	7.53	6.53	10.34
Merged-chr1-107525795-2	chr1	107525696	107525896	+	657.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001174170)	TTS (NM_001174170)	-3207.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	8.88	5.03	4.56	9.25	8.18	5.33	5.65	15.25	5.9	8.54	11.56	3.76
Merged-chr4-6248029-2	chr4	6247989	6248189	+	657.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27542.0	NM_007824	13122.0	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	0.0	1.51	1.14	2.01	0.41	3.76	5.65	1.46	3.93	1.0	3.52	4.39
Merged-chr16-16599941-3	chr16	16599785	16599985	+	657.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301817)	promoter-TSS (NM_001301817)	93.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	7.67	7.04	2.85	10.46	14.32	5.96	11.29	5.72	3.93	7.53	4.52	3.45
Merged-chr4-107313824-1	chr4	107313724	107313924	+	657.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-539.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	1.62	5.28	1.14	4.02	6.95	5.33	8.64	5.33	4.72	4.02	3.52	5.01
Merged-chr8-47867275-1	chr8	47867175	47867375	+	657.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 11 of 22)	intron (NM_133791, intron 11 of 22)	42793.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	4.04	3.27	6.28	7.24	6.55	5.02	4.98	5.8	7.28	7.03	13.06	5.95
Merged-chr19-10101844-3	chr19	10101753	10101953	+	657.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019699)	promoter-TSS (NM_019699)	-350.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	6.86	10.06	6.85	9.65	4.5	5.02	2.99	5.02	8.26	3.01	12.56	5.33
Merged-chr3-144043347-3	chr3	144043256	144043456	+	657.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158976.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	12.11	7.55	4.56	6.84	6.95	14.74	3.99	2.3	15.34	15.57	7.03	2.19
Merged-chr4-32170921-1	chr4	32170821	32171021	+	657.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	206814.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	1.21	4.28	0.57	4.42	7.77	3.45	4.32	3.79	5.7	8.54	10.55	5.64
Merged-chr4-48045959-3	chr4	48045872	48046072	+	657.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	667.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.88	10.56	7.99	2.01	8.59	6.27	3.32	5.02	22.23	8.54	19.6	7.21
Merged-chr10-20568486-2	chr10	20568383	20568583	+	657.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20155.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.88	4.02	12.55	2.41	4.91	6.59	6.98	6.14	5.31	4.02	4.02	2.19
Merged-chr9-95693830-2	chr9	95693732	95693932	+	657.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	56204.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.85	2.77	10.84	3.22	2.86	6.59	5.65	6.39	9.83	4.52	10.55	5.33
Merged-chr2-49420660-2	chr2	49420591	49420791	+	657.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30795.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	6.06	4.28	6.85	10.46	6.95	9.72	6.64	7.65	5.9	6.53	2.01	5.01
Merged-chr2-101905923-2	chr2	101905832	101906032	+	657.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19670.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	3.23	2.26	2.28	1.61	10.64	4.08	0.66	6.11	8.65	5.52	12.56	5.64
Merged-chr7-99090710-3	chr7	99090612	99090812	+	657.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	50432.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.65	7.55	1.71	7.24	10.64	2.2	10.96	5.64	8.46	6.53	9.04	10.02
Merged-chr4-132260545-2	chr4	132260466	132260666	+	657.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	983.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	7.27	4.78	2.28	10.86	8.59	8.15	8.97	5.38	12.39	9.04	6.53	9.08
Merged-chrX-36751769-2	chrX	36751656	36751856	+	657.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 1 of 3)	ORR1B1|LTR|ERVL-MaLR	8124.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	6.46	5.79	4.56	2.82	4.09	8.47	3.99	5.44	6.88	10.54	10.55	10.65
Merged-chr10-78351990-2	chr10	78351878	78352078	+	657.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-278.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	4.85	3.02	2.28	9.65	11.45	8.47	3.65	7.4	11.41	10.54	6.53	9.08
Merged-chr15-34428909-2	chr15	34428773	34428973	+	657.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358780, intron 14 of 18)	intron (NM_001358780, intron 14 of 18)	14352.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	6.06	8.05	9.7	2.01	6.55	3.76	5.65	5.05	3.15	8.03	2.01	1.57
Merged-chr5-107944974-3	chr5	107944887	107945087	+	657.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	L1MD1|LINE|L1	42090.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	17.36	7.04	6.85	10.86	3.68	4.08	3.65	5.21	19.08	10.54	15.07	5.01
Merged-chr19-47408870-3	chr19	47408736	47408936	+	657.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	55575.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	10.5	8.05	8.56	6.03	11.86	5.33	8.64	8.05	8.65	8.03	10.55	5.64
Merged-chr6-38782885-3	chr6	38782798	38782998	+	657.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	54413.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	10.09	8.8	13.12	5.23	2.86	7.21	6.31	7.79	11.8	5.52	9.55	5.33
Merged-chr3-108880670-2	chr3	108880575	108880775	+	657.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	9333.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	8.08	5.28	9.7	2.82	11.45	9.09	4.32	4.6	8.26	16.07	13.06	10.02
Merged-chr15-66568021-2	chr15	66567921	66568121	+	657.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6975.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	8.88	3.52	9.13	4.83	10.64	9.09	6.64	7.15	5.11	1.51	21.1	9.71
Merged-chr17-71337767-3	chr17	71337668	71337868	+	657.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028023, intron 2 of 2)	MTC|LTR|ERVL-MaLR	4036.0	NR_028023	100043644.0	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	8.48	5.28	2.28	9.65	6.14	7.53	7.64	12.93	8.85	14.56	11.05	5.95
Merged-chr2-91975865-2	chr2	91975720	91975920	+	657.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12257.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.06	5.28	7.99	6.84	6.55	5.02	7.97	6.03	7.67	6.53	6.03	10.65
Merged-chr1-131482455-1	chr1	131482355	131482555	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	44906.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	2.83	5.03	4.56	8.04	4.91	8.47	0.33	5.1	9.05	4.52	10.55	3.45
Merged-chr17-67446961-1	chr17	67446861	67447061	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER104|DNA|TcMar-Tc2	-92470.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.62	0.5	4.56	4.02	3.27	0.94	4.98	3.95	4.72	3.51	3.52	0.0
Merged-chr7-102619792-1	chr7	102619692	102619892	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-4805.0	NM_207621	233578.0	Mm.377251	NM_207621	ENSMUSG00000073972	Olfr553	MOR25-2	olfactory receptor 553	protein-coding	4.04	2.26	6.85	7.64	3.27	6.27	3.65	11.92	5.11	7.03	6.53	3.76
Merged-chr9-82973395-1	chr9	82973295	82973495	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081216, intron 4 of 39)	intron (NM_001081216, intron 4 of 39)	2094.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	2.42	0.5	2.85	2.41	0.82	0.94	6.31	4.04	4.33	2.01	2.51	3.45
Merged-chr8-125183673-1	chr8	125183573	125183773	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129478.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.44	3.77	2.28	0.4	3.27	6.27	5.31	4.85	1.57	0.0	2.01	1.57
Merged-chr16-25053678-1	chr16	25053578	25053778	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5961.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.65	10.06	7.99	5.63	2.45	6.27	1.0	3.53	7.28	5.02	7.54	2.82
Merged-chr2-104750768-1	chr2	104750668	104750868	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7967.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	8.08	3.52	1.14	2.41	4.5	6.27	0.66	6.2	8.46	9.54	14.57	5.64
Merged-chr8-69973779-2	chr8	69973696	69973896	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 1 of 12)	CpG	587.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.63	6.79	3.42	7.64	5.73	6.27	7.31	7.15	5.9	5.02	8.04	9.4
Merged-chr10-127658322-1	chr10	127658222	127658422	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009284, intron 17 of 21)	intron (NM_009284, intron 17 of 21)	8381.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	2.42	5.03	3.42	6.84	2.05	1.88	2.99	2.89	7.67	5.02	7.03	7.83
Merged-chr2-32965703-1	chr2	32965603	32965803	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	2402.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	2.83	4.02	5.13	7.24	8.59	6.9	3.99	4.43	5.11	1.51	1.0	7.21
Merged-chr9-114581566-1	chr9	114581466	114581666	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-17197.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	3.23	2.26	4.56	1.61	2.86	3.14	4.32	5.52	2.36	5.02	6.53	4.7
Merged-chr11-84918651-1	chr11	84918551	84918751	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	6.46	2.77	2.85	3.22	11.45	9.72	3.99	4.35	8.06	10.54	8.04	3.45
Merged-chr17-57449713-1	chr17	57449613	57449813	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 16 of 22)	intron (NM_001355722, intron 16 of 22)	91027.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.02	4.78	3.42	6.44	4.09	3.45	2.66	3.98	11.8	11.05	7.03	2.82
Merged-chr16-70412464-1	chr16	70412364	70412564	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 3 of 15)	Lx8|LINE|L1	98515.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.4	4.28	0.0	3.62	2.86	2.51	5.98	4.96	1.57	1.0	1.51	0.94
Merged-chr5-77407767-1	chr5	77407667	77407867	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008048, exon 1 of 5)	exon (NM_008048, exon 1 of 5)	278.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	6.86	0.5	1.71	0.8	8.18	4.39	1.0	5.92	3.54	7.03	3.01	0.94
Merged-chr9-118862294-1	chr9	118862194	118862394	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-64242.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	10.5	3.52	1.14	3.22	0.82	3.14	0.66	0.31	2.16	7.03	2.01	1.25
Merged-chr2-102990051-1	chr2	102989951	102990151	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83462.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.02	0.5	2.28	0.8	8.18	4.08	6.98	4.57	3.74	4.02	1.0	2.19
Merged-chr8-120828436-1	chr8	120828336	120828536	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89797.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.81	3.27	4.56	5.23	9.82	7.53	0.66	3.84	9.05	6.03	7.54	3.45
Merged-chr17-5004593-1	chr17	5004493	5004693	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	9519.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.83	5.03	3.42	0.8	2.45	5.96	3.32	6.81	1.97	5.52	2.51	7.83
Merged-chr2-18773237-1	chr2	18773137	18773337	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12375.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	11.71	6.29	4.56	4.83	6.55	3.76	4.65	5.8	6.29	8.54	3.52	8.46
Merged-chr7-24467079-1	chr7	24466979	24467179	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011113, intron 3 of 6)	PB1D7|SINE|Alu	4596.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	3.63	0.5	0.0	0.0	6.55	5.96	1.99	7.18	1.97	3.51	6.03	0.94
Merged-chr1-86389440-3	chr1	86389329	86389529	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001319227)	promoter-TSS (NM_001319227)	-68.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	9.29	10.82	2.28	4.83	6.14	7.84	0.66	2.69	8.46	7.03	4.52	7.83
Merged-chr2-51099444-2	chr2	51099345	51099545	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49666.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	8.08	6.79	4.56	10.46	1.23	6.59	2.66	6.98	7.08	9.54	12.56	0.63
Merged-chr14-121369345-1	chr14	121369245	121369445	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	9885.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.21	2.26	1.14	6.44	4.5	0.94	4.98	3.5	3.34	4.52	2.51	3.45
Merged-chr2-35447657-1	chr2	35447557	35447757	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13792.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	1.62	10.06	11.41	8.85	3.68	2.82	2.33	5.44	5.51	4.52	0.0	5.01
Merged-chr10-94476290-1	chr10	94476190	94476390	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-38567.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.46	2.26	0.57	8.45	2.05	0.0	1.99	1.4	0.59	1.51	1.51	2.82
Merged-chr4-135150624-3	chr4	135150523	135150723	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	29978.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	8.48	9.81	8.56	4.02	2.86	9.41	6.98	6.87	17.51	3.51	11.56	3.13
Merged-chr2-126468025-1	chr2	126467925	126468125	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	23528.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.23	0.5	0.0	1.61	0.41	7.21	5.98	10.09	5.51	2.51	3.01	1.88
Merged-chr15-75715112-2	chr15	75715031	75715231	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008164)	TTS (NM_008164)	10843.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	9.69	6.79	3.42	7.24	4.5	9.72	9.63	5.38	5.51	8.54	6.53	3.13
Merged-chr10-17406660-1	chr10	17406560	17406760	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-310878.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.63	4.53	1.14	2.01	3.68	3.45	2.66	0.93	2.56	1.51	2.01	1.57
Merged-chr17-5596702-2	chr17	5596610	5596810	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104110.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.44	1.51	5.7	10.46	6.14	12.54	6.31	9.2	8.65	3.51	7.54	4.39
Merged-chr4-102688785-1	chr4	102688685	102688885	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71350.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.81	2.01	6.28	1.61	7.36	4.08	1.66	4.23	2.16	2.51	9.04	3.13
Merged-chr15-74596160-1	chr15	74596060	74596260	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40158.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	7.67	2.77	4.56	0.8	4.91	13.48	12.29	3.34	5.51	2.01	5.53	3.76
Merged-chr4-141016206-1	chr4	141016106	141016306	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008546)	TTS (NM_008546)	5569.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	4.04	2.77	10.84	2.41	15.96	10.66	7.64	14.24	12.19	9.54	9.04	9.08
Merged-chr10-121266426-1	chr10	121266326	121266526	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44970.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.04	2.52	0.0	0.8	5.73	3.76	6.31	6.76	0.39	3.51	1.51	3.13
Merged-chr2-35164288-1	chr2	35164188	35164388	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 31 of 43)	intron (NM_012018, intron 31 of 43)	32054.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	1.21	2.01	3.42	2.41	0.82	5.64	1.33	6.48	3.15	9.54	3.52	0.94
Merged-chr6-134566060-1	chr6	134565960	134566160	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	853.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.04	1.76	6.85	2.82	3.68	5.02	5.65	4.63	3.74	3.01	11.05	4.07
Merged-chr7-142381233-1	chr7	142381133	142381333	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	6637.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.04	3.52	0.0	2.82	4.09	0.31	1.99	0.9	2.36	1.51	3.01	2.19
Merged-chr18-77792254-1	chr18	77792154	77792354	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2296.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	3.63	9.81	2.28	6.44	7.36	10.03	4.65	5.64	7.67	5.52	9.04	9.08
Merged-chr17-34316999-1	chr17	34316899	34317099	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_010382)	TTS (NM_010382)	-8676.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	1.62	6.54	10.27	1.21	0.82	0.0	2.66	0.03	6.88	0.0	2.01	4.07
Merged-chr8-122415756-1	chr8	122415656	122415856	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029993, intron 17 of 18)	B3|SINE|B2	-6264.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	4.44	3.27	3.42	5.63	5.73	3.76	1.0	8.52	5.31	2.01	6.03	5.64
Merged-chrX-159968776-1	chrX	159968676	159968876	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135728, intron 11 of 12)	intron (NM_001135728, intron 11 of 12)	-19657.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	2.42	2.52	4.56	5.63	4.09	1.57	7.64	4.07	7.28	6.03	2.51	2.51
Merged-chr7-80827862-1	chr7	80827762	80827962	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24531.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.65	1.26	3.42	0.8	4.5	4.08	1.99	3.81	8.46	4.52	2.01	2.51
Merged-chr11-78344195-2	chr11	78344064	78344264	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313985, intron 1 of 4)	intron (NM_001313985, intron 1 of 4)	669.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	2.42	6.04	6.28	0.8	11.05	4.39	3.65	3.5	6.69	4.02	3.01	8.14
Merged-chr9-40638607-1	chr9	40638507	40638707	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47357.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.42	2.77	1.14	2.01	1.23	3.45	4.65	2.44	8.65	11.55	7.54	6.27
Merged-chr8-68994569-1	chr8	68994469	68994669	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-94167.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.46	8.55	6.28	11.66	4.09	1.57	4.32	2.61	2.95	2.01	3.01	1.57
Merged-chr2-38602952-2	chr2	38602845	38603045	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	40961.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	6.46	3.77	10.27	13.27	0.41	0.63	4.98	7.37	2.75	0.5	2.01	3.45
Merged-chr10-39170359-1	chr10	39170259	39170459	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6565.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	2.42	3.02	0.57	10.05	4.09	5.96	4.98	4.85	6.29	9.54	5.02	5.01
Merged-chr13-9171312-1	chr13	9171212	9171412	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	77431.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.44	0.5	1.71	7.24	4.91	6.59	2.99	5.78	11.8	2.51	2.01	4.07
Merged-chr10-96628588-1	chr10	96628488	96628688	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11587.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	13.33	7.8	0.0	0.0	5.73	10.35	0.0	0.81	6.1	5.02	2.01	1.25
Merged-chr13-70611217-1	chr13	70611117	70611317	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144837, intron 10 of 18)	intron (NM_144837, intron 10 of 18)	26417.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	2.02	6.79	2.85	4.42	8.18	10.98	4.32	5.44	1.77	5.52	4.02	3.45
Merged-chr3-41348897-2	chr3	41348806	41349006	+	656.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	144293.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.44	5.79	15.4	8.45	7.36	11.6	7.97	7.29	2.36	4.52	3.52	7.21
Merged-chr19-45016939-2	chr19	45016846	45017046	+	656.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145503, intron 1 of 4)	intron (NM_145503, intron 1 of 4)	-1189.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	2.83	6.04	4.56	5.23	7.77	8.15	4.65	4.09	6.49	9.54	2.51	5.01
Merged-chr2-60269539-3	chr2	60269432	60269632	+	656.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025422, intron 2 of 4)	L2|LINE|L2	14952.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	8.48	9.81	4.56	14.48	4.5	8.15	10.63	5.44	8.46	5.02	12.56	5.33
Merged-chr9-14807446-2	chr9	14807331	14807531	+	656.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310728, intron 9 of 18)	MTC|LTR|ERVL-MaLR	22777.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	5.65	5.03	3.99	10.46	6.55	10.98	4.98	11.33	12.19	5.52	16.58	6.27
Merged-chr13-95374146-2	chr13	95374029	95374229	+	656.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025630, intron 1 of 13)	intron (NM_025630, intron 1 of 13)	1228.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	9.29	4.02	2.28	3.22	6.14	5.02	3.32	7.07	9.24	2.51	9.04	7.52
Merged-chr11-116379763-3	chr11	116379663	116379863	+	656.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	33269.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	10.09	5.79	5.13	11.26	7.36	10.66	4.65	6.98	13.18	9.04	11.05	10.96
Merged-chr5-146785570-3	chr5	146785461	146785661	+	656.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	(GGA)n|Simple_repeat|Simple_repeat	9395.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.46	10.31	7.99	11.26	14.73	5.33	5.31	9.36	24.0	8.54	15.07	6.58
Merged-chr1-153847063-3	chr1	153846974	153847174	+	656.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2933.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	13.73	6.29	1.71	5.23	11.86	8.15	5.98	5.83	11.8	11.05	6.03	6.58
Merged-chr6-83634812-1	chr6	83634712	83634912	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21304.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	1.62	1.51	7.99	5.63	13.91	6.27	4.65	7.07	4.13	6.53	5.53	4.39
Merged-chr11-116808377-2	chr11	116808281	116808481	+	656.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347633, intron 4 of 4)	intron (NM_001347633, intron 4 of 4)	19665.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	6.46	7.29	7.42	7.64	10.64	15.37	3.32	6.62	5.11	2.01	2.51	5.01
Merged-chr4-122808317-1	chr4	122808217	122808417	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-27910.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.65	4.02	5.7	6.84	7.77	9.41	3.65	7.04	12.59	4.52	9.04	4.39
Merged-chr6-82772944-2	chr6	82772853	82773053	+	656.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1501.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.63	7.8	9.7	0.0	5.73	8.15	0.33	6.73	11.01	9.04	6.53	3.76
Merged-chr8-85119716-1	chr8	85119616	85119816	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357366)	promoter-TSS (NM_001357366)	-25.0	NM_001357366	244556.0	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	2.83	1.26	5.7	5.23	5.73	10.35	7.31	5.19	5.7	3.51	13.06	5.33
Merged-chr3-59224933-2	chr3	59224842	59225042	+	656.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14060.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	9.69	4.78	6.85	6.44	9.0	3.76	1.0	2.97	19.28	15.06	8.54	10.65
Merged-chr9-72030699-2	chr9	72030590	72030790	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	80511.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	4.85	0.5	0.0	5.23	6.14	2.51	7.97	9.06	7.87	11.55	4.02	7.83
Merged-chr10-19575481-1	chr10	19575381	19575581	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-16468.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	1.62	3.02	10.27	5.63	10.23	6.59	7.97	3.45	4.33	5.52	3.01	4.39
Merged-chr15-37786904-1	chr15	37786804	37787004	+	656.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359844, intron 1 of 7)	L1MB3|LINE|L1	5096.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	3.23	1.01	0.57	6.44	5.32	4.39	4.65	4.12	9.83	2.51	5.53	2.82
Merged-chr6-49213942-3	chr6	49213842	49214042	+	656.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023670, intron 1 of 14)	CpG	1012.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	5.25	9.81	16.54	7.24	11.05	2.82	4.98	4.49	7.08	9.04	8.54	6.89
Merged-chr5-110100396-1	chr5	110100296	110100496	+	656.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001281812)	promoter-TSS (NM_001281812)	-163.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	1.21	2.77	2.85	1.61	3.27	0.94	2.33	5.19	1.18	3.01	4.02	4.07
Merged-chr8-115778635-2	chr8	115778538	115778738	+	656.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71744.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.46	6.29	6.85	8.85	4.09	5.96	5.31	8.92	7.87	11.55	15.58	10.34
Merged-chr16-73098962-2	chr16	73098886	73099086	+	656.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	435837.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	1.62	2.01	0.57	0.0	8.18	10.98	6.98	8.52	8.06	8.54	16.08	7.21
Merged-chr12-59012722-4	chr12	59012673	59012873	+	656.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-618.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	2.83	6.04	3.99	5.23	4.5	5.96	3.65	4.49	8.85	6.53	7.54	7.83
Merged-chr7-72303710-1	chr7	72303610	72303810	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 1 of 22)	Arthur1C|DNA|hAT-Tip100	2885.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	6.06	5.28	3.99	6.03	5.32	6.9	10.63	5.86	1.18	1.0	0.5	0.63
Merged-chr7-19619679-1	chr7	19619579	19619779	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009046, exon 3 of 11)	exon (NM_009046, exon 3 of 11)	9759.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.81	1.51	4.56	0.4	0.82	5.96	5.65	4.35	5.11	4.02	6.53	1.88
Merged-chr16-31025140-1	chr16	31025040	31025240	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56292.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.86	4.02	4.56	6.44	14.73	2.82	11.29	6.93	5.7	5.02	5.53	13.78
Merged-chr2-101815734-1	chr2	101815634	101815834	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-18027.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.81	7.04	7.99	4.42	4.09	9.09	9.3	6.0	7.47	5.52	7.54	6.58
Merged-chr11-53809077-2	chr11	53809002	53809202	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	38629.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.85	5.03	1.71	6.44	3.27	6.27	3.99	4.15	8.46	3.51	5.53	8.77
Merged-chr1-173733322-1	chr1	173733222	173733422	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204910, intron 3 of 7)	RLTR44C|LTR|ERVK	8487.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	4.85	5.79	3.42	1.61	11.05	13.48	2.33	0.95	1.97	4.02	0.5	3.45
Merged-chr15-75910580-1	chr15	75910480	75910680	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178646, exon 1 of 1)	exon (NM_178646, exon 1 of 1)	845.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	1.62	3.27	1.71	2.01	2.05	4.7	3.32	2.92	6.88	5.52	6.53	4.39
Merged-chr7-107665428-1	chr7	107665328	107665528	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-50.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.25	4.02	5.7	9.65	9.82	3.76	9.3	5.58	4.92	5.02	5.02	13.16
Merged-chr6-135026391-1	chr6	135026291	135026491	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14779.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	4.04	2.77	2.28	4.02	7.77	6.9	3.32	6.5	0.79	4.02	2.01	4.39
Merged-chr13-20798693-2	chr13	20798598	20798798	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4585.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.44	4.53	3.99	0.8	4.91	3.45	3.99	5.05	15.74	15.06	10.05	6.27
Merged-chr9-116087305-1	chr9	116087205	116087405	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009371)	TTS (NM_009371)	88058.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.44	5.03	15.97	0.8	7.77	2.82	5.65	2.27	2.16	3.01	2.51	1.25
Merged-chrX-74121135-2	chrX	74121029	74121229	+	656.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6337.0	NM_008106	14539.0	Mm.284825	NM_008106	ENSMUSG00000031394	Opn1mw	Gcp	opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	protein-coding	9.29	2.01	12.55	4.42	4.91	8.15	5.31	7.43	6.88	3.51	11.05	7.21
Merged-chr1-132130873-1	chr1	132130773	132130973	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	8812.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	4.85	3.52	2.28	4.02	5.73	4.39	5.98	4.68	2.95	5.02	8.04	4.07
Merged-chr4-129346751-2	chr4	129346663	129346863	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025970, intron 6 of 6)	intron (NM_025970, intron 6 of 6)	10737.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	3.63	7.29	7.99	4.42	7.36	6.59	6.98	2.27	15.34	10.54	8.04	10.96
Merged-chr18-62046065-1	chr18	62045965	62046165	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	92990.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.25	5.03	3.99	11.26	7.77	6.27	3.99	6.64	7.67	4.52	5.02	6.58
Merged-chr17-49436739-1	chr17	49436639	49436839	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020042, intron 3 of 10)	intron (NM_020042, intron 3 of 10)	8375.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.04	4.02	5.7	10.05	4.09	5.96	4.98	7.23	5.11	1.51	10.55	3.76
Merged-chr15-85042707-3	chr15	85042621	85042821	+	656.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356616)	promoter-TSS (NM_001356616)	-21.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	6.46	5.53	7.42	5.23	14.32	16.93	4.65	5.75	15.14	9.54	17.59	9.08
Merged-chr2-30246718-3	chr2	30246611	30246811	+	656.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8942.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	8.88	7.04	11.98	11.26	9.41	4.08	8.3	11.02	10.62	4.02	8.54	4.7
Merged-chr19-21564270-3	chr19	21564158	21564358	+	656.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88533.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	7.27	12.07	3.42	11.26	7.36	11.6	14.95	7.46	6.88	5.02	6.53	6.27
Merged-chr6-120898329-2	chr6	120898223	120898423	+	656.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	18501.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	6.06	6.54	5.7	6.44	5.73	8.47	4.65	4.54	10.62	10.04	10.05	10.34
Merged-chr7-25711049-3	chr7	25710924	25711124	+	656.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028771)	TTS (NM_028771)	8029.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	4.44	1.76	3.99	4.83	2.05	2.82	3.32	5.92	8.46	6.03	1.51	1.57
Merged-chr6-30499222-1	chr6	30499122	30499322	+	656.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347087, intron 5 of 13)	intron (NM_001347087, intron 5 of 13)	10551.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	1.62	1.26	3.99	4.83	7.36	6.27	6.98	6.06	6.29	4.02	4.02	1.25
Merged-chr12-55474829-1	chr12	55474729	55474929	+	656.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17818.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	1.21	4.02	3.42	1.61	7.77	5.64	4.98	5.89	4.92	6.53	3.52	3.76
Merged-chr8-46210623-1	chr8	46210523	46210723	+	656.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007450, intron 1 of 3)	intron (NM_007450, intron 1 of 3)	439.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	10.9	7.55	4.56	10.05	7.36	4.7	1.99	7.15	7.67	6.03	6.03	1.25
Merged-chr5-134569413-3	chr5	134569315	134569515	+	656.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2661.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	6.46	6.04	13.69	6.44	7.36	8.47	1.66	6.7	12.59	11.55	3.01	8.46
Merged-chr13-22006524-2	chr13	22006428	22006628	+	656.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019429, intron 7 of 11)	intron (NM_019429, intron 7 of 11)	3213.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	5.25	5.79	3.42	11.66	0.82	6.27	7.64	7.09	6.69	6.03	4.02	2.19
Merged-chr7-25720109-3	chr7	25720024	25720224	+	656.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1071.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	10.5	7.29	4.56	5.23	5.32	8.15	5.31	5.16	5.11	8.03	15.58	6.27
Merged-chr8-56301966-2	chr8	56301865	56302065	+	656.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	7413.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	8.08	2.01	6.85	5.23	6.55	5.33	4.98	7.23	9.05	10.54	9.55	2.82
Merged-chr11-69390606-3	chr11	69390486	69390686	+	656.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4760.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	5.25	5.53	3.99	14.48	4.91	8.47	5.31	6.56	11.01	12.55	5.02	16.6
Merged-chr16-20539824-3	chr16	20539734	20539934	+	656.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302970, intron 3 of 10)	intron (NM_001302970, intron 3 of 10)	4354.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	9.69	3.27	13.12	6.44	7.36	8.78	6.31	7.15	5.9	11.55	13.57	4.7
Merged-chr16-93906448-3	chr16	93906356	93906556	+	656.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028083)	TTS (NM_028083)	22555.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	6.46	6.79	1.14	4.83	4.91	6.27	6.31	4.4	6.88	13.56	12.56	8.46
Merged-chr4-115000682-2	chr4	115000582	115000782	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304551, intron 1 of 15)	intron (NM_001304551, intron 1 of 15)	564.0	NM_001304555	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	14.94	7.04	6.85	4.42	7.36	15.68	6.64	7.99	13.77	6.53	10.55	8.14
Merged-chr2-90746158-1	chr2	90746058	90746258	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_018828, intron 1 of 16)	intron (NM_018828, intron 1 of 16)	788.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	4.44	8.3	13.69	9.25	7.36	9.09	9.63	6.81	10.82	9.04	5.02	7.83
Merged-chr9-21425594-1	chr9	21425494	21425694	+	656.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	686.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	1.62	1.26	1.14	0.8	0.0	4.08	1.0	2.33	7.87	7.03	3.52	7.83
Merged-chr3-65387067-1	chr3	65386967	65387167	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026155, intron 3 of 4)	Lx9|LINE|L1	5486.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.4	3.02	5.7	2.41	4.5	6.9	4.65	5.89	2.95	2.01	2.51	5.01
Merged-chr13-64360439-1	chr13	64360339	64360539	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	10081.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	9.29	7.8	0.0	3.62	2.05	15.99	0.66	1.6	7.08	5.52	4.52	0.94
Merged-chr10-44527730-1	chr10	44527630	44527830	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68982.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.23	6.79	0.57	2.82	4.09	7.21	2.99	5.38	12.39	7.03	8.54	9.08
Merged-chr16-95648083-2	chr16	95647976	95648176	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54331.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.04	2.77	3.42	3.62	4.5	5.33	4.32	4.63	9.44	3.01	9.55	5.95
Merged-chr10-93271295-1	chr10	93271195	93271395	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.23	2.52	2.85	2.82	2.86	5.02	0.66	7.26	0.79	1.51	2.01	1.88
Merged-chr12-8771238-1	chr12	8771138	8771338	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011519)	promoter-TSS (NM_011519)	-158.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	5.65	3.02	0.0	4.02	2.45	6.27	6.64	5.3	6.88	4.02	6.53	2.51
Merged-chr9-89264604-1	chr9	89264504	89264704	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	53220.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	1.21	1.51	2.28	4.02	2.86	2.2	11.63	5.8	0.79	2.01	2.01	0.94
Merged-chr8-88653517-2	chr8	88653408	88653608	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	6161.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	5.65	6.79	1.14	10.46	4.5	1.25	3.65	6.7	12.39	9.04	4.02	2.82
Merged-chr14-21662662-2	chr14	21662609	21662809	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 15 of 16)	intron (NM_017479, intron 15 of 16)	51867.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.63	6.79	3.99	4.02	1.64	8.15	3.32	5.05	6.69	3.01	2.51	4.7
Merged-chr2-163749242-1	chr2	163749142	163749342	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	997.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.04	1.01	3.42	1.61	1.23	5.96	6.31	5.24	1.38	1.0	2.51	1.57
Merged-chrX-99199693-1	chrX	99199593	99199793	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63632.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.81	3.52	2.28	10.05	5.32	9.09	10.96	7.54	6.29	6.53	12.56	3.76
Merged-chr11-68897321-1	chr11	68897221	68897421	+	656.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4245.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	1.62	1.76	5.13	0.0	2.86	3.76	1.33	1.99	11.6	4.52	6.03	9.71
Merged-chr13-97254963-2	chr13	97254908	97255108	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13903.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	7.27	9.31	7.42	4.83	5.32	3.76	2.66	3.81	3.74	4.02	6.53	12.84
Merged-chr2-155101849-1	chr2	155101749	155101949	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1770.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	1.62	3.27	1.14	0.4	6.14	2.82	3.32	4.91	1.57	6.03	1.51	3.13
Merged-chr15-102978845-1	chr15	102978745	102978945	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008272, intron 1 of 2)	intron (NM_008272, intron 1 of 2)	1813.0	NM_008272	15427.0	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	1.62	3.52	4.56	2.82	1.64	8.15	1.0	4.68	1.97	3.51	1.51	2.51
Merged-chr7-19299847-1	chr7	19299747	19299947	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8778.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	6.46	7.29	3.99	0.8	3.68	4.39	1.66	0.84	2.16	3.51	2.01	1.88
Merged-chr7-130012267-1	chr7	130012167	130012367	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50102.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.04	2.77	11.98	3.62	3.68	4.39	4.32	3.73	2.56	4.52	1.51	3.76
Merged-chr2-125684075-1	chr2	125683975	125684175	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 2 of 11)	intron (NM_199022, intron 2 of 11)	10975.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	7.27	2.52	4.56	0.0	1.64	5.64	1.99	6.5	2.56	0.5	1.0	4.7
Merged-chr18-46468786-1	chr18	46468686	46468886	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2970.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	8.88	1.51	9.13	3.62	8.18	5.33	4.98	7.65	2.36	0.0	1.0	0.31
Merged-chr3-27667645-1	chr3	27667545	27667745	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	42807.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	1.21	10.82	5.13	5.63	7.36	1.57	6.98	6.64	6.29	5.02	4.02	1.88
Merged-chr3-84693036-1	chr3	84692936	84693136	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	26844.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	10.9	5.53	3.42	5.63	4.91	5.96	3.65	5.52	9.44	4.02	0.0	2.51
Merged-chr1-132157529-2	chr1	132157443	132157643	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17858.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	4.44	3.77	0.57	2.82	1.64	10.66	1.66	6.17	8.26	8.03	10.55	11.59
Merged-chr3-142398360-1	chr3	142398260	142398460	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2664.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.81	3.02	3.42	0.0	0.82	6.9	0.66	0.9	1.18	1.0	2.51	3.13
Merged-chr7-132707921-1	chr7	132707821	132708021	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68995.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.04	2.26	2.28	4.02	6.55	2.82	5.31	8.92	1.38	3.01	3.01	4.07
Merged-chr9-66295132-1	chr9	66295032	66295232	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55318.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	1.21	3.77	13.69	5.63	2.86	5.02	2.99	10.63	2.56	3.51	8.54	4.39
Merged-chr7-30869342-1	chr7	30869242	30869442	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001043317, intron 11 of 15)	intron (NM_001043317, intron 11 of 15)	-7872.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	8.88	11.57	2.28	4.42	1.64	1.57	2.66	1.57	3.15	6.53	3.52	3.45
Merged-chr8-57746882-1	chr8	57746782	57746982	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-93827.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	3.63	2.26	1.71	8.45	0.82	2.51	6.98	6.59	2.95	2.51	4.02	0.31
Merged-chr6-139882231-1	chr6	139882131	139882331	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	40786.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.81	0.5	1.14	0.0	1.64	3.14	4.65	5.64	4.13	7.53	9.04	8.14
Merged-chr4-81744670-1	chr4	81744570	81744770	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-257657.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	4.04	6.04	7.99	4.83	6.55	5.33	5.31	4.51	3.15	4.52	6.03	3.45
Merged-chr7-24237541-1	chr7	24237441	24237641	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	57.0	NM_020262	56869.0	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding	7.67	4.78	5.13	9.25	9.0	5.33	9.63	6.14	5.9	3.51	6.53	5.33
Merged-chr13-12647932-2	chr13	12647819	12648019	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003568, intron 1 of 6)	intron (NR_003568, intron 1 of 6)	2476.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	4.04	4.28	5.13	4.02	9.41	5.64	19.93	7.43	9.44	8.03	7.03	6.27
Merged-chr13-58589643-2	chr13	58589537	58589737	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	21240.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	8.08	6.04	3.42	9.65	7.77	10.35	5.98	7.82	3.93	3.51	7.03	4.39
Merged-chr2-160358553-1	chr2	160358453	160358653	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8512.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	9.29	6.29	1.71	1.61	0.82	15.68	2.66	1.35	4.52	4.52	0.5	0.0
Merged-chr14-64654018-1	chr14	64653918	64654118	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	1487.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.42	1.01	1.14	2.01	9.41	0.94	2.33	6.93	3.93	1.51	4.52	4.07
Merged-chr3-85592883-2	chr3	85592793	85592993	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	18764.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	1.62	3.77	4.56	3.22	3.68	5.96	3.32	6.14	11.41	4.52	10.55	3.45
Merged-chr16-57914788-1	chr16	57914688	57914888	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-160051.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.81	1.51	3.42	1.21	4.91	2.82	5.65	5.19	0.0	3.01	3.52	1.57
Merged-chr2-14230035-1	chr2	14229935	14230135	+	656.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	621.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	8.48	4.28	2.85	2.82	5.73	3.14	2.66	6.08	6.69	4.52	3.01	5.64
Merged-chr5-129063558-1	chr5	129063458	129063658	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33192.0	NM_001081342	243277.0	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	3.63	1.51	3.99	4.02	4.09	6.59	0.33	5.16	1.97	4.02	3.52	2.19
Merged-chr18-53881179-1	chr18	53881079	53881279	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 1 of 12)	Tigger20a|DNA|TcMar-Tigger	19066.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.63	4.53	1.14	1.61	3.27	5.64	1.99	7.79	7.67	8.03	10.05	2.19
Merged-chr12-36051741-1	chr12	36051641	36051841	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9263.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.44	2.01	2.28	3.22	2.45	9.41	1.99	6.17	2.75	1.0	2.01	0.63
Merged-chr11-62560700-1	chr11	62560600	62560800	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	8969.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.25	1.51	3.42	0.4	4.5	1.88	3.32	3.95	3.15	5.52	5.53	8.46
Merged-chr6-16221381-1	chr6	16221281	16221481	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	500720.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.65	3.77	1.14	2.41	6.55	4.39	5.65	3.14	6.69	1.0	1.51	4.7
Merged-chr1-184771200-1	chr1	184771100	184771300	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38707.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.5	3.42	3.62	0.82	5.64	1.0	4.46	0.98	1.51	0.5	1.88
Merged-chr4-8838247-1	chr4	8838147	8838347	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 14 of 36)	(TTTTG)n|Simple_repeat|Simple_repeat	86923.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.23	2.01	3.42	4.02	2.45	5.96	2.66	5.89	6.69	6.03	2.01	6.89
Merged-chr1-71723173-1	chr1	71723073	71723273	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69838.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	6.46	3.02	2.28	1.61	6.14	5.02	7.31	6.7	4.33	2.51	12.56	4.07
Merged-chr4-141790022-1	chr4	141789922	141790122	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172338, intron 1 of 14)	intron (NM_172338, intron 1 of 14)	622.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	8.48	1.26	0.0	6.44	12.27	7.21	4.65	5.19	6.1	6.53	6.53	4.07
Merged-chr2-29820665-1	chr2	29820565	29820765	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6724.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	5.65	5.79	11.41	4.02	5.32	5.64	2.99	5.33	3.93	11.05	4.02	0.63
Merged-chr11-3163476-1	chr11	3163376	3163576	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	B1_Mus1|SINE|Alu	29987.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	8.08	11.07	10.27	16.89	20.05	4.08	20.59	5.33	0.79	1.0	0.5	0.63
Merged-chr10-87020931-2	chr10	87020818	87021018	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12976.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	2.02	4.02	1.71	3.22	1.64	10.98	4.32	5.52	10.82	9.04	15.58	0.63
Merged-chr4-130660127-2	chr4	130660036	130660236	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3185.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	8.88	4.53	12.55	10.46	9.0	6.9	2.66	7.46	10.23	6.03	6.03	2.19
Merged-chr2-174344856-1	chr2	174344756	174344956	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14767.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.25	0.25	2.85	0.4	4.5	2.51	0.0	4.43	3.54	0.5	3.52	3.13
Merged-chr5-65389869-1	chr5	65389769	65389969	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011292, intron 4 of 7)	intron (NM_011292, intron 4 of 7)	1562.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0.81	0.5	1.14	6.84	2.05	4.39	3.65	5.36	2.95	5.02	3.52	4.39
Merged-chr5-32464856-1	chr5	32464756	32464956	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	5886.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	3.63	6.04	7.42	5.63	4.91	13.17	9.3	5.16	5.31	8.54	12.56	2.51
Merged-chr18-11195228-1	chr18	11195128	11195328	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-142661.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	2.42	0.0	0.0	3.22	0.82	2.82	4.65	5.64	0.0	0.0	0.0	1.25
Merged-chr5-122061070-2	chr5	122060970	122061170	+	655.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11219.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	9.69	9.56	10.84	8.45	6.14	7.21	5.65	6.64	6.29	5.52	9.55	3.13
Merged-chr4-45015806-2	chr4	45015723	45015923	+	655.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2786.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	7.67	4.53	5.13	4.83	4.91	4.39	5.31	9.0	19.87	6.53	12.06	8.77
Merged-chr8-14931568-1	chr8	14931468	14931668	+	655.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037736, intron 4 of 27)	intron (NM_001037736, intron 4 of 27)	19905.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	5.65	9.31	2.28	5.63	6.95	8.15	5.98	5.55	6.29	5.52	2.51	4.07
Merged-chr11-20332168-2	chr11	20332037	20332237	+	655.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018861, exon 1 of 8)	exon (NM_018861, exon 1 of 8)	576.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	7.27	4.78	7.99	4.42	5.73	4.08	4.98	5.86	2.56	13.05	6.53	4.7
Merged-chr8-70775803-4	chr8	70775781	70775981	+	655.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029440)	promoter-TSS (NR_029440)	831.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	1.21	3.02	11.41	6.03	9.41	1.88	3.65	3.36	4.13	7.03	5.53	6.27
Merged-chr8-36097104-1	chr8	36097004	36097204	+	655.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172911, intron 1 of 5)	intron (NM_172911, intron 1 of 5)	2276.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	7.27	3.77	9.7	3.62	6.14	4.39	4.32	5.1	3.34	6.03	9.55	2.51
Merged-chr9-116338562-1	chr9	116338462	116338662	+	655.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	149382.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	5.25	4.02	10.27	7.24	11.45	7.21	4.65	5.05	3.34	3.01	4.52	2.51
Merged-chr17-47499156-3	chr17	47499045	47499245	+	655.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356290, intron 2 of 7)	RMER6A|LTR|ERVK	3146.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	1.62	9.31	8.56	3.22	6.55	15.99	9.63	6.73	12.0	10.54	10.05	9.71
Merged-chr19-23057486-1	chr19	23057386	23057586	+	655.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83740.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.63	2.26	0.57	5.63	8.18	9.41	8.64	6.62	10.42	5.02	4.52	5.01
Merged-chr11-95047160-2	chr11	95047062	95047262	+	655.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306071, intron 22 of 24)	intron (NM_001306071, intron 22 of 24)	-5791.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	6.06	5.53	4.56	3.22	6.95	12.54	2.66	5.33	16.13	9.04	13.57	6.58
Merged-chr6-134862988-3	chr6	134862878	134863078	+	655.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	24807.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	18.57	6.54	11.41	6.03	9.41	3.45	5.65	6.22	6.88	7.53	14.57	9.08
Merged-chr6-39381313-2	chr6	39381204	39381404	+	655.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011226)	promoter-TSS (NM_011226)	-49.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	10.09	6.54	11.98	9.25	7.77	10.03	10.96	6.06	5.51	5.02	3.52	5.01
Merged-chr7-15974876-2	chr7	15974784	15974984	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-7349.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	5.65	6.79	6.28	2.01	1.23	16.93	4.32	6.42	8.65	10.54	10.05	3.76
Merged-chr9-119436036-1	chr9	119435936	119436136	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001313757, exon 11 of 11)	3' UTR (NM_001313757, exon 11 of 11)	-8924.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	1.62	3.52	8.56	5.63	6.55	6.9	2.33	5.97	1.57	6.03	3.01	2.82
Merged-chr8-10602595-2	chr8	10602506	10602706	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001319151, intron 33 of 34)	ORR1E|LTR|ERVL-MaLR	279848.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	1.62	6.29	8.56	4.02	9.0	8.78	9.3	6.45	1.77	1.0	3.52	1.25
Merged-chr11-58954055-2	chr11	58953948	58954148	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178218)	promoter-TSS (NM_178218)	464.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	3.23	7.8	8.56	8.04	8.59	5.02	0.66	2.36	12.78	13.56	10.55	10.02
Merged-chr3-104715208-2	chr3	104715101	104715301	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62346.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.81	3.52	0.0	0.4	0.82	5.64	2.33	4.57	9.83	1.51	10.05	9.71
Merged-chr5-99340632-1	chr5	99340532	99340732	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-87705.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.06	6.79	5.7	6.84	4.91	5.33	3.99	6.56	8.06	4.02	9.04	4.7
Merged-chr17-7863942-1	chr17	7863842	7864042	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58968.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	7.67	3.27	4.56	2.82	9.82	6.59	1.33	7.6	9.24	13.05	5.02	6.27
Merged-chr4-58535976-1	chr4	58535876	58536076	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	17317.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	1.21	4.53	9.13	0.8	0.0	1.88	0.0	1.23	12.78	8.03	17.08	5.01
Merged-chr16-28593333-1	chr16	28593233	28593433	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	6710.0	NR_030463	751543.0		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	4.85	3.02	2.28	4.02	4.09	6.59	4.98	7.04	15.14	4.02	9.04	5.33
Merged-chr17-29986762-3	chr17	29986663	29986863	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18276.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	6.86	10.06	6.28	12.47	9.82	4.39	7.97	3.28	11.8	7.03	10.05	8.77
Merged-chr19-12483803-1	chr19	12483703	12483903	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172442, intron 4 of 8)	intron (NM_172442, intron 4 of 8)	18193.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	4.04	5.53	4.56	1.21	10.64	4.39	10.3	4.93	1.97	2.01	2.51	1.88
Merged-chr17-51099885-1	chr17	51099785	51099985	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	59493.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	1.62	3.52	0.57	1.21	9.41	4.39	1.33	3.34	10.23	4.52	12.56	5.95
Merged-chr7-101454775-1	chr7	101454675	101454875	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008548, intron 2 of 30)	intron (NM_001008548, intron 2 of 30)	-1287.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.23	1.01	4.56	0.4	7.36	6.59	0.66	4.71	0.79	1.0	2.51	3.13
Merged-chr16-52062110-2	chr16	52062021	52062221	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	30572.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.44	1.51	2.85	8.04	5.73	6.27	4.98	5.47	14.16	12.55	12.06	4.07
Merged-chr17-29432814-1	chr17	29432714	29432914	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-58231.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.42	6.04	10.84	6.44	4.09	5.64	1.0	4.6	12.19	8.03	6.53	7.83
Merged-chr5-148790600-2	chr5	148790505	148790705	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12642.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	14.54	7.55	5.7	4.02	2.86	7.84	4.65	0.95	8.26	4.02	8.54	2.19
Merged-chr4-46202387-2	chr4	46202318	46202518	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6107.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	6.46	8.55	5.13	5.23	6.14	5.02	2.66	6.93	7.28	6.53	12.06	0.94
Merged-chr14-120280318-3	chr14	120280240	120280440	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	4671.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	12.92	4.28	7.99	4.83	6.95	8.78	1.0	7.23	8.06	6.53	10.05	2.19
Merged-chr11-74497496-2	chr11	74497398	74497598	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	92660.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.63	5.28	17.11	10.46	9.41	10.35	6.64	2.61	5.51	6.03	12.06	5.33
Merged-chr5-121389907-1	chr5	121389807	121390007	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4292.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.42	6.54	16.54	3.22	4.5	0.0	2.66	0.93	12.19	8.03	3.52	8.14
Merged-chr12-32964027-2	chr12	32963951	32964151	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198710, intron 1 of 4)	intron (NM_198710, intron 1 of 4)	9865.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.4	7.04	8.56	6.44	3.27	8.47	4.32	4.07	2.16	0.0	0.5	0.31
Merged-chr10-68396986-1	chr10	68396886	68397086	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75844.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	1.62	3.27	4.56	4.02	4.5	2.2	3.32	5.86	6.1	4.02	12.56	5.33
Merged-chr16-31506897-2	chr16	31506780	31506980	+	655.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77104.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	9.29	7.8	12.55	10.05	9.41	6.59	3.32	5.89	3.74	2.51	3.01	6.27
Merged-chr2-181072320-3	chr2	181072215	181072415	+	655.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33138.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	9.29	8.55	5.13	6.44	8.59	9.41	5.31	6.34	8.65	13.05	10.05	6.89
Merged-chr7-129649128-2	chr7	129649032	129649232	+	655.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57269.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	5.65	7.55	6.85	12.47	6.95	8.15	5.65	7.85	8.85	6.53	8.04	7.52
Merged-chr2-102829338-2	chr2	102829221	102829421	+	655.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039151, intron 5 of 8)	MERVL-int|LTR|ERVL	72344.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	18.57	17.86	29.66	26.55	12.27	6.27	3.99	0.87	9.05	13.05	12.06	9.4
Merged-chr12-108338759-2	chr12	108338667	108338867	+	655.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010010, intron 1 of 14)	intron (NM_010010, intron 1 of 14)	4451.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	19.79	6.54	7.99	5.23	8.18	12.54	1.0	6.25	9.05	7.03	2.51	2.51
Merged-chr4-136016046-1	chr4	136015946	136016146	+	655.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	5603.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	4.04	1.26	7.99	1.61	6.55	4.7	5.98	4.93	3.54	6.03	6.03	7.21
Merged-chr2-159911884-1	chr2	159911784	159911984	+	655.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-35457.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	6.86	9.56	10.27	8.04	1.64	1.25	2.33	5.89	5.7	4.02	4.02	2.82
Merged-chr15-6708890-1	chr15	6708790	6708990	+	655.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	509.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	3.63	10.56	8.56	6.03	7.77	10.35	13.62	4.51	9.24	8.54	6.53	8.77
Merged-chr6-38532548-1	chr6	38532448	38532648	+	655.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-2313.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	4.04	3.77	5.7	2.82	10.64	4.7	4.32	4.4	6.49	6.03	5.02	6.27
Merged-chr13-30788612-2	chr13	30788520	30788720	+	655.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39387.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	12.52	7.55	4.56	8.85	1.64	2.51	4.98	11.44	4.52	2.01	3.52	5.64
Merged-chr2-25396281-2	chr2	25396180	25396380	+	655.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009849, intron 1 of 8)	CpG	406.0	NM_009849	12496.0	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	10.09	14.84	6.28	5.23	4.09	11.29	4.65	4.65	6.49	1.51	6.03	4.07
Merged-chr16-38619241-2	chr16	38619140	38619340	+	655.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 7 of 11)	intron (NM_020260, intron 7 of 11)	56426.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	5.25	4.53	0.0	2.41	4.09	4.08	3.65	6.2	13.37	21.09	11.56	9.71
Merged-chr18-33214819-2	chr18	33214704	33214904	+	655.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-942.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	10.5	7.29	10.27	2.82	10.64	9.09	7.97	8.92	7.67	3.51	4.52	5.01
Merged-chr6-119401736-3	chr6	119401640	119401840	+	655.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	MTD|LTR|ERVL-MaLR	-13006.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	12.52	7.55	6.28	2.41	10.64	11.29	9.3	7.96	12.39	5.52	10.55	4.7
Merged-chr1-36580866-2	chr1	36580775	36580975	+	655.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 11 of 14)	intron (NM_001126046, intron 11 of 14)	12457.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.85	4.53	1.14	3.22	9.0	3.45	6.64	2.58	6.29	11.55	13.57	6.89
Merged-chr9-44318568-2	chr9	44318498	44318698	+	655.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	1684.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	4.04	3.52	2.28	4.42	6.14	5.33	4.98	5.75	11.01	8.54	6.53	4.39
Merged-chr4-133085432-3	chr4	133085309	133085509	+	655.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45224.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.63	7.29	3.42	8.04	7.77	7.84	3.32	6.5	12.98	8.03	4.52	6.89
Merged-chr10-100016614-2	chr10	100016521	100016721	+	655.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	CpG	800.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	8.08	11.82	7.42	10.46	11.05	7.53	7.64	6.34	10.62	2.01	9.55	5.33
Merged-chr2-102659039-1	chr2	102658939	102659139	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001361018, exon 1 of 10)	5' UTR (NM_001361018, exon 1 of 10)	350.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	8.08	2.52	4.56	4.02	6.14	0.94	2.66	3.39	4.33	0.5	2.51	4.07
Merged-chrX-140493834-1	chrX	140493734	140493934	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	37231.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	0.81	1.76	1.71	0.4	3.27	6.27	2.33	4.79	1.77	2.51	8.54	2.51
Merged-chrX-103566606-1	chrX	103566506	103566706	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028381, intron 9 of 10)	L1M3e|LINE|L1	6390.0	NR_030558	100124494.0		NR_030558	ENSMUSG00000065509	Mir421	Mirn421|mmu-mir-421	microRNA 421	ncRNA	3.23	4.53	1.14	2.41	8.18	3.14	6.31	10.35	4.33	1.51	3.01	6.58
Merged-chr17-43578738-1	chr17	43578638	43578838	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10287.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	2.83	1.26	1.14	0.8	3.27	5.33	2.33	4.04	7.87	6.03	4.52	2.51
Merged-chr1-195232797-1	chr1	195232697	195232897	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56082.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	5.65	6.79	6.28	4.02	6.14	4.7	1.66	9.03	6.69	6.03	10.55	1.88
Merged-chr16-55802649-1	chr16	55802549	55802749	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19489.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.4	4.28	1.14	0.4	2.45	2.51	4.98	5.19	3.74	6.03	4.02	3.76
Merged-chr11-86756709-1	chr11	86756609	86756809	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	858.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	16.56	11.07	9.7	6.84	7.36	5.33	6.98	10.54	20.26	21.59	23.62	21.62
Merged-chr11-116427655-1	chr11	116427555	116427755	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6439.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	5.25	3.27	0.0	2.41	5.32	5.33	6.98	4.18	4.52	0.0	4.52	2.82
Merged-chr1-36086795-1	chr1	36086695	36086895	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	18395.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.81	0.75	1.14	0.0	5.32	11.29	8.3	2.33	7.28	5.52	8.04	4.39
Merged-chrX-109098484-1	chrX	109098384	109098584	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	3077.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	2.83	1.01	4.56	0.0	1.23	3.76	4.65	7.63	5.7	4.02	10.55	3.45
Merged-chr6-143221296-1	chr6	143221196	143221396	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24592.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	1.21	2.26	0.0	8.04	4.91	0.63	5.31	2.78	3.34	2.01	5.53	1.57
Merged-chr2-38207971-1	chr2	38207871	38208071	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146122, intron 2 of 21)	B1F|SINE|Alu	79413.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	1.62	1.76	5.7	4.83	0.82	4.7	6.64	5.66	8.06	9.04	8.54	1.25
Merged-chr16-11133675-1	chr16	11133575	11133775	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029582, intron 1 of 11)	L2a|LINE|L2	857.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.4	4.28	6.28	1.61	4.91	4.39	3.32	6.87	3.15	7.03	6.53	5.01
Merged-chr4-3664659-1	chr4	3664559	3664759	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8153.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.04	4.02	5.13	1.61	6.95	8.15	5.65	11.8	0.79	0.5	1.51	2.82
Merged-chr5-140752820-1	chr5	140752720	140752920	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_173405, exon 8 of 8)	3' UTR (NM_173405, exon 8 of 8)	28693.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.06	4.02	1.14	4.02	2.45	12.23	8.97	1.93	2.36	5.52	5.53	2.82
Merged-chr19-32762065-1	chr19	32761965	32762165	+	655.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	4488.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.86	3.77	3.42	1.21	4.09	2.2	1.66	1.68	10.23	4.02	4.52	8.14
Merged-chr13-45915174-1	chr13	45915074	45915274	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	49817.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	1.62	2.26	4.56	3.22	2.45	3.45	7.31	3.98	1.18	1.51	2.01	2.51
Merged-chr7-12943686-1	chr7	12943586	12943786	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	16270.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	4.85	1.76	0.0	1.61	2.86	8.47	2.33	4.04	3.74	5.52	4.52	4.7
Merged-chr7-34378754-1	chr7	34378654	34378854	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	10951.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	2.42	1.76	0.0	1.61	3.68	3.14	3.32	2.78	1.97	6.03	2.51	0.0
Merged-chr16-59627132-1	chr16	59627032	59627232	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019665, intron 2 of 7)	intron (NM_019665, intron 2 of 7)	-9813.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	2.42	1.01	1.71	2.82	1.64	3.76	7.64	6.56	1.38	1.0	4.02	0.0
Merged-chr5-145200588-1	chr5	145200488	145200688	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023322, intron 1 of 2)	B3A|SINE|B2	1294.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	5.65	9.31	2.85	4.42	6.14	5.33	4.65	7.26	5.9	5.02	8.04	5.33
Merged-chr13-48655829-2	chr13	48655718	48655918	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7218.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	5.65	5.03	9.13	0.8	9.0	2.2	1.99	7.71	5.11	6.03	7.03	7.83
Merged-chr13-67109064-1	chr13	67108964	67109164	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	4964.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	21.4	12.32	5.13	10.46	10.23	15.68	9.97	15.22	6.69	11.05	15.07	10.02
Merged-chr17-46754362-1	chr17	46754262	46754462	+	655.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-2148.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	3.63	0.0	0.0	3.22	3.27	2.51	1.0	4.54	6.69	2.01	3.01	5.33
Merged-chr9-32487614-1	chr9	32487514	32487714	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	53838.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	7.27	1.76	2.85	0.4	6.14	10.98	5.65	5.55	6.1	8.03	6.03	4.07
Merged-chr11-98942950-1	chr11	98942850	98943050	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3239.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.04	3.02	2.28	3.22	6.55	1.88	4.98	5.3	2.95	11.55	3.01	4.7
Merged-chr8-14095669-1	chr8	14095569	14095769	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145965)	promoter-TSS (NM_001145965)	-206.0	NM_001145965	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	1.62	1.01	0.0	2.01	0.0	5.33	1.66	7.74	4.72	1.0	6.53	4.07
Merged-chr3-31062699-2	chr3	31062545	31062745	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23679.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	1.21	3.52	1.14	0.8	3.27	3.76	8.3	2.55	5.11	4.52	5.02	8.46
Merged-chr8-126915225-1	chr8	126915125	126915325	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30696.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	1.21	1.76	0.0	0.0	3.27	1.88	6.31	8.5	2.36	0.5	1.51	1.88
Merged-chr16-91884347-2	chr16	91884261	91884461	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47269.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.65	5.28	0.0	0.8	2.05	10.03	8.97	4.91	8.06	5.02	8.54	5.33
Merged-chr1-106351241-1	chr1	106351141	106351341	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 10 of 16)	MTE2a|LTR|ERVL-MaLR	179372.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.04	5.03	4.56	0.8	3.68	10.98	8.3	3.42	8.46	14.56	12.56	4.07
Merged-chr7-43926181-1	chr7	43926081	43926281	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7590.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	10.09	6.54	0.57	0.0	7.77	10.98	3.32	1.91	4.72	2.01	8.04	7.52
Merged-chr14-55768020-1	chr14	55767920	55768120	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008519, exon 2 of 2)	exon (NM_008519, exon 2 of 2)	2058.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	1.21	5.79	1.14	0.8	2.86	5.33	1.33	4.04	2.95	5.02	0.5	0.94
Merged-chr6-67266303-1	chr6	67266203	67266403	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-676.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	2.42	5.28	0.0	2.82	7.36	6.9	2.66	4.29	3.15	4.02	4.52	5.64
Merged-chr1-170286179-1	chr1	170286079	170286279	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153837, exon 3 of 3)	non-coding (NR_153837, exon 3 of 3)	8861.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	3.63	1.76	6.28	1.21	6.95	3.14	3.32	4.68	6.49	0.5	5.53	5.64
Merged-chr17-7176660-1	chr17	7176560	7176760	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	6545.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	5.65	5.28	11.41	4.42	9.82	3.76	1.33	6.7	0.98	3.01	5.53	5.64
Merged-chr1-64875894-1	chr1	64875794	64875994	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	L2a|LINE|L2	80930.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	2.83	5.03	5.13	8.45	8.18	6.9	1.99	6.17	1.77	3.51	6.03	3.13
Merged-chr8-85517111-1	chr8	85517011	85517211	+	655.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24494.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	1.26	0.57	0.0	0.82	0.0	0.66	2.05	9.83	5.52	7.03	10.34
Merged-chr15-12085100-1	chr15	12085000	12085200	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32751.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	7.27	2.52	8.56	6.03	1.64	5.02	1.99	7.57	4.13	1.51	9.04	5.64
Merged-chr4-103358404-1	chr4	103358304	103358504	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-24096.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	4.04	3.02	7.99	7.64	7.36	2.82	1.99	6.7	3.54	0.5	7.54	5.33
Merged-chr16-94332029-1	chr16	94331929	94332129	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	3607.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	3.63	3.77	6.28	2.01	4.5	7.21	6.98	4.63	8.46	9.04	7.03	10.02
Merged-chr3-51427954-2	chr3	51427857	51428057	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	11941.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	4.44	5.03	11.41	9.65	6.55	9.72	6.31	6.9	11.21	10.54	11.05	5.01
Merged-chr5-54038818-2	chr5	54038704	54038904	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	40281.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	2.42	3.52	4.56	5.23	2.45	5.33	4.65	8.47	9.64	10.04	8.54	1.57
Merged-chr4-99386939-1	chr4	99386839	99387039	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	192792.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.81	0.5	0.0	0.8	2.05	1.88	11.29	5.72	5.51	6.03	13.06	3.13
Merged-chr1-174487927-1	chr1	174487827	174488027	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-13898.0	NM_019445	54418.0	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.81	2.01	3.99	6.44	2.86	2.82	8.64	8.47	0.0	0.5	0.0	0.0
Merged-chr2-127003394-1	chr2	127003294	127003494	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5317.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	10.09	1.51	9.13	2.41	1.64	10.03	1.66	4.68	1.57	1.0	3.52	5.95
Merged-chr10-57755418-1	chr10	57755318	57755518	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29505.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.25	8.05	10.84	8.85	6.95	2.82	2.66	10.29	3.15	3.51	8.54	4.07
Merged-chr2-122739309-1	chr2	122739209	122739409	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019788, intron 1 of 4)	intron (NM_019788, intron 1 of 4)	804.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	4.85	3.02	1.71	4.83	8.59	13.48	5.98	4.23	8.46	5.02	3.52	4.07
Merged-chr18-4355981-1	chr18	4355881	4356081	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	ORR1B1|LTR|ERVL-MaLR	2434.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	2.02	3.52	7.42	5.63	7.36	5.96	7.97	3.48	7.28	2.51	7.54	3.76
Merged-chr19-45944507-1	chr19	45944407	45944607	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198296, intron 15 of 25)	Lx8|LINE|L1	-53630.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0.81	1.76	6.28	8.04	9.0	7.84	4.32	5.86	6.88	5.02	3.01	2.19
Merged-chr5-115326543-3	chr5	115326484	115326684	+	654.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-593.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	8.48	12.07	5.13	7.24	10.23	8.78	5.98	5.33	7.28	10.54	9.55	9.71
Merged-chr16-91880095-3	chr16	91880020	91880220	+	654.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	51510.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	10.09	3.02	7.42	8.85	8.59	8.15	7.31	7.71	7.87	8.54	14.57	9.08
Merged-chr2-129408655-2	chr2	129408543	129408743	+	654.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37504.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.04	4.02	12.55	8.45	14.32	11.29	6.98	5.44	8.46	2.01	19.6	5.95
Merged-chr4-129960348-3	chr4	129960193	129960393	+	654.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040647)	promoter-TSS (NR_040647)	-81.0	NR_040647	72225.0	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	4.85	6.54	9.13	2.82	6.14	6.9	7.31	1.46	8.85	6.03	12.56	6.58
Merged-chr7-27493214-3	chr7	27493119	27493319	+	654.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6105.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	4.85	11.07	9.13	12.07	8.18	4.39	6.98	6.62	7.67	9.04	5.53	8.77
Merged-chr16-14361009-3	chr16	14360920	14361120	+	654.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-538.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	10.09	7.04	0.0	4.02	6.55	10.98	1.66	6.06	12.19	15.57	12.56	10.02
Merged-chr13-20220576-3	chr13	20220485	20220685	+	654.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	130078.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.85	2.01	13.12	9.65	4.91	4.39	7.31	6.87	16.92	13.05	17.08	6.89
Merged-chr11-72694145-2	chr11	72694062	72694262	+	654.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009671, intron 1 of 24)	ORR1C2|LTR|ERVL-MaLR	4160.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	4.44	2.26	9.13	5.63	7.77	5.02	4.32	6.7	9.64	6.53	14.07	5.64
Merged-chr17-46384429-2	chr17	46384335	46384535	+	654.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021346, intron 1 of 7)	CpG	669.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	7.67	5.28	1.14	8.85	6.55	5.33	5.65	4.21	6.49	7.03	9.55	9.71
Merged-chr7-19590076-3	chr7	19589962	19590162	+	654.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125836, intron 6 of 17)	intron (NR_125836, intron 6 of 17)	12775.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	16.96	4.78	5.7	6.84	7.36	7.53	3.65	4.82	13.37	7.03	9.04	9.08
Merged-chr4-53027305-2	chr4	53027181	53027381	+	654.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	15401.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.02	2.77	3.42	3.22	5.32	5.96	2.66	4.01	3.15	10.54	1.51	8.46
Merged-chr18-12808912-3	chr18	12808802	12809002	+	654.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 3 of 13)	intron (NM_001252490, intron 3 of 13)	11005.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	8.88	6.04	13.69	13.67	7.36	3.45	1.33	5.55	4.92	2.51	21.61	9.4
Merged-chr8-79679194-3	chr8	79679094	79679294	+	654.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32546.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	6.86	8.8	3.99	6.44	6.95	6.27	7.31	8.89	8.06	12.05	13.57	10.96
Merged-chr3-97297342-2	chr3	97297233	97297433	+	654.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69969.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.85	6.04	6.85	7.24	12.27	7.21	12.95	5.41	3.93	8.54	8.04	9.71
Merged-chrX-71283659-1	chrX	71283559	71283759	+	654.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	L2|LINE|L2	68585.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	3.23	6.04	8.56	13.67	6.95	5.02	4.32	6.31	7.28	4.02	17.59	5.33
Merged-chr14-102806060-1	chr14	102805960	102806160	+	654.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176572.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	3.63	7.29	4.56	1.61	6.95	7.84	1.66	6.17	11.21	11.55	5.02	9.08
Merged-chr13-21786834-1	chr13	21786734	21786934	+	654.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	384.0	NM_178184	319170.0		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	6.06	4.78	3.99	1.61	4.09	2.82	3.65	7.88	9.05	0.5	12.06	8.46
Merged-chr6-116007900-1	chr6	116007800	116008000	+	654.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-12895.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.06	4.78	4.56	7.24	15.14	10.35	6.98	4.37	6.1	14.56	5.53	2.51
Merged-chr6-99300486-3	chr6	99300393	99300593	+	654.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	-33978.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	9.69	5.79	17.11	10.86	2.45	8.78	5.65	12.03	9.64	3.01	13.06	2.82
Merged-chr11-100927559-1	chr11	100927459	100927659	+	654.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	11981.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	6.86	5.53	3.42	2.82	4.91	6.59	4.98	4.26	12.19	5.52	12.56	7.83
Merged-chr19-38429326-2	chr19	38429227	38429427	+	654.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33347.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	11.71	8.55	13.69	15.69	8.18	1.57	10.63	3.42	2.56	1.51	8.54	2.51
Merged-chr2-6096529-2	chr2	6096409	6096609	+	654.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33676.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	5.65	5.79	8.56	0.8	5.32	14.42	8.3	6.73	10.23	5.02	12.56	1.57
Merged-chr9-118041812-3	chr9	118041674	118041874	+	654.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286507, intron 1 of 6)	intron (NM_001286507, intron 1 of 6)	1252.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	5.65	5.79	4.56	5.63	6.95	7.53	5.31	8.75	7.87	3.01	12.56	7.21
Merged-chr9-73103595-2	chr9	73103529	73103729	+	654.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001311106, exon 3 of 4)	exon (NM_001311106, exon 3 of 4)	1231.0	NM_001311106	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	3.63	5.79	10.27	9.25	9.0	7.84	4.32	4.04	2.75	7.53	7.54	3.76
Merged-chr19-45046812-3	chr19	45046735	45046935	+	654.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001178013)	promoter-TSS (NM_001178013)	-741.0	NM_001362380	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	3.23	6.54	7.42	2.41	2.86	4.7	8.3	5.58	5.51	4.52	5.02	5.64
Merged-chr1-36941361-3	chr1	36941249	36941449	+	654.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1822.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	11.71	9.56	11.41	10.86	13.5	10.35	4.98	5.94	11.01	10.04	12.06	3.45
Merged-chr4-134828040-1	chr4	134827940	134828140	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001355501, exon 4 of 9)	exon (NM_001355501, exon 4 of 9)	25305.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	8.48	5.28	2.28	3.62	9.0	5.02	6.31	5.52	4.52	1.0	1.0	2.19
Merged-chr5-24918655-1	chr5	24918555	24918755	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 4 of 15)	CT-rich|Low_complexity|Low_complexity	-10146.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.23	0.25	2.28	2.41	7.77	5.96	3.32	4.82	4.72	8.03	0.0	2.19
Merged-chr1-33904364-2	chr1	33904271	33904471	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	B4|SINE|B4	3250.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.85	4.78	2.28	3.62	7.77	4.7	4.98	3.9	9.83	8.03	7.54	8.46
Merged-chr13-19830735-1	chr13	19830635	19830835	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6478.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0.0	1.26	1.71	6.44	6.95	5.96	0.66	7.54	4.13	2.51	9.04	1.25
Merged-chr17-8857162-2	chr17	8857072	8857272	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	7187.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	2.83	4.28	3.99	2.41	6.55	4.08	3.65	9.7	8.26	4.52	10.05	5.33
Merged-chr1-92933724-3	chr1	92933623	92933823	+	654.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	-685.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	11.71	4.02	2.28	11.66	9.0	5.64	3.65	7.68	5.11	2.51	9.04	7.21
Merged-chrX-109185250-2	chrX	109185125	109185325	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11531.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	2.83	1.76	3.42	0.4	6.95	20.07	4.32	6.53	8.65	9.04	8.04	0.63
Merged-chr5-86174170-1	chr5	86174070	86174270	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	-1427.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	4.85	8.55	5.7	4.83	8.18	5.33	1.0	5.44	6.29	2.51	0.0	2.19
Merged-chr1-97657354-2	chr1	97657255	97657455	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133825, intron 1 of 2)	MTC|LTR|ERVL-MaLR	4321.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.85	2.52	5.7	2.82	6.55	5.33	2.99	7.01	8.46	9.04	8.04	6.89
Merged-chr7-35737030-1	chr7	35736930	35737130	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	17424.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	1.62	3.77	3.42	2.41	5.73	6.27	3.65	6.84	0.0	0.0	0.0	0.0
Merged-chr4-154141340-1	chr4	154141240	154141440	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1032.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	7.27	3.77	3.42	10.46	4.5	8.15	1.33	6.7	5.7	5.02	5.53	4.7
Merged-chr4-141646808-1	chr4	141646708	141646908	+	654.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17307.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.46	2.52	5.13	2.82	0.82	1.88	1.33	3.95	8.85	9.54	9.04	11.9
Merged-chr7-112042871-1	chr7	112042771	112042971	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133758, intron 1 of 27)	L1MDa|LINE|L1	19365.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	4.85	3.52	3.99	4.83	0.41	5.96	4.65	5.94	4.52	3.01	11.05	4.07
Merged-chr3-144605985-2	chr3	144605887	144606087	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	35560.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	2.83	4.02	1.14	2.41	6.55	8.15	7.31	4.54	14.55	3.51	11.05	4.07
Merged-chr2-90547990-1	chr2	90547890	90548090	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	32657.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.42	0.5	4.56	5.63	7.36	10.98	1.66	6.7	4.13	6.03	11.56	4.07
Merged-chr8-61224542-1	chr8	61224442	61224642	+	654.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021506, intron 1 of 11)	CpG	371.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	4.44	6.79	3.99	5.63	4.09	4.7	7.97	6.87	2.75	7.53	6.03	4.07
Merged-chr10-19934741-3	chr10	19934634	19934834	+	654.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008580, exon 1 of 30)	exon (NM_008580, exon 1 of 30)	208.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	8.08	12.83	0.57	3.62	9.41	19.13	7.64	3.53	7.67	10.54	6.03	7.83
Merged-chr1-39835014-3	chr1	39834937	39835137	+	654.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12293.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	1.62	7.29	14.26	4.83	6.95	8.47	8.97	5.64	11.21	2.01	5.53	5.95
Merged-chr2-68349739-2	chr2	68349626	68349826	+	654.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	122255.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	8.48	4.78	5.7	4.42	2.45	7.53	6.31	8.66	12.19	8.54	7.54	9.71
Merged-chr11-59519046-2	chr11	59518938	59519138	+	654.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12398.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	1.01	0.0	0.0	10.23	8.78	3.99	5.8	9.05	6.03	9.55	3.45
Merged-chr11-76493955-2	chr11	76493859	76494059	+	654.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	536.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.86	6.54	13.12	2.01	8.59	17.56	6.98	5.64	8.46	6.53	1.51	1.25
Merged-chrX-20291756-1	chrX	20291656	20291856	+	654.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177353)	promoter-TSS (NM_177353)	8.0	NM_177353	236727.0	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	2.83	0.75	1.71	2.41	3.68	5.02	3.32	6.17	3.15	5.02	6.03	6.27
Merged-chr13-113983898-1	chr13	113983798	113983998	+	654.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	167694.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.0	2.26	1.14	0.8	3.27	3.45	2.99	16.49	10.82	9.04	18.09	3.45
Merged-chr11-46488380-1	chr11	46488280	46488480	+	654.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33449.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.85	3.77	6.85	10.86	4.5	8.78	7.31	5.72	4.33	7.03	9.04	6.58
Merged-chr7-110237758-1	chr7	110237658	110237858	+	654.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	16055.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.06	3.27	4.56	4.02	6.14	5.02	4.98	6.03	4.52	6.53	4.52	5.64
Merged-chr15-59412895-2	chr15	59412795	59412995	+	654.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	38697.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.04	4.28	6.28	4.02	14.73	7.21	7.64	7.21	5.7	7.03	10.55	9.08
Merged-chr7-67242662-2	chr7	67242504	67242704	+	654.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	L1_Mus1|LINE|L1	19988.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	1.62	7.8	10.84	2.41	3.27	13.8	3.32	0.87	6.69	7.53	5.02	9.08
Merged-chr14-121919944-2	chr14	121919844	121920044	+	654.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-4170.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	9.69	9.81	3.42	7.24	10.23	10.35	6.98	6.98	6.1	4.02	8.54	4.39
Merged-chr15-51955792-2	chr15	51955704	51955904	+	654.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35956.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	4.44	5.28	5.7	1.21	6.55	2.82	4.65	6.59	8.06	4.52	9.55	7.52
Merged-chr12-98316063-2	chr12	98315965	98316165	+	654.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47430.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.23	5.03	2.85	6.44	11.05	4.08	5.31	7.37	7.28	5.52	14.07	5.95
Merged-chr11-23974245-3	chr11	23974154	23974354	+	654.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-78984.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	3.23	4.02	11.41	12.07	7.77	8.15	11.96	12.81	9.44	6.53	14.07	6.89
Merged-chr11-6526842-2	chr11	6526730	6526930	+	654.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045893, intron 2 of 3)	B2_Mm2|SINE|B2	1930.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	6.86	13.83	10.27	8.04	2.86	11.6	1.99	2.66	12.0	10.04	11.05	5.33
Merged-chr12-16864660-2	chr12	16864555	16864755	+	654.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30323.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.42	2.77	1.14	1.21	10.23	8.15	6.64	4.46	7.47	4.52	12.06	0.94
Merged-chr1-106138873-2	chr1	106138765	106138965	+	654.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32659.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	5.25	5.03	5.7	0.8	8.18	5.96	7.64	7.82	7.28	5.02	12.56	5.95
Merged-chr4-141860654-2	chr4	141860528	141860728	+	654.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025994, exon 3 of 4)	exon (NM_025994, exon 3 of 4)	-14269.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	2.42	7.04	3.42	4.83	8.18	8.78	7.64	6.64	6.1	10.04	1.51	8.14
Merged-chr7-123368354-3	chr7	123368252	123368452	+	654.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1563.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	10.09	9.56	7.99	8.45	4.5	9.72	5.31	4.49	12.59	8.03	8.04	2.51
Merged-chrX-143058997-3	chrX	143058893	143059093	+	654.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-40601.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	8.88	4.02	10.27	8.04	8.18	6.59	3.32	7.82	12.19	15.06	15.58	4.07
Merged-chr2-93871041-1	chr2	93870941	93871141	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1884.0	NM_001033452	381411.0	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	4.85	4.02	3.42	6.03	6.95	5.02	3.65	6.84	5.11	5.02	1.0	3.76
Merged-chr15-99113864-1	chr15	99113764	99113964	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-12981.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	4.04	7.04	2.28	3.62	4.91	6.9	3.99	3.76	7.67	12.05	3.01	3.13
Merged-chr11-102209927-2	chr11	102209822	102210022	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077696, intron 3 of 26)	intron (NM_001077696, intron 3 of 26)	20223.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	8.48	8.3	5.13	3.62	4.09	5.64	2.66	3.25	7.47	13.05	3.01	2.51
Merged-chr15-73643332-1	chr15	73643232	73643432	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18588.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.65	5.03	1.14	3.22	4.91	8.78	4.32	4.54	5.7	8.03	4.52	3.76
Merged-chr12-85481396-1	chr12	85481296	85481496	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	7506.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	21.4	7.8	11.41	6.03	6.14	5.96	1.66	0.93	5.51	3.01	3.01	5.95
Merged-chr1-66814364-1	chr1	66814264	66814464	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	3231.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	2.02	3.02	3.42	5.63	3.68	1.25	5.31	9.48	4.13	5.52	5.53	2.51
Merged-chr13-119453799-1	chr13	119453699	119453899	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 9 of 10)	intron (NM_145457, intron 9 of 10)	-8960.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.81	2.52	1.14	0.0	6.55	8.78	9.97	6.42	6.29	9.54	7.03	1.57
Merged-chr2-59493695-1	chr2	59493595	59493795	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029723, intron 1 of 3)	intron (NM_029723, intron 1 of 3)	9042.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	5.25	5.53	3.42	4.02	2.86	2.82	12.95	6.81	3.74	9.54	2.51	3.13
Merged-chr5-100643464-1	chr5	100643364	100643564	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30792.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	1.21	0.25	5.7	2.41	3.27	3.14	1.33	2.61	14.95	4.02	9.55	6.58
Merged-chr12-108763713-1	chr12	108763613	108763813	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-29598.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	2.42	4.02	6.28	2.41	4.91	4.08	1.66	5.27	6.29	8.03	4.52	6.89
Merged-chr12-104290045-3	chr12	104289947	104290147	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ETnERV2-int|LTR|ERVK	-24523.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	9.29	5.28	10.27	13.67	6.14	3.76	10.3	8.02	17.9	11.05	8.04	6.89
Merged-chr13-30729471-1	chr13	30729371	30729571	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19762.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	6.86	7.04	2.85	5.23	4.91	11.29	5.31	5.83	3.54	2.01	10.55	8.46
Merged-chr16-37440699-1	chr16	37440599	37440799	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55741.0	NM_172440	207227.0	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	4.44	2.77	2.28	5.63	5.32	4.7	3.99	8.89	6.88	4.52	4.02	4.07
Merged-chr4-32388036-1	chr4	32387936	32388136	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-29399.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	7.67	0.75	6.28	2.41	7.36	6.59	1.0	4.74	5.31	6.53	2.01	1.25
Merged-chr12-20232622-1	chr12	20232522	20232722	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	583157.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.4	1.51	0.57	4.83	0.41	0.31	1.0	1.54	1.18	0.5	2.01	4.39
Merged-chr9-114583983-1	chr9	114583883	114584083	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19614.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	3.23	1.51	2.28	6.03	3.68	0.63	8.64	6.56	3.93	3.51	8.04	3.45
Merged-chr8-14952522-1	chr8	14952422	14952622	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037736, intron 10 of 27)	intron (NM_001037736, intron 10 of 27)	40859.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	10.09	7.04	2.85	6.84	2.05	3.76	3.99	6.84	6.88	8.03	10.05	5.01
Merged-chr1-175660097-1	chr1	175659997	175660197	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133809, exon 15 of 15)	3' UTR (NM_133809, exon 15 of 15)	27904.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.81	0.75	1.14	7.24	2.45	3.14	5.65	6.22	1.77	1.0	4.02	5.01
Merged-chrX-143052795-1	chrX	143052695	143052895	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46799.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	5.25	2.01	6.28	4.02	8.18	3.45	8.3	4.93	6.49	6.03	6.53	3.76
Merged-chr6-54936715-1	chr6	54936615	54936815	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	34946.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.81	2.52	9.13	4.83	0.82	2.82	4.98	5.69	7.47	4.52	9.55	5.01
Merged-chr6-117915634-1	chr6	117915534	117915734	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	-1660.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	3.23	2.01	2.28	3.22	5.73	4.39	2.66	2.36	4.72	3.01	2.51	2.19
Merged-chr9-87098248-1	chr9	87098148	87098348	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46058.0	NM_001177731	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	5.25	7.55	5.7	16.09	4.91	5.64	6.64	6.03	7.08	2.01	10.05	4.07
Merged-chr11-68451566-1	chr11	68451466	68451666	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	19441.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.04	3.02	7.42	4.83	11.45	9.41	2.66	5.47	4.52	4.52	1.51	2.19
Merged-chr11-116985759-2	chr11	116985644	116985844	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	66881.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	3.23	1.51	2.28	6.44	7.77	3.45	5.65	4.96	8.85	0.5	8.54	6.58
Merged-chr15-98937469-3	chr15	98937349	98937549	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3059.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	10.5	9.31	9.13	6.03	10.64	3.45	3.99	4.85	13.57	10.54	13.57	6.58
Merged-chr19-46619068-1	chr19	46618968	46619168	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4333.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.44	1.51	1.14	2.41	18.0	2.2	3.32	3.87	18.1	7.03	11.56	4.07
Merged-chr2-132601207-1	chr2	132601107	132601307	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3011.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	1.21	1.01	2.28	2.41	3.68	1.88	1.99	1.85	2.75	1.51	4.02	5.01
Merged-chr1-166125097-1	chr1	166124997	166125197	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033344, intron 2 of 5)	intron (NM_001033344, intron 2 of 5)	2801.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	1.62	1.26	1.14	0.8	5.73	0.0	6.31	4.74	2.36	1.0	3.01	2.19
Merged-chr17-79663970-1	chr17	79663870	79664070	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	49070.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	5.65	6.04	5.13	2.41	3.27	7.21	4.32	4.93	6.88	5.52	2.01	3.76
Merged-chr10-117930066-1	chr10	117929966	117930166	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	4607.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	1.62	2.01	3.42	4.02	6.95	2.82	2.99	2.47	7.47	5.52	12.06	9.71
Merged-chr10-5197510-1	chr10	5197410	5197610	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347711, intron 90 of 145)	intron (NM_001347711, intron 90 of 145)	-2803.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	1.62	0.0	0.0	0.4	7.36	0.0	3.65	2.21	0.98	1.0	2.01	0.94
Merged-chr15-100312617-1	chr15	100312517	100312717	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	7800.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	2.42	5.28	8.56	9.65	6.14	5.02	0.66	2.5	4.52	7.03	7.03	4.7
Merged-chr8-115269826-1	chr8	115269726	115269926	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	437068.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.23	3.27	3.42	7.24	2.05	2.82	5.65	5.44	5.11	2.01	7.03	2.51
Merged-chr17-67260608-1	chr17	67260508	67260708	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	93851.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	1.51	0.57	2.41	4.09	3.14	2.66	0.45	14.16	2.51	10.55	5.95
Merged-chr5-30172193-2	chr5	30172089	30172289	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145558, intron 6 of 15)	intron (NM_145558, intron 6 of 15)	1450.0	NR_035486	100316709.0		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	12.11	5.53	2.28	12.07	6.14	5.02	5.31	15.34	3.54	2.01	3.01	1.88
Merged-chr7-38064689-1	chr7	38064589	38064789	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	42801.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	5.65	3.52	5.13	5.63	4.91	6.59	4.32	5.02	8.06	3.51	10.55	1.88
Merged-chr1-118759716-1	chr1	118759616	118759816	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131771.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	2.02	4.53	5.7	2.01	4.09	6.27	3.32	4.71	3.15	3.01	5.02	4.07
Merged-chr1-182375336-1	chr1	182375236	182375436	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33730.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	1.01	0.0	0.0	11.45	3.45	5.65	6.2	5.11	3.01	6.03	1.88
Merged-chr7-46839588-1	chr7	46839488	46839688	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6216.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	3.23	1.51	0.57	2.41	7.77	10.66	0.66	6.56	5.11	5.52	1.51	3.76
Merged-chr2-49734111-1	chr2	49734011	49734211	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53575.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	1.21	4.78	0.57	2.41	2.45	10.98	7.31	5.05	6.29	2.51	13.57	3.13
Merged-chr3-31370254-1	chr3	31370154	31370354	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59935.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.42	2.01	5.13	4.83	2.86	2.51	5.65	9.11	3.15	2.01	2.51	2.51
Merged-chr3-101556723-1	chr3	101556623	101556823	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	47984.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	2.01	2.85	2.82	0.0	0.94	0.33	6.76	10.62	0.5	10.55	4.07
Merged-chr17-66854620-1	chr17	66854520	66854720	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 15 of 32)	intron (NM_001357625, intron 15 of 32)	140164.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	2.42	3.52	2.28	0.8	2.05	5.02	1.0	6.93	1.57	2.51	1.51	0.0
Merged-chr15-100131882-1	chr15	100131782	100131982	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-22514.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.86	2.01	2.85	2.82	10.64	11.6	3.32	5.41	10.23	0.0	3.01	3.45
Merged-chr11-82764987-1	chr11	82764887	82765087	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291242)	promoter-TSS (NM_001291242)	642.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	8.88	5.03	2.28	6.03	2.86	5.96	3.32	4.99	8.46	3.01	5.53	7.52
Merged-chr7-81303923-2	chr7	81303824	81304024	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	41310.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	22.21	7.55	8.56	2.82	8.18	7.84	2.66	6.31	11.41	10.54	7.03	4.07
Merged-chr9-46230013-1	chr9	46229913	46230113	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009692, exon 4 of 4)	exon (NM_009692, exon 4 of 4)	1383.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	4.85	3.52	4.56	3.22	8.18	11.29	2.99	4.23	5.9	2.51	5.02	1.25
Merged-chr8-56370812-1	chr8	56370712	56370912	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76260.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.23	4.53	17.68	6.44	4.09	5.33	5.31	12.62	1.97	3.01	11.05	4.7
Merged-chr16-4303833-1	chr16	4303733	4303933	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009624, intron 7 of 10)	intron (NM_009624, intron 7 of 10)	74604.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	9.69	4.02	5.7	11.26	1.64	2.2	3.32	2.44	1.18	2.51	3.01	2.51
Merged-chr11-29823398-3	chr11	29823314	29823514	+	653.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176829, exon 1 of 1)	3' UTR (NM_176829, exon 1 of 1)	2254.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	10.09	5.03	11.98	13.27	6.95	4.39	6.64	10.49	6.29	3.01	11.05	5.95
Merged-chr4-116176589-3	chr4	116176491	116176691	+	653.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3219.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	6.06	4.53	4.56	7.24	7.77	14.42	8.3	5.69	8.26	21.59	12.56	9.71
Merged-chr3-89419166-2	chr3	89419093	89419293	+	653.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	642.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	3.23	3.77	6.28	4.83	6.14	6.9	3.99	7.21	9.44	8.03	7.03	4.7
Merged-chr10-9893691-2	chr10	9893590	9893790	+	653.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	7350.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.04	1.51	1.71	4.83	10.23	12.54	10.3	7.4	11.6	4.52	8.04	2.19
Merged-chr19-6934023-3	chr19	6933927	6934127	+	653.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008431, intron 1 of 6)	CpG	488.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	10.9	4.78	11.98	5.63	4.91	4.39	2.33	6.48	9.44	8.54	8.54	8.14
Merged-chr5-99602938-3	chr5	99602846	99603046	+	653.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	126114.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	9.29	5.28	14.83	9.25	5.32	6.27	9.3	13.91	7.47	14.56	10.55	11.59
Merged-chr2-160374423-2	chr2	160374317	160374517	+	653.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7352.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.48	6.54	9.13	4.42	3.68	6.59	6.64	6.76	5.7	5.52	5.02	7.21
Merged-chr6-148896989-1	chr6	148896889	148897089	+	653.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-752.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	6.46	7.04	2.28	6.44	4.91	5.96	6.31	5.07	6.29	10.04	7.54	2.51
Merged-chr19-6046110-2	chr19	6046025	6046225	+	653.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-451.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	10.09	9.06	8.56	2.82	5.32	6.59	3.99	2.66	9.44	8.54	7.03	10.02
Merged-chr1-75400061-2	chr1	75399956	75400156	+	653.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173477)	promoter-TSS (NM_001173477)	-29.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	5.65	2.01	1.14	3.22	2.86	5.64	6.31	6.59	7.87	6.03	8.04	5.95
Merged-chr15-81155413-1	chr15	81155313	81155513	+	653.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	35344.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.65	2.77	3.42	0.4	6.55	6.9	5.31	4.63	8.46	6.03	6.53	4.7
Merged-chr17-84094531-1	chr17	84094431	84094631	+	653.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15871.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	5.65	2.01	0.0	6.03	8.59	3.45	4.32	6.22	5.51	8.03	6.03	3.45
Merged-chr11-75584885-1	chr11	75584785	75584985	+	653.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3194.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.65	6.54	3.42	2.01	6.55	2.51	2.33	2.89	12.78	11.05	11.05	14.41
Merged-chr2-162977459-1	chr2	162977359	162977559	+	653.666687	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001081338)	TTS (NM_001081338)	-10022.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	4.04	8.05	10.84	12.87	2.45	3.76	0.0	2.13	6.49	4.52	12.06	4.07
Merged-chr3-127300062-1	chr3	127299962	127300162	+	653.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	108996.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.42	3.77	5.13	2.41	5.73	8.47	7.31	4.29	11.21	9.54	5.53	8.14
Merged-chr4-128635763-1	chr4	128635663	128635863	+	653.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17144.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	10.5	9.56	3.99	6.84	10.23	6.27	4.65	3.59	10.42	7.53	4.02	3.76
Merged-chr9-7570581-1	chr9	7570481	7570681	+	653.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-815.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	1.62	0.0	0.0	0.8	5.73	2.51	2.66	4.01	4.33	6.53	6.03	1.57
Merged-chr4-155144473-2	chr4	155144350	155144550	+	653.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081100, intron 13 of 13)	intron (NM_001081100, intron 13 of 13)	57846.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	17.77	16.85	10.27	14.08	14.32	7.84	4.65	5.1	8.26	12.05	6.53	1.88
Merged-chr12-84772167-2	chr12	84771973	84772173	+	653.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	1039.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	4.78	1.14	2.01	2.05	4.7	1.99	2.38	7.47	3.01	2.51	3.45
Merged-chr3-27281210-2	chr3	27281120	27281320	+	653.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35857.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	2.83	3.52	0.0	2.41	7.36	9.09	2.66	6.84	5.31	5.52	6.53	6.58
Merged-chr7-38028849-3	chr7	38028772	38028972	+	653.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9320.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	9.69	7.29	13.12	7.64	10.23	6.59	8.97	7.79	8.46	11.55	8.54	4.39
Merged-chr2-144300268-2	chr2	144300149	144300349	+	653.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29345.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.44	3.52	6.85	2.82	11.05	5.64	5.65	7.96	8.65	4.52	10.05	7.52
Merged-chr9-111095921-1	chr9	111095821	111096021	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-22190.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	7.27	2.26	2.85	1.61	11.05	8.78	8.3	5.89	3.54	3.51	6.03	2.51
Merged-chr10-44495598-2	chr10	44495496	44495696	+	653.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36848.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.85	4.28	10.27	10.86	5.32	7.84	5.98	11.16	9.44	6.53	6.03	6.58
Merged-chr1-166153560-2	chr1	166153444	166153644	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021610, intron 3 of 6)	intron (NM_021610, intron 3 of 6)	23323.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.85	4.28	5.7	3.62	6.55	2.2	5.65	7.71	8.06	8.03	14.07	8.77
Merged-chr6-83006261-1	chr6	83006161	83006361	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27210.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	1.62	1.26	5.13	2.41	6.14	2.51	4.65	7.01	1.18	3.51	1.0	0.94
Merged-chr11-88994437-1	chr11	88994337	88994537	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4966.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.63	1.01	0.57	4.83	7.36	6.9	2.33	7.29	5.11	0.0	0.5	6.58
Merged-chr3-40739185-1	chr3	40739085	40739285	+	653.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6428.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	7.27	4.02	2.28	8.85	2.86	1.88	4.98	9.9	9.44	4.52	14.57	5.95
Merged-chr4-142010698-1	chr4	142010598	142010798	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	953.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	1.62	3.27	7.42	3.62	6.95	0.0	4.98	6.17	3.54	1.51	2.51	2.82
Merged-chr17-24645274-2	chr17	24645218	24645418	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023449)	promoter-TSS (NM_023449)	-361.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	4.85	4.78	1.71	1.61	6.55	13.17	1.33	6.08	10.62	6.03	7.54	5.95
Merged-chr9-15033785-2	chr9	15033673	15033873	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	11705.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	2.42	4.53	6.28	5.23	2.86	2.51	5.65	7.15	11.6	10.54	8.04	6.89
Merged-chr5-21220737-1	chr5	21220637	21220837	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34470.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	8.08	5.03	10.27	1.61	6.14	8.78	1.66	4.57	13.37	3.01	4.52	3.45
Merged-chr4-150316721-1	chr4	150316621	150316821	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	34805.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.46	1.01	3.99	3.62	8.18	7.53	3.99	5.94	4.72	5.02	13.06	2.82
Merged-chr12-55302063-1	chr12	55301963	55302163	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	-574.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	7.67	6.79	4.56	5.23	3.68	5.64	5.31	9.59	7.87	7.53	7.54	4.7
Merged-chr5-21586963-1	chr5	21586863	21587063	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199632, intron 7 of 20)	B3A|SINE|B2	43436.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	8.08	2.52	2.28	2.41	3.27	4.08	4.98	5.72	7.28	6.03	3.52	7.21
Merged-chr16-24575910-1	chr16	24575810	24576010	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	46596.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	6.46	3.52	10.27	4.42	12.68	8.78	4.65	6.08	6.49	5.52	8.54	8.77
Merged-chr15-73604754-1	chr15	73604654	73604854	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-8228.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.04	1.26	0.0	3.22	1.64	7.53	5.98	7.96	1.97	15.57	2.51	3.45
Merged-chr7-30553192-1	chr7	30553092	30553292	+	653.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-110.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	8.48	6.54	0.0	6.03	4.5	3.14	4.65	4.01	10.62	15.06	9.55	6.58
Merged-chr1-37720024-1	chr1	37719924	37720124	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028096)	promoter-TSS (NM_028096)	-213.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	3.23	5.53	2.28	2.01	8.59	4.7	11.63	4.26	3.54	4.02	3.01	4.07
Merged-chr8-70522234-3	chr8	70522130	70522330	+	653.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029366, intron 1 of 4)	B2_Mm2|SINE|B2	950.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	12.52	6.04	3.42	9.65	12.27	11.92	4.32	9.08	6.88	18.58	2.51	7.83
Merged-chr16-11054612-2	chr16	11054496	11054696	+	653.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11702.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	9.69	6.79	8.56	8.45	6.55	5.02	4.32	6.67	10.82	2.01	9.04	5.95
Merged-chr6-28621169-2	chr6	28621077	28621277	+	653.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	140829.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	2.83	2.77	8.56	2.41	11.86	5.64	4.32	6.5	9.24	5.52	5.53	7.52
Merged-chr16-4587841-1	chr16	4587741	4587941	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	4.85	3.52	2.85	1.21	6.14	11.29	8.3	5.13	3.15	6.03	2.51	5.33
Merged-chr8-122523450-1	chr8	122523350	122523550	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	27879.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	4.44	1.26	2.28	5.63	4.5	7.21	8.97	5.92	4.92	1.51	6.03	4.7
Merged-chr2-148580697-1	chr2	148580597	148580797	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91918.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.06	3.77	2.85	1.61	4.5	6.27	5.98	5.38	3.54	3.01	5.53	3.13
Merged-chr9-32962934-1	chr9	32962834	32963034	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER126|DNA|DNA	-33968.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	6.46	3.27	2.28	5.23	6.55	5.64	5.98	7.29	0.39	1.51	3.01	0.31
Merged-chr10-91168423-1	chr10	91168323	91168523	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080129, intron 1 of 8)	B1_Mus1|SINE|Alu	2127.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.04	5.03	9.13	2.01	8.59	5.02	6.31	6.36	2.56	3.01	4.52	0.94
Merged-chr8-46497111-1	chr8	46497011	46497211	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6145.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	2.02	2.26	5.7	5.23	8.59	7.21	3.65	5.61	7.28	3.51	6.03	2.51
Merged-chr10-111925677-3	chr10	111925573	111925773	+	653.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47022.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	5.25	8.05	15.4	14.48	9.0	5.02	4.65	9.7	10.03	9.04	9.04	14.41
Merged-chr13-62880438-1	chr13	62880338	62880538	+	653.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019395, intron 1 of 6)	intron (NM_019395, intron 1 of 6)	7844.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.0	2.77	0.57	0.0	0.82	2.2	4.32	3.7	6.69	16.07	14.57	7.83
Merged-chr11-100295524-2	chr11	100295438	100295638	+	653.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24411.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	2.42	7.55	2.28	3.62	2.86	17.56	4.98	6.76	5.51	20.08	4.02	9.71
Merged-chr10-20719370-2	chr10	20719271	20719471	+	653.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	5707.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.63	4.28	2.28	7.64	11.05	7.21	2.99	5.92	9.24	10.04	10.05	5.01
Merged-chr4-63400117-2	chr4	63400039	63400239	+	653.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1899.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.63	6.04	9.13	0.0	7.77	6.27	10.3	7.18	11.8	14.56	2.01	5.95
Merged-chr7-97424993-2	chr7	97424893	97425093	+	653.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7443.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	2.02	3.27	3.99	2.01	6.14	3.14	2.33	4.54	7.47	14.06	19.6	10.02
Merged-chr7-18892447-2	chr7	18892347	18892547	+	653.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033314, exon 10 of 14)	exon (NM_001033314, exon 10 of 14)	7757.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	14.94	7.04	7.42	7.24	4.91	6.59	6.31	8.64	9.64	3.01	7.03	3.76
Merged-chr17-67449573-2	chr17	67449461	67449661	+	653.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-95070.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.83	4.53	4.56	8.04	9.41	9.09	3.65	3.67	13.18	9.04	6.03	7.52
Merged-chr7-87926593-5	chr7	87926521	87926721	+	653.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	342453.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	4.44	3.02	2.28	4.83	9.82	7.21	7.64	10.82	9.64	1.51	6.03	2.82
Merged-chr2-156840001-3	chr2	156839889	156840089	+	653.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173396)	promoter-TSS (NM_173396)	-18.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	8.88	8.3	3.42	8.04	11.05	9.72	8.97	7.01	10.42	9.04	3.01	10.65
Merged-chr8-25038556-2	chr8	25038425	25038625	+	653.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_031257)	TTS (NM_031257)	437.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	8.08	13.08	8.56	8.04	6.55	11.92	8.64	7.63	4.33	11.05	2.51	8.77
Merged-chr5-21363487-2	chr5	21363395	21363595	+	653.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	L1MA5|LINE|L1	-9178.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	4.78	11.41	5.23	7.77	6.27	5.98	6.5	12.39	1.51	14.57	8.77
Merged-chr15-39320979-1	chr15	39320879	39321079	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053271, intron 4 of 26)	intron (NM_053271, intron 4 of 26)	122693.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	1.62	0.5	1.14	3.22	6.55	6.9	2.66	7.49	3.34	2.51	4.02	4.07
Merged-chr13-56592122-1	chr13	56592022	56592222	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-17464.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.63	3.52	2.28	3.22	10.23	4.08	1.0	4.65	11.21	5.52	10.05	10.34
Merged-chr9-37406699-1	chr9	37406599	37406799	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001309390, intron 10 of 17)	intron (NM_001309390, intron 10 of 17)	4802.0	NM_001309390	74144.0	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	3.23	3.02	4.56	6.03	4.09	5.33	2.99	4.93	3.74	1.51	2.01	4.07
Merged-chr11-88205064-2	chr11	88204905	88205105	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291271, intron 1 of 4)	intron (NM_001291271, intron 1 of 4)	617.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	6.06	2.26	11.41	7.24	3.27	5.02	9.63	5.27	3.54	4.02	11.05	7.83
Merged-chr1-184631501-1	chr1	184631401	184631601	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73810.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	1.23	0.94	0.0	0.7	0.2	0.0	0.5	0.94
Merged-chr2-163055188-1	chr2	163055088	163055288	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008652, intron 1 of 13)	CpG	553.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	2.83	4.78	1.14	6.44	1.64	0.63	2.33	1.88	3.54	3.51	1.0	2.51
Merged-chr9-55307281-1	chr9	55307181	55307381	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19632.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	2.42	1.01	4.56	2.01	6.95	3.14	4.65	4.77	3.15	2.01	3.52	0.94
Merged-chr7-90135639-1	chr7	90135539	90135739	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5426.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.04	4.02	3.99	6.44	7.36	5.96	1.99	6.95	0.98	4.02	3.52	10.02
Merged-chr17-34947864-1	chr17	34947764	34947964	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	3144.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	9.29	3.27	11.41	7.24	3.68	5.64	4.65	2.05	10.42	2.51	8.04	5.95
Merged-chr4-135883457-1	chr4	135883357	135883557	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9611.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.4	3.02	0.0	1.61	6.95	4.39	7.31	5.55	9.83	5.02	8.04	8.46
Merged-chr11-50255040-1	chr11	50254940	50255140	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175334)	TTS (NM_175334)	-16508.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.04	1.26	2.28	2.41	2.45	5.02	4.98	5.52	1.97	6.03	10.05	3.45
Merged-chr7-97080491-1	chr7	97080391	97080591	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1260.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.46	1.51	9.13	5.63	7.36	9.41	3.32	6.42	5.9	2.01	3.01	3.13
Merged-chr6-31215777-1	chr6	31215677	31215877	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	2697.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.85	11.82	1.14	4.42	5.73	8.15	3.99	5.64	6.69	5.02	4.02	2.19
Merged-chr4-3683876-1	chr4	3683776	3683976	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	PB1|SINE|Alu	5755.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	1.62	2.52	6.85	3.22	0.82	6.9	3.32	5.02	6.29	11.05	1.0	3.45
Merged-chr10-70225974-1	chr10	70225874	70226074	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19302.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.4	1.01	0.57	2.41	0.82	4.7	6.64	5.13	5.7	1.51	1.51	1.88
Merged-chr2-77327932-1	chr2	77327832	77328032	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47340.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.81	2.26	3.42	0.8	4.91	6.27	7.64	5.64	4.72	4.52	9.04	5.01
Merged-chr19-46478419-1	chr19	46478319	46478519	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-23229.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.63	0.75	5.7	1.21	7.77	7.21	1.99	4.54	2.16	3.01	4.02	2.82
Merged-chr6-126851514-1	chr6	126851414	126851614	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1584.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	6.86	10.06	18.83	7.24	11.45	10.03	4.98	3.56	3.54	4.02	5.02	2.51
Merged-chr11-89091048-1	chr11	89090948	89091148	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 3 of 3)	CT-rich|Low_complexity|Low_complexity	17207.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.0	0.75	0.0	0.0	0.41	0.63	0.0	0.31	9.44	5.02	5.53	7.21
Merged-chr13-60746376-1	chr13	60746276	60746476	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	39988.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.86	4.02	2.28	4.02	4.91	5.02	4.98	3.73	4.92	4.02	3.52	4.7
Merged-chr18-75047426-1	chr18	75047326	75047526	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 2 of 16)	intron (NM_027727, intron 2 of 16)	28654.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.81	3.02	1.14	0.8	11.05	4.7	2.66	4.96	0.39	0.0	0.5	2.82
Merged-chr8-46143596-2	chr8	46143499	46143699	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19453.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	9.69	5.53	5.13	3.22	3.27	8.78	5.98	4.77	14.75	5.52	10.55	4.7
Merged-chr9-77732275-1	chr9	77732175	77732375	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22260.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.65	4.02	13.12	4.83	3.68	5.02	5.65	16.07	10.42	8.54	13.57	2.19
Merged-chr13-99184900-1	chr13	99184800	99185000	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	77.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	2.83	2.01	1.14	0.4	2.05	3.45	7.31	3.76	1.38	5.52	2.51	1.88
Merged-chr14-60290193-2	chr14	60290097	60290297	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	24992.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	1.21	4.53	1.71	7.24	3.27	7.21	6.64	7.63	7.87	10.54	2.51	5.64
Merged-chr2-148488125-1	chr2	148488025	148488225	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44590.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	4.85	3.27	7.42	6.03	2.86	3.14	3.65	4.68	10.42	6.03	4.02	4.07
Merged-chr9-25484664-1	chr9	25484564	25484764	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	3067.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.02	4.78	5.7	0.4	2.05	6.9	1.0	3.34	1.57	4.02	4.02	2.19
Merged-chrX-152180102-1	chrX	152180002	152180202	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005475, intron 1 of 13)	intron (NM_001005475, intron 1 of 13)	1093.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	1.21	3.77	1.71	4.42	5.73	4.08	6.98	5.8	3.74	3.51	3.01	1.88
Merged-chr11-76846334-1	chr11	76846234	76846434	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007754, exon 1 of 21)	exon (NM_007754, exon 1 of 21)	674.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	2.83	4.53	2.85	0.0	6.14	4.08	7.31	1.35	4.72	6.03	2.51	3.45
Merged-chr1-167231279-1	chr1	167231179	167231379	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030724, intron 4 of 6)	MIRc|SINE|MIR	53848.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	4.44	3.77	3.99	2.41	1.23	5.02	7.31	5.92	1.18	0.0	1.51	0.94
Merged-chr8-120685342-1	chr8	120685242	120685442	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17022.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	5.65	1.01	1.14	1.61	1.64	3.45	5.98	8.69	3.54	7.03	3.01	1.25
Merged-chr17-7175402-1	chr17	7175302	7175502	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	5287.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	2.83	0.75	1.14	0.4	2.45	2.51	3.99	5.1	0.59	2.51	4.02	3.76
Merged-chr10-40316651-1	chr10	40316551	40316751	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14463.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	5.65	2.52	0.0	5.63	5.73	9.09	5.65	4.18	7.67	8.54	1.0	7.21
Merged-chr1-135815520-2	chr1	135815412	135815612	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3086.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	8.88	10.31	2.28	2.41	1.64	4.39	6.31	0.34	7.47	10.54	10.55	1.25
Merged-chr6-128829922-1	chr6	128829822	128830022	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3607.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.04	4.78	2.28	0.0	1.64	5.96	2.66	5.38	8.46	1.0	7.54	3.45
Merged-chr7-143073225-2	chr7	143073117	143073317	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020277, exon 23 of 25)	exon (NM_020277, exon 23 of 25)	3849.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	6.86	5.03	5.13	5.63	9.82	11.6	6.31	5.27	9.44	12.05	10.55	5.33
Merged-chr7-81234369-1	chr7	81234269	81234469	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	20565.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.42	3.02	0.0	0.0	3.27	1.57	5.98	8.72	1.38	2.51	14.07	1.25
Merged-chr18-23866109-1	chr18	23866009	23866209	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62139.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.81	2.52	2.28	2.01	2.86	0.0	4.98	5.24	5.31	0.0	3.52	3.45
Merged-chr6-108212216-1	chr6	108212116	108212316	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-880.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	1.62	2.26	5.13	1.21	2.86	6.59	2.33	4.6	5.11	4.52	2.51	6.27
Merged-chr11-78044837-1	chr11	78044737	78044937	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284228, intron 1 of 11)	intron (NM_001284228, intron 1 of 11)	4530.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	6.86	4.53	11.41	2.41	4.09	5.96	4.98	1.01	9.83	4.52	12.56	6.58
Merged-chr9-14885320-1	chr9	14885220	14885420	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_176807)	TTS (NM_176807)	18631.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	2.83	2.77	1.14	3.22	8.18	4.08	0.33	7.12	2.36	2.51	5.02	6.27
Merged-chr12-3712760-1	chr12	3712660	3712860	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-94220.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.25	1.51	6.85	3.22	4.09	1.88	2.99	7.15	6.1	2.51	1.51	5.64
Merged-chr3-19369203-1	chr3	19369103	19369303	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-57881.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	2.02	7.55	4.56	3.22	9.41	4.39	1.99	7.43	0.0	2.01	0.0	1.57
Merged-chr9-45313593-1	chr9	45313493	45313693	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5507.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.81	0.5	1.14	0.8	2.45	1.88	2.66	2.97	9.44	4.02	6.53	6.58
Merged-chr3-57550647-1	chr3	57550547	57550747	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133784, intron 2 of 6)	intron (NM_133784, intron 2 of 6)	25229.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	2.02	3.52	0.0	3.22	5.32	8.78	4.98	3.93	1.77	2.01	0.0	1.88
Merged-chr5-134558296-1	chr5	134558196	134558396	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013751, exon 1 of 1)	exon (NM_001013751, exon 1 of 1)	1875.0	NM_001013751	214292.0	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	4.44	2.77	3.42	3.22	8.59	4.7	5.31	6.2	4.13	2.51	5.02	4.07
Merged-chr12-79628245-3	chr12	79628245	79628445	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	296388.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.44	1.01	3.42	1.61	0.82	4.7	0.33	2.24	4.33	2.51	1.51	3.45
Merged-chr8-11462085-1	chr8	11461985	11462185	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15844.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.06	3.27	6.28	3.22	2.86	9.41	7.31	5.33	5.7	8.54	3.52	5.01
Merged-chr3-149084347-1	chr3	149084247	149084447	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129712.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.04	2.26	3.42	2.01	4.09	6.9	4.98	4.74	4.52	0.0	0.5	0.63
Merged-chr14-30192886-1	chr14	30192786	30192986	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	160600.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.42	1.26	2.28	1.61	6.14	6.59	1.66	7.15	0.98	8.54	4.02	5.95
Merged-chr4-122858096-2	chr4	122858001	122858201	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001358036)	TTS (NM_001358036)	21874.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.23	7.55	1.14	2.41	4.09	2.82	3.99	10.07	8.46	8.54	11.56	5.95
Merged-chr18-60373259-1	chr18	60373159	60373359	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021792)	promoter-TSS (NM_021792)	-357.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	3.23	3.02	1.14	0.8	0.0	1.88	1.0	1.4	3.74	9.04	0.5	6.89
Merged-chr9-41434829-1	chr9	41434729	41434929	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-40064.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	2.02	1.26	1.71	0.8	2.45	1.88	1.99	3.14	4.52	7.03	3.52	10.34
Merged-chr2-154659585-2	chr2	154659438	154659638	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	2512.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	1.62	3.52	0.57	0.0	3.27	1.25	1.66	1.43	4.13	0.5	4.02	4.07
Merged-chr9-116138706-1	chr9	116138606	116138806	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36657.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.65	1.51	9.7	4.42	6.14	5.02	4.32	6.5	5.11	5.52	2.01	2.19
Merged-chr4-142153726-1	chr4	142153626	142153826	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	56482.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	2.83	5.79	2.85	5.23	3.27	4.7	0.33	4.99	15.93	20.59	12.06	4.07
Merged-chr2-167629851-1	chr2	167629751	167629951	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	2154.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	4.44	6.04	1.14	0.0	2.45	1.88	1.0	1.85	3.54	2.51	1.51	2.82
Merged-chr1-118448445-1	chr1	118448345	118448545	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 2 of 39)	CT-rich|Low_complexity|Low_complexity	10820.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	5.25	2.77	1.71	2.41	11.45	2.82	0.33	4.49	6.69	5.52	7.03	2.82
Merged-chr18-46867008-1	chr18	46866908	46867108	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029008, intron 3 of 19)	intron (NM_029008, intron 3 of 19)	16969.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	3.63	1.26	3.42	3.22	0.82	5.02	2.33	1.49	0.2	0.0	0.0	0.94
Merged-chr9-119100520-2	chr9	119100435	119100635	+	652.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1943.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	9.29	2.77	3.42	3.22	9.41	7.84	2.66	5.16	9.83	8.03	9.04	5.64
Merged-chr7-16129687-2	chr7	16129554	16129754	+	652.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148946)	promoter-TSS (NM_148946)	-172.0	NM_001347561	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	11.31	6.54	2.28	2.01	6.95	6.59	6.64	5.66	7.67	4.02	9.04	3.45
Merged-chr15-58343381-2	chr15	58343283	58343483	+	652.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19214.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	4.04	8.05	9.13	6.03	7.77	4.39	7.97	8.1	7.08	5.52	6.53	8.14
Merged-chrX-97431634-2	chrX	97431509	97431709	+	652.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54400.0	NM_001161433	245527.0	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	6.06	5.28	6.28	4.02	9.0	11.6	4.32	7.74	5.31	7.53	8.54	4.7
Merged-chr8-124349926-2	chr8	124349830	124350030	+	652.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84006.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	6.46	2.01	10.27	4.42	2.45	6.9	1.0	3.64	16.92	10.04	8.04	9.4
Merged-chr6-83711203-2	chr6	83711109	83711309	+	652.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	-55.0	NM_011912	24113.0	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	6.46	2.52	3.42	3.62	7.36	7.21	2.99	5.19	10.03	4.52	8.04	5.95
Merged-chr13-98929139-3	chr13	98929044	98929244	+	652.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2760.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.86	8.55	3.42	3.22	8.59	5.96	4.98	6.53	12.39	7.03	7.03	7.83
Merged-chr16-38712132-3	chr16	38712060	38712260	+	652.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	875.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	6.46	8.55	6.85	0.0	4.91	4.08	1.66	5.78	9.44	9.54	12.06	11.59
Merged-chr17-48300448-3	chr17	48300391	48300591	+	652.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033405, exon 1 of 5)	5' UTR (NM_001033405, exon 1 of 5)	453.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	8.48	7.8	9.7	2.82	8.18	10.98	7.64	4.82	11.6	4.52	8.04	6.89
Merged-chr11-3129891-2	chr11	3129775	3129975	+	652.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_003517, exon 6 of 7)	non-coding (NR_003517, exon 6 of 7)	5854.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	8.48	7.04	7.42	8.85	16.36	9.72	10.96	3.79	3.34	3.01	2.51	2.51
Merged-chr5-64934469-2	chr5	64934368	64934568	+	652.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-910.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	10.5	9.06	10.27	2.82	4.5	4.39	4.98	6.5	17.11	4.02	10.05	6.89
Merged-chr1-143996223-2	chr1	143996138	143996338	+	652.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	7911.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	9.29	6.54	5.7	3.22	8.59	5.64	1.99	3.48	2.16	2.01	1.0	7.21
Merged-chr12-76496421-1	chr12	76496321	76496521	+	652.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36791.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	2.42	9.81	3.42	0.8	3.27	8.15	4.65	3.9	4.33	4.52	5.53	4.39
Merged-chr5-23453729-2	chr5	23453612	23453812	+	652.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026984, intron 2 of 25)	B2_Mm2|SINE|B2	19283.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	4.85	7.55	3.99	8.85	3.27	7.53	2.66	0.53	11.21	15.57	14.57	11.28
Merged-chr8-37224788-1	chr8	37224688	37224888	+	652.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200550.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.23	2.01	7.99	6.44	2.86	0.94	1.66	3.53	13.37	2.51	9.55	8.46
Merged-chr14-67811373-1	chr14	67811273	67811473	+	652.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 21 of 51)	intron (NM_177780, intron 21 of 51)	48372.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	2.42	3.52	2.28	0.0	0.82	4.7	1.33	1.29	12.78	5.52	13.06	7.83
Merged-chr18-67205951-2	chr18	67205782	67205982	+	652.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024190, exon 1 of 1)	exon (NM_024190, exon 1 of 1)	523.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.25	6.04	14.26	6.03	3.68	2.51	6.31	2.75	6.1	3.01	10.55	5.95
Merged-chr16-17559102-2	chr16	17558976	17559176	+	652.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145435, intron 3 of 7)	intron (NM_001145435, intron 3 of 7)	2171.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	5.65	5.79	1.14	7.24	5.73	2.51	4.65	4.43	2.36	2.01	8.04	1.57
Merged-chr2-144280223-2	chr2	144280078	144280278	+	652.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9274.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	1.62	5.79	6.28	9.25	4.09	4.08	3.65	10.04	4.13	6.53	5.53	5.64
Merged-chr11-67021138-3	chr11	67021034	67021234	+	652.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4020.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	4.44	8.55	8.56	3.22	5.32	8.15	2.99	4.4	11.01	6.53	15.58	6.89
Merged-chr2-35539676-1	chr2	35539576	35539776	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18782.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.44	8.55	3.42	2.01	5.32	5.64	1.99	4.74	5.51	3.51	4.52	5.95
Merged-chr1-34465625-2	chr1	34465510	34465710	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	L1MB5|LINE|L1	5864.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	4.28	9.13	6.84	1.64	3.14	3.32	5.38	6.49	4.02	7.03	7.21
Merged-chr2-38209334-1	chr2	38209234	38209434	+	652.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	78050.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.04	8.3	6.85	2.41	4.09	6.27	3.65	3.2	9.83	11.05	12.56	2.51
Merged-chr7-125582920-2	chr7	125582818	125583018	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20511.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	11.31	7.8	9.13	4.83	2.86	4.39	2.99	6.64	7.08	2.01	3.52	5.95
Merged-chr16-20540585-1	chr16	20540485	20540685	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009679, intron 4 of 10)	intron (NM_009679, intron 4 of 10)	5105.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	6.46	0.0	0.0	0.8	2.45	4.7	5.31	8.92	4.52	2.01	4.52	1.57
Merged-chr9-66980650-2	chr9	66980562	66980762	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5178.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	14.13	3.77	11.98	4.02	5.73	11.92	3.65	6.39	11.41	5.02	9.04	9.71
Merged-chr18-25554883-1	chr18	25554783	25554983	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	124865.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.63	1.51	3.42	1.21	6.95	6.27	2.99	5.69	5.11	6.53	3.52	4.39
Merged-chr1-86021760-2	chr1	86021635	86021835	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122732)	promoter-TSS (NM_001122732)	-207.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	4.85	2.77	1.14	6.44	0.0	6.59	1.66	1.68	4.13	12.05	3.01	5.33
Merged-chr15-95794439-2	chr15	95794336	95794536	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3593.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.27	6.29	0.0	4.02	10.64	11.6	4.32	4.21	12.19	10.04	6.03	8.14
Merged-chr4-41129600-2	chr4	41129484	41129684	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5245.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	8.48	4.53	9.7	3.22	4.91	4.08	2.66	6.2	11.41	10.04	11.05	4.07
Merged-chr11-117721962-3	chr11	117721855	117722055	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198022, exon 5 of 22)	exon (NM_198022, exon 5 of 22)	57693.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	12.92	7.29	4.56	4.83	8.18	15.37	9.3	11.3	9.24	5.02	11.05	4.07
Merged-chr8-83609312-2	chr8	83609220	83609420	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	772.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	8.88	6.29	2.85	2.82	11.86	4.7	5.98	5.24	5.51	11.05	2.01	6.58
Merged-chr8-119098418-1	chr8	119098318	119098518	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-246120.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	2.02	4.28	0.0	4.02	3.68	5.96	8.3	5.05	0.79	1.0	3.52	1.88
Merged-chr7-84197545-1	chr7	84197445	84197645	+	652.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45652.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.4	1.26	0.0	0.0	0.82	6.9	2.66	1.88	11.41	15.57	10.55	8.77
Merged-chr6-40430358-1	chr6	40430258	40430458	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	5777.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	1.62	1.01	3.42	0.8	7.36	10.66	0.33	4.99	6.1	1.51	5.53	4.07
Merged-chr4-116169241-2	chr4	116169180	116169380	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1682.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	7.67	2.52	4.56	4.42	1.64	5.02	6.98	3.59	4.72	6.53	14.57	12.53
Merged-chrX-161514584-2	chrX	161514486	161514686	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202450.0	NM_001103367	24004.0	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	2.42	9.56	7.99	8.04	5.32	3.14	6.31	9.03	4.13	1.0	9.55	0.63
Merged-chr5-139042556-1	chr5	139042456	139042656	+	652.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359099, intron 7 of 10)	intron (NM_001359099, intron 7 of 10)	-47603.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.86	4.53	4.56	8.04	11.05	6.59	6.31	4.51	2.56	2.01	3.01	4.39
Merged-chr2-93497428-3	chr2	93497342	93497542	+	652.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34492.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	12.92	7.04	11.98	7.24	1.64	3.76	7.64	5.13	6.1	3.01	14.57	11.28
Merged-chr5-111269868-2	chr5	111269773	111269973	+	652.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 13 of 22)	intron (NM_001267622, intron 13 of 22)	-60824.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	1.62	4.02	5.13	2.82	8.59	7.53	2.66	5.75	3.74	12.05	15.07	5.95
Merged-chr10-82909468-3	chr10	82909353	82909553	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42827.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	2.83	11.07	9.13	12.87	12.68	5.33	3.32	5.36	14.75	12.05	9.55	5.01
Merged-chr11-89005968-1	chr11	89005868	89006068	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	6565.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.27	5.28	1.14	1.61	8.59	6.27	3.65	5.02	3.15	7.03	1.51	4.39
Merged-chr7-80099924-3	chr7	80099831	80100031	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173011, intron 3 of 10)	ID4_|SINE|ID	15419.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	5.65	8.55	9.13	7.24	3.68	4.39	7.64	8.44	10.42	7.53	5.53	4.39
Merged-chr12-24952418-3	chr12	24952299	24952499	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026037, intron 9 of 12)	B3|SINE|B2	-22533.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	9.69	6.29	7.99	4.42	8.59	3.76	0.33	6.93	8.26	6.53	8.54	8.14
Merged-chr7-80406380-1	chr7	80406280	80406480	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081454)	promoter-TSS (NM_001081454)	-944.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	11.31	3.77	2.28	5.63	7.36	4.7	6.64	5.58	6.1	2.51	3.01	2.82
Merged-chr5-20865422-1	chr5	20865322	20865522	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	16702.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	10.09	3.77	6.85	4.02	9.0	8.15	3.99	4.68	10.62	2.51	6.03	4.39
Merged-chr5-124532129-1	chr5	124532029	124532229	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021430)	promoter-TSS (NM_021430)	-738.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	6.46	6.79	6.85	4.02	10.64	6.9	5.65	6.08	6.88	6.53	11.05	6.58
Merged-chr11-62643090-3	chr11	62642975	62643175	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	4974.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	6.86	7.55	10.27	8.85	16.36	17.87	5.31	4.91	8.85	15.06	10.05	3.76
Merged-chr9-57940124-3	chr9	57940054	57940254	+	652.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011352)	promoter-TSS (NM_011352)	19.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	5.65	7.55	5.13	1.61	9.0	5.96	6.31	8.58	7.28	8.54	10.05	7.52
Merged-chr8-82755172-2	chr8	82755038	82755238	+	652.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	18988.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	10.5	8.55	7.99	8.85	5.32	10.66	2.99	3.31	5.9	13.56	18.09	2.82
Merged-chr19-18716565-2	chr19	18716475	18716675	+	652.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177640, intron 1 of 1)	B3|SINE|B2	3339.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	8.48	4.28	5.7	4.83	18.0	5.96	2.33	8.83	8.65	12.05	14.07	11.9
Merged-chr7-45471163-2	chr7	45471098	45471298	+	652.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4300.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	4.04	4.02	5.7	4.83	1.64	3.76	5.31	5.3	8.06	8.03	5.53	6.89
Merged-chr8-22059910-2	chr8	22059837	22060037	+	652.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	137.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	7.27	9.06	2.28	10.46	7.36	11.92	5.98	10.96	12.39	17.57	11.56	4.7
Merged-chr11-83570374-3	chr11	83570266	83570466	+	652.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8270.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	8.88	7.55	8.56	9.65	14.32	11.29	5.31	8.07	6.49	10.54	9.04	7.83
Merged-chr10-58378024-3	chr10	58377908	58378108	+	652.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	B2_Mm2|SINE|B2	6554.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	9.69	7.29	6.85	1.61	9.0	8.15	6.98	7.6	8.85	10.04	16.58	2.51
Merged-chr8-115705940-2	chr8	115705851	115706051	+	652.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001025577, exon 1 of 1)	exon (NM_001025577, exon 1 of 1)	943.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.06	2.01	3.99	10.46	9.41	2.51	7.97	4.88	6.88	1.51	9.55	5.64
Merged-chr15-77757104-3	chr15	77756992	77757192	+	652.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357895)	promoter-TSS (NM_001357895)	-82.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.44	12.32	5.7	9.25	10.23	9.41	13.29	3.36	8.85	10.54	8.54	5.95
Merged-chr12-110706401-2	chr12	110706300	110706500	+	652.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10005.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	2.42	2.77	1.71	4.42	9.41	6.27	8.3	5.72	9.44	7.53	15.58	7.21
Merged-chr7-126749051-2	chr7	126748933	126749133	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10593.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	7.27	5.28	3.42	0.0	2.45	6.59	3.99	4.18	9.05	7.03	6.03	8.14
Merged-chr2-24297022-1	chr2	24296922	24297122	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5826.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	6.46	9.06	6.85	5.23	6.14	8.47	1.33	6.28	9.05	13.05	13.57	7.52
Merged-chr9-53376931-2	chr9	53376820	53377020	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176846, exon 6 of 6)	exon (NM_176846, exon 6 of 6)	-7103.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	4.04	7.55	1.14	0.4	3.27	5.02	6.31	5.55	6.69	9.54	9.55	5.64
Merged-chr2-148877192-1	chr2	148877092	148877292	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1680.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.04	5.79	1.14	0.8	0.41	5.33	2.66	5.61	6.29	2.51	2.51	2.19
Merged-chr9-48467068-3	chr9	48466977	48467177	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	12733.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	13.73	8.8	1.14	4.02	12.68	10.03	6.98	6.95	7.28	9.54	5.53	7.83
Merged-chr10-60082594-1	chr10	60082494	60082694	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026937, intron 9 of 10)	ORR1F|LTR|ERVL-MaLR	-23663.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	4.04	5.03	8.56	2.01	4.09	4.7	5.98	6.79	5.11	1.51	0.0	1.57
Merged-chr4-40233430-1	chr4	40233330	40233530	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172689, intron 2 of 17)	BGLII|LTR|ERVK	6395.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	14.13	5.28	6.28	3.22	20.86	10.66	6.98	5.64	7.28	11.05	5.53	5.01
Merged-chr5-81044648-1	chr5	81044548	81044748	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	23055.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.83	1.51	5.7	2.01	6.55	0.31	2.66	7.04	0.98	6.03	9.04	3.45
Merged-chr1-138174839-1	chr1	138174739	138174939	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	287.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.46	10.56	4.56	10.05	4.5	10.03	6.64	5.89	6.29	5.02	7.03	5.95
Merged-chr9-44269302-1	chr9	44269202	44269402	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163742)	promoter-TSS (NM_001163742)	-703.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	1.62	1.51	2.28	0.0	0.82	5.64	0.33	1.63	10.42	11.05	2.01	2.82
Merged-chr1-152555578-1	chr1	152555478	152555678	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69639.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	1.62	0.75	2.28	2.41	7.77	5.64	3.32	4.93	6.29	6.53	3.01	3.45
Merged-chr11-54711123-1	chr11	54711023	54711223	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76580.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.44	2.01	7.99	11.26	8.59	6.27	4.65	5.07	5.31	4.52	9.04	7.52
Merged-chr1-125426538-1	chr1	125426438	125426638	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	URR1A|DNA|hAT-Charlie	9189.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.04	4.78	1.14	3.62	5.73	8.15	3.65	10.4	6.88	7.03	8.04	5.95
Merged-chr4-24575743-1	chr4	24575643	24575843	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149739, intron 14 of 24)	L2|LINE|L2	79292.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	1.62	0.0	1.14	6.03	7.36	1.25	2.33	4.99	3.93	0.0	3.52	2.19
Merged-chr2-145898684-1	chr2	145898584	145898784	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4557.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.62	3.27	4.56	2.82	6.55	0.31	0.66	7.49	1.18	0.0	0.0	0.94
Merged-chr17-26231620-1	chr17	26231520	26231720	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	B4A|SINE|B4	12622.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.04	5.53	7.99	6.84	6.95	4.39	4.65	7.35	5.7	3.01	10.05	5.95
Merged-chr13-102722531-2	chr13	102722425	102722625	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	28967.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.04	6.04	7.99	2.41	7.77	13.17	3.99	2.52	17.51	7.53	11.56	10.65
Merged-chr15-101237072-1	chr15	101236972	101237172	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11886.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	12.52	4.02	3.99	3.62	15.14	8.78	2.99	4.71	10.23	8.54	7.54	4.7
Merged-chr10-24621786-3	chr10	24621682	24621882	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR3a|LTR|Gypsy	26340.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.85	6.04	11.98	1.61	6.55	7.21	2.66	7.04	7.67	13.05	8.04	4.07
Merged-chr5-88791737-1	chr5	88791637	88791837	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	26724.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	7.67	4.53	4.56	6.84	2.86	5.96	4.32	5.86	9.05	7.53	5.53	3.13
Merged-chr7-128139720-1	chr7	128139620	128139820	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021334, intron 14 of 29)	MTD|LTR|ERVL-MaLR	10152.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	2.42	9.31	2.85	12.87	3.27	4.08	1.66	5.94	3.54	4.52	8.54	5.64
Merged-chr10-87863447-1	chr10	87863347	87863547	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	2336.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	1.62	1.01	1.14	4.02	3.68	1.88	9.3	5.64	7.87	1.0	6.53	2.82
Merged-chr15-78383595-1	chr15	78383495	78383695	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163613, intron 3 of 4)	ORR1F|LTR|ERVL-MaLR	5174.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	3.23	2.52	19.4	5.63	5.32	5.02	7.64	5.07	1.97	0.0	10.55	5.95
Merged-chr11-100714703-1	chr11	100714603	100714803	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029307)	TTS (NM_029307)	853.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	12.52	7.55	3.99	6.44	5.73	4.7	0.66	2.75	7.08	4.02	8.04	6.89
Merged-chr10-13443738-1	chr10	13443638	13443838	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	30658.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	2.02	5.53	7.99	6.44	2.86	7.53	8.3	6.34	2.36	2.01	2.51	0.31
Merged-chr14-63846053-1	chr14	63845953	63846153	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14259.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	6.86	5.79	1.71	8.85	1.64	3.45	5.31	9.39	0.79	0.0	4.52	5.64
Merged-chr1-165845173-1	chr1	165845073	165845273	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113391, intron 1 of 7)	CpG	56492.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	3.63	4.53	2.28	5.63	1.64	3.45	5.31	4.32	4.92	2.01	2.01	2.82
Merged-chr7-100685828-2	chr7	100685721	100685921	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20814.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	6.46	3.27	1.71	0.0	5.73	5.96	2.66	6.06	11.21	11.55	11.05	4.07
Merged-chr2-84642268-1	chr2	84642168	84642368	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	7212.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	2.42	4.02	2.28	2.41	7.77	4.08	4.65	5.1	7.28	2.51	7.54	3.76
Merged-chr18-38422563-1	chr18	38422463	38422663	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	3656.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	1.21	2.77	2.28	1.21	4.09	2.2	5.98	5.69	6.49	3.51	4.52	5.33
Merged-chr10-85387927-1	chr10	85387827	85388027	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028709, exon 1 of 17)	exon (NM_028709, exon 1 of 17)	1113.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.81	1.51	1.14	0.4	0.0	0.63	1.0	1.15	6.29	5.52	14.07	8.46
Merged-chr9-122957571-2	chr9	122957473	122957673	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010620, intron 1 of 34)	MLTR14|LTR|ERV1	6492.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	8.08	8.3	9.13	6.84	5.32	4.39	4.32	2.5	9.83	9.04	7.54	7.83
Merged-chr10-17478878-1	chr10	17478778	17478978	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-244350.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.42	2.01	5.7	2.41	2.05	7.53	6.64	4.63	2.95	3.51	4.52	1.25
Merged-chr2-128179963-1	chr2	128179863	128180063	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	52388.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	7.27	5.03	6.85	5.63	7.36	17.87	2.66	5.89	3.54	2.01	2.01	3.76
Merged-chr16-89986176-1	chr16	89986076	89986276	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11477.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	1.21	3.52	0.57	0.4	0.0	2.2	6.31	3.73	1.77	1.51	3.01	2.19
Merged-chr10-96365430-1	chr10	96365330	96365530	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139223.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	3.27	3.42	4.02	2.86	1.25	5.98	4.71	0.98	5.52	6.53	0.63
Merged-chr14-77536923-1	chr14	77536823	77537023	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30055.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.02	9.81	2.28	12.87	2.45	4.08	3.65	7.09	2.75	0.5	5.02	2.51
Merged-chr19-37499520-1	chr19	37499420	37499620	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	34266.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.0	1.76	0.0	0.0	0.0	0.0	0.33	0.39	10.42	6.53	10.05	5.01
Merged-chr6-8410249-1	chr6	8410149	8410349	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	98912.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.4	1.51	1.14	0.0	2.45	6.9	2.99	5.94	1.57	1.51	2.51	3.13
Merged-chr16-93913570-1	chr16	93913470	93913670	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15997.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.42	0.0	0.0	0.0	0.82	0.0	0.33	0.0	6.29	12.55	1.0	9.4
Merged-chr5-99325394-1	chr5	99325294	99325494	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	(TG)n|Simple_repeat|Simple_repeat	-72467.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	10.09	4.28	7.42	7.64	6.14	5.64	9.3	3.48	4.33	3.51	1.0	2.19
Merged-chr14-64867113-2	chr14	64867035	64867235	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	82722.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	2.02	4.78	13.69	2.41	9.82	3.45	3.65	6.59	9.44	7.03	7.54	5.33
Merged-chr8-83737556-1	chr8	83737456	83737656	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	3755.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.44	4.78	7.42	0.0	8.18	4.08	2.66	0.93	7.67	8.54	9.04	5.33
Merged-chr11-118490172-1	chr11	118490072	118490272	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001359368)	TTS (NM_001359368)	13340.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	1.01	0.0	0.8	1.64	5.02	0.0	0.76	1.97	1.0	2.01	1.88
Merged-chr19-53553036-1	chr19	53552936	53553136	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23718.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	3.63	1.51	1.14	2.41	8.59	1.25	3.99	5.07	0.79	0.0	0.5	0.94
Merged-chr1-171263021-1	chr1	171262921	171263121	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172845)	TTS (NM_172845)	-7307.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	7.67	2.77	1.14	2.82	3.68	0.31	1.66	5.02	3.93	5.52	4.52	4.7
Merged-chr8-75101923-1	chr8	75101823	75102023	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7586.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.4	4.28	1.14	1.61	2.45	13.8	3.65	1.35	10.23	13.56	6.03	2.82
Merged-chr16-50613143-1	chr16	50613043	50613243	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-21989.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	1.62	7.04	8.56	7.24	4.5	4.7	5.65	8.58	4.92	8.54	3.52	3.76
Merged-chr5-97126182-1	chr5	97126082	97126282	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14586.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	14.94	6.04	1.14	2.41	4.09	6.9	1.33	6.64	3.54	4.52	9.04	4.7
Merged-chr14-69795536-1	chr14	69795436	69795636	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153514, intron 6 of 9)	intron (NM_153514, intron 6 of 9)	10009.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	2.42	1.01	5.7	0.8	0.82	10.03	1.0	5.21	6.49	4.02	5.53	3.45
Merged-chr16-35935925-1	chr16	35935825	35936025	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013371, intron 2 of 4)	RMER20C_Mm|LTR|ERVK	-2545.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	3.23	6.04	3.42	5.23	2.86	10.03	0.66	5.13	1.18	6.53	7.54	8.46
Merged-chr19-21077982-1	chr19	21077882	21078082	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26728.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.42	3.77	2.28	1.61	5.73	9.09	6.98	1.07	10.23	9.04	2.51	2.51
Merged-chr1-130987581-1	chr1	130987481	130987681	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-32264.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.44	5.53	7.99	3.62	2.45	6.59	1.0	1.09	6.69	1.51	9.04	1.25
Merged-chr9-118645057-1	chr9	118644957	118645157	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38348.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.02	0.25	1.14	1.21	5.73	0.94	2.66	9.36	3.15	2.51	3.01	0.31
Merged-chr10-94728341-1	chr10	94728241	94728441	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029852, intron 4 of 15)	B1_Mm|SINE|Alu	39551.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	2.83	3.02	3.42	2.41	2.45	5.02	1.99	2.83	8.46	0.0	1.51	7.83
Merged-chr13-69536014-1	chr13	69535914	69536114	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-2150.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	11.31	2.77	3.42	2.41	3.68	5.96	5.31	6.67	2.75	7.03	0.5	3.45
Merged-chr1-131378132-1	chr1	131378032	131378232	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-98569.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.25	7.55	1.14	2.41	4.09	10.98	4.65	1.6	3.93	6.03	3.52	1.57
Merged-chr7-144980002-1	chr7	144979902	144980102	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40077.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.46	1.51	3.99	6.03	6.55	3.14	2.33	7.68	1.18	4.02	0.5	0.94
Merged-chr6-136513791-1	chr6	136513691	136513891	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5060.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.42	3.52	10.84	4.83	0.0	0.0	0.0	0.42	7.08	11.55	6.03	11.9
Merged-chr18-5139148-1	chr18	5139048	5139248	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26583.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	6.86	3.02	0.0	6.84	7.77	4.7	1.99	6.34	9.64	6.03	5.02	3.13
Merged-chr2-157075862-1	chr2	157075762	157075962	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	3403.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.63	5.79	4.56	2.41	6.55	8.78	2.99	5.8	4.13	2.51	1.0	2.82
Merged-chr18-81588054-2	chr18	81587952	81588152	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	404028.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	6.46	0.5	6.28	10.86	6.95	2.2	4.98	6.67	7.08	9.54	18.59	9.08
Merged-chr16-65351221-1	chr16	65351121	65351321	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-169408.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.25	3.77	6.28	3.22	9.82	3.76	2.66	3.7	3.15	7.03	9.04	5.01
Merged-chr17-28553273-2	chr17	28553160	28553360	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001034871)	TTS (NM_001034871)	3773.0	NM_001034871	328788.0	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	11.71	4.02	0.0	7.24	6.14	13.48	4.65	3.79	12.0	7.03	9.55	7.21
Merged-chr5-140396733-1	chr5	140396633	140396833	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-7425.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.4	4.28	5.13	0.8	5.32	4.08	3.65	2.24	10.82	9.04	2.51	5.33
Merged-chr8-68735193-2	chr8	68735031	68735231	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252623)	promoter-TSS (NM_001252623)	15.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	6.46	3.52	6.28	5.63	6.14	4.39	8.97	4.96	2.16	4.02	8.54	4.39
Merged-chr9-77596564-2	chr9	77596464	77596664	+	651.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40168.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	6.46	7.8	3.42	4.42	11.45	11.6	3.32	6.48	13.37	7.03	17.08	5.01
Merged-chr4-109245802-2	chr4	109245701	109245901	+	651.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033226, intron 5 of 7)	intron (NM_001033226, intron 5 of 7)	10169.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	5.25	5.53	10.84	7.64	7.77	18.19	5.65	6.53	1.77	2.51	3.52	1.57
Merged-chr7-101381723-2	chr7	101381612	101381812	+	651.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	3590.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.42	1.26	1.71	11.26	7.36	4.7	4.65	7.18	10.62	17.07	10.05	7.21
Merged-chr8-105303585-2	chr8	105303484	105303684	+	651.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-2017.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	2.83	2.26	5.7	4.02	7.36	1.88	3.65	5.1	11.21	15.57	15.58	9.71
Merged-chr3-31340782-1	chr3	31340682	31340882	+	651.833313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-30463.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	9.29	9.31	14.26	11.26	0.41	0.0	1.33	0.67	0.0	0.0	3.01	0.0
Merged-chr9-7814086-2	chr9	7813973	7814173	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	22733.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	9.69	7.55	5.7	7.24	3.68	10.66	9.63	6.62	20.85	9.54	8.54	3.45
Merged-chr7-67307332-2	chr7	67307233	67307433	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	65525.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	11.31	5.03	3.42	6.44	8.18	7.84	2.66	11.13	7.67	8.03	5.02	8.46
Merged-chr6-67069934-3	chr6	67069868	67070068	+	651.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-32561.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.65	4.28	1.71	7.64	10.64	6.59	7.97	5.36	5.9	2.51	9.04	4.07
Merged-chr2-180276964-2	chr2	180276841	180277041	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_173031)	TTS (NM_173031)	-3476.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.81	4.02	4.56	4.02	11.86	1.88	6.64	6.45	7.08	5.02	3.52	5.01
Merged-chr8-109707061-2	chr8	109706958	109707158	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	1039.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	6.46	4.78	2.28	7.64	9.41	9.09	3.65	4.96	7.08	10.04	12.56	5.01
Merged-chr7-143506062-3	chr7	143505938	143506138	+	651.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3514.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	8.48	5.53	2.28	7.24	4.5	5.33	2.99	5.86	11.41	7.03	22.11	6.27
Merged-chr11-30676317-3	chr11	30676246	30676446	+	651.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep1527|LTR|LTR	-26950.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	2.02	6.54	5.13	9.25	4.91	5.64	4.98	5.75	9.24	14.06	12.56	2.19
Merged-chr11-3921787-3	chr11	3921762	3921962	+	651.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130458, intron 8 of 9)	intron (NM_001130458, intron 8 of 9)	-7198.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	6.06	1.76	10.27	4.02	2.45	5.96	2.33	3.17	7.28	3.51	8.04	1.57
Merged-chr8-120103735-1	chr8	120103635	120103835	+	651.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2263.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	2.42	2.52	3.42	1.61	6.14	5.33	7.31	6.06	4.33	3.51	5.02	1.88
Merged-chr13-41084657-2	chr13	41084550	41084750	+	651.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4944.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	1.62	2.52	1.14	2.82	5.32	12.23	4.98	6.87	6.1	10.04	12.56	4.07
Merged-chr14-121589562-2	chr14	121589463	121589663	+	651.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-84309.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	6.06	4.78	4.56	3.22	6.95	7.84	4.98	8.3	10.62	7.03	2.51	4.7
Merged-chr4-116789149-3	chr4	116789060	116789260	+	651.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	18399.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	9.69	4.78	7.42	9.25	7.77	5.33	1.33	7.82	10.23	12.55	10.55	5.64
Merged-chr12-13215083-3	chr12	13214956	13215156	+	651.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34118.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	10.09	6.04	1.14	8.45	4.5	9.09	3.99	9.76	9.24	6.03	16.08	8.46
Merged-chr14-17916716-2	chr14	17916616	17916816	+	651.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-64928.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	10.09	6.04	2.28	7.64	6.55	4.39	5.65	16.37	4.52	11.55	6.53	4.7
Merged-chr17-34591649-3	chr17	34591554	34591754	+	651.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-817.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	12.92	6.29	13.12	5.23	9.0	5.02	11.63	6.95	11.21	16.07	9.55	1.57
Merged-chr3-137611362-3	chr3	137611267	137611467	+	651.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12305.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	16.96	3.77	9.13	8.85	6.55	10.03	8.97	5.75	7.67	6.03	13.57	8.14
Merged-chr12-70113605-3	chr12	70113566	70113766	+	651.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1631.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	2.42	5.53	8.56	4.02	3.27	6.9	0.66	5.69	9.05	8.03	2.51	5.33
Merged-chr10-127626682-3	chr10	127626617	127626817	+	651.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-5569.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	9.29	8.05	0.0	4.42	7.77	15.05	9.3	5.75	7.87	13.05	7.54	3.13
Merged-chr11-69465903-3	chr11	69465795	69465995	+	651.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 39 of 85)	intron (NM_001081330, intron 39 of 85)	-52220.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.88	9.56	13.69	5.63	4.09	21.01	8.64	3.2	14.16	10.04	10.55	5.95
Merged-chr6-125481249-2	chr6	125481165	125481365	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	13495.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.83	6.29	4.56	3.62	4.91	5.33	2.66	6.73	9.44	8.03	7.54	6.58
Merged-chr19-11851125-1	chr19	11851025	11851225	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4826.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	5.25	8.05	9.13	3.22	4.5	0.94	4.32	8.07	0.2	0.0	0.0	0.94
Merged-chr15-25525598-2	chr15	25525497	25525697	+	651.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96953.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.65	4.78	9.13	10.05	8.18	2.2	3.65	6.2	5.7	14.56	11.05	4.39
Merged-chr7-98968194-1	chr7	98968094	98968294	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	129349.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.23	3.02	0.57	1.61	5.32	6.59	2.66	4.07	2.36	3.01	0.0	1.25
Merged-chr11-4095278-2	chr11	4095195	4095395	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026443, exon 1 of 4)	5' UTR (NM_026443, exon 1 of 4)	136.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	6.06	13.08	7.99	3.62	3.27	7.84	4.65	2.75	14.16	12.05	3.52	12.53
Merged-chr11-101971625-1	chr11	101971525	101971725	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-4610.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	6.06	4.78	2.28	12.07	7.36	6.27	2.99	5.36	10.42	10.04	13.06	4.07
Merged-chr6-99026314-2	chr6	99026211	99026411	+	651.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1987.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.46	12.83	7.99	10.05	3.68	2.2	4.65	4.43	13.57	3.01	6.53	6.58
Merged-chr10-88304506-1	chr10	88304406	88304606	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52569.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	7.27	7.8	8.56	3.22	7.77	5.96	2.33	13.68	4.72	6.53	11.05	5.01
Merged-chr10-68714559-2	chr10	68714460	68714660	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-9186.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.42	1.51	0.0	1.61	7.36	3.14	1.99	8.38	8.65	8.03	26.13	7.83
Merged-chr9-118640098-1	chr9	118639998	118640198	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	33389.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.25	3.52	2.85	2.41	6.95	5.64	1.66	6.48	4.72	4.52	6.03	3.45
Merged-chr2-62639955-1	chr2	62639855	62640055	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	6300.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	1.62	2.52	2.28	4.02	5.32	6.59	2.66	6.11	6.69	10.54	7.03	1.57
Merged-chr3-105849539-1	chr3	105849439	105849639	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21319.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	0.0	0.0	0.0	1.21	9.82	5.96	5.31	4.74	0.59	0.0	0.5	1.88
Merged-chr11-75291086-2	chr11	75290986	75291186	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57297.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	8.48	1.76	6.85	11.26	9.0	15.37	3.99	7.09	11.01	9.04	4.52	7.83
Merged-chr13-119755742-2	chr13	119755583	119755783	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175538, intron 1 of 3)	CpG	199.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	6.86	2.26	2.85	5.63	0.82	8.47	3.65	3.81	3.74	3.51	4.52	6.27
Merged-chr18-69439529-1	chr18	69439429	69439629	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	93369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.42	0.75	1.14	0.4	5.73	5.02	4.98	8.13	2.75	1.51	1.51	5.64
Merged-chr10-67113107-2	chr10	67113005	67113205	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	-14153.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	2.83	6.54	3.42	5.63	10.23	11.6	8.64	1.15	12.0	11.05	8.54	6.89
Merged-chr10-66873594-2	chr10	66873496	66873696	+	651.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46788.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	12.11	10.31	11.41	1.61	8.18	9.09	3.99	3.59	9.44	15.06	5.02	2.82
Merged-chr5-100821659-1	chr5	100821559	100821759	+	651.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	-724.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	8.08	1.76	6.28	6.44	6.95	4.39	6.98	6.5	3.74	9.54	5.02	6.27
Merged-chr3-95624342-1	chr3	95624242	95624442	+	651.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-638.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.06	5.03	6.85	2.41	9.41	4.7	4.32	0.62	9.83	5.52	13.57	10.02
Merged-chr9-54963782-1	chr9	54963682	54963882	+	651.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12828.0	NM_145229	246735.0	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	4.85	6.04	11.41	5.63	2.45	7.84	3.65	2.47	10.42	5.02	15.07	9.4
Merged-chr7-97125524-3	chr7	97125385	97125585	+	651.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	43734.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	9.29	5.53	23.96	8.04	5.73	4.08	2.99	13.23	18.1	6.03	12.56	6.89
Merged-chr3-109747779-3	chr3	109747692	109747892	+	651.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	173785.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.69	10.82	7.42	8.04	1.64	8.78	4.98	4.23	11.6	4.52	10.05	5.95
Merged-chr8-108315313-3	chr8	108315177	108315377	+	651.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269400.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.06	7.29	3.99	7.24	5.32	8.47	4.65	5.36	12.59	9.04	9.55	7.21
Merged-chr9-106365527-2	chr9	106365427	106365627	+	651.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3105.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.44	3.52	3.42	1.61	8.59	8.15	1.99	5.83	7.87	9.54	7.03	10.34
Merged-chr9-7766792-2	chr9	7766681	7766881	+	651.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	2616.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	12.11	6.54	11.98	4.42	5.73	10.98	7.31	6.73	9.24	6.03	6.03	5.33
Merged-chrX-52575749-2	chrX	52575633	52575833	+	651.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045367)	promoter-TSS (NR_045367)	-110.0	NR_045367	100504594.0	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	17.77	6.54	10.84	10.86	2.45	3.14	7.97	3.25	12.59	7.03	14.57	5.33
Merged-chr18-52598448-2	chr18	52598333	52598533	+	651.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17482.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	1.62	4.28	1.71	3.62	6.55	13.17	5.31	3.5	15.54	12.55	11.05	8.46
Merged-chr3-88148488-3	chr3	88148373	88148573	+	651.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6101.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.88	9.06	10.27	5.63	5.73	5.96	1.66	7.99	6.29	12.05	13.06	7.83
Merged-chr4-58439820-2	chr4	58439734	58439934	+	651.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	ORR1D-int|LTR|ERVL-MaLR	1264.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	7.27	13.08	7.99	5.23	7.36	15.68	4.32	4.04	14.16	12.05	11.05	7.52
Merged-chr8-64896958-2	chr8	64896864	64897064	+	651.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-47040.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	7.27	2.52	9.13	5.23	9.0	8.15	7.31	22.43	7.87	9.04	15.07	7.52
Merged-chr7-48775654-2	chr7	48775562	48775762	+	651.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13341.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	5.65	2.01	5.7	6.44	15.14	9.41	9.63	4.96	9.24	12.05	18.59	4.7
Merged-chr8-123189006-2	chr8	123188910	123189110	+	651.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	2775.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	9.69	4.28	13.12	5.63	5.32	5.33	9.3	6.31	6.1	2.51	11.05	3.76
Merged-chr7-97079313-2	chr7	97079211	97079411	+	651.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2440.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.48	2.52	1.14	5.23	8.59	7.21	2.99	7.57	10.82	7.03	6.53	6.58
Merged-chr6-97211303-3	chr6	97211197	97211397	+	651.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	505.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	7.67	9.31	7.99	6.03	7.77	5.33	9.63	5.89	9.64	9.04	4.02	2.51
Merged-chr2-90613183-3	chr2	90613091	90613291	+	651.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32544.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	9.69	6.54	9.7	8.85	9.0	8.47	1.99	4.93	13.57	11.55	8.54	6.27
Merged-chr16-31907158-1	chr16	31907058	31907258	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26693.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	2.42	1.51	3.42	3.62	6.55	6.27	1.33	5.19	11.21	3.51	8.04	6.58
Merged-chr2-58574242-1	chr2	58574142	58574342	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	6908.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.23	3.02	6.28	1.61	5.73	4.39	2.99	5.58	6.1	9.04	11.05	8.14
Merged-chr1-155025961-1	chr1	155025861	155026061	+	651.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57303.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.02	4.53	4.56	5.63	5.73	5.33	2.66	2.92	8.85	5.02	9.55	4.7
Merged-chr11-105182270-1	chr11	105182170	105182370	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027956)	promoter-TSS (NR_027956)	743.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	2.42	10.31	5.13	6.44	2.86	7.21	15.61	4.88	14.16	17.07	14.07	5.64
Merged-chr15-34022148-2	chr15	34022061	34022261	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60558.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	6.06	2.52	1.71	2.41	6.55	3.45	1.33	4.37	2.36	6.53	14.07	11.59
Merged-chr3-104227701-1	chr3	104227601	104227801	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-7295.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	2.02	3.77	0.57	3.22	5.32	5.96	2.66	6.62	2.36	6.53	4.52	2.51
Merged-chr1-191175716-1	chr1	191175616	191175816	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	7617.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	8.08	10.06	1.14	2.41	4.09	7.21	2.33	1.4	6.1	7.03	3.01	1.25
Merged-chr6-17727672-1	chr6	17727572	17727772	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-15920.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.81	0.5	1.71	1.21	6.95	2.51	0.66	5.75	2.75	3.51	7.54	1.57
Merged-chr7-132786185-1	chr7	132786085	132786285	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	750.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	1.01	9.13	0.0	3.68	16.31	5.65	5.16	0.2	0.5	0.0	0.0
Merged-chr17-31871087-1	chr17	31870987	31871187	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15283.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	5.25	6.54	0.57	8.85	2.86	9.41	4.65	4.79	2.56	5.52	1.0	3.13
Merged-chr15-73069066-1	chr15	73068966	73069166	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7862.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.44	1.26	2.85	5.23	1.23	10.35	1.0	4.79	11.21	5.52	4.02	0.0
Merged-chr10-94055148-1	chr10	94055048	94055248	+	651.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	19147.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	1.62	7.8	4.56	3.22	4.91	2.51	1.33	2.5	7.47	1.0	11.05	5.01
Merged-chr3-86129959-1	chr3	86129859	86130059	+	651.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001082414, exon 15 of 15)	3' UTR (NM_001082414, exon 15 of 15)	8899.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	4.44	1.26	5.13	6.44	3.27	2.82	0.66	3.67	10.03	7.53	16.08	0.94
Merged-chr3-137753092-1	chr3	137752992	137753192	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30523.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	1.62	4.02	4.56	3.62	8.18	3.76	0.66	4.99	7.47	6.03	3.52	3.45
Merged-chr6-81372401-1	chr6	81372301	81372501	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	523262.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	1.62	1.51	0.0	6.44	0.0	6.27	3.99	5.92	10.23	4.02	7.03	5.64
Merged-chr11-98962432-1	chr11	98962332	98962532	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	1961.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.65	5.53	11.41	8.45	9.0	0.0	2.66	7.01	3.93	3.51	7.03	7.52
Merged-chr11-118401225-1	chr11	118401125	118401325	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	734.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	4.85	3.27	3.42	4.42	1.23	5.64	3.65	4.07	7.08	6.03	3.01	5.33
Merged-chr5-30864527-1	chr5	30864427	30864627	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2720.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.75	3.42	1.21	4.5	2.51	3.99	5.36	3.74	2.01	6.03	3.13
Merged-chr15-74896477-2	chr15	74896393	74896593	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14789.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	4.85	3.77	3.42	1.61	5.73	7.21	0.66	9.9	8.46	12.55	5.53	8.14
Merged-chr17-67317067-1	chr17	67316967	67317167	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MLT1E1A|LTR|ERVL-MaLR	37392.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.62	1.26	1.14	2.41	6.95	3.14	3.99	5.86	0.79	0.5	1.51	0.31
Merged-chr5-45580580-2	chr5	45580480	45580680	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021416, exon 5 of 16)	exon (NM_021416, exon 5 of 16)	-58695.0	NR_102378	319251.0	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	6.46	10.31	2.85	5.23	6.14	5.02	7.64	5.72	1.77	2.01	6.53	2.19
Merged-chr12-110711051-1	chr12	110710951	110711151	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14656.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.81	1.01	2.85	6.03	10.23	1.57	1.33	0.73	0.79	2.01	1.51	1.25
Merged-chr2-167641585-2	chr2	167641503	167641703	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-9598.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	4.85	2.52	5.13	7.64	6.95	9.72	5.98	7.77	2.95	8.03	7.54	7.21
Merged-chr9-77719175-1	chr9	77719075	77719275	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-35360.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.65	3.02	9.7	4.42	3.27	5.02	1.99	7.91	0.2	1.0	2.01	0.63
Merged-chr19-56475038-2	chr19	56474950	56475150	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172641, intron 7 of 12)	intron (NM_172641, intron 7 of 12)	13413.0	NM_172641	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	4.85	5.28	5.7	0.4	2.45	6.59	9.63	7.09	8.06	7.03	5.02	7.52
Merged-chr1-39685987-1	chr1	39685887	39686087	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145660, intron 7 of 14)	intron (NM_001145660, intron 7 of 14)	-34805.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	5.65	4.02	2.28	7.24	4.5	5.96	5.31	8.3	6.29	4.02	2.51	5.33
Merged-chr12-110373573-1	chr12	110373473	110373673	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-73606.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	1.62	2.77	2.28	5.23	3.27	5.33	3.32	4.49	6.49	1.51	6.03	5.33
Merged-chr4-117199202-1	chr4	117199102	117199302	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-16578.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.4	0.5	0.57	0.0	9.41	13.48	5.98	6.59	0.0	0.0	0.0	0.0
Merged-chr19-3586775-1	chr19	3586675	3586875	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-11026.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.62	6.54	1.71	2.82	9.41	3.76	3.99	3.93	3.15	3.51	5.53	4.39
Merged-chr15-5288685-1	chr15	5288585	5288785	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44498.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.81	2.52	1.14	2.41	1.64	4.08	6.64	4.23	4.13	4.02	6.53	3.13
Merged-chr7-128345107-2	chr7	128345005	128345205	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46974.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	4.44	5.28	3.99	0.8	4.5	6.27	1.33	6.2	6.29	17.07	11.56	7.21
Merged-chr11-116102602-1	chr11	116102502	116102702	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7633.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.81	4.53	13.12	0.8	2.86	3.76	3.32	5.21	4.33	6.53	5.53	2.82
Merged-chrX-20307472-2	chrX	20307361	20307561	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15697.0	NM_177353	236727.0	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	6.86	7.04	4.56	11.66	9.41	8.78	10.3	14.58	8.06	7.03	7.03	5.01
Merged-chr6-46231320-1	chr6	46231220	46231420	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 9 of 23)	MLT1F-int|LTR|ERVL-MaLR	-1013076.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.23	2.52	0.0	1.61	4.09	1.25	5.65	9.0	1.57	1.51	3.52	3.13
Merged-chr3-104856276-1	chr3	104856176	104856376	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009797, intron 1 of 9)	ORR1B2|LTR|ERVL-MaLR	8229.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	1.62	5.28	5.7	5.23	2.86	3.76	4.32	7.46	4.52	6.53	7.03	9.4
Merged-chr7-90822332-1	chr7	90822232	90822432	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-268454.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.4	0.5	1.14	0.0	0.41	4.39	5.98	6.34	2.36	0.0	1.51	0.31
Merged-chr16-38695417-1	chr16	38695317	38695517	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	17618.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	2.83	4.28	9.13	7.64	10.64	6.59	3.99	5.8	5.9	12.55	12.56	7.21
Merged-chr17-25919259-1	chr17	25919159	25919359	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	CpG	455.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	5.65	4.28	1.71	4.02	4.5	5.02	4.98	5.89	8.65	4.02	16.58	5.95
Merged-chr12-76944882-1	chr12	76944782	76944982	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	17366.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.23	3.02	2.28	2.41	8.18	2.2	0.0	4.6	4.13	4.52	6.03	1.57
Merged-chr3-20023232-1	chr3	20023132	20023332	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	12078.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.81	1.51	2.28	3.22	4.09	0.63	6.64	6.25	4.72	3.01	3.01	0.63
Merged-chr10-122553270-1	chr10	122553170	122553370	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16621.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.04	3.27	9.13	2.01	7.36	5.02	8.97	5.02	7.28	8.54	13.57	5.33
Merged-chr2-131353600-3	chr2	131353508	131353708	+	650.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-716.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	3.23	7.29	1.14	7.64	9.82	4.39	4.65	5.07	12.19	10.54	4.02	6.27
Merged-chr7-138840907-3	chr7	138840811	138841011	+	650.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	5356.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	2.42	6.79	12.55	8.45	6.14	7.84	5.98	6.59	9.44	8.03	19.09	6.58
Merged-chr3-96503255-2	chr3	96503154	96503354	+	650.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21931.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	8.48	10.06	10.27	8.04	9.82	8.78	1.99	10.07	8.26	5.02	8.04	5.64
Merged-chr17-15825625-2	chr17	15825567	15825767	+	650.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 1 of 2)	CpG	919.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	9.69	7.55	10.84	15.69	6.55	10.66	13.29	8.69	9.24	1.0	12.06	6.58
Merged-chr4-43530801-2	chr4	43530700	43530900	+	650.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011602)	TTS (NM_011602)	-7246.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.63	4.53	9.7	2.01	6.95	7.21	3.99	9.08	9.05	7.03	13.06	5.64
Merged-chr13-43739793-1	chr13	43739693	43739893	+	650.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23002.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	8.88	6.79	5.13	2.41	15.55	10.66	7.31	6.56	8.26	9.04	15.58	7.52
Merged-chr9-41121211-3	chr9	41121097	41121297	+	650.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	36865.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.06	8.8	13.12	7.24	8.18	8.47	7.31	8.92	10.03	11.55	6.53	5.95
Merged-chr2-77282320-3	chr2	77282228	77282428	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1736.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	10.5	4.02	10.27	7.24	14.73	8.78	6.64	16.37	27.34	9.54	11.05	7.21
Merged-chr8-13154344-2	chr8	13154243	13154443	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4818.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	7.27	8.3	2.28	5.63	2.05	7.53	9.63	5.02	6.49	9.04	8.04	5.33
Merged-chr19-43624143-2	chr19	43624038	43624238	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11813.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	15.34	6.54	11.98	12.87	6.55	3.45	4.65	5.64	9.64	9.04	10.05	6.89
Merged-chr5-114379333-2	chr5	114379211	114379411	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159941, intron 1 of 6)	intron (NM_001159941, intron 1 of 6)	1194.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	2.42	1.01	1.14	4.42	5.32	6.9	3.32	6.95	4.13	4.02	11.56	9.71
Merged-chr17-71286894-1	chr17	71286794	71286994	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24117.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.42	2.01	2.28	4.83	7.77	7.53	8.64	5.72	5.9	16.07	0.5	2.82
Merged-chr4-132039062-2	chr4	132038964	132039164	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	LTR104_Mam|LTR|Gypsy	10014.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.46	4.78	15.97	8.04	22.91	5.33	3.99	6.39	8.26	7.03	17.59	2.82
Merged-chr9-31252537-1	chr9	31252437	31252637	+	650.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18864.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	4.44	6.54	4.56	2.01	9.82	3.14	2.99	9.28	7.67	10.04	11.56	8.77
Merged-chr13-44292629-4	chr13	44292513	44292713	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76126.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	5.65	8.8	10.27	4.02	4.5	15.05	2.33	7.18	4.52	6.53	8.04	5.33
Merged-chr9-44126289-3	chr9	44126191	44126391	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	8194.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	6.46	6.54	11.98	2.01	7.36	16.62	8.97	4.79	10.03	15.57	8.04	7.21
Merged-chr1-66814868-2	chr1	66814779	66814979	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2716.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	4.85	2.52	2.85	3.22	9.0	6.59	7.64	4.99	7.67	5.52	13.06	11.9
Merged-chr7-104353980-1	chr7	104353880	104354080	+	650.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-622.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	6.06	4.78	0.0	4.42	5.73	3.14	8.3	4.91	3.54	3.01	2.51	2.19
Merged-chr10-95476148-1	chr10	95476048	95476248	+	650.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25801.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	3.63	3.27	5.7	6.84	7.77	11.29	8.64	5.92	7.28	3.51	3.52	4.39
Merged-chr13-64110522-1	chr13	64110422	64110622	+	650.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	18808.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.62	9.64	6.03	18.59	7.21
Merged-chr14-70206007-2	chr14	70205912	70206112	+	650.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	10.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	7.27	5.03	1.14	4.83	7.77	8.47	5.98	4.57	7.47	5.02	3.52	9.71
Merged-chr11-54617863-2	chr11	54617765	54617965	+	650.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 7 of 28)	MLT1A0|LTR|ERVL-MaLR	21719.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.44	5.28	5.13	4.02	3.27	10.66	5.65	4.93	8.06	2.51	13.06	8.14
Merged-chr7-49753294-2	chr7	49753207	49753407	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5799.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	7.27	8.8	7.42	6.44	5.73	6.9	6.98	5.07	5.7	4.02	11.05	5.64
Merged-chr18-30046176-1	chr18	30046076	30046276	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-226689.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.04	1.01	0.0	2.82	2.86	5.33	4.32	7.99	0.79	0.5	0.5	0.0
Merged-chr8-60897421-1	chr8	60897321	60897521	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028299, intron 4 of 7)	LTR67B|LTR|ERVL	7028.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	1.21	1.76	2.85	3.62	0.41	6.27	4.65	4.54	1.18	1.0	2.51	7.83
Merged-chr6-142735531-2	chr6	142735429	142735629	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21157.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	4.85	2.01	7.42	8.04	7.77	5.33	1.99	8.89	10.62	12.05	12.06	5.01
Merged-chr3-122274962-2	chr3	122274861	122275061	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153806, intron 1 of 6)	intron (NM_153806, intron 1 of 6)	547.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	6.46	2.52	5.7	3.22	7.77	10.03	6.64	6.0	9.44	10.54	8.04	4.7
Merged-chr7-16010053-2	chr7	16009945	16010145	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10550.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	4.04	7.04	14.26	7.64	2.86	3.14	2.99	10.88	8.65	10.54	8.04	3.45
Merged-chr19-7438500-2	chr19	7438421	7438621	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	15948.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	10.5	7.04	7.42	9.25	4.5	7.21	4.32	4.15	4.52	13.56	7.03	6.27
Merged-chr1-151820743-1	chr1	151820643	151820843	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	65369.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	5.25	6.04	3.42	7.24	5.73	6.59	4.32	5.61	6.1	3.01	4.02	3.13
Merged-chr7-16243379-1	chr7	16243279	16243479	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	775.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.81	2.77	2.28	3.22	2.86	1.88	4.32	6.2	4.52	4.02	2.51	1.57
Merged-chr18-4312099-1	chr18	4311999	4312199	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40854.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	2.02	4.53	6.85	3.62	6.14	3.14	6.98	7.04	4.33	1.51	9.55	1.57
Merged-chr6-149207277-2	chr6	149207176	149207376	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18564.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	4.04	0.0	0.0	2.82	5.32	4.08	8.64	7.35	9.44	11.05	11.05	5.95
Merged-chr7-24407097-2	chr7	24406939	24407139	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028047, intron 5 of 13)	intron (NM_028047, intron 5 of 13)	7411.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.23	6.54	2.85	2.01	4.09	5.96	6.64	2.66	4.92	1.51	6.03	2.19
Merged-chr7-65371139-2	chr7	65371058	65371258	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163574)	promoter-TSS (NM_001163574)	86.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	5.65	6.29	2.85	7.24	5.32	6.59	4.98	8.58	4.92	3.51	6.03	2.82
Merged-chr10-11369977-1	chr10	11369877	11370077	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010146, intron 1 of 3)	ORR1G|LTR|ERVL-MaLR	26532.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	3.23	3.02	1.71	7.24	6.95	3.14	5.98	4.37	2.16	7.53	3.01	1.88
Merged-chr8-35709212-1	chr8	35709112	35709312	+	650.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117347.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	1.62	2.01	1.14	0.8	0.82	0.0	0.66	2.3	9.64	8.54	8.04	6.27
Merged-chr9-44249686-2	chr9	44249591	44249791	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133226, exon 6 of 11)	exon (NM_133226, exon 6 of 11)	1773.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	6.46	2.26	7.99	3.22	8.59	6.9	1.66	7.82	7.67	7.53	10.05	3.45
Merged-chr4-128824401-1	chr4	128824301	128824501	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18289.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.63	5.03	2.28	3.22	1.23	6.59	4.65	4.43	5.9	2.51	7.03	5.33
Merged-chr14-76763044-2	chr14	76762934	76763134	+	650.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_153763)	TTS (NR_153763)	2903.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	9.29	5.79	8.56	7.64	7.77	7.21	3.99	3.62	0.98	0.5	0.0	0.31
Merged-chr8-105826582-3	chr8	105826492	105826692	+	650.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145824, intron 1 of 13)	intron (NM_145824, intron 1 of 13)	758.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	17.77	6.79	9.13	5.23	4.91	5.02	3.32	8.38	12.39	6.53	9.55	7.52
Merged-chr11-103272207-2	chr11	103272108	103272308	+	650.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.25	3.77	4.56	4.83	6.14	9.41	5.98	4.99	7.87	15.06	7.03	7.21
Merged-chr6-97214177-2	chr6	97214081	97214281	+	650.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	3389.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	11.31	6.54	7.42	12.07	10.64	4.7	7.31	9.14	6.49	5.02	5.53	4.07
Merged-chr9-22368077-2	chr9	22367961	22368161	+	650.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028390, intron 8 of 23)	G-rich|Low_complexity|Low_complexity	21145.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.63	4.78	3.42	2.41	10.23	6.27	8.3	6.14	8.85	7.53	13.06	2.82
Merged-chr2-27676503-1	chr2	27676403	27676603	+	650.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-698.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.02	1.01	1.14	2.01	5.73	6.27	1.99	5.75	3.93	1.0	5.53	5.64
Merged-chr8-84659352-1	chr8	84659252	84659452	+	650.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	3500.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	8.48	9.06	6.28	8.04	7.77	5.96	3.99	3.17	5.7	7.03	3.52	3.45
Merged-chr16-55803774-1	chr16	55803674	55803874	+	650.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18364.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.48	5.28	5.7	3.62	8.18	8.47	4.65	5.1	3.15	3.51	2.01	1.57
Merged-chr2-45039726-1	chr2	45039626	45039826	+	650.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	-16549.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	2.42	2.52	2.85	2.82	2.05	1.57	5.65	4.01	4.33	5.02	1.0	2.82
Merged-chr8-115392573-2	chr8	115392454	115392654	+	650.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	314340.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.86	0.75	7.99	1.61	2.86	3.76	5.98	5.19	7.47	10.04	9.55	5.01
Merged-chr5-130026000-2	chr5	130025906	130026106	+	650.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1625.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	2.83	10.82	12.55	10.05	3.27	6.59	5.98	3.25	7.87	10.04	13.06	4.7
Merged-chr5-115339127-2	chr5	115339022	115339222	+	650.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029645, intron 1 of 2)	B3A|SINE|B2	2039.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	6.46	2.26	7.42	10.46	6.55	7.21	4.65	7.21	9.24	17.07	7.03	8.46
Merged-chr4-59009890-2	chr4	59009792	59009992	+	650.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033165, intron 1 of 3)	PB1D7|SINE|Alu	6699.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	6.46	8.05	8.56	8.04	10.23	6.27	5.31	8.5	5.11	4.02	10.05	6.27
Merged-chr15-100590635-2	chr15	100590566	100590766	+	650.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304965, intron 3 of 10)	RMER6B|LTR|ERVK	-4301.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	7.67	7.29	3.42	7.64	4.09	5.96	7.64	5.38	6.1	3.51	6.03	4.39
Merged-chr19-59037696-2	chr19	59037589	59037789	+	650.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	38380.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	9.29	5.03	10.27	12.47	6.95	3.45	4.65	5.94	10.42	2.51	3.52	7.52
Merged-chr7-79728389-3	chr7	79728302	79728502	+	650.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	4374.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	6.06	5.28	8.56	9.25	10.64	8.15	6.64	7.21	7.87	5.52	8.04	5.33
Merged-chr4-47255818-2	chr4	47255722	47255922	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 6 of 39)	intron (NM_009928, intron 6 of 39)	47810.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.65	4.78	5.7	8.85	3.68	8.78	8.3	7.63	5.51	11.05	14.57	7.83
Merged-chr4-133153814-2	chr4	133153720	133153920	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	23187.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.88	6.79	7.99	4.83	3.27	7.53	4.32	4.26	8.85	10.04	9.55	3.76
Merged-chr2-43868588-1	chr2	43868488	43868688	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 5 of 14)	Lx8b|LINE|L1	119764.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	1.62	3.77	3.42	0.8	3.68	13.17	3.99	5.69	0.0	7.53	2.01	0.63
Merged-chr7-80123879-1	chr7	80123779	80123979	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8529.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.23	4.02	4.56	5.23	7.36	7.53	3.65	5.44	9.64	8.54	5.53	4.39
Merged-chr11-94381516-1	chr11	94381416	94381616	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11460.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	1.01	0.0	0.0	3.27	6.27	3.65	5.55	7.08	1.0	6.53	1.25
Merged-chr6-38145827-1	chr6	38145727	38145927	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194061, intron 15 of 19)	intron (NM_194061, intron 15 of 19)	-21241.0	NM_080467	140494.0	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	10.5	3.02	3.42	4.42	6.95	3.76	2.33	11.21	0.98	2.01	3.01	0.63
Merged-chr2-25181135-1	chr2	25181035	25181235	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025980, exon 1 of 1)	exon (NM_025980, exon 1 of 1)	377.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	13.33	8.55	2.85	10.86	1.64	10.03	9.3	4.21	11.6	9.04	8.54	3.45
Merged-chr15-99484418-1	chr15	99484318	99484518	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9688.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.4	0.5	2.85	0.0	4.09	9.72	5.98	4.91	0.0	1.0	3.52	1.88
Merged-chr11-96294717-1	chr11	96294617	96294817	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131758, intron 1 of 2)	intron (NR_131758, intron 1 of 2)	-4357.0	NM_008269	15414.0	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.81	1.76	2.28	0.0	2.86	6.59	0.66	2.33	6.1	6.03	5.53	1.88
Merged-chr4-132546090-1	chr4	132545990	132546190	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172400, intron 5 of 8)	intron (NM_172400, intron 5 of 8)	10531.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	8.08	5.53	0.0	4.83	3.68	6.9	2.66	4.99	5.51	5.02	3.52	4.39
Merged-chr2-137898647-1	chr2	137898547	137898747	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-357937.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.23	0.0	3.42	1.61	7.36	1.25	7.31	5.97	0.0	0.5	5.02	5.33
Merged-chr19-47841372-2	chr19	47841270	47841470	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-4009.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	5.25	7.55	1.71	6.03	6.55	7.53	0.66	2.86	12.19	4.02	7.03	7.52
Merged-chr1-85882228-1	chr1	85882128	85882328	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-12282.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	4.04	3.52	2.28	2.41	5.73	4.7	1.0	10.23	0.2	0.0	0.0	0.94
Merged-chr18-20750398-1	chr18	20750298	20750498	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-3994.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	2.42	0.75	3.99	4.02	6.14	2.82	13.62	5.41	4.13	6.53	16.08	8.46
Merged-chr2-25167273-1	chr2	25167173	25167373	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13485.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	5.65	4.02	3.99	0.8	5.73	1.25	5.31	5.41	1.97	0.0	2.01	4.07
Merged-chr11-34213089-1	chr11	34212989	34213189	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5000.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	9.29	6.04	0.57	2.41	2.86	7.84	1.99	3.25	3.93	3.51	3.01	4.07
Merged-chr2-168979946-3	chr2	168979850	168980050	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	1681.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	5.65	9.06	1.71	9.25	6.14	7.53	3.32	5.33	10.82	5.02	11.56	11.28
Merged-chr10-26806325-1	chr10	26806225	26806425	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	33813.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.81	0.5	1.14	1.61	3.27	3.14	4.65	5.8	5.7	1.51	3.01	3.45
Merged-chrX-162735158-1	chrX	162735058	162735258	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_153331)	TTS (NR_153331)	1455.0	NR_153331	102640117.0	Mm.183845	NR_153331	ENSMUSG00000086034	Gm15201	-	predicted gene 15201	ncRNA	6.06	3.77	1.71	1.61	4.5	5.64	2.99	5.75	3.74	10.54	7.03	5.33
Merged-chr5-111133316-1	chr5	111133216	111133416	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	129172.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.04	2.52	4.56	6.44	9.41	6.27	1.66	2.16	7.08	10.54	12.06	8.46
Merged-chr2-30985459-2	chr2	30985361	30985561	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3182.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	3.23	7.04	9.13	5.63	7.36	9.41	2.66	5.8	8.85	5.02	3.01	7.52
Merged-chr1-92832383-1	chr1	92832283	92832483	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016696, intron 1 of 8)	CpG	738.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	2.83	2.77	3.42	1.61	3.27	6.27	4.98	6.48	2.36	2.51	4.52	0.94
Merged-chr14-103479630-1	chr14	103479530	103479730	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33711.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.83	3.77	4.56	6.84	4.09	3.14	5.98	7.74	8.46	3.51	12.56	4.39
Merged-chr3-146157613-1	chr3	146157513	146157713	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	7439.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	8.48	6.79	3.99	2.41	7.77	5.64	5.31	4.88	12.78	10.04	6.53	7.21
Merged-chr11-103418255-1	chr11	103418155	103418355	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5591.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.81	0.25	2.28	5.23	4.09	6.9	1.66	5.52	6.49	4.52	3.01	5.33
Merged-chr10-7793291-1	chr10	7793191	7793391	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026141, intron 1 of 12)	intron (NM_026141, intron 1 of 12)	397.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	3.23	12.07	10.84	15.28	2.86	7.84	5.98	4.68	2.95	6.53	13.06	5.64
Merged-chr16-21403652-2	chr16	21403523	21403723	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19495.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.04	4.28	8.56	6.03	5.32	6.59	5.31	5.16	6.29	5.52	12.06	6.58
Merged-chr11-78885124-1	chr11	78885024	78885224	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-35663.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	1.21	5.28	4.56	4.02	11.05	7.84	1.99	1.77	17.51	4.52	4.02	2.82
Merged-chr5-102043937-1	chr5	102043837	102044037	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	25984.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.83	1.51	2.28	4.02	3.68	8.78	1.33	5.58	1.57	3.51	5.02	5.01
Merged-chr19-46876004-3	chr19	46875902	46876102	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033569, intron 6 of 7)	intron (NM_033569, intron 6 of 7)	86349.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	8.48	5.03	9.13	4.83	7.77	9.09	5.31	6.81	9.05	9.04	7.54	5.33
Merged-chr14-118234948-1	chr14	118234848	118235048	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177753, exon 1 of 1)	exon (NM_177753, exon 1 of 1)	-1284.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	3.63	4.28	0.0	3.22	3.27	5.02	7.31	1.99	3.34	1.0	2.51	4.07
Merged-chr5-64722340-2	chr5	64722236	64722436	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-81187.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	1.62	2.26	9.13	4.02	3.68	8.47	2.66	7.01	7.67	7.53	3.52	6.89
Merged-chr2-166046439-1	chr2	166046339	166046539	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	53802.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.27	6.29	3.99	6.03	10.23	5.64	6.64	1.07	8.46	10.54	5.02	7.83
Merged-chr7-98771362-1	chr7	98771262	98771462	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63750.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.42	4.28	3.42	6.03	4.09	1.57	0.66	4.46	7.47	8.03	12.56	7.52
Merged-chr4-94979591-1	chr4	94979491	94979691	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-491.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	7.27	8.05	3.42	2.41	6.95	9.72	5.98	5.38	7.08	10.54	10.05	5.95
Merged-chr7-44836486-1	chr7	44836386	44836586	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010215, intron 1 of 7)	intron (NM_010215, intron 1 of 7)	198.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.25	7.29	2.85	1.21	6.95	5.64	6.31	4.35	7.67	4.02	5.02	6.58
Merged-chr5-121477866-1	chr5	121477766	121477966	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161626, intron 4 of 9)	intron (NM_001161626, intron 4 of 9)	14685.0	NM_001161627	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	9.29	9.81	4.56	6.44	7.36	8.78	0.0	6.39	16.72	6.53	9.04	4.7
Merged-chr6-72103509-1	chr6	72103409	72103609	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	5901.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.25	3.52	9.13	2.82	8.18	0.94	1.33	6.76	4.52	2.51	5.02	5.01
Merged-chrX-107817394-1	chrX	107817294	107817494	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163104, intron 1 of 5)	intron (NM_001163104, intron 1 of 5)	917.0	NM_001163104	213449.0	Mm.444635	NM_001163104	ENSMUSG00000073007	Fam46d	Gm377	family with sequence similarity 46, member D	protein-coding	4.44	4.53	6.85	0.0	12.27	9.09	3.99	7.96	9.05	7.03	12.06	6.89
Merged-chr17-36273928-1	chr17	36273828	36274028	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1924.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	10.09	8.05	11.41	4.42	3.27	6.27	5.31	2.36	2.95	3.51	5.02	3.13
Merged-chr3-84064673-2	chr3	84064594	84064794	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24533.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	5.25	3.77	2.85	0.8	2.05	7.53	5.98	10.21	5.7	3.01	8.54	3.76
Merged-chr5-23872924-1	chr5	23872824	23873024	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	20691.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	3.23	1.01	3.42	1.21	1.23	3.45	5.98	5.21	2.16	7.03	7.03	2.51
Merged-chr11-118244012-1	chr11	118243912	118244112	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4580.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.83	1.51	5.13	5.63	2.05	5.64	6.64	5.94	4.13	1.51	12.06	5.01
Merged-chr5-77229188-3	chr5	77229085	77229285	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17714.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	7.67	7.8	3.42	3.22	10.64	8.15	7.64	5.94	17.51	4.02	12.06	8.46
Merged-chr15-99471205-1	chr15	99471105	99471305	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	3525.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.85	1.76	3.42	0.8	4.09	7.21	1.99	5.66	6.29	8.03	5.02	5.01
Merged-chr3-107160199-1	chr3	107160099	107160299	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22944.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	6.46	8.8	11.98	9.25	4.09	3.14	1.99	2.72	5.11	3.01	11.05	4.07
Merged-chr12-111567773-1	chr12	111567673	111567873	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6629.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	3.23	6.79	1.14	8.04	2.05	0.63	2.33	3.34	10.03	5.52	10.05	4.7
Merged-chr2-27757734-1	chr2	27757634	27757834	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	47151.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.02	0.5	2.28	6.03	5.73	6.27	4.32	3.7	3.15	4.02	6.53	5.64
Merged-chr4-59058150-1	chr4	59058050	59058250	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22994.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.0	1.51	1.71	1.21	6.95	2.51	7.97	6.31	3.15	4.52	6.03	4.39
Merged-chr9-97116165-1	chr9	97116065	97116265	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5124.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	1.62	2.01	4.56	1.61	3.27	3.14	1.99	1.04	9.05	6.03	10.05	1.57
Merged-chr7-143605509-2	chr7	143605406	143605606	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5416.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	6.86	7.04	5.13	7.64	9.0	1.25	1.99	6.42	10.23	8.03	3.52	4.7
Merged-chr2-117936761-2	chr2	117936640	117936840	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114812.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.46	4.53	9.7	12.87	3.68	6.9	6.98	5.89	3.54	3.01	1.0	4.07
Merged-chr11-74995100-2	chr11	74995001	74995201	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	69229.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.86	3.52	6.28	7.24	4.91	2.82	2.33	5.69	10.03	7.53	14.07	5.64
Merged-chr9-51103477-1	chr9	51103377	51103577	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029654)	promoter-TSS (NR_029654)	168.0	NR_029655	723849.0		NR_029655	ENSMUSG00000065492	Mir34b	Mirn34b|mir-34b|mmu-mir-34b	microRNA 34b	ncRNA	2.02	5.53	2.28	3.22	2.86	6.9	1.66	6.39	6.1	4.02	7.54	6.27
Merged-chr14-32509757-1	chr14	32509657	32509857	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3764.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	2.42	2.77	0.0	3.22	1.23	7.53	1.66	6.67	2.75	6.03	1.0	6.58
Merged-chr6-45026470-1	chr6	45026370	45026570	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33591.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	1.76	5.13	1.61	2.86	4.08	2.33	4.18	1.77	6.53	4.52	4.39
Merged-chr9-3024407-4	chr9	3024259	3024459	+	649.958313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	14384.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	8.88	8.05	13.12	8.45	19.23	4.7	9.97	0.0	12.78	7.03	9.55	8.14
Merged-chr15-57705182-4	chr15	57705072	57705272	+	649.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	10505.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	1.62	4.53	3.99	1.21	4.91	7.84	9.63	4.88	3.74	10.54	6.03	3.13
Merged-chr17-35059051-3	chr17	35058945	35059145	+	649.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190449)	promoter-TSS (NM_001190449)	10.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	4.44	8.3	7.99	2.41	10.64	15.05	3.32	5.47	11.6	11.55	9.55	7.83
Merged-chr11-3335983-2	chr11	3335886	3336086	+	649.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178149, intron 5 of 5)	intron (NM_178149, intron 5 of 5)	5255.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	7.67	7.29	4.56	4.42	11.05	8.15	0.66	7.04	9.05	3.01	4.52	2.19
Merged-chr4-133519292-3	chr4	133519194	133519394	+	649.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083916, intron 1 of 3)	CpG	331.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	9.29	4.28	11.98	11.26	13.5	8.78	9.63	3.39	9.05	17.07	10.55	13.16
Merged-chr10-127263165-3	chr10	127263087	127263287	+	649.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008447, exon 1 of 28)	5' UTR (NM_008447, exon 1 of 28)	176.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	1.21	8.3	4.56	10.05	9.82	5.64	6.98	7.07	8.06	7.03	8.04	6.58
Merged-chr8-94199678-3	chr8	94199570	94199770	+	649.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14894.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	7.27	9.56	1.71	6.44	4.09	5.96	7.64	6.7	13.96	12.55	8.04	5.33
Merged-chr6-124683869-3	chr6	124683827	124684027	+	649.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	20823.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	10.09	6.54	2.85	4.42	6.14	8.47	3.32	1.01	8.46	13.56	11.56	8.14
Merged-chr8-121927523-3	chr8	121927425	121927625	+	649.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	17387.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	13.73	4.78	8.56	10.46	7.36	8.78	6.98	7.15	11.21	6.03	10.55	7.52
Merged-chr18-61124823-2	chr18	61124745	61124945	+	649.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001037859, exon 14 of 22)	exon (NM_001037859, exon 14 of 22)	7377.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	3.23	3.52	3.99	3.22	3.68	3.14	3.32	5.5	9.05	14.06	13.06	7.52
Merged-chr1-55874341-3	chr1	55874260	55874460	+	649.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56881.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	12.11	4.78	7.99	2.41	3.27	2.51	3.99	4.91	5.7	17.07	3.01	8.14
Merged-chrX-99595669-3	chrX	99595566	99595766	+	649.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124931.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	4.04	5.28	6.28	5.23	1.64	7.21	3.99	4.09	7.87	5.52	13.57	3.76
Merged-chr16-16555929-1	chr16	16555829	16556029	+	649.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	B1F|SINE|Alu	4290.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	2.83	2.77	3.99	1.61	7.77	5.33	5.65	5.52	5.31	4.52	5.02	3.45
Merged-chr19-24953813-2	chr19	24953705	24953905	+	649.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146097, intron 3 of 14)	intron (NM_146097, intron 3 of 14)	7811.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	9.29	8.05	13.69	10.86	0.0	0.0	0.0	0.31	9.24	5.02	4.52	9.08
Merged-chr14-70604689-3	chr14	70604585	70604785	+	649.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001252663, exon 14 of 14)	3' UTR (NM_001252663, exon 14 of 14)	-4850.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	6.46	11.57	4.56	8.45	5.32	5.64	15.94	7.99	5.51	7.03	9.55	11.9
Merged-chr4-141834716-3	chr4	141834665	141834865	+	649.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8760.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	5.25	5.03	10.27	8.04	8.18	5.02	5.31	10.07	16.33	7.53	10.55	11.59
Merged-chr4-122897124-1	chr4	122897024	122897224	+	649.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11048.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.0	1.76	0.57	1.61	1.23	0.0	7.97	0.59	7.08	15.06	13.57	5.95
Merged-chrX-142426771-1	chrX	142426671	142426871	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36236.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	5.25	6.54	2.28	3.22	7.36	5.64	9.63	6.0	9.83	4.02	3.01	5.33
Merged-chr6-52486842-2	chr6	52486741	52486941	+	649.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-5610.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.44	6.79	5.13	9.25	5.32	6.27	3.65	10.18	6.49	5.02	4.52	3.76
Merged-chr5-124085019-2	chr5	124084927	124085127	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	10771.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	12.92	4.78	6.85	4.83	6.55	9.41	3.32	5.02	8.65	16.07	17.59	7.21
Merged-chr13-23412558-1	chr13	23412458	23412658	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11308.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	1.62	3.27	2.85	7.24	5.32	4.7	1.33	5.41	2.95	2.51	4.02	4.7
Merged-chr13-112308870-2	chr13	112308809	112309009	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	20391.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	8.48	3.77	4.56	1.21	5.32	3.76	6.98	6.53	6.1	5.02	12.06	2.19
Merged-chr15-89182458-1	chr15	89182358	89182558	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027081, exon 20 of 20)	3' UTR (NM_027081, exon 20 of 20)	-1670.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.25	4.53	3.42	1.21	8.59	3.45	4.32	6.08	6.69	6.53	8.04	6.27
Merged-chr2-167680756-2	chr2	167680621	167680821	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8194.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	6.46	5.28	0.0	0.8	2.45	4.08	4.98	4.96	8.26	8.54	1.51	6.89
Merged-chr16-17891178-2	chr16	17891078	17891278	+	649.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109750, intron 1 of 9)	CpG	550.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	4.85	9.06	9.13	8.85	10.64	6.59	13.29	7.51	7.87	8.54	22.11	12.84
Merged-chrX-73918216-2	chrX	73918125	73918325	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019870, intron 6 of 7)	intron (NM_019870, intron 6 of 7)	3719.0	NM_001310538	56292.0	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	6.46	2.52	10.27	3.22	3.68	3.45	4.32	6.93	9.83	7.53	10.05	3.13
Merged-chr2-52606169-3	chr2	52606060	52606260	+	649.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	L2a|LINE|L2	-47549.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	10.5	5.28	2.28	8.04	6.14	3.45	4.65	8.92	9.44	1.0	10.05	8.14
Merged-chr9-114748537-2	chr9	114748412	114748612	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	17309.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	1.26	2.85	2.01	8.18	3.14	2.66	3.62	2.75	11.55	8.04	6.89
Merged-chr11-49983034-3	chr11	49982927	49983127	+	649.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-42304.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.85	6.54	8.56	6.03	4.91	5.64	1.66	3.53	12.19	18.08	6.03	6.89
Merged-chr9-32502623-2	chr9	32502512	32502712	+	649.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	38840.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	8.48	7.04	1.14	8.85	6.55	5.64	3.32	7.71	7.87	4.52	3.01	4.7
Merged-chr8-123849542-2	chr8	123849436	123849636	+	649.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028536, intron 2 of 3)	RLTR17|LTR|ERVK	10673.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	8.08	7.29	13.12	6.44	10.64	14.42	10.3	4.37	0.39	0.0	0.0	0.31
Merged-chr11-101067194-3	chr11	101067024	101067224	+	649.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2970.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	7.27	6.54	3.42	2.01	3.27	4.7	6.31	3.7	7.87	7.03	6.03	7.52
Merged-chr5-122536124-2	chr5	122536026	122536226	+	649.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33901.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	9.69	8.55	10.27	6.44	13.5	6.59	6.64	6.67	8.85	3.51	7.03	1.88
Merged-chr11-20247180-2	chr11	20247111	20247311	+	649.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	2213.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	4.44	10.31	9.13	4.02	14.32	9.09	4.98	4.93	1.57	1.0	1.0	2.82
Merged-chr16-35022921-2	chr16	35022823	35023023	+	649.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023587, intron 1 of 6)	CpG	502.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	12.52	7.8	4.56	8.45	9.0	17.87	6.98	8.16	10.23	14.06	13.06	4.39
Merged-chr17-83278406-3	chr17	83278290	83278490	+	649.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63107.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	11.31	4.28	10.84	4.42	2.45	5.96	3.65	5.58	11.41	5.52	6.03	10.65
Merged-chr2-30679778-3	chr2	30679698	30679898	+	649.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1787.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	7.27	4.53	15.97	10.86	8.18	4.39	4.32	13.32	9.64	7.53	5.53	3.76
Merged-chr17-70873481-1	chr17	70873381	70873581	+	649.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12881.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0.81	1.51	0.0	0.0	0.0	1.25	0.0	1.07	8.46	12.55	16.58	9.71
Merged-chr10-58498742-2	chr10	58498642	58498842	+	649.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 1 of 15)	intron (NM_001162956, intron 1 of 15)	805.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	2.83	3.02	2.28	2.01	2.45	9.41	1.33	5.58	11.01	9.04	8.54	8.46
Merged-chr19-42139985-1	chr19	42139885	42140085	+	649.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7404.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	9.69	2.77	9.13	3.22	7.36	10.03	4.98	5.27	5.9	5.02	1.0	3.13
Merged-chr19-45032017-1	chr19	45031917	45032117	+	649.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13755.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	4.04	4.02	8.56	5.63	7.77	7.84	5.31	5.89	8.65	4.02	5.02	6.58
Merged-chr5-141094389-3	chr5	141094271	141094471	+	649.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93775.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	9.29	10.82	9.13	10.46	6.14	4.7	2.66	5.83	8.65	9.54	12.56	4.07
Merged-chr4-129455530-3	chr4	129455452	129455652	+	649.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6127.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	11.71	6.54	6.28	8.04	6.55	7.84	3.32	6.2	8.85	8.03	13.57	5.01
Merged-chr7-79997308-3	chr7	79997202	79997402	+	649.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27512.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.86	9.56	13.69	4.83	12.27	7.21	4.32	5.92	8.46	12.05	4.52	10.02
Merged-chr9-63500118-2	chr9	63500013	63500213	+	649.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030068, intron 14 of 21)	intron (NM_030068, intron 14 of 21)	-100869.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	6.86	14.09	9.13	14.88	3.68	13.17	5.65	4.23	13.37	10.04	8.54	2.82
Merged-chr11-97083087-2	chr11	97082998	97083198	+	649.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19330.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	11.31	7.29	7.99	4.83	6.55	13.48	3.65	5.3	18.29	8.54	3.01	3.76
Merged-chr4-41359556-3	chr4	41359450	41359650	+	649.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	B1F2|SINE|Alu	7587.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	11.31	5.03	7.99	6.03	10.23	7.84	7.64	8.21	10.62	10.04	9.55	4.39
Merged-chr2-24572153-3	chr2	24572044	24572244	+	649.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96545.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	6.86	3.52	15.4	8.85	7.77	8.78	12.29	18.9	8.26	5.02	9.55	8.46
Merged-chr7-45709405-1	chr7	45709305	45709505	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_203280)	TTS (NM_203280)	4158.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	1.62	1.01	3.42	2.01	0.82	1.57	1.33	1.63	3.15	0.0	1.51	5.33
Merged-chr18-39085851-1	chr18	39085751	39085951	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	92706.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.85	2.01	4.56	4.02	5.32	4.39	5.98	6.73	0.39	0.0	0.0	1.88
Merged-chr13-109922410-2	chr13	109922310	109922510	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	18601.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	6.46	6.29	5.13	1.61	6.95	5.02	6.64	8.41	4.33	5.02	10.55	3.76
Merged-chr11-69100483-1	chr11	69100383	69100583	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159367, intron 1 of 22)	intron (NM_001159367, intron 1 of 22)	331.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.88	4.78	13.12	10.46	5.32	4.7	2.99	4.79	4.33	3.01	8.04	5.01
Merged-chr9-108005350-1	chr9	108005250	108005450	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	2702.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	5.65	4.78	7.99	4.02	3.68	6.27	4.98	6.62	4.92	10.04	10.05	5.95
Merged-chr2-116976481-1	chr2	116976381	116976581	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	76329.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	13.73	10.06	7.42	8.85	9.0	12.54	5.65	6.73	8.85	17.57	15.07	7.52
Merged-chr8-68362048-1	chr8	68361948	68362148	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172753, intron 9 of 9)	intron (NM_172753, intron 9 of 9)	-6411.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.4	0.75	1.14	2.01	4.91	2.2	3.65	6.93	2.75	2.01	4.02	4.7
Merged-chr5-121330535-1	chr5	121330435	121330635	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 49 of 75)	IAPLTR2a|LTR|ERVK	54874.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.81	0.5	0.0	0.0	0.0	0.0	0.0	0.0	6.29	5.52	8.04	7.52
Merged-chr11-107446820-1	chr11	107446720	107446920	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	23900.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	2.42	0.5	1.14	2.01	4.91	1.57	8.3	5.33	3.93	0.0	6.03	6.27
Merged-chr4-155821215-2	chr4	155821104	155821304	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207678, intron 8 of 10)	B2_Mm1a|SINE|B2	8715.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	12.11	6.04	3.42	8.45	3.68	6.27	1.66	0.98	10.62	7.03	11.05	4.07
Merged-chr4-97758113-3	chr4	97758033	97758233	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19493.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.63	8.3	6.28	8.85	4.5	3.76	8.3	4.23	5.11	15.06	7.54	6.89
Merged-chrX-99136849-1	chrX	99136749	99136949	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010110, exon 1 of 5)	5' UTR (NM_010110, exon 1 of 5)	788.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	5.25	5.03	6.28	4.02	6.14	2.51	6.64	4.88	8.26	6.03	4.52	2.19
Merged-chr5-146823988-1	chr5	146823888	146824088	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8902.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	4.44	4.78	0.57	3.22	3.68	5.02	1.66	1.21	12.0	6.03	9.55	7.83
Merged-chr13-41574006-1	chr13	41573906	41574106	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32210.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	1.01	2.28	4.02	1.64	0.63	5.31	5.41	4.92	1.51	3.52	2.82
Merged-chr9-102616415-1	chr9	102616315	102616515	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081122, intron 5 of 16)	intron (NM_001081122, intron 5 of 16)	9709.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.4	5.28	2.85	7.64	2.45	3.14	3.32	3.7	7.08	6.53	9.55	10.65
Merged-chr3-129430663-1	chr3	129430563	129430763	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3010.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.81	1.76	5.7	2.41	6.55	4.08	3.32	5.94	4.52	6.53	7.03	8.77
Merged-chr13-9424079-1	chr13	9423979	9424179	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	147554.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.46	1.76	1.14	2.41	5.73	5.96	0.0	7.57	9.44	1.0	7.54	2.19
Merged-chr11-70456856-1	chr11	70456756	70456956	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151497, intron 3 of 5)	intron (NR_151497, intron 3 of 5)	-2577.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	5.65	7.29	2.28	5.23	11.45	7.84	6.31	3.84	9.05	9.04	9.55	5.33
Merged-chr6-108527656-1	chr6	108527556	108527756	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	37913.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.81	1.01	0.0	2.41	5.73	1.57	5.31	5.47	2.95	1.0	1.51	2.19
Merged-chr7-38106944-1	chr7	38106844	38107044	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007633, intron 1 of 11)	intron (NM_007633, intron 1 of 11)	546.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	6.06	8.55	3.42	3.62	2.86	6.27	4.98	4.32	11.01	10.04	13.57	6.89
Merged-chr17-15709839-1	chr17	15709739	15709939	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007690, intron 2 of 35)	Lx7|LINE|L1	4872.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	11.31	3.77	6.85	4.83	6.55	4.39	3.32	6.36	5.31	1.0	7.54	4.7
Merged-chr1-66861959-1	chr1	66861859	66862059	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	intron (NM_007381, intron 1 of 10)	1350.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.81	4.28	2.85	2.01	4.91	5.33	1.66	7.15	5.31	5.02	4.02	2.51
Merged-chr4-131825977-1	chr4	131825877	131826077	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	12301.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	7.27	4.02	4.56	4.83	4.09	12.54	6.31	5.89	12.78	8.54	4.52	5.33
Merged-chr18-5133238-1	chr18	5133138	5133338	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32493.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	5.65	0.75	2.28	0.8	9.82	5.02	4.65	6.17	5.51	6.03	3.52	5.01
Merged-chr10-25433746-2	chr10	25433639	25433839	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	25371.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.25	8.8	4.56	8.04	5.73	9.41	2.66	6.06	3.15	6.03	1.51	1.57
Merged-chr15-64342639-1	chr15	64342539	64342739	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 2 of 28)	intron (NM_001276461, intron 2 of 28)	-29966.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.5	0.0	0.0	5.32	7.84	2.99	6.34	4.33	4.02	12.06	5.01
Merged-chr12-35800784-1	chr12	35800684	35800884	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-105666.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	4.04	3.27	5.7	4.42	3.68	5.33	11.96	5.44	5.11	5.02	4.02	4.7
Merged-chr10-117111735-1	chr10	117111635	117111835	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	MLT1N2|LTR|ERVL-MaLR	36739.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.04	1.01	0.0	4.42	7.36	3.45	3.65	12.76	4.33	2.01	1.51	0.63
Merged-chr5-38092073-1	chr5	38091973	38092173	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	52843.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.83	3.02	0.0	6.03	0.82	1.25	4.32	5.24	0.39	0.5	1.0	1.57
Merged-chr5-16947691-1	chr5	16947591	16947791	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	393790.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	2.83	8.8	4.56	10.46	1.64	0.0	2.99	6.62	5.11	3.51	5.53	4.07
Merged-chr2-91136753-1	chr2	91136653	91136853	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177720)	TTS (NM_001177720)	18609.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.4	3.52	3.42	2.01	6.55	5.02	2.99	1.93	6.29	5.52	5.02	4.39
Merged-chr17-43033190-1	chr17	43033090	43033290	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16635.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.67	5.53	7.42	5.63	1.64	2.2	1.66	3.11	5.9	4.02	5.02	2.51
Merged-chr12-100528478-1	chr12	100528378	100528578	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7656.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.81	0.5	1.14	0.0	3.27	6.59	3.99	5.86	2.36	1.51	3.01	0.94
Merged-chr15-81011460-2	chr15	81011378	81011578	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153049)	TTS (NM_153049)	33713.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.25	2.28	0.8	4.09	2.51	10.3	1.21	4.33	14.06	4.52	3.76
Merged-chr9-90259524-1	chr9	90259424	90259624	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	11245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.44	1.51	3.42	0.8	12.27	3.14	5.31	1.54	1.77	1.0	1.51	4.7
Merged-chr9-110653160-1	chr9	110653060	110653260	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1001.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	3.23	4.28	3.99	3.62	4.09	4.39	4.65	3.2	6.88	2.01	2.51	5.64
Merged-chr7-104408518-2	chr7	104408424	104408624	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009099)	TTS (NM_009099)	37601.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	4.04	4.02	4.56	3.62	1.64	9.41	1.99	3.64	8.85	2.01	20.6	4.39
Merged-chr4-102493500-1	chr4	102493400	102493600	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-76560.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.06	2.52	3.42	2.41	2.86	1.88	3.65	4.65	10.23	6.03	3.01	4.7
Merged-chr15-90420880-1	chr15	90420780	90420980	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	67170.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	6.06	5.03	9.13	0.8	2.45	6.9	4.32	6.25	3.74	6.53	4.02	3.45
Merged-chr13-37997631-1	chr13	37997531	37997731	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3423.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.83	1.51	1.14	0.0	2.86	0.63	2.33	5.36	1.18	2.51	2.01	3.13
Merged-chr3-147064560-1	chr3	147064460	147064660	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212193.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	2.83	1.51	2.28	4.42	4.91	4.7	2.66	5.64	1.77	5.02	5.53	0.63
Merged-chr3-21959073-2	chr3	21958971	21959171	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117581.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.46	2.01	13.12	3.22	7.36	10.35	6.64	5.8	12.0	7.53	8.04	7.83
Merged-chr12-55446823-1	chr12	55446723	55446923	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45824.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	9.69	4.53	5.7	0.0	11.86	4.08	9.63	5.38	6.69	7.53	10.55	2.19
Merged-chr5-122950994-2	chr5	122950796	122950996	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	38203.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.44	2.52	2.85	2.82	1.64	2.51	2.66	1.71	2.16	1.51	4.02	2.19
Merged-chr6-110080957-2	chr6	110080847	110081047	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-564565.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	8.88	3.02	2.28	3.62	6.14	5.96	5.31	16.07	9.64	8.03	12.56	3.76
Merged-chr2-33962902-1	chr2	33962802	33963002	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74956.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.25	1.14	2.41	4.91	6.27	3.65	8.1	3.54	2.51	4.02	9.4
Merged-chr12-99874850-2	chr12	99874751	99874951	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	8591.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	2.83	2.01	9.7	7.24	7.77	2.51	4.98	9.22	4.92	6.53	4.52	5.01
Merged-chr9-96720752-1	chr9	96720652	96720852	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359959)	promoter-TSS (NM_001359959)	-902.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.81	3.52	2.28	2.41	4.91	2.2	7.31	4.91	4.52	5.52	4.52	4.39
Merged-chr17-56751639-1	chr17	56751539	56751739	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008738, exon 3 of 3)	exon (NM_008738, exon 3 of 3)	5909.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	2.02	1.51	0.0	1.61	5.73	3.45	1.66	3.64	10.62	5.02	10.55	4.39
Merged-chr13-58188645-2	chr13	58188549	58188749	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026842, intron 6 of 10)	MTE-int|LTR|ERVL-MaLR	27004.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	4.85	3.02	3.99	8.04	8.59	10.35	2.66	5.47	12.39	7.03	13.06	5.64
Merged-chr7-123242474-2	chr7	123242376	123242576	+	648.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146198, intron 6 of 16)	intron (NM_146198, intron 6 of 16)	27610.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	1.62	2.26	6.85	6.44	8.18	13.8	5.65	6.53	8.85	5.52	8.54	6.27
Merged-chr15-76625611-2	chr15	76625480	76625680	+	648.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183091)	TTS (NM_183091)	504.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	4.44	3.77	3.99	1.61	6.95	4.39	2.99	3.17	8.85	11.05	18.59	9.08
Merged-chr7-80035287-2	chr7	80035185	80035385	+	648.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	9057.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.06	8.3	5.7	10.05	4.91	4.39	6.64	7.85	6.69	5.02	8.04	2.82
Merged-chrX-135753009-2	chrX	135752900	135753100	+	648.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005385, intron 5 of 9)	RLTR14|LTR|ERV1	6284.0	NR_106104	102465755.0		NR_106104	ENSMUSG00000106264	Mir7646	mmu-mir-7646	microRNA 7646	ncRNA	9.29	12.83	11.98	10.05	7.36	7.84	3.99	9.79	6.88	7.53	3.01	6.58
Merged-chr4-133744802-2	chr4	133744702	133744902	+	648.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	8809.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.25	7.04	14.83	18.1	5.73	7.21	5.31	4.99	6.1	5.52	2.01	1.88
Merged-chr11-62603753-1	chr11	62603653	62603853	+	648.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028541)	promoter-TSS (NR_028541)	293.0	NR_028550	100217455.0		NR_028550	ENSMUSG00000065734	Snord49a	MBII-243	small nucleolar RNA, C/D box 49A	snoRNA	7.27	11.07	2.28	2.41	2.05	5.33	2.99	2.3	8.65	12.55	11.05	8.46
Merged-chr18-57563097-3	chr18	57563060	57563260	+	648.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 2 of 6)	intron (NM_029290, intron 2 of 6)	-10763.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.04	5.53	1.14	3.22	6.55	5.02	6.31	7.65	7.87	1.51	6.03	3.13
Merged-chr10-44219256-3	chr10	44219161	44219361	+	648.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001582, exon 7 of 7)	non-coding (NR_001582, exon 7 of 7)	3836.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	6.06	7.55	10.84	3.22	6.95	13.17	4.65	5.86	10.03	5.02	11.05	6.89
Merged-chr8-19561428-1	chr8	19561328	19561528	+	648.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66331.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.4	1.01	2.28	0.8	5.73	8.15	7.31	5.1	3.15	4.52	2.51	0.63
Merged-chr19-55887973-2	chr19	55887868	55888068	+	648.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-7353.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.88	4.02	7.99	5.63	4.91	4.7	5.65	9.81	10.62	9.04	8.04	4.7
Merged-chr19-11659337-1	chr19	11659237	11659437	+	648.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037634, intron 1 of 3)	intron (NM_001037634, intron 1 of 3)	1222.0	NM_001037634	225922.0	Mm.26881	NM_001037634	ENSMUSG00000055895	Oosp2	Gm99|Plac1l|Tmem122	oocyte secreted protein 2	protein-coding	2.83	2.01	13.69	6.03	12.27	6.59	9.63	5.55	5.11	1.51	8.04	5.33
Merged-chr6-48746131-1	chr6	48746031	48746231	+	648.75	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_175035)	promoter-TSS (NM_175035)	-66.0	NM_175035	317757.0	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	14.94	6.04	9.13	15.69	1.64	1.25	0.33	1.74	3.54	1.0	3.52	3.13
Merged-chr16-84879282-1	chr16	84879182	84879382	+	648.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43657.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	6.46	2.52	0.0	2.01	0.82	15.37	7.31	5.61	3.15	3.51	2.01	1.88
Merged-chr6-135377974-1	chr6	135377874	135378074	+	648.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001288627, intron 2 of 4)	intron (NM_001288627, intron 2 of 4)	10481.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	1.21	5.79	7.42	3.62	4.91	7.84	7.31	6.03	5.9	8.03	7.54	3.76
Merged-chr16-32795378-3	chr16	32795271	32795471	+	648.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145874, intron 1 of 3)	intron (NM_001145874, intron 1 of 3)	2064.0	NM_146071	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	5.25	7.55	10.27	4.83	6.55	7.21	3.99	7.26	12.0	10.54	7.54	4.07
Merged-chr7-135631958-3	chr7	135631876	135632076	+	648.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-19923.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	11.71	4.02	6.28	3.62	4.5	10.03	1.66	7.96	9.83	4.52	5.53	13.16
Merged-chr5-3224039-1	chr5	3223939	3224139	+	648.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119854.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.67	1.76	2.85	2.82	10.23	9.41	4.32	5.72	8.65	7.03	7.54	5.64
Merged-chr14-118922926-2	chr14	118922831	118923031	+	648.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360413)	promoter-TSS (NM_001360413)	-140.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	2.83	4.53	8.56	9.25	4.09	2.82	8.97	4.51	4.13	5.02	6.03	5.01
Merged-chr4-62600719-2	chr4	62600620	62600820	+	648.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	-18952.0	NM_001081650	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	10.9	9.81	18.83	9.65	2.86	3.45	5.98	8.86	6.29	8.54	9.55	3.76
Merged-chr7-96977888-2	chr7	96977802	96978002	+	648.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	26375.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.23	6.04	7.99	0.4	7.36	9.72	5.98	6.17	12.59	2.51	6.53	8.14
Merged-chr6-124768707-2	chr6	124768610	124768810	+	648.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013509, intron 1 of 11)	intron (NM_013509, intron 1 of 11)	963.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	6.86	10.56	8.56	5.63	7.77	12.86	6.31	4.96	5.51	16.07	10.05	3.13
Merged-chr6-113099803-1	chr6	113099703	113099903	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	-5132.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	2.42	0.25	10.27	7.24	4.91	7.53	0.66	3.95	4.92	4.02	8.54	5.95
Merged-chr1-64198517-2	chr1	64198415	64198615	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77126.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.86	3.02	10.27	3.22	4.09	6.59	5.65	6.11	11.8	2.51	6.53	6.89
Merged-chr14-69854101-2	chr14	69854006	69854206	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	13699.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	8.88	6.29	3.42	1.61	5.73	10.98	1.99	5.5	8.85	5.02	5.53	5.64
Merged-chr1-131046791-1	chr1	131046691	131046891	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26946.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.44	5.28	2.28	4.02	1.64	3.76	7.97	6.08	9.64	9.04	2.01	5.95
Merged-chr7-80830099-1	chr7	80829999	80830199	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26768.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.06	4.78	3.99	8.45	13.09	5.33	1.33	6.87	0.98	3.01	1.0	1.57
Merged-chr14-52195838-1	chr14	52195738	52195938	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	1401.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	3.23	7.8	2.28	0.8	6.95	6.59	2.33	6.34	10.82	9.04	6.03	3.45
Merged-chr10-8771028-1	chr10	8770928	8771128	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	115042.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.65	5.53	1.14	4.02	9.82	8.47	5.65	4.65	10.03	5.02	1.0	2.82
Merged-chr2-170330783-1	chr2	170330683	170330883	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25578.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.63	3.52	11.41	5.63	6.14	7.84	2.33	4.57	4.72	4.52	2.51	4.7
Merged-chr3-95629986-1	chr3	95629886	95630086	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001026212, exon 3 of 3)	3' UTR (NM_001026212, exon 3 of 3)	5006.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	2.42	3.27	1.14	1.61	8.18	3.45	6.98	7.09	8.26	6.03	6.03	12.53
Merged-chr17-56951035-1	chr17	56950935	56951135	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15647.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	8.88	1.76	3.42	2.82	6.55	13.48	0.66	5.27	5.7	6.03	5.53	2.51
Merged-chr8-117281953-2	chr8	117281854	117282054	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	24935.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.02	2.77	3.42	5.63	11.05	3.76	6.31	4.29	5.11	2.51	13.06	8.46
Merged-chr17-6982540-2	chr17	6982422	6982622	+	648.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026611, intron 2 of 8).2	intron (NM_026611, intron 2 of 8).2	3662.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	10.09	7.29	1.14	9.65	2.45	9.09	3.99	1.35	15.93	6.53	11.05	10.65
Merged-chr3-52199170-1	chr3	52199070	52199270	+	648.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69167.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	1.62	5.53	1.71	3.62	3.27	2.51	4.65	3.59	5.9	11.55	5.02	8.77
Merged-chrX-166241029-2	chrX	166240926	166241126	+	648.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	2083.0	NM_001177962	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	1.62	2.52	9.13	13.67	9.41	4.08	5.31	8.47	8.06	3.51	11.05	2.82
Merged-chr9-44094286-2	chr9	44094176	44094376	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-7494.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	6.06	2.52	4.56	5.23	3.68	7.21	3.99	6.11	4.92	9.54	5.02	8.14
Merged-chr2-34639439-2	chr2	34639330	34639530	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115802.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	2.42	2.26	1.71	4.83	9.41	7.84	2.99	5.38	7.28	5.52	13.06	1.57
Merged-chr13-55249418-2	chr13	55249318	55249518	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 5 of 22)	intron (NM_008739, intron 5 of 22)	39636.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	2.42	4.02	11.41	3.62	5.73	3.14	3.99	7.79	11.21	5.02	8.54	10.65
Merged-chr14-75121845-1	chr14	75121745	75121945	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027581, intron 5 of 9)	intron (NM_027581, intron 5 of 9)	9038.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	2.02	1.26	10.84	7.24	8.59	6.27	3.32	9.53	8.06	4.02	12.56	3.76
Merged-chr18-35747099-3	chr18	35746965	35747165	+	648.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6511.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	7.67	6.04	1.71	5.23	4.91	10.98	7.97	5.02	3.34	13.05	9.04	5.64
Merged-chr1-62707126-2	chr1	62707064	62707264	+	648.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	3847.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.46	8.8	11.41	6.03	5.32	12.54	6.98	4.79	7.67	3.51	4.02	3.13
Merged-chr18-56821304-2	chr18	56821198	56821398	+	648.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	104250.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	13.33	8.05	7.42	15.69	6.14	3.76	3.32	7.88	3.93	3.01	2.51	2.51
Merged-chr5-134551476-3	chr5	134551310	134551510	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	1024.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	7.67	10.56	2.85	6.44	1.23	0.94	3.99	5.55	6.29	2.51	2.01	4.07
Merged-chr10-40087861-3	chr10	40087778	40087978	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	L1MC3|LINE|L1	54376.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	8.88	3.52	6.85	1.61	5.73	4.39	6.64	5.86	10.23	7.53	14.57	9.08
Merged-chr8-94486187-1	chr8	94486087	94486287	+	648.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033207, intron 11 of 48)	intron (NM_001033207, intron 11 of 48)	13424.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	1.62	3.77	5.7	3.22	7.77	9.09	2.33	1.63	1.77	7.03	9.55	0.31
Merged-chr3-97298032-3	chr3	97297897	97298097	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70633.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.65	2.52	2.85	5.23	4.5	5.96	5.31	9.56	10.82	9.04	8.04	7.21
Merged-chr19-55841854-1	chr19	55841754	55841954	+	648.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-53467.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.04	4.02	3.42	6.84	9.0	2.51	2.33	3.81	12.0	5.02	12.06	8.14
Merged-chr1-88285031-3	chr1	88284938	88285138	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7459.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	7.67	7.8	0.0	3.62	6.95	4.7	2.66	6.45	5.7	7.03	10.55	8.77
Merged-chr16-32572703-2	chr16	32572603	32572803	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36193.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	12.52	11.57	5.7	6.03	6.95	8.47	4.65	7.29	4.72	6.53	4.02	5.95
Merged-chr7-45389172-2	chr7	45389046	45389246	+	648.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126539, intron 4 of 9)	intron (NR_126539, intron 4 of 9)	6596.0	NM_009224	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	6.86	3.77	5.7	11.26	9.0	5.64	7.64	8.66	6.1	10.04	18.09	4.7
Merged-chrX-12155823-2	chrX	12155696	12155896	+	648.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	4550.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	1.62	3.77	2.85	0.8	6.14	2.82	4.32	3.87	3.54	3.51	10.05	4.07
Merged-chr7-16783472-1	chr7	16783372	16783572	+	648.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	2126.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	7.67	4.02	1.71	2.41	9.41	8.15	7.31	6.53	4.52	5.02	4.52	3.76
Merged-chr17-71869563-1	chr17	71869463	71869663	+	648.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007439, exon 29 of 29)	exon (NM_007439, exon 29 of 29)	87616.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.83	5.03	4.56	4.42	7.36	7.53	5.98	5.3	0.39	0.0	0.0	0.0
Merged-chr11-85849296-3	chr11	85849198	85849398	+	648.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16683.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	15.34	5.28	14.26	2.41	6.95	5.96	6.98	5.69	7.47	6.53	12.06	6.89
Merged-chr13-73847625-3	chr13	73847524	73847724	+	648.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028186)	promoter-TSS (NM_028186)	7.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	2.42	6.79	12.55	9.25	4.5	7.84	9.3	7.57	10.42	11.05	13.57	10.34
Merged-chr9-40531360-1	chr9	40531260	40531460	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357617)	promoter-TSS (NM_001357617)	23.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.63	4.28	1.14	2.41	2.45	6.59	1.99	5.52	1.18	4.52	2.01	6.89
Merged-chr1-91091715-1	chr1	91091615	91091815	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38271.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.04	3.52	3.99	2.01	4.91	9.72	7.64	2.41	7.08	4.52	4.02	0.94
Merged-chr2-32530630-2	chr2	32530523	32530723	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4736.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.25	1.76	7.99	1.61	6.55	4.7	2.99	11.58	7.67	1.0	5.53	6.89
Merged-chr9-95573419-1	chr9	95573319	95573519	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13602.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	1.21	4.02	3.42	2.82	3.27	0.94	7.31	5.3	3.74	2.51	6.53	3.13
Merged-chr3-107100928-3	chr3	107100889	107101089	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-578.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	2.83	4.02	6.28	5.63	2.86	4.39	3.65	9.62	7.47	3.51	7.54	10.34
Merged-chr10-23853979-1	chr10	23853879	23854079	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011979, intron 2 of 6)	intron (NM_011979, intron 2 of 6)	2517.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	0.5	0.0	0.0	0.82	0.0	0.0	0.0	4.13	5.52	7.03	5.95
Merged-chr5-112951564-1	chr5	112951464	112951664	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-55202.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	5.25	4.53	5.13	6.03	4.5	7.53	5.31	4.54	5.11	2.01	4.52	4.7
Merged-chr10-23787712-1	chr10	23787612	23787812	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-503.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	5.25	12.07	9.7	5.23	6.55	5.96	10.3	5.64	5.11	6.53	6.03	8.77
Merged-chr1-171196348-1	chr1	171196248	171196448	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025557)	promoter-TSS (NM_025557)	-80.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	1.62	6.04	1.14	4.83	3.27	6.59	6.64	5.3	6.29	4.52	5.53	5.33
Merged-chr8-68193587-2	chr8	68193488	68193688	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82940.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	8.08	8.05	15.4	3.62	6.14	3.76	1.33	5.36	9.05	7.03	6.03	6.89
Merged-chr10-98542772-2	chr10	98542662	98542862	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-190895.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	2.42	6.54	10.27	10.86	6.14	5.02	4.65	10.23	11.01	1.51	5.53	6.58
Merged-chr9-44130180-1	chr9	44130080	44130280	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152189, intron 1 of 1)	CpG	4305.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	4.44	6.29	5.7	2.01	3.27	6.59	6.98	5.61	3.15	3.51	4.02	6.89
Merged-chr15-95798742-1	chr15	95798642	95798842	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7899.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	3.23	3.02	1.14	1.61	1.23	7.53	1.33	4.04	4.13	4.52	6.03	2.51
Merged-chr1-85572399-1	chr1	85572299	85572499	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	26411.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.04	2.77	1.14	4.02	6.95	11.92	7.31	3.53	4.33	3.51	7.54	1.57
Merged-chr7-109541757-1	chr7	109541657	109541857	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001326, intron 6 of 19)	intron (NM_001001326, intron 6 of 19)	21625.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	2.02	1.76	0.0	9.25	1.23	6.27	1.99	3.79	3.93	1.51	4.02	2.51
Merged-chr3-97866845-1	chr3	97866745	97866945	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	21862.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.63	4.53	8.56	7.24	5.73	6.59	4.65	9.95	3.93	4.02	6.53	1.88
Merged-chr5-66150150-1	chr5	66150050	66150250	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	828.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.81	2.77	0.0	3.62	3.68	2.51	1.0	2.47	11.8	9.54	2.01	1.88
Merged-chr16-56726824-1	chr16	56726724	56726924	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172825, intron 15 of 15)	L1MEf|LINE|L1	-9374.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	6.46	5.03	3.42	0.8	6.55	1.25	3.65	6.36	5.9	0.5	7.03	8.77
Merged-chr12-40656614-1	chr12	40656514	40656714	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210561.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.63	1.01	2.85	6.44	6.55	5.64	1.66	6.73	5.9	7.53	12.06	4.07
Merged-chr4-55963574-1	chr4	55963474	55963674	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-431099.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.46	0.5	1.71	5.63	2.45	5.02	1.99	6.14	3.34	3.51	4.02	2.51
Merged-chr11-50155041-1	chr11	50154941	50155141	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029745, intron 10 of 20)	intron (NM_029745, intron 10 of 20)	-19810.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	2.02	0.75	2.85	0.0	6.95	5.96	1.33	9.31	1.38	0.0	1.51	0.31
Merged-chr6-113226919-1	chr6	113226819	113227019	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10924.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	4.04	5.03	9.13	1.61	4.09	4.08	1.99	2.52	9.64	7.03	9.04	7.21
Merged-chr1-138124201-2	chr1	138124105	138124305	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	50921.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.06	9.56	4.56	12.07	12.68	2.82	1.66	6.22	7.47	8.54	8.54	3.76
Merged-chr7-123294019-1	chr7	123293919	123294119	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	75896.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	2.42	3.27	4.56	6.44	0.82	0.0	3.99	2.02	1.57	6.53	3.01	4.07
Merged-chr6-73726644-1	chr6	73726544	73726744	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-255623.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.04	3.27	3.42	0.0	6.55	3.14	2.66	14.69	3.93	2.01	0.5	0.0
Merged-chr2-165959944-2	chr2	165959875	165960075	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32662.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.06	4.28	1.14	3.62	4.5	8.78	2.66	4.35	12.0	5.02	9.55	4.07
Merged-chr11-70755867-2	chr11	70755750	70755950	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8597.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	7.67	8.55	0.57	10.05	7.36	4.39	2.33	5.83	14.16	4.02	7.54	6.58
Merged-chr15-76473768-1	chr15	76473668	76473868	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	3501.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	2.83	1.51	1.14	1.21	0.82	2.51	1.66	0.67	7.08	6.53	10.05	6.27
Merged-chr11-100851298-1	chr11	100851198	100851398	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-713.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	8.88	7.29	2.28	3.22	3.68	9.41	2.33	3.42	6.29	6.03	6.03	4.39
Merged-chr2-116999841-2	chr2	116999746	116999946	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	99694.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	2.83	2.01	6.85	2.41	4.5	10.35	8.97	3.93	11.01	4.52	10.05	5.01
Merged-chr3-90446997-1	chr3	90446897	90447097	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13361.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.4	3.77	4.56	0.8	5.73	6.27	2.66	4.79	2.16	6.03	4.02	1.57
Merged-chr19-29641642-2	chr19	29641551	29641751	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	6764.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	12.92	8.8	7.42	5.23	5.73	5.02	5.65	3.56	11.41	9.54	7.03	5.95
Merged-chr7-122919648-1	chr7	122919548	122919748	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50811.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	7.27	0.75	4.56	1.61	13.91	7.53	1.66	4.46	6.29	9.54	7.54	3.45
Merged-chrX-129765447-1	chrX	129765347	129765547	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	intron (NM_172493, intron 1 of 26)	15705.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	2.42	4.28	0.57	5.63	5.73	0.94	5.65	4.63	8.06	2.01	1.0	5.01
Merged-chr16-94720638-1	chr16	94720538	94720738	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	109219.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.63	0.0	3.42	3.62	5.32	6.59	1.33	6.0	7.28	1.51	7.03	3.76
Merged-chr17-57305831-2	chr17	57305736	57305936	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 19 of 25)	ZP3AR|Satellite|Satellite	26736.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	9.29	8.55	10.27	4.02	6.55	12.23	3.32	2.13	11.21	9.04	21.61	1.57
Merged-chr11-118237476-1	chr11	118237376	118237576	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11116.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.83	2.01	5.7	4.83	9.82	2.82	2.66	5.05	5.11	9.04	5.53	3.13
Merged-chr5-104025593-1	chr5	104025493	104025693	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3797.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	6.46	5.28	7.99	0.8	0.82	14.42	7.97	4.07	5.51	5.02	2.01	1.88
Merged-chr9-16226352-1	chr9	16226252	16226452	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	151879.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.83	2.01	3.42	6.44	2.45	5.33	2.66	7.46	6.29	2.01	3.01	2.82
Merged-chr11-67975149-1	chr11	67975049	67975249	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001361352)	TTS (NM_001361352)	8691.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	6.06	4.28	7.99	0.8	8.59	1.57	2.99	5.38	7.28	1.51	3.52	1.88
Merged-chr5-141064963-1	chr5	141064863	141065063	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-64367.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.65	4.28	10.84	4.02	4.09	5.96	4.65	6.2	6.1	5.52	5.53	5.64
Merged-chr6-33540240-1	chr6	33540140	33540340	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	291112.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.04	1.01	10.27	4.83	4.91	3.76	6.31	4.88	8.65	5.02	5.53	3.45
Merged-chr11-30755055-1	chr11	30754955	30755155	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-16720.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	10.9	7.29	9.13	4.42	3.68	10.03	11.96	3.56	7.28	4.52	7.03	5.64
Merged-chr11-96969290-2	chr11	96969174	96969374	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	8414.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	3.23	9.06	9.13	5.63	3.68	5.64	7.64	8.16	4.52	6.03	7.54	4.39
Merged-chr2-6557172-1	chr2	6557072	6557272	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	164490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.85	5.53	10.27	8.04	6.55	1.88	2.66	15.64	6.29	1.51	0.0	2.51
Merged-chr8-91051861-2	chr8	91051762	91051962	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18195.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	3.23	4.02	6.28	1.21	8.18	5.33	4.65	6.39	9.64	3.01	11.05	3.45
Merged-chr2-129472107-1	chr2	129472007	129472207	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 3 of 6)	intron (NM_177653, intron 3 of 6)	64495.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.65	6.29	1.14	2.01	4.5	8.78	1.99	4.79	12.0	4.52	9.04	4.7
Merged-chr3-90445619-1	chr3	90445519	90445719	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-11983.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	1.62	1.26	4.56	2.01	9.0	8.47	2.99	3.14	7.87	3.01	8.04	0.63
Merged-chr2-102945282-1	chr2	102945182	102945382	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43617.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.06	1.76	3.42	6.03	9.41	4.39	1.0	4.51	4.72	8.03	7.03	7.83
Merged-chr10-61068632-1	chr10	61068532	61068732	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20699.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	7.67	6.79	3.99	6.44	6.95	4.08	1.66	2.94	12.19	4.52	4.52	3.13
Merged-chr2-120563449-1	chr2	120563349	120563549	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	410.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	6.86	10.82	3.42	6.03	7.36	6.9	3.65	4.15	9.64	13.05	14.57	11.28
Merged-chr16-64876945-2	chr16	64876853	64877053	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	24952.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	8.48	3.02	3.99	8.45	8.59	2.82	3.32	12.06	4.52	11.05	11.05	8.14
Merged-chr18-46947550-2	chr18	46947451	46947651	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11325.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	8.08	7.55	5.13	3.22	6.95	6.9	2.33	3.64	2.95	3.01	7.54	5.33
Merged-chr5-102571612-2	chr5	102571524	102571724	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	90233.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	4.85	3.52	11.41	1.61	4.91	3.14	4.32	8.41	2.16	6.53	13.06	8.77
Merged-chr10-100030936-1	chr10	100030836	100031036	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15115.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	1.62	2.01	0.57	0.8	4.09	2.2	4.65	5.21	5.51	4.02	1.51	2.19
Merged-chr2-155514860-2	chr2	155514757	155514957	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144786)	promoter-TSS (NM_144786)	-11.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	3.63	2.52	6.85	6.84	5.32	10.98	1.33	7.65	6.88	6.03	9.55	2.82
Merged-chr6-100288700-1	chr6	100288600	100288800	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.81	2.01	4.56	3.22	3.27	3.14	3.99	2.27	6.1	2.01	6.03	5.64
Merged-chr10-53344919-3	chr10	53344835	53345035	+	647.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	7249.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	2.83	7.55	12.55	12.87	4.09	4.08	4.65	5.89	13.18	6.03	12.56	8.46
Merged-chr11-94692668-2	chr11	94692545	94692745	+	647.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	11854.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	3.63	5.79	11.98	6.44	7.36	12.54	7.31	4.26	7.67	10.54	12.06	10.02
Merged-chr3-121637961-3	chr3	121637863	121638063	+	647.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036458, intron 2 of 2)	intron (NR_036458, intron 2 of 2)	5522.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	7.27	7.55	3.42	4.42	10.23	7.21	12.29	9.39	10.62	14.56	10.55	5.95
Merged-chr16-91456822-2	chr16	91456741	91456941	+	647.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-8263.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.25	5.28	4.56	2.01	9.41	7.53	4.65	4.29	10.62	12.05	13.06	9.08
Merged-chr2-102760590-2	chr2	102760441	102760641	+	647.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-13781.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.62	4.28	4.56	8.85	6.14	4.7	5.65	3.76	3.74	12.05	3.52	3.45
Merged-chr9-58580964-2	chr9	58580844	58581044	+	647.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1296.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	8.88	3.52	0.0	4.83	15.96	7.21	7.97	5.13	10.23	8.03	9.04	3.13
Merged-chr2-6642515-2	chr2	6642434	6642634	+	647.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	79128.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.42	3.27	11.98	8.85	1.23	5.02	1.33	6.53	6.88	6.03	7.03	1.88
Merged-chr5-85937069-2	chr5	85936963	85937163	+	647.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128520.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	4.04	3.02	1.14	4.02	9.41	5.64	6.31	6.84	8.06	5.02	11.05	5.33
Merged-chr6-51384174-3	chr6	51384136	51384336	+	647.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110455, intron 1 of 2)	intron (NR_110455, intron 1 of 2)	4526.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	1.21	5.53	1.71	6.03	2.86	5.64	5.65	3.56	7.28	6.03	7.54	6.27
Merged-chr1-55051583-1	chr1	55051483	55051683	+	647.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1187.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	7.67	3.02	6.28	4.02	0.82	3.45	2.66	5.21	9.64	8.03	12.56	9.71
Merged-chrX-102102023-1	chrX	102101923	102102123	+	647.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17442.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	2.42	1.26	5.13	3.22	4.91	5.02	4.65	5.83	5.11	3.51	7.54	1.25
Merged-chr9-3006849-3	chr9	3006752	3006952	+	647.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	31891.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	11.71	15.34	6.85	22.12	15.14	4.7	29.9	0.0	8.65	11.05	12.06	9.71
Merged-chr17-28621898-2	chr17	28621794	28621994	+	647.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016795, intron 2 of 15)	CpG	627.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	7.67	5.79	2.28	8.45	6.55	10.03	4.98	3.59	8.65	7.03	10.05	3.76
Merged-chr17-34693230-2	chr17	34693143	34693343	+	647.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031176, intron 12 of 32)	intron (NM_031176, intron 12 of 32)	22708.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	8.88	5.53	9.13	5.63	2.86	4.7	1.99	3.87	14.16	10.54	14.07	3.13
Merged-chr11-109368355-3	chr11	109368242	109368442	+	647.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-4688.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	11.31	11.07	9.13	9.65	6.95	5.02	6.98	7.71	11.01	4.52	4.52	8.77
Merged-chr2-164909783-3	chr2	164909716	164909916	+	647.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199027, intron 2 of 27)	intron (NM_199027, intron 2 of 27)	1934.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	7.67	8.3	6.28	11.26	7.36	9.72	4.32	4.93	7.28	4.52	13.57	6.58
Merged-chr3-16043480-2	chr3	16043388	16043588	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37156.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	7.67	7.29	6.85	9.25	2.45	8.15	4.65	7.18	8.46	6.03	5.53	3.13
Merged-chr16-23927923-1	chr16	23927823	23928023	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008230, intron 1 of 1)	intron (NM_001008230, intron 1 of 1)	2871.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	0.0	2.26	2.28	4.83	2.45	6.59	4.32	4.21	2.36	5.02	4.52	2.82
Merged-chr17-47006228-2	chr17	47006134	47006334	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146078, intron 1 of 46)	L1MB5|LINE|L1	4298.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	3.63	2.26	4.56	2.01	7.36	1.57	4.65	7.54	7.47	1.0	1.51	9.08
Merged-chr2-12024122-1	chr2	12024022	12024222	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	246369.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	5.65	3.02	5.7	5.63	1.23	6.59	4.32	6.87	6.69	3.01	5.02	5.33
Merged-chr9-121759256-2	chr9	121759111	121759311	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166644)	promoter-TSS (NM_001166644)	732.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	2.83	1.76	6.28	6.44	2.86	4.39	0.66	2.3	1.57	8.54	7.54	7.21
Merged-chr6-135175190-1	chr6	135175090	135175290	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-6975.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	4.85	1.76	2.28	3.22	7.77	6.27	2.33	4.43	0.39	2.51	0.0	1.25
Merged-chr7-16097163-2	chr7	16097042	16097242	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347559)	TTS (NM_001347559)	-1438.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	6.06	3.52	7.99	2.41	8.18	5.96	1.0	5.47	8.06	6.03	4.02	7.52
Merged-chr6-84061501-2	chr6	84061418	84061618	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	42132.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.23	4.78	9.13	9.25	4.91	4.7	1.33	6.5	9.24	7.03	10.55	4.07
Merged-chr3-149086732-2	chr3	149086635	149086835	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132100.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.65	4.53	0.0	11.66	6.55	3.45	3.32	10.23	11.21	4.52	12.56	5.95
Merged-chr14-104465771-1	chr14	104465671	104465871	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011143, exon 2 of 3)	exon (NM_011143, exon 2 of 3)	2228.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.81	2.52	3.99	2.41	6.14	1.25	6.64	4.21	8.06	2.01	6.03	3.76
Merged-chr1-97716640-1	chr1	97716540	97716740	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	53452.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	4.04	3.77	1.14	1.21	5.73	5.02	1.33	5.52	10.42	3.51	7.54	1.88
Merged-chr15-100755002-2	chr15	100754902	100755102	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6745.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	5.65	2.26	6.85	7.64	7.36	7.21	2.33	3.42	11.21	1.51	17.59	5.64
Merged-chr3-75279846-1	chr3	75279746	75279946	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9768.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	2.42	1.01	3.42	2.41	9.41	5.33	8.64	4.43	5.11	4.02	10.05	5.01
Merged-chr19-53140575-1	chr19	53140475	53140675	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001164099, exon 1 of 15)	5' UTR (NM_001164099, exon 1 of 15)	132.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.04	4.53	6.28	2.01	4.91	6.27	4.98	3.39	2.56	3.01	5.02	8.46
Merged-chr11-61714790-2	chr11	61714706	61714906	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033227, intron 6 of 15)	intron (NM_001033227, intron 6 of 15)	5993.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	10.5	2.52	11.41	2.01	5.32	8.78	1.66	3.7	12.19	9.04	13.57	7.21
Merged-chr19-11810610-2	chr19	11810507	11810707	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	8796.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	19.38	6.79	10.27	2.82	7.36	12.54	5.31	5.5	3.54	8.03	2.51	2.19
Merged-chr4-132074229-1	chr4	132074129	132074329	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	1084.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	1.21	2.01	3.42	6.84	8.18	1.88	5.65	4.74	4.33	8.54	5.02	8.77
Merged-chr7-97944690-2	chr7	97944593	97944793	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177696, intron 1 of 17)	L1_Mur3|LINE|L1	24735.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	7.27	8.05	9.13	4.42	11.45	6.9	1.0	5.86	11.6	9.04	15.07	4.7
Merged-chr6-135160199-2	chr6	135160110	135160310	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	ID_B1|SINE|B4	8005.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	7.27	1.51	10.84	15.69	1.64	0.63	5.31	4.82	4.52	1.0	2.51	0.0
Merged-chr8-105304136-2	chr8	105304037	105304237	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-1464.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	6.06	6.29	3.42	6.44	7.77	5.02	5.31	6.22	10.42	3.51	17.08	8.77
Merged-chr18-38440012-2	chr18	38439915	38440115	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21108.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	2.42	3.02	1.71	6.84	1.23	5.96	2.66	5.55	9.44	9.54	1.51	2.19
Merged-chr4-147867738-1	chr4	147867638	147867838	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025365, intron 1 of 9)	intron (NM_001025365, intron 1 of 9)	981.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	4.04	2.52	5.13	4.42	9.41	4.39	3.99	5.58	5.31	3.51	8.04	4.39
Merged-chr12-80725040-1	chr12	80724940	80725140	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177503)	TTS (NM_001177503)	32439.0	NM_001177503	217682.0	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	2.42	4.02	2.28	0.8	0.0	9.72	2.66	4.77	6.88	1.51	6.53	3.45
Merged-chr13-51424873-3	chr13	51424761	51424961	+	647.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16243.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	8.88	5.03	6.28	12.87	5.32	7.21	10.3	7.04	15.34	7.03	9.55	6.58
Merged-chr2-76088663-2	chr2	76088582	76088782	+	647.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081033, intron 10 of 19)	intron (NM_001081033, intron 10 of 19)	-106715.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	1.21	6.54	10.27	5.63	6.14	5.64	10.3	6.7	3.34	1.51	7.54	3.76
Merged-chr6-103367246-2	chr6	103367162	103367362	+	647.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-143614.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	8.88	4.53	10.27	10.86	2.45	3.14	4.65	6.42	0.59	4.02	2.01	3.13
Merged-chr12-98884719-2	chr12	98884611	98884811	+	647.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	16773.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	8.08	6.04	7.42	6.03	1.64	8.47	2.99	4.32	12.59	9.54	13.06	3.13
Merged-chr1-119997270-2	chr1	119997178	119997378	+	647.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2068.0	NM_001115074	226356.0	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	6.06	2.26	13.12	8.04	6.55	6.59	6.98	9.2	7.28	13.56	10.05	8.46
Merged-chr6-124863760-1	chr6	124863660	124863860	+	647.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013488)	TTS (NM_013488)	223.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	6.46	5.79	3.42	4.83	11.05	8.47	4.98	2.83	4.72	6.03	7.54	6.27
Merged-chr19-38030898-3	chr19	38030812	38031012	+	647.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12665.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	9.29	5.53	3.42	6.03	8.18	8.78	4.98	7.71	8.26	6.03	16.58	2.51
Merged-chr13-61241741-2	chr13	61241649	61241849	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13599.0	NM_019541	56094.0	Mm.342861	NM_019541	ENSMUSG00000057446	Cts8	CTS2|Epcs68|Epcs70	cathepsin 8	protein-coding	5.25	4.28	9.13	6.03	8.18	10.03	4.65	6.34	9.83	9.04	8.04	8.77
Merged-chr19-4441343-1	chr19	4441243	4441443	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	1784.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	5.65	6.29	0.0	0.0	5.32	6.27	3.32	4.54	14.95	7.03	8.54	3.13
Merged-chr4-137338647-2	chr4	137338547	137338747	+	647.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	19112.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	10.5	7.55	4.56	0.8	6.55	10.98	2.33	5.41	6.29	8.54	7.03	1.88
Merged-chr7-3630560-2	chr7	3630431	3630631	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290381)	promoter-TSS (NM_001290381)	546.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	4.44	5.28	0.0	4.42	3.27	1.88	6.98	5.83	7.87	8.03	4.02	6.58
Merged-chr19-34826404-2	chr19	34826319	34826519	+	647.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114339, intron 3 of 6)	intron (NM_001114339, intron 3 of 6)	-5646.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	7.27	6.04	5.7	4.42	6.14	4.7	4.98	8.41	8.46	12.05	7.03	6.58
Merged-chr11-9117997-2	chr11	9117890	9118090	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159402)	promoter-TSS (NM_001159402)	-18.0	NM_001159401	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	6.06	7.55	6.28	6.44	7.36	5.33	9.3	8.8	9.83	9.04	8.04	3.76
Merged-chr12-76710134-2	chr12	76710004	76710204	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013675, exon 1 of 36)	5' UTR (NM_013675, exon 1 of 36)	443.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	5.65	6.04	7.42	5.23	6.55	7.21	2.99	6.62	9.64	6.03	6.53	4.39
Merged-chr14-51984908-2	chr14	51984822	51985022	+	647.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	89.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	9.69	12.83	5.7	6.44	7.36	9.09	6.31	6.0	5.7	5.02	6.53	1.25
Merged-chr4-150073296-2	chr4	150073195	150073395	+	647.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4841.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	5.65	5.28	13.69	5.23	8.18	10.03	7.64	5.36	13.57	5.52	13.57	8.46
Merged-chr6-117190640-1	chr6	117190540	117190740	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22105.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	1.62	2.01	3.42	7.24	4.09	1.88	5.98	5.97	1.38	2.01	10.05	2.82
Merged-chr9-53696080-1	chr9	53695980	53696180	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	PB1D7|SINE|Alu	10152.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.4	2.26	3.42	4.42	4.5	5.02	2.33	5.78	4.33	3.01	1.0	3.45
Merged-chr7-81344616-1	chr7	81344516	81344716	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009092, intron 2 of 4)	CpG	618.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	2.02	3.77	1.14	6.03	4.91	6.9	7.31	6.08	10.03	7.03	10.55	5.64
Merged-chr3-69009533-1	chr3	69009433	69009633	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_029529)	promoter-TSS (NR_029529)	-239.0	NR_029529	387175.0		NR_029529	ENSMUSG00000065580	Mir15b	Mirn15b|mir-15b|mmu-mir-15b	microRNA 15b	ncRNA	3.23	3.02	10.27	18.1	5.32	3.14	4.65	4.77	7.28	6.03	10.55	4.7
Merged-chr13-112438124-1	chr13	112438024	112438224	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-25946.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	13.33	6.79	15.97	10.86	1.23	1.88	0.0	1.23	4.92	3.51	2.51	6.89
Merged-chrX-137015575-1	chrX	137015475	137015675	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082412, intron 5 of 6)	intron (NM_001082412, intron 5 of 6)	22398.0	NM_001358440	66995.0	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	0.0	2.77	2.28	1.61	6.14	3.45	0.66	6.25	6.49	7.03	4.52	2.51
Merged-chr19-55806987-2	chr19	55806886	55807086	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	65176.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.46	6.54	13.69	2.82	7.36	5.96	3.65	9.56	3.54	5.02	4.02	5.01
Merged-chr9-44498608-2	chr9	44498500	44498700	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030256)	promoter-TSS (NM_030256)	-536.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	8.88	8.3	3.42	4.42	7.77	14.74	3.99	5.97	13.37	7.53	3.52	4.7
Merged-chr1-23495626-1	chr1	23495526	23495726	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M8|LINE|L1	-78961.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	1.62	2.26	1.71	0.8	7.36	6.59	4.32	5.69	8.65	5.52	4.52	4.39
Merged-chr14-65781756-1	chr14	65781656	65781856	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-24155.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	5.65	5.53	0.0	1.61	6.14	3.14	4.98	8.21	0.98	0.0	2.01	3.76
Merged-chr13-119790073-2	chr13	119789957	119790157	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302550, intron 2 of 6)	intron (NM_001302550, intron 2 of 6)	401.0	NM_001302547	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	9.69	5.03	3.42	4.83	6.95	3.14	4.32	5.02	3.15	8.03	5.53	7.21
Merged-chr6-32346139-1	chr6	32346039	32346239	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-165002.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	1.62	0.75	2.28	0.8	0.0	2.51	10.63	6.59	2.16	0.0	2.01	2.51
Merged-chr13-113611792-1	chr13	113611692	113611892	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6772.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.65	6.29	5.7	1.61	9.82	11.6	8.64	2.94	11.6	15.06	8.04	7.52
Merged-chr9-40346537-1	chr9	40346437	40346637	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357619)	promoter-TSS (NM_001357619)	-292.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.44	2.26	3.99	1.61	2.05	3.45	1.0	0.9	4.72	2.51	2.01	2.19
Merged-chr16-89959138-2	chr16	89959014	89959214	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	1713.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	8.88	7.55	10.27	8.04	5.73	4.39	3.32	7.37	7.67	0.5	5.53	2.19
Merged-chr4-136125210-1	chr4	136125110	136125310	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18612.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.04	1.76	1.71	3.22	3.68	2.51	2.33	3.53	9.64	6.53	3.52	6.58
Merged-chr9-57580113-1	chr9	57580013	57580213	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022813, intron 4 of 8)	intron (NM_022813, intron 4 of 8)	-9339.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	1.21	1.01	2.28	2.01	3.27	6.59	4.65	5.3	4.52	0.0	10.05	5.01
Merged-chr4-122961159-1	chr4	122961059	122961259	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	29.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	7.67	8.3	3.42	13.27	1.64	5.02	4.98	3.5	7.28	12.55	9.04	5.33
Merged-chr2-105676264-1	chr2	105676164	105676364	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013627, exon 1 of 13)	5' UTR (NM_013627, exon 1 of 13)	135.0	NM_001244202	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	1.62	4.53	3.99	1.21	8.18	5.64	6.64	6.56	1.18	1.51	2.01	5.95
Merged-chr7-16099636-3	chr7	16099557	16099757	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	1077.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	3.63	4.02	3.99	11.66	2.05	3.76	7.64	4.6	7.08	8.03	7.54	7.83
Merged-chr4-135874662-1	chr4	135874562	135874762	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-816.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	1.62	0.0	1.14	1.21	6.55	3.76	7.64	5.3	5.9	5.02	3.01	2.82
Merged-chrX-109198179-1	chrX	109198079	109198279	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037917, exon 2 of 2)	exon (NM_001037917, exon 2 of 2)	1423.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	2.83	0.5	5.7	6.03	6.14	2.51	1.99	5.13	4.33	1.0	2.51	1.25
Merged-chr13-59508766-1	chr13	59508666	59508866	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	35685.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	5.25	6.54	5.7	9.25	3.68	10.98	1.99	5.75	5.7	4.02	7.54	3.13
Merged-chr16-65567374-1	chr16	65567274	65567474	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4677.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.81	4.53	5.7	4.02	4.09	2.2	1.0	4.6	6.49	4.02	7.54	2.51
Merged-chr2-165885234-1	chr2	165885134	165885334	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-396.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.42	0.75	1.71	3.62	3.27	3.45	3.65	3.2	5.7	11.55	6.03	13.47
Merged-chr11-69098135-1	chr11	69098035	69098235	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-814.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	4.04	2.77	1.71	4.02	2.05	4.39	5.31	2.41	11.21	8.03	2.51	10.34
Merged-chr13-113032155-1	chr13	113032055	113032255	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3224.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	13.33	5.03	8.56	4.83	7.77	1.57	0.33	4.51	5.31	5.52	5.53	5.95
Merged-chr18-25472135-1	chr18	25472035	25472235	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	207613.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.21	0.25	0.0	2.82	6.55	7.84	2.66	2.38	1.97	2.01	2.51	2.82
Merged-chr8-25784441-1	chr8	25784341	25784541	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026121, intron 1 of 4)	intron (NM_026121, intron 1 of 4)	768.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	3.23	3.27	6.85	5.63	10.64	1.88	4.32	5.69	4.92	2.01	3.52	0.94
Merged-chr3-107037729-1	chr3	107037629	107037829	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	1567.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	2.83	7.8	3.99	0.8	2.45	6.27	5.31	5.83	5.31	2.01	5.53	5.33
Merged-chr5-35727681-1	chr5	35727581	35727781	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1595.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	1.62	1.26	0.0	2.01	2.86	6.27	2.99	5.92	3.54	1.51	5.53	2.82
Merged-chr4-149783282-2	chr4	149783183	149783383	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9016.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.08	3.77	6.28	5.23	9.41	1.57	1.99	5.72	7.67	3.01	10.55	8.77
Merged-chr14-20930151-1	chr14	20930051	20930251	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	753.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	3.23	5.53	1.71	2.41	2.05	0.94	7.31	3.53	2.95	0.5	0.0	5.01
Merged-chrX-155212786-1	chrX	155212686	155212886	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001291865)	TTS (NM_001291865)	3663.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	4.04	4.02	6.28	2.82	6.14	5.64	1.99	7.54	3.93	5.52	2.01	0.31
Merged-chr18-17490898-1	chr18	17490798	17490998	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90092.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	8.08	3.27	1.14	1.61	9.82	2.2	5.31	4.91	1.38	0.0	2.01	2.51
Merged-chr4-57017394-1	chr4	57017294	57017494	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355492, intron 21 of 24)	intron (NM_001355492, intron 21 of 24)	-27003.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	4.04	3.02	1.14	0.0	3.68	5.02	1.33	7.65	2.56	6.03	6.03	3.45
Merged-chr10-25313291-1	chr10	25313191	25313391	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14128.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.85	3.02	0.0	0.0	4.09	1.25	7.64	4.29	1.57	2.01	1.0	0.31
Merged-chr9-20857322-1	chr9	20857222	20857422	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11320.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	6.46	4.28	1.14	6.44	7.36	1.57	3.32	6.84	11.01	4.52	8.04	4.07
Merged-chrY-90810941-1	chrY	90810841	90811041	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	25499.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.81	2.01	0.0	0.0	1.23	0.94	3.32	1.04	5.11	11.55	4.52	10.34
Merged-chrX-21089746-1	chrX	21089646	21089846	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183185)	promoter-TSS (NM_183185)	-517.0	NM_183185	245368.0	Mm.220470	NM_183185	ENSMUSG00000031079	Zfp300	D930016N04Rik	zinc finger protein 300	protein-coding	2.42	1.51	1.14	4.83	1.23	6.59	4.65	4.49	4.13	3.51	3.52	3.13
Merged-chr2-32845952-1	chr2	32845852	32846052	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	1280.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	6.86	5.28	7.99	5.63	6.14	5.96	3.32	3.87	8.46	5.02	4.02	8.46
Merged-chr7-55910217-1	chr7	55910117	55910317	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	52276.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.65	2.26	2.28	2.82	4.5	6.59	7.64	4.51	2.36	2.51	5.02	5.01
Merged-chr4-109147760-1	chr4	109147660	109147860	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-9847.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	2.42	1.76	2.28	4.02	1.23	4.7	1.33	4.18	4.13	2.01	3.01	6.27
Merged-chr7-16614266-2	chr7	16614175	16614375	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136929, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	235.0	NR_136929	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	5.25	5.03	8.56	9.25	6.14	10.98	6.98	8.24	13.37	13.56	16.08	9.4
Merged-chr5-66169298-1	chr5	66169198	66169398	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040695, intron 2 of 2)	RSINE1|SINE|B4	-17344.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.23	3.27	3.99	0.8	3.68	2.51	5.65	5.58	4.92	7.53	3.52	2.19
Merged-chr11-4336041-1	chr11	4335941	4336141	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69245.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.81	0.0	0.0	0.0	6.14	5.02	3.32	6.14	0.59	0.0	0.0	0.31
Merged-chr1-184589507-1	chr1	184589407	184589607	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31816.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.65	1.76	4.56	5.63	5.73	5.64	2.99	5.38	2.56	9.04	6.03	6.27
Merged-chr7-120102893-1	chr7	120102793	120102993	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145586, intron 1 of 4)	intron (NM_145586, intron 1 of 4)	467.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	6.46	2.01	1.14	6.03	9.82	5.33	0.33	4.91	7.08	13.05	12.56	6.58
Merged-chr15-10890442-1	chr15	10890342	10890542	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61391.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.81	6.29	4.56	3.22	2.45	2.51	5.31	5.64	2.95	2.51	6.03	5.64
Merged-chr13-28607831-1	chr13	28607731	28607931	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	103042.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	2.02	5.79	2.85	8.04	1.23	5.02	11.29	6.64	1.57	4.02	1.51	5.64
Merged-chr12-119313606-1	chr12	119313506	119313706	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-75330.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	4.04	6.79	7.99	10.46	6.55	3.14	3.65	7.82	4.52	5.02	6.53	3.76
Merged-chr2-166074331-1	chr2	166074231	166074431	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028072, exon 21 of 21)	3' UTR (NM_028072, exon 21 of 21)	80954.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.25	2.77	2.28	2.82	1.64	5.02	0.33	0.7	3.93	6.03	2.01	5.01
Merged-chr11-78114888-2	chr11	78114776	78114976	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20203.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	12.92	8.3	13.12	12.47	2.86	6.9	1.66	5.69	8.26	8.03	5.53	7.21
Merged-chr1-171033786-1	chr1	171033686	171033886	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14860.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.44	0.5	4.56	5.23	2.45	9.72	1.99	1.07	1.97	2.51	2.51	0.31
Merged-chr13-51845218-1	chr13	51845118	51845318	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1457.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	8.08	5.28	2.28	4.83	5.73	7.84	4.65	3.36	8.26	12.05	7.54	5.33
Merged-chr2-105835103-1	chr2	105835003	105835203	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023876, intron 4 of 9)	intron (NM_023876, intron 4 of 9)	69461.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	1.62	5.03	7.42	8.85	4.09	0.63	3.99	2.92	9.64	7.03	10.55	5.33
Merged-chr18-11837054-2	chr18	11836952	11837152	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-2222.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	6.86	4.78	1.71	3.62	4.09	2.82	2.33	6.76	12.19	11.05	8.04	2.19
Merged-chr14-122029231-1	chr14	122029131	122029331	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5443.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.81	2.01	0.57	1.61	5.32	1.57	6.64	4.79	1.57	4.52	4.02	4.39
Merged-chr1-80638061-1	chr1	80637961	80638161	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27291.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	1.62	2.26	6.28	0.0	3.27	5.02	5.31	6.06	7.47	1.0	4.02	3.13
Merged-chr1-95380700-1	chr1	95380600	95380800	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	67072.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.4	0.75	1.14	3.22	7.36	0.0	1.99	6.0	1.77	0.0	1.51	2.82
Merged-chr7-128208281-1	chr7	128208181	128208381	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1915.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	5.25	5.53	6.85	2.01	2.45	2.2	4.98	0.9	5.51	12.05	7.54	5.01
Merged-chr1-88276371-1	chr1	88276271	88276471	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1186.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	5.25	3.52	1.71	6.44	7.77	8.47	5.31	4.23	9.05	4.52	8.04	7.83
Merged-chr14-31401529-3	chr14	31401416	31401616	+	646.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16161.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.08	6.54	3.99	1.61	9.0	10.03	5.31	15.42	6.69	2.01	12.56	12.53
Merged-chr2-119336677-2	chr2	119336586	119336786	+	646.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10489.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	9.69	11.32	6.28	8.04	9.0	5.96	2.99	7.51	3.34	2.01	8.04	3.13
Merged-chr2-85007935-2	chr2	85007846	85008046	+	646.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145526, intron 8 of 11)	B2_Mm2|SINE|B2	19731.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	3.23	2.52	6.28	8.85	6.14	5.33	8.64	4.63	6.88	5.52	11.56	13.16
Merged-chr11-77493795-3	chr11	77493697	77493897	+	646.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004144, intron 1 of 19)	CpG	385.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	5.65	5.03	6.28	5.63	9.41	9.09	11.29	5.36	7.47	8.03	3.01	8.14
Merged-chr2-129403114-1	chr2	129403014	129403214	+	646.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31975.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.62	3.27	0.0	0.0	8.59	3.76	8.64	5.44	0.2	1.0	0.0	0.63
Merged-chr7-123149091-2	chr7	123149004	123149204	+	646.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144925, intron 3 of 23)	intron (NM_144925, intron 3 of 23)	25219.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	4.85	5.53	6.28	9.65	3.68	2.2	6.31	9.42	9.44	7.03	11.05	6.58
Merged-chr4-138319689-2	chr4	138319599	138319799	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026880, intron 3 of 7)	intron (NM_026880, intron 3 of 7)	-3499.0	NR_105986	102466788.0		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	8.88	7.8	6.85	6.44	8.18	13.8	1.33	3.08	14.75	8.54	13.06	12.22
Merged-chr3-16005563-2	chr3	16005444	16005644	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	Lx2|LINE|L1	788.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	8.48	3.52	6.85	6.84	3.27	7.21	6.98	4.71	8.06	6.03	5.53	9.4
Merged-chr13-41825746-2	chr13	41825637	41825837	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	21751.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	6.86	6.79	9.7	12.07	8.18	6.59	3.99	9.76	8.46	5.02	6.53	4.7
Merged-chr14-65805921-2	chr14	65805865	65806065	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023209)	promoter-TSS (NM_023209)	54.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	2.83	5.53	1.14	7.24	4.09	3.76	3.32	3.11	12.39	4.52	10.05	2.82
Merged-chr18-42589649-2	chr18	42589560	42589760	+	646.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10008.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	8.88	7.04	5.7	1.61	4.5	5.33	1.66	4.21	12.19	16.07	13.57	9.08
Merged-chr4-19567071-1	chr4	19566971	19567171	+	646.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027769, intron 1 of 15)	PB1D9|SINE|Alu	3037.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	6.86	3.27	3.42	4.02	6.95	7.53	5.65	4.4	2.95	1.51	0.0	0.94
Merged-chr1-172315170-1	chr1	172315070	172315270	+	646.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	2803.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	5.25	4.28	0.0	1.21	0.82	11.6	7.64	4.82	4.13	5.52	2.01	10.02
Merged-chr5-96172031-1	chr5	96171931	96172131	+	646.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10041.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	2.42	0.5	7.99	3.62	0.82	4.7	3.99	7.51	7.67	6.03	9.04	6.89
Merged-chr11-57698488-1	chr11	57698388	57698588	+	646.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-48994.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	5.65	3.52	6.85	2.41	6.14	8.78	6.98	5.78	0.0	0.0	2.51	0.63
Merged-chr12-4641026-1	chr12	4640926	4641126	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001198969, exon 17 of 17)	3' UTR (NM_001198969, exon 17 of 17)	48018.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.63	4.53	6.85	6.44	5.32	9.72	3.65	4.21	6.69	5.52	8.04	3.13
Merged-chr17-55958413-2	chr17	55958262	55958462	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028381)	promoter-TSS (NM_028381)	-825.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	3.23	5.53	1.71	6.03	5.73	6.59	6.98	0.34	6.69	7.53	4.02	3.13
Merged-chr4-41098284-2	chr4	41098202	41098402	+	646.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016689)	promoter-TSS (NM_016689)	-119.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	5.25	8.8	2.28	4.83	1.64	3.76	11.96	7.43	8.06	4.02	4.52	5.64
Merged-chr2-31094774-1	chr2	31094674	31094874	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	1726.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.04	4.78	7.99	3.22	6.95	7.21	1.33	5.72	0.98	2.01	1.51	0.94
Merged-chr3-14893210-1	chr3	14893110	14893310	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	6922.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	2.42	3.52	2.28	8.04	4.91	8.47	1.66	5.3	0.79	2.01	4.02	2.82
Merged-chr4-55838646-2	chr4	55838550	55838750	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-306175.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.65	3.52	5.7	14.08	1.64	5.33	2.33	6.98	8.06	0.5	8.54	4.39
Merged-chr5-136566420-2	chr5	136566348	136566548	+	646.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291233)	promoter-TSS (NM_001291233)	-467.0	NM_001291233	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	9.69	5.53	5.13	7.64	6.55	4.08	2.66	2.38	8.26	7.53	3.52	3.45
Merged-chr2-126712740-2	chr2	126712636	126712836	+	646.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5408.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	6.06	10.56	14.83	6.03	4.91	3.76	3.65	10.63	9.44	3.51	9.04	8.46
Merged-chr5-64377889-3	chr5	64377802	64378002	+	646.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	90040.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.25	9.56	2.28	9.25	8.59	7.21	5.98	5.38	12.39	10.54	8.04	3.45
Merged-chr6-72535348-3	chr6	72535259	72535459	+	646.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9032.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	13.33	8.8	6.28	10.46	9.0	10.35	4.65	6.95	7.87	5.52	10.55	9.4
Merged-chr18-35540211-3	chr18	35540116	35540316	+	646.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13194.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	13.73	8.3	4.56	10.86	9.41	11.6	6.31	5.38	9.64	14.56	13.57	6.89
Merged-chr3-90005148-2	chr3	90005042	90005242	+	646.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001165988)	TTS (NM_001165988)	6068.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	4.04	3.52	13.12	8.04	5.73	6.59	7.97	6.93	13.18	9.04	14.07	7.83
Merged-chr2-126658581-2	chr2	126658497	126658697	+	646.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355108, intron 1 of 7)	intron (NM_001355108, intron 1 of 7)	16755.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	7.27	7.8	11.41	6.44	1.64	13.48	6.98	3.2	11.41	6.03	10.05	7.52
Merged-chrX-139480158-2	chrX	139480067	139480267	+	646.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346522)	promoter-TSS (NM_001346522)	-200.0	NM_175326	102871.0	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325|Radx	RIKEN cDNA D330045A20 gene	protein-coding	4.04	3.77	5.7	4.83	6.55	6.59	3.32	6.31	9.44	3.01	10.55	7.83
Merged-chr9-71616203-1	chr9	71616103	71616303	+	646.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23843.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	2.42	4.02	5.7	0.8	6.14	3.14	1.99	2.89	2.36	4.02	3.01	4.07
Merged-chr12-72768433-3	chr12	72768335	72768535	+	646.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	7224.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	6.46	7.55	0.57	5.63	7.77	3.14	2.66	9.81	9.83	6.53	20.1	3.76
Merged-chr1-63113007-3	chr1	63112918	63113118	+	646.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1249.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	4.85	6.79	9.7	4.42	6.55	8.15	4.98	3.22	8.26	11.05	9.55	9.08
Merged-chr7-19744791-3	chr7	19744688	19744888	+	646.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	4785.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	7.27	9.06	15.4	9.25	8.59	19.44	9.3	3.36	10.03	7.53	8.04	1.88
Merged-chr1-153895170-3	chr1	153895082	153895282	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3536.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	7.27	5.53	10.27	9.65	13.91	7.84	1.0	6.73	11.01	7.53	8.54	10.65
Merged-chr5-74253883-3	chr5	74253799	74253999	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	58573.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.63	7.8	10.27	8.85	6.55	4.7	12.29	5.33	9.64	10.04	12.06	9.08
Merged-chr2-90572253-3	chr2	90572164	90572364	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	8383.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.06	8.8	7.99	2.41	7.36	10.03	2.99	6.0	7.47	12.55	6.03	11.28
Merged-chr4-11192325-3	chr4	11192217	11192417	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282943, intron 1 of 11)	intron (NM_001282943, intron 1 of 11)	608.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	9.29	3.02	3.42	8.04	4.5	6.9	5.31	5.24	10.23	5.52	18.59	10.02
Merged-chr18-24045863-3	chr18	24045741	24045941	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-25028.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	3.23	9.31	1.14	4.83	11.05	5.33	3.99	5.19	7.47	9.04	10.55	5.33
Merged-chr9-50528031-2	chr9	50527924	50528124	+	646.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011220, intron 1 of 5)	intron (NM_011220, intron 1 of 5)	617.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	8.48	6.29	3.42	3.62	6.95	12.54	8.97	6.2	4.92	5.02	11.56	7.83
Merged-chr16-34096001-2	chr16	34095917	34096117	+	646.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-128979.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	10.9	8.05	4.56	4.83	6.95	5.96	3.65	5.33	6.88	14.56	7.03	6.58
Merged-chr9-25559401-2	chr9	25559311	25559511	+	646.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	Lx4B|LINE|L1	77814.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.42	7.55	1.71	1.61	6.14	3.76	6.64	4.57	12.39	9.04	12.56	2.82
Merged-chr16-73964328-2	chr16	73964225	73964425	+	646.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358493, intron 14 of 28)	intron (NM_001358493, intron 14 of 28)	377742.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.4	0.5	1.71	4.02	6.95	7.21	4.65	19.32	9.05	6.53	12.06	9.71
Merged-chr10-39770802-2	chr10	39770678	39770878	+	646.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011264, intron 1 of 31)	B2_Mm1a|SINE|B2	38618.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	8.48	3.52	9.7	8.85	11.45	3.76	2.99	1.29	8.06	11.05	8.04	12.22
Merged-chr13-37482793-3	chr13	37482691	37482891	+	646.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	9.69	5.53	7.99	10.05	6.14	8.47	8.3	15.2	8.65	5.52	9.04	2.19
Merged-chr2-60282103-1	chr2	60282003	60282203	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025422, intron 1 of 4)	B4A|SINE|B4	2381.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	2.42	5.79	5.13	1.21	8.59	8.15	5.98	4.79	3.15	4.02	3.01	4.07
Merged-chr7-100979317-1	chr7	100979217	100979417	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14951.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.81	4.53	3.99	4.02	3.68	2.2	5.98	3.67	6.88	3.51	4.02	2.51
Merged-chr13-113634970-1	chr13	113634870	113635070	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-16406.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	2.02	3.27	4.56	4.83	5.73	0.63	2.33	5.92	3.74	0.5	2.51	0.31
Merged-chr8-26345257-1	chr8	26345157	26345357	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	187088.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	6.46	6.54	1.14	6.44	3.68	6.59	1.66	6.06	3.34	3.51	9.55	6.27
Merged-chr1-43091921-2	chr1	43091832	43092032	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	554.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	2.42	1.51	10.84	3.62	6.55	10.03	13.95	5.27	5.51	10.54	10.55	7.83
Merged-chr17-30215863-1	chr17	30215763	30215963	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	180317.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	6.46	2.77	12.55	8.04	6.14	2.82	11.29	7.93	5.7	5.52	5.02	3.45
Merged-chr15-58383619-1	chr15	58383519	58383719	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027211, intron 1 of 8)	intron (NM_027211, intron 1 of 8)	5655.0	NM_027211	69787.0	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding	7.27	7.04	3.42	0.8	2.05	4.39	1.99	3.31	5.31	5.02	6.03	6.27
Merged-chr4-95008385-1	chr4	95008285	95008485	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29285.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	3.23	0.5	5.13	6.03	4.5	6.9	8.97	5.33	6.69	8.54	7.54	7.52
Merged-chr11-50208230-2	chr11	50208125	50208325	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290769, intron 1 of 7)	intron (NM_001290769, intron 1 of 7)	2595.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	4.04	5.79	3.99	10.05	11.45	7.21	8.3	2.75	6.88	7.53	4.02	4.7
Merged-chr1-138983164-1	chr1	138983064	138983264	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	5507.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	6.86	2.01	1.14	2.82	2.45	2.2	5.31	3.53	9.05	2.51	4.52	4.39
Merged-chr18-20749608-1	chr18	20749508	20749708	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3204.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.81	0.75	2.85	2.41	7.36	1.57	8.3	5.61	6.29	5.02	8.04	5.01
Merged-chr2-170206492-1	chr2	170206392	170206592	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63817.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.23	1.51	2.28	6.03	4.09	8.78	7.31	5.66	3.93	8.03	10.05	10.34
Merged-chr13-41358121-1	chr13	41358021	41358221	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	880.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	1.62	0.0	1.14	6.84	3.27	6.59	1.99	6.0	1.18	1.51	0.5	0.94
Merged-chr8-94485488-1	chr8	94485388	94485588	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033207, intron 11 of 48)	B3A|SINE|B2	12725.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	4.85	8.3	5.7	2.01	7.36	2.82	2.33	3.06	4.13	6.53	8.04	8.14
Merged-chr18-47366454-1	chr18	47366354	47366554	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	CpG	2414.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.23	0.5	2.28	11.66	1.23	7.53	1.33	7.63	1.97	4.52	4.02	1.25
Merged-chr10-69205376-1	chr10	69205276	69205476	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3176.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	2.42	0.5	0.0	1.61	3.27	3.45	2.66	2.05	2.75	1.51	2.51	1.88
Merged-chr4-145361302-2	chr4	145361205	145361405	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-46158.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	7.27	3.77	4.56	0.8	2.86	4.39	0.66	4.63	13.77	12.05	11.05	11.28
Merged-chr16-10970793-3	chr16	10970691	10970891	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	22330.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.08	5.79	9.13	2.82	11.05	15.99	0.0	3.14	7.67	8.03	5.02	4.39
Merged-chr9-37656155-1	chr9	37656055	37656255	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	1157.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	3.23	3.52	0.0	4.83	3.68	4.08	6.31	4.4	4.92	2.01	3.01	3.13
Merged-chr9-94615491-2	chr9	94615401	94615601	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54391.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	1.62	5.03	1.14	15.28	2.86	5.33	6.31	5.3	8.46	6.53	5.53	6.58
Merged-chr18-35652927-1	chr18	35652827	35653027	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	2272.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	5.25	2.52	1.14	2.41	0.82	0.31	2.33	3.48	3.74	3.01	2.51	1.88
Merged-chr8-105534119-1	chr8	105534019	105534219	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	15373.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	5.65	2.52	2.28	4.02	7.36	5.02	1.33	4.99	8.46	3.51	8.54	4.7
Merged-chr9-89200047-1	chr9	89199947	89200147	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	B2_Mm2|SINE|B2	774.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	3.23	3.52	4.56	0.0	3.27	9.09	8.64	1.68	3.34	4.52	3.52	1.88
Merged-chr3-109063241-1	chr3	109063141	109063341	+	646.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17258.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	4.85	3.52	0.0	1.61	2.86	3.14	1.33	5.66	10.82	8.03	10.05	0.0
Merged-chrX-61664211-1	chrX	61664111	61664311	+	646.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45405.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	0.81	5.28	5.7	4.02	3.27	3.45	4.32	5.78	16.13	7.03	8.54	9.08
Merged-chr7-90142359-1	chr7	90142259	90142459	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	12146.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.04	3.27	2.28	2.82	1.64	7.84	2.99	1.74	3.15	2.51	3.01	2.51
Merged-chr17-31664949-3	chr17	31664859	31665059	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6195.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	10.9	8.55	7.42	10.05	14.32	11.6	2.66	5.78	9.64	9.54	9.04	5.01
Merged-chr15-68317125-1	chr15	68317025	68317225	+	646.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20385.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	2.02	5.53	10.84	4.83	4.09	3.76	4.65	8.61	9.64	4.52	10.05	3.45
Merged-chr3-89378986-1	chr3	89378886	89379086	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	8685.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	10.9	3.27	5.7	9.65	13.09	2.2	3.32	10.63	13.57	11.55	13.06	2.19
Merged-chr1-157313649-1	chr1	157313549	157313749	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	A-rich|Low_complexity|Low_complexity	-98703.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	1.21	3.02	1.14	3.22	7.77	3.14	1.33	6.34	13.37	4.52	2.51	2.82
Merged-chr11-114821451-1	chr11	114821351	114821551	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22527.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	1.21	7.29	3.42	1.21	8.59	6.27	3.65	5.69	5.51	5.52	7.03	9.08
Merged-chr11-23565949-1	chr11	23565849	23566049	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7107.0	NR_004857	100134990.0	Mm.247328	NR_004857	ENSMUSG00000085415	Selenok-ps1	Gm12060	selenoprotein K, pseudogene 1	pseudo	5.25	5.53	3.42	4.83	2.45	3.14	2.66	5.02	5.31	5.02	5.02	4.07
Merged-chr6-97357194-1	chr6	97357094	97357294	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	102092.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.42	1.51	1.71	1.21	0.0	2.2	0.66	1.07	0.79	0.5	1.0	0.63
Merged-chr10-86452519-1	chr10	86452419	86452619	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	46377.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	10.9	5.53	4.56	6.44	5.32	7.84	1.99	5.92	7.08	2.01	2.51	4.07
Merged-chr12-11230517-1	chr12	11230417	11230617	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21569.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	2.02	0.5	5.7	4.02	0.0	1.25	6.64	4.32	0.39	1.0	2.51	0.31
Merged-chr9-90227418-1	chr9	90227318	90227518	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_194334, exon 5 of 13)	exon (NM_194334, exon 5 of 13)	43351.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.63	1.76	5.13	1.61	4.91	7.21	2.99	4.99	4.13	6.03	4.02	3.45
Merged-chr2-10372628-1	chr2	10372528	10372728	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177386, intron 1 of 22)	CpG	192.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	4.44	5.28	3.42	6.44	2.45	9.72	2.99	6.14	4.92	1.0	1.0	3.76
Merged-chr10-68916323-1	chr10	68916223	68916423	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	192577.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.04	1.76	5.7	2.41	6.14	10.66	0.66	6.17	5.51	5.02	4.52	5.64
Merged-chr1-123905940-1	chr1	123905840	123906040	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	139619.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.42	4.28	8.56	6.84	4.09	5.96	7.64	5.97	3.15	2.01	6.03	5.01
Merged-chr3-88244324-1	chr3	88244224	88244424	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021375, intron 8 of 9)	intron (NM_021375, intron 8 of 9)	10360.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	7.27	6.79	1.71	10.86	4.91	6.27	3.32	4.4	7.87	6.53	6.53	4.07
Merged-chr13-107782846-1	chr13	107782746	107782946	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	95449.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.02	3.52	4.56	3.62	4.09	4.39	5.65	4.29	2.75	2.01	7.03	3.76
Merged-chr15-35150477-2	chr15	35150360	35150560	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	Lx7|LINE|L1	5346.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	8.08	4.02	5.7	5.63	11.45	5.02	3.32	5.8	9.83	9.04	8.54	0.94
Merged-chr15-67095552-1	chr15	67095452	67095652	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81330.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.62	0.0	3.42	0.8	2.45	1.57	3.99	5.19	0.59	0.5	0.5	0.0
Merged-chr15-95799342-1	chr15	95799242	95799442	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8499.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	2.42	1.01	3.42	2.41	5.73	1.57	3.99	5.55	4.13	4.02	0.0	2.82
Merged-chr15-80060062-1	chr15	80059962	80060162	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	18517.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	2.42	1.01	1.14	2.41	1.64	8.78	1.0	5.24	2.36	1.0	5.02	2.51
Merged-chr13-4759834-1	chr13	4759734	4759934	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-150670.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.63	4.28	2.28	4.02	11.86	4.7	2.99	5.92	3.34	2.01	0.5	3.45
Merged-chr17-37002804-1	chr17	37002704	37002904	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033137)	promoter-TSS (NR_033137)	279.0	NM_001013745	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	6.86	6.29	9.13	5.23	3.27	6.59	3.99	6.36	1.97	13.56	8.04	2.19
Merged-chr2-169008515-1	chr2	169008415	169008615	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30246.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	2.83	1.01	2.28	0.8	8.59	2.82	1.66	6.73	8.26	6.53	7.03	2.19
Merged-chr19-45631142-1	chr19	45631042	45631242	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013907, intron 4 of 8)	intron (NM_013907, intron 4 of 8)	29051.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	2.83	9.81	5.13	10.86	1.64	3.76	1.33	9.31	4.33	0.0	6.03	2.82
Merged-chr14-8081419-1	chr14	8081319	8081519	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025938, intron 1 of 5)	RMER10A|LTR|ERVL	1106.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	5.65	5.28	7.42	6.03	4.91	5.64	3.32	6.95	6.29	5.52	2.51	3.13
Merged-chr18-52457900-1	chr18	52457800	52458000	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7793.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	3.63	1.01	0.0	0.8	4.91	7.53	1.66	4.46	10.23	7.03	8.54	5.33
Merged-chr4-107553892-1	chr4	107553792	107553992	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	119173.0	NM_147221	230587.0	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	8.08	6.29	16.54	12.47	1.23	0.0	1.33	1.91	3.15	5.02	0.5	1.88
Merged-chr2-142889910-1	chr2	142889810	142890010	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	11554.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.65	3.02	4.56	4.83	7.36	2.51	1.33	5.72	3.74	2.51	6.53	2.51
Merged-chr1-85111774-1	chr1	85111674	85111874	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1921.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	2.02	3.27	5.13	3.62	12.27	21.64	8.64	6.5	8.26	6.03	5.02	5.33
Merged-chr14-44052717-1	chr14	44052617	44052817	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46299.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.81	3.27	3.42	0.8	1.64	3.14	12.62	6.98	2.75	1.0	7.54	1.57
Merged-chr4-148169847-1	chr4	148169747	148169947	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9179.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	3.63	10.31	0.0	7.24	10.23	3.76	4.98	6.87	1.97	6.53	3.01	5.33
Merged-chr19-22108695-1	chr19	22108595	22108795	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30422.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	1.62	1.51	2.85	4.02	2.45	0.63	4.98	5.58	3.74	1.51	0.5	0.94
Merged-chr18-63863952-1	chr18	63863852	63864052	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155257.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	3.23	2.01	5.7	0.0	2.86	1.25	5.31	3.62	1.18	1.0	6.53	1.57
Merged-chr1-134961788-2	chr1	134961687	134961887	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-778.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	10.5	7.04	4.56	3.22	4.09	6.27	1.66	4.51	6.69	3.51	3.01	1.25
Merged-chr8-84416254-1	chr8	84416154	84416354	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	890.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.44	5.79	3.42	8.04	3.68	5.96	5.31	4.54	0.0	0.0	0.0	0.0
Merged-chr12-36217139-3	chr12	36217030	36217230	+	645.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	1088.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.04	9.06	3.42	8.04	7.77	7.21	5.31	8.97	7.28	6.03	8.04	7.83
Merged-chr11-62820404-2	chr11	62820350	62820550	+	645.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_053169, exon 1 of 6)	5' UTR (NM_053169, exon 1 of 6)	197.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	4.02	6.28	5.63	4.5	5.96	5.31	6.31	5.31	5.52	6.53	3.13
Merged-chr7-141559788-2	chr7	141559696	141559896	+	645.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	polypyrimidine|Low_complexity|Low_complexity	-2384.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	8.48	3.52	5.13	7.24	5.32	7.84	4.98	5.69	9.44	7.53	6.03	10.34
Merged-chr4-106981624-3	chr4	106981525	106981725	+	645.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	58440.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.83	8.55	8.56	1.61	10.23	9.72	4.98	5.78	10.62	3.01	11.56	2.51
Merged-chr12-111575329-3	chr12	111575239	111575439	+	645.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	829.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	6.86	5.53	6.28	7.64	9.41	4.39	2.66	5.52	10.42	4.52	11.05	3.45
Merged-chr14-70784252-2	chr14	70784143	70784343	+	645.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9862.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	12.52	6.79	5.7	2.01	10.64	12.86	6.64	6.48	5.31	6.53	5.02	7.21
Merged-chr5-135251220-2	chr5	135251117	135251317	+	645.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010246)	promoter-TSS (NM_010246)	-170.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	10.9	11.07	9.13	10.46	11.05	10.03	11.29	4.35	6.1	9.04	10.55	6.58
Merged-chr2-129898337-2	chr2	129898239	129898439	+	645.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-96880.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	12.92	4.53	3.42	11.26	11.45	13.17	8.97	10.12	9.83	8.03	10.05	11.59
Merged-chr17-42480332-1	chr17	42480232	42480432	+	645.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	130981.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	3.23	3.27	3.42	0.0	0.82	0.94	1.33	1.37	9.64	11.05	11.05	14.1
Merged-chrX-71376292-2	chrX	71376193	71376393	+	645.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016985, intron 2 of 14)	intron (NM_016985, intron 2 of 14)	11533.0	NM_001313706	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	7.27	5.53	10.27	8.85	6.95	5.96	3.99	7.23	7.87	3.51	3.52	8.46
Merged-chr9-22962521-3	chr9	22962426	22962626	+	645.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-260550.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.63	8.05	13.12	13.27	6.14	5.33	5.98	18.67	8.46	7.03	9.55	5.33
Merged-chr9-115740204-1	chr9	115740104	115740304	+	645.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169251.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.0	4.78	0.0	1.61	0.0	0.94	0.33	0.0	8.85	10.54	21.61	6.89
Merged-chr8-70759235-3	chr8	70759151	70759351	+	645.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009001)	TTS (NM_009001)	1670.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	7.27	6.29	1.14	7.64	8.18	10.03	2.33	5.89	13.96	7.53	10.05	4.7
Merged-chr5-95925667-1	chr5	95925567	95925767	+	645.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31272.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.81	0.75	0.57	4.42	5.32	7.53	4.65	5.8	2.75	1.0	3.52	1.88
Merged-chr17-63875638-1	chr17	63875538	63875738	+	645.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	MLTR31FA_MM|LTR|ERVK	-2428.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.5	4.56	0.0	11.86	3.45	6.31	4.46	4.52	4.02	4.52	7.21
Merged-chr16-14477765-3	chr16	14477642	14477842	+	645.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84575.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	8.88	5.28	9.13	12.07	3.27	6.27	5.65	7.26	11.8	7.03	7.03	8.77
Merged-chr7-102016307-3	chr7	102016211	102016411	+	645.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010531, exon 5 of 7)	exon (NM_010531, exon 5 of 7)	1844.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.83	2.77	3.99	2.41	5.32	11.29	2.99	7.12	9.64	12.55	8.54	11.9
Merged-chr7-100474855-2	chr7	100474721	100474921	+	645.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1830.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.85	4.78	1.14	10.46	4.91	3.45	8.3	5.47	4.72	10.04	10.05	2.19
Merged-chr4-97777278-2	chr4	97777178	97777378	+	645.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-348.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	8.08	9.31	2.28	4.02	5.73	4.08	8.97	8.1	11.8	6.53	7.03	4.07
Merged-chr14-122476030-2	chr14	122475922	122476122	+	645.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045046)	promoter-TSS (NR_045046)	638.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	6.46	5.03	1.14	4.42	12.27	5.64	4.65	5.33	10.62	3.01	16.58	5.33
Merged-chr19-55235744-2	chr19	55235593	55235793	+	645.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5543.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	3.23	1.26	7.99	7.64	7.77	4.39	10.63	4.4	4.33	6.03	3.52	1.25
Merged-chr13-52283611-2	chr13	52283486	52283686	+	645.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186845.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.85	2.52	2.28	6.03	2.86	7.53	1.66	5.27	6.69	5.52	13.57	7.21
Merged-chr1-43939494-3	chr1	43939392	43939592	+	645.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	5498.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	8.08	8.3	12.55	6.84	17.18	12.86	11.96	11.24	8.65	10.54	6.53	4.39
Merged-chr15-53585337-3	chr15	53585227	53585427	+	645.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	28952.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	6.86	7.29	5.13	8.85	5.73	6.59	4.65	6.62	8.46	7.53	15.58	10.02
Merged-chr13-30696521-1	chr13	30696421	30696621	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	36462.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.65	5.03	4.56	4.83	9.41	7.21	2.99	4.46	12.59	3.51	6.53	4.7
Merged-chr13-19691031-1	chr13	19690931	19691131	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167909, intron 5 of 14)	intron (NM_001167909, intron 5 of 14)	6729.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	1.62	8.05	11.41	7.64	1.23	4.39	1.66	6.17	7.28	0.5	2.51	2.82
Merged-chr1-136605504-1	chr1	136605404	136605604	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19397.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	1.51	2.28	0.0	9.41	14.11	4.98	4.74	2.36	1.51	6.03	3.76
Merged-chr3-75298020-1	chr3	75297920	75298120	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27942.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	8.48	4.02	8.56	6.03	11.45	3.76	4.32	4.68	3.74	3.01	3.52	2.19
Merged-chr11-115709351-2	chr11	115709221	115709421	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-724.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.85	9.56	5.7	0.8	4.09	3.14	4.98	3.17	6.1	8.54	11.56	6.58
Merged-chr9-61020169-1	chr9	61020069	61020269	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040767)	TTS (NR_040767)	3100.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	2.42	7.55	4.56	4.83	5.32	9.41	5.31	5.02	15.74	6.03	4.52	8.46
Merged-chr3-89183134-2	chr3	89183025	89183225	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-18.0	NM_001355760	68521.0	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	5.25	7.29	4.56	12.87	4.09	7.53	1.99	4.71	4.92	10.54	4.02	7.52
Merged-chr9-111052733-2	chr9	111052630	111052830	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4514.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.65	6.04	0.0	0.0	2.05	3.14	0.0	1.04	0.59	0.0	0.5	0.63
Merged-chr17-43407668-1	chr17	43407568	43407768	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357332, intron 2 of 20)	intron (NM_001357332, intron 2 of 20)	18202.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.0	0.5	0.0	2.41	7.36	6.59	2.33	4.01	3.34	1.0	5.02	1.57
Merged-chr2-150914298-1	chr2	150914198	150914398	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027014, intron 2 of 6)	L2b|LINE|L2	4704.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	3.23	1.76	2.85	2.41	4.5	2.82	5.31	2.75	4.92	4.52	2.01	5.01
Merged-chr11-46675924-1	chr11	46675824	46676024	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161355, intron 8 of 8)	intron (NM_001161355, intron 8 of 8)	14433.0	NM_001161356	171284.0	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	35.94	47.29	27.95	29.36	14.32	15.99	12.95	10.01	0.2	1.0	0.0	0.94
Merged-chr6-124661340-2	chr6	124661252	124661452	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	5.25	4.53	4.56	2.41	7.77	5.64	5.31	5.5	6.49	13.05	13.06	7.83
Merged-chr15-25567374-1	chr15	25567274	25567474	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-55176.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	8.08	7.8	5.7	7.64	5.73	3.45	2.99	1.88	2.75	6.03	5.02	0.63
Merged-chr7-92666847-2	chr7	92666800	92667000	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	3012.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	2.83	3.77	7.99	3.62	4.09	4.39	0.0	0.79	6.29	2.01	1.0	6.58
Merged-chr18-11700985-3	chr18	11700892	11701092	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	43643.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	7.67	6.29	14.26	10.05	2.45	3.14	4.65	5.72	10.62	12.55	3.01	6.27
Merged-chr11-59545238-3	chr11	59545106	59545306	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 2 of 9)	B3|SINE|B2	2520.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.46	7.04	14.26	4.02	9.0	3.14	0.0	4.74	9.44	8.54	5.02	6.58
Merged-chr9-90056629-2	chr9	90056520	90056720	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	2353.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.86	9.31	3.42	8.04	1.64	6.9	4.98	1.65	15.74	13.05	7.03	8.46
Merged-chr12-84803249-2	chr12	84803159	84803359	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	MTC|LTR|ERVL-MaLR	29989.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	9.29	8.8	11.41	3.22	9.41	18.19	4.98	1.91	8.06	11.05	8.04	3.45
Merged-chr3-96098342-2	chr3	96098253	96098453	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6174.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	5.65	5.28	9.13	4.83	9.82	4.39	2.66	5.89	10.82	10.54	7.54	0.94
Merged-chr9-40686325-1	chr9	40686225	40686425	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_133733, exon 1 of 7)	5' UTR (NM_133733, exon 1 of 7)	361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.46	2.01	3.99	12.47	4.5	7.53	5.65	3.64	0.98	1.0	1.51	3.13
Merged-chr13-119754875-1	chr13	119754775	119754975	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1007.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	5.25	2.77	3.99	5.23	6.55	5.02	1.66	6.87	5.11	5.02	5.02	9.4
Merged-chr17-78248585-3	chr17	78248470	78248670	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48322.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	2.02	1.76	0.0	0.8	3.27	1.88	0.66	3.22	3.93	3.01	4.52	4.07
Merged-chr5-23415982-3	chr5	23415909	23416109	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18344.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.65	11.32	2.28	8.04	8.18	6.27	3.65	6.81	9.64	11.05	15.07	6.89
Merged-chr13-34871659-1	chr13	34871559	34871759	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	4.85	1.26	2.85	1.21	2.86	7.21	4.65	4.26	1.18	0.0	1.51	6.58
Merged-chr9-65588044-2	chr9	65587926	65588126	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357526, exon 2 of 13)	exon (NM_001357526, exon 2 of 13)	866.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	9.69	3.77	12.55	10.46	2.86	6.9	2.33	6.7	5.9	7.03	6.53	13.78
Merged-chr17-36257796-3	chr17	36257721	36257921	+	645.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026308)	promoter-TSS (NM_026308)	25.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	3.63	9.31	3.99	8.45	3.27	6.9	6.31	5.16	9.44	10.04	19.6	8.77
Merged-chr5-139505273-3	chr5	139505173	139505373	+	645.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18478.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	8.08	5.03	1.71	3.22	6.55	10.66	0.66	4.63	12.39	19.08	15.07	7.83
Merged-chr2-156475524-3	chr2	156475452	156475652	+	645.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001006664)	promoter-TSS (NM_001006664)	18.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.85	4.02	7.42	10.05	13.91	11.6	6.31	6.87	7.28	11.05	5.53	5.64
Merged-chr9-13559018-2	chr9	13558931	13559131	+	645.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60958.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.85	7.29	0.0	4.42	9.82	9.41	3.99	7.57	9.44	8.54	10.55	4.7
Merged-chr9-88547384-2	chr9	88547282	88547482	+	645.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-638.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	6.06	4.53	5.13	18.1	9.0	7.21	5.98	7.68	10.42	3.51	8.54	7.52
Merged-chr16-36711005-2	chr16	36710902	36711102	+	645.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	B3A|SINE|B2	17024.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.46	8.8	0.57	15.28	5.32	12.86	2.99	3.56	12.78	16.07	14.07	7.52
Merged-chr19-34254610-2	chr19	34254517	34254717	+	645.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007392, intron 1 of 8)	intron (NM_007392, intron 1 of 8)	756.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	4.85	3.52	5.13	3.62	14.32	7.53	11.63	5.72	9.83	7.53	23.62	8.77
Merged-chr11-67657874-2	chr11	67657779	67657979	+	645.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 5 of 13)	intron (NM_001109657, intron 5 of 13)	-37447.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	8.08	11.32	2.85	3.22	0.82	9.72	3.65	2.21	14.55	14.06	11.56	5.95
Merged-chr15-76009418-1	chr15	76009318	76009518	+	645.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	80.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	7.67	2.52	5.7	1.21	6.55	7.53	5.98	5.36	5.7	6.53	4.52	3.76
Merged-chr10-75593329-1	chr10	75593229	75593429	+	645.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359425, intron 1 of 7)	AT_rich|Low_complexity|Low_complexity	3948.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	3.23	0.75	2.85	4.42	4.91	6.59	5.31	1.93	3.15	3.01	6.53	1.25
Merged-chr5-34372724-3	chr5	34372624	34372824	+	645.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2791.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	7.27	8.55	7.99	1.21	11.86	15.37	8.64	6.08	15.14	15.06	11.56	7.21
Merged-chr10-127059985-3	chr10	127059908	127060108	+	645.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033262, exon 1 of 4)	5' UTR (NM_001033262, exon 1 of 4)	176.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	5.25	7.29	10.27	9.25	6.55	5.33	1.0	4.09	4.33	8.54	8.54	7.21
Merged-chr10-85351237-1	chr10	85351137	85351337	+	645.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-35577.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.0	9.64	11.05	10.05	11.28
Merged-chr1-130716903-4	chr1	130716727	130716927	+	645.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178691)	promoter-TSS (NM_178691)	-500.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	5.25	4.78	11.41	4.42	3.27	10.03	11.96	5.36	3.93	9.54	4.52	4.7
Merged-chr18-62122083-2	chr18	62121991	62122191	+	645.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME3A|LINE|L1	57890.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.65	10.56	9.13	1.61	9.0	6.59	4.65	5.21	6.29	6.03	11.05	9.4
Merged-chr17-45430566-3	chr17	45430462	45430662	+	645.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152810, intron 1 of 15)	L1_Mus1|LINE|L1	3145.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	7.67	6.54	14.83	8.85	7.36	15.05	2.66	4.71	8.85	3.51	11.56	5.64
Merged-chr14-73403557-1	chr14	73403457	73403657	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18268.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.85	3.77	11.98	4.02	7.77	6.59	5.98	7.37	4.72	3.51	23.11	6.58
Merged-chr17-65681129-1	chr17	65681029	65681229	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133685, intron 5 of 6)	(GGA)n|Simple_repeat|Simple_repeat	-38925.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.25	2.01	2.85	5.23	10.23	6.59	3.32	4.88	4.13	3.01	5.02	6.27
Merged-chr1-136608567-1	chr1	136608467	136608667	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16334.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	1.21	1.01	0.0	2.41	1.64	1.25	5.65	7.77	2.95	5.02	1.51	0.63
Merged-chr17-87152759-1	chr17	87152659	87152859	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42183.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	5.25	2.52	10.84	4.42	6.14	2.82	2.33	5.83	5.11	5.02	17.08	7.83
Merged-chr19-41329020-1	chr19	41328920	41329120	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 4 of 16)	intron (NM_031376, intron 4 of 16)	56050.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.06	3.02	2.28	6.44	10.64	2.51	6.98	5.24	8.06	4.52	11.56	3.13
Merged-chr1-106632139-1	chr1	106632039	106632239	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	82151.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	4.04	5.03	5.7	1.61	4.91	6.9	1.66	4.79	5.7	2.01	4.52	1.88
Merged-chr16-94565565-1	chr16	94565465	94565665	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4641.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.06	5.03	3.42	0.0	1.64	6.27	3.32	5.3	4.52	8.54	2.01	4.39
Merged-chr11-75541836-1	chr11	75541736	75541936	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	-9593.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	2.42	2.52	1.14	0.4	9.82	9.72	3.99	6.25	4.13	3.01	1.0	1.88
Merged-chr7-4148769-1	chr7	4148669	4148869	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172736)	TTS (NM_172736)	1103.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	3.23	6.04	11.98	10.05	2.45	3.76	3.65	6.62	8.46	9.04	11.05	8.14
Merged-chr7-81261761-1	chr7	81261661	81261861	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	47957.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	2.52	3.42	0.8	4.91	7.21	2.33	5.02	3.15	2.01	8.04	0.31
Merged-chr17-15535999-2	chr17	15535962	15536162	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8761.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	2.42	2.01	7.99	5.23	11.05	8.15	2.33	7.77	6.1	6.53	4.52	2.82
Merged-chr8-86585811-1	chr8	86585711	86585911	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19221.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	6.86	2.77	3.99	4.42	3.68	2.2	7.97	5.38	5.11	1.51	3.52	0.31
Merged-chr1-180885884-1	chr1	180885784	180885984	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7224.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	5.65	1.26	5.7	4.42	5.32	3.76	2.99	7.07	4.52	4.52	2.51	3.13
Merged-chr4-3771526-1	chr4	3771426	3771626	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	(TGGA)n|Simple_repeat|Simple_repeat	56562.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	4.44	1.76	2.85	1.61	1.64	5.02	2.33	3.31	8.85	6.03	5.53	7.21
Merged-chr15-63652694-1	chr15	63652594	63652794	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	156045.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	3.23	1.76	2.28	5.63	5.73	10.03	4.32	3.79	5.11	13.56	8.54	5.01
Merged-chr12-84763813-1	chr12	84763713	84763913	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	9299.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.25	3.02	4.56	0.4	0.82	0.63	0.0	2.02	5.51	4.02	2.01	2.82
Merged-chr3-81264854-1	chr3	81264754	81264954	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	228438.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.62	1.26	1.14	0.0	6.14	3.76	9.63	7.09	1.38	3.51	0.5	2.19
Merged-chr14-65359104-1	chr14	65359004	65359204	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	CpG	428.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	7.27	11.57	7.42	6.44	2.86	4.08	3.65	3.84	6.49	5.52	4.02	8.46
Merged-chr5-18038452-1	chr5	18038352	18038552	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75882.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	1.01	7.99	2.41	4.91	5.64	1.33	7.07	8.46	4.52	13.06	2.82
Merged-chr2-121572000-1	chr2	121571900	121572100	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360084, intron 6 of 13)	intron (NM_001360084, intron 6 of 13)	65277.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	5.65	5.28	5.13	6.03	1.64	7.84	1.33	4.07	4.13	1.0	5.53	1.88
Merged-chr5-136253099-2	chr5	136252961	136253161	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291238, intron 18 of 22)	intron (NM_001291238, intron 18 of 22)	-8121.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	4.04	8.05	6.85	6.84	7.36	7.53	1.33	3.59	5.31	4.52	7.03	9.4
Merged-chr10-111576163-1	chr10	111576063	111576263	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18110.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	5.65	0.75	4.56	1.61	5.32	3.76	7.31	5.58	6.69	8.54	5.53	4.07
Merged-chr8-83067085-2	chr8	83066986	83067186	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-98266.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.42	3.02	1.71	7.24	10.64	1.25	5.65	5.07	7.28	10.04	3.52	6.58
Merged-chr6-99188655-1	chr6	99188555	99188755	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	77860.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.85	4.28	2.28	0.4	8.59	18.81	6.98	5.47	11.8	2.51	4.02	3.76
Merged-chr3-89214883-1	chr3	89214783	89214983	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-297.0	NM_013691	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	3.63	5.79	0.0	3.22	9.0	6.9	3.99	5.47	9.83	5.02	8.04	5.64
Merged-chr2-13237805-1	chr2	13237705	13237905	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009105, intron 3 of 8)	intron (NM_009105, intron 3 of 8)	33610.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	5.25	8.55	2.85	1.61	4.09	6.27	3.65	6.03	7.28	1.51	4.52	4.07
Merged-chr14-46153097-1	chr14	46152997	46153197	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69070.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	1.62	0.75	7.42	4.02	4.91	2.2	4.98	5.5	0.98	0.0	0.0	0.0
Merged-chr12-76580846-1	chr12	76580746	76580946	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-32921.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	1.62	3.27	1.14	11.26	1.64	2.2	9.63	5.38	0.59	4.02	11.56	5.01
Merged-chr19-41347545-1	chr19	41347445	41347645	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	37525.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.85	4.53	5.7	3.22	4.5	3.76	6.31	5.13	9.24	6.03	7.03	2.19
Merged-chr3-95065761-1	chr3	95065661	95065861	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293707, intron 10 of 14)	intron (NM_001293707, intron 10 of 14)	-23147.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	4.85	3.52	9.13	4.42	3.27	5.96	3.65	5.41	8.06	3.51	7.03	4.39
Merged-chr6-115511791-1	chr6	115511691	115511891	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32913.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.23	2.01	4.56	1.21	4.5	2.82	1.66	6.62	6.29	5.52	2.01	2.82
Merged-chr16-57535822-1	chr16	57535722	57535922	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-13420.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.46	2.52	2.85	5.63	2.45	4.39	3.99	5.44	3.34	1.0	3.01	5.33
Merged-chr11-57791323-2	chr11	57791229	57791429	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10138.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	6.06	3.52	0.0	3.62	9.41	8.15	5.98	6.14	3.93	6.03	11.05	6.58
Merged-chr17-29045177-2	chr17	29045072	29045272	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12512.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	22.21	6.79	13.12	9.65	7.36	11.92	4.65	3.64	14.55	6.53	7.03	3.13
Merged-chr9-96712906-1	chr9	96712806	96713006	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	ID_B1|SINE|B4	6539.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	2.02	0.0	4.56	2.41	3.27	3.45	7.31	3.79	4.52	3.51	0.5	0.31
Merged-chr4-141267984-2	chr4	141267872	141268072	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10467.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	8.48	5.79	5.7	1.61	4.91	3.45	3.65	4.18	11.21	15.06	6.03	6.27
Merged-chr1-88266461-1	chr1	88266361	88266561	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198652, exon 8 of 8)	exon (NM_198652, exon 8 of 8)	2947.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	4.04	5.28	2.28	1.61	1.64	4.08	5.31	2.94	1.97	1.0	4.02	7.52
Merged-chr11-3195385-1	chr11	3195285	3195485	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1922.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	10.5	6.29	2.28	7.64	4.09	5.33	5.98	3.03	9.05	6.03	8.04	11.9
Merged-chr5-140391013-1	chr5	140390913	140391113	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-1705.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	1.21	2.26	0.0	8.04	2.45	7.84	4.32	3.56	1.38	1.0	3.52	3.13
Merged-chr14-47375208-2	chr14	47375136	47375336	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145953, intron 1 of 5)	ORR1A2|LTR|ERVL-MaLR	1376.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.65	2.01	0.0	5.63	2.05	5.64	11.29	3.28	7.87	5.52	6.03	10.65
Merged-chr3-152333955-1	chr3	152333855	152334055	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162375, intron 3 of 13)	intron (NM_001162375, intron 3 of 13)	6452.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	2.02	2.52	7.99	14.08	2.05	5.96	2.33	8.58	0.98	0.5	1.0	0.0
Merged-chr15-64098633-1	chr15	64098533	64098733	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-38185.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.02	3.52	0.57	3.62	6.95	4.39	3.99	1.82	10.62	5.52	10.55	6.27
Merged-chr6-28832462-1	chr6	28832362	28832562	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138682)	promoter-TSS (NM_138682)	-715.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	7.67	1.76	1.71	4.02	3.27	3.45	5.65	5.55	2.95	5.02	5.02	3.13
Merged-chr9-74988241-1	chr9	74988141	74988341	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	12130.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	1.62	0.5	1.71	1.21	6.95	2.82	3.32	7.99	7.47	3.51	11.05	4.39
Merged-chr7-45572111-1	chr7	45572011	45572211	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243052, intron 1 of 10)	intron (NM_001243052, intron 1 of 10)	832.0	NM_001243052	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	2.42	2.01	5.13	7.24	2.45	6.27	1.33	5.33	4.72	5.02	3.01	5.33
Merged-chr3-95053892-2	chr3	95053809	95054009	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-11295.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	5.65	11.82	0.0	0.4	6.14	6.27	8.64	5.5	9.24	10.04	6.53	7.21
Merged-chr11-102190249-1	chr11	102190149	102190349	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	550.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	4.85	5.03	4.56	2.82	5.73	6.59	1.99	3.39	7.47	2.01	5.53	5.95
Merged-chr9-57504475-1	chr9	57504375	57504575	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133982, exon 1 of 1)	exon (NM_133982, exon 1 of 1)	373.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	10.09	5.28	2.85	5.63	8.18	10.66	3.32	6.25	6.29	8.54	6.53	7.83
Merged-chr18-12940501-2	chr18	12940401	12940601	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	1340.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	8.88	8.3	3.99	3.62	4.09	5.96	1.99	11.33	10.03	5.02	4.52	7.21
Merged-chr5-143626378-2	chr5	143626249	143626449	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3902.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	9.29	6.04	4.56	8.04	2.86	7.84	1.66	5.13	8.65	5.52	3.52	5.64
Merged-chr11-118237144-1	chr11	118237044	118237244	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11448.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.83	3.27	3.99	8.45	5.73	4.7	4.32	6.39	4.13	9.54	7.03	8.14
Merged-chr11-50108261-1	chr11	50108161	50108361	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23099.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	9.29	1.51	5.13	4.42	4.5	3.76	3.99	7.12	8.85	4.52	11.05	5.33
Merged-chr17-83665003-1	chr17	83664903	83665103	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-33108.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.65	6.29	10.27	6.84	0.41	0.63	0.66	0.0	1.18	2.51	3.52	0.94
Merged-chr5-66141700-1	chr5	66141600	66141800	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	RMER15|LTR|ERVL	9278.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.23	4.78	3.42	3.22	4.09	8.15	4.65	5.55	0.98	0.5	0.5	0.94
Merged-chr13-104286508-1	chr13	104286408	104286608	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1327.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	10.5	2.01	7.42	4.83	7.36	3.76	3.65	8.55	3.74	5.02	9.04	5.33
Merged-chr2-21117354-1	chr2	21117254	21117454	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88011.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	1.76	2.28	4.83	6.14	3.14	5.65	6.48	0.79	2.01	4.02	3.76
Merged-chr5-92467620-1	chr5	92467520	92467720	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	9063.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	3.23	3.02	3.42	2.41	9.82	14.11	8.64	6.28	8.26	10.54	3.52	11.28
Merged-chr1-194984281-1	chr1	194984181	194984381	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7322.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	1.62	1.51	1.71	2.41	4.09	2.2	6.98	5.94	2.36	1.51	13.06	1.25
Merged-chr6-53064308-3	chr6	53064197	53064397	+	644.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	4327.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	9.29	5.79	11.41	9.25	8.18	12.54	6.98	16.57	8.85	5.02	19.09	8.14
Merged-chr7-126399696-3	chr7	126399599	126399799	+	644.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2962.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	12.52	8.3	10.84	7.24	4.91	3.76	4.98	3.93	15.93	6.53	5.02	6.89
Merged-chr17-68172957-2	chr17	68172873	68173073	+	644.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100824.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	6.06	8.8	10.27	7.64	5.32	10.03	5.65	5.69	2.56	5.02	6.03	4.7
Merged-chr9-61369582-2	chr9	61369491	61369691	+	644.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2775.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	10.9	3.77	7.99	4.02	6.95	8.47	2.66	4.99	9.83	4.52	3.52	3.13
Merged-chr8-70505092-3	chr8	70504992	70505192	+	644.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151646, intron 2 of 3)	intron (NR_151646, intron 2 of 3)	1334.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	3.23	5.03	0.0	6.84	7.36	6.27	2.99	4.23	16.33	11.55	6.53	12.84
Merged-chr9-44493075-3	chr9	44492960	44493160	+	644.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	-6076.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	3.23	11.32	10.27	10.86	7.77	3.76	4.32	8.3	13.18	6.03	8.04	11.28
Merged-chr2-62638817-2	chr2	62638715	62638915	+	644.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027835, intron 2 of 15)	Lx9|LINE|L1	7440.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	5.65	5.28	3.42	1.61	3.68	5.02	3.99	6.31	12.98	12.05	10.05	6.27
Merged-chr13-74292366-2	chr13	74292269	74292469	+	644.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009644)	promoter-TSS (NM_009644)	-38.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	4.44	9.06	10.84	5.23	10.23	12.54	8.64	5.75	11.01	5.02	16.08	3.13
Merged-chr11-90247991-2	chr11	90247878	90248078	+	644.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1498.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	2.83	4.53	11.98	2.41	6.14	6.27	1.99	5.41	13.18	5.52	11.05	4.7
Merged-chr7-135889502-1	chr7	135889402	135889602	+	644.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-173123.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.06	7.29	5.13	2.01	6.95	7.84	10.63	6.45	6.1	9.54	4.52	3.76
Merged-chr17-87314739-3	chr17	87314637	87314837	+	644.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	31851.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.04	8.3	12.55	5.63	5.73	7.21	8.64	4.51	7.87	6.53	8.04	5.64
Merged-chr16-30262896-2	chr16	30262813	30263013	+	644.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027904, intron 1 of 1)	intron (NM_027904, intron 1 of 1)	4619.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	5.65	7.04	6.85	10.46	2.05	21.64	1.99	3.22	10.82	11.05	13.57	7.21
Merged-chr2-102946222-1	chr2	102946122	102946322	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.85	3.52	7.99	1.61	5.73	10.03	2.99	6.2	7.08	5.02	7.03	4.39
Merged-chr13-32902746-2	chr13	32902641	32902841	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-4601.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	9.29	8.55	5.13	7.24	11.05	2.2	3.65	7.32	5.11	5.52	6.53	6.89
Merged-chr6-57749374-1	chr6	57749274	57749474	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	46919.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	8.48	5.53	2.85	4.42	6.14	6.59	1.99	4.26	8.65	14.06	7.54	2.82
Merged-chr16-92416655-2	chr16	92416538	92416738	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-16560.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.83	8.55	9.7	4.83	1.23	6.59	5.31	7.51	8.06	5.52	6.03	3.13
Merged-chr16-64850928-2	chr16	64850830	64851030	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	793.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	2.83	6.29	3.99	0.0	5.73	4.7	10.63	4.12	11.41	4.52	7.54	2.82
Merged-chr3-103927669-1	chr3	103927569	103927769	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	13549.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	8.08	3.77	0.0	8.85	3.68	10.35	9.63	5.64	3.93	5.02	2.51	3.13
Merged-chr16-13755114-1	chr16	13755014	13755214	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001357954, exon 1 of 1)	exon (NM_001357954, exon 1 of 1)	550.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	10.09	8.55	7.99	7.64	5.73	8.78	3.99	5.33	4.33	8.03	4.52	6.27
Merged-chr9-66877226-1	chr9	66877126	66877326	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42479.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.67	7.04	8.56	9.65	6.95	5.96	4.32	5.78	4.72	13.56	3.52	4.39
Merged-chr9-122285458-2	chr9	122285353	122285553	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271873, intron 1 of 12)	(G)n|Simple_repeat|Simple_repeat	8970.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	2.83	5.28	7.99	4.83	7.77	7.21	2.99	9.62	6.69	2.01	11.56	3.13
Merged-chr11-74532569-2	chr11	74532474	74532674	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	57584.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	10.5	6.79	6.28	8.45	4.91	6.59	5.98	6.22	6.49	0.5	6.03	10.65
Merged-chr10-8762195-2	chr10	8762060	8762260	+	644.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123910.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.44	3.27	1.71	2.82	3.68	13.17	5.98	2.41	6.49	9.54	5.53	3.45
Merged-chr10-70195935-2	chr10	70195843	70196043	+	644.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-8721.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	2.42	7.55	1.14	2.01	3.27	4.39	5.31	4.29	12.78	8.54	18.59	7.21
Merged-chr6-136989985-2	chr6	136989882	136990082	+	644.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35459.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	9.29	2.77	3.99	6.03	11.45	6.9	6.98	6.2	8.06	14.06	12.56	3.76
Merged-chr9-44799459-2	chr9	44799384	44799584	+	644.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-237.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	4.04	5.28	6.85	2.01	8.18	3.45	3.65	3.59	6.1	4.02	7.54	4.07
Merged-chr2-92529494-1	chr2	92529394	92529594	+	644.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-62712.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	8.88	8.55	7.99	11.26	4.91	4.39	2.66	6.56	3.34	2.51	4.02	5.95
Merged-chr2-128363409-1	chr2	128363309	128363509	+	644.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	65942.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.62	2.01	3.99	0.0	6.14	6.9	2.66	6.42	1.97	3.51	7.03	3.76
Merged-chrX-169987461-1	chrX	169987361	169987561	+	644.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 8 of 9)	CpG	-8544.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	1.01	0.0	0.0	0.0	0.0	0.0	0.0	9.24	10.54	6.53	6.89
Merged-chr10-78043579-3	chr10	78043470	78043670	+	644.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271549)	promoter-TSS (NM_001271549)	40.0	NM_001271552	11634.0	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	4.85	4.53	1.71	9.25	6.14	8.47	3.32	7.68	14.75	9.04	9.55	7.52
Merged-chr7-45590007-2	chr7	45589884	45590084	+	644.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009737)	TTS (NM_009737)	-14808.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	3.23	5.79	5.13	3.22	5.73	3.14	1.33	4.77	11.8	12.05	8.04	7.21
Merged-chr9-122950420-2	chr9	122950307	122950507	+	644.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	593.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	4.85	1.26	5.7	3.22	4.09	10.35	0.66	4.63	11.8	5.52	8.04	5.95
Merged-chr16-23611176-1	chr16	23611076	23611276	+	644.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	1257.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	2.02	5.03	8.56	4.83	5.73	7.53	3.99	6.06	8.26	5.52	3.52	4.39
Merged-chr6-97971584-3	chr6	97971477	97971677	+	644.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001178049, intron 2 of 9)	intron (NM_001178049, intron 2 of 9)	-20206.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	8.88	8.05	7.42	5.23	12.27	13.48	6.98	12.25	7.28	10.04	8.54	4.39
Merged-chr12-110844706-3	chr12	110844661	110844861	+	644.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152102)	TTS (NR_152102)	3732.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	7.67	6.79	11.41	6.84	6.55	13.17	4.98	3.67	12.39	5.02	9.04	4.7
Merged-chr10-70281210-1	chr10	70281110	70281310	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025807, intron 4 of 5)	MIRb|SINE|MIR	35934.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.81	1.01	6.85	4.02	4.91	1.88	4.98	4.91	2.75	2.01	4.52	7.21
Merged-chr17-36992929-1	chr17	36992829	36993029	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	9.29	3.27	5.7	6.44	4.91	1.25	7.31	6.56	8.26	3.51	4.52	3.76
Merged-chr16-22263011-1	chr16	22262911	22263111	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	2994.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	1.62	2.01	2.28	0.8	2.86	0.94	0.66	1.93	0.79	2.51	2.51	1.57
Merged-chr4-132617414-1	chr4	132617314	132617514	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21632.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.83	2.77	3.99	1.61	5.73	5.02	1.33	5.61	4.52	4.52	2.51	5.64
Merged-chr15-50841913-1	chr15	50841813	50842013	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47136.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.08	3.52	2.28	4.02	6.95	5.64	4.65	7.35	15.74	4.02	7.54	4.39
Merged-chr2-91508210-2	chr2	91508077	91508277	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 36 of 37)	MLT1F2|LTR|ERVL-MaLR	-18585.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.04	3.02	0.57	4.02	3.27	4.08	4.32	3.25	6.29	9.04	10.05	6.89
Merged-chr1-107228041-1	chr1	107227941	107228141	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	50330.0	NM_201363	381286.0	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding	3.23	1.76	10.84	11.26	4.09	3.76	5.31	7.37	1.18	5.02	2.01	2.51
Merged-chr2-76255111-1	chr2	76255011	76255211	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	83542.0	NM_001081033	241489.0	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	7.27	4.53	1.14	4.02	4.5	6.9	3.99	5.47	4.92	6.03	6.53	2.19
Merged-chr3-88654859-1	chr3	88654759	88654959	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1717.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	8.88	2.52	6.85	0.0	15.55	6.59	3.99	4.04	2.56	7.03	4.52	4.39
Merged-chr2-114249332-1	chr2	114249232	114249432	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47900.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.0	0.25	1.14	2.41	1.23	2.51	6.98	8.13	0.59	4.52	2.51	1.25
Merged-chr18-43393573-1	chr18	43393473	43393673	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009468)	promoter-TSS (NM_009468)	-196.0	NM_009468	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	4.04	8.55	1.14	2.01	5.32	3.45	4.65	5.41	5.51	7.03	10.05	3.13
Merged-chr15-97790235-3	chr15	97790110	97790310	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 2 of 2)	intron (NM_026353, intron 2 of 2)	5845.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	9.69	5.53	2.85	2.82	6.14	10.03	3.65	5.61	8.26	3.51	13.06	2.19
Merged-chr9-88548394-1	chr9	88548294	88548494	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	374.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	3.23	6.79	5.7	2.01	4.09	5.02	4.32	3.98	3.93	3.01	13.06	6.89
Merged-chr16-13117425-1	chr16	13117325	13117525	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015769, intron 2 of 10)	intron (NM_015769, intron 2 of 10)	7689.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	14.13	11.57	7.42	7.24	3.27	3.76	2.66	7.88	8.46	12.05	6.53	5.01
Merged-chrX-102050748-1	chrX	102050648	102050848	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	20559.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	1.62	1.76	7.42	2.41	6.14	5.64	5.31	8.21	1.97	2.01	1.0	2.19
Merged-chr4-42946125-1	chr4	42946025	42946225	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3742.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	3.23	5.28	2.28	2.41	2.05	13.48	3.65	5.19	1.57	6.53	8.04	6.27
Merged-chr1-137927081-2	chr1	137926976	137927176	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39379.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.5	2.28	0.0	6.95	10.98	4.65	9.25	9.05	5.52	8.04	6.89
Merged-chr6-124304686-1	chr6	124304586	124304786	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053094)	promoter-TSS (NM_053094)	35.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.04	3.02	3.42	1.61	6.55	5.33	2.33	5.24	1.77	2.51	3.01	2.19
Merged-chr9-114723544-2	chr9	114723434	114723634	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146229, exon 13 of 13)	3' UTR (NM_146229, exon 13 of 13)	-7669.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	9.69	4.28	3.99	4.02	10.64	6.27	5.98	5.72	5.9	12.05	5.02	7.52
Merged-chr15-103484314-1	chr15	103484214	103484414	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 22 of 30)	intron (NM_153505, intron 22 of 30)	-18720.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	6.86	4.02	7.99	3.22	3.27	2.51	8.64	9.56	7.28	6.53	5.53	6.27
Merged-chr8-36745023-1	chr8	36744923	36745123	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-11969.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.81	3.02	0.0	6.84	2.45	7.53	3.99	5.13	5.9	0.5	2.01	5.64
Merged-chr10-80701615-1	chr10	80701515	80701715	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	205.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	9.69	8.8	7.99	5.23	9.82	10.35	3.99	6.93	11.6	15.06	8.04	13.47
Merged-chr19-16371892-1	chr19	16371792	16371992	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	MLTR11A|LTR|ERVK	-56888.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	2.83	5.53	5.7	4.83	7.36	4.39	7.64	4.29	3.74	3.01	3.01	8.77
Merged-chr9-74425807-1	chr9	74425707	74425907	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	315473.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	4.85	3.77	2.28	11.26	3.27	5.02	1.66	8.16	4.33	7.03	14.57	4.39
Merged-chr7-67051310-1	chr7	67051210	67051410	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033877, intron 14 of 22)	intron (NM_001033877, intron 14 of 22)	171148.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	3.23	3.27	2.28	0.8	2.86	3.45	4.65	6.31	0.59	2.01	1.0	1.57
Merged-chr8-11312675-1	chr8	11312575	11312775	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009932)	promoter-TSS (NM_009932)	-130.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	7.27	1.51	0.0	3.22	2.05	2.82	7.31	6.5	2.16	1.0	3.52	1.25
Merged-chr17-34285621-1	chr17	34285521	34285721	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2150.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.04	2.01	1.71	4.42	2.45	5.96	0.66	0.08	12.19	2.01	3.52	6.58
Merged-chr5-150375391-1	chr5	150375291	150375491	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172887, intron 14 of 60)	intron (NM_172887, intron 14 of 60)	115461.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.02	2.52	1.71	2.82	0.0	4.7	5.31	5.69	2.36	2.01	9.04	2.82
Merged-chr16-17703883-2	chr16	17703786	17703986	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19014.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	8.08	7.04	9.13	13.67	9.82	9.72	4.32	9.31	7.87	6.53	17.08	5.33
Merged-chr1-184502731-1	chr1	184502631	184502831	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54960.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	2.42	5.03	7.99	18.5	5.73	8.15	2.99	5.3	10.62	3.51	5.02	4.7
Merged-chr10-122600987-1	chr10	122600887	122601087	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31096.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	1.62	7.04	4.56	0.8	7.77	9.41	1.66	1.99	4.52	2.01	6.53	3.45
Merged-chr17-35094932-1	chr17	35094832	35095032	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178592, intron 5 of 19)	MIR|SINE|MIR	5641.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	6.46	3.02	3.42	4.83	6.55	4.7	1.33	7.51	16.72	8.54	6.53	2.82
Merged-chr18-30447757-1	chr18	30447657	30447857	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174892.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	2.83	1.51	0.0	0.8	1.23	0.31	6.64	3.95	6.69	10.04	8.54	1.88
Merged-chr9-87022630-2	chr9	87022512	87022712	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	583.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	6.06	6.79	6.28	7.64	6.95	7.53	3.99	3.64	11.21	8.54	10.55	11.28
Merged-chr13-112926983-1	chr13	112926883	112927083	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	397.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	5.65	7.55	10.27	2.41	0.0	3.14	3.99	3.59	5.31	5.02	2.51	8.14
Merged-chr2-72474290-2	chr2	72474213	72474413	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	5.25	6.04	6.28	12.47	5.32	5.33	2.99	6.48	11.01	4.02	4.52	3.13
Merged-chr18-80296141-1	chr18	80296041	80296241	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001190373, exon 4 of 4)	exon (NM_001190373, exon 4 of 4)	39835.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	7.27	7.55	6.28	3.62	1.23	1.25	1.99	5.64	7.28	3.01	6.53	5.33
Merged-chr2-118011052-2	chr2	118010966	118011166	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100136.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.81	4.02	14.83	2.41	6.55	10.35	8.97	8.38	11.8	7.03	10.05	6.89
Merged-chr4-8648420-2	chr4	8648316	8648516	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41990.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.04	6.29	2.85	12.87	11.05	5.64	5.31	3.31	9.83	5.52	6.53	7.83
Merged-chrY-1253116-1	chrY	1253016	1253216	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-7357.0	NM_009484	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	1.62	1.01	2.28	6.03	5.32	6.59	0.66	5.47	2.56	3.01	4.02	6.27
Merged-chr10-40259112-1	chr10	40259012	40259212	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	6.46	6.29	11.98	6.44	11.86	7.84	0.66	5.27	10.03	7.03	4.02	2.82
Merged-chr6-50109526-1	chr6	50109426	50109626	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-715.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.23	2.26	1.71	4.42	4.09	5.02	3.65	4.07	3.54	2.01	4.02	8.77
Merged-chr2-11547827-1	chr2	11547727	11547927	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6102.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	12.92	6.04	0.57	4.83	4.91	8.78	3.32	2.61	8.85	11.05	11.56	6.58
Merged-chr4-19952198-1	chr4	19952098	19952298	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29632.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.25	6.79	3.99	7.64	9.82	1.88	3.65	6.17	13.77	4.52	3.52	3.76
Merged-chr10-80142919-1	chr10	80142819	80143019	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	604.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	4.85	3.52	2.28	0.8	1.64	5.02	3.65	5.58	2.16	0.5	5.53	4.7
Merged-chr11-101449126-1	chr11	101449026	101449226	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027320, intron 1 of 6)	RLTR12E|LTR|ERVK	714.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	6.46	12.83	2.28	2.01	4.09	5.02	2.66	5.66	5.11	10.04	6.03	2.51
Merged-chr8-36867734-2	chr8	36867616	36867816	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84726.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.42	3.02	3.42	3.62	0.82	4.39	1.99	2.61	7.08	3.51	9.04	5.01
Merged-chr19-16701969-1	chr19	16701869	16702069	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173028, intron 31 of 71)	intron (NM_173028, intron 31 of 71)	78964.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	1.62	2.52	5.7	2.41	7.77	3.14	2.66	3.42	3.93	3.51	2.51	4.39
Merged-chr13-4279417-1	chr13	4279317	4279517	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013777)	promoter-TSS (NM_013777)	-18.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.0	2.26	3.99	0.8	0.0	1.25	1.99	0.34	7.67	10.54	14.07	6.89
Merged-chr2-45205901-1	chr2	45205801	45206001	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88459.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.42	1.01	0.0	0.8	6.55	3.14	2.99	6.14	0.2	1.0	0.0	0.0
Merged-chr17-72927170-3	chr17	72927071	72927271	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	8866.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	16.56	7.55	4.56	6.44	5.73	7.84	3.32	8.41	7.67	2.01	8.04	6.58
Merged-chr7-121035499-1	chr7	121035399	121035599	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021554, intron 1 of 4)	intron (NM_021554, intron 1 of 4)	1054.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	4.85	7.8	4.56	5.63	10.23	6.59	1.99	5.47	8.46	6.03	6.53	5.01
Merged-chr4-3510554-1	chr4	3510454	3510654	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-26536.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	21.0	19.37	19.4	18.1	9.0	7.21	8.64	5.36	12.0	11.55	11.05	7.21
Merged-chr8-83185572-1	chr8	83185472	83185672	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	20220.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.42	5.79	7.99	3.22	9.0	10.66	7.64	5.24	0.98	0.0	2.01	1.25
Merged-chr12-99447961-1	chr12	99447861	99448061	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	2113.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.81	0.5	2.28	3.22	1.64	8.47	1.66	5.61	2.16	1.51	5.02	0.94
Merged-chr1-156424045-1	chr1	156423945	156424145	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3130.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	1.21	3.77	3.42	2.41	2.86	1.88	1.0	1.82	1.38	4.02	1.51	1.88
Merged-chr9-107626931-1	chr9	107626831	107627031	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8411.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	2.42	3.27	1.71	0.8	2.86	4.7	2.66	2.33	12.39	10.04	9.55	7.83
Merged-chr4-123019085-1	chr4	123018985	123019185	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151450, intron 1 of 9)	Lx8|LINE|L1	2492.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	6.86	3.27	5.13	2.82	9.41	5.02	0.33	6.42	5.31	5.02	0.5	5.33
Merged-chr6-71272505-2	chr6	71272380	71272580	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106192)	TTS (NR_106192)	461.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	2.83	5.03	5.7	5.23	3.68	7.53	9.63	5.75	12.98	7.03	13.06	6.89
Merged-chr19-46459453-1	chr19	46459353	46459553	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-42195.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.81	0.75	1.14	0.8	8.59	4.08	2.99	6.08	3.54	1.51	2.01	0.63
Merged-chr12-54640600-1	chr12	54640500	54640700	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5412.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	3.23	1.51	3.42	2.41	1.64	2.82	4.65	3.34	8.85	7.53	6.53	5.95
Merged-chr15-58273140-3	chr15	58273042	58273242	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51027.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	2.42	6.04	9.7	6.84	6.55	4.7	8.64	8.05	7.08	9.04	15.07	9.08
Merged-chr2-127341768-1	chr2	127341668	127341868	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291003, intron 1 of 8)	intron (NM_001291003, intron 1 of 8)	132.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	7.27	6.29	0.0	1.61	3.27	5.96	1.33	0.76	4.92	9.54	0.0	2.51
Merged-chr2-27547522-1	chr2	27547422	27547622	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	32375.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	5.65	7.8	7.99	12.07	0.82	1.88	2.33	1.74	5.7	1.0	3.01	3.13
Merged-chr5-113006365-1	chr5	113006265	113006465	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	9173.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.65	8.8	3.99	1.21	2.05	1.25	1.33	0.81	1.97	0.0	0.5	0.31
Merged-chr9-55377860-1	chr9	55377760	55377960	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 2 of 10)	intron (NM_172923, intron 2 of 10)	50947.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	2.42	2.77	0.0	5.63	0.82	3.76	3.65	4.46	0.79	0.0	0.0	1.25
Merged-chr10-44752326-1	chr10	44752226	44752426	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-293578.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	2.77	1.14	1.21	4.09	6.27	0.0	6.42	8.46	5.02	5.02	9.08
Merged-chr18-39453013-1	chr18	39452913	39453113	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	34232.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.21	0.25	0.0	4.02	8.18	3.14	2.33	5.83	1.38	0.5	7.54	3.76
Merged-chr1-80759852-2	chr1	80759756	80759956	+	643.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1303.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	1.62	6.79	3.42	2.41	3.68	8.78	8.3	6.62	9.24	18.08	4.02	4.07
Merged-chr2-124605539-2	chr2	124605423	124605623	+	643.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4773.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.08	2.52	5.7	3.62	11.05	5.96	3.99	5.13	11.6	10.54	14.57	9.4
Merged-chr4-133671328-3	chr4	133671219	133671419	+	643.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	1328.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	8.48	5.53	5.13	5.23	2.86	4.08	0.0	5.97	8.26	7.03	3.01	6.58
Merged-chr9-73116931-2	chr9	73116836	73117036	+	643.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198609, intron 3 of 5)	(T)n|Simple_repeat|Simple_repeat	3467.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	9.69	11.32	5.13	8.85	9.0	3.14	0.0	2.44	14.36	10.54	11.05	9.08
Merged-chr4-128680645-3	chr4	128680495	128680695	+	643.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-8143.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.86	2.52	4.56	4.42	10.64	6.59	4.65	6.7	6.49	7.03	6.53	6.27
Merged-chr1-37867275-2	chr1	37867159	37867359	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1961.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	4.44	3.02	3.42	1.61	8.59	16.62	1.33	6.64	11.41	17.57	17.59	5.01
Merged-chr15-85867841-2	chr15	85867750	85867950	+	643.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013882, intron 5 of 10)	intron (NM_013882, intron 5 of 10)	7904.0	NM_013882	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	8.08	7.29	9.13	2.41	10.23	7.21	11.29	6.59	4.72	3.51	11.05	3.76
Merged-chr15-84133712-2	chr15	84133593	84133793	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10518.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	1.62	4.02	2.28	8.45	1.64	6.9	5.98	5.52	4.13	5.02	14.07	6.27
Merged-chr6-125433888-2	chr6	125433785	125433985	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53381.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	2.52	0.0	0.8	1.64	6.27	7.64	5.02	4.92	9.04	10.55	9.08
Merged-chr7-30860035-1	chr7	30859935	30860135	+	643.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_194057)	TTS (NM_194057)	1435.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	2.02	3.52	1.14	2.41	0.82	3.45	1.33	1.35	12.59	22.59	11.05	8.46
Merged-chr15-102459622-1	chr15	102459522	102459722	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025385, intron 2 of 4)	intron (NM_025385, intron 2 of 4)	452.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	12.92	4.53	3.42	4.42	6.14	13.48	6.31	6.2	3.34	3.51	3.52	5.33
Merged-chr10-71362628-1	chr10	71362528	71362728	+	643.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14865.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.65	3.77	1.14	1.61	6.55	7.21	6.98	5.27	5.9	6.53	5.53	3.13
Merged-chr7-145090252-2	chr7	145090152	145090352	+	643.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117867.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.65	5.79	6.28	7.24	7.36	8.47	6.64	4.99	10.62	9.04	14.07	8.46
Merged-chr4-124843636-1	chr4	124843536	124843736	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008636, intron 10 of 10)	intron (NM_008636, intron 10 of 10)	6928.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	6.86	4.02	5.7	8.04	6.14	5.33	6.64	5.16	4.33	5.52	9.04	3.13
Merged-chr15-89404675-2	chr15	89404581	89404781	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162880, intron 1 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	5582.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	16.15	7.55	9.7	6.84	4.91	5.33	5.31	5.64	5.51	2.01	8.04	5.95
Merged-chr7-99680909-2	chr7	99680799	99680999	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	14910.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	8.48	7.04	12.55	6.84	4.91	5.64	5.65	15.34	0.98	1.51	1.51	3.76
Merged-chr19-32911484-2	chr19	32911385	32911585	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	153908.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.06	2.52	4.56	2.41	6.55	6.9	5.98	6.64	9.05	7.53	3.01	11.59
Merged-chr18-75218980-1	chr18	75218880	75219080	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 14 of 16)	L1MC5a|LINE|L1	78337.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.44	5.53	3.42	4.83	5.32	5.64	5.31	5.69	0.39	5.52	2.01	5.33
Merged-chr2-130631359-2	chr2	130631273	130631473	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	13.33	4.02	2.28	0.0	11.86	23.2	3.32	6.5	9.64	6.03	7.03	5.95
Merged-chr6-146272491-1	chr6	146272391	146272591	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	229732.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.44	8.8	7.42	3.62	8.18	4.7	7.64	5.69	6.88	3.01	8.04	1.88
Merged-chr5-67778219-2	chr5	67778131	67778331	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284345, intron 7 of 36)	intron (NM_001284345, intron 7 of 36)	69200.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.06	5.53	7.42	6.03	2.45	4.7	4.32	4.07	10.42	6.03	12.56	3.45
Merged-chr15-83205342-2	chr15	83205255	83205455	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33147.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	6.06	6.54	15.97	7.64	5.73	4.7	3.65	3.81	10.42	4.52	7.54	8.14
Merged-chr13-114831583-1	chr13	114831483	114831683	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13346.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	6.06	6.04	6.28	9.25	2.86	4.08	5.65	4.4	6.88	2.51	5.02	2.82
Merged-chr9-22457555-1	chr9	22457455	22457655	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018739, intron 2 of 5)	intron (NM_018739, intron 2 of 5)	10801.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	2.02	6.79	9.13	7.64	3.27	5.96	8.3	4.4	6.88	11.05	13.06	5.64
Merged-chr12-25294654-1	chr12	25294554	25294754	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	165480.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.81	2.52	6.85	4.42	11.45	4.7	5.31	6.11	0.79	0.0	0.0	1.57
Merged-chr7-100780473-2	chr7	100780371	100780571	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	73836.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	6.86	8.05	2.28	12.47	4.91	4.7	4.65	9.0	6.49	5.02	8.54	4.07
Merged-chrX-75096614-1	chrX	75096514	75096714	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001359413, exon 2 of 16)	5' UTR (NM_001359413, exon 2 of 16)	760.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	6.86	7.04	1.71	4.02	5.32	5.96	3.65	6.98	1.57	4.52	8.04	2.19
Merged-chr5-46347564-2	chr5	46347472	46347672	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-415163.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	5.25	7.55	5.7	6.44	4.91	4.7	4.65	7.37	8.65	6.03	7.03	6.58
Merged-chr19-38043912-2	chr19	38043799	38043999	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	-322.0	NM_001302140	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	7.67	7.8	4.56	3.22	5.73	10.03	5.65	3.56	14.55	10.04	6.03	5.95
Merged-chr7-128705877-3	chr7	128705747	128705947	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 11 of 15)	intron (NM_145955, intron 11 of 15)	16977.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	8.88	6.79	11.98	0.4	4.09	5.96	0.66	6.62	7.28	2.51	3.01	6.58
Merged-chr2-153445003-2	chr2	153444919	153445119	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-540.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	6.06	7.04	2.28	3.22	15.14	5.33	4.98	6.93	6.88	9.04	2.51	7.83
Merged-chr8-11602231-2	chr8	11602137	11602337	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32799.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	8.48	7.29	14.83	2.01	6.95	5.33	4.98	7.6	4.52	8.03	5.02	6.27
Merged-chr7-100608438-2	chr7	100608341	100608541	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153424)	promoter-TSS (NR_153424)	-140.0	NR_003559	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	7.67	8.05	5.13	5.63	9.82	6.27	8.64	4.99	8.65	16.57	11.05	6.89
Merged-chr12-118772975-3	chr12	118772883	118773083	+	643.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	-73346.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	11.31	6.54	11.41	6.44	8.59	9.41	10.3	6.98	8.65	1.51	12.06	6.58
Merged-chr1-149833143-3	chr1	149833049	149833249	+	643.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	89290.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	8.88	9.56	10.84	12.87	5.73	7.53	5.98	8.52	16.13	13.56	22.61	10.34
Merged-chr4-145295812-2	chr4	145295704	145295904	+	643.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	19343.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	4.85	2.26	9.13	7.64	8.59	11.92	2.33	3.5	11.6	12.55	15.07	7.83
Merged-chr1-172412455-2	chr1	172412347	172412547	+	643.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35916.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	8.88	4.28	1.71	7.24	7.77	4.7	3.65	5.5	8.85	4.52	7.03	8.77
Merged-chr14-13354347-2	chr14	13354248	13354448	+	643.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	69568.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	3.63	8.3	1.71	2.01	6.55	7.84	2.99	9.14	6.29	10.54	8.04	6.89
Merged-chr11-70289480-2	chr11	70289375	70289575	+	643.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33055.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	11.71	8.05	10.84	6.44	10.64	5.96	2.99	6.25	10.23	7.53	7.54	1.25
Merged-chr16-10522976-1	chr16	10522876	10523076	+	643.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007575, intron 15 of 18)	B3|SINE|B2	20078.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	2.02	2.77	5.7	4.02	4.5	6.27	4.98	6.53	5.7	14.06	3.52	3.13
Merged-chr6-6005001-1	chr6	6004901	6005101	+	643.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010063, intron 14 of 16)	intron (NM_010063, intron 14 of 16)	-27608.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	3.23	4.78	3.42	3.22	6.95	8.15	9.63	6.67	2.75	3.51	5.02	4.39
Merged-chr17-74853860-1	chr17	74853760	74853960	+	643.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 16 of 19)	intron (NM_152817, intron 16 of 19)	136110.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	2.83	5.28	6.85	2.41	6.55	4.08	2.33	9.11	9.64	6.03	20.6	8.14
Merged-chr1-65195700-1	chr1	65195600	65195800	+	643.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011086, exon 5 of 42)	exon (NM_011086, exon 5 of 42)	9015.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	4.85	5.28	6.85	4.02	7.36	8.15	7.64	5.92	3.93	4.52	15.07	0.94
Merged-chr18-34866133-1	chr18	34866033	34866233	+	643.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4926.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.04	6.04	5.7	3.22	5.73	9.72	0.66	1.99	10.42	13.56	7.03	4.07
Merged-chr6-84026372-3	chr6	84026258	84026458	+	643.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	MTEb|LTR|ERVL-MaLR	6972.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	7.67	11.07	7.99	8.45	13.09	10.66	2.99	8.58	9.44	9.04	6.03	7.21
Merged-chr19-61224008-2	chr19	61223911	61224111	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009970)	TTS (NM_009970)	4407.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	3.23	1.51	3.42	2.82	3.68	2.2	4.98	3.17	3.74	6.03	3.52	1.88
Merged-chr11-89008999-2	chr11	89008814	89009014	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	9511.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.42	2.01	1.14	0.0	4.5	2.51	0.33	0.0	2.95	1.51	3.01	1.88
Merged-chr2-181241106-2	chr2	181241014	181241214	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183162, intron 1 of 18)	intron (NM_183162, intron 1 of 18)	913.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	1.62	3.27	1.71	2.41	4.5	2.82	2.33	3.17	9.05	13.05	9.55	6.89
Merged-chr3-79286246-2	chr3	79286146	79286346	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59130.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	6.06	6.04	3.99	6.84	9.0	3.76	11.29	4.46	8.46	8.54	7.54	4.07
Merged-chr19-53648913-3	chr19	53648808	53649008	+	643.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28398.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	9.69	10.06	7.99	6.03	6.95	7.21	3.32	6.06	9.44	9.54	10.05	5.95
Merged-chr1-53909294-3	chr1	53909167	53909367	+	643.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 13 of 28)	intron (NM_001001883, intron 13 of 28)	59843.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.44	8.05	2.85	6.84	13.5	7.21	2.99	6.28	9.64	5.02	11.05	5.01
Merged-chr13-70038483-1	chr13	70038383	70038583	+	643.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-10135.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	0.0	0.0	0.0	1.61	0.0	0.0	0.33	0.36	10.42	11.55	18.59	9.4
Merged-chr10-41839092-2	chr10	41839009	41839209	+	643.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	28535.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.65	11.82	4.56	9.25	10.64	13.48	7.64	5.19	5.7	1.0	3.01	1.57
Merged-chr11-76622790-2	chr11	76622685	76622885	+	643.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45046.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.88	3.52	2.28	4.83	5.32	7.84	7.31	3.17	7.67	7.03	10.55	4.7
Merged-chr6-39068832-3	chr6	39068741	39068941	+	643.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	-1255.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	8.08	6.54	11.41	9.65	11.45	5.33	7.64	10.09	4.13	8.54	7.03	7.52
Merged-chr5-140755684-1	chr5	140755584	140755784	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	31557.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.83	0.0	1.14	2.41	1.23	0.63	4.98	3.53	0.59	0.0	0.5	0.31
Merged-chr7-135641962-1	chr7	135641862	135642062	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-9937.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	1.21	3.02	1.14	1.21	2.45	0.63	7.31	5.27	5.51	2.51	4.02	2.82
Merged-chr13-113608467-1	chr13	113608367	113608567	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10097.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.44	6.04	2.85	0.0	5.32	8.47	0.66	2.41	4.72	15.06	0.5	0.31
Merged-chr18-39461778-1	chr18	39461678	39461878	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	25467.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.06	1.76	4.56	3.62	3.27	5.64	2.99	4.77	6.1	5.52	6.03	3.76
Merged-chr6-89340858-1	chr6	89340758	89340958	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008881, intron 8 of 31)	intron (NM_008881, intron 8 of 31)	21755.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.04	5.79	6.28	3.22	6.14	5.96	1.99	7.09	4.13	5.52	3.52	5.01
Merged-chr2-170329310-1	chr2	170329210	170329410	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-27051.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.65	1.76	3.42	5.63	4.91	5.33	1.99	5.02	7.87	8.03	7.54	3.13
Merged-chr7-99500407-1	chr7	99500307	99500507	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16698.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	6.46	6.04	7.99	8.04	9.0	5.96	4.65	3.11	6.69	13.05	10.05	9.08
Merged-chr9-66909429-1	chr9	66909329	66909529	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	10276.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.25	2.26	3.42	3.22	2.86	9.09	1.33	5.16	2.36	4.02	6.53	4.7
Merged-chr3-22190694-1	chr3	22190594	22190794	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 5 of 15)	intron (NM_030732, intron 5 of 15)	-60676.0	NR_004439	19784.0		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	2.02	4.28	4.56	6.03	3.68	1.25	4.32	8.94	7.08	7.03	7.54	5.64
Merged-chr11-32268134-1	chr11	32268034	32268234	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	-427.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0.81	1.76	3.99	5.23	10.64	2.82	5.65	5.92	0.39	6.53	2.51	5.33
Merged-chr9-110624616-1	chr9	110624516	110624716	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-223.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	6.06	1.76	0.0	2.82	5.73	6.9	1.33	6.25	3.93	3.51	3.52	3.45
Merged-chr4-150515699-1	chr4	150515599	150515799	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	136475.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.42	0.0	1.14	1.61	6.14	1.88	2.66	6.28	2.36	0.0	2.51	0.94
Merged-chr2-49745175-1	chr2	49745075	49745275	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42511.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	4.44	1.01	10.27	4.02	4.91	2.51	4.32	4.6	8.65	6.53	4.52	5.64
Merged-chr3-116133521-1	chr3	116133421	116133621	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3833.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.63	2.52	3.99	4.02	3.68	5.64	1.99	6.93	2.75	1.0	10.05	3.13
Merged-chr8-111545580-1	chr8	111545480	111545680	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	7237.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	2.42	2.26	0.0	0.8	6.95	8.15	0.0	5.52	3.74	0.5	2.01	2.82
Merged-chr9-108564423-1	chr9	108564323	108564523	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011830, intron 9 of 13)	intron (NM_011830, intron 9 of 13)	2919.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	2.83	1.76	0.57	0.0	4.91	3.76	1.99	0.67	1.38	8.03	0.0	1.88
Merged-chr17-87110296-1	chr17	87110196	87110396	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019654, intron 1 of 2)	intron (NM_019654, intron 1 of 2)	2617.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	2.02	3.52	1.14	4.42	0.82	4.39	0.0	4.51	2.75	1.51	11.05	2.82
Merged-chr2-128241094-1	chr2	128240994	128241194	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113519.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.63	2.01	3.42	0.0	10.64	17.56	9.3	3.53	2.95	8.54	4.52	3.13
Merged-chr2-167842568-3	chr2	167842457	167842657	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89770.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.46	6.54	14.83	5.63	8.59	5.64	6.31	10.15	8.06	3.01	10.55	11.59
Merged-chr17-10312183-1	chr17	10312083	10312283	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	7178.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	5.25	5.53	2.28	0.0	1.64	4.7	5.31	5.02	7.67	5.02	5.02	6.58
Merged-chr6-128145999-1	chr6	128145899	128146099	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2421.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	2.42	2.26	4.56	0.8	2.05	4.39	6.31	5.02	4.52	4.02	3.01	5.64
Merged-chr14-55900249-2	chr14	55900145	55900345	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001082975)	promoter-TSS (NM_001082975)	-13.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	2.42	3.02	13.69	10.46	9.0	9.09	5.65	4.49	0.98	4.02	5.53	5.95
Merged-chr17-34313005-1	chr17	34312905	34313105	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	MTC|LTR|ERVL-MaLR	7138.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.85	9.06	9.13	2.41	3.68	2.51	2.99	1.54	12.98	7.03	4.52	6.89
Merged-chr12-76586128-1	chr12	76586028	76586228	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013675, intron 33 of 35)	intron (NM_013675, intron 33 of 35)	-38203.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	1.62	2.52	1.14	4.42	2.45	2.51	0.66	4.18	1.77	2.51	1.51	1.25
Merged-chr19-28337662-1	chr19	28337562	28337762	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 6 of 10)	intron (NM_175459, intron 6 of 10)	-326496.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	2.83	1.26	1.14	0.0	6.14	7.53	5.65	4.49	0.79	4.02	0.0	1.88
Merged-chr2-61454577-1	chr2	61454477	61454677	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124009.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.86	4.02	0.57	3.62	4.09	1.25	6.31	4.74	7.87	2.51	2.01	3.13
Merged-chr6-98232943-1	chr6	98232843	98233043	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	109811.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	13.73	6.54	5.7	6.84	5.32	5.64	4.98	7.57	4.33	5.52	2.01	6.58
Merged-chr10-51492793-1	chr10	51492693	51492893	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291894, intron 4 of 8)	intron (NM_001291894, intron 4 of 8)	1895.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.46	7.04	10.27	4.42	3.68	4.39	7.31	5.61	3.93	4.02	2.51	5.64
Merged-chr1-191186589-1	chr1	191186489	191186689	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3256.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	5.25	1.76	7.99	5.63	2.86	4.39	1.99	5.75	6.88	2.51	6.03	7.83
Merged-chr15-96736849-1	chr15	96736749	96736949	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37121.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.83	1.51	2.28	2.41	2.05	1.57	3.65	6.53	7.28	9.54	5.02	2.19
Merged-chrX-133936780-1	chrX	133936680	133936880	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001290718, exon 14 of 14)	3' UTR (NM_001290718, exon 14 of 14)	28355.0	NM_001083895	68792.0	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	5.65	10.56	14.26	0.8	2.45	0.0	0.33	0.98	3.74	2.01	5.02	0.94
Merged-chr7-101615731-1	chr7	101615631	101615831	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34570.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	2.02	3.52	7.99	1.61	2.86	7.21	3.65	4.04	9.24	6.03	9.55	2.51
Merged-chr6-137724059-2	chr6	137723967	137724167	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11015.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	8.88	4.53	3.42	3.62	10.23	6.27	3.32	10.68	10.82	7.03	8.54	6.58
Merged-chr6-24961504-1	chr6	24961404	24961604	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-5379.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	2.83	1.76	0.0	0.0	2.45	2.51	4.65	5.1	5.11	5.02	1.51	0.94
Merged-chr2-32581628-1	chr2	32581528	32581728	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198191, intron 9 of 9)	intron (NM_198191, intron 9 of 9)	-5450.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	2.42	4.02	12.55	3.22	6.55	11.92	1.66	5.8	7.08	1.51	6.53	6.58
Merged-chr1-45819599-1	chr1	45819499	45819699	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028599, exon 17 of 21)	exon (NM_028599, exon 17 of 21)	24433.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.04	2.26	2.85	5.23	6.55	2.51	2.99	6.56	5.11	2.51	5.53	3.76
Merged-chr17-36915218-1	chr17	36915118	36915318	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8574.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	1.62	0.0	1.71	2.41	4.09	8.47	3.65	5.27	1.97	2.51	3.52	4.39
Merged-chr8-128552144-1	chr8	128552044	128552244	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133510.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	2.02	5.53	9.13	0.4	3.68	6.59	1.33	4.49	0.79	1.51	0.5	2.82
Merged-chr13-37721635-1	chr13	37721535	37721735	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104403.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.62	9.06	5.13	1.21	4.09	8.78	1.99	6.95	2.75	5.02	6.53	4.07
Merged-chr1-144343462-1	chr1	144343362	144343562	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94358.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.23	0.0	6.85	1.61	2.05	1.25	4.98	5.92	2.16	4.52	2.01	4.39
Merged-chr11-20331615-2	chr11	20331502	20331702	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	1111.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	7.67	1.76	2.28	6.84	2.45	2.51	4.32	6.22	7.67	1.51	6.53	7.21
Merged-chr13-58568843-1	chr13	58568743	58568943	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022317, intron 11 of 17)	intron (NM_022317, intron 11 of 17)	42034.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	8.48	8.55	5.13	4.02	1.64	2.51	2.66	2.16	4.52	7.03	3.01	5.33
Merged-chr7-46882180-2	chr7	46882077	46882277	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20914.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	6.06	7.04	9.7	13.67	3.68	4.7	1.99	6.9	9.24	5.52	5.53	8.46
Merged-chr2-165062662-1	chr2	165062562	165062762	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_170704, exon 3 of 9)	exon (NM_170704, exon 3 of 9)	7026.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	8.08	5.28	3.42	0.8	7.36	7.53	0.0	3.03	15.74	3.51	10.05	2.51
Merged-chr1-4768518-3	chr1	4768419	4768619	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17207.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	6.06	9.06	2.28	10.46	9.0	7.21	8.3	4.12	9.44	11.05	7.03	8.14
Merged-chr12-83582239-1	chr12	83582139	83582339	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359167, intron 3 of 12)	intron (NM_001359167, intron 3 of 12)	14983.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	4.44	12.32	2.28	2.41	4.5	9.09	5.31	4.68	4.33	6.03	4.02	4.7
Merged-chr15-101113945-2	chr15	101113820	101114020	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1835.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	4.85	8.55	7.99	6.84	11.45	9.09	1.33	4.12	8.65	2.01	5.02	2.51
Merged-chr8-71469695-2	chr8	71469595	71469795	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294259, intron 1 of 3)	CpG	501.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.0	5.28	11.41	11.66	2.05	5.96	8.3	5.61	10.03	3.01	5.02	12.22
Merged-chr13-110062920-1	chr13	110062820	110063020	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360099, intron 4 of 4)	intron (NM_001360099, intron 4 of 4)	159111.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	5.65	2.26	2.85	3.62	7.36	5.96	3.65	7.51	3.54	2.51	5.02	5.33
Merged-chr2-163858698-1	chr2	163858598	163858798	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001030292, exon 2 of 2)	exon (NM_001030292, exon 2 of 2)	4948.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	4.04	1.26	0.0	3.22	8.18	4.08	0.0	6.53	6.88	6.03	5.53	4.07
Merged-chr1-180919867-1	chr1	180919767	180919967	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15155.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	3.63	1.76	2.28	0.0	12.68	3.76	5.98	4.21	5.31	11.05	13.57	3.13
Merged-chr15-99688997-1	chr15	99688897	99689097	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009597, intron 3 of 11)	intron (NM_009597, intron 3 of 11)	-3227.0	NM_001289791	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	2.83	4.53	1.14	0.4	3.27	0.63	2.33	4.37	9.44	4.02	3.01	9.08
Merged-chr11-95426699-1	chr11	95426599	95426799	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	B4A|SINE|B4	12616.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.75	1.14	2.41	9.41	4.08	0.66	6.31	2.36	2.51	2.01	4.07
Merged-chr7-64140567-2	chr7	64140476	64140676	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-13259.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	2.42	1.01	2.28	0.0	8.18	4.7	1.99	4.49	11.8	11.05	3.52	2.82
Merged-chr5-9187925-1	chr5	9187825	9188025	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-26149.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.4	3.77	5.13	0.8	6.14	1.57	0.0	4.91	5.9	1.0	5.53	4.07
Merged-chr2-130476889-1	chr2	130476789	130476989	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	RMER10A|LTR|ERVL	26611.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.62	5.03	6.85	2.41	6.14	3.76	0.0	5.78	0.59	1.0	2.01	1.88
Merged-chr2-145825854-1	chr2	145825754	145825954	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	ID_B1|SINE|B4	39738.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	8.88	5.53	1.71	12.07	8.59	7.21	5.65	6.9	8.46	7.03	13.06	12.53
Merged-chr13-107023013-1	chr13	107022913	107023113	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	443.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.04	4.78	7.99	8.04	4.91	3.76	5.65	7.63	6.88	9.04	5.02	9.4
Merged-chr13-43266540-2	chr13	43266428	43266628	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033399, intron 1 of 1)	L1_Mur3|LINE|L1	37644.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	10.5	6.54	9.7	8.45	0.0	4.08	4.65	7.07	2.75	0.5	6.53	0.31
Merged-chr7-25765892-1	chr7	25765792	25765992	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-11133.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	2.42	3.27	2.28	2.82	2.86	1.57	5.31	5.61	5.31	0.0	2.01	7.21
Merged-chr9-21412393-1	chr9	21412293	21412493	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	556.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	8.88	8.55	9.13	7.24	5.32	5.96	7.97	4.79	6.49	8.54	2.01	8.77
Merged-chr1-16220465-1	chr1	16220365	16220565	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114583.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	1.21	0.0	0.0	0.0	0.82	0.94	3.65	2.07	2.95	2.51	4.52	1.88
Merged-chr9-13575124-3	chr9	13574995	13575195	+	642.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-44894.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.06	4.78	9.13	7.64	10.23	12.54	4.98	7.09	5.51	4.02	12.56	6.89
Merged-chr6-13665875-2	chr6	13665788	13665988	+	642.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	12078.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	2.42	1.51	6.28	5.63	7.36	8.47	6.31	9.17	6.69	3.01	8.54	8.77
Merged-chr19-32770091-2	chr19	32769993	32770193	+	642.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	12516.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.48	8.8	4.56	0.8	10.64	7.53	7.31	5.13	7.87	6.03	3.52	1.88
Merged-chr11-44355076-2	chr11	44354992	44355192	+	642.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44971.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.02	5.79	5.7	5.63	5.32	5.33	8.97	7.65	10.82	9.04	19.09	10.34
Merged-chr12-111693400-2	chr12	111693307	111693507	+	642.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15302.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.81	1.51	1.14	0.4	12.27	6.59	6.98	3.84	9.05	6.53	9.04	10.65
Merged-chr11-116078339-2	chr11	116078216	116078416	+	642.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009573)	promoter-TSS (NM_001009573)	-355.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	9.69	5.03	6.28	1.21	6.55	1.25	5.65	3.53	6.1	3.51	0.5	7.21
Merged-chr4-116656237-2	chr4	116656123	116656323	+	642.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4549.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	6.46	5.03	7.99	9.65	8.18	10.98	1.0	5.66	7.47	5.52	6.53	6.58
Merged-chr12-40257425-3	chr12	40257337	40257537	+	642.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34073.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	10.5	2.01	6.28	8.04	15.14	4.39	7.64	5.94	11.6	6.03	10.05	7.52
Merged-chr6-122742661-1	chr6	122742561	122742761	+	642.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011401)	promoter-TSS (NM_011401)	84.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	9.69	2.52	3.42	5.23	6.55	8.78	6.64	4.01	6.88	2.51	7.03	11.28
Merged-chr8-67950946-2	chr8	67950856	67951056	+	642.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	23618.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	6.46	4.53	6.28	8.04	2.86	5.64	6.64	6.56	6.69	8.03	6.53	4.07
Merged-chr7-122135263-2	chr7	122135166	122135366	+	642.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	2225.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	7.27	7.8	1.14	2.41	3.27	3.14	3.32	6.95	12.39	6.53	10.55	6.89
Merged-chr9-65303784-1	chr9	65303684	65303884	+	642.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001044389, intron 3 of 12)	MTEb|LTR|ERVL-MaLR	9524.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	6.06	1.26	5.13	4.42	7.36	4.39	3.65	5.07	4.92	5.52	6.53	3.76
Merged-chr9-118858747-1	chr9	118858647	118858847	+	642.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-67789.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.85	4.02	1.14	2.82	6.55	4.7	8.64	3.93	8.06	7.03	5.02	6.58
Merged-chr15-100612073-3	chr15	100611954	100612154	+	642.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3056.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	7.27	8.55	9.7	3.62	4.09	4.7	6.98	7.91	5.9	11.05	7.03	8.46
Merged-chr9-120012971-2	chr9	120012879	120013079	+	642.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011724)	TTS (NM_011724)	10619.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	1.62	2.01	3.42	1.61	5.73	5.64	0.66	4.6	7.28	11.05	14.07	7.21
Merged-chr10-20003241-3	chr10	20003131	20003331	+	642.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	68705.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	7.27	7.8	4.56	10.46	5.32	6.27	3.32	6.45	12.19	6.03	13.57	2.19
Merged-chr3-67564885-2	chr3	67564773	67564973	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17895.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	6.06	5.03	3.99	5.23	4.91	1.88	5.98	6.2	7.87	3.51	14.57	7.21
Merged-chr11-74664501-1	chr11	74664401	74664601	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081158, intron 13 of 25)	intron (NM_001081158, intron 13 of 25)	15006.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.23	2.26	1.14	4.42	4.5	5.96	2.66	4.93	5.7	3.51	0.0	4.07
Merged-chr8-125640331-3	chr8	125640243	125640443	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-29475.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	16.96	2.77	13.69	6.44	7.77	10.03	4.65	4.91	9.05	9.04	12.06	6.89
Merged-chr7-19770549-1	chr7	19770449	19770649	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_020486)	promoter-TSS (NM_020486)	-17.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	12.52	5.03	3.42	9.25	2.45	6.9	7.97	2.1	6.1	7.03	3.01	6.89
Merged-chr6-54866931-2	chr6	54866833	54867033	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50017.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	8.48	6.54	2.85	2.41	8.18	16.31	10.96	4.04	8.65	6.03	2.01	8.14
Merged-chr4-135294064-2	chr4	135293963	135294163	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21303.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.86	5.03	3.42	2.82	4.5	1.25	3.65	3.22	5.9	5.02	5.02	4.39
Merged-chr13-99263462-2	chr13	99263361	99263561	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78638.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	2.42	6.29	7.99	5.23	2.45	2.82	5.31	4.57	6.29	13.56	11.56	9.08
Merged-chr9-23601723-1	chr9	23601623	23601823	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	378647.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	5.25	8.8	6.28	6.84	7.36	5.02	7.31	5.66	4.92	2.01	3.01	0.94
Merged-chr6-106793747-3	chr6	106793669	106793869	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	6318.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	9.69	5.53	7.99	1.61	4.91	5.96	12.95	5.21	15.34	8.54	8.04	6.89
Merged-chr4-132947002-1	chr4	132946902	132947102	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24451.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	5.65	4.78	2.28	4.83	9.82	7.21	7.97	6.28	10.03	6.53	9.04	4.7
Merged-chr1-84238143-1	chr1	84238043	84238243	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	(CAGAGA)n|Simple_repeat|Simple_repeat	-19182.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	6.06	7.29	10.84	6.84	8.59	2.2	3.32	2.8	14.95	3.51	9.04	4.7
Merged-chr1-138993702-1	chr1	138993602	138993802	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	16045.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	7.67	2.77	2.85	5.23	6.95	4.7	0.33	6.45	5.31	8.03	8.04	5.33
Merged-chr18-66461179-2	chr18	66461049	66461249	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	2545.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.23	10.06	0.0	4.42	6.95	10.35	3.65	3.03	7.67	9.04	5.53	4.39
Merged-chr7-28151929-2	chr7	28151828	28152028	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164655, intron 10 of 19)	intron (NM_001164655, intron 10 of 19)	-17820.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	6.04	3.42	8.04	2.86	5.64	2.99	3.2	3.54	4.02	5.02	7.21
Merged-chr2-84653548-2	chr2	84653443	84653643	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 1 of 18)	B2_Mm2|SINE|B2	-2803.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.25	8.55	2.28	10.46	11.86	6.9	3.99	1.4	7.47	13.56	21.1	4.07
Merged-chr9-21431195-2	chr9	21431092	21431292	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	6284.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	3.63	5.03	8.56	14.08	5.32	7.53	5.98	7.63	7.28	4.52	13.06	5.95
Merged-chr14-43984065-2	chr14	43983963	43984163	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22355.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	3.63	5.28	1.14	3.62	9.82	6.9	3.99	5.05	7.28	8.03	7.54	4.07
Merged-chr1-153532401-3	chr1	153532300	153532500	+	642.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028749, intron 4 of 11)	intron (NM_028749, intron 4 of 11)	17314.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	6.06	6.54	5.7	3.22	9.0	7.84	10.63	8.55	12.19	10.54	10.05	3.76
Merged-chr5-117136006-2	chr5	117135906	117136106	+	642.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	2418.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	9.29	5.79	8.56	4.42	7.36	9.41	6.31	14.86	9.24	13.05	8.54	3.76
Merged-chr6-33539707-2	chr6	33539621	33539821	+	642.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	290593.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	2.42	6.04	1.71	9.25	7.36	2.2	5.98	7.04	4.52	0.5	5.02	5.64
Merged-chr7-142057009-3	chr7	142056914	142057114	+	642.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	3839.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	9.69	10.31	7.42	0.8	4.91	16.62	2.33	6.59	9.64	15.57	3.52	4.07
Merged-chr1-60668482-1	chr1	60668382	60668582	+	642.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77906.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.4	3.77	1.14	2.41	4.09	5.96	4.65	5.05	0.98	2.51	2.51	1.88
Merged-chr6-87876378-1	chr6	87876278	87876478	+	642.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11562.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	9.69	1.51	5.7	2.41	8.18	5.33	7.31	6.03	5.31	1.51	4.52	4.7
Merged-chr7-66250255-3	chr7	66250156	66250356	+	642.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131468.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	6.46	7.29	3.42	5.23	7.77	9.09	2.66	7.51	6.69	9.54	13.06	10.65
Merged-chr10-96279260-1	chr10	96279160	96279360	+	642.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53053.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	12.92	7.8	4.56	2.41	7.36	12.86	8.97	4.88	11.41	16.07	6.03	3.13
Merged-chr3-96575699-3	chr3	96575608	96575808	+	642.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8907.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	10.9	6.29	1.14	8.45	9.41	6.59	5.31	11.52	5.9	8.54	8.04	7.83
Merged-chr7-109486487-2	chr7	109486372	109486572	+	642.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181853, intron 1 of 19)	intron (NM_181853, intron 1 of 19)	7266.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	8.88	5.03	2.85	4.83	5.32	3.45	2.99	6.84	8.46	5.02	13.57	10.65
Merged-chr11-3914736-3	chr11	3914637	3914837	+	642.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-73.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	9.29	8.05	5.13	4.42	6.95	13.48	2.99	5.55	12.0	7.53	13.57	7.52
Merged-chr2-156439873-1	chr2	156439773	156439973	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	18964.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.81	1.76	6.28	3.22	2.45	0.0	0.66	0.03	12.59	6.03	9.04	4.39
Merged-chr14-120288650-1	chr14	120288550	120288750	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	12981.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.62	3.02	1.14	2.01	5.32	11.29	2.99	4.12	1.57	2.51	1.0	2.51
Merged-chr7-3506100-2	chr7	3505981	3506181	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3457.0	NM_177363	245126.0	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.0	4.53	15.4	3.62	4.5	5.02	2.33	5.89	8.26	3.51	14.57	7.21
Merged-chr5-122731523-1	chr5	122731423	122731623	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	23979.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.25	4.78	8.56	11.26	4.5	7.84	5.31	3.25	7.67	8.03	9.04	8.46
Merged-chr5-134541096-1	chr5	134540996	134541196	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	11338.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	2.02	3.52	14.26	7.24	7.36	3.14	1.33	4.96	4.33	5.52	2.51	4.7
Merged-chr3-65956039-1	chr3	65955939	65956139	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	2210.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.88	5.28	5.7	6.03	6.55	9.41	4.65	3.67	3.54	1.51	6.03	5.95
Merged-chr11-114792065-1	chr11	114791965	114792165	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028055, exon 3 of 3)	exon (NM_028055, exon 3 of 3)	3827.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	4.85	4.78	10.27	6.84	4.91	3.14	3.99	4.65	2.56	0.5	1.0	3.76
Merged-chr12-73517374-1	chr12	73517274	73517474	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29021.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	3.23	2.77	0.0	6.84	2.86	0.94	4.98	0.56	2.56	2.01	1.51	1.88
Merged-chr2-112449774-1	chr2	112449674	112449874	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5251.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	5.65	5.53	2.28	1.61	4.09	4.7	2.99	4.15	11.01	8.03	12.06	3.45
Merged-chr7-106954029-1	chr7	106953929	106954129	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2905.0	NM_206897	233670.0	Mm.296765	NM_206897	ENSMUSG00000036647	Olfr6	M50|MOR103-16	olfactory receptor 6	protein-coding	2.42	0.0	0.0	0.0	2.86	3.14	5.31	7.51	0.0	0.0	0.0	0.0
Merged-chr10-50609680-1	chr10	50609580	50609780	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	17011.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	2.02	6.29	9.13	0.0	7.77	1.57	3.32	6.73	8.26	6.03	5.02	3.45
Merged-chr11-6174961-1	chr11	6174861	6175061	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-1630.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	5.65	5.53	9.13	8.85	6.14	3.45	6.98	6.34	3.15	1.51	10.55	5.33
Merged-chr14-48465146-1	chr14	48465046	48465246	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	18794.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	2.02	3.52	3.42	10.05	3.68	4.7	3.99	5.52	2.16	4.52	8.04	2.82
Merged-chr6-87037956-1	chr6	87037856	87038056	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4890.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0.81	1.76	9.7	2.41	8.18	3.45	3.99	4.04	6.49	1.0	11.05	6.27
Merged-chrX-169982153-1	chrX	169982053	169982253	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 5 of 9)	intron (NM_010797, intron 5 of 9)	-3236.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	8.85	4.52	6.53	8.46
Merged-chr12-95745665-1	chr12	95745565	95745765	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53439.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.4	4.02	3.42	3.22	11.05	3.14	7.31	5.8	5.7	8.54	5.02	5.33
Merged-chr15-87108390-2	chr15	87108283	87108483	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-435916.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.42	1.51	2.28	4.83	3.27	1.88	4.65	4.93	7.87	5.02	11.56	10.65
Merged-chr10-115351157-1	chr10	115351057	115351257	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359472, intron 3 of 6)	intron (NM_001359472, intron 3 of 6)	11092.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	6.06	8.3	6.28	2.41	3.68	1.88	4.32	0.84	8.65	4.52	6.03	7.83
Merged-chr7-120834554-1	chr7	120834454	120834654	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8277.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.65	1.51	3.99	0.4	4.5	5.64	3.99	4.04	8.26	5.02	4.52	6.58
Merged-chr9-109003392-1	chr9	109003292	109003492	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153430, intron 3 of 13)	B3|SINE|B2	11490.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	2.83	3.02	2.28	2.82	4.09	5.64	2.66	4.88	4.13	6.53	5.02	4.7
Merged-chr14-63147272-1	chr14	63147172	63147372	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	24810.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.85	6.29	1.14	0.0	11.05	1.88	3.32	5.41	3.34	2.51	0.5	1.57
Merged-chr3-57663948-1	chr3	57663848	57664048	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12264.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	2.83	2.26	0.0	2.01	2.86	5.64	1.33	6.59	3.34	2.51	4.52	1.25
Merged-chr14-20508597-1	chr14	20508497	20508697	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008914, intron 12 of 13)	intron (NM_008914, intron 12 of 13)	-11696.0	NM_029104	74843.0	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	4.04	2.01	3.42	4.83	2.45	3.76	4.98	7.18	2.56	0.5	2.51	2.19
Merged-chr1-16122346-1	chr1	16122246	16122446	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	16464.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.63	1.01	1.14	2.82	0.82	3.14	5.31	5.52	4.52	9.54	11.05	1.57
Merged-chr10-105572945-2	chr10	105572850	105573050	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	1529.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	9.69	2.26	0.0	3.22	2.45	7.53	3.65	5.58	9.44	3.51	5.53	6.89
Merged-chr4-53104651-1	chr4	53104551	53104751	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	55244.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.42	2.52	3.42	0.0	6.95	3.14	4.32	7.04	9.05	1.0	8.54	8.14
Merged-chr18-12218688-1	chr18	12218588	12218788	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008720, intron 4 of 24)	B3|SINE|B2	17698.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	1.62	0.5	2.85	0.0	4.91	3.14	4.98	6.5	2.16	0.0	1.51	1.25
Merged-chr5-88500668-1	chr5	88500568	88500768	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12693.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	3.23	2.77	2.28	2.41	3.68	3.76	4.32	3.53	6.69	3.01	6.53	2.82
Merged-chr1-88424811-1	chr1	88424711	88424911	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029269, intron 7 of 7)	intron (NM_029269, intron 7 of 7)	17801.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	6.06	2.01	2.28	1.61	12.68	6.9	1.0	6.98	6.69	6.03	14.07	3.76
Merged-chr4-130899047-1	chr4	130898947	130899147	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14287.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.25	2.52	1.71	0.0	5.73	1.88	3.99	3.84	6.1	3.51	6.53	8.46
Merged-chr9-78596993-1	chr9	78596893	78597093	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8948.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	3.23	4.02	1.14	3.22	5.32	5.33	2.99	5.66	5.11	1.51	11.05	4.7
Merged-chr7-96870655-1	chr7	96870555	96870755	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 26 of 32)	MIRc|SINE|MIR	-69106.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	5.25	3.77	3.42	2.01	4.09	5.64	2.66	7.51	0.59	3.01	2.51	2.82
Merged-chr2-84530750-1	chr2	84530650	84530850	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-23877.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.23	2.26	5.7	0.4	4.09	3.45	4.98	4.71	3.15	2.01	4.52	6.58
Merged-chr4-108691669-1	chr4	108691569	108691769	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183300, exon 4 of 16)	exon (NM_183300, exon 4 of 16)	32243.0	NM_183300	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.25	1.51	3.42	0.8	1.64	6.59	3.32	5.19	3.34	1.0	3.52	1.25
Merged-chr2-35093784-1	chr2	35093684	35093884	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178885, intron 3 of 9)	intron (NM_178885, intron 3 of 9)	6901.0	NM_001243102	98870.0	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.81	1.51	3.99	2.82	1.64	6.59	1.33	4.51	2.16	0.0	5.53	4.7
Merged-chr13-44404411-1	chr13	44404311	44404511	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35316.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	2.42	2.01	3.42	1.61	6.55	2.51	0.66	2.78	8.26	3.01	7.03	2.82
Merged-chr19-10689975-1	chr19	10689875	10690075	+	642.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1240.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	3.23	7.8	11.98	0.8	1.64	3.14	0.0	1.91	2.56	1.0	3.01	1.57
Merged-chr6-90483551-1	chr6	90483451	90483651	+	642.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20975.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.44	4.53	9.13	11.66	3.68	1.25	2.66	7.26	4.72	0.5	1.51	3.13
Merged-chr18-64578301-1	chr18	64578201	64578401	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 4 of 27)	intron (NM_001001488, intron 4 of 27)	-61744.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	1.62	2.01	2.85	2.82	0.82	5.96	4.65	6.11	0.0	0.0	2.01	2.51
Merged-chr8-123924897-1	chr8	123924797	123924997	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172288, intron 12 of 25)	intron (NM_172288, intron 12 of 25)	24368.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	6.46	5.03	4.56	6.44	9.41	8.78	5.98	5.75	6.69	7.03	16.08	6.27
Merged-chr3-156563270-1	chr3	156563170	156563370	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	1476.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	8.48	7.04	3.99	2.01	2.86	0.94	0.66	3.9	7.47	5.02	11.05	5.33
Merged-chr3-51046152-1	chr3	51046052	51046252	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178295.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	2.42	2.52	0.0	8.45	4.09	6.9	5.31	15.45	0.39	0.0	3.01	3.45
Merged-chr1-140269089-1	chr1	140268989	140269189	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22832.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	2.42	2.52	1.14	2.41	5.32	2.51	3.32	7.18	4.72	4.52	6.53	1.57
Merged-chr3-9154374-1	chr3	9154274	9154474	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	92410.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	3.63	3.52	5.13	4.83	4.09	1.57	9.97	4.65	2.16	4.02	3.01	3.13
Merged-chr17-64538541-1	chr17	64538441	64538641	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	17049.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	2.83	1.01	2.85	4.42	3.27	4.7	1.99	6.64	2.16	2.01	1.51	3.45
Merged-chr1-43299672-1	chr1	43299572	43299772	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102911.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	1.62	2.77	0.57	6.44	2.45	4.7	2.66	9.2	4.92	5.02	8.54	7.21
Merged-chr16-93191511-1	chr16	93191411	93191611	+	642.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	161678.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	5.65	9.56	8.56	5.63	7.36	7.53	5.31	2.83	7.28	6.03	2.01	4.39
Merged-chr4-141385336-1	chr4	141385236	141385436	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146307, exon 18 of 19)	exon (NM_001146307, exon 18 of 19)	12763.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	3.63	5.28	1.14	2.01	8.18	9.41	1.99	3.53	10.42	5.02	4.52	3.13
Merged-chr4-148604965-1	chr4	148604865	148605065	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010767)	TTS (NM_010767)	2421.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	2.83	5.28	5.13	0.0	2.05	4.08	4.98	4.29	3.15	6.53	13.06	5.01
Merged-chr12-105010566-1	chr12	105010466	105010666	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-757.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	5.65	3.77	1.14	0.8	8.18	11.6	6.64	5.38	5.11	3.51	3.52	1.57
Merged-chr2-4505002-1	chr2	4504902	4505102	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	ID_B1|SINE|B4	-54752.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.04	2.77	0.0	0.0	1.64	3.45	5.65	3.14	9.83	11.05	6.53	3.45
Merged-chr2-128573356-1	chr2	128573256	128573456	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18985.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	4.44	5.03	4.56	4.02	2.45	6.27	14.62	3.9	6.1	7.53	8.54	5.33
Merged-chr17-30972205-1	chr17	30972105	30972305	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 5 of 21)	intron (NM_177465, intron 5 of 21)	17522.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.4	0.5	0.0	1.61	1.64	1.25	2.33	0.98	7.28	4.02	4.02	8.14
Merged-chr15-13319429-1	chr15	13319329	13319529	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145754.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.21	2.52	0.0	1.61	7.77	2.82	1.99	5.27	4.92	4.52	8.54	1.57
Merged-chr12-26071710-1	chr12	26071610	26071810	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	138795.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	4.04	9.56	10.27	6.44	9.0	2.82	12.62	5.44	9.05	4.02	5.02	7.52
Merged-chr14-104901328-1	chr14	104901228	104901428	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015593, intron 3 of 5)	MTD|LTR|ERVL-MaLR	213348.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	2.42	4.02	7.42	4.83	4.91	5.64	2.33	7.96	5.9	2.51	6.03	2.19
Merged-chr2-32591289-1	chr2	32591189	32591389	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	4211.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	14.54	6.29	1.14	2.41	4.91	9.41	7.31	5.1	6.69	4.52	2.01	10.96
Merged-chr14-29970736-1	chr14	29970636	29970836	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019979, intron 2 of 4)	MTC|LTR|ERVL-MaLR	2356.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	4.04	3.02	5.13	1.61	0.0	3.14	0.66	2.92	5.51	0.0	1.51	4.07
Merged-chr10-128731175-3	chr10	128731084	128731284	+	641.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016811, exon 11 of 24)	exon (NM_016811, exon 11 of 24)	12892.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	7.67	9.06	12.55	11.26	5.32	5.64	6.98	6.53	11.8	12.55	14.07	5.95
Merged-chr5-30649515-3	chr5	30649440	30649640	+	641.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	1601.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	8.88	2.26	5.7	3.22	5.32	8.47	4.32	8.1	4.92	10.54	9.04	5.95
Merged-chr19-16130902-3	chr19	16130795	16130995	+	641.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1936.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.46	6.79	9.13	11.26	2.86	2.2	5.31	6.59	8.85	8.03	5.02	6.27
Merged-chr7-27542356-2	chr7	27542257	27542457	+	641.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 3 of 13)	intron (NM_001317355, intron 3 of 13)	10861.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	2.42	4.78	3.42	0.8	4.5	6.27	7.64	9.79	9.83	10.04	5.53	8.46
Merged-chr6-41605404-2	chr6	41605284	41605484	+	641.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146351)	promoter-TSS (NM_001146351)	-98.0	NM_001146351	13848.0	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	3.63	5.03	2.28	4.02	4.5	4.7	5.65	9.22	5.51	8.54	18.59	7.52
Merged-chr4-88725572-3	chr4	88725459	88725659	+	641.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3051.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.86	10.82	4.56	6.44	8.18	6.27	6.64	6.03	7.08	17.57	5.53	8.77
Merged-chr8-53627113-2	chr8	53627007	53627207	+	641.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146208, intron 1 of 9)	RLTR25B|LTR|ERVK	11958.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	8.08	9.81	4.56	3.22	10.64	3.76	4.65	3.28	11.01	12.55	11.56	4.7
Merged-chr19-4100994-2	chr19	4100904	4101104	+	641.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008851, exon 1 of 23)	5' UTR (NM_008851, exon 1 of 23)	382.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	4.44	6.54	9.13	1.61	13.09	4.08	2.99	2.66	4.52	11.05	8.54	5.01
Merged-chr10-39909055-2	chr10	39908959	39909159	+	641.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9821.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	2.42	8.8	7.42	2.41	7.36	0.63	6.64	7.79	4.72	4.02	4.52	8.14
Merged-chr19-18622108-1	chr19	18622008	18622208	+	641.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	Lx3A|LINE|L1	9705.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	1.62	2.01	3.42	3.62	8.18	4.39	9.63	4.68	4.72	4.02	4.52	6.89
Merged-chr2-170116896-2	chr2	170116798	170116998	+	641.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	14322.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	9.69	7.29	2.28	8.85	7.36	13.17	4.65	7.29	12.0	17.07	8.54	2.82
Merged-chr12-26342363-1	chr12	26342263	26342463	+	641.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 2 of 8)	intron (NM_080563, intron 2 of 8)	-4347.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	2.02	3.77	0.0	1.61	5.73	7.84	10.3	4.21	1.18	1.0	0.0	1.25
Merged-chr9-78191947-3	chr9	78191831	78192031	+	641.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010357)	promoter-TSS (NM_010357)	-35.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	9.29	6.04	3.42	2.41	9.0	6.9	5.31	6.95	11.41	18.58	11.56	5.95
Merged-chr15-78405964-1	chr15	78405864	78406064	+	641.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	-105.0	NM_009437	22117.0	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	9.29	5.03	6.28	5.63	7.77	7.21	4.98	6.28	8.65	2.51	3.01	3.45
Merged-chr7-126565827-1	chr7	126565727	126565927	+	641.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146200, intron 2 of 20)	intron (NM_146200, intron 2 of 20)	539.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	2.02	2.52	2.28	0.4	2.45	15.99	1.0	4.35	10.03	16.57	14.57	4.7
Merged-chr3-9067275-3	chr3	9067177	9067377	+	641.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040597, intron 2 of 2)	intron (NR_040597, intron 2 of 2)	5313.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	5.65	4.78	8.56	4.02	11.86	5.64	2.33	10.4	11.21	11.55	11.05	5.95
Merged-chr9-85375279-1	chr9	85375179	85375379	+	641.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48129.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.86	2.52	2.28	1.21	4.91	7.53	6.31	5.94	7.08	5.02	6.03	5.33
Merged-chr6-88627487-1	chr6	88627387	88627587	+	641.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001278671)	promoter-TSS (NM_001278671)	-39.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	4.44	5.28	4.56	6.03	11.05	4.7	4.65	6.08	3.74	2.01	1.0	3.13
Merged-chr3-127526836-1	chr3	127526736	127526936	+	641.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18253.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	0.0	0.0	0.0	0.8	0.41	1.25	2.66	0.22	7.87	5.02	7.03	8.77
Merged-chr10-42697202-3	chr10	42697096	42697296	+	641.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172416, intron 4 of 5)	intron (NM_172416, intron 4 of 5)	18280.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	9.29	8.05	6.85	7.64	9.0	10.66	4.65	6.2	8.85	7.03	14.07	7.52
Merged-chr13-102866237-2	chr13	102866134	102866334	+	641.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	105979.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	6.46	9.81	15.97	10.46	2.05	3.76	4.32	18.87	8.85	6.03	8.54	5.64
Merged-chr12-35182887-2	chr12	35182786	35182986	+	641.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12011.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	6.06	3.52	6.85	8.85	14.32	6.27	4.98	7.07	8.26	12.05	20.1	3.13
Merged-chrX-60403368-2	chrX	60403288	60403488	+	641.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	617.0	NM_001359002	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	2.02	4.28	3.42	1.61	10.23	4.08	9.3	6.31	5.9	8.03	9.04	3.76
Merged-chr2-17740477-2	chr2	17740350	17740550	+	641.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9382.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	3.63	1.76	6.28	2.01	4.09	2.82	5.65	4.85	7.28	6.03	11.56	9.71
Merged-chr15-59568020-3	chr15	59567911	59568111	+	641.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-80643.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	8.08	7.04	3.42	4.42	11.05	9.09	7.64	8.47	6.88	14.56	12.06	3.76
Merged-chr17-35168960-2	chr17	35168862	35169062	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4085.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	8.08	3.52	1.14	3.22	3.27	6.59	4.98	6.53	9.24	11.55	10.55	9.4
Merged-chr10-13870766-1	chr10	13870666	13870866	+	641.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-514.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	5.65	10.56	5.13	6.44	5.32	10.66	3.32	3.64	10.23	8.54	7.54	9.08
Merged-chr8-83145652-2	chr8	83145552	83145752	+	641.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-19700.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.88	3.27	9.13	4.02	6.95	9.72	9.63	10.71	4.52	2.01	1.51	3.45
Merged-chr16-75933499-1	chr16	75933399	75933599	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24233.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	1.62	2.52	6.85	1.61	11.45	4.08	10.3	5.72	4.33	8.03	1.51	2.51
Merged-chr12-116416732-2	chr12	116416632	116416832	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 7 of 28)	MTD|LTR|ERVL-MaLR	11330.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	2.83	2.77	5.7	3.22	3.68	6.59	0.66	4.74	10.23	4.52	10.55	5.64
Merged-chr7-141020609-1	chr7	141020509	141020709	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-3717.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	2.42	0.75	2.28	1.61	6.55	3.76	5.65	6.7	4.72	5.02	7.54	2.82
Merged-chr4-142077176-1	chr4	142077076	142077276	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-7122.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.63	2.01	3.99	6.03	8.18	3.45	7.64	5.66	7.08	1.51	2.51	2.82
Merged-chr3-84769563-1	chr3	84769463	84769663	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46014.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.81	1.01	0.0	4.42	2.05	3.76	5.65	2.21	2.56	0.5	3.01	0.31
Merged-chr7-30348056-2	chr7	30347958	30348158	+	641.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	14714.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	7.67	6.29	5.13	1.61	4.09	7.84	1.99	7.07	7.67	3.01	6.53	1.88
Merged-chr19-7340904-2	chr19	7340831	7341031	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	929.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	4.04	7.04	3.99	6.84	7.77	4.39	2.66	3.06	10.62	9.04	6.03	5.01
Merged-chr3-53464341-1	chr3	53464241	53464441	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	524.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	4.85	4.53	3.42	7.24	2.86	3.14	5.65	4.04	6.49	8.54	6.53	1.57
Merged-chr18-88774295-1	chr18	88774195	88774395	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	119912.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	8.08	2.26	3.99	3.62	6.55	1.88	2.66	7.35	10.03	5.52	6.53	5.33
Merged-chr1-37999349-2	chr1	37999245	37999445	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	1335.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	4.04	4.78	4.56	9.65	3.27	5.64	9.3	6.25	8.06	7.53	14.57	7.21
Merged-chr4-98367620-3	chr4	98367531	98367731	+	641.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053157, intron 4 of 6)	Lx|LINE|L1	15634.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	8.88	5.79	4.56	6.84	11.45	5.64	7.97	2.92	16.13	14.56	11.56	7.21
Merged-chr15-96569318-2	chr15	96569188	96569388	+	641.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72674.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	1.62	4.02	5.7	2.41	0.82	10.35	6.98	4.21	6.49	6.03	8.04	6.27
Merged-chr19-15999453-2	chr19	15999290	15999490	+	641.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	14315.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	6.46	7.55	2.85	4.83	1.64	0.0	0.33	3.76	13.37	5.02	10.05	5.95
Merged-chr15-84845004-2	chr15	84844894	84845094	+	641.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	10105.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	6.06	5.28	8.56	4.83	5.32	6.59	1.0	4.46	6.88	8.03	8.54	4.07
Merged-chr18-24050081-1	chr18	24049981	24050181	+	641.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-29268.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	4.04	1.51	6.85	6.44	6.55	5.64	2.99	7.68	6.49	0.5	7.54	3.76
Merged-chr5-66069219-3	chr5	66069132	66069332	+	641.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28947.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	10.5	4.53	15.97	4.02	6.95	6.59	1.66	4.18	4.72	16.07	11.05	12.84
Merged-chr7-29001271-1	chr7	29001171	29001371	+	641.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355054, intron 28 of 31)	intron (NM_001355054, intron 28 of 31)	18417.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	3.63	4.53	4.56	5.23	3.68	11.29	5.65	5.92	3.74	4.02	5.53	5.64
Merged-chr7-66108137-3	chr7	66108111	66108311	+	641.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1304.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	8.48	4.28	3.99	4.02	3.27	5.33	2.99	2.97	8.26	4.02	4.02	5.33
Merged-chr15-102392608-3	chr15	102392501	102392701	+	641.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-13715.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	6.46	6.29	7.99	14.88	25.36	5.64	4.65	7.15	4.92	10.54	7.54	7.21
Merged-chrX-102619930-3	chrX	102619835	102620035	+	641.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173021, intron 6 of 31)	L1MC4|LINE|L1	24311.0	NM_008832	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	5.65	5.53	9.13	9.25	9.82	1.88	9.63	11.52	5.7	13.05	10.05	8.14
Merged-chr2-129186272-2	chr2	129186217	129186417	+	641.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5644.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	2.83	9.06	2.28	4.42	4.91	11.92	3.65	4.23	7.08	9.54	3.52	10.34
Merged-chr14-63413094-2	chr14	63413000	63413200	+	641.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4087.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	4.44	6.04	3.42	2.82	4.09	3.76	5.31	6.76	7.67	2.01	6.53	8.77
Merged-chr4-115709990-3	chr4	115709903	115710103	+	641.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28070.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	9.29	6.04	10.84	4.83	6.14	10.35	1.66	3.95	9.83	10.54	13.57	6.58
Merged-chr2-27281171-2	chr2	27281115	27281315	+	641.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 18 of 29)	intron (NR_133905, intron 18 of 29)	-33912.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	6.46	5.03	4.56	6.44	4.5	6.9	5.65	4.29	6.1	3.51	11.56	7.83
Merged-chr15-99705769-3	chr15	99705669	99705869	+	641.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031842, intron 6 of 12)	intron (NM_031842, intron 6 of 12)	3482.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	9.69	6.29	10.84	10.05	11.05	10.03	5.31	8.24	9.64	7.03	5.53	9.08
Merged-chr15-51899297-2	chr15	51899201	51899401	+	641.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21860.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	4.44	2.26	7.99	6.03	6.95	8.15	4.98	8.5	7.67	3.51	4.02	4.7
Merged-chr3-79794394-2	chr3	79794300	79794500	+	641.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	48262.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	1.62	2.01	2.28	4.42	7.36	5.02	3.99	4.71	13.57	8.54	13.57	5.33
Merged-chr10-81517425-3	chr10	81517357	81517557	+	641.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	6768.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	7.27	8.3	9.13	0.8	7.77	7.84	6.31	5.27	12.0	4.52	13.06	7.21
Merged-chr8-11005372-1	chr8	11005272	11005472	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2478.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.02	3.27	5.13	3.62	2.86	8.15	3.32	3.42	0.79	2.01	0.5	1.25
Merged-chr8-56293949-1	chr8	56293849	56294049	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	-603.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.46	7.8	5.7	10.86	9.0	5.96	5.31	8.05	4.52	10.54	9.55	10.02
Merged-chr3-142563622-2	chr3	142563470	142563670	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355403, intron 3 of 11)	intron (NM_001355403, intron 3 of 11)	3214.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	2.83	7.29	0.0	3.62	2.05	3.45	3.99	2.21	1.77	2.51	2.51	5.33
Merged-chr3-90220776-1	chr3	90220676	90220876	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-8.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	5.65	3.77	3.99	1.21	4.91	6.27	6.64	5.38	5.31	3.51	3.01	8.46
Merged-chr17-15621205-1	chr17	15621105	15621305	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10583.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	2.42	3.52	5.13	9.65	6.14	3.14	7.64	4.77	3.34	6.03	5.53	4.7
Merged-chr19-29420668-1	chr19	29420568	29420768	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	9749.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.63	3.02	2.85	5.63	2.86	5.33	3.65	5.33	5.7	5.02	3.01	1.25
Merged-chr9-57998468-1	chr9	57998368	57998568	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346787, intron 1 of 9)	intron (NM_001346787, intron 1 of 9)	444.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	8.48	6.54	2.85	3.62	3.27	3.45	3.99	3.25	5.9	3.01	3.01	4.07
Merged-chr16-4210445-1	chr16	4210345	4210545	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	2959.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	3.63	2.52	10.84	6.84	2.86	6.9	4.98	5.8	6.29	2.01	5.02	4.07
Merged-chr9-55166892-1	chr9	55166792	55166992	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346657, intron 2 of 11)	intron (NM_001346657, intron 2 of 11)	16809.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	2.83	1.76	10.27	5.23	4.5	0.94	3.65	5.94	2.95	0.0	4.02	3.45
Merged-chr4-94477207-2	chr4	94477108	94477308	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	79588.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.81	2.26	7.99	1.61	18.82	5.64	1.66	6.31	7.87	5.52	10.05	1.88
Merged-chr8-84970395-1	chr8	84970295	84970495	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001317385, intron 2 of 5)	intron (NM_001317385, intron 2 of 5)	773.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	9.29	3.27	0.0	12.07	9.41	3.14	6.31	2.47	0.59	4.02	6.03	5.33
Merged-chr2-132145480-1	chr2	132145380	132145580	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355430)	promoter-TSS (NM_001355430)	-160.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.04	2.77	3.42	0.8	3.68	8.15	1.99	5.52	5.11	5.02	1.0	3.13
Merged-chr4-141565390-1	chr4	141565290	141565490	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19228.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	1.62	1.01	1.71	1.61	2.05	1.57	4.98	4.4	3.34	1.0	2.01	5.95
Merged-chr19-24616597-1	chr19	24616497	24616697	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57411.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	1.62	0.5	0.0	0.0	2.05	5.64	4.98	8.69	0.0	0.0	0.0	0.0
Merged-chr18-5536989-2	chr18	5536900	5537100	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033552, intron 4 of 6)	intron (NR_033552, intron 4 of 6)	-54860.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.4	3.52	1.14	2.41	2.45	6.59	3.99	4.6	8.46	6.03	11.05	5.95
Merged-chr10-93049660-1	chr10	93049560	93049760	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	31936.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.81	0.0	0.0	0.8	0.0	0.0	0.0	0.5	6.88	1.0	8.04	1.57
Merged-chr11-83645232-1	chr11	83645132	83645332	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4146.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	2.83	2.26	1.14	2.82	3.68	6.27	1.66	4.65	2.16	3.51	2.01	0.94
Merged-chr7-99711384-1	chr7	99711284	99711484	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175316)	promoter-TSS (NM_175316)	-44.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	2.02	2.52	0.57	3.22	5.73	4.08	5.65	5.1	0.2	0.5	0.5	3.13
Merged-chr19-61225974-2	chr19	61225913	61226113	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009970, exon 7 of 12)	exon (NM_009970, exon 7 of 12)	2405.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.44	4.02	4.56	2.01	3.68	4.7	6.98	2.94	13.77	5.52	7.03	12.22
Merged-chr15-5134334-1	chr15	5134234	5134434	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-9527.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	6.86	3.52	1.14	0.4	3.68	5.02	3.99	1.54	9.24	12.55	7.54	1.25
Merged-chr12-33429994-1	chr12	33429894	33430094	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172253, intron 1 of 3)	CpG	370.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	15.75	12.07	9.13	14.48	11.86	12.23	9.3	8.33	8.26	9.54	9.55	10.02
Merged-chr9-45296723-1	chr9	45296623	45296823	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22377.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	6.46	5.53	1.71	1.61	7.77	6.27	7.97	7.01	6.1	4.02	3.01	5.01
Merged-chr5-92332138-1	chr5	92332038	92332238	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	311.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	2.02	7.8	9.13	4.83	6.95	5.64	0.66	1.35	3.93	5.52	2.01	4.7
Merged-chr2-23048234-1	chr2	23048134	23048334	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7993.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	2.42	0.5	3.99	1.61	7.36	6.27	1.99	6.11	5.9	3.01	5.02	1.25
Merged-chr1-162626090-1	chr1	162625990	162626190	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13060.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.23	3.27	2.28	2.82	8.59	4.39	5.98	6.25	1.97	5.02	2.01	5.33
Merged-chr10-81300310-1	chr10	81300210	81300410	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	PB1D7|SINE|Alu	7347.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	5.65	2.77	5.13	3.22	2.45	2.51	7.97	5.61	1.97	2.01	1.0	4.39
Merged-chr8-67957080-1	chr8	67956980	67957180	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17494.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	6.06	8.55	0.0	2.41	11.05	4.08	2.66	7.68	4.92	1.0	6.53	4.07
Merged-chr2-76644288-2	chr2	76644184	76644384	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	3710.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	1.62	2.01	2.85	11.26	6.95	4.7	1.99	5.02	5.11	2.51	8.54	5.64
Merged-chr3-107671704-1	chr3	107671604	107671804	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145542, intron 6 of 16)	intron (NM_145542, intron 6 of 16)	24352.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	7.27	2.01	9.13	7.24	5.73	3.45	2.33	5.86	9.05	1.51	8.54	5.33
Merged-chr10-37233067-1	chr10	37232967	37233167	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-94141.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.4	3.27	0.57	3.22	4.5	3.45	1.66	4.6	2.36	3.51	1.0	2.51
Merged-chr1-34840458-1	chr1	34840358	34840558	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	2592.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.06	2.01	5.13	2.82	4.91	4.39	1.0	5.89	6.1	12.55	5.53	2.82
Merged-chr1-36053805-1	chr1	36053705	36053905	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14595.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.63	2.77	6.28	1.61	3.27	1.57	1.0	0.95	8.46	5.02	3.52	2.51
Merged-chr17-67223942-1	chr17	67223842	67224042	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	L1MB5|LINE|L1	130517.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	1.26	0.0	0.0	0.41	0.63	0.0	0.36	2.95	6.03	5.02	4.39
Merged-chr13-104157855-1	chr13	104157755	104157955	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360778, intron 5 of 11)	ERVB2_1A-I_MM-int|LTR|ERVK	20611.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	6.46	5.53	9.7	2.41	1.23	2.2	1.99	1.79	1.77	0.5	0.5	0.31
Merged-chr18-53224422-1	chr18	53224322	53224522	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21240.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	2.42	0.5	1.71	5.63	0.41	0.31	0.66	0.59	9.05	2.01	7.54	1.57
Merged-chr13-98998142-1	chr13	98998042	98998242	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13577.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	1.62	1.51	0.0	0.8	6.95	3.76	2.99	6.03	8.26	7.53	6.03	6.89
Merged-chr3-145628068-2	chr3	145627970	145628170	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21915.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	2.02	3.52	1.14	0.8	4.09	4.7	2.66	6.31	10.62	4.02	16.08	5.95
Merged-chr11-96833164-1	chr11	96833064	96833264	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3196.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	6.46	5.28	9.13	5.23	3.68	7.21	1.33	5.07	1.57	3.51	1.0	0.31
Merged-chr6-97759497-1	chr6	97759397	97759597	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47561.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.65	3.52	1.14	1.21	3.27	3.76	6.64	6.7	6.69	5.52	5.53	2.51
Merged-chr2-166758017-1	chr2	166757917	166758117	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35750.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	2.02	3.52	6.85	0.8	1.64	7.53	1.66	4.54	13.18	7.03	4.02	5.01
Merged-chr7-30321117-1	chr7	30321017	30321217	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033140)	TTS (NM_001033140)	1258.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	6.86	3.77	1.14	0.8	6.95	4.08	6.64	4.74	0.79	0.5	0.0	1.57
Merged-chr6-108709711-3	chr6	108709579	108709779	+	640.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48745.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.06	9.06	10.27	8.45	7.77	9.72	9.97	4.32	6.88	6.03	12.56	7.52
Merged-chr6-146762506-3	chr6	146762406	146762606	+	640.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172734, intron 3 of 13)	intron (NM_172734, intron 3 of 13)	37576.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	9.29	10.82	5.7	7.24	10.64	16.62	6.31	4.65	8.06	6.03	11.56	8.14
Merged-chr18-58615381-3	chr18	58615269	58615469	+	640.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44113.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	8.88	2.26	3.42	12.47	6.95	16.31	7.31	6.76	7.47	8.03	10.55	4.7
Merged-chr4-132019142-3	chr4	132019053	132019253	+	640.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	29925.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.67	4.78	9.7	14.88	6.95	5.64	3.32	10.4	12.19	3.01	1.0	7.52
Merged-chr6-95098585-2	chr6	95098506	95098706	+	640.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19025.0	NR_153843	102634268.0	Mm.396160	NR_153843		Kbtbd8os	1700010K10Rik	kelch repeat and BTB (POZ) domain containing 8, opposite strand	ncRNA	0.81	7.04	3.42	2.82	2.05	5.02	3.99	5.61	7.08	4.52	11.56	4.39
Merged-chr2-32834662-2	chr2	32834557	32834757	+	640.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	12575.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	6.46	3.77	25.1	7.24	7.77	5.64	2.99	9.42	8.26	7.53	11.05	2.82
Merged-chr7-66386014-2	chr7	66385930	66386130	+	640.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	2311.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	9.29	7.55	4.56	6.44	6.55	6.9	3.65	3.95	11.6	15.06	9.55	2.51
Merged-chr18-69300694-2	chr18	69300616	69300816	+	640.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43776.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.23	3.27	7.99	2.82	7.77	3.76	4.32	9.45	10.42	7.03	10.05	3.76
Merged-chr7-125482482-1	chr7	125482382	125482582	+	640.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	9060.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.0	5.03	2.28	5.23	1.64	1.25	0.0	0.62	8.65	1.0	10.55	10.34
Merged-chr7-30287228-1	chr7	30287128	30287328	+	640.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-4467.0	NM_001360763	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	4.04	2.01	15.4	5.23	5.32	6.9	9.97	5.24	5.51	2.51	6.53	7.21
Merged-chr11-94611592-3	chr11	94611518	94611718	+	640.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9832.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	9.69	3.02	13.69	4.02	17.18	4.7	2.66	5.33	13.57	14.56	1.51	2.51
Merged-chr2-30827630-1	chr2	30827530	30827730	+	640.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	670.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	7.27	2.26	7.99	6.03	7.36	9.09	3.99	6.81	8.65	7.03	9.04	5.01
Merged-chr7-19716508-1	chr7	19716408	19716608	+	640.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008990)	TTS (NM_008990)	-1079.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	1.62	3.02	0.57	3.62	3.68	7.53	1.0	2.47	12.0	9.04	2.01	8.77
Merged-chr1-171397747-1	chr1	171397647	171397847	+	640.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005508, intron 2 of 11)	intron (NM_001005508, intron 2 of 11)	8787.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	4.44	5.03	1.71	1.61	8.18	3.45	5.98	4.43	6.88	7.53	3.01	2.82
Merged-chr2-33973616-2	chr2	33973506	33973706	+	640.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85660.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	10.9	2.77	1.71	2.82	7.77	6.27	8.3	3.87	12.19	9.04	14.07	10.65
Merged-chr12-3739288-2	chr12	3739192	3739392	+	640.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67688.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.65	3.52	8.56	6.44	4.09	5.96	7.64	5.3	7.28	10.54	12.56	8.77
Merged-chr17-24488773-4	chr17	24488617	24488817	+	640.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	-66.0	NM_001360469	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	5.65	1.51	3.99	2.41	6.95	7.21	1.33	5.78	7.47	6.53	7.54	6.27
Merged-chr7-58677414-2	chr7	58677342	58677542	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	19240.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	5.65	8.3	9.7	2.01	2.86	7.21	2.66	1.29	8.26	6.53	8.04	7.83
Merged-chr11-100826797-2	chr11	100826685	100826885	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-4215.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	6.46	5.53	4.56	2.01	7.36	5.64	3.32	6.34	7.28	5.52	10.55	12.22
Merged-chr6-29322893-2	chr6	29322782	29322982	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207258, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	3742.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	3.63	4.53	5.13	4.42	5.32	3.14	3.65	5.1	6.29	2.51	13.06	2.82
Merged-chr10-94690556-1	chr10	94690456	94690656	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029852, intron 1 of 15)	RMER10A|LTR|ERVL	1766.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	6.46	5.28	6.28	6.03	5.73	5.64	4.98	9.17	8.85	8.54	4.52	5.64
Merged-chr11-88132093-1	chr11	88131993	88132193	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	32947.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	4.85	3.52	3.42	4.02	4.09	7.53	4.65	7.01	8.46	5.52	5.02	4.39
Merged-chr9-16363905-2	chr9	16363789	16363989	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	14342.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	11.31	7.04	7.42	8.45	5.73	3.76	6.31	7.74	3.93	2.01	4.52	3.45
Merged-chr11-75596629-1	chr11	75596529	75596729	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	3602.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	4.44	1.76	2.85	3.22	9.0	4.08	5.31	7.07	8.26	4.02	5.02	6.58
Merged-chr9-64936679-2	chr9	64936593	64936793	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144813, intron 3 of 9)	intron (NM_144813, intron 3 of 9)	14914.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	7.67	2.01	9.7	6.03	9.82	2.82	1.33	3.62	10.42	5.02	13.57	5.95
Merged-chr18-69594222-1	chr18	69594122	69594322	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	248062.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.44	2.77	2.85	11.26	1.23	6.59	5.31	3.76	7.08	5.02	4.52	1.57
Merged-chr7-67462590-1	chr7	67462490	67462690	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89732.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	1.62	2.77	8.56	6.03	5.32	5.02	6.31	5.3	2.95	6.03	7.54	5.01
Merged-chr7-45078630-1	chr7	45078530	45078730	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025533)	TTS (NM_025533)	13583.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	2.02	1.51	3.42	2.41	0.82	5.96	2.66	1.82	5.51	5.52	3.01	2.82
Merged-chr13-45750199-1	chr13	45750099	45750299	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	214792.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.23	4.53	1.14	5.23	4.5	9.41	4.98	6.42	5.51	4.52	5.02	3.76
Merged-chr11-107113336-1	chr11	107113236	107113436	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	18586.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	9.29	1.76	0.0	9.65	2.86	7.21	5.31	5.97	6.69	4.02	1.51	5.64
Merged-chr1-89943424-3	chr1	89943324	89943524	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12248.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	9.69	5.53	0.0	1.61	9.41	7.84	8.3	10.68	6.69	13.56	15.07	6.58
Merged-chr9-54513662-1	chr9	54513562	54513762	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12036.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	1.62	0.5	3.42	0.0	8.18	6.9	1.66	5.44	7.08	7.53	7.03	0.63
Merged-chr15-40955369-2	chr15	40955269	40955469	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218332.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	5.65	6.54	11.98	5.63	9.41	5.33	4.98	5.3	10.82	12.55	10.55	3.13
Merged-chr11-59302861-1	chr11	59302761	59302961	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4069.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	8.88	11.07	7.99	7.24	4.91	3.14	0.0	1.82	3.15	6.03	3.52	5.01
Merged-chr15-97941509-2	chr15	97941425	97941625	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22704.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	8.88	16.85	5.13	1.61	9.82	6.59	3.65	4.4	11.8	10.04	6.53	1.88
Merged-chr1-45853000-1	chr1	45852900	45853100	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57834.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	1.62	0.0	4.56	0.8	4.09	7.21	3.99	7.18	3.15	5.52	8.54	4.39
Merged-chr7-45563872-1	chr7	45563772	45563972	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025330, intron 6 of 8)	RSINE1|SINE|B4	-6281.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	2.83	4.78	6.28	2.82	4.09	5.64	4.98	5.21	6.88	3.01	1.0	2.82
Merged-chr10-94587479-1	chr10	94587379	94587579	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172051, exon 4 of 4)	3' UTR (NM_172051, exon 4 of 4)	-1280.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	1.21	1.01	6.28	6.84	6.14	2.2	5.98	4.57	3.34	2.01	7.03	3.45
Merged-chr16-21380873-2	chr16	21380787	21380987	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42231.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.65	10.82	5.7	2.82	9.0	10.66	7.31	3.06	9.24	4.02	12.06	3.13
Merged-chr2-166995490-2	chr2	166995367	166995567	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	832.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	1.21	2.52	3.42	5.23	9.82	2.82	7.64	2.61	15.34	8.03	4.02	6.27
Merged-chr7-28435844-3	chr7	28435759	28435959	+	640.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175021, intron 1 of 12)	CpG	332.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	7.67	7.55	14.83	5.23	3.27	6.59	12.29	5.24	10.23	12.05	8.54	15.98
Merged-chr12-108309557-2	chr12	108309428	108309628	+	640.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001044380, intron 1 of 8)	L2c|LINE|L2	3258.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	5.65	8.3	22.82	6.84	5.73	2.2	2.66	5.8	0.59	2.01	4.52	2.51
Merged-chr7-116476044-2	chr7	116475957	116476157	+	640.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28312.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	2.42	4.02	11.98	9.65	9.82	5.33	6.64	5.97	18.29	5.02	12.56	5.64
Merged-chr13-41080422-2	chr13	41080318	41080518	+	640.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145803)	promoter-TSS (NM_001145803)	-712.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	6.46	2.77	10.27	6.03	2.45	10.03	8.3	4.91	11.6	11.05	8.04	7.21
Merged-chr13-33084405-2	chr13	33084318	33084518	+	640.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	315.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.63	5.28	11.41	2.41	6.55	1.25	1.66	4.21	13.77	9.54	15.58	4.39
Merged-chr13-30834537-1	chr13	30834437	30834637	+	640.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025588, intron 23 of 27)	intron (NM_025588, intron 23 of 27)	85304.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.65	4.28	1.71	8.04	5.32	7.84	10.3	4.85	4.92	7.03	11.56	3.13
Merged-chr8-78649171-1	chr8	78649071	78649271	+	640.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	139843.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	4.04	1.76	7.99	3.62	2.45	9.72	6.98	5.19	4.52	13.05	6.53	2.51
Merged-chr4-102574883-1	chr4	102574783	102574983	+	640.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4823.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	11.31	8.8	10.84	2.41	6.55	9.72	4.65	2.86	11.01	12.55	7.54	4.07
Merged-chr3-28026359-2	chr3	28026254	28026454	+	640.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 3 of 25)	RMER10A|LTR|ERVL	42183.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.42	3.77	3.42	0.8	6.55	4.39	6.64	5.05	12.98	5.52	10.05	8.14
Merged-chr1-154040353-1	chr1	154040253	154040453	+	640.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	140424.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	10.9	7.29	10.27	1.61	10.64	6.27	4.32	5.16	6.69	9.54	8.54	10.96
Merged-chr6-49008158-2	chr6	49008054	49008254	+	640.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8538.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	2.42	8.8	1.71	6.03	7.36	9.72	4.32	7.12	7.47	10.54	11.05	7.21
Merged-chr1-57837425-2	chr1	57837270	57837470	+	640.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8201.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	6.86	2.52	3.42	2.01	1.23	6.59	7.31	5.86	5.11	11.05	6.53	6.27
Merged-chr19-11324272-2	chr19	11324173	11324373	+	640.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027836, intron 5 of 6)	intron (NM_027836, intron 5 of 6)	10422.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	6.46	4.28	5.13	3.22	5.73	9.72	4.98	8.72	10.82	9.04	2.01	1.88
Merged-chr11-116095220-3	chr11	116095130	116095330	+	640.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8235.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	7.67	4.78	9.7	4.02	13.09	8.78	5.31	3.34	17.51	13.05	10.05	8.14
Merged-chr8-117543144-1	chr8	117543044	117543244	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	44869.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	5.25	2.01	4.56	3.62	10.64	7.21	2.99	5.94	14.55	7.53	7.03	4.7
Merged-chr8-69005414-1	chr8	69005314	69005514	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83322.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.42	5.03	6.85	12.07	3.27	5.33	3.99	4.63	8.06	5.02	5.53	8.46
Merged-chr8-124746146-1	chr8	124746046	124746246	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081120, intron 1 of 1)	RSINE1|SINE|B4	5663.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	8.48	6.04	6.85	3.22	0.0	9.72	1.99	1.63	3.93	0.0	1.0	0.31
Merged-chr5-93120672-2	chr5	93120585	93120785	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	27269.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	2.83	7.04	7.99	6.44	3.68	3.76	4.98	5.07	2.75	8.03	8.04	4.39
Merged-chr1-148906871-1	chr1	148906771	148906971	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1015568.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.23	2.77	0.0	2.41	6.55	3.14	1.0	9.14	4.72	5.52	6.03	1.57
Merged-chr2-27755112-1	chr2	27755012	27755212	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	44529.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	1.62	2.52	0.0	0.0	2.86	1.25	6.98	3.06	1.77	4.52	5.53	2.51
Merged-chr3-15861490-1	chr3	15861390	15861590	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-13003.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	1.21	6.04	2.28	4.02	6.55	10.03	8.97	4.99	3.34	4.52	5.02	6.27
Merged-chr1-54883202-1	chr1	54883102	54883302	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	43185.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.42	1.26	0.0	1.21	4.09	6.27	5.31	4.09	4.13	1.0	2.51	1.88
Merged-chr16-91862311-1	chr16	91862211	91862411	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	69319.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.83	6.54	9.13	4.02	4.91	5.33	2.33	6.84	2.75	8.54	6.03	7.21
Merged-chr2-110205053-1	chr2	110204953	110205153	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100672.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	3.63	5.03	1.14	5.63	3.27	2.51	3.65	6.42	11.01	5.52	4.52	6.27
Merged-chr14-21988447-2	chr14	21988345	21988545	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145459, intron 1 of 2)	CpG-4314	1156.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	4.44	7.29	5.13	12.87	7.77	9.09	1.33	3.87	8.06	5.02	16.58	2.51
Merged-chr4-105483464-1	chr4	105483364	105483564	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	326117.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.42	3.02	1.14	4.02	7.77	5.02	7.31	5.44	3.34	2.51	6.53	5.33
Merged-chr2-165792936-1	chr2	165792836	165793036	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001252585, exon 19 of 22)	exon (NM_001252585, exon 19 of 22)	65237.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.62	3.52	4.56	2.41	3.68	5.02	4.98	5.38	3.34	6.03	4.02	2.51
Merged-chr2-69017125-2	chr2	69017020	69017220	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-118680.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	3.23	3.02	5.7	4.02	7.77	6.27	5.98	6.56	8.06	6.03	4.52	7.83
Merged-chr4-3699511-1	chr4	3699411	3699611	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-15453.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	1.62	1.51	9.13	2.41	4.09	5.02	0.33	7.15	4.13	3.01	15.07	2.19
Merged-chr12-40473851-1	chr12	40473751	40473951	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	27798.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.65	2.26	1.14	4.02	12.27	6.27	0.66	5.13	1.77	2.51	3.01	0.0
Merged-chr15-97871250-1	chr15	97871150	97871350	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-26748.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	2.02	1.76	13.69	6.44	5.73	6.9	4.32	7.01	6.69	3.51	5.02	2.51
Merged-chr9-21989851-1	chr9	21989751	21989951	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-398.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	2.42	4.28	2.28	1.61	0.0	6.9	1.0	4.68	3.34	2.51	5.02	1.25
Merged-chr3-9500900-1	chr3	9500800	9501000	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	97822.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.81	1.51	1.71	1.61	1.23	9.41	9.63	5.36	3.74	0.0	2.01	0.0
Merged-chr12-84061083-1	chr12	84060983	84061183	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001346701)	TTS (NM_001346701)	-8241.0	NM_001347417	217698.0	Mm.484019	NM_145444	ENSMUSG00000042540	Acot5	BC016076|PTE-Ic	acyl-CoA thioesterase 5	protein-coding	2.83	1.76	3.42	0.8	6.55	5.64	1.66	5.92	5.7	13.56	10.55	4.39
Merged-chr17-31492644-1	chr17	31492544	31492744	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	19843.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	2.42	2.01	2.28	6.84	1.64	5.64	1.99	5.33	3.54	4.02	3.52	0.94
Merged-chr6-50160053-1	chr6	50159953	50160153	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 4 of 13)	intron (NM_001361248, intron 4 of 13)	49193.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.81	1.51	5.7	2.41	5.73	3.14	5.98	5.19	0.2	0.0	0.5	0.0
Merged-chr18-67931951-1	chr18	67931851	67932051	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.83	3.02	2.28	2.41	3.68	2.82	5.65	4.71	1.57	1.51	3.52	7.21
Merged-chr11-29796805-1	chr11	29796705	29796905	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 21 of 41)	RodERV21-int|LTR|ERV1	28863.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	1.62	0.5	0.0	1.61	2.45	2.82	4.98	12.59	1.97	1.0	2.51	0.31
Merged-chr7-141294869-1	chr7	141294769	141294969	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007878, exon 4 of 4)	3' UTR (NM_007878, exon 4 of 4)	2863.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	6.46	5.28	3.99	7.24	8.18	3.76	4.65	5.97	6.29	6.53	7.54	5.01
Merged-chr1-80627003-2	chr1	80626896	80627096	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	38356.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	9.69	2.26	3.42	3.22	11.05	9.72	4.98	8.3	8.85	9.54	9.04	3.13
Merged-chr1-127322449-1	chr1	127322349	127322549	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 4 of 17)	(TG)n|Simple_repeat|Simple_repeat	117463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.25	6.04	5.13	4.83	4.5	4.08	1.33	9.42	12.39	6.53	6.53	8.46
Merged-chr7-63906676-1	chr7	63906576	63906776	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	Lx8|LINE|L1	-10181.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.02	1.01	3.42	3.22	7.36	1.88	1.99	5.78	4.52	6.53	8.04	3.45
Merged-chr7-123205498-1	chr7	123205398	123205598	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9368.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	6.06	6.04	3.42	2.82	11.45	2.51	3.32	4.74	10.03	7.03	6.03	9.4
Merged-chr2-16111353-1	chr2	16111253	16111453	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 32 of 38)	RLTR26_Mus|LTR|ERVK	-244951.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.81	0.5	2.85	2.41	8.59	4.08	1.66	4.54	3.74	1.0	3.01	4.39
Merged-chr12-102702704-1	chr12	102702604	102702804	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	2165.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.85	4.02	3.99	7.24	11.05	5.64	2.99	6.2	6.69	6.53	8.04	5.64
Merged-chr5-23908845-1	chr5	23908745	23908945	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56612.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.0	0.0	1.14	0.0	5.32	6.27	6.31	7.32	2.75	1.0	0.5	0.0
Merged-chr19-55662331-1	chr19	55662231	55662431	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	39873.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	2.02	0.0	1.14	0.8	1.23	0.63	6.64	2.02	2.56	0.5	2.01	2.19
Merged-chr16-32333367-1	chr16	32333267	32333467	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177633, intron 1 of 10)	UCON11|Unknown|Unknown	1115.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	2.42	6.54	4.56	1.61	5.73	4.08	3.65	5.05	9.64	1.0	5.53	2.19
Merged-chr13-3908401-1	chr13	3908301	3908501	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019671, intron 2 of 11)	intron (NM_019671, intron 2 of 11)	9819.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	4.04	1.51	1.71	0.8	2.05	7.53	1.33	5.55	3.34	1.0	9.04	3.13
Merged-chr11-16623832-1	chr11	16623732	16623932	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-115348.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	6.46	1.76	0.0	4.02	1.64	0.63	6.31	5.83	7.28	3.51	7.03	2.51
Merged-chr1-93576305-1	chr1	93576205	93576405	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	59422.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	1.21	4.02	12.55	10.46	5.32	0.63	0.33	4.01	3.15	1.0	2.51	2.19
Merged-chr19-16009414-1	chr19	16009314	16009514	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	MTD|LTR|ERVL-MaLR	24339.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.85	3.52	2.28	2.01	4.5	4.7	6.64	6.22	5.9	6.53	5.53	5.33
Merged-chr6-128736326-1	chr6	128736226	128736426	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13280.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	3.63	1.76	0.0	2.41	5.32	4.39	1.66	6.56	4.13	0.5	3.01	2.19
Merged-chr6-90607400-1	chr6	90607300	90607500	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	2520.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.81	0.75	2.28	1.21	5.32	10.03	5.98	5.83	5.9	6.03	5.53	3.76
Merged-chr10-99166634-1	chr10	99166534	99166734	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58499.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	2.42	3.77	10.27	0.8	9.41	0.63	0.33	5.66	0.79	1.0	5.02	2.19
Merged-chr15-4000773-1	chr15	4000673	4000873	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045740, intron 2 of 2)	L1MD2|LINE|L1	4734.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0.4	1.51	1.14	4.02	4.91	5.64	6.31	5.61	3.93	10.54	6.53	2.19
Merged-chr1-165735020-1	chr1	165734920	165735120	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26926.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	2.42	2.77	1.71	1.61	6.55	5.33	1.66	5.16	7.87	6.03	5.53	4.7
Merged-chr11-109471523-1	chr11	109471423	109471623	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	1706.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	6.06	3.52	2.28	6.84	5.32	2.82	3.65	3.84	1.97	4.02	1.51	4.07
Merged-chr17-86249549-1	chr17	86249449	86249649	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	37629.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	1.62	2.77	0.57	0.4	1.64	4.39	3.65	1.21	0.39	1.51	0.0	1.25
Merged-chr5-21328765-1	chr5	21328665	21328865	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-43908.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	1.62	3.77	6.85	9.65	7.36	4.08	1.33	5.69	9.05	5.52	7.54	6.89
Merged-chr13-118478562-1	chr13	118478462	118478662	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77606.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	0.0	0.0	0.0	0.8	0.0	0.0	0.0	0.11	3.93	0.0	2.51	3.76
Merged-chr5-74961318-2	chr5	74961215	74961415	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	12121.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.23	6.79	1.14	2.41	4.09	6.59	4.65	5.89	7.28	5.52	10.05	4.07
Merged-chr2-163590336-1	chr2	163590236	163590436	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11978.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.4	1.76	3.42	0.8	7.36	1.57	5.98	4.4	3.34	3.01	6.03	1.57
Merged-chr8-39426913-1	chr8	39426813	39427013	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	128933.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	2.02	2.52	0.0	2.01	5.73	3.45	1.0	4.82	0.79	0.0	0.5	0.31
Merged-chr13-119488969-1	chr13	119488869	119489069	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	109.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	20.19	13.33	10.84	13.27	13.09	15.99	11.63	27.34	25.57	21.09	23.62	18.17
Merged-chr1-173673634-1	chr1	173673534	173673734	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162938)	promoter-TSS (NM_001162938)	-46.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	0.0	0.0	0.0	0.0	2.45	2.2	1.66	1.32	5.9	5.52	12.06	8.14
Merged-chr2-79774610-2	chr2	79774513	79774713	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290743, intron 4 of 4)	intron (NM_001290743, intron 4 of 4)	66833.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	1.62	3.77	1.71	6.84	3.68	1.88	4.98	6.2	6.1	2.01	17.08	7.83
Merged-chr1-127225876-1	chr1	127225776	127225976	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20890.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	1.62	3.27	1.14	5.63	5.73	4.08	4.65	5.36	5.31	4.02	1.0	6.27
Merged-chr15-65810952-1	chr15	65810852	65811052	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133766, intron 1 of 22)	intron (NM_133766, intron 1 of 22)	23932.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	4.04	5.03	1.71	4.83	0.82	2.2	5.31	5.92	5.31	4.02	5.02	4.7
Merged-chr16-29561080-1	chr16	29560980	29561180	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16216.0	NM_001164613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.0	4.02	2.28	3.22	4.91	6.59	1.99	3.7	7.28	5.02	7.03	6.89
Merged-chr17-28716312-1	chr17	28716212	28716412	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168513, intron 3 of 11)	MTE2a|LTR|ERVL-MaLR	23744.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.04	1.01	4.56	1.21	4.5	6.9	5.98	10.18	2.56	3.01	4.02	1.57
Merged-chr1-54911611-1	chr1	54911511	54911711	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	14776.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.81	0.5	1.14	1.61	2.45	0.63	0.66	0.28	2.16	2.01	4.02	1.57
Merged-chr10-81016828-3	chr10	81016756	81016956	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1931.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	9.29	7.8	5.7	3.62	10.23	9.09	3.32	6.17	8.06	8.54	8.04	10.65
Merged-chr8-127979570-1	chr8	127979470	127979670	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	298655.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.83	5.03	7.99	6.03	2.05	5.02	5.31	2.58	7.87	8.03	10.55	7.52
Merged-chr10-128343703-1	chr10	128343603	128343803	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	5976.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	4.44	6.04	7.99	8.04	8.18	6.27	7.64	6.95	8.06	7.53	3.52	5.01
Merged-chr7-132304539-1	chr7	132304439	132304639	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-11125.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	6.06	4.53	3.42	4.42	4.09	9.72	2.66	3.14	6.88	5.02	13.57	8.77
Merged-chr10-79874530-2	chr10	79874417	79874617	+	639.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033210, exon 1 of 6)	non-coding (NR_033210, exon 1 of 6)	117.0	NM_181681	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	7.67	14.34	3.42	10.86	9.0	9.41	7.97	7.85	8.06	10.04	5.53	9.4
Merged-chr11-46813372-2	chr11	46813275	46813475	+	639.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 1 of 8)	B3|SINE|B2	2576.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.27	8.05	10.27	0.0	2.45	4.7	5.65	4.15	10.62	8.03	12.06	5.01
Merged-chr7-45621657-2	chr7	45621516	45621716	+	639.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001018013)	promoter-TSS (NM_001018013)	-195.0	NM_001018013	73456.0	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	2.83	3.77	0.0	1.21	4.5	6.27	3.32	3.36	6.88	5.02	3.01	5.33
Merged-chr8-117577270-1	chr8	117577170	117577370	+	639.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 9 of 32)	ORR1E|LTR|ERVL-MaLR	78995.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.42	0.75	2.28	6.44	7.36	5.64	3.65	4.74	4.52	8.54	6.03	6.27
Merged-chr4-119005163-3	chr4	119005072	119005272	+	639.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43205.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	7.67	4.28	5.13	0.8	6.95	10.35	7.64	4.93	18.49	13.05	11.05	10.65
Merged-chr10-82696728-3	chr10	82696668	82696868	+	639.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2239.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	3.23	2.52	5.7	1.21	6.55	2.51	1.99	3.93	4.52	7.53	4.02	3.13
Merged-chr5-120102959-3	chr5	120102861	120103061	+	639.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13552.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	9.69	8.05	10.84	5.63	13.5	14.42	5.31	6.22	10.82	12.05	9.04	5.95
Merged-chr11-121652664-1	chr11	121652564	121652764	+	639.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	20487.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	6.06	6.04	5.13	0.8	4.09	7.53	5.31	6.14	6.29	7.03	5.53	5.95
Merged-chr5-146810845-2	chr5	146810753	146810953	+	639.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15897.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.08	3.27	6.85	2.82	7.36	4.39	4.98	6.08	8.85	9.54	9.04	7.21
Merged-chr11-87073487-2	chr11	87073403	87073603	+	639.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025638, intron 1 of 9)	intron (NM_025638, intron 1 of 9)	634.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	7.27	5.28	4.56	3.22	6.55	8.15	4.98	6.42	8.26	11.55	4.02	4.7
Merged-chr12-85608246-3	chr12	85608145	85608345	+	639.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030887, exon 2 of 4)	exon (NM_030887, exon 2 of 4)	8227.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.27	9.31	6.85	7.64	20.46	11.92	15.28	6.87	12.19	3.51	9.55	5.33
Merged-chr17-56298622-3	chr17	56298515	56298715	+	639.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029799, intron 1 of 2)	B2_Mm2|SINE|B2	1671.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	8.08	5.28	8.56	8.04	5.73	11.29	3.99	7.54	12.0	10.04	8.04	8.14
Merged-chr18-66469469-1	chr18	66469369	66469569	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	10865.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	2.83	4.02	3.42	0.8	8.18	9.09	3.99	5.55	5.7	7.53	9.04	5.01
Merged-chr2-79265839-2	chr2	79265748	79265948	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	10422.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.23	6.29	5.13	4.42	10.23	8.15	1.33	4.74	12.0	4.52	10.05	8.77
Merged-chr8-123323618-2	chr8	123323518	123323718	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5042.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	10.5	7.8	1.14	4.02	2.86	5.96	2.99	5.5	8.06	16.57	9.55	7.52
Merged-chr5-5275550-2	chr5	5275458	5275658	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-9490.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.88	10.82	2.85	6.03	6.14	9.41	4.32	3.11	13.96	29.12	9.55	4.39
Merged-chr13-93240988-3	chr13	93240875	93241075	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48558.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	3.63	6.54	6.28	6.44	14.73	8.78	4.98	4.63	11.01	10.54	9.04	6.27
Merged-chr11-97841236-2	chr11	97841141	97841341	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080935, intron 1 of 2)	intron (NM_001080935, intron 1 of 2)	461.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.63	3.77	2.28	2.82	2.86	3.45	2.33	4.32	9.05	14.56	9.04	3.45
Merged-chr10-75954605-2	chr10	75954498	75954698	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198635)	promoter-TSS (NM_198635)	84.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	2.42	2.26	5.7	0.8	7.77	5.96	0.66	8.21	6.88	8.54	7.54	4.7
Merged-chr14-54482713-2	chr14	54482613	54482813	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	6613.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	9.69	9.06	5.13	2.41	6.14	5.02	3.65	7.01	6.1	8.03	4.52	1.57
Merged-chr16-31024497-2	chr16	31024387	31024587	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56945.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.83	1.51	5.7	6.84	11.05	4.08	3.99	6.14	10.62	13.56	10.05	3.45
Merged-chr19-57079757-2	chr19	57079654	57079854	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178688, intron 8 of 24)	intron (NM_178688, intron 8 of 24)	39270.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	10.5	8.05	9.13	8.45	0.0	0.0	1.99	0.0	8.26	4.52	15.58	10.96
Merged-chr3-97338954-2	chr3	97338837	97339037	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72242.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	4.04	4.28	6.85	6.44	7.77	5.64	2.33	4.68	3.15	8.54	10.05	4.39
Merged-chr12-100538613-2	chr12	100538523	100538723	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17801.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.63	2.01	2.28	4.42	6.95	10.66	2.99	6.73	7.67	18.08	8.04	7.21
Merged-chr11-96314927-1	chr11	96314827	96315027	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2238.0	NR_029784	723893.0		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	2.42	3.52	1.14	2.41	5.73	5.64	3.32	5.78	3.74	4.52	2.51	5.01
Merged-chr5-147435537-1	chr5	147435437	147435637	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	5381.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	1.62	0.75	2.28	6.44	4.09	9.09	5.65	5.19	1.97	3.51	5.02	0.63
Merged-chr7-44753010-3	chr7	44752912	44753112	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133945, intron 2 of 14)	ORR1E|LTR|ERVL-MaLR	4383.0	NM_133945	101568.0	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	10.9	16.1	9.7	4.42	12.68	20.38	8.97	7.09	7.87	14.06	10.05	0.63
Merged-chr1-16621357-2	chr1	16621261	16621461	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2023.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	10.5	2.52	2.28	1.61	9.82	9.41	5.65	7.63	16.13	3.51	7.54	7.21
Merged-chr6-134266946-1	chr6	134266846	134267046	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129383.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.23	6.29	7.99	6.03	11.45	6.9	2.66	5.92	1.38	2.01	3.52	0.31
Merged-chr18-46430426-2	chr18	46430324	46430524	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35392.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.4	4.28	7.99	4.83	8.59	5.02	7.97	5.41	10.42	8.03	8.54	8.14
Merged-chr10-60757217-2	chr10	60757123	60757323	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4441.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.44	9.31	6.85	11.26	12.68	11.92	4.98	6.34	9.24	7.53	8.54	6.58
Merged-chr1-134561202-2	chr1	134561092	134561292	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152895, intron 1 of 26)	CpG	1014.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	4.85	6.04	5.7	4.42	2.05	5.33	2.99	4.91	8.06	7.03	2.01	5.01
Merged-chr14-67935599-2	chr14	67935518	67935718	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2046.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	2.42	8.3	3.99	15.28	2.45	10.98	8.97	4.65	6.88	15.57	7.54	3.45
Merged-chr1-171841545-1	chr1	171841445	171841645	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	1848.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	1.62	5.79	2.28	0.0	4.91	4.39	4.32	4.35	6.69	7.03	3.52	2.82
Merged-chr7-126585699-3	chr7	126585605	126585805	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	112.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	10.9	6.54	5.7	5.63	14.73	4.7	7.97	7.79	6.49	16.57	5.53	5.95
Merged-chr6-17646217-2	chr6	17646115	17646315	+	639.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	9205.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.44	7.55	3.42	2.41	7.77	3.14	5.98	6.36	7.87	13.56	11.05	7.52
Merged-chr17-48198599-2	chr17	48198497	48198697	+	639.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31340.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	2.02	4.53	1.14	0.8	2.86	3.45	10.63	4.99	6.49	26.11	13.06	6.58
Merged-chr13-94058036-2	chr13	94057941	94058141	+	639.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	CpG	245.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	7.27	4.78	9.7	3.62	6.14	4.7	4.65	5.75	3.93	6.03	5.02	3.45
Merged-chr5-125330304-1	chr5	125330204	125330404	+	639.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	10790.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.27	5.53	7.42	8.45	9.0	11.6	7.64	3.93	4.72	7.03	3.52	5.01
Merged-chr14-14348929-3	chr14	14348852	14349052	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 4 of 11)	intron (NM_008369, intron 4 of 11)	2457.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	8.08	7.04	7.42	12.47	8.18	4.39	4.98	6.22	7.08	8.03	1.51	10.65
Merged-chr3-86224764-3	chr3	86224645	86224845	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	55.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	4.85	5.28	4.56	8.85	10.23	10.03	2.66	10.43	8.06	7.03	9.04	9.08
Merged-chr9-111295517-1	chr9	111295417	111295617	+	639.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-16222.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.81	2.01	5.13	2.82	2.86	3.45	1.0	2.16	7.28	10.54	13.57	6.27
Merged-chr6-135249946-3	chr6	135249856	135250056	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-2072.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	9.29	6.29	10.27	10.05	11.45	15.37	7.97	9.53	6.49	11.05	9.04	10.02
Merged-chr1-128723898-1	chr1	128723798	128723998	+	639.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-131599.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.63	3.02	2.85	1.61	6.95	11.6	3.99	6.87	11.41	4.02	6.53	1.25
Merged-chr2-167257359-3	chr2	167257260	167257460	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16823.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.85	6.54	11.41	10.05	4.91	5.33	5.31	3.28	15.34	11.55	10.55	5.33
Merged-chr4-111328219-2	chr4	111328124	111328324	+	639.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284190, intron 5 of 12)	intron (NM_001284190, intron 5 of 12)	-86782.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	2.42	7.55	11.98	6.44	5.32	5.64	0.66	6.22	6.88	2.51	9.04	5.64
Merged-chr1-105748527-1	chr1	105748427	105748627	+	639.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-32196.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	8.08	4.53	3.42	3.22	10.64	5.33	6.31	3.08	8.06	8.54	6.53	5.33
Merged-chr15-36167881-3	chr15	36167774	36167974	+	639.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2990.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	4.85	10.82	2.85	9.65	6.95	5.33	2.99	6.95	7.67	10.54	8.54	6.27
Merged-chr10-17344035-2	chr10	17343935	17344135	+	639.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-248253.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.85	2.52	9.7	8.85	13.91	8.15	5.65	6.7	13.77	11.05	13.57	3.45
Merged-chr7-28972874-3	chr7	28972754	28972954	+	639.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028659, intron 6 of 7)	intron (NM_028659, intron 6 of 7)	9034.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	12.52	5.79	2.85	3.62	2.05	10.66	4.65	5.92	10.82	12.55	5.53	5.95
Merged-chr16-32179646-3	chr16	32179525	32179725	+	639.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033539)	promoter-TSS (NM_001033539)	-175.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	6.46	6.54	7.42	4.83	10.23	5.64	6.31	4.6	10.62	7.03	9.04	8.14
Merged-chr10-127229096-3	chr10	127229006	127229206	+	639.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008447)	TTS (NM_008447)	-17484.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	6.86	7.8	4.56	4.02	3.68	6.59	2.33	6.64	11.41	10.54	10.55	9.71
Merged-chr11-98747516-3	chr11	98747381	98747581	+	639.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5696.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	4.85	7.55	6.28	4.83	7.77	11.29	7.31	5.5	8.06	11.55	13.06	8.46
Merged-chr2-31165163-3	chr2	31165066	31165266	+	639.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178760, intron 1 of 17)	L1MEd|LINE|L1	12850.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	8.88	14.09	7.42	2.01	13.5	15.37	5.98	4.79	6.88	6.03	5.53	5.95
Merged-chr18-80220606-1	chr18	80220506	80220706	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025299, intron 3 of 3)	MLT1C-int|LTR|ERVL-MaLR	13739.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	2.02	2.26	6.28	9.65	3.68	4.08	6.31	14.78	0.79	0.0	0.0	0.31
Merged-chr11-35839152-1	chr11	35839052	35839252	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_170779)	TTS (NM_170779)	-4624.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.81	1.51	3.42	3.22	5.32	4.7	1.33	8.83	14.55	7.03	2.51	9.08
Merged-chr6-72165887-1	chr6	72165787	72165987	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-42690.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	1.62	3.52	3.42	2.41	8.18	2.2	4.32	7.91	8.26	6.53	9.55	9.08
Merged-chr8-64849526-1	chr8	64849426	64849626	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178633, intron 1 of 14)	CpG	398.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	6.46	4.53	1.71	2.82	6.14	5.33	6.98	7.01	7.67	6.53	6.53	5.95
Merged-chr1-125427118-1	chr1	125427018	125427218	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	8609.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.04	5.28	3.42	4.83	7.77	9.09	2.66	5.13	8.46	16.07	2.51	4.39
Merged-chr7-101873340-1	chr7	101873240	101873440	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-2552.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	3.23	1.01	3.42	2.82	8.59	6.27	3.65	6.48	3.74	5.52	12.06	2.19
Merged-chr7-99136337-1	chr7	99136237	99136437	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	MER21C|LTR|ERVL	4807.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.06	5.03	8.56	2.41	7.77	6.9	2.99	5.52	2.16	6.53	1.0	2.19
Merged-chr9-64020491-1	chr9	64020391	64020591	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008542, exon 1 of 4)	exon (NM_008542, exon 1 of 4)	1568.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	2.83	6.04	2.85	9.25	1.64	1.88	1.33	3.93	4.72	4.02	5.53	3.45
Merged-chr9-14501195-1	chr9	14501095	14501295	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173433)	promoter-TSS (NM_173433)	576.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	4.04	3.77	2.28	2.41	1.23	7.84	2.66	5.24	4.92	8.54	8.54	2.51
Merged-chr12-84751821-1	chr12	84751721	84751921	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	21291.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.25	7.8	12.55	1.61	6.55	1.88	3.65	2.92	10.62	5.02	2.51	14.72
Merged-chr1-66701658-2	chr1	66701529	66701729	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310642, exon 2 of 7)	exon (NM_001310642, exon 2 of 7)	798.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	1.62	0.75	0.57	4.83	0.82	4.7	1.99	4.26	5.9	9.54	12.56	5.33
Merged-chr13-93497115-1	chr13	93497015	93497215	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021310, intron 1 of 10)	intron (NM_021310, intron 1 of 10)	2693.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	6.86	2.52	7.99	5.23	4.91	1.88	4.32	8.16	8.65	2.01	5.53	7.83
Merged-chr1-171579742-1	chr1	171579642	171579842	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 6 of 8)	intron (NM_018729, intron 6 of 8)	20549.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	2.02	4.53	1.14	7.64	4.09	5.64	3.32	6.08	1.38	1.51	4.52	2.82
Merged-chr10-43828594-1	chr10	43828494	43828694	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131055, intron 1 of 2)	RMER20C_Mm|LTR|ERVK	2687.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	2.77	0.0	0.0	3.27	5.96	5.65	6.5	0.98	2.51	1.0	0.0
Merged-chr10-56751724-1	chr10	56751624	56751824	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	319743.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	4.85	3.77	5.13	3.22	4.09	5.33	5.98	7.18	5.7	12.05	6.03	7.21
Merged-chr2-118391400-1	chr2	118391300	118391500	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	2288.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	3.63	7.8	0.0	2.41	3.68	6.59	1.33	4.6	4.13	5.52	2.51	4.39
Merged-chr10-81341762-1	chr10	81341662	81341862	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148951, intron 1 of 5)	intron (NM_148951, intron 1 of 5)	1504.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	10.5	3.02	6.85	1.61	2.86	8.78	0.66	4.68	5.11	3.51	6.03	5.01
Merged-chr11-101919834-1	chr11	101919734	101919934	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25480.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	8.88	2.77	3.42	1.61	6.14	7.53	1.33	5.8	11.6	4.52	2.51	3.76
Merged-chr5-144277438-1	chr5	144277338	144277538	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040432, intron 1 of 2)	intron (NR_040432, intron 1 of 2)	377.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	5.65	3.52	4.56	6.84	6.55	6.27	3.99	6.64	2.75	0.0	6.03	3.45
Merged-chr16-12497251-1	chr16	12497151	12497351	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-314139.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.5	0.0	0.0	0.82	3.76	5.98	5.64	2.56	4.02	6.03	2.19
Merged-chr16-57552924-2	chr16	57552782	57552982	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	3640.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.46	7.04	2.28	3.22	2.45	3.14	5.31	5.1	5.31	6.53	4.02	2.19
Merged-chr13-110972736-1	chr13	110972636	110972836	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68890.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	1.01	2.28	1.61	0.82	0.31	5.98	3.79	2.36	0.5	0.5	1.57
Merged-chr18-9509112-1	chr18	9509012	9509212	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58958.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.85	5.79	3.42	2.41	5.32	1.88	1.99	11.3	3.74	3.01	1.0	4.7
Merged-chr14-44146137-1	chr14	44146037	44146237	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	25234.0	NM_029131	74954.0	Mm.425904	NM_029131	ENSMUSG00000072595	4930503E14Rik	-	RIKEN cDNA 4930503E14 gene	protein-coding	6.06	1.26	9.7	5.23	4.5	0.94	5.31	1.79	11.01	4.02	9.55	5.64
Merged-chr15-67907225-2	chr15	67907098	67907298	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	351658.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.42	3.52	2.28	5.23	6.55	3.76	2.99	9.08	7.47	2.51	22.11	7.21
Merged-chr5-124859636-1	chr5	124859536	124859736	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144819, intron 1 of 3)	intron (NM_144819, intron 1 of 3)	2585.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	2.42	1.51	4.56	4.83	1.64	6.59	2.33	7.23	1.38	5.02	1.0	3.13
Merged-chr17-47743528-1	chr17	47743428	47743628	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	5597.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.85	4.53	4.56	5.23	1.23	4.7	5.65	6.84	6.29	0.5	1.51	4.39
Merged-chr3-65442417-1	chr3	65442317	65442517	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-49864.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.85	2.01	2.28	4.83	4.5	3.76	7.31	6.5	7.67	7.03	14.57	5.33
Merged-chr9-95582312-1	chr9	95582212	95582412	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22495.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.63	7.04	2.28	5.23	0.82	5.02	1.33	1.71	6.49	1.0	1.51	0.31
Merged-chr5-33983893-1	chr5	33983793	33983993	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033458, exon 2 of 4)	exon (NM_001033458, exon 2 of 4)	460.0	NM_001310546	381633.0	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	2.02	1.76	0.0	2.41	2.45	5.33	5.65	4.79	1.57	0.5	1.0	1.88
Merged-chr4-47080831-1	chr4	47080731	47080931	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11122.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	1.62	6.04	5.7	0.4	4.09	4.7	6.98	5.24	7.47	12.05	7.03	6.27
Merged-chr2-30132154-1	chr2	30132054	30132254	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1592.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	2.42	10.06	5.7	6.44	3.27	6.27	1.33	0.39	9.05	8.03	6.53	3.13
Merged-chr7-28294675-1	chr7	28294575	28294775	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007866, exon 7 of 9)	exon (NM_007866, exon 7 of 9)	-3489.0	NM_175033	280621.0	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	2.02	6.54	2.28	6.84	3.68	9.41	1.99	4.99	9.24	4.52	5.02	3.13
Merged-chr1-167212478-1	chr1	167212378	167212578	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72649.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	5.25	5.53	0.0	3.62	5.32	6.9	2.66	4.77	10.03	6.03	8.04	5.01
Merged-chr7-46739193-1	chr7	46739093	46739293	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	3787.0	NM_001357493	20208.0	Mm.148800	NM_009117	ENSMUSG00000074115	Saa1	Saa-1|Saa2	serum amyloid A 1	protein-coding	2.83	2.77	6.85	9.65	4.09	3.45	4.98	9.2	3.54	6.03	10.55	0.63
Merged-chr16-38106707-2	chr16	38106610	38106810	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-17450.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	1.62	2.01	12.55	4.83	4.91	4.7	6.98	7.09	7.28	9.54	9.04	2.82
Merged-chr18-60732178-1	chr18	60732078	60732278	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	L2b|LINE|L2	963.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	2.42	2.52	1.71	1.21	0.41	0.94	2.33	3.95	7.28	3.01	5.53	3.13
Merged-chr15-38289690-2	chr15	38289593	38289793	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10207.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.44	4.78	7.99	9.25	6.95	5.33	4.32	7.04	10.42	14.06	7.54	5.33
Merged-chr9-77821103-1	chr9	77821003	77821203	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	66568.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	1.51	1.71	3.22	6.95	1.25	5.31	4.29	0.59	2.01	3.52	2.19
Merged-chr9-45274358-1	chr9	45274258	45274458	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5209.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	5.65	4.28	5.13	2.41	9.82	10.35	4.98	5.66	4.92	5.02	2.51	4.7
Merged-chr9-108827653-2	chr9	108827566	108827766	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1621.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	10.5	7.04	3.42	4.83	6.14	6.27	1.33	4.77	6.29	4.52	5.53	4.7
Merged-chr15-36684916-1	chr15	36684816	36685016	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	2.83	1.01	2.28	3.62	5.32	9.41	1.66	5.27	3.54	2.01	1.0	4.39
Merged-chr13-60608632-1	chr13	60608532	60608732	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	6421.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.04	5.79	7.99	6.44	4.5	5.02	6.31	4.51	0.79	2.51	3.01	1.57
Merged-chr7-84604742-1	chr7	84604642	84604842	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010176, intron 1 of 13)	intron (NM_010176, intron 1 of 13)	1200.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	2.83	0.0	6.85	4.83	2.45	7.21	4.98	5.86	0.39	2.01	1.0	0.94
Merged-chr2-163048145-1	chr2	163048045	163048245	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6490.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	2.02	0.75	2.28	2.01	1.64	0.63	4.98	6.25	0.2	1.0	6.03	2.19
Merged-chr5-138683999-1	chr5	138683899	138684099	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	61140.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	0.4	2.77	7.99	3.22	6.14	4.7	4.98	6.06	3.54	2.51	3.01	8.77
Merged-chr17-34108475-1	chr17	34108375	34108575	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11425.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	2.02	6.29	6.85	3.22	3.68	6.59	1.99	1.49	4.33	5.02	0.5	0.94
Merged-chr12-99306452-1	chr12	99306352	99306552	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	143622.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.4	2.52	9.13	4.42	4.91	4.7	1.0	6.36	4.52	3.01	6.53	1.57
Merged-chr4-133929457-1	chr4	133929357	133929557	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	38534.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	2.02	1.51	4.56	4.83	0.82	9.72	4.65	1.99	15.34	8.03	1.0	3.13
Merged-chr17-34970034-1	chr17	34969934	34970134	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	2122.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	8.48	4.78	0.0	0.0	0.82	5.64	0.66	2.89	6.29	5.52	2.01	2.51
Merged-chr2-30469914-1	chr2	30469814	30470014	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4285.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	6.06	3.52	4.56	3.62	5.32	5.96	3.99	3.87	4.72	11.05	6.03	3.13
Merged-chr1-191421810-2	chr1	191421750	191421950	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24809.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	2.42	2.26	3.99	2.41	4.91	1.88	2.66	5.13	8.65	6.03	4.52	5.64
Merged-chr11-31948123-1	chr11	31948023	31948223	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17510.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	4.85	5.03	6.85	2.41	8.18	1.88	0.66	4.82	5.31	3.51	4.52	3.76
Merged-chr4-142005554-2	chr4	142005441	142005641	+	638.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	6110.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	10.5	2.52	9.13	8.04	10.64	8.78	4.32	5.13	16.52	9.04	4.02	8.14
Merged-chr11-76088651-3	chr11	76088559	76088759	+	638.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026664, intron 13 of 21)	intron (NM_026664, intron 13 of 21)	-60877.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	10.5	6.54	10.27	4.83	9.41	18.81	12.62	5.44	9.64	3.51	13.57	5.01
Merged-chr8-95887863-2	chr8	95887739	95887939	+	638.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	526.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	4.44	3.77	1.14	5.23	8.59	8.78	14.28	5.33	11.41	2.51	11.05	8.77
Merged-chr16-10489760-2	chr16	10489634	10489834	+	638.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-47.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	9.69	3.02	4.56	4.83	9.41	4.08	4.98	7.12	9.05	5.52	10.05	4.7
Merged-chr15-76818712-3	chr15	76818642	76818842	+	638.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-572.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	7.27	8.05	10.84	3.62	11.45	5.02	3.32	6.36	8.06	2.51	9.04	6.89
Merged-chr7-67227383-5	chr7	67227303	67227503	+	638.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	4787.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	1.21	0.75	3.42	2.41	1.64	3.14	9.3	3.76	7.28	4.02	4.52	5.33
Merged-chr9-40241521-3	chr9	40241355	40241555	+	638.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27761.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.42	2.77	1.71	2.01	4.5	2.51	3.99	3.76	5.7	4.52	4.02	6.58
Merged-chr17-87143306-2	chr17	87143212	87143412	+	638.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35633.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	6.06	7.04	6.28	12.07	5.32	9.72	2.33	7.4	2.56	0.5	4.52	2.51
Merged-chr17-63430547-2	chr17	63430452	63430652	+	638.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	MTEa|LTR|ERVL-MaLR	70028.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	7.67	2.77	7.99	10.05	9.0	8.47	10.96	8.97	4.13	10.04	1.51	1.88
Merged-chr7-130762787-1	chr7	130762687	130762887	+	638.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11282.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	6.46	4.28	3.42	5.23	6.14	5.02	5.98	3.06	12.19	2.51	11.05	6.89
Merged-chr2-58163623-1	chr2	58163523	58163723	+	638.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045895)	promoter-TSS (NR_045895)	-351.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	2.83	1.76	3.42	3.22	6.14	5.33	11.63	5.21	2.75	6.53	11.05	1.25
Merged-chr5-151344970-3	chr5	151344872	151345072	+	638.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23703.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	5.25	7.04	5.7	10.46	3.68	6.27	1.66	9.11	8.65	11.05	8.54	9.4
Merged-chr17-27643347-2	chr17	27643246	27643446	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8104.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	5.65	8.8	9.7	8.04	1.23	4.39	5.31	5.21	11.01	3.51	17.59	6.58
Merged-chr11-113437584-1	chr11	113437484	113437684	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	128231.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	1.62	0.25	5.7	0.0	5.73	5.02	5.65	7.88	0.2	5.02	0.0	0.63
Merged-chr17-33997983-1	chr17	33997883	33998083	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	2350.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	7.27	7.29	14.83	5.63	5.32	3.76	3.32	0.39	6.88	6.03	9.55	4.07
Merged-chr18-61938451-1	chr18	61938351	61938551	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14624.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.65	4.02	5.7	2.41	2.45	7.21	2.66	4.46	5.7	6.53	7.03	5.33
Merged-chr1-139424087-2	chr1	139423990	139424190	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172643, exon 2 of 11)	exon (NM_172643, exon 2 of 11)	1707.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	5.65	7.55	1.71	10.05	2.45	3.45	4.65	3.31	8.65	9.54	12.06	4.39
Merged-chr16-94269827-2	chr16	94269715	94269915	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 2 of 10)	intron (NM_001360045, intron 2 of 10)	20476.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	2.02	5.03	1.14	0.8	1.64	5.96	1.66	6.11	9.44	8.54	10.05	6.58
Merged-chr1-92935888-2	chr1	92935793	92935993	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1485.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	2.83	2.77	7.42	2.01	6.55	9.41	3.65	1.15	12.39	2.51	6.03	9.71
Merged-chr3-54360369-2	chr3	54360291	54360491	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	-716.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.85	1.01	1.71	2.41	2.05	1.25	3.99	3.34	3.74	15.57	11.56	7.83
Merged-chr5-100671578-2	chr5	100671477	100671677	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027978, intron 1 of 6)	intron (NM_027978, intron 1 of 6)	2679.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	9.29	5.53	10.27	3.22	9.82	9.09	5.98	5.05	8.06	6.03	6.03	5.01
Merged-chr17-24758291-1	chr17	24758191	24758391	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357340, exon 3 of 3)	exon (NM_001357340, exon 3 of 3)	5303.0	NM_001357340	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	6.06	5.28	2.28	1.61	9.41	4.7	3.99	4.96	1.18	3.01	1.51	0.63
Merged-chr9-65557183-2	chr9	65557065	65557265	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 5 of 5)	intron (NM_153119, intron 5 of 5)	22922.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.88	4.28	0.0	2.41	7.77	1.88	2.33	2.66	8.65	9.54	2.01	4.07
Merged-chr16-27457483-2	chr16	27457377	27457577	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	68521.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	10.9	1.01	6.28	8.04	5.32	6.9	1.66	4.79	7.28	12.55	6.03	4.07
Merged-chr16-44833330-1	chr16	44833230	44833430	+	638.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207244, exon 4 of 6)	exon (NM_207244, exon 4 of 6)	12602.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	6.46	6.79	6.85	3.62	3.27	2.51	3.32	2.58	15.54	9.04	6.53	7.52
Merged-chr9-50584830-1	chr9	50584730	50584930	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	19019.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	3.63	3.27	4.56	4.02	3.68	5.64	5.65	5.13	4.13	0.5	5.53	1.25
Merged-chr11-75071520-1	chr11	75071420	75071620	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	B3|SINE|B2	-5529.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	4.04	3.02	4.56	3.22	1.64	5.33	6.98	5.02	3.93	6.53	7.54	4.39
Merged-chr9-66542926-3	chr9	66542846	66543046	+	638.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144937, intron 6 of 14)	ID_B1|SINE|B4	-28353.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	8.88	7.04	5.7	2.01	6.95	6.9	3.99	5.89	4.72	11.05	7.03	7.21
Merged-chr5-34773581-3	chr5	34773458	34773658	+	638.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010414, intron 1 of 66)	RMER1B|Other|Other	11818.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	7.67	5.28	6.28	6.03	11.45	7.21	4.65	4.23	11.21	10.04	11.56	7.52
Merged-chr8-95067722-2	chr8	95067599	95067799	+	638.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042715, intron 7 of 17)	intron (NM_001042715, intron 7 of 17)	12596.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	4.04	4.28	5.7	4.42	6.55	7.84	3.99	4.23	10.23	8.03	10.05	7.52
Merged-chr4-119806745-2	chr4	119806652	119806852	+	638.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7926.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	12.11	4.53	14.26	14.88	1.64	5.64	3.65	6.73	7.67	5.52	8.54	3.45
Merged-chr7-46845177-3	chr7	46845041	46845241	+	638.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	-663.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	2.83	1.26	3.42	9.65	4.09	4.08	8.3	9.81	10.62	5.52	7.54	15.35
Merged-chr11-100816298-3	chr11	100816196	100816396	+	638.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	6274.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	7.67	5.28	7.99	0.4	9.41	5.96	4.65	8.44	11.41	9.04	14.57	6.58
Merged-chr4-9780368-3	chr4	9780269	9780469	+	638.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	9784.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	3.63	5.53	9.7	2.01	2.86	5.33	5.98	9.45	7.08	2.01	11.05	10.34
Merged-chr14-66953308-1	chr14	66953208	66953408	+	638.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42100.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	5.65	4.28	5.7	4.02	6.14	5.64	5.98	6.76	6.1	9.54	18.09	5.01
Merged-chr9-50443936-3	chr9	50443881	50444081	+	638.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50544.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	6.86	6.79	7.42	5.63	9.0	7.84	7.31	7.57	4.33	10.04	13.57	5.33
Merged-chr15-7226441-2	chr15	7226336	7226536	+	638.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289496, intron 17 of 22)	intron (NM_001289496, intron 17 of 22)	85894.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	9.29	3.27	7.99	6.84	3.68	9.09	1.0	9.14	11.21	4.02	8.04	5.01
Merged-chr5-28294183-2	chr5	28294074	28294274	+	638.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23015.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	7.67	3.52	15.97	4.42	12.68	2.82	4.32	6.08	10.03	7.53	11.56	4.39
Merged-chr5-151086582-2	chr5	151086469	151086669	+	638.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 3 of 13)	intron (NR_153382, intron 3 of 13)	103624.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.04	2.01	3.42	3.62	4.5	5.02	8.97	6.64	6.49	13.56	8.04	5.01
Merged-chr12-12247279-3	chr12	12247201	12247401	+	638.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-14838.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.67	9.06	3.42	8.45	3.68	6.27	4.32	5.94	11.6	13.05	10.55	7.21
Merged-chr2-24315645-3	chr2	24315536	24315736	+	638.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-21224.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	8.48	2.01	14.83	9.25	7.36	8.15	4.65	8.47	8.85	7.53	9.55	6.58
Merged-chr3-94891514-3	chr3	94891422	94891622	+	638.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-4564.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	4.85	6.29	3.42	2.41	3.27	5.64	4.98	2.41	3.93	5.52	8.54	3.45
Merged-chr1-168362664-2	chr1	168362568	168362768	+	638.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69501.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	6.06	6.79	8.56	3.22	7.77	10.66	8.3	6.17	7.67	9.54	9.55	3.76
Merged-chr7-126694740-1	chr7	126694640	126694840	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029420, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1043.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	6.46	8.55	3.42	0.4	10.64	5.64	0.66	4.46	5.11	7.53	8.04	4.7
Merged-chr5-123699373-1	chr5	123699273	123699473	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027494, exon 14 of 14)	3' UTR (NM_027494, exon 14 of 14)	-15012.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	3.23	4.02	3.42	7.64	7.36	4.7	4.65	6.17	8.46	7.03	19.6	5.64
Merged-chr9-114793537-1	chr9	114793437	114793637	+	638.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-11544.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.83	1.76	0.0	1.61	0.82	1.25	1.0	2.05	6.1	10.54	8.04	13.16
Merged-chr7-35584755-1	chr7	35584655	35584855	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145840, exon 1 of 1)	exon (NM_145840, exon 1 of 1)	827.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	3.23	4.28	5.7	2.01	11.05	1.88	4.32	5.52	4.13	2.01	2.01	4.39
Merged-chr1-143996827-1	chr1	143996727	143996927	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7322.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	9.29	6.54	7.42	2.41	5.32	6.9	4.65	1.15	4.13	4.02	1.51	4.7
Merged-chr7-19077313-1	chr7	19077213	19077413	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1113.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	6.06	3.77	3.42	0.0	2.86	1.57	0.66	3.14	15.14	7.53	10.55	8.46
Merged-chr10-128806964-1	chr10	128806864	128807064	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	1288.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	1.62	5.28	5.7	1.61	6.95	5.33	4.32	5.55	7.47	7.53	8.04	4.39
Merged-chr2-38512330-1	chr2	38512230	38512430	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	454.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	8.88	7.8	3.42	1.21	4.09	5.02	0.66	1.51	2.16	2.01	1.51	4.39
Merged-chr2-162999947-1	chr2	162999847	163000047	+	638.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013731, intron 10 of 13)	B3|SINE|B2	8532.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	4.04	3.52	4.56	5.63	2.86	3.45	1.66	3.95	14.16	2.01	5.53	8.46
Merged-chr13-44696258-1	chr13	44696158	44696358	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34516.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.63	3.02	6.85	6.03	5.73	8.15	2.66	7.68	6.88	0.0	6.53	4.7
Merged-chr15-84896408-1	chr15	84896308	84896508	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	-27020.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	2.42	0.25	1.71	0.0	7.77	7.53	5.31	7.04	5.31	7.03	6.03	0.0
Merged-chr13-34216815-1	chr13	34216715	34216915	+	638.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 4 of 10)	MTC-int|LTR|ERVL-MaLR	53851.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.4	0.25	0.57	0.0	0.41	0.0	0.0	0.0	9.24	5.52	10.55	4.07
Merged-chr1-150404014-1	chr1	150403914	150404114	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133780, exon 7 of 52)	exon (NM_133780, exon 7 of 52)	-10934.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	6.46	2.52	13.69	4.42	1.64	6.27	4.65	7.29	3.54	2.51	8.54	1.25
Merged-chr5-64812242-1	chr5	64812142	64812342	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8719.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.44	3.02	6.28	2.41	10.23	2.82	7.97	3.87	3.15	4.02	2.01	4.07
Merged-chr5-90592855-1	chr5	90592755	90592955	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	31646.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	2.83	0.5	2.28	0.0	1.64	0.63	5.65	5.38	1.38	0.5	3.01	0.31
Merged-chr16-20716754-2	chr16	20716655	20716855	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009900)	promoter-TSS (NM_009900)	-119.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	4.85	4.78	1.71	5.63	3.68	8.78	8.3	2.52	13.18	8.54	11.05	5.64
Merged-chr17-35700685-1	chr17	35700585	35700785	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001198833)	promoter-TSS (NM_001198833)	-95.0	NM_001198833	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	2.02	1.01	1.14	2.01	6.55	5.02	7.31	0.76	5.31	0.0	1.51	2.51
Merged-chr3-135206870-1	chr3	135206770	135206970	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5693.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	2.83	1.76	3.42	3.22	5.73	0.63	2.66	5.55	5.51	4.02	6.03	3.45
Merged-chr12-86833107-1	chr12	86833007	86833207	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51707.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	3.77	2.28	0.8	2.86	4.39	2.99	4.85	2.16	5.02	4.02	3.45
Merged-chr8-36998732-1	chr8	36998632	36998832	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126063, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	5157.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	0.4	1.01	2.28	0.8	9.0	1.25	2.99	7.01	0.59	1.0	3.01	3.13
Merged-chr12-116202812-1	chr12	116202712	116202912	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60213.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	6.86	4.78	0.0	4.02	3.68	6.59	3.65	5.27	3.74	6.03	6.03	6.27
Merged-chr7-126907968-1	chr7	126907868	126908068	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9690.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.0	0.5	0.0	0.0	6.14	2.2	1.0	4.21	7.08	7.03	4.52	4.07
Merged-chr3-59262307-3	chr3	59262205	59262405	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177855, exon 34 of 44)	exon (NM_177855, exon 34 of 44)	680.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	5.65	7.55	3.99	9.25	9.0	4.39	4.98	5.27	11.6	4.02	9.55	2.19
Merged-chr2-155099603-1	chr2	155099503	155099703	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040634, intron 1 of 2)	intron (NR_040634, intron 1 of 2)	476.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	4.85	1.76	6.28	3.62	6.95	4.39	7.64	10.49	9.24	5.52	7.03	4.7
Merged-chr1-59764770-3	chr1	59764643	59764843	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007561, intron 1 of 12)	intron (NM_007561, intron 1 of 12)	464.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	4.04	6.04	5.7	7.24	6.55	9.41	4.32	5.69	8.06	12.05	10.55	6.58
Merged-chr3-52404861-1	chr3	52404761	52404961	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112103.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	3.23	1.26	1.14	2.01	2.86	1.25	5.31	4.09	1.57	1.0	6.03	4.07
Merged-chr2-116980685-1	chr2	116980585	116980785	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80533.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.85	3.52	3.42	4.02	11.45	6.9	2.33	4.91	8.26	5.52	7.03	4.7
Merged-chr1-142894315-1	chr1	142894215	142894415	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-746382.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	1.21	0.5	0.0	1.61	1.64	5.33	2.33	5.83	0.39	0.0	2.01	0.63
Merged-chr9-114787329-2	chr9	114787179	114787379	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5286.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.42	1.51	3.42	4.02	6.95	10.03	1.66	3.95	6.29	11.55	10.55	4.7
Merged-chr11-87010629-2	chr11	87010513	87010713	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16851.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	3.63	8.05	1.14	4.83	8.18	7.53	1.99	4.99	4.72	1.51	6.53	5.01
Merged-chr11-5730065-1	chr11	5729965	5730165	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077661, intron 1 of 5)	L1MC4|LINE|L1	11111.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.63	10.56	11.98	1.61	2.45	4.7	4.65	2.36	8.06	1.51	7.03	3.76
Merged-chr18-25487593-1	chr18	25487493	25487693	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001362294, intron 10 of 12)	intron (NM_001362294, intron 10 of 12)	192155.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	9.69	5.79	13.69	6.03	17.59	6.27	11.29	11.44	15.93	7.53	15.07	8.14
Merged-chr10-71349009-1	chr10	71348909	71349109	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1246.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	4.44	5.03	3.42	6.03	6.55	5.33	7.31	10.74	2.95	9.04	4.52	5.95
Merged-chr9-109124435-1	chr9	109124335	109124535	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28999.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	2.42	3.02	2.28	0.0	2.45	0.0	4.32	5.19	0.39	3.01	1.51	0.0
Merged-chr16-58480224-1	chr16	58480124	58480324	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	43202.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	1.21	0.75	0.57	1.21	6.95	4.7	2.66	2.16	0.79	1.51	4.02	1.57
Merged-chr6-24647363-2	chr6	24647284	24647484	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	17611.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	6.46	2.52	4.56	6.03	3.68	7.21	2.99	7.57	11.21	7.53	7.03	5.64
Merged-chr15-38374884-1	chr15	38374784	38374984	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74173.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	2.02	2.01	7.99	2.82	6.55	4.7	5.98	6.39	6.88	2.01	2.01	5.01
Merged-chr1-189688848-1	chr1	189688748	189688948	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-762.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.81	2.52	0.0	0.4	2.05	4.7	5.65	4.93	0.79	5.02	0.0	2.19
Merged-chr1-71098141-2	chr1	71098044	71098244	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007525, intron 1 of 10)	MTD|LTR|ERVL-MaLR	4828.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	3.23	6.04	9.7	11.66	11.05	11.29	6.64	4.79	9.05	3.51	23.62	5.33
Merged-chr10-98708864-1	chr10	98708764	98708964	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-205778.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.63	2.01	6.85	2.82	8.18	1.57	3.32	4.85	2.16	2.51	6.03	0.94
Merged-chr12-24564640-1	chr12	24564540	24564740	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7647.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	9.69	3.52	13.69	6.44	1.64	4.39	4.65	4.49	6.49	4.02	10.05	6.27
Merged-chr2-58907013-1	chr2	58906913	58907113	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	151829.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	1.62	2.77	3.42	2.01	9.0	1.88	1.66	5.61	12.19	4.52	6.03	3.45
Merged-chr4-107067320-1	chr4	107067220	107067420	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	332.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0.4	5.28	5.13	4.83	4.5	4.39	1.66	5.16	6.88	4.02	5.02	5.33
Merged-chr10-99585089-1	chr10	99584989	99585189	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24082.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	4.04	2.26	0.0	3.22	17.59	6.59	2.66	6.79	12.0	4.52	6.03	2.82
Merged-chr10-67124404-1	chr10	67124304	67124504	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2854.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	2.83	3.02	3.42	0.8	4.09	5.64	5.31	4.15	5.31	2.51	3.01	0.31
Merged-chr7-97944195-1	chr7	97944095	97944295	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177696, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	24237.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	6.46	5.28	4.56	3.62	6.55	4.7	5.98	5.75	7.08	10.54	3.52	7.83
Merged-chr4-66794438-1	chr4	66794338	66794538	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33113.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.04	4.02	4.56	0.4	4.09	1.25	7.64	4.96	0.79	9.54	0.5	1.88
Merged-chr11-73025296-2	chr11	73025216	73025416	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	6308.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	5.65	7.04	7.42	4.42	5.73	2.51	4.65	6.7	7.87	4.52	5.53	7.83
Merged-chr6-124981919-2	chr6	124981822	124982022	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-14798.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	8.08	4.28	10.84	3.62	4.09	9.72	2.33	3.08	5.11	14.56	8.54	7.52
Merged-chr1-151035128-2	chr1	151035027	151035227	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41692.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.23	6.29	8.56	5.23	8.18	0.94	5.31	5.92	11.21	8.03	10.05	6.58
Merged-chr16-93429582-1	chr16	93429482	93429682	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040494, intron 1 of 2)	intron (NR_040494, intron 1 of 2)	29290.0	NR_040494	72264.0	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	6.46	2.77	3.42	6.44	2.45	2.82	7.64	1.74	0.98	0.5	1.0	2.19
Merged-chr7-46838300-3	chr7	46838205	46838405	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7499.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.06	7.55	10.27	7.64	9.0	4.7	3.99	10.07	6.88	10.54	7.03	4.39
Merged-chr2-164836734-1	chr2	164836634	164836834	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038492, intron 8 of 14)	intron (NM_001038492, intron 8 of 14)	2961.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	1.62	2.77	2.28	0.8	3.68	2.2	7.31	1.01	3.74	3.01	1.0	2.51
Merged-chr11-87986600-1	chr11	87986500	87986700	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	-15.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	2.83	4.28	4.56	2.41	8.18	0.63	3.99	4.65	6.29	6.03	5.02	6.27
Merged-chr9-64703724-3	chr9	64703618	64703818	+	637.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 23 of 24)	MIRc|SINE|MIR	34038.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	6.06	7.04	13.69	8.04	12.68	10.98	7.97	9.79	9.44	4.02	9.55	4.7
Merged-chr2-52958663-3	chr2	52958577	52958777	+	637.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	100809.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.86	3.27	15.97	5.63	5.32	5.96	4.32	8.19	10.62	5.52	14.07	7.52
Merged-chr10-17043174-3	chr10	17043087	17043287	+	637.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	52595.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	7.67	6.04	12.55	4.83	11.86	4.7	7.31	7.74	10.82	7.53	15.07	7.52
Merged-chr1-172324862-3	chr1	172324762	172324962	+	637.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360808, intron 3 of 3)	intron (NM_001360808, intron 3 of 3)	4460.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	7.27	8.05	5.7	10.05	7.77	6.9	3.32	6.62	7.67	10.04	14.57	5.01
Merged-chr4-40680571-3	chr4	40680470	40680670	+	637.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22346.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	8.88	9.81	3.42	0.8	5.32	9.41	4.32	5.97	9.44	6.03	12.06	1.57
Merged-chr12-35046410-2	chr12	35046281	35046481	+	637.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-808.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.85	4.02	2.85	6.03	9.82	2.51	3.65	5.44	9.05	9.04	5.53	4.07
Merged-chr1-91239304-2	chr1	91239205	91239405	+	637.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10999.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	2.83	5.03	2.28	4.83	7.36	5.02	2.33	6.7	5.9	6.53	14.57	8.14
Merged-chr6-140853745-2	chr6	140853654	140853854	+	637.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	226869.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.23	9.56	4.56	2.41	6.55	13.17	5.65	3.98	7.67	15.06	15.07	11.59
Merged-chr16-93915630-1	chr16	93915530	93915730	+	637.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	13937.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.81	2.26	0.0	3.22	0.82	1.25	1.33	0.59	8.65	10.04	6.53	8.14
Merged-chr2-79757210-1	chr2	79757110	79757310	+	637.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290743, intron 3 of 4)	ORR1A4|LTR|ERVL-MaLR	49430.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	2.83	1.76	3.99	8.04	4.09	4.7	4.65	4.23	12.0	9.04	22.61	6.27
Merged-chr18-75904441-1	chr18	75904341	75904541	+	637.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84263.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.42	1.01	0.0	0.8	1.64	4.7	0.0	3.64	10.23	7.03	9.55	12.22
Merged-chr10-62782060-3	chr10	62781960	62782160	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026201, intron 5 of 24)	B2_Mm1a|SINE|B2	10308.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	10.5	5.03	4.56	12.07	13.09	3.76	5.65	6.06	10.03	2.51	8.54	9.4
Merged-chr11-78467756-1	chr11	78467656	78467856	+	637.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2055.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	6.46	3.77	5.7	3.62	1.23	4.08	6.31	1.88	3.15	2.51	6.53	2.51
Merged-chr8-84687174-3	chr8	84687016	84687216	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	746.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	3.23	4.02	3.99	2.41	8.59	3.45	1.33	3.42	3.74	4.02	4.02	5.64
Merged-chr4-152333177-3	chr4	152333090	152333290	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_102292, exon 5 of 5)	non-coding (NR_102292, exon 5 of 5)	-5461.0	NM_029216	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	5.65	9.56	9.13	8.04	5.73	5.02	4.32	11.05	9.24	8.54	7.54	7.52
Merged-chr4-150237909-3	chr4	150237788	150237988	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	564.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	7.27	2.52	3.42	4.02	7.36	9.09	8.97	8.8	6.69	13.56	6.53	8.46
Merged-chr5-24527122-1	chr5	24527022	24527222	+	637.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015739)	promoter-TSS (NM_015739)	-274.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	8.08	5.28	4.56	7.24	6.14	6.9	2.66	7.04	5.31	5.52	6.53	3.76
Merged-chr3-96811435-3	chr3	96811332	96811532	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163497, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	3089.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	9.69	4.02	7.99	10.86	3.68	5.96	3.65	6.9	8.26	1.51	6.03	5.64
Merged-chr8-41375717-2	chr8	41375636	41375836	+	637.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1039.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	6.86	1.76	5.13	3.62	11.86	6.27	7.31	1.68	11.01	6.03	13.57	7.52
Merged-chr19-40673460-2	chr19	40673356	40673556	+	637.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	L2a|LINE|L2	13686.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.63	5.79	4.56	0.0	7.36	15.05	11.63	5.5	7.08	1.51	8.04	2.51
Merged-chr19-33380560-2	chr19	33380471	33380671	+	637.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	11724.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	6.86	8.05	8.56	6.03	10.64	5.33	10.63	6.28	4.33	9.54	6.53	5.01
Merged-chr11-114750260-2	chr11	114750165	114750365	+	637.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-15124.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	3.23	1.01	1.71	2.41	8.59	9.41	4.65	5.44	12.78	9.54	6.03	7.52
Merged-chr11-121658461-3	chr11	121658362	121658562	+	637.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	14689.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	9.69	3.77	5.7	7.24	15.96	8.78	8.64	4.91	10.42	8.03	12.56	3.13
Merged-chr1-151307264-3	chr1	151307161	151307361	+	637.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37225.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	8.08	1.51	11.98	11.66	7.36	5.64	10.3	10.88	7.28	13.05	11.56	4.7
Merged-chr11-120612854-3	chr11	120612768	120612968	+	637.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347615, intron 6 of 12)	intron (NM_001347615, intron 6 of 12)	4391.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	10.9	8.05	5.7	5.23	4.5	11.29	1.66	5.5	8.06	16.57	8.04	5.95
Merged-chr1-170992725-2	chr1	170992620	170992820	+	637.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-16649.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	9.69	8.8	8.56	10.86	6.95	5.64	2.99	5.21	3.15	4.52	6.03	4.07
Merged-chr5-103856401-2	chr5	103856259	103856459	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54900.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	1.62	3.27	1.71	3.62	1.64	3.76	0.66	2.64	3.54	7.03	6.53	2.82
Merged-chrX-12005831-3	chrX	12005671	12005871	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74782.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	4.44	4.78	5.13	7.64	3.68	6.27	5.65	5.83	7.08	3.51	12.56	4.39
Merged-chr6-122603153-1	chr6	122603053	122603253	+	637.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-709.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	2.02	1.76	4.56	1.21	4.09	5.64	2.33	2.86	9.64	6.53	11.05	12.84
Merged-chr9-89704444-2	chr9	89704320	89704520	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025360, intron 1 of 2)	intron (NM_025360, intron 1 of 2)	623.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	4.85	6.04	5.13	4.02	6.95	5.33	6.98	6.34	5.7	7.53	7.03	8.77
Merged-chr7-19370149-2	chr7	19370054	19370254	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001010836, exon 4 of 13)	exon (NM_001010836, exon 4 of 13)	8938.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	4.85	9.56	13.12	4.02	6.95	7.53	5.31	2.16	7.28	15.57	9.55	10.96
Merged-chr5-76657703-1	chr5	76657603	76657803	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	65989.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	2.52	1.14	3.62	7.36	8.15	2.99	5.94	3.93	7.03	9.04	2.82
Merged-chr14-76852030-2	chr14	76851933	76852133	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91902.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0.81	6.04	7.42	1.61	3.27	1.57	4.65	4.29	3.15	1.51	3.01	2.51
Merged-chr6-31563976-2	chr6	31563853	31564053	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013723)	promoter-TSS (NM_013723)	-16.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	7.27	2.26	2.28	8.04	11.86	6.9	7.97	7.93	6.88	5.02	6.03	6.58
Merged-chr14-103717667-1	chr14	103717567	103717767	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18235.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	3.23	5.03	4.56	1.61	6.55	4.7	1.33	9.53	5.9	4.52	11.56	4.39
Merged-chr4-63948251-2	chr4	63948149	63948349	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86965.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	8.88	6.29	5.13	4.83	8.59	2.82	1.99	7.21	3.93	5.02	10.05	4.07
Merged-chr5-135712453-2	chr5	135712349	135712549	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	23304.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	8.48	1.76	12.55	1.61	11.05	8.47	3.32	4.26	12.0	5.02	4.02	2.51
Merged-chr6-86004423-3	chr6	86004299	86004499	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155305)	promoter-TSS (NR_155305)	46.0	NR_155305	75355.0	Mm.142685	NR_155305	ENSMUSG00000106791	4930553P18Rik	-	RIKEN cDNA 4930553P18 gene	ncRNA	4.85	7.8	5.13	11.66	3.68	4.7	3.32	7.54	8.85	6.03	12.06	8.46
Merged-chr9-118821802-1	chr9	118821702	118821902	+	637.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104734.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.04	1.76	0.0	2.01	2.45	6.27	5.98	1.04	8.85	6.03	8.54	3.13
Merged-chr17-66711368-1	chr17	66711268	66711468	+	637.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 23 of 32)	ORR1E|LTR|ERVL-MaLR	-3088.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	1.62	1.76	2.28	1.61	6.55	6.59	6.31	4.07	13.37	9.54	9.04	5.33
Merged-chr1-55739193-1	chr1	55739093	55739293	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-192048.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.23	2.77	4.56	5.63	10.64	3.45	12.29	7.88	3.74	4.52	3.01	2.51
Merged-chr5-62672436-1	chr5	62672336	62672536	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 15 of 32)	intron (NM_178407, intron 15 of 32)	93741.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	2.42	0.0	1.14	4.83	6.95	1.88	5.98	6.45	0.39	0.5	1.51	1.25
Merged-chr14-27198924-1	chr14	27198824	27199024	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	-39086.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.62	6.54	12.55	8.45	1.23	0.94	1.0	0.53	5.11	7.53	2.51	6.58
Merged-chr9-117902492-2	chr9	117902380	117902580	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138042.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	2.02	2.26	2.28	4.02	2.86	4.7	2.66	7.09	9.24	1.0	18.09	2.51
Merged-chr14-54528681-2	chr14	54528574	54528774	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11204.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	6.06	8.05	4.56	9.25	4.91	4.08	3.65	6.76	8.46	2.51	11.56	3.13
Merged-chr11-31736876-1	chr11	31736776	31736976	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65014.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.81	2.52	2.85	0.0	2.05	8.47	6.31	3.95	1.77	1.0	0.5	3.45
Merged-chr1-91179256-3	chr1	91179160	91179360	+	637.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	-562.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	8.48	5.79	13.69	10.05	7.77	7.21	5.65	10.29	8.26	12.55	6.03	4.39
Merged-chr5-9056258-3	chr5	9056176	9056376	+	637.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44461.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	9.69	6.29	13.12	6.03	7.36	4.39	11.63	5.55	10.42	8.03	9.55	8.77
Merged-chr9-106888823-2	chr9	106888730	106888930	+	637.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1830.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	4.44	4.28	2.85	0.8	8.18	7.53	0.66	6.0	9.05	15.06	11.56	6.89
Merged-chr8-71654731-2	chr8	71654620	71654820	+	637.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 15 of 41)	intron (NM_001029873, intron 15 of 41)	17037.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	9.29	5.53	4.56	2.01	6.95	6.59	5.65	3.45	7.28	8.54	13.57	10.65
Merged-chr17-36206123-1	chr17	36206023	36206223	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-15972.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	6.86	3.27	2.28	3.22	6.55	8.78	11.96	6.64	4.13	0.0	2.51	4.07
Merged-chr1-180720543-1	chr1	180720443	180720643	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5500.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.46	3.02	6.85	0.0	9.41	9.41	1.99	5.69	10.23	7.03	8.04	5.95
Merged-chr11-110271901-3	chr11	110271781	110271981	+	637.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_147219, exon 39 of 39)	3' UTR (NM_147219, exon 39 of 39)	-20105.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	9.69	10.31	14.83	6.03	11.45	5.33	8.97	4.54	8.06	4.52	10.55	2.51
Merged-chr3-84918580-1	chr3	84918480	84918680	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	B4A|SINE|B4	-33631.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.81	2.52	1.14	0.8	8.18	1.25	3.65	2.86	0.59	5.02	0.0	1.88
Merged-chr4-19870586-3	chr4	19870484	19870684	+	637.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51857.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	7.27	6.04	4.56	4.02	3.68	13.8	6.98	5.5	11.21	14.56	10.05	0.94
Merged-chr1-181230934-1	chr1	181230834	181231034	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18956.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.4	0.75	2.28	0.8	6.55	8.15	5.65	5.69	1.57	4.02	3.01	0.0
Merged-chr17-25985255-1	chr17	25985155	25985355	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347334, intron 1 of 11)	CpG	541.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	6.46	6.29	5.13	2.01	6.55	11.6	7.31	4.82	7.28	7.53	5.02	4.7
Merged-chr7-112180354-2	chr7	112180256	112180456	+	637.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20874.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	2.42	4.53	3.42	8.45	6.95	4.7	2.99	10.12	8.46	8.54	13.06	5.64
Merged-chr5-113954619-2	chr5	113954510	113954710	+	637.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 10 of 14)	intron (NM_198109, intron 10 of 14)	39147.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	5.65	4.78	11.41	6.03	6.95	11.6	0.66	5.72	9.44	6.53	14.57	6.89
Merged-chr1-191314099-2	chr1	191313993	191314193	+	637.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4025.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	11.31	1.51	7.99	8.04	13.5	4.08	5.31	6.34	5.7	11.05	4.02	7.52
Merged-chr11-53735285-2	chr11	53735206	53735406	+	637.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14512.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	6.86	9.56	3.42	0.0	4.91	11.29	3.65	5.52	10.23	11.05	3.01	5.01
Merged-chr8-71364382-3	chr8	71364325	71364525	+	637.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-2423.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	8.88	6.79	5.7	4.42	10.23	9.09	3.65	5.24	7.47	8.54	5.02	5.33
Merged-chr8-86903312-3	chr8	86903195	86903395	+	637.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18037.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	7.27	5.28	1.71	3.62	13.09	8.15	4.65	9.42	12.39	9.04	6.03	8.14
Merged-chr15-36163897-2	chr15	36163818	36164018	+	637.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081253, intron 1 of 4)	intron (NM_001081253, intron 1 of 4)	966.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	6.06	3.02	12.55	6.84	6.14	4.08	3.65	7.63	7.87	7.53	11.05	10.02
Merged-chrX-12128405-3	chrX	12128371	12128571	+	637.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	31875.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	9.29	3.52	1.14	8.45	4.5	3.45	5.65	4.09	7.08	4.52	11.56	3.76
Merged-chr10-93309354-1	chr10	93309254	93309454	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	1805.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	8.08	2.01	3.42	1.21	8.59	8.78	1.0	1.96	3.93	4.02	2.01	1.25
Merged-chr14-20576323-2	chr14	20576222	20576422	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030180, intron 13 of 20)	intron (NM_030180, intron 13 of 20)	-29749.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	9.69	6.04	10.27	1.61	9.82	10.35	1.99	7.01	4.92	8.03	8.04	6.27
Merged-chr8-84700088-2	chr8	84699995	84700195	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001164560)	TTS (NM_001164560)	-1362.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	12.52	1.01	11.98	6.84	6.95	11.29	3.99	5.8	2.16	0.5	4.52	2.82
Merged-chr3-101616040-1	chr3	101615940	101616140	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11333.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.23	4.78	5.13	8.85	11.05	0.94	4.65	4.74	9.05	7.53	18.59	7.52
Merged-chr16-69948927-1	chr16	69948827	69949027	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-85183.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.81	1.26	0.0	3.22	1.23	1.88	3.99	5.21	0.98	3.51	1.51	3.13
Merged-chr4-135545261-1	chr4	135545161	135545361	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013756, intron 15 of 15)	intron (NM_001013756, intron 15 of 15)	28359.0	NM_001013756	230824.0	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead like transcription factor 3	protein-coding	9.29	5.03	5.13	4.83	3.27	10.35	1.33	2.05	2.36	4.02	6.53	5.95
Merged-chr7-29247428-1	chr7	29247328	29247528	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028179)	TTS (NM_028179)	1039.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	5.25	5.03	5.7	1.61	3.27	6.9	1.99	3.67	5.31	2.51	6.53	4.39
Merged-chr19-37135676-2	chr19	37135594	37135794	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290829, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	-38149.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	8.88	7.8	7.42	11.66	11.86	9.09	3.99	2.97	13.37	2.51	6.03	8.46
Merged-chr16-75850570-1	chr16	75850470	75850670	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58696.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	1.21	3.77	3.42	3.62	2.05	3.45	5.65	6.2	9.83	4.52	6.03	0.94
Merged-chr4-105882007-1	chr4	105881907	105882107	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-359206.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	1.01	6.28	1.61	3.68	4.39	1.33	3.0	12.39	2.51	6.53	8.14
Merged-chr10-116951141-1	chr10	116951041	116951241	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001003950)	promoter-TSS (NM_001003950)	579.0	NR_038026	71086.0	Mm.214134	NR_038025	ENSMUSG00000112627	4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	3.23	2.52	2.85	0.8	12.68	4.7	3.65	5.02	5.9	4.02	3.52	5.64
Merged-chr14-61438488-2	chr14	61438427	61438627	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008466, intron 1 of 16)	intron (NM_008466, intron 1 of 16)	1420.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	3.63	10.56	4.56	3.62	2.86	7.21	1.33	0.03	8.85	10.54	5.53	4.07
Merged-chr15-64240928-2	chr15	64240824	64241024	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	71749.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	13.33	5.53	6.28	8.04	7.36	3.14	3.32	7.51	3.74	6.53	9.04	2.19
Merged-chr15-63969529-1	chr15	63969429	63969629	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360038, intron 2 of 11)	URR1B|DNA|hAT-Charlie	28537.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.21	0.0	0.57	0.0	2.86	6.27	0.33	4.77	0.98	1.51	1.51	1.25
Merged-chr8-10902651-1	chr8	10902551	10902751	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_102285)	TTS (NR_102285)	2729.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	1.62	6.04	6.28	13.27	6.14	4.39	4.32	5.66	7.28	4.52	9.55	1.88
Merged-chr2-70126856-1	chr2	70126756	70126956	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177376, exon 8 of 35)	exon (NM_177376, exon 8 of 35)	87730.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	2.42	0.75	0.0	2.41	1.23	4.39	3.65	1.07	1.18	4.52	0.0	0.31
Merged-chr3-101288214-1	chr3	101288114	101288314	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013486)	promoter-TSS (NM_013486)	-275.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	4.44	3.02	0.57	1.61	6.14	5.33	4.98	5.72	2.56	1.0	1.0	1.88
Merged-chr18-32281707-1	chr18	32281607	32281807	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	41376.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	2.42	3.02	1.71	2.41	5.32	6.27	1.0	5.38	6.1	3.51	8.54	5.64
Merged-chr19-4417376-1	chr19	4417276	4417476	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20299.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	5.25	7.55	11.41	6.44	14.32	3.76	3.99	7.32	7.08	12.05	5.53	4.7
Merged-chr16-16854977-1	chr16	16854877	16855077	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9008.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	5.25	8.8	7.99	2.82	0.82	5.02	1.99	6.14	4.92	3.01	3.01	1.57
Merged-chr10-96934881-1	chr10	96934781	96934981	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-100887.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	4.04	5.53	3.42	10.86	8.18	5.64	1.33	7.49	6.69	7.03	7.03	3.13
Merged-chr10-52426635-1	chr10	52426535	52426735	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	9088.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	2.83	2.77	4.56	3.22	5.73	0.63	3.32	6.14	5.9	8.03	8.54	1.88
Merged-chr8-69090341-1	chr8	69090241	69090441	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-1119.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	1.62	3.27	7.42	5.23	3.27	1.88	4.32	5.58	5.7	4.52	4.02	3.13
Merged-chrX-12130235-1	chrX	12130135	12130335	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	30111.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	2.02	6.79	15.4	11.26	2.86	4.39	1.99	1.12	3.54	1.0	5.53	3.13
Merged-chr3-79861138-2	chr3	79861044	79861244	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18482.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.81	0.75	0.57	0.8	2.45	6.27	7.97	5.8	15.14	2.51	11.56	1.88
Merged-chr8-83331763-1	chr8	83331663	83331863	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170691, intron 1 of 8)	intron (NM_001170691, intron 1 of 8)	723.0	NM_001170691	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	4.85	0.75	4.56	2.01	4.09	2.51	0.66	3.42	8.46	11.55	13.57	7.52
Merged-chr14-50991316-2	chr14	50991227	50991427	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-16424.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	5.65	10.06	5.7	5.23	4.91	7.84	2.66	5.94	10.82	15.06	8.04	4.39
Merged-chr15-36763847-1	chr15	36763747	36763947	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27085.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	6.06	4.02	6.85	3.22	2.05	4.7	2.66	3.9	7.47	4.02	11.05	3.45
Merged-chr6-57707395-1	chr6	57707295	57707495	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	4940.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.63	2.52	3.42	0.8	2.86	6.9	3.65	5.1	6.29	7.03	7.03	2.19
Merged-chr5-117140625-1	chr5	117140525	117140725	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	7037.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.04	2.52	6.85	2.82	9.82	3.14	2.33	4.71	3.15	6.03	5.02	3.13
Merged-chr1-88263024-1	chr1	88262924	88263124	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040291)	TTS (NR_040291)	6384.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	1.01	1.71	2.01	2.86	6.9	4.32	4.71	5.51	3.51	3.01	2.51
Merged-chrX-52613991-1	chrX	52613891	52614091	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016697)	promoter-TSS (NM_016697)	-17.0	NM_016697	14734.0	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	6.86	2.52	5.13	3.22	4.5	6.27	2.99	4.32	2.75	1.51	8.54	4.07
Merged-chr15-101081227-1	chr15	101081127	101081327	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26828.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	4.04	7.29	0.0	2.01	10.23	7.84	5.65	5.13	4.72	3.51	3.52	5.01
Merged-chr5-144358071-1	chr5	144357971	144358171	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025833)	promoter-TSS (NM_025833)	41.0	NM_025833	66898.0	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	7.67	1.26	8.56	3.22	9.0	4.7	5.31	3.59	2.36	5.02	5.02	5.33
Merged-chr15-93310377-1	chr15	93310277	93310477	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_024189, intron 2 of 3)	MTC|LTR|ERVL-MaLR	26558.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	8.08	10.56	9.13	9.65	1.23	6.9	9.63	3.67	5.11	11.55	17.59	5.01
Merged-chr6-72553727-1	chr6	72553627	72553827	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	B1_Mur1|SINE|Alu	4080.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	2.42	3.27	5.7	2.41	2.45	2.51	3.32	4.63	11.41	6.53	5.53	9.4
Merged-chr15-62387767-1	chr15	62387667	62387867	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168316.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.85	3.52	5.13	9.65	3.68	1.88	4.65	5.27	5.11	6.03	9.55	3.45
Merged-chr2-26931129-1	chr2	26931029	26931229	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2382.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.81	2.52	5.13	2.01	1.64	6.59	2.33	3.73	7.28	1.51	8.54	3.45
Merged-chr9-58555054-1	chr9	58554954	58555154	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-14114.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	2.83	2.52	2.28	2.41	1.23	6.59	4.98	4.99	4.33	5.52	7.03	4.39
Merged-chr4-148632261-1	chr4	148632161	148632361	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5265.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	4.85	2.01	4.56	2.41	4.09	5.64	2.33	5.5	2.56	1.51	5.02	5.33
Merged-chr16-21570357-1	chr16	21570257	21570457	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 41 of 46)	intron (NM_001081366, intron 41 of 46)	124308.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	2.42	3.02	6.28	5.63	6.55	2.51	3.65	6.45	2.36	4.52	5.53	8.14
Merged-chr16-3234553-1	chr16	3234453	3234653	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-357845.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.83	5.79	3.42	1.61	1.23	0.63	4.32	2.44	4.72	4.52	2.51	4.7
Merged-chr4-123083604-1	chr4	123083504	123083704	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21557.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	9.69	4.53	3.42	1.21	2.45	3.45	0.0	0.62	1.97	1.0	5.53	4.07
Merged-chr5-123620265-2	chr5	123620184	123620384	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 12 of 18)	intron (NM_001359224, intron 12 of 18)	-47269.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	3.23	8.8	6.28	3.22	6.95	3.14	2.99	9.42	7.08	8.54	12.56	11.9
Merged-chr1-60898889-1	chr1	60898789	60898989	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10136.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	2.52	2.28	2.01	0.82	3.14	1.99	0.06	3.15	12.55	4.02	6.89
Merged-chr15-67312824-1	chr15	67312724	67312924	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	86055.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.81	0.0	0.57	1.61	4.09	5.33	3.32	8.38	3.34	0.0	1.0	1.57
Merged-chr11-31942461-1	chr11	31942361	31942561	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23172.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	2.42	2.52	3.42	1.61	1.64	6.27	1.33	4.77	2.75	2.51	6.03	0.63
Merged-chr16-92788420-1	chr16	92788320	92788520	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	37654.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.44	2.52	1.14	4.02	2.45	5.64	1.99	7.12	0.39	2.51	0.0	1.25
Merged-chr6-58918515-1	chr6	58918415	58918615	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361966, intron 25 of 25)	intron (NM_001361966, intron 25 of 25)	-11389.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	2.42	2.01	3.42	0.0	6.14	1.25	1.66	6.87	3.74	5.02	4.02	3.76
Merged-chr8-105161377-1	chr8	105161277	105161477	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-9297.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.81	2.52	9.13	4.02	4.09	7.53	7.64	6.08	2.36	4.02	2.01	2.19
Merged-chr15-3293692-1	chr15	3293592	3293792	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166063, intron 4 of 8)	C-rich|Low_complexity|Low_complexity	9834.0	NM_001166063	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	7.27	2.52	6.85	6.03	11.05	2.82	4.32	6.42	6.29	6.53	8.04	4.39
Merged-chr8-128057985-1	chr8	128057885	128058085	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	220240.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	3.23	3.77	6.85	5.23	4.91	1.57	5.98	1.43	8.46	6.03	2.01	4.39
Merged-chr4-134634119-1	chr4	134634019	134634219	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	UCON29|DNA|PiggyBac?	-66268.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	2.42	2.01	2.85	4.83	4.91	3.14	5.31	4.51	2.56	1.0	2.01	5.33
Merged-chr19-55830773-1	chr19	55830673	55830873	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-64548.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.08	3.27	9.13	2.82	0.82	5.02	2.99	4.68	6.1	5.02	4.52	1.57
Merged-chr1-166441891-1	chr1	166441791	166441991	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13597.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	3.63	1.01	1.14	0.4	4.5	2.51	3.99	4.32	4.52	1.0	7.54	2.19
Merged-chrX-77836102-1	chrX	77836002	77836202	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	17398.0	NM_017471	54192.0	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	2.83	3.52	5.7	4.02	2.86	6.27	4.65	5.47	3.15	3.51	4.52	1.88
Merged-chr17-83631455-2	chr17	83631327	83631527	+	636.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153512, exon 1 of 2)	exon (NM_153512, exon 1 of 2)	468.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	6.86	1.51	5.13	3.22	9.41	7.53	3.65	6.87	11.6	7.53	11.56	5.33
Merged-chr1-95666991-3	chr1	95666918	95667118	+	636.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	576.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	8.08	5.28	3.99	10.05	11.05	12.54	6.98	3.45	6.69	7.03	3.52	1.88
Merged-chr6-122660677-2	chr6	122660581	122660781	+	636.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34257.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	10.9	5.28	1.71	9.65	9.0	6.9	1.99	5.36	5.9	7.53	10.55	6.89
Merged-chr4-86695229-3	chr4	86695144	86695344	+	636.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-25185.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.04	7.04	6.28	4.02	6.95	4.7	2.99	4.21	7.47	7.53	20.1	9.08
Merged-chr13-58389542-3	chr13	58389453	58389653	+	636.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	3333.0	NR_029825	723902.0		NR_029825	ENSMUSG00000065434	Mir7-1	Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1	microRNA 7-1	ncRNA	6.86	8.8	5.13	9.25	8.59	15.05	5.98	5.13	10.03	12.05	8.54	5.64
Merged-chr10-62886174-3	chr10	62886060	62886260	+	636.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253857, intron 1 of 12)	PB1D9|SINE|Alu	1164.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	6.86	6.29	6.85	8.04	6.55	7.21	11.96	7.23	7.67	10.54	10.05	10.34
Merged-chr1-171614152-3	chr1	171614039	171614239	+	636.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6729.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	8.88	4.02	4.56	5.23	11.05	9.41	2.33	6.79	9.24	6.03	9.04	6.89
Merged-chr16-18052826-3	chr16	18052728	18052928	+	636.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010047)	promoter-TSS (NM_010047)	-32.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	8.88	7.04	6.85	6.84	8.59	10.35	6.64	7.4	10.23	10.54	17.59	4.39
Merged-chr11-80043092-2	chr11	80043029	80043229	+	636.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	37862.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	9.29	3.52	3.42	1.61	9.41	8.15	3.32	2.07	13.18	12.05	8.54	5.01
Merged-chr5-45535012-2	chr5	45534944	45535144	+	636.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14815.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	7.67	2.26	1.71	0.8	0.41	5.33	4.98	3.81	4.52	1.0	7.54	2.19
Merged-chr4-59786869-2	chr4	59786790	59786990	+	636.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3035.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	6.06	4.28	3.99	2.82	5.73	6.27	8.97	4.26	14.95	2.51	12.56	8.14
Merged-chr5-66014151-2	chr5	66014052	66014252	+	636.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9867.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	1.21	1.51	4.56	2.01	8.59	5.02	2.33	5.36	7.47	9.54	5.02	1.88
Merged-chr7-3286223-3	chr7	3286116	3286316	+	636.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2822.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	3.63	4.28	10.84	12.07	6.14	7.21	4.98	8.1	8.46	10.04	18.59	10.34
Merged-chr13-96697930-3	chr13	96697823	96698023	+	636.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-26987.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	14.94	6.54	11.41	14.48	9.0	6.59	6.98	4.51	7.67	3.01	14.07	6.27
Merged-chr9-21137432-3	chr9	21137329	21137529	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6154.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	14.94	3.27	1.71	7.24	9.0	3.76	3.99	5.13	9.05	16.07	4.02	7.83
Merged-chr12-105001114-1	chr12	105001014	105001214	+	636.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	-2437.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	7.27	0.75	1.14	0.8	7.77	5.96	5.98	5.94	2.56	1.0	2.01	0.63
Merged-chr8-71368482-3	chr8	71368324	71368524	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025917, intron 4 of 7)	intron (NM_025917, intron 4 of 7)	1207.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	8.08	6.29	1.14	3.22	6.55	4.39	1.66	3.36	8.65	10.04	2.51	3.76
Merged-chr16-43540307-3	chr16	43540224	43540424	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-100331.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	6.46	7.29	2.28	2.41	4.91	5.33	4.65	6.81	11.01	9.54	10.05	0.0
Merged-chr9-107696303-3	chr9	107696229	107696429	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	9262.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	8.48	3.02	3.99	9.25	4.09	3.14	2.66	7.63	5.51	6.53	10.05	8.77
Merged-chr5-147861469-2	chr5	147861361	147861561	+	636.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	833.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	4.04	7.29	3.99	8.04	9.0	15.05	2.66	6.48	14.16	7.03	14.07	5.33
Merged-chr6-56832837-1	chr6	56832737	56832937	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012056, intron 1 of 9)	intron (NM_012056, intron 1 of 9)	778.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	2.83	1.51	3.99	1.21	9.0	5.96	3.32	3.28	4.33	4.02	4.52	3.76
Merged-chr6-3200823-1	chr6	3200723	3200923	+	636.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87696.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	14.94	25.15	12.55	20.91	3.27	6.59	2.66	2.8	0.59	10.54	6.03	6.89
Merged-chr11-121720538-2	chr11	121720439	121720639	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18112.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	2.42	4.53	2.28	5.63	0.0	8.15	3.99	4.85	10.03	1.51	9.55	5.64
Merged-chr5-43897885-1	chr5	43897785	43897985	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	RMER1B|Other|Other	29076.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.44	2.01	5.7	4.02	1.23	5.96	8.64	5.21	1.77	2.01	8.04	4.07
Merged-chr19-9060295-1	chr19	9060195	9060395	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	27661.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	3.23	4.53	1.14	1.61	10.23	7.21	1.66	6.34	7.67	10.04	4.02	5.33
Merged-chr18-34222265-2	chr18	34222146	34222346	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-474.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	4.04	8.05	5.7	4.83	5.73	4.39	8.3	5.3	12.59	6.53	9.04	3.13
Merged-chr15-83607678-1	chr15	83607578	83607778	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271473, intron 19 of 19)	intron (NM_001271473, intron 19 of 19)	-12521.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	4.85	2.77	1.71	1.21	4.09	6.59	6.64	5.75	3.34	11.55	8.54	3.13
Merged-chr7-135793136-2	chr7	135793064	135793264	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76785.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	2.83	5.53	5.7	4.83	4.5	5.64	3.32	5.27	6.88	13.56	7.03	4.39
Merged-chr1-184063182-2	chr1	184063092	184063292	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	28811.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	2.42	4.78	3.42	10.05	8.18	2.82	2.99	7.21	11.6	10.54	4.52	8.14
Merged-chr14-20708601-1	chr14	20708501	20708701	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	1049.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	2.83	2.52	5.7	0.4	4.91	7.21	8.64	4.99	9.44	0.5	4.52	2.82
Merged-chr9-110672655-1	chr9	110672555	110672755	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16152.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.85	4.28	5.7	0.8	9.0	7.21	6.98	3.5	8.26	8.54	15.58	6.27
Merged-chr1-184845019-2	chr1	184844907	184845107	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	840.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	3.63	2.52	8.56	6.03	4.5	2.51	4.32	4.26	5.7	3.01	4.52	4.39
Merged-chr5-74975678-2	chr5	74975575	74975775	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26481.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.23	2.01	2.28	0.0	4.5	7.84	2.33	5.61	2.95	7.03	12.06	5.33
Merged-chr14-70817998-1	chr14	70817898	70818098	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34935.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	2.42	4.02	3.42	3.62	5.32	7.53	2.99	6.03	3.34	1.0	6.53	2.82
Merged-chr5-66165871-2	chr5	66165751	66165951	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040695)	TTS (NR_040695)	-13897.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.42	1.51	4.56	1.61	4.91	6.27	5.98	5.07	9.64	14.56	15.07	7.52
Merged-chr7-98712242-1	chr7	98712142	98712342	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8995.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	4.04	0.5	4.56	1.61	7.77	1.57	5.98	5.92	1.77	1.0	1.0	0.63
Merged-chr17-9031910-2	chr17	9031798	9031998	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43565.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.0	3.02	2.28	3.22	4.91	4.39	1.99	5.66	7.28	4.02	10.55	2.19
Merged-chr14-64842676-1	chr14	64842576	64842776	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	107181.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.4	3.02	6.28	2.41	4.5	4.7	3.32	7.79	4.13	1.0	1.51	5.64
Merged-chr6-122576512-1	chr6	122576412	122576612	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22703.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	6.29	1.14	2.41	6.95	1.57	6.98	4.35	2.75	4.52	1.51	1.57
Merged-chr1-134080261-1	chr1	134080161	134080361	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1106.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.04	3.02	7.99	5.63	0.41	6.27	6.64	3.56	5.51	5.52	8.54	7.21
Merged-chr2-91725726-1	chr2	91725626	91725826	+	636.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-4412.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	8.88	5.03	3.42	6.44	2.86	6.59	3.65	4.68	7.08	7.03	7.03	2.19
Merged-chr13-116964204-1	chr13	116964104	116964304	+	636.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	61312.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	7.27	0.5	3.99	2.41	2.45	0.0	0.0	2.13	12.19	9.04	7.54	3.45
Merged-chr10-60741723-2	chr10	60741614	60741814	+	636.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	11068.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	1.21	7.04	15.97	0.4	13.91	7.84	5.98	5.64	4.13	11.55	12.06	2.51
Merged-chr12-72535358-2	chr12	72535259	72535459	+	636.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-998.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	5.25	6.79	6.85	7.64	8.59	21.32	3.32	5.13	18.1	9.04	11.56	7.83
Merged-chr2-38824070-2	chr2	38823993	38824193	+	636.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-28642.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	6.06	6.29	3.99	16.09	9.0	12.54	11.96	6.53	8.06	11.05	8.04	6.58
Merged-chr17-35122118-2	chr17	35121977	35122177	+	636.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	-24.0	NM_001303446	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	7.27	6.54	2.85	5.63	6.95	9.72	5.31	3.95	7.87	6.53	4.52	12.22
Merged-chr12-76548197-1	chr12	76548097	76548297	+	636.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_046044)	promoter-TSS (NR_046044)	-272.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	12.11	6.54	0.0	0.8	6.14	6.9	4.65	5.66	8.26	3.01	5.53	4.39
Merged-chr1-43447812-3	chr1	43447720	43447920	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	2069.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	10.5	8.8	4.56	4.83	7.36	6.27	5.31	5.19	9.64	8.54	11.05	7.21
Merged-chr6-38691529-1	chr6	38691429	38691629	+	636.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	28460.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	8.48	4.28	3.42	4.83	5.32	6.59	4.32	7.07	5.11	3.51	2.01	4.07
Merged-chr17-35314775-1	chr17	35314675	35314875	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5772.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	7.67	6.54	7.99	12.47	4.91	9.09	6.64	3.64	3.54	2.01	2.51	3.76
Merged-chr18-53088441-1	chr18	53088341	53088541	+	636.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87851.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.83	2.01	14.26	4.42	0.41	2.51	1.0	3.06	11.8	11.05	10.05	5.95
Merged-chr14-31664413-1	chr14	31664313	31664513	+	636.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025295, intron 2 of 3)	LTR37B|LTR|ERV1	23356.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	5.25	5.28	1.14	0.0	9.41	5.96	3.65	8.47	6.69	7.03	4.52	1.25
Merged-chr3-36402049-1	chr3	36401949	36402149	+	636.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41C|LTR|ERV1	73475.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	3.23	1.76	2.28	5.63	4.91	2.82	1.99	6.95	10.03	3.51	12.56	9.71
Merged-chr9-65432471-3	chr9	65432346	65432546	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3336.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	4.04	6.29	8.56	2.41	4.5	10.35	0.0	6.73	11.41	5.02	8.54	4.7
Merged-chr18-10885911-3	chr18	10885816	10886016	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-100364.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	7.27	2.77	7.42	11.66	8.59	7.21	5.65	3.87	10.62	10.54	7.54	5.01
Merged-chr19-45812341-2	chr19	45812246	45812446	+	636.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276358)	promoter-TSS (NM_001276358)	-55.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	9.69	2.01	1.71	2.41	6.95	10.03	2.66	5.5	9.83	8.03	15.07	6.89
Merged-chr3-52031473-2	chr3	52031378	52031578	+	636.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	73528.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.67	9.06	0.0	2.41	7.36	5.64	3.99	6.0	5.31	10.04	7.54	3.76
Merged-chr3-59235577-3	chr3	59235493	59235693	+	636.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 19 of 43)	intron (NM_177855, intron 19 of 43)	-24711.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	9.29	8.55	10.27	3.22	7.77	7.53	5.98	11.78	11.01	7.03	7.54	7.83
Merged-chr6-120539307-3	chr6	120539254	120539454	+	636.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8055.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	2.02	5.28	9.7	7.64	3.27	3.76	7.97	6.42	8.65	10.54	6.03	4.39
Merged-chr7-27685883-3	chr7	27685785	27685985	+	636.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198417, intron 1 of 5)	intron (NM_198417, intron 1 of 5)	-3455.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.81	6.79	8.56	10.86	8.59	10.03	5.65	9.48	5.7	4.02	5.53	7.21
Merged-chr10-127508466-2	chr10	127508404	127508604	+	636.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177707, exon 12 of 12)	3' UTR (NM_177707, exon 12 of 12)	-6435.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	7.67	6.79	5.7	3.22	11.45	12.54	3.65	4.79	8.46	9.04	5.02	4.7
Merged-chr14-55601224-2	chr14	55601125	55601325	+	636.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194346, intron 15 of 20)	intron (NM_194346, intron 15 of 20)	-2760.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	2.83	5.03	3.99	4.02	6.95	1.25	2.99	2.72	10.23	3.51	9.04	5.33
Merged-chr13-52085248-3	chr13	52085145	52085345	+	636.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11496.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	9.69	7.29	6.85	8.85	6.14	6.9	2.66	6.0	8.26	8.54	15.07	9.4
Merged-chr10-68134276-1	chr10	68134176	68134376	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	144450.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.81	0.5	2.28	0.8	2.05	2.51	3.99	5.5	4.52	2.51	3.01	0.94
Merged-chr2-155093573-1	chr2	155093473	155093673	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	6506.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	2.02	3.02	2.28	5.63	8.18	4.39	1.33	4.82	2.95	3.51	8.54	2.82
Merged-chr4-45479066-2	chr4	45478965	45479165	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	51763.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	8.48	2.01	10.27	7.24	2.05	3.45	5.98	11.83	3.34	1.0	10.55	10.02
Merged-chr6-34005891-1	chr6	34005791	34005991	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23557.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	2.01	4.56	11.66	2.86	4.7	4.98	4.29	3.54	6.53	4.52	5.33
Merged-chr18-44392918-1	chr18	44392818	44393018	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	12418.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.4	1.01	0.57	0.8	5.73	2.82	5.31	5.97	0.0	1.0	3.52	1.25
Merged-chr9-62894303-1	chr9	62894203	62894403	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32279.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	2.42	2.77	1.14	3.22	2.05	3.14	7.31	5.8	6.1	5.02	8.04	7.21
Merged-chr7-81850418-1	chr7	81850318	81850518	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8583.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.46	2.52	4.56	3.62	6.14	2.51	3.99	11.19	7.08	4.52	8.54	4.39
Merged-chr8-84738348-1	chr8	84738248	84738448	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36021.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.23	3.52	6.28	4.02	5.73	5.02	4.65	7.23	3.74	2.51	4.52	6.27
Merged-chr3-137941876-1	chr3	137941776	137941976	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23321.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.23	3.02	2.28	1.61	4.91	6.27	3.65	4.4	6.88	8.03	2.01	0.94
Merged-chr14-69251496-1	chr14	69251396	69251596	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026331, intron 1 of 3)	intron (NM_026331, intron 1 of 3)	33607.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	6.86	3.77	4.56	0.0	6.14	2.51	3.99	6.31	2.95	0.0	3.52	1.25
Merged-chr7-105735549-1	chr7	105735449	105735649	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133951, intron 1 of 6)	ORR1B1-int|LTR|ERVL-MaLR	1035.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	5.65	2.77	2.28	3.22	2.45	3.45	6.64	2.69	2.75	2.01	2.01	3.45
Merged-chr12-85848392-1	chr12	85848292	85848492	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 5 of 32)	MLT1F1|LTR|ERVL-MaLR	23442.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	1.62	1.01	4.56	4.02	0.82	4.39	2.33	5.27	5.7	2.51	7.03	2.19
Merged-chr12-111344255-1	chr12	111344155	111344355	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183016, intron 2 of 36)	L1M4c|LINE|L1	33463.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	8.48	2.52	3.42	12.07	0.0	2.51	2.66	4.46	2.95	2.51	3.52	2.82
Merged-chr2-103971275-2	chr2	103971185	103971385	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	998.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	5.25	7.55	3.99	4.83	4.91	5.64	3.32	4.51	1.38	0.5	3.52	3.45
Merged-chr5-92339527-1	chr5	92339427	92339627	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	7700.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	8.08	8.3	0.0	0.8	0.0	0.63	0.0	0.06	0.59	0.0	1.51	1.25
Merged-chr10-17728531-1	chr10	17728431	17728631	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5303.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	1.62	1.51	0.0	0.8	2.45	7.53	0.33	3.31	1.97	4.52	0.5	0.31
Merged-chr15-97907406-1	chr15	97907306	97907506	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 1 of 9)	(GGA)n|Simple_repeat|Simple_repeat	890.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	8.48	2.52	5.13	3.62	2.86	9.72	4.98	4.07	5.9	8.03	5.53	7.21
Merged-chr12-13242673-1	chr12	13242573	13242773	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134040, intron 5 of 25)	intron (NM_134040, intron 5 of 25)	6501.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.81	0.75	0.0	2.41	0.82	4.39	5.65	5.44	7.87	0.0	2.01	1.88
Merged-chr16-75982224-1	chr16	75982124	75982324	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-18560.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	4.04	1.01	3.42	3.22	9.41	6.27	1.99	5.78	2.75	3.01	9.04	4.07
Merged-chr2-160267534-1	chr2	160267434	160267634	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	59960.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	2.42	1.26	5.7	0.0	4.09	8.78	5.65	5.07	3.34	1.0	4.02	3.76
Merged-chr15-100458215-1	chr15	100458115	100458315	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10796.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	3.63	3.77	2.85	1.61	6.55	8.47	6.98	2.16	10.23	6.03	8.54	5.64
Merged-chr12-17551396-1	chr12	17551296	17551496	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013614, exon 12 of 12)	3' UTR (NM_013614, exon 12 of 12)	6523.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	3.23	4.02	0.0	0.0	4.5	2.2	0.66	2.44	7.28	6.03	14.07	8.46
Merged-chr9-104414967-1	chr9	104414867	104415067	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11146.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	5.25	8.05	1.14	2.41	2.05	8.47	1.99	4.29	7.28	11.55	4.52	4.39
Merged-chr17-34136677-1	chr17	34136577	34136777	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360530, intron 2 of 5)	intron (NM_001360530, intron 2 of 5)	-8739.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	11.31	6.79	5.13	5.23	4.09	3.45	4.65	2.36	7.87	7.03	4.02	1.57
Merged-chr11-79060097-1	chr11	79059997	79060197	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348207)	promoter-TSS (NM_001348207)	-261.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.46	15.59	4.56	0.8	0.82	1.88	0.0	2.16	12.98	8.54	3.52	3.45
Merged-chr16-30374487-2	chr16	30374395	30374595	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	14035.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.86	6.54	3.42	4.83	8.59	5.96	0.0	6.34	9.83	10.54	17.08	4.39
Merged-chr14-70077990-1	chr14	70077890	70078090	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289927, intron 1 of 1)	CpG	195.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.23	11.57	3.99	4.02	3.27	2.82	1.66	3.08	9.24	5.02	5.53	5.33
Merged-chr12-34591910-2	chr12	34591812	34592012	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	RCHARR1|DNA|hAT-Charlie	-63023.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.5	1.51	9.13	6.44	8.18	5.33	6.31	10.43	7.28	14.06	13.06	8.46
Merged-chr15-27667418-1	chr15	27667318	27667518	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14124.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	2.02	2.01	4.56	5.63	2.45	4.39	3.65	4.85	2.56	5.52	5.02	7.21
Merged-chr3-43215879-1	chr3	43215779	43215979	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	1473261.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	1.51	3.42	2.41	2.05	6.27	4.65	5.38	3.34	4.52	12.56	5.95
Merged-chr1-161974557-1	chr1	161974457	161974657	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	5079.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	4.85	3.77	1.14	6.44	7.77	3.76	5.98	4.4	1.57	4.02	5.02	2.19
Merged-chr18-25727033-1	chr18	25726933	25727133	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	26950.0	NM_001146295	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.83	5.53	3.99	2.01	4.5	3.76	14.28	4.29	6.88	9.04	5.02	6.89
Merged-chr8-14986775-1	chr8	14986675	14986875	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-24250.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	3.23	0.75	3.42	2.41	2.05	4.39	2.33	6.48	3.15	3.01	0.5	0.0
Merged-chr2-117346738-3	chr2	117346693	117346893	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-3916.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	7.27	2.26	6.85	7.64	18.41	4.39	4.32	3.87	10.42	10.04	11.56	4.7
Merged-chr10-117747127-1	chr10	117747027	117747227	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-769.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	4.44	5.03	4.56	5.63	4.5	4.39	3.99	3.11	10.82	10.54	4.02	5.33
Merged-chr8-13753904-2	chr8	13753793	13753993	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3763.0	NM_027276	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	5.65	6.54	0.0	10.46	2.45	5.33	0.66	7.26	9.83	5.02	1.0	10.65
Merged-chr17-57399018-1	chr17	57398918	57399118	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 2 of 22)	L1Md_F2|LINE|L1	40332.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.04	3.52	2.28	0.8	2.45	9.09	1.99	0.98	9.05	3.01	11.56	3.76
Merged-chr13-111792287-1	chr13	111792187	111792387	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16706.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.62	0.25	1.14	0.4	3.68	2.82	5.31	5.07	1.97	1.0	1.51	1.57
Merged-chr13-55178788-1	chr13	55178688	55178888	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25970.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	6.06	1.51	7.42	2.41	7.77	3.45	1.66	5.21	10.62	13.56	4.52	2.51
Merged-chr2-90549712-1	chr2	90549612	90549812	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	30935.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	3.27	6.28	0.8	0.41	0.63	2.66	1.85	8.46	11.05	5.02	3.13
Merged-chr10-81198437-1	chr10	81198337	81198537	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3600.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	4.85	12.32	0.57	3.62	5.73	4.08	2.33	6.08	5.31	9.54	6.53	5.01
Merged-chr9-56636373-1	chr9	56636273	56636473	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311076)	promoter-TSS (NM_001311076)	-725.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	6.46	4.53	3.99	3.62	6.95	5.64	4.32	4.54	5.51	5.02	4.02	4.39
Merged-chr11-59216945-2	chr11	59216829	59217029	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8568.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	7.67	4.02	7.99	6.44	2.86	5.33	5.98	6.53	6.69	5.02	7.54	10.02
Merged-chr11-58977452-2	chr11	58977344	58977544	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-649.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	2.02	8.8	3.99	9.25	0.82	3.76	4.98	4.99	4.13	3.51	5.02	7.52
Merged-chr14-103088731-1	chr14	103088631	103088831	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360342, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	10273.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	7.67	4.28	5.13	3.22	6.14	6.27	2.99	5.61	7.47	5.52	6.03	2.82
Merged-chr12-116053420-1	chr12	116053320	116053520	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	5696.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	8.88	4.02	15.4	2.41	4.5	1.88	5.31	6.08	5.7	7.53	4.52	5.95
Merged-chr5-139284823-1	chr5	139284723	139284923	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	31326.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.67	2.52	2.85	1.61	5.73	8.47	6.64	5.02	12.98	11.55	8.04	2.82
Merged-chrX-36229514-1	chrX	36229414	36229614	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33610.0	NM_001358476	72693.0	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	0.81	2.01	5.7	6.03	5.32	0.94	4.65	7.26	3.34	3.01	5.53	6.89
Merged-chr12-32693106-1	chr12	32693006	32693206	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127229.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	7.27	1.51	7.99	3.62	13.91	6.59	0.66	5.86	7.47	8.54	5.53	6.27
Merged-chr5-124551633-1	chr5	124551533	124551733	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1231.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	7.27	5.79	1.14	1.61	3.68	5.64	2.99	0.17	7.08	6.03	8.54	10.65
Merged-chr13-49364883-1	chr13	49364783	49364983	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	23334.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	1.62	0.5	3.42	2.41	7.77	2.51	4.98	5.38	3.15	1.51	2.51	3.76
Merged-chr9-57659937-1	chr9	57659837	57660037	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6306.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	4.85	2.52	1.14	6.84	8.59	6.27	1.33	5.97	2.95	1.51	2.51	3.76
Merged-chr18-68252112-1	chr18	68252012	68252212	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	8861.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	1.62	1.76	7.99	3.22	2.86	5.64	3.99	5.21	6.29	4.52	6.53	8.77
Merged-chr19-16048204-1	chr19	16048104	16048304	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63129.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.02	2.52	7.42	3.22	2.86	1.25	4.32	1.43	4.52	0.0	4.52	7.52
Merged-chr2-32550050-1	chr2	32549950	32550150	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	14691.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	8.48	5.28	6.85	3.62	3.68	9.41	1.66	4.51	6.88	4.02	6.53	2.51
Merged-chr2-145744648-1	chr2	145744548	145744748	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41468.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.85	0.5	2.28	4.83	8.18	7.84	4.32	6.2	6.1	2.01	4.02	0.94
Merged-chr3-95893242-1	chr3	95893142	95893342	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-679.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	1.62	2.26	2.28	1.61	3.27	6.59	1.0	5.1	5.31	7.03	5.02	7.52
Merged-chr12-111738955-3	chr12	111738858	111739058	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	B3|SINE|B2	-19891.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	6.86	8.55	7.42	4.02	6.55	11.29	6.98	5.78	6.1	16.07	14.07	4.39
Merged-chr2-130578330-1	chr2	130578230	130578430	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2161.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	3.23	5.03	2.85	1.61	2.86	0.63	0.66	1.51	9.05	6.53	10.55	2.82
Merged-chr7-123487901-2	chr7	123487807	123488007	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081329, intron 5 of 6)	ORR1D1-int|LTR|ERVL-MaLR	12719.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	2.42	4.53	10.27	8.85	6.55	2.2	0.0	4.6	7.08	1.0	0.0	2.82
Merged-chr3-81141032-1	chr3	81140932	81141132	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357746, intron 2 of 6)	URR1A|DNA|hAT-Charlie	104616.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.46	1.76	5.7	8.04	3.68	5.96	3.32	5.94	4.72	1.51	2.01	1.88
Merged-chr1-131138859-3	chr1	131138751	131138951	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	-617.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	6.06	5.03	11.41	5.63	4.91	10.35	7.64	7.21	9.24	10.04	13.57	6.89
Merged-chr10-34416763-3	chr10	34416668	34416868	+	635.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176968, intron 1 of 11)	intron (NM_176968, intron 1 of 11)	1783.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	1.62	4.78	10.84	7.64	6.95	8.78	6.64	5.66	10.03	0.5	8.54	7.83
Merged-chr16-56036093-2	chr16	56035999	56036199	+	635.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029092, intron 1 of 1)	intron (NM_029092, intron 1 of 1)	1675.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	4.85	6.54	6.85	9.65	7.36	12.86	5.31	6.14	3.54	12.55	12.06	10.34
Merged-chr1-88283892-3	chr1	88283807	88284007	+	635.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6328.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	4.44	5.53	2.28	8.04	6.95	14.42	4.98	5.94	11.21	7.53	31.15	8.77
Merged-chr16-94207427-3	chr16	94207317	94207517	+	635.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 6 of 10)	MTB_Mm|LTR|ERVL-MaLR	82874.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	9.29	8.05	13.12	12.47	4.5	7.21	4.65	5.97	9.05	9.04	16.58	9.71
Merged-chr13-99299473-2	chr13	99299375	99299575	+	635.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45203.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	1.62	5.28	1.14	8.04	6.95	2.82	7.31	6.0	10.23	9.04	8.54	10.34
Merged-chr2-4346336-2	chr2	4346228	4346428	+	635.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-54648.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.63	1.01	6.28	7.24	1.64	5.02	3.65	6.76	7.67	3.01	10.55	7.83
Merged-chr10-117848708-2	chr10	117848585	117848785	+	635.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2711.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	9.69	7.04	10.27	3.62	5.73	3.45	3.99	1.85	7.67	2.01	11.05	3.45
Merged-chrX-85879403-2	chrX	85879311	85879511	+	635.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	intron (NM_001163539, intron 1 of 1)	9138.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	2.83	7.8	2.28	4.83	6.55	10.66	8.3	7.65	8.26	7.53	3.01	6.58
Merged-chr2-103345496-2	chr2	103345402	103345602	+	635.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040332, intron 1 of 2)	intron (NR_040332, intron 1 of 2)	27262.0	NR_040332	319854.0	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	2.42	11.57	7.99	7.24	4.91	7.21	1.33	4.74	3.54	1.0	2.01	3.76
Merged-chr9-40343267-2	chr9	40343196	40343396	+	635.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040728)	TTS (NR_040728)	2949.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.85	6.04	22.25	10.46	6.14	4.08	6.31	5.47	11.21	7.03	8.54	6.27
Merged-chr2-26502829-5	chr2	26502764	26502964	+	635.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 1 of 33)	CpG	958.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.46	1.26	2.85	6.84	8.59	4.39	1.99	5.1	4.13	16.07	7.03	2.51
Merged-chr2-5942681-3	chr2	5942590	5942790	+	635.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081131, exon 1 of 17)	5' UTR (NM_001081131, exon 1 of 17)	102.0	NM_001081131	209692.0	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	6.86	8.05	6.85	11.26	1.64	2.51	6.98	5.13	5.51	6.03	6.53	2.82
Merged-chr8-126693820-1	chr8	126693720	126693920	+	635.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-100384.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.23	2.01	4.56	2.82	2.05	0.63	0.66	2.69	8.65	7.53	12.06	6.89
Merged-chr3-115762847-1	chr3	115762747	115762947	+	635.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47792.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.65	5.28	8.56	3.22	2.86	9.09	7.97	3.67	5.9	7.53	7.03	5.01
Merged-chr12-21393986-1	chr12	21393886	21394086	+	635.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011739, intron 4 of 4)	MTD|LTR|ERVL-MaLR	-20354.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.23	3.02	6.28	0.8	0.82	1.57	2.33	0.28	9.05	3.01	12.56	10.02
Merged-chr14-106194313-2	chr14	106194203	106194403	+	635.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	88105.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	10.09	9.31	6.28	4.83	6.55	9.41	6.98	6.56	2.75	1.0	5.53	1.57
Merged-chr3-37656420-2	chr3	37656316	37656516	+	635.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16469.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	9.29	10.06	3.99	6.84	5.32	4.7	4.98	4.65	1.97	0.5	1.51	1.57
Merged-chr14-74643493-2	chr14	74643392	74643592	+	635.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172812, intron 1 of 2)	intron (NM_172812, intron 1 of 2)	2618.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	10.09	12.58	6.28	9.25	7.36	12.54	8.64	5.61	4.13	8.54	4.52	4.7
Merged-chr5-117667090-3	chr5	117666999	117667199	+	635.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 5 of 19)	intron (NM_001312914, intron 5 of 19)	-199740.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	8.48	7.29	12.55	6.44	5.73	5.96	11.29	3.62	14.36	11.55	16.58	9.4
Merged-chr10-18210885-1	chr10	18210785	18210985	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001195036)	promoter-TSS (NM_001195036)	5.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.04	3.27	2.85	0.8	6.55	5.02	3.32	6.95	4.13	0.5	8.04	2.82
Merged-chr10-67538356-2	chr10	67538253	67538453	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010118, exon 1 of 2)	exon (NM_010118, exon 1 of 2)	423.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	6.06	6.04	2.85	8.85	4.91	8.15	5.31	5.8	6.88	4.52	6.03	2.51
Merged-chr2-30769384-1	chr2	30769284	30769484	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32353.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.85	3.27	6.28	6.03	5.32	12.86	1.99	4.26	6.49	6.03	4.52	3.76
Merged-chr17-17906128-2	chr17	17906028	17906228	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18304.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	2.02	6.54	13.69	2.41	3.27	1.88	1.99	3.98	8.65	16.07	5.53	7.52
Merged-chr16-38693579-1	chr16	38693479	38693679	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	MTD|LTR|ERVL-MaLR	19456.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	1.76	7.99	6.44	9.0	4.39	4.98	5.97	6.88	0.5	17.59	8.14
Merged-chr1-51502390-2	chr1	51502274	51502474	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23975.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	1.62	3.02	7.99	0.0	2.45	5.64	8.3	3.62	9.44	3.51	5.02	6.27
Merged-chr4-42961790-3	chr4	42961687	42961887	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8159.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	8.48	7.55	2.28	6.03	7.36	8.15	3.32	5.36	11.8	14.56	8.54	4.07
Merged-chr2-174441744-1	chr2	174441644	174441844	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2705.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.4	1.01	0.0	1.61	8.59	2.51	3.99	5.36	6.49	3.01	3.01	3.45
Merged-chr1-180421357-2	chr1	180421221	180421421	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081175, exon 7 of 8)	exon (NM_001081175, exon 7 of 8)	62183.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	2.42	2.26	2.28	2.01	4.91	0.31	0.66	3.76	0.79	3.01	1.0	8.77
Merged-chr5-140503190-2	chr5	140503081	140503281	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-2428.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	8.08	3.52	2.85	8.45	9.0	7.84	0.33	4.4	11.21	3.51	9.55	1.57
Merged-chr17-46858422-2	chr17	46858290	46858490	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26977.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	2.83	5.28	2.28	7.64	4.5	7.84	2.99	4.26	10.23	10.04	13.06	5.95
Merged-chr15-53288997-2	chr15	53288899	53289099	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	57184.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.04	6.04	14.83	10.05	6.95	2.51	5.31	8.52	3.34	7.53	5.02	0.0
Merged-chr6-82042273-2	chr6	82042139	82042339	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	611.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	3.63	3.27	0.57	11.26	2.45	8.47	6.64	4.23	0.2	0.5	0.0	0.0
Merged-chr15-88750264-2	chr15	88750145	88750345	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1466.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	4.85	4.28	5.7	4.83	5.32	7.21	4.98	2.75	11.01	8.54	7.03	3.76
Merged-chr6-125137510-2	chr6	125137413	125137613	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138747, intron 8 of 15)	intron (NM_138747, intron 8 of 15)	5630.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	3.23	4.78	7.99	4.83	4.09	8.47	1.99	5.27	7.87	1.0	2.01	8.77
Merged-chr3-136165456-1	chr3	136165356	136165556	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	160610.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	6.46	5.28	9.13	12.47	10.23	7.53	4.32	6.67	1.57	0.0	3.01	4.7
Merged-chr11-94716951-2	chr11	94716828	94717028	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-12429.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	2.42	4.02	1.14	7.24	7.36	5.96	3.65	5.3	7.87	8.54	7.03	6.27
Merged-chr18-88911078-1	chr18	88910978	88911178	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16871.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	2.77	1.71	0.8	7.77	8.47	3.99	5.69	2.16	1.0	2.01	0.94
Merged-chr18-39253972-1	chr18	39253872	39254072	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	233273.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.65	1.51	2.28	8.04	5.73	4.39	2.66	6.0	3.74	2.01	6.53	2.82
Merged-chr17-33900896-2	chr17	33900779	33900979	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-4256.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	3.23	8.55	7.99	4.83	7.77	9.41	1.66	2.21	7.87	12.05	9.04	8.46
Merged-chr10-57725696-2	chr10	57725603	57725803	+	635.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	MIRc|SINE|MIR	-59220.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.67	8.05	3.42	7.24	7.77	9.41	4.65	6.31	7.08	16.07	15.58	5.64
Merged-chr17-51814569-2	chr17	51814445	51814645	+	635.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163632, intron 1 of 10)	intron (NM_001163632, intron 1 of 10)	-2361.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	7.67	5.79	10.27	14.88	7.36	4.7	4.98	11.21	8.26	4.02	5.02	5.01
Merged-chr7-104231399-2	chr7	104231300	104231500	+	635.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013616, intron 5 of 7)	intron (NM_001013616, intron 5 of 7)	12605.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	8.08	9.81	5.13	9.65	7.77	11.29	2.66	7.71	6.69	1.0	4.02	1.57
Merged-chr5-117494202-2	chr5	117494100	117494300	+	635.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80198.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	8.08	6.04	2.85	12.47	4.5	5.96	2.66	3.95	5.7	2.51	14.57	3.13
Merged-chr1-132390376-2	chr1	132390248	132390448	+	635.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	-30.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.44	5.79	4.56	6.44	2.45	6.27	2.99	4.85	4.52	1.51	6.03	1.57
Merged-chr1-135724381-2	chr1	135724287	135724487	+	635.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	4324.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	10.5	12.83	11.98	10.46	0.41	3.14	3.32	1.37	9.44	8.03	3.52	3.76
Merged-chr2-52901024-2	chr2	52900915	52901115	+	635.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	Lx8|LINE|L1	43147.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.46	2.01	8.56	7.24	6.95	4.7	3.32	4.01	16.72	12.05	6.53	8.77
Merged-chr11-48903110-1	chr11	48903010	48903210	+	635.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-958.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	8.08	3.52	9.13	3.62	6.95	6.27	4.98	6.08	5.9	8.03	10.55	5.01
Merged-chr14-103844487-1	chr14	103844387	103844587	+	635.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-11.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.85	1.51	7.42	5.63	5.73	7.53	5.31	5.55	1.97	4.02	4.02	5.01
Merged-chr17-79580435-3	chr17	79580341	79580541	+	635.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34459.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	10.5	4.28	6.28	12.87	9.41	4.7	3.32	7.93	13.96	13.56	9.04	10.02
Merged-chr9-23581181-1	chr9	23581081	23581281	+	635.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	358105.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	4.44	4.02	10.27	5.63	8.59	7.53	4.98	6.25	11.8	7.03	7.54	2.82
Merged-chr17-31047812-2	chr17	31047712	31047912	+	635.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9882.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.23	6.04	11.98	6.44	6.95	6.59	3.65	11.5	6.69	6.53	6.03	1.57
Merged-chr11-107512100-3	chr11	107511991	107512191	+	635.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	32563.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	8.48	6.54	7.99	5.63	7.36	11.29	1.33	7.37	16.92	7.03	11.56	8.14
Merged-chr1-58873149-3	chr1	58873054	58873254	+	635.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	70652.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	8.88	5.28	7.99	9.25	4.5	9.41	11.29	5.16	9.44	10.04	8.54	8.77
Merged-chr19-16009846-3	chr19	16009750	16009950	+	635.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24775.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.02	8.3	12.55	8.85	9.82	11.6	7.31	7.57	11.41	11.05	10.05	6.27
Merged-chr4-62359457-3	chr4	62359294	62359494	+	635.055542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	1202.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	2.42	5.53	6.28	4.83	7.77	8.47	5.65	4.21	8.06	7.53	12.56	10.34
Merged-chr6-38066363-1	chr6	38066263	38066463	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-19367.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	7.67	4.28	1.71	6.03	8.59	5.33	11.63	4.91	8.46	2.01	7.03	3.45
Merged-chr5-150601394-1	chr5	150601294	150601494	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6869.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.44	11.07	9.13	9.25	7.77	10.03	9.3	6.22	6.69	12.05	6.53	8.14
Merged-chr10-79866069-1	chr10	79865969	79866169	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_181681, exon 7 of 7)	exon (NM_181681, exon 7 of 7)	3482.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	6.46	14.59	5.13	0.8	6.55	5.02	9.3	6.11	5.31	8.03	4.02	4.39
Merged-chr9-89872337-2	chr9	89872211	89872411	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37464.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	6.86	9.81	3.42	4.42	2.45	12.54	4.98	4.79	18.29	9.04	16.58	6.89
Merged-chr13-40869253-1	chr13	40869153	40869353	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023887, intron 1 of 2)	intron (NM_023887, intron 1 of 2)	9485.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.81	4.02	2.28	2.82	3.68	7.53	1.33	5.94	3.34	1.51	1.51	0.31
Merged-chr16-95825849-1	chr16	95825749	95825949	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72864.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.85	3.02	8.56	3.22	3.27	2.51	7.31	5.58	3.93	6.53	3.52	4.39
Merged-chr17-84204288-1	chr17	84204188	84204388	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 36 of 37)	ORR1D2|LTR|ERVL-MaLR	-16341.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.46	4.78	3.42	6.84	8.59	13.48	5.31	2.41	4.52	3.01	8.54	9.08
Merged-chr2-118016015-1	chr2	118015915	118016115	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	ORR1D2|LTR|ERVL-MaLR	95187.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	2.83	6.54	15.97	10.46	5.32	2.51	1.99	4.85	0.0	0.5	1.0	0.31
Merged-chr10-40489274-1	chr10	40489174	40489374	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81088.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	1.62	5.79	5.13	4.42	6.55	2.51	3.65	4.26	9.24	11.05	4.52	7.52
Merged-chr5-115474485-1	chr5	115474385	115474585	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_151517, intron 2 of 2)	intron (NR_151517, intron 2 of 2)	8343.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	7.67	7.55	8.56	1.61	2.45	5.64	2.66	3.62	3.74	3.51	7.03	2.51
Merged-chr4-44173351-2	chr4	44173237	44173437	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5054.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	5.25	5.28	9.13	8.04	13.91	9.72	4.98	6.31	10.23	5.52	11.05	5.95
Merged-chr3-88775288-1	chr3	88775188	88775388	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-1769.0	NR_028359	100302730.0	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	8.48	8.8	6.28	6.84	2.86	6.59	4.32	0.08	2.75	5.02	2.01	2.82
Merged-chr1-6467167-1	chr1	6467067	6467267	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20064.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	6.06	7.04	4.56	2.41	3.27	6.9	1.99	8.92	7.08	3.51	6.03	5.95
Merged-chr16-24946604-1	chr16	24946504	24946704	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-113035.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	1.76	2.28	3.22	2.86	4.39	1.99	4.71	2.36	3.51	5.02	2.82
Merged-chr10-3944087-1	chr10	3943987	3944187	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-28988.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.63	3.52	3.42	3.62	5.73	1.88	3.32	4.65	5.9	2.01	11.05	4.07
Merged-chr8-120404761-1	chr8	120404661	120404861	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84105.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	2.42	6.54	1.71	2.41	7.77	1.57	3.99	6.42	7.08	3.51	5.53	5.01
Merged-chr1-151572820-2	chr1	151572713	151572913	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	Lx4A|LINE|L1	1440.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	2.83	5.03	1.14	4.83	5.73	11.29	9.63	4.18	8.06	11.05	12.56	7.83
Merged-chr16-87652668-1	chr16	87652568	87652768	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-46286.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.02	7.29	6.85	3.62	4.09	5.96	9.97	5.97	8.65	4.52	11.05	1.88
Merged-chrX-36552488-1	chrX	36552388	36552588	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45705.0	NM_016783	53328.0	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema|mPR	progesterone receptor membrane component 1	protein-coding	0.81	3.02	1.71	7.64	6.14	2.51	3.65	3.9	0.79	1.51	1.0	4.7
Merged-chr1-152529813-1	chr1	152529713	152529913	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95404.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.44	13.33	3.99	9.25	1.23	2.82	4.65	2.64	6.88	13.05	8.04	7.52
Merged-chr5-140648110-1	chr5	140648010	140648210	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	921.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.81	4.02	3.99	7.24	5.73	3.45	3.32	3.53	5.9	4.02	3.52	5.64
Merged-chr15-25302541-1	chr15	25302441	25302641	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	111223.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.06	8.55	14.26	8.04	7.36	6.59	3.99	5.33	13.77	9.54	13.57	5.64
Merged-chr3-75553313-2	chr3	75553226	75553426	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	3526.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	6.06	4.53	9.7	4.02	9.0	3.76	10.3	5.24	7.28	6.03	11.56	9.08
Merged-chrX-162828269-1	chrX	162828169	162828369	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290777, intron 1 of 5)	intron (NM_001290777, intron 1 of 5)	1185.0	NM_001290776	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	9.69	3.02	6.28	2.41	1.64	7.84	3.32	4.91	2.56	7.53	9.04	3.76
Merged-chr1-85652069-1	chr1	85651969	85652169	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013673, intron 1 of 19)	RSINE1|SINE|B4	2081.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	2.42	4.02	1.71	0.8	9.0	4.39	3.65	6.42	4.72	2.51	2.51	2.19
Merged-chr10-61683054-1	chr10	61682954	61683154	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358488, intron 2 of 7)	intron (NM_001358488, intron 2 of 7)	-2764.0	NR_126477	75539.0		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	4.85	5.79	9.7	1.21	4.91	10.98	1.33	0.98	5.11	4.02	3.52	2.51
Merged-chr11-63402930-1	chr11	63402830	63403030	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270127.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.25	3.02	1.14	1.61	0.0	2.82	0.66	0.39	7.08	10.54	12.56	5.01
Merged-chr3-8691193-1	chr3	8691093	8691293	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	5.25	5.03	3.99	7.24	7.36	4.39	2.99	3.56	4.92	11.55	7.54	10.65
Merged-chr4-152008299-1	chr4	152008199	152008399	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-592.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	6.86	1.01	1.14	1.21	2.45	5.02	5.65	4.07	4.72	3.51	3.52	1.25
Merged-chr17-50995974-1	chr17	50995874	50996074	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	163404.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.81	3.27	11.98	0.8	6.95	4.08	3.32	4.68	5.51	8.54	2.01	5.01
Merged-chr19-61097915-1	chr19	61097815	61098015	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131953, intron 3 of 6)	intron (NR_131953, intron 3 of 6)	42925.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	8.48	2.01	3.42	2.41	5.32	8.47	1.99	4.68	2.75	9.54	4.52	4.7
Merged-chr3-142708227-1	chr3	142708127	142708327	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173763, intron 2 of 13)	RLTR45|LTR|ERVK	7179.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	4.53	6.85	6.44	5.73	6.9	4.98	3.59	3.15	3.01	14.07	6.58
Merged-chr11-54070015-1	chr11	54069915	54070115	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	-998.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	2.42	1.26	1.71	5.63	2.45	2.82	5.65	1.51	7.08	0.0	2.01	4.07
Merged-chr18-68143085-1	chr18	68142985	68143185	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	L1_Mur3|LINE|L1	-84861.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.83	1.51	7.99	4.83	0.82	2.51	4.98	5.3	3.74	2.01	5.02	3.45
Merged-chr11-109441280-1	chr11	109441180	109441380	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040680, intron 1 of 1)	B3|SINE|B2	1202.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	3.23	4.53	9.13	2.01	5.73	6.9	4.32	5.21	1.97	7.53	6.03	2.82
Merged-chr4-117537192-1	chr4	117537092	117537292	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13132.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	3.23	2.52	2.28	3.22	8.18	2.51	3.32	5.33	3.74	0.0	1.0	0.31
Merged-chr15-78268037-2	chr15	78267948	78268148	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16801.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	2.42	2.01	1.71	3.22	4.09	6.27	6.64	7.23	10.23	9.54	12.06	6.58
Merged-chr12-102703334-1	chr12	102703234	102703434	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	1535.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.86	4.28	3.42	3.22	5.73	3.45	2.33	2.61	4.72	7.03	8.04	2.82
Merged-chr5-44127722-1	chr5	44127622	44127822	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25986.0	NM_001163577	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.81	3.27	1.71	0.8	3.27	4.39	2.66	5.33	10.82	3.51	12.06	3.13
Merged-chr9-41044768-1	chr9	41044668	41044868	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	34738.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.83	4.02	5.7	2.41	9.82	4.08	9.3	2.1	11.6	6.53	5.53	1.25
Merged-chr17-72814148-2	chr17	72814070	72814270	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22458.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.04	7.04	3.99	4.02	3.68	3.14	9.63	6.62	7.67	4.02	7.03	5.64
Merged-chr11-102604254-1	chr11	102604154	102604354	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020510)	promoter-TSS (NM_020510)	-177.0	NM_020510	57265.0	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	6.46	1.26	12.55	4.83	5.32	4.08	3.65	4.23	13.37	15.57	12.06	8.46
Merged-chr5-43846556-1	chr5	43846456	43846656	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-22253.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.06	1.76	1.71	5.63	8.59	1.57	5.31	6.25	2.56	1.51	4.02	3.13
Merged-chr14-51931011-2	chr14	51930917	51931117	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8244.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	6.06	7.8	11.41	4.02	6.14	8.15	5.98	6.87	5.11	3.01	1.0	2.19
Merged-chr4-48051823-1	chr4	48051723	48051923	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001307989, exon 1 of 3)	exon (NM_001307989, exon 1 of 3)	577.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	2.42	4.53	5.7	6.84	0.82	7.53	5.31	4.79	5.9	5.52	5.53	3.13
Merged-chr4-155869045-1	chr4	155868945	155869145	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	395.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	2.42	4.28	1.71	6.03	4.5	5.96	3.65	6.0	5.31	10.04	7.54	5.33
Merged-chrX-48461049-1	chrX	48460949	48461149	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	2083.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	3.63	4.78	6.85	0.8	0.82	2.82	2.33	3.28	8.26	4.02	12.56	4.7
Merged-chr7-30669391-3	chr7	30669228	30669428	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	2277.0	NR_027849	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	4.04	7.55	7.99	5.23	6.55	8.47	6.98	3.62	6.29	6.03	5.53	3.45
Merged-chr14-48590615-1	chr14	48590515	48590715	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72119.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.0	2.77	1.14	0.0	4.09	3.45	4.65	7.77	0.0	0.0	0.0	0.63
Merged-chrX-38642356-1	chrX	38642256	38642456	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7213.0	NM_021550	59048.0	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.4	0.0	5.7	1.61	1.64	2.51	4.98	3.76	3.74	4.02	5.02	3.76
Merged-chr9-45093966-1	chr9	45093866	45094066	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	14783.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	6.06	3.52	9.13	9.25	3.68	5.02	5.98	6.98	2.16	0.0	1.0	2.82
Merged-chr19-12805870-1	chr19	12805770	12805970	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 2 of 8)	L2|LINE|L2	7291.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	3.63	3.02	3.99	2.82	9.41	2.82	4.65	2.38	5.51	3.01	0.5	5.01
Merged-chr2-52537772-1	chr2	52537672	52537872	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	20839.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.23	2.52	4.56	0.8	2.45	4.7	3.65	5.38	2.75	2.01	1.51	1.25
Merged-chr10-53471441-1	chr10	53471341	53471541	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	47548.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	7.27	7.55	6.85	1.61	2.45	13.48	3.99	0.64	8.26	11.05	9.55	1.88
Merged-chr7-29380633-1	chr7	29380533	29380733	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081028, intron 9 of 22)	L1ME3Cz|LINE|L1	76628.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	2.02	2.52	2.28	4.02	0.82	2.51	4.98	5.33	4.13	3.01	1.0	5.64
Merged-chr18-70580840-1	chr18	70580740	70580940	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010773, intron 2 of 6)	intron (NM_010773, intron 2 of 6)	12548.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.44	3.52	5.13	4.02	2.45	5.33	1.99	6.08	0.59	4.52	3.01	1.57
Merged-chr11-107467357-1	chr11	107467257	107467457	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	3363.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.06	1.76	3.42	0.0	2.05	3.76	4.98	6.87	2.75	2.01	4.52	3.13
Merged-chr6-66964399-1	chr6	66964299	66964499	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	67508.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	9.29	6.04	5.7	4.42	4.91	2.51	4.32	2.92	2.75	1.51	4.02	3.45
Merged-chr13-49108231-1	chr13	49108131	49108331	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	40097.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	2.42	1.76	2.28	1.61	0.0	1.57	4.98	5.07	2.75	3.51	3.52	1.25
Merged-chr15-41163034-1	chr15	41162934	41163134	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10667.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	4.04	2.26	2.85	0.8	6.55	2.2	1.66	5.61	3.93	5.02	4.52	2.51
Merged-chr11-100169265-1	chr11	100169165	100169365	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23339.0	NM_008471	16669.0	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	1.62	1.01	0.0	1.61	1.23	6.59	2.66	3.7	2.36	1.51	3.52	1.88
Merged-chr10-121641856-1	chr10	121641756	121641956	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177335, exon 1 of 13)	exon (NM_177335, exon 1 of 13)	155.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	0.81	5.53	0.0	2.01	4.5	3.45	8.3	5.3	3.74	1.51	5.53	4.07
Merged-chr13-9611417-1	chr13	9611317	9611517	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 22 of 36)	intron (NM_001081426, intron 22 of 36)	152393.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.65	2.26	4.56	7.24	1.64	1.25	7.31	5.58	2.36	1.0	2.51	1.88
Merged-chr7-80091180-1	chr7	80091080	80091280	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-15923.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.04	3.52	5.7	2.01	2.45	3.45	5.98	5.8	3.54	4.52	4.52	5.64
Merged-chr1-138841792-1	chr1	138841692	138841892	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025565, intron 1 of 4)	CpG	652.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	3.63	1.76	1.71	6.03	5.73	1.25	2.33	4.04	6.1	4.02	5.53	2.19
Merged-chr17-43303311-1	chr17	43303211	43303411	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133776, intron 8 of 15)	intron (NM_133776, intron 8 of 15)	32964.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	2.42	6.04	0.0	8.45	3.27	14.11	10.63	4.57	10.82	4.02	11.05	3.45
Merged-chrX-104483204-1	chrX	104483104	104483304	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081189, exon 1 of 7)	exon (NM_001081189, exon 1 of 7)	422.0	NM_001081189	331487.0	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	7.27	3.77	2.28	11.66	6.14	1.57	13.62	6.67	5.9	4.52	7.54	2.51
Merged-chr9-122120254-1	chr9	122120154	122120354	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	2795.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	7.27	6.29	2.85	4.83	6.95	1.25	4.65	5.64	7.28	2.01	6.53	7.21
Merged-chr13-29290792-1	chr13	29290692	29290892	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	274537.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	2.83	0.5	2.85	10.05	1.23	0.0	4.98	4.88	2.56	1.0	9.04	3.76
Merged-chr15-25364739-2	chr15	25364636	25364836	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49028.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.02	7.29	3.42	2.41	4.91	5.96	9.97	5.61	4.52	8.03	13.06	2.82
Merged-chr6-87840622-2	chr6	87840530	87840730	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1871.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	7.27	5.79	1.71	0.0	5.73	0.63	1.0	5.58	5.9	0.5	15.58	8.77
Merged-chr11-75158736-1	chr11	75158636	75158836	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 16 of 18)	intron (NM_001002764, intron 16 of 18)	9416.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.23	2.77	9.13	6.44	7.77	5.02	6.31	5.33	3.54	2.01	7.03	0.0
Merged-chr11-6273876-1	chr11	6273776	6273976	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134020, exon 4 of 5)	exon (NM_134020, exon 4 of 5)	961.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	4.85	4.02	2.28	2.01	3.68	5.33	8.97	5.47	1.18	3.51	5.02	4.07
Merged-chr15-64031877-1	chr15	64031777	64031977	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	27887.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.81	2.52	2.28	2.41	3.68	7.21	1.0	4.46	5.9	5.52	1.51	0.63
Merged-chr12-54317297-1	chr12	54317197	54317397	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74021.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.5	0.0	0.0	0.0	0.31	0.0	0.0	2.16	3.51	3.01	0.63
Merged-chr7-4227086-1	chr7	4226986	4227186	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-10668.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	7.28	4.02	9.55	9.08
Merged-chr4-154927600-1	chr4	154927500	154927700	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178931, intron 1 of 7)	intron (NM_178931, intron 1 of 7)	477.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.42	2.77	2.28	3.62	3.27	1.57	2.99	2.1	9.64	9.54	13.57	3.45
Merged-chr3-152111209-2	chr3	152111120	152111320	+	634.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	54680.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	8.88	2.26	2.28	8.45	11.45	5.64	7.64	5.44	5.51	4.02	5.02	1.25
Merged-chr1-74313505-2	chr1	74313415	74313615	+	634.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9179.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	3.23	2.77	6.28	6.03	6.95	10.35	1.99	3.7	9.24	2.51	4.52	7.83
Merged-chr15-5739794-2	chr15	5739699	5739899	+	634.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	243481.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	8.88	7.8	5.13	9.25	6.55	6.59	2.66	12.87	10.62	2.51	5.53	4.07
Merged-chr3-81099443-1	chr3	81099343	81099543	+	634.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	RSINE1|SINE|B4	63027.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.44	1.26	2.28	6.03	9.41	8.78	4.65	4.85	6.29	5.52	7.03	4.7
Merged-chr7-129307147-2	chr7	129307048	129307248	+	634.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	50054.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.81	3.52	0.0	2.01	8.18	7.21	1.66	5.36	7.28	14.06	9.04	8.46
Merged-chr5-100569506-2	chr5	100569394	100569594	+	634.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	2711.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.65	8.05	7.42	9.25	11.45	7.84	6.64	4.15	13.18	10.54	9.55	6.58
Merged-chr5-106802571-3	chr5	106802500	106802700	+	634.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105770.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	5.65	2.52	9.13	7.24	5.32	6.27	8.97	6.45	9.24	5.02	15.07	7.52
Merged-chr7-126628213-1	chr7	126628113	126628313	+	634.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2743.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	4.04	7.04	0.0	2.01	4.91	6.9	5.98	2.94	10.23	8.54	8.04	5.64
Merged-chr12-26311719-1	chr12	26311619	26311819	+	634.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 8 of 8)	intron (NM_080563, intron 8 of 8)	-34991.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	4.04	5.79	7.99	8.04	6.55	5.02	4.32	5.61	3.93	6.53	8.04	3.45
Merged-chr4-152096201-2	chr4	152096110	152096310	+	634.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285999)	promoter-TSS (NM_001285999)	-509.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	2.83	4.53	3.99	0.8	7.36	5.96	5.65	6.0	8.06	2.51	9.04	4.7
Merged-chr1-92641301-2	chr1	92641195	92641395	+	634.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	653.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	7.67	7.29	3.42	6.84	3.27	5.64	9.63	5.33	6.49	8.03	9.04	7.52
Merged-chr5-43883860-2	chr5	43883776	43883976	+	634.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	15067.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.85	5.79	11.98	6.84	8.59	9.09	4.98	6.11	5.9	6.53	4.02	10.02
Merged-chr1-92906132-3	chr1	92906010	92906210	+	634.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-879.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	9.29	8.55	11.98	11.26	4.09	5.33	1.33	5.41	11.01	6.03	13.57	6.89
Merged-chr10-19527493-1	chr10	19527393	19527593	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	32850.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	6.46	1.76	5.7	3.62	12.68	6.27	3.65	4.82	9.64	3.01	1.0	7.83
Merged-chr6-142346323-1	chr6	142346223	142346423	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183165, intron 1 of 11)	intron (NM_183165, intron 1 of 11)	626.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	2.83	5.79	3.42	1.61	6.14	3.14	5.98	4.49	6.69	2.51	2.51	5.01
Merged-chr2-37757158-1	chr2	37757058	37757258	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19091.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	4.04	3.02	4.56	1.21	4.09	5.33	4.32	8.55	4.13	2.01	8.04	1.88
Merged-chr16-78302513-1	chr16	78302413	78302613	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	842.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.4	5.03	0.0	2.41	0.0	5.02	4.98	5.64	1.57	3.01	2.01	1.57
Merged-chr15-37906279-2	chr15	37906167	37906367	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54589.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	6.06	2.52	3.42	1.61	0.0	3.76	3.65	4.23	8.26	4.52	5.53	6.89
Merged-chr15-10885766-1	chr15	10885666	10885866	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	56715.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	4.04	4.02	5.13	4.83	3.68	5.33	6.98	6.39	7.87	2.51	5.02	3.13
Merged-chr3-59220189-1	chr3	59220089	59220289	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357007, intron 1 of 2)	intron (NM_001357007, intron 1 of 2)	-9307.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.85	3.27	1.14	1.21	6.95	4.08	5.98	5.92	0.98	2.01	4.02	0.63
Merged-chr14-58322721-1	chr14	58322621	58322821	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	250035.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	8.05	0.57	2.01	7.36	5.02	2.99	5.78	6.1	5.52	3.52	5.01
Merged-chr1-179760809-2	chr1	179760708	179760908	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026375, intron 29 of 35)	B1_Mus1|SINE|Alu	43207.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	1.62	3.02	5.7	1.61	9.41	4.08	3.65	11.55	6.88	4.02	6.53	6.58
Merged-chr7-110242185-2	chr7	110242090	110242290	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	20487.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	8.88	3.77	1.14	6.84	9.0	3.76	1.33	5.83	7.08	0.0	11.05	1.88
Merged-chr6-65126314-1	chr6	65126214	65126414	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	18416.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	9.69	2.77	2.28	7.64	4.5	5.64	3.99	6.45	8.85	6.53	5.02	3.45
Merged-chr4-150438820-3	chr4	150438735	150438935	+	634.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 3 of 22)	intron (NM_001085492, intron 3 of 22)	156919.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	9.69	4.28	8.56	11.26	2.45	6.27	6.64	5.61	12.19	9.04	14.07	7.52
Merged-chr2-29670880-2	chr2	29670765	29670965	+	634.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51145.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	10.9	5.03	10.27	8.45	5.32	4.39	4.65	5.94	10.23	8.03	6.03	7.83
Merged-chr17-8372890-2	chr17	8372785	8372985	+	634.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161832, intron 1 of 10)	intron (NM_001161832, intron 1 of 10)	489.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	7.67	5.53	0.0	4.42	11.05	10.66	4.98	4.37	8.46	3.51	12.06	12.53
Merged-chr2-170153016-1	chr2	170152916	170153116	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-10341.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.04	2.01	2.85	3.22	3.68	6.9	6.98	4.37	5.31	5.02	3.52	7.21
Merged-chr8-126873374-1	chr8	126873274	126873474	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	24354.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	5.65	3.52	2.85	2.41	6.95	6.59	1.66	4.4	7.28	11.55	7.03	1.88
Merged-chr6-22418492-1	chr6	22418392	22418592	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62411.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	1.21	1.01	2.28	5.23	3.68	6.27	8.64	4.57	2.75	2.01	6.53	1.25
Merged-chr13-20728268-1	chr13	20728168	20728368	+	634.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65845.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.85	6.04	7.42	6.03	4.09	2.51	3.32	7.77	11.21	6.53	12.56	8.46
Merged-chr11-25849406-1	chr11	25849306	25849506	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-352834.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	1.61	6.55	7.21	8.64	5.52	5.51	2.01	3.01	2.82
Merged-chr4-130816900-1	chr4	130816800	130817000	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011520, exon 2 of 5)	exon (NM_011520, exon 2 of 5)	24363.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	1.21	1.51	0.0	4.42	6.55	4.08	7.97	9.59	3.74	7.03	8.54	8.46
Merged-chr8-121652180-3	chr8	121652051	121652251	+	634.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080855)	promoter-TSS (NM_080855)	-218.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	8.88	4.02	11.41	6.44	7.77	10.03	7.64	4.35	2.36	8.54	15.07	3.13
Merged-chr1-194978245-1	chr1	194978145	194978345	+	634.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1286.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.04	3.02	2.28	8.85	10.23	6.27	6.98	4.57	10.23	3.51	8.04	4.07
Merged-chr11-115047224-2	chr11	115047164	115047364	+	634.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199201, intron 1 of 3).2	B4A|SINE|B4	1031.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	2.83	4.78	10.27	8.04	7.36	6.59	5.98	4.21	2.95	10.54	1.0	5.01
Merged-chr12-110738568-1	chr12	110738468	110738668	+	634.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	CpG	636.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.06	2.52	4.56	1.61	3.27	5.33	8.64	2.94	5.11	8.03	5.53	7.52
Merged-chr6-124724609-1	chr6	124724509	124724709	+	634.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-6219.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	2.02	2.52	5.13	0.8	4.09	2.2	6.98	1.91	7.67	9.04	12.06	5.64
Merged-chr9-99242252-3	chr9	99242141	99242341	+	634.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1100.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	8.48	11.07	6.28	5.23	9.0	6.27	1.0	3.64	10.62	12.55	1.51	8.46
Merged-chr11-94329680-2	chr11	94329566	94329766	+	634.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	1665.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	5.25	6.29	6.85	6.03	16.36	10.98	5.65	5.75	5.51	8.03	4.02	8.14
Merged-chr16-55858680-2	chr16	55858575	55858775	+	634.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-20034.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.69	4.02	5.7	4.83	6.95	11.92	5.98	5.66	7.67	14.56	7.54	9.4
Merged-chr2-158310864-2	chr2	158310789	158310989	+	634.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008489, intron 3 of 14)	intron (NM_008489, intron 3 of 14)	4396.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	11.31	6.04	14.83	10.05	0.82	0.0	0.33	0.56	6.88	9.04	16.58	8.77
Merged-chrX-164454396-1	chrX	164454296	164454496	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001313737, exon 5 of 7)	exon (NM_001313737, exon 5 of 7)	17402.0	NM_001313737	68854.0	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.81	3.52	0.0	6.44	6.14	5.02	6.31	5.41	1.77	4.52	5.02	6.27
Merged-chr2-6295233-1	chr2	6295133	6295333	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-27524.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.86	4.28	13.12	2.01	4.91	4.7	2.33	6.79	7.08	5.52	17.59	5.33
Merged-chr4-88214108-1	chr4	88214008	88214208	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081184, intron 11 of 43)	RMER15|LTR|ERVL	92068.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	2.42	0.5	0.0	0.8	2.86	6.59	3.32	5.66	2.95	0.0	2.51	0.31
Merged-chr6-67532824-1	chr6	67532724	67532924	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2998.0	NM_020047	56753.0	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.0	0.75	0.0	0.8	0.82	3.76	1.99	4.29	0.2	0.0	3.52	0.94
Merged-chrX-98938828-1	chrX	98938728	98938928	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207633, intron 1 of 6)	intron (NM_207633, intron 1 of 6)	1047.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	3.63	2.01	4.56	2.41	1.64	8.15	3.65	2.75	0.39	4.52	3.01	5.33
Merged-chr19-41317826-1	chr19	41317726	41317926	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53822.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.04	1.51	4.56	4.83	9.82	9.09	1.66	2.21	7.08	4.02	6.03	4.07
Merged-chr10-60933950-1	chr10	60933850	60934050	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4182.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	2.02	0.25	0.0	0.0	5.73	5.64	5.31	4.37	7.28	4.02	6.53	7.83
Merged-chr4-3835018-1	chr4	3834918	3835118	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026147, intron 2 of 3)	intron (NM_026147, intron 2 of 3)	637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.85	2.26	5.13	3.22	6.55	1.88	4.65	4.51	6.69	5.52	7.03	1.25
Merged-chr2-19659192-1	chr2	19659092	19659292	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027715, exon 1 of 1)	exon (NM_027715, exon 1 of 1)	1130.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	4.44	6.54	2.85	3.22	3.68	10.03	5.31	5.44	9.44	10.04	9.04	4.7
Merged-chr12-33311883-1	chr12	33311783	33311983	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	9368.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.25	0.75	9.13	1.21	0.41	5.64	4.98	5.05	3.93	7.53	11.05	3.13
Merged-chr3-69257267-1	chr3	69257167	69257367	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34848.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.85	2.01	4.56	5.63	1.64	7.21	1.66	4.63	4.13	4.02	12.06	7.21
Merged-chr7-109671730-1	chr7	109671630	109671830	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32007.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	2.42	3.52	1.71	7.64	2.86	3.45	5.98	4.01	3.54	2.01	3.52	4.39
Merged-chr12-31826052-1	chr12	31825952	31826152	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163126, intron 11 of 22)	intron (NM_001163126, intron 11 of 22)	-112126.0	NM_175191	73010.0	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	5.65	4.02	0.57	5.23	4.91	6.59	4.65	6.14	0.59	0.0	0.5	0.94
Merged-chr4-84079083-1	chr4	84078983	84079183	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34204.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	1.62	4.28	7.42	6.03	4.09	5.33	2.33	4.99	0.0	1.0	1.0	0.63
Merged-chr10-75330325-1	chr10	75330225	75330425	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009630, intron 2 of 2)	intron (NM_009630, intron 2 of 2)	5467.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	4.85	5.03	6.85	0.0	0.82	10.35	3.32	0.87	9.44	8.03	6.03	1.25
Merged-chr8-85499340-1	chr8	85499240	85499440	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173866, intron 2 of 11)	B3A|SINE|B2	6723.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.44	7.55	6.28	6.03	7.77	5.96	5.31	5.24	6.69	7.03	3.52	3.76
Merged-chr13-91452476-1	chr13	91452376	91452576	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8621.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	6.06	5.03	4.56	4.02	5.73	4.08	6.31	5.36	1.18	3.51	3.01	1.88
Merged-chr12-106026990-1	chr12	106026890	106027090	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	16727.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	8.88	2.01	4.56	8.45	3.68	5.96	0.33	5.13	2.56	6.03	5.02	3.76
Merged-chr16-31366652-1	chr16	31366552	31366752	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41362.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	5.25	3.02	2.28	6.44	8.59	5.33	2.99	5.89	0.98	2.01	5.53	5.01
Merged-chr12-91869461-1	chr12	91869361	91869561	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20304.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	2.83	2.77	4.56	0.4	6.14	5.33	3.99	4.63	4.72	4.02	9.04	2.82
Merged-chr8-70503212-1	chr8	70503112	70503312	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	3214.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	9.29	4.78	3.99	2.41	4.91	5.64	2.99	5.94	12.98	6.53	7.03	4.7
Merged-chr15-8038019-1	chr15	8037919	8038119	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081402, intron 7 of 17)	intron (NM_001081402, intron 7 of 17)	61190.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	2.42	3.27	5.7	0.8	4.09	5.33	1.99	5.69	2.16	1.51	6.03	8.46
Merged-chr17-70836781-1	chr17	70836681	70836881	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	9996.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	12.92	6.79	2.28	3.22	2.45	3.45	1.33	2.86	3.93	2.01	5.53	2.19
Merged-chr18-20740287-1	chr18	20740187	20740387	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	6117.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	2.42	0.5	2.28	2.41	1.64	12.54	3.32	4.79	4.52	11.55	9.55	2.51
Merged-chr4-129086258-2	chr4	129086141	129086341	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19289.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	6.06	9.81	1.71	8.04	5.32	4.7	1.33	5.38	7.28	6.03	2.51	3.13
Merged-chr19-5640192-1	chr19	5640092	5640292	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009045, intron 5 of 10)	intron (NM_009045, intron 5 of 10)	2702.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	4.44	3.27	8.56	6.84	13.09	1.57	4.98	3.06	9.05	4.02	5.02	5.64
Merged-chr4-93584696-1	chr4	93584596	93584796	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	-249185.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	2.83	3.27	4.56	1.61	0.41	0.31	1.66	1.07	3.93	1.51	0.0	1.88
Merged-chr11-113763518-1	chr11	113763418	113763618	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11703.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	1.21	7.04	12.55	1.21	0.0	0.0	0.0	0.0	7.08	1.0	4.52	6.27
Merged-chr2-166564063-2	chr2	166563969	166564169	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152154)	promoter-TSS (NR_152154)	-453.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	8.88	9.06	6.85	10.05	4.5	4.7	2.66	4.23	7.67	7.03	6.03	4.7
Merged-chr15-42835019-1	chr15	42834919	42835119	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158042.0	NM_009640	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.4	8.55	13.69	1.21	3.68	2.82	0.66	0.73	6.49	1.51	3.52	7.83
Merged-chr5-88766260-2	chr5	88766176	88766376	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	1263.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	3.63	3.52	1.14	3.22	1.64	5.64	0.66	4.99	9.05	4.52	5.53	9.71
Merged-chr2-130862225-1	chr2	130862125	130862325	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22080.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	6.46	2.26	1.14	8.04	1.64	9.09	1.66	7.77	5.11	3.01	1.0	2.19
Merged-chr12-99333649-2	chr12	99333555	99333755	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	116419.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.63	8.3	3.42	7.24	4.91	4.39	4.65	6.59	12.19	12.05	15.58	4.39
Merged-chr4-43043276-1	chr4	43043176	43043376	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	B1_Mus2|SINE|Alu	2944.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	3.23	3.52	0.0	6.03	3.27	4.39	2.66	1.65	5.9	4.02	4.52	6.58
Merged-chr2-167420848-3	chr2	167420734	167420934	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-876.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	2.02	7.55	1.14	1.61	2.86	4.7	5.31	4.96	5.9	17.57	10.05	5.95
Merged-chr2-154890263-1	chr2	154890163	154890363	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	2643.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	4.04	6.54	1.71	4.83	2.45	8.47	2.99	5.3	6.69	9.04	5.02	3.76
Merged-chr17-29510804-1	chr17	29510704	29510904	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	19759.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.25	5.28	3.99	4.02	3.68	0.63	2.66	4.21	8.85	6.03	0.0	3.76
Merged-chr5-88953231-1	chr5	88953131	88953331	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359211, intron 2 of 26)	intron (NM_001359211, intron 2 of 26)	65971.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	8.08	8.8	4.56	2.82	0.41	3.14	1.0	6.76	8.46	9.04	9.04	1.88
Merged-chr9-54614345-1	chr9	54614245	54614445	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053178, intron 11 of 13)	intron (NM_053178, intron 11 of 13)	27834.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	4.44	2.01	1.14	0.8	4.09	5.02	1.0	5.64	5.31	5.02	4.52	6.89
Merged-chr15-34587380-1	chr15	34587280	34587480	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145469, intron 6 of 10)	intron (NM_145469, intron 6 of 10)	-87693.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	0.0	0.0	1.14	0.0	0.0	0.0	0.0	0.0	4.13	13.56	12.56	3.76
Merged-chr3-107067476-1	chr3	107067376	107067576	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27972.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	8.88	3.52	12.55	4.83	3.27	11.92	1.99	6.45	11.21	17.57	12.06	5.01
Merged-chr15-31468070-1	chr15	31467970	31468170	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172606, intron 22 of 25)	MTB|LTR|ERVL-MaLR	-14381.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.25	7.29	3.42	3.22	11.05	7.21	3.99	2.47	12.19	9.04	4.52	3.45
Merged-chr10-95894922-1	chr10	95894822	95895022	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45741.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	6.46	1.51	4.56	3.22	4.09	3.76	5.98	5.47	6.69	7.53	12.56	4.39
Merged-chr19-61238169-1	chr19	61238069	61238269	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9751.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.85	3.02	1.14	3.62	0.0	1.25	5.65	5.61	1.97	2.51	0.0	1.88
Merged-chr18-64936220-1	chr18	64936120	64936320	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	48464.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	6.06	2.26	5.13	2.41	7.77	7.84	5.31	5.94	3.15	3.51	3.01	2.51
Merged-chr6-34610599-1	chr6	34610499	34610699	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	12095.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.65	1.51	0.57	1.61	3.27	1.25	7.31	4.63	1.97	5.52	8.54	3.45
Merged-chr3-90313568-1	chr3	90313468	90313668	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-28086.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	3.23	1.51	7.99	2.41	1.64	0.63	1.33	4.82	7.87	11.05	7.54	3.13
Merged-chr13-34084459-1	chr13	34084359	34084559	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_046184, exon 5 of 5)	non-coding (NR_046184, exon 5 of 5)	-6451.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	2.02	2.26	0.0	3.22	4.91	8.47	2.33	1.77	0.39	0.5	0.0	3.13
Merged-chr12-26469950-1	chr12	26469850	26470050	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_020557, exon 1 of 5)	exon (NM_020557, exon 1 of 5)	735.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	10.5	6.54	4.56	8.85	5.73	6.59	3.32	6.2	10.62	11.55	10.55	6.89
Merged-chr2-145786476-1	chr2	145786376	145786576	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	360.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.23	2.52	3.42	6.44	1.23	4.08	4.98	4.15	3.34	4.52	10.05	5.64
Merged-chr4-123083084-2	chr4	123082992	123083192	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22069.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	8.48	8.3	6.85	7.24	3.68	12.23	1.66	4.99	8.06	16.57	12.06	5.64
Merged-chr5-140829563-1	chr5	140829463	140829663	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	ID_B1|SINE|B4	868.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	1.21	0.75	5.13	3.22	6.95	2.51	5.98	3.17	3.34	2.51	1.0	1.88
Merged-chrX-99001439-1	chrX	99001339	99001539	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41142.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	2.83	0.5	2.85	4.02	0.82	6.27	4.65	5.72	1.97	7.53	2.51	1.88
Merged-chr7-28832388-2	chr7	28832295	28832495	+	633.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_016772)	TTS (NM_016772)	-1399.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	5.65	2.26	3.42	6.44	5.73	5.02	5.65	8.52	6.88	2.01	7.03	5.95
Merged-chr3-95883219-2	chr3	95883108	95883308	+	633.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-980.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	6.06	7.04	3.99	5.23	7.36	8.15	3.65	4.99	6.88	9.04	11.56	7.21
Merged-chr2-91187635-3	chr2	91187537	91187737	+	633.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355279, intron 7 of 9)	intron (NM_001355279, intron 7 of 9)	-4590.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	2.42	6.29	11.41	6.84	4.09	7.21	6.31	7.32	7.67	12.05	10.05	8.14
Merged-chr5-77252509-4	chr5	77252430	77252630	+	633.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-12964.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.65	3.02	3.42	4.02	1.64	2.2	5.65	1.71	5.51	2.01	1.51	2.82
Merged-chr11-62574419-2	chr11	62574332	62574532	+	633.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011706)	promoter-TSS (NM_011706)	-54.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	4.04	10.31	13.12	7.64	7.36	4.08	9.63	3.64	5.11	4.52	9.55	7.83
Merged-chr3-95670606-2	chr3	95670516	95670716	+	633.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	11895.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.06	10.82	2.85	8.85	2.05	6.59	1.99	0.95	8.06	6.03	3.52	2.51
Merged-chr9-15015770-2	chr9	15015692	15015892	+	633.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	29686.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	5.65	3.77	2.28	5.23	4.91	3.76	3.32	4.82	10.23	6.53	9.04	10.02
Merged-chr16-90197019-2	chr16	90196930	90197130	+	633.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23712.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	1.62	4.02	0.57	1.61	9.41	3.14	6.64	7.88	6.1	8.54	5.02	6.58
Merged-chr17-35865030-2	chr17	35864926	35865126	+	633.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146711)	promoter-TSS (NM_001146711)	-569.0	NM_001146711	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	10.5	3.77	1.14	2.01	6.95	9.72	14.62	5.72	8.85	4.02	10.05	3.45
Merged-chr10-117808310-3	chr10	117808175	117808375	+	633.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15570.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.42	5.79	1.71	4.83	5.73	3.14	3.65	7.01	9.05	7.03	8.54	7.21
Merged-chr3-62496057-3	chr3	62495958	62496158	+	633.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028136, intron 5 of 24)	intron (NM_028136, intron 5 of 24)	10930.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	8.08	5.53	4.56	11.26	8.59	4.39	4.65	8.75	14.95	12.05	16.58	7.52
Merged-chr12-112627648-1	chr12	112627548	112627748	+	633.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7601.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.46	3.77	3.42	1.61	9.41	5.96	4.98	6.45	5.11	4.02	3.52	5.01
Merged-chr2-132230004-3	chr2	132229913	132230113	+	633.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17775.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	2.42	3.27	4.56	7.64	2.86	2.2	6.98	3.9	7.08	4.52	1.51	3.45
Merged-chr9-60744824-1	chr9	60744724	60744924	+	633.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31703.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	4.85	5.79	6.28	5.63	3.68	8.78	4.98	6.2	8.26	3.51	5.02	2.82
Merged-chr4-84977059-2	chr4	84976954	84977154	+	633.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	92745.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	11.31	7.04	9.13	7.64	6.55	7.21	4.98	11.83	9.44	6.53	16.58	3.45
Merged-chr5-123372347-2	chr5	123372255	123372455	+	633.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-22443.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	9.29	5.28	2.28	10.86	3.27	5.02	6.31	3.2	7.28	9.04	3.52	10.65
Merged-chr7-44589347-3	chr7	44589242	44589442	+	633.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1544.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	2.83	6.54	7.99	6.03	6.95	8.78	5.65	7.21	8.26	12.05	4.52	5.95
Merged-chr2-180172331-1	chr2	180172231	180172431	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019822, intron 2 of 9)	intron (NM_019822, intron 2 of 9)	743.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	2.02	6.04	5.13	0.8	3.27	5.96	8.64	4.65	7.87	5.02	10.05	7.21
Merged-chr1-173730141-2	chr1	173730056	173730256	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001204910, exon 5 of 8)	exon (NM_001204910, exon 5 of 8)	11653.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.27	3.77	1.71	0.8	2.45	10.35	0.0	0.93	1.57	1.51	1.51	0.31
Merged-chr1-177487986-1	chr1	177487886	177488086	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42165.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.81	4.02	6.28	5.63	4.09	7.84	6.31	4.82	4.33	3.51	9.55	1.88
Merged-chr4-129003942-1	chr4	129003842	129004042	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016895, intron 4 of 6)	intron (NM_016895, intron 4 of 6)	10718.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	4.85	7.04	6.85	7.24	3.27	14.42	9.63	4.85	10.03	0.5	7.03	5.01
Merged-chr11-22784706-1	chr11	22784606	22784806	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75029.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.85	6.29	6.28	3.62	4.5	6.59	9.97	5.38	3.93	2.01	1.51	3.76
Merged-chr18-75906135-1	chr18	75906035	75906235	+	633.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	85957.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.4	0.5	0.0	0.0	0.82	0.63	0.66	0.53	8.26	12.05	13.06	5.01
Merged-chr3-28038338-1	chr3	28038238	28038438	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 6 of 25)	RLTR26C_MM|LTR|ERVK	54167.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.02	1.76	4.56	2.41	6.95	1.25	3.32	4.82	4.13	3.01	2.01	1.88
Merged-chr1-183442293-1	chr1	183442193	183442393	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23045.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	3.23	2.26	2.28	0.0	3.27	4.39	3.32	6.28	2.75	4.02	3.52	1.57
Merged-chr7-81199298-1	chr7	81199198	81199398	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-14506.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.04	1.51	1.14	1.21	9.0	7.21	5.98	6.48	3.15	7.03	8.04	0.63
Merged-chr15-38388464-2	chr15	38388359	38388559	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A1|LTR|ERVK	-87748.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	2.83	3.27	4.56	4.42	4.91	11.6	2.99	6.42	6.29	8.03	11.05	8.46
Merged-chr1-152800781-1	chr1	152800681	152800881	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	628.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	3.23	7.29	6.28	4.83	7.36	11.92	5.31	4.43	5.11	4.02	7.03	5.01
Merged-chr2-145804138-2	chr2	145804036	145804236	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	18020.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	12.52	4.02	7.99	9.65	8.59	5.64	6.31	6.34	4.92	12.55	12.56	7.52
Merged-chr19-5965447-1	chr19	5965347	5965547	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1241.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.46	4.78	2.28	3.22	5.73	6.27	3.65	5.21	7.28	13.56	6.53	4.39
Merged-chr6-108751507-1	chr6	108751407	108751607	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31552.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	2.42	2.52	9.13	3.22	4.09	6.59	5.65	5.72	8.46	2.01	12.56	5.95
Merged-chr6-134156315-3	chr6	134156245	134156445	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	120645.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.48	6.79	6.85	5.63	5.32	7.84	1.66	6.81	7.08	6.03	5.53	2.82
Merged-chr1-184825340-2	chr1	184825236	184825436	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2848.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	8.08	4.28	1.71	2.41	14.73	11.92	1.99	5.24	12.78	15.57	4.52	7.52
Merged-chr1-137899554-2	chr1	137899498	137899698	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66857.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	2.02	5.79	2.28	10.46	3.27	2.51	5.31	6.22	7.28	7.53	4.52	2.51
Merged-chr10-56690861-1	chr10	56690761	56690961	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	258880.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	2.83	2.01	1.14	0.8	0.82	1.57	1.99	4.04	2.75	1.51	3.52	3.13
Merged-chr3-105775853-2	chr3	105775744	105775944	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	25537.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	6.46	6.29	9.7	1.61	5.73	18.81	8.3	0.0	9.83	6.53	7.03	9.08
Merged-chr8-70808390-2	chr8	70808288	70808488	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008353)	promoter-TSS (NM_008353)	-61.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	4.85	9.81	7.42	4.02	3.27	2.2	0.66	4.51	11.21	8.03	6.03	4.39
Merged-chr17-88344340-1	chr17	88344240	88344440	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96364.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.85	1.26	8.56	1.61	7.36	4.39	2.66	6.87	0.0	0.0	1.51	3.13
Merged-chr7-126144018-2	chr7	126143918	126144118	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	56483.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	3.23	3.77	2.28	6.03	4.91	8.47	0.66	4.23	11.8	4.52	5.53	8.14
Merged-chr2-131056405-2	chr2	131056338	131056538	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033615, intron 5 of 20)	intron (NM_033615, intron 5 of 20)	7376.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	9.29	2.52	7.42	8.85	1.23	1.25	0.33	0.95	10.03	12.55	6.03	7.83
Merged-chr4-123545813-1	chr4	123545713	123545913	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-70607.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	4.04	4.78	5.7	7.24	4.09	6.27	5.31	6.36	3.15	4.52	1.0	3.45
Merged-chr7-126794335-1	chr7	126794235	126794435	+	633.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177308)	TTS (NM_001177308)	-1788.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	6.86	7.55	14.26	8.04	2.86	4.7	1.66	3.67	10.82	8.03	10.05	8.14
Merged-chr11-79089841-2	chr11	79089716	79089916	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	IMPB_01|Satellite|Satellite	-29980.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.65	7.04	3.99	1.61	3.27	3.76	3.65	4.93	6.1	11.55	3.52	1.57
Merged-chr2-105428139-1	chr2	105428039	105428239	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28820.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	2.83	1.51	0.0	1.61	5.73	10.35	4.65	6.11	4.13	1.0	9.04	3.13
Merged-chr8-83260595-3	chr8	83260505	83260705	+	633.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 15 of 20)	intron (NM_001111304, intron 15 of 20)	-29743.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	4.85	4.53	8.56	8.04	6.14	7.84	4.32	7.46	10.23	11.55	13.06	8.14
Merged-chr11-24049452-3	chr11	24049352	24049552	+	633.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28604.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	4.85	7.55	2.85	9.25	2.45	6.9	8.3	7.4	5.31	20.08	6.03	8.46
Merged-chr7-67226395-3	chr7	67226328	67226528	+	633.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175215, exon 3 of 3)	exon (NM_175215, exon 3 of 3)	3812.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	4.44	4.53	4.56	7.24	1.23	5.33	6.98	3.98	9.05	5.02	5.53	4.39
Merged-chr8-72491798-3	chr8	72491694	72491894	+	633.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177766, intron 2 of 5)	intron (NM_177766, intron 2 of 5)	820.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	13.73	5.03	5.13	8.85	6.55	10.35	6.31	4.43	12.19	11.05	8.04	5.64
Merged-chr10-123264049-3	chr10	123263956	123264156	+	633.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182807)	promoter-TSS (NM_182807)	-20.0	NR_153334	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	8.08	7.29	4.56	10.86	6.14	6.9	9.63	7.68	5.51	9.04	7.54	5.01
Merged-chr13-37777522-2	chr13	37777421	37777621	+	633.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48517.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.23	5.03	1.71	0.8	8.18	8.15	8.3	6.22	9.83	3.51	10.55	5.01
Merged-chr5-101938339-2	chr5	101938248	101938448	+	633.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 13 of 66)	B3|SINE|B2	131573.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.23	5.53	7.99	4.02	5.73	12.86	4.98	3.7	8.85	9.54	9.04	8.77
Merged-chr2-145391801-2	chr2	145391690	145391890	+	633.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	149179.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	10.5	5.53	10.27	8.85	5.73	5.02	4.65	9.48	4.13	1.51	8.04	8.14
Merged-chr7-101863635-1	chr7	101863535	101863735	+	633.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252552, intron 4 of 6)	intron (NM_001252552, intron 4 of 6)	-6445.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	7.67	5.53	6.85	2.41	5.32	7.53	7.31	6.7	5.11	8.03	7.03	6.27
Merged-chr17-10232620-1	chr17	10232520	10232720	+	633.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	86741.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	6.86	5.03	5.7	5.23	4.5	6.27	2.66	2.13	12.19	9.54	13.57	4.07
Merged-chr16-77049481-3	chr16	77049393	77049593	+	633.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 4 of 23)	intron (NM_013918, intron 4 of 23)	35424.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.65	8.8	2.85	10.86	2.86	4.08	4.98	13.91	9.24	3.51	10.55	5.01
Merged-chr3-54680287-1	chr3	54680187	54680387	+	633.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12528.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	7.67	4.02	2.85	4.02	6.55	5.64	8.3	5.5	4.92	8.54	7.54	6.58
Merged-chr16-43432224-1	chr16	43432124	43432324	+	633.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-12028.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	1.21	3.52	5.13	13.27	9.0	7.84	6.64	7.04	5.9	4.02	10.05	3.13
Merged-chr4-133005441-3	chr4	133005333	133005533	+	633.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6073.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	10.09	5.79	13.12	12.07	10.64	10.03	3.65	5.38	12.78	25.61	16.58	11.9
Merged-chr5-99284524-2	chr5	99284426	99284626	+	633.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31599.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.42	3.02	5.13	4.02	4.5	9.41	3.65	5.47	3.93	8.03	12.56	9.71
Merged-chr2-124614683-1	chr2	124614583	124614783	+	633.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	4387.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.44	3.02	10.84	7.24	9.0	6.9	6.64	4.46	5.7	2.01	5.53	4.39
Merged-chr15-99583757-2	chr15	99583603	99583803	+	633.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009699, intron 3 of 3)	intron (NM_009699, intron 3 of 3)	4647.0	NM_009699	11827.0	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	5.25	3.52	0.57	2.41	0.82	5.64	2.66	4.71	2.36	3.01	5.02	2.82
Merged-chr2-29640737-3	chr2	29640598	29640798	+	633.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	20978.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	10.5	7.29	6.85	10.05	6.55	6.27	1.0	4.96	4.92	7.03	5.02	6.58
Merged-chr16-91549276-2	chr16	91549164	91549364	+	633.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	IMPB_01|Satellite|Satellite	2170.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	4.85	8.05	10.27	3.62	4.09	3.45	2.66	2.19	9.44	10.54	10.55	7.83
Merged-chr3-106556046-2	chr3	106555954	106556154	+	633.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	ORR1G|LTR|ERVL-MaLR	-8252.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	2.42	6.29	6.85	6.44	7.36	8.78	5.31	6.9	10.82	12.05	4.02	4.39
Merged-chr18-84294255-2	chr18	84294130	84294330	+	633.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	206072.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	3.63	6.29	2.28	2.41	6.14	7.21	4.65	4.96	7.87	10.04	8.04	2.82
Merged-chr1-167415038-2	chr1	167414942	167415142	+	633.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21245.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	10.09	6.04	6.28	3.62	8.59	11.92	4.65	4.32	12.19	12.05	9.04	6.89
Merged-chr1-167269492-2	chr1	167269386	167269586	+	633.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	15641.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	8.48	3.02	3.99	3.22	9.0	5.96	5.98	9.56	4.52	4.52	6.53	7.21
Merged-chr16-32499896-2	chr16	32499819	32500019	+	633.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199309, intron 6 of 8)	intron (NM_199309, intron 6 of 8)	3638.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	6.86	4.02	2.85	7.24	4.91	6.27	2.66	3.25	6.29	10.04	5.02	7.21
Merged-chr17-75536813-1	chr17	75536713	75536913	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_133747)	TTS (NM_133747)	15133.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	5.25	1.51	0.0	9.65	6.14	5.64	1.33	6.39	7.08	1.51	1.51	3.76
Merged-chr12-35894530-1	chr12	35894430	35894630	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31091.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	1.01	1.14	3.22	1.64	0.0	0.0	0.36	7.87	5.02	12.56	8.14
Merged-chr9-65193366-1	chr9	65193266	65193466	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21324.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.81	2.77	1.14	2.41	6.95	8.47	6.64	5.89	3.54	1.0	9.04	5.33
Merged-chr11-59811581-1	chr11	59811481	59811681	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045686, intron 1 of 1)	intron (NR_045686, intron 1 of 1)	1501.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	3.23	0.5	1.14	0.0	3.27	2.82	5.65	4.68	2.56	2.01	3.01	2.82
Merged-chr7-98691038-1	chr7	98690938	98691138	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	11890.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	2.42	0.25	1.14	2.41	1.64	4.39	0.66	0.64	10.23	11.55	12.56	7.21
Merged-chr9-47653535-1	chr9	47653435	47653635	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	123183.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.85	0.75	5.7	1.61	6.95	10.35	5.31	4.29	1.38	0.5	0.0	0.0
Merged-chr2-51072694-1	chr2	51072594	51072794	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76417.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	5.65	6.79	5.7	5.63	4.09	6.9	1.99	5.69	4.92	0.0	8.54	2.19
Merged-chr1-66863913-1	chr1	66863813	66864013	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-604.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	2.02	3.02	1.14	0.8	2.86	4.08	2.33	4.15	12.78	5.52	2.51	6.27
Merged-chr8-11450842-1	chr8	11450742	11450942	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27087.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.85	6.29	5.7	1.61	5.73	5.02	4.32	7.77	13.57	2.51	7.54	4.39
Merged-chr10-78279338-1	chr10	78279238	78279438	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 7 of 9)	intron (NM_053014, intron 7 of 9)	-34696.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	4.44	2.77	1.71	5.63	2.05	4.7	2.66	0.76	3.34	3.51	4.52	6.89
Merged-chr8-84363935-1	chr8	84363835	84364035	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51429.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.85	2.26	3.42	7.64	4.09	5.33	2.66	6.39	2.95	2.01	1.51	3.76
Merged-chr9-103996719-2	chr9	103996619	103996819	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5825.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	8.08	8.3	11.41	2.82	5.73	8.47	4.65	6.0	12.98	8.54	14.57	10.65
Merged-chr16-55805232-1	chr16	55805132	55805332	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	16906.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.27	5.28	0.0	0.0	1.23	1.88	0.0	0.93	0.79	3.01	0.5	0.0
Merged-chr2-102057575-1	chr2	102057475	102057675	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	128885.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	1.21	0.0	0.57	0.8	6.95	5.02	6.64	8.92	0.39	0.5	0.5	0.63
Merged-chr2-126073415-1	chr2	126073315	126073515	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	38757.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	3.23	2.52	9.7	5.63	9.82	4.39	5.31	5.21	4.33	2.01	1.51	4.39
Merged-chr5-110434914-1	chr5	110434814	110435014	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	13589.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.46	5.53	5.7	4.83	5.32	3.14	3.99	6.45	6.29	8.54	12.56	4.39
Merged-chr11-54486269-1	chr11	54486169	54486369	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-36576.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	2.83	0.5	0.0	0.8	9.0	6.59	1.99	5.07	3.15	2.01	5.02	1.57
Merged-chr14-13960190-1	chr14	13960090	13960290	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359900, intron 1 of 8)	RSINE1|SINE|B4	1123.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	8.08	3.27	4.56	0.0	5.32	4.08	5.98	3.7	5.9	3.01	3.52	5.95
Merged-chr1-21068654-1	chr1	21068554	21068754	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	10571.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	8.48	1.26	0.0	8.85	5.73	3.45	7.31	3.31	9.24	2.51	7.03	7.21
Merged-chr14-102784863-1	chr14	102784763	102784963	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	197769.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	6.46	8.05	4.56	4.83	5.73	5.64	3.65	8.61	8.06	5.02	9.04	1.57
Merged-chr9-51990982-1	chr9	51990882	51991082	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-27380.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	6.46	9.81	3.99	8.85	5.32	4.08	3.65	9.98	6.1	7.03	7.03	2.82
Merged-chr13-28513225-1	chr13	28513125	28513325	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	197648.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	2.42	4.53	5.7	1.61	4.09	5.33	1.99	6.81	0.79	1.51	1.51	1.57
Merged-chr14-17912899-2	chr14	17912796	17912996	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-68748.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.42	9.31	9.13	7.64	4.09	1.88	6.31	10.21	10.03	7.03	6.53	3.13
Merged-chr5-32721607-1	chr5	32721507	32721707	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24735.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.81	5.79	7.42	7.24	5.73	4.39	8.64	9.59	2.16	1.51	0.0	0.0
Merged-chr15-103476879-1	chr15	103476779	103476979	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 18 of 30)	intron (NM_153505, intron 18 of 30)	23054.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	4.04	3.77	11.41	5.63	4.91	1.57	1.33	3.67	6.29	3.51	8.54	9.08
Merged-chr16-76220589-2	chr16	76220492	76220692	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR90A|LTR|LTR	97979.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	3.23	6.29	9.13	3.22	1.64	8.15	4.65	7.29	9.05	4.52	5.53	4.07
Merged-chr11-85823393-1	chr11	85823293	85823493	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	8995.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	6.86	4.02	7.42	3.62	7.77	4.7	4.98	4.85	5.11	4.52	14.07	5.64
Merged-chr8-117502373-1	chr8	117502273	117502473	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	4098.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	1.62	1.51	2.28	2.41	7.36	1.25	0.33	6.53	3.93	3.51	6.53	3.45
Merged-chr1-173634451-2	chr1	173634348	173634548	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175026, intron 1 of 6)	intron (NM_175026, intron 1 of 6)	3589.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	6.06	2.52	7.42	2.41	6.95	5.02	1.99	4.12	10.62	10.04	7.03	4.39
Merged-chr6-83162949-1	chr6	83162849	83163049	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027948)	TTS (NM_027948)	-2975.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.81	3.02	5.13	2.01	4.91	2.2	2.33	6.08	7.67	4.02	2.51	2.51
Merged-chr5-57478072-2	chr5	57477980	57478180	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	239839.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	4.85	7.04	4.56	10.86	6.55	1.88	5.31	7.99	0.79	0.5	5.53	2.19
Merged-chr2-163788683-1	chr2	163788583	163788783	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32151.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	4.04	2.52	3.42	0.8	4.91	9.09	4.98	4.79	4.72	0.0	5.02	2.19
Merged-chr6-72440531-1	chr6	72440431	72440631	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	-973.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	7.27	5.28	8.56	2.82	9.0	2.2	4.32	7.29	7.87	0.0	3.52	4.39
Merged-chr8-126909584-1	chr8	126909484	126909684	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36337.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	1.21	1.76	2.28	0.8	1.23	6.59	1.0	5.52	3.15	3.01	0.0	1.88
Merged-chr1-172046536-2	chr1	172046434	172046634	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11062.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	5.25	7.8	22.82	5.63	11.45	8.15	7.64	7.21	1.97	6.53	2.51	1.57
Merged-chr13-76099129-1	chr13	76099029	76099229	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	395.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	3.63	3.02	1.71	3.62	8.18	9.72	4.98	7.26	5.51	3.51	7.03	4.07
Merged-chr5-25007065-1	chr5	25006965	25007165	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-11312.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.42	9.06	3.42	3.22	5.73	1.88	4.65	5.13	2.75	5.02	6.03	6.58
Merged-chr3-135683479-2	chr3	135683377	135683577	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	8070.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	10.5	2.26	10.84	2.01	5.73	4.7	3.32	5.86	8.46	9.04	7.54	8.77
Merged-chr8-36826352-1	chr8	36826252	36826452	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	MTD|LTR|ERVL-MaLR	-93298.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.44	0.5	3.42	5.23	2.45	2.2	6.64	2.64	0.59	0.5	5.53	0.31
Merged-chr13-47211392-1	chr13	47211292	47211492	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	17389.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	10.5	7.29	6.85	2.41	4.09	8.78	6.64	2.66	3.15	8.54	9.04	3.13
Merged-chr3-89795781-1	chr3	89795681	89795881	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22172.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	4.04	2.01	3.42	3.62	6.95	6.59	2.99	5.72	3.15	11.05	6.03	8.14
Merged-chr10-93078628-2	chr10	93078480	93078680	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	3016.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	7.27	4.28	1.71	0.8	4.91	4.39	5.65	2.72	7.08	3.51	7.03	8.46
Merged-chr17-28283415-1	chr17	28283315	28283515	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-9793.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	3.63	0.5	10.84	3.22	4.5	5.33	3.99	8.5	10.62	7.03	9.55	4.39
Merged-chr14-66175878-2	chr14	66175790	66175990	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 10 of 30)	intron (NM_001162366, intron 10 of 30)	34930.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	4.85	4.28	8.56	3.62	9.0	6.59	3.99	5.16	9.64	4.52	5.53	9.4
Merged-chr12-40431721-1	chr12	40431621	40431821	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172575, intron 1 of 12)	RMER6B|LTR|ERVK	14069.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	5.25	5.28	10.27	1.61	2.05	5.64	3.99	7.82	3.34	5.02	8.04	3.45
Merged-chr14-75761258-2	chr14	75761143	75761343	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026232)	TTS (NM_026232)	-6750.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	7.27	4.53	5.7	2.41	1.64	6.59	2.66	3.53	8.06	10.04	7.54	7.52
Merged-chr8-34156496-1	chr8	34156396	34156596	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	1933.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.0	2.01	3.42	4.02	1.23	5.33	1.33	6.79	5.11	3.51	0.5	1.88
Merged-chr5-140963060-1	chr5	140962960	140963160	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	37536.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.25	3.52	7.99	2.01	2.86	6.59	1.0	2.5	2.56	1.51	1.0	3.45
Merged-chrX-153694980-1	chrX	153694880	153695080	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175429, intron 2 of 2)	intron (NM_175429, intron 2 of 2)	1300.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	0.81	1.51	0.57	2.01	0.82	1.25	5.65	4.15	2.16	0.5	1.51	3.76
Merged-chr17-48331051-1	chr17	48330951	48331151	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14889.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	2.52	10.27	0.8	8.18	4.39	3.65	5.44	2.36	6.03	3.01	2.19
Merged-chr3-19305565-1	chr3	19305465	19305665	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	5757.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	5.65	8.05	3.99	3.62	6.14	2.51	4.65	6.98	13.57	7.03	4.02	3.76
Merged-chr1-152580628-1	chr1	152580528	152580728	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	ORR1F|LTR|ERVL-MaLR	44589.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.67	5.53	3.42	4.02	8.18	7.21	3.65	4.04	7.87	7.03	6.03	2.82
Merged-chr14-30609495-2	chr14	30609410	30609610	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 2 of 17)	intron (NM_011103, intron 2 of 17)	800.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.25	1.51	8.56	4.83	11.45	8.78	3.32	5.41	6.69	14.56	11.56	6.27
Merged-chr10-84533586-1	chr10	84533486	84533686	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175451, exon 1 of 2)	exon (NM_175451, exon 1 of 2)	302.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	4.44	3.27	10.27	7.24	5.73	5.64	1.0	7.35	5.9	5.52	7.54	4.39
Merged-chr5-142932049-1	chr5	142931949	142932149	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25295.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.25	7.55	5.13	3.62	9.0	2.51	1.99	3.45	8.85	9.04	5.53	7.83
Merged-chr10-84341604-1	chr10	84341504	84341704	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	98867.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.25	0.25	0.0	0.8	5.73	0.63	4.98	5.07	3.34	0.0	2.51	2.19
Merged-chr6-43542049-1	chr6	43541949	43542149	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	99620.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	6.46	4.53	1.71	5.63	4.09	6.27	4.65	6.28	5.31	9.54	2.01	3.13
Merged-chr9-90266302-1	chr9	90266202	90266402	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4467.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.62	1.76	0.0	2.41	3.68	4.7	6.98	3.62	6.1	2.01	8.54	4.07
Merged-chr17-43550199-3	chr17	43550089	43550289	+	632.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-6550.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	6.46	11.32	10.27	8.04	12.27	13.8	9.3	8.21	7.47	6.03	11.05	7.52
Merged-chr13-81439536-2	chr13	81439445	81439645	+	632.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_054053, exon 67 of 90)	exon (NM_054053, exon 67 of 90)	193599.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	2.83	4.02	4.56	2.41	4.09	8.15	1.33	5.02	8.65	9.04	11.05	9.4
Merged-chr1-151353142-2	chr1	151353051	151353251	+	632.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039511, intron 5 of 7)	B2_Mm2|SINE|B2	8653.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	6.46	11.32	14.83	6.84	9.0	8.47	4.65	6.53	7.87	8.54	8.54	5.01
Merged-chr17-24015859-2	chr17	24015733	24015933	+	632.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17733.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	2.42	2.26	1.71	1.61	6.55	6.59	4.98	2.94	6.29	10.54	8.04	3.45
Merged-chr12-70233767-3	chr12	70233604	70233804	+	632.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045174, intron 4 of 4)	intron (NR_045174, intron 4 of 4)	5863.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	2.42	3.02	3.99	2.01	5.32	3.14	2.99	2.24	7.28	5.52	6.53	10.02
Merged-chr16-94504374-3	chr16	94504281	94504481	+	632.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	22248.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	9.29	5.03	13.69	10.46	11.45	7.21	6.98	23.66	8.85	16.07	4.52	6.89
Merged-chr1-37002281-3	chr1	37002198	37002398	+	632.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-62771.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.46	9.31	9.7	2.01	5.32	9.09	3.65	4.57	8.26	3.01	5.53	4.39
Merged-chr10-80548908-2	chr10	80548818	80549018	+	632.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025852, intron 2 of 14)	intron (NM_025852, intron 2 of 14)	-9794.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	8.88	7.29	9.7	0.4	5.32	5.96	3.32	6.81	6.88	7.53	7.03	10.96
Merged-chr4-116991571-3	chr4	116991479	116991679	+	632.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009478, intron 7 of 9)	intron (NM_009478, intron 7 of 9)	2834.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	9.69	7.29	4.56	2.41	5.32	7.84	3.99	5.1	6.69	3.51	8.04	8.77
Merged-chr11-60697687-1	chr11	60697587	60697787	+	632.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2003.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	4.85	5.79	5.7	8.85	10.64	8.15	3.32	4.09	9.83	10.54	3.01	9.4
Merged-chr3-148987011-1	chr3	148986911	148987111	+	632.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32376.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.4	3.77	12.55	2.82	4.91	4.7	5.98	5.64	3.54	4.02	4.02	0.94
Merged-chr12-18514394-1	chr12	18514294	18514494	+	632.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033157)	promoter-TSS (NM_001033157)	-116.0	NM_001033157	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	1.62	0.0	1.14	0.8	2.86	0.31	1.33	1.99	10.42	13.05	11.56	2.51
Merged-chr15-30611331-2	chr15	30611282	30611482	+	632.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427744.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	6.86	5.03	5.13	7.24	4.91	6.59	3.65	6.2	5.9	7.53	16.58	4.07
Merged-chr3-89308298-2	chr3	89308187	89308387	+	632.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14592.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	18.17	4.02	10.27	10.46	4.91	15.05	1.99	8.44	8.85	11.05	12.56	10.02
Merged-chr1-189080994-1	chr1	189080894	189081094	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-73154.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	2.42	3.27	4.56	1.21	2.45	4.7	6.64	6.42	0.39	3.51	1.51	1.57
Merged-chr11-54520462-2	chr11	54520387	54520587	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	1.21	4.02	6.85	4.02	2.45	5.64	6.31	6.0	5.31	9.04	11.56	4.7
Merged-chr14-65105207-1	chr14	65105107	65105307	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7101.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.04	3.77	7.99	4.83	7.36	5.33	2.33	5.24	1.77	4.02	6.03	3.76
Merged-chr4-141407079-1	chr4	141406979	141407179	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019701, intron 16 of 19)	intron (NM_019701, intron 16 of 19)	-8373.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	6.06	6.29	6.85	4.02	9.0	10.35	3.32	5.5	8.85	4.02	8.54	8.14
Merged-chr17-56939363-1	chr17	56939263	56939463	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-3975.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	8.08	4.78	7.42	7.24	6.55	4.39	9.63	4.91	6.49	3.51	6.03	7.52
Merged-chr17-28329473-2	chr17	28329364	28329564	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011287, exon 4 of 6)	exon (NM_011287, exon 4 of 6)	899.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	8.48	3.52	9.13	2.01	10.23	7.53	6.31	1.57	6.29	10.04	5.53	7.83
Merged-chr8-40023634-2	chr8	40023539	40023739	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	263314.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	8.08	4.53	2.28	7.24	6.55	5.64	5.31	5.36	6.69	4.02	15.07	9.4
Merged-chr8-108608967-1	chr8	108608867	108609067	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24290.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	1.62	1.26	5.7	4.02	0.82	5.02	10.63	4.15	0.79	2.01	0.0	0.0
Merged-chrX-18284754-1	chrX	18284654	18284854	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122179.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	5.25	2.01	5.7	3.22	6.14	7.53	2.66	8.13	5.51	2.51	13.06	3.45
Merged-chr9-96143832-2	chr9	96143735	96143935	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177352, intron 5 of 16)	intron (NM_177352, intron 5 of 16)	24406.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.81	7.29	5.7	3.62	0.82	6.27	2.66	6.7	7.28	9.54	11.05	6.27
Merged-chr1-181022419-1	chr1	181022319	181022519	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4850.0	NM_010145	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	6.86	2.52	3.99	3.62	7.77	7.21	1.33	5.44	5.7	3.01	8.04	1.25
Merged-chr13-23578101-2	chr13	23577983	23578183	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2320.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	8.88	6.54	3.42	6.84	8.18	10.66	1.99	1.4	1.18	6.03	3.52	5.01
Merged-chr12-16882657-1	chr12	16882557	16882757	+	632.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12321.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	1.62	2.01	10.27	4.42	6.55	8.47	2.33	3.5	10.23	8.54	8.54	7.83
Merged-chr8-77425911-2	chr8	77425808	77426008	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	(T)n|Simple_repeat|Simple_repeat	-91148.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.23	9.31	6.85	13.27	4.91	6.9	1.0	5.21	3.15	16.57	6.03	5.95
Merged-chr8-106443760-2	chr8	106443653	106443853	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28414.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	13.73	7.29	6.28	2.82	8.59	10.03	4.32	6.34	2.36	2.51	6.53	2.51
Merged-chr6-28623170-2	chr6	28623073	28623273	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142825.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.81	6.04	6.85	10.05	6.55	8.78	4.65	8.52	9.24	8.54	14.07	7.52
Merged-chr9-61682548-1	chr9	61682448	61682648	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	231962.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	4.85	2.01	2.28	2.01	5.32	5.96	1.33	7.88	4.92	3.01	3.52	4.39
Merged-chr11-100321843-2	chr11	100321754	100321954	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011508, exon 4 of 4)	3' UTR (NM_011508, exon 4 of 4)	1905.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	6.46	6.29	9.7	7.24	7.77	5.02	9.3	4.43	9.44	9.54	4.02	6.27
Merged-chr19-6281632-3	chr19	6281488	6281688	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	4692.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	2.83	3.27	5.13	3.22	0.82	5.96	2.66	0.0	4.92	10.04	3.52	0.0
Merged-chr6-84750622-1	chr6	84750522	84750722	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156714.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.06	5.03	7.99	4.83	1.64	5.96	4.32	4.99	5.11	1.0	8.04	2.19
Merged-chr11-49210722-1	chr11	49210622	49210822	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	7222.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	2.42	5.53	1.14	1.21	6.14	6.27	2.99	3.84	6.69	9.04	4.02	2.82
Merged-chr15-27927046-1	chr15	27926946	27927146	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98802.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	2.02	9.31	1.14	5.23	7.36	4.08	6.31	5.16	7.08	2.01	2.51	2.82
Merged-chr8-122618113-3	chr8	122617981	122618181	+	632.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4294.0	NR_105821	102466643.0		NR_105821	ENSMUSG00000098500	Mir6396	Gm27938|mmu-mir-6396	microRNA 6396	ncRNA	8.08	7.55	8.56	8.04	6.95	17.25	5.98	6.25	10.42	4.02	15.58	4.07
Merged-chr4-133570264-2	chr4	133570153	133570353	+	632.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER92B|LTR|ERV1	-4492.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	6.46	11.57	3.42	6.84	9.82	9.72	7.31	4.07	1.57	2.01	2.01	2.51
Merged-chr3-89474033-2	chr3	89473944	89474144	+	632.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	14473.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	4.85	2.52	3.42	10.86	8.18	11.6	4.98	8.55	7.28	2.01	9.55	5.01
Merged-chr15-75089349-2	chr15	75089252	75089452	+	632.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22585.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	12.11	10.06	17.11	2.82	4.09	8.47	3.99	7.12	5.51	1.51	5.02	5.64
Merged-chr19-43673756-3	chr19	43673631	43673831	+	632.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	1150.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	9.29	5.28	6.85	7.64	4.91	2.82	4.98	6.9	10.42	4.52	6.03	7.21
Merged-chr4-47319024-1	chr4	47318924	47319124	+	632.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-34198.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	2.42	5.79	3.42	6.03	4.5	7.84	5.31	5.13	9.83	5.02	4.02	2.51
Merged-chr15-77905452-3	chr15	77905365	77905565	+	632.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23529.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	7.27	4.78	13.12	0.4	4.91	6.9	1.99	5.78	7.08	11.55	16.08	2.82
Merged-chr18-60382632-2	chr18	60382533	60382733	+	632.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001146275, exon 2 of 3)	5' UTR (NM_001146275, exon 2 of 3)	6604.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	4.04	4.28	12.55	6.84	8.18	0.94	5.65	7.68	7.87	3.01	12.56	8.14
Merged-chr6-115887045-2	chr6	115886861	115887061	+	632.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031177, exon 9 of 29)	exon (NM_031177, exon 9 of 29)	33433.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	1.62	5.53	0.0	4.02	1.64	1.57	3.99	1.51	4.13	4.52	4.52	4.39
Merged-chr19-56811709-3	chr19	56811593	56811793	+	632.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170757, intron 1 of 14)	intron (NM_170757, intron 1 of 14)	1990.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	11.31	7.04	11.41	6.03	13.09	7.53	9.97	5.27	5.9	9.54	14.07	4.39
Merged-chr9-7878438-3	chr9	7878331	7878531	+	632.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5261.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	11.31	8.55	3.42	5.63	3.27	6.27	10.96	4.51	19.67	12.05	23.11	2.82
Merged-chr13-10540383-2	chr13	10540278	10540478	+	632.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-179575.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.57	0.4	8.18	11.6	2.66	5.44	6.88	8.03	7.03	8.46
Merged-chr3-131869501-2	chr3	131869410	131869610	+	632.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-215782.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.83	1.76	7.99	2.82	6.14	4.7	6.64	7.85	9.05	7.03	8.54	9.4
Merged-chr19-3924601-2	chr19	3924515	3924715	+	632.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	5101.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	2.42	1.01	10.27	4.02	6.55	8.47	7.31	5.52	10.42	1.0	10.05	9.08
Merged-chr9-62936085-1	chr9	62935985	62936185	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	44794.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	1.62	5.28	1.71	4.02	1.64	4.08	5.65	5.72	8.65	7.03	6.03	5.33
Merged-chr4-3085608-1	chr4	3085508	3085708	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86475.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	4.85	5.53	1.14	7.24	1.23	5.64	3.32	3.62	4.92	10.04	2.51	7.21
Merged-chr17-81510878-1	chr17	81510778	81510978	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	227509.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.4	1.51	0.0	0.0	5.73	1.57	5.65	4.96	3.34	1.51	3.01	0.0
Merged-chr18-80705354-1	chr18	80705254	80705454	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	2819.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	7.67	5.03	7.99	1.21	5.73	4.08	3.65	5.97	6.1	3.51	6.53	7.83
Merged-chr1-167551861-1	chr1	167551761	167551961	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46501.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.0	1.76	0.0	0.0	1.23	5.02	4.32	3.2	0.79	0.0	0.5	0.94
Merged-chr3-116170255-1	chr3	116170155	116170355	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-40567.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.46	5.03	3.42	2.01	3.27	3.45	5.98	4.88	5.31	4.02	5.53	1.88
Merged-chr4-32391470-1	chr4	32391370	32391570	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25965.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.62	1.26	2.28	0.0	3.68	2.82	7.31	4.68	0.39	2.01	1.0	1.57
Merged-chr3-60569601-1	chr3	60569501	60569701	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	68422.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.23	2.01	4.56	4.02	2.45	9.41	2.66	4.91	11.6	2.51	3.52	0.94
Merged-chr14-34778036-1	chr14	34777936	34778136	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42100.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	2.02	1.51	0.57	3.62	5.73	3.45	1.33	4.79	4.92	2.01	3.52	5.01
Merged-chr18-56832702-1	chr18	56832602	56832802	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	92846.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	4.04	3.77	13.69	10.86	2.45	0.94	1.99	0.93	2.56	0.0	1.51	1.88
Merged-chr11-23727701-2	chr11	23727612	23727812	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 16 of 17)	intron (NM_001033654, intron 16 of 17)	43258.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.46	8.8	6.28	5.63	4.91	2.51	4.32	8.61	5.7	9.54	12.06	4.39
Merged-chr18-23821703-1	chr18	23821603	23821803	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	17733.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.06	4.28	3.42	6.03	6.14	5.64	1.99	7.09	5.7	7.03	1.0	2.51
Merged-chr15-53785604-1	chr15	53785504	53785704	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	116832.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	2.42	1.76	1.14	3.62	2.86	5.64	0.66	5.19	6.49	2.51	1.51	7.52
Merged-chr4-140905505-1	chr4	140905405	140905605	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-855.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	5.25	4.78	1.14	1.61	3.68	5.64	2.99	2.72	4.72	2.01	3.01	6.58
Merged-chr12-103326767-1	chr12	103326667	103326867	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023049, intron 7 of 9)	MIR|SINE|MIR	11808.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	6.46	5.03	7.99	4.42	10.23	2.2	8.64	4.65	1.97	2.01	2.51	2.19
Merged-chr2-51509412-1	chr2	51509312	51509512	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-71512.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	1.62	1.51	4.56	8.04	6.95	1.57	1.33	4.93	2.56	2.51	2.51	0.0
Merged-chr15-62433778-1	chr15	62433678	62433878	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-214327.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	2.42	5.79	0.57	2.41	3.68	6.59	2.99	6.42	6.49	2.01	8.54	1.57
Merged-chr4-36186635-1	chr4	36186535	36186735	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-341431.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.81	0.25	0.0	1.61	1.23	0.63	1.99	5.64	2.56	7.53	4.52	4.07
Merged-chr11-100408245-1	chr11	100408145	100408345	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_176830)	TTS (NM_176830)	6574.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	6.06	9.06	7.99	4.83	4.09	3.76	1.33	1.91	6.49	17.57	13.06	4.7
Merged-chr17-81668647-1	chr17	81668547	81668747	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69740.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.63	3.27	2.28	10.05	0.41	3.45	8.3	2.86	10.23	6.03	10.55	0.94
Merged-chr6-123263364-3	chr6	123263277	123263477	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	1270.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	7.67	6.54	3.42	2.41	8.18	13.48	5.65	5.33	13.57	17.57	6.53	7.52
Merged-chr5-99386733-1	chr5	99386633	99386833	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-133806.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.46	1.26	5.13	2.01	4.91	4.39	4.32	4.65	5.51	5.52	6.53	5.01
Merged-chr11-16987541-1	chr11	16987441	16987641	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019549, exon 6 of 10)	exon (NM_019549, exon 6 of 10)	21177.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.67	4.28	2.85	1.61	8.59	6.9	5.31	5.19	4.92	5.02	4.52	5.95
Merged-chr12-86024557-1	chr12	86024457	86024657	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	54484.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	1.62	3.77	2.28	4.83	6.14	2.51	7.97	7.96	7.28	1.51	6.03	3.76
Merged-chr1-75209441-1	chr1	75209341	75209541	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029010, exon 2 of 17)	5' UTR (NM_029010, exon 2 of 17)	1337.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	3.63	4.28	1.14	1.61	8.18	12.86	4.32	3.56	11.6	6.53	7.54	1.88
Merged-chr11-118443428-2	chr11	118443335	118443535	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204130)	promoter-TSS (NM_001204130)	-99.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	4.85	2.52	3.42	2.41	9.41	7.53	1.0	5.1	9.05	9.54	7.03	6.27
Merged-chr11-16589514-1	chr11	16589414	16589614	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81030.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	4.85	2.52	0.0	2.82	2.45	0.63	3.99	5.72	1.38	4.02	6.03	0.94
Merged-chr2-101174823-1	chr2	101174723	101174923	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-449925.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	4.44	3.02	4.56	0.8	11.45	5.96	1.33	5.1	6.49	6.53	6.03	1.57
Merged-chr19-46315409-1	chr19	46315309	46315509	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9479.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	6.06	4.78	7.99	4.83	7.36	6.9	8.64	3.34	16.13	6.03	9.55	5.01
Merged-chr16-5447661-1	chr16	5447561	5447761	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191705.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	10.09	5.28	12.55	6.03	5.73	3.14	6.31	3.06	1.38	2.01	1.51	0.63
Merged-chr10-88680435-1	chr10	88680335	88680535	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011461, intron 2 of 5)	intron (NM_011461, intron 2 of 5)	2588.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	5.65	4.02	9.13	0.8	5.73	6.59	8.97	5.1	4.52	7.03	2.51	1.57
Merged-chr12-79193675-1	chr12	79193575	79193775	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MURVY-int|LTR|ERV1	-1820.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	8.08	3.27	6.85	3.62	7.36	2.82	8.64	4.43	5.51	2.51	3.01	2.51
Merged-chr4-55398364-1	chr4	55398264	55398464	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20478.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	2.02	0.5	1.71	1.21	2.05	0.63	0.66	0.2	14.55	6.53	7.54	5.64
Merged-chr15-62450011-1	chr15	62449911	62450111	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230560.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.04	4.02	4.56	3.22	6.55	1.25	1.99	2.78	8.46	3.01	10.05	5.33
Merged-chr11-69575398-1	chr11	69575298	69575498	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144824, intron 3 of 9)	B3|SINE|B2	3926.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	6.46	2.77	9.13	7.24	7.77	2.82	2.99	4.37	5.51	5.52	3.52	2.82
Merged-chr4-133197105-1	chr4	133197005	133197205	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	1450.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.42	0.0	4.56	5.23	2.45	6.27	3.65	7.04	3.15	3.51	3.01	3.13
Merged-chr1-185294400-1	chr1	185294300	185294500	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198653, intron 18 of 22)	RSINE1|SINE|B4	-18919.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.0	4.53	1.14	1.61	3.68	3.45	5.31	4.15	0.98	0.0	1.51	3.13
Merged-chr7-128019397-1	chr7	128019297	128019497	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	15019.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	1.62	3.27	3.42	0.0	7.36	1.88	3.65	5.44	3.15	4.52	6.53	5.64
Merged-chr17-46266099-1	chr17	46265999	46266199	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252475, intron 1 of 8)	intron (NM_001252475, intron 1 of 8)	11934.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	7.67	8.05	6.28	3.22	6.14	6.59	4.98	2.97	12.59	3.51	9.04	4.7
Merged-chr13-81104038-1	chr13	81103938	81104138	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 88 of 89)	intron (NM_054053, intron 88 of 89)	139964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.42	5.28	13.12	4.02	6.95	5.02	3.65	6.56	5.11	2.51	13.57	5.01
Merged-chr1-56795335-1	chr1	56795235	56795435	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_139146, exon 11 of 11)	3' UTR (NM_139146, exon 11 of 11)	-157884.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	1.62	4.78	0.0	3.22	10.23	2.82	3.32	5.27	0.79	2.51	6.53	1.25
Merged-chr2-26482932-1	chr2	26482832	26483032	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-12813.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	5.25	5.28	0.57	0.0	2.05	7.84	3.32	4.82	7.87	3.01	1.51	5.01
Merged-chr7-3303482-1	chr7	3303382	3303582	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011102)	promoter-TSS (NM_011102)	-50.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	4.85	5.03	1.14	3.62	4.5	2.82	5.31	3.87	12.0	12.55	3.01	11.28
Merged-chr13-75823943-1	chr13	75823843	75824043	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15942.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.83	1.76	3.42	5.63	3.27	7.84	1.0	5.5	3.74	0.5	3.01	2.51
Merged-chr4-72232384-1	chr4	72232284	72232484	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31140.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	2.28	0.8	7.77	2.82	5.31	11.92	0.39	0.0	1.51	1.88
Merged-chr17-46341841-1	chr17	46341741	46341941	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12E|LTR|ERVK	-13818.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	2.83	2.77	1.71	2.41	3.27	1.88	2.99	3.34	10.03	6.03	10.05	2.82
Merged-chr7-102313350-1	chr7	102313250	102313450	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	45526.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.0	3.02	1.14	4.83	4.09	5.96	2.99	3.93	3.15	12.55	14.57	7.21
Merged-chr7-100817365-1	chr7	100817265	100817465	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 4 of 8)	ID_B1|SINE|B4	46048.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.63	5.03	3.99	6.44	4.09	3.14	5.98	4.88	6.29	7.53	4.52	1.57
Merged-chr13-31808194-1	chr13	31808094	31808294	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008592, exon 1 of 1)	exon (NM_008592, exon 1 of 1)	1548.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	5.25	1.76	5.13	0.8	2.05	2.51	7.31	5.16	4.92	5.02	4.02	5.33
Merged-chr13-6469561-1	chr13	6469461	6469661	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78596.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	4.44	4.53	2.28	4.02	6.95	5.33	1.66	7.85	10.62	10.04	3.52	0.31
Merged-chr9-89974797-1	chr9	89974697	89974897	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011245, exon 9 of 27)	exon (NM_011245, exon 9 of 27)	65022.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	4.04	7.8	10.27	3.22	8.18	2.82	8.97	4.77	10.23	9.04	9.04	5.64
Merged-chr17-12742656-1	chr17	12742556	12742756	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027773, intron 1 of 2)	intron (NR_027773, intron 1 of 2)	1345.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.4	0.0	0.0	3.22	2.45	5.64	2.33	5.16	3.34	2.01	0.5	4.7
Merged-chr13-101851022-1	chr13	101850922	101851122	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82805.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.88	1.76	5.13	4.83	4.5	4.39	3.32	5.27	5.9	9.54	7.54	7.21
Merged-chr4-15268050-1	chr4	15267950	15268150	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	2230.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	1.62	2.01	0.0	1.61	5.73	1.88	1.99	0.79	0.79	1.0	2.51	0.31
Merged-chr14-103537550-1	chr14	103537450	103537650	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022886, intron 5 of 30)	intron (NM_022886, intron 5 of 30)	24209.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.83	3.27	9.7	4.02	5.32	3.76	2.66	5.07	6.29	1.51	3.01	1.57
Merged-chr11-103403524-1	chr11	103403424	103403624	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	9140.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.04	2.77	4.56	3.22	3.27	8.15	3.65	5.33	6.1	3.51	1.0	3.76
Merged-chr11-53868621-2	chr11	53868519	53868719	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011396, intron 7 of 9)	ID_B1|SINE|B4	-9363.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	3.23	7.55	4.56	4.83	7.36	13.8	6.31	0.53	12.39	5.02	9.55	4.39
Merged-chr18-82822457-1	chr18	82822357	82822557	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33440.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.02	6.29	6.85	4.42	11.05	8.78	2.33	4.65	6.69	11.55	6.53	11.28
Merged-chr9-90077036-3	chr9	90076931	90077131	+	631.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007801)	TTS (NM_007801)	22764.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	8.48	5.03	1.14	8.45	7.77	7.21	8.3	5.19	9.05	9.54	9.04	9.08
Merged-chr5-145140929-3	chr5	145140807	145141007	+	631.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	470.0	NM_001310770	231889.0	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	7.27	2.77	8.56	7.64	5.32	7.21	2.33	3.7	12.0	10.54	5.53	10.96
Merged-chr6-29735497-3	chr6	29735408	29735608	+	631.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176996)	promoter-TSS (NM_176996)	11.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	6.86	7.04	16.54	10.05	11.86	7.84	6.31	6.64	9.64	5.52	5.53	5.95
Merged-chr1-106232049-2	chr1	106231938	106232138	+	631.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60169.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.85	7.04	6.85	7.24	9.0	7.21	10.3	7.32	6.49	8.03	13.06	5.64
Merged-chr9-118082947-2	chr9	118082863	118083063	+	631.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	42441.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	4.85	3.77	3.99	4.02	6.14	3.45	4.98	6.62	7.67	4.52	6.03	7.21
Merged-chr11-30799687-2	chr11	30799583	30799783	+	631.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 3 of 46)	B3A|SINE|B2	27908.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	6.46	2.77	4.56	6.44	10.23	10.66	7.31	6.59	8.65	4.52	11.05	6.58
Merged-chr4-62764269-1	chr4	62764169	62764369	+	631.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90295.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.86	4.28	3.99	2.82	6.55	6.59	5.31	5.75	5.7	5.02	11.05	5.33
Merged-chr3-96562639-3	chr3	96562521	96562721	+	631.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023719)	TTS (NM_023719)	4180.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.46	5.03	7.42	7.64	5.73	12.23	2.99	3.9	7.28	5.02	10.55	7.52
Merged-chr9-45260928-1	chr9	45260828	45261028	+	631.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136903, intron 4 of 5)	MIRb|SINE|MIR	5779.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	5.65	6.04	2.28	2.41	8.18	10.03	6.31	5.27	2.36	2.01	5.02	4.07
Merged-chr9-66615258-2	chr9	66615160	66615360	+	631.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22145.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	9.29	2.26	9.7	6.84	9.41	9.41	2.99	5.58	4.72	6.53	7.54	2.51
Merged-chr12-111746220-2	chr12	111746103	111746303	+	631.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-12646.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	7.27	5.79	9.7	5.23	6.14	5.64	3.65	6.93	3.54	3.51	6.53	1.25
Merged-chr15-6570633-3	chr15	6570544	6570744	+	631.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9203.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	8.08	8.05	6.28	5.63	9.0	10.98	4.98	4.15	25.18	11.05	11.56	11.9
Merged-chr13-110558059-1	chr13	110557959	110558159	+	631.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163015.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.81	2.52	0.0	0.4	0.41	1.88	3.65	0.31	6.29	6.53	11.05	1.57
Merged-chr8-85085865-1	chr8	85085765	85085965	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010764, intron 4 of 23)	intron (NM_010764, intron 4 of 23)	2596.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.4	0.5	3.42	4.42	6.95	2.2	4.65	8.8	3.74	1.51	3.01	5.33
Merged-chr3-116601140-1	chr3	116601040	116601240	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	6182.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	11.31	8.3	4.56	8.85	7.36	11.29	3.65	5.24	4.13	4.52	5.02	6.27
Merged-chrX-77356591-1	chrX	77356491	77356691	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-154636.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	3.23	3.52	5.13	3.22	5.73	15.05	4.65	5.19	5.31	11.05	6.53	2.51
Merged-chr9-63604441-1	chr9	63604341	63604541	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	1795.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.04	3.02	5.7	4.83	4.5	5.96	6.31	5.8	3.15	6.53	6.53	5.01
Merged-chrX-98919633-2	chrX	98919542	98919742	+	631.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18139.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	3.63	6.79	5.13	7.64	7.36	4.39	5.31	7.12	4.52	13.56	4.52	3.13
Merged-chr3-104714452-2	chr3	104714376	104714576	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63071.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	1.62	4.53	0.0	2.41	6.14	2.2	5.31	4.57	6.49	5.02	11.56	5.33
Merged-chr7-99374544-2	chr7	99374448	99374648	+	631.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-6970.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	9.29	6.04	2.85	3.22	5.32	4.08	1.0	1.57	16.13	10.04	9.55	6.89
Merged-chr14-46831503-1	chr14	46831403	46831603	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-631.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	8.88	7.04	2.85	3.62	4.09	8.47	11.29	5.36	6.88	4.52	7.54	6.27
Merged-chr11-90418161-1	chr11	90418061	90418261	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-27244.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.4	5.53	10.27	2.01	5.32	2.82	5.31	6.14	6.49	3.51	3.52	1.57
Merged-chr12-73585287-1	chr12	73585187	73585387	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008856, exon 1 of 14)	exon (NM_008856, exon 1 of 14)	491.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.85	6.29	7.99	3.22	1.23	4.7	6.98	4.88	4.33	3.51	4.02	0.94
Merged-chr1-134151876-2	chr1	134151778	134151978	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001284524)	TTS (NM_001284524)	-30526.0	NM_007695	12654.0	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	1.62	3.02	7.99	4.02	2.45	10.98	3.65	6.11	7.67	11.05	13.06	7.21
Merged-chrX-108835330-1	chrX	108835230	108835430	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081477)	promoter-TSS (NM_001081477)	852.0	NR_015493	69964.0	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	2.83	4.28	0.0	2.82	8.18	4.39	2.99	5.97	4.33	0.5	6.03	3.76
Merged-chr6-120457287-2	chr6	120457212	120457412	+	631.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5885.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.65	10.31	5.7	11.26	4.91	5.33	3.99	3.98	11.01	11.05	8.54	7.21
Merged-chr5-137338824-1	chr5	137338724	137338924	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1964.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	2.42	5.79	3.42	3.22	6.55	5.96	2.33	4.57	4.33	4.52	3.52	2.82
Merged-chr12-89291449-2	chr12	89291330	89291530	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	338040.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	5.25	1.76	2.85	2.41	4.09	4.39	3.65	6.7	8.85	9.04	13.06	5.95
Merged-chr2-45244880-2	chr2	45244785	45244985	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127443.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.44	1.26	6.85	8.85	2.86	5.64	1.33	6.31	7.28	4.02	5.53	7.83
Merged-chr2-118900468-2	chr2	118900371	118900571	+	631.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1144.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	9.69	7.29	7.99	10.05	8.18	7.84	8.97	6.62	6.49	7.03	10.05	7.21
Merged-chr7-79368885-3	chr7	79368788	79368988	+	631.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18139.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	8.48	5.79	10.27	10.46	5.73	5.64	8.3	8.13	10.23	11.05	5.53	10.34
Merged-chr11-59219162-2	chr11	59219081	59219281	+	631.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	B3A|SINE|B2	8981.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	7.67	6.04	5.7	4.02	11.86	10.66	2.66	6.31	6.29	4.52	8.04	12.53
Merged-chr5-139750704-2	chr5	139750613	139750813	+	631.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026748)	TTS (NM_026748)	-14380.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.04	9.06	3.42	2.41	8.18	14.11	3.65	5.58	9.83	8.54	6.03	5.33
Merged-chr10-121370961-1	chr10	121370861	121371061	+	631.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	B3|SINE|B2	5871.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.63	5.53	0.0	2.01	2.86	11.6	4.32	2.47	16.72	10.54	14.57	6.89
Merged-chr16-91740714-1	chr16	91740614	91740814	+	631.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11343.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	8.88	7.55	9.7	7.64	9.0	7.53	5.31	5.69	3.15	3.51	5.53	5.95
Merged-chr19-53945505-3	chr19	53945425	53945625	+	631.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	649.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	5.25	6.54	6.85	7.24	12.27	5.02	7.31	8.8	7.87	10.04	10.05	2.82
Merged-chr1-36923216-2	chr1	36923120	36923320	+	631.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	B3|SINE|B2	16307.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	8.48	7.55	3.99	4.02	8.59	9.09	15.94	4.43	5.9	8.54	2.01	2.51
Merged-chr2-165957657-2	chr2	165957565	165957765	+	631.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-34972.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.81	1.01	2.28	2.01	2.05	3.45	2.33	5.52	7.47	11.05	13.06	6.89
Merged-chr16-24012371-2	chr16	24012341	24012541	+	631.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23589.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.4	5.53	0.0	1.61	2.05	4.08	4.98	2.05	1.77	3.01	2.51	1.25
Merged-chr12-32920412-2	chr12	32920330	32920530	+	631.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_044986, intron 5 of 5)	intron (NR_044986, intron 5 of 5)	33359.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	7.27	5.79	3.99	3.62	4.09	8.15	10.63	6.17	8.26	15.06	6.03	2.82
Merged-chr10-34279428-2	chr10	34279319	34279519	+	631.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2771.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	6.46	3.27	2.85	4.83	8.18	5.96	3.65	6.11	9.05	8.03	8.54	6.89
Merged-chr4-150837602-2	chr4	150837509	150837709	+	631.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040649, intron 3 of 3)	intron (NR_040649, intron 3 of 3)	-16187.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	12.52	5.03	7.42	6.03	16.36	22.58	8.3	5.92	7.67	10.54	8.04	4.07
Merged-chr2-5130313-2	chr2	5130211	5130411	+	631.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7465.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	1.62	5.53	1.71	13.67	6.55	6.59	7.31	4.12	10.62	10.54	19.6	10.65
Merged-chrX-150981786-1	chrX	150981686	150981886	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	35507.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.81	2.26	2.28	5.23	7.36	1.25	0.66	4.88	1.77	5.52	1.51	0.63
Merged-chr10-80604228-1	chr10	80604128	80604328	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1346.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	1.62	3.02	8.56	1.61	10.64	5.02	3.99	7.26	6.49	4.02	2.01	3.13
Merged-chr10-99485771-2	chr10	99485639	99485839	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-123432.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	4.85	1.26	13.69	8.85	7.77	1.88	3.32	6.42	5.51	6.03	8.04	2.51
Merged-chr3-38571339-1	chr3	38571239	38571439	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-86523.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.4	0.5	3.42	2.01	3.27	8.15	8.3	2.24	5.11	8.03	8.54	8.46
Merged-chr5-95914833-1	chr5	95914733	95914933	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42106.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	2.42	4.02	1.71	4.02	2.45	6.59	6.64	5.3	6.49	6.53	6.53	1.88
Merged-chr8-123022877-1	chr8	123022777	123022977	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	19407.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.63	3.27	1.71	2.41	7.36	8.78	1.99	2.44	5.51	8.54	6.53	0.94
Merged-chr4-55364529-1	chr4	55364429	55364629	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	B3|SINE|B2	14487.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	8.48	4.02	7.42	3.62	4.91	6.9	3.99	5.16	8.46	4.52	5.53	3.13
Merged-chr4-3496227-1	chr4	3496127	3496327	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40863.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.81	0.0	0.0	1.61	2.05	0.31	0.66	0.0	14.75	10.54	8.54	6.89
Merged-chr11-72428836-2	chr11	72428730	72428930	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6696.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	3.23	6.79	16.54	5.23	9.41	6.27	3.65	3.11	7.47	7.53	6.03	7.83
Merged-chr19-10022071-1	chr19	10021971	10022171	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	3877.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	2.83	0.5	0.57	2.41	5.73	2.2	2.99	7.09	11.8	3.01	6.03	1.57
Merged-chr15-101317982-1	chr15	101317882	101318082	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24770.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	8.88	2.26	3.99	8.04	8.18	9.09	1.66	5.19	5.7	8.54	7.03	7.83
Merged-chr15-80706836-1	chr15	80706736	80706936	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4477.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	5.65	1.51	0.0	5.63	5.73	2.2	2.99	4.96	5.11	8.03	3.52	2.82
Merged-chrX-7288956-1	chrX	7288856	7289056	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	30402.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	6.06	3.02	4.56	3.62	3.68	3.14	6.64	9.06	2.56	2.01	4.02	3.13
Merged-chr3-59220637-1	chr3	59220537	59220737	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-9755.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.44	4.78	6.85	2.41	4.91	1.88	4.98	5.05	7.67	1.51	5.53	5.01
Merged-chr1-36066427-1	chr1	36066327	36066527	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1973.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.23	2.77	3.42	4.02	5.32	1.88	1.99	5.33	4.13	2.01	2.51	4.39
Merged-chr2-124577589-1	chr2	124577489	124577689	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-32707.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.63	5.53	5.7	0.8	6.14	9.41	3.32	4.09	8.46	4.52	5.02	2.82
Merged-chr15-39975083-1	chr15	39974983	39975183	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12434.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	3.23	1.01	0.0	0.0	2.45	1.57	7.31	3.5	0.59	2.01	3.01	3.45
Merged-chr2-78841945-1	chr2	78841845	78842045	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-27102.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.04	1.26	4.56	6.84	5.32	3.45	2.66	6.9	4.92	1.51	5.53	4.07
Merged-chr1-85280547-1	chr1	85280447	85280647	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9981.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.42	3.52	4.56	5.63	0.82	2.82	5.98	4.96	0.0	0.0	0.0	0.63
Merged-chr18-27021758-1	chr18	27021658	27021858	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1267601.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.42	3.52	1.14	0.4	2.86	1.88	2.33	2.61	8.26	2.51	6.03	4.07
Merged-chr8-95534128-1	chr8	95534028	95534228	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172914)	promoter-TSS (NM_172914)	28.0	NM_172914	244608.0	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	3.23	4.02	1.14	2.41	4.91	3.14	3.99	6.08	4.92	1.51	4.52	4.7
Merged-chr11-69031897-1	chr11	69031797	69031997	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-13740.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	1.62	2.26	1.71	7.24	11.05	3.45	6.98	6.56	8.26	9.04	8.04	5.64
Merged-chr15-98571241-1	chr15	98571141	98571341	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_028442)	TTS (NR_028442)	237.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	3.23	0.5	1.71	0.4	6.95	5.64	1.66	5.66	5.51	1.51	9.55	1.57
Merged-chr6-129713004-1	chr6	129712904	129713104	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	4128.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	4.44	3.52	5.7	7.64	6.95	3.45	1.99	7.51	7.08	2.51	12.56	4.07
Merged-chr19-4439409-1	chr19	4439309	4439509	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	34.0	NM_007485	11854.0	Mm.27701	NM_007485	ENSMUSG00000041845	Rhod	AI326383|Arhd|Rho|RhoHP1|RhoM	ras homolog family member D	protein-coding	5.25	4.28	0.57	3.62	9.0	2.2	2.66	0.95	6.1	12.55	6.03	3.76
Merged-chr4-3790018-1	chr4	3789918	3790118	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	45637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.02	5.28	5.7	2.01	4.09	5.96	2.66	1.49	2.36	9.04	2.01	0.63
Merged-chr11-60559406-1	chr11	60559306	60559506	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172943)	TTS (NM_172943)	21723.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	7.27	8.55	0.57	3.22	3.68	7.84	0.0	2.19	1.38	2.51	0.5	0.94
Merged-chr1-156617434-1	chr1	156617334	156617534	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	(GGAA)n|Simple_repeat|Simple_repeat	56905.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	1.62	2.52	1.14	1.61	2.86	5.64	0.66	4.09	10.23	5.02	8.54	6.58
Merged-chr7-69993149-1	chr7	69993049	69993249	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	344673.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	0.75	1.14	0.0	6.55	2.51	0.33	6.67	5.7	9.04	4.52	5.33
Merged-chr5-123253384-1	chr5	123253284	123253484	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	25194.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	2.83	3.27	0.0	2.82	8.59	2.51	1.66	4.32	2.56	4.02	0.5	0.94
Merged-chr17-23534062-1	chr17	23533962	23534162	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16737.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	3.23	7.04	2.28	13.67	2.45	5.96	4.65	3.11	2.95	2.51	2.01	1.25
Merged-chr17-56132038-1	chr17	56131938	56132138	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130456, intron 3 of 16)	intron (NM_001130456, intron 3 of 16)	1814.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	4.85	5.79	12.55	7.24	6.55	5.96	1.99	3.64	4.92	2.01	18.09	3.45
Merged-chr5-99239310-1	chr5	99239210	99239410	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13617.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.67	4.78	2.85	1.21	14.73	12.23	0.0	2.33	8.06	5.02	4.02	2.51
Merged-chr5-64231923-1	chr5	64231823	64232023	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	1566.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.21	0.5	0.0	3.22	0.82	0.0	4.32	2.78	3.15	3.01	5.02	4.7
Merged-chr14-29969098-1	chr14	29968998	29969198	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019979, intron 1 of 4)	B1_Mur2|SINE|Alu	718.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	4.04	4.28	1.14	4.83	0.82	0.63	3.65	3.11	4.92	4.02	2.01	7.21
Merged-chrX-101416752-1	chrX	101416652	101416852	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177985, intron 4 of 23)	intron (NM_001177985, intron 4 of 23)	3162.0	NM_001177986	56364.0	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	11.71	6.04	2.28	7.64	5.32	5.02	2.66	5.92	5.31	3.01	11.05	2.82
Merged-chr5-144013906-2	chr5	144013804	144014004	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177682, intron 1 of 14)	intron (NM_177682, intron 1 of 14)	949.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	4.44	7.29	6.85	13.67	3.27	8.78	1.33	6.42	9.44	12.05	9.55	4.07
Merged-chr2-52891984-2	chr2	52891886	52892086	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	34118.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.04	4.53	0.0	5.23	12.68	7.53	2.33	3.45	11.6	10.54	7.03	6.27
Merged-chr10-17924320-1	chr10	17924220	17924420	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	MTD|LTR|ERVL-MaLR	23747.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	1.21	4.78	7.99	4.02	3.27	5.64	6.64	6.67	5.51	3.01	6.03	4.7
Merged-chr12-85698611-2	chr12	85698511	85698711	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	11891.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.06	8.8	15.97	0.0	4.91	6.59	5.98	1.21	7.87	8.03	2.51	3.45
Merged-chr8-67956770-1	chr8	67956670	67956870	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17804.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	1.62	2.01	1.14	2.41	5.73	6.59	3.99	4.74	2.75	8.03	3.01	1.57
Merged-chr14-101607668-1	chr14	101607568	101607768	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	1523.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.63	2.01	2.85	5.23	6.55	4.7	6.31	6.79	6.49	1.51	2.51	1.25
Merged-chr19-4628998-2	chr19	4628906	4629106	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033447, intron 13 of 14)	intron (NM_001033447, intron 13 of 14)	-3389.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	14.94	7.04	0.57	9.65	13.5	8.47	1.0	2.58	6.49	6.53	12.56	4.7
Merged-chr5-125391204-1	chr5	125391104	125391304	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1187.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.67	5.03	2.85	2.41	2.45	5.96	2.66	3.93	5.51	7.03	10.05	4.39
Merged-chr13-34647763-1	chr13	34647663	34647863	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	4918.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	5.65	2.01	2.28	3.22	6.14	7.53	1.99	4.35	3.54	0.0	5.53	1.88
Merged-chr7-27436921-1	chr7	27436821	27437021	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	9668.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	7.27	0.75	4.56	4.83	10.23	9.41	3.32	4.26	0.2	1.0	1.51	2.82
Merged-chr6-97292993-1	chr6	97292893	97293093	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-40213.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.02	3.02	0.0	0.0	1.23	0.94	1.33	0.9	0.98	0.0	4.02	1.88
Merged-chr16-22798721-1	chr16	22798621	22798821	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12689.0	NM_009967	12970.0	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	2.02	0.75	6.28	7.24	4.09	5.96	1.99	4.35	5.31	0.0	8.54	2.82
Merged-chr12-69373946-1	chr12	69373846	69374046	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	1796.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	4.78	6.85	6.44	1.64	9.09	3.65	5.13	4.92	3.01	11.56	3.76
Merged-chr8-84256708-1	chr8	84256608	84256808	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026423, intron 1 of 4)	intron (NM_026423, intron 1 of 4)	616.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	6.46	3.27	2.85	2.41	3.68	1.25	2.99	1.51	6.69	1.0	10.05	3.76
Merged-chr9-46314647-2	chr9	46314557	46314757	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183104, intron 3 of 12)	intron (NM_183104, intron 3 of 12)	5329.0	NM_183104	74361.0	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	4.04	1.51	6.85	2.41	6.55	6.27	1.0	3.84	11.41	4.52	4.52	8.14
Merged-chr8-122775471-1	chr8	122775371	122775571	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_144932)	promoter-TSS (NM_144932)	-15.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	4.04	8.55	2.85	6.84	5.32	4.08	1.66	1.51	5.9	4.02	5.53	7.83
Merged-chr17-64751362-2	chr17	64751254	64751454	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 21 of 21)	intron (NM_008549, intron 21 of 21)	-15757.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	6.06	2.77	3.42	7.64	7.36	5.64	3.65	15.59	11.6	13.05	5.53	3.13
Merged-chr13-44272012-1	chr13	44271912	44272112	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-55525.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	3.23	7.29	0.57	0.0	3.68	5.96	3.65	0.36	0.2	0.5	0.0	0.63
Merged-chr16-26349011-1	chr16	26348911	26349111	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22828.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	2.42	3.27	3.42	2.01	0.82	1.25	6.31	5.27	3.54	0.0	4.52	4.07
Merged-chr9-96375506-1	chr9	96375406	96375606	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-11075.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.02	0.5	0.0	1.61	0.82	0.0	1.0	0.03	10.62	7.03	5.02	6.58
Merged-chr6-129331838-2	chr6	129331749	129331949	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199034)	promoter-TSS (NM_199034)	-68.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	4.44	1.26	5.7	0.0	2.86	7.21	2.99	5.02	7.87	3.51	28.14	7.83
Merged-chr7-67232669-1	chr7	67232569	67232769	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291191, exon 11 of 11)	3' UTR (NM_001291191, exon 11 of 11)	10053.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.63	1.51	6.85	0.0	0.0	1.25	6.98	3.76	1.38	0.5	0.5	3.76
Merged-chr19-55703682-1	chr19	55703582	55703782	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1478.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	2.42	4.02	2.28	0.8	2.86	7.21	1.33	5.5	6.88	11.55	0.5	9.08
Merged-chr5-5336719-1	chr5	5336619	5336819	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	L1MB8|LINE|L1	43532.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.04	8.05	6.28	3.22	4.91	4.08	7.31	4.32	8.85	11.55	5.53	6.58
Merged-chr2-94263078-1	chr2	94262978	94263178	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1679.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	1.62	1.01	1.14	3.22	4.09	1.25	0.66	1.21	9.44	14.06	6.03	8.46
Merged-chr18-53937392-1	chr18	53937292	53937492	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	75279.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.63	7.8	4.56	11.66	2.45	9.09	4.98	4.43	4.13	0.0	2.01	0.31
Merged-chrX-56322244-1	chrX	56322144	56322344	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4636.0	NR_038168	72030.0	Mm.426148	NR_038168	ENSMUSG00000085114	1600025M17Rik	Gm394	RIKEN cDNA 1600025M17 gene	ncRNA	1.62	0.25	0.57	1.61	6.14	10.98	5.31	6.03	0.2	3.51	2.51	1.25
Merged-chr1-37996310-1	chr1	37996210	37996410	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172054, intron 1 of 4)	MTD|LTR|ERVL-MaLR	898.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.81	1.01	3.42	1.61	0.41	1.25	0.66	2.27	1.77	3.51	0.5	0.94
Merged-chr2-33847632-1	chr2	33847532	33847732	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	L1MB7|LINE|L1	40314.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.81	0.0	3.99	2.82	4.09	6.59	1.0	8.69	2.16	4.02	1.51	3.13
Merged-chr10-80136982-1	chr10	80136882	80137082	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036582, intron 3 of 10)	intron (NR_036582, intron 3 of 10)	405.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	4.85	6.54	6.28	9.25	7.36	3.45	3.32	2.41	6.49	17.57	13.06	6.58
Merged-chr17-69218609-3	chr17	69218488	69218688	+	630.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	58618.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	4.85	6.29	18.25	8.04	8.18	9.72	8.97	10.15	6.88	3.01	10.05	2.82
Merged-chr7-99544717-3	chr7	99544645	99544845	+	630.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-7524.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	4.44	5.79	12.55	9.65	7.36	5.33	8.97	6.25	5.11	9.04	11.56	3.13
Merged-chr9-107268193-3	chr9	107268108	107268308	+	630.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	21188.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	12.92	7.55	2.28	5.23	7.36	5.96	8.64	13.85	10.82	6.53	9.04	6.27
Merged-chr1-80475171-2	chr1	80475076	80475276	+	630.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	29244.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	8.08	2.26	8.56	9.65	6.95	3.76	4.32	13.74	8.46	5.02	12.56	13.47
Merged-chr4-58422853-2	chr4	58422761	58422961	+	630.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18237.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	10.09	9.06	13.12	8.85	7.36	4.39	6.64	2.97	12.78	13.05	6.03	1.57
Merged-chr11-73137777-2	chr11	73137668	73137868	+	630.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	526.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	4.04	10.31	2.28	1.61	5.73	7.84	0.66	6.11	7.08	1.0	15.58	7.21
Merged-chr19-29403104-3	chr19	29402985	29403185	+	630.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7834.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.86	7.29	2.28	6.44	9.41	9.72	9.3	6.45	6.49	11.55	7.54	7.21
Merged-chr8-34216753-2	chr8	34216665	34216865	+	630.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-50053.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	3.23	1.51	2.28	2.41	5.73	5.33	1.33	5.27	16.13	5.52	21.1	6.89
Merged-chr13-9281436-1	chr13	9281336	9281536	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	4911.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.04	1.26	6.85	4.42	6.55	5.33	3.32	7.46	6.29	11.55	7.03	1.57
Merged-chr19-36371699-1	chr19	36371599	36371799	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7368.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	1.21	2.26	1.14	1.21	6.55	10.03	1.33	4.99	5.11	3.51	3.01	3.13
Merged-chr10-19291693-2	chr10	19291595	19291795	+	630.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64844.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	9.69	4.53	5.7	8.85	1.64	7.53	1.0	5.64	3.15	1.0	1.0	0.31
Merged-chr2-27425651-1	chr2	27425551	27425751	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	1957.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	2.02	2.01	2.28	0.8	2.45	8.15	3.99	6.84	2.16	8.03	3.01	2.82
Merged-chr6-129284544-1	chr6	129284444	129284644	+	630.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9175.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	3.23	3.52	3.42	0.8	4.5	5.02	0.0	2.3	12.39	1.0	10.05	6.27
Merged-chr10-63381767-1	chr10	63381667	63381867	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001253685)	promoter-TSS (NM_001253685)	-676.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	5.65	4.02	0.0	5.23	10.64	6.59	3.99	5.64	4.13	6.03	5.02	9.4
Merged-chr8-120704433-2	chr8	120704341	120704541	+	630.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31917.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.85	13.08	3.42	12.87	4.91	7.21	3.32	3.31	7.87	8.03	14.57	1.57
Merged-chr4-134773560-1	chr4	134773460	134773660	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-5556.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.44	6.79	5.7	8.45	1.64	7.84	6.98	5.8	3.93	2.51	5.02	8.77
Merged-chr7-126587274-2	chr7	126587119	126587319	+	630.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	-1402.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	5.25	3.77	5.7	4.42	8.59	6.59	0.33	1.96	5.51	4.02	3.01	5.33
Merged-chr8-109737187-1	chr8	109737087	109737287	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080930, intron 1 of 3)	intron (NM_001080930, intron 1 of 3)	552.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	4.04	4.02	6.28	0.4	5.73	3.45	7.97	4.35	2.56	2.51	2.51	7.52
Merged-chr16-93543881-2	chr16	93543774	93543974	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59941.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	11.31	5.79	4.56	4.02	5.73	6.9	8.3	6.11	6.1	2.51	12.56	8.46
Merged-chr9-22327243-1	chr9	22327143	22327343	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	3447.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	1.62	1.76	4.56	4.83	5.73	3.76	6.64	4.99	1.18	13.05	4.02	4.07
Merged-chr1-64120700-2	chr1	64120577	64120777	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	712.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	2.83	5.28	6.28	5.23	4.5	6.59	5.31	3.5	5.11	12.05	10.55	7.83
Merged-chr10-80057799-2	chr10	80057691	80057891	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183426, exon 32 of 32)	exon (NM_183426, exon 32 of 32)	3772.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	5.25	2.52	2.85	8.04	4.91	3.76	5.31	5.8	10.23	3.51	15.58	6.58
Merged-chr10-26760537-2	chr10	26760434	26760634	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11978.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	8.88	3.77	1.14	2.82	4.5	7.53	7.97	5.38	6.1	3.01	8.04	3.76
Merged-chr2-91087605-1	chr2	91087505	91087705	+	630.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9073.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	6.06	4.28	4.56	9.65	7.36	10.98	2.66	4.93	5.11	8.03	7.54	4.39
Merged-chrX_GL456233_random-159726-1	chrX_GL456233_random	159626	159826	+	630.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138758)	promoter-TSS (NM_138758)	79.0	NM_138758	192289.0	Mm.394228	NM_138758	ENSMUSG00000079834	Tmlhe	Bbox2|D430017M14Rik|TMLH	trimethyllysine hydroxylase, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	8.26	12.55	9.55	5.95
Merged-chr4-155833382-1	chr4	155833282	155833482	+	630.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025338)	TTS (NM_025338)	2113.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	1.62	0.75	0.0	1.61	1.23	0.0	0.0	0.98	10.23	8.54	21.1	10.34
Merged-chr1-154003873-1	chr1	154003773	154003973	+	630.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103944.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	7.27	5.79	2.28	6.44	8.18	3.76	5.31	5.75	7.67	7.53	5.02	4.07
Merged-chr8-108983268-2	chr8	108983183	108983383	+	630.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	46423.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	5.65	4.28	7.99	3.62	4.5	3.76	4.65	6.28	13.57	9.54	5.53	4.7
Merged-chr9-46009167-2	chr9	46009083	46009283	+	630.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357241, intron 1 of 5)	RMER10A|LTR|ERVL	3507.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	8.08	4.78	3.99	5.63	3.68	11.92	1.66	4.54	11.6	16.57	7.03	6.89
Merged-chr4-133609908-2	chr4	133609810	133610010	+	630.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 7 of 7)	intron (NM_001017968, intron 7 of 7)	-7742.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	6.46	3.52	2.28	1.61	4.91	8.47	6.98	4.6	6.1	22.09	14.07	6.58
Merged-chr13-99939488-3	chr13	99939397	99939597	+	630.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-38814.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	6.86	12.32	9.7	7.64	7.36	9.09	6.98	5.52	11.6	4.02	7.54	9.08
Merged-chr11-102318834-3	chr11	102318724	102318924	+	630.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011551, intron 1 of 20)	CpG-2669	272.0	NM_001302955	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	4.85	5.53	12.55	2.82	9.0	5.33	6.31	5.13	9.83	0.5	10.05	4.39
Merged-chr17-14545963-1	chr17	14545863	14546063	+	630.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147021.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.0	1.26	2.28	2.01	1.64	6.9	2.99	3.03	9.83	9.04	15.07	9.71
Merged-chr16-49766518-2	chr16	49766427	49766627	+	630.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	67233.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	4.85	4.02	2.28	7.64	7.36	7.53	4.98	5.66	7.67	10.04	13.57	6.27
Merged-chr7-3601406-3	chr7	3601292	3601492	+	630.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14765.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	8.48	10.31	5.13	8.04	16.36	6.9	6.64	6.93	11.41	15.06	14.07	6.58
Merged-chr9-14764996-1	chr9	14764896	14765096	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029306, intron 2 of 3)	intron (NM_029306, intron 2 of 3)	6034.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.81	5.28	2.28	2.41	2.86	2.51	3.99	4.99	2.75	3.01	0.5	2.82
Merged-chr9-121923580-1	chr9	121923480	121923680	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER68B|LTR|ERVL	-7275.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0.81	3.27	2.85	4.42	0.0	1.57	4.65	0.95	1.77	2.01	2.01	3.13
Merged-chr13-40860096-1	chr13	40859996	40860196	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_023887, exon 1 of 3)	5' UTR (NM_023887, exon 1 of 3)	328.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.25	7.04	4.56	3.62	4.09	7.53	7.64	4.82	5.51	5.52	5.53	1.57
Merged-chr6-72881824-1	chr6	72881724	72881924	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	MTD|LTR|ERVL-MaLR	17468.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	5.65	4.02	3.42	4.02	9.0	4.39	2.33	4.21	4.72	9.54	5.53	3.76
Merged-chr5-135023604-1	chr5	135023504	135023704	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016801, exon 1 of 10)	exon (NM_016801, exon 1 of 10)	122.0	NR_133683	20907.0	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	4.04	3.02	5.13	1.21	0.41	2.2	0.0	0.76	1.38	2.51	4.02	1.57
Merged-chr13-30544581-1	chr13	30544481	30544681	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025710, intron 1 of 1)	intron (NM_025710, intron 1 of 1)	735.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	2.02	3.52	2.28	6.44	1.23	3.14	3.65	4.99	5.9	1.51	5.53	2.82
Merged-chr18-24363727-2	chr18	24363626	24363826	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24360.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	3.23	4.02	0.0	1.61	4.5	14.74	6.31	8.27	16.13	6.03	3.52	6.58
Merged-chr15-50363118-1	chr15	50363018	50363218	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	525931.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.83	3.52	5.7	7.64	4.09	5.96	3.65	4.93	5.7	4.02	2.01	3.13
Merged-chr3-30718787-1	chr3	30718687	30718887	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18944.0	NM_001309233	320352.0	Mm.229153	NM_001309233	ENSMUSG00000074653	Lrrc31	E230002P03Rik	leucine rich repeat containing 31	protein-coding	2.02	5.53	10.84	12.47	0.82	2.51	3.32	2.02	4.33	0.0	4.52	4.07
Merged-chr5-33630250-1	chr5	33630150	33630350	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-615.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	4.44	2.77	7.99	0.4	9.82	5.02	4.65	5.5	9.24	7.03	1.0	2.19
Merged-chr1-59907921-1	chr1	59907821	59908021	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5085.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	2.42	1.76	1.14	0.8	7.36	10.98	2.66	4.04	5.31	3.51	5.53	5.33
Merged-chr10-17568014-1	chr10	17567914	17568114	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155214.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.04	3.02	2.28	10.46	5.32	2.2	9.63	5.24	4.72	1.51	6.03	2.51
Merged-chr14-19969284-1	chr14	19969184	19969384	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	7409.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.65	2.52	9.13	6.03	3.27	6.9	3.32	4.99	6.69	1.0	6.53	5.33
Merged-chr1-105199520-1	chr1	105199420	105199620	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156487.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.81	0.0	1.14	4.02	4.91	1.25	3.65	5.44	6.29	9.54	12.06	7.52
Merged-chr13-36207128-1	chr13	36207028	36207228	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	89485.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	8.08	2.01	5.7	2.41	2.45	2.51	5.98	4.29	2.75	4.02	4.02	5.33
Merged-chr1-165700605-2	chr1	165700504	165700704	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7490.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.67	7.55	3.42	0.0	2.86	6.27	8.3	4.96	7.47	11.05	6.03	1.25
Merged-chr8-46953593-1	chr8	46953493	46953693	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33294.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.85	4.28	4.56	4.02	5.73	5.33	3.99	5.72	6.1	10.04	2.51	3.13
Merged-chr15-80029987-1	chr15	80029887	80030087	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-15179.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.04	0.5	0.0	0.0	0.82	1.57	0.66	0.22	11.8	7.53	2.51	5.33
Merged-chr11-70458414-1	chr11	70458314	70458514	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151499, intron 3 of 5)	B2_Mm2|SINE|B2	-1019.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	1.62	1.51	1.71	0.8	1.23	4.39	0.0	2.21	6.49	4.02	5.53	3.13
Merged-chr6-91576089-2	chr6	91575994	91576194	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60059.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	7.67	6.54	5.13	12.07	9.0	4.7	2.99	4.54	9.05	9.54	8.04	5.01
Merged-chr1-39983181-1	chr1	39983081	39983281	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001252201, exon 7 of 31)	exon (NM_001252201, exon 7 of 31)	82268.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	1.62	5.03	0.57	2.01	2.45	5.02	4.98	5.5	0.79	0.5	2.51	2.82
Merged-chr1-152607630-1	chr1	152607530	152607730	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17587.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.85	8.55	0.0	6.03	3.27	5.33	0.66	3.98	3.93	7.03	3.52	0.0
Merged-chr16-38821177-1	chr16	38821077	38821277	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029042, intron 3 of 3)	intron (NM_029042, intron 3 of 3)	7572.0	NM_029042	74663.0	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	6.86	6.04	3.42	11.26	4.91	2.51	1.99	5.3	10.03	9.54	9.04	5.64
Merged-chr11-11836870-1	chr11	11836770	11836970	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016672, intron 8 of 14)	intron (NM_016672, intron 8 of 14)	-27908.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	5.65	2.77	0.0	2.82	3.27	5.96	4.32	5.36	5.7	4.52	4.52	2.51
Merged-chr2-31765641-1	chr2	31765541	31765741	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	B4A|SINE|B4	5468.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.85	3.77	1.14	1.21	3.68	0.63	7.31	3.9	10.23	1.0	1.0	8.46
Merged-chr11-52368421-1	chr11	52368321	52368521	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	7559.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	4.85	5.03	8.56	7.64	6.95	5.96	6.31	5.94	6.88	9.54	8.04	0.0
Merged-chr13-9767593-1	chr13	9767493	9767693	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2272.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	4.53	3.99	0.8	2.45	0.0	2.33	1.51	2.56	3.51	1.51	1.25
Merged-chr2-145588614-1	chr2	145588514	145588714	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33632.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	5.65	2.77	3.99	9.65	6.14	5.33	4.65	7.23	5.31	2.01	6.03	3.13
Merged-chr15-57889740-1	chr15	57889640	57889840	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	2678.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.81	1.51	0.0	0.0	7.36	2.82	1.33	1.18	2.36	3.01	4.52	2.19
Merged-chr5-120457697-1	chr5	120457597	120457797	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133902)	TTS (NM_133902)	15066.0	NM_133902	257635.0	Mm.5162	NM_133902	ENSMUSG00000029596	Sdsl	4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH	serine dehydratase-like	protein-coding	2.42	4.28	1.14	0.8	4.5	4.7	2.66	1.6	7.87	6.53	5.53	1.88
Merged-chr7-126607215-1	chr7	126607115	126607315	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12305.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	11.31	8.55	12.55	6.84	3.68	16.93	1.33	4.12	6.69	6.53	4.02	1.88
Merged-chr3-55354885-2	chr3	55354746	55354946	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106882.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.81	3.52	2.28	1.21	3.27	1.88	4.65	2.94	12.59	6.03	7.54	7.83
Merged-chr5-129584937-1	chr5	129584837	129585037	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011846, intron 1 of 9)	CpG	768.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	3.63	4.78	0.0	9.25	3.68	2.82	8.97	4.57	4.13	3.51	6.53	4.7
Merged-chr10-128548598-2	chr10	128548459	128548659	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	609.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	8.08	8.3	5.7	4.42	5.32	5.33	1.66	3.53	5.7	10.04	8.04	8.77
Merged-chr12-81889159-1	chr12	81889059	81889259	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 1 of 35)	L1MB2|LINE|L1	29129.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	1.62	3.52	1.14	2.41	8.59	3.45	5.65	5.66	5.11	2.51	2.01	4.7
Merged-chr11-51820141-1	chr11	51820041	51820241	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 11 of 12)	B3|SINE|B2	37340.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.65	1.76	5.7	2.41	4.91	6.9	3.32	3.56	13.37	8.54	3.52	6.58
Merged-chr9-108761769-1	chr9	108761669	108761869	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34225.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	8.88	4.02	3.99	4.02	6.95	5.02	1.0	6.59	6.88	13.56	8.54	2.82
Merged-chr15-9009717-1	chr15	9009617	9009817	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_198024, intron 6 of 13)	(CA)n|Simple_repeat|Simple_repeat	41768.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	8.48	6.04	5.13	4.02	4.5	0.31	3.65	3.2	4.72	3.51	5.53	4.07
Merged-chr8-34066227-1	chr8	34066127	34066327	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41587.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	6.46	6.29	1.71	3.22	4.09	7.84	2.99	4.99	5.11	3.01	0.5	3.13
Merged-chr12-80818567-1	chr12	80818467	80818667	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	MIRb|SINE|MIR	28035.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	1.21	4.28	4.56	3.22	2.86	5.96	2.33	4.96	6.1	13.05	2.01	8.46
Merged-chr11-61497796-2	chr11	61497693	61497893	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-3527.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	4.85	5.53	12.55	3.22	2.86	6.27	4.65	7.71	9.24	15.57	7.54	5.95
Merged-chr11-93812697-1	chr11	93812597	93812797	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73069.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	1.21	1.51	0.0	0.8	2.45	5.02	2.66	5.55	3.54	4.02	7.54	6.89
Merged-chrX-38564155-1	chrX	38564055	38564255	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001110142, exon 4 of 23)	exon (NM_001110142, exon 4 of 23)	12041.0	NM_028288	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	3.23	1.76	2.28	1.61	2.86	0.63	5.31	5.16	1.77	3.51	5.02	4.7
Merged-chr8-74972544-1	chr8	74972444	74972644	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-21106.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	3.23	5.03	2.28	2.01	3.68	4.39	7.31	5.07	6.1	3.51	3.01	5.95
Merged-chr8-52450928-1	chr8	52450828	52451028	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	94317.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	4.44	5.79	0.0	1.61	9.0	5.02	7.64	6.45	3.34	0.5	6.03	0.94
Merged-chr5-104044307-1	chr5	104044207	104044407	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2557.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	2.83	3.02	7.99	1.21	2.86	3.45	5.65	4.99	1.38	2.01	5.02	1.25
Merged-chr3-51217183-1	chr3	51217083	51217283	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7264.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	2.26	0.0	0.4	4.5	3.76	0.66	1.4	3.93	2.01	2.51	1.57
Merged-chrX-36031464-2	chrX	36031374	36031574	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 37 of 52)	intron (NM_001009947, intron 37 of 52)	-80634.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	4.04	2.26	9.13	8.45	6.14	0.0	3.65	9.67	2.56	9.04	0.0	3.13
Merged-chr7-25599823-2	chr7	25599732	25599932	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16060.0	NM_001039243	632778.0	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	8.08	4.28	5.13	3.62	9.82	3.76	1.33	6.03	6.88	4.02	4.52	9.08
Merged-chr11-107334302-1	chr11	107334202	107334402	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136418.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.81	1.01	0.0	0.8	5.73	2.51	3.32	6.28	3.34	3.01	3.01	1.57
Merged-chr13-28757433-1	chr13	28757333	28757533	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-46560.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.4	2.77	0.0	2.41	0.82	5.64	1.99	4.54	0.2	1.51	3.01	1.57
Merged-chr8-94172134-1	chr8	94172034	94172234	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-484.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	2.83	5.28	3.42	0.8	9.0	2.51	3.32	6.28	7.87	5.52	7.03	6.27
Merged-chr1-89454079-1	chr1	89453979	89454179	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-732.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.65	2.01	2.85	0.4	2.05	1.57	4.32	4.77	4.13	2.51	5.02	3.76
Merged-chr9-42150264-1	chr9	42150164	42150364	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25967.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.83	11.07	10.27	2.41	6.55	3.76	3.99	2.02	4.33	3.01	2.01	2.19
Merged-chr11-61761605-1	chr11	61761505	61761705	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144806, intron 1 of 11)	(A)n|Simple_repeat|Simple_repeat	483.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	14.54	8.8	9.13	2.41	8.59	5.02	4.32	3.14	4.72	15.06	7.03	6.27
Merged-chr2-132701594-1	chr2	132701494	132701694	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	10996.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	2.02	3.52	0.57	2.01	5.32	7.21	1.66	4.23	7.47	5.02	7.03	4.39
Merged-chr13-24960153-1	chr13	24960053	24960253	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008156, intron 8 of 25)	intron (NM_008156, intron 8 of 25)	17001.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	1.62	2.26	9.7	4.02	3.68	2.82	3.99	4.46	1.38	1.51	7.03	1.25
Merged-chr11-90666309-1	chr11	90666209	90666409	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028011, intron 7 of 15)	intron (NM_028011, intron 7 of 15)	-3310.0	NM_001357547	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	5.25	4.02	3.42	4.02	5.73	6.9	1.0	4.68	0.2	0.5	0.0	0.31
Merged-chr5-90930768-1	chr5	90930668	90930868	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	-428.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	3.63	3.02	1.14	4.02	6.95	10.66	0.33	3.64	11.41	3.01	5.53	2.82
Merged-chr13-35388595-1	chr13	35388495	35388695	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-176547.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	3.23	1.76	3.42	6.03	3.27	3.14	5.98	9.5	0.98	5.52	1.0	0.63
Merged-chr14-103387263-1	chr14	103387163	103387363	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40463.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.4	1.01	2.85	3.22	4.5	4.39	4.32	5.72	2.36	1.0	2.01	0.31
Merged-chr18-37849648-1	chr18	37849548	37849748	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5012.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	5.65	1.26	3.42	5.23	8.59	2.51	3.99	7.18	1.77	1.0	2.51	5.64
Merged-chr17-11129312-1	chr17	11129212	11129412	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 2 of 6)	intron (NM_001317726, intron 2 of 6)	288953.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	1.21	1.01	5.7	2.41	2.45	5.64	3.32	7.09	1.18	0.0	1.0	1.88
Merged-chr13-117034931-2	chr13	117034851	117035051	+	629.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9435.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	1.21	3.52	0.0	0.0	11.45	11.29	6.64	4.79	9.83	3.51	11.56	3.13
Merged-chr1-180858938-1	chr1	180858838	180859038	+	629.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145943, intron 3 of 6)	ORR1B1|LTR|ERVL-MaLR	7787.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	3.63	6.04	1.71	3.22	1.64	9.41	2.99	2.5	9.64	13.05	10.05	7.21
Merged-chr4-148074745-1	chr4	148074645	148074845	+	629.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	13319.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.23	4.53	7.99	9.25	11.45	13.48	6.98	6.98	4.92	9.04	7.54	10.02
Merged-chr11-75649435-3	chr11	75649346	75649546	+	629.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008916)	TTS (NM_008916)	-2063.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	8.48	6.79	3.42	7.64	5.32	4.08	2.99	2.86	6.88	4.02	7.03	7.21
Merged-chr15-99818434-2	chr15	99818351	99818551	+	629.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1698.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.65	8.3	2.85	10.46	2.86	4.39	2.66	1.63	15.14	9.04	12.06	10.34
Merged-chr5-122715942-2	chr5	122715847	122716047	+	629.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310718, intron 2 of 10)	intron (NM_001310718, intron 2 of 10)	8403.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.06	8.05	1.14	0.0	1.64	6.27	6.64	6.64	6.49	7.53	6.53	1.88
Merged-chr11-97645054-2	chr11	97644963	97645163	+	629.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-15347.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	4.85	5.79	3.99	2.01	0.0	11.29	6.64	3.2	11.01	3.51	15.07	6.58
Merged-chr18-60502451-1	chr18	60502351	60502551	+	629.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134133)	promoter-TSS (NM_134133)	-468.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	2.83	2.26	0.0	2.01	11.45	6.9	9.63	3.98	1.38	6.03	2.51	1.88
Merged-chr15-100449640-2	chr15	100449552	100449752	+	629.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-19359.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	13.73	5.03	3.42	5.63	8.18	7.53	6.31	6.17	10.82	11.05	5.53	7.52
Merged-chr15-8167711-1	chr15	8167611	8167811	+	629.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-1395.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	4.04	4.78	1.71	3.62	9.0	3.45	3.99	5.05	4.72	8.03	2.51	6.58
Merged-chr4-129504786-2	chr4	129504677	129504877	+	629.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8804.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	10.5	8.8	7.99	1.61	12.68	23.83	1.33	5.64	9.44	9.04	10.55	3.13
Merged-chr10-117804728-2	chr10	117804649	117804849	+	629.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12044.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	8.08	2.26	3.42	6.44	8.18	6.9	4.32	7.35	7.47	5.02	3.01	4.39
Merged-chr19-10199014-2	chr19	10198900	10199100	+	629.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001271615)	TTS (NM_001271615)	4943.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	7.27	15.09	9.7	5.23	13.5	8.15	8.3	5.19	16.13	14.06	11.05	7.52
Merged-chr5-117485614-2	chr5	117485506	117485706	+	629.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	71604.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	8.08	9.06	9.7	6.44	6.14	3.76	5.31	8.89	3.74	2.01	4.02	5.95
Merged-chr17-43012905-3	chr17	43012801	43013001	+	629.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3654.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	8.48	7.29	3.99	4.42	6.95	8.15	5.98	6.2	14.95	17.07	7.54	4.07
Merged-chr5-90652928-2	chr5	90652824	90653024	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12397.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	11.31	8.3	8.56	8.85	13.91	8.78	3.99	7.23	3.93	10.04	9.04	3.13
Merged-chr8-84601681-1	chr8	84601581	84601781	+	629.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252060, intron 32 of 47)	intron (NM_001252060, intron 32 of 47)	61171.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.42	1.01	0.0	0.0	0.41	0.63	0.0	0.0	8.26	6.53	2.51	10.02
Merged-chr6-114907719-1	chr6	114907619	114907819	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	14102.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	2.42	2.01	1.14	6.84	3.27	6.27	5.31	6.17	3.93	3.01	6.53	4.7
Merged-chr18-82920523-2	chr18	82920432	82920632	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033307)	promoter-TSS (NR_033307)	28.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	7.27	8.3	11.41	1.21	4.91	11.92	6.31	5.33	9.64	6.03	6.03	3.13
Merged-chr15-73441236-1	chr15	73441136	73441336	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18045.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.63	3.02	6.28	8.04	4.91	1.57	4.98	5.55	5.51	4.52	11.05	7.52
Merged-chr17-84235736-1	chr17	84235636	84235836	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-47789.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.02	1.01	0.0	0.8	2.05	6.9	4.65	6.28	4.13	0.5	3.01	0.31
Merged-chr5-43916169-2	chr5	43916081	43916281	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47372.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.63	2.01	1.71	4.02	11.05	14.74	3.65	5.19	5.31	5.02	8.54	2.82
Merged-chr10-87862207-2	chr10	87862106	87862306	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	1095.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.83	3.02	3.42	7.64	3.68	3.45	5.65	4.71	7.87	7.53	6.53	9.08
Merged-chr9-50946555-3	chr9	50946453	50946653	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	62520.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	8.08	7.55	6.85	8.04	5.32	10.35	4.65	9.53	6.88	4.52	12.06	3.76
Merged-chr3-102716001-2	chr3	102715895	102716095	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18775.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	3.23	5.28	7.42	8.85	2.86	6.9	1.66	5.38	8.46	3.01	1.0	2.19
Merged-chr17-70854171-1	chr17	70854071	70854271	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-639.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.27	7.55	3.99	6.84	1.23	6.9	6.64	5.02	5.31	4.52	5.02	6.89
Merged-chr18-24150458-2	chr18	24150372	24150572	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-28653.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	8.48	5.79	2.28	6.44	2.05	4.39	5.31	6.5	3.34	3.01	6.53	2.51
Merged-chr15-100605184-1	chr15	100605084	100605284	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5200.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	12.52	6.04	5.7	6.84	8.18	9.72	8.64	3.84	7.67	2.01	10.05	5.33
Merged-chr11-50206461-3	chr11	50206409	50206609	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290769, intron 4 of 7)	intron (NM_001290769, intron 4 of 7)	4311.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	12.52	6.54	2.85	2.82	5.32	7.84	1.0	2.47	1.97	4.02	3.52	2.19
Merged-chr1-64867898-1	chr1	64867798	64867998	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	88926.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	2.83	4.28	6.85	4.42	2.86	5.96	3.32	5.61	5.51	10.54	8.54	2.82
Merged-chr4-45889715-1	chr4	45889615	45889815	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-588.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	8.48	2.77	5.13	0.0	4.09	8.15	3.99	5.75	5.31	5.52	3.01	5.64
Merged-chr4-55622172-1	chr4	55622072	55622272	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89697.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.27	0.75	3.42	4.83	9.0	6.59	9.3	5.02	2.75	1.0	2.01	2.19
Merged-chr17-78740515-1	chr17	78740415	78740615	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3955.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.23	2.52	2.28	8.04	12.27	5.64	3.65	5.86	2.36	0.0	0.5	0.0
Merged-chr1-43224378-1	chr1	43224278	43224478	+	629.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27617.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	1.62	1.01	0.0	0.0	4.91	5.02	3.32	2.44	16.92	13.05	10.05	4.7
Merged-chr7-65519831-1	chr7	65519731	65519931	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62200.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	4.04	2.77	5.13	3.22	5.73	5.02	1.0	3.81	1.18	4.52	6.03	3.76
Merged-chrX-94150725-1	chrX	94150625	94150825	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-26958.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	4.44	3.52	3.42	0.8	6.14	7.84	1.99	7.29	0.59	2.01	0.0	0.31
Merged-chr12-52541518-2	chr12	52541418	52541618	+	629.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	25441.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	12.92	8.55	10.84	10.46	5.73	5.64	1.99	10.51	23.01	4.52	10.05	4.7
Merged-chr1-58773484-2	chr1	58773389	58773589	+	629.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21885.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	4.85	6.79	3.42	8.45	11.05	11.92	7.31	5.13	7.67	3.51	6.53	6.89
Merged-chr3-82999237-2	chr3	82999142	82999342	+	629.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8482.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	2.83	4.53	7.99	6.03	1.23	5.96	2.99	7.82	6.88	12.55	6.53	8.46
Merged-chr16-85050587-2	chr16	85050484	85050684	+	629.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	78373.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	9.29	4.53	11.98	4.02	4.5	7.84	4.65	10.4	5.31	11.55	15.07	8.77
Merged-chr14-93235597-1	chr14	93235497	93235697	+	629.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271800, intron 3 of 3)	intron (NM_001271800, intron 3 of 3)	655072.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	0.5	0.0	0.8	7.77	6.59	5.31	14.5	1.18	0.0	0.0	3.13
Merged-chr10-128590393-3	chr10	128590284	128590484	+	629.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-883.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	4.44	3.52	6.28	10.05	9.0	5.96	8.64	5.33	6.88	5.02	8.54	10.96
Merged-chr1-156043220-1	chr1	156043120	156043320	+	629.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	2359.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	12.52	3.27	5.13	2.82	3.27	5.33	1.66	3.84	9.64	9.54	10.05	7.52
Merged-chr3-69658399-3	chr3	69658302	69658502	+	629.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-59442.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	2.83	8.8	2.28	13.67	10.23	6.9	8.64	5.16	6.88	6.53	13.57	9.08
Merged-chr1-138165639-1	chr1	138165539	138165739	+	629.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	9487.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.06	2.26	3.42	0.0	0.82	4.7	5.31	4.71	3.54	4.02	0.5	6.58
Merged-chr4-137844966-1	chr4	137844866	137845066	+	629.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17271.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.23	6.79	1.14	6.03	6.95	5.96	4.65	3.76	6.29	3.01	4.52	1.57
Merged-chr1-173753593-2	chr1	173753481	173753681	+	629.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008329, intron 5 of 8)	intron (NM_008329, intron 5 of 8)	-11772.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0.0	0.25	0.0	0.0	8.59	4.08	7.31	5.41	9.05	10.54	8.04	5.33
Merged-chr10-96364011-2	chr10	96363906	96364106	+	629.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137799.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.23	6.04	9.13	10.05	6.14	5.33	3.32	10.82	11.21	12.05	9.55	8.77
Merged-chr8-13992681-2	chr8	13992580	13992780	+	629.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131137, intron 1 of 2)	intron (NR_131137, intron 1 of 2)	-6260.0	NR_131136	546036.0	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm45519|Gm845	predicted gene 5907	ncRNA	10.5	5.53	17.11	8.85	0.0	10.03	1.99	6.34	7.47	1.51	12.06	5.33
Merged-chr2-124615088-2	chr2	124614992	124615192	+	629.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	4796.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.46	4.02	3.99	9.65	6.95	10.66	6.31	5.83	5.51	6.53	6.03	4.07
Merged-chr8-86757475-3	chr8	86757292	86757492	+	629.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11386.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	1.62	1.76	7.42	1.61	1.23	2.51	6.64	0.64	2.95	3.51	7.54	3.13
Merged-chr5-137864185-3	chr5	137864101	137864301	+	629.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6152.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	10.5	10.56	7.99	7.64	12.27	8.78	6.64	3.48	10.82	9.54	11.56	0.63
Merged-chr13-80899877-2	chr13	80899784	80899984	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13789.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	2.02	4.28	0.0	1.61	5.32	3.14	6.64	5.64	6.29	4.02	10.05	6.27
Merged-chr19-42004639-1	chr19	42004539	42004739	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	MTC|LTR|ERVL-MaLR	22876.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	10.5	5.79	7.99	6.44	4.5	5.96	4.98	4.74	5.11	3.51	6.03	8.14
Merged-chr1-171238658-1	chr1	171238558	171238758	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153064, intron 5 of 12)	intron (NM_153064, intron 5 of 12)	-4309.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	4.85	5.28	0.0	3.22	8.59	5.02	3.99	3.06	12.98	9.04	8.54	3.13
Merged-chr9-62844983-1	chr9	62844883	62845083	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033175, intron 2 of 6)	intron (NM_001033175, intron 2 of 6)	6196.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	1.62	3.52	6.85	8.85	5.32	2.82	5.65	5.55	3.34	3.01	11.56	6.89
Merged-chr9-118716481-1	chr9	118716381	118716581	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	4789.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.42	1.26	5.7	4.42	2.86	5.33	5.31	5.52	2.36	1.0	5.02	4.39
Merged-chr14-33146539-1	chr14	33146439	33146639	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 8 of 58)	intron (NM_001146022, intron 8 of 58)	38527.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	7.27	2.26	3.42	5.23	6.55	4.7	4.32	7.91	11.01	6.53	2.51	4.39
Merged-chr5-72984223-1	chr5	72984123	72984323	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22681.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	2.02	2.01	2.28	0.8	11.05	3.14	1.99	5.61	5.9	4.02	4.02	2.51
Merged-chr1-156458780-1	chr1	156458680	156458880	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	15548.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.04	3.52	3.99	10.46	4.91	3.45	4.98	6.67	1.77	6.03	3.01	2.82
Merged-chr2-180704218-1	chr2	180704118	180704318	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-2116.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.65	5.53	7.42	4.42	4.09	9.72	2.66	5.5	5.31	4.52	7.03	5.33
Merged-chr15-84983185-1	chr15	84983085	84983285	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	4786.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.04	2.77	9.13	2.82	2.05	6.27	4.98	1.43	2.95	1.51	0.0	3.13
Merged-chr4-109207675-1	chr4	109207575	109207775	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5403.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	6.46	6.29	10.27	5.63	2.45	5.64	1.99	6.31	9.64	3.51	5.02	2.51
Merged-chr13-29634410-1	chr13	29634310	29634510	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131896, intron 8 of 16)	L1MB3|LINE|L1	221263.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	5.65	3.02	5.7	10.46	4.5	4.08	5.31	8.47	1.97	8.03	7.03	2.51
Merged-chr17-37028350-1	chr17	37028250	37028450	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4952.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	5.65	4.28	4.56	9.25	6.95	4.08	3.32	6.53	5.31	6.53	8.54	4.07
Merged-chr10-84110786-1	chr10	84110686	84110886	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10089.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	2.42	4.02	4.56	2.41	5.73	5.02	4.32	7.23	9.05	1.51	1.0	6.27
Merged-chr12-21508680-1	chr12	21508580	21508780	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-91244.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	7.67	6.79	14.83	3.62	5.73	8.78	4.98	6.36	0.2	0.0	0.0	0.0
Merged-chr10-13823305-1	chr10	13823205	13823405	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 2 of 5)	intron (NM_025446, intron 2 of 5)	45652.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	3.23	2.52	2.28	4.02	6.14	2.51	4.65	5.61	4.33	6.03	6.03	1.88
Merged-chr14-47626995-1	chr14	47626895	47627095	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-22316.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	6.06	5.79	9.13	4.83	5.73	7.53	1.66	6.31	1.77	1.51	5.02	3.13
Merged-chr12-111149711-1	chr12	111149611	111149811	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16659.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.81	2.52	0.0	2.41	2.86	5.64	1.99	4.68	10.42	5.02	3.01	6.27
Merged-chr8-71741943-1	chr8	71741843	71742043	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16262.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.0	1.76	0.0	1.21	10.23	1.57	3.65	4.65	0.59	4.02	4.02	0.94
Merged-chr2-14277742-1	chr2	14277642	14277842	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 10 of 29)	RLTR51A_Mm|LTR|ERVK?	16739.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	3.63	0.5	3.42	1.61	0.82	0.0	3.65	4.57	3.15	1.51	3.01	1.57
Merged-chr18-36509486-3	chr18	36509390	36509590	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	6315.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	9.69	6.79	1.71	4.02	9.0	18.19	2.66	4.65	10.62	11.05	1.0	1.25
Merged-chr5-127615072-1	chr5	127614972	127615172	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	2320.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	4.85	4.02	1.14	2.82	3.68	4.39	5.98	5.8	1.18	6.53	8.04	5.33
Merged-chr1-180195407-1	chr1	180195307	180195507	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	613.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	3.23	4.78	2.85	3.62	5.73	3.76	4.98	3.45	3.93	3.01	6.03	4.7
Merged-chr14-120434359-1	chr14	120434259	120434459	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.65	10.06	3.99	3.22	4.09	9.72	12.62	4.88	5.51	8.03	4.52	2.19
Merged-chr8-70621284-1	chr8	70621184	70621384	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_153074)	TTS (NM_153074)	4440.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	3.63	1.76	5.13	2.82	2.45	5.33	1.33	5.1	4.52	3.51	3.01	4.39
Merged-chr6-85433676-2	chr6	85433544	85433744	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	1668.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0.81	2.26	5.13	4.83	2.45	4.39	1.66	3.67	8.26	6.53	8.54	8.14
Merged-chr6-97805963-1	chr6	97805863	97806063	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1095.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.65	6.54	2.28	2.01	9.82	15.99	5.31	4.07	3.74	6.53	5.53	6.27
Merged-chr9-110535302-1	chr9	110535202	110535402	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081340, intron 1 of 20)	intron (NM_001081340, intron 1 of 20)	2705.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	2.42	2.52	9.13	4.02	4.5	8.47	1.33	6.0	4.72	5.52	1.51	4.39
Merged-chr7-75910179-1	chr7	75910079	75910279	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61841.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.04	7.29	4.56	0.4	3.27	1.57	3.65	4.37	11.6	9.54	12.56	6.58
Merged-chr13-55063458-1	chr13	55063358	55063558	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121592, intron 6 of 13)	intron (NR_121592, intron 6 of 13)	30948.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	7.27	2.52	3.42	3.62	6.14	4.7	5.98	12.17	5.51	4.02	6.53	3.76
Merged-chr9-44882788-1	chr9	44882688	44882888	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1514.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	8.88	5.53	3.42	0.8	2.86	8.15	3.99	3.53	6.69	7.53	7.03	2.82
Merged-chr1-182991106-1	chr1	182991006	182991206	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36318.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.85	4.28	7.99	3.22	6.55	9.72	3.32	5.19	9.44	2.01	15.07	3.45
Merged-chr15-83433479-2	chr15	83433380	83433580	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-630.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	3.23	8.05	3.42	4.83	2.45	5.02	5.31	4.68	5.9	6.03	3.01	1.25
Merged-chr6-13599949-1	chr6	13599849	13600049	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	8149.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	6.86	6.29	0.0	4.83	0.82	7.53	4.32	4.91	10.03	8.54	7.54	3.76
Merged-chr4-8648854-1	chr4	8648754	8648954	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41552.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.86	3.27	7.42	6.84	7.36	1.88	3.65	6.25	4.52	4.02	9.55	8.14
Merged-chr2-148533904-2	chr2	148533805	148534005	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90370.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.46	3.27	4.56	4.02	2.86	9.41	8.64	4.21	11.8	9.04	11.05	3.13
Merged-chr3-87372254-1	chr3	87372154	87372354	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4133.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	1.62	1.26	0.57	4.02	1.23	1.25	0.0	1.57	2.75	3.01	1.51	2.19
Merged-chr6-116135806-1	chr6	116135706	116135906	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57568.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	12.52	2.77	9.13	7.24	13.91	5.64	3.99	6.9	8.46	5.02	6.03	2.51
Merged-chr13-6029894-1	chr13	6029794	6029994	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	168405.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.25	4.02	0.0	1.61	7.77	3.14	1.66	5.94	4.13	2.01	3.01	3.45
Merged-chr5-98186329-1	chr5	98186229	98186429	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153823)	promoter-TSS (NR_153823)	-345.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	1.21	2.26	2.85	0.8	6.55	2.82	0.33	5.8	1.97	4.02	2.01	1.57
Merged-chr1-164059517-1	chr1	164059417	164059617	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2559.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	1.62	5.53	7.42	1.21	5.73	2.51	2.33	2.19	10.82	5.52	15.07	6.89
Merged-chr11-51356579-1	chr11	51356479	51356679	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	66659.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	12.92	4.78	9.13	5.23	5.32	4.08	1.0	10.49	9.64	4.02	12.06	4.7
Merged-chr13-115089429-1	chr13	115089329	115089529	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134058, exon 1 of 2)	exon (NM_134058, exon 1 of 2)	729.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	3.63	7.29	2.28	7.64	10.64	6.27	9.63	5.83	7.47	3.51	6.53	4.7
Merged-chr6-145800452-1	chr6	145800352	145800552	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-7931.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.21	1.26	3.42	2.01	0.82	1.88	0.0	5.75	2.16	0.5	2.51	0.94
Merged-chr3-82759105-1	chr3	82759005	82759205	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117378.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0.0	0.5	0.0	0.0	4.5	0.63	4.98	7.07	0.79	1.0	2.51	0.0
Merged-chr17-66449812-1	chr17	66449712	66449912	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001114098)	promoter-TSS (NM_001114098)	-62.0	NM_001114098	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	4.85	6.79	5.7	4.02	3.27	6.27	3.32	5.83	5.9	4.52	1.0	3.76
Merged-chr2-173227724-1	chr2	173227624	173227824	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_022995, exon 4 of 4)	3' UTR (NM_022995, exon 4 of 4)	-8802.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.81	2.77	1.14	2.01	3.68	4.39	3.32	3.2	9.83	4.52	9.55	6.27
Merged-chr4-127168817-1	chr4	127168717	127168917	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-387.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	5.25	6.04	7.42	3.22	4.09	2.51	2.33	5.5	4.52	6.03	1.0	3.76
Merged-chr2-35480260-2	chr2	35480167	35480367	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18818.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	1.21	6.04	5.13	12.47	5.32	0.63	5.98	6.03	2.36	2.01	5.53	6.58
Merged-chr19-46452646-2	chr19	46452547	46452747	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 6 of 11)	intron (NM_001025391, intron 6 of 11)	-49001.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	9.69	6.54	4.56	6.03	2.86	11.6	3.99	5.33	7.47	1.0	5.53	2.82
Merged-chr1-178492685-1	chr1	178492585	178492785	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36440.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	3.63	1.01	1.14	1.61	5.32	2.51	6.64	5.78	2.75	8.03	6.03	4.07
Merged-chr1-53888151-1	chr1	53888051	53888251	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	38727.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	2.42	0.75	1.14	0.0	4.5	7.84	8.97	2.02	3.15	2.01	4.02	1.88
Merged-chr10-93549271-1	chr10	93549171	93549371	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175488, intron 3 of 15)	intron (NM_175488, intron 3 of 15)	-5610.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	6.06	5.79	13.12	7.24	7.77	8.78	11.96	5.72	12.0	5.02	7.03	6.27
Merged-chr10-80179583-1	chr10	80179483	80179683	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_007909, exon 1 of 4)	5' UTR (NM_007909, exon 1 of 4)	101.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	2.42	3.27	0.57	0.4	7.77	3.14	3.99	4.77	3.93	5.02	3.52	3.13
Merged-chr3-59204341-1	chr3	59204241	59204441	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	6541.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	2.83	2.01	1.14	4.42	4.91	8.47	5.31	2.1	4.52	1.51	3.01	0.94
Merged-chr18-26908395-1	chr18	26908295	26908495	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1154238.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.21	2.01	7.99	5.63	0.0	3.76	5.31	7.12	7.67	8.54	2.51	3.13
Merged-chr6-128662393-1	chr6	128662293	128662493	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	8.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	2.83	4.02	4.56	4.42	6.95	3.76	4.98	7.21	1.18	5.02	2.01	3.13
Merged-chr15-99055873-1	chr15	99055773	99055973	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163589, intron 1 of 8)	intron (NM_001163589, intron 1 of 8)	699.0	NM_001163589	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	4.04	4.28	1.14	5.23	2.86	4.39	0.33	3.76	5.31	3.01	3.52	5.64
Merged-chr14-30256000-1	chr14	30255900	30256100	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	97486.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.83	2.77	0.57	7.64	5.32	5.96	3.65	7.23	9.44	6.53	4.02	5.33
Merged-chr8-105554322-1	chr8	105554222	105554422	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	11742.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	9.69	5.03	2.28	1.21	2.45	10.03	2.99	4.04	10.42	4.02	3.01	8.14
Merged-chr4-138013924-1	chr4	138013824	138014024	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16099.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	9.69	6.54	15.4	6.84	7.77	4.08	5.98	8.75	0.79	2.01	0.5	1.57
Merged-chr1-53777463-1	chr1	53777363	53777563	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	7752.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	1.51	1.14	0.8	1.23	2.51	6.98	5.33	5.9	3.51	5.02	1.88
Merged-chr11-119084106-2	chr11	119084031	119084231	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007625, intron 3 of 4)	intron (NM_007625, intron 3 of 4)	2106.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	5.25	9.56	7.42	1.21	1.23	6.27	1.0	4.82	5.31	8.03	3.01	4.39
Merged-chr5-43842109-1	chr5	43842009	43842209	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23216.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	5.25	3.52	1.14	6.03	2.86	5.96	4.32	4.07	9.05	5.52	10.55	3.76
Merged-chr1-184734475-3	chr1	184734339	184734539	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1946.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	3.23	7.55	9.13	4.83	11.05	4.39	5.98	5.16	7.28	4.52	8.54	7.52
Merged-chr8-70942205-1	chr8	70942105	70942305	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	10890.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	0.81	2.52	0.0	4.02	3.27	5.02	2.99	6.48	2.75	1.0	0.5	5.33
Merged-chr15-80792738-1	chr15	80792638	80792838	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144812, intron 4 of 24)	Lx8|LINE|L1	-5872.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.81	2.52	10.27	4.02	9.82	6.27	1.33	6.93	8.46	4.52	6.53	2.19
Merged-chr16-55818259-5	chr16	55818223	55818423	+	628.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159394, exon 5 of 12)	exon (NM_001159394, exon 5 of 12)	3815.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.86	5.03	10.84	1.61	6.14	9.09	1.33	2.64	6.88	11.05	4.02	1.57
Merged-chr4-103340459-3	chr4	103340369	103340569	+	628.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	26623.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	7.67	10.06	17.68	4.83	8.18	8.78	1.33	6.45	14.95	6.03	9.55	6.89
Merged-chrX-37113473-2	chrX	37113358	37113558	+	628.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3136.0	NM_026573	68134.0	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	2.42	3.77	4.56	4.02	6.55	4.39	1.99	7.01	8.26	10.54	10.55	5.33
Merged-chr6-147116793-1	chr6	147116693	147116893	+	628.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25718.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	7.27	2.52	4.56	5.23	4.09	3.45	3.99	3.93	9.05	7.53	13.57	7.21
Merged-chr5-151108734-1	chr5	151108634	151108834	+	628.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	81459.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.04	3.02	5.7	1.61	6.55	5.96	4.98	5.5	4.72	2.51	8.04	6.58
Merged-chr2-172392377-1	chr2	172392277	172392477	+	628.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1417.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	6.86	2.52	1.71	1.21	4.5	6.27	7.64	5.38	2.75	1.51	0.5	3.13
Merged-chr3-88620690-2	chr3	88620565	88620765	+	628.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-441.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.65	5.28	6.85	2.41	3.27	12.23	6.31	4.43	11.8	17.07	4.02	7.21
Merged-chr1-151585848-2	chr1	151585752	151585952	+	628.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	14479.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	3.63	3.77	4.56	6.84	9.82	6.59	1.99	6.22	7.87	13.05	14.07	7.21
Merged-chr11-61866508-2	chr11	61866414	61866614	+	628.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11422.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	11.31	5.79	7.42	9.65	11.45	4.39	5.98	7.77	5.31	7.53	8.04	6.89
Merged-chr8-48009223-1	chr8	48009123	48009323	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-18672.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	1.62	0.5	0.0	1.61	3.68	6.27	7.64	4.91	1.18	2.51	5.53	0.0
Merged-chr4-111687183-2	chr4	111687081	111687281	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32829.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	10.5	4.28	7.99	6.03	6.55	2.2	3.99	7.49	4.72	3.51	10.05	5.01
Merged-chr13-63240385-2	chr13	63240279	63240479	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	350.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.86	7.04	6.85	4.42	8.59	7.53	5.31	5.16	10.03	4.52	6.53	6.89
Merged-chr5-120711640-1	chr5	120711540	120711740	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008052)	promoter-TSS (NM_008052)	29.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	7.27	11.07	3.42	4.42	4.91	6.9	4.65	4.29	3.54	8.54	5.02	1.88
Merged-chr4-107080418-2	chr4	107080338	107080538	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346552, intron 5 of 6)	intron (NM_001346552, intron 5 of 6)	13450.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	2.02	6.29	4.56	1.61	3.27	4.39	4.98	5.38	6.29	2.01	9.55	9.71
Merged-chr19-12433850-2	chr19	12433734	12433934	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	5929.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	12.92	5.53	9.13	3.22	3.68	6.27	2.66	5.33	6.1	2.51	3.01	4.39
Merged-chr6-86586192-2	chr6	86586103	86586303	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41971.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	4.02	0.0	1.61	8.18	9.41	7.64	4.32	12.39	9.04	6.03	4.39
Merged-chr11-77028782-2	chr11	77028684	77028884	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	30187.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	4.85	7.04	3.42	6.84	4.5	7.84	5.31	5.64	3.15	3.01	4.02	5.95
Merged-chr9-54547712-2	chr9	54547631	54547831	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019686, intron 4 of 5)	intron (NM_019686, intron 4 of 5)	8747.0	NM_173778	244885.0	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding	4.85	1.51	3.42	2.41	2.86	5.02	3.32	5.61	10.82	3.01	11.05	1.57
Merged-chr2-30691557-1	chr2	30691457	30691657	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13546.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	6.06	3.27	1.71	2.01	3.68	4.7	4.65	4.91	5.11	1.0	4.52	3.76
Merged-chr15-98153850-3	chr15	98153750	98153950	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-8148.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	5.25	6.54	6.85	5.23	2.86	9.09	10.96	3.39	11.41	3.51	10.05	6.27
Merged-chr2-151995004-2	chr2	151994896	151995096	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1515.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	9.29	6.79	0.57	3.62	9.41	6.9	4.32	6.36	5.9	10.04	7.03	5.33
Merged-chr17-17449563-1	chr17	17449463	17449663	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46877.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	8.08	4.78	1.14	4.83	6.14	6.27	2.66	5.38	9.44	4.52	8.54	2.51
Merged-chr17-3077894-1	chr17	3077794	3077994	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003519, intron 4 of 7)	intron (NR_003519, intron 4 of 7)	6289.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	5.25	6.54	6.28	6.84	4.09	10.03	7.97	4.99	0.59	2.01	4.02	0.0
Merged-chr13-101654996-1	chr13	101654896	101655096	+	628.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37634.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.85	3.02	1.14	3.22	4.5	7.84	1.99	3.95	6.88	11.05	9.55	1.57
Merged-chr16-5406937-1	chr16	5406837	5407037	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-150981.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	6.86	5.03	8.56	6.44	12.27	5.02	2.33	5.33	4.92	2.01	4.52	0.63
Merged-chr15-78583554-2	chr15	78583456	78583656	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-1967.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	8.88	3.77	7.99	9.65	6.14	8.15	5.65	5.58	0.39	2.01	1.51	1.25
Merged-chr6-15748057-1	chr6	15747957	15748157	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	27396.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.23	4.28	1.71	1.21	6.14	5.64	2.33	4.77	5.11	6.03	1.51	2.51
Merged-chr12-69403029-1	chr12	69402929	69403129	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	30879.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	10.9	7.55	9.13	2.01	7.36	19.13	5.65	1.35	5.9	9.04	8.54	1.57
Merged-chr18-9487582-1	chr18	9487482	9487682	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37428.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.21	0.5	1.14	1.21	0.41	6.27	4.65	6.28	1.18	7.03	1.51	1.88
Merged-chr8-39695527-2	chr8	39695443	39695643	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-52865.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	7.27	4.53	5.13	10.86	4.09	4.39	5.31	7.99	6.69	2.51	12.06	1.57
Merged-chrX-99658259-1	chrX	99658159	99658359	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-162810.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	3.23	3.02	5.13	2.82	9.41	7.84	5.31	4.93	7.28	4.02	10.05	5.64
Merged-chr8-104111919-1	chr8	104111819	104112019	+	628.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-6046.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.23	5.03	2.28	4.83	4.91	6.27	6.31	3.2	9.05	9.04	8.04	0.94
Merged-chr3-108886302-2	chr3	108886212	108886412	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	3696.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.44	1.51	6.28	9.25	7.36	7.53	2.66	4.23	7.87	5.52	12.06	4.07
Merged-chr3-138198329-3	chr3	138198207	138198407	+	628.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11594.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	9.69	5.03	9.7	9.65	1.23	2.82	2.33	12.73	13.77	5.02	8.54	12.53
Merged-chr18-35094136-3	chr18	35094037	35094237	+	628.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24775.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	9.69	6.29	10.84	5.63	2.86	1.88	4.65	5.13	8.85	5.02	11.56	7.52
Merged-chr15-78330129-2	chr15	78330003	78330203	+	628.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	B4A|SINE|B4	4113.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	6.06	7.55	14.83	3.62	3.27	5.64	4.65	4.51	5.7	4.02	0.5	1.57
Merged-chr10-24103483-3	chr10	24103371	24103571	+	628.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1520.0	NM_001010840	494546.0	Mm.379739	NM_001010840	ENSMUSG00000100004	Taar8c	taR-8c	trace amine-associated receptor 8C	protein-coding	5.65	3.27	11.41	13.27	4.5	7.53	9.63	6.17	11.21	5.52	10.05	8.14
Merged-chr11-60912579-2	chr11	60912496	60912696	+	628.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025294, intron 1 of 2)	intron (NM_025294, intron 1 of 2)	1196.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	5.25	4.02	7.42	3.62	5.73	1.25	5.31	6.84	5.9	9.04	5.02	8.14
Merged-chr5-32611088-2	chr5	32610986	32611186	+	628.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-85.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	7.67	3.77	5.7	5.63	3.27	10.98	6.31	8.72	9.44	2.01	6.03	7.21
Merged-chr11-106122150-3	chr11	106122055	106122255	+	628.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	37253.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	8.88	7.29	4.56	9.65	10.23	6.9	8.64	6.7	10.42	12.05	15.58	5.95
Merged-chr6-145304688-1	chr6	145304588	145304788	+	628.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54136.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	2.42	1.01	2.28	0.0	0.0	6.27	0.33	3.76	10.62	11.55	7.03	7.52
Merged-chr17-70683997-2	chr17	70683919	70684119	+	628.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	122272.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	9.29	5.53	2.28	4.83	5.73	6.27	0.66	7.29	4.13	6.53	6.53	7.21
Merged-chr16-31124480-2	chr16	31124370	31124570	+	628.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030138, intron 10 of 22)	intron (NM_030138, intron 10 of 22)	-43038.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.04	8.8	6.85	10.05	7.36	5.33	6.98	4.21	3.54	3.51	4.02	1.57
Merged-chr10-6418373-2	chr10	6418246	6418446	+	628.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-340247.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	8.88	6.79	13.69	5.63	9.0	6.27	9.63	2.21	0.0	0.0	0.0	0.0
Merged-chr6-54781137-2	chr6	54781040	54781240	+	628.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-35776.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	5.25	7.8	5.7	4.83	8.18	7.84	4.65	6.98	7.67	9.54	7.54	12.84
Merged-chr15-66804696-1	chr15	66804596	66804796	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27133.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.86	0.0	3.42	2.41	3.68	1.88	8.3	6.08	4.13	3.01	3.01	3.13
Merged-chr10-7780211-1	chr10	7780111	7780311	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145418, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	706.0	NM_145418	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.81	2.77	1.71	2.01	2.45	2.2	7.31	5.07	8.06	4.02	6.53	2.82
Merged-chr1-183398075-1	chr1	183397975	183398175	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277957, intron 4 of 10)	intron (NM_001277957, intron 4 of 10)	9090.0	NM_001277958	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	0.0	0.25	0.0	1.21	7.36	0.94	2.33	5.86	3.15	1.51	11.05	0.94
Merged-chr1-130373911-1	chr1	130373811	130374011	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48913.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	2.02	3.02	6.85	2.82	5.73	1.57	2.66	6.39	1.57	1.0	11.56	3.13
Merged-chr4-101070965-1	chr4	101070865	101071065	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183024, intron 1 of 11)	intron (NM_183024, intron 1 of 11)	1927.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.81	1.51	10.27	2.82	1.23	2.51	3.99	6.95	3.15	4.52	1.51	3.45
Merged-chrX-35956435-1	chrX	35956335	35956535	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 6 of 52)	intron (NM_001009947, intron 6 of 52)	67603.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	6.46	2.77	6.85	3.62	14.73	5.33	5.65	5.1	6.69	4.52	6.03	3.13
Merged-chr4-139093040-1	chr4	139092940	139093140	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008675)	promoter-TSS (NM_008675)	-70.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	5.25	4.53	4.56	0.8	8.18	4.7	1.66	5.72	3.15	1.51	7.03	5.01
Merged-chr2-45275049-1	chr2	45274949	45275149	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-157607.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	9.69	6.79	20.54	7.24	5.73	3.14	6.64	5.3	3.74	4.02	1.0	0.94
Merged-chr6-43425206-1	chr6	43425106	43425306	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311111, intron 6 of 7)	intron (NM_001311111, intron 6 of 7)	-17223.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	1.62	0.75	4.56	3.62	1.23	1.88	3.32	4.88	3.74	2.51	5.53	6.58
Merged-chr8-46070317-2	chr8	46070218	46070418	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207213, intron 5 of 17)	B1_Mus2|SINE|Alu	53828.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	4.04	3.52	9.13	9.25	0.0	1.88	6.31	6.17	4.72	4.02	5.02	5.33
Merged-chr4-75063573-1	chr4	75063473	75063673	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	214719.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	8.88	8.8	1.14	2.41	0.0	3.14	1.0	4.15	3.15	13.05	4.02	2.19
Merged-chr11-115513733-1	chr11	115513633	115513833	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008258, intron 1 of 4)	CpG	660.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	1.21	5.03	3.42	3.62	3.27	5.33	4.98	5.38	6.29	5.52	11.56	6.58
Merged-chr4-126156238-1	chr4	126156138	126156338	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	6427.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	2.02	3.27	5.13	0.4	4.5	1.25	5.65	3.14	7.87	5.02	2.01	5.01
Merged-chr4-54794065-1	chr4	54793965	54794165	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-153880.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.42	1.76	0.0	8.04	4.91	4.39	4.98	5.36	0.2	0.0	0.5	1.25
Merged-chr3-138488755-1	chr3	138488655	138488855	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	627.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	7.67	2.77	3.42	1.61	4.09	10.35	8.97	4.23	6.29	5.52	3.52	3.13
Merged-chr7-144583875-2	chr7	144583789	144583989	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1453.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	13.33	6.79	6.28	3.62	4.09	9.09	4.32	3.93	9.83	4.52	5.02	6.27
Merged-chr8-27192414-1	chr8	27192314	27192514	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10133.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	4.44	3.27	3.99	5.63	4.91	9.41	1.33	4.99	8.65	6.03	9.55	3.76
Merged-chr18-84787946-2	chr18	84787838	84788038	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	43871.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	5.65	3.27	13.12	3.22	6.95	8.78	3.32	5.1	6.88	3.01	12.06	6.58
Merged-chr2-103719096-1	chr2	103718996	103719196	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178890)	TTS (NM_178890)	42174.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	2.42	9.06	6.28	4.83	5.32	4.39	3.99	7.15	9.64	5.52	15.07	5.95
Merged-chr7-53496050-1	chr7	53495950	53496150	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	395839.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.81	0.5	1.14	0.0	1.23	3.76	2.99	15.5	10.62	7.03	10.55	3.13
Merged-chr16-91404796-1	chr16	91404696	91404896	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_010509, exon 9 of 9)	3' UTR (NM_010509, exon 9 of 9)	-1439.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.65	5.28	7.99	0.0	3.68	4.39	0.33	2.05	7.87	5.02	2.51	0.94
Merged-chr9-70385315-1	chr9	70385215	70385415	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	20438.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	10.5	5.53	12.55	4.02	5.73	5.64	3.65	6.98	6.29	8.03	5.02	6.58
Merged-chr4-134551879-1	chr4	134551779	134551979	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029100, intron 1 of 11)	intron (NM_029100, intron 1 of 11)	287.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	5.25	4.53	3.99	6.44	3.27	7.21	5.65	5.16	2.56	4.52	10.55	6.89
Merged-chrX-144236476-1	chrX	144236376	144236576	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61314.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.81	2.26	1.14	1.61	7.36	2.51	2.99	5.83	1.38	5.52	3.01	3.45
Merged-chr12-99326212-1	chr12	99326112	99326312	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	123862.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	2.83	5.28	9.13	12.87	2.86	2.82	3.32	7.32	6.88	3.01	6.53	2.19
Merged-chr12-38864513-1	chr12	38864413	38864613	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	80802.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.85	6.04	5.7	11.66	3.68	8.78	7.64	6.81	9.44	5.02	8.04	5.01
Merged-chr17-56583243-1	chr17	56583143	56583343	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029979, intron 1 of 20)	intron (NM_001029979, intron 1 of 20)	1342.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	6.46	4.28	4.56	3.22	7.77	4.7	1.66	6.11	5.51	3.51	6.03	4.39
Merged-chr15-88760710-1	chr15	88760610	88760810	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181412, intron 2 of 2)	B2_Mm1a|SINE|B2	8999.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	8.08	7.55	2.85	3.62	5.73	0.63	3.32	2.36	9.83	6.03	5.53	13.47
Merged-chr8-71433120-1	chr8	71433020	71433220	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	27108.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	20.19	24.4	22.25	21.32	0.0	0.0	0.0	0.0	24.19	22.09	12.06	16.92
Merged-chr5-72250386-1	chr5	72250286	72250486	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	47043.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	1.62	2.26	1.14	0.8	6.95	6.59	5.65	3.84	6.29	7.03	11.05	5.01
Merged-chr5-103693406-1	chr5	103693306	103693506	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37674.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	8.08	4.53	3.42	2.41	4.09	5.33	3.99	7.07	4.52	3.01	3.52	1.88
Merged-chr1-80823333-1	chr1	80823233	80823433	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64780.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.42	11.07	1.14	1.21	1.64	8.47	4.32	1.71	10.62	10.54	4.52	0.63
Merged-chr15-78328219-1	chr15	78328119	78328319	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2229.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.44	3.02	3.42	0.8	0.82	2.51	4.98	5.27	0.79	0.0	0.0	1.88
Merged-chr12-109530108-1	chr12	109530008	109530208	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10888.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	4.85	4.02	0.0	4.83	6.14	3.14	4.32	3.2	9.44	9.04	7.03	2.19
Merged-chr15-64058433-1	chr15	64058333	64058533	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1331.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.02	3.77	1.14	2.01	6.55	4.08	1.99	2.36	2.75	4.52	5.02	1.88
Merged-chr13-52650761-1	chr13	52650661	52650861	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	53879.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.63	5.53	10.84	1.61	6.95	1.88	4.65	2.55	0.98	7.03	5.02	5.01
Merged-chr16-24711090-1	chr16	24710990	24711190	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 7 of 12)	RMER6C|LTR|ERVK	-10765.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.83	2.77	2.28	5.23	2.45	9.72	5.98	1.96	3.15	11.05	6.03	5.33
Merged-chr8-34849048-1	chr8	34848948	34849148	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 18 of 26)	intron (NM_175091, intron 18 of 26)	41438.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.21	3.52	4.56	8.45	7.77	4.7	4.98	11.52	3.74	0.0	2.01	0.94
Merged-chr17-27125381-1	chr17	27125281	27125481	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026063, intron 2 of 3)	intron (NM_026063, intron 2 of 3)	8510.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	7.67	3.27	8.56	8.04	3.27	5.33	1.99	5.41	4.92	4.02	1.0	3.76
Merged-chr11-77214462-1	chr11	77214362	77214562	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1963.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.85	5.79	10.27	4.83	9.0	5.02	3.99	7.21	6.69	11.55	5.02	2.82
Merged-chr15-55500228-1	chr15	55500128	55500328	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 44 of 47)	intron (NM_181277, intron 44 of 47)	57084.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	6.86	2.52	3.42	2.41	6.95	2.82	4.65	5.02	3.93	1.51	2.51	2.51
Merged-chr15-98799627-1	chr15	98799527	98799727	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8298.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	3.23	3.02	1.14	1.21	3.27	9.72	5.65	3.03	10.03	8.54	8.54	3.45
Merged-chr8-111731509-1	chr8	111731409	111731609	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	627.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.4	2.52	1.14	3.22	1.23	5.96	5.31	4.51	4.92	4.02	2.51	1.25
Merged-chr14-77905997-2	chr14	77905909	77906109	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1770.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	2.02	0.25	6.28	2.41	8.18	2.2	1.66	6.11	9.05	15.57	10.55	5.01
Merged-chr16-91376325-1	chr16	91376225	91376425	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	3542.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.81	2.52	7.42	1.61	8.59	2.51	5.31	4.65	6.69	1.0	7.03	6.27
Merged-chr15-59079134-1	chr15	59079034	59079234	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	2892.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.85	1.76	7.42	3.22	9.0	6.59	1.66	5.16	6.49	8.54	1.51	7.83
Merged-chr4-128613401-1	chr4	128613301	128613501	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3303.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	9.69	8.8	3.42	2.41	1.64	3.76	2.99	2.41	8.85	4.02	7.03	2.82
Merged-chr5-117577167-1	chr5	117577067	117577267	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	163165.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.81	3.02	0.0	0.8	0.0	0.0	0.0	0.03	5.7	3.01	12.06	11.28
Merged-chr14-47396456-1	chr14	47396356	47396556	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144553, intron 13 of 18)	intron (NM_144553, intron 13 of 18)	21951.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	5.65	4.28	2.28	2.01	10.64	9.41	1.33	5.33	4.33	1.0	4.02	4.07
Merged-chr10-5841582-1	chr10	5841482	5841682	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161822, intron 4 of 5)	intron (NM_001161822, intron 4 of 5)	-17639.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	2.42	1.76	6.28	2.41	6.95	1.57	1.99	5.72	3.15	4.52	5.02	0.63
Merged-chr10-42842498-1	chr10	42842398	42842598	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18014.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	3.63	4.53	2.28	4.02	5.73	5.64	3.65	4.96	9.05	5.52	4.02	5.33
Merged-chr4-9250853-1	chr4	9250753	9250953	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18440.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.23	3.02	3.42	1.61	3.68	1.88	5.98	4.96	3.54	3.51	10.05	3.76
Merged-chr6-127107590-1	chr6	127107490	127107690	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1962.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	4.04	3.27	5.13	1.21	6.14	1.88	3.32	5.36	1.77	1.51	6.03	9.71
Merged-chr12-21288053-1	chr12	21287953	21288153	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1756.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	3.23	4.28	1.14	3.62	10.64	2.82	2.66	6.48	3.54	4.52	5.53	1.88
Merged-chr5-104943098-1	chr5	104942998	104943198	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	39619.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.81	1.51	0.0	1.61	8.18	4.08	1.0	2.36	5.51	6.53	9.55	2.82
Merged-chr4-11152032-1	chr4	11151932	11152132	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4409.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	1.62	2.01	9.13	1.21	6.95	4.08	2.66	7.32	1.18	1.51	7.54	4.7
Merged-chr2-102685925-1	chr2	102685825	102686025	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-20513.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.81	1.26	4.56	6.44	5.73	0.31	5.31	5.1	3.93	1.51	2.01	2.51
Merged-chr16-31918612-3	chr16	31918504	31918704	+	627.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15247.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	8.88	5.79	2.85	8.04	2.45	6.27	9.63	7.51	9.64	11.05	6.53	8.14
Merged-chr2-141012109-2	chr2	141012019	141012219	+	627.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-340643.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	10.5	6.54	6.85	12.47	6.14	8.47	7.31	5.47	5.31	0.5	6.03	11.28
Merged-chr10-8715870-2	chr10	8715773	8715973	+	627.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	170197.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	9.69	5.79	3.99	6.44	8.18	5.02	5.98	5.75	8.46	5.52	8.04	3.13
Merged-chr7-102394101-3	chr7	102394017	102394217	+	627.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 3 of 11)	ID_B1|SINE|B4	-47578.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	7.27	7.29	10.27	8.04	8.18	5.96	3.65	10.43	8.26	5.52	10.55	3.13
Merged-chr11-62456829-3	chr11	62456745	62456945	+	627.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177229, intron 1 of 8)	CpG	487.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	7.67	8.05	2.85	3.62	9.0	8.47	5.31	4.37	2.75	5.52	5.53	5.95
Merged-chr6-38900920-2	chr6	38900842	38901042	+	627.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18044.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.23	4.78	4.56	7.64	11.45	5.02	5.98	3.84	10.42	5.52	7.03	9.4
Merged-chr4-138856649-2	chr4	138856553	138856753	+	627.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122954, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	6816.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	8.08	5.28	2.28	3.22	4.09	7.53	6.98	6.98	10.03	3.01	5.53	8.46
Merged-chr15-78448415-2	chr15	78448315	78448515	+	627.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19851.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	3.63	3.02	9.13	2.82	10.64	9.09	3.65	3.67	9.83	18.58	15.58	5.01
Merged-chr6-48772180-2	chr6	48772131	48772331	+	627.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_031247	83408.0	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	9.69	3.27	9.7	6.84	8.18	2.51	1.66	4.77	6.88	7.03	7.54	6.58
Merged-chr18-56566191-1	chr18	56566091	56566291	+	627.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	3622.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.4	2.01	3.42	2.41	9.41	4.7	6.64	5.19	4.72	8.03	6.03	6.58
Merged-chr13-29983213-1	chr13	29983113	29983313	+	627.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	1178.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	6.06	4.02	11.41	6.03	4.09	5.33	3.32	4.51	5.9	9.04	7.54	5.64
Merged-chr11-115322500-3	chr11	115322419	115322619	+	627.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362400)	promoter-TSS (NM_001362400)	-11.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	5.25	7.29	3.99	2.82	6.55	10.03	5.65	3.5	9.83	6.03	7.54	8.14
Merged-chr11-98864182-1	chr11	98864082	98864282	+	627.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197940, intron 1 of 7)	intron (NM_197940, intron 1 of 7)	584.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	4.44	8.3	8.56	2.82	6.55	7.53	5.98	4.82	2.75	7.03	5.53	7.83
Merged-chr19-23146789-1	chr19	23146689	23146889	+	627.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	-2642.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.81	4.02	0.0	0.8	5.73	11.29	0.66	2.66	11.41	15.06	9.55	9.4
Merged-chr3-51561833-2	chr3	51561733	51561933	+	627.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033624, intron 1 of 4)	intron (NR_033624, intron 1 of 4)	-1010.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	2.83	8.8	7.99	5.23	10.64	10.98	10.3	3.56	7.67	8.03	4.02	5.64
Merged-chr11-60199894-3	chr11	60199774	60199974	+	627.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105886)	TTS (NR_105886)	743.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	8.08	6.29	3.42	7.24	4.09	14.42	7.97	7.91	8.65	12.05	10.55	6.89
Merged-chr11-97701638-1	chr11	97701538	97701738	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	1.62	2.52	1.14	1.61	5.73	0.94	5.31	3.03	4.13	3.01	5.53	0.63
Merged-chr6-115897644-2	chr6	115897535	115897735	+	627.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167763, intron 14 of 28)	MIRb|SINE|MIR	-34292.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	2.42	8.55	9.7	5.63	4.09	2.51	4.32	7.18	7.47	5.52	7.54	7.52
Merged-chr4-128627140-1	chr4	128627040	128627240	+	627.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-8521.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	1.62	1.51	7.99	0.8	0.0	2.2	0.0	0.0	11.41	9.54	3.01	5.95
Merged-chr10-117837260-1	chr10	117837160	117837360	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	8714.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.25	5.28	4.56	3.62	7.36	12.86	2.99	6.48	6.49	6.53	7.54	5.33
Merged-chr7-127355959-1	chr7	127355859	127356059	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10645.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	5.65	3.02	9.13	2.41	4.09	5.64	6.31	5.38	6.29	2.01	5.53	4.07
Merged-chr12-24980498-2	chr12	24980389	24980589	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 1 of 31)	L1ME1|LINE|L1	5557.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	4.44	1.51	0.57	4.02	2.45	2.51	4.98	5.61	19.08	3.51	11.05	7.52
Merged-chr10-14173631-1	chr10	14173531	14173731	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	207252.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	12.92	5.03	2.85	7.64	6.55	8.47	3.99	4.91	8.85	7.03	11.56	6.58
Merged-chr2-50789401-1	chr2	50789301	50789501	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120283.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.02	2.77	3.42	8.04	4.91	6.27	3.99	4.63	4.72	10.54	7.03	2.51
Merged-chr2-52943455-2	chr2	52943346	52943546	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.25	6.29	1.71	4.83	9.82	7.53	6.64	3.76	9.44	10.04	3.01	7.21
Merged-chr6-72490651-2	chr6	72490542	72490742	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-51084.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	1.62	3.27	2.28	2.41	5.73	7.84	3.32	8.16	9.44	10.04	9.04	8.77
Merged-chr7-120947286-2	chr7	120947190	120947390	+	627.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025298, exon 21 of 21)	3' UTR (NM_025298, exon 21 of 21)	29546.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	5.65	2.26	14.26	10.86	2.86	7.21	3.32	8.64	3.74	5.02	10.55	6.89
Merged-chrX-48435476-1	chrX	48435376	48435576	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	27656.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	6.86	4.28	2.28	2.82	9.0	7.21	1.33	4.26	4.13	10.04	10.55	5.95
Merged-chr7-101857307-1	chr7	101857207	101857407	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303239)	promoter-TSS (NM_001303239)	-117.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	8.48	6.29	2.85	1.61	4.91	5.96	2.66	7.77	6.49	4.02	8.54	4.39
Merged-chr18-61099940-2	chr18	61099846	61100046	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-5626.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.04	7.8	2.85	3.22	6.55	5.96	4.98	7.99	7.08	11.05	8.04	7.83
Merged-chr8-121577960-2	chr8	121577846	121578046	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133765, intron 1 of 8)	intron (NM_133765, intron 1 of 8)	860.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	3.63	2.01	0.57	0.8	6.55	4.08	2.66	3.81	3.74	4.52	3.52	4.7
Merged-chr4-33271910-2	chr4	33271811	33272011	+	627.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23124.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.44	5.28	10.27	0.8	11.05	7.21	3.65	4.29	10.42	11.05	14.07	7.52
Merged-chr17-24480497-1	chr17	24480397	24480597	+	627.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-1419.0	NM_019988	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	2.83	7.8	2.28	0.8	3.68	8.47	1.99	3.67	2.36	0.5	5.02	3.13
Merged-chr18-65001296-1	chr18	65001196	65001396	+	627.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-22231.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.21	1.51	4.56	2.41	5.32	5.96	5.98	5.55	3.74	5.52	5.02	6.27
Merged-chr1-75467749-2	chr1	75467645	75467845	+	627.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	11726.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	3.63	4.02	7.99	4.83	7.36	9.09	2.99	6.31	9.05	7.53	5.02	8.46
Merged-chr1-170160717-2	chr1	170160625	170160825	+	627.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133806, intron 3 of 10)	L1MEg1|LINE|L1	14239.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	2.02	9.81	11.41	4.42	5.32	4.7	5.98	4.79	6.49	4.52	6.03	1.88
Merged-chr7-130074076-3	chr7	130073971	130074171	+	627.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111906.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	14.13	7.29	10.84	8.45	4.91	6.59	4.98	9.62	14.16	4.52	11.56	10.02
Merged-chr10-79997328-3	chr10	79997214	79997414	+	627.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013850)	promoter-TSS (NM_013850)	-294.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	5.65	5.53	0.57	9.25	5.73	4.7	5.65	6.17	8.26	12.55	9.04	5.64
Merged-chr9-110342204-2	chr9	110342106	110342306	+	627.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	8850.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	9.29	6.54	13.69	15.69	10.64	12.54	2.33	4.65	9.24	4.02	5.02	3.45
Merged-chr7-98991507-1	chr7	98991407	98991607	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 9 of 14)	B2_Mm2|SINE|B2	149637.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.62	2.01	4.56	7.24	6.55	4.08	1.0	6.03	1.57	2.51	2.51	4.7
Merged-chrX-61694999-1	chrX	61694899	61695099	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14617.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	1.62	1.01	1.14	6.44	3.68	5.96	2.99	3.48	10.42	5.02	5.53	5.33
Merged-chr15-30738819-1	chr15	30738719	30738919	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-300307.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	8.08	6.04	1.14	5.23	10.64	2.82	1.99	4.57	1.77	1.0	6.53	0.94
Merged-chr4-32304439-1	chr4	32304339	32304539	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112996.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.44	1.26	6.28	0.4	2.05	7.84	2.99	9.03	5.51	4.02	1.51	3.76
Merged-chr13-36088399-1	chr13	36088299	36088499	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201358, intron 2 of 2)	intron (NM_201358, intron 2 of 2)	28958.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	5.65	3.02	4.56	4.02	4.5	4.39	4.65	6.53	3.93	2.51	3.52	3.45
Merged-chr7-45051070-1	chr7	45050970	45051170	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175022, intron 2 of 13)	intron (NM_175022, intron 2 of 13)	1811.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	7.27	5.53	3.42	4.42	2.05	2.51	1.99	1.79	7.08	11.05	14.07	2.82
Merged-chr19-10502781-2	chr19	10502696	10502896	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025333, exon 4 of 4)	3' UTR (NM_025333, exon 4 of 4)	-19899.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	9.69	3.02	5.7	3.62	3.68	4.7	3.99	4.54	10.23	4.52	9.55	7.52
Merged-chr14-33392980-1	chr14	33392880	33393080	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016700, exon 6 of 12)	exon (NM_016700, exon 6 of 12)	18044.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	1.62	3.77	6.85	4.02	6.14	4.39	2.99	9.53	6.1	4.02	18.59	6.27
Merged-chr3-136914589-1	chr3	136914489	136914689	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008913, intron 10 of 13)	intron (NM_008913, intron 10 of 13)	244523.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	7.67	7.29	2.28	1.21	8.18	6.27	5.31	1.23	3.74	6.03	0.5	4.07
Merged-chr5-140798414-1	chr5	140798314	140798514	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	ID|SINE|ID	32017.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.23	5.28	8.56	8.45	8.18	2.2	5.65	5.89	3.93	5.52	5.02	3.45
Merged-chr12-33159580-1	chr12	33159480	33159680	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	11894.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.04	2.52	3.42	0.8	6.14	6.27	3.99	2.58	9.44	7.53	8.04	1.25
Merged-chr10-127428167-1	chr10	127428067	127428267	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	7300.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	3.23	2.52	1.14	3.22	4.09	6.27	2.99	5.8	8.65	2.51	2.01	3.45
Merged-chr2-146399842-1	chr2	146399742	146399942	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	112162.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	2.42	3.52	2.85	2.82	0.82	6.27	5.31	6.06	1.18	1.51	0.0	0.94
Merged-chr3-88137438-1	chr3	88137338	88137538	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-4934.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	2.83	3.02	2.28	0.8	4.09	1.25	1.99	1.21	5.31	2.51	4.52	3.45
Merged-chr19-5456984-1	chr19	5456884	5457084	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_198616, exon 1 of 1)	exon (NM_198616, exon 1 of 1)	579.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	6.06	9.06	6.85	2.41	5.73	3.76	0.0	3.25	4.52	5.02	4.52	2.19
Merged-chr13-44483605-1	chr13	44483505	44483705	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	43878.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.06	3.52	6.85	3.22	6.95	7.21	1.66	5.52	7.08	6.03	8.04	2.19
Merged-chr7-130936027-1	chr7	130935927	130936127	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019564)	promoter-TSS (NM_019564)	-176.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	3.23	0.25	1.71	0.4	0.82	0.63	1.66	3.62	5.31	0.0	1.51	10.02
Merged-chrX-9199942-1	chrX	9199842	9200042	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173414)	promoter-TSS (NM_173414)	-31.0	NM_173414	236285.0	Mm.245119	NM_173414	ENSMUSG00000047344	Lancl3	6030463G20Rik	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding	0.81	4.28	4.56	0.8	2.45	1.88	5.98	4.91	1.77	2.01	2.51	0.63
Merged-chr14-76169306-1	chr14	76169206	76169406	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	58415.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	2.42	1.76	2.28	3.22	5.73	1.88	1.33	5.13	5.51	3.01	6.53	6.89
Merged-chr13-34149210-1	chr13	34149110	34149310	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13754.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.62	2.77	3.99	4.83	4.5	4.7	5.31	4.99	6.29	3.01	4.52	3.45
Merged-chr2-121143481-1	chr2	121143381	121143581	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290812, intron 3 of 8)	intron (NM_001290812, intron 3 of 8)	1388.0	NM_029475	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	2.02	2.77	4.56	0.0	1.64	2.82	0.0	1.88	8.06	5.52	12.56	4.7
Merged-chr8-124775874-1	chr8	124775774	124775974	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17145.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	5.65	9.81	5.7	7.24	1.64	8.78	9.97	4.88	1.38	1.0	5.53	4.07
Merged-chr1-180344965-1	chr1	180344865	180345065	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-14416.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.42	3.77	7.99	6.84	4.09	3.14	1.99	2.78	5.9	4.02	8.04	8.14
Merged-chr17-47687616-1	chr17	47687516	47687716	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045945)	promoter-TSS (NR_045945)	6.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	9.29	7.04	6.85	3.22	2.86	6.9	4.65	5.38	11.21	4.02	4.02	15.35
Merged-chr17-80761378-1	chr17	80761278	80761478	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-33353.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	7.67	8.8	13.69	5.23	2.86	1.25	3.99	3.98	1.97	6.03	3.01	3.45
Merged-chr2-45270765-1	chr2	45270665	45270865	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-153323.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.04	1.51	1.14	2.41	6.55	5.64	5.98	6.0	8.26	9.54	4.52	3.45
Merged-chr7-100372696-1	chr7	100372596	100372796	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	463.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	14.54	4.28	5.7	2.01	5.32	9.72	1.33	3.5	7.08	6.53	8.54	3.13
Merged-chr2-119156252-2	chr2	119156133	119156333	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033136, intron 2 of 12)	intron (NM_001033136, intron 2 of 12)	801.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	5.25	7.29	3.99	7.64	5.32	8.15	5.31	3.87	9.64	4.52	11.05	9.4
Merged-chr18-65795530-1	chr18	65795430	65795630	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5048.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	8.08	3.27	0.0	0.0	0.82	5.02	2.66	7.32	13.37	5.02	4.02	0.94
Merged-chr10-22017400-1	chr10	22017300	22017500	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22734.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.42	1.51	2.28	7.24	2.45	4.39	4.65	5.52	2.56	2.01	2.51	5.01
Merged-chr5-99283817-1	chr5	99283717	99283917	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30890.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.4	1.76	2.28	0.8	5.73	7.53	1.0	5.47	0.79	4.02	3.01	4.07
Merged-chr10-67629744-1	chr10	67629644	67629844	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-57785.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	2.42	5.03	4.56	9.65	3.27	3.45	4.32	5.13	7.28	4.52	7.03	4.7
Merged-chr14-103680122-1	chr14	103680022	103680222	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	19310.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	1.62	2.52	3.99	2.82	4.5	4.7	3.65	4.01	0.98	3.01	7.03	2.19
Merged-chr19-21051083-1	chr19	21050983	21051183	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53627.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.83	0.25	0.0	0.0	4.91	9.72	7.31	2.07	4.33	10.54	2.51	0.63
Merged-chr14-70929118-1	chr14	70929018	70929218	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	39011.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.44	3.77	7.99	2.41	6.95	7.53	2.99	4.12	0.2	0.5	0.5	0.94
Merged-chr13-12147392-1	chr13	12147292	12147492	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39096.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	2.42	2.01	1.14	3.22	0.0	1.25	4.98	3.2	5.31	3.01	7.54	3.45
Merged-chr17-15631507-1	chr17	15631407	15631607	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045431)	promoter-TSS (NR_045431)	-281.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	2.02	5.03	5.7	8.04	3.27	5.33	1.0	5.3	4.92	4.52	6.53	1.57
Merged-chr10-8758649-1	chr10	8758549	8758749	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127421.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.04	2.01	6.85	3.22	0.82	6.59	2.66	6.48	5.9	2.51	3.52	4.39
Merged-chrX-95166076-1	chrX	95165976	95166176	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290385, exon 1 of 10)	5' UTR (NM_001290385, exon 1 of 10)	463.0	NM_001290385	236915.0	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.81	3.02	7.99	1.61	4.91	4.7	8.3	3.56	0.79	3.51	0.5	1.57
Merged-chr12-34504432-1	chr12	34504332	34504532	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	24457.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.46	5.79	4.56	6.84	4.09	2.82	2.99	8.58	8.46	13.56	16.58	10.02
Merged-chr8-56486190-1	chr8	56486090	56486290	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	4.04	8.8	3.42	6.44	2.45	8.78	2.66	3.39	7.87	13.56	9.55	1.25
Merged-chr6-17842956-1	chr6	17842856	17843056	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	93786.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.04	5.28	4.56	11.26	6.14	5.33	3.99	4.82	7.87	7.03	5.53	4.7
Merged-chr1-88240891-1	chr1	88240791	88240991	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 17 of 41)	intron (NM_001281466, intron 17 of 41)	13871.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	2.77	4.56	2.01	0.41	2.82	3.65	3.08	4.72	1.0	5.02	7.52
Merged-chrX-137017901-1	chrX	137017801	137018001	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082412, intron 4 of 6)	intron (NM_001082412, intron 4 of 6)	20401.0	NM_001082412	67062.0	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	0.81	0.75	10.84	5.63	0.0	1.88	8.64	6.11	4.13	5.02	7.03	1.88
Merged-chr9-86695493-1	chr9	86695393	86695593	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045835)	promoter-TSS (NR_045835)	51.0	NR_045835	319556.0	Mm.386894	NR_045835	ENSMUSG00000087466	A330041J22Rik	-	RIKEN cDNA A330041J22 gene	ncRNA	4.44	2.26	2.85	7.64	10.64	9.41	1.33	5.78	3.54	3.01	0.0	4.07
Merged-chr4-107829142-1	chr4	107829042	107829242	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	-6120.0	NR_151515	619295.0	Mm.331760	NM_001033800		Lrp8os2	B230314M03Rik	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2	ncRNA	2.42	2.01	6.28	3.22	4.91	1.88	5.98	4.85	0.98	1.0	3.52	4.07
Merged-chr4-122960507-2	chr4	122960437	122960637	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029662, intron 1 of 13)	intron (NM_029662, intron 1 of 13)	651.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	3.23	6.04	2.28	14.88	5.32	2.51	5.31	4.49	7.67	7.03	10.05	3.13
Merged-chr1-161412244-1	chr1	161412144	161412344	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	16806.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.42	1.51	2.28	4.83	0.41	4.08	3.65	9.9	3.54	0.0	11.05	7.83
Merged-chr8-61877809-1	chr8	61877709	61877909	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081390, exon 2 of 20)	exon (NM_001081390, exon 2 of 20)	24881.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.42	1.01	11.41	3.62	4.09	6.9	2.66	6.14	1.38	0.5	9.55	3.13
Merged-chr12-51694125-1	chr12	51694025	51694225	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	B1_Mur3|SINE|Alu	-2211.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.4	3.02	5.13	4.02	6.14	4.39	3.65	6.25	7.28	7.03	10.55	3.76
Merged-chr2-4447509-1	chr2	4447409	4447609	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	46533.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.42	3.52	5.13	5.23	4.5	2.51	4.98	4.79	10.42	7.53	7.03	5.95
Merged-chr10-128702808-2	chr10	128702718	128702918	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183417, intron 3 of 7)	RSINE1|SINE|B4	2233.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	4.44	3.52	1.14	5.23	7.36	3.45	4.65	6.36	9.44	9.04	4.02	3.45
Merged-chr10-42990104-1	chr10	42990004	42990204	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153349, intron 1 of 2)	B3|SINE|B2	1058.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	6.46	2.26	2.28	0.4	6.14	3.76	0.66	2.66	10.62	9.04	9.55	2.51
Merged-chr2-131955337-1	chr2	131955237	131955437	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001278520, exon 3 of 3)	3' UTR (NM_001278520, exon 3 of 3)	4300.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	6.06	2.26	3.99	4.42	8.18	2.51	3.99	3.64	4.33	2.51	2.51	2.82
Merged-chr11-118493790-2	chr11	118493699	118493899	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039168, intron 14 of 14)	intron (NM_001039168, intron 14 of 14)	16967.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.85	4.02	3.42	1.61	6.95	2.82	2.33	4.29	11.6	2.01	2.01	8.14
Merged-chr8-33944877-1	chr8	33944777	33944977	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1L-int|LTR|ERVL-MaLR	-15014.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	6.86	1.51	6.85	0.4	2.45	6.9	3.65	5.02	4.52	4.02	3.01	8.46
Merged-chr19-11411751-1	chr19	11411651	11411851	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029499, intron 1 of 6)	intron (NM_029499, intron 1 of 6)	4090.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	4.85	2.01	7.99	1.61	8.18	5.64	8.64	5.78	3.15	7.53	6.53	6.89
Merged-chr2-144636005-1	chr2	144635905	144636105	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	36052.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	3.23	3.52	3.42	0.8	2.86	5.64	6.64	4.51	3.15	9.04	3.01	1.25
Merged-chr5-134614555-2	chr5	134614447	134614647	+	626.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	478.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	5.65	8.05	10.27	13.27	5.73	5.64	5.98	8.02	7.28	7.53	12.56	1.57
Merged-chr9-115479111-3	chr9	115479013	115479213	+	626.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97294.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	3.63	6.79	5.7	9.65	6.55	1.25	2.99	6.84	8.85	11.55	19.09	15.35
Merged-chr11-121705320-3	chr11	121705194	121705394	+	626.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	2867.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.23	9.06	1.14	10.86	6.55	6.9	6.31	5.55	8.06	8.03	2.51	5.01
Merged-chr11-107676812-3	chr11	107676712	107676912	+	626.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	39090.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	9.69	8.3	15.97	8.85	6.14	7.21	12.29	8.19	5.51	9.04	9.55	10.65
Merged-chr13-48871237-3	chr13	48871149	48871349	+	626.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011078)	promoter-TSS (NM_011078)	-364.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	8.08	11.32	11.98	8.85	18.41	9.41	6.64	5.83	5.11	7.03	10.05	11.28
Merged-chr13-57022919-2	chr13	57022812	57023012	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127123.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	2.42	0.25	0.0	0.8	0.82	5.33	3.32	4.15	10.62	10.04	14.57	15.98
Merged-chr2-156352345-2	chr2	156352225	156352425	+	626.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-39621.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	5.65	5.28	6.85	2.82	1.64	0.63	0.0	0.22	10.62	10.04	4.52	13.78
Merged-chr18-65965230-1	chr18	65965130	65965330	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	4948.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	3.23	4.78	6.28	1.61	6.55	4.39	3.99	4.82	4.92	5.02	14.07	5.01
Merged-chr9-53398515-2	chr9	53398421	53398621	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 7 of 7)	intron (NM_212445, intron 7 of 7)	2365.0	NR_105807	102466640.0		NR_105807	ENSMUSG00000098362	Mir130c	Gm27641|mmu-mir-130c	microRNA 130c	ncRNA	4.44	7.8	1.14	2.41	5.32	1.57	1.33	6.11	8.06	12.05	12.56	4.7
Merged-chr12-35889982-2	chr12	35889887	35890087	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35634.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	2.42	4.78	7.99	2.82	5.73	5.33	0.33	7.4	7.67	9.54	13.57	9.71
Merged-chrX-142372615-1	chrX	142372515	142372715	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	17920.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	5.65	2.77	3.99	4.83	4.91	7.53	4.65	5.47	5.7	3.51	3.01	5.64
Merged-chr14-19995827-1	chr14	19995727	19995927	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-18578.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.65	4.53	6.85	8.04	7.36	5.96	5.65	4.82	7.28	8.03	6.53	5.95
Merged-chr15-56695592-1	chr15	56695492	56695692	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1046.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	6.06	6.04	7.42	7.64	7.77	10.03	7.31	6.67	8.46	8.03	3.01	3.45
Merged-chr19-36554060-1	chr19	36553960	36554160	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-579.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	4.44	4.78	0.0	4.83	7.77	5.33	5.31	6.11	2.56	3.01	4.52	5.95
Merged-chr19-45544271-3	chr19	45544185	45544385	+	626.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16279.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	4.85	12.83	7.99	8.04	6.95	10.35	5.31	7.21	6.69	9.04	10.55	15.35
Merged-chr11-11742919-2	chr11	11742823	11743023	+	626.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	Tigger16a|DNA|TcMar-Tigger	52746.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.44	4.53	4.56	5.63	7.77	6.27	4.98	5.38	5.51	5.52	11.56	10.02
Merged-chr17-34437525-2	chr17	34437449	34437649	+	626.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	38388.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	4.85	4.78	9.7	2.82	5.73	2.82	0.66	0.79	3.34	3.01	1.51	3.76
Merged-chr14-101608126-2	chr14	101608064	101608264	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081278, exon 1 of 19)	exon (NM_001081278, exon 1 of 19)	1027.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.63	8.55	4.56	9.65	4.91	4.08	4.98	4.74	1.57	5.52	7.03	2.82
Merged-chr5-124628532-1	chr5	124628432	124628632	+	626.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-520.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.81	3.52	2.85	4.42	2.45	6.27	5.65	4.15	8.06	3.51	9.55	6.89
Merged-chr19-47178891-2	chr19	47178745	47178945	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021360)	promoter-TSS (NM_021360)	25.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	8.48	4.02	1.71	4.42	6.55	2.82	2.33	4.82	3.34	5.02	5.02	9.4
Merged-chr6-83651318-2	chr6	83651207	83651407	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	L1_Mus1|LINE|L1	4809.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.02	3.27	10.27	6.03	5.32	2.51	17.94	6.84	2.95	2.51	8.54	3.45
Merged-chr13-5705148-2	chr13	5705058	5705258	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152934.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.42	2.26	0.0	5.23	9.0	3.76	3.32	6.0	14.95	5.02	10.05	3.45
Merged-chr19-5389809-2	chr19	5389685	5389885	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033224, exon 1 of 1)	non-coding (NR_033224, exon 1 of 1)	-1082.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	6.06	6.04	1.14	5.23	8.18	4.7	5.98	4.01	4.52	7.53	2.51	3.76
Merged-chr3-9853229-1	chr3	9853129	9853329	+	626.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19550.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	2.52	4.56	6.44	2.86	0.31	3.32	4.82	12.0	6.03	8.04	7.52
Merged-chr18-39246524-1	chr18	39246424	39246624	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 16 of 21)	intron (NM_001361073, intron 16 of 21)	240721.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.04	0.5	1.14	4.02	3.68	7.53	3.32	5.78	2.56	2.51	3.01	3.76
Merged-chr11-115496740-2	chr11	115496615	115496815	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008258)	TTS (NM_008258)	-4901.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	11.71	8.05	10.84	2.01	11.86	7.53	4.65	4.57	6.49	5.02	5.53	4.39
Merged-chr5-43890313-1	chr5	43890213	43890413	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	21504.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.86	3.27	3.42	2.01	6.95	5.96	2.33	7.23	3.74	5.52	5.53	4.07
Merged-chr9-83533219-1	chr9	83533119	83533319	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15119.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.04	3.27	11.41	5.63	4.09	6.27	4.65	9.17	5.31	3.01	9.55	5.33
Merged-chr5-99219180-2	chr5	99219079	99219279	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	MTC|LTR|ERVL-MaLR	33748.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.08	6.79	3.42	0.8	6.14	5.96	0.0	0.59	6.1	8.03	1.51	3.13
Merged-chr2-166082369-2	chr2	166082263	166082463	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252579, intron 11 of 20)	intron (NM_001252579, intron 11 of 20)	72922.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	9.69	4.28	11.41	3.62	7.77	10.98	4.32	4.23	11.8	12.55	10.55	10.34
Merged-chr1-131765730-2	chr1	131765638	131765838	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177243, intron 18 of 20)	intron (NM_177243, intron 18 of 20)	21716.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	13.33	7.29	2.85	5.63	3.68	5.02	3.99	6.17	3.54	4.52	9.04	9.4
Merged-chr3-21917761-2	chr3	21917661	21917861	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158891.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.65	9.31	9.7	0.8	3.68	10.66	1.33	1.65	10.03	12.05	4.52	5.01
Merged-chr5-23616198-2	chr5	23616085	23616285	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	386.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	5.65	9.56	3.99	7.24	6.95	4.08	3.99	6.36	10.23	3.51	4.52	5.33
Merged-chr5-139735789-2	chr5	139735704	139735904	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	529.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.85	2.52	2.85	0.8	2.86	5.33	4.32	5.89	5.9	8.54	16.08	7.52
Merged-chr2-31442649-1	chr2	31442549	31442749	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-27621.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	11.31	15.59	11.98	5.63	2.86	4.7	1.99	1.01	2.36	7.03	1.51	3.13
Merged-chr19-18625160-2	chr19	18625055	18625255	+	626.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	6658.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	6.46	8.55	2.28	2.41	6.95	8.78	5.98	5.92	7.08	9.54	10.05	3.45
Merged-chr4-149756566-3	chr4	149756489	149756689	+	626.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027460, intron 2 of 6)	intron (NM_027460, intron 2 of 6)	17678.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	11.31	7.04	10.27	6.84	8.59	5.33	3.99	7.04	6.88	13.05	11.56	6.27
Merged-chr15-37135791-1	chr15	37135691	37135891	+	626.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-97245.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	2.42	2.52	3.42	7.64	8.18	6.59	7.31	6.39	2.16	7.03	3.01	3.45
Merged-chr17-83044041-1	chr17	83043941	83044141	+	626.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045094, intron 2 of 3)	intron (NR_045094, intron 2 of 3)	34184.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	5.25	4.78	0.0	0.4	5.73	7.84	2.66	5.92	6.29	1.51	3.01	6.58
Merged-chr6-88306917-1	chr6	88306817	88307017	+	626.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84649.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	2.83	2.26	3.42	5.63	6.14	5.33	4.65	5.02	4.72	14.06	6.53	4.07
Merged-chr11-86485203-2	chr11	86485072	86485272	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029788, intron 1 of 8)	CpG	515.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	8.08	1.51	4.56	6.84	5.32	5.96	5.98	5.27	7.47	7.03	10.05	10.96
Merged-chr2-115368507-2	chr2	115368413	115368613	+	626.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24233.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	7.27	3.52	11.98	10.86	6.55	7.84	7.97	16.63	5.9	4.52	6.03	2.51
Merged-chr17-26948639-1	chr17	26948539	26948739	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037244)	promoter-TSS (NR_037244)	-520.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	2.02	4.28	0.57	0.8	8.59	5.33	1.66	2.72	2.75	7.53	6.53	3.76
Merged-chr19-5511313-2	chr19	5511238	5511438	+	626.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-821.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	8.48	7.04	4.56	4.83	3.68	4.08	2.99	4.21	5.31	8.54	8.04	13.78
Merged-chr2-104444947-2	chr2	104444865	104445065	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010434, intron 3 of 15)	intron (NM_010434, intron 3 of 15)	-16025.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	2.42	7.04	15.4	12.07	9.0	8.78	5.65	8.21	7.28	15.57	17.08	5.95
Merged-chr10-79664220-1	chr10	79664120	79664320	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013591)	promoter-TSS (NM_013591)	-339.0	NM_013591	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	7.67	8.8	5.13	4.02	10.64	10.35	4.98	6.39	15.74	9.04	7.54	5.95
Merged-chr14-31955145-2	chr14	31955032	31955232	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73971.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	5.65	8.05	7.99	4.42	10.23	10.35	1.33	6.5	8.26	10.04	17.08	6.58
Merged-chr2-50984042-2	chr2	50983939	50984139	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74355.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.83	1.76	1.14	3.22	4.91	5.02	4.98	11.58	10.62	14.56	11.05	6.27
Merged-chr19-6331338-2	chr19	6331234	6331434	+	626.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3645.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	6.86	6.54	7.99	6.84	11.45	10.03	5.98	5.69	7.28	13.05	8.54	2.51
Merged-chr16-97463556-1	chr16	97463456	97463656	+	626.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-650.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	6.86	9.81	3.99	1.61	9.0	5.96	6.64	4.77	7.28	5.52	8.54	5.95
Merged-chr7-138847628-1	chr7	138847528	138847728	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	1242.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	7.67	1.76	9.13	4.42	1.23	1.88	4.98	5.21	6.1	4.02	7.54	3.76
Merged-chr14-17904485-2	chr14	17904398	17904598	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-77146.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.63	4.02	1.14	6.44	6.55	5.64	4.65	7.91	8.65	3.51	7.54	6.27
Merged-chr1-59604121-1	chr1	59604021	59604221	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	66713.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	2.83	1.01	1.14	0.0	6.95	2.51	3.65	7.49	4.13	4.02	11.56	0.31
Merged-chr10-80140442-1	chr10	80140342	80140542	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1075.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	4.02	2.28	2.41	1.64	0.0	0.0	1.46	3.54	1.51	1.0	6.27
Merged-chrX-151813832-1	chrX	151813732	151813932	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021523, intron 2 of 82)	intron (NM_021523, intron 2 of 82)	10550.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	4.04	3.77	5.13	2.01	2.05	9.41	4.98	4.6	8.46	10.04	4.02	3.76
Merged-chr10-98941029-1	chr10	98940929	98941129	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	25877.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.86	3.52	2.85	2.41	3.27	4.7	5.65	5.27	7.28	8.54	7.54	4.07
Merged-chr15-64111479-1	chr15	64111379	64111579	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010026, intron 25 of 30)	Lx8b|LINE|L1	-51031.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.25	3.02	3.42	3.22	6.55	2.51	2.66	6.59	5.11	5.52	6.03	0.0
Merged-chr3-144170720-1	chr3	144170620	144170820	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	31612.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.23	9.06	4.56	4.42	0.82	0.94	5.65	4.91	2.56	2.01	3.01	2.82
Merged-chr5-124484158-1	chr5	124484058	124484258	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029532, intron 1 of 1)	B2_Mm2|SINE|B2	1003.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	4.44	1.76	0.0	1.61	6.95	5.64	0.0	2.5	9.83	12.05	6.03	3.13
Merged-chr7-123201499-1	chr7	123201399	123201599	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13367.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	6.46	3.77	1.14	5.23	8.18	8.78	2.66	3.9	5.7	8.03	2.01	2.82
Merged-chr3-51540009-1	chr3	51539909	51540109	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080793, intron 3 of 7)	intron (NM_080793, intron 3 of 7)	-19748.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	3.23	3.77	0.0	3.62	4.91	4.39	2.99	4.63	6.1	1.0	6.53	5.01
Merged-chr19-12596429-1	chr19	12596329	12596529	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015503, exon 1 of 2)	non-coding (NR_015503, exon 1 of 2)	137.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	1.62	5.53	3.99	5.63	5.32	3.45	3.32	5.44	1.77	6.53	5.53	3.13
Merged-chr6-49075106-1	chr6	49075006	49075206	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_029353, exon 2 of 4)	exon (NM_029353, exon 2 of 4)	1311.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	7.67	8.55	7.99	11.26	4.5	2.51	1.99	8.75	9.24	11.05	5.53	2.19
Merged-chr7-130762282-1	chr7	130762182	130762382	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11787.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	6.46	6.04	5.7	3.22	1.23	9.72	2.33	5.38	3.34	4.02	4.02	2.51
Merged-chr5-136568114-3	chr5	136567980	136568180	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-590.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	9.69	5.53	6.85	9.65	9.0	2.51	7.64	4.51	8.65	5.52	5.53	4.7
Merged-chr17-81380058-1	chr17	81379958	81380158	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-314973.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	3.23	2.77	7.42	3.22	2.86	6.27	7.31	6.2	4.92	6.53	5.53	4.07
Merged-chr10-121457922-1	chr10	121457822	121458022	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	ID4|SINE|ID	18328.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.4	1.01	2.85	1.21	6.95	1.88	0.66	4.71	1.77	0.0	0.0	0.31
Merged-chr9-78073936-2	chr9	78073821	78074021	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	21963.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	5.65	10.31	7.99	7.24	5.32	6.9	4.65	8.52	5.9	9.04	12.06	1.88
Merged-chr11-21448130-2	chr11	21448036	21448236	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	63044.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	5.65	5.03	7.42	14.88	3.27	2.2	0.66	0.36	9.24	5.52	12.56	5.64
Merged-chr8-72365946-1	chr8	72365846	72366046	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007944, intron 21 of 23)	X3_LINE|LINE|RTE-BovB	46884.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	9.69	1.51	1.71	1.21	6.55	4.7	3.32	4.15	4.72	1.51	12.56	4.39
Merged-chr17-45546023-1	chr17	45545923	45546123	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013749, intron 2 of 2)	intron (NM_001013749, intron 2 of 2)	3654.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	1.21	2.26	1.71	2.41	0.0	1.25	0.0	6.28	7.67	4.02	6.53	9.08
Merged-chr8-72326739-1	chr8	72326639	72326839	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7677.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.81	7.55	2.28	3.22	2.86	4.39	3.32	1.82	0.98	1.0	3.01	0.31
Merged-chr18-6666934-1	chr18	6666834	6667034	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	63301.0	NM_027598	70901.0	Mm.158484	NM_027598	ENSMUSG00000039540	4921524L21Rik	-	RIKEN cDNA 4921524L21 gene	protein-coding	2.42	1.76	19.4	9.25	3.27	0.31	1.33	5.33	2.75	1.0	1.0	0.31
Merged-chr9-64734781-1	chr9	64734681	64734881	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	2975.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	2.42	3.02	2.28	1.61	10.64	5.33	1.99	5.61	4.33	6.03	0.5	1.57
Merged-chr3-95173614-1	chr3	95173514	95173714	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_073549, exon 19 of 19)	non-coding (NR_073549, exon 19 of 19)	9275.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	1.21	2.52	2.28	2.41	6.95	7.84	1.33	5.75	2.75	3.01	3.52	6.58
Merged-chr14-118101393-1	chr14	118101293	118101493	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6-int|LTR|ERVK	31372.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	5.65	3.52	2.28	1.61	8.18	15.05	1.99	5.86	4.52	9.54	3.01	2.51
Merged-chr19-44419060-1	chr19	44418960	44419160	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11351.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	2.42	3.02	2.28	1.61	0.82	2.2	4.98	4.04	5.51	3.51	4.02	7.52
Merged-chr11-117176493-1	chr11	117176393	117176593	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23168.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.23	4.28	3.42	0.8	6.95	5.96	2.33	1.29	8.65	11.05	6.03	9.4
Merged-chr13-105214083-1	chr13	105213983	105214183	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	URR1A|DNA|hAT-Charlie	78931.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	8.88	0.75	3.42	1.61	5.32	6.27	5.65	6.87	3.15	7.03	7.54	3.45
Merged-chr7-100527238-1	chr7	100527138	100527338	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9862.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	1.62	2.52	1.14	0.8	1.64	7.84	1.99	4.21	3.74	3.51	5.53	6.89
Merged-chr8-105499282-2	chr8	105499154	105499354	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-2352.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	1.21	5.03	5.7	4.83	4.91	5.02	4.65	4.35	8.06	5.52	10.05	6.58
Merged-chr5-104434992-1	chr5	104434892	104435092	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001204202)	promoter-TSS (NM_001204202)	-119.0	NM_001204201	20750.0	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	2.83	3.02	10.27	9.65	0.82	3.76	3.65	5.07	1.18	3.51	5.53	3.13
Merged-chr18-67183249-1	chr18	67183149	67183349	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-22110.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	3.23	4.28	1.14	4.83	2.86	5.02	5.98	7.74	0.59	1.0	0.0	1.88
Merged-chr3-122573205-2	chr3	122573105	122573305	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31524.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	7.67	7.29	3.42	3.62	3.68	20.7	3.99	0.9	12.0	12.55	9.04	5.01
Merged-chr8-47693353-1	chr8	47693253	47693453	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18194.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	1.51	1.71	5.23	2.86	6.59	0.66	3.95	4.13	5.52	5.02	5.64
Merged-chr7-120823447-2	chr7	120823336	120823536	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19395.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	10.09	7.04	3.42	4.02	8.18	5.64	3.65	3.93	8.46	2.51	3.52	7.21
Merged-chr1-72712540-1	chr1	72712440	72712640	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009084, intron 3 of 3)	B1_Mus2|SINE|Alu	1280.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	4.04	4.28	13.69	6.03	3.68	4.08	1.0	4.51	10.03	10.04	4.02	3.13
Merged-chr19-5811315-1	chr19	5811215	5811415	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8643.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	1.21	2.26	2.85	2.01	4.91	1.25	5.98	4.51	3.74	4.02	4.52	7.52
Merged-chr11-43367988-1	chr11	43367888	43368088	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	6473.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	5.65	3.02	1.14	2.01	0.82	7.84	0.0	4.29	6.69	2.01	11.05	2.51
Merged-chr7-99708852-1	chr7	99708752	99708952	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 1 of 13)	intron (NM_175316, intron 1 of 13)	-2010.0	NM_001252530	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.0	2.01	3.99	2.41	4.09	0.94	5.65	5.78	0.79	2.51	4.02	5.01
Merged-chr13-105214501-1	chr13	105214401	105214601	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	78513.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.85	3.02	2.28	4.83	4.5	1.88	5.65	5.97	4.52	9.04	5.02	3.76
Merged-chr11-37144168-1	chr11	37144068	37144268	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-199927.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.4	1.51	0.0	2.82	2.45	3.14	4.32	4.71	0.59	3.01	0.0	1.25
Merged-chr2-35416699-1	chr2	35416599	35416799	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 4 of 8)	intron (NM_010283, intron 4 of 8)	-19525.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	4.04	14.84	2.28	1.61	3.27	3.76	4.32	4.18	2.56	2.51	0.0	0.31
Merged-chr19-28010058-1	chr19	28009958	28010158	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	-285.0	NM_001360357	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	4.85	4.53	11.98	5.23	5.32	4.39	6.98	5.13	1.97	5.52	2.51	1.88
Merged-chr8-25715424-1	chr8	25715324	25715524	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081269, exon 23 of 23)	3' UTR (NM_001081269, exon 23 of 23)	-4624.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	5.65	3.52	4.56	0.0	6.95	7.21	3.32	5.92	2.75	4.52	0.5	0.63
Merged-chr1-171762230-1	chr1	171762130	171762330	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4902.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	4.44	3.02	13.69	6.84	0.0	2.51	4.98	5.1	2.75	1.0	4.02	1.25
Merged-chr8-88237507-1	chr8	88237407	88237607	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	(TTTTTG)n|Simple_repeat|Simple_repeat	-34896.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	8.88	7.04	4.56	9.65	3.27	5.33	1.33	4.49	6.29	5.52	13.57	10.34
Merged-chr3-88461677-3	chr3	88461577	88461777	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163489)	promoter-TSS (NM_001163489)	-495.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	4.85	8.8	11.98	0.0	8.18	9.41	1.66	1.77	7.47	14.56	15.07	6.89
Merged-chr11-70815778-1	chr11	70815678	70815878	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3217.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	2.42	7.55	2.28	3.22	2.45	5.64	0.33	3.22	8.65	5.02	3.52	2.82
Merged-chr7-88429150-1	chr7	88429050	88429250	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-1123.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	4.85	3.02	19.4	8.85	1.64	1.25	2.66	1.96	1.77	2.01	3.52	1.25
Merged-chr9-65676030-1	chr9	65675930	65676130	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-518.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	12.11	5.03	2.28	2.01	9.0	9.41	7.97	2.83	9.64	10.54	7.54	8.14
Merged-chr3-59125773-2	chr3	59125675	59125875	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	4987.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	5.25	6.04	10.84	8.45	9.0	2.82	1.33	6.48	2.16	3.01	1.0	1.57
Merged-chr9-91364642-1	chr9	91364542	91364742	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009573, exon 1 of 3)	exon (NM_009573, exon 1 of 3)	1157.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	3.63	4.53	1.14	0.8	4.5	7.21	9.3	6.25	3.74	1.0	1.0	0.94
Merged-chr9-14175252-1	chr9	14175152	14175352	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-101049.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	2.02	4.53	13.12	4.83	3.68	3.76	1.99	2.97	2.16	2.51	2.01	2.19
Merged-chr3-36571540-1	chr3	36571440	36571640	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009828, intron 2 of 8)	CpG	1498.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	2.42	4.28	6.85	6.03	6.14	4.08	6.31	5.55	9.64	4.52	4.02	5.33
Merged-chr9-101182176-1	chr9	101182076	101182276	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161362, intron 4 of 13)	intron (NM_001161362, intron 4 of 13)	16897.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	6.86	10.56	5.13	9.25	5.73	4.7	3.32	4.68	7.67	8.03	12.06	4.39
Merged-chr16-21192772-1	chr16	21192672	21192872	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12023.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	3.23	6.04	6.85	2.41	0.82	5.02	4.65	6.25	4.72	5.02	4.52	4.07
Merged-chr17-42954272-1	chr17	42954172	42954372	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-62283.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	11.31	4.78	4.56	12.47	4.91	0.31	3.99	2.75	1.97	0.0	0.5	0.31
Merged-chr2-14184561-1	chr2	14184461	14184661	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	10037.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	5.65	5.53	2.28	6.84	5.73	5.64	3.99	9.42	9.05	9.04	6.53	3.13
Merged-chr10-16994589-1	chr10	16994489	16994689	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	101193.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.06	7.04	3.99	8.04	9.0	3.45	4.98	2.58	4.13	5.02	2.51	5.33
Merged-chr12-4973144-1	chr12	4973044	4973244	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362349, intron 15 of 27)	intron (NM_001362349, intron 15 of 27)	55791.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	1.62	2.26	7.42	6.44	6.95	6.9	1.99	4.68	5.9	5.02	7.03	3.45
Merged-chr3-19258778-1	chr3	19258678	19258878	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122759, intron 2 of 12)	intron (NM_001122759, intron 2 of 12)	6230.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	1.51	5.13	1.61	5.73	3.45	3.99	5.64	5.7	2.01	10.05	3.45
Merged-chr5-24051273-1	chr5	24051173	24051373	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20583.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.0	0.0	1.14	0.0	4.09	3.14	6.31	4.99	0.0	0.0	0.0	0.31
Merged-chr12-110777283-1	chr12	110777183	110777383	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	B3|SINE|B2	39351.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	3.63	6.04	2.28	2.01	6.55	7.53	3.65	6.76	7.08	2.51	4.02	1.88
Merged-chr12-41295962-1	chr12	41295862	41296062	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	190095.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.4	0.5	1.71	0.0	1.23	7.21	6.31	4.79	0.39	3.01	1.0	3.76
Merged-chr7-141070314-3	chr7	141070260	141070460	+	625.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177897, intron 14 of 19)	CpG	-7869.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	6.46	5.53	10.27	6.84	6.55	5.64	8.64	5.27	4.33	5.02	5.02	7.83
Merged-chr6-83690453-2	chr6	83690365	83690565	+	625.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12608.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	12.52	3.52	0.57	2.01	8.59	7.84	2.66	4.68	8.85	3.51	6.53	7.52
Merged-chr8-123202462-3	chr8	123202347	123202547	+	625.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007876)	TTS (NM_007876)	10341.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	8.88	8.05	6.85	4.02	6.14	8.78	4.32	4.79	11.8	6.03	7.54	5.33
Merged-chr6-142711297-3	chr6	142711214	142711414	+	625.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9040.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	5.65	8.8	5.13	9.65	7.36	9.09	5.65	4.77	12.0	7.53	9.55	5.95
Merged-chr6-72990368-2	chr6	72990254	72990454	+	625.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31606.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	8.08	5.28	13.12	10.46	6.14	5.33	9.63	7.04	9.05	7.53	6.53	4.7
Merged-chr6-72235559-2	chr6	72235509	72235709	+	625.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153778)	promoter-TSS (NM_153778)	-32.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	6.06	3.77	8.56	2.01	4.09	5.02	3.65	3.25	4.72	6.03	10.55	4.07
Merged-chr14-52124127-2	chr14	52124015	52124215	+	625.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168515, intron 6 of 24)	B3|SINE|B2	13212.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.85	4.53	11.41	7.64	5.32	7.84	4.32	7.63	11.6	10.54	10.05	4.07
Merged-chr8-121925817-2	chr8	121925710	121925910	+	625.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007608, intron 3 of 6)	intron (NM_007608, intron 3 of 6)	17977.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	6.86	5.79	7.42	4.02	2.05	9.09	5.31	3.56	5.51	5.02	7.03	5.33
Merged-chr15-102693102-2	chr15	102692988	102693188	+	625.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21222.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	3.23	3.77	3.99	4.83	12.27	4.7	5.65	4.49	7.08	1.51	14.57	1.57
Merged-chr17-57347937-2	chr17	57347839	57348039	+	625.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10747.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.65	1.26	4.56	0.8	6.55	6.27	6.98	5.92	7.67	11.05	12.06	8.46
Merged-chr16-3237512-1	chr16	3237412	3237612	+	625.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-354886.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	1.62	10.56	5.7	7.64	2.45	2.51	3.99	2.97	0.59	0.5	1.0	0.0
Merged-chr9-116177457-1	chr9	116177357	116177557	+	625.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2094.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.83	2.01	2.28	1.61	4.09	4.39	3.99	6.25	5.51	2.51	3.01	3.76
Merged-chr8-67997018-1	chr8	67996918	67997118	+	625.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-22444.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	2.42	3.52	2.28	2.01	5.73	5.02	9.63	4.85	3.15	6.53	6.03	2.82
Merged-chr13-20049807-3	chr13	20049729	20049929	+	625.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-40678.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.25	6.04	3.42	6.44	5.73	6.27	5.31	7.77	12.39	7.53	9.55	6.27
Merged-chr6-52211742-2	chr6	52211645	52211845	+	625.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015611, intron 1 of 2)	CpG	1322.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	4.85	7.29	6.85	4.02	2.45	6.59	4.98	4.96	7.08	16.07	18.59	6.89
Merged-chr4-45097671-2	chr4	45097561	45097761	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10452.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	3.63	3.52	3.42	5.63	6.95	0.63	7.64	5.13	8.85	7.03	8.54	9.08
Merged-chr9-118653139-2	chr9	118653058	118653258	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 5 of 27)	RSINE1|SINE|B4	46449.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.65	6.79	2.85	4.02	5.73	6.59	8.64	6.48	7.28	4.02	10.55	5.33
Merged-chr11-78388821-1	chr11	78388721	78388921	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2213.0	NM_001277290	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	1.62	6.04	10.27	8.85	2.05	5.02	4.98	6.22	3.54	2.51	3.01	11.59
Merged-chr18-31766933-2	chr18	31766813	31767013	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153515, intron 2 of 7)	intron (NM_153515, intron 2 of 7)	6297.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	6.06	4.53	3.42	0.8	4.09	6.9	4.98	3.14	7.67	10.54	20.1	9.71
Merged-chr2-119189514-2	chr2	119189422	119189622	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139139, intron 1 of 10)	intron (NM_139139, intron 1 of 10)	15013.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	7.27	4.02	1.14	2.82	4.91	7.21	1.66	4.49	8.85	6.53	9.55	4.39
Merged-chr15-90225381-2	chr15	90225282	90225482	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106106)	TTS (NR_106106)	1022.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	1.62	4.53	2.28	4.02	6.55	5.64	1.66	6.25	7.87	3.51	12.06	5.64
Merged-chr4-55630894-1	chr4	55630794	55630994	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98419.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.06	7.04	0.57	5.23	3.68	5.33	4.65	6.28	5.51	3.51	2.01	2.51
Merged-chr12-111894220-1	chr12	111894120	111894320	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	L2c|LINE|L2	13835.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.04	5.53	6.28	8.04	5.73	5.02	2.66	5.44	6.1	5.52	7.03	3.13
Merged-chr8-95204108-2	chr8	95204021	95204221	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61581.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.21	5.53	3.42	5.23	3.27	6.59	2.99	7.63	10.03	14.56	6.53	5.33
Merged-chr11-69332204-2	chr11	69332041	69332241	+	625.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010599, exon 14 of 14)	exon (NM_010599, exon 14 of 14)	5883.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	4.04	5.79	1.14	3.62	4.91	6.27	3.32	1.29	6.1	7.53	4.52	7.52
Merged-chr7-80629511-2	chr7	80629403	80629603	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-6514.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	5.65	3.27	7.42	2.82	6.55	2.51	8.3	4.18	8.65	1.51	4.52	7.52
Merged-chr2-102897607-1	chr2	102897507	102897707	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	Lx5|LINE|L1	4058.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.44	1.76	2.85	0.8	6.14	5.02	3.65	5.13	7.67	6.53	9.55	3.13
Merged-chr3-103374266-2	chr3	103374176	103374376	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	94983.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	4.44	7.55	3.99	5.23	4.5	10.03	3.65	3.62	7.87	5.52	8.04	7.83
Merged-chr10-54131914-1	chr10	54131814	54132014	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	55992.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	1.62	9.56	1.14	6.84	7.36	8.78	3.99	4.85	7.47	9.04	3.52	2.51
Merged-chr8-25080439-2	chr8	25080361	25080561	+	625.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	ORR1D1-int|LTR|ERVL-MaLR	21350.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.25	6.54	1.71	2.41	5.73	3.14	4.98	7.6	3.15	2.51	1.51	6.89
Merged-chr2-129502847-1	chr2	129502747	129502947	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	33755.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.83	8.05	2.28	2.41	2.45	4.7	4.32	5.64	3.93	4.52	7.03	6.58
Merged-chr7-141911497-1	chr7	141911397	141911597	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9036.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.0	4.28	0.0	1.61	7.77	7.53	2.33	3.62	4.13	0.5	5.53	1.57
Merged-chr4-117189553-2	chr4	117189438	117189638	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-6914.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.06	7.04	7.42	8.04	10.64	4.7	10.3	4.37	12.39	9.04	2.51	14.41
Merged-chr11-21999718-2	chr11	21999608	21999808	+	625.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011023, intron 2 of 4)	intron (NM_011023, intron 2 of 4)	1943.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	6.46	4.02	4.56	8.45	6.14	0.63	3.32	6.87	2.95	3.01	5.53	7.21
Merged-chr7-19813745-3	chr7	19813656	19813856	+	625.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	8999.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	4.85	6.54	10.84	8.85	6.14	5.96	4.65	8.33	7.47	5.52	8.54	2.51
Merged-chr11-98975474-1	chr11	98975374	98975574	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177303)	TTS (NM_001177303)	7542.0	NM_178596	353155.0	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	2.83	2.26	0.57	4.02	9.0	6.9	3.32	5.33	5.9	7.03	2.51	4.07
Merged-chr11-26581709-1	chr11	26581609	26581809	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	12211.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.42	0.5	3.42	0.8	6.55	8.47	1.66	5.38	10.23	4.52	4.02	2.51
Merged-chr14-45644278-1	chr14	45644178	45644378	+	625.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	13775.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	1.62	2.52	1.71	1.61	1.23	1.25	1.99	4.88	10.82	13.56	4.02	7.52
Merged-chr3-8983308-1	chr3	8983208	8983408	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19162.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.46	6.79	0.57	7.24	9.0	13.17	5.98	6.95	9.24	3.51	9.04	3.76
Merged-chr1-153790852-1	chr1	153790752	153790952	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 17 of 20)	intron (NM_001243223, intron 17 of 20)	41426.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	6.86	3.27	5.7	5.63	5.73	5.64	5.98	7.29	1.57	1.0	8.04	4.39
Merged-chr5-88518301-3	chr5	88518209	88518409	+	625.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	9588.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	6.86	8.55	17.11	5.23	6.55	5.64	5.65	6.98	6.29	4.02	5.53	4.39
Merged-chr5-114924763-2	chr5	114924622	114924822	+	625.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	B4|SINE|B4	1482.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.63	3.27	8.56	0.0	6.95	19.13	5.65	2.78	6.29	13.05	8.04	4.7
Merged-chr10-75516634-2	chr10	75516515	75516715	+	625.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	766.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.85	5.28	3.42	4.83	5.32	7.53	13.29	5.58	6.29	12.05	6.53	10.34
Merged-chr19-32949512-2	chr19	32949449	32949649	+	625.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	191972.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.04	3.52	5.7	7.24	7.36	8.47	5.98	4.37	9.24	12.55	6.03	1.25
Merged-chr8-94703004-3	chr8	94702890	94703090	+	625.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6748.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	8.88	14.09	7.99	4.02	6.55	8.15	4.98	3.76	8.06	8.54	11.56	5.33
Merged-chr13-24616770-2	chr13	24616656	24616856	+	625.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	2150.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	5.25	4.28	3.42	4.42	10.23	5.64	5.31	8.1	8.06	2.01	9.55	10.02
Merged-chr6-137577155-2	chr6	137576959	137577159	+	625.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-6050.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	1.62	3.02	1.71	2.01	4.09	1.88	3.99	6.06	3.15	2.01	4.52	8.14
Merged-chr8-70607576-2	chr8	70607473	70607673	+	625.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	741.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.27	5.28	2.28	7.64	4.5	5.64	5.31	4.68	8.65	5.02	4.02	5.33
Merged-chr2-83771646-1	chr2	83771546	83771746	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 12 of 29)	intron (NM_008402, intron 12 of 29)	-41082.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	6.06	6.54	3.42	7.24	8.59	1.25	4.32	7.01	5.9	3.51	7.54	4.39
Merged-chr9-16319171-2	chr9	16319080	16319280	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	59051.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	7.27	7.04	13.69	6.44	6.14	1.88	1.0	6.56	12.0	7.03	10.55	5.95
Merged-chr18-56874715-3	chr18	56874602	56874802	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	50846.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	4.04	5.79	3.42	8.85	5.73	2.2	9.97	4.63	3.54	2.51	9.04	8.77
Merged-chr7-81548930-1	chr7	81548830	81549030	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172904, exon 7 of 13)	exon (NM_172904, exon 7 of 13)	18051.0	NM_172904	244091.0	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	2.02	3.77	1.71	4.02	4.09	0.63	4.65	1.6	8.65	10.54	7.54	7.83
Merged-chr8-125518015-1	chr8	125517915	125518115	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25182.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.02	5.79	3.99	8.04	9.41	6.9	1.99	5.52	3.15	1.0	7.54	4.39
Merged-chr4-129671664-2	chr4	129671579	129671779	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008468, intron 1 of 13)	intron (NM_008468, intron 1 of 13)	1088.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	12.92	3.52	4.56	3.22	4.09	5.64	4.32	4.74	8.46	6.53	12.06	6.89
Merged-chr2-5705043-1	chr2	5704943	5705143	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	9719.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	1.51	4.56	0.8	1.23	4.39	4.98	5.5	2.16	3.51	4.02	2.51
Merged-chr11-70500418-1	chr11	70500318	70500518	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4856.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	3.23	2.77	3.99	3.62	8.59	11.92	4.32	2.58	3.74	6.03	2.01	3.45
Merged-chr2-3660127-1	chr2	3660027	3660227	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53331.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.27	6.29	3.42	3.22	7.77	5.64	3.99	5.27	5.51	3.01	6.53	6.58
Merged-chr14-55757755-1	chr14	55757655	55757855	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	669.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	5.65	0.25	1.71	3.22	6.55	11.6	3.65	4.54	3.93	8.54	4.52	2.82
Merged-chr13-44540643-1	chr13	44540543	44540743	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100916.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	7.27	3.77	2.85	0.8	9.41	8.15	5.31	2.86	9.64	4.02	8.54	1.25
Merged-chrX-77509993-1	chrX	77509893	77510093	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1234.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	3.23	3.52	10.27	3.62	3.27	15.99	1.99	5.44	7.67	6.53	12.56	3.13
Merged-chr10-96622912-1	chr10	96622812	96623012	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007569)	TTS (NM_007569)	5911.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	10.09	6.04	5.7	3.62	4.5	11.6	1.99	3.7	5.31	4.02	4.52	3.76
Merged-chr7-45798560-1	chr7	45798460	45798660	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290990, exon 12 of 15)	exon (NM_001290990, exon 12 of 15)	13180.0	NM_001290990	381983.0	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	8.88	10.06	1.71	1.21	0.82	0.94	0.33	2.92	2.56	1.51	4.02	5.95
Merged-chr8-117407672-1	chr8	117407572	117407772	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-45351.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	1.21	1.51	3.99	0.0	3.27	11.29	6.64	2.21	5.11	3.51	1.51	2.19
Merged-chr2-181436518-1	chr2	181436418	181436618	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	-12130.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	6.46	0.5	6.28	2.01	3.68	5.02	2.66	4.49	2.16	1.51	6.03	2.19
Merged-chr3-30843216-1	chr3	30843116	30843316	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-12734.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.4	6.29	5.7	8.04	0.82	1.25	3.99	6.34	6.29	1.0	5.53	1.88
Merged-chr14-9694956-1	chr14	9694856	9695056	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-189139.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.42	3.27	5.13	9.65	2.45	1.57	5.31	6.08	3.54	1.0	12.56	8.14
Merged-chr6-15860202-1	chr6	15860102	15860302	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139541.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.63	1.51	6.28	3.22	2.45	1.25	1.33	1.74	10.23	3.01	14.07	4.39
Merged-chr8-60891567-1	chr8	60891467	60891667	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151662, intron 1 of 2)	intron (NR_151662, intron 1 of 2)	1174.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.81	0.75	0.57	0.8	0.82	3.76	3.99	5.58	0.39	1.51	0.0	1.25
Merged-chr11-94994375-1	chr11	94994275	94994475	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3163.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	12.11	7.29	9.7	20.11	7.77	4.7	11.29	4.26	4.13	4.02	8.54	9.08
Merged-chr7-126772881-1	chr7	126772781	126772981	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-4094.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	1.01	2.28	0.4	2.45	1.88	4.98	5.36	1.77	0.0	1.0	0.0
Merged-chr4-137951869-1	chr4	137951769	137951969	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-41587.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.63	4.53	7.99	5.63	6.55	3.76	3.99	10.46	5.11	4.52	9.55	0.31
Merged-chr5-3968577-1	chr5	3968477	3968677	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194462, intron 7 of 47)	intron (NM_194462, intron 7 of 47)	40391.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	3.23	1.26	5.13	2.82	5.32	5.02	2.33	7.77	6.29	5.02	4.02	2.82
Merged-chr11-78189221-1	chr11	78189121	78189321	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_033475, exon 1 of 10)	5' UTR (NM_033475, exon 1 of 10)	473.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	4.85	7.04	6.28	2.01	2.45	3.14	1.0	4.29	6.49	5.02	3.01	6.58
Merged-chr4-58546829-1	chr4	58546729	58546929	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6464.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	1.62	1.51	4.56	7.24	2.45	1.25	1.66	1.26	9.24	8.03	15.58	6.27
Merged-chrX-74253805-1	chrX	74253705	74253905	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007927)	promoter-TSS (NM_007927)	-882.0	NM_007927	13726.0	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.0	0.75	4.56	0.8	4.5	5.33	1.33	1.77	5.31	5.02	15.58	6.27
Merged-chr9-90226043-1	chr9	90225943	90226143	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_194334, exon 6 of 13)	exon (NM_194334, exon 6 of 13)	44726.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.85	3.27	1.71	9.25	5.73	5.02	3.32	7.09	7.08	6.53	5.02	5.95
Merged-chr10-85957043-1	chr10	85956943	85957143	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145422, intron 1 of 11)	intron (NM_145422, intron 1 of 11)	750.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	2.83	1.51	3.42	0.8	1.64	3.14	6.64	4.4	5.9	4.52	8.54	4.07
Merged-chr3-116186621-2	chr3	116186524	116186724	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56936.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.46	2.01	6.85	10.46	5.73	3.14	2.66	10.04	11.8	14.06	8.04	10.02
Merged-chr10-34152093-1	chr10	34151993	34152193	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172508, exon 6 of 6)	3' UTR (NM_172508, exon 6 of 6)	-24121.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.81	1.51	6.85	1.61	1.64	5.64	1.33	5.78	3.15	6.03	5.02	0.0
Merged-chr5-143820833-1	chr5	143820733	143820933	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51029.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	2.83	4.28	5.13	6.84	5.32	4.7	3.32	4.18	4.92	6.03	8.54	0.94
Merged-chr5-100572268-1	chr5	100572168	100572368	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139198)	promoter-TSS (NM_139198)	-63.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.04	3.77	5.13	2.41	0.82	2.51	0.33	1.15	6.1	9.04	14.57	2.82
Merged-chr8-8499524-1	chr8	8499424	8499624	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	161249.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.4	1.01	0.0	0.0	0.41	4.08	5.98	6.45	6.69	1.51	5.02	0.63
Merged-chr1-53876834-1	chr1	53876734	53876934	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	27410.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	6.46	0.25	2.28	8.04	3.27	6.27	1.33	6.31	7.08	2.01	0.0	0.0
Merged-chr1-156465306-1	chr1	156465206	156465406	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	9022.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.83	1.01	8.56	0.8	4.91	5.33	5.65	6.84	0.0	1.0	4.52	0.0
Merged-chr4-102583522-1	chr4	102583422	102583622	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-4036.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.85	5.79	2.28	2.01	4.5	12.86	7.31	1.4	3.93	1.51	5.02	1.57
Merged-chr16-92445595-2	chr16	92445513	92445713	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	B3A|SINE|B2	20556.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	10.5	6.54	3.42	4.02	11.45	7.21	5.31	3.95	7.08	3.01	12.56	4.39
Merged-chr13-88730374-1	chr13	88730274	88730474	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-91098.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.65	7.29	6.28	9.25	2.45	1.88	7.97	4.23	7.28	6.53	8.54	2.51
Merged-chr7-88290774-1	chr7	88290674	88290874	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311790, exon 4 of 4)	3' UTR (NM_001311790, exon 4 of 4)	12689.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.23	9.31	5.7	1.61	4.09	5.02	3.99	3.93	9.64	6.03	9.04	2.51
Merged-chr12-54192177-1	chr12	54192077	54192277	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028133, intron 1 of 4)	intron (NM_028133, intron 1 of 4)	11697.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	3.23	2.26	10.27	3.22	5.32	7.21	1.66	5.13	3.15	1.0	7.54	1.57
Merged-chr14-47165306-1	chr14	47165206	47165406	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008102, intron 3 of 5)	intron (NM_008102, intron 3 of 5)	24107.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	4.04	2.01	1.14	1.21	7.36	7.53	2.66	5.41	0.2	0.0	0.0	1.57
Merged-chr11-119729521-1	chr11	119729421	119729621	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028898, intron 4 of 33)	intron (NM_028898, intron 4 of 33)	104844.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	5.65	1.01	7.99	5.63	8.18	0.0	0.66	5.89	5.51	1.51	3.52	2.82
Merged-chr7-102553481-1	chr7	102553381	102553581	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_147101)	promoter-TSS (NM_147101)	-805.0	NM_147101	259105.0	Mm.424092	NM_147101	ENSMUSG00000073977	Olfr549	MOR31-3	olfactory receptor 549	protein-coding	5.25	3.52	5.7	4.02	2.86	5.64	3.32	9.0	1.38	3.51	3.01	0.0
Merged-chr6-37355070-1	chr6	37354970	37355170	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178661, intron 6 of 11)	MIR3|SINE|MIR	-55094.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.23	2.77	2.28	2.41	6.55	3.45	2.66	5.19	4.13	7.03	5.53	8.14
Merged-chr2-59162360-1	chr2	59162260	59162460	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	1510.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	1.21	1.76	9.7	7.64	5.73	5.96	8.3	12.79	8.06	4.52	19.6	2.82
Merged-chr2-38646177-1	chr2	38646077	38646277	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2271.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	4.85	6.04	1.14	2.82	2.86	1.25	3.99	5.64	1.77	3.01	6.53	4.39
Merged-chr9-109862707-1	chr9	109862607	109862807	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12872.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	3.23	6.04	2.28	6.03	7.36	1.88	3.65	4.85	3.15	2.01	3.52	5.33
Merged-chr10-78295190-2	chr10	78295103	78295303	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	45004.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	4.04	3.77	5.13	8.04	6.55	8.78	9.63	4.51	1.97	7.53	4.52	2.19
Merged-chr4-32366371-1	chr4	32366271	32366471	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-51064.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.65	3.02	0.0	9.25	4.91	2.51	7.31	9.95	3.34	0.0	2.51	0.31
Merged-chr11-21237292-1	chr11	21237192	21237392	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1740.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	1.62	3.27	1.71	6.44	4.09	5.96	7.31	4.23	3.93	8.03	2.51	7.21
Merged-chr7-4148474-1	chr7	4148374	4148574	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172736)	TTS (NM_172736)	1398.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	6.86	5.03	7.42	7.64	4.5	6.59	2.33	4.21	5.9	9.54	3.52	6.27
Merged-chr6-48429106-1	chr6	48429006	48429206	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	15984.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	3.63	1.26	7.42	5.23	4.09	7.21	4.98	6.2	4.92	4.02	1.51	4.39
Merged-chr2-126594094-1	chr2	126593994	126594194	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008230, exon 12 of 12)	exon (NM_008230, exon 12 of 12)	24584.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	6.06	4.28	6.85	3.62	6.14	7.84	5.31	3.17	4.72	4.52	12.06	5.33
Merged-chr5-75028414-1	chr5	75028314	75028514	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	16227.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	3.23	2.52	4.56	5.63	1.23	0.94	4.65	5.13	0.39	7.03	5.02	1.25
Merged-chr16-36940900-1	chr16	36940800	36941000	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5917.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	4.04	4.28	1.14	0.8	1.64	8.47	1.99	3.98	4.13	3.01	1.51	1.88
Merged-chr5-73633312-1	chr5	73633212	73633412	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153568)	promoter-TSS (NM_153568)	-891.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	8.88	4.28	1.14	8.85	4.91	7.84	1.66	8.92	7.47	6.53	2.01	7.52
Merged-chr12-32799815-1	chr12	32799715	32799915	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-20520.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	10.5	7.04	13.12	2.41	1.64	2.82	5.31	2.3	8.46	7.03	4.02	4.7
Merged-chr10-19167871-1	chr10	19167771	19167971	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	633.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	8.08	2.77	6.28	2.82	12.68	8.78	2.99	2.44	4.52	7.03	8.54	3.76
Merged-chr5-86887843-1	chr5	86887743	86887943	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	19094.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.0	0.5	0.0	1.61	2.86	1.88	5.65	10.43	3.15	0.5	9.55	1.57
Merged-chr10-59221011-1	chr10	59220911	59221111	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	836.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	9.29	4.78	5.7	2.41	1.64	5.64	6.31	6.48	7.08	11.55	9.04	3.76
Merged-chr6-47836216-1	chr6	47836116	47836316	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173034, intron 1 of 4)	CpG	555.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	13.73	13.58	5.7	21.72	16.36	9.09	15.28	9.84	4.72	4.52	14.57	4.07
Merged-chr5-140510755-1	chr5	140510655	140510855	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	5146.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	4.44	5.28	5.7	4.02	4.5	5.64	3.65	4.96	9.64	5.52	3.52	5.95
Merged-chr2-174043730-1	chr2	174043630	174043830	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-33321.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	2.02	8.8	5.13	8.85	1.64	0.63	2.33	1.18	0.59	2.01	4.52	1.57
Merged-chr7-75456127-1	chr7	75456027	75456227	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029332, intron 1 of 36)	CpG	593.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	9.29	4.53	13.12	5.23	6.55	8.47	10.63	10.07	4.33	7.03	9.55	5.33
Merged-chr15-51585965-1	chr15	51585865	51586065	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-190355.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	2.83	3.27	5.13	3.22	2.86	4.08	5.31	5.78	4.13	1.0	1.51	1.57
Merged-chr1-82840057-1	chr1	82839957	82840157	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310713, intron 1 of 11)	CpG	597.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	4.85	4.78	3.42	2.41	4.91	5.33	12.29	6.45	4.92	12.05	11.05	7.21
Merged-chr6-72142770-1	chr6	72142670	72142870	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-19573.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.4	1.26	1.14	0.4	0.0	0.0	6.64	6.06	2.75	3.01	5.02	2.82
Merged-chr12-112917732-1	chr12	112917632	112917832	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010588, intron 5 of 25)	intron (NM_010588, intron 5 of 25)	2809.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	9.13	1.61	5.73	5.96	5.31	5.02	1.97	3.51	1.0	0.0
Merged-chr10-118862917-2	chr10	118862819	118863019	+	624.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5984.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.67	3.52	6.85	4.83	11.05	5.64	9.3	6.34	6.88	10.54	0.5	4.7
Merged-chr13-58034709-3	chr13	58034611	58034811	+	624.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-11511.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	8.48	10.56	12.55	18.9	6.14	4.39	5.98	15.95	7.87	5.52	12.06	2.82
Merged-chr9-58274077-2	chr9	58274129	58274329	+	624.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	21065.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	1.01	0.0	1.21	4.09	1.57	0.0	1.07	0.0	1.0	1.51	3.45
Merged-chr18-11839970-1	chr18	11839870	11840070	+	624.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	468.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	7.27	8.3	0.57	6.44	11.86	8.78	13.95	13.74	9.44	6.03	11.56	7.21
Merged-chr7-66225169-1	chr7	66225069	66225269	+	624.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	115654.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	10.09	6.04	6.85	8.04	5.73	3.45	0.66	0.87	2.56	5.52	3.01	7.83
Merged-chr3-9334392-1	chr3	9334292	9334492	+	624.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68686.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	8.88	3.27	6.28	2.01	6.95	1.57	6.64	4.71	2.95	3.01	6.03	2.19
Merged-chr7-92740695-2	chr7	92740618	92740818	+	624.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	741.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	6.46	1.51	5.7	2.01	10.64	14.74	4.98	5.05	7.67	7.03	12.06	9.08
Merged-chr8-25089741-2	chr8	25089635	25089835	+	624.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	12076.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	8.08	8.55	9.13	5.23	4.09	5.02	5.65	6.59	7.47	9.04	5.02	3.13
Merged-chr10-115252508-3	chr10	115252355	115252555	+	624.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	-962.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	3.63	8.55	7.42	3.22	5.73	3.76	6.98	4.29	6.1	2.51	3.52	4.7
Merged-chrX-12873436-1	chrX	12873336	12873536	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-63437.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	0.0	1.01	2.85	0.0	7.77	7.53	2.99	5.86	4.33	11.05	4.02	2.82
Merged-chr1-7077969-1	chr1	7077869	7078069	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-10951.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.88	1.51	1.14	2.41	6.55	5.02	4.65	6.64	1.77	0.5	2.51	0.31
Merged-chr2-129600044-2	chr2	129599941	129600141	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4579.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	11.31	9.06	5.7	1.21	3.68	8.15	2.99	3.84	7.87	5.02	1.0	9.71
Merged-chr7-98311602-1	chr7	98311502	98311702	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	B4|SINE|B4	-2060.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	2.42	1.51	7.99	2.01	6.55	2.82	5.31	3.98	5.31	2.01	3.52	4.07
Merged-chr11-69124663-2	chr11	69124569	69124769	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-1708.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	6.46	7.55	2.28	3.22	6.95	11.6	3.99	2.44	12.39	9.54	1.0	5.33
Merged-chr17-8883227-2	chr17	8883126	8883326	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	33241.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	8.88	2.26	13.12	8.04	4.91	1.88	5.31	8.38	9.05	1.0	5.53	1.88
Merged-chr9-123991717-1	chr9	123991617	123991817	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13309.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	6.46	3.02	10.84	8.04	6.14	7.84	3.99	8.3	7.67	1.51	7.54	4.07
Merged-chr19-56459528-1	chr19	56459428	56459628	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-2109.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	1.62	1.51	1.14	5.23	0.0	3.76	7.64	5.72	1.57	4.52	5.53	4.07
Merged-chr5-29230678-2	chr5	29230591	29230791	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_020295, exon 17 of 17)	3' UTR (NM_020295, exon 17 of 17)	34698.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	3.23	4.02	6.28	7.24	5.73	1.25	2.66	5.13	9.44	3.01	5.53	6.27
Merged-chr13-99152465-1	chr13	99152365	99152565	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32358.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	2.83	2.01	5.7	4.42	3.68	4.7	4.65	8.1	3.15	2.01	2.51	4.7
Merged-chr15-102395210-2	chr15	102395127	102395327	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11089.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	3.23	1.26	1.14	2.01	7.77	3.76	5.65	6.98	6.88	7.53	6.53	9.4
Merged-chr15-84631746-1	chr15	84631646	84631846	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31460.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	9.29	2.01	9.7	2.41	4.91	1.57	3.32	5.21	7.67	3.51	5.53	1.57
Merged-chr7-119868284-1	chr7	119868184	119868384	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	27174.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	7.27	4.53	4.56	4.83	6.14	8.78	3.32	4.68	8.06	4.02	3.52	2.82
Merged-chr7-43276341-1	chr7	43276241	43276441	+	624.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31M|LTR|ERVK	36959.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.85	9.06	2.28	4.02	5.73	7.84	3.32	5.72	10.82	13.56	13.57	1.57
Merged-chr1-191131493-2	chr1	191131391	191131591	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33077.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	8.48	8.05	5.13	2.01	6.55	13.48	3.99	5.64	1.57	1.51	3.01	7.21
Merged-chr6-86694671-1	chr6	86694571	86694771	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011818, intron 13 of 13)	intron (NM_011818, intron 13 of 13)	-10180.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.81	2.01	2.28	0.8	6.55	6.27	1.33	5.19	5.9	5.02	5.02	2.82
Merged-chr1-149843579-2	chr1	149843481	149843681	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 15 of 17)	MTD|LTR|ERVL-MaLR	78858.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.67	8.3	19.4	7.24	6.14	4.39	1.99	3.7	9.64	9.04	8.54	6.58
Merged-chr10-117335789-2	chr10	117335687	117335887	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	41186.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	9.29	6.79	6.28	5.23	11.05	8.78	5.65	3.76	4.92	7.53	10.55	10.96
Merged-chr13-74000738-1	chr13	74000638	74000838	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8681.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.23	3.77	10.27	4.42	4.5	5.64	2.99	5.13	10.82	1.0	5.53	3.13
Merged-chr14-122079635-3	chr14	122079553	122079753	+	624.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27321.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	3.63	9.81	8.56	2.41	5.73	7.84	2.33	15.25	12.98	7.03	10.55	7.52
Merged-chr7-101321493-3	chr7	101321387	101321587	+	624.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019990, intron 1 of 6)	CpG	374.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	8.08	6.29	6.28	4.42	7.36	4.7	3.99	5.3	8.06	6.53	8.04	4.39
Merged-chr11-100736236-3	chr11	100736114	100736314	+	624.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2001.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	12.11	4.78	9.13	10.46	11.45	7.21	3.65	5.55	7.28	5.52	12.06	8.77
Merged-chr2-144214683-3	chr2	144214612	144214812	+	624.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25422.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.46	4.02	7.99	4.83	14.32	9.09	4.32	4.6	12.0	4.52	11.05	6.58
Merged-chr7-101302772-2	chr7	101302664	101302864	+	624.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	-676.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	8.48	8.8	9.13	3.22	4.5	13.17	5.98	1.93	10.03	8.03	8.04	5.33
Merged-chr1-176825915-3	chr1	176825808	176826008	+	624.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 2 of 18)	intron (NM_001357390, intron 2 of 18)	10225.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	7.27	6.29	1.71	5.23	11.86	4.08	3.32	6.56	5.7	7.03	11.56	11.9
Merged-chr19-61151820-1	chr19	61151720	61151920	+	624.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10980.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.0	3.52	1.14	0.0	4.09	1.88	2.33	0.39	6.49	9.04	14.07	6.89
Merged-chr10-17294593-2	chr10	17294491	17294691	+	624.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198809.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.02	7.04	9.13	10.86	4.5	4.39	6.31	5.47	5.51	4.02	9.04	3.13
Merged-chr14-75064767-2	chr14	75064665	75064865	+	624.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	48738.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.44	3.77	6.28	5.23	1.64	2.82	4.32	3.25	10.62	13.05	11.05	6.58
Merged-chr2-32502063-3	chr2	32501971	32502171	+	624.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33288.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	8.48	5.53	4.56	6.03	8.18	5.96	2.99	6.36	9.24	6.03	12.06	15.04
Merged-chr17-34619192-3	chr17	34619117	34619317	+	624.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	-3246.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	9.69	6.54	5.7	12.47	13.09	6.59	0.0	3.79	6.69	7.53	7.54	9.08
Merged-chr14-26502852-3	chr14	26502750	26502950	+	624.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	L1_Mur2|LINE|L1	31774.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	12.52	5.03	5.13	5.63	6.95	11.92	7.31	5.75	9.05	5.02	11.56	2.82
Merged-chrX-56454408-1	chrX	56454308	56454508	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172779)	promoter-TSS (NM_172779)	-431.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	5.65	2.01	3.42	0.8	4.09	4.08	7.97	5.83	3.93	1.51	5.02	4.07
Merged-chr4-86925258-1	chr4	86925158	86925358	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290543, intron 5 of 5)	intron (NM_001290543, intron 5 of 5)	50844.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.65	3.02	5.7	3.22	4.5	5.02	3.32	4.77	4.13	3.51	6.03	1.25
Merged-chr12-73587555-1	chr12	73587455	73587655	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	2759.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	2.83	3.27	1.14	4.02	2.45	5.02	7.97	5.3	6.49	2.01	6.53	0.94
Merged-chr17-78733656-1	chr17	78733556	78733756	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	2904.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	4.04	2.26	9.13	5.63	2.45	7.21	8.64	5.13	4.33	5.52	9.04	5.01
Merged-chr4-31936769-1	chr4	31936669	31936869	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27338.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.86	7.04	1.14	8.45	6.95	1.57	3.65	4.04	5.11	4.02	2.01	0.31
Merged-chr17-53990060-1	chr17	53989960	53990160	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018751, intron 1 of 7)	intron (NM_018751, intron 1 of 7)	571.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	3.23	5.03	5.13	3.22	2.86	5.64	2.99	5.75	1.97	0.5	4.02	1.88
Merged-chr16-24778542-2	chr16	24778441	24778641	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	56686.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	1.62	2.01	6.28	2.01	5.32	6.59	0.66	7.07	9.83	5.02	6.03	8.14
Merged-chr8-13965088-1	chr8	13964988	13965188	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	9689.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	5.65	4.28	5.13	7.24	8.59	2.2	16.28	5.07	7.28	6.53	7.54	6.27
Merged-chr13-98968183-1	chr13	98968083	98968283	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16382.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	2.83	3.77	2.28	1.61	6.14	6.59	8.3	4.51	5.51	12.55	3.52	3.45
Merged-chr12-8494319-1	chr12	8494219	8494419	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	5690.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.02	5.03	11.41	7.24	10.23	8.15	3.32	4.99	3.74	7.53	2.01	2.51
Merged-chr8-64945865-1	chr8	64945765	64945965	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1320.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	6.46	2.77	3.99	0.8	6.14	3.45	2.33	7.32	4.92	12.05	10.05	7.21
Merged-chr8-84650202-1	chr8	84650102	84650302	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12650.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	12.52	5.79	0.57	2.82	6.55	1.88	3.99	2.3	0.98	2.51	3.01	2.19
Merged-chr18-34007370-1	chr18	34007270	34007470	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013512)	promoter-TSS (NM_013512)	-164.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	9.29	7.04	1.71	5.23	5.32	3.76	5.98	1.57	2.36	1.0	1.0	2.19
Merged-chr9-105479972-1	chr9	105479872	105480072	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	L1M3|LINE|L1	15161.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	4.85	1.01	6.28	2.01	6.14	3.76	0.66	7.07	4.52	3.01	5.53	3.13
Merged-chr13-20493888-2	chr13	20493781	20493981	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	20891.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.23	4.02	11.98	4.83	6.55	5.64	6.31	11.07	9.24	8.54	7.03	4.39
Merged-chr1-164316888-1	chr1	164316788	164316988	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178071, intron 3 of 9)	intron (NM_178071, intron 3 of 9)	9216.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.81	1.01	2.28	4.42	6.55	5.64	1.66	3.62	15.14	6.03	10.05	4.7
Merged-chr13-94977506-1	chr13	94977406	94977606	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	1162.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	3.23	1.76	3.99	0.8	4.91	4.7	1.99	4.12	3.34	4.02	4.52	6.89
Merged-chr7-67305155-1	chr7	67305055	67305255	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 3 of 11)	B4A|SINE|B4	67703.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.81	2.26	6.28	4.42	6.55	6.59	5.98	4.15	4.52	7.03	5.53	1.25
Merged-chr17-35381792-1	chr17	35381692	35381892	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	2175.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	6.06	7.04	8.56	4.42	5.32	6.9	2.66	1.43	3.15	1.0	2.51	0.63
Merged-chr5-125340082-2	chr5	125339949	125340149	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1045.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.04	8.3	0.57	2.41	4.91	5.33	5.65	4.96	5.7	5.52	13.06	7.52
Merged-chr5-21384317-1	chr5	21384217	21384417	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11644.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.65	1.26	0.0	1.21	2.05	0.94	6.64	4.88	4.72	1.51	4.02	0.63
Merged-chr14-16364230-1	chr14	16364130	16364330	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-976.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	12.92	7.8	9.7	9.25	4.09	5.33	11.29	4.99	9.24	17.07	4.52	4.39
Merged-chr6-72095401-1	chr6	72095301	72095501	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2207.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	2.42	1.01	0.0	8.04	2.45	3.76	4.65	4.4	4.13	5.02	6.03	3.45
Merged-chr8-10170099-1	chr8	10169999	10170199	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	16188.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.81	1.76	1.14	1.21	4.5	2.82	3.99	6.5	8.46	6.53	8.54	5.64
Merged-chr10-12699139-1	chr10	12699039	12699239	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	162596.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.81	6.04	2.28	0.0	0.0	2.2	0.0	3.95	5.7	11.05	13.06	4.39
Merged-chr5-129594266-1	chr5	129594166	129594366	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	10097.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	2.02	3.27	3.42	2.41	2.05	5.64	4.98	5.02	2.95	5.02	3.52	1.88
Merged-chr2-158340378-1	chr2	158340278	158340478	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21131.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	1.62	3.27	5.13	5.63	4.91	6.9	1.0	6.87	5.51	9.04	8.54	3.13
Merged-chrX-142527109-1	chrX	142527009	142527209	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-136574.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.0	1.26	4.56	1.61	4.5	9.72	4.65	4.74	4.52	4.02	10.55	1.88
Merged-chr10-95291790-1	chr10	95291690	95291890	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	31919.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.44	3.77	2.85	4.42	6.95	3.76	1.99	5.78	7.87	4.52	6.03	4.07
Merged-chrX-155163754-1	chrX	155163654	155163854	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15905.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	4.85	3.27	0.0	2.01	1.64	4.39	1.33	6.53	6.29	3.01	8.54	5.95
Merged-chr13-69431240-1	chr13	69431140	69431340	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45A|DNA|hAT-Tip100	102624.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	0.0	1.14	0.0	0.0	0.0	0.0	1.01	11.01	5.02	3.01	6.58
Merged-chr11-98414250-1	chr11	98414150	98414350	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003817, intron 1 of 26)	intron (NM_001003817, intron 1 of 26)	1766.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	2.83	8.3	5.13	6.44	4.09	7.84	5.65	6.53	6.29	1.51	3.01	3.13
Merged-chrX-142229021-1	chrX	142228921	142229121	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290533, intron 1 of 3)	intron (NM_001290533, intron 1 of 3)	318.0	NM_001290533	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	7.27	4.28	13.69	2.41	9.41	1.57	4.98	7.51	4.72	4.02	9.04	2.82
Merged-chr2-9877464-1	chr2	9877364	9877564	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008091, exon 2 of 6)	exon (NM_008091, exon 2 of 6)	1136.0	NM_001355110	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	2.02	8.05	0.0	4.42	8.59	3.14	1.99	7.91	1.97	2.51	3.52	4.07
Merged-chr9-32542471-1	chr9	32542371	32542571	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1019.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.63	6.79	6.85	10.46	2.05	5.96	3.32	3.9	5.31	3.51	5.53	5.01
Merged-chr17-57029841-2	chr17	57029725	57029925	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	1682.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	2.42	9.06	2.85	3.22	2.05	2.82	1.66	5.44	4.13	15.57	13.57	5.33
Merged-chr3-84946570-1	chr3	84946470	84946670	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-5641.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.02	5.53	10.27	4.83	2.05	3.76	1.99	3.48	3.93	7.03	6.03	10.34
Merged-chr2-162922312-1	chr2	162922212	162922412	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9196.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	2.42	12.32	7.42	9.25	6.95	4.39	0.33	5.05	8.26	5.02	6.53	5.33
Merged-chr18-36196690-1	chr18	36196590	36196790	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001167891, exon 1 of 10)	exon (NM_001167891, exon 1 of 10)	470.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	4.44	4.28	1.14	0.4	6.14	4.08	4.65	1.77	5.11	6.03	6.03	6.89
Merged-chr2-3659662-1	chr2	3659562	3659762	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53796.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.63	3.27	0.0	3.22	5.32	6.9	5.65	3.36	7.08	9.54	6.03	4.7
Merged-chr2-129544808-1	chr2	129544708	129544908	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8206.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	1.21	4.28	2.28	0.8	9.82	4.7	3.99	5.16	1.18	0.5	0.5	1.57
Merged-chr4-132586388-1	chr4	132586288	132586488	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	22321.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	12.11	6.54	2.28	0.8	7.77	5.96	3.32	3.08	4.72	3.01	1.51	2.19
Merged-chr2-22928429-2	chr2	22928335	22928535	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149721, intron 7 of 10)	intron (NR_149721, intron 7 of 10)	32913.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	6.86	7.8	1.14	8.45	3.68	3.76	3.99	5.21	5.9	10.04	13.57	4.07
Merged-chr10-70021947-1	chr10	70021847	70022047	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170729, intron 40 of 40)	intron (NM_170729, intron 40 of 40)	-75174.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.81	2.01	2.28	2.41	2.05	6.27	0.33	5.19	4.52	4.52	0.5	4.07
Merged-chr18-5085230-1	chr18	5085130	5085330	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347449, intron 11 of 30)	intron (NM_001347449, intron 11 of 30)	38641.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	2.83	4.02	2.28	2.01	6.14	3.45	6.31	4.93	5.31	7.03	1.0	5.33
Merged-chr11-98597509-1	chr11	98597409	98597609	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001195544)	promoter-TSS (NM_001195544)	-782.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	6.86	5.53	2.85	4.02	1.64	7.84	0.33	6.95	3.34	12.05	7.03	5.33
Merged-chr6-145116542-1	chr6	145116442	145116642	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281980, intron 1 of 18)	intron (NM_001281980, intron 1 of 18)	906.0	NM_001281981	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.85	3.02	2.28	6.44	7.77	7.21	3.99	3.42	10.23	5.02	6.03	9.71
Merged-chr7-89372152-1	chr7	89372052	89372252	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	32070.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.23	3.52	1.14	2.82	0.82	6.9	1.0	5.38	0.79	3.51	2.01	4.07
Merged-chr10-37262575-2	chr10	37262467	37262667	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-123641.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.27	2.77	1.71	2.41	3.27	4.08	7.31	5.44	7.47	10.54	3.52	3.76
Merged-chr4-155700579-1	chr4	155700479	155700679	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4236.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	3.23	7.29	1.14	0.8	4.91	4.08	7.31	2.19	9.24	8.54	8.54	6.58
Merged-chr11-83224007-1	chr11	83223907	83224107	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015519, intron 1 of 3)	intron (NR_015519, intron 1 of 3)	431.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.81	3.27	0.0	2.41	3.68	5.64	2.66	4.15	9.05	7.03	5.02	6.89
Merged-chr3-116211021-1	chr3	116210921	116211121	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42463.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	1.62	4.02	0.0	1.61	11.05	6.9	3.99	5.27	5.7	3.51	4.52	7.21
Merged-chr4-7455324-1	chr4	7455224	7455424	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105364.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	2.02	1.01	0.0	0.8	6.14	1.88	4.98	5.38	7.87	6.03	8.04	3.45
Merged-chr1-59483271-1	chr1	59483171	59483371	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1124.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.63	3.02	5.13	2.41	3.27	1.57	8.64	5.36	5.9	3.51	3.52	8.14
Merged-chr8-68187502-1	chr8	68187402	68187602	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-89026.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	8.48	2.77	4.56	4.83	5.73	4.39	1.66	6.93	6.29	1.0	1.0	0.94
Merged-chr11-87143646-1	chr11	87143546	87143746	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197987, intron 5 of 23)	intron (NM_197987, intron 5 of 23)	16571.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	5.25	3.02	2.28	4.42	3.27	8.15	1.99	2.55	5.51	4.02	13.06	8.14
Merged-chr8-77388410-1	chr8	77388310	77388510	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 11 of 22)	intron (NM_030113, intron 11 of 22)	-128646.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	4.44	4.78	1.14	9.65	2.86	4.39	5.65	5.27	4.52	5.02	5.02	4.7
Merged-chr7-130517166-2	chr7	130517075	130517275	+	623.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271343, intron 1 of 11)	MTD|LTR|ERVL-MaLR	2405.0	NM_001136054	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	8.08	8.3	10.27	10.46	2.05	4.08	3.32	8.33	12.19	6.53	12.06	8.46
Merged-chr4-130915523-3	chr4	130915431	130915631	+	623.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2197.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.46	7.29	6.28	7.64	13.91	4.7	3.65	5.66	6.49	5.52	9.04	6.58
Merged-chr2-52785280-3	chr2	52785179	52785379	+	623.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43130.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	8.08	9.56	9.13	6.84	4.5	9.09	5.31	11.92	6.1	2.01	12.06	8.14
Merged-chr19-9984130-1	chr19	9984030	9984230	+	623.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073181, intron 2 of 4)	intron (NR_073181, intron 2 of 4)	1484.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	2.42	5.79	3.42	2.82	4.09	7.84	4.65	4.29	7.87	5.52	4.52	3.13
Merged-chr15-97247887-3	chr15	97247770	97247970	+	623.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-583.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.85	6.04	12.55	8.85	4.5	7.84	10.63	10.04	7.47	0.5	4.02	5.01
Merged-chr19-40965424-1	chr19	40965324	40965524	+	623.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008528, intron 3 of 16)	intron (NM_008528, intron 3 of 16)	29111.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	2.83	8.3	4.56	0.4	9.41	7.84	8.3	2.64	6.1	13.56	4.02	4.7
Merged-chr4-124738920-3	chr4	124738833	124739033	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151694, intron 3 of 3)	intron (NR_151694, intron 3 of 3)	-2917.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	6.86	1.51	17.11	14.48	7.77	7.53	10.3	4.99	7.87	11.05	8.04	9.4
Merged-chr2-120660642-3	chr2	120660555	120660755	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51060.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	2.02	2.77	10.27	10.46	6.14	4.7	4.98	7.71	7.87	8.54	10.05	12.84
Merged-chr13-59820324-3	chr13	59820216	59820416	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	2831.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	10.9	6.04	4.56	4.42	11.05	6.9	5.31	3.98	14.36	7.53	12.06	4.07
Merged-chr2-128769250-1	chr2	128769150	128769350	+	623.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	RLTR11B|LTR|ERVK	-49053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.62	4.28	4.56	4.02	12.27	3.76	4.65	6.08	7.08	7.53	5.02	5.64
Merged-chr5-31772755-1	chr5	31772655	31772855	+	623.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	L1ME1|LINE|L1	74705.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.85	4.02	3.99	7.24	7.77	8.47	2.66	4.99	9.44	8.54	7.03	6.58
Merged-chr17-65769591-3	chr17	65769433	65769633	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	3219.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.65	6.04	2.28	3.62	6.14	3.76	1.99	1.77	5.7	11.55	6.53	3.13
Merged-chr10-91208702-2	chr10	91208615	91208815	+	623.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151510, exon 4 of 4)	non-coding (NR_151510, exon 4 of 4)	11904.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	3.23	2.52	4.56	0.0	7.77	7.53	1.0	5.38	10.03	2.51	4.02	6.58
Merged-chr1-182494746-2	chr1	182494647	182494847	+	623.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	22863.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	10.5	7.8	23.96	7.24	4.91	9.41	7.31	5.58	5.11	3.51	0.5	2.82
Merged-chr5-43290070-2	chr5	43289978	43290178	+	623.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175937)	TTS (NM_175937)	-54724.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	8.48	7.55	4.56	13.67	8.18	10.03	9.3	6.56	3.54	2.01	3.01	9.71
Merged-chr8-127780779-2	chr8	127780694	127780894	+	623.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	481142.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	4.44	3.77	10.84	10.86	4.91	5.96	5.65	12.98	10.62	13.56	6.03	6.58
Merged-chr4-122902329-3	chr4	122902219	122902419	+	623.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-16243.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.04	6.04	11.98	3.22	10.23	10.66	6.31	5.66	7.87	9.04	18.09	7.52
Merged-chr5-68012872-3	chr5	68012768	68012968	+	623.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18967.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	8.08	8.55	7.99	4.42	6.55	9.09	1.66	7.21	8.06	11.05	17.08	11.28
Merged-chr10-55096356-1	chr10	55096256	55096456	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1010561.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	7.67	6.04	2.28	3.62	4.5	2.82	5.31	4.49	3.74	2.51	2.51	4.07
Merged-chr14-66869720-2	chr14	66869631	66869831	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001034881, exon 1 of 1)	3' UTR (NM_001034881, exon 1 of 1)	881.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	7.27	1.76	10.27	3.22	7.36	4.08	2.33	6.73	11.41	13.56	6.03	4.7
Merged-chr11-113619339-1	chr11	113619239	113619439	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009217)	promoter-TSS (NM_009217)	-142.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0.0	5.53	2.28	2.41	6.55	5.02	12.29	7.15	11.01	6.03	7.54	3.45
Merged-chr13-104153022-1	chr13	104152922	104153122	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25444.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	3.23	2.26	5.7	4.42	6.55	5.96	3.32	4.07	0.2	1.0	0.0	0.63
Merged-chr18-4346410-3	chr18	4346370	4346570	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	6483.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	2.02	5.03	2.28	6.03	10.23	1.25	6.31	3.59	2.95	7.03	5.02	3.13
Merged-chr1-178335269-1	chr1	178335169	178335369	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149827, intron 3 of 16)	intron (NR_149827, intron 3 of 16)	2546.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	2.83	2.26	0.0	4.83	2.45	6.59	3.99	3.34	1.38	6.03	3.52	6.89
Merged-chr19-55766101-2	chr19	55766000	55766200	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	24290.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	9.29	13.33	11.98	0.8	7.77	17.56	7.97	3.64	10.03	5.52	8.54	3.45
Merged-chr2-11218333-2	chr2	11218216	11218416	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	45934.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	2.02	2.01	9.13	6.84	6.14	6.27	5.65	5.47	9.24	5.52	9.55	5.33
Merged-chr3-121536885-1	chr3	121536785	121536985	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4541.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	7.27	4.78	1.14	3.62	4.91	4.7	5.31	5.33	0.98	5.52	8.54	5.33
Merged-chr6-129747531-2	chr6	129747427	129747627	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7043.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	4.04	8.05	7.42	7.64	6.55	3.45	3.32	8.3	4.13	1.51	4.02	1.25
Merged-chr8-40285896-1	chr8	40285796	40285996	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030610, intron 1 of 2)	intron (NM_030610, intron 1 of 2)	1057.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.4	4.02	2.85	4.02	5.73	7.84	3.32	4.99	1.57	0.0	2.01	1.57
Merged-chr5-134374120-2	chr5	134374014	134374214	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	47660.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	6.46	2.77	3.42	10.05	1.64	8.47	7.97	8.83	7.47	10.54	11.56	7.52
Merged-chr17-26649742-1	chr17	26649642	26649842	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-26654.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	1.21	1.51	7.99	3.22	5.73	4.7	3.32	4.85	4.92	4.02	7.54	7.83
Merged-chr10-95590415-1	chr10	95590315	95590515	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26269.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	1.62	0.0	1.14	0.0	10.64	5.02	1.33	5.52	0.0	1.0	0.0	0.31
Merged-chr2-101653048-1	chr2	101652948	101653148	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3516.0	NM_009019	19373.0	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	4.04	0.0	9.7	7.24	4.91	5.33	0.0	7.12	9.83	9.54	14.07	8.46
Merged-chr11-97838902-2	chr11	97838817	97839017	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010688)	TTS (NM_010688)	-1863.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.02	5.53	0.57	4.02	2.45	5.33	3.32	6.22	8.26	13.05	3.52	5.64
Merged-chr18-73844541-2	chr18	73844436	73844636	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14849.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	4.44	2.52	1.14	3.22	7.36	5.64	4.32	5.55	8.26	10.54	6.53	5.33
Merged-chr10-59310304-2	chr10	59310205	59310405	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12991.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.63	6.04	4.56	9.65	4.09	2.2	2.99	7.43	2.75	7.53	10.05	5.33
Merged-chr12-108639923-1	chr12	108639823	108640023	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	4170.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.81	3.77	3.42	3.22	2.86	4.7	6.64	4.71	7.47	3.51	4.52	6.27
Merged-chr19-57925085-2	chr19	57924996	57925196	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 26 of 28)	intron (NM_181415, intron 26 of 28)	-126071.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	4.04	10.06	8.56	6.84	9.82	5.02	6.64	6.98	3.34	2.51	5.02	2.82
Merged-chr7-111478299-1	chr7	111478199	111478399	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360903, intron 10 of 10)	intron (NM_001360903, intron 10 of 10)	301678.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	2.02	3.52	3.99	1.21	6.95	10.66	7.31	2.3	1.77	3.01	6.53	4.7
Merged-chr13-41662869-1	chr13	41662769	41662969	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56653.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.63	1.76	3.99	0.8	5.73	6.27	1.99	4.07	2.16	4.52	1.51	1.88
Merged-chr16-35872152-1	chr16	35872052	35872252	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-770.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	3.63	3.02	1.14	2.41	5.73	10.35	0.66	4.85	3.93	4.52	2.01	1.88
Merged-chr1-132194876-3	chr1	132194754	132194954	+	623.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-3234.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	4.85	7.8	11.98	4.42	4.91	11.92	7.31	3.42	17.11	5.02	10.05	6.27
Merged-chr13-99339369-1	chr13	99339269	99339469	+	623.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	5309.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	1.21	0.5	0.57	1.21	2.45	2.51	1.33	0.76	9.64	5.02	12.06	10.34
Merged-chr6-128754468-1	chr6	128754368	128754568	+	623.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31422.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	2.42	2.26	3.42	9.65	4.09	3.76	3.65	3.56	9.05	12.55	17.08	5.33
Merged-chr3-9001934-1	chr3	9001834	9002034	+	623.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2270.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.04	4.28	3.99	5.23	9.41	6.9	11.29	7.15	9.83	7.03	11.56	6.89
Merged-chr11-100841048-3	chr11	100840965	100841165	+	623.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9520.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	7.67	11.82	18.25	4.02	3.27	5.33	2.33	4.77	8.85	5.02	10.05	9.71
Merged-chr11-52003670-3	chr11	52003581	52003781	+	623.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	-540.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	6.86	4.78	2.85	6.44	10.64	9.41	3.65	4.37	9.83	8.54	11.05	8.77
Merged-chr2-93956588-1	chr2	93956488	93956688	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001145034, exon 1 of 1)	exon (NM_001145034, exon 1 of 1)	512.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	5.25	3.52	9.13	4.42	5.73	8.78	4.32	5.21	6.29	3.01	9.04	6.89
Merged-chr2-113824086-2	chr2	113823991	113824191	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	5000.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	11.31	5.79	13.69	5.63	5.73	8.15	6.64	7.12	12.19	9.04	14.07	8.14
Merged-chr10-40347958-2	chr10	40347870	40348070	+	623.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1338.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	4.85	8.55	7.42	5.23	9.0	5.02	8.64	4.29	9.83	15.57	6.03	4.07
Merged-chr11-16954266-2	chr11	16954167	16954367	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176982, exon 4 of 4)	exon (NM_176982, exon 4 of 4)	2857.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	2.42	4.53	4.56	1.61	7.36	6.59	5.65	4.74	20.26	12.05	10.05	5.01
Merged-chr9-50478984-2	chr9	50478886	50479086	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15539.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	5.25	4.53	1.14	1.61	12.27	10.03	2.66	3.08	8.65	7.53	12.06	6.27
Merged-chr5-137075749-2	chr5	137075647	137075847	+	623.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	8.88	4.53	6.85	5.23	7.77	8.78	6.64	7.01	10.62	11.05	10.05	5.64
Merged-chr10-88725505-3	chr10	88725383	88725583	+	623.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5618.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	9.29	6.54	2.85	8.04	6.95	9.72	9.63	5.38	7.47	5.52	13.06	3.13
Merged-chr10-29206897-3	chr10	29206795	29206995	+	623.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4748.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	8.08	8.8	2.85	12.87	6.95	3.76	6.31	10.51	8.46	8.54	7.54	6.27
Merged-chrX-48425503-2	chrX	48425402	48425602	+	623.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	37630.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	3.63	5.53	10.27	6.84	4.91	7.53	6.98	4.71	8.65	8.03	11.05	5.64
Merged-chr19-55767812-3	chr19	55767688	55767888	+	623.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	(TC)n|Simple_repeat|Simple_repeat	25978.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	11.31	7.29	11.41	11.26	6.55	8.47	4.65	4.01	9.44	12.55	7.03	10.96
Merged-chr13-43900923-1	chr13	43900823	43901023	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	115811.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.08	11.32	7.42	3.22	2.45	8.15	3.65	1.74	3.93	8.03	6.03	0.94
Merged-chr4-72366998-1	chr4	72366898	72367098	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	165754.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	2.83	3.52	5.13	1.61	4.09	6.59	2.99	6.67	3.54	8.54	12.06	4.39
Merged-chr1-58801981-1	chr1	58801881	58802081	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	-521.0	NM_001080126	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	1.21	3.27	3.99	0.8	1.64	8.15	1.0	4.12	5.9	1.51	3.52	1.57
Merged-chr12-72334307-1	chr12	72334207	72334407	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	74747.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.81	1.51	1.14	1.61	2.05	0.63	1.33	0.67	7.87	4.02	10.55	4.7
Merged-chr7-126765976-1	chr7	126765876	126766076	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024228)	promoter-TSS (NM_024228)	-438.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	2.42	1.01	0.0	4.02	0.0	2.51	8.64	2.69	2.36	3.51	8.04	4.39
Merged-chr11-85523830-1	chr11	85523730	85523930	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	170666.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	8.08	1.26	1.14	1.61	6.55	2.2	5.31	9.98	5.7	2.51	2.01	2.82
Merged-chr5-30924107-1	chr5	30924007	30924207	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	2548.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	1.62	1.76	7.42	0.4	0.82	3.14	0.0	3.48	6.49	1.51	10.05	5.33
Merged-chr3-79221852-1	chr3	79221752	79221952	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	8933.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.06	2.52	6.85	3.22	4.09	6.59	2.99	5.38	9.05	8.54	8.04	5.33
Merged-chrX-74283194-1	chrX	74283094	74283294	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001172154)	promoter-TSS (NM_001172154)	476.0	NM_001242615	66826.0	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	7.27	6.04	5.7	1.21	4.09	9.09	2.99	4.12	10.23	8.54	3.52	3.45
Merged-chr1-153931415-1	chr1	153931315	153931515	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	31486.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.23	3.52	2.28	7.24	5.73	2.82	2.99	6.45	2.95	1.51	4.02	4.7
Merged-chr5-125067323-1	chr5	125067223	125067423	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 16 of 46)	intron (NM_011424, intron 16 of 46)	63848.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	2.02	4.28	2.28	3.22	2.45	6.27	3.32	5.05	7.47	3.51	2.51	2.82
Merged-chr4-137994345-2	chr4	137994218	137994418	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256195, intron 2 of 34)	CpG-10542	862.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.65	8.3	5.13	7.24	7.36	9.09	6.64	2.97	11.01	6.03	4.52	6.27
Merged-chr18-23842563-1	chr18	23842463	23842663	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	38593.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.63	2.01	2.28	2.41	4.5	3.45	4.32	6.93	3.54	2.01	2.01	2.51
Merged-chr5-41887945-1	chr5	41887845	41888045	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3397.0	NR_105842	102465225.0		NR_105842	ENSMUSG00000098264	Mir6414	Gm27518|mmu-mir-6414	microRNA 6414	ncRNA	3.23	6.04	0.0	3.22	4.09	5.33	1.0	3.73	1.77	9.04	6.53	3.45
Merged-chr8-68996457-1	chr8	68996357	68996557	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92279.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	2.83	4.02	1.71	7.64	0.82	2.51	3.32	2.58	9.83	2.01	10.05	3.13
Merged-chr10-83819858-1	chr10	83819758	83819958	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96993.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	4.44	6.29	6.28	0.8	7.77	4.08	0.66	5.8	6.69	7.53	9.04	6.58
Merged-chr13-81109101-1	chr13	81109001	81109201	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145027.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.42	1.76	0.0	0.8	6.95	2.2	2.66	6.28	2.95	3.01	5.53	2.82
Merged-chr11-96878781-1	chr11	96878681	96878881	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28388.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	0.0	0.0	0.0	1.23	1.25	1.99	3.22	5.51	3.01	7.54	4.39
Merged-chr7-99135509-1	chr7	99135409	99135609	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	5635.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.44	2.01	2.28	2.41	4.09	5.33	3.65	4.35	9.05	3.51	4.52	4.7
Merged-chr3-96639405-1	chr3	96639305	96639505	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011069, intron 3 of 3)	B3|SINE|B2	3558.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	1.62	3.52	1.14	4.02	4.5	8.15	2.66	5.61	13.77	3.01	7.54	3.45
Merged-chr17-48266763-1	chr17	48266663	48266863	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2468.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	3.23	4.28	1.14	4.02	11.05	6.59	3.99	3.2	6.1	6.03	4.52	2.51
Merged-chr14-30362554-1	chr14	30362454	30362654	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	B4|SINE|B4	-9068.0	NM_001083616	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.04	4.28	5.7	2.41	0.41	4.39	8.3	4.49	8.06	4.52	3.01	2.19
Merged-chr4-95073544-1	chr4	95073444	95073644	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21322.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.44	6.79	6.85	10.86	3.27	3.76	3.32	4.68	5.7	5.52	8.54	7.21
Merged-chr13-95489123-1	chr13	95489023	95489223	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-10468.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.66	0.0	9.05	7.53	6.53	4.7
Merged-chr16-11005637-1	chr16	11005537	11005737	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3261.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	8.48	3.27	2.28	4.02	10.23	3.14	8.3	2.47	7.28	5.52	0.5	4.39
Merged-chr19-46394511-1	chr19	46394411	46394611	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1224.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	6.86	5.03	6.85	6.03	6.14	3.45	2.33	5.64	8.65	7.03	14.57	5.64
Merged-chr18-83934452-2	chr18	83934347	83934547	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	152115.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	1.62	3.77	8.56	0.8	2.45	9.72	6.98	6.14	8.46	12.05	4.02	4.07
Merged-chr1-59762825-1	chr1	59762725	59762925	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1454.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	3.63	8.3	11.41	8.04	10.23	8.47	3.65	5.02	6.1	6.53	9.55	8.14
Merged-chr3-105712025-1	chr3	105711925	105712125	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	6567.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.67	3.77	1.14	1.61	9.82	0.94	5.65	6.2	5.11	4.52	9.55	6.89
Merged-chr11-60703315-1	chr11	60703215	60703415	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008502, intron 2 of 20)	intron (NM_008502, intron 2 of 20)	3625.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	6.06	1.76	2.28	2.41	3.27	8.15	2.66	2.47	10.62	6.53	10.05	2.82
Merged-chr11-74848038-1	chr11	74847938	74848138	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17114.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.02	8.3	5.13	3.22	2.86	3.76	4.98	6.48	8.65	5.02	3.52	6.27
Merged-chr4-122996425-1	chr4	122996325	122996525	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008506, exon 1 of 2)	5' UTR (NM_008506, exon 1 of 2)	494.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	6.06	6.04	3.99	4.42	4.5	0.94	4.65	4.77	3.93	9.04	5.53	4.7
Merged-chr9-83592053-1	chr9	83591953	83592153	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	43715.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.02	1.26	1.14	1.61	0.41	2.82	3.99	5.78	1.57	1.0	2.51	0.31
Merged-chr11-103114642-1	chr11	103114542	103114742	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1683.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	2.83	4.53	3.42	0.0	5.32	4.7	2.33	6.25	2.36	1.0	1.0	0.63
Merged-chr2-90625179-1	chr2	90625079	90625279	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44532.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.04	5.53	7.99	2.01	4.09	6.9	0.33	3.5	9.05	7.53	11.56	9.08
Merged-chr16-33185870-1	chr16	33185770	33185970	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_176840, exon 1 of 13)	exon (NM_176840, exon 1 of 13)	799.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	5.65	3.27	1.14	10.05	2.86	5.96	2.33	4.37	6.1	2.01	2.51	5.64
Merged-chr14-26530549-1	chr14	26530449	26530649	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	4075.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	1.21	2.52	3.42	0.8	5.73	4.08	3.99	7.85	7.47	5.52	5.53	9.4
Merged-chr18-9506391-1	chr18	9506291	9506491	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56237.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.62	1.01	5.7	0.0	2.86	5.96	1.33	5.61	3.74	4.02	2.01	6.89
Merged-chr14-50056618-1	chr14	50056518	50056718	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-21118.0	NM_146317	258314.0	Mm.223011	NM_146317	ENSMUSG00000068437	Olfr725	MOR246-3|MOR246-7_p	olfactory receptor 725	protein-coding	0.0	0.0	0.57	0.0	0.41	0.0	1.99	0.0	9.05	5.02	7.54	1.25
Merged-chr9-8004683-1	chr9	8004583	8004783	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001171147)	promoter-TSS (NM_001171147)	-87.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	12.92	9.81	0.0	5.23	1.64	8.15	5.98	4.74	11.8	6.53	8.04	3.45
Merged-chr13-23696332-1	chr13	23696232	23696432	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010377, exon 1 of 1)	exon (NM_010377, exon 1 of 1)	521.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	7.27	3.52	4.56	2.41	4.09	2.82	3.65	1.46	7.28	9.04	18.09	7.52
Merged-chr11-120340249-1	chr11	120340149	120340349	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	7164.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	13.33	5.28	10.27	2.41	0.41	6.9	1.0	0.95	2.95	4.52	1.51	2.82
Merged-chr3-89953644-1	chr3	89953544	89953744	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081182, intron 11 of 27)	intron (NM_001081182, intron 11 of 27)	9688.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	4.04	7.29	1.71	0.0	5.32	10.98	3.65	5.13	5.51	6.03	5.02	5.33
Merged-chr2-102981033-1	chr2	102980933	102981133	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79368.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.81	1.76	4.56	2.41	4.09	4.39	0.66	5.5	3.93	6.53	2.51	4.39
Merged-chr9-50728099-1	chr9	50727999	50728199	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178118)	promoter-TSS (NM_178118)	-115.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	1.21	3.77	1.71	6.03	4.09	7.84	4.98	3.87	9.05	3.51	1.51	6.89
Merged-chr12-108630258-1	chr12	108630158	108630358	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5495.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.65	0.25	2.28	4.02	3.68	6.59	3.65	7.07	1.57	3.01	4.02	4.39
Merged-chr15-58803110-1	chr15	58803010	58803210	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	20317.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	2.83	5.03	1.14	5.23	4.09	3.14	3.65	8.07	8.26	6.03	12.56	11.28
Merged-chr14-33276526-1	chr14	33276426	33276626	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 3 of 10)	B4A|SINE|B4	59703.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.06	4.53	1.14	5.23	3.27	6.27	4.98	12.67	3.15	10.04	7.03	5.95
Merged-chr9-107675898-1	chr9	107675798	107675998	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008140, exon 8 of 9)	exon (NM_008140, exon 8 of 9)	3694.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	2.02	5.03	3.42	6.03	7.77	6.59	3.99	5.36	4.52	2.51	5.02	5.01
Merged-chr9-75312177-2	chr9	75312074	75312274	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010313, intron 2 of 12)	intron (NM_010313, intron 2 of 12)	-1894.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	6.46	6.79	7.99	3.22	4.09	6.27	2.66	7.26	5.9	5.02	9.55	3.45
Merged-chr11-118201709-1	chr11	118201609	118201809	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11033.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.85	3.02	4.56	2.41	6.55	1.25	2.66	4.23	2.56	5.52	2.01	2.19
Merged-chr13-92678760-2	chr13	92678672	92678872	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	67634.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.44	8.05	7.42	7.24	8.18	8.78	5.31	6.53	8.65	8.03	9.04	3.45
Merged-chr14-21312057-1	chr14	21311957	21312157	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-187713.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.81	3.77	1.71	1.21	1.23	3.45	2.66	6.42	2.56	1.51	3.52	0.94
Merged-chr14-63121618-1	chr14	63121518	63121718	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-844.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	2.02	1.26	1.14	1.61	7.77	1.88	1.0	4.79	1.77	0.5	5.53	2.51
Merged-chr13-107057860-1	chr13	107057760	107057960	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	35290.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.65	9.06	5.7	2.41	0.0	1.88	4.65	4.93	7.28	6.03	6.03	4.7
Merged-chr2-28242303-1	chr2	28242203	28242403	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36614.0	NM_019498	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	2.02	6.54	2.28	4.02	7.77	6.27	8.64	4.43	6.69	5.52	10.55	2.51
Merged-chr9-21261976-1	chr9	21261876	21262076	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-3309.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	3.23	5.03	0.57	1.61	4.91	5.64	9.97	7.79	11.21	6.03	3.52	6.89
Merged-chrX-48428337-1	chrX	48428237	48428437	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	34795.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	2.02	2.77	0.57	1.61	6.14	1.88	3.99	4.35	4.52	4.02	5.53	4.7
Merged-chr18-75917929-1	chr18	75917829	75918029	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	97751.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.0	1.01	1.14	0.0	0.0	0.94	1.33	1.82	10.03	10.04	26.63	6.58
Merged-chr1-191439868-1	chr1	191439768	191439968	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 5 of 5)	MTD|LTR|ERVL-MaLR	25180.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	2.42	3.52	5.7	0.4	0.0	3.14	0.0	1.4	17.51	5.52	9.55	8.77
Merged-chr1-189675544-1	chr1	189675444	189675644	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081363, intron 7 of 17)	intron (NM_001081363, intron 7 of 17)	12542.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.85	1.51	11.41	5.63	3.68	3.45	5.31	4.54	2.36	2.51	2.51	0.63
Merged-chr15-54921129-2	chr15	54921000	54921200	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-954.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	3.23	2.26	2.28	5.63	6.55	3.45	3.65	4.15	6.29	7.03	7.54	2.82
Merged-chr13-83069059-1	chr13	83068959	83069159	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-370726.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	1.62	1.01	1.14	4.83	6.95	0.63	2.33	1.12	1.18	2.01	0.5	0.0
Merged-chr1-88134690-1	chr1	88134590	88134790	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145079)	promoter-TSS (NM_145079)	-119.0	NM_145079	94284.0	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	4.04	4.02	3.99	0.8	2.45	5.64	7.97	5.94	2.75	2.01	1.0	0.31
Merged-chr15-85331793-2	chr15	85331711	85331911	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4570.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	2.42	2.26	2.28	4.83	4.5	6.27	6.98	4.09	12.0	7.53	10.05	3.13
Merged-chr11-95533926-1	chr11	95533826	95534026	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19361.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	8.48	7.8	0.0	2.41	3.27	0.94	3.32	2.38	10.03	4.02	7.54	1.88
Merged-chr6-134659467-3	chr6	134659347	134659547	+	622.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 2 of 3)	RSINE1|SINE|B4	18507.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.65	7.29	4.56	6.84	6.55	4.39	5.98	6.45	6.49	7.53	5.02	3.13
Merged-chr18-57577173-2	chr18	57577064	57577264	+	622.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-24767.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	2.42	10.56	9.13	10.05	4.91	0.63	2.99	4.85	5.51	1.0	5.02	1.88
Merged-chr12-34779505-2	chr12	34779402	34779602	+	622.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	137593.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.9	7.04	14.26	8.04	3.68	5.33	3.99	8.05	8.06	7.03	7.03	7.21
Merged-chr2-120381605-3	chr2	120381496	120381696	+	622.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110497, intron 7 of 19)	intron (NM_001110497, intron 7 of 19)	-22300.0	NM_172672	76051.0	Mm.38851	NM_172672	ENSMUSG00000062646	Ganc	5830445O15Rik|9330160A12|mFLJ00088	glucosidase, alpha; neutral C	protein-coding	6.46	4.78	15.4	5.23	5.73	5.96	5.65	15.9	12.19	7.53	12.56	8.14
Merged-chr4-123687690-2	chr4	123687552	123687752	+	622.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3292.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	8.48	5.53	3.99	6.44	7.36	8.47	5.98	3.73	8.65	7.53	5.53	6.89
Merged-chr11-50431582-2	chr11	50431458	50431658	+	622.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172557)	promoter-TSS (NM_172557)	-447.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	5.65	5.53	5.7	2.82	4.5	6.59	8.97	3.73	4.72	3.51	8.04	8.14
Merged-chr13-45438224-1	chr13	45438124	45438324	+	622.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	48482.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.23	7.29	2.85	4.83	4.91	8.78	6.31	4.85	2.56	4.52	3.01	4.7
Merged-chr12-5410564-1	chr12	5410464	5410664	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015579, intron 1 of 1)	intron (NR_015579, intron 1 of 1)	34062.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	6.46	4.53	0.57	0.8	6.14	6.59	2.66	6.28	4.33	2.01	14.57	5.95
Merged-chr2-158134081-1	chr2	158133981	158134181	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009373, intron 4 of 12)	MIR3|SINE|MIR	12311.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.46	3.77	1.71	6.03	9.0	6.9	4.98	5.41	7.47	3.51	2.01	2.19
Merged-chr3-142630603-1	chr3	142630503	142630703	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010260, exon 6 of 11)	exon (NM_010260, exon 6 of 11)	-6657.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	3.63	2.52	3.99	4.02	6.14	6.9	7.97	5.1	6.49	3.51	12.06	5.33
Merged-chr11-23810888-1	chr11	23810788	23810988	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39918.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	7.27	4.53	4.56	9.25	8.18	7.53	7.31	4.96	4.13	6.53	13.57	5.01
Merged-chr4-103107727-1	chr4	103107627	103107827	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	6572.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	1.62	2.26	6.85	4.83	6.95	7.53	5.65	4.85	4.33	5.52	7.54	2.82
Merged-chr11-73006589-1	chr11	73006489	73006689	+	622.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	7444.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	10.09	5.79	2.85	9.65	6.95	12.23	2.66	6.17	5.11	11.05	2.01	6.58
Merged-chr1-62691360-2	chr1	62691248	62691448	+	622.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11969.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	8.48	7.8	5.7	12.07	5.32	5.64	2.99	6.84	5.11	1.51	5.02	0.63
Merged-chr16-90281142-2	chr16	90281053	90281253	+	622.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3333.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.25	7.29	3.42	4.02	8.18	5.33	5.31	6.2	8.26	5.52	13.06	6.89
Merged-chr1-73902453-3	chr1	73902329	73902529	+	622.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37963.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	10.9	6.79	6.85	8.04	8.18	4.39	4.65	10.23	5.7	8.03	8.54	7.21
Merged-chr16-50737300-2	chr16	50737199	50737399	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4526.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	10.09	4.78	17.68	2.01	8.59	15.05	5.65	12.67	10.82	13.56	13.06	7.21
Merged-chr8-39650691-1	chr8	39650591	39650791	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-8013.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.63	1.76	0.0	7.24	2.45	7.21	7.97	4.32	1.38	1.0	3.01	1.88
Merged-chr9-75582122-1	chr9	75582022	75582222	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038710, intron 6 of 9)	intron (NM_001038710, intron 6 of 9)	17011.0	NM_001038710	50876.0	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	4.04	3.52	2.28	4.02	5.73	7.53	1.0	6.11	3.74	2.51	6.03	5.33
Merged-chr14-70629634-1	chr14	70629534	70629734	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252665)	promoter-TSS (NM_001252665)	520.0	NM_013514	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	3.63	4.53	3.42	1.61	6.55	4.7	1.0	4.85	5.11	2.01	7.03	10.02
Merged-chr2-101159503-1	chr2	101159403	101159603	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-465245.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	4.85	0.25	0.0	2.82	3.27	5.96	8.64	5.86	4.13	5.52	5.02	0.94
Merged-chr2-159735437-1	chr2	159735337	159735537	+	622.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	-211904.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.81	0.5	2.28	0.0	2.05	0.0	1.66	3.76	7.47	8.03	13.06	16.6
Merged-chr5-65089798-2	chr5	65089696	65089896	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17772.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.85	8.3	3.42	5.63	2.45	6.27	2.66	5.8	8.85	7.53	10.05	3.45
Merged-chr5-122627459-2	chr5	122627352	122627552	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12908.0	NM_009879	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	4.04	4.28	4.56	0.0	5.32	5.02	4.65	8.86	9.64	15.06	12.06	6.27
Merged-chr16-32638708-2	chr16	32638585	32638785	+	622.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5958.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	6.06	7.29	5.13	6.44	9.0	5.02	4.98	5.83	3.74	7.03	4.52	7.21
Merged-chr9-75435151-1	chr9	75435051	75435251	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-6373.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	2.83	7.29	9.7	3.22	6.95	5.96	5.65	4.4	3.93	13.05	4.02	5.95
Merged-chr16-77019709-1	chr16	77019609	77019809	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	5640.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.25	4.78	2.85	0.8	4.91	2.82	3.32	5.24	4.52	4.52	1.51	4.07
Merged-chrX-20819886-1	chrX	20819786	20819986	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28657.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	6.46	4.78	2.28	1.61	6.55	5.64	1.66	5.83	3.74	4.52	3.01	5.95
Merged-chr13-9099866-1	chr13	9099766	9099966	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5985.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.06	2.26	7.99	4.83	4.5	4.39	5.98	5.33	15.14	1.0	6.53	5.33
Merged-chr12-86947914-1	chr12	86947814	86948014	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173735, intron 1 of 3)	CpG	571.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	9.29	4.02	2.28	4.42	8.59	4.7	2.99	5.8	4.13	1.51	3.52	5.33
Merged-chr7-81243256-3	chr7	81243166	81243366	+	622.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	29462.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	8.08	5.28	9.7	4.83	9.82	11.6	2.66	4.04	10.62	6.03	8.54	6.58
Merged-chr2-181487788-3	chr2	181487691	181487891	+	622.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5415.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	8.88	4.78	5.13	5.23	8.59	9.09	7.31	5.55	7.67	4.02	13.57	9.4
Merged-chr14-78733582-2	chr14	78733445	78733645	+	622.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-816.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.23	8.05	6.85	14.08	5.32	2.51	4.32	5.36	6.1	6.03	7.03	2.82
Merged-chr2-128203295-3	chr2	128203188	128203388	+	622.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75713.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	8.48	1.76	4.56	10.86	6.95	16.93	5.98	6.93	6.88	4.52	2.51	6.27
Merged-chr9-37253359-1	chr9	37253259	37253459	+	622.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	(A)n|Simple_repeat|Simple_repeat	2379.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.23	4.02	2.28	4.83	9.41	2.51	2.66	4.93	2.36	4.02	0.5	6.27
Merged-chr13-23464395-1	chr13	23464295	23464495	+	622.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013483, exon 3 of 8)	exon (NM_013483, exon 3 of 8)	1506.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	5.65	5.28	1.14	9.25	3.68	7.21	3.99	4.37	2.56	2.51	3.52	5.01
Merged-chr8-104249864-3	chr8	104249759	104249959	+	622.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1002.0	NM_001037841	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	7.67	1.26	8.56	7.64	2.45	1.25	3.99	14.44	7.87	1.0	7.03	5.33
Merged-chr17-87064194-1	chr17	87064094	87064294	+	622.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38633.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.23	4.53	4.56	5.63	9.0	7.53	8.64	6.22	11.8	10.04	8.04	7.21
Merged-chr12-103368026-2	chr12	103367933	103368133	+	622.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8861.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	4.44	7.04	7.99	8.85	6.55	7.84	5.65	4.88	6.88	12.05	9.04	6.27
Merged-chr1-65112199-2	chr1	65112117	65112317	+	622.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-8854.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	2.42	1.51	2.28	4.83	7.36	5.33	1.33	5.21	11.21	8.54	15.58	5.01
Merged-chr15-89231188-2	chr15	89231092	89231292	+	622.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026813, intron 1 of 24)	MLTR11B|LTR|ERVK	19633.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	7.27	11.57	8.56	0.8	5.32	6.59	4.32	4.65	8.26	3.01	7.54	5.95
Merged-chr8-4109068-3	chr8	4108949	4109149	+	622.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3285.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	8.08	2.01	10.27	12.87	8.18	6.27	9.3	19.01	9.05	6.53	8.04	5.64
Merged-chr8-105544048-3	chr8	105543968	105544168	+	622.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	21996.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	14.54	8.05	9.13	6.84	7.36	9.09	2.99	5.19	7.67	2.51	4.52	6.27
Merged-chr13-58484874-2	chr13	58484774	58484974	+	622.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81531.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	2.02	2.26	1.14	4.42	8.18	7.84	5.31	7.46	5.51	10.04	10.55	12.53
Merged-chr8-104146428-2	chr8	104146353	104146553	+	622.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24060.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	3.23	7.8	3.99	8.04	8.18	4.08	3.99	6.48	9.64	13.05	11.56	5.33
Merged-chr2-66180422-1	chr2	66180322	66180522	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55629.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.4	2.77	0.57	0.4	4.5	5.33	1.99	5.02	2.95	4.02	2.51	2.51
Merged-chr3-130888073-1	chr3	130887973	130888173	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-157675.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	7.27	2.52	8.56	2.82	4.09	9.72	1.99	2.64	9.05	7.03	14.57	8.14
Merged-chr2-59969335-1	chr2	59969235	59969435	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001001182, exon 7 of 36)	exon (NM_001001182, exon 7 of 36)	-86729.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	3.63	4.28	0.0	2.41	5.32	1.88	0.66	5.52	8.06	5.02	5.53	3.76
Merged-chrX-77790877-1	chrX	77790777	77790977	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016979, intron 1 of 8)	intron (NM_016979, intron 1 of 8)	5083.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	1.62	3.02	0.0	3.22	9.41	3.76	0.66	4.51	2.95	0.0	3.01	2.19
Merged-chr3-79018824-1	chr3	79018724	79018924	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	126063.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.02	2.01	0.0	2.82	8.59	7.84	1.33	3.5	6.29	1.0	2.01	3.45
Merged-chr7-4238566-1	chr7	4238466	4238666	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001081239, exon 4 of 6)	exon (NM_001081239, exon 4 of 6)	812.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	8.08	6.79	2.85	0.0	1.23	1.57	3.32	3.56	4.92	6.53	6.53	4.39
Merged-chr2-155584319-1	chr2	155584219	155584419	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291111, intron 1 of 11)	RSINE1|SINE|B4	8491.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	2.83	0.5	7.99	2.01	3.68	2.82	1.33	2.61	7.28	6.53	10.55	4.07
Merged-chr6-54963074-1	chr6	54962974	54963174	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	8587.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.23	5.28	3.42	4.02	2.86	4.7	3.65	0.9	7.87	8.54	11.05	4.7
Merged-chr19-41054906-1	chr19	41054806	41055006	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001043228, intron 9 of 10)	intron (NM_001043228, intron 9 of 10)	22207.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	3.23	5.03	11.98	8.04	1.64	6.27	1.0	4.79	1.97	3.51	6.53	3.76
Merged-chr1-43916189-1	chr1	43916089	43916289	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-17805.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	2.02	1.26	4.56	1.61	2.86	4.39	7.31	4.91	3.54	8.54	8.04	3.13
Merged-chr17-26439093-1	chr17	26438993	26439193	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081656, exon 3 of 5)	exon (NM_001081656, exon 3 of 5)	24128.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	3.23	4.02	0.0	3.62	3.27	5.02	4.32	5.64	6.49	8.03	7.03	6.89
Merged-chr1-85900682-1	chr1	85900582	85900782	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	6172.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	5.25	5.79	6.28	5.63	4.09	2.2	5.98	2.92	5.31	9.54	9.55	5.64
Merged-chr1-134305227-1	chr1	134305127	134305327	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001144855, intron 23 of 28)	L2a|LINE|L2	15223.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	1.21	0.25	0.0	0.8	11.86	7.84	6.98	6.84	4.13	4.52	3.52	4.07
Merged-chr7-67494534-1	chr7	67494434	67494634	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121676.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.81	3.52	0.0	4.83	1.64	3.76	4.98	4.57	4.72	2.01	3.52	3.76
Merged-chr4-125160493-1	chr4	125160393	125160593	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32612.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.27	7.55	3.42	4.02	5.73	16.31	2.66	4.88	5.51	11.55	15.07	4.7
Merged-chr19-17393489-1	chr19	17393389	17393589	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-554.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	2.02	6.79	1.71	2.01	3.68	4.08	4.65	4.57	3.34	2.01	0.0	1.88
Merged-chr1-171210991-1	chr1	171210891	171211091	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2979.0	NM_009803	12355.0	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	4.85	0.5	3.42	7.24	7.36	3.14	1.0	5.52	1.77	1.51	7.03	1.88
Merged-chr5-140751218-2	chr5	140751107	140751307	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	27080.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	9.69	8.05	4.56	7.24	6.95	9.72	5.65	4.29	3.93	4.52	4.02	5.64
Merged-chr18-83361397-1	chr18	83361297	83361497	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35513.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	1.62	3.02	2.28	1.61	3.27	4.39	1.33	4.77	1.57	5.02	9.55	1.88
Merged-chr9-58979219-1	chr9	58979119	58979319	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008684, intron 4 of 28)	intron (NM_008684, intron 4 of 28)	57222.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.81	5.53	1.14	0.4	5.32	3.76	1.33	3.95	5.31	7.03	8.04	2.51
Merged-chr3-84774455-1	chr3	84774355	84774555	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41122.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.4	1.01	8.56	4.42	4.09	4.08	5.65	6.64	4.13	3.01	0.5	2.82
Merged-chr3-89391225-1	chr3	89391125	89391325	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040403)	promoter-TSS (NR_040403)	-639.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	12.11	4.02	1.71	3.22	1.64	1.88	2.33	1.88	5.31	11.05	4.02	3.13
Merged-chr5-99619208-1	chr5	99619108	99619308	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	109852.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	1.62	2.01	0.0	1.61	2.45	6.27	0.33	5.89	5.7	2.01	4.02	0.94
Merged-chr6-124415506-1	chr6	124415406	124415606	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	349.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	8.08	5.53	7.99	3.22	5.73	3.76	5.31	2.92	10.62	14.06	6.53	6.58
Merged-chr2-167605396-2	chr2	167605297	167605497	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26608.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	8.88	6.79	3.99	6.03	6.95	5.33	1.99	6.81	11.6	7.03	8.54	8.14
Merged-chr16-65377314-1	chr16	65377214	65377414	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143315.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.23	4.02	5.13	7.24	6.55	3.45	5.31	4.32	9.24	13.05	5.02	4.7
Merged-chr10-93279293-1	chr10	93279193	93279393	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	31866.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.25	2.77	7.99	2.41	2.05	6.9	2.66	5.61	3.15	2.01	9.55	3.13
Merged-chr10-127126808-2	chr10	127126714	127126914	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-5654.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.04	9.31	4.56	2.41	8.18	8.47	1.99	6.98	8.65	10.54	10.05	8.77
Merged-chr1-45947951-1	chr1	45947851	45948051	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22357.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	2.42	2.01	5.13	1.61	2.45	3.14	2.33	7.96	4.33	5.02	12.06	8.46
Merged-chr6-5639808-1	chr6	5639708	5639908	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85831.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	4.04	3.52	6.28	5.63	7.77	6.59	2.33	4.88	3.93	3.01	13.06	5.64
Merged-chr18-36503656-1	chr18	36503556	36503756	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	12149.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.46	9.81	0.0	0.8	4.91	6.27	0.0	0.0	2.95	0.5	0.0	1.25
Merged-chr14-26476116-1	chr14	26476016	26476216	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310445, intron 2 of 22)	intron (NM_001310445, intron 2 of 22)	58508.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	2.42	5.53	2.28	6.44	8.18	8.78	2.66	6.22	1.18	6.03	4.02	4.39
Merged-chr11-70080122-1	chr11	70080022	70080222	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12522.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	5.25	2.26	9.13	10.86	6.55	2.2	5.65	10.99	1.57	2.01	5.02	3.13
Merged-chr2-8674219-1	chr2	8674119	8674319	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-515296.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.81	1.01	4.56	4.02	4.91	7.84	0.0	5.3	3.93	5.52	1.51	5.01
Merged-chr4-149696421-1	chr4	149696321	149696521	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	2287.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	1.62	3.02	1.14	0.0	6.14	5.02	3.32	2.16	13.77	8.03	2.01	1.57
Merged-chr5-142764504-1	chr5	142764404	142764604	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122730, intron 12 of 27)	intron (NM_001122730, intron 12 of 27)	52883.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	9.29	3.27	0.0	5.63	7.36	7.53	5.65	6.06	6.49	5.52	6.53	5.01
Merged-chr6-89258872-1	chr6	89258772	89258972	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26853.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.81	3.77	2.28	2.41	2.86	2.82	2.99	4.43	4.72	1.51	4.02	2.51
Merged-chr1-39859438-1	chr1	39859338	39859538	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-12108.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	5.65	2.52	7.99	2.41	11.05	9.72	2.66	3.34	4.52	5.52	5.02	2.51
Merged-chr12-57297114-1	chr12	57297014	57297214	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	66689.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.4	3.02	11.41	0.8	4.5	2.82	7.97	6.39	3.15	6.03	4.02	6.89
Merged-chr10-86863594-1	chr10	86863494	86863694	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138673, intron 54 of 68)	intron (NM_138673, intron 54 of 68)	84589.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.42	2.77	5.13	2.01	4.91	7.21	4.65	5.52	8.26	2.01	8.04	3.13
Merged-chr2-138257578-1	chr2	138257478	138257678	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	994.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	2.42	4.02	1.14	3.62	4.91	5.64	9.63	5.78	3.54	2.01	3.52	5.33
Merged-chr3-27646047-2	chr3	27645953	27646153	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-61058.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	5.25	5.53	4.56	5.63	7.36	4.39	6.64	5.19	7.87	8.54	12.06	5.01
Merged-chr14-61817888-1	chr14	61817788	61817988	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-135515.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	1.62	4.02	5.13	6.84	6.95	4.39	2.99	6.11	3.93	6.03	7.54	8.14
Merged-chr6-134775011-1	chr6	134774911	134775111	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-17349.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	5.25	2.01	1.71	4.02	2.86	3.45	7.31	6.48	1.97	0.5	1.51	1.25
Merged-chr3-15285566-1	chr3	15285466	15285666	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46736.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.04	1.01	0.57	6.44	4.91	4.7	3.32	5.52	0.2	1.51	1.0	1.25
Merged-chr5-138705368-1	chr5	138705268	138705468	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49713.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	0.0	0.0	1.61	4.91	8.78	7.31	6.11	0.39	0.0	0.0	0.31
Merged-chr11-119339867-1	chr11	119339767	119339967	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130886, intron 18 of 21)	B3|SINE|B2	15643.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	4.85	4.28	2.85	1.61	9.82	1.57	1.0	4.96	5.7	5.52	4.52	3.13
Merged-chr6-88027569-1	chr6	88027469	88027669	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-7774.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.4	3.52	1.14	2.82	4.91	8.15	3.65	5.19	1.97	4.52	2.01	5.33
Merged-chr13-52646553-1	chr13	52646453	52646653	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	49671.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.83	4.28	1.14	3.62	2.86	3.14	1.99	3.7	8.85	8.03	6.03	0.94
Merged-chr18-68197521-1	chr18	68197421	68197621	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-30425.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	1.62	1.01	1.71	0.8	4.5	1.88	1.66	4.35	1.77	3.01	3.52	2.82
Merged-chr6-147099562-1	chr6	147099462	147099662	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081237, intron 1 of 2)	intron (NM_001081237, intron 1 of 2)	8487.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.81	1.01	6.85	2.82	7.36	1.88	3.65	5.69	4.72	0.0	3.52	6.89
Merged-chr15-59662758-1	chr15	59662658	59662858	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14104.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.02	0.5	3.42	1.61	0.82	5.96	3.32	4.99	1.38	3.51	5.53	1.57
Merged-chr2-83754519-1	chr2	83754419	83754619	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 3 of 29)	MTD|LTR|ERVL-MaLR	30122.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.85	5.28	1.14	4.02	2.05	5.64	3.32	5.1	3.93	2.01	5.53	3.45
Merged-chr3-58689385-1	chr3	58689285	58689485	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009174, intron 1 of 1)	Lx|LINE|L1	3003.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	4.85	7.04	3.42	7.24	2.45	7.84	4.32	4.26	2.95	6.03	6.53	4.07
Merged-chr12-75572476-1	chr12	75572376	75572576	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	23724.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	1.21	2.52	1.71	4.83	4.5	7.84	3.32	5.86	1.38	5.02	2.01	0.63
Merged-chr8-57622969-2	chr8	57622879	57623079	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	-28774.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	3.23	0.75	4.56	6.84	6.55	5.96	6.64	5.66	10.23	4.02	5.02	5.95
Merged-chr13-41326361-1	chr13	41326261	41326461	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	32640.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.63	5.03	2.28	1.61	4.91	2.2	4.32	5.1	5.51	3.51	4.02	4.07
Merged-chr11-95853876-1	chr11	95853776	95853976	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4941.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.88	4.02	9.7	3.22	3.27	6.27	3.65	1.57	2.16	2.51	4.52	5.64
Merged-chr18-57806032-1	chr18	57805932	57806132	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13699.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	2.42	3.52	1.14	0.8	2.05	6.9	2.33	8.38	0.39	0.5	0.5	0.94
Merged-chr10-60697198-3	chr10	60697097	60697297	+	621.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045556)	promoter-TSS (NR_045556)	-707.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	6.06	5.28	0.57	5.23	7.36	9.41	2.33	6.34	9.64	9.04	11.56	6.27
Merged-chr11-55498163-3	chr11	55498074	55498274	+	621.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013716, intron 10 of 11)	intron (NM_013716, intron 10 of 11)	-3052.0	NR_106112	102465760.0		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	7.67	13.08	11.98	3.22	11.45	12.54	6.31	5.38	6.69	14.56	9.04	7.21
Merged-chr11-97546501-2	chr11	97546377	97546577	+	621.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	CpG	28649.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.63	4.78	10.84	2.82	8.18	7.53	3.32	6.36	7.08	10.54	5.53	6.27
Merged-chr11-114667790-2	chr11	114667680	114667880	+	621.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-763.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.81	5.28	0.0	1.21	3.68	1.88	1.99	2.72	5.7	9.04	7.03	7.83
Merged-chr6-89000480-2	chr6	89000388	89000588	+	621.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95622.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	2.83	9.06	5.13	8.45	6.95	6.27	4.65	6.17	3.54	2.51	1.51	0.0
Merged-chr7-28391782-1	chr7	28391682	28391882	+	621.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026042, intron 1 of 3)	intron (NM_026042, intron 1 of 3)	908.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	5.65	1.01	9.7	3.22	5.32	7.84	4.65	1.51	12.0	7.53	14.57	8.77
Merged-chr6-113245763-3	chr6	113245664	113245864	+	621.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155434, intron 2 of 17)	intron (NR_155434, intron 2 of 17)	7921.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	9.69	5.03	9.13	6.44	1.64	6.27	2.33	8.1	16.52	6.53	12.06	4.07
Merged-chr2-32665541-1	chr2	32665441	32665641	+	621.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146348, intron 2 of 14)	intron (NM_001146348, intron 2 of 14)	13212.0	NR_035479	100316776.0		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	4.44	8.05	2.28	3.22	8.59	6.9	3.99	5.61	2.75	1.51	2.51	1.25
Merged-chr2-73427530-1	chr2	73427430	73427630	+	621.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26359.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.04	2.77	2.28	5.23	7.77	9.09	6.98	5.24	4.13	5.02	11.05	5.33
Merged-chr2-144331275-2	chr2	144331165	144331365	+	621.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152947)	promoter-TSS (NM_152947)	97.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	1.62	4.78	8.56	4.83	7.36	3.14	7.31	5.78	3.15	4.02	4.02	8.46
Merged-chr7-43282917-2	chr7	43282828	43283028	+	621.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30372.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.04	4.53	1.71	1.61	9.41	5.64	5.65	5.38	5.9	10.04	13.57	7.21
Merged-chr6-97150465-3	chr6	97150371	97150571	+	621.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1588.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	3.63	7.04	4.56	3.22	4.09	6.59	3.32	6.53	8.26	10.54	7.54	5.95
Merged-chr18-68499179-2	chr18	68499078	68499278	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69858.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	6.06	4.28	5.13	0.8	4.5	5.96	10.63	1.21	3.54	8.03	11.56	1.57
Merged-chr4-102785335-1	chr4	102785235	102785435	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	25200.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.0	0.5	1.14	1.61	3.27	0.63	2.99	5.78	1.97	1.0	1.0	0.63
Merged-chrX-53369711-1	chrX	53369611	53369811	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358456, intron 1 of 6)	intron (NM_001358456, intron 1 of 6)	848.0	NM_001358456	70380.0	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	5.65	4.53	6.85	2.41	10.64	2.82	5.98	3.67	7.87	6.03	8.04	7.21
Merged-chr19-32832285-2	chr19	32832164	32832364	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74687.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.04	3.02	8.56	1.61	8.59	5.64	4.98	2.86	7.47	4.02	8.54	6.58
Merged-chr11-68509313-1	chr11	68509213	68509413	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	PB1D10|SINE|Alu	6294.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.06	5.28	7.99	0.8	5.73	2.2	5.31	4.68	4.72	3.01	2.51	2.19
Merged-chr3-79299604-1	chr3	79299504	79299704	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-45772.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.81	2.01	3.42	2.41	6.55	4.7	4.98	11.19	0.0	0.0	0.0	0.0
Merged-chr2-164860312-1	chr2	164860212	164860412	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-2604.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	7.27	4.02	10.27	4.02	5.73	9.72	5.98	3.95	14.36	5.52	7.54	6.89
Merged-chr13-62952838-1	chr13	62952738	62952938	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12055.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.63	3.02	5.7	7.24	5.32	1.57	7.31	9.45	3.54	0.5	6.53	3.76
Merged-chr2-27774186-1	chr2	27774086	27774286	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	63603.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.86	11.32	4.56	3.62	3.68	5.64	0.0	1.85	1.18	3.51	2.01	2.19
Merged-chr7-89168758-2	chr7	89168659	89168859	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	170028.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.23	8.05	11.98	6.03	2.86	5.02	3.65	6.17	5.51	8.03	9.55	5.64
Merged-chr19-32947305-2	chr19	32947213	32947413	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	189736.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.85	10.06	9.7	9.25	13.5	5.64	7.97	6.14	9.24	6.03	2.51	3.13
Merged-chr8-75096998-2	chr8	75096898	75097098	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010442, exon 3 of 5)	exon (NM_010442, exon 3 of 5)	3380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.27	6.29	1.14	3.22	7.77	6.59	12.95	3.22	6.29	11.55	8.04	8.46
Merged-chr17-33950808-2	chr17	33950716	33950916	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019420, exon 1 of 1)	exon (NM_019420, exon 1 of 1)	672.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	3.63	7.04	3.42	2.41	7.77	5.96	2.66	3.62	6.1	8.54	5.02	10.02
Merged-chr6-87452184-1	chr6	87452084	87452284	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	23190.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.81	0.75	0.0	1.61	5.73	9.09	4.32	4.96	1.77	1.0	4.52	5.33
Merged-chr2-152791153-1	chr2	152791053	152791253	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	36980.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	2.83	9.31	18.83	7.64	0.0	0.63	0.0	1.04	4.33	1.0	1.51	1.57
Merged-chr2-58700088-1	chr2	58699988	58700188	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-55096.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.83	8.05	5.7	8.45	1.23	7.53	4.65	4.43	6.88	4.02	7.03	7.52
Merged-chr17-34630970-2	chr17	34630887	34631087	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030890, exon 2 of 4)	exon (NM_030890, exon 2 of 4)	1301.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	6.86	4.02	5.13	6.03	3.27	2.82	9.63	3.84	8.46	7.03	8.54	14.1
Merged-chr14-67875938-2	chr14	67875838	67876038	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-16193.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	7.67	9.06	7.99	8.45	5.73	9.72	13.29	6.45	4.72	7.03	10.05	4.7
Merged-chr7-30492938-2	chr7	30492853	30493053	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019546)	promoter-TSS (NM_019546)	-705.0	NM_019546	56189.0	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	6.86	1.51	2.85	1.61	3.68	5.96	1.33	6.22	7.28	11.55	7.03	10.34
Merged-chr2-51991664-1	chr2	51991564	51991764	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-18456.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	3.23	0.5	1.14	0.8	4.5	6.59	1.33	3.48	3.34	5.02	5.02	0.31
Merged-chr17-29022497-2	chr17	29022385	29022585	+	621.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10175.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	11.31	9.56	6.85	10.05	5.73	12.23	10.3	5.92	6.69	10.04	3.01	4.39
Merged-chr11-3387258-3	chr11	3387154	3387354	+	621.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-15850.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	10.9	2.52	5.13	8.85	7.36	6.27	2.66	4.79	10.23	9.04	15.07	6.89
Merged-chr7-64286835-2	chr7	64286740	64286940	+	621.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-830.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	10.5	9.06	6.85	9.65	3.27	4.39	0.0	4.26	9.24	6.53	4.52	11.59
Merged-chr4-33396676-2	chr4	33396578	33396778	+	621.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 12 of 15)	intron (NM_001305273, intron 12 of 15)	-41403.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	6.06	2.52	4.56	6.84	9.0	10.66	2.66	7.15	9.24	4.02	13.06	5.64
Merged-chr6-115901844-1	chr6	115901744	115901944	+	621.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30083.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	4.85	3.52	3.99	2.41	8.59	11.6	1.66	5.05	5.11	12.55	3.52	5.01
Merged-chr6-42351567-1	chr6	42351467	42351667	+	621.333313	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_011777, exon 5 of 10)	exon (NM_011777, exon 5 of 10)	1739.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.86	6.29	9.13	5.63	6.14	8.15	6.31	4.93	5.7	5.52	8.54	8.77
Merged-chr12-52024677-1	chr12	52024577	52024777	+	621.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008159, intron 1 of 1)	intron (NM_008159, intron 1 of 1)	3386.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	4.85	3.02	2.85	4.02	7.36	6.27	4.65	7.21	12.59	3.01	1.51	4.07
Merged-chr3-119761926-3	chr3	119761824	119762024	+	621.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	URR1A|DNA|hAT-Charlie	21464.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	7.67	4.02	8.56	8.04	3.68	6.27	8.97	7.21	9.44	4.02	2.51	7.52
Merged-chr2-153032446-1	chr2	153032346	153032546	+	621.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001011732, exon 1 of 3)	exon (NM_001011732, exon 1 of 3)	594.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	4.44	1.76	3.42	2.41	4.91	5.02	1.99	9.42	9.44	15.06	9.55	7.52
Merged-chr9-50593745-2	chr9	50593640	50593840	+	621.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	10109.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	10.09	6.79	7.42	9.65	7.36	17.25	10.96	4.82	8.85	4.52	7.03	2.82
Merged-chr12-54830757-2	chr12	54830666	54830866	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32111.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	10.9	3.77	5.7	4.02	5.73	7.84	6.31	7.01	14.36	7.53	11.05	6.27
Merged-chr3-96066252-2	chr3	96066155	96066355	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7800.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	8.08	3.02	2.28	2.41	5.32	9.09	0.0	5.52	6.69	8.03	8.54	8.14
Merged-chr15-58798225-2	chr15	58798117	58798317	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25210.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	1.21	1.51	0.0	4.42	6.14	5.33	3.65	4.85	8.65	9.54	9.55	8.77
Merged-chr12-3844554-1	chr12	3844454	3844654	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	17690.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.04	0.5	2.28	4.42	7.36	5.33	7.64	6.22	5.7	2.01	7.03	1.25
Merged-chr8-3677426-3	chr8	3677336	3677536	+	621.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025701, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	959.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	8.08	6.04	4.56	6.44	4.91	5.96	4.98	4.85	9.44	7.03	11.56	4.39
Merged-chr16-24361116-2	chr16	24361012	24361212	+	621.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32238.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	8.48	8.05	12.55	10.05	5.32	4.08	5.98	6.06	9.24	4.02	5.02	4.07
Merged-chr6-43303991-1	chr6	43303891	43304091	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_130869, exon 9 of 9)	exon (NM_130869, exon 9 of 9)	5563.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	3.63	0.5	5.7	6.03	2.45	5.02	1.33	3.67	2.95	3.01	4.52	3.76
Merged-chr8-3337167-1	chr8	3337067	3337267	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-16248.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	3.23	4.28	2.28	3.22	1.64	4.7	2.66	5.19	5.7	1.0	7.03	8.46
Merged-chr2-155295724-1	chr2	155295624	155295824	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001004721, intron 10 of 11)	intron (NM_001004721, intron 10 of 11)	19360.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	5.65	6.79	4.56	9.25	1.64	3.76	0.0	4.26	4.72	9.04	8.04	7.52
Merged-chr4-128668157-1	chr4	128668057	128668257	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	13455.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.44	4.53	0.0	2.41	6.14	2.82	9.3	4.96	2.36	1.51	5.53	2.82
Merged-chr2-128765821-1	chr2	128765721	128765921	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	MIRb|SINE|MIR	-52482.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.04	2.26	2.28	0.4	6.55	3.76	2.99	6.0	3.74	9.04	6.03	3.76
Merged-chr8-14823438-1	chr8	14823338	14823538	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65098.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	1.21	0.5	5.7	0.0	1.64	0.63	1.33	3.81	7.67	8.03	12.56	3.45
Merged-chr17-62883027-1	chr17	62882927	62883127	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1710.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	5.65	1.76	5.13	4.02	7.36	5.02	11.96	4.57	4.92	1.0	10.05	3.45
Merged-chr12-12412863-1	chr12	12412763	12412963	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20388.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	6.86	7.04	2.28	3.22	9.41	7.84	2.66	3.2	6.29	10.54	7.03	3.45
Merged-chr8-35424058-1	chr8	35423958	35424158	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48317.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	1.62	2.26	9.7	6.44	6.14	4.08	0.66	3.22	2.75	1.51	4.52	2.82
Merged-chr8-14676587-1	chr8	14676487	14676687	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	B4|SINE|B4	-211949.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.02	0.75	2.28	3.22	6.55	0.31	1.99	4.93	7.28	6.53	0.0	3.13
Merged-chr1-72641192-1	chr1	72641092	72641292	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	57941.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	2.42	5.28	0.0	3.22	0.82	2.82	5.31	1.85	9.24	5.52	8.54	5.64
Merged-chr3-157876885-1	chr3	157876785	157876985	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48178.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	1.62	4.02	3.42	6.84	0.82	4.08	6.98	4.12	1.57	1.51	2.51	0.94
Merged-chrX-56607568-1	chrX	56607468	56607668	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2213.0	NM_001358861	236794.0	Mm.17815	NM_172780	ENSMUSG00000060681	Slc9a6	3732426M05|6430520C02Rik|NHE6|mKIAA0267	solute carrier family 9 (sodium/hydrogen exchanger), member 6	protein-coding	2.02	2.01	3.42	0.8	1.64	1.57	4.98	6.11	2.75	8.03	6.53	4.07
Merged-chrX-109139446-1	chrX	109139346	109139546	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	44039.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	4.04	5.28	1.14	1.61	10.23	7.84	3.99	4.35	7.08	5.52	2.51	0.31
Merged-chr13-12680802-2	chr13	12680703	12680903	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30408.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	6.86	5.53	4.56	8.85	9.82	13.8	2.66	6.11	12.39	10.04	6.53	3.76
Merged-chr1-58364206-1	chr1	58364106	58364306	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008419, intron 34 of 35)	intron (NM_001008419, intron 34 of 35)	-28930.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	4.44	1.51	3.42	2.01	0.0	1.88	2.66	2.41	8.46	8.03	15.07	3.13
Merged-chr16-22616000-1	chr16	22615900	22616100	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346673, intron 2 of 23)	MIRc|SINE|MIR	10674.0	NR_105781	102465962.0		NR_105781	ENSMUSG00000098448	Mir6362	Gm27812|mmu-mir-6362	microRNA 6362	ncRNA	1.62	0.5	6.28	1.61	2.45	1.88	4.65	5.33	1.97	2.01	5.53	1.57
Merged-chr2-170451108-1	chr2	170451008	170451208	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23263.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	7.67	2.52	4.56	7.24	1.64	4.39	1.66	6.79	7.28	9.04	5.53	4.39
Merged-chr5-114824303-3	chr5	114824210	114824410	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	-842.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	8.88	3.27	4.56	1.61	7.36	11.6	5.98	2.97	7.67	10.04	6.03	11.59
Merged-chr11-120064109-1	chr11	120064009	120064209	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009734)	TTS (NM_009734)	-16964.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	1.62	3.27	1.14	2.82	7.36	3.76	3.65	6.56	8.46	4.02	6.53	3.76
Merged-chr10-60191970-1	chr10	60191870	60192070	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016803, intron 2 of 3)	intron (NM_016803, intron 2 of 3)	27290.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	4.85	6.29	0.57	4.83	5.32	4.7	5.31	5.5	7.87	0.0	3.52	6.27
Merged-chr5-100506027-2	chr5	100505945	100506145	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5406.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	8.88	7.55	7.42	2.82	4.5	7.53	2.99	1.23	11.01	10.04	14.07	8.46
Merged-chr3-8950669-1	chr3	8950569	8950769	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 2 of 5)	RMER15|LTR|ERVL	13477.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	2.26	4.56	7.24	1.64	5.02	1.66	3.5	11.8	4.02	8.54	3.45
Merged-chr8-83772832-1	chr8	83772732	83772932	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31521.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.06	2.52	5.7	2.41	3.68	3.45	9.63	5.89	4.13	8.03	5.02	4.39
Merged-chr19-57436644-1	chr19	57436544	57436744	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16262.0	NM_029839	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	2.02	2.52	1.71	0.8	3.68	2.82	6.64	5.38	1.57	0.0	1.51	0.94
Merged-chr1-24587478-1	chr1	24587378	24587578	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007733)	promoter-TSS (NM_007733)	-41.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	1.76	1.14	1.61	6.95	3.76	3.32	3.73	1.97	2.51	4.02	4.07
Merged-chr14-20702053-1	chr14	20701953	20702153	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025366)	promoter-TSS (NM_025366)	-974.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	4.85	17.36	1.14	3.62	3.27	23.52	9.97	2.94	13.77	8.54	5.53	4.07
Merged-chr13-97769942-1	chr13	97769842	97770042	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18830.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	4.44	3.02	7.99	7.64	1.64	1.25	5.98	8.92	2.56	0.0	1.0	0.63
Merged-chr18-62058282-1	chr18	62058182	62058382	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	105207.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	9.69	5.03	4.56	6.44	5.73	5.02	2.66	12.22	5.51	4.02	12.56	4.07
Merged-chrX-151522336-1	chrX	151522236	151522436	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113354, intron 1 of 21)	intron (NM_001113354, intron 1 of 21)	1664.0	NM_001113354	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	1.21	1.01	0.57	5.63	6.55	4.08	1.33	5.21	7.87	2.01	3.52	0.94
Merged-chr11-114967774-1	chr11	114967674	114967874	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7357.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	5.25	2.77	10.27	13.67	4.91	1.88	2.99	4.43	9.24	3.51	4.52	5.01
Merged-chr14-54764982-1	chr14	54764882	54765082	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16904.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.83	1.51	3.99	0.8	5.32	6.9	3.32	4.99	0.98	1.0	1.0	0.63
Merged-chr11-49869994-1	chr11	49869894	49870094	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 5 of 11)	intron (NM_016961, intron 5 of 11)	23243.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.65	7.29	5.13	1.61	15.55	4.39	1.33	3.06	11.21	6.03	5.53	6.89
Merged-chr10-7203979-1	chr10	7203879	7204079	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	8258.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.83	1.01	0.0	1.61	0.82	2.51	0.0	2.21	2.36	2.01	2.01	4.7
Merged-chr14-54407432-1	chr14	54407332	54407532	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2040.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.06	2.26	0.0	0.0	0.0	4.7	10.63	5.64	2.16	0.0	0.0	3.76
Merged-chr8-56295338-2	chr8	56295228	56295428	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	776.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.83	6.54	7.42	7.64	12.68	4.08	6.31	6.08	3.74	11.55	14.07	6.89
Merged-chr11-104289847-1	chr11	104289747	104289947	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038609, intron 3 of 11)	intron (NM_001038609, intron 3 of 11)	58411.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	4.04	4.53	0.57	1.61	1.64	2.51	4.32	2.78	5.9	1.0	2.51	0.94
Merged-chr13-78195118-1	chr13	78195018	78195218	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010151, intron 2 of 2)	CpG	1331.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	1.51	0.57	0.8	4.5	0.63	5.98	2.33	1.97	2.51	0.5	3.13
Merged-chr7-16307613-1	chr7	16307513	16307713	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-1970.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	3.23	3.77	2.28	3.62	5.73	6.9	2.33	4.43	8.26	3.01	7.03	4.7
Merged-chr4-134287748-1	chr4	134287648	134287848	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	98.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	12.92	12.58	13.69	10.05	22.91	6.9	8.97	9.31	13.37	18.08	8.54	13.16
Merged-chr3-69117392-1	chr3	69117292	69117492	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	9700.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	2.42	2.01	0.0	0.0	2.05	3.14	2.33	1.74	4.72	5.02	10.55	3.13
Merged-chr18-84852041-1	chr18	84851941	84852141	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	(TTTC)n|Simple_repeat|Simple_repeat	703.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	2.83	3.27	2.28	1.61	4.5	9.41	2.99	3.36	1.38	2.01	4.02	3.45
Merged-chr16-38225022-1	chr16	38224922	38225122	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 10 of 11)	MTE2a|LTR|ERVL-MaLR	69802.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	4.44	2.26	11.98	4.42	8.18	1.25	3.32	5.61	8.65	1.0	4.02	5.01
Merged-chr2-105674548-1	chr2	105674448	105674648	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1196.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	4.04	2.52	5.13	4.02	2.05	5.02	6.64	4.32	5.51	4.02	3.52	3.45
Merged-chr11-48924040-2	chr11	48923913	48924113	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045540, intron 1 of 2)	intron (NM_001045540, intron 1 of 2)	3169.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	6.06	4.53	7.99	2.01	5.73	4.08	3.65	4.79	2.16	2.51	6.53	7.21
Merged-chr11-82915157-1	chr11	82915057	82915257	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178680, intron 5 of 19)	intron (NM_178680, intron 5 of 19)	3904.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	2.02	3.77	6.85	3.22	7.77	5.33	0.33	6.39	10.82	3.51	7.54	4.39
Merged-chr5-30650004-1	chr5	30649904	30650104	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2065.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	2.42	3.02	1.71	4.02	1.23	6.27	2.66	5.33	4.13	3.01	1.51	3.13
Merged-chr3-96487865-1	chr3	96487765	96487965	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-35559.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.4	0.25	2.28	0.8	0.0	0.0	0.0	0.36	9.05	5.52	6.03	7.52
Merged-chr19-57643112-1	chr19	57643012	57643212	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 5 of 28)	intron (NM_181415, intron 5 of 28)	32078.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	1.62	3.27	0.0	0.0	6.14	5.64	1.33	3.25	0.98	4.52	3.01	1.25
Merged-chr12-75667121-1	chr12	75667021	75667221	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	2416.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	5.25	0.75	0.0	2.82	2.05	3.14	7.31	5.55	5.9	1.51	0.5	1.25
Merged-chr9-7836411-1	chr9	7836311	7836511	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007465, intron 1 of 7)	intron (NM_007465, intron 1 of 7)	395.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	6.86	10.06	8.56	2.01	12.27	7.53	8.3	5.92	10.82	6.03	10.05	5.01
Merged-chr18-36541576-1	chr18	36541476	36541676	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271547, intron 19 of 19)	intron (NM_001271547, intron 19 of 19)	13424.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	6.46	5.28	1.14	4.83	2.05	13.17	3.65	5.41	5.9	5.02	4.52	2.82
Merged-chr4-150824255-1	chr4	150824155	150824355	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29541.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	1.21	4.53	1.14	4.02	3.68	5.64	0.66	4.91	5.51	3.51	3.01	2.19
Merged-chr14-16367155-1	chr14	16367055	16367255	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	B3|SINE|B2	1949.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	1.62	6.04	3.42	2.41	8.59	10.35	3.65	3.9	5.7	10.54	7.54	1.88
Merged-chr5-65429456-1	chr5	65429356	65429556	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009466, intron 1 of 11)	intron (NM_009466, intron 1 of 11)	6386.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	1.21	3.52	4.56	2.41	7.36	3.76	0.0	1.88	3.15	0.5	2.01	1.88
Merged-chr1-127827502-1	chr1	127827402	127827602	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011737, intron 6 of 9)	intron (NM_011737, intron 6 of 9)	12788.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	6.46	5.79	4.56	4.02	9.0	6.27	3.32	5.61	9.44	2.51	7.03	4.7
Merged-chr16-14293045-1	chr16	14292945	14293145	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1637.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	1.21	0.5	3.42	3.22	1.64	1.88	0.66	2.64	3.74	2.01	3.01	3.13
Merged-chr12-4717583-1	chr12	4717483	4717683	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029107, intron 7 of 7)	intron (NM_029107, intron 7 of 7)	20800.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	6.06	3.77	2.28	0.0	5.73	4.39	5.31	4.79	1.18	5.02	5.53	2.51
Merged-chr14-64747353-1	chr14	64747253	64747453	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 17 of 39)	CT-rich|Low_complexity|Low_complexity	94822.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.42	2.52	8.56	3.22	2.86	0.63	6.98	4.88	9.24	2.01	0.5	3.76
Merged-chr5-113787124-1	chr5	113787024	113787224	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	13228.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.81	3.02	11.98	4.83	2.45	7.21	5.98	1.82	6.49	6.03	5.02	2.82
Merged-chr11-54927979-1	chr11	54927879	54928079	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271456, intron 9 of 18)	intron (NM_001271456, intron 9 of 18)	25125.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	5.65	1.76	6.28	0.4	8.18	4.39	2.66	4.43	9.83	9.04	5.02	1.88
Merged-chrX-9450136-1	chrX	9450036	9450236	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007807, intron 7 of 12)	intron (NM_007807, intron 7 of 12)	19188.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	5.65	1.76	0.0	0.0	4.91	5.64	4.98	11.36	8.06	3.51	7.03	1.57
Merged-chr1-121155543-2	chr1	121155442	121155642	+	620.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68137.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	8.08	8.8	12.55	11.66	0.41	0.63	4.32	4.4	3.34	1.0	5.02	2.82
Merged-chr2-73534890-2	chr2	73534772	73534972	+	620.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5385.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.46	7.8	11.41	2.01	0.82	1.57	5.31	5.66	4.52	4.52	2.51	2.19
Merged-chr7-55956982-3	chr7	55956888	55957088	+	620.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023647, intron 1 of 6)	MTD|LTR|ERVL-MaLR	5505.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.67	10.31	9.13	8.45	3.68	7.21	1.99	5.27	10.82	8.03	10.05	6.58
Merged-chr3-95665289-2	chr3	95665186	95665386	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	6565.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.48	8.8	7.99	4.83	7.36	7.84	0.33	2.64	7.87	8.54	8.04	10.02
Merged-chr1-52166875-1	chr1	52166775	52166975	+	620.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081081, intron 17 of 17)	intron (NM_001081081, intron 17 of 17)	47253.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.42	4.02	6.85	0.0	8.59	7.21	9.63	5.24	1.57	2.01	9.04	2.19
Merged-chr11-104319623-2	chr11	104319525	104319725	+	620.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038609, intron 9 of 11)	intron (NM_001038609, intron 9 of 11)	88189.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	10.09	2.52	2.85	1.61	8.18	5.64	3.32	5.55	8.85	2.51	9.04	4.7
Merged-chr11-114960529-2	chr11	114960403	114960603	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199225)	promoter-TSS (NM_199225)	-86.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	5.25	7.29	9.13	8.04	11.45	6.59	4.32	4.29	7.08	5.02	5.53	10.65
Merged-chr5-27995360-2	chr5	27995272	27995472	+	620.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76040.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	6.06	4.53	4.56	5.63	10.64	5.96	6.64	3.95	8.06	15.06	13.57	10.34
Merged-chr15-98805533-2	chr15	98805441	98805641	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	2384.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	14.13	7.55	4.56	11.66	2.86	11.6	6.98	4.32	8.85	4.52	8.04	5.33
Merged-chr1-88274821-2	chr1	88274722	88274922	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	2735.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	4.04	5.28	6.85	10.86	7.77	3.76	10.96	5.55	5.11	7.03	4.02	6.89
Merged-chr4-141431250-1	chr4	141431150	141431350	+	620.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4855.0	NM_001033374	277744.0	Mm.33952	NM_001033374	ENSMUSG00000070637	Srarp	Gm694	steroid receptor associated and regulated protein	protein-coding	6.46	5.28	5.7	3.22	9.41	13.48	3.32	5.1	13.37	3.51	2.51	0.94
Merged-chr5-77464991-1	chr5	77464891	77465091	+	620.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131050)	promoter-TSS (NR_131050)	-497.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	1.62	4.78	5.7	6.03	6.55	5.64	14.95	6.42	3.54	4.02	13.06	4.39
Merged-chr3-141862987-2	chr3	141862864	141863064	+	620.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355043, intron 6 of 10)	intron (NM_001355043, intron 6 of 10)	68456.0	NM_001355043	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	6.46	4.53	2.28	8.85	1.23	3.76	1.33	3.42	11.41	10.04	12.56	10.34
Merged-chr18-54986592-1	chr18	54986492	54986692	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	3588.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.62	4.78	7.99	4.42	12.68	2.82	8.3	4.85	5.31	4.52	5.02	3.45
Merged-chr1-91269174-2	chr1	91269072	91269272	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 5 of 10)	intron (NM_001355764, intron 5 of 10)	18606.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	14.54	7.04	10.84	14.48	3.68	4.39	1.33	7.77	4.33	3.01	7.54	3.76
Merged-chr9-63129975-1	chr9	63129875	63130075	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17005.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	4.44	2.26	0.57	0.8	6.14	5.33	5.31	7.12	4.52	3.01	3.52	4.7
Merged-chr14-77783424-1	chr14	77783324	77783524	+	620.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15544.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	4.04	1.51	0.57	0.8	10.23	3.76	4.65	2.75	8.85	9.04	13.06	6.58
Merged-chr5-136202049-1	chr5	136201949	136202149	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3095.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	8.48	5.28	6.28	0.8	4.91	5.64	3.99	1.79	5.51	9.04	9.04	5.01
Merged-chr13-75796218-2	chr13	75796117	75796317	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43668.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.23	2.01	8.56	2.41	6.55	6.27	4.98	4.51	9.83	5.52	11.05	5.01
Merged-chr3-109340030-2	chr3	109339918	109340118	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-665.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	15.75	4.53	6.28	7.24	10.23	3.14	1.33	6.11	9.24	7.53	5.02	3.13
Merged-chr10-13913909-2	chr10	13913816	13914016	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	42636.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	7.67	2.52	5.7	8.04	11.45	2.51	3.99	6.64	9.05	6.53	9.04	6.27
Merged-chr16-65394630-1	chr16	65394530	65394730	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125999.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	6.46	4.28	1.14	3.22	9.82	0.63	4.32	5.05	3.93	3.51	10.05	5.33
Merged-chr4-119962956-1	chr4	119962856	119963056	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	148278.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	1.62	2.52	1.14	1.61	5.73	5.02	1.66	5.1	1.57	4.02	5.02	2.51
Merged-chr9-47739706-1	chr9	47739606	47739806	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	78502.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.85	3.02	3.42	1.61	7.36	1.25	7.97	4.82	3.15	8.54	4.52	3.45
Merged-chr14-32888678-1	chr14	32888578	32888778	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178791, intron 3 of 7)	intron (NM_178791, intron 3 of 7)	31922.0	NM_001361602	320736.0	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	8.08	1.01	6.28	2.41	0.0	5.64	4.65	6.45	2.36	5.52	5.53	1.25
Merged-chr2-33176677-1	chr2	33176577	33176777	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290570, intron 7 of 16)	MIR3|SINE|MIR	-39284.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	6.46	8.8	10.84	7.24	1.23	3.14	2.66	7.01	5.51	3.51	7.03	8.14
Merged-chr10-34233701-1	chr10	34233601	34233801	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-26150.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.65	9.31	10.84	0.8	4.91	6.27	0.0	3.81	8.26	6.03	3.01	3.13
Merged-chr4-120975160-1	chr4	120975060	120975260	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133716, intron 6 of 9)	intron (NM_133716, intron 6 of 9)	-1838.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	4.04	3.52	5.7	8.85	4.91	4.39	6.98	6.14	4.52	1.51	2.51	5.01
Merged-chr2-164009220-1	chr2	164009120	164009320	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	14023.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	2.02	4.02	5.7	4.83	8.18	5.02	3.65	5.3	5.11	6.03	2.01	4.7
Merged-chr19-44404131-1	chr19	44404031	44404231	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009127, intron 2 of 5)	MIRc|SINE|MIR	3578.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.62	2.26	4.56	0.8	7.36	4.7	4.98	6.53	2.36	0.5	2.01	5.01
Merged-chr2-6258181-1	chr2	6258081	6258281	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45187.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	2.83	3.27	9.7	2.01	6.14	5.96	2.66	6.53	2.16	2.51	10.05	6.27
Merged-chr12-117478124-2	chr12	117478030	117478230	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38349.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.42	3.02	1.14	2.01	6.95	5.64	3.65	5.07	3.74	14.56	11.05	1.88
Merged-chr17-84182922-2	chr17	84182809	84183009	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5038.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.86	7.55	3.42	5.23	4.91	8.78	7.31	4.6	10.42	5.52	0.5	5.01
Merged-chr1-74788781-2	chr1	74788696	74788896	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3223.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	7.27	5.28	14.26	2.41	5.32	9.09	2.66	3.9	10.62	9.54	4.52	5.64
Merged-chr12-3791347-2	chr12	3791258	3791458	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15622.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.08	7.04	2.28	8.85	2.86	5.02	3.32	3.79	9.44	10.04	8.54	3.76
Merged-chr18-68859809-1	chr18	68859709	68859909	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91719.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	5.25	1.01	2.28	10.46	0.82	3.14	5.31	5.27	0.2	0.0	0.5	0.63
Merged-chr1-51931545-2	chr1	51931430	51931630	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15552.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.65	8.55	17.11	6.44	3.27	2.82	1.99	3.84	12.78	12.55	7.03	10.96
Merged-chr4-97764802-2	chr4	97764692	97764892	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-12834.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.06	2.52	11.41	5.23	6.95	3.76	1.99	6.36	10.42	3.51	9.55	10.34
Merged-chr3-35931494-2	chr3	35931403	35931603	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	831.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	1.62	0.25	5.7	0.8	3.27	6.9	1.66	4.37	8.85	7.03	2.01	1.88
Merged-chr11-54535141-2	chr11	54535022	54535222	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	12277.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.46	3.52	1.14	1.61	3.27	9.41	2.66	5.21	12.78	5.02	3.52	10.02
Merged-chr1-82797246-2	chr1	82797151	82797351	+	620.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-28795.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.85	2.52	3.42	2.01	6.55	10.03	9.63	2.52	19.28	20.59	10.05	5.95
Merged-chr2-125777188-2	chr2	125777087	125777287	+	620.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	5683.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	4.85	8.05	21.68	8.85	3.27	1.88	2.66	6.0	12.78	0.0	16.08	7.52
Merged-chr16-91905406-2	chr16	91905354	91905554	+	620.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 34 of 39)	exon (NM_010587, exon 34 of 39)	26176.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.27	8.05	0.0	6.03	4.5	7.84	5.98	4.18	5.31	5.02	7.03	5.95
Merged-chr16-38130735-2	chr16	38130640	38130840	+	620.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-41480.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	7.67	4.28	9.7	7.64	4.09	8.15	4.32	4.26	10.82	12.05	8.04	6.58
Merged-chr10-121585382-1	chr10	121585282	121585482	+	620.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	1412.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.04	5.28	0.0	3.62	4.91	10.66	8.64	3.36	4.92	8.54	3.01	2.82
Merged-chr11-100525127-3	chr11	100525009	100525209	+	620.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	2891.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	9.69	6.54	14.83	2.82	7.36	5.64	3.65	8.89	11.01	8.54	8.04	10.02
Merged-chr1-173878074-1	chr1	173877974	173878174	+	620.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	Lx8b|LINE|L1	2113.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	6.46	1.51	1.71	3.22	9.0	7.21	7.31	5.55	2.36	2.01	3.01	4.39
Merged-chr19-46131827-2	chr19	46131731	46131931	+	620.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007703)	promoter-TSS (NM_007703)	-68.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	10.09	2.77	3.99	4.83	6.14	7.84	2.66	8.58	4.13	6.03	11.56	6.27
Merged-chr2-164470381-2	chr2	164470310	164470510	+	620.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001271575, exon 5 of 5)	3' UTR (NM_001271575, exon 5 of 5)	3314.0	NM_001271575	73603.0	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	6.06	10.06	8.56	4.83	10.64	7.84	3.32	4.54	11.21	7.53	7.54	2.82
Merged-chr7-101679779-2	chr7	101679663	101679863	+	620.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009191, intron 2 of 15)	intron (NM_009191, intron 2 of 15)	15995.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	8.48	6.04	5.7	4.42	3.68	6.9	4.65	6.36	6.29	6.03	6.03	5.64
Merged-chr6-134016422-3	chr6	134016309	134016509	+	620.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-19291.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	13.73	9.31	7.99	2.41	9.0	8.15	1.66	1.99	9.24	18.08	6.53	4.39
Merged-chr5-124352374-2	chr5	124352278	124352478	+	620.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2250.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	7.67	6.29	2.85	4.02	6.55	6.59	4.98	4.93	4.13	2.51	3.01	2.19
Merged-chr17-24548593-2	chr17	24548497	24548697	+	620.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1353.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	6.06	4.02	2.28	9.65	9.0	4.39	5.31	6.25	7.28	2.01	10.05	5.33
Merged-chr4-33253315-3	chr4	33253209	33253409	+	620.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4522.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	1.21	5.53	16.54	9.25	3.27	9.09	1.99	4.43	11.41	9.04	14.07	5.64
Merged-chr2-166035847-1	chr2	166035747	166035947	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	43210.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.02	1.51	0.57	1.61	1.64	3.76	2.99	2.5	5.51	3.51	3.01	5.33
Merged-chr15-4728409-1	chr15	4728309	4728509	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	1199.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	2.42	1.51	1.14	1.61	4.91	1.25	3.65	5.72	4.13	0.5	2.01	3.76
Merged-chr10-22007986-1	chr10	22007886	22008086	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13320.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	8.08	1.51	7.99	8.45	5.73	5.64	0.33	4.63	8.06	3.51	7.03	7.52
Merged-chr5-145179764-1	chr5	145179664	145179864	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291249, intron 7 of 7)	IMPB_01|Satellite|Satellite	11828.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	8.88	10.82	2.28	5.63	7.36	5.02	4.65	3.53	1.77	3.51	3.52	2.51
Merged-chr11-77317951-1	chr11	77317851	77318051	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	MLT2B3|LTR|ERVL	-30329.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	8.48	4.53	2.85	9.25	4.5	2.82	4.65	4.82	5.51	7.53	1.0	2.51
Merged-chrX-7851089-1	chrX	7850989	7851189	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290537, intron 2 of 9)	MTEa-int|LTR|ERVL-MaLR	9007.0	NM_001290537	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	2.02	1.01	2.85	2.01	6.95	3.76	1.66	1.71	1.18	5.52	4.02	1.57
Merged-chr11-26129232-1	chr11	26129132	26129332	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	BGLII|LTR|ERVK	-73008.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.5	4.56	8.04	10.64	4.08	7.64	5.21	6.69	6.53	13.57	7.52
Merged-chr3-55452114-1	chr3	55452014	55452214	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357475, intron 5 of 16)	intron (NM_001357475, intron 5 of 16)	-9614.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.4	1.51	2.85	0.0	5.32	7.21	1.99	4.26	7.08	7.53	11.05	7.83
Merged-chr1-105781213-2	chr1	105781173	105781373	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	550.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.86	4.53	1.71	5.23	2.45	2.2	0.66	5.97	12.78	3.01	3.52	2.82
Merged-chr14-103899354-1	chr14	103899254	103899454	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54878.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	1.62	2.52	1.14	0.0	3.27	8.47	1.99	5.07	3.34	1.0	1.0	2.82
Merged-chr7-132308517-1	chr7	132308417	132308617	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-7147.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.23	2.77	0.0	10.46	9.41	1.88	6.64	5.41	3.34	2.51	2.51	3.45
Merged-chr4-134946173-1	chr4	134946073	134946273	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	15193.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	5.65	4.28	3.42	3.62	2.05	8.78	2.33	2.3	7.47	11.55	10.55	5.01
Merged-chr4-129491913-1	chr4	129491813	129492013	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001085491)	TTS (NM_001085491)	723.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	9.29	6.54	5.7	2.82	2.05	10.03	1.33	4.15	4.33	2.51	4.02	7.21
Merged-chr15-30686771-1	chr15	30686671	30686871	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	(TG)n|Simple_repeat|Simple_repeat	-352355.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.42	4.28	1.14	0.8	5.73	7.53	1.33	5.92	2.56	2.51	1.51	4.39
Merged-chr10-8880388-1	chr10	8880288	8880488	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	(TG)n|Simple_repeat|Simple_repeat	5682.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.83	8.05	8.56	8.45	4.09	9.72	4.98	2.02	2.95	4.52	1.51	3.13
Merged-chr14-55490629-1	chr14	55490529	55490729	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_155103)	promoter-TSS (NR_155103)	-22.0	NR_155103	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	15.75	5.03	6.85	2.01	6.55	7.21	5.65	4.79	5.7	7.03	0.0	6.27
Merged-chr1-93654171-1	chr1	93654071	93654271	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-18444.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	4.85	4.53	3.42	5.63	10.64	8.78	4.65	4.43	3.54	4.52	5.02	3.76
Merged-chr11-70608940-1	chr11	70608840	70609040	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001045959, exon 19 of 32)	exon (NM_001045959, exon 19 of 32)	-6954.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	8.88	2.52	3.99	4.42	5.73	3.14	3.32	3.56	7.47	4.52	14.07	1.88
Merged-chr11-69364698-1	chr11	69364598	69364798	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146019, exon 2 of 40)	exon (NM_146019, exon 2 of 40)	4728.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	2.02	5.28	0.0	0.0	3.27	4.7	1.99	4.54	5.51	6.53	4.52	3.76
Merged-chr9-21309330-1	chr9	21309230	21309430	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110300, intron 3 of 10)	intron (NM_001110300, intron 3 of 10)	3003.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	3.63	3.77	4.56	2.41	2.86	6.9	1.33	3.87	4.33	0.0	2.51	5.01
Merged-chr8-125815830-1	chr8	125815730	125815930	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175561, exon 21 of 34)	exon (NM_175561, exon 21 of 34)	81627.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.81	0.75	1.71	1.21	0.82	1.25	5.65	6.08	1.77	1.51	4.02	2.82
Merged-chr17-71531696-1	chr17	71531596	71531796	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4839.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.0	1.51	0.57	0.0	2.45	0.63	0.0	0.0	6.88	8.03	23.62	7.52
Merged-chr11-98782513-4	chr11	98782374	98782574	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7097.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	2.02	1.26	5.7	1.21	3.68	0.0	1.33	5.36	3.34	4.52	5.53	2.19
Merged-chr13-6060098-1	chr13	6059998	6060198	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	198609.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.04	5.53	7.42	6.84	4.09	4.08	4.65	2.55	8.46	4.02	6.03	1.25
Merged-chr2-53007384-1	chr2	53007284	53007484	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	149516.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	1.62	2.52	1.14	10.86	4.5	4.7	0.66	5.55	5.11	5.52	23.11	6.89
Merged-chr3-18369052-1	chr3	18368952	18369152	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	111425.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	15.75	8.05	6.85	6.84	0.0	1.88	1.0	2.1	3.54	0.5	7.54	3.76
Merged-chr16-52093103-2	chr16	52093019	52093219	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61570.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.44	3.02	4.56	1.61	6.14	2.82	4.65	6.17	10.03	8.54	10.05	4.07
Merged-chr9-95547184-1	chr9	95547084	95547284	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12633.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	11.31	6.79	13.69	3.62	6.14	14.74	2.99	5.55	11.21	16.07	11.05	6.27
Merged-chr5-137779288-1	chr5	137779188	137779388	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027242, intron 1 of 3)	CpG	384.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	8.08	9.81	7.42	3.22	8.18	5.96	1.0	6.56	6.88	4.52	11.56	5.01
Merged-chr15-80007252-1	chr15	80007152	80007352	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	MTD|LTR|ERVL-MaLR	7556.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.81	0.0	0.0	3.22	3.27	3.14	4.65	6.25	0.39	1.51	1.51	0.94
Merged-chr8-90914163-1	chr8	90914063	90914263	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-18086.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.04	3.27	3.42	3.22	5.32	2.51	5.31	9.25	5.7	3.51	2.51	0.94
Merged-chr15-58244317-1	chr15	58244217	58244417	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29425.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	2.02	1.76	5.7	0.0	3.27	5.96	3.32	5.69	8.06	7.53	9.55	5.33
Merged-chr3-9341706-1	chr3	9341606	9341806	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61372.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	6.86	2.77	2.28	0.4	5.32	6.27	1.99	6.11	4.72	0.5	2.51	2.82
Merged-chr15-74999892-1	chr15	74999792	74999992	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1861.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.81	0.0	1.71	0.0	2.45	1.88	4.98	0.36	20.26	9.04	10.05	8.77
Merged-chr18-62980627-2	chr18	62980521	62980721	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028017, intron 2 of 11)	intron (NM_028017, intron 2 of 11)	2705.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	2.83	7.8	6.28	11.26	1.23	6.59	2.33	3.9	7.47	11.55	8.54	7.83
Merged-chr8-33902628-1	chr8	33902528	33902728	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	27235.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	1.62	1.01	1.14	0.0	0.0	5.96	2.66	0.39	11.41	4.02	14.07	9.4
Merged-chr2-38072248-1	chr2	38072148	38072348	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	215136.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.81	2.26	3.99	5.23	9.82	9.09	2.66	2.58	5.7	4.02	8.54	3.13
Merged-chr19-59076335-2	chr19	59076234	59076434	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175172)	promoter-TSS (NM_175172)	-265.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	6.46	5.28	3.42	0.4	2.05	5.02	2.66	8.64	10.82	10.04	5.53	4.7
Merged-chr4-59444204-1	chr4	59444104	59444304	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-5571.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.27	2.77	1.71	2.41	4.91	4.39	4.65	3.93	4.52	3.01	1.0	3.45
Merged-chr11-68654193-1	chr11	68654093	68654293	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA7|LINE|L1	-37722.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.81	0.5	0.0	1.21	6.14	2.82	1.33	4.26	5.51	3.51	2.51	0.63
Merged-chr16-95743198-1	chr16	95743098	95743298	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	40791.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.25	10.31	7.99	3.22	2.86	14.74	3.65	0.76	3.15	5.02	11.56	2.19
Merged-chr16-43948024-1	chr16	43947924	43948124	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	MER103C|DNA|hAT-Charlie	31026.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	3.23	2.52	5.7	1.61	1.64	5.96	1.99	4.18	4.72	0.0	3.01	1.57
Merged-chr16-11708988-1	chr16	11708888	11709088	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70714.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	1.21	1.76	6.85	2.41	2.86	4.7	5.98	5.55	2.95	4.02	5.53	3.76
Merged-chr16-21815079-2	chr16	21814951	21815151	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	20704.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	5.25	4.53	7.99	4.83	4.09	8.15	3.99	5.55	7.08	10.54	10.05	3.13
Merged-chr15-74673156-1	chr15	74673056	74673256	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-586.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	4.44	8.05	6.85	9.65	4.09	2.51	2.99	6.45	5.7	5.02	10.05	4.07
Merged-chr19-3861305-1	chr19	3861205	3861405	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271496, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	9532.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	8.88	5.53	3.42	7.64	6.14	4.7	0.66	2.05	5.11	3.01	1.51	4.7
Merged-chr16-45630531-2	chr16	45630446	45630646	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 4 of 5)	intron (NM_145389, intron 4 of 5)	20106.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	4.04	6.54	0.0	5.63	5.73	4.08	2.66	11.75	10.42	5.52	20.6	4.07
Merged-chr10-100490976-1	chr10	100490876	100491076	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	2687.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	7.27	4.53	3.42	1.21	0.82	9.09	0.66	5.52	7.67	5.52	19.09	3.13
Merged-chrX-162941464-1	chrX	162941364	162941564	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358398, intron 11 of 18)	intron (NM_001358398, intron 11 of 18)	23135.0	NM_009789	12309.0	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	2.42	1.01	1.14	0.4	4.91	5.96	3.65	5.24	2.95	2.01	6.03	3.45
Merged-chr3-129590941-1	chr3	129590841	129591041	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-58553.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	2.02	2.26	6.85	10.46	10.64	5.96	9.63	3.48	5.9	0.0	2.51	0.94
Merged-chr13-64120951-1	chr13	64120851	64121051	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 2 of 11)	intron (NM_001001321, intron 2 of 11)	8379.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.42	1.76	2.28	3.22	2.05	7.21	5.31	3.7	5.9	4.52	14.07	6.58
Merged-chr6-24531207-1	chr6	24531107	24531307	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	3063.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	3.23	5.28	1.14	2.82	8.59	8.47	8.64	5.66	4.72	7.53	3.01	6.89
Merged-chr14-30881472-1	chr14	30881372	30881572	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181390, exon 3 of 3)	3' UTR (NM_181390, exon 3 of 3)	2215.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	1.62	3.52	4.56	1.61	0.0	7.53	0.66	4.01	4.33	1.51	2.51	0.63
Merged-chr6-115908759-1	chr6	115908659	115908859	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-23168.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	6.46	3.52	5.7	4.02	9.82	7.53	1.99	3.59	3.15	4.02	3.01	1.57
Merged-chr12-57231619-1	chr12	57231519	57231719	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	MTD|LTR|ERVL-MaLR	1194.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	8.88	6.29	14.83	5.23	12.68	3.45	4.32	4.82	8.06	4.52	8.04	4.7
Merged-chr11-11513534-3	chr11	11513418	11513618	+	619.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347068, intron 8 of 8)	intron (NM_001347068, intron 8 of 8)	24252.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.23	2.52	4.56	8.85	5.32	0.94	5.98	6.45	6.69	4.02	9.55	8.14
Merged-chr7-106640987-1	chr7	106640887	106641087	+	619.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277182, intron 1 of 3)	MLT2B2|LTR|ERVL	3658.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.0	1.51	0.0	5.63	0.41	0.94	1.66	2.07	9.05	13.05	12.06	10.02
Merged-chr13-58687092-2	chr13	58686991	58687191	+	619.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	75220.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	2.83	5.53	10.84	7.24	9.41	2.2	7.31	5.72	1.38	2.51	6.53	5.64
Merged-chrX-8193538-2	chrX	8193419	8193619	+	619.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007898)	promoter-TSS (NM_007898)	-7.0	NM_007898	13595.0	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	4.04	2.01	6.85	9.25	8.18	13.17	2.66	7.18	4.92	5.52	10.05	6.27
Merged-chr14-14104297-1	chr14	14104197	14104397	+	619.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139227, exon 12 of 12)	3' UTR (NM_139227, exon 12 of 12)	16607.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	1.62	0.0	0.0	2.41	1.23	1.25	1.33	1.6	8.26	13.56	15.07	8.14
Merged-chr6-83696897-3	chr6	83696791	83696991	+	619.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002871, intron 3 of 5)	ID_B1|SINE|B4	13934.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	9.29	7.55	9.7	10.46	6.55	5.64	2.66	9.5	7.47	3.51	10.05	3.76
Merged-chr4-141536408-1	chr4	141536308	141536508	+	619.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	CpG	2189.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.02	2.26	6.85	2.41	6.55	8.78	5.31	4.18	4.52	11.05	7.03	5.64
Merged-chr10-80560827-1	chr10	80560727	80560927	+	619.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	733.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	4.04	6.79	4.56	2.01	3.27	13.48	3.65	1.79	13.57	11.55	13.57	4.07
Merged-chr8-126695071-3	chr8	126694986	126695186	+	619.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101650.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.5	10.06	13.12	10.46	10.64	4.08	1.99	5.36	11.6	9.04	5.53	9.4
Merged-chr17-27908206-2	chr17	27908096	27908296	+	619.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1046.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	15.34	9.56	13.12	3.22	8.59	10.98	3.32	2.97	6.29	4.52	3.52	3.76
Merged-chr10-52385457-2	chr10	52385352	52385552	+	619.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3328.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	5.65	3.02	5.7	6.84	9.41	7.53	3.65	6.53	7.28	7.03	16.58	5.64
Merged-chr11-110941740-3	chr11	110941649	110941849	+	619.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26284.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	10.5	7.8	12.55	12.07	6.14	9.09	3.32	8.64	15.93	9.04	8.04	1.57
Merged-chr2-129634112-2	chr2	129634012	129634212	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38650.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.04	6.04	9.7	2.41	9.82	9.41	2.33	5.5	5.11	3.01	5.53	3.45
Merged-chr13-93810565-2	chr13	93810447	93810647	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 4 of 7)	L1_Mus2|LINE|L1	19770.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	5.65	6.54	9.13	8.85	6.95	5.96	7.97	5.41	5.11	10.54	11.05	4.07
Merged-chr14-45691110-3	chr14	45691009	45691209	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32966.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	9.29	8.55	4.56	12.07	5.73	7.53	7.97	6.48	10.42	3.01	9.04	5.95
Merged-chr16-36776256-1	chr16	36776156	36776356	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	8706.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.04	1.01	3.42	1.21	1.64	10.03	5.98	4.51	5.11	8.54	4.52	4.7
Merged-chr10-43707965-1	chr10	43707865	43708065	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38193.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	1.62	7.29	4.56	8.04	7.36	5.02	4.98	6.34	7.47	8.54	8.04	2.82
Merged-chr14-103345983-2	chr14	103345858	103346058	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	842.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.44	8.05	13.69	4.42	9.41	5.33	4.98	7.07	6.49	9.54	12.06	9.71
Merged-chr10-79712610-1	chr10	79712510	79712710	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009768)	TTS (NM_009768)	-4024.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	7.27	1.76	2.28	2.41	2.45	9.09	1.99	3.93	5.31	3.01	6.03	3.45
Merged-chr8-124278549-1	chr8	124278449	124278649	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	47155.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.02	1.51	1.14	4.83	2.05	4.39	5.31	4.4	0.79	1.0	0.0	1.25
Merged-chr19-37696706-2	chr19	37696551	37696751	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1157.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	2.02	5.28	1.14	4.02	1.23	2.82	4.65	1.46	3.15	5.02	7.54	6.27
Merged-chr10-3943645-2	chr10	3943540	3943740	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-29435.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	5.25	1.01	2.85	5.23	5.73	2.51	3.32	5.19	4.33	3.51	12.56	6.27
Merged-chr12-110851573-1	chr12	110851473	110851673	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1294.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	4.85	2.52	13.12	5.63	10.64	1.57	4.32	5.24	5.11	3.01	5.02	8.14
Merged-chrX-12590806-1	chrX	12590706	12590906	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	3047.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	2.42	2.77	2.28	6.44	2.86	6.59	3.99	4.82	2.16	5.52	0.5	3.76
Merged-chr1-74379731-2	chr1	74379620	74379820	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	4517.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.25	4.78	5.13	4.42	11.05	3.14	3.65	4.63	19.87	9.04	12.06	5.01
Merged-chr15-60629083-1	chr15	60628983	60629183	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-193882.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	2.02	5.03	4.56	0.8	3.27	9.09	8.3	3.93	3.54	4.52	6.53	2.51
Merged-chr5-121872465-2	chr5	121872371	121872571	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	23474.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	9.29	1.76	11.41	2.41	4.5	1.88	0.0	3.14	2.95	5.02	1.51	5.33
Merged-chr7-101918259-2	chr7	101918144	101918344	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162974, intron 2 of 3)	intron (NM_001162974, intron 2 of 3)	2981.0	NM_001357584	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.81	1.76	5.7	5.23	7.77	8.15	5.65	6.06	8.06	9.54	11.05	4.07
Merged-chr3-122918736-1	chr3	122918636	122918836	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046036, intron 2 of 5)	intron (NR_046036, intron 2 of 5)	5380.0	NR_046036	74057.0	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	4.04	2.26	2.28	6.03	0.82	3.76	5.31	4.99	2.95	5.52	2.51	4.7
Merged-chr1-155097450-2	chr1	155097351	155097551	+	619.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2185.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.27	3.27	5.7	4.42	6.55	5.02	5.65	6.79	6.88	11.05	9.55	7.83
Merged-chr10-127671644-1	chr10	127671544	127671744	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	4521.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	4.44	4.28	1.14	2.82	3.27	5.33	4.65	2.94	7.47	5.52	5.02	4.39
Merged-chr4-135895406-1	chr4	135895306	135895506	+	619.333313	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_009924, exon 1 of 2)	5' UTR (NM_009924, exon 1 of 2)	217.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	9.29	6.04	4.56	8.45	2.05	4.7	3.32	2.07	3.15	3.01	3.52	2.82
Merged-chr2-92486521-1	chr2	92486421	92486621	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26003.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	8.08	1.76	3.42	4.02	8.18	6.9	2.66	4.54	3.74	4.02	8.04	2.82
Merged-chr7-118996321-3	chr7	118996191	118996391	+	619.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1080.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	8.88	6.04	6.85	4.83	4.5	5.33	6.31	10.37	9.64	12.55	7.54	4.7
Merged-chr14-36861866-1	chr14	36861766	36861966	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57669.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	1.21	3.02	3.42	1.61	6.55	2.51	3.32	4.65	5.7	2.01	1.0	4.07
Merged-chr1-189867184-1	chr1	189867084	189867284	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	55107.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.81	0.0	3.99	1.61	6.14	6.9	5.65	4.46	3.15	0.5	2.01	2.51
Merged-chr17-25474879-2	chr17	25474789	25474989	+	619.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027951, intron 4 of 5)	CpG	3299.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	9.69	9.31	3.42	8.04	9.41	9.72	4.32	6.31	8.06	6.03	9.04	6.58
Merged-chr8-104170718-3	chr8	104170610	104170810	+	619.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001141922, exon 1 of 7)	5' UTR (NM_001141922, exon 1 of 7)	197.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	8.48	5.28	2.28	6.44	8.18	6.9	3.99	7.91	8.26	7.53	15.07	4.07
Merged-chr11-81996336-2	chr11	81996244	81996444	+	619.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27948.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	6.46	9.56	6.85	7.24	9.41	10.66	5.65	4.12	9.83	18.58	14.07	6.27
Merged-chr4-59181495-2	chr4	59181376	59181576	+	619.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8074.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.81	0.25	2.28	1.21	6.55	4.08	2.99	5.33	13.37	9.04	9.55	6.89
Merged-chr4-105260461-1	chr4	105260361	105260561	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103114.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.42	2.01	4.56	0.8	3.27	6.27	4.98	5.86	2.36	6.03	1.51	1.88
Merged-chr18-75139948-1	chr18	75139848	75140048	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	121176.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	8.48	6.04	7.99	5.23	4.09	8.15	5.98	3.95	6.1	6.03	8.04	5.33
Merged-chr4-32411443-1	chr4	32411343	32411543	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5992.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.21	1.51	0.57	0.8	4.09	0.94	4.98	4.18	1.57	1.0	1.0	1.57
Merged-chr1-34859720-2	chr1	34859612	34859812	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	9723.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.81	1.26	0.0	2.01	6.55	2.51	5.98	5.3	6.1	11.55	13.06	6.27
Merged-chr7-79729384-2	chr7	79729301	79729501	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	3375.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	7.27	5.79	3.42	4.02	9.41	5.33	4.32	5.3	9.05	12.05	9.04	7.21
Merged-chr13-9116782-1	chr13	9116682	9116882	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	22901.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	2.42	2.26	2.28	3.22	0.82	0.63	5.65	6.08	5.31	4.02	5.02	1.88
Merged-chr4-57904479-1	chr4	57904379	57904579	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11785.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	1.62	3.02	1.14	10.46	6.55	5.33	3.65	5.19	3.74	7.03	4.02	5.01
Merged-chr4-129056905-1	chr4	129056805	129057005	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1366.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	1.21	1.01	1.14	1.61	1.23	7.84	1.66	4.93	11.8	3.01	2.51	0.94
Merged-chr3-17834922-1	chr3	17834822	17835022	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39260.0	NR_029814	723950.0		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	3.23	2.52	0.0	0.0	4.09	2.51	5.31	3.2	1.97	2.51	3.01	4.07
Merged-chr7-96883150-1	chr7	96883050	96883250	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-68377.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.63	7.04	0.0	0.4	2.05	6.59	3.32	4.99	1.18	1.51	1.51	0.63
Merged-chr5-137194593-1	chr5	137194493	137194693	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78386.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	8.08	7.29	0.57	7.24	1.64	4.7	5.98	6.14	3.93	5.52	6.03	4.7
Merged-chr5-96532102-2	chr5	96531979	96532179	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175473, intron 3 of 73)	L2a|LINE|L2	158124.0	NM_175473	231470.0	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.81	2.52	1.71	1.61	0.82	2.2	3.99	5.21	4.72	3.51	0.5	5.33
Merged-chr19-7303505-1	chr19	7303405	7303605	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-8058.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	2.83	6.79	10.27	4.83	6.55	0.0	1.33	3.14	2.56	3.01	2.51	0.94
Merged-chr17-35918614-1	chr17	35918514	35918714	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-658.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	6.46	4.02	1.14	6.44	3.27	1.57	3.65	5.55	4.13	4.02	3.52	7.83
Merged-chr2-122151307-1	chr2	122151207	122151407	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 2 of 3)	intron (NM_009735, intron 2 of 3)	3620.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.63	8.55	0.0	8.85	9.82	5.33	3.32	3.45	9.83	5.02	9.04	2.82
Merged-chr2-144173976-1	chr2	144173876	144174076	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_136884, exon 4 of 4)	non-coding (NR_136884, exon 4 of 4)	15314.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	1.62	2.01	2.28	2.82	2.86	5.02	3.32	5.78	2.75	2.01	8.54	5.01
Merged-chr4-94739515-1	chr4	94739415	94739615	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290549, exon 1 of 23)	5' UTR (NM_001290549, exon 1 of 23)	226.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	0.81	3.52	2.28	0.8	2.86	0.0	5.98	5.69	0.98	1.0	0.0	0.63
Merged-chrX-162715826-1	chrX	162715726	162715926	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	ID4|SINE|ID	20787.0	NR_153331	102640117.0	Mm.183845	NR_153331	ENSMUSG00000086034	Gm15201	-	predicted gene 15201	ncRNA	5.65	1.51	0.57	2.41	5.32	5.64	4.65	5.61	0.79	0.5	3.52	1.88
Merged-chr3-116124046-1	chr3	116123946	116124146	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	5642.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.23	3.02	2.28	0.0	2.86	7.53	1.99	4.37	4.33	2.01	3.01	1.25
Merged-chr11-121234054-1	chr11	121233954	121234154	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3182.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	4.85	3.02	6.85	1.61	3.68	7.53	2.66	4.18	9.05	7.03	8.04	5.01
Merged-chr13-37482262-1	chr13	37482162	37482362	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	136917.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.23	4.28	7.99	12.47	4.91	5.96	3.32	4.26	4.52	4.02	1.0	1.88
Merged-chr16-75343375-1	chr16	75343275	75343475	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	242686.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	6.86	3.02	1.71	4.42	1.64	5.96	4.65	5.1	2.56	4.02	4.02	5.64
Merged-chr13-74564537-1	chr13	74564437	74564637	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70587.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	2.83	3.77	15.97	2.41	6.14	8.78	5.98	0.95	4.13	10.54	13.57	8.46
Merged-chr14-103375763-1	chr14	103375663	103375863	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-28963.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.81	2.52	10.84	4.42	7.36	4.7	4.65	8.92	6.49	1.0	11.56	3.76
Merged-chr3-40848147-1	chr3	40848047	40848247	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038067, intron 1 of 5)	intron (NR_038067, intron 1 of 5)	1148.0	NR_038067	100039027.0	Mm.482948	NR_038067		Gm2011	-	predicted gene 2011	pseudo	0.81	2.26	2.28	2.01	5.73	1.25	6.64	4.57	4.13	3.51	3.52	3.76
Merged-chr5-33336036-1	chr5	33335936	33336136	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021500, intron 1 of 8)	CpG	464.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	6.46	9.56	9.13	3.22	7.77	3.45	5.65	6.22	11.41	10.04	4.52	6.27
Merged-chr3-116751396-1	chr3	116751296	116751496	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081326, intron 30 of 33)	B3|SINE|B2	-39116.0	NM_001362374	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	2.83	1.51	6.85	4.02	6.55	3.76	1.33	6.08	5.7	1.51	7.03	6.58
Merged-chr5-143033108-1	chr5	143033008	143033208	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	72753.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.65	6.29	4.56	4.02	3.68	5.02	8.3	3.45	7.47	1.51	3.01	5.33
Merged-chr14-31462437-2	chr14	31462360	31462560	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-26360.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.83	10.31	4.56	4.02	7.36	13.17	8.3	1.54	11.01	5.52	2.01	8.46
Merged-chr11-115047927-1	chr11	115047827	115048027	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199201, intron 1 of 3).2	ID_B1|SINE|B4	368.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.81	4.78	0.0	6.44	4.91	4.39	6.98	4.82	2.75	0.5	3.01	3.76
Merged-chr11-61518133-2	chr11	61518031	61518231	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010148, exon 10 of 10)	3' UTR (NM_010148, exon 10 of 10)	12987.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	4.04	7.55	10.27	9.25	5.73	1.88	5.98	5.61	4.72	8.54	4.02	7.52
Merged-chr9-44800138-1	chr9	44800038	44800238	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-891.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	9.69	0.5	9.13	12.87	3.27	6.59	3.65	5.07	5.31	3.01	8.54	4.7
Merged-chr18-65921942-1	chr18	65921842	65922042	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	17147.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	1.62	6.79	3.42	5.63	0.0	6.27	4.65	4.91	7.87	4.52	7.54	2.82
Merged-chr4-133178500-1	chr4	133178400	133178600	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-17155.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	3.23	1.01	7.99	3.22	7.36	3.14	1.99	6.79	3.54	0.0	8.54	6.27
Merged-chr7-143024502-3	chr7	143024389	143024589	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110354, intron 4 of 4)	Lx7|LINE|L1	18830.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	10.5	7.8	13.12	4.42	4.09	4.7	4.32	9.22	9.64	15.06	13.06	3.13
Merged-chr2-105417865-1	chr2	105417765	105417965	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18546.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	2.83	3.27	0.57	3.62	3.27	6.27	2.66	5.24	1.97	3.51	4.52	3.45
Merged-chr6-65150914-1	chr6	65150814	65151014	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6184.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	2.02	6.54	4.56	8.85	5.73	5.33	4.32	5.19	8.06	5.52	9.04	4.39
Merged-chr5-115731473-1	chr5	115731373	115731573	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080808, exon 1 of 9)	exon (NM_001080808, exon 1 of 9)	148.0	NM_001080808	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	6.86	4.28	0.57	3.62	3.68	2.2	4.32	6.59	4.52	2.01	4.02	5.01
Merged-chr5-146844452-1	chr5	146844352	146844552	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	-619.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	3.23	2.52	0.0	1.21	2.45	1.25	8.64	5.86	5.11	4.52	5.53	1.88
Merged-chr5-141058159-1	chr5	141058059	141058259	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57563.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.02	1.26	6.85	0.8	6.55	3.14	4.98	4.54	5.7	3.51	4.52	3.13
Merged-chr4-95871374-1	chr4	95871274	95871474	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	95661.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	2.83	7.29	6.85	8.04	6.95	4.39	3.99	4.54	12.59	10.04	4.52	6.89
Merged-chr1-180407258-1	chr1	180407158	180407358	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	76246.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.63	5.28	3.99	3.22	5.73	10.03	3.32	3.87	10.03	8.54	9.55	3.13
Merged-chr16-97543395-1	chr16	97543295	97543495	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	7312.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	1.21	4.28	0.0	5.63	7.36	8.78	2.99	4.49	5.7	7.03	2.01	2.51
Merged-chr2-167686873-1	chr2	167686773	167686973	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2042.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	4.04	6.54	0.0	5.63	2.86	2.2	3.99	1.91	1.77	2.51	3.01	4.7
Merged-chr6-85037858-1	chr6	85037758	85037958	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	31655.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	10.5	4.78	3.42	1.61	6.14	10.66	4.98	5.02	5.11	5.52	3.52	5.95
Merged-chr12-71012267-2	chr12	71012158	71012358	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045056, intron 2 of 2)	B4A|SINE|B4	3565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	3.63	5.79	5.7	13.27	5.73	4.08	6.31	12.84	8.26	1.0	11.05	4.7
Merged-chr12-100111109-1	chr12	100111009	100111209	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1222.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.42	5.03	2.28	0.8	5.32	3.76	1.99	4.74	7.47	2.51	4.02	3.76
Merged-chrX-52991034-1	chrX	52990934	52991134	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013556, intron 1 of 8)	intron (NM_013556, intron 1 of 8)	2956.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	3.23	3.77	0.0	2.01	4.91	7.21	3.32	4.79	1.57	1.0	3.52	0.94
Merged-chr7-44851136-2	chr7	44851032	44851232	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	1125.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	4.04	5.28	5.7	2.82	15.14	6.59	3.99	4.43	8.06	14.56	10.55	6.27
Merged-chr13-90886860-3	chr13	90886759	90886959	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145879, intron 5 of 6)	intron (NM_001145879, intron 5 of 6)	18496.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	8.48	8.05	2.28	12.47	6.14	6.9	6.31	5.64	12.0	7.03	9.04	9.71
Merged-chr13-24862766-1	chr13	24862666	24862866	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081051, intron 5 of 20)	intron (NM_001081051, intron 5 of 20)	17635.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	2.02	2.01	3.42	4.02	2.45	4.7	2.66	4.15	5.7	6.53	10.55	4.39
Merged-chr15-5108600-1	chr15	5108500	5108700	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001163138)	promoter-TSS (NM_001163138)	-67.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	8.08	9.31	3.42	3.22	3.68	5.33	2.99	2.58	2.16	3.51	2.01	3.13
Merged-chr14-25785369-1	chr14	25785269	25785469	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16513.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	1.21	2.52	2.28	4.42	6.14	4.7	5.98	4.54	5.51	1.0	5.02	1.25
Merged-chr7-127011199-1	chr7	127011099	127011299	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	3395.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	8.88	6.54	2.85	7.24	6.14	7.84	1.0	3.53	8.26	10.54	4.02	11.9
Merged-chr2-160383084-2	chr2	160382993	160383193	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16028.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	7.27	7.29	14.83	0.4	1.64	4.39	1.33	7.96	8.26	5.02	8.04	3.13
Merged-chr8-71284430-1	chr8	71284330	71284530	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	11716.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.86	5.03	0.0	0.8	3.68	7.84	1.0	5.86	9.44	23.1	3.01	1.88
Merged-chr14-40923566-1	chr14	40923466	40923666	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	24643.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	2.42	2.52	1.14	4.02	4.09	0.63	4.98	4.09	0.59	1.51	2.01	2.51
Merged-chr11-5444439-1	chr11	5444339	5444539	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080924, exon 1 of 9)	exon (NM_001080924, exon 1 of 9)	408.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	2.83	4.02	10.27	8.45	18.0	4.7	4.65	7.4	9.64	15.57	4.02	5.01
Merged-chr15-31632720-1	chr15	31632620	31632820	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	30604.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	2.02	1.26	1.71	2.01	3.27	2.82	9.63	4.99	0.98	2.01	5.02	0.0
Merged-chr1-152601570-1	chr1	152601470	152601670	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23647.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.83	2.77	7.99	8.85	2.45	2.82	4.32	5.72	2.16	0.5	2.01	1.57
Merged-chr3-88483855-2	chr3	88483771	88483971	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019390, exon 9 of 10)	exon (NM_019390, exon 9 of 10)	9441.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	6.06	4.02	6.85	7.24	4.5	7.21	3.65	1.77	8.26	6.53	4.52	4.7
Merged-chr3-79126802-1	chr3	79126702	79126902	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	18085.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.42	2.01	0.0	1.21	0.0	0.63	0.0	0.93	11.6	9.54	5.53	5.95
Merged-chr18-23750278-1	chr18	23750178	23750378	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_126066)	TTS (NR_126066)	2027.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	10.09	5.03	3.42	1.61	7.36	6.9	6.31	4.99	5.31	5.52	7.03	5.64
Merged-chr1-155863178-1	chr1	155863078	155863278	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039184, exon 34 of 38)	exon (NM_001039184, exon 34 of 38)	-50279.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	3.23	0.5	3.42	6.44	0.41	1.25	1.33	3.87	9.24	4.52	9.55	8.46
Merged-chr2-128371028-1	chr2	128370928	128371128	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	58323.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	4.04	1.76	9.13	2.01	7.36	9.41	4.65	3.9	6.1	6.03	8.54	6.27
Merged-chr19-43909512-1	chr19	43909412	43909612	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028029, intron 3 of 15)	intron (NM_028029, intron 3 of 15)	-29744.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	8.08	6.79	2.28	1.61	0.82	2.51	2.33	4.09	0.98	0.0	1.0	0.63
Merged-chr4-123575857-1	chr4	123575757	123575957	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-40563.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	5.65	8.3	8.56	2.82	1.64	5.33	2.33	9.06	9.24	8.03	8.54	4.39
Merged-chr10-7883666-1	chr10	7883566	7883766	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47285.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	4.44	2.01	2.28	4.02	6.95	4.7	3.32	6.06	2.75	5.52	14.07	2.19
Merged-chr3-107680843-1	chr3	107680743	107680943	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15213.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	2.02	2.26	5.7	4.83	5.32	2.2	5.65	5.41	4.13	4.02	3.52	2.51
Merged-chr2-59181999-1	chr2	59181899	59182099	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	21149.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	3.52	3.42	0.8	3.27	7.21	1.33	4.26	3.93	0.5	5.53	8.14
Merged-chr6-94060112-1	chr6	94060012	94060212	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-146422.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.81	0.0	0.0	0.8	0.82	5.33	2.99	7.54	1.18	3.01	0.0	0.31
Merged-chr6-22398254-1	chr6	22398154	22398354	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42173.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.46	5.03	2.28	7.24	4.5	4.39	4.32	4.49	8.65	5.02	9.04	8.14
Merged-chr16-11676850-1	chr16	11676750	11676950	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-102852.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	2.02	3.02	5.13	4.02	4.5	1.88	1.33	2.41	6.29	7.53	4.02	4.39
Merged-chr9-99119943-1	chr9	99119843	99120043	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	20268.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.42	1.76	9.13	6.44	0.82	2.51	7.64	11.13	3.74	5.52	6.03	4.07
Merged-chr6-124857612-1	chr6	124857512	124857712	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	75.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	4.85	6.54	0.0	5.63	5.73	6.59	2.99	7.21	5.31	4.52	7.03	4.39
Merged-chr17-17881465-2	chr17	17881374	17881574	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	2465.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	4.85	3.52	1.14	4.83	4.09	4.7	3.32	5.3	5.51	9.54	12.06	10.34
Merged-chr7-80823973-2	chr7	80823878	80824078	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20647.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.06	2.52	6.28	6.44	9.0	9.09	3.65	4.32	11.01	9.54	12.06	4.39
Merged-chr15-3213937-1	chr15	3213837	3214037	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56830.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	2.42	4.28	6.28	4.02	13.09	9.72	7.31	6.06	5.9	7.03	10.55	8.46
Merged-chr6-57767314-1	chr6	57767214	57767414	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	57811.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.85	4.28	5.13	2.01	7.36	8.47	3.65	4.35	4.92	4.02	7.03	7.52
Merged-chr9-120578914-1	chr9	120578814	120579014	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_073359)	TTS (NR_073359)	1583.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	12.92	1.51	4.56	4.02	6.95	4.39	2.99	5.05	3.74	5.02	4.52	3.76
Merged-chr7-127761210-2	chr7	127761128	127761328	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-8587.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	4.85	6.04	4.56	6.44	5.32	5.64	3.99	1.79	10.03	13.05	15.07	2.51
Merged-chr10-93641189-4	chr10	93641119	93641319	+	618.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021320, exon 1 of 10)	5' UTR (NM_021320, exon 1 of 10)	170.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	7.27	5.53	11.41	3.62	1.64	6.27	1.99	4.57	6.69	7.03	8.04	2.19
Merged-chr5-108447926-2	chr5	108447811	108448011	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1189.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	4.04	6.29	7.99	0.8	11.45	19.13	4.65	6.81	7.87	8.03	10.05	4.07
Merged-chr4-87759271-2	chr4	87759171	87759371	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47052.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.65	3.27	5.7	4.83	2.05	4.7	6.31	7.43	6.49	4.52	9.55	6.89
Merged-chr13-33995435-2	chr13	33995330	33995530	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-6933.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	6.06	3.77	2.28	8.45	8.18	6.27	1.99	5.5	16.92	2.01	11.56	3.76
Merged-chr1-43520788-2	chr1	43520693	43520893	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75042.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.23	4.28	4.56	8.04	2.86	5.96	6.64	10.96	4.13	10.04	12.06	9.4
Merged-chr10-34132129-2	chr10	34131971	34132171	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4099.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	2.42	3.27	3.42	0.0	6.14	4.7	2.66	3.36	7.08	3.01	2.51	4.7
Merged-chr12-40478165-2	chr12	40478062	40478262	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	32109.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.25	3.52	6.85	6.03	7.77	5.64	3.99	5.89	11.21	6.53	7.03	12.22
Merged-chr13-60691803-1	chr13	60691703	60691903	+	618.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	ORR1D2|LTR|ERVL-MaLR	89592.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	3.27	1.14	1.61	9.41	5.64	5.31	4.54	5.7	0.0	4.02	0.94
Merged-chr11-5109943-3	chr11	5109841	5110041	+	618.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9776.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	5.65	6.04	10.84	14.48	6.55	4.7	2.99	9.95	7.67	10.04	12.06	2.19
Merged-chr12-108657550-1	chr12	108657450	108657650	+	618.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	-1070.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	10.09	5.03	1.14	6.44	8.59	10.03	0.66	5.64	5.7	8.54	4.52	2.82
Merged-chr4-111442543-1	chr4	111442443	111442643	+	618.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_033793, intron 3 of 5)	intron (NR_033793, intron 3 of 5)	27537.0	NM_026279	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	9.69	6.54	2.28	9.25	2.45	0.0	1.33	4.4	0.98	0.5	0.0	3.76
Merged-chr11-70656524-1	chr11	70656424	70656624	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-652.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	5.65	2.26	4.56	3.22	5.32	7.84	8.64	5.61	8.26	9.54	3.52	6.89
Merged-chr2-126674076-1	chr2	126673976	126674176	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271470, intron 1 of 8)	Charlie1b|DNA|hAT-Charlie	1276.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	2.02	4.53	2.85	0.4	1.64	5.96	7.31	4.15	7.87	2.51	5.53	10.34
Merged-chr6-31215222-1	chr6	31215122	31215322	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	3252.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	1.21	3.77	3.42	2.82	3.68	5.64	3.65	3.0	1.38	4.02	3.01	6.27
Merged-chr15-59017652-1	chr15	59017552	59017752	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	MLT1A0|LTR|ERVL-MaLR	64374.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	1.62	1.51	2.85	4.02	9.82	5.02	1.99	7.93	1.38	2.01	1.0	1.57
Merged-chr2-166977722-3	chr2	166977622	166977822	+	618.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-13005.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	7.67	8.55	7.99	1.21	3.68	9.41	5.31	5.3	10.03	6.03	5.02	6.27
Merged-chr17-64332925-1	chr17	64332825	64333025	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1042.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	2.42	6.79	5.7	2.01	8.59	5.64	3.99	4.96	5.51	4.02	7.03	5.01
Merged-chr11-69546539-2	chr11	69546398	69546598	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2610.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	4.85	8.05	0.57	1.21	6.95	2.51	1.0	6.84	5.51	10.04	5.53	5.33
Merged-chr11-29655349-1	chr11	29655249	29655449	+	618.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-37549.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.81	0.0	0.57	0.0	3.27	12.23	6.98	0.84	8.46	10.04	15.58	1.88
Merged-chr5-90703069-1	chr5	90702969	90703169	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56229.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.81	1.76	2.28	0.8	5.32	9.09	9.97	1.07	8.85	8.03	9.55	2.82
Merged-chr5-5610532-1	chr5	5610432	5610632	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172447, intron 13 of 22)	intron (NM_172447, intron 13 of 22)	36733.0	NR_033499	667705.0	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	0.81	5.53	3.42	2.82	1.23	5.64	3.65	6.87	0.0	1.0	1.0	2.19
Merged-chr13-20898850-1	chr13	20898750	20898950	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	104737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	2.83	1.76	6.28	0.8	1.64	6.59	4.65	3.9	2.56	1.0	4.52	1.25
Merged-chr7-83653389-1	chr7	83653289	83653489	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	2106.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.25	3.77	3.42	3.62	7.77	6.59	2.33	5.47	6.69	3.01	1.51	3.45
Merged-chr10-44146898-1	chr10	44146798	44146998	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23549.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	3.23	1.51	6.85	5.63	6.95	2.51	3.32	5.8	3.93	3.51	7.54	2.51
Merged-chr9-63782853-2	chr9	63782762	63782962	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24868.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.85	4.02	7.42	3.22	5.32	3.76	3.65	5.3	12.39	4.52	10.55	8.46
Merged-chr6-142988958-2	chr6	142988865	142989065	+	618.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24513.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	6.06	5.03	8.56	6.44	13.5	6.9	8.64	5.58	5.51	11.55	7.03	7.52
Merged-chr7-80554952-1	chr7	80554852	80555052	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19833.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	4.04	7.04	2.28	2.41	6.14	5.96	5.98	5.16	7.08	2.01	6.53	8.14
Merged-chr11-109269853-1	chr11	109269753	109269953	+	618.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28328.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.02	5.28	1.14	3.22	1.23	3.14	2.66	1.6	10.62	5.02	11.05	8.77
Merged-chr11-113444458-1	chr11	113444358	113444558	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	121357.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	1.14	3.22	4.09	5.64	4.98	8.58	0.0	0.0	1.51	0.0
Merged-chr5-117377963-1	chr5	117377863	117378063	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021539, exon 9 of 9)	3' UTR (NM_021539, exon 9 of 9)	11060.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.85	13.08	5.7	5.23	6.95	7.21	3.65	7.43	10.03	3.51	1.51	1.25
Merged-chr13-103334518-1	chr13	103334418	103334618	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	-26.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	1.21	1.51	4.56	1.61	5.73	4.39	5.31	9.81	5.11	5.52	1.51	0.0
Merged-chr5-121122615-1	chr5	121122515	121122715	+	618.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	68782.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	4.04	3.02	7.99	0.4	0.0	3.14	0.0	2.92	5.9	6.03	7.54	4.7
Merged-chr11-110371994-2	chr11	110371898	110372098	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27104.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.4	5.28	1.14	4.02	4.91	5.64	1.33	5.19	13.96	18.08	9.04	3.13
Merged-chr14-104434490-2	chr14	104434383	104434583	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33516.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.42	2.01	1.14	7.24	2.86	5.64	6.98	4.88	7.08	3.01	12.56	4.07
Merged-chr11-109365493-2	chr11	109365411	109365611	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1857.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	5.25	4.78	3.99	1.21	4.09	8.15	4.65	4.4	9.64	14.06	8.54	2.19
Merged-chr2-150755252-2	chr2	150755154	150755354	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355068, intron 2 of 13)	intron (NM_001355068, intron 2 of 13)	6173.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	4.04	6.54	6.85	11.26	2.45	5.02	1.33	4.4	7.08	12.55	8.54	8.46
Merged-chr9-121877269-2	chr9	121877172	121877372	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19476.0	NM_001357840	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	3.23	4.28	2.85	3.22	5.32	5.02	1.99	3.79	8.85	13.05	8.04	6.58
Merged-chr7-113134046-2	chr7	113133956	113134156	+	618.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045978, intron 2 of 5)	intron (NR_045978, intron 2 of 5)	7959.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	5.65	10.82	9.7	9.25	5.32	8.47	6.98	4.15	3.54	4.52	10.55	0.31
Merged-chr14-121991496-1	chr14	121991396	121991596	+	618.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-26303.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	3.63	0.5	0.0	0.0	0.82	1.88	2.99	0.84	11.21	19.08	11.56	7.52
Merged-chr4-16162274-2	chr4	16162181	16162381	+	618.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	1362.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.23	5.03	9.7	4.02	4.09	6.27	2.99	5.89	10.03	12.05	10.55	6.27
Merged-chr6-108773141-3	chr6	108773095	108773295	+	618.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9864.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	6.06	7.55	9.13	4.83	4.91	6.59	3.65	3.39	10.82	6.53	7.54	4.7
Merged-chr6-146641986-2	chr6	146641886	146642086	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-593.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	4.44	11.32	6.28	3.22	8.59	7.53	1.99	5.55	11.01	9.04	8.54	10.02
Merged-chr3-97228801-2	chr3	97228681	97228881	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	2.42	4.53	5.7	2.82	1.64	5.02	7.64	6.34	6.49	3.51	14.57	8.46
Merged-chr11-107044495-1	chr11	107044395	107044595	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359590, intron 24 of 27)	intron (NM_001359590, intron 24 of 27)	16272.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	4.44	3.77	5.13	4.02	4.09	6.27	1.66	8.3	3.93	12.55	6.53	5.01
Merged-chr17-64232649-1	chr17	64232549	64232749	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	99234.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	3.63	3.02	7.42	4.42	4.5	4.08	5.65	4.65	4.52	1.51	8.54	4.07
Merged-chr14-67920114-1	chr14	67920014	67920214	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	13458.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	5.65	1.76	8.56	3.62	9.0	7.84	3.32	4.51	7.08	3.51	6.03	3.76
Merged-chr9-90197151-1	chr9	90197051	90197251	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001326294, exon 22 of 23)	exon (NM_001326294, exon 22 of 23)	34173.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	5.65	12.07	7.99	4.42	1.23	5.64	0.66	1.29	2.75	5.52	5.53	1.88
Merged-chr13-95884207-1	chr13	95884107	95884307	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	ORR1D2|LTR|ERVL-MaLR	7715.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.4	1.01	2.85	0.8	1.64	4.08	4.65	7.35	1.18	0.0	2.51	2.82
Merged-chr15-99818737-1	chr15	99818637	99818837	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1412.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.85	2.26	1.71	4.02	0.0	3.45	3.65	2.13	5.9	2.01	5.53	7.52
Merged-chr16-49796498-1	chr16	49796398	49796598	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59156.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.48	2.26	3.42	3.22	2.05	4.39	4.65	6.39	1.18	3.01	3.52	2.51
Merged-chr10-20724507-2	chr10	20724406	20724606	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	572.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	1.21	3.52	9.13	7.24	6.55	11.6	1.66	4.12	9.64	10.04	7.03	10.96
Merged-chr11-89020090-1	chr11	89019990	89020190	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20687.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.44	2.01	0.57	2.01	2.86	6.9	4.65	5.89	2.95	3.51	7.54	5.01
Merged-chr17-23790648-1	chr17	23790548	23790748	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4432.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	4.04	3.27	3.42	0.4	5.73	7.53	2.66	2.78	8.06	7.53	10.55	10.02
Merged-chr17-5047582-1	chr17	5047482	5047682	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	52508.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.63	8.05	6.28	12.47	4.5	0.63	1.0	2.78	9.44	1.0	5.53	1.88
Merged-chr15-38666645-1	chr15	38666545	38666745	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	4741.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.85	2.52	12.55	3.62	2.45	4.7	1.66	7.77	5.11	2.01	4.52	6.58
Merged-chr13-59818023-1	chr13	59817923	59818123	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	5124.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	6.86	5.03	10.27	5.63	7.36	7.21	1.99	6.62	6.69	7.03	6.03	2.82
Merged-chr1-149917266-1	chr1	149917166	149917366	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	5173.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	1.21	3.02	1.14	2.41	0.82	1.88	4.98	7.37	2.36	0.0	8.04	1.25
Merged-chr9-111096615-1	chr9	111096515	111096715	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21496.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	8.48	2.77	1.14	3.22	6.14	5.96	2.66	10.82	5.31	4.52	2.01	2.51
Merged-chr16-26065265-1	chr16	26065165	26065365	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	40519.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	2.52	4.56	10.86	6.55	1.25	1.33	7.21	4.92	1.0	4.02	3.13
Merged-chr19-37544186-2	chr19	37544071	37544271	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6247.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.46	5.53	3.42	1.61	3.27	8.47	1.66	4.46	9.24	3.01	1.51	5.01
Merged-chr4-86579679-1	chr4	86579579	86579779	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4006.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	2.42	5.03	3.99	0.8	0.0	5.33	1.99	4.15	1.97	4.02	4.02	1.25
Merged-chr7-143584128-1	chr7	143584028	143584228	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252593, intron 6 of 21)	intron (NM_001252593, intron 6 of 21)	-13369.0	NR_106031	102465644.0		NR_106031	ENSMUSG00000098593	Mir7064	Gm27632|mmu-mir-7064	microRNA 7064	ncRNA	3.63	2.77	3.99	4.83	10.64	10.35	5.65	2.8	5.9	4.52	6.53	8.46
Merged-chr8-126481780-1	chr8	126481680	126481880	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6715.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	8.08	4.02	3.42	2.82	3.27	0.31	2.33	4.88	3.15	4.02	2.51	3.76
Merged-chr1-39603554-1	chr1	39603454	39603654	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-26207.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	2.83	3.02	6.85	8.85	3.27	7.84	1.99	4.88	4.52	4.02	7.03	3.76
Merged-chr13-33957007-1	chr13	33956907	33957107	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040707, intron 3 of 4)	intron (NR_040707, intron 3 of 4)	-7652.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	2.42	2.52	5.13	0.4	4.91	4.08	2.66	6.0	6.49	4.52	8.04	3.76
Merged-chr3-127971033-1	chr3	127970933	127971133	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54862.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	4.44	5.28	0.0	2.41	1.64	7.21	3.32	5.13	0.39	1.51	0.5	2.82
Merged-chr2-69670709-1	chr2	69670609	69670809	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081087, exon 1 of 6)	exon (NM_001081087, exon 1 of 6)	589.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	5.25	3.02	2.85	6.44	2.86	5.33	4.32	7.82	5.51	6.03	6.53	7.21
Merged-chr6-37605077-1	chr6	37604977	37605177	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74904.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	5.25	5.53	2.28	4.83	5.32	1.88	3.99	7.51	7.08	10.04	7.03	4.39
Merged-chr1-155093640-1	chr1	155093540	155093740	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5996.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	4.85	7.04	5.13	8.04	3.68	7.84	1.99	3.48	4.92	4.02	3.52	4.7
Merged-chr16-49797076-1	chr16	49796976	49797176	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-58578.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.81	3.02	1.14	0.0	7.36	6.27	3.99	2.64	6.88	3.01	7.03	0.31
Merged-chr4-59381160-1	chr4	59381060	59381260	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	57473.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.44	2.77	4.56	4.83	4.91	5.02	2.99	6.34	2.56	0.5	0.0	3.13
Merged-chr7-66232822-1	chr7	66232722	66232922	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123307.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	2.02	4.78	6.28	6.44	3.27	1.25	4.98	4.68	4.33	2.51	8.54	2.51
Merged-chr2-153424790-1	chr2	153424690	153424890	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001986, intron 2 of 7)	intron (NM_001001986, intron 2 of 7)	19689.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	2.42	1.01	1.71	0.4	1.64	5.64	0.0	4.32	2.95	4.52	1.51	4.7
Merged-chr14-9395764-1	chr14	9395664	9395864	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-488331.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.42	0.0	0.0	2.41	6.14	0.31	6.31	7.07	1.18	0.0	1.0	0.63
Merged-chr17-53578466-1	chr17	53578366	53578566	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	RSINE1|SINE|B4	-5660.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.81	2.01	1.14	2.01	6.55	2.2	7.97	4.46	6.49	3.51	8.04	5.95
Merged-chr10-75589970-1	chr10	75589870	75590070	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	589.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	4.04	8.3	2.28	7.24	3.68	5.02	1.99	5.36	5.51	5.02	8.54	6.27
Merged-chr15-73687689-1	chr15	73687589	73687789	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19816.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	8.48	3.02	3.42	2.41	2.86	4.08	5.65	5.1	4.92	1.51	1.0	2.51
Merged-chr13-101685104-1	chr13	101685004	101685204	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024955, intron 9 of 9)	intron (NM_001024955, intron 9 of 9)	7526.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.42	0.5	3.42	0.0	1.64	2.82	3.99	4.35	1.97	9.04	5.53	10.34
Merged-chr8-88667982-3	chr8	88667885	88668085	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20638.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	9.69	7.8	3.42	5.23	6.14	4.7	4.32	7.07	9.64	9.54	4.02	13.78
Merged-chr14-51907335-1	chr14	51907235	51907435	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360266, intron 11 of 15)	intron (NM_001360266, intron 11 of 15)	4654.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	2.02	2.77	2.28	2.82	0.41	2.82	2.66	1.74	5.31	6.03	14.07	6.89
Merged-chr5-125314119-1	chr5	125314019	125314219	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	26975.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.44	4.53	4.56	4.42	4.09	5.64	3.32	6.28	6.49	5.02	7.03	7.52
Merged-chr7-99956351-1	chr7	99956251	99956451	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	24107.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	1.21	1.51	0.0	1.61	7.36	1.88	3.65	6.81	5.51	3.51	3.52	4.07
Merged-chr5-149471427-1	chr5	149471327	149471527	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310763)	TTS (NM_001310763)	31767.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	2.42	6.54	6.28	3.22	0.0	0.0	2.66	0.48	9.05	0.5	5.02	6.58
Merged-chr13-52071382-3	chr13	52071283	52071483	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25358.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.86	6.04	4.56	1.21	11.86	9.72	2.33	5.24	10.03	10.54	5.53	6.58
Merged-chr3-89243696-1	chr3	89243596	89243796	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_183037, exon 3 of 10)	exon (NM_183037, exon 3 of 10)	1317.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	3.23	8.3	10.27	4.02	0.41	0.0	1.33	0.45	1.77	2.01	1.51	2.19
Merged-chr6-53854648-2	chr6	53854532	53854732	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-33807.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	2.02	7.8	10.27	8.45	7.77	3.76	0.66	5.97	6.69	3.51	4.52	4.7
Merged-chr3-109340985-1	chr3	109340885	109341085	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_020505, exon 1 of 27)	5' UTR (NM_020505, exon 1 of 27)	302.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.29	7.29	10.27	6.44	6.95	7.84	7.64	5.3	8.06	9.54	6.03	8.14
Merged-chr15-41595194-1	chr15	41595094	41595294	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	146091.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	1.62	2.01	4.56	2.41	3.27	4.7	2.99	9.79	3.15	1.0	7.03	2.19
Merged-chr2-5768478-2	chr2	5768390	5768590	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53728.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.04	3.77	8.56	4.02	6.14	1.88	5.31	7.43	5.51	2.01	9.55	3.76
Merged-chr6-5038185-2	chr6	5038079	5038279	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	134859.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.83	10.06	0.0	10.05	7.36	5.96	9.97	0.93	7.08	3.51	5.53	6.58
Merged-chr3-88476609-2	chr3	88476501	88476701	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15419.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	5.65	4.53	0.0	4.42	7.77	5.02	2.33	6.22	7.08	13.56	13.06	5.95
Merged-chr7-110786888-1	chr7	110786788	110786988	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14284.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.4	1.01	1.14	2.82	4.91	7.21	1.99	3.73	0.79	4.52	1.0	3.76
Merged-chr7-25269192-1	chr7	25269092	25269292	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	1493.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	4.04	4.53	6.28	3.22	4.09	4.08	4.98	4.35	7.08	6.03	4.52	8.77
Merged-chr16-22537366-1	chr16	22537266	22537466	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-5182.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	3.23	3.27	0.0	2.01	1.23	2.82	5.65	6.98	3.15	5.02	1.51	5.01
Merged-chr1-178360880-2	chr1	178360773	178360973	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-23058.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	6.06	7.8	5.13	5.63	3.27	11.92	7.31	1.96	7.87	3.51	3.01	0.63
Merged-chr1-166793253-1	chr1	166793153	166793353	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111408.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.5	2.28	2.41	6.95	4.08	2.99	7.43	1.77	1.51	4.52	3.45
Merged-chr9-116146576-2	chr9	116146479	116146679	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	28784.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.67	6.54	15.97	8.85	3.27	4.08	6.64	7.54	3.54	1.51	0.0	0.63
Merged-chr11-11559475-1	chr11	11559375	11559575	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68363.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	3.63	3.52	4.56	4.42	2.86	3.14	4.65	6.34	4.52	2.01	5.02	4.39
Merged-chr11-20632857-1	chr11	20632757	20632957	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	880.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	8.08	6.79	6.85	4.83	9.0	6.9	8.97	3.87	12.78	10.54	27.64	10.02
Merged-chr18-52599837-1	chr18	52599737	52599937	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16078.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	1.21	3.02	3.42	0.0	5.73	4.7	2.33	2.05	10.23	7.53	15.58	5.01
Merged-chr11-51816039-2	chr11	51815947	51816147	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41434.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	15.34	5.28	5.13	3.62	9.41	4.39	5.31	3.81	10.03	10.54	11.05	3.76
Merged-chr7-102927308-1	chr7	102927208	102927408	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_147089)	promoter-TSS (NM_147089)	-322.0	NM_147089	259093.0	Mm.377837	NM_147089	ENSMUSG00000073963	Olfr572	MOR10-2	olfactory receptor 572	protein-coding	3.23	2.52	8.56	5.63	0.0	5.96	4.65	6.93	2.56	0.0	2.01	2.82
Merged-chr17-44256761-2	chr17	44256642	44256842	+	617.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	68170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	10.5	3.02	2.28	6.44	5.32	3.45	7.31	5.83	4.92	1.51	3.01	3.76
Merged-chr9-72458438-2	chr9	72458342	72458542	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009359, exon 12 of 12)	3' UTR (NM_009359, exon 12 of 12)	19913.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	3.23	3.02	3.42	2.01	4.5	6.27	1.0	3.93	11.41	5.02	20.1	7.52
Merged-chr3-88150792-1	chr3	88150692	88150892	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	8420.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.46	2.26	3.42	6.44	9.41	7.53	3.65	3.5	2.36	11.05	5.53	1.57
Merged-chr1-180814763-1	chr1	180814663	180814863	+	617.75	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1158.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	7.67	7.04	11.41	6.44	2.45	0.63	0.66	3.17	3.15	3.01	5.53	4.39
Merged-chr1-91179917-1	chr1	91179817	91180017	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	95.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	4.04	3.27	5.7	2.41	6.95	4.39	5.31	5.89	4.33	4.52	4.02	2.51
Merged-chr12-80129716-2	chr12	80129593	80129793	+	617.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	3151.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	10.5	6.79	2.85	7.24	4.09	6.9	1.99	1.63	8.46	10.04	9.04	9.4
Merged-chr8-10923693-1	chr8	10923593	10923793	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_030715)	TTS (NR_030715)	4764.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	4.85	6.04	5.7	3.22	10.64	4.39	9.63	3.98	4.72	2.51	2.51	2.19
Merged-chr19-40662092-3	chr19	40662051	40662251	+	617.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	2381.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.06	6.54	5.7	11.26	4.91	5.96	4.98	4.43	6.88	8.03	5.53	12.22
Merged-chr3-129270211-1	chr3	129270111	129270311	+	617.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007934, exon 20 of 20)	3' UTR (NM_007934, exon 20 of 20)	56279.0	NM_001042502	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.81	2.01	4.56	0.0	8.18	4.39	10.63	6.62	3.34	2.51	6.53	3.13
Merged-chr1-44042360-3	chr1	44042240	44042440	+	617.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22334.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	7.67	7.04	7.99	4.83	10.64	8.78	3.65	4.54	7.08	7.03	7.03	5.95
Merged-chr9-107545790-1	chr9	107545690	107545890	+	617.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018879)	TTS (NM_018879)	-1520.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	4.85	4.53	5.13	8.45	3.27	12.86	0.0	1.35	10.23	14.56	11.56	10.02
Merged-chr17-56473661-2	chr17	56473570	56473770	+	617.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	2810.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.04	3.27	4.56	3.22	10.23	8.47	3.32	3.9	7.47	6.03	8.54	14.41
Merged-chr11-96963779-2	chr11	96963671	96963871	+	617.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	13917.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	5.65	6.29	14.26	3.22	11.86	10.66	2.33	5.5	8.65	12.55	11.56	5.01
Merged-chr8-84782757-2	chr8	84782643	84782843	+	617.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 1 of 9)	(CAAAA)n|Simple_repeat|Simple_repeat	-8374.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	9.29	3.27	7.42	8.45	7.77	10.98	2.99	5.55	0.2	0.5	0.0	0.63
Merged-chr6-83416519-1	chr6	83416419	83416619	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-15417.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	6.06	4.28	5.7	5.23	10.64	5.96	3.99	5.58	2.95	4.52	7.03	5.01
Merged-chr4-87863437-2	chr4	87863338	87863538	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-57115.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	2.42	5.28	2.85	8.04	6.14	1.25	3.32	3.87	9.44	5.02	11.05	9.71
Merged-chr9-32137945-2	chr9	32137828	32138028	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	21792.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.81	4.53	9.13	4.02	5.73	2.82	0.66	5.02	12.78	0.5	11.05	6.89
Merged-chr9-74991381-2	chr9	74991293	74991493	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153584, intron 1 of 11)	Lx10|LINE|L1	15282.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.81	4.28	4.56	2.41	5.73	3.45	3.99	5.44	11.01	6.03	8.54	8.77
Merged-chr2-28466291-1	chr2	28466191	28466391	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027040)	promoter-TSS (NM_027040)	33.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	7.27	3.52	3.42	3.62	7.36	4.08	5.31	6.67	5.9	5.52	7.54	5.01
Merged-chr5-17815499-2	chr5	17815399	17815599	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	20397.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.04	8.05	7.42	10.46	7.36	4.39	6.31	3.95	4.33	9.54	3.01	10.34
Merged-chr16-55964692-2	chr16	55964587	55964787	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1588.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	6.46	9.06	13.12	2.82	4.5	7.53	2.99	5.16	5.11	7.53	15.07	5.01
Merged-chr11-72782741-2	chr11	72782637	72782837	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001024926, exon 3 of 4)	exon (NM_001024926, exon 3 of 4)	13102.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	7.67	2.26	5.13	4.42	1.23	10.35	2.99	4.93	7.08	4.02	4.02	7.52
Merged-chr9-47721226-1	chr9	47721126	47721326	+	617.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96982.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.19	9.04	13.57	0.94
Merged-chr1-170714547-1	chr1	170714447	170714647	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 15 of 15)	L1_Mus2|LINE|L1	70015.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	1.62	1.26	0.0	0.0	9.82	6.59	2.66	5.21	4.33	3.01	4.52	2.51
Merged-chr16-52450728-1	chr16	52450628	52450828	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	2353.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	5.25	2.52	6.85	4.42	8.18	12.23	3.99	4.51	10.03	2.01	4.52	0.63
Merged-chr17-12119957-1	chr17	12119857	12120057	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	673.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.23	0.0	3.42	3.62	11.45	5.02	3.32	4.51	6.88	3.51	7.54	1.57
Merged-chr10-99181170-1	chr10	99181070	99181270	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73035.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	2.83	4.53	4.56	2.41	6.14	6.27	6.64	4.68	2.36	5.02	3.52	5.33
Merged-chr7-127110814-2	chr7	127110727	127110927	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	11202.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	11.71	6.04	4.56	3.22	8.18	4.39	1.33	5.24	5.51	2.51	10.55	4.39
Merged-chr6-90515283-2	chr6	90515170	90515370	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35523.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	10.5	8.55	14.26	6.03	12.27	5.64	8.3	5.78	3.54	12.55	10.05	3.45
Merged-chr7-6152434-1	chr7	6152334	6152534	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3537.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	6.46	1.51	0.0	1.61	2.45	7.53	4.32	4.77	3.34	0.5	3.52	2.19
Merged-chr11-115158168-1	chr11	115158068	115158268	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021411, intron 3 of 8)	intron (NM_021411, intron 3 of 8)	3990.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	4.04	1.51	1.71	4.02	5.73	1.88	4.98	5.07	3.15	1.51	3.01	2.51
Merged-chr8-66497409-2	chr8	66497313	66497513	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10883.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.85	5.53	12.55	3.22	6.14	3.14	2.99	8.24	14.16	11.05	12.06	6.27
Merged-chr2-34913389-1	chr2	34913289	34913489	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028716, intron 1 of 14)	CpG	587.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	7.27	4.28	3.42	3.22	5.73	10.03	5.98	4.4	6.49	6.03	17.08	7.83
Merged-chr3-61268911-1	chr3	61268811	61269011	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95596.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.23	10.31	1.14	1.61	2.86	5.64	5.98	4.88	2.16	4.52	0.0	1.88
Merged-chr4-57954064-1	chr4	57953964	57954164	+	617.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	2347.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	3.23	3.77	4.56	1.61	0.82	3.76	3.32	4.85	6.29	12.05	4.02	7.52
Merged-chr16-10987640-2	chr16	10987547	10987747	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	5474.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	2.02	2.26	16.54	7.24	3.68	6.27	7.97	3.9	4.72	6.03	6.53	4.7
Merged-chr6-17696551-1	chr6	17696451	17696651	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	2557.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	8.48	2.01	7.42	4.42	8.59	4.08	6.64	5.07	6.49	6.53	4.52	4.7
Merged-chr11-55098898-3	chr11	55098785	55098985	+	617.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010299, intron 1 of 3)	intron (NM_010299, intron 1 of 3)	900.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.25	4.02	11.41	11.26	8.59	1.57	0.0	5.3	4.72	6.53	7.03	4.07
Merged-chr17-87561126-2	chr17	87561025	87561225	+	617.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74854.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.44	3.52	3.42	4.83	10.64	4.08	4.65	6.42	13.77	5.02	9.55	4.07
Merged-chr7-123200943-3	chr7	123200849	123201049	+	617.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13917.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	6.86	8.3	7.99	11.66	14.32	5.33	6.98	5.24	6.49	9.04	9.55	2.51
Merged-chr2-27692851-3	chr2	27692743	27692943	+	617.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	15642.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	9.69	5.53	5.7	2.82	7.77	6.27	7.31	5.36	10.82	8.03	9.04	3.76
Merged-chr4-86898932-2	chr4	86898837	86899037	+	617.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24523.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.23	2.26	12.55	4.02	6.55	1.88	4.98	12.81	6.88	3.01	14.57	6.89
Merged-chr7-141060975-2	chr7	141060896	141061096	+	617.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177897)	promoter-TSS (NM_177897)	-278.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	5.65	4.28	2.85	5.63	6.55	10.35	6.31	8.07	7.67	3.51	10.05	7.83
Merged-chr10-111422285-1	chr10	111422185	111422385	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-50942.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	2.02	2.01	1.14	7.24	5.32	2.2	2.66	4.82	1.38	4.52	2.01	1.88
Merged-chr4-133631616-2	chr4	133631498	133631698	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1831.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.23	4.53	7.99	5.23	4.91	8.15	7.31	7.74	7.08	3.51	10.55	8.46
Merged-chrX-101268929-1	chrX	101268829	101269029	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013563)	promoter-TSS (NM_013563)	-674.0	NM_013563	16186.0	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.0	2.77	1.71	1.61	3.27	10.98	1.99	4.79	7.08	4.52	9.04	3.13
Merged-chr16-23195821-1	chr16	23195721	23195921	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155420, intron 2 of 2)	MTE-int|LTR|ERVL-MaLR	20541.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	1.62	2.77	6.85	8.85	6.95	0.63	3.32	5.44	5.51	5.02	4.52	1.88
Merged-chr10-127569635-2	chr10	127569525	127569725	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-35066.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.85	5.79	6.28	6.44	8.59	11.29	6.64	5.78	6.1	8.54	15.58	5.01
Merged-chr4-136889985-1	chr4	136889885	136890085	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007574, exon 3 of 3)	3' UTR (NM_007574, exon 3 of 3)	2929.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	1.62	3.27	1.14	0.8	3.27	4.39	0.66	0.98	8.26	11.05	3.01	2.19
Merged-chr12-80001944-1	chr12	80001844	80002044	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65680.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.23	4.02	0.0	2.01	0.82	5.02	2.33	4.37	0.98	1.51	1.0	3.13
Merged-chr5-118358677-1	chr5	118358577	118358777	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	113450.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	3.63	3.52	3.99	2.82	3.27	1.57	3.32	3.53	1.18	1.51	0.5	1.25
Merged-chr8-70014495-1	chr8	70014395	70014595	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-18111.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	0.25	1.71	0.8	5.32	5.96	1.99	4.46	1.57	6.53	3.01	3.45
Merged-chr12-65111708-1	chr12	65111608	65111808	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178912, intron 14 of 22)	RLTR18|LTR|ERVK	36102.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	4.04	3.02	0.0	6.84	4.5	5.33	3.99	6.2	4.33	0.0	1.0	3.76
Merged-chr5-14515084-1	chr5	14514984	14515184	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011995, exon 1 of 25)	5' UTR (NM_011995, exon 1 of 25)	166.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.81	2.01	0.0	0.0	0.82	7.84	1.33	0.03	1.38	5.52	3.52	3.76
Merged-chr5-20674699-1	chr5	20674599	20674799	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	207425.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	1.62	3.27	3.42	8.85	6.14	5.02	1.0	6.98	0.98	0.5	5.02	0.63
Merged-chr2-84888850-1	chr2	84888750	84888950	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2158.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	3.23	3.27	6.85	4.42	2.45	5.02	6.64	4.91	2.75	5.02	14.07	6.58
Merged-chr11-95347689-1	chr11	95347589	95347789	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	10671.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.85	0.0	9.13	2.41	5.32	6.9	4.32	5.33	3.74	6.53	4.02	8.14
Merged-chr13-41501019-1	chr13	41500919	41501119	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13659.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.63	3.27	6.28	2.82	8.18	15.68	3.99	5.16	5.7	14.56	5.02	3.76
Merged-chr8-79407419-3	chr8	79407324	79407524	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-7956.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.65	5.53	14.83	11.26	1.64	2.51	4.65	6.7	5.31	2.51	13.06	8.77
Merged-chr7-80639296-2	chr7	80639204	80639404	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040343, intron 3 of 4)	intron (NR_040343, intron 3 of 4)	3287.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.85	3.02	12.55	8.45	10.23	5.64	5.98	4.63	3.54	1.51	3.52	2.19
Merged-chr16-4630826-1	chr16	4630726	4630926	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 21 of 27)	intron (NM_030205, intron 21 of 27)	-5880.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	3.02	1.14	3.62	2.45	6.9	1.66	1.74	2.16	3.01	5.53	6.58
Merged-chr2-113475522-1	chr2	113475422	113475622	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	34458.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.81	1.01	0.0	6.84	1.23	0.63	5.31	9.36	1.57	1.0	2.01	0.63
Merged-chr19-10284747-1	chr19	10284647	10284847	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	20130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.65	7.04	9.13	4.42	7.36	3.76	5.31	8.19	2.75	4.52	3.01	5.01
Merged-chr19-47449101-2	chr19	47448989	47449189	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	MIR|SINE|MIR	15322.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	8.08	14.09	11.41	7.64	7.77	7.84	3.32	4.37	17.11	7.03	10.55	3.76
Merged-chr1-91035608-1	chr1	91035508	91035708	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-17836.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.85	1.76	4.56	2.01	2.45	0.94	0.66	2.02	4.72	0.5	2.51	8.46
Merged-chr4-138464101-2	chr4	138464003	138464203	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8955.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	12.11	9.31	10.27	10.05	7.36	14.11	9.97	5.61	6.69	5.02	1.51	2.19
Merged-chr11-32536927-1	chr11	32536827	32537027	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	3661.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.83	4.28	1.14	0.0	2.45	9.72	7.31	4.07	3.34	7.03	2.01	4.7
Merged-chr11-118480909-2	chr11	118480824	118481024	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153103, intron 3 of 13)	MTA_Mm|LTR|ERVL-MaLR	4092.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.04	3.02	10.84	2.41	6.95	5.64	5.65	6.62	3.93	6.03	9.04	3.76
Merged-chr4-62205424-1	chr4	62205324	62205524	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290351, intron 1 of 3)	intron (NM_001290351, intron 1 of 3)	2778.0	NM_001290353	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	1.21	1.01	4.56	2.01	6.14	2.51	2.66	10.01	3.15	5.02	4.02	5.64
Merged-chr9-116181823-1	chr9	116181723	116181923	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6460.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.46	2.77	0.0	2.41	2.45	4.39	5.65	6.39	1.97	5.52	5.53	3.76
Merged-chr7-83399930-1	chr7	83399830	83400030	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185001.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.04	5.79	15.97	5.63	4.09	2.51	6.64	4.29	6.69	3.01	6.53	8.14
Merged-chr7-43539877-1	chr7	43539777	43539977	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-6706.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	3.23	1.26	3.42	5.63	7.36	4.39	1.33	6.2	1.57	4.52	4.02	3.13
Merged-chr1-88248807-1	chr1	88248707	88248907	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 27 of 41)	intron (NM_001281466, intron 27 of 41)	20601.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.4	0.25	2.28	4.83	3.68	1.88	5.65	5.1	3.54	4.02	3.01	8.77
Merged-chr4-62582758-1	chr4	62582658	62582858	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	22911.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.63	1.51	1.71	2.82	1.64	4.08	4.65	5.69	1.18	1.51	3.52	2.51
Merged-chr14-70791612-1	chr14	70791512	70791712	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	17231.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	0.0	0.5	2.28	1.61	0.82	0.0	0.0	0.0	9.44	10.54	17.08	16.92
Merged-chr12-105796200-1	chr12	105796100	105796300	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	11503.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	2.83	2.52	8.56	5.23	5.73	2.2	4.65	5.97	3.93	9.04	15.58	1.88
Merged-chr6-114348426-1	chr6	114348326	114348526	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49510.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	2.42	5.28	7.99	7.24	1.23	2.82	6.64	5.1	3.34	4.52	2.01	0.63
Merged-chr2-145885392-1	chr2	145885292	145885492	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-17849.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.81	3.77	2.28	0.0	2.05	4.7	4.32	8.27	4.33	5.02	5.02	2.51
Merged-chr18-4288794-1	chr18	4288694	4288894	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	64159.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.23	1.51	0.0	0.0	6.55	3.45	0.0	5.19	7.87	0.0	9.04	6.89
Merged-chr9-122125864-2	chr9	122125757	122125957	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	8398.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	3.63	5.79	4.56	6.84	3.68	7.53	3.32	6.11	14.16	5.52	3.52	6.89
Merged-chr15-57037968-1	chr15	57037868	57038068	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	227193.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	2.42	2.26	6.85	3.62	11.45	7.21	6.98	5.41	3.34	8.03	4.02	3.45
Merged-chr9-77734653-1	chr9	77734553	77734753	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19882.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.27	2.26	4.56	10.05	6.95	3.76	2.33	4.6	3.74	2.01	3.52	3.45
Merged-chr10-54016356-1	chr10	54016256	54016456	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 4 of 12)	intron (NM_008548, intron 4 of 12)	59440.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.81	1.51	1.14	0.0	4.91	3.14	0.0	7.04	3.15	0.0	0.0	1.25
Merged-chr14-74764309-1	chr14	74764209	74764409	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	32012.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.23	5.79	0.0	2.01	7.36	6.59	0.66	5.41	7.87	8.54	5.02	5.95
Merged-chr1-88290101-2	chr1	88290026	88290226	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12547.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	7.27	6.54	6.28	3.22	10.23	6.27	3.99	4.99	9.64	3.51	14.57	5.33
Merged-chr10-105186817-1	chr10	105186717	105186917	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177368)	TTS (NM_177368)	387662.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.21	0.25	0.57	7.64	1.64	2.51	5.31	5.58	3.74	0.5	3.01	1.88
Merged-chr10-40448194-1	chr10	40448094	40448294	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	98886.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	1.21	1.51	2.85	2.41	6.95	2.82	1.33	5.16	3.74	5.02	6.03	3.45
Merged-chr1-62679670-1	chr1	62679570	62679770	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-23647.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.75	1.14	4.83	5.32	1.57	6.98	5.69	0.79	3.51	4.02	3.45
Merged-chrX-109139851-1	chrX	109139751	109139951	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	44444.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	2.02	2.77	2.28	0.4	3.27	5.64	1.33	4.54	1.77	5.52	2.01	2.82
Merged-chr14-52390361-1	chr14	52390261	52390461	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146271, exon 1 of 1)	exon (NM_146271, exon 1 of 1)	410.0	NM_146271	258268.0	Mm.377402	NM_146271	ENSMUSG00000063867	Olfr1511	MOR223-9	olfactory receptor 1511	protein-coding	1.62	3.02	6.85	4.83	7.36	2.82	8.64	5.05	0.0	1.0	0.0	0.31
Merged-chr5-114647491-1	chr5	114647391	114647591	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10930.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.63	4.02	1.71	4.02	7.77	7.53	4.65	2.33	2.56	7.03	0.5	0.63
Merged-chr19-3942406-1	chr19	3942306	3942506	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001161428, exon 6 of 10)	exon (NM_001161428, exon 6 of 10)	7220.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	4.85	2.77	2.85	3.62	1.64	6.27	0.33	5.5	4.92	2.01	6.53	4.39
Merged-chr9-118667658-1	chr9	118667558	118667758	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44034.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.4	2.26	5.13	2.41	7.77	2.51	1.99	4.32	1.97	3.51	9.55	1.88
Merged-chr6-94282772-1	chr6	94282672	94282872	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	1145.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	1.51	3.99	4.83	2.86	4.39	4.65	5.16	0.39	0.0	1.0	0.31
Merged-chr19-55719897-1	chr19	55719797	55719997	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17693.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	1.62	6.04	4.56	2.01	4.5	4.08	9.63	5.58	7.87	0.0	1.51	4.07
Merged-chr2-133457001-1	chr2	133456901	133457101	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95158.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.85	4.53	5.13	1.61	4.91	2.51	5.98	5.83	4.92	2.01	1.0	2.51
Merged-chr2-94265388-1	chr2	94265288	94265488	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3989.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	6.46	0.75	3.42	2.01	6.14	6.9	3.32	8.13	5.51	3.01	14.07	7.52
Merged-chr16-76561853-1	chr16	76561753	76561953	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	13058.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	6.06	2.52	1.71	6.03	1.23	10.98	4.98	4.63	6.49	5.52	1.51	4.39
Merged-chr15-72871468-1	chr15	72871368	72871568	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-61144.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.42	2.52	3.99	8.04	2.86	4.39	3.32	5.69	2.75	1.0	12.06	2.82
Merged-chr9-70049984-1	chr9	70049884	70050084	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR37B|LTR|ERV1	-11896.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	1.62	0.5	12.55	5.63	1.64	5.64	3.32	4.85	3.34	4.02	5.02	4.07
Merged-chr3-15586876-1	chr3	15586776	15586976	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11811.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0.0	0.0	0.0	0.0	1.64	0.31	0.0	0.03	7.28	4.52	5.02	5.33
Merged-chr18-61647277-2	chr18	61647154	61647354	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029557)	TTS (NR_029557)	640.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	6.06	4.28	2.85	0.8	5.73	5.33	6.98	5.72	6.88	9.54	8.04	5.95
Merged-chr3-108232317-1	chr3	108232217	108232417	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5718.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	2.42	4.28	4.56	9.65	3.27	5.33	6.98	5.27	3.15	0.5	11.56	3.76
Merged-chr3-79177778-1	chr3	79177678	79177878	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-31903.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.21	5.79	3.42	4.42	2.45	5.02	5.65	7.21	4.13	12.55	12.56	11.28
Merged-chr2-75701504-1	chr2	75701404	75701604	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	3159.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	8.48	2.52	1.71	4.02	2.86	7.21	2.66	3.53	7.08	4.52	8.54	5.01
Merged-chr9-21017406-1	chr9	21017306	21017506	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010493, intron 1 of 6)	RSINE1|SINE|B4	1466.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	8.08	10.82	3.42	5.63	3.68	16.31	5.31	1.6	9.83	6.03	3.52	7.21
Merged-chr14-64794948-3	chr14	64794842	64795042	+	616.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 37 of 39)	intron (NM_001081177, intron 37 of 39)	142411.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	10.5	7.8	12.55	18.9	4.91	10.66	5.98	5.83	6.49	10.04	5.53	9.08
Merged-chr11-98777017-3	chr11	98776936	98777136	+	616.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1659.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	11.71	13.33	6.85	3.62	6.95	9.41	3.65	5.05	9.44	11.05	13.06	5.64
Merged-chr7-90134557-2	chr7	90134450	90134650	+	616.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	4337.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.85	9.56	4.56	7.64	4.09	13.8	8.97	3.84	3.93	6.03	4.52	10.34
Merged-chr6-128846257-2	chr6	128846141	128846341	+	616.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19926.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.44	4.28	0.57	1.61	3.68	5.02	3.65	4.01	3.74	7.53	8.54	7.83
Merged-chr2-69778224-2	chr2	69778134	69778334	+	616.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	11252.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	9.69	2.01	1.71	0.8	7.77	2.51	4.65	7.18	8.26	4.02	7.03	5.64
Merged-chr1-85995024-1	chr1	85994924	85995124	+	616.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26918.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	4.04	4.28	7.99	1.61	5.73	4.7	2.66	4.07	10.82	9.04	14.07	10.02
Merged-chr6-145126586-1	chr6	145126486	145126686	+	616.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	Lx9|LINE|L1	4847.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.81	2.52	5.7	0.8	11.45	6.27	7.31	7.18	3.74	0.5	5.02	6.58
Merged-chr5-123019531-1	chr5	123019431	123019631	+	616.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	4457.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.44	3.27	3.42	5.23	6.14	9.09	4.32	5.27	7.08	7.53	6.03	4.07
Merged-chr2-28539327-1	chr2	28539227	28539427	+	616.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5863.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	3.23	5.79	5.7	5.23	7.36	4.7	7.31	4.57	5.9	4.52	4.52	4.7
Merged-chr13-64100411-2	chr13	64100323	64100523	+	616.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 9 of 11)	intron (NM_001001321, intron 9 of 11)	-11222.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	8.08	6.54	7.42	5.23	2.86	3.76	1.66	9.56	10.62	8.03	13.06	8.14
Merged-chr5-125442163-5	chr5	125442031	125442231	+	616.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359486, intron 1 of 3)	intron (NM_001359486, intron 1 of 3)	563.0	NM_029752	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	5.65	4.53	10.84	6.03	11.45	5.02	5.31	4.15	8.26	10.04	6.03	6.89
Merged-chr15-97945526-3	chr15	97945419	97945619	+	616.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18710.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	10.09	6.54	10.84	6.44	7.77	8.47	7.97	4.21	9.83	12.55	8.04	6.89
Merged-chr3-144678307-1	chr3	144678207	144678407	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42028.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	1.62	1.51	0.0	2.82	5.32	4.39	1.0	5.55	2.95	3.01	2.01	3.45
Merged-chr15-95827680-2	chr15	95827591	95827791	+	616.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2381.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	15.75	8.55	12.55	7.24	7.77	8.15	3.65	4.79	11.01	11.05	5.53	6.27
Merged-chr16-10356292-1	chr16	10356192	10356392	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-25007.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	1.21	2.26	4.56	3.62	5.32	5.64	2.33	5.33	3.15	12.55	4.52	4.07
Merged-chr2-16334501-1	chr2	16334401	16334601	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21803.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	10.09	4.53	3.42	4.83	6.14	2.51	6.64	4.93	3.15	6.03	2.51	2.82
Merged-chrX-159840008-1	chrX	159839908	159840108	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001135728)	promoter-TSS (NM_001135728)	-460.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	8.88	5.53	2.28	0.8	3.27	6.27	7.64	5.72	6.49	4.52	1.51	2.82
Merged-chr9-66359116-1	chr9	66359016	66359216	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	8666.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.25	3.02	6.85	6.44	2.45	7.84	7.64	6.64	4.72	5.02	3.01	4.07
Merged-chr2-102736769-1	chr2	102736669	102736869	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 2 of 10)	intron (NM_001077514, intron 2 of 10)	9991.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	5.25	5.03	4.56	4.42	3.27	5.33	3.32	6.2	7.87	3.01	4.02	4.39
Merged-chr6-146913566-1	chr6	146913466	146913666	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	25072.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.23	0.0	0.57	1.21	2.05	5.02	9.3	6.42	5.11	5.02	4.02	5.01
Merged-chr5-114934727-1	chr5	114934627	114934827	+	616.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 3 of 4)	intron (NM_001359946, intron 3 of 4)	-7475.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.4	4.78	3.42	0.0	0.82	4.39	1.99	1.07	8.46	12.55	5.02	6.58
Merged-chr7-30614623-2	chr7	30614532	30614732	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1898.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	6.86	4.02	6.28	6.03	3.27	5.96	1.99	2.97	7.47	8.03	11.05	2.19
Merged-chr4-59786065-2	chr4	59785938	59786138	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2183.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	3.23	2.01	8.56	1.61	1.64	4.7	2.66	3.22	6.88	5.02	3.52	5.01
Merged-chr11-103218386-2	chr11	103218313	103218513	+	616.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177801)	promoter-TSS (NM_177801)	19.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	7.27	7.04	6.28	2.41	2.05	5.64	5.31	4.46	6.1	4.52	8.04	5.01
Merged-chr1-178146689-2	chr1	178146593	178146793	+	616.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-40724.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	3.23	8.3	5.7	15.28	8.18	3.76	1.0	7.6	5.9	1.0	3.01	5.33
Merged-chr17-36220363-1	chr17	36220263	36220463	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30212.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	5.25	4.78	3.42	3.62	5.73	6.59	4.32	4.07	4.52	3.51	4.02	4.07
Merged-chr6-59178294-1	chr6	59178194	59178394	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-30576.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	4.44	2.52	3.99	3.62	3.27	3.76	4.32	4.46	1.57	2.51	2.01	2.82
Merged-chrX-36254376-1	chrX	36254276	36254476	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	58472.0	NM_001358476	72693.0	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	3.23	0.0	3.42	2.41	1.64	5.33	4.65	7.21	4.92	1.0	0.0	1.25
Merged-chr12-81796738-1	chr12	81796638	81796838	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR18-int|LTR|ERVK	-15568.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.25	2.77	0.57	2.41	6.55	5.64	0.66	8.05	9.05	13.05	8.04	4.7
Merged-chr10-39067172-2	chr10	39067070	39067270	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010681, intron 16 of 37)	B1F1|SINE|Alu	66730.0	NM_001359442	66337.0	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	6.06	1.76	4.56	5.23	3.27	4.7	3.32	8.61	10.62	9.04	12.56	12.22
Merged-chr5-108034366-1	chr5	108034266	108034466	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31308.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	2.83	1.01	0.57	4.02	4.5	5.64	6.98	6.42	2.36	3.01	6.53	1.88
Merged-chr13-102021837-1	chr13	102021737	102021937	+	616.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-253620.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.88	5.28	4.56	5.63	6.55	4.39	2.66	2.72	10.42	13.56	16.08	15.35
Merged-chr19-15998323-2	chr19	15998218	15998418	+	616.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	13243.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	7.67	6.79	6.85	8.04	8.18	7.84	0.66	1.77	13.57	5.52	4.02	2.82
Merged-chr13-23436430-3	chr13	23436346	23436546	+	616.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5429.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	8.48	5.79	7.99	3.62	7.77	7.53	9.3	5.21	10.42	2.51	7.03	7.83
Merged-chr17-44077048-3	chr17	44076960	44077160	+	616.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1742.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	3.23	10.56	14.26	4.02	6.55	5.02	2.66	3.93	8.26	5.02	4.02	5.64
Merged-chr13-49200209-3	chr13	49200099	49200299	+	616.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12652.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	2.83	6.79	7.42	4.42	0.82	7.21	1.33	4.57	7.47	1.51	7.54	7.21
Merged-chr4-141507048-3	chr4	141506973	141507173	+	616.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	31524.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	6.06	7.55	7.42	1.61	10.64	6.27	2.33	5.78	9.44	9.04	10.05	12.53
Merged-chr13-58457145-2	chr13	58457039	58457239	+	616.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53796.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	10.09	6.79	12.55	6.84	3.68	2.82	3.65	11.41	9.64	5.02	23.11	7.83
Merged-chr19-34520865-2	chr19	34520777	34520977	+	616.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	6597.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.46	2.01	6.85	6.03	0.0	6.59	4.98	2.83	10.03	8.54	8.54	7.21
Merged-chr13-95390410-2	chr13	95390299	95390499	+	616.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15042.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	5.65	6.54	1.71	3.62	5.32	4.7	4.32	6.79	6.69	5.02	6.53	3.13
Merged-chr2-93418541-2	chr2	93418429	93418629	+	616.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001136055)	TTS (NM_001136055)	3478.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	10.09	5.28	1.14	5.63	3.27	8.78	5.98	5.16	6.88	8.54	6.53	2.19
Merged-chr2-4446181-3	chr2	4446023	4446223	+	616.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45147.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	1.62	2.52	0.0	4.83	2.86	2.2	6.64	1.6	6.88	5.02	14.57	3.45
Merged-chr16-98041868-2	chr16	98041761	98041961	+	616.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40578.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	4.04	2.01	3.42	1.61	5.73	3.45	4.98	5.89	8.46	9.04	11.56	8.14
Merged-chr1-120247439-3	chr1	120247303	120247503	+	616.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	L1MB7|LINE|L1	17877.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	2.83	3.77	3.99	8.04	2.86	3.76	5.31	12.34	9.05	5.52	10.05	7.21
Merged-chr15-85610769-3	chr15	85610692	85610892	+	616.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28971.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	10.5	7.8	8.56	10.46	9.41	3.76	4.32	5.5	9.64	3.51	6.53	6.89
Merged-chr10-81178808-1	chr10	81178708	81178908	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_028549)	promoter-TSS (NR_028549)	-153.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	10.5	6.04	3.42	6.03	2.45	2.51	3.65	4.09	6.29	1.51	5.02	2.19
Merged-chr15-77775657-1	chr15	77775557	77775757	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 21 of 40)	intron (NM_022410, intron 21 of 40)	-18647.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	2.02	4.53	2.85	4.42	3.27	4.39	2.66	1.18	3.34	2.51	4.52	5.95
Merged-chr15-82342207-1	chr15	82342107	82342307	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177391, intron 1 of 1)	intron (NM_177391, intron 1 of 1)	1028.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	5.65	4.02	1.14	0.8	4.09	9.41	2.66	4.63	6.1	3.01	4.52	1.88
Merged-chr16-75769164-1	chr16	75769064	75769264	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2346.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	14.13	4.53	9.13	9.25	1.64	5.33	4.32	6.9	6.69	8.03	4.52	5.33
Merged-chr2-44345631-1	chr2	44345531	44345731	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-280307.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	4.04	2.01	2.28	0.0	1.23	4.39	3.32	1.37	8.26	2.51	8.04	2.51
Merged-chrX-56374598-1	chrX	56374498	56374698	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183030)	promoter-TSS (NM_183030)	81.0	NM_183030	320237.0	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	protein-coding	1.62	1.01	3.99	1.21	6.14	3.76	0.66	5.66	0.59	3.01	0.0	3.76
Merged-chr10-21188905-1	chr10	21188805	21189005	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152786)	TTS (NR_152786)	1961.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	4.85	1.26	9.13	1.61	2.05	8.78	1.99	5.36	6.88	5.02	6.03	3.76
Merged-chr2-48619275-1	chr2	48619175	48619375	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-194834.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.02	1.26	6.28	10.46	5.32	1.88	7.64	5.55	2.56	1.0	6.03	6.58
Merged-chrX-37084783-1	chrX	37084683	37084883	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026055, intron 1 of 2)	intron (NM_026055, intron 1 of 2)	439.0	NM_026055	67248.0	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	2.02	4.78	1.71	2.82	4.09	2.2	6.98	6.08	5.31	4.52	7.54	5.95
Merged-chr3-86136001-1	chr3	86135901	86136101	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	2857.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	10.5	7.04	7.99	5.23	0.0	1.25	0.0	0.95	1.57	3.51	0.0	0.94
Merged-chr11-8612290-1	chr11	8612190	8612390	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	MLT1A0|LTR|ERVL-MaLR	52245.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.83	3.77	1.14	0.0	2.45	12.54	1.33	2.19	12.78	8.03	3.01	0.63
Merged-chr12-91606803-1	chr12	91606703	91606903	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16316.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	2.42	5.79	9.7	1.61	3.68	5.64	2.99	10.88	6.88	4.52	9.55	3.76
Merged-chrX-73758108-1	chrX	73758008	73758208	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019587, intron 1 of 34)	intron (NM_019587, intron 1 of 34)	1005.0	NM_019587	140571.0	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	4.04	1.76	3.42	3.62	9.0	3.14	2.66	5.16	5.11	0.0	5.53	5.95
Merged-chr1-58697858-1	chr1	58697758	58697958	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1869.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	1.21	2.01	8.56	5.63	5.32	5.02	4.65	7.09	3.74	1.51	4.52	2.19
Merged-chr3-14667343-1	chr3	14667243	14667443	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1|DNA|hAT-Charlie	25616.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	2.83	4.02	2.28	1.61	4.91	6.27	2.66	4.32	4.33	2.01	11.56	3.76
Merged-chr3-127932643-1	chr3	127932543	127932743	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040552, intron 3 of 4)	intron (NR_040552, intron 3 of 4)	16472.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	5.65	5.79	6.28	3.62	6.95	6.9	10.3	6.76	6.88	5.52	22.61	6.27
Merged-chr4-86666958-1	chr4	86666858	86667058	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	B1F|SINE|Alu	3101.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.27	6.29	1.71	6.03	10.23	4.7	8.3	2.24	3.74	5.52	1.0	0.31
Merged-chr5-16411766-1	chr5	16411666	16411866	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-141729.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	1.62	4.53	4.56	2.82	0.82	1.57	6.98	4.57	2.16	2.51	0.5	2.82
Merged-chr2-77268731-1	chr2	77268631	77268831	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	11861.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	8.08	4.78	3.42	3.62	5.32	4.39	0.66	9.45	4.13	9.04	11.05	9.08
Merged-chr10-26779552-1	chr10	26779452	26779652	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	7040.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	2.02	3.27	5.7	2.01	4.91	4.7	3.32	11.21	7.08	5.02	4.02	6.58
Merged-chrUn_JH584304-88157-1	chrUn_JH584304	88057	88257	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-28468.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.42	10.04	11.05	9.71
Merged-chr10-85388921-1	chr10	85388821	85389021	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	2107.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	1.01	0.0	0.0	0.0	0.0	0.0	0.03	12.39	13.05	11.05	4.39
Merged-chr13-110368652-2	chr13	110368573	110368773	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11501.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0.81	2.52	0.0	1.61	5.73	4.7	6.64	4.21	2.75	4.52	3.52	5.33
Merged-chr10-93791235-1	chr10	93791135	93791335	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-40320.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	8.06	5.52	8.54	14.72
Merged-chr13-55587133-1	chr13	55587033	55587233	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-6002.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	2.83	0.5	2.28	6.44	9.82	6.27	1.33	0.9	12.78	9.04	7.54	8.14
Merged-chr8-123950279-1	chr8	123950179	123950379	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1014.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	10.9	2.52	4.56	2.82	7.36	2.51	2.66	4.74	6.29	12.05	4.52	6.27
Merged-chr6-125661718-1	chr6	125661618	125661818	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 38 of 51)	intron (NM_011708, intron 38 of 51)	-28701.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	6.46	7.8	3.42	5.63	3.27	5.64	4.98	3.06	12.19	10.54	4.52	3.13
Merged-chr19-53264520-1	chr19	53264420	53264620	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9315.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	4.04	1.01	1.71	7.24	6.55	0.63	5.31	4.77	4.72	9.54	4.52	1.88
Merged-chr2-71526870-1	chr2	71526770	71526970	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-2575.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	6.06	6.29	6.28	8.45	9.0	5.64	1.0	5.27	5.31	12.05	5.02	4.7
Merged-chr12-103337929-1	chr12	103337829	103338029	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18072.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.44	1.01	6.85	5.23	9.41	0.63	5.31	4.57	5.31	4.02	4.02	4.07
Merged-chr11-23979520-2	chr11	23979424	23979624	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84254.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	1.62	2.52	6.28	5.63	7.36	6.9	4.32	6.0	6.49	7.53	11.05	4.39
Merged-chr8-11297656-1	chr8	11297556	11297756	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-15149.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	1.62	2.26	3.42	1.61	2.45	0.31	3.99	4.88	0.0	2.01	0.0	0.63
Merged-chr16-23626002-2	chr16	23625898	23626098	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16079.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	2.02	2.77	6.28	7.24	0.82	7.53	1.0	9.03	10.23	3.01	10.05	6.89
Merged-chr6-29248568-1	chr6	29248468	29248668	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23920.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	2.02	2.52	6.85	0.8	9.0	4.7	1.0	6.11	4.52	11.55	1.51	6.27
Merged-chr15-57885972-1	chr15	57885872	57886072	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	6446.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	1.21	2.52	1.71	0.4	2.45	1.25	4.98	0.06	1.97	0.0	1.51	3.13
Merged-chrX-141228369-1	chrX	141228269	141228469	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053185, intron 5 of 44)	intron (NM_053185, intron 5 of 44)	245707.0	NM_053185	94216.0	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding	4.85	5.28	9.13	10.86	3.27	8.15	3.99	7.93	7.47	12.55	14.57	3.76
Merged-chr6-38875180-1	chr6	38875080	38875280	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	1010.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.65	4.28	5.13	3.62	4.91	0.94	1.99	4.79	5.51	5.02	5.02	0.0
Merged-chr11-68030837-1	chr11	68030737	68030937	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018768, intron 6 of 7)	HAL1ME|LINE|L1	64379.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	2.42	1.26	4.56	3.62	1.64	5.64	0.66	6.59	1.77	8.54	5.53	4.7
Merged-chr11-61470349-1	chr11	61470249	61470449	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15082.0	NM_001347545	76293.0	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	4.04	2.01	4.56	0.0	2.86	4.39	3.99	6.14	1.38	1.0	4.52	4.07
Merged-chr10-60009771-1	chr10	60009671	60009871	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026937, intron 3 of 10)	intron (NM_026937, intron 3 of 10)	6444.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.4	2.01	0.0	1.21	5.32	0.63	1.66	1.46	2.56	1.51	1.51	0.63
Merged-chr14-70519823-1	chr14	70519723	70519923	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_033241, intron 1 of 19)	CpG	437.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.81	6.29	2.28	10.05	2.86	7.53	6.64	2.41	2.16	5.02	2.01	2.51
Merged-chr11-58235435-1	chr11	58235335	58235535	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20458.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.85	4.53	10.84	4.83	9.82	6.27	5.31	6.08	4.72	2.01	7.54	3.45
Merged-chr9-66131111-1	chr9	66131011	66131211	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4500.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	3.63	3.02	2.85	6.84	4.5	5.96	2.33	2.78	5.9	3.01	1.51	3.13
Merged-chr9-57504035-1	chr9	57503935	57504135	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133982)	promoter-TSS (NM_133982)	-67.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	8.08	2.52	5.13	3.62	4.5	8.78	3.32	6.67	5.7	5.02	3.01	2.82
Merged-chr12-34712595-1	chr12	34712495	34712695	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-183706.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.04	3.27	5.13	5.63	5.32	1.57	4.32	3.11	8.65	5.02	10.05	4.7
Merged-chr5-96902943-2	chr5	96902841	96903041	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-18331.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.65	5.79	2.85	1.61	2.45	5.64	2.66	4.79	10.03	3.51	10.55	6.58
Merged-chr7-89332360-1	chr7	89332260	89332460	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	6427.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	1.51	3.42	5.23	4.91	4.7	5.65	6.0	7.67	8.03	6.53	3.76
Merged-chr19-10100902-1	chr19	10100802	10101002	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019699, intron 1 of 11)	intron (NM_019699, intron 1 of 11)	601.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	4.04	8.55	1.14	2.82	3.68	5.96	1.99	5.05	4.72	4.52	11.05	6.27
Merged-chr6-92209925-1	chr6	92209825	92210025	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030081, intron 2 of 11)	intron (NM_030081, intron 2 of 11)	4886.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.81	0.5	0.57	0.8	2.45	5.64	1.33	5.5	1.77	4.02	4.52	5.33
Merged-chr11-26165090-1	chr11	26164990	26165190	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-37150.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.81	3.02	5.7	5.23	3.27	1.88	2.66	4.07	7.47	4.52	11.05	4.39
Merged-chrX-104418125-1	chrX	104418025	104418225	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-4279.0	NM_009592	11306.0	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	4.04	2.77	3.42	0.8	4.91	3.45	5.98	5.64	1.57	3.01	2.01	0.63
Merged-chr1-74323096-1	chr1	74322996	74323196	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9514.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	7.27	5.53	1.14	2.41	5.73	6.9	6.98	1.63	3.15	8.03	4.52	5.64
Merged-chr17-35166855-1	chr17	35166755	35166955	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1978.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	1.62	1.51	4.56	2.01	2.05	4.08	0.0	2.16	9.44	2.51	1.51	6.89
Merged-chr7-44554638-1	chr7	44554538	44554738	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	-673.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	5.28	7.99	6.44	4.91	2.51	0.0	0.98	8.65	12.55	5.02	5.33
Merged-chr15-94544517-1	chr15	94544417	94544617	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	857.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	1.62	4.78	3.42	1.61	6.14	3.76	1.99	2.72	6.69	7.53	13.06	7.21
Merged-chr17-36016554-1	chr17	36016454	36016654	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4006.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	2.41	0.82	1.25	3.99	6.56	0.0	0.0	2.51	0.31
Merged-chr9-20699333-1	chr9	20699233	20699433	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357639, intron 1 of 5)	LTR33A_|LTR|ERVL	27670.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.5	1.14	5.63	6.95	0.94	3.65	5.3	6.88	5.52	6.53	5.64
Merged-chr2-59881108-1	chr2	59881008	59881208	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159636, intron 1 of 10)	Lx8|LINE|L1	1498.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.85	4.53	5.7	2.41	3.27	1.88	4.65	6.22	3.15	4.02	5.02	1.57
Merged-chr14-55734094-1	chr14	55733994	55734194	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11590.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.4	3.52	3.99	1.61	1.23	6.59	1.99	3.34	7.87	6.03	10.55	6.27
Merged-chr19-9137287-1	chr19	9137187	9137387	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-1721.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	4.85	11.32	6.85	2.41	10.64	3.76	1.33	4.12	3.15	11.05	9.55	2.82
Merged-chr1-134303800-1	chr1	134303700	134303900	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001144855, intron 24 of 28)	intron (NM_001144855, intron 24 of 28)	13796.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.0	1.01	0.0	1.21	2.05	12.86	8.3	4.37	6.29	7.53	7.54	4.7
Merged-chr1-67359954-1	chr1	67359854	67360054	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	236927.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	1.62	0.0	0.57	0.8	5.32	2.2	5.31	12.11	1.57	1.0	11.05	0.0
Merged-chr1-178144925-1	chr1	178144825	178145025	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-42492.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.81	3.77	1.14	0.8	6.95	7.21	6.31	4.74	1.97	5.52	3.52	5.01
Merged-chrUn_JH584304-66794-1	chrUn_JH584304	66694	66894	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-7105.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.88	5.52	8.54	10.96
Merged-chr9-85410841-1	chr9	85410741	85410941	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83691.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.62	5.03	1.14	3.62	2.45	5.64	2.66	5.38	2.75	6.03	8.54	1.57
Merged-chr13-94156130-1	chr13	94156030	94156230	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	98334.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.63	0.0	3.42	4.02	5.73	1.88	3.32	5.1	1.38	2.51	6.03	1.25
Merged-chr4-53076258-1	chr4	53076158	53076358	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 20 of 49)	MTD|LTR|ERVL-MaLR	64378.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	2.77	7.99	0.8	0.82	1.88	3.32	5.89	8.46	5.02	9.04	1.57
Merged-chr17-34093485-2	chr17	34093400	34093600	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	1121.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	20.19	7.29	7.99	5.63	4.91	8.47	5.65	2.61	16.92	9.54	10.05	7.52
Merged-chr2-103565385-1	chr2	103565285	103565485	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-925.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.25	5.28	5.13	0.8	3.27	2.2	1.33	4.68	5.7	4.52	5.02	4.07
Merged-chr13-34693285-1	chr13	34693185	34693385	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER117|DNA|hAT-Charlie	40362.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	1.62	3.52	6.85	5.63	4.91	4.08	5.31	8.27	2.75	3.01	5.53	1.25
Merged-chr7-141048981-2	chr7	141048885	141049085	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-12289.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	11.31	5.03	9.13	6.44	5.32	7.21	4.98	5.89	6.69	8.54	10.05	6.89
Merged-chr6-120019440-1	chr6	120019340	120019540	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198703, intron 1 of 27)	polypurine|Low_complexity|Low_complexity	14871.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	7.27	3.77	7.99	3.22	10.23	3.45	3.99	6.25	3.34	3.51	2.01	6.89
Merged-chr9-53650882-1	chr9	53650782	53650982	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161618, intron 3 of 17)	intron (NM_001161618, intron 3 of 17)	16625.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.23	1.76	3.42	0.8	3.68	1.88	4.32	6.73	6.1	4.52	7.54	3.76
Merged-chr12-80116484-1	chr12	80116384	80116584	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3471.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	2.42	3.02	0.0	3.62	4.91	5.96	1.66	3.22	10.03	8.03	12.06	5.95
Merged-chr10-21601121-3	chr10	21601024	21601224	+	615.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	7979.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	10.9	6.04	7.99	8.04	9.41	12.54	1.0	5.8	9.44	6.53	11.05	13.47
Merged-chr9-25152785-2	chr9	25152669	25152869	+	615.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-988.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.04	4.78	4.56	1.61	2.86	7.84	6.98	4.51	11.8	9.54	4.52	3.45
Merged-chr11-98767505-2	chr11	98767398	98767598	+	615.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145434)	TTS (NM_145434)	7879.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	6.46	4.02	3.42	5.23	10.23	8.47	1.66	2.86	16.92	11.05	10.05	7.21
Merged-chr10-41883866-3	chr10	41883782	41883982	+	615.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-3557.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	8.08	4.78	2.85	4.42	4.5	9.09	3.32	5.83	9.83	14.06	10.05	4.7
Merged-chr16-55814437-2	chr16	55814228	55814428	+	615.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159394, exon 10 of 12)	exon (NM_001159394, exon 10 of 12)	7810.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	1.21	5.28	0.0	2.01	0.82	6.59	1.33	1.63	3.15	6.53	1.51	0.94
Merged-chr11-105311667-2	chr11	105311573	105311773	+	615.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008626, intron 1 of 29)	intron (NM_008626, intron 1 of 29)	19027.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	2.83	9.31	9.13	4.02	9.41	9.72	6.64	5.38	5.31	4.52	5.02	4.07
Merged-chr12-85078085-1	chr12	85077985	85078185	+	615.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17530.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	4.85	4.53	3.42	5.23	6.95	9.41	9.3	4.68	3.15	0.5	1.0	2.51
Merged-chr15-84891850-1	chr15	84891750	84891950	+	615.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-31578.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	5.25	5.79	3.42	3.22	8.18	10.35	3.65	4.85	10.23	6.53	6.53	4.07
Merged-chr15-55114140-3	chr15	55114060	55114260	+	615.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-578.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	7.67	8.55	2.85	6.03	6.55	9.41	3.32	5.83	8.85	4.02	8.04	6.58
Merged-chr10-22163891-3	chr10	22163778	22163978	+	615.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	IAPEY4_LTR|LTR|ERVK	5269.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	7.27	6.04	6.85	15.28	9.82	10.66	3.32	2.16	14.16	12.05	10.55	5.01
Merged-chr17-8749600-1	chr17	8749500	8749700	+	615.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	-52145.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.23	2.01	14.26	6.84	9.82	6.27	4.65	5.44	2.56	3.01	2.51	2.82
Merged-chr8-110462980-1	chr8	110462880	110463080	+	615.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 24 of 86)	intron (NM_172916, intron 24 of 86)	39376.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	1.01	0.57	1.21	1.64	0.63	0.0	0.0	7.47	11.05	19.6	5.64
Merged-chr7-141403514-2	chr7	141403411	141403611	+	615.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011528)	TTS (NM_011528)	10614.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	10.5	3.02	8.56	5.23	6.14	5.96	9.3	6.17	9.44	5.52	15.07	10.34
Merged-chr5-24387988-2	chr5	24387892	24388092	+	615.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001002897, exon 6 of 14)	exon (NM_001002897, exon 6 of 14)	4151.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	7.27	5.28	10.84	2.82	13.5	13.48	7.31	7.26	7.67	6.03	4.52	6.89
Merged-chr7-120981701-2	chr7	120981570	120981770	+	615.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028955)	promoter-TSS (NM_028955)	642.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	8.88	2.26	6.85	3.22	6.14	5.96	2.66	3.9	7.67	9.04	12.06	6.58
Merged-chr19-47932458-3	chr19	47932347	47932547	+	615.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5265.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	7.67	4.02	10.27	2.41	8.59	10.66	3.65	6.59	9.24	4.02	7.03	8.14
Merged-chr17-64735731-1	chr17	64735631	64735831	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-31380.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.81	1.51	4.56	0.8	1.64	5.96	2.99	5.24	4.33	1.0	7.54	1.25
Merged-chr10-93494262-1	chr10	93494162	93494362	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010401, intron 8 of 19)	CT-rich|Low_complexity|Low_complexity	5494.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	7.27	4.02	7.42	3.62	6.55	5.33	3.99	6.59	0.0	0.0	0.0	2.82
Merged-chr13-112259601-1	chr13	112259501	112259701	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28850.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.04	3.02	1.71	6.44	6.55	9.41	1.33	5.94	1.97	3.51	8.54	2.19
Merged-chr15-103388708-2	chr15	103388599	103388799	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21908.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.86	9.31	0.57	4.42	6.14	7.84	2.99	5.64	9.24	6.53	9.55	3.13
Merged-chr19-59024819-3	chr19	59024730	59024930	+	615.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	51239.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	2.83	6.79	12.55	6.44	5.32	4.7	3.32	9.5	12.0	10.04	5.02	4.7
Merged-chr10-24163428-2	chr10	24163330	24163530	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14113.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.44	6.04	12.55	3.22	8.59	7.21	6.64	3.73	11.8	6.03	7.03	7.52
Merged-chr13-44952618-2	chr13	44952588	44952788	+	615.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025772, intron 7 of 9)	intron (NM_025772, intron 7 of 9)	49408.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.65	1.51	2.28	6.03	7.77	1.57	3.99	2.64	2.36	6.53	3.52	7.52
Merged-chr11-115513320-1	chr11	115513220	115513420	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1073.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	4.04	7.04	2.28	7.64	4.09	5.02	4.32	3.39	4.72	2.51	6.03	3.45
Merged-chr13-48260945-1	chr13	48260845	48261045	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031166)	promoter-TSS (NM_031166)	-482.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	1.21	1.76	0.0	0.4	6.55	4.7	6.64	5.64	5.31	1.51	5.02	1.88
Merged-chr11-76541163-1	chr11	76541063	76541263	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	30221.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	13.73	3.77	3.42	3.22	9.41	5.33	2.99	5.13	8.85	11.55	6.03	8.14
Merged-chr4-47262775-2	chr4	47262660	47262860	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 10 of 39)	intron (NM_009928, intron 10 of 39)	54748.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	8.08	5.28	2.85	4.02	6.55	5.02	3.32	4.35	6.69	2.51	4.02	7.52
Merged-chr7-129756402-1	chr7	129756302	129756502	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	164539.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	1.62	2.77	9.7	4.02	5.73	3.76	4.98	6.14	7.67	3.51	2.01	1.57
Merged-chr1-36447101-1	chr1	36447001	36447201	+	615.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1830.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.65	5.28	4.56	3.62	4.91	5.96	7.97	4.49	4.72	7.03	5.02	1.57
Merged-chr15-87116924-1	chr15	87116824	87117024	+	615.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-427375.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.83	1.26	1.14	2.01	1.64	1.25	2.99	9.22	7.67	8.54	10.05	7.21
Merged-chr6-40580491-1	chr6	40580391	40580591	+	615.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038604, intron 5 of 6)	B4A|SINE|B4	5314.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	3.63	8.55	1.14	1.61	10.64	8.78	10.63	4.49	17.7	7.03	8.04	0.94
Merged-chr6-89449469-1	chr6	89449369	89449569	+	615.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	MTB_Mm|LTR|ERVL-MaLR	-86856.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	10.09	4.02	10.27	9.25	4.09	5.02	2.66	2.89	5.9	7.53	6.53	4.7
Merged-chr17-44438650-1	chr17	44438550	44438750	+	615.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	250078.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	1.62	1.01	1.14	0.0	9.41	3.76	1.66	4.35	8.46	3.01	11.05	8.14
Merged-chr7-80905136-2	chr7	80905069	80905269	+	615.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-107.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	6.86	3.77	1.14	4.83	8.18	8.78	9.63	3.56	6.69	6.03	3.01	1.88
Merged-chr7-45309648-1	chr7	45309548	45309748	+	615.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175130, intron 17 of 24)	intron (NM_175130, intron 17 of 24)	-15310.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	5.65	6.04	8.56	4.83	5.73	8.47	3.65	5.27	10.03	2.51	6.53	5.01
Merged-chr4-9072202-2	chr4	9072119	9072319	+	615.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-197074.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.63	0.75	7.99	5.63	6.14	6.59	4.98	9.11	6.49	6.53	9.04	5.95
Merged-chr5-142912916-3	chr5	142912847	142913047	+	615.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6193.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.27	4.28	13.69	1.61	5.73	8.78	1.66	5.66	9.83	7.53	6.53	5.33
Merged-chr14-34616966-3	chr14	34616810	34617010	+	615.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16768.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	3.23	6.29	3.42	1.21	4.91	3.45	5.31	4.57	6.1	6.03	6.53	2.19
Merged-chr1-125447853-2	chr1	125447762	125447962	+	615.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12135.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	11.31	5.79	7.99	6.03	7.36	10.66	3.32	2.16	13.18	11.05	20.1	3.76
Merged-chr7-99090049-2	chr7	99089960	99090160	+	615.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51084.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	11.31	2.01	5.7	8.04	9.0	2.2	3.32	5.21	0.98	1.51	8.54	7.83
Merged-chr2-46371930-2	chr2	46371828	46372028	+	615.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3c|LINE|L1	675323.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.04	3.02	5.7	5.23	6.95	6.9	4.65	6.0	12.19	3.51	8.04	4.7
Merged-chr3-41082085-2	chr3	41081986	41082186	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027558, intron 1 of 2)	intron (NM_027558, intron 1 of 2)	960.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	6.06	3.02	3.42	3.22	1.64	5.64	2.66	6.14	6.1	5.02	5.53	9.4
Merged-chr5-65880728-1	chr5	65880628	65880828	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17159.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	4.04	1.51	10.84	7.64	7.77	2.2	3.65	4.74	6.49	4.52	2.51	3.76
Merged-chr11-117092869-1	chr11	117092769	117092969	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15521.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	3.23	1.76	5.13	2.01	4.91	6.59	3.99	5.89	6.88	7.03	7.03	1.88
Merged-chr4-41407599-1	chr4	41407499	41407699	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024241, intron 6 of 12)	ORR1E|LTR|ERVL-MaLR	55636.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.25	6.29	7.99	2.01	7.77	3.76	4.32	6.0	1.77	2.51	3.01	2.82
Merged-chr19-9930462-2	chr19	9930369	9930569	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-30936.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.02	1.76	0.0	0.0	7.36	2.51	2.66	4.4	8.26	9.04	3.52	8.14
Merged-chr1-57969446-1	chr1	57969346	57969546	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	78.0	NR_027630	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	3.23	8.3	8.56	7.24	2.05	5.64	7.31	2.94	2.16	2.01	3.52	4.07
Merged-chr3-61244238-1	chr3	61244138	61244338	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120269.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.81	1.51	1.71	4.02	5.73	0.31	4.32	6.22	0.59	2.51	2.01	0.31
Merged-chr16-55480445-1	chr16	55480345	55480545	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14286.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	4.04	3.02	2.28	5.23	4.09	5.96	2.33	5.69	4.92	3.51	11.56	1.57
Merged-chr7-74981160-1	chr7	74981060	74981260	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-49051.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	6.06	3.02	7.99	6.44	1.64	0.0	1.99	6.73	6.88	4.02	11.05	8.77
Merged-chr14-99044943-2	chr14	99044861	99045061	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175245, intron 1 of 2)	PB1D10|SINE|Alu	1175.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	1.62	4.78	1.14	6.84	4.91	6.27	2.99	8.21	6.1	2.01	8.54	3.45
Merged-chr7-96151515-1	chr7	96151415	96151615	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19729.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	4.85	7.29	2.28	4.83	4.09	2.82	4.98	5.58	0.79	3.01	2.01	4.07
Merged-chr4-107738041-2	chr4	107737904	107738104	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53842.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	1.21	6.04	0.0	2.41	4.91	4.39	1.66	1.51	5.51	7.53	9.55	3.45
Merged-chr4-48048883-1	chr4	48048783	48048983	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	-2363.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.63	7.04	0.57	3.62	10.23	7.21	11.29	5.33	5.9	5.02	2.51	9.08
Merged-chr4_GL456216_random-34502-1	chr4_GL456216_random	34402	34602	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 5 of 6)	CpG-10796	18621.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.44	5.52	9.04	12.22
Merged-chr3-149460891-1	chr3	149460791	149460991	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186154.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.04	3.77	1.14	6.03	2.86	2.51	4.98	6.7	7.28	3.01	5.53	4.07
Merged-chr5-105293028-1	chr5	105292928	105293128	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	671.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	2.42	5.03	1.71	1.61	1.64	4.08	4.65	0.9	8.26	1.51	3.52	7.21
Merged-chr9-31042028-2	chr9	31041910	31042110	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115130, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	11366.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.81	1.01	2.28	6.03	3.27	8.78	2.99	5.38	4.13	6.03	7.03	9.71
Merged-chr9-50587287-1	chr9	50587187	50587387	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16562.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	3.63	4.53	9.13	6.84	8.59	8.15	5.31	5.41	3.34	5.52	3.52	6.58
Merged-chr15-36684307-2	chr15	36684214	36684414	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-75341.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.85	9.31	5.7	7.24	11.05	5.33	1.66	5.05	7.08	10.04	9.55	3.45
Merged-chr18-77063576-1	chr18	77063476	77063676	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1632.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	5.25	5.79	3.42	0.8	3.27	7.53	2.99	4.68	2.16	1.0	0.5	2.82
Merged-chr3-121636990-1	chr3	121636890	121637090	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_036457)	TTS (NR_036457)	6495.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	1.62	6.29	5.13	2.41	4.09	3.14	2.33	4.93	7.87	1.0	10.05	5.33
Merged-chr1-171613617-1	chr1	171613517	171613717	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6207.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.81	2.77	3.42	4.02	2.05	4.39	5.65	3.48	0.39	0.5	2.51	1.25
Merged-chr10-130093015-1	chr10	130092915	130093115	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18603.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	1.62	1.51	1.14	4.42	4.09	5.02	3.32	4.68	3.93	2.51	4.52	0.63
Merged-chr8-106416862-1	chr8	106416762	106416962	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	1523.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	7.27	2.26	6.28	3.22	3.27	6.9	1.0	5.19	2.75	4.52	5.02	9.08
Merged-chr12-4080513-1	chr12	4080413	4080613	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2061.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	3.23	3.27	3.99	3.22	9.0	7.53	1.99	4.71	8.26	6.03	5.53	5.33
Merged-chr7-102384170-1	chr7	102384070	102384270	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 2 of 11)	ID_B1|SINE|B4	-57525.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	1.62	5.03	0.0	4.83	0.82	4.08	2.33	5.16	2.75	1.0	9.04	1.25
Merged-chr2-160356952-1	chr2	160356852	160357052	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10113.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.88	7.8	0.0	0.0	0.41	4.7	1.0	1.07	1.97	3.51	0.0	0.0
Merged-chr5-64743220-1	chr5	64743120	64743320	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-60303.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.25	0.0	1.61	3.27	0.31	1.99	2.66	10.82	8.03	9.04	6.27
Merged-chr5-120605081-1	chr5	120604981	120605181	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029408, intron 3 of 4)	intron (NM_029408, intron 3 of 4)	7508.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	3.63	2.77	1.14	3.62	3.27	5.96	2.33	3.39	9.64	6.03	6.03	9.08
Merged-chr15-74926031-1	chr15	74925931	74926131	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29020.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	2.83	7.04	5.7	12.47	1.64	4.39	5.31	6.17	7.67	6.03	2.01	0.63
Merged-chrX-99130287-1	chrX	99130187	99130387	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5774.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	4.85	1.01	2.28	1.21	7.36	2.82	1.99	6.11	4.13	4.52	7.03	9.08
Merged-chr2-29820329-2	chr2	29820249	29820449	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	1.21	3.77	6.85	8.45	11.86	5.33	5.65	3.25	6.1	7.53	12.56	5.01
Merged-chr3-145905775-1	chr3	145905675	145905875	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18487.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	9.69	6.04	9.13	6.03	5.73	3.45	4.65	7.74	1.97	6.03	3.01	2.82
Merged-chr18-46412142-1	chr18	46412042	46412242	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	53674.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	4.28	6.28	2.41	8.18	5.02	5.31	10.15	0.2	1.0	2.01	1.57
Merged-chr19-12830224-1	chr19	12830124	12830324	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-31553.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	5.65	2.52	3.42	4.42	7.77	8.78	5.98	5.16	1.77	3.51	2.01	1.57
Merged-chr7-45336586-1	chr7	45336486	45336686	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010473, exon 1 of 6)	exon (NM_010473, exon 1 of 6)	1317.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.85	1.26	5.7	4.02	2.45	7.53	1.99	1.82	10.62	6.53	8.54	2.19
Merged-chr18-4355518-2	chr18	4355418	4355618	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	1971.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	8.08	7.55	1.71	6.44	7.77	4.39	2.66	4.88	9.64	5.52	10.55	3.76
Merged-chr2-133442733-2	chr2	133442634	133442834	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109425.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.44	7.55	6.28	9.25	12.27	5.02	7.97	6.31	4.33	7.53	2.51	0.94
Merged-chr18-54612059-1	chr18	54611959	54612159	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045400, intron 1 of 2)	intron (NR_045400, intron 1 of 2)	315.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	4.04	3.52	2.85	3.62	1.64	6.59	2.66	5.07	2.16	2.01	4.02	4.07
Merged-chr8-88263097-2	chr8	88262996	88263196	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9307.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	12.11	6.79	3.42	1.21	4.91	13.17	1.33	2.52	10.62	8.54	3.01	2.82
Merged-chr12-83949209-1	chr12	83949109	83949309	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-1399.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	3.23	2.77	10.84	2.82	4.09	9.72	9.3	3.28	5.11	3.51	8.04	1.57
Merged-chr9-7714297-1	chr9	7714197	7714397	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18666.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	8.48	6.04	7.42	1.61	5.32	7.84	3.32	5.27	3.15	3.01	3.52	5.33
Merged-chr6-100335554-1	chr6	100335454	100335654	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48196.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	8.88	3.02	6.28	5.23	4.5	5.96	2.99	6.14	7.28	3.01	6.03	4.39
Merged-chr14-70303090-1	chr14	70302990	70303190	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001135152)	TTS (NM_001135152)	-13593.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	4.85	8.3	4.56	4.83	6.14	9.72	6.98	5.61	12.0	9.04	5.53	1.57
Merged-chr8-126515405-1	chr8	126515305	126515505	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40340.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.25	1.14	0.0	4.5	11.92	3.32	4.57	6.69	5.52	9.04	10.34
Merged-chr17-15829682-1	chr17	15829582	15829782	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3096.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.42	4.78	1.14	6.44	5.73	5.02	7.97	3.79	4.52	4.02	3.01	5.01
Merged-chr15-76765945-2	chr15	76765841	76766041	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-42096.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.04	8.3	4.56	2.41	9.82	10.35	3.99	3.98	10.82	1.0	5.02	8.46
Merged-chr6-143150786-1	chr6	143150686	143150886	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153819, intron 2 of 8)	intron (NR_153819, intron 2 of 8)	3145.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	4.85	6.04	2.28	3.22	6.14	5.33	4.65	6.5	11.21	9.04	11.56	3.13
Merged-chr8-41243288-1	chr8	41243188	41243388	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	3529.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.23	0.5	1.14	0.0	2.45	0.0	0.66	0.59	11.6	9.54	4.52	3.13
Merged-chr11-83739394-1	chr11	83739294	83739494	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7546.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	6.86	4.78	9.13	4.83	5.73	6.9	7.64	3.7	14.16	6.03	9.04	5.95
Merged-chr12-40140948-1	chr12	40140848	40141048	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6720.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	5.65	1.76	3.42	6.03	4.09	6.27	3.99	13.35	9.83	2.51	11.05	4.7
Merged-chr2-18607290-1	chr2	18607190	18607390	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65172.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	8.48	9.06	5.7	4.42	2.86	5.02	2.99	5.69	9.64	0.0	7.54	2.82
Merged-chr15-76233107-2	chr15	76233043	76233243	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001163575, exon 11 of 11)	3' UTR (NM_001163575, exon 11 of 11)	-1765.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.44	4.02	1.14	4.02	5.73	6.27	4.65	5.94	5.9	1.51	9.04	4.07
Merged-chr5-43921727-1	chr5	43921627	43921827	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17B|LTR|ERVK	52918.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.65	5.03	13.12	5.23	1.64	4.39	1.99	3.36	8.65	8.03	3.01	5.64
Merged-chr7-139126052-1	chr7	139125952	139126152	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	40051.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	4.85	7.04	9.7	5.63	8.18	4.39	4.32	4.91	2.75	2.51	3.01	4.07
Merged-chr6-24109336-1	chr6	24109236	24109436	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 7 of 14)	intron (NM_019481, intron 7 of 14)	58756.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	2.02	1.51	5.13	4.42	6.95	6.27	5.98	6.03	1.97	0.5	0.0	0.0
Merged-chr4-70398297-2	chr4	70398196	70398396	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145990, intron 3 of 36)	RLTR16B_MM|LTR|ERVK	12139.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	1.62	4.53	2.28	0.8	9.82	3.14	4.32	4.68	11.41	8.03	17.59	8.14
Merged-chr1-153498318-1	chr1	153498218	153498418	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10658.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	7.27	10.06	10.27	7.24	1.64	4.08	1.0	2.86	11.01	10.04	8.04	2.19
Merged-chr5-99210768-1	chr5	99210668	99210868	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	42159.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.29	7.55	1.14	0.4	1.64	9.41	0.0	0.08	2.56	1.0	0.0	0.31
Merged-chr10-25427666-1	chr10	25427566	25427766	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	19298.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	2.02	4.53	3.42	3.62	3.27	3.76	4.32	4.46	5.51	4.02	6.03	4.39
Merged-chr10-9575800-2	chr10	9575703	9575903	+	614.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99405.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	8.08	4.78	0.57	13.27	7.77	6.9	7.31	6.25	7.47	4.02	7.54	4.39
Merged-chr4-59804953-2	chr4	59804859	59805059	+	614.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172468)	promoter-TSS (NM_172468)	-691.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	2.42	5.03	3.42	8.45	4.5	5.02	6.98	9.93	10.42	5.52	11.56	8.77
Merged-chr12-100188226-2	chr12	100188128	100188328	+	614.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045282, exon 1 of 3)	non-coding (NR_045282, exon 1 of 3)	260.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	8.88	5.79	3.42	4.83	11.05	8.15	9.3	3.31	6.69	3.01	4.52	5.95
Merged-chr8-123235679-2	chr8	123235601	123235801	+	614.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357300, exon 1 of 2)	exon (NM_001357300, exon 1 of 2)	557.0	NM_001357301	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	8.48	12.07	2.85	4.42	10.64	6.27	3.32	5.78	7.08	10.54	14.07	9.4
Merged-chr5-137757422-3	chr5	137757326	137757526	+	614.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	11457.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	12.92	5.53	2.28	2.82	5.32	7.53	4.65	6.14	13.57	6.03	11.56	5.33
Merged-chr9-20644053-2	chr9	20643959	20644159	+	614.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310746)	promoter-TSS (NM_001310746)	708.0	NM_001002846	30843.0	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	7.27	7.8	2.85	6.84	6.55	2.2	4.98	6.25	3.54	7.53	7.03	4.39
Merged-chr9-32445927-2	chr9	32445833	32446033	+	614.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	51948.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	4.04	4.28	6.85	3.22	7.77	7.53	6.64	5.07	8.46	7.53	11.05	8.77
Merged-chr16-48812270-2	chr16	48812196	48812396	+	614.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4560.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	3.63	6.29	7.99	11.66	6.14	5.02	9.63	15.64	4.52	9.54	10.05	3.13
Merged-chr6-52158891-2	chr6	52158783	52158983	+	614.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	359.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	8.08	10.82	10.27	8.85	3.27	5.33	6.31	2.86	10.23	8.03	9.04	15.66
Merged-chr15-98664417-1	chr15	98664317	98664517	+	614.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1528.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	9.29	4.28	7.42	3.22	3.27	4.08	2.66	3.7	9.05	9.04	9.04	8.14
Merged-chr6-97488658-1	chr6	97488558	97488758	+	614.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-838.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.23	3.27	4.56	5.63	9.0	5.96	5.65	5.13	5.31	9.04	6.03	7.52
Merged-chr3-84615278-2	chr3	84615172	84615372	+	614.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21698.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0.0	1.51	3.42	2.41	2.45	8.15	4.98	5.41	10.82	3.51	12.06	7.83
Merged-chr11-117166618-2	chr11	117166513	117166713	+	614.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33048.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	11.71	7.8	10.27	10.05	11.86	7.53	2.33	5.44	9.64	7.53	7.03	4.7
Merged-chr11-83562482-2	chr11	83562376	83562576	+	614.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16160.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.06	3.77	10.27	11.26	7.36	7.53	4.65	4.96	12.19	3.51	7.03	4.7
Merged-chr7-19507567-3	chr7	19507449	19507649	+	614.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	782.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	9.69	2.52	9.7	3.22	11.05	8.15	3.99	6.56	5.11	8.54	12.06	6.89
Merged-chr2-27565524-2	chr2	27565421	27565621	+	614.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50374.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.85	6.04	9.7	6.84	10.64	11.29	9.3	5.41	3.74	8.54	5.53	3.76
Merged-chr4-152224387-1	chr4	152224287	152224487	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133348, intron 4 of 8)	intron (NM_133348, intron 4 of 8)	24543.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	3.63	1.51	0.0	4.42	0.82	5.64	6.98	5.36	10.03	2.01	5.02	1.57
Merged-chr11-107334689-1	chr11	107334589	107334789	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136031.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.81	0.5	3.42	1.21	6.95	3.45	4.32	5.52	6.49	0.5	4.02	4.7
Merged-chr16-55661814-1	chr16	55661714	55661914	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160324.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	1.21	5.03	0.57	3.22	5.73	6.9	1.0	6.22	4.33	4.02	7.54	3.45
Merged-chr10-127557572-1	chr10	127557472	127557672	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 48 of 88)	intron (NM_008512, intron 48 of 88)	-23013.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	8.48	5.53	5.7	4.02	4.09	4.7	6.98	4.49	4.13	3.01	12.56	4.7
Merged-chr13-119461941-1	chr13	119461841	119462041	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-818.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.81	3.27	1.71	2.01	4.91	5.33	2.99	7.4	4.33	6.53	5.53	8.77
Merged-chr1-88241740-1	chr1	88241640	88241840	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 19 of 41)	intron (NM_001281466, intron 19 of 41)	14720.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	6.46	1.51	3.42	3.22	7.36	4.08	0.33	6.53	2.16	4.52	2.01	5.95
Merged-chr18-6488376-2	chr18	6488276	6488476	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276350)	TTS (NM_001276350)	2270.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	4.85	9.31	1.14	0.8	4.91	10.98	6.64	4.93	11.41	9.04	8.54	7.52
Merged-chr19-20362363-1	chr19	20362263	20362463	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28308.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	1.62	1.51	1.14	7.24	6.95	7.84	2.66	5.78	8.46	8.03	9.55	3.76
Merged-chr11-114998236-1	chr11	114998136	114998336	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134158, exon 3 of 4)	exon (NM_134158, exon 3 of 4)	3644.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	4.04	1.01	1.14	0.0	5.73	8.15	4.32	3.62	8.46	4.52	4.52	2.82
Merged-chr10-42636990-3	chr10	42636896	42637096	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41920.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	5.65	7.29	7.99	2.01	7.77	3.14	4.98	5.64	7.47	1.51	9.04	4.39
Merged-chr2-70702543-1	chr2	70702443	70702643	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41034.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	4.85	13.08	5.13	6.84	4.09	9.41	7.31	5.44	3.74	2.51	6.03	7.21
Merged-chr17-67348010-3	chr17	67347895	67348095	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	6464.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.48	5.79	5.7	2.41	8.59	7.21	4.32	3.31	13.77	11.05	10.05	2.82
Merged-chr7-131800727-1	chr7	131800627	131800827	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165733.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.4	1.76	0.57	2.01	2.05	6.59	3.99	1.71	1.97	3.01	3.52	2.19
Merged-chr1-136637210-1	chr1	136637110	136637310	+	614.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	12309.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.23	6.04	12.55	2.41	8.59	1.88	2.99	3.56	11.6	7.03	9.55	7.52
Merged-chr4-109203375-2	chr4	109203277	109203477	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1105.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	14.13	9.06	15.97	9.25	5.73	4.39	3.32	8.52	4.72	1.0	5.53	10.34
Merged-chr17-5753234-3	chr17	5753126	5753326	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146073, exon 9 of 9)	3' UTR (NM_146073, exon 9 of 9)	-45431.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.65	8.05	9.7	4.02	6.55	5.96	6.31	5.72	9.44	10.54	7.54	5.64
Merged-chr16-17583277-2	chr16	17583139	17583339	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6349.0	NM_001359891	224022.0	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	8.08	6.29	2.85	1.61	0.82	6.59	4.98	4.37	1.57	2.51	6.03	2.19
Merged-chr4-62369305-1	chr4	62369205	62369405	+	614.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	8604.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0.0	3.77	2.28	4.83	8.18	2.82	4.32	6.7	10.62	6.03	8.04	5.33
Merged-chrX-12841064-1	chrX	12840964	12841164	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	78786.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	3.63	3.52	2.85	0.8	8.18	2.82	4.98	5.02	1.77	9.54	4.02	6.89
Merged-chr2-154187750-1	chr2	154187650	154187850	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3068.0	NM_001012392	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	2.42	0.25	3.42	1.21	8.59	7.21	5.31	5.36	2.95	6.03	6.03	3.45
Merged-chr5-5755245-2	chr5	5755144	5755344	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5927.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	7.27	5.28	2.85	4.83	5.32	5.33	1.33	9.95	4.72	4.02	2.01	0.94
Merged-chr3-31098033-1	chr3	31097933	31098133	+	614.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011386, exon 2 of 7)	exon (NM_011386, exon 2 of 7)	2975.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.63	6.29	0.57	4.42	1.23	7.53	3.99	3.08	9.05	10.04	8.04	8.14
Merged-chr17-88252103-1	chr17	88252003	88252203	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	126591.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	3.63	3.77	2.28	2.41	4.91	4.7	3.32	4.12	6.29	9.04	11.05	7.21
Merged-chr10-43954129-1	chr10	43954029	43954229	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172393, intron 19 of 19)	intron (NM_172393, intron 19 of 19)	50717.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.25	6.04	5.13	2.41	4.91	5.64	2.66	3.81	6.88	4.02	2.51	9.4
Merged-chr2-118746124-3	chr2	118746006	118746206	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301269, exon 1 of 1)	5' UTR (NM_001301269, exon 1 of 1)	348.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	4.44	10.56	10.84	12.47	5.32	6.27	5.65	9.2	5.31	13.56	8.04	9.71
Merged-chr4-155179226-3	chr4	155179126	155179326	+	614.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	43309.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.65	6.54	2.85	2.41	4.91	2.82	4.32	5.24	11.01	6.53	11.05	9.08
Merged-chr10-67290189-2	chr10	67290091	67290291	+	614.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4910.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.44	4.28	3.99	2.41	6.55	11.6	8.64	5.64	10.82	8.03	24.12	6.58
Merged-chr9-50499103-3	chr9	50498995	50499195	+	614.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029639, exon 2 of 4)	exon (NM_029639, exon 2 of 4)	4570.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	7.67	8.05	7.42	8.85	5.32	3.76	4.65	8.97	5.9	7.03	7.03	6.89
Merged-chr4-120501886-1	chr4	120501786	120501986	+	614.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355424, intron 7 of 14)	intron (NM_001355424, intron 7 of 14)	-30345.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.0	0.0	0.57	0.0	7.36	5.33	5.31	8.75	0.0	0.0	0.0	0.31
Merged-chr14-52100561-3	chr14	52100357	52100557	+	614.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	3564.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	6.06	3.27	4.56	4.02	2.45	5.33	4.65	4.01	2.56	11.55	5.02	5.01
Merged-chr18-61121487-1	chr18	61121387	61121587	+	614.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	4019.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	2.83	2.52	3.42	5.63	9.82	6.9	4.98	4.74	6.69	10.04	7.03	8.14
Merged-chr4-124675263-3	chr4	124675244	124675444	+	614.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	17698.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	5.25	7.04	7.42	5.63	4.91	4.7	2.66	3.53	6.29	3.51	3.52	3.76
Merged-chr18-74823718-2	chr18	74823616	74823816	+	614.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44504.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	8.48	5.28	9.13	2.01	7.77	3.14	4.32	6.06	6.1	7.03	9.04	7.83
Merged-chr1-165655263-2	chr1	165655226	165655426	+	614.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178593, exon 6 of 7)	exon (NM_178593, exon 6 of 7)	-20785.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	1.62	0.75	6.28	1.61	9.0	4.7	8.64	3.25	7.47	6.53	9.04	5.33
Merged-chr4-148657857-3	chr4	148657757	148657957	+	614.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	14540.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	8.48	7.04	5.7	3.22	6.14	4.08	2.33	5.78	8.85	11.55	13.57	15.66
Merged-chr5-141005624-1	chr5	141005524	141005724	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5028.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.65	8.05	10.27	2.41	5.32	6.9	1.66	2.94	8.65	2.51	7.03	4.39
Merged-chr2-145786163-1	chr2	145786063	145786263	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	47.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	2.83	2.52	3.42	4.02	9.82	2.2	3.65	5.61	3.34	6.03	2.51	0.63
Merged-chr10-130229816-1	chr10	130229716	130229916	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-18688.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0.81	6.54	6.28	4.83	4.91	3.14	4.98	6.14	5.9	6.03	5.53	3.45
Merged-chr2-128466803-1	chr2	128466703	128466903	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37452.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.63	4.02	0.57	0.8	2.45	0.63	0.66	0.7	7.08	11.55	1.51	7.52
Merged-chr9-63133290-1	chr9	63133190	63133390	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	13690.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.23	4.28	4.56	3.22	4.09	4.7	0.33	0.84	6.69	4.52	10.05	5.33
Merged-chr15-100102330-3	chr15	100102223	100102423	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	-52073.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.65	5.03	10.27	11.66	4.91	5.96	5.31	5.44	7.08	0.5	14.07	10.02
Merged-chr3-62497279-1	chr3	62497179	62497379	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028136, intron 4 of 24)	MER2|DNA|TcMar-Tigger	9709.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.04	2.26	6.85	9.25	0.82	3.45	4.32	3.11	12.59	6.03	11.05	5.33
Merged-chr7-136294603-1	chr7	136294503	136294703	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	26279.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.81	3.27	4.56	3.62	1.64	9.72	2.99	4.4	8.26	15.06	15.07	2.51
Merged-chr3-52011461-1	chr3	52011361	52011561	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	93545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.06	11.32	7.42	4.02	4.5	10.03	0.66	4.77	7.67	15.57	7.54	3.76
Merged-chr7-80781666-1	chr7	80781566	80781766	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	21665.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.88	1.01	3.42	1.21	2.86	8.15	6.64	4.88	5.31	6.53	3.52	1.57
Merged-chr11-65795003-1	chr11	65794903	65795103	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-6644.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	6.46	6.04	13.69	6.03	6.55	3.45	2.99	4.82	10.03	5.02	3.52	2.82
Merged-chr17-10771440-1	chr17	10771340	10771540	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	68751.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.81	0.0	0.0	0.0	9.41	1.88	5.65	5.38	0.2	0.0	2.51	4.7
Merged-chr10-100148296-1	chr10	100148196	100148396	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132475.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.63	3.27	5.13	7.64	4.91	3.76	2.99	4.51	9.64	12.05	7.54	4.7
Merged-chr1-82832708-1	chr1	82832608	82832808	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6752.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	1.62	3.27	1.14	0.0	5.73	3.76	2.66	0.34	11.01	1.51	9.04	5.01
Merged-chr3-79673210-1	chr3	79673110	79673310	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212452, intron 5 of 17)	(CAAA)n|Simple_repeat|Simple_repeat	44131.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	4.44	1.51	0.0	4.02	0.82	6.27	2.99	6.0	2.36	3.51	2.51	2.82
Merged-chr2-24346423-1	chr2	24346323	24346523	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039701, intron 1 of 3)	intron (NM_001039701, intron 1 of 3)	1052.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	7.67	1.76	2.28	1.21	10.23	9.09	2.33	4.79	8.65	5.52	3.52	4.7
Merged-chr9-64013716-1	chr9	64013616	64013816	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	8343.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	6.86	4.02	3.99	2.41	6.14	3.45	4.98	10.68	8.46	3.51	12.06	9.71
Merged-chr7-39448945-1	chr7	39448845	39449045	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-573.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	5.65	1.01	2.85	5.63	4.91	6.27	4.65	5.36	0.59	1.51	1.0	0.94
Merged-chr14-106193327-2	chr14	106193219	106193419	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	87121.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	6.86	3.77	9.13	6.03	4.91	7.53	4.65	3.25	2.75	4.02	7.54	0.94
Merged-chr2-145744324-1	chr2	145744224	145744424	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41792.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	2.02	3.02	0.0	3.22	6.55	2.51	4.98	5.1	1.77	6.53	1.51	1.25
Merged-chr14-120572474-1	chr14	120572374	120572574	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94013.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.81	3.02	5.7	4.02	5.73	2.2	5.31	5.33	1.57	4.02	4.02	1.25
Merged-chr3-108786745-1	chr3	108786645	108786845	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47087.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	6.46	5.28	4.56	8.85	4.5	13.48	4.98	5.38	7.67	10.04	7.54	6.89
Merged-chr19-58087266-1	chr19	58087166	58087366	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	RLTR45|LTR|ERVK	36099.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	3.23	1.51	2.28	4.02	6.55	11.29	7.31	1.91	2.75	5.52	1.0	0.0
Merged-chr4-138001875-1	chr4	138001775	138001975	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	4050.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.0	1.76	0.0	0.4	2.05	1.88	0.0	0.17	4.33	11.05	8.54	9.4
Merged-chr10-127479216-2	chr10	127479133	127479333	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-22453.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	11.71	9.06	3.99	1.61	5.32	4.39	3.32	2.1	7.47	5.52	14.07	6.58
Merged-chr13-97219659-1	chr13	97219559	97219759	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-21302.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	2.42	2.77	6.28	5.63	10.64	3.14	3.99	4.71	7.87	5.52	13.57	4.7
Merged-chrX-146946602-1	chrX	146946502	146946702	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15911.0	NM_008312	15560.0	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	1.21	2.01	1.14	3.62	2.05	1.57	5.98	4.85	1.77	1.0	2.51	2.51
Merged-chr10-88054880-1	chr10	88054780	88054980	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36192.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	10.09	5.03	1.71	6.03	2.05	5.64	3.99	5.1	4.92	5.52	5.02	1.88
Merged-chr4-106805084-1	chr4	106804984	106805184	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001347159)	promoter-TSS (NM_001347159)	-77.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	9.69	6.54	4.56	8.45	4.91	13.48	1.66	2.92	3.93	5.02	14.07	6.89
Merged-chr11-117109345-1	chr11	117109245	117109445	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5827.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	1.21	1.76	1.71	3.22	9.82	8.15	2.99	3.84	4.52	6.03	5.02	1.25
Merged-chr7-83483208-1	chr7	83483108	83483308	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101723.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	11.71	2.77	6.85	2.41	3.27	3.45	4.32	7.96	5.11	5.02	8.04	2.19
Merged-chr2-59340259-1	chr2	59340159	59340359	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46423.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	3.52	0.57	3.22	3.68	5.96	0.33	4.99	7.28	2.01	2.01	1.88
Merged-chr10-75838097-1	chr10	75837997	75838197	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3216.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	4.04	2.77	1.71	7.24	2.86	5.64	1.0	3.98	3.93	5.52	3.01	3.13
Merged-chr3-13561130-1	chr3	13561030	13561230	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	88331.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	2.02	2.77	3.42	5.63	4.91	3.14	4.32	7.46	3.74	6.03	12.06	3.76
Merged-chr2-68982984-1	chr2	68982884	68983084	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	Lx8|LINE|L1	121543.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	2.42	3.52	2.28	4.42	3.27	6.27	1.99	3.53	9.64	10.54	4.02	3.76
Merged-chr7-131802195-1	chr7	131802095	131802295	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-164265.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	5.25	3.52	3.42	4.02	4.91	5.33	4.65	7.91	4.13	2.51	7.03	4.39
Merged-chr7-84212182-1	chr7	84212082	84212282	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60289.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.75	0.0	0.0	0.0	0.0	0.0	0.0	9.83	9.54	6.03	4.39
Merged-chr11-6402932-1	chr11	6402832	6403032	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005867, intron 15 of 18)	intron (NM_001005867, intron 15 of 18)	1302.0	NR_106109	102465759.0		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	6.46	5.53	2.28	2.82	5.32	3.14	4.98	4.12	5.51	4.52	11.56	0.94
Merged-chr6-38808447-1	chr6	38808347	38808547	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	28864.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	8.48	1.01	3.42	7.24	6.55	5.64	3.65	9.84	2.16	4.02	9.04	8.14
Merged-chr5-123610020-1	chr5	123609920	123610120	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359224, intron 15 of 18)	intron (NM_001359224, intron 15 of 18)	-37005.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	8.08	8.05	2.28	10.05	7.36	10.66	2.66	2.61	12.39	5.02	9.55	4.07
Merged-chr3-60611869-1	chr3	60611769	60611969	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 3 of 7)	(A)n|Simple_repeat|Simple_repeat	110690.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.04	3.52	2.28	0.8	2.05	0.63	1.99	0.81	2.75	6.53	0.5	4.39
Merged-chr16-78199521-1	chr16	78199421	78199621	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	55933.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	1.62	3.02	1.14	0.8	2.45	1.25	3.99	3.93	4.52	0.0	1.0	3.13
Merged-chr12-80110601-1	chr12	80110501	80110701	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	2412.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.63	8.3	7.42	5.23	6.14	3.14	1.33	1.15	8.65	8.54	4.52	2.82
Merged-chr7-16048881-1	chr7	16048781	16048981	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22964.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.25	2.01	13.12	3.62	9.82	2.2	8.97	5.38	3.74	5.52	7.54	8.77
Merged-chr6-50115959-1	chr6	50115859	50116059	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	5099.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.04	10.31	5.13	3.22	9.41	2.82	7.97	1.07	6.29	6.03	6.03	1.25
Merged-chr17-87596697-1	chr17	87596597	87596797	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-39282.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	3.63	1.26	4.56	4.42	2.05	11.92	8.3	3.11	0.79	1.0	1.0	0.0
Merged-chr6-108428584-1	chr6	108428484	108428684	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-61159.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	3.02	10.27	2.41	4.09	1.57	4.65	5.07	2.75	3.01	4.02	4.07
Merged-chr13-100401996-1	chr13	100401896	100402096	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	50868.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	3.23	7.04	6.85	6.44	5.73	23.83	9.63	3.36	11.6	16.57	5.53	1.25
Merged-chr11-105944271-1	chr11	105944171	105944371	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007805, exon 1 of 6)	5' UTR (NM_007805, exon 1 of 6)	216.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	4.44	7.29	0.57	5.23	2.05	6.27	4.65	2.07	10.23	5.52	4.02	6.27
Merged-chr2-19308628-1	chr2	19308528	19308728	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081083, intron 19 of 19)	intron (NM_001081083, intron 19 of 19)	-35689.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	1.62	7.8	10.27	5.23	1.64	5.02	2.99	5.1	4.52	1.51	10.05	5.95
Merged-chr4-134586302-1	chr4	134586202	134586402	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-18451.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	1.51	0.0	0.0	17.59	7.53	0.33	5.1	3.54	5.02	14.57	2.19
Merged-chr12-44276121-1	chr12	44276021	44276221	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026164, intron 1 of 9)	L1MA4|LINE|L1	6967.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	2.42	10.31	1.71	1.61	2.45	3.45	3.65	3.0	15.14	9.04	7.54	7.83
Merged-chr9-106411348-1	chr9	106411248	106411448	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18063.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	6.86	4.28	10.27	7.24	6.55	4.08	3.65	8.8	6.29	8.54	7.54	1.25
Merged-chrX-140490754-1	chrX	140490654	140490854	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	34151.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	2.42	2.01	0.0	0.8	2.05	5.64	5.65	5.8	4.33	9.54	10.05	5.01
Merged-chr2-48886226-2	chr2	48886144	48886344	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007396, intron 4 of 10)	intron (NM_007396, intron 4 of 10)	63023.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	2.02	1.01	1.14	6.44	9.41	6.27	1.99	4.71	5.9	11.05	13.57	8.14
Merged-chr5-101786126-1	chr5	101786026	101786226	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173370, intron 2 of 12)	intron (NM_173370, intron 2 of 12)	20996.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.04	5.28	3.99	6.03	6.14	2.51	2.66	6.59	10.82	1.0	6.03	4.07
Merged-chr10-14960072-1	chr10	14959972	14960172	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	199783.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.81	1.01	2.28	2.41	1.23	5.64	2.33	7.32	3.54	1.0	8.04	4.07
Merged-chr3-116450913-3	chr3	116450810	116451010	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26878.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	8.88	5.03	2.28	7.64	4.5	6.27	11.29	6.03	7.67	8.03	26.63	5.95
Merged-chr10-68301180-3	chr10	68301090	68301290	+	613.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19952.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	4.04	9.31	4.56	4.42	4.91	4.7	1.99	5.1	4.72	13.05	12.06	7.21
Merged-chr7-136489194-2	chr7	136489095	136489295	+	613.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139780.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	3.23	2.52	3.42	1.61	2.45	7.21	2.66	6.84	9.05	8.54	11.05	2.51
Merged-chr17-40877798-2	chr17	40877697	40877897	+	613.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	2761.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	8.08	9.81	6.28	4.83	2.86	1.57	1.99	1.68	9.24	10.54	16.58	3.45
Merged-chr7-128320616-2	chr7	128320518	128320718	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22487.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	8.88	4.53	7.99	2.82	7.36	12.54	3.99	4.74	11.21	8.54	12.56	4.39
Merged-chr18-61746990-1	chr18	61746890	61747090	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178928, intron 8 of 18)	intron (NM_178928, intron 8 of 18)	20600.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	5.65	4.78	1.14	5.23	9.0	9.09	3.65	5.19	6.49	9.04	14.57	5.33
Merged-chr3-78948358-2	chr3	78948252	78948452	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196535.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.42	6.04	6.85	3.22	2.45	5.33	10.3	5.83	9.83	3.01	8.04	7.83
Merged-chr11-106819118-1	chr11	106819018	106819218	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025481)	TTS (NM_025481)	29866.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	3.23	4.78	6.28	0.8	7.77	9.09	3.99	3.79	5.7	3.01	2.51	3.45
Merged-chr2-22986503-1	chr2	22986403	22986603	+	613.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077190, intron 2 of 10)	intron (NM_001077190, intron 2 of 10)	53738.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.04	2.26	1.71	0.8	9.0	5.02	4.98	7.35	3.93	0.5	1.51	7.52
Merged-chr2-31087219-1	chr2	31087119	31087319	+	613.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	9281.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	8.08	1.76	1.14	4.83	3.68	4.08	4.32	6.17	7.08	4.02	6.03	3.45
Merged-chr8-68908630-1	chr8	68908530	68908730	+	613.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28075.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	2.42	2.52	1.14	5.23	5.73	5.64	5.31	5.94	3.74	4.52	8.04	4.39
Merged-chr19-3850985-2	chr19	3850875	3851075	+	613.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-798.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	8.08	8.8	9.13	2.01	8.59	7.53	2.33	5.19	5.31	3.01	5.53	7.21
Merged-chr11-50364740-3	chr11	50364642	50364842	+	613.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6863.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	9.69	9.56	3.42	7.64	12.68	7.84	5.31	6.9	9.05	11.05	12.56	7.52
Merged-chr12-98212621-2	chr12	98212511	98212711	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008079, intron 14 of 16)	L1_Mus3|LINE|L1	46848.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	2.83	6.04	7.99	2.82	0.82	7.53	4.65	5.21	4.13	13.05	4.52	7.52
Merged-chr11-108343165-2	chr11	108343039	108343239	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 1 of 16)	CpG	749.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.65	6.79	2.28	6.44	6.14	3.45	9.3	2.72	4.72	0.0	3.01	2.51
Merged-chr6-115491432-2	chr6	115491346	115491546	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-53258.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	4.04	2.01	5.7	4.02	9.41	3.76	5.31	2.97	6.49	14.56	7.03	13.16
Merged-chr18-88847551-1	chr18	88847451	88847651	+	613.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46656.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.23	3.52	5.13	12.47	2.45	1.25	4.65	7.68	15.14	6.53	9.04	5.95
Merged-chr19-12572821-1	chr19	12572721	12572921	+	613.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-689.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	1.62	4.28	3.42	0.8	3.68	4.08	5.31	0.48	11.01	10.54	10.55	6.27
Merged-chr9-56947651-2	chr9	56947569	56947769	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3255.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	9.29	4.78	3.99	10.05	5.73	10.35	1.99	3.22	15.54	4.52	6.53	7.21
Merged-chr4-141287176-1	chr4	141287076	141287276	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8737.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.81	0.75	2.85	7.24	3.27	5.96	4.98	5.5	3.15	0.5	2.51	2.51
Merged-chr8-106575984-2	chr8	106575883	106576083	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11160.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	11.31	7.8	13.12	3.22	2.45	6.27	4.65	10.6	8.65	7.53	12.56	6.27
Merged-chr2-166537079-1	chr2	166536979	166537179	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27443.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.81	5.53	2.85	5.23	9.41	1.88	2.99	6.39	5.11	0.5	13.06	4.7
Merged-chr17-91390421-1	chr17	91390321	91390521	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-297619.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	3.23	4.28	6.85	4.83	11.05	8.47	5.31	3.31	2.16	3.01	2.01	1.88
Merged-chr6-58832802-2	chr6	58832716	58832916	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028705)	promoter-TSS (NM_028705)	-884.0	NM_028705	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	7.27	3.27	2.85	1.61	4.5	5.02	3.99	4.57	9.44	10.04	2.01	5.33
Merged-chr2-138258577-2	chr2	138258475	138258675	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1991.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	10.5	16.6	11.41	2.82	7.36	6.27	2.33	5.52	10.82	3.01	11.05	3.13
Merged-chr14-59185993-1	chr14	59185893	59186093	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7244.0	NM_001004158	380907.0	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	8.08	5.79	4.56	6.03	2.45	6.9	1.66	2.78	5.7	5.52	8.04	6.58
Merged-chr13-85207728-1	chr13	85207628	85207828	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023243, intron 6 of 8)	intron (NM_023243, intron 6 of 8)	18343.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	6.06	7.8	2.28	2.41	4.91	7.53	4.65	4.63	7.08	3.01	9.04	6.58
Merged-chr11-95586389-1	chr11	95586289	95586489	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033217, intron 1 of 5)	CpG	1309.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	6.46	11.32	4.56	7.24	2.05	2.82	0.66	2.72	0.59	4.52	3.01	7.83
Merged-chrX-96122118-2	chrX	96122025	96122225	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	26080.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	3.63	3.02	2.28	0.0	7.77	14.11	6.31	5.83	5.7	20.08	11.56	8.46
Merged-chr6-65453689-1	chr6	65453589	65453789	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175524, intron 4 of 5)	intron (NM_175524, intron 4 of 5)	72395.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	7.67	2.26	1.14	7.24	9.41	3.14	4.98	4.4	6.88	4.02	6.03	1.88
Merged-chr6-149101556-2	chr6	149101456	149101656	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177192, exon 1 of 21)	5' UTR (NM_177192, exon 1 of 21)	124.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	5.25	3.52	3.99	7.24	2.86	5.33	7.97	8.13	8.26	3.51	10.55	6.58
Merged-chr19-25006888-3	chr19	25006788	25006988	+	613.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	7359.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	8.08	6.54	3.42	3.62	5.32	2.51	4.65	12.2	11.21	5.52	8.04	5.33
Merged-chr19-53399286-1	chr19	53399186	53399386	+	613.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8652.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.42	3.52	3.99	6.44	5.73	2.51	1.99	2.92	4.52	5.02	9.04	4.7
Merged-chr6-117825593-2	chr6	117825493	117825693	+	613.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91B|DNA|hAT-Tip100	-15588.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	12.11	3.77	1.14	2.82	4.91	7.53	2.33	7.82	9.05	8.54	21.1	7.83
Merged-chr3-84654267-2	chr3	84654158	84654358	+	613.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11934.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.04	7.29	5.7	5.63	2.86	6.59	5.98	5.97	5.7	10.04	13.06	7.21
Merged-chr10-7727230-2	chr10	7727132	7727332	+	613.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	1232.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	6.46	7.29	9.13	8.45	6.14	5.02	4.65	5.94	7.87	0.0	8.04	8.14
Merged-chr11-101589570-2	chr11	101589479	101589679	+	613.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359325, intron 6 of 7)	intron (NM_001359325, intron 6 of 7)	7280.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	8.88	8.05	2.28	10.86	11.05	5.64	3.65	5.05	12.19	8.03	7.54	4.7
Merged-chr3-119764004-3	chr3	119763902	119764102	+	613.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	19386.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	7.67	5.79	7.99	9.25	9.0	6.59	3.32	14.94	8.26	6.53	9.04	9.71
Merged-chr4-130087502-1	chr4	130087402	130087602	+	613.200012	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028266, intron 55 of 69)	intron (NM_028266, intron 55 of 69)	-20054.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	10.09	8.3	8.56	9.65	4.5	2.51	1.66	5.5	4.13	12.05	6.03	4.07
Merged-chr19-46044510-3	chr19	46044421	46044621	+	613.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	790.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	6.46	7.29	10.27	6.44	9.82	7.21	3.99	5.55	8.26	11.55	8.04	3.45
Merged-chr14-8092704-3	chr14	8092589	8092789	+	613.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001348727)	TTS (NM_001348727)	-5522.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	10.09	6.29	10.27	1.61	5.73	4.39	1.99	5.66	9.64	8.03	9.55	2.19
Merged-chr7-45305480-2	chr7	45305368	45305568	+	613.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175130, exon 21 of 25)	exon (NM_175130, exon 21 of 25)	-19490.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	6.46	5.79	2.28	6.84	6.14	8.15	4.65	4.18	7.47	10.04	9.55	10.65
Merged-chr15-50997298-2	chr15	50997192	50997392	+	613.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107251.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.65	2.52	7.42	3.62	1.64	2.51	3.32	6.03	3.34	12.05	13.57	7.83
Merged-chr10-127318235-2	chr10	127318138	127318338	+	613.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3726.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	5.65	7.04	1.14	8.04	5.32	6.9	6.31	7.37	5.7	8.54	6.03	8.14
Merged-chr1-191733992-3	chr1	191733906	191734106	+	613.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	15611.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	6.06	7.04	9.13	9.65	5.73	8.15	4.65	10.51	7.08	1.0	10.05	8.77
Merged-chr2-164834627-3	chr2	164834494	164834694	+	613.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082974)	promoter-TSS (NM_001082974)	821.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	8.08	7.04	6.28	5.63	5.32	3.14	9.63	7.77	8.26	10.54	10.55	7.21
Merged-chr10-18049730-1	chr10	18049630	18049830	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6210.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	8.88	2.01	2.85	4.42	6.55	3.14	3.65	4.68	1.77	1.0	5.02	3.13
Merged-chr10-4405122-2	chr10	4405025	4405225	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358796, intron 12 of 13)	intron (NM_001358796, intron 12 of 13)	-17017.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	2.83	5.03	0.0	9.25	2.86	10.98	4.65	5.8	6.49	12.55	13.57	5.64
Merged-chr11-83443045-1	chr11	83442945	83443145	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080453, intron 7 of 7)	intron (NM_080453, intron 7 of 7)	5351.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	7.67	9.81	5.13	6.84	7.36	13.48	1.99	4.15	6.69	5.02	5.53	3.45
Merged-chr16-21335936-2	chr16	21335827	21336027	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2571.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	4.04	4.02	2.28	2.82	6.95	3.14	2.66	5.36	8.06	6.03	7.54	5.95
Merged-chr19-42537844-2	chr19	42537747	42537947	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	19042.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	4.85	7.8	9.13	3.22	4.91	11.29	1.0	1.99	10.82	8.54	1.51	2.51
Merged-chrX-99214384-1	chrX	99214284	99214484	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	78323.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	7.67	7.29	6.85	1.61	4.09	6.59	5.65	3.5	4.33	3.51	9.55	2.82
Merged-chr9-99130639-2	chr9	99130526	99130726	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	9585.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.67	3.77	2.28	1.61	6.95	8.15	3.99	5.3	7.67	4.02	9.55	5.64
Merged-chr7-104216383-1	chr7	104216283	104216483	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2412.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	1.21	3.27	0.57	1.61	3.27	4.7	7.97	5.5	7.47	4.02	5.53	5.95
Merged-chr3-133546503-1	chr3	133546403	133546603	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2113.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	2.83	3.27	1.14	1.61	6.55	5.02	1.0	0.81	6.29	2.01	14.57	7.21
Merged-chr15-74674547-1	chr15	74674447	74674647	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1977.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	2.42	3.52	2.85	7.24	2.86	6.59	3.32	7.54	5.31	3.01	1.0	4.7
Merged-chr1-34004540-1	chr1	34004440	34004640	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-7285.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	1.21	2.01	8.56	2.41	0.0	1.25	4.98	6.39	4.33	4.02	1.51	2.19
Merged-chr8-120752113-1	chr8	120752013	120752213	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	13474.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	1.26	1.14	2.41	4.09	1.88	1.33	5.92	2.95	0.0	1.51	2.51
Merged-chr11-98789969-1	chr11	98789869	98790069	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5547.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	2.83	4.02	12.55	8.45	8.18	5.33	4.98	2.16	11.41	7.53	3.52	3.76
Merged-chr11-30025112-1	chr11	30025012	30025212	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 1 of 41)	intron (NM_146016, intron 1 of 41)	921.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	1.21	2.52	0.0	2.01	5.32	3.14	2.33	3.95	9.44	3.01	7.03	6.58
Merged-chr16-17292991-1	chr16	17292891	17293091	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001983, intron 41 of 54)	intron (NM_001001983, intron 41 of 54)	16691.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.81	1.51	3.99	3.62	2.05	4.39	1.66	7.21	9.05	4.02	5.02	2.19
Merged-chr11-107147497-2	chr11	107147392	107147592	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9916.0	NM_001308498	105734734.0		NM_001308498		Gm11715	-	predicted gene 11715	protein-coding	6.86	7.04	10.27	13.27	6.95	6.59	4.98	3.73	3.34	6.53	10.55	1.57
Merged-chr8-57485231-1	chr8	57485131	57485331	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021788, intron 2 of 3)	intron (NM_021788, intron 2 of 3)	2629.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	2.83	3.27	4.56	1.21	7.36	2.51	2.66	4.85	2.36	2.51	5.02	2.82
Merged-chr5-43788140-1	chr5	43788040	43788240	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5991.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.85	10.06	11.98	2.01	8.18	10.66	5.65	2.8	3.74	15.06	9.55	1.57
Merged-chr9-25309988-1	chr9	25309888	25310088	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	57096.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	9.29	8.55	7.99	8.85	5.32	3.45	1.33	5.3	5.51	9.04	9.55	2.19
Merged-chr8-106017310-1	chr8	106017210	106017410	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-5824.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	0.0	3.02	1.14	2.41	2.86	5.96	1.99	5.33	3.15	3.01	7.03	5.64
Merged-chr7-98799921-1	chr7	98799821	98800021	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-35191.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.25	2.52	4.56	3.22	4.09	4.08	7.97	5.1	10.42	7.03	9.55	2.19
Merged-chr6-66893078-1	chr6	66892978	66893178	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3319.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	2.83	1.01	3.42	1.61	5.73	3.14	1.33	5.75	1.97	0.5	3.52	2.51
Merged-chr14-21973334-1	chr14	21973234	21973434	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	16267.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	5.65	6.04	9.13	1.61	1.64	0.63	6.98	6.14	11.01	6.53	9.55	4.07
Merged-chr3-126660431-1	chr3	126660331	126660531	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	63480.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.04	5.03	2.85	0.8	2.05	0.63	5.98	5.92	16.52	9.54	4.02	3.45
Merged-chr11-11455187-1	chr11	11455087	11455287	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015785, intron 2 of 7)	L1M4|LINE|L1	7232.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	4.44	4.02	0.0	0.4	3.27	1.88	5.98	3.9	3.74	2.01	3.52	2.51
Merged-chr10-22747798-1	chr10	22747698	22747898	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16351.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	2.42	3.27	0.0	4.02	2.05	0.94	5.31	5.61	0.2	6.53	4.02	1.57
Merged-chr2-28841866-2	chr2	28841765	28841965	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033294, intron 1 of 19)	intron (NM_001033294, intron 1 of 19)	1459.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	4.85	4.53	6.85	13.27	4.09	7.21	2.99	6.42	3.74	2.51	9.55	3.45
Merged-chr10-80174893-1	chr10	80174793	80174993	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027207, exon 3 of 3)	3' UTR (NM_027207, exon 3 of 3)	1949.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	5.65	5.03	5.13	3.22	5.32	2.2	3.65	4.63	10.03	4.52	6.03	5.95
Merged-chr11-77443864-1	chr11	77443764	77443964	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-20049.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.04	1.51	1.14	0.0	1.64	6.9	0.66	4.68	3.54	8.54	8.04	2.19
Merged-chr9-103175244-1	chr9	103175144	103175344	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	26821.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	1.62	2.52	2.85	0.8	2.05	2.2	2.99	4.51	6.49	5.52	11.05	10.65
Merged-chr1-85794590-2	chr1	85794422	85794622	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355047, intron 1 of 9)	intron (NM_001355047, intron 1 of 9)	505.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	4.44	6.04	3.99	2.41	4.09	5.64	7.97	4.21	8.06	3.51	2.51	5.01
Merged-chr5-124631834-1	chr5	124631734	124631934	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	2782.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	11.71	4.28	11.98	4.02	3.68	0.94	0.66	3.25	2.56	5.02	6.53	1.88
Merged-chr2-151632294-1	chr2	151632194	151632394	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291076, intron 1 of 5)	CpG-8656	299.0	NM_198214	241727.0	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	2.83	4.53	4.56	4.83	6.14	8.15	5.31	2.52	1.57	6.03	2.51	6.89
Merged-chr9-106322758-2	chr9	106322693	106322893	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	41732.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.63	4.28	6.85	8.45	6.55	5.33	2.99	4.04	3.34	5.02	9.04	3.76
Merged-chr13-112995759-2	chr13	112995658	112995858	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	1890.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	5.25	5.79	6.85	2.41	4.09	6.27	3.65	5.27	5.7	6.03	11.56	7.52
Merged-chr8-68002358-1	chr8	68002258	68002458	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27784.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.25	7.29	3.42	1.61	0.82	8.78	1.0	4.63	8.85	9.54	9.04	1.25
Merged-chr5-118246143-1	chr5	118246043	118246243	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081236, intron 1 of 4)	intron (NM_001081236, intron 1 of 4)	916.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	4.85	2.52	1.14	1.61	1.64	1.25	5.65	3.98	3.54	7.03	4.02	2.82
Merged-chr1-173802791-1	chr1	173802691	173802891	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35872.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	4.85	4.02	0.0	8.45	1.64	0.63	2.66	0.56	9.05	8.54	11.56	6.89
Merged-chr7-89126683-1	chr7	89126583	89126783	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212104.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	7.27	5.03	2.85	4.02	1.64	5.64	2.66	3.98	4.72	1.0	4.02	5.33
Merged-chr2-18916133-2	chr2	18916043	18916243	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81978.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	2.83	11.82	10.27	6.84	13.09	2.51	3.32	4.96	5.7	2.51	2.51	1.57
Merged-chr3-103097823-1	chr3	103097723	103097923	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033303, intron 13 of 15)	intron (NM_001033303, intron 13 of 15)	23809.0	NM_001033303	229665.0	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	2.83	5.28	5.13	7.64	3.27	6.59	3.32	6.25	3.15	4.52	4.52	0.0
Merged-chr3-126652548-1	chr3	126652448	126652648	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	55597.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.46	5.53	5.7	1.21	6.55	14.74	3.99	3.81	9.44	12.55	10.55	4.7
Merged-chr6-53577209-1	chr6	53577109	53577309	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	3835.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.23	7.29	12.55	2.01	2.45	9.09	1.66	0.11	4.13	4.52	6.53	1.57
Merged-chr15-96821662-1	chr15	96821562	96821762	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-121934.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	1.62	3.77	9.13	12.87	0.41	1.57	7.97	5.07	2.75	0.0	2.51	4.39
Merged-chr3-142526999-1	chr3	142526899	142527099	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3337.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	5.65	6.79	0.0	2.41	0.82	2.82	1.66	3.31	8.26	3.01	5.02	7.52
Merged-chr11-110868518-1	chr11	110868418	110868618	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99515.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.4	2.01	2.28	5.63	2.45	7.21	3.65	5.64	1.97	2.01	9.04	0.63
Merged-chr10-93485164-1	chr10	93485064	93485264	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001313897)	TTS (NM_001313897)	-3604.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	6.86	7.55	19.4	8.45	10.23	1.57	4.32	5.86	4.33	3.51	6.03	6.89
Merged-chr15-88750801-1	chr15	88750701	88750901	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-910.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	1.62	5.28	3.42	5.23	2.86	3.45	0.0	2.33	10.62	5.02	3.52	7.21
Merged-chr4-131922376-1	chr4	131922276	131922476	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001201367, exon 1 of 1)	exon (NM_001201367, exon 1 of 1)	605.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	3.63	1.76	0.0	0.4	2.05	5.96	4.32	4.99	1.57	4.52	3.01	4.39
Merged-chr3-126629286-2	chr3	126629196	126629396	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32345.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	12.11	7.29	5.7	2.41	2.86	6.9	5.31	3.22	4.33	5.02	5.02	1.25
Merged-chr19-44895455-1	chr19	44895355	44895555	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35664.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	5.65	3.52	2.85	3.62	0.82	6.59	1.0	7.01	3.34	6.03	18.59	5.33
Merged-chr8-37927285-1	chr8	37927185	37927385	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	324917.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.4	0.5	0.0	0.4	0.0	0.31	0.66	1.65	7.87	7.53	10.55	9.08
Merged-chr13-13523685-1	chr13	13523585	13523785	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66724.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.23	3.02	2.28	0.0	0.82	4.39	0.66	4.07	6.69	5.52	7.03	3.45
Merged-chr3-106809486-1	chr3	106809386	106809586	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	13071.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	4.04	1.51	2.28	0.0	3.27	5.64	4.65	5.94	3.74	0.0	6.53	2.82
Merged-chr8-117613061-1	chr8	117612961	117613161	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 28 of 32)	intron (NM_172285, intron 28 of 32)	58486.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	1.62	2.26	1.14	1.61	0.41	3.14	0.66	0.34	0.98	1.51	12.06	7.52
Merged-chr4-132813703-1	chr4	132813603	132813803	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17339.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	11.31	6.04	1.71	2.41	8.59	4.08	3.32	5.55	8.46	4.52	5.02	0.94
Merged-chr1-166268537-1	chr1	166268437	166268637	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357432, intron 1 of 8)	intron (NM_001357432, intron 1 of 8)	14398.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	3.63	9.06	6.28	14.48	5.32	4.39	4.32	7.63	6.49	1.0	9.04	6.27
Merged-chr8-25975510-1	chr8	25975410	25975610	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 1 of 17)	B3|SINE|B2	1234.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	1.21	0.25	1.14	1.61	1.64	1.57	1.66	1.29	9.44	6.03	7.03	5.95
Merged-chr7-126236019-1	chr7	126235919	126236119	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131046, intron 2 of 4)	ID4_|SINE|ID	1585.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	4.04	1.01	2.28	4.02	6.55	0.63	1.0	4.71	1.18	4.02	4.52	2.82
Merged-chr13-100198913-1	chr13	100198813	100199013	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	3209.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	9.29	4.28	4.56	6.44	0.82	2.2	4.98	5.38	7.47	4.52	6.03	4.7
Merged-chr18-38978082-1	chr18	38977982	38978182	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15063.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.46	6.04	5.7	4.02	9.82	11.92	6.98	2.1	1.57	1.0	3.52	4.7
Merged-chr1-171344460-1	chr1	171344360	171344560	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360825)	promoter-TSS (NM_001360825)	-494.0	NM_001360825	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	4.44	2.26	3.42	4.83	1.64	6.27	2.66	4.49	1.77	3.51	3.01	4.7
Merged-chr6-28882532-1	chr6	28882432	28882632	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-50785.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	6.46	2.01	1.14	7.24	5.32	3.45	3.65	4.79	4.13	3.01	6.03	4.7
Merged-chr2-164432584-1	chr2	164432484	164432684	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	10604.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	9.29	7.8	3.99	3.62	0.0	7.21	1.66	0.73	2.56	1.0	0.0	0.31
Merged-chr9-107295707-1	chr9	107295607	107295807	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-952.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	3.23	5.03	4.56	3.22	9.0	5.33	1.99	2.1	17.11	9.54	6.53	2.82
Merged-chr4-116704019-2	chr4	116703914	116704114	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025962, intron 3 of 3)	B3|SINE|B2	4371.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	6.06	4.53	11.41	2.82	6.14	6.9	7.31	4.57	10.82	15.06	12.06	8.14
Merged-chr4-87668645-1	chr4	87668545	87668745	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137678.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.85	0.5	1.14	4.02	2.86	4.39	4.65	4.71	2.36	2.51	3.52	2.51
Merged-chrX-101132737-1	chrX	101132637	101132837	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110311, intron 4 of 5)	intron (NM_001110311, intron 4 of 5)	-47332.0	NM_007515	11989.0	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	2.83	2.77	2.28	5.23	2.86	7.53	5.31	4.01	5.31	8.03	1.51	4.07
Merged-chr11-59527556-1	chr11	59527456	59527656	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14013.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	2.83	3.52	4.56	2.01	2.05	4.39	7.97	3.59	7.08	2.01	8.04	5.95
Merged-chr4-62397739-1	chr4	62397639	62397839	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139291, intron 3 of 3)	intron (NM_139291, intron 3 of 3)	10884.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.81	1.01	0.0	6.84	7.77	8.78	1.33	5.16	1.77	1.0	6.03	4.07
Merged-chr10-42897786-1	chr10	42897686	42897886	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	37274.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	5.25	6.29	2.28	5.63	6.55	1.25	2.66	6.2	8.06	3.51	11.56	5.64
Merged-chr12-75836645-1	chr12	75836545	75836745	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	18327.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.23	3.02	0.0	1.61	5.32	3.14	1.0	5.41	2.75	4.02	5.53	2.19
Merged-chr8-105533504-1	chr8	105533404	105533604	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	14758.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	3.63	6.54	2.85	2.41	1.23	2.2	4.65	6.06	1.38	1.51	3.01	1.25
Merged-chr1-149971733-1	chr1	149971633	149971833	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-10443.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.46	5.53	11.41	9.25	4.91	3.76	0.33	7.32	8.46	2.51	9.55	1.25
Merged-chr8-108896671-1	chr8	108896571	108896771	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-40189.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.81	3.27	12.55	5.63	4.91	5.96	0.66	7.26	4.13	2.01	4.02	5.01
Merged-chr5-5421660-1	chr5	5421560	5421760	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41409.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.44	3.77	1.14	2.01	4.09	6.27	4.32	1.21	9.24	6.03	3.01	10.02
Merged-chr19-7441759-2	chr19	7441602	7441802	+	612.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	19129.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	3.63	2.26	7.99	4.42	6.14	3.76	2.66	3.7	2.36	9.04	3.52	6.27
Merged-chr18-32560033-2	chr18	32559923	32560123	+	612.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001048207)	promoter-TSS (NM_001048207)	11.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	8.08	7.29	10.84	7.64	5.73	7.84	1.99	4.37	0.39	2.51	1.51	1.25
Merged-chr10-81526957-3	chr10	81526863	81527063	+	612.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2738.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	8.88	3.52	3.99	6.03	6.95	10.03	5.31	6.67	8.06	12.05	9.55	4.39
Merged-chr5-5418496-2	chr5	5418402	5418602	+	612.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-38251.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	10.9	5.79	5.13	2.82	11.45	11.6	6.31	3.25	6.1	12.05	14.57	8.14
Merged-chr7-16042989-2	chr7	16042867	16043067	+	612.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28878.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	8.08	2.26	4.56	3.62	9.0	5.64	1.66	4.29	9.83	8.03	8.04	8.77
Merged-chr8-72539458-2	chr8	72539350	72539550	+	612.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027485, intron 1 of 2)	B3A|SINE|B2	8860.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	8.08	11.07	1.71	4.42	3.27	10.98	1.99	1.79	11.41	10.04	9.55	5.33
Merged-chr1-192742107-2	chr1	192742002	192742202	+	612.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	29117.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	8.88	7.04	9.13	4.83	0.82	0.31	0.0	1.21	9.64	11.05	7.54	4.39
Merged-chrX-61815084-1	chrX	61814984	61815184	+	612.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	105468.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	2.42	2.52	2.28	1.61	18.0	9.09	3.65	7.43	15.93	4.02	7.54	5.33
Merged-chr10-61382529-2	chr10	61382418	61382618	+	612.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1005.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	4.04	8.05	10.27	4.83	8.59	2.51	11.29	6.48	4.72	2.01	4.52	5.33
Merged-chr11-72564514-2	chr11	72564418	72564618	+	612.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14272.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	2.02	7.55	11.98	1.61	13.91	12.23	7.31	1.6	4.33	13.56	5.53	3.45
Merged-chr15-89158147-2	chr15	89158034	89158234	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159521, intron 31 of 37)	intron (NM_001159521, intron 31 of 37)	4774.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	4.44	3.52	5.7	5.63	3.27	3.45	2.33	5.61	8.06	8.03	7.54	3.13
Merged-chr2-4864582-2	chr2	4864481	4864681	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16983.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	8.08	4.28	1.14	5.63	4.91	4.39	4.98	3.93	9.24	10.54	5.53	9.08
Merged-chr2-32380247-1	chr2	32380147	32380347	+	612.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	1668.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	5.25	0.5	3.99	1.61	4.91	3.14	3.32	8.47	7.47	2.01	10.55	7.83
Merged-chr7-6152940-2	chr7	6152862	6153062	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3009.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	8.08	8.55	3.42	4.83	1.64	9.41	8.3	4.23	12.98	8.54	1.51	4.39
Merged-chr11-69037859-1	chr11	69037759	69037959	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Thr-ACY|tRNA|tRNA	-7778.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	7.27	4.28	6.85	4.02	8.18	6.27	2.33	4.96	2.75	4.02	5.02	4.07
Merged-chr5-8256601-1	chr5	8256501	8256701	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 3 of 28)	RLTR26_Mus|LTR|ERVK	111559.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	1.62	6.54	5.7	6.84	6.95	0.63	4.65	6.53	3.54	5.52	3.52	2.19
Merged-chr16-37651783-1	chr16	37651683	37651883	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	2585.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	5.25	3.52	6.28	1.61	7.77	5.64	3.65	5.33	3.93	2.51	5.02	4.39
Merged-chr1-188980293-3	chr1	188980194	188980394	+	612.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153196, intron 13 of 17)	intron (NR_153196, intron 13 of 17)	27546.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	2.02	1.76	7.42	9.65	4.09	6.9	3.65	6.42	8.85	13.05	11.56	4.7
Merged-chr1-172205879-2	chr1	172205776	172205976	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	928.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	3.23	4.53	5.7	2.41	8.18	13.17	0.33	4.99	8.06	5.52	6.53	5.95
Merged-chr8-110446830-1	chr8	110446730	110446930	+	612.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 20 of 86)	MTD|LTR|ERVL-MaLR	55526.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.5	0.0	0.0	1.64	0.63	0.33	0.11	10.42	9.04	16.08	5.33
Merged-chr13-60761772-1	chr13	60761672	60761872	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285917, exon 26 of 27)	exon (NM_001285917, exon 26 of 27)	24592.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.23	2.01	1.14	3.22	1.23	5.02	4.32	1.96	0.79	0.0	2.51	1.88
Merged-chr5-25246038-2	chr5	25245944	25246144	+	612.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359890)	promoter-TSS (NM_001359890)	-329.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	8.88	9.31	4.56	11.26	5.73	6.9	2.66	4.6	1.38	2.51	2.51	5.01
Merged-chr16-17406724-3	chr16	17406666	17406866	+	612.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001983)	promoter-TSS (NM_001001983)	-452.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	9.29	4.02	10.84	15.28	4.09	4.39	7.97	14.92	6.29	6.53	16.58	5.33
Merged-chr6-39539833-1	chr6	39539733	39539933	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	18001.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	2.42	3.02	4.56	2.01	5.32	5.96	5.31	5.44	2.75	3.51	10.55	1.57
Merged-chr1-105989013-3	chr1	105988909	105989109	+	612.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	1273.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.63	5.03	7.99	13.67	4.09	4.39	1.33	4.23	9.24	10.04	9.04	3.76
Merged-chr19-60837966-1	chr19	60837866	60838066	+	612.333313	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001362384, exon 15 of 15)	3' UTR (NM_001362384, exon 15 of 15)	23462.0	NM_001362385	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	6.46	8.55	10.27	15.28	0.82	0.0	0.0	1.04	3.54	13.05	5.53	6.58
Merged-chr15-35147045-1	chr15	35146945	35147145	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	8761.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	1.62	4.02	5.13	0.8	6.55	5.96	4.98	4.43	1.97	7.03	8.04	2.51
Merged-chrX-73999523-1	chrX	73999423	73999623	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24075.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	7.67	3.27	1.71	3.62	3.68	3.76	5.65	3.87	6.29	2.51	7.03	4.39
Merged-chr15-41639057-1	chr15	41638957	41639157	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149938.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.4	1.01	1.14	0.0	6.95	5.64	6.64	4.96	4.52	1.0	8.04	4.7
Merged-chr16-33080254-3	chr16	33080154	33080354	+	612.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	17733.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	5.65	9.06	4.56	6.84	7.36	2.82	9.3	5.89	10.82	10.04	14.57	4.39
Merged-chr9-44322387-1	chr9	44322287	44322487	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2105.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	5.65	2.77	11.41	0.0	5.32	5.64	5.65	5.72	9.24	4.52	14.57	2.51
Merged-chr8-71988662-2	chr8	71988549	71988749	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024444, exon 13 of 13)	exon (NM_024444, exon 13 of 13)	20977.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.63	6.54	9.13	6.44	5.32	4.39	6.64	5.94	6.88	10.54	13.57	13.78
Merged-chr11-4236802-1	chr11	4236702	4236902	+	612.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	17.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.81	1.51	2.28	0.0	8.18	2.2	6.64	5.58	2.16	2.01	1.0	0.94
Merged-chr9-108847758-2	chr9	108847678	108847878	+	612.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-6265.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	5.65	8.3	12.55	5.23	6.14	18.81	12.29	5.8	10.03	12.55	18.59	5.33
Merged-chr9-66344823-2	chr9	66344722	66344922	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5628.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.85	9.06	12.55	6.03	13.91	11.92	5.98	5.38	5.51	4.02	2.51	6.89
Merged-chr7-145034230-2	chr7	145034113	145034313	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR9D|LTR|ERVK	-94288.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.48	4.02	9.13	10.05	7.77	5.96	0.33	6.28	7.87	7.03	6.03	5.95
Merged-chr19-47650998-2	chr19	47650891	47651091	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007732, intron 45 of 52)	intron (NM_007732, intron 45 of 52)	41051.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	6.86	9.31	6.85	2.41	6.55	6.59	8.97	0.73	6.49	0.5	3.52	0.63
Merged-chr13-19430093-2	chr13	19430008	19430208	+	612.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34295.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	3.23	2.01	5.7	3.22	3.27	12.54	4.65	4.96	7.67	19.08	9.55	7.83
Merged-chr8-33654696-2	chr8	33654621	33654821	+	612.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	L2c|LINE|L2	1483.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.25	1.76	1.71	2.82	2.45	6.27	2.33	7.4	10.62	6.53	10.05	7.52
Merged-chr7-35649297-2	chr7	35649207	35649407	+	612.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1825.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	7.67	3.27	1.14	1.61	8.59	13.48	4.65	3.64	8.26	5.52	11.56	7.21
Merged-chr13-108214333-2	chr13	108214227	108214427	+	612.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029001)	promoter-TSS (NM_029001)	-77.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	6.46	5.03	6.28	3.62	6.95	6.59	4.65	5.8	6.88	7.53	8.54	3.76
Merged-chr2-178507532-1	chr2	178507432	178507632	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77017.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	6.86	3.52	0.0	2.01	1.23	3.45	1.66	2.89	3.74	2.01	4.02	3.76
Merged-chr15-74594237-1	chr15	74594137	74594337	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42081.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	4.44	2.52	2.85	2.82	6.14	1.88	4.98	5.05	1.77	1.51	5.02	5.01
Merged-chr11-83704950-2	chr11	83704848	83705048	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	892.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	3.63	3.52	6.85	3.22	2.05	5.64	2.66	4.68	5.31	3.01	7.03	7.83
Merged-chr9-3005932-1	chr9	3005832	3006032	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	32811.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	14.13	9.31	10.27	12.07	18.82	6.9	16.61	8.33	12.39	10.54	13.57	15.66
Merged-chr5-80953110-1	chr5	80953010	80953210	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67461.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.42	2.77	7.99	10.46	3.68	0.0	5.65	5.02	5.31	6.53	10.05	5.95
Merged-chr11-54072798-2	chr11	54072711	54072911	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3794.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	5.65	2.01	3.99	1.21	7.36	10.03	0.33	3.76	7.47	12.05	8.54	7.52
Merged-chr11-115705758-2	chr11	115705637	115705837	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	2860.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.27	3.02	1.71	4.42	4.5	5.96	0.66	5.89	9.44	5.52	6.03	4.07
Merged-chr18-60736834-1	chr18	60736734	60736934	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-3693.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.21	1.01	2.28	2.41	7.36	8.78	1.66	4.82	0.98	2.01	3.01	4.7
Merged-chr18-4842772-1	chr18	4842672	4842872	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	30286.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.81	1.76	2.28	2.01	0.82	3.14	3.99	6.25	3.93	2.01	2.51	0.94
Merged-chr13-49147502-1	chr13	49147402	49147602	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 1 of 29)	CpG-3837	826.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	2.42	1.76	1.14	0.8	0.82	0.63	6.98	6.81	0.98	1.51	2.51	6.27
Merged-chr19-12465318-1	chr19	12465218	12465418	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010821)	TTS (NM_010821)	4539.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.85	6.79	1.71	0.8	9.41	6.9	5.31	3.36	2.36	1.51	3.01	3.13
Merged-chr3-146451557-1	chr3	146451457	146451657	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028836, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	1090.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	4.44	3.52	5.7	0.0	4.91	2.82	4.32	4.54	8.06	5.52	12.06	5.33
Merged-chr18-77821514-1	chr18	77821414	77821614	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25124.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	5.25	3.77	2.28	2.41	5.73	8.15	3.99	4.15	7.28	2.01	4.02	2.82
Merged-chr5-123436956-1	chr5	123436856	123437056	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	42158.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.25	4.78	3.42	4.83	4.91	8.15	3.32	2.5	12.98	10.04	1.51	3.13
Merged-chr13-105224190-2	chr13	105224091	105224291	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	68823.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.46	19.62	3.99	7.64	7.77	1.88	5.31	4.74	5.9	6.53	7.03	6.27
Merged-chr2-157259916-1	chr2	157259816	157260016	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039557, intron 4 of 24)	intron (NM_001039557, intron 4 of 24)	-19182.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	1.62	2.01	1.14	0.4	6.95	2.2	1.33	1.65	10.42	9.04	5.02	5.33
Merged-chr12-33119206-1	chr12	33119106	33119306	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015602, exon 5 of 6)	non-coding (NR_015602, exon 5 of 6)	-26331.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	2.02	5.03	2.28	1.61	6.55	2.82	4.65	4.96	4.72	3.01	3.52	1.88
Merged-chr9-66127289-1	chr9	66127189	66127389	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	678.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	4.04	3.77	5.7	5.63	0.82	5.96	2.99	4.46	5.9	6.03	3.01	4.07
Merged-chr4-32574714-1	chr4	32574614	32574814	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 3 of 4)	B3|SINE|B2	-3052.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.23	3.52	3.99	0.8	2.86	2.51	4.32	7.51	6.29	7.53	6.53	5.01
Merged-chr15-66980055-1	chr15	66979955	66980155	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10414.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.81	1.26	7.99	2.41	5.73	3.45	1.33	4.6	5.11	2.01	17.08	0.63
Merged-chr2-45099959-1	chr2	45099859	45100059	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10318.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.83	2.26	0.0	0.8	6.95	7.84	7.64	3.48	2.75	3.01	1.51	1.88
Merged-chr15-87909298-1	chr15	87909198	87909398	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113355.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0.0	0.0	2.28	0.0	2.45	2.2	5.31	5.02	0.0	1.51	0.0	0.0
Merged-chr5-124446729-1	chr5	124446629	124446829	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	25.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	2.42	1.01	0.57	7.24	2.45	1.57	5.31	5.19	5.7	3.51	6.03	2.82
Merged-chr5-31290680-1	chr5	31290580	31290780	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	434.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	5.25	1.51	1.71	4.42	5.73	5.33	5.31	4.63	3.93	10.54	4.02	6.58
Merged-chr3-107998285-1	chr3	107998185	107998385	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-11865.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0.81	0.5	2.28	4.02	1.23	1.25	5.31	6.25	5.31	3.01	5.53	1.88
Merged-chr12-85615736-1	chr12	85615636	85615836	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	15718.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.4	3.27	0.0	0.0	5.73	5.64	2.33	4.65	6.88	7.53	2.01	4.07
Merged-chr13-89634370-1	chr13	89634270	89634470	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93734.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.02	1.26	0.0	0.8	2.45	5.02	0.0	4.29	2.56	7.03	13.57	2.51
Merged-chr9-69949199-1	chr9	69949099	69949299	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-40267.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	4.85	3.02	2.28	0.0	2.86	2.2	1.66	4.79	10.23	9.54	8.54	4.07
Merged-chr16-94503315-1	chr16	94503215	94503415	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	23314.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.04	2.77	0.57	2.01	3.27	5.33	4.65	6.28	2.95	3.51	3.52	1.57
Merged-chr15-41029803-1	chr15	41029703	41029903	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-143898.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	3.23	0.5	0.0	1.21	5.32	1.25	3.32	4.51	1.38	4.02	1.0	1.57
Merged-chr6-39067372-1	chr6	39067272	39067472	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040523, intron 1 of 3)	intron (NR_040523, intron 1 of 3)	214.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	2.02	7.29	5.13	2.82	5.73	6.9	4.65	3.39	13.57	3.01	6.53	4.7
Merged-chr14-66261133-1	chr14	66261033	66261233	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	19919.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	8.08	5.79	8.56	7.64	0.82	6.59	1.0	5.55	4.92	7.03	4.52	8.77
Merged-chr14-56887710-1	chr14	56887610	56887810	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360643, intron 1 of 24)	intron (NM_001360643, intron 1 of 24)	867.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	1.62	6.04	7.99	2.82	6.55	4.7	3.99	1.4	7.67	9.04	9.55	4.7
Merged-chr11-8567988-2	chr11	8567880	8568080	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	Lx8|LINE|L1	96555.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	8.48	8.8	3.42	4.42	9.0	5.02	5.98	4.79	5.7	8.03	1.51	9.4
Merged-chrX-23693615-1	chrX	23693515	23693715	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	564.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	2.42	3.77	2.28	9.25	6.55	3.45	11.63	4.29	9.83	8.54	14.07	7.21
Merged-chr11-5745062-1	chr11	5744962	5745162	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	-3886.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	1.62	2.52	6.85	6.84	0.82	4.7	1.99	4.43	17.11	5.52	6.03	6.89
Merged-chr5-24081997-1	chr5	24081897	24082097	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18593.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.0	0.75	1.14	0.0	3.27	1.88	5.31	5.47	2.36	1.0	0.0	0.31
Merged-chr5-103937700-1	chr5	103937600	103937800	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-26441.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	3.23	3.52	11.41	5.23	0.82	5.64	2.99	4.35	5.51	6.03	7.03	4.39
Merged-chr4-40244923-1	chr4	40244823	40245023	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5098.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	4.04	8.55	8.56	4.83	9.82	4.39	3.65	4.29	16.33	3.51	2.01	2.51
Merged-chr13-31227626-1	chr13	31227526	31227726	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045957, intron 1 of 2)	L1MA6|LINE|L1	13460.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	1.62	2.52	1.14	1.61	2.86	6.27	1.33	9.0	3.54	2.51	4.02	0.94
Merged-chr12-72086566-1	chr12	72086466	72086666	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001205067, intron 1 of 6)	B1_Mus2|SINE|Alu	727.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	7.67	2.26	10.27	3.62	6.55	4.39	6.98	8.92	8.06	13.56	4.52	4.39
Merged-chr16-65404607-1	chr16	65404507	65404707	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116022.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	6.06	3.02	11.41	4.42	6.55	5.02	1.33	5.75	5.11	3.01	9.04	3.76
Merged-chr5-130852274-2	chr5	130852202	130852402	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	403510.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	2.83	4.78	5.13	13.27	4.5	2.51	3.32	8.33	6.49	9.54	5.53	6.58
Merged-chr13-110523219-1	chr13	110523119	110523319	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	128175.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	1.26	10.84	3.62	4.5	6.59	6.98	6.64	4.52	5.02	13.57	4.39
Merged-chr13-10542912-1	chr13	10542812	10543012	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182109.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.81	3.02	1.14	0.8	4.91	5.64	3.32	5.69	1.97	5.02	7.54	3.13
Merged-chr16-21248917-2	chr16	21248820	21249020	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_046162, exon 5 of 5)	non-coding (NR_046162, exon 5 of 5)	7146.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	4.85	8.8	2.28	6.84	2.05	2.2	3.99	4.57	3.15	4.52	7.54	3.76
Merged-chr7-126832111-1	chr7	126832011	126832211	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183131)	promoter-TSS (NM_183131)	-615.0	NM_183131	78118.0	Mm.107753	NM_183131	ENSMUSG00000045989	4930451I11Rik	-	RIKEN cDNA 4930451I11 gene	protein-coding	6.06	3.02	2.28	0.8	7.77	8.15	1.0	3.5	5.7	7.03	4.02	3.45
Merged-chr14-22818224-1	chr14	22818124	22818324	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-275426.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.83	0.5	0.0	4.42	0.0	3.45	3.65	4.68	1.18	1.0	2.51	2.19
Merged-chr18-46740951-1	chr18	46740851	46741051	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	628.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	3.63	2.26	4.56	0.0	4.5	5.96	1.99	4.29	11.6	1.51	4.52	5.01
Merged-chr17-14960761-1	chr17	14960661	14960861	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024250, intron 1 of 11)	CpG	499.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	5.65	5.79	3.42	4.42	7.36	6.59	7.31	5.55	1.97	5.52	5.53	4.39
Merged-chr15-59651876-1	chr15	59651776	59651976	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3222.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.02	8.8	3.99	2.41	4.91	7.21	4.98	3.87	2.95	6.03	4.02	2.19
Merged-chr6-83030003-2	chr6	83029912	83030112	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001291799)	TTS (NM_001291799)	3459.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	8.08	5.79	5.13	4.83	6.14	5.33	4.65	3.81	2.75	5.02	1.0	0.0
Merged-chr2-25319057-1	chr2	25318957	25319157	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_008169, exon 1 of 20)	5' UTR (NM_008169, exon 1 of 20)	130.0	NM_008169	14810.0	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	8.08	8.8	2.85	0.8	0.82	0.0	1.33	3.42	3.34	3.51	4.52	3.13
Merged-chr6-148283577-1	chr6	148283477	148283677	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347518, intron 10 of 18)	intron (NM_001347518, intron 10 of 18)	-71079.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	4.85	1.26	0.0	1.21	0.41	5.02	1.99	4.71	0.2	1.0	3.01	0.94
Merged-chr6-43420540-1	chr6	43420440	43420640	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-21889.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.81	2.26	4.56	1.61	1.64	4.7	4.98	3.39	7.67	3.01	3.52	3.76
Merged-chr12-117728878-1	chr12	117728778	117728978	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175930, intron 21 of 27)	intron (NM_175930, intron 21 of 27)	-114983.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	6.86	4.78	2.28	8.85	2.86	3.14	4.65	6.36	5.51	2.51	3.01	5.01
Merged-chr7-72345638-1	chr7	72345538	72345738	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39043.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.81	0.25	2.28	0.4	0.0	5.64	0.33	5.64	0.0	0.0	0.0	0.0
Merged-chr10-82985684-1	chr10	82985584	82985784	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_021439, exon 1 of 3)	5' UTR (NM_021439, exon 1 of 3)	187.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	6.46	3.77	2.85	1.61	8.18	2.51	6.31	2.02	3.54	1.51	4.02	1.57
Merged-chr1-135136690-1	chr1	135136590	135136790	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177081, intron 5 of 9)	intron (NM_177081, intron 5 of 9)	3381.0	NM_001356382	320139.0	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	5.65	4.78	9.13	1.21	10.64	0.63	2.33	3.7	12.19	11.05	11.05	2.82
Merged-chr14-121641475-1	chr14	121641375	121641575	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081039, intron 11 of 53)	intron (NM_001081039, intron 11 of 53)	56942.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	1.21	3.52	2.28	4.42	4.5	1.57	4.32	5.47	1.38	4.02	2.51	1.88
Merged-chr1-131983132-3	chr1	131983050	131983250	+	611.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145977)	TTS (NM_145977)	12541.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	13.33	8.55	6.85	8.04	7.36	7.84	5.65	5.58	7.08	7.03	5.53	3.45
Merged-chr2-152397227-4	chr2	152397048	152397248	+	611.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011438, exon 1 of 1)	exon (NM_011438, exon 1 of 1)	898.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	6.06	8.3	4.56	6.44	2.05	6.59	2.99	2.86	4.72	3.01	6.53	4.07
Merged-chr13-37658714-3	chr13	37658595	37658795	+	611.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167343.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.27	10.82	1.14	2.82	4.5	5.02	6.98	5.72	8.06	11.55	10.05	8.77
Merged-chr2-60883109-2	chr2	60883000	60883200	+	611.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1662.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.04	3.02	5.13	5.23	7.36	2.82	3.65	2.47	8.46	6.03	6.03	6.89
Merged-chr2-102500167-1	chr2	102500067	102500267	+	611.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-48375.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	4.85	3.02	11.41	6.84	1.64	4.39	2.99	2.72	9.24	10.54	5.53	5.01
Merged-chr6-113017830-1	chr6	113017730	113017930	+	611.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28472.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	3.63	5.79	3.42	6.03	3.27	7.84	7.31	5.41	3.93	10.04	7.03	4.39
Merged-chr5-53355266-1	chr5	53355166	53355366	+	611.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88160.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	1.62	9.56	5.7	20.51	6.95	8.15	9.3	5.58	8.85	6.53	9.55	5.33
Merged-chr8-24386652-1	chr8	24386552	24386752	+	611.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52294.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	1.21	3.52	3.99	2.01	5.32	6.59	4.32	3.59	2.56	4.02	4.52	5.64
Merged-chr7-114894217-2	chr7	114894095	114894295	+	611.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54455.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.63	4.02	8.56	6.84	3.27	1.25	2.33	6.2	9.24	10.04	5.53	9.08
Merged-chr6-4748220-2	chr6	4748121	4748321	+	611.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040611, intron 1 of 1)	CpG	915.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	5.25	4.28	3.99	7.24	6.14	3.76	1.99	9.17	8.85	8.03	14.07	10.96
Merged-chr8-86900014-1	chr8	86899914	86900114	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-14756.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	1.26	0.0	0.0	6.14	1.88	4.32	6.5	0.59	2.01	0.0	0.31
Merged-chr10-94277932-1	chr10	94277832	94278032	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20771.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.0	1.76	5.13	3.22	5.73	6.59	8.3	3.98	0.39	4.52	0.0	0.0
Merged-chr5-105292422-1	chr5	105292322	105292522	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	1277.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.4	3.27	1.14	3.22	4.91	4.7	6.64	5.21	13.77	3.51	4.52	3.13
Merged-chr16-87584844-1	chr16	87584744	87584944	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144854, intron 4 of 4)	intron (NM_144854, intron 4 of 4)	31514.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	2.83	1.51	0.0	0.8	6.55	6.59	4.65	4.96	3.34	1.0	3.52	3.76
Merged-chr17-87176296-1	chr17	87176196	87176396	+	611.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18646.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	4.04	2.26	2.28	6.84	5.32	3.45	6.31	2.64	12.78	9.04	8.54	13.47
Merged-chr1-88258054-1	chr1	88257954	88258154	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_198652)	TTS (NM_198652)	11354.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	2.42	5.53	6.85	7.24	5.32	2.51	8.97	3.36	8.85	3.51	4.02	9.71
Merged-chr10-67190487-1	chr10	67190387	67190587	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	4737.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	2.02	4.02	1.14	1.61	9.0	7.21	1.99	5.05	1.77	6.53	6.53	3.13
Merged-chr14-62879663-2	chr14	62879546	62879746	+	611.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	14104.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	7.67	4.28	2.28	8.85	10.64	8.78	0.0	4.29	7.28	2.51	8.54	1.25
Merged-chr2-120170985-1	chr2	120170885	120171085	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177845, intron 17 of 19)	intron (NM_177845, intron 17 of 19)	-16410.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	7.27	8.3	2.28	5.63	2.86	5.64	7.31	4.65	8.65	2.01	3.01	2.51
Merged-chr15-84212306-2	chr15	84212223	84212423	+	611.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178614, intron 14 of 14)	intron (NM_178614, intron 14 of 14)	-19720.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.46	9.06	3.42	8.04	3.27	6.9	6.64	3.06	6.88	3.01	5.02	6.58
Merged-chr5-139437682-1	chr5	139437582	139437782	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	14503.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	2.02	1.76	3.42	1.61	4.09	3.14	5.31	6.64	1.97	0.0	4.02	5.33
Merged-chr2-33098047-1	chr2	33097947	33098147	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-10794.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	5.65	2.01	5.7	2.82	7.77	3.45	4.98	4.54	6.1	1.0	4.52	7.52
Merged-chr8-126919449-1	chr8	126919349	126919549	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26472.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	1.21	3.02	6.85	3.22	5.32	5.02	2.33	5.64	5.7	4.52	3.52	5.01
Merged-chr11-74469117-1	chr11	74469017	74469217	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 3 of 24)	GA-rich|Low_complexity|Low_complexity	104446.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	3.23	5.28	5.7	3.62	5.73	7.53	8.64	5.33	5.7	9.04	5.02	4.7
Merged-chr19-45079908-1	chr19	45079808	45080008	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001362398)	TTS (NM_001362398)	3821.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	7.27	5.79	5.7	4.02	7.77	8.78	1.33	5.07	5.9	11.55	4.02	5.95
Merged-chr12-102370228-1	chr12	102370128	102370328	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 6 of 9)	ID_B1|SINE|B4	69585.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.81	2.01	1.71	0.8	1.23	4.7	2.99	5.24	2.16	1.51	7.03	0.63
Merged-chr14-10546131-3	chr14	10546031	10546231	+	611.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-92673.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	11.71	6.79	7.99	4.83	8.18	8.15	2.99	5.86	8.85	9.04	7.54	7.83
Merged-chr15-81564128-2	chr15	81564018	81564218	+	611.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	8.08	2.77	14.26	4.02	8.59	8.15	5.31	6.2	14.95	7.53	6.53	5.64
Merged-chr4-75394461-2	chr4	75394348	75394548	+	611.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116156.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.86	6.79	4.56	8.04	7.36	5.33	7.97	6.7	4.92	6.03	5.53	3.13
Merged-chr7-17091526-1	chr7	17091426	17091626	+	611.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310628, intron 2 of 5)	intron (NM_001310628, intron 2 of 5)	17486.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	1.62	4.28	9.13	8.04	13.91	3.14	1.66	3.76	10.42	3.51	11.05	8.77
Merged-chrX-140544870-3	chrX	140544779	140544979	+	611.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010286, intron 1 of 3)	intron (NM_010286, intron 1 of 3)	-2211.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	7.27	9.06	7.99	8.04	13.91	7.84	3.32	3.81	10.03	12.55	9.55	9.4
Merged-chr1-124073765-3	chr1	124073673	124073873	+	611.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-28214.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.83	5.28	12.55	14.48	9.0	2.51	3.65	5.47	10.03	8.03	11.56	2.19
Merged-chr12-72821074-3	chr12	72821002	72821202	+	611.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59891.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	7.67	8.55	5.13	4.02	3.27	8.15	4.65	5.52	9.83	4.02	9.55	6.89
Merged-chr2-170144052-2	chr2	170143958	170144158	+	611.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1383.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.44	1.76	3.42	5.23	4.09	5.96	5.31	5.07	9.44	8.54	11.05	7.83
Merged-chr4-134480957-2	chr4	134480870	134481070	+	611.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12650.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	5.25	2.52	6.85	5.63	8.18	12.54	5.65	6.25	7.87	11.05	11.56	3.13
Merged-chr16-91724468-3	chr16	91724355	91724555	+	611.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 1 of 11)	B3|SINE|B2	4347.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	5.65	4.28	11.41	8.45	6.55	5.02	1.33	5.64	12.0	8.03	6.03	8.46
Merged-chr8-122911709-2	chr8	122911606	122911806	+	611.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 3 of 12)	RSINE1|SINE|B4	63332.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.81	1.51	6.28	0.8	4.91	2.82	9.63	5.61	9.64	2.51	13.06	5.95
Merged-chr18-4313447-1	chr18	4313347	4313547	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39506.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	2.42	3.77	14.26	5.23	4.91	2.82	7.97	9.39	7.67	8.03	13.57	5.01
Merged-chr18-12347531-1	chr18	12347431	12347631	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010680, intron 1 of 74)	intron (NM_010680, intron 1 of 74)	13507.0	NM_010680	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.81	2.01	0.0	0.4	3.68	1.57	4.98	4.35	0.2	0.5	0.5	0.31
Merged-chr17-47436946-1	chr17	47436846	47437046	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145489, exon 1 of 5)	exon (NM_145489, exon 1 of 5)	307.0	NM_145489	224833.0	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	4.85	7.04	4.56	3.62	0.82	5.02	2.33	4.01	1.77	3.01	4.02	1.25
Merged-chr3-82795826-1	chr3	82795726	82795926	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3e|LINE|L1	80657.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	1.62	1.76	1.14	1.61	5.73	3.76	3.32	4.46	1.77	0.5	4.02	2.82
Merged-chr1-136707586-1	chr1	136707486	136707686	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037986, intron 2 of 4)	ORR1B2|LTR|ERVL-MaLR	11375.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	3.23	3.77	2.28	5.63	0.41	6.27	0.66	3.42	7.28	5.52	7.54	8.14
Merged-chr11-75907635-1	chr11	75907535	75907735	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029548, intron 2 of 7)	intron (NM_029548, intron 2 of 7)	3424.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	4.44	4.02	3.42	2.82	8.18	8.15	2.66	2.94	3.74	2.01	5.53	0.31
Merged-chr5-110986895-1	chr5	110986795	110986995	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-17249.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	1.62	3.52	6.85	5.63	4.91	5.02	3.99	10.46	0.79	0.5	4.02	1.88
Merged-chr4-136054122-1	chr4	136054022	136054222	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-751.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.85	1.01	3.42	2.82	6.55	5.96	1.66	5.21	7.67	6.53	5.02	1.25
Merged-chr2-152781296-1	chr2	152781196	152781396	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_149254, exon 2 of 2)	non-coding (NR_149254, exon 2 of 2)	27123.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.81	6.04	4.56	5.23	0.41	6.59	3.32	4.77	2.95	3.51	5.02	2.19
Merged-chr10-58496675-1	chr10	58496575	58496775	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1262.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	8.88	7.8	6.85	3.22	0.82	1.88	1.99	1.04	2.56	5.52	4.02	1.25
Merged-chr6-83137133-1	chr6	83137033	83137233	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009106)	promoter-TSS (NM_009106)	49.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	2.02	4.02	3.99	6.44	10.64	3.45	5.31	5.13	1.97	3.51	3.01	1.57
Merged-chr13-104504262-1	chr13	104504162	104504362	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	216427.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	2.42	2.52	1.71	1.21	3.27	3.45	0.66	1.82	7.87	6.03	9.55	5.95
Merged-chr18-36508297-1	chr18	36508197	36508397	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7508.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	7.67	7.55	0.0	2.41	8.18	5.64	2.33	1.32	7.67	4.52	2.51	1.88
Merged-chr2-25575530-1	chr2	25575430	25575630	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	-659.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	1.21	5.28	2.28	1.61	5.73	4.39	10.3	6.08	9.44	6.53	2.01	5.64
Merged-chr6-128851308-1	chr6	128851208	128851408	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	RMER12B|LTR|ERVK	-24993.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.81	3.27	1.14	2.01	7.36	6.59	2.99	3.93	5.9	11.05	7.03	2.19
Merged-chr17-81493378-1	chr17	81493278	81493478	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	245009.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	4.02	10.27	5.23	6.95	3.76	1.99	5.44	3.74	2.51	3.52	1.57
Merged-chr14-50837443-1	chr14	50837343	50837543	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009351, exon 37 of 55)	exon (NM_009351, exon 37 of 55)	29527.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.65	6.04	10.27	5.23	5.32	2.51	2.66	3.95	9.05	19.08	3.01	7.52
Merged-chr4-46356012-1	chr4	46355912	46356112	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11818.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	2.42	10.31	5.7	0.8	0.82	5.33	1.33	4.01	0.59	0.5	5.02	3.76
Merged-chr2-167360259-1	chr2	167360159	167360359	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11081.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.63	1.51	1.14	2.82	7.36	0.94	2.99	6.17	3.54	3.01	3.52	2.82
Merged-chr7-7130460-1	chr7	7130360	7130560	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_029584)	TTS (NM_029584)	6295.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	6.86	8.8	7.42	3.22	4.91	3.76	3.65	4.65	7.08	3.01	5.53	0.31
Merged-chr4-86943771-1	chr4	86943671	86943871	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	69357.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	9.29	7.04	14.26	9.65	13.5	13.8	8.3	7.74	0.0	0.0	0.0	0.0
Merged-chr18-52600716-2	chr18	52600608	52600808	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15207.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.81	3.77	0.0	5.63	1.23	6.59	3.32	3.84	4.52	7.53	10.05	6.58
Merged-chr12-110503007-1	chr12	110502907	110503107	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	17268.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	2.42	1.01	4.56	0.4	0.82	3.45	6.31	6.25	2.16	4.02	6.53	6.27
Merged-chr1-55594157-1	chr1	55594057	55594257	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	188211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.65	3.77	2.28	6.44	4.91	7.53	18.6	4.32	4.13	1.0	9.55	8.77
Merged-chr8-39498059-1	chr8	39497959	39498159	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	144619.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.0	0.75	1.14	2.41	1.64	4.7	6.64	7.15	2.56	1.0	2.01	3.13
Merged-chr6-134218041-1	chr6	134217941	134218141	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-178288.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.42	2.52	1.14	4.83	7.36	1.57	1.99	10.63	7.67	6.03	5.53	4.39
Merged-chr18-61113001-1	chr18	61112901	61113101	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4467.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	4.44	2.01	1.14	4.02	1.23	4.7	2.33	5.02	3.93	5.52	14.57	4.7
Merged-chr1-56943963-1	chr1	56943863	56944063	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	27371.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	4.85	3.52	2.85	3.62	1.64	5.64	1.66	3.98	3.54	1.0	2.01	5.01
Merged-chr17-70756060-1	chr17	70755960	70756160	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	90717.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	12.11	4.53	9.13	1.61	4.5	9.41	3.32	5.44	5.9	7.03	4.02	3.13
Merged-chr1-10105408-1	chr1	10105308	10105508	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026493, intron 17 of 29)	intron (NM_026493, intron 17 of 29)	67190.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.0	1.01	0.0	0.0	3.27	2.51	3.99	3.31	2.16	0.5	3.52	2.51
Merged-chr13-56748042-1	chr13	56747942	56748142	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	44374.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	1.21	1.51	3.42	1.61	6.55	4.39	3.32	5.36	1.77	0.0	2.01	3.76
Merged-chr11-119305483-2	chr11	119305398	119305598	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5455.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	7.67	7.29	1.71	4.83	10.23	8.47	2.66	3.87	6.88	13.56	6.03	4.39
Merged-chr7-128057201-1	chr7	128057101	128057301	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5439.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	8.48	8.05	9.13	8.04	7.36	4.39	0.66	3.81	6.1	12.55	5.02	7.21
Merged-chr7-45107218-1	chr7	45107118	45107318	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3396.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	6.46	3.77	12.55	7.24	4.5	5.96	3.32	5.58	2.95	4.52	5.02	2.82
Merged-chr3-8913917-1	chr3	8913817	8914017	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025434, intron 1 of 2)	ERVL-int|LTR|ERVL	9940.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	14.54	8.3	2.85	2.41	6.14	5.96	1.0	1.63	9.64	5.52	2.01	2.82
Merged-chr8-111662686-2	chr8	111662586	111662786	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	19243.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	11.31	1.26	9.13	1.61	2.45	10.98	7.31	5.66	10.62	7.03	8.54	4.07
Merged-chr3-95653128-1	chr3	95653028	95653228	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5593.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.65	3.27	3.42	0.0	6.14	4.08	3.65	1.46	8.85	5.52	6.53	5.33
Merged-chr3-108295586-1	chr3	108295486	108295686	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	11522.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	4.44	0.5	1.14	4.02	5.73	3.76	1.99	6.48	5.51	2.01	2.01	1.25
Merged-chr18-5840124-1	chr18	5840024	5840224	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	247477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.81	4.02	3.42	5.63	1.23	7.21	5.31	4.49	14.16	1.51	13.57	5.01
Merged-chr6-106279615-1	chr6	106279515	106279715	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	160850.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.0	2.77	2.28	0.0	3.27	5.96	4.65	9.48	0.0	1.0	0.5	0.0
Merged-chr15-5241483-1	chr15	5241383	5241583	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2704.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	5.25	5.28	3.42	2.41	2.45	3.14	0.66	2.94	10.03	7.03	9.04	1.25
Merged-chr2-61595542-2	chr2	61595423	61595623	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149323, intron 2 of 9)	B1_Mur1|SINE|Alu	2426.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.46	4.02	0.0	0.8	9.41	12.23	2.66	5.75	10.23	10.54	3.52	8.46
Merged-chr11-75152566-2	chr11	75152464	75152664	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	PB1D10|SINE|Alu	15588.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.67	6.04	3.42	7.64	6.95	7.53	9.63	3.31	8.26	3.51	10.05	6.58
Merged-chr16-57535000-1	chr16	57534900	57535100	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	MER58B|DNA|hAT-Charlie	-14242.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.86	4.53	0.0	1.61	6.55	5.96	1.0	6.03	4.52	2.51	2.51	0.94
Merged-chr8-125542824-1	chr8	125542724	125542924	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	27039.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.63	6.54	1.14	6.03	2.86	5.33	2.33	4.51	0.98	2.01	2.01	0.0
Merged-chr4-59832959-1	chr4	59832859	59833059	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	27309.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	7.67	4.02	3.99	4.83	4.09	5.02	4.32	6.64	1.38	6.53	5.02	1.57
Merged-chr9-96526194-2	chr9	96526097	96526297	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-47522.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.04	3.52	4.56	1.21	6.14	6.27	3.99	4.85	9.83	8.03	12.06	9.71
Merged-chr2-33227477-2	chr2	33227377	33227577	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011923, intron 1 of 4)	L2b|LINE|L2	11516.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	4.44	2.77	8.56	12.07	2.45	5.64	6.31	12.06	7.87	10.04	6.03	10.02
Merged-chr1-37001407-2	chr1	37001302	37001502	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-61875.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	11.71	5.28	5.13	10.46	7.36	2.82	3.99	4.88	5.11	3.01	4.52	6.27
Merged-chr15-9435938-2	chr15	9435814	9436014	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029341)	promoter-TSS (NM_029341)	-114.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	3.23	6.54	4.56	1.21	6.55	3.14	1.66	5.1	13.37	8.54	10.55	3.13
Merged-chr3-154328384-1	chr3	154328284	154328484	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010713, exon 2 of 9)	exon (NM_010713, exon 2 of 9)	2176.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.81	4.02	1.14	1.61	9.41	2.2	8.3	4.26	2.75	5.02	1.51	7.52
Merged-chr14-73239037-1	chr14	73238937	73239137	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1146.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.04	5.79	6.85	5.23	1.64	2.51	9.3	3.98	5.51	5.52	9.55	4.07
Merged-chr7-118802846-1	chr7	118802746	118802946	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	52767.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.44	5.53	2.85	8.85	4.09	3.76	2.33	8.86	9.64	6.53	11.05	3.45
Merged-chr12-116405995-2	chr12	116405886	116406086	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	584.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	9.29	4.78	7.42	4.42	4.91	7.21	5.31	4.71	8.85	3.51	8.54	8.14
Merged-chr5-130000296-1	chr5	130000196	130000396	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357027, intron 2 of 2)	intron (NM_001357027, intron 2 of 2)	2753.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	3.63	2.77	0.0	2.82	5.73	5.96	1.99	5.02	5.11	4.02	2.51	5.95
Merged-chr10-120287942-1	chr10	120287842	120288042	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	60882.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.06	7.8	18.83	7.24	1.64	2.82	3.32	6.73	5.9	1.51	4.52	6.27
Merged-chr16-24685200-1	chr16	24685100	24685300	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 7 of 12)	(A)n|Simple_repeat|Simple_repeat	-36655.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.27	4.78	6.85	2.01	10.23	4.7	5.31	5.38	7.47	2.51	6.03	2.82
Merged-chr11-33986723-1	chr11	33986623	33986823	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	LTR105_Mam|LTR|ERVL	6470.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	3.63	1.26	3.99	5.23	9.0	2.82	3.99	4.57	0.98	4.52	5.02	0.94
Merged-chr19-41912507-1	chr19	41912407	41912607	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023418, intron 1 of 3)	CpG	636.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	12.11	9.81	3.42	4.42	8.18	3.45	5.98	6.36	6.49	7.53	12.06	14.1
Merged-chr12-70783062-1	chr12	70782962	70783162	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42452.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.4	1.01	2.85	2.01	4.09	4.39	4.32	9.84	3.15	2.01	2.51	5.01
Merged-chr9-40762068-1	chr9	40761968	40762168	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39205.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.27	3.52	2.28	4.02	9.41	10.98	1.33	2.86	1.57	0.5	0.5	0.0
Merged-chr2-112262514-1	chr2	112262414	112262614	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025403, exon 2 of 2)	3' UTR (NM_025403, exon 2 of 2)	588.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	1.21	2.77	2.28	0.8	5.73	3.76	4.98	3.5	7.28	9.54	6.03	5.33
Merged-chr16-36660436-1	chr16	36660336	36660536	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	B1_Mus1|SINE|Alu	5641.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	2.02	4.53	5.7	10.46	2.05	7.84	5.31	3.03	3.54	4.02	6.03	5.33
Merged-chr18-69663665-2	chr18	69663559	69663759	+	610.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-261900.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	6.46	2.01	7.99	7.64	9.82	6.9	1.33	4.77	8.65	6.53	15.58	9.71
Merged-chr5-137510713-2	chr5	137510624	137510824	+	610.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-8156.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	8.08	7.29	10.84	8.45	3.68	12.86	8.97	3.2	5.51	6.53	10.05	6.27
Merged-chr16-30262316-1	chr16	30262216	30262416	+	610.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027904, intron 1 of 1)	MIR|SINE|MIR	5216.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	5.65	5.53	2.85	1.61	4.09	3.76	3.99	3.17	6.69	14.06	11.05	7.83
Merged-chr2-118546721-2	chr2	118546629	118546829	+	610.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138313, exon 3 of 5)	exon (NM_138313, exon 3 of 5)	870.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	12.52	10.31	10.84	10.46	6.14	8.47	1.0	5.5	11.41	11.05	4.52	11.28
Merged-chr4-128884186-2	chr4	128884154	128884354	+	610.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178110, exon 1 of 5)	exon (NM_178110, exon 1 of 5)	114.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	4.44	2.52	3.42	7.64	2.86	2.2	1.99	5.44	6.88	5.02	4.02	6.27
Merged-chr1-107503506-1	chr1	107503406	107503606	+	610.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-7917.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	2.42	5.53	4.56	3.62	4.91	8.15	1.99	4.85	11.8	12.05	11.05	6.27
Merged-chr2-4487650-2	chr2	4487554	4487754	+	610.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-72100.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.25	9.81	17.11	10.05	6.14	3.76	5.65	4.01	9.24	7.03	5.53	5.95
Merged-chr14-121865357-3	chr14	121865241	121865441	+	610.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12929.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	6.06	6.04	7.99	4.42	6.95	9.41	5.65	9.7	12.59	7.53	9.55	6.27
Merged-chr15-76251116-3	chr15	76251021	76251221	+	610.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2930.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	9.69	0.75	6.28	1.21	4.5	4.7	1.33	5.78	4.52	12.05	9.55	8.77
Merged-chr13-37893816-1	chr13	37893716	37893916	+	610.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	4945.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.42	0.75	2.28	3.22	4.91	3.14	5.31	6.11	4.52	4.02	1.51	2.19
Merged-chr11-76647743-3	chr11	76647640	76647840	+	610.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24730.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	5.25	8.8	4.56	4.42	7.77	8.15	3.99	4.21	7.87	9.04	7.03	3.13
Merged-chr11-49986393-2	chr11	49986288	49986488	+	610.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-38943.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	10.5	4.53	10.27	2.01	5.73	13.8	5.65	6.08	17.11	12.05	7.54	8.14
Merged-chr15-86137859-1	chr15	86137759	86137959	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001205353)	TTS (NM_001205353)	-47869.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.63	4.02	2.85	1.21	8.18	5.96	2.33	4.96	3.74	2.51	10.55	2.82
Merged-chr1-138328026-1	chr1	138327926	138328126	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54288.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	12.92	5.28	7.99	2.41	7.36	5.33	3.32	5.97	7.08	3.01	9.04	5.01
Merged-chr12-95741514-1	chr12	95741414	95741614	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	49288.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.4	4.53	0.57	2.41	3.68	4.39	4.98	3.79	1.77	1.51	3.01	3.45
Merged-chr7-128000824-2	chr7	128000726	128000926	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-3552.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	2.83	8.05	11.41	8.04	2.86	7.84	2.99	4.96	5.51	7.03	0.5	6.58
Merged-chr11-34060183-3	chr11	34060082	34060282	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	13254.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	12.11	3.27	11.41	3.22	6.95	7.84	7.64	4.46	10.42	5.52	10.05	9.71
Merged-chr3-52924035-2	chr3	52923937	52924137	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040555, intron 2 of 4)	intron (NR_040555, intron 2 of 4)	3629.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	8.88	1.01	6.28	14.08	1.64	3.14	3.99	7.68	4.52	2.51	2.51	4.39
Merged-chr9-103228557-1	chr9	103228457	103228657	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	1729.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	5.25	0.0	2.28	1.21	7.77	0.63	3.32	5.41	2.56	1.0	1.51	1.57
Merged-chr13-99184336-2	chr13	99184205	99184405	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	-518.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.63	8.3	3.42	7.64	3.68	3.14	4.98	5.55	1.18	2.51	4.02	4.7
Merged-chr15-101333913-1	chr15	101333813	101334013	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-35439.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	4.04	3.27	2.28	3.22	8.59	4.39	1.99	5.8	3.54	2.01	7.54	2.51
Merged-chr14-63077332-2	chr14	63077233	63077433	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	22260.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	5.25	7.29	8.56	4.83	4.09	6.9	3.32	5.38	8.46	15.57	9.55	6.27
Merged-chr1-189701225-1	chr1	189701125	189701325	+	610.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13139.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	8.88	1.76	4.56	8.45	4.5	3.14	3.99	4.71	9.83	17.07	10.55	7.21
Merged-chr16-42169952-1	chr16	42169852	42170052	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	133517.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	8.08	4.02	4.56	4.02	9.82	3.14	4.65	5.07	2.16	2.51	6.53	3.13
Merged-chr11-69323216-2	chr11	69323134	69323334	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024206)	promoter-TSS (NM_001024206)	639.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	12.52	7.04	3.42	8.04	9.41	3.14	4.32	4.6	6.29	8.54	7.03	6.58
Merged-chr9-62373953-2	chr9	62373849	62374049	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	32606.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	8.08	8.8	2.28	2.82	4.5	10.03	7.64	6.79	7.08	7.03	12.56	6.27
Merged-chr1-63111017-1	chr1	63110917	63111117	+	610.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114609, intron 1 of 11)	B3|SINE|B2	3250.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	7.27	3.77	5.13	0.8	3.68	12.54	0.0	1.46	8.46	6.53	10.05	8.77
Merged-chr10-121266783-1	chr10	121266683	121266883	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44613.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.42	2.52	2.85	4.02	3.27	5.64	7.31	5.27	0.39	3.51	2.01	0.63
Merged-chr10-79777192-1	chr10	79777092	79777292	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031380)	promoter-TSS (NM_031380)	-82.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	2.02	2.52	0.0	1.21	5.73	6.9	2.33	4.51	5.51	7.53	1.51	5.01
Merged-chr11-96064652-2	chr11	96064511	96064711	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172300, intron 1 of 6)	CpG	753.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	2.02	4.28	8.56	2.82	1.23	3.76	3.65	3.7	4.92	4.02	3.01	5.95
Merged-chr19-10171969-2	chr19	10171874	10172074	+	610.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-10914.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	2.83	3.77	10.84	4.83	6.14	7.84	5.65	5.52	8.26	5.02	13.57	8.77
Merged-chr11-101232361-2	chr11	101232252	101232452	+	610.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5889.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	8.88	4.28	9.7	1.61	13.5	5.33	4.65	4.96	4.72	6.03	8.04	4.07
Merged-chr3-100568700-3	chr3	100568573	100568773	+	610.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010763, intron 12 of 12)	intron (NM_010763, intron 12 of 12)	-79481.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	6.86	6.04	4.56	12.87	2.86	4.08	6.31	6.08	7.28	10.04	12.06	5.95
Merged-chrX-135091299-2	chrX	135091184	135091384	+	610.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-30948.0	NR_040282	320606.0	Mm.439072	NR_040281	ENSMUSG00000089759	3632454L22Rik	-	RIKEN cDNA 3632454L22 gene	ncRNA	7.27	5.79	11.41	8.04	3.68	8.47	4.65	6.84	9.05	7.53	13.06	6.58
Merged-chr11-110537807-2	chr11	110537740	110537940	+	610.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58500.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	7.27	4.53	3.99	8.85	4.5	2.2	0.66	1.46	11.8	12.05	7.03	5.64
Merged-chr11-100369184-2	chr11	100369072	100369272	+	610.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13031.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	11.71	7.29	7.99	10.46	5.32	7.53	2.99	3.93	13.57	6.03	9.04	5.64
Merged-chr4-3419910-2	chr4	3419815	3420015	+	610.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117175.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	1.01	1.71	0.0	2.45	10.03	5.65	0.84	9.05	4.02	15.07	8.14
Merged-chr7-35235415-3	chr7	35235294	35235494	+	610.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-20049.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	2.42	7.55	7.99	8.45	9.0	6.27	9.3	3.84	3.93	7.53	10.05	7.21
Merged-chr4-103110169-2	chr4	103110067	103110267	+	610.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146254, intron 1 of 16)	ID_B1|SINE|B4	4132.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	3.63	4.78	2.85	3.22	8.18	3.76	2.33	4.79	2.16	5.02	11.05	4.39
Merged-chr9-62968521-3	chr9	62968424	62968624	+	610.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	Charlie1a|DNA|hAT-Charlie	12355.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	7.67	7.55	12.55	5.63	5.73	8.15	3.65	6.53	8.26	7.53	4.52	6.27
Merged-chr17-10355763-1	chr17	10355663	10355863	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	31161.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.63	4.02	0.0	8.04	2.86	5.02	3.32	5.5	0.98	4.52	3.52	3.76
Merged-chr4-15266607-1	chr4	15266507	15266707	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	787.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	7.27	2.26	2.28	6.44	10.23	5.96	8.3	6.93	6.1	6.53	8.04	8.77
Merged-chr5-21267277-1	chr5	21267177	21267377	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153365, intron 18 of 26)	Lx8|LINE|L1	81010.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	2.42	2.26	0.0	6.03	5.73	3.76	5.65	4.99	3.34	1.0	0.0	1.88
Merged-chr15-91651686-1	chr15	91651586	91651786	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21538.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.81	1.51	1.71	0.8	7.36	5.33	3.65	7.04	5.11	0.0	9.04	4.7
Merged-chr1-106221062-1	chr1	106220962	106221162	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	49193.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.25	3.52	4.56	0.8	6.95	3.14	0.0	5.16	4.13	2.01	2.51	0.63
Merged-chr14-50925685-2	chr14	50925576	50925776	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	727.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	7.27	4.78	14.83	3.22	7.36	3.14	4.98	5.21	8.85	5.02	10.55	6.27
Merged-chr11-119273532-1	chr11	119273432	119273632	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008064, intron 3 of 19)	MTD|LTR|ERVL-MaLR	5569.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.63	4.02	5.13	1.21	1.23	3.14	1.99	2.19	9.83	4.52	9.04	3.45
Merged-chr4-121010568-1	chr4	121010468	121010668	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	6679.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	14.13	7.29	7.99	1.61	1.64	3.76	3.65	3.64	9.44	5.02	9.55	6.58
Merged-chr2-103982421-2	chr2	103982312	103982512	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001142337)	TTS (NM_001142337)	12125.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	2.42	5.79	5.7	3.22	10.64	12.54	2.66	5.41	11.8	9.54	18.09	6.89
Merged-chr19-34553148-1	chr19	34553048	34553248	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	2060.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	4.85	4.78	2.85	5.23	4.09	2.51	3.99	5.38	6.88	5.52	2.51	2.82
Merged-chr3-81150086-1	chr3	81149986	81150186	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357746, intron 3 of 6)	(TATATG)n|Simple_repeat|Simple_repeat	113670.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.85	8.05	14.83	4.02	1.64	0.31	0.66	3.31	8.46	5.02	4.52	1.25
Merged-chr11-75455580-1	chr11	75455480	75455680	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	-863.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	2.83	1.76	1.14	2.41	8.18	0.94	8.64	4.07	5.9	5.52	5.02	9.4
Merged-chr19-5928551-1	chr19	5928451	5928651	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-3735.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	2.02	3.52	3.42	1.21	4.5	4.39	0.0	0.53	3.15	3.51	2.51	4.7
Merged-chr12-73342349-1	chr12	73342249	73342449	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 10 of 15)	intron (NM_001037717, intron 10 of 15)	55501.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.81	1.01	1.71	0.8	1.64	1.25	7.97	6.5	2.56	0.0	2.01	1.57
Merged-chr5-43892573-1	chr5	43892473	43892673	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	23764.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.44	2.52	3.42	5.23	9.41	5.33	2.33	5.44	6.1	2.51	9.55	2.51
Merged-chr4-139229356-1	chr4	139229256	139229456	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	35245.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	2.42	1.51	3.42	3.22	7.36	2.51	3.65	5.58	2.95	2.51	4.52	0.63
Merged-chr2-136916348-1	chr2	136916248	136916448	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	16997.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	2.42	6.79	3.42	5.63	3.68	0.94	1.33	6.95	8.26	3.51	5.53	9.71
Merged-chr1-182954810-1	chr1	182954710	182954910	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	22.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	9.29	2.77	9.7	2.82	5.32	1.88	2.99	3.53	5.7	6.03	7.54	1.88
Merged-chr1-182554141-1	chr1	182554041	182554241	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10866.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	4.04	4.53	2.28	1.21	5.73	5.64	1.0	6.93	6.1	4.02	1.0	2.19
Merged-chr16-38197421-1	chr16	38197321	38197521	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 7 of 11)	intron (NM_001347232, intron 7 of 11)	97403.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	3.23	3.52	1.71	0.0	3.27	8.15	0.0	3.84	2.75	7.03	5.02	4.39
Merged-chr11-83068085-1	chr11	83067985	83068185	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	2973.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	8.08	7.29	0.0	1.21	1.23	2.2	0.33	0.17	1.38	4.02	0.5	0.63
Merged-chr17-3077226-1	chr17	3077126	3077326	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003519, intron 6 of 7)	intron (NR_003519, intron 6 of 7)	6957.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	8.08	2.01	2.28	3.22	1.23	2.51	2.66	4.09	1.97	0.0	1.0	2.51
Merged-chr7-123082395-1	chr7	123082295	123082495	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41490.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	2.02	3.52	2.28	0.0	4.5	2.82	2.33	7.88	2.56	3.51	9.55	8.46
Merged-chr18-12661336-1	chr18	12661236	12661436	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	17803.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	1.62	3.52	3.42	2.41	3.27	1.88	6.98	5.83	15.54	4.52	8.54	4.39
Merged-chr2-91925350-1	chr2	91925250	91925450	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	3161.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	2.52	0.0	4.02	1.64	4.39	1.33	2.72	2.95	2.01	2.51	2.19
Merged-chr8-25978060-2	chr8	25977933	25978133	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1289.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.0	0.0	3.42	0.8	2.86	0.94	5.31	6.17	5.9	7.53	10.05	6.89
Merged-chr15-80073088-1	chr15	80072988	80073188	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5491.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	1.62	2.52	2.28	4.42	4.91	4.08	5.31	4.4	4.72	5.52	5.53	4.07
Merged-chr11-102409269-1	chr11	102409169	102409369	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-1752.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	4.04	4.28	1.14	0.8	9.41	8.78	0.66	2.41	7.08	6.03	2.51	2.51
Merged-chr14-17632002-1	chr14	17631902	17632102	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-28958.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.62	2.77	1.14	1.61	8.18	7.53	6.98	5.02	4.72	0.5	2.01	8.14
Merged-chrX-159910645-1	chrX	159910545	159910745	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	intron (NM_001135728, intron 4 of 12)	-32048.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	3.23	1.01	1.14	0.4	2.45	0.31	1.99	4.04	0.59	3.01	3.01	2.19
Merged-chr15-53128715-1	chr15	53128615	53128815	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	217468.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	1.62	5.03	1.14	4.83	3.68	5.02	6.98	4.46	7.87	3.01	5.53	5.64
Merged-chr15-91190349-1	chr15	91190249	91190449	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 1 of 9)	intron (NM_011994, intron 1 of 9)	1658.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.83	5.53	2.28	3.22	3.27	4.7	7.31	6.5	2.75	6.03	1.51	4.07
Merged-chr4-48492739-1	chr4	48492639	48492839	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19276.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	5.65	4.02	9.7	1.61	2.45	2.51	4.98	4.21	3.93	5.02	6.03	9.4
Merged-chr10-117436859-1	chr10	117436759	117436959	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10576.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	2.83	2.77	2.85	3.22	1.23	1.88	1.33	0.5	2.16	9.54	12.06	5.95
Merged-chr2-45086378-1	chr2	45086278	45086478	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	23899.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.4	3.77	3.42	0.0	4.91	2.82	1.99	4.35	5.11	0.5	3.01	0.94
Merged-chr13-110442439-1	chr13	110442339	110442539	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47395.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.42	0.5	5.7	4.42	0.82	2.51	4.98	4.85	3.15	2.01	5.02	1.57
Merged-chr5-135459760-1	chr5	135459660	135459860	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65214.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.81	2.26	4.56	1.21	3.27	5.64	9.3	0.93	5.9	2.51	7.03	3.45
Merged-chr3-84656383-1	chr3	84656283	84656483	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9809.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.85	0.5	1.71	0.8	3.27	8.15	8.3	4.6	5.51	3.01	3.01	3.13
Merged-chr5-125292786-1	chr5	125292686	125292886	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48308.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.62	1.76	5.7	2.41	6.14	8.15	2.99	4.23	4.52	3.51	3.52	2.82
Merged-chr8-95131459-1	chr8	95131359	95131559	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	11081.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.81	1.26	0.57	0.4	2.45	0.94	5.31	3.87	0.59	0.5	3.01	1.25
Merged-chr13-41828795-1	chr13	41828695	41828895	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 1 of 6)	intron (NM_001145875, intron 1 of 6)	18693.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	2.42	3.77	2.28	3.62	5.73	0.0	0.66	3.76	3.15	2.01	0.0	1.57
Merged-chr2-58791918-1	chr2	58791818	58792018	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029692)	TTS (NM_029692)	36734.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	1.62	4.02	0.0	10.46	1.23	5.64	1.66	7.01	2.75	5.02	6.03	2.82
Merged-chr3-79846777-1	chr3	79846677	79846877	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4115.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.02	2.26	2.28	0.8	9.82	2.82	1.0	6.56	9.44	7.03	6.53	4.7
Merged-chr18-47944864-1	chr18	47944764	47944964	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22023.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	2.02	0.75	1.14	0.8	0.82	5.64	2.99	9.93	3.74	5.02	5.53	3.45
Merged-chr3-121651941-1	chr3	121651841	121652041	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5488.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	1.62	8.05	6.85	1.61	3.27	5.96	2.66	4.46	9.64	5.02	6.53	4.39
Merged-chr4-3508593-1	chr4	3508493	3508693	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28497.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	3.23	6.29	4.56	4.83	12.27	14.11	1.99	4.99	19.28	9.04	10.55	2.51
Merged-chrX-36089055-1	chrX	36088955	36089155	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23053.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	3.63	5.79	6.85	5.63	4.5	6.9	1.33	4.88	4.92	3.51	14.07	4.07
Merged-chr17-25285178-1	chr17	25285078	25285278	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10868.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	7.27	3.52	0.57	0.8	8.59	7.84	4.98	4.49	13.57	4.52	4.02	4.39
Merged-chr6-53958560-1	chr6	53958460	53958660	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027749, intron 3 of 12)	G-rich|Low_complexity|Low_complexity	20113.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	4.04	1.01	5.13	2.41	4.91	4.7	2.33	4.74	4.13	4.52	3.01	3.13
Merged-chr2-45096226-1	chr2	45096126	45096326	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_149354, exon 3 of 3)	non-coding (NR_149354, exon 3 of 3)	14051.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.42	2.52	8.56	2.01	4.91	4.7	4.65	4.37	4.33	4.02	2.51	2.19
Merged-chr19-55835007-1	chr19	55834907	55835107	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-60314.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.44	7.29	9.13	3.62	4.09	3.45	2.66	3.56	10.62	5.02	3.01	1.25
Merged-chr13-60748557-1	chr13	60748457	60748657	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 20 of 26)	intron (NM_134062, intron 20 of 26)	37807.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.83	7.55	0.0	1.21	0.82	10.66	2.66	3.93	1.18	3.51	8.54	7.21
Merged-chr9-32544897-1	chr9	32544797	32544997	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3445.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	7.67	5.79	5.13	3.62	3.27	2.2	2.66	5.52	3.54	5.52	4.02	1.25
Merged-chr4-33250491-1	chr4	33250391	33250591	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1704.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.25	5.79	7.99	8.45	4.09	3.14	3.99	6.67	4.72	5.02	7.03	4.39
Merged-chr15-64301491-1	chr15	64301391	64301591	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	11182.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	2.52	7.42	9.65	3.27	4.7	1.0	8.24	7.67	2.01	14.07	2.82
Merged-chr19-47338039-1	chr19	47337939	47338139	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008018, intron 6 of 14)	intron (NM_008018, intron 6 of 14)	-64450.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	8.48	5.79	1.14	1.21	2.86	2.2	2.99	2.07	6.69	5.52	11.05	1.88
Merged-chr13-49201960-1	chr13	49201860	49202060	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026738)	TTS (NM_026738)	14066.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	2.02	1.01	2.28	1.21	1.23	2.2	5.31	5.02	3.74	3.01	5.02	2.82
Merged-chr11-5008154-1	chr11	5008054	5008254	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	21330.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	5.25	1.51	0.0	0.0	3.27	2.82	7.64	5.97	2.95	4.02	1.0	0.31
Merged-chr11-84813929-1	chr11	84813829	84814029	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145433, exon 5 of 5)	3' UTR (NM_145433, exon 5 of 5)	5586.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	6.06	4.02	2.28	1.61	3.27	4.39	1.33	1.6	9.44	9.04	8.04	7.83
Merged-chr1-88263614-1	chr1	88263514	88263714	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	5794.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	2.52	1.71	0.8	6.14	1.25	3.65	1.82	3.93	5.52	3.52	9.71
Merged-chrX-93689159-1	chrX	93689059	93689259	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_211138, intron 1 of 7)	Charlie7|DNA|hAT-Charlie	14047.0	NM_211138	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	5.25	5.28	8.56	10.05	4.91	3.76	0.66	6.48	3.74	8.54	16.08	9.4
Merged-chr7-84606608-1	chr7	84606508	84606708	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-666.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	2.42	1.51	0.0	1.61	0.82	2.51	6.98	5.13	1.97	2.01	2.01	4.7
Merged-chr5-150107716-1	chr5	150107616	150107816	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89041.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	4.85	0.5	1.14	0.0	2.45	2.51	4.32	9.36	1.77	5.02	3.52	4.07
Merged-chr10-37081709-1	chr10	37081609	37081809	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	57217.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	9.69	3.02	1.14	8.85	1.64	3.14	4.32	6.53	1.18	6.03	3.01	1.88
Merged-chr15-63614666-1	chr15	63614566	63614766	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-135058.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.81	2.01	18.25	8.45	1.64	0.63	5.31	10.91	5.11	2.01	2.01	1.25
Merged-chr4-59529469-1	chr4	59529369	59529569	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178164, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	19895.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	3.02	2.28	0.8	1.64	4.39	0.66	3.7	4.52	0.0	2.01	1.25
Merged-chr10-108446298-1	chr10	108446198	108446398	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	114109.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.4	1.26	1.14	1.61	6.14	1.88	1.99	1.6	0.0	5.52	5.53	1.25
Merged-chr2-119296999-1	chr2	119296899	119297099	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8257.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	2.42	0.0	0.0	0.0	3.27	5.64	1.33	4.15	4.72	3.51	5.53	8.14
Merged-chr8-70729432-1	chr8	70729332	70729532	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	intron (NM_201607, intron 3 of 16)	5368.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	3.23	11.82	1.71	0.0	5.73	7.84	7.31	0.98	9.05	5.02	2.51	1.25
Merged-chr9-74142074-1	chr9	74141974	74142174	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033500, intron 3 of 19)	MER20|DNA|hAT-Charlie	31740.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	1.62	0.0	2.28	0.0	0.82	4.7	1.66	5.78	5.11	2.01	8.04	7.83
Merged-chr11-110611046-1	chr11	110610946	110611146	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	131706.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.08	3.27	7.99	5.63	4.09	5.33	2.66	6.67	3.15	5.02	5.02	2.82
Merged-chr4-134129662-2	chr4	134129561	134129761	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-908.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	2.42	9.56	3.42	2.41	6.14	2.2	4.65	6.25	7.08	4.02	5.53	9.4
Merged-chr9-14751610-1	chr9	14751510	14751710	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	512.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	6.86	7.04	5.7	1.21	7.36	3.76	11.29	5.02	3.74	8.03	12.06	6.58
Merged-chr5-121009665-2	chr5	121009556	121009756	+	609.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011286)	promoter-TSS (NM_011286)	-118.0	NM_011286	19894.0	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	6.46	1.26	11.41	6.84	5.32	6.27	3.65	5.64	8.46	7.53	11.05	8.46
Merged-chr10-112060136-2	chr10	112060032	112060232	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027018)	promoter-TSS (NM_027018)	-57.0	NM_027018	69286.0	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	5.25	5.53	5.13	10.46	8.18	7.84	2.99	6.03	5.31	9.54	15.07	1.88
Merged-chr1-33684667-2	chr1	33684555	33684755	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14831.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	7.27	2.52	2.85	3.62	11.45	8.78	5.31	2.61	13.37	6.03	10.05	4.39
Merged-chr3-89331009-2	chr3	89330898	89331098	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7030.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	5.25	7.55	3.42	6.03	2.05	9.09	5.65	5.75	8.26	8.03	7.54	6.89
Merged-chr8-122940605-1	chr8	122940505	122940705	+	609.75	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	92231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	8.48	8.3	11.41	14.08	4.09	3.14	5.31	6.81	3.74	8.54	0.0	0.94
Merged-chr8-25100402-2	chr8	25100384	25100584	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	1327.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	3.23	3.52	0.57	2.41	2.05	1.57	2.99	1.26	1.77	4.52	4.02	1.57
Merged-chr15-84245985-2	chr15	84245875	84246075	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	L1MB8|LINE|L1	13932.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.65	4.02	3.42	4.02	4.91	10.03	3.65	5.36	12.0	8.54	10.05	7.21
Merged-chr17-71553128-2	chr17	71553028	71553228	+	609.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029254, intron 1 of 6)	RMER15|LTR|ERVL	1067.0	NM_029254	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.4	9.56	10.27	9.65	2.45	3.45	6.31	5.61	3.54	7.03	6.03	2.51
Merged-chr13-113544883-1	chr13	113544783	113544983	+	609.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR52|LTR|ERVL	-42039.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	9.29	7.04	2.28	0.8	6.14	8.47	11.96	3.0	9.83	4.02	4.02	0.94
Merged-chr2-143962347-1	chr2	143962247	143962447	+	609.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024281, intron 10 of 23)	intron (NM_024281, intron 10 of 23)	47016.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.63	2.01	3.42	5.63	5.73	5.64	6.98	5.5	7.47	1.51	11.05	1.25
Merged-chr6-134790197-1	chr6	134790097	134790297	+	609.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-2163.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	4.44	0.25	0.0	1.21	0.82	2.51	5.31	1.65	13.37	8.54	9.55	7.21
Merged-chr3-126599610-3	chr3	126599523	126599723	+	609.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	2672.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.67	6.04	3.99	11.66	4.91	4.08	2.99	13.26	9.44	2.51	12.56	7.21
Merged-chr10-80679747-1	chr10	80679647	80679847	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3454.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	3.63	10.56	2.85	3.22	5.73	4.7	3.32	4.79	6.49	4.52	4.02	6.58
Merged-chr1-192736157-2	chr1	192736054	192736254	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	35065.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.25	5.53	10.84	6.44	4.91	5.96	4.98	3.36	2.36	1.0	10.55	5.01
Merged-chr13-77166233-1	chr13	77166133	77166333	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081353, intron 1 of 3)	MER21C|LTR|ERVL	30697.0	NM_001145676	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	4.04	2.77	3.42	8.85	3.27	5.02	5.65	4.01	4.52	6.03	3.01	5.64
Merged-chr3-108186206-1	chr3	108186106	108186306	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001287093)	promoter-TSS (NM_001287093)	-83.0	NM_001287093	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	8.88	1.26	4.56	3.22	4.5	2.82	5.98	5.16	4.33	2.01	3.01	0.63
Merged-chr19-56817956-1	chr19	56817856	56818056	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4273.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	4.85	4.28	6.28	7.64	7.77	5.02	3.99	5.24	3.54	2.01	3.52	5.01
Merged-chr8-14846239-1	chr8	14846139	14846339	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 15 of 15)	intron (NM_172910, intron 15 of 15)	-42297.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.06	1.01	0.0	2.41	2.05	6.27	3.65	6.76	6.49	6.53	1.51	0.63
Merged-chr5-20938548-1	chr5	20938448	20938648	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-12441.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.44	6.54	10.84	9.65	2.45	5.02	1.33	3.0	3.93	7.03	3.52	1.57
Merged-chr2-28479377-1	chr2	28479277	28479477	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17B|LTR|ERVK	11311.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	2.02	0.0	2.28	1.61	6.14	8.15	1.33	6.11	0.79	0.5	2.01	2.19
Merged-chr8-95136056-2	chr8	95135946	95136146	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 2 of 19)	(TTTTG)n|Simple_repeat|Simple_repeat	6494.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	2.83	8.05	15.4	6.44	5.73	5.02	5.31	1.54	10.42	4.52	3.01	5.95
Merged-chr11-108224788-2	chr11	108224701	108224901	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119087.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	10.09	7.55	7.42	7.64	8.59	2.51	2.99	5.75	4.72	5.52	4.02	7.83
Merged-chr8-72217702-1	chr8	72217602	72217802	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-2028.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	2.42	3.52	0.57	0.0	7.77	14.11	5.98	4.29	1.57	0.0	0.5	3.45
Merged-chr2-147178969-1	chr2	147178869	147179069	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5114.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	6.06	3.02	0.57	4.02	1.64	7.21	3.99	6.2	3.93	1.51	7.03	4.39
Merged-chr18-88798696-1	chr18	88798596	88798796	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95511.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	2.42	3.52	5.7	8.45	2.45	5.96	5.31	5.61	0.98	4.02	7.03	4.07
Merged-chr8-88692154-1	chr8	88692054	88692254	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4874.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.83	0.5	0.57	2.41	4.5	7.21	3.65	5.38	3.74	0.0	2.01	3.13
Merged-chr7-129766631-1	chr7	129766531	129766731	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174768.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.86	0.75	0.0	0.0	6.14	0.94	5.65	3.0	0.0	0.0	1.0	1.25
Merged-chr6-145196725-1	chr6	145196625	145196825	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177222, intron 6 of 15)	intron (NM_177222, intron 6 of 15)	14245.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	2.42	1.76	4.56	2.41	7.77	6.27	7.31	5.8	0.0	0.0	0.5	2.19
Merged-chr2-151973052-1	chr2	151972952	151973152	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	342.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	9.69	8.05	8.56	4.02	6.95	8.78	9.3	4.32	5.7	5.02	6.03	5.01
Merged-chr1-135789969-1	chr1	135789869	135790069	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9452.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	8.08	4.02	9.13	4.83	3.27	5.64	7.64	5.38	8.85	5.02	6.53	3.76
Merged-chr10-121693257-1	chr10	121693157	121693357	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177335, exon 13 of 13)	3' UTR (NM_177335, exon 13 of 13)	-46673.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.81	1.51	5.13	2.01	6.14	2.2	1.66	3.31	3.34	5.02	3.52	4.7
Merged-chr13-102694303-1	chr13	102694203	102694403	+	609.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	745.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.46	4.02	3.42	4.42	2.86	1.25	3.65	3.0	7.28	10.04	10.55	8.14
Merged-chr3-79592220-2	chr3	79592090	79592290	+	609.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356326, intron 1 of 10)	URR1A|DNA|hAT-Charlie	853.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.4	2.26	1.71	0.0	3.27	8.15	4.65	4.82	9.24	5.02	3.52	5.01
Merged-chr11-76997451-1	chr11	76997351	76997551	+	609.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1146.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	6.06	4.02	4.56	1.61	8.18	5.33	6.64	4.4	5.51	12.05	4.02	1.25
Merged-chr10-80506404-3	chr10	80506310	80506510	+	609.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	11504.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	8.08	4.53	10.84	4.42	6.14	7.84	4.32	4.68	12.19	10.54	11.56	12.22
Merged-chr2-165968403-1	chr2	165968303	165968503	+	609.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24234.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.63	5.53	5.7	2.41	5.32	6.27	4.98	5.58	4.13	2.51	1.51	2.82
Merged-chr7-142894836-2	chr7	142894746	142894946	+	609.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009377, intron 9 of 12)	intron (NM_009377, intron 9 of 12)	5120.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	9.69	2.01	2.28	5.23	4.5	4.7	1.33	6.08	9.44	7.53	3.52	2.82
Merged-chr6-82991581-2	chr6	82991486	82991686	+	609.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	41885.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	10.9	4.02	7.99	2.01	2.45	4.7	3.99	9.9	11.8	9.54	11.56	1.25
Merged-chr10-44470522-2	chr10	44470425	44470625	+	609.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11777.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.27	4.28	5.13	6.03	9.0	3.76	6.64	4.54	8.26	3.01	6.53	6.58
Merged-chr7-127289487-2	chr7	127289379	127289579	+	609.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6781.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	8.88	9.06	5.7	4.83	6.95	12.54	1.33	1.07	9.83	9.04	10.05	7.83
Merged-chr14-70107609-3	chr14	70107500	70107700	+	609.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7507.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	3.23	8.55	9.13	5.63	4.09	5.33	5.65	13.93	9.05	16.07	12.56	10.96
Merged-chr4-108067443-1	chr4	108067343	108067543	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19914.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	10.09	7.8	18.83	8.85	5.32	4.08	8.64	4.91	5.7	3.51	5.53	3.76
Merged-chr7-101653979-1	chr7	101653879	101654079	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9789.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	6.86	3.27	8.56	5.63	6.14	1.88	2.66	4.54	1.18	1.51	1.0	2.51
Merged-chr3-59312141-1	chr3	59312041	59312241	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	32115.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	1.21	3.27	0.0	0.8	5.73	3.14	2.66	5.05	3.54	2.51	1.0	2.51
Merged-chr9-3405733-1	chr9	3405633	3405833	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027545, intron 1 of 17)	Lx2B|LINE|L1	1648.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.81	2.01	2.28	3.22	3.27	5.96	1.66	4.04	3.93	1.51	1.51	1.57
Merged-chr8-39639214-1	chr8	39639114	39639314	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	3464.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	1.21	3.27	0.57	4.02	12.68	8.78	5.65	3.11	6.88	5.52	7.54	3.76
Merged-chr7-14513765-1	chr7	14513665	14513865	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-20839.0	NM_001184981	638251.0	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	0.0	0.0	2.28	0.8	1.64	0.0	5.31	4.26	3.34	0.0	2.51	1.88
Merged-chr7-16396146-1	chr7	16396046	16396246	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5050.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	5.65	4.53	3.42	4.02	0.82	5.02	2.33	6.06	6.1	6.53	6.53	6.27
Merged-chr8-70644232-1	chr8	70644132	70644332	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-11776.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.0	3.52	1.14	1.61	2.45	2.2	0.33	3.42	8.06	5.52	0.5	6.58
Merged-chr10-95261326-1	chr10	95261226	95261426	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	62383.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	8.08	9.81	6.85	4.02	4.91	5.64	3.99	5.94	8.06	6.03	8.04	8.14
Merged-chr13-23580331-1	chr13	23580231	23580431	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1271.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	10.5	4.02	7.99	9.25	7.36	6.9	0.0	0.95	5.9	6.03	1.51	2.82
Merged-chr2-6279281-1	chr2	6279181	6279381	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43476.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	1.62	0.5	3.42	0.0	1.64	0.94	4.98	6.64	0.0	2.01	1.51	1.88
Merged-chr5-63969713-1	chr5	63969613	63969813	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-816.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.25	3.77	2.28	2.82	8.59	1.88	1.0	3.25	5.9	7.53	11.05	7.21
Merged-chr4-53823823-1	chr4	53823723	53823923	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2222.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	2.42	3.02	2.28	3.22	2.05	1.88	4.65	4.01	3.34	4.02	3.52	1.25
Merged-chr3-153725099-1	chr3	153724999	153725199	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011372)	promoter-TSS (NM_011372)	34.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	2.02	7.55	2.28	2.41	3.27	5.64	1.33	6.93	3.93	2.51	3.52	2.82
Merged-chr7-79371616-1	chr7	79371516	79371716	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15411.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	6.06	4.02	4.56	3.62	6.14	4.39	1.33	4.79	4.33	7.03	3.01	3.13
Merged-chr3-52112465-1	chr3	52112365	52112565	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7459.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.85	2.52	1.14	4.83	9.0	1.25	0.66	4.96	3.34	2.01	1.51	4.7
Merged-chr17-84430616-1	chr17	84430516	84430716	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183021, intron 17 of 37)	L1MB8|LINE|L1	35592.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	7.67	4.02	14.83	16.49	0.82	3.76	3.99	6.31	3.93	0.0	7.03	5.95
Merged-chr14-63967718-1	chr14	63967618	63967818	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20062.0	NM_026359	67750.0	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	3.23	4.53	3.99	3.22	9.82	7.84	3.65	4.04	3.34	3.51	3.52	1.57
Merged-chr4-39616663-1	chr4	39616563	39616763	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	166370.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.81	3.52	6.85	0.0	6.14	3.14	2.99	4.82	4.72	1.51	6.03	2.51
Merged-chr9-55429416-2	chr9	55429303	55429503	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 8 of 10)	intron (NM_172923, intron 8 of 10)	82840.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	7.67	6.79	3.99	3.62	0.82	6.9	0.33	4.85	6.88	5.52	4.02	3.45
Merged-chr7-98294375-1	chr7	98294275	98294475	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	L1ME2z|LINE|L1	15167.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.06	1.51	9.7	4.02	1.64	3.76	2.99	4.15	4.13	5.52	2.01	1.88
Merged-chr7-101374288-1	chr7	101374188	101374388	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 3 of 33)	intron (NM_001040111, intron 3 of 33)	-3834.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.62	5.79	2.28	0.4	4.91	10.98	0.66	2.64	12.0	7.03	10.05	8.77
Merged-chr5-117127275-1	chr5	117127175	117127375	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-6313.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.65	2.01	5.7	3.22	6.95	3.14	3.99	5.92	1.38	2.01	10.55	2.19
Merged-chr15-102506614-1	chr15	102506514	102506714	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009582, intron 1 of 13)	B1F|SINE|Alu	4086.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	9.69	2.52	9.7	3.22	2.86	3.14	1.99	3.56	12.39	9.54	12.06	2.82
Merged-chr2-128780441-1	chr2	128780341	128780541	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37862.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.23	3.27	6.28	0.0	2.05	10.35	7.64	3.67	1.38	7.03	3.52	2.51
Merged-chr13-46961968-1	chr13	46961868	46962068	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-32250.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	1.62	2.26	1.71	0.8	2.86	2.2	1.33	2.97	6.29	5.02	10.55	2.19
Merged-chr5-88689756-1	chr5	88689656	88689856	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-13585.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	2.02	4.28	1.14	3.22	5.73	7.84	3.65	4.91	5.9	14.06	10.05	5.64
Merged-chr10-117837626-2	chr10	117837514	117837714	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	8360.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.46	5.79	3.99	2.01	7.77	12.23	5.65	2.78	5.7	5.02	5.53	2.19
Merged-chr4-121040702-1	chr4	121040602	121040802	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007741, intron 1 of 31)	MIR|SINE|MIR	1136.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	2.02	2.01	2.28	1.61	2.45	8.15	3.32	4.04	5.11	10.54	4.52	1.88
Merged-chr19-5798215-1	chr19	5798115	5798315	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-2234.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	2.42	7.29	4.56	6.03	5.32	6.59	0.0	1.09	5.9	5.02	4.52	2.51
Merged-chrX-103565538-1	chrX	103565438	103565638	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028381, intron 9 of 10)	L1_Mus3|LINE|L1	7458.0	NR_030558	100124494.0		NR_030558	ENSMUSG00000065509	Mir421	Mirn421|mmu-mir-421	microRNA 421	ncRNA	0.81	5.03	5.7	3.62	5.32	1.25	5.31	5.36	4.72	12.05	6.03	9.71
Merged-chr5-140536804-2	chr5	140536686	140536886	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28281.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	8.08	0.5	6.28	2.41	2.05	6.27	1.0	3.48	9.24	9.04	10.05	7.52
Merged-chr15-66101676-1	chr15	66101576	66101776	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-124872.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	2.02	3.77	7.42	6.84	6.14	3.14	0.66	5.47	2.95	1.51	1.0	0.94
Merged-chr3-148770557-1	chr3	148770457	148770657	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	184078.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.81	2.52	2.28	3.62	0.82	6.59	1.33	5.05	6.88	4.02	12.56	1.25
Merged-chr11-69443478-1	chr11	69443378	69443578	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081330, intron 63 of 85)	intron (NM_001081330, intron 63 of 85)	-29803.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.85	3.77	2.28	1.61	2.86	5.02	0.33	5.83	6.49	2.51	2.51	1.88
Merged-chr10-22307831-1	chr10	22307731	22307931	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1111.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.46	9.56	4.56	7.24	6.95	5.96	1.99	1.71	0.2	1.0	0.5	0.0
Merged-chr12-73678167-1	chr12	73678067	73678267	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	93371.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	8.08	0.75	1.14	0.8	9.0	8.15	2.33	2.83	4.72	5.02	3.01	2.82
Merged-chr4-89124104-1	chr4	89124004	89124204	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4122.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	4.85	3.27	3.42	0.8	0.82	6.27	1.33	5.07	3.15	16.07	2.01	7.52
Merged-chr7-142534758-1	chr7	142534658	142534858	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011288, intron 1 of 4)	intron (NM_011288, intron 1 of 4)	1641.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	6.46	7.55	14.83	3.22	2.86	5.02	3.32	4.29	5.7	2.51	5.02	15.66
Merged-chr5-110357691-3	chr5	110357554	110357754	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12924.0	NM_001310709	381667.0	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	8.48	6.54	4.56	4.42	2.86	4.08	3.65	2.5	8.85	7.53	10.05	9.08
Merged-chr9-100434056-2	chr9	100433885	100434085	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	52488.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.63	4.02	2.28	2.82	1.23	5.02	3.65	1.43	1.57	6.53	0.5	3.45
Merged-chr19-47460823-1	chr19	47460723	47460923	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	3588.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.83	1.51	5.13	0.8	5.32	5.33	0.66	1.54	2.36	0.5	4.02	0.31
Merged-chr4-32351513-1	chr4	32351413	32351613	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65922.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	1.01	0.0	1.61	0.41	5.02	1.66	4.77	2.16	3.01	2.01	3.45
Merged-chr17-48317237-1	chr17	48317137	48317337	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177083, intron 2 of 5)	URR1A|DNA|hAT-Charlie	1075.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	3.23	3.02	13.12	0.8	3.27	3.14	15.28	6.14	4.52	2.51	7.54	8.46
Merged-chr2-167759729-1	chr2	167759629	167759829	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	68552.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.67	6.54	9.7	13.27	15.55	13.48	13.95	10.68	17.9	8.54	8.54	10.34
Merged-chr9-99416950-1	chr9	99416850	99417050	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008624, intron 1 of 5)	intron (NM_008624, intron 1 of 5)	19762.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	1.62	0.75	3.42	2.01	2.05	0.0	6.64	3.81	0.79	0.5	2.51	0.0
Merged-chr7-52005865-1	chr7	52005765	52005965	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027704)	promoter-TSS (NR_027704)	-151.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	1.26	0.57	0.4	3.68	0.0	3.32	4.68	4.13	2.51	1.51	3.45
Merged-chr2-58932059-1	chr2	58931959	58932159	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	176875.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	6.46	1.76	5.13	5.63	4.5	2.51	5.98	9.2	14.75	11.55	18.09	5.33
Merged-chr12-34664985-1	chr12	34664885	34665085	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-136096.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.65	6.54	2.28	0.8	6.95	4.39	1.66	3.64	8.06	11.05	10.05	5.95
Merged-chr1-134708934-1	chr1	134708834	134709034	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001355726)	promoter-TSS (NM_001355726)	-366.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	7.27	6.79	2.28	0.4	0.41	6.9	3.32	1.37	0.79	1.51	2.51	1.57
Merged-chr1-60745783-1	chr1	60745683	60745883	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-605.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	3.63	4.53	5.7	7.24	4.09	4.7	2.99	5.83	4.52	5.52	3.52	8.77
Merged-chr8-84501367-1	chr8	84501267	84501467	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252060, intron 3 of 47)	(CCCCCA)n|Simple_repeat|Simple_repeat	86003.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	11.31	10.82	14.26	8.45	6.55	2.82	4.32	5.5	7.87	5.02	8.54	2.19
Merged-chr8-82983343-1	chr8	82983243	82983443	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	119987.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.0	0.0	0.57	1.61	0.82	0.31	4.98	3.17	0.98	2.01	2.01	0.31
Merged-chr9-118691516-1	chr9	118691416	118691616	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 14 of 27)	RMER15|LTR|ERVL	-20176.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.21	1.76	3.42	0.0	0.82	0.63	4.32	1.18	2.95	2.01	2.01	0.94
Merged-chr6-97526322-3	chr6	97526207	97526407	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-38487.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	10.09	9.56	9.13	8.04	7.77	5.02	1.33	7.21	11.6	10.04	5.53	5.33
Merged-chr7-36697362-1	chr7	36697262	36697462	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-756.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.23	1.76	0.0	0.8	2.45	3.76	1.33	0.56	8.26	8.03	9.55	5.95
Merged-chr4-136364148-1	chr4	136364048	136364248	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52550.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	5.65	10.06	6.85	0.8	6.55	9.09	9.3	1.15	2.56	5.52	0.0	1.88
Merged-chr2-76620416-1	chr2	76620316	76620516	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27578.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	2.02	2.26	1.14	2.01	2.45	2.51	5.31	4.85	6.49	4.02	4.52	3.13
Merged-chr12-85142944-1	chr12	85142844	85143044	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	8320.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	4.44	3.52	3.99	2.82	1.64	9.09	3.32	4.6	8.06	7.53	9.04	3.45
Merged-chr1-173398778-2	chr1	173398685	173398885	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21819.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.44	9.31	5.7	9.65	0.82	6.59	2.66	4.79	9.05	3.01	10.05	7.83
Merged-chr5-121267131-2	chr5	121267003	121267203	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 7 of 75)	B1F|SINE|Alu	46884.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	2.42	4.78	3.99	4.02	0.82	1.88	4.65	3.14	4.13	13.05	10.05	2.51
Merged-chr14-58076311-1	chr14	58076211	58076411	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013518, intron 1 of 2)	CpG	3625.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.65	2.52	1.14	3.62	2.45	4.08	4.32	5.69	2.56	4.52	2.01	3.45
Merged-chr1-172012199-1	chr1	172012099	172012299	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033509, intron 3 of 7)	intron (NM_033509, intron 3 of 7)	15096.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	2.02	3.02	4.56	6.44	6.55	7.84	1.66	4.99	5.51	4.52	2.01	4.39
Merged-chr15-99284722-1	chr15	99284622	99284822	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081254, intron 2 of 7)	B4A|SINE|B4	2458.0	NM_001081254	545136.0	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	2.42	2.26	2.28	1.61	4.91	7.53	0.33	4.32	4.52	6.03	3.52	10.65
Merged-chr3-132071073-1	chr3	132070973	132071173	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14219.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.42	0.5	3.99	2.01	2.05	8.78	5.65	3.84	5.11	2.51	7.03	4.07
Merged-chr7-133744388-2	chr7	133744287	133744487	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15882.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.85	3.02	2.28	7.24	2.86	6.59	9.3	13.96	5.51	3.01	10.05	11.59
Merged-chr7-46712439-1	chr7	46712339	46712539	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011315, intron 3 of 3)	intron (NM_011315, intron 3 of 3)	-1788.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	3.63	4.28	1.14	4.83	8.59	8.47	6.98	5.3	3.15	6.03	3.01	5.01
Merged-chr15-12092280-1	chr15	12092180	12092380	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-25571.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	2.42	3.27	4.56	0.8	3.68	8.47	1.33	4.51	12.98	10.04	4.02	3.13
Merged-chr11-96849845-3	chr11	96849724	96849924	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019877)	promoter-TSS (NM_019877)	-52.0	NM_019877	56358.0	Mm.22144	NM_019877	ENSMUSG00000018672	Copz2	1110012D12Rik|zeta2-COP	coatomer protein complex, subunit zeta 2	protein-coding	4.85	3.52	8.56	7.24	3.68	5.33	1.99	4.74	11.01	3.51	14.07	9.08
Merged-chr1-86486954-1	chr1	86486854	86487054	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39603.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.4	3.27	2.28	2.01	4.91	4.08	1.99	5.44	2.95	2.01	6.53	5.64
Merged-chr4-6386857-1	chr4	6386757	6386957	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	21177.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.23	1.76	2.85	0.0	6.95	7.53	5.65	5.1	3.34	6.03	1.51	3.13
Merged-chr3-138506831-1	chr3	138506731	138506931	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17449.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	2.42	2.77	5.7	2.41	2.05	5.96	2.99	3.45	3.34	1.0	2.51	1.25
Merged-chr6-122740130-1	chr6	122740030	122740230	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011401, intron 2 of 9)	intron (NM_011401, intron 2 of 9)	2615.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	8.08	3.52	2.28	5.63	5.32	3.76	1.66	6.0	5.51	20.08	8.04	9.08
Merged-chr16-42934980-1	chr16	42934880	42935080	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285805, intron 1 of 10)	L1MB1|LINE|L1	-20600.0	NR_002445	170658.0	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.0	0.0	2.85	0.8	2.45	0.63	3.99	3.98	0.2	1.0	9.04	3.13
Merged-chr13-26812273-1	chr13	26812173	26812373	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42108.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.81	0.5	0.0	2.01	0.0	1.88	1.0	1.15	10.42	7.03	3.52	7.21
Merged-chr17-26779597-1	chr17	26779497	26779697	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1482.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	6.86	6.29	5.13	1.21	5.32	17.87	1.66	6.06	4.52	6.53	6.03	3.13
Merged-chr2-166076014-1	chr2	166075914	166076114	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	79271.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	7.27	1.26	2.85	3.62	2.45	11.29	6.64	1.99	3.34	6.03	4.02	10.34
Merged-chr13-51956043-1	chr13	51955943	51956143	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109368.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.23	7.29	4.56	4.83	8.59	10.35	3.99	5.55	6.88	2.01	9.55	6.27
Merged-chr17-28525085-1	chr17	28524985	28525185	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-5776.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.23	4.78	3.42	4.02	6.14	3.14	1.99	5.58	7.28	11.05	6.53	5.64
Merged-chr9-107708180-1	chr9	107708080	107708280	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011349, intron 1 of 17)	intron (NM_011349, intron 1 of 17)	2295.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	6.46	3.52	1.71	0.0	2.45	6.9	2.33	1.74	8.06	7.03	9.55	3.76
Merged-chr2-147307864-1	chr2	147307764	147307964	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_030769, exon 5 of 6)	non-coding (NR_030769, exon 5 of 6)	54929.0	NR_040330	99041.0	Mm.373081	NR_040330		AI646519	Aspax1|Peat	expressed sequence AI646519	ncRNA	0.0	2.52	0.0	2.82	2.86	3.45	6.98	4.37	0.59	2.01	5.02	2.51
Merged-chr3-96724994-1	chr3	96724894	96725094	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028925, intron 2 of 14)	RMER4A|LTR|ERVK	2445.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	8.88	8.8	3.42	0.0	2.45	5.64	0.0	0.79	6.49	5.02	3.01	1.88
Merged-chr6-134517593-1	chr6	134517493	134517693	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 3 of 22)	L1M4|LINE|L1	49320.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	5.25	1.01	7.99	2.41	6.95	2.2	2.33	5.72	4.52	1.0	9.04	3.13
Merged-chr7-16287229-1	chr7	16287129	16287329	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136471)	promoter-TSS (NM_001136471)	-434.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	3.63	4.02	3.42	3.62	6.14	5.96	0.66	1.4	9.44	4.02	10.55	5.01
Merged-chr1-136559962-3	chr1	136559859	136560059	+	608.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64942.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	2.02	12.58	0.0	5.63	3.27	8.78	8.64	5.38	21.83	9.54	12.06	9.4
Merged-chr7-127774142-2	chr7	127774044	127774244	+	608.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198424, exon 2 of 2)	exon (NM_198424, exon 2 of 2)	-3245.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	6.86	6.29	9.13	8.45	4.91	6.59	5.65	4.77	10.62	9.04	21.61	7.21
Merged-chr10-117081992-2	chr10	117081877	117082077	+	608.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 5 of 9)	(CAAAAA)n|Simple_repeat|Simple_repeat	-18125.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	5.65	8.55	10.84	1.61	11.86	9.72	0.66	5.27	11.21	7.03	9.04	8.77
Merged-chr11-117344013-1	chr11	117343913	117344113	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	11700.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.81	3.02	1.14	4.02	12.68	4.7	7.64	4.51	3.93	4.02	4.02	1.57
Merged-chr5-64506348-1	chr5	64506248	64506448	+	608.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29340.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	4.85	1.76	2.28	2.82	7.77	4.7	4.65	4.37	10.42	10.04	15.07	8.14
Merged-chr1-106712637-1	chr1	106712537	106712737	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177410, exon 1 of 1)	exon (NM_177410, exon 1 of 1)	1653.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	2.83	6.54	6.28	3.22	8.59	6.27	3.32	2.24	6.49	1.0	3.01	5.01
Merged-chr16-4877862-3	chr16	4877760	4877960	+	608.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1991.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	3.23	7.8	13.69	7.24	6.95	7.53	2.33	4.71	9.83	11.55	6.53	6.89
Merged-chr3-104644130-3	chr3	104644019	104644219	+	608.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	5455.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	8.08	10.56	6.28	6.03	9.41	10.35	8.3	4.79	6.1	2.01	10.55	1.88
Merged-chr3-37837506-1	chr3	37837406	37837606	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61307.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	7.67	1.51	3.99	8.85	9.41	6.27	6.64	6.0	4.92	7.03	18.59	4.39
Merged-chr13-5800965-1	chr13	5800865	5801065	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57127.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.86	5.03	0.57	3.22	10.64	5.02	7.31	4.35	6.69	2.01	2.51	6.27
Merged-chr2-152294703-1	chr2	152294603	152294803	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	831.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	4.85	3.27	2.85	3.22	4.09	8.47	4.98	4.12	8.06	5.52	9.55	5.64
Merged-chr10-21712075-2	chr10	21711947	21712147	+	608.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21202.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	2.42	3.02	1.14	2.01	4.5	5.96	4.32	6.11	6.88	3.51	11.05	2.19
Merged-chr10-95509468-2	chr10	95509396	95509596	+	608.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-5666.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	8.88	5.53	3.99	3.22	4.09	5.33	1.0	4.07	7.28	3.01	5.53	1.57
Merged-chr1-37531755-2	chr1	37531643	37531843	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 2 of 15)	L1MB8|LINE|L1	4661.0	NM_001290801	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	6.06	6.29	5.7	5.63	6.14	5.96	0.66	5.27	7.87	8.54	20.6	1.57
Merged-chr1-64223327-1	chr1	64223227	64223427	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101938.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.85	2.77	2.28	1.61	6.14	5.02	7.31	8.27	5.9	8.03	13.06	5.01
Merged-chr19-41847626-2	chr19	41847535	41847735	+	608.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	497.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	11.31	7.04	3.99	6.44	7.36	5.02	4.32	2.86	5.31	2.51	15.07	10.34
Merged-chr2-156530029-1	chr2	156529929	156530129	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001006664, intron 17 of 21)	intron (NM_001006664, intron 17 of 21)	-17547.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	1.62	2.26	1.14	3.22	11.45	1.88	8.64	4.93	3.54	1.0	4.02	3.45
Merged-chr10-15294382-1	chr10	15294282	15294482	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-497395.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	1.62	2.01	6.85	0.8	14.73	7.21	2.99	5.27	9.44	5.52	7.03	2.82
Merged-chr5-102451219-2	chr5	102451088	102451288	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30203.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	2.83	4.78	7.99	5.63	3.68	2.51	4.32	3.25	11.01	7.53	5.53	2.19
Merged-chr11-97662341-2	chr11	97662204	97662404	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1108.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.85	1.51	0.0	0.8	4.5	8.47	1.66	3.17	8.46	5.02	3.01	7.52
Merged-chr5-99336040-2	chr5	99335956	99336156	+	608.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83129.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.23	7.8	7.99	8.85	5.73	11.6	5.65	4.74	10.03	6.03	5.02	10.96
Merged-chr10-81218237-3	chr10	81218120	81218320	+	608.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178662, intron 3 of 12)	intron (NM_178662, intron 3 of 12)	12559.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	12.11	6.79	1.71	4.02	8.18	7.53	7.64	3.56	9.44	19.08	16.08	9.71
Merged-chr14-26645739-2	chr14	26645640	26645840	+	608.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	B3A|SINE|B2	7606.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	9.29	16.1	9.13	0.0	13.5	10.66	5.98	1.65	8.85	5.52	0.5	4.07
Merged-chr11-76457051-2	chr11	76456951	76457151	+	608.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	11414.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.85	5.79	0.0	8.85	10.23	12.23	6.31	4.65	12.39	4.52	3.52	2.82
Merged-chr2-129308116-2	chr2	129308029	129308229	+	608.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040371)	TTS (NR_040371)	1843.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.86	5.28	2.85	5.23	5.73	9.09	3.65	5.33	6.69	10.54	11.05	5.95
Merged-chr7-28351955-3	chr7	28351860	28352060	+	608.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_028129)	TTS (NR_028129)	420.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	4.04	10.06	4.56	5.23	4.5	7.21	5.31	5.66	9.24	8.03	10.55	4.39
Merged-chr11-75465183-1	chr11	75465083	75465283	+	608.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_030711, intron 2 of 2)	intron (NR_030711, intron 2 of 2)	1467.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	10.5	6.79	12.55	6.44	2.05	2.2	3.32	4.09	4.92	3.51	6.53	5.95
Merged-chr12-4874333-3	chr12	4874232	4874432	+	608.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033488)	promoter-TSS (NM_001033488)	27.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	8.08	5.53	3.99	8.04	2.05	5.96	8.3	5.02	5.11	10.04	4.02	9.08
Merged-chr9-13469477-1	chr9	13469377	13469577	+	608.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38116.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.23	2.77	1.71	4.42	4.91	7.53	3.65	4.12	6.1	2.51	1.0	2.82
Merged-chr11-119955197-2	chr11	119955101	119955301	+	608.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12109.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	8.88	6.54	10.27	4.42	10.23	5.33	2.66	6.42	3.74	10.04	7.03	1.88
Merged-chr7-47013470-2	chr7	47013381	47013581	+	608.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5067.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	5.65	6.29	7.99	0.8	2.86	5.02	4.65	7.68	8.85	6.03	10.55	4.39
Merged-chr2-167061874-4	chr2	167061821	167062021	+	608.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-1013.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	5.25	5.28	2.85	0.8	3.68	5.96	3.65	4.12	10.03	6.03	1.51	2.19
Merged-chr18-12144844-1	chr18	12144744	12144944	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024182, intron 7 of 12)	intron (NM_024182, intron 7 of 12)	15994.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	1.62	4.53	2.28	4.83	2.05	1.25	10.96	2.8	6.49	4.02	6.53	3.76
Merged-chr12-28699811-1	chr12	28699711	28699911	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161410, intron 8 of 11)	intron (NM_001161410, intron 8 of 11)	20486.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	6.46	2.52	1.14	1.61	5.73	1.88	5.98	4.57	4.33	3.51	1.51	1.25
Merged-chr11-105967881-1	chr11	105967781	105967981	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207624)	promoter-TSS (NM_207624)	-64.0	NM_001281819	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	3.63	4.53	6.85	10.05	3.27	9.09	3.65	5.83	6.49	3.01	7.54	5.33
Merged-chr6-134141892-1	chr6	134141792	134141992	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	106192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.65	3.77	5.13	4.02	8.59	4.7	8.3	5.41	9.44	5.52	6.53	3.13
Merged-chr18-84442598-1	chr18	84442498	84442698	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	146906.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	6.46	8.05	1.14	6.44	4.5	2.51	7.31	4.96	5.9	5.02	5.02	11.9
Merged-chr3-30600453-1	chr3	30600353	30600553	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	-583.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	6.06	3.77	9.7	2.01	10.64	9.09	3.99	4.46	16.33	10.54	8.04	4.7
Merged-chr11-69516950-1	chr11	69516850	69517050	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	32158.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	5.25	6.29	4.56	6.84	1.23	3.45	5.31	4.63	1.57	4.02	5.53	6.58
Merged-chr2-93850778-1	chr2	93850678	93850878	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-835.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	9.69	2.01	2.85	0.8	3.27	5.02	4.98	7.57	5.11	6.53	0.5	3.76
Merged-chr7-99865408-2	chr7	99865312	99865512	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164258, intron 2 of 18)	intron (NM_001164258, intron 2 of 18)	6194.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	1.62	3.02	2.85	8.04	7.77	4.39	1.33	6.11	6.69	6.53	9.55	4.39
Merged-chr7-132658113-1	chr7	132658013	132658213	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	47470.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	1.62	0.75	3.99	2.82	5.73	6.9	2.66	7.4	3.34	3.01	0.5	5.64
Merged-chr6-115774015-1	chr6	115773915	115774115	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025958)	promoter-TSS (NM_025958)	-542.0	NM_025958	67088.0	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	3.23	2.01	2.28	4.02	9.0	0.0	0.0	5.47	6.29	3.51	2.51	0.63
Merged-chr7-141134334-2	chr7	141134239	141134439	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013782, intron 1 of 11)	intron (NM_013782, intron 1 of 11)	3053.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	6.46	7.8	10.27	4.02	4.91	10.66	8.3	2.5	3.74	11.05	7.03	5.95
Merged-chr18-52760339-1	chr18	52760239	52760439	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER92C|LTR|ERV1	-7472.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	4.04	1.01	5.13	6.44	6.55	4.08	1.99	5.83	2.36	0.5	6.03	1.25
Merged-chrY-90738459-1	chrY	90738359	90738559	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	16591.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.4	1.51	0.0	0.8	2.86	0.31	0.66	0.39	8.26	7.53	8.04	12.22
Merged-chr1-88005196-2	chr1	88005083	88005283	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033291, intron 2 of 27)	intron (NM_001033291, intron 2 of 27)	3368.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	4.04	7.04	1.71	1.61	3.27	6.59	2.66	9.06	8.65	3.01	5.02	6.27
Merged-chr10-30772459-1	chr10	30772359	30772559	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	30867.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.04	2.52	10.27	3.62	3.68	5.33	3.99	7.29	2.95	0.0	4.02	1.88
Merged-chr5-143441976-1	chr5	143441876	143442076	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22517.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	7.67	5.03	3.42	1.61	6.14	5.96	2.66	5.3	7.87	8.54	3.52	2.19
Merged-chr2-156306036-1	chr2	156305936	156306136	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 17 of 17)	B2_Mm2|SINE|B2	-6437.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.46	7.29	5.7	5.63	4.5	6.59	3.32	3.34	9.64	2.51	9.04	3.13
Merged-chr1-64195444-1	chr1	64195344	64195544	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74055.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	1.62	1.51	5.7	4.42	6.55	3.76	5.98	4.65	8.85	7.53	5.53	3.45
Merged-chr6-29170151-2	chr6	29170048	29170248	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5424.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	2.83	6.29	1.14	3.62	5.73	6.9	5.98	4.85	8.06	7.53	9.55	2.82
Merged-chrX-153666938-1	chrX	153666838	153667038	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	29342.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	3.23	3.02	8.56	2.82	3.68	2.82	4.98	4.51	4.92	1.51	8.04	2.82
Merged-chr6-146633839-1	chr6	146633739	146633939	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 1 of 11)	intron (NM_026281, intron 1 of 11)	753.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	1.62	1.51	0.57	4.42	4.91	6.27	5.65	5.83	5.51	8.03	8.04	3.13
Merged-chr9-15305200-1	chr9	15305100	15305300	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199484, intron 1 of 8)	intron (NM_001199484, intron 1 of 8)	967.0	NM_001199485	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	2.83	1.51	0.57	0.4	1.23	5.02	1.99	6.98	3.54	1.51	2.01	4.07
Merged-chr7-136798802-1	chr7	136798702	136798902	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88198.0	NR_046021	621677.0	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	3.63	1.01	0.57	2.41	2.86	2.51	4.65	5.5	3.93	2.01	3.01	1.25
Merged-chr1-119457379-1	chr1	119457279	119457479	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35131.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	3.63	4.53	2.85	7.24	4.91	8.47	4.98	5.02	6.69	5.02	5.02	6.58
Merged-chr19-34724823-2	chr19	34724733	34724933	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	22278.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.04	4.28	5.7	0.8	6.95	5.02	2.99	11.24	9.05	9.54	14.57	4.07
Merged-chr5-31047138-1	chr5	31047038	31047238	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360022, intron 2 of 17)	intron (NM_001360022, intron 2 of 17)	941.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	10.5	3.02	1.71	6.03	8.18	7.21	1.33	4.49	5.31	2.01	2.51	5.64
Merged-chr10-77880566-1	chr10	77880466	77880666	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287074, intron 9 of 11)	intron (NM_001287074, intron 9 of 11)	-12854.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	5.65	12.32	5.7	7.24	4.91	6.9	5.65	4.01	9.24	1.0	7.54	4.7
Merged-chr8-90955427-2	chr8	90955343	90955543	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	23194.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.06	5.03	6.85	6.03	4.09	8.78	1.33	3.45	7.47	12.05	11.56	5.01
Merged-chr18-46378246-1	chr18	46378146	46378346	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66318.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	1.62	2.01	0.57	2.82	0.82	0.31	4.65	4.88	3.15	5.02	5.02	4.39
Merged-chr7-31127659-1	chr7	31127559	31127759	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-636.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	7.27	4.28	5.13	3.22	3.68	8.47	1.99	4.63	3.93	5.02	3.01	5.01
Merged-chr13-15759381-1	chr13	15759281	15759481	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	43249.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	6.06	8.3	0.0	0.4	5.32	6.9	1.33	3.59	1.57	1.0	8.04	5.01
Merged-chr8-70657879-1	chr8	70657779	70657979	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023217, intron 1 of 4)	intron (NM_023217, intron 1 of 4)	1859.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.06	3.02	6.85	1.61	2.86	3.76	0.0	2.1	7.47	0.5	5.02	6.89
Merged-chr4-74231233-1	chr4	74231133	74231333	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11264.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	2.02	6.04	1.71	7.24	6.95	3.45	5.31	5.83	4.72	0.5	8.54	3.45
Merged-chr4-133873839-1	chr4	133873739	133873939	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	G-rich|Low_complexity|Low_complexity	892.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.42	5.03	0.0	0.8	5.32	5.33	1.99	0.84	1.97	3.51	0.5	0.94
Merged-chr4-86667829-1	chr4	86667729	86667929	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	2230.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.83	4.02	10.27	3.22	4.5	9.72	3.65	2.02	4.13	8.54	1.0	1.25
Merged-chr10-87906492-1	chr10	87906392	87906592	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	45381.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	3.02	2.85	3.22	0.0	1.88	5.65	4.63	1.57	2.01	1.51	1.25
Merged-chrX-155256117-2	chrX	155256043	155256243	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6300.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	7.27	6.29	9.13	4.83	3.27	4.7	5.31	4.71	5.9	3.51	6.53	2.19
Merged-chr6-135088044-1	chr6	135087944	135088144	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22382.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	2.42	4.53	1.14	5.23	0.82	1.88	1.99	1.51	3.54	3.01	11.56	4.39
Merged-chr3-75468431-1	chr3	75468331	75468531	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	88421.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	6.46	6.29	6.85	9.25	2.45	0.0	0.0	0.03	0.2	1.0	0.0	0.0
Merged-chr5-99269911-1	chr5	99269811	99270011	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16984.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.02	6.04	2.28	2.82	8.18	4.7	2.66	5.66	6.1	1.51	3.52	3.13
Merged-chr2-163589424-1	chr2	163589324	163589524	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-12890.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	3.63	1.51	2.28	0.4	2.86	7.21	0.0	4.74	3.34	1.0	0.0	3.45
Merged-chr4-102575437-1	chr4	102575337	102575537	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	5377.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.48	5.53	6.85	5.23	3.27	3.14	1.66	1.74	4.92	5.02	5.02	1.57
Merged-chr13-47194939-1	chr13	47194839	47195039	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170643, intron 1 of 7)	intron (NM_001170643, intron 1 of 7)	936.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.62	0.75	3.42	2.41	3.68	0.94	6.98	4.96	4.72	1.0	4.02	2.82
Merged-chr8-14938738-1	chr8	14938638	14938838	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037736, intron 7 of 27)	MTD|LTR|ERVL-MaLR	27075.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	5.25	2.01	2.85	13.67	1.64	6.9	7.97	5.66	3.74	1.51	8.04	2.51
Merged-chr14-105898079-1	chr14	105897979	105898179	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1260.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	7.67	1.26	1.14	3.62	2.05	2.51	6.98	6.31	2.56	2.51	2.01	1.88
Merged-chr6-82752766-1	chr6	82752666	82752866	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21688.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.06	3.52	2.28	1.21	10.64	14.11	3.32	5.02	6.49	3.51	1.0	4.39
Merged-chr9-5345479-2	chr9	5345377	5345577	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009808)	promoter-TSS (NM_009808)	1.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	4.44	8.3	5.13	4.83	7.77	1.25	3.65	5.27	10.62	9.04	8.54	3.76
Merged-chr8-128302535-1	chr8	128302435	128302635	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24310.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.42	5.03	2.85	13.27	6.95	3.14	1.99	4.21	3.54	3.01	8.54	6.89
Merged-chr18-38455783-1	chr18	38455683	38455883	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 5 of 7)	intron (NM_001355749, intron 5 of 7)	36876.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	5.65	0.5	0.57	5.23	8.59	0.63	4.65	4.6	4.13	7.03	6.53	3.13
Merged-chr11-115630620-2	chr11	115630530	115630730	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2335.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	10.9	5.79	8.56	2.82	8.59	14.11	4.65	2.58	11.8	5.02	15.58	10.96
Merged-chr18-84779209-1	chr18	84779109	84779309	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35142.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	4.44	8.05	5.7	2.82	11.86	1.88	6.98	2.78	3.74	3.01	2.51	1.57
Merged-chr13-49199708-1	chr13	49199608	49199808	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12161.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	2.83	5.79	1.71	2.01	1.64	11.6	7.31	1.26	4.92	8.54	7.03	4.39
Merged-chr12-69951254-1	chr12	69951154	69951354	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178628, intron 9 of 14)	Lx7|LINE|L1	-12155.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	3.23	1.51	0.0	1.61	0.82	8.15	1.99	2.19	9.05	8.03	10.55	5.33
Merged-chr10-128188591-1	chr10	128188491	128188691	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6044.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	6.86	3.77	1.14	2.82	2.45	5.02	0.66	2.72	7.87	4.52	3.01	2.19
Merged-chr10-41304280-1	chr10	41304180	41304380	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1039.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	7.27	4.53	1.71	2.41	5.73	6.27	2.33	7.63	5.51	5.52	9.55	7.21
Merged-chr2-128724250-1	chr2	128724150	128724350	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	25335.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.46	0.5	6.85	0.8	2.05	5.64	2.99	4.88	6.49	10.04	0.5	7.52
Merged-chr14-51985524-1	chr14	51985424	51985624	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045728)	TTS (NR_045728)	691.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	2.02	0.5	2.28	2.01	5.73	3.45	5.98	4.71	3.54	3.51	3.52	1.57
Merged-chr1-181273083-1	chr1	181272983	181273183	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-61105.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	8.88	6.79	3.99	3.62	7.36	5.96	4.65	3.56	10.42	6.53	6.53	5.64
Merged-chr11-21570271-1	chr11	21570171	21570371	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	1663.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.81	3.52	2.28	3.62	2.45	3.45	5.31	4.82	4.33	9.54	3.52	2.19
Merged-chr16-32563486-1	chr16	32563386	32563586	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45410.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	9.29	0.5	5.13	2.41	2.86	5.96	2.99	4.32	2.36	4.02	4.02	1.25
Merged-chr9-31253502-1	chr9	31253402	31253602	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17899.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	3.63	0.5	3.42	4.83	3.68	6.27	2.33	4.99	2.56	9.04	4.52	2.51
Merged-chr2-5811168-1	chr2	5811068	5811268	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33866.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.65	5.28	4.56	7.64	6.95	2.82	5.31	4.54	1.77	5.02	2.01	5.95
Merged-chr3-138490685-1	chr3	138490585	138490785	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-1303.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.4	2.01	1.71	0.0	7.36	1.88	0.0	5.16	0.2	4.02	1.51	1.88
Merged-chr3-51939267-1	chr3	51939167	51939367	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	165739.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.02	3.52	10.27	4.02	6.95	2.51	3.32	5.16	3.54	4.52	2.01	1.57
Merged-chr16-94258936-3	chr16	94258832	94259032	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	31359.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	2.83	8.3	7.42	9.25	6.95	6.9	4.32	6.42	11.8	5.02	10.55	7.21
Merged-chr16-77315427-3	chr16	77315353	77315553	+	607.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-13875.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	6.06	9.31	6.28	5.63	10.64	15.37	3.32	5.66	8.85	7.03	11.05	2.82
Merged-chr6-120197064-2	chr6	120196954	120197154	+	607.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347432, intron 1 of 3)	intron (NM_001347432, intron 1 of 3)	3231.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.46	6.54	4.56	8.85	11.45	6.59	6.31	5.21	5.7	6.03	4.52	8.14
Merged-chr6-37390491-2	chr6	37390382	37390582	+	607.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	51666.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	2.42	3.02	4.56	3.62	5.73	6.27	6.31	6.17	8.85	1.51	9.55	3.76
Merged-chr7-123356325-2	chr7	123356236	123356436	+	607.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	13579.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.81	6.79	9.13	13.67	4.09	5.96	3.99	5.41	7.08	3.51	10.55	2.82
Merged-chr4-137964480-1	chr4	137964380	137964580	+	607.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199307, exon 20 of 20)	3' UTR (NM_199307, exon 20 of 20)	-28976.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.21	2.77	0.0	1.21	4.5	4.7	4.32	4.82	3.74	3.51	0.5	3.76
Merged-chr3-69670390-2	chr3	69670231	69670431	+	607.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-51724.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.23	0.5	3.42	0.4	2.05	1.25	5.31	1.6	7.87	8.03	5.02	8.77
Merged-chr2-91921416-3	chr2	91921302	91921502	+	607.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-787.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	6.06	6.79	11.41	7.24	17.59	6.9	5.98	8.27	5.7	11.55	6.53	4.7
Merged-chr12-69574679-2	chr12	69574600	69574800	+	607.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8328.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	4.85	5.03	1.14	8.85	10.64	5.02	4.32	7.01	5.9	6.03	11.56	4.7
Merged-chr7-36690687-2	chr7	36690583	36690783	+	607.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7435.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.81	0.0	0.0	0.8	6.95	6.27	6.64	4.15	12.39	12.55	9.04	7.52
Merged-chr1-152795093-3	chr1	152795037	152795237	+	607.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-5016.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	8.48	9.06	8.56	6.84	0.82	2.82	6.98	3.76	14.16	3.01	8.54	8.46
Merged-chr4-121007462-1	chr4	121007362	121007562	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	9785.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	8.88	2.26	5.7	8.45	6.95	5.02	4.32	5.86	7.08	4.52	5.53	3.45
Merged-chr12-54998744-2	chr12	54998626	54998826	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12390.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	2.83	5.79	5.7	2.01	3.68	8.78	0.66	1.23	8.46	7.03	6.03	2.82
Merged-chr5-123864131-2	chr5	123864053	123864253	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030701, exon 1 of 1)	3' UTR (NM_030701, exon 1 of 1)	1363.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.86	7.55	8.56	2.01	2.86	5.96	4.65	5.78	7.87	9.04	12.06	8.77
Merged-chr19-44554755-2	chr19	44554652	44554852	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026061, intron 2 of 4)	intron (NM_026061, intron 2 of 4)	690.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	7.27	5.03	9.13	3.22	6.55	1.88	9.97	6.28	3.93	13.05	14.07	5.64
Merged-chr9-89067007-2	chr9	89066907	89067107	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25828.0	NM_001170884	666747.0	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	7.27	7.29	2.85	6.84	9.41	4.39	5.98	5.13	0.0	1.0	2.51	1.25
Merged-chr4-110973199-1	chr4	110973099	110973299	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 4 of 12)	L2a|LINE|L2	-441807.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	8.08	6.54	10.27	12.87	0.82	0.0	2.66	8.94	0.79	0.5	5.02	0.63
Merged-chr14-73142443-2	chr14	73142328	73142528	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-82.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.86	4.28	1.71	5.63	3.27	7.21	2.99	3.62	9.05	2.01	6.03	4.7
Merged-chr18-88805035-1	chr18	88804935	88805135	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89172.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	2.02	3.52	8.56	3.22	6.55	1.57	4.32	5.75	9.83	6.53	7.03	7.21
Merged-chr18-36122414-1	chr18	36122314	36122514	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	16211.0	NR_015571	74966.0	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	9.29	6.29	9.7	6.44	7.36	4.39	4.98	4.91	2.56	7.53	6.53	5.95
Merged-chr1-191327104-1	chr1	191327004	191327204	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025864, intron 1 of 7)	(TTTTG)n|Simple_repeat|Simple_repeat	1139.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	9.29	7.29	7.42	3.22	3.68	2.51	7.97	1.29	3.34	3.51	8.54	5.01
Merged-chr9-3025838-1	chr9	3025738	3025938	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	12905.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	7.67	10.82	13.12	10.05	8.59	8.15	8.97	6.98	6.88	14.56	12.56	11.59
Merged-chr3-109238351-2	chr3	109238256	109238456	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102327.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.29	3.27	2.28	8.45	6.55	1.25	2.66	6.0	12.98	0.0	9.55	4.07
Merged-chr11-116619417-3	chr11	116619317	116619517	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	4835.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.44	7.29	4.56	10.86	4.09	10.66	11.96	6.93	8.65	5.52	11.56	6.27
Merged-chr2-129300630-2	chr2	129300531	129300731	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010554, exon 7 of 7)	3' UTR (NM_010554, exon 7 of 7)	3261.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	8.88	10.31	0.57	3.22	1.23	13.48	1.33	1.57	12.39	10.54	10.55	4.39
Merged-chr16-78635481-1	chr16	78635381	78635581	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58793.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	4.85	4.53	3.42	2.82	6.95	9.41	8.64	5.16	8.06	9.04	7.03	5.64
Merged-chr1-143922084-2	chr1	143921982	143922182	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	82067.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	2.83	2.01	3.42	3.22	4.5	5.02	5.31	5.78	10.62	7.03	2.01	4.39
Merged-chr5-110639670-2	chr5	110639568	110639768	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13714.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	9.69	6.79	2.85	7.64	5.73	7.84	6.98	2.44	3.74	6.53	2.51	3.13
Merged-chr17-24797288-1	chr17	24797188	24797388	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-7094.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	4.04	0.0	3.42	1.21	5.32	0.63	7.97	5.44	0.59	7.53	5.53	5.95
Merged-chr8-33931742-2	chr8	33931671	33931871	+	607.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1908.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.44	5.28	3.99	4.02	2.86	6.27	6.64	3.64	10.82	11.55	10.05	5.01
Merged-chr18-23773270-2	chr18	23773166	23773366	+	607.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	1723.0	NR_105778	102465185.0		NR_105778	ENSMUSG00000098607	Mir6360	Gm27296|mmu-mir-6360	microRNA 6360	ncRNA	2.42	3.77	2.28	6.84	12.27	7.84	3.32	8.05	13.77	9.04	8.54	9.4
Merged-chr5-132437114-1	chr5	132437014	132437214	+	607.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	105229.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	5.65	1.51	0.0	1.61	10.23	5.64	7.64	5.55	0.39	4.02	0.0	0.0
Merged-chr5-75929110-1	chr5	75929010	75929210	+	607.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	49318.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	1.62	1.26	0.57	0.0	7.77	5.64	5.98	1.32	0.39	1.0	0.0	0.0
Merged-chr8-125177182-1	chr8	125177082	125177282	+	607.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122987.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.06	3.77	4.56	5.63	8.59	12.86	7.64	6.25	0.0	0.0	0.5	0.63
Merged-chr16-75617761-2	chr16	75617647	75617847	+	607.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	24856.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	10.5	3.02	6.85	2.82	14.73	5.96	2.99	8.55	8.26	3.01	10.05	5.64
Merged-chr16-57200700-1	chr16	57200600	57200800	+	607.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026254, intron 5 of 17)	MIRc|SINE|MIR	771.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.63	1.51	14.83	5.23	9.82	10.03	5.65	5.55	0.79	2.01	2.01	0.0
Merged-chr6-83077849-2	chr6	83077730	83077930	+	607.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_197992)	promoter-TSS (NM_197992)	-560.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	9.29	9.31	11.41	7.64	9.82	7.84	12.95	8.07	5.7	6.53	6.53	10.34
Merged-chr1-189662089-1	chr1	189661989	189662189	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081363, exon 11 of 18)	exon (NM_001081363, exon 11 of 18)	25997.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.44	4.78	2.28	4.02	5.73	5.96	6.64	3.64	3.15	13.56	12.06	4.7
Merged-chr9-105282881-1	chr9	105282781	105282981	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172461, intron 12 of 15)	intron (NM_172461, intron 12 of 15)	112406.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	5.25	9.81	6.85	6.84	2.45	5.64	2.66	4.29	1.18	8.54	2.51	2.82
Merged-chr1-132521003-1	chr1	132520903	132521103	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177129, intron 16 of 22)	intron (NM_177129, intron 16 of 22)	14773.0	NM_029025	74626.0	Mm.34611	NM_029025	ENSMUSG00000048174	Tmem81	4930429O20Rik|AI465369	transmembrane protein 81	protein-coding	6.46	4.78	5.7	2.41	5.73	4.7	2.99	1.68	5.7	10.04	11.56	7.21
Merged-chr6-97518085-1	chr6	97517985	97518185	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-30265.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.75	0.0	0.0	0.0	1.25	0.0	0.08	8.46	1.51	5.02	6.27
Merged-chr5-64354972-1	chr5	64354872	64355072	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112970.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	2.52	2.28	1.21	1.64	2.82	5.31	1.88	1.97	1.51	2.01	4.39
Merged-chr2-105334563-1	chr2	105334463	105334663	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028747, intron 3 of 3)	intron (NM_028747, intron 3 of 3)	64756.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	4.04	5.53	1.14	4.02	1.64	0.63	9.3	5.58	4.13	0.0	2.01	3.45
Merged-chrX-78523283-2	chrX	78523185	78523385	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027322, intron 1 of 3)	intron (NM_027322, intron 1 of 3)	60520.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	10.5	4.53	9.13	12.07	4.91	5.96	4.65	11.21	1.77	3.01	4.52	2.51
Merged-chr8-34147580-1	chr8	34147480	34147680	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-841.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	2.42	2.52	0.0	3.62	2.45	5.02	1.99	1.07	10.03	12.05	4.02	4.7
Merged-chr14-18327188-1	chr14	18327088	18327288	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009455, intron 2 of 5)	CpG	4656.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	3.23	6.79	1.14	3.62	1.23	5.96	6.31	4.04	5.7	3.01	7.03	4.39
Merged-chr4-134081834-1	chr4	134081734	134081934	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162970, exon 11 of 20)	exon (NM_001162970, exon 11 of 20)	13239.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	3.23	2.52	16.54	0.8	3.68	3.45	0.0	2.55	7.08	4.02	3.52	6.89
Merged-chr7-74990404-1	chr7	74990304	74990504	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39807.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	2.02	0.0	10.27	2.82	4.91	2.51	1.0	6.59	2.36	4.02	4.02	2.82
Merged-chr10-70173403-1	chr10	70173303	70173503	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111121, intron 5 of 8)	intron (NM_001111121, intron 5 of 8)	-31261.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	2.42	2.26	5.13	4.42	5.73	3.14	4.98	5.24	4.13	2.01	3.01	3.45
Merged-chr4-101298611-1	chr4	101298511	101298711	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33329.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.23	1.26	5.7	0.4	3.68	1.57	3.99	5.1	5.31	1.51	0.0	2.19
Merged-chr17-42911782-1	chr17	42911682	42911882	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35358.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.46	7.8	5.13	6.84	8.18	4.7	2.66	6.64	11.01	7.03	5.53	3.76
Merged-chr18-41888567-1	chr18	41888467	41888667	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029942, intron 5 of 6)	intron (NM_029942, intron 5 of 6)	62627.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	1.21	1.76	0.0	5.63	1.64	1.57	4.65	4.49	4.13	2.01	2.01	2.51
Merged-chr13-105039862-1	chr13	105039762	105039962	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	15068.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	8.08	1.01	0.0	3.22	2.86	2.51	6.98	4.91	1.97	0.0	0.0	0.0
Merged-chr14-119052561-1	chr14	119052461	119052661	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081252, intron 16 of 38)	ORR1A2-int|LTR|ERVL-MaLR	-46404.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	0.0	1.01	2.28	0.8	2.45	4.08	2.99	4.74	1.97	6.03	1.0	0.0
Merged-chr2-69778859-1	chr2	69778759	69778959	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	10627.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	4.85	3.52	0.0	4.02	6.14	7.21	2.33	4.01	2.16	2.01	3.52	3.45
Merged-chr5-24046444-1	chr5	24046344	24046544	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15754.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	7.67	7.04	7.99	8.04	5.32	0.63	6.31	5.16	13.37	7.53	5.53	3.76
Merged-chr6-121244570-1	chr6	121244470	121244670	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1336.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	1.62	3.02	2.28	6.44	7.77	2.82	2.33	1.68	7.28	7.03	5.02	5.01
Merged-chr6-137690882-1	chr6	137690782	137690982	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR40c|LTR|ERVL	-41597.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.23	1.01	5.7	3.22	2.45	4.7	5.31	4.4	0.79	3.51	1.51	0.63
Merged-chr17-17585996-1	chr17	17585896	17586096	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	38493.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.25	2.77	4.56	1.61	6.95	7.53	4.65	5.36	3.93	7.53	1.51	3.13
Merged-chr16-17881038-1	chr16	17880938	17881138	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109750, intron 1 of 9)	B4A|SINE|B4	10690.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	5.65	0.5	4.56	9.65	3.68	4.08	4.32	5.44	3.15	1.0	8.04	1.25
Merged-chr2-160732126-1	chr2	160732026	160732226	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021280, intron 2 of 33)	CpG-8784	816.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	10.5	6.79	2.28	1.61	4.91	4.08	7.97	5.21	13.96	7.53	8.54	6.58
Merged-chr8-84642149-1	chr8	84642049	84642249	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	20703.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.23	2.52	0.0	0.0	0.82	11.29	6.64	3.56	9.83	11.55	11.56	2.82
Merged-chr17-31685711-2	chr17	31685603	31685803	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7772.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	6.86	8.8	10.84	11.26	6.14	10.66	4.32	5.07	5.9	3.51	6.03	8.77
Merged-chr14-118816765-1	chr14	118816665	118816865	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	28894.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	1.21	3.52	3.42	1.61	3.27	1.57	6.31	4.09	3.54	4.52	3.01	1.57
Merged-chr10-51521665-2	chr10	51521566	51521766	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	30768.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	2.42	2.01	9.13	2.01	1.64	9.09	8.97	5.41	7.87	7.53	8.54	4.39
Merged-chr17-31019651-1	chr17	31019551	31019751	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38043.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	9.69	3.02	1.14	4.42	1.64	5.64	2.99	6.79	7.67	6.03	5.02	2.19
Merged-chr8-71789249-1	chr8	71789149	71789349	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-63568.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	2.02	7.29	13.69	9.65	1.64	3.76	7.31	3.98	5.51	3.51	4.52	8.14
Merged-chr19-41987198-2	chr19	41987106	41987306	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5443.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	5.65	5.53	7.42	4.42	5.73	6.9	2.99	7.99	8.65	3.51	3.52	5.33
Merged-chr1-33945151-1	chr1	33945051	33945251	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	36926.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.04	2.77	2.28	4.02	2.45	3.14	4.65	3.53	0.2	0.0	1.51	0.63
Merged-chr2-158136062-1	chr2	158135962	158136162	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	10330.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.06	7.29	10.27	15.28	13.09	14.11	21.92	12.0	19.08	8.54	14.57	11.59
Merged-chr15-62220184-1	chr15	62220084	62220284	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_003523)	promoter-TSS (NR_003523)	-733.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.44	1.51	3.42	2.82	6.95	1.57	1.66	5.55	1.77	1.0	2.01	2.82
Merged-chr19-9984454-1	chr19	9984354	9984554	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011913)	TTS (NM_011913)	1808.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.25	9.81	4.56	5.63	5.73	3.45	5.31	7.35	8.46	2.51	10.55	5.64
Merged-chr17-29991000-1	chr17	29990900	29991100	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14039.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.65	5.79	5.7	0.4	7.77	8.47	2.66	5.55	9.64	4.02	10.05	11.9
Merged-chr5-28076136-1	chr5	28076036	28076236	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153526, intron 4 of 4)	intron (NM_153526, intron 4 of 4)	4724.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.23	4.02	0.0	4.02	0.82	6.9	4.65	5.07	10.03	5.02	3.52	3.76
Merged-chr16-76227535-1	chr16	76227435	76227635	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	104922.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	9.69	4.53	10.27	6.03	2.45	4.39	0.0	5.38	8.06	3.01	5.02	3.76
Merged-chr18-32173079-1	chr18	32172979	32173179	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	A-rich|Low_complexity|Low_complexity	9990.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.23	2.52	5.7	2.41	6.14	3.76	3.32	6.28	7.28	3.51	8.04	8.77
Merged-chr4-98056840-1	chr4	98056740	98056940	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010905, intron 7 of 10)	URR1A|DNA|hAT-Charlie	279214.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.81	1.01	0.0	3.22	5.32	1.57	4.98	4.68	2.56	2.51	4.52	1.25
Merged-chr5-101828107-1	chr5	101828007	101828207	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	62977.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	6.86	9.31	0.0	3.22	3.68	5.64	3.32	2.33	8.46	8.03	0.0	2.82
Merged-chr4-128973844-2	chr4	128973750	128973950	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11395.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	7.67	3.27	13.12	6.03	12.68	5.33	4.65	5.72	4.92	12.55	10.05	8.77
Merged-chr4-55817633-1	chr4	55817533	55817733	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-285158.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.25	0.5	3.42	4.02	5.73	5.64	2.66	5.41	7.47	2.01	3.01	3.76
Merged-chr1-33994394-1	chr1	33994294	33994494	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-17431.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.06	2.26	3.99	6.44	2.45	5.96	4.98	5.44	0.79	2.51	7.54	2.82
Merged-chr18-55341740-1	chr18	55341640	55341840	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-349149.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.63	0.5	3.42	4.83	6.55	4.08	3.65	7.54	0.0	1.51	6.03	0.94
Merged-chr13-74341258-3	chr13	74341149	74341349	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023281, intron 3 of 14)	intron (NM_023281, intron 3 of 14)	8991.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	12.92	5.79	4.56	12.07	2.86	5.02	5.65	6.7	9.64	2.51	9.55	7.52
Merged-chr4-88419589-1	chr4	88419489	88419689	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025760, intron 6 of 6)	intron (NM_025760, intron 6 of 6)	19337.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.04	2.26	0.0	10.46	1.23	6.9	4.65	5.75	10.03	2.01	4.02	5.64
Merged-chr10-125419022-2	chr10	125418920	125419120	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90057.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	2.02	4.53	1.71	3.22	4.09	5.96	3.65	4.54	8.85	5.52	8.54	8.77
Merged-chr8-105605666-2	chr8	105605549	105605749	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	CpG	420.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	8.08	6.54	7.42	4.02	3.68	6.59	5.65	6.36	8.26	12.05	11.05	7.52
Merged-chr5-123171822-1	chr5	123171722	123171922	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008277)	TTS (NM_008277)	10901.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	12.11	6.04	6.85	0.8	6.95	15.37	6.31	6.11	9.83	6.53	5.53	4.7
Merged-chr11-19954577-1	chr11	19954477	19954677	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	30135.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.23	6.54	3.42	4.02	9.41	9.72	5.65	4.26	5.7	10.54	2.01	2.51
Merged-chr16-90142411-1	chr16	90142311	90142511	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	174.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	4.04	0.75	2.85	4.42	5.73	4.7	8.64	4.29	3.74	0.0	5.02	7.21
Merged-chr7-100230780-1	chr7	100230680	100230880	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	3173.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	6.86	2.52	7.42	2.41	7.36	1.25	2.66	5.07	4.72	0.5	1.51	3.13
Merged-chr4-40303650-2	chr4	40303543	40303743	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9589.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	2.83	2.77	1.71	3.62	3.27	2.2	5.31	6.42	7.87	2.01	7.54	3.45
Merged-chr17-5561390-1	chr17	5561290	5561490	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	68790.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.04	2.26	1.14	4.83	3.68	7.84	3.99	6.22	4.33	5.02	3.52	1.88
Merged-chr14-55491541-1	chr14	55491441	55491641	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155104, intron 1 of 38)	intron (NR_155104, intron 1 of 38)	471.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	2.42	4.02	3.99	0.4	6.14	1.25	0.0	4.68	1.77	5.02	3.01	3.76
Merged-chr3-37657068-1	chr3	37656968	37657168	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	17121.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	10.09	2.01	11.41	3.62	1.64	3.14	1.66	2.5	6.88	2.01	3.01	1.57
Merged-chr7-75456375-1	chr7	75456275	75456475	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 1 of 36)	intron (NM_029332, intron 1 of 36)	841.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	7.67	3.02	2.85	2.82	4.5	4.39	3.32	8.78	8.06	10.54	11.05	5.95
Merged-chr5-129786071-1	chr5	129785971	129786171	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133900, intron 1 of 7)	intron (NM_133900, intron 1 of 7)	1182.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	6.46	6.54	5.13	3.22	5.73	6.9	2.33	6.56	5.31	6.03	5.02	4.07
Merged-chr10-99271194-1	chr10	99271094	99271294	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7963.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.65	5.79	6.85	7.24	8.18	8.78	2.33	4.15	4.92	4.52	6.03	1.88
Merged-chr3-157634592-2	chr3	157634510	157634710	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	67718.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	9.29	4.53	9.13	7.24	4.09	5.96	0.66	6.84	4.33	4.52	16.58	3.45
Merged-chr5-136251214-1	chr5	136251114	136251314	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291238, intron 20 of 22)	intron (NM_001291238, intron 20 of 22)	-6274.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	4.44	2.01	6.85	1.21	6.55	3.14	1.99	2.21	8.26	8.03	3.52	9.08
Merged-chr8-72584456-1	chr8	72584356	72584556	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357280, intron 4 of 4)	intron (NM_001357280, intron 4 of 4)	12633.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	6.06	2.01	4.56	8.04	0.0	0.63	0.0	0.76	7.28	9.54	11.56	8.14
Merged-chr11-47776051-1	chr11	47775951	47776151	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-396749.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.81	2.01	0.0	3.62	4.09	5.96	8.3	5.38	6.49	7.53	8.54	1.57
Merged-chr6-56860387-1	chr6	56860287	56860487	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012056, intron 5 of 9)	intron (NM_012056, intron 5 of 9)	28328.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.4	1.51	0.0	3.22	6.14	0.94	3.65	6.48	2.16	0.0	2.51	0.94
Merged-chr8-77421791-1	chr8	77421691	77421891	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95265.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.46	4.28	2.28	4.02	2.45	4.39	0.66	4.82	4.33	4.02	1.51	0.0
Merged-chr6-17359489-1	chr6	17359389	17359589	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51849.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.81	3.52	5.7	0.0	0.41	2.82	4.65	7.07	4.13	0.5	3.52	2.19
Merged-chr11-54921164-2	chr11	54921088	54921288	+	606.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18334.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	5.25	4.02	2.85	15.69	4.91	6.9	8.3	5.1	4.92	4.52	3.52	9.08
Merged-chr5-143465548-2	chr5	143465446	143465646	+	606.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1053.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	2.42	4.78	1.14	2.41	4.5	9.41	7.97	4.77	9.05	7.03	8.04	6.58
Merged-chr11-117655465-1	chr11	117655365	117655565	+	606.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	CpG	1176.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	7.67	6.54	6.28	6.84	9.0	10.98	7.31	5.92	5.51	2.51	2.01	4.7
Merged-chr12-111912066-2	chr12	111911997	111912197	+	606.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-4042.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.81	1.26	1.71	3.22	6.14	7.53	7.64	4.18	11.01	7.53	4.52	12.53
Merged-chr19-47510670-1	chr19	47510570	47510770	+	606.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-2312.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	7.27	1.26	0.0	1.61	0.82	7.21	5.65	5.19	2.16	1.51	8.54	5.64
Merged-chr1-35850336-1	chr1	35850236	35850436	+	606.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-218064.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	9.69	7.04	2.28	11.26	0.0	0.0	1.66	1.93	3.15	0.0	0.0	1.88
Merged-chr13-5787302-3	chr13	5787206	5787406	+	606.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70786.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	9.69	11.82	2.28	0.8	2.86	13.17	3.32	5.94	15.34	10.04	11.05	2.82
Merged-chr12-52292161-2	chr12	52292062	52292262	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	188447.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.44	1.01	0.0	4.83	1.23	3.14	5.31	8.13	9.83	1.51	10.05	6.58
Merged-chr5-43887579-1	chr5	43887479	43887679	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	18770.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.62	0.75	0.57	5.63	6.14	4.39	3.65	7.46	6.69	9.04	8.54	4.7
Merged-chr7-43278092-1	chr7	43277992	43278192	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35208.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.04	7.04	5.7	1.21	5.73	26.34	8.64	5.1	6.88	10.04	5.02	1.88
Merged-chr8-22478868-2	chr8	22478771	22478971	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-1992.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	2.83	4.02	3.42	2.82	5.73	5.33	2.33	7.6	8.46	2.01	8.54	7.21
Merged-chr11-106762662-2	chr11	106762558	106762758	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11432.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	1.62	7.29	10.27	4.83	4.91	5.64	1.0	7.26	2.36	1.51	2.01	5.95
Merged-chr9-70323479-1	chr9	70323379	70323579	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 7 of 27)	intron (NM_181072, intron 7 of 27)	82274.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	2.42	0.0	1.14	2.41	5.73	5.64	1.66	6.34	7.28	5.02	4.52	2.82
Merged-chr15-76472668-2	chr15	76472554	76472754	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	4615.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	5.65	8.55	10.27	2.82	3.27	5.33	1.66	3.53	6.29	0.5	1.51	5.01
Merged-chr2-103063095-2	chr2	103062992	103063192	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	10421.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	8.08	6.54	1.14	4.02	2.86	6.59	3.32	4.68	7.87	7.03	13.57	3.45
Merged-chr2-14604211-2	chr2	14604096	14604296	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023116)	promoter-TSS (NM_023116)	-110.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	4.44	6.54	5.13	4.02	9.0	9.09	6.31	6.03	8.06	4.02	9.55	2.51
Merged-chr7-4151517-1	chr7	4151417	4151617	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021454, exon 3 of 3)	exon (NM_021454, exon 3 of 3)	-1645.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	2.02	5.53	5.7	3.22	7.36	3.14	4.98	4.21	4.33	5.52	5.53	4.7
Merged-chr4-26444008-1	chr4	26443908	26444108	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-97356.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	1.62	2.26	0.0	0.8	4.09	5.96	4.65	4.85	5.11	0.0	4.52	0.31
Merged-chr5-139024071-2	chr5	139023985	139024185	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29132.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	3.23	5.03	5.7	5.23	5.73	4.7	2.33	6.11	8.26	12.05	3.01	3.76
Merged-chr6-48645822-2	chr6	48645734	48645934	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	4.04	6.04	3.99	2.41	5.32	2.82	4.32	4.96	7.47	11.05	5.53	6.27
Merged-chr9-35116050-1	chr9	35115950	35116150	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029475)	promoter-TSS (NR_029475)	-678.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.65	5.79	7.42	0.0	4.5	5.33	4.32	4.79	3.74	13.56	12.06	4.7
Merged-chr14-67941108-2	chr14	67941013	67941213	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7541.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	13.33	6.04	15.97	4.83	3.27	4.08	5.65	6.28	4.72	6.03	9.04	2.51
Merged-chr2-118772331-1	chr2	118772231	118772431	+	606.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145644)	promoter-TSS (NM_001145644)	-438.0	NM_001145644	53906.0	Mm.36777	NM_025308	ENSMUSG00000046804	Phgr1	1810007E14Rik|AA238765	proline/histidine/glycine-rich 1	protein-coding	1.62	4.78	5.7	1.21	3.68	4.39	1.0	1.18	10.62	0.0	8.54	5.01
Merged-chr2-48615889-3	chr2	48615802	48616002	+	606.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198207.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.46	5.53	13.69	6.44	5.32	14.74	10.96	4.54	6.88	12.55	13.57	7.21
Merged-chr10-96267822-1	chr10	96267722	96267922	+	606.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41615.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.06	4.28	11.41	11.26	7.36	8.78	8.97	5.05	3.34	1.0	2.01	1.57
Merged-chr3-39175080-1	chr3	39174980	39175180	+	606.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	288140.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.81	0.0	0.0	1.61	0.0	1.25	1.33	1.29	11.21	10.04	8.54	8.14
Merged-chr2-80275258-2	chr2	80275136	80275336	+	606.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17234.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	5.65	6.04	6.28	9.65	2.45	5.02	6.31	5.52	3.93	3.51	1.51	4.07
Merged-chr9-70208267-2	chr9	70208160	70208360	+	606.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	910.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	5.25	8.05	5.7	7.64	5.73	7.84	6.64	5.92	7.67	3.01	4.52	9.71
Merged-chr10-80171107-2	chr10	80171021	80171221	+	606.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007705, exon 7 of 7)	3' UTR (NM_007705, exon 7 of 7)	-1823.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	8.48	12.32	1.14	4.42	6.14	5.02	6.98	5.36	8.65	6.53	12.56	6.89
Merged-chr1-87006633-2	chr1	87006530	87006730	+	606.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 14 of 21)	intron (NM_001172157, intron 14 of 21)	83298.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	8.88	6.04	15.4	13.67	6.55	5.64	2.66	4.57	8.06	2.51	7.54	5.01
Merged-chr1-50962775-1	chr1	50962675	50962875	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	35252.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.4	1.26	0.0	0.0	7.36	3.14	5.98	4.91	0.59	2.51	3.01	1.88
Merged-chr6-128841061-1	chr6	128840961	128841161	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14746.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.85	5.79	4.56	0.8	3.68	19.76	3.99	1.37	12.98	11.05	5.02	7.21
Merged-chr2-153215613-1	chr2	153215513	153215713	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9828.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.81	2.01	2.85	0.0	6.14	5.02	2.66	4.91	7.67	3.51	8.04	2.19
Merged-chr8-120596126-2	chr8	120596034	120596234	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7059.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.85	7.29	3.42	6.44	5.32	10.35	1.33	3.95	4.92	10.54	7.03	6.89
Merged-chr9-103364375-1	chr9	103364275	103364475	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175833, intron 1 of 4)	intron (NM_175833, intron 1 of 4)	604.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.63	7.55	5.13	10.46	4.5	5.33	5.98	3.67	6.1	8.03	5.53	4.7
Merged-chr14-54766427-1	chr14	54766327	54766527	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	15459.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	2.83	3.77	6.85	7.24	2.45	5.96	2.33	7.68	0.39	1.51	0.0	1.88
Merged-chr12-44273613-1	chr12	44273513	44273713	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	4459.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	6.06	5.79	7.42	3.22	5.32	7.84	6.31	6.5	6.88	4.02	2.51	2.19
Merged-chr17-24360099-1	chr17	24359999	24360199	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013855, intron 2 of 32)	intron (NM_013855, intron 2 of 32)	8076.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.81	1.26	9.13	2.01	6.14	5.02	4.65	4.4	3.54	2.51	7.54	4.07
Merged-chr16-97540387-1	chr16	97540287	97540487	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	4304.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	6.86	4.02	5.7	1.61	7.36	1.88	2.99	6.36	5.31	3.01	5.02	3.76
Merged-chr4-33467268-1	chr4	33467168	33467368	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	29187.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	3.23	1.26	3.42	4.83	2.86	7.84	3.99	6.84	6.49	5.52	4.02	1.25
Merged-chr11-75456574-1	chr11	75456474	75456674	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1857.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	2.42	2.52	7.99	6.03	6.14	5.64	1.99	7.37	5.51	3.01	4.52	6.58
Merged-chr14-62868293-1	chr14	62868193	62868393	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2751.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	2.83	2.26	5.7	7.24	0.82	2.2	5.98	4.29	3.74	2.01	5.53	3.76
Merged-chr19-55231393-1	chr19	55231293	55231493	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	9843.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	7.67	5.53	5.13	3.22	4.91	5.02	1.33	5.33	6.69	2.01	3.01	8.46
Merged-chr6-115647547-1	chr6	115647447	115647647	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	28341.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	3.77	3.42	2.82	0.41	2.51	4.98	7.43	3.34	1.0	4.02	4.07
Merged-chr18-14812408-1	chr18	14812308	14812508	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001100449, intron 6 of 14)	CT-rich|Low_complexity|Low_complexity	29163.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	2.83	2.52	0.0	0.0	8.18	5.64	3.32	6.0	9.05	4.52	8.04	1.88
Merged-chr5-113724653-1	chr5	113724553	113724753	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033216, exon 1 of 3)	non-coding (NR_033216, exon 1 of 3)	119.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	3.23	5.53	1.14	5.63	4.91	5.96	4.98	6.08	7.87	11.05	12.56	2.51
Merged-chr18-62171637-1	chr18	62171537	62171737	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	8344.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.85	6.79	9.13	1.61	11.45	13.48	0.66	0.08	2.16	6.03	2.01	0.0
Merged-chr10-95780464-1	chr10	95780364	95780564	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-160199.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	2.83	4.78	1.14	7.24	3.27	5.02	8.97	4.77	3.74	3.51	8.54	3.76
Merged-chr2-34742850-1	chr2	34742750	34742950	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	RSINE1|SINE|B4	12382.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	5.79	1.14	0.0	2.86	5.02	3.65	3.31	9.44	3.51	11.56	5.95
Merged-chr6-87017094-1	chr6	87016994	87017194	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020045, intron 3 of 7)	B3A|SINE|B2	7258.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.0	1.76	2.28	4.83	9.82	10.98	8.64	3.17	6.49	3.01	5.02	2.51
Merged-chr18-36508594-1	chr18	36508494	36508694	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7211.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.46	9.06	4.56	2.82	2.86	12.86	6.31	4.85	4.33	4.52	2.51	0.31
Merged-chr3-34664221-1	chr3	34664121	34664321	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015580, intron 4 of 4)	CpG	14226.0	NM_011443	20674.0	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	1.62	0.0	0.57	0.8	0.82	1.57	6.31	5.61	0.2	0.5	0.5	0.94
Merged-chr3-8734980-1	chr3	8734880	8735080	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67942.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.63	2.77	5.7	5.23	6.95	3.14	2.66	4.99	2.56	2.51	4.02	2.51
Merged-chr7-16463432-1	chr7	16463332	16463532	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008718, intron 5 of 11)	intron (NM_008718, intron 5 of 11)	10653.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	9.29	2.01	2.28	3.22	5.32	4.7	3.32	5.07	9.64	7.03	6.03	5.01
Merged-chr17-36997287-1	chr17	36997187	36997387	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3876.0	NM_001168502	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	4.85	4.78	2.28	3.62	1.64	4.7	6.31	3.79	3.74	1.0	5.02	2.19
Merged-chr7-99974783-1	chr7	99974683	99974883	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	5675.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	2.83	0.5	2.85	1.61	11.05	7.21	5.65	3.28	1.57	5.02	1.51	0.0
Merged-chr15-62252307-1	chr15	62252207	62252407	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132747, intron 4 of 4)	intron (NR_132747, intron 4 of 4)	-32856.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	3.63	2.52	5.7	1.61	5.73	3.14	1.99	3.36	11.6	7.53	8.54	7.21
Merged-chr1-157047060-1	chr1	157046960	157047160	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61590.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.4	2.52	4.56	4.83	3.68	4.39	6.31	5.86	6.49	0.5	2.51	0.63
Merged-chr17-73971013-1	chr17	73970913	73971113	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20817.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	8.88	2.52	1.71	3.62	12.27	4.39	18.6	9.48	10.42	14.06	19.09	9.4
Merged-chr10-91191527-1	chr10	91191427	91191627	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19908.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.44	4.78	3.42	4.83	2.45	3.76	4.32	3.93	3.15	4.52	3.01	5.95
Merged-chr18-77784595-1	chr18	77784495	77784695	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9955.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	3.23	1.76	1.14	2.01	0.82	5.64	2.66	5.33	2.75	0.0	1.0	2.82
Merged-chr18-81536335-1	chr18	81536235	81536435	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	455745.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	1.21	4.28	10.27	4.42	2.45	5.33	2.99	5.41	6.29	6.03	8.04	6.58
Merged-chr13-91133517-1	chr13	91133417	91133617	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	90470.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	3.27	4.56	5.63	4.09	3.14	3.65	4.88	4.92	2.51	11.05	4.7
Merged-chr4-155153027-1	chr4	155152927	155153127	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66423.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.63	2.52	0.0	0.8	7.36	3.14	1.33	2.64	2.56	3.01	4.02	3.13
Merged-chr7-142060486-1	chr7	142060386	142060586	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001347560, exon 1 of 5)	5' UTR (NM_001347560, exon 1 of 5)	367.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	4.04	3.52	4.56	2.01	7.77	2.82	9.3	4.01	3.34	7.53	7.03	6.89
Merged-chr17-53485872-1	chr17	53485772	53485972	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025887, intron 2 of 5)	MLTR11A|LTR|ERVK	6638.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	3.63	2.52	2.28	1.61	4.09	2.82	3.32	9.84	0.39	12.05	8.54	8.77
Merged-chr6-124359525-1	chr6	124359425	124359625	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-2439.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	3.63	2.52	3.42	2.82	11.05	9.41	3.32	6.08	5.11	3.01	2.01	1.25
Merged-chr7-75753641-1	chr7	75753541	75753741	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029332, exon 37 of 37)	3' UTR (NM_029332, exon 37 of 37)	-94697.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	1.62	2.52	2.85	1.21	6.95	1.57	4.65	2.21	2.95	1.0	2.01	2.19
Merged-chr16-75676029-1	chr16	75675929	75676129	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83138.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	2.02	3.02	5.7	2.41	3.68	5.64	0.0	4.91	5.31	1.0	4.52	1.88
Merged-chr1-82795514-2	chr1	82795404	82795604	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27048.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	3.23	2.26	0.57	2.82	0.82	2.51	3.99	5.66	7.87	9.54	3.52	8.77
Merged-chr16-87405192-1	chr16	87405092	87405292	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081068, intron 17 of 29)	ORR1B1|LTR|ERVL-MaLR	27414.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	5.65	4.53	4.56	4.42	9.41	7.21	3.32	3.11	4.33	2.01	18.09	3.13
Merged-chr8-108599924-1	chr8	108599824	108600024	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15247.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	5.65	0.75	6.85	5.23	4.91	3.76	1.0	5.52	7.47	4.52	3.52	5.33
Merged-chr12-104131610-1	chr12	104131510	104131710	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3614.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	4.04	0.0	2.85	2.41	7.77	7.84	1.66	4.49	6.49	6.53	5.53	2.19
Merged-chr16-4914297-1	chr16	4914197	4914397	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24814.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	1.62	0.25	1.71	0.8	4.5	1.57	3.99	3.79	3.74	3.51	0.5	0.94
Merged-chr15-93274363-1	chr15	93274263	93274463	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	816.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	1.62	2.52	4.56	0.0	6.14	1.88	2.66	4.74	7.87	5.02	11.05	4.39
Merged-chr2-68451263-2	chr2	68451171	68451371	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	20710.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.04	6.54	11.41	6.44	2.86	5.33	4.98	7.68	6.1	2.51	2.51	2.51
Merged-chr2-166655918-1	chr2	166655818	166656018	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57914.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.81	4.78	9.13	2.41	3.68	8.15	0.33	5.75	4.33	6.53	4.02	3.45
Merged-chr16-76429622-1	chr16	76429522	76429722	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55795.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	1.01	0.0	0.0	3.68	7.21	8.64	3.25	6.1	3.51	3.01	3.13
Merged-chr10-122008427-1	chr10	122008327	122008527	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38888.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.63	0.25	0.0	3.22	0.0	7.21	4.98	3.45	1.57	5.02	2.01	0.0
Merged-chrX-77602732-1	chrX	77602632	77602832	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	RMER15|LTR|ERVL	72720.0	NM_001101585	628893.0	Mm.477437	NM_001101585		Cldn34-ps	EG628893|Gm6927	claudin 34, pseudogene	protein-coding	4.44	7.04	1.14	3.22	6.14	9.41	3.65	5.3	6.69	6.53	8.54	5.64
Merged-chr11-104432031-2	chr11	104431934	104432134	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	10257.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.81	1.51	2.28	2.01	8.18	1.25	4.65	5.19	10.42	0.5	8.04	7.21
Merged-chr6-134043783-3	chr6	134043697	134043897	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	8097.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	21.4	9.31	3.42	1.61	10.23	10.98	1.0	2.64	16.13	6.53	10.55	7.21
Merged-chr17-83681035-1	chr17	83680935	83681135	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25128.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.46	6.04	10.84	7.64	2.05	1.57	5.31	0.28	2.75	0.0	0.0	3.13
Merged-chr19-25607446-1	chr19	25607346	25607546	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3091.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	2.02	1.51	0.0	0.0	0.0	7.21	3.99	4.15	1.38	1.0	2.51	1.57
Merged-chr1-16106567-1	chr1	16106467	16106667	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133832, intron 1 of 5)	intron (NM_133832, intron 1 of 5)	685.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.83	7.04	11.41	1.61	6.95	2.82	4.65	7.18	4.72	3.51	6.03	2.19
Merged-chr2-31731088-1	chr2	31730988	31731188	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-28851.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	3.23	4.78	7.99	7.24	8.59	6.59	3.32	5.5	13.77	1.51	4.52	4.7
Merged-chr7-43407770-1	chr7	43407670	43407870	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-510.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	11.71	3.52	1.14	0.8	3.27	4.39	4.32	1.46	10.03	12.55	11.56	8.14
Merged-chr7-96411051-1	chr7	96410951	96411151	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	LTR85c|LTR|Gypsy?	-69087.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.44	0.5	3.42	8.85	2.86	0.0	4.65	7.49	0.79	0.5	2.01	2.19
Merged-chr11-77100289-1	chr11	77100189	77100389	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176965, intron 17 of 17)	intron (NM_176965, intron 17 of 17)	-21852.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	4.85	6.79	6.85	3.22	0.82	6.27	2.66	4.63	5.7	8.03	5.53	5.95
Merged-chr13-30658471-1	chr13	30658371	30658571	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-1588.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	3.23	3.27	2.85	3.22	4.91	0.94	1.66	4.15	8.26	4.52	7.03	1.57
Merged-chr4-88702453-1	chr4	88702353	88702553	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11185.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	2.02	2.52	1.14	0.0	4.09	1.25	4.98	4.6	1.77	3.51	1.51	0.0
Merged-chr7-112226635-1	chr7	112226535	112226735	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	799.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.42	1.01	2.28	3.22	1.64	2.51	3.99	6.31	0.79	3.01	1.51	0.94
Merged-chr9-65188763-1	chr9	65188663	65188863	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25927.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	2.02	5.79	2.28	2.01	5.73	4.39	0.66	4.15	9.64	4.02	13.57	3.76
Merged-chr1-60979602-1	chr1	60979502	60979702	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017480, intron 1 of 4)	L2b|LINE|L2	1688.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.02	3.27	0.0	5.63	1.64	2.51	4.65	4.57	6.49	5.02	4.02	3.76
Merged-chr5-149015479-1	chr5	149015379	149015579	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8517.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	6.86	6.54	2.28	6.84	3.27	2.82	6.98	4.43	2.95	6.03	6.03	2.82
Merged-chr15-97760177-2	chr15	97760075	97760275	+	605.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177810, intron 6 of 27)	intron (NM_001177810, intron 6 of 27)	7491.0	NM_001177810	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	4.85	6.54	4.56	2.82	7.77	1.88	8.97	3.62	6.49	0.5	4.52	6.27
Merged-chr2-35349409-2	chr2	35349310	35349510	+	605.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12401.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.06	6.79	7.99	4.42	10.64	7.84	3.65	7.37	7.67	11.55	12.06	5.95
Merged-chr4-44071951-2	chr4	44071822	44072022	+	605.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	795.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	3.63	5.53	6.28	8.04	4.09	3.14	7.97	3.76	2.56	1.51	12.06	5.01
Merged-chr9-71155608-2	chr9	71155509	71155709	+	605.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 1 of 6)	ORR1G|LTR|ERVL-MaLR	7024.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	5.65	1.26	8.56	6.84	6.14	5.33	5.31	6.06	4.13	4.52	11.05	8.46
Merged-chr10-10355758-1	chr10	10355658	10355858	+	605.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127353, intron 30 of 36)	intron (NM_001127353, intron 30 of 36)	116556.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	10.09	2.52	3.42	1.61	6.55	10.98	4.32	5.24	3.15	4.52	6.03	4.39
Merged-chr4-64497903-3	chr4	64497812	64498012	+	605.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-221309.0	NR_151546	102633436.0	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	10.9	16.1	9.13	13.67	13.91	8.15	5.31	57.31	8.26	8.03	7.03	10.96
Merged-chr11-44498568-1	chr11	44498468	44498668	+	605.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20396.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	8.08	6.79	14.83	11.26	3.27	5.64	3.32	2.07	6.49	5.02	4.52	2.51
Merged-chr1-135639973-1	chr1	135639873	135640073	+	605.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	42197.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	1.62	1.01	0.0	1.61	8.18	4.7	2.66	5.69	3.54	7.53	7.03	8.14
Merged-chr8-83333273-1	chr8	83333173	83333373	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-787.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	4.04	1.01	0.0	4.83	6.14	5.33	2.99	5.61	4.13	2.51	4.52	4.7
Merged-chr17-83213569-2	chr17	83213473	83213673	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1710.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	4.85	4.78	3.99	3.22	4.5	7.21	1.99	3.81	9.83	9.54	6.03	2.19
Merged-chr16-93798001-2	chr16	93797921	93798121	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027293, intron 27 of 36)	RLTR40|LTR|ERVK	-3120.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.81	4.02	7.42	5.63	0.82	3.14	5.31	5.94	9.44	3.51	3.52	9.4
Merged-chr15-79691190-1	chr15	79691090	79691290	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013818, intron 1 of 11)	CpG	294.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	6.06	10.06	13.69	8.85	9.82	10.03	7.64	2.69	10.62	12.05	13.57	7.21
Merged-chr9-32520933-1	chr9	32520833	32521033	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	20519.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.86	0.75	3.42	4.02	1.64	8.47	5.31	4.6	1.57	7.53	0.5	1.25
Merged-chr1-92978891-2	chr1	92978777	92978977	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022320)	promoter-TSS (NM_022320)	-26.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	1.62	2.52	1.71	2.41	10.23	6.9	1.33	5.47	5.7	8.03	12.06	6.58
Merged-chr9-64749502-2	chr9	64749399	64749599	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11743.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	9.29	3.52	2.28	0.0	9.41	6.27	1.99	5.27	7.87	5.02	9.55	3.76
Merged-chr1-171284009-2	chr1	171283905	171284105	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013919, exon 7 of 13)	exon (NM_013919, exon 7 of 13)	-2819.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	6.46	12.32	1.14	3.22	2.86	8.15	9.63	3.79	8.65	5.02	11.56	1.88
Merged-chr7-27592635-1	chr7	27592535	27592735	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1083.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	6.86	4.78	4.56	4.42	4.09	5.64	4.98	4.32	10.03	8.54	5.02	4.39
Merged-chr1-153807645-2	chr1	153807557	153807757	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	36484.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	1.62	7.04	3.42	9.25	3.68	2.51	4.65	4.57	5.31	10.04	6.53	2.19
Merged-chr2-58919914-1	chr2	58919814	58920014	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	164730.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.04	2.26	0.57	4.42	7.36	5.64	2.33	5.05	2.36	2.51	4.02	4.7
Merged-chr14-10432337-1	chr14	10432237	10432437	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	21121.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	2.42	2.01	1.14	4.83	6.95	2.51	5.31	4.99	6.69	3.51	7.03	1.25
Merged-chr11-102774100-3	chr11	102774015	102774215	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009613, intron 14 of 26)	CpG	12680.0	NM_001110778	11488.0	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	8.48	11.32	5.13	10.05	2.86	11.6	6.64	5.27	6.88	4.02	3.01	5.01
Merged-chr12-29693921-2	chr12	29693819	29694019	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	Lx|LINE|L1	-7474.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	1.62	1.01	2.28	6.84	3.27	0.31	5.65	6.48	7.08	5.02	10.05	8.46
Merged-chr6-115836079-2	chr6	115835976	115836176	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110506, intron 1 of 8)	ORR1A3|LTR|ERVL-MaLR	2336.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	4.85	9.06	5.13	3.22	6.95	5.96	3.32	6.28	8.65	10.54	4.02	8.46
Merged-chr3-37302895-1	chr3	37302795	37302995	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9551.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	4.44	1.26	4.56	6.44	7.36	5.64	3.65	5.07	3.54	3.01	13.57	3.76
Merged-chr3-94581452-1	chr3	94581352	94581552	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	1264.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.81	1.76	5.7	6.44	6.55	4.39	4.32	6.56	5.31	6.03	0.0	2.82
Merged-chr9-66856720-2	chr9	66856610	66856810	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-22004.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.44	2.01	5.13	3.22	4.5	5.02	1.66	5.19	8.85	1.51	11.05	3.13
Merged-chr3-127633428-3	chr3	127633292	127633492	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009718, exon 1 of 2)	5' UTR (NM_009718, exon 1 of 2)	256.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	9.29	6.04	3.42	10.05	7.36	5.64	6.64	4.54	8.06	6.53	5.02	6.58
Merged-chr3-18613543-1	chr3	18613443	18613643	+	605.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-133066.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	1.21	4.02	1.14	6.03	6.14	10.35	12.95	5.21	1.18	6.53	5.02	4.07
Merged-chr6-39056074-3	chr6	39055971	39056171	+	605.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	11515.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	8.48	7.04	7.99	4.83	0.82	5.96	8.3	4.4	14.36	7.53	9.55	6.89
Merged-chr1-51648196-1	chr1	51648096	51648296	+	605.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51478.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0.81	1.51	1.14	0.8	3.27	0.0	0.0	0.36	5.51	11.05	10.05	10.02
Merged-chr10-78370487-1	chr10	78370387	78370587	+	605.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18787.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	4.04	4.53	7.42	1.21	6.14	10.35	1.99	1.85	8.65	11.55	12.06	5.01
Merged-chr1-154677914-3	chr1	154677824	154678024	+	605.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009782, intron 3 of 46)	intron (NM_009782, intron 3 of 46)	47996.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	2.83	5.79	11.41	11.66	7.36	7.84	3.99	5.16	9.83	11.05	5.02	7.83
Merged-chr8-115564744-1	chr8	115564644	115564844	+	605.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	142150.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	1.62	0.25	8.56	4.83	9.0	4.08	4.32	5.07	3.15	6.53	4.52	1.25
Merged-chr4-133469283-1	chr4	133469183	133469383	+	605.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10850.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.46	5.28	4.56	3.22	7.36	3.45	4.98	5.33	8.65	3.01	4.02	5.01
Merged-chr2-121448426-2	chr2	121448323	121448523	+	605.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-775.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	4.04	5.28	4.56	5.63	9.0	8.78	5.98	5.16	9.44	5.02	9.55	9.08
Merged-chr12-17808766-2	chr12	17808665	17808865	+	605.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117956.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.63	3.77	3.99	6.03	4.5	12.23	5.31	4.46	10.03	10.04	8.04	7.21
Merged-chr13-119613291-2	chr13	119613125	119613325	+	605.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10594.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.81	2.26	0.0	2.41	4.09	2.82	1.33	5.1	1.77	2.51	2.51	6.27
Merged-chr5-34549380-3	chr5	34549277	34549477	+	605.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145859)	promoter-TSS (NM_001145859)	-199.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.46	6.54	3.99	9.65	9.0	4.08	0.66	4.54	12.59	8.03	8.54	9.08
Merged-chr19-24990155-2	chr19	24990079	24990279	+	605.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	-9350.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	8.88	4.02	10.27	4.02	5.73	5.02	7.64	5.8	10.23	13.05	14.57	8.77
Merged-chr5-134187542-3	chr5	134187449	134187649	+	605.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359852, intron 1 of 14)	B3|SINE|B2	3511.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	9.69	7.04	4.56	10.46	7.77	13.48	3.65	5.78	15.74	10.04	9.55	5.64
Merged-chr17-46484269-1	chr17	46484169	46484369	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001162864, exon 2 of 15)	5' UTR (NM_001162864, exon 2 of 15)	3406.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	4.44	8.05	3.42	1.61	3.68	9.41	1.0	1.29	3.54	4.02	11.56	6.89
Merged-chr9-122906758-1	chr9	122906658	122906858	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001353989, intron 2 of 2)	intron (NM_001353989, intron 2 of 2)	3512.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	0.4	1.01	5.7	0.0	2.45	0.0	0.0	0.0	6.29	11.05	9.55	4.07
Merged-chr11-119547729-1	chr11	119547629	119547829	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045099)	promoter-TSS (NR_045099)	91.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	3.63	2.77	2.28	3.22	5.32	0.63	0.66	2.55	3.34	2.51	4.02	2.19
Merged-chr19-57571950-1	chr19	57571850	57572050	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-39084.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	5.65	10.06	9.13	6.44	5.73	1.88	6.31	2.75	7.28	8.54	6.53	3.76
Merged-chr14-103472409-1	chr14	103472309	103472509	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40932.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.42	2.26	3.42	5.63	5.73	1.57	0.33	3.34	6.88	7.03	5.02	7.52
Merged-chr1-85840529-2	chr1	85840433	85840633	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	46516.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	4.85	5.03	6.85	8.04	12.68	8.78	4.32	4.09	12.39	6.53	13.06	6.58
Merged-chr9-69125479-1	chr9	69125379	69125579	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-164362.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.81	7.55	3.99	10.46	4.09	3.45	3.99	5.52	0.79	2.01	0.0	0.63
Merged-chr1-85544884-1	chr1	85544784	85544984	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	53926.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	9.69	8.3	17.11	6.44	9.82	5.64	1.99	2.52	0.0	3.01	3.52	0.63
Merged-chr10-8807989-1	chr10	8807889	8808089	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	78081.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.02	2.01	11.41	8.04	5.73	2.51	4.65	9.42	1.77	2.51	0.0	0.94
Merged-chr10-59943531-2	chr10	59943460	59943660	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8210.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	2.42	1.51	3.42	0.0	5.32	7.53	0.33	0.81	5.7	9.04	9.04	2.82
Merged-chr9-118623559-1	chr9	118623459	118623659	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	Lx8|LINE|L1	16850.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.81	1.76	3.42	2.41	3.27	4.7	1.99	5.58	8.26	3.01	7.54	2.19
Merged-chr4-48278796-1	chr4	48278696	48278896	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	793.0	NM_029572	76299.0	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	4.44	1.01	4.56	3.22	7.36	1.88	5.31	4.96	2.95	6.03	6.53	3.76
Merged-chr2-93588277-1	chr2	93588177	93588377	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54157.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.02	5.79	5.13	5.23	9.0	3.14	5.31	5.41	7.47	1.0	5.53	3.45
Merged-chr6-52802356-1	chr6	52802256	52802456	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173406, intron 3 of 4)	intron (NM_173406, intron 3 of 4)	88191.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	2.42	2.52	1.14	2.41	6.55	2.2	2.66	5.55	3.93	3.01	4.02	5.01
Merged-chr3-109353207-1	chr3	109353107	109353307	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12524.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.23	1.26	5.7	1.61	3.68	5.02	0.0	5.13	1.97	2.51	5.02	0.94
Merged-chr11-89026849-2	chr11	89026749	89026949	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27446.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	14.94	4.28	7.99	8.04	10.64	4.7	5.31	4.85	6.1	7.53	6.53	5.01
Merged-chr12-79638124-2	chr12	79638025	79638225	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	286608.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	8.88	8.05	9.13	4.02	9.82	5.02	1.33	2.8	11.8	6.03	11.05	3.13
Merged-chr10-41489091-1	chr10	41488991	41489191	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009213, intron 3 of 9)	intron (NM_009213, intron 3 of 9)	1249.0	NM_009213	20598.0	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	4.04	5.53	0.57	0.0	5.73	9.09	8.3	4.09	8.06	7.53	2.51	4.39
Merged-chr7-125583458-1	chr7	125583358	125583558	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19971.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.83	3.27	4.56	3.22	4.5	3.45	4.65	4.71	1.38	2.01	4.02	3.76
Merged-chr11-88012871-1	chr11	88012771	88012971	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-14573.0	NM_001168471	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	7.67	9.56	5.7	9.25	5.73	4.08	2.99	5.24	16.13	5.52	3.01	6.58
Merged-chr6-32539279-1	chr6	32539179	32539379	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	28138.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.85	2.52	2.28	2.41	5.73	11.92	1.99	5.16	4.92	1.51	1.0	2.82
Merged-chr8-94177840-1	chr8	94177740	94177940	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1249.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.81	2.52	2.28	3.22	6.55	1.25	0.33	5.5	3.15	3.51	0.0	4.7
Merged-chr15-56696147-1	chr15	56696047	56696247	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1601.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	3.23	0.5	2.28	2.41	6.55	6.59	0.0	4.21	3.74	7.53	2.01	0.31
Merged-chr4-141571425-1	chr4	141571325	141571525	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25263.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	1.62	1.01	3.42	2.41	1.23	5.64	1.66	4.63	0.59	1.0	0.5	0.0
Merged-chr11-84613245-1	chr11	84613145	84613345	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	87585.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	4.04	6.29	9.7	4.83	4.5	5.02	1.33	8.16	1.77	3.01	8.54	3.76
Merged-chr4-114908297-1	chr4	114908197	114908397	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030721)	promoter-TSS (NR_030721)	601.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	2.83	4.02	2.28	5.63	2.05	3.76	1.33	3.42	7.47	12.55	3.52	10.65
Merged-chr1-9903139-1	chr1	9903039	9903239	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177547)	TTS (NM_177547)	-5499.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	5.65	4.02	0.0	2.01	1.64	6.27	1.99	3.39	1.18	1.0	0.5	2.51
Merged-chr15-36152137-1	chr15	36152037	36152237	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081253, exon 4 of 5)	exon (NM_001081253, exon 4 of 5)	-11737.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	4.85	6.29	2.85	4.42	4.91	6.9	6.98	5.36	3.34	2.01	4.02	9.08
Merged-chr17-10727893-1	chr17	10727793	10727993	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	112298.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	1.62	1.51	1.14	1.61	2.45	5.02	5.31	4.68	0.0	1.0	1.51	0.0
Merged-chr15-50784272-1	chr15	50784172	50784372	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	104777.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	1.51	3.99	0.8	6.95	3.14	1.66	4.91	4.72	6.53	6.03	2.19
Merged-chr17-33941383-1	chr17	33941283	33941483	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020603, intron 3 of 14)	intron (NM_020603, intron 3 of 14)	660.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	6.46	9.31	3.99	7.24	2.86	12.23	4.32	2.8	3.34	1.51	2.01	0.63
Merged-chr11-51615345-1	chr11	51615245	51615445	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4428.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	6.04	7.99	1.61	5.32	9.41	1.66	2.72	10.82	5.02	3.52	4.39
Merged-chr4-55118046-1	chr4	55117946	55118146	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	170101.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	1.62	3.27	0.0	0.0	4.09	5.33	1.66	4.93	0.59	1.0	0.0	0.0
Merged-chr2-102925121-1	chr2	102925021	102925221	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23456.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.42	5.53	3.42	1.61	15.14	8.15	1.66	4.01	7.67	3.51	8.04	5.33
Merged-chr2-167633137-1	chr2	167633037	167633237	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	1.62	2.77	4.56	2.41	3.27	5.33	1.66	4.01	6.49	3.01	4.02	10.02
Merged-chr3-9714186-1	chr3	9714086	9714286	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-104101.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.42	3.02	4.56	4.42	2.86	3.76	5.98	5.13	1.38	10.04	6.03	3.76
Merged-chr12-101959405-1	chr12	101959305	101959505	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1162.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	10.9	5.53	8.56	5.23	3.27	3.14	2.33	5.21	8.06	4.52	6.53	9.71
Merged-chr3-55333758-1	chr3	55333658	55333858	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	91394.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	2.01	5.13	5.23	1.64	1.25	0.0	3.0	8.26	4.02	8.04	5.01
Merged-chr16-44332681-1	chr16	44332581	44332781	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001159419, exon 1 of 26)	5' UTR (NM_001159419, exon 1 of 26)	157.0	NM_198034	320007.0	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	1.62	2.01	1.71	0.0	2.86	0.94	3.65	2.66	3.93	3.01	4.02	2.51
Merged-chr11-77795345-1	chr11	77795245	77795445	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-5953.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.81	2.52	0.57	4.83	2.86	5.02	2.66	3.87	0.2	2.01	1.0	4.7
Merged-chr11-115278038-1	chr11	115277938	115278138	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1069.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	1.62	3.52	1.14	2.01	2.45	5.96	3.65	3.9	2.36	1.0	2.01	1.57
Merged-chr11-116027434-1	chr11	116027334	116027534	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2882.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	1.21	5.03	2.28	2.41	2.86	7.21	3.65	1.12	9.44	5.02	3.01	5.95
Merged-chr15-25692477-1	chr15	25692377	25692577	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 2 of 40)	PB1D10|SINE|Alu	-60729.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.23	5.28	2.28	5.23	6.55	4.7	6.64	3.42	0.79	4.02	5.53	3.76
Merged-chr5-72863642-1	chr5	72863542	72863742	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	4806.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	3.02	3.42	3.62	0.82	2.51	6.64	3.98	2.75	1.51	0.5	2.51
Merged-chr15-84617105-1	chr15	84617005	84617205	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR41A2|LTR|ERV1	-46101.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	4.85	6.79	3.42	4.02	1.23	4.7	1.33	6.73	4.13	4.02	5.02	4.07
Merged-chr14-24245563-1	chr14	24245463	24245663	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_027726, exon 1 of 31)	5' UTR (NM_027726, exon 1 of 31)	357.0	NM_001163513	71228.0	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	2.83	2.01	1.14	1.61	0.0	7.53	5.31	4.77	1.18	3.01	2.51	2.51
Merged-chr2-163601940-1	chr2	163601840	163602040	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-374.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	6.86	4.02	6.85	4.02	2.45	5.64	0.33	4.12	2.16	3.51	4.02	3.13
Merged-chr18-38393757-1	chr18	38393657	38393857	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER33|DNA|hAT-Charlie	-25150.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.63	1.26	4.56	7.24	4.91	3.14	3.99	4.01	1.97	6.03	2.51	2.51
Merged-chr9-105804075-1	chr9	105803975	105804175	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 1 of 36)	ID_B1|SINE|B4	5573.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.0	0.5	1.71	4.42	0.82	0.31	5.98	4.26	0.0	0.5	0.0	0.0
Merged-chr4-148760375-2	chr4	148760276	148760476	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	-44016.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	6.46	6.29	4.56	8.04	3.27	5.96	3.32	5.55	1.97	0.5	7.03	1.25
Merged-chr2-70092885-1	chr2	70092785	70092985	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177376, intron 2 of 34)	MLT2B1|LTR|ERVL	53759.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	1.62	0.75	8.56	0.8	2.86	1.57	6.64	4.21	1.57	1.51	3.01	0.94
Merged-chr11-101604696-1	chr11	101604596	101604796	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6004.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	4.85	3.52	4.56	4.83	13.5	4.7	3.99	7.01	3.93	7.03	7.54	6.58
Merged-chr4-63897363-1	chr4	63897263	63897463	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36079.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	5.65	3.52	1.14	8.45	3.68	3.76	6.64	9.17	1.77	5.52	4.52	4.07
Merged-chr7-141578550-1	chr7	141578450	141578650	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1|LTR|ERVL-MaLR	16370.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	3.23	4.53	0.0	2.82	6.55	8.47	1.66	4.91	5.31	3.01	9.55	4.7
Merged-chr17-45751604-1	chr17	45751504	45751704	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17098.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	3.02	2.28	1.61	5.73	0.63	2.33	4.85	10.62	7.03	2.01	4.07
Merged-chr13-113417724-1	chr13	113417624	113417824	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85120.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	1.21	3.02	0.0	1.61	2.45	4.7	5.98	3.42	4.52	12.05	1.0	3.13
Merged-chr10-68141008-3	chr10	68140896	68141096	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	137730.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.65	0.75	12.55	8.04	1.64	5.33	4.32	6.76	8.06	8.03	6.03	2.19
Merged-chr16-90045789-1	chr16	90045689	90045889	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71090.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.42	2.01	5.13	4.83	6.95	1.25	2.66	5.86	4.52	4.52	12.56	6.58
Merged-chr13-51737151-1	chr13	51737051	51737251	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	MIRb|SINE|MIR	56596.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	2.42	4.78	3.99	1.21	4.5	6.9	1.33	5.1	3.15	0.5	7.03	1.25
Merged-chr15-25332321-1	chr15	25332221	25332421	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	81443.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.25	6.29	9.13	8.45	1.64	0.0	3.32	1.49	2.36	1.0	2.01	2.19
Merged-chr17-46773981-1	chr17	46773881	46774081	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_025966)	TTS (NM_025966)	1346.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	2.83	9.56	3.42	3.22	1.64	4.08	3.65	1.54	5.7	15.57	7.54	5.95
Merged-chr17-83058065-1	chr17	83057965	83058165	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045094, intron 2 of 3)	intron (NR_045094, intron 2 of 3)	20160.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	5.65	7.04	0.0	9.65	1.64	0.31	1.66	2.41	0.0	0.0	1.0	0.94
Merged-chr1-39505936-1	chr1	39505836	39506036	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27181.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	3.23	1.51	2.28	7.24	9.41	2.2	6.31	7.12	3.54	1.51	1.0	5.01
Merged-chr6-129033618-3	chr6	129033520	129033720	+	604.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12281.0	NR_024263	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	9.29	8.05	3.99	6.03	6.55	6.59	3.99	5.44	7.28	3.51	14.07	1.57
Merged-chr10-116515319-3	chr10	116515215	116515415	+	604.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	12634.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	10.5	5.03	5.13	3.62	8.18	8.78	4.32	8.21	6.49	7.03	10.05	8.14
Merged-chr5-36811608-2	chr5	36811530	36811730	+	604.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008550, intron 15 of 18)	intron (NM_008550, intron 15 of 18)	-14876.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	3.23	3.77	6.85	3.22	4.91	5.33	4.98	6.03	7.08	4.52	10.05	1.88
Merged-chr9-22051946-2	chr9	22051829	22052029	+	604.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010487)	promoter-TSS (NM_010487)	94.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	7.27	7.29	0.0	2.41	5.32	5.96	1.99	3.9	3.74	12.05	3.52	7.21
Merged-chr5-21514960-2	chr5	21514861	21515061	+	604.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 17 of 20)	ID_B1|SINE|B4	-28566.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	5.65	5.53	7.99	5.23	4.91	0.94	3.99	5.92	4.13	10.54	10.55	6.58
Merged-chr8-11253709-2	chr8	11253626	11253826	+	604.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-59079.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.04	8.05	5.7	6.44	5.32	5.96	7.64	3.9	6.29	6.03	17.59	5.64
Merged-chr4-83288776-1	chr4	83288676	83288876	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	ORR1D2|LTR|ERVL-MaLR	35413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.62	2.77	2.28	2.82	5.73	5.64	3.65	4.32	2.36	3.51	4.02	1.57
Merged-chr14-51247586-1	chr14	51247486	51247686	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8526.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	7.27	2.26	1.14	2.01	5.32	5.96	2.66	4.35	0.0	0.0	0.0	0.31
Merged-chr8-34963233-1	chr8	34963133	34963333	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	2457.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.02	4.78	2.28	2.82	5.32	10.35	3.99	4.91	4.52	2.51	2.01	3.13
Merged-chr15-74938835-1	chr15	74938735	74938935	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16216.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.85	3.52	4.56	2.41	5.73	4.7	3.99	5.92	1.77	0.5	3.01	1.25
Merged-chr11-105474544-2	chr11	105474459	105474659	+	604.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17824.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	7.67	7.29	10.27	14.88	6.55	5.02	4.65	8.33	8.85	4.52	5.53	11.59
Merged-chrX-159837598-2	chrX	159837485	159837685	+	604.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 5 of 16)	intron (NM_021389, intron 5 of 16)	-2883.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	3.63	3.27	2.85	4.83	15.55	8.47	6.98	3.42	8.65	7.53	9.55	10.34
Merged-chr2-119106788-2	chr2	119106676	119106876	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6041.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	2.83	6.29	3.99	2.41	6.95	4.08	5.31	6.84	2.75	12.05	14.57	3.13
Merged-chr4-21679213-1	chr4	21679113	21679313	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080771, exon 4 of 4)	exon (NM_001080771, exon 4 of 4)	6750.0	NM_001080771	230025.0	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	7.27	1.51	4.56	2.01	1.23	5.64	5.65	5.83	1.77	0.5	4.52	3.13
Merged-chr16-55888018-3	chr16	55887927	55888127	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	7252.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	6.86	5.79	2.85	9.25	10.23	2.2	6.31	3.39	10.23	12.55	4.02	3.13
Merged-chr8-123360785-1	chr8	123360685	123360885	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172287, intron 9 of 14)	intron (NM_172287, intron 9 of 14)	-12926.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	2.42	5.28	3.42	4.83	6.55	6.59	5.31	12.64	12.78	5.52	5.53	5.64
Merged-chr8-83994382-1	chr8	83994282	83994482	+	604.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008854, intron 8 of 9)	B1_Mur4|SINE|Alu	-3290.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	4.44	1.26	1.14	2.01	1.64	4.7	3.99	1.65	12.19	6.53	4.02	7.83
Merged-chr6-53286410-2	chr6	53286329	53286529	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-874.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	1.62	4.02	3.99	6.84	3.27	6.27	3.32	5.1	0.2	11.05	6.53	1.57
Merged-chr2-30196842-2	chr2	30196738	30196938	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356475, intron 1 of 13)	intron (NM_001356475, intron 1 of 13)	9009.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	2.02	3.02	5.13	4.02	3.68	5.96	4.65	7.23	4.72	8.03	12.56	5.95
Merged-chr7-140903416-1	chr7	140903316	140903516	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2648.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	1.21	6.54	0.0	0.8	2.86	8.15	6.64	4.82	5.31	3.01	5.53	7.21
Merged-chr5-81021492-1	chr5	81021392	81021592	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	-101.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.44	5.03	7.42	8.85	8.18	0.31	4.98	4.93	1.57	6.53	1.0	4.07
Merged-chr13-46701706-1	chr13	46701606	46701806	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175749, exon 12 of 22)	exon (NM_175749, exon 12 of 22)	26143.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	4.85	6.04	2.28	9.25	8.18	2.51	5.31	5.27	5.7	2.51	6.03	1.57
Merged-chr15-103550162-1	chr15	103550062	103550262	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-12170.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	1.62	2.77	1.14	3.22	4.5	5.64	1.0	3.03	4.92	1.0	4.02	3.45
Merged-chr2-28180269-2	chr2	28180163	28180363	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-12830.0	NM_001038613	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	12.52	4.53	6.85	8.04	1.64	5.33	4.98	9.79	5.11	1.0	4.02	2.82
Merged-chr13-77005819-1	chr13	77005719	77005919	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 17 of 20)	Lx8b|LINE|L1	129649.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	2.02	2.26	2.28	4.02	0.82	6.59	5.31	4.96	0.2	0.5	0.5	1.25
Merged-chr6-125074131-1	chr6	125074031	125074231	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	2854.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	2.42	0.25	0.0	5.63	6.14	5.33	3.65	4.4	3.54	9.54	1.51	6.27
Merged-chr2-66141099-1	chr2	66140999	66141199	+	604.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16306.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.23	3.52	2.28	3.62	2.45	6.9	0.66	3.39	11.41	13.05	10.55	4.7
Merged-chr5-21676141-2	chr5	21676035	21676235	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359964, intron 2 of 4)	intron (NM_001359964, intron 2 of 4)	25261.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	10.5	3.77	2.85	4.83	10.64	4.39	7.31	6.11	8.85	8.03	7.03	5.33
Merged-chr3-32616401-1	chr3	32616301	32616501	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001348062)	promoter-TSS (NM_001348062)	189.0	NM_001348104	14696.0	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	2.02	8.05	9.7	6.44	6.55	2.82	3.65	2.64	5.9	5.52	2.51	5.01
Merged-chr14-122474361-1	chr14	122474261	122474461	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045046, intron 2 of 4)	CpG	838.0	NR_045046	69248.0	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	3.23	1.01	2.28	0.8	3.27	0.94	3.99	2.33	1.97	2.01	3.01	3.45
Merged-chr14-54569189-2	chr14	54569095	54569295	+	604.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010590, intron 7 of 7)	intron (NM_010590, intron 7 of 7)	8466.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	7.67	9.56	14.83	12.47	3.68	6.59	4.32	4.93	5.31	5.52	8.54	7.83
Merged-chr3-104030980-2	chr3	104030893	104031093	+	604.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133853, intron 15 of 21)	intron (NM_133853, intron 15 of 21)	-62677.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	12.52	6.04	10.27	4.02	5.73	2.51	3.65	9.17	6.69	2.01	4.02	6.27
Merged-chr13-93990483-1	chr13	93990383	93990583	+	604.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67313.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.65	3.02	2.28	2.41	6.95	4.39	3.65	5.66	10.62	4.52	2.01	1.57
Merged-chr3-34035001-1	chr3	34034901	34035101	+	604.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	14922.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	4.04	5.53	7.99	3.22	6.55	5.96	5.65	5.66	7.67	1.51	9.04	3.45
Merged-chr2-58485210-3	chr2	58485122	58485322	+	604.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	76188.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	7.67	5.53	7.99	13.27	8.59	2.2	1.99	9.64	9.44	10.04	6.03	7.52
Merged-chrX-135797356-3	chrX	135797240	135797440	+	604.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026081, intron 6 of 10)	intron (NM_026081, intron 6 of 10)	-11123.0	NR_035497	100316820.0		NR_035497	ENSMUSG00000088464	Mir1970	mmu-mir-1970	microRNA 1970	ncRNA	11.31	14.84	5.7	8.04	9.0	10.66	12.95	11.66	11.01	7.03	16.58	5.64
Merged-chr15-66899861-3	chr15	66899738	66899938	+	604.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	8445.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	4.85	6.04	7.99	8.45	6.55	3.14	4.32	9.42	10.62	6.03	7.54	7.52
Merged-chr9-70783419-2	chr9	70783313	70783513	+	604.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	104431.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	2.83	1.01	7.99	5.23	10.64	21.01	5.65	6.42	8.85	7.03	9.04	9.4
Merged-chr7-96408838-2	chr7	96408733	96408933	+	604.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-66869.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.65	3.02	10.27	7.24	9.0	1.88	6.31	6.67	1.57	4.52	0.0	0.63
Merged-chr14-76051396-1	chr14	76051296	76051496	+	604.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40531.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	6.86	6.79	4.56	9.25	7.36	3.45	5.65	2.38	8.65	10.54	14.07	10.96
Merged-chr5-146804556-2	chr5	146804439	146804639	+	604.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9583.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.63	5.28	4.56	13.27	3.68	5.02	2.66	4.93	9.05	3.51	8.04	6.58
Merged-chr4-22384077-2	chr4	22383983	22384183	+	604.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172988, intron 3 of 8)	Lx7|LINE|L1	26540.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	1.26	3.42	6.03	1.23	4.08	9.3	5.24	4.52	13.56	13.06	4.07
Merged-chr13-54824410-2	chr13	54824285	54824485	+	604.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34980.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	1.62	8.55	5.13	7.64	5.73	4.39	1.66	5.05	3.54	2.51	4.52	3.45
Merged-chr7-127213545-3	chr7	127213478	127213678	+	604.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017461)	TTS (NM_017461)	1970.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	6.06	6.29	1.14	2.41	5.32	10.35	2.66	4.77	5.51	9.04	5.53	8.77
Merged-chr12-102422793-1	chr12	102422693	102422893	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	L1MB7|LINE|L1	17020.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.04	3.27	3.99	0.0	6.95	5.02	2.66	11.1	9.64	4.52	4.02	4.39
Merged-chr8-70866856-1	chr8	70866756	70866956	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6634.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	0.25	0.0	0.8	1.64	0.0	0.0	0.42	3.15	4.52	0.0	4.39
Merged-chr13-59798549-1	chr13	59798449	59798649	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153538, intron 14 of 27)	intron (NM_153538, intron 14 of 27)	24598.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.85	4.02	4.56	3.22	6.55	3.45	3.99	4.65	7.67	7.03	7.03	5.95
Merged-chr5-127616554-1	chr5	127616454	127616654	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	838.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	2.83	5.79	5.7	7.24	5.32	6.27	6.31	6.59	12.0	6.03	5.53	4.07
Merged-chr1-60857774-2	chr1	60857675	60857875	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51250.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	9.69	3.02	9.13	2.82	4.91	1.88	3.32	2.69	9.64	11.55	13.06	2.82
Merged-chr5-92205457-1	chr5	92205357	92205557	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9951.0	NR_033483	57425.0	Mm.2548	NM_020562	ENSMUSG00000029409	U90926	-	cDNA sequence U90926	ncRNA	2.83	3.27	3.42	4.42	3.27	2.2	4.98	4.82	4.72	2.51	3.52	1.88
Merged-chr11-110436842-1	chr11	110436742	110436942	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	(TG)n|Simple_repeat|Simple_repeat	37740.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.08	3.77	7.99	9.65	0.82	1.25	1.0	1.04	7.08	9.04	9.55	5.64
Merged-chr15-62383017-1	chr15	62382917	62383117	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-163566.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.04	4.28	3.99	4.02	4.91	2.2	5.31	4.51	4.13	13.56	12.56	4.7
Merged-chr18-61077337-2	chr18	61077238	61077438	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28234.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.25	9.56	7.99	4.83	3.27	7.21	4.32	3.28	12.19	10.54	9.55	3.13
Merged-chr14-62354108-1	chr14	62354008	62354208	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22040.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	10.09	5.03	4.56	0.8	3.27	5.33	4.98	5.27	6.29	4.52	7.03	2.82
Merged-chr4-152159361-1	chr4	152159261	152159461	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301805, intron 1 of 4)	intron (NM_001301805, intron 1 of 4)	494.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	6.06	6.04	1.14	6.03	5.32	4.7	9.63	4.09	2.75	2.51	5.02	7.52
Merged-chr6-145129656-1	chr6	145129556	145129756	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	B4|SINE|B4	7917.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.65	1.01	4.56	3.22	2.86	5.33	3.99	4.71	4.52	2.01	1.51	0.31
Merged-chr2-109954124-1	chr2	109954024	109954224	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	36477.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	2.83	4.02	6.28	4.42	1.64	3.14	2.99	4.12	5.51	4.02	11.56	13.78
Merged-chr11-55204775-1	chr11	55204675	55204875	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	435.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	3.63	4.78	7.42	7.24	2.86	8.15	2.66	4.51	4.13	4.52	7.54	11.59
Merged-chr7-135490718-1	chr7	135490618	135490818	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	37936.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	6.86	5.79	2.28	9.25	3.27	5.64	3.99	6.22	5.31	1.0	4.02	5.95
Merged-chr7-99833278-1	chr7	99833178	99833378	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4861.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.0	2.77	3.42	2.41	1.64	3.76	1.66	3.2	8.65	6.53	5.02	7.21
Merged-chr11-8625496-1	chr11	8625396	8625596	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	39039.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.23	3.77	4.56	6.03	6.14	4.08	0.0	4.71	5.7	1.51	2.01	0.63
Merged-chr3-144207728-1	chr3	144207628	144207828	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2473.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	8.08	5.28	2.28	0.8	12.27	7.84	1.0	6.39	7.08	7.03	9.04	3.45
Merged-chr9-56105308-1	chr9	56105208	56105408	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	15332.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	2.83	1.26	5.7	5.63	6.95	5.96	3.99	4.99	3.34	5.52	3.52	3.45
Merged-chr15-85735433-2	chr15	85735347	85735547	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113418)	promoter-TSS (NM_001113418)	-117.0	NM_001113418	19013.0	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	9.69	9.31	5.13	6.84	9.0	8.15	3.65	4.4	4.92	6.53	2.51	4.7
Merged-chr5-111139900-1	chr5	111139800	111140000	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	135756.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	2.02	2.01	1.14	0.0	5.73	2.82	5.31	5.86	2.16	4.52	4.52	0.63
Merged-chr4-139598584-1	chr4	139598484	139598684	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	MLTR14|LTR|ERV1	23864.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.23	3.52	8.56	4.02	3.68	4.39	2.66	2.1	9.44	7.53	5.53	4.7
Merged-chr11-21033057-1	chr11	21032957	21033157	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-58267.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.65	2.52	5.7	4.42	8.59	7.53	8.64	4.54	14.16	6.03	7.54	3.13
Merged-chr10-70135895-1	chr10	70135795	70135995	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111121, intron 1 of 8)	B3A|SINE|B2	38774.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	2.42	3.52	2.85	2.82	7.36	6.59	1.99	5.27	5.31	2.51	4.52	1.57
Merged-chr14-73472470-1	chr14	73472370	73472570	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37579.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	6.86	4.53	4.56	2.41	9.0	1.25	0.66	4.91	4.33	5.02	1.51	9.08
Merged-chr7-116607998-1	chr7	116607898	116608098	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	103629.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.23	6.79	5.7	7.64	5.32	1.57	7.31	3.39	8.26	7.03	9.04	18.17
Merged-chr14-121358570-1	chr14	121358470	121358670	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	20660.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.81	3.02	1.14	0.8	8.18	1.57	3.65	5.47	7.28	0.0	4.02	4.7
Merged-chrX-50537296-1	chrX	50537196	50537396	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131207)	promoter-TSS (NR_131207)	-93.0	NR_131207	102639259.0	Mm.350898	NR_131207		Gm35612	-	predicted gene, 35612	ncRNA	2.02	5.03	8.56	7.24	4.09	7.53	4.98	4.63	5.11	2.51	4.02	7.52
Merged-chr6-122599911-2	chr6	122599819	122600019	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	RSINE1|SINE|B4	2525.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.04	5.53	5.13	5.23	16.77	7.21	3.65	2.16	12.19	9.04	7.03	5.64
Merged-chr1-171058524-1	chr1	171058424	171058624	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010188, intron 2 of 4)	intron (NM_010188, intron 2 of 4)	870.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	1.21	7.55	5.7	6.84	3.27	0.31	4.98	4.49	3.93	2.51	1.51	1.88
Merged-chrX-142391347-1	chrX	142391247	142391447	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207625)	promoter-TSS (NM_207625)	-812.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	2.02	1.76	10.27	2.41	2.86	6.9	0.66	4.35	6.1	11.05	10.55	5.33
Merged-chr11-31550887-1	chr11	31550787	31550987	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120975.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.0	0.25	1.14	0.4	2.45	0.0	1.99	1.74	7.67	1.51	24.62	8.46
Merged-chr16-91076402-1	chr16	91076302	91076502	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7257.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	8.48	4.53	2.85	0.8	3.68	7.21	5.98	5.21	2.16	8.03	8.04	2.51
Merged-chr17-26069063-1	chr17	26068963	26069163	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162868, exon 1 of 14)	exon (NM_001162868, exon 1 of 14)	114.0	NM_001162868	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	2.42	5.79	2.28	1.61	3.27	5.64	0.66	4.54	4.52	4.02	7.03	6.89
Merged-chr11-9433041-1	chr11	9432941	9433141	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 37 of 61)	intron (NM_178259, intron 37 of 61)	241099.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	1.62	0.0	1.14	0.8	1.64	1.88	6.64	5.07	3.74	3.51	6.53	2.19
Merged-chr13-56704184-1	chr13	56704084	56704284	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	516.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	4.44	7.04	2.28	3.22	4.91	1.88	0.66	2.38	10.03	7.03	9.55	4.07
Merged-chr12-80146664-1	chr12	80146564	80146764	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13820.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	4.04	6.04	4.56	4.02	5.73	7.21	0.66	4.71	6.29	7.53	6.03	8.14
Merged-chr10-127587393-1	chr10	127587293	127587493	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33755.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.27	2.77	5.13	1.61	6.55	3.76	1.66	5.47	4.13	6.53	2.01	5.95
Merged-chr6-48642980-1	chr6	48642880	48643080	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4254.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	7.27	5.79	9.13	12.47	6.55	3.14	1.33	8.38	9.44	8.03	5.53	2.82
Merged-chr3-123322323-1	chr3	123322223	123322423	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027135, intron 8 of 22)	intron (NM_027135, intron 8 of 22)	54827.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	4.85	4.02	1.14	2.41	6.14	7.21	1.66	7.54	2.95	1.51	3.01	3.45
Merged-chr11-3347322-1	chr11	3347222	3347422	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034030, intron 9 of 11)	intron (NM_001034030, intron 9 of 11)	8819.0	NM_001034030	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	2.83	5.03	3.42	6.03	5.73	5.33	2.66	4.82	5.11	0.5	5.02	6.89
Merged-chr14-65374252-1	chr14	65374152	65374352	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	15576.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.63	5.28	9.13	1.21	9.82	8.47	4.32	6.93	7.87	4.02	6.53	5.33
Merged-chr11-116390877-1	chr11	116390777	116390977	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	22155.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	8.15	3.32	0.76	10.03	5.52	13.06	6.58
Merged-chr16-33918866-1	chr16	33918766	33918966	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	48172.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.81	0.5	0.0	3.22	6.14	2.82	0.66	5.27	0.59	2.51	4.52	0.94
Merged-chr13-113491109-1	chr13	113491009	113491209	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11735.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.65	6.54	7.42	4.02	6.95	4.39	6.64	5.83	14.16	11.55	6.53	4.7
Merged-chr1-152934142-1	chr1	152934042	152934242	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20959.0	NM_175460	226518.0	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0.0	2.26	5.7	12.07	1.64	4.7	1.99	2.86	2.56	7.03	7.03	2.51
Merged-chr14-47636710-1	chr14	47636610	47636810	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12601.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	6.06	8.3	11.41	0.8	3.68	5.02	1.0	2.58	2.16	0.0	2.01	0.94
Merged-chr13-21721393-1	chr13	21721293	21721493	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-651.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	6.86	3.27	3.42	4.42	5.73	5.33	5.31	4.71	5.7	3.51	7.03	5.64
Merged-chr4-9629395-1	chr4	9629295	9629495	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	14322.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.62	1.76	0.0	1.61	2.45	2.2	3.32	4.4	9.05	7.53	14.57	4.07
Merged-chr4-102329230-2	chr4	102329136	102329336	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	74297.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.88	2.77	22.25	10.46	2.05	4.39	5.98	5.07	4.33	6.03	0.0	4.7
Merged-chr3-84938146-2	chr3	84938037	84938237	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-14074.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.48	2.26	1.14	6.84	0.82	0.63	5.31	6.64	2.16	2.51	2.51	6.27
Merged-chr10-99097524-1	chr10	99097424	99097624	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9558.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	6.06	1.76	7.99	4.42	4.5	5.02	5.31	6.34	7.28	5.52	5.53	2.51
Merged-chr5-62764357-2	chr5	62764251	62764451	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	1826.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.81	5.79	5.7	8.85	5.73	2.51	4.32	6.31	7.87	9.54	9.55	1.57
Merged-chr6-125436881-2	chr6	125436783	125436983	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-56379.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	2.42	2.52	1.71	1.61	4.5	0.94	9.97	5.02	6.29	4.52	11.56	7.21
Merged-chr10-94317928-2	chr10	94317828	94318028	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	Lx2|LINE|L1	5979.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.81	1.51	4.56	3.62	8.18	9.09	3.99	4.79	8.85	7.03	8.54	6.27
Merged-chr5-140112080-1	chr5	140111980	140112180	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	L1MD|LINE|L1	62838.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.04	4.78	3.42	7.24	5.32	1.88	4.32	6.81	4.13	2.01	4.02	6.27
Merged-chr17-37185635-1	chr17	37185535	37185735	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8257.0	NM_023137	24108.0	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.81	7.29	5.13	9.25	4.09	2.2	1.66	2.75	3.74	1.51	6.03	1.88
Merged-chr17-28485076-1	chr17	28484976	28485176	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010220, intron 1 of 10)	intron (NM_010220, intron 1 of 10)	1073.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	2.02	0.0	5.7	0.4	0.82	4.08	4.65	2.07	0.0	0.5	0.5	0.63
Merged-chr11-97098814-1	chr11	97098714	97098914	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019507, exon 6 of 6)	exon (NM_019507, exon 6 of 6)	16517.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.81	1.01	0.0	6.84	10.23	3.14	11.29	3.06	6.88	4.02	2.51	5.33
Merged-chr2-167650296-1	chr2	167650196	167650396	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11248.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.81	1.26	10.27	0.8	8.18	0.94	1.66	6.48	3.54	2.51	1.51	2.51
Merged-chr2-122110112-1	chr2	122110012	122110212	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145531, intron 4 of 39)	intron (NM_145531, intron 4 of 39)	8274.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	3.23	2.01	2.28	3.22	2.05	5.33	3.99	4.85	2.95	1.51	3.01	3.13
Merged-chr9-123984703-1	chr9	123984603	123984803	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-6295.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	7.27	8.8	1.14	1.61	0.82	3.14	4.98	3.7	5.31	6.03	4.02	1.25
Merged-chr5-3348143-2	chr5	3348041	3348241	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	4248.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.02	5.53	1.14	0.8	5.32	12.54	8.64	1.49	11.01	13.05	6.53	0.31
Merged-chr10-22159380-1	chr10	22159280	22159480	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	771.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	5.65	5.03	9.7	11.66	6.14	3.76	6.64	5.72	1.97	1.0	1.51	0.63
Merged-chr6-8036361-1	chr6	8036261	8036461	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	MLT1D|LTR|ERVL-MaLR	156256.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	2.42	6.54	2.85	3.62	0.82	0.63	0.0	0.03	0.0	1.0	0.0	0.0
Merged-chr15-59248622-1	chr15	59248522	59248722	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58326.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.81	1.26	0.0	3.22	3.27	4.7	3.99	5.61	0.59	0.0	4.52	0.94
Merged-chr1-182413062-1	chr1	182412962	182413162	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	3895.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.81	1.26	0.0	2.82	2.05	5.96	5.31	5.47	4.13	3.51	2.01	9.08
Merged-chr11-31899238-1	chr11	31899138	31899338	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	28298.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	1.21	0.5	1.71	0.4	0.82	5.96	4.65	4.35	4.92	7.03	1.51	6.27
Merged-chr6-70837518-1	chr6	70837418	70837618	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6997.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.06	4.02	7.99	3.22	5.73	3.76	6.31	5.05	9.64	3.51	3.01	9.4
Merged-chr11-16980781-1	chr11	16980681	16980881	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27937.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	2.02	3.52	0.57	4.83	4.91	4.7	2.66	5.19	5.9	5.02	2.01	2.82
Merged-chr1-134071082-2	chr1	134070973	134071173	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8082.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	2.42	5.28	2.28	7.24	8.59	14.42	0.33	2.94	8.06	5.52	1.51	6.27
Merged-chr2-122573831-1	chr2	122573731	122573931	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37446.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.06	4.53	3.42	4.02	6.55	13.8	7.97	3.93	5.11	3.01	2.01	1.25
Merged-chr15-38635233-1	chr15	38635133	38635333	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26671.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.23	2.01	2.28	0.4	6.55	4.39	4.32	6.14	0.39	2.51	1.51	2.51
Merged-chr15-38002397-1	chr15	38002297	38002497	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081359, exon 34 of 59)	exon (NM_001081359, exon 34 of 59)	-41342.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	4.04	3.02	6.28	2.41	4.09	6.9	1.0	6.14	4.72	0.0	7.03	0.0
Merged-chr18-39487111-1	chr18	39487011	39487211	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008173, exon 1 of 8)	exon (NM_008173, exon 1 of 8)	134.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.85	5.28	1.14	4.42	4.91	4.7	0.66	4.96	5.11	9.54	9.04	7.83
Merged-chr6-59020533-2	chr6	59020435	59020635	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 1 of 17)	AmnSINE1|SINE|Deu	3967.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.65	7.29	5.7	7.64	10.64	3.76	2.66	5.1	8.46	6.03	12.56	2.51
Merged-chr11-115691231-1	chr11	115691131	115691331	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8303.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.65	3.27	6.85	2.01	5.32	6.27	5.31	3.03	8.46	6.53	11.56	5.95
Merged-chr4-3777244-1	chr4	3777144	3777344	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	58411.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.44	3.27	11.98	6.44	2.45	5.02	5.65	2.44	5.11	7.03	8.04	4.7
Merged-chr16-58663203-1	chr16	58663103	58663303	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7005.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	7.67	3.52	2.28	6.44	6.14	4.08	2.33	4.57	5.9	3.01	11.05	7.21
Merged-chr3-90508388-1	chr3	90508288	90508488	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293777, intron 1 of 5)	intron (NM_001293777, intron 1 of 5)	1110.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	2.42	3.02	3.99	1.61	6.55	1.57	1.33	1.46	1.18	3.51	2.01	1.88
Merged-chr4-40899782-1	chr4	40899682	40899882	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20274.0	NM_011463	20731.0	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	2.02	2.26	3.99	3.62	6.14	2.82	5.31	6.28	1.77	2.01	3.52	4.39
Merged-chr7-30414721-1	chr7	30414621	30414821	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011662, intron 3 of 4)	intron (NM_011662, intron 3 of 4)	933.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	2.83	4.02	2.28	2.01	2.05	4.7	1.33	2.64	9.64	0.5	8.04	3.45
Merged-chr17-33972342-1	chr17	33972242	33972442	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6449.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	3.23	6.54	7.99	1.21	0.82	1.25	0.0	0.03	3.34	3.01	5.53	1.25
Merged-chr7-28452230-1	chr7	28452130	28452330	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001141921)	promoter-TSS (NM_001141921)	3.0	NR_030567	100124445.0		NR_030567	ENSMUSG00000077998	Mir466f-2	Mirn466f-2	microRNA 466f-2	ncRNA	8.48	2.52	3.42	1.61	6.55	5.02	3.32	6.87	4.33	5.02	1.0	5.95
Merged-chr5-122965694-2	chr5	122965598	122965798	+	603.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	23401.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	5.65	7.29	10.27	10.05	9.0	5.96	7.31	5.02	3.54	4.02	5.53	6.58
Merged-chr9-54676763-3	chr9	54676651	54676851	+	603.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14866.0	NM_053178	94180.0	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	4.85	5.53	14.26	11.66	1.23	11.92	11.29	4.71	5.7	12.05	9.04	3.13
Merged-chr13-55841489-2	chr13	55841392	55841592	+	603.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-10067.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	11.31	4.28	16.54	3.22	8.18	5.02	3.65	5.13	7.08	1.51	1.51	5.64
Merged-chr18-61134787-3	chr18	61134724	61134924	+	603.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134134, intron 19 of 20)	intron (NM_134134, intron 19 of 20)	17356.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	4.44	2.77	6.85	8.04	10.64	5.64	4.98	1.51	4.33	13.56	7.54	7.83
Merged-chr8-121934643-1	chr8	121934543	121934743	+	603.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	10269.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	5.65	5.53	9.13	4.83	5.32	11.29	3.99	5.72	4.92	5.02	8.54	9.71
Merged-chr10-75795114-2	chr10	75795014	75795214	+	603.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008185, intron 2 of 4)	RLTR28|LTR|ERVL	2617.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	4.04	5.03	13.69	3.22	6.55	8.15	1.33	4.6	10.03	6.03	11.05	9.71
Merged-chr3-38561361-1	chr3	38561261	38561461	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76545.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.85	1.26	2.28	2.82	0.82	4.39	8.3	5.02	5.11	5.02	1.51	1.57
Merged-chr7-81573630-1	chr7	81573530	81573730	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	2338.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	7.27	3.77	1.71	3.22	4.5	8.15	1.33	4.37	3.74	2.01	8.54	2.19
Merged-chr18-4922821-2	chr18	4922730	4922930	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110344.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.85	7.55	6.85	0.8	9.41	9.09	10.3	4.65	8.85	9.54	9.04	3.13
Merged-chr1-106020058-1	chr1	106019958	106020158	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122675, intron 8 of 12)	intron (NM_001122675, intron 8 of 12)	29652.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.23	2.77	5.7	4.83	8.59	7.84	4.65	4.79	4.52	11.55	6.03	7.21
Merged-chrX-12153542-1	chrX	12153442	12153642	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	6804.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	3.63	7.04	7.42	6.84	9.41	10.98	0.0	4.71	8.06	4.52	4.52	2.82
Merged-chr5-149336079-2	chr5	149335977	149336177	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71073.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	8.08	3.52	2.28	3.22	8.59	8.47	3.65	6.42	8.46	11.55	9.04	10.34
Merged-chr6-120190590-1	chr6	120190490	120190690	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	MIRb|SINE|MIR	-3233.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.23	1.76	1.14	2.01	9.82	3.14	5.65	6.11	2.95	7.03	3.01	4.07
Merged-chr13-99126228-2	chr13	99126115	99126315	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-38294.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	4.04	5.53	7.42	3.22	4.5	7.53	1.66	5.1	10.42	3.01	14.07	8.77
Merged-chr10-60691090-1	chr10	60690990	60691190	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 1 of 68)	G-rich|Low_complexity|Low_complexity	5400.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	8.08	1.51	2.28	0.8	6.14	2.2	8.3	4.74	6.88	3.01	3.01	2.51
Merged-chr19-34382828-1	chr19	34382728	34382928	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	92169.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.81	1.51	2.28	2.41	2.05	4.7	5.65	6.31	0.79	0.5	3.52	0.63
Merged-chr1-45926618-1	chr1	45926518	45926718	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1024.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.04	2.52	4.56	6.84	4.09	1.25	5.65	3.36	5.31	5.02	0.0	1.88
Merged-chr1-92895262-2	chr1	92895170	92895370	+	603.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347091, intron 4 of 17)	intron (NM_001347091, intron 4 of 17)	7636.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	8.88	6.54	6.28	4.02	13.5	4.08	2.33	5.05	7.67	6.03	15.07	3.76
Merged-chr6-88113293-1	chr6	88113193	88113393	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9035.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	5.25	4.02	11.41	0.4	5.32	5.33	3.32	5.44	2.95	15.57	8.54	2.19
Merged-chr2-167219532-2	chr2	167219432	167219632	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	21005.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.25	3.02	0.0	3.22	8.59	6.9	4.98	4.12	9.05	5.02	7.03	8.14
Merged-chr2-174312323-1	chr2	174312223	174312423	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	14464.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	9.69	4.53	11.98	6.44	7.36	4.39	3.65	5.38	6.1	5.52	9.04	0.94
Merged-chr7-142435712-2	chr7	142435619	142435819	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285858, intron 1 of 8)	intron (NM_001285858, intron 1 of 8)	742.0	NM_018802	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	4.04	8.3	9.13	3.22	4.91	5.02	7.64	4.49	7.47	5.52	4.02	6.58
Merged-chr5-45526498-1	chr5	45526398	45526598	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025895, exon 4 of 4)	3' UTR (NM_025895, exon 4 of 4)	6269.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	2.42	9.81	5.7	4.02	6.14	6.9	2.66	6.06	5.11	2.01	5.02	2.82
Merged-chr7-127675249-1	chr7	127675149	127675349	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347652, intron 5 of 5)	LTR41B|LTR|ERVL	-33238.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	5.65	3.77	4.56	0.8	4.09	4.08	4.65	6.28	3.34	4.02	2.51	3.45
Merged-chr11-76916716-1	chr11	76916616	76916816	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025655)	TTS (NM_025655)	12171.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	2.42	2.26	2.28	4.02	2.05	7.53	3.32	5.44	2.16	2.01	4.52	3.45
Merged-chr14-34662015-1	chr14	34661915	34662115	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8441.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	2.42	2.52	0.57	2.82	3.27	4.7	4.65	6.03	4.52	6.03	3.52	1.88
Merged-chr7-128132292-2	chr7	128132227	128132427	+	603.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021334, intron 5 of 29)	intron (NM_021334, intron 5 of 29)	2759.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	3.63	2.52	6.28	7.24	6.14	4.7	4.65	8.58	4.33	6.03	6.03	2.82
Merged-chr13-115230741-1	chr13	115230641	115230841	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128777.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.23	3.02	1.14	4.02	5.32	6.27	4.65	3.87	4.92	2.51	8.54	3.76
Merged-chr9-40731866-1	chr9	40731766	40731966	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45902.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.63	2.77	2.28	2.82	8.59	5.96	8.3	5.05	1.18	1.0	1.0	0.94
Merged-chr7-116309752-1	chr7	116309652	116309852	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1376.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	5.25	2.01	3.99	4.42	2.45	11.92	7.31	6.48	2.16	1.0	5.53	0.0
Merged-chr2-165923195-1	chr2	165923095	165923295	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-38357.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.44	4.53	2.28	8.04	7.77	4.39	2.33	5.27	9.05	2.01	8.54	8.46
Merged-chr9-66878291-1	chr9	66878191	66878391	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	B2_Mm1t|SINE|B2	41414.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	1.62	1.01	0.0	2.01	5.73	3.14	6.64	2.94	6.49	10.54	1.51	4.07
Merged-chr11-118200543-2	chr11	118200443	118200643	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	L1MB3|LINE|L1	12199.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.86	4.02	1.14	6.84	5.73	0.63	4.98	5.64	6.49	6.03	8.54	4.07
Merged-chr13-56614525-1	chr13	56614425	56614625	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155548, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	4939.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.63	4.78	6.28	4.02	6.55	4.7	0.0	5.05	5.51	3.01	4.52	0.63
Merged-chr2-27677694-1	chr2	27677594	27677794	+	603.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	CpG	493.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.42	6.79	3.99	5.23	8.59	10.66	11.63	4.88	4.13	10.04	6.53	5.95
Merged-chr15-31452979-3	chr15	31452794	31452994	+	603.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	795.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	1.21	2.01	5.7	2.82	4.91	6.27	2.33	2.8	4.33	2.01	2.01	8.14
Merged-chr7-142373336-1	chr7	142373236	142373436	+	603.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347541, intron 1 of 2)	intron (NM_001347541, intron 1 of 2)	410.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	7.27	5.79	3.42	10.86	2.45	1.57	0.33	2.47	2.95	1.51	8.04	5.64
Merged-chr7-145047879-1	chr7	145047779	145047979	+	603.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107954.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.04	7.04	6.28	8.04	8.59	9.09	2.99	5.19	4.72	7.53	4.52	10.96
Merged-chr6-86456225-1	chr6	86456125	86456325	+	603.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001243742, intron 6 of 9)	B3|SINE|B2	17579.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	4.85	7.55	17.11	9.25	4.09	3.76	2.33	4.21	7.67	9.54	6.03	5.64
Merged-chr1-34579682-2	chr1	34579583	34579783	+	603.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_213727)	promoter-TSS (NM_213727)	-10.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	9.29	1.01	7.99	2.41	5.73	8.15	7.31	4.51	14.36	7.03	5.53	8.14
Merged-chr2-142859720-2	chr2	142859615	142859815	+	603.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	41749.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.65	6.79	6.85	3.22	6.14	3.76	5.65	5.94	8.06	6.03	15.58	9.08
Merged-chr2-84064549-2	chr2	84064446	84064646	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-123320.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	3.23	4.53	7.99	4.42	9.41	15.99	2.99	4.54	8.06	2.01	11.56	1.88
Merged-chr16-97536874-1	chr16	97536774	97536974	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013606, intron 1 of 13)	RMER17C|LTR|ERVK	791.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	4.04	5.28	0.0	6.03	3.27	8.47	5.31	2.61	2.75	4.02	9.55	3.13
Merged-chr4-86576513-1	chr4	86576413	86576613	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178376, exon 1 of 1)	exon (NM_178376, exon 1 of 1)	840.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	2.42	1.51	5.13	2.41	5.32	3.14	5.65	4.63	6.1	1.51	5.02	4.39
Merged-chr15-50816711-1	chr15	50816611	50816811	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	72338.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.42	2.01	6.85	3.22	4.91	7.84	7.97	5.19	5.31	5.02	6.53	7.83
Merged-chr5-147541899-1	chr5	147541799	147541999	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	111743.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	1.21	3.52	4.56	0.8	1.23	0.0	5.31	3.81	4.92	7.53	6.03	3.76
Merged-chr15-50402780-1	chr15	50402680	50402880	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	486269.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.23	2.01	0.0	6.03	2.45	9.09	7.64	4.07	5.31	5.02	11.05	5.64
Merged-chr3-96564419-1	chr3	96564319	96564519	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	2382.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.85	4.53	3.99	8.04	7.36	8.15	1.66	4.63	2.36	3.51	8.04	5.95
Merged-chr10-37194720-1	chr10	37194620	37194820	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-55794.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	9.69	7.04	10.27	4.42	9.82	10.98	6.31	7.35	8.46	5.52	13.06	3.13
Merged-chr2-49727868-1	chr2	49727768	49727968	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-59818.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	4.04	3.27	3.42	4.83	1.64	5.02	3.32	6.42	5.31	0.0	6.53	3.76
Merged-chr4-101419341-1	chr4	101419241	101419441	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177602)	promoter-TSS (NM_001177602)	20.0	NM_001177604	11639.0	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	8.48	2.26	11.98	1.61	3.27	4.39	5.31	1.49	2.36	1.51	5.53	5.33
Merged-chr7-19477251-2	chr7	19477155	19477355	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18761.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	8.08	6.04	0.0	10.46	0.41	1.57	3.99	4.51	9.05	7.03	13.06	3.13
Merged-chr14-33172014-1	chr14	33171914	33172114	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	13052.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	6.46	5.03	2.28	4.02	7.77	8.15	0.66	2.07	5.31	6.53	4.52	2.51
Merged-chr1-34434078-1	chr1	34433978	34434178	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-879.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	6.06	3.02	1.14	5.23	4.5	4.7	1.33	3.31	8.26	2.01	5.02	1.25
Merged-chrX-101746616-1	chrX	101746516	101746716	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-12469.0	NM_009910	12766.0	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	4.04	2.01	13.69	5.63	12.27	6.59	3.32	5.16	2.95	1.0	9.55	0.0
Merged-chr12-108991639-1	chr12	108991539	108991739	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	76578.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.4	0.5	1.14	0.4	6.14	2.82	3.65	5.33	0.98	3.51	3.01	4.39
Merged-chr6-88041364-1	chr6	88041264	88041464	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	3653.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	1.62	7.8	3.99	5.63	4.5	5.33	2.99	4.68	7.28	4.52	4.52	5.01
Merged-chr5-28038410-1	chr5	28038310	28038510	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33002.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.44	6.54	3.99	4.83	5.32	10.35	3.65	3.31	5.31	10.54	4.52	7.21
Merged-chr2-32854371-1	chr2	32854271	32854471	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7134.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	2.42	3.52	3.99	2.41	0.82	7.84	1.33	5.33	4.72	7.53	15.58	8.14
Merged-chr2-10825701-1	chr2	10825601	10825801	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	307546.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	2.42	2.01	1.14	2.01	2.86	7.21	1.66	5.16	5.7	0.0	6.53	1.25
Merged-chr9-38815610-1	chr9	38815510	38815710	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146781, exon 1 of 1)	exon (NM_146781, exon 1 of 1)	202.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	2.02	2.01	0.57	0.8	5.32	2.82	3.99	3.87	4.92	1.0	4.02	4.39
Merged-chr11-96760190-1	chr11	96760090	96760290	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177899)	TTS (NM_001177899)	17365.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.06	3.02	0.57	7.24	7.77	3.14	1.66	4.77	11.6	15.06	4.02	3.13
Merged-chr10-24595624-1	chr10	24595524	24595724	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010217, exon 1 of 5)	5' UTR (NM_010217, exon 1 of 5)	182.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	2.02	0.5	3.99	0.0	0.41	2.2	4.65	3.95	1.18	1.0	2.51	0.63
Merged-chr13-114459021-2	chr13	114458863	114459063	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301373)	promoter-TSS (NM_001301373)	-12.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.4	2.52	2.28	0.8	6.55	2.82	0.0	1.54	2.16	2.01	2.51	1.57
Merged-chr15-99652447-1	chr15	99652347	99652547	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-791.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	10.5	3.02	5.13	3.22	4.5	7.21	3.32	3.9	4.92	3.01	5.53	5.33
Merged-chr2-43795050-2	chr2	43794953	43795153	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	46229.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.63	2.77	1.14	5.63	6.55	4.7	2.33	5.64	8.65	4.02	9.55	10.34
Merged-chrX-7645519-1	chrX	7645419	7645619	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009305, intron 5 of 6)	intron (NM_009305, intron 5 of 6)	6939.0	NM_009305	20977.0	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	7.67	4.53	7.42	2.82	4.91	6.27	3.99	5.58	4.13	4.02	4.02	6.89
Merged-chr8-69273276-1	chr8	69273176	69273376	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	2196.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0.81	0.25	0.0	1.21	6.14	9.72	2.66	5.21	5.9	1.51	3.52	0.31
Merged-chr11-109424648-3	chr11	109424539	109424739	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-1307.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	11.31	8.8	10.27	0.4	6.14	12.86	4.65	5.19	9.64	9.54	8.04	1.25
Merged-chr1-153332566-1	chr1	153332466	153332666	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010683, exon 1 of 28)	5' UTR (NM_010683, exon 1 of 28)	220.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	5.25	8.05	0.0	3.62	4.5	8.78	12.95	3.48	3.34	3.51	4.52	4.07
Merged-chrX-71051661-1	chrX	71051561	71051761	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	1405.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	5.25	4.78	3.42	4.02	3.27	4.39	4.65	4.71	4.13	3.51	5.02	3.45
Merged-chr5-25100347-1	chr5	25100247	25100447	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	295.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.25	1.26	1.71	5.23	6.14	1.25	3.65	9.7	3.74	3.01	9.04	5.01
Merged-chr7-6475660-1	chr7	6475560	6475760	+	603.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146916)	TTS (NM_146916)	1548.0	NM_146916	258918.0	Mm.377748	NM_146916	ENSMUSG00000054938	Olfr1346	MOR103-6	olfactory receptor 1346	protein-coding	0.81	0.0	0.0	0.0	0.82	0.63	3.99	3.06	11.21	4.02	8.54	7.21
Merged-chr3-104219915-1	chr3	104219815	104220015	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159354, exon 1 of 21)	exon (NM_001159354, exon 1 of 21)	491.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	8.48	4.78	2.85	6.84	14.32	5.96	5.98	4.57	5.11	7.53	6.53	4.7
Merged-chr11-117242978-1	chr11	117242878	117243078	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23268.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.63	2.01	4.56	5.23	1.64	3.14	5.31	6.11	6.88	1.0	3.52	2.82
Merged-chr4-132976188-1	chr4	132976088	132976288	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2093.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	4.44	3.02	5.7	1.21	4.91	8.78	4.32	3.73	6.49	15.06	2.51	1.25
Merged-chr13-76844846-1	chr13	76844746	76844946	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	290622.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	3.63	4.02	2.85	4.02	4.91	4.7	6.31	4.99	3.15	3.01	3.01	4.39
Merged-chrX-107250595-1	chrX	107250495	107250695	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-5283.0	NM_001033251	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	2.83	0.0	1.14	2.41	7.36	1.88	2.66	6.62	5.31	4.52	4.02	3.76
Merged-chr11-106329907-1	chr11	106329807	106330007	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-15345.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	1.62	0.0	0.0	2.01	5.73	5.02	0.66	5.61	2.75	10.04	7.03	3.76
Merged-chr1-132328581-1	chr1	132328481	132328681	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195025, intron 5 of 7)	intron (NM_001195025, intron 5 of 7)	12456.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.63	3.77	16.54	3.22	5.32	5.64	1.99	8.64	4.92	2.01	4.52	5.33
Merged-chr1-175924066-1	chr1	175923966	175924166	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3737.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	4.85	0.5	0.57	7.24	5.73	5.02	1.0	6.25	3.54	7.53	4.02	3.45
Merged-chr14-58123080-1	chr14	58122980	58123180	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	50394.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	2.01	0.0	0.0	2.05	1.57	5.31	4.35	1.77	0.0	4.52	2.51
Merged-chr10-66911805-2	chr10	66911694	66911894	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_138560)	TTS (NR_138560)	8590.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	7.27	4.28	1.14	4.02	3.68	5.02	3.32	5.58	7.87	11.55	10.05	7.83
Merged-chr5-111119959-1	chr5	111119859	111120059	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	115815.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	1.62	3.27	5.7	7.64	6.95	5.33	2.66	6.48	2.56	0.5	1.51	0.0
Merged-chr13-56172130-1	chr13	56172030	56172230	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6755.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.63	5.03	1.14	3.62	2.45	5.64	3.99	4.43	2.36	0.5	1.0	4.07
Merged-chr15-100543059-2	chr15	100542948	100543148	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8960.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	4.85	10.06	3.42	5.23	4.91	6.9	6.98	2.44	12.59	9.04	2.01	3.13
Merged-chr5-53212996-1	chr5	53212896	53213096	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172710, intron 1 of 23)	CpG	456.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	3.23	4.02	3.42	4.42	3.27	5.96	7.64	3.03	2.16	6.03	1.51	4.7
Merged-chr5-113012189-1	chr5	113012089	113012289	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	3349.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	6.46	3.77	1.14	2.41	2.05	5.64	1.99	3.9	4.52	5.52	5.02	2.19
Merged-chr13-94713637-1	chr13	94713537	94713737	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75306.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	1.62	2.26	7.99	4.02	2.86	6.27	3.32	5.92	3.93	10.54	2.51	5.64
Merged-chr16-77020421-1	chr16	77020321	77020521	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	6352.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	2.02	2.52	3.42	2.41	1.64	5.02	2.33	2.33	1.18	7.03	2.01	2.51
Merged-chr14-62839556-1	chr14	62839456	62839656	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	1835.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	4.85	3.77	5.7	1.61	1.64	7.84	1.99	6.17	4.72	6.03	6.03	3.45
Merged-chr16-44009253-1	chr16	44009153	44009353	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359085, intron 7 of 16)	intron (NM_001359085, intron 7 of 16)	-4599.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	2.02	0.0	0.57	0.8	3.27	4.08	5.65	3.81	3.54	1.0	3.01	2.51
Merged-chr2-104134497-1	chr2	104134397	104134597	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11728.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.81	2.77	10.27	2.82	0.82	4.7	0.33	1.57	2.16	1.51	3.52	2.82
Merged-chr12-5181761-1	chr12	5181661	5181861	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	193921.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	5.25	1.26	3.42	1.61	5.73	1.25	4.32	4.71	6.49	12.55	11.56	5.01
Merged-chr18-57957776-1	chr18	57957676	57957876	+	603.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	79098.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	1.21	6.29	1.14	6.44	2.45	2.2	3.99	4.43	4.52	10.54	11.05	5.01
Merged-chr11-116113581-1	chr11	116113481	116113681	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3346.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	10.09	9.31	13.12	7.24	0.0	0.94	0.0	0.03	0.0	0.0	0.0	0.0
Merged-chr2-61494651-1	chr2	61494551	61494751	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83935.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.85	3.52	3.42	8.04	1.64	5.33	7.64	4.21	2.16	3.51	6.53	0.31
Merged-chr11-77461246-1	chr11	77461146	77461346	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2667.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	2.02	4.78	9.7	0.4	4.5	10.35	5.31	1.91	3.34	4.02	7.03	2.19
Merged-chr9-85206094-1	chr9	85205994	85206194	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121030.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.23	2.01	2.28	4.02	1.64	2.51	3.99	4.99	2.16	4.52	4.02	1.25
Merged-chr13-45623949-2	chr13	45623847	45624047	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	(ATG)n|Simple_repeat|Simple_repeat	116503.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	6.46	9.06	2.85	1.61	10.23	13.48	7.64	0.93	8.46	15.57	3.01	6.89
Merged-chr1-184484490-1	chr1	184484390	184484590	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73201.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.44	2.52	5.13	3.22	5.32	3.76	3.99	7.21	12.0	7.03	8.54	3.76
Merged-chr10-83448796-1	chr10	83448696	83448896	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85344.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.81	1.51	0.0	3.22	4.09	8.15	4.98	5.92	0.39	0.0	0.5	0.31
Merged-chr2-150608017-1	chr2	150607917	150608117	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	550.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	5.25	0.75	0.57	1.61	2.05	3.14	5.31	6.45	3.15	3.01	3.52	5.95
Merged-chr13-80902959-1	chr13	80902859	80903059	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16864.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	1.21	2.52	0.57	2.41	3.68	8.78	8.97	2.55	3.15	3.51	6.03	2.51
Merged-chr9-64059498-1	chr9	64059398	64059598	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9669.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	3.23	1.01	0.0	0.8	6.55	1.57	4.98	3.42	2.16	1.0	4.02	1.25
Merged-chr11-75677979-2	chr11	75677845	75678045	+	602.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1314.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	2.02	6.04	2.28	5.63	6.14	5.96	2.99	2.83	7.28	8.54	9.55	7.21
Merged-chr11-113865845-2	chr11	113865749	113865949	+	602.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172800, intron 12 of 44)	intron (NM_172800, intron 12 of 44)	-114034.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.44	12.58	18.25	10.86	5.73	6.59	3.99	5.07	4.13	4.52	3.52	2.19
Merged-chrX-42450504-2	chrX	42450415	42450615	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52050.0	NM_011364	20400.0	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	2.42	6.29	7.99	5.63	6.55	5.02	2.66	6.34	12.39	2.01	8.04	6.58
Merged-chr1-74339327-2	chr1	74339246	74339446	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	6736.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	4.44	6.79	3.42	3.22	2.86	5.33	6.98	5.16	8.65	7.03	12.06	6.27
Merged-chr1-150373068-2	chr1	150372965	150373165	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357579, intron 11 of 13)	intron (NM_001357579, intron 11 of 13)	-19773.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	2.42	2.52	3.42	8.04	3.27	12.23	8.64	7.6	8.26	13.56	10.05	8.46
Merged-chr17-64397603-2	chr17	64397566	64397766	+	602.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43140.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	4.85	3.52	2.28	8.85	3.68	2.82	1.33	3.62	4.72	4.02	5.53	4.39
Merged-chr19-16016315-2	chr19	16016203	16016403	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31228.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.63	7.29	0.0	0.8	8.18	6.9	1.99	1.65	7.67	19.58	11.56	1.88
Merged-chr4-108302338-2	chr4	108302291	108302491	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1301.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	5.25	2.77	4.56	5.63	1.64	3.76	5.65	4.63	6.1	11.05	6.53	5.33
Merged-chr19-17251636-2	chr19	17251511	17251711	+	602.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	87894.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	10.9	5.53	9.7	8.45	3.27	5.02	2.66	10.49	4.92	9.04	11.05	5.01
Merged-chr1-59619609-3	chr1	59619509	59619709	+	602.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	ORR1F|LTR|ERVL-MaLR	51225.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	4.85	3.02	11.41	8.04	9.0	3.14	4.32	3.81	8.85	5.52	15.07	5.64
Merged-chr11-80382845-3	chr11	80382741	80382941	+	602.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-438.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	13.73	7.04	5.13	3.22	5.73	8.78	4.65	9.81	6.88	11.55	7.54	5.64
Merged-chr5-64959703-3	chr5	64959611	64959811	+	602.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	385.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	8.08	7.8	5.13	8.04	4.09	3.45	5.65	10.26	10.82	5.02	13.06	3.76
Merged-chr1-106328074-1	chr1	106327974	106328174	+	602.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	156205.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	1.51	13.69	4.42	6.55	5.02	7.31	5.3	2.36	2.51	3.52	1.57
Merged-chr16-10767319-2	chr16	10767240	10767440	+	602.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18196.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	5.25	2.26	6.85	0.8	5.73	5.33	2.99	4.21	9.05	4.02	14.07	5.01
Merged-chr5-99341495-2	chr5	99341391	99341591	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	RMER17C|LTR|ERVK	-88564.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	13.33	4.53	2.28	3.62	4.91	9.72	3.32	2.41	6.29	2.51	10.05	7.21
Merged-chr2-33558491-2	chr2	33558385	33558585	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82026.0	NM_010725	16917.0	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	Icst|LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding	9.29	5.79	1.14	5.63	2.86	6.9	4.98	5.13	8.46	5.52	3.01	9.71
Merged-chr15-3251238-2	chr15	3251217	3251417	+	602.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19450.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.81	6.29	0.57	0.4	5.32	2.82	0.33	4.91	4.13	2.01	7.03	1.57
Merged-chr9-31131245-3	chr9	31131132	31131332	+	602.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	567.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.83	6.29	2.85	3.62	3.68	3.76	4.32	3.45	4.52	3.01	2.51	7.52
Merged-chr14-64070872-2	chr14	64070760	64070960	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14550.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	4.85	4.28	3.42	4.83	4.09	4.39	5.65	7.35	4.52	2.51	6.03	3.45
Merged-chr1-173879026-1	chr1	173878926	173879126	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1161.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	4.04	2.77	0.57	3.22	6.55	8.78	3.99	4.15	1.97	4.02	2.01	2.19
Merged-chr5-24486257-2	chr5	24486132	24486332	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 9 of 15)	intron (NM_001359881, intron 9 of 15)	34055.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	7.27	3.52	2.85	2.82	3.68	5.64	4.32	5.33	5.7	7.53	11.05	1.88
Merged-chr2-177759264-1	chr2	177759164	177759364	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243903)	promoter-TSS (NM_001243903)	-24.0	NM_001243903	626802.0	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	-	predicted gene 14322	protein-coding	1.62	1.01	3.42	4.83	5.32	6.9	1.33	6.42	2.95	1.51	6.03	2.51
Merged-chr4-135351797-1	chr4	135351697	135351897	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016799, intron 1 of 17)	intron (NM_016799, intron 1 of 17)	1417.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	4.04	3.02	5.7	2.41	2.45	8.47	3.99	4.49	6.1	7.03	15.07	3.76
Merged-chr10-20723269-2	chr10	20723154	20723354	+	602.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1824.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.65	8.3	6.85	2.41	1.64	4.08	5.98	5.66	3.93	4.52	5.53	3.13
Merged-chr12-83939497-1	chr12	83939397	83939597	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	1.62	4.28	2.28	4.83	6.55	6.27	1.33	5.07	5.11	2.01	2.51	1.88
Merged-chr17-57030963-1	chr17	57030863	57031063	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	544.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	3.63	4.78	4.56	3.22	6.14	2.82	5.31	4.91	15.54	8.03	3.52	5.95
Merged-chr15-38469275-1	chr15	38469175	38469375	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21272.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	4.04	4.53	7.99	3.22	9.0	1.25	8.97	5.5	4.13	5.52	5.02	2.82
Merged-chr9-106675655-2	chr9	106675553	106675753	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104459, intron 2 of 4)	intron (NR_104459, intron 2 of 4)	10163.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	3.23	2.77	0.0	1.21	3.27	6.9	0.0	5.1	10.62	4.52	9.55	6.89
Merged-chr4-134749450-2	chr4	134749378	134749578	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 6 of 8)	intron (NM_145554, intron 6 of 8)	18526.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	7.67	3.27	1.71	4.42	2.45	9.09	2.66	4.51	8.46	6.53	11.05	7.21
Merged-chr11-85706726-1	chr11	85706626	85706826	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045875, intron 2 of 5)	intron (NR_045875, intron 2 of 5)	13018.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.23	4.02	2.28	3.22	2.45	5.64	4.65	6.2	6.49	5.02	0.0	2.19
Merged-chr18-44607715-2	chr18	44607616	44607816	+	602.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53949.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	3.63	8.05	5.13	9.65	4.5	4.08	3.99	5.97	0.39	1.0	4.02	3.45
Merged-chr10-120189974-2	chr10	120189856	120190056	+	602.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	11641.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.85	3.27	3.42	3.22	8.59	5.64	3.99	4.09	7.67	8.03	13.57	10.65
Merged-chr11-94410088-2	chr11	94409974	94410174	+	602.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009783, intron 35 of 35)	intron (NM_009783, intron 35 of 35)	-17098.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	2.02	7.04	9.13	8.45	3.68	5.64	5.31	5.69	2.56	6.03	3.52	6.58
Merged-chr19-5474782-3	chr19	5474691	5474891	+	602.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	56.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	8.48	8.8	9.13	1.21	11.45	6.59	6.98	5.94	7.28	3.51	2.51	4.39
Merged-chr11-83191682-1	chr11	83191582	83191782	+	602.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	352.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	6.46	6.04	11.41	9.25	5.73	5.02	3.32	2.83	5.11	7.53	1.0	4.7
Merged-chr19-36922269-2	chr19	36922167	36922367	+	602.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2668.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	7.27	7.04	10.84	2.82	5.32	6.59	2.99	5.44	11.6	4.02	6.53	5.33
Merged-chr16-20671958-3	chr16	20671852	20672052	+	602.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	-775.0	NM_145941	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	10.9	7.55	8.56	6.84	9.41	9.09	3.32	6.7	7.87	13.05	10.55	6.58
Merged-chr10-68705740-1	chr10	68705640	68705840	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18006.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	1.21	0.0	2.85	0.0	2.05	4.08	9.63	5.38	10.82	4.52	7.03	4.7
Merged-chr8-34145887-2	chr8	34145789	34145989	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	850.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	7.27	7.29	21.11	8.04	8.18	6.9	3.32	4.63	2.36	2.01	4.52	1.25
Merged-chr18-20811958-1	chr18	20811858	20812058	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65554.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.81	2.26	3.42	0.8	4.91	2.51	5.65	4.91	3.54	1.0	8.54	2.51
Merged-chr4-40157939-2	chr4	40157830	40158030	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	14665.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	8.08	5.53	5.7	3.62	5.32	16.31	4.65	1.32	12.39	8.54	4.02	4.07
Merged-chr5-74710254-1	chr5	74710154	74710354	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7351.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.4	0.0	0.0	0.0	2.45	3.14	4.98	3.9	0.98	0.0	0.5	0.94
Merged-chr4-103104133-1	chr4	103104033	103104233	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	10166.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	3.23	0.75	3.42	6.84	7.77	2.51	7.31	4.4	10.82	4.02	14.57	6.27
Merged-chr9-102841286-1	chr9	102841186	102841386	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	6366.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.81	1.26	1.14	4.42	0.41	4.7	1.99	2.52	1.77	2.01	3.01	0.94
Merged-chr8-117294133-1	chr8	117294033	117294233	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37114.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	9.29	8.05	2.28	0.8	5.32	7.53	7.31	2.02	10.42	6.03	8.04	5.33
Merged-chr8-114442494-1	chr8	114442394	114442594	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 1 of 8)	intron (NM_019573, intron 1 of 8)	2842.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	4.04	2.77	0.0	5.63	8.18	3.76	6.31	4.18	10.23	2.01	9.04	5.64
Merged-chr2-28924097-1	chr2	28923997	28924197	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7429.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	6.46	3.27	2.28	5.23	5.73	7.53	1.99	3.79	3.93	6.53	12.06	9.71
Merged-chr2-19627749-1	chr2	19627649	19627849	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	30148.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	1.62	4.53	18.25	4.83	9.82	8.78	2.99	3.25	7.47	10.54	6.53	2.19
Merged-chr11-6680529-1	chr11	6680429	6680629	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20293.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	2.02	3.52	0.57	6.84	5.32	1.25	5.98	4.09	5.11	3.01	5.02	2.51
Merged-chr14-73451787-1	chr14	73451687	73451887	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58262.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	5.25	2.52	3.42	1.21	7.36	10.98	3.99	3.08	6.29	5.02	8.54	0.94
Merged-chr11-68408343-2	chr11	68408250	68408450	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21524.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	7.27	1.76	6.85	2.82	10.23	7.21	7.97	2.5	11.6	7.03	10.05	4.39
Merged-chr7-28982687-1	chr7	28982587	28982787	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-167.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	3.63	8.8	9.7	0.4	4.91	3.14	1.99	2.86	8.85	6.03	1.51	9.4
Merged-chr8-123803811-1	chr8	123803711	123803911	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2185.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	7.27	4.02	3.42	8.85	2.05	5.64	2.99	6.42	0.2	0.0	2.01	1.88
Merged-chr8-39640789-1	chr8	39640689	39640889	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	1889.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.4	1.76	0.0	2.41	2.45	3.76	1.33	4.85	0.79	2.51	2.51	1.88
Merged-chr11-77441192-1	chr11	77441092	77441292	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22721.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.4	1.51	1.14	0.4	6.95	3.14	1.66	5.3	8.06	12.05	2.51	0.0
Merged-chr8-107589033-2	chr8	107588937	107589137	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	-555.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	8.08	16.85	8.56	6.03	8.18	8.15	3.32	1.93	8.06	12.55	10.05	6.89
Merged-chr4-138866700-1	chr4	138866600	138866800	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3231.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	10.5	8.55	5.7	2.41	4.91	5.64	4.65	3.28	5.51	0.5	3.52	5.64
Merged-chrX-159211094-1	chrX	159210994	159211194	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44688.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	3.63	5.03	0.0	4.02	6.95	2.51	0.0	4.99	3.15	1.0	4.52	3.13
Merged-chr10-8240429-1	chr10	8240329	8240529	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	278396.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.25	3.52	5.7	6.44	4.09	6.9	1.0	4.18	4.13	9.04	5.02	7.83
Merged-chr19-10940962-1	chr19	10940862	10941062	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023731)	TTS (NM_023731)	3802.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	1.62	3.77	2.28	0.8	3.27	4.08	0.66	1.04	9.44	5.02	10.05	5.64
Merged-chr6-51914005-1	chr6	51913905	51914105	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018773, intron 6 of 12)	ORR1F|LTR|ERVL-MaLR	98544.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	2.02	3.02	2.85	2.01	4.09	5.96	1.33	4.99	2.95	1.0	1.51	4.39
Merged-chr13-55428893-1	chr13	55428793	55428993	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2089.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	1.62	4.02	9.13	8.04	1.64	4.39	3.99	2.33	10.62	3.51	11.05	4.07
Merged-chr5-130845732-1	chr5	130845632	130845832	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	396940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.44	2.52	4.56	4.02	4.91	4.7	3.65	6.28	4.33	6.03	3.52	1.25
Merged-chr18-6760991-1	chr18	6760891	6761091	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4176.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	2.83	4.53	8.56	6.44	1.23	6.27	0.66	6.67	13.18	9.04	8.04	5.33
Merged-chr15-59201385-1	chr15	59201285	59201485	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-105563.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.85	2.01	3.42	6.03	6.14	5.33	3.32	8.16	3.93	9.54	2.51	6.27
Merged-chr4-126197620-3	chr4	126197521	126197721	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	3386.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	10.09	9.56	7.99	8.45	7.77	6.9	4.32	3.98	7.28	9.54	12.56	6.27
Merged-chr1-92753401-1	chr1	92753301	92753501	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78244.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	2.42	1.26	3.99	1.21	0.82	2.51	7.97	5.3	1.57	4.52	0.0	0.63
Merged-chr15-76069315-1	chr15	76069215	76069415	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_133691)	TTS (NM_133691)	469.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	4.44	3.52	4.56	7.24	4.5	8.47	10.3	3.42	7.47	1.51	3.01	5.64
Merged-chr4-34960301-1	chr4	34960201	34960401	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48820.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	1.51	4.56	1.61	6.95	4.39	6.98	7.26	7.67	3.01	3.52	6.27
Merged-chr1-20466522-1	chr1	20466422	20466622	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	110068.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.81	1.51	1.14	2.41	6.55	3.76	2.66	5.5	6.88	1.0	3.01	5.33
Merged-chr3-142295415-1	chr3	142295315	142295515	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96435.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	1.21	4.28	2.28	0.0	1.23	1.57	6.31	4.46	6.29	6.03	8.04	5.64
Merged-chr1-88238728-1	chr1	88238628	88238828	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11708.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.04	5.03	1.71	0.8	6.95	0.63	1.33	0.93	7.08	5.52	5.02	2.51
Merged-chr7-79877992-1	chr7	79877892	79878092	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009682, exon 6 of 6)	3' UTR (NM_009682, exon 6 of 6)	-29782.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	8.08	4.78	6.28	0.0	9.0	9.41	1.99	2.41	8.06	7.53	5.53	5.64
Merged-chr12-40781753-1	chr12	40781653	40781853	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 30 of 52)	intron (NM_172803, intron 30 of 52)	-242337.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	1.62	1.51	3.42	2.01	2.45	0.63	6.98	5.02	0.39	0.5	1.51	0.94
Merged-chr12-32131500-1	chr12	32131400	32131600	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70221.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	5.65	4.28	3.42	13.67	4.5	4.39	1.0	6.87	6.1	3.51	4.52	3.13
Merged-chr10-93306096-1	chr10	93305996	93306196	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	5063.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.23	2.52	0.0	2.82	1.64	10.03	0.66	4.18	0.39	0.0	0.0	2.82
Merged-chr4-138154081-1	chr4	138153981	138154181	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355700, intron 10 of 30)	intron (NM_001355700, intron 10 of 30)	-9128.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	8.08	8.8	6.28	1.61	7.77	2.2	2.99	2.5	3.34	9.04	0.0	5.33
Merged-chr15-59565917-1	chr15	59565817	59566017	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-82737.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	1.62	0.5	0.57	3.22	4.91	2.51	2.66	4.79	1.97	0.0	1.0	0.94
Merged-chr17-43035315-1	chr17	43035215	43035415	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	PB1D10|SINE|Alu	18760.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.65	4.78	3.99	4.02	1.64	3.14	5.65	4.99	4.13	6.03	2.51	5.33
Merged-chr14-70192100-1	chr14	70192000	70192200	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271408, exon 12 of 21)	exon (NM_001271408, exon 12 of 21)	146.0	NM_001271409	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	4.44	5.03	1.14	2.82	5.32	0.31	3.32	3.76	2.75	4.52	1.51	1.57
Merged-chr18-69510957-1	chr18	69510857	69511057	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	164797.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.4	0.0	0.0	4.83	1.23	2.82	4.32	4.85	1.57	0.5	7.03	4.39
Merged-chr5-142896298-2	chr5	142896087	142896287	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-949.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	2.02	3.27	0.0	1.21	1.23	0.94	1.33	1.77	1.97	0.5	3.01	4.39
Merged-chr19-17256540-1	chr19	17256440	17256640	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	82965.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.83	3.77	1.14	2.01	7.36	9.72	6.31	4.74	0.98	3.51	5.02	1.57
Merged-chr7-3415513-1	chr7	3415413	3415613	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_133190)	TTS (NM_133190)	447.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	10.09	7.04	4.56	7.64	3.27	2.2	2.66	1.15	6.1	1.0	2.01	7.21
Merged-chr11-37186301-1	chr11	37186201	37186401	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-242060.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.23	4.78	4.56	1.61	6.95	2.82	1.0	4.74	10.82	6.03	9.04	4.07
Merged-chr4-46305549-1	chr4	46305449	46305649	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38645.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	4.85	5.28	1.14	3.22	4.09	4.08	6.64	4.07	6.69	3.01	5.02	6.89
Merged-chr17-67182473-1	chr17	67182373	67182573	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	Lx9|LINE|L1	-156238.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	1.51	0.0	1.21	6.55	7.21	1.66	4.54	3.54	0.0	1.51	5.33
Merged-chr4-95326084-1	chr4	95325984	95326184	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-231423.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	2.42	2.01	3.42	6.44	1.64	4.08	5.31	9.93	6.49	6.03	9.04	5.64
Merged-chr2-30969246-1	chr2	30969146	30969346	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-1328.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	5.65	4.02	4.56	0.0	4.91	14.74	1.99	1.68	9.64	14.56	2.51	3.76
Merged-chrX-109096792-1	chrX	109096692	109096892	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	1385.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.81	3.27	10.27	1.61	1.23	4.7	4.98	2.89	1.97	5.02	11.56	6.89
Merged-chr15-76009880-1	chr15	76009780	76009980	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	-382.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	2.02	2.01	2.85	4.42	4.91	5.33	1.0	3.98	7.67	4.52	1.51	5.64
Merged-chr3-126576159-1	chr3	126576059	126576259	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-20792.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.46	1.76	3.42	1.21	2.45	2.51	2.99	0.95	10.03	4.02	10.55	1.57
Merged-chr10-98716359-1	chr10	98716259	98716459	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198283.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.86	0.5	10.27	2.41	5.73	3.76	3.32	11.21	3.15	4.02	6.53	3.13
Merged-chr16-11345406-1	chr16	11345306	11345506	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	22502.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	2.42	0.75	1.71	6.84	2.86	1.88	5.65	3.28	5.51	1.0	5.02	3.13
Merged-chr7-6384146-1	chr7	6384046	6384246	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175247, intron 1 of 6)	intron (NM_175247, intron 1 of 6)	828.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	2.02	1.26	2.85	1.61	6.14	0.63	5.31	2.92	2.95	5.02	4.52	2.51
Merged-chr18-60515694-1	chr18	60515594	60515794	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10460.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	4.04	4.02	2.28	1.61	7.77	4.08	3.32	5.3	3.34	1.0	2.51	5.01
Merged-chr3-135522155-1	chr3	135522055	135522255	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027288, intron 5 of 16)	intron (NM_027288, intron 5 of 16)	36544.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	1.21	0.0	0.0	0.0	7.77	9.09	2.66	5.13	4.33	3.51	1.0	1.25
Merged-chr4-135973257-3	chr4	135973160	135973360	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-666.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	8.08	4.53	5.7	3.22	6.95	5.33	2.66	7.71	6.69	8.03	5.53	9.08
Merged-chr12-80937904-1	chr12	80937804	80938004	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	7495.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	11.31	2.52	4.56	3.62	5.73	0.94	1.33	6.5	8.46	6.03	5.53	4.07
Merged-chr18-77704952-2	chr18	77704825	77705025	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	9085.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	5.65	6.54	2.28	3.22	9.0	3.76	7.31	3.84	4.72	7.03	5.02	7.52
Merged-chr8-70561398-1	chr8	70561298	70561498	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21723.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.23	0.5	1.14	3.22	3.27	5.96	1.99	7.57	3.34	3.01	1.0	5.95
Merged-chr2-131430256-1	chr2	131430156	131430356	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61606.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.23	3.77	0.0	8.04	6.14	2.51	1.99	5.86	2.16	9.04	6.53	5.01
Merged-chr14-16302914-1	chr14	16302814	16303014	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021504, intron 10 of 11)	intron (NM_021504, intron 10 of 11)	-53106.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	7.27	3.77	9.7	3.22	6.14	4.7	1.33	5.61	4.72	3.51	1.51	1.57
Merged-chr14-54739535-1	chr14	54739435	54739635	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-27361.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.63	3.02	1.14	4.02	1.64	6.9	1.66	5.78	6.1	2.01	6.03	2.19
Merged-chr7-104218817-2	chr7	104218718	104218918	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	23.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	4.85	4.02	0.0	4.02	4.91	3.76	4.65	5.83	10.23	18.58	14.07	3.45
Merged-chr2-120629794-1	chr2	120629694	120629894	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20199.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	1.62	6.29	2.28	5.63	3.27	4.39	3.99	5.38	3.74	3.51	8.54	5.33
Merged-chr2-148401029-1	chr2	148400929	148401129	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5652.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.0	2.77	16.54	0.8	3.27	0.0	5.98	3.84	1.18	2.01	4.52	3.13
Merged-chr15-5243714-1	chr15	5243614	5243814	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008965, exon 1 of 3)	5' UTR (NM_008965, exon 1 of 3)	473.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	2.02	7.8	4.56	1.61	4.91	7.84	6.64	4.49	5.7	7.53	8.04	5.01
Merged-chr15-76247779-1	chr15	76247679	76247879	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	-412.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	4.44	4.53	7.99	5.23	0.0	6.59	5.65	4.54	6.29	2.51	2.51	2.51
Merged-chr9-3023237-1	chr9	3023137	3023337	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	15506.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.46	6.04	5.7	3.62	7.77	1.57	7.97	0.0	7.08	9.04	6.03	13.78
Merged-chr10-127514912-1	chr10	127514812	127515012	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-27.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	4.85	3.77	1.14	1.61	6.95	5.02	0.66	4.12	1.97	2.51	7.54	2.51
Merged-chr2-33049063-1	chr2	33048963	33049163	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	37394.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	6.86	4.02	5.13	4.02	4.09	3.76	6.64	5.5	3.54	1.0	6.53	5.95
Merged-chr10-105281229-1	chr10	105281129	105281329	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 8 of 11)	RMER15|LTR|ERVL	293250.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.04	6.04	2.28	1.61	2.45	3.76	3.99	1.77	11.01	7.03	9.04	2.19
Merged-chr12-76318633-1	chr12	76318533	76318733	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_138745, intron 27 of 27)	intron (NM_138745, intron 27 of 27)	-6258.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	4.44	7.29	9.13	5.63	4.91	2.2	0.66	4.07	9.64	7.53	2.01	9.08
Merged-chr11-77630540-1	chr11	77630440	77630640	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22725.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	4.44	7.04	1.14	4.42	3.27	7.53	3.65	3.93	8.46	2.51	4.02	4.39
Merged-chr5-34347304-1	chr5	34347204	34347404	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304270, intron 3 of 7)	intron (NM_001304270, intron 3 of 7)	10372.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.81	1.26	2.28	0.4	1.64	1.25	6.64	2.78	3.34	2.01	1.0	2.51
Merged-chr5-144312428-1	chr5	144312328	144312528	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025833, intron 3 of 13)	Tigger6a|DNA|TcMar-Tigger	35367.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	1.51	3.99	2.41	5.73	0.94	5.31	4.68	2.36	1.51	2.51	0.63
Merged-chr16-58556726-1	chr16	58556626	58556826	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-32473.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.08	8.3	5.13	7.64	9.82	5.96	3.65	4.49	3.54	1.51	3.01	0.0
Merged-chr11-100322836-3	chr11	100322712	100322912	+	601.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011508)	TTS (NM_011508)	2863.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	8.08	3.52	2.28	6.44	4.09	2.51	0.66	3.48	6.49	0.5	1.0	4.39
Merged-chr4-120909982-3	chr4	120909874	120910074	+	601.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	15031.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	7.67	6.29	7.42	4.83	6.14	6.27	5.65	8.27	8.85	9.04	11.56	7.83
Merged-chr7-114577116-2	chr7	114577033	114577233	+	601.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14161.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	2.83	6.79	8.56	7.24	6.55	5.02	4.32	7.09	5.51	6.53	11.56	2.82
Merged-chr9-55285471-1	chr9	55285371	55285571	+	601.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1846.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.81	0.25	1.14	0.8	9.0	5.64	6.64	5.24	2.75	2.51	0.5	2.82
Merged-chr14-20078615-3	chr14	20078515	20078715	+	601.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	4557.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	9.29	6.29	1.14	10.46	4.5	4.7	4.32	7.57	9.24	8.03	10.55	5.33
Merged-chr3-100999163-1	chr3	100999063	100999263	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-29500.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	4.04	6.54	0.57	1.61	9.82	5.64	4.65	6.25	7.08	10.04	11.05	7.83
Merged-chr7-28807842-1	chr7	28807742	28807942	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3048.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	10.09	3.77	1.14	1.21	5.32	4.08	6.98	4.96	3.15	2.51	14.57	5.01
Merged-chr3-142699722-1	chr3	142699622	142699822	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1326.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.4	5.28	0.0	7.64	8.18	5.02	7.64	5.13	7.67	4.52	1.51	6.27
Merged-chr13-30745402-1	chr13	30745302	30745502	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3831.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.23	1.01	1.14	3.62	6.55	7.21	6.98	5.94	6.29	5.52	6.03	1.25
Merged-chr11-80169351-1	chr11	80169251	80169451	+	601.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-14521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.86	2.52	9.7	6.44	8.18	4.39	1.33	2.21	7.28	9.54	5.53	9.4
Merged-chr2-4601439-1	chr2	4601339	4601539	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	41685.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	1.62	1.76	3.99	2.41	7.36	5.02	6.98	4.99	4.92	8.03	5.53	7.83
Merged-chr9-36970832-2	chr9	36970731	36970931	+	601.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148950, intron 2 of 11)	intron (NM_148950, intron 2 of 11)	137257.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	6.86	6.79	4.56	4.83	6.55	7.84	6.64	5.19	8.85	4.52	4.52	6.27
Merged-chr11-61760729-2	chr11	61760671	61760871	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144806, intron 1 of 11)	B3|SINE|B2	1317.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.25	6.54	9.13	3.22	6.14	11.6	4.32	4.4	9.64	5.52	6.03	5.01
Merged-chr10-79838224-1	chr10	79838124	79838324	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-16208.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	2.42	4.02	6.85	6.44	7.77	5.64	5.31	6.17	0.98	4.52	3.01	3.76
Merged-chr19-4301962-1	chr19	4301862	4302062	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4260.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	2.42	1.01	4.56	1.61	5.32	2.82	8.3	6.06	1.38	1.51	4.52	3.76
Merged-chr2-67378768-1	chr2	67378668	67378868	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67234.0	NM_001083919	241431.0	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.4	0.5	0.0	2.41	5.32	6.59	4.98	7.79	1.57	3.51	3.52	0.94
Merged-chr5-122639649-1	chr5	122639549	122639749	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4262.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.65	6.54	4.56	2.82	9.0	5.02	2.33	6.0	1.38	0.5	1.0	0.63
Merged-chr7-66357046-1	chr7	66356946	66357146	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	24678.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	3.63	6.04	4.56	4.02	4.91	5.96	3.99	7.04	7.67	2.01	12.06	3.76
Merged-chr11-5503469-1	chr11	5503369	5503569	+	601.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-17172.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	8.88	0.75	8.56	3.62	3.27	1.25	3.32	1.37	6.1	2.01	10.05	4.07
Merged-chr12-91314407-1	chr12	91314307	91314507	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	70002.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	4.04	0.5	2.28	3.22	6.14	1.57	3.32	5.3	3.74	2.01	6.53	3.13
Merged-chr14-48488564-1	chr14	48488464	48488664	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132324, intron 9 of 13)	L1MA4|LINE|L1	42212.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	2.42	2.26	9.13	6.84	6.95	5.96	8.97	4.57	1.77	4.52	4.02	6.27
Merged-chr4-3771946-2	chr4	3771863	3772063	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56999.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	8.08	1.01	6.28	1.21	4.91	3.14	3.32	9.62	6.88	2.51	15.58	8.77
Merged-chr3-127918222-1	chr3	127918122	127918322	+	601.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040552, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	2051.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.81	1.76	0.0	0.0	0.82	1.25	0.0	0.79	8.46	11.55	22.11	7.52
Merged-chr15-101976810-2	chr15	101976717	101976917	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22530.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.27	4.78	3.42	2.01	1.64	5.64	3.65	4.85	7.47	7.53	5.02	6.89
Merged-chrX-164967665-2	chrX	164967545	164967745	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 2 of 14)	intron (NM_029730, intron 2 of 14)	12730.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	6.06	5.79	12.55	0.4	6.95	9.41	3.99	4.29	7.08	4.52	11.05	6.58
Merged-chr10-53412367-1	chr10	53412267	53412467	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152767, intron 1 of 2)	Lx9|LINE|L1	2485.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.4	3.52	10.84	5.63	7.36	1.57	10.3	6.7	2.75	4.02	5.02	4.7
Merged-chr16-18813124-1	chr16	18813024	18813224	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	830.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	11.71	6.54	2.28	4.83	5.32	6.27	2.99	3.93	9.24	7.03	2.51	5.95
Merged-chr3-51337715-2	chr3	51337639	51337839	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	2905.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.81	4.28	2.28	3.62	7.77	8.15	2.99	3.76	6.69	4.02	4.02	6.27
Merged-chr9-121679681-1	chr9	121679581	121679781	+	601.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178677)	TTS (NM_178677)	25348.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	3.52	0.57	3.22	2.05	5.02	3.65	2.02	7.08	6.03	5.02	6.89
Merged-chr2-157036541-1	chr2	157036441	157036641	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164663, intron 6 of 14)	MIR3|SINE|MIR	-29466.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	7.67	1.51	2.28	5.63	8.18	11.29	3.99	5.47	5.31	5.52	3.52	1.57
Merged-chr15-83169881-2	chr15	83169785	83169985	+	601.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2323.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	7.67	7.29	4.56	9.65	6.55	4.08	2.99	5.33	7.67	5.52	7.03	3.45
Merged-chr5-25527607-2	chr5	25527503	25527703	+	601.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2415.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	8.08	6.04	7.99	5.23	2.45	7.53	4.65	4.65	7.67	2.51	3.01	6.58
Merged-chr2-94233814-1	chr2	94233714	94233914	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7564.0	NR_106139	102465777.0		NR_106139	ENSMUSG00000106336	Mir129b	mmu-mir-129b	microRNA 129b	ncRNA	0.0	2.77	1.71	0.0	2.86	5.02	6.31	4.99	6.49	4.02	2.51	1.57
Merged-chr11-31796379-1	chr11	31796279	31796479	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28168.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	1.62	5.28	2.28	1.61	6.95	2.82	5.65	4.23	2.56	5.52	3.52	6.27
Merged-chr1-178309028-1	chr1	178308928	178309128	+	601.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-10125.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	2.02	4.53	6.85	7.24	3.68	6.59	9.63	1.74	10.23	9.54	12.06	8.77
Merged-chrUn_JH584304-25326-1	chrUn_JH584304	25226	25426	+	601.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	34363.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.62	9.54	12.06	14.72
Merged-chr8-22227324-3	chr8	22227316	22227516	+	601.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019576, exon 1 of 5)	5' UTR (NM_019576, exon 1 of 5)	113.0	NM_001293688	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	5.25	4.53	0.0	0.8	6.55	4.08	4.65	4.74	4.72	1.51	5.53	1.88
Merged-chr15-66930525-3	chr15	66930408	66930608	+	601.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008681, exon 16 of 16)	3' UTR (NM_008681, exon 16 of 16)	39115.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	5.65	2.52	7.99	11.66	3.68	4.08	4.98	10.74	9.05	4.52	14.57	3.13
Merged-chr1-58714516-1	chr1	58714416	58714616	+	601.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_149256)	TTS (NR_149256)	1230.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.63	11.07	5.7	1.21	7.36	14.11	2.66	5.97	6.49	7.53	4.52	4.7
Merged-chr9-51007096-3	chr9	51007002	51007202	+	601.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1971.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	8.88	6.54	9.13	2.41	7.36	5.64	2.33	4.29	11.41	11.05	8.04	8.77
Merged-chr17-56758278-3	chr17	56758143	56758343	+	601.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-695.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	7.67	7.55	3.42	4.02	9.41	8.78	6.98	3.0	6.49	9.04	10.55	4.07
Merged-chr6-17788198-2	chr6	17788091	17788291	+	601.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	RMER1C|Other|Other	39021.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	1.21	2.26	2.85	4.02	10.64	10.66	4.32	4.85	9.83	6.03	7.03	5.95
Merged-chr1-52117377-1	chr1	52117277	52117477	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2061.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	4.44	2.01	1.71	6.03	0.0	4.39	0.0	2.02	6.49	3.51	10.05	5.01
Merged-chr18-9707081-1	chr18	9706981	9707181	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-567.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	2.83	1.26	2.28	2.01	0.41	5.33	1.66	4.82	0.98	3.01	0.0	0.94
Merged-chr3-95494498-1	chr3	95494398	95494598	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009709, exon 20 of 21)	exon (NM_009709, exon 20 of 21)	-4712.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	5.25	1.01	8.56	2.41	6.14	8.15	3.65	4.74	7.67	8.54	9.55	2.19
Merged-chr6-49332013-1	chr6	49331913	49332113	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001311112, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	12739.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	4.85	11.07	9.13	5.23	0.82	0.63	1.0	0.03	7.08	10.04	5.02	3.13
Merged-chr14-48447003-1	chr14	48446903	48447103	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132324, intron 1 of 13)	intron (NR_132324, intron 1 of 13)	651.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.81	2.01	1.14	4.02	4.91	2.51	1.33	4.12	5.31	8.03	2.01	3.45
Merged-chr18-35477988-1	chr18	35477888	35478088	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030749, intron 1 of 9)	RMER4B|LTR|ERVK	-8036.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	1.62	2.01	10.27	6.84	5.32	6.27	2.99	4.4	1.77	4.02	8.54	4.39
Merged-chr2-180954354-1	chr2	180954254	180954454	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141933, intron 1 of 5)	intron (NM_001141933, intron 1 of 5)	345.0	NM_001141933	58237.0	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	2.02	3.27	0.57	0.0	4.91	4.39	2.99	1.85	2.36	1.51	4.52	2.19
Merged-chr16-73435126-1	chr16	73435026	73435226	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	771977.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	1.21	0.5	0.0	0.0	5.32	5.64	0.66	7.37	2.56	2.51	1.0	0.31
Merged-chr10-19094065-1	chr10	19093965	19094165	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-47684.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	3.63	5.28	1.71	1.21	4.09	7.21	7.31	1.32	3.93	5.02	8.54	2.19
Merged-chr8-22935068-1	chr8	22934968	22935168	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 16 of 17)	C-rich|Low_complexity|Low_complexity	-39768.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	2.42	1.76	1.14	2.41	5.32	1.57	4.65	9.62	7.08	3.01	1.51	2.19
Merged-chr14-62839100-1	chr14	62839000	62839200	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	1379.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	7.27	4.02	1.14	2.41	3.68	1.88	1.99	5.36	2.75	4.02	8.54	5.01
Merged-chr6-38945203-1	chr6	38945103	38945303	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	26217.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.67	2.52	3.99	2.01	0.82	6.59	3.99	2.75	5.31	4.02	3.52	3.13
Merged-chr14-70988231-1	chr14	70988131	70988331	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98124.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.81	3.52	1.14	4.02	11.86	6.9	2.66	2.72	2.95	4.52	6.53	1.25
Merged-chr3-97751754-1	chr3	97751654	97751854	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 17 of 46)	CpG	16260.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	2.42	0.5	2.28	4.02	9.41	6.9	1.66	4.35	2.16	3.51	7.03	5.95
Merged-chr15-60835125-3	chr15	60835023	60835223	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10043.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	5.65	3.77	13.69	10.05	8.59	6.59	0.66	6.28	14.36	8.03	15.07	7.52
Merged-chr16-4633871-1	chr16	4633771	4633971	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 14 of 27)	intron (NM_030205, intron 14 of 27)	-6074.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	2.83	2.52	1.14	3.22	1.23	1.88	6.31	1.99	3.34	1.0	0.0	0.63
Merged-chr14-21758642-1	chr14	21758542	21758742	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359953, intron 1 of 5)	ID4_|SINE|ID	7090.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	3.63	1.26	2.28	7.24	6.14	5.02	2.99	8.27	2.75	4.52	5.53	2.82
Merged-chr5-143059523-1	chr5	143059423	143059623	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53497.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.06	4.78	11.41	8.45	6.55	5.33	7.31	4.74	7.28	5.52	12.06	3.13
Merged-chr12-17257137-1	chr12	17257037	17257237	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9458.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	3.23	1.51	1.14	1.61	4.91	12.86	1.99	4.91	9.64	3.01	6.53	3.45
Merged-chrX-106130911-1	chrX	106130811	106131011	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12364.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	2.83	5.28	8.56	4.83	4.09	1.57	2.99	3.45	3.93	1.0	3.52	2.51
Merged-chr5-3370216-1	chr5	3370116	3370316	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	RLTR11D|LTR|ERVK	26323.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.83	2.52	1.71	2.41	4.91	5.64	4.65	5.44	6.88	12.05	2.01	5.95
Merged-chr15-63953478-1	chr15	63953378	63953578	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360038, intron 3 of 11)	intron (NM_001360038, intron 3 of 11)	39017.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	1.62	0.5	1.14	1.61	1.23	6.27	1.99	4.74	2.16	3.01	5.02	1.25
Merged-chr2-34108509-1	chr2	34108409	34108609	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_130173)	promoter-TSS (NR_130173)	-774.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	3.23	6.29	1.71	3.62	0.82	5.33	5.98	7.32	7.28	4.02	18.59	3.13
Merged-chr11-69670857-1	chr11	69670757	69670957	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159375, intron 2 of 10)	intron (NM_001159375, intron 2 of 10)	1566.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	5.25	4.02	11.41	3.62	7.77	9.72	9.3	3.36	12.39	15.06	10.05	8.14
Merged-chr10-120365770-1	chr10	120365670	120365870	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23753.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	5.65	1.26	6.28	7.24	2.86	5.02	1.99	4.88	3.15	4.52	1.51	2.19
Merged-chr14-103374989-1	chr14	103374889	103375089	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28189.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.65	1.01	7.99	2.41	2.05	5.02	7.31	4.85	6.69	2.01	10.05	1.25
Merged-chr5-97001752-1	chr5	97001652	97001852	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	ID_B1|SINE|B4	4063.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.81	3.52	1.14	0.8	4.91	0.94	1.33	4.57	3.15	2.01	2.51	3.45
Merged-chr9-70862718-1	chr9	70862618	70862818	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	72090.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.04	2.01	5.7	1.21	2.45	3.76	4.65	6.7	3.54	1.51	7.54	1.88
Merged-chr7-19466852-1	chr7	19466752	19466952	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8358.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.85	1.26	1.71	1.61	9.82	2.82	1.33	3.73	8.65	3.01	8.04	6.89
Merged-chr9-17987814-1	chr9	17987714	17987914	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-304453.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	15.34	30.18	17.68	12.07	10.23	9.09	5.98	6.45	11.01	13.56	7.54	14.72
Merged-chr18-52768885-1	chr18	52768785	52768985	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199154, intron 1 of 10)	CpG	741.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	4.85	2.52	3.99	10.86	7.36	0.31	10.63	4.12	3.34	5.02	3.01	2.82
Merged-chr4-40113396-1	chr4	40113296	40113496	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29869.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.25	3.77	5.13	4.42	5.73	4.7	3.32	4.26	2.16	1.51	12.56	5.01
Merged-chr2-45758222-1	chr2	45758122	45758322	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61617.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.04	6.54	6.85	8.85	8.18	1.25	4.65	4.85	2.75	1.51	1.0	5.33
Merged-chr10-84398667-1	chr10	84398567	84398767	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	MTD|LTR|ERVL-MaLR	41804.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.06	2.52	5.7	3.62	2.05	5.33	5.31	6.73	4.13	2.51	1.0	1.57
Merged-chr1-171843835-1	chr1	171843735	171843935	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4138.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	2.02	6.29	0.57	4.02	4.09	6.9	2.66	2.89	4.13	2.51	4.52	8.77
Merged-chr13-64162574-1	chr13	64162474	64162674	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019986, intron 1 of 7)	intron (NM_019986, intron 1 of 7)	708.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.23	4.02	5.13	3.22	6.95	6.9	1.33	3.2	4.52	7.03	5.53	5.64
Merged-chr13-58488696-1	chr13	58488596	58488796	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85353.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	8.48	4.02	4.56	4.83	2.05	4.39	3.99	5.21	2.56	5.02	2.01	6.58
Merged-chr11-95001261-2	chr11	95001132	95001332	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172261, exon 5 of 10)	exon (NM_172261, exon 5 of 10)	-8647.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.81	3.02	2.28	2.41	4.91	6.27	6.64	4.51	3.34	6.53	8.54	3.45
Merged-chr1-174239966-1	chr1	174239866	174240066	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011465, intron 43 of 51)	intron (NM_011465, intron 43 of 51)	11010.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	1.62	2.52	3.42	0.8	4.5	10.03	1.33	4.49	0.39	0.0	0.5	1.25
Merged-chr17-47371487-1	chr17	47371387	47371587	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183086, intron 1 of 6)	intron (NM_183086, intron 1 of 6)	2290.0	NM_183086	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	2.42	3.02	6.85	5.63	4.91	5.02	1.0	2.41	1.77	2.01	1.0	1.25
Merged-chr3-90117880-1	chr3	90117780	90117980	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029937, intron 3 of 39)	RSINE1|SINE|B4	13748.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	5.25	4.53	6.85	1.61	3.68	5.33	3.32	5.3	2.16	3.51	3.52	3.45
Merged-chr19-6978468-1	chr19	6978368	6978568	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008020, intron 3 of 5)	intron (NM_008020, intron 3 of 5)	924.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	1.62	2.52	3.42	1.61	4.09	5.02	5.31	4.15	7.87	1.51	3.01	3.13
Merged-chr3-88432776-1	chr3	88432676	88432876	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7635.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	1.62	2.26	1.14	0.0	8.59	4.39	1.33	4.74	5.31	2.51	2.51	4.39
Merged-chr16-18247735-2	chr16	18247623	18247823	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011239, intron 1 of 5)	intron (NM_011239, intron 1 of 5)	971.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	6.46	6.54	9.13	3.62	2.45	4.39	6.98	4.77	9.44	2.51	6.03	7.21
Merged-chr6-28262821-1	chr6	28262721	28262921	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1220.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	6.06	9.31	9.13	2.41	4.09	12.86	6.98	4.12	9.24	17.07	9.04	6.58
Merged-chr9-106890573-1	chr9	106890473	106890673	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029103, intron 2 of 3)	intron (NM_029103, intron 2 of 3)	1365.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.81	2.77	5.13	4.02	4.5	3.76	5.31	0.93	1.97	5.02	1.51	3.13
Merged-chr10-125318731-1	chr10	125318631	125318831	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-9915.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.81	1.51	12.55	8.85	6.55	2.51	3.99	7.21	3.34	3.51	7.03	3.76
Merged-chr14-31472609-2	chr14	31472525	31472725	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359847)	TTS (NM_001359847)	22133.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	7.67	3.77	10.27	2.01	4.09	1.88	1.99	3.14	8.46	17.57	4.02	11.9
Merged-chr14-55854633-1	chr14	55854533	55854733	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040072, intron 1 of 7)	intron (NM_001040072, intron 1 of 7)	518.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	5.25	3.27	3.42	6.03	1.23	6.59	1.66	5.58	2.75	4.52	3.01	0.0
Merged-chr4-131875477-1	chr4	131875377	131875577	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020587, intron 1 of 5)	intron (NM_020587, intron 1 of 5)	1838.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	8.88	6.29	3.42	3.22	6.14	6.27	3.99	5.72	4.13	6.03	5.02	3.13
Merged-chr9-40268070-1	chr9	40267970	40268170	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1146.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	3.23	1.01	0.0	5.63	0.82	4.08	3.32	3.45	9.44	8.03	7.03	8.46
Merged-chr15-94588346-1	chr15	94588246	94588446	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008971, intron 1 of 8)	intron (NM_008971, intron 1 of 8)	1478.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	3.63	2.52	5.7	3.62	2.86	3.45	1.99	4.68	5.7	0.5	7.54	1.88
Merged-chr12-91587115-1	chr12	91587015	91587215	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2534.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.81	3.27	1.14	1.21	4.09	3.14	1.0	6.36	1.77	2.01	0.5	4.7
Merged-chr1-84934489-1	chr1	84934389	84934589	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	594.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.81	2.77	1.14	4.02	2.45	4.7	5.65	6.42	2.95	3.51	1.0	7.83
Merged-chr12-24680923-1	chr12	24680823	24681023	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001161807, exon 1 of 5)	5' UTR (NM_001161807, exon 1 of 5)	872.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	6.06	2.52	2.85	1.61	9.0	3.14	2.33	6.56	0.39	3.51	0.5	3.45
Merged-chr3-146645696-1	chr3	146645596	146645796	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029144)	TTS (NM_029144)	3764.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	4.04	3.52	1.14	1.61	3.68	3.45	4.98	3.11	3.15	1.0	5.02	2.82
Merged-chr6-99440059-1	chr6	99439959	99440159	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-4714.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.46	4.28	2.85	5.23	7.36	2.51	2.99	4.77	0.39	4.02	5.53	3.13
Merged-chr14-86781788-1	chr14	86781688	86781888	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 25 of 27)	intron (NM_019670, intron 25 of 27)	359436.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.83	3.52	1.71	2.41	4.09	2.82	3.32	6.31	2.16	0.0	1.51	0.94
Merged-chr14-30218261-1	chr14	30218161	30218361	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	135225.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	7.27	5.53	4.56	2.41	5.32	8.47	1.66	4.77	4.33	0.5	5.53	2.19
Merged-chr4-46689597-1	chr4	46689497	46689697	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081141, intron 13 of 18)	intron (NM_001081141, intron 13 of 18)	-39398.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	5.65	2.77	0.0	2.41	3.27	4.7	1.33	3.14	8.46	3.51	5.53	5.95
Merged-chr11-50437346-1	chr11	50437246	50437446	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6235.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.4	2.52	0.0	3.22	0.0	0.94	3.99	2.47	0.98	1.51	0.5	0.94
Merged-chr11-69834354-1	chr11	69834254	69834454	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198862, exon 1 of 7)	exon (NM_198862, exon 1 of 7)	495.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	4.44	1.26	1.14	1.21	8.18	2.82	4.98	4.93	4.33	3.51	5.02	3.76
Merged-chr5-30998566-1	chr5	30998466	30998666	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	29889.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	7.27	0.75	1.71	6.44	3.27	1.25	2.66	3.95	7.28	6.53	9.55	3.13
Merged-chr4-63883443-1	chr4	63883343	63883543	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22159.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.81	0.5	0.0	0.8	0.82	0.63	6.98	6.36	2.75	3.01	2.51	0.63
Merged-chr14-54388904-1	chr14	54388804	54389004	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	L2|LINE|L2	20568.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.62	3.02	3.99	1.61	6.55	2.51	8.3	4.37	1.97	0.0	0.5	1.57
Merged-chr4-43577468-1	chr4	43577368	43577568	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172692, intron 1 of 16)	intron (NM_172692, intron 1 of 16)	-1267.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	4.04	2.01	5.13	3.22	2.05	1.88	3.65	2.58	3.93	4.52	0.5	5.64
Merged-chr2-29412619-1	chr2	29412519	29412719	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	34105.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	1.62	4.53	6.85	3.62	0.82	1.25	3.65	7.96	7.87	1.0	1.51	1.88
Merged-chr1-13342846-1	chr1	13342746	13342946	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	29583.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.44	4.02	1.71	6.84	5.32	6.59	3.99	5.78	3.74	5.52	11.56	3.76
Merged-chr3-122209166-1	chr3	122209066	122209266	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36391.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.23	3.52	3.42	3.22	4.91	2.51	7.31	5.21	7.87	6.53	4.02	4.39
Merged-chr19-59389369-1	chr19	59389269	59389469	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43589.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	5.25	7.04	2.28	1.61	2.45	2.2	1.33	4.71	8.26	7.53	4.52	9.4
Merged-chr15-73637743-1	chr15	73637643	73637843	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12999.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	2.42	3.02	9.13	3.22	4.91	2.2	4.65	6.03	6.49	2.51	13.57	3.76
Merged-chr15-89212217-1	chr15	89212117	89212317	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	658.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	2.02	2.26	3.99	0.4	2.86	2.82	9.3	4.68	6.1	0.0	4.52	2.82
Merged-chr11-88954224-2	chr11	88954131	88954331	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029023, intron 1 of 12)	RSINE1|SINE|B4	1211.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	5.65	7.8	16.54	10.46	7.77	6.27	8.3	4.23	6.29	8.03	6.53	7.21
Merged-chr9-95514487-1	chr9	95514387	95514587	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL-int|LTR|ERVL	-2491.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	2.02	2.52	0.0	2.41	2.45	3.14	4.65	1.77	11.8	9.04	6.03	4.07
Merged-chr5-76322459-1	chr5	76322359	76322559	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310637, intron 2 of 4)	intron (NM_001310637, intron 2 of 4)	8697.0	NM_001310637	79455.0	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	3.23	1.76	1.14	1.61	1.64	0.63	5.65	6.31	2.36	1.51	3.01	1.88
Merged-chr1-151709010-1	chr1	151708910	151709110	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 11 of 13)	intron (NM_022018, intron 11 of 13)	45717.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	2.42	0.5	1.14	0.8	1.64	0.63	4.65	6.11	2.56	0.5	1.51	0.94
Merged-chr2-147178330-1	chr2	147178230	147178430	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5753.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	5.25	4.28	1.14	2.82	6.95	11.29	5.65	2.64	4.13	7.53	14.07	5.64
Merged-chr16-33621506-2	chr16	33621386	33621586	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134251, intron 8 of 12)	intron (NM_134251, intron 8 of 12)	-62980.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	3.63	7.29	15.4	10.86	1.64	0.94	0.0	2.75	7.67	1.51	10.55	5.01
Merged-chr13-20352455-1	chr13	20352355	20352555	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080288, intron 14 of 21)	Lx10|LINE|L1	-120535.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.81	4.78	9.7	9.25	2.45	0.0	0.66	1.46	3.74	0.0	6.53	4.07
Merged-chr7-99917431-1	chr7	99917331	99917531	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001164258, exon 19 of 19)	exon (NM_001164258, exon 19 of 19)	58213.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	6.46	6.54	1.14	2.41	0.0	8.47	4.32	1.54	3.15	2.01	3.01	0.31
Merged-chr2-119351057-2	chr2	119350980	119351180	+	600.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026929)	promoter-TSS (NM_026929)	-162.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	9.69	5.03	5.13	1.61	6.14	6.59	4.98	4.77	5.31	4.52	5.53	5.01
Merged-chr8-68203562-2	chr8	68203460	68203660	+	600.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72968.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	15.75	7.29	7.42	3.62	8.18	8.78	6.98	6.93	9.24	8.03	7.03	0.31
Merged-chr7-120670347-3	chr7	120670251	120670451	+	600.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040137)	promoter-TSS (NM_001040137)	-8.0	NM_001040136	67983.0	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	4.85	4.02	6.28	1.61	10.23	6.9	2.99	5.19	7.87	21.59	11.56	4.39
Merged-chr11-83473934-2	chr11	83473849	83474049	+	600.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027427, intron 1 of 15)	intron (NM_027427, intron 1 of 15)	841.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	8.88	6.29	5.7	6.44	14.32	6.9	4.32	6.7	6.29	2.51	7.03	6.89
Merged-chr7-110930632-2	chr7	110930529	110930729	+	600.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194464, intron 2 of 20)	intron (NM_194464, intron 2 of 20)	15558.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	6.06	2.77	3.99	2.41	5.32	8.78	3.99	4.99	8.65	10.04	8.54	8.46
Merged-chr5-143434608-2	chr5	143434495	143434695	+	600.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29898.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.86	5.03	5.7	2.01	2.45	5.96	7.97	5.16	11.8	4.52	11.56	6.58
Merged-chr5-149376059-2	chr5	149375993	149376193	+	600.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35656.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	6.86	1.51	3.42	9.65	6.55	5.33	5.31	3.62	6.29	3.01	10.55	9.4
Merged-chr17-23535237-3	chr17	23535140	23535340	+	600.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15559.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	5.65	6.54	15.4	8.04	11.05	10.66	5.65	5.38	9.24	5.02	5.02	8.14
Merged-chr14-77848584-1	chr14	77848484	77848684	+	600.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 3 of 5)	ORR1B2|LTR|ERVL-MaLR	26333.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	4.85	3.02	0.0	6.44	3.27	4.7	3.32	2.72	9.83	10.04	22.61	4.07
Merged-chr15-74528299-1	chr15	74528199	74528399	+	600.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359759, intron 1 of 30)	MIR|SINE|MIR	12103.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	5.65	1.76	4.56	1.61	3.68	5.02	5.65	5.72	1.77	3.01	5.53	4.7
Merged-chr2-154215401-1	chr2	154215301	154215501	+	600.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001012392, intron 12 of 15)	intron (NM_001012392, intron 12 of 15)	-8341.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	10.5	0.0	1.14	0.0	10.64	6.9	6.31	4.96	2.75	6.03	13.06	4.07
Merged-chr15-6525613-1	chr15	6525513	6525713	+	600.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54234.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.46	5.03	0.57	0.0	5.73	4.39	4.65	3.2	2.36	3.51	2.01	3.45
Merged-chr10-117217433-3	chr10	117217367	117217567	+	600.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026570, exon 5 of 7)	exon (NM_026570, exon 5 of 7)	7040.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	4.85	5.03	3.99	7.24	8.18	5.02	1.0	3.56	11.6	10.54	9.04	5.95
Merged-chr5-150441937-1	chr5	150441837	150442037	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172887, intron 46 of 60)	B3|SINE|B2	60282.0	NR_024513	194292.0	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	3.23	4.78	9.13	5.23	9.41	5.96	7.64	4.63	3.15	1.0	4.02	3.76
Merged-chr8-24595341-1	chr8	24595241	24595441	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008324, intron 1 of 9)	URR1B|DNA|hAT-Charlie	325.0	NM_001293690	15930.0	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	3.23	1.51	0.0	6.84	2.45	5.64	4.65	3.98	7.87	3.01	9.55	5.64
Merged-chr14-8004223-1	chr14	8004123	8004323	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	1257.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	4.85	4.02	5.7	5.63	2.86	5.96	1.99	3.98	3.34	7.03	5.02	2.51
Merged-chr8-71755199-2	chr8	71755101	71755301	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29520.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	8.88	5.28	9.13	14.88	0.0	0.0	0.0	0.67	11.8	4.02	10.05	13.47
Merged-chr17-66094981-1	chr17	66094881	66095081	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	6578.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	3.63	3.77	10.27	4.02	6.95	1.88	3.32	4.35	5.51	7.53	6.03	5.33
Merged-chr8-126797835-2	chr8	126797756	126797956	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51164.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.02	4.53	7.42	6.84	12.68	3.45	3.99	5.47	7.67	5.02	6.53	9.4
Merged-chr1-84935025-1	chr1	84934925	84935125	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	58.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.83	2.26	1.14	9.65	4.5	2.51	3.32	3.7	2.95	6.03	6.53	4.39
Merged-chr5-4757115-2	chr5	4757063	4757263	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	1053.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	1.21	4.02	2.28	3.62	2.05	4.39	4.32	4.82	2.36	0.5	6.53	6.27
Merged-chr10-75182644-2	chr10	75182558	75182758	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081412, exon 23 of 23)	3' UTR (NM_001081412, exon 23 of 23)	-29415.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	7.67	10.06	8.56	5.63	4.09	7.53	4.32	4.51	5.51	2.01	6.53	7.52
Merged-chr16-55506081-1	chr16	55505981	55506181	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11350.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	6.46	1.01	1.14	3.62	7.36	5.02	1.99	4.65	5.7	7.03	3.52	7.21
Merged-chr18-36019000-2	chr18	36018888	36019088	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	54158.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	11.31	7.55	4.56	6.44	6.14	3.76	3.32	4.04	5.31	9.54	6.03	5.33
Merged-chr2-35906626-2	chr2	35906523	35906723	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	73001.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	7.27	6.54	13.12	9.65	8.18	5.96	3.65	3.25	6.49	10.54	8.04	5.01
Merged-chr5-137683825-1	chr5	137683725	137683925	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303271, intron 1 of 12)	PB1D9|SINE|Alu	928.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	12.11	3.02	4.56	5.63	8.59	9.72	3.32	4.99	6.49	2.51	5.02	4.39
Merged-chr8-69585020-1	chr8	69584920	69585120	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	40155.0	NM_001045553	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	10.09	20.88	11.98	12.07	0.82	1.57	2.33	5.78	4.13	1.0	5.53	4.07
Merged-chr18-10533780-2	chr18	10533680	10533880	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	76572.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	2.83	4.02	6.85	0.4	12.68	6.27	6.64	4.71	9.24	7.03	6.53	5.64
Merged-chr12-86974733-1	chr12	86974633	86974833	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13943.0	NM_001080943	238331.0	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	6.06	1.51	0.0	5.23	7.36	5.02	3.65	4.99	7.28	5.02	4.52	1.25
Merged-chr9-57762742-3	chr9	57762592	57762792	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3168.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	6.46	9.06	11.98	3.62	4.91	8.15	3.65	3.34	6.29	4.52	5.53	4.39
Merged-chr6-143349183-2	chr6	143349075	143349275	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103287.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	8.08	2.01	5.7	5.63	5.73	4.08	4.98	12.42	3.74	6.53	16.08	6.58
Merged-chr17-21536927-2	chr17	21536837	21537037	+	600.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144515, intron 1 of 4)	RLTR19|LTR|ERVK	-1059.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	1.62	3.02	0.0	6.84	6.14	6.27	0.0	4.6	11.21	9.04	13.06	5.64
Merged-chr11-97440455-2	chr11	97440383	97440583	+	600.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-9677.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	9.69	4.28	5.13	4.42	9.41	8.47	5.98	5.16	9.64	2.51	9.55	4.39
Merged-chr10-62213706-2	chr10	62213614	62213814	+	600.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	17504.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	1.21	3.27	8.56	6.44	11.45	8.47	4.98	7.09	7.28	12.55	10.55	2.82
Merged-chr7-4309784-1	chr7	4309684	4309884	+	600.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-27940.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.62	6.03	9.55	8.77
Merged-chr2-169780131-1	chr2	169780031	169780231	+	600.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	146485.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	2.85	0.0	0.0	0.0	0.0	0.48	8.26	10.04	11.56	7.83
Merged-chr8-72136424-1	chr8	72136324	72136524	+	600.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1132.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	3.23	3.77	10.84	3.62	6.55	5.96	7.97	4.77	7.67	5.52	7.54	5.33
Merged-chr13-51958550-2	chr13	51958455	51958655	+	600.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111880.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.23	3.02	10.27	3.22	6.95	5.96	1.33	4.99	4.72	8.54	13.06	9.08
Merged-chr1-74763266-3	chr1	74763179	74763379	+	600.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8613.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	8.48	7.29	5.7	6.84	9.0	13.17	3.32	5.27	6.1	9.54	13.57	5.95
Merged-chr10-91167072-3	chr10	91166956	91167156	+	600.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080129, intron 1 of 8)	B3|SINE|B2	3494.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	8.08	6.29	9.13	7.24	5.73	5.33	4.65	5.58	12.78	12.05	10.55	3.45
Merged-chr4-133203544-2	chr4	133203452	133203652	+	600.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7897.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	11.71	3.77	4.56	2.41	4.91	12.86	7.97	4.23	8.26	12.55	6.53	1.57
Merged-chr4-40239179-2	chr4	40239078	40239278	+	600.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	647.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	4.04	6.04	2.28	4.42	6.14	7.53	8.64	5.3	8.85	12.05	10.55	6.27
Merged-chr2-173768920-1	chr2	173768820	173769020	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31349.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	1.21	2.01	3.42	4.42	4.91	1.25	0.0	4.91	5.9	1.0	3.52	3.45
Merged-chr4-33513588-1	chr4	33513488	33513688	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75507.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	5.25	4.53	0.0	4.02	2.05	5.33	5.98	3.98	1.18	2.01	2.01	2.82
Merged-chr4-55823747-1	chr4	55823647	55823847	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-291272.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.81	0.0	1.14	4.83	3.68	0.63	3.65	4.35	0.39	2.01	1.51	2.51
Merged-chr5-139705345-1	chr5	139705245	139705445	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	30988.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.04	1.76	3.99	3.22	4.91	1.25	5.31	6.14	5.9	3.51	1.0	10.02
Merged-chr6-125092570-1	chr6	125092470	125092670	+	600.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3411.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	4.04	11.07	5.7	1.61	3.68	3.45	2.99	3.0	7.47	3.51	6.53	3.45
Merged-chr15-58108423-1	chr15	58108323	58108523	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027435, exon 16 of 28)	exon (NM_027435, exon 16 of 28)	26659.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	1.62	3.02	3.42	1.61	4.09	0.63	4.98	2.02	7.87	10.54	21.1	6.58
Merged-chr9-13651784-1	chr9	13651684	13651884	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-10676.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	1.62	1.51	0.0	2.01	6.14	2.2	6.64	4.71	4.13	3.51	2.51	2.51
Merged-chr4-48407502-1	chr4	48407402	48407602	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281978, intron 13 of 18)	B1_Mus1|SINE|Alu	65961.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	4.04	2.01	0.57	1.61	0.82	5.33	6.31	3.62	10.23	4.52	5.02	5.95
Merged-chr11-64836779-1	chr11	64836679	64836879	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-142256.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.23	4.78	5.7	3.22	0.0	0.31	0.0	0.56	9.05	13.56	4.02	4.39
Merged-chr2-32859296-1	chr2	32859196	32859396	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12059.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	1.62	4.28	7.42	4.02	6.14	10.03	6.98	2.97	7.47	6.53	3.01	4.7
Merged-chr10-128062450-1	chr10	128062350	128062550	+	600.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	3468.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	8.08	9.06	7.99	6.03	4.09	4.39	0.33	5.44	3.54	6.03	5.02	2.51
Merged-chr2-45194141-1	chr2	45194041	45194241	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76699.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.04	3.02	1.14	0.0	2.45	7.53	4.65	4.18	3.74	8.54	3.01	4.07
Merged-chrX-38390276-1	chrX	38390176	38390376	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	66184.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.0	1.01	2.28	3.22	5.73	4.39	2.66	7.43	1.18	2.01	0.5	0.63
Merged-chr15-25341871-1	chr15	25341771	25341971	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71893.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.42	0.5	1.14	1.61	8.18	5.02	4.32	6.0	4.72	4.02	2.51	5.95
Merged-chr8-13675960-1	chr8	13675860	13676060	+	600.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1627.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.67	3.52	10.27	4.83	5.73	2.2	4.98	3.28	4.72	3.51	2.51	4.07
Merged-chr13-110902971-1	chr13	110902871	110903071	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-528.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	5.25	6.54	1.71	9.65	2.45	3.76	6.31	8.66	4.13	8.03	12.06	6.89
Merged-chr6-127467995-1	chr6	127467895	127468095	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346512, intron 1 of 5)	intron (NM_001346512, intron 1 of 5)	14368.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.81	2.77	1.71	0.0	2.05	2.2	5.31	4.54	3.54	2.51	3.52	3.76
Merged-chr3-122151030-1	chr3	122150930	122151130	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 36 of 49)	intron (NM_007378, intron 36 of 49)	-94527.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	2.42	1.26	3.42	6.44	0.82	3.14	5.98	5.64	1.77	3.51	2.01	0.63
Merged-chr10-8387029-1	chr10	8386929	8387129	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131796.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.4	0.75	3.42	0.0	4.09	3.45	1.0	3.62	1.57	4.02	4.52	0.94
Merged-chr2-70963057-1	chr2	70962957	70963157	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55317.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.4	1.01	0.0	0.0	2.45	1.25	1.33	1.79	7.47	9.04	16.08	8.77
Merged-chr3-139074062-1	chr3	139073962	139074162	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	1139.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	1.21	9.06	5.7	3.62	4.91	2.51	3.32	5.02	6.69	5.52	5.02	10.02
Merged-chr7-73452426-1	chr7	73452326	73452526	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081345, intron 32 of 38)	intron (NM_001081345, intron 32 of 38)	-76652.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	1.76	3.42	6.44	5.32	6.59	4.32	5.38	1.77	1.51	7.03	3.76
Merged-chr6-124898127-1	chr6	124898027	124898227	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102a|DNA|hAT-Charlie	-9927.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	4.44	6.29	3.99	0.8	6.14	8.47	6.98	4.15	11.8	8.54	12.56	3.13
Merged-chr9-75100528-1	chr9	75100428	75100628	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	29322.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.81	3.02	5.7	1.61	5.73	5.64	9.97	6.42	3.74	0.5	6.03	5.01
Merged-chr9-118934043-1	chr9	118933943	118934143	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133710, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	7507.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.4	1.01	4.56	4.02	6.55	5.64	1.99	5.38	4.33	0.5	1.0	0.0
Merged-chrX-152151897-1	chrX	152151797	152151997	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	intron (NM_001114664, intron 1 of 14)	7629.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	2.42	6.79	4.56	1.61	12.27	7.53	1.33	5.02	6.49	4.52	3.52	4.07
Merged-chr16-91374403-1	chr16	91374303	91374503	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	1620.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.23	3.02	5.7	5.23	4.5	5.02	2.99	5.92	8.65	6.03	12.06	6.58
Merged-chr6-5497949-1	chr6	5497849	5498049	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1671.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	1.01	4.56	4.83	5.73	3.76	0.66	6.59	3.54	0.5	3.52	1.57
Merged-chr1-39893329-1	chr1	39893229	39893429	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7584.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.63	2.26	3.42	8.45	5.32	7.84	0.66	4.54	8.06	6.03	3.01	0.94
Merged-chr1-161767357-1	chr1	161767257	161767457	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21138.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	9.29	4.53	0.57	2.82	4.09	3.76	2.66	3.06	11.01	5.52	5.02	9.08
Merged-chr4-108870236-1	chr4	108870136	108870336	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8834.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	3.23	5.79	7.42	6.44	11.45	3.14	4.32	4.49	4.33	4.52	7.54	5.95
Merged-chrX-60021246-1	chrX	60021146	60021346	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305797, intron 5 of 6)	ORR1D2|LTR|ERVL-MaLR	21782.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	1.62	0.5	1.14	0.4	2.86	5.64	7.64	5.44	3.54	3.01	10.05	2.82
Merged-chr1-136051659-1	chr1	136051559	136051759	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001270609)	TTS (NM_001270609)	855.0	NM_001270609	226439.0	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding	2.42	6.04	2.28	2.01	4.5	7.84	2.66	4.91	4.52	6.03	10.55	7.21
Merged-chr6-57499376-1	chr6	57499276	57499476	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	36050.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	2.02	3.27	5.13	4.02	4.91	4.39	1.33	7.77	5.7	8.03	3.01	5.95
Merged-chr16-93884547-1	chr16	93884447	93884647	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028083, exon 2 of 14)	exon (NM_028083, exon 2 of 14)	646.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.63	3.02	0.57	1.61	5.73	4.08	5.98	1.43	11.21	10.04	2.01	6.89
Merged-chr9-124025428-1	chr9	124025328	124025528	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	3457.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	1.62	3.02	5.7	3.62	2.45	5.96	4.98	6.5	1.57	2.01	0.0	2.19
Merged-chr4-43966568-1	chr4	43966468	43966668	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8866.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	1.21	3.52	0.0	0.4	2.05	5.33	0.0	5.1	10.42	0.0	4.52	1.57
Merged-chr11-74652173-1	chr11	74652073	74652273	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	2678.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	1.26	3.99	1.61	2.05	5.64	3.32	6.79	10.03	6.53	1.51	2.82
Merged-chr13-119616178-1	chr13	119616078	119616278	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7641.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	1.62	1.76	0.0	1.21	4.5	3.45	0.66	1.85	0.79	2.51	0.5	1.25
Merged-chr10-76350055-1	chr10	76349955	76350155	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-4764.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	6.46	2.52	1.14	2.41	6.14	1.57	3.32	5.64	2.36	3.51	10.05	4.07
Merged-chr13-36696503-1	chr13	36696403	36696603	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37974.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.5	0.57	0.0	0.0	0.0	0.33	0.42	7.47	10.54	4.02	5.95
Merged-chr15-27666937-1	chr15	27666837	27667037	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14605.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	2.42	3.52	1.14	0.0	3.68	5.64	1.33	4.21	2.56	6.03	5.53	4.39
Merged-chr10-118104182-1	chr10	118104082	118104282	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37605.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	1.62	1.51	0.0	1.61	5.73	3.45	6.64	3.2	7.28	3.51	5.02	2.82
Merged-chr2-119242467-1	chr2	119242367	119242567	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016907, intron 2 of 10)	intron (NM_016907, intron 2 of 10)	5107.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.81	0.25	0.0	0.0	0.0	0.63	2.66	0.0	7.08	10.54	6.53	8.46
Merged-chr12-69356710-1	chr12	69356610	69356810	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025441, intron 1 of 32)	MIRb|SINE|MIR	466.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	3.23	4.02	5.13	5.63	6.55	5.64	5.98	5.19	4.33	5.02	5.02	4.7
Merged-chr16-36798519-1	chr16	36798419	36798619	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134111, intron 5 of 5)	ORR1A3-int|LTR|ERVL-MaLR	10186.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	4.04	6.04	17.11	3.22	8.59	9.09	3.65	6.36	1.97	4.02	8.04	1.25
Merged-chr15-11966527-1	chr15	11966427	11966627	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040447)	promoter-TSS (NR_040447)	-535.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	2.42	10.31	3.99	8.04	6.95	5.64	2.33	6.73	5.51	3.51	4.02	3.13
Merged-chr14-118621269-1	chr14	118621169	118621369	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 7 of 29)	RLTR22_Mur|LTR|ERVK	-28797.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	4.04	2.52	4.56	5.63	0.82	1.25	6.64	5.47	6.69	1.0	2.01	3.76
Merged-chr7-25771226-1	chr7	25771126	25771326	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190974, intron 9 of 18)	intron (NM_001190974, intron 9 of 18)	-16467.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	2.42	7.04	3.99	9.65	2.45	3.14	7.97	3.39	4.52	3.01	6.03	3.13
Merged-chr2-154687852-1	chr2	154687752	154687952	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	URR1A|DNA|hAT-Charlie	30826.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	3.23	1.51	1.71	4.42	3.68	3.76	3.65	5.83	2.95	3.01	3.01	3.76
Merged-chr6-72144854-1	chr6	72144754	72144954	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21657.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	1.21	0.75	6.85	0.4	4.09	2.82	4.32	4.23	1.77	3.01	6.53	4.07
Merged-chr2-25185926-2	chr2	25185816	25186016	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5158.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	8.88	3.27	1.71	6.84	4.91	5.33	8.3	4.79	9.64	8.03	4.52	5.01
Merged-chr19-58904192-1	chr19	58904092	58904292	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	7567.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	3.23	2.01	2.28	0.4	6.55	1.25	1.66	4.63	9.05	5.02	10.05	2.82
Merged-chr10-18318647-1	chr10	18318547	18318747	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-83666.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	4.85	3.02	5.13	3.62	4.09	5.96	5.31	5.16	2.16	4.02	3.52	1.25
Merged-chr11-45752056-1	chr11	45751956	45752156	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56027.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.02	3.77	2.28	3.22	2.05	6.27	1.66	4.91	2.75	3.01	2.51	5.95
Merged-chr5-124111183-1	chr5	124111083	124111283	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1138.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	3.23	2.26	2.28	3.22	7.36	8.15	5.98	4.82	9.44	6.53	7.54	3.45
Merged-chr7-35123687-1	chr7	35123587	35123787	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4394.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	10.09	3.27	2.85	5.63	15.14	4.08	0.33	3.73	2.16	2.01	9.04	0.94
Merged-chr2-164518005-1	chr2	164517905	164518105	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20480.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	6.46	7.55	3.99	4.83	4.91	10.35	1.33	5.41	9.05	3.01	3.01	2.51
Merged-chr17-24658302-2	chr17	24658181	24658381	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001099664, exon 1 of 2)	exon (NM_001099664, exon 1 of 2)	144.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	4.04	4.78	7.42	6.84	4.91	9.09	5.31	4.85	8.26	6.53	13.06	7.83
Merged-chr4-134119929-1	chr4	134119829	134120029	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	8824.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	4.04	3.77	0.57	1.21	0.41	1.57	0.66	0.34	8.65	8.54	8.54	3.13
Merged-chr4-7314586-1	chr4	7314486	7314686	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-246102.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.81	2.26	1.14	5.63	2.45	2.82	3.99	4.79	1.18	3.01	1.0	2.82
Merged-chr1-118320883-1	chr1	118320783	118320983	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-960.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	4.44	2.52	1.71	3.22	5.73	7.84	3.32	2.94	5.51	9.54	13.06	3.13
Merged-chr13-31559276-1	chr13	31559176	31559376	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008239, exon 1 of 1)	exon (NM_008239, exon 1 of 1)	1106.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	4.04	4.53	9.13	6.44	0.82	5.96	6.31	4.79	4.72	2.01	3.52	4.07
Merged-chr8-22713227-1	chr8	22713127	22713327	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6644.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	3.63	1.26	0.0	5.63	9.0	5.64	3.32	4.51	4.13	1.51	8.04	3.76
Merged-chr11-97469114-1	chr11	97469014	97469214	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021493, intron 11 of 18)	intron (NM_021493, intron 11 of 18)	18954.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	5.65	3.02	9.13	2.01	8.18	5.64	2.33	5.27	11.41	1.51	6.03	5.64
Merged-chrX-102660867-1	chrX	102660767	102660967	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16621.0	NM_173021	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	2.83	4.02	5.13	8.85	2.45	6.59	4.65	5.61	6.1	4.02	8.04	10.02
Merged-chr9-60826870-1	chr9	60826770	60826970	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	32428.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.81	2.26	3.42	8.04	9.41	7.84	3.32	5.1	0.98	0.5	1.51	0.31
Merged-chr2-71812986-2	chr2	71812888	71813088	+	599.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	26049.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	4.85	3.27	10.27	12.07	10.23	3.76	9.63	5.92	8.26	5.02	5.02	2.51
Merged-chr10-99641999-3	chr10	99641905	99642105	+	599.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038018)	promoter-TSS (NR_038018)	-85.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	4.85	3.02	9.13	18.9	9.41	12.23	7.97	6.64	7.08	7.53	11.05	8.46
Merged-chr6-58772205-2	chr6	58772113	58772313	+	599.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59252.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	6.06	6.79	5.7	6.03	4.5	6.9	1.66	5.66	11.6	6.03	8.54	3.45
Merged-chr16-3233869-2	chr16	3233718	3233918	+	599.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-358580.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.42	5.28	3.42	4.83	3.27	3.76	4.65	6.62	3.74	5.02	3.52	2.82
Merged-chr2-129183985-2	chr2	129183890	129184090	+	599.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3317.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	7.27	5.53	5.7	3.22	10.23	3.45	6.64	4.32	13.77	8.03	5.53	3.13
Merged-chr9-122887662-1	chr9	122887562	122887762	+	599.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177505)	promoter-TSS (NM_001177505)	-809.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	2.02	4.28	0.0	3.22	3.68	0.63	0.0	2.64	6.88	3.01	9.55	6.58
Merged-chr16-45274758-1	chr16	45274658	45274858	+	599.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	50421.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.03	8.54	11.56	6.27
Merged-chr6-29533449-1	chr6	29533349	29533549	+	599.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252382, intron 2 of 8)	(GGA)n|Simple_repeat|Simple_repeat	4167.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	2.02	1.01	3.42	0.4	6.14	5.33	4.65	5.83	3.54	3.51	3.01	3.45
Merged-chr16-49755374-2	chr16	49755275	49755475	+	599.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028680, intron 6 of 10)	URR1A|DNA|hAT-Charlie	56081.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	3.63	2.52	0.0	4.02	7.36	5.33	5.65	5.75	4.52	5.52	14.57	4.07
Merged-chr2-109893858-2	chr2	109893762	109893962	+	599.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011699, intron 1 of 4)	intron (NM_011699, intron 1 of 4)	2984.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	3.23	6.54	7.99	7.24	7.77	4.39	5.31	7.26	7.87	6.03	2.01	0.31
Merged-chr5-137820935-2	chr5	137820830	137821030	+	599.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360023, intron 16 of 16)	Lx8b|LINE|L1	15348.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	10.5	3.27	3.42	4.02	10.23	10.03	7.97	5.38	10.82	20.59	8.04	2.19
Merged-chr15-78244104-2	chr15	78244010	78244210	+	599.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	-701.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	12.11	4.53	6.85	5.63	11.05	13.48	4.32	5.89	9.83	12.05	9.04	7.21
Merged-chr1-159305195-1	chr1	159305095	159305295	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011931, intron 11 of 19)	MTD|LTR|ERVL-MaLR	11422.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	2.02	1.26	1.14	4.02	7.36	4.7	4.32	6.42	2.56	1.51	6.03	3.76
Merged-chr19-26622930-1	chr19	26622830	26623030	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011416, intron 2 of 32)	intron (NM_011416, intron 2 of 32)	17770.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.23	1.26	3.42	3.22	7.36	2.51	5.65	5.33	1.97	6.03	3.01	0.63
Merged-chr9-90447136-2	chr9	90447051	90447251	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176382.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.25	6.79	3.42	2.82	1.23	7.21	4.65	4.37	9.44	7.03	9.04	2.51
Merged-chr3-21936936-2	chr3	21936801	21937001	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.85	1.01	9.13	5.63	5.32	7.21	3.99	4.01	4.72	10.54	10.55	2.51
Merged-chr13-30642262-2	chr13	30642173	30642373	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-17786.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	4.85	5.53	5.7	6.03	6.14	8.47	1.0	4.49	11.01	11.55	10.05	5.64
Merged-chr5-3382463-1	chr5	3382363	3382563	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	38570.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.63	4.02	6.28	5.63	4.91	10.35	4.32	6.08	7.47	9.54	3.52	5.64
Merged-chr11-110483379-2	chr11	110483298	110483498	+	599.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 2 of 11)	intron (NM_001356352, intron 2 of 11)	4058.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	12.11	6.29	4.56	4.02	4.09	5.64	0.33	3.39	7.28	12.05	6.53	9.08
Merged-chr12-103532973-2	chr12	103532827	103533027	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028980, intron 1 of 24)	intron (NM_028980, intron 1 of 24)	362.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	4.44	2.77	4.56	4.83	5.32	4.7	1.99	3.62	7.28	8.03	10.05	7.52
Merged-chr4-55098533-1	chr4	55098433	55098633	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	150588.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	1.62	4.78	3.99	4.02	2.86	6.59	3.65	5.44	0.2	0.0	0.5	0.31
Merged-chr11-61147384-1	chr11	61147284	61147484	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021349, intron 3 of 3)	CpG	6549.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	5.65	3.52	5.13	4.42	3.68	6.9	4.32	5.13	3.34	9.04	10.55	5.33
Merged-chr7-140063295-1	chr7	140063195	140063395	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14207.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	3.63	5.03	2.85	1.21	1.64	6.27	4.32	4.35	7.28	3.01	7.54	3.45
Merged-chr1-174175669-1	chr1	174175569	174175769	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011465, intron 2 of 51)	intron (NM_011465, intron 2 of 51)	2893.0	NM_011465	20739.0	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	5.65	4.28	1.14	3.22	2.86	6.9	4.32	4.57	3.74	1.0	10.05	3.13
Merged-chr6-54699215-1	chr6	54699115	54699315	+	599.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17591.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.59	7.67	8.03	5.02	10.34
Merged-chr4-136887153-2	chr4	136887033	136887233	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-956.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	5.65	2.01	4.56	0.0	0.0	2.82	7.64	4.46	5.51	8.54	8.04	4.07
Merged-chr9-41159167-1	chr9	41159067	41159267	+	599.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1105.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.81	5.79	3.99	2.41	4.5	2.82	1.99	5.24	9.83	8.54	3.52	5.95
Merged-chr1-52501564-1	chr1	52501464	52501664	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1116.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	1.62	4.53	1.14	4.02	3.68	3.76	5.31	7.09	6.69	2.01	6.53	4.39
Merged-chr13-99138952-1	chr13	99138852	99139052	+	599.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-45871.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	9.29	7.29	9.7	7.24	5.73	2.82	1.66	3.5	1.18	2.51	2.01	0.94
Merged-chr7-97751599-2	chr7	97751566	97751766	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-13419.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	1.62	3.02	3.99	9.25	0.41	2.51	6.64	2.33	5.7	3.01	3.52	4.39
Merged-chr11-97698814-3	chr11	97698708	97698908	+	599.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163307, intron 1 of 10)	intron (NM_001163307, intron 1 of 10)	576.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	7.27	7.04	6.85	4.02	3.27	6.59	4.98	3.17	2.36	9.04	3.52	7.21
Merged-chr8-56304313-2	chr8	56304216	56304416	+	599.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	URR1A|DNA|hAT-Charlie	9764.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.85	6.29	3.99	11.26	5.73	4.39	5.31	13.77	7.08	6.03	14.07	9.08
Merged-chr5-88572117-2	chr5	88572043	88572243	+	599.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	7103.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.67	5.53	6.85	5.23	6.14	5.33	4.98	5.38	5.9	5.52	6.03	4.39
Merged-chr16-50373921-1	chr16	50373821	50374021	+	599.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	58468.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	11.31	6.29	6.85	9.65	4.09	5.02	3.65	9.48	6.29	6.53	8.54	3.76
Merged-chr1-131043025-1	chr1	131042925	131043125	+	599.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23180.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	1.62	5.79	2.28	0.8	11.45	0.94	0.0	0.67	10.23	8.03	12.56	2.51
Merged-chr1-9541426-2	chr1	9541323	9541523	+	599.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3985.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	6.46	7.04	3.99	4.42	15.14	1.88	3.99	4.63	8.06	10.54	8.54	1.25
Merged-chr6-122826383-2	chr6	122826270	122826470	+	599.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	-5007.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	2.83	5.53	3.42	0.0	4.09	0.94	1.33	2.52	9.05	10.04	6.03	3.76
Merged-chr3-108204132-3	chr3	108204003	108204203	+	599.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175183, intron 10 of 11)	intron (NM_175183, intron 10 of 11)	-3269.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	5.25	8.55	3.42	10.86	4.5	8.47	4.32	3.76	5.51	11.05	7.03	6.58
Merged-chr10-95533110-2	chr10	95533009	95533209	+	599.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	17947.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	5.25	4.53	7.99	4.83	4.09	12.23	8.3	5.86	5.11	8.03	10.05	6.58
Merged-chr18-4257693-1	chr18	4257593	4257793	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91861.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	1.62	4.53	6.85	2.41	7.36	5.33	1.99	7.46	4.33	4.02	7.03	8.77
Merged-chr11-98952019-1	chr11	98951919	98952119	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-8452.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.44	2.52	2.28	4.02	9.82	4.39	5.65	4.99	6.49	8.03	7.54	8.46
Merged-chr6-88242694-1	chr6	88242594	88242794	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20426.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.0	4.78	5.13	4.02	4.5	5.02	4.32	4.96	3.15	2.51	7.54	3.13
Merged-chr14-117716539-1	chr14	117716439	117716639	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	L1_Mur2|LINE|L1	237308.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	3.23	3.27	5.7	5.63	1.64	0.63	0.66	1.26	8.26	5.02	29.14	8.77
Merged-chr2-118702950-2	chr2	118702837	118703037	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	1026.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	6.06	5.53	7.42	4.83	5.73	8.15	5.31	3.67	6.49	3.51	2.51	5.95
Merged-chr12-17783040-1	chr12	17782940	17783140	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	92231.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	8.48	3.02	4.56	0.8	6.55	3.14	3.65	6.7	7.28	3.51	8.54	6.89
Merged-chr7-120670725-1	chr7	120670625	120670825	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040137)	promoter-TSS (NM_001040137)	-382.0	NM_001040136	67983.0	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	2.83	2.77	1.71	3.62	9.82	5.02	2.99	2.36	11.8	6.03	11.05	1.88
Merged-chr7-141563242-1	chr7	141563142	141563342	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	1062.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	2.42	1.51	2.85	1.61	3.68	7.53	1.0	4.18	4.92	4.02	3.01	5.33
Merged-chr13-81781482-1	chr13	81781382	81781582	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1765.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	1.62	1.01	3.42	1.21	1.64	7.21	2.99	5.38	6.29	10.04	3.01	1.88
Merged-chr1-152770948-1	chr1	152770848	152771048	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026369, intron 2 of 3)	intron (NM_026369, intron 2 of 3)	4406.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	1.21	4.02	1.14	2.01	0.0	9.72	0.0	4.51	3.74	0.5	1.0	2.19
Merged-chr16-17474203-1	chr16	17474103	17474303	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007764, intron 2 of 2)	intron (NM_007764, intron 2 of 2)	-15474.0	NM_175178	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	1.21	0.5	0.0	1.21	2.45	4.7	3.32	5.89	2.16	1.51	3.01	3.76
Merged-chr15-100601947-1	chr15	100601847	100602047	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-1963.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.0	1.51	2.85	0.0	1.64	6.9	0.0	3.48	0.79	0.5	0.0	2.19
Merged-chr5-23615735-1	chr5	23615635	23615835	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	836.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	3.23	5.03	2.28	3.62	0.0	4.08	3.99	3.84	7.08	4.52	3.52	1.88
Merged-chr6-87733781-1	chr6	87733681	87733881	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	2912.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.04	5.03	2.85	4.02	5.73	2.51	4.32	6.7	1.57	1.0	2.01	2.51
Merged-chr11-97781945-1	chr11	97781845	97782045	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-179.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	7.67	9.31	10.84	7.24	11.86	10.03	10.96	4.04	7.87	10.04	10.55	12.53
Merged-chr12-117724150-1	chr12	117724050	117724250	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 19 of 27)	intron (NM_175930, intron 19 of 27)	-119711.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	8.48	3.02	6.28	1.61	5.73	4.39	1.99	2.94	9.24	5.02	8.54	5.64
Merged-chr15-102257681-1	chr15	102257581	102257781	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011244)	promoter-TSS (NM_011244)	-159.0	NM_011244	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	8.48	5.03	1.14	2.82	4.5	2.2	5.65	4.4	2.95	5.02	3.52	1.88
Merged-chr3-141492112-1	chr3	141492012	141492212	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	26548.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	3.23	3.77	8.56	4.83	6.14	4.08	3.99	5.27	9.24	1.51	9.04	3.76
Merged-chr18-31805293-1	chr18	31805193	31805393	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028866, intron 1 of 21)	intron (NM_028866, intron 1 of 21)	1236.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	4.04	5.79	1.14	2.41	3.68	4.39	2.66	3.9	6.29	3.51	6.03	5.01
Merged-chr19-10258601-1	chr19	10258501	10258701	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 9 of 19)	intron (NM_198114, intron 9 of 19)	-17853.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	8.48	2.01	7.42	1.61	7.36	4.39	4.32	4.18	10.62	5.02	5.02	5.33
Merged-chr12-30257800-1	chr12	30257700	30257900	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324521, intron 8 of 15)	intron (NM_001324521, intron 8 of 15)	115575.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	1.62	2.52	0.57	5.63	6.95	7.53	3.65	4.6	1.57	0.5	1.51	1.88
Merged-chr7-30285525-1	chr7	30285425	30285625	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-5104.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	3.63	0.75	0.0	0.0	3.27	1.57	5.31	4.37	0.79	1.0	5.02	3.45
Merged-chr18-82872379-1	chr18	82872279	82872479	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16482.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.46	0.75	0.57	2.01	5.73	3.76	3.65	7.68	6.69	2.51	9.55	0.94
Merged-chr2-168469309-1	chr2	168469209	168469409	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121056.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.23	6.29	6.85	6.84	2.86	4.39	2.99	5.41	0.39	4.02	0.5	1.25
Merged-chr12-38815083-1	chr12	38814983	38815183	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	31372.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.02	1.26	0.57	2.41	5.32	1.57	4.98	4.88	2.16	2.01	8.04	1.25
Merged-chr15-8577763-1	chr15	8577663	8577863	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133044.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	9.69	5.03	2.28	4.42	12.27	4.7	3.32	3.08	4.33	8.03	10.05	2.51
Merged-chr2-102744519-1	chr2	102744419	102744619	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2241.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	11.31	5.28	0.0	8.85	9.82	3.45	3.65	5.3	7.87	6.03	5.02	5.33
Merged-chr10-80121806-1	chr10	80121706	80121906	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301853, intron 1 of 8)	MTEb|LTR|ERVL-MaLR	6003.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.81	3.27	7.99	4.83	6.14	6.9	2.99	6.28	5.9	4.02	4.52	6.27
Merged-chr11-115477144-1	chr11	115477044	115477244	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177778, intron 2 of 2)	B1_Mur1|SINE|Alu	1477.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	7.67	8.05	5.13	10.46	12.68	3.76	1.33	5.58	5.7	7.03	12.06	5.33
Merged-chr11-70014990-1	chr11	70014890	70015090	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_017366, intron 2 of 19)	intron (NM_017366, intron 2 of 19)	438.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	7.67	7.04	1.14	3.22	2.05	3.14	2.99	3.7	8.46	4.02	2.51	4.7
Merged-chr7-141575738-1	chr7	141575638	141575838	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	13558.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	3.23	5.53	4.56	2.01	8.59	6.9	1.0	3.64	5.11	5.02	1.51	5.01
Merged-chr10-94464122-1	chr10	94464022	94464222	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MIRc|SINE|MIR	-50735.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.83	2.01	5.7	2.41	6.55	3.14	7.97	4.35	5.9	3.01	2.01	3.76
Merged-chr4-150855812-1	chr4	150855712	150855912	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	742.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	5.25	7.04	4.56	2.41	1.23	3.76	3.32	4.96	8.06	7.53	4.52	6.27
Merged-chr5-107522142-1	chr5	107522042	107522242	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-12569.0	NM_182745	76421.0	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	4.04	0.0	0.0	1.61	5.73	5.33	2.66	6.36	1.18	4.02	9.04	2.51
Merged-chr17-78836291-1	chr17	78836191	78836391	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	775.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	1.62	2.52	2.28	2.41	2.05	5.33	1.66	1.96	3.93	2.51	5.02	1.57
Merged-chr18-82538266-1	chr18	82538166	82538366	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-16197.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.44	5.28	1.71	7.24	3.27	7.21	0.0	5.55	1.97	4.02	1.0	4.07
Merged-chr3-57706245-1	chr3	57706145	57706345	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-13708.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	5.65	4.02	1.14	3.22	9.0	3.14	2.66	4.88	7.47	9.54	14.07	3.45
Merged-chr1-169532335-1	chr1	169532235	169532435	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-871.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	6.06	6.54	7.99	3.62	5.73	3.76	1.99	5.97	8.85	4.52	8.04	5.33
Merged-chr17-28163878-1	chr17	28163778	28163978	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004366, intron 10 of 21)	intron (NM_001004366, intron 10 of 21)	-13318.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	6.06	2.77	0.0	2.41	4.5	2.51	1.66	3.59	10.23	11.05	5.53	3.45
Merged-chr15-44623438-1	chr15	44623338	44623538	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019480, intron 1 of 6)	intron (NM_019480, intron 1 of 6)	3797.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	1.01	0.0	3.22	4.09	2.2	0.66	1.32	6.29	8.54	3.52	8.77
Merged-chr17-69106195-1	chr17	69106095	69106295	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	30518.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.63	3.52	5.7	1.21	9.82	3.76	2.33	5.58	7.47	6.03	5.02	5.95
Merged-chr19-10940561-1	chr19	10940461	10940661	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023731)	TTS (NM_023731)	3401.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	4.04	11.07	1.14	3.22	4.5	7.21	3.32	2.83	6.69	7.03	5.53	7.52
Merged-chr16-75983005-1	chr16	75982905	75983105	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-17779.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	3.63	4.02	2.85	1.61	7.36	3.14	8.97	4.93	10.62	4.02	5.02	2.51
Merged-chr9-91388971-1	chr9	91388871	91389071	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009576, exon 5 of 5)	3' UTR (NM_009576, exon 5 of 5)	19999.0	NM_009576	22774.0	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.0	0.0	2.28	0.0	2.86	1.88	5.65	4.32	0.98	0.0	0.0	0.0
Merged-chr7-28954979-1	chr7	28954879	28955079	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	7353.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.4	1.26	9.13	0.4	0.82	7.84	1.33	4.85	2.36	2.51	2.51	3.45
Merged-chr19-45205943-1	chr19	45205843	45206043	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29293.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	2.42	4.02	1.14	4.83	7.77	9.09	1.0	5.5	0.79	0.0	0.5	0.31
Merged-chr4-109394655-1	chr4	109394555	109394755	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11602.0	NR_131195	102635290.0	Mm.427859	NR_131195		Ttc39aos1	Gm12750|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	2.42	3.52	1.14	8.45	7.36	7.53	1.99	4.32	0.98	1.0	10.55	4.07
Merged-chr12-13562826-1	chr12	13562726	13562926	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	64820.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	4.44	3.52	3.99	3.22	6.14	5.64	2.99	6.62	6.1	1.0	12.56	1.88
Merged-chr16-23506032-1	chr16	23505932	23506132	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359083, intron 2 of 10)	intron (NM_001359083, intron 2 of 10)	14783.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	6.86	3.02	7.42	3.22	5.32	3.14	3.32	7.85	6.88	5.52	5.53	8.14
Merged-chr16-76416598-2	chr16	76416498	76416698	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-42771.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.65	1.01	4.56	4.02	3.68	2.51	1.33	4.07	12.19	5.52	10.05	6.27
Merged-chr4-128777038-1	chr4	128776938	128777138	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081098, intron 8 of 8)	intron (NM_001081098, intron 8 of 8)	17780.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	3.63	5.28	1.14	3.22	9.41	6.9	2.99	4.63	5.11	3.01	5.02	5.33
Merged-chr4-124657882-1	chr4	124657782	124657982	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	236.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	9.06	10.27	3.22	4.5	3.76	0.66	5.55	7.08	1.51	3.52	1.88
Merged-chr3-154330391-1	chr3	154330291	154330491	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040387)	promoter-TSS (NR_040387)	169.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	3.23	2.77	1.71	0.8	2.45	10.03	2.99	3.7	1.18	6.03	1.51	9.4
Merged-chrX-13844812-1	chrX	13844712	13844912	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 4 of 4)	intron (NR_037311, intron 4 of 4)	1744.0	NM_001284505	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	0.0	2.01	0.0	3.22	2.45	4.39	3.99	4.09	3.34	6.03	4.02	1.25
Merged-chr6-47587264-1	chr6	47587164	47587364	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007971, intron 1 of 19)	intron (NM_007971, intron 1 of 19)	7766.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.81	0.25	0.0	0.0	0.41	0.0	1.0	0.62	12.19	6.03	10.05	4.7
Merged-chr15-37941625-1	chr15	37941525	37941725	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357023, intron 5 of 8)	intron (NM_001357023, intron 5 of 8)	19231.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.4	2.01	1.14	7.24	2.45	3.76	4.98	5.58	3.34	3.51	3.01	2.51
Merged-chr7-75667208-1	chr7	75667108	75667308	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-181130.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	1.62	7.04	2.85	2.41	7.77	7.53	7.64	4.37	5.51	4.52	4.02	5.33
Merged-chr8-22167206-1	chr8	22167106	22167306	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-771.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0.0	0.5	1.14	0.0	4.91	0.94	4.65	4.93	2.95	0.5	0.5	2.51
Merged-chr19-5085611-1	chr19	5085511	5085711	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001001885)	promoter-TSS (NM_001001885)	-134.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	7.27	6.29	1.14	2.01	6.14	4.7	2.99	6.45	8.46	2.51	7.03	4.39
Merged-chr1-64599284-1	chr1	64599184	64599384	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	17884.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	2.42	2.01	1.71	1.21	3.68	5.02	1.99	4.96	3.54	1.51	2.01	2.51
Merged-chr7-44860751-1	chr7	44860651	44860851	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290764, intron 8 of 16)	intron (NM_001290764, intron 8 of 16)	3348.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	4.85	2.52	1.14	3.62	5.32	6.9	3.65	2.05	9.24	6.53	10.55	5.64
Merged-chr14-25587024-1	chr14	25586924	25587124	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	220.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.4	3.02	1.71	3.22	4.5	8.15	1.66	4.32	6.1	2.51	14.57	5.64
Merged-chr1-40064702-2	chr1	40064609	40064809	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20005.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	6.86	3.27	4.56	12.47	2.45	7.21	0.66	5.66	3.93	9.54	8.54	0.31
Merged-chr11-11548031-1	chr11	11547931	11548131	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	58765.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.83	2.01	0.57	1.61	0.0	5.33	0.0	3.81	4.72	8.54	5.02	0.94
Merged-chr17-72920253-1	chr17	72920153	72920353	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	1948.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.75	1.71	0.4	4.91	2.2	0.0	6.0	0.59	0.0	1.0	0.63
Merged-chr14-75184530-1	chr14	75184430	75184630	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	48105.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	2.02	4.02	6.85	2.41	5.73	3.14	1.99	6.42	9.05	5.52	4.02	4.39
Merged-chr10-68279079-1	chr10	68278979	68279179	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-353.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.81	3.77	0.0	4.83	2.86	7.84	4.32	3.67	3.54	4.52	8.04	2.51
Merged-chr13-81658874-1	chr13	81658774	81658974	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030257, intron 1 of 2)	intron (NM_030257, intron 1 of 2)	1068.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	8.48	3.27	6.85	6.44	6.55	7.21	6.98	3.53	5.9	11.55	4.52	3.76
Merged-chr11-80158970-1	chr11	80158870	80159070	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	4808.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	2.42	5.53	1.14	3.62	6.14	5.33	0.33	4.91	6.49	5.52	2.01	4.39
Merged-chr11-79993777-1	chr11	79993677	79993877	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199196, intron 1 of 15)	CpG	671.0	NM_199196	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	0.81	4.53	1.71	2.82	7.77	8.15	4.98	2.05	6.49	3.01	3.01	2.82
Merged-chr13-65127593-2	chr13	65127478	65127678	+	598.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-14596.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	6.46	6.29	9.13	2.41	7.77	4.39	5.65	5.19	2.75	3.51	4.52	1.88
Merged-chr1-80671908-3	chr1	80671762	80671962	+	598.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-6510.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.65	6.79	2.28	8.04	3.27	4.08	3.99	7.68	9.64	3.51	4.52	5.95
Merged-chr4-116824726-3	chr4	116824597	116824797	+	598.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3189.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	5.25	5.28	6.85	3.22	7.77	7.53	2.66	4.09	8.26	6.03	4.52	2.51
Merged-chr9-114925743-2	chr9	114925636	114925836	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	8251.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.83	3.27	3.42	2.82	5.73	0.31	2.99	9.5	9.64	8.03	11.05	12.53
Merged-chr1-65185758-2	chr1	65185657	65185857	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	722.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	3.63	3.27	1.14	0.8	2.86	9.41	6.64	5.24	7.47	9.04	7.03	5.95
Merged-chr8-61928977-2	chr8	61928866	61929066	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293783, intron 1 of 37)	intron (NM_001293783, intron 1 of 37)	879.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	1.21	5.03	3.99	4.02	1.64	2.82	4.65	4.63	1.77	4.02	4.52	6.89
Merged-chr17-70986985-2	chr17	70986894	70987094	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3522.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	11.31	6.29	5.13	0.8	11.05	5.33	5.98	5.1	9.64	5.52	7.54	5.95
Merged-chr17-31093579-1	chr17	31093479	31093679	+	598.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 3 of 14)	intron (NM_009593, intron 3 of 14)	35885.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.23	1.01	3.42	4.42	9.0	9.41	7.31	5.61	4.92	5.02	7.03	1.57
Merged-chr5-110101277-3	chr5	110101193	110101393	+	598.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281812, intron 2 of 6)	intron (NM_001281812, intron 2 of 6)	734.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	9.29	2.01	6.85	10.86	5.73	7.21	7.64	3.45	10.23	10.54	9.04	7.21
Merged-chr11-116406307-1	chr11	116406207	116406407	+	598.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 1 of 18)	L1MB7|LINE|L1	6725.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.81	1.51	10.27	0.0	3.27	3.14	1.33	1.09	10.82	12.05	13.57	9.08
Merged-chr2-159950382-2	chr2	159950282	159950482	+	598.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040498, intron 1 of 6)	intron (NR_040498, intron 1 of 6)	3041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.04	2.52	6.28	4.83	13.5	9.09	4.65	5.55	8.65	8.54	11.56	7.52
Merged-chr13-23620244-2	chr13	23620193	23620393	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	801.0	NM_001177653	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.4	2.26	7.42	12.87	5.32	4.08	1.99	5.21	6.1	4.02	15.07	4.07
Merged-chr8-106507901-1	chr8	106507801	106508001	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2951.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	1.21	1.51	3.42	1.61	6.14	2.82	5.98	3.62	5.7	1.0	5.53	1.88
Merged-chr5-148494785-2	chr5	148494691	148494891	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56882.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.23	4.28	5.13	4.83	4.91	4.39	4.98	2.97	11.21	12.55	10.55	8.46
Merged-chr10-54059309-2	chr10	54059194	54059394	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	16502.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	6.46	6.29	3.42	2.82	4.5	5.64	5.98	4.88	10.23	8.03	3.01	3.45
Merged-chr15-64091985-1	chr15	64091885	64092085	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-31537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.4	2.77	19.4	4.83	6.14	0.31	3.99	3.14	2.75	1.0	4.02	2.51
Merged-chr1-177248836-1	chr1	177248736	177248936	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011785)	promoter-TSS (NM_011785)	-69.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	9.69	2.52	1.14	3.62	4.09	8.47	6.98	5.27	10.23	5.02	1.0	4.39
Merged-chr10-127615900-1	chr10	127615800	127616000	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5248.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.42	1.01	1.71	0.8	2.05	6.59	2.66	4.12	1.38	2.51	1.51	1.57
Merged-chr7-99139419-2	chr7	99139317	99139517	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1727.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.86	7.8	2.28	4.02	8.18	5.33	2.99	4.15	7.28	3.01	6.03	4.07
Merged-chr2-70824705-1	chr2	70824605	70824805	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172664, intron 1 of 19)	intron (NM_172664, intron 1 of 19)	775.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	10.5	3.27	5.13	2.41	4.91	5.33	4.98	4.91	7.47	5.52	3.01	7.52
Merged-chr16-21837815-2	chr16	21837726	21837926	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43479.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	6.06	3.27	4.56	4.42	7.36	5.96	4.65	6.25	12.98	6.53	7.54	7.52
Merged-chr11-48808378-2	chr11	48808290	48808490	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145377, intron 4 of 5)	intron (NM_145377, intron 4 of 5)	5251.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	6.46	6.04	7.42	3.22	6.14	0.63	1.33	3.39	10.42	9.54	8.04	2.19
Merged-chr13-112509712-1	chr13	112509612	112509812	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45642.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.44	4.28	4.56	2.82	6.14	3.45	7.31	3.9	5.51	8.54	9.04	7.52
Merged-chr6-38640749-2	chr6	38640649	38640849	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3510.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	5.25	10.06	4.56	8.85	2.86	5.64	8.64	4.43	7.87	10.04	7.03	1.57
Merged-chr14-62222894-2	chr14	62222795	62222995	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	70084.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	1.62	0.0	2.28	4.02	0.0	3.45	4.65	4.4	8.26	0.0	10.55	4.7
Merged-chr17-35265811-2	chr17	35265733	35265933	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010380, exon 4 of 8)	exon (NM_010380, exon 4 of 8)	2710.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	6.46	10.56	2.85	6.84	11.05	7.21	5.31	0.9	3.74	7.53	3.52	3.13
Merged-chr3-97294855-2	chr3	97294770	97294970	+	598.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67506.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	7.27	7.04	7.42	4.02	5.32	4.7	5.31	3.67	9.64	10.54	13.57	3.45
Merged-chr16-57543489-1	chr16	57543389	57543589	+	598.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-5753.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.85	1.76	7.42	2.41	6.55	8.15	9.63	4.07	8.65	5.52	5.02	2.51
Merged-chr13-97523944-3	chr13	97523841	97524041	+	598.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36059.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.04	9.06	2.28	9.65	4.09	6.27	8.3	5.47	6.88	15.06	10.55	6.89
Merged-chr18-67286233-1	chr18	67286133	67286333	+	598.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2990.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	2.42	3.02	4.56	2.82	10.64	3.14	3.65	4.37	8.06	11.05	11.56	9.08
Merged-chr4-62353655-1	chr4	62353555	62353755	+	598.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	6941.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	2.42	3.02	7.99	1.61	4.09	11.92	7.31	5.69	5.11	11.55	3.52	7.52
Merged-chr11-94388863-1	chr11	94388763	94388963	+	598.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4113.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.63	0.75	1.71	3.22	10.23	4.08	4.32	4.63	2.75	3.01	4.52	2.19
Merged-chr1-155218253-2	chr1	155218131	155218331	+	598.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59528.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	1.62	6.29	7.42	4.02	4.91	2.2	4.98	4.21	3.93	3.01	5.02	6.89
Merged-chr4-132624412-2	chr4	132624312	132624512	+	598.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-14634.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.81	2.52	5.7	2.41	4.91	6.27	4.98	3.73	8.46	16.57	13.06	1.25
Merged-chr18-68905350-1	chr18	68905250	68905450	+	598.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	46178.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.81	2.52	3.42	6.84	8.18	7.84	5.98	4.07	0.39	2.01	0.0	0.31
Merged-chr12-85601949-2	chr12	85601813	85602013	+	598.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1895.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.65	5.53	5.7	1.61	5.73	10.03	8.3	2.27	5.51	8.54	5.02	7.21
Merged-chr9-52047264-2	chr9	52047169	52047369	+	598.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001104617)	promoter-TSS (NM_001104617)	119.0	NM_001104616	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	6.06	5.53	2.85	7.24	4.5	4.39	3.65	7.43	3.15	4.52	3.01	7.52
Merged-chr1-86018411-3	chr1	86018310	86018510	+	598.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3532.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	8.48	11.32	15.4	6.44	13.09	7.53	8.97	3.81	8.26	8.54	6.53	10.65
Merged-chr13-56633854-1	chr13	56633754	56633954	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24268.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.85	6.04	6.28	6.44	9.82	5.33	6.64	5.38	5.31	2.01	4.52	4.7
Merged-chr9-25571038-1	chr9	25570938	25571138	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89441.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.4	1.51	3.42	2.01	2.86	1.88	3.99	2.41	7.08	4.52	9.04	7.21
Merged-chr3-83881282-1	chr3	83881182	83881382	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39674.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.81	1.01	3.42	1.21	4.09	5.64	2.66	4.18	3.74	2.51	3.01	0.63
Merged-chr9-21014433-1	chr9	21014333	21014533	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1507.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	3.63	6.54	11.41	0.0	3.68	3.45	4.32	1.07	2.56	9.04	3.52	1.88
Merged-chr7-109218346-1	chr7	109218246	109218446	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43139.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.04	0.75	7.42	0.0	9.41	5.96	1.99	6.11	4.72	1.0	3.52	6.89
Merged-chr3-51629212-1	chr3	51629112	51629312	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31967.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.44	3.52	0.0	0.8	6.55	5.64	5.31	6.31	1.18	4.52	3.52	2.51
Merged-chr15-30512973-1	chr15	30512873	30513073	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	340380.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	2.42	2.77	0.0	3.62	7.36	0.63	1.0	3.79	2.56	3.51	3.52	2.51
Merged-chr17-13591028-1	chr17	13590928	13591128	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36934.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	2.01	0.0	4.02	0.0	0.0	0.66	1.07	7.47	7.53	5.53	7.21
Merged-chr6-28822343-1	chr6	28822243	28822443	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	9404.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.85	5.03	3.42	2.41	1.64	2.51	4.98	5.21	1.57	2.51	5.53	2.82
Merged-chr19-6950917-1	chr19	6950817	6951017	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285453, intron 3 of 3)	intron (NM_001285453, intron 3 of 3)	8355.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	2.83	3.02	4.56	6.03	3.68	6.59	8.3	1.85	9.64	5.02	4.52	8.14
Merged-chr11-70221733-1	chr11	70221633	70221833	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-739.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	4.85	4.02	1.14	0.8	2.05	1.25	3.32	4.37	2.95	2.51	1.51	2.82
Merged-chrX-169304136-1	chrX	169304036	169304236	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_109847, exon 15 of 15)	non-coding (NR_109847, exon 15 of 15)	16236.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	2.02	3.02	10.27	6.44	3.68	4.39	6.64	5.16	3.34	1.51	14.57	5.01
Merged-chr5-129016629-1	chr5	129016529	129016729	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3527.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	1.62	6.04	6.28	2.82	5.73	4.39	3.32	5.1	0.98	1.51	3.01	4.39
Merged-chr3-88467286-3	chr3	88467182	88467382	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-6100.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	5.25	9.31	6.28	8.45	18.0	8.15	6.31	5.83	11.21	8.54	13.57	5.64
Merged-chrX-71493513-1	chrX	71493413	71493613	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138309)	promoter-TSS (NM_138309)	-664.0	NM_001199349	171486.0	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	2.42	6.54	3.42	2.01	1.23	6.9	6.31	3.53	4.33	0.5	7.03	3.45
Merged-chr1-182108693-1	chr1	182108593	182108793	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16044.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.0	1.26	2.85	3.62	5.32	6.9	1.99	4.12	3.74	1.51	4.52	2.82
Merged-chr7-28867000-1	chr7	28866900	28867100	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008496)	TTS (NM_008496)	2614.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.4	3.77	0.0	5.63	0.82	6.9	4.65	6.03	2.16	3.51	5.02	0.31
Merged-chr7-105412042-1	chr7	105411942	105412142	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7474.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	4.85	6.54	2.28	3.22	5.73	7.21	3.65	7.12	12.78	7.53	11.56	4.07
Merged-chr17-35826621-1	chr17	35826521	35826721	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	3264.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	7.67	7.55	0.0	0.0	5.32	3.45	2.99	0.98	5.31	1.51	3.01	0.31
Merged-chrX-142380151-1	chrX	142380051	142380251	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	10384.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	3.23	4.02	2.28	6.03	9.41	2.51	4.98	3.64	5.51	2.01	7.03	3.13
Merged-chr1-37322945-2	chr1	37322865	37323065	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	MIRc|SINE|MIR	23127.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.81	6.79	7.42	8.45	4.91	6.27	6.31	6.98	0.98	1.51	5.02	5.95
Merged-chr11-53773660-1	chr11	53773560	53773760	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001159396, exon 4 of 10)	exon (NM_001159396, exon 4 of 10)	3187.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.46	7.04	5.13	1.61	6.14	4.7	0.66	1.18	4.92	4.52	0.5	3.45
Merged-chr2-129582261-1	chr2	129582161	129582361	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10578.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.81	2.01	0.0	0.0	5.73	6.9	7.64	2.83	0.98	0.0	0.0	1.88
Merged-chr13-60625967-1	chr13	60625867	60626067	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	23756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.62	1.01	0.0	1.61	0.41	3.76	7.64	5.07	2.16	1.51	1.51	4.07
Merged-chr3-95906323-1	chr3	95906223	95906423	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1638.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	6.86	2.77	1.14	0.8	4.91	7.21	1.33	4.85	7.28	6.03	5.02	2.82
Merged-chr12-3926301-1	chr12	3926201	3926401	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28644.0	NM_001278581	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	2.83	4.53	0.0	0.4	4.5	4.08	5.31	3.5	6.29	3.01	8.54	3.76
Merged-chr9-123853507-1	chr9	123853407	123853607	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1608.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	10.09	1.26	2.85	1.21	2.86	1.25	0.66	2.02	9.05	6.53	4.52	8.14
Merged-chr1-91755295-1	chr1	91755195	91755395	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46166.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	5.25	1.76	1.14	0.0	5.73	4.08	3.65	6.42	1.97	1.0	2.51	0.0
Merged-chr13-103955675-1	chr13	103955575	103955775	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35089.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	1.01	2.28	2.41	3.27	0.63	5.65	1.68	0.59	0.0	1.51	1.57
Merged-chr16-42172723-1	chr16	42172623	42172823	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	130746.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	3.63	2.01	2.28	8.04	6.14	1.57	3.32	4.6	0.98	2.51	0.0	1.88
Merged-chr11-68656575-1	chr11	68656475	68656675	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35340.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	1.21	1.51	1.14	5.23	1.64	5.96	0.33	3.48	4.92	4.02	3.52	5.33
Merged-chr17-34971012-1	chr17	34970912	34971112	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	1144.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	4.44	16.1	0.0	3.62	10.64	21.32	1.66	2.5	9.44	8.03	2.51	3.13
Merged-chr9-108431856-1	chr9	108431756	108431956	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3374.0	NM_001135198	434438.0	Mm.425598	NM_001135198	ENSMUSG00000047220	Ccdc36	-	coiled-coil domain containing 36	protein-coding	0.81	1.26	3.99	0.8	8.18	2.2	2.99	6.14	8.26	3.01	5.53	5.33
Merged-chr6-39264892-1	chr6	39264792	39264992	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	3.23	1.76	4.56	0.0	2.05	4.39	5.65	5.52	3.74	4.52	3.01	3.45
Merged-chr17-86493283-1	chr17	86493183	86493383	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011104, exon 9 of 15)	exon (NM_011104, exon 9 of 15)	-206105.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.63	3.02	4.56	10.86	6.95	5.64	2.66	6.11	0.59	0.0	0.5	0.31
Merged-chr10-12814056-1	chr10	12813956	12814156	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	47679.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.85	0.0	5.7	6.03	4.91	0.94	6.64	5.55	3.54	4.52	4.02	3.45
Merged-chrX-71050810-3	chrX	71050691	71050891	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	535.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	6.46	6.54	2.28	6.84	9.0	3.14	6.64	4.51	4.72	14.06	7.03	2.82
Merged-chr15-102109328-1	chr15	102109228	102109428	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153533, exon 12 of 29)	exon (NM_153533, exon 12 of 29)	6394.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	2.83	4.28	2.28	5.23	7.36	3.76	2.99	5.61	7.87	4.02	10.55	5.64
Merged-chr11-115270711-1	chr11	115270611	115270811	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007997, intron 6 of 11)	intron (NM_007997, intron 6 of 11)	-3468.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	6.06	5.03	1.14	3.62	4.5	10.35	2.33	4.15	11.8	5.02	7.03	3.13
Merged-chr2-32441663-1	chr2	32441563	32441763	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8794.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	4.44	3.77	0.57	0.0	4.09	10.98	1.99	2.27	8.65	16.07	13.06	3.76
Merged-chr3-135281144-1	chr3	135281044	135281244	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001172055)	promoter-TSS (NM_001172055)	-77.0	NM_001172055	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	3.63	4.53	5.13	1.61	5.73	4.39	2.66	5.3	7.08	5.02	16.08	4.39
Merged-chr4-101146320-2	chr4	101146206	101146406	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	77268.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.85	4.78	11.98	4.42	1.64	5.96	2.66	5.3	12.59	4.52	13.57	4.39
Merged-chr8-122333334-1	chr8	122333234	122333434	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009569, intron 5 of 9)	intron (NM_009569, intron 5 of 9)	29494.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	4.44	5.28	3.99	4.02	7.77	9.09	1.99	5.02	6.69	9.04	9.55	5.64
Merged-chr8-71948861-1	chr8	71948761	71948961	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2205.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	3.63	4.02	2.85	7.24	4.91	0.94	3.32	4.85	9.83	10.04	9.55	4.07
Merged-chr7-131553995-1	chr7	131553895	131554095	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145998)	promoter-TSS (NM_145998)	-67.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	6.86	5.28	5.7	8.85	9.0	9.09	7.31	5.07	10.62	5.02	9.04	3.13
Merged-chr1-43935395-1	chr1	43935295	43935495	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	1401.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	3.23	3.02	4.56	8.85	3.68	3.76	4.65	4.79	6.69	4.52	6.03	5.64
Merged-chr3-109476684-1	chr3	109476584	109476784	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-97323.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.4	1.01	0.57	0.8	3.27	5.64	1.33	5.1	0.39	0.5	3.01	0.94
Merged-chr10-14034217-1	chr10	14034117	14034317	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	67838.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.42	0.0	2.85	2.82	1.64	5.02	4.65	6.79	2.95	4.02	9.04	4.7
Merged-chr5-92438342-1	chr5	92438242	92438442	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3143.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	3.23	5.53	4.56	4.83	4.5	3.76	5.98	1.32	3.74	12.05	3.01	2.51
Merged-chr13-99317595-1	chr13	99317495	99317695	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27083.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.23	2.26	1.14	4.42	0.0	9.41	2.66	4.88	2.75	1.0	4.02	1.57
Merged-chr17-57462103-1	chr17	57462003	57462203	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 18 of 22)	MTC|LTR|ERVL-MaLR	83211.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	1.62	4.78	3.42	0.8	0.82	6.9	2.33	1.07	4.13	3.51	5.53	5.33
Merged-chr1-38012752-1	chr1	38012652	38012852	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	L1MD2|LINE|L1	14742.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.86	5.79	7.99	6.84	6.55	6.59	2.33	2.69	8.46	6.53	6.53	6.58
Merged-chr6-113078153-1	chr6	113078053	113078253	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	514.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	2.02	3.27	7.42	6.44	5.73	5.33	4.65	3.48	6.88	3.51	4.52	7.52
Merged-chr16-35752054-2	chr16	35751954	35752154	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	RLTR13D|LTR|ERVK	17302.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.23	4.53	1.14	4.02	6.95	4.08	5.65	6.17	5.31	10.54	9.55	7.52
Merged-chr4-137764181-1	chr4	137764081	137764281	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007431, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	2294.0	NM_001287172	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.81	4.02	8.56	2.01	3.27	0.0	0.66	1.26	11.01	9.04	5.02	3.13
Merged-chr17-94835310-1	chr17	94835210	94835410	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-511.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	6.06	5.28	4.56	7.24	12.68	8.78	6.64	7.4	10.62	11.55	6.53	5.64
Merged-chr6-47739894-1	chr6	47739794	47739994	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	4.5SRNA|scRNA|scRNA	4337.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.88	7.53	7.54	5.01
Merged-chr13-46979700-1	chr13	46979600	46979800	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	35150.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	10.9	2.01	4.56	8.45	4.91	10.35	0.0	3.08	7.28	0.5	2.51	5.95
Merged-chr2-78037728-1	chr2	78037628	78037828	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13449.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.81	2.01	2.28	2.41	3.27	6.9	3.65	6.0	9.05	0.5	9.55	1.57
Merged-chr14-15205706-1	chr14	15205606	15205806	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-231917.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	0.81	2.77	0.0	0.8	0.82	1.25	0.0	0.11	5.11	9.54	5.53	5.33
Merged-chr9-51102090-1	chr9	51101990	51102190	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177702)	promoter-TSS (NM_177702)	-12.0	NM_177702	235345.0	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	2.02	7.29	6.85	4.42	1.23	3.76	1.66	1.37	4.52	2.01	2.01	0.63
Merged-chrX-129766350-1	chrX	129766250	129766450	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	ORR1D2|LTR|ERVL-MaLR	16608.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	8.08	7.04	4.56	6.44	7.36	13.8	6.64	3.42	14.95	5.52	6.03	6.27
Merged-chr5-129965896-1	chr5	129965796	129965996	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	RSINE1|SINE|B4	23787.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	1.21	3.77	1.14	1.61	1.64	2.2	4.32	4.96	0.39	2.01	4.52	3.45
Merged-chrX-23365700-1	chrX	23365600	23365800	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026167)	promoter-TSS (NM_026167)	-618.0	NM_026167	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	2.42	3.27	7.42	9.65	6.55	2.51	3.32	5.24	4.52	4.02	1.51	4.07
Merged-chr6-115803754-1	chr6	115803654	115803854	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025958, exon 15 of 15)	exon (NM_025958, exon 15 of 15)	4349.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	4.04	6.79	4.56	6.03	3.68	5.96	5.31	4.46	6.1	2.51	11.05	5.64
Merged-chr18-46595900-1	chr18	46595800	46596000	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1635.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	2.42	2.01	0.0	3.62	6.55	2.2	1.99	5.64	2.95	1.0	4.52	2.19
Merged-chr18-36511838-1	chr18	36511738	36511938	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3967.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	9.69	4.53	6.85	7.24	6.55	7.53	8.3	5.07	10.62	10.54	8.54	4.7
Merged-chr11-54257203-2	chr11	54257090	54257290	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7291.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	3.23	8.8	6.85	8.85	7.77	9.09	1.99	4.68	7.28	5.52	7.03	5.33
Merged-chr1-77824000-1	chr1	77823900	77824100	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-308912.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.42	1.76	3.42	7.24	2.05	2.2	1.66	5.1	2.95	5.02	5.02	4.07
Merged-chr14-104028834-1	chr14	104028734	104028934	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1692.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.81	0.0	3.42	3.62	0.41	3.45	4.32	3.76	1.18	1.0	4.02	0.31
Merged-chr6-114842050-2	chr6	114841947	114842147	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79774.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.06	9.56	2.28	3.22	9.41	10.35	3.65	1.93	7.87	4.02	3.01	7.83
Merged-chr5-24470821-2	chr5	24470738	24470938	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	18661.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	4.85	4.02	8.56	1.61	3.68	5.02	8.3	4.21	10.62	10.04	11.05	2.19
Merged-chr7-106810256-1	chr7	106810156	106810356	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3796.0	NM_146600	258593.0	Mm.377583	NM_146600	ENSMUSG00000094493	Olfr700	MOR283-4	olfactory receptor 700	protein-coding	3.23	3.27	3.42	12.47	3.27	0.31	4.98	5.33	2.36	3.51	9.04	5.01
Merged-chr12-84276418-1	chr12	84276318	84276518	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8878.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	8.48	5.28	4.56	6.03	3.27	3.45	3.99	3.03	9.44	4.52	6.03	10.96
Merged-chr1-128614672-1	chr1	128614572	128614772	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22373.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	8.88	5.28	1.71	9.65	10.23	5.64	9.97	13.37	7.47	5.02	9.04	9.4
Merged-chr9-107278737-1	chr9	107278637	107278837	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	10659.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	1.21	3.77	4.56	0.0	0.0	0.0	0.0	0.34	6.29	8.03	7.54	3.76
Merged-chr5-88630194-1	chr5	88630094	88630294	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45386.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	2.42	2.52	0.57	2.82	8.18	4.08	1.99	4.12	1.97	4.02	3.52	4.39
Merged-chr6-56894492-1	chr6	56894392	56894592	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	7394.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	3.63	0.75	1.14	0.0	4.09	6.59	2.66	4.32	1.57	1.51	7.54	1.25
Merged-chr11-17006863-3	chr11	17006752	17006952	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	1866.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	5.65	7.04	4.56	6.84	4.91	7.84	3.65	3.34	9.44	10.54	7.03	8.14
Merged-chr9-41028668-2	chr9	41028556	41028756	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 8 of 13)	intron (NM_176860, intron 8 of 13)	-24028.0	NM_001281954	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	3.23	2.01	11.41	3.22	2.86	9.41	1.33	4.49	12.0	10.54	3.01	3.76
Merged-chr19-23057893-1	chr19	23057793	23057993	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83333.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.85	4.02	0.57	3.22	8.59	6.59	4.98	5.02	9.64	17.07	6.03	2.82
Merged-chr9-63757427-1	chr9	63757327	63757527	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	CpG	567.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.06	4.28	1.14	0.8	1.64	5.64	1.33	5.52	3.74	3.51	4.02	7.52
Merged-chr5-149015989-1	chr5	149015889	149016089	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9027.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	4.85	7.04	6.85	4.83	5.32	7.21	6.64	4.51	7.87	9.04	8.54	3.45
Merged-chrX-101329932-1	chrX	101329832	101330032	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30753.0	NM_172932	245537.0	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3|NLG3	neuroligin 3	protein-coding	5.25	3.02	7.42	6.84	4.5	5.64	2.99	4.54	5.7	3.01	5.02	3.45
Merged-chr13-110978916-1	chr13	110978816	110979016	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75070.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	3.23	3.02	3.42	4.02	2.05	4.08	4.32	5.41	6.1	4.52	10.05	7.21
Merged-chr13-58148619-1	chr13	58148519	58148719	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1670.0	NR_126543	67339.0	Mm.121929	NR_126543	ENSMUSG00000097717	1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	4.44	4.78	5.13	3.22	2.05	10.03	2.66	3.62	4.33	9.04	5.02	4.7
Merged-chr10-127606680-1	chr10	127606580	127606780	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 4 of 88)	B3|SINE|B2	14468.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.42	2.77	0.0	2.41	7.36	1.57	4.65	4.26	4.52	2.51	4.02	1.88
Merged-chr7-58398405-1	chr7	58398305	58398505	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-259797.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	3.02	0.0	0.8	0.41	1.57	4.98	4.46	0.79	2.01	0.5	2.82
Merged-chr2-22866078-1	chr2	22865978	22866178	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-29444.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.23	0.75	8.56	3.22	5.73	3.76	1.0	7.09	3.15	1.0	4.52	2.82
Merged-chr13-13784228-1	chr13	13784128	13784328	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010317)	promoter-TSS (NM_010317)	-79.0	NM_010317	14706.0	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	3.23	3.27	0.57	2.41	2.86	3.76	0.66	1.04	2.56	2.01	3.52	0.31
Merged-chr15-81132815-3	chr15	81132717	81132917	+	597.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-27770.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.85	6.79	11.41	11.26	4.91	1.57	5.65	5.19	10.62	9.54	7.54	16.29
Merged-chr7-12010716-2	chr7	12010632	12010832	+	597.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30567.0	NM_001166731	628946.0	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	8.48	5.79	17.11	3.62	8.59	5.96	9.3	4.43	4.92	6.03	7.54	17.86
Merged-chr4-135954424-2	chr4	135954290	135954490	+	597.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357530, intron 5 of 9)	B3|SINE|B2	6984.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	6.06	7.04	6.85	4.83	6.55	5.02	1.66	2.55	6.29	3.51	8.54	5.64
Merged-chr9-57433917-3	chr9	57433815	57434015	+	597.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	5821.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	8.08	10.31	1.14	6.44	3.68	5.64	6.64	3.45	7.28	7.53	8.04	8.14
Merged-chr1-85109489-1	chr1	85109389	85109589	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_213615, exon 1 of 7)	5' UTR (NM_213615, exon 1 of 7)	364.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.63	7.29	2.28	2.41	7.36	8.78	2.99	5.55	1.77	4.02	2.01	0.63
Merged-chr11-20848502-1	chr11	20848402	20848602	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17394.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	2.77	9.13	3.22	5.32	2.2	9.3	4.09	4.72	3.01	7.03	3.76
Merged-chr14-33247328-1	chr14	33247228	33247428	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30505.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.65	1.51	3.42	6.44	7.77	5.96	4.65	5.3	2.95	5.52	8.04	5.95
Merged-chr13-64922664-1	chr13	64922564	64922764	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030047, exon 3 of 3)	exon (NM_030047, exon 3 of 3)	5258.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	3.63	2.26	5.7	5.63	7.77	2.51	8.3	4.29	0.79	0.0	0.0	0.0
Merged-chr6-126910498-1	chr6	126910398	126910598	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	11341.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	1.21	4.78	7.42	5.63	6.14	4.08	7.64	5.44	1.97	4.02	3.01	4.39
Merged-chr16-32978661-2	chr16	32978564	32978764	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081255, intron 8 of 20)	intron (NM_001081255, intron 8 of 20)	64564.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	8.08	7.8	2.28	7.64	4.09	1.88	5.65	4.29	8.85	1.0	1.51	3.13
Merged-chr1-92911789-1	chr1	92911689	92911889	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	964.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	2.83	4.28	4.56	4.83	2.05	5.33	4.65	4.88	4.52	2.01	5.53	4.7
Merged-chr10-80700935-2	chr10	80700834	80701034	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	886.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	7.27	4.02	0.57	1.21	11.45	2.51	4.32	5.64	11.21	5.52	4.02	6.58
Merged-chrX-73655774-2	chrX	73655683	73655883	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001199351)	TTS (NM_001199351)	4071.0	NM_012040	93843.0	Mm.89564	NM_012040	ENSMUSG00000002012	Pnck	Bstk3|CaMKIbeta2|CaMKlb2|Camk1b|Punc|caMKlb1	pregnancy upregulated non-ubiquitously expressed CaM kinase	protein-coding	3.23	7.55	5.7	8.85	1.64	6.27	3.99	4.96	5.7	5.52	5.02	4.39
Merged-chr10-36971474-1	chr10	36971374	36971574	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3070.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	7.27	3.77	1.14	3.22	0.82	5.64	6.98	4.96	5.31	1.0	3.52	2.19
Merged-chr6-98525469-1	chr6	98525369	98525569	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182715.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	7.27	5.28	1.14	3.22	4.09	0.94	4.32	5.78	6.69	0.0	8.54	2.82
Merged-chr9-118488407-2	chr9	118488294	118488494	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10205.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	2.42	5.03	2.85	5.63	3.27	5.33	1.66	5.58	8.26	4.02	8.04	9.4
Merged-chr17-17973655-2	chr17	17973522	17973722	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3164.0	NM_008042	14294.0	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	5.65	6.04	5.13	7.64	4.91	4.7	3.65	4.18	4.72	5.52	5.53	7.21
Merged-chr2-155011470-1	chr2	155011370	155011570	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2100.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.0	0.5	1.14	0.8	0.82	6.9	3.32	3.79	0.2	1.0	0.0	2.82
Merged-chrX-153360152-1	chrX	153360052	153360252	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357183, intron 2 of 7)	intron (NM_001357183, intron 2 of 7)	539.0	NM_001357183	245671.0	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.0	1.26	1.71	4.02	5.73	9.09	6.64	4.01	2.36	1.0	6.03	2.51
Merged-chr9-7254974-1	chr9	7254874	7255074	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-17540.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.83	5.53	7.99	6.84	5.32	4.7	1.33	5.52	1.77	1.0	6.53	8.46
Merged-chr4-133451768-3	chr4	133451696	133451896	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28337.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	12.11	7.29	6.85	7.64	7.77	7.84	3.65	4.01	8.06	7.53	4.02	2.82
Merged-chr18-38995849-1	chr18	38995749	38995949	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	2704.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.48	4.53	9.13	3.22	6.55	9.72	4.65	4.37	4.13	14.06	6.03	3.45
Merged-chr6-3397423-1	chr6	3397323	3397523	+	597.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	2148.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.0	11.21	13.05	9.04	7.21
Merged-chr1-37428097-2	chr1	37427993	37428193	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198006, intron 2 of 2)	intron (NM_198006, intron 2 of 2)	2010.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	2.83	3.52	6.28	6.44	3.68	5.02	4.65	5.61	9.64	2.01	11.56	5.01
Merged-chr10-67711116-2	chr10	67711018	67711218	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.88	4.02	1.14	3.22	2.05	4.7	1.99	5.64	10.03	2.01	10.55	7.52
Merged-chr8-10834308-2	chr8	10834209	10834409	+	597.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	48145.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.85	7.04	2.28	8.85	9.82	7.21	2.66	6.93	4.33	7.53	5.02	4.7
Merged-chr14-58071094-2	chr14	58070996	58071196	+	597.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1590.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	1.62	4.28	0.0	4.02	4.09	5.02	2.99	3.39	3.93	2.01	3.52	8.14
Merged-chr18-36238690-1	chr18	36238590	36238790	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41530.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	2.42	1.26	2.28	5.63	7.36	5.33	4.98	8.38	6.29	8.03	2.01	4.07
Merged-chr5-41554460-1	chr5	41554360	41554560	+	597.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	153231.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.85	3.77	3.99	2.82	3.27	0.94	0.0	2.64	9.24	10.04	11.56	9.08
Merged-chr13-104743032-1	chr13	104742932	104743132	+	597.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	73921.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	14.54	9.06	13.69	11.26	0.0	0.0	0.0	0.81	0.59	0.5	0.0	5.01
Merged-chr5-64070237-1	chr5	64070137	64070337	+	597.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22702.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	10.09	7.04	11.41	7.64	1.64	3.76	0.66	3.79	8.65	4.52	8.54	4.07
Merged-chr16-93767705-1	chr16	93767605	93767805	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27196.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	3.63	7.8	6.85	3.62	8.18	11.29	4.65	5.38	4.13	1.0	4.52	1.25
Merged-chr19-18664060-1	chr19	18663960	18664160	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6720.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	1.21	1.76	5.13	7.24	10.64	5.64	5.65	5.1	5.31	4.02	10.05	2.19
Merged-chr7-46714726-1	chr7	46714626	46714826	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011315, intron 2 of 3)	intron (NM_011315, intron 2 of 3)	950.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	2.42	4.53	0.0	3.22	5.32	4.7	4.65	4.26	5.7	7.03	10.55	6.58
Merged-chr6-39567716-2	chr6	39567616	39567816	+	597.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6160.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	2.42	1.51	5.7	4.02	10.23	7.21	6.98	5.24	5.9	7.53	5.02	4.07
Merged-chr3-36533482-2	chr3	36533347	36533547	+	597.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12002.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	6.86	6.79	1.71	9.65	10.64	7.84	10.63	7.63	5.11	5.02	14.07	5.95
Merged-chr13-113865990-2	chr13	113865894	113866094	+	597.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71486.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.83	2.52	1.14	2.01	6.95	6.27	0.33	3.9	7.08	14.06	13.06	7.52
Merged-chr14-118088972-1	chr14	118088872	118089072	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-36726.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	4.44	10.31	9.7	8.04	6.55	6.27	7.97	7.46	9.64	6.53	6.53	6.89
Merged-chr11-69757413-2	chr11	69757276	69757476	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	1257.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	6.86	4.78	3.99	0.4	1.64	1.25	4.98	1.01	2.56	2.51	1.51	3.45
Merged-chr2-61712810-1	chr2	61712710	61712910	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021526, intron 1 of 11)	ORR1B2|LTR|ERVL-MaLR	1116.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	3.23	9.06	2.85	2.41	6.55	6.59	7.64	4.12	7.87	3.51	6.53	5.01
Merged-chr13-70043007-1	chr13	70042907	70043107	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-14659.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	0.0	0.5	0.0	0.4	0.41	0.63	0.0	0.0	11.21	6.03	3.01	5.01
Merged-chr19-5015174-1	chr19	5015074	5015274	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-8832.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	2.83	3.77	0.0	2.41	5.32	5.96	0.66	3.11	5.31	8.54	2.51	2.82
Merged-chr17-37203059-2	chr17	37202943	37203143	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-5077.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	10.09	6.54	11.98	7.24	8.59	4.08	12.29	1.49	6.69	4.52	7.03	9.08
Merged-chr3-69238690-1	chr3	69238590	69238790	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16271.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	1.21	9.56	1.71	7.24	7.36	6.9	8.3	5.66	3.74	12.05	7.54	4.7
Merged-chr1-105984292-1	chr1	105984192	105984392	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	5990.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.23	5.03	3.42	0.4	8.59	7.21	2.33	3.87	12.59	5.02	7.03	2.19
Merged-chr6-86209452-1	chr6	86209352	86209552	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031199, intron 1 of 5)	intron (NM_031199, intron 1 of 5)	14225.0	NM_031199	21802.0	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	4.04	0.5	2.85	2.41	2.05	2.51	4.65	11.02	0.59	1.0	2.01	1.25
Merged-chrX-13618748-1	chrX	13618648	13618848	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284503, intron 7 of 26)	intron (NM_001284503, intron 7 of 26)	-14021.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.81	4.53	0.57	2.41	5.73	2.2	3.32	4.4	1.18	4.52	2.51	1.25
Merged-chr6-35587112-1	chr6	35587012	35587212	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-47224.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.23	5.03	7.99	2.82	4.91	4.39	1.0	1.4	6.29	6.53	16.08	9.71
Merged-chr11-60209391-1	chr11	60209291	60209491	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1080.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	1.21	5.03	7.99	0.8	7.77	3.76	1.99	4.23	3.34	3.01	5.53	5.95
Merged-chr11-22630107-1	chr11	22630007	22630207	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117824.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.81	2.77	0.57	2.82	2.45	0.94	2.99	4.12	2.56	1.51	3.01	1.88
Merged-chr17-35382868-1	chr17	35382768	35382968	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001143689, exon 4 of 6)	exon (NM_001143689, exon 4 of 6)	3251.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	6.86	8.8	10.27	3.22	5.73	11.6	2.99	1.15	4.72	3.51	1.51	0.63
Merged-chr2-52905325-1	chr2	52905225	52905425	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MLT1A|LTR|ERVL-MaLR	47457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.44	4.53	3.42	3.62	1.23	2.51	5.31	4.37	13.37	6.03	5.02	3.45
Merged-chr4-129774926-1	chr4	129774826	129775026	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32623.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	3.63	2.52	8.56	2.41	6.14	3.45	1.66	5.36	5.9	1.51	4.02	0.63
Merged-chr18-54970055-1	chr18	54969955	54970155	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	20125.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.42	3.52	1.71	0.8	6.14	3.76	6.64	4.07	5.9	3.51	1.51	3.45
Merged-chr13-60671286-1	chr13	60671186	60671386	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69075.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.63	2.26	3.42	1.21	3.68	6.27	8.64	3.67	8.46	6.03	9.04	7.52
Merged-chr11-54182006-2	chr11	54181918	54182118	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045506, intron 2 of 2)	MER3|DNA|hAT-Charlie	31270.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	11.31	6.29	13.12	2.82	4.09	5.02	6.98	4.26	6.69	9.54	4.52	0.0
Merged-chr6-115991933-1	chr6	115991833	115992033	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	3072.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	1.21	2.26	3.42	2.01	6.95	4.7	3.99	2.5	3.34	0.5	2.01	3.45
Merged-chr2-52676256-1	chr2	52676156	52676356	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285426)	promoter-TSS (NM_001285426)	-113.0	NM_001285426	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	7.27	3.52	7.99	8.85	8.59	6.59	5.65	5.33	4.52	7.03	6.03	4.7
Merged-chr12-86048056-1	chr12	86047956	86048156	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	MER112|DNA|hAT-Charlie	30985.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	3.23	4.28	0.0	4.42	4.09	5.64	5.65	10.6	7.87	6.03	13.06	5.01
Merged-chr9-89210582-2	chr9	89210475	89210675	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026829)	promoter-TSS (NM_026829)	-615.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	2.83	5.79	0.0	2.82	2.45	1.25	3.32	2.72	9.44	8.54	15.58	5.95
Merged-chr6-114577541-1	chr6	114577441	114577641	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	-65556.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.85	6.29	14.83	8.04	2.86	2.51	0.33	3.25	1.97	1.0	2.01	4.7
Merged-chr6-120821519-1	chr6	120821419	120821619	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007510, intron 1 of 8)	B1_Mur3|SINE|Alu	1179.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	6.06	5.03	5.7	2.41	0.41	6.9	8.3	3.98	4.72	8.54	15.58	7.83
Merged-chr15-64079211-1	chr15	64079111	64079311	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-18763.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.81	2.77	5.13	0.4	1.64	7.21	1.99	1.77	1.57	5.02	6.53	0.63
Merged-chr11-99963090-1	chr11	99962990	99963190	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14615.0	NM_001085527	435286.0	Mm.457964	NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	3.23	3.52	2.28	5.63	0.0	1.88	0.66	2.36	4.13	2.01	12.06	14.41
Merged-chr14-87417764-1	chr14	87417664	87417864	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	1181.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.81	2.77	7.42	4.83	4.09	7.84	5.65	4.37	7.67	8.03	3.52	4.39
Merged-chr9-123683901-1	chr9	123683801	123684001	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-5069.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	6.86	3.27	3.99	4.02	4.5	5.96	1.33	4.85	6.1	4.52	4.52	4.39
Merged-chr5-38091200-1	chr5	38091100	38091300	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	51970.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	10.09	2.01	2.28	3.22	9.0	5.96	2.66	4.49	4.33	3.51	10.05	4.07
Merged-chr19-17219757-1	chr19	17219657	17219857	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181348, intron 19 of 19)	MLT2B5|LTR|ERVL	119748.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.23	6.29	7.42	7.64	3.27	3.14	2.66	2.78	0.59	0.5	0.5	0.31
Merged-chr10-19851566-1	chr10	19851466	19851666	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029529)	promoter-TSS (NM_029529)	-107.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	4.04	3.77	2.85	4.83	3.27	7.84	4.32	4.65	3.34	7.03	2.51	7.21
Merged-chr9-99469806-2	chr9	99469690	99469890	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028123)	promoter-TSS (NR_028123)	-631.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	5.25	5.03	2.28	1.61	3.68	5.64	4.98	5.33	5.31	8.03	7.54	2.19
Merged-chr16-4559143-1	chr16	4559043	4559243	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_031182, intron 1 of 6)	CpG	577.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	16.96	11.32	17.68	11.26	13.5	19.44	7.64	14.13	13.37	9.04	15.07	13.47
Merged-chr4-132930884-1	chr4	132930784	132930984	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8333.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	8.88	3.77	1.14	0.0	5.73	6.27	1.66	1.96	12.59	1.51	7.03	2.51
Merged-chr19-61226563-1	chr19	61226463	61226663	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009970, exon 5 of 12)	exon (NM_009970, exon 5 of 12)	1855.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	10.9	11.82	13.12	8.45	18.0	11.29	9.63	9.48	21.44	8.03	11.56	9.71
Merged-chr6-5255074-1	chr6	5254974	5255174	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	1159.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	4.44	4.78	0.0	4.02	9.0	6.9	3.65	4.26	5.51	6.03	6.03	4.07
Merged-chr16-65205060-1	chr16	65204960	65205160	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99276.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	8.08	0.25	5.7	5.63	8.18	3.76	1.33	4.82	7.67	11.55	1.51	0.94
Merged-chr9-37545051-1	chr9	37544951	37545151	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_020518)	TTS (NM_020518)	5796.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	6.06	6.79	5.13	9.65	8.59	5.33	4.65	5.66	5.7	10.04	6.03	5.33
Merged-chr11-3288720-1	chr11	3288620	3288820	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045109)	promoter-TSS (NR_045109)	-411.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	4.44	6.29	1.71	5.63	9.41	12.54	2.99	4.23	5.9	6.03	3.52	5.95
Merged-chr18-64517278-1	chr18	64517178	64517378	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-721.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	2.83	1.51	5.7	4.02	5.73	1.88	7.31	4.12	3.15	3.01	3.01	3.76
Merged-chr16-8412467-1	chr16	8412367	8412567	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029070, intron 2 of 3)	intron (NM_029070, intron 2 of 3)	12669.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	5.25	6.29	2.28	4.42	5.32	5.02	1.99	5.21	2.16	7.53	8.54	6.27
Merged-chr5-36742118-1	chr5	36742018	36742218	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6561.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.23	4.53	3.42	0.4	2.05	1.57	1.66	1.93	6.69	8.54	2.01	9.4
Merged-chr10-126498889-1	chr10	126498789	126498989	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	211502.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	4.85	2.77	5.7	8.85	4.91	5.02	6.64	8.58	1.18	0.5	0.0	1.25
Merged-chr2-102795205-1	chr2	102795105	102795305	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48445.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	3.23	4.53	2.85	5.63	4.5	4.7	1.99	5.27	7.28	3.51	8.54	6.58
Merged-chr16-31192548-1	chr16	31192448	31192648	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	ORR1E-int|LTR|ERVL-MaLR	8690.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	1.62	1.26	4.56	0.8	6.14	3.14	2.66	4.96	4.52	5.02	1.0	1.88
Merged-chrX-77798610-1	chrX	77798510	77798710	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2650.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	2.83	2.01	2.85	0.8	5.73	2.2	5.98	6.11	4.92	1.51	3.52	2.19
Merged-chr7-102076882-1	chr7	102076782	102076982	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011644, intron 3 of 21)	B2_Mm2|SINE|B2	5663.0	NM_011644	102443351.0	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	10.9	6.04	2.28	2.41	4.91	1.25	1.66	2.86	6.1	8.54	9.55	1.25
Merged-chr15-98580321-1	chr15	98580221	98580421	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001201322, intron 1 of 3)	intron (NM_001201322, intron 1 of 3)	9317.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	7.27	5.53	11.41	4.42	5.73	7.21	4.32	2.55	4.33	9.04	8.04	3.76
Merged-chr9-67839540-1	chr9	67839440	67839640	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-856.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	3.23	1.76	6.85	1.61	5.32	7.53	12.29	5.38	7.28	4.52	2.51	8.77
Merged-chr19-3451423-1	chr19	3451323	3451523	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36879.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	5.25	4.28	3.42	3.22	1.23	5.64	3.32	4.43	5.7	5.02	5.53	4.07
Merged-chr3-104633220-1	chr3	104633120	104633320	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5444.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	4.44	3.27	15.4	9.65	1.64	3.76	2.33	4.15	2.95	1.51	1.0	0.94
Merged-chr4-3781333-1	chr4	3781233	3781433	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 11 of 12)	ID2|SINE|ID	54322.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.02	2.77	6.28	2.41	0.41	2.51	3.32	1.26	0.39	4.02	5.53	3.76
Merged-chr13-113471023-1	chr13	113470923	113471123	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	31821.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.4	1.01	0.57	2.01	5.32	8.15	1.0	5.36	5.31	2.51	7.54	0.63
Merged-chr3-88149613-1	chr3	88149513	88149713	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7241.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	4.44	1.51	3.42	11.26	7.36	10.03	1.99	5.16	9.83	4.02	7.03	7.21
Merged-chr3-88610775-1	chr3	88610675	88610875	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5432.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.04	0.5	3.42	2.01	1.64	2.2	3.99	8.69	0.98	2.01	1.51	3.13
Merged-chr4-115903046-1	chr4	115902946	115903146	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12380.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	9.29	3.27	2.85	5.23	3.27	6.59	1.0	5.92	9.44	9.54	11.56	4.07
Merged-chr18-60848332-1	chr18	60848232	60848432	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011552, intron 1 of 24)	intron (NM_011552, intron 1 of 24)	632.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	4.44	6.29	1.71	4.02	8.18	3.45	2.66	4.93	9.64	4.52	6.03	7.21
Merged-chr13-58456555-1	chr13	58456455	58456655	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-53212.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	2.02	1.76	4.56	3.22	1.64	3.76	1.99	3.62	5.9	0.5	2.01	4.7
Merged-chr17-27569991-1	chr17	27569891	27570091	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4264.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	5.25	1.01	3.42	1.61	2.45	2.2	5.31	4.15	3.54	4.02	1.51	2.51
Merged-chr12-52618856-1	chr12	52618756	52618956	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-16534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.81	1.01	0.0	0.0	2.05	0.63	0.0	0.31	8.06	13.56	11.05	1.88
Merged-chr12-81755783-1	chr12	81755683	81755883	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25387.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	10.9	6.54	9.7	0.8	7.36	17.56	5.65	0.56	8.26	13.56	5.53	1.57
Merged-chr1-80659994-1	chr1	80659894	80660094	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5358.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.23	3.52	5.7	2.01	6.14	6.27	3.32	6.11	6.69	2.51	3.01	6.58
Merged-chr10-57584151-1	chr10	57584051	57584251	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-47830.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.81	2.77	3.99	2.41	9.41	6.59	1.33	6.17	7.08	0.0	9.04	4.39
Merged-chr9-73091858-1	chr9	73091758	73091958	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-10540.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	5.25	3.27	5.13	3.62	4.09	5.02	2.66	5.24	3.34	6.03	4.02	2.82
Merged-chr13-108329920-1	chr13	108329820	108330020	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	13583.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	5.25	4.28	1.71	4.02	6.95	7.53	2.99	4.21	7.28	4.52	6.53	3.45
Merged-chr2-173361809-1	chr2	173361709	173361909	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85276.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.57	0.4	6.55	0.63	3.99	5.07	2.36	0.0	8.54	1.88
Merged-chr17-48818018-1	chr17	48817918	48818118	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	-114564.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	2.42	2.01	2.28	1.61	6.55	5.02	4.32	5.64	2.16	0.0	5.53	3.76
Merged-chr15-34237532-2	chr15	34237432	34237632	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033521)	promoter-TSS (NM_033521)	-494.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	9.29	7.29	1.14	6.03	11.45	4.08	5.65	5.16	2.56	9.04	1.51	5.64
Merged-chr19-55935971-1	chr19	55935871	55936071	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40650.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.62	2.26	8.56	1.61	3.27	2.51	4.32	1.21	3.74	5.02	3.01	4.7
Merged-chr4-155481982-2	chr4	155481889	155482089	+	596.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9372.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.46	4.53	2.85	1.61	8.59	4.39	4.65	6.45	8.46	8.54	12.06	7.83
Merged-chr6-85141225-2	chr6	85141126	85141326	+	596.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3462.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	8.48	8.55	8.56	4.83	9.41	12.86	5.31	8.1	5.51	7.53	8.54	10.34
Merged-chr7-99132806-2	chr7	99132691	99132891	+	596.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	8353.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.25	7.8	10.84	4.42	7.36	4.7	5.31	4.49	3.93	9.04	8.04	3.45
Merged-chr1-85897723-2	chr1	85897587	85897787	+	596.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	3177.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	6.86	2.26	1.14	4.83	8.18	9.72	2.33	3.93	5.9	7.03	5.53	3.76
Merged-chr1-85960425-2	chr1	85960349	85960549	+	596.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033290, intron 1 of 1)	MIRc|SINE|MIR	606.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	4.44	7.8	1.71	6.44	6.55	5.64	1.99	3.0	7.67	11.05	8.54	10.02
Merged-chr15-95851132-1	chr15	95851032	95851232	+	596.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	MTB|LTR|ERVL-MaLR	-21060.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.27	6.29	6.28	1.61	6.95	5.02	3.65	3.67	13.18	3.01	9.55	5.64
Merged-chr2-122243962-2	chr2	122243819	122244019	+	596.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146126, intron 1 of 8)	ID_B1|SINE|B4	9080.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	8.88	5.03	2.85	11.26	3.27	5.02	1.99	1.74	8.26	4.52	9.04	5.64
Merged-chr10-63428958-1	chr10	63428858	63429058	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1140.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	2.42	1.51	5.13	2.01	4.5	4.08	3.32	3.14	8.26	8.54	4.52	9.71
Merged-chr11-94870491-1	chr11	94870391	94870591	+	596.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20898.0	NM_001205037	432591.0	Mm.370372	NM_001205037		Gm11544	-	predicted gene 11544	protein-coding	0.81	3.02	5.7	7.24	2.86	3.76	0.0	2.07	10.23	4.02	9.55	6.27
Merged-chr11-3663617-2	chr11	3663506	3663706	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159288, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	4906.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	5.65	4.28	2.85	2.41	7.77	5.96	2.33	7.04	9.64	6.03	13.57	10.02
Merged-chr9-115862994-1	chr9	115862894	115863094	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-46461.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	5.65	4.28	5.13	6.03	5.73	5.64	5.98	5.1	5.9	3.01	2.51	2.82
Merged-chr2-71104877-2	chr2	71104775	71104975	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13179.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	12.11	5.03	9.7	3.62	7.77	7.84	1.99	6.06	10.42	1.0	4.02	2.82
Merged-chr10-24809030-1	chr10	24808930	24809130	+	596.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134005, intron 7 of 24)	RSINE1|SINE|B4	27165.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	2.02	2.01	2.28	0.4	2.05	1.25	1.0	3.95	10.62	4.52	9.04	3.13
Merged-chr2-145890569-1	chr2	145890469	145890669	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12672.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.04	6.04	6.28	4.42	2.86	9.09	4.32	5.07	1.77	3.51	5.02	1.25
Merged-chr3-53041055-1	chr3	53040955	53041155	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175386)	promoter-TSS (NM_175386)	-492.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	2.42	5.28	6.85	4.02	9.0	5.64	2.66	5.61	3.74	10.54	4.02	1.25
Merged-chr2-75846457-2	chr2	75846349	75846549	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172666, intron 1 of 19)	B1_Mus1|SINE|Alu	14272.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.06	6.04	6.28	8.85	5.73	8.78	4.65	2.61	10.23	8.03	10.05	1.57
Merged-chr16-21211068-2	chr16	21210969	21211169	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010143, intron 1 of 15)	intron (NM_010143, intron 1 of 15)	6274.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	6.46	2.77	6.28	8.04	5.73	3.14	4.32	5.1	5.9	6.03	9.04	2.82
Merged-chr12-32828505-1	chr12	32828405	32828605	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	4389.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	4.04	7.8	5.13	2.41	6.55	5.96	7.31	4.79	3.74	8.03	4.02	4.07
Merged-chr9-72957532-1	chr9	72957432	72957632	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1253.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	4.04	3.52	11.41	8.85	7.77	6.27	2.66	5.78	8.85	8.03	5.02	4.07
Merged-chr7-75684738-1	chr7	75684638	75684838	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163600.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.83	0.75	5.7	7.64	4.91	5.64	0.66	4.65	2.16	2.51	3.01	1.25
Merged-chr16-90744624-1	chr16	90744524	90744724	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029844, intron 1 of 2)	(CAGAG)n|Simple_repeat|Simple_repeat	6300.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.81	1.01	2.28	5.63	4.91	3.76	5.31	4.07	3.54	2.01	4.52	2.51
Merged-chr17-50110742-1	chr17	50110642	50110842	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79755.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.81	0.75	1.71	0.8	4.91	7.21	2.99	3.79	1.77	2.51	0.5	3.13
Merged-chr18-80280606-2	chr18	80280499	80280699	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025861, intron 4 of 5)	intron (NM_025861, intron 4 of 5)	24293.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.23	6.04	2.28	8.85	5.32	7.84	6.98	3.08	10.23	9.54	9.55	5.01
Merged-chr12-111469671-3	chr12	111469577	111469777	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16146.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	4.04	8.55	11.41	4.02	4.5	9.72	2.66	3.87	9.44	10.54	10.55	5.01
Merged-chr18-84536056-1	chr18	84535956	84536156	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	53448.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	4.02	1.71	4.02	2.05	4.39	8.64	5.75	7.47	3.01	4.52	2.51
Merged-chr2-28197720-2	chr2	28197618	28197818	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	4625.0	NM_001038614	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	5.65	7.04	18.25	8.04	2.86	2.82	1.99	4.29	7.67	8.54	11.05	7.52
Merged-chr7-132690922-1	chr7	132690822	132691022	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	B4A|SINE|B4	80279.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.63	1.01	4.56	4.83	5.32	1.88	5.65	4.79	0.39	2.01	6.03	1.25
Merged-chr6-121184450-1	chr6	121184350	121184550	+	596.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001304773, exon 1 of 5)	exon (NM_001304773, exon 1 of 5)	783.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	4.85	4.78	6.28	3.62	6.14	4.39	2.99	7.23	5.51	4.02	2.51	4.7
Merged-chr9-78586942-1	chr9	78586842	78587042	+	596.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1103.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	2.02	1.01	5.7	2.41	8.18	5.02	9.63	4.6	3.93	0.5	2.51	1.57
Merged-chr3-89428089-1	chr3	89427989	89428189	+	596.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011368, intron 12 of 12)	intron (NM_011368, intron 12 of 12)	-2125.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	5.65	2.52	0.57	0.0	9.41	6.27	4.32	5.86	2.16	2.01	4.52	3.76
Merged-chr13-64154850-2	chr13	64154734	64154934	+	596.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1635.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	4.44	4.02	5.7	0.4	6.55	5.96	3.99	7.29	8.06	4.52	12.56	7.52
Merged-chr8-126705609-2	chr8	126705498	126705698	+	596.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112162.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.04	5.28	2.28	2.41	3.27	5.33	7.97	5.69	11.01	9.54	10.55	7.52
Merged-chr14-79508036-1	chr14	79507936	79508136	+	596.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-7638.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.85	4.53	3.42	5.23	11.05	8.15	8.3	4.96	6.88	4.52	2.51	3.13
Merged-chr9-21153713-2	chr9	21153622	21153822	+	596.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3816.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	1.62	2.52	3.99	8.04	4.91	5.64	1.99	4.37	3.54	5.52	14.57	3.13
Merged-chr16-91363654-1	chr16	91363554	91363754	+	596.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9129.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	2.83	3.52	3.42	0.8	9.82	7.53	6.98	5.44	4.92	12.05	3.52	2.19
Merged-chr18-36240089-3	chr18	36239974	36240174	+	596.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41088.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	6.06	4.02	6.28	7.24	6.55	6.27	6.64	5.07	11.21	8.54	17.59	6.89
Merged-chr4-154899877-1	chr4	154899777	154899977	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-834.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	6.06	3.02	1.14	0.0	6.95	2.82	1.33	1.74	9.83	8.54	3.01	6.27
Merged-chr2-109918780-1	chr2	109918680	109918880	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	1133.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	1.62	5.79	1.14	4.02	4.5	1.57	5.31	3.79	3.15	2.01	4.02	1.57
Merged-chr8-40894104-1	chr8	40894004	40894204	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007514, intron 1 of 11)	intron (NM_007514, intron 1 of 11)	31737.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	1.21	1.51	0.0	1.61	0.41	0.31	1.33	2.61	8.06	10.04	7.03	7.21
Merged-chr11-96407916-1	chr11	96407816	96408016	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42158.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	2.83	1.76	1.14	6.03	2.86	8.47	1.0	4.63	1.77	3.51	4.02	2.82
Merged-chr19-17342493-2	chr19	17342394	17342594	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	MIRb|SINE|MIR	-2989.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.46	4.28	0.57	3.22	3.68	5.33	5.98	4.29	11.6	9.04	5.02	5.33
Merged-chr6-108505563-1	chr6	108505463	108505663	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 53 of 61)	ID4|SINE|ID	15820.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.65	2.77	0.0	1.61	3.27	7.21	2.66	5.61	1.57	7.03	8.54	3.45
Merged-chr6-142538702-1	chr6	142538602	142538802	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30745.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	3.52	4.56	0.0	7.36	0.0	2.33	4.54	2.16	4.02	2.01	3.13
Merged-chr4-62500146-1	chr4	62500046	62500246	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024257, intron 1 of 1)	intron (NM_024257, intron 1 of 1)	2054.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	6.06	2.01	0.0	0.0	3.68	2.51	1.0	1.68	0.59	1.0	1.0	1.25
Merged-chr4-10998899-1	chr4	10998799	10998999	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	8720.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	7.27	4.78	5.13	4.83	4.5	4.08	2.33	6.2	10.62	4.52	9.04	7.21
Merged-chr3-8762419-1	chr3	8762319	8762519	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95381.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.44	0.75	2.28	7.64	6.55	3.76	0.0	4.46	6.1	3.51	7.54	5.64
Merged-chr7-19517902-1	chr7	19517802	19518002	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027116)	promoter-TSS (NM_027116)	-829.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	1.62	3.77	3.99	5.23	3.68	1.57	3.99	5.05	2.36	3.51	2.51	5.33
Merged-chrX-23321164-2	chrX	23321059	23321259	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026167, intron 2 of 8)	intron (NM_026167, intron 2 of 8)	-35600.0	NM_001290476	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	3.63	4.02	1.14	4.83	1.64	6.27	3.32	5.5	11.21	9.54	13.06	8.14
Merged-chr10-37222868-1	chr10	37222768	37222968	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83942.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.46	0.0	4.56	0.8	5.73	12.54	8.64	4.91	9.44	10.54	9.04	0.63
Merged-chr2-120101252-1	chr2	120101152	120101352	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53323.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	2.42	2.01	1.71	2.01	3.27	2.82	1.33	5.07	10.03	5.02	13.57	6.27
Merged-chr17-63403391-1	chr17	63403291	63403491	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-90418.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.04	8.8	9.7	0.0	4.09	3.14	1.0	3.73	5.31	5.52	2.01	0.0
Merged-chrX-36561854-1	chrX	36561754	36561954	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER90a|LTR|ERV1	-36339.0	NM_016783	53328.0	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema|mPR	progesterone receptor membrane component 1	protein-coding	3.23	2.52	6.28	0.8	6.95	4.7	3.65	7.04	5.11	7.53	4.02	1.88
Merged-chr2-36244014-1	chr2	36243914	36244114	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	13588.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.44	5.28	11.98	6.03	4.09	2.82	4.32	5.83	6.69	11.05	2.51	7.52
Merged-chr2-30677144-2	chr2	30677042	30677242	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136917, intron 1 of 3)	CpG	869.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	5.65	7.55	1.71	0.8	4.5	2.2	2.33	3.9	3.54	3.51	1.51	1.57
Merged-chr2-147014416-1	chr2	147014316	147014516	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	B1_Mur1|SINE|Alu	1417.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.04	6.04	2.28	1.61	7.36	14.11	5.31	4.74	6.29	7.53	4.02	3.76
Merged-chr19-45333177-1	chr19	45333077	45333277	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-30557.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	6.06	4.02	4.56	5.63	12.27	6.9	3.65	4.63	3.74	4.02	8.54	5.01
Merged-chr2-150451369-1	chr2	150451269	150451469	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310645, intron 1 of 3)	intron (NM_001310645, intron 1 of 3)	132.0	NM_001310645	668923.0	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	ZIPO-II	zinc finger protein 442	protein-coding	1.62	2.01	5.13	3.22	2.45	2.2	1.66	3.34	8.06	3.01	6.53	9.71
Merged-chr19-55742621-2	chr19	55742521	55742721	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 1 of 15)	CpG	811.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.21	5.28	3.42	6.03	1.23	3.14	2.99	5.94	7.87	5.52	1.0	5.33
Merged-chr7-145001698-1	chr7	145001598	145001798	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61773.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.06	2.77	3.42	7.64	3.68	2.51	3.99	4.49	4.92	4.52	4.02	2.82
Merged-chrX-53693401-1	chrX	53693301	53693501	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6874.0	NR_102724	100504039.0		NR_102724		LOC100504039	-	uncharacterized LOC100504039	ncRNA	4.04	5.53	10.84	9.25	2.45	3.14	5.65	13.68	6.29	8.54	5.53	5.01
Merged-chr11-70438111-1	chr11	70438011	70438211	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106064)	promoter-TSS (NR_106064)	-144.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	2.02	5.28	0.0	0.4	8.59	4.39	4.32	2.33	11.41	8.03	9.55	3.13
Merged-chr16-91736447-1	chr16	91736347	91736547	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7076.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	1.62	2.26	11.41	10.05	3.27	2.51	2.33	5.61	2.16	2.01	0.0	3.76
Merged-chr4-120858847-1	chr4	120858747	120858947	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	4048.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.23	2.52	9.13	7.24	2.45	5.33	2.66	1.12	10.03	5.52	6.53	2.82
Merged-chr11-62006539-2	chr11	62006430	62006630	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	49767.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	10.09	6.04	3.42	6.44	4.91	7.21	3.99	4.71	6.88	12.05	9.04	6.58
Merged-chr15-4731056-1	chr15	4730956	4731156	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016704, intron 1 of 15)	Lx7|LINE|L1	3846.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	5.65	3.02	1.71	3.22	13.09	4.39	2.33	3.53	8.65	8.03	13.57	5.33
Merged-chr13-23534305-1	chr13	23534205	23534405	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175661)	TTS (NM_175661)	394.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	3.63	3.02	5.7	1.61	4.91	3.45	3.32	4.68	8.46	4.02	10.05	2.19
Merged-chr3-9782603-1	chr3	9782503	9782703	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	51076.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.83	3.52	1.71	12.87	3.68	0.0	7.64	5.66	2.36	1.51	2.01	0.63
Merged-chr17-10744045-1	chr17	10743945	10744145	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96146.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.81	0.75	2.85	2.41	5.73	5.33	6.64	8.05	4.33	5.52	9.55	6.27
Merged-chr2-129393742-1	chr2	129393642	129393842	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22603.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.06	6.79	5.7	1.61	4.09	2.2	0.0	1.07	10.03	10.54	12.06	6.58
Merged-chr1-133039644-1	chr1	133039544	133039744	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6368.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	8.08	3.77	3.42	8.85	11.45	6.9	1.33	2.92	8.85	1.51	11.56	5.95
Merged-chr5-110330703-2	chr5	110330599	110330799	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011132, intron 41 of 48)	intron (NM_011132, intron 41 of 48)	12336.0	NM_153400	231602.0	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	2.83	5.53	10.27	9.25	8.18	5.33	2.66	5.41	5.11	5.52	14.57	2.51
Merged-chr4-122997250-1	chr4	122997150	122997350	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008506, intron 1 of 1)	intron (NM_008506, intron 1 of 1)	1319.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	6.46	4.78	1.14	4.83	5.32	5.33	2.33	3.59	6.88	10.04	21.61	2.82
Merged-chr2-57208675-1	chr2	57208575	57208775	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	26844.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	8.08	7.29	9.7	0.8	1.23	2.51	1.99	3.84	1.18	5.02	4.52	1.88
Merged-chr3-103112430-1	chr3	103112330	103112530	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15126.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	1.62	4.53	5.7	4.42	3.27	5.33	3.65	4.63	0.98	1.0	1.51	0.94
Merged-chr6-137826818-1	chr6	137826718	137826918	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	72241.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	2.83	2.26	1.14	2.41	0.82	4.39	3.32	4.77	0.98	2.01	4.52	1.57
Merged-chr3-96052165-1	chr3	96052065	96052265	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013841, intron 3 of 14)	intron (NM_013841, intron 3 of 14)	6290.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	4.44	7.29	2.28	6.03	9.41	3.76	2.33	4.63	10.42	3.01	4.02	1.25
Merged-chr10-127945549-1	chr10	127945449	127945649	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47014.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	8.08	4.53	4.56	4.83	2.86	5.33	0.66	3.42	5.11	11.55	7.03	7.52
Merged-chr16-57217669-1	chr16	57217569	57217769	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	13797.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.85	4.53	3.99	5.63	12.27	2.82	2.99	3.76	5.31	0.0	1.0	1.57
Merged-chrX-74273899-1	chrX	74273799	74273999	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_052835)	TTS (NM_052835)	206.0	NR_106059	102466804.0		NR_106059	ENSMUSG00000099226	Mir7091	Gm27381|mmu-mir-7091	microRNA 7091	ncRNA	0.0	2.26	1.71	4.42	5.73	1.88	1.66	7.07	1.77	0.5	4.52	3.76
Merged-chr5-115194373-1	chr5	115194273	115194473	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310712)	promoter-TSS (NM_001310712)	8.0	NM_001310712	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	5.65	2.77	2.28	4.83	2.05	2.2	0.0	1.82	6.29	0.5	5.02	1.57
Merged-chr2-128726595-1	chr2	128726495	128726695	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	27680.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.65	1.51	9.7	0.8	3.27	5.02	1.33	4.04	9.44	6.03	4.02	5.95
Merged-chr7-81493517-1	chr7	81493417	81493617	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001193274)	TTS (NM_001193274)	408.0	NM_021492	11775.0	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	1.62	5.79	3.99	4.02	5.32	3.14	5.98	5.02	3.74	4.02	4.02	5.95
Merged-chrX-36103790-1	chrX	36103690	36103890	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8318.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	4.85	8.8	3.42	2.82	6.95	3.76	1.33	7.15	3.15	0.0	14.57	5.95
Merged-chr12-83502431-1	chr12	83502331	83502531	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14695.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	5.25	3.02	1.14	0.0	5.73	4.08	0.0	4.65	4.92	4.52	8.04	3.13
Merged-chr3-116414662-1	chr3	116414562	116414762	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 2 of 13)	intron (NM_001173553, intron 2 of 13)	9370.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	3.02	0.0	4.02	3.27	6.59	1.0	0.03	12.78	2.01	2.51	7.52
Merged-chr6-120358847-1	chr6	120358747	120358947	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045558, intron 1 of 9)	intron (NR_045558, intron 1 of 9)	-1378.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	5.65	5.03	2.28	3.22	0.82	5.96	0.0	4.49	2.95	3.01	3.01	2.51
Merged-chrX-96236226-1	chrX	96236126	96236326	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3700.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	5.65	5.28	2.28	4.02	9.0	8.78	4.65	5.1	8.46	4.02	6.53	0.94
Merged-chr2-167783630-1	chr2	167783530	167783730	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	92453.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.75	4.56	1.21	0.0	2.51	1.0	4.71	4.13	2.51	15.58	6.89
Merged-chr3-116211842-1	chr3	116211742	116211942	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	41642.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	1.62	2.26	7.99	4.02	1.64	5.96	2.33	4.04	3.74	4.02	2.51	6.58
Merged-chr5-5333137-1	chr5	5333037	5333237	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	47114.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.42	2.52	12.55	7.64	1.23	5.02	4.98	6.79	5.11	9.54	6.53	0.94
Merged-chr5-149635809-1	chr5	149635709	149635909	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347534, intron 1 of 16)	intron (NM_001347534, intron 1 of 16)	506.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	6.86	4.28	11.41	10.05	10.23	6.59	8.97	8.13	9.05	10.54	3.01	8.77
Merged-chr2-159607778-1	chr2	159607678	159607878	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-339563.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	6.46	4.02	4.56	2.41	11.45	6.27	5.98	4.26	6.1	11.05	3.52	0.63
Merged-chr7-43442673-1	chr7	43442573	43442773	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028849, intron 3 of 4)	Lx6|LINE|L1	-1399.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	3.63	4.28	0.0	0.0	9.41	0.31	1.66	5.24	7.08	3.51	10.05	3.76
Merged-chr1-84449673-1	chr1	84449573	84449773	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-165028.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	1.62	2.26	0.0	0.8	4.09	1.88	4.98	5.24	0.59	4.02	2.51	0.0
Merged-chr5-124028041-1	chr5	124027941	124028141	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	URR1B|DNA|hAT-Charlie	4219.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	2.42	4.02	8.56	4.83	4.5	1.25	1.0	2.38	12.39	9.54	5.53	5.33
Merged-chr15-82348475-1	chr15	82348375	82348575	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026914, intron 2 of 2)	intron (NM_026914, intron 2 of 2)	2429.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	1.62	4.02	4.56	1.61	12.27	4.39	1.99	5.19	10.23	2.01	0.5	1.88
Merged-chr1-107566627-1	chr1	107566527	107566727	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23379.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	3.23	0.5	5.7	1.61	6.55	3.14	1.0	4.85	4.52	0.0	5.02	5.64
Merged-chr7-49843513-1	chr7	49843413	49843613	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133740, intron 13 of 15)	intron (NM_133740, intron 13 of 15)	65155.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	2.02	1.51	4.56	3.22	5.73	3.45	1.33	7.09	6.1	4.52	3.01	5.01
Merged-chr9-22625003-1	chr9	22624903	22625103	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 9 of 22)	intron (NM_001360259, intron 9 of 22)	149288.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.63	1.01	0.57	4.02	1.23	5.33	1.0	3.0	4.13	1.0	4.02	3.76
Merged-chr6-114916068-1	chr6	114915968	114916168	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5753.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	1.62	1.26	0.57	6.44	6.95	1.88	1.66	5.83	1.57	4.52	4.52	2.51
Merged-chr1-52858385-1	chr1	52858285	52858485	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146108, intron 2 of 13)	RLTR13C2|LTR|ERVK	13347.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	3.63	2.26	2.28	8.85	6.55	9.41	3.32	3.59	8.06	14.06	8.54	6.89
Merged-chr9-100506090-1	chr9	100505990	100506190	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	766.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	2.83	7.55	2.28	2.41	3.68	8.78	2.66	3.87	8.46	3.01	6.53	3.45
Merged-chr8-117157113-1	chr8	117157013	117157213	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1022.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	5.65	4.53	4.56	1.21	6.14	4.39	8.97	6.28	1.77	1.51	3.52	1.88
Merged-chr10-118585987-1	chr10	118585887	118586087	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-29462.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.23	4.53	4.56	7.24	0.82	2.51	8.97	4.68	7.08	0.5	5.02	3.13
Merged-chr16-17001243-1	chr16	17001143	17001343	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038663, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	17861.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	4.04	3.02	0.0	4.02	6.95	3.45	6.31	4.91	2.36	6.03	0.5	3.76
Merged-chr12-36511505-1	chr12	36511405	36511605	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289503, intron 6 of 9)	intron (NM_001289503, intron 6 of 9)	95889.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	0.0	0.5	0.0	4.02	1.23	1.57	1.33	4.09	10.23	7.03	9.04	2.19
Merged-chr16-36067604-1	chr16	36067504	36067704	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	B3A|SINE|B2	3911.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	5.25	4.02	0.0	1.61	4.91	5.02	6.64	4.74	9.44	9.54	9.55	4.07
Merged-chr4-151851383-3	chr4	151851292	151851492	+	595.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	B4|SINE|B4	10376.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.04	5.28	5.7	9.65	11.05	8.78	6.64	3.53	6.88	10.04	12.06	8.77
Merged-chr5-43845798-2	chr5	43845715	43845915	+	595.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22994.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.42	3.52	4.56	7.24	7.36	10.35	9.97	3.48	11.01	8.03	8.04	0.63
Merged-chr1-34841919-2	chr1	34841872	34842072	+	595.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	1078.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	2.52	3.99	1.61	1.64	3.45	3.65	4.23	3.74	0.5	6.53	2.82
Merged-chr7-118797822-1	chr7	118797722	118797922	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	57551.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	2.83	6.04	4.56	3.22	7.36	4.39	2.33	5.1	10.03	5.52	3.01	7.52
Merged-chr15-57881003-2	chr15	57880917	57881117	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024207, intron 2 of 7)	intron (NM_024207, intron 2 of 7)	11401.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	4.04	6.79	7.99	2.82	4.09	11.29	4.98	4.6	9.24	5.52	7.03	10.34
Merged-chr2-114605415-2	chr2	114605289	114605489	+	595.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025675, intron 3 of 8)	L1_Mus4|LINE|L1	49575.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	2.83	4.78	5.7	10.05	4.91	4.7	1.33	1.99	4.33	5.02	13.57	6.58
Merged-chr4-119667574-1	chr4	119667474	119667674	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8629.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	3.23	3.52	3.99	3.22	6.14	6.59	4.98	3.98	4.52	6.53	2.51	3.76
Merged-chr11-109377506-2	chr11	109377412	109377612	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	MTD|LTR|ERVL-MaLR	-13858.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	7.27	9.06	6.28	4.83	5.73	5.33	1.99	6.93	9.64	11.05	5.53	5.01
Merged-chr18-53463871-1	chr18	53463771	53463971	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033281)	promoter-TSS (NM_001033281)	-675.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	2.83	4.02	3.42	9.65	5.32	8.47	1.33	5.94	2.75	8.03	2.51	3.45
Merged-chr3-57847119-2	chr3	57847006	57847206	+	595.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019410, intron 1 of 2)	CpG	651.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	4.04	5.79	8.56	9.25	7.77	13.17	7.31	4.91	8.26	10.54	13.06	5.95
Merged-chr5-12184580-1	chr5	12184480	12184680	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-198586.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	2.83	3.02	5.13	12.07	4.09	1.25	3.99	8.47	7.67	5.52	23.11	2.82
Merged-chr11-49103476-1	chr11	49103376	49103576	+	595.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10281.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	3.23	6.04	2.28	1.61	9.82	8.47	1.99	4.29	9.64	12.05	12.06	7.21
Merged-chrX-155171905-1	chrX	155171805	155172005	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24056.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	4.44	3.02	2.28	4.83	5.32	4.7	5.65	6.5	4.33	2.01	9.04	0.31
Merged-chr15-101339681-2	chr15	101339563	101339763	+	595.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29689.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	8.48	10.56	10.27	12.87	5.32	9.72	3.65	4.79	9.83	8.03	5.02	4.07
Merged-chr11-106098532-1	chr11	106098432	106098632	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	13630.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	2.02	2.01	2.28	6.03	6.55	10.03	7.31	6.08	4.72	8.03	5.53	5.64
Merged-chr1-180987954-2	chr1	180987859	180988059	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29610.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	6.46	6.29	6.28	4.02	4.09	5.96	1.66	3.17	10.23	8.54	9.04	8.14
Merged-chr10-127595476-1	chr10	127595376	127595576	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	25672.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.08	3.77	3.99	0.0	5.32	3.76	7.64	5.3	4.92	6.53	5.53	4.39
Merged-chr9-90059527-1	chr9	90059427	90059627	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	RMER15|LTR|ERVL	5260.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.25	4.02	4.56	6.03	7.36	6.27	3.65	5.61	5.9	4.52	8.54	5.01
Merged-chr8-105546652-1	chr8	105546552	105546752	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	19412.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	2.42	7.55	1.71	0.8	4.5	3.14	3.32	5.19	3.15	5.02	3.01	3.13
Merged-chr10-39470589-1	chr10	39470489	39470689	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	100790.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.81	0.5	1.14	0.8	6.95	0.63	5.31	5.75	4.92	2.01	3.01	0.63
Merged-chr8-6138826-2	chr8	6138715	6138915	+	595.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1033528.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	7.67	7.29	13.12	10.05	0.0	0.0	0.66	2.58	7.47	14.56	9.55	5.64
Merged-chr4-125099676-2	chr4	125099544	125099744	+	595.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151472, intron 4 of 7)	intron (NR_151472, intron 4 of 7)	14510.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	8.48	8.8	5.7	6.44	7.77	9.09	4.32	5.69	7.67	13.05	7.03	4.7
Merged-chr12-85287165-2	chr12	85287054	85287254	+	595.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1437.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	4.85	2.52	1.71	1.61	7.36	8.47	1.33	4.82	11.21	4.52	9.55	7.21
Merged-chr13-60826211-2	chr13	60826114	60826314	+	595.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23370.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	3.23	5.03	8.56	3.22	4.09	4.08	3.32	7.01	11.41	4.52	11.56	7.21
Merged-chr14-21049058-3	chr14	21048969	21049169	+	595.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018829, intron 1 of 8)	B3|SINE|B2	3373.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	8.88	7.29	0.0	0.8	6.55	8.78	3.65	4.71	10.23	14.06	13.57	8.14
Merged-chr2-153528476-3	chr2	153528399	153528599	+	595.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	CpG	1472.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.65	6.54	4.56	4.02	6.55	2.82	2.66	3.76	8.26	5.02	12.06	6.89
Merged-chr1-67017300-1	chr1	67017200	67017400	+	595.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001190984, intron 4 of 9)	MLTR31FA_MM|LTR|ERVK	21534.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	7.67	7.8	8.56	8.85	2.45	1.88	0.66	2.3	0.79	2.01	3.01	0.0
Merged-chr13-89379325-1	chr13	89379225	89379425	+	595.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-161311.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	5.25	3.52	6.28	3.62	2.05	1.57	0.0	3.08	10.03	5.52	9.55	7.52
Merged-chr6-128630646-1	chr6	128630546	128630746	+	595.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7712.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	1.21	2.52	2.28	2.41	8.18	5.02	6.64	4.4	3.54	4.02	8.54	6.27
Merged-chr16-45757088-2	chr16	45756985	45757185	+	595.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357078, intron 14 of 16)	intron (NM_001357078, intron 14 of 16)	-14130.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	5.65	4.53	2.85	4.02	10.64	5.33	8.64	5.27	6.49	4.02	11.56	6.89
Merged-chr14-50799998-2	chr14	50799899	50800099	+	595.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4271.0	NM_001111119	239083.0	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	4.85	5.53	15.4	2.41	3.68	3.14	1.99	6.5	8.26	10.04	4.52	9.71
Merged-chr7-67529240-2	chr7	67529143	67529343	+	595.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	115993.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	10.5	7.55	7.42	10.46	9.0	7.53	2.66	4.93	2.75	0.0	1.51	0.31
Merged-chr18-75465128-2	chr18	75465038	75465238	+	595.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-49507.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.65	3.77	5.7	7.24	9.82	7.53	9.3	4.18	5.51	12.05	6.53	9.08
Merged-chr16-52089616-2	chr16	52089516	52089716	+	595.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	58067.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	7.27	3.27	7.99	2.41	7.77	5.96	12.62	5.38	11.21	9.54	8.54	1.88
Merged-chr19-3581598-3	chr19	3581592	3581792	+	595.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS-int|LTR|ERV1	-5943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.4	3.27	0.57	2.41	2.05	5.64	2.66	1.74	2.56	4.02	3.52	4.39
Merged-chr11-52343407-3	chr11	52343301	52343501	+	595.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17461.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	4.85	7.04	7.42	4.02	9.0	10.35	9.97	4.63	7.47	6.03	6.03	5.33
Merged-chr8-105930815-3	chr8	105930725	105930925	+	595.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3037.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	5.65	6.79	7.99	2.41	4.09	13.17	1.99	5.24	10.23	5.02	11.56	6.89
Merged-chr5-31941747-2	chr5	31941645	31941845	+	595.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-194727.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	8.88	6.29	6.85	8.85	3.27	3.14	6.31	7.23	7.87	0.0	4.02	5.33
Merged-chr3-88140046-1	chr3	88139946	88140146	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2326.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.63	7.8	1.14	6.03	6.95	1.88	4.65	9.31	6.69	9.04	14.07	8.46
Merged-chr11-23763625-1	chr11	23763525	23763725	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	B4A|SINE|B4	7345.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	8.08	1.51	5.13	0.8	2.86	4.7	0.33	1.6	5.9	1.51	3.52	2.51
Merged-chr10-117810002-1	chr10	117809902	117810102	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17297.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.81	1.76	2.28	2.41	0.41	5.33	1.0	6.25	2.36	1.0	6.53	2.19
Merged-chr12-40508051-1	chr12	40507951	40508151	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	61998.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.04	0.5	0.0	0.8	4.09	0.31	4.65	4.99	4.33	3.51	1.0	1.57
Merged-chr7-122453989-1	chr7	122453889	122454089	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 3 of 16)	intron (NM_001316672, intron 3 of 16)	164864.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	2.28	0.0	5.73	2.82	4.98	7.91	1.57	0.0	0.0	2.19
Merged-chr2-69823327-1	chr2	69823227	69823427	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360394, intron 1 of 3)	intron (NM_001360394, intron 1 of 3)	486.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	2.83	1.26	2.28	3.22	2.45	5.96	5.31	5.47	2.16	2.01	1.0	2.51
Merged-chr11-75548484-1	chr11	75548384	75548584	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-2945.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	1.62	7.04	9.7	2.01	5.32	4.08	3.32	1.79	0.98	1.0	3.52	5.01
Merged-chr10-81193271-1	chr10	81193171	81193371	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007828)	TTS (NM_007828)	-1420.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	4.44	0.5	4.56	1.61	4.5	11.92	1.99	4.93	9.05	3.51	2.51	4.07
Merged-chr7-28467576-1	chr7	28467476	28467676	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001141921)	TTS (NM_001141921)	15338.0	NM_001141921	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	2.83	8.3	4.56	2.01	5.73	5.33	2.66	6.06	3.74	5.02	8.54	3.45
Merged-chr16-23611647-1	chr16	23611547	23611747	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023386, intron 1 of 1)	RMER10B|LTR|ERVL	1728.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	4.04	4.53	1.71	4.83	0.0	6.9	1.33	4.6	4.13	1.0	0.0	2.51
Merged-chr5-140763421-1	chr5	140763321	140763521	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	ID_B1|SINE|B4	39294.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.42	4.02	1.71	4.83	6.55	4.39	1.99	3.95	6.88	6.03	2.01	1.88
Merged-chr17-7911164-1	chr17	7911064	7911264	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-14836.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	1.62	4.02	4.56	8.45	4.09	7.21	9.3	0.25	3.54	3.01	1.51	2.82
Merged-chr5-104039743-1	chr5	104039643	104039843	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7121.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	1.62	4.28	3.99	0.0	7.36	8.47	1.33	4.93	5.31	2.01	11.05	3.45
Merged-chr17-24167980-1	chr17	24167880	24168080	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361534, intron 1 of 3)	intron (NM_001361534, intron 1 of 3)	829.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	3.63	6.29	3.99	5.23	6.95	5.64	0.66	3.9	5.31	5.52	5.02	5.33
Merged-chr5-90413462-1	chr5	90413362	90413562	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	46465.0	NR_045618	791294.0	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	-	predicted gene 9958	ncRNA	4.04	1.76	10.27	0.0	4.5	5.96	3.99	3.14	8.85	4.02	4.52	3.76
Merged-chr1-121404825-1	chr1	121404725	121404925	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-26242.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.0	1.01	0.0	1.61	1.23	0.63	5.65	5.16	2.75	2.51	1.51	1.88
Merged-chr12-57281622-1	chr12	57281522	57281722	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51197.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	6.06	3.52	0.0	6.03	7.36	7.21	1.33	5.07	2.16	2.01	1.51	2.51
Merged-chrX-94636159-1	chrX	94636059	94636259	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008179)	promoter-TSS (NM_008179)	90.0	NM_008179	14853.0	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	2.02	1.26	5.13	2.01	2.45	4.7	6.64	4.99	2.75	0.0	0.5	2.19
Merged-chr8-94011195-1	chr8	94011095	94011295	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011787, intron 1 of 13)	intron (NM_011787, intron 1 of 13)	1445.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	2.42	1.76	1.14	4.02	5.32	6.27	1.33	4.46	3.34	4.52	5.02	2.51
Merged-chr5-64683574-1	chr5	64683474	64683674	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72875.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.23	3.52	3.99	6.84	3.27	3.14	6.64	4.63	4.33	2.51	4.52	1.25
Merged-chr2-112273645-1	chr2	112273545	112273745	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133649, intron 1 of 24)	B3A|SINE|B2	7331.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.81	0.5	0.0	1.21	1.64	3.14	11.29	7.77	1.57	1.0	1.51	1.25
Merged-chr10-75217984-1	chr10	75217884	75218084	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145826, intron 1 of 18)	ORR1B1|LTR|ERVL-MaLR	5594.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.04	4.02	7.99	3.22	3.27	5.64	2.66	5.94	11.8	6.53	6.03	6.58
Merged-chr5-103722748-2	chr5	103722646	103722846	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-31416.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.04	8.05	2.85	3.22	8.59	5.33	0.66	3.36	7.87	5.02	12.56	6.27
Merged-chr15-76230975-1	chr15	76230875	76231075	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	403.0	NM_001163542	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	3.23	5.03	1.14	0.8	2.45	10.66	2.33	4.15	5.31	5.02	7.03	5.64
Merged-chrX-19153837-1	chrX	19153737	19153937	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6866.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	1.62	2.01	3.99	3.62	9.0	6.59	2.33	4.01	3.34	4.52	4.02	0.31
Merged-chr10-99303100-1	chr10	99303000	99303200	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	39869.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.25	2.52	1.71	3.22	3.27	9.41	10.63	2.75	7.67	2.01	4.52	3.45
Merged-chr19-53534169-1	chr19	53534069	53534269	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	4851.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	4.44	3.52	2.85	0.8	1.64	5.02	3.32	3.93	3.54	3.01	1.51	3.76
Merged-chr8-122139986-1	chr8	122139886	122140086	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-142155.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.83	3.77	3.42	0.8	2.45	3.45	6.64	5.07	4.33	6.53	2.51	6.58
Merged-chr4-129036659-2	chr4	129036566	129036766	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21605.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.04	1.76	1.71	4.83	11.45	5.96	6.64	3.34	15.93	4.52	12.56	6.27
Merged-chr1-89196313-1	chr1	89196213	89196413	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	125898.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	1.62	7.55	0.0	10.46	0.82	2.51	1.99	1.32	4.33	0.0	1.0	1.25
Merged-chr12-25197441-1	chr12	25197341	25197541	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68267.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.81	4.02	5.7	3.22	5.32	10.03	1.0	5.66	6.49	5.52	3.52	6.89
Merged-chr7-47012867-1	chr7	47012767	47012967	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4453.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	3.63	5.79	3.99	5.63	2.45	6.9	6.64	3.84	9.44	8.03	10.05	1.88
Merged-chr11-72488946-1	chr11	72488846	72489046	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153060, intron 1 of 12)	CpG	974.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	1.21	3.27	2.28	4.02	5.73	4.08	3.32	7.26	5.31	1.0	9.04	5.33
Merged-chr9-95688299-1	chr9	95688199	95688399	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	50671.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	9.69	6.79	1.71	5.23	3.68	8.78	5.65	2.61	16.92	6.53	7.54	6.27
Merged-chr4-105252834-2	chr4	105252750	105252950	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95503.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.46	6.04	5.13	12.87	0.82	0.94	1.33	0.93	4.13	11.05	8.54	1.88
Merged-chr10-68442935-1	chr10	68442835	68443035	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	98940.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	3.23	1.51	7.99	5.63	5.73	5.64	5.31	4.49	7.47	9.54	6.03	4.7
Merged-chr16-4405555-1	chr16	4405455	4405655	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	14943.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.4	2.52	6.85	1.61	2.05	2.51	5.98	5.13	0.79	2.51	0.5	2.19
Merged-chr10-83533423-1	chr10	83533323	83533523	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153543, intron 1 of 22)	intron (NM_153543, intron 1 of 22)	717.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	6.46	5.53	6.85	2.82	4.09	5.02	2.99	6.93	3.74	7.53	3.52	5.01
Merged-chr18-36724938-1	chr18	36724838	36725038	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009841)	TTS (NM_009841)	1877.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.27	3.02	0.0	5.63	2.05	1.57	4.98	4.15	1.77	4.52	2.51	0.31
Merged-chr6-32996765-1	chr6	32996665	32996865	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63495.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	6.06	5.53	7.42	9.25	7.77	2.82	4.65	5.5	2.36	1.0	4.52	3.13
Merged-chr11-114791068-1	chr11	114790968	114791168	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001102615)	TTS (NM_001102615)	4824.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	7.67	6.04	2.28	4.42	2.86	0.94	1.0	2.72	3.74	7.03	7.03	2.19
Merged-chr15-40144364-1	chr15	40144264	40144464	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256056, intron 2 of 3)	intron (NM_001256056, intron 2 of 3)	9999.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	2.83	5.53	0.57	0.0	4.91	5.64	1.99	3.87	2.95	1.51	5.53	4.7
Merged-chr17-47526795-1	chr17	47526695	47526895	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	21744.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.81	2.26	2.28	2.41	1.64	1.25	4.65	7.12	4.92	2.51	2.01	2.51
Merged-chr10-7846088-1	chr10	7845988	7846188	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	9707.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.4	0.75	1.14	2.82	4.09	6.27	0.66	3.62	1.57	0.0	0.0	3.45
Merged-chr4-11126748-1	chr4	11126648	11126848	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_151526, exon 3 of 3)	non-coding (NR_151526, exon 3 of 3)	2790.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	9.69	4.53	7.99	8.85	2.45	5.96	10.3	3.14	6.88	8.54	5.53	5.64
Merged-chr17-35265415-1	chr17	35265315	35265515	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	2292.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	8.08	10.06	6.85	3.62	3.68	14.11	2.66	2.33	4.13	1.51	1.51	2.82
Merged-chr1-43444944-1	chr1	43444844	43445044	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	-807.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.04	1.51	0.0	0.8	3.27	2.82	5.98	7.79	8.06	9.54	2.51	3.13
Merged-chr1-159291109-1	chr1	159291009	159291209	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 11 of 19)	intron (NM_011931, intron 11 of 19)	-2664.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	4.85	4.28	9.13	5.63	3.27	4.39	1.99	5.36	8.85	2.51	10.55	11.59
Merged-chr6-121179195-3	chr6	121179090	121179290	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4477.0	NR_130903	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	6.86	7.55	7.42	4.02	9.41	6.27	5.31	4.07	9.83	13.05	9.04	7.21
Merged-chr7-135768430-1	chr7	135768330	135768530	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52051.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	8.08	7.55	11.41	7.24	9.82	12.86	6.31	6.39	16.33	18.08	9.55	7.21
Merged-chr3-56000440-1	chr3	56000340	56000540	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 24 of 57)	intron (NM_030595, intron 24 of 57)	153335.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	3.23	1.51	0.57	2.01	2.05	2.82	2.99	5.02	12.39	2.01	6.03	1.57
Merged-chr17-42915156-2	chr17	42915003	42915203	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-38679.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	2.83	7.55	4.56	0.4	3.27	4.08	5.98	4.85	10.03	3.01	3.52	4.07
Merged-chr3-121953778-1	chr3	121953678	121953878	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172525, intron 1 of 22)	CpG	549.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.23	7.55	5.7	5.63	2.45	4.7	4.32	3.28	4.52	3.01	4.52	5.95
Merged-chr7-142400249-1	chr7	142400149	142400349	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12379.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	2.42	6.54	7.99	4.42	1.64	0.31	4.65	1.68	5.11	5.02	1.0	5.95
Merged-chr16-20803373-1	chr16	20803273	20803473	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68862.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	2.02	7.29	7.42	4.02	1.64	0.94	5.65	5.75	2.16	2.51	5.53	3.13
Merged-chr11-106777152-1	chr11	106777052	106777252	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027785, exon 3 of 8)	non-coding (NR_027785, exon 3 of 8)	2314.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	7.67	4.28	0.57	4.02	3.27	7.21	3.65	4.88	5.7	5.02	1.51	7.52
Merged-chr19-5073818-1	chr19	5073718	5073918	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5740.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	4.04	2.01	2.28	4.83	0.82	0.94	4.98	2.55	12.78	3.51	5.02	7.21
Merged-chr1-91068035-1	chr1	91067935	91068135	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	14591.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.23	3.02	11.41	5.63	3.27	1.88	4.32	5.1	3.34	1.0	6.53	2.19
Merged-chr5-118606837-1	chr5	118606737	118606937	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	46118.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.46	4.53	5.7	2.01	3.27	1.88	5.65	5.05	1.57	3.01	2.51	1.25
Merged-chr1-43327307-1	chr1	43327207	43327407	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-118444.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.25	2.26	1.14	9.25	4.91	2.51	3.99	7.37	6.1	15.06	4.52	2.51
Merged-chr2-90582486-1	chr2	90582386	90582586	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1839.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.42	4.02	0.0	1.61	2.45	12.23	3.99	1.74	8.85	5.52	9.04	3.76
Merged-chr12-112562746-1	chr12	112562646	112562846	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-26038.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	4.04	5.03	11.41	7.64	6.95	5.33	4.32	5.8	4.52	5.02	12.56	4.07
Merged-chr15-99154713-1	chr15	99154613	99154813	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139140, intron 2 of 12)	RLTR45|LTR|ERVK	27868.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.02	1.51	1.71	0.4	3.68	4.08	2.99	1.54	6.69	2.51	4.02	4.7
Merged-chr5-120130393-1	chr5	120130293	120130493	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028762, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	8870.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	2.83	2.01	2.28	0.0	9.82	6.9	1.99	3.2	6.69	5.52	4.52	4.39
Merged-chr2-152615732-1	chr2	152615632	152615832	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	7321.0	NM_001039122	654459.0	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|mBD-25	defensin beta 25	protein-coding	4.44	3.52	3.42	1.61	4.91	2.51	2.99	4.57	7.08	9.04	6.53	5.64
Merged-chr5-20257327-1	chr5	20257227	20257427	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349809.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.81	4.02	2.28	0.4	6.14	4.39	3.65	3.93	0.39	1.0	1.51	2.82
Merged-chr6-137475366-1	chr6	137475266	137475466	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	44529.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.25	7.8	8.56	10.46	1.64	0.0	0.33	0.62	0.2	1.0	1.0	0.63
Merged-chr1-171681205-1	chr1	171681105	171681305	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360767)	promoter-TSS (NM_001360767)	-787.0	NM_007649	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	8.88	3.27	4.56	9.65	11.45	7.21	2.66	4.37	8.85	5.52	7.03	4.39
Merged-chr3-31135465-1	chr3	31135365	31135565	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14455.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	1.62	4.02	1.71	0.8	5.32	2.51	1.33	1.96	4.52	5.02	4.52	4.39
Merged-chr14-51262595-1	chr14	51262495	51262695	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-6483.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	10.5	3.52	9.13	7.24	4.91	3.14	8.3	3.36	9.83	2.01	18.59	5.64
Merged-chr16-93839296-1	chr16	93839196	93839396	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	RMER6D|LTR|ERVK	7175.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.81	0.75	1.14	0.4	0.41	0.94	0.0	1.37	3.34	1.51	1.51	5.64
Merged-chrX-77511472-1	chrX	77511372	77511572	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	CpG	245.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	8.08	3.52	9.7	2.01	7.36	3.76	2.33	4.21	6.88	7.53	11.05	5.01
Merged-chr15-31648157-1	chr15	31648057	31648257	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	46041.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.81	1.51	0.57	0.0	3.27	4.39	3.32	3.42	1.77	2.01	0.5	0.0
Merged-chr4-107084410-1	chr4	107084310	107084510	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175471, exon 9 of 9)	3' UTR (NM_175471, exon 9 of 9)	-12481.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	5.65	6.29	1.14	2.01	5.73	9.72	3.99	5.27	0.39	2.01	8.54	0.94
Merged-chr7-29998276-2	chr7	29998181	29998381	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	14326.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	7.67	5.79	2.28	5.23	6.55	6.27	0.66	6.7	7.87	4.52	7.03	2.19
Merged-chr11-54788461-1	chr11	54788361	54788561	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-758.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.63	5.03	2.28	1.61	6.14	5.64	1.66	5.72	10.62	3.01	5.02	0.63
Merged-chr13-34643147-2	chr13	34643039	34643239	+	594.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	9542.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	3.23	5.53	3.42	7.24	7.36	10.03	1.33	7.51	12.78	12.05	5.02	8.14
Merged-chr18-77869750-2	chr18	77869623	77869823	+	594.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-68744.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.25	8.05	11.41	2.82	8.18	8.47	3.65	5.5	6.1	3.51	6.03	3.76
Merged-chr13-78210922-2	chr13	78210835	78211035	+	594.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12062.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	5.25	8.05	9.7	6.44	5.32	4.08	5.31	4.96	4.92	2.01	2.01	5.95
Merged-chr4-107164216-2	chr4	107164126	107164326	+	594.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025617, intron 3 of 4)	intron (NM_025617, intron 3 of 4)	14140.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	8.88	3.52	1.14	6.03	6.95	5.64	1.33	5.16	11.01	2.51	6.53	7.21
Merged-chr13-101736302-3	chr13	101736168	101736368	+	594.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	ID|SINE|ID	31949.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.25	9.31	0.0	4.83	9.0	2.2	7.31	3.7	9.24	9.54	6.03	4.39
Merged-chr6-116726348-1	chr6	116726248	116726448	+	594.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57E1|LTR|ERV1	-9590.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	7.27	4.28	0.0	2.82	8.59	7.53	4.65	4.51	10.62	2.51	6.03	1.57
Merged-chr6-134432783-1	chr6	134432683	134432883	+	594.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	18355.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.02	2.26	2.28	2.41	7.36	4.39	6.31	4.09	2.95	3.01	5.02	1.25
Merged-chr10-80757932-2	chr10	80757847	80758047	+	594.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	2744.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	7.67	5.79	5.7	4.02	7.36	8.78	0.33	1.79	9.64	10.54	11.56	10.65
Merged-chr17-35186862-2	chr17	35186739	35186939	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010734, intron 2 of 3)	intron (NM_010734, intron 2 of 3)	1601.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	10.09	5.53	4.56	3.22	9.41	9.41	3.65	1.32	9.05	8.54	4.02	2.51
Merged-chr19-5812212-2	chr19	5812088	5812288	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9516.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	9.69	5.79	2.28	0.0	7.36	8.47	4.32	3.56	9.64	5.02	5.02	2.19
Merged-chr2-90547503-2	chr2	90547402	90547602	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	33145.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.04	5.53	5.7	3.62	0.82	6.59	2.33	5.3	9.83	13.56	8.04	8.14
Merged-chr11-109860286-2	chr11	109860163	109860363	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14385.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	8.48	6.79	5.13	8.85	2.45	1.57	2.33	2.16	7.67	10.04	7.54	7.21
Merged-chr14-70766127-1	chr14	70766027	70766227	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023045, intron 1 of 27)	CpG	501.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	4.04	1.01	2.28	4.02	11.05	7.21	4.98	3.42	5.11	9.54	7.54	3.45
Merged-chr4-133154226-1	chr4	133154126	133154326	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	23593.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.65	6.79	10.27	3.22	4.5	4.7	3.32	7.74	8.06	6.03	4.02	5.33
Merged-chr12-75638522-1	chr12	75638422	75638622	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	Lx7|LINE|L1	-6773.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	5.25	4.28	5.7	6.84	5.32	4.08	4.98	5.86	9.64	2.51	15.58	4.7
Merged-chr8-119439026-2	chr8	119438951	119439151	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1889.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	4.85	7.8	7.42	0.4	3.68	5.02	2.33	5.41	13.77	5.52	3.52	5.01
Merged-chr17-50581363-2	chr17	50581263	50581463	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	71816.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.85	7.55	13.69	0.8	10.23	7.53	2.33	4.12	7.47	7.03	0.0	1.57
Merged-chr8-85517461-1	chr8	85517361	85517561	+	594.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24844.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	1.01	2.28	0.0	1.23	2.51	0.66	0.0	8.46	5.02	9.55	5.64
Merged-chr3-137820947-1	chr3	137820847	137821047	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37332.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	2.02	0.5	3.99	4.42	9.82	4.7	5.31	3.7	7.67	14.56	5.53	4.7
Merged-chr7-47146523-2	chr7	47146422	47146622	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12838.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	6.06	7.8	3.42	16.89	4.5	5.64	3.99	8.27	3.34	8.54	6.53	5.33
Merged-chr4-133424321-2	chr4	133424226	133424426	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001358455)	TTS (NM_001358455)	54550.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	7.67	5.79	4.56	1.61	2.45	5.64	2.66	4.65	4.33	12.55	7.54	1.88
Merged-chr18-75599194-2	chr18	75599094	75599294	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	84549.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	2.83	2.01	2.85	1.61	4.91	5.33	5.31	4.68	13.77	13.05	9.55	3.45
Merged-chr13-56168056-1	chr13	56167956	56168156	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10829.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.23	1.26	3.99	4.83	5.73	3.45	6.98	4.96	7.28	8.54	6.03	5.95
Merged-chr13-48998773-1	chr13	48998673	48998873	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30661.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	3.63	10.06	0.57	4.02	5.73	2.2	5.31	4.12	12.19	3.01	6.03	2.19
Merged-chr18-50138644-1	chr18	50138544	50138744	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008292, intron 2 of 23)	L1MB1|LINE|L1	10443.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	10.5	1.51	3.42	3.22	6.55	5.33	3.32	6.0	3.54	1.0	4.02	2.82
Merged-chr13-56165737-2	chr13	56165628	56165828	+	594.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	13157.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	9.69	6.04	10.84	8.45	4.09	5.33	3.99	5.94	4.92	7.53	13.06	1.88
Merged-chr16-38506242-2	chr16	38506150	38506350	+	594.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024273, intron 4 of 6)	intron (NM_024273, intron 4 of 6)	16413.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	17.77	9.56	5.13	3.22	10.64	4.7	4.65	4.32	9.24	7.53	12.56	4.7
Merged-chr4-33148056-1	chr4	33147956	33148156	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008075, intron 2 of 9)	B3|SINE|B2	15500.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	4.85	7.55	9.13	2.01	6.55	6.9	2.99	5.72	9.24	11.55	7.03	3.76
Merged-chr3-19895590-1	chr3	19895490	19895690	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027985, exon 1 of 1)	non-coding (NR_027985, exon 1 of 1)	719.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	7.67	3.77	2.28	3.22	3.68	7.53	11.29	5.75	6.1	4.02	5.02	0.63
Merged-chr6-125596399-1	chr6	125596299	125596499	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 10 of 51)	CT-rich|Low_complexity|Low_complexity	43451.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.81	3.77	0.57	2.41	5.73	6.59	5.31	5.27	6.69	7.03	9.55	2.19
Merged-chr11-116625795-1	chr11	116625695	116625895	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1224.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	8.88	5.53	11.98	2.41	6.95	11.29	3.65	4.63	8.46	8.03	5.02	6.58
Merged-chr9-65630931-1	chr9	65630831	65631031	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028030, intron 1 of 7)	CpG	349.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	5.65	5.28	7.99	4.42	1.64	6.59	2.33	4.93	10.23	4.52	7.54	4.39
Merged-chr10-93191165-1	chr10	93191065	93191265	+	594.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	28380.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.0	1.26	0.0	0.0	0.82	0.31	0.33	0.28	9.24	8.54	12.56	8.14
Merged-chr17-29049302-3	chr17	29049203	29049403	+	594.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16643.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	7.67	8.3	12.55	3.22	2.86	5.02	3.99	4.37	8.85	9.04	10.05	4.7
Merged-chr4-154939184-2	chr4	154939083	154939283	+	594.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11106.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	1.21	6.29	3.99	8.04	8.59	5.64	5.31	4.18	7.08	7.53	4.02	8.77
Merged-chr11-111282501-2	chr11	111282401	111282601	+	594.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	216337.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	7.27	1.76	3.99	3.22	4.09	6.27	4.32	4.63	11.6	6.03	11.05	6.58
Merged-chr2-84488100-1	chr2	84488000	84488200	+	594.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-11325.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.42	1.51	1.71	3.22	2.05	0.94	2.66	2.27	6.1	11.05	9.55	10.65
Merged-chr11-70598747-2	chr11	70598661	70598861	+	594.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-17133.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	9.29	8.55	3.42	15.28	7.36	7.84	3.99	4.01	11.41	3.51	0.0	0.63
Merged-chr16-93938665-3	chr16	93938582	93938782	+	594.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019500, intron 2 of 2)	intron (NM_019500, intron 2 of 2)	-8865.0	NM_001165926	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	3.63	7.29	3.42	9.65	5.73	10.03	5.98	5.58	10.42	5.52	11.05	5.64
Merged-chr1-94532955-1	chr1	94532855	94533055	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-264487.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	2.42	0.0	0.0	0.8	0.82	3.14	5.65	4.77	2.75	8.03	5.02	0.31
Merged-chr7-5054103-1	chr7	5054003	5054203	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026900)	TTS (NM_026900)	-2049.0	NM_001290429	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	5.25	6.29	3.42	9.25	4.91	5.33	1.0	7.79	3.74	5.02	5.53	2.19
Merged-chr2-104574278-1	chr2	104574178	104574378	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	14819.0	NR_040323	74959.0	Mm.417819	NR_040322	ENSMUSG00000086454	Platr14	4930500J02Rik	pluripotency associated transcript 14	ncRNA	3.23	5.53	2.28	4.42	5.73	9.72	0.0	6.11	5.11	9.54	10.05	2.51
Merged-chr7-130709649-1	chr7	130709549	130709749	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021314, intron 1 of 17)	intron (NM_021314, intron 1 of 17)	17093.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	3.02	9.13	0.8	0.0	1.88	7.97	5.3	6.69	5.52	13.57	3.13
Merged-chr5-148499732-1	chr5	148499632	148499832	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51941.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.81	4.02	2.28	4.83	5.32	5.33	2.66	3.76	5.31	2.51	12.06	2.51
Merged-chr7-104206351-1	chr7	104206251	104206451	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12444.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	6.46	0.0	2.85	1.61	2.45	2.82	3.99	4.82	7.67	4.02	10.55	4.39
Merged-chr11-79030790-1	chr11	79030690	79030890	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045873, intron 4 of 5)	intron (NR_045873, intron 4 of 5)	7193.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	6.46	6.04	1.14	8.85	7.36	6.9	2.33	5.21	5.11	6.03	9.04	10.96
Merged-chr2-26238193-1	chr2	26238093	26238293	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	-794.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	1.62	0.5	0.0	7.24	5.73	4.39	3.99	4.91	7.47	5.02	6.03	4.39
Merged-chr19-17397016-1	chr19	17396916	17397116	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019437, intron 2 of 3)	intron (NM_019437, intron 2 of 3)	2973.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	7.27	1.51	3.99	3.62	3.68	4.08	1.0	6.17	2.16	4.52	5.02	5.64
Merged-chr8-84071944-1	chr8	84071844	84072044	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	5108.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	2.83	1.26	4.56	2.01	11.86	5.96	5.31	4.18	7.28	3.51	8.04	8.77
Merged-chr2-73206171-1	chr2	73206071	73206271	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030091, intron 2 of 7)	intron (NM_030091, intron 2 of 7)	8276.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	2.42	3.02	1.71	0.4	4.5	6.9	5.31	7.07	6.88	6.03	8.04	6.27
Merged-chrX-106184426-1	chrX	106184326	106184526	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-2674.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	2.83	0.5	1.14	4.02	1.64	4.7	4.65	4.93	2.16	1.51	4.02	2.19
Merged-chr8-46072237-1	chr8	46072137	46072337	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207213, intron 5 of 17)	MTD|LTR|ERVL-MaLR	51909.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.23	5.79	6.85	5.63	5.73	5.64	5.65	6.56	2.56	8.03	6.53	6.58
Merged-chr1-171257381-1	chr1	171257281	171257481	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172845, intron 7 of 8)	intron (NM_172845, intron 7 of 8)	7252.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	4.04	2.52	0.0	1.61	2.05	13.48	1.66	5.64	2.16	1.51	2.51	1.25
Merged-chr13-105054998-1	chr13	105054898	105055098	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-68.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	5.25	4.28	0.0	4.02	6.55	3.45	4.98	6.42	7.28	6.03	2.01	4.39
Merged-chr7-44300136-1	chr7	44300036	44300236	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6823.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	1.62	2.01	1.14	0.0	0.0	0.0	0.0	0.62	9.64	4.02	11.05	9.08
Merged-chr2-29670366-2	chr2	29670269	29670469	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	B3A|SINE|B2	50649.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.65	3.77	7.99	1.61	5.73	6.9	1.0	6.48	9.83	4.52	9.55	10.96
Merged-chr11-49829631-1	chr11	49829531	49829731	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013529, intron 15 of 18)	intron (NM_013529, intron 15 of 18)	-17120.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	2.42	5.53	3.99	6.44	6.95	0.94	1.66	5.33	6.49	1.51	2.01	3.76
Merged-chr3-8962835-1	chr3	8962735	8962935	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1311.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.83	3.52	8.56	5.23	4.09	6.9	7.64	5.78	5.7	1.51	11.56	5.33
Merged-chr2-24347703-1	chr2	24347603	24347803	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039701, intron 2 of 3)	intron (NM_001039701, intron 2 of 3)	2332.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	2.42	7.55	5.7	0.0	3.27	8.47	1.66	2.8	9.83	8.03	8.54	1.88
Merged-chr13-21441109-2	chr13	21441008	21441208	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162919)	promoter-TSS (NM_001162919)	-55.0	NM_001162920	319207.0	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	1.62	2.26	5.7	4.42	6.55	2.51	3.65	5.1	7.08	2.01	9.04	5.01
Merged-chr11-11687836-2	chr11	11687720	11687920	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	1895.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	5.25	2.01	2.85	6.84	4.09	6.27	3.65	4.82	14.16	4.02	4.02	6.58
Merged-chr13-97859154-1	chr13	97859054	97859254	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108042.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	2.83	7.8	2.28	3.22	1.64	0.0	1.66	3.0	8.85	7.53	13.06	4.39
Merged-chr16-22046140-1	chr16	22046040	22046240	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027488, intron 16 of 16)	PB1D10|SINE|Alu	36656.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	3.63	3.52	1.14	5.63	4.91	4.39	2.66	8.83	4.92	2.51	7.54	3.76
Merged-chr8-3313591-1	chr8	3313491	3313691	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-33974.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.04	5.79	9.7	10.86	6.14	3.76	2.66	7.04	9.05	4.02	6.03	3.45
Merged-chr4-88302466-1	chr4	88302366	88302566	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081184, intron 19 of 43)	intron (NM_001081184, intron 19 of 43)	136460.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.86	4.53	10.27	13.27	4.09	4.08	3.32	3.87	2.56	3.51	6.03	1.57
Merged-chr18-55040590-1	chr18	55040490	55040690	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47999.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.23	2.77	0.0	2.01	2.45	0.94	3.32	4.63	1.77	2.01	2.51	0.63
Merged-chr13-45414278-1	chr13	45414178	45414378	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	24536.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	9.69	14.34	1.14	3.22	8.59	23.83	2.33	3.2	11.01	7.53	2.01	0.94
Merged-chr3-90271671-1	chr3	90271571	90271771	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_201407, exon 12 of 28)	exon (NM_201407, exon 12 of 28)	1522.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	1.62	1.01	0.0	4.02	5.73	0.63	5.31	4.18	5.51	1.0	3.01	0.94
Merged-chr8-26681317-2	chr8	26681201	26681401	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143122.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.46	2.26	3.99	4.83	4.91	3.76	7.64	5.19	7.47	4.02	8.04	7.21
Merged-chr18-53905859-2	chr18	53905759	53905959	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 3 of 12)	MIR|SINE|MIR	43746.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	8.88	4.78	2.28	14.48	4.09	6.9	2.66	8.94	9.05	8.03	8.04	4.07
Merged-chr1-184700905-1	chr1	184700805	184701005	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11592.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	2.83	0.5	2.28	2.01	3.68	0.31	5.65	4.99	1.97	1.0	0.5	3.45
Merged-chr4-132571343-1	chr4	132571243	132571443	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7276.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.81	0.75	0.0	0.8	5.73	3.14	3.65	6.17	5.31	3.51	3.01	5.33
Merged-chr9-124079960-1	chr9	124079860	124080060	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22223.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	8.08	5.28	3.42	1.61	8.18	12.54	1.99	5.07	8.46	6.53	1.51	5.01
Merged-chr17-13877554-1	chr17	13877454	13877654	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-70819.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	1.62	4.53	5.13	4.42	3.27	6.9	4.98	4.26	1.57	2.51	9.04	3.76
Merged-chr6-72426238-1	chr6	72426138	72426338	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019802, intron 7 of 14)	ID_B1|SINE|B4	11930.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	3.63	3.27	0.0	0.0	1.64	2.2	0.33	0.31	0.2	1.51	2.51	2.19
Merged-chr13-74001307-1	chr13	74001207	74001407	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8112.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	7.67	2.26	2.28	2.82	6.14	0.94	3.65	4.46	2.36	3.01	5.02	1.25
Merged-chr13-94262119-1	chr13	94262019	94262219	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	23162.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	3.27	15.4	10.86	4.09	7.53	4.32	2.94	5.7	6.53	3.01	0.94
Merged-chr1-132791410-1	chr1	132791310	132791510	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-49613.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.4	0.0	0.57	0.0	1.23	0.0	5.65	9.31	0.0	0.0	0.5	1.57
Merged-chr5-64626547-1	chr5	64626447	64626647	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15848.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	5.25	5.79	8.56	2.82	7.77	7.84	1.0	5.16	6.29	6.53	11.05	4.39
Merged-chr19-56599021-1	chr19	56598921	56599121	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025811)	TTS (NM_025811)	50760.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	2.42	2.01	2.85	4.42	0.82	5.64	2.99	4.09	1.18	1.51	1.0	1.57
Merged-chr12-100185198-1	chr12	100185098	100185298	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2770.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	4.85	5.79	5.7	4.42	3.27	11.29	3.32	0.87	17.9	8.54	12.06	8.77
Merged-chr19-28664030-1	chr19	28663930	28664130	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-14194.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.81	0.75	3.42	1.61	6.95	4.7	5.98	4.63	3.15	1.51	7.54	2.51
Merged-chr12-35288300-1	chr12	35288200	35288400	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-93403.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0.0	1.26	2.28	2.41	2.45	8.15	2.33	4.07	2.16	4.02	6.53	0.31
Merged-chr7-45519331-1	chr7	45519231	45519431	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290996, intron 5 of 10)	intron (NM_001290996, intron 5 of 10)	4729.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	6.86	6.04	1.71	0.0	0.82	2.51	0.33	1.93	1.38	6.03	2.01	2.51
Merged-chrX-50619779-1	chrX	50619679	50619879	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015505, intron 3 of 19)	intron (NR_015505, intron 3 of 19)	15542.0	NR_015505	103012.0	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	0.0	0.25	2.28	1.61	1.23	5.64	1.99	4.63	1.18	0.5	0.0	0.31
Merged-chr10-49051055-1	chr10	49050955	49051155	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	736882.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	2.01	0.0	0.8	7.77	7.84	2.66	0.81	2.75	3.01	0.5	0.63
Merged-chr5-142385461-1	chr5	142385361	142385561	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16036.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	4.85	1.51	3.42	3.22	4.5	1.25	2.66	3.79	2.75	3.51	5.53	1.57
Merged-chr4-129134941-1	chr4	129134841	129135041	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2058.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	3.23	3.27	1.71	5.23	4.09	2.51	1.33	2.86	7.08	6.53	4.52	4.7
Merged-chr11-97840671-1	chr11	97840571	97840771	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080935)	promoter-TSS (NM_001080935)	-109.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.02	1.76	1.71	3.22	4.5	6.27	1.66	3.06	10.23	4.52	8.54	3.45
Merged-chr10-98796987-1	chr10	98796887	98797087	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117655.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	2.83	1.26	1.71	2.41	6.14	5.96	1.0	3.7	4.33	4.52	2.51	1.25
Merged-chr1-176248284-1	chr1	176248184	176248384	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	27028.0	NM_001357846	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	4.04	3.52	0.0	1.61	5.32	5.02	2.99	5.44	2.95	1.0	1.51	0.94
Merged-chr3-122943788-1	chr3	122943688	122943888	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	19391.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	10.09	7.04	2.28	12.07	6.14	11.6	7.64	2.66	4.72	14.06	8.04	2.51
Merged-chr5-120906953-2	chr5	120906839	120907039	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145211, intron 1 of 6)	intron (NM_145211, intron 1 of 6)	586.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	6.46	3.77	2.28	2.41	5.32	7.84	5.31	4.35	5.51	12.05	4.02	7.21
Merged-chr7-81295445-1	chr7	81295345	81295545	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 5 of 21)	intron (NM_008803, intron 5 of 21)	49789.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	2.83	1.76	5.7	0.4	2.86	1.25	1.66	3.64	6.88	2.01	8.54	3.13
Merged-chr7-101559645-2	chr7	101559530	101559730	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033804, intron 1 of 3)	ID4_|SINE|ID	1235.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.65	5.28	6.85	1.21	4.09	3.14	0.0	5.13	8.26	8.03	12.56	6.27
Merged-chr11-106673141-1	chr11	106673041	106673241	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	42140.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	7.27	0.0	7.42	1.61	3.27	2.82	4.32	4.51	1.18	4.02	4.52	4.07
Merged-chr14-70470390-1	chr14	70470290	70470490	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12873.0	NM_145981	105653.0	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	5.65	3.77	1.14	3.62	3.27	6.59	2.66	3.95	6.1	6.03	4.02	2.19
Merged-chr11-97072752-1	chr11	97072652	97072852	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8984.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	7.27	5.28	3.42	5.23	1.64	4.39	1.33	1.96	4.72	4.52	2.01	2.82
Merged-chr4-139616325-1	chr4	139616225	139616425	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205173, intron 8 of 8)	intron (NM_001205173, intron 8 of 8)	-6569.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.23	4.53	2.28	4.02	7.36	6.59	1.33	3.5	5.7	3.51	4.52	4.07
Merged-chr11-32231320-1	chr11	32231220	32231420	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_104306)	TTS (NR_104306)	4815.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	4.44	4.78	1.14	3.22	2.05	4.39	0.66	5.1	1.57	4.02	7.03	1.25
Merged-chr10-18917579-1	chr10	18917479	18917679	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72508.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.0	0.5	3.42	2.41	7.77	7.21	4.98	2.75	5.31	1.51	5.02	5.01
Merged-chr6-113075512-2	chr6	113075413	113075613	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027009, intron 1 of 1)	intron (NR_027009, intron 1 of 1)	1731.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	6.06	4.28	6.85	1.21	6.95	6.59	1.0	4.71	6.69	15.06	10.55	6.58
Merged-chr18-32473248-1	chr18	32473148	32473348	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	86786.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	2.83	1.76	1.14	0.0	1.64	9.41	1.66	4.85	3.74	5.02	5.53	5.95
Merged-chr11-62466770-1	chr11	62466670	62466870	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039536, intron 1 of 6)	intron (NM_001039536, intron 1 of 6)	8310.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	6.86	4.02	1.71	2.82	7.36	10.35	1.33	2.97	4.72	5.02	9.55	2.51
Merged-chr1-139015300-1	chr1	139015200	139015400	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	37643.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	6.06	3.52	2.28	2.01	2.86	4.7	5.31	5.21	4.52	0.5	6.03	1.57
Merged-chr13-63633658-1	chr13	63633558	63633758	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-60198.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.81	2.52	0.0	1.21	0.0	3.14	0.66	0.73	4.52	2.01	15.07	7.52
Merged-chr19-11121266-2	chr19	11121162	11121362	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027058, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	9616.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	9.29	3.27	9.13	10.05	9.82	5.96	8.97	2.75	5.7	10.04	3.52	5.95
Merged-chr5-122371911-1	chr5	122371811	122372011	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	52.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	6.46	4.28	2.28	4.83	7.36	4.39	5.31	6.62	12.39	12.05	8.54	5.95
Merged-chr14-50904096-1	chr14	50903996	50904196	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10841.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.4	0.0	0.0	0.0	0.0	0.0	0.0	0.39	6.29	6.53	11.56	7.52
Merged-chr7-141363608-2	chr7	141363503	141363703	+	593.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133191)	TTS (NM_133191)	1507.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	12.11	7.8	4.56	2.82	6.14	5.64	6.64	3.22	6.49	10.54	12.06	8.14
Merged-chr4-129817959-2	chr4	129817831	129818031	+	593.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2548.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.06	5.28	0.0	1.21	4.5	6.59	10.63	3.76	6.29	6.53	7.03	2.51
Merged-chr11-97243161-1	chr11	97243061	97243261	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	37415.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	4.85	4.53	8.56	4.83	8.59	8.15	1.33	4.43	9.24	6.03	7.54	8.77
Merged-chr4-141762406-1	chr4	141762306	141762506	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	15731.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	2.83	2.77	3.99	0.4	6.14	2.82	1.0	6.59	3.93	2.01	1.51	3.13
Merged-chr19-42156397-1	chr19	42156297	42156497	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	9008.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	7.27	6.79	4.56	6.03	5.73	5.33	5.31	5.58	4.92	1.0	9.04	3.76
Merged-chr2-165288628-1	chr2	165288528	165288728	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	-790.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	3.23	4.28	1.14	6.44	6.55	6.9	3.65	5.41	4.92	6.03	6.03	3.45
Merged-chr6-90740862-2	chr6	90740749	90740949	+	593.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-24320.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	1.62	3.02	7.42	3.22	9.0	5.02	3.32	6.03	6.49	1.51	10.55	7.83
Merged-chr7-92848454-2	chr7	92848356	92848556	+	593.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	25791.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	5.25	5.28	15.4	2.01	11.05	3.14	6.64	4.96	8.46	6.53	12.06	6.89
Merged-chr6-17286591-1	chr6	17286491	17286691	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	5406.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	4.85	4.28	0.0	5.63	7.36	3.45	5.65	3.98	5.31	8.03	3.52	1.57
Merged-chr10-88678207-1	chr10	88678107	88678307	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011461, intron 4 of 5)	B1_Mur4|SINE|Alu	4816.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	2.02	3.77	1.14	4.02	7.77	9.09	2.99	5.19	3.15	1.51	4.52	2.82
Merged-chr2-103495811-2	chr2	103495705	103495905	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10652.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	2.83	2.01	4.56	8.04	1.64	5.64	1.0	6.0	10.82	5.02	14.57	5.01
Merged-chr10-67247361-1	chr10	67247261	67247461	+	593.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 22 of 25)	B3|SINE|B2	37920.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	8.48	1.76	8.56	1.21	7.36	3.45	3.32	1.35	20.85	9.54	10.55	3.13
Merged-chr7-102314287-2	chr7	102314189	102314389	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	46465.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	2.42	8.05	9.13	8.45	4.91	5.64	2.33	8.05	11.01	4.52	8.54	3.45
Merged-chr2-165901253-2	chr2	165901149	165901349	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-16411.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.46	8.55	9.13	4.83	4.09	1.25	7.97	4.77	9.83	8.03	7.54	15.98
Merged-chr11-87736840-2	chr11	87736730	87736930	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-721.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	6.86	6.04	1.14	4.42	17.59	5.33	1.66	3.64	6.49	15.06	4.02	6.58
Merged-chr1-173366168-2	chr1	173366033	173366233	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	1562.0	NM_053199	94332.0	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	2.42	5.03	5.13	3.62	4.5	6.27	3.32	0.79	10.62	3.51	7.54	6.27
Merged-chr9-107710386-1	chr9	107710286	107710486	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	89.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	5.25	4.78	5.13	2.41	3.68	8.15	6.64	5.66	7.08	8.03	9.55	5.95
Merged-chr7-118849123-1	chr7	118849023	118849223	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	6490.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.04	7.55	5.7	5.23	8.59	6.9	4.65	5.89	8.65	3.51	5.53	1.88
Merged-chr16-95658991-2	chr16	95658889	95659089	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43418.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.44	3.27	3.42	1.21	7.36	2.82	2.99	5.27	9.05	9.54	8.54	4.7
Merged-chr9-66706010-2	chr9	66705911	66706111	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7675.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	5.65	7.8	7.99	7.24	6.55	5.64	2.33	5.83	9.05	5.52	2.51	2.19
Merged-chr8-12677731-2	chr8	12677621	12677821	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5621.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	1.62	2.01	6.85	2.82	4.91	9.09	3.99	4.21	7.47	11.05	15.07	6.89
Merged-chr4-138980954-2	chr4	138980841	138981041	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029857, intron 2 of 16)	ORR1F|LTR|ERVL-MaLR	8036.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	2.83	6.54	2.28	7.64	0.0	0.0	0.66	0.03	10.62	4.02	7.54	7.21
Merged-chr1-23827263-1	chr1	23827163	23827363	+	593.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172124, intron 2 of 3)	intron (NM_172124, intron 2 of 3)	65337.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	4.44	3.27	3.99	1.61	1.64	3.14	1.0	3.56	9.83	8.03	12.06	4.39
Merged-chr4-114863419-1	chr4	114863319	114863519	+	593.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41699.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	3.63	2.52	0.0	3.62	3.27	2.51	1.66	3.36	7.08	6.03	6.03	6.27
Merged-chr19-32788916-1	chr19	32788816	32789016	+	593.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	31339.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.88	3.02	0.57	4.83	9.0	5.64	3.65	5.94	3.54	3.51	5.53	3.76
Merged-chr3-126667470-3	chr3	126667371	126667571	+	593.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	70520.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.42	10.82	3.42	7.64	3.68	4.7	2.99	3.56	8.26	7.03	2.51	5.01
Merged-chr2-131492832-1	chr2	131492732	131492932	+	593.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	970.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.04	7.29	0.57	4.42	7.36	4.7	4.98	5.36	3.15	2.51	8.04	3.45
Merged-chr2-166116156-1	chr2	166116056	166116256	+	593.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	39129.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.44	3.52	5.7	0.8	2.05	1.57	1.66	2.33	12.98	8.54	10.05	5.64
Merged-chr1-156465002-1	chr1	156464902	156465102	+	593.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	9326.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.02	1.26	2.28	3.22	6.14	4.7	4.32	6.42	0.79	1.0	1.0	0.63
Merged-chr1-55809377-1	chr1	55809277	55809477	+	593.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121864.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.83	4.28	6.28	12.07	0.41	3.14	2.33	3.93	9.83	11.55	8.04	10.65
Merged-chr11-67636644-2	chr11	67636486	67636686	+	593.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	40031.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	12.52	3.02	6.85	5.23	5.32	2.2	2.33	4.63	5.31	5.52	6.53	4.7
Merged-chr8-41368260-3	chr8	41368148	41368348	+	593.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	6449.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	7.67	6.79	14.83	8.45	6.14	1.88	4.65	4.54	8.26	4.52	7.54	5.95
Merged-chr3-88592151-3	chr3	88592037	88592237	+	593.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	12529.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	10.9	6.29	9.13	4.02	4.09	7.84	2.66	5.07	12.78	7.53	9.55	4.39
Merged-chr3-8778900-2	chr3	8778830	8779030	+	593.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111892.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.42	1.76	7.99	2.41	8.18	4.7	4.65	5.27	2.95	1.51	11.56	8.46
Merged-chr10-61474495-2	chr10	61474387	61474587	+	593.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1346.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	4.85	4.02	5.7	3.22	6.55	11.29	4.32	4.4	11.8	8.03	8.54	12.84
Merged-chr6-125328455-2	chr6	125328350	125328550	+	593.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	7110.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	2.42	3.52	1.71	7.24	11.86	8.15	12.62	4.26	9.05	11.55	10.55	10.65
Merged-chr17-8214140-1	chr17	8214040	8214240	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21903.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	5.65	0.5	7.99	5.63	4.91	5.02	6.31	4.18	5.11	1.51	2.51	3.45
Merged-chr19-34726479-1	chr19	34726379	34726579	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 1 of 6)	L1MB3|LINE|L1	20632.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	2.42	1.51	1.14	8.45	6.95	0.94	6.31	7.18	6.49	6.03	5.53	2.51
Merged-chr10-94991804-1	chr10	94991704	94991904	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47226.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	1.21	3.02	0.57	2.41	2.05	4.7	3.99	4.49	3.74	1.51	1.0	4.7
Merged-chr2-157134700-1	chr2	157134600	157134800	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	CpG	522.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	9.69	7.04	11.98	6.44	6.14	6.9	5.31	5.8	5.11	4.02	6.53	4.39
Merged-chr10-23797139-1	chr10	23797039	23797239	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001358812, exon 1 of 14)	5' UTR (NM_001358812, exon 1 of 14)	153.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	2.83	9.06	1.14	3.62	3.27	2.51	3.99	5.69	3.34	4.02	3.52	5.95
Merged-chr14-32939367-1	chr14	32939267	32939467	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001361602, exon 6 of 6)	3' UTR (NM_001361602, exon 6 of 6)	-52015.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	2.83	4.53	2.85	5.23	4.91	4.7	5.98	4.79	0.39	2.51	5.53	0.94
Merged-chrX-108816116-1	chrX	108816016	108816216	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081477, intron 6 of 40)	intron (NM_001081477, intron 6 of 40)	18239.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	2.42	3.77	3.42	4.83	6.55	0.94	3.99	8.55	7.28	5.02	4.02	5.64
Merged-chr11-94073486-2	chr11	94073400	94073600	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025430, intron 5 of 25)	B3|SINE|B2	29295.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.42	1.01	0.0	1.21	6.55	6.9	2.33	3.56	14.16	9.04	8.54	7.21
Merged-chr18-37741966-1	chr18	37741866	37742066	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033578)	promoter-TSS (NM_033578)	-128.0	NM_033578	93703.0	Mm.247203	NM_033578	ENSMUSG00000103088	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding	6.46	4.28	6.85	4.02	3.27	1.57	1.99	3.73	10.82	6.53	8.04	1.57
Merged-chr4-141731830-1	chr4	141731730	141731930	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-8411.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.4	2.77	2.28	0.0	13.91	9.41	1.99	3.62	6.49	8.03	6.53	4.07
Merged-chr17-32073501-1	chr17	32073401	32073601	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17922.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	6.46	0.5	2.85	3.62	5.32	4.7	1.99	4.46	8.26	7.53	8.04	6.27
Merged-chr16-43654586-1	chr16	43654486	43654686	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	9598.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.0	3.52	3.42	2.01	6.95	2.51	1.66	3.2	4.52	6.53	6.03	1.88
Merged-chr9-69992244-1	chr9	69992144	69992344	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	2778.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	5.65	1.76	6.28	0.8	3.27	3.14	4.65	1.93	1.57	0.0	2.01	3.13
Merged-chr14-64624461-1	chr14	64624361	64624561	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28070.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.65	3.02	2.85	1.61	3.27	9.41	4.32	5.19	8.85	2.51	1.51	7.52
Merged-chr15-5263234-1	chr15	5263134	5263334	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19047.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.06	10.56	7.99	4.83	2.05	4.39	0.66	3.67	5.31	10.04	3.52	1.88
Merged-chr9-88438228-1	chr9	88438128	88438328	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	723.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	4.44	1.76	1.14	3.22	3.68	3.76	6.31	4.51	2.75	4.52	2.51	3.76
Merged-chr9-58272483-1	chr9	58272383	58272583	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER89|LTR|ERV1	19319.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	4.04	0.75	2.28	0.8	8.18	2.82	4.98	5.64	8.65	10.54	8.04	3.13
Merged-chr6-47320105-1	chr6	47320005	47320205	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	75709.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	3.02	0.0	0.8	8.59	4.7	2.33	5.13	2.16	1.0	4.02	0.94
Merged-chr5-99226768-1	chr5	99226668	99226868	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	26159.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.23	5.03	0.57	0.0	9.82	6.59	0.0	1.63	6.29	12.05	8.54	0.63
Merged-chr4-126227579-2	chr4	126227495	126227695	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24885.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	5.25	11.57	3.42	3.22	0.82	6.9	1.99	4.88	7.28	7.03	3.52	4.39
Merged-chr17-33557769-1	chr17	33557669	33557869	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	2062.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.25	3.52	2.28	4.83	7.36	7.84	1.99	3.34	9.83	6.53	10.55	2.19
Merged-chr10-34205955-1	chr10	34205855	34206055	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	B3A|SINE|B2	1596.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.85	2.77	2.85	4.83	6.55	4.08	2.66	4.07	9.64	4.02	17.08	7.21
Merged-chr10-37136220-1	chr10	37136120	37136320	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2706.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.65	4.02	0.0	1.21	5.73	1.25	0.66	4.96	7.47	8.03	5.02	3.13
Merged-chr5-92098889-1	chr5	92098789	92098989	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15145.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	1.21	4.28	3.99	2.41	8.59	5.02	1.66	5.94	5.31	1.0	2.51	2.51
Merged-chr19-23520787-1	chr19	23520687	23520887	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-72465.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.4	1.51	1.14	1.61	0.0	3.76	0.0	2.16	10.42	8.54	18.09	7.21
Merged-chr17-12036362-1	chr17	12036262	12036462	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-82922.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	5.25	7.04	5.7	3.22	4.09	8.47	4.32	4.23	9.44	11.05	8.04	1.88
Merged-chr11-50205068-1	chr11	50204968	50205168	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290769, intron 5 of 7)	intron (NM_001290769, intron 5 of 7)	5752.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	6.46	8.05	6.85	4.42	2.86	10.66	1.0	1.37	2.75	6.03	1.0	2.82
Merged-chr9-119324253-1	chr9	119324153	119324353	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1826.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	2.42	4.78	5.13	1.61	0.82	4.39	2.99	6.45	6.29	8.03	7.03	5.95
Merged-chr15-12424350-1	chr15	12424250	12424450	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	102854.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	1.62	5.53	3.42	6.84	3.27	5.96	2.99	5.97	8.65	2.01	4.52	3.76
Merged-chr3-101006420-1	chr3	101006320	101006520	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167906, intron 7 of 8)	MTEa|LTR|ERVL-MaLR	23075.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	4.85	3.52	7.99	8.04	8.18	1.25	6.31	1.74	2.16	6.03	8.04	5.01
Merged-chr3-108718014-1	chr3	108717914	108718114	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029522, intron 1 of 14)	ORR1A3|LTR|ERVL-MaLR	4285.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	3.23	2.52	1.14	1.61	5.73	5.02	1.99	5.55	3.54	3.51	3.52	5.95
Merged-chr16-12043998-1	chr16	12043898	12044098	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	RLTR16C_MM|LTR|ERVK	59885.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	2.02	1.51	11.98	2.41	0.82	5.02	0.33	3.48	13.96	10.04	8.04	0.94
Merged-chr5-35595970-1	chr5	35595870	35596070	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030721, intron 8 of 18)	intron (NM_030721, intron 8 of 18)	-7207.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	2.42	2.52	6.28	0.0	3.27	3.14	6.98	4.32	2.56	2.51	13.57	1.57
Merged-chr11-86807192-1	chr11	86807092	86807292	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026191, intron 1 of 17)	intron (NM_026191, intron 1 of 17)	468.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	1.62	4.02	1.14	6.84	2.45	7.84	2.33	3.53	5.11	7.53	6.53	10.34
Merged-chr11-53809572-2	chr11	53809448	53809648	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	39075.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.86	3.02	6.85	3.22	4.09	7.84	8.3	2.86	8.06	3.01	8.04	4.7
Merged-chr1-51459189-1	chr1	51459089	51459289	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	19210.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	9.29	2.01	0.0	7.24	0.0	0.0	0.0	0.73	12.19	9.04	3.01	3.45
Merged-chr17-84936531-1	chr17	84936431	84936631	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20210.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.25	1.14	0.4	2.45	9.41	2.66	4.63	2.95	2.51	2.01	1.88
Merged-chr11-106410882-1	chr11	106410782	106410982	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023913, intron 12 of 21)	intron (NM_023913, intron 12 of 21)	-28101.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	4.44	6.54	6.85	1.61	1.23	9.72	1.66	4.63	2.75	5.02	2.51	0.94
Merged-chr18-10706111-1	chr18	10706011	10706211	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	585.0	NM_134130	106861.0	Mm.273108	NM_134130	ENSMUSG00000002475	Abhd3	AA675331|LABH3	abhydrolase domain containing 3	protein-coding	6.06	3.02	5.7	2.01	8.18	1.57	5.98	3.03	5.51	5.52	1.0	2.51
Merged-chr2-94252171-1	chr2	94252071	94252271	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9228.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	5.65	1.01	1.14	0.8	2.05	7.53	2.99	5.5	5.51	9.04	1.51	3.13
Merged-chr9-90294207-1	chr9	90294107	90294307	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23438.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.63	2.77	8.56	10.46	5.73	5.02	1.66	5.07	12.19	2.51	5.02	3.76
Merged-chr12-35030151-1	chr12	35030051	35030251	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63C|DNA|hAT-Blackjack	-17038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	1.62	2.01	3.42	10.86	8.18	0.0	4.65	12.08	1.38	1.51	4.52	1.25
Merged-chr14-63126005-1	chr14	63125905	63126105	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	B4A|SINE|B4	3543.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	2.83	0.5	0.0	2.01	1.64	4.7	3.99	4.63	5.51	1.51	4.52	5.01
Merged-chr18-75371665-1	chr18	75371565	75371765	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4300.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.42	1.51	1.14	1.61	2.05	3.45	4.98	5.5	1.57	4.52	4.02	2.51
Merged-chr2-32708836-1	chr2	32708736	32708936	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130860, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	3948.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	3.23	5.03	3.42	0.0	4.09	12.23	3.65	7.65	8.06	10.54	7.03	5.33
Merged-chr6-31660991-1	chr6	31660891	31661091	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5140.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	5.25	5.53	6.85	1.61	2.86	7.21	0.0	4.35	4.72	5.52	4.02	3.76
Merged-chr15-74641749-1	chr15	74641649	74641849	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5431.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	3.23	4.02	4.56	4.83	5.73	7.84	11.96	5.21	1.77	2.51	4.02	2.19
Merged-chr8-14897288-1	chr8	14897188	14897388	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_012000, exon 3 of 3)	3' UTR (NM_012000, exon 3 of 3)	8752.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.23	3.52	1.14	2.82	9.41	7.84	1.0	4.32	3.93	4.02	2.51	4.7
Merged-chr8-11003331-1	chr8	11003231	11003431	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-4519.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	3.63	2.52	2.28	4.83	5.32	8.47	4.65	4.18	2.56	0.0	3.01	0.31
Merged-chr16-90185214-1	chr16	90185114	90185314	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35528.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	5.65	4.02	5.13	2.82	2.45	2.51	5.31	4.57	1.57	1.51	7.03	1.57
Merged-chr4-141958359-1	chr4	141958259	141958459	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24633.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	10.09	6.04	9.13	3.22	11.05	4.08	2.33	6.67	19.08	9.54	13.57	12.22
Merged-chr19-3999426-1	chr19	3999326	3999526	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011533)	TTS (NM_011533)	-1154.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	2.02	7.8	1.14	0.0	9.41	3.45	4.32	5.61	1.57	3.51	2.51	2.19
Merged-chr7-101419736-2	chr7	101419642	101419842	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1949.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	7.27	6.54	1.14	0.8	2.86	7.84	3.99	2.3	5.11	8.03	5.53	4.07
Merged-chr6-125040466-1	chr6	125040366	125040566	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	618.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	4.44	4.02	5.7	4.02	5.32	4.08	2.66	4.09	14.16	7.53	8.54	3.76
Merged-chr6-53289374-1	chr6	53289274	53289474	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 1 of 10)	intron (NM_001327821, intron 1 of 10)	2071.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	2.83	2.52	1.14	2.01	4.91	5.02	1.66	6.06	7.87	12.55	10.55	6.27
Merged-chr1-51657391-2	chr1	51657312	51657512	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-60694.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	1.62	5.53	14.26	8.04	0.0	1.88	0.0	0.08	9.24	1.51	18.59	7.21
Merged-chr15-88867299-1	chr15	88867199	88867399	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5105.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	2.83	3.52	5.7	0.0	1.64	4.08	4.65	0.59	4.92	10.54	3.01	4.07
Merged-chr9-66594327-1	chr9	66594227	66594427	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1212.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	2.42	3.02	5.13	3.22	11.05	7.84	5.31	4.09	8.65	4.52	11.05	1.57
Merged-chr2-102852236-1	chr2	102852136	102852336	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	49429.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.04	1.51	5.7	0.8	2.86	0.31	4.98	7.12	1.38	0.5	3.52	1.88
Merged-chr2-122150093-1	chr2	122149993	122150193	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2406.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	6.86	8.55	1.14	7.64	3.27	2.82	6.31	3.53	8.26	10.54	6.03	5.01
Merged-chr8-36533534-1	chr8	36533434	36533634	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44343.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	2.83	2.52	0.0	2.41	5.32	4.7	4.32	5.97	3.74	10.54	4.02	6.58
Merged-chr6-140682963-1	chr6	140682863	140683063	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56078.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.42	0.0	1.71	2.01	2.05	6.59	5.31	1.37	2.75	3.51	3.52	4.39
Merged-chr15-99018220-1	chr15	99018120	99018320	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11671.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	2.42	4.02	5.7	4.02	4.91	5.02	4.65	6.59	0.98	0.0	5.02	4.07
Merged-chr1-61643407-1	chr1	61643307	61643507	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	4583.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	2.42	1.01	0.0	0.4	5.73	6.59	2.66	4.07	0.0	2.01	3.01	0.94
Merged-chr5-122285209-1	chr5	122285109	122285309	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177242, intron 1 of 5)	CpG	811.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	1.62	3.77	1.14	4.42	4.09	2.51	3.32	2.38	4.92	4.52	11.56	8.46
Merged-chrX-106047072-1	chrX	106046972	106047172	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	Lx8b|LINE|L1	19848.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	6.46	5.79	9.7	2.82	6.55	9.41	6.31	9.95	7.67	9.54	8.54	2.19
Merged-chr9-21598364-1	chr9	21598264	21598464	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5533.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	5.65	6.04	10.27	1.21	4.91	4.39	2.33	3.98	2.56	4.02	3.01	4.07
Merged-chr11-120938161-1	chr11	120938061	120938261	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5289.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.23	3.02	6.85	0.8	4.09	10.98	0.66	2.21	11.8	6.03	7.54	9.4
Merged-chr12-95747536-1	chr12	95747436	95747636	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	55310.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.63	3.02	15.97	3.62	3.68	4.39	6.31	8.02	10.03	8.54	7.54	0.63
Merged-chr10-18430361-1	chr10	18430261	18430461	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	22686.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	2.42	3.52	3.42	1.61	7.77	6.59	1.0	4.93	5.11	1.0	5.53	1.57
Merged-chr1-120327906-1	chr1	120327806	120328006	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12676.0	NM_207233	226359.0	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	3.63	1.01	2.28	1.61	1.64	4.08	2.66	5.69	2.95	5.02	3.52	1.25
Merged-chr2-130781290-1	chr2	130781190	130781390	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029432, intron 12 of 36)	MLTR12|LTR|ERV1	22811.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	0.0	0.0	0.0	0.0	4.09	3.45	4.65	5.47	0.0	0.0	0.0	0.31
Merged-chr8-83593587-1	chr8	83593487	83593687	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	904.0	NM_027179	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.81	6.04	1.14	0.8	3.27	4.7	1.99	1.46	14.75	7.03	10.05	2.19
Merged-chr16-4736437-1	chr16	4736337	4736537	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-5176.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	1.62	0.0	2.85	2.82	1.64	3.76	6.98	4.71	4.52	0.5	4.02	0.0
Merged-chr19-34483782-1	chr19	34483682	34483882	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8647.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	10.9	2.52	1.14	1.61	5.32	6.59	1.66	4.63	6.49	4.02	4.52	2.19
Merged-chr14-74990676-2	chr14	74990585	74990785	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15599.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	6.86	5.53	9.13	3.22	5.32	10.66	3.32	6.25	10.82	9.04	8.54	7.21
Merged-chr17-30112685-2	chr17	30112589	30112789	+	592.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356265, intron 2 of 5)	B4|SINE|B4	107650.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	12.52	6.79	10.84	10.05	4.09	3.14	5.31	9.11	12.98	2.01	5.02	7.21
Merged-chr6-89639261-2	chr6	89639162	89639362	+	592.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	2.02	5.03	2.28	0.8	0.0	5.02	2.66	2.94	8.65	11.05	10.55	1.57
Merged-chr3-116107024-1	chr3	116106924	116107124	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22664.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.23	3.02	4.56	4.42	5.32	10.03	1.99	5.07	6.29	3.51	8.04	1.88
Merged-chr7-121289195-1	chr7	121289095	121289295	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103101.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	1.21	0.0	0.0	0.0	6.14	6.9	3.65	4.46	4.33	6.53	3.01	1.57
Merged-chr16-23182142-1	chr16	23182042	23182242	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155420, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	6862.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	4.85	1.76	10.27	0.4	7.36	4.7	7.31	4.07	4.33	2.01	5.02	3.76
Merged-chr9-44134660-3	chr9	44134557	44134757	+	592.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	-1.0	NM_023061	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	10.9	4.02	6.28	3.62	14.73	4.7	8.3	5.38	7.47	6.53	11.56	8.46
Merged-chr19-36538721-1	chr19	36538621	36538821	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15918.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	4.44	4.53	0.57	6.44	9.0	5.96	5.98	4.71	7.28	11.05	9.04	4.39
Merged-chr2-45241268-2	chr2	45241178	45241378	+	592.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-123836.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.25	7.04	11.41	5.23	5.73	4.7	2.33	4.07	1.38	1.51	0.5	0.63
Merged-chr11-70151257-2	chr11	70151164	70151364	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15359.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	4.04	2.52	3.99	3.62	5.32	8.78	0.66	5.21	8.85	9.54	11.56	4.07
Merged-chr13-118763239-1	chr13	118763139	118763339	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	48540.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	3.63	2.01	1.14	1.61	2.05	4.7	5.31	5.5	1.18	4.02	6.03	4.39
Merged-chr1-39001331-1	chr1	39001231	39001431	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13517.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	2.02	0.75	7.42	5.63	2.45	5.64	2.66	5.66	6.29	7.53	10.05	5.01
Merged-chr1-135396404-1	chr1	135396304	135396504	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-21341.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	2.42	4.78	0.0	2.01	5.32	4.39	3.99	4.46	3.34	3.01	3.52	2.51
Merged-chr11-46128727-2	chr11	46128645	46128845	+	592.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311209, intron 1 of 11)	intron (NM_001311209, intron 1 of 11)	841.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	5.65	4.78	7.42	8.85	2.45	2.51	1.99	6.22	4.13	11.05	18.09	5.64
Merged-chr3-79143766-1	chr3	79143666	79143866	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	1121.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.04	3.52	7.99	6.44	6.14	11.92	0.66	6.28	13.57	5.52	6.53	2.19
Merged-chr17-47842890-1	chr17	47842790	47842990	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8199.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	4.85	9.81	7.99	3.22	3.68	6.59	8.3	4.79	3.54	5.02	5.53	1.25
Merged-chr1-172476114-2	chr1	172475994	172476194	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029612, intron 1 of 3)	intron (NM_029612, intron 1 of 3)	734.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	6.86	3.27	1.14	2.41	2.86	6.59	1.99	5.27	9.64	11.55	10.55	5.33
Merged-chr7-67246961-1	chr7	67246861	67247061	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 8 of 11)	L1MCa|LINE|L1	24345.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.23	6.04	3.42	6.44	9.0	7.53	3.32	4.99	7.28	1.0	2.01	4.39
Merged-chr16-90280694-2	chr16	90280578	90280778	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3808.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	14.13	2.77	7.99	6.44	4.91	10.66	5.31	5.16	9.24	5.52	10.55	6.58
Merged-chr14-31781762-2	chr14	31781643	31781843	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	48672.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	3.63	12.07	7.42	5.63	14.32	2.51	9.3	6.56	9.64	2.01	17.59	7.21
Merged-chr2-5768065-1	chr2	5767965	5768165	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53303.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.46	4.53	0.0	2.41	8.59	10.35	5.98	4.68	7.87	3.51	6.03	2.82
Merged-chr6-124702924-2	chr6	124702810	124703010	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 8 of 11)	intron (NR_149320, intron 8 of 11)	9268.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	4.04	3.77	0.0	2.41	3.27	7.21	1.99	3.45	7.08	2.01	7.03	6.27
Merged-chr19-16178806-1	chr19	16178706	16178906	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	14708.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	5.25	3.27	1.14	9.65	4.91	5.96	5.31	6.11	3.93	3.01	2.51	5.33
Merged-chr13-17780107-2	chr13	17780008	17780208	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	24989.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	2.83	0.0	2.85	2.01	8.18	0.0	4.65	6.5	8.65	4.52	3.52	5.95
Merged-chr16-15889044-2	chr16	15888979	15889179	+	592.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146068)	TTS (NM_146068)	1793.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	10.09	5.28	11.41	9.65	6.95	1.88	5.98	3.73	10.82	8.54	5.53	4.7
Merged-chr8-106388000-1	chr8	106387900	106388100	+	592.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27339.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	1.62	5.79	3.99	4.02	6.95	3.76	6.64	3.79	2.16	4.02	4.02	5.33
Merged-chr6-4988784-1	chr6	4988684	4988884	+	592.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	85464.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.42	3.02	0.0	2.41	4.5	3.76	7.64	4.09	0.98	2.01	5.02	3.76
Merged-chr2-164360448-2	chr2	164360344	164360544	+	592.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3937.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	5.65	2.77	6.85	14.48	9.0	8.78	3.32	5.36	15.14	8.54	5.53	0.63
Merged-chr11-116533181-2	chr11	116533107	116533307	+	592.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025367)	promoter-TSS (NM_025367)	-31.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	6.46	6.54	2.28	2.01	7.36	4.39	1.33	4.82	4.33	3.51	6.53	6.89
Merged-chr8-35808400-2	chr8	35808291	35808491	+	592.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	18168.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.83	1.01	1.14	10.05	6.14	8.47	5.31	7.23	4.13	12.55	10.55	11.59
Merged-chr19-33178624-1	chr19	33178524	33178724	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 3 of 4)	RMER13B|LTR|ERVK	21512.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	2.02	1.01	2.28	0.0	3.68	6.59	4.98	4.35	3.74	6.03	6.03	3.76
Merged-chr7-110908813-1	chr7	110908713	110908913	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	3828.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	4.44	5.03	1.14	4.42	6.55	1.88	2.99	5.52	7.87	8.03	8.04	3.13
Merged-chr3-37617171-1	chr3	37617071	37617271	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3258.0	NR_130161	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0.81	0.5	1.71	1.21	1.64	2.82	3.99	2.19	3.34	2.01	5.02	2.19
Merged-chr13-76255328-1	chr13	76255228	76255428	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	8.08	3.77	3.99	2.82	2.86	7.21	1.66	3.48	0.39	2.01	0.0	1.25
Merged-chr4-43460202-1	chr4	43460102	43460302	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-5576.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.85	1.01	1.71	4.42	5.32	1.25	2.66	6.25	8.65	3.01	7.54	5.01
Merged-chr8-120300987-3	chr8	120300861	120301061	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72731.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	9.69	8.3	18.25	6.44	10.64	6.59	5.31	5.16	4.13	8.54	10.55	3.76
Merged-chr15-82048611-1	chr15	82048511	82048711	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-1013.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	1.21	4.53	2.28	1.61	6.55	0.94	2.33	4.93	4.33	7.03	1.51	4.07
Merged-chr8-122985524-1	chr8	122985424	122985624	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	56760.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.46	2.01	1.14	5.63	11.05	6.59	7.97	4.74	1.97	0.0	0.5	1.57
Merged-chr16-44812825-1	chr16	44812725	44812925	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7903.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.81	3.27	5.7	4.83	1.23	5.02	2.99	4.79	5.31	1.0	3.01	3.45
Merged-chr16-91408064-1	chr16	91407964	91408164	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	1829.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.08	1.51	5.13	4.02	4.5	2.51	1.99	3.0	1.18	7.53	3.52	8.14
Merged-chr13-23747161-1	chr13	23747061	23747261	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175664)	TTS (NM_175664)	427.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	5.25	6.04	2.85	4.42	7.36	7.21	6.64	5.75	9.64	11.05	10.05	7.83
Merged-chr5-76833115-1	chr5	76833015	76833215	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7484.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	3.23	1.76	5.13	5.23	4.09	2.51	3.32	3.67	5.31	1.0	8.04	5.01
Merged-chr13-12413034-1	chr13	12412934	12413134	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	17659.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	2.83	3.27	3.42	1.21	4.5	6.27	0.0	4.35	0.59	1.51	5.02	1.57
Merged-chr9-40264086-1	chr9	40263986	40264186	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5130.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.75	0.0	0.8	0.82	2.51	2.33	1.35	12.39	11.05	8.54	3.13
Merged-chr4-59547729-1	chr4	59547629	59547829	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	1635.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	2.83	2.52	8.56	1.61	9.41	3.14	2.66	4.79	9.05	9.54	10.55	10.96
Merged-chrX-35895372-1	chrX	35895272	35895472	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	6540.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	2.83	2.52	0.0	3.62	3.27	4.39	6.31	3.95	3.54	2.51	4.52	4.7
Merged-chr5-77140321-1	chr5	77140221	77140421	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25198.0	NM_175606	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	7.27	1.51	3.99	5.63	2.05	4.39	4.32	2.47	6.69	6.03	6.03	7.52
Merged-chr4-99061676-1	chr4	99061576	99061776	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 11 of 47)	intron (NM_026082, intron 11 of 47)	30722.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	4.85	7.29	9.13	6.03	2.05	3.76	2.66	4.96	9.05	10.54	5.02	9.08
Merged-chr2-117194430-1	chr2	117194330	117194530	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9303.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	12.92	6.79	5.7	5.63	2.05	4.39	4.98	2.47	3.54	9.04	8.54	4.7
Merged-chr13-95950799-1	chr13	95950699	95950899	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58877.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.44	2.52	4.56	4.02	3.27	6.27	4.65	6.34	3.93	4.52	6.03	4.39
Merged-chr11-80038274-1	chr11	80038174	80038374	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42717.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	5.65	8.3	5.7	2.82	3.27	5.02	4.32	4.6	7.67	9.54	5.53	3.76
Merged-chr9-70081214-1	chr9	70081114	70081314	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43126.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.81	1.51	1.14	1.61	0.82	5.96	0.33	6.28	0.39	1.51	0.0	1.88
Merged-chr10-61273284-1	chr10	61273184	61273384	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081127, exon 1 of 22)	5' UTR (NM_001081127, exon 1 of 22)	154.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	6.46	1.51	11.98	3.22	3.27	8.15	9.63	3.14	3.34	5.02	2.51	1.25
Merged-chr1-152922136-1	chr1	152922036	152922236	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19490.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.04	7.04	1.14	2.82	4.5	5.02	0.33	5.75	4.52	7.03	7.03	4.39
Merged-chr15-64197159-1	chr15	64197059	64197259	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	115514.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.86	4.02	7.99	3.62	1.64	4.08	0.0	5.89	7.08	6.03	9.55	2.51
Merged-chr14-50353337-1	chr14	50353237	50353437	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-4577.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	6.86	5.53	2.28	5.23	2.05	4.39	2.66	2.75	2.56	2.01	3.52	1.57
Merged-chr5-65326818-2	chr5	65326718	65326918	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	8821.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.81	6.79	2.85	6.84	4.91	10.66	4.65	4.07	10.03	6.03	4.02	5.95
Merged-chr6-8655670-1	chr6	8655570	8655770	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010492, intron 10 of 13)	intron (NM_010492, intron 10 of 13)	102788.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.4	0.0	3.99	0.4	5.73	1.25	4.32	6.59	6.29	2.01	4.52	5.01
Merged-chr8-80963262-1	chr8	80963162	80963362	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51644.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.65	2.77	6.85	2.82	6.14	5.33	3.99	7.88	1.97	1.0	1.0	3.45
Merged-chr17-64592949-1	chr17	64592849	64593049	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8700.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.04	8.3	10.27	2.82	4.5	7.21	3.65	7.18	6.69	7.53	3.01	2.19
Merged-chr4-128820673-1	chr4	128820573	128820773	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Zaphod3|DNA|hAT-Tip100	-14561.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.65	5.03	1.71	5.63	2.86	7.84	6.31	5.3	11.8	5.02	3.52	2.19
Merged-chr15-88865030-2	chr15	88864897	88865097	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	2803.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	8.08	5.28	0.57	2.82	2.45	2.2	2.66	3.64	3.34	4.52	3.01	5.01
Merged-chr1-58677714-1	chr1	58677614	58677814	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347056, intron 5 of 13)	B2_Mm2|SINE|B2	14731.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	5.25	4.28	2.28	3.62	5.73	8.47	1.99	4.51	6.1	4.02	4.52	7.21
Merged-chr13-60708327-1	chr13	60708227	60708427	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78037.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.23	2.26	1.14	2.41	3.68	2.2	4.32	5.36	2.36	1.0	3.52	3.13
Merged-chr18-69675513-1	chr18	69675413	69675613	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-250046.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.44	0.5	9.13	4.42	7.36	5.96	2.33	4.57	5.51	6.03	7.54	7.52
Merged-chr8-128204980-1	chr8	128204880	128205080	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73245.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.62	4.53	2.28	4.02	1.64	2.51	5.31	6.0	4.72	1.51	2.01	5.64
Merged-chr13-60488428-1	chr13	60488328	60488528	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113519.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.04	2.26	4.56	9.65	0.0	0.63	0.0	1.21	8.06	10.04	10.05	2.51
Merged-chr6-31104744-1	chr6	31104644	31104844	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-41651.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	1.62	7.8	1.71	5.23	4.09	8.47	1.66	0.39	2.75	7.03	5.53	2.19
Merged-chr6-114258129-1	chr6	114258029	114258229	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-24506.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.81	3.02	0.57	2.01	4.5	1.57	2.66	1.51	1.38	1.51	2.01	1.57
Merged-chr2-45216699-1	chr2	45216599	45216799	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99257.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.81	1.01	6.85	0.0	3.68	2.82	3.65	0.59	0.2	2.51	2.01	0.0
Merged-chr3-104960775-1	chr3	104960675	104960875	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009520, intron 1 of 4)	intron (NM_009520, intron 1 of 4)	934.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.44	7.55	13.69	2.01	4.09	2.82	1.99	5.83	5.9	5.52	10.05	3.13
Merged-chr9-65909716-1	chr9	65909616	65909816	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	706.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	2.02	4.53	4.56	8.45	1.64	7.84	2.99	2.07	8.46	4.02	8.54	5.33
Merged-chr19-47755833-1	chr19	47755733	47755933	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	-676.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	2.83	4.53	13.69	3.62	3.27	7.84	2.99	5.44	2.36	6.03	0.5	1.57
Merged-chr12-102284798-1	chr12	102284698	102284898	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	1157.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	8.88	3.52	2.85	6.44	8.59	3.45	4.32	3.98	7.08	2.51	7.54	2.51
Merged-chr9-103302837-2	chr9	103302745	103302945	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-2482.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	6.06	6.54	6.28	5.63	2.45	6.9	5.65	4.04	9.64	3.01	11.05	3.76
Merged-chr18-58033496-1	chr18	58033396	58033596	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010181, intron 55 of 64)	ORR1G|LTR|ERVL-MaLR	154818.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	1.21	1.51	3.42	0.0	1.64	1.57	3.99	3.98	8.26	6.03	2.51	3.13
Merged-chr5-130613773-1	chr5	130613673	130613873	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021371, intron 2 of 5)	MTD|LTR|ERVL-MaLR	164981.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	2.02	0.5	1.71	0.8	3.68	2.51	2.99	1.46	8.85	10.04	19.09	5.64
Merged-chr11-3964467-1	chr11	3964367	3964567	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	492.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	6.46	3.27	4.56	9.25	2.86	3.45	3.99	4.6	6.69	5.52	9.04	2.19
Merged-chr6-3488328-2	chr6	3488219	3488419	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6179.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	2.02	7.04	9.13	4.02	2.45	2.2	4.65	4.85	6.29	6.03	3.01	0.63
Merged-chr15-53329432-1	chr15	53329332	53329532	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	MTD|LTR|ERVL-MaLR	16751.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.4	1.01	3.42	1.61	4.5	5.33	1.33	6.81	1.57	3.51	2.51	3.76
Merged-chr8-72218928-1	chr8	72218828	72219028	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-802.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	3.23	2.52	2.28	7.24	8.18	8.47	8.64	4.04	3.15	10.54	2.51	5.33
Merged-chr14-46924733-1	chr14	46924633	46924833	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	30195.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.0	1.01	1.71	2.41	2.45	3.76	4.98	4.54	5.51	2.51	2.01	2.82
Merged-chr3-133543691-1	chr3	133543591	133543791	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	699.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.81	2.52	2.85	7.24	2.86	0.94	6.98	4.68	7.47	4.02	5.53	6.58
Merged-chr10-9676511-1	chr10	9676411	9676611	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1303.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.4	2.52	1.14	1.21	1.23	3.14	2.99	4.21	3.34	1.51	2.51	2.82
Merged-chr1-52952935-1	chr1	52952835	52953035	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144953)	promoter-TSS (NM_144953)	-95.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	3.23	1.01	0.0	1.61	1.64	6.27	2.99	0.79	1.18	1.51	1.0	5.01
Merged-chr17-57183042-1	chr17	57182942	57183142	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11139.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	4.04	8.3	4.56	5.23	5.73	10.66	1.66	4.71	6.69	5.52	6.03	7.52
Merged-chrX-142231599-1	chrX	142231499	142231699	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161430, intron 3 of 4)	intron (NM_001161430, intron 3 of 4)	2896.0	NM_001290533	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	0.81	1.01	6.28	3.22	0.0	0.0	0.66	0.36	11.6	3.51	4.52	9.4
Merged-chr1-40415669-1	chr1	40415569	40415769	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13901.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	2.83	5.03	7.99	9.25	6.55	3.76	2.66	5.44	2.16	3.51	3.01	3.76
Merged-chr10-16658716-1	chr10	16658616	16658816	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	437066.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	1.62	1.01	0.0	5.23	0.0	0.31	0.0	0.67	9.05	11.05	16.58	5.01
Merged-chr12-104835008-1	chr12	104834908	104835108	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	30068.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	6.46	4.78	7.42	9.65	8.18	4.39	7.31	3.14	6.29	8.03	6.53	13.78
Merged-chr8-84743290-1	chr8	84743190	84743390	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31079.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	2.83	3.77	6.28	3.22	6.55	18.81	7.64	5.47	4.13	8.03	4.52	5.64
Merged-chr1-191202085-1	chr1	191201985	191202185	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18752.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	2.83	1.01	1.14	1.61	1.64	6.59	2.99	5.36	4.72	3.01	2.51	6.89
Merged-chr11-106499179-1	chr11	106499079	106499279	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1812.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	1.21	4.02	3.99	7.24	3.27	2.82	4.98	2.75	2.75	3.51	1.51	0.0
Merged-chr6-37430642-1	chr6	37430542	37430742	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	L2|LINE|L2	11506.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.85	4.02	0.0	2.01	5.32	2.51	1.0	4.82	4.33	4.52	6.03	1.88
Merged-chr1-131980439-1	chr1	131980339	131980539	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9830.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	2.42	2.01	11.98	3.22	10.23	2.82	6.98	3.87	6.1	4.02	2.01	1.88
Merged-chr14-54783303-1	chr14	54783203	54783403	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	10.09	0.75	4.56	2.01	2.86	5.33	1.99	4.07	4.92	2.51	13.06	7.52
Merged-chr14-25496824-1	chr14	25496724	25496924	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	-37615.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	1.62	2.01	3.42	3.22	5.73	2.51	7.64	4.99	0.79	0.5	3.01	4.07
Merged-chr6-13838030-1	chr6	13837930	13838130	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330666, exon 3 of 4)	5' UTR (NM_001330666, exon 3 of 4)	1912.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	5.65	7.55	5.7	0.8	7.77	5.96	1.99	2.94	7.67	9.04	5.02	8.14
Merged-chr19-42017387-1	chr19	42017287	42017487	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-18651.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	2.02	3.02	0.57	2.01	9.82	0.63	0.66	4.12	2.56	2.51	1.0	3.76
Merged-chr7-145282320-1	chr7	145282220	145282420	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	1691.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.21	2.26	2.28	2.01	6.55	3.76	1.99	3.59	3.93	3.01	1.51	3.13
Merged-chr8-25746001-1	chr8	25745901	25746101	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361595, intron 7 of 15)	RLTR31D_MM|LTR|ERVK	8279.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	4.04	5.53	6.85	2.82	2.45	2.51	4.32	5.02	3.15	3.51	0.5	5.33
Merged-chr9-108336285-1	chr9	108336185	108336385	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016802, intron 5 of 5)	B1_Mus2|SINE|Alu	-2795.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	2.42	3.52	6.28	4.42	10.23	5.02	7.64	4.23	6.88	1.51	7.03	5.01
Merged-chr8-108737341-1	chr8	108737241	108737441	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	22697.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	5.79	13.12	3.22	5.32	1.25	3.32	1.4	9.05	7.53	5.53	4.07
Merged-chr3-109477023-1	chr3	109476923	109477123	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-96984.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.23	1.51	3.99	0.8	4.5	6.27	6.31	4.07	0.59	2.51	5.53	0.0
Merged-chr11-75450842-1	chr11	75450742	75450942	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3875.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	2.83	0.0	1.71	1.61	1.23	1.57	3.99	5.92	2.56	0.5	2.51	5.33
Merged-chr8-106687676-1	chr8	106687576	106687776	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	4608.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	8.48	2.26	7.99	5.63	4.5	5.02	2.66	5.33	6.49	7.03	11.05	4.39
Merged-chr4-98922362-1	chr4	98922262	98922462	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1448.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	5.25	6.54	5.7	4.02	4.91	2.82	3.32	4.29	6.29	2.51	4.02	5.01
Merged-chr16-30727716-1	chr16	30727616	30727816	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	127993.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.81	4.02	2.28	0.8	3.27	6.27	0.0	5.07	5.51	5.02	10.55	1.25
Merged-chr9-58226064-1	chr9	58225964	58226164	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	4914.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	5.65	1.01	1.14	3.62	4.91	5.96	3.32	5.83	6.88	11.05	9.55	8.46
Merged-chr1-16191360-1	chr1	16191260	16191460	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85478.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	3.02	0.0	3.22	4.09	6.9	5.98	8.52	4.33	5.02	2.01	3.76
Merged-chr1-71986481-1	chr1	71986381	71986581	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040454, intron 1 of 2)	RLTR28|LTR|ERVL	18714.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	3.23	0.5	4.56	0.8	0.82	7.84	2.66	4.18	4.92	5.02	6.53	2.51
Merged-chr2-126030340-2	chr2	126030240	126030440	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029455, intron 11 of 16)	intron (NM_029455, intron 11 of 16)	-4318.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	1.62	9.06	7.99	9.25	6.95	7.21	3.65	4.26	5.9	3.51	17.08	8.14
Merged-chr12-76367802-1	chr12	76367702	76367902	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1662.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	2.02	5.03	7.42	3.62	4.09	4.7	1.33	3.45	3.54	2.51	5.02	1.57
Merged-chr15-99234530-1	chr15	99234430	99234630	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010601, intron 10 of 14)	intron (NM_010601, intron 10 of 14)	9554.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	7.27	3.77	7.99	12.07	4.09	3.45	5.31	8.75	7.67	2.01	8.04	3.13
Merged-chr15-77917394-2	chr15	77917296	77917496	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	11598.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	13.33	5.03	5.13	2.41	6.14	12.54	5.65	5.24	11.6	9.54	13.06	8.46
Merged-chr15-12795557-2	chr15	12795463	12795663	+	591.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29094.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	9.29	4.02	10.27	2.41	5.73	4.39	4.32	3.62	7.47	9.54	11.56	1.88
Merged-chr14-122112498-2	chr14	122112376	122112576	+	591.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	5394.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	4.85	3.27	2.28	3.62	4.09	4.08	7.64	5.8	8.65	9.04	4.52	1.88
Merged-chrX-96019736-3	chrX	96019647	96019847	+	591.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62773.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	10.09	4.02	9.7	8.04	12.27	11.29	5.98	4.46	6.69	9.04	11.05	7.52
Merged-chr14-54701524-2	chr14	54701405	54701605	+	591.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10669.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.44	2.01	0.57	3.22	4.09	3.45	4.32	4.07	18.29	9.04	10.55	2.82
Merged-chr17-72902421-1	chr17	72902321	72902521	+	591.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	-15884.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	11.71	3.52	10.27	4.42	0.82	0.0	0.0	0.48	0.39	2.01	0.0	0.0
Merged-chr2-167280829-1	chr2	167280729	167280929	+	591.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40292.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	9.69	5.28	13.12	3.22	7.36	5.33	1.66	4.01	7.47	4.02	7.03	5.64
Merged-chr3-84480505-1	chr3	84480405	84480605	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033301)	promoter-TSS (NM_001033301)	-66.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	2.42	2.52	2.28	5.63	6.95	4.08	5.31	4.65	8.26	0.5	1.51	3.76
Merged-chr10-11450036-2	chr10	11449886	11450086	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010146, intron 3 of 3)	intron (NM_010146, intron 3 of 3)	106541.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	3.23	3.02	5.13	3.62	2.05	4.7	2.33	4.01	4.13	2.51	2.51	2.51
Merged-chr14-70076195-2	chr14	70076105	70076305	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.27	4.78	7.99	1.61	4.5	7.21	3.32	3.84	7.67	8.54	13.57	8.77
Merged-chr5-149679521-1	chr5	149679421	149679621	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	1264.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	2.02	3.27	7.99	0.8	0.82	5.96	6.98	3.45	4.72	6.03	6.53	3.13
Merged-chr10-67052630-1	chr10	67052530	67052730	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44358.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.85	3.52	6.28	4.83	5.73	1.88	4.98	7.43	6.49	4.52	5.53	3.76
Merged-chr2-32566920-1	chr2	32566820	32567020	+	591.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 10 of 10)	intron (NM_153560, intron 10 of 10)	-3938.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	8.08	1.26	3.42	7.24	3.68	8.78	5.31	3.17	6.88	8.03	6.53	6.27
Merged-chr1-77331169-1	chr1	77331069	77331269	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	165599.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	3.23	2.77	3.42	3.62	3.27	8.15	7.31	3.79	1.97	1.51	3.52	2.82
Merged-chr8-124573593-1	chr8	124573493	124573693	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2518.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	1.62	7.8	6.28	1.61	2.05	5.64	3.65	4.37	4.92	1.51	11.05	3.76
Merged-chr5-17847105-2	chr5	17846994	17847194	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2698.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.63	3.27	2.28	8.04	3.27	5.64	4.65	5.97	15.93	3.51	5.53	7.52
Merged-chr7-16739685-2	chr7	16739591	16739791	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	1247.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	5.65	7.8	7.42	4.42	9.0	4.39	5.65	4.21	4.13	6.53	15.07	5.33
Merged-chr11-59297139-2	chr11	59297034	59297234	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-6383.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	7.67	8.8	7.99	1.61	3.27	5.33	2.33	2.16	8.85	8.54	6.53	3.76
Merged-chr8-41276025-2	chr8	41275927	41276127	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023662, exon 12 of 38)	exon (NM_023662, exon 12 of 38)	36268.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	9.69	2.52	13.69	5.63	6.14	1.88	2.66	11.97	1.18	5.02	6.03	3.76
Merged-chr4-55489492-1	chr4	55489392	55489592	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.63	2.01	6.85	3.62	8.59	4.08	1.33	4.82	6.1	4.52	4.52	3.45
Merged-chr13-105032299-1	chr13	105032199	105032399	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	22631.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	4.85	6.04	5.7	12.07	4.09	2.51	6.31	4.04	2.95	5.02	0.5	0.63
Merged-chr16-91866094-2	chr16	91866015	91866215	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	65515.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.42	1.26	3.42	3.22	6.55	5.64	3.65	5.33	4.92	6.03	12.06	3.76
Merged-chrX-38438609-1	chrX	38438509	38438709	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152733, intron 3 of 9)	intron (NR_152733, intron 3 of 9)	17851.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	4.85	4.02	3.42	4.83	2.45	7.21	4.65	4.26	7.08	3.01	10.05	5.33
Merged-chr17-27026160-2	chr17	27026052	27026252	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	2475.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	6.06	10.31	10.84	6.03	3.68	5.64	6.31	3.7	4.33	4.52	7.03	5.64
Merged-chr18-12169611-1	chr18	12169511	12169711	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029623, intron 2 of 19)	intron (NM_029623, intron 2 of 19)	881.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	7.27	4.28	2.28	3.22	6.14	4.7	10.3	3.56	1.97	1.51	3.52	5.64
Merged-chr12-112802727-2	chr12	112802632	112802832	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6243.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	9.69	2.26	9.13	0.8	1.64	5.96	2.99	6.36	10.23	3.01	4.02	6.58
Merged-chr11-64654917-1	chr11	64654817	64655017	+	591.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-218243.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	15.34	8.8	10.84	3.62	7.36	11.29	2.99	0.62	10.42	12.55	9.55	1.88
Merged-chr13-5859848-1	chr13	5859748	5859948	+	591.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1641.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.46	2.01	5.7	0.8	6.55	4.39	6.98	4.77	6.88	7.03	10.55	5.64
Merged-chr17-25837213-2	chr17	25837097	25837297	+	591.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144816)	promoter-TSS (NM_144816)	-70.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	9.69	7.8	7.99	2.82	3.68	4.7	5.98	3.95	5.11	5.52	6.03	7.83
Merged-chr2-73554004-2	chr2	73553889	73554089	+	591.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24502.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	1.21	5.28	2.28	3.22	5.73	4.39	1.99	4.91	9.64	10.04	3.52	3.13
Merged-chr10-7810149-3	chr10	7810051	7810251	+	591.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026141, intron 10 of 12)	intron (NM_026141, intron 10 of 12)	17257.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	6.46	5.79	4.56	5.63	9.41	8.47	3.32	5.47	8.85	2.01	3.52	6.27
Merged-chr10-22186600-2	chr10	22186490	22186690	+	591.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	(CA)n|Simple_repeat|Simple_repeat	12688.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	12.52	7.29	11.41	9.65	11.45	10.98	12.95	18.73	2.75	0.0	2.51	2.51
Merged-chr1-138126483-1	chr1	138126383	138126583	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48643.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.25	1.76	2.85	0.0	2.86	6.59	2.66	4.29	6.29	3.51	2.01	1.88
Merged-chrX-139871546-1	chrX	139871446	139871646	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_029413, exon 1 of 16)	5' UTR (NM_029413, exon 1 of 16)	108.0	NM_029413	75746.0	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding	2.83	3.52	1.14	1.61	5.73	3.76	1.99	5.1	5.7	0.5	1.0	1.88
Merged-chr2-93523841-1	chr2	93523741	93523941	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60891.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.5	0.0	0.0	2.45	1.57	4.98	3.53	0.98	0.0	6.03	5.95
Merged-chr15-8342125-1	chr15	8342025	8342225	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	102338.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.4	1.26	3.99	6.84	5.32	6.27	3.32	4.99	4.72	4.02	3.52	1.88
Merged-chr1-135106067-1	chr1	135105967	135106167	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033409)	promoter-TSS (NM_001033409)	-791.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	3.63	4.78	6.28	0.8	5.32	3.14	0.0	6.9	2.75	2.51	4.52	3.45
Merged-chr10-99393775-1	chr10	99393675	99393875	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	130544.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.65	3.27	3.42	6.44	7.36	7.84	1.66	4.68	4.92	3.51	2.01	3.13
Merged-chr10-81415671-1	chr10	81415571	81415771	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106141)	TTS (NR_106141)	626.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	4.85	3.27	1.14	4.02	3.68	5.64	4.32	5.24	4.72	4.02	3.01	7.83
Merged-chr18-37720442-1	chr18	37720342	37720542	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033576)	promoter-TSS (NM_033576)	-112.0	NM_033576	93701.0	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	3.63	4.28	0.0	9.65	9.82	3.76	8.3	3.11	4.13	1.51	5.02	5.01
Merged-chr16-33382627-1	chr16	33382527	33382727	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358570, intron 1 of 8)	B1_Mus1|SINE|Alu	1325.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	6.46	2.26	10.84	7.64	6.14	4.39	1.33	9.2	6.49	3.01	2.01	3.13
Merged-chr4-151806866-1	chr4	151806766	151806966	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	54902.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	1.62	2.01	2.28	2.01	4.09	5.96	2.66	6.87	0.79	1.0	3.52	0.94
Merged-chr14-60910336-2	chr14	60910226	60910426	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	125760.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	6.06	0.75	4.56	5.63	5.32	2.51	6.64	4.6	4.92	6.53	12.06	8.77
Merged-chr3-59207310-1	chr3	59207210	59207410	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028808)	TTS (NM_028808)	3572.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	1.21	4.02	0.0	0.8	8.59	6.9	1.33	1.68	5.9	2.01	1.51	2.51
Merged-chr5-64224912-1	chr5	64224812	64225012	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5445.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.83	1.01	3.42	2.41	5.73	5.33	6.64	4.99	5.7	4.52	13.06	4.39
Merged-chr3-121674327-2	chr3	121674233	121674433	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033814, intron 3 of 5)	intron (NM_001033814, intron 3 of 5)	3570.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0.81	1.01	2.28	2.82	1.23	0.63	4.98	4.37	7.87	4.52	8.04	1.88
Merged-chr14-100968870-1	chr14	100968770	100968970	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	231199.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	2.02	2.52	0.0	5.23	5.73	0.63	4.65	5.55	0.79	0.0	0.0	0.0
Merged-chr2-181334211-2	chr2	181334097	181334297	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001882, intron 8 of 33)	B3|SINE|B2	13391.0	NR_030710	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	8.48	11.57	5.13	9.25	1.23	9.09	1.99	4.12	9.83	11.05	12.06	4.7
Merged-chr7-99044574-1	chr7	99044474	99044674	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	96570.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.23	3.52	1.14	5.63	7.36	4.39	1.33	5.05	4.33	5.52	8.04	6.58
Merged-chr2-30473036-2	chr2	30472937	30473137	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	1162.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	5.25	1.51	0.0	4.02	3.68	3.76	6.31	3.39	3.93	6.53	3.01	7.83
Merged-chr18-84679717-1	chr18	84679617	84679817	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	2342.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	4.85	3.52	6.28	5.23	3.68	1.57	0.33	2.44	9.24	10.04	3.52	6.27
Merged-chr2-127339540-1	chr2	127339440	127339640	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172539, intron 1 of 8)	intron (NM_172539, intron 1 of 8)	901.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	6.46	7.04	11.98	4.42	2.05	5.02	1.33	1.23	8.46	4.02	2.01	2.19
Merged-chr14-10392330-1	chr14	10392230	10392430	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	Lx5|LINE|L1	61128.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	4.44	7.8	6.28	1.61	2.05	3.14	3.65	4.18	3.93	6.03	4.52	3.13
Merged-chr2-167823595-2	chr2	167823452	167823652	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108775.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.06	6.04	5.7	5.63	2.86	3.45	4.98	5.78	7.67	8.54	8.54	4.39
Merged-chr2-24976734-2	chr2	24976639	24976839	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	706.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	9.29	11.07	3.42	8.85	5.73	11.6	10.96	3.45	11.01	6.53	6.03	7.83
Merged-chr17-43338489-1	chr17	43338389	43338589	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-21942.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.02	0.5	3.42	0.0	10.64	1.88	2.99	4.12	5.51	1.0	9.04	3.13
Merged-chr11-98796342-1	chr11	98796242	98796442	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001361932, exon 1 of 3)	exon (NM_001361932, exon 1 of 3)	826.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.27	2.01	3.42	4.02	4.91	1.57	3.99	5.13	6.1	5.52	5.53	7.21
Merged-chr4-147941481-1	chr4	147941381	147941581	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	586.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	6.86	6.04	4.56	4.02	4.09	8.47	4.98	4.12	6.88	11.55	2.51	5.95
Merged-chr2-31809408-1	chr2	31809308	31809508	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183424, intron 1 of 1)	intron (NM_183424, intron 1 of 1)	1172.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	8.48	6.29	2.28	2.41	2.45	5.64	4.65	2.1	2.36	1.0	1.0	2.19
Merged-chr16-22399453-1	chr16	22399353	22399553	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358428, intron 8 of 12)	intron (NM_001358428, intron 8 of 12)	38915.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	8.08	4.53	4.56	6.03	6.14	6.59	13.29	3.45	10.03	9.54	4.52	2.19
Merged-chr10-77977001-1	chr10	77976901	77977101	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1649.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	8.88	4.02	3.42	3.22	2.45	3.14	3.65	2.02	6.69	5.52	11.56	4.7
Merged-chr8-82369867-1	chr8	82369767	82369967	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	32719.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.23	3.52	0.0	2.41	0.82	5.33	3.32	4.51	1.38	2.51	4.02	1.88
Merged-chr2-33072685-1	chr2	33072585	33072785	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355201, intron 3 of 29)	intron (NM_001355201, intron 3 of 29)	13772.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.44	2.52	8.56	2.41	1.64	0.94	3.32	2.83	0.59	1.0	4.02	5.33
Merged-chr15-51683660-1	chr15	51683560	51683760	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181801.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	1.21	2.26	0.0	6.03	5.73	3.14	4.65	3.79	2.95	0.0	0.5	1.57
Merged-chr3-40526340-1	chr3	40526240	40526440	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3428.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	4.44	12.83	3.99	6.44	7.36	8.78	5.65	5.07	10.42	7.03	7.54	6.27
Merged-chr2-60825925-1	chr2	60825825	60826025	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	55513.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	1.62	2.52	0.0	1.21	1.23	2.82	5.98	4.37	3.54	1.51	3.01	0.94
Merged-chr2-58482008-1	chr2	58481908	58482108	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	79402.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	2.83	4.53	12.55	9.65	0.0	0.63	0.66	0.48	3.54	4.52	0.0	3.13
Merged-chr19-41379774-1	chr19	41379674	41379874	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	5296.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.67	4.53	2.85	2.41	6.55	4.39	3.32	7.71	8.85	1.0	7.54	1.88
Merged-chr15-86221092-1	chr15	86220992	86221192	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	MLT1E2|LTR|ERVL-MaLR	6633.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.65	1.01	1.14	0.8	1.64	1.25	3.99	4.57	4.13	3.01	0.0	1.88
Merged-chr19-41481285-1	chr19	41481185	41481385	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-43967.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	7.27	2.77	0.57	4.42	2.05	8.15	2.99	1.85	3.54	7.03	4.02	3.13
Merged-chr8-121898643-1	chr8	121898543	121898743	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	9043.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	8.48	7.55	3.42	5.23	2.86	1.88	4.32	1.21	0.0	1.51	1.0	0.63
Merged-chr9-106469594-1	chr9	106469494	106469694	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001311150)	TTS (NM_001311150)	-3654.0	NM_001159652	436090.0	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	9.29	3.02	10.27	2.01	4.09	5.96	6.98	4.15	1.77	0.5	4.52	4.39
Merged-chr5-145177886-1	chr5	145177786	145177986	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	10673.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	1.21	2.26	2.28	3.62	7.77	4.39	1.33	4.18	6.1	4.52	11.05	3.76
Merged-chr6-108667880-1	chr6	108667780	108667980	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011498)	TTS (NM_011498)	-6946.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.42	1.01	1.71	0.8	0.0	3.45	5.98	4.4	4.33	2.51	0.0	3.13
Merged-chr16-58454652-1	chr16	58454552	58454752	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	46117.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	3.23	2.01	3.99	0.4	4.5	5.02	4.98	3.36	3.15	5.02	10.55	3.13
Merged-chr9-9082825-1	chr9	9082725	9082925	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027823, intron 4 of 22)	LTR16E2|LTR|ERVL	-153463.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	1.62	3.27	6.28	4.02	5.32	5.33	4.65	4.43	12.0	3.51	6.03	4.39
Merged-chr8-40926662-1	chr8	40926562	40926762	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	429.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.02	0.0	2.85	1.61	2.05	5.33	5.65	4.07	4.52	7.53	9.04	3.76
Merged-chr14-75835237-1	chr14	75835137	75835337	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9727.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	9.69	11.57	8.56	4.02	7.36	10.35	6.31	7.96	11.01	19.08	11.05	10.34
Merged-chr10-61423420-1	chr10	61423320	61423520	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5448.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	1.21	3.77	2.85	3.22	5.32	5.02	1.0	5.47	6.88	4.52	9.55	7.52
Merged-chr8-124959489-1	chr8	124959389	124959589	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10235.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	3.63	2.52	1.14	2.01	6.55	6.27	6.98	4.04	0.2	2.51	3.52	1.57
Merged-chr5-110636084-1	chr5	110635984	110636184	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17298.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.81	0.0	0.0	0.0	0.0	0.0	0.0	0.56	9.05	4.02	8.54	7.83
Merged-chr4-136132796-1	chr4	136132696	136132896	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-11026.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.63	2.26	0.0	2.82	1.64	6.59	2.33	2.47	5.7	10.54	9.04	8.77
Merged-chr1-144283977-1	chr1	144283877	144284077	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-34873.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.86	2.77	2.85	1.61	7.77	5.33	6.64	4.96	5.7	2.51	10.55	6.89
Merged-chr12-77241023-2	chr12	77240911	77241111	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045554, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	2272.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	4.04	7.29	2.28	8.04	5.73	4.08	2.66	4.04	7.08	10.04	14.07	6.89
Merged-chr19-24965542-1	chr19	24965442	24965642	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-3926.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	3.63	4.28	3.42	2.41	7.36	3.45	1.99	5.21	9.24	5.52	8.54	8.14
Merged-chr2-172442187-1	chr2	172442087	172442287	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025542, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	1609.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	1.62	2.52	3.42	3.22	1.64	5.96	1.0	3.76	6.49	2.51	2.51	3.13
Merged-chr14-21756982-2	chr14	21756860	21757060	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359953, intron 1 of 5)	B4A|SINE|B4	5408.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	5.25	7.8	10.27	6.44	1.64	0.0	2.33	0.03	5.7	6.03	4.52	6.89
Merged-chr11-53528999-1	chr11	53528899	53529099	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	8811.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	2.42	2.77	7.42	4.42	2.05	2.2	4.32	5.55	6.49	3.01	3.01	3.76
Merged-chr2-129363283-1	chr2	129363183	129363383	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-6619.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	2.42	6.54	0.0	0.4	8.59	10.03	0.0	2.16	10.03	8.54	4.52	0.94
Merged-chr11-104317397-1	chr11	104317297	104317497	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285454, intron 6 of 9)	L4_C_Mam|LINE|RTE-X	85961.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	4.04	4.28	3.42	2.41	4.09	5.64	5.98	4.79	5.31	7.03	5.02	2.51
Merged-chr12-41033467-1	chr12	41033367	41033567	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 2 of 6)	MLT1F|LTR|ERVL-MaLR	9377.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	2.42	2.01	12.55	8.04	6.14	3.76	2.66	5.02	3.15	0.0	4.02	3.13
Merged-chr1-144002485-1	chr1	144002385	144002585	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009061, intron 3 of 4)	intron (NM_009061, intron 3 of 4)	1664.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	9.69	5.79	14.83	6.84	8.18	6.59	6.31	9.5	9.24	5.02	10.55	8.77
Merged-chr7-34167018-2	chr7	34166929	34167129	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016682, intron 1 of 16)	B3|SINE|B2	1500.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	4.04	1.76	0.0	1.61	1.64	3.45	3.32	5.5	8.46	4.52	10.55	2.19
Merged-chr17-50392887-1	chr17	50392787	50392987	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-99267.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.0	4.53	0.0	3.22	4.91	2.51	0.0	1.57	2.95	2.51	5.02	4.7
Merged-chr6-124888267-1	chr6	124888167	124888367	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013488)	promoter-TSS (NM_013488)	-67.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	3.63	2.77	5.13	5.23	3.27	3.14	4.98	5.89	0.2	2.01	3.01	0.63
Merged-chr13-28757948-1	chr13	28757848	28758048	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-47075.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	2.42	3.77	6.28	4.02	4.09	4.08	2.66	6.53	2.75	0.0	0.5	1.25
Merged-chr11-11684983-1	chr11	11684883	11685083	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-942.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.23	3.02	2.28	7.24	0.0	4.39	3.99	5.1	5.51	0.5	4.02	4.39
Merged-chr3-116124396-1	chr3	116124296	116124496	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011693, exon 4 of 9)	exon (NM_011693, exon 4 of 9)	5292.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	1.62	4.02	1.14	1.61	8.18	6.9	2.33	1.71	6.1	4.02	5.53	1.25
Merged-chr14-73383650-1	chr14	73383550	73383750	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	PB1D10|SINE|Alu	1639.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	1.62	2.52	6.28	8.85	6.95	0.94	6.31	3.36	4.52	4.52	2.51	4.7
Merged-chr7-81839956-1	chr7	81839856	81840056	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10525.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	2.02	0.0	2.28	8.45	2.05	2.51	6.31	3.56	1.18	4.52	2.51	1.57
Merged-chr6-6863715-1	chr6	6863615	6863815	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_002839)	TTS (NR_002839)	381.0	NM_010057	13396.0	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	4.85	0.5	1.71	4.02	2.45	4.08	7.31	1.46	1.57	2.01	1.0	4.07
Merged-chr14-16479091-1	chr14	16478991	16479191	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	96385.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	5.25	5.79	9.7	9.65	4.09	2.51	0.66	3.08	4.33	7.03	6.53	5.33
Merged-chr13-94062902-1	chr13	94062802	94063002	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	5106.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.02	3.02	1.71	1.61	5.32	4.08	4.98	7.32	3.34	3.01	5.53	5.95
Merged-chr3-146109114-1	chr3	146109014	146109214	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1078.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	10.09	2.52	1.71	2.41	0.82	5.02	1.33	6.36	0.59	1.0	1.51	1.88
Merged-chr9-48835963-1	chr9	48835863	48836063	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033324)	promoter-TSS (NM_001033324)	-18.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	2.83	2.52	0.0	2.82	1.23	6.9	4.32	3.76	2.95	5.52	3.52	6.27
Merged-chr9-114822003-1	chr9	114821903	114822103	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	22149.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	4.04	3.02	4.56	5.63	5.32	1.25	1.66	6.45	6.88	3.01	7.54	6.89
Merged-chr13-37338864-1	chr13	37338764	37338964	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6481.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.42	7.04	2.85	12.07	12.27	6.27	1.99	4.12	3.15	5.52	3.52	1.25
Merged-chr6-84315697-1	chr6	84315597	84315797	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108141.0	NR_046063	100038556.0	Mm.387783	NR_046063	ENSMUSG00000107797	Gm10445	-	predicted gene 10445	ncRNA	0.81	1.51	3.42	1.61	0.82	6.27	2.33	7.18	4.13	3.01	4.02	3.45
Merged-chr5-135475629-1	chr5	135475529	135475729	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	69493.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.81	3.52	0.57	1.61	4.91	4.39	1.99	6.87	5.31	0.0	10.05	5.95
Merged-chr12-101102861-1	chr12	101102761	101102961	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19159.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	3.23	3.02	6.28	6.44	1.64	3.45	5.31	3.25	15.93	7.53	9.55	5.64
Merged-chr15-73044705-1	chr15	73044605	73044805	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 3 of 21)	intron (NM_029640, intron 3 of 21)	11107.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.44	1.76	9.13	4.83	4.91	1.57	3.99	4.43	8.85	7.03	4.02	3.13
Merged-chr10-28380438-1	chr10	28380338	28380538	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 6 of 30)	intron (NM_001359356, intron 6 of 30)	-287922.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.81	0.5	0.0	0.0	4.09	0.94	1.33	5.19	2.36	2.01	1.51	1.25
Merged-chr11-97288909-1	chr11	97288809	97289009	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8333.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.0	0.5	0.0	0.0	4.91	5.33	1.99	5.86	0.39	0.5	0.5	0.0
Merged-chr12-28635323-1	chr12	28635223	28635423	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011300, intron 3 of 6)	intron (NM_011300, intron 3 of 6)	630.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.81	6.04	1.14	4.83	5.32	6.59	2.99	5.24	6.69	2.01	3.01	2.51
Merged-chr15-62169808-1	chr15	62169708	62169908	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	49643.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.81	1.26	0.0	0.0	11.45	3.76	0.66	0.03	10.03	1.0	2.01	5.01
Merged-chr11-51800915-1	chr11	51800815	51801015	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37252.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	6.86	6.04	6.85	2.41	0.82	2.51	1.0	3.64	8.65	0.5	8.54	5.01
Merged-chr1-153945381-1	chr1	153945281	153945481	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45452.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.65	4.78	5.7	1.61	2.45	5.02	1.99	4.99	5.51	8.03	4.02	5.33
Merged-chr11-65787676-1	chr11	65787576	65787776	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316368, intron 1 of 10)	CpG	683.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	3.63	7.55	0.0	11.26	5.73	7.84	14.62	8.16	10.62	10.04	5.53	9.4
Merged-chr7-45898349-1	chr7	45898249	45898449	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1280.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	2.02	7.04	4.56	1.61	14.73	5.96	4.98	2.8	8.26	4.02	7.03	7.83
Merged-chr5-124616662-2	chr5	124616566	124616766	+	590.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026486, intron 11 of 18)	intron (NM_026486, intron 11 of 18)	-12386.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	6.46	6.79	5.7	8.45	8.18	5.64	3.99	5.21	8.26	11.05	10.05	14.1
Merged-chr10-44657785-2	chr10	44657636	44657836	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198988.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.44	3.02	3.42	4.02	6.55	3.14	5.65	7.29	6.88	2.51	5.53	5.01
Merged-chr1-95355392-2	chr1	95355279	95355479	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	41751.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	7.27	2.01	7.99	8.04	6.55	5.33	5.98	15.03	11.6	12.05	9.04	7.52
Merged-chr10-99602521-2	chr10	99602404	99602604	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6667.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.63	2.01	1.71	2.01	1.64	6.59	3.65	5.38	8.46	7.53	8.04	7.52
Merged-chr3-87227028-2	chr3	87226961	87227161	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	36463.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.83	3.52	1.14	11.26	2.45	6.9	3.99	3.5	6.88	6.03	10.55	4.7
Merged-chr7-140959358-2	chr7	140959243	140959443	+	590.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3382.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.27	7.04	5.13	0.4	8.18	5.02	3.32	5.92	6.69	11.05	6.53	5.33
Merged-chr8-40986300-1	chr8	40986200	40986400	+	590.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 4 of 5)	intron (NM_026840, intron 4 of 5)	-31168.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.81	5.03	2.85	0.0	7.77	1.88	6.31	3.81	9.05	10.54	7.54	6.27
Merged-chr2-160359095-1	chr2	160358995	160359195	+	590.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7970.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	11.31	10.82	2.28	2.01	11.05	15.99	8.3	4.99	5.7	10.04	0.5	2.19
Merged-chr11-11765408-1	chr11	11765308	11765508	+	590.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	43554.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.86	1.51	2.28	2.41	1.64	1.57	1.0	2.13	3.93	0.5	6.53	3.76
Merged-chrX-74413536-2	chrX	74413448	74413648	+	590.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008062, intron 5 of 12)	intron (NM_008062, intron 5 of 12)	-11064.0	NM_001161421	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	12.52	5.03	9.13	1.61	4.91	5.33	2.99	4.15	10.82	9.04	17.08	3.76
Merged-chr18-82878082-1	chr18	82877982	82878182	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22185.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	7.67	2.01	5.13	1.21	9.82	5.96	2.66	5.47	4.33	9.04	9.04	5.95
Merged-chr7-16507485-2	chr7	16507392	16507592	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172739, intron 5 of 6)	intron (NM_172739, intron 5 of 6)	-30712.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	6.06	6.29	9.13	6.03	1.64	5.64	2.66	6.2	6.1	3.51	10.55	3.13
Merged-chr19-56391737-1	chr19	56391637	56391837	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1699.0	NM_001286552	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	2.42	3.27	1.71	2.41	1.64	5.02	1.99	1.63	1.77	2.01	3.01	0.94
Merged-chr6-125231276-1	chr6	125231176	125231376	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015604)	promoter-TSS (NR_015604)	0.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	4.85	6.29	5.13	4.42	4.5	9.41	5.31	4.77	8.65	10.04	9.55	2.51
Merged-chr14-54576631-2	chr14	54576492	54576692	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010590, exon 1 of 8)	exon (NM_010590, exon 1 of 8)	1069.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	3.23	7.29	6.85	0.8	2.45	7.21	2.33	4.12	2.16	7.03	8.04	4.07
Merged-chr5-136971005-1	chr5	136970905	136971105	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021719, intron 1 of 4)	intron (NM_021719, intron 1 of 4)	3136.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	3.23	2.77	6.28	4.02	8.18	6.59	1.33	4.99	9.05	6.53	6.53	5.33
Merged-chr5-121252793-1	chr5	121252693	121252893	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	32574.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	2.83	2.77	0.57	2.01	3.68	6.27	4.65	4.18	2.95	7.03	7.03	2.19
Merged-chr1-64909100-1	chr1	64909000	64909200	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 3 of 7)	MER21B|LTR|ERVL	47724.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.23	0.0	3.42	0.8	5.73	1.25	4.65	6.81	1.18	1.0	3.01	1.25
Merged-chr10-96080679-1	chr10	96080579	96080779	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140016.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	2.42	1.26	0.0	0.4	3.68	8.15	3.99	4.29	3.74	5.02	9.04	3.76
Merged-chr1-58031337-1	chr1	58031237	58031437	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009676, intron 1 of 34)	intron (NM_009676, intron 1 of 34)	1368.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	4.04	4.28	3.42	8.04	5.73	6.59	6.64	3.81	7.47	7.03	3.52	4.7
Merged-chrX-170676106-2	chrX	170675954	170676154	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308488, intron 5 of 7)	intron (NM_001308488, intron 5 of 7)	3410.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	1.62	6.29	3.42	3.22	6.14	2.82	1.66	2.8	1.57	3.01	3.01	3.76
Merged-chr9-15029241-1	chr9	15029141	15029341	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	16237.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	5.25	3.27	2.85	10.86	4.91	3.45	4.98	3.5	9.44	7.03	6.53	6.58
Merged-chr18-66404691-1	chr18	66404591	66404791	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53913.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.81	3.52	2.28	4.83	2.45	5.33	3.32	8.05	4.52	5.02	8.04	1.88
Merged-chr1-155447472-1	chr1	155447372	155447572	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-30028.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.48	6.79	7.42	14.48	3.27	2.82	1.99	6.14	5.11	9.54	14.57	5.33
Merged-chr17-37029514-1	chr17	37029414	37029614	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6116.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	13.33	7.8	11.98	9.65	5.73	4.39	4.65	3.79	7.87	7.03	8.54	2.82
Merged-chr16-91010195-2	chr16	91010095	91010295	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164483, intron 1 of 31)	intron (NM_001164483, intron 1 of 31)	900.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.46	5.03	1.71	2.41	5.73	2.82	7.64	3.45	8.85	6.53	4.52	7.52
Merged-chr15-33114995-2	chr15	33114891	33115091	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	31862.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	3.23	2.77	0.0	4.83	2.86	3.45	5.31	5.44	6.69	6.03	11.05	3.45
Merged-chr9-59767095-2	chr9	59766988	59767188	+	590.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	15914.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	5.25	2.77	9.7	3.22	4.91	6.27	6.31	5.1	8.46	11.55	10.05	5.33
Merged-chr9-121840098-1	chr9	121839998	121840198	+	590.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-637.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	14.54	3.02	9.13	8.85	4.09	1.25	2.33	6.31	10.62	7.03	9.55	11.28
Merged-chr15-67321631-3	chr15	67321520	67321720	+	590.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	RLTR24B_MM|LTR|ERV1	94851.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.85	6.54	12.55	4.83	7.77	11.6	6.64	3.17	6.29	5.52	13.57	8.77
Merged-chr16-57383794-3	chr16	57383717	57383917	+	590.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	30540.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.42	3.52	11.41	12.47	3.27	6.59	2.99	9.81	8.46	6.53	6.03	6.58
Merged-chr7-92743559-2	chr7	92743459	92743659	+	590.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	1845.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	9.69	4.78	4.56	4.83	6.55	6.9	1.66	4.26	6.29	5.52	3.52	5.95
Merged-chr6-30326212-2	chr6	30326109	30326309	+	590.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21670.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	8.48	6.29	11.41	2.01	6.95	3.45	7.97	3.64	7.47	2.51	2.51	5.95
Merged-chr11-114636447-2	chr11	114636344	114636544	+	590.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32099.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	8.48	4.53	2.85	4.83	4.5	5.96	7.64	4.93	7.08	7.03	4.02	5.33
Merged-chr10-52376656-2	chr10	52376545	52376745	+	590.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	5479.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	8.48	11.07	11.98	3.62	6.55	8.78	5.31	5.3	12.59	5.52	9.04	5.64
Merged-chr9-55252256-2	chr9	55252125	55252325	+	590.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	B2_Mm2|SINE|B2	31400.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.85	3.02	11.98	10.05	4.5	4.7	7.31	4.85	5.7	7.03	5.02	4.07
Merged-chr14-103682563-1	chr14	103682463	103682663	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	16869.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	4.04	2.26	1.14	5.23	3.68	0.63	4.32	4.07	0.79	0.0	0.0	1.57
Merged-chr13-34344324-1	chr13	34344224	34344424	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033167, exon 1 of 11)	exon (NM_001033167, exon 1 of 11)	858.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	2.83	5.53	0.0	2.82	4.5	4.39	2.99	5.13	0.59	3.01	5.53	2.82
Merged-chr12-3429921-1	chr12	3429821	3430021	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	3064.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	7.67	2.01	0.0	2.82	5.32	5.02	1.33	3.81	10.82	8.03	6.53	1.88
Merged-chr6-91110584-1	chr6	91110484	91110684	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018815, intron 1 of 39)	L1MB3|LINE|L1	6242.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	4.44	5.28	6.28	2.41	2.86	5.33	4.32	4.6	4.92	2.51	2.01	5.64
Merged-chr1-156532979-2	chr1	156532880	156533080	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-25807.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.25	1.51	1.14	4.83	5.32	6.27	4.32	0.81	10.23	7.53	3.52	2.51
Merged-chr10-7390857-2	chr10	7390738	7390938	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	82639.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	7.67	3.52	3.42	12.47	7.36	6.59	4.65	10.04	3.34	1.51	7.54	2.19
Merged-chr9-114694264-1	chr9	114694164	114694364	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	5433.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	3.23	4.28	4.56	2.01	7.36	3.76	1.0	4.46	7.67	1.51	6.03	5.01
Merged-chr12-69177214-1	chr12	69177114	69177314	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081406, intron 3 of 3)	B2_Mm1a|SINE|B2	6853.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	9.69	8.05	5.7	5.63	12.27	7.53	7.31	2.41	7.08	5.52	7.54	3.76
Merged-chr19-43512961-1	chr19	43512861	43513061	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	11644.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	5.65	3.02	1.71	5.63	6.14	5.33	4.32	6.28	8.65	7.03	17.59	5.33
Merged-chr7-132620660-1	chr7	132620560	132620760	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	10017.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.81	2.01	2.85	2.01	2.45	5.33	3.99	4.23	3.74	3.01	3.52	3.13
Merged-chr12-73310375-1	chr12	73310275	73310475	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 4 of 15)	intron (NM_001037717, intron 4 of 15)	23527.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	10.5	5.28	6.85	3.22	4.5	2.82	4.98	8.72	1.97	1.51	4.52	0.63
Merged-chr11-76419434-1	chr11	76419334	76419534	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346670, intron 21 of 21)	intron (NM_001346670, intron 21 of 21)	12291.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	3.63	7.04	6.28	8.45	0.41	1.57	5.98	3.93	2.16	5.52	8.04	2.19
Merged-chr19-16065092-1	chr19	16064992	16065192	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67739.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.44	4.53	2.28	1.61	6.55	5.96	2.33	5.07	9.24	12.55	9.04	1.25
Merged-chr9-77716351-1	chr9	77716251	77716451	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38184.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	1.26	2.28	0.0	0.41	3.14	2.66	2.69	3.74	2.01	5.02	0.94
Merged-chr13-111792624-1	chr13	111792524	111792724	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16369.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.44	5.28	0.0	0.8	6.55	5.02	3.99	4.79	2.16	5.52	6.53	2.19
Merged-chr1-23268316-1	chr1	23268216	23268416	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3953.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	5.65	7.55	7.99	2.41	2.86	6.27	7.97	4.85	6.29	8.03	1.0	4.07
Merged-chr2-13597152-1	chr2	13597052	13597252	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22841.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	2.83	2.01	4.56	4.02	3.68	9.41	4.98	4.18	2.16	1.51	9.04	1.88
Merged-chr5-32755266-1	chr5	32755166	32755366	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-8924.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.62	3.02	10.27	1.61	8.18	2.51	4.32	5.24	5.9	12.55	2.01	3.45
Merged-chr10-45859331-1	chr10	45859231	45859431	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51627.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	1.62	2.01	10.27	2.41	5.32	1.25	2.99	8.78	3.34	1.0	8.54	4.39
Merged-chr13-108043749-1	chr13	108043649	108043849	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-725.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	4.85	2.26	5.13	2.82	2.05	3.76	4.32	3.79	2.95	1.51	1.0	4.7
Merged-chr13-99205070-2	chr13	99204942	99205142	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	20219.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	1.62	7.04	10.84	4.02	8.59	5.33	0.33	2.97	10.03	6.53	4.52	2.82
Merged-chr8-84953030-1	chr8	84952930	84953130	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357328, intron 5 of 6)	intron (NM_001357328, intron 5 of 6)	5040.0	NM_001357328	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	6.86	0.75	6.28	2.82	0.82	2.51	1.99	2.02	7.67	10.04	10.05	9.4
Merged-chr4-67477724-1	chr4	67477624	67477824	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	650173.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.81	0.25	0.0	4.83	2.05	3.76	3.99	4.12	1.38	0.0	0.0	0.0
Merged-chr6-115288402-1	chr6	115288302	115288502	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-36197.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	2.42	3.27	1.14	4.02	2.05	5.33	2.66	11.58	4.33	7.53	9.55	6.89
Merged-chr4-150025908-1	chr4	150025808	150026008	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16885.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.04	4.02	1.14	5.63	6.55	3.76	5.31	4.57	0.98	5.02	4.02	5.33
Merged-chr11-98217594-1	chr11	98217494	98217694	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	14289.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	4.04	6.29	13.12	2.41	4.5	6.9	2.99	3.93	5.31	6.03	2.51	5.95
Merged-chr12-91668038-1	chr12	91667938	91668138	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-77551.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	2.02	1.01	0.57	0.4	4.09	1.88	2.66	5.72	3.54	4.02	2.01	2.19
Merged-chr2-61631108-1	chr2	61631008	61631208	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_149323, exon 6 of 10)	non-coding (NR_149323, exon 6 of 10)	38011.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.63	3.52	7.42	1.61	3.68	1.88	5.31	5.94	4.33	1.0	9.55	2.51
Merged-chr15-80225970-1	chr15	80225870	80226070	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8110.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	8.88	6.04	10.27	5.63	4.5	11.29	6.31	5.24	6.29	8.54	8.04	7.83
Merged-chr18-89159492-1	chr18	89159392	89159592	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37935.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	3.63	4.02	7.42	3.22	3.27	4.39	1.33	2.02	8.85	11.55	7.54	2.19
Merged-chr7-34973260-1	chr7	34973160	34973360	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	60853.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	6.46	2.01	3.99	10.05	3.27	4.7	6.98	13.54	0.39	5.52	6.03	3.76
Merged-chr19-40596532-1	chr19	40596432	40596632	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026260)	TTS (NM_026260)	-8069.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	3.23	3.02	7.99	2.82	4.09	6.9	0.66	4.82	3.93	0.0	3.52	0.94
Merged-chr2-61815275-1	chr2	61815175	61815375	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10822.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	2.02	2.26	4.56	5.63	4.09	4.39	5.31	6.39	3.93	4.02	5.53	4.07
Merged-chr11-20466206-1	chr11	20466106	20466306	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77047.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.81	2.52	0.0	9.65	0.0	6.27	9.3	5.27	1.38	0.0	4.02	5.95
Merged-chr15-8279588-1	chr15	8279488	8279688	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110482.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	2.02	4.02	0.0	4.02	6.95	4.08	2.99	3.22	3.34	2.01	4.02	2.82
Merged-chr1-186261499-1	chr1	186261399	186261599	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144189.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	6.46	6.04	0.0	4.02	3.68	4.7	5.31	14.78	0.0	0.0	0.0	0.94
Merged-chr14-104473162-1	chr14	104473062	104473262	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-5163.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.83	8.8	1.14	6.44	6.55	5.33	6.98	3.06	3.93	8.54	10.05	7.52
Merged-chr13-99255021-1	chr13	99254921	99255121	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70198.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	2.42	3.52	0.0	2.41	2.45	2.2	4.32	5.64	4.13	3.01	8.54	2.51
Merged-chr2-177464821-2	chr2	177464719	177464919	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177568)	promoter-TSS (NM_001177568)	77.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	6.46	9.06	8.56	10.46	6.95	6.27	8.64	4.82	5.51	4.52	6.03	11.28
Merged-chr4-8689392-1	chr4	8689292	8689492	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1014.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.83	0.75	1.14	0.4	2.86	2.2	5.31	4.68	3.74	1.0	4.02	2.51
Merged-chr11-107676313-2	chr11	107676173	107676373	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38551.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	5.25	2.77	3.42	4.02	5.73	8.15	4.32	4.35	7.47	6.03	7.54	1.57
Merged-chr15-93358558-1	chr15	93358458	93358658	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21623.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	3.23	4.02	7.99	1.61	3.68	7.21	4.32	2.61	5.51	8.03	10.05	8.46
Merged-chr1-156681991-2	chr1	156681886	156682086	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145413, intron 7 of 7)	intron (NM_145413, intron 7 of 7)	-7647.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	8.08	7.55	7.42	8.85	4.09	10.66	3.99	5.02	4.13	5.02	1.51	2.51
Merged-chr16-92671624-1	chr16	92671524	92671724	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	25705.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.65	2.01	6.85	1.61	4.09	5.64	3.99	6.87	5.11	7.53	3.52	3.45
Merged-chr3-40711175-1	chr3	40711075	40711275	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178386, intron 1 of 5)	L1_Mus3|LINE|L1	2304.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.81	0.5	0.0	2.41	6.95	8.47	7.31	2.75	3.93	9.04	1.0	1.57
Merged-chr10-88368852-1	chr10	88368752	88368952	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10560.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.81	1.51	1.14	3.22	6.95	0.63	1.99	2.07	2.36	3.01	1.0	0.63
Merged-chr12-73692452-1	chr12	73692352	73692552	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107656.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.81	7.55	0.0	2.01	10.64	5.33	2.99	2.16	9.44	10.54	6.03	7.21
Merged-chr1-172473127-1	chr1	172473027	172473227	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2233.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	5.65	7.04	2.28	5.63	2.45	2.82	3.99	2.92	7.08	6.03	8.04	2.19
Merged-chr2-161109790-1	chr2	161109690	161109890	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-704.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	1.62	4.53	4.56	4.42	2.86	2.82	4.65	4.93	2.36	2.01	0.5	3.45
Merged-chr9-72955779-1	chr9	72955679	72955879	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3006.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	6.86	4.28	5.13	4.83	8.18	6.9	1.66	1.85	6.49	13.05	3.52	5.33
Merged-chr9-21101095-1	chr9	21100995	21101195	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9087.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	1.21	4.28	1.14	2.82	4.91	3.14	3.32	4.12	2.36	5.52	8.54	2.51
Merged-chr4-8545247-1	chr4	8545147	8545347	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	9603.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	1.21	3.27	0.0	5.23	4.91	2.2	0.33	5.24	3.93	2.51	4.52	4.07
Merged-chr3-98059266-1	chr3	98059166	98059366	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	45728.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.4	2.01	11.98	8.85	3.68	2.82	3.32	7.21	2.56	6.53	5.53	4.07
Merged-chr11-72961876-1	chr11	72961776	72961976	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016745, intron 1 of 21)	intron (NM_016745, intron 1 of 21)	707.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	7.27	4.28	2.28	3.22	4.91	2.2	1.33	4.57	4.13	8.54	5.53	4.7
Merged-chr8-12755527-1	chr8	12755427	12755627	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1489.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	2.83	1.01	4.56	1.61	9.82	5.64	2.66	5.1	5.7	6.03	10.55	5.01
Merged-chr7-29954988-1	chr7	29954888	29955088	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178384)	promoter-TSS (NM_178384)	-923.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	3.23	2.26	1.71	4.02	6.14	2.2	2.99	6.36	3.93	2.51	4.02	0.63
Merged-chr9-98955939-1	chr9	98955839	98956039	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_003248)	promoter-TSS (NR_003248)	332.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	2.42	1.51	6.85	7.24	2.05	4.39	2.99	6.06	5.51	1.51	1.0	4.07
Merged-chr19-5560100-1	chr19	5560000	5560200	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019935, intron 1 of 3)	CpG	475.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	3.23	1.76	0.57	0.0	5.73	6.27	7.64	0.56	1.97	4.02	0.5	3.45
Merged-chr19-32956534-1	chr19	32956434	32956634	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	198957.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.86	3.77	1.14	2.01	6.55	2.51	1.66	5.38	4.52	3.01	1.0	3.45
Merged-chr19-46708086-1	chr19	46707986	46708186	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020577, exon 3 of 11)	exon (NM_020577, exon 3 of 11)	643.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	4.44	2.52	0.0	6.03	5.32	6.59	10.3	4.37	3.74	13.05	3.01	3.13
Merged-chr4-3697210-1	chr4	3697110	3697310	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	(TTTTG)n|Simple_repeat|Simple_repeat	-17754.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.83	0.0	3.42	3.22	8.18	1.88	0.33	5.36	7.67	4.52	4.02	4.07
Merged-chrX-151116996-1	chrX	151116896	151117096	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-20453.0	NR_028392	69499.0	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	1.62	1.76	2.28	2.41	1.64	6.27	1.99	4.32	3.54	1.0	1.0	0.0
Merged-chr12-3778418-1	chr12	3778318	3778518	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-28562.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.08	4.78	8.56	1.21	9.41	6.27	5.65	15.06	5.31	10.54	8.04	7.52
Merged-chr19-44487439-1	chr19	44487339	44487539	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-6033.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	0.0	0.5	0.0	0.0	0.0	0.63	1.33	1.88	6.49	4.02	12.06	2.82
Merged-chrX-70425509-1	chrX	70425409	70425609	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30769.0	NM_001033807	619303.0	Mm.388146	NM_001033807	ENSMUSG00000073141	4930567H17Rik	-	RIKEN cDNA 4930567H17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14.55	3.51	10.05	5.64
Merged-chr14-50865552-1	chr14	50865452	50865652	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009351, intron 4 of 54)	MTD|LTR|ERVL-MaLR	5002.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	3.23	4.28	11.98	5.63	3.68	1.25	3.99	9.42	2.56	3.51	3.52	2.82
Merged-chr5-19724140-1	chr5	19724040	19724240	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-183378.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.81	1.01	1.14	3.22	0.82	4.39	4.98	2.64	8.65	13.05	9.55	6.89
Merged-chr10-81432331-1	chr10	81432231	81432431	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5158.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	4.44	2.01	1.14	5.63	5.32	5.02	4.98	2.07	8.06	6.03	12.56	5.33
Merged-chr5-115491293-1	chr5	115491193	115491393	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-6809.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.21	9.56	4.56	9.25	6.14	5.64	2.33	1.91	2.75	3.51	4.52	3.45
Merged-chr14-34518447-2	chr14	34518351	34518551	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030062, intron 1 of 2)	intron (NM_030062, intron 1 of 2)	4350.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	4.04	4.28	1.14	6.84	4.91	5.96	2.66	11.36	11.6	2.01	13.06	7.52
Merged-chr6-66357228-1	chr6	66357128	66357328	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84723.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	6.46	5.03	11.41	6.44	1.64	5.33	1.99	7.21	6.49	6.03	12.56	8.46
Merged-chr1-52099089-1	chr1	52098989	52099189	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308266, intron 17 of 24)	intron (NM_001308266, intron 17 of 24)	-20349.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	1.21	2.01	1.14	1.21	4.09	4.39	0.0	4.88	5.31	4.02	4.02	6.58
Merged-chr2-167269939-1	chr2	167269839	167270039	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29402.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	1.62	0.0	4.56	2.82	5.73	5.02	1.66	3.87	9.24	7.03	10.55	2.82
Merged-chr3-14959130-1	chr3	14959030	14959230	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12071.0	NR_040549	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	2.02	2.52	0.0	1.21	6.14	1.25	3.32	3.7	0.98	0.0	6.03	2.82
Merged-chr15-31452472-1	chr15	31452372	31452572	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	1217.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	2.42	1.26	5.7	0.8	4.91	1.57	6.64	5.8	2.95	2.01	0.0	3.76
Merged-chr5-54024855-1	chr5	54024755	54024955	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	MIRb|SINE|MIR	26332.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.85	2.52	1.14	3.22	3.27	8.78	4.65	4.65	2.56	3.51	2.51	2.82
Merged-chr9-70388990-1	chr9	70388890	70389090	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	16763.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	6.46	4.02	3.42	0.8	1.64	7.21	1.0	4.91	1.57	0.0	0.0	3.13
Merged-chr19-10486558-1	chr19	10486458	10486658	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3661.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	9.69	6.29	5.7	4.83	1.23	3.76	5.65	4.85	4.52	9.04	14.57	2.19
Merged-chr1-154788265-1	chr1	154788165	154788365	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62345.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.23	0.25	2.28	4.02	9.0	4.7	0.0	3.34	11.41	10.54	4.52	6.58
Merged-chr1-170820304-1	chr1	170820204	170820404	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 7 of 15)	RLTR26B_MM|LTR|ERVK	47467.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	3.63	3.52	2.28	5.23	6.95	6.9	1.33	6.28	4.92	2.51	4.02	0.94
Merged-chr6-148705877-2	chr6	148705781	148705981	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27881.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	5.65	5.79	3.42	3.62	5.73	3.14	1.33	9.39	9.24	8.54	10.55	4.07
Merged-chr3-79628305-1	chr3	79628205	79628405	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	462.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	12.52	11.32	10.84	6.03	11.86	23.52	8.64	15.11	14.55	20.08	7.54	16.92
Merged-chr11-94937091-3	chr11	94936963	94937163	+	589.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007742, intron 1 of 50)	intron (NM_007742, intron 1 of 50)	839.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	8.88	13.08	7.42	10.05	8.18	15.05	7.64	4.65	6.29	9.04	12.06	7.83
Merged-chr4-41050859-2	chr4	41050772	41050972	+	589.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2736.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	1.21	1.51	7.99	5.63	8.18	6.59	5.31	4.96	10.03	6.03	8.04	5.64
Merged-chr7-105396372-2	chr7	105396278	105396478	+	589.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242363, intron 1 of 12)	L2c|LINE|L2	3676.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	8.88	6.79	3.99	11.66	4.91	7.53	4.32	4.32	9.83	1.51	5.02	5.64
Merged-chr15-53221432-2	chr15	53221334	53221534	+	589.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	124749.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.65	6.04	12.55	11.26	2.45	2.2	5.31	6.39	1.97	3.01	2.51	3.13
Merged-chr13-22029322-2	chr13	22029226	22029426	+	589.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6317.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	7.67	7.04	13.69	10.86	6.95	15.37	7.64	5.58	6.29	3.51	5.02	5.33
Merged-chr2-127363108-2	chr2	127363043	127363243	+	589.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-143.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	6.46	6.04	5.7	1.21	2.45	8.47	5.31	3.45	5.51	6.03	6.03	5.64
Merged-chr19-10034929-1	chr19	10034829	10035029	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153790, exon 10 of 11)	non-coding (NR_153790, exon 10 of 11)	-6619.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	4.04	4.28	7.42	1.61	3.27	3.76	5.31	3.87	3.74	6.53	10.55	3.76
Merged-chr10-68137677-1	chr10	68137577	68137777	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	141049.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.04	2.01	3.42	1.21	3.27	5.33	3.99	5.3	1.97	4.52	3.52	0.63
Merged-chr7-126230552-1	chr7	126230452	126230652	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131046, intron 2 of 4)	RMER1C|Other|Other	7052.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	6.46	2.52	4.56	2.82	4.91	5.02	2.66	4.4	2.95	4.52	9.55	6.27
Merged-chr6-35134785-1	chr6	35134685	35134885	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	2.42	3.27	17.68	1.21	7.77	4.7	9.97	4.88	8.85	5.52	4.02	7.21
Merged-chr5-139792727-1	chr5	139792627	139792827	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	1191.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	1.21	5.03	2.85	0.8	3.68	4.08	3.99	4.99	8.65	2.01	5.02	5.01
Merged-chr8-39638251-1	chr8	39638151	39638351	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	4427.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.63	0.5	2.28	2.41	1.64	5.64	3.32	4.93	2.95	1.0	6.53	4.39
Merged-chr4-139382156-1	chr4	139382056	139382256	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160319, intron 1 of 105)	B3A|SINE|B2	1497.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	4.44	9.56	4.56	2.82	5.32	5.64	4.98	5.83	6.88	9.54	5.02	5.33
Merged-chr9-61985273-2	chr9	61985162	61985362	+	589.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-38463.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	8.88	5.28	3.99	5.63	11.05	8.78	5.31	4.37	7.47	8.54	3.01	8.46
Merged-chr2-49381205-3	chr2	49381107	49381307	+	589.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70279.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	12.52	4.78	9.7	7.24	6.14	8.15	2.99	13.43	10.82	13.05	10.55	6.27
Merged-chr16-30364835-2	chr16	30364744	30364944	+	589.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128096, intron 3 of 33)	intron (NM_001128096, intron 3 of 33)	23686.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.85	8.05	8.56	9.25	10.23	6.27	6.64	4.04	3.93	1.0	3.52	5.64
Merged-chr14-27230305-3	chr14	27230178	27230378	+	589.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 3 of 12)	MLT1N2|LTR|ERVL-MaLR	-7732.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.44	4.53	7.99	3.22	3.68	3.14	3.65	4.91	6.29	8.03	15.58	5.95
Merged-chr2-155538422-1	chr2	155538322	155538522	+	589.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	(TG)n|Simple_repeat|Simple_repeat	18508.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.0	3.02	0.0	0.0	0.0	0.0	0.0	0.0	7.67	8.54	0.5	7.52
Merged-chr18-32399714-3	chr18	32399623	32399823	+	589.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-21439.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.65	7.04	3.99	5.23	1.64	1.88	5.98	4.35	8.65	2.01	4.52	7.83
Merged-chr5-121602063-3	chr5	121601952	121602152	+	589.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178799, intron 8 of 10)	intron (NM_178799, intron 8 of 10)	-8228.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	8.88	9.81	3.42	0.4	16.77	6.59	3.32	4.01	6.88	9.04	8.54	3.76
Merged-chr2-128805486-2	chr2	128805355	128805555	+	589.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-12848.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.86	7.55	9.13	5.23	4.09	4.08	9.63	3.03	4.72	10.54	9.04	4.7
Merged-chr9-87043450-2	chr9	87043363	87043563	+	589.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359962, intron 8 of 14)	intron (NM_001359962, intron 8 of 14)	21434.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	4.44	1.51	1.14	0.0	2.45	9.09	5.65	4.91	8.65	8.03	9.04	9.08
Merged-chr19-34043294-3	chr19	34043217	34043417	+	589.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172837, intron 9 of 9)	MIRb|SINE|MIR	-24041.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	8.88	9.81	6.85	0.8	13.5	7.84	6.98	3.5	8.46	13.05	11.56	4.39
Merged-chr11-97629041-2	chr11	97628915	97629115	+	589.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175332, exon 1 of 1)	exon (NM_175332, exon 1 of 1)	701.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	11.31	6.79	5.13	6.84	4.09	5.02	7.64	3.22	9.83	9.04	1.0	8.14
Merged-chr2-27401729-2	chr2	27401618	27401818	+	589.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	ORR1A2-int|LTR|ERVL-MaLR	25890.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	10.09	6.29	7.99	4.02	6.95	9.41	1.33	3.67	7.08	6.03	7.03	3.76
Merged-chr2-45103528-1	chr2	45103428	45103628	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	6749.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.46	5.79	4.56	0.8	1.64	13.8	1.0	3.03	9.64	5.52	6.03	7.21
Merged-chr8-70901227-1	chr8	70901127	70901327	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-3784.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.81	1.76	18.25	5.23	0.82	0.63	0.0	0.25	8.46	5.02	4.52	7.52
Merged-chr12-100680226-1	chr12	100680126	100680326	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153587, intron 1 of 17)	RMER10B|LTR|ERVL	44894.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	2.42	2.01	0.0	5.63	3.27	4.7	6.31	5.1	7.87	5.02	5.53	5.01
Merged-chr10-60658372-1	chr10	60658272	60658472	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 2 of 68)	intron (NM_001252635, intron 2 of 68)	38118.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	2.02	3.77	10.27	3.62	0.82	5.02	3.99	6.2	3.15	2.01	2.51	3.76
Merged-chr17-34343524-1	chr17	34343424	34343624	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010381, intron 2 of 3)	intron (NM_010381, intron 2 of 3)	1121.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	2.83	10.06	7.42	4.83	0.0	0.63	1.0	0.5	0.2	0.0	1.0	0.31
Merged-chr5-136519215-1	chr5	136519115	136519315	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	46766.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	9.69	4.53	0.0	5.63	2.05	5.02	1.99	8.58	3.54	8.03	4.02	5.01
Merged-chr14-72533982-1	chr14	72533882	72534082	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176021.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.65	1.26	0.0	1.61	3.68	7.84	0.0	4.23	2.56	4.02	5.53	5.95
Merged-chr3-41182524-1	chr3	41182424	41182624	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99478.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	2.83	2.01	3.42	8.85	2.86	1.57	6.64	3.22	4.13	2.01	5.02	4.7
Merged-chr2-46372983-1	chr2	46372883	46373083	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	676378.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.02	2.01	0.0	0.8	0.82	8.15	0.0	0.0	9.24	12.05	1.0	0.63
Merged-chr8-34188761-1	chr8	34188661	34188861	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22049.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.81	2.77	0.0	2.01	0.0	3.14	1.66	3.22	10.23	6.03	13.06	4.07
Merged-chr11-67085660-2	chr11	67085565	67085765	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099635, intron 10 of 40)	intron (NM_001099635, intron 10 of 40)	7365.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	5.65	4.28	10.27	2.41	1.64	5.96	2.99	5.19	7.28	6.03	11.56	5.01
Merged-chr17-55931587-2	chr17	55931487	55931687	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13672.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	8.88	8.55	7.99	2.01	9.0	2.82	0.66	0.81	7.47	7.03	5.02	7.83
Merged-chr16-32200789-2	chr16	32200694	32200894	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20994.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	10.5	2.52	2.28	3.22	7.36	13.8	4.65	5.8	2.75	7.03	4.02	5.64
Merged-chr1-72307022-1	chr1	72306922	72307122	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-399.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	3.23	3.27	3.42	4.02	3.27	6.27	0.0	4.54	6.29	16.07	6.03	2.51
Merged-chr11-106663494-1	chr11	106663394	106663594	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50564.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	1.76	6.85	4.42	4.91	1.25	3.99	3.08	6.88	1.51	6.53	1.57
Merged-chr16-20724597-1	chr16	20724497	20724697	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289896, exon 6 of 6)	3' UTR (NM_001289896, exon 6 of 6)	6001.0	NM_001289896	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	4.85	7.04	2.28	0.4	7.36	6.27	1.66	4.82	4.92	7.03	12.06	4.39
Merged-chr4-139611720-1	chr4	139611620	139611820	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-11174.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	4.44	1.26	3.42	6.44	8.18	9.72	5.31	3.53	5.11	7.53	2.01	5.95
Merged-chr2-84783482-1	chr2	84783382	84783582	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-8053.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.81	3.77	2.85	1.21	5.32	2.51	2.99	1.57	8.85	4.02	11.05	8.46
Merged-chrX-151966764-2	chrX	151966675	151966875	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-35121.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	2.42	3.52	5.7	8.04	0.82	6.27	7.31	6.53	7.87	4.52	8.54	8.14
Merged-chr4-148060516-1	chr4	148060416	148060616	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010840)	TTS (NM_010840)	19327.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	1.21	4.28	5.13	0.8	3.68	5.02	2.66	4.96	4.92	2.51	19.09	7.52
Merged-chr19-45242586-2	chr19	45242490	45242690	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7354.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	12.92	7.55	0.57	6.44	4.91	6.59	7.31	5.38	3.15	4.02	4.52	1.57
Merged-chr15-38403670-1	chr15	38403570	38403770	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86877.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	4.44	1.51	3.99	3.22	4.09	4.08	3.99	3.17	1.77	5.02	3.52	3.13
Merged-chr10-19504128-1	chr10	19504028	19504228	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152785, intron 1 of 2)	intron (NR_152785, intron 1 of 2)	9485.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	6.46	3.27	5.7	2.82	4.91	5.96	10.63	5.16	6.88	3.01	5.53	2.51
Merged-chr15-36930561-2	chr15	36930488	36930688	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76814.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	9.69	7.04	0.0	10.05	5.73	5.33	5.65	3.31	3.34	4.02	8.04	2.19
Merged-chr15-41842181-2	chr15	41842080	41842280	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 12 of 17)	intron (NR_152565, intron 12 of 17)	11222.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	1.21	3.77	2.85	4.02	6.14	10.03	8.3	4.65	7.28	3.51	5.53	8.46
Merged-chr11-32613721-1	chr11	32613621	32613821	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 15 of 18)	intron (NM_009288, intron 15 of 18)	-28834.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	1.21	1.51	0.0	0.0	0.0	2.2	1.99	1.88	4.92	3.01	3.01	0.0
Merged-chr18-53256039-1	chr18	53255939	53256139	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	10377.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	11.71	9.31	9.7	8.45	9.82	6.59	6.64	5.83	6.69	4.02	9.55	6.89
Merged-chr2-150667258-1	chr2	150667158	150667358	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040331)	promoter-TSS (NR_040331)	-236.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	1.21	5.28	6.28	4.02	5.32	4.39	2.99	4.68	7.08	5.02	3.52	1.25
Merged-chr17-71214775-1	chr17	71214675	71214875	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	10121.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.65	1.01	7.99	4.02	8.59	5.02	2.66	2.38	10.23	9.54	6.53	6.27
Merged-chr15-99400871-1	chr15	99400771	99400971	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001171034, intron 2 of 10)	B3|SINE|B2	7652.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.63	6.79	9.13	3.62	4.91	5.33	1.66	3.9	1.97	5.52	3.52	5.33
Merged-chr8-83750049-2	chr8	83749959	83750159	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-8748.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.04	4.78	3.99	5.63	2.86	7.84	6.98	3.64	10.82	3.01	12.56	7.83
Merged-chr6-146525695-1	chr6	146525595	146525795	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23472.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.04	0.75	1.14	1.61	0.82	0.63	3.65	3.73	0.2	0.5	1.0	0.63
Merged-chr14-13997965-1	chr14	13997865	13998065	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-14526.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	5.65	2.77	12.55	5.23	4.5	0.94	3.32	4.85	5.31	4.02	6.03	3.45
Merged-chr8-71923535-1	chr8	71923435	71923635	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133358, intron 1 of 3)	intron (NM_133358, intron 1 of 3)	710.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	1.62	1.51	3.42	2.01	5.73	6.59	1.99	6.08	4.33	6.53	8.04	5.64
Merged-chr13-34644585-1	chr13	34644485	34644685	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	8096.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	4.85	1.01	0.0	3.22	6.95	3.76	9.3	4.32	0.79	1.51	0.5	2.51
Merged-chr17-87215594-2	chr17	87215506	87215706	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20664.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	4.85	2.01	3.99	10.05	5.32	6.27	3.65	7.99	4.52	11.55	15.58	8.77
Merged-chr5-135982614-1	chr5	135982514	135982714	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011776, intron 1 of 7)	intron (NM_011776, intron 1 of 7)	2509.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	7.67	5.79	2.85	6.44	3.27	2.82	4.98	2.92	5.11	9.04	5.53	3.76
Merged-chr5-32976694-1	chr5	32976594	32976794	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025426, intron 39 of 42)	intron (NM_001025426, intron 39 of 42)	-42122.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	1.62	4.02	4.56	4.83	6.14	0.31	1.99	5.44	0.79	4.02	3.52	2.19
Merged-chr16-11211549-1	chr16	11211449	11211649	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_038156, intron 1 of 2)	RLTR48A|LTR|ERV1	8166.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	8.08	5.28	7.42	11.26	4.91	5.02	4.98	3.53	2.95	7.03	4.52	8.46
Merged-chr6-124990773-1	chr6	124990673	124990873	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-5947.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.65	1.76	3.99	3.22	4.5	2.2	4.65	2.97	3.93	6.03	0.5	3.45
Merged-chr6-125302313-1	chr6	125302213	125302413	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11572.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	4.44	3.02	5.13	3.22	6.95	4.7	1.33	6.17	4.13	7.03	10.05	5.01
Merged-chr2-102804305-1	chr2	102804205	102804405	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57545.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	5.25	4.78	1.71	2.82	0.82	2.82	9.63	3.9	10.42	10.04	3.01	4.7
Merged-chr15-25428727-1	chr15	25428627	25428827	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	14535.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	2.02	3.52	2.85	4.02	2.45	9.09	1.99	4.71	8.06	4.52	3.52	5.33
Merged-chr17-48320763-1	chr17	48320663	48320863	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4601.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	2.02	0.75	0.0	2.01	2.45	7.21	1.66	4.6	2.95	2.01	2.51	1.25
Merged-chr9-123933857-1	chr9	123933757	123933957	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34835.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	2.42	3.02	7.99	1.61	6.55	5.02	2.33	5.69	4.52	2.01	3.01	3.13
Merged-chr15-64000172-1	chr15	64000072	64000272	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	MIR|SINE|MIR	-2106.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.83	2.52	0.0	2.41	2.05	4.39	2.99	7.54	3.74	1.51	3.01	0.94
Merged-chr16-43354697-1	chr16	43354597	43354797	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	MTD|LTR|ERVL-MaLR	65499.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.65	7.04	4.56	4.83	8.18	8.78	3.99	5.21	6.88	2.01	5.53	1.25
Merged-chr6-120493087-1	chr6	120492987	120493187	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	720.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	4.04	4.02	1.14	2.82	4.09	5.02	5.98	5.16	1.57	2.51	6.03	1.57
Merged-chr13-40843551-1	chr13	40843451	40843651	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16217.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.85	3.27	0.0	1.61	3.27	5.64	4.32	4.91	7.08	8.54	6.53	3.45
Merged-chr7-64342259-1	chr7	64342159	64342359	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	31836.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	4.44	0.25	1.71	0.8	9.82	7.53	12.95	4.51	2.56	4.52	16.08	3.13
Merged-chr1-37559530-1	chr1	37559430	37559630	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18514.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	1.21	5.79	6.85	1.61	9.82	15.99	6.31	3.36	11.8	10.04	6.53	3.45
Merged-chr3-146656062-1	chr3	146655962	146656162	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4745.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.81	1.01	0.0	5.63	4.09	5.02	0.66	4.65	4.13	6.03	10.55	5.64
Merged-chr6-71931857-1	chr6	71931757	71931957	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	22804.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.81	3.77	2.28	2.82	4.09	1.88	5.31	6.28	3.74	3.01	7.03	3.13
Merged-chr6-88926995-1	chr6	88926895	88927095	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24744.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	1.01	2.85	1.21	4.91	0.63	4.98	5.05	1.57	3.01	2.51	0.0
Merged-chr9-116089046-1	chr9	116088946	116089146	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	86317.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.83	5.79	2.28	2.01	7.77	0.94	4.98	5.07	2.95	5.02	6.03	1.57
Merged-chr9-44288255-1	chr9	44288155	44288355	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_138955)	promoter-TSS (NM_138955)	-11.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	5.65	6.79	0.0	2.82	6.55	4.08	2.99	4.07	1.57	1.0	10.05	5.95
Merged-chr7-142038031-1	chr7	142037931	142038131	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	22822.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	1.62	3.27	5.13	0.8	3.68	3.45	6.64	4.07	3.74	1.51	8.04	5.64
Merged-chr19-11368523-1	chr19	11368423	11368623	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6965.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	1.21	0.25	5.7	4.02	9.41	5.02	4.32	4.6	2.36	4.02	4.52	5.95
Merged-chr17-34239335-1	chr17	34239235	34239435	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	430.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.0	3.02	1.71	0.8	3.68	2.82	0.66	1.54	11.01	9.04	6.03	5.33
Merged-chr12-56525559-1	chr12	56525459	56525659	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045082, intron 1 of 6)	intron (NR_045082, intron 1 of 6)	3861.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0.0	0.0	0.0	0.0	0.41	0.0	0.0	0.0	6.29	3.51	10.05	6.89
Merged-chr4-127168487-1	chr4	127168387	127168587	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-717.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	3.63	5.28	5.7	2.41	6.55	7.53	11.63	3.62	4.52	5.52	2.51	8.46
Merged-chr6-55057050-1	chr6	55056950	55057150	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_180678, intron 7 of 16)	MTC|LTR|ERVL-MaLR	19049.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.0	0.75	0.57	1.61	0.0	0.0	0.0	0.08	8.65	3.01	12.56	6.89
Merged-chr4-95385871-1	chr4	95385771	95385971	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-171636.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	1.21	0.5	1.14	0.8	6.14	2.51	3.65	4.82	2.75	6.53	6.53	4.7
Merged-chr2-76673841-2	chr2	76673727	76673927	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-729.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	6.46	9.31	1.14	5.23	6.95	5.64	5.65	4.18	13.77	4.02	10.05	5.01
Merged-chr10-41933603-1	chr10	41933503	41933703	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	PB1D9|SINE|Alu	46164.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	1.62	3.27	1.71	2.82	7.77	0.94	3.65	2.21	6.1	8.03	9.04	2.51
Merged-chr18-60371933-1	chr18	60371833	60372033	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-1683.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	2.83	2.77	3.99	10.46	7.36	1.57	10.96	3.0	5.31	4.02	2.01	2.82
Merged-chr17-71184052-1	chr17	71183952	71184152	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	74.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	11.31	11.07	5.7	4.83	5.73	6.9	8.97	5.07	9.05	16.07	10.55	10.34
Merged-chr11-119920028-1	chr11	119919928	119920128	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001085498)	TTS (NM_001085498)	6218.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	11.31	4.53	2.28	4.02	1.64	9.09	2.66	4.57	4.33	4.52	5.02	6.27
Merged-chr4-94901820-1	chr4	94901720	94901920	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27023.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.81	3.52	3.42	2.01	1.64	4.39	1.66	4.65	9.24	5.02	7.54	3.45
Merged-chr13-37477880-1	chr13	37477780	37477980	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132535.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.21	0.5	0.0	0.0	1.64	1.25	0.66	1.29	8.26	3.51	10.05	4.07
Merged-chr5-124027477-1	chr5	124027377	124027577	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	4783.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	1.21	2.01	0.57	0.0	2.86	1.25	3.65	1.32	7.47	1.51	5.02	8.46
Merged-chr5-145115888-1	chr5	145115788	145115988	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	BC1_Mm|scRNA|scRNA	1632.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	8.48	8.3	4.56	1.21	3.27	12.54	5.31	2.36	4.72	4.52	3.01	5.33
Merged-chr6-140619335-1	chr6	140619235	140619435	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3328.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.44	3.52	2.28	0.8	4.91	3.14	4.98	3.79	5.51	1.0	5.02	1.57
Merged-chr14-51902991-1	chr14	51902891	51903091	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8998.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	6.46	2.26	3.42	3.62	10.23	3.45	6.98	4.74	2.95	3.01	9.55	5.64
Merged-chr2-30328843-1	chr2	30328743	30328943	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198304, intron 24 of 43)	ID_B1|SINE|B4	30473.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	4.85	5.53	10.84	8.85	2.86	1.57	5.65	8.27	3.15	0.5	0.5	3.76
Merged-chr10-108190206-1	chr10	108190106	108190306	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	ID4_|SINE|ID	27806.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	5.25	4.53	6.85	2.01	5.73	5.33	2.33	4.01	6.49	1.0	15.58	8.46
Merged-chr11-70588767-2	chr11	70588679	70588879	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	25898.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	2.02	2.52	10.84	5.63	9.41	6.27	1.66	4.04	11.41	12.05	2.01	0.0
Merged-chr8-106601253-1	chr8	106601153	106601353	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2097.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	4.04	5.28	6.85	6.44	2.05	3.14	3.32	4.18	1.97	7.03	1.0	2.51
Merged-chr6-65144253-1	chr6	65144153	65144353	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	477.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	7.67	5.53	9.13	1.61	9.82	5.96	3.65	9.2	12.39	6.03	6.53	10.65
Merged-chr7-55843469-1	chr7	55843369	55843569	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	1398.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	7.27	3.52	3.99	0.8	3.27	2.82	1.99	2.55	13.37	6.53	2.51	5.01
Merged-chr4-135438111-1	chr4	135438011	135438211	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4306.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	7.67	5.03	3.42	11.26	4.91	5.96	2.33	4.54	5.11	4.52	12.56	3.76
Merged-chr10-56163162-1	chr10	56163062	56163262	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033385, intron 15 of 32)	intron (NM_001033385, intron 15 of 32)	56245.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	4.04	1.26	0.0	3.22	1.64	2.82	4.98	4.65	9.83	9.04	14.07	6.89
Merged-chr10-19558483-1	chr10	19558383	19558583	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33466.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.23	4.28	2.28	2.41	4.91	7.84	7.97	4.46	5.7	5.02	1.0	0.63
Merged-chr7-5047486-3	chr7	5047403	5047603	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-4029.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	5.65	8.05	6.85	4.83	2.45	5.02	3.65	4.99	13.96	11.55	10.05	5.01
Merged-chr2-27756988-1	chr2	27756888	27757088	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	46405.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.44	3.02	5.13	2.82	4.5	4.08	5.31	4.21	3.34	7.03	6.53	6.27
Merged-chr5-137652671-1	chr5	137652571	137652771	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303271, intron 11 of 12)	intron (NM_001303271, intron 11 of 12)	-6957.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	2.02	1.26	0.57	0.8	1.64	4.39	1.33	4.29	7.28	12.05	11.05	5.64
Merged-chr14-58075056-1	chr14	58074956	58075156	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013518, intron 1 of 2)	CpG	2370.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	2.83	0.25	4.56	1.21	4.09	2.82	3.99	6.08	4.52	7.53	3.52	5.95
Merged-chr1-88256413-1	chr1	88256313	88256513	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001281466, exon 36 of 42)	exon (NM_001281466, exon 36 of 42)	12995.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	3.23	1.76	2.85	3.22	2.45	0.94	1.99	3.42	7.28	3.51	1.51	5.64
Merged-chr13-107893562-1	chr13	107893462	107893662	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3498.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.81	5.28	2.85	0.8	3.68	4.08	5.31	1.21	6.49	4.52	6.03	1.57
Merged-chr11-78710194-1	chr11	78710094	78710294	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12769.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	3.23	3.27	2.85	3.62	4.09	2.51	1.99	5.19	11.8	6.53	12.06	3.13
Merged-chr2-26300953-1	chr2	26300853	26301053	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6396.0	NM_177841	329366.0	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	5.25	3.52	6.28	1.21	3.68	5.33	1.0	3.79	4.52	3.01	7.03	3.45
Merged-chr8-13163968-2	chr8	13163870	13164070	+	588.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	MTC|LTR|ERVL-MaLR	4809.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.23	0.5	4.56	4.02	5.32	3.76	4.65	4.88	10.23	10.04	12.06	5.64
Merged-chr5-92099601-2	chr5	92099516	92099716	+	588.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15872.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.06	4.53	8.56	4.42	3.68	6.59	6.31	5.19	9.83	11.55	9.55	6.58
Merged-chr17-34605143-2	chr17	34605055	34605255	+	588.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-706.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	8.48	6.29	5.13	2.82	7.36	7.53	7.31	1.23	6.29	4.52	3.01	5.64
Merged-chr5-135689920-2	chr5	135689816	135690016	+	588.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	771.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.65	5.79	9.13	0.4	6.14	4.39	4.98	5.58	7.87	9.04	2.01	5.64
Merged-chr13-35947565-2	chr13	35947528	35947728	+	588.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20278.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	7.27	3.77	4.56	4.42	6.55	5.33	4.65	3.48	2.56	3.51	5.53	4.07
Merged-chr13-44507248-3	chr13	44507146	44507346	+	588.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67519.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.65	6.79	11.41	4.02	9.0	15.68	7.31	4.93	10.23	9.54	2.01	6.27
Merged-chr12-80810216-1	chr12	80810116	80810316	+	588.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	19684.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.27	2.26	6.85	0.4	3.27	1.57	2.33	3.03	9.64	10.54	7.03	8.14
Merged-chr3-122474295-1	chr3	122474195	122474395	+	588.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-9274.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	2.01	3.42	1.21	9.0	5.02	4.32	5.69	2.75	0.5	2.51	2.19
Merged-chr18-67610525-2	chr18	67610433	67610633	+	588.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	30822.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	7.27	7.04	9.13	4.42	3.68	3.14	1.66	5.44	13.37	9.54	6.03	2.19
Merged-chr9-53692113-2	chr9	53692014	53692214	+	588.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	B2_Mm1a|SINE|B2	14118.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	5.25	9.06	7.42	4.02	11.45	4.7	7.64	1.21	9.83	9.04	9.04	8.77
Merged-chrX-20363335-2	chrX	20363223	20363423	+	588.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1158.0	NM_133669	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	5.65	5.28	9.13	8.85	4.09	6.59	3.99	9.84	8.85	8.54	6.03	3.45
Merged-chr17-56357724-2	chr17	56357595	56357795	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172132, intron 5 of 22)	intron (NM_172132, intron 5 of 22)	31645.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	5.25	3.27	3.42	2.01	2.45	4.08	1.66	4.26	7.08	2.51	3.52	9.4
Merged-chr3-15876910-1	chr3	15876810	15877010	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-28423.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	2.42	3.02	0.0	5.63	9.82	6.27	3.99	3.98	6.69	1.0	1.0	4.7
Merged-chr16-55641172-2	chr16	55641063	55641263	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	146432.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	1.21	5.03	10.27	1.61	6.95	10.98	6.64	2.78	10.62	8.03	6.03	6.58
Merged-chr17-28769674-2	chr17	28769572	28769772	+	588.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011950, intron 1 of 11)	intron (NM_011950, intron 1 of 11)	355.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	9.69	7.8	6.85	3.22	6.55	5.02	0.33	4.18	4.72	4.02	5.53	5.95
Merged-chr6-142715648-1	chr6	142715548	142715748	+	588.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13374.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	3.23	2.01	0.0	2.82	5.73	3.14	3.99	15.28	11.6	8.03	12.06	7.21
Merged-chr10-19491970-1	chr10	19491870	19492070	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2673.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	2.83	1.51	0.57	4.02	4.91	3.45	5.31	4.21	5.51	4.52	7.03	2.82
Merged-chr18-57400886-1	chr18	57400786	57400986	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4529.0	NR_152223	100503007.0	Mm.238087	NR_152223		Gm19500	-	predicted gene, 19500	ncRNA	8.88	4.53	5.7	6.44	7.36	6.9	2.99	5.55	2.75	8.03	4.52	2.51
Merged-chr8-106198967-1	chr8	106198867	106199067	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001357382)	TTS (NM_001357382)	11966.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	5.25	8.8	5.7	8.04	10.64	5.96	4.98	5.64	6.1	8.54	5.02	3.45
Merged-chr6-48739165-1	chr6	48739065	48739265	+	588.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175860, intron 1 of 2)	intron (NM_175860, intron 1 of 2)	118.0	NM_008376	16205.0	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	6.06	6.29	10.84	6.84	0.41	1.25	1.33	1.96	0.59	0.0	4.52	4.39
Merged-chr12-84288682-2	chr12	84288583	84288783	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252625, intron 1 of 9)	B3|SINE|B2	3387.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	3.23	2.52	2.85	4.42	5.32	1.57	1.99	6.22	11.6	12.05	8.04	7.21
Merged-chr10-78139420-1	chr10	78139320	78139520	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30348.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	1.62	2.77	0.57	2.41	4.5	7.21	5.65	4.71	3.34	6.03	6.03	2.51
Merged-chr11-69689221-2	chr11	69689112	69689312	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-3658.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	5.25	3.02	7.42	3.62	10.23	4.39	3.65	4.23	5.51	4.02	12.56	7.83
Merged-chr11-83272224-2	chr11	83272147	83272347	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14479.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	7.27	4.53	0.57	7.64	2.86	12.54	1.99	4.32	6.88	8.03	3.52	4.39
Merged-chr10-81406813-2	chr10	81406737	81406937	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 6 of 8)	intron (NM_026756, intron 6 of 8)	-2738.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	2.83	3.27	2.28	1.21	2.45	4.39	0.33	4.43	2.75	2.51	6.53	8.77
Merged-chr4-155571605-2	chr4	155571506	155571706	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355599, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	7791.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	2.42	1.01	11.98	0.0	2.45	7.84	7.97	5.3	8.06	11.55	13.06	6.58
Merged-chr10-13948383-1	chr10	13948283	13948483	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17692.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.42	2.77	2.28	4.02	3.27	5.96	3.99	4.01	8.06	5.02	5.02	3.45
Merged-chr3-79202398-2	chr3	79202317	79202517	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10502.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.46	3.52	11.98	7.24	3.68	5.02	1.99	7.82	4.92	4.52	7.54	6.58
Merged-chr6-54034618-2	chr6	54034523	54034723	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5309.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.63	6.29	3.42	3.22	6.55	3.14	3.32	4.71	11.01	8.03	10.05	6.89
Merged-chr2-58189130-1	chr2	58189030	58189230	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	25156.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	1.26	2.28	0.8	7.77	5.33	5.31	3.48	5.9	4.52	9.04	4.39
Merged-chr9-106319313-1	chr9	106319213	106319413	+	588.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	38252.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.0	2.01	5.13	6.03	3.68	1.25	3.65	2.1	8.85	6.03	11.56	9.08
Merged-chr8-90793889-1	chr8	90793789	90793989	+	588.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34946.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.25	4.78	2.28	8.04	6.14	5.64	6.64	4.26	5.7	3.01	4.52	5.64
Merged-chr9-75361950-3	chr9	75361869	75362069	+	588.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14211.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	9.69	8.55	3.99	8.45	3.27	4.7	11.63	4.68	5.7	7.03	6.03	3.13
Merged-chr5-121388208-2	chr5	121388123	121388323	+	588.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2608.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.88	4.78	5.13	6.44	7.77	3.14	3.32	5.24	9.24	9.54	8.04	6.89
Merged-chr5-32742307-2	chr5	32742201	32742401	+	588.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347332, exon 3 of 9)	5' UTR (NM_001347332, exon 3 of 9)	4041.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.62	7.55	4.56	4.83	5.73	5.02	0.66	4.88	9.64	4.52	13.57	6.89
Merged-chr10-23786183-1	chr10	23786083	23786283	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037680)	promoter-TSS (NR_037680)	-362.0	NR_037681	100529075.0		NR_037681	ENSMUSG00000080486	Snord100	MBII-429|Z51	small nucleolar RNA, C/D box 100	snoRNA	2.42	9.81	0.0	5.63	4.5	4.7	4.32	4.77	4.13	1.51	5.53	1.25
Merged-chr2-152821209-1	chr2	152821109	152821309	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	7280.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	3.23	5.79	0.57	2.41	1.64	1.25	5.31	3.81	2.75	2.51	0.0	1.57
Merged-chr10-34215823-1	chr10	34215723	34215923	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8272.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.06	6.29	3.99	5.23	4.5	4.7	2.99	2.86	8.26	4.52	10.05	6.27
Merged-chr2-172831296-1	chr2	172831196	172831396	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109025.0	NM_007557	12162.0	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	4.04	3.02	2.85	6.03	4.09	2.2	1.99	6.14	3.34	0.5	6.03	10.65
Merged-chr11-96784991-1	chr11	96784891	96785091	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4145.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	1.62	3.02	2.28	1.21	8.18	5.33	1.66	3.76	7.67	3.01	8.04	3.45
Merged-chr5-105711622-1	chr5	105711522	105711722	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	10812.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.65	3.77	7.99	6.44	5.32	0.63	3.99	7.79	6.69	3.01	7.03	7.52
Merged-chr8-105305789-2	chr8	105305669	105305869	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_148952)	TTS (NM_148952)	168.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	6.46	5.03	3.99	4.02	9.0	1.57	3.32	2.92	8.46	8.54	9.04	4.7
Merged-chr9-21032085-1	chr9	21031985	21032185	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	47.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	5.65	7.8	1.14	3.62	5.32	6.27	4.65	3.31	9.64	7.53	8.04	5.95
Merged-chr8-110950491-1	chr8	110950391	110950591	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009179, intron 1 of 6)	intron (NM_009179, intron 1 of 6)	30626.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	1.62	2.26	0.0	0.0	3.68	3.76	7.31	4.93	0.59	0.5	3.01	1.88
Merged-chr2-116063065-1	chr2	116062965	116063165	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136072, intron 2 of 12)	intron (NM_001136072, intron 2 of 12)	1554.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.81	0.25	2.28	1.61	0.82	1.88	4.65	2.41	1.57	6.03	0.0	0.0
Merged-chr5-30851005-1	chr5	30850905	30851105	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-10802.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	5.65	3.52	3.42	4.83	2.05	2.82	2.66	5.55	6.1	5.52	11.05	2.82
Merged-chr15-8682719-1	chr15	8682619	8682819	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	28088.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.04	1.76	9.13	2.41	4.91	4.7	2.33	3.87	8.46	8.54	5.53	5.01
Merged-chr9-32211277-1	chr9	32211177	32211377	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12972.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	2.42	2.77	3.42	2.01	7.77	0.94	0.33	5.07	3.54	4.52	8.54	10.96
Merged-chr4-55353190-1	chr4	55353090	55353290	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	3148.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.23	4.53	2.28	2.41	5.32	6.9	2.66	5.24	10.82	7.03	8.04	4.39
Merged-chr16-30309650-1	chr16	30309550	30309750	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1131.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	6.46	7.04	2.85	8.45	3.68	3.45	3.65	5.97	2.75	3.51	8.04	4.07
Merged-chr18-25540647-1	chr18	25540547	25540747	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	139101.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.42	0.5	2.28	4.83	6.55	0.31	8.64	5.33	2.75	0.5	3.01	1.25
Merged-chr1-184610470-1	chr1	184610370	184610570	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52779.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.23	3.02	0.0	1.21	2.05	2.51	3.65	6.2	10.82	3.51	8.04	1.57
Merged-chr17-5688367-1	chr17	5688267	5688467	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	-110290.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.23	5.79	3.42	10.86	1.64	9.09	4.65	2.86	8.65	4.02	10.05	5.01
Merged-chr13-99230734-1	chr13	99230634	99230834	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 2 of 4)	intron (NM_001004149, intron 2 of 4)	45911.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.25	1.51	5.7	4.83	0.82	1.88	4.32	7.91	4.33	3.01	13.06	2.19
Merged-chr17-87265134-1	chr17	87265034	87265234	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	813.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.23	1.76	3.42	2.41	4.91	4.7	2.66	8.33	4.92	9.04	8.54	6.58
Merged-chr9-115492659-1	chr9	115492559	115492759	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	110840.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	1.62	2.01	0.57	2.82	2.45	0.63	0.0	1.82	7.87	3.51	11.05	10.02
Merged-chr1-54690798-1	chr1	54690698	54690898	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-133114.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.81	3.52	2.85	4.02	4.91	1.88	2.99	5.47	6.1	0.0	5.02	4.07
Merged-chr2-93477660-2	chr2	93477556	93477756	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14706.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	6.46	6.79	0.0	0.8	6.55	3.45	7.64	3.98	6.88	3.51	7.54	3.13
Merged-chr15-73062513-1	chr15	73062413	73062613	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1309.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.81	0.25	0.0	0.8	2.86	4.39	1.0	1.74	5.7	3.01	11.05	6.27
Merged-chr1-36129966-1	chr1	36129866	36130066	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14347.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	3.63	1.01	0.0	0.0	5.73	2.2	1.33	4.4	2.75	1.51	2.51	2.19
Merged-chr1-40786275-1	chr1	40786175	40786375	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172499, intron 2 of 5)	intron (NM_172499, intron 2 of 5)	4382.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0.81	0.5	2.28	0.4	1.64	0.94	4.98	4.82	0.39	0.0	3.01	1.25
Merged-chr10-31544381-1	chr10	31544281	31544481	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 1 of 5)	L1M5|LINE|L1	65344.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	4.04	1.76	2.85	6.84	5.73	1.57	4.65	4.85	0.98	0.0	3.01	0.31
Merged-chr7-78924501-1	chr7	78924401	78924601	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10266.0	NM_001113527	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	3.63	1.76	0.57	2.01	4.5	5.64	4.32	3.5	4.92	4.02	7.54	3.45
Merged-chr15-66286692-1	chr15	66286592	66286792	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_152923)	promoter-TSS (NM_152923)	-468.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	4.44	3.77	6.85	4.42	3.27	6.59	1.99	5.47	2.95	3.01	0.0	0.94
Merged-chr11-77463033-1	chr11	77462933	77463133	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_139130)	promoter-TSS (NM_139130)	-880.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	8.08	5.79	1.14	8.85	8.18	5.96	12.95	1.35	6.1	2.51	6.53	4.39
Merged-chr4-99062179-2	chr4	99062063	99062263	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 11 of 47)	L1MB8|LINE|L1	31209.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	6.86	3.52	3.42	2.82	4.91	6.9	8.64	4.07	8.46	11.55	7.54	7.21
Merged-chr14-118950319-1	chr14	118950219	118950419	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	12387.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	1.21	2.52	1.14	0.0	4.91	4.7	1.33	5.92	5.11	9.04	4.02	3.13
Merged-chr3-27317701-1	chr3	27317601	27317801	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009425, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	624.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	2.42	1.01	0.0	4.02	4.09	1.88	3.65	3.87	10.03	5.02	3.52	5.33
Merged-chr16-55933817-1	chr16	55933717	55933917	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159366, intron 1 of 4)	intron (NM_001159366, intron 1 of 4)	1031.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.4	2.26	4.56	2.82	6.95	0.0	2.99	4.68	8.65	3.01	3.52	5.33
Merged-chr15-99771623-1	chr15	99771523	99771723	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028015, intron 1 of 9)	intron (NM_028015, intron 1 of 9)	892.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	5.25	2.26	4.56	3.22	2.86	4.08	5.31	6.03	4.13	5.02	3.01	1.88
Merged-chrX-167049899-1	chrX	167049799	167049999	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20471.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	8.08	1.51	6.85	2.01	5.32	1.88	4.65	4.4	6.49	3.01	3.52	6.27
Merged-chr16-25597613-1	chr16	25597513	25597713	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-86152.0	NM_001127259	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	1.21	0.0	0.0	0.0	1.64	2.82	4.65	2.38	11.21	2.51	9.55	5.95
Merged-chr17-27961939-1	chr17	27961839	27962039	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	52633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	2.83	1.26	5.7	2.41	4.5	7.84	0.33	4.54	1.57	1.51	3.01	1.25
Merged-chr10-12956013-1	chr10	12955913	12956113	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	8246.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	1.62	2.01	0.57	4.02	9.82	13.8	1.33	4.79	19.28	7.53	7.54	3.13
Merged-chr5-117149224-1	chr5	117149124	117149324	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15636.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.62	0.0	0.0	3.22	2.86	3.45	0.0	5.55	3.34	5.52	4.52	2.82
Merged-chrY-897571-1	chrY	897471	897671	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011419)	promoter-TSS (NM_011419)	-217.0	NM_011419	20592.0	Mm.262676	NM_011419	ENSMUSG00000056673	Kdm5d	HY|Jarid1d|Smcy	lysine (K)-specific demethylase 5D	protein-coding	4.04	2.77	4.56	0.8	3.68	3.76	6.31	4.12	8.46	9.04	10.05	5.64
Merged-chr12-99240262-1	chr12	99240162	99240362	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-77454.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	5.65	2.77	6.28	11.26	4.91	2.82	4.65	4.37	3.54	3.51	9.55	5.01
Merged-chr5-30652386-1	chr5	30652286	30652486	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	RMER17C|LTR|ERVK	4447.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	3.63	3.52	3.42	0.8	4.09	5.33	1.66	5.27	3.54	6.53	2.01	2.51
Merged-chr12-35828031-1	chr12	35827931	35828131	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-97590.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.23	1.76	0.0	2.82	6.14	3.76	5.98	4.21	4.92	1.51	7.54	6.89
Merged-chr5-117424226-1	chr5	117424126	117424326	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	10224.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.83	4.53	2.85	4.83	4.09	6.9	3.65	3.79	6.49	3.01	10.55	1.88
Merged-chr10-127746430-1	chr10	127746330	127746530	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5368.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	8.48	2.77	0.0	10.46	6.14	10.03	4.32	5.1	2.75	8.54	12.56	13.16
Merged-chr10-128673228-1	chr10	128673128	128673328	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173733, intron 1 of 3)	intron (NM_173733, intron 1 of 3)	690.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	4.85	4.02	1.71	0.4	8.18	1.88	3.99	4.46	8.46	4.52	5.53	1.88
Merged-chr12-102377893-1	chr12	102377793	102377993	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61920.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.83	1.01	1.71	2.41	2.86	3.45	8.64	5.72	6.1	6.03	5.53	2.82
Merged-chr14-49022443-2	chr14	49022311	49022511	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207214, intron 13 of 17)	L2a|LINE|L2	-44138.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	2.83	3.02	5.13	6.44	5.32	2.51	6.98	4.74	2.56	12.55	7.54	7.21
Merged-chr3-89385242-1	chr3	89385142	89385342	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	2429.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	11.31	3.27	6.85	6.44	5.32	5.33	4.32	5.05	7.28	5.02	6.53	9.4
Merged-chr1-152634484-1	chr1	152634384	152634584	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346118, intron 2 of 18)	(CAAAAA)n|Simple_repeat|Simple_repeat	-9267.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.85	7.8	5.7	9.25	5.32	4.39	6.31	3.28	6.88	3.01	6.53	1.25
Merged-chr3-20003017-1	chr3	20002917	20003117	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 15 of 16)	B2_Mm1t|SINE|B2	32293.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	2.83	3.02	4.56	2.41	4.5	4.39	4.65	1.65	7.47	7.53	9.04	2.51
Merged-chr7-142375567-1	chr7	142375467	142375667	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_009983)	TTS (NM_009983)	-1821.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.86	2.01	4.56	8.04	3.27	0.0	0.0	0.87	1.77	1.0	1.0	4.07
Merged-chr4-83235725-1	chr4	83235625	83235825	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	88464.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	3.52	3.42	0.8	0.0	0.94	5.31	3.98	6.29	4.02	3.01	4.7
Merged-chrX-57303675-1	chrX	57303575	57303775	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358573, intron 2 of 20)	intron (NM_001358573, intron 2 of 20)	22926.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	3.23	1.51	1.14	2.01	9.0	5.96	4.65	5.52	4.13	3.51	8.54	7.83
Merged-chr12-31610517-1	chr12	31610417	31610617	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007530, intron 5 of 6)	intron (NM_007530, intron 5 of 6)	24080.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	2.42	2.52	4.56	3.62	1.64	5.33	4.98	6.76	7.08	2.51	6.53	8.77
Merged-chr5-51552697-1	chr5	51552597	51552797	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1224.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	1.62	8.8	3.99	9.65	6.14	1.25	3.65	4.4	1.38	4.52	3.01	2.51
Merged-chr2-93957240-1	chr2	93957140	93957340	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145034)	promoter-TSS (NM_001145034)	-140.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	3.63	3.77	5.13	1.61	7.77	2.82	1.99	4.77	6.49	2.51	4.52	3.76
Merged-chr11-48988316-1	chr11	48988216	48988416	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011579, intron 1 of 1)	intron (NM_011579, intron 1 of 1)	3930.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	5.65	8.3	7.42	8.04	4.09	8.78	4.32	3.03	7.28	7.03	8.54	2.51
Merged-chr9-70863615-1	chr9	70863515	70863715	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	71193.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	2.42	1.51	6.85	0.4	3.27	3.45	3.65	6.45	1.77	2.51	5.53	2.19
Merged-chr17-87617005-1	chr17	87616905	87617105	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18974.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.04	5.03	3.99	6.44	6.14	6.27	2.66	3.11	3.15	4.02	2.01	1.57
Merged-chr19-57072960-2	chr19	57072851	57073051	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001103177, intron 8 of 21)	intron (NM_001103177, intron 8 of 21)	46073.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	8.08	7.04	3.42	7.24	5.32	2.82	1.66	4.65	6.69	2.51	6.03	6.27
Merged-chr8-120821541-3	chr8	120821420	120821620	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82881.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	9.69	7.04	3.42	0.8	8.59	6.9	6.64	5.97	7.47	10.04	8.54	6.27
Merged-chr13-98778092-1	chr13	98777992	98778192	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172591, intron 6 of 25)	intron (NM_172591, intron 6 of 25)	37357.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	11.31	0.5	5.13	10.46	3.27	3.76	1.66	11.83	3.74	2.01	4.52	9.71
Merged-chr9-13484690-1	chr9	13484590	13484790	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53329.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.65	2.01	3.99	1.21	1.64	5.02	3.99	4.32	1.77	1.0	0.0	1.25
Merged-chr13-109610073-1	chr13	109609973	109610173	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	285329.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	5.65	2.77	5.7	0.8	4.91	4.39	4.98	5.16	3.54	3.01	1.0	2.19
Merged-chr2-156960123-1	chr2	156960023	156960223	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355394, intron 1 of 15)	Lx3_Mus|LINE|L1	31580.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	2.83	7.55	2.28	4.02	9.0	9.41	2.66	3.08	8.26	7.03	7.03	5.01
Merged-chr17-84096580-1	chr17	84096480	84096680	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	17920.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	1.62	6.04	4.56	0.4	4.91	4.7	4.32	3.39	2.95	0.0	4.52	2.82
Merged-chr3-90617719-1	chr3	90617619	90617819	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	4825.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	1.62	4.53	2.28	0.8	0.0	0.63	0.66	0.76	11.6	1.0	2.51	6.89
Merged-chr4-132065844-1	chr4	132065744	132065944	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	6253.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	2.42	3.77	2.28	4.02	7.36	4.39	2.99	5.1	9.64	2.01	8.54	5.33
Merged-chr4-105378012-1	chr4	105377912	105378112	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	220665.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.44	0.5	0.0	1.61	3.27	0.63	5.65	5.13	3.15	4.52	7.54	3.13
Merged-chr14-25463022-1	chr14	25462922	25463122	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	3837.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.42	1.51	0.0	0.0	2.45	5.64	1.99	0.84	0.0	0.0	0.5	2.51
Merged-chr9-65539157-1	chr9	65539057	65539257	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	40930.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	1.62	6.54	10.27	2.41	4.5	6.27	4.32	4.07	6.88	5.02	3.52	2.51
Merged-chr3-82362590-2	chr3	82362485	82362685	+	587.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356457, intron 3 of 13)	ORR1D2|LTR|ERVL-MaLR	4398.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	7.67	7.8	1.14	7.64	4.09	3.76	0.66	5.69	9.05	10.04	23.62	6.27
Merged-chr1-26687469-2	chr1	26687386	26687586	+	587.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-26.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	6.86	6.29	7.42	10.05	1.64	1.88	2.99	4.49	3.15	3.01	4.02	7.52
Merged-chr7-122405059-2	chr7	122404989	122405189	+	587.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	115964.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.25	7.8	3.42	3.22	2.86	0.94	2.99	0.42	4.92	5.52	6.03	11.59
Merged-chr8-83451197-2	chr8	83451063	83451263	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039137, intron 1 of 3)	intron (NM_001039137, intron 1 of 3)	7233.0	NM_001039137	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	6.86	1.51	2.28	6.03	2.05	0.63	2.99	2.41	6.1	3.01	4.52	5.33
Merged-chr10-44533484-1	chr10	44533384	44533584	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74736.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	2.42	4.02	2.85	1.61	8.18	8.47	6.98	2.69	1.18	6.03	1.51	0.63
Merged-chr10-30550229-1	chr10	30550129	30550329	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358806, intron 9 of 10)	L1MB7|LINE|L1	50471.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	8.08	5.28	12.55	1.21	5.73	6.27	12.62	4.82	12.78	7.03	8.04	1.88
Merged-chr7-34811783-1	chr7	34811683	34811883	+	587.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175140, intron 1 of 3)	CpG	928.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	2.42	3.02	4.56	3.62	2.45	1.25	1.33	3.06	6.29	4.52	10.55	7.21
Merged-chr1-156449223-1	chr1	156449123	156449323	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	25105.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.63	2.77	4.56	3.62	2.45	4.08	5.31	5.61	1.97	0.5	3.52	0.0
Merged-chr14-72644784-2	chr14	72644675	72644875	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	65228.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.85	9.56	10.27	9.25	3.68	4.7	2.33	5.44	8.26	3.01	6.03	8.46
Merged-chr14-103045545-2	chr14	103045445	103045645	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1467.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	2.83	6.04	10.27	3.22	2.45	5.02	3.32	0.25	12.39	6.53	9.55	0.0
Merged-chr14-70775014-2	chr14	70774894	70775094	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	613.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.86	2.52	11.41	1.21	3.68	3.45	5.98	4.6	7.47	3.01	8.04	5.01
Merged-chr6-48582168-2	chr6	48582062	48582262	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7283.0	NM_183309	330305.0	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	4.85	6.54	6.85	5.63	3.27	1.25	1.66	4.18	8.65	6.53	10.05	2.82
Merged-chr15-27726518-1	chr15	27726418	27726618	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44976.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.04	2.52	2.28	5.63	7.77	5.02	4.32	4.32	5.7	3.01	2.51	5.64
Merged-chrX-48144203-1	chrX	48144103	48144303	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2233.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	6.06	3.77	5.13	1.61	1.64	4.08	3.32	5.05	4.72	3.51	4.02	1.57
Merged-chr11-58360096-1	chr11	58359996	58360196	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18936.0	NM_027339	70163.0	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	4.85	1.51	1.14	8.85	2.45	5.96	4.32	5.07	0.0	0.0	0.0	0.0
Merged-chr1-85593215-1	chr1	85593115	85593315	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030194, intron 3 of 11)	intron (NM_030194, intron 3 of 11)	5595.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.23	6.79	7.42	6.03	0.82	4.39	10.63	5.5	0.39	0.0	0.0	1.25
Merged-chr13-24641676-2	chr13	24641566	24641766	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080381, intron 1 of 14)	intron (NM_001080381, intron 1 of 14)	3018.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.04	6.29	5.13	3.62	2.86	3.45	6.98	4.04	7.67	5.02	4.52	6.89
Merged-chr6-39002646-1	chr6	39002546	39002746	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64940.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	2.42	1.01	3.42	9.65	9.0	2.2	7.31	6.11	2.36	1.51	6.03	0.63
Merged-chr3-89340689-3	chr3	89340569	89340769	+	587.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037722, intron 20 of 22)	intron (NM_001037722, intron 20 of 22)	-2641.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	5.65	8.55	5.7	0.0	4.5	5.64	2.33	5.75	9.83	9.54	6.53	3.45
Merged-chr19-47837350-3	chr19	47837263	47837463	+	587.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027559)	promoter-TSS (NM_027559)	-2.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	10.5	5.79	9.13	7.24	8.59	13.17	2.99	5.19	6.1	9.04	11.56	7.21
Merged-chrX-74424201-1	chrX	74424101	74424301	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136067)	promoter-TSS (NM_001136067)	-411.0	NM_001161421	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	4.44	3.02	0.57	4.83	7.77	6.27	7.97	4.93	7.28	9.54	3.01	4.39
Merged-chr8-3670583-2	chr8	3670479	3670679	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357661)	TTS (NM_001357661)	1812.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	6.86	3.27	2.85	3.22	7.77	6.9	5.31	4.68	8.65	6.03	12.56	9.4
Merged-chr6-17800385-2	chr6	17800271	17800471	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51201.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	1.62	5.03	6.28	1.61	4.09	5.96	9.63	5.89	8.65	10.04	6.53	8.46
Merged-chr1-9746679-2	chr1	9746582	9746782	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040462)	promoter-TSS (NR_040462)	-966.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	2.02	5.28	3.99	4.83	5.32	2.51	4.65	4.57	2.75	2.01	12.06	12.22
Merged-chrX-169136026-1	chrX	169135926	169136126	+	587.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	L1Md_A|LINE|L1	23148.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	4.04	3.02	0.0	7.24	5.32	3.76	1.99	3.2	10.62	11.55	16.58	8.77
Merged-chr19-41999312-2	chr19	41999202	41999402	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	17539.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.86	5.03	5.13	3.22	3.68	5.33	8.64	5.07	11.01	7.03	4.02	4.39
Merged-chr17-57246105-1	chr17	57246005	57246205	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030084, intron 2 of 16)	Lx8|LINE|L1	1365.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	8.08	3.02	4.56	5.23	2.86	6.59	2.33	4.26	2.56	0.5	3.52	3.13
Merged-chr2-44975488-2	chr2	44975372	44975572	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47705.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	7.67	6.54	1.71	2.82	7.36	7.21	2.33	3.22	4.13	3.01	9.04	0.63
Merged-chr9-99450108-1	chr9	99450008	99450208	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6135.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	3.63	3.52	4.56	1.21	7.36	1.57	2.33	4.18	3.93	2.01	2.51	3.13
Merged-chr13-23732563-1	chr13	23732463	23732663	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6244.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	2.83	3.02	10.27	4.02	3.27	0.63	3.32	1.04	4.13	9.04	7.54	3.45
Merged-chr3-136793723-1	chr3	136793623	136793823	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	123657.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.23	3.77	6.85	6.44	7.36	4.39	7.64	4.68	5.31	3.01	3.01	5.64
Merged-chr6-30173409-1	chr6	30173309	30173509	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126541, intron 1 of 1)	CpG	716.0	NR_126540	101447999.0		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	1.21	10.56	2.28	3.22	5.32	5.33	3.99	4.82	4.13	2.51	8.54	6.58
Merged-chr5-142074965-1	chr5	142074865	142075065	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177879, intron 22 of 44)	intron (NM_177879, intron 22 of 44)	-326532.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	1.62	2.26	1.14	0.0	2.05	0.63	8.3	4.54	4.72	4.02	4.02	3.76
Merged-chr1-127850257-1	chr1	127850157	127850357	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9967.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	1.62	3.02	4.56	3.22	6.14	5.33	5.65	8.47	8.65	10.54	8.04	5.33
Merged-chr4-132899337-1	chr4	132899237	132899437	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163792, exon 8 of 8)	3' UTR (NM_001163792, exon 8 of 8)	-14879.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	1.62	0.0	1.14	1.61	1.23	0.0	0.0	0.0	11.21	13.05	3.52	4.39
Merged-chr1-80723439-1	chr1	80723339	80723539	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35114.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.85	8.3	3.42	1.21	2.45	6.59	2.66	4.71	7.47	9.04	3.52	2.19
Merged-chr9-81626087-1	chr9	81625987	81626187	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5843.0	NR_040394	319405.0	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.0	1.01	0.0	0.0	0.82	4.39	5.98	6.03	2.75	0.5	0.0	0.94
Merged-chr17-47009083-1	chr17	47008983	47009183	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	1449.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	8.88	3.77	7.99	3.62	10.64	6.27	2.33	1.96	6.69	10.04	4.02	3.45
Merged-chr3-9705212-1	chr3	9705112	9705312	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 3 of 7)	intron (NM_053182, intron 3 of 7)	-95127.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	6.86	6.79	2.85	2.41	4.5	4.7	4.32	6.93	4.92	7.03	3.52	2.51
Merged-chr19-34283831-1	chr19	34283731	34283931	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6828.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.0	0.5	0.0	0.0	0.0	0.31	1.33	1.09	9.83	4.02	9.04	6.58
Merged-chr8-126464183-1	chr8	126464083	126464283	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159907, intron 4 of 29)	RMER20A|LTR|ERVK	10882.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	3.63	7.8	7.99	1.21	0.82	5.64	2.99	0.73	7.67	4.52	10.55	0.94
Merged-chr2-12002485-1	chr2	12002385	12002585	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	224732.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	6.06	1.01	1.71	1.21	3.68	5.64	4.32	4.46	6.69	4.02	4.52	1.57
Merged-chr1-152512363-1	chr1	152512263	152512463	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	112496.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	7.67	10.31	4.56	2.01	2.45	2.2	2.66	0.98	1.18	2.01	4.02	3.76
Merged-chr12-69185557-1	chr12	69185457	69185657	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1399.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0.0	0.75	8.56	0.8	3.27	5.96	1.33	4.57	10.23	4.52	4.52	8.77
Merged-chr10-8370158-2	chr10	8370068	8370268	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	148657.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.4	1.26	3.42	4.83	9.82	1.88	5.31	5.61	5.11	5.52	6.53	5.33
Merged-chr15-101971953-1	chr15	101971853	101972053	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17666.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	3.63	7.29	1.71	5.63	2.45	6.59	5.98	4.04	3.93	3.01	7.03	2.19
Merged-chr2-118703428-1	chr2	118703328	118703528	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	535.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	3.63	5.79	2.28	1.61	6.55	8.47	4.65	5.02	4.72	1.0	2.01	2.82
Merged-chr3-75861843-1	chr3	75861743	75861943	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	95106.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	4.44	3.02	10.27	1.61	3.27	4.08	7.64	7.79	13.37	6.53	5.02	5.64
Merged-chr7-123360383-1	chr7	123360283	123360483	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	9532.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.04	7.8	0.0	1.61	4.5	10.03	0.66	2.75	8.85	7.53	5.02	1.88
Merged-chr12-51790530-1	chr12	51790430	51790630	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_144788, exon 14 of 43)	exon (NM_144788, exon 14 of 43)	39006.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	6.06	3.52	10.27	10.05	4.09	3.14	0.66	8.72	8.26	0.0	2.01	2.51
Merged-chr4-3083455-1	chr4	3083355	3083555	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-88628.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	6.86	7.04	6.85	6.84	2.86	1.57	2.99	2.72	6.1	8.54	2.01	10.96
Merged-chr11-111445001-1	chr11	111444901	111445101	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	378837.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.06	2.01	5.13	5.23	0.41	5.64	3.65	4.23	5.7	5.02	6.53	3.76
Merged-chr11-95402966-1	chr11	95402866	95403066	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11117.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	10.5	6.29	7.42	4.42	3.27	0.63	1.33	4.04	2.16	4.52	2.01	1.57
Merged-chr8-88242056-1	chr8	88241956	88242156	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	-30347.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	0.5	1.14	0.0	0.82	3.76	1.66	0.03	10.03	8.03	8.54	5.64
Merged-chr2-29817809-2	chr2	29817696	29817896	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011989)	TTS (NM_011989)	-9593.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	7.67	4.53	3.42	2.41	5.32	6.9	2.99	3.67	6.88	5.02	3.01	5.64
Merged-chr14-66240543-1	chr14	66240443	66240643	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-26719.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.23	5.28	1.14	6.84	5.32	3.14	3.65	4.82	3.74	3.01	12.06	2.82
Merged-chr2-93459915-1	chr2	93459815	93460015	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	1936.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	8.08	6.79	16.54	2.41	6.55	1.88	6.64	2.86	6.29	1.0	1.0	7.21
Merged-chr5-151394182-1	chr5	151394082	151394282	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045699, intron 3 of 3)	intron (NR_045699, intron 3 of 3)	-12322.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	3.63	1.01	1.14	1.61	0.82	0.0	5.31	4.37	1.57	1.51	2.51	1.25
Merged-chr17-83297638-1	chr17	83297538	83297738	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-53293.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	1.21	2.77	2.85	2.41	4.5	2.82	2.99	3.31	2.16	6.53	5.02	5.33
Merged-chr19-61059192-1	chr19	61059092	61059292	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131953, intron 3 of 6)	RLTR12B|LTR|ERVK	81648.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	5.65	0.25	2.28	0.8	3.27	3.76	1.99	2.64	11.21	7.53	10.55	4.07
Merged-chr13-56152007-2	chr13	56151920	56152120	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16470.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	6.86	6.29	9.7	5.23	4.09	6.9	5.98	5.72	7.47	2.01	5.53	4.07
Merged-chr6-148579080-1	chr6	148578980	148579180	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35229.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.04	3.27	1.14	7.64	4.09	7.21	3.99	7.07	5.31	9.04	3.52	2.82
Merged-chr9-103225649-1	chr9	103225549	103225749	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133977, intron 4 of 16)	intron (NM_133977, intron 4 of 16)	4637.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	1.62	3.27	7.99	2.82	0.0	3.14	3.99	4.63	11.01	1.0	9.55	7.21
Merged-chr3-157717679-1	chr3	157717579	157717779	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	150787.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	2.83	2.77	6.28	1.61	0.0	1.25	7.31	4.71	4.52	2.01	3.01	2.82
Merged-chr2-170247851-1	chr2	170247751	170247951	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105176.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.42	6.29	0.0	2.41	5.73	5.33	3.32	6.5	8.65	6.53	10.05	7.52
Merged-chr6-122864030-1	chr6	122863930	122864130	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7873.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	2.52	1.14	1.61	5.73	1.25	3.32	7.15	2.36	1.0	1.51	1.88
Merged-chr9-40391623-1	chr9	40391523	40391723	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-15206.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.62	1.26	5.7	4.42	4.91	5.02	1.99	10.77	4.33	5.52	13.06	4.39
Merged-chr4-119223833-1	chr4	119223733	119223933	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5616.0	NM_029198	75180.0	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	4.04	1.51	6.28	1.61	0.82	3.76	4.32	3.31	5.51	10.04	14.07	1.88
Merged-chr10-125224777-1	chr10	125224677	125224877	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001358915, exon 6 of 6)	3' UTR (NM_001358915, exon 6 of 6)	84039.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.4	0.5	1.14	5.23	4.09	5.33	1.0	5.89	3.34	4.02	11.05	10.65
Merged-chr2-14208784-1	chr2	14208684	14208884	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081310, intron 3 of 3)	MIR|SINE|MIR	-20630.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.63	2.01	7.42	4.02	3.27	4.7	1.99	2.94	6.29	3.01	4.52	2.82
Merged-chr8-120471357-2	chr8	120471245	120471445	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17521.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.63	4.78	4.56	1.61	0.82	5.33	3.32	7.21	7.67	4.52	12.56	5.33
Merged-chr15-36888550-1	chr15	36888450	36888650	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-91621.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	3.63	10.56	4.56	4.02	7.36	4.08	1.99	5.02	5.51	1.51	7.03	4.39
Merged-chr17-25895659-1	chr17	25895559	25895759	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	6568.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	8.88	3.77	5.7	12.87	2.86	2.51	2.33	4.46	4.92	2.01	3.01	4.07
Merged-chr9-116217273-1	chr9	116217173	116217373	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28093.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	8.48	4.02	3.42	7.24	8.59	2.51	6.64	4.71	6.1	6.03	8.04	6.58
Merged-chr6-87552060-1	chr6	87551960	87552160	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18801.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.42	4.53	9.13	2.82	1.64	6.9	2.99	3.64	6.29	7.03	12.56	4.7
Merged-chr16-34667173-1	chr16	34667073	34667273	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030744, intron 2 of 5)	intron (NM_030744, intron 2 of 5)	15962.0	NM_030744	76378.0	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	6.06	3.27	2.28	3.62	4.5	3.76	1.66	3.98	8.06	3.51	7.54	8.46
Merged-chr1-92037261-1	chr1	92037161	92037361	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	143080.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	2.42	4.53	9.13	9.25	4.91	2.2	4.98	8.24	2.36	1.0	2.01	3.45
Merged-chr17-35440116-1	chr17	35440016	35440216	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001201460, exon 3 of 7)	exon (NM_001201460, exon 3 of 7)	949.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	1.62	4.53	3.42	0.0	1.64	1.57	0.0	0.9	9.24	4.52	6.53	7.52
Merged-chr7-122520928-1	chr7	122520828	122521028	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-150816.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.63	6.29	10.27	8.85	1.64	0.0	0.33	0.5	0.0	0.0	1.0	0.94
Merged-chr12-102579268-1	chr12	102579168	102579368	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 7 of 9)	intron (NM_172584, intron 7 of 9)	24327.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	4.44	3.02	3.42	0.0	4.91	3.76	4.65	3.9	4.92	2.51	1.51	5.01
Merged-chr2-164835487-1	chr2	164835387	164835587	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038492, intron 6 of 14)	intron (NM_001038492, intron 6 of 14)	1714.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	2.42	1.01	5.13	1.61	3.68	3.14	8.97	5.3	4.72	6.53	1.51	6.89
Merged-chr5-64291038-1	chr5	64290938	64291138	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	L1MB8|LINE|L1	60681.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.83	6.79	5.13	5.63	5.32	6.9	3.32	10.09	6.49	2.01	7.54	6.89
Merged-chr10-89680796-1	chr10	89680696	89680896	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	5498.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	1.62	2.26	0.57	4.42	2.86	5.64	6.31	4.85	5.9	5.02	6.53	3.45
Merged-chr11-98923297-1	chr11	98923197	98923397	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011799, exon 12 of 12)	3' UTR (NM_011799, exon 12 of 12)	-14399.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.83	6.29	9.7	8.85	3.27	8.47	7.64	4.99	7.08	3.01	6.53	5.64
Merged-chr9-47711156-1	chr9	47711056	47711256	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	107052.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.21	0.75	1.14	0.0	2.45	0.94	0.66	2.44	3.15	2.01	0.5	3.45
Merged-chr7-19922138-1	chr7	19922038	19922238	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	-995.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	4.85	13.58	6.28	3.22	6.95	9.72	1.66	0.87	10.42	7.03	13.06	1.57
Merged-chr1-171358575-2	chr1	171358476	171358676	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001360824, exon 4 of 4)	3' UTR (NM_001360824, exon 4 of 4)	2222.0	NM_001033039	68874.0	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	3.23	9.56	1.14	2.41	9.0	8.78	1.33	4.99	11.8	3.51	10.05	1.25
Merged-chr13-99190746-1	chr13	99190646	99190846	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	5923.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.06	6.79	7.99	7.24	7.77	4.08	6.98	5.38	8.26	6.03	6.53	4.07
Merged-chr9-114752477-1	chr9	114752377	114752577	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21274.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	7.67	2.77	0.0	3.22	5.32	4.08	2.66	4.07	10.62	4.52	9.55	8.14
Merged-chr5-34520672-1	chr5	34520572	34520772	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5112.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	8.48	6.54	7.99	2.41	6.14	1.88	2.99	0.2	4.52	2.01	3.01	4.7
Merged-chr2-59132448-1	chr2	59132348	59132548	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	RLTR13B4|LTR|ERVK	28235.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	2.42	0.0	1.71	4.02	6.14	15.68	1.99	3.76	5.31	14.06	11.56	7.83
Merged-chr5-120793243-1	chr5	120793143	120793343	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347450, intron 2 of 5)	intron (NM_001347450, intron 2 of 5)	2287.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	6.46	6.04	1.71	0.0	4.09	3.45	6.98	4.12	10.03	5.02	4.52	0.94
Merged-chr6-85904934-1	chr6	85904834	85905034	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029331)	promoter-TSS (NM_029331)	4.0	NM_029331	75541.0	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	2.83	3.02	3.99	1.61	1.64	2.82	2.99	4.54	9.83	14.56	16.08	5.64
Merged-chr8-72151887-1	chr8	72151787	72151987	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001001491, exon 8 of 8)	3' UTR (NM_001001491, exon 8 of 8)	-9313.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	6.06	3.77	1.14	10.46	8.18	8.15	4.98	5.19	6.88	6.03	6.03	4.07
Merged-chr10-19580966-1	chr10	19580866	19581066	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10983.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	10.5	4.02	1.14	9.25	10.23	8.15	0.66	3.67	7.47	11.55	6.53	3.45
Merged-chr11-67637901-1	chr11	67637801	67638001	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	41346.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.62	0.0	3.42	0.8	3.27	5.02	0.66	4.01	7.67	2.51	1.0	4.7
Merged-chr16-70932993-1	chr16	70932893	70933093	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198083.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	1.21	2.01	9.13	6.84	6.14	1.25	1.66	7.88	0.98	2.01	2.51	0.63
Merged-chr13-110431578-1	chr13	110431478	110431678	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36534.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.81	0.0	0.0	0.0	4.09	6.27	4.98	5.69	6.29	4.02	9.55	0.31
Merged-chr7-106429266-1	chr7	106429166	106429366	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003967, intron 2 of 2)	L1_Mus3|LINE|L1	11807.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	1.62	4.53	10.27	3.62	9.0	3.76	3.32	4.37	0.0	1.51	1.0	0.31
Merged-chr12-99966440-2	chr12	99966380	99966580	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	1981.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	2.83	3.52	10.84	9.25	2.45	3.45	9.63	5.3	7.08	0.5	8.54	5.64
Merged-chr15-77305992-1	chr15	77305892	77306092	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	1061.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	1.21	2.52	1.14	3.22	6.14	0.63	5.98	4.63	2.56	1.0	0.0	3.45
Merged-chr11-121093118-1	chr11	121093018	121093218	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11979.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	4.04	7.55	9.7	4.83	1.23	9.72	2.99	2.36	7.28	8.03	5.53	1.88
Merged-chr14-76505526-1	chr14	76505426	76505626	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1016.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	1.62	4.78	0.57	3.22	2.05	4.7	2.66	3.64	1.18	3.51	2.01	2.82
Merged-chr13-81801289-2	chr13	81801176	81801376	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18029.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	8.08	9.31	4.56	2.82	2.86	6.9	0.0	6.73	13.77	3.51	10.55	10.96
Merged-chr10-14293091-1	chr10	14292991	14293191	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	251945.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	6.46	3.02	1.14	3.62	3.68	5.33	8.3	4.65	1.57	2.01	1.51	4.39
Merged-chr12-98282798-1	chr12	98282698	98282898	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14163.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	2.42	5.79	2.28	8.45	0.41	2.51	2.66	0.42	2.56	1.51	7.03	1.57
Merged-chr12-75765986-2	chr12	75765884	75766084	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30255.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	2.83	2.26	0.0	5.63	2.86	1.25	3.32	5.27	8.46	10.04	5.02	2.82
Merged-chr10-89733161-1	chr10	89733061	89733261	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-866.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	0.81	9.31	11.41	4.02	2.45	2.82	2.33	3.53	6.49	2.51	5.02	3.76
Merged-chr5-25760605-1	chr5	25760505	25760705	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310504, intron 1 of 10)	intron (NM_001310504, intron 1 of 10)	632.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	3.63	3.52	1.14	0.0	0.82	4.39	3.99	4.35	2.75	2.51	4.02	4.39
Merged-chr17-23968897-1	chr17	23968797	23968997	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6333.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	8.88	5.79	5.7	4.02	3.27	2.51	3.32	2.8	9.44	10.54	9.55	6.27
Merged-chr17-81533902-1	chr17	81533802	81534002	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	204485.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	2.02	2.77	5.7	5.23	4.09	1.25	2.66	3.45	4.52	4.02	1.51	3.45
Merged-chr1-40412583-1	chr1	40412483	40412683	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-16987.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	3.27	7.21	7.64	1.46	3.93	0.0	2.01	0.0
Merged-chr19-6489210-1	chr19	6489110	6489310	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205234, intron 12 of 22)	intron (NM_001205234, intron 12 of 22)	53860.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	14.94	4.53	2.28	5.23	4.5	5.96	1.33	4.46	3.34	10.54	7.54	2.82
Merged-chr6-34352170-1	chr6	34352070	34352270	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1976.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	6.06	2.01	5.13	8.45	6.55	3.14	3.32	9.17	1.77	3.01	3.01	4.39
Merged-chr9-7553729-2	chr9	7553628	7553828	+	586.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4701.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	1.62	3.52	7.42	0.8	0.0	5.96	4.32	4.18	8.26	1.0	3.01	5.95
Merged-chr1-165457622-2	chr1	165457524	165457724	+	586.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028759, intron 1 of 18)	intron (NM_028759, intron 1 of 18)	2839.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	4.04	4.02	14.83	4.83	4.91	5.02	5.31	9.22	7.47	13.56	12.06	7.83
Merged-chr12-28638908-1	chr12	28638808	28639008	+	586.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-2955.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	7.87	6.03	10.55	7.52
Merged-chr8-25627477-2	chr8	25627387	25627587	+	586.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	-13090.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	4.44	5.28	2.28	4.02	4.91	6.59	5.31	4.26	9.64	7.03	7.03	9.71
Merged-chr16-38120701-2	chr16	38120595	38120795	+	586.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-31435.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	3.63	3.02	7.42	4.02	6.95	7.21	7.31	4.15	8.46	4.02	9.04	7.83
Merged-chr12-76832836-1	chr12	76832736	76832936	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4631.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	1.21	6.54	9.13	8.85	2.45	1.25	3.32	4.09	3.74	0.0	3.01	1.88
Merged-chr6-114836880-1	chr6	114836780	114836980	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	84941.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	1.62	1.26	1.71	4.83	2.45	3.76	3.32	4.15	6.69	2.01	7.54	5.33
Merged-chr16-13448541-1	chr16	13448441	13448641	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_030549)	promoter-TSS (NR_030549)	-982.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	4.44	5.03	3.42	2.41	1.64	5.02	5.31	5.41	4.92	9.04	2.01	8.14
Merged-chr4-141845510-1	chr4	141845410	141845610	+	586.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033875, intron 1 of 8)	intron (NM_001033875, intron 1 of 8)	849.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	4.04	2.52	6.28	1.61	3.68	8.15	1.33	1.85	7.08	5.52	10.55	7.83
Merged-chr13-107797035-1	chr13	107796935	107797135	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	MTD|LTR|ERVL-MaLR	93029.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	3.23	4.02	3.42	1.21	6.95	7.53	0.66	4.37	2.56	6.53	7.54	0.94
Merged-chr13-24634518-1	chr13	24634418	24634618	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-4130.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	12.52	5.53	1.14	3.22	6.14	5.96	2.33	5.21	6.1	6.03	4.52	2.51
Merged-chr8-105477187-1	chr8	105477087	105477287	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175160, intron 6 of 13)	intron (NM_175160, intron 6 of 13)	-5765.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	4.04	1.76	10.84	5.63	9.0	2.82	3.99	3.98	3.93	7.03	8.04	5.33
Merged-chr5-130454562-1	chr5	130454462	130454662	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5770.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.85	3.27	9.13	2.41	4.91	1.25	4.65	4.23	3.54	3.01	6.03	1.88
Merged-chr13-81760584-1	chr13	81760484	81760684	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22663.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	4.04	7.04	1.71	4.02	4.09	7.53	4.98	4.65	3.93	7.53	8.04	3.45
Merged-chr3-13611041-1	chr3	13610941	13611141	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040598, intron 3 of 3)	intron (NR_040598, intron 3 of 3)	41824.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	3.23	1.76	2.28	1.61	4.91	1.25	8.3	6.5	4.33	0.0	2.51	3.13
Merged-chr1-52844443-1	chr1	52844343	52844543	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-595.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	4.85	4.78	6.28	2.82	7.36	5.64	7.64	6.59	6.49	4.02	8.04	6.27
Merged-chr1-37998580-2	chr1	37998505	37998705	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	CpG	595.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	8.48	5.28	10.84	5.63	4.09	4.08	4.32	4.99	7.08	7.03	9.04	5.64
Merged-chr5-115544670-1	chr5	115544570	115544770	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011223, intron 2 of 10)	intron (NM_011223, intron 2 of 10)	-14797.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	6.06	2.77	4.56	0.8	3.27	2.51	0.66	2.66	4.33	3.01	0.5	0.63
Merged-chr14-29973375-2	chr14	29973277	29973477	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019979, exon 4 of 5)	exon (NM_019979, exon 4 of 5)	-4960.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	8.48	8.8	5.13	3.22	5.73	7.21	5.98	3.36	6.29	15.06	4.02	0.94
Merged-chr4-46657263-1	chr4	46657163	46657363	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7064.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	5.65	3.27	5.13	6.44	8.18	5.64	0.66	5.69	5.31	3.51	3.01	2.51
Merged-chr11-106458732-1	chr11	106458632	106458832	+	586.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	29064.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	5.25	6.04	11.98	5.23	4.09	4.7	5.31	6.06	7.67	2.01	10.05	5.64
Merged-chr13-24813661-1	chr13	24813561	24813761	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_024473)	TTS (NM_024473)	12004.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	3.23	3.02	26.81	11.26	9.41	6.27	6.64	4.49	16.72	7.53	9.55	4.7
Merged-chr15-97667628-2	chr15	97667531	97667731	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38191.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.44	7.8	5.13	3.62	9.0	8.78	7.97	5.69	5.51	7.03	5.02	1.88
Merged-chr19-40513298-1	chr19	40513198	40513398	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009166, intron 1 of 23)	intron (NM_009166, intron 1 of 23)	438.0	NM_178362	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.81	2.26	1.71	2.82	6.55	3.76	1.99	4.32	2.95	3.01	4.52	1.57
Merged-chr5-63886917-2	chr5	63886802	63887002	+	586.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029554, intron 2 of 3)	intron (NM_029554, intron 2 of 3)	74407.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	2.83	7.04	6.28	6.84	4.5	3.45	4.32	4.88	6.49	3.01	2.51	2.19
Merged-chr7-16398547-3	chr7	16398456	16398656	+	586.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-2640.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	10.09	6.04	10.84	4.42	2.45	13.17	4.98	3.45	8.46	9.04	5.02	6.58
Merged-chr2-163660207-1	chr2	163660107	163660307	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	1749.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	2.42	2.52	1.14	4.83	6.14	8.15	2.33	5.52	1.77	5.52	3.52	2.19
Merged-chr10-127002196-1	chr10	127002096	127002296	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009635, intron 1 of 19)	intron (NM_009635, intron 1 of 19)	1487.0	NM_009635	11567.0	Mm.10739	NM_009635	ENSMUSG00000025432	Avil	Advil|DOC6	advillin	protein-coding	2.02	0.0	3.99	3.62	2.05	2.2	3.99	5.27	9.05	1.51	3.01	0.31
Merged-chr15-35296843-1	chr15	35296743	35296943	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054049, intron 1 of 3)	CpG	731.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	2.83	2.52	2.85	1.61	2.05	4.08	1.99	4.6	2.95	2.51	1.51	2.82
Merged-chr7-19790181-1	chr7	19790081	19790281	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161844, intron 5 of 10)	intron (NM_001161844, intron 5 of 10)	6628.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	5.65	8.3	7.42	4.83	6.95	5.96	6.31	4.15	5.11	5.02	3.52	3.76
Merged-chr10-80741829-1	chr10	80741729	80741929	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007460, intron 1 of 30)	CpG	446.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	5.25	11.07	3.99	6.84	1.64	4.39	4.32	5.55	15.14	8.03	7.54	7.52
Merged-chr6-124998533-1	chr6	124998433	124998633	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	-77.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	6.46	11.82	10.27	1.61	5.32	4.39	8.97	2.38	6.88	3.01	6.53	2.82
Merged-chr12-117747682-1	chr12	117747582	117747782	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 25 of 27)	BGLII|LTR|ERVK	-96179.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.02	0.25	7.99	0.4	4.5	0.63	0.66	5.55	5.51	8.03	7.54	4.7
Merged-chr5-123019017-1	chr5	123018917	123019117	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	MIR|SINE|MIR	3943.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	2.42	3.27	1.14	2.82	4.91	3.14	1.33	6.0	5.7	5.02	9.04	3.76
Merged-chr4-136249954-1	chr4	136249854	136250054	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1997.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	12.52	3.27	1.14	9.65	4.91	8.15	1.99	4.29	16.33	7.03	7.54	6.89
Merged-chr11-94401347-1	chr11	94401247	94401447	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8371.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	1.21	3.77	6.28	2.01	3.68	11.92	6.64	4.43	1.97	2.51	9.04	0.63
Merged-chr4-102607031-1	chr4	102606931	102607131	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	17188.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.42	1.26	0.0	4.42	3.68	1.88	4.32	5.16	5.7	1.0	0.5	2.51
Merged-chr11-53853803-1	chr11	53853703	53853903	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	5453.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	8.08	5.03	4.56	2.82	2.05	5.96	3.65	3.5	12.0	2.01	7.54	6.58
Merged-chr11-44375608-1	chr11	44375508	44375708	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-24455.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.44	2.26	0.0	9.25	0.82	0.0	3.99	4.71	1.57	0.5	0.0	1.57
Merged-chr9-59293710-2	chr9	59293624	59293824	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2152.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	6.46	2.26	7.42	4.02	6.14	7.21	2.99	2.41	6.29	4.02	1.0	3.45
Merged-chr18-53855117-2	chr18	53855049	53855249	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6964.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.44	7.8	5.13	8.04	3.27	4.39	4.98	3.73	8.65	4.02	2.01	6.27
Merged-chr12-65074812-1	chr12	65074712	65074912	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	-794.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	5.25	1.76	2.28	2.82	6.55	1.57	4.98	5.19	5.11	0.5	4.52	3.13
Merged-chr1-87853896-1	chr1	87853796	87853996	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136921, intron 1 of 1)	CpG	403.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.44	6.04	4.56	1.21	3.27	3.14	5.65	4.43	6.29	6.03	8.04	5.01
Merged-chr15-83034104-1	chr15	83034004	83034204	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	-707.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.44	3.27	2.28	8.45	2.45	3.14	4.98	3.06	5.51	4.02	6.03	4.39
Merged-chr10-95766768-1	chr10	95766668	95766868	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-173895.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.25	1.76	2.85	2.01	5.73	2.51	4.65	6.08	3.15	5.52	4.52	2.82
Merged-chr13-13349516-1	chr13	13349416	13349616	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44108.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	1.62	3.52	5.13	6.84	4.09	4.08	6.31	5.41	6.69	4.02	10.05	5.01
Merged-chr8-72586172-1	chr8	72586072	72586272	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	14349.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	11.71	6.04	10.84	4.02	0.41	3.14	2.33	0.84	10.23	5.02	6.03	3.76
Merged-chr7-7187623-1	chr7	7187523	7187723	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	16270.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	3.23	2.77	1.71	4.02	6.95	6.27	5.31	4.51	1.18	2.01	3.01	1.25
Merged-chr5-8841050-1	chr5	8840950	8841150	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011075, intron 21 of 27)	intron (NM_011075, intron 21 of 27)	-42527.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	2.42	5.03	2.28	4.42	2.45	4.39	7.97	4.99	5.51	0.0	2.01	1.25
Merged-chr7-38267145-1	chr7	38267045	38267245	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025390, intron 3 of 6)	intron (NM_025390, intron 3 of 6)	4203.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	2.42	2.77	2.28	4.02	2.45	1.88	0.66	3.31	7.08	9.04	6.53	4.7
Merged-chr1-82290957-1	chr1	82290857	82291057	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010570, exon 1 of 2)	5' UTR (NM_010570, exon 1 of 2)	482.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	2.42	4.78	1.14	6.44	4.91	5.64	1.66	3.98	1.57	3.51	2.01	5.01
Merged-chr13-32866600-1	chr13	32866500	32866700	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15415.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	4.85	7.04	6.85	4.02	4.09	5.96	5.98	7.18	5.11	8.03	4.02	6.58
Merged-chr2-104069971-1	chr2	104069871	104070071	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1039.0	NM_181858	333883.0	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	2.02	2.01	2.28	2.01	8.18	3.76	4.98	3.79	4.13	1.0	5.02	5.01
Merged-chr8-119835162-1	chr8	119835062	119835262	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5417.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.04	8.05	6.85	5.63	6.95	9.72	4.32	2.07	2.56	7.03	1.51	5.95
Merged-chr4-144997335-1	chr4	144997235	144997435	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	104198.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	9.29	2.01	1.14	4.83	6.14	1.88	6.64	6.42	0.79	0.0	2.01	3.13
Merged-chr6-14901670-1	chr6	14901570	14901770	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_053242, exon 1 of 19)	5' UTR (NM_053242, exon 1 of 19)	321.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	4.04	2.26	3.99	4.02	1.23	5.64	2.33	4.93	1.18	0.0	2.01	0.63
Merged-chr14-27380836-1	chr14	27380736	27380936	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 4 of 10)	L1ME4b|LINE|L1	19447.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.04	2.01	3.42	0.0	0.82	5.02	3.32	3.7	1.97	4.52	1.0	3.45
Merged-chr19-55814644-1	chr19	55814544	55814744	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	72834.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.04	10.31	4.56	5.23	8.18	8.47	2.33	4.91	4.33	8.03	4.02	0.94
Merged-chr13-112658802-1	chr13	112658702	112658902	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1964.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.81	0.0	0.0	0.8	1.64	0.63	1.0	1.37	7.08	0.5	4.52	6.58
Merged-chr6-125272286-1	chr6	125272186	125272386	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6761.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.81	2.52	10.27	2.82	2.45	7.53	1.33	4.4	15.74	6.03	2.51	3.76
Merged-chr6-83643166-1	chr6	83643066	83643266	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	12950.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.83	2.77	6.28	2.01	2.86	4.7	3.32	3.87	1.38	4.02	3.52	5.33
Merged-chr14-104002692-1	chr14	104002592	104002792	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	24450.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	13.33	4.02	1.14	4.83	6.14	4.39	0.33	12.45	14.75	9.54	11.05	3.45
Merged-chr7-89998217-2	chr7	89998097	89998297	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17221.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	6.86	5.03	6.85	0.8	4.91	5.02	1.33	4.37	14.95	6.53	10.05	5.95
Merged-chr19-6979228-1	chr19	6979128	6979328	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008020, intron 1 of 5)	intron (NM_008020, intron 1 of 5)	164.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	5.65	5.28	13.69	0.8	6.14	9.72	4.65	3.79	8.46	6.03	7.03	7.21
Merged-chr8-104051198-1	chr8	104051098	104051298	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50427.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	2.83	4.53	3.42	1.21	2.45	3.76	4.65	4.15	5.51	6.53	5.53	1.57
Merged-chr16-92670506-1	chr16	92670406	92670606	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	26823.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.02	2.26	4.56	3.22	4.91	6.59	2.99	4.49	7.28	5.52	4.52	5.64
Merged-chr1-10089750-1	chr1	10089650	10089850	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026493, intron 14 of 29)	B4|SINE|B4	51532.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	4.44	1.76	1.71	0.8	4.5	2.82	3.99	3.2	3.54	4.02	8.54	3.45
Merged-chr2-27358659-1	chr2	27358559	27358759	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68949.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.23	2.26	3.99	1.61	6.55	2.2	0.0	4.77	1.57	0.5	3.01	2.51
Merged-chr7-97589645-1	chr7	97589545	97589745	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	9749.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	1.21	4.53	2.28	4.42	4.91	0.63	8.64	4.21	5.31	5.02	1.51	0.63
Merged-chr6-24721913-1	chr6	24721813	24722013	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11332.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.81	2.01	10.27	4.83	4.91	5.02	4.32	4.57	4.52	3.01	0.0	1.57
Merged-chr8-123422715-1	chr8	123422615	123422815	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_023279)	TTS (NM_023279)	11151.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	8.48	3.52	10.27	7.24	3.27	12.23	7.97	3.2	3.74	6.53	6.03	1.88
Merged-chr18-74911077-1	chr18	74910977	74911177	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	50186.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	2.01	6.28	0.8	2.45	5.02	5.31	2.19	6.88	6.53	12.56	3.76
Merged-chr19-9140585-1	chr19	9140485	9140685	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-5019.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	4.85	6.04	3.42	6.44	9.0	8.47	5.31	5.8	2.36	4.02	1.0	0.94
Merged-chr1-65189075-1	chr1	65188975	65189175	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	2390.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	6.06	2.26	1.71	0.0	2.86	0.63	5.98	5.02	3.93	1.51	6.53	4.07
Merged-chr1-191120693-1	chr1	191120593	191120793	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	22279.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.42	2.77	1.71	2.41	3.27	1.88	0.0	1.21	2.36	1.0	0.5	1.25
Merged-chr15-72716674-1	chr15	72716574	72716774	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 18 of 21)	intron (NM_029640, intron 18 of 21)	93650.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	2.52	0.0	3.22	1.64	2.51	8.97	4.71	1.38	2.01	5.02	4.7
Merged-chr6-135167516-1	chr6	135167416	135167616	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	699.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	6.46	7.55	2.85	8.04	4.09	5.64	8.3	6.95	12.39	11.05	6.53	7.52
Merged-chr2-12051295-1	chr2	12051195	12051395	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-249951.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.4	1.26	4.56	5.63	3.27	5.64	6.64	5.61	5.9	5.52	4.02	0.94
Merged-chr17-81500832-1	chr17	81500732	81500932	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	237555.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.85	8.05	6.85	7.24	10.64	5.64	3.99	2.19	0.98	3.51	3.01	2.19
Merged-chr17-7864979-1	chr17	7864879	7865079	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60005.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	6.46	2.52	4.56	2.82	4.5	4.7	3.99	5.1	4.52	10.54	14.57	8.46
Merged-chr6-124997534-1	chr6	124997434	124997634	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	814.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	3.63	2.01	2.85	3.22	6.95	3.76	9.63	4.68	2.56	2.01	2.51	4.7
Merged-chr5-112907547-2	chr5	112907439	112907639	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11177.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	3.63	10.56	7.42	6.84	9.0	5.02	3.65	3.93	4.92	1.0	6.03	1.88
Merged-chr11-95688088-1	chr11	95687988	95688188	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	21131.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	4.44	7.29	10.84	0.8	1.64	1.88	2.33	2.02	1.38	4.52	0.5	0.31
Merged-chr3-96597686-1	chr3	96597586	96597786	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1050.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	6.46	2.77	2.85	2.82	2.45	2.2	1.99	3.03	3.74	4.52	3.52	4.7
Merged-chr3-53522918-1	chr3	53522818	53523018	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172862, intron 18 of 23)	intron (NM_172862, intron 18 of 23)	34125.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	2.42	1.01	2.28	0.8	4.5	4.7	5.65	5.44	2.16	0.0	2.01	1.25
Merged-chr9-53537492-1	chr9	53537392	53537592	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	445.0	NM_001081152	244879.0	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	6.46	9.06	12.55	6.03	4.09	0.63	3.65	3.56	4.92	8.03	9.55	8.14
Merged-chr16-17232966-1	chr16	17232866	17233066	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-621.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	4.04	3.52	1.71	4.02	5.73	3.14	6.31	5.36	3.54	1.51	8.54	5.33
Merged-chr9-50697798-1	chr9	50697698	50697898	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178118, intron 5 of 19)	intron (NM_178118, intron 5 of 19)	30186.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	5.25	1.01	5.13	0.4	3.27	3.76	2.33	4.18	2.75	3.51	4.02	3.13
Merged-chr12-38735677-1	chr12	38735577	38735777	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-44405.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.04	3.02	3.42	10.46	1.23	1.88	4.65	3.84	1.38	2.51	5.02	5.95
Merged-chr14-70371063-1	chr14	70370963	70371163	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-19639.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	3.23	2.26	5.13	2.82	11.05	5.96	1.66	4.15	4.33	14.06	7.54	3.45
Merged-chr2-84429927-2	chr2	84429822	84430022	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4656.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	12.52	1.51	2.28	7.64	6.95	5.02	1.99	6.34	7.87	7.03	8.54	2.82
Merged-chr1-45926232-1	chr1	45926132	45926332	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-638.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.67	5.28	4.56	0.8	8.59	7.21	4.32	4.15	5.51	2.51	3.52	5.01
Merged-chr19-14636899-2	chr19	14636815	14637015	+	585.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38732.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	1.21	3.27	2.85	2.41	9.41	4.39	5.31	5.5	7.67	6.53	5.02	0.94
Merged-chr15-78178545-3	chr15	78178449	78178649	+	585.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4441.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	7.67	8.3	8.56	3.62	6.55	7.84	2.66	4.88	13.18	9.54	14.07	4.39
Merged-chr14-21987882-3	chr14	21987716	21987916	+	585.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145459, exon 2 of 3)	5' UTR (NM_145459, exon 2 of 3)	1785.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	2.42	5.28	2.28	5.23	7.36	6.27	4.65	4.88	3.54	2.51	7.03	4.07
Merged-chr11-69235879-2	chr11	69235755	69235955	+	585.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008192, intron 2 of 18)	CpG	1167.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	3.63	6.79	1.71	1.61	6.95	6.27	7.97	3.59	6.49	9.54	5.53	4.39
Merged-chr12-91750992-2	chr12	91750909	91751109	+	585.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	35427.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.67	5.03	7.99	12.47	5.73	0.31	4.65	7.12	1.97	1.0	7.03	4.39
Merged-chr2-83621982-2	chr2	83621868	83622068	+	585.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-22610.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	5.65	2.26	5.13	0.4	7.36	5.33	4.98	4.04	7.47	9.54	1.0	1.25
Merged-chr3-95497836-1	chr3	95497736	95497936	+	585.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009709)	TTS (NM_009709)	-1374.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	4.02	3.42	0.8	6.55	6.9	6.31	5.07	5.9	5.02	5.53	2.19
Merged-chr9-20831108-2	chr9	20830984	20831184	+	585.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12580.0	NM_001030290	235033.0	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	3.63	4.28	3.42	4.83	6.55	5.96	6.98	4.18	6.69	6.03	2.51	8.14
Merged-chr9-65826824-3	chr9	65826743	65826943	+	585.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 1 of 9)	intron (NM_172536, intron 1 of 9)	721.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	6.46	2.01	4.56	7.24	6.55	2.2	1.66	3.0	5.7	4.52	8.04	6.89
Merged-chr9-41084886-1	chr9	41084786	41084986	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5380.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.42	2.77	0.57	4.02	3.68	5.64	6.98	3.67	2.95	6.03	1.0	2.51
Merged-chr6-38712995-2	chr6	38712895	38713095	+	585.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	ORR1D2|LTR|ERVL-MaLR	49926.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	10.5	6.54	8.56	8.45	3.27	8.47	3.32	5.02	8.46	5.02	10.05	3.45
Merged-chr15-101258606-1	chr15	101258506	101258706	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8240.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.27	1.51	3.42	0.0	6.95	8.15	4.98	4.93	16.92	3.01	6.03	3.13
Merged-chr11-116419467-1	chr11	116419367	116419567	+	585.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6435.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	9.29	4.53	5.13	8.85	3.27	1.25	4.98	3.84	9.24	7.03	9.55	6.58
Merged-chr1-23917036-1	chr1	23916936	23917136	+	585.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	RMER4B|LTR|ERVK	5345.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.0	0.5	0.0	0.4	1.23	0.31	0.66	2.38	7.28	9.54	8.04	1.57
Merged-chr19-55563003-1	chr19	55562903	55563103	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	139201.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.44	2.77	14.26	6.44	6.14	4.39	2.33	6.06	4.72	4.52	6.03	5.33
Merged-chr4-53145981-1	chr4	53145881	53146081	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	MIRb|SINE|MIR	13914.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.44	1.76	2.28	2.82	4.09	8.78	3.65	4.04	7.67	5.52	13.06	5.64
Merged-chr7-105954037-1	chr7	105953937	105954137	+	585.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029000)	promoter-TSS (NM_029000)	-67.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.21	10.04	21.1	5.95
Merged-chr15-98871375-2	chr15	98871280	98871480	+	585.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-175.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	7.67	6.79	6.28	5.23	5.32	7.84	6.31	3.98	7.87	7.53	9.55	3.13
Merged-chr14-40929366-1	chr14	40929266	40929466	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	18843.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	2.83	3.27	2.85	4.42	5.73	5.96	1.33	4.74	14.75	4.02	1.51	5.64
Merged-chr7-142334400-2	chr7	142334294	142334494	+	585.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	30892.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	5.65	9.06	1.71	9.65	4.09	3.76	1.0	5.64	8.06	12.05	10.55	5.33
Merged-chr14-54748442-1	chr14	54748342	54748542	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	33444.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	3.23	8.55	2.85	5.23	6.55	5.64	9.97	4.54	6.69	12.05	9.04	8.14
Merged-chr8-70751273-1	chr8	70751173	70751373	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001310465)	TTS (NM_001310465)	-3406.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	4.04	3.02	3.42	2.41	1.23	6.27	5.98	4.15	7.47	7.03	4.52	3.45
Merged-chr14-17409615-1	chr14	17409515	17409715	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-251345.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.65	1.01	0.0	4.02	0.82	6.9	6.31	5.19	5.11	2.51	5.53	1.57
Merged-chr1-161496311-2	chr1	161496191	161496391	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	1634.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.86	4.53	3.42	8.04	2.86	5.33	7.97	7.21	8.26	5.52	9.04	6.27
Merged-chr14-30764593-1	chr14	30764493	30764693	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	48978.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.85	4.02	3.42	8.45	10.64	9.41	2.66	4.96	7.67	11.55	5.53	7.83
Merged-chr8-70864087-2	chr8	70863984	70864184	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7076.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	6.46	5.03	15.97	3.62	6.14	9.41	4.32	5.44	9.83	11.05	6.53	11.9
Merged-chr10-122447496-1	chr10	122447396	122447596	+	585.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1003.0	NM_016847	54140.0	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	3.63	2.77	2.85	2.82	5.32	4.39	4.65	4.01	3.93	1.51	3.01	5.33
Merged-chr6-34964704-1	chr6	34964604	34964804	+	585.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	13295.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	2.02	5.53	2.85	4.02	8.18	6.59	7.97	3.62	2.56	8.54	4.52	7.83
Merged-chr11-84868956-1	chr11	84868856	84869056	+	585.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153144, intron 2 of 13)	intron (NM_153144, intron 2 of 13)	-1049.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	6.06	1.01	7.42	0.0	5.32	4.7	4.32	3.11	5.11	3.01	3.01	5.01
Merged-chr10-84405392-2	chr10	84405295	84405495	+	585.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	35076.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	9.29	8.3	6.85	12.87	4.91	8.78	4.32	5.94	4.52	0.0	4.52	2.82
Merged-chr9-78493433-2	chr9	78493345	78493545	+	585.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11721.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	2.42	5.79	5.7	8.45	10.23	5.33	7.31	6.81	9.05	3.51	5.02	5.64
Merged-chr9-66978181-2	chr9	66978073	66978273	+	585.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-2689.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	8.48	7.8	5.13	13.27	6.14	5.64	6.64	4.04	4.92	7.53	2.51	6.89
Merged-chr11-73199998-1	chr11	73199898	73200098	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	516.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0.81	2.01	3.42	3.22	1.64	5.96	4.32	4.51	5.11	3.51	1.0	4.7
Merged-chr7-132226857-2	chr7	132226776	132226976	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72135.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	2.83	5.03	5.7	3.22	6.95	2.51	0.66	4.88	12.78	11.55	9.55	3.76
Merged-chr3-87363933-1	chr3	87363833	87364033	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6052.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.81	3.52	3.42	3.62	2.05	5.02	2.66	4.43	5.9	2.01	6.53	2.82
Merged-chr2-11593525-2	chr2	11593422	11593622	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 5 of 11)	intron (NM_152824, intron 5 of 11)	9677.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	4.04	0.5	9.13	1.61	4.09	0.94	4.98	6.28	13.37	4.02	7.03	6.89
Merged-chr1-107585039-1	chr1	107584939	107585139	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4967.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	3.23	2.26	0.0	4.02	0.0	0.94	3.65	0.98	3.15	2.51	2.51	0.94
Merged-chr8-26123316-1	chr8	26123216	26123416	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357292, intron 2 of 6)	intron (NM_001357292, intron 2 of 6)	3506.0	NM_001357294	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	6.46	5.53	3.99	7.24	7.36	4.08	3.99	9.87	8.65	5.02	7.03	10.65
Merged-chr1-92215436-1	chr1	92215336	92215536	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35095.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	2.02	1.01	5.7	2.82	4.5	3.76	6.98	4.79	6.49	2.51	6.03	2.82
Merged-chr8-83700560-1	chr8	83700460	83700660	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1381.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	6.46	2.77	4.56	1.21	4.91	4.08	3.99	6.08	1.77	2.01	7.03	5.33
Merged-chr8-122315104-1	chr8	122315004	122315204	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	32963.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.42	3.52	5.13	5.23	3.27	5.33	3.65	6.25	5.7	4.02	5.53	4.39
Merged-chr18-84950818-1	chr18	84950718	84950918	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	706.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	6.46	10.06	3.99	3.62	5.73	4.7	4.98	9.87	4.33	3.01	7.54	4.07
Merged-chr18-46599853-1	chr18	46599753	46599953	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	MLT1D|LTR|ERVL-MaLR	2149.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.81	2.01	1.14	2.01	2.05	2.82	1.33	3.7	2.56	1.0	2.51	4.39
Merged-chr9-45677699-2	chr9	45677602	45677802	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 8 of 32)	intron (NM_001081270, intron 8 of 32)	150936.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.4	7.04	2.28	11.26	2.45	2.82	1.66	0.9	8.85	2.51	5.53	5.95
Merged-chr2-129258951-2	chr2	129258852	129259052	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38260.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	2.42	3.52	5.7	6.84	5.32	3.14	0.33	7.26	7.87	10.54	6.03	4.39
Merged-chr15-102239365-1	chr15	102239265	102239465	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042727, intron 6 of 7)	intron (NM_001042727, intron 6 of 7)	7135.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	4.44	3.52	2.28	2.01	4.09	3.76	3.65	3.28	11.41	12.05	11.56	4.07
Merged-chr4-124908390-1	chr4	124908290	124908490	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256432, intron 8 of 16)	intron (NM_001256432, intron 8 of 16)	-13608.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	8.08	5.28	5.7	7.64	6.14	7.53	1.99	4.68	3.74	7.03	3.52	3.76
Merged-chr4-10972808-1	chr4	10972708	10972908	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34811.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	1.62	0.5	1.14	0.8	5.73	3.14	6.64	4.12	7.67	3.51	9.55	7.21
Merged-chr11-116100046-1	chr11	116099946	116100146	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10189.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	3.63	3.52	4.56	2.01	9.0	5.96	1.99	5.19	5.31	3.51	8.04	0.94
Merged-chr11-119235868-1	chr11	119235768	119235968	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175430, intron 3 of 18)	B3A|SINE|B2	7296.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	5.65	4.78	2.28	4.02	2.05	8.15	1.33	3.87	7.67	5.52	7.54	4.07
Merged-chr7-29178340-1	chr7	29178240	29178440	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026545, intron 3 of 6)	intron (NM_026545, intron 3 of 6)	2333.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	8.08	3.27	3.42	0.4	4.5	0.63	1.33	0.45	2.95	0.5	0.0	2.19
Merged-chr12-83771061-2	chr12	83770963	83771163	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205343, intron 3 of 27)	intron (NM_001205343, intron 3 of 27)	7429.0	NM_130887	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	9.69	5.03	6.85	7.64	4.91	9.41	3.65	4.63	5.7	9.54	8.54	5.01
Merged-chr4-124646770-1	chr4	124646670	124646870	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10876.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	6.06	2.52	7.99	8.45	6.55	5.33	0.0	4.88	6.1	4.02	6.53	5.64
Merged-chr13-45401920-1	chr13	45401820	45402020	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	PB1D9|SINE|Alu	12178.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.44	4.28	0.0	4.02	6.95	7.53	3.32	4.07	4.72	3.01	1.0	0.31
Merged-chr12-34451484-1	chr12	34451384	34451584	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	77405.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.46	2.26	1.71	2.41	9.41	2.82	1.66	5.55	4.13	1.51	1.51	5.95
Merged-chr9-20898018-1	chr9	20897918	20898118	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016876, intron 3 of 10)	intron (NM_016876, intron 3 of 10)	572.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	7.67	4.53	1.14	4.02	2.05	4.08	2.66	4.23	5.7	11.55	4.52	5.33
Merged-chr11-65701097-1	chr11	65700997	65701197	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316368, intron 7 of 10)	RMER16_Mm|LTR|ERVK	33735.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	6.06	4.02	9.13	5.23	3.27	1.88	4.65	4.77	0.39	7.03	3.01	7.83
Merged-chr15-100914858-1	chr15	100914758	100914958	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077499, intron 1 of 26)	intron (NM_001077499, intron 1 of 26)	-21413.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	5.65	3.77	5.13	2.41	3.27	9.72	0.0	5.3	3.34	7.53	5.02	4.7
Merged-chr5-5658871-1	chr5	5658771	5658971	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172447, intron 1 of 22)	Lx3_Mus|LINE|L1	5361.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	2.42	1.76	2.28	2.01	4.91	5.33	3.99	4.54	2.16	1.51	5.02	4.39
Merged-chr1-184718756-1	chr1	184718656	184718856	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040627, exon 3 of 3)	non-coding (NR_040627, exon 3 of 3)	6259.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	3.23	5.53	6.85	0.8	2.86	3.45	4.65	4.04	1.77	6.03	2.01	1.88
Merged-chr16-90377626-1	chr16	90377526	90377726	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8771.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.23	3.02	1.14	6.44	4.09	3.45	5.98	4.32	4.72	5.52	3.01	6.89
Merged-chr11-75151660-1	chr11	75151560	75151760	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	16492.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.63	0.25	0.0	0.4	1.64	3.14	5.31	4.93	8.06	1.51	1.51	2.82
Merged-chr16-11686177-1	chr16	11686077	11686277	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	ORR1F|LTR|ERVL-MaLR	-93525.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	3.63	1.51	0.0	1.21	4.09	4.39	4.32	6.59	3.93	10.54	5.02	2.82
Merged-chr2-25292985-1	chr2	25292885	25293085	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008169, intron 19 of 19)	intron (NM_008169, intron 19 of 19)	1765.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	6.06	6.04	2.28	1.21	8.18	14.11	4.65	2.89	9.64	9.54	5.02	3.76
Merged-chr11-100583077-1	chr11	100582977	100583177	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019795, exon 14 of 14)	3' UTR (NM_019795, exon 14 of 14)	7186.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	2.42	2.52	12.55	1.61	9.41	1.25	4.65	4.09	7.47	2.01	2.51	1.88
Merged-chr12-40447804-1	chr12	40447704	40447904	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1751.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.25	3.77	0.0	2.01	3.68	0.0	4.98	5.13	4.92	4.02	3.01	0.63
Merged-chrX-74452928-1	chrX	74452828	74453028	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001161423, exon 10 of 10)	3' UTR (NM_001161423, exon 10 of 10)	23247.0	NM_010547	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	2.42	0.5	3.42	5.23	9.82	13.17	1.0	4.04	3.34	5.02	4.52	5.64
Merged-chr6-34942202-1	chr6	34942102	34942302	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21254.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	2.42	3.02	0.0	3.22	1.64	3.45	6.64	4.77	1.57	6.03	8.04	3.45
Merged-chr16-57390880-1	chr16	57390780	57390980	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37603.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.86	1.76	3.42	0.8	5.73	5.33	4.98	7.18	6.1	4.02	9.04	2.19
Merged-chr19-34921393-1	chr19	34921293	34921493	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-965.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	4.85	4.02	6.85	5.63	7.77	8.15	7.97	2.8	3.93	4.02	2.01	3.76
Merged-chr7-35028010-2	chr7	35027926	35028126	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	28540.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.02	1.51	1.14	2.41	4.91	0.63	4.32	4.01	8.65	3.51	1.51	5.95
Merged-chr7-4500602-1	chr7	4500502	4500702	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 1 of 21)	PB1D10|SINE|Alu	1078.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.46	1.51	7.99	0.8	5.73	3.14	2.99	3.98	8.46	5.02	5.02	6.27
Merged-chr10-127323005-1	chr10	127322905	127323105	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-702.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	3.63	1.26	4.56	1.21	4.5	3.14	3.99	3.98	5.11	6.53	3.01	8.14
Merged-chr4-141139234-1	chr4	141139134	141139334	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001277195, intron 1 of 3)	CpG	562.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	6.86	6.54	9.13	7.64	4.5	12.86	2.99	8.02	18.1	9.54	9.55	10.96
Merged-chr7-102540676-1	chr7	102540576	102540776	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5927.0	NM_147079	259083.0	Mm.377828	NM_147079	ENSMUSG00000073979	Olfr547	MOR31-4	olfactory receptor 547	protein-coding	4.04	1.01	3.99	3.22	5.32	7.21	0.66	7.43	0.59	0.0	1.0	1.88
Merged-chr11-120648245-1	chr11	120648145	120648345	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001204820)	promoter-TSS (NM_001204820)	92.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	8.48	6.29	3.42	3.22	9.0	18.81	1.66	4.74	10.23	9.54	6.53	4.07
Merged-chr1-161190435-1	chr1	161190335	161190535	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31121.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	1.21	2.77	1.14	3.22	6.55	2.51	1.66	5.89	5.9	0.5	5.53	0.94
Merged-chr14-17404217-1	chr14	17404117	17404317	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-256743.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.81	0.5	0.0	0.0	6.14	1.25	1.99	5.36	2.95	5.52	4.02	3.13
Merged-chr3-107036706-1	chr3	107036606	107036806	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	544.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	2.83	0.25	0.57	2.41	4.09	4.7	2.33	4.6	1.77	2.01	2.01	5.01
Merged-chr4-83322945-1	chr4	83322845	83323045	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	1244.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.81	3.27	2.85	5.63	3.68	5.02	4.32	4.63	5.51	4.02	1.0	4.39
Merged-chr7-68656542-1	chr7	68656442	68656642	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	38086.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	2.42	4.53	7.99	3.22	4.91	5.64	3.99	6.39	8.85	4.02	2.01	4.39
Merged-chr9-121284710-1	chr9	121284610	121284810	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7538.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	5.65	8.8	1.71	10.05	9.0	6.59	0.66	2.86	5.7	12.55	8.54	3.45
Merged-chr1-171474420-2	chr1	171474307	171474507	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-29071.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.46	6.29	5.13	4.42	6.95	5.33	8.3	6.0	2.16	1.0	0.0	3.45
Merged-chrX-36851445-1	chrX	36851345	36851545	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029951, intron 6 of 6)	ID_B1|SINE|B4	12801.0	NM_029951	77644.0	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	4.04	4.78	3.42	5.23	1.64	5.33	2.33	5.05	5.51	9.04	5.53	8.46
Merged-chr5-63966102-1	chr5	63966002	63966202	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2795.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	6.46	1.51	6.85	3.22	2.45	1.88	3.65	5.86	5.11	6.03	1.51	8.14
Merged-chr2-118901874-1	chr2	118901774	118901974	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	CpG	259.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	7.67	4.28	1.71	1.61	2.86	2.51	1.99	3.48	7.08	14.56	10.05	8.46
Merged-chr19-16109037-1	chr19	16108937	16109137	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23794.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.65	0.0	4.56	0.4	6.55	7.21	2.66	3.2	9.64	10.54	2.01	3.45
Merged-chr4-136052583-1	chr4	136052483	136052683	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_154592).3	promoter-TSS (NR_154592).3	788.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	1.62	3.77	1.14	4.02	5.32	1.25	5.98	1.35	3.54	4.02	3.01	6.58
Merged-chr2-84458120-1	chr2	84458020	84458220	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177320, exon 3 of 8)	exon (NM_001177320, exon 3 of 8)	16054.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.42	0.5	3.42	1.21	5.73	2.2	4.32	6.48	2.95	1.0	2.01	4.07
Merged-chr14-119003479-2	chr14	119003397	119003597	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081252, intron 34 of 38)	B3|SINE|B2	65565.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	4.44	3.27	1.71	0.8	5.32	10.03	5.65	6.11	9.24	5.52	15.07	3.76
Merged-chr8-75101432-1	chr8	75101332	75101532	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010442)	TTS (NM_010442)	7814.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	2.02	11.07	1.71	1.61	4.91	16.31	4.65	3.93	8.85	15.57	0.5	0.63
Merged-chr8-6140292-1	chr8	6140192	6140392	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-1035005.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.42	4.53	3.99	6.03	0.82	0.63	1.66	0.7	7.08	7.03	10.05	1.88
Merged-chr19-4046040-1	chr19	4045940	4046140	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3819.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	2.83	3.52	3.99	2.41	3.68	6.59	1.66	0.81	8.46	7.03	7.03	9.4
Merged-chr4-43724948-1	chr4	43724848	43725048	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2250.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	2.42	3.02	5.13	2.41	2.45	5.96	3.65	4.09	2.75	6.53	3.01	0.0
Merged-chr2-119050429-2	chr2	119050328	119050528	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	3309.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	3.23	9.06	3.42	10.86	8.59	6.59	2.99	4.12	4.92	4.02	8.54	5.01
Merged-chr17-85218294-1	chr17	85218194	85218394	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028576, intron 3 of 10)	MLT1H1|LTR|ERVL-MaLR	127594.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	2.42	1.01	3.42	2.41	5.73	2.51	4.32	6.62	0.98	1.0	2.01	4.39
Merged-chr2-26903552-1	chr2	26903452	26903652	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-665.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	1.62	1.51	1.71	2.82	6.55	3.45	6.31	5.02	4.33	0.5	1.0	4.7
Merged-chr14-120325187-1	chr14	120325087	120325287	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_207515, exon 2 of 8)	5' UTR (NM_207515, exon 2 of 8)	18735.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.62	1.01	0.0	3.22	6.14	5.96	1.66	4.15	5.11	0.5	3.01	3.13
Merged-chr5-24036919-1	chr5	24036819	24037019	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-6229.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.4	3.02	3.99	5.63	1.23	3.14	5.31	6.9	5.9	3.51	7.54	3.45
Merged-chr12-111375900-1	chr12	111375800	111376000	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1818.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	4.04	2.01	1.14	8.04	4.91	3.14	3.32	3.03	3.15	4.02	2.01	5.01
Merged-chr17-7874373-1	chr17	7874273	7874473	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-51627.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.65	1.76	5.7	9.25	9.0	1.57	1.99	4.54	8.06	3.01	7.03	1.25
Merged-chrX-168415582-1	chrX	168415482	168415682	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033330, intron 3 of 19)	L1M4a1|LINE|L1	161649.0	NM_001033330	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	5.25	3.02	5.13	0.0	3.27	5.33	2.99	4.12	7.08	7.03	4.02	3.13
Merged-chr15-73183617-1	chr15	73183517	73183717	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	1330.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	9.69	5.03	6.85	2.41	0.82	5.33	1.66	4.82	2.56	5.02	2.01	3.45
Merged-chr3-142688676-1	chr3	142688576	142688776	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR1B-int|LTR|ERV1	-12372.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	4.44	2.77	11.41	5.23	7.36	8.47	1.99	1.85	12.98	2.51	8.04	6.58
Merged-chr7-55843034-1	chr7	55842934	55843134	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	963.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.46	4.28	10.84	5.63	2.86	7.21	6.31	3.84	6.49	6.03	6.03	4.7
Merged-chr2-34642623-1	chr2	34642523	34642723	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112609.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	1.62	1.26	0.0	0.0	6.55	6.27	2.33	5.41	8.06	8.03	5.53	0.94
Merged-chr11-85925583-1	chr11	85925483	85925683	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28818.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	3.63	3.02	6.85	1.61	6.55	4.08	4.65	4.37	3.74	3.01	8.04	3.45
Merged-chr14-27317366-1	chr14	27317266	27317466	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-18671.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.62	3.52	3.42	3.62	4.09	5.64	3.65	8.55	6.1	4.52	4.52	4.07
Merged-chr1-78914132-1	chr1	78914032	78914232	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	97221.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.0	0.0	0.57	1.61	2.86	5.64	3.99	4.77	1.57	1.0	2.01	1.88
Merged-chr10-67318262-1	chr10	67318162	67318362	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32981.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.81	8.3	9.13	5.23	4.91	4.7	4.32	9.39	6.1	4.52	11.56	7.83
Merged-chr3-104777490-1	chr3	104777390	104777590	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183224)	promoter-TSS (NM_183224)	57.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	2.02	3.02	4.56	1.21	0.0	5.64	1.99	4.54	4.72	2.51	1.51	5.64
Merged-chr5-36518542-1	chr5	36518442	36518642	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	12081.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.04	3.02	2.28	4.02	6.95	1.57	4.65	5.64	1.57	2.01	3.01	0.0
Merged-chr12-102711012-1	chr12	102710912	102711112	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6143.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.85	4.02	5.13	2.82	5.73	2.51	1.99	5.33	2.36	1.0	9.55	4.07
Merged-chr4-3640085-1	chr4	3639985	3640185	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16421.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.04	4.02	3.42	0.8	2.05	7.53	3.32	2.19	9.83	8.03	12.06	12.22
Merged-chr2-124608209-1	chr2	124608109	124608309	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-2087.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.02	2.26	0.0	2.41	1.64	2.82	2.66	2.44	11.01	7.03	1.51	6.58
Merged-chr8-86585296-1	chr8	86585196	86585396	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18706.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	1.62	5.28	5.13	6.44	11.86	5.96	0.33	2.75	9.05	4.52	9.04	3.13
Merged-chr6-24967869-1	chr6	24967769	24967969	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11744.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	1.21	1.51	2.28	0.8	6.55	2.2	2.99	4.21	3.54	6.03	3.52	1.88
Merged-chr11-70130119-2	chr11	70130021	70130221	+	584.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145137)	promoter-TSS (NM_145137)	-236.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	6.06	7.04	7.99	10.05	14.73	4.08	4.98	5.86	7.47	5.52	7.03	6.89
Merged-chr2-122143979-3	chr2	122143888	122144088	+	584.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	MTD|LTR|ERVL-MaLR	-3699.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	11.71	2.77	22.82	6.84	5.32	5.02	8.3	5.64	7.87	4.52	9.55	9.08
Merged-chr9-45138601-2	chr9	45138487	45138687	+	584.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013390)	promoter-TSS (NM_001013390)	-455.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	5.25	5.03	8.56	2.41	2.45	4.7	5.98	4.79	3.15	3.01	1.51	1.88
Merged-chr9-99580833-2	chr9	99580730	99580930	+	584.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031403, intron 5 of 7)	B2_Mm2|SINE|B2	5031.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	7.27	6.04	3.99	4.42	8.18	5.02	5.65	4.51	12.39	6.53	8.04	5.01
Merged-chr4-55650402-2	chr4	55650348	55650548	+	584.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117973.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.85	1.51	0.0	1.61	3.68	0.94	2.33	4.15	6.69	6.03	5.53	3.45
Merged-chr2-129615005-2	chr2	129614895	129615095	+	584.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177647, intron 2 of 5)	intron (NM_001177647, intron 2 of 5)	19533.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	11.31	6.79	2.28	2.41	8.18	2.82	7.31	5.07	5.51	5.02	3.01	3.45
Merged-chr7-16229212-1	chr7	16229112	16229312	+	584.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7180.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	1.62	1.01	0.57	3.22	8.59	2.51	1.0	4.93	7.67	13.56	9.55	7.52
Merged-chr6-86547494-2	chr6	86547407	86547607	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	MIR3|SINE|MIR	20106.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	3.23	10.56	9.13	2.82	5.32	4.7	0.0	0.42	8.85	3.51	3.01	6.58
Merged-chr9-56744533-2	chr9	56744430	56744630	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181074, intron 2 of 6)	intron (NM_181074, intron 2 of 6)	51780.0	NM_001361118	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	5.65	6.54	9.7	12.87	1.64	5.02	7.31	4.6	5.31	4.02	7.54	3.45
Merged-chr7-73595982-1	chr7	73595882	73596082	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-37587.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	2.02	3.27	1.71	2.82	6.14	7.21	3.65	2.86	4.72	3.51	3.52	3.45
Merged-chr19-40691992-1	chr19	40691892	40692092	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	32222.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.65	3.02	3.42	2.01	4.91	6.27	2.99	6.31	5.11	8.54	5.02	1.25
Merged-chr14-105262536-2	chr14	105262428	105262628	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029561, intron 1 of 7)	B3A|SINE|B2	3855.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	2.42	6.54	5.13	3.22	4.91	6.9	2.99	6.34	8.26	6.53	9.55	7.21
Merged-chr11-78360676-2	chr11	78360575	78360775	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13965.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	8.08	5.28	4.56	4.83	8.59	6.27	6.98	3.64	7.87	10.04	6.03	3.13
Merged-chr2-118373126-1	chr2	118373026	118373226	+	584.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201367, exon 1 of 3)	exon (NM_201367, exon 1 of 3)	293.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	7.27	7.04	3.99	3.62	3.27	2.51	8.64	4.01	7.87	9.54	11.05	8.77
Merged-chr10-9900683-1	chr10	9900583	9900783	+	584.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081344, exon 1 of 26)	exon (NM_001081344, exon 1 of 26)	357.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	9.29	9.56	5.7	12.07	9.41	3.45	10.96	12.0	6.29	9.54	12.56	6.58
Merged-chr14-34502177-1	chr14	34502077	34502277	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009758, intron 1 of 12)	CpG	369.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	4.04	5.53	11.41	8.45	7.36	6.27	4.98	5.97	4.92	7.53	6.53	8.14
Merged-chr19-6477198-2	chr19	6477120	6477320	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	58482.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.85	6.04	10.27	6.03	5.73	5.96	1.66	7.79	9.24	5.02	7.54	10.65
Merged-chr18-57879356-2	chr18	57879279	57879479	+	584.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009194, exon 1 of 27)	exon (NM_009194, exon 1 of 27)	701.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.83	5.03	10.27	5.23	7.77	7.53	8.64	4.09	5.11	5.02	5.02	7.52
Merged-chr12-34751714-1	chr12	34751614	34751814	+	584.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	165381.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.04	1.51	2.28	2.82	7.77	4.39	3.32	7.18	1.38	2.01	2.51	0.94
Merged-chr12-84755472-3	chr12	84755398	84755598	+	584.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	17614.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	4.85	5.79	7.42	6.84	1.64	6.27	2.33	5.21	8.65	3.01	6.03	11.9
Merged-chr14-21068814-1	chr14	21068714	21068914	+	584.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134079, intron 1 of 10)	intron (NM_134079, intron 1 of 10)	-7338.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.85	3.02	13.12	6.03	9.0	5.33	7.97	5.5	5.31	10.04	7.54	6.27
Merged-chr17-47756267-3	chr17	47756216	47756416	+	584.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	18385.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	1.61	5.73	1.88	1.0	0.93	3.54	6.03	2.01	4.39
Merged-chr17-84391119-1	chr17	84391019	84391219	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 25 of 37)	ORR1E|LTR|ERVL-MaLR	75089.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.23	7.04	2.28	7.24	6.14	4.08	2.99	8.21	3.54	3.01	5.02	5.95
Merged-chrX-12965347-1	chrX	12965247	12965447	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-12526.0	NR_153101	75037.0	Mm.387976	NR_153101		4930500G05Rik	-	RIKEN cDNA 4930500G05 gene	ncRNA	4.04	3.02	2.85	8.45	6.14	11.6	1.0	4.01	7.47	4.52	5.02	2.19
Merged-chr10-100147909-1	chr10	100147809	100148009	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	132088.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.65	1.51	0.0	2.01	0.82	5.96	5.98	3.53	7.08	7.53	5.02	2.51
Merged-chr1-131076716-1	chr1	131076616	131076816	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	21127.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.63	4.53	5.13	3.62	0.0	13.17	2.99	2.89	7.28	11.55	5.02	1.57
Merged-chr12-104990922-1	chr12	104990822	104991022	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	7755.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	2.02	2.01	1.14	7.24	1.64	6.27	3.99	4.09	3.74	0.0	5.02	2.82
Merged-chr19-23782095-1	chr19	23781995	23782195	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	23219.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.4	0.0	0.0	5.63	0.41	5.02	7.31	3.08	5.11	1.51	5.02	3.45
Merged-chr18-4347167-1	chr18	4347067	4347267	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5786.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.46	5.79	6.28	4.02	6.55	5.64	16.94	4.07	5.11	4.02	3.01	5.95
Merged-chr11-100298443-1	chr11	100298343	100298543	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21506.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	11.31	4.78	7.42	2.41	11.05	9.41	1.0	3.45	8.85	14.06	7.54	3.45
Merged-chr6-38662978-1	chr6	38662878	38663078	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001101507)	promoter-TSS (NM_001101507)	-91.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.85	2.01	2.28	6.84	2.45	2.2	6.31	3.93	3.54	3.51	6.53	5.01
Merged-chrX-101527556-1	chrX	101527456	101527656	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR31FA_MM|LTR|ERVK	-5179.0	NM_001290729	270627.0	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	2.42	5.03	4.56	2.41	6.14	11.6	1.33	6.17	6.29	5.02	2.01	3.13
Merged-chr1-15799842-2	chr1	15799748	15799948	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5798.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	8.08	4.02	9.13	8.45	8.59	5.02	2.66	5.8	3.15	4.52	5.02	3.13
Merged-chr5-137749378-1	chr5	137749278	137749478	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	3409.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	3.23	2.52	3.42	4.02	3.27	4.08	4.32	4.46	2.36	3.51	5.53	7.83
Merged-chr8-20321398-1	chr8	20321298	20321498	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-23966.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	1.62	6.29	4.56	8.85	1.64	5.02	2.66	4.96	5.9	6.03	3.01	2.19
Merged-chr19-55901818-1	chr19	55901718	55901918	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	6497.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.4	1.51	1.14	2.41	1.64	3.76	6.31	4.99	2.56	0.0	1.0	3.13
Merged-chr12-36117328-1	chr12	36117228	36117428	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025840, intron 6 of 11)	intron (NM_025840, intron 6 of 11)	26949.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0.81	1.01	1.14	2.41	0.82	0.31	4.32	4.43	0.39	0.5	0.0	0.31
Merged-chr5-100917579-1	chr5	100917479	100917679	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71350.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	4.44	1.26	6.28	2.41	6.55	7.84	2.99	3.87	5.51	5.02	11.05	2.82
Merged-chr15-52953568-1	chr15	52953468	52953668	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241123.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	3.23	2.01	2.28	4.02	4.09	3.45	1.33	8.1	4.52	10.04	17.08	4.07
Merged-chr11-103055018-1	chr11	103054918	103055118	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008707, intron 4 of 11)	intron (NM_008707, intron 4 of 11)	25930.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	4.85	3.02	1.71	2.82	10.23	2.2	1.99	3.98	4.72	0.0	9.04	3.13
Merged-chr4-88726000-2	chr4	88725888	88726088	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3480.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	8.08	4.78	4.56	5.63	6.14	2.51	0.66	3.17	6.69	11.55	6.03	2.51
Merged-chr7-19416910-1	chr7	19416810	19417010	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_073014)	TTS (NR_073014)	4507.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	2.83	1.51	3.42	2.01	4.09	3.76	4.65	4.74	0.98	0.5	2.01	5.01
Merged-chr2-52262353-1	chr2	52262253	52262453	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010889, intron 54 of 156)	MER20|DNA|hAT-Charlie	-28649.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	3.23	3.02	2.28	1.61	2.86	6.9	6.64	4.15	7.28	6.03	3.52	4.39
Merged-chr12-80014016-1	chr12	80013916	80014116	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77752.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.44	1.01	2.28	2.41	3.27	5.33	4.65	4.04	1.77	6.53	2.01	5.01
Merged-chr6-134527778-1	chr6	134527678	134527878	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	39135.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.46	2.01	2.85	3.22	3.27	7.21	3.32	4.65	1.57	1.51	3.01	0.94
Merged-chr8-26723319-1	chr8	26723219	26723419	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101104.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.62	1.51	3.42	0.0	4.09	5.96	3.99	3.17	12.59	14.56	6.03	3.45
Merged-chr15-27785431-1	chr15	27785331	27785531	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 34 of 56)	Lx8b|LINE|L1	-103889.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	9.69	4.02	7.42	3.22	1.23	6.9	4.98	4.93	3.34	4.52	3.01	3.45
Merged-chr1-161180836-3	chr1	161180741	161180941	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21527.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	6.46	9.31	2.28	2.41	3.27	5.64	2.66	4.35	4.52	3.51	13.06	8.14
Merged-chr10-120208200-1	chr10	120208100	120208300	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-626.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	7.67	8.3	1.14	2.82	4.91	4.39	0.66	3.84	8.06	5.02	3.01	1.88
Merged-chr7-142497965-1	chr7	142497865	142498065	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163666)	promoter-TSS (NM_001163666)	-871.0	NM_001347549	21957.0	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	4.04	3.77	2.28	3.22	2.86	3.14	6.64	3.7	7.08	9.54	13.06	6.58
Merged-chr8-40497179-1	chr8	40497079	40497279	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13300.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	2.42	4.02	0.0	3.22	3.27	5.33	4.32	4.65	0.79	0.0	2.01	1.57
Merged-chr9-100529089-1	chr9	100528989	100529189	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	RLTR30D_MM|LTR|ERV1	17045.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	10.5	5.28	6.85	4.42	4.09	5.96	2.66	3.87	10.82	4.52	3.01	1.25
Merged-chr5-98713073-1	chr5	98712973	98713173	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 3 of 5)	intron (NM_001024614, intron 3 of 5)	-141342.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	3.23	3.27	1.14	3.22	4.5	1.88	5.65	4.99	4.13	1.51	4.02	2.51
Merged-chr5-101829189-1	chr5	101829089	101829289	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64059.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.25	9.81	5.13	2.01	2.45	6.59	1.33	1.29	3.54	9.54	5.02	5.01
Merged-chr11-82834141-1	chr11	82834041	82834241	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001164570, exon 2 of 8)	5' UTR (NM_001164570, exon 2 of 8)	-5098.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	6.06	4.02	0.57	0.8	3.27	5.96	1.66	4.49	6.49	0.0	5.02	4.39
Merged-chr13-107940434-1	chr13	107940334	107940534	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50370.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.85	0.5	1.71	1.21	3.27	0.31	7.31	5.61	6.88	0.5	7.54	0.94
Merged-chr11-65740694-1	chr11	65740594	65740794	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316367, intron 3 of 11)	URR1B|DNA|hAT-Charlie	-5862.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	2.02	2.01	3.42	2.41	6.14	4.08	2.66	3.2	5.11	8.54	8.04	3.76
Merged-chr15-27563617-1	chr15	27563517	27563717	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020332, intron 5 of 11)	intron (NM_020332, intron 5 of 11)	-7877.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	3.23	2.26	1.14	0.8	6.55	5.33	4.65	4.65	3.93	1.0	4.02	3.76
Merged-chr12-98799834-1	chr12	98799734	98799934	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081191, intron 35 of 43)	intron (NM_001081191, intron 35 of 43)	28812.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	2.83	3.77	2.28	15.28	4.09	4.39	2.66	6.9	5.31	1.0	4.02	5.33
Merged-chr17-33827035-2	chr17	33826935	33827135	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_103515)	TTS (NR_103515)	2390.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	8.08	6.79	0.0	7.24	6.55	6.9	2.99	6.95	10.23	7.03	6.03	3.76
Merged-chr6-113640395-1	chr6	113640295	113640495	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	1928.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	2.83	2.26	1.14	0.0	13.91	5.64	1.0	5.21	8.85	10.04	9.55	4.39
Merged-chr4-156134241-1	chr4	156134141	156134341	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001220499)	TTS (NM_001220499)	6753.0	NM_001220499	100045778.0		NM_001220499	ENSMUSG00000110404	Rnf223	9930005F22Rik	ring finger 223	protein-coding	6.06	5.03	4.56	1.61	2.86	6.59	1.0	3.5	2.56	1.51	1.51	1.57
Merged-chr9-83574444-1	chr9	83574344	83574544	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	26106.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.62	0.5	3.42	2.41	2.45	1.88	4.65	3.98	2.36	0.5	0.5	2.19
Merged-chr19-40697765-1	chr19	40697665	40697865	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	37995.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.81	0.75	5.13	2.41	7.36	2.51	6.98	5.13	5.31	1.51	9.04	3.76
Merged-chr19-11911258-1	chr19	11911158	11911358	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	4.85	5.28	3.42	0.8	9.0	7.84	0.0	4.6	7.67	3.01	1.0	6.58
Merged-chr18-56407564-2	chr18	56407457	56407657	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	7217.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.83	1.51	9.7	8.04	3.68	6.27	0.66	7.12	4.13	6.53	7.54	7.83
Merged-chr2-115856053-1	chr2	115855953	115856153	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	208566.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	4.04	2.52	1.71	2.01	3.27	9.41	11.63	5.66	2.36	2.51	4.02	3.13
Merged-chr6-85391947-1	chr6	85391847	85392047	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17313.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	4.85	2.77	3.42	1.61	2.45	1.57	4.65	4.85	4.52	2.51	4.02	0.63
Merged-chr18-84684736-1	chr18	84684636	84684836	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	966.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.23	3.02	4.56	3.62	7.36	4.7	1.0	5.07	3.15	4.52	4.52	3.45
Merged-chrX-23600948-1	chrX	23600848	23601048	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-92103.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	4.04	2.01	6.85	4.02	2.45	5.64	1.99	4.99	6.69	2.51	8.54	5.01
Merged-chr15-88921597-2	chr15	88921455	88921655	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357736, intron 8 of 11)	intron (NM_001357736, intron 8 of 11)	32863.0	NM_001357736	239591.0	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	3.23	6.54	3.99	3.62	5.73	4.08	1.0	3.2	4.52	5.52	11.05	9.4
Merged-chr15-25625566-1	chr15	25625466	25625666	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	3016.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	1.62	5.28	17.11	9.25	0.82	2.51	2.99	1.07	0.98	1.0	0.5	2.82
Merged-chr4-150582632-1	chr4	150582532	150582732	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	B1_Mus2|SINE|Alu	69542.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.21	2.26	5.7	9.65	1.23	3.14	5.98	1.71	4.52	2.51	1.0	0.94
Merged-chr15-88469033-1	chr15	88468933	88469133	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-131269.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	2.42	1.76	8.56	2.41	4.09	2.51	4.65	5.92	1.97	4.02	4.52	3.13
Merged-chr19-59114454-1	chr19	59114354	59114554	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-38385.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.81	3.77	4.56	3.22	2.45	5.33	2.66	1.99	2.16	5.52	1.0	2.51
Merged-chr7-141100173-1	chr7	141100073	141100273	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023059, intron 1 of 9)	CpG	373.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	3.63	3.52	0.57	4.83	3.68	2.51	4.32	4.71	4.13	6.53	4.02	4.7
Merged-chr4-102741678-1	chr4	102741578	102741778	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18457.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.81	1.51	4.56	0.8	7.77	2.2	1.66	4.07	0.98	4.02	6.03	0.63
Merged-chr13-113602084-2	chr13	113601987	113602187	+	583.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	ORR1B2|LTR|ERVL-MaLR	16477.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.65	2.77	1.14	2.41	2.86	12.86	6.64	4.85	9.64	6.53	4.52	5.01
Merged-chr18-4279341-2	chr18	4279242	4279442	+	583.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	73611.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.63	5.53	2.85	3.22	6.55	8.15	3.32	5.21	8.26	13.05	6.53	6.58
Merged-chr9-14860095-2	chr9	14859986	14860186	+	583.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310734)	promoter-TSS (NM_001310734)	-124.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	5.65	5.79	2.28	4.83	4.5	6.59	8.97	3.42	5.11	13.05	10.55	7.52
Merged-chr5-66149645-2	chr5	66149540	66149740	+	583.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	1338.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.83	8.3	2.85	2.01	6.95	19.13	2.99	4.35	8.06	12.05	13.06	2.19
Merged-chr11-100425982-2	chr11	100425897	100426097	+	583.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026561, intron 8 of 8)	intron (NM_026561, intron 8 of 8)	10303.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	6.06	5.79	12.55	6.03	7.77	14.42	3.65	5.94	2.36	4.02	1.0	0.94
Merged-chr18-82784889-3	chr18	82784781	82784981	+	583.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25842.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	6.86	7.8	7.99	6.84	4.5	7.53	8.64	6.06	8.46	6.03	8.54	6.27
Merged-chr12-21129652-2	chr12	21129550	21129750	+	583.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 1 of 26)	intron (NM_001004364, intron 1 of 26)	17894.0	NM_001135192	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	8.88	3.27	9.13	10.86	6.14	5.33	4.65	5.05	2.36	0.5	2.01	2.19
Merged-chr4-115984286-2	chr4	115984180	115984380	+	583.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33644.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	7.27	4.78	4.56	4.02	8.18	3.76	2.99	4.26	7.87	9.54	13.06	9.08
Merged-chr5-31563786-2	chr5	31563675	31563875	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7622.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	7.27	6.54	11.41	4.02	5.73	4.39	1.99	5.89	8.85	14.56	11.05	4.07
Merged-chr15-78589759-1	chr15	78589659	78589859	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7288.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	3.52	1.71	1.61	4.09	5.33	4.32	4.54	5.51	2.51	1.0	2.51
Merged-chr1-128675739-1	chr1	128675639	128675839	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83440.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.62	5.53	0.0	4.02	3.68	5.02	3.65	5.94	4.72	5.02	7.03	2.19
Merged-chr1-45817105-2	chr1	45816995	45817195	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028599, intron 13 of 20)	intron (NM_028599, intron 13 of 20)	21929.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	7.27	4.28	5.7	9.65	10.64	5.33	3.65	6.0	8.65	14.06	4.02	5.95
Merged-chr1-34522438-1	chr1	34522338	34522538	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13210.0	NM_007685	12627.0	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	2.02	5.79	6.85	4.02	6.55	2.2	4.98	4.99	2.56	4.52	4.02	4.07
Merged-chr12-32340600-1	chr12	32340500	32340700	+	583.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38189.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.83	3.02	3.42	3.22	2.86	0.94	0.66	0.93	5.7	8.03	9.55	3.45
Merged-chr5-145280898-1	chr5	145280798	145280998	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2445.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	7.67	7.29	1.14	9.65	4.09	4.08	9.3	2.72	5.11	5.02	8.04	5.01
Merged-chr2-12389240-1	chr2	12389140	12389340	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355539, intron 1 of 6)	intron (NM_001355539, intron 1 of 6)	30220.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	4.04	3.77	2.28	6.84	2.86	3.14	7.97	5.19	6.69	4.52	5.53	3.13
Merged-chr14-41017663-1	chr14	41017563	41017763	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Kanga1|DNA|TcMar-Tc2	-3830.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.4	3.02	4.56	3.22	5.73	5.02	2.33	5.16	1.97	3.01	7.54	0.94
Merged-chr2-93192809-1	chr2	93192709	93192909	+	583.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356537, intron 2 of 8)	intron (NM_001356537, intron 2 of 8)	5261.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	6.06	2.77	2.85	2.01	1.64	1.88	0.66	2.61	7.67	2.51	10.55	7.21
Merged-chr16-37854842-2	chr16	37854783	37854983	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13517.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	3.63	4.78	0.57	2.82	2.05	2.2	5.98	4.54	6.1	7.03	7.54	5.95
Merged-chr9-61435252-2	chr9	61435146	61435346	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62880.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.44	9.31	7.42	12.47	5.32	5.64	3.32	12.0	12.19	6.53	5.02	3.45
Merged-chr2-143844629-1	chr2	143844529	143844729	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291061, intron 4 of 7)	MLT1A1|LTR|ERVL-MaLR	18544.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	6.06	1.51	2.28	5.63	6.55	5.33	3.32	4.15	5.7	3.51	4.02	2.51
Merged-chr18-9712376-1	chr18	9712276	9712476	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	4728.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	1.62	1.01	3.42	1.21	6.55	1.88	4.65	7.09	1.38	2.51	0.5	1.25
Merged-chr15-76724731-1	chr15	76724631	76724831	+	583.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-886.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.85	1.26	4.56	4.83	5.73	3.45	0.66	3.2	2.56	4.52	6.03	6.89
Merged-chr9-3001352-1	chr9	3001252	3001452	+	583.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	37391.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	4.85	4.28	1.14	2.82	3.27	1.57	7.97	0.0	7.67	8.03	9.04	10.65
Merged-chr13-45477468-3	chr13	45477346	45477546	+	583.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29998.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	6.86	9.31	7.42	11.26	10.23	7.53	1.33	4.6	6.88	10.04	3.52	7.21
Merged-chr7-4657711-2	chr7	4657587	4657787	+	583.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	L2c|LINE|L2	1263.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	4.85	4.53	1.71	5.63	4.5	9.72	2.99	4.18	2.56	2.01	2.01	4.7
Merged-chr10-99279729-1	chr10	99279629	99279829	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16498.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	2.83	1.76	5.7	3.62	5.32	5.33	4.32	5.52	0.79	2.51	2.51	4.07
Merged-chr13-37851854-1	chr13	37851754	37851954	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	24461.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.81	1.51	3.42	4.02	5.32	7.21	2.66	5.66	3.54	1.51	1.0	2.82
Merged-chr17-8390686-1	chr17	8390586	8390786	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161832, intron 2 of 10)	intron (NM_001161832, intron 2 of 10)	-1218.0	NR_045795	100504601.0	Mm.365131	NR_045795	ENSMUSG00000097796	Gm16702	AU016609	predicted gene, 16702	ncRNA	6.46	8.55	4.56	5.63	8.18	5.64	2.66	13.43	6.49	2.51	10.55	8.46
Merged-chr11-83058086-1	chr11	83057986	83058186	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7026.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	2.83	5.28	3.42	2.41	8.59	7.53	4.98	6.53	9.24	9.04	11.05	7.83
Merged-chr14-44847950-1	chr14	44847850	44848050	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11425.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	7.67	7.55	10.27	6.44	2.45	5.02	1.33	8.69	8.46	7.03	3.52	1.25
Merged-chr6-48830591-1	chr6	48830491	48830691	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10397.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.25	1.01	3.42	6.84	2.86	5.96	2.99	4.82	4.13	7.03	3.01	4.07
Merged-chr11-60114432-1	chr11	60114332	60114532	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9419.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.81	2.01	1.14	4.42	5.73	6.9	3.32	4.88	2.95	3.51	1.51	3.45
Merged-chr4-3512564-1	chr4	3512464	3512664	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-24526.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	4.44	0.0	5.13	3.22	6.14	3.45	0.33	3.03	7.47	8.54	9.55	5.64
Merged-chr15-62223604-1	chr15	62223504	62223704	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	-4153.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.65	2.01	1.14	0.0	6.55	2.51	3.65	2.78	1.38	2.01	3.52	1.57
Merged-chr10-85829436-1	chr10	85829336	85829536	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-42395.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	3.63	4.02	3.99	4.83	5.32	6.9	3.99	9.45	1.77	1.0	1.51	0.31
Merged-chr12-73545891-1	chr12	73545791	73545991	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178715, exon 1 of 1)	exon (NM_178715, exon 1 of 1)	504.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	3.63	3.52	3.99	6.03	5.73	6.59	6.31	5.21	4.92	0.0	7.03	3.45
Merged-chr15-72873278-2	chr15	72873182	72873382	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164642, intron 16 of 16)	L1MB5|LINE|L1	-62958.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.63	4.78	6.85	3.62	3.27	5.02	5.31	6.25	8.46	8.54	9.04	7.21
Merged-chr8-94528375-1	chr8	94528275	94528475	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4653.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	2.83	6.54	6.28	8.04	9.82	8.15	4.65	3.81	11.6	6.03	18.59	7.52
Merged-chr1-9850286-1	chr1	9850186	9850386	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037759, intron 1 of 16)	L2a|LINE|L2	2005.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	5.25	1.26	4.56	7.24	3.68	5.02	3.65	4.26	13.77	4.02	10.05	2.51
Merged-chr5-96966362-1	chr5	96966262	96966462	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31327.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	2.83	6.29	0.0	4.02	15.14	4.08	2.99	6.62	6.69	3.01	3.52	1.88
Merged-chr11-69043878-1	chr11	69043778	69043978	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1759.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	7.27	4.28	5.13	8.85	7.77	3.14	2.66	4.85	4.52	8.03	6.03	4.39
Merged-chr15-97593911-1	chr15	97593811	97594011	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111911.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	2.42	1.51	2.28	1.61	1.23	1.88	5.31	4.18	2.75	3.01	5.02	4.39
Merged-chr5-76075568-1	chr5	76075468	76075668	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64705.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	2.42	2.77	3.42	8.85	0.41	5.64	2.66	4.49	4.33	3.01	2.51	0.94
Merged-chrX-134580988-1	chrX	134580888	134581088	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 1 of 18)	intron (NM_013482, intron 1 of 18)	2152.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.5	0.0	0.0	5.32	4.7	0.66	2.72	2.16	1.51	1.51	0.31
Merged-chr5-108105696-1	chr5	108105596	108105796	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152817, intron 16 of 16)	intron (NR_152817, intron 16 of 16)	26924.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	6.86	7.55	16.54	4.02	2.86	5.02	3.99	5.66	9.24	6.03	7.54	5.01
Merged-chr3-121294406-1	chr3	121294306	121294506	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 1 of 2)	B2_Mm2|SINE|B2	2666.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	3.63	2.52	1.71	2.41	3.68	5.33	3.99	1.35	9.44	7.03	13.57	5.01
Merged-chr6-108664988-1	chr6	108664888	108665088	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011498, exon 5 of 5)	exon (NM_011498, exon 5 of 5)	-4054.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.63	4.02	5.7	6.03	2.05	5.64	4.65	1.12	1.18	5.02	1.0	2.51
Merged-chr1-55398097-1	chr1	55397997	55398197	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7849.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	1.62	3.52	3.42	2.01	6.55	0.94	6.98	4.68	1.77	1.0	3.01	2.82
Merged-chr17-31288843-1	chr17	31288743	31288943	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6640.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	2.83	8.3	1.14	6.44	6.55	4.39	1.33	5.19	5.9	4.52	4.52	4.7
Merged-chr4-132411847-1	chr4	132411747	132411947	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161797, intron 2 of 12)	intron (NM_001161797, intron 2 of 12)	10599.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	10.09	4.02	1.71	0.0	10.64	3.14	7.64	4.21	2.75	11.05	1.51	3.45
Merged-chr5-72950418-1	chr5	72950318	72950518	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153567, intron 3 of 8)	Lx8|LINE|L1	36056.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	4.04	1.01	3.99	8.45	6.55	6.27	4.32	3.64	0.59	1.51	6.03	2.19
Merged-chr11-55206042-1	chr11	55205942	55206142	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	L3|LINE|CR1	1702.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	7.67	6.54	6.28	3.62	2.45	4.7	4.98	6.98	4.13	6.03	4.52	4.07
Merged-chr4-123200849-1	chr4	123200749	123200949	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001085502)	promoter-TSS (NM_001085502)	-704.0	NM_001085502	230718.0	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	19.38	8.05	8.56	3.22	0.0	1.57	1.0	0.31	2.56	2.51	0.0	2.19
Merged-chr18-4344544-1	chr18	4344444	4344644	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	8409.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.63	3.02	1.14	1.21	6.95	5.96	0.33	0.25	1.18	3.01	1.0	2.51
Merged-chr6-136548569-1	chr6	136548469	136548669	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	29718.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.83	3.52	4.56	8.85	9.0	5.02	1.0	4.77	8.65	6.03	8.54	6.89
Merged-chr12-84317473-2	chr12	84317387	84317587	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252582, intron 1 of 7)	CpG	628.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	7.67	10.06	6.85	14.48	3.27	9.72	1.99	5.16	5.31	6.03	7.03	5.01
Merged-chr11-69982536-1	chr11	69982436	69982636	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026017, intron 1 of 7)	intron (NM_026017, intron 1 of 7)	-1301.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	3.23	1.51	3.99	2.01	0.82	3.76	1.99	3.22	2.95	7.53	1.0	5.64
Merged-chr11-83843685-1	chr11	83843585	83843785	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7184.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	3.63	3.52	3.99	3.22	6.55	3.76	1.99	6.17	5.11	6.53	0.5	3.13
Merged-chr4-115898092-1	chr4	115897992	115898192	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357060, exon 2 of 2)	exon (NM_001357060, exon 2 of 2)	7426.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	1.21	2.77	4.56	4.42	1.23	0.0	6.31	5.58	2.56	0.0	1.51	2.82
Merged-chr17-15632198-1	chr17	15632098	15632298	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045431, intron 1 of 3)	intron (NR_045431, intron 1 of 3)	410.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	2.02	2.01	5.7	2.82	3.68	2.51	4.98	4.32	5.31	1.51	5.02	1.88
Merged-chr1-147054752-1	chr1	147054652	147054852	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	557065.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.44	2.01	9.13	7.64	4.09	2.82	3.32	7.29	1.38	3.01	10.05	3.13
Merged-chr9-116172476-1	chr9	116172376	116172576	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	B4A|SINE|B4	2887.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.62	6.04	0.0	2.01	1.64	7.53	10.63	1.96	2.56	1.51	2.01	5.01
Merged-chr14-103962516-1	chr14	103962416	103962616	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64626.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	1.62	0.75	0.0	3.22	3.27	2.2	6.31	1.4	1.18	1.51	0.0	1.88
Merged-chr10-111131922-1	chr10	111131822	111132022	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32880.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.42	2.01	4.56	3.22	4.91	6.59	1.33	5.94	4.13	1.51	2.51	2.51
Merged-chr1-40354802-1	chr1	40354702	40354902	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	30213.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	5.25	0.25	1.14	3.62	2.86	4.08	3.99	5.1	4.13	2.01	1.51	1.25
Merged-chr11-49702240-1	chr11	49702140	49702340	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_212484, intron 2 of 11)	intron (NM_212484, intron 2 of 11)	414.0	NM_001290741	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	5.25	7.04	11.41	3.22	3.27	0.63	3.99	2.75	4.13	2.51	6.03	4.7
Merged-chr13-41932507-1	chr13	41932407	41932607	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66592.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	3.23	1.01	1.71	5.63	6.95	5.02	4.65	4.88	1.77	2.51	0.5	0.63
Merged-chr2-46444115-2	chr2	46444024	46444224	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	747519.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	7.27	5.03	2.85	1.61	5.32	5.33	1.66	6.48	8.65	9.04	2.51	9.71
Merged-chr8-128701176-1	chr8	128701076	128701276	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010578, intron 1 of 15)	Lx3_Mus|LINE|L1	15522.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.44	2.01	2.28	4.83	4.09	6.9	4.98	4.93	3.74	9.54	2.01	5.01
Merged-chr17-50975137-1	chr17	50975037	50975237	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 4 of 21)	L1_Mus4|LINE|L1	184241.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	1.21	2.52	0.57	4.02	7.36	3.76	6.64	4.74	4.13	2.51	2.01	1.57
Merged-chr1-105865124-1	chr1	105865024	105865224	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84401.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.23	5.03	3.42	4.02	4.91	7.84	7.64	4.09	6.29	13.56	5.02	2.82
Merged-chr5-64233489-1	chr5	64233389	64233589	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	3132.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.81	3.27	2.28	1.61	6.14	2.51	5.31	12.22	6.69	5.52	8.04	12.22
Merged-chr10-57448071-1	chr10	57447971	57448171	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38282.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	4.85	5.28	1.14	4.42	6.55	10.03	6.98	4.49	9.05	5.52	4.52	1.88
Merged-chr3-103744490-1	chr3	103744390	103744590	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_125731)	TTS (NR_125731)	-6489.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.85	8.05	12.55	6.84	4.91	7.53	2.99	2.5	5.51	3.51	3.01	3.45
Merged-chr18-56364441-1	chr18	56364341	56364541	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35899.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.02	1.01	6.85	2.41	8.18	10.03	1.99	6.28	6.29	4.52	12.06	2.19
Merged-chr5-134379048-1	chr5	134378948	134379148	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081462, intron 20 of 29)	B2_Mm1a|SINE|B2	52594.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	5.25	6.79	14.83	5.23	2.86	0.94	4.65	3.98	7.28	1.51	2.01	9.4
Merged-chr17-88439789-1	chr17	88439689	88439889	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-915.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.25	2.01	0.0	1.61	6.95	1.88	1.66	5.41	5.31	12.05	5.02	3.45
Merged-chr6-47799262-1	chr6	47799162	47799362	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009787, exon 8 of 10)	exon (NM_009787, exon 8 of 10)	4390.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	7.27	4.28	5.13	2.41	0.82	7.21	1.99	4.54	5.51	4.52	8.54	6.27
Merged-chr12-51704812-1	chr12	51704712	51704912	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12898.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.4	3.02	3.99	6.03	5.73	3.14	4.65	3.64	2.56	3.01	2.01	2.82
Merged-chr9-65124021-1	chr9	65123921	65124121	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020043, exon 7 of 20)	exon (NM_020043, exon 7 of 20)	-17133.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	7.67	3.02	2.85	4.02	0.82	5.33	1.99	4.21	0.98	3.51	5.53	2.82
Merged-chr15-51990621-1	chr15	51990521	51990721	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	1139.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	2.02	3.27	0.0	0.4	8.18	4.39	7.31	5.5	3.74	3.51	2.01	5.95
Merged-chr13-5850435-1	chr13	5850335	5850535	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7657.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	2.26	1.14	1.61	3.68	8.78	0.66	4.04	3.34	2.51	2.51	4.7
Merged-chr5-105800081-1	chr5	105799981	105800181	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-76487.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	2.42	4.02	4.56	2.41	1.64	5.33	0.66	3.48	2.36	1.0	3.52	0.0
Merged-chr18-34163206-1	chr18	34163106	34163306	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57778.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	2.02	4.53	0.0	4.83	2.86	3.45	3.99	5.86	8.85	3.01	7.03	1.88
Merged-chr7-25652562-1	chr7	25652462	25652662	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	6199.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	4.85	2.52	7.42	3.62	4.09	5.02	3.65	6.2	5.7	3.01	3.01	4.7
Merged-chr16-76365360-1	chr16	76365260	76365460	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	7689.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.65	7.04	5.7	2.41	0.82	0.94	1.33	1.71	2.75	4.02	1.0	2.82
Merged-chr10-3741175-2	chr10	3741093	3741293	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	816.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	2.02	4.02	1.14	1.61	5.32	2.82	0.0	3.28	9.05	14.56	12.06	6.58
Merged-chr8-46628082-1	chr8	46627982	46628182	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10791.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.4	3.27	0.0	2.01	3.68	5.64	1.66	3.84	3.15	3.01	2.51	0.63
Merged-chr1-193273140-1	chr1	193273040	193273240	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008059)	promoter-TSS (NM_008059)	48.0	NM_008059	14373.0	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	1.62	1.01	0.57	0.8	3.68	5.96	7.31	5.75	6.29	5.02	5.53	3.45
Merged-chr2-101810775-1	chr2	101810675	101810875	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-13068.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.21	4.53	7.42	7.64	2.45	2.2	3.65	6.17	7.87	8.03	8.04	1.88
Merged-chr7-80159020-1	chr7	80158920	80159120	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27821.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	10.09	5.28	5.7	6.44	8.18	7.84	2.33	3.31	13.37	8.54	9.04	0.94
Merged-chr11-49248852-1	chr11	49248752	49248952	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	1375.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	3.23	1.01	0.0	2.41	0.41	8.78	4.98	5.05	1.77	0.0	0.0	1.57
Merged-chr14-57684810-1	chr14	57684710	57684910	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19854.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	4.04	3.27	13.69	1.61	8.18	5.33	3.99	5.58	9.64	5.52	9.55	5.64
Merged-chr15-98978067-1	chr15	98977967	98978167	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7898.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.81	3.77	9.13	0.8	9.41	5.96	3.32	2.97	1.97	2.51	1.0	3.45
Merged-chr15-74679320-1	chr15	74679220	74679420	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6750.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	6.46	2.26	0.0	4.02	7.36	6.59	4.98	3.9	3.93	5.02	11.56	2.82
Merged-chr9-57071322-1	chr9	57071222	57071422	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110351)	promoter-TSS (NM_001110351)	644.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	3.63	2.77	1.14	0.4	2.05	5.64	1.33	3.9	2.75	5.02	3.01	2.51
Merged-chr18-79288961-1	chr18	79288861	79289061	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-179570.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	1.21	2.52	1.14	3.22	1.64	3.14	7.31	4.15	0.0	1.0	0.0	0.0
Merged-chr7-45452363-1	chr7	45452263	45452463	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030678, intron 14 of 15)	B3|SINE|B2	7523.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	5.25	6.54	7.42	3.22	3.27	5.33	2.33	3.84	7.28	7.03	1.51	3.45
Merged-chr1-57436530-1	chr1	57436430	57436630	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29856.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.23	1.51	1.14	1.61	5.73	5.33	2.33	5.64	1.97	2.01	8.54	0.94
Merged-chr15-6056964-1	chr15	6056864	6057064	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12260.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.81	0.25	2.28	0.0	0.82	3.76	4.65	2.94	3.74	0.5	4.02	3.13
Merged-chr5-31821351-1	chr5	31821251	31821451	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 5 of 11)	intron (NM_144541, intron 5 of 11)	123301.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.63	0.0	5.7	0.8	6.55	2.2	4.98	4.49	6.88	2.01	5.02	3.45
Merged-chr6-125527884-1	chr6	125527784	125527984	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25064.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.81	2.52	2.28	0.8	3.68	0.63	2.99	1.32	15.74	9.54	5.53	5.64
Merged-chr13-35512198-1	chr13	35512098	35512298	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-147664.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.85	11.82	2.28	8.85	2.45	0.31	1.99	2.13	4.33	3.51	5.53	3.13
Merged-chr7-19507221-1	chr7	19507121	19507321	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	1110.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	8.88	7.8	5.7	1.61	12.27	8.15	3.99	2.8	11.01	8.54	3.01	7.83
Merged-chr3-106498352-1	chr3	106498252	106498452	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	12312.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.0	1.01	6.85	0.4	7.77	1.57	1.66	3.93	8.46	3.01	10.05	2.19
Merged-chr1-10266992-1	chr1	10266892	10267092	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-34322.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	4.04	7.04	10.27	4.42	5.73	3.76	1.33	5.19	3.15	2.51	7.03	5.33
Merged-chr1-178391548-1	chr1	178391448	178391648	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14470.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	1.62	1.76	6.28	2.41	6.95	4.39	2.33	3.64	7.28	18.58	7.54	3.13
Merged-chr6-122343915-1	chr6	122343815	122344015	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3688.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	6.06	6.29	3.99	5.23	2.45	5.64	5.31	6.62	10.82	3.01	5.53	6.27
Merged-chr6-87723791-1	chr6	87723691	87723891	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-7078.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.04	5.53	4.56	8.04	3.27	6.9	4.32	3.31	4.72	1.51	6.03	3.45
Merged-chr9-66646434-1	chr9	66646334	66646534	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53319.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	4.44	5.53	1.14	4.83	6.95	11.92	0.66	3.62	10.03	6.03	10.05	3.45
Merged-chr16-37533567-1	chr16	37533467	37533667	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355727, intron 2 of 4)	intron (NM_001355727, intron 2 of 4)	6222.0	NM_028812	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	2.42	2.52	3.99	1.21	3.27	7.21	3.99	3.79	5.51	3.01	8.04	2.51
Merged-chr13-112999057-1	chr13	112998957	112999157	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037914, exon 7 of 7)	exon (NM_001037914, exon 7 of 7)	5189.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	6.46	10.56	5.7	6.84	6.55	11.29	3.99	3.7	7.28	5.52	5.02	5.64
Merged-chr9-45911812-1	chr9	45911712	45911912	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104055, intron 5 of 17)	intron (NR_104055, intron 5 of 17)	-4901.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	4.04	2.77	1.71	0.8	2.45	4.39	2.33	2.52	7.08	5.02	8.04	3.45
Merged-chr2-137571081-1	chr2	137570981	137571181	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-454561.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.83	3.02	4.56	7.24	9.41	3.76	3.65	13.35	1.97	0.5	5.02	4.39
Merged-chr15-99083475-1	chr15	99083375	99083575	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030159)	TTS (NM_030159)	2670.0	NR_105925	102465579.0		NR_105925	ENSMUSG00000098698	Mir6960	Gm27620|mmu-mir-6960	microRNA 6960	ncRNA	4.85	3.77	5.13	6.84	2.45	4.39	1.66	6.22	8.06	8.54	8.54	4.07
Merged-chr17-55957354-1	chr17	55957254	55957454	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_015766)	TTS (NM_015766)	-1833.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	2.83	9.56	4.56	3.22	6.55	8.15	7.31	3.87	7.08	11.55	8.54	5.33
Merged-chrX-7313744-2	chrX	7313651	7313851	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	5607.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	8.88	6.04	11.41	2.41	1.64	7.21	5.31	4.49	4.33	9.04	1.51	10.02
Merged-chr7-99440380-1	chr7	99440280	99440480	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201352, intron 5 of 17)	intron (NM_201352, intron 5 of 17)	-25624.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	4.85	4.02	3.99	4.42	2.45	5.96	3.99	3.59	1.18	4.52	2.51	1.25
Merged-chr2-151941430-1	chr2	151941330	151941530	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009641, intron 7 of 8)	intron (NM_009641, intron 7 of 8)	26187.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	7.27	3.02	2.85	3.62	6.55	0.0	1.0	3.87	3.15	6.03	2.01	5.01
Merged-chr1-180434315-3	chr1	180434194	180434394	+	582.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	49210.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	6.46	8.55	4.56	8.85	5.32	4.08	3.99	4.04	6.29	9.04	9.55	8.77
Merged-chr13-5866857-3	chr13	5866777	5866977	+	582.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 3 of 3)	intron (NM_011803, intron 3 of 3)	5388.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.23	6.04	10.27	1.21	6.55	8.78	0.66	3.14	7.87	4.02	4.52	5.01
Merged-chr5-146904607-2	chr5	146904509	146904709	+	582.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44048.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.04	3.02	4.56	6.44	5.73	2.2	1.99	6.84	7.08	10.54	8.54	5.64
Merged-chr3-107094234-2	chr3	107094135	107094335	+	582.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7332.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	1.62	6.54	1.14	7.64	6.14	6.9	3.99	3.64	10.42	6.53	5.53	5.33
Merged-chr11-64459427-1	chr11	64459327	64459527	+	582.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-22753.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.42	6.04	1.14	6.84	0.0	0.63	0.66	2.72	7.87	8.54	10.05	5.64
Merged-chr2-144198861-1	chr2	144198761	144198961	+	582.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9571.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	8.48	3.27	9.7	8.85	8.18	3.14	1.66	4.82	5.31	4.02	7.54	4.7
Merged-chr2-34755069-2	chr2	34754973	34755173	+	582.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151469, exon 1 of 27)	non-coding (NR_151469, exon 1 of 27)	159.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.44	4.78	3.99	3.22	7.77	7.84	2.66	4.71	6.49	14.06	7.54	9.4
Merged-chr11-98355939-2	chr11	98355832	98356032	+	582.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313970, intron 5 of 6)	intron (NM_001313970, intron 5 of 6)	2351.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	11.31	6.29	2.28	3.22	6.95	5.64	3.65	3.73	7.67	4.02	5.02	4.39
Merged-chr13-23570373-1	chr13	23570273	23570473	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178187)	TTS (NM_178187)	847.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	8.08	3.77	2.28	7.64	5.32	4.08	4.98	4.15	4.13	4.52	8.54	4.7
Merged-chr5-89860438-2	chr5	89860343	89860543	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	22891.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.81	4.53	9.13	1.21	0.41	3.76	3.99	5.55	7.28	4.02	7.03	6.27
Merged-chr10-79850156-1	chr10	79850056	79850256	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	L1MB8|LINE|L1	-4276.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	4.85	5.79	2.28	2.82	12.27	7.84	8.97	3.73	5.9	6.53	5.53	7.83
Merged-chr7-123367871-2	chr7	123367797	123367997	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	2018.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.44	4.02	2.28	2.82	6.55	3.45	2.99	3.95	7.28	9.54	8.54	6.89
Merged-chr12-55459062-1	chr12	55458962	55459162	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33585.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.85	4.28	1.71	0.8	7.77	5.96	3.99	5.61	5.51	12.05	5.02	1.88
Merged-chr11-17154207-1	chr11	17154107	17154307	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5091.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.85	2.26	3.42	1.21	3.27	3.45	5.65	4.26	6.69	2.51	11.56	3.13
Merged-chr2-109231478-1	chr2	109231378	109231578	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	46812.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.81	0.5	2.28	0.8	5.32	5.64	3.32	6.25	6.49	0.0	8.04	3.13
Merged-chr11-109585233-2	chr11	109585135	109585335	+	582.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145940, intron 4 of 12)	intron (NM_145940, intron 4 of 12)	26154.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	6.46	6.54	6.85	8.04	4.09	5.02	4.65	4.01	8.65	0.5	7.54	3.76
Merged-chr6-51123203-1	chr6	51123103	51123303	+	582.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146707.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	3.02	1.14	4.02	2.45	5.96	1.33	2.16	5.7	4.52	10.55	9.71
Merged-chr3-93494209-1	chr3	93494109	93494309	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25455.0	NM_027762	71325.0	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	4.85	3.02	7.42	3.22	5.73	5.64	1.66	5.36	2.75	4.02	4.52	5.95
Merged-chr9-39629297-1	chr9	39629197	39629397	+	582.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6172.0	NM_146279	258276.0	Mm.390137	NM_146279	ENSMUSG00000059867	Olfr960	MOR224-12	olfactory receptor 960	protein-coding	2.02	1.01	0.0	0.0	0.41	0.63	1.33	1.91	10.82	10.04	6.03	7.21
Merged-chr10-81358366-2	chr10	81358259	81358459	+	582.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	868.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	9.29	6.54	6.85	2.41	7.36	8.78	8.3	3.48	9.05	5.02	10.55	5.64
Merged-chr11-102320281-2	chr11	102320128	102320328	+	582.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1132.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	6.06	2.52	2.85	3.62	6.14	5.02	4.98	5.19	6.1	4.02	1.51	3.13
Merged-chr6-90490150-1	chr6	90490050	90490250	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27574.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	3.63	6.29	1.14	5.63	7.36	3.45	5.65	4.51	3.93	2.51	5.02	5.01
Merged-chr7-19888015-1	chr7	19887915	19888115	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177036)	promoter-TSS (NM_177036)	-50.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	4.04	1.76	5.7	2.82	4.5	5.96	5.31	5.86	4.72	3.51	9.04	6.58
Merged-chr15-9075003-1	chr15	9074903	9075103	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	3743.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	5.65	6.79	2.28	8.85	2.45	9.41	5.65	3.59	8.26	6.53	2.01	0.63
Merged-chr11-5102521-1	chr11	5102421	5102621	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177370, intron 4 of 8)	intron (NM_177370, intron 4 of 8)	2356.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.63	3.27	5.7	0.8	11.05	7.84	4.65	4.88	1.77	3.51	3.52	1.25
Merged-chr4-19580739-1	chr4	19580639	19580839	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025476, intron 2 of 9)	B4A|SINE|B4	5673.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	3.23	2.77	1.71	7.24	4.5	3.45	2.66	4.01	2.75	1.51	3.52	3.45
Merged-chr6-34869009-2	chr6	34868893	34869093	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	PB1D11|SINE|Alu	5847.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	3.63	7.55	1.71	1.21	0.82	7.21	3.32	3.22	8.06	8.03	1.0	2.82
Merged-chr11-102267604-2	chr11	102267487	102267687	+	582.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1236.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	4.04	6.79	5.13	7.64	10.23	7.84	2.99	4.65	10.82	7.53	5.53	6.89
Merged-chr19-5106067-1	chr19	5105967	5106167	+	582.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029576, intron 1 of 5)	intron (NM_029576, intron 1 of 5)	929.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	5.65	4.02	2.28	4.83	5.32	8.15	3.32	4.15	5.7	2.51	7.54	4.39
Merged-chr11-94970350-1	chr11	94970250	94970450	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009161, intron 7 of 10)	intron (NM_009161, intron 7 of 10)	2757.0	NM_018792	54388.0	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	6.86	13.33	6.28	6.03	5.32	2.82	6.98	1.12	4.13	5.02	2.01	3.76
Merged-chr3-108289144-1	chr3	108289044	108289244	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	5080.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	8.08	2.52	11.41	8.45	4.91	2.82	2.66	6.28	1.77	0.5	2.01	3.45
Merged-chr9-47628302-1	chr9	47628202	47628402	+	582.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	97950.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.81	1.76	0.57	0.0	1.23	0.0	0.66	0.03	9.24	13.56	6.03	8.77
Merged-chr6-117828445-1	chr6	117828345	117828545	+	582.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12736.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	6.86	2.26	0.57	2.82	7.77	5.02	6.64	5.41	5.11	6.53	2.01	3.45
Merged-chr4-100998333-3	chr4	100998237	100998437	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198037, intron 26 of 26)	intron (NM_198037, intron 26 of 26)	-70701.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	10.5	7.04	10.84	4.83	5.73	12.23	6.31	3.93	8.26	12.05	6.53	6.27
Merged-chr9-40821513-1	chr9	40821413	40821613	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20240.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.27	3.27	5.7	8.04	1.64	7.21	0.0	0.87	3.54	2.01	3.52	0.63
Merged-chr13-22042505-2	chr13	22042393	22042593	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	456.0	NM_178186	319167.0	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	6.06	10.06	5.7	3.22	6.55	6.27	4.98	3.98	10.62	3.01	6.03	13.16
Merged-chr2-19528973-2	chr2	19528880	19529080	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027600, intron 4 of 16)	intron (NM_027600, intron 4 of 16)	24930.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	11.31	2.77	2.85	6.44	4.91	6.27	1.33	5.07	9.44	14.56	9.55	2.82
Merged-chr8-26687798-2	chr8	26687706	26687906	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136617.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.85	3.27	2.85	3.62	11.45	4.7	4.98	4.96	9.44	8.54	5.02	7.52
Merged-chr3-95228246-2	chr3	95228127	95228327	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172395)	promoter-TSS (NM_172395)	-197.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	13.73	2.01	1.14	4.42	4.5	3.45	6.31	9.08	8.06	9.04	5.02	7.83
Merged-chr5-147052125-1	chr5	147052025	147052225	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	24447.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.0	0.5	2.85	2.01	5.73	0.63	2.66	1.37	1.97	1.51	0.0	0.63
Merged-chr9-43096488-1	chr9	43096388	43096588	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	9230.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	6.46	4.53	11.41	5.23	3.68	3.14	5.98	4.82	8.46	3.01	5.53	5.01
Merged-chr6-119481079-1	chr6	119480979	119481179	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1411.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.63	6.79	5.7	6.03	8.18	7.84	1.33	2.55	5.31	5.52	4.52	5.64
Merged-chr15-96539120-1	chr15	96539020	96539220	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78277.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.81	2.77	1.71	0.8	0.0	3.76	2.66	1.49	9.64	0.5	10.05	1.88
Merged-chr4-141454709-1	chr4	141454609	141454809	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009541, intron 2 of 15)	intron (NM_009541, intron 2 of 15)	10036.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	2.42	2.26	2.28	3.22	8.18	5.96	2.99	2.02	8.26	11.05	4.52	9.08
Merged-chr10-14082546-2	chr10	14082442	14082642	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	LTR88b|LTR|Gypsy?	116163.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.46	7.04	3.42	5.23	3.27	6.59	4.32	5.1	8.46	6.03	4.52	6.27
Merged-chr2-120661084-1	chr2	120660984	120661184	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51489.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	1.62	0.5	3.42	0.8	4.5	6.27	1.0	6.56	13.57	9.04	2.01	5.64
Merged-chr9-22388045-1	chr9	22387945	22388145	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	1161.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	2.02	2.52	3.99	2.82	2.86	5.64	1.33	4.88	8.06	5.52	5.02	3.13
Merged-chr12-32911006-1	chr12	32910906	32911106	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	42783.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	6.86	7.04	18.25	2.41	3.68	4.7	3.32	6.31	9.64	8.54	12.06	7.83
Merged-chr17-45748642-1	chr17	45748542	45748742	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	14136.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.23	2.77	3.42	1.21	3.27	4.08	1.33	2.83	12.0	8.54	6.53	5.64
Merged-chr12-112594343-1	chr12	112594243	112594443	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5559.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	10.09	7.55	8.56	15.28	10.64	14.42	4.32	5.8	14.75	9.54	14.07	10.34
Merged-chr7-98962722-1	chr7	98962622	98962822	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	MER20|DNA|hAT-Charlie	123877.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.21	5.03	3.42	3.22	3.68	3.45	4.32	4.71	7.08	6.03	4.52	6.58
Merged-chr2-126397690-1	chr2	126397590	126397790	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001080944, exon 13 of 28)	exon (NM_001080944, exon 13 of 28)	93863.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	10.5	6.04	7.99	12.07	5.73	4.39	2.99	10.01	5.7	4.52	7.54	2.19
Merged-chr10-80901793-1	chr10	80901693	80901893	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-824.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	3.23	3.02	3.42	1.61	0.82	0.63	0.66	2.64	6.69	1.0	2.01	5.01
Merged-chr12-72442107-1	chr12	72442007	72442207	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142729)	promoter-TSS (NM_001142729)	-142.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.0	0.25	0.0	0.4	0.41	3.45	1.66	2.86	0.98	6.03	0.5	2.51
Merged-chr12-102162998-1	chr12	102162898	102163098	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	34271.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	1.62	1.51	5.7	2.41	5.73	10.03	2.66	4.23	2.75	3.01	2.01	1.57
Merged-chr10-94381833-1	chr10	94381733	94381933	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69884.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.83	5.28	7.99	5.63	4.09	5.64	4.32	7.18	10.82	8.54	10.05	1.57
Merged-chr1-63659874-1	chr1	63659774	63659974	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081658, intron 9 of 14)	intron (NM_001081658, intron 9 of 14)	27053.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	4.44	4.53	3.42	3.62	1.64	2.2	9.3	4.88	2.56	0.0	4.02	3.76
Merged-chr4-12483206-1	chr4	12483106	12483306	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-311191.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	8.08	8.3	6.85	8.04	5.73	9.41	5.65	2.64	12.59	7.53	4.02	5.01
Merged-chr11-87523699-1	chr11	87523599	87523799	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199293, intron 18 of 30)	intron (NM_001199293, intron 18 of 30)	-54690.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	12.11	2.52	5.7	1.61	11.45	4.08	2.66	5.58	4.72	3.01	5.02	7.21
Merged-chr17-29474214-2	chr17	29474104	29474304	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16841.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.25	6.54	10.27	3.22	2.45	4.08	4.98	3.06	8.65	2.01	9.55	5.01
Merged-chr14-69824920-1	chr14	69824820	69825020	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	-15487.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	5.65	6.54	11.41	4.83	6.55	2.51	3.65	4.91	5.9	6.53	10.05	2.51
Merged-chr16-89906016-1	chr16	89905916	89906116	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 3 of 27)	B3|SINE|B2	54811.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	6.06	6.54	7.42	1.21	1.64	11.6	1.66	4.32	3.15	1.0	1.0	2.82
Merged-chr17-47244386-1	chr17	47244286	47244486	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	ID_B1|SINE|B4	14156.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	1.62	4.53	2.85	2.01	5.73	1.57	5.98	5.3	1.57	8.54	4.02	0.63
Merged-chr3-84015808-1	chr3	84015708	84015908	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	24353.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	5.25	2.52	1.14	2.41	6.55	0.0	3.32	5.02	2.36	1.51	5.02	0.31
Merged-chr10-103028652-1	chr10	103028552	103028752	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172553, exon 1 of 4)	5' UTR (NM_172553, exon 1 of 4)	125.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.0	0.0	7.42	0.0	0.41	3.45	4.65	4.57	1.77	1.0	1.51	2.19
Merged-chr15-63923239-1	chr15	63923139	63923339	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029414, intron 8 of 10)	intron (NR_029414, intron 8 of 10)	8778.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	3.63	3.27	1.14	5.23	2.05	5.02	7.31	4.26	2.36	9.54	8.04	1.25
Merged-chr5-64327394-1	chr5	64327294	64327494	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	97037.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.62	3.27	5.13	0.8	1.23	2.51	5.31	3.79	1.38	10.54	4.02	0.94
Merged-chr4-151920510-1	chr4	151920410	151920610	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13210.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	2.02	0.0	0.0	4.02	5.32	5.64	2.33	3.31	4.92	3.01	2.01	5.01
Merged-chr14-16219249-1	chr14	16219149	16219349	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	24082.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.81	4.28	2.85	4.02	3.68	5.96	3.99	4.82	7.87	6.03	6.53	1.57
Merged-chr3-87411379-1	chr3	87411279	87411479	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24403.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.0	1.26	0.0	0.0	0.0	1.25	2.33	1.49	11.01	5.52	10.55	1.88
Merged-chr9-111497271-1	chr9	111497171	111497371	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58190.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	4.85	2.01	4.56	3.62	0.82	4.39	4.32	4.4	6.88	8.03	4.02	1.88
Merged-chr4-59850373-1	chr4	59850273	59850473	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	44723.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.44	6.54	7.99	4.83	5.32	8.47	8.3	6.62	7.87	4.52	8.04	1.25
Merged-chr1-82724406-1	chr1	82724306	82724506	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	-484.0	NM_001310697	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	10.9	2.52	5.7	7.24	4.91	7.53	4.65	6.31	4.33	6.53	5.53	5.64
Merged-chr2-5469360-1	chr2	5469260	5469460	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	89970.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	3.63	1.76	3.42	2.41	6.95	8.47	4.32	3.93	4.13	6.53	3.01	2.82
Merged-chr15-79339202-1	chr15	79339102	79339302	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7419.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.46	2.77	6.28	2.41	6.55	7.84	2.66	1.91	9.24	14.56	7.54	7.21
Merged-chr16-37579245-1	chr16	37579145	37579345	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-908.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	1.62	2.26	0.0	0.8	2.86	0.63	0.33	3.73	2.56	4.52	2.51	1.57
Merged-chr5-9012874-1	chr5	9012774	9012974	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-15728.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	5.65	2.01	3.42	4.42	2.45	4.08	4.32	4.57	5.31	6.03	3.01	3.45
Merged-chr12-24741766-1	chr12	24741666	24741866	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	33512.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	12.11	4.02	4.56	8.04	9.82	9.41	4.32	4.07	2.75	2.01	4.02	2.51
Merged-chr3-10260018-1	chr3	10259918	10260118	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-5766.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	4.02	2.85	3.22	3.27	1.88	4.32	3.95	0.98	1.51	0.0	0.94
Merged-chr4-149586409-1	chr4	149586309	149586509	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290989)	promoter-TSS (NM_001290989)	-59.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	8.08	8.55	6.85	1.21	5.73	5.64	4.32	3.28	6.69	7.53	8.04	2.82
Merged-chr9-55589240-1	chr9	55589140	55589340	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357652, intron 28 of 32)	intron (NM_001357652, intron 28 of 32)	-32460.0	NM_001357653	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	1.62	0.5	0.0	3.22	4.09	5.64	3.99	5.61	0.0	5.02	2.51	2.51
Merged-chr8-41371009-1	chr8	41370909	41371109	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	3688.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	1.62	3.52	3.99	1.61	1.64	4.7	3.32	8.78	4.92	5.02	9.55	2.82
Merged-chr1-184730846-2	chr1	184730743	184730943	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008250, exon 2 of 4)	exon (NM_008250, exon 2 of 4)	1650.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	1.21	3.52	5.7	2.01	7.77	6.59	7.97	2.97	10.62	22.09	3.01	6.58
Merged-chr2-25626609-1	chr2	25626509	25626709	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007995, intron 5 of 9)	intron (NM_007995, intron 5 of 9)	1365.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	2.42	0.5	0.57	1.61	0.0	1.25	6.31	3.34	1.57	4.02	0.5	4.7
Merged-chr19-21644129-1	chr19	21644029	21644229	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	8662.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	3.63	5.28	10.84	3.62	5.73	2.51	2.66	6.31	4.52	5.52	3.52	14.41
Merged-chr14-65026375-1	chr14	65026275	65026475	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153414, intron 10 of 16)	intron (NM_153414, intron 10 of 16)	71731.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	2.83	3.52	3.99	0.8	4.91	2.51	0.66	5.07	5.11	4.52	3.01	4.07
Merged-chr3-51184330-1	chr3	51184230	51184430	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-40117.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.25	0.0	0.0	0.0	0.0	0.0	0.53	6.29	9.04	8.04	6.27
Merged-chr8-11094712-1	chr8	11094612	11094812	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86282.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	5.23	2.86	0.94	6.64	4.09	0.79	3.01	1.51	2.51
Merged-chr11-78983560-1	chr11	78983460	78983660	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1364.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	1.21	3.02	2.28	3.62	3.27	5.64	1.33	0.48	7.28	5.02	9.55	2.82
Merged-chr13-37779955-1	chr13	37779855	37780055	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46083.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.67	2.01	4.56	2.01	7.77	7.21	8.3	4.54	8.65	6.03	5.53	8.46
Merged-chr11-114205362-1	chr11	114205262	114205462	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7104.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	1.21	0.0	0.0	4.83	1.64	2.51	0.33	3.17	7.67	3.51	8.04	9.71
Merged-chr5-19401210-1	chr5	19401110	19401310	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	174164.0	NM_001170746	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	1.21	4.53	0.0	2.41	1.64	5.02	1.33	4.68	8.06	10.04	3.01	2.19
Merged-chr2-6674580-2	chr2	6674481	6674681	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	47081.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.25	3.02	3.99	2.82	6.55	6.27	4.98	5.38	9.24	9.54	11.56	5.64
Merged-chr2-27539882-1	chr2	27539782	27539982	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24735.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.85	2.26	2.28	2.82	4.09	9.72	5.98	2.97	8.46	6.53	12.56	9.71
Merged-chr9-48580946-1	chr9	48580846	48581046	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	24177.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	6.86	2.52	5.7	1.61	0.82	7.84	1.99	2.38	1.77	5.02	11.05	5.33
Merged-chr15-66685317-1	chr15	66685217	66685417	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009375, exon 11 of 48)	exon (NM_009375, exon 11 of 48)	14547.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	3.63	0.25	2.28	5.23	4.09	0.0	0.33	1.63	10.03	4.52	10.05	0.94
Merged-chr1-74390147-1	chr1	74390047	74390247	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1462.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.23	3.02	1.14	1.61	8.18	5.64	6.64	4.32	6.1	3.01	14.57	1.25
Merged-chr16-55525669-1	chr16	55525569	55525769	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30938.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.81	4.53	0.0	2.41	4.09	5.02	1.33	7.04	2.36	4.02	0.0	2.51
Merged-chr11-106723043-2	chr11	106722932	106723132	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7751.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	1.62	1.01	2.85	2.41	6.95	5.02	0.66	4.77	5.31	8.03	6.03	9.71
Merged-chr13-74022330-1	chr13	74022230	74022430	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	12911.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	2.83	2.01	10.27	8.04	4.5	0.63	2.66	5.83	3.74	2.01	1.51	5.33
Merged-chr6-142343851-1	chr6	142343751	142343951	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1846.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	6.46	4.78	6.85	4.83	6.95	5.64	3.32	6.7	6.49	8.03	1.0	5.01
Merged-chr13-21160229-1	chr13	21160129	21160329	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17174.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	7.27	3.77	3.99	0.4	4.09	5.02	6.31	2.83	4.13	4.52	4.02	5.95
Merged-chr2-180702593-1	chr2	180702493	180702693	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-491.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	2.83	8.05	9.7	3.22	5.32	5.64	1.33	2.36	5.51	3.01	0.0	7.21
Merged-chr19-57198130-1	chr19	57198030	57198230	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	-499.0	NM_001290816	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.81	3.52	6.85	9.25	3.68	3.45	6.64	5.36	1.97	1.0	1.51	1.25
Merged-chr7-31208928-1	chr7	31208828	31209028	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	46570.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	7.67	7.8	5.7	5.23	4.5	8.15	1.66	1.85	3.54	2.01	2.01	4.39
Merged-chr12-54927632-1	chr12	54927532	54927732	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013815, exon 12 of 27)	exon (NM_013815, exon 12 of 27)	58704.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	1.76	2.28	9.25	4.09	3.45	5.98	6.98	2.75	0.0	8.04	3.76
Merged-chr2-170174671-1	chr2	170174571	170174771	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31996.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	8.08	4.28	5.7	2.01	2.45	5.33	3.99	4.23	3.15	4.52	6.03	5.01
Merged-chr9-59540696-1	chr9	59540596	59540796	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	1156.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	1.21	2.01	7.99	4.02	1.64	1.25	2.33	2.64	6.88	6.03	2.51	5.95
Merged-chr17-40794123-1	chr17	40794023	40794223	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009420)	promoter-TSS (NM_009420)	23.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	4.44	1.51	1.14	4.83	10.64	1.25	1.66	4.85	8.85	3.51	6.53	1.88
Merged-chr5-146303659-1	chr5	146303559	146303759	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001359990)	TTS (NM_001359990)	72409.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	7.67	3.02	10.84	2.41	0.82	10.98	4.32	4.88	5.31	5.02	16.08	3.45
Merged-chr7-44304073-1	chr7	44303973	44304173	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009131, exon 4 of 4)	3' UTR (NM_009131, exon 4 of 4)	2886.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	2.02	5.79	7.99	5.63	2.45	0.31	3.32	0.76	7.28	14.56	4.52	2.82
Merged-chr17-9764921-1	chr17	9764821	9765021	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045433, intron 3 of 3)	intron (NR_045433, intron 3 of 3)	10945.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	1.21	1.01	0.57	2.41	1.64	2.51	3.99	4.21	0.79	0.5	3.01	2.51
Merged-chr5-103802706-1	chr5	103802606	103802806	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133919, intron 3 of 19)	intron (NM_133919, intron 3 of 19)	48133.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.25	5.53	9.7	5.23	3.68	5.96	2.33	9.87	8.65	7.03	7.03	2.19
Merged-chr2-77285120-1	chr2	77285020	77285220	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-4528.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.83	2.77	0.0	1.21	6.55	5.64	3.32	4.6	6.49	4.02	10.05	4.39
Merged-chr13-110567713-1	chr13	110567613	110567813	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172669.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.81	3.52	1.14	5.63	0.82	0.31	2.66	3.11	5.51	2.51	3.52	3.45
Merged-chr3-88331441-1	chr3	88331341	88331541	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024246, intron 3 of 3)	intron (NM_024246, intron 3 of 3)	2992.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	5.25	7.55	5.7	3.22	6.95	6.27	3.65	4.4	10.82	5.52	9.04	9.71
Merged-chrX-159628216-1	chrX	159628116	159628316	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	944.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.85	2.52	5.13	6.84	3.27	8.47	8.3	5.89	6.1	5.02	8.04	5.95
Merged-chr7-64358102-1	chr7	64358002	64358202	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	15993.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	7.67	2.52	0.0	10.86	3.27	2.51	3.32	12.14	1.77	8.03	7.03	6.58
Merged-chr5-28094120-1	chr5	28094020	28094220	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22708.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	5.65	7.04	4.56	6.44	3.27	3.76	5.98	3.56	9.83	8.03	9.55	5.95
Merged-chr18-60211326-1	chr18	60211226	60211426	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-751.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	2.83	3.27	1.71	3.22	1.64	0.63	0.0	3.39	8.06	6.03	3.01	7.83
Merged-chr11-98031576-1	chr11	98031476	98031676	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4652.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	2.02	7.29	3.42	2.82	5.32	5.33	3.32	5.52	4.52	6.53	3.52	4.07
Merged-chr15-39078648-1	chr15	39078548	39078748	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026778, intron 1 of 3)	intron (NM_026778, intron 1 of 3)	1716.0	NM_026778	68588.0	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	7.27	3.77	6.28	6.03	7.36	0.63	2.99	5.38	6.69	4.52	1.0	6.27
Merged-chr18-62033639-1	chr18	62033539	62033739	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80564.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.85	6.04	4.56	11.66	8.18	7.84	2.33	3.67	1.38	0.0	1.51	2.82
Merged-chr6-124507582-2	chr6	124507485	124507685	+	581.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181344, intron 5 of 5)	L1MB7|LINE|L1	-5036.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	2.42	7.55	10.27	8.85	9.0	11.6	6.64	1.6	8.06	8.03	6.03	7.21
Merged-chr5-140540296-2	chr5	140540196	140540396	+	581.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24771.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	6.46	3.02	3.99	1.61	6.95	7.84	2.33	5.58	8.65	12.55	11.56	5.64
Merged-chr9-108068070-2	chr9	108067967	108068167	+	581.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311152, intron 15 of 38)	intron (NM_001311152, intron 15 of 38)	11234.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	5.65	8.8	3.42	6.03	8.18	8.15	4.32	6.36	8.65	6.03	7.03	5.64
Merged-chr16-91741072-1	chr16	91740972	91741172	+	581.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11701.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.23	2.52	9.7	4.42	13.5	4.7	3.99	5.21	7.47	3.01	6.53	5.95
Merged-chr9-46192834-3	chr9	46192739	46192939	+	581.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-35791.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	8.88	5.28	10.84	9.25	5.73	10.98	3.65	5.66	16.13	8.03	10.05	5.95
Merged-chr2-75936806-1	chr2	75936706	75936906	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028235, exon 1 of 1)	exon (NM_028235, exon 1 of 1)	1656.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	7.27	6.04	5.7	7.64	7.36	13.17	6.31	5.38	8.26	12.05	4.52	5.01
Merged-chr18-39185860-1	chr18	39185760	39185960	+	581.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	192715.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.23	1.51	2.28	1.21	3.27	1.88	3.65	6.28	5.31	6.03	11.56	6.89
Merged-chr6-38337404-1	chr6	38337304	38337504	+	581.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 2 of 8)	B2_Mm2|SINE|B2	17199.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	1.62	1.51	1.14	0.4	2.05	4.39	1.33	2.72	9.24	9.54	10.05	1.88
Merged-chr2-167717844-1	chr2	167717744	167717944	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26667.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	2.42	0.5	1.14	0.4	6.55	4.7	3.65	5.52	5.7	3.51	7.03	6.27
Merged-chr15-73791983-2	chr15	73791889	73792089	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033365, intron 5 of 10)	intron (NM_001033365, intron 5 of 10)	17944.0	NM_001362047	100041273.0	Mm.379154	NM_001362047		Gm3244	-	predicted pseudogene 3244	protein-coding	2.42	4.02	3.42	2.41	2.05	5.96	5.98	6.28	10.42	2.51	7.03	3.45
Merged-chr8-124912625-1	chr8	124912525	124912725	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14739.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.81	4.28	0.57	4.83	2.86	0.63	3.99	5.24	0.2	4.52	1.0	0.0
Merged-chr4-49518608-2	chr4	49518503	49518703	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178603, intron 1 of 1)	MTD|LTR|ERVL-MaLR	2480.0	NM_178603	28028.0	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	8.88	7.29	2.28	4.02	2.05	3.76	4.65	2.44	3.74	3.51	4.52	10.34
Merged-chr4-86668296-2	chr4	86668216	86668416	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	1743.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.27	5.28	11.98	4.83	3.68	6.9	4.98	3.59	4.13	9.54	3.52	2.82
Merged-chr1-59883985-2	chr1	59883889	59884089	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29017.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	2.02	6.54	6.85	2.82	3.68	3.76	3.32	4.09	9.64	1.51	5.02	9.08
Merged-chr10-8887445-1	chr10	8887345	8887545	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1375.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.21	5.03	2.28	0.8	4.09	6.59	2.99	2.16	1.57	2.51	1.51	2.19
Merged-chr15-59046932-1	chr15	59046832	59047032	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35094.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.81	1.01	0.0	0.0	5.73	3.14	4.98	5.69	6.88	5.02	3.52	6.27
Merged-chr16-10978530-1	chr16	10978430	10978630	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	14591.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	1.62	3.52	5.7	0.8	8.18	5.33	3.99	4.85	3.15	11.05	4.52	6.27
Merged-chr9-63043629-1	chr9	63043529	63043729	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62750.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	1.62	1.26	5.13	2.82	2.86	2.2	3.65	3.11	6.69	6.03	6.53	5.33
Merged-chr6-72940675-1	chr6	72940575	72940775	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17557.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.23	5.28	2.28	3.22	8.18	5.96	1.33	3.95	5.51	5.02	9.55	2.82
Merged-chr3-89299458-2	chr3	89299383	89299583	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-18532.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.44	5.79	2.28	0.8	4.5	12.54	6.98	3.2	11.21	3.51	5.02	3.45
Merged-chr14-18731202-2	chr14	18731099	18731299	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360327, intron 3 of 5)	intron (NM_001360327, intron 3 of 5)	162214.0	NM_001360328	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	3.63	9.31	4.56	8.85	8.18	5.33	5.98	4.4	5.7	10.04	8.04	7.52
Merged-chr1-105092824-2	chr1	105092720	105092920	+	581.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-263187.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	4.85	3.02	6.28	5.23	3.68	3.14	2.66	5.97	11.21	6.03	11.56	6.58
Merged-chr10-59910495-1	chr10	59910395	59910595	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	30904.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.25	2.26	2.28	6.44	1.64	5.33	1.33	4.77	5.7	5.02	12.06	5.33
Merged-chr7-35234417-1	chr7	35234317	35234517	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19072.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	4.44	3.52	6.28	3.62	3.27	2.2	5.31	4.18	3.34	2.51	0.5	4.39
Merged-chr17-35999533-1	chr17	35999433	35999633	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	5029.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	4.04	1.26	1.71	0.0	8.18	10.03	3.32	3.59	6.29	4.02	2.01	1.88
Merged-chr6-124280180-1	chr6	124280080	124280280	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24471.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.4	5.28	2.28	4.83	0.41	1.88	5.31	2.52	3.34	1.0	3.52	4.39
Merged-chr3-15999741-2	chr3	15999646	15999846	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	RLTR45|LTR|ERVK	6586.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	11.71	3.77	11.41	8.04	12.68	6.9	7.31	6.25	4.52	4.02	5.53	7.21
Merged-chr12-113128893-1	chr12	113128793	113128993	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346696, intron 10 of 19)	intron (NM_001346696, intron 10 of 19)	-11343.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	2.02	2.52	3.99	0.8	0.41	2.82	3.32	3.39	4.92	2.01	6.03	5.64
Merged-chr17-31118228-1	chr17	31118128	31118328	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009593)	TTS (NM_009593)	11383.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	1.26	4.56	2.41	7.36	3.45	7.64	4.71	5.9	2.01	2.51	4.7
Merged-chr4-105706266-1	chr4	105706166	105706366	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-534947.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	3.27	2.28	1.21	3.27	4.7	1.99	5.16	5.11	7.03	8.54	1.57
Merged-chr7-15989100-1	chr7	15989000	15989200	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081418, exon 5 of 14)	exon (NM_001081418, exon 5 of 14)	10395.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	2.42	1.51	0.0	1.61	4.5	4.08	1.66	4.79	1.77	2.01	1.0	1.57
Merged-chr5-75155870-2	chr5	75155777	75155977	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001083316)	promoter-TSS (NM_001083316)	-289.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.63	5.28	12.55	3.62	4.09	5.64	6.31	5.1	5.9	1.51	4.02	5.64
Merged-chr7-130773341-1	chr7	130773241	130773441	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081038)	promoter-TSS (NM_001081038)	-728.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	4.44	3.52	2.28	1.21	2.05	1.88	0.0	3.06	7.47	5.02	10.05	2.19
Merged-chr8-115597737-1	chr8	115597637	115597837	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109157.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.85	2.01	1.71	4.42	5.73	3.14	6.98	3.95	6.69	3.01	3.01	5.64
Merged-chr19-37702895-1	chr19	37702795	37702995	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5087.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	5.25	5.79	3.42	2.82	10.23	5.96	5.98	5.02	2.16	2.51	1.0	1.88
Merged-chr15-51673662-1	chr15	51673562	51673762	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	191799.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	1.21	0.5	2.28	0.8	1.64	1.88	2.99	5.21	2.16	3.01	1.51	0.94
Merged-chr8-46242106-1	chr8	46242006	46242206	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31044.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	3.23	3.02	0.0	1.61	5.32	7.53	7.97	5.38	9.05	7.53	5.53	2.82
Merged-chr10-20395992-1	chr10	20395892	20396092	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48173.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.4	2.01	2.28	8.04	2.45	4.7	2.66	8.3	1.57	0.0	0.0	0.94
Merged-chr12-85129823-1	chr12	85129723	85129923	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030225, exon 12 of 15)	exon (NM_030225, exon 12 of 15)	18990.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	2.42	4.02	4.56	0.0	3.27	6.27	1.33	4.23	2.75	2.01	7.03	0.94
Merged-chrX-142716227-1	chrX	142716127	142716327	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	L1M5|LINE|L1	-22773.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	1.21	2.52	10.27	0.8	4.91	7.84	0.66	4.32	5.7	4.52	2.01	2.19
Merged-chr17-8936818-1	chr17	8936718	8936918	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 5 of 21)	intron (NM_001347321, intron 5 of 21)	-51515.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	5.65	6.04	7.99	4.02	2.45	4.7	4.98	5.21	6.88	3.51	3.52	2.51
Merged-chr17-33717598-1	chr17	33717498	33717698	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252480, intron 1 of 4)	MIRb|SINE|MIR	1079.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	2.42	4.28	0.57	2.01	8.59	1.88	1.66	3.95	7.47	6.03	7.54	1.57
Merged-chr5-43771705-1	chr5	43771605	43771805	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178729, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	10444.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.81	4.28	2.28	1.61	3.27	5.64	2.99	5.19	2.56	6.03	0.0	0.31
Merged-chr3-89448985-1	chr3	89448885	89449085	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-5556.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	4.04	3.27	1.14	3.62	4.09	3.45	2.66	4.07	7.47	3.01	12.56	3.13
Merged-chr6-28460731-2	chr6	28460643	28460843	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11403.0	NM_001159925	18506.0	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	10.9	5.03	2.28	4.83	3.68	5.33	3.32	8.41	6.69	4.02	12.56	2.51
Merged-chr11-51565273-1	chr11	51565173	51565373	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153393, intron 15 of 28)	intron (NM_153393, intron 15 of 28)	-19484.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	8.48	2.77	7.42	1.61	2.45	6.59	4.32	4.4	1.97	0.0	4.02	2.19
Merged-chr1-131283177-1	chr1	131283077	131283277	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3614.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.63	3.77	6.28	1.61	3.27	5.33	3.32	3.76	3.74	2.01	4.02	4.39
Merged-chr12-112799777-1	chr12	112799677	112799877	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9198.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	11.31	4.02	1.14	8.85	4.09	2.2	1.66	2.55	6.49	5.52	3.01	2.19
Merged-chr8-25615967-1	chr8	25615867	25616067	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	13683.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	7.67	5.03	7.99	3.62	10.64	5.96	1.33	4.49	8.26	6.53	4.52	5.95
Merged-chr15-27326016-1	chr15	27325916	27326116	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-140661.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	6.86	3.27	1.71	3.62	7.36	2.82	1.66	5.3	2.16	14.06	6.03	1.25
Merged-chr17-45767857-1	chr17	45767757	45767957	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	33351.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.42	1.76	4.56	4.02	7.36	5.33	0.66	4.51	6.29	4.52	13.06	3.45
Merged-chr7-80199160-1	chr7	80199060	80199260	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	719.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.81	2.26	0.0	4.83	1.64	0.94	5.65	3.17	1.77	3.01	1.51	1.57
Merged-chr4-3799349-1	chr4	3799249	3799449	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	36306.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.85	7.55	1.14	4.02	5.32	10.03	4.32	1.09	8.26	3.51	10.05	1.25
Merged-chr4-45587440-1	chr4	45587340	45587540	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52496.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	1.62	5.28	5.7	1.61	4.91	3.14	4.65	8.19	6.69	4.52	6.03	10.65
Merged-chr17-26489604-1	chr17	26489504	26489704	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18868.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.62	0.5	1.14	0.0	3.68	1.57	0.0	0.0	0.39	0.0	2.01	1.25
Merged-chr10-56754846-1	chr10	56754746	56754946	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	322865.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.81	5.03	7.99	10.05	7.36	4.7	3.99	4.65	5.51	3.51	4.52	3.13
Merged-chr14-103840696-1	chr14	103840596	103840796	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	3005.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	1.26	0.0	1.61	4.91	8.15	6.31	3.22	0.39	2.01	4.02	2.19
Merged-chr7-35122432-1	chr7	35122332	35122532	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001287523)	TTS (NM_001287523)	3139.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	7.27	6.54	9.13	6.44	4.91	2.51	2.33	4.99	3.34	2.01	4.52	8.14
Merged-chr12-117487638-1	chr12	117487538	117487738	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28841.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.81	2.01	2.85	2.01	4.91	2.2	7.31	1.29	2.75	4.02	2.51	7.52
Merged-chr1-132388890-1	chr1	132388790	132388990	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	1428.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.85	6.04	6.85	4.02	3.68	3.45	3.32	6.39	11.01	3.51	2.01	2.51
Merged-chr5-76954684-1	chr5	76954584	76954784	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356974, intron 1 of 8)	RMER6A|LTR|ERVK	-3106.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	3.63	2.77	6.85	3.62	5.73	3.76	0.66	5.52	4.13	4.52	7.03	4.7
Merged-chr9-72082620-1	chr9	72082520	72082720	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	28581.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	8.48	3.02	2.28	2.01	2.86	5.96	0.66	4.51	5.31	1.0	8.04	8.14
Merged-chr12-112113886-1	chr12	112113786	112113986	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081169, intron 3 of 14)	intron (NM_001081169, intron 3 of 14)	-4577.0	NR_049197	100885836.0		NR_049197	ENSMUSG00000106228	Mir3073b	mir-3073b|mmu-mir-3073b	microRNA 3073b	ncRNA	5.65	2.77	2.85	1.61	4.91	5.96	2.99	4.74	8.65	5.52	4.02	10.65
Merged-chr17-10856895-1	chr17	10856795	10856995	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	16536.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	1.62	0.5	2.28	0.8	3.68	5.64	5.98	4.23	7.28	4.52	9.04	2.19
Merged-chr1-132416508-1	chr1	132416408	132416608	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-945.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	4.85	5.28	5.7	9.65	6.14	3.76	5.31	8.94	2.95	3.01	9.55	1.57
Merged-chr3-107330702-1	chr3	107330602	107330802	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2587.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	2.42	3.52	3.42	1.21	4.09	6.27	1.99	6.14	4.72	2.51	4.52	3.13
Merged-chr1-74239880-1	chr1	74239780	74239980	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3363.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	2.42	6.79	11.98	9.25	4.5	1.25	1.99	3.84	6.69	2.01	7.54	6.27
Merged-chr2-93199688-2	chr2	93199593	93199793	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025246, intron 7 of 7)	intron (NM_001025246, intron 7 of 7)	12145.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	3.23	7.55	2.28	6.44	4.91	1.88	4.98	4.85	4.13	4.52	7.54	6.27
Merged-chr19-28678717-1	chr19	28678617	28678817	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	493.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	7.67	5.53	3.42	2.01	5.32	2.51	1.99	3.14	1.18	3.51	2.01	0.63
Merged-chr15-23591016-1	chr15	23590916	23591116	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	554553.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	2.42	1.01	4.56	4.83	5.73	3.76	1.33	6.2	4.13	1.51	3.01	4.7
Merged-chrX-93929943-2	chrX	93929832	93930032	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-38724.0	NR_028320	385493.0	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	4.85	2.01	10.27	12.87	3.68	3.45	2.66	4.32	6.88	1.0	6.53	1.25
Merged-chrX-160794489-1	chrX	160794389	160794589	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011302, intron 5 of 5)	intron (NM_011302, intron 5 of 5)	26476.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	6.46	1.51	1.14	4.02	6.95	3.14	1.66	6.31	7.08	2.01	6.03	1.57
Merged-chr9-82977158-1	chr9	82977058	82977258	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1669.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	3.23	3.02	3.42	4.83	0.82	0.63	0.66	1.77	2.56	0.0	2.51	6.89
Merged-chr15-13469388-1	chr15	13469288	13469488	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-295713.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.62	1.51	2.85	1.61	1.64	3.76	1.33	6.28	6.1	1.0	3.01	0.63
Merged-chr7-46825206-1	chr7	46825106	46825306	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20598.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	3.23	5.53	2.28	5.63	4.91	4.08	4.65	3.84	10.62	10.04	6.03	6.58
Merged-chrX-48020089-1	chrX	48019989	48020189	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14764.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	3.23	4.02	2.28	2.41	2.45	2.51	3.32	5.44	9.44	10.04	3.01	0.63
Merged-chr3-151742452-1	chr3	151742352	151742552	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133871, intron 5 of 7)	RMER20B|LTR|ERVK	7507.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	1.21	0.5	5.7	1.61	3.27	0.63	1.0	1.49	7.67	10.54	11.05	8.14
Merged-chr2-59019195-1	chr2	59019095	59019295	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	141488.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	2.42	1.26	4.56	1.61	6.55	3.14	7.97	4.4	2.36	2.01	2.51	5.01
Merged-chr3-89337768-1	chr3	89337668	89337868	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007910, intron 1 of 3)	CpG	260.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	6.86	1.76	9.7	3.62	4.5	5.33	2.33	7.68	2.95	3.51	1.51	2.19
Merged-chr12-111454308-2	chr12	111454199	111454399	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009396, exon 12 of 12)	3' UTR (NM_009396, exon 12 of 12)	11638.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.88	4.28	8.56	2.01	6.95	6.27	5.31	3.39	12.78	9.04	10.05	4.39
Merged-chr2-93421575-1	chr2	93421475	93421675	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_105967)	TTS (NR_105967)	432.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	10.5	7.8	2.28	6.44	2.05	0.63	2.33	0.98	4.52	3.01	8.04	2.82
Merged-chr19-4059954-1	chr19	4059854	4060054	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362043)	promoter-TSS (NM_001362043)	-507.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	6.46	4.02	12.55	4.83	5.73	5.33	2.33	2.24	8.65	10.54	2.51	8.14
Merged-chr6-39084400-1	chr6	39084300	39084500	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011539, exon 13 of 13)	3' UTR (NM_011539, exon 13 of 13)	-16814.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.81	2.01	1.14	1.61	1.64	1.25	4.98	3.59	3.74	4.02	4.52	4.39
Merged-chr8-123411525-1	chr8	123411425	123411625	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023279)	promoter-TSS (NM_023279)	-39.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	9.29	9.06	1.14	8.04	4.5	5.33	0.33	3.03	4.72	7.53	8.54	2.51
Merged-chr11-51815482-1	chr11	51815382	51815582	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41999.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.63	1.01	0.57	1.21	5.73	2.82	2.33	5.69	7.08	7.03	7.03	4.07
Merged-chr12-44199423-1	chr12	44199323	44199523	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10645.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	7.67	6.79	0.57	0.0	1.23	1.88	0.66	0.95	3.93	2.51	1.0	2.51
Merged-chr9-26962408-1	chr9	26962308	26962508	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37141.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0.0	0.0	1.71	3.22	3.27	4.08	6.98	5.05	1.97	2.51	2.51	1.25
Merged-chr14-51156856-1	chr14	51156756	51156956	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-5404.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	4.44	2.01	11.41	6.03	7.36	7.21	3.65	4.99	6.29	8.54	7.54	6.58
Merged-chr1-131528968-1	chr1	131528868	131529068	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175382, intron 1 of 3)	intron (NM_175382, intron 1 of 3)	1065.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	4.85	5.28	0.0	2.41	4.91	2.2	1.99	5.47	4.13	5.52	7.54	5.01
Merged-chr4-116336481-1	chr4	116336381	116336581	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042743, intron 6 of 29)	RLTR12B|LTR|ERVK	113734.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	4.44	3.52	1.71	3.62	6.95	6.9	1.99	1.6	8.26	5.02	10.55	2.82
Merged-chr15-98869640-1	chr15	98869540	98869740	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	1565.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	6.46	5.28	1.14	1.21	3.68	4.39	2.33	4.96	4.13	2.51	5.02	3.45
Merged-chr8-83596604-1	chr8	83596504	83596704	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER12|LTR|ERVK	-2113.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	3.23	4.53	2.85	9.65	8.18	7.53	3.32	4.91	5.31	7.03	3.52	2.82
Merged-chr2-147083681-2	chr2	147083596	147083796	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023504)	TTS (NM_023504)	1649.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	8.08	5.79	4.56	2.01	4.5	10.98	7.97	0.73	7.28	9.54	4.52	5.95
Merged-chr2-45754401-1	chr2	45754301	45754501	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57796.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	1.21	2.01	1.14	1.61	5.73	8.47	7.97	3.5	0.79	0.5	0.0	0.0
Merged-chr17-8224916-1	chr17	8224816	8225016	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11127.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	6.46	7.8	3.42	4.42	4.91	3.76	3.32	3.14	4.92	1.0	4.02	2.19
Merged-chr4-129696045-1	chr4	129695945	129696145	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356378, intron 1 of 9)	intron (NM_001356378, intron 1 of 9)	800.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	1.21	2.77	1.14	1.61	3.27	6.27	1.66	4.43	2.36	1.51	0.5	0.94
Merged-chr9-99496019-1	chr9	99495919	99496119	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	25598.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.85	0.5	6.28	4.83	8.18	6.9	8.3	4.09	8.85	4.02	3.52	2.51
Merged-chr19-4203052-1	chr19	4202952	4203152	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1449.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	4.85	0.0	7.42	3.62	0.82	0.94	4.65	4.71	4.52	2.01	0.5	3.76
Merged-chr2-118902542-3	chr2	118902485	118902685	+	580.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	CpG	970.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	8.08	6.04	3.99	2.01	4.09	1.25	6.98	5.3	5.51	7.53	6.53	6.58
Merged-chr7-30205588-1	chr7	30205488	30205688	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ETnERV-int|LTR|ERVK	-10435.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	6.46	8.3	4.56	2.82	5.73	5.64	1.0	3.53	8.46	8.03	11.05	3.76
Merged-chr6-136858444-1	chr6	136858344	136858544	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026639)	promoter-TSS (NM_026639)	-844.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	4.04	8.05	5.7	5.63	7.77	2.82	3.32	3.7	0.59	0.0	0.0	1.88
Merged-chr8-116946035-1	chr8	116945935	116946135	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	2642.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	1.21	4.53	5.13	5.63	5.73	5.33	8.97	5.3	6.49	7.03	4.52	2.51
Merged-chr10-79926485-3	chr10	79926331	79926531	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-612.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	8.88	7.55	1.14	3.22	1.64	4.7	4.98	2.61	11.01	7.53	7.54	6.27
Merged-chr11-58640591-1	chr11	58640491	58640691	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001039047, exon 1 of 6)	exon (NM_001039047, exon 1 of 6)	126.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	2.83	5.53	6.85	6.84	6.55	4.7	5.98	5.86	1.57	9.04	3.01	4.39
Merged-chr1-23237912-2	chr1	23237808	23238008	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34361.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	6.46	3.52	10.27	9.25	5.73	5.02	5.31	6.48	5.9	3.51	6.53	2.19
Merged-chr11-17003827-1	chr11	17003727	17003927	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	MIR|SINE|MIR	4891.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.06	6.04	1.14	6.44	2.86	4.7	4.32	2.64	5.7	4.02	3.01	4.7
Merged-chr5-25089759-1	chr5	25089659	25089859	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	10883.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	1.62	2.77	0.0	0.8	7.36	6.27	5.65	5.3	2.75	2.51	2.01	2.51
Merged-chr3-79883349-1	chr3	79883249	79883449	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2581.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.63	7.29	1.14	3.22	1.64	4.08	5.31	3.73	1.77	0.5	5.02	2.51
Merged-chr19-7580831-1	chr19	7580731	7580931	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23346.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	5.65	4.53	1.71	6.03	0.0	4.08	0.0	5.64	4.33	8.54	9.55	6.27
Merged-chr16-33658905-2	chr16	33658759	33658959	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 11 of 11)	(TC)n|Simple_repeat|Simple_repeat	-25607.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.44	8.3	7.99	8.04	6.55	2.51	4.65	3.06	1.97	1.51	2.51	3.76
Merged-chr2-91347889-1	chr2	91347789	91347989	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	82774.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.44	1.26	9.13	4.83	2.86	7.84	5.31	3.53	4.33	8.03	4.52	6.58
Merged-chr9-44637837-1	chr9	44637737	44637937	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	32945.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	6.46	2.01	3.42	7.24	6.95	1.25	4.98	5.36	3.74	3.01	1.0	4.39
Merged-chr4-99484371-2	chr4	99484266	99484466	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-171933.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	1.62	1.01	2.85	4.02	2.45	5.33	4.65	7.32	8.06	5.52	14.07	5.33
Merged-chr13-46737608-1	chr13	46737508	46737708	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-9759.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.63	4.53	6.28	2.41	8.18	8.78	2.99	5.21	4.33	10.04	3.01	3.76
Merged-chr5-100536864-2	chr5	100536762	100536962	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359204, intron 7 of 10)	intron (NM_001359204, intron 7 of 10)	18553.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	8.48	2.26	10.27	0.0	2.86	3.76	6.31	6.31	8.06	6.53	13.57	7.21
Merged-chr2-121139473-1	chr2	121139373	121139573	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-955.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	1.62	1.51	0.0	0.8	4.91	4.08	1.66	4.23	2.36	2.51	0.0	5.95
Merged-chr11-70944764-2	chr11	70944659	70944859	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083331, intron 12 of 16)	intron (NM_001083331, intron 12 of 16)	25214.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	8.08	4.78	3.42	12.87	3.27	5.33	2.99	3.73	12.39	7.53	12.56	4.07
Merged-chr7-98779113-2	chr7	98779014	98779214	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55998.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.85	2.26	5.7	6.84	6.55	5.02	5.65	4.51	7.08	13.05	9.55	4.39
Merged-chr16-32010561-1	chr16	32010461	32010661	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7274.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	7.27	2.26	5.7	1.61	7.77	8.47	3.65	2.97	4.52	6.53	7.03	7.83
Merged-chr4-3773795-1	chr4	3773695	3773895	+	580.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	B1_Mus1|SINE|Alu	58831.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	4.85	4.78	2.28	4.83	3.68	5.64	7.31	2.13	7.67	9.04	8.04	5.95
Merged-chr5-124482820-3	chr5	124482709	124482909	+	580.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029532)	promoter-TSS (NM_029532)	-346.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	6.46	10.06	7.99	8.04	3.27	9.41	4.98	5.16	7.28	3.51	8.54	3.45
Merged-chr16-18108416-3	chr16	18108305	18108505	+	580.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19215.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	5.25	5.03	13.12	9.65	5.73	7.84	7.31	6.17	7.47	10.04	20.1	8.46
Merged-chr5-105354200-1	chr5	105354100	105354300	+	580.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7724.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	8.08	15.34	10.27	5.63	6.95	10.98	2.33	3.28	12.0	7.53	9.04	8.46
Merged-chr13-8785440-1	chr13	8785340	8785540	+	580.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85604.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	1.76	3.42	1.61	4.5	7.84	3.65	4.15	5.51	4.52	1.51	3.76
Merged-chr2-25263194-1	chr2	25263094	25263294	+	580.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	596.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	6.06	4.78	1.14	10.05	6.55	8.47	7.64	5.58	12.39	5.02	5.02	6.89
Merged-chr7-19932849-1	chr7	19932749	19932949	+	580.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11706.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	1.62	1.51	0.57	4.02	1.64	1.57	6.64	1.15	6.49	3.01	1.51	5.95
Merged-chr2-145810857-2	chr2	145810750	145810950	+	580.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	B3|SINE|B2	24734.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.65	4.02	6.28	3.22	5.73	5.96	1.66	2.64	9.83	4.02	8.54	7.52
Merged-chr13-76689555-2	chr13	76689452	76689652	+	580.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 3 of 20)	B4A|SINE|B4	304591.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	7.67	2.26	1.14	7.24	0.82	3.76	5.31	4.01	10.62	4.52	13.57	5.95
Merged-chr15-80266491-2	chr15	80266396	80266596	+	580.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2190.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	11.71	6.79	2.28	0.8	9.82	7.84	0.66	5.8	3.54	11.55	5.02	2.82
Merged-chr5-92603520-2	chr5	92603440	92603640	+	580.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175096, intron 1 of 1)	CpG	489.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	2.42	6.29	0.0	2.82	6.95	5.33	4.65	4.15	3.34	5.52	4.02	6.58
Merged-chr7-109026221-1	chr7	109026121	109026321	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021885, intron 6 of 11)	intron (NM_021885, intron 6 of 11)	15341.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	8.88	6.79	7.99	11.26	4.5	5.02	0.33	12.73	4.13	4.52	3.01	3.13
Merged-chr14-31380007-1	chr14	31379907	31380107	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37670.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.83	7.29	3.42	1.61	5.73	2.51	4.65	2.94	15.54	9.54	11.05	3.13
Merged-chr2-113491670-1	chr2	113491570	113491770	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 3 of 16)	CT-rich|Low_complexity|Low_complexity	50606.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.83	2.26	1.71	6.84	3.27	3.76	1.99	2.75	0.79	0.0	0.5	0.0
Merged-chr5-104074524-1	chr5	104074424	104074624	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163772, intron 4 of 9)	intron (NM_001163772, intron 4 of 9)	3084.0	NM_001163772	100271704.0	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	3.23	5.53	0.57	6.84	5.73	7.84	3.32	4.26	2.56	1.51	1.51	3.45
Merged-chr1-135811497-1	chr1	135811397	135811597	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001112702)	TTS (NM_001112702)	-7101.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	2.83	12.83	4.56	4.02	3.68	5.02	3.65	2.64	6.88	12.05	8.04	6.27
Merged-chr15-99098365-1	chr15	99098265	99098465	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1119.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.81	1.01	3.42	2.41	4.09	7.21	2.66	1.01	1.77	3.01	3.52	2.19
Merged-chrX-7693038-1	chrX	7692938	7693138	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4096.0	NM_173747	209416.0	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	8.88	4.53	3.42	0.8	6.95	13.17	1.66	4.91	6.29	1.0	8.04	5.95
Merged-chr14-21048067-1	chr14	21047967	21048167	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018829, intron 1 of 8)	PB1|SINE|Alu	4375.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.4	2.77	4.56	3.22	2.05	5.02	1.33	7.6	3.93	5.52	5.02	2.82
Merged-chr3-88406436-1	chr3	88406336	88406536	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3961.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.04	8.55	9.13	4.83	3.68	1.57	0.0	4.88	9.05	4.02	4.02	2.82
Merged-chr7-49246698-2	chr7	49246625	49246825	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175272, exon 1 of 38)	5' UTR (NM_175272, exon 1 of 38)	536.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.23	7.55	11.41	2.82	8.18	5.02	1.33	3.93	6.88	1.0	2.51	0.94
Merged-chr1-36309222-1	chr1	36309122	36309322	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1489.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.81	0.5	2.28	2.41	5.32	6.9	1.99	4.07	2.36	3.51	0.5	4.39
Merged-chr16-94549954-1	chr16	94549854	94550054	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20252.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.04	3.27	3.42	4.83	7.36	1.88	3.65	4.65	3.74	6.53	10.55	1.88
Merged-chr16-58462073-2	chr16	58461969	58462169	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356484, intron 13 of 15)	B2_Mm2|SINE|B2	53534.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	6.46	4.02	8.56	0.8	8.18	3.14	4.98	3.62	10.23	5.02	10.05	4.39
Merged-chr10-20827680-1	chr10	20827580	20827780	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-102602.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	1.62	2.01	1.14	0.8	2.05	3.14	5.98	7.74	3.54	7.53	6.03	2.19
Merged-chr8-108778334-1	chr8	108778234	108778434	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	63690.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.65	2.26	2.85	8.04	7.36	1.25	3.32	3.36	0.2	0.5	1.0	0.63
Merged-chr4-117188867-1	chr4	117188767	117188967	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6243.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	2.02	3.02	5.13	0.4	0.41	3.45	2.33	3.7	7.47	8.54	4.02	7.83
Merged-chr15-99024876-1	chr15	99024776	99024976	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5015.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.86	4.28	1.14	2.41	2.45	1.25	7.31	4.57	6.29	7.03	10.55	6.58
Merged-chr8-126721807-1	chr8	126721707	126721907	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127213.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	1.21	0.75	4.56	10.05	4.5	3.45	7.31	7.63	1.57	3.51	2.51	5.33
Merged-chr7-144469395-1	chr7	144469295	144469495	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	1540.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	6.06	9.31	2.85	9.25	2.45	0.63	1.33	2.61	5.7	3.51	2.01	5.64
Merged-chr13-83524784-1	chr13	83524684	83524884	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	41.0	NM_001347580	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	2.42	1.51	0.0	2.82	12.68	5.64	2.66	4.85	3.15	2.01	3.01	2.19
Merged-chr5-124095410-1	chr5	124095310	124095510	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	388.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	4.85	5.28	0.57	1.21	7.77	6.27	3.99	2.41	8.65	10.04	14.07	5.95
Merged-chr6-122934546-1	chr6	122934446	122934646	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_199311)	TTS (NM_199311)	12698.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	7.67	4.02	7.99	5.63	8.18	5.64	2.33	4.88	3.34	0.5	7.54	3.76
Merged-chr5-52435675-1	chr5	52435575	52435775	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-5484.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	3.63	2.26	10.27	11.26	5.32	4.39	2.66	4.18	7.28	5.02	8.54	0.63
Merged-chr7-122033545-1	chr7	122033445	122033645	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026140)	TTS (NM_026140)	-12347.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	2.83	2.26	2.85	4.83	2.05	4.39	1.0	6.0	8.26	5.02	9.55	5.64
Merged-chr14-20640218-1	chr14	20640118	20640318	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16322.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	5.65	5.03	0.0	1.21	3.27	6.27	2.99	4.65	4.72	6.53	2.51	1.88
Merged-chr5-24841317-1	chr5	24841217	24841417	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	1044.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	1.76	4.56	3.22	2.45	1.25	5.31	3.48	5.11	5.02	4.52	5.33
Merged-chr6-145305775-1	chr6	145305675	145305875	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	55223.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0.81	4.53	0.0	2.82	5.32	3.14	2.99	2.69	6.49	9.04	3.52	9.08
Merged-chr11-105447944-1	chr11	105447844	105448044	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039242, intron 3 of 5)	intron (NM_001039242, intron 3 of 5)	8791.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.86	2.52	1.71	6.44	4.09	7.84	5.31	5.64	3.54	6.53	8.54	5.01
Merged-chr9-120708340-1	chr9	120708240	120708440	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131009.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.23	2.01	0.0	0.0	4.5	5.64	3.32	10.6	0.2	0.0	1.0	0.0
Merged-chr17-36024242-1	chr17	36024142	36024342	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3682.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	6.06	4.78	0.0	2.01	9.82	6.27	3.65	5.07	9.44	6.03	9.04	1.57
Merged-chr3-136323905-1	chr3	136323805	136324005	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	2161.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	1.62	6.04	0.0	3.22	1.23	3.45	5.31	4.35	1.57	3.01	2.51	1.88
Merged-chr4-154854913-1	chr4	154854813	154855013	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1287.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	2.02	2.26	3.42	2.41	2.86	8.15	1.99	3.62	1.18	0.5	2.51	0.94
Merged-chr13-113610376-1	chr13	113610276	113610476	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	8188.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.65	7.29	2.28	4.83	6.55	14.42	4.98	4.96	7.28	11.55	5.53	1.25
Merged-chr4-125126870-1	chr4	125126770	125126970	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_153159, exon 2 of 6)	exon (NM_153159, exon 2 of 6)	1011.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.25	7.04	12.55	1.61	2.86	4.39	7.31	1.93	4.13	3.51	6.03	5.01
Merged-chr11-117476153-1	chr11	117476053	117476253	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8215.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	4.04	1.51	9.13	5.63	5.73	6.9	1.99	4.63	2.16	1.51	1.0	2.82
Merged-chr8-24428525-1	chr8	24428425	24428625	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10421.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	2.02	2.77	3.99	0.0	3.27	3.76	1.99	3.53	3.34	7.53	3.01	2.19
Merged-chr11-107581462-1	chr11	107581362	107581562	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 4 of 31)	intron (NM_198298, intron 4 of 31)	33502.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.4	2.01	2.28	1.61	0.41	0.31	0.0	0.0	8.06	5.02	8.54	3.76
Merged-chr11-20436339-1	chr11	20436239	20436439	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17D2|LTR|ERVK	-103626.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.63	6.29	3.99	2.41	2.86	3.14	5.98	4.35	7.47	5.02	8.54	3.13
Merged-chr1-138921408-1	chr1	138921308	138921508	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-42301.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	12.52	4.53	10.84	4.42	3.27	7.21	3.32	1.99	4.13	4.02	3.01	0.31
Merged-chr18-53861458-2	chr18	53861331	53861531	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-682.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.65	6.04	12.55	10.05	4.91	3.14	1.99	4.57	3.34	9.54	1.0	2.51
Merged-chr16-36659464-1	chr16	36659364	36659564	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	6613.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.46	5.03	2.28	1.21	6.55	2.82	1.99	1.23	3.93	4.02	1.51	2.82
Merged-chr5-96758336-1	chr5	96758236	96758436	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175473, intron 62 of 73)	intron (NM_175473, intron 62 of 73)	-35049.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.04	1.01	3.42	2.82	6.55	2.82	2.66	9.34	1.18	0.0	1.0	0.0
Merged-chr5-23440003-1	chr5	23439903	23440103	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026984, intron 1 of 25)	intron (NM_026984, intron 1 of 25)	5574.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.81	4.53	4.56	2.41	6.55	6.27	1.0	4.29	3.15	10.04	8.04	3.76
Merged-chr15-50824099-1	chr15	50823999	50824199	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 3 of 5)	MTC|LTR|ERVL-MaLR	64950.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.21	0.5	3.42	0.0	1.64	1.25	5.31	4.68	5.7	8.03	7.03	3.13
Merged-chr15-83021424-1	chr15	83021324	83021524	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	1714.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.23	4.53	0.0	1.61	4.5	3.14	2.66	6.93	9.64	7.03	3.52	5.95
Merged-chr6-34277888-1	chr6	34277788	34277988	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39555.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	7.67	2.01	4.56	3.62	2.45	7.53	3.32	5.69	1.38	4.02	4.52	5.01
Merged-chr11-121736332-1	chr11	121736232	121736432	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33905.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.04	3.77	10.27	0.0	5.73	16.93	6.98	3.81	11.6	11.55	6.03	5.33
Merged-chr8-61561989-1	chr8	61561889	61562089	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29180.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.06	10.82	7.42	0.0	4.91	17.56	4.32	2.94	11.41	4.52	9.55	3.76
Merged-chr17-34628181-1	chr17	34628081	34628281	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	98.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	6.06	2.26	3.99	1.61	1.23	5.33	6.31	4.04	5.51	3.51	7.03	5.64
Merged-chr9-15294596-1	chr9	15294496	15294696	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359258, intron 3 of 7)	intron (NM_001359258, intron 3 of 7)	7011.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	4.04	0.0	0.0	1.21	6.55	0.0	2.66	5.33	0.59	1.0	0.0	1.88
Merged-chr9-108055187-1	chr9	108055087	108055287	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177275, exon 1 of 1)	3' UTR (NM_177275, exon 1 of 1)	2028.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	3.63	3.52	3.42	6.84	2.05	3.14	7.64	5.58	4.33	1.0	4.52	1.25
Merged-chr13-59970758-1	chr13	59970658	59970858	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58953.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.81	2.01	0.57	0.0	3.68	5.96	5.31	5.05	0.39	4.52	1.0	1.88
Merged-chr14-18263659-1	chr14	18263559	18263759	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7322.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	4.04	0.5	1.14	4.02	8.18	0.63	1.99	4.96	2.16	1.0	2.01	2.51
Merged-chr15-78270797-1	chr15	78270697	78270897	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14052.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	2.42	1.76	6.85	1.61	8.59	2.2	0.66	5.97	2.95	1.0	4.52	2.51
Merged-chr12-85990593-1	chr12	85990493	85990693	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	88448.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	2.42	4.02	10.27	10.46	3.68	4.7	2.66	3.31	7.67	4.02	1.0	6.27
Merged-chr7-118304968-1	chr7	118304868	118305068	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61061.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	3.23	2.77	2.85	6.03	6.14	11.6	4.32	3.67	9.64	6.03	7.03	1.88
Merged-chr1-55089035-1	chr1	55088935	55089135	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001356512)	promoter-TSS (NM_001356512)	-792.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	6.86	5.03	9.13	3.22	0.82	3.76	2.66	3.2	2.95	7.53	6.03	4.39
Merged-chr7-118480019-1	chr7	118479919	118480119	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	11956.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.23	4.28	2.28	7.64	4.09	13.8	1.66	3.14	6.29	7.03	7.03	6.58
Merged-chr1-37505391-1	chr1	37505291	37505491	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 2 of 15)	intron (NM_173870, intron 2 of 15)	-16786.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	1.62	2.01	2.28	0.8	4.91	3.14	6.31	4.35	1.57	1.51	8.04	3.45
Merged-chr14-103694526-1	chr14	103694426	103694626	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045148, exon 3 of 3)	non-coding (NR_045148, exon 3 of 3)	4906.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	4.85	3.27	2.28	3.22	12.68	2.2	1.66	5.41	10.82	4.02	7.03	1.57
Merged-chr11-116368311-1	chr11	116368211	116368411	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	-32957.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	1.21	3.02	0.0	4.02	8.18	6.9	0.66	3.56	9.24	4.52	10.55	7.83
Merged-chr1-131974835-1	chr1	131974735	131974935	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	4226.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.81	2.77	3.99	0.8	4.09	3.76	10.63	4.07	3.93	5.52	7.54	2.19
Merged-chr5-137776634-1	chr5	137776534	137776734	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2270.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	10.09	7.29	9.13	5.23	3.68	9.41	2.66	4.26	8.65	12.05	6.53	5.01
Merged-chr13-24380805-1	chr13	24380705	24380905	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-34317.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.04	1.76	1.14	4.02	0.41	1.25	2.33	1.46	4.72	6.03	6.53	5.33
Merged-chr5-36757224-2	chr5	36757132	36757332	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8553.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	4.04	4.78	5.13	3.62	7.36	8.15	4.98	5.64	8.65	17.07	9.55	6.89
Merged-chr9-46933398-1	chr9	46933298	46933498	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19795.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.0	1.01	1.14	1.61	3.27	6.59	2.33	4.23	2.16	5.02	9.04	3.45
Merged-chr6-121366744-1	chr6	121366644	121366844	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_133661)	TTS (NM_133661)	20047.0	NM_133661	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	4.85	10.06	2.85	6.44	6.95	6.27	1.0	5.55	18.88	5.02	11.05	4.07
Merged-chr3-37331375-1	chr3	37331275	37331475	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17278.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	1.01	0.0	0.0	2.05	2.51	4.65	8.36	2.36	2.51	3.01	2.19
Merged-chr6-146481610-1	chr6	146481510	146481710	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	20613.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	5.25	2.01	1.71	2.41	1.23	5.64	2.33	5.61	4.72	0.0	2.01	1.25
Merged-chr11-76611051-1	chr11	76610951	76611151	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33312.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.23	5.28	13.12	2.41	9.41	7.53	1.99	3.7	9.44	5.02	7.03	4.7
Merged-chr18-35889202-2	chr18	35889118	35889318	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	34531.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	7.27	7.04	6.85	4.02	5.32	4.7	3.65	4.01	4.13	6.53	6.53	5.33
Merged-chr8-61686528-1	chr8	61686428	61686628	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	73570.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.46	2.77	6.28	10.86	1.64	5.33	0.66	4.4	2.95	7.03	5.02	3.45
Merged-chr19-54045249-1	chr19	54045149	54045349	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007417)	promoter-TSS (NM_007417)	67.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	8.48	4.02	1.71	3.62	0.82	5.64	3.99	0.48	4.33	0.5	2.01	2.51
Merged-chr15-84994215-1	chr15	84994115	84994315	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6244.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.04	4.28	2.85	2.41	6.95	4.39	3.32	4.29	7.08	5.52	5.02	5.64
Merged-chr1-168430306-1	chr1	168430206	168430406	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183355, intron 1 of 8)	intron (NM_183355, intron 1 of 8)	1863.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	2.02	2.77	3.42	1.21	0.41	2.51	4.32	6.06	4.52	4.52	5.53	2.51
Merged-chr15-72980945-1	chr15	72980845	72981045	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 8 of 21)	intron (NM_029640, intron 8 of 21)	74867.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	2.42	2.52	3.99	0.8	3.68	4.7	2.33	4.77	4.92	0.5	15.07	2.82
Merged-chr12-9570105-1	chr12	9570005	9570205	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045488, intron 2 of 3)	intron (NR_045488, intron 2 of 3)	480.0	NR_045488	69420.0	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA	2.02	3.27	1.14	0.4	5.32	2.2	2.99	4.35	3.34	4.52	3.52	2.19
Merged-chr4-155550646-1	chr4	155550546	155550746	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-11735.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.85	1.01	3.42	7.24	5.32	5.64	2.66	5.97	10.03	5.52	3.52	2.19
Merged-chr18-36282018-1	chr18	36281918	36282118	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	856.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	8.48	5.53	1.14	2.01	1.64	3.76	6.31	3.9	3.93	5.02	2.51	5.95
Merged-chr4-59262418-1	chr4	59262318	59262518	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	2367.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	5.25	5.53	3.42	3.22	12.27	8.15	1.66	4.29	7.87	0.5	2.51	3.45
Merged-chr13-45967698-1	chr13	45967598	45967798	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2707.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.04	1.26	6.85	0.8	3.27	5.64	1.0	3.67	3.34	5.02	0.0	4.07
Merged-chr3-81127259-1	chr3	81127159	81127359	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90843.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.81	1.51	3.42	0.4	5.73	5.02	1.33	5.83	6.49	6.03	7.03	4.39
Merged-chr3-123053394-1	chr3	123053294	123053494	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18407.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	4.85	1.26	9.7	3.22	0.0	3.45	7.64	5.24	5.31	4.52	11.56	4.7
Merged-chr2-92484457-1	chr2	92484357	92484557	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23939.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	1.62	1.51	1.14	2.41	3.68	6.9	1.99	5.16	7.87	10.54	7.03	7.83
Merged-chr2-165907346-1	chr2	165907246	165907446	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22508.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	4.53	2.85	0.0	2.05	1.25	1.99	2.16	8.26	4.02	14.57	4.7
Merged-chr10-30710378-2	chr10	30710282	30710482	+	579.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-54515.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.02	2.77	0.57	9.65	6.55	2.82	4.65	4.37	10.82	8.54	12.56	4.7
Merged-chr16-57556469-2	chr16	57556369	57556569	+	579.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	7227.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.02	3.27	2.28	5.23	5.32	6.27	2.66	4.77	9.05	8.54	12.56	6.58
Merged-chr7-84102744-2	chr7	84102647	84102847	+	579.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16242.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	5.65	4.78	11.98	4.42	7.36	3.45	3.65	8.61	9.05	4.52	8.04	1.57
Merged-chr15-6391322-1	chr15	6391222	6391422	+	579.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4574.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.46	7.29	14.83	12.07	7.36	7.21	4.98	4.82	8.06	5.02	8.04	1.88
Merged-chr16-44050550-1	chr16	44050450	44050650	+	579.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8542.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.04	4.02	6.85	2.41	4.09	3.45	4.32	2.92	3.34	5.02	6.53	4.07
Merged-chr8-75154024-2	chr8	75153937	75154137	+	579.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	44528.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.44	4.02	7.99	4.02	6.55	6.59	4.65	4.74	11.01	7.53	9.04	4.7
Merged-chr4-21727032-2	chr4	21726929	21727129	+	579.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-672.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	4.04	6.29	10.27	19.31	9.41	10.03	6.98	3.67	12.19	1.0	5.53	6.58
Merged-chr15-3202449-1	chr15	3202349	3202549	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68318.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.23	1.51	0.0	1.61	9.82	7.84	1.66	4.46	5.9	5.02	7.54	2.82
Merged-chr3-96058434-1	chr3	96058334	96058534	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	21.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	2.42	4.28	1.71	1.61	11.05	5.64	4.98	5.41	1.97	1.51	2.01	2.51
Merged-chr15-91661102-1	chr15	91661002	91661202	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12122.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	7.27	1.76	3.99	1.61	0.82	5.02	4.98	3.14	1.38	0.5	4.02	1.57
Merged-chr6-92286685-1	chr6	92286585	92286785	+	579.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42035.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	1.62	1.01	1.14	1.61	5.32	2.51	1.33	2.1	5.51	11.55	14.07	7.21
Merged-chr11-54645310-2	chr11	54645211	54645411	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 16 of 28)	ORR1D2|LTR|ERVL-MaLR	49165.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	2.42	2.52	5.13	5.23	3.27	5.33	2.33	9.39	8.46	1.0	14.07	6.27
Merged-chr4-117125653-1	chr4	117125553	117125753	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024078)	promoter-TSS (NR_024078)	72.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	4.85	2.77	3.42	0.8	4.09	4.7	3.32	5.05	3.15	6.53	1.0	1.57
Merged-chr3-27184661-1	chr3	27184561	27184761	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	1657.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	1.21	1.76	3.42	5.63	2.86	5.96	4.65	4.68	5.51	6.03	3.52	2.82
Merged-chr4-88115620-2	chr4	88115505	88115705	+	579.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081184, intron 1 of 43)	intron (NM_001081184, intron 1 of 43)	-6435.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.81	1.51	6.28	1.61	6.55	4.08	6.98	2.8	9.05	6.03	2.01	3.76
Merged-chr5-135952031-2	chr5	135951935	135952135	+	579.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-17394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	3.23	7.04	10.27	7.24	5.32	6.27	6.64	3.36	6.69	11.55	9.04	8.46
Merged-chr4-150603593-1	chr4	150603493	150603693	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	48581.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.27	1.76	5.7	4.02	8.18	5.64	3.65	4.74	16.72	7.03	8.54	8.14
Merged-chr19-42713366-1	chr19	42713266	42713466	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39409.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	6.46	2.52	2.28	2.82	6.95	4.7	1.99	5.69	2.75	6.03	4.52	1.57
Merged-chr1-30905204-1	chr1	30905104	30905304	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41948.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.4	3.27	3.42	2.82	0.0	4.08	4.65	4.85	2.75	2.01	6.03	2.82
Merged-chr11-103173590-1	chr11	103173490	103173690	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2452.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	6.06	4.28	6.85	10.05	4.91	7.84	5.98	3.67	10.23	3.51	6.53	3.13
Merged-chr16-21644139-2	chr16	21644078	21644278	+	579.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285894, exon 46 of 46)	exon (NM_001285894, exon 46 of 46)	50487.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.63	2.52	11.41	0.8	7.77	2.2	2.66	2.92	3.93	5.02	4.02	1.57
Merged-chr12-85279787-1	chr12	85279687	85279887	+	579.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025421, intron 2 of 2)	intron (NM_025421, intron 2 of 2)	648.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	2.02	3.77	0.0	3.62	6.95	8.78	1.66	3.64	7.87	8.03	2.51	5.33
Merged-chr18-15150922-2	chr18	15150793	15150993	+	579.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134112, intron 1 of 4)	CpG	553.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	7.67	4.28	4.56	4.02	4.09	2.82	5.98	4.09	6.1	8.03	3.01	5.64
Merged-chr7-4297329-2	chr7	4297254	4297454	+	579.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23165.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	1.21	3.02	7.99	6.44	9.82	7.53	1.66	4.6	9.64	7.53	5.02	7.83
Merged-chr12-44202294-1	chr12	44202194	44202394	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	7774.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	1.62	6.29	0.0	0.0	0.82	5.64	1.33	0.93	8.26	11.05	2.01	1.25
Merged-chr6-48435879-1	chr6	48435779	48435979	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001085415)	TTS (NM_001085415)	9211.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	3.63	2.77	0.0	0.8	3.27	4.7	4.65	2.21	8.26	2.01	9.04	10.34
Merged-chr4_GL456216_random-38951-1	chr4_GL456216_random	38851	39051	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23070.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9.83	10.04	7.54	12.22
Merged-chr1-42714491-1	chr1	42714391	42714591	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1037.0	NR_110495	66620.0	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	0.81	3.02	3.42	3.62	3.68	2.51	4.32	4.74	0.79	5.02	5.02	5.33
Merged-chrX-42188981-1	chrX	42188881	42189081	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	intron (NM_021465, intron 1 of 32)	38280.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	5.25	5.79	6.85	3.22	4.91	4.7	4.65	5.8	5.9	7.03	7.03	1.57
Merged-chr19-44259701-1	chr19	44259601	44259801	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33975.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.85	4.28	1.14	0.8	3.27	5.64	2.99	5.44	0.0	0.0	0.0	2.19
Merged-chr7-28299036-1	chr7	28298936	28299136	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007866, exon 4 of 9)	exon (NM_007866, exon 4 of 9)	2749.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	5.65	3.02	2.85	4.42	10.64	10.35	4.65	6.5	4.33	1.51	2.51	3.45
Merged-chr16-93744145-1	chr16	93744045	93744245	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357118, intron 3 of 35)	intron (NM_001357118, intron 3 of 35)	14046.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	4.04	1.01	6.85	7.24	6.14	4.39	1.99	9.2	4.72	2.51	4.52	0.63
Merged-chr19-45081517-1	chr19	45081417	45081617	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5430.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	4.04	11.82	9.13	1.61	6.95	8.78	1.33	3.95	7.08	7.03	7.03	7.21
Merged-chr11-23667097-1	chr11	23666997	23667197	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028304, intron 1 of 17)	intron (NM_028304, intron 1 of 17)	1121.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.81	2.77	3.42	0.4	5.32	8.15	1.99	3.06	5.9	2.51	3.01	1.25
Merged-chr16-10972612-1	chr16	10972512	10972712	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	20509.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	1.01	1.14	0.8	0.82	2.82	2.99	1.88	1.38	3.51	1.51	0.0
Merged-chr1-171699226-1	chr1	171699126	171699326	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360767, intron 2 of 2)	intron (NM_001360767, intron 2 of 2)	17234.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	3.23	7.29	2.28	1.61	4.91	6.27	1.0	2.64	8.85	12.55	7.54	5.33
Merged-chr11-32286989-3	chr11	32286902	32287102	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033981)	promoter-TSS (NM_001033981)	38.0	NM_001033981	544763.0	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	10.5	8.55	4.56	10.05	3.27	7.84	3.99	4.23	9.05	6.53	8.54	5.01
Merged-chr2-102166849-1	chr2	102166749	102166949	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	19611.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.63	0.25	0.0	3.22	1.23	6.27	1.66	3.81	1.57	4.52	2.51	4.07
Merged-chr17-10664648-1	chr17	10664548	10664748	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	175543.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.81	0.0	1.71	4.83	0.82	5.96	3.32	8.44	2.16	3.51	7.03	3.13
Merged-chr11-86637883-1	chr11	86637783	86637983	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 6 of 11)	intron (NM_001356531, intron 6 of 11)	33392.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	1.62	1.01	7.99	2.01	2.05	4.08	6.31	3.17	7.47	4.02	6.53	7.52
Merged-chr15-39745893-1	chr15	39745793	39745993	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289506)	promoter-TSS (NM_001289506)	-37.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	1.51	0.0	0.0	0.82	0.94	5.98	4.65	2.56	0.0	3.01	0.94
Merged-chr12-36030279-1	chr12	36030179	36030379	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	AT_rich|Low_complexity|Low_complexity	12199.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	1.21	0.0	7.42	2.41	1.64	4.7	3.65	5.64	3.54	1.0	2.51	3.13
Merged-chr16-17812321-1	chr16	17812221	17812421	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15039.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	3.23	0.5	2.85	0.8	6.55	7.21	2.33	4.32	2.75	5.02	8.04	7.21
Merged-chrX-10501922-2	chrX	10501819	10502019	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019634, intron 1 of 7)	MIRb|SINE|MIR	16803.0	NM_019634	21912.0	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	4.85	7.8	12.55	8.85	1.23	5.33	4.98	5.5	6.69	3.51	10.05	6.89
Merged-chr11-32625868-1	chr11	32625768	32625968	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16687.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.23	3.02	3.42	2.01	3.68	5.02	2.66	2.07	9.83	0.0	10.05	2.19
Merged-chr8-79139868-1	chr8	79139768	79139968	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	108715.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	3.63	3.52	0.0	4.42	1.64	4.39	3.32	3.56	13.37	7.03	8.04	3.76
Merged-chr2-93659209-1	chr2	93659109	93659309	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	16775.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	7.67	5.03	3.42	5.23	6.14	9.09	0.0	4.4	8.46	4.02	10.55	5.33
Merged-chr7-143696385-1	chr7	143696285	143696485	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199227, intron 14 of 21)	B3|SINE|B2	-10510.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	5.65	4.78	3.99	0.0	4.5	4.7	0.66	5.16	11.21	8.54	3.52	1.88
Merged-chr9-121458530-1	chr9	121458430	121458630	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357968, intron 12 of 14)	intron (NM_001357968, intron 12 of 14)	37164.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	2.42	4.02	1.71	0.8	1.64	5.33	5.98	4.01	3.93	4.02	11.05	3.45
Merged-chr13-19842938-1	chr13	19842838	19843038	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18681.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.44	4.28	6.28	3.22	2.45	5.64	2.66	5.1	8.65	11.05	3.01	5.01
Merged-chr2-154677924-1	chr2	154677824	154678024	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20898.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	7.67	4.53	1.71	2.41	8.18	5.02	0.33	3.22	3.93	3.51	4.52	2.19
Merged-chr11-98204171-1	chr11	98204071	98204271	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	866.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	2.83	9.06	7.99	2.41	4.91	6.9	2.33	2.69	3.34	7.03	8.54	5.33
Merged-chr1-23062202-1	chr1	23062102	23062302	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40051.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	1.62	4.28	1.14	2.82	6.14	4.7	0.0	4.4	2.36	5.52	4.52	1.25
Merged-chr10-117375973-1	chr10	117375873	117376073	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	CpG	1000.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	10.9	7.29	9.13	11.26	6.55	7.84	12.62	10.37	10.42	7.53	8.54	7.83
Merged-chr9-124068620-1	chr9	124068520	124068720	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33563.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	3.23	3.02	1.14	2.41	10.23	8.47	5.98	5.5	9.24	3.51	10.05	6.58
Merged-chr4-99936958-1	chr4	99936858	99937058	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	7507.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	2.42	2.52	6.28	4.83	6.14	3.14	2.99	5.86	6.69	4.02	6.53	6.27
Merged-chr5-29844695-1	chr5	29844595	29844795	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108759.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	6.86	2.26	8.56	10.05	2.05	5.02	8.64	6.2	4.72	2.01	2.51	1.88
Merged-chr4-56802972-1	chr4	56802872	56803072	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-641.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	7.27	5.28	1.71	0.8	8.59	13.17	4.65	3.67	10.42	8.03	3.01	0.94
Merged-chr1-138843567-1	chr1	138843467	138843667	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010714, intron 2 of 6)	intron (NM_010714, intron 2 of 6)	-1123.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	2.02	2.01	0.57	4.42	4.5	5.33	5.65	4.65	2.75	1.51	3.52	0.63
Merged-chr8-84193821-1	chr8	84193721	84193921	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14697.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	4.44	2.01	0.0	3.62	6.14	3.76	1.66	1.93	8.26	12.55	11.56	5.01
Merged-chr11-104565376-1	chr11	104565276	104565476	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010858, intron 2 of 8)	intron (NM_010858, intron 2 of 8)	-3178.0	NR_130177	100415912.0	Mm.446786	NR_130177		Gm11665	Gm11664	predicted gene 11665	ncRNA	0.0	2.52	0.0	1.61	3.68	6.9	1.66	5.52	5.51	11.05	3.52	10.34
Merged-chr9-72970166-1	chr9	72970066	72970266	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163725, intron 5 of 6)	intron (NM_001163725, intron 5 of 6)	11381.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	5.25	3.77	2.28	1.61	6.95	3.45	3.32	4.57	3.54	10.54	11.56	6.58
Merged-chr2-173660613-1	chr2	173660513	173660713	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024436, intron 1 of 6)	intron (NM_024436, intron 1 of 6)	768.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	2.02	6.29	2.28	2.82	1.23	4.7	2.66	4.93	5.51	3.01	2.51	2.51
Merged-chr3-86987133-1	chr3	86987033	86987233	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007640, exon 2 of 7)	exon (NM_007640, exon 2 of 7)	547.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.63	0.5	6.28	1.61	6.95	3.76	8.3	3.64	3.34	1.0	3.01	1.57
Merged-chr11-23236168-1	chr11	23236068	23236268	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19873.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.4	2.52	1.14	4.02	2.45	4.08	2.99	4.12	6.49	2.01	8.04	0.94
Merged-chr5-113220780-1	chr5	113220680	113220880	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6129.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	6.06	6.04	4.56	1.21	2.86	3.14	6.31	3.45	0.0	0.5	0.0	5.33
Merged-chr11-20729582-1	chr11	20729482	20729682	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	11974.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	3.23	0.75	1.14	2.41	2.45	5.02	1.99	4.85	7.47	3.01	4.02	2.51
Merged-chr13-64361198-1	chr13	64361098	64361298	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_009984)	TTS (NM_009984)	9322.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.85	3.52	1.14	0.8	2.86	3.45	4.32	2.21	3.34	5.52	2.51	2.82
Merged-chr16-30284246-1	chr16	30284146	30284346	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028973)	promoter-TSS (NM_028973)	-992.0	NM_028973	74488.0	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0.81	3.02	1.14	2.41	7.36	6.9	1.33	0.7	2.75	3.51	3.01	5.01
Merged-chr10-17366281-1	chr10	17366181	17366381	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-270499.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	1.21	0.75	3.99	3.62	1.64	0.94	4.98	4.77	4.33	9.54	3.01	2.19
Merged-chr7-80504891-1	chr7	80504791	80504991	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042527, intron 5 of 21)	L3|LINE|CR1	30107.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	1.62	6.29	5.7	2.82	10.64	5.96	3.99	5.3	5.31	10.04	6.53	4.7
Merged-chr11-116096991-1	chr11	116096891	116097091	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-9996.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	4.04	1.51	0.0	1.21	2.86	10.66	0.0	2.38	8.65	2.01	15.58	4.7
Merged-chr12-112860422-1	chr12	112860322	112860522	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	494.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.81	1.51	0.57	3.22	0.0	6.59	8.64	1.68	2.75	2.01	2.01	3.45
Merged-chr14-20848451-1	chr14	20848351	20848551	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11789.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.63	5.03	5.13	2.41	3.27	3.14	5.31	4.49	4.72	5.52	7.03	4.07
Merged-chr7-64267326-1	chr7	64267226	64267426	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039104, intron 26 of 26)	MTEa|LTR|ERVL-MaLR	-17227.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	4.85	3.52	3.42	8.85	5.32	10.98	4.98	5.3	7.28	7.53	4.52	1.88
Merged-chr16-44141652-1	chr16	44141552	44141752	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028108, intron 1 of 4)	ID4_|SINE|ID	1843.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	4.04	2.77	2.28	0.8	2.86	3.76	4.65	3.73	4.52	1.0	5.53	3.45
Merged-chr6-53376609-1	chr6	53376509	53376709	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 3 of 10)	MIRc|SINE|MIR	89306.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.23	1.76	2.28	3.22	9.0	1.25	4.65	4.99	7.28	10.04	6.53	3.76
Merged-chr14-51219312-1	chr14	51219212	51219412	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR25A|LTR|ERVK	15617.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	2.02	1.51	0.0	3.22	5.73	4.39	3.32	5.52	0.0	0.0	4.02	1.25
Merged-chr8-84872812-1	chr8	84872712	84872912	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_027954, exon 2 of 5)	exon (NM_027954, exon 2 of 5)	554.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	10.5	7.8	5.13	3.22	5.32	3.45	7.31	2.72	5.51	10.04	3.01	2.82
Merged-chr18-37751690-1	chr18	37751590	37751790	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033579)	promoter-TSS (NM_033579)	-89.0	NM_033579	93704.0	Mm.247203	NM_033579	ENSMUSG00000104063	Pcdhgb7	-	protocadherin gamma subfamily B, 7	protein-coding	8.08	9.56	2.28	8.04	7.36	5.02	2.66	4.68	3.93	5.02	3.01	2.19
Merged-chr1-172095625-1	chr1	172095525	172095725	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009938, intron 6 of 32)	intron (NM_009938, intron 6 of 32)	-12876.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	2.83	1.76	5.7	0.8	8.59	2.51	1.0	12.06	7.87	4.02	5.53	9.71
Merged-chr18-39374610-1	chr18	39374510	39374710	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175164, exon 23 of 23)	3' UTR (NM_175164, exon 23 of 23)	112635.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.63	3.27	1.14	3.62	2.05	6.27	1.33	4.54	5.51	1.51	4.52	6.89
Merged-chr19-3709287-1	chr19	3709187	3709387	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358257, intron 1 of 3)	intron (NM_001358257, intron 1 of 3)	876.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	3.23	4.02	3.42	4.42	1.23	5.96	1.33	4.32	3.34	4.02	3.52	3.13
Merged-chr1-175639976-1	chr1	175639876	175640076	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133809, intron 4 of 14)	intron (NM_133809, intron 4 of 14)	7783.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	7.27	2.01	0.0	7.24	7.77	3.45	8.64	5.36	6.29	4.52	7.54	4.39
Merged-chr12-34847937-1	chr12	34847837	34848037	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69158.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	7.27	4.78	6.28	6.44	5.73	5.33	1.33	4.63	3.54	6.53	4.02	6.58
Merged-chr1-160044496-1	chr1	160044396	160044596	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_028111, exon 1 of 3)	non-coding (NR_028111, exon 1 of 3)	116.0	NR_028111	67647.0	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	8.88	5.28	5.7	2.41	5.73	1.25	0.66	2.8	4.33	3.01	9.55	6.89
Merged-chr2-26444579-1	chr2	26444479	26444679	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153125, intron 1 of 29)	intron (NM_153125, intron 1 of 29)	637.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	7.27	3.52	8.56	0.0	5.32	3.76	5.31	3.2	9.64	9.04	9.04	4.39
Merged-chr6-94509034-1	chr6	94508934	94509134	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	8720.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.44	4.02	6.85	3.22	6.95	4.39	3.65	4.79	3.34	2.01	9.04	3.76
Merged-chr11-116022624-2	chr11	116022478	116022678	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008211, exon 4 of 4)	3' UTR (NM_008211, exon 4 of 4)	1926.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	4.04	5.03	1.14	2.41	5.32	6.9	2.33	1.51	6.49	13.05	8.54	1.57
Merged-chr2-156780869-1	chr2	156780769	156780969	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172118, intron 3 of 3)	intron (NM_172118, intron 3 of 3)	5405.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.4	3.52	1.71	0.8	4.5	4.39	1.99	6.31	3.74	1.51	8.04	5.01
Merged-chr3-103737976-1	chr3	103737876	103738076	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	25.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.63	0.75	0.0	2.01	3.27	2.51	2.99	7.54	10.23	4.52	6.03	6.58
Merged-chr6-120493506-1	chr6	120493406	120493606	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	301.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	3.23	2.01	3.99	0.8	6.95	4.7	6.98	0.11	3.93	4.02	2.01	2.51
Merged-chr18-60764032-1	chr18	60763932	60764132	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10564.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	4.04	1.01	1.71	1.21	3.68	4.7	3.65	4.43	5.9	4.02	3.01	7.52
Merged-chr8-111145080-1	chr8	111144980	111145180	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040363, intron 1 of 3)	intron (NR_040363, intron 1 of 3)	418.0	NR_040363	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	3.23	8.55	0.0	9.65	3.27	5.33	7.31	2.89	8.46	4.52	14.07	5.64
Merged-chr8-119112870-1	chr8	119112770	119112970	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-231668.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	3.02	1.14	0.0	3.27	3.14	3.32	6.45	4.13	1.0	5.53	1.57
Merged-chr14-33195187-1	chr14	33195087	33195287	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20D|LTR|ERVK	-10121.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.63	3.52	5.13	5.63	7.77	7.21	2.66	4.68	4.92	8.03	2.51	3.45
Merged-chr5-36497241-1	chr5	36497141	36497341	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 12 of 13)	intron (NM_133910, intron 12 of 13)	12653.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	1.21	2.01	3.99	5.23	4.5	2.51	2.99	6.87	1.77	2.01	2.51	5.64
Merged-chr10-128008426-1	chr10	128008326	128008526	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013786)	promoter-TSS (NM_013786)	-815.0	NM_001359377	27400.0	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	5.65	4.53	6.85	4.83	4.91	9.41	4.98	4.65	6.29	6.53	1.51	5.64
Merged-chr14-26565094-1	chr14	26564994	26565194	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8764.0	NM_001285467	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	2.42	7.04	1.14	0.0	1.23	7.21	2.33	0.45	7.47	2.01	7.54	1.25
Merged-chr6-33501290-1	chr6	33501190	33501390	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	252162.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.63	0.75	4.56	4.02	6.14	1.25	2.66	6.0	6.1	12.05	5.02	6.58
Merged-chr10-80398008-1	chr10	80397908	80398108	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001306143, intron 1 of 6)	intron (NM_001306143, intron 1 of 6)	1523.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.81	1.01	2.28	1.61	0.41	1.25	1.0	2.8	6.1	3.01	1.0	3.76
Merged-chr2-69707161-1	chr2	69707061	69707261	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177244, intron 4 of 13)	intron (NM_177244, intron 4 of 13)	5445.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	0.81	1.01	0.0	1.61	1.23	0.0	0.0	0.0	9.44	3.51	9.04	5.64
Merged-chr4-132345125-1	chr4	132345025	132345225	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133878, intron 1 of 9)	CpG	625.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	8.08	6.54	0.0	1.21	8.59	3.45	1.99	2.58	10.82	6.03	4.52	2.19
Merged-chr15-80083979-1	chr15	80083879	80084079	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-573.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	2.83	5.03	5.13	3.22	4.09	3.14	4.98	1.88	9.24	3.01	1.51	5.95
Merged-chr3-87365353-2	chr3	87365252	87365452	+	578.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	7471.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.85	5.53	5.7	6.03	9.0	5.33	3.65	4.65	12.78	10.54	8.54	6.27
Merged-chr1-154031075-2	chr1	154030972	154031172	+	578.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131143.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	10.5	5.53	9.7	5.63	8.18	5.96	4.32	4.07	10.62	8.03	6.03	4.07
Merged-chr13-101847374-1	chr13	101847274	101847474	+	578.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79157.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.02	2.01	0.57	1.61	6.95	6.27	4.65	4.71	1.18	2.01	1.0	0.94
Merged-chr5-36546674-1	chr5	36546574	36546774	+	578.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-16051.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.02	3.02	2.28	3.22	6.14	5.64	3.32	4.74	0.0	0.0	0.0	0.31
Merged-chr3-20520963-1	chr3	20520863	20521063	+	578.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-153786.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	4.04	6.29	4.56	12.87	5.32	5.64	2.99	5.21	3.54	3.01	4.52	2.51
Merged-chr2-91088033-2	chr2	91087925	91088125	+	578.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8653.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	6.86	2.52	5.13	2.41	5.73	6.59	4.32	4.79	6.69	11.05	11.05	6.58
Merged-chr4-55342793-2	chr4	55342690	55342890	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7252.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.81	1.76	3.42	1.61	3.27	4.39	3.99	4.88	7.28	7.53	8.54	1.57
Merged-chr5-72831165-1	chr5	72831065	72831265	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	HAL1|LINE|L1	37283.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	1.62	4.02	3.42	4.83	7.36	5.64	6.64	7.26	6.88	1.0	5.02	3.45
Merged-chr4-63216552-1	chr4	63216452	63216652	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	1140.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.4	7.8	3.42	0.4	2.05	9.72	4.65	4.88	12.0	16.07	8.04	2.82
Merged-chr19-10678718-1	chr19	10678618	10678818	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021453)	promoter-TSS (NM_021453)	-647.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	4.04	4.02	0.0	2.82	7.77	7.53	3.65	6.2	6.1	2.51	2.51	3.13
Merged-chr14-70554422-1	chr14	70554322	70554522	+	578.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021877, intron 1 of 19)	CpG	366.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	7.27	6.54	11.98	1.61	4.5	6.27	4.98	2.8	1.77	3.51	2.01	4.7
Merged-chr1-143731123-1	chr1	143731023	143731223	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-8226.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	3.23	4.53	2.28	6.44	5.73	4.7	2.66	5.27	8.46	7.53	6.53	4.07
Merged-chr11-98202184-1	chr11	98202084	98202284	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1121.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	5.65	3.52	0.0	6.03	6.95	5.64	1.99	5.38	7.67	4.02	6.03	3.76
Merged-chr13-36203230-1	chr13	36203130	36203330	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039189, intron 1 of 5)	B4A|SINE|B4	85587.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.63	8.05	5.13	8.04	9.0	8.78	2.33	5.24	3.93	3.51	3.52	5.33
Merged-chr9-71834934-2	chr9	71834826	71835026	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61170.0	NM_001253864	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	9.69	2.52	7.42	6.84	10.64	6.27	2.66	5.36	3.34	8.03	11.05	5.01
Merged-chr3-88087922-1	chr3	88087822	88088022	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033484, intron 4 of 37)	B2_Mm2|SINE|B2	5871.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	2.42	4.78	3.42	4.42	7.36	8.15	9.3	4.51	5.11	3.51	7.03	2.82
Merged-chr3-157629951-2	chr3	157629863	157630063	+	578.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011196, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	63071.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	8.88	5.03	10.27	7.64	4.91	2.2	5.31	4.99	1.18	1.0	3.52	6.27
Merged-chr15-84842676-2	chr15	84842585	84842785	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	12414.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	5.65	3.77	1.14	4.02	2.86	5.64	2.99	5.16	2.75	4.52	19.09	7.21
Merged-chr11-75514526-1	chr11	75514426	75514626	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004157, intron 3 of 10)	intron (NM_001004157, intron 3 of 10)	985.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	8.08	8.3	0.0	2.41	6.55	8.47	1.33	4.49	5.31	11.05	6.53	3.76
Merged-chr11-44439315-1	chr11	44439215	44439415	+	578.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31233.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	2.42	0.25	0.0	0.0	0.41	0.0	0.0	0.03	9.05	7.53	13.57	9.08
Merged-chr2-73584795-3	chr2	73584684	73584884	+	578.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153820)	promoter-TSS (NR_153820)	-76.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	7.27	9.31	3.42	8.04	13.91	8.15	7.97	5.27	13.77	8.54	9.55	5.33
Merged-chr4-135921565-1	chr4	135921465	135921665	+	578.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	839.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	4.04	2.26	7.99	4.83	11.45	4.7	4.98	5.66	7.08	3.01	7.54	6.27
Merged-chrX-77446920-1	chrX	77446820	77447020	+	578.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64307.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	2.83	4.78	6.28	4.83	6.55	5.64	5.98	4.12	7.08	4.02	10.05	1.25
Merged-chr4-128698720-3	chr4	128698616	128698816	+	578.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9978.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.06	5.79	7.99	10.46	3.68	5.96	2.66	4.57	7.08	9.04	10.05	6.58
Merged-chr7-143748591-1	chr7	143748491	143748691	+	578.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6628.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	12.52	1.76	8.56	2.82	4.5	7.21	4.65	4.49	6.29	7.03	5.53	4.07
Merged-chr11-87591268-2	chr11	87591188	87591388	+	578.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-878.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	6.86	8.05	5.7	0.8	3.27	8.78	7.64	4.43	4.72	7.03	5.02	7.83
Merged-chr19-37502697-2	chr19	37502614	37502814	+	578.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	37460.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	4.85	3.52	3.42	5.63	1.23	7.21	7.64	4.29	7.47	5.52	9.55	3.13
Merged-chr4-106988167-2	chr4	106988061	106988261	+	578.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	64976.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	14.94	4.78	10.27	6.44	7.36	5.96	3.32	12.45	10.82	3.01	15.07	6.89
Merged-chr13-34963870-2	chr13	34963763	34963963	+	578.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026947)	promoter-TSS (NM_026947)	-54.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	2.83	6.04	7.42	10.86	4.91	6.59	7.97	2.55	6.1	3.51	2.51	5.95
Merged-chr19-41483624-1	chr19	41483524	41483724	+	578.166687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-41628.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	8.48	7.04	8.56	8.85	6.14	3.76	7.64	2.52	6.49	2.51	5.02	5.64
Merged-chr4-6369635-1	chr4	6369535	6369735	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3955.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.42	3.02	5.13	5.23	6.14	2.51	3.99	5.02	6.1	7.03	7.54	5.33
Merged-chr7-109439241-1	chr7	109439141	109439341	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054103)	promoter-TSS (NM_054103)	-188.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.81	6.04	3.42	1.61	2.45	5.02	1.0	2.19	6.1	1.0	6.03	2.51
Merged-chr18-58564564-1	chr18	58564464	58564664	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	8324.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	2.42	4.53	2.28	3.22	3.27	5.64	6.31	6.62	6.49	4.02	3.52	2.82
Merged-chr8-80878976-1	chr8	80878876	80879076	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	1503.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	2.83	4.28	9.7	8.85	5.73	1.88	5.31	3.67	2.75	3.01	4.52	6.89
Merged-chr3-96764694-1	chr3	96764594	96764794	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	B1F2|SINE|Alu	37083.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	1.21	2.77	11.41	4.83	3.27	2.2	0.33	2.02	5.11	3.51	7.03	4.7
Merged-chr1-65054700-1	chr1	65054600	65054800	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-3537.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.0	2.52	3.42	3.62	4.91	3.76	7.64	5.05	8.85	8.03	4.02	10.02
Merged-chr1-91095143-1	chr1	91095043	91095243	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41699.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	1.26	0.57	1.61	3.68	6.9	2.33	5.33	1.18	3.51	4.52	3.13
Merged-chr13-97441903-1	chr13	97441803	97442003	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	6933.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	6.46	4.02	3.99	4.83	2.05	9.41	1.66	2.72	5.51	4.52	2.01	3.76
Merged-chr17-25832184-1	chr17	25832084	25832284	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_037243)	promoter-TSS (NR_037243)	-756.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	4.04	3.77	4.56	6.03	2.45	4.39	3.32	2.3	6.1	4.02	4.52	4.39
Merged-chr13-14022074-1	chr13	14021974	14022174	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178337, intron 3 of 16)	MMVL30-int|LTR|ERV1	17564.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	4.44	3.52	6.28	9.65	4.91	5.64	2.99	5.1	4.92	2.51	10.05	3.13
Merged-chr11-108041914-1	chr11	108041814	108042014	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	45066.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	1.62	0.5	0.0	2.41	6.14	1.25	2.33	7.01	2.56	0.0	0.5	1.25
Merged-chr11-87428014-1	chr11	87427914	87428114	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 1 of 30)	PB1D7|SINE|Alu	423.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.06	3.27	3.99	5.63	1.64	5.33	2.66	0.08	1.97	5.02	3.01	5.95
Merged-chr7-123276802-1	chr7	123276702	123276902	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	61936.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	7.67	7.55	6.28	3.22	0.41	0.94	2.66	0.03	3.54	3.51	4.02	5.01
Merged-chr2-151748477-1	chr2	151748377	151748577	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_138568, exon 3 of 3)	non-coding (NR_138568, exon 3 of 3)	2988.0	NR_138568	75283.0	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	2.83	3.52	1.14	7.64	2.86	4.39	4.65	6.22	4.72	9.54	3.52	12.22
Merged-chr1-153492764-1	chr1	153492664	153492864	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5104.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.23	2.01	2.85	2.41	11.86	3.76	4.65	5.33	3.15	3.51	2.51	3.76
Merged-chr1-79761103-3	chr1	79760964	79761164	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	705.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	3.63	6.04	2.85	1.61	6.55	3.14	7.31	3.59	3.15	4.02	4.52	4.7
Merged-chr9-66624528-1	chr9	66624428	66624628	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31413.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.65	3.52	6.28	0.8	3.27	5.64	3.32	4.77	9.05	11.55	6.53	4.7
Merged-chr5-9015603-1	chr5	9015503	9015703	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18457.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	2.02	0.5	0.0	0.8	8.18	6.9	2.66	3.98	7.08	1.0	4.52	3.13
Merged-chr1-23397788-1	chr1	23397688	23397888	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14613.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.81	1.01	9.13	7.24	6.14	2.82	3.32	9.56	2.95	2.51	3.01	3.45
Merged-chr12-99306020-1	chr12	99305920	99306120	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	RLTR20A4|LTR|ERVK	-143212.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	6.06	1.76	3.99	5.63	3.68	3.76	4.65	4.6	2.95	1.51	0.5	0.94
Merged-chr10-59227912-1	chr10	59227812	59228012	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	5990.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.06	6.29	7.99	3.22	5.32	7.84	1.66	0.06	3.54	4.02	5.02	0.0
Merged-chr11-52066017-1	chr11	52065917	52066117	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-32807.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	1.62	3.02	1.14	4.83	4.91	5.33	8.64	3.62	11.01	4.52	11.56	3.13
Merged-chr13-110905655-1	chr13	110905555	110905755	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131193, intron 3 of 4)	L1MA4|LINE|L1	-1809.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	5.65	1.01	2.28	4.02	6.55	3.76	1.33	9.95	7.08	6.53	10.05	5.33
Merged-chr12-3903642-1	chr12	3903542	3903742	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	11898.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.42	2.01	1.14	10.05	6.14	2.2	4.98	10.71	5.31	7.53	4.52	7.83
Merged-chr17-67261150-1	chr17	67261050	67261250	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	L1MA5|LINE|L1	93309.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.62	2.52	1.14	0.0	0.82	3.14	4.65	4.01	4.33	8.54	5.53	3.45
Merged-chr14-27029927-2	chr14	27029825	27030025	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-9076.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	2.42	5.03	2.28	6.03	6.55	4.7	7.97	4.54	7.08	13.56	12.06	5.01
Merged-chr4-85374248-1	chr4	85374148	85374348	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019535, intron 3 of 8)	intron (NM_019535, intron 3 of 8)	168792.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	1.62	1.01	0.0	0.0	0.0	0.31	0.33	0.03	7.47	8.03	11.05	4.39
Merged-chrX-164004985-1	chrX	164004885	164005085	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181315, intron 2 of 7)	MER20|DNA|hAT-Charlie	23025.0	NM_181315	56078.0	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	8.08	3.77	6.85	5.23	11.45	11.6	2.33	4.71	7.08	6.53	7.54	2.19
Merged-chr5-123024740-1	chr5	123024640	123024840	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	9666.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	6.06	4.53	11.41	1.61	3.27	5.02	2.66	2.21	9.83	6.53	5.53	6.27
Merged-chr11-3450224-1	chr11	3450124	3450324	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145355, intron 1 of 7)	intron (NM_145355, intron 1 of 7)	-2213.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.81	2.01	3.99	0.8	3.27	3.45	1.33	1.15	3.15	0.5	2.51	1.57
Merged-chr13-49326885-1	chr13	49326785	49326985	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14664.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	8.08	5.28	1.14	2.82	2.86	3.76	1.33	2.52	5.51	7.53	7.03	5.64
Merged-chr5-125268263-1	chr5	125268163	125268363	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72831.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.27	2.26	1.14	1.21	4.5	4.7	0.66	6.45	4.13	2.01	4.02	10.65
Merged-chrX-19112925-1	chrX	19112825	19113025	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33463.0	NR_029806	723827.0		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	0.81	0.0	0.0	2.01	5.73	1.25	1.99	5.05	0.0	3.01	1.0	1.25
Merged-chr8-56054022-1	chr8	56053922	56054122	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 4 of 9)	intron (NM_080438, intron 4 of 9)	113197.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.23	2.77	0.0	6.03	2.45	0.63	3.99	8.52	2.16	13.56	12.06	3.13
Merged-chr19-6302688-1	chr19	6302588	6302788	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3769.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	9.29	6.04	5.13	1.61	2.45	8.15	4.65	4.23	3.74	12.05	4.52	0.94
Merged-chr12-88467008-1	chr12	88466908	88467108	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-89685.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.81	2.01	1.14	0.0	3.27	5.64	6.98	4.07	2.36	3.01	2.01	0.94
Merged-chr2-27756278-1	chr2	27756178	27756378	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011305, exon 8 of 10)	exon (NM_011305, exon 8 of 10)	45695.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.83	4.28	0.57	0.8	0.41	0.94	2.99	4.26	4.33	0.5	1.51	1.57
Merged-chr14-11328356-1	chr14	11328256	11328456	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	45879.0	NR_105811	102466641.0		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0.0	1.76	0.0	0.0	0.0	0.63	3.99	4.4	7.08	5.52	2.51	9.4
Merged-chr18-20742556-1	chr18	20742456	20742656	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3848.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	2.83	6.54	0.0	0.0	2.45	10.35	1.99	4.63	10.82	2.01	7.03	1.25
Merged-chr7-110004648-1	chr7	110004548	110004748	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037959, intron 1 of 2)	MIR|SINE|MIR	1998.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	3.23	1.51	3.42	5.63	7.77	5.64	3.99	10.99	7.47	5.52	3.01	1.88
Merged-chr14-30460041-2	chr14	30459951	30460151	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131095, intron 2 of 3)	intron (NR_131095, intron 2 of 3)	2015.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	8.88	3.52	1.14	6.84	4.91	4.7	2.99	6.59	8.26	9.04	6.53	3.45
Merged-chr2-17081516-1	chr2	17081416	17081616	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER3D-int|LTR|ERVK	-67790.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.0	3.02	2.28	3.22	1.64	0.31	4.65	6.42	0.39	5.02	0.0	0.0
Merged-chr7-19747008-1	chr7	19746908	19747108	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008990, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	2565.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	7.67	5.79	7.42	1.21	3.27	3.76	4.65	3.39	3.54	4.52	7.03	6.89
Merged-chr3-102961379-1	chr3	102961279	102961479	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201622, intron 1 of 10)	intron (NM_201622, intron 1 of 10)	2754.0	NM_201619	381463.0	Mm.331269	NM_198658	ENSMUSG00000048938	Nr1h5	Fxrb	nuclear receptor subfamily 1, group H, member 5	protein-coding	6.06	2.01	5.7	2.82	1.23	6.9	5.65	3.17	1.77	2.01	0.0	0.94
Merged-chr14-70078447-1	chr14	70078347	70078547	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	652.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.86	2.52	2.85	6.44	3.68	5.33	5.31	1.4	8.46	5.02	9.04	4.39
Merged-chr7-88034207-1	chr7	88034107	88034307	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 6 of 9)	intron (NM_001081414, intron 6 of 9)	-243878.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.81	0.5	2.28	1.21	3.27	6.27	0.33	4.04	2.75	2.51	3.52	0.31
Merged-chr15-97672411-1	chr15	97672311	97672511	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33411.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	8.08	5.03	0.0	2.01	9.82	2.82	3.99	6.11	7.67	5.02	4.52	6.27
Merged-chr17-28722545-1	chr17	28722445	28722645	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	29977.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	1.62	1.76	6.85	2.41	4.5	6.27	1.0	4.79	3.34	0.0	1.51	1.88
Merged-chr11-116146865-1	chr11	116146765	116146965	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172571, intron 24 of 30)	intron (NM_172571, intron 24 of 30)	-7997.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.25	1.01	1.71	3.62	7.77	10.66	1.33	2.8	7.87	1.51	2.01	10.34
Merged-chr4-59615187-1	chr4	59615087	59615287	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301367, intron 11 of 11)	intron (NM_001301367, intron 11 of 11)	-11024.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	8.08	2.52	1.14	3.22	4.5	8.15	1.33	3.76	6.88	1.51	5.53	2.51
Merged-chrX-164269503-1	chrX	164269403	164269603	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027153)	promoter-TSS (NM_027153)	72.0	NM_027153	69656.0	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding	0.81	1.26	0.0	0.0	4.09	0.94	4.98	4.74	1.77	2.01	0.0	0.94
Merged-chr11-44435920-1	chr11	44435820	44436020	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34628.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	1.62	2.52	9.13	8.04	5.73	3.45	3.99	3.45	9.24	6.53	10.05	0.63
Merged-chr17-26463732-1	chr17	26463632	26463832	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	44740.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.02	1.51	0.57	2.41	7.36	1.25	6.31	4.74	2.75	0.0	7.03	3.45
Merged-chr1-59472302-1	chr1	59472202	59472402	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9845.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	1.62	3.77	3.99	4.02	6.55	0.0	3.99	1.15	6.69	3.51	7.54	4.07
Merged-chr3-51914073-1	chr3	51913973	51914173	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	190933.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.65	1.51	2.28	8.85	5.73	7.21	5.31	4.32	1.57	2.51	4.02	2.19
Merged-chr6-87524999-1	chr6	87524899	87525099	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	8260.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.63	3.52	3.99	2.82	9.82	5.33	2.33	5.69	6.29	1.0	5.53	16.6
Merged-chr2-38944167-1	chr2	38944067	38944267	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172854, intron 2 of 7)	RLTR17|LTR|ERVK	12187.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	3.63	4.02	1.14	0.8	9.0	3.14	8.97	4.07	2.56	12.55	5.02	2.82
Merged-chrX-167242658-1	chrX	167242558	167242758	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001313761, exon 3 of 3)	3' UTR (NM_001313761, exon 3 of 3)	21671.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	4.04	0.25	1.71	2.01	8.18	5.02	3.32	5.66	0.79	2.01	1.51	1.57
Merged-chr11-54264766-1	chr11	54264666	54264866	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010556)	TTS (NM_010556)	2513.0	NM_010556	16187.0	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	3.23	3.02	2.85	1.61	6.95	5.33	1.99	3.93	7.87	4.52	3.01	6.58
Merged-chr5-64999321-1	chr5	64999221	64999421	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026667, intron 3 of 13)	intron (NM_026667, intron 3 of 13)	29003.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	1.62	3.52	6.85	2.82	8.18	6.9	2.66	5.38	6.1	14.06	1.51	1.57
Merged-chr5-65390943-1	chr5	65390843	65391043	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001310612)	promoter-TSS (NM_001310612)	488.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	10.09	7.55	6.85	11.26	3.27	11.6	8.97	4.01	9.64	7.03	14.07	15.04
Merged-chr2-167055367-1	chr2	167055267	167055467	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7567.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	3.63	8.3	6.28	4.02	6.14	2.51	4.65	4.15	6.69	7.53	4.02	7.52
Merged-chr3-142640274-1	chr3	142640174	142640374	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-16328.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	4.04	6.79	4.56	1.61	2.86	5.02	1.66	6.84	4.72	5.02	6.53	1.88
Merged-chr6-72431369-1	chr6	72431269	72431469	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_019802)	TTS (NM_019802)	-7314.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	5.25	2.26	2.28	0.8	2.86	6.59	1.99	1.23	2.36	5.02	0.0	0.31
Merged-chr15-90084449-1	chr15	90084349	90084549	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-139862.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.0	1.26	0.57	4.02	1.64	3.76	4.32	4.35	4.33	8.03	5.02	3.13
Merged-chr17-87140924-1	chr17	87140824	87141024	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33245.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.23	2.52	3.99	5.23	5.73	6.27	3.65	2.97	1.97	3.01	1.51	1.57
Merged-chr19-11051186-1	chr19	11051086	11051286	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	-620.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.25	7.55	2.85	0.0	1.64	7.21	3.99	2.94	4.13	9.04	3.52	5.95
Merged-chr16-91314297-1	chr16	91314197	91314397	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44528.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	4.85	4.02	2.85	11.26	9.0	10.03	3.99	4.85	6.69	4.52	7.54	4.07
Merged-chr4-154997991-1	chr4	154997891	154998091	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356470, intron 10 of 22)	RLTR28|LTR|ERVL	12993.0	NM_175556	269615.0	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	6.06	2.52	1.14	8.04	7.36	2.51	1.99	5.16	9.64	2.01	2.51	7.52
Merged-chr6-38691251-1	chr6	38691151	38691351	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28182.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.86	1.01	4.56	1.21	1.23	1.57	6.64	4.6	3.15	1.51	5.02	2.82
Merged-chr4-32189833-1	chr4	32189733	32189933	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	225726.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.85	3.52	3.42	1.61	5.73	3.45	1.33	5.19	3.34	4.52	8.04	1.25
Merged-chr2-154703015-2	chr2	154702932	154703132	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46006.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	7.27	1.76	4.56	1.61	8.59	8.47	5.31	4.91	9.05	11.55	4.52	9.4
Merged-chr6-88306536-1	chr6	88306436	88306636	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84268.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	3.23	3.52	3.42	15.28	3.68	4.08	5.31	4.77	4.72	1.0	6.03	3.45
Merged-chr13-91990959-1	chr13	91990859	91991059	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2917.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.0	0.5	0.0	0.0	1.64	0.63	2.66	3.28	0.79	0.0	0.0	2.51
Merged-chr3-137975667-1	chr3	137975567	137975767	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	5882.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.25	6.54	7.42	2.41	3.68	6.27	2.99	4.15	3.74	3.01	3.52	6.89
Merged-chr14-20655893-1	chr14	20655793	20655993	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021508, intron 1 of 5)	intron (NM_021508, intron 1 of 5)	647.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	2.42	2.01	2.28	2.01	3.68	4.08	3.65	2.89	4.52	5.02	5.02	1.57
Merged-chr13-75709822-1	chr13	75709722	75709922	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	2338.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	1.62	1.51	0.57	0.8	5.32	3.14	3.32	2.16	1.77	4.52	1.51	4.07
Merged-chr1-153493516-2	chr1	153493413	153493613	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-5853.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.23	2.52	2.28	1.61	6.55	0.63	2.66	5.86	6.69	9.04	4.52	10.65
Merged-chr2-151876356-1	chr2	151876256	151876456	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33429.0	NM_001040689	228770.0	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	4.44	5.03	1.14	0.8	1.23	6.9	1.33	3.59	1.97	4.52	3.52	9.08
Merged-chr14-65147155-1	chr14	65147055	65147255	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-49049.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	2.42	3.27	3.42	1.61	6.14	3.76	5.98	1.09	7.47	6.53	7.54	8.77
Merged-chr12-35055334-1	chr12	35055234	35055434	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	8145.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.42	1.51	0.0	4.02	5.73	5.02	1.33	4.77	5.51	4.02	6.03	2.19
Merged-chr18-58583276-1	chr18	58583176	58583376	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	27036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	3.63	5.03	2.85	8.45	5.73	5.02	10.3	2.44	4.72	1.0	3.52	2.19
Merged-chr18-77758543-1	chr18	77758443	77758643	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357531, intron 9 of 10)	intron (NM_001357531, intron 9 of 10)	9256.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.81	1.51	3.99	0.0	0.0	0.0	1.33	2.44	8.26	5.52	11.56	7.52
Merged-chr10-51489236-1	chr10	51489136	51489336	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1662.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	2.02	2.01	0.57	1.61	2.05	9.72	3.32	0.39	0.2	3.01	2.51	4.07
Merged-chr5-115569324-1	chr5	115569224	115569424	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	4061.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	4.04	2.01	4.56	1.61	8.59	8.78	4.98	2.41	1.18	0.5	0.0	1.88
Merged-chr7-58742874-1	chr7	58742774	58742974	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009728, intron 2 of 20)	MTEb|LTR|ERVL-MaLR	84672.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	5.25	7.55	15.4	5.63	2.45	3.76	3.99	7.51	6.88	6.03	10.55	6.89
Merged-chr8-83729571-1	chr8	83729471	83729671	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163029, intron 4 of 17)	intron (NM_001163029, intron 4 of 17)	-5587.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	7.67	4.53	1.71	6.03	4.5	9.09	4.98	1.93	3.15	4.52	2.01	5.33
Merged-chr9-105779146-1	chr9	105779046	105779246	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172927, intron 6 of 7)	intron (NM_172927, intron 6 of 7)	30502.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	1.62	0.5	1.14	1.61	3.27	2.51	5.98	5.1	0.39	0.0	0.0	0.0
Merged-chr9-3002727-3	chr9	3002641	3002841	+	577.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	36002.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.06	12.32	9.13	6.44	11.45	10.35	7.97	0.0	9.64	9.54	13.06	11.59
Merged-chr13-64403654-2	chr13	64403528	64403728	+	577.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-28925.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.83	1.51	2.28	6.44	5.73	3.76	4.98	5.16	9.64	5.52	6.03	4.07
Merged-chr9-111119841-1	chr9	111119741	111119941	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	1730.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	6.86	1.01	3.42	0.8	7.77	8.15	8.3	3.5	5.31	8.54	7.03	5.64
Merged-chr4-148171001-1	chr4	148170901	148171101	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10333.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	1.21	2.77	1.14	0.8	7.36	4.7	6.31	3.81	2.75	4.52	4.52	3.45
Merged-chr17-47039031-3	chr17	47038932	47039132	+	577.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28500.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	7.67	5.53	3.99	4.83	4.5	13.17	1.33	5.47	6.49	4.02	12.56	11.28
Merged-chr6-48433625-1	chr6	48433525	48433725	+	577.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	11465.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	1.62	0.0	0.0	0.0	0.0	0.0	0.0	0.0	7.67	7.03	10.55	8.14
Merged-chr6-29773241-1	chr6	29773141	29773341	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	4798.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.65	3.77	3.42	6.03	7.36	5.02	5.98	7.65	9.24	5.52	5.53	5.95
Merged-chr15-102108141-1	chr15	102108041	102108241	+	577.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355636, intron 10 of 28)	intron (NM_001355636, intron 10 of 28)	5207.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	11.71	0.5	8.56	4.83	7.77	7.21	1.33	2.21	9.05	8.54	4.02	5.64
Merged-chr5-144770410-1	chr5	144770310	144770510	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	1618.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	9.69	5.79	0.0	2.01	6.55	5.64	1.0	5.41	6.69	8.03	4.52	5.33
Merged-chr15-78772523-2	chr15	78772453	78772653	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	892.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.04	4.53	2.28	6.44	5.32	1.57	4.32	4.51	5.9	5.52	7.03	5.64
Merged-chr2-60216638-1	chr2	60216538	60216738	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	6702.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	3.63	2.01	5.7	9.65	3.68	0.94	3.99	3.56	4.33	0.0	7.03	1.25
Merged-chr5-107726066-1	chr5	107725966	107726166	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001267621)	promoter-TSS (NM_001267621)	-261.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	5.25	2.77	2.28	3.22	1.64	5.02	4.98	5.1	7.28	3.51	4.02	6.89
Merged-chr4-46458664-2	chr4	46458577	46458777	+	577.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	intron (NM_130889, intron 1 of 6)	7751.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	8.88	3.77	11.41	5.63	3.27	8.15	3.32	5.52	3.74	6.53	6.03	3.13
Merged-chr12-80366703-1	chr12	80366603	80366803	+	577.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177267, intron 6 of 8)	L2a|LINE|L2	24974.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	1.62	2.01	2.28	0.0	0.82	0.0	1.33	0.87	8.46	10.04	8.04	2.82
Merged-chr9-56068121-1	chr9	56068021	56068221	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21855.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.04	2.77	1.14	4.02	5.73	7.84	2.99	4.57	8.26	9.04	5.02	5.01
Merged-chr11-50262220-1	chr11	50262120	50262320	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175334, intron 3 of 4)	RSINE1|SINE|B4	-23688.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	6.46	1.26	1.71	0.8	8.18	6.27	1.99	6.03	6.69	6.03	9.55	3.76
Merged-chr8-111875960-1	chr8	111875860	111876060	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025781, intron 1 of 2)	intron (NM_025781, intron 1 of 2)	715.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	2.42	4.02	5.7	2.41	7.36	5.02	2.66	5.38	7.08	5.02	2.51	3.76
Merged-chr6-85117938-2	chr6	85117820	85118020	+	577.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034902, intron 2 of 2)	intron (NM_001034902, intron 2 of 2)	8174.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	8.48	6.54	3.99	6.84	4.5	3.76	5.31	5.21	2.75	4.02	4.52	2.19
Merged-chr5-8996246-1	chr5	8996146	8996346	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023733, intron 2 of 17)	intron (NM_023733, intron 2 of 17)	900.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	2.42	1.26	2.28	1.21	3.27	1.25	4.32	5.02	5.51	1.0	2.01	1.57
Merged-chr7-59232181-1	chr7	59232081	59232281	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	3431.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.0	5.03	2.28	7.24	5.73	5.96	6.31	4.54	2.16	4.02	8.04	2.51
Merged-chr7-111026661-2	chr7	111026572	111026772	+	577.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2279.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	10.9	5.03	5.13	0.4	2.45	5.96	3.99	2.19	7.87	7.03	6.53	9.4
Merged-chr8-124827588-1	chr8	124827488	124827688	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198632, intron 8 of 9)	intron (NM_198632, intron 8 of 9)	34569.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	1.62	2.01	5.7	5.23	6.95	6.9	1.99	4.32	5.31	3.01	5.02	2.82
Merged-chr8-6114686-1	chr8	6114586	6114786	+	577.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1009399.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	6.06	3.52	5.7	4.02	0.0	0.0	0.0	0.93	10.23	13.05	9.55	7.21
Merged-chr5-123973608-1	chr5	123973508	123973708	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	-20.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	6.06	6.54	0.57	7.64	4.5	8.47	5.98	3.25	0.98	4.52	5.53	3.76
Merged-chr17-32951660-1	chr17	32951560	32951760	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033585, exon 3 of 3)	non-coding (NR_033585, exon 3 of 3)	-4299.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	3.23	5.79	0.57	2.01	8.59	6.59	3.32	4.49	4.72	8.54	9.04	4.7
Merged-chr8-33517811-1	chr8	33517711	33517911	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33500.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.81	3.27	0.0	3.22	0.82	6.27	4.65	3.73	5.9	2.01	5.53	2.82
Merged-chr4-123565256-1	chr4	123565156	123565356	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51164.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	5.25	8.55	6.85	6.44	5.73	6.9	2.99	7.09	6.29	9.04	10.05	4.39
Merged-chr10-99577482-2	chr10	99577389	99577589	+	577.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31682.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.46	1.01	3.99	4.02	8.18	5.96	3.99	5.33	10.82	7.03	11.56	5.01
Merged-chr7-106240703-1	chr7	106240603	106240803	+	577.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13B2|LTR|ERVK	-25363.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	1.21	2.26	11.98	4.42	7.36	9.41	3.65	5.02	6.1	5.52	5.53	5.95
Merged-chr11-5886447-1	chr11	5886347	5886547	+	577.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8191.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	10.5	2.77	4.56	4.83	5.73	5.02	3.65	4.15	5.7	13.05	6.53	1.88
Merged-chr18-44718689-1	chr18	44718589	44718789	+	577.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56423.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	1.33	0.03	8.85	10.54	13.57	1.88
Merged-chr14-72532856-1	chr14	72532756	72532956	+	577.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	177147.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.44	7.29	7.42	3.22	6.14	8.47	5.98	4.15	3.34	5.02	2.01	2.51
Merged-chr5-65846772-1	chr5	65846672	65846872	+	577.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16797.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	8.08	3.02	1.71	8.45	4.91	1.57	1.99	3.64	10.82	11.05	10.05	8.46
Merged-chr2-102791926-1	chr2	102791826	102792026	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45166.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	5.25	1.76	0.57	5.23	1.23	3.76	3.99	5.8	6.1	3.01	10.05	3.45
Merged-chr1-40330648-1	chr1	40330548	40330748	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356478, intron 4 of 10)	intron (NM_001356478, intron 4 of 10)	6059.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	5.65	1.76	1.14	8.04	6.55	5.02	3.65	7.09	17.51	3.01	8.04	2.82
Merged-chr2-14073198-1	chr2	14073098	14073298	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356337)	promoter-TSS (NM_001356337)	736.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	1.62	0.75	3.99	0.0	5.73	5.33	8.64	4.77	4.52	7.03	6.03	4.39
Merged-chr13-101694106-1	chr13	101694006	101694206	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-1476.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.44	2.52	0.0	1.61	2.86	1.25	3.65	5.07	3.93	1.0	0.0	5.33
Merged-chr6-31178436-1	chr6	31178336	31178536	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40038.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.63	2.77	4.56	4.02	6.55	3.14	3.65	5.47	1.38	4.02	5.53	5.33
Merged-chr2-129333681-1	chr2	129333581	129333781	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23709.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.46	2.52	16.54	7.64	0.41	0.0	0.0	0.36	7.28	11.05	16.58	5.01
Merged-chr7-120947849-1	chr7	120947749	120947949	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025298)	TTS (NM_025298)	30105.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	3.23	3.52	7.42	3.22	2.86	1.25	2.99	4.07	3.93	1.51	4.02	4.07
Merged-chr1-64879120-1	chr1	64879020	64879220	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	77704.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.4	4.53	0.0	4.42	5.32	0.31	1.66	5.97	2.95	4.02	0.5	1.57
Merged-chr7-122979276-2	chr7	122979178	122979378	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175023, exon 3 of 3)	3' UTR (NM_175023, exon 3 of 3)	8714.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	7.67	6.54	5.7	10.86	2.45	5.02	1.0	3.95	0.39	0.0	5.53	0.63
Merged-chr19-10174026-1	chr19	10173926	10174126	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8862.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	4.04	7.55	2.28	10.46	5.73	5.33	2.33	3.11	3.93	3.01	0.0	0.63
Merged-chr2-153291848-1	chr2	153291748	153291948	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	MIR3|SINE|MIR	432.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	2.02	4.28	0.0	6.84	1.64	6.27	8.3	4.4	4.33	6.03	2.01	3.76
Merged-chr17-35200216-1	chr17	35200116	35200316	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001278601, exon 3 of 3)	exon (NM_001278601, exon 3 of 3)	1791.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	7.67	7.55	3.42	2.41	7.36	9.09	7.31	1.01	6.88	16.57	5.53	2.82
Merged-chr18-55125039-1	chr18	55124939	55125139	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132448.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.21	0.5	1.14	1.21	7.36	1.25	0.66	1.57	4.33	10.54	9.55	6.89
Merged-chr2-32130609-1	chr2	32130509	32130709	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20539.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	6.06	2.26	7.99	7.24	3.68	5.64	1.99	5.47	3.74	3.51	8.04	5.64
Merged-chr5-112342506-1	chr5	112342406	112342606	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138646)	promoter-TSS (NM_138646)	534.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	4.04	3.02	2.28	2.41	3.27	5.64	6.98	4.93	3.74	10.04	5.02	6.27
Merged-chr15-97918227-1	chr15	97918127	97918327	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9931.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	2.83	2.26	0.0	0.4	4.09	8.15	1.66	4.46	6.49	2.01	6.03	6.27
Merged-chr4-134547221-1	chr4	134547121	134547321	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	4945.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	4.04	0.75	0.0	0.4	0.0	0.0	0.0	0.95	8.26	9.54	9.55	1.88
Merged-chr11-73109981-1	chr11	73109881	73110081	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	19386.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.81	1.51	0.0	0.8	5.73	0.0	1.33	0.79	0.0	0.0	0.0	0.94
Merged-chr1-106351707-1	chr1	106351607	106351807	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 10 of 16)	intron (NM_133821, intron 10 of 16)	179838.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	3.77	6.85	0.8	0.0	6.27	1.99	1.91	8.06	9.04	10.05	0.63
Merged-chr4-138000910-1	chr4	138000810	138001010	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	3085.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.4	0.25	0.0	4.02	2.45	6.59	0.66	10.96	4.33	1.0	8.04	1.25
Merged-chr9-59660743-1	chr9	59660643	59660843	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	4375.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	5.65	5.53	7.99	1.61	0.41	5.64	5.98	2.64	7.08	4.02	5.02	3.45
Merged-chr11-118238077-1	chr11	118237977	118238177	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10515.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.42	3.02	5.7	6.84	5.32	6.27	2.66	5.1	9.05	1.0	2.01	6.58
Merged-chr15-81804881-1	chr15	81804781	81804981	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	2208.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	6.86	6.54	2.28	2.82	3.68	6.27	5.98	4.79	8.65	9.04	6.53	5.95
Merged-chr5-90895216-1	chr5	90895116	90895316	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	3971.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	5.65	5.28	5.7	0.8	7.77	7.21	0.66	1.01	3.34	1.51	1.51	0.63
Merged-chr1-52133363-1	chr1	52133263	52133463	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001205313, intron 6 of 24)	intron (NM_001205313, intron 6 of 24)	13741.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.23	7.55	11.41	0.0	0.0	5.02	0.33	1.23	12.78	5.52	6.03	1.88
Merged-chr11-55022737-2	chr11	55022648	55022848	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10723.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	8.08	4.02	10.27	8.85	7.77	5.02	3.99	4.82	2.56	4.52	2.01	7.83
Merged-chr11-61418102-2	chr11	61418014	61418214	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35878.0	NM_009548	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	6.06	6.29	7.99	6.44	2.05	8.78	4.98	3.9	7.47	3.01	7.54	6.27
Merged-chr12-32912935-1	chr12	32912835	32913035	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	40854.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.23	2.52	2.28	2.41	6.55	1.88	1.33	4.43	1.77	16.07	9.55	3.13
Merged-chr7-83893787-1	chr7	83893687	83893887	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023403, intron 1 of 2)	intron (NM_023403, intron 1 of 2)	1787.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	1.62	9.06	3.42	3.22	4.91	8.15	2.33	4.29	9.05	3.51	9.55	5.33
Merged-chr13-35447879-1	chr13	35447779	35447979	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-211983.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.23	2.77	4.56	4.83	5.32	3.45	3.32	4.21	0.79	2.51	0.5	3.76
Merged-chr7-73550494-1	chr7	73550394	73550594	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037569, intron 3 of 4)	intron (NR_037569, intron 3 of 4)	7901.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	1.62	2.01	0.0	0.0	2.05	5.33	2.66	2.55	12.0	9.54	3.01	1.88
Merged-chr1-64611657-1	chr1	64611557	64611757	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025964, intron 2 of 2)	B1_Mus1|SINE|Alu	5511.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.85	1.76	4.56	0.0	2.05	1.25	1.33	0.03	5.11	2.01	11.05	8.14
Merged-chr8-71725664-1	chr8	71725564	71725764	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028715)	promoter-TSS (NM_028715)	17.0	NR_131256	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.81	7.55	2.28	3.22	6.14	3.14	1.0	5.05	7.47	4.02	6.53	5.64
Merged-chr14-31408830-1	chr14	31408730	31408930	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8847.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.81	0.5	0.0	4.02	2.45	1.88	7.31	5.5	1.38	0.0	5.02	2.82
Merged-chr7-92641136-1	chr7	92641036	92641236	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-3994.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	4.85	2.26	3.42	1.21	2.86	5.64	6.64	4.12	7.67	3.01	2.51	3.45
Merged-chr10-79766511-1	chr10	79766411	79766611	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027505, intron 1 of 7)	CpG	441.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	8.48	2.26	10.27	2.01	5.32	4.08	4.98	4.43	7.08	9.04	12.56	4.07
Merged-chr14-63409981-1	chr14	63409881	63410081	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7206.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	2.42	3.02	3.42	3.62	1.23	2.2	4.65	8.27	3.15	3.51	1.0	2.19
Merged-chr3-22142576-1	chr3	22142476	22142676	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65924.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.4	1.01	12.55	5.23	7.36	3.76	2.99	6.73	7.67	5.02	7.03	0.94
Merged-chr9-24774595-1	chr9	24774495	24774695	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020496)	promoter-TSS (NM_020496)	-292.0	NM_001205085	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	2.83	0.5	9.13	2.82	5.73	2.2	3.65	5.41	0.2	1.51	4.52	0.0
Merged-chr9-64794554-1	chr9	64794454	64794654	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16457.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.81	0.75	0.0	0.4	4.5	6.27	1.99	4.93	4.13	1.0	4.02	0.31
Merged-chr11-103402408-1	chr11	103402308	103402508	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	10256.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	11.31	6.79	5.7	1.61	1.64	8.78	3.32	4.01	7.87	2.01	6.53	5.33
Merged-chr12-113487868-1	chr12	113487768	113487968	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1697.0	NM_001009545	238405.0	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	4.85	2.26	0.0	0.0	6.55	2.2	1.66	4.51	1.97	3.01	5.02	0.63
Merged-chr14-22183437-1	chr14	22183337	22183537	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	163725.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	4.04	3.27	3.42	2.41	1.64	5.64	0.66	4.32	3.34	4.02	4.02	1.88
Merged-chr1-38898044-1	chr1	38897944	38898144	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_145142, exon 1 of 7)	5' UTR (NM_145142, exon 1 of 7)	116.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	1.21	1.76	0.0	0.4	6.14	3.45	3.99	5.52	1.38	0.0	3.01	1.25
Merged-chr19-5178796-1	chr19	5178696	5178896	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153129, intron 1 of 23)	RLTR13D3|LTR|ERVK	-60388.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.81	0.5	0.0	0.0	0.0	3.14	0.66	0.59	4.72	8.03	11.05	8.14
Merged-chr9-123801728-1	chr9	123801628	123801828	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	-4749.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	7.67	4.53	3.42	3.62	7.36	3.14	5.98	4.71	6.1	7.03	6.53	3.13
Merged-chr7-51972744-1	chr7	51972644	51972844	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	32970.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	2.42	1.51	1.14	3.22	0.41	2.82	6.64	4.09	3.74	4.02	6.53	4.39
Merged-chr10-62498448-1	chr10	62498348	62498548	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm1t|SINE|B2	9309.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	2.42	6.54	3.42	0.0	4.5	1.88	0.66	0.17	3.54	3.01	2.01	2.19
Merged-chr4-8536950-1	chr4	8536850	8537050	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1306.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	4.44	1.51	5.13	6.84	2.05	6.9	3.65	2.89	7.47	2.51	8.54	4.39
Merged-chr16-91480652-1	chr16	91480552	91480752	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4563.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	3.02	0.0	1.21	0.82	1.88	0.33	2.75	7.67	8.54	1.51	5.64
Merged-chr9-37454648-1	chr9	37454548	37454748	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21473.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	2.02	0.75	1.71	5.23	4.09	1.88	4.98	3.84	4.92	2.01	0.0	4.7
Merged-chr2-39006278-1	chr2	39006178	39006378	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	2.83	2.77	0.0	0.8	1.64	6.59	7.31	3.62	11.8	3.51	4.02	1.57
Merged-chr13-67871054-1	chr13	67870954	67871154	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7728.0	NM_001001185	408058.0	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	1.21	0.5	0.57	0.0	0.0	0.0	0.0	0.0	11.01	4.52	9.04	4.39
Merged-chr4-137331875-1	chr4	137331775	137331975	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009861, intron 3 of 5)	ID_B1|SINE|B4	25884.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	8.48	6.54	6.85	4.83	4.91	2.82	4.32	9.48	11.8	4.52	4.52	5.33
Merged-chr2-158502563-1	chr2	158502463	158502663	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145635)	promoter-TSS (NM_145635)	-49.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	10.5	4.28	4.56	2.01	5.32	4.7	2.99	2.5	2.36	3.01	3.52	3.76
Merged-chr11-78436177-1	chr11	78436077	78436277	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13943.0	NM_022411	20500.0	Mm.274058	NM_022411	ENSMUSG00000001095	Slc13a2	Nadc-1|Nadc1|mNaDC-1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding	2.83	6.04	6.85	0.8	2.86	5.02	1.33	4.04	4.52	1.51	7.03	2.51
Merged-chr11-102140731-1	chr11	102140631	102140831	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4782.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	6.46	3.27	3.99	13.27	1.64	6.27	1.33	5.5	3.74	6.03	1.0	7.21
Merged-chr5-139746024-1	chr5	139745924	139746124	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9691.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.25	4.53	2.28	3.22	6.55	7.21	1.0	5.33	11.6	7.53	9.04	2.51
Merged-chr15-38074708-1	chr15	38074608	38074808	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4146.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	5.65	5.79	7.42	4.83	4.91	5.02	4.65	4.4	10.23	2.01	4.02	3.13
Merged-chr10-8519855-1	chr10	8519755	8519955	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1030.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.44	3.02	0.0	2.01	2.45	3.14	3.99	4.93	8.46	7.53	9.55	7.83
Merged-chr11-97489809-1	chr11	97489709	97489909	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001289118)	TTS (NM_001289118)	10531.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	4.85	3.02	2.85	1.61	6.95	3.76	5.65	3.25	7.08	3.01	2.01	7.52
Merged-chr15-58697319-1	chr15	58697219	58697419	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	126108.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	9.29	4.53	5.7	3.62	4.91	12.54	2.66	6.62	5.7	4.52	5.53	3.76
Merged-chr16-30925743-1	chr16	30925643	30925843	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.4	3.02	5.7	0.8	3.27	3.76	5.98	4.23	4.52	10.54	1.51	2.51
Merged-chr5-138222339-1	chr5	138222239	138222439	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3565.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	8.08	2.77	8.56	5.63	5.73	5.33	1.33	5.55	2.95	3.51	7.03	2.82
Merged-chr17-34280207-1	chr17	34280107	34280307	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER12|LTR|ERVK	7564.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	8.88	12.58	11.41	3.22	1.64	1.25	0.33	0.0	4.13	0.5	0.0	0.94
Merged-chr9-21221089-1	chr9	21220989	21221189	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	18243.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	12.92	8.55	6.85	6.03	10.64	11.29	9.63	13.79	19.08	14.56	16.08	8.46
Merged-chr9-113837202-1	chr9	113837102	113837302	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286600, intron 3 of 34)	intron (NM_001286600, intron 3 of 34)	24616.0	NM_001286602	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.81	1.26	3.42	0.0	6.14	1.88	2.99	7.57	0.39	1.0	3.01	0.63
Merged-chr18-39272453-1	chr18	39272353	39272553	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	214792.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.62	3.02	2.28	0.4	4.5	7.21	2.66	3.79	2.36	3.01	5.53	1.25
Merged-chr14-69029302-1	chr14	69029202	69029402	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009285)	promoter-TSS (NM_009285)	13.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	3.63	2.52	9.13	11.26	2.05	2.51	4.65	4.35	4.33	0.0	2.01	2.19
Merged-chr8-70343863-1	chr8	70343763	70343963	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030680, intron 2 of 23)	intron (NM_030680, intron 2 of 23)	9416.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.86	3.27	0.57	2.41	3.27	5.64	1.99	3.42	9.05	2.51	3.01	10.02
Merged-chr7-83810250-1	chr7	83810150	83810350	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15411.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	7.27	6.79	5.7	1.21	0.82	2.82	0.33	1.37	2.95	1.0	4.52	3.76
Merged-chr1-55521305-1	chr1	55521205	55521405	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	115359.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.83	2.01	0.0	2.01	1.23	3.76	5.31	6.25	7.28	5.02	4.52	6.89
Merged-chr8-34815416-1	chr8	34815316	34815516	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	7806.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.25	6.29	6.85	1.21	3.27	3.76	4.32	5.64	2.75	4.02	3.01	0.63
Merged-chr15-82046559-1	chr15	82046459	82046659	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011482, intron 1 of 2)	intron (NM_011482, intron 1 of 2)	1039.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	3.63	8.55	9.13	6.44	2.45	3.14	3.32	4.04	4.92	7.53	8.04	6.89
Merged-chr2-4517796-1	chr2	4517696	4517896	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 7 of 23)	intron (NM_001177843, intron 7 of 23)	-41958.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.02	2.01	3.42	4.02	4.5	4.7	4.65	9.73	6.88	5.02	6.53	5.01
Merged-chr10-42914479-1	chr10	42914379	42914579	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359264, intron 2 of 7)	Charlie18a|DNA|hAT-Charlie	53967.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	2.02	1.26	1.14	1.61	4.5	5.64	1.33	3.93	1.18	3.51	4.52	4.07
Merged-chr8-31215288-1	chr8	31215188	31215388	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	27957.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	5.25	1.76	1.14	3.22	1.23	6.9	1.33	3.34	4.72	1.51	4.02	0.94
Merged-chr8-25522985-1	chr8	25522885	25523085	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079908, intron 1 of 17)	intron (NM_001079908, intron 1 of 17)	4226.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.23	1.76	1.14	2.41	6.95	5.02	1.33	4.82	5.31	2.51	3.01	3.45
Merged-chr10-40024872-1	chr10	40024772	40024972	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144821, intron 1 of 3)	CpG	396.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	1.62	5.53	10.84	4.83	4.5	4.08	5.98	5.72	6.1	2.51	5.53	2.19
Merged-chr7-74679116-2	chr7	74679034	74679234	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124354.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	5.25	5.79	14.26	3.22	3.27	0.63	2.66	6.17	5.7	4.02	8.04	9.08
Merged-chr9-106566613-1	chr9	106566513	106566713	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4354.0	NM_026090	67320.0	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	0.0	5.53	3.42	4.83	4.09	6.27	6.31	4.21	3.34	3.01	2.01	5.33
Merged-chr14-20179231-1	chr14	20179131	20179331	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021542, intron 1 of 4)	intron (NM_021542, intron 1 of 4)	2551.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	6.46	4.53	2.28	4.83	4.91	14.42	6.98	6.36	5.31	3.51	7.03	4.39
Merged-chr5-114700252-1	chr5	114700152	114700352	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	-7527.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	3.23	7.29	1.14	1.61	3.68	3.76	4.65	4.79	11.01	8.03	6.53	6.27
Merged-chr6-108232277-1	chr6	108232177	108232377	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	19181.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	2.83	3.27	3.99	4.02	4.09	4.39	2.66	4.77	3.15	3.51	3.01	5.33
Merged-chr6-134333329-1	chr6	134333229	134333429	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-63000.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.81	0.5	0.0	1.61	3.27	1.88	4.65	4.57	1.97	5.52	1.0	0.31
Merged-chr19-29464208-1	chr19	29464108	29464308	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	B2_Mm2|SINE|B2	53289.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.04	5.53	9.7	5.23	10.64	8.78	7.97	5.02	9.64	2.01	21.61	7.83
Merged-chr4-141387537-1	chr4	141387437	141387637	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024412, intron 16 of 19)	B3|SINE|B2	10562.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	1.21	1.51	0.57	5.23	5.73	5.02	2.66	0.9	9.24	6.03	10.05	4.7
Merged-chrX-60026894-1	chrX	60026794	60026994	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305797, intron 5 of 6)	intron (NM_001305797, intron 5 of 6)	27430.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	3.23	0.5	7.42	0.8	1.64	5.02	3.65	5.05	4.13	6.53	7.03	1.57
Merged-chr16-38363265-2	chr16	38363167	38363367	+	576.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022318, intron 1 of 3)	Charlie24|DNA|hAT-Charlie	1077.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	16.56	6.79	6.85	4.83	6.14	12.86	3.65	5.02	6.29	8.54	9.55	3.13
Merged-chr6-72345884-2	chr6	72345777	72345977	+	576.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-702.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	11.71	3.27	6.85	10.46	3.27	5.33	5.65	4.77	9.83	11.05	14.07	13.78
Merged-chr4-132816200-2	chr4	132816110	132816310	+	576.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19846.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	2.83	4.78	2.85	2.41	6.55	8.47	4.98	3.64	6.49	7.03	9.55	8.14
Merged-chr12-103099345-2	chr12	103099233	103099433	+	576.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081017, intron 26 of 48)	intron (NM_001081017, intron 26 of 48)	142813.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	6.46	4.53	6.28	5.63	8.18	7.84	4.98	4.85	7.47	9.04	13.57	9.4
Merged-chr6-127142628-3	chr6	127142532	127142732	+	576.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6757.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	5.25	4.02	9.7	7.24	9.41	5.64	3.99	4.49	7.67	13.56	7.54	10.65
Merged-chr9-22519742-1	chr9	22519642	22519842	+	576.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	44027.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.02	3.02	2.85	0.4	12.27	5.33	4.65	6.03	5.51	3.01	5.02	7.21
Merged-chr6-127268205-2	chr6	127268086	127268286	+	576.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39781.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	9.69	3.27	4.56	5.63	5.73	6.9	3.32	4.35	9.44	13.56	8.54	7.21
Merged-chr1-89646892-1	chr1	89646792	89646992	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	37000.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	9.29	4.02	4.56	7.24	9.41	5.64	2.33	3.67	3.74	1.51	5.53	1.88
Merged-chr5-123860609-1	chr5	123860509	123860709	+	576.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X7A_LINE|LINE|CR1	4907.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.86	4.28	0.57	0.8	4.5	2.82	3.32	2.89	9.05	11.05	4.02	6.58
Merged-chr11-99202532-2	chr11	99202422	99202622	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28495.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	7.27	8.05	7.99	6.84	10.64	9.09	5.65	2.3	7.87	4.52	11.56	11.28
Merged-chr4-130794266-1	chr4	130794166	130794366	+	576.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	1729.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	2.83	2.01	2.85	1.21	2.45	6.9	2.99	2.21	10.42	1.51	9.04	10.96
Merged-chr2-92037110-1	chr2	92037010	92037210	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12940.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	1.21	1.01	5.7	6.03	6.55	5.33	2.99	4.4	6.49	2.01	8.54	10.96
Merged-chr8-124744828-1	chr8	124744728	124744928	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	6981.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	5.65	11.57	4.56	7.64	6.55	5.96	6.64	2.89	1.38	0.5	1.0	0.63
Merged-chr19-46136267-2	chr19	46136249	46136449	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007703)	TTS (NM_007703)	4450.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	7.67	2.77	5.7	6.44	4.09	1.88	2.66	3.22	1.77	0.5	4.02	7.83
Merged-chr12-56030726-1	chr12	56030626	56030826	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	194360.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.81	1.01	0.0	0.8	3.27	5.33	4.65	6.42	2.75	3.01	4.02	5.33
Merged-chr10-96376767-2	chr10	96376674	96376874	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150567.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.88	5.79	3.42	4.83	5.73	4.39	6.98	5.97	8.65	8.54	6.53	2.51
Merged-chr11-75195337-1	chr11	75195237	75195437	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177708, intron 1 of 1)	CpG	1344.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	8.08	4.53	2.85	2.41	5.32	4.7	1.33	5.5	6.29	6.03	4.52	5.33
Merged-chr14-66278442-1	chr14	66278342	66278542	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	2610.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.65	6.54	9.7	2.41	4.09	8.15	3.32	5.38	4.52	5.02	4.52	0.94
Merged-chr11-116418719-2	chr11	116418620	116418820	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5688.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	6.86	1.76	0.57	2.41	4.91	5.96	1.33	2.86	6.69	14.56	1.51	4.39
Merged-chr5-116023467-1	chr5	116023367	116023567	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031869, intron 1 of 6)	intron (NM_031869, intron 1 of 6)	961.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	3.23	1.26	11.41	3.22	3.27	5.96	8.3	4.91	1.18	1.0	4.52	3.76
Merged-chr18-74213050-1	chr18	74212950	74213150	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-3162.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	1.62	4.02	0.0	0.8	4.91	6.59	3.99	4.29	9.83	8.54	8.04	1.25
Merged-chr1-163900353-2	chr1	163900247	163900447	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-28753.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	3.23	10.56	1.14	10.46	2.05	5.96	11.63	4.63	9.64	8.03	10.55	2.51
Merged-chr18-79246392-1	chr18	79246292	79246492	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137001.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.04	0.5	2.28	6.44	6.55	4.7	5.31	3.79	2.36	0.0	6.03	2.51
Merged-chr1-165844746-2	chr1	165844616	165844816	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56035.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	5.25	5.79	3.42	1.61	6.95	4.7	5.31	4.49	7.28	6.03	15.58	7.21
Merged-chr19-45813496-2	chr19	45813392	45813592	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	-1201.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	8.08	7.55	4.56	4.42	10.64	6.27	1.66	5.61	12.98	7.53	8.54	2.51
Merged-chr14-25116563-1	chr14	25116463	25116663	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7302.0	NR_153781	102634576.0	Mm.317855	NR_153781		Gm32123	-	predicted gene, 32123	ncRNA	7.27	2.77	2.85	0.8	4.5	5.02	4.65	3.53	5.11	6.53	3.01	3.45
Merged-chr1-136128089-1	chr1	136127989	136128189	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	3094.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	1.62	0.25	1.14	2.82	5.73	0.94	3.65	3.79	5.11	2.01	5.02	10.34
Merged-chr11-120030390-1	chr11	120030290	120030490	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	11391.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	7.67	5.79	3.42	6.44	7.77	5.02	0.33	3.84	6.49	1.0	2.01	5.95
Merged-chr4-107552959-1	chr4	107552859	107553059	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	118240.0	NM_147221	230587.0	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	5.65	9.06	11.98	13.27	2.05	0.0	0.66	4.6	0.0	2.01	1.51	0.0
Merged-chr9-15542036-1	chr9	15541936	15542136	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359604, intron 2 of 2)	intron (NM_001359604, intron 2 of 2)	36541.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.0	4.02	5.13	0.4	2.05	5.02	7.31	4.04	1.57	1.51	0.0	1.57
Merged-chr11-89019532-1	chr11	89019432	89019632	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20129.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.23	3.02	1.71	2.82	7.36	5.96	1.66	3.64	2.16	1.51	3.52	5.33
Merged-chr15-27664798-3	chr15	27664716	27664916	+	576.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	16726.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.27	5.53	10.27	2.82	3.68	1.25	4.65	5.02	7.08	6.53	10.55	2.82
Merged-chr11-69092513-3	chr11	69092404	69092604	+	576.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009497)	TTS (NM_009497)	3976.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	4.44	8.3	7.42	1.21	6.14	4.08	1.66	5.92	10.62	8.54	9.04	4.7
Merged-chr1-64246750-1	chr1	64246650	64246850	+	576.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125361.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.04	2.26	2.28	1.21	6.14	7.21	6.64	4.26	7.67	3.01	4.52	3.13
Merged-chr16-93973791-1	chr16	93973691	93973891	+	576.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	35046.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.44	3.77	1.14	1.21	7.36	2.82	8.64	5.13	4.13	0.5	6.53	3.45
Merged-chr14-102884501-2	chr14	102884420	102884620	+	576.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98112.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	2.02	2.26	6.85	3.62	3.68	5.02	3.32	6.67	6.88	8.03	11.05	5.95
Merged-chr5-65881355-2	chr5	65881266	65881466	+	576.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17797.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	2.02	3.27	6.85	3.62	7.36	3.14	4.32	4.85	7.87	6.03	4.02	9.08
Merged-chr14-121915882-2	chr14	121915799	121915999	+	576.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-125.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.81	8.3	7.42	6.84	5.73	5.96	1.99	4.43	11.01	7.53	2.51	1.88
Merged-chr13-49058691-2	chr13	49058599	49058799	+	576.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 21 of 29)	intron (NM_001290313, intron 21 of 29)	89629.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	5.65	3.52	6.85	3.22	7.77	5.64	6.31	4.09	8.85	4.02	7.03	5.95
Merged-chr9-46218321-2	chr9	46218232	46218432	+	576.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027498, intron 21 of 24)	intron (NM_027498, intron 21 of 24)	-10298.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	8.48	3.77	13.69	8.85	3.68	10.35	6.31	3.53	4.33	0.0	7.03	5.64
Merged-chr2-160864257-1	chr2	160864157	160864357	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177263, intron 1 of 3)	intron (NM_177263, intron 1 of 3)	8733.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	8.08	1.51	3.42	5.63	4.91	5.96	1.99	5.72	6.49	6.03	2.01	5.95
Merged-chr9-119265901-1	chr9	119265801	119266001	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34209.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	5.25	6.29	2.28	7.64	7.77	7.84	10.96	4.85	2.75	0.0	2.01	2.19
Merged-chr2-126932035-1	chr2	126931935	126932135	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	1200.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	5.65	5.28	5.7	12.07	7.77	10.03	1.33	2.86	13.77	21.09	8.04	4.39
Merged-chr1-181538396-1	chr1	181538296	181538496	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26945.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.81	2.52	1.14	4.83	2.05	3.14	5.98	6.22	1.38	4.02	4.52	5.64
Merged-chr5-32934831-1	chr5	32934731	32934931	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360014, intron 24 of 40)	B2_Mm2|SINE|B2	71110.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.0	2.01	1.14	0.0	0.0	0.0	1.0	1.91	8.85	8.03	9.04	2.51
Merged-chr1-171479184-1	chr1	171479084	171479284	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-24294.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	7.27	7.55	3.42	0.8	6.95	5.64	0.0	4.15	4.52	1.51	6.03	2.51
Merged-chr15-80012963-1	chr15	80012863	80013063	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	CpG	1845.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.23	3.27	4.56	4.83	2.05	3.76	4.32	6.67	2.36	3.51	2.01	4.7
Merged-chr11-85837971-1	chr11	85837871	85838071	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009324, exon 6 of 7)	exon (NM_009324, exon 6 of 7)	5356.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	2.83	3.77	7.99	4.83	2.45	4.39	4.32	3.93	1.57	2.51	2.51	4.7
Merged-chr1-36462024-1	chr1	36461924	36462124	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9573.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.81	2.77	4.56	7.24	4.91	4.39	2.66	5.3	2.95	2.01	1.51	5.33
Merged-chr16-32458180-1	chr16	32458080	32458280	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163160, intron 3 of 8)	intron (NM_001163160, intron 3 of 8)	26950.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	3.63	4.02	3.42	7.24	4.91	7.21	4.32	4.04	2.36	2.01	5.02	5.01
Merged-chr2-166592722-1	chr2	166592622	166592822	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 17 of 39)	intron (NM_177782, intron 17 of 39)	28200.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	3.63	1.51	3.99	3.62	8.18	3.14	5.65	0.62	6.29	10.54	6.53	7.52
Merged-chr2-11490805-1	chr2	11490705	11490905	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133232, intron 3 of 14)	ID4|SINE|ID	11285.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.42	5.53	6.28	9.65	0.0	4.08	4.32	9.25	5.9	6.53	8.54	8.46
Merged-chr3-122251172-1	chr3	122251072	122251272	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	5615.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	2.52	7.99	1.21	1.23	8.78	1.99	3.39	2.56	3.51	5.02	6.58
Merged-chrX-99689955-1	chrX	99689855	99690055	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-131114.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	0.0	1.01	1.14	4.02	4.09	7.53	3.65	5.05	0.98	2.51	2.51	1.25
Merged-chr17-29109572-1	chr17	29109472	29109672	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15803.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	8.48	3.27	11.41	11.26	0.0	0.0	0.0	0.34	0.0	0.0	2.01	0.94
Merged-chr12-34663208-1	chr12	34663108	34663308	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	L1_Mus4|LINE|L1	-134319.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.83	4.78	1.71	3.62	9.41	6.9	3.65	0.93	6.69	4.02	5.53	2.82
Merged-chr11-116785042-1	chr11	116784942	116785142	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-9535.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	8.48	13.33	2.85	1.21	9.0	4.39	3.32	2.89	1.57	0.5	0.0	0.31
Merged-chr17-34849796-1	chr17	34849696	34849896	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	408.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	2.83	6.54	6.85	3.22	5.32	5.96	2.99	2.36	9.05	4.52	1.51	5.01
Merged-chr12-99627353-1	chr12	99627253	99627453	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045288, intron 1 of 1)	intron (NR_045288, intron 1 of 1)	621.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	3.23	2.52	1.14	6.44	5.73	2.51	3.99	4.99	2.36	5.02	8.54	2.82
Merged-chr7-80106232-1	chr7	80106132	80106332	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	9118.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	9.29	8.8	0.0	0.0	0.82	3.45	0.66	0.87	1.57	2.01	3.52	0.31
Merged-chr17-27553100-1	chr17	27553000	27553200	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-3474.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	3.63	1.01	5.7	0.8	6.14	5.02	3.99	4.88	9.64	7.03	4.52	3.76
Merged-chr2-76608652-1	chr2	76608552	76608752	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39342.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.81	2.01	3.42	8.85	4.91	1.88	4.32	3.95	0.98	4.02	7.03	7.21
Merged-chr13-58035651-1	chr13	58035551	58035751	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-12451.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	1.21	2.77	2.85	6.84	4.91	8.15	2.33	3.95	6.1	6.53	6.03	4.39
Merged-chr1-120510510-3	chr1	120510408	120510608	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5484.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	6.06	3.77	17.68	9.65	2.45	3.45	2.99	3.64	10.42	4.52	11.56	9.08
Merged-chr10-94047266-1	chr10	94047166	94047366	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	11265.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.02	2.26	0.0	3.22	1.64	4.08	3.65	1.21	5.31	8.54	14.07	7.52
Merged-chr4-66858393-1	chr4	66858293	66858493	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30842.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	1.62	4.02	2.28	0.4	6.55	2.2	5.31	5.69	3.93	1.51	3.52	0.31
Merged-chr12-99626468-1	chr12	99626368	99626568	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045288, intron 1 of 1)	PB1D10|SINE|Alu	1506.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	1.62	2.77	3.42	1.21	8.18	0.63	1.0	5.07	8.06	4.52	1.51	5.95
Merged-chr8-119380810-1	chr8	119380710	119380910	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14082.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	5.65	1.26	0.0	1.21	2.05	5.96	2.33	4.07	4.33	7.03	8.04	2.51
Merged-chr10-93123350-1	chr10	93123250	93123450	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-37526.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.81	2.77	0.0	6.84	1.23	1.88	1.66	0.11	7.28	2.01	5.02	2.82
Merged-chr1-136139460-1	chr1	136139360	136139560	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	RMER10B|LTR|ERVL	8070.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	5.65	7.04	5.7	4.02	5.73	0.94	10.3	3.67	7.67	5.02	8.04	5.64
Merged-chr10-10397025-1	chr10	10396925	10397125	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 20 of 36)	intron (NM_001127353, intron 20 of 36)	75289.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.67	2.77	3.42	2.41	0.82	2.82	2.33	5.19	7.67	3.51	13.06	5.64
Merged-chr2-48915991-1	chr2	48915891	48916091	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149356, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	33276.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	1.21	0.75	2.85	3.22	3.68	6.27	6.64	4.54	2.95	5.52	8.04	8.14
Merged-chr12-39561155-1	chr12	39561055	39561255	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	476221.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.81	1.01	1.14	0.4	0.0	5.02	4.65	5.05	4.13	1.51	2.51	0.31
Merged-chr11-89093287-1	chr11	89093187	89093387	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033266)	TTS (NM_001033266)	19446.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	10.09	9.56	25.1	12.47	10.64	13.48	7.31	8.33	9.44	11.55	12.56	10.65
Merged-chr5-36579197-1	chr5	36579097	36579297	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	MIR|SINE|MIR	3200.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.63	3.27	5.7	4.42	6.95	1.88	4.65	4.29	2.56	2.51	5.02	2.19
Merged-chr11-70528784-1	chr11	70528684	70528884	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008946)	TTS (NM_008946)	3427.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	4.04	7.8	3.42	5.23	3.27	5.02	2.99	3.98	6.1	1.51	6.03	1.88
Merged-chr10-122715521-1	chr10	122715421	122715621	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	URR1B|DNA|hAT-Charlie	36206.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.83	2.01	1.14	1.61	0.0	1.57	5.65	4.79	3.74	1.51	4.02	4.7
Merged-chr11-103327147-1	chr11	103327047	103327247	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17555.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	9.69	4.53	0.57	1.21	5.32	5.64	0.66	6.31	10.62	5.02	3.52	4.07
Merged-chr3-152274102-1	chr3	152274002	152274202	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_174868, exon 16 of 16)	3' UTR (NM_174868, exon 16 of 16)	-7752.0	NM_199465	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	2.42	4.02	0.0	0.8	5.73	2.51	0.0	5.78	2.75	0.5	5.53	1.57
Merged-chr7-67430210-1	chr7	67430110	67430310	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-57352.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	1.01	0.0	3.22	1.64	4.7	5.31	3.36	0.79	2.01	5.53	4.07
Merged-chr11-86756251-1	chr11	86756151	86756351	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	1316.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	4.04	4.28	4.56	5.23	4.91	4.39	3.32	5.8	6.88	3.51	8.54	10.34
Merged-chr6-114383259-1	chr6	114383159	114383359	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14677.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.81	1.51	2.85	1.61	2.86	5.64	5.31	6.64	0.98	0.5	2.51	1.57
Merged-chr4-141641810-1	chr4	141641710	141641910	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 4 of 18)	intron (NM_001347237, intron 4 of 18)	-17976.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.25	0.75	3.42	2.41	2.05	2.51	6.64	4.54	2.75	0.5	2.01	2.19
Merged-chr10-21997859-1	chr10	21997759	21997959	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011361, intron 9 of 11)	intron (NM_011361, intron 9 of 11)	3193.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.85	3.27	2.85	5.63	1.64	4.08	3.32	2.61	6.49	9.04	8.54	3.45
Merged-chr6-122631890-1	chr6	122631790	122631990	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5466.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	3.63	0.75	10.27	3.62	3.27	5.64	4.32	3.17	6.29	1.51	10.55	6.58
Merged-chr11-51922491-1	chr11	51922391	51922591	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45140.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	2.42	1.01	0.0	4.02	4.91	9.72	2.99	5.33	6.69	4.52	5.02	2.51
Merged-chr12-113217478-1	chr12	113217378	113217578	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31575.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	2.42	5.28	6.28	1.21	5.32	2.51	1.0	5.8	2.95	4.52	3.52	6.58
Merged-chr8-123331596-2	chr8	123331481	123331681	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	3.23	7.8	6.85	4.83	4.91	9.41	7.31	3.79	2.95	12.55	5.02	6.58
Merged-chr8-36931826-1	chr8	36931726	36931926	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	20616.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.85	3.77	1.71	2.41	1.23	0.94	3.99	2.44	5.51	9.54	1.0	5.01
Merged-chr4-28943651-1	chr4	28943551	28943751	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-124428.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	5.65	6.04	6.85	0.8	5.73	7.53	7.31	4.01	6.49	3.51	7.03	2.51
Merged-chr2-21111630-1	chr2	21111530	21111730	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93735.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.04	0.5	1.71	5.63	5.73	3.45	2.99	5.05	3.15	2.01	4.52	3.76
Merged-chr9-24506682-1	chr9	24506582	24506782	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3542.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	12.52	6.04	2.28	9.65	3.27	1.25	1.99	7.85	6.29	4.52	6.53	8.77
Merged-chr1-48598215-1	chr1	48598115	48598315	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-646401.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	2.42	2.52	2.28	0.8	8.59	3.45	10.63	3.36	3.54	1.51	0.0	1.25
Merged-chr1-121307309-1	chr1	121307209	121307409	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271532, intron 2 of 4)	intron (NM_001271532, intron 2 of 4)	20369.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	2.83	1.26	2.28	2.82	5.73	2.2	5.98	8.97	4.13	12.55	13.06	5.01
Merged-chr1-93757779-1	chr1	93757679	93757879	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174874, intron 1 of 12)	Lx9|LINE|L1	2746.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	5.65	1.26	1.14	0.8	1.64	0.0	7.31	4.57	0.59	4.52	0.5	3.76
Merged-chr3-115799474-1	chr3	115799374	115799574	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84419.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.62	1.51	0.57	2.01	5.32	4.08	1.33	5.13	4.33	3.51	3.52	3.45
Merged-chr2-104546693-1	chr2	104546593	104546793	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9965.0	NR_136919	668733.0	Mm.461873	NR_136919		Gm13884	-	SWIM type zinc finger 7 associated protein 1 pseudogene	pseudo	1.21	2.52	5.13	5.63	4.5	3.76	5.65	4.63	6.49	4.02	11.05	3.76
Merged-chr19-7417300-1	chr19	7417200	7417400	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175381)	promoter-TSS (NM_175381)	-325.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	1.21	1.51	2.28	2.01	0.82	2.2	1.66	4.91	2.56	3.51	2.51	2.19
Merged-chr3-146800664-1	chr3	146800564	146800764	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12282.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	4.44	3.77	1.71	4.83	4.5	3.45	5.31	4.49	2.95	1.51	8.04	9.4
Merged-chr11-73326038-1	chr11	73325938	73326138	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1401.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	2.42	6.29	0.0	0.8	2.45	2.2	6.64	4.01	2.16	2.51	2.01	1.88
Merged-chr4-135054610-1	chr4	135054510	135054710	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66035.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	3.63	4.78	7.99	11.66	4.09	1.25	5.31	5.19	4.52	8.54	4.52	2.82
Merged-chr1-192752880-1	chr1	192752780	192752980	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	18339.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.83	4.28	5.13	3.62	2.86	2.51	2.33	2.72	8.26	2.01	9.04	3.13
Merged-chr15-62038599-1	chr15	62038499	62038699	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	613.0	NR_003368	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.23	7.8	2.28	5.63	4.5	7.53	4.32	3.95	11.6	3.51	6.53	7.21
Merged-chr1-156537238-1	chr1	156537138	156537338	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-21549.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.67	2.52	1.14	10.86	2.86	5.33	3.99	4.01	0.98	1.51	7.03	5.64
Merged-chr18-84806669-1	chr18	84806569	84806769	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME3B|LINE|L1	-44669.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	2.42	2.77	2.28	2.41	4.09	4.7	3.65	4.37	3.54	6.53	8.54	8.14
Merged-chr11-83065904-1	chr11	83065804	83066004	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	792.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	2.83	5.03	4.56	7.24	3.68	7.84	3.32	1.21	7.47	4.02	8.04	5.33
Merged-chr2-12881195-1	chr2	12881095	12881295	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42846.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	1.01	2.28	4.42	3.27	5.02	3.65	4.26	3.34	2.01	9.55	3.76
Merged-chr10-77565024-1	chr10	77564924	77565124	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008404, intron 15 of 15)	intron (NM_008404, intron 15 of 15)	-16631.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	7.27	6.29	1.71	0.4	0.82	1.57	0.0	0.62	2.75	3.01	1.51	3.45
Merged-chr4-47284253-1	chr4	47284153	47284353	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 20 of 39)	intron (NM_009928, intron 20 of 39)	-68969.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.85	2.01	2.85	0.0	5.32	6.59	2.66	2.72	10.03	15.06	10.55	4.07
Merged-chr3-80079938-1	chr3	80079838	80080038	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	194008.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	5.65	2.52	11.98	7.24	5.32	4.7	2.33	11.75	6.88	4.52	7.03	1.25
Merged-chr1-176853026-1	chr1	176852926	176853126	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-16893.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	6.86	2.01	0.0	2.01	0.82	2.51	4.32	4.4	5.31	8.03	10.05	3.76
Merged-chr10-99253579-1	chr10	99253479	99253679	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9652.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.44	7.55	3.42	4.02	3.68	4.7	1.0	4.88	6.49	8.03	2.01	4.07
Merged-chr15-62392031-1	chr15	62391931	62392131	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-172580.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.21	0.5	2.28	4.02	8.59	3.76	2.33	4.96	2.75	6.03	3.01	1.88
Merged-chr6-125403685-1	chr6	125403585	125403785	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23181.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	1.62	2.77	2.85	3.62	4.91	2.51	1.33	3.98	5.7	6.03	3.01	1.57
Merged-chr5-64764643-2	chr5	64764540	64764740	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38883.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.27	6.29	8.56	8.04	9.82	9.41	6.64	4.91	2.56	3.01	1.51	3.45
Merged-chr19-53579110-1	chr19	53579010	53579210	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21286.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	1.62	6.79	3.42	4.83	9.41	8.15	3.99	4.18	9.05	8.03	9.04	5.33
Merged-chr16-90676786-1	chr16	90676686	90676886	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50585.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	6.06	1.26	0.57	1.61	6.55	5.02	2.66	4.23	6.69	4.02	4.52	5.95
Merged-chr3-52077774-2	chr3	52077680	52077880	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	27226.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.86	8.55	5.7	0.0	4.91	7.84	4.32	2.89	5.51	5.02	3.01	0.0
Merged-chr7-17051154-1	chr7	17051054	17051254	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162950, exon 5 of 15)	exon (NM_001162950, exon 5 of 15)	5525.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	8.48	5.28	4.56	2.01	11.45	7.21	3.32	3.5	7.28	8.03	1.51	3.45
Merged-chr10-53443624-1	chr10	53443524	53443724	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33742.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.81	0.5	0.0	1.61	4.91	3.14	2.66	5.16	2.95	1.0	5.02	6.89
Merged-chr13-54838703-1	chr13	54838603	54838803	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49298.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.63	5.28	8.56	3.62	5.73	8.15	6.31	3.98	5.11	7.53	3.52	5.01
Merged-chr5-113815978-1	chr5	113815878	113816078	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	4.44	6.29	3.42	2.41	14.32	6.59	4.98	4.43	7.67	5.52	9.55	5.95
Merged-chr18-23886836-1	chr18	23886736	23886936	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-67852.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.25	3.52	1.14	0.0	5.32	0.63	3.99	3.36	0.79	1.0	0.5	2.82
Merged-chr13-92741054-2	chr13	92740960	92741160	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53758.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	2.42	3.02	5.7	4.02	3.68	9.72	6.64	3.2	8.46	7.53	10.05	8.46
Merged-chr7-35546063-1	chr7	35545963	35546163	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-8319.0	NM_028034	71981.0	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	0.0	1.51	7.42	1.21	4.09	6.59	4.32	4.07	6.69	7.03	10.05	3.76
Merged-chr4-141978707-1	chr4	141978607	141978807	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-4285.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.63	4.78	6.28	0.8	4.91	7.84	0.66	3.08	8.06	11.05	8.54	6.89
Merged-chr4-16170290-1	chr4	16170190	16170390	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	6180.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	2.42	2.52	0.0	2.41	1.64	4.39	2.66	4.54	3.93	4.02	3.52	2.19
Merged-chr1-63130548-1	chr1	63130448	63130648	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045914, intron 1 of 3)	B3|SINE|B2	15808.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0.0	0.0	3.42	0.0	3.68	1.88	6.31	4.88	2.95	2.51	3.01	2.82
Merged-chr15-101119663-1	chr15	101119563	101119763	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144790, exon 4 of 4)	exon (NM_144790, exon 4 of 4)	3908.0	NM_001355656	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.4	0.5	1.14	0.8	0.0	0.63	1.33	0.59	10.23	9.04	8.54	1.57
Merged-chr19-44407547-1	chr19	44407447	44407647	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009127, exon 1 of 6)	5' UTR (NM_009127, exon 1 of 6)	162.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	6.46	7.29	3.42	8.04	9.41	5.96	9.3	6.2	8.26	12.55	7.54	2.82
Merged-chr12-86798985-2	chr12	86798868	86799068	+	575.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64599.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	2.42	2.01	10.27	0.0	5.32	2.82	0.66	5.52	8.46	7.03	8.54	6.89
Merged-chr9-7833565-2	chr9	7833483	7833683	+	575.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291503, exon 2 of 8)	exon (NM_001291503, exon 2 of 8)	3223.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.23	8.8	9.13	6.44	2.05	3.76	1.33	0.95	7.67	2.01	9.04	8.46
Merged-chr8-88621619-1	chr8	88621519	88621719	+	575.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14509.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	5.25	5.53	10.27	0.8	7.77	6.27	3.99	3.73	6.69	1.0	7.03	4.7
Merged-chr11-75325578-3	chr11	75325481	75325681	+	575.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026653, intron 5 of 16)	intron (NM_026653, intron 5 of 16)	22802.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	7.67	3.52	1.14	4.42	2.86	4.08	2.66	4.6	9.44	4.02	9.04	2.82
Merged-chr14-103343446-3	chr14	103343341	103343541	+	575.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	3359.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.44	8.05	8.56	4.83	12.27	3.76	6.64	4.93	8.26	8.54	8.54	8.46
Merged-chr14-61770519-1	chr14	61770419	61770619	+	575.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88146.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.23	4.53	13.69	5.23	10.23	2.51	3.32	5.47	2.56	0.0	2.01	0.63
Merged-chr18-36734454-2	chr18	36734355	36734555	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-615.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	10.09	3.02	0.0	7.64	3.68	8.15	6.98	4.4	8.26	7.53	8.54	5.95
Merged-chr15-57919372-1	chr15	57919272	57919472	+	575.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 2 of 19)	intron (NM_001356310, intron 2 of 19)	7173.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	8.88	5.03	6.85	7.24	1.23	8.15	4.98	4.4	11.01	3.51	12.56	7.83
Merged-chr12-35212875-1	chr12	35212775	35212975	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17978.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0.81	2.26	1.14	1.21	4.5	6.59	3.99	5.38	0.59	0.0	0.0	2.51
Merged-chr12-111587602-2	chr12	111587506	111587706	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021516, intron 1 of 16)	MER20|DNA|hAT-Charlie	13096.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	7.27	4.02	9.13	11.66	7.77	5.02	5.31	2.61	12.78	6.53	8.04	5.01
Merged-chr3-32737525-2	chr3	32737423	32737623	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	460.0	NM_025316	66046.0	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	10.9	3.52	10.27	12.47	2.05	5.33	12.29	6.53	14.55	7.53	10.55	9.4
Merged-chr7-110205063-2	chr7	110204969	110205169	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-16634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.23	3.77	6.85	10.05	4.91	3.45	6.64	6.45	7.47	3.51	10.05	9.4
Merged-chr8-123342459-2	chr8	123342358	123342558	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	9745.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	4.44	5.28	8.56	12.47	4.09	4.7	4.65	4.57	6.29	2.01	12.56	5.01
Merged-chr12-84100274-1	chr12	84100174	84100374	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172580)	promoter-TSS (NM_172580)	-380.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	6.06	0.75	2.28	0.0	0.41	7.53	4.65	4.35	1.97	1.0	0.0	3.13
Merged-chr2-58180986-2	chr2	58180886	58181086	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17012.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	1.01	3.42	0.8	6.55	2.82	4.98	5.36	6.29	7.03	10.05	6.89
Merged-chr17-83708017-2	chr17	83707944	83708144	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054082, intron 1 of 16)	B1F1|SINE|Alu	1881.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.06	8.05	4.56	7.24	4.5	2.51	2.33	5.16	5.9	3.51	7.54	8.14
Merged-chr8-122893639-1	chr8	122893539	122893739	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	45265.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.23	4.02	1.14	1.21	9.0	4.08	0.33	4.4	4.33	3.51	12.06	6.27
Merged-chr14-26436494-1	chr14	26436394	26436594	+	575.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 16 of 22)	B2_Mm2|SINE|B2	78947.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	5.65	6.04	1.71	3.22	2.45	8.47	0.66	3.22	10.23	4.02	9.04	7.83
Merged-chr5-146769791-1	chr5	146769691	146769891	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	25165.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.02	5.79	5.7	6.03	4.5	5.96	5.65	7.15	12.39	9.04	8.54	5.95
Merged-chr16-23311200-2	chr16	23311100	23311300	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	L1Md_F2|LINE|L1	20730.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.23	5.03	0.57	2.41	4.09	7.21	2.66	4.93	8.46	12.05	10.55	1.57
Merged-chr11-26585571-1	chr11	26585471	26585671	+	575.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	8349.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	9.29	5.03	3.99	4.42	6.55	8.78	7.97	5.33	2.36	4.52	3.52	0.0
Merged-chr4-137358470-1	chr4	137358370	137358570	+	575.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	-711.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.81	5.03	0.0	8.04	10.23	4.08	6.31	5.02	4.92	7.53	5.53	9.71
Merged-chr15-100226047-2	chr15	100225942	100226142	+	575.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-1817.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	7.67	7.04	9.13	4.83	8.18	2.51	1.33	4.23	3.34	10.04	3.52	5.95
Merged-chr18-12130313-2	chr18	12130225	12130425	+	575.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	1475.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	8.08	3.77	11.41	2.01	7.36	5.33	1.99	5.69	7.87	9.04	4.52	7.21
Merged-chr1-189887687-1	chr1	189887587	189887787	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026796, intron 7 of 11)	intron (NM_026796, intron 7 of 11)	34604.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.02	1.01	4.56	1.61	3.68	1.57	3.32	5.66	2.16	2.01	4.52	4.7
Merged-chr14-13971827-1	chr14	13971727	13971927	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9975.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	4.85	1.76	2.85	11.66	2.86	0.63	5.65	3.84	9.05	6.53	6.53	5.64
Merged-chr19-55585716-1	chr19	55585616	55585816	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116488.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	2.83	4.02	1.14	0.0	2.05	4.39	4.32	5.36	8.85	8.54	5.02	2.82
Merged-chr3-159840955-1	chr3	159840855	159841055	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	1305.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	3.23	4.02	4.56	4.42	5.73	4.39	4.65	4.6	4.52	7.03	7.03	5.95
Merged-chr10-120698755-1	chr10	120698655	120698855	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66977.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	5.25	3.77	4.56	4.02	1.23	2.82	4.32	5.83	4.52	2.01	7.03	3.45
Merged-chr13-108153145-1	chr13	108153045	108153245	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	5480.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	6.86	5.03	4.56	3.62	4.09	5.02	1.99	5.3	3.74	3.51	8.04	3.13
Merged-chr10-68063667-2	chr10	68063561	68063761	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	84091.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.04	3.77	5.13	4.83	2.45	5.02	5.98	9.98	7.87	8.54	21.1	6.58
Merged-chr10-81495906-1	chr10	81495806	81496006	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	457.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	4.04	3.52	9.13	2.82	2.05	7.53	2.66	2.02	7.87	3.01	11.05	8.14
Merged-chr7-126424482-1	chr7	126424382	126424582	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4285.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	1.21	3.02	5.7	0.8	11.45	6.27	2.66	4.74	2.95	4.02	2.01	3.45
Merged-chr4-129064707-1	chr4	129064607	129064807	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	B1F|SINE|Alu	6436.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.81	2.52	0.57	2.41	2.05	2.51	5.31	0.5	2.36	5.52	2.01	0.31
Merged-chr18-75377634-1	chr18	75377534	75377734	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	10269.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	6.46	4.28	3.42	3.22	4.5	6.59	1.99	4.49	6.49	2.51	6.53	5.64
Merged-chr8-84010039-1	chr8	84009939	84010139	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291292)	TTS (NM_001291292)	1594.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	4.85	3.77	0.0	3.62	5.73	7.21	1.33	2.86	14.55	10.04	7.03	3.76
Merged-chr8-40133088-1	chr8	40132988	40133188	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153865.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.83	5.03	2.28	3.22	1.23	2.2	3.99	4.96	4.52	7.53	5.53	2.19
Merged-chr4-12460360-1	chr4	12460260	12460460	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-288345.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.5	1.14	4.83	4.91	2.2	3.32	7.26	7.47	5.02	10.55	6.27
Merged-chr6-143661017-1	chr6	143660917	143661117	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-9729.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.0	0.5	1.14	0.0	6.55	1.57	6.31	3.56	0.59	0.5	1.0	0.94
Merged-chr10-44348797-1	chr10	44348697	44348897	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	-10879.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	4.04	9.56	6.85	5.23	6.55	2.2	2.33	4.79	9.05	1.0	6.53	7.52
Merged-chr8-79373947-1	chr8	79373847	79374047	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	25521.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.25	6.79	17.68	6.03	5.32	4.39	2.33	2.41	8.26	5.52	3.52	1.88
Merged-chr13-35940643-1	chr13	35940543	35940743	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27263.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.85	4.28	2.85	3.62	5.73	1.88	0.66	4.71	1.97	3.01	4.52	4.39
Merged-chr3-19447841-1	chr3	19447741	19447941	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-60754.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.23	6.79	4.56	8.04	0.0	1.88	2.33	4.51	1.38	0.5	1.51	1.57
Merged-chr11-116724258-1	chr11	116724158	116724358	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-27909.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	10.5	5.28	9.7	7.24	0.0	0.63	0.0	0.5	0.2	0.0	0.0	1.57
Merged-chr9-44537862-1	chr9	44537762	44537962	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11441.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.0	0.25	1.14	0.4	3.27	5.96	2.66	0.93	0.59	1.0	1.51	1.25
Merged-chr14-67723418-1	chr14	67723318	67723518	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	7320.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	6.46	3.02	1.14	2.41	4.09	12.86	3.65	1.88	9.83	5.52	4.52	7.83
Merged-chr10-22302923-1	chr10	22302823	22303023	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3797.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.86	11.57	9.7	6.03	6.95	11.29	11.96	9.25	8.85	1.0	6.03	3.45
Merged-chr15-79261537-1	chr15	79261437	79261637	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177580, exon 9 of 14)	exon (NM_177580, exon 9 of 14)	-6789.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	2.42	1.51	0.0	3.22	7.77	0.63	1.99	1.07	2.56	0.0	1.0	1.88
Merged-chr8-122835199-2	chr8	122835089	122835289	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13185.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	7.27	6.29	10.84	6.84	5.32	3.14	2.33	4.91	7.08	12.05	12.06	8.46
Merged-chr19-37233897-1	chr19	37233797	37233997	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	26352.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	4.04	5.03	1.14	4.02	2.45	1.25	4.65	0.98	3.15	3.01	3.52	2.19
Merged-chr8-91060746-1	chr8	91060646	91060846	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-9311.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	2.42	7.04	3.99	3.62	0.82	3.76	4.65	4.21	3.54	2.01	4.02	3.45
Merged-chr1-64603555-1	chr1	64603455	64603655	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	13613.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	7.27	3.52	13.69	9.25	4.09	4.7	2.33	5.47	8.06	5.02	10.05	5.01
Merged-chr14-69813445-1	chr14	69813345	69813545	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7900.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	8.08	2.77	6.85	4.02	2.86	4.7	5.65	5.44	3.93	11.05	11.56	5.64
Merged-chr13-52576962-1	chr13	52576862	52577062	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3737.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	4.04	5.28	2.85	0.0	4.09	10.03	9.3	2.05	4.52	3.51	2.51	1.88
Merged-chr7-34378004-1	chr7	34377904	34378104	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	11701.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.81	3.02	4.56	4.02	4.09	1.25	9.97	6.11	4.92	2.51	6.03	3.45
Merged-chr13-23585525-1	chr13	23585425	23585625	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001290530)	TTS (NM_001290530)	445.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	10.09	4.78	6.85	4.83	10.23	10.35	3.65	3.03	15.14	6.53	17.59	7.83
Merged-chr17-71185445-1	chr17	71185345	71185545	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	1467.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.81	1.51	1.14	1.61	0.0	0.0	2.99	4.15	2.36	4.02	3.52	0.31
Merged-chr17-45583786-1	chr17	45583686	45583886	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	8607.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	2.83	0.25	1.14	6.44	5.32	2.51	1.66	2.86	9.44	0.5	6.03	6.27
Merged-chr4-46374561-1	chr4	46374461	46374661	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14862.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	4.44	3.02	1.14	6.03	8.18	11.29	8.3	2.13	3.93	4.02	6.03	5.33
Merged-chr13-48540648-1	chr13	48540548	48540748	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2376.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	4.04	0.5	1.14	0.8	1.64	6.9	2.33	4.18	3.15	3.01	4.52	2.19
Merged-chr18-25168533-1	chr18	25168433	25168633	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001033532)	promoter-TSS (NM_001033532)	344.0	NM_001142698	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	24.23	19.12	31.38	32.58	36.0	34.81	57.8	46.88	25.77	25.61	36.68	27.25
Merged-chr1-166171856-1	chr1	166171756	166171956	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	41635.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	1.21	3.27	7.42	4.02	2.05	2.82	5.65	3.76	7.08	4.52	2.51	1.25
Merged-chr4-39276624-1	chr4	39276524	39276724	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-173669.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.0	0.25	0.0	3.22	1.64	0.31	1.33	0.0	8.65	4.52	16.08	5.01
Merged-chr1-131438351-1	chr1	131438251	131438451	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	89010.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	1.62	1.01	0.0	2.41	1.23	5.02	1.66	4.35	2.16	2.01	5.53	2.51
Merged-chr6-113981142-1	chr6	113981042	113981242	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009723, intron 1 of 21)	RSINE1|SINE|B4	-46461.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	3.23	0.0	6.85	4.83	0.41	7.53	4.32	4.74	1.38	2.01	2.51	1.25
Merged-chr4-95045358-1	chr4	95045258	95045458	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6864.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.83	7.04	1.14	6.44	12.27	6.27	3.32	3.84	8.06	9.04	10.05	2.82
Merged-chr2-34752449-1	chr2	34752349	34752549	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	2783.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	2.83	1.01	6.85	2.41	2.05	6.59	2.66	5.3	4.33	8.54	5.02	2.51
Merged-chrX-140664707-1	chrX	140664607	140664807	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358366)	promoter-TSS (NM_001358366)	195.0	NM_011845	23947.0	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	4.04	0.5	3.99	3.22	4.91	3.45	3.99	5.1	4.72	3.51	4.52	0.0
Merged-chr11-109370173-1	chr11	109370073	109370273	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-6519.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	5.25	6.29	1.14	2.82	6.55	6.9	3.99	4.91	11.21	6.53	5.02	5.95
Merged-chr6-124321977-1	chr6	124321877	124322077	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 11 of 16)	intron (NM_001170395, intron 11 of 16)	17326.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	1.62	1.51	1.14	2.82	7.36	3.14	6.31	4.54	0.79	7.53	4.52	1.88
Merged-chr12-102440848-1	chr12	102440748	102440948	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1035.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.63	0.25	4.56	3.22	4.91	1.57	2.33	5.69	4.72	3.01	8.54	4.07
Merged-chr15-66084044-1	chr15	66083944	66084144	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-107240.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	8.08	5.28	2.85	6.44	5.32	3.14	2.66	5.83	2.16	2.51	7.03	0.94
Merged-chr1-34005319-1	chr1	34005219	34005419	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6506.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.23	1.51	3.99	1.21	4.5	3.76	1.33	4.35	0.79	1.0	6.03	0.94
Merged-chr10-13823919-1	chr10	13823819	13824019	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 2 of 5)	intron (NM_025446, intron 2 of 5)	45038.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.86	6.79	13.69	3.22	12.27	5.64	1.66	4.57	8.65	4.52	4.02	3.45
Merged-chr1-132384834-1	chr1	132384734	132384934	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5484.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.23	8.05	1.14	0.8	2.86	12.86	2.66	1.49	8.26	6.53	1.51	1.25
Merged-chr2-89135571-1	chr2	89135471	89135671	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-9842.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	4.04	0.5	3.42	2.01	4.91	3.45	1.0	4.23	1.38	0.0	4.52	3.13
Merged-chr9-35026984-1	chr9	35026884	35027084	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-89744.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.46	3.27	1.14	3.62	2.05	5.64	0.0	3.39	2.56	4.02	2.51	3.13
Merged-chr7-16264113-1	chr7	16264013	16264213	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4573.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	2.42	2.77	3.99	0.8	2.05	0.31	3.65	3.28	7.67	10.04	7.54	10.96
Merged-chr17-5627959-1	chr17	5627859	5628059	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	135359.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.5	3.42	0.8	6.14	4.08	1.33	5.21	1.97	4.02	3.01	2.19
Merged-chr1-87174455-1	chr1	87174355	87174555	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8859.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	12.52	5.28	5.13	0.8	9.82	6.59	2.66	3.28	7.08	9.04	8.04	2.51
Merged-chr6-16897145-1	chr6	16897045	16897245	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	1296.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	1.62	3.02	1.14	2.01	2.45	5.33	3.65	4.49	8.85	2.51	3.01	1.57
Merged-chr5-120779806-1	chr5	120779706	120779906	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2147.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	1.21	3.77	2.28	0.8	5.73	0.63	1.99	5.92	4.33	4.52	3.01	3.13
Merged-chr12-52422882-1	chr12	52422782	52422982	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57727.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	1.62	1.26	11.41	5.63	6.95	2.82	1.66	6.64	1.97	1.0	1.0	1.57
Merged-chr18-77775120-1	chr18	77775020	77775220	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007505, intron 1 of 11)	intron (NM_007505, intron 1 of 11)	-1235.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	5.25	3.02	4.56	0.8	4.91	7.53	2.33	2.5	10.42	9.54	3.01	0.94
Merged-chr3-121844812-1	chr3	121844712	121844912	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29510.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.23	6.04	6.85	8.04	6.55	3.14	5.98	4.65	5.9	7.53	8.54	4.07
Merged-chr9-103109226-1	chr9	103109126	103109326	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2848.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0	0.0	0.0	8.85	2.01	5.02	7.52
Merged-chr2-102863791-1	chr2	102863691	102863891	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 2 of 13)	intron (NM_001039150, intron 2 of 13)	37874.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.02	1.01	0.0	0.0	6.14	4.08	5.31	3.56	5.31	8.03	2.51	5.33
Merged-chr11-120886671-1	chr11	120886571	120886771	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	46201.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	4.04	6.54	13.12	6.44	5.73	3.14	0.66	6.67	4.72	1.0	4.52	2.51
Merged-chr11-105180840-1	chr11	105180740	105180940	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	593.0	NR_027956	73431.0	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	8.08	4.78	4.56	4.02	4.09	2.82	10.3	7.26	6.29	0.5	3.01	6.27
Merged-chr5-76189978-1	chr5	76189878	76190078	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011626, intron 1 of 5)	intron (NM_011626, intron 1 of 5)	6098.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	1.62	2.26	3.42	3.62	1.23	5.64	1.66	3.79	4.33	1.51	5.53	1.88
Merged-chr16-92824190-1	chr16	92824090	92824290	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	1884.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.65	1.76	1.14	2.01	6.14	5.64	1.66	2.36	2.36	6.53	8.54	5.95
Merged-chr19-46040477-1	chr19	46040377	46040577	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-856.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.4	2.26	0.57	2.82	0.0	5.96	1.99	5.33	5.31	2.51	1.51	2.19
Merged-chr11-5060023-1	chr11	5059923	5060123	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190408)	TTS (NM_001190408)	1895.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	8.88	5.79	3.99	2.41	5.73	5.02	1.33	2.38	7.08	9.04	11.05	3.45
Merged-chr19-42100585-1	chr19	42100485	42100685	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	10150.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	8.88	4.53	9.13	4.02	8.18	1.25	5.31	3.45	0.59	0.5	0.0	0.94
Merged-chr13-73160522-1	chr13	73160422	73160622	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	68578.0	NR_126459	75361.0	Mm.385732	NR_126459		4930555K05Rik	-	RIKEN cDNA 4930555K05 gene	ncRNA	3.23	7.29	12.55	5.23	4.09	0.94	3.65	6.67	5.9	3.51	5.53	3.45
Merged-chr14-33214813-1	chr14	33214713	33214913	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2010.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.44	2.01	8.56	0.0	1.64	5.64	8.3	5.13	7.08	5.02	9.04	3.13
Merged-chr6-55511803-1	chr6	55511703	55511903	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59825.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	2.42	1.01	3.42	2.41	3.27	1.25	4.65	4.09	0.39	1.51	3.01	0.94
Merged-chr11-44543648-1	chr11	44543548	44543748	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	24271.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.81	0.0	0.0	0.0	3.68	0.63	4.32	2.16	4.72	1.0	8.54	1.57
Merged-chr7-49064919-1	chr7	49064819	49065019	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	97239.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	2.02	2.01	0.0	4.02	3.68	6.27	1.66	8.58	2.75	3.51	2.51	3.45
Merged-chr7-46607480-1	chr7	46607380	46607580	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	32327.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	4.44	5.28	4.56	4.42	5.73	5.33	5.98	4.29	6.88	12.55	11.56	6.27
Merged-chr3-75517877-1	chr3	75517777	75517977	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019745, intron 7 of 7)	intron (NM_019745, intron 7 of 7)	38975.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	2.42	5.03	7.42	8.85	5.32	7.84	10.63	6.08	3.34	2.51	6.53	6.27
Merged-chr4-120845224-1	chr4	120845124	120845324	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9575.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.63	5.28	6.85	5.23	12.68	6.27	1.33	3.73	8.06	3.01	10.05	3.76
Merged-chrX-167225971-1	chrX	167225871	167226071	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16753.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	2.42	1.51	0.0	1.21	5.73	0.94	0.0	3.56	2.95	8.54	6.03	1.88
Merged-chr7-64217640-1	chr7	64217540	64217740	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018752, exon 11 of 14)	exon (NM_018752, exon 11 of 14)	11834.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	4.04	4.28	3.42	4.42	2.45	5.96	3.99	6.14	2.36	0.5	2.51	1.57
Merged-chr8-70647534-1	chr8	70647434	70647634	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12204.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.85	3.52	9.7	4.83	2.05	0.63	0.0	4.18	10.03	2.01	3.52	5.01
Merged-chr12-52503243-1	chr12	52503143	52503343	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12834.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	8.48	9.06	4.56	4.42	9.41	9.09	6.31	10.01	8.06	10.04	13.57	10.02
Merged-chr19-55257772-1	chr19	55257672	55257872	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	4403.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	2.26	1.14	2.01	0.0	4.08	1.99	3.59	2.16	6.53	2.01	0.31
Merged-chr1-153443229-1	chr1	153443129	153443329	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033162, intron 6 of 9)	RLTR40|LTR|ERVK	18020.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	1.62	4.78	3.99	4.02	8.18	5.96	2.99	6.56	3.93	2.01	8.04	0.31
Merged-chr9-78358334-1	chr9	78358234	78358434	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9865.0	NM_025274	434423.0	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	3.23	1.01	3.42	3.62	4.5	6.27	2.66	6.36	2.16	6.53	5.53	1.57
Merged-chr3-108719529-1	chr3	108719429	108719629	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029522, intron 1 of 14)	intron (NM_029522, intron 1 of 14)	2770.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	11.71	2.26	3.42	1.61	3.68	7.21	8.97	5.27	5.31	6.53	10.05	6.89
Merged-chr18-69084307-1	chr18	69084207	69084407	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62034.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	0.4	0.0	0.0	0.8	2.05	2.2	3.99	4.15	0.0	0.5	1.0	1.88
Merged-chr6-87451259-1	chr6	87451159	87451359	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22265.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	3.63	2.52	7.99	4.83	5.73	3.76	3.32	5.1	4.13	7.53	4.52	2.51
Merged-chr2-166957058-1	chr2	166956958	166957158	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111895, intron 3 of 11)	intron (NR_111895, intron 3 of 11)	7659.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	1.62	1.51	0.57	0.0	4.09	1.25	3.65	2.16	5.11	3.01	1.51	5.95
Merged-chr7-90212336-1	chr7	90212236	90212436	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53096.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	5.65	1.26	2.28	2.41	2.45	0.63	5.31	4.32	3.54	2.51	4.52	6.27
Merged-chr4-155611487-1	chr4	155611387	155611587	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177186, intron 3 of 8)	intron (NM_177186, intron 3 of 8)	10071.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	5.65	7.04	7.99	8.04	0.82	8.15	1.33	4.04	4.13	1.51	14.57	5.33
Merged-chr1-106101207-1	chr1	106101107	106101307	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70317.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	8.08	3.27	1.14	0.4	5.32	6.9	3.65	4.21	4.92	4.52	11.05	5.33
Merged-chr9-65571182-1	chr9	65571082	65571282	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	B4|SINE|B4	8905.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.42	6.04	1.71	3.22	2.86	6.27	0.33	3.62	2.56	4.02	0.5	1.25
Merged-chr2-167279216-2	chr2	167279134	167279334	+	574.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38697.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.23	3.02	0.0	3.62	5.73	3.76	1.66	4.15	6.1	8.03	5.53	3.45
Merged-chr17-31557526-1	chr17	31557426	31557626	+	574.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7247.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	2.02	1.26	2.85	1.21	4.09	2.2	3.65	4.01	4.13	3.51	1.51	1.57
Merged-chr10-68268807-1	chr10	68268707	68268907	+	574.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	9919.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.25	4.78	4.56	4.02	9.0	7.53	4.98	3.7	4.52	7.53	9.04	4.39
Merged-chr12-85385043-1	chr12	85384943	85385143	+	574.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10326.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	8.88	3.02	5.7	6.03	7.77	5.96	6.98	5.36	6.49	5.02	5.02	2.82
Merged-chr1-39917666-2	chr1	39917568	39917768	+	574.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	L1MEc|LINE|L1	16755.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.63	2.01	8.56	10.86	3.27	2.2	2.33	9.25	8.65	2.01	11.05	3.13
Merged-chr11-43568468-2	chr11	43568376	43568576	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	33086.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	7.67	7.8	3.42	4.42	2.86	4.08	4.65	4.35	2.75	10.54	4.52	9.71
Merged-chr10-63024782-1	chr10	63024682	63024882	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	270.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	2.02	2.01	7.99	4.42	6.95	4.39	9.97	4.4	5.7	3.51	11.05	7.52
Merged-chr11-83463060-1	chr11	83462960	83463160	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172797)	promoter-TSS (NM_172797)	-20.0	NM_080453	118453.0	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	5.65	5.03	5.7	9.65	8.18	7.53	8.3	5.27	7.87	9.04	10.55	8.14
Merged-chr11-77459523-1	chr11	77459423	77459623	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-4390.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.04	2.52	9.13	3.62	6.14	5.02	5.98	2.89	2.95	4.02	10.55	5.01
Merged-chrX-73568541-2	chrX	73568436	73568636	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177236, intron 20 of 20)	MER58A|DNA|hAT-Charlie	65450.0	NM_177236	320707.0	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	1.21	2.26	6.85	4.83	0.82	4.08	5.31	7.68	8.65	4.02	4.52	6.27
Merged-chr6-87553896-1	chr6	87553796	87553996	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20637.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.02	3.27	0.57	0.8	2.05	6.27	7.97	4.63	3.34	6.53	1.0	4.07
Merged-chr2-152293289-1	chr2	152293189	152293389	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	-583.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	4.04	6.54	2.85	1.21	4.91	4.7	4.65	5.38	5.31	0.5	6.53	5.33
Merged-chr10-80876199-2	chr10	80876097	80876297	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3619.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	2.02	7.04	2.28	4.42	6.95	5.33	0.66	3.39	8.85	7.53	4.02	2.51
Merged-chr7-28601222-2	chr7	28601123	28601323	+	574.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3039.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	7.27	7.04	1.71	3.62	5.32	7.53	5.65	4.29	7.87	0.5	5.53	5.64
Merged-chr17-57167226-1	chr17	57167126	57167326	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17449.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	1.21	5.53	0.57	8.04	4.5	6.9	5.31	4.65	6.49	4.52	5.53	4.39
Merged-chr8-106307790-2	chr8	106307693	106307893	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	25564.0	NR_126090	75044.0	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	5.65	7.04	11.98	5.63	3.27	9.41	4.98	6.56	6.88	4.02	7.54	9.4
Merged-chr13-55469373-1	chr13	55469273	55469473	+	574.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	5106.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	4.44	4.02	9.13	6.44	2.05	3.45	1.99	2.66	7.47	4.02	11.05	7.83
Merged-chr12-99902204-1	chr12	99902104	99902304	+	574.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	17689.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	2.02	5.28	5.7	2.41	2.05	7.53	1.33	2.75	8.46	13.05	14.57	4.07
Merged-chr18-54902020-1	chr18	54901920	54902120	+	574.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	88160.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.42	4.02	1.14	0.8	6.55	4.39	5.31	4.93	3.54	8.03	8.04	7.21
Merged-chr14-25517362-1	chr14	25517262	25517462	+	574.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-17077.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	1.62	0.5	2.85	0.8	8.18	5.33	2.99	4.23	1.57	1.0	2.51	4.07
Merged-chr6-4544758-1	chr6	4544658	4544858	+	574.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39140.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	4.44	4.02	0.57	2.82	5.32	8.78	5.31	5.02	10.42	4.52	4.02	2.82
Merged-chr4-150176700-2	chr4	150176603	150176803	+	574.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24432.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	3.23	2.26	0.57	2.01	5.32	4.7	3.32	5.16	11.21	7.53	10.05	4.7
Merged-chr5-135544601-2	chr5	135544498	135544698	+	574.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	524.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.04	7.55	5.7	9.25	2.45	2.82	5.65	6.06	9.44	3.51	10.05	5.95
Merged-chr5-64265361-1	chr5	64265261	64265461	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	35004.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.02	3.52	1.71	0.8	4.91	2.51	4.32	5.02	6.29	9.54	5.53	3.45
Merged-chr11-104467053-1	chr11	104466953	104467153	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1808.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.57	0.0	4.91	5.64	3.65	3.84	0.39	0.0	0.0	0.31
Merged-chr2-21200151-1	chr2	21200051	21200251	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	5214.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.25	4.02	5.7	7.24	2.45	6.9	5.31	3.84	7.08	6.53	5.53	5.01
Merged-chr19-36818349-1	chr19	36818249	36818449	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-15883.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	4.85	2.52	1.71	4.02	1.23	0.63	5.31	4.4	5.11	1.51	1.51	1.57
Merged-chr13-112757056-1	chr13	112756956	112757156	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43721.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.25	4.28	5.7	15.69	1.23	2.51	3.65	5.52	3.54	1.0	5.53	6.27
Merged-chr5-107611439-1	chr5	107611339	107611539	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13478.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	1.21	5.28	6.85	4.42	3.27	5.96	1.0	1.68	10.82	18.58	9.55	5.64
Merged-chr6-43384936-1	chr6	43384836	43385036	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57493.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	2.77	0.0	5.63	4.09	5.64	4.65	4.63	0.79	0.0	0.5	0.63
Merged-chr14-12289863-1	chr14	12289763	12289963	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284385, intron 3 of 4)	intron (NM_001284385, intron 3 of 4)	5660.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.81	4.28	4.56	2.41	8.59	5.33	1.0	4.63	6.1	5.52	2.01	2.51
Merged-chr16-43950157-1	chr16	43950057	43950257	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	L1M2|LINE|L1	28893.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	7.27	1.26	6.85	12.87	3.27	5.02	5.31	6.98	8.46	4.02	9.55	5.95
Merged-chr9-99096835-1	chr9	99096735	99096935	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 4 of 23)	intron (NM_029094, intron 4 of 23)	43376.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.81	3.02	5.13	1.61	0.0	2.82	5.65	5.5	6.88	4.02	3.01	4.07
Merged-chr5-142319535-1	chr5	142319435	142319635	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81962.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	4.44	3.02	7.99	3.62	5.32	8.78	2.33	5.1	8.65	8.54	8.54	4.07
Merged-chr2-131820261-1	chr2	131820161	131820361	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	27395.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	4.04	2.77	12.55	5.63	1.23	4.7	0.66	4.99	8.46	4.02	1.51	3.13
Merged-chr1-74393264-1	chr1	74393164	74393364	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	-1046.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	3.23	4.02	1.14	1.61	4.5	3.14	5.98	1.63	7.67	7.53	5.02	1.57
Merged-chr5-23851401-1	chr5	23851301	23851501	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028536)	promoter-TSS (NR_028536)	804.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	6.86	6.04	2.28	0.8	2.45	5.96	2.99	2.1	6.29	7.03	16.08	6.27
Merged-chr10-59952558-1	chr10	59952458	59952658	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-788.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.04	5.03	7.42	0.4	7.36	3.45	11.29	5.61	5.7	12.55	11.05	5.01
Merged-chr14-26438412-1	chr14	26438312	26438512	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80865.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	2.42	2.01	4.56	2.01	7.77	5.33	0.0	5.3	3.15	4.02	1.0	1.25
Merged-chr9-118726700-2	chr9	118726612	118726812	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	MIRb|SINE|MIR	15020.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.67	2.77	5.13	7.24	2.05	5.64	3.99	7.37	7.67	10.04	13.06	3.45
Merged-chr7-66427579-1	chr7	66427479	66427679	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053080)	promoter-TSS (NM_053080)	-102.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0.81	2.52	10.84	4.02	0.0	2.2	5.98	4.68	5.11	2.51	8.54	2.82
Merged-chr15-44618204-1	chr15	44618104	44618304	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1023.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	2.01	0.0	0.8	6.14	1.57	1.66	4.07	1.57	1.0	3.01	0.94
Merged-chr8-22048307-1	chr8	22048207	22048407	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007511, intron 1 of 20)	intron (NM_007511, intron 1 of 20)	11767.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	1.21	0.0	0.0	1.21	3.27	2.2	3.32	5.86	2.36	6.03	4.52	1.25
Merged-chr9-7240123-1	chr9	7240023	7240223	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32391.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	5.65	4.53	5.7	0.8	2.05	12.54	6.31	1.35	3.15	11.05	6.03	2.82
Merged-chr18-31816926-1	chr18	31816826	31817026	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028866, intron 1 of 21)	B1_Mur2|SINE|Alu	12869.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	7.27	6.04	4.56	9.25	1.64	0.94	1.66	1.57	0.98	0.5	1.51	2.82
Merged-chr16-93615637-1	chr16	93615537	93615737	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7800.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	3.23	5.79	1.14	1.61	4.91	9.09	6.64	4.71	9.44	4.02	9.04	5.64
Merged-chr18-4255692-1	chr18	4255592	4255792	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89860.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	1.21	3.27	3.99	0.8	9.41	8.47	6.31	3.2	3.93	2.51	6.53	1.57
Merged-chr13-91682951-1	chr13	91682851	91683051	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-58570.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	1.62	5.28	3.99	7.64	2.05	5.96	3.99	3.64	2.16	7.03	10.55	9.71
Merged-chr15-79440506-1	chr15	79440406	79440606	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1312.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	6.86	2.77	7.42	7.24	1.23	3.14	1.66	4.49	2.16	3.01	7.54	3.76
Merged-chr11-77214926-1	chr11	77214826	77215026	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1499.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.06	3.77	0.0	3.62	5.73	8.47	2.99	4.88	3.34	2.01	6.53	2.19
Merged-chr16-33166492-1	chr16	33166392	33166592	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-18579.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	4.04	5.03	1.14	2.01	1.64	7.84	1.33	4.26	3.93	5.02	8.04	7.21
Merged-chr6-5102523-1	chr6	5102423	5102623	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	91423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.42	4.02	10.27	1.61	5.32	18.19	1.33	4.51	8.46	0.5	3.52	3.13
Merged-chr16-43377072-1	chr16	43376972	43377172	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	43124.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	2.83	0.25	1.14	4.42	0.82	4.7	2.33	5.13	2.56	1.51	3.52	2.51
Merged-chr11-87771137-1	chr11	87771037	87771237	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172449, intron 14 of 31)	intron (NM_172449, intron 14 of 31)	10596.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	8.48	4.78	4.56	3.62	4.5	7.84	0.0	1.88	6.88	7.03	5.02	5.01
Merged-chr5-147725791-2	chr5	147725694	147725894	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010228, exon 1 of 30)	5' UTR (NM_010228, exon 1 of 30)	194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	8.48	2.52	6.28	6.84	7.77	4.7	8.97	4.04	9.64	11.05	2.01	8.14
Merged-chr6-97800118-1	chr6	97800018	97800218	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-6940.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.81	2.01	0.0	5.23	6.95	1.88	0.66	5.19	4.33	1.0	2.01	0.63
Merged-chr2-148673424-1	chr2	148673324	148673524	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019761, intron 1 of 1)	intron (NM_019761, intron 1 of 1)	783.0	NM_001110159	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	2.83	3.77	2.85	0.0	5.73	2.2	1.33	5.1	5.9	7.03	2.01	4.07
Merged-chr9-44420417-2	chr9	44420362	44420562	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12E|LTR|ERVK	-2393.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	4.85	9.81	2.28	6.03	4.5	5.96	3.65	3.53	3.74	11.55	3.01	0.63
Merged-chr7-28803400-1	chr7	28803300	28803500	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7490.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	3.23	1.76	8.56	4.02	3.68	4.08	0.0	5.41	2.95	4.02	8.04	5.33
Merged-chr18-36765373-1	chr18	36765273	36765473	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_173383, exon 3 of 4)	exon (NM_173383, exon 3 of 4)	841.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	9.29	6.54	0.0	4.02	2.86	4.39	1.33	2.58	1.38	6.03	1.51	2.82
Merged-chr5-92028900-1	chr5	92028800	92029000	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276315, intron 6 of 12)	B4|SINE|B4	13796.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.4	0.0	0.0	0.0	8.18	3.76	3.65	3.79	0.0	0.0	0.0	0.0
Merged-chr11-86117710-1	chr11	86117610	86117810	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178309, intron 14 of 19)	intron (NM_178309, intron 14 of 19)	83483.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	12.11	4.02	5.7	4.83	8.59	5.02	2.33	4.46	11.41	2.01	3.52	2.82
Merged-chr4-138062312-1	chr4	138062212	138062412	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	ORR1C2|LTR|ERVL-MaLR	64487.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.04	5.28	12.55	10.05	9.41	1.25	3.32	2.07	1.97	6.53	3.01	1.57
Merged-chr11-3104629-1	chr11	3104529	3104729	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-19392.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	8.08	4.28	5.7	6.03	6.55	1.25	4.98	20.86	0.59	1.0	3.52	0.31
Merged-chr3-87816749-1	chr3	87816649	87816849	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011832)	TTS (NM_011832)	19798.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	1.62	2.26	3.42	4.83	2.86	3.45	5.98	1.82	4.33	6.03	8.54	7.21
Merged-chr4-145156146-1	chr4	145156046	145156246	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276502, exon 18 of 69)	exon (NM_001276502, exon 18 of 69)	34520.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.25	2.01	5.7	1.61	4.91	7.53	1.33	5.44	9.83	5.52	8.04	7.21
Merged-chr6-30318601-1	chr6	30318501	30318701	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14062.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	9.69	7.8	1.71	8.04	4.91	4.39	3.99	7.91	2.36	3.51	5.02	5.33
Merged-chr6-82051797-1	chr6	82051697	82051897	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	10169.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.81	1.51	6.85	4.02	6.55	3.14	1.33	6.25	0.39	0.5	0.0	0.31
Merged-chr19-56254800-2	chr19	56254694	56254894	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33118.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	5.25	4.02	10.84	7.24	5.73	1.57	2.66	4.65	2.56	2.51	2.51	2.19
Merged-chr2-165403017-1	chr2	165402917	165403117	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2623.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	1.21	0.25	0.0	3.22	5.73	5.02	1.99	4.46	2.16	6.53	3.01	6.89
Merged-chr10-8740470-1	chr10	8740370	8740570	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	145600.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.4	1.01	4.56	0.8	1.64	2.51	2.66	4.18	8.85	1.51	3.01	1.88
Merged-chr13-90967683-1	chr13	90967583	90967783	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	44561.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	6.06	8.55	3.99	2.82	9.0	4.39	7.31	5.5	5.11	4.02	20.1	7.21
Merged-chr7-141464775-1	chr7	141464675	141464875	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-871.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	1.62	3.52	5.7	7.24	7.36	5.33	3.99	3.25	1.38	4.52	5.53	2.82
Merged-chr9-63738786-1	chr9	63738686	63738886	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	19208.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	1.62	0.75	5.7	4.83	0.82	4.08	6.31	3.48	1.97	2.01	3.01	4.39
Merged-chr1-33863394-1	chr1	33863294	33863494	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177235, intron 5 of 6)	intron (NM_177235, intron 5 of 6)	-24480.0	NM_001161816	433287.0	Mm.383632	NM_001161816		Gm15455	AA692849	predicted gene 15455	protein-coding	5.65	5.28	9.13	6.84	4.09	5.02	3.32	6.81	9.64	4.52	5.53	5.01
Merged-chr11-121800118-1	chr11	121800018	121800218	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30100.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.46	1.51	2.28	1.61	1.64	8.78	4.32	3.87	7.08	1.0	4.52	3.45
Merged-chr1-140204043-1	chr1	140203943	140204143	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20632.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	2.52	2.28	2.41	4.5	5.02	6.64	4.54	1.18	1.51	5.53	2.82
Merged-chr5-86805608-1	chr5	86805508	86805708	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177680, intron 1 of 16)	B1_Mur4|SINE|Alu	1342.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	2.02	2.01	1.14	3.62	0.82	5.02	2.33	2.89	4.13	11.05	7.54	5.01
Merged-chr19-8759723-1	chr19	8759623	8759823	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016813, intron 1 of 20)	intron (NM_016813, intron 1 of 20)	2606.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	6.86	6.29	9.13	0.0	3.68	8.47	3.99	2.38	6.69	7.03	3.01	2.19
Merged-chr8-10899459-1	chr8	10899359	10899559	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-463.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	2.42	2.01	11.98	1.21	8.59	5.02	1.66	6.0	3.54	3.51	2.51	4.07
Merged-chr12-79617536-2	chr12	79617422	79617622	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	307211.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.85	5.79	2.85	6.84	8.18	3.76	5.98	1.12	5.9	8.03	4.52	3.13
Merged-chr6-5532901-1	chr6	5532801	5533001	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36623.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.4	0.25	2.28	0.0	1.64	1.25	6.64	2.69	0.0	0.0	2.01	0.63
Merged-chr5-137856569-1	chr5	137856469	137856669	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133209, intron 2 of 4)	intron (NM_133209, intron 2 of 4)	1480.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	6.86	4.28	11.41	7.64	7.77	6.27	5.65	4.46	5.9	3.51	6.03	6.27
Merged-chr9-66880791-1	chr9	66880691	66880891	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	38914.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	3.63	3.52	1.71	2.01	1.23	4.7	0.66	4.29	2.56	4.02	3.01	2.82
Merged-chr2-129307498-1	chr2	129307398	129307598	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	2474.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.23	0.5	4.56	2.41	10.64	3.45	2.99	1.65	0.98	10.54	3.01	7.83
Merged-chr4-115085770-2	chr4	115085660	115085860	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2948.0	NM_001164558	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	2.02	1.51	3.42	9.25	7.36	4.08	1.33	4.37	4.72	3.51	4.02	5.01
Merged-chr7-132466098-1	chr7	132465998	132466198	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110300.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	2.42	2.01	0.57	0.0	2.05	5.33	3.32	4.54	3.74	2.51	4.52	1.88
Merged-chr10-81177842-2	chr10	81177726	81177926	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007907, exon 2 of 14)	exon (NM_007907, exon 2 of 14)	-1135.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	12.52	5.53	0.0	0.8	2.86	0.94	4.98	2.07	7.08	7.53	3.01	9.4
Merged-chr9-65671663-1	chr9	65671563	65671763	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4885.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.23	0.5	2.28	4.42	2.45	4.39	2.99	6.93	2.16	3.01	5.02	5.33
Merged-chr8-85038023-1	chr8	85037923	85038123	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122843, intron 1 of 24)	CpG	855.0	NM_001122843	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	6.06	4.02	6.28	5.23	3.27	4.7	7.31	4.71	3.93	7.03	7.03	3.76
Merged-chr10-117832892-1	chr10	117832792	117832992	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	13082.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.25	2.52	2.85	1.61	6.55	4.08	5.31	4.4	3.15	3.51	0.5	5.33
Merged-chr5-45669095-1	chr5	45668995	45669195	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	613.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	1.62	1.01	5.13	1.21	5.73	3.14	5.65	3.67	6.49	9.04	7.03	5.64
Merged-chr12-84030745-1	chr12	84030645	84030845	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7634.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	6.86	2.26	2.28	1.61	3.27	11.92	3.32	5.92	4.92	5.02	1.51	4.39
Merged-chr13-49102369-1	chr13	49102269	49102469	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 3 of 29)	RMER16_Mm|LTR|ERVK	45959.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	1.62	4.53	7.42	8.04	6.95	6.9	5.31	3.62	5.9	13.56	2.51	6.58
Merged-chr9-99492969-1	chr9	99492869	99493069	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	22548.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.44	1.26	3.99	3.22	9.41	5.64	3.99	4.15	4.33	1.51	1.51	3.13
Merged-chr5-75067097-1	chr5	75066997	75067197	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8504.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	3.23	2.77	0.57	0.0	4.09	6.27	2.33	5.5	1.77	4.02	2.51	1.88
Merged-chr2-53005425-1	chr2	53005325	53005525	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	147557.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	1.62	2.52	0.0	6.84	3.27	5.02	3.99	5.21	2.56	2.51	1.0	2.19
Merged-chr15-75993738-1	chr15	75993638	75993838	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177922)	promoter-TSS (NM_177922)	-31.0	NM_177922	332110.0	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	3.63	2.52	0.57	2.82	6.95	6.27	1.0	4.29	2.36	3.01	3.01	5.95
Merged-chr4-74310188-1	chr4	74310088	74310288	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	58309.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.81	3.27	1.14	4.83	2.45	5.33	6.31	5.78	6.29	2.01	3.01	0.31
Merged-chr1-148731603-1	chr1	148731503	148731703	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1190836.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.04	2.77	10.84	4.42	1.64	5.02	3.99	6.98	4.33	2.51	4.52	2.19
Merged-chr18-84846671-1	chr18	84846571	84846771	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4667.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.23	5.03	1.14	0.0	7.36	3.14	0.66	4.12	1.97	4.52	5.02	2.19
Merged-chr6-29179342-1	chr6	29179242	29179442	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101443, intron 1 of 4)	CpG	242.0	NM_001101443	101359.0	Mm.22818	NM_001101443	ENSMUSG00000079654	Prrt4	AW455481|D330027H18Rik	proline-rich transmembrane protein 4	protein-coding	1.62	4.28	3.42	2.41	5.32	2.2	4.32	3.14	4.72	5.02	0.0	1.57
Merged-chr6-124901967-1	chr6	124901867	124902067	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9738.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	3.23	6.29	2.85	0.8	0.41	4.7	3.32	3.17	1.57	2.01	1.0	3.13
Merged-chr6-54110868-1	chr6	54110768	54110968	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	MIR|SINE|MIR	70936.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	1.62	5.03	10.27	4.83	10.64	4.39	8.3	5.55	8.26	7.03	1.0	0.63
Merged-chr4-116644534-1	chr4	116644434	116644634	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021473, intron 2 of 8)	B3A|SINE|B2	7140.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.81	1.51	5.7	1.61	4.91	5.96	2.66	3.67	6.69	2.51	3.52	2.82
Merged-chr3-108083410-2	chr3	108083345	108083545	+	573.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289719, intron 2 of 18)	intron (NM_001289719, intron 2 of 18)	1957.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.81	3.77	3.42	5.23	4.5	4.08	2.33	5.78	7.87	6.53	3.52	2.82
Merged-chr11-109621333-2	chr11	109621230	109621430	+	573.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9941.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	5.65	6.54	1.71	4.42	5.73	6.9	4.98	5.05	3.54	3.01	3.01	4.07
Merged-chr16-18210889-2	chr16	18210803	18211003	+	573.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027843, exon 3 of 3)	non-coding (NR_027843, exon 3 of 3)	2630.0	NR_027843	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	5.65	3.77	3.42	2.41	5.32	8.47	2.99	4.21	10.82	10.04	10.55	6.27
Merged-chr9-114843725-2	chr9	114843647	114843847	+	573.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	CpG	405.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	6.86	4.78	18.25	6.44	6.55	10.98	4.32	8.92	6.69	3.01	5.53	7.21
Merged-chr13-102686514-1	chr13	102686414	102686614	+	573.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-7033.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	7.67	9.56	8.56	4.02	4.91	14.42	0.66	3.25	7.47	5.52	4.02	3.13
Merged-chr11-109875992-1	chr11	109875892	109876092	+	573.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30114.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	13.33	7.8	4.56	3.22	7.36	10.35	4.65	4.49	7.28	9.54	8.04	4.39
Merged-chr1-165154401-1	chr1	165154301	165154501	+	573.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032005, intron 1 of 7)	intron (NM_032005, intron 1 of 7)	6372.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	2.02	4.28	4.56	8.85	6.55	3.45	3.99	6.36	6.69	4.52	7.03	4.39
Merged-chr9-101159545-1	chr9	101159445	101159645	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161362, intron 6 of 13)	intron (NM_001161362, intron 6 of 13)	39528.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	3.63	5.53	7.99	6.84	0.82	5.96	5.31	5.3	5.7	1.0	4.52	4.39
Merged-chr5-134394818-1	chr5	134394718	134394918	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081462, intron 9 of 29)	intron (NM_001081462, intron 9 of 29)	61444.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	4.44	3.77	21.11	2.41	6.14	6.9	3.99	5.05	5.11	4.52	5.53	4.39
Merged-chr16-45192794-1	chr16	45192694	45192894	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-31543.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	5.65	6.29	3.42	4.02	5.73	5.33	3.32	7.32	10.42	4.02	2.01	3.45
Merged-chr11-43383215-2	chr11	43383097	43383297	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8736.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	4.04	5.03	5.13	6.44	8.59	9.09	0.66	2.83	7.47	9.04	7.54	6.58
Merged-chr4-152124679-2	chr4	152124561	152124761	+	573.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207689, intron 7 of 9)	ORR1A3-int|LTR|ERVL-MaLR	4264.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	4.85	4.53	10.84	2.82	6.14	8.78	3.65	5.94	5.11	4.02	9.04	5.95
Merged-chr2-73278686-1	chr2	73278586	73278786	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6760.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	2.42	6.04	5.7	9.25	2.45	7.84	7.97	5.07	4.92	7.53	14.57	3.13
Merged-chr5-135397125-1	chr5	135397025	135397225	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2579.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.23	3.27	2.28	3.62	6.95	5.96	1.66	3.93	11.01	2.51	4.52	2.82
Merged-chr2-27030828-2	chr2	27030727	27030927	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2829.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	3.63	4.53	6.85	2.01	1.23	13.8	6.31	2.36	6.29	6.03	12.56	7.83
Merged-chr17-5202033-1	chr17	5201933	5202133	+	573.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206959.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.44	3.02	4.56	6.84	11.45	6.27	4.32	5.66	8.06	9.54	10.55	5.33
Merged-chr11-115143841-1	chr11	115143741	115143941	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-9849.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.81	0.5	2.85	1.61	6.14	4.7	4.32	4.99	4.33	8.54	4.52	5.01
Merged-chr15-78340232-3	chr15	78340133	78340333	+	573.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358854, intron 5 of 14)	intron (NM_001358854, intron 5 of 14)	-8366.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	3.63	6.79	10.27	6.44	5.73	6.59	2.66	4.91	7.87	3.51	10.55	10.34
Merged-chr16-24275102-3	chr16	24274993	24275193	+	573.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118257.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	8.48	3.77	11.98	9.25	2.86	12.86	5.65	4.01	8.26	4.02	11.56	3.45
Merged-chr4-130803010-2	chr4	130802923	130803123	+	573.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	10486.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.23	4.02	4.56	5.63	5.73	1.57	2.99	6.62	6.49	5.02	7.54	5.01
Merged-chr17-26451757-1	chr17	26451657	26451857	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36792.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.85	1.51	3.99	5.63	0.82	6.9	1.33	2.83	9.05	10.04	8.54	5.33
Merged-chr2-101782172-1	chr2	101782072	101782272	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	MTD|LTR|ERVL-MaLR	15535.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.62	4.02	0.0	2.41	5.73	2.51	7.31	3.79	5.11	7.53	10.55	6.89
Merged-chr7-129772008-1	chr7	129771908	129772108	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	180145.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.06	4.28	7.99	0.4	2.45	4.7	1.0	5.07	0.39	1.0	2.01	3.13
Merged-chr13-35740401-1	chr13	35740301	35740501	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009881, intron 3 of 9)	intron (NM_009881, intron 3 of 9)	-1001.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	8.08	8.05	11.41	1.61	6.14	10.35	5.98	5.75	11.6	10.54	5.02	5.64
Merged-chr18-39587056-1	chr18	39586956	39587156	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99811.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.62	0.25	3.99	1.21	1.23	4.7	1.99	3.34	2.56	2.51	2.51	1.88
Merged-chr18-70613577-1	chr18	70613477	70613677	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	45285.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	2.02	5.79	5.7	8.04	6.14	2.51	6.64	4.63	7.87	5.02	18.59	5.33
Merged-chr7-106236414-1	chr7	106236314	106236514	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21074.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	1.62	0.5	10.27	8.45	2.86	0.94	5.65	4.18	4.13	4.52	7.54	7.83
Merged-chr11-104590272-1	chr11	104590172	104590372	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12991.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	6.46	8.8	3.42	0.8	8.59	1.57	1.99	1.74	5.7	4.52	5.02	5.95
Merged-chr6-127149178-1	chr6	127149078	127149278	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040274)	promoter-TSS (NR_040274)	-211.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	4.85	6.29	11.41	4.02	4.5	5.96	1.66	4.6	4.52	4.52	7.03	0.94
Merged-chr9-107909058-1	chr9	107908958	107909158	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	2169.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.81	1.01	0.0	0.0	2.45	2.2	1.0	2.44	9.83	7.53	9.55	2.82
Merged-chr8-69118989-1	chr8	69118889	69119089	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21964.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	5.25	2.52	7.42	5.23	2.86	2.2	5.31	3.31	16.13	7.53	2.51	3.76
Merged-chr12-100764919-1	chr12	100764819	100765019	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14138.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	3.23	7.04	1.14	3.62	5.32	4.08	3.32	6.81	5.51	6.03	5.02	6.27
Merged-chr4-148709658-1	chr4	148709558	148709758	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	66341.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.63	4.78	3.42	4.83	3.27	4.39	4.32	6.84	10.23	1.51	3.52	2.51
Merged-chr2-26663742-1	chr2	26663642	26663842	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7540.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	7.67	3.77	3.42	7.24	4.5	1.57	0.0	0.5	6.29	2.51	5.02	2.19
Merged-chr15-76196345-2	chr15	76196254	76196454	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-644.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.85	2.52	1.14	0.8	4.91	8.15	1.0	3.08	9.05	9.04	5.02	7.21
Merged-chr12-85688068-1	chr12	85687968	85688168	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 1 of 2)	intron (NM_016767, intron 1 of 2)	1348.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.85	4.78	1.14	6.44	8.18	5.64	1.33	2.38	6.29	11.55	11.56	5.95
Merged-chr9-120496861-2	chr9	120496780	120496980	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4274.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	5.65	5.03	6.28	2.82	8.18	6.27	2.66	5.33	8.85	8.54	7.03	10.96
Merged-chr9-78073556-2	chr9	78073453	78073653	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	21595.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	11.31	6.54	2.28	9.65	6.14	4.7	12.29	2.58	2.36	10.04	5.02	3.76
Merged-chr15-51911933-2	chr15	51911838	51912038	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34497.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	3.23	8.05	2.28	8.85	5.32	6.9	5.31	3.0	7.08	6.53	13.06	3.76
Merged-chr3-83789935-1	chr3	83789835	83790035	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	23614.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	3.63	3.27	0.57	3.62	13.09	5.64	5.31	3.84	1.77	6.03	6.03	4.7
Merged-chrY-90737651-1	chrY	90737551	90737751	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	17399.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.03	7.67	5.02	2.51	6.58
Merged-chr4-41353128-1	chr4	41353028	41353228	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1165.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	1.62	4.02	3.42	8.04	2.45	5.33	2.66	5.47	5.51	8.54	9.55	9.4
Merged-chr9-75410909-1	chr9	75410809	75411009	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015806)	promoter-TSS (NM_015806)	725.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	2.42	4.02	2.28	0.8	0.82	0.63	0.66	2.36	6.49	3.51	1.0	4.7
Merged-chr5-31292548-1	chr5	31292448	31292648	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1434.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	11.71	0.75	8.56	5.23	6.14	3.76	6.98	3.45	3.34	3.51	10.05	11.28
Merged-chr8-33654153-1	chr8	33654053	33654253	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	915.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.23	0.25	5.7	4.83	6.95	6.59	6.64	3.36	7.28	9.54	7.03	5.64
Merged-chr8-115689292-1	chr8	115689192	115689392	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17602.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	1.62	1.51	0.0	2.01	6.55	2.82	2.66	6.39	0.2	0.0	0.0	0.0
Merged-chr5-98185949-1	chr5	98185849	98186049	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153823)	promoter-TSS (NR_153823)	35.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	0.4	2.52	1.14	0.4	2.86	0.63	4.32	4.21	2.36	1.0	3.52	6.58
Merged-chr15-82998959-1	chr15	82998859	82999059	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	24179.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.04	1.01	3.42	4.02	6.55	4.39	5.31	3.84	8.65	9.04	4.02	3.76
Merged-chr17-26481140-1	chr17	26481040	26481240	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27332.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.21	3.27	4.56	4.02	6.95	8.78	0.66	3.0	9.64	10.04	4.52	3.13
Merged-chr2-165448640-1	chr2	165448540	165448740	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_054055, exon 2 of 13)	exon (NM_054055, exon 2 of 13)	24557.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	0.0	2.26	0.57	2.41	8.18	3.14	1.66	5.13	6.69	6.03	4.02	4.07
Merged-chr9-41052219-1	chr9	41052119	41052319	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	B1_Mur1|SINE|Alu	27287.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.0	1.26	3.42	1.61	2.05	3.76	1.99	2.02	10.42	6.03	9.55	4.07
Merged-chr6-72344651-1	chr6	72344551	72344751	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_138592, intron 1 of 12)	intron (NM_138592, intron 1 of 12)	524.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	7.27	6.54	13.12	1.61	7.36	9.09	3.65	10.04	10.42	3.01	6.53	6.27
Merged-chrX-109198422-1	chrX	109198322	109198522	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037917, exon 2 of 2)	exon (NM_001037917, exon 2 of 2)	1666.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	2.42	2.26	5.13	2.41	4.09	3.45	5.31	4.04	5.51	4.02	3.52	3.76
Merged-chr19-34752911-1	chr19	34752811	34753011	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5800.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.85	3.02	5.7	1.61	2.45	5.02	3.99	5.94	3.54	0.5	4.02	3.13
Merged-chr3-84703538-1	chr3	84703438	84703638	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177260, exon 7 of 7)	3' UTR (NM_177260, exon 7 of 7)	37346.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.81	1.51	2.28	4.02	4.09	4.39	4.65	8.1	1.77	0.5	4.52	2.51
Merged-chr10-19956118-1	chr10	19956018	19956218	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	URR1B|DNA|hAT-Charlie	21592.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.44	1.01	4.56	2.82	7.77	7.21	2.33	2.97	7.08	1.0	8.04	0.63
Merged-chr5-32073564-1	chr5	32073464	32073664	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-62908.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.65	1.26	8.56	4.83	5.73	5.64	2.33	4.79	1.57	3.01	9.04	1.25
Merged-chr1-125470450-1	chr1	125470350	125470550	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-34723.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	1.21	7.8	2.28	9.65	3.68	2.82	1.0	3.48	8.46	5.02	10.05	3.13
Merged-chr1-23434642-1	chr1	23434542	23434742	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-51467.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	3.63	6.04	6.28	7.64	2.05	0.63	1.99	2.05	5.11	5.52	4.52	6.27
Merged-chr10-44698180-1	chr10	44698080	44698280	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-239432.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.25	5.53	5.7	2.41	4.5	3.76	8.3	4.35	5.9	4.52	7.54	5.01
Merged-chr18-20704302-1	chr18	20704202	20704402	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 4 of 8)	intron (NM_019737, intron 4 of 8)	-39042.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	1.62	3.52	3.42	0.8	10.64	5.33	2.66	5.16	0.39	2.01	3.52	3.76
Merged-chr2-26586775-1	chr2	26586675	26586875	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164564, intron 1 of 8)	CpG	145.0	NM_001164564	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	8.48	7.8	7.42	0.8	4.5	7.21	1.33	4.71	7.08	5.52	4.52	5.33
Merged-chr2-31128126-1	chr2	31128026	31128226	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	MIR|SINE|MIR	13882.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	3.63	4.02	0.0	0.8	1.64	7.84	5.98	3.48	6.1	1.51	5.02	3.76
Merged-chr19-6920867-1	chr19	6920767	6920967	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	941.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	8.48	7.29	0.57	2.41	6.14	5.96	5.65	2.02	11.8	5.02	4.02	6.89
Merged-chr16-13239130-1	chr16	13239030	13239230	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17351.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	2.42	2.77	7.99	8.04	3.68	4.7	2.66	4.37	3.74	4.02	6.03	3.76
Merged-chr2-164074667-1	chr2	164074567	164074767	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021420, intron 1 of 10)	MIR|SINE|MIR	489.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	2.42	6.54	0.57	2.41	5.73	5.02	2.99	4.93	5.9	1.0	4.02	3.13
Merged-chr3-30875210-1	chr3	30875110	30875310	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	Lx9|LINE|L1	19260.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	1.62	1.01	2.28	4.02	2.05	0.63	6.98	7.71	2.95	1.0	10.05	2.19
Merged-chr12-111447213-1	chr12	111447113	111447313	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	4552.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.25	7.55	0.57	0.0	5.73	6.9	3.99	6.76	6.49	11.05	10.55	3.76
Merged-chr13-58453766-1	chr13	58453666	58453866	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50423.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.4	5.28	5.7	4.42	3.68	3.76	2.99	6.11	11.41	5.52	5.53	8.77
Merged-chr3-137950019-1	chr3	137949919	137950119	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	RSINE1|SINE|B4	31464.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	1.21	4.78	2.85	1.21	2.05	7.53	0.66	4.04	5.51	6.03	2.01	2.51
Merged-chr5-121946046-1	chr5	121945946	121946146	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	97049.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	6.06	2.52	1.71	0.8	7.36	5.33	2.33	3.5	4.72	4.02	3.52	2.82
Merged-chr3-88686266-1	chr3	88686166	88686366	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151827, intron 1 of 13)	CpG	479.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	14.54	8.05	6.28	8.04	11.45	10.03	2.33	8.72	9.83	9.54	8.54	16.6
Merged-chr19-5050515-1	chr19	5050415	5050615	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145495)	promoter-TSS (NM_145495)	-293.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	3.63	6.29	3.42	3.22	6.14	4.7	5.31	4.21	5.7	0.0	1.51	4.39
Merged-chr5-105701148-1	chr5	105701048	105701248	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	338.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.04	2.77	9.7	10.05	6.55	7.84	8.64	3.22	8.85	13.05	8.54	4.7
Merged-chr4-142081116-1	chr4	142081016	142081216	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-3182.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	2.42	1.01	4.56	0.8	2.45	2.51	4.32	3.22	4.72	2.01	3.52	9.08
Merged-chr5-43293761-1	chr5	43293661	43293861	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58407.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	7.27	0.0	4.56	1.61	6.14	1.57	0.0	4.65	2.56	1.0	2.01	2.51
Merged-chr13-113340806-1	chr13	113340706	113340906	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131147.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.4	0.25	0.0	0.4	5.32	6.27	4.32	5.41	7.28	6.03	6.03	1.57
Merged-chr9-46119306-1	chr9	46119206	46119406	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	106486.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	3.23	2.77	6.85	1.61	1.64	8.47	2.66	4.01	3.15	4.52	2.51	5.01
Merged-chr11-86578049-1	chr11	86577949	86578149	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6109.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	6.06	3.52	5.13	2.41	4.5	4.39	1.33	3.67	8.06	9.04	7.54	10.34
Merged-chr5-147389151-1	chr5	147389051	147389251	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010229, intron 1 of 23)	L1ME2|LINE|L1	11338.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.81	1.51	2.28	1.61	3.27	5.33	2.33	7.29	2.56	2.01	5.53	0.63
Merged-chr8-125084068-2	chr8	125083946	125084146	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	29851.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.23	4.02	3.42	1.21	2.45	2.2	3.32	3.03	7.67	6.53	5.53	4.07
Merged-chr11-103375969-1	chr11	103375869	103376069	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 7 of 11)	PB1D10|SINE|Alu	-12277.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.63	7.55	7.99	1.61	8.59	2.82	1.33	5.61	4.13	4.02	4.02	3.76
Merged-chr2-120478843-2	chr2	120478754	120478954	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109761, intron 1 of 20)	B3|SINE|B2	1945.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	6.86	2.26	2.85	5.23	2.45	6.59	4.65	4.6	6.49	3.01	14.57	7.21
Merged-chr7-45450073-1	chr7	45449973	45450173	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030678, intron 12 of 15)	B3|SINE|B2	9813.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	14.94	7.29	0.0	5.23	4.09	6.59	0.66	4.12	8.46	2.51	4.52	6.89
Merged-chr2-73053266-1	chr2	73053166	73053366	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-72820.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.81	0.5	0.57	0.8	0.82	0.0	4.32	0.81	2.95	1.51	2.01	2.19
Merged-chr18-61082304-1	chr18	61082204	61082404	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008809, intron 22 of 22)	intron (NM_008809, intron 22 of 22)	-23268.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	2.26	2.28	1.61	3.27	1.25	0.33	0.03	7.28	2.51	4.52	8.14
Merged-chr3-96593507-1	chr3	96593407	96593607	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027241, intron 1 of 7)	intron (NM_027241, intron 1 of 7)	674.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	4.44	5.79	0.0	6.84	4.91	4.7	5.31	4.18	3.93	11.05	1.51	5.33
Merged-chr15-5244793-1	chr15	5244693	5244893	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-606.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.63	5.03	5.13	12.07	6.14	2.82	4.65	5.5	6.49	5.52	4.02	11.28
Merged-chr17-5566900-1	chr17	5566800	5567000	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74300.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.81	1.01	3.42	0.0	4.91	4.7	0.66	2.83	4.92	2.51	4.52	0.63
Merged-chr5-134456113-1	chr5	134456013	134456213	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081465, exon 1 of 30)	5' UTR (NM_001081465, exon 1 of 30)	149.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	4.04	2.01	8.56	1.21	3.27	5.02	1.33	4.4	6.1	4.02	8.54	3.13
Merged-chr8-26981072-1	chr8	26980972	26981172	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3736.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	7.27	5.53	5.7	1.61	6.95	9.09	6.31	0.81	3.93	4.52	1.0	2.82
Merged-chr5-36596414-1	chr5	36596314	36596514	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-10188.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.44	2.01	6.85	6.84	4.91	7.53	9.3	3.22	6.49	12.05	5.53	4.7
Merged-chr2-142935231-1	chr2	142935131	142935331	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32266.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.0	0.0	0.0	0.0	1.23	2.51	4.98	4.54	2.16	7.03	5.53	4.07
Merged-chr6-120531919-1	chr6	120531819	120532019	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-620.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0.4	3.52	5.7	3.22	1.64	5.33	2.99	4.37	2.56	1.51	7.54	5.33
Merged-chr11-6560144-1	chr11	6560044	6560244	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190344)	promoter-TSS (NM_001190344)	-39.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	4.04	0.5	3.99	2.41	5.73	1.88	1.99	4.96	4.33	4.02	4.52	5.01
Merged-chr19-29821158-1	chr19	29821058	29821258	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8184.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	4.04	0.5	0.57	3.22	4.5	2.82	4.98	4.77	2.36	2.51	8.54	6.27
Merged-chr13-98959982-1	chr13	98959882	98960082	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	24583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.63	1.33	0.03	7.28	4.52	10.05	1.88
Merged-chr11-94317725-1	chr11	94317625	94317825	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361574, intron 1 of 9)	B3|SINE|B2	4238.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	1.21	4.53	2.28	2.01	7.77	6.27	4.98	3.22	1.97	4.52	6.03	4.39
Merged-chr6-122561074-1	chr6	122560974	122561174	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009645, exon 3 of 5)	exon (NM_009645, exon 3 of 5)	7265.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.44	2.52	9.13	2.41	0.82	2.82	0.0	0.84	2.56	1.0	1.0	4.39
Merged-chr2-45232489-1	chr2	45232389	45232589	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115047.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.42	3.02	1.14	1.61	2.45	5.96	2.33	3.93	2.56	3.01	6.03	4.7
Merged-chr6-119430760-1	chr6	119430660	119430860	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13232.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	2.02	1.26	5.13	6.44	8.18	5.33	3.32	4.51	4.13	6.03	4.52	7.52
Merged-chr6-24708290-1	chr6	24708190	24708390	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24955.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.5	3.42	0.0	2.45	5.64	2.66	3.48	0.0	0.0	5.53	0.94
Merged-chr9-41999822-1	chr9	41999722	41999922	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357261, intron 26 of 42)	intron (NM_001357261, intron 26 of 42)	77391.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	6.06	7.55	3.99	4.42	4.09	5.96	5.98	4.12	4.72	4.02	8.04	14.1
Merged-chr11-89089797-1	chr11	89089697	89089897	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 3 of 3)	MLTR14|LTR|ERV1	15956.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6.1	4.02	11.56	5.95
Merged-chr4-40014813-1	chr4	40014713	40014913	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128452.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	2.02	1.76	0.0	1.61	1.64	2.82	9.3	4.85	0.2	2.51	1.51	0.63
Merged-chr16-82761594-1	chr16	82761494	82761694	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1560897.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	1.51	0.57	2.82	4.91	5.33	5.65	6.06	5.9	4.52	4.52	4.39
Merged-chr10-117843311-1	chr10	117843211	117843411	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B2_Mm2|SINE|B2	2663.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	9.69	6.04	3.99	8.85	7.36	16.31	5.65	0.73	3.54	4.52	4.52	2.82
Merged-chr2-102810005-1	chr2	102809905	102810105	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-63245.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	2.01	4.56	0.4	0.41	2.82	6.31	4.63	4.92	0.5	4.02	2.82
Merged-chr1-75559655-1	chr1	75559555	75559755	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009208)	TTS (NM_009208)	13193.0	NM_001357150	20536.0	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	2.42	2.77	2.85	1.61	11.05	5.33	2.33	4.09	6.49	7.53	8.54	4.07
Merged-chr2-102825045-1	chr2	102824945	102825145	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 11 of 13)	MTD|LTR|ERVL-MaLR	76620.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.62	1.51	0.0	7.24	4.09	0.63	1.0	0.62	11.01	6.03	9.04	2.82
Merged-chr13-56422510-3	chr13	56422441	56422641	+	572.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15814.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	2.42	4.28	6.85	13.67	9.82	13.8	5.65	4.21	5.9	6.53	10.55	7.21
Merged-chr7-122347622-2	chr7	122347501	122347701	+	572.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	58476.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.04	5.79	5.7	9.25	4.5	5.64	2.99	5.97	8.65	3.51	7.54	3.76
Merged-chr9-48586553-2	chr9	48586435	48586635	+	572.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18588.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	8.88	2.52	3.42	4.83	6.14	5.96	2.66	4.82	5.11	9.04	5.53	0.63
Merged-chr6-115227674-2	chr6	115227576	115227776	+	572.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111015, intron 1 of 12)	intron (NM_001111015, intron 1 of 12)	-11318.0	NM_001326560	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	8.08	7.04	0.0	2.41	6.14	5.64	1.99	3.67	9.64	5.52	14.07	6.89
Merged-chr13-58403805-1	chr13	58403705	58403905	+	572.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301341)	promoter-TSS (NM_001301341)	-462.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.06	2.77	5.7	5.63	5.73	1.25	5.98	1.18	4.13	3.01	5.02	4.7
Merged-chr11-120579872-2	chr11	120579772	120579972	+	572.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133796, intron 3 of 5)	intron (NM_133796, intron 3 of 5)	1748.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	7.27	7.8	2.85	3.62	4.91	8.78	7.64	4.54	8.65	6.03	4.02	5.33
Merged-chr2-84246704-1	chr2	84246604	84246804	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	178562.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	0.0	0.0	0.0	0.82	0.0	0.33	1.35	7.67	6.53	9.55	5.64
Merged-chr4-57928011-1	chr4	57927911	57928111	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11747.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	8.08	2.77	4.56	2.41	1.23	9.72	2.66	3.22	10.82	10.54	11.56	6.27
Merged-chr12-87442761-1	chr12	87442661	87442861	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001013372)	TTS (NM_001013372)	1078.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	1.21	6.29	0.57	2.01	2.86	2.51	0.33	2.86	7.67	9.04	5.02	1.57
Merged-chr19-11081130-1	chr19	11081030	11081230	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022430)	promoter-TSS (NM_022430)	-27.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	2.83	6.29	1.71	4.02	6.55	4.08	3.99	5.33	10.03	5.52	5.02	1.88
Merged-chr14-57525523-1	chr14	57525423	57525623	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145837, exon 2 of 3)	exon (NM_145837, exon 2 of 3)	694.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	2.42	2.77	6.85	3.62	5.73	5.96	12.62	5.07	4.13	2.51	4.52	3.13
Merged-chr18-46936970-1	chr18	46936870	46937070	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15155.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	8.08	3.52	3.42	3.22	6.55	5.33	2.66	6.28	0.98	5.02	8.04	4.07
Merged-chr3-86317798-1	chr3	86317698	86317898	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077687, intron 14 of 50)	intron (NM_001077687, intron 14 of 50)	93108.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	1.62	2.01	0.0	0.0	6.14	1.88	3.32	4.74	0.0	0.0	1.0	1.88
Merged-chr4-43264576-1	chr4	43264476	43264676	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001310758, exon 39 of 39)	3' UTR (NM_001310758, exon 39 of 39)	-2583.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	1.62	1.51	1.14	2.01	4.5	5.64	3.32	6.14	3.34	2.51	2.51	5.95
Merged-chr12-82220871-1	chr12	82220771	82220971	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	50855.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	4.02	3.42	2.41	6.55	13.48	5.31	4.49	8.46	12.05	7.54	1.57
Merged-chr6-127142286-1	chr6	127142186	127142386	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-7103.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	6.06	4.53	7.99	3.62	10.23	6.27	7.31	2.78	9.44	4.52	7.54	3.45
Merged-chr12-115614407-1	chr12	115614307	115614507	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	81387.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	1.21	0.0	0.57	1.61	6.14	3.76	6.31	3.11	0.79	0.5	0.0	0.63
Merged-chr19-7267313-2	chr19	7267254	7267454	+	572.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054048)	promoter-TSS (NM_054048)	-40.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	14.54	4.78	1.71	2.01	9.82	2.82	3.65	3.67	5.7	9.04	6.03	5.95
Merged-chr11-95521738-2	chr11	95521648	95521848	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7183.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	5.25	4.53	3.42	3.22	10.64	9.72	2.66	3.93	7.08	4.02	6.03	5.64
Merged-chr9-63956070-1	chr9	63955970	63956170	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	65989.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	1.21	1.01	3.42	2.41	4.09	5.96	3.32	4.07	1.57	1.51	2.01	3.13
Merged-chr6-86405291-1	chr6	86405191	86405391	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164078, intron 1 of 11)	intron (NM_001164078, intron 1 of 11)	1072.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	6.06	8.8	2.28	4.42	11.86	4.7	5.65	5.05	4.72	13.56	5.02	2.82
Merged-chr9-123523850-2	chr9	123523755	123523955	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5898.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	7.27	5.53	5.13	1.61	5.73	4.7	2.99	4.68	8.26	5.52	10.55	2.19
Merged-chr19-53800723-1	chr19	53800623	53800823	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-91508.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	2.02	3.52	3.42	0.0	0.0	1.25	0.0	1.49	9.44	11.05	8.54	1.88
Merged-chr12-73914830-1	chr12	73914730	73914930	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	6963.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	1.62	5.53	3.42	5.23	9.0	6.9	4.65	3.84	4.33	4.52	3.52	3.45
Merged-chr16-11060821-1	chr16	11060721	11060921	+	572.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5477.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	7.67	5.79	2.28	0.0	2.05	4.39	2.66	1.26	5.11	4.02	3.01	0.31
Merged-chr16-58502732-1	chr16	58502632	58502832	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	B1F|SINE|Alu	20694.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	2.83	6.04	2.28	3.62	2.05	2.51	5.65	3.31	7.08	7.53	12.56	10.02
Merged-chr19-12488202-1	chr19	12488102	12488302	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	13794.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	3.63	4.28	10.84	5.23	6.55	5.96	3.32	3.45	5.51	3.51	5.02	1.88
Merged-chr17-32403011-2	chr17	32402945	32403145	+	572.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029458)	promoter-TSS (NR_029458)	31.0	NR_029458	664702.0	Mm.381066	NR_029458		A530088E08Rik	-	RIKEN cDNA A530088E08 gene	ncRNA	5.25	5.28	3.42	4.42	5.32	5.64	2.66	4.88	7.08	5.02	3.01	6.58
Merged-chr11-78278073-1	chr11	78277973	78278173	+	572.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-12768.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	6.06	4.02	2.85	2.01	7.36	3.76	4.32	4.65	2.95	3.01	2.51	4.7
Merged-chr11-3880040-1	chr11	3879940	3880140	+	572.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15086.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	5.25	2.01	3.99	2.82	5.32	6.9	3.65	4.21	6.49	2.51	5.02	4.39
Merged-chr15-53399288-3	chr15	53399224	53399424	+	572.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-53141.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.85	6.29	7.99	8.85	4.5	4.08	4.32	9.06	5.51	3.01	9.04	3.45
Merged-chrX-99027610-3	chrX	99027505	99027705	+	572.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14976.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	9.29	5.03	7.99	16.09	4.91	5.33	5.65	5.61	6.88	6.03	13.06	2.82
Merged-chr13-4110704-1	chr13	4110604	4110804	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39927.0	NM_134066	105349.0	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	1.62	2.26	0.0	1.21	4.5	4.7	2.66	3.53	6.69	4.52	11.05	6.89
Merged-chr16-20829285-2	chr16	20829193	20829393	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94782.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.81	3.77	3.99	4.02	4.09	4.39	0.0	3.9	2.75	3.01	4.02	3.76
Merged-chr8-117366682-1	chr8	117366582	117366782	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	17512.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.27	2.52	11.41	2.41	2.45	1.25	2.66	4.26	2.36	0.5	11.56	9.08
Merged-chr2-22789779-1	chr2	22789679	22789879	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	L1MB7|LINE|L1	15452.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.85	4.78	4.56	0.0	5.73	10.98	5.65	5.1	10.23	1.51	4.02	2.51
Merged-chr3-106448706-1	chr3	106448606	106448806	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-33725.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	2.02	8.55	2.28	9.65	1.23	2.82	0.33	1.54	4.13	3.01	9.04	6.58
Merged-chr5-115554391-1	chr5	115554291	115554491	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-5076.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.4	1.01	2.85	0.8	2.45	0.31	2.66	4.93	3.74	0.5	2.51	2.19
Merged-chr19-7505833-1	chr19	7505733	7505933	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	11395.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	6.06	2.01	1.14	5.23	0.0	3.76	4.32	3.81	6.69	4.52	1.0	1.57
Merged-chr14-13001289-1	chr14	13001189	13001389	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178210.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.0	0.25	0.0	1.61	4.09	1.25	4.65	5.38	0.98	0.0	1.0	1.57
Merged-chr13-111804397-2	chr13	111804294	111804494	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	4599.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.44	3.77	6.85	4.42	2.05	5.02	2.66	7.26	9.64	6.03	6.53	5.64
Merged-chr2-129296380-1	chr2	129296280	129296480	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	832.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	3.63	10.82	7.99	2.41	1.64	10.03	3.32	0.73	1.18	0.0	4.52	1.25
Merged-chr4-141425890-1	chr4	141425790	141425990	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013868)	TTS (NM_013868)	5111.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	2.02	4.53	7.99	4.02	1.64	5.33	3.65	3.93	3.54	7.53	10.55	7.83
Merged-chr5-135773322-1	chr5	135773222	135773422	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029659, intron 1 of 8)	RLTR40|LTR|ERVK	4979.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	6.86	3.02	5.7	8.85	6.55	6.27	1.99	9.2	5.51	6.03	5.02	2.51
Merged-chr2-142858631-1	chr2	142858531	142858731	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42833.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.65	6.54	10.84	9.25	2.45	5.02	3.99	15.31	2.95	4.52	7.03	5.01
Merged-chr8-105397991-1	chr8	105397891	105398091	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001301173, intron 2 of 15)	intron (NM_001301173, intron 2 of 15)	15511.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	8.48	5.03	2.28	11.66	3.68	5.64	1.99	3.22	5.51	4.52	4.52	2.19
Merged-chr18-68952054-1	chr18	68951954	68952154	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038051)	promoter-TSS (NR_038051)	-526.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	1.62	1.51	3.42	0.8	3.27	2.2	4.32	4.85	0.0	0.0	0.0	0.31
Merged-chr1-9703286-1	chr1	9703186	9703386	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3077.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	8.88	7.29	7.42	4.83	1.23	3.14	0.66	2.8	4.52	9.04	3.01	3.76
Merged-chr1-132982932-1	chr1	132982832	132983032	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42484.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	4.04	1.01	1.71	2.41	6.55	6.9	2.66	4.93	1.77	0.0	12.06	5.64
Merged-chr6-67056747-1	chr6	67056647	67056847	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-19340.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	6.06	5.03	0.0	0.4	2.45	5.33	1.0	2.92	3.54	1.51	8.54	0.0
Merged-chr9-114898960-1	chr9	114898860	114899060	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175380)	TTS (NM_175380)	35027.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	6.06	1.01	6.85	1.61	5.32	4.08	4.65	4.63	6.29	5.52	10.55	4.7
Merged-chr5-139795076-2	chr5	139794983	139795183	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3547.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	7.27	8.05	1.14	5.63	1.64	4.7	3.99	3.25	4.72	4.02	2.51	3.45
Merged-chr7-98194292-1	chr7	98194192	98194392	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081167, exon 2 of 2)	exon (NM_001081167, exon 2 of 2)	5183.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	4.44	3.52	5.7	8.45	2.86	5.96	2.99	5.13	6.1	3.51	11.05	6.89
Merged-chr16-36642210-1	chr16	36642110	36642310	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.81	6.04	1.14	4.42	9.41	6.59	3.32	2.69	8.46	10.54	3.52	3.45
Merged-chr4-86588373-2	chr4	86588276	86588476	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173400, intron 12 of 16)	B3|SINE|B2	-1806.0	NR_028545	100217448.0	Mm.453533	NR_028545	ENSMUSG00000088958	Scarna8	MBI-57	small Cajal body-specific RNA 8	ncRNA	1.62	5.53	6.85	4.02	6.14	5.33	0.66	5.41	10.42	7.03	8.54	4.39
Merged-chr16-97845776-1	chr16	97845676	97845876	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	5451.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	5.65	5.03	6.28	3.22	6.95	1.88	5.31	0.67	2.75	1.51	1.51	0.31
Merged-chr11-73129534-1	chr11	73129434	73129634	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 21 of 30)	intron (NM_001361245, intron 21 of 30)	8760.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	8.88	3.77	5.7	1.61	8.18	5.64	4.65	4.15	4.92	5.52	4.52	5.33
Merged-chr18-43515250-1	chr18	43515150	43515350	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76964.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.4	1.76	2.85	0.8	2.05	6.59	6.98	4.12	4.33	2.51	11.05	2.51
Merged-chr16-76563032-1	chr16	76562932	76563132	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14237.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	3.23	3.52	0.0	2.41	4.5	5.33	1.0	6.7	3.54	7.03	2.01	4.39
Merged-chr6-56489353-1	chr6	56489253	56489453	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119719.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.81	2.01	2.28	0.0	2.86	0.63	7.31	4.18	0.98	1.0	0.0	0.0
Merged-chr1-16329864-1	chr1	16329764	16329964	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189251.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0.4	4.53	0.0	8.85	4.09	3.14	6.31	4.68	9.24	1.0	3.01	3.13
Merged-chr11-108077670-1	chr11	108077570	108077770	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	80822.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	4.85	9.56	2.28	6.84	3.68	1.25	4.32	4.4	6.69	2.51	2.51	4.7
Merged-chr1-105911077-1	chr1	105910977	105911177	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	79205.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	2.02	3.52	2.28	8.04	2.45	2.51	3.32	6.0	0.59	0.5	8.04	5.64
Merged-chr18-62172114-1	chr18	62172014	62172214	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	7867.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.25	6.54	0.0	2.01	6.14	8.15	0.33	1.57	0.39	5.02	3.01	1.57
Merged-chr2-74697857-1	chr2	74697757	74697957	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013555)	promoter-TSS (NM_013555)	94.0	NM_013555	15438.0	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.81	3.52	3.42	9.25	1.64	7.53	1.33	5.64	0.98	2.01	8.04	1.57
Merged-chr8-35114188-1	chr8	35114088	35114288	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-148498.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.62	0.25	3.42	6.44	6.14	5.02	4.65	7.51	2.95	0.5	6.03	3.76
Merged-chr16-36708041-1	chr16	36707941	36708141	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	C-rich|Low_complexity|Low_complexity	14063.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	1.62	2.77	2.28	2.82	0.82	4.7	3.32	0.45	2.95	1.0	1.51	2.51
Merged-chr11-88997520-1	chr11	88997420	88997620	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1883.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.85	3.77	2.85	3.62	7.36	7.21	0.66	0.36	11.41	6.53	6.53	6.89
Merged-chr9-107645783-2	chr9	107645677	107645877	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10435.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	8.08	4.02	5.13	6.84	9.41	5.33	6.31	3.64	7.28	9.04	17.59	7.83
Merged-chr7-67494960-1	chr7	67494860	67495060	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-122102.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.42	0.0	3.99	4.42	3.27	8.78	7.64	1.99	2.36	3.51	7.03	3.13
Merged-chr10-118094012-1	chr10	118093912	118094112	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47775.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.5	0.0	0.0	1.64	0.0	0.0	1.04	9.83	4.02	7.54	8.14
Merged-chr16-29814143-2	chr16	29814035	29814235	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	164989.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	5.25	7.8	0.57	2.01	4.5	4.39	6.98	4.46	9.24	5.52	7.03	6.27
Merged-chr14-63146116-1	chr14	63146016	63146216	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007798)	TTS (NM_007798)	23654.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	1.21	5.28	1.14	6.84	6.14	5.33	2.33	7.15	6.88	7.53	3.01	2.82
Merged-chr11-72225058-1	chr11	72224958	72225158	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9466.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	2.02	6.79	3.42	2.41	4.5	0.63	0.66	3.25	7.67	8.03	9.55	1.25
Merged-chr3-116436343-1	chr3	116436243	116436443	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12311.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	2.02	3.02	6.85	5.63	6.14	6.59	2.99	4.74	5.51	4.02	5.53	4.07
Merged-chr2-119742721-1	chr2	119742621	119742821	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146125, exon 1 of 7)	exon (NM_146125, exon 1 of 7)	384.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	9.69	6.79	2.28	5.23	10.23	8.47	5.98	4.26	8.46	4.52	2.51	8.77
Merged-chr16-33306761-1	chr16	33306661	33306861	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55305.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	2.42	2.52	0.0	0.8	1.64	3.76	4.98	4.49	9.24	2.51	9.04	8.77
Merged-chr18-38233166-1	chr18	38233066	38233266	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17032.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	1.62	1.76	0.0	3.22	4.91	2.51	0.0	1.93	3.54	2.51	6.03	9.08
Merged-chr18-34380175-1	chr18	34380075	34380275	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6760.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.4	3.77	1.71	2.82	3.68	7.21	1.33	3.81	1.77	4.02	4.52	2.82
Merged-chr14-8135341-1	chr14	8135241	8135441	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	37130.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	2.42	6.79	5.7	2.41	7.77	3.45	3.99	4.96	0.79	1.0	2.01	0.94
Merged-chr16-92821820-1	chr16	92821720	92821920	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4254.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	2.26	0.0	2.82	0.82	5.64	2.33	3.53	1.18	2.01	1.0	5.33
Merged-chr7-110394190-2	chr7	110394082	110394282	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	MTC|LTR|ERVL-MaLR	172479.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	8.88	9.31	5.7	5.23	4.91	12.54	5.31	5.47	7.08	2.01	6.53	5.33
Merged-chr16-44951850-1	chr16	44951750	44951950	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027578, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	8172.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.25	7.99	0.4	0.82	4.08	10.96	4.91	6.69	4.02	3.01	1.57
Merged-chr13-75344787-1	chr13	75344687	75344887	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	254930.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.0	1.01	0.0	1.61	2.45	7.53	0.33	11.83	2.56	0.5	3.52	7.21
Merged-chr8-106603294-1	chr8	106603194	106603394	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009864)	promoter-TSS (NM_009864)	-56.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	2.42	2.26	9.13	4.42	6.95	4.39	2.33	5.05	2.36	2.01	4.02	2.19
Merged-chr5-72511368-1	chr5	72511268	72511468	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6828.0	NM_001122756	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	4.44	2.52	7.99	8.85	4.09	1.57	8.64	3.84	6.1	6.03	5.02	10.02
Merged-chr11-29190579-1	chr11	29190479	29190679	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134034, intron 4 of 15)	URR1A|DNA|hAT-Charlie	17672.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	2.42	1.51	6.85	0.8	4.09	2.82	8.3	4.99	2.16	3.01	6.03	4.39
Merged-chr2-131821121-1	chr2	131821021	131821221	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	26535.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	1.62	1.76	1.14	2.41	2.45	4.7	0.66	5.02	1.77	2.51	5.53	2.51
Merged-chrX-38455367-1	chrX	38455267	38455467	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152733, intron 1 of 9)	intron (NR_152733, intron 1 of 9)	1093.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	2.83	3.27	1.71	1.61	4.09	5.96	3.32	2.13	8.65	2.51	4.52	1.57
Merged-chr10-128335754-1	chr10	128335654	128335854	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1973.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	5.25	1.76	4.56	0.8	4.91	8.78	3.65	3.98	6.49	9.54	8.54	4.39
Merged-chr8-104371288-2	chr8	104371193	104371393	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	B1_Mur4|SINE|Alu	24514.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	6.86	6.04	3.42	3.22	3.68	9.09	2.99	3.5	8.65	8.54	10.55	3.45
Merged-chr7-75649198-2	chr7	75649107	75649307	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	193673.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	8.08	1.51	1.14	7.64	9.0	1.25	5.65	4.46	2.16	7.03	3.52	2.19
Merged-chr8-25331451-1	chr8	25331351	25331551	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25181.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	5.65	2.01	1.14	2.01	2.05	5.02	4.32	4.46	2.75	5.02	1.0	3.45
Merged-chr19-7484239-1	chr19	7484139	7484339	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	-948.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	3.23	1.26	3.42	6.03	2.86	4.7	4.32	3.87	5.51	5.02	9.55	5.64
Merged-chr2-144004346-2	chr2	144004238	144004438	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6925.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	6.46	7.29	5.13	5.23	3.27	8.78	3.32	1.4	2.16	2.51	6.53	4.7
Merged-chr2-30268648-2	chr2	30268501	30268701	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	1782.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	8.08	3.77	3.42	5.63	10.23	5.33	6.64	2.8	2.95	4.02	3.01	7.21
Merged-chr10-84162825-1	chr10	84162725	84162925	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62128.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.04	4.02	2.85	3.22	5.32	0.63	3.65	6.22	1.38	2.01	4.52	1.57
Merged-chr2-83759393-1	chr2	83759293	83759493	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	34996.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.65	2.01	2.85	4.02	4.09	7.53	2.66	13.57	0.79	1.0	2.51	0.63
Merged-chr1-128006360-1	chr1	128006260	128006460	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	96111.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	6.06	2.01	0.57	3.62	3.68	8.47	6.98	3.79	3.34	5.02	9.04	1.25
Merged-chr16-55813310-1	chr16	55813210	55813410	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	8828.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	11.31	5.53	1.14	3.22	6.55	9.09	1.33	0.34	8.85	12.55	1.0	2.51
Merged-chr5-77194114-1	chr5	77194014	77194214	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	17091.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	2.83	6.29	3.99	8.04	2.05	3.45	3.65	3.2	8.65	16.57	11.56	6.58
Merged-chr10-41602766-1	chr10	41602666	41602866	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 29 of 47)	intron (NM_001358562, intron 29 of 47)	34750.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.63	6.29	6.85	5.63	3.68	0.94	0.66	7.57	7.47	3.01	7.03	5.64
Merged-chr17-43460684-1	chr17	43460584	43460784	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42089.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	8.08	4.02	2.28	3.22	2.45	3.76	2.66	3.0	7.47	4.52	9.04	3.13
Merged-chr17-80295431-1	chr17	80295331	80295531	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360440, intron 2 of 3)	intron (NM_001360440, intron 2 of 3)	-4955.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	9.69	1.51	9.13	11.26	4.09	4.7	4.65	10.74	7.28	2.51	17.08	6.58
Merged-chr6-96114499-1	chr6	96114399	96114599	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182808, intron 1 of 4)	intron (NM_182808, intron 1 of 4)	1345.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.81	1.01	0.0	0.8	1.64	5.64	3.65	3.53	2.36	1.51	1.0	1.88
Merged-chr2-72244529-1	chr2	72244429	72244629	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355478, intron 25 of 26)	intron (NM_001355478, intron 25 of 26)	-41108.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.62	3.02	2.28	3.62	0.0	2.51	4.65	4.12	2.75	2.51	8.54	5.95
Merged-chr2-125214770-1	chr2	125214670	125214870	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079690, intron 22 of 27)	intron (NM_001079690, intron 22 of 27)	-32478.0	NM_001159646	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	2.83	0.5	0.57	0.4	4.91	5.96	0.66	3.84	3.15	2.51	3.01	1.57
Merged-chr2-128764247-1	chr2	128764147	128764347	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54056.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.23	1.51	3.42	0.8	5.32	5.64	2.33	3.64	2.75	5.52	1.51	0.0
Merged-chr18-56567124-1	chr18	56567024	56567224	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	4555.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.4	0.25	0.0	2.41	6.14	0.94	1.99	1.51	3.93	8.54	6.03	1.57
Merged-chr4-33018519-3	chr4	33018428	33018628	+	571.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027491, intron 6 of 6)	intron (NM_027491, intron 6 of 6)	12795.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	5.25	7.8	0.57	3.62	3.68	4.39	1.33	10.04	7.87	9.04	9.55	4.7
Merged-chr2-155624967-1	chr2	155624867	155625067	+	571.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085378, intron 21 of 41)	intron (NM_001085378, intron 21 of 41)	2087.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	4.85	13.83	6.28	2.82	6.95	14.42	6.64	4.6	4.92	8.03	2.01	6.89
Merged-chr16-21631832-2	chr16	21631719	21631919	+	571.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	62846.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	1.21	1.51	0.57	2.82	4.91	10.98	6.31	4.01	7.87	10.04	9.04	8.77
Merged-chr11-97547243-1	chr11	97547143	97547343	+	571.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	27883.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.83	2.52	1.14	4.02	2.86	6.27	6.31	2.66	6.29	6.53	11.05	9.71
Merged-chr17-71874314-1	chr17	71874214	71874414	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007439, intron 27 of 28)	intron (NM_007439, intron 27 of 28)	92367.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	5.65	2.52	2.85	6.44	3.27	4.08	3.65	4.49	0.79	1.51	2.51	0.94
Merged-chr1-166844735-1	chr1	166844635	166844835	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	154995.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	1.62	2.52	0.57	0.8	5.32	4.39	2.99	5.47	7.47	4.02	10.05	1.57
Merged-chr2-18608370-1	chr2	18608270	18608470	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64092.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	5.65	5.53	0.57	1.61	6.55	5.64	6.64	4.82	7.87	1.51	3.52	5.64
Merged-chr4-87893167-2	chr4	87893061	87893261	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-86838.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.65	2.52	2.28	1.21	6.14	3.14	3.65	5.05	7.47	10.04	8.04	6.89
Merged-chr2-79618772-1	chr2	79618672	79618872	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16653.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	11.31	2.52	1.14	2.41	6.55	4.7	4.32	4.26	3.93	3.51	7.03	5.33
Merged-chr11-100640229-2	chr11	100640126	100640326	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177790, intron 1 of 7)	CpG	10467.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	3.23	3.77	3.42	0.0	8.18	5.33	2.99	5.52	9.83	3.51	9.55	6.89
Merged-chr9-40548025-1	chr9	40547925	40548125	+	571.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16642.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.85	3.27	4.56	0.0	5.73	10.98	4.32	3.25	13.18	11.05	5.02	6.58
Merged-chr17-57172494-1	chr17	57172394	57172594	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	21687.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	4.85	9.06	3.99	0.8	7.36	4.39	5.98	4.12	1.38	3.01	1.0	1.25
Merged-chr3-121536017-1	chr3	121535917	121536117	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3673.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	3.23	3.52	2.28	3.22	4.09	5.02	2.33	6.03	2.95	13.56	4.52	1.88
Merged-chr14-51242991-2	chr14	51242864	51243064	+	571.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13148.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	5.65	4.02	10.27	10.46	5.32	1.57	5.31	5.92	2.36	0.5	2.01	2.19
Merged-chr9-58226449-1	chr9	58226349	58226549	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	5299.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	4.85	4.02	6.28	3.22	13.5	7.53	2.99	3.5	7.47	13.05	9.04	5.95
Merged-chr5-28419905-1	chr5	28419805	28420005	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028234)	TTS (NM_028234)	-47079.0	NR_015562	654796.0	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	1.62	2.01	3.42	3.62	8.18	3.14	1.33	5.94	0.0	1.51	0.5	1.25
Merged-chr11-68092178-1	chr11	68092078	68092278	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	125720.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	8.08	8.55	3.42	3.22	1.64	11.6	0.0	0.48	10.62	9.54	9.04	2.51
Merged-chr8-123982390-1	chr8	123982290	123982490	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019552, intron 1 of 12)	intron (NM_019552, intron 1 of 12)	732.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	2.42	1.51	0.0	2.41	1.23	6.59	7.31	4.26	2.36	1.51	3.01	1.57
Merged-chr6-73247679-1	chr6	73247579	73247779	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-826.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	8.48	7.55	7.99	3.22	11.05	4.08	1.33	3.76	8.65	15.06	5.53	2.82
Merged-chr11-60186208-1	chr11	60186108	60186308	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009021, exon 3 of 6)	exon (NM_009021, exon 3 of 6)	14409.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	2.42	2.52	2.28	0.8	3.68	5.96	2.33	0.48	0.79	0.5	1.0	2.51
Merged-chr5-123129131-1	chr5	123129031	123129231	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3498.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	1.21	4.28	3.42	3.62	7.36	2.2	6.64	3.79	6.1	3.01	7.03	2.51
Merged-chr5-113035907-1	chr5	113035807	113036007	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20369.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	1.62	5.03	13.69	1.61	5.32	2.2	4.65	6.31	6.1	1.51	3.52	4.39
Merged-chr12-73111966-1	chr12	73111866	73112066	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362272, intron 2 of 2)	CpG	1279.0	NM_011382	20474.0	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	3.63	1.51	2.28	3.62	4.09	6.27	2.66	0.73	0.98	1.0	3.01	4.7
Merged-chr13-58479348-1	chr13	58479248	58479448	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-76005.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.81	0.25	1.14	0.8	2.45	1.57	5.31	4.43	2.16	4.02	0.5	2.82
Merged-chr16-24150698-1	chr16	24150598	24150798	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-68008.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	4.85	2.26	6.85	2.01	8.59	2.51	4.32	4.4	0.59	2.01	1.0	4.07
Merged-chr9-62952885-1	chr9	62952785	62952985	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	27994.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	8.88	3.52	5.7	6.44	8.59	10.35	4.32	2.52	7.87	3.51	6.03	0.94
Merged-chr7-127129196-1	chr7	127129096	127129296	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-7167.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	4.28	0.0	1.21	3.27	2.82	2.66	3.45	7.47	1.51	8.04	5.01
Merged-chr4-33241414-1	chr4	33241314	33241514	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7373.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	7.67	7.8	5.13	2.82	3.27	14.42	1.66	0.64	2.16	2.01	2.01	6.58
Merged-chr18-11676777-1	chr18	11676677	11676877	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045527, intron 3 of 17)	PB1D9|SINE|Alu	19428.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.25	7.04	7.42	14.88	4.91	4.08	11.63	4.88	8.46	8.03	5.02	7.21
Merged-chr11-78627451-1	chr11	78627351	78627551	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	69974.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	4.04	1.51	2.28	3.22	4.91	5.96	0.33	3.9	4.33	1.0	4.02	5.64
Merged-chr6-133973421-1	chr6	133973321	133973521	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62279.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.23	1.26	0.0	0.0	1.64	0.63	1.33	2.1	7.67	1.51	4.52	7.52
Merged-chr10-30771780-1	chr10	30771680	30771880	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001358841, exon 2 of 16)	5' UTR (NM_001358841, exon 2 of 16)	31546.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.85	0.5	3.42	0.8	6.95	3.76	5.31	5.07	2.95	4.52	0.5	2.51
Merged-chr7-80530924-1	chr7	80530824	80531024	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042527, intron 1 of 21)	intron (NM_001042527, intron 1 of 21)	4074.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	1.62	2.26	5.13	4.42	9.82	5.33	2.99	4.82	7.47	3.01	5.53	1.57
Merged-chr6-31073241-1	chr6	31073141	31073341	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10148.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	4.85	2.52	1.71	0.0	1.64	2.51	1.33	2.33	3.34	4.02	4.02	0.63
Merged-chr6-116675032-2	chr6	116674926	116675126	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1190.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.67	4.28	2.28	1.61	4.09	5.02	1.66	3.87	7.47	6.03	10.55	4.07
Merged-chr1-64527770-1	chr1	64527670	64527870	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5034.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	1.62	3.77	9.13	4.83	3.27	6.27	1.99	5.78	6.1	3.01	7.54	4.7
Merged-chr8-123117341-1	chr8	123117241	123117441	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_170684)	promoter-TSS (NM_170684)	-33.0	NM_170684	102278.0	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	7.67	5.03	6.28	3.62	2.05	5.33	1.99	3.22	4.72	2.01	6.03	4.07
Merged-chr11-97641911-1	chr11	97641811	97642011	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-12195.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	7.27	3.27	3.42	5.63	4.5	5.96	2.33	5.44	4.33	2.01	5.02	0.94
Merged-chr4-105258313-1	chr4	105258213	105258413	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100966.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.81	0.5	2.28	1.61	1.64	0.31	4.98	4.15	0.2	2.51	3.01	0.63
Merged-chr17-45478657-1	chr17	45478557	45478757	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3719.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	2.83	8.05	8.56	2.41	4.91	4.08	2.33	8.38	7.47	5.52	12.06	4.07
Merged-chr19-45737051-1	chr19	45736951	45737151	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010205, exon 5 of 5)	exon (NM_010205, exon 5 of 5)	5833.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	5.25	9.56	6.85	4.02	3.68	5.64	3.32	4.91	1.77	4.02	4.52	2.19
Merged-chr17-66519357-1	chr17	66519257	66519457	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_024448, exon 1 of 6)	exon (NM_024448, exon 1 of 6)	313.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	8.88	15.59	16.54	12.07	11.45	15.37	16.94	7.79	18.29	22.09	15.07	10.34
Merged-chr1-191177027-1	chr1	191176927	191177127	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	6306.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.06	4.02	4.56	3.22	2.45	5.33	4.32	1.01	4.52	13.56	1.0	1.88
Merged-chr19-16382559-1	chr19	16382459	16382659	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008139, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-53108.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.04	6.29	10.27	10.46	4.91	4.08	3.32	3.95	6.49	5.02	4.52	5.95
Merged-chr1-132416842-1	chr1	132416742	132416942	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-611.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	4.44	3.52	2.28	4.83	7.36	3.14	3.32	4.88	3.34	3.01	7.54	2.19
Merged-chr14-20804482-1	chr14	20804382	20804582	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10243.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	5.65	1.76	0.57	1.61	4.91	5.33	3.65	5.75	3.93	1.51	2.01	2.51
Merged-chr4-117191430-1	chr4	117191330	117191530	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8806.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	5.25	3.02	0.0	6.44	2.86	14.74	1.99	7.01	2.95	1.0	3.01	1.88
Merged-chr9-22259830-1	chr9	22259730	22259930	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181419)	promoter-TSS (NM_181419)	65.0	NM_181419	235048.0	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	0.81	7.04	5.7	0.8	3.27	4.7	5.65	4.12	4.92	3.51	3.52	5.01
Merged-chr13-73263634-1	chr13	73263534	73263734	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018885, intron 1 of 5)	intron (NM_018885, intron 1 of 5)	3137.0	NM_018885	50916.0	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois homeobox 4	protein-coding	0.81	2.01	5.7	7.24	6.14	0.63	2.66	5.13	4.13	0.0	2.01	3.13
Merged-chr7-19443646-1	chr7	19443546	19443746	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172279, intron 7 of 16)	intron (NM_172279, intron 7 of 16)	14848.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	9.29	4.78	4.56	1.61	4.09	6.9	1.33	5.61	7.08	7.03	8.54	5.95
Merged-chr13-59666611-1	chr13	59666511	59666711	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	9173.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.81	3.27	2.28	2.82	4.09	3.76	4.98	5.19	5.31	1.0	5.53	3.13
Merged-chr9-41182732-1	chr9	41182632	41182832	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23423.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	1.62	5.28	0.57	2.41	4.5	5.33	2.33	4.46	10.23	5.02	1.0	2.51
Merged-chr4-95141529-1	chr4	95141429	95141629	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89307.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	9.29	2.01	0.0	6.44	1.23	1.88	2.66	4.93	4.33	6.53	9.55	3.45
Merged-chr15-102462152-1	chr15	102462052	102462252	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2982.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.81	2.52	2.28	5.63	5.73	6.27	5.98	3.11	2.75	6.03	12.56	7.21
Merged-chr8-11002831-1	chr8	11002731	11002931	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-5019.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	6.46	0.0	2.85	0.0	1.23	2.2	3.65	1.21	0.79	0.5	1.0	1.25
Merged-chr10-79797764-1	chr10	79797664	79797864	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	4192.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	1.21	3.77	0.0	2.41	2.45	0.63	3.32	4.71	4.13	1.51	0.5	3.45
Merged-chr10-52294271-1	chr10	52294171	52294371	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025705, intron 5 of 10)	MLT1E1|LTR|ERVL-MaLR	60652.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	7.27	2.26	3.42	1.21	8.18	4.7	10.3	4.79	4.92	2.51	4.02	1.88
Merged-chr17-48192979-1	chr17	48192879	48193079	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25722.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	4.44	0.25	1.71	0.0	8.18	8.78	9.3	3.76	5.9	8.54	7.54	6.58
Merged-chr2-118746417-1	chr2	118746317	118746517	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001301269, exon 1 of 1)	exon (NM_001301269, exon 1 of 1)	659.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	8.08	5.79	6.28	6.03	3.27	5.33	2.66	4.35	7.47	7.53	4.02	6.58
Merged-chr11-83298361-1	chr11	83298261	83298461	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134025, exon 2 of 4)	exon (NM_134025, exon 2 of 4)	616.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	4.44	1.26	1.14	2.01	3.27	5.02	0.66	4.26	6.29	2.01	6.53	4.07
Merged-chr7-98688837-1	chr7	98688737	98688937	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	14091.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0.81	0.5	3.99	5.63	4.91	5.33	1.33	6.22	7.67	5.52	10.55	3.76
Merged-chr1-162004666-1	chr1	162004566	162004766	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-303.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	0.0	1.01	0.0	1.61	0.82	1.88	0.66	0.84	8.65	2.01	5.02	6.27
Merged-chr18-61101579-1	chr18	61101479	61101679	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-3993.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.81	2.01	2.85	0.0	5.32	10.66	1.0	5.69	2.16	3.01	8.54	10.96
Merged-chr19-56599505-1	chr19	56599405	56599605	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025811)	TTS (NM_025811)	51244.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	1.62	1.26	1.14	0.8	2.86	1.88	6.64	2.69	2.75	0.5	5.02	1.25
Merged-chr18-75370605-1	chr18	75370505	75370705	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	3240.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	9.69	6.04	1.14	6.44	11.45	5.02	7.64	3.2	5.9	16.07	5.02	2.82
Merged-chr11-24077555-1	chr11	24077455	24077655	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159289)	promoter-TSS (NM_001159289)	-501.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	2.02	2.26	0.0	4.02	1.64	2.51	6.31	3.0	3.34	1.0	4.52	3.76
Merged-chr17-84376130-1	chr17	84376030	84376230	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	90078.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.44	2.01	0.0	0.8	0.0	2.51	5.31	4.77	4.33	7.53	5.53	1.57
Merged-chr6-128644181-1	chr6	128644081	128644281	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18204.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	8.08	5.03	7.42	13.67	4.5	4.08	7.64	4.15	2.16	1.0	9.55	2.19
Merged-chr18-46446690-1	chr18	46446590	46446790	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19126.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.62	3.52	5.7	0.8	4.09	2.82	5.65	4.85	8.06	6.53	4.02	0.94
Merged-chrX-60013311-1	chrX	60013211	60013411	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007979, intron 4 of 7)	B3|SINE|B2	13847.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	5.65	4.02	5.13	4.02	0.41	4.7	3.65	4.09	5.31	3.01	3.01	3.45
Merged-chr4-129504057-1	chr4	129503957	129504157	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9524.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	3.63	6.04	6.85	3.22	3.27	4.7	2.66	5.19	2.36	0.0	4.52	0.31
Merged-chr11-103989090-1	chr11	103988990	103989190	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22219.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.65	3.77	1.14	5.63	4.5	4.08	1.99	2.69	8.06	2.01	7.03	7.83
Merged-chr2-165990736-1	chr2	165990636	165990836	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1901.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.62	3.02	4.56	2.82	4.91	5.02	3.99	3.98	7.28	4.52	9.04	2.82
Merged-chr13-47106547-1	chr13	47106447	47106647	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025900)	promoter-TSS (NM_025900)	-326.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	16.15	9.56	6.28	14.08	20.05	5.64	9.63	7.12	14.16	12.55	20.1	9.71
Merged-chr4-41506407-1	chr4	41506307	41506507	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001253788, intron 4 of 5)	intron (NM_001253788, intron 4 of 5)	1357.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	3.63	7.55	4.56	9.25	10.23	1.57	1.0	2.05	7.87	9.04	6.03	3.13
Merged-chr18-53158324-2	chr18	53158212	53158412	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17980.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.04	4.53	1.14	3.22	4.91	6.59	4.32	3.95	7.08	2.51	5.02	7.21
Merged-chr1-151579978-1	chr1	151579878	151580078	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	8605.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.81	0.5	2.85	0.8	5.32	6.9	0.66	3.62	6.49	4.52	2.51	3.45
Merged-chr18-37694418-1	chr18	37694318	37694518	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033588)	promoter-TSS (NM_033588)	-83.0	NM_033588	93713.0	Mm.247203	NM_033588	ENSMUSG00000103567	Pcdhga5	-	protocadherin gamma subfamily A, 5	protein-coding	3.23	3.52	8.56	2.01	0.0	2.51	5.31	4.18	1.77	0.0	1.0	4.07
Merged-chr5-114006311-1	chr5	114006211	114006411	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286396, intron 1 of 10)	intron (NM_001286396, intron 1 of 10)	1503.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.81	2.01	0.0	2.82	5.73	7.53	1.0	5.47	4.33	2.01	3.52	2.19
Merged-chr19-10278011-1	chr19	10277911	10278111	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	26866.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.67	1.26	4.56	4.83	4.91	1.57	1.99	5.16	3.93	2.51	3.01	4.39
Merged-chr5-110781836-1	chr5	110781736	110781936	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1221.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.0	2.52	0.0	4.02	7.36	2.2	1.66	1.71	3.93	2.01	4.52	8.14
Merged-chr19-29376531-1	chr19	29376431	29376631	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021893, intron 3 of 6)	intron (NM_021893, intron 3 of 6)	9093.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.4	7.04	13.69	5.63	0.0	3.45	1.66	1.09	8.06	0.5	5.53	3.76
Merged-chr18-36540779-2	chr18	36540672	36540872	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271546, exon 20 of 22)	exon (NM_001271546, exon 20 of 22)	12620.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	2.83	6.54	7.99	10.05	2.05	4.08	4.65	6.7	1.77	3.51	5.02	5.95
Merged-chr2-143988956-2	chr2	143988846	143989046	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024281, exon 2 of 24)	exon (NM_024281, exon 2 of 24)	22317.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	10.5	7.8	0.57	5.23	2.86	2.51	1.99	4.35	7.28	7.03	7.03	8.46
Merged-chr11-116014710-1	chr11	116014610	116014810	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1991.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	7.67	6.79	4.56	3.22	1.23	7.53	2.66	0.0	3.54	0.5	0.0	0.94
Merged-chr8-103923297-1	chr8	103923197	103923397	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178328.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.81	0.25	0.0	0.0	1.23	2.82	4.65	4.46	2.36	1.0	0.5	1.88
Merged-chr11-54201447-1	chr11	54201347	54201547	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045506, intron 2 of 2)	intron (NR_045506, intron 2 of 2)	11841.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.0	0.5	5.7	1.61	3.27	5.33	1.33	4.82	4.52	9.04	8.04	0.94
Merged-chrX-117769616-1	chrX	117769516	117769716	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-657611.0	NM_001142750	100039551.0	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	2.83	2.52	1.71	2.41	1.23	1.88	5.98	4.43	3.34	6.53	6.03	7.83
Merged-chr9-21225346-1	chr9	21225246	21225446	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13986.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.81	6.04	2.85	2.01	3.27	5.64	1.99	3.7	7.28	3.51	3.52	6.89
Merged-chr7-36696590-1	chr7	36696490	36696690	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1528.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	1.62	2.52	0.57	0.8	1.23	5.64	3.99	2.94	6.88	19.08	3.52	7.21
Merged-chr12-76903897-1	chr12	76903797	76903997	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145927, intron 7 of 11)	MTE2a|LTR|ERVL-MaLR	58351.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	1.62	6.29	11.41	1.61	2.45	1.57	5.65	5.16	5.11	4.02	5.53	3.45
Merged-chr8-70778796-1	chr8	70778696	70778896	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199308, exon 26 of 26)	3' UTR (NM_199308, exon 26 of 26)	1934.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.81	4.02	0.0	0.8	6.55	1.25	0.33	0.98	0.59	2.01	3.01	3.13
Merged-chr14-47515800-1	chr14	47515700	47515900	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027414, intron 4 of 5)	L1MC5|LINE|L1	43239.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	3.23	6.79	5.7	6.44	9.0	1.57	5.98	4.68	8.65	9.04	11.56	7.83
Merged-chr11-70247674-1	chr11	70247574	70247774	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007440, intron 8 of 13)	intron (NM_007440, intron 8 of 13)	7696.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	7.27	8.55	10.84	4.02	2.45	22.58	1.33	4.74	9.24	9.54	2.51	11.59
Merged-chr2-32134208-3	chr2	32134089	32134289	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16959.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	5.25	2.77	7.42	2.82	11.05	7.53	0.66	3.98	7.47	7.03	6.03	6.27
Merged-chr7-48937657-1	chr7	48937557	48937757	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21416.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.25	0.75	0.57	1.61	6.14	1.88	3.99	7.09	2.36	4.52	3.52	1.25
Merged-chr2-122137985-1	chr2	122137885	122138085	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-9702.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	4.44	20.12	10.84	4.42	3.27	4.08	3.65	2.44	5.11	5.52	8.54	2.19
Merged-chr7-121754961-1	chr7	121754861	121755061	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011326, intron 6 of 12)	intron (NM_011326, intron 6 of 12)	20482.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.0	1.51	0.0	0.0	5.32	5.02	0.33	6.31	0.98	0.0	9.04	0.63
Merged-chr6-3428303-1	chr6	3428203	3428403	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28732.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.23	4.02	1.14	8.45	6.14	3.14	1.99	5.55	4.13	1.51	0.5	0.0
Merged-chr2-3285122-1	chr2	3285022	3285222	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008708, intron 1 of 13)	intron (NM_008708, intron 1 of 13)	910.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	7.27	2.52	3.99	6.84	7.77	3.76	5.98	8.24	5.31	2.01	8.04	8.14
Merged-chr4-63686304-2	chr4	63686204	63686404	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51883.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	5.65	7.55	5.7	8.04	6.14	4.39	3.32	6.45	7.08	3.01	17.59	8.77
Merged-chr1-131439238-1	chr1	131439138	131439338	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88123.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.25	8.8	9.7	2.82	6.95	6.59	4.32	4.35	3.34	2.01	4.52	5.64
Merged-chr7-24445686-1	chr7	24445586	24445786	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199013)	promoter-TSS (NM_199013)	-4.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.0	0.75	0.0	0.0	5.73	7.84	5.98	3.98	3.15	0.0	4.02	2.82
Merged-chr1-191718842-1	chr1	191718742	191718942	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001134829, intron 1 of 7)	CpG	447.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	2.02	3.02	2.85	2.41	6.14	1.25	2.66	5.58	3.93	6.53	4.02	7.83
Merged-chr17-45691714-3	chr17	45691598	45691798	+	570.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	5349.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	5.65	7.55	10.27	0.8	2.45	6.9	1.99	3.84	10.62	14.06	8.54	2.82
Merged-chr17-84719304-1	chr17	84719204	84719404	+	570.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028233, intron 30 of 37)	intron (NM_028233, intron 30 of 37)	36183.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	8.48	3.52	7.42	4.42	9.0	7.53	8.97	4.74	4.13	1.0	9.04	3.45
Merged-chr18-56723000-1	chr18	56722900	56723100	+	570.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	15187.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	5.65	5.53	6.28	2.41	6.14	9.72	6.98	4.57	5.51	6.03	6.53	9.08
Merged-chr10-21804514-1	chr10	21804414	21804614	+	570.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77670.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.23	0.5	3.42	3.22	1.64	0.94	3.99	5.33	9.24	9.54	14.07	6.27
Merged-chr15-76312869-1	chr15	76312769	76312969	+	570.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-5624.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	9.69	6.54	7.99	2.41	1.64	4.08	1.0	4.65	4.52	4.02	8.04	3.76
Merged-chr18-61324260-2	chr18	61324144	61324344	+	570.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	73656.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	5.65	6.54	9.7	3.62	0.82	7.53	1.99	2.38	6.69	11.05	7.54	12.84
Merged-chr3-83053966-2	chr3	83053884	83054084	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1554.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	3.63	5.03	0.57	2.41	2.45	4.08	2.33	6.9	7.08	6.03	8.54	4.07
Merged-chr7-120128260-2	chr7	120128158	120128358	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	17033.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	4.04	0.0	6.85	2.82	4.5	3.14	1.99	7.51	4.33	8.54	10.55	7.52
Merged-chr4-48225281-1	chr4	48225181	48225381	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12066.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	1.21	1.51	1.14	5.63	9.0	5.96	6.98	4.43	3.54	6.03	1.51	4.39
Merged-chr10-62726085-1	chr10	62725985	62726185	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033260)	promoter-TSS (NM_001033260)	14.0	NM_001033260	216021.0	Mm.39821	NM_001033260	ENSMUSG00000036923	Stox1	4732470K04Rik|Gm63	storkhead box 1	protein-coding	5.65	3.77	2.85	4.02	0.82	9.72	9.63	4.54	1.38	1.0	2.01	3.13
Merged-chr12-83705998-2	chr12	83705955	83706155	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	17492.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	2.02	1.01	3.99	7.64	1.23	6.27	4.98	1.74	3.93	5.02	3.01	1.88
Merged-chr18-36208846-2	chr18	36208747	36208947	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	5.65	7.04	7.42	7.64	4.5	1.88	2.33	5.38	4.52	1.51	3.01	1.88
Merged-chr5-93117799-1	chr5	93117699	93117899	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	24383.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	7.27	2.01	3.99	7.24	6.14	4.39	3.99	5.97	2.56	2.51	7.03	1.25
Merged-chr8-77433352-2	chr8	77433247	77433447	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-83709.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	9.29	5.53	5.7	6.44	1.64	5.33	3.65	5.55	6.1	4.02	11.56	6.89
Merged-chr18-46564981-1	chr18	46564881	46565081	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	9552.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	3.23	4.02	3.42	1.21	0.82	4.39	5.65	5.05	4.13	1.51	6.53	3.45
Merged-chr17-56897878-1	chr17	56897778	56897978	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022328, intron 6 of 11)	intron (NM_022328, intron 6 of 11)	22245.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	1.62	3.52	10.27	2.82	10.64	5.02	7.97	4.79	7.67	1.0	20.1	3.45
Merged-chr5-122703008-2	chr5	122702921	122703121	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-4523.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.23	6.04	2.28	1.61	10.23	3.45	5.65	5.97	7.87	7.03	4.52	9.08
Merged-chr2-181392766-2	chr2	181392696	181392896	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027656, intron 3 of 3)	intron (NM_027656, intron 3 of 3)	8546.0	NR_045164	329584.0	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462	Slc2a4 regulator, pseudogene	pseudo	6.46	4.02	0.57	2.01	8.59	7.21	1.99	3.28	10.42	8.03	10.55	12.22
Merged-chr16-84627291-1	chr16	84627191	84627391	+	570.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52498.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	3.23	6.29	6.85	2.41	2.05	5.64	0.33	0.0	7.67	10.04	12.06	4.07
Merged-chr13-33003684-2	chr13	33003561	33003761	+	570.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	-880.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	5.65	4.53	6.28	2.41	4.5	5.33	2.33	4.01	8.65	12.05	12.06	8.77
Merged-chrX-164092962-1	chrX	164092862	164093062	+	570.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313719, intron 1 of 3)	intron (NM_001313719, intron 1 of 3)	773.0	NM_001313719	57394.0	Mm.143766	NM_020626	ENSMUSG00000015401	Tmem27	0610008J07Rik|NX-17|NX17	transmembrane protein 27	protein-coding	6.06	7.8	7.99	2.82	6.14	4.7	3.32	3.39	8.46	8.03	11.56	5.01
Merged-chr4-133198916-3	chr4	133198869	133199069	+	570.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153423)	TTS (NM_153423)	3314.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	6.46	2.01	1.71	2.82	4.5	0.31	5.65	2.69	5.11	8.03	8.54	6.89
Merged-chr13-64448192-1	chr13	64448092	64448292	+	570.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15639.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.83	5.79	5.7	6.84	7.36	6.59	9.97	5.83	1.18	5.02	1.0	3.13
Merged-chr6-122834548-2	chr6	122834418	122834618	+	570.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021899, intron 6 of 10)	ID4|SINE|ID	3141.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	5.25	3.27	6.85	4.02	5.73	1.88	4.32	5.47	8.85	7.03	7.03	2.19
Merged-chr12-86263002-1	chr12	86262902	86263102	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027405, intron 5 of 9)	intron (NM_027405, intron 5 of 9)	21144.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	3.23	7.8	9.7	2.01	3.27	3.45	2.66	2.89	5.11	6.03	2.51	10.34
Merged-chr13-4666970-2	chr13	4666890	4667090	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57826.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.65	4.78	1.14	6.03	8.18	9.09	2.66	5.86	13.37	8.54	12.06	5.95
Merged-chr12-34586575-1	chr12	34586475	34586675	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-57686.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.23	2.52	3.42	9.65	3.27	6.27	3.65	4.85	3.15	5.52	2.51	1.88
Merged-chr17-17447986-1	chr17	17447886	17448086	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025681, intron 4 of 5)	MIR|SINE|MIR	45300.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	4.85	9.31	6.85	2.82	9.82	6.59	2.99	5.97	5.31	5.02	8.54	4.39
Merged-chr10-80670204-1	chr10	80670104	80670304	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021462, intron 5 of 13)	intron (NM_021462, intron 5 of 13)	6089.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	6.86	7.04	3.99	1.21	1.23	1.88	0.0	0.79	2.56	3.01	1.51	1.25
Merged-chr2-91083876-1	chr2	91083776	91083976	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12802.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	9.69	6.04	11.41	10.46	3.27	4.7	5.65	3.62	6.29	7.53	3.52	3.45
Merged-chr8-70905953-1	chr8	70905853	70906053	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173013)	promoter-TSS (NM_173013)	-21.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	4.85	4.02	7.42	2.82	2.45	8.78	3.99	4.07	12.59	4.52	2.51	6.89
Merged-chr3-96238331-3	chr3	96238248	96238448	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178216)	TTS (NM_178216)	779.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	6.86	6.29	4.56	6.44	2.45	2.2	2.99	3.76	4.13	8.54	1.0	6.89
Merged-chr12-3308484-2	chr12	3308417	3308617	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	1452.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	6.46	2.52	5.13	9.25	2.86	4.39	5.31	3.9	8.65	6.53	9.55	6.27
Merged-chr2-10351349-1	chr2	10351249	10351449	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19102.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	3.63	5.03	12.55	3.22	4.09	5.02	5.65	5.58	0.79	5.02	4.02	0.94
Merged-chr11-115248229-1	chr11	115248129	115248329	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010350)	TTS (NM_010350)	19014.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.81	1.26	2.28	3.22	9.41	6.27	3.32	3.76	5.11	5.52	1.51	1.88
Merged-chr8-34762931-1	chr8	34762831	34763031	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44679.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.42	3.77	1.71	0.0	1.23	4.7	2.66	2.75	5.51	2.01	13.06	7.21
Merged-chr2-33432373-2	chr2	33432267	33432467	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1043.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	5.25	3.27	11.98	12.07	4.5	2.82	1.0	6.2	5.31	6.03	16.58	6.89
Merged-chr2-6081361-1	chr2	6081261	6081461	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63D|DNA|hAT-Blackjack	48824.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	2.42	2.01	1.71	2.41	10.64	1.25	5.98	3.25	2.36	2.01	1.0	5.64
Merged-chr3-59079482-1	chr3	59079382	59079582	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 10 of 43)	intron (NM_177855, intron 10 of 43)	22339.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	1.62	3.27	3.42	2.41	2.45	7.53	2.66	5.5	5.31	2.51	5.02	4.7
Merged-chr19-10895981-1	chr19	10895881	10896081	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134129, intron 1 of 15)	intron (NM_134129, intron 1 of 15)	750.0	NM_001253843	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	6.06	2.01	1.14	0.8	2.45	3.76	4.32	3.14	6.49	4.02	6.03	3.13
Merged-chr10-117675808-1	chr10	117675708	117675908	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027468, intron 6 of 8)	intron (NM_027468, intron 6 of 8)	34950.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.63	0.75	2.28	0.8	4.09	4.08	2.33	6.31	7.08	12.05	6.03	4.7
Merged-chr17-56023203-1	chr17	56023103	56023303	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13434.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	8.08	2.01	0.0	0.4	6.55	1.25	1.99	3.93	5.9	6.03	6.03	3.13
Merged-chr14-33851613-1	chr14	33851513	33851713	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40330.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	1.62	0.0	3.42	5.63	1.64	5.02	4.32	4.88	1.18	5.52	3.01	1.88
Merged-chr14-109641844-1	chr14	109641744	109641944	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-727605.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.81	1.51	6.85	1.61	0.82	2.51	4.65	5.36	2.75	2.01	2.01	1.88
Merged-chr2-181364905-1	chr2	181364805	181365005	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-26.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	5.65	7.8	5.7	10.46	1.23	5.64	8.3	3.42	10.42	4.52	10.55	9.4
Merged-chr10-88679312-1	chr10	88679212	88679412	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 3 of 5)	B4A|SINE|B4	3711.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	2.83	5.53	1.14	3.22	2.05	1.88	3.99	2.19	3.93	2.51	5.53	1.88
Merged-chr1-97571259-1	chr1	97571159	97571359	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90417.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.81	2.26	2.28	0.8	4.5	4.39	3.99	6.34	0.39	0.0	3.52	1.57
Merged-chr2-35661821-1	chr2	35661721	35661921	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290637, intron 3 of 16)	CpG-8041	-30173.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.23	7.8	6.85	2.01	3.27	6.9	5.31	2.97	6.29	2.51	7.03	5.33
Merged-chr6-54948356-1	chr6	54948256	54948456	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	23305.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.44	2.77	3.42	6.44	4.09	10.03	3.65	5.72	3.54	6.53	8.04	12.53
Merged-chr2-122743649-1	chr2	122743549	122743749	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	5144.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	4.44	8.3	7.99	6.44	3.27	5.02	5.65	4.77	1.77	1.51	3.01	1.25
Merged-chr16-87738192-1	chr16	87738092	87738292	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39238.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.42	0.25	0.0	1.21	5.32	1.25	5.31	5.94	0.98	1.0	3.52	1.25
Merged-chr8-71297930-1	chr8	71297830	71298030	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	MTD|LTR|ERVL-MaLR	25216.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	1.01	1.71	0.8	2.45	1.57	4.65	4.77	1.18	4.52	0.0	1.25
Merged-chr1-136661125-1	chr1	136661025	136661225	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22271.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	1.62	6.29	2.28	10.86	1.64	1.57	1.99	5.41	6.49	4.02	7.03	6.58
Merged-chr13-119614722-1	chr13	119614622	119614822	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9097.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	1.21	0.75	0.57	0.8	3.27	6.9	5.98	2.69	1.18	2.51	6.03	3.13
Merged-chr11-75131507-1	chr11	75131407	75131607	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	36645.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.83	1.51	3.99	0.0	0.82	2.2	3.99	5.05	4.33	2.01	4.02	1.57
Merged-chr17-5560308-1	chr17	5560208	5560408	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67708.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.08	1.51	2.28	0.8	4.91	4.39	2.99	3.79	1.77	6.03	5.53	0.63
Merged-chr9-88692438-1	chr9	88692338	88692538	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	27149.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	1.21	2.26	6.28	3.22	4.5	6.59	5.31	4.43	3.93	1.51	4.02	4.39
Merged-chr1-52129965-1	chr1	52129865	52130065	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205313, intron 5 of 24)	intron (NM_001205313, intron 5 of 24)	10343.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.83	2.52	5.13	0.8	0.0	0.63	1.0	0.17	7.28	2.51	4.02	4.7
Merged-chr8-25192077-1	chr8	25191977	25192177	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	9465.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.83	0.25	1.14	1.21	5.73	4.7	5.31	8.52	5.51	4.02	7.54	2.82
Merged-chr6-38940363-1	chr6	38940263	38940463	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21377.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.25	5.03	15.4	7.64	1.23	3.76	4.32	15.06	8.46	5.02	5.02	5.01
Merged-chr1-120083376-1	chr1	120083276	120083476	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9596.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.42	3.27	6.28	2.41	6.14	8.15	1.33	3.2	7.87	6.03	7.03	3.45
Merged-chr16-91475130-1	chr16	91475030	91475230	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10026.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.46	8.05	4.56	0.8	8.59	14.11	1.33	0.9	0.39	1.51	2.51	4.07
Merged-chr9-44708609-1	chr9	44708509	44708709	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153537, intron 9 of 21)	CpG	26589.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	1.62	2.26	6.85	4.42	2.86	3.76	2.66	3.62	3.15	4.52	7.03	0.63
Merged-chr9-71831919-1	chr9	71831819	71832019	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60317.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	7.67	3.52	3.99	3.22	5.32	3.14	1.66	3.73	4.72	5.02	5.02	4.39
Merged-chr16-30308921-1	chr16	30308821	30309021	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1860.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	4.44	6.04	0.57	2.01	8.18	8.47	1.0	2.58	7.47	11.55	9.04	3.13
Merged-chr12-82469839-1	chr12	82469739	82469939	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147086.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	3.23	3.27	8.56	0.8	2.86	4.7	1.0	5.05	9.64	5.02	5.02	1.57
Merged-chr2-49372189-1	chr2	49372089	49372289	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79297.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	1.21	1.26	4.56	8.04	5.32	4.39	4.32	4.63	5.11	2.01	4.52	4.07
Merged-chr13-58696108-1	chr13	58696008	58696208	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	66203.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	11.31	4.53	14.83	4.83	2.05	2.2	0.66	2.86	4.92	6.03	2.51	8.46
Merged-chr19-53774114-1	chr19	53774014	53774214	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	96808.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	1.21	3.52	6.28	0.8	6.14	0.31	1.99	1.51	3.15	3.01	16.08	6.27
Merged-chr7-80741204-1	chr7	80741104	80741304	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016721, intron 18 of 37)	intron (NM_016721, intron 18 of 37)	-52327.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	2.02	1.76	8.56	9.65	3.27	3.45	1.0	2.36	3.54	3.01	8.04	5.01
Merged-chr2-31767974-1	chr2	31767874	31768074	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	7801.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	2.42	1.01	4.56	0.8	5.73	4.08	1.99	5.21	0.79	0.0	4.02	1.57
Merged-chr4-141368274-2	chr4	141368186	141368386	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085513)	promoter-TSS (NM_001085513)	94.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	2.83	3.77	2.28	4.42	2.45	2.51	3.99	2.64	8.46	2.01	1.0	5.95
Merged-chrX-14838907-1	chrX	14838807	14839007	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	272582.0	NR_033171	67395.0	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.0	2.01	4.56	1.61	2.86	2.2	4.65	4.49	1.97	0.5	5.02	2.82
Merged-chr16-17741085-1	chr16	17740985	17741185	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18138.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	1.62	2.01	3.42	0.0	1.23	3.14	5.31	4.85	5.31	3.01	8.04	2.51
Merged-chr17-33439330-1	chr17	33439230	33439430	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6431.0	NM_183282	69481.0	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	7.27	2.52	10.27	6.03	5.32	10.66	1.66	6.62	8.26	3.01	6.03	1.57
Merged-chr4-141302196-1	chr4	141302096	141302296	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010139, intron 1 of 16)	intron (NM_010139, intron 1 of 16)	975.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	4.04	3.52	3.42	2.41	2.05	3.45	4.65	6.22	9.44	5.02	3.52	2.82
Merged-chr10-77251953-1	chr10	77251853	77252053	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7270.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	1.62	2.77	3.42	2.41	0.82	3.45	0.33	3.79	9.44	3.51	4.02	5.64
Merged-chr2-146854514-1	chr2	146854414	146854614	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1375.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	1.62	3.52	2.28	2.41	5.73	3.76	1.33	6.48	0.39	1.51	0.0	2.19
Merged-chr10-68132381-1	chr10	68132281	68132481	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	146345.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.0	0.0	1.14	0.0	5.32	5.02	4.32	4.23	5.51	5.02	1.0	1.57
Merged-chr5-122899739-1	chr5	122899639	122899839	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	CpG	611.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	8.08	4.28	5.7	7.24	9.0	3.45	6.64	4.91	7.87	8.54	7.54	5.95
Merged-chr6-125640743-1	chr6	125640643	125640843	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 27 of 51)	intron (NM_011708, intron 27 of 51)	-49676.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.81	0.5	3.99	0.8	2.45	2.2	5.31	4.91	2.36	4.02	3.01	0.94
Merged-chr2-152368976-1	chr2	152368876	152369076	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001009948, exon 3 of 3)	3' UTR (NM_001009948, exon 3 of 3)	7590.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	5.25	5.03	7.42	2.82	2.05	5.64	1.0	4.18	6.29	5.02	15.58	0.63
Merged-chr11-94587560-1	chr11	94587460	94587660	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153807, intron 1 of 15)	ID_B1|SINE|B4	14226.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	1.62	1.51	6.85	0.0	6.55	2.82	9.97	5.07	4.52	2.01	10.05	3.76
Merged-chr9-110676257-1	chr9	110676157	110676357	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	ID_B1|SINE|B4	19754.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.04	4.28	2.85	4.02	3.27	6.27	3.65	1.46	9.83	6.53	16.08	7.52
Merged-chr2-180347357-1	chr2	180347257	180347457	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12678.0	NM_008093	14464.0	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	3.63	3.52	3.42	2.01	6.55	2.2	0.0	3.48	2.56	3.51	9.55	5.64
Merged-chr6-28832077-1	chr6	28831977	28832177	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138682)	promoter-TSS (NM_138682)	-330.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	1.21	5.79	10.84	0.0	1.64	2.51	4.98	4.46	4.33	3.51	1.51	5.01
Merged-chr12-104069859-1	chr12	104069759	104069959	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8100.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	2.42	4.28	4.56	2.82	2.86	3.14	3.32	2.3	7.67	3.51	10.55	5.95
Merged-chr17-43589998-1	chr17	43589898	43590098	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045444, exon 1 of 3)	non-coding (NR_045444, exon 1 of 3)	1511.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	2.42	1.51	1.14	2.41	6.95	5.64	3.99	4.43	2.16	1.51	10.05	1.57
Merged-chr19-3930765-1	chr19	3930665	3930865	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1049.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	5.25	2.01	6.28	5.63	2.45	5.96	1.0	3.22	2.75	6.03	3.52	6.58
Merged-chr2-104491570-1	chr2	104491470	104491670	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010434, intron 1 of 15)	intron (NM_010434, intron 1 of 15)	2919.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.81	2.52	5.7	0.8	6.14	3.45	0.0	5.13	4.92	6.53	7.54	3.76
Merged-chr1-40480217-1	chr1	40480117	40480317	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	14211.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	1.62	0.0	0.0	3.22	3.27	8.15	2.33	5.41	0.98	0.0	1.0	0.0
Merged-chr11-102930768-1	chr11	102930668	102930868	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-5644.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	3.63	3.77	1.14	0.8	2.45	4.39	3.32	5.07	1.57	0.0	1.0	0.63
Merged-chr6-32997028-1	chr6	32996928	32997128	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63232.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.0	2.52	0.0	0.0	0.41	0.31	4.65	4.68	0.79	2.51	3.01	1.88
Merged-chr17-84082270-1	chr17	84082170	84082370	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	3610.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	3.63	3.27	3.99	3.62	0.82	3.14	2.66	0.64	8.06	6.03	5.02	6.89
Merged-chr15-30727321-1	chr15	30727221	30727421	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	RMER6A|LTR|ERVK	-311805.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	3.02	6.85	4.02	1.64	6.59	2.99	4.51	5.31	1.51	6.03	1.88
Merged-chr14-30867279-1	chr14	30867179	30867379	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-11978.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	4.85	2.77	2.28	5.23	7.36	6.59	1.99	3.5	3.74	3.51	7.03	4.39
Merged-chr5-35106201-1	chr5	35106101	35106301	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-504.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	2.83	5.79	7.42	2.41	1.64	8.15	8.64	7.6	7.28	4.52	4.02	2.82
Merged-chr9-20662470-1	chr9	20662370	20662570	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023371, intron 3 of 3)	intron (NM_023371, intron 3 of 3)	10340.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	6.86	4.78	2.28	3.62	3.27	2.82	1.66	3.25	6.88	2.01	9.55	1.88
Merged-chr16-94559616-1	chr16	94559516	94559716	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10590.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.81	0.0	0.0	2.82	4.91	2.51	0.33	2.02	4.13	4.02	4.52	4.7
Merged-chr6-89340256-1	chr6	89340156	89340356	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	22357.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.65	5.79	7.42	3.62	2.45	6.27	3.65	5.21	6.1	9.54	8.04	5.33
Merged-chr3-86986693-1	chr3	86986593	86986793	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007640, exon 1 of 7)	exon (NM_007640, exon 1 of 7)	107.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	2.02	6.29	1.14	0.0	3.27	7.84	7.64	6.22	3.74	1.0	3.52	0.0
Merged-chr8-120335545-1	chr8	120335445	120335645	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107315.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	1.21	1.76	3.99	4.42	1.64	1.88	4.32	2.83	4.33	2.01	2.01	2.19
Merged-chr5-118514205-1	chr5	118514105	118514305	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46514.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.02	4.28	1.14	1.21	2.45	5.33	2.99	3.79	2.95	2.01	5.02	2.19
Merged-chr14-50905451-1	chr14	50905351	50905551	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12196.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	10.5	1.01	4.56	3.62	3.27	2.51	1.33	4.77	7.87	5.02	12.56	7.21
Merged-chr4-117886340-1	chr4	117886240	117886440	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_033617, exon 3 of 8)	exon (NM_033617, exon 3 of 8)	989.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	6.86	5.28	0.0	1.61	5.73	3.76	10.96	5.38	6.69	11.55	6.03	8.77
Merged-chr17-26099548-1	chr17	26099448	26099648	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4078.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	6.86	6.54	2.28	6.03	4.09	1.88	3.99	1.68	1.38	0.5	0.5	2.19
Merged-chrX-151942709-1	chrX	151942609	151942809	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29495.0	NR_029753	723947.0		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	5.65	5.03	7.42	2.01	3.27	7.84	8.3	4.71	4.33	7.53	7.03	3.76
Merged-chr9-121708921-1	chr9	121708821	121709021	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1468.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	6.06	2.01	0.0	1.61	2.45	2.82	0.0	2.86	9.64	10.54	6.03	4.39
Merged-chr10-13982401-1	chr10	13982301	13982501	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16022.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.44	5.03	4.56	1.61	2.45	2.82	3.99	4.93	4.92	3.01	4.02	7.21
Merged-chr2-104035092-1	chr2	104034992	104035192	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355505, intron 3 of 10)	intron (NM_001355505, intron 3 of 10)	-6731.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	3.23	2.52	3.99	4.02	6.14	2.82	4.98	4.51	4.13	4.52	0.5	2.19
Merged-chr2-129174601-1	chr2	129174501	129174701	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6072.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0.4	3.02	4.56	4.02	5.32	4.08	1.33	4.35	6.1	2.51	3.01	4.39
Merged-chr4-15959139-1	chr4	15959039	15959239	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 1 of 15)	PB1D7|SINE|Alu	1172.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	4.04	3.02	2.28	3.22	4.09	3.45	2.66	2.58	4.13	2.51	9.55	5.95
Merged-chr8-94180939-1	chr8	94180839	94181039	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_013602)	TTS (NM_013602)	1850.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	9.69	8.55	2.28	1.61	5.32	1.88	7.97	0.62	5.9	3.51	6.03	4.7
Merged-chr9-47546328-1	chr9	47546228	47546428	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	15976.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.83	2.77	7.99	3.62	5.73	1.25	1.33	6.34	0.98	1.51	1.0	1.57
Merged-chr6-3509930-1	chr6	3509830	3510030	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167751, intron 2 of 26)	intron (NM_001167751, intron 2 of 26)	11537.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	1.21	4.02	0.0	0.8	3.68	3.14	1.66	3.76	5.51	3.51	4.02	4.39
Merged-chr5-36668748-1	chr5	36668648	36668848	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081232, intron 2 of 8)	RLTR26_Mus|LTR|ERVK	27273.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	2.83	2.52	10.27	7.24	3.27	4.39	2.66	9.31	9.24	1.0	9.04	1.57
Merged-chr2-27734515-1	chr2	27734415	27734615	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23932.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.42	2.52	6.85	2.82	7.36	7.21	0.33	3.9	4.13	3.51	1.51	3.76
Merged-chr6-97444405-1	chr6	97444305	97444505	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14881.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.02	2.77	3.99	2.41	9.41	4.39	5.65	4.35	3.74	1.0	3.01	2.19
Merged-chr8-123213791-1	chr8	123213691	123213891	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177279, intron 2 of 2)	intron (NM_177279, intron 2 of 2)	933.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	10.09	3.77	4.56	5.63	6.14	1.88	6.31	4.23	0.79	4.02	0.0	0.94
Merged-chr1-53783146-1	chr1	53783046	53783246	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	PB1D9|SINE|Alu	2069.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	1.51	7.42	3.22	0.41	5.33	1.33	5.41	0.98	4.02	6.53	1.88
Merged-chr16-90694924-1	chr16	90694824	90695024	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32447.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	1.62	3.77	3.99	6.84	10.23	3.76	5.65	4.96	11.8	3.01	8.04	1.57
Merged-chr10-95297238-1	chr10	95297138	95297338	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	26471.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.04	5.03	13.69	5.23	2.86	3.45	3.65	7.32	6.49	1.0	3.52	8.77
Merged-chr17-47676724-1	chr17	47676624	47676824	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198421, intron 4 of 6)	intron (NM_198421, intron 4 of 6)	-10886.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	8.88	6.04	9.13	4.83	5.32	4.7	1.99	6.59	7.08	0.5	7.03	6.58
Merged-chr16-95701068-1	chr16	95700968	95701168	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1339.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	1.62	1.76	0.0	3.22	5.73	0.31	5.98	2.69	3.34	9.04	4.52	10.65
Merged-chrX-167276734-2	chrX	167276653	167276853	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12424.0	NM_001313760	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	3.23	4.02	5.7	3.62	9.41	9.41	6.31	4.35	7.87	13.56	7.03	3.45
Merged-chr13-95777403-1	chr13	95777303	95777503	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	80483.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	3.23	2.52	0.57	2.82	5.73	2.2	1.33	4.65	6.29	7.53	13.06	0.63
Merged-chr3-39182969-1	chr3	39182869	39183069	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	296029.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.42	1.01	3.42	0.8	0.82	0.0	0.33	2.13	12.39	6.53	13.57	4.07
Merged-chr14-57856308-1	chr14	57856208	57856408	+	569.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360097, intron 7 of 13)	intron (NM_001360097, intron 7 of 13)	30069.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	4.85	8.05	6.85	2.41	8.18	8.47	5.65	5.58	8.65	2.01	8.54	4.07
Merged-chr19-28975395-2	chr19	28975297	28975497	+	569.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-11243.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	2.83	6.04	5.7	11.26	6.95	6.9	7.97	4.63	3.15	2.51	4.52	5.64
Merged-chr1-155096094-1	chr1	155095994	155096194	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010500)	TTS (NM_010500)	3542.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.63	6.79	4.56	3.22	6.95	7.53	3.65	4.77	8.46	7.03	15.07	3.45
Merged-chr9-48432643-1	chr9	48432543	48432743	+	569.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21701.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	3.23	5.28	4.56	1.61	3.27	3.76	1.99	3.73	9.64	9.04	11.05	3.45
Merged-chr12-116625954-1	chr12	116625854	116626054	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	140234.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	5.25	3.52	6.85	2.41	2.05	4.39	4.98	4.09	2.56	4.02	1.51	3.45
Merged-chr19-55850921-1	chr19	55850821	55851021	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-44400.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.25	7.8	6.28	3.62	5.32	5.33	4.98	4.54	6.88	1.0	5.53	5.33
Merged-chr6-122304553-1	chr6	122304453	122304653	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4167.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	8.48	3.77	3.42	4.83	7.36	5.64	5.98	4.79	6.88	14.56	2.01	5.33
Merged-chr11-117769152-1	chr11	117769052	117769252	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_154387, exon 15 of 19)	non-coding (NR_154387, exon 15 of 19)	10496.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.44	2.77	8.56	2.01	5.32	4.39	2.99	5.47	5.51	4.52	4.52	9.4
Merged-chr1-152537393-1	chr1	152537293	152537493	+	569.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	87824.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	1.21	4.28	4.56	8.45	6.14	3.76	2.99	4.18	4.13	3.01	4.02	6.27
Merged-chr14-19818100-1	chr14	19818000	19818200	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026528, intron 3 of 7)	intron (NM_026528, intron 3 of 7)	5723.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	2.83	2.26	9.13	5.63	6.14	9.09	5.31	4.32	5.51	6.53	10.05	6.58
Merged-chr3-52300337-1	chr3	52300237	52300437	+	569.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	32000.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	9.69	5.53	12.55	7.64	2.86	4.7	1.99	4.49	3.54	3.01	6.03	9.08
Merged-chr17-34169482-1	chr17	34169382	34169582	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16291.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	7.27	10.56	1.71	8.04	4.09	5.02	5.65	6.95	9.44	3.51	5.02	13.16
Merged-chr6-116074045-1	chr6	116073945	116074145	+	569.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-79040.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.23	4.78	3.99	4.83	5.73	8.78	6.64	4.01	5.31	6.03	2.51	2.82
Merged-chr1-92082201-1	chr1	92082101	92082301	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	98140.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.27	8.55	5.7	8.85	3.27	0.31	3.65	0.59	2.95	1.0	2.51	1.57
Merged-chr7-83396376-1	chr7	83396276	83396476	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-188555.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	1.21	2.01	9.13	10.05	5.73	5.96	8.97	3.87	6.69	6.53	15.07	6.27
Merged-chr2-165969672-1	chr2	165969572	165969772	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22965.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.63	4.02	9.13	2.41	4.09	6.59	1.99	2.07	7.47	7.53	10.55	3.76
Merged-chr9-114789836-1	chr9	114789736	114789936	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027294, intron 3 of 3)	intron (NM_027294, intron 3 of 3)	-7843.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.04	1.76	4.56	0.8	4.5	5.02	4.32	9.2	4.92	5.02	7.54	1.88
Merged-chr7-139119556-1	chr7	139119456	139119656	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021302, intron 8 of 11)	intron (NM_021302, intron 8 of 11)	33555.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	5.25	5.79	1.14	6.44	4.91	0.0	2.99	1.91	3.74	0.0	2.51	3.13
Merged-chr2-93913774-1	chr2	93913674	93913874	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43326.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.5	1.14	0.8	4.09	1.88	10.3	4.07	0.79	2.51	8.04	4.7
Merged-chr14-19840058-1	chr14	19839958	19840158	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_105025, intron 1 of 2)	intron (NR_105025, intron 1 of 2)	1133.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	6.86	11.07	10.84	7.24	3.68	2.82	6.98	4.15	6.69	8.03	4.02	3.13
Merged-chr17-81581349-1	chr17	81581249	81581449	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	L2|LINE|L2	157038.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	8.08	3.77	7.42	5.23	6.14	3.14	2.66	3.28	8.06	1.51	3.52	5.33
Merged-chr8-34901877-1	chr8	34901777	34901977	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	63813.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.63	0.75	5.7	1.61	2.86	7.21	5.31	4.51	4.52	3.01	4.52	5.33
Merged-chr3-105055841-1	chr3	105055741	105055941	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2695.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	3.63	1.01	5.13	0.0	6.14	0.63	1.33	8.92	3.34	2.51	3.01	0.31
Merged-chr8-94954956-1	chr8	94954856	94955056	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22153.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	10.5	3.27	8.56	4.02	8.18	9.41	5.31	3.0	6.49	7.53	15.58	5.64
Merged-chr6-72149799-1	chr6	72149699	72149899	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-26602.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.83	0.0	1.14	1.61	6.55	1.88	7.97	0.59	2.75	3.51	5.53	5.64
Merged-chrX-105121386-1	chrX	105121286	105121486	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_053201, exon 1 of 1)	exon (NM_053201, exon 1 of 1)	1008.0	NM_053201	107528.0	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	6.46	3.52	4.56	5.63	2.05	4.7	3.65	5.72	3.54	2.51	14.57	6.27
Merged-chr12-73534722-1	chr12	73534622	73534822	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11673.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	3.63	3.27	2.28	1.61	8.18	3.14	4.32	4.21	4.33	4.52	4.02	2.19
Merged-chr13-119434542-1	chr13	119434442	119434642	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 2 of 10)	intron (NM_145457, intron 2 of 10)	5640.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	1.62	7.04	0.0	3.22	4.91	4.39	3.32	8.36	7.28	3.51	8.04	7.21
Merged-chr12-36153427-1	chr12	36153327	36153527	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	3398.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	5.65	1.76	5.7	2.41	2.05	0.63	5.31	3.45	5.9	4.52	3.01	2.19
Merged-chr1-121314961-1	chr1	121314861	121315061	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271532, intron 1 of 4)	intron (NM_001271532, intron 1 of 4)	12717.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.63	1.26	5.13	3.22	7.36	4.39	1.99	3.95	1.38	0.0	1.51	2.51
Merged-chr11-89017900-1	chr11	89017800	89018000	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	18497.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.4	3.02	3.99	1.21	6.95	5.96	2.66	3.0	4.52	12.05	1.51	1.88
Merged-chr14-16366502-1	chr14	16366402	16366602	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	1296.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.25	5.79	3.42	8.04	4.5	4.39	9.97	4.35	9.05	3.01	4.52	4.7
Merged-chr18-55288716-1	chr18	55288616	55288816	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-296125.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.27	6.29	2.28	4.42	4.91	4.39	6.98	4.63	6.49	2.01	3.52	1.25
Merged-chr10-89547988-1	chr10	89547888	89548088	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14366.0	NM_001163504	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	1.21	2.52	5.13	0.8	4.09	6.9	4.98	0.9	0.0	0.0	0.0	0.0
Merged-chr11-55036758-1	chr11	55036658	55036858	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	-3287.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	8.48	5.03	5.7	8.85	0.0	0.63	1.66	0.62	0.79	1.0	0.5	0.0
Merged-chr15-9138261-1	chr15	9138161	9138361	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	2193.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.63	2.52	2.85	0.0	5.73	1.57	1.66	3.7	5.9	1.0	0.0	4.39
Merged-chr1-140465763-1	chr1	140465663	140465863	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 13 of 27)	MLT1F|LTR|ERVL-MaLR	190639.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	2.42	2.52	6.85	2.82	1.64	5.33	2.33	4.63	2.75	0.0	1.51	1.88
Merged-chr15-27676953-1	chr15	27676853	27677053	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	B4A|SINE|B4	4589.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.04	1.76	0.57	2.41	1.23	2.51	3.99	4.68	4.33	1.0	2.51	2.82
Merged-chr19-6345370-2	chr19	6345275	6345475	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_117093, intron 14 of 30)	intron (NR_117093, intron 14 of 30)	-1105.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	4.85	6.04	2.28	3.62	6.14	2.2	2.33	4.23	4.33	4.52	12.56	7.52
Merged-chr2-27684192-1	chr2	27684092	27684292	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	6991.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	1.62	5.53	1.14	0.4	4.09	6.27	2.66	2.41	8.85	4.52	8.04	2.51
Merged-chr13-55488108-2	chr13	55488019	55488219	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019813)	promoter-TSS (NM_019813)	-43.0	NM_001177372	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	2.42	6.54	9.7	6.03	3.27	1.88	4.65	4.57	2.75	2.01	9.04	5.01
Merged-chr7-90032339-1	chr7	90032239	90032439	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3180.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.25	1.51	3.42	2.01	4.91	5.02	2.99	5.97	3.93	5.52	7.03	2.82
Merged-chr19-55365650-1	chr19	55365550	55365750	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	49593.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	3.23	2.01	7.42	3.22	7.36	4.7	2.66	4.57	4.33	4.02	4.02	4.07
Merged-chr9-96197012-1	chr9	96196912	96197112	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178667, intron 1 of 13)	intron (NM_178667, intron 1 of 13)	737.0	NM_001184708	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	7.27	6.29	2.85	1.21	3.27	5.33	5.98	4.23	4.72	5.52	6.53	7.52
Merged-chr5-124424533-1	chr5	124424433	124424633	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081203, intron 1 of 31)	intron (NM_001081203, intron 1 of 31)	1069.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	5.25	3.02	6.85	3.22	5.32	6.59	3.99	4.85	7.87	4.02	4.02	2.51
Merged-chr5-139370446-1	chr5	139370346	139370546	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029768)	promoter-TSS (NR_029768)	-701.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	1.21	1.26	2.28	2.01	7.36	1.25	3.65	5.33	3.15	2.51	7.54	2.51
Merged-chr13-113587737-1	chr13	113587637	113587837	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30827.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.04	3.52	10.27	4.42	3.27	5.33	1.0	3.53	0.79	0.5	0.5	2.19
Merged-chr1-40022933-1	chr1	40022833	40023033	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252202, intron 27 of 29)	intron (NM_001252202, intron 27 of 29)	-61781.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	1.62	7.55	3.42	9.25	1.23	2.51	0.66	4.12	6.1	2.51	9.04	3.13
Merged-chr6-29649917-1	chr6	29649817	29650017	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40068.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	4.85	2.52	11.41	3.62	2.45	4.08	1.0	2.69	4.13	1.0	3.52	2.82
Merged-chr4-120129572-1	chr4	120129472	120129672	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010657, intron 7 of 8)	L2|LINE|L2	-31634.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.86	8.05	2.85	6.44	2.45	3.45	13.62	3.81	4.52	0.5	3.01	4.7
Merged-chr10-67760690-1	chr10	67760590	67760790	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151972.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	1.62	7.04	0.0	4.02	5.32	3.76	11.96	5.19	2.16	6.03	9.55	5.33
Merged-chr10-51484268-1	chr10	51484168	51484368	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008147, intron 6 of 8)	intron (NM_008147, intron 6 of 8)	3656.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	2.42	4.02	2.85	4.83	1.23	8.78	6.31	1.35	3.34	2.51	0.0	1.57
Merged-chr15-13561459-1	chr15	13561359	13561559	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-387784.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	1.76	0.57	3.22	3.27	4.39	0.66	4.21	0.98	6.03	7.54	2.51
Merged-chr15-77359691-1	chr15	77359591	77359791	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39419.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	4.04	1.01	3.99	2.82	1.23	6.9	2.66	4.37	0.2	4.02	1.0	2.19
Merged-chr4-58470452-1	chr4	58470352	58470552	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	28951.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.4	4.02	1.14	0.4	3.27	3.14	1.66	1.71	8.06	5.52	7.54	2.51
Merged-chr19-16599480-1	chr19	16599380	16599580	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008137, intron 3 of 6)	intron (NM_008137, intron 3 of 6)	163813.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	7.67	2.77	3.42	3.22	7.77	7.21	1.66	1.91	7.87	6.53	4.02	2.82
Merged-chr14-76473609-1	chr14	76473509	76473709	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-14827.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.25	3.77	2.28	2.82	5.32	7.84	0.0	4.54	7.67	10.54	3.52	3.45
Merged-chr19-21572954-1	chr19	21572854	21573054	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	79837.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	8.48	7.04	11.98	6.44	0.82	0.63	3.32	2.55	3.93	3.51	1.0	1.88
Merged-chrX-13656917-1	chrX	13656817	13657017	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284503, intron 5 of 26)	intron (NM_001284503, intron 5 of 26)	-4446.0	NM_175669	319200.0	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	8.88	11.07	11.41	6.44	0.0	5.64	3.99	4.43	11.6	7.03	4.52	1.25
Merged-chr13-34180004-1	chr13	34179904	34180104	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033167, exon 11 of 11)	3' UTR (NM_001033167, exon 11 of 11)	17040.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.83	3.52	3.42	6.03	5.73	5.64	2.33	4.32	1.18	2.51	1.0	1.88
Merged-chr2-163804446-1	chr2	163804346	163804546	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16388.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	4.44	4.02	2.28	1.61	6.95	7.53	11.29	1.35	2.36	2.01	6.03	2.19
Merged-chr13-4001932-1	chr13	4001832	4002032	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56583.0	NM_031250	83428.0	Mm.313662	NM_031250	ENSMUSG00000044988	Ucn3	ucn III	urocortin 3	protein-coding	4.85	2.52	13.69	2.82	0.82	6.27	0.66	5.47	6.69	8.54	4.02	7.21
Merged-chr11-50161667-1	chr11	50161567	50161767	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290759, exon 16 of 22)	exon (NM_001290759, exon 16 of 22)	-13184.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	6.46	4.28	7.42	4.02	6.55	8.15	2.33	4.63	7.28	5.52	3.52	4.39
Merged-chr4-147404719-1	chr4	147404619	147404819	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039209, intron 1 of 2)	RLTR11B|LTR|ERVK	-148558.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	11.31	5.28	0.0	2.41	5.73	4.08	9.3	4.6	3.74	2.01	0.5	7.83
Merged-chr17-35269300-1	chr17	35269200	35269400	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6177.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	6.86	8.8	7.42	0.4	0.82	6.27	0.66	1.37	4.52	5.52	0.5	0.63
Merged-chr11-34052349-1	chr11	34052249	34052449	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	5421.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	2.02	2.01	1.14	2.01	1.64	5.64	1.99	4.07	8.26	2.51	6.03	3.45
Merged-chr2-21909720-1	chr2	21909620	21909820	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-317783.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	2.42	1.51	0.0	1.61	6.95	4.7	4.65	6.11	4.72	2.51	3.01	4.39
Merged-chr12-72364722-1	chr12	72364622	72364822	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	MTD|LTR|ERVL-MaLR	44332.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.23	0.5	0.0	1.61	2.86	2.2	2.66	2.5	8.06	4.02	9.55	5.33
Merged-chr4-101641223-1	chr4	101641123	101641323	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6560.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.65	7.04	1.14	5.23	2.86	21.64	9.3	4.93	8.06	8.03	6.03	0.0
Merged-chr7-101905073-1	chr7	101904973	101905173	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-764.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	6.06	3.52	9.13	2.01	7.36	4.39	1.33	5.86	2.75	3.51	4.02	3.13
Merged-chr1-97673623-1	chr1	97673523	97673723	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-11605.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	8.48	3.77	12.55	9.25	9.82	3.14	4.65	4.77	7.08	4.52	3.52	3.13
Merged-chr1-97650261-1	chr1	97650161	97650361	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	11415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.23	0.5	2.28	0.8	2.05	6.59	6.31	4.71	2.56	2.01	2.51	1.57
Merged-chr2-84840589-1	chr2	84840489	84840689	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001083809)	promoter-TSS (NM_001083809)	-37.0	NM_001083809	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	11.31	8.55	0.57	4.83	0.82	2.51	1.99	2.86	2.36	3.51	3.52	3.45
Merged-chr12-42159685-1	chr12	42159585	42159785	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-673628.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.83	0.5	0.57	0.0	4.09	1.25	5.65	10.68	0.79	0.0	2.01	0.31
Merged-chr10-80386680-1	chr10	80386580	80386780	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	971.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.81	4.78	3.99	0.0	3.68	1.57	0.33	1.4	4.72	0.5	2.51	8.77
Merged-chr6-91281305-1	chr6	91281205	91281405	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68541.0	NM_007992	14115.0	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	6.06	2.77	18.25	7.64	2.05	9.09	8.97	3.31	7.47	4.02	5.53	4.7
Merged-chr7-142737132-1	chr7	142737032	142737232	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57406.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	5.65	5.53	5.7	2.41	11.86	6.27	1.33	8.33	4.92	11.05	7.54	2.82
Merged-chr7-46547789-1	chr7	46547689	46547889	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013789, intron 9 of 10)	Tigger14a|DNA|TcMar-Tigger	92018.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	2.83	4.53	9.13	2.01	6.55	4.08	4.32	3.79	4.92	6.53	7.54	3.13
Merged-chr3-19522394-1	chr3	19522294	19522494	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-8853.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	4.44	3.27	1.71	4.42	1.64	1.57	5.65	3.64	4.52	5.02	7.03	4.07
Merged-chr17-27800916-1	chr17	27800816	27801016	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	19626.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	4.85	5.79	3.42	3.22	5.32	4.39	2.66	4.46	5.11	1.0	3.52	6.58
Merged-chr10-50699132-1	chr10	50699032	50699232	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198007, intron 14 of 41)	intron (NM_198007, intron 14 of 41)	106463.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.85	5.79	0.0	3.22	1.23	4.7	2.99	5.36	4.33	4.52	4.02	5.64
Merged-chr5-64625048-1	chr5	64624948	64625148	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14349.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	1.62	2.52	4.56	4.02	2.45	1.25	3.99	5.24	8.65	4.02	10.55	1.88
Merged-chr9-7349708-1	chr9	7349608	7349808	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001320077, intron 3 of 10)	intron (NM_001320077, intron 3 of 10)	2334.0	NM_008605	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	2.83	0.5	3.42	5.63	0.0	3.76	2.33	4.71	1.57	1.0	4.02	0.94
Merged-chr2-145469532-1	chr2	145469432	145469632	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	85450.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	4.85	3.77	3.42	2.82	6.14	4.08	1.33	2.83	5.11	4.02	7.54	6.58
Merged-chr7-16402116-1	chr7	16402016	16402216	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	920.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.46	3.27	2.28	4.83	3.68	5.96	1.99	3.59	4.33	7.53	4.52	4.39
Merged-chr9-106193169-1	chr9	106193069	106193269	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5770.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	7.27	3.27	7.99	4.42	5.32	3.14	4.32	5.3	3.54	6.03	1.51	6.89
Merged-chr11-85505953-1	chr11	85505853	85506053	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	152789.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.81	5.79	1.14	3.22	3.68	8.15	4.98	5.24	6.88	2.01	4.02	1.57
Merged-chr2-148395861-1	chr2	148395761	148395961	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009219, exon 1 of 1)	exon (NM_009219, exon 1 of 1)	484.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	2.02	0.5	1.14	7.24	6.55	5.33	1.0	5.66	2.56	2.51	7.03	2.82
Merged-chr3-83843441-1	chr3	83843341	83843541	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1833.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.63	4.02	1.14	5.23	6.95	3.76	3.65	5.47	5.31	2.01	7.03	1.57
Merged-chr2-156316536-1	chr2	156316436	156316636	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027585, intron 1 of 12)	intron (NM_027585, intron 1 of 12)	-3832.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	8.88	7.29	7.99	6.44	2.05	2.51	3.32	0.45	8.85	8.03	7.03	9.08
Merged-chr4-86885120-1	chr4	86885020	86885220	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290543, intron 1 of 5)	B3|SINE|B2	10706.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.21	2.77	2.28	4.83	3.27	5.33	6.64	2.02	7.08	5.02	15.58	8.46
Merged-chr9-124054600-1	chr9	124054500	124054700	+	568.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32629.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	2.42	3.02	6.28	3.62	11.45	8.47	6.31	4.77	2.36	12.05	5.02	1.88
Merged-chr7-98963075-3	chr7	98962963	98963163	+	568.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	ORR1B1|LTR|ERVL-MaLR	124218.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.21	6.54	7.99	0.8	2.86	15.05	2.33	4.99	5.51	5.02	12.06	6.58
Merged-chr7-99433065-1	chr7	99432965	99433165	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-32939.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	1.62	3.02	4.56	5.63	5.32	2.51	5.31	4.35	2.95	2.51	6.53	4.39
Merged-chr16-90072912-1	chr16	90072812	90073012	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69325.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	6.06	1.26	1.14	4.83	5.32	5.64	5.98	4.82	11.21	4.02	9.04	5.33
Merged-chr1-144256723-1	chr1	144256623	144256823	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7619.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.23	0.5	0.57	1.61	3.27	9.09	7.31	4.6	2.75	4.52	9.55	1.88
Merged-chr7-90139818-1	chr7	90139718	90139918	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	L1MB7|LINE|L1	9605.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	1.62	2.52	1.14	6.44	3.27	10.66	6.64	4.77	3.74	10.54	2.01	5.01
Merged-chr19-7496349-2	chr19	7496252	7496452	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	B2_Mm1a|SINE|B2	1914.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	9.29	5.53	9.7	4.83	9.82	3.45	6.64	3.0	12.39	10.04	8.04	8.46
Merged-chr10-61694993-1	chr10	61694893	61695093	+	568.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-521.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	6.86	5.03	9.7	9.65	4.91	5.96	3.99	4.79	13.96	8.54	14.07	5.33
Merged-chr1-56971224-1	chr1	56971124	56971324	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024325)	promoter-TSS (NR_024325)	110.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	4.85	2.01	0.0	1.61	4.5	6.59	5.65	3.67	5.7	3.51	2.51	1.88
Merged-chr5-148674467-1	chr5	148674367	148674567	+	568.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67373.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.81	0.0	0.0	1.61	0.82	0.63	3.99	0.48	10.03	11.55	11.56	5.95
Merged-chr1-7077368-2	chr1	7077276	7077476	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11544.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.85	4.02	1.14	2.41	3.27	10.03	1.99	5.5	9.24	5.52	13.06	6.27
Merged-chr17-29030785-2	chr17	29030653	29030853	+	568.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1907.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	6.46	3.77	2.85	0.8	4.09	4.39	1.99	1.21	4.92	5.52	4.52	4.39
Merged-chr1-36589190-1	chr1	36589090	36589290	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	4142.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	1.62	2.26	5.13	0.8	6.55	5.96	8.97	3.2	4.92	7.53	6.03	5.64
Merged-chr18-15665249-1	chr18	15665149	15665349	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	52797.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	3.23	2.52	0.0	2.01	6.95	6.27	9.63	5.36	0.79	4.52	1.51	2.51
Merged-chr19-45079386-2	chr19	45079286	45079486	+	568.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001362398)	TTS (NM_001362398)	3299.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	8.88	8.3	6.85	2.41	4.5	5.96	3.32	4.65	8.46	5.52	5.53	6.27
Merged-chr1-154823237-1	chr1	154823137	154823337	+	568.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97317.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	4.04	3.52	1.14	4.83	3.27	1.25	1.99	4.77	5.7	1.51	13.06	5.01
Merged-chr17-84185053-1	chr17	84184953	84185153	+	568.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2894.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.83	2.77	1.14	1.61	4.91	5.96	5.98	4.18	2.95	1.51	3.01	3.45
Merged-chr5-23617859-1	chr5	23617759	23617959	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359174, intron 2 of 16)	MIRb|SINE|MIR	-1288.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.62	5.03	1.14	0.8	7.36	6.27	4.65	6.7	4.13	3.51	11.56	3.45
Merged-chr10-93464412-1	chr10	93464312	93464512	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008517, intron 3 of 18)	intron (NM_008517, intron 3 of 18)	11016.0	NM_008517	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.4	2.52	2.28	8.85	4.91	0.94	5.31	6.64	1.57	0.0	0.0	0.0
Merged-chr12-40569737-1	chr12	40569637	40569837	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123684.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.42	2.01	1.14	1.61	13.5	2.82	5.65	4.91	1.97	4.52	2.51	2.82
Merged-chr15-102399177-1	chr15	102399077	102399277	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7139.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	2.02	1.51	1.14	1.21	2.05	7.21	1.33	3.11	3.15	7.03	7.54	5.95
Merged-chr17-56022415-1	chr17	56022315	56022515	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13214.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	2.02	2.01	1.14	2.82	3.68	3.76	0.0	5.07	3.93	2.01	3.01	0.94
Merged-chr2-14237545-1	chr2	14237445	14237645	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	8131.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.23	3.27	4.56	0.8	2.45	6.59	1.66	4.91	2.16	2.51	1.51	0.31
Merged-chr2-155336426-1	chr2	155336326	155336526	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004721, intron 3 of 11)	intron (NM_001004721, intron 3 of 11)	-20391.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	3.63	7.8	1.71	6.44	2.05	11.29	3.32	5.1	3.54	7.03	3.52	2.51
Merged-chr8-30840286-1	chr8	30840186	30840386	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-249241.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.0	1.01	2.28	0.8	0.41	1.88	1.33	1.07	12.78	8.54	7.54	6.89
Merged-chr13-17696325-1	chr13	17696225	17696425	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025479, intron 1 of 1)	intron (NM_025479, intron 1 of 1)	912.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	2.02	3.27	2.28	1.61	0.82	6.59	6.98	4.79	7.87	6.53	7.54	9.08
Merged-chr3-90612868-1	chr3	90612768	90612968	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011313)	promoter-TSS (NM_011313)	-26.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	5.25	8.55	5.13	2.82	3.68	3.14	1.99	2.1	6.88	7.53	13.57	9.71
Merged-chr14-56304373-2	chr14	56304280	56304480	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42046.0	NM_013542	14939.0	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	7.27	5.79	0.0	4.02	6.55	6.27	0.0	5.94	13.57	5.02	2.51	2.19
Merged-chrX-169269304-1	chrX	169269204	169269404	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_109847, intron 9 of 14)	intron (NR_109847, intron 9 of 14)	51068.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	4.04	2.01	7.42	3.62	0.82	5.33	1.99	6.03	2.36	7.03	6.03	1.57
Merged-chr3-94476823-1	chr3	94476723	94476923	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1472.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	1.76	0.0	1.61	6.55	0.0	0.33	4.15	2.56	6.03	2.01	1.25
Merged-chr2-6791737-1	chr2	6791637	6791837	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-70075.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.23	4.53	1.14	5.23	7.36	4.08	7.31	6.06	2.75	2.51	3.52	2.82
Merged-chr6-120493937-1	chr6	120493837	120494037	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033567)	promoter-TSS (NM_033567)	-130.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.4	2.01	2.28	3.22	2.45	3.14	3.32	3.62	1.57	2.51	3.52	2.19
Merged-chr6-52957866-1	chr6	52957766	52957966	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	LTR41B|LTR|ERVL	-48246.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	9.69	3.52	0.0	1.61	6.55	3.14	6.98	2.1	5.9	6.53	7.03	5.64
Merged-chr7-98149173-1	chr7	98149073	98149273	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007602, intron 3 of 12)	intron (NM_007602, intron 3 of 12)	-3726.0	NM_011010	18378.0	Mm.440368	NM_011010	ENSMUSG00000074006	Omp	-	olfactory marker protein	protein-coding	7.27	8.05	5.7	1.21	2.05	2.82	2.99	5.36	2.16	0.5	0.0	0.0
Merged-chr11-95232210-1	chr11	95232110	95232310	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-29319.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	8.48	6.79	11.41	0.8	8.18	3.14	2.99	4.09	6.29	3.51	5.53	7.52
Merged-chr1-85698344-1	chr1	85698244	85698444	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013673, intron 14 of 19)	intron (NM_013673, intron 14 of 19)	38262.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	4.44	2.77	7.42	3.22	3.68	5.02	3.65	4.99	4.92	4.52	5.02	2.82
Merged-chr12-79751770-1	chr12	79751670	79751870	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	172963.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	12.11	4.78	3.42	4.42	1.64	11.29	5.65	4.4	3.54	8.03	2.51	1.25
Merged-chr4-6344562-1	chr4	6344462	6344662	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-21118.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.23	4.02	2.85	4.42	2.45	3.14	1.33	4.63	10.82	2.01	5.53	6.27
Merged-chr3-28809558-1	chr3	28809458	28809658	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4050.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	4.85	0.75	2.28	1.21	8.59	7.53	1.0	1.43	0.98	1.51	3.52	1.57
Merged-chr4-88471723-1	chr4	88471623	88471823	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	8.08	3.02	9.13	2.41	7.36	5.96	6.64	4.74	7.47	3.01	4.52	6.89
Merged-chr7-96510619-1	chr7	96510519	96510719	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-168655.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	2.01	2.28	0.8	0.0	5.64	3.99	6.98	0.0	0.0	1.0	0.63
Merged-chr4-134128345-2	chr4	134128250	134128450	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080559, intron 1 of 2)	intron (NM_080559, intron 1 of 2)	403.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	7.27	10.56	9.7	6.84	7.36	11.6	6.64	6.48	8.46	7.03	10.05	9.4
Merged-chr4-59295405-1	chr4	59295305	59295505	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35354.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	4.04	3.52	3.42	1.61	4.91	6.27	1.66	4.93	6.1	3.51	2.01	2.51
Merged-chr9-52287581-1	chr9	52287481	52287681	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119470.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	2.42	7.8	3.99	2.41	2.86	3.76	9.3	4.49	7.47	9.04	9.55	4.07
Merged-chr2-35450413-1	chr2	35450313	35450513	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11036.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.85	5.79	10.27	6.03	2.05	1.88	0.0	1.79	9.44	15.06	3.01	6.58
Merged-chr6-50377074-1	chr6	50376974	50377174	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	5763.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	2.02	1.01	2.28	5.23	6.55	3.45	2.66	5.44	3.15	6.03	4.02	9.4
Merged-chrX-13344991-1	chrX	13344891	13345091	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63969.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	1.62	0.5	3.42	5.23	5.73	2.51	5.65	4.96	0.0	7.53	2.51	0.63
Merged-chr2-57335617-1	chr2	57335517	57335717	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	97235.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	2.83	4.02	6.28	4.02	7.36	3.45	10.3	4.96	7.28	4.02	11.56	2.19
Merged-chr9-120582322-1	chr9	120582222	120582422	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4991.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.44	0.25	2.28	0.8	7.77	3.76	7.31	4.93	6.29	3.51	1.51	6.89
Merged-chr10-62504891-1	chr10	62504791	62504991	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	2866.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.25	5.28	3.42	1.21	4.5	4.39	1.66	4.93	3.34	2.51	12.06	2.51
Merged-chr9-63603475-1	chr9	63603375	63603575	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	829.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	2.02	1.51	0.0	0.8	6.55	2.51	4.32	3.93	4.33	4.52	2.51	3.13
Merged-chr5-39852825-1	chr5	39852725	39852925	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-208194.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.8	2.86	1.57	2.99	5.5	5.11	2.01	5.53	2.51
Merged-chr7-63897683-1	chr7	63897583	63897783	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-19174.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.83	1.01	1.14	4.02	1.23	2.2	3.32	3.28	3.15	0.0	0.5	2.51
Merged-chr12-102389919-1	chr12	102389819	102390019	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001161365, exon 10 of 10)	exon (NM_001161365, exon 10 of 10)	49894.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.83	3.77	0.0	4.02	0.82	1.57	1.66	3.14	4.13	18.58	2.01	6.58
Merged-chr5-65198975-1	chr5	65198875	65199075	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-721.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	2.02	2.26	2.85	1.61	6.95	4.39	4.32	3.34	3.15	2.51	4.02	2.82
Merged-chr19-20797860-1	chr19	20797760	20797960	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028953, intron 17 of 20)	intron (NM_028953, intron 17 of 20)	-70304.0	NM_011921	26358.0	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	10.5	3.27	2.85	2.41	6.95	1.25	0.66	5.3	1.38	3.51	3.52	0.0
Merged-chr2-18983571-2	chr2	18983478	18983678	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14543.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	8.48	6.54	9.13	19.71	7.36	1.88	2.66	5.38	9.44	2.51	5.02	4.39
Merged-chr11-8717018-1	chr11	8716918	8717118	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52483.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.25	1.01	2.28	2.82	5.73	5.02	0.0	0.93	4.52	5.02	1.0	3.13
Merged-chr1-46905073-1	chr1	46904973	46905173	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	20703.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	1.62	1.26	0.57	3.62	4.09	0.63	3.99	5.05	0.79	1.51	0.0	1.25
Merged-chr4-150188425-1	chr4	150188325	150188525	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009802, intron 7 of 7)	B4A|SINE|B4	12710.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	6.46	2.26	0.0	1.61	4.91	5.96	5.31	3.34	0.39	0.0	0.0	1.57
Merged-chr10-75221649-1	chr10	75221549	75221749	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	9259.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	6.46	2.01	1.71	4.83	3.68	5.64	4.98	4.29	6.49	11.05	5.53	2.19
Merged-chr2-46521024-1	chr2	46520924	46521124	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	824419.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.06	1.01	2.85	0.8	5.73	2.51	2.66	1.99	0.39	1.0	1.0	0.63
Merged-chr19-38223553-1	chr19	38223453	38223653	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081075, intron 1 of 13)	intron (NM_001081075, intron 1 of 13)	579.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	5.65	3.02	2.28	3.22	4.91	5.64	2.33	3.14	6.29	3.01	5.02	6.27
Merged-chr1-186932144-2	chr1	186932049	186932249	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-35267.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	7.67	10.31	7.99	4.02	0.0	0.0	0.0	0.5	10.42	8.03	6.03	5.33
Merged-chrX-159810511-1	chrX	159810411	159810611	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 3 of 16)	intron (NM_021389, intron 3 of 16)	-29957.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	2.83	2.52	1.14	6.44	5.73	4.7	2.66	6.73	2.16	5.02	1.51	2.19
Merged-chr2-165233598-1	chr2	165233498	165233698	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174988, intron 1 of 11)	CpG	1139.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	2.02	5.28	2.28	1.61	7.36	6.27	1.33	3.62	2.95	4.52	6.03	7.83
Merged-chr11-73137363-1	chr11	73137263	73137463	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	931.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	3.23	4.02	10.27	0.0	3.68	6.9	9.63	4.77	3.93	2.51	7.03	3.13
Merged-chr13-12256508-1	chr13	12256408	12256608	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	1605.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	3.63	3.77	5.13	13.67	4.5	2.51	12.95	3.95	5.31	8.03	11.05	3.76
Merged-chr16-44136069-1	chr16	44135969	44136169	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	3190.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.86	5.03	1.14	5.63	5.32	6.27	1.66	5.33	3.74	3.01	1.51	5.01
Merged-chr5-137481340-1	chr5	137481240	137481440	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4276.0	NM_011741	22635.0	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	5.65	1.76	1.14	3.22	2.86	6.59	1.0	1.91	10.42	9.54	1.0	2.82
Merged-chr14-46965170-1	chr14	46965070	46965270	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-10242.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	1.21	1.76	0.0	3.22	7.36	1.25	0.33	4.82	0.98	4.52	3.52	0.0
Merged-chr11-20263193-1	chr11	20263093	20263293	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13769.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.81	7.04	4.56	4.83	2.86	4.39	2.33	3.93	3.93	5.02	2.01	1.25
Merged-chr1-131678769-1	chr1	131678669	131678869	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9926.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.25	1.51	0.57	1.61	3.68	1.88	2.33	4.21	7.28	3.01	6.03	7.21
Merged-chr9-47719185-1	chr9	47719085	47719285	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	99023.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.25	9.81	3.99	2.01	6.55	6.9	6.31	4.91	5.11	5.52	12.06	2.82
Merged-chr2-102201679-1	chr2	102201579	102201779	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15219.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	1.01	0.0	0.4	5.73	5.33	1.99	4.54	0.98	2.01	2.51	0.94
Merged-chr15-22129793-1	chr15	22129693	22129893	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	585191.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.81	1.51	0.0	0.8	9.0	1.88	5.31	5.41	4.92	3.01	6.53	2.82
Merged-chr16-38406879-2	chr16	38406770	38406970	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134102, intron 7 of 10)	intron (NM_134102, intron 7 of 10)	26275.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	8.08	4.02	0.57	0.0	4.5	11.29	1.0	4.96	8.26	7.03	8.04	0.63
Merged-chr12-103356020-1	chr12	103355920	103356120	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023049)	promoter-TSS (NM_023049)	-19.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	1.21	2.77	8.56	3.22	5.32	1.25	0.66	4.43	2.56	0.5	1.0	0.31
Merged-chr12-105971352-1	chr12	105971252	105971452	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38911.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	9.69	6.79	10.27	7.24	0.82	0.94	1.0	2.44	5.9	5.02	5.53	10.02
Merged-chr17-34858312-1	chr17	34858212	34858412	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105938)	promoter-TSS (NR_105938)	-680.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	7.27	2.52	6.85	1.61	2.45	3.76	3.65	3.79	1.57	6.03	5.02	5.01
Merged-chr11-24142334-1	chr11	24142234	24142434	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016707, intron 2 of 4)	intron (NM_016707, intron 2 of 4)	61639.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	3.23	6.29	1.71	9.65	13.5	3.14	6.64	3.93	8.85	3.01	2.51	2.19
Merged-chr11-98954246-1	chr11	98954146	98954346	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6225.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.02	6.29	0.0	2.82	6.14	2.82	4.65	4.23	4.13	7.53	5.02	5.95
Merged-chrX-109163974-1	chrX	109163874	109164074	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32782.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	2.42	0.75	0.0	0.8	5.73	4.7	1.66	4.71	3.15	1.0	0.5	0.0
Merged-chr18-9618995-1	chr18	9618895	9619095	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007593, exon 1 of 1)	exon (NM_007593, exon 1 of 1)	474.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	4.44	1.01	1.14	1.21	8.59	6.9	2.66	4.23	6.69	1.51	3.52	2.51
Merged-chr18-82848145-1	chr18	82848045	82848245	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7752.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.42	4.53	9.7	0.0	2.45	1.88	0.0	3.56	4.92	7.03	7.54	4.39
Merged-chr1-161748359-1	chr1	161748259	161748459	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40136.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	2.42	2.01	1.71	2.41	2.05	4.7	4.98	4.77	2.56	4.02	3.52	3.13
Merged-chr17-87636641-2	chr17	87636552	87636752	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008532, exon 2 of 10)	5' UTR (NM_008532, exon 2 of 10)	673.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.44	8.05	0.57	7.24	6.95	5.64	3.32	2.86	5.31	2.01	4.52	3.76
Merged-chr1-170478385-1	chr1	170478285	170478485	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	78725.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.5	1.14	0.0	2.45	4.08	4.32	4.82	0.98	4.52	1.51	2.19
Merged-chr2-66186323-1	chr2	66186223	66186423	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001047604, intron 27 of 28)	intron (NM_001047604, intron 27 of 28)	-61530.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	12.52	5.79	5.7	8.04	2.05	2.82	4.98	9.95	6.69	6.03	5.53	3.45
Merged-chr13-75810107-1	chr13	75810007	75810207	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-29778.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.0	0.5	1.71	0.8	0.41	0.0	1.33	0.39	9.44	11.55	9.04	5.01
Merged-chr6-97294609-1	chr6	97294509	97294709	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41829.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	9.69	15.09	9.7	0.0	16.36	27.91	5.98	7.35	23.6	16.07	7.03	8.77
Merged-chr2-76065342-1	chr2	76065242	76065442	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-83375.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	2.83	7.04	6.28	10.86	1.64	1.25	3.99	6.31	4.33	1.0	0.5	3.76
Merged-chr6-70787738-1	chr6	70787638	70787838	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	4437.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.81	7.8	8.56	2.41	4.91	3.76	1.66	4.4	3.93	1.0	2.01	1.88
Merged-chr8-119811585-1	chr8	119811485	119811685	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	ID2|SINE|ID	28994.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	2.02	1.01	5.7	1.21	3.68	5.33	3.32	7.21	7.87	5.52	4.52	5.64
Merged-chr18-38911953-1	chr18	38911853	38912053	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	6746.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	0.5	1.14	0.8	1.23	0.31	7.31	4.57	2.16	0.5	4.02	2.51
Merged-chr11-63811276-1	chr11	63811176	63811376	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111008.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.0	0.8	4.91	0.63	1.99	4.37	0.0	2.01	2.51	2.51
Merged-chr6-136807577-1	chr6	136807477	136807677	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-671.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	1.21	7.55	5.7	3.22	1.23	1.88	1.33	1.82	6.88	3.51	3.52	6.89
Merged-chr4-88503880-1	chr4	88503780	88503980	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18914.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.81	3.02	3.42	4.83	0.82	4.7	1.0	4.21	3.15	4.02	3.01	3.45
Merged-chr15-97718031-1	chr15	97717931	97718131	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008902, intron 5 of 8)	intron (NM_008902, intron 5 of 8)	3119.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	2.83	5.03	5.13	8.85	4.09	4.7	2.66	4.07	4.13	0.0	3.01	5.33
Merged-chr15-6578512-1	chr15	6578412	6578612	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1335.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	9.69	7.8	2.28	3.22	4.5	8.47	5.31	3.81	9.83	6.03	8.04	3.76
Merged-chr16-33408521-1	chr16	33408421	33408621	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	MTD|LTR|ERVL-MaLR	8076.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	5.65	3.52	10.27	0.8	5.73	6.9	1.33	1.93	8.65	3.01	11.05	4.7
Merged-chr19-14630930-1	chr19	14630830	14631030	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10D|LTR|ERVK	-32747.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.42	1.51	0.0	1.61	2.45	3.14	0.0	0.14	8.65	6.03	11.56	6.27
Merged-chr4-129385854-1	chr4	129385754	129385954	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151530, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3135.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	1.21	4.78	5.7	7.24	6.95	5.96	4.65	4.4	7.08	8.54	5.53	3.13
Merged-chr13-5601801-1	chr13	5601701	5601901	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	256291.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.04	0.0	3.99	0.4	1.64	4.08	6.64	5.78	1.38	4.52	6.03	2.51
Merged-chr7-19712613-1	chr7	19712513	19712713	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109748, intron 3 of 8)	B2_Mm1t|SINE|B2	2816.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	3.23	2.01	1.71	2.41	3.27	7.84	1.0	1.63	0.79	2.51	4.52	4.07
Merged-chr4-126683222-1	chr4	126683122	126683322	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011970, intron 1 of 5)	RMER6A|LTR|ERVK	5579.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	8.48	5.79	1.14	4.42	3.68	4.08	3.65	1.99	6.49	4.02	7.03	5.33
Merged-chr5-142702135-1	chr5	142702035	142702235	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_146257)	promoter-TSS (NM_146257)	34.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.81	5.03	7.99	2.01	4.5	4.39	1.33	0.39	4.13	2.51	1.0	3.13
Merged-chr7-29769344-1	chr7	29769244	29769444	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	792.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	7.67	7.8	13.69	6.03	5.73	3.76	5.65	3.62	4.13	4.02	7.54	1.88
Merged-chr2-122753937-1	chr2	122753837	122754037	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11422.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	8.48	3.02	5.7	3.22	6.55	2.82	1.33	7.85	10.03	9.54	8.04	4.39
Merged-chr16-94525674-1	chr16	94525574	94525774	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007834, intron 1 of 7)	L1MC4a|LINE|L1	955.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.44	5.03	5.7	0.0	3.27	2.2	2.66	4.01	7.47	6.03	1.0	5.64
Merged-chr7-58711948-1	chr7	58711848	58712048	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	53746.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.4	1.51	0.0	1.61	4.91	0.94	4.32	4.63	2.75	3.01	5.02	3.45
Merged-chr4-33251099-3	chr4	33251003	33251203	+	567.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-2316.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	8.48	9.31	3.42	1.61	6.55	4.08	5.31	4.96	6.49	5.52	10.55	10.96
Merged-chr18-38484142-1	chr18	38484042	38484242	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	65235.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	10.09	4.28	2.28	4.02	5.32	4.39	5.98	4.82	4.13	3.51	5.53	5.33
Merged-chr8-23040069-1	chr8	23039969	23040169	+	567.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	4970.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.81	0.5	0.0	0.0	2.86	1.88	0.66	1.71	8.65	9.04	2.51	5.95
Merged-chr12-80198877-1	chr12	80198777	80198977	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	61494.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.81	1.51	2.28	2.01	1.64	2.2	5.65	2.07	0.59	1.51	0.5	0.63
Merged-chr3-146047971-1	chr3	146047871	146048071	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172864, intron 19 of 22)	intron (NM_172864, intron 19 of 22)	60065.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	3.23	1.01	2.28	2.41	6.14	4.08	3.32	4.63	1.77	3.01	1.51	5.64
Merged-chr11-3130419-2	chr11	3130327	3130527	+	567.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_003517, exon 7 of 7)	non-coding (NR_003517, exon 7 of 7)	6406.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	4.85	3.27	7.99	9.65	7.36	4.39	1.66	5.61	0.39	2.01	3.01	0.63
Merged-chr5-92509773-1	chr5	92509673	92509873	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4116.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.46	4.02	7.42	0.8	6.55	6.59	9.97	5.94	3.74	9.54	3.52	5.01
Merged-chr1-24676871-1	chr1	24676771	24676971	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	9.69	2.52	0.57	4.83	8.18	5.02	3.32	4.26	5.7	8.03	5.53	5.64
Merged-chr17-24752928-1	chr17	24752828	24753028	+	567.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357340)	promoter-TSS (NM_001357340)	-60.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	7.27	2.52	1.14	1.61	6.95	2.2	2.33	1.49	7.47	15.57	11.05	3.13
Merged-chr2-122312807-2	chr2	122312723	122312923	+	567.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305262, intron 3 of 9)	intron (NM_001305262, intron 3 of 9)	907.0	NM_001305262	213696.0	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	5.25	8.55	1.71	2.41	5.73	6.9	7.31	2.19	3.93	2.51	6.53	2.51
Merged-chr7-130859007-2	chr7	130858924	130859124	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6700.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	3.23	7.29	3.99	1.61	2.86	2.2	6.64	3.64	1.97	10.54	2.51	7.52
Merged-chr2-166651852-1	chr2	166651752	166651952	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	61980.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.04	2.52	5.13	0.8	6.14	6.59	1.66	4.23	3.74	8.03	2.01	6.58
Merged-chr6-29609204-2	chr6	29609117	29609317	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361290, intron 1 of 23)	CpG	632.0	NM_177296	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.63	5.28	9.13	4.83	7.77	11.29	2.66	5.44	7.08	11.05	12.06	4.7
Merged-chr7-109493634-1	chr7	109493534	109493734	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001170913, exon 1 of 20)	5' UTR (NM_001170913, exon 1 of 20)	104.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	1.62	3.02	1.14	0.8	4.91	3.76	2.66	3.28	1.18	5.02	3.52	2.51
Merged-chr3-52729160-1	chr3	52729060	52729260	+	567.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10564.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	2.83	2.52	6.85	6.03	0.82	0.63	1.33	1.04	6.69	7.53	15.07	8.77
Merged-chr4-142084688-1	chr4	142084588	142084788	+	567.400024	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-384.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	5.65	6.79	5.7	12.47	6.95	7.53	8.3	5.07	9.05	4.02	7.54	9.08
Merged-chr3-57667184-2	chr3	57667095	57667295	+	567.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033349)	TTS (NM_001033349)	-15511.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	4.85	4.28	5.13	7.24	9.41	7.84	7.64	6.06	9.64	6.53	7.03	5.64
Merged-chr11-83639273-1	chr11	83639173	83639373	+	567.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10105.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	2.83	1.51	1.14	1.61	5.73	3.76	2.66	4.4	7.28	1.51	1.0	4.07
Merged-chr8-22139851-1	chr8	22139751	22139951	+	567.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011848, intron 11 of 15)	intron (NM_011848, intron 11 of 15)	-14784.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	2.42	7.04	3.99	3.62	5.73	7.84	4.65	5.36	0.79	0.0	0.0	2.19
Merged-chr6-115662387-2	chr6	115662292	115662492	+	567.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	B1_Mur1|SINE|Alu	13496.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	3.23	3.52	7.42	13.27	6.95	6.27	2.99	5.21	9.64	8.54	8.04	5.33
Merged-chr11-117390465-2	chr11	117390353	117390553	+	567.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-23936.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	8.08	5.79	3.42	2.01	6.14	11.29	5.31	4.68	11.21	4.52	7.03	6.89
Merged-chr11-117308936-1	chr11	117308836	117309036	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-22779.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	8.48	6.54	6.85	8.85	2.86	1.57	1.99	2.07	5.31	6.03	1.0	4.07
Merged-chr15-77782573-1	chr15	77782473	77782673	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022410, intron 15 of 40)	intron (NM_022410, intron 15 of 40)	-25563.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	3.23	2.26	0.0	0.4	4.91	1.25	0.66	3.14	3.93	4.02	3.52	2.19
Merged-chr2-52945455-1	chr2	52945355	52945555	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87587.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	2.01	2.28	1.21	5.73	2.82	1.66	5.64	3.74	4.02	4.52	6.58
Merged-chr5-108660312-1	chr5	108660212	108660412	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172997)	promoter-TSS (NM_172997)	-19.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	4.44	3.27	5.13	7.64	3.27	12.86	5.98	3.93	4.92	8.03	14.07	7.83
Merged-chr16-44142688-1	chr16	44142588	44142788	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028108, intron 1 of 4)	(C)n|Simple_repeat|Simple_repeat	2879.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	1.21	1.51	6.28	0.8	4.91	1.88	3.32	4.96	3.34	2.01	2.01	4.39
Merged-chr8-126748219-1	chr8	126748119	126748319	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-100801.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	8.88	4.53	6.85	6.03	6.14	3.14	3.99	2.44	5.11	6.03	6.53	2.19
Merged-chr11-76506988-1	chr11	76506888	76507088	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	2431.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	9.29	6.04	4.56	5.63	10.64	4.7	3.32	4.51	8.06	5.02	7.54	5.95
Merged-chr10-52331051-1	chr10	52330951	52331151	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51073.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	1.62	3.27	1.14	2.01	3.68	1.57	10.3	4.91	3.74	1.0	7.03	1.57
Merged-chr9-123478191-1	chr9	123478091	123478291	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	-510.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.85	8.05	6.28	3.22	8.59	10.98	1.99	4.21	6.1	6.03	8.54	2.51
Merged-chr10-119070610-1	chr10	119070510	119070710	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20111.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	2.42	4.28	2.85	0.8	1.64	5.02	1.0	5.19	5.7	3.01	6.53	3.76
Merged-chr14-62118744-1	chr14	62118644	62118844	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174235.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.04	4.78	3.42	7.24	1.64	2.2	3.65	6.28	1.77	1.0	1.0	1.57
Merged-chr11-106687534-1	chr11	106687434	106687634	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 6 of 14)	intron (NM_001305158, intron 6 of 14)	27747.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	2.42	1.51	7.99	5.23	3.27	4.08	4.65	5.78	7.47	3.01	5.53	5.33
Merged-chr15-81016453-1	chr15	81016353	81016553	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	38688.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.5	2.28	0.0	1.23	1.25	3.99	1.09	10.42	7.03	1.51	0.63
Merged-chr17-87283382-1	chr17	87283282	87283482	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	496.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	16.15	8.05	11.41	10.46	10.64	7.84	10.96	9.84	16.52	10.54	17.08	13.47
Merged-chr1-134989561-1	chr1	134989461	134989661	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033409, intron 17 of 17)	intron (NM_001033409, intron 17 of 17)	26996.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.81	2.01	4.56	2.41	0.82	2.82	1.33	1.46	9.64	1.0	10.05	8.14
Merged-chr19-11954514-1	chr19	11954414	11954614	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11330.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.63	2.77	2.28	2.82	4.5	2.2	4.65	5.55	0.0	0.0	0.0	0.63
Merged-chr7-45919305-1	chr7	45919205	45919405	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146346, intron 4 of 4)	intron (NM_001146346, intron 4 of 4)	1544.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	3.23	5.28	4.56	2.82	6.55	2.51	6.31	1.54	2.95	1.0	0.5	0.31
Merged-chr4-58511837-2	chr4	58511724	58511924	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	L1MB2|LINE|L1	-12421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.42	2.52	9.13	12.07	0.0	4.7	4.32	7.57	10.42	3.01	8.04	8.14
Merged-chr7-126519695-1	chr7	126519595	126519795	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16258.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	8.08	3.77	7.42	9.25	2.86	6.27	1.33	1.93	3.34	5.52	6.03	3.13
Merged-chr5-92605565-1	chr5	92605465	92605665	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175096, exon 2 of 2)	exon (NM_175096, exon 2 of 2)	2514.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	1.62	2.77	3.42	6.84	4.09	3.45	2.66	3.25	8.85	5.52	4.52	1.25
Merged-chr3-84945104-1	chr3	84945004	84945204	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-7107.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.4	1.51	3.42	2.82	2.45	4.08	5.31	4.93	2.75	6.03	7.03	0.94
Merged-chr10-19006293-1	chr10	19006193	19006393	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166402, intron 4 of 7)	MIRb|SINE|MIR	5670.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.42	5.53	1.14	1.21	10.64	10.66	0.0	0.0	3.93	4.02	1.0	1.88
Merged-chr19-3579892-1	chr19	3579792	3579992	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4143.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	7.67	5.03	18.25	5.63	3.27	12.54	1.0	5.44	9.83	6.03	3.52	6.58
Merged-chr13-120320787-1	chr13	120320687	120320887	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	3925.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	2.42	1.26	0.0	0.0	3.27	8.47	1.0	3.7	1.57	3.51	2.01	2.51
Merged-chr3-136362800-1	chr3	136362700	136362900	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-36734.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	2.42	1.76	2.28	2.41	0.82	3.76	0.0	4.93	2.56	1.0	2.01	1.88
Merged-chr8-119686384-1	chr8	119686284	119686484	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023395, intron 6 of 6)	intron (NM_023395, intron 6 of 6)	-13625.0	NM_026922	69047.0	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	4.44	3.52	1.14	1.21	7.36	3.14	2.99	3.9	4.92	7.03	6.53	2.19
Merged-chr14-69802651-1	chr14	69802551	69802751	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	2894.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	2.42	2.77	2.28	5.63	0.82	1.88	5.65	0.31	0.79	1.0	1.51	3.45
Merged-chr14-51092257-1	chr14	51092157	51092357	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	1180.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	6.46	4.28	4.56	1.21	3.68	4.39	2.99	6.17	3.34	1.0	1.0	1.88
Merged-chr3-60138521-2	chr3	60138418	60138618	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56649.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0.4	1.26	5.13	2.01	0.82	3.14	4.32	4.29	6.49	1.51	14.07	7.21
Merged-chr2-11113456-1	chr2	11113356	11113556	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58926.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	2.02	8.55	3.99	7.64	4.91	2.82	5.65	4.51	5.11	3.01	5.53	5.01
Merged-chr4-155222344-1	chr4	155222244	155222444	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	191.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.65	3.02	4.56	3.22	6.55	3.14	5.98	6.28	8.26	10.54	6.03	2.51
Merged-chr6-55054168-1	chr6	55054068	55054268	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_180678, intron 6 of 16)	intron (NM_180678, intron 6 of 16)	16167.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.0	1.01	0.0	0.0	0.82	0.0	0.0	0.39	3.34	2.01	12.06	4.07
Merged-chr1-152756650-1	chr1	152756550	152756750	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081197, exon 2 of 2)	exon (NM_001081197, exon 2 of 2)	6099.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.23	2.52	7.42	4.02	5.32	2.82	5.31	5.07	7.87	1.0	1.0	2.19
Merged-chr2-103901689-1	chr2	103901589	103901789	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131913, intron 1 of 6)	intron (NR_131913, intron 1 of 6)	738.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	1.21	1.76	2.28	0.0	5.73	1.88	1.33	4.12	0.79	0.0	1.51	3.13
Merged-chr3-57765185-1	chr3	57765085	57765285	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130743, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	29128.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.63	0.0	1.71	1.21	2.86	4.7	2.33	1.09	4.52	2.51	1.0	1.88
Merged-chr1-94056194-1	chr1	94056094	94056294	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3641.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	1.62	5.28	1.71	4.02	0.0	5.33	10.3	5.58	4.72	2.01	3.01	0.94
Merged-chr8-126751597-1	chr8	126751497	126751697	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97423.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.81	1.01	4.56	0.8	6.55	3.76	4.65	5.55	3.93	4.02	0.0	0.63
Merged-chr3-15470289-2	chr3	15470196	15470396	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43869.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	8.88	8.05	10.27	8.85	9.82	8.78	14.62	0.0	12.78	7.03	9.04	8.77
Merged-chr12-52615904-1	chr12	52615804	52616004	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13582.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.0	4.02	6.85	3.22	0.0	0.0	1.66	1.79	8.46	7.03	13.06	5.01
Merged-chr1-151688524-1	chr1	151688424	151688624	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	T-rich|Low_complexity|Low_complexity	66203.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	3.63	6.29	3.42	10.05	0.82	3.14	1.66	0.36	8.85	9.54	8.54	2.19
Merged-chr3-69709874-1	chr3	69709774	69709974	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12181.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.81	0.0	0.0	1.61	1.23	5.96	6.31	3.45	2.56	2.01	5.53	5.64
Merged-chr15-99825200-2	chr15	99825087	99825287	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113545, intron 3 of 10)	ID_B1|SINE|B4	-5038.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	10.5	8.8	2.28	7.64	6.14	4.39	1.66	4.99	3.34	7.03	6.53	4.39
Merged-chr8-83108754-1	chr8	83108654	83108854	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-56598.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.86	1.01	2.28	8.04	6.55	2.82	4.65	4.37	0.2	1.0	1.0	1.25
Merged-chr10-75834040-1	chr10	75833940	75834140	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010361, intron 1 of 4)	intron (NM_010361, intron 1 of 4)	841.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	3.23	4.78	1.14	4.02	9.41	5.64	6.31	4.54	6.1	6.53	6.53	4.07
Merged-chr17-79568667-1	chr17	79568567	79568767	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46233.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	3.23	1.51	2.28	7.24	5.73	2.51	4.98	5.44	3.74	7.53	6.03	2.19
Merged-chr9-60687587-1	chr9	60687487	60687687	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001146047)	promoter-TSS (NM_001146047)	-53.0	NM_001146047	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	3.23	7.04	3.42	4.02	3.68	7.21	0.33	4.18	3.74	10.04	4.02	3.45
Merged-chr2-34958246-1	chr2	34958146	34958346	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009421, intron 4 of 10)	intron (NM_009421, intron 4 of 10)	3526.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	3.23	5.53	5.7	1.61	0.82	13.48	0.0	1.6	11.41	9.54	4.52	0.0
Merged-chr11-120582931-1	chr11	120582831	120583031	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1311.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	11.71	4.28	0.0	5.23	5.73	8.78	0.66	3.9	6.1	4.52	5.02	3.13
Merged-chr2-32992298-1	chr2	32992198	32992398	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355201, intron 26 of 29)	intron (NM_001355201, intron 26 of 29)	-10215.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	1.62	1.26	5.7	4.02	5.32	3.45	1.0	5.02	1.38	2.51	3.52	3.13
Merged-chr4-11704350-1	chr4	11704250	11704450	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010276)	promoter-TSS (NM_010276)	-97.0	NM_010276	14579.0	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	5.65	4.28	2.85	1.21	2.45	12.23	6.98	3.45	4.72	1.51	5.53	5.01
Merged-chr4-156252805-1	chr4	156252705	156252905	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355709, intron 2 of 10)	intron (NM_001355709, intron 2 of 10)	2537.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.4	1.51	0.0	1.61	6.14	4.7	4.32	3.5	6.1	15.57	12.06	5.01
Merged-chr8-83655361-1	chr8	83655261	83655461	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018771, intron 1 of 6)	B4|SINE|B4	2683.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	7.27	3.77	1.14	1.21	5.32	4.08	1.33	5.1	2.16	3.51	3.01	3.13
Merged-chrX-140479390-1	chrX	140479290	140479490	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	22787.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	8.08	1.51	0.0	1.61	4.09	3.45	0.66	5.97	8.06	6.03	3.52	5.64
Merged-chr4-11089252-1	chr4	11089152	11089352	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamSINE1|SINE|tRNA	-13047.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.81	1.51	1.14	6.44	6.14	0.94	4.98	6.17	6.88	5.02	7.54	0.94
Merged-chr13-23687273-1	chr13	23687173	23687373	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3074.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	2.02	3.52	3.42	0.8	5.32	0.63	1.33	1.12	2.36	1.0	1.51	0.63
Merged-chr2-120094285-1	chr2	120094185	120094385	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	60290.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.63	5.53	5.7	3.22	4.91	4.39	1.66	5.27	4.13	9.54	8.04	3.76
Merged-chr15-59646399-1	chr15	59646299	59646499	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2255.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.06	3.02	2.85	6.03	5.73	6.59	0.33	3.67	8.65	7.53	7.54	5.64
Merged-chr8-31033504-1	chr8	31033404	31033604	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56023.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	4.04	2.52	3.42	3.62	6.95	1.25	6.64	5.13	8.06	4.02	7.54	6.58
Merged-chr12-102176038-1	chr12	102175938	102176138	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	47311.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.81	0.75	0.0	0.0	4.5	3.45	4.32	5.8	0.0	1.0	0.0	0.94
Merged-chr10-17422770-1	chr10	17422670	17422870	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-300458.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.44	1.51	1.14	0.0	4.5	6.59	1.99	4.01	4.33	2.01	0.5	3.13
Merged-chr4-54767338-1	chr4	54767238	54767438	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-180607.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.02	3.27	2.28	5.63	2.05	0.94	3.99	3.84	0.2	1.0	0.0	0.31
Merged-chr2-101886639-1	chr2	101886539	101886739	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029635, intron 1 of 5)	intron (NM_029635, intron 1 of 5)	377.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	7.67	1.76	3.42	4.42	3.68	3.76	4.32	7.35	4.92	3.51	3.01	4.7
Merged-chr19-11777411-1	chr19	11777311	11777511	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_152220)	TTS (NM_152220)	6996.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	4.04	2.77	3.99	4.42	2.45	6.27	1.66	3.59	3.54	8.54	3.01	2.51
Merged-chr11-76699825-1	chr11	76699725	76699925	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19952.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	4.44	7.8	2.28	2.01	10.23	7.21	2.66	4.57	16.52	6.03	10.05	0.94
Merged-chr7-128133207-1	chr7	128133107	128133307	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021334, intron 6 of 29)	intron (NM_021334, intron 6 of 29)	3639.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	6.46	3.27	5.7	1.61	5.32	4.39	2.66	3.7	7.28	7.03	4.52	6.89
Merged-chr14-46873935-1	chr14	46873835	46874035	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-9030.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.62	4.78	5.13	2.01	10.23	4.7	3.32	6.42	5.7	7.53	7.54	5.95
Merged-chr18-64758757-1	chr18	64758657	64758857	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-97757.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	3.63	5.79	0.0	4.42	5.32	6.27	2.99	1.88	9.64	5.52	6.53	6.89
Merged-chr10-127553674-1	chr10	127553574	127553774	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 59 of 88)	intron (NM_008512, intron 59 of 88)	-19115.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.42	6.54	2.28	0.4	1.64	5.64	0.66	1.29	3.74	4.02	3.52	1.88
Merged-chr5-64424957-1	chr5	64424857	64425057	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	42985.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.81	0.5	4.56	1.61	9.0	1.88	4.65	4.04	8.85	6.53	9.04	3.76
Merged-chr9-46091156-1	chr9	46091056	46091256	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	MTB_Mm|LTR|ERVL-MaLR	78336.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	3.23	7.55	9.13	1.61	2.45	5.33	4.65	1.37	9.44	2.01	0.0	3.76
Merged-chr19-10020152-1	chr19	10020052	10020252	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	ID_B1|SINE|B4	1958.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	2.02	4.28	17.68	2.82	5.32	10.98	5.65	3.56	9.24	5.52	3.01	3.76
Merged-chr16-73985118-1	chr16	73985018	73985218	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358493, intron 8 of 28)	intron (NM_001358493, intron 8 of 28)	356949.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	2.45	4.7	5.98	11.02	4.92	8.54	2.01	0.94
Merged-chr11-113133558-1	chr11	113133458	113133658	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	68280.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.81	0.0	0.0	0.0	1.23	1.88	0.0	0.87	10.23	4.52	2.51	5.95
Merged-chrX-48124914-1	chrX	48124814	48125014	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289729, intron 12 of 20)	intron (NM_001289729, intron 12 of 20)	16189.0	NM_133213	170745.0	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	5.65	1.51	6.85	0.0	4.91	4.39	1.33	9.2	3.54	6.53	5.02	7.83
Merged-chr3-96601513-2	chr3	96601416	96601616	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163170, intron 1 of 5)	intron (NM_001163170, intron 1 of 5)	383.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	8.88	7.55	2.85	5.23	13.91	10.98	8.3	6.7	10.03	5.02	3.52	3.45
Merged-chr15-97110845-1	chr15	97110745	97110945	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54889.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	4.44	5.03	3.99	2.41	5.32	4.08	5.65	4.37	5.11	0.5	4.02	5.95
Merged-chr6-71419073-1	chr6	71418973	71419173	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	21564.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	2.02	3.77	1.14	4.42	4.09	3.14	0.66	4.93	4.33	2.01	0.5	0.31
Merged-chr2-146385813-1	chr2	146385713	146385913	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	126191.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	2.42	0.75	1.14	0.0	10.23	5.02	1.33	5.44	0.39	0.0	2.51	0.31
Merged-chr3-104639663-1	chr3	104639563	104639763	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	999.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	2.83	4.78	1.14	6.03	2.86	5.02	3.99	7.82	1.38	1.0	1.51	4.7
Merged-chr2-117413525-1	chr2	117413425	117413625	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70648.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.81	2.77	14.26	2.41	4.09	4.08	1.33	4.71	4.52	10.04	1.51	4.07
Merged-chr4-106301252-1	chr4	106301152	106301352	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-14961.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	2.02	0.75	5.7	2.41	0.41	5.64	1.33	4.49	0.39	4.52	0.5	1.25
Merged-chr11-3292261-1	chr11	3292161	3292361	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019574, intron 1 of 3)	intron (NM_019574, intron 1 of 3)	1804.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	5.65	5.79	0.57	0.8	5.32	0.94	1.99	5.38	3.15	5.52	2.51	4.39
Merged-chr7-30419014-1	chr7	30418914	30419114	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011827, intron 1 of 3)	RMER4B|LTR|ERVK	840.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	4.04	3.52	2.28	2.01	3.27	2.82	4.65	1.57	4.72	13.56	10.05	5.33
Merged-chr4-117267522-1	chr4	117267422	117267622	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029589, intron 3 of 3)	intron (NM_029589, intron 3 of 3)	15182.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	7.27	7.8	2.85	1.61	6.95	5.02	0.33	6.11	5.51	2.51	7.03	7.21
Merged-chr11-118739671-1	chr11	118739571	118739771	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024931, intron 2 of 14)	MLT1I|LTR|ERVL-MaLR	21370.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	4.85	5.03	5.13	3.22	4.09	6.9	0.66	4.71	7.28	6.53	3.52	5.01
Merged-chr10-29445625-1	chr10	29445525	29445725	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83183.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	2.83	2.26	0.0	1.61	1.64	3.76	4.65	4.63	6.1	1.0	1.0	3.13
Merged-chr2-155637584-1	chr2	155637484	155637684	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019828, intron 16 of 18)	intron (NM_019828, intron 16 of 18)	14704.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	4.04	3.27	4.56	3.22	5.32	3.76	1.66	4.82	4.52	2.01	8.04	10.65
Merged-chr4-115890803-1	chr4	115890703	115890903	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001357060, exon 1 of 2)	5' UTR (NM_001357060, exon 1 of 2)	137.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	3.63	1.01	2.28	2.01	5.32	2.51	3.99	4.12	0.79	0.5	0.0	2.19
Merged-chr11-75976885-1	chr11	75976785	75976985	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23027.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	2.42	2.52	3.99	0.8	4.91	5.33	2.33	3.7	1.57	2.01	3.01	0.63
Merged-chr7-73648183-1	chr7	73648083	73648283	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38380.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	4.04	2.77	3.99	0.4	3.68	6.59	1.66	3.42	10.23	4.52	1.0	5.64
Merged-chr19-12722484-1	chr19	12722384	12722584	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	26694.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	10.09	6.54	5.7	9.25	4.91	1.88	2.66	5.36	5.7	6.03	4.52	7.52
Merged-chr17-66112431-2	chr17	66112334	66112534	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037757, intron 1 of 10)	RMER15|LTR|ERVL	789.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	6.46	10.31	4.56	2.41	8.59	18.81	6.64	2.97	9.83	12.05	8.04	2.19
Merged-chr10-68373120-1	chr10	68373020	68373220	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51978.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	2.02	2.01	5.7	2.82	4.09	3.14	1.99	5.19	6.49	4.52	11.56	5.95
Merged-chr14-54936983-1	chr14	54936883	54937083	+	566.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029390, intron 1 of 3)	intron (NM_029390, intron 1 of 3)	486.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	3.63	3.02	4.56	3.62	4.09	3.76	4.65	5.07	5.51	0.5	4.52	7.21
Merged-chr15-63555110-1	chr15	63555010	63555210	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-75502.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.21	2.52	0.0	3.22	6.14	0.0	5.31	5.16	3.34	0.5	6.03	1.25
Merged-chr14-7850949-1	chr14	7850849	7851049	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081427, intron 1 of 45)	RMER5|LTR|ERV1	32992.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	2.02	3.52	0.0	3.22	4.09	2.82	5.31	3.98	1.18	10.04	4.52	5.01
Merged-chr1-136582776-1	chr1	136582676	136582876	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-42125.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	2.02	6.79	6.28	8.04	3.68	5.96	7.64	4.82	7.67	4.02	3.52	4.7
Merged-chr19-32932753-2	chr19	32932666	32932866	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175189.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.27	7.8	1.14	6.03	3.27	6.27	5.31	11.52	6.88	9.04	4.52	4.07
Merged-chr1-85650008-2	chr1	85649908	85650108	+	566.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313712)	promoter-TSS (NM_001313712)	20.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	10.09	4.53	10.27	23.33	8.59	9.72	11.29	4.68	9.64	6.03	3.52	7.52
Merged-chr4-155733393-2	chr4	155733276	155733476	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-1428.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	4.44	6.79	0.57	3.22	4.91	0.94	1.66	3.36	8.65	7.03	8.54	8.14
Merged-chr1-132264833-1	chr1	132264733	132264933	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-33793.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	5.65	1.26	1.14	0.8	2.45	6.9	5.98	4.23	1.77	3.01	7.03	1.57
Merged-chr19-4048037-1	chr19	4047937	4048137	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5816.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	6.46	2.52	1.71	2.82	6.95	5.64	3.32	4.77	6.1	9.54	10.55	5.01
Merged-chr11-47439532-1	chr11	47439432	47439632	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60230.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	5.65	6.29	1.14	3.62	9.0	2.51	3.65	4.65	5.51	3.51	5.02	0.0
Merged-chr4-116709049-2	chr4	116708919	116709119	+	566.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	424.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	2.42	8.55	6.28	7.24	6.14	7.53	4.65	5.13	2.36	7.03	5.02	3.76
Merged-chr4-63215942-1	chr4	63215842	63216042	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025685, intron 1 of 60)	CpG-9975	530.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.04	1.01	4.56	4.02	5.73	3.76	0.66	5.97	1.38	9.04	8.54	5.95
Merged-chr18-58599276-1	chr18	58599176	58599376	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 5 of 9)	intron (NM_001081072, intron 5 of 9)	43036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	2.42	1.51	3.42	1.21	1.64	6.9	4.32	4.15	3.54	6.53	7.54	2.19
Merged-chr2-181737784-2	chr2	181737689	181737889	+	566.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22099.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	8.48	9.56	9.13	3.22	5.73	5.33	0.66	5.38	9.64	5.52	4.02	4.39
Merged-chr9-98614196-1	chr9	98614096	98614296	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12517.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	2.02	1.76	2.28	2.41	1.64	7.84	3.32	4.71	2.56	7.03	11.56	7.83
Merged-chr7-118283378-1	chr7	118283278	118283478	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	39471.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	2.42	1.26	5.7	4.02	7.36	4.39	4.65	4.71	3.15	3.01	3.52	1.25
Merged-chr7-27402885-1	chr7	27402785	27402985	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_032610, exon 17 of 36)	exon (NM_032610, exon 17 of 36)	-6332.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.4	1.51	0.0	3.22	3.27	5.33	3.99	4.51	5.51	1.0	6.53	5.64
Merged-chr7-48881650-1	chr7	48881550	48881750	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-54.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	7.27	6.79	0.0	8.85	10.64	10.66	4.98	6.36	8.65	15.57	15.07	8.46
Merged-chr13-9766233-1	chr13	9766133	9766333	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199141)	promoter-TSS (NM_001199141)	-912.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.85	4.02	2.85	7.24	4.91	3.45	6.31	5.24	6.88	7.53	15.58	3.45
Merged-chr2-167250863-1	chr2	167250763	167250963	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10326.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.81	3.02	3.42	2.41	11.45	2.51	5.65	4.15	2.95	4.52	3.52	8.77
Merged-chr13-69655591-2	chr13	69655483	69655683	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	43567.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	5.65	4.02	10.84	2.82	7.77	3.76	3.32	4.6	1.18	2.01	5.53	3.13
Merged-chr16-17127486-1	chr16	17127386	17127586	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2284.0	NM_001358255	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	5.25	2.01	5.7	2.41	4.91	4.39	3.65	4.85	8.26	5.02	9.04	6.27
Merged-chr14-43987646-2	chr14	43987532	43987732	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	18786.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	3.63	2.77	2.28	4.02	6.95	8.47	3.99	5.1	9.83	7.03	3.52	1.88
Merged-chr7-25424606-1	chr7	25424506	25424706	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-11720.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	6.06	6.54	4.56	6.84	8.18	3.45	1.33	4.32	3.54	14.06	3.01	5.01
Merged-chr14-22308233-1	chr14	22308133	22308333	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	234565.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.02	10.82	0.57	8.85	4.5	1.88	2.33	1.85	3.15	1.51	3.01	4.39
Merged-chr8-111030229-1	chr8	111030129	111030329	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190786, intron 1 of 11)	B1_Mur1|SINE|Alu	1522.0	NM_001190786	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	4.85	3.02	12.55	1.61	0.0	1.25	0.0	0.5	9.64	1.0	9.55	3.13
Merged-chr15-73643028-1	chr15	73642928	73643128	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18284.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.06	4.02	4.56	2.82	7.77	5.64	6.31	2.58	5.9	2.01	6.03	3.13
Merged-chr2-59137487-1	chr2	59137387	59137587	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	23196.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	2.42	0.5	1.14	0.8	4.09	3.14	4.65	6.25	8.26	3.01	4.02	1.88
Merged-chr18-4068868-1	chr18	4068768	4068968	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96964.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	2.02	5.28	6.28	0.8	5.73	6.27	2.99	6.87	8.06	7.03	13.06	7.83
Merged-chr13-52633225-1	chr13	52633125	52633325	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 9 of 13)	RSINE1|SINE|B4	36343.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	2.28	1.61	1.23	0.63	0.0	1.37	2.95	5.02	2.01	4.07
Merged-chr2-36203506-1	chr2	36203406	36203606	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26920.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	1.21	2.26	3.42	2.41	0.0	3.45	4.65	4.43	4.52	11.55	5.02	5.01
Merged-chr2-144730518-1	chr2	144730418	144730618	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-93148.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	1.62	1.51	0.0	4.42	7.36	3.76	3.65	4.46	5.11	3.51	2.01	1.57
Merged-chr11-4188053-1	chr11	4187953	4188153	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1220.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	3.63	5.53	0.0	0.0	7.77	5.02	6.98	4.71	3.74	9.54	6.03	5.95
Merged-chr2-116907406-1	chr2	116907306	116907506	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040335, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7254.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.23	2.01	2.28	2.41	6.55	2.82	2.66	5.27	2.56	1.51	2.51	0.31
Merged-chr10-80881479-1	chr10	80881379	80881579	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081688, intron 1 of 17)	B3|SINE|B2	1663.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	8.48	2.01	0.0	1.61	3.68	10.66	4.32	1.68	12.0	5.52	3.01	5.33
Merged-chrX-78518567-1	chrX	78518467	78518667	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027322, intron 2 of 3)	intron (NM_027322, intron 2 of 3)	65238.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	3.63	2.77	8.56	6.44	2.86	2.51	5.98	15.45	8.26	3.51	5.02	3.13
Merged-chr4-100028873-1	chr4	100028773	100028973	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66918.0	NM_013845	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	7.27	2.52	4.56	8.04	0.82	5.02	3.32	5.41	11.21	2.51	8.04	1.88
Merged-chr1-183637142-1	chr1	183637042	183637242	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0.81	0.5	0.0	2.01	1.64	3.14	0.66	0.87	8.46	9.54	10.05	4.7
Merged-chr6-99211887-1	chr6	99211787	99211987	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	54628.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.02	1.51	1.14	0.4	3.68	5.02	12.95	6.39	3.93	3.51	6.53	5.64
Merged-chr4-111886783-1	chr4	111886683	111886883	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16013.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	4.04	1.01	5.13	3.62	4.09	2.82	4.32	7.77	9.05	11.55	10.55	2.51
Merged-chr4-94017948-1	chr4	94017848	94018048	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	538848.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	3.23	3.52	2.28	1.61	2.86	10.03	3.32	5.8	0.79	1.51	0.0	1.25
Merged-chr2-158375614-1	chr2	158375514	158375714	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175692)	promoter-TSS (NM_175692)	-24.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	4.44	2.52	1.71	2.41	9.0	1.25	5.98	5.83	8.46	4.02	6.53	3.13
Merged-chr6-92787523-1	chr6	92787423	92787623	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175314, intron 27 of 29)	intron (NM_175314, intron 27 of 29)	-81339.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.81	2.52	0.0	4.02	0.41	1.57	5.98	3.36	0.98	0.5	1.0	0.31
Merged-chr13-12423407-1	chr13	12423307	12423507	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144835, intron 28 of 44)	intron (NM_144835, intron 28 of 44)	28032.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	2.02	2.52	0.0	3.22	4.09	5.02	3.32	6.03	4.33	3.51	8.04	6.89
Merged-chr3-105811327-1	chr3	105811227	105811427	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4240.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	2.42	3.02	6.85	3.22	5.32	6.9	4.65	4.26	6.49	5.02	6.53	6.58
Merged-chr3-31424883-1	chr3	31424783	31424983	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-114564.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	1.14	0.0	2.45	0.31	5.31	4.04	0.98	0.0	0.5	2.19
Merged-chr5-134486099-1	chr5	134485999	134486199	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29383.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	11.31	5.79	2.28	5.23	2.86	4.08	0.66	4.6	9.64	5.52	13.57	2.51
Merged-chr14-37033419-1	chr14	37033319	37033519	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15595.0	NM_001301694	57811.0	Mm.20460	NM_021340	ENSMUSG00000021804	Rgr	-	retinal G protein coupled receptor	protein-coding	0.81	3.52	1.14	0.8	6.55	6.59	8.97	3.79	5.11	7.03	8.54	2.82
Merged-chr6-149342914-1	chr6	149342814	149343014	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	33500.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.23	5.03	1.14	2.41	3.27	5.64	3.32	1.54	7.47	9.54	6.03	11.28
Merged-chr10-120364327-1	chr10	120364227	120364427	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-25196.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	2.02	4.02	1.14	3.22	5.32	5.96	5.65	3.56	4.52	8.54	2.51	5.64
Merged-chr15-80026389-1	chr15	80026289	80026489	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11581.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.81	4.28	2.28	1.61	11.05	6.27	6.31	5.36	2.16	1.51	1.51	1.57
Merged-chr9-32582245-1	chr9	32582145	32582345	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40793.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.04	5.03	1.14	5.63	2.86	4.39	2.33	8.07	1.38	3.01	1.0	3.45
Merged-chr4-107167918-1	chr4	107167818	107168018	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025617, intron 2 of 4)	intron (NM_025617, intron 2 of 4)	10448.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.0	3.02	1.14	2.41	4.91	6.9	4.65	4.6	2.56	3.01	3.01	3.76
Merged-chr7-43531048-1	chr7	43530948	43531148	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111058, intron 3 of 6)	L1MB7|LINE|L1	2123.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	4.85	3.02	0.0	3.22	8.18	5.02	2.33	4.07	6.88	5.52	3.01	5.01
Merged-chr9-70252190-1	chr9	70252090	70252290	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	44840.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	6.06	4.02	14.26	2.82	4.09	15.05	1.33	1.93	4.33	4.02	0.5	4.39
Merged-chr14-62864453-1	chr14	62864353	62864553	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-1089.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	3.23	4.02	6.85	9.25	1.64	3.45	3.99	4.96	6.1	9.54	5.02	4.07
Merged-chr9-99088361-1	chr9	99088261	99088461	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 8 of 23)	intron (NM_029094, intron 8 of 23)	51850.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	1.62	5.53	6.85	0.8	5.73	1.88	4.65	4.18	1.57	3.01	2.51	3.76
Merged-chr17-47767702-1	chr17	47767602	47767802	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18042.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.62	3.52	2.28	2.41	4.5	3.76	1.0	5.97	3.34	1.51	3.01	2.51
Merged-chr5-36710529-1	chr5	36710429	36710629	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14508.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.46	4.02	3.42	2.82	9.41	3.76	3.32	6.08	7.87	2.51	5.02	4.39
Merged-chr13-23570763-1	chr13	23570663	23570863	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178196)	promoter-TSS (NM_178196)	457.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	7.67	9.31	5.7	4.02	3.27	1.57	5.31	3.34	6.88	9.54	5.53	6.58
Merged-chr4-130799792-2	chr4	130799695	130799895	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7258.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.86	5.03	9.13	9.25	8.18	8.78	6.98	13.46	6.1	1.51	5.53	15.04
Merged-chr4-44911167-1	chr4	44911067	44911267	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-70227.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	3.23	6.54	3.42	8.04	4.91	4.08	6.98	4.32	8.46	3.01	5.02	0.31
Merged-chr2-142865615-1	chr2	142865515	142865715	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	35849.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	1.62	2.52	2.28	0.8	0.0	0.63	6.64	8.52	0.98	0.5	0.5	0.31
Merged-chr1-55618992-1	chr1	55618892	55619092	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	213046.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	0.5	0.0	0.0	2.05	4.08	1.66	4.12	0.39	0.5	0.5	0.63
Merged-chr2-153158515-2	chr2	153158402	153158602	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2799.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.04	3.52	3.42	0.8	5.32	6.27	1.0	4.6	7.47	9.04	13.06	4.7
Merged-chr11-101265427-1	chr11	101265327	101265527	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175638, exon 6 of 19)	exon (NM_175638, exon 6 of 19)	4860.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	4.85	3.02	3.99	4.02	5.73	3.76	1.33	4.09	2.95	9.04	5.53	3.45
Merged-chr17-28904929-1	chr17	28904829	28905029	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045457)	promoter-TSS (NR_045457)	-336.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	3.63	6.29	3.42	2.82	2.05	1.88	0.66	5.36	11.01	9.04	7.03	1.57
Merged-chr12-69890288-1	chr12	69890188	69890388	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201519, intron 1 of 30)	L2a|LINE|L2	-2817.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	2.02	2.77	2.85	2.41	1.64	5.96	0.0	4.4	1.38	0.5	1.51	0.63
Merged-chr2-92389287-1	chr2	92389187	92389387	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011162, intron 2 of 11)	CpG	-1841.0	NR_105966	102466783.0		NR_105966	ENSMUSG00000099093	Mir7000	Gm27338|mmu-mir-7000	microRNA 7000	ncRNA	2.42	3.77	0.57	1.61	5.73	3.14	3.32	2.64	4.33	5.02	2.51	1.57
Merged-chr17-10772448-1	chr17	10772348	10772548	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	67743.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	1.76	1.14	1.21	6.55	4.7	2.33	3.76	3.93	5.02	3.52	2.82
Merged-chr9-70502781-2	chr9	70502683	70502883	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357494, intron 2 of 14)	intron (NM_001357494, intron 2 of 14)	595.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	5.65	6.29	3.99	4.83	6.14	6.9	2.99	5.69	6.49	5.02	7.54	6.27
Merged-chr17-34578236-1	chr17	34578136	34578336	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010929, intron 18 of 29)	intron (NM_010929, intron 18 of 29)	-11570.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	13.33	2.77	3.42	1.21	5.73	7.21	2.66	3.06	8.06	8.54	3.52	3.13
Merged-chr10-81518690-1	chr10	81518590	81518790	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	B3|SINE|B2	5535.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	1.62	2.52	0.0	1.61	5.73	5.02	2.66	3.34	9.83	8.03	5.02	1.25
Merged-chr13-114370281-1	chr13	114370181	114370381	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010887, intron 1 of 4)	MTD|LTR|ERVL-MaLR	17813.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	4.85	5.79	11.98	9.25	0.82	0.0	0.0	0.48	1.57	1.0	3.52	0.63
Merged-chr16-92732635-1	chr16	92732535	92732735	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-35306.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	1.01	0.0	1.61	2.45	4.39	5.98	4.74	1.97	6.53	3.01	1.88
Merged-chr2-36230014-1	chr2	36229914	36230114	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	-412.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	1.62	1.51	1.14	4.02	8.18	9.72	1.33	0.22	2.95	3.51	4.52	2.19
Merged-chr9-62810788-1	chr9	62810688	62810888	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010193, intron 1 of 1)	intron (NM_010193, intron 1 of 1)	860.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	2.02	1.51	2.28	2.01	5.73	3.14	0.66	4.93	3.93	6.03	2.01	0.31
Merged-chr3-105836185-1	chr3	105836085	105836285	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20618.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	6.46	5.03	10.84	4.02	8.18	5.64	4.65	11.27	8.85	6.03	11.56	6.58
Merged-chr12-4871671-1	chr12	4871571	4871771	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033488, intron 1 of 13)	intron (NM_001033488, intron 1 of 13)	2688.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	4.44	3.27	3.42	5.63	4.09	5.02	2.33	4.96	5.9	3.01	13.06	4.39
Merged-chr6-123261701-1	chr6	123261601	123261801	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-406.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	2.83	5.53	2.28	4.42	7.36	8.15	2.33	4.26	7.87	12.55	6.03	2.82
Merged-chr12-104247751-1	chr12	104247651	104247851	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033450)	promoter-TSS (NR_033450)	-145.0	NR_033450	546546.0	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	4.85	8.55	6.28	0.4	2.05	10.66	1.99	2.64	10.82	1.51	7.54	3.76
Merged-chr4-110833019-1	chr4	110832919	110833119	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 3 of 12)	RMER19B|LTR|ERVK	435321.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	8.88	3.52	1.14	8.04	0.0	0.63	1.0	0.31	0.0	0.0	1.0	0.63
Merged-chr5-99230530-2	chr5	99230394	99230594	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 8 of 13)	L1ME2|LINE|L1	22433.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.62	6.79	1.14	0.0	2.05	4.7	0.66	0.95	5.31	7.53	4.02	4.07
Merged-chrX-155623712-1	chrX	155623612	155623812	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001093750)	promoter-TSS (NM_001093750)	-385.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	6.06	3.02	0.57	5.23	9.82	1.57	5.31	2.61	1.57	1.51	5.02	2.51
Merged-chr2-75687558-1	chr2	75687458	75687658	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	17105.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	8.08	4.53	6.85	4.02	4.09	5.02	1.66	9.67	9.24	6.03	2.01	4.7
Merged-chr9-50601849-1	chr9	50601749	50601949	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025848, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2000.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	5.65	3.77	2.85	4.83	10.64	4.39	2.33	4.63	3.15	8.03	6.03	4.07
Merged-chr9-121477428-2	chr9	121477296	121477496	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18298.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	4.04	4.02	1.14	4.42	2.05	4.7	4.32	3.53	4.33	5.52	6.03	6.27
Merged-chr19-59342062-2	chr19	59341972	59342172	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	3708.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	7.27	2.77	5.13	6.44	5.73	4.39	3.65	5.33	10.23	0.5	10.05	2.82
Merged-chr7-120327740-1	chr7	120327640	120327840	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177213)	promoter-TSS (NM_177213)	-944.0	NM_177213	320631.0	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	6.86	4.02	3.42	1.21	4.91	0.94	0.0	3.84	3.74	1.51	4.02	4.07
Merged-chr1-170292621-1	chr1	170292521	170292721	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	13711.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	9.29	3.77	6.28	13.27	5.73	5.33	1.0	5.19	7.08	6.53	7.03	5.01
Merged-chr5-28166833-1	chr5	28166733	28166933	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010134, exon 1 of 2)	exon (NM_010134, exon 1 of 2)	1137.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	2.83	1.26	0.57	4.02	6.55	3.14	2.66	3.08	2.75	2.51	4.02	4.07
Merged-chr9-70841567-1	chr9	70841467	70841667	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	L1ME3|LINE|L1	93241.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	1.21	7.04	0.0	2.41	6.95	3.76	3.32	4.99	3.93	2.01	2.01	7.21
Merged-chr8-88175437-1	chr8	88175337	88175537	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-23776.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	2.02	1.01	3.42	2.82	5.32	5.64	2.99	5.41	0.0	1.0	0.5	0.0
Merged-chr14-37164771-1	chr14	37164671	37164871	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-29449.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	4.04	3.27	0.57	3.62	4.09	2.51	4.32	4.46	3.74	4.52	7.54	1.57
Merged-chr13-107893227-1	chr13	107893127	107893327	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-3163.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.85	3.52	5.7	2.41	4.5	0.31	0.66	2.05	3.34	7.03	3.52	0.31
Merged-chr10-122528434-1	chr10	122528334	122528534	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41457.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	1.62	0.5	0.0	1.61	2.05	1.88	4.98	3.56	1.77	6.03	6.03	2.82
Merged-chr4-129065737-1	chr4	129065637	129065837	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	ID4_|SINE|ID	7466.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	8.08	3.27	3.99	2.41	8.18	4.39	9.63	5.21	9.05	12.05	3.52	3.45
Merged-chr2-116066249-1	chr2	116066149	116066349	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	-976.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	2.42	3.27	0.57	3.22	2.45	6.59	6.31	2.1	2.56	1.0	1.51	3.13
Merged-chr11-70458908-1	chr11	70458808	70459008	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	-525.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	7.67	5.28	3.99	0.8	2.05	11.6	1.33	1.77	2.56	3.51	2.01	4.07
Merged-chr5-77061614-1	chr5	77061514	77061714	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027970)	TTS (NM_027970)	33653.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	1.21	2.01	2.28	3.22	4.91	5.96	5.31	4.63	5.9	6.03	6.53	3.13
Merged-chr10-95678378-1	chr10	95678278	95678478	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-114232.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	5.65	4.53	5.7	5.23	4.91	4.7	2.99	6.0	5.11	8.03	1.0	5.95
Merged-chr3-59201589-1	chr3	59201489	59201689	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-6485.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	4.85	2.01	10.27	4.83	2.86	5.96	3.32	3.28	4.33	2.01	1.51	4.39
Merged-chr9-31400537-1	chr9	31400437	31400637	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359654, intron 10 of 25)	intron (NM_001359654, intron 10 of 25)	14345.0	NM_001359654	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	1.62	1.01	3.42	4.83	4.09	1.88	4.98	4.29	4.33	1.0	5.02	1.57
Merged-chr7-101599508-1	chr7	101599408	101599608	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1ME|LINE|L1	-18347.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.65	6.79	7.99	2.01	9.41	8.15	3.32	3.98	10.03	8.54	5.53	0.0
Merged-chr6-115524634-1	chr6	115524534	115524734	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	2.42	3.27	5.7	5.63	5.32	7.84	3.32	4.04	2.56	2.01	2.51	1.88
Merged-chr1-133046791-1	chr1	133046691	133046891	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099276, intron 1 of 32)	intron (NM_001099276, intron 1 of 32)	779.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	6.06	7.55	2.28	2.01	4.91	4.08	4.98	4.35	4.52	4.02	6.03	3.76
Merged-chr2-150834066-1	chr2	150833966	150834166	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8504.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.42	0.75	0.0	0.8	6.55	0.0	1.33	4.23	3.15	4.02	0.5	0.94
Merged-chr11-115184147-1	chr11	115184047	115184247	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025400, intron 4 of 6)	B4|SINE|B4	3169.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.0	1.01	5.7	0.8	0.0	1.88	1.99	0.0	2.36	0.5	1.51	5.01
Merged-chr10-69308089-1	chr10	69307989	69308189	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	44823.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	2.02	2.01	1.14	3.22	4.09	5.33	4.65	4.18	3.54	2.01	6.53	5.01
Merged-chr1-55210281-1	chr1	55210181	55210381	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356287, intron 1 of 7)	intron (NM_001356287, intron 1 of 7)	16501.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	4.04	3.02	1.14	1.61	6.95	5.33	3.32	4.12	2.95	5.02	3.01	3.45
Merged-chr16-44780846-1	chr16	44780746	44780946	+	565.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	15110.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	1.62	2.52	5.7	0.8	5.32	7.53	4.32	3.22	4.92	8.54	6.03	6.58
Merged-chr13-54758158-2	chr13	54758066	54758266	+	565.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033610)	TTS (NM_033610)	-8292.0	NM_012014	26913.0	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	4.44	6.79	2.28	3.22	7.36	6.59	3.65	7.88	9.24	8.54	9.55	7.52
Merged-chr17-73301495-2	chr17	73301396	73301596	+	565.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	97800.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	6.86	7.55	6.28	4.02	6.14	4.08	4.65	5.02	4.72	7.53	5.02	3.76
Merged-chr7-45019106-2	chr7	45019006	45019206	+	565.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	-364.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	7.67	6.29	5.7	2.82	8.18	1.57	3.32	3.62	7.08	5.52	4.52	6.89
Merged-chr3-144203526-2	chr3	144203422	144203622	+	565.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	-1126.0	NM_001161769	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	10.09	7.8	10.27	2.82	6.14	4.39	6.98	4.18	10.82	8.54	10.05	6.58
Merged-chr4-85801994-1	chr4	85801894	85802094	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-251921.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	1.62	2.77	4.56	1.61	7.77	1.88	2.99	4.88	4.33	3.51	19.09	7.52
Merged-chr6-137397520-1	chr6	137397420	137397620	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-13201.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.83	1.26	5.7	2.41	3.68	5.33	5.65	5.52	3.93	2.01	15.58	0.63
Merged-chr3-145928340-1	chr3	145928240	145928440	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	MIRb|SINE|MIR	4078.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	3.23	0.75	3.42	6.03	3.27	2.2	3.99	3.11	0.98	0.5	2.01	3.13
Merged-chr15-77798828-1	chr15	77798728	77798928	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41818.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	3.63	8.3	1.14	0.0	4.5	6.59	4.32	4.82	4.92	4.52	2.01	3.76
Merged-chr1-157416001-1	chr1	157415901	157416101	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-3406.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	4.04	3.27	2.85	2.82	6.95	1.25	3.65	2.97	4.52	1.51	2.01	1.88
Merged-chr2-52942995-1	chr2	52942895	52943095	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85127.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	1.62	2.52	5.7	0.4	3.68	4.08	4.65	3.67	6.29	8.03	10.05	2.82
Merged-chr17-71186859-1	chr17	71186759	71186959	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	PB1D7|SINE|Alu	2881.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.63	4.53	4.56	0.0	4.91	4.7	5.31	4.43	4.52	4.02	4.02	3.13
Merged-chr10-21425936-1	chr10	21425836	21426036	+	565.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48636.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.0	3.02	0.0	4.02	0.0	1.25	0.0	1.68	12.98	15.57	6.53	8.14
Merged-chr2-172477028-1	chr2	172476928	172477128	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4474.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.0	0.5	0.57	0.4	2.05	6.27	5.65	3.53	2.36	1.51	1.51	1.25
Merged-chr15-59622778-1	chr15	59622678	59622878	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25876.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.06	4.28	3.99	3.22	5.32	6.27	2.99	4.21	7.67	4.02	6.03	3.45
Merged-chr13-37600979-1	chr13	37600879	37601079	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-225059.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.21	1.01	0.57	0.4	6.55	4.39	4.65	4.82	3.34	3.01	7.54	1.25
Merged-chr17-4840302-2	chr17	4840215	4840415	+	565.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-154759.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	8.48	3.02	6.85	9.25	5.73	4.7	3.99	5.61	8.26	5.02	11.05	4.39
Merged-chr13-59856557-2	chr13	59856469	59856669	+	565.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33422.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	6.46	6.54	7.99	3.22	9.41	10.66	5.65	5.72	10.62	5.52	5.53	5.33
Merged-chr7-127744481-1	chr7	127744381	127744581	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2294.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	2.42	8.3	3.42	4.02	5.73	4.7	1.66	3.17	2.95	5.02	4.52	5.33
Merged-chr13-112767650-1	chr13	112767550	112767750	+	565.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33127.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	2.83	1.01	3.99	0.8	0.0	0.0	1.99	2.38	8.06	8.03	13.57	4.7
Merged-chr7-33982498-1	chr7	33982398	33982598	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	31444.0	NM_001276475	233099.0	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	8.08	6.54	2.28	7.24	8.59	10.03	4.32	3.06	5.31	6.03	9.04	0.63
Merged-chr13-112397679-2	chr13	112397565	112397765	+	565.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66405.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.85	5.28	7.99	12.07	6.95	2.51	0.66	4.51	11.41	8.54	10.05	5.33
Merged-chr5-137074296-2	chr5	137074177	137074377	+	565.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2005.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	8.88	5.79	1.14	6.84	7.77	5.02	2.33	5.78	6.69	18.58	10.05	8.46
Merged-chr7-126625996-2	chr7	126625891	126626091	+	565.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-521.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	5.25	9.06	4.56	0.8	8.18	12.23	2.66	4.77	7.28	8.03	9.55	10.02
Merged-chr4-3081308-1	chr4	3081208	3081408	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-90775.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	7.67	3.52	8.56	13.27	1.64	4.39	3.99	2.33	3.34	1.51	4.52	2.82
Merged-chr2-16357670-1	chr2	16357570	16357770	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	1366.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.81	1.76	0.0	0.8	2.45	2.51	4.32	3.17	2.56	2.01	4.02	2.19
Merged-chr14-105198684-1	chr14	105198584	105198784	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21357.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	2.83	7.8	0.0	4.02	7.36	10.66	5.65	5.58	3.93	4.52	3.52	6.89
Merged-chr12-51673386-1	chr12	51673286	51673486	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	RMER19B|LTR|ERVK	-17580.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	4.28	4.56	4.02	0.0	1.88	4.65	4.68	5.11	0.0	5.02	5.33
Merged-chr8-46781300-1	chr8	46781200	46781400	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	41555.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.65	6.04	1.71	4.02	7.36	3.76	2.33	5.75	8.65	4.52	4.52	3.13
Merged-chr13-24920557-1	chr13	24920457	24920657	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172532, intron 4 of 9)	intron (NM_172532, intron 4 of 9)	14957.0	NR_045182	73326.0	Mm.458692	NR_045182	ENSMUSG00000086796	4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	4.85	2.01	6.28	3.22	2.45	3.14	2.66	5.36	5.7	6.03	1.51	0.94
Merged-chr4-83384266-1	chr4	83384166	83384366	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045450, intron 2 of 2)	intron (NR_045450, intron 2 of 2)	6402.0	NR_045450	790913.0	Mm.406752	NR_045450	ENSMUSG00000086321	Gm11413	-	predicted gene 11413	ncRNA	1.62	2.52	1.14	0.8	6.14	1.88	3.99	7.09	5.7	3.01	2.01	5.01
Merged-chr13-52535750-1	chr13	52535650	52535850	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4914.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	2.02	6.04	7.42	2.82	0.0	4.39	3.65	2.07	12.98	11.05	5.02	5.33
Merged-chr19-45015665-1	chr19	45015565	45015765	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145503, intron 1 of 4)	CpG	455.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	4.04	7.04	6.28	6.44	10.64	5.33	4.65	3.48	4.33	3.51	6.03	2.19
Merged-chr15-3994944-1	chr15	3994844	3995044	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	808.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	3.23	2.52	1.71	0.0	3.68	5.96	0.66	4.71	0.79	0.5	7.03	1.25
Merged-chr13-20185684-1	chr13	20185584	20185784	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	95177.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.23	3.77	2.28	2.82	7.36	7.53	5.65	1.37	6.1	8.54	8.54	10.34
Merged-chr3-95494019-1	chr3	95493919	95494119	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037737, intron 20 of 21)	B4A|SINE|B4	-5191.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	2.42	1.26	1.14	1.61	8.59	8.15	1.66	3.0	6.49	9.04	9.55	3.13
Merged-chr19-31756221-1	chr19	31756121	31756321	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	8812.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	9.29	4.02	2.28	3.22	9.82	5.02	2.33	5.83	3.15	4.52	1.0	8.14
Merged-chr6-115316012-1	chr6	115315912	115316112	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-44939.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	1.21	2.77	3.99	0.0	7.36	3.14	1.99	4.35	1.97	6.03	6.53	3.76
Merged-chr5-120522871-1	chr5	120522771	120522971	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	11679.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	6.06	1.26	1.14	2.01	1.64	7.21	2.33	2.89	7.08	5.52	9.55	3.76
Merged-chr10-115184908-1	chr10	115184808	115185008	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_173391, exon 1 of 11)	5' UTR (NM_173391, exon 1 of 11)	114.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	0.81	2.01	4.56	4.83	5.32	4.39	4.32	5.1	4.13	2.01	8.54	2.82
Merged-chr15-73506430-2	chr15	73506333	73506533	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6127.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	4.44	5.28	10.27	4.02	1.23	5.64	2.66	4.26	5.11	2.01	4.52	3.76
Merged-chr19-34539613-1	chr19	34539513	34539713	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11081.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.81	2.26	4.56	2.41	4.5	5.64	1.66	5.27	11.41	3.01	7.03	2.19
Merged-chr11-52283392-2	chr11	52283311	52283511	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313981)	promoter-TSS (NM_001313981)	-397.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	10.5	7.55	7.99	6.44	7.36	4.39	1.99	4.65	10.82	10.04	8.04	6.27
Merged-chr10-80939413-1	chr10	80939313	80939513	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9322.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.04	7.04	3.99	3.22	13.09	6.27	2.99	2.16	4.72	11.05	8.04	3.45
Merged-chr2-112775011-1	chr2	112774911	112775111	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001319156, intron 47 of 103)	intron (NM_001319156, intron 47 of 103)	156594.0	NM_001355631	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	1.21	2.26	2.28	2.41	0.0	0.94	5.31	1.12	0.0	3.51	2.01	1.57
Merged-chr18-10726923-1	chr18	10726823	10727023	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	1298.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.81	4.28	4.56	4.02	1.23	4.7	10.63	5.24	5.31	9.54	8.54	4.7
Merged-chr4-33291067-1	chr4	33290967	33291167	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-19244.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.86	6.29	1.71	6.44	2.86	3.76	5.31	3.36	1.97	8.03	12.06	5.33
Merged-chr19-47259766-2	chr19	47259664	47259864	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164717)	TTS (NM_001164717)	13825.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	7.67	3.27	1.14	1.61	4.91	5.33	1.33	3.64	10.03	11.05	9.04	7.21
Merged-chr10-111171410-1	chr10	111171310	111171510	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	6608.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.42	5.53	6.28	4.42	1.64	5.33	1.33	2.36	6.1	2.51	4.02	2.82
Merged-chr13-54593829-1	chr13	54593729	54593929	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347512, exon 6 of 6)	3' UTR (NM_001347512, exon 6 of 6)	3598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	1.62	5.28	2.28	4.02	4.91	11.6	4.98	6.67	10.03	1.0	9.04	2.19
Merged-chr13-66300138-1	chr13	66300038	66300238	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	140980.0	NM_183119	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	3.23	5.03	6.28	13.27	4.91	0.63	2.33	2.61	0.39	1.0	0.0	0.31
Merged-chr9-106303204-1	chr9	106303104	106303304	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	22143.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.21	9.56	9.13	0.8	1.64	5.96	3.32	0.7	7.28	2.51	10.55	2.82
Merged-chr7-116307013-1	chr7	116306913	116307113	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1363.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	2.83	1.01	2.85	1.21	3.68	3.76	3.99	4.46	2.95	4.02	3.01	2.82
Merged-chr19-60756501-1	chr19	60756401	60756601	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	514.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	3.63	0.5	1.14	4.02	8.59	2.2	5.98	4.29	4.72	2.51	3.01	5.33
Merged-chr7-79595069-1	chr7	79594969	79595169	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019799, intron 9 of 10)	intron (NM_019799, intron 9 of 10)	22588.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	3.23	9.31	4.56	0.0	6.55	5.02	0.0	5.41	12.39	10.54	5.02	2.51
Merged-chr14-55085144-1	chr14	55085044	55085244	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	6904.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	4.85	3.77	1.14	2.41	2.86	1.57	2.33	2.27	7.87	2.01	3.52	6.89
Merged-chr18-79294976-1	chr18	79294876	79295076	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185585.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.23	2.52	1.14	0.0	6.95	6.27	4.32	5.86	4.33	1.51	4.02	0.94
Merged-chrX-106145088-1	chrX	106144988	106145188	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 1 of 2)	L1_Mus1|LINE|L1	1813.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	7.27	3.02	4.56	0.8	8.18	7.21	1.66	0.0	1.97	3.51	2.51	3.76
Merged-chr10-81628404-1	chr10	81628304	81628504	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-136.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	1.62	1.51	0.0	0.8	5.73	1.57	1.99	1.99	3.15	3.01	3.52	1.57
Merged-chrX-94152866-1	chrX	94152766	94152966	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	-29099.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.4	5.03	0.0	0.8	4.91	3.14	5.98	4.63	0.98	3.01	0.5	0.0
Merged-chr8-83609720-1	chr8	83609620	83609820	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	1172.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	6.86	9.56	2.28	4.02	6.14	2.82	0.66	2.69	4.33	4.02	3.01	1.88
Merged-chr17-4778373-1	chr17	4778273	4778473	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143393.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	2.42	5.79	17.68	5.63	4.09	2.2	3.65	7.18	10.42	8.54	18.59	2.82
Merged-chr3-27937313-1	chr3	27937213	27937413	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1367.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.42	1.01	0.0	4.02	3.27	5.02	0.66	5.5	0.0	5.02	1.51	0.0
Merged-chr10-83149828-1	chr10	83149728	83149928	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	164331.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	3.63	0.0	1.14	2.41	0.0	6.27	3.99	4.37	0.79	2.01	0.5	1.25
Merged-chr3-144242262-1	chr3	144242162	144242362	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37007.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	1.62	2.01	2.28	3.22	4.09	5.64	8.97	4.63	5.9	6.03	9.55	9.4
Merged-chr10-67105182-1	chr10	67105082	67105282	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8194.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	2.42	4.02	0.0	4.02	6.95	4.39	1.33	5.21	5.51	3.01	4.02	2.19
Merged-chr1-173599226-1	chr1	173599126	173599326	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177349)	promoter-TSS (NM_001177349)	48.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0.0	0.75	0.0	1.61	0.0	0.63	1.99	0.67	9.44	3.51	10.55	4.39
Merged-chr7-7300100-1	chr7	7300000	7300200	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011334)	promoter-TSS (NM_011334)	-543.0	NM_011334	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0.4	5.03	2.28	0.4	4.09	1.88	3.99	4.49	7.47	4.02	2.51	2.82
Merged-chr7-44124046-1	chr7	44123946	44124146	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	11373.0	NM_010114	13646.0	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	8.08	5.79	2.28	8.85	6.95	4.08	8.97	5.55	3.15	5.02	2.01	2.19
Merged-chr12-34299696-1	chr12	34299596	34299796	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 16 of 27)	ORR1D2|LTR|ERVL-MaLR	229193.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.62	1.01	0.57	4.83	4.91	4.08	1.66	6.08	0.79	2.51	3.01	1.25
Merged-chr6-72146550-1	chr6	72146450	72146650	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-23353.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.44	3.52	5.7	2.41	4.91	1.25	4.65	4.23	3.74	5.52	7.03	7.52
Merged-chr7-108944113-1	chr7	108944013	108944213	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9698.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	2.83	3.52	5.7	1.21	5.73	2.82	0.33	7.04	2.75	2.51	2.51	2.19
Merged-chr13-91509192-1	chr13	91509092	91509292	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48095.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	2.83	5.03	2.28	8.85	6.14	3.14	0.66	4.88	3.15	1.0	0.5	1.25
Merged-chr2-157099680-1	chr2	157099580	157099780	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018851, intron 15 of 15)	intron (NM_018851, intron 15 of 15)	12625.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.81	1.01	5.13	1.61	6.55	1.25	1.33	5.05	2.16	7.03	3.01	2.82
Merged-chr19-11095982-1	chr19	11095882	11096082	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027058)	TTS (NM_027058)	-14879.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	4.04	4.78	2.85	5.23	5.73	8.15	0.0	2.94	2.75	4.52	0.5	5.33
Merged-chr4-95270583-1	chr4	95270483	95270683	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-218361.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	1.62	4.28	1.14	4.42	4.09	4.39	1.0	4.74	4.92	6.53	3.52	2.19
Merged-chr7-81371913-1	chr7	81371813	81372013	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357107, intron 1 of 9)	intron (NM_001357107, intron 1 of 9)	562.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.81	2.26	3.42	0.0	0.0	4.39	1.99	4.21	2.95	7.53	3.01	5.33
Merged-chr10-66742006-1	chr10	66741906	66742106	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178378.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	6.06	4.28	0.0	0.0	3.27	6.59	2.66	4.12	8.46	8.54	9.55	6.58
Merged-chr10-78493682-1	chr10	78493582	78493782	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28734.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	2.83	3.02	5.7	3.22	5.73	4.7	3.65	5.33	4.72	3.01	3.52	4.7
Merged-chr11-100478118-1	chr11	100478018	100478218	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_130343)	TTS (NR_130343)	362.0	NR_130343	102465671.0		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	2.83	2.52	0.0	6.44	4.91	0.94	1.33	5.94	3.74	5.52	8.54	2.82
Merged-chr19-55738321-1	chr19	55738221	55738421	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3489.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.81	2.52	2.85	3.22	3.27	4.39	1.66	5.07	1.77	2.51	4.02	1.25
Merged-chr1-10268563-1	chr1	10268463	10268663	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35893.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	2.83	3.52	3.99	0.8	3.68	5.64	4.65	5.72	6.29	5.52	5.53	2.51
Merged-chr18-67450090-1	chr18	67449990	67450190	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-954.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	1.62	2.01	1.14	3.22	1.64	4.08	2.33	3.9	4.13	7.03	7.03	9.08
Merged-chr6-54080476-1	chr6	54080376	54080576	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	40544.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	1.62	3.02	1.14	4.83	11.45	1.88	5.98	3.76	2.75	4.52	9.04	1.88
Merged-chr18-73548817-1	chr18	73548717	73548917	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-23888.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	2.02	1.01	3.42	0.0	3.27	5.64	2.99	3.95	4.33	2.01	5.02	3.13
Merged-chr4-133197910-1	chr4	133197810	133198010	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	2255.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	6.06	0.5	0.0	1.61	6.14	0.0	3.32	1.37	1.57	3.51	5.02	3.76
Merged-chr7-120201827-1	chr7	120201727	120201927	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016669, exon 1 of 8)	exon (NM_016669, exon 1 of 8)	161.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.81	0.75	1.14	1.61	5.32	2.2	2.66	3.7	0.98	2.51	4.02	0.94
Merged-chr14-63102308-1	chr14	63102208	63102408	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20154.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.81	1.26	0.57	1.61	3.27	1.25	4.98	2.19	7.08	1.0	8.54	6.27
Merged-chr7-116161606-1	chr7	116161506	116161706	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305189, intron 8 of 20)	intron (NM_001305189, intron 8 of 20)	27998.0	NM_001305190	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	3.23	1.51	7.99	0.0	2.45	5.96	3.99	4.57	4.72	3.51	4.02	3.45
Merged-chr15-25590838-1	chr15	25590738	25590938	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-31712.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.46	7.55	5.13	6.84	1.64	0.31	0.66	0.9	0.98	0.5	1.0	0.0
Merged-chr14-66231726-1	chr14	66231626	66231826	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	GA-rich|Low_complexity|Low_complexity	-17902.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.42	2.26	1.14	2.01	3.27	1.88	0.33	2.33	7.28	3.01	1.51	5.95
Merged-chr2-160673657-1	chr2	160673557	160673757	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009408, intron 3 of 20)	MTD|LTR|ERVL-MaLR	27760.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.23	4.53	13.69	5.63	8.59	5.02	4.98	6.42	5.11	9.04	8.04	12.84
Merged-chr11-54879052-1	chr11	54878952	54879152	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	12669.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	2.83	5.28	9.7	1.61	6.14	2.2	1.66	4.71	10.42	1.51	3.52	3.45
Merged-chr5-65888339-1	chr5	65888239	65888439	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	24770.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	2.42	2.52	4.56	1.61	4.5	5.02	3.32	6.84	0.2	1.0	0.5	2.51
Merged-chr10-128792193-1	chr10	128792093	128792293	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021412, intron 2 of 8)	B2_Mm2|SINE|B2	1238.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	3.63	5.03	0.57	7.24	9.82	3.14	4.32	2.8	7.67	11.05	9.04	2.19
Merged-chr9-57643381-1	chr9	57643281	57643481	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2272.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.4	1.51	2.28	2.41	0.0	3.45	2.33	3.17	1.97	2.01	0.5	2.51
Merged-chr6-129095406-2	chr6	129095294	129095494	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	5509.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	1.62	4.28	3.99	4.02	4.09	11.92	10.96	5.61	7.87	8.03	11.56	6.58
Merged-chr8-88649783-1	chr8	88649683	88649883	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	2436.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	1.62	3.52	2.85	3.22	2.05	5.96	1.33	2.41	6.29	1.51	1.51	1.88
Merged-chr11-115374312-1	chr11	115374212	115374412	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6556.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	3.63	4.53	8.56	2.41	2.05	6.27	5.65	4.54	1.77	5.02	4.02	2.19
Merged-chr13-119442304-1	chr13	119442204	119442404	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 4 of 10)	MTC|LTR|ERVL-MaLR	13402.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	1.76	1.14	3.62	8.18	3.14	4.65	3.42	4.92	7.03	4.02	3.76
Merged-chr1-127979065-1	chr1	127978965	127979165	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	110292.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	1.62	6.04	3.42	2.01	4.09	5.33	2.99	8.69	4.33	1.51	1.51	3.76
Merged-chr17-6055074-1	chr17	6054974	6055174	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360148, intron 10 of 15)	RLTR20C1_MM|LTR|ERVK	24665.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	9.29	7.55	1.14	10.46	5.73	5.02	5.31	3.76	3.93	4.02	4.52	4.07
Merged-chr4-137739344-1	chr4	137739244	137739444	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	14883.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	4.85	5.28	0.0	1.61	4.91	3.76	5.65	4.91	5.31	5.02	6.03	6.89
Merged-chr4-134188026-1	chr4	134187926	134188126	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-941.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	1.62	3.02	5.13	3.62	3.27	5.02	1.0	4.88	0.59	0.0	1.51	2.19
Merged-chr1-88697515-1	chr1	88697415	88697615	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177305)	TTS (NM_177305)	4676.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	1.62	4.02	0.0	2.41	2.05	6.9	4.98	0.76	1.57	2.51	0.0	2.82
Merged-chr1-65119629-1	chr1	65119529	65119729	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285881, intron 2 of 7)	intron (NM_001285881, intron 2 of 7)	3585.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.81	1.26	4.56	1.61	3.27	5.02	1.0	3.67	6.69	8.03	10.55	8.77
Merged-chr7-81204803-2	chr7	81204763	81204963	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8941.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.46	1.76	3.42	0.0	3.27	6.59	1.66	3.53	2.36	2.01	4.52	3.76
Merged-chr6-72132982-1	chr6	72132882	72133082	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-9785.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.42	3.52	0.0	1.61	4.09	17.25	4.98	4.74	11.01	4.02	8.04	1.57
Merged-chr11-62013688-1	chr11	62013588	62013788	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	56925.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	7.67	4.02	3.42	3.22	0.82	11.6	6.64	3.45	5.31	2.51	5.53	5.33
Merged-chr5-121970157-1	chr5	121970057	121970257	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	77668.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.04	2.01	0.0	3.62	4.5	1.88	5.31	4.51	0.59	1.51	1.0	0.63
Merged-chr7-121080153-1	chr7	121080053	121080253	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3285.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.5	2.28	0.0	5.32	1.25	2.66	5.44	8.65	4.02	2.01	2.82
Merged-chr15-96626960-1	chr15	96626860	96627060	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	15002.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	8.08	7.29	7.42	0.8	1.23	3.45	2.66	2.5	6.1	7.03	4.02	4.39
Merged-chr11-61613800-1	chr11	61613700	61613900	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34113.0	NM_001252189	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	7.67	4.78	15.97	9.65	4.91	15.37	4.65	1.43	10.03	7.03	9.04	5.64
Merged-chr13-42300799-1	chr13	42300699	42300899	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-677.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.04	1.76	2.85	3.62	2.05	0.63	4.65	4.37	5.11	0.5	1.51	4.07
Merged-chr9-98955248-1	chr9	98955148	98955348	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012020)	promoter-TSS (NM_012020)	62.0	NR_003248	768252.0	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	-	forkhead box L2, opposite strand	ncRNA	2.42	4.78	5.7	2.01	6.14	1.57	4.98	4.12	3.54	5.02	3.52	3.45
Merged-chr11-98412500-1	chr11	98412400	98412600	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	16.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	5.25	1.51	3.99	1.61	1.64	7.21	3.99	2.94	3.74	2.01	1.51	1.25
Merged-chr19-55747513-2	chr19	55747433	55747633	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	5723.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.63	7.55	5.7	3.62	4.09	6.59	1.99	3.73	12.59	6.03	8.54	0.63
Merged-chr13-38634521-1	chr13	38634421	38634621	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139063, intron 1 of 4)	intron (NM_139063, intron 1 of 4)	588.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	2.83	3.02	1.14	6.44	6.14	6.9	7.64	3.36	4.33	6.03	6.53	2.19
Merged-chr18-36713103-1	chr18	36713003	36713203	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	13712.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	3.23	3.02	1.14	3.22	2.86	1.25	3.65	1.91	9.24	10.04	8.04	7.83
Merged-chr5-146768953-2	chr5	146768858	146769058	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011669, exon 2 of 9)	exon (NM_011669, exon 2 of 9)	25998.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	1.62	2.52	3.42	3.22	2.86	6.27	2.33	4.18	7.87	12.55	9.55	6.58
Merged-chr12-75855296-2	chr12	75855198	75855398	+	564.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	36980.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	8.88	5.79	5.7	5.23	3.68	4.7	3.32	6.17	3.54	3.51	6.53	8.14
Merged-chr14-73241495-1	chr14	73241395	73241595	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	3604.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.44	5.03	4.56	3.62	8.59	6.27	6.64	3.59	4.13	4.02	3.01	3.13
Merged-chr11-120236597-1	chr11	120236497	120236697	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198423, intron 1 of 27)	CpG	3650.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	7.27	2.77	2.28	6.44	5.73	7.21	5.98	4.04	6.88	10.04	7.03	4.7
Merged-chr16-45970384-1	chr16	45970284	45970484	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	24778.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	3.23	2.52	3.42	3.22	6.55	11.92	1.99	4.32	8.65	5.52	9.04	4.7
Merged-chr17-84145578-2	chr17	84145456	84145656	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42391.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.86	2.77	3.99	6.44	6.95	5.64	7.31	4.29	9.83	4.52	6.03	7.21
Merged-chr5-142877499-2	chr5	142877385	142877585	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	17753.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	9.69	3.27	2.28	2.01	6.95	11.92	1.99	3.67	7.87	10.04	13.57	7.83
Merged-chr14-21621111-1	chr14	21621011	21621211	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 5 of 16)	intron (NM_017479, intron 5 of 16)	93465.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	11.31	2.77	4.56	1.61	8.18	5.02	3.99	4.01	4.13	2.51	10.55	4.07
Merged-chr16-16438684-1	chr16	16438584	16438784	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 11 of 16)	MRLTR33|LTR|ERVK	-79653.0	NM_001360009	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.81	2.52	2.28	8.45	12.68	6.59	5.98	4.49	3.54	1.0	6.53	4.39
Merged-chr1-105978825-1	chr1	105978725	105978925	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151625)	TTS (NR_151625)	11457.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	3.23	1.01	2.28	4.42	1.64	5.02	3.65	4.46	4.33	11.55	7.03	3.13
Merged-chr7-19279168-1	chr7	19279068	19279268	+	564.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	881.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	4.44	3.52	2.28	0.4	0.82	3.14	1.66	1.49	10.23	2.51	10.05	13.16
Merged-chr18-34512031-2	chr18	34511942	34512142	+	564.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-5219.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	7.67	2.26	15.4	10.86	8.18	2.82	6.98	17.64	1.18	1.51	2.01	0.0
Merged-chr17-83025468-2	chr17	83025380	83025580	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52745.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	2.83	6.04	6.85	6.84	8.59	1.25	6.64	4.93	6.88	2.51	6.53	6.58
Merged-chr2-131982796-2	chr2	131982739	131982939	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31802.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.81	3.02	1.14	1.61	3.27	4.7	2.66	2.83	4.72	5.52	7.03	0.31
Merged-chr17-34251820-3	chr17	34251706	34251906	+	564.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11421.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	7.27	6.79	4.56	3.22	5.73	5.02	0.66	5.3	7.87	7.03	11.56	9.08
Merged-chr13-54301886-2	chr13	54301787	54301987	+	564.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69462.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	1.62	4.53	13.12	1.61	11.86	3.14	9.97	4.07	8.46	13.05	10.55	10.65
Merged-chr2-118487229-2	chr2	118487139	118487339	+	564.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7543.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	2.83	0.75	3.42	5.63	4.91	4.7	2.33	3.2	6.49	4.52	8.54	5.64
Merged-chr7-97764745-1	chr7	97764645	97764845	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23796.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	8.08	2.01	1.14	1.61	1.64	3.76	2.33	7.09	5.51	1.51	5.02	4.39
Merged-chr10-42958335-1	chr10	42958235	42958435	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172938, exon 9 of 9)	3' UTR (NM_172938, exon 9 of 9)	32827.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	4.04	1.76	3.99	2.41	4.91	5.64	4.65	3.93	0.98	6.53	5.02	4.7
Merged-chr9-31221226-1	chr9	31221126	31221326	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-9378.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	2.83	4.53	0.57	2.01	6.14	4.7	1.99	0.95	4.52	2.51	3.52	6.89
Merged-chr5-143567942-1	chr5	143567842	143568042	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19236.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	2.83	1.01	0.0	6.03	3.27	0.63	5.98	2.38	3.74	2.01	2.01	1.57
Merged-chr4-58462407-1	chr4	58462307	58462507	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-21309.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	5.65	3.52	6.85	5.23	8.18	3.14	3.32	4.91	12.78	8.54	7.54	3.76
Merged-chr2-131950841-1	chr2	131950741	131950941	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001278520)	promoter-TSS (NM_001278520)	-20.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	4.44	7.29	13.69	7.24	0.41	7.84	1.99	1.57	9.83	4.02	2.01	6.27
Merged-chr2-101896018-1	chr2	101895918	101896118	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029635, intron 2 of 5)	LTR16E2|LTR|ERVL	9756.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	4.44	4.02	8.56	8.85	6.55	1.57	2.66	6.34	1.38	0.0	0.0	2.19
Merged-chr1-177179833-1	chr1	177179733	177179933	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	68934.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.04	0.0	1.71	4.83	3.68	4.39	3.32	3.59	7.67	7.03	6.03	8.46
Merged-chr15-41818936-1	chr15	41818836	41819036	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 8 of 17)	intron (NR_152565, intron 8 of 17)	-12022.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.46	2.01	6.85	1.61	10.23	6.9	1.66	4.4	5.51	6.53	6.53	3.45
Merged-chr17-47628990-1	chr17	47628890	47629090	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1700.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	6.06	6.54	4.56	4.42	4.09	7.84	6.98	5.21	13.57	12.05	14.57	8.77
Merged-chrX-85805160-1	chrX	85805060	85805260	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21501.0	NR_152196	100041562.0	Mm.448008	NR_152196		Gm14762	-	predicted gene 14762	ncRNA	0.0	3.52	3.42	2.41	3.27	0.0	4.65	6.22	3.93	2.51	5.02	4.39
Merged-chr1-138160501-1	chr1	138160401	138160601	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	Lx9|LINE|L1	14625.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.85	5.28	6.85	3.22	5.32	4.39	4.32	7.26	3.93	9.04	3.52	5.95
Merged-chr11-61193586-1	chr11	61193486	61193686	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15156.0	NM_007436	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	7.27	5.28	0.57	2.82	7.77	10.35	1.66	2.89	7.47	5.52	13.06	7.52
Merged-chr4-53028442-1	chr4	53028342	53028542	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16562.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	1.62	4.28	2.85	2.82	4.91	2.51	7.31	4.74	3.15	12.05	3.01	3.13
Merged-chr19-40708824-1	chr19	40708724	40708924	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	49054.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.23	4.53	3.42	0.8	2.86	5.64	4.32	3.03	3.54	1.0	5.53	2.19
Merged-chr15-96953493-1	chr15	96953393	96953593	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66866.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	4.04	4.02	1.14	2.01	3.27	6.59	2.99	3.22	2.36	0.0	1.0	0.0
Merged-chr14-31217843-1	chr14	31217743	31217943	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001025379)	promoter-TSS (NM_001025379)	-30.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	10.9	7.04	2.28	6.03	6.14	3.45	5.31	4.57	6.49	7.03	6.03	3.45
Merged-chr12-81915762-1	chr12	81915662	81915862	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 5 of 35)	intron (NM_018814, intron 5 of 35)	55732.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	3.63	4.28	7.99	2.41	4.91	9.41	4.98	5.07	6.1	7.03	8.04	6.58
Merged-chr2-68826430-1	chr2	68826330	68826530	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-35011.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	10.5	5.03	1.14	0.8	6.14	5.02	5.31	3.0	4.52	7.53	8.54	3.76
Merged-chr6-116181007-1	chr6	116180907	116181107	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	RLTR34D_MM|LTR|ERVK	12367.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	12.92	3.27	3.42	2.41	4.5	5.33	3.99	10.4	5.11	5.52	6.03	1.88
Merged-chr18-67770911-1	chr18	67770811	67771011	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3965.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.23	4.28	7.99	4.02	2.45	2.2	5.65	4.57	5.9	3.01	5.53	2.19
Merged-chr6-51466341-1	chr6	51466241	51466441	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_182650, exon 5 of 10)	exon (NM_182650, exon 5 of 10)	3553.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	8.08	4.02	6.28	2.01	6.55	4.39	4.65	4.35	9.24	4.02	0.5	3.45
Merged-chr11-60422273-1	chr11	60422173	60422373	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025757, intron 1 of 5)	intron (NM_025757, intron 1 of 5)	5128.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	8.88	7.29	0.0	9.65	0.0	1.25	3.32	1.09	4.72	6.03	2.51	2.51
Merged-chr17-30216887-1	chr17	30216787	30216987	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	179293.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.81	3.02	2.28	5.63	0.0	3.14	2.66	2.02	2.36	2.51	4.02	6.27
Merged-chr1-191176091-1	chr1	191175991	191176191	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	7242.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.06	9.06	7.99	4.83	2.05	4.08	1.99	3.0	3.34	9.54	3.01	2.51
Merged-chr13-54190164-1	chr13	54190064	54190264	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1965.0	NM_001010973	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	16.56	23.9	14.26	14.08	7.36	6.9	4.32	11.05	4.72	11.05	9.55	7.83
Merged-chr7-6357743-1	chr7	6357643	6357843	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-5565.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	3.23	3.52	5.13	1.21	4.5	8.78	3.99	2.69	7.87	3.01	11.56	6.89
Merged-chr17-15829371-1	chr17	15829271	15829471	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2785.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.02	6.04	4.56	0.8	4.5	4.08	4.65	4.01	6.29	0.5	7.03	5.01
Merged-chr7-100497098-1	chr7	100496998	100497198	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011671, exon 4 of 8)	exon (NM_011671, exon 4 of 8)	3740.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	3.63	3.02	3.42	2.41	3.27	2.51	5.31	4.01	7.67	0.5	2.01	1.88
Merged-chr7-68127494-1	chr7	68127394	68127594	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136739.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	1.62	0.0	0.0	0.4	2.45	2.82	4.98	6.31	5.11	1.0	4.52	0.94
Merged-chr9-27029455-1	chr9	27029355	27029555	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178113)	promoter-TSS (NM_178113)	639.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	1.62	3.77	3.42	3.62	5.73	9.09	7.64	5.13	13.57	9.04	7.03	6.89
Merged-chr5-122952373-1	chr5	122952273	122952473	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 6 of 22)	CpG	36726.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.23	3.77	3.42	5.63	8.59	4.08	1.33	6.42	4.92	8.03	5.53	5.33
Merged-chr3-89396508-1	chr3	89396408	89396608	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	2218.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	6.46	4.28	1.14	2.82	4.91	8.78	3.65	3.64	4.52	6.53	5.53	7.83
Merged-chr9-41059264-1	chr9	41059164	41059364	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20242.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.42	1.26	0.0	4.02	3.68	2.82	4.98	3.34	1.18	4.02	2.51	3.13
Merged-chr17-7396225-1	chr17	7396125	7396325	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10920.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.81	0.75	0.0	1.61	5.73	3.76	7.97	0.76	10.03	7.53	8.04	6.27
Merged-chr10-62542616-1	chr10	62542516	62542716	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15171.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	1.62	4.28	3.42	0.0	1.23	5.02	3.32	4.29	2.36	4.02	7.54	3.45
Merged-chr16-30512589-1	chr16	30512489	30512689	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37989.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	5.25	1.76	3.99	6.03	7.77	3.14	4.65	4.46	4.33	6.53	3.01	3.13
Merged-chr3-117311172-1	chr3	117311072	117311272	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	49704.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.0	1.51	2.28	2.41	1.64	1.88	3.99	4.57	0.39	0.0	2.01	1.57
Merged-chr12-70148195-1	chr12	70148095	70148295	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5976.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.4	3.02	4.56	2.41	7.77	1.88	1.33	4.21	2.16	1.51	4.02	3.45
Merged-chr4-3518051-1	chr4	3517951	3518151	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19039.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	9.29	1.51	5.13	2.01	5.73	8.78	6.98	2.5	6.69	1.51	3.52	3.76
Merged-chr2-166270185-1	chr2	166270085	166270285	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-3723.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	6.86	1.76	4.56	5.23	4.91	0.63	3.99	5.21	4.33	5.02	5.53	5.95
Merged-chr6-54659139-1	chr6	54659039	54659239	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-22485.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.44	7.55	7.99	4.42	10.64	6.9	13.62	0.76	1.97	5.02	9.55	6.89
Merged-chr2-34898048-1	chr2	34897948	34898148	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028716, intron 13 of 14)	intron (NM_028716, intron 13 of 14)	15928.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	5.65	1.76	5.7	0.8	7.77	5.02	4.65	5.27	6.29	8.54	4.52	0.0
Merged-chr19-17165135-1	chr19	17165035	17165235	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174370.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.02	4.02	0.0	5.63	4.5	3.76	3.99	3.98	6.1	1.0	4.02	0.63
Merged-chr2-25266475-1	chr2	25266375	25266575	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175286, intron 1 of 3)	intron (NM_175286, intron 1 of 3)	3877.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	5.65	2.77	11.98	1.21	1.23	6.9	0.33	5.27	1.97	5.52	13.06	0.94
Merged-chr1-84444852-1	chr1	84444752	84444952	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-160207.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.04	1.26	2.28	2.82	2.86	3.45	4.65	1.32	0.39	1.0	4.02	3.76
Merged-chr13-6690224-1	chr13	6690124	6690324	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-41453.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	2.02	3.27	2.28	1.21	6.14	2.82	4.32	4.37	4.92	2.51	2.01	4.39
Merged-chr2-165367180-1	chr2	165367080	165367280	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5061.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	9.69	3.02	1.71	5.63	6.95	3.45	1.0	6.31	6.49	7.53	7.54	4.7
Merged-chrX-37074723-1	chrX	37074623	37074823	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8310.0	NR_002900	104369.0	Mm.453531	NR_002900	ENSMUSG00000065642	Snora69	MBI-134|Rnu69	small nucleolar RNA, H/ACA box 69	snoRNA	2.42	3.77	5.7	0.8	5.32	1.88	3.32	3.87	1.97	14.06	8.54	1.25
Merged-chr4-133633075-1	chr4	133632975	133633175	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	CpG	354.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	4.85	6.79	0.57	8.04	9.0	3.76	4.65	4.15	5.51	2.51	6.53	4.7
Merged-chr3-14881196-1	chr3	14881096	14881296	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5073.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	3.63	5.28	1.14	0.8	4.09	7.21	1.99	3.31	5.7	9.54	7.54	2.19
Merged-chr2-166964983-1	chr2	166964883	166965083	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_111895)	promoter-TSS (NR_111895)	-266.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.85	4.02	18.25	7.24	2.45	4.39	0.66	5.89	9.05	8.03	4.02	5.95
Merged-chr6-117277081-1	chr6	117276981	117277181	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108546.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	4.85	0.5	5.7	0.8	5.32	2.82	6.64	4.51	2.95	1.0	11.56	2.51
Merged-chr16-64899239-1	chr16	64899139	64899339	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47238.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	5.25	3.27	1.14	9.65	6.95	3.45	3.65	5.02	5.51	6.03	6.53	6.58
Merged-chr14-34490134-2	chr14	34490029	34490229	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	12417.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	1.21	9.06	0.57	1.61	13.09	8.15	4.32	3.48	9.83	12.05	5.53	2.51
Merged-chr15-99474262-1	chr15	99474162	99474362	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	468.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	8.88	11.57	1.71	3.62	6.14	9.41	4.32	2.83	4.33	6.03	5.02	4.39
Merged-chr7-110631291-1	chr7	110631191	110631391	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3634.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	4.78	3.42	0.0	7.36	3.45	3.65	5.24	1.57	1.51	5.02	0.63
Merged-chr14-34615307-1	chr14	34615207	34615407	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15165.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	3.63	4.02	1.71	0.8	7.36	1.25	2.66	5.27	3.54	3.51	5.02	3.45
Merged-chr17-87306898-1	chr17	87306798	87306998	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	24012.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.86	9.56	8.56	6.03	5.73	4.7	3.99	5.07	4.72	6.53	7.03	3.13
Merged-chr5-29893994-1	chr5	29893894	29894094	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119120.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.81	5.03	9.7	2.41	2.45	0.63	0.66	1.74	7.08	7.03	9.55	4.07
Merged-chr19-61018066-1	chr19	61017966	61018166	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	MTE2b|LTR|ERVL-MaLR	122774.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.04	2.01	1.14	3.62	4.91	5.96	1.33	4.6	3.74	8.03	2.01	2.19
Merged-chr7-142572108-1	chr7	142572008	142572208	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	5039.0	NR_030416	735280.0		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	7.27	6.54	2.28	6.03	1.23	3.14	2.99	6.22	4.33	5.52	8.04	6.27
Merged-chr12-69457281-1	chr12	69457181	69457381	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18269.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	2.83	4.78	2.28	0.8	7.36	6.9	7.97	0.48	1.57	5.02	2.01	2.51
Merged-chr6-114840074-1	chr6	114839974	114840174	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	81747.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.25	1.76	9.13	0.0	2.05	5.02	2.66	4.29	1.97	4.52	2.01	3.13
Merged-chr7-27167903-1	chr7	27167803	27168003	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029391)	TTS (NM_029391)	-1101.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	1.21	2.26	0.57	2.41	2.05	5.33	1.33	1.88	9.24	8.03	1.0	5.95
Merged-chr19-45037056-1	chr19	45036956	45037156	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001195265, exon 7 of 16)	exon (NM_001195265, exon 7 of 16)	8716.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	6.86	4.78	1.71	3.22	4.5	4.7	6.31	4.65	4.72	4.02	14.07	4.39
Merged-chr13-61774088-1	chr13	61773988	61774188	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028430, intron 1 of 3)	intron (NR_028430, intron 1 of 3)	2508.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	10.82	1.51	8.04	5.01
Merged-chr16-16557922-1	chr16	16557822	16558022	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2297.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.4	3.52	0.0	5.23	3.27	5.33	1.99	4.79	0.2	1.51	1.0	0.94
Merged-chr2-90490886-1	chr2	90490786	90490986	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11712.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.81	5.53	5.7	7.24	2.86	4.08	4.32	3.06	11.8	13.56	11.05	6.27
Merged-chr1-186704427-1	chr1	186704327	186704527	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329107, intron 1 of 7)	CpG	1562.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	2.83	4.78	5.13	4.83	8.59	1.88	6.98	3.11	0.98	6.03	5.02	5.64
Merged-chr14-31665093-1	chr14	31664993	31665193	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025295, intron 2 of 3)	intron (NM_025295, intron 2 of 3)	24036.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.23	8.8	5.13	2.41	3.27	11.29	8.3	2.1	8.46	6.53	4.52	4.07
Merged-chr7-97977582-1	chr7	97977482	97977682	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177696, intron 10 of 17)	intron (NM_177696, intron 10 of 17)	57624.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	4.04	1.76	1.14	2.82	3.27	6.27	1.33	4.15	3.74	5.02	12.06	6.27
Merged-chr10-24931643-1	chr10	24931543	24931743	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4173.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	1.62	3.77	4.56	6.44	6.14	4.39	7.31	3.64	7.08	12.55	6.53	3.45
Merged-chr3-69193270-1	chr3	69193170	69193370	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29149.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	7.67	5.03	11.41	5.63	4.5	0.63	1.99	4.35	7.47	6.03	7.54	2.51
Merged-chrX-153359666-1	chrX	153359566	153359766	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357183)	promoter-TSS (NM_001357183)	53.0	NM_001357183	245671.0	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.4	1.01	6.85	0.8	4.09	5.02	4.65	3.36	4.52	2.51	1.0	0.31
Merged-chr5-134613838-1	chr5	134613738	134613938	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	1187.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	5.65	3.02	1.14	3.62	2.86	2.2	3.99	3.67	4.33	1.51	5.53	4.39
Merged-chr1-62697121-2	chr1	62697008	62697208	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6209.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	7.27	7.8	10.84	8.45	4.91	4.39	1.99	7.65	8.06	7.53	5.02	3.13
Merged-chr13-45089259-1	chr13	45089159	45089359	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87163.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.65	9.06	2.28	4.83	5.73	8.15	4.32	3.7	7.67	14.56	9.55	8.14
Merged-chr6-106797594-1	chr6	106797494	106797694	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175357, intron 1 of 10)	MER20|DNA|hAT-Charlie	2493.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	3.23	4.78	3.42	0.0	4.09	10.98	8.3	2.44	8.46	4.52	4.02	0.31
Merged-chr1-60746356-1	chr1	60746256	60746456	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-32.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	1.21	0.75	0.0	3.22	3.68	2.51	5.65	6.28	3.93	3.51	3.52	1.25
Merged-chr4-150965330-1	chr4	150965230	150965430	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-31767.0	NM_011910	24111.0	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	6.86	6.04	0.57	2.41	5.32	3.76	1.0	2.72	8.65	9.04	4.52	9.71
Merged-chr9-21100592-1	chr9	21100492	21100692	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8584.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	2.83	6.04	0.0	1.21	6.14	3.76	0.33	3.67	3.74	2.51	2.01	0.63
Merged-chr2-173274898-1	chr2	173274798	173274998	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	1635.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.81	1.01	2.28	1.61	2.05	1.25	4.65	4.29	4.13	2.01	0.5	1.57
Merged-chr8-124617672-1	chr8	124617572	124617772	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023709, intron 19 of 19)	intron (NM_023709, intron 19 of 19)	41561.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	6.06	0.75	1.14	0.4	1.23	1.88	5.31	5.83	2.16	3.51	3.01	4.39
Merged-chr8-3309690-1	chr8	3309590	3309790	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-30073.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.44	2.26	9.7	7.64	2.45	3.45	8.97	2.69	8.85	3.01	3.52	3.13
Merged-chr2-160357356-1	chr2	160357256	160357456	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9709.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	10.9	6.29	1.71	3.22	10.23	15.99	1.0	1.93	5.31	4.52	1.0	2.19
Merged-chr2-177398317-1	chr2	177398217	177398417	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66425.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	6.46	5.53	4.56	6.44	4.5	6.9	4.65	1.71	10.82	6.53	2.51	3.76
Merged-chr15-27706817-1	chr15	27706717	27706917	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25275.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.81	1.01	1.14	0.0	0.82	4.39	2.66	5.69	1.77	2.51	1.51	2.19
Merged-chr17-25860677-1	chr17	25860577	25860777	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163766, exon 3 of 41)	exon (NM_001163766, exon 3 of 41)	838.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	4.85	5.53	7.99	4.02	4.09	4.08	1.99	4.18	5.51	3.01	8.04	5.95
Merged-chr19-21280021-1	chr19	21279921	21280121	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009551, intron 5 of 5)	intron (NM_009551, intron 5 of 5)	7743.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.63	3.77	1.71	1.21	5.32	9.41	4.65	2.36	3.93	3.51	4.52	2.82
Merged-chr11-115291128-1	chr11	115291028	115291228	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178035, intron 2 of 5)	intron (NM_178035, intron 2 of 5)	6418.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	2.42	1.01	9.13	4.42	6.55	1.25	3.99	6.93	4.92	7.03	8.54	2.82
Merged-chr12-95692186-1	chr12	95692086	95692286	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_201518)	promoter-TSS (NM_201518)	-40.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.81	1.26	2.28	0.4	3.27	2.51	3.99	3.73	2.56	2.51	1.51	5.33
Merged-chr4-155891307-1	chr4	155891207	155891407	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	455.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	8.88	2.52	7.42	8.04	5.73	4.39	2.99	6.81	5.11	6.03	10.05	8.14
Merged-chr9-37590505-1	chr9	37590405	37590605	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23215.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	5.65	4.02	0.0	4.83	2.45	0.94	3.32	5.47	5.7	2.01	5.02	0.94
Merged-chrX-56565338-1	chrX	56565238	56565438	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-15732.0	NM_001033372	270599.0	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	5.65	5.03	2.28	0.8	8.59	8.78	1.66	1.43	5.7	4.02	6.03	2.51
Merged-chr7-19268577-1	chr7	19268477	19268677	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	3277.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	1.21	6.54	18.25	0.0	0.82	3.76	1.66	0.87	7.47	1.0	6.03	1.88
Merged-chr14-55177489-2	chr14	55177373	55177573	+	563.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44534.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	8.08	4.02	3.42	4.83	3.27	5.33	3.99	5.19	7.87	10.04	10.05	7.21
Merged-chr1-55736584-2	chr1	55736470	55736670	+	563.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-194671.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	8.08	5.03	3.42	0.8	6.55	6.59	2.33	6.53	8.65	3.01	11.05	3.45
Merged-chr2-73458021-2	chr2	73457924	73458124	+	563.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	MLT1K|LTR|ERVL-MaLR	-4135.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.44	7.8	8.56	5.63	5.32	3.45	2.66	10.99	8.46	1.0	12.06	7.21
Merged-chr16-31528799-1	chr16	31528699	31528899	+	563.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-89334.0	NM_001357871	224098.0	Mm.125439	NM_001357870		Gm536	Gm1777	predicted gene 536	protein-coding	10.5	7.29	6.85	7.64	1.23	1.25	2.66	2.55	0.98	1.0	0.0	1.88
Merged-chr2-181523000-1	chr2	181522900	181523100	+	563.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	B2_Mm2|SINE|B2	2515.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	1.62	2.52	0.0	0.8	6.14	5.02	2.66	1.37	6.49	8.54	12.06	7.83
Merged-chrX-71086144-1	chrX	71086044	71086244	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	Lx8|LINE|L1	35888.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	4.04	3.77	7.42	11.26	6.14	5.33	7.31	10.99	4.52	5.02	12.06	5.33
Merged-chr11-114988292-1	chr11	114988192	114988392	+	563.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145437, intron 1 of 3)	B2_Mm2|SINE|B2	1594.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.0	0.0	0.0	0.0	9.82	1.88	2.33	2.89	4.72	8.54	10.55	7.52
Merged-chr3-85518617-1	chr3	85518517	85518717	+	563.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	51240.0	NR_130326	100316670.0		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA	5.25	7.8	7.99	2.82	2.45	1.88	3.65	0.45	3.74	0.5	1.51	2.19
Merged-chr7-35092662-1	chr7	35092562	35092762	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-26631.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.23	1.26	3.42	2.01	4.91	5.02	1.99	3.62	1.97	3.01	2.51	2.19
Merged-chr19-55800810-1	chr19	55800710	55800910	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	59000.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.27	7.04	5.13	2.01	6.14	9.09	3.99	3.7	3.74	7.03	1.0	2.82
Merged-chr7-30593399-1	chr7	30593299	30593499	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021397)	promoter-TSS (NM_021397)	-457.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	4.85	5.79	1.71	3.62	3.27	4.7	3.99	4.85	4.13	5.52	11.56	3.45
Merged-chr2-50741529-1	chr2	50741429	50741629	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-168155.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	6.14	5.33	4.32	9.14	2.56	5.02	6.53	5.95
Merged-chr14-67760701-1	chr14	67760601	67760801	+	563.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 48 of 51)	intron (NM_177780, intron 48 of 51)	15520.0	NR_133010	14714.0	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	1.21	1.76	4.56	5.23	4.09	2.2	2.99	1.09	7.87	6.03	9.04	7.52
Merged-chr5-105345242-1	chr5	105345142	105345342	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	1230.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	7.27	3.52	7.42	4.83	2.45	6.27	3.32	3.9	4.72	5.02	10.05	2.51
Merged-chr13-120321029-1	chr13	120320929	120321129	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	4167.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	1.62	3.02	3.42	1.61	3.27	6.27	5.98	4.01	2.56	5.52	5.02	3.76
Merged-chr1-85933397-2	chr1	85933288	85933488	+	563.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR48B|LTR|ERV1	4905.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	3.63	2.77	1.71	0.0	6.55	6.9	4.65	3.56	9.24	7.03	13.06	3.13
Merged-chr4-149339948-1	chr4	149339848	149340048	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	5309.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	3.23	3.27	0.57	2.01	5.32	4.7	1.99	2.47	3.15	9.54	0.5	3.13
Merged-chr9-111054574-1	chr9	111054474	111054674	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001302376)	TTS (NM_001302376)	2670.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.04	8.55	2.28	7.64	4.91	5.02	1.99	2.24	3.34	2.01	4.52	3.13
Merged-chr10-19128020-1	chr10	19127920	19128120	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13729.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.81	2.52	2.28	1.61	8.59	8.47	2.66	3.84	7.08	8.03	3.52	2.82
Merged-chr18-56737526-1	chr18	56737426	56737626	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 5 of 10)	intron (NM_010721, intron 5 of 10)	29713.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	1.01	0.57	0.8	1.23	2.2	3.32	3.53	2.36	0.0	2.01	0.63
Merged-chr12-111455309-1	chr12	111455209	111455409	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009396)	TTS (NM_009396)	12648.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	2.42	3.02	0.0	0.0	2.05	2.51	2.66	0.39	10.03	8.03	1.0	3.45
Merged-chr10-117839582-1	chr10	117839482	117839682	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	Charlie1a|DNA|hAT-Charlie	6392.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.65	3.77	1.14	6.03	4.91	4.7	1.33	3.81	2.36	2.01	0.5	2.19
Merged-chr15-58567626-1	chr15	58567526	58567726	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	152158.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	1.62	2.26	3.99	5.23	4.91	5.02	2.33	7.77	11.6	11.55	8.54	4.7
Merged-chr4-41738137-2	chr4	41738040	41738240	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286551)	TTS (NM_001286551)	3219.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	4.44	5.03	3.42	0.0	6.55	6.59	7.31	7.71	7.87	6.03	8.54	3.45
Merged-chr15-99669082-1	chr15	99668982	99669182	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1295.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	4.04	2.77	2.28	1.61	5.73	3.14	4.98	2.92	4.92	3.51	12.06	5.01
Merged-chr4-53092690-1	chr4	53092590	53092790	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 9 of 49)	intron (NM_013454, intron 9 of 49)	67205.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.21	1.01	0.0	1.61	1.64	0.0	6.64	4.35	2.75	2.01	2.01	1.57
Merged-chr3-81783071-1	chr3	81782971	81783171	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-18954.0	NR_138586	320566.0	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	0.81	0.75	0.0	2.01	2.45	1.88	6.31	3.87	0.79	1.0	1.51	1.25
Merged-chr18-61092652-1	chr18	61092552	61092752	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-12920.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.23	7.29	3.99	2.41	4.91	5.02	2.33	2.97	4.13	9.04	5.02	8.14
Merged-chr14-31001085-1	chr14	31000985	31001185	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029626)	promoter-TSS (NM_029626)	-308.0	NM_001165930	76485.0	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	2.42	1.01	1.71	1.61	3.27	5.02	2.66	3.95	7.87	13.05	5.53	3.13
Merged-chr4-149785476-1	chr4	149785376	149785576	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11209.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.4	2.52	5.13	4.42	1.64	1.88	0.0	3.11	7.28	5.02	4.02	8.14
Merged-chr15-54954098-1	chr15	54953998	54954198	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_155354, exon 2 of 3)	non-coding (NR_155354, exon 2 of 3)	1150.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	3.63	6.79	1.14	8.45	0.0	0.94	1.99	1.09	1.18	0.0	1.0	3.45
Merged-chr5-120586841-1	chr5	120586741	120586941	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1772.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.81	1.26	0.0	1.61	4.91	1.88	1.66	6.56	1.77	1.0	5.53	6.27
Merged-chr4-3715692-1	chr4	3715592	3715792	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028126, exon 1 of 1)	non-coding (NR_028126, exon 1 of 1)	728.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	6.06	3.02	2.28	8.04	2.45	3.14	2.99	4.99	9.05	5.52	9.55	2.51
Merged-chr8-88691608-1	chr8	88691508	88691708	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5420.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.81	1.51	0.0	1.61	2.45	3.14	3.99	3.64	2.56	4.02	5.53	4.7
Merged-chr13-5425487-1	chr13	5425387	5425587	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	432605.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.81	1.01	2.28	3.62	0.41	1.88	2.99	8.05	2.16	1.0	3.01	1.25
Merged-chr15-12206057-1	chr15	12205957	12206157	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1029.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	2.83	4.02	0.57	0.8	1.64	6.27	3.65	4.77	4.13	2.01	4.02	5.01
Merged-chr4-106300934-1	chr4	106300834	106301034	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-15279.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	2.42	1.51	3.99	2.41	4.09	2.51	4.65	3.17	3.54	2.01	1.51	5.33
Merged-chr2-156311551-1	chr2	156311451	156311651	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-922.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.06	3.02	3.99	2.41	3.27	0.94	1.99	2.55	8.46	6.03	4.02	10.96
Merged-chr12-13250951-1	chr12	13250851	13251051	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1777.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	1.21	0.75	1.14	0.0	0.0	0.0	0.0	0.14	8.46	3.51	9.55	3.76
Merged-chr9-111429192-1	chr9	111429092	111429292	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9889.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	1.62	5.03	2.85	4.83	5.73	5.96	0.0	4.29	2.75	2.01	6.03	5.01
Merged-chr19-32775017-1	chr19	32774917	32775117	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	B3A|SINE|B2	17440.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.23	1.01	1.14	1.61	4.5	5.33	2.99	4.04	2.16	0.5	0.0	0.94
Merged-chr6-86523247-1	chr6	86523147	86523347	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2942.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	2.42	1.01	0.57	0.8	2.86	0.31	0.0	2.21	3.15	3.01	3.01	1.25
Merged-chr7-96519402-1	chr7	96519302	96519502	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-177438.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	8.88	5.28	3.42	3.62	4.5	5.96	1.66	4.79	7.28	9.54	4.02	5.33
Merged-chr10-18070868-1	chr10	18070768	18070968	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	14928.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	1.21	1.01	4.56	8.45	1.64	8.15	5.65	4.4	4.72	2.01	4.52	2.19
Merged-chr2-33962237-1	chr2	33962137	33962337	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-74291.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.81	1.51	1.14	1.61	1.64	1.88	1.66	3.84	7.67	5.02	8.04	6.27
Merged-chr11-5543436-2	chr11	5543341	5543541	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER90a|LTR|ERV1	-1224.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	6.86	6.54	1.14	4.83	2.45	0.63	3.99	3.76	5.31	9.04	2.51	3.45
Merged-chr13-117152913-1	chr13	117152813	117153013	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	22888.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	3.23	5.03	4.56	11.26	3.27	5.64	1.66	3.36	6.88	4.52	10.05	7.83
Merged-chr11-85183125-1	chr11	85183025	85183225	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12029.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	10.9	2.01	2.28	3.62	2.45	6.59	0.66	4.07	3.54	3.51	1.51	3.76
Merged-chr13-110928383-1	chr13	110928283	110928483	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24537.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	3.02	9.13	2.41	5.73	3.14	1.0	4.54	2.56	0.5	6.03	1.57
Merged-chr17-23977291-1	chr17	23977191	23977391	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	-2061.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.81	2.01	0.0	0.4	1.23	2.51	4.32	4.43	0.79	2.51	2.01	1.88
Merged-chr14-61766921-1	chr14	61766821	61767021	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84548.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.42	0.75	3.42	0.0	4.09	0.63	2.66	2.86	6.1	2.01	4.52	6.89
Merged-chr8-34485133-1	chr8	34485033	34485233	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155183.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	1.21	2.52	0.0	0.0	1.64	4.39	1.0	2.94	3.54	1.51	1.0	5.95
Merged-chr2-78988379-1	chr2	78988279	78988479	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	118701.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.81	2.52	1.71	6.84	6.14	5.02	1.99	3.79	6.49	3.51	6.53	2.51
Merged-chr1-34839895-1	chr1	34839795	34839995	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3155.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.65	3.02	3.42	1.61	8.59	2.51	3.65	4.57	5.11	6.03	2.51	2.19
Merged-chr7-141428575-1	chr7	141428475	141428675	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021316, intron 1 of 1)	intron (NM_021316, intron 1 of 1)	987.0	NM_001360485	57754.0	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	2.42	0.75	0.57	4.83	4.5	4.39	3.99	1.88	3.34	4.52	11.05	6.27
Merged-chr11-69037007-1	chr11	69036907	69037107	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8630.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	9.29	5.53	9.7	9.25	5.73	6.9	1.33	3.0	4.92	2.51	1.51	3.76
Merged-chr6-86781997-1	chr6	86781897	86782097	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	-6883.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	3.63	2.77	2.85	0.8	2.05	3.14	2.66	1.96	2.36	3.01	2.01	4.7
Merged-chr2-77266036-1	chr2	77265936	77266136	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	14556.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.23	1.76	3.99	2.41	8.18	3.14	0.66	4.93	1.38	4.52	5.53	1.57
Merged-chr6-114922576-1	chr6	114922476	114922676	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-755.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	1.62	3.02	0.0	0.8	3.68	0.31	2.99	2.07	4.33	3.01	3.01	10.34
Merged-chr19-24871422-1	chr19	24871322	24871522	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9580.0	NM_175013	226041.0	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	2.42	2.01	3.42	1.21	2.86	2.2	4.98	0.95	0.59	0.0	1.0	1.88
Merged-chr13-92986957-2	chr13	92986869	92987069	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86335.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	9.69	5.79	3.42	4.83	4.09	7.53	3.32	3.93	6.49	2.51	5.53	5.64
Merged-chr6-121224621-1	chr6	121224521	121224721	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13887.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	2.83	6.04	0.0	6.84	8.18	3.45	1.66	4.85	7.28	6.03	4.52	2.19
Merged-chr7-115040642-1	chr7	115040542	115040742	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89368.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	1.62	1.51	2.28	0.0	5.32	1.88	3.32	5.78	0.39	3.51	8.04	0.63
Merged-chr15-80037920-1	chr15	80037820	80038020	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23112.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.85	2.52	4.56	5.23	6.14	3.76	2.66	4.18	3.74	1.51	2.51	6.27
Merged-chr3-96440859-1	chr3	96440759	96440959	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001256180, exon 3 of 5)	exon (NM_001256180, exon 3 of 5)	11447.0	NM_001256180	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	10.09	5.28	3.42	3.22	3.27	3.14	4.32	0.93	5.7	5.02	7.54	1.57
Merged-chr12-87330470-1	chr12	87330370	87330570	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-30765.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	4.04	1.51	1.14	10.05	5.32	0.94	2.99	8.1	6.49	6.03	8.54	3.45
Merged-chr5-32852218-1	chr5	32852118	32852318	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194340, intron 1 of 10)	intron (NM_194340, intron 1 of 10)	2012.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	2.42	1.76	9.7	6.44	0.0	1.25	3.65	4.35	1.38	6.03	2.01	1.57
Merged-chr12-100776663-1	chr12	100776563	100776763	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2394.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	8.88	6.29	1.14	1.61	7.77	13.8	5.65	5.61	7.47	12.05	6.03	2.51
Merged-chr9-99139143-1	chr9	99139043	99139243	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1068.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	1.62	0.75	3.42	3.22	3.68	1.25	6.64	3.03	7.67	9.04	13.06	5.95
Merged-chr7-129398982-1	chr7	129398882	129399082	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141888.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	1.62	1.51	3.42	2.41	3.68	2.82	1.33	9.45	2.95	4.02	13.06	6.89
Merged-chr10-121458579-1	chr10	121458479	121458679	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	B4|SINE|B4	17671.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.04	2.01	0.57	6.44	2.05	3.14	2.66	0.34	7.28	4.02	8.04	6.58
Merged-chr5-23661394-1	chr5	23661294	23661494	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	14573.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.0	0.0	0.0	0.0	2.45	6.27	1.99	4.21	0.0	0.0	0.0	1.25
Merged-chr8-15027060-1	chr8	15026960	15027160	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_029116, exon 2 of 2)	5' UTR (NM_029116, exon 2 of 2)	16035.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	2.02	2.26	5.13	4.83	2.45	4.7	4.32	9.59	3.15	4.02	2.51	3.45
Merged-chr1-186573599-1	chr1	186573499	186573699	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14918.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.81	3.02	0.0	1.21	0.82	2.82	0.33	1.49	2.16	1.0	2.01	3.45
Merged-chr7-68302796-1	chr7	68302696	68302896	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013811, intron 2 of 8)	intron (NM_001013811, intron 2 of 8)	-26202.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	4.04	2.01	2.28	0.0	8.18	6.9	3.65	3.31	1.77	7.03	13.57	5.01
Merged-chr13-112387523-1	chr13	112387423	112387623	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76547.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	2.02	2.01	0.0	0.0	0.0	0.63	1.33	0.28	8.46	10.54	7.54	5.64
Merged-chr8-125759238-1	chr8	125759138	125759338	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175561, exon 32 of 34)	exon (NM_175561, exon 32 of 34)	25035.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.65	2.01	0.57	1.61	2.05	3.14	4.98	4.21	8.46	5.52	9.55	4.07
Merged-chr4-139293849-1	chr4	139293749	139293949	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151463)	TTS (NR_151463)	16859.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.63	4.53	2.28	3.62	6.95	5.96	3.32	3.2	2.16	1.51	5.53	6.89
Merged-chr16-24913198-1	chr16	24913098	24913298	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-146441.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.63	5.28	3.99	3.22	13.5	3.76	5.31	4.93	4.92	4.52	4.02	1.88
Merged-chr19-17126092-1	chr19	17125992	17126192	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	169974.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	1.62	2.52	2.28	3.62	5.32	3.45	5.98	3.28	1.38	4.52	1.51	3.45
Merged-chr13-93188362-1	chr13	93188262	93188462	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154997, intron 1 of 15)	L1_Rod|LINE|L1	4055.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	3.63	2.01	3.99	2.82	3.68	6.27	2.99	4.04	5.51	3.51	7.03	4.39
Merged-chr14-120216757-1	chr14	120216657	120216857	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-58912.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.5	0.0	1.61	3.68	1.88	0.0	4.12	2.95	1.0	1.0	0.94
Merged-chr17-6270616-1	chr17	6270516	6270716	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033178, intron 1 of 16)	CpG	146.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	3.54	7.03	10.55	15.35
Merged-chr4-150595249-1	chr4	150595149	150595349	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	56925.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.63	2.01	1.14	3.22	6.95	0.0	2.66	3.9	2.56	2.01	6.53	2.51
Merged-chr4-132939618-1	chr4	132939518	132939718	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17067.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.04	3.27	4.56	2.01	5.32	3.14	1.66	4.63	3.54	5.02	5.02	4.07
Merged-chr6-51543966-1	chr6	51543866	51544066	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	-557.0	NM_028035	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.06	3.77	0.57	3.22	3.27	5.02	2.66	4.68	8.46	4.02	3.01	2.51
Merged-chrX-36096206-1	chrX	36096106	36096306	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15902.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	4.04	3.02	13.12	7.24	8.59	5.64	1.66	5.97	3.54	2.01	7.54	3.45
Merged-chr6-42860482-2	chr6	42860378	42860578	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22595.0	NM_147064	259067.0	Mm.451673	NM_147064	ENSMUSG00000049168	Olfr449	GA_x6K02T2P3E9-4722003-4721068|MOR103-1	olfactory receptor 449	protein-coding	4.04	3.27	3.42	2.41	7.77	6.27	11.29	4.68	5.9	9.54	4.02	1.25
Merged-chr14-62963823-1	chr14	62963723	62963923	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20687.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	9.29	8.3	10.27	6.84	5.73	0.63	3.32	2.66	5.51	5.02	12.06	7.52
Merged-chr3-153959610-1	chr3	153959510	153959710	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13826.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	4.85	4.02	1.14	2.01	3.27	1.88	4.32	5.05	8.46	7.53	10.55	2.19
Merged-chr12-77100033-1	chr12	77099933	77100133	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137785.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	1.62	3.77	0.0	0.4	3.27	5.64	0.66	5.27	3.93	0.5	1.0	0.63
Merged-chr2-29101062-1	chr2	29100962	29101162	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR25A|LTR|ERVK	-23930.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	2.83	3.02	2.85	3.62	2.45	4.39	2.66	2.69	2.95	1.51	5.02	5.01
Merged-chr12-4592174-1	chr12	4592074	4592274	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-834.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	1.21	1.26	1.71	0.4	3.68	4.08	2.33	4.51	5.51	1.51	5.53	1.57
Merged-chr4-141659429-1	chr4	141659329	141659529	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	4686.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.4	2.77	4.56	0.0	3.27	7.84	1.99	4.07	2.75	9.54	5.02	4.39
Merged-chr4-134838447-1	chr4	134838347	134838547	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355499, intron 1 of 11)	intron (NM_001355499, intron 1 of 11)	14898.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	5.65	7.55	0.0	5.63	5.73	5.64	4.98	6.45	6.88	5.52	3.01	3.45
Merged-chr10-26862388-1	chr10	26862288	26862488	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 5 of 14)	L1MC5|LINE|L1	89876.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.25	1.51	0.57	6.44	3.27	4.08	6.64	5.16	7.87	9.54	9.04	1.25
Merged-chr19-44297651-1	chr19	44297551	44297751	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	3975.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.65	2.26	2.85	3.62	6.55	4.7	3.65	4.23	5.51	6.03	6.53	3.45
Merged-chr6-31124962-1	chr6	31124862	31125062	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	RSINE1|SINE|B4	-61869.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	2.77	1.71	0.0	1.23	1.88	3.65	4.46	2.95	3.01	4.02	3.45
Merged-chr5-124898902-1	chr5	124898802	124899002	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2z|LINE|L1	36197.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	2.83	2.52	8.56	3.22	9.82	5.96	4.65	6.08	0.0	0.0	0.0	1.25
Merged-chr13-101679558-1	chr13	101679458	101679658	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13072.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.81	2.01	1.14	3.62	0.0	0.31	12.95	2.24	7.28	2.51	3.01	6.89
Merged-chr8-105346630-1	chr8	105346530	105346730	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1340.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	3.23	5.28	3.99	5.23	8.18	6.27	4.65	2.69	6.1	9.04	5.02	5.01
Merged-chr10-118600268-1	chr10	118600168	118600368	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43743.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	2.26	4.56	0.4	4.5	3.14	3.99	4.63	4.92	2.01	6.53	2.82
Merged-chr6-81976134-1	chr6	81976034	81976234	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10185.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	4.44	2.52	4.56	4.02	5.73	3.45	4.98	3.93	10.03	3.01	7.54	0.63
Merged-chr13-117127982-1	chr13	117127882	117128082	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2043.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	3.63	2.77	10.84	9.25	3.27	2.2	1.99	8.02	5.31	7.03	11.05	7.83
Merged-chr13-89383217-1	chr13	89383117	89383317	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-157419.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.42	5.53	1.14	8.85	0.41	0.63	1.33	2.89	5.51	9.54	11.56	11.28
Merged-chr6-88927701-1	chr6	88927601	88927801	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	25450.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	4.44	1.26	8.56	1.61	2.45	2.82	0.66	2.27	5.31	5.02	9.04	1.25
Merged-chr18-63681354-1	chr18	63681254	63681454	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016792, intron 2 of 7)	intron (NM_016792, intron 2 of 7)	11005.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	7.67	6.54	9.13	2.41	5.32	10.35	0.0	2.5	10.62	4.52	7.54	4.39
Merged-chr12-78906923-1	chr12	78906823	78907023	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013738)	promoter-TSS (NM_013738)	15.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	2.42	3.27	5.13	6.84	8.59	0.63	1.33	1.21	4.33	8.54	0.5	2.51
Merged-chr6-26428519-1	chr6	26428419	26428619	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	497093.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.5	2.28	2.41	2.86	4.7	5.31	7.54	2.16	3.51	4.52	2.51
Merged-chr18-75174538-2	chr18	75174440	75174640	+	562.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	122777.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	5.25	6.04	9.7	11.26	4.91	2.2	4.32	8.66	3.74	1.0	2.01	1.57
Merged-chr17-46525858-2	chr17	46525787	46525987	+	562.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081335, exon 14 of 41)	exon (NM_001081335, exon 14 of 41)	20501.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	3.63	3.77	1.71	0.8	5.73	1.57	2.66	3.7	8.46	7.53	6.53	5.64
Merged-chr16-22351411-1	chr16	22351311	22351511	+	562.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	56423.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	2.83	5.53	3.42	0.8	6.55	8.78	5.31	4.29	4.72	7.53	4.02	2.51
Merged-chr7-34655720-1	chr7	34655620	34655820	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360818)	promoter-TSS (NM_001360818)	-211.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	5.65	2.01	2.85	4.42	6.14	5.64	1.99	5.19	5.31	4.02	8.54	3.45
Merged-chr15-86236428-1	chr15	86236328	86236528	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 3 of 12)	intron (NM_145476, intron 3 of 12)	21969.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	2.02	1.01	5.7	1.21	6.14	1.88	2.66	4.46	2.95	8.03	3.01	1.88
Merged-chr8-111313029-1	chr8	111312929	111313129	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029005, intron 10 of 10)	intron (NM_029005, intron 10 of 10)	-12807.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	6.86	4.53	2.28	4.42	6.14	7.53	5.65	4.6	3.15	1.51	8.54	5.01
Merged-chr11-102993062-1	chr11	102992962	102993162	+	562.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026551)	TTS (NM_026551)	6859.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	8.48	2.52	0.57	0.8	9.0	6.59	0.0	1.68	6.49	6.53	5.02	5.95
Merged-chr11-75509168-1	chr11	75509068	75509268	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001029938)	promoter-TSS (NM_001029938)	-926.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	3.63	2.77	3.42	4.02	5.32	5.96	4.98	4.43	5.51	7.53	7.54	6.58
Merged-chr19-6243023-2	chr19	6242910	6243110	+	562.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1342.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	6.06	3.77	5.7	2.41	4.91	6.9	3.99	4.15	4.92	4.52	6.03	7.83
Merged-chr1-156040180-2	chr1	156040082	156040282	+	562.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-658.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	12.52	6.79	5.7	4.02	3.27	4.39	0.66	2.69	9.24	10.54	6.53	4.07
Merged-chr8-107437186-1	chr8	107437086	107437286	+	562.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	788.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	2.42	2.77	2.28	1.21	5.32	3.76	4.32	5.55	3.93	4.02	4.52	7.83
Merged-chr11-120351031-1	chr11	120350931	120351131	+	562.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_038126, exon 2 of 2)	non-coding (NR_038126, exon 2 of 2)	2353.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	5.65	2.52	11.41	2.41	4.91	3.14	8.64	4.43	2.95	2.51	3.01	8.14
Merged-chr18-81566725-2	chr18	81566600	81566800	+	562.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	425380.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.81	1.01	2.85	2.01	3.68	6.9	6.64	3.45	4.72	9.04	7.03	8.14
Merged-chr4-139170442-1	chr4	139170342	139170542	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR79|LTR|ERVL	10213.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	0.81	1.26	1.14	2.01	3.27	5.02	4.32	4.07	0.98	2.51	1.0	0.31
Merged-chr10-84488518-1	chr10	84488418	84488618	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_108059, exon 1 of 4)	non-coding (NR_108059, exon 1 of 4)	225.0	NR_108059	75804.0		NR_108059	ENSMUSG00000020033	4930463O16Rik	-	RIKEN cDNA 4930463O16 gene	ncRNA	5.65	3.27	2.28	3.62	5.32	7.84	0.0	2.55	8.65	5.52	4.02	6.58
Merged-chr18-39240625-1	chr18	39240525	39240725	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246620.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.86	4.28	2.85	1.21	5.32	2.82	3.65	4.12	4.33	5.52	5.02	5.64
Merged-chr1-36022829-1	chr1	36022729	36022929	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45571.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.67	6.54	9.7	7.24	6.14	5.02	2.99	2.38	8.26	10.04	14.57	6.89
Merged-chr7-45716703-1	chr7	45716603	45716803	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	1299.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	6.06	8.55	5.7	1.61	4.5	0.94	1.33	2.19	6.29	6.53	0.5	1.57
Merged-chr13-81703289-1	chr13	81703189	81703389	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081176, intron 1 of 7)	intron (NM_001081176, intron 1 of 7)	7724.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	2.83	6.29	7.42	5.63	2.86	2.82	2.99	7.4	4.72	6.53	3.52	2.82
Merged-chr12-91383713-1	chr12	91383613	91383813	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 1 of 25)	MIRb|SINE|MIR	696.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	2.42	2.26	6.85	0.8	5.73	2.51	2.66	5.1	7.28	7.03	4.02	1.25
Merged-chr18-38211929-1	chr18	38211829	38212029	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2167.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.63	3.02	2.28	4.02	2.45	3.14	2.99	2.36	6.1	9.04	7.03	6.58
Merged-chr13-64250681-1	chr13	64250581	64250781	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	B1_Mur2|SINE|Alu	1981.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.0	1.26	0.0	0.8	2.05	5.33	0.66	4.01	8.06	1.0	2.01	4.07
Merged-chr14-19752414-1	chr14	19752314	19752514	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008695, exon 2 of 21)	exon (NM_008695, exon 2 of 21)	1157.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	7.67	6.79	6.85	8.45	8.59	4.08	4.65	3.84	5.9	1.0	6.53	5.01
Merged-chr12-101980393-1	chr12	101980293	101980493	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016856, intron 1 of 14)	RMER4B|LTR|ERVK	4419.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.81	1.51	5.7	3.22	8.59	0.94	5.98	4.26	7.08	7.03	2.01	1.25
Merged-chr5-72491370-1	chr5	72491270	72491470	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122756, intron 1 of 21)	intron (NM_001122756, intron 1 of 21)	12838.0	NM_016869	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	9.69	4.78	4.56	5.23	2.45	2.2	6.64	4.96	1.97	3.51	6.03	1.57
Merged-chr9-120941096-1	chr9	120940996	120941196	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	L2|LINE|L2	7518.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	2.42	3.77	1.71	0.0	6.14	6.59	3.99	5.33	3.74	6.03	1.0	5.64
Merged-chr5-140623491-1	chr5	140623391	140623591	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175274, exon 14 of 14)	exon (NM_175274, exon 14 of 14)	16150.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.4	0.75	3.42	1.21	6.55	0.94	2.66	1.63	0.79	2.01	1.0	1.88
Merged-chr12-70145171-1	chr12	70145071	70145271	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9000.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	5.65	7.55	1.14	5.63	4.5	6.9	5.65	4.26	5.9	6.03	2.51	1.88
Merged-chr5-100570788-1	chr5	100570688	100570888	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1417.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	2.83	3.02	7.99	2.41	3.68	2.2	3.99	2.61	8.26	5.52	8.04	3.45
Merged-chr1-88221320-1	chr1	88221220	88221420	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-5700.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	2.02	2.52	4.56	5.63	1.64	2.2	10.63	2.3	5.7	6.53	3.01	6.27
Merged-chr9-114785934-1	chr9	114785834	114786034	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-3941.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.85	1.26	1.14	1.21	2.05	5.02	5.98	3.95	2.36	3.01	2.01	4.07
Merged-chrX-167262405-1	chrX	167262305	167262505	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	B3|SINE|B2	1924.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	3.23	0.75	4.56	3.22	5.73	3.14	1.99	3.59	6.49	4.02	6.53	2.51
Merged-chr5-123288315-1	chr5	123288215	123288415	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-56133.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	2.02	7.55	2.85	4.83	2.86	6.27	2.99	2.38	0.0	1.0	0.0	2.51
Merged-chr4-102665194-1	chr4	102665094	102665294	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75351.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.4	4.02	0.0	1.61	6.55	1.57	1.66	4.88	4.52	0.5	1.51	2.51
Merged-chr10-25151392-1	chr10	25151292	25151492	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48778.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	8.08	5.28	9.13	3.62	2.45	6.59	4.98	5.94	6.1	4.02	7.54	5.64
Merged-chr6-125095486-1	chr6	125095386	125095586	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	-495.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	9.69	5.79	4.56	7.64	8.59	6.9	3.99	3.22	7.87	10.54	6.53	4.39
Merged-chr4-139086227-1	chr4	139086127	139086327	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	6743.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	2.42	6.54	5.7	2.82	9.41	6.27	2.33	5.02	7.47	6.53	5.02	8.77
Merged-chr5-9107965-1	chr5	9107865	9108065	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	7228.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.23	2.01	1.14	0.8	1.23	5.02	2.33	4.54	2.75	10.54	3.52	2.51
Merged-chr13-119617388-1	chr13	119617288	119617488	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6431.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	1.62	2.77	0.0	3.22	3.27	1.88	5.31	4.54	1.57	7.03	2.01	12.53
Merged-chr10-67202267-2	chr10	67202150	67202350	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	16500.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.27	2.01	11.41	10.46	5.73	7.84	5.65	4.15	6.49	9.54	3.01	3.76
Merged-chrX-106150518-1	chrX	106150418	106150618	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	RSINE1|SINE|B4	7243.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.0	2.26	0.0	0.0	5.73	1.57	1.99	4.43	0.79	2.51	2.01	1.25
Merged-chr11-117657543-1	chr11	117657443	117657643	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	3254.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	6.46	3.02	4.56	6.44	9.82	2.51	3.32	4.23	5.11	4.52	11.05	11.28
Merged-chr2-13290833-1	chr2	13290733	13290933	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081084, intron 60 of 66)	intron (NM_001081084, intron 60 of 66)	-19418.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	6.46	4.53	9.7	8.04	3.68	4.39	1.99	9.59	7.67	2.01	7.03	5.01
Merged-chr12-24595048-1	chr12	24594948	24595148	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	14329.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	4.44	4.02	1.14	1.61	2.45	6.27	4.98	3.5	5.51	7.03	5.02	3.45
Merged-chr2-16551151-1	chr2	16551051	16551251	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026162, intron 3 of 13)	B3A|SINE|B2	194847.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	1.76	0.0	4.42	9.0	2.82	2.66	3.2	9.24	4.02	9.55	3.76
Merged-chr15-91251730-1	chr15	91251630	91251830	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-59723.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.46	3.52	1.14	2.01	5.32	0.31	3.65	6.08	1.57	0.5	4.52	3.13
Merged-chr2-62653285-1	chr2	62653185	62653385	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7030.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	7.27	6.04	3.99	1.61	7.36	3.45	2.66	6.56	7.67	4.52	7.54	6.27
Merged-chr17-83973898-1	chr17	83973798	83973998	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24654.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	6.46	4.78	1.14	2.01	1.23	5.33	2.99	4.21	4.33	4.52	6.53	5.33
Merged-chr1-72280399-1	chr1	72280299	72280499	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356516, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	3922.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	4.85	5.79	5.7	5.63	5.32	1.57	1.66	7.07	7.08	1.0	6.53	1.88
Merged-chr2-167942424-2	chr2	167942334	167942534	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10107.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.86	6.79	5.7	4.42	5.32	5.33	9.3	6.2	4.52	4.02	3.52	3.45
Merged-chr3-9003259-1	chr3	9003159	9003359	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	945.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.46	2.01	11.41	2.41	6.55	5.96	7.31	5.69	10.03	8.03	7.03	10.96
Merged-chr6-71487107-1	chr6	71487007	71487207	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6770.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	5.65	1.01	5.7	4.02	6.55	2.51	2.99	4.68	6.49	5.02	7.03	4.39
Merged-chr5-64969074-1	chr5	64968974	64969174	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1001.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	2.02	1.51	1.14	0.8	8.59	8.78	2.66	2.02	1.18	1.0	6.03	0.94
Merged-chr9-45478224-1	chr9	45478124	45478324	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-46992.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	2.52	5.7	0.8	1.23	0.63	0.66	1.01	5.11	2.01	10.55	10.02
Merged-chr5-5750150-1	chr5	5750050	5750250	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-833.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	6.06	4.02	1.14	2.01	1.64	7.53	2.99	4.21	3.74	2.51	6.03	3.76
Merged-chr2-73273819-1	chr2	73273719	73273919	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001005343, exon 2 of 2)	exon (NM_001005343, exon 2 of 2)	1893.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	2.42	1.76	2.28	5.63	1.23	5.02	0.33	4.65	2.75	1.0	4.02	1.25
Merged-chr4-75297046-1	chr4	75296946	75297146	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18754.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.86	5.53	4.56	6.84	1.64	2.82	5.98	9.73	5.9	3.01	9.04	5.33
Merged-chr7-106816002-1	chr7	106815902	106816102	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028910, intron 2 of 4)	intron (NM_028910, intron 2 of 4)	1873.0	NM_001360747	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	1.62	4.02	2.28	4.02	4.5	4.39	1.66	4.43	5.7	4.52	5.53	6.58
Merged-chr7-49456336-1	chr7	49456236	49456436	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	180499.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	5.65	1.01	1.14	1.61	4.91	3.45	0.66	5.94	6.88	2.51	6.53	3.13
Merged-chr10-24173857-1	chr10	24173757	24173957	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24540.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	1.62	2.77	7.99	1.21	13.91	1.25	3.99	4.91	7.08	3.01	11.05	2.82
Merged-chr5-74386077-1	chr5	74385977	74386177	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	145665.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	8.08	1.76	14.83	8.85	0.41	0.0	0.0	0.0	6.69	3.51	17.59	5.33
Merged-chr11-20553272-1	chr11	20553172	20553372	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	10019.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.04	2.52	2.85	2.01	6.55	0.63	3.65	3.87	4.52	3.51	9.04	5.95
Merged-chr9-56200847-1	chr9	56200747	56200947	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172924)	TTS (NM_172924)	-39777.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	9.69	2.01	2.28	0.0	4.09	5.64	2.99	4.79	3.93	7.53	8.54	2.19
Merged-chr5-116031342-1	chr5	116031242	116031442	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6914.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.25	4.02	6.85	3.62	4.91	11.92	3.65	4.71	4.92	4.52	2.51	7.52
Merged-chr13-108390798-1	chr13	108390698	108390898	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	74461.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.23	6.29	6.85	4.02	0.41	10.35	1.66	4.26	3.34	8.54	5.53	2.19
Merged-chr7-66113928-1	chr7	66113828	66114028	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	4413.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	2.42	4.53	5.13	4.42	6.55	1.88	0.33	6.22	7.47	3.01	0.5	3.76
Merged-chr6-84742430-1	chr6	84742330	84742530	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	MLT1H|LTR|ERVL-MaLR	-148522.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	2.42	2.52	2.85	3.22	5.73	3.45	3.32	4.65	1.97	2.51	1.51	2.19
Merged-chr1-161286940-1	chr1	161286840	161287040	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35730.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	4.85	6.54	3.42	8.85	4.5	0.0	2.33	2.13	9.64	8.03	8.04	6.89
Merged-chr6-73239047-1	chr6	73238947	73239147	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9458.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	0.0	2.52	0.0	0.8	1.64	0.0	0.33	0.25	4.72	5.02	8.04	5.33
Merged-chr7-99249761-1	chr7	99249661	99249861	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11150.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	6.06	5.53	4.56	9.65	2.45	5.33	2.66	4.26	6.29	12.05	3.01	0.0
Merged-chr1-77513604-1	chr1	77513504	77513704	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	1484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.02	4.28	0.0	7.64	3.27	4.08	7.64	2.69	2.16	3.51	5.53	3.13
Merged-chr17-27700062-1	chr17	27699962	27700162	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178365, intron 1 of 9)	intron (NM_178365, intron 1 of 9)	14823.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	3.23	3.52	1.71	1.61	2.86	4.08	4.32	4.21	5.7	8.54	6.53	1.25
Merged-chr17-64559234-1	chr17	64559134	64559334	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3644.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	5.25	4.78	4.56	7.24	2.86	4.39	9.3	3.93	8.26	5.52	5.02	8.46
Merged-chr4-6469051-1	chr4	6468951	6469151	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-14780.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	6.06	4.02	9.13	4.02	4.91	5.02	8.97	4.68	5.51	8.54	7.03	5.33
Merged-chr9-106362153-1	chr9	106362053	106362253	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-6479.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.21	0.75	0.0	0.0	0.82	1.25	0.0	0.08	11.8	6.53	7.54	4.7
Merged-chr4-33076345-1	chr4	33076245	33076445	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008076, intron 2 of 8)	intron (NM_008076, intron 2 of 8)	13233.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	4.04	1.76	3.42	2.41	0.41	9.09	5.98	1.85	0.98	2.01	1.0	0.63
Merged-chr12-35384404-1	chr12	35384304	35384504	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	150585.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.81	3.27	5.13	6.03	6.95	2.82	4.65	7.57	7.67	8.54	6.53	4.7
Merged-chr10-59268980-2	chr10	59268875	59269075	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47053.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.63	4.02	7.42	6.03	5.32	1.57	6.64	5.3	8.26	6.03	6.03	7.52
Merged-chr10-67296974-1	chr10	67296874	67297074	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11693.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.42	1.01	8.56	0.0	7.36	5.02	3.32	3.59	3.54	2.01	2.51	5.95
Merged-chr13-67728216-1	chr13	67728116	67728316	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	957.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	1.62	3.27	2.28	2.01	3.68	2.2	1.33	3.5	7.47	4.52	5.02	5.33
Merged-chr15-84947588-1	chr15	84947488	84947688	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	4035.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	2.42	3.02	0.0	0.0	2.86	0.0	4.32	3.48	2.56	4.02	3.01	0.63
Merged-chr3-88554431-1	chr3	88554331	88554531	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033526, intron 1 of 10)	intron (NM_033526, intron 1 of 10)	715.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	4.44	2.26	5.13	1.61	5.32	6.59	2.33	3.56	3.54	4.02	7.03	6.89
Merged-chr12-117845122-1	chr12	117845022	117845222	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	1261.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.85	2.01	11.41	8.45	2.86	5.02	3.32	4.4	3.93	6.03	5.53	7.21
Merged-chr17-35469120-1	chr17	35469020	35469220	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010391)	promoter-TSS (NM_010391)	-969.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	2.42	2.52	4.56	0.0	4.5	6.27	3.32	5.19	0.98	0.0	0.5	0.94
Merged-chr17-5479141-1	chr17	5479041	5479241	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	3928.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	1.21	2.01	3.42	3.62	4.91	0.63	3.32	4.49	3.15	4.52	11.56	2.19
Merged-chr18-39150629-1	chr18	39150529	39150729	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 11 of 21)	LTR89|LTR|ERVL?	157484.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.42	1.26	5.7	2.41	1.64	3.45	5.31	9.14	4.33	0.5	6.03	0.94
Merged-chr4-88738676-1	chr4	88738576	88738776	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16168.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.06	5.03	8.56	1.21	3.27	6.27	4.32	4.71	11.21	7.53	11.05	3.45
Merged-chr7-113312005-1	chr7	113311905	113312105	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357070, intron 18 of 19)	intron (NM_001357070, intron 18 of 19)	57334.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	4.44	0.5	2.28	1.61	2.45	5.96	0.66	4.51	3.74	2.01	2.01	1.88
Merged-chr19-10697382-1	chr19	10697282	10697482	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-3386.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	7.27	6.79	3.99	3.62	4.09	11.6	8.64	1.93	2.75	10.04	8.04	3.13
Merged-chr10-16714705-1	chr10	16714605	16714805	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	381077.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.04	1.26	2.85	2.82	3.68	1.88	6.64	5.07	4.13	8.54	6.03	4.07
Merged-chr2-65245664-1	chr2	65245564	65245764	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-7038.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	10.09	2.01	10.27	9.65	0.0	0.63	0.33	2.52	1.57	0.5	0.5	0.94
Merged-chr10-22010385-1	chr10	22010285	22010485	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15719.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.02	2.77	3.99	0.8	2.05	6.9	8.64	3.48	4.33	0.5	6.03	6.58
Merged-chr2-163532169-1	chr2	163532069	163532269	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9552.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	5.65	6.29	3.42	6.44	8.59	4.7	4.32	4.15	3.93	8.54	4.02	7.21
Merged-chr10-14200418-1	chr10	14200318	14200518	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	234039.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.62	1.76	2.28	2.41	1.23	5.33	1.0	3.28	0.59	7.53	2.01	1.25
Merged-chr10-95262603-2	chr10	95262516	95262716	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	61093.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.04	2.26	9.7	7.24	1.64	7.84	4.98	3.73	10.42	7.03	5.02	1.57
Merged-chr13-60491828-1	chr13	60491728	60491928	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110119.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.67	4.53	1.14	5.23	0.82	0.0	0.66	0.81	7.08	12.05	7.54	6.89
Merged-chr3-116047206-1	chr3	116047106	116047306	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38909.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	4.44	9.56	3.42	1.61	1.64	16.62	3.99	1.35	8.26	14.56	4.02	0.63
Merged-chr18-77799436-1	chr18	77799336	77799536	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	B1F|SINE|Alu	-3046.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	2.83	5.79	5.7	2.41	2.05	4.08	2.66	4.77	7.28	10.04	6.03	5.95
Merged-chr13-73764620-1	chr13	73764520	73764720	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	923.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	5.65	6.79	10.84	5.63	9.0	5.96	2.66	2.83	4.52	3.01	7.03	1.25
Merged-chr2-102896608-1	chr2	102896508	102896708	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	5057.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.44	5.28	2.28	1.61	5.32	0.31	1.0	3.0	8.85	6.53	13.57	4.07
Merged-chr11-77515780-1	chr11	77515680	77515880	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026185, exon 1 of 2)	exon (NM_026185, exon 1 of 2)	663.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	7.27	2.77	6.85	2.01	3.68	3.76	8.97	3.48	6.69	5.02	6.03	6.58
Merged-chr18-76978153-1	chr18	76978053	76978253	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33769.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	4.85	3.52	1.14	4.02	4.09	3.45	0.33	8.21	13.77	8.03	8.54	7.52
Merged-chr2-14244340-1	chr2	14244240	14244440	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	14926.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.63	2.26	2.85	3.22	8.18	6.59	7.97	2.16	4.52	5.52	5.53	3.76
Merged-chr4-137707436-1	chr4	137707336	137707536	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001331215)	promoter-TSS (NM_001331215)	-69.0	NM_001331215	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	17.77	8.05	6.28	1.21	4.5	3.14	4.65	2.78	1.57	1.51	6.03	1.88
Merged-chr4-153515664-1	chr4	153515564	153515764	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32834.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	4.44	0.75	0.0	0.8	6.55	0.63	1.99	6.03	0.0	0.0	0.0	1.25
Merged-chr5-101990468-1	chr5	101990368	101990568	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	79453.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.44	1.26	1.14	3.22	3.27	4.39	5.31	7.46	5.9	3.51	6.03	5.01
Merged-chr19-10173106-1	chr19	10173006	10173206	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-9782.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	8.08	2.26	3.42	2.01	3.68	4.7	3.32	4.99	4.92	0.0	0.5	2.51
Merged-chr5-124353398-1	chr5	124353298	124353498	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	1230.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	1.62	5.79	7.99	3.62	3.27	8.15	0.0	4.09	4.52	2.01	1.51	7.52
Merged-chr4-133200024-1	chr4	133199924	133200124	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4369.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.4	4.53	8.56	5.63	3.27	1.88	2.99	3.48	4.92	2.51	3.01	6.27
Merged-chr7-80114192-1	chr7	80114092	80114292	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	1158.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	2.83	5.53	6.28	0.0	2.45	4.39	2.66	3.95	5.11	4.02	1.0	5.64
Merged-chr7-80103776-1	chr7	80103676	80103876	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	11574.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.81	2.52	3.99	2.82	2.45	7.21	2.99	3.45	3.34	1.51	4.02	2.82
Merged-chr2-155682131-1	chr2	155682031	155682231	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019828, intron 1 of 18)	L1MB7|LINE|L1	10253.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	1.21	0.5	1.14	0.0	7.77	7.84	2.66	2.1	1.38	3.01	2.01	0.31
Merged-chr6-108055255-2	chr6	108055162	108055362	+	561.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9783.0	NM_001276356	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	3.23	1.51	1.14	6.44	8.18	6.9	2.99	7.07	7.08	1.51	9.55	4.39
Merged-chr1-155223940-1	chr1	155223840	155224040	+	561.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	65237.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	10.5	6.29	8.56	4.83	6.14	4.08	3.32	7.46	5.31	6.03	7.54	3.76
Merged-chr1-165958331-3	chr1	165958218	165958418	+	561.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198932, intron 1 of 15)	intron (NM_198932, intron 1 of 15)	-23370.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	10.09	5.53	3.42	8.04	0.82	1.88	8.3	4.18	12.78	3.01	8.04	2.19
Merged-chr16-91886043-1	chr16	91885943	91886143	+	561.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45587.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.4	5.28	0.0	2.01	0.0	2.51	1.99	1.35	8.06	4.52	8.04	6.58
Merged-chr14-70768152-1	chr14	70768052	70768252	+	561.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1524.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	4.44	4.53	2.28	2.01	1.23	4.08	3.99	2.64	7.47	3.51	14.07	5.33
Merged-chr7-24817681-2	chr7	24817580	24817780	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1115.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	1.62	3.77	0.0	8.85	8.59	2.82	2.33	6.36	10.42	5.02	10.05	3.76
Merged-chr1-55436785-1	chr1	55436685	55436885	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	30839.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	1.01	6.85	4.02	4.91	6.9	4.32	9.08	2.95	2.51	1.51	4.07
Merged-chr13-49653465-1	chr13	49653365	49653565	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025495)	promoter-TSS (NM_025495)	387.0	NR_073167	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	9.29	8.05	5.13	6.03	10.64	4.08	6.31	5.86	2.36	7.03	11.05	5.01
Merged-chr14-64934044-1	chr14	64933944	64934144	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	B3|SINE|B2	15813.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.63	1.76	1.14	1.61	7.77	5.02	1.0	5.66	5.9	4.02	2.51	1.88
Merged-chr11-93985569-1	chr11	93985469	93985669	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10522.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	13.33	7.04	6.85	6.44	1.64	2.51	1.33	3.28	8.26	5.02	6.03	5.01
Merged-chr2-79228802-2	chr2	79228713	79228913	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26613.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	2.02	5.28	6.28	9.25	2.86	5.96	4.65	3.53	6.49	4.02	7.03	2.19
Merged-chr4-93598636-2	chr4	93598532	93598732	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-263121.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	8.48	6.29	13.12	9.25	1.64	5.02	9.97	4.07	3.54	1.0	2.51	2.19
Merged-chr11-20917747-1	chr11	20917647	20917847	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86639.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.04	2.52	5.13	0.8	6.95	2.82	4.98	4.68	0.0	0.0	0.5	1.57
Merged-chr9-70843620-1	chr9	70843520	70843720	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	B4A|SINE|B4	91188.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.63	0.5	2.28	1.21	2.45	5.64	6.31	1.88	3.93	4.52	6.53	5.33
Merged-chr2-151575697-1	chr2	151575597	151575797	+	561.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	3074.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	7.27	4.28	3.42	8.45	8.59	4.08	3.99	4.46	11.6	7.53	9.55	5.95
Merged-chr15-103281561-2	chr15	103281471	103281671	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	-3554.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	6.46	6.79	5.13	3.62	5.73	5.96	1.33	5.33	11.21	6.53	3.52	5.01
Merged-chr15-67088303-1	chr15	67088203	67088403	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER53|DNA|hAT	88579.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.21	2.77	2.85	1.21	7.36	5.64	4.65	3.25	2.36	2.01	4.02	2.82
Merged-chr3-87504493-2	chr3	87504387	87504587	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21091.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	8.08	6.29	2.28	4.42	3.27	7.84	2.33	3.42	10.03	4.52	6.03	5.01
Merged-chr3-96055623-1	chr3	96055523	96055723	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013841, intron 2 of 14)	intron (NM_013841, intron 2 of 14)	2832.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	4.85	3.02	0.0	1.61	5.32	6.9	6.31	4.35	8.06	7.53	7.03	2.19
Merged-chr7-67360025-1	chr7	67359925	67360125	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	L1MC4|LINE|L1	12833.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	1.21	1.01	1.14	2.01	5.73	5.64	3.99	4.26	9.64	6.03	4.52	2.19
Merged-chr17-25894140-2	chr17	25894036	25894236	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	8091.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	10.09	2.77	11.41	5.63	4.09	3.14	1.99	2.5	7.28	7.03	14.57	8.14
Merged-chr11-82021615-2	chr11	82021498	82021698	+	561.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13979.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.44	5.03	11.41	7.24	10.64	8.78	1.33	4.37	4.33	3.01	13.06	1.88
Merged-chrX-53052641-2	chrX	53052527	53052727	+	561.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_029776)	TTS (NR_029776)	726.0	NR_029776	723910.0		NR_029776	ENSMUSG00000065503	Mir351	Mirn351|mmu-mir-351	microRNA 351	ncRNA	2.83	1.51	6.85	13.67	3.27	4.39	5.98	4.54	2.16	1.51	6.03	4.07
Merged-chr6-87466422-2	chr6	87466311	87466511	+	561.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104483, exon 8 of 11)	non-coding (NR_104483, exon 8 of 11)	29916.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.63	5.28	3.42	1.61	1.64	9.09	1.0	3.03	8.85	12.05	12.06	5.64
Merged-chr5-49090381-1	chr5	49090281	49090481	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	195278.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	1.62	4.53	0.57	4.02	5.32	7.53	7.31	3.53	6.88	5.52	2.51	4.07
Merged-chr10-8387441-1	chr10	8387341	8387541	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131384.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.85	3.27	9.7	6.03	3.27	4.39	5.31	5.36	6.29	7.53	1.0	5.64
Merged-chr17-43675372-1	chr17	43675272	43675472	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285947, intron 1 of 10)	intron (NM_001285947, intron 1 of 10)	8000.0	NM_018887	56050.0	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	0.81	1.76	2.85	3.62	5.32	6.9	1.33	3.31	1.38	6.03	1.0	3.45
Merged-chr5-147848414-1	chr5	147848314	147848514	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12214.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	4.44	4.78	5.7	0.4	2.05	5.33	3.99	4.21	4.33	5.02	5.53	7.52
Merged-chr15-103315159-1	chr15	103315059	103315259	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013866, exon 8 of 8)	exon (NM_013866, exon 8 of 8)	-4721.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	1.62	4.53	1.71	0.0	0.41	2.51	1.99	0.42	7.87	11.05	5.02	3.13
Merged-chr17-56339181-1	chr17	56339081	56339281	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	13131.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	7.27	7.04	5.7	1.61	1.23	4.7	2.66	3.81	5.7	6.03	20.6	5.01
Merged-chr9-116170014-1	chr9	116169914	116170114	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	5349.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.67	7.04	0.0	0.4	1.64	5.33	1.0	1.26	0.0	3.01	1.0	0.31
Merged-chr2-76049796-1	chr2	76049696	76049896	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081033, intron 14 of 19)	intron (NM_001081033, intron 14 of 19)	-67829.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	6.86	4.02	6.28	8.85	6.14	4.08	6.98	3.56	7.87	5.02	3.01	2.82
Merged-chr7-123346176-1	chr7	123346076	123346276	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	23739.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.81	2.77	2.28	0.8	4.91	3.45	5.98	3.87	6.1	1.51	8.54	2.19
Merged-chr12-99953110-1	chr12	99953010	99953210	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028354, intron 15 of 15)	intron (NM_028354, intron 15 of 15)	-11389.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.65	4.53	6.85	4.42	3.68	7.53	3.65	2.72	3.15	5.52	7.54	8.14
Merged-chr1-156425760-1	chr1	156425660	156425860	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4845.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	3.63	4.78	10.84	6.44	2.05	2.82	5.65	8.1	2.16	2.51	0.0	2.51
Merged-chrX-106190271-1	chrX	106190171	106190371	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008828, intron 1 of 10)	intron (NM_008828, intron 1 of 10)	3171.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	4.85	6.79	10.27	0.8	5.73	1.88	3.65	5.13	2.95	2.01	1.0	4.7
Merged-chr1-152609721-1	chr1	152609621	152609821	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	15496.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	1.62	4.02	8.56	0.4	3.27	4.7	0.66	4.32	6.29	4.02	5.53	2.19
Merged-chr2-35733901-1	chr2	35733801	35734001	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37169.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.04	4.28	4.56	3.22	10.23	6.27	0.66	0.9	9.24	6.03	3.52	6.27
Merged-chr14-77921956-1	chr14	77921856	77922056	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	B4A|SINE|B4	17717.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	2.42	1.01	6.85	1.61	4.09	2.2	5.31	7.49	4.52	4.52	7.03	3.45
Merged-chrX-9654653-1	chrX	9654553	9654753	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025975, exon 5 of 5)	3' UTR (NM_025975, exon 5 of 5)	8330.0	NM_025975	67117.0	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	2.42	3.02	0.0	0.0	4.09	5.96	2.33	4.79	0.0	2.01	0.0	0.0
Merged-chr11-4236381-1	chr11	4236281	4236481	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	-404.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	1.62	1.26	3.99	2.82	4.5	3.14	10.63	5.69	2.16	1.51	2.51	0.31
Merged-chrX-166236489-1	chrX	166236389	166236589	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2454.0	NM_001177961	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	2.02	3.02	5.7	2.01	5.73	1.88	2.66	3.93	2.56	5.52	2.51	4.07
Merged-chr12-87391523-1	chr12	87391423	87391623	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3168.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	2.83	1.76	5.7	2.82	4.91	13.17	5.31	5.41	1.97	7.53	12.56	3.45
Merged-chr17-80048434-1	chr17	80048334	80048534	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152119, intron 6 of 13)	intron (NR_152119, intron 6 of 13)	13834.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	2.02	1.26	2.28	1.61	0.41	1.25	3.65	3.98	5.11	6.03	7.03	6.58
Merged-chr2-18202050-1	chr2	18201950	18202150	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010804, intron 16 of 22)	intron (NM_010804, intron 16 of 22)	137465.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	3.63	6.04	4.56	7.24	4.09	4.08	5.65	4.12	3.74	6.53	8.54	0.63
Merged-chr4-59188653-1	chr4	59188553	59188753	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-897.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	5.28	1.14	4.83	2.45	7.84	0.66	4.96	13.57	2.51	5.02	5.01
Merged-chr1-72230850-1	chr1	72230750	72230950	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13143.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	4.04	6.04	9.13	4.83	3.68	4.7	4.32	4.37	9.05	6.53	10.05	3.13
Merged-chr10-118081081-1	chr10	118080981	118081181	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-60706.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.04	2.26	1.14	0.4	1.23	2.51	3.99	2.61	2.95	1.0	2.51	1.25
Merged-chrX-36800144-1	chrX	36800044	36800244	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4547.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	7.67	7.29	7.99	6.03	2.45	1.57	2.66	1.57	4.33	1.51	8.54	1.88
Merged-chr9-46926464-1	chr9	46926364	46926564	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015605, exon 4 of 4)	non-coding (NR_015605, exon 4 of 4)	12861.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	4.04	4.78	3.42	0.8	2.05	15.37	3.99	5.86	10.03	9.04	1.51	0.94
Merged-chr1-152582967-1	chr1	152582867	152583067	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	Arthur1|DNA|hAT-Tip100	42250.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.42	3.02	0.0	1.61	2.86	7.84	4.65	4.71	4.52	5.52	5.02	4.7
Merged-chr8-13661606-1	chr8	13661506	13661706	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	Lx7|LINE|L1	15981.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.83	3.02	0.0	4.02	4.5	1.88	4.32	4.82	4.13	1.51	3.01	1.57
Merged-chr1-137899087-1	chr1	137898987	137899187	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67368.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.21	8.55	4.56	1.61	7.77	0.63	3.99	4.93	5.31	3.51	3.01	6.58
Merged-chr2-153298639-1	chr2	153298539	153298739	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	7223.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	12.52	6.79	2.28	6.03	2.86	1.57	0.33	0.14	0.79	3.01	1.51	1.25
Merged-chrX-96153793-1	chrX	96153693	96153893	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010833, intron 4 of 12)	intron (NM_010833, intron 4 of 12)	57748.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	8.88	3.02	12.55	3.62	1.64	1.25	1.33	2.41	1.18	3.51	5.02	1.57
Merged-chr7-121047404-1	chr7	121047304	121047504	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021554, intron 1 of 4)	B2_Mm2|SINE|B2	12959.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	3.23	4.53	9.7	1.21	3.68	5.02	1.33	2.97	7.87	2.01	7.54	3.76
Merged-chr6-116072450-1	chr6	116072350	116072550	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-77445.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	1.51	0.0	0.8	1.23	3.76	5.98	3.87	1.57	2.51	1.51	2.51
Merged-chr18-4959350-1	chr18	4959250	4959450	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87239.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	2.83	1.26	2.85	9.25	1.23	0.63	7.64	5.89	2.36	2.51	7.03	3.45
Merged-chr1-171330824-1	chr1	171330724	171330924	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	1255.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	7.67	6.04	3.99	5.63	2.86	3.76	2.33	4.12	2.75	5.02	0.0	1.88
Merged-chr3-105046039-2	chr3	105045954	105046154	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	6899.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	9.29	4.53	10.27	4.02	6.14	7.84	9.63	5.44	7.67	4.52	7.03	3.13
Merged-chr3-146811436-1	chr3	146811336	146811536	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	1510.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	2.42	2.01	6.85	1.21	4.91	4.39	1.99	3.62	1.97	4.02	11.05	7.52
Merged-chr10-96503480-1	chr10	96503380	96503580	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113521.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.44	2.52	7.99	4.02	7.77	3.45	9.63	4.85	7.08	5.02	2.51	2.82
Merged-chr2-178870142-1	chr2	178870042	178870242	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	439627.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	2.42	1.51	3.99	0.8	4.5	1.25	4.32	4.88	6.88	3.01	9.04	4.07
Merged-chr11-106206787-1	chr11	106206687	106206887	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026009, intron 6 of 12)	intron (NM_026009, intron 6 of 12)	9580.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	1.62	2.77	3.42	2.01	7.77	3.76	3.99	4.74	5.7	0.5	4.52	2.19
Merged-chr15-83096113-1	chr15	83096013	83096213	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4092.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	5.65	6.29	7.99	2.82	7.77	5.64	3.32	4.18	6.69	5.52	7.03	4.07
Merged-chr1-43827134-1	chr1	43827034	43827234	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	574.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	6.46	7.55	11.41	8.45	10.23	7.21	13.29	8.19	7.47	7.53	3.01	7.52
Merged-chr1-57500000-1	chr1	57499900	57500100	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93326.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.81	0.75	0.0	4.02	6.14	3.45	0.33	9.36	0.79	0.0	1.0	0.0
Merged-chr17-31052455-1	chr17	31052355	31052555	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16-int|LTR|ERVK	-5239.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.23	5.53	6.28	5.63	6.14	14.11	0.66	5.94	8.65	9.54	5.53	1.88
Merged-chr14-30699883-1	chr14	30699783	30699983	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14966.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	2.83	2.52	2.85	0.0	3.27	5.33	1.66	6.76	3.34	5.52	4.02	5.95
Merged-chr4-125201845-1	chr4	125201745	125201945	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73964.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.65	3.52	11.98	8.45	5.73	1.88	1.99	6.67	2.95	0.0	5.53	3.45
Merged-chr6-134064271-1	chr6	134064171	134064371	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	28571.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.06	1.01	5.7	3.22	4.5	2.82	0.0	4.43	11.8	2.51	9.04	3.45
Merged-chr7-144938934-1	chr7	144938834	144939034	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	991.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.4	2.26	1.14	8.45	6.55	6.9	0.66	2.8	2.75	4.02	2.01	1.57
Merged-chr19-40371925-1	chr19	40371825	40372025	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034962, intron 7 of 22)	intron (NM_001034962, intron 7 of 22)	30385.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	2.02	3.52	3.42	4.02	1.23	3.14	3.99	6.59	1.18	3.51	1.51	2.19
Merged-chr12-82195125-1	chr12	82195025	82195225	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	25109.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.23	1.51	4.56	7.64	2.05	8.15	2.66	3.59	4.13	6.53	11.05	2.51
Merged-chr4-141853540-1	chr4	141853440	141853640	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-7181.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	4.85	3.52	0.0	0.0	1.23	4.39	2.66	4.32	1.57	2.01	3.52	2.51
Merged-chr13-111748777-1	chr13	111748677	111748877	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011945, exon 20 of 20)	3' UTR (NM_011945, exon 20 of 20)	60216.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.5	1.14	0.0	5.32	4.7	0.33	4.35	1.77	4.02	0.5	0.31
Merged-chr8-70674179-2	chr8	70674078	70674278	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015816, intron 1 of 4)	ID_B1|SINE|B4	947.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	1.62	3.52	7.42	3.62	7.77	5.64	4.32	11.16	9.64	7.03	3.52	3.76
Merged-chr4-127169657-1	chr4	127169557	127169757	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198618, intron 1 of 11)	CpG	453.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	1.62	3.52	1.14	4.42	8.18	5.02	3.32	4.54	4.33	3.01	7.54	3.45
Merged-chr10-53499712-1	chr10	53499612	53499812	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_037973, exon 4 of 4)	non-coding (NR_037973, exon 4 of 4)	19277.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	1.21	3.52	4.56	5.63	1.64	5.64	3.32	4.63	3.93	5.02	11.05	4.07
Merged-chr7-97313326-1	chr7	97313226	97313426	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177412, intron 7 of 9)	intron (NM_001177412, intron 7 of 9)	12638.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	7.27	2.52	4.56	4.42	7.36	1.88	2.66	0.93	4.72	6.03	4.52	4.39
Merged-chr13-41539767-1	chr13	41539667	41539867	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52407.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	1.62	6.04	4.56	4.83	5.32	6.27	3.99	5.19	3.15	1.0	6.03	1.88
Merged-chr14-32572698-1	chr14	32572598	32572798	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081221, intron 18 of 20)	intron (NM_001081221, intron 18 of 20)	-26710.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	5.65	4.53	5.7	4.83	8.59	5.33	4.65	3.87	1.97	2.01	6.53	1.57
Merged-chr5-23783134-1	chr5	23783034	23783234	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178403, intron 1 of 15)	intron (NM_178403, intron 1 of 15)	577.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	2.02	5.53	2.28	1.21	5.73	5.96	3.65	4.54	4.52	3.51	4.02	4.39
Merged-chr14-117779199-2	chr14	117779097	117779297	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	174650.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	4.44	3.27	9.13	3.62	2.05	5.96	4.98	4.79	6.88	5.02	17.08	7.52
Merged-chr7-28446577-1	chr7	28446477	28446677	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_022024, exon 7 of 7)	3' UTR (NM_022024, exon 7 of 7)	-5408.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	9.69	5.53	1.14	0.8	3.68	6.9	2.66	1.49	8.65	8.54	8.54	4.39
Merged-chr19-17246162-1	chr19	17246062	17246262	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	93343.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.25	7.29	7.42	11.26	6.55	4.39	9.63	5.58	2.95	0.0	2.51	0.63
Merged-chr10-91139288-1	chr10	91139188	91139388	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15325.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	4.85	5.03	0.0	0.8	3.27	4.08	4.32	5.05	4.92	8.03	7.03	5.95
Merged-chr7-120830414-1	chr7	120830314	120830514	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12417.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.23	2.77	12.55	9.65	4.91	3.76	6.98	4.71	11.8	6.53	10.05	8.77
Merged-chr6-31111039-1	chr6	31110939	31111139	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-47946.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	1.62	1.01	5.13	2.82	2.05	2.82	6.31	3.59	6.29	5.02	8.54	4.07
Merged-chr1-91278652-1	chr1	91278552	91278752	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355764, intron 8 of 10)	intron (NM_001355764, intron 8 of 10)	-19686.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	11.31	5.28	23.96	10.05	1.64	0.31	0.0	0.28	1.38	0.0	4.02	1.57
Merged-chr4-129702222-1	chr4	129702122	129702322	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045036)	TTS (NR_045036)	-5377.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	3.23	4.28	3.42	4.02	11.45	3.76	3.99	3.64	10.03	3.01	8.54	2.19
Merged-chr11-96938593-1	chr11	96938493	96938693	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_134021, exon 7 of 7)	3' UTR (NM_134021, exon 7 of 7)	5426.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	8.08	6.54	7.42	3.62	1.23	0.63	0.33	2.44	5.31	1.0	0.0	0.0
Merged-chr1-105813453-1	chr1	105813353	105813553	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 3 of 9)	intron (NM_009399, intron 3 of 9)	32730.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.85	1.01	3.99	2.82	3.27	5.02	5.98	5.19	6.49	6.03	3.52	3.76
Merged-chr1-173981706-1	chr1	173981606	173981806	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	1138.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.0	0.75	7.99	6.44	4.5	5.02	0.66	6.17	0.39	0.0	0.0	0.31
Merged-chr10-61052394-1	chr10	61052294	61052494	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21091.0	NR_040638	327760.0	Mm.23529	NR_040638	ENSMUSG00000093568	Gm20611	4930565A17	predicted gene 20611	ncRNA	0.0	2.26	2.85	3.62	1.64	3.45	4.98	2.55	10.03	9.54	3.52	2.51
Merged-chr18-43322089-1	chr18	43321989	43322189	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291455, exon 14 of 14)	3' UTR (NM_001291455, exon 14 of 14)	51183.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	1.21	4.02	5.13	1.21	6.14	4.7	0.33	5.44	0.79	0.5	2.01	1.57
Merged-chr7-19876135-2	chr7	19876018	19876218	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11847.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	4.85	4.78	2.28	2.41	2.05	3.76	3.99	4.32	11.8	1.51	4.52	8.77
Merged-chr13-58486817-1	chr13	58486717	58486917	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-83474.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	8.88	7.55	9.13	2.41	4.09	1.57	0.66	5.21	4.33	4.02	5.02	3.13
Merged-chr17-8164163-2	chr17	8164033	8164233	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1385.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	2.42	6.79	2.85	6.03	7.36	6.27	5.31	3.45	2.16	5.02	1.51	4.07
Merged-chr13-31082628-1	chr13	31082528	31082728	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108581.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	1.62	3.77	4.56	7.24	4.5	6.27	2.33	4.71	4.33	1.0	1.0	1.25
Merged-chr7-142385483-1	chr7	142385383	142385583	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009983, exon 2 of 9)	exon (NM_009983, exon 2 of 9)	2387.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	8.08	4.78	6.28	3.62	6.55	2.51	2.99	4.85	3.15	3.01	5.53	5.33
Merged-chr11-83664255-1	chr11	83664155	83664355	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1671.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.65	8.3	5.13	10.05	9.41	6.27	2.66	2.52	1.38	10.54	5.02	2.82
Merged-chr16-93081741-2	chr16	93081646	93081846	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-255672.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.23	5.03	6.28	7.64	4.91	4.7	1.99	5.5	6.29	2.51	13.57	9.08
Merged-chrX-47846245-1	chrX	47846145	47846345	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053123, intron 16 of 23)	Lx9|LINE|L1	46368.0	NM_053123	93761.0	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.81	4.02	7.42	4.83	4.91	5.33	3.32	5.69	3.74	1.51	1.0	1.25
Merged-chr5-142903934-1	chr5	142903834	142904034	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_007393, exon 6 of 6)	exon (NM_007393, exon 6 of 6)	2820.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.27	6.79	3.99	3.62	3.27	2.82	4.65	0.06	6.88	11.55	7.54	5.95
Merged-chr1-80720292-1	chr1	80720192	80720392	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	Charlie22a|DNA|hAT-Charlie	38261.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.81	2.52	0.0	1.61	0.82	2.82	3.99	1.99	9.83	1.0	2.51	4.07
Merged-chr7-98770597-1	chr7	98770497	98770697	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-64515.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.81	1.51	4.56	6.84	4.5	12.86	4.98	4.18	1.77	2.51	4.02	5.95
Merged-chr11-77404212-1	chr11	77404112	77404312	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 4 of 14)	intron (NM_177710, intron 4 of 14)	55932.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	1.14	1.21	6.95	4.39	9.63	5.83	5.7	8.03	6.53	3.76
Merged-chr4-145201154-1	chr4	145201054	145201254	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6149.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	2.42	3.77	2.28	0.4	3.27	1.25	5.31	5.86	2.75	4.52	1.0	2.19
Merged-chr1-181127297-1	chr1	181127197	181127397	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026171, intron 9 of 22)	RSINE1|SINE|B4	16907.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	8.48	3.77	1.14	1.21	9.0	6.9	0.33	0.45	3.34	6.03	5.02	2.51
Merged-chr12-102453130-2	chr12	102453041	102453241	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13328.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.25	3.77	5.7	8.85	2.45	5.64	6.98	4.57	7.87	3.51	6.53	4.07
Merged-chr6-148443574-1	chr6	148443474	148443674	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	778.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	2.02	1.26	3.42	1.21	2.45	0.63	4.32	3.0	5.51	6.53	5.53	5.33
Merged-chr4-14939360-1	chr4	14939260	14939460	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356579, intron 3 of 5)	intron (NM_001356579, intron 3 of 5)	8719.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	8.08	5.28	12.55	4.02	0.41	2.82	2.66	8.72	11.01	5.02	20.6	5.64
Merged-chr15-100023100-1	chr15	100023000	100023200	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-15564.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.23	8.05	0.0	3.22	7.36	2.2	0.66	4.54	9.24	0.5	3.01	4.7
Merged-chr2-10359943-1	chr2	10359843	10360043	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10508.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.0	1.26	0.0	0.4	0.0	1.25	4.98	1.09	1.77	0.0	1.0	0.63
Merged-chr10-41393650-1	chr10	41393550	41393750	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56708.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	3.23	3.27	1.71	1.61	5.32	5.96	7.31	4.09	5.11	2.51	6.03	8.14
Merged-chr1-191165590-1	chr1	191165490	191165690	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001109759)	promoter-TSS (NM_001109759)	-773.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	6.86	8.55	0.0	1.61	0.0	5.96	0.66	0.34	0.59	3.51	0.5	1.57
Merged-chr8-54493333-1	chr8	54493233	54493433	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	36665.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	1.62	9.56	1.71	8.04	5.32	1.88	1.0	6.56	8.85	9.04	13.06	2.82
Merged-chr16-92402810-1	chr16	92402710	92402910	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2732.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	1.62	0.0	1.71	2.41	4.5	8.78	4.32	3.53	2.56	4.02	7.03	1.88
Merged-chr2-166974205-2	chr2	166974113	166974313	+	560.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-9496.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.25	6.79	5.13	6.84	11.86	4.08	4.32	5.24	4.33	3.01	4.02	3.45
Merged-chr10-34201493-1	chr10	34201393	34201593	+	560.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	6058.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	2.52	0.0	0.0	2.05	4.7	3.32	5.64	2.95	5.02	1.0	2.51
Merged-chr8-34964384-1	chr8	34964284	34964484	+	560.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	1306.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.44	2.26	4.56	2.01	4.5	3.76	4.65	3.17	9.24	5.52	7.54	5.01
Merged-chr6-129182725-1	chr6	129182625	129182825	+	560.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_053109, intron 1 of 4)	B3A|SINE|B2	2110.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	8.48	6.04	9.13	5.23	2.05	6.9	4.32	1.91	4.52	9.54	5.53	8.14
Merged-chr6-86871979-1	chr6	86871879	86872079	+	560.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040106, intron 1 of 20)	intron (NM_001040106, intron 1 of 20)	22462.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	6.46	5.28	3.42	6.44	4.09	6.27	0.66	4.99	4.72	3.01	6.03	8.46
Merged-chr10-128441916-1	chr10	128441816	128442016	+	560.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_104288)	TTS (NR_104288)	-16764.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	5.65	6.29	8.56	3.22	8.59	5.02	4.65	5.72	0.2	0.0	0.0	1.57
Merged-chr7-29125194-1	chr7	29125094	29125294	+	560.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009109)	promoter-TSS (NM_009109)	-43.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	7.27	4.02	3.42	2.01	4.91	4.39	7.97	3.98	7.87	9.04	12.56	2.19
Merged-chr2-83682831-1	chr2	83682731	83682931	+	560.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38253.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.4	0.0	2.28	0.0	0.82	0.0	0.0	0.53	8.26	5.02	11.05	6.58
Merged-chr2-128393051-2	chr2	128392964	128393164	+	560.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36287.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	8.88	1.51	2.85	1.61	6.55	5.33	4.65	4.29	7.28	8.54	10.05	6.89
Merged-chr10-34231905-1	chr10	34231805	34232005	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24354.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.23	6.54	3.42	6.44	9.0	8.15	1.66	0.73	10.23	5.52	7.03	4.39
Merged-chr8-108576942-1	chr8	108576842	108577042	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_077224, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	7735.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.85	3.27	0.0	4.02	4.5	3.14	1.99	7.71	5.9	12.05	6.53	4.07
Merged-chr16-38701532-1	chr16	38701432	38701632	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11503.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	10.09	5.03	5.7	1.61	3.27	13.48	4.65	1.29	9.05	7.53	8.04	2.82
Merged-chr8-46763693-1	chr8	46763593	46763793	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	23948.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.06	0.75	1.14	0.8	8.18	5.33	1.0	3.93	1.57	1.0	4.02	4.7
Merged-chr2-26325954-1	chr2	26325854	26326054	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355575, intron 7 of 13)	intron (NM_001355575, intron 7 of 13)	6184.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	5.65	1.76	6.85	1.21	4.91	3.45	3.65	4.74	4.72	4.02	8.54	5.33
Merged-chr19-46321890-1	chr19	46321790	46321990	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347454, intron 6 of 17)	intron (NM_001347454, intron 6 of 17)	4976.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	1.62	6.04	10.27	2.82	1.64	1.88	1.0	3.45	7.67	5.52	9.55	4.07
Merged-chr2-155274871-1	chr2	155274771	155274971	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1493.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	1.62	6.54	9.13	4.02	4.91	5.64	1.33	5.36	1.97	4.02	3.01	3.76
Merged-chr8-104395151-1	chr8	104395051	104395251	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	CpG	656.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	2.83	9.81	7.42	2.01	4.5	5.02	8.64	5.52	5.9	8.03	7.03	2.82
Merged-chr2-38436137-1	chr2	38436037	38436237	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-75560.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.06	4.28	7.42	2.41	2.86	9.09	3.32	3.31	3.15	2.51	5.02	0.94
Merged-chr8-124033441-1	chr8	124033341	124033541	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029876, intron 3 of 8)	intron (NM_001029876, intron 3 of 8)	9968.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	1.21	4.53	4.56	1.21	2.45	5.02	1.66	3.5	0.0	1.0	4.02	0.63
Merged-chr6-88384829-1	chr6	88384729	88384929	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	61710.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	6.46	2.26	2.28	6.03	4.09	2.51	4.32	4.35	2.56	7.53	2.01	4.07
Merged-chr10-21623907-1	chr10	21623807	21624007	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	30762.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	8.88	1.51	2.28	3.22	1.23	1.88	3.99	8.19	3.54	2.51	10.55	2.19
Merged-chr6-51016647-2	chr6	51016539	51016739	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240524.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.23	0.0	0.0	1.61	0.82	4.39	2.66	5.78	5.31	2.51	10.55	8.46
Merged-chr9-115711112-1	chr9	115711012	115711212	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198343.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	3.23	4.02	2.28	4.83	2.05	4.39	1.66	2.55	6.29	2.51	9.55	4.39
Merged-chr17-17839538-1	chr17	17839438	17839638	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001162909)	TTS (NM_001162909)	8563.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	1.62	3.52	4.56	4.83	2.86	3.76	3.32	4.09	6.88	4.02	7.03	2.51
Merged-chr9-89211421-1	chr9	89211321	89211521	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359993)	promoter-TSS (NM_001359993)	37.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.04	1.51	4.56	5.63	3.68	7.53	2.66	3.0	4.13	6.03	8.54	5.01
Merged-chr11-18059882-1	chr11	18059782	18059982	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	-36104.0	NR_131129	327872.0		NR_131129	ENSMUSG00000085453	Gm12018	-	predicted gene 12018	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.09	7.67	10.04	7.03	5.64
Merged-chr19-41380739-1	chr19	41380639	41380839	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	4331.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	2.83	1.26	1.14	1.61	1.23	5.64	1.99	3.62	5.51	5.02	0.5	0.31
Merged-chr7-74693264-1	chr7	74693164	74693364	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-138484.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	1.21	4.02	5.7	6.03	5.73	0.63	8.64	5.21	5.11	16.57	10.55	3.13
Merged-chr11-107639827-1	chr11	107639727	107639927	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198298, intron 20 of 31)	Lx9|LINE|L1	2105.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	4.04	3.52	0.0	2.41	4.09	2.2	4.65	5.5	3.54	2.51	3.01	1.88
Merged-chr13-56575834-1	chr13	56575734	56575934	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-27296.0	NM_010702	16841.0	Mm.16973	NM_010702	ENSMUSG00000021539	Lect2	-	leukocyte cell-derived chemotaxin 2	protein-coding	6.46	3.02	6.85	8.45	9.41	4.7	2.33	3.2	6.88	5.02	9.04	3.45
Merged-chr2-129410507-1	chr2	129410407	129410607	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39368.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.62	1.26	3.42	1.61	0.41	8.78	5.65	1.04	4.52	5.02	0.0	0.63
Merged-chr19-10520591-3	chr19	10520478	10520678	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025333, intron 1 of 3)	B2_Mm2|SINE|B2	4631.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	9.69	8.05	1.14	3.22	9.82	12.86	3.32	3.25	10.03	14.06	9.04	7.21
Merged-chr19-34421114-1	chr19	34421014	34421214	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	54021.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	2.42	2.52	2.85	6.44	3.27	4.39	2.66	4.04	4.33	11.55	12.56	7.21
Merged-chr11-31735566-1	chr11	31735466	31735666	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63704.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.0	2.77	2.28	0.8	4.09	2.2	2.99	3.87	4.52	1.0	2.51	7.83
Merged-chr2-32601656-1	chr2	32601556	32601756	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	1947.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	7.77	10.35	2.66	3.0	8.85	3.01	10.05	4.39
Merged-chr5-142478970-1	chr5	142478870	142479070	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172725)	TTS (NM_172725)	15039.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	7.27	2.52	3.99	1.61	1.23	2.51	1.0	4.49	9.64	11.55	4.52	5.01
Merged-chr4-133680342-1	chr4	133680242	133680442	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080819, exon 20 of 20)	exon (NM_001080819, exon 20 of 20)	-7176.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	2.83	2.01	5.7	0.8	9.0	6.9	5.31	2.36	7.87	10.54	2.51	4.07
Merged-chr12-73953045-1	chr12	73952945	73953145	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11485.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.81	2.77	1.71	2.41	4.5	0.63	0.66	4.12	4.72	5.02	3.52	0.31
Merged-chr1-152292556-1	chr1	152292456	152292656	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94126.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	3.23	1.01	1.71	0.0	9.41	1.88	1.33	4.12	2.56	3.01	4.52	0.63
Merged-chr18-4891999-1	chr18	4891899	4892099	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	79513.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.44	1.76	1.14	2.82	2.05	5.02	7.97	3.98	5.51	5.52	9.04	5.33
Merged-chr2-71539166-1	chr2	71539066	71539266	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1275.0	NR_002854	111970.0	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	7.27	5.28	3.99	2.01	4.5	3.45	3.65	3.98	3.74	4.02	11.56	3.45
Merged-chr12-79144397-1	chr12	79144297	79144497	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	13609.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.0	1.51	1.14	0.8	6.55	7.21	3.65	4.88	3.74	5.52	3.52	0.94
Merged-chr13-111797738-1	chr13	111797638	111797838	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11255.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.67	6.79	2.28	6.03	10.23	6.59	8.3	4.07	5.31	2.51	5.02	3.76
Merged-chr6-31116060-1	chr6	31115960	31116160	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-52967.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	8.08	5.28	9.7	9.25	4.91	3.76	7.31	4.71	4.52	10.04	15.07	8.46
Merged-chr1-166940359-1	chr1	166940259	166940459	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	59371.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0	0.33	0.0	9.05	1.51	9.55	3.76
Merged-chr18-35021369-1	chr18	35021269	35021469	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67018.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.81	2.77	3.42	5.63	9.82	6.27	0.66	3.73	5.51	1.51	1.51	6.58
Merged-chr1-88223294-1	chr1	88223194	88223394	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3726.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.23	4.02	7.42	0.8	6.95	1.25	2.33	0.64	8.46	2.01	3.01	5.01
Merged-chr9-36769426-1	chr9	36769326	36769526	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1848.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	3.23	4.28	7.99	0.8	2.45	5.33	3.65	1.77	6.29	2.01	2.51	5.64
Merged-chr11-21009276-1	chr11	21009176	21009376	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82048.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.27	6.54	0.0	3.62	5.32	2.51	1.66	2.89	3.74	11.55	12.06	4.39
Merged-chr10-17431193-1	chr10	17431093	17431293	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-292035.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.46	2.01	3.42	5.63	2.05	5.96	1.99	8.07	3.54	3.01	11.05	2.51
Merged-chr8-111095279-1	chr8	111095179	111095379	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198308, intron 1 of 17)	intron (NM_198308, intron 1 of 17)	534.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	5.25	2.01	9.7	5.23	3.68	4.08	3.99	3.45	4.72	5.52	5.02	3.76
Merged-chr9-60794899-1	chr9	60794799	60794999	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	CpG	457.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.4	7.04	1.14	8.04	5.73	2.82	4.65	4.15	5.7	10.04	7.03	5.64
Merged-chr5-53570901-1	chr5	53570801	53571001	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	15122.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.23	2.52	14.83	3.22	0.82	0.94	4.65	5.41	1.38	5.02	4.02	0.63
Merged-chr8-84726042-1	chr8	84725942	84726142	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 6 of 9)	PB1D10|SINE|Alu	24585.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.46	6.79	10.27	5.63	4.09	7.53	1.33	4.68	5.51	4.02	1.0	2.51
Merged-chr11-98000022-1	chr11	97999922	98000122	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-3849.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.25	6.54	3.42	0.0	4.5	0.63	1.33	1.6	10.42	12.05	5.53	5.33
Merged-chr13-49253043-1	chr13	49252943	49253143	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1-int|LTR|ERVL-MaLR	-4337.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	3.23	2.77	6.85	0.8	0.0	5.33	2.66	3.62	3.93	4.52	5.02	3.13
Merged-chr2-148752075-1	chr2	148751975	148752175	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	1714.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	2.83	3.02	0.0	1.61	6.14	3.45	1.0	3.48	5.9	6.53	8.54	5.64
Merged-chr18-35751550-1	chr18	35751450	35751650	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10996.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	1.62	1.01	5.7	0.8	9.41	0.0	3.99	1.04	3.54	2.01	3.01	3.13
Merged-chr2-12709232-1	chr2	12709132	12709332	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-214809.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	1.62	2.01	0.0	0.4	2.45	5.64	3.65	4.6	4.92	2.01	3.01	3.76
Merged-chr10-94041602-1	chr10	94041502	94041702	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	5601.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.0	2.52	2.28	2.01	0.0	0.0	0.0	0.76	14.55	17.07	10.05	5.95
Merged-chr3-135616900-1	chr3	135616800	135617000	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 8 of 24)	Lx7|LINE|L1	74647.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.65	3.27	5.13	5.23	3.68	4.39	3.65	7.37	3.93	4.52	9.04	2.51
Merged-chr15-91240477-1	chr15	91240377	91240577	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48470.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.63	1.51	3.99	0.0	0.41	0.0	3.65	4.88	1.18	4.52	1.0	0.31
Merged-chr5-123064244-1	chr5	123064144	123064344	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	YREP_Mm|Unknown|Unknown	-12031.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	8.08	5.79	0.57	5.23	3.68	4.39	2.66	0.53	4.92	2.51	5.53	2.51
Merged-chr6-38349163-1	chr6	38349063	38349263	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	B2_Mm1a|SINE|B2	5440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	7.27	5.79	6.85	4.02	4.5	11.29	2.66	2.19	6.29	9.04	6.03	5.64
Merged-chr11-78806034-1	chr11	78805934	78806134	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-20561.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	4.04	2.52	3.99	0.0	1.23	4.08	1.0	6.28	3.15	0.5	3.01	4.07
Merged-chr7-116033917-1	chr7	116033817	116034017	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025559, intron 1 of 15)	CpG	1938.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	0.81	7.29	5.13	9.25	2.45	0.94	3.32	4.07	1.57	3.51	3.52	2.82
Merged-chr9-62244554-1	chr9	62244454	62244654	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040769)	promoter-TSS (NR_040769)	-454.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	1.62	4.53	2.28	0.8	5.32	5.02	1.33	4.4	5.31	3.51	6.53	5.01
Merged-chr16-93767100-2	chr16	93767004	93767204	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27797.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	6.86	13.08	7.99	4.02	2.86	5.96	2.33	4.4	4.33	5.52	4.52	1.57
Merged-chr19-55774622-1	chr19	55774522	55774722	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	32812.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.65	2.26	3.42	2.82	6.14	1.57	3.99	2.97	6.29	6.03	6.03	3.13
Merged-chr19-45154625-1	chr19	45154525	45154725	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021901, intron 2 of 2)	intron (NM_021901, intron 2 of 2)	3910.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	6.46	7.04	4.56	9.65	13.09	7.84	7.97	3.25	4.72	7.53	2.01	1.88
Merged-chr5-53572748-1	chr5	53572648	53572848	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	L1MB7|LINE|L1	16969.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.27	7.04	4.56	0.4	4.91	5.02	1.66	5.24	10.62	6.53	0.0	2.19
Merged-chr9-100528605-1	chr9	100528505	100528705	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	RMER6A|LTR|ERVK	17529.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.4	1.76	1.14	0.8	4.09	7.53	1.0	3.36	9.24	6.53	5.02	4.07
Merged-chr17-5527488-1	chr17	5527388	5527588	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	RLTR10D2|LTR|ERVK	34888.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.67	2.01	2.85	0.4	8.59	3.76	4.98	1.26	8.26	11.55	8.54	9.4
Merged-chr4-53079584-1	chr4	53079484	53079684	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013454, exon 18 of 50)	exon (NM_013454, exon 18 of 50)	67704.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	2.52	4.56	0.4	3.27	1.88	2.33	1.46	9.24	3.51	4.02	7.21
Merged-chr18-39803674-1	chr18	39803574	39803774	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30177.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	2.42	1.76	2.28	2.01	1.64	5.64	2.33	4.18	3.54	11.55	5.53	0.31
Merged-chr11-26354373-1	chr11	26354273	26354473	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-32711.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0.0	2.52	7.99	4.02	2.45	5.33	2.66	3.87	8.65	1.0	7.03	2.82
Merged-chr2-157514339-1	chr2	157514239	157514439	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45739.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	5.65	1.51	0.0	3.22	5.32	4.08	1.66	3.79	9.24	3.01	4.52	2.51
Merged-chr5-114372235-1	chr5	114372135	114372335	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159941, intron 2 of 6)	intron (NM_001159941, intron 2 of 6)	8270.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	9.29	7.8	4.56	1.61	2.86	3.14	7.64	2.52	2.56	2.01	0.0	0.63
Merged-chr8-84704558-1	chr8	84704458	84704658	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001081981)	TTS (NM_001081981)	3101.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	5.25	6.04	2.28	4.83	4.09	5.96	5.31	4.01	1.77	1.0	2.51	1.88
Merged-chr11-87358970-2	chr11	87358882	87359082	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177167)	promoter-TSS (NM_177167)	12.0	NM_177167	320472.0	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	5.65	5.28	3.42	1.61	6.95	6.59	4.98	5.75	8.85	4.52	5.02	5.64
Merged-chr10-43578521-1	chr10	43578421	43578621	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009846)	promoter-TSS (NM_009846)	-648.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	2.83	6.79	1.71	8.45	1.23	2.2	6.98	0.84	3.54	2.01	6.03	3.45
Merged-chr4-149856540-1	chr4	149856440	149856640	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82273.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.42	6.79	3.99	1.61	2.86	4.39	3.65	5.52	6.29	3.51	4.02	2.51
Merged-chr4-156183950-1	chr4	156183850	156184050	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021604, intron 3 of 35)	intron (NM_021604, intron 3 of 35)	13538.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	7.67	2.01	5.7	1.61	2.45	7.84	2.33	4.63	3.34	5.52	5.02	1.88
Merged-chr4-138028126-1	chr4	138028026	138028226	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	30301.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.21	7.29	3.99	5.63	9.41	8.15	6.98	4.77	2.36	0.0	1.51	0.0
Merged-chr11-29715796-1	chr11	29715696	29715896	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-2767.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	2.42	0.75	1.14	0.0	5.32	5.02	3.32	7.37	0.39	0.0	0.0	1.25
Merged-chr19-32758523-1	chr19	32758423	32758623	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008960, exon 1 of 9)	exon (NM_008960, exon 1 of 9)	946.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.42	3.77	1.71	6.03	3.68	5.64	2.66	2.94	7.87	7.03	2.51	3.45
Merged-chr4-149958831-1	chr4	149958731	149958931	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3825.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	5.65	2.26	0.0	0.8	6.14	5.02	1.99	2.75	5.11	9.04	1.51	2.51
Merged-chr14-60765289-1	chr14	60765189	60765389	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001310594)	TTS (NM_001310594)	-2845.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	2.02	5.53	1.14	3.22	4.91	13.17	1.99	4.21	5.11	8.54	7.54	4.39
Merged-chr15-38248097-2	chr15	38247996	38248196	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28893.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	4.85	7.8	2.85	10.05	6.55	10.03	2.66	2.66	8.85	12.05	14.57	3.13
Merged-chr11-121753198-1	chr11	121753098	121753298	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	50771.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	1.21	1.01	1.14	2.41	4.5	3.76	1.0	6.45	4.33	0.0	6.03	4.07
Merged-chr7-102333861-1	chr7	102333761	102333961	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	RMER6A|LTR|ERVK	66037.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	4.44	0.75	3.99	5.63	6.55	5.64	2.66	4.04	3.93	3.01	2.01	1.88
Merged-chr14-76332368-1	chr14	76332268	76332468	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80906.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	4.44	1.51	1.14	3.22	0.82	3.76	1.66	4.01	8.65	1.0	8.54	4.7
Merged-chr5-64865439-1	chr5	64865339	64865539	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61916.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	8.48	4.28	7.42	8.85	7.77	3.14	3.99	3.39	3.93	3.01	5.53	4.7
Merged-chr3-13866508-1	chr3	13866408	13866608	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 2 of 7)	intron (NM_001357034, intron 2 of 7)	-79797.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	4.85	5.03	0.57	3.22	3.27	4.39	1.99	5.27	3.74	9.04	5.53	5.33
Merged-chr3-104501823-1	chr3	104501723	104501923	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025067, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	10095.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	1.62	3.52	10.84	8.85	0.82	2.51	3.65	3.17	8.06	7.53	7.03	6.89
Merged-chr12-79912492-1	chr12	79912392	79912592	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12241.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	1.26	5.13	12.07	3.27	4.7	4.65	8.83	4.72	5.02	6.53	6.89
Merged-chr4-128858438-1	chr4	128858338	128858538	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25702.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	1.21	4.02	3.42	0.8	4.5	5.96	1.0	3.79	5.51	6.53	5.53	4.07
Merged-chr14-75189612-1	chr14	75189512	75189712	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	L1MA8|LINE|L1	-52675.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	4.44	6.54	8.56	4.02	4.5	4.39	3.99	4.37	8.85	11.55	3.01	1.88
Merged-chr11-98742797-1	chr11	98742697	98742897	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	1012.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	2.02	5.03	3.42	4.02	4.91	7.53	8.3	3.14	2.36	4.02	3.01	5.01
Merged-chr1-66861306-1	chr1	66861206	66861406	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	2003.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.4	0.25	2.85	4.02	4.09	5.33	4.98	10.93	6.29	6.53	9.55	10.65
Merged-chr11-120344875-1	chr11	120344775	120344975	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001313923)	TTS (NM_001313923)	2538.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	5.65	5.28	14.83	4.83	6.55	4.08	2.99	0.7	9.83	3.51	3.52	5.64
Merged-chr14-26644200-1	chr14	26644100	26644300	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	6066.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	7.67	6.79	1.14	3.22	2.45	3.45	2.99	1.29	4.33	4.02	4.02	2.51
Merged-chr6-88522826-1	chr6	88522726	88522926	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4026.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	2.42	0.5	1.14	0.8	4.91	6.9	4.65	4.32	4.72	6.53	3.01	5.33
Merged-chr7-97331297-1	chr7	97331197	97331397	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1026.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	3.63	5.03	2.28	3.22	4.5	5.96	7.97	3.93	3.34	4.52	5.02	4.39
Merged-chr6-42612493-1	chr6	42612393	42612593	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15121.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	2.02	2.52	0.0	4.02	6.55	2.51	0.0	4.15	0.0	0.0	2.51	0.63
Merged-chr7-90137834-1	chr7	90137734	90137934	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	L1Md_F2|LINE|L1	7621.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.81	5.28	7.99	3.22	5.73	5.02	6.31	1.46	1.97	4.02	3.01	1.88
Merged-chr12-79534402-1	chr12	79534302	79534502	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	237051.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.23	6.04	2.28	2.01	8.59	7.21	2.99	2.86	1.97	5.52	4.02	0.31
Merged-chr16-92089420-1	chr16	92089320	92089520	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080456, intron 1 of 2)	intron (NM_080456, intron 1 of 2)	31084.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	7.67	6.04	2.28	2.01	2.86	12.23	2.33	4.21	0.2	2.01	2.01	0.94
Merged-chr19-37176054-1	chr19	37175954	37176154	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290826)	promoter-TSS (NM_001290826)	9.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	9.29	7.55	2.28	2.41	3.68	2.82	1.66	5.27	5.51	4.02	11.56	1.57
Merged-chr4-152491482-1	chr4	152491382	152491582	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355739, intron 3 of 29)	intron (NM_001355739, intron 3 of 29)	13340.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	2.42	4.28	3.42	0.0	0.41	6.59	3.65	2.19	3.74	4.02	6.03	6.27
Merged-chr1-183508043-1	chr1	183507943	183508143	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88795.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	1.62	2.77	2.85	1.21	3.68	4.08	6.31	4.23	3.15	2.01	1.51	2.51
Merged-chrX-18188363-1	chrX	18188263	18188463	+	559.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310444, intron 2 of 28)	intron (NM_001310444, intron 2 of 28)	25788.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	8.08	8.3	3.42	3.62	6.14	7.53	8.3	5.27	8.06	6.53	6.53	4.39
Merged-chr7-101998676-1	chr7	101998576	101998776	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	19479.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	1.62	3.02	0.57	8.45	4.91	5.02	1.99	4.01	6.88	8.54	9.55	2.19
Merged-chr12-17717346-1	chr12	17717246	17717446	+	559.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	26537.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.4	2.52	0.0	1.21	2.86	0.94	2.66	2.66	3.34	5.02	5.53	4.7
Merged-chr9-115710204-2	chr9	115710114	115710314	+	559.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-199241.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	8.08	1.76	10.27	11.26	10.64	5.96	2.99	4.29	7.47	6.53	5.02	7.21
Merged-chr5-137858547-1	chr5	137858447	137858647	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-498.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	5.25	1.76	9.7	1.61	9.0	6.27	2.33	5.07	5.51	2.51	4.02	6.58
Merged-chr5-64861094-1	chr5	64860994	64861194	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57571.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.23	4.02	6.85	3.62	1.23	5.02	4.32	4.46	7.47	10.54	5.02	3.13
Merged-chr2-91091942-1	chr2	91091842	91092042	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4736.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	2.02	7.55	9.13	0.8	3.27	4.7	5.65	4.77	8.26	1.51	8.04	1.25
Merged-chr19-46505813-1	chr19	46505713	46505913	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4165.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.44	4.53	2.85	0.8	4.91	6.59	2.33	3.9	2.56	4.02	2.01	5.33
Merged-chr12-100194359-2	chr12	100194259	100194459	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045282)	TTS (NR_045282)	-5076.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	1.21	6.79	1.14	2.41	4.91	5.64	5.98	5.58	8.46	2.01	8.54	4.7
Merged-chr15-55550945-3	chr15	55550842	55551042	+	559.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	6370.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	4.04	5.53	6.85	1.21	4.09	5.64	6.98	4.15	9.83	7.03	6.53	6.27
Merged-chr7-108967135-2	chr7	108967017	108967217	+	559.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32702.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	6.06	7.04	7.99	4.02	8.18	3.45	6.31	5.07	4.33	5.02	12.56	4.7
Merged-chr10-120234187-1	chr10	120234087	120234287	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7127.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	2.02	1.51	4.56	0.8	0.0	0.31	1.33	1.4	13.77	4.02	10.05	7.21
Merged-chr6-31077004-1	chr6	31076904	31077104	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13911.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	4.04	2.77	0.0	4.02	4.5	5.64	3.32	3.34	3.74	3.01	5.02	4.07
Merged-chr10-80368008-1	chr10	80367908	80368108	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	1629.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	1.62	3.52	1.14	0.0	2.45	4.39	6.64	5.13	1.97	2.01	1.0	2.19
Merged-chr11-75538039-1	chr11	75537939	75538139	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	5927.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	4.04	2.01	6.85	7.64	14.73	7.21	4.32	3.98	5.11	6.53	9.04	2.51
Merged-chr9-90254327-1	chr9	90254227	90254427	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	B4|SINE|B4	16442.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.63	9.31	6.28	3.22	2.86	6.59	7.64	3.2	8.06	1.0	4.52	4.07
Merged-chr13-62627238-1	chr13	62627138	62627338	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3056.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	7.27	3.02	6.85	4.83	2.86	5.64	2.66	4.88	7.08	2.01	3.52	0.63
Merged-chrX-42176376-1	chrX	42176276	42176476	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	PB1D10|SINE|Alu	25675.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	4.85	0.0	1.14	0.0	6.14	5.02	5.98	4.99	5.9	2.01	4.02	4.39
Merged-chr18-38441817-1	chr18	38441717	38441917	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	22910.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	5.03	2.85	4.83	4.09	5.64	4.98	4.85	4.92	9.54	3.52	5.33
Merged-chr12-84567796-1	chr12	84567696	84567896	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-2032.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	3.23	5.53	5.7	3.22	1.64	8.15	3.32	5.36	5.11	2.51	3.01	1.57
Merged-chr8-90856578-1	chr8	90856478	90856678	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	27743.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.81	1.01	0.0	0.8	7.36	3.76	1.99	3.34	0.0	1.0	1.51	2.19
Merged-chrX-136744877-1	chrX	136744777	136744977	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033324, intron 1 of 9)	intron (NR_033324, intron 1 of 9)	-1191.0	NM_001168228	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	6.46	2.52	0.57	1.61	5.32	5.02	3.32	9.5	2.36	6.03	3.01	1.57
Merged-chr3-148727081-1	chr3	148726981	148727181	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	227554.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.62	5.53	4.56	2.01	4.09	5.02	2.66	7.26	0.39	0.0	0.5	1.25
Merged-chr5-30625114-1	chr5	30625014	30625214	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010608, exon 2 of 2)	3' UTR (NM_010608, exon 2 of 2)	-22822.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	2.83	2.52	2.28	6.03	2.86	1.25	3.32	4.74	2.16	1.0	3.01	5.01
Merged-chr14-46872816-1	chr14	46872716	46872916	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10149.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.62	1.51	0.0	1.61	0.82	4.08	0.66	2.58	5.51	11.55	10.05	7.52
Merged-chr16-92824754-1	chr16	92824654	92824854	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	1320.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.4	1.01	9.7	2.82	2.86	8.78	6.64	3.81	6.49	3.51	3.52	5.33
Merged-chr12-51868951-1	chr12	51868851	51869051	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	-39415.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	1.21	2.52	4.56	3.62	4.09	5.33	2.66	3.81	0.0	0.0	0.0	0.63
Merged-chr13-97436087-1	chr13	97435987	97436187	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	1117.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	2.83	3.27	3.42	4.83	2.05	5.96	3.32	3.14	1.18	2.51	5.02	2.51
Merged-chr8-122763578-1	chr8	122763478	122763678	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	-817.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	3.23	7.55	9.7	4.02	4.91	1.57	10.63	3.0	4.72	6.53	10.55	6.58
Merged-chr2-165779132-1	chr2	165779032	165779232	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79041.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.65	7.55	4.56	7.24	6.95	5.96	5.31	3.84	4.72	8.54	7.03	7.21
Merged-chr1-119534604-1	chr1	119534504	119534704	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126486, intron 3 of 3)	MTD|LTR|ERVL-MaLR	1561.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	5.65	1.01	1.71	7.24	8.18	3.76	2.99	6.39	2.75	4.02	6.53	7.21
Merged-chr2-74673108-1	chr2	74673008	74673208	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_008274	15432.0	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	4.44	7.04	2.28	6.03	3.68	8.78	8.64	5.33	5.7	8.03	2.01	9.4
Merged-chr13-64257167-1	chr13	64257067	64257267	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	8467.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.0	0.0	0.0	0.0	3.68	4.08	4.65	3.87	0.59	0.5	0.0	2.82
Merged-chr8-120312602-1	chr8	120312502	120312702	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84372.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	4.04	2.01	1.14	4.02	1.64	5.33	0.0	3.79	3.74	2.01	1.51	1.25
Merged-chr1-88600251-1	chr1	88600151	88600351	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48734.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.81	4.28	9.13	2.01	2.05	4.7	2.99	4.54	7.28	2.51	5.02	3.45
Merged-chr6-58594593-1	chr6	58594493	58594693	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-2079.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	2.42	2.01	4.56	0.8	6.14	5.02	3.99	1.99	3.34	4.52	3.52	3.13
Merged-chr2-73279129-1	chr2	73279029	73279229	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7203.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	4.85	4.78	5.7	4.02	5.73	2.51	2.66	3.2	1.57	1.0	2.51	2.51
Merged-chr13-12469765-1	chr13	12469665	12469865	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8027.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	3.23	4.53	0.0	2.41	3.68	4.39	4.32	3.7	5.51	4.52	5.53	3.13
Merged-chr19-3706391-2	chr19	3706292	3706492	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1901.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	3.63	2.77	3.99	3.22	12.68	6.59	3.99	3.11	10.62	6.53	9.04	1.25
Merged-chr19-55839261-1	chr19	55839161	55839361	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-56060.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.44	3.02	0.57	8.04	3.68	8.78	5.65	3.9	4.13	11.55	3.52	7.83
Merged-chr5-121398715-1	chr5	121398615	121398815	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	733.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	2.83	6.54	0.0	0.0	3.27	2.51	1.0	0.98	6.88	4.02	3.52	9.71
Merged-chr2-164047455-1	chr2	164047355	164047555	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001114079, intron 11 of 13)	intron (NM_001114079, intron 11 of 13)	22231.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	4.44	6.29	1.14	4.02	6.14	2.82	2.99	2.24	4.13	4.02	8.54	2.19
Merged-chr15-33183572-1	chr15	33183472	33183672	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	MIRb|SINE|MIR	100443.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.81	2.01	0.0	4.42	2.86	0.63	4.65	2.21	6.29	3.51	1.51	5.64
Merged-chr2-167978420-1	chr2	167978320	167978520	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011201, exon 9 of 9)	3' UTR (NM_011201, exon 9 of 9)	32173.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	1.21	1.51	2.28	4.02	1.64	4.08	7.64	4.15	2.75	3.51	1.51	3.76
Merged-chr2-181239613-1	chr2	181239513	181239713	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183162, exon 3 of 19)	exon (NM_183162, exon 3 of 19)	2414.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	2.42	3.02	1.71	2.82	2.05	5.64	3.99	3.2	6.69	5.02	7.54	5.33
Merged-chr10-127545446-2	chr10	127545439	127545639	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008512, exon 75 of 89)	exon (NM_008512, exon 75 of 89)	-10980.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.63	3.27	2.85	2.41	1.23	0.31	2.33	2.47	3.54	4.52	4.02	2.19
Merged-chr15-87071210-1	chr15	87071110	87071310	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-473089.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.42	0.25	1.14	3.62	1.23	3.45	4.32	4.15	1.18	2.51	5.53	2.82
Merged-chr5-122268741-1	chr5	122268641	122268841	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4281.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	4.44	4.53	6.85	2.41	7.77	3.76	3.99	5.1	3.15	0.0	7.03	5.33
Merged-chr16-92865114-1	chr16	92865014	92865214	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39040.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.4	1.01	3.99	0.0	3.27	0.63	2.66	0.67	5.7	6.53	3.01	6.89
Merged-chr14-17773062-1	chr14	17772962	17773162	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	112102.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.83	2.26	8.56	6.44	1.64	4.08	4.32	4.46	2.36	1.51	4.02	5.33
Merged-chr4-130738727-2	chr4	130738640	130738840	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356564, intron 7 of 20)	intron (NM_001356564, intron 7 of 20)	-10898.0	NR_028565	100217460.0		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	3.23	6.04	3.99	3.22	1.23	5.96	4.32	4.82	8.46	12.55	10.05	4.7
Merged-chr3-87090128-1	chr3	87090028	87090228	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170985, intron 6 of 15)	intron (NM_001170985, intron 6 of 15)	84619.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	4.44	3.27	1.14	6.44	6.55	4.7	1.33	4.82	4.52	6.03	2.51	9.71
Merged-chr8-120490937-1	chr8	120490837	120491037	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2071.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	14.54	3.27	7.99	1.61	9.41	9.41	5.31	4.96	15.54	3.51	6.03	5.01
Merged-chr9-124257605-1	chr9	124257505	124257705	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55089.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	4.44	5.03	8.56	3.62	3.27	3.45	4.65	10.68	7.28	10.04	7.03	7.83
Merged-chr17-50285083-1	chr17	50284983	50285183	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010021, intron 7 of 10)	intron (NM_010021, intron 7 of 10)	8537.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.04	1.01	4.56	0.8	2.45	3.76	5.98	4.4	3.74	1.0	2.01	1.57
Merged-chr2-13526416-1	chr2	13526316	13526516	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010067, intron 2 of 10)	intron (NM_010067, intron 2 of 10)	18248.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	3.63	3.52	2.28	2.41	4.09	0.63	3.99	4.82	2.16	1.51	2.01	4.7
Merged-chr17-53478264-1	chr17	53478164	53478364	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-970.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.81	2.52	4.56	4.02	4.5	6.59	0.66	3.11	1.57	2.01	3.52	5.33
Merged-chr14-70776136-1	chr14	70776036	70776236	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010071, intron 3 of 4)	intron (NM_010071, intron 3 of 4)	1755.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	1.62	3.52	5.13	1.61	6.14	5.96	7.64	3.98	3.15	5.02	1.51	3.13
Merged-chr16-15954564-1	chr16	15954464	15954664	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	67278.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.04	3.02	5.7	1.61	0.82	0.94	4.98	5.86	3.54	6.53	5.02	2.51
Merged-chr4-26248387-1	chr4	26248287	26248487	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	98265.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	1.01	1.14	0.8	4.91	3.14	3.32	5.47	4.33	1.0	7.54	2.82
Merged-chr6-129682939-1	chr6	129682839	129683039	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3966.0	NM_010652	16641.0	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	0.81	1.01	3.42	8.85	4.09	1.25	4.65	3.73	6.88	10.04	4.52	5.95
Merged-chrX-57304278-1	chrX	57304178	57304378	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358573, intron 2 of 20)	intron (NM_001358573, intron 2 of 20)	22323.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	8.88	5.28	5.7	2.41	0.82	5.33	2.99	3.31	4.92	2.51	4.02	2.82
Merged-chr1-119929952-1	chr1	119929852	119930052	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001115074, intron 20 of 22)	intron (NM_001115074, intron 20 of 22)	-16784.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	2.02	4.53	1.71	1.61	8.59	2.82	2.66	5.5	1.77	3.51	5.02	2.51
Merged-chr17-35269995-1	chr17	35269895	35270095	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER21A|LTR|ERV1	6872.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	8.88	18.36	9.7	3.22	6.95	10.35	2.66	2.07	7.47	4.02	4.02	5.01
Merged-chr1-57983610-1	chr1	57983510	57983710	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-1730.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	1.62	1.51	1.14	0.0	4.09	9.72	7.31	4.57	3.34	0.5	1.51	4.39
Merged-chrX-142682545-1	chrX	142682445	142682645	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152447, exon 2 of 9)	non-coding (NR_152447, exon 2 of 9)	819.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	6.86	1.26	2.28	3.22	7.36	5.64	5.65	3.5	7.67	12.55	4.52	5.64
Merged-chr12-73965143-1	chr12	73965043	73965243	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	613.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	2.42	2.52	1.71	2.41	0.82	3.45	1.0	4.57	5.9	8.03	3.52	5.95
Merged-chr7-93093933-1	chr7	93093833	93094033	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14054.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	4.44	4.53	3.99	4.42	4.5	5.33	2.99	2.78	1.57	3.51	5.53	1.88
Merged-chr15-35464701-1	chr15	35464601	35464801	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 16 of 61)	ORR1D2|LTR|ERVL-MaLR	93155.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.0	0.0	0.0	0.0	2.05	1.88	5.31	5.5	0.79	1.0	4.52	2.19
Merged-chr11-96124394-1	chr11	96124294	96124494	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-9392.0	NM_172799	237930.0	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	7.67	7.55	5.13	0.8	0.82	4.08	0.66	1.29	4.33	2.51	1.51	2.82
Merged-chr10-43478705-1	chr10	43478605	43478805	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	-435.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	2.02	8.55	8.56	7.24	0.82	3.14	4.98	3.84	7.28	4.02	9.04	6.27
Merged-chr1-136573677-1	chr1	136573577	136573777	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51224.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.44	2.77	9.13	9.65	3.68	5.02	4.65	3.73	4.92	2.51	18.09	6.58
Merged-chr3-115799766-1	chr3	115799666	115799866	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-84711.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.5	0.0	0.8	2.86	3.14	6.98	4.46	2.56	1.0	2.01	0.31
Merged-chr7-104287905-1	chr7	104287805	104288005	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310602, intron 1 of 7)	intron (NM_001310602, intron 1 of 7)	201.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	7.28	16.57	11.56	6.58
Merged-chr15-64174691-2	chr15	64174590	64174790	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-114242.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.46	1.51	3.42	1.61	4.5	5.96	5.31	8.47	12.0	14.06	7.54	5.01
Merged-chr11-6393024-1	chr11	6392924	6393124	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-2101.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	4.85	0.0	2.28	1.61	1.23	5.64	0.66	2.33	3.15	2.51	3.52	1.88
Merged-chrX-71311435-1	chrX	71311335	71311535	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 15 of 15)	intron (NM_001358113, intron 15 of 15)	-53325.0	NM_001313702	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	6.46	6.04	2.28	2.01	6.14	3.14	1.99	7.43	11.21	9.04	6.53	3.45
Merged-chr4-103122800-1	chr4	103122700	103122900	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3410.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	8.08	2.77	5.13	5.23	4.09	4.08	4.65	5.02	8.06	7.03	4.02	6.27
Merged-chr8-46140072-1	chr8	46139972	46140172	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15926.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.25	4.02	10.84	6.03	11.05	7.53	3.99	9.08	6.88	4.52	5.02	10.02
Merged-chrX-152002565-1	chrX	152002465	152002665	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016763, intron 2 of 5)	RSINE1|SINE|B4	669.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	2.02	3.52	0.0	6.84	6.14	5.02	3.99	4.15	6.88	3.51	2.01	4.7
Merged-chrX-170674777-1	chrX	170674677	170674877	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001308488, intron 3 of 7)	CpG-16010	2133.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	2.83	6.54	7.99	1.61	7.36	2.51	3.32	5.94	5.11	6.53	6.03	3.45
Merged-chr16-22123858-1	chr16	22123758	22123958	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	39441.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	9.29	1.76	5.13	3.22	1.23	4.39	0.66	4.79	3.34	4.02	6.03	4.39
Merged-chr7-100009836-1	chr7	100009736	100009936	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001291320)	promoter-TSS (NM_001291320)	-82.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	7.27	4.02	1.71	0.8	2.45	5.02	2.66	2.66	6.49	1.0	9.04	5.64
Merged-chr6-126955911-1	chr6	126955811	126956011	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138594, exon 9 of 14)	exon (NM_138594, exon 9 of 14)	15945.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	6.06	2.77	1.71	4.42	4.09	5.02	5.65	4.57	13.96	5.02	11.05	4.39
Merged-chr7-100862017-1	chr7	100861917	100862117	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1396.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.81	1.76	1.14	4.02	0.82	1.57	1.66	1.18	3.34	10.54	5.02	2.19
Merged-chr17-56077684-1	chr17	56077584	56077784	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024432, intron 1 of 11)	B2_Mm1t|SINE|B2	1649.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	6.06	2.26	3.42	1.61	3.27	3.45	1.66	2.58	5.31	7.53	5.53	10.96
Merged-chr13-76199203-1	chr13	76199103	76199303	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	100469.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0.0	2.26	0.0	1.61	0.0	4.7	1.99	5.21	0.2	0.5	0.0	0.94
Merged-chr7-16922896-1	chr7	16922796	16922996	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	1136.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	1.62	1.76	3.99	0.0	0.82	1.25	0.0	4.46	2.95	6.03	3.01	4.39
Merged-chr1-96872052-1	chr1	96871952	96872152	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172658, exon 1 of 13)	exon (NM_172658, exon 1 of 13)	119.0	NM_172658	227394.0	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	2.02	0.5	0.0	0.8	0.0	0.31	4.65	1.49	0.79	2.01	1.51	0.94
Merged-chr2-143903689-1	chr2	143903589	143903789	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11642.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	4.44	2.52	1.71	2.01	2.05	4.39	2.66	3.56	1.77	4.52	5.02	2.82
Merged-chr14-30589872-1	chr14	30589772	30589972	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17723.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	4.85	0.25	2.28	0.8	0.41	5.02	2.33	2.1	7.47	16.07	6.53	8.46
Merged-chr1-75425894-1	chr1	75425794	75425994	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085370, intron 29 of 38)	intron (NM_001085370, intron 29 of 38)	-10042.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	2.42	1.01	1.14	1.61	6.14	3.14	4.65	4.21	4.72	5.52	0.0	2.82
Merged-chr11-64063012-1	chr11	64062912	64063112	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	16460.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	3.23	5.28	6.85	5.23	1.64	0.0	0.33	0.0	9.05	3.01	11.05	3.13
Merged-chr16-70868456-1	chr16	70868356	70868556	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	252031.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	1.62	1.76	3.99	1.61	2.45	3.14	3.99	3.73	1.57	2.51	4.52	2.19
Merged-chr11-88869650-1	chr11	88869550	88869750	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	-5064.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	8.08	4.28	4.56	4.83	4.09	2.51	1.99	5.16	9.64	6.53	14.07	6.89
Merged-chr5-44284580-1	chr5	44284480	44284680	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57974.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	8.88	5.28	1.14	6.03	4.5	4.08	3.32	5.44	6.1	1.51	5.02	5.64
Merged-chr4-33124666-1	chr4	33124566	33124766	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7890.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.0	6.79	1.14	3.22	3.68	3.45	1.33	5.92	1.97	3.51	6.53	4.7
Merged-chr9-63844305-1	chr9	63844205	63844405	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86311.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.86	1.26	0.57	0.0	2.45	5.02	1.99	4.12	3.74	4.52	1.51	2.51
Merged-chr16-15984322-1	chr16	15984222	15984422	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97036.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.81	5.53	4.56	1.21	1.23	0.63	0.66	2.13	5.31	8.54	9.04	1.57
Merged-chr2-25694829-1	chr2	25694729	25694929	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5245.0	NM_153558	227627.0	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	5.25	2.77	3.99	0.8	1.23	5.02	1.0	3.36	5.9	3.51	2.01	3.13
Merged-chr2-68860589-1	chr2	68860489	68860689	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-852.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.85	3.77	4.56	1.61	10.64	8.78	3.32	8.8	9.24	7.03	9.55	7.83
Merged-chr2-72038407-1	chr2	72038307	72038507	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204167, intron 3 of 5)	intron (NM_001204167, intron 3 of 5)	-16210.0	NM_001355478	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	6.46	1.51	3.42	0.8	6.14	4.08	5.98	3.79	5.9	6.53	6.03	4.07
Merged-chr19-47142664-1	chr19	47142564	47142764	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081271, intron 1 of 1)	MER102b|DNA|hAT-Charlie	1510.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	0.4	0.75	0.0	0.0	5.32	0.63	0.0	2.24	10.82	12.55	4.02	2.19
Merged-chr12-79133123-1	chr12	79133023	79133223	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	2335.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	1.21	0.5	0.0	0.4	3.27	1.25	1.0	0.79	0.98	0.0	2.51	0.31
Merged-chr6-122739645-1	chr6	122739545	122739745	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011401, intron 3 of 9)	intron (NM_011401, intron 3 of 9)	3100.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	5.25	10.56	8.56	4.42	11.05	6.27	9.3	3.45	5.9	4.52	8.04	3.13
Merged-chr4-59267491-1	chr4	59267391	59267591	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105031, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	7440.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	4.85	2.52	2.28	4.02	6.55	5.33	2.33	6.73	8.06	6.53	7.54	2.19
Merged-chr11-119503874-1	chr11	119503774	119503974	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164636, intron 7 of 8)	intron (NM_001164636, intron 7 of 8)	12254.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	10.5	2.77	2.85	0.8	4.09	3.45	1.99	2.44	9.24	9.04	6.03	6.89
Merged-chr19-47089835-1	chr19	47089735	47089935	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	790.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	1.62	5.28	7.99	1.21	3.27	4.39	1.66	5.27	2.95	6.03	6.53	7.21
Merged-chr5-21379057-2	chr5	21378968	21379168	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008013)	TTS (NM_008013)	6395.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.23	6.54	11.41	4.42	5.73	5.02	4.65	3.31	11.21	2.51	4.52	5.01
Merged-chr4-53355187-1	chr4	53355087	53355287	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-84955.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	10.09	6.04	2.85	3.22	4.09	2.2	2.66	5.1	5.7	3.01	10.55	1.88
Merged-chr8-105564054-1	chr8	105563954	105564154	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	2010.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	7.27	1.76	4.56	4.42	2.45	7.21	4.65	4.35	7.67	2.01	6.53	4.39
Merged-chr4-59497990-1	chr4	59497890	59498090	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144904, intron 6 of 14)	ORR1D1-int|LTR|ERVL-MaLR	51374.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	1.01	2.28	0.0	4.09	0.63	6.64	6.14	0.0	1.0	0.5	2.51
Merged-chr7-99095384-1	chr7	99095284	99095484	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	B3|SINE|B2	45760.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.27	4.02	0.57	0.4	5.32	4.7	3.32	2.05	9.24	8.54	11.56	2.82
Merged-chr1-166169240-1	chr1	166169140	166169340	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39019.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.04	1.76	2.28	0.0	3.27	5.02	8.97	4.71	4.13	10.54	3.01	0.94
Merged-chr11-109244772-2	chr11	109244655	109244855	+	558.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165934, intron 13 of 16)	intron (NM_001165934, intron 13 of 16)	53426.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	6.86	6.54	5.7	8.45	6.95	5.33	2.33	3.59	9.24	8.03	13.06	10.65
Merged-chr4-41714401-1	chr4	41714301	41714501	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-884.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	2.02	3.52	4.56	8.45	2.86	5.96	5.65	3.22	6.29	3.01	7.54	2.51
Merged-chr8-8483137-1	chr8	8483037	8483237	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	177636.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.25	0.0	0.8	0.41	6.27	5.31	4.57	2.16	1.0	2.01	0.94
Merged-chr5-139466507-1	chr5	139466407	139466607	+	558.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-5973.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.81	4.02	11.41	0.8	4.91	3.76	3.32	2.38	7.28	4.52	9.04	6.89
Merged-chr7-27332433-1	chr7	27332333	27332533	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1215.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	6.86	1.51	2.28	3.62	10.64	5.02	4.98	4.85	4.72	5.52	9.55	7.52
Merged-chr13-21715711-2	chr13	21715618	21715818	+	558.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	425.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	5.25	6.04	1.14	7.24	4.5	5.64	1.33	2.83	8.46	6.53	11.56	8.14
Merged-chr17-45548849-2	chr17	45548766	45548966	+	558.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013749, intron 1 of 2)	intron (NM_001013749, intron 1 of 2)	811.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	6.46	6.04	1.14	1.61	2.45	5.33	1.0	3.67	7.67	2.51	5.53	3.45
Merged-chr15-74897824-1	chr15	74897724	74897924	+	558.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16120.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	3.23	2.26	7.99	0.0	0.82	1.25	0.0	0.11	8.26	4.52	15.07	5.95
Merged-chr11-117331764-2	chr11	117331622	117331822	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	7.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.23	1.76	0.0	6.03	7.36	3.14	2.66	2.78	2.95	4.52	9.04	3.13
Merged-chr19-41291276-1	chr19	41291176	41291376	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 13 of 16)	L2|LINE|L2	-27272.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	3.52	2.28	4.02	5.73	1.88	4.65	3.34	1.18	5.52	5.53	2.51
Merged-chr16-85281883-1	chr16	85281783	85281983	+	558.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108176.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.65	2.52	5.7	6.03	0.0	0.0	0.0	0.0	8.26	8.03	11.05	2.19
Merged-chr10-21159893-1	chr10	21159793	21159993	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198914, intron 1 of 15)	CpG	1091.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.0	2.52	9.13	6.44	10.23	5.96	5.31	5.27	3.15	3.51	4.02	3.45
Merged-chr4-108519023-2	chr4	108518919	108519119	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 15 of 30)	ORR1F|LTR|ERVL-MaLR	59593.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	9.69	3.77	6.28	4.02	11.45	7.53	3.99	4.29	8.85	1.51	11.56	9.71
Merged-chr9-45264389-1	chr9	45264289	45264489	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008348, exon 5 of 7)	exon (NM_008348, exon 5 of 7)	2318.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	6.46	7.29	0.0	2.41	6.14	6.59	5.65	2.38	3.54	5.52	3.01	0.31
Merged-chr11-77802282-1	chr11	77802182	77802382	+	558.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	984.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.65	4.78	0.0	2.41	6.14	4.7	4.98	5.1	5.31	3.01	5.53	1.25
Merged-chr2-155765188-1	chr2	155765088	155765288	+	558.200012	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10154.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	7.27	6.54	7.99	9.65	6.95	12.86	3.65	7.04	6.88	8.03	7.54	6.89
Merged-chr1-151011152-1	chr1	151011052	151011252	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17717.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	1.62	4.53	4.56	1.61	1.64	7.21	4.98	4.12	2.36	4.02	6.53	3.76
Merged-chr2-145858625-1	chr2	145858525	145858725	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44616.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.4	1.51	3.99	0.8	3.68	4.7	5.98	4.04	1.77	2.51	3.01	0.31
Merged-chr8-120078304-1	chr8	120078204	120078404	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23168.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	6.46	5.03	6.85	3.62	4.5	5.02	4.65	4.77	2.95	4.52	14.07	2.82
Merged-chr11-99150116-1	chr11	99150016	99150216	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4961.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	2.42	4.78	7.99	4.02	5.73	9.72	2.99	4.82	10.62	8.54	4.52	1.57
Merged-chr4-119292650-1	chr4	119292550	119292750	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1863.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	5.25	3.52	0.0	1.61	0.41	8.15	7.64	3.53	1.18	2.01	2.01	5.95
Merged-chr7-113186624-1	chr7	113186524	113186724	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20841.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	1.62	1.76	0.0	0.8	2.86	8.47	2.66	3.5	1.18	3.01	0.0	1.57
Merged-chr10-20348608-1	chr10	20348508	20348708	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027930, intron 2 of 6)	intron (NM_027930, intron 2 of 6)	789.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	4.44	3.52	2.28	5.23	2.05	6.9	4.98	1.63	6.49	10.54	9.55	14.1
Merged-chr9-109908315-1	chr9	109908215	109908415	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18672.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	3.23	3.52	8.56	1.61	2.86	9.09	7.31	2.36	5.51	4.02	4.52	5.01
Merged-chr14-45566715-2	chr14	45566636	45566836	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	23026.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	5.25	5.28	0.57	4.83	2.86	6.9	3.99	9.06	7.28	3.51	10.55	9.08
Merged-chr10-96625320-1	chr10	96625220	96625420	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8319.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.25	8.3	6.85	3.22	6.14	11.29	0.66	2.47	2.16	6.53	4.52	4.07
Merged-chrX-142966068-1	chrX	142965968	142966168	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019496, intron 1 of 5)	CpG	660.0	NM_019496	56068.0	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	2.02	3.77	3.99	3.22	5.73	1.57	0.66	3.28	4.33	2.01	5.53	8.14
Merged-chr1-106717392-2	chr1	106717289	106717489	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3099.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	3.63	5.53	0.57	6.44	1.23	7.21	7.97	6.79	10.42	3.01	5.53	6.89
Merged-chr5-64919011-1	chr5	64918911	64919111	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13688.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.23	3.52	2.85	2.41	8.59	4.39	5.98	3.53	11.41	9.04	4.52	4.39
Merged-chr2-137577361-1	chr2	137577261	137577461	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-460841.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.83	1.51	0.0	2.82	6.14	3.14	0.66	6.67	2.95	2.01	5.02	3.13
Merged-chr4-9844218-1	chr4	9844118	9844318	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013526)	promoter-TSS (NM_013526)	-154.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	10.9	6.29	11.41	1.61	0.41	0.94	5.31	1.54	3.74	2.01	2.01	3.76
Merged-chr11-118157977-1	chr11	118157877	118158077	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28758.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.25	0.75	2.85	0.0	2.86	5.33	5.31	1.12	3.54	2.01	0.5	1.25
Merged-chr9-64018188-1	chr9	64018088	64018288	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3871.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.04	2.01	3.42	3.22	5.32	2.51	7.64	3.9	5.7	2.51	6.53	2.51
Merged-chr11-107471431-1	chr11	107471331	107471531	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-711.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	2.83	4.28	2.28	0.4	5.32	0.94	3.65	5.13	6.49	4.02	1.51	8.46
Merged-chr1-171270882-1	chr1	171270782	171270982	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020579, intron 1 of 7)	intron (NM_020579, intron 1 of 7)	554.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	2.83	2.77	1.14	0.8	5.32	2.82	5.98	4.18	6.29	2.51	2.51	2.19
Merged-chr12-69752124-1	chr12	69752024	69752224	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183294, intron 7 of 9)	intron (NM_183294, intron 7 of 9)	11820.0	NR_030450	751538.0		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	5.25	2.01	1.14	3.62	2.86	4.08	4.32	1.37	1.57	3.51	5.02	5.01
Merged-chr6-30468772-2	chr6	30468676	30468876	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7791.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	6.06	2.52	3.42	4.42	9.0	7.53	1.99	4.71	6.49	5.52	13.06	6.89
Merged-chr10-45045508-1	chr10	45045408	45045608	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21706.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	4.04	5.03	2.28	3.22	3.27	7.84	3.99	4.99	7.28	4.52	7.54	6.58
Merged-chr17-10572691-1	chr17	10572591	10572791	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	116475.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.63	4.28	1.71	3.22	5.32	4.39	4.32	4.35	0.39	3.01	2.01	1.57
Merged-chr17-71597330-1	chr17	71597230	71597430	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027953, intron 1 of 2)	RMER15|LTR|ERVL	951.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	0.0	4.28	4.56	0.0	2.86	4.08	3.32	0.7	2.16	3.01	0.0	6.27
Merged-chr16-52097016-1	chr16	52096916	52097116	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	Lx3C|LINE|L1	65467.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	2.02	2.52	1.71	2.01	5.73	3.76	5.98	4.35	3.74	4.52	4.52	2.82
Merged-chr18-56720031-1	chr18	56719931	56720131	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	12218.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	1.26	1.14	0.4	4.09	8.47	3.99	4.07	8.26	9.54	9.04	4.39
Merged-chr12-83487269-1	chr12	83487169	83487369	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_058212, intron 1 of 8)	CpG	467.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	4.44	6.04	2.85	2.41	1.64	2.2	4.98	3.79	4.13	1.0	4.52	5.01
Merged-chr11-55389929-1	chr11	55389829	55390029	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30151.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	2.42	2.26	3.42	0.8	1.23	4.7	0.0	4.12	5.11	5.02	2.51	3.13
Merged-chr6-135355665-1	chr6	135355565	135355765	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7266.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.23	2.01	3.42	0.8	7.36	7.84	2.66	4.57	0.0	0.0	0.0	3.13
Merged-chr3-97932925-1	chr3	97932825	97933025	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2752.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	9.69	2.77	0.0	0.0	2.86	6.9	4.65	4.49	2.75	3.01	3.01	2.82
Merged-chr4-144906060-1	chr4	144905960	144906160	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12923.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	2.02	2.52	1.14	2.41	0.41	4.39	3.99	6.0	1.57	3.01	3.52	5.01
Merged-chr6-5092153-1	chr6	5092053	5092253	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101793.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	1.62	2.52	0.57	4.83	2.45	6.9	6.31	3.79	2.36	6.03	4.02	3.13
Merged-chr9-54474296-1	chr9	54474196	54474396	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172771, intron 3 of 43)	intron (NM_172771, intron 3 of 43)	27330.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	2.02	4.28	7.99	4.83	3.27	3.14	3.99	3.98	8.46	2.01	21.61	6.89
Merged-chr7-75372174-1	chr7	75372074	75372274	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62912.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.4	0.82	4.39	4.65	4.57	2.56	2.01	1.51	1.88
Merged-chr4-150388777-1	chr4	150388677	150388877	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	106861.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.4	2.01	10.27	6.44	10.64	2.51	3.32	4.26	7.08	8.54	6.53	8.77
Merged-chr8-8983342-1	chr8	8983242	8983442	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	148946.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	2.42	2.01	12.55	1.61	4.5	4.39	6.31	6.59	1.18	1.0	2.01	0.63
Merged-chr16-29850784-1	chr16	29850684	29850884	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	128340.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	2.02	7.55	7.99	8.04	3.68	0.63	6.31	5.02	8.46	1.0	6.03	0.94
Merged-chr17-70705139-1	chr17	70705039	70705239	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	141638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.85	1.76	1.71	0.0	7.36	0.94	2.99	1.99	3.74	3.01	2.51	0.63
Merged-chr5-113007206-1	chr5	113007106	113007306	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	8332.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	8.48	3.27	5.13	5.23	7.36	3.76	4.65	4.96	3.34	5.02	2.51	1.25
Merged-chr9-79806850-1	chr9	79806750	79806950	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13209.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.0	3.27	1.14	2.41	2.45	2.2	4.32	4.96	3.93	1.51	2.51	1.88
Merged-chr10-91210787-1	chr10	91210687	91210887	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151510, intron 3 of 3)	T-rich|Low_complexity|Low_complexity	9832.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	1.62	3.02	4.56	1.21	4.5	1.25	3.32	5.21	5.11	3.51	2.01	4.07
Merged-chr13-117284241-1	chr13	117284141	117284341	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63668.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	1.61	0.82	4.7	4.65	4.54	3.93	2.01	8.54	1.57
Merged-chr8-46921323-1	chr8	46921223	46921423	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65564.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.23	1.76	3.42	2.82	3.68	3.76	5.98	4.07	0.59	0.5	0.0	1.57
Merged-chr5-122970226-1	chr5	122970126	122970326	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	18873.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	1.62	5.79	5.7	8.04	2.86	4.7	2.99	5.55	1.97	1.0	0.0	0.0
Merged-chr7-19210873-2	chr7	19210766	19210966	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1672.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	6.46	5.53	17.11	8.45	2.45	5.96	2.33	5.16	15.34	7.03	9.04	9.08
Merged-chr9-53676312-1	chr9	53676212	53676412	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-8805.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	2.42	8.55	9.7	4.42	2.86	4.39	3.32	1.82	12.0	16.07	7.03	5.33
Merged-chr19-55921619-1	chr19	55921519	55921719	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	26298.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.42	2.01	1.14	0.8	0.0	0.0	9.3	4.96	2.56	1.51	0.5	2.82
Merged-chr2-35441696-1	chr2	35441596	35441796	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19753.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.85	8.3	6.28	7.24	2.86	2.82	4.65	5.78	2.75	4.52	0.0	4.39
Merged-chr4-152171722-1	chr4	152171622	152171822	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6378.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	6.46	1.26	5.7	3.22	2.45	8.78	1.66	5.27	3.93	6.03	8.04	4.39
Merged-chr15-51964516-1	chr15	51964416	51964616	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009009, intron 13 of 13)	intron (NM_009009, intron 13 of 13)	27244.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	4.44	7.8	4.56	8.04	0.41	0.0	1.33	1.68	8.26	5.02	2.51	5.95
Merged-chr3-101775983-1	chr3	101775883	101776083	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	60240.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	2.83	2.01	3.42	0.4	2.45	7.53	0.66	5.5	2.36	0.0	3.52	3.45
Merged-chr13-43750527-1	chr13	43750427	43750627	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	33736.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	6.86	5.53	8.56	3.22	6.95	5.02	1.99	3.48	7.47	5.02	11.05	2.82
Merged-chr6-124321643-1	chr6	124321543	124321743	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 11 of 16)	RLTR19-int|LTR|ERVK	16992.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	2.26	1.71	4.02	6.14	5.96	2.99	4.01	0.98	2.01	2.51	2.51
Merged-chr11-82763919-1	chr11	82763819	82764019	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	402.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	9.29	8.8	9.13	10.05	8.59	9.72	6.98	8.78	9.05	15.57	6.53	4.7
Merged-chr5-137863603-1	chr5	137863503	137863703	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5554.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	2.42	5.03	4.56	0.8	11.45	8.15	9.3	2.72	6.1	3.01	7.03	0.0
Merged-chr13-110382639-1	chr13	110382539	110382739	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12405.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.65	4.28	1.71	6.03	4.09	4.7	8.97	6.34	3.15	2.01	10.05	4.39
Merged-chr13-33953039-1	chr13	33952939	33953139	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-11620.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.81	2.26	3.42	1.21	2.05	4.39	2.99	4.79	6.1	1.51	5.02	3.13
Merged-chr6-119897766-1	chr6	119897666	119897866	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4932.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	2.83	2.52	1.71	2.41	1.23	5.02	2.99	5.69	3.34	0.5	4.52	3.45
Merged-chr2-124645912-1	chr2	124645812	124646012	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-7669.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.81	3.77	1.14	1.21	0.41	6.27	0.66	1.12	1.38	2.01	0.5	1.25
Merged-chr3-28165756-1	chr3	28165656	28165856	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97458.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.63	3.27	3.42	7.24	3.68	2.51	2.33	4.51	10.03	7.03	10.05	2.82
Merged-chr3-97665682-1	chr3	97665582	97665782	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182997, intron 5 of 7)	L1MB7|LINE|L1	7470.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	6.06	4.53	2.28	8.85	2.45	5.64	8.3	4.77	9.05	4.52	5.02	2.51
Merged-chr4-62686881-1	chr4	62686781	62686981	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	12907.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.65	3.52	5.7	3.62	6.14	1.25	7.97	4.09	0.59	2.01	4.02	1.25
Merged-chr2-150868882-1	chr2	150868782	150868982	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	L1M4|LINE|L1	-26312.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.81	1.01	3.42	0.8	8.18	2.2	2.99	4.68	3.15	1.51	0.5	2.51
Merged-chr10-121500263-1	chr10	121500163	121500363	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24013.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.85	2.26	1.14	2.82	4.09	0.63	0.33	1.54	7.47	5.02	13.06	8.14
Merged-chr7-24552127-1	chr7	24552027	24552227	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360169, exon 1 of 16)	5' UTR (NM_001360169, exon 1 of 16)	640.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.0	2.52	2.85	3.62	0.82	0.63	6.31	3.67	1.18	4.02	3.01	2.82
Merged-chr16-20213803-1	chr16	20213703	20213903	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033237, intron 21 of 29)	intron (NM_001033237, intron 21 of 29)	27555.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	2.02	1.26	3.99	2.82	2.86	5.96	0.0	3.56	1.18	5.52	6.03	0.94
Merged-chr11-118130110-1	chr11	118130010	118130210	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001167746)	promoter-TSS (NM_001167746)	-891.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.23	1.51	3.42	2.01	4.91	2.2	5.31	3.7	5.11	4.02	2.51	1.57
Merged-chr11-116622845-1	chr11	116622745	116622945	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1407.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.86	1.01	0.0	0.8	4.09	6.27	3.65	1.54	9.83	6.53	3.52	3.45
Merged-chr3-31432037-1	chr3	31431937	31432137	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-121718.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.81	0.5	0.0	0.8	4.09	3.14	5.31	4.07	4.92	1.0	2.01	1.25
Merged-chr4-155201699-1	chr4	155201599	155201799	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20836.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	8.88	7.29	5.13	3.22	4.5	4.7	1.66	6.9	7.08	4.52	4.02	6.89
Merged-chr16-33693824-1	chr16	33693724	33693924	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	MTD|LTR|ERVL-MaLR	9358.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	6.06	3.52	1.14	3.22	0.41	1.88	6.98	4.6	1.18	2.51	8.04	5.01
Merged-chr5-4186968-2	chr5	4186868	4187068	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5399.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.4	1.01	1.14	0.0	6.95	5.02	3.65	4.63	5.7	14.56	12.56	6.27
Merged-chr9-116108949-1	chr9	116108849	116109049	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 4 of 6)	L1MA5|LINE|L1	66414.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.21	1.76	6.85	2.41	7.36	3.14	10.63	5.69	1.18	1.0	1.51	2.51
Merged-chr13-37619430-1	chr13	37619330	37619530	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-206608.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	9.29	8.3	1.14	1.21	6.55	7.21	9.63	4.26	2.36	2.51	3.01	7.21
Merged-chr2-3322888-1	chr2	3322788	3322988	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9740.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	2.83	1.26	3.42	4.83	6.55	5.64	2.66	4.12	3.34	6.03	10.05	4.7
Merged-chr13-81053766-1	chr13	81053666	81053866	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	89692.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.42	3.02	18.83	6.44	5.73	1.57	4.32	10.37	13.37	9.04	8.04	4.7
Merged-chr9-110660366-1	chr9	110660266	110660466	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	3863.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	2.02	1.01	4.56	2.41	0.82	0.63	0.66	2.05	8.06	2.01	11.05	2.82
Merged-chr1-40479638-1	chr1	40479538	40479738	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	13632.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.81	0.0	3.42	0.0	8.59	4.08	2.33	4.96	0.0	0.0	2.01	0.94
Merged-chr5-114596419-1	chr5	114596319	114596519	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28168.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	2.42	2.52	1.14	0.4	6.14	0.63	3.99	3.73	5.7	2.01	1.0	0.94
Merged-chr11-54155097-1	chr11	54154997	54155197	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54173.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	4.44	3.27	2.85	2.01	5.32	2.51	2.66	6.25	2.75	1.0	7.03	2.19
Merged-chr10-30677104-1	chr10	30677004	30677204	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21237.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	1.62	2.26	1.71	3.22	3.68	3.14	3.32	4.12	5.51	3.01	7.03	3.76
Merged-chr6-129544389-1	chr6	129544289	129544489	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11105.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	4.44	4.02	3.42	4.42	4.5	4.39	4.98	3.45	12.78	6.53	9.04	5.95
Merged-chr2-164952905-1	chr2	164952805	164953005	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013599, exon 10 of 13)	exon (NM_013599, exon 10 of 13)	4686.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	6.86	5.28	7.42	3.22	8.59	2.51	2.33	4.51	8.46	8.54	9.55	2.82
Merged-chr6-34351187-1	chr6	34351087	34351287	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-2959.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	2.42	0.0	0.0	3.22	6.95	4.08	1.0	2.66	4.33	2.01	0.0	3.13
Merged-chr16-22070762-2	chr16	22070642	22070842	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183029, intron 10 of 15)	intron (NM_183029, intron 10 of 15)	61258.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	7.27	4.53	8.56	4.83	3.68	3.76	7.97	4.46	9.05	7.53	6.53	4.39
Merged-chr10-57804927-1	chr10	57804827	57805027	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020561, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	10383.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.4	0.5	5.7	0.0	2.05	1.25	3.99	4.99	2.75	2.01	1.0	1.57
Merged-chr19-29925053-1	chr19	29924953	29925153	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133775)	promoter-TSS (NM_133775)	-60.0	NM_133775	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	3.23	2.77	7.42	11.66	8.18	7.21	6.98	3.87	5.9	8.03	8.54	2.82
Merged-chr6-134454247-1	chr6	134454147	134454347	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 21 of 22)	intron (NM_008514, intron 21 of 22)	39819.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.06	1.26	2.85	4.02	4.09	4.39	2.66	4.07	5.51	3.01	3.52	5.01
Merged-chr11-75756375-1	chr11	75756275	75756475	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009536, intron 3 of 5)	intron (NM_009536, intron 3 of 5)	23488.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	7.27	3.02	1.14	9.25	6.95	2.51	1.33	4.88	5.31	7.53	4.02	0.0
Merged-chr14-31172159-1	chr14	31172059	31172259	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-3518.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.81	1.26	1.14	7.24	2.86	5.64	1.33	4.57	4.33	2.01	7.03	2.82
Merged-chr11-69197344-1	chr11	69197244	69197444	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009661, intron 2 of 13)	intron (NM_009661, intron 2 of 13)	499.0	NM_009661	11688.0	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	1.62	1.76	1.14	1.61	2.05	0.31	5.65	0.45	8.26	4.52	9.55	1.57
Merged-chr10-19143223-1	chr10	19143123	19143323	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_038021, intron 1 of 3)	intron (NR_038021, intron 1 of 3)	1474.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	4.04	6.79	7.99	0.0	3.68	6.9	5.98	1.68	5.9	10.04	5.53	2.51
Merged-chr9-78821753-1	chr9	78821653	78821853	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	206207.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.0	1.01	0.0	0.0	1.64	2.51	5.31	5.36	0.39	0.0	0.0	0.31
Merged-chr4-114997913-1	chr4	114997813	114998013	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2205.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	2.42	2.26	2.28	0.8	6.14	3.76	7.31	3.67	4.13	3.01	14.57	5.95
Merged-chr8-69328810-1	chr8	69328710	69328910	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	57730.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	4.04	5.53	0.0	0.4	5.73	8.47	5.98	4.4	5.9	4.52	5.02	6.58
Merged-chr13-107794736-1	chr13	107794636	107794836	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	L1MA5|LINE|L1	95328.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.21	4.78	10.27	5.23	6.14	0.63	3.32	6.03	2.75	3.51	2.01	1.88
Merged-chr10-68279632-1	chr10	68279532	68279732	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-906.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.04	7.29	3.42	4.02	4.09	8.47	2.99	3.93	8.65	11.55	5.53	2.51
Merged-chr4-130892361-1	chr4	130892261	130892461	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20973.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.63	2.26	11.41	5.63	6.14	4.08	3.99	2.52	3.93	2.01	8.04	4.39
Merged-chr1-161400371-1	chr1	161400271	161400471	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	4933.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.02	6.79	4.56	3.22	5.32	5.33	2.99	4.37	4.92	3.01	13.57	5.01
Merged-chr2-146416516-1	chr2	146416416	146416616	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	95488.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.81	4.28	6.28	3.22	1.64	0.0	3.65	1.26	8.26	0.5	7.54	10.65
Merged-chr6-125218775-2	chr6	125218661	125218861	+	557.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080557, intron 2 of 3)	intron (NM_001080557, intron 2 of 3)	3180.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	10.09	6.54	5.7	2.82	4.5	9.09	1.99	4.12	8.65	8.03	11.56	8.77
Merged-chr16-65469920-1	chr16	65469820	65470020	+	557.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-50709.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.81	3.02	2.28	1.61	6.55	4.39	7.97	4.71	5.11	0.5	1.51	7.83
Merged-chr8-128652907-1	chr8	128652807	128653007	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-32747.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	2.83	4.53	4.56	2.41	5.32	9.09	6.64	3.79	5.11	6.03	5.53	5.64
Merged-chr2-52860554-1	chr2	52860454	52860654	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	2686.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.04	1.76	7.42	0.4	8.59	7.53	5.65	3.73	8.26	8.03	3.01	5.33
Merged-chr6-88500988-1	chr6	88500888	88501088	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17812.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	3.23	3.52	2.28	3.62	1.64	5.96	5.65	4.21	2.56	1.51	4.52	2.19
Merged-chr9-118908424-2	chr9	118908326	118908526	+	557.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18110.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	10.9	5.79	0.0	0.8	4.5	4.39	4.32	4.29	7.87	6.03	11.05	8.46
Merged-chr1-106643478-2	chr1	106643383	106643583	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	70807.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	1.62	2.26	1.71	9.25	1.64	5.02	2.33	4.4	5.7	7.53	10.55	4.07
Merged-chr10-80672384-1	chr10	80672284	80672484	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	3909.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.83	4.78	4.56	2.01	4.09	4.39	2.99	4.07	7.47	3.51	5.02	3.76
Merged-chr10-128273088-1	chr10	128272988	128273188	+	557.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019963, intron 1 of 23)	B2_Mm1a|SINE|B2	2590.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	5.25	5.28	9.13	0.8	9.41	3.76	1.33	1.65	11.21	13.05	6.03	7.52
Merged-chr18-10894272-1	chr18	10894172	10894372	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108720.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	2.83	0.5	0.0	0.0	5.73	5.02	4.65	4.29	5.11	2.01	3.01	2.51
Merged-chr5-64414679-2	chr5	64414577	64414777	+	557.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53265.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.67	8.55	1.14	4.42	8.18	6.9	6.31	2.64	3.93	1.51	2.01	2.19
Merged-chr3-138964062-1	chr3	138963962	138964162	+	557.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356388, intron 5 of 13)	intron (NM_001356388, intron 5 of 13)	111139.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.44	3.77	5.7	7.64	10.64	7.84	6.31	4.29	6.69	5.52	9.04	3.76
Merged-chr17-34309400-1	chr17	34309300	34309500	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	3533.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.04	9.81	1.71	1.61	3.27	2.51	0.0	0.7	9.24	6.53	3.52	5.95
Merged-chr10-53346717-1	chr10	53346617	53346817	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001141927)	TTS (NM_001141927)	9031.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	4.04	1.51	1.14	3.22	5.32	2.82	0.66	5.02	2.56	7.53	8.04	8.46
Merged-chr9-21950522-1	chr9	21950422	21950622	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5231.0	NM_025870	66962.0	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	1.62	3.77	0.0	0.8	3.27	3.14	5.31	4.4	14.75	4.52	9.55	2.51
Merged-chr7-24083075-1	chr7	24082975	24083175	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289637, intron 1 of 3)	RMER15|LTR|ERVL	1178.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	7.27	3.52	0.0	0.8	6.55	5.33	3.32	5.21	10.62	7.03	7.54	2.51
Merged-chr10-21054949-1	chr10	21054849	21055049	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177776, intron 2 of 6)	intron (NM_001177776, intron 2 of 6)	14129.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.83	5.79	7.42	0.0	0.41	4.7	2.33	5.05	4.52	2.51	3.52	3.13
Merged-chr8-41015330-1	chr8	41015230	41015430	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-2138.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.42	0.75	0.57	2.41	9.0	3.14	2.66	4.15	3.54	2.51	6.03	3.76
Merged-chr14-54233443-1	chr14	54233343	54233543	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20486.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	10.09	6.29	2.85	3.22	1.64	2.82	2.66	2.58	6.29	1.51	9.55	10.65
Merged-chr18-20695175-1	chr18	20695075	20695275	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-29915.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	3.23	2.01	1.14	2.82	4.91	2.2	5.31	7.12	2.56	6.03	3.01	4.07
Merged-chr13-104985893-1	chr13	104985793	104985993	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	69037.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	3.63	1.51	1.71	2.41	5.32	1.25	1.99	6.45	4.13	2.01	3.01	0.63
Merged-chr7-45413617-1	chr7	45413517	45413717	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198190)	promoter-TSS (NM_198190)	-78.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	3.63	1.26	6.28	0.4	4.09	1.57	0.66	1.21	3.15	1.0	1.51	5.33
Merged-chr11-98338735-1	chr11	98338635	98338835	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-9090.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	1.21	2.77	0.0	4.02	0.41	0.0	1.66	1.29	2.36	0.5	7.54	1.25
Merged-chr3-44715647-1	chr3	44715547	44715747	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	662613.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.81	2.01	0.0	0.8	3.27	10.66	0.66	4.32	4.52	6.03	2.01	4.7
Merged-chr5-140349147-1	chr5	140349047	140349247	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172277, intron 7 of 10)	MTA_Mm|LTR|ERVL-MaLR	17191.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	5.65	0.5	4.56	7.24	4.5	1.57	4.32	3.45	2.16	1.51	5.53	1.88
Merged-chr4-130001948-1	chr4	130001848	130002048	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199696, intron 2 of 28)	intron (NM_001199696, intron 2 of 28)	9894.0	NM_001290715	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.0	1.51	1.14	0.0	1.64	0.0	0.0	0.42	6.69	6.53	0.5	6.27
Merged-chr14-31640604-1	chr14	31640504	31640704	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	361.0	NM_019975	56794.0	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	8.48	10.82	9.7	7.64	7.77	9.09	4.65	6.36	6.49	4.52	7.54	1.88
Merged-chr10-61469047-1	chr10	61468947	61469147	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6786.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	2.42	1.01	1.14	4.02	10.64	8.78	4.98	4.09	3.93	3.01	9.04	1.25
Merged-chr13-24297522-1	chr13	24297422	24297622	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16732.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	8.88	1.51	2.28	10.46	1.64	5.96	0.0	4.15	3.54	5.02	4.02	4.07
Merged-chr2-68435768-1	chr2	68435668	68435868	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	36213.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.4	0.75	3.42	0.4	3.27	6.27	2.99	2.86	5.51	0.0	2.01	7.52
Merged-chr15-83293979-1	chr15	83293879	83294079	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-42205.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	7.27	8.55	4.56	2.41	4.91	8.15	1.99	2.47	5.31	0.0	2.01	3.13
Merged-chr6-136655218-1	chr6	136655118	136655318	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	B3|SINE|B2	6675.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.42	3.27	1.14	3.62	2.45	0.63	6.98	3.48	6.88	3.51	2.51	3.45
Merged-chr7-4460710-1	chr7	4460610	4460810	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4025.0	NM_026146	67425.0	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.82	0.94	0.66	0.0	10.03	10.54	9.04	0.0
Merged-chr10-121031945-1	chr10	121031845	121032045	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2059.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	8.08	2.52	1.14	7.24	2.86	3.76	4.65	4.54	0.79	0.0	6.53	4.39
Merged-chr15-8706488-1	chr15	8706388	8706588	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	4319.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.04	2.52	5.13	3.22	0.82	3.76	3.65	3.06	5.9	14.56	7.03	4.7
Merged-chr15-85151584-1	chr15	85151484	85151684	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040360, intron 2 of 2)	intron (NR_040360, intron 2 of 2)	4548.0	NR_040360	100502602.0	Mm.390830	NR_040360	ENSMUSG00000115924	Gm19277	-	predicted gene, 19277	ncRNA	2.83	6.04	1.14	3.22	4.09	4.08	5.98	4.46	5.31	4.02	11.56	0.63
Merged-chr7-44501881-1	chr7	44501781	44501981	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028169)	TTS (NM_028169)	5293.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	2.83	6.54	2.28	5.23	9.0	7.53	1.99	1.88	5.31	5.52	7.54	7.83
Merged-chr8-94594451-1	chr8	94594351	94594551	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028221, intron 1 of 7)	intron (NM_028221, intron 1 of 7)	7275.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	6.86	2.52	2.28	9.65	7.36	6.59	3.99	6.7	4.33	5.52	3.52	1.25
Merged-chr7-16263622-1	chr7	16263522	16263722	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4082.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	6.06	3.77	7.42	3.62	9.82	4.39	4.65	4.91	6.1	3.51	2.01	2.82
Merged-chr10-86703208-1	chr10	86703108	86703308	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011631, intron 3 of 17)	intron (NM_011631, intron 3 of 17)	2236.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	5.25	3.02	0.0	3.22	2.45	0.63	4.32	4.51	3.54	1.51	3.01	1.88
Merged-chr5-129942834-1	chr5	129942734	129942934	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	725.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.4	3.52	2.28	0.8	2.45	7.84	2.33	4.99	11.01	4.02	8.54	5.01
Merged-chr16-50306908-1	chr16	50306808	50307008	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	125481.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	1.62	3.02	1.14	3.62	6.55	4.39	0.66	5.66	2.95	1.0	2.01	5.64
Merged-chrX-139416933-1	chrX	139416833	139417033	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59195.0	NR_045456	78526.0	Mm.439073	NR_045455	ENSMUSG00000086807	Platr21	C330013F16Rik	pluripotency associated transcript 21	ncRNA	1.21	3.52	5.13	3.22	1.23	4.08	2.33	4.43	10.03	1.0	3.52	2.51
Merged-chrX-159503309-1	chrX	159503209	159503409	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-29359.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	1.62	3.02	7.42	0.8	2.45	3.14	8.3	4.57	5.51	2.51	3.52	4.7
Merged-chr18-65170782-1	chr18	65170682	65170882	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 13 of 30)	intron (NM_001114386, intron 13 of 30)	-78079.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.4	1.26	2.28	0.8	1.64	5.96	1.99	5.16	4.92	4.52	6.53	4.39
Merged-chr2-37423932-1	chr2	37423832	37424032	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1029.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	7.67	10.56	3.42	4.83	5.73	4.39	2.66	0.36	3.93	6.03	3.01	1.57
Merged-chr5-143512460-1	chr5	143512360	143512560	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	15533.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	2.42	3.27	5.13	1.61	8.18	0.94	2.66	4.07	4.72	0.0	2.01	3.13
Merged-chr13-34189688-1	chr13	34189588	34189788	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 10 of 10)	MTC|LTR|ERVL-MaLR	26724.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.83	2.77	2.28	4.42	1.23	3.76	5.98	4.85	6.69	1.51	4.02	4.39
Merged-chr5-148536347-1	chr5	148536247	148536447	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	15326.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.04	1.76	2.28	2.01	4.91	6.59	0.66	3.64	2.56	6.03	8.54	5.33
Merged-chr1-131094696-1	chr1	131094596	131094796	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	MIR3|SINE|MIR	3147.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	8.88	3.77	3.42	0.0	6.14	5.02	1.66	2.33	3.54	9.04	7.03	6.27
Merged-chr19-21288090-1	chr19	21287990	21288190	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	15812.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	6.86	8.05	1.14	0.0	2.86	5.64	0.0	0.14	3.54	3.01	0.0	1.25
Merged-chr2-30269606-1	chr2	30269506	30269706	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	2787.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	2.02	3.77	1.71	1.21	6.95	3.45	5.65	2.47	3.34	3.01	3.01	3.76
Merged-chr1-155121576-1	chr1	155121476	155121676	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-21940.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	2.02	6.54	1.14	1.21	4.09	10.66	1.0	0.11	7.87	5.52	8.54	3.45
Merged-chrX-167200410-1	chrX	167200310	167200510	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8808.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	10.9	6.29	0.0	1.21	0.0	4.7	0.66	0.5	1.18	3.01	0.0	2.19
Merged-chr5-143470556-1	chr5	143470456	143470656	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	Lx8|LINE|L1	6063.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	2.83	3.52	6.85	0.0	2.45	5.02	0.66	4.91	4.13	4.02	2.51	2.82
Merged-chr2-60813199-1	chr2	60813099	60813299	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	68239.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.5	1.14	1.61	5.73	4.08	3.65	4.46	0.59	2.01	1.0	0.63
Merged-chr16-23332428-1	chr16	23332328	23332528	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	L1M4c|LINE|L1	41958.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.63	3.52	5.13	4.02	9.82	3.14	3.65	4.32	5.11	2.01	4.02	4.7
Merged-chr15-98533138-1	chr15	98533038	98533238	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153345, intron 2 of 10)	B3|SINE|B2	1131.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	3.23	0.75	6.28	3.62	3.68	5.02	2.99	2.1	5.51	1.0	2.01	3.45
Merged-chr19-6663576-1	chr19	6663476	6663676	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120506.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.23	4.28	0.0	1.61	8.59	6.59	1.33	4.77	9.05	9.04	10.05	3.45
Merged-chr4-141731570-1	chr4	141731470	141731670	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8151.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.0	1.51	1.71	0.8	2.45	5.02	1.66	7.04	1.38	2.51	3.01	1.57
Merged-chr6-114886204-1	chr6	114886104	114886304	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	35617.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.46	1.51	1.71	1.61	6.95	6.27	0.66	3.93	3.93	3.01	5.02	0.0
Merged-chr13-59704695-1	chr13	59704595	59704795	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028157, intron 2 of 3)	intron (NM_028157, intron 2 of 3)	1502.0	NM_028157	72219.0	Mm.233883	NM_028157	ENSMUSG00000050876	Spata31d1a	1700013B16Rik|Fam75d1a|Fam75d3	spermatogenesis associated 31 subfamily D, member 1A	protein-coding	4.04	0.5	5.13	4.83	6.55	2.51	7.97	4.43	6.49	3.51	7.03	2.82
Merged-chr5-62751880-1	chr5	62751780	62751980	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	14297.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	2.42	0.5	3.42	6.44	4.5	3.76	4.65	4.57	2.75	2.51	2.51	0.0
Merged-chr10-78130195-1	chr10	78130095	78130295	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39573.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	2.02	4.28	0.57	1.61	2.45	9.72	4.32	2.16	7.08	8.03	6.03	4.07
Merged-chr5-141055721-1	chr5	141055621	141055821	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-55125.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.27	3.52	6.85	6.84	7.77	7.21	2.33	3.59	6.69	6.53	4.02	0.94
Merged-chr9-123768547-1	chr9	123768447	123768647	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	1336.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	2.83	5.03	3.42	3.22	3.27	3.76	2.33	1.4	5.7	8.03	3.01	3.45
Merged-chr16-5146920-1	chr16	5146820	5147020	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001127725)	promoter-TSS (NM_001127725)	-189.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	10.5	5.79	2.28	3.22	3.68	5.96	4.65	4.57	6.49	2.01	4.52	4.39
Merged-chr4-47037499-1	chr4	47037399	47037599	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151464, intron 8 of 16)	intron (NR_151464, intron 8 of 16)	19807.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	2.42	1.26	3.99	4.83	2.05	4.39	2.99	8.38	11.01	3.51	5.53	4.7
Merged-chr8-84921663-1	chr8	84921563	84921763	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019945, intron 12 of 25)	intron (NM_019945, intron 12 of 25)	8328.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.81	4.02	1.14	2.82	3.27	5.02	0.66	3.14	5.51	1.51	3.52	8.77
Merged-chr10-85161909-1	chr10	85161809	85162009	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23145.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	2.28	0.0	4.91	2.82	4.32	6.59	2.56	3.01	2.01	0.63
Merged-chr19-46531837-1	chr19	46531737	46531937	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30189.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	1.21	1.76	3.99	4.83	6.14	7.21	5.98	5.41	0.39	1.51	1.0	2.19
Merged-chr15-78842606-1	chr15	78842506	78842706	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027219)	promoter-TSS (NM_027219)	-41.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	5.25	3.77	3.99	1.61	1.23	6.9	4.98	3.9	10.42	3.01	6.53	4.39
Merged-chr15-73610049-1	chr15	73609949	73610149	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	7275.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.44	2.26	5.7	3.62	4.09	1.57	4.65	7.6	3.74	4.52	5.53	4.07
Merged-chr12-91161424-1	chr12	91161324	91161524	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	51195.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	1.62	0.5	0.0	0.0	0.82	0.94	5.31	4.04	1.97	3.01	2.51	3.45
Merged-chr2-35464716-1	chr2	35464616	35464816	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3267.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.25	6.29	0.57	8.45	5.73	2.51	4.32	4.18	12.0	3.51	9.04	2.51
Merged-chr1-105660177-1	chr1	105660077	105660277	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013784, intron 1 of 30)	intron (NM_013784, intron 1 of 30)	3499.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	8.88	3.02	6.85	3.22	5.32	6.59	0.66	4.43	5.31	4.52	4.02	5.64
Merged-chr18-24112707-1	chr18	24112607	24112807	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172625, exon 3 of 5)	exon (NM_172625, exon 3 of 5)	9112.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	2.83	1.26	0.0	4.02	6.95	3.14	7.64	3.87	11.41	0.5	7.54	5.01
Merged-chr12-4107565-1	chr12	4107465	4107665	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153082, exon 7 of 7)	3' UTR (NM_153082, exon 7 of 7)	24991.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	5.25	4.28	0.0	2.82	6.14	8.78	4.65	4.01	3.93	4.02	5.53	3.76
Merged-chr14-54912733-1	chr14	54912633	54912833	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360406, exon 2 of 10)	5' UTR (NM_001360406, exon 2 of 10)	399.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	3.63	6.29	1.14	0.0	6.14	3.76	4.32	5.72	5.51	4.52	3.01	2.82
Merged-chr11-103306587-1	chr11	103306487	103306687	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38115.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.23	3.02	3.99	5.23	0.82	5.33	3.99	4.96	4.72	1.51	2.01	2.82
Merged-chr12-102628433-1	chr12	102628333	102628533	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	56587.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	1.01	2.28	0.0	4.09	3.14	0.0	0.5	6.69	0.0	1.0	8.77
Merged-chr1-153408575-1	chr1	153408475	153408675	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033736, intron 1 of 3)	intron (NR_033736, intron 1 of 3)	5658.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	4.04	2.01	1.71	0.8	2.45	5.02	1.0	1.4	9.24	4.02	1.0	5.33
Merged-chr13-99005993-1	chr13	99005893	99006093	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	-21428.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.23	5.03	2.85	3.22	2.05	2.82	4.98	3.93	5.51	5.52	7.03	5.64
Merged-chr17-43060266-1	chr17	43060166	43060366	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	43711.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.81	4.78	0.0	3.62	1.23	6.27	2.99	7.12	6.49	1.51	3.52	0.94
Merged-chr3-65661955-1	chr3	65661855	65662055	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2667.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	9.69	3.52	6.28	7.24	3.27	8.78	4.32	3.73	10.62	11.55	5.02	5.64
Merged-chr7-125762530-1	chr7	125762430	125762630	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358287, intron 4 of 26)	intron (NM_001358287, intron 4 of 26)	54660.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	2.02	4.28	1.14	0.0	6.55	0.0	0.0	6.17	7.28	0.0	4.52	3.76
Merged-chr19-21510254-1	chr19	21510154	21510354	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16E1|LTR|ERVL	-37593.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.83	1.51	1.14	1.21	3.27	4.08	3.32	3.95	2.36	3.01	3.01	0.31
Merged-chr18-54019665-1	chr18	54019565	54019765	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	157552.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	1.21	2.26	3.42	6.84	0.41	0.94	2.66	4.57	2.56	1.0	2.51	3.13
Merged-chr11-72520081-1	chr11	72519981	72520181	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029932, intron 8 of 11)	intron (NM_029932, intron 8 of 11)	-30161.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	2.42	3.77	1.14	3.62	5.73	9.09	3.65	2.69	1.77	3.51	7.54	2.19
Merged-chr18-82469543-1	chr18	82469443	82469643	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5580.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.23	1.51	2.28	3.22	14.73	8.47	1.99	4.35	9.05	7.53	10.05	4.07
Merged-chr8-70627949-1	chr8	70627849	70628049	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4146.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.27	5.53	2.28	4.42	0.82	1.88	0.66	0.84	8.26	10.04	5.02	6.58
Merged-chr11-110608693-1	chr11	110608593	110608793	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129353.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.4	4.02	2.28	2.41	4.09	10.35	5.65	4.35	2.36	0.0	0.0	0.31
Merged-chr13-30766600-1	chr13	30766500	30766700	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	17367.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	1.62	4.28	4.56	0.8	3.68	5.96	1.66	4.91	7.67	7.53	1.0	2.19
Merged-chr17-87949192-2	chr17	87949090	87949290	+	556.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25860.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	2.83	1.51	4.56	2.41	7.36	6.9	8.3	4.4	7.08	4.52	8.54	7.52
Merged-chr18-82906310-2	chr18	82906208	82906408	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4571.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.85	1.76	2.28	0.8	4.09	5.33	5.98	2.52	8.46	6.53	5.02	4.7
Merged-chr9-61374651-2	chr9	61374529	61374729	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 3 of 19)	(CAGGG)n|Simple_repeat|Simple_repeat	2263.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	6.46	6.29	5.13	6.84	5.32	10.98	2.33	4.63	9.44	9.54	7.03	3.76
Merged-chr6-26104880-1	chr6	26104780	26104980	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	173454.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.85	1.01	2.28	2.82	2.45	5.33	4.65	3.62	5.51	1.51	2.01	2.19
Merged-chr17-80208563-1	chr17	80208463	80208663	+	556.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1258.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	6.46	4.28	3.42	2.82	6.14	3.14	3.99	3.28	8.26	5.02	9.04	7.21
Merged-chr6-72616274-1	chr6	72616174	72616374	+	556.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009444, exon 2 of 4)	exon (NM_009444, exon 2 of 4)	474.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	7.27	6.54	2.28	5.23	4.09	5.02	1.0	3.2	7.87	5.52	8.54	7.21
Merged-chr9-79785196-2	chr9	79785100	79785300	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133718, intron 1 of 6)	L2|LINE|L2	8230.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	4.04	5.79	13.69	4.42	7.36	4.7	1.33	6.62	6.49	5.02	13.57	11.59
Merged-chr13-98813790-2	chr13	98813699	98813899	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1650.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.42	6.29	1.14	0.0	8.59	9.41	1.99	4.21	12.78	10.04	4.02	3.76
Merged-chr4-140902584-2	chr4	140902494	140902694	+	556.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3766.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	10.09	5.28	4.56	1.61	4.91	2.82	2.33	4.93	6.29	9.54	9.04	5.64
Merged-chr6-140577585-2	chr6	140577481	140577681	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144920, intron 22 of 30)	intron (NM_144920, intron 22 of 30)	-45082.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.81	5.03	4.56	1.61	4.91	4.08	8.3	3.53	6.29	4.02	8.04	3.45
Merged-chr18-61416870-2	chr18	61416747	61416947	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16416.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	6.86	1.76	7.42	5.63	5.32	5.33	2.66	5.3	8.26	10.54	6.03	5.64
Merged-chr1-106220626-1	chr1	106220526	106220726	+	556.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	48757.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.4	4.28	6.28	3.62	7.77	6.59	9.97	5.36	6.1	8.54	7.54	1.88
Merged-chr1-36127872-2	chr1	36127771	36127971	+	556.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16442.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	5.65	1.51	0.57	0.0	5.73	8.78	2.33	3.76	8.26	3.01	10.55	6.89
Merged-chrX-153699261-1	chrX	153699161	153699361	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-2981.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	8.48	3.02	9.13	14.48	6.14	5.64	1.33	4.99	2.56	8.03	8.04	4.39
Merged-chr1-135110328-1	chr1	135110228	135110428	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007955, exon 32 of 38)	exon (NM_007955, exon 32 of 38)	-5052.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	8.88	2.01	9.7	4.42	2.45	4.39	1.66	4.26	2.95	6.03	4.52	1.88
Merged-chr6-72135502-1	chr6	72135402	72135602	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-12305.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.4	0.0	1.14	0.8	0.41	2.2	2.33	4.32	4.33	4.52	1.0	1.88
Merged-chr9-107521886-1	chr9	107521786	107521986	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-12059.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	2.42	1.01	2.28	3.62	2.05	7.84	4.32	3.22	0.59	1.0	1.51	2.82
Merged-chr3-75219403-1	chr3	75219303	75219503	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50675.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.46	2.26	1.14	5.23	3.27	4.39	2.66	4.26	10.03	7.03	9.04	4.07
Merged-chr1-166115963-1	chr1	166115863	166116063	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033344, intron 2 of 5)	L2b|LINE|L2	11935.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	1.62	1.01	0.0	0.0	0.82	1.88	4.65	4.68	1.57	0.0	0.0	1.88
Merged-chr1-148893674-1	chr1	148893574	148893774	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	1028765.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.42	1.76	4.56	5.23	0.82	1.25	4.65	5.89	0.39	1.0	2.51	3.45
Merged-chr15-81355533-1	chr15	81355433	81355633	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011399, intron 1 of 8)	B3|SINE|B2	5232.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	8.08	2.52	1.14	0.8	3.27	1.88	5.31	3.87	8.06	7.03	7.03	6.89
Merged-chr1-107565740-1	chr1	107565640	107565840	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24266.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	2.83	4.78	1.14	1.61	3.27	4.08	5.98	3.25	10.23	2.01	9.04	7.21
Merged-chr19-17252280-1	chr19	17252180	17252380	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87225.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	1.62	4.53	6.85	0.0	4.09	3.14	0.66	2.92	5.31	8.03	12.06	2.82
Merged-chr9-45944895-1	chr9	45944795	45944995	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359653, intron 16 of 26)	intron (NM_001359653, intron 16 of 26)	-5305.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	2.83	0.0	0.0	2.82	6.14	0.94	0.0	3.64	1.38	1.0	2.51	3.45
Merged-chr19-29505757-1	chr19	29505657	29505857	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015567, intron 3 of 3)	ORR1D2|LTR|ERVL-MaLR	16230.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.04	0.0	5.13	0.0	2.05	1.25	0.66	1.63	9.05	3.51	13.06	1.25
Merged-chr9-47699878-1	chr9	47699778	47699978	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	118330.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.65	2.26	0.0	6.03	6.14	4.08	5.98	5.27	5.7	7.53	5.53	4.39
Merged-chr18-35563281-1	chr18	35563181	35563381	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010771, intron 1 of 14)	intron (NM_010771, intron 1 of 14)	1123.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	2.83	3.52	1.14	2.41	5.73	5.33	2.99	4.68	9.05	1.51	9.55	3.76
Merged-chr10-6462371-1	chr10	6462271	6462471	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-296222.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.65	7.55	2.28	4.42	4.09	3.45	4.65	7.29	0.0	0.0	0.0	0.31
Merged-chr8-70545934-1	chr8	70545834	70546034	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	6259.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.81	0.75	1.71	0.8	1.23	3.45	5.65	0.76	5.51	1.0	5.02	2.19
Merged-chr16-85305147-2	chr16	85305041	85305241	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-131434.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.27	1.51	0.0	9.65	1.64	0.0	1.33	2.64	7.08	8.54	23.62	8.14
Merged-chr11-103985369-1	chr11	103985269	103985469	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001304574)	TTS (NM_001304574)	18498.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.81	2.01	0.0	1.21	5.32	4.39	0.33	5.38	2.36	4.02	3.01	5.64
Merged-chr19-25050950-1	chr19	25050850	25051050	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	51421.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.63	3.02	1.14	0.4	2.86	4.7	3.65	1.26	1.57	2.51	1.0	2.51
Merged-chr5-112153991-1	chr5	112153891	112154091	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-52772.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	3.23	4.02	2.28	1.21	4.91	5.64	0.66	3.14	9.05	7.03	4.52	6.58
Merged-chr17-86754477-1	chr17	86754377	86754577	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	CpG	613.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.63	2.01	0.0	5.23	3.27	6.59	4.98	3.22	7.67	3.51	5.02	8.77
Merged-chr2-129598567-1	chr2	129598467	129598667	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	3105.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.85	2.52	2.28	1.21	2.05	6.27	1.99	4.23	3.93	3.01	2.01	9.08
Merged-chr6-26393116-1	chr6	26393016	26393216	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	461690.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	1.26	5.7	4.83	6.95	1.25	11.29	5.83	2.95	5.02	5.02	6.27
Merged-chr12-8771692-1	chr12	8771592	8771792	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011519, exon 1 of 5)	exon (NM_011519, exon 1 of 5)	296.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.81	6.54	0.0	2.82	6.55	5.96	6.64	2.89	8.85	2.51	4.52	5.95
Merged-chr5-146778440-1	chr5	146778340	146778540	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	16516.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.23	1.51	0.57	1.21	2.05	1.88	5.31	2.78	8.46	2.51	3.01	2.19
Merged-chr13-49195753-1	chr13	49195653	49195853	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013610, exon 4 of 4)	3' UTR (NM_013610, exon 4 of 4)	8206.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	2.42	0.75	1.14	0.8	2.45	8.15	3.32	2.5	2.95	1.0	4.52	4.39
Merged-chr2-173388414-1	chr2	173388314	173388514	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-111881.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.4	0.75	3.42	3.22	6.14	0.94	1.33	4.46	2.75	3.01	3.01	2.19
Merged-chr11-100745290-1	chr11	100745190	100745390	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081194, exon 14 of 17)	exon (NM_001081194, exon 14 of 17)	-7075.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	3.63	3.02	1.71	1.61	4.09	5.02	2.33	3.56	10.42	5.02	5.02	2.82
Merged-chr4-149806855-1	chr4	149806755	149806955	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32588.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.04	4.28	2.28	10.05	6.14	5.64	2.33	3.56	8.85	4.02	15.07	4.07
Merged-chr15-78245751-1	chr15	78245651	78245851	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	940.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	1.62	5.03	0.0	8.45	3.68	3.14	5.98	2.13	2.95	1.0	2.01	1.25
Merged-chr9-22122256-1	chr9	22122156	22122356	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5061.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	5.65	1.26	4.56	0.0	3.68	4.7	3.32	4.37	6.29	4.02	5.02	5.33
Merged-chr12-35607909-1	chr12	35607809	35608009	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72920.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.81	2.52	1.14	0.4	3.27	4.7	1.33	4.71	4.52	3.01	0.5	0.0
Merged-chr10-125316780-1	chr10	125316680	125316880	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	ID_B1|SINE|B4	-7964.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	1.21	2.01	2.28	2.41	1.23	1.25	2.33	4.51	2.36	2.51	4.02	3.45
Merged-chr12-81483835-1	chr12	81483735	81483935	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001309847, intron 3 of 5)	intron (NM_001309847, intron 3 of 5)	1016.0	NR_132135	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	8.48	8.55	7.42	7.24	0.82	5.02	2.33	1.54	7.08	11.05	3.01	1.57
Merged-chr2-128699359-1	chr2	128699259	128699459	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	444.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	9.29	2.01	1.71	6.03	9.0	13.48	6.64	10.6	5.9	2.51	8.54	3.13
Merged-chr4-11191782-1	chr4	11191682	11191882	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	73.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	7.67	11.07	10.84	14.48	13.09	8.15	5.31	6.59	12.78	9.04	21.61	7.83
Merged-chr8-27087469-1	chr8	27087369	27087569	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	1628.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	3.23	5.53	5.13	2.41	3.27	7.53	1.0	4.18	1.38	2.51	3.01	0.94
Merged-chr5-96941406-1	chr5	96941306	96941506	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20134.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.63	2.52	2.28	3.62	1.23	6.9	8.3	3.93	3.15	7.53	10.05	1.57
Merged-chr8-71462947-1	chr8	71462847	71463047	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022419, intron 1 of 4)	intron (NM_022419, intron 1 of 4)	710.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	6.06	1.01	0.0	3.62	2.86	4.08	1.99	0.98	14.95	4.52	2.01	7.83
Merged-chr5-24389222-1	chr5	24389122	24389322	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2921.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	7.67	3.52	6.28	8.85	6.55	8.78	6.64	3.7	5.9	7.53	7.03	5.01
Merged-chr2-52419503-1	chr2	52419403	52419603	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	5371.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	6.46	3.02	0.0	0.0	7.36	6.9	1.33	4.57	4.72	5.02	4.02	8.14
Merged-chr14-76237583-1	chr14	76237483	76237683	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13879.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	5.65	9.31	8.56	0.0	4.09	5.64	10.96	4.35	5.9	13.05	8.04	4.7
Merged-chr5-67831420-1	chr5	67831320	67831520	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	16011.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.63	2.77	5.7	3.22	5.32	5.33	2.66	7.09	8.06	4.52	10.05	5.01
Merged-chr8-22423467-1	chr8	22423367	22423567	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020560, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	12127.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	7.27	6.04	2.28	3.22	4.5	5.33	2.33	8.52	8.46	8.54	8.54	4.7
Merged-chr1-23482151-1	chr1	23482051	23482251	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-92436.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	0.0	0.0	1.14	0.0	0.82	7.21	1.0	4.21	1.18	4.02	1.51	2.82
Merged-chr11-106475481-1	chr11	106475381	106475581	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	12315.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.23	2.26	3.42	2.01	5.73	3.76	4.65	4.57	1.97	4.02	5.02	2.82
Merged-chr11-102440448-1	chr11	102440348	102440548	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199200, intron 3 of 7)	intron (NM_199200, intron 3 of 7)	7215.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	4.04	3.27	1.14	2.41	0.82	8.15	1.66	1.65	6.1	8.54	6.53	4.7
Merged-chr8-95915143-1	chr8	95915043	95915243	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26778.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	4.85	3.02	3.99	3.22	6.95	2.82	2.99	2.94	8.46	3.51	6.53	3.45
Merged-chr6-17633957-1	chr6	17633857	17634057	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3053.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.04	4.02	3.42	1.61	2.86	3.45	7.97	5.41	3.34	4.02	3.52	4.07
Merged-chr9-45263282-2	chr9	45263119	45263319	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136903, intron 4 of 5)	B4A|SINE|B4	3488.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	4.44	6.54	4.56	4.42	3.27	5.64	3.99	1.01	4.72	7.03	1.0	5.64
Merged-chr13-119724588-1	chr13	119724488	119724688	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175538, intron 2 of 3)	intron (NM_175538, intron 2 of 3)	31294.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.0	2.26	0.57	0.0	0.0	2.51	3.99	0.95	1.57	0.0	0.0	3.13
Merged-chr10-42176310-1	chr10	42176210	42176410	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	100432.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	3.77	3.42	2.01	0.82	4.39	4.98	4.79	2.56	4.52	3.52	2.19
Merged-chr10-81129904-1	chr10	81129804	81130004	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6367.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	11.31	8.55	1.71	3.22	3.68	4.39	3.99	2.5	8.85	13.05	9.04	2.19
Merged-chr7-63913747-1	chr7	63913647	63913847	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-3110.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.44	5.03	3.99	3.22	3.68	4.08	1.0	4.65	6.1	3.51	3.52	4.7
Merged-chr10-42161884-1	chr10	42161784	42161984	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BGLII_Mur|LTR|ERVK	114858.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	5.28	1.14	0.0	2.86	3.14	6.64	3.67	2.95	0.0	2.51	1.57
Merged-chr2-31470225-1	chr2	31470125	31470325	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007494)	promoter-TSS (NM_007494)	-45.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	10.5	7.04	6.28	6.44	4.09	3.45	2.66	2.69	5.51	3.51	6.53	2.82
Merged-chr16-18406108-1	chr16	18406008	18406208	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007744)	TTS (NM_007744)	7386.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.04	3.52	5.13	5.63	3.68	3.14	5.31	7.07	1.18	5.02	6.53	3.45
Merged-chrX-102067372-1	chrX	102067272	102067472	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278534, intron 1 of 1)	intron (NM_001278534, intron 1 of 1)	3935.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	4.85	2.77	2.28	4.83	6.55	6.9	7.31	2.66	3.34	4.52	7.54	2.51
Merged-chr6-15730371-1	chr6	15730271	15730471	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	9710.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	2.01	0.0	0.0	3.27	5.33	4.65	4.29	4.92	3.51	6.03	3.76
Merged-chr13-102644989-1	chr13	102644889	102645089	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48558.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.23	11.07	1.14	4.02	4.91	7.53	2.99	3.87	2.56	5.02	7.03	4.07
Merged-chr10-94844947-1	chr10	94844847	94845047	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018797, intron 12 of 30)	intron (NM_018797, intron 12 of 30)	99631.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	6.06	3.77	6.85	8.04	6.14	6.59	3.32	4.54	6.29	2.01	11.05	9.71
Merged-chr13-63573576-1	chr13	63573476	63573676	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001328514)	promoter-TSS (NM_001328514)	-116.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.42	3.52	1.14	7.24	2.86	2.2	5.65	4.32	8.65	1.51	4.52	3.13
Merged-chr7-71867305-1	chr7	71867205	71867405	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42390.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.23	1.26	0.57	1.61	4.91	5.33	1.66	3.7	1.77	0.0	4.52	0.0
Merged-chr9-25549311-1	chr9	25549211	25549411	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	67714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.81	2.26	5.7	2.01	4.91	4.7	4.65	6.76	8.85	7.53	4.02	5.01
Merged-chr6-4808304-1	chr6	4808204	4808404	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60998.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	2.42	5.79	2.85	1.21	2.45	5.64	3.99	3.53	0.79	1.51	0.0	1.88
Merged-chrX-18191049-1	chrX	18190949	18191149	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310444, intron 2 of 28)	RSINE1|SINE|B4	28474.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	5.65	2.01	6.85	2.41	5.73	5.33	0.66	5.92	9.24	1.51	8.54	1.88
Merged-chr17-63450471-1	chr17	63450371	63450571	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	50109.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	5.65	6.54	6.85	3.22	3.27	1.88	0.0	1.15	8.26	1.51	3.52	1.57
Merged-chr4-149701974-1	chr4	149701874	149702074	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	-345.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0.81	3.52	3.99	1.61	3.27	8.47	1.66	4.01	2.95	3.01	7.03	2.82
Merged-chrX-7818047-1	chrX	7817947	7818147	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290455, exon 23 of 26)	exon (NM_001290455, exon 23 of 26)	-5712.0	NM_008423	16506.0	Mm.335968	NM_008423	ENSMUSG00000009731	Kcnd1	1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1	potassium voltage-gated channel, Shal-related family, member 1	protein-coding	4.85	7.04	9.13	4.02	1.64	4.08	3.32	4.01	6.49	5.02	4.52	3.13
Merged-chr11-59885878-1	chr11	59885778	59885978	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-35621.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	7.67	3.27	2.85	8.85	1.23	1.25	0.0	0.67	0.0	0.0	0.5	0.0
Merged-chr13-58020596-1	chr13	58020496	58020696	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001195075, intron 10 of 16)	intron (NM_001195075, intron 10 of 16)	2604.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	8.08	4.28	5.7	10.86	1.64	0.94	1.66	5.75	5.31	2.51	8.04	3.76
Merged-chr12-20234240-1	chr12	20234140	20234340	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	581539.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	8.48	5.53	0.0	5.63	2.86	1.88	1.99	1.88	0.79	4.02	3.52	7.52
Merged-chr6-83965327-1	chr6	83965227	83965427	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355286, intron 16 of 26)	intron (NM_001355286, intron 16 of 26)	-43271.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	1.62	3.77	6.85	8.85	5.73	1.57	0.0	3.0	9.05	5.02	6.53	7.21
Merged-chr5-125270794-1	chr5	125270694	125270894	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70300.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.04	3.02	1.14	2.82	9.82	4.39	5.98	3.7	11.41	17.57	8.54	5.64
Merged-chr5-108628409-1	chr5	108628309	108628509	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	1368.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.0	1.76	4.56	4.42	0.82	1.88	4.32	4.68	4.13	2.51	5.02	4.7
Merged-chr6-131022417-1	chr6	131022317	131022517	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	224945.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.81	5.28	6.85	2.82	5.32	7.53	9.3	4.01	3.74	0.5	1.0	3.76
Merged-chr1-39768044-1	chr1	39767944	39768144	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	37288.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	1.62	2.26	1.14	2.41	2.05	6.27	2.66	4.49	12.59	6.03	3.01	2.82
Merged-chr1-30920881-1	chr1	30920781	30920981	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28829.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	4.04	1.76	2.28	1.21	0.82	2.2	0.0	1.26	7.47	7.03	4.52	6.27
Merged-chr2-34371792-1	chr2	34371692	34371892	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_016768, exon 1 of 9)	exon (NM_016768, exon 1 of 9)	253.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	5.65	6.54	4.56	7.24	5.32	5.02	5.65	3.31	6.29	3.01	8.04	5.64
Merged-chr14-121879569-1	chr14	121879469	121879669	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_130999)	promoter-TSS (NR_130999)	-161.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	7.67	7.55	0.57	4.83	6.14	4.39	2.99	2.8	10.82	3.51	4.52	3.45
Merged-chr9-83691854-1	chr9	83691754	83691954	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046066, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	379.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	3.23	2.26	5.7	2.41	2.45	6.9	5.98	4.37	6.88	2.01	3.01	3.76
Merged-chr19-28986323-1	chr19	28986223	28986423	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-4029.0	NM_001302382	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	2.83	1.01	3.42	3.22	6.55	1.88	2.66	5.92	1.38	3.51	2.01	1.57
Merged-chr8-72316765-1	chr8	72316665	72316865	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2297.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.21	1.01	0.0	0.8	4.09	5.33	3.65	5.16	3.34	2.01	2.51	4.39
Merged-chr10-94486736-1	chr10	94486636	94486836	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MLT1K|LTR|ERVL-MaLR	-28121.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	1.21	0.5	1.14	1.61	6.95	5.33	3.32	4.82	4.13	4.02	4.02	5.95
Merged-chr15-25959523-1	chr15	25959423	25959623	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	11296.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	3.63	3.02	6.28	2.82	4.91	4.7	5.98	5.41	3.93	3.01	3.01	2.19
Merged-chr4-145283595-1	chr4	145283495	145283695	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	31552.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.25	0.0	0.8	4.5	6.27	4.65	4.46	0.79	0.0	3.52	1.25
Merged-chr16-76054464-1	chr16	76054364	76054564	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53680.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.4	2.01	0.57	2.01	4.5	2.51	1.99	0.79	0.59	2.01	0.5	1.57
Merged-chr13-29857595-1	chr13	29857495	29857695	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1922.0	NM_144536	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	5.25	4.53	3.99	1.21	7.77	7.21	2.66	4.99	6.1	3.51	6.03	2.19
Merged-chr7-66233259-1	chr7	66233159	66233359	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	123744.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.65	7.04	9.13	8.04	2.45	1.25	1.33	1.21	4.33	2.01	0.0	5.95
Merged-chr8-80950981-1	chr8	80950881	80951081	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63925.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.83	1.51	6.85	6.44	2.45	8.78	4.32	3.64	3.54	4.02	1.0	4.39
Merged-chr10-127426918-1	chr10	127426818	127427018	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	6051.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	6.06	3.52	2.28	4.02	5.73	4.39	0.0	3.81	9.24	2.01	4.02	6.27
Merged-chr3-60590680-1	chr3	60590580	60590780	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	89501.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.06	2.01	3.99	4.42	6.55	1.57	1.66	4.79	11.6	5.52	4.52	5.01
Merged-chr14-62077061-1	chr14	62076961	62077161	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	215918.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.23	5.03	3.99	2.41	3.68	1.25	1.33	4.32	2.16	7.03	5.53	0.31
Merged-chr12-84774078-1	chr12	84773978	84774178	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	808.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	2.42	3.52	3.99	0.0	3.68	4.39	5.65	4.26	4.52	4.02	6.03	1.88
Merged-chr15-66578615-1	chr15	66578515	66578715	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081409, intron 1 of 20)	intron (NM_001081409, intron 1 of 20)	1043.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	2.83	1.26	0.57	4.02	1.23	3.45	4.98	4.15	3.34	5.02	4.52	3.45
Merged-chr18-62068200-2	chr18	62068095	62068295	+	555.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	111786.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.25	4.02	4.56	8.85	8.18	7.53	2.99	4.09	6.88	8.54	15.07	5.95
Merged-chr4-137968370-2	chr4	137968271	137968471	+	555.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25085.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.85	5.03	9.7	4.83	6.14	4.7	1.66	1.85	8.46	12.05	8.04	5.64
Merged-chr8-13164519-1	chr8	13164419	13164619	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	5358.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.46	3.52	2.28	8.45	8.59	4.08	2.66	4.49	5.11	4.52	8.04	6.27
Merged-chr17-28909457-1	chr17	28909357	28909557	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172450, exon 2 of 12)	exon (NM_172450, exon 2 of 12)	4192.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	4.04	3.52	2.85	0.0	4.91	8.47	0.66	4.54	7.47	3.51	12.56	4.07
Merged-chr15-98513832-2	chr15	98513738	98513938	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	5996.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	5.25	2.52	0.0	2.01	2.05	6.9	5.31	4.21	7.08	13.05	7.03	6.89
Merged-chr15-64068472-1	chr15	64068372	64068572	+	555.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8024.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.04	4.02	2.85	6.44	4.91	6.9	7.97	3.39	2.95	8.54	12.06	7.83
Merged-chr11-106008047-2	chr11	106007956	106008156	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037712)	promoter-TSS (NM_001037712)	-147.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	5.25	1.01	6.28	0.0	7.77	3.76	8.64	4.37	7.67	6.53	8.54	2.82
Merged-chr14-8174852-1	chr14	8174752	8174952	+	555.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1860.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	3.63	4.78	4.56	4.02	1.23	4.39	1.33	2.94	8.65	11.55	11.56	5.64
Merged-chr8-122284253-2	chr8	122284164	122284364	+	555.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009569, intron 1 of 9)	CpG	2123.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.65	3.52	9.7	7.24	7.36	5.64	3.99	3.62	2.75	5.02	5.53	3.13
Merged-chr8-106169806-1	chr8	106169706	106169906	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357381, intron 1 of 9)	intron (NM_001357381, intron 1 of 9)	885.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	3.23	5.03	4.56	0.8	6.55	14.11	1.33	4.46	6.1	7.53	14.07	6.58
Merged-chr11-86999718-1	chr11	86999618	86999818	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5956.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.27	2.52	2.28	4.02	13.09	10.35	1.33	4.49	5.7	2.01	5.53	1.88
Merged-chr10-61069416-1	chr10	61069316	61069516	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19915.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	2.83	9.31	5.7	1.21	4.5	5.02	3.99	5.97	4.92	4.52	7.03	4.7
Merged-chr2-6872792-1	chr2	6872692	6872892	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-757.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.83	3.27	1.14	3.62	2.86	5.64	1.99	3.84	3.15	4.02	3.01	2.19
Merged-chr4-9337618-1	chr4	9337518	9337718	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355183, intron 2 of 5)	intron (NM_001355183, intron 2 of 5)	68301.0	NM_028940	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.02	3.02	6.85	4.02	2.05	5.02	1.0	6.39	1.57	2.01	2.51	6.58
Merged-chr8-123015262-1	chr8	123015162	123015362	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	27022.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.65	3.52	3.42	4.02	5.32	7.53	3.99	5.47	5.31	7.53	0.0	0.0
Merged-chr16-89994090-2	chr16	89993976	89994176	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19377.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	6.46	3.02	2.85	6.84	1.23	2.2	5.98	6.2	0.79	5.02	9.55	1.25
Merged-chr5-99371755-1	chr5	99371655	99371855	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-118828.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.62	3.02	1.14	4.42	2.05	3.76	5.31	4.04	4.13	1.51	8.04	1.57
Merged-chr1-85899460-1	chr1	85899360	85899560	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	4950.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	4.04	1.76	1.71	0.8	6.14	4.08	2.66	4.37	8.65	12.05	8.54	7.83
Merged-chr2-4569332-1	chr2	4569232	4569432	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	9578.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.23	3.27	4.56	5.63	4.91	0.63	2.66	5.3	2.75	4.02	1.51	2.51
Merged-chr14-20845469-1	chr14	20845369	20845569	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8807.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.65	8.05	0.57	1.21	3.68	8.47	7.31	4.99	5.31	11.05	6.53	1.57
Merged-chr18-57132942-1	chr18	57132842	57133042	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001979)	promoter-TSS (NM_001001979)	-148.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.4	0.0	1.14	0.0	0.82	0.31	3.99	2.66	2.95	2.51	5.02	8.77
Merged-chr9-96503498-1	chr9	96503398	96503598	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24823.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	1.62	4.02	3.99	2.82	2.86	3.14	1.99	7.85	4.92	5.02	12.06	7.52
Merged-chrX-96135048-1	chrX	96134948	96135148	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	39003.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	6.46	2.01	6.85	5.63	3.68	6.27	4.32	3.93	5.7	3.51	7.03	5.95
Merged-chr7-101999641-1	chr7	101999541	101999741	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	18514.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.83	1.76	6.85	8.04	4.5	3.76	1.99	5.66	5.9	0.5	8.04	6.89
Merged-chr3-76005866-1	chr3	76005766	76005966	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48917.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	1.62	0.0	0.0	0.0	1.23	1.57	1.99	5.02	2.36	1.0	5.02	1.57
Merged-chr14-27186430-1	chr14	27186330	27186530	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42437.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.44	2.77	2.85	3.62	6.55	0.31	1.0	4.21	1.38	3.01	3.52	4.07
Merged-chr11-114980335-1	chr11	114980235	114980435	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	9551.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.4	1.01	0.0	0.0	12.27	10.66	4.65	1.88	0.59	0.0	0.0	0.0
Merged-chr3-106789079-1	chr3	106788979	106789179	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1070.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	2.42	5.03	1.14	8.85	3.68	5.33	2.33	4.23	5.51	2.01	6.53	3.76
Merged-chr8-123034812-1	chr8	123034712	123034912	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	B3A|SINE|B2	7472.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.85	6.04	2.28	3.22	4.91	4.39	4.65	4.04	9.05	4.52	2.51	0.63
Merged-chr12-69791312-1	chr12	69791212	69791412	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	-605.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	1.62	2.77	2.85	0.4	2.05	3.14	4.65	4.04	2.95	4.52	4.02	1.88
Merged-chr1-181245746-1	chr1	181245646	181245846	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33768.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.46	4.53	7.42	2.82	3.27	8.15	1.66	4.21	5.31	2.01	4.52	4.39
Merged-chr15-66904461-1	chr15	66904361	66904561	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	13068.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	7.67	1.76	3.99	1.61	3.27	5.33	2.33	6.31	5.31	2.01	9.55	6.27
Merged-chr7-3646143-1	chr7	3646043	3646243	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	874.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	6.06	3.52	6.85	6.03	6.55	3.76	4.32	3.25	6.29	8.03	5.02	9.4
Merged-chr6-54680844-1	chr6	54680744	54680944	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	-780.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.42	2.26	4.56	1.61	3.27	4.39	0.66	4.35	2.36	0.0	1.51	2.82
Merged-chr16-57398830-1	chr16	57398730	57398930	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	45553.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.88	2.52	5.13	1.61	6.14	7.53	0.0	4.43	13.57	4.02	6.53	7.83
Merged-chr2-90578632-1	chr2	90578532	90578732	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2015.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.21	4.02	4.56	3.22	1.23	6.59	8.97	1.68	11.21	14.06	5.02	4.07
Merged-chr9-37605887-1	chr9	37605787	37605987	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011449, intron 3 of 4)	intron (NM_011449, intron 3 of 4)	7833.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	4.85	6.54	5.7	7.24	6.95	5.96	4.65	13.46	4.72	4.02	18.59	6.58
Merged-chr1-75141185-1	chr1	75141085	75141285	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026977, intron 3 of 9)	intron (NM_026977, intron 3 of 9)	506.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	3.23	3.27	2.85	0.4	4.5	3.14	4.65	8.1	7.08	2.51	6.53	7.83
Merged-chr9-119087737-1	chr9	119087637	119087837	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	524.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	2.02	3.27	1.14	1.61	1.64	1.57	2.99	3.5	8.65	3.51	3.52	5.64
Merged-chr16-3745735-1	chr16	3745635	3745835	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1636.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	2.52	3.42	0.4	2.86	5.33	1.0	3.25	2.95	2.01	2.51	2.51
Merged-chr11-70150427-1	chr11	70150327	70150527	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16196.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	7.27	7.8	3.99	4.83	1.64	4.7	1.99	3.17	6.88	2.01	4.52	1.25
Merged-chr9-114651210-1	chr9	114651110	114651310	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11010.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.0	0.0	1.14	0.0	0.0	0.0	0.0	1.12	8.06	1.0	7.54	5.01
Merged-chr16-56031066-1	chr16	56030966	56031166	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1349.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	2.42	3.27	2.85	2.01	6.55	1.88	0.0	5.66	3.15	3.01	3.52	2.19
Merged-chr10-78264934-1	chr10	78264834	78265034	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20292.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	3.23	3.02	1.14	2.41	4.09	5.02	6.64	4.99	4.72	3.51	6.53	5.01
Merged-chr5-110178036-1	chr5	110177936	110178136	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347389, intron 1 of 23)	intron (NM_001347389, intron 1 of 23)	1179.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	2.42	3.02	1.14	0.4	0.0	0.63	4.32	3.87	5.9	0.0	2.01	4.39
Merged-chr11-116626937-1	chr11	116626837	116627037	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	82.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	1.62	5.03	2.28	0.4	3.27	9.72	5.98	4.15	6.49	5.02	10.05	6.89
Merged-chr5-3772191-1	chr5	3772091	3772291	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003909, intron 2 of 19)	intron (NM_001003909, intron 2 of 19)	596.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	1.62	6.29	3.99	3.22	3.27	4.39	3.32	5.38	4.13	6.53	3.01	5.64
Merged-chr1-43936166-1	chr1	43936066	43936266	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2172.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	4.44	6.29	2.28	3.22	4.91	2.82	1.99	5.3	7.67	5.02	5.53	3.45
Merged-chr17-80205767-1	chr17	80205667	80205867	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360435, intron 2 of 6)	intron (NM_001360435, intron 2 of 6)	1538.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	3.63	2.26	0.57	4.42	4.91	1.25	0.66	3.98	5.31	2.51	6.03	3.45
Merged-chr11-98936681-1	chr11	98936581	98936781	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1015.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.42	2.52	1.14	0.4	0.82	3.76	4.65	4.26	5.9	4.02	4.52	5.64
Merged-chr6-145417107-1	chr6	145417007	145417207	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028742, intron 7 of 9)	intron (NM_028742, intron 7 of 9)	17818.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	2.83	3.02	2.85	0.8	2.05	1.88	4.65	4.15	1.77	2.01	2.01	3.13
Merged-chrX-143051700-1	chrX	143051600	143051800	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-47894.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	6.06	1.76	1.71	2.41	5.73	3.45	0.66	3.25	5.31	2.01	2.51	1.88
Merged-chr10-115245696-1	chr10	115245596	115245796	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	5797.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	3.23	5.79	2.28	0.0	4.5	5.96	3.65	5.05	5.31	3.01	2.01	5.33
Merged-chr6-86418864-1	chr6	86418764	86418964	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164078, intron 3 of 11)	intron (NM_001164078, intron 3 of 11)	14645.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	7.27	3.02	2.28	3.62	9.0	4.08	5.31	4.96	3.15	13.56	4.52	7.21
Merged-chr5-38086204-1	chr5	38086104	38086304	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	46974.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.42	1.26	1.71	4.02	3.27	1.25	1.0	0.87	8.06	7.03	11.05	5.01
Merged-chr5-102066658-1	chr5	102066558	102066758	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	3263.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.86	2.26	6.28	8.04	0.41	1.88	4.98	9.93	6.88	5.52	6.03	4.07
Merged-chr1-92902874-1	chr1	92902774	92902974	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172850)	promoter-TSS (NM_172850)	32.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	1.21	2.01	0.0	0.0	3.27	1.25	3.65	4.71	4.33	1.51	2.51	1.57
Merged-chr16-18235697-1	chr16	18235597	18235797	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-561.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	4.04	2.77	1.14	2.41	6.14	5.02	10.3	4.37	1.38	6.03	3.52	5.95
Merged-chr19-9100835-1	chr19	9100735	9100935	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-12879.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	1.62	3.27	3.99	4.02	2.45	3.14	3.99	4.93	8.06	0.0	7.03	4.7
Merged-chr7-19069031-1	chr7	19068931	19069131	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031255, intron 5 of 5)	(TTA)n|Simple_repeat|Simple_repeat	-7169.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.04	2.26	3.99	4.83	0.0	0.63	5.98	1.54	5.51	7.03	2.01	5.95
Merged-chr9-65534337-1	chr9	65534237	65534437	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	45750.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.42	7.04	10.84	2.01	6.95	3.14	0.0	1.96	1.97	7.03	4.02	5.01
Merged-chr1-59583517-1	chr1	59583417	59583617	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	59223.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	1.62	1.26	3.99	2.41	5.73	4.39	1.99	6.2	2.36	1.0	3.52	2.82
Merged-chr14-27347465-1	chr14	27347365	27347565	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	11428.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.85	4.78	2.28	0.0	10.64	4.7	6.98	1.57	11.8	8.54	5.02	2.51
Merged-chr15-39769115-1	chr15	39769015	39769215	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_022722, exon 10 of 10)	3' UTR (NM_022722, exon 10 of 10)	23185.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	1.21	3.02	4.56	1.21	5.32	4.39	0.66	4.85	3.93	2.51	8.54	3.45
Merged-chr15-13474465-1	chr15	13474365	13474565	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-300790.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.81	1.51	11.41	7.24	4.09	1.88	2.99	10.07	8.85	5.52	7.03	6.89
Merged-chr19-7295372-1	chr19	7295272	7295472	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001080390)	promoter-TSS (NM_001080390)	75.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	6.86	5.28	1.71	6.44	11.86	6.59	3.32	2.13	4.92	1.0	5.02	3.45
Merged-chr19-42751944-1	chr19	42751844	42752044	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029011, intron 1 of 15)	intron (NM_029011, intron 1 of 15)	831.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.81	6.29	3.99	8.85	1.23	4.39	2.66	2.69	1.77	3.01	4.52	2.82
Merged-chr16-90214188-1	chr16	90214088	90214288	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6554.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	4.04	3.02	2.85	1.61	2.86	4.39	0.66	4.29	6.49	2.51	5.53	2.82
Merged-chr10-99162123-1	chr10	99162023	99162223	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	53988.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	2.42	3.02	5.13	1.61	3.27	6.59	4.65	4.26	5.9	8.03	6.53	3.76
Merged-chr4-116669484-1	chr4	116669384	116669584	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16115.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	2.42	0.0	2.28	1.21	7.77	2.2	5.65	5.38	9.83	3.01	2.51	4.07
Merged-chr15-37674875-1	chr15	37674775	37674975	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	5699.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.81	2.26	0.0	1.61	0.0	0.0	1.99	1.07	6.29	2.01	7.54	3.13
Merged-chr12-36054774-1	chr12	36054674	36054874	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-12296.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	1.62	1.26	5.7	0.0	6.14	0.31	2.33	5.69	1.18	0.0	0.5	0.0
Merged-chr9-16381227-1	chr9	16381127	16381327	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2996.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.81	5.53	5.7	4.42	0.82	1.25	7.31	6.93	2.75	5.02	5.53	7.83
Merged-chr4-58441217-1	chr4	58441117	58441317	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037278)	promoter-TSS (NR_037278)	-119.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	4.04	3.52	5.13	4.02	3.27	2.51	3.99	3.2	5.11	2.01	7.03	3.13
Merged-chr6-42227470-1	chr6	42227370	42227570	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12142.0	NM_001001453	387515.0	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding	1.62	1.76	3.99	4.83	6.14	5.02	1.66	3.5	5.11	6.53	5.53	3.13
Merged-chr10-57761941-1	chr10	57761841	57762041	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22982.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	2.02	0.5	6.85	2.01	7.36	1.57	2.33	4.01	4.52	3.51	5.53	1.25
Merged-chr7-4777369-1	chr7	4777269	4777469	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290423, intron 1 of 4)	intron (NM_001290423, intron 1 of 4)	772.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	2.02	3.27	5.13	3.22	6.14	4.7	5.98	3.28	3.15	5.02	2.01	2.51
Merged-chr6-86517659-1	chr6	86517559	86517759	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	8530.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	6.86	7.04	6.28	8.45	2.45	1.88	0.0	1.29	2.36	1.0	0.0	0.63
Merged-chr19-10376859-1	chr19	10376759	10376959	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12231.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	4.85	2.77	5.7	5.23	4.91	3.14	1.99	3.76	7.08	7.03	8.04	6.27
Merged-chr15-52458945-1	chr15	52458845	52459045	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	163392.0	NM_172816	239436.0	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	2.42	4.78	6.85	5.23	2.45	5.02	3.99	4.4	1.77	4.52	9.04	1.57
Merged-chr3-121340519-1	chr3	121340419	121340619	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	48779.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	6.46	3.27	1.71	2.82	2.86	4.39	1.99	5.33	0.79	0.0	0.0	1.25
Merged-chr2-30753309-1	chr2	30753209	30753409	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32099.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	1.62	0.0	3.99	0.8	4.5	7.84	4.65	4.01	0.98	0.0	3.52	1.57
Merged-chr1-164014794-1	chr1	164014694	164014894	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	19905.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	1.21	4.02	2.28	1.21	7.77	2.82	1.0	4.49	2.36	3.01	8.04	3.76
Merged-chr19-40994777-1	chr19	40994677	40994877	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008528)	promoter-TSS (NM_008528)	-242.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.81	2.01	0.0	2.41	9.82	3.14	1.99	5.55	0.0	6.03	0.0	5.01
Merged-chrX-169862006-1	chrX	169861906	169862106	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	-17613.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	4.04	4.02	1.14	2.41	8.59	6.27	2.99	4.43	7.87	4.52	2.51	3.76
Merged-chr4-133346682-1	chr4	133346582	133346782	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7367.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	4.04	0.75	3.99	1.61	1.64	3.45	0.0	3.14	7.87	9.54	11.05	4.7
Merged-chr15-72874522-1	chr15	72874422	72874622	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-64198.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.25	1.26	1.71	4.02	4.91	6.59	3.32	9.14	6.49	6.03	6.53	6.27
Merged-chr1-191122053-1	chr1	191121953	191122153	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23639.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.23	0.75	0.0	3.22	6.95	2.51	5.65	4.79	1.57	2.01	1.51	1.57
Merged-chr7-75667741-2	chr7	75667632	75667832	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-180606.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.42	10.31	7.99	2.41	8.18	10.98	3.99	1.91	12.19	14.56	6.53	6.89
Merged-chr15-80014036-2	chr15	80013907	80014107	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011057, exon 1 of 7)	5' UTR (NM_011057, exon 1 of 7)	801.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	1.62	2.52	5.13	2.82	1.23	1.88	1.99	3.36	4.52	2.51	5.02	4.07
Merged-chr9-75436630-1	chr9	75436530	75436730	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4894.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	6.86	0.75	0.0	5.23	4.5	3.45	6.98	5.07	8.06	7.03	7.03	2.82
Merged-chr11-121260480-1	chr11	121260380	121260580	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080932, exon 1 of 9)	exon (NM_001080932, exon 1 of 9)	493.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	3.63	4.53	2.28	2.01	4.5	1.88	4.32	2.66	4.13	10.04	3.01	3.45
Merged-chr11-76901785-1	chr11	76901685	76901885	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2760.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	2.42	2.01	5.7	6.44	5.73	4.7	3.99	4.26	1.77	2.51	4.52	3.76
Merged-chr1-124077747-1	chr1	124077647	124077847	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32188.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	5.25	3.02	1.14	3.22	2.45	3.45	4.32	6.81	13.37	14.56	8.54	5.33
Merged-chr9-83616486-1	chr9	83616386	83616586	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68148.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.42	3.77	9.7	8.04	6.55	3.76	1.99	3.73	3.93	3.01	1.51	2.19
Merged-chr8-70885788-1	chr8	70885688	70885888	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053248, intron 13 of 14)	intron (NM_053248, intron 13 of 14)	6969.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	4.04	8.55	5.7	0.0	2.05	10.03	3.32	4.07	7.28	3.51	9.04	5.64
Merged-chr5-147450458-1	chr5	147450358	147450558	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	20302.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	2.83	5.03	0.0	0.8	5.73	1.88	3.65	4.23	2.36	0.5	5.02	2.51
Merged-chr10-81041767-1	chr10	81041667	81041867	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4436.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	3.63	5.53	0.0	0.8	5.32	7.21	1.0	1.01	7.87	1.51	3.01	1.57
Merged-chr18-4314769-2	chr18	4314682	4314882	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38171.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.86	5.53	2.28	5.23	7.36	2.82	3.99	4.79	9.64	7.03	3.01	6.58
Merged-chr5-62865728-1	chr5	62865628	62865828	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	RMER15|LTR|ERVL	51905.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.81	0.25	2.28	0.8	0.82	1.57	4.65	3.84	0.79	4.02	1.0	2.19
Merged-chr7-110921988-1	chr7	110921888	110922088	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194464, intron 9 of 20)	intron (NM_194464, intron 9 of 20)	17003.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.81	1.51	2.28	1.61	4.5	0.63	4.65	3.7	1.77	8.54	3.01	1.25
Merged-chr11-22632500-1	chr11	22632400	22632600	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	120217.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.81	1.01	0.0	3.22	5.73	2.82	4.98	5.24	2.95	6.03	5.02	3.13
Merged-chr5-86890243-1	chr5	86890143	86890343	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153598, exon 6 of 6)	3' UTR (NM_153598, exon 6 of 6)	16694.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	2.42	0.5	0.0	0.0	2.86	5.64	1.66	3.76	1.97	0.0	2.01	0.94
Merged-chr4-149901727-1	chr4	149901627	149901827	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029035, intron 2 of 2)	intron (NM_029035, intron 2 of 2)	53279.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.04	6.54	2.28	7.24	6.14	2.2	1.33	4.68	4.92	6.03	12.56	5.33
Merged-chr16-31016367-1	chr16	31016267	31016467	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	65065.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.85	6.04	2.28	7.24	9.41	9.72	1.66	5.05	4.33	9.04	1.0	5.95
Merged-chr4-102569215-1	chr4	102569115	102569315	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177980)	promoter-TSS (NM_001177980)	-845.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.42	0.5	0.0	1.21	8.18	2.51	3.99	3.7	7.47	3.51	2.01	0.0
Merged-chr3-20025729-1	chr3	20025629	20025829	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	9581.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	1.62	3.02	2.28	3.22	2.05	5.64	2.99	3.73	2.16	3.01	6.03	1.88
Merged-chr3-20006773-1	chr3	20006673	20006873	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001276248, exon 20 of 20)	3' UTR (NM_001276248, exon 20 of 20)	28537.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.25	1.14	1.21	2.45	2.82	4.65	6.56	2.56	4.02	3.52	3.13
Merged-chr17-88540581-1	chr17	88540481	88540681	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	10457.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.06	1.51	2.85	0.8	0.41	2.82	4.32	3.98	3.54	5.52	6.53	2.51
Merged-chr6-119220514-2	chr6	119220419	119220619	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033379, exon 9 of 9)	3' UTR (NM_001033379, exon 9 of 9)	-16007.0	NM_001033382	319734.0	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	10.5	4.02	11.41	4.02	7.36	6.27	3.99	12.42	9.64	6.53	7.03	9.4
Merged-chr5-90778529-1	chr5	90778429	90778629	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6094.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	4.85	3.77	6.85	3.62	6.55	6.27	5.98	3.95	4.72	1.51	5.02	2.82
Merged-chr4-48046762-1	chr4	48046662	48046862	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1457.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	5.65	3.52	2.85	0.8	5.73	3.45	3.99	4.32	2.95	5.02	3.52	6.89
Merged-chr3-94621906-1	chr3	94621806	94622006	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	36966.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0.81	1.51	1.14	1.21	4.91	5.33	4.98	3.84	1.18	2.01	0.0	0.94
Merged-chr13-24478936-2	chr13	24478893	24479093	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	63871.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	1.21	5.53	2.85	2.41	2.45	4.39	3.32	4.49	1.97	3.51	6.53	4.7
Merged-chr1-136129432-1	chr1	136129332	136129532	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_046167, exon 3 of 4)	non-coding (NR_046167, exon 3 of 4)	1751.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	6.46	4.02	3.42	0.8	6.14	10.03	4.65	4.77	6.29	13.56	5.53	5.95
Merged-chr7-99128765-1	chr7	99128665	99128865	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	12379.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.25	1.01	13.69	10.46	4.91	4.39	1.99	3.42	2.56	8.03	6.53	0.63
Merged-chr16-76354994-1	chr16	76354894	76355094	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	Lx9|LINE|L1	18055.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	7.27	6.54	4.56	4.83	4.91	2.2	5.31	5.86	6.88	5.02	3.01	4.07
Merged-chr4-41556752-1	chr4	41556652	41556852	+	554.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	12775.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.0	1.01	0.0	1.61	0.0	0.0	1.0	1.26	6.49	4.02	5.53	5.95
Merged-chr1-182909350-1	chr1	182909250	182909450	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45438.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.63	4.28	2.85	0.0	2.45	3.45	3.99	5.92	5.31	5.02	7.03	4.07
Merged-chr7-88260488-2	chr7	88260393	88260593	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17592.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	10.5	7.29	6.28	0.8	8.18	22.26	7.97	2.92	12.59	5.02	9.55	4.07
Merged-chr4-139609161-2	chr4	139609071	139609271	+	554.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-13723.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	8.08	3.02	8.56	7.24	5.73	4.39	3.65	2.41	8.06	7.53	15.58	7.21
Merged-chr15-93576020-1	chr15	93575920	93576120	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	19871.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	8.48	5.03	3.42	3.62	3.27	6.27	4.98	9.59	7.28	11.55	10.55	6.27
Merged-chr5-139253491-1	chr5	139253391	139253591	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	-6.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	2.42	0.5	0.57	2.01	6.14	2.82	4.65	3.34	1.77	1.51	6.03	5.01
Merged-chr18-20892408-1	chr18	20892308	20892508	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	intron (NM_177038, intron 1 of 28)	3670.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.81	1.26	5.7	4.83	4.91	1.88	1.99	6.14	4.13	6.53	7.54	2.82
Merged-chr1-191392698-1	chr1	191392598	191392798	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	4343.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	2.42	2.77	0.57	0.0	0.0	1.57	0.0	0.08	10.23	1.0	9.55	6.89
Merged-chr1-155462715-1	chr1	155462615	155462815	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45271.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	7.27	3.02	3.42	3.22	1.64	3.76	5.31	5.5	9.44	4.02	6.53	7.52
Merged-chr10-69250564-1	chr10	69250464	69250664	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	37370.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.06	4.28	2.28	1.21	3.68	5.64	2.66	2.89	19.47	10.04	7.03	4.07
Merged-chr19-37049187-1	chr19	37049087	37049287	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	123108.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	1.21	0.75	0.0	0.0	1.23	0.63	0.66	0.0	4.13	5.02	11.05	6.27
Merged-chrX-20817048-1	chrX	20816948	20817148	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31495.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	2.42	1.51	3.42	0.0	3.27	5.33	5.98	3.34	3.93	7.03	1.51	0.94
Merged-chr2-118677390-1	chr2	118677290	118677490	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145854, intron 1 of 9)	CpG	144.0	NM_001145854	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	5.25	6.54	5.7	0.8	0.82	4.39	0.33	2.21	4.33	3.51	2.51	4.39
Merged-chr3-144470587-1	chr3	144470487	144470687	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	99629.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	4.44	3.52	2.28	6.84	3.68	5.02	7.64	4.09	5.7	2.01	3.01	2.51
Merged-chr9-40747523-1	chr9	40747423	40747623	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-53750.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.02	1.51	2.85	3.22	2.05	7.21	6.98	4.77	0.59	0.5	2.01	0.0
Merged-chr10-98759193-1	chr10	98759093	98759293	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155449.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.65	2.77	2.85	2.01	6.14	2.2	1.99	4.12	3.93	12.55	3.52	2.19
Merged-chrX-169216392-1	chrX	169216292	169216492	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	-29183.0	NM_009666	11704.0	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	3.63	2.52	0.0	1.21	9.0	7.21	0.66	2.24	4.33	6.03	5.02	5.01
Merged-chr6-119472405-1	chr6	119472305	119472505	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5194.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.81	4.02	5.7	3.62	8.18	7.84	2.99	2.16	10.62	6.03	9.55	3.45
Merged-chr1-106961207-1	chr1	106961107	106961307	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19777.0	NM_172852	241196.0	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	6.46	2.52	0.0	0.0	2.45	1.25	4.65	5.36	5.31	4.02	5.53	1.25
Merged-chr11-58905022-1	chr11	58904922	58905122	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-797.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	8.48	8.8	1.71	2.82	7.77	9.72	2.99	2.02	9.83	9.54	8.04	0.94
Merged-chr8-95053959-1	chr8	95053859	95054059	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-1144.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	1.76	0.0	2.41	0.82	3.45	0.0	1.51	0.2	5.52	3.01	1.57
Merged-chr7-25627091-1	chr7	25626991	25627191	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-533.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	2.42	3.02	0.57	0.0	0.82	5.02	1.0	5.66	1.77	0.5	3.52	3.45
Merged-chr1-172305862-1	chr1	172305762	172305962	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6505.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.42	3.02	4.56	1.61	6.55	6.59	1.66	2.5	7.47	10.04	8.04	0.94
Merged-chr17-17867817-1	chr17	17867717	17867917	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-12629.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	2.83	1.76	3.42	1.61	4.09	2.2	5.31	6.06	1.38	4.02	3.01	6.27
Merged-chr1-16667852-1	chr1	16667752	16667952	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027415, intron 2 of 2)	Lx9|LINE|L1	2661.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	6.46	2.52	5.7	0.8	2.45	2.82	0.0	4.35	10.42	9.04	6.03	4.39
Merged-chr9-7261770-1	chr9	7261670	7261870	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10744.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	3.23	2.01	1.71	0.4	2.45	6.59	6.64	2.38	6.1	9.04	3.01	2.51
Merged-chr12-119237972-1	chr12	119237872	119238072	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_177290, exon 1 of 14)	5' UTR (NM_177290, exon 1 of 14)	304.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.4	6.04	3.42	3.62	4.5	4.39	6.98	5.07	1.57	6.03	3.01	2.82
Merged-chr1-180226668-1	chr1	180226568	180226768	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011183)	TTS (NM_011183)	19282.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	2.83	1.26	7.99	3.22	0.0	1.25	1.0	2.83	6.69	1.0	7.54	6.89
Merged-chr5-139355399-1	chr5	139355299	139355499	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160265, intron 4 of 8)	intron (NM_001160265, intron 4 of 8)	2782.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	4.85	3.52	3.42	5.63	6.55	7.53	0.66	3.53	3.93	4.02	4.02	6.58
Merged-chr4-132776944-1	chr4	132776844	132777044	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011284, intron 8 of 8)	intron (NM_011284, intron 8 of 8)	8584.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	6.06	4.53	9.7	3.62	2.86	5.64	1.33	2.41	9.83	4.02	7.54	6.89
Merged-chr10-95442481-1	chr10	95442381	95442581	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25106.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.81	3.27	1.14	2.01	3.27	4.08	4.98	3.67	2.16	6.53	3.01	4.07
Merged-chr1-154787836-1	chr1	154787736	154787936	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61916.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.23	1.51	0.0	1.61	4.09	4.7	1.33	4.32	5.9	8.54	6.53	4.07
Merged-chr11-98796625-1	chr11	98796525	98796725	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028722, intron 1 of 8)	intron (NM_028722, intron 1 of 8)	1109.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	3.23	1.51	2.85	2.01	5.32	3.45	3.32	2.89	7.67	4.02	9.55	6.27
Merged-chr4-42978293-1	chr4	42978193	42978393	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	8347.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	1.21	3.52	5.7	5.63	9.41	8.15	3.99	2.05	11.6	5.02	2.01	5.33
Merged-chr2-166154528-1	chr2	166154428	166154628	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355619, intron 1 of 21)	CpG	757.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.23	1.76	3.42	0.0	4.91	4.7	2.66	3.56	5.9	6.03	8.04	2.51
Merged-chr11-74650148-1	chr11	74650048	74650248	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	653.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	5.25	6.79	7.42	10.86	2.45	1.57	2.99	2.86	6.69	6.03	1.51	3.76
Merged-chr15-59077368-1	chr15	59077268	59077468	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	4658.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.06	1.76	3.42	2.41	12.68	3.76	4.65	4.26	1.97	2.01	2.01	2.82
Merged-chr12-69962618-1	chr12	69962518	69962718	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_036607)	promoter-TSS (NR_036607)	-791.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	3.63	2.01	1.14	0.4	4.09	2.82	3.99	4.79	7.28	3.01	2.51	2.19
Merged-chr9-52095883-1	chr9	52095783	52095983	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19740.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	3.23	2.52	3.42	4.02	3.27	5.02	3.99	5.02	1.77	2.51	4.02	2.51
Merged-chr17-27969965-1	chr17	27969865	27970065	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60659.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	2.83	2.52	6.28	0.8	1.23	2.82	5.31	3.98	1.97	2.01	1.0	1.57
Merged-chr2-160317978-1	chr2	160317878	160318078	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033411, intron 2 of 2)	intron (NM_001033411, intron 2 of 2)	9516.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.65	3.27	0.57	3.22	7.36	6.27	1.66	4.09	3.93	3.51	9.04	3.45
Merged-chr10-128409186-1	chr10	128409086	128409286	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-6.0	NM_001358973	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	1.21	0.75	0.0	4.83	0.0	3.14	1.66	2.69	4.92	2.51	3.01	7.52
Merged-chr11-95868734-1	chr11	95868634	95868834	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008081, intron 8 of 10)	intron (NM_008081, intron 8 of 10)	9917.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	6.06	7.8	3.42	4.83	1.23	6.27	5.65	2.02	0.2	1.0	0.0	2.19
Merged-chr11-83668315-1	chr11	83668215	83668415	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5731.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.23	5.03	3.42	2.82	1.64	9.41	4.98	0.39	3.34	7.03	1.0	0.31
Merged-chr2-103282533-1	chr2	103282433	103282633	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007914, intron 2 of 8)	intron (NM_007914, intron 2 of 8)	20663.0	NM_007914	13661.0	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	6.46	0.5	1.14	6.44	3.27	0.63	5.98	4.29	0.2	0.0	1.0	2.19
Merged-chr6-17728691-1	chr6	17728591	17728791	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	B3A|SINE|B2	-14901.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.81	0.75	4.56	2.82	4.91	0.94	1.99	2.3	0.0	2.51	0.5	0.31
Merged-chr1-37490990-1	chr1	37490890	37491090	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-2385.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	1.62	1.01	0.57	1.61	3.27	3.14	0.66	3.84	3.34	3.01	5.02	0.94
Merged-chr2-91459221-1	chr2	91459121	91459321	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172668, intron 1 of 37)	intron (NM_172668, intron 1 of 37)	1690.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.44	4.53	1.14	5.23	0.41	4.39	1.0	4.18	1.97	3.51	2.51	0.94
Merged-chrX-159840418-1	chrX	159840318	159840518	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135728)	promoter-TSS (NM_001135728)	-50.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	6.86	5.79	7.42	4.42	4.09	6.9	5.31	1.18	8.65	7.53	6.53	6.27
Merged-chr15-31347233-1	chr15	31347133	31347333	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	RMER19B2|LTR|ERVK	20526.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	3.23	2.01	1.14	0.4	1.64	0.0	4.65	3.87	0.79	1.51	3.52	0.63
Merged-chr8-11335478-1	chr8	11335378	11335578	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-22652.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	2.42	0.5	2.28	0.4	6.95	3.45	1.66	5.05	1.18	0.0	2.51	3.45
Merged-chr1-62719900-1	chr1	62719800	62720000	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16583.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.06	11.57	7.42	3.22	4.09	2.2	0.66	2.61	3.93	1.51	6.03	5.95
Merged-chr14-76899527-1	chr14	76899427	76899627	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137090.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	0.0	1.76	1.71	0.8	2.05	1.57	5.31	5.1	6.69	6.53	10.05	5.01
Merged-chr12-80791375-1	chr12	80791275	80791475	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	843.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	8.08	6.54	2.28	8.85	2.05	5.64	0.0	3.25	11.21	7.53	8.54	10.65
Merged-chr2-18205316-1	chr2	18205216	18205416	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010804, intron 17 of 22)	intron (NM_010804, intron 17 of 22)	140731.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.81	3.52	5.7	8.45	2.45	5.33	2.99	4.6	2.36	2.01	2.51	1.88
Merged-chr9-75437136-2	chr9	75437027	75437227	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4397.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	2.83	3.52	2.28	5.23	2.05	7.21	1.66	3.53	6.49	7.53	8.04	6.58
Merged-chr5-96996608-1	chr5	96996508	96996708	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1081.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	1.62	5.28	2.85	2.01	4.5	4.08	3.99	6.81	5.51	1.51	1.0	6.58
Merged-chr10-39246598-1	chr10	39246498	39246698	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82804.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	3.63	3.02	1.14	0.8	4.91	2.2	3.99	3.9	2.95	1.51	0.5	1.57
Merged-chr2-30801212-1	chr2	30801112	30801312	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198000, exon 1 of 7)	exon (NM_198000, exon 1 of 7)	525.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	3.63	2.52	4.56	3.22	4.5	5.96	4.98	3.73	2.95	7.03	4.02	9.08
Merged-chr11-115202486-2	chr11	115202397	115202597	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 6 of 9)	intron (NM_001033393, intron 6 of 9)	15010.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.06	3.52	3.42	2.41	5.32	0.63	2.99	3.79	7.08	3.51	7.54	9.08
Merged-chr8-122280828-1	chr8	122280728	122280928	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1313.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.44	2.01	4.56	0.8	7.36	3.14	3.99	2.36	2.95	7.03	10.05	7.52
Merged-chr13-60682430-1	chr13	60682330	60682530	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80219.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.42	1.26	0.0	0.0	1.64	0.94	4.98	4.43	7.67	3.51	0.5	5.01
Merged-chr15-31343821-1	chr15	31343721	31343921	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	23938.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.81	0.25	0.0	0.4	5.32	1.88	4.98	9.81	0.0	0.0	1.0	0.31
Merged-chr16-4551219-2	chr16	4551132	4551332	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031182, exon 4 of 7)	exon (NM_031182, exon 4 of 7)	8488.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	5.25	2.52	2.85	1.61	5.73	8.15	3.32	3.87	4.52	8.03	5.53	7.52
Merged-chr8-70820296-1	chr8	70820196	70820396	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008353, intron 15 of 15)	intron (NM_008353, intron 15 of 15)	11847.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	2.02	2.52	1.14	2.01	1.23	2.82	3.99	3.31	6.29	12.55	10.55	5.95
Merged-chr7-127948311-1	chr7	127948211	127948411	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1586.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	4.85	3.02	1.14	3.62	4.09	0.63	5.98	3.84	3.54	1.0	5.02	4.39
Merged-chr14-64638629-1	chr14	64638529	64638729	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-13902.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.4	1.01	11.41	2.01	2.45	4.7	3.32	7.15	10.23	5.52	2.01	2.51
Merged-chr11-20204144-1	chr11	20204044	20204244	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	2732.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.44	6.29	4.56	1.21	3.68	10.66	7.97	2.94	5.11	9.04	5.02	1.25
Merged-chr5-134704358-1	chr5	134704258	134704458	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007925, intron 36 of 36)	intron (NM_007925, intron 36 of 36)	-15768.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.85	4.78	8.56	4.02	2.86	9.09	3.99	5.21	7.47	6.03	4.02	5.64
Merged-chr1-131431620-3	chr1	131431539	131431739	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95722.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	8.48	5.79	5.7	0.8	5.73	11.29	5.31	3.25	10.82	5.52	7.54	5.64
Merged-chr19-40742072-1	chr19	40741972	40742172	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009848)	TTS (NM_009848)	82302.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.81	0.5	6.85	2.41	2.86	4.39	0.0	2.05	6.1	6.53	3.52	4.07
Merged-chr6-73223018-2	chr6	73222928	73223128	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1397.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	8.08	2.52	3.99	12.07	5.32	5.96	3.32	4.54	2.95	1.0	0.0	1.25
Merged-chr10-42093356-1	chr10	42093256	42093456	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74974.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	2.02	1.51	4.56	3.62	4.09	4.39	5.98	4.49	2.16	1.0	8.04	3.45
Merged-chr19-38930146-1	chr19	38930046	38930246	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-844.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	5.25	4.53	7.42	3.62	1.23	3.14	1.33	3.34	4.92	6.53	8.04	0.94
Merged-chr2-18916684-1	chr2	18916584	18916784	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81437.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.81	3.02	3.99	0.0	0.82	1.88	2.33	1.07	2.16	3.01	1.0	2.51
Merged-chr19-23893350-1	chr19	23893250	23893450	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177034, exon 2 of 13)	exon (NM_177034, exon 2 of 13)	134474.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	3.23	1.76	1.71	6.44	0.82	1.57	4.65	3.79	1.38	0.0	2.01	0.31
Merged-chr15-27520127-1	chr15	27520027	27520227	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	-51367.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	3.23	0.75	2.28	0.8	2.05	3.14	4.98	2.61	0.0	0.0	0.5	1.57
Merged-chr8-125514207-1	chr8	125514107	125514307	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-21374.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.4	0.0	0.0	0.8	0.82	0.0	0.0	0.03	7.08	4.02	5.02	6.89
Merged-chr11-26211977-1	chr11	26211877	26212077	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1401.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	17.77	4.28	9.7	8.04	6.14	4.08	2.99	3.36	6.69	3.01	2.01	4.39
Merged-chr19-6502162-1	chr19	6502062	6502262	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	40908.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	8.08	4.78	2.28	6.44	8.18	1.57	6.31	3.87	4.13	4.52	3.01	5.33
Merged-chr10-30673876-1	chr10	30673776	30673976	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	MER90|LTR|ERV1	-18009.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	1.21	0.75	0.0	3.22	2.05	2.82	3.32	3.11	7.08	3.51	5.53	1.25
Merged-chr16-21646195-1	chr16	21646095	21646295	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48470.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	2.52	1.14	0.4	3.68	7.53	4.32	3.93	4.13	0.5	1.51	1.25
Merged-chr15-6284764-1	chr15	6284664	6284864	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15025.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.85	2.01	5.13	1.61	4.09	1.57	5.65	4.54	2.95	9.54	3.01	5.64
Merged-chr9-122014481-1	chr9	122014381	122014581	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18455.0	NM_153540	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	7.27	8.3	3.42	4.02	1.64	3.76	8.64	3.22	5.7	1.0	4.02	3.76
Merged-chr15-98772786-1	chr15	98772686	98772886	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011718, exon 5 of 5)	exon (NM_011718, exon 5 of 5)	5364.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	3.63	7.55	1.71	7.24	6.14	1.57	3.99	5.07	3.15	3.01	3.01	5.01
Merged-chr12-32816161-1	chr12	32816061	32816261	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4174.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.86	3.52	4.56	2.82	0.82	4.39	2.66	3.67	2.95	2.51	4.52	1.57
Merged-chr14-30095601-1	chr14	30095501	30095701	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 28 of 46)	intron (NM_001083616, intron 28 of 46)	72968.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.4	0.0	2.28	0.8	0.0	0.0	0.66	0.0	7.47	1.51	13.06	8.46
Merged-chr1-171157239-1	chr1	171157139	171157339	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001315499, intron 1 of 5)	intron (NM_001315499, intron 1 of 5)	1721.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.81	1.51	1.71	0.0	1.23	5.64	0.66	4.07	4.72	2.51	2.51	3.45
Merged-chr8-70328898-1	chr8	70328798	70328998	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008107)	promoter-TSS (NM_008107)	-867.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.81	3.27	2.28	1.21	3.68	5.96	2.66	0.95	0.0	4.52	2.51	1.88
Merged-chr11-95729104-2	chr11	95729017	95729217	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5531.0	NR_028263	320616.0	Mm.428140	NM_177209	ENSMUSG00000075596	B130006D01Rik	-	RIKEN cDNA B130006D01 gene	ncRNA	1.21	7.29	9.13	0.8	11.86	5.64	1.33	2.27	8.26	5.02	9.55	6.58
Merged-chr6-124835386-1	chr6	124835286	124835486	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013530, intron 9 of 9)	intron (NM_013530, intron 9 of 9)	4889.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.81	1.01	3.42	2.41	6.55	1.25	11.63	0.93	2.56	1.51	3.52	0.94
Merged-chr12-32001853-1	chr12	32001753	32001953	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-51608.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.42	0.5	2.28	1.21	0.0	0.0	3.99	2.58	2.16	5.52	6.53	4.39
Merged-chr12-79725894-1	chr12	79725794	79725994	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	198839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.23	3.77	7.42	9.25	7.36	5.02	5.31	5.33	4.13	1.0	6.03	5.01
Merged-chr1-79820712-1	chr1	79820612	79820812	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009255, intron 2 of 8)	intron (NM_009255, intron 2 of 8)	37953.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.81	2.01	2.28	4.02	2.45	6.27	1.66	4.74	7.67	2.01	6.03	6.89
Merged-chr14-54423552-1	chr14	54423452	54423652	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3357.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	3.63	2.26	3.99	4.02	4.5	10.35	2.33	1.54	9.05	7.53	6.53	3.76
Merged-chr1-153746926-1	chr1	153746826	153747026	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2500.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	5.25	4.02	1.14	6.44	9.41	3.45	2.33	3.95	7.08	3.51	9.04	5.95
Merged-chr5-35718260-1	chr5	35718160	35718360	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359895, intron 5 of 17)	intron (NM_001359895, intron 5 of 17)	11016.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	2.02	2.01	0.0	0.0	1.64	4.39	0.33	4.43	2.16	5.02	1.51	1.88
Merged-chr1-171688554-1	chr1	171688454	171688654	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007649, intron 1 of 3)	L1_Mus2|LINE|L1	6562.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	8.48	13.08	4.56	4.02	5.32	9.09	4.32	1.96	8.65	6.03	8.04	3.13
Merged-chr14-122465118-1	chr14	122465018	122465218	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	540.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	6.06	5.03	2.85	2.01	6.14	3.76	1.66	3.17	6.69	3.01	9.55	6.27
Merged-chr2-157417415-1	chr2	157417315	157417515	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6878.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.85	5.79	16.54	0.0	1.64	6.27	2.33	1.15	10.42	7.03	3.01	3.76
Merged-chr8-68205591-1	chr8	68205491	68205691	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70937.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.85	6.54	0.57	4.02	2.45	1.25	4.32	3.7	12.78	6.03	3.01	3.13
Merged-chr9-30424436-1	chr9	30424336	30424536	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2893.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	5.25	6.79	2.85	2.01	3.27	5.64	3.99	4.54	5.31	2.51	7.03	4.07
Merged-chrX-77597836-1	chrX	77597736	77597936	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	ID_B1|SINE|B4	77616.0	NM_001101585	628893.0	Mm.477437	NM_001101585		Cldn34-ps	EG628893|Gm6927	claudin 34, pseudogene	protein-coding	4.04	2.01	2.85	7.24	2.05	1.25	4.98	9.5	3.93	1.51	7.54	3.13
Merged-chr13-52034250-1	chr13	52034150	52034350	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-62491.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.02	1.26	0.57	0.8	4.5	3.45	1.0	4.99	0.59	1.51	3.01	4.7
Merged-chr12-8511695-1	chr12	8511595	8511795	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	-11686.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.02	1.01	0.0	0.0	2.05	1.25	2.66	2.38	12.98	5.02	9.04	2.51
Merged-chr15-66676746-1	chr15	66676646	66676846	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 5 of 47)	intron (NM_009375, intron 5 of 47)	5976.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	3.23	3.77	5.7	1.61	4.5	3.76	1.99	4.82	7.08	1.51	2.01	8.77
Merged-chr5-137705421-1	chr5	137705321	137705521	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-20668.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.4	6.54	2.28	9.25	9.0	4.39	9.3	3.87	1.77	2.01	3.01	0.0
Merged-chr14-73509233-1	chr14	73509133	73509333	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-816.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	2.02	5.28	4.56	2.82	7.36	3.76	0.0	4.6	4.72	3.51	3.01	3.45
Merged-chr16-33937781-1	chr16	33937681	33937881	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29257.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.63	3.27	6.85	1.61	2.45	4.39	3.65	4.77	2.16	4.52	2.51	0.0
Merged-chr7-80172845-1	chr7	80172745	80172945	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13996.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.04	2.01	6.85	1.21	4.09	11.92	2.99	4.68	12.0	6.53	3.01	4.7
Merged-chr1-16675209-1	chr1	16675109	16675309	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027415, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	10018.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.0	1.01	0.0	1.21	0.82	1.25	0.0	1.07	3.93	3.51	10.55	9.71
Merged-chr17-65864894-1	chr17	65864794	65864994	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198949, intron 2 of 9)	intron (NM_001198949, intron 2 of 9)	20029.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	9.29	1.51	3.99	0.8	2.05	6.9	1.33	3.62	11.21	7.03	5.02	1.88
Merged-chr14-26579007-1	chr14	26578907	26579107	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-543.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	3.23	2.26	0.0	4.83	2.45	3.14	3.99	4.09	1.77	3.01	4.02	0.94
Merged-chr11-98747067-1	chr11	98746967	98747167	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5282.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	6.06	3.27	1.14	2.82	2.45	5.02	3.99	4.26	4.92	1.0	6.53	3.76
Merged-chr13-83131523-1	chr13	83131423	83131623	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-372511.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.81	2.52	2.28	2.82	0.82	0.0	5.98	6.14	2.95	1.51	1.51	3.13
Merged-chr8-36832047-1	chr8	36831947	36832147	+	553.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-98993.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.21	4.28	3.42	3.62	6.95	5.64	4.98	4.68	8.65	9.54	4.52	6.27
Merged-chr7-19821873-1	chr7	19821773	19821973	+	553.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	882.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	4.04	2.01	4.56	3.22	6.14	4.7	6.98	3.08	8.26	5.02	11.56	7.52
Merged-chr4-21931375-1	chr4	21931275	21931475	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175234)	promoter-TSS (NM_175234)	49.0	NM_175234	76132.0	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	4.85	3.77	0.0	2.82	5.32	1.57	3.99	5.13	2.95	2.01	3.52	2.82
Merged-chr9-110625039-2	chr9	110624937	110625137	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-644.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	3.63	6.54	1.14	4.02	2.45	5.02	3.32	3.76	5.31	8.54	13.57	0.94
Merged-chr11-76033553-1	chr11	76033453	76033653	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5771.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	5.65	1.26	11.98	0.0	5.73	5.96	4.32	7.63	2.16	6.03	1.0	4.07
Merged-chr8-125176538-1	chr8	125176438	125176638	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122343.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.81	0.5	0.0	1.61	6.95	5.02	2.66	4.79	0.2	0.0	0.0	0.31
Merged-chr7-83675771-2	chr7	83675680	83675880	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 6 of 18)	intron (NM_001360088, intron 6 of 18)	-20285.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.23	4.02	5.7	1.21	3.27	5.33	7.31	1.43	9.83	3.01	8.54	3.13
Merged-chr5-75151316-1	chr5	75151216	75151416	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347718)	promoter-TSS (NM_001347718)	-935.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	2.83	6.54	2.28	3.22	4.91	7.84	5.65	3.93	5.31	11.05	9.04	3.76
Merged-chr3-69006505-1	chr3	69006405	69006605	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356976, intron 2 of 23)	intron (NM_001356976, intron 2 of 23)	1767.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	5.65	1.51	4.56	4.83	4.91	5.64	6.31	4.99	5.51	5.52	10.55	4.7
Merged-chr4-34465068-1	chr4	34464968	34465168	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-85547.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	1.62	1.51	0.57	0.8	6.55	5.33	0.66	3.7	3.93	1.51	3.01	1.88
Merged-chr8-108692739-1	chr8	108692639	108692839	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21905.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.81	1.76	2.28	4.02	3.68	1.25	2.99	5.07	2.75	2.01	5.02	4.07
Merged-chr5-123884128-1	chr5	123884028	123884228	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4108.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	8.48	4.78	6.85	2.41	7.77	5.64	1.0	2.8	10.23	6.03	1.51	5.95
Merged-chr17-50122716-1	chr17	50122616	50122816	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	67781.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.83	1.01	1.14	2.41	4.91	5.33	1.0	4.01	2.56	0.0	4.52	1.88
Merged-chr9-108479918-1	chr9	108479818	108480018	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	56.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	2.02	7.04	0.0	3.22	4.5	5.02	3.65	3.98	5.9	2.01	0.5	5.33
Merged-chr6-94054128-1	chr6	94054028	94054228	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-140438.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	6.86	1.26	0.57	2.82	5.32	3.76	1.33	7.07	1.18	0.5	0.5	4.39
Merged-chr2-58477212-1	chr2	58477112	58477312	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355048, intron 5 of 10)	intron (NM_001355048, intron 5 of 10)	84198.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.85	4.53	3.99	3.62	8.59	3.45	2.33	3.73	6.69	3.51	5.53	4.7
Merged-chr13-91403284-1	chr13	91403184	91403384	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15199.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	1.21	1.51	2.28	0.8	2.45	9.41	1.0	3.67	3.34	2.51	2.01	2.51
Merged-chr3-138982464-1	chr3	138982364	138982564	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356388, intron 4 of 13)	B4A|SINE|B4	92737.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	2.77	5.7	7.64	6.14	1.25	1.99	6.45	2.56	3.51	2.51	1.57
Merged-chrX-167050410-1	chrX	167050310	167050510	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19960.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	6.86	5.53	3.99	6.84	2.05	5.64	1.99	9.59	4.33	7.53	2.01	5.01
Merged-chr4-11476327-1	chr4	11476227	11476427	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9631.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.04	2.77	3.42	1.61	0.0	2.82	3.99	1.37	12.39	2.51	9.55	0.94
Merged-chr8-105276498-1	chr8	105276398	105276598	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030152)	promoter-TSS (NM_030152)	51.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	3.23	3.27	2.28	4.42	2.45	2.51	4.65	4.01	4.13	1.51	1.51	2.51
Merged-chr15-43624610-1	chr15	43624510	43624710	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	147381.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	2.83	1.76	1.14	1.21	0.82	8.78	0.0	1.51	7.67	10.04	13.57	1.25
Merged-chr4-123664337-1	chr4	123664237	123664437	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1544.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	8.88	4.02	1.14	4.83	4.91	5.33	2.66	3.42	4.13	5.02	9.04	6.58
Merged-chr14-64901229-1	chr14	64901129	64901329	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 2 of 9)	intron (NM_177338, intron 2 of 9)	48628.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	1.21	5.28	4.56	3.22	0.82	1.88	0.66	2.83	6.88	16.07	10.05	5.95
Merged-chr17-75523924-1	chr17	75523824	75524024	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360103, intron 13 of 16)	intron (NM_001360103, intron 13 of 16)	28022.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	9.29	3.52	6.85	10.86	8.18	3.76	9.97	4.51	5.11	5.02	5.53	2.19
Merged-chr11-83630775-1	chr11	83630675	83630875	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18603.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	5.65	2.01	0.0	2.01	4.91	5.96	2.66	5.16	4.52	10.54	3.52	1.57
Merged-chr7-4518691-1	chr7	4518591	4518791	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009406, intron 7 of 7)	intron (NM_009406, intron 7 of 7)	-2716.0	NM_011618	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	3.23	1.76	1.14	4.02	3.27	6.9	3.65	3.62	5.11	4.02	7.54	5.95
Merged-chr5-45448877-1	chr5	45448777	45448977	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024236, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1352.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	8.08	6.04	4.56	6.44	2.05	5.33	6.31	6.62	6.69	3.51	5.53	3.76
Merged-chr4-133480688-1	chr4	133480588	133480788	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175307, intron 1 of 1)	intron (NM_175307, intron 1 of 1)	555.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	5.25	3.27	1.71	1.61	4.09	4.7	2.33	2.97	9.24	5.52	4.02	2.51
Merged-chr14-64178834-1	chr14	64178734	64178934	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	74511.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	5.65	1.51	5.7	3.22	0.0	1.88	5.31	3.73	2.36	3.51	2.01	1.25
Merged-chr2-71655964-1	chr2	71655864	71656064	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-63453.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	2.02	2.01	5.7	4.42	4.09	4.08	1.99	5.3	2.36	1.0	3.01	4.07
Merged-chr3-37687399-1	chr3	37687299	37687499	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	36961.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.44	8.05	4.56	3.22	4.5	1.88	0.66	1.82	3.34	3.01	5.53	0.63
Merged-chrX-169888378-2	chrX	169888270	169888470	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290505, intron 1 of 9)	intron (NM_001290505, intron 1 of 9)	8751.0	NM_001290505	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	4.04	1.01	2.28	6.44	2.86	1.88	4.65	5.21	7.67	8.03	10.05	6.89
Merged-chr14-30627110-1	chr14	30627010	30627210	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-902.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.81	2.77	3.99	0.8	6.14	1.88	2.99	1.88	4.72	3.51	1.51	2.82
Merged-chr6-55379918-1	chr6	55379818	55380018	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003685, intron 4 of 12)	intron (NM_001003685, intron 4 of 12)	3623.0	NM_001003685	14602.0	Mm.89928	NM_001003685	ENSMUSG00000004654	Ghrhr	Ghrfr|lit|little	growth hormone releasing hormone receptor	protein-coding	3.63	0.0	2.28	0.0	0.82	5.33	4.32	3.79	0.59	0.5	3.01	3.13
Merged-chr12-40217790-1	chr12	40217690	40217890	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	5021.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	5.65	1.26	1.14	5.23	7.77	9.09	6.98	3.42	3.93	14.56	3.52	1.25
Merged-chrX-73343086-1	chrX	73342986	73343186	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001160229, intron 1 of 4)	intron (NM_001160229, intron 1 of 4)	465.0	NM_001160229	27081.0	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	1.62	5.79	8.56	10.46	5.32	7.21	6.31	4.32	1.77	5.02	3.52	4.7
Merged-chr2-31881144-1	chr2	31881044	31881244	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6137.0	NM_011836	23928.0	Mm.69566	NM_011836	ENSMUSG00000026840	Lamc3	1110064A23Rik|AI562206|AW240805	laminin gamma 3	protein-coding	4.04	9.81	1.71	4.83	1.64	6.9	3.32	3.93	9.05	5.52	7.54	5.95
Merged-chr16-24953514-1	chr16	24953414	24953614	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-106125.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.65	5.53	4.56	3.22	6.55	3.76	2.66	0.25	10.82	12.05	7.54	8.14
Merged-chr3-84050429-1	chr3	84050329	84050529	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10268.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	2.42	1.76	1.14	0.0	6.55	5.96	0.0	4.57	0.39	4.52	3.01	0.94
Merged-chr15-96729248-2	chr15	96729159	96729359	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29531.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.83	6.79	7.42	3.22	6.95	8.78	1.33	4.37	6.29	9.04	6.03	7.83
Merged-chr4-140688495-1	chr4	140688395	140688595	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12978.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	8.48	1.01	5.13	2.41	6.14	3.76	5.31	4.15	8.26	6.03	8.04	5.01
Merged-chr7-99071411-1	chr7	99071311	99071511	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 5 of 14)	L1_Mus4|LINE|L1	69733.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.81	1.01	0.57	0.8	0.0	1.88	0.0	0.03	8.46	9.54	2.01	0.94
Merged-chr18-11692973-1	chr18	11692873	11693073	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	35624.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	1.62	1.76	7.99	8.85	0.41	0.0	0.0	0.0	9.24	9.04	7.54	0.0
Merged-chrX-169804675-1	chrX	169804575	169804775	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290512, intron 2 of 9)	intron (NM_001290512, intron 2 of 9)	-23484.0	NM_001290504	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	1.62	1.51	1.14	4.02	5.73	1.25	3.32	6.5	3.54	0.0	2.51	1.57
Merged-chr8-94381397-1	chr8	94381297	94381497	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-5032.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.42	1.51	3.42	5.63	4.09	7.53	5.65	5.07	4.33	3.51	10.55	2.82
Merged-chr19-7493474-1	chr19	7493374	7493574	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-566.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	3.63	1.26	7.99	2.01	1.64	6.27	4.98	4.09	2.36	1.0	1.0	6.58
Merged-chr17-45685441-1	chr17	45685341	45685541	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026732)	promoter-TSS (NM_026732)	777.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	5.25	4.53	3.99	6.84	4.09	7.84	2.66	3.62	7.87	20.59	13.57	3.45
Merged-chr1-157503151-1	chr1	157503051	157503251	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-3645.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	1.21	1.26	2.28	3.22	6.14	1.88	4.32	4.35	3.54	2.51	4.52	2.19
Merged-chr9-32636185-1	chr9	32636085	32636285	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59857.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.62	4.02	1.14	3.62	4.91	5.96	1.33	4.79	4.13	3.01	9.04	6.27
Merged-chr8-61664461-1	chr8	61664361	61664561	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73292.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.02	5.28	3.42	4.02	2.45	3.14	4.32	3.64	5.11	1.51	6.53	2.51
Merged-chr5-139075313-1	chr5	139075213	139075413	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359099, intron 4 of 10)	intron (NM_001359099, intron 4 of 10)	54439.0	NM_008923	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	3.63	1.26	6.28	8.04	2.86	7.21	1.99	5.19	15.34	7.53	9.55	4.39
Merged-chr8-70352876-1	chr8	70352776	70352976	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001122829, exon 1 of 24)	exon (NM_001122829, exon 1 of 24)	403.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	3.63	10.31	2.85	4.83	2.05	7.53	4.98	4.21	7.08	8.03	6.03	6.58
Merged-chr17-34958216-1	chr17	34958116	34958316	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010478, exon 1 of 1)	exon (NM_010478, exon 1 of 1)	1022.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	8.88	0.0	2.28	6.44	4.09	10.98	3.99	8.27	2.75	3.51	1.0	1.57
Merged-chr16-31194068-1	chr16	31193968	31194168	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	7170.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	3.63	2.52	7.99	2.01	0.0	3.76	5.98	4.12	3.93	1.0	2.01	3.76
Merged-chr9-106160285-1	chr9	106160185	106160385	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2147.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	5.25	10.06	9.13	10.05	8.59	7.53	5.31	6.64	10.62	15.57	6.53	7.83
Merged-chr10-13851870-1	chr10	13851770	13851970	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	L2|LINE|L2	17087.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	1.21	2.01	4.56	2.41	6.14	2.82	3.99	9.03	2.56	0.0	6.53	4.7
Merged-chr4-138435228-1	chr4	138435128	138435328	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026689, intron 1 of 3)	intron (NM_026689, intron 1 of 3)	556.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	3.63	1.01	3.99	3.22	7.36	1.25	1.33	4.12	10.23	7.03	8.04	5.01
Merged-chrX-51204823-1	chrX	51204723	51204923	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134163, intron 1 of 7)	CpG	1167.0	NM_001310515	171170.0	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind like splicing factor 3	protein-coding	2.42	1.51	4.56	0.8	4.09	5.64	3.32	4.82	2.56	0.5	2.01	2.19
Merged-chr11-103142478-1	chr11	103142378	103142578	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9119.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	4.44	1.51	6.85	0.8	6.14	0.31	0.33	4.15	2.16	3.01	2.51	1.25
Merged-chr4-12023893-1	chr4	12023793	12023993	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57319.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	4.04	4.02	2.85	4.02	6.95	5.33	6.31	4.77	7.47	3.01	2.51	3.76
Merged-chr11-44408769-1	chr11	44408669	44408869	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303244, intron 4 of 7)	intron (NM_001303244, intron 4 of 7)	8706.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	2.42	1.51	1.14	4.02	3.27	1.88	4.32	4.12	2.75	3.01	3.01	3.45
Merged-chr9-42473606-1	chr9	42473506	42473706	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1348.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	9.69	6.29	1.14	0.8	1.64	9.72	1.33	2.05	8.46	12.05	9.55	5.95
Merged-chr3-65943983-1	chr3	65943883	65944083	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14266.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.04	4.28	2.28	4.02	4.5	8.78	2.66	4.18	8.06	8.54	7.03	0.63
Merged-chr9-62488811-1	chr9	62488711	62488911	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175484, intron 2 of 11)	intron (NM_175484, intron 2 of 11)	48233.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.4	0.0	0.57	0.0	5.32	1.88	3.32	6.22	3.54	0.0	0.5	0.94
Merged-chr7-89371112-1	chr7	89371012	89371212	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-32325.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.65	1.76	0.0	4.02	3.27	5.64	2.33	5.92	3.74	6.03	1.0	0.94
Merged-chr11-78399847-1	chr11	78399747	78399947	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022411, intron 9 of 11)	intron (NM_022411, intron 9 of 11)	5362.0	NR_003282	790911.0	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	2.42	3.52	4.56	1.61	2.45	2.51	3.32	1.85	9.24	6.53	3.01	5.95
Merged-chr2-165070510-1	chr2	165070410	165070610	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 7 of 7)	intron (NR_027852, intron 7 of 7)	14874.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	7.67	4.28	6.85	2.41	4.91	8.78	1.99	1.65	10.42	8.03	5.02	4.39
Merged-chr11-49271470-1	chr11	49271370	49271570	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8680.0	NM_146471	258463.0	Mm.377517	NM_146471	ENSMUSG00000059864	Olfr1393	MOR256-24	olfactory receptor 1393	protein-coding	9.69	6.29	1.14	4.83	6.55	5.64	2.33	3.11	5.9	2.51	6.53	4.07
Merged-chr17-24140915-1	chr17	24140815	24141015	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	679.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	6.46	5.03	4.56	3.22	2.86	4.39	1.0	5.72	6.69	6.53	6.53	4.7
Merged-chr3-22062141-1	chr3	22062041	22062241	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14511.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.83	3.77	2.85	9.25	4.09	5.33	1.99	1.46	10.23	2.51	1.0	9.4
Merged-chr19-40728408-1	chr19	40728308	40728508	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	68638.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.83	0.5	2.28	2.82	2.05	0.94	6.31	4.01	1.18	1.51	0.5	0.94
Merged-chr11-77318926-1	chr11	77318826	77319026	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	RMER6A|LTR|ERVK	-29354.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.46	8.3	0.0	8.04	6.55	6.27	2.66	2.61	3.93	8.03	9.04	6.58
Merged-chr5-34782002-1	chr5	34781902	34782102	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	20262.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	3.23	3.27	5.7	4.83	0.82	1.57	0.66	1.93	10.62	6.53	9.04	11.28
Merged-chr1-72317103-1	chr1	72317003	72317203	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357519, intron 5 of 20)	intron (NM_001357519, intron 5 of 20)	9682.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	2.83	3.02	0.0	3.62	2.05	2.51	4.65	3.59	0.59	3.01	3.52	1.88
Merged-chr4-10976816-1	chr4	10976716	10976916	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	30803.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.25	2.52	2.28	2.41	4.5	5.02	5.31	6.93	3.93	4.52	7.54	5.95
Merged-chr17-67614599-1	chr17	67614499	67614699	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	14733.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	2.83	3.52	1.14	0.0	0.0	1.25	2.99	4.26	3.15	4.52	3.52	7.52
Merged-chr7-44359083-1	chr7	44358983	44359183	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027049)	TTS (NM_027049)	15947.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	1.62	1.76	2.85	2.41	2.86	3.14	7.64	3.9	2.16	0.5	3.52	5.01
Merged-chr17-65845569-1	chr17	65845469	65845669	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	39354.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.4	3.02	1.14	2.01	5.73	1.57	3.65	1.91	2.16	2.51	4.02	2.51
Merged-chr17-84185775-1	chr17	84185675	84185875	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	2172.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.63	3.27	1.71	6.44	9.41	3.76	0.33	4.6	6.1	3.51	5.53	4.07
Merged-chr13-52818958-1	chr13	52818858	52819058	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61753.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	1.21	1.01	0.57	0.8	5.73	1.57	8.64	4.12	1.18	1.0	0.0	0.31
Merged-chr6-122720113-1	chr6	122720013	122720213	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12548.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	4.85	3.77	3.42	5.23	4.09	5.64	2.66	2.92	6.49	7.03	5.02	1.57
Merged-chr7-64281688-1	chr7	64281588	64281788	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-5982.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	6.46	0.5	2.28	3.22	3.68	5.64	2.66	4.77	2.75	3.51	5.53	3.45
Merged-chr12-111670128-1	chr12	111670028	111670228	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021273, intron 6 of 7)	intron (NM_021273, intron 6 of 7)	2210.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	11.31	3.02	3.42	6.84	5.73	5.33	1.33	2.55	7.87	5.52	11.05	5.95
Merged-chr5-54040779-1	chr5	54040679	54040879	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	42256.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.25	1.51	1.14	2.01	4.91	1.88	5.31	4.4	6.29	1.51	6.53	3.13
Merged-chr5-100719557-1	chr5	100719457	100719657	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_152803, exon 1 of 12)	exon (NM_152803, exon 1 of 12)	159.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	2.83	3.27	2.28	1.61	6.14	4.39	1.0	4.79	5.9	3.01	4.52	2.19
Merged-chr13-91163436-1	chr13	91163336	91163536	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	60551.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	6.86	9.31	1.71	8.04	1.64	0.0	1.33	0.31	3.15	0.5	0.0	0.63
Merged-chr9-53717633-1	chr9	53717533	53717733	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11401.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	1.62	3.52	1.14	7.64	1.64	2.51	5.31	3.98	4.33	2.01	3.52	3.45
Merged-chr11-100720426-1	chr11	100720326	100720526	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	6576.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.65	7.04	0.0	5.23	10.23	9.72	5.31	4.12	6.69	12.05	1.0	4.07
Merged-chr8-19162209-1	chr8	19162109	19162309	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4322.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	3.63	6.29	0.0	2.41	3.27	4.39	4.32	2.1	6.69	7.03	8.04	3.45
Merged-chr4-139158498-1	chr4	139158398	139158598	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22157.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	1.62	3.27	3.99	0.8	4.91	5.33	3.65	9.11	2.75	0.5	2.01	3.13
Merged-chr13-101844627-1	chr13	101844527	101844727	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76410.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.81	3.52	5.7	2.01	5.73	4.39	8.64	7.6	5.51	7.53	16.58	4.7
Merged-chr11-29753127-1	chr11	29753027	29753227	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146016, exon 34 of 42)	exon (NM_146016, exon 34 of 42)	34564.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	9.29	3.02	3.99	9.25	0.0	0.31	1.0	1.65	1.97	2.51	2.01	2.51
Merged-chr3-133545993-1	chr3	133545893	133546093	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1603.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.23	0.75	0.0	0.8	5.73	4.7	2.33	3.59	7.67	6.03	5.02	8.14
Merged-chr18-67798172-1	chr18	67798072	67798272	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045376, intron 1 of 3)	intron (NR_045376, intron 1 of 3)	1771.0	NR_045376	75286.0	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	5.25	4.28	7.99	4.02	6.55	2.2	1.99	6.25	9.05	4.52	7.54	9.71
Merged-chr13-102663642-1	chr13	102663542	102663742	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29905.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.65	5.28	4.56	8.85	1.64	1.88	0.66	2.89	11.6	10.54	4.52	8.46
Merged-chr17-34107652-1	chr17	34107552	34107752	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12248.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	7.67	9.81	4.56	1.61	1.23	2.2	1.66	1.51	2.36	3.01	0.5	2.19
Merged-chr16-3733395-1	chr16	3733295	3733495	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-10704.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	3.23	1.26	1.71	0.8	6.95	5.33	2.66	5.72	6.69	8.54	9.55	3.76
Merged-chr10-19549667-1	chr10	19549567	19549767	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42282.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	2.02	5.03	5.7	0.0	5.32	9.09	2.99	3.84	8.26	2.01	9.04	1.88
Merged-chr8-110672286-1	chr8	110672186	110672386	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151674, intron 13 of 18)	intron (NR_151674, intron 13 of 18)	-49190.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	8.48	3.77	1.14	2.01	3.68	0.63	2.99	4.71	2.16	7.53	7.54	2.19
Merged-chr8-94983973-1	chr8	94983873	94984073	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018882)	promoter-TSS (NM_018882)	-426.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	8.08	4.53	5.13	1.61	2.86	8.78	9.3	4.74	8.06	3.51	10.55	3.13
Merged-chr6-82039390-1	chr6	82039290	82039490	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2238.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	4.85	0.75	1.71	3.62	5.32	3.76	3.65	5.66	2.56	0.0	0.5	0.31
Merged-chr17-5672796-1	chr17	5672696	5672896	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-125861.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	1.62	1.76	0.0	0.8	6.95	1.88	0.0	3.0	2.95	1.0	1.51	1.57
Merged-chr19-11447436-1	chr19	11447336	11447536	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021718, intron 1 of 6)	intron (NM_021718, intron 1 of 6)	3878.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	5.65	8.3	10.84	4.02	6.14	8.78	6.64	4.29	4.72	8.03	5.53	2.51
Merged-chr19-37530216-1	chr19	37530116	37530316	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20202.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.06	6.79	12.55	0.8	5.73	1.25	3.99	2.83	2.95	3.51	2.01	1.57
Merged-chr6-125622653-1	chr6	125622553	125622753	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 18 of 51)	intron (NM_011708, intron 18 of 51)	-67766.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	8.08	2.52	5.13	4.83	4.91	5.64	4.65	4.63	12.78	6.53	3.52	1.88
Merged-chr7-97799723-1	chr7	97799623	97799823	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11182.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	2.42	1.76	4.56	2.01	2.45	5.02	0.66	5.05	1.38	1.51	2.01	5.95
Merged-chr17-26243002-1	chr17	26242902	26243102	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	1240.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	2.42	2.26	6.28	0.0	5.73	2.2	1.33	1.57	6.29	5.02	3.01	2.82
Merged-chr7-100848902-1	chr7	100848802	100849002	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358914, intron 6 of 10)	intron (NM_001358914, intron 6 of 10)	14511.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	2.02	7.55	7.99	4.02	4.09	6.9	3.32	3.5	6.88	5.02	3.01	3.13
Merged-chr5-121188414-1	chr5	121188314	121188514	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	2983.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	8.88	5.53	11.41	2.41	2.45	1.88	3.65	5.21	1.77	1.0	8.54	2.51
Merged-chr1-118553242-1	chr1	118553142	118553342	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-74703.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.81	2.26	2.28	5.23	8.18	4.39	5.31	5.75	1.18	1.51	3.52	2.51
Merged-chr19-43679333-1	chr19	43679233	43679433	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	4155.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	15.75	10.06	14.26	3.22	8.59	7.53	5.98	7.21	10.42	7.03	5.53	2.51
Merged-chr11-82959895-1	chr11	82959795	82959995	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183201, intron 4 of 5)	RLTR30|LTR|ERV1	786.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	3.23	3.27	1.14	3.22	0.82	5.02	0.33	5.5	6.29	7.03	3.01	3.76
Merged-chr10-17510451-1	chr10	17510351	17510551	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-212777.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	1.62	6.54	7.42	4.02	2.45	5.64	2.99	1.46	0.79	4.02	3.01	3.13
Merged-chr4-34269855-1	chr4	34269755	34269955	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-219788.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	1.62	0.25	3.99	4.02	0.0	0.0	5.65	4.77	2.16	2.51	4.52	1.88
Merged-chr19-56747479-1	chr19	56747379	56747579	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	25107.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	1.62	3.77	3.99	1.61	2.86	4.39	3.99	3.17	7.28	5.52	6.03	4.39
Merged-chr11-76856749-1	chr11	76856649	76856849	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9741.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	3.23	3.02	2.28	2.41	10.64	7.53	3.65	4.85	4.72	6.53	9.55	4.7
Merged-chr15-59776046-1	chr15	59775946	59776146	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18913.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.46	1.01	1.71	0.8	1.64	1.57	4.98	5.1	1.77	1.0	3.01	0.63
Merged-chr7-49471558-1	chr7	49471458	49471658	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165277.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	3.23	1.76	3.42	5.63	6.95	5.96	6.64	3.81	5.31	6.03	5.53	2.82
Merged-chr4-134638116-2	chr4	134637993	134638193	+	552.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	66197.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	5.25	5.53	9.13	7.24	2.05	3.76	1.99	6.53	5.11	1.0	1.0	3.76
Merged-chr13-21509073-2	chr13	21508974	21509174	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2550.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	1.21	3.52	4.56	3.22	2.45	4.7	2.33	4.65	3.15	9.04	10.05	3.45
Merged-chr14-57548756-1	chr14	57548656	57548856	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026526)	TTS (NM_026526)	22813.0	NM_026526	68043.0	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	EEF1A alpha lysine methyltransferase 1	protein-coding	0.0	0.0	3.42	2.41	2.05	5.64	3.99	3.56	4.52	7.03	4.52	2.51
Merged-chr1-135369053-2	chr1	135368954	135369154	+	552.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_053106)	TTS (NM_053106)	6009.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	8.88	6.29	1.71	5.63	1.64	7.21	1.0	4.54	8.85	3.01	3.01	3.45
Merged-chr17-43267596-1	chr17	43267496	43267696	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2751.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	8.08	5.79	5.13	5.23	7.36	11.29	3.32	4.79	4.13	4.52	6.53	5.64
Merged-chr1-40306328-1	chr1	40306228	40306428	+	552.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123382, intron 8 of 10)	RLTR17|LTR|ERVK	-18261.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	4.85	2.52	5.7	0.0	2.05	7.53	0.66	4.63	6.49	10.04	10.55	8.77
Merged-chr18-82866972-1	chr18	82866872	82867072	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11075.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	1.51	1.14	3.62	9.82	5.64	2.33	4.43	2.16	3.01	3.52	4.7
Merged-chr17-51783853-1	chr17	51783753	51783953	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	28201.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	2.02	1.26	2.85	5.23	3.27	1.57	3.99	2.36	0.79	5.02	6.03	3.13
Merged-chr6-122873968-1	chr6	122873868	122874068	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-589.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	6.46	4.28	1.14	1.61	1.64	0.63	2.66	3.25	4.13	5.52	7.54	12.84
Merged-chr11-90697984-1	chr11	90697884	90698084	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10383.0	NM_001357543	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	3.63	3.77	5.13	3.22	2.86	1.88	6.31	6.87	1.77	4.02	2.51	0.31
Merged-chr1-77329809-1	chr1	77329709	77329909	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	166959.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	3.77	1.71	2.82	2.45	4.7	8.97	3.87	1.77	3.01	2.51	1.57
Merged-chr18-76160081-1	chr18	76159981	76160181	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10471.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.0	3.52	1.14	0.0	0.0	4.39	0.0	0.36	17.51	5.02	10.05	5.95
Merged-chr2-45019204-1	chr2	45019104	45019304	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 3 of 9)	intron (NM_001355291, intron 3 of 9)	3973.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	6.06	2.77	3.99	7.24	12.27	6.27	3.99	4.26	4.33	2.51	5.53	4.39
Merged-chr1-169673689-1	chr1	169673589	169673789	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001313705, intron 1 of 3)	intron (NM_001313705, intron 1 of 3)	18188.0	NM_009063	19737.0	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	6.86	13.83	9.13	5.23	0.0	0.0	0.0	0.0	0.2	0.0	0.0	0.0
Merged-chr14-25402626-1	chr14	25402526	25402726	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56559.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.85	3.77	0.57	1.61	6.95	4.39	6.64	3.48	3.74	8.54	5.53	1.57
Merged-chr3-13712192-1	chr3	13712092	13712292	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	CT-rich|Low_complexity|Low_complexity	-59327.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	2.42	2.26	0.0	2.41	7.36	2.82	3.32	3.79	1.77	10.04	3.01	3.45
Merged-chr1-133146181-1	chr1	133146081	133146281	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15015.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	9.29	4.28	6.28	1.21	3.68	8.15	1.0	3.53	6.88	2.01	12.06	5.01
Merged-chr6-133904735-1	chr6	133904635	133904835	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51068.0	NM_010594	16483.0	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.4	1.51	6.85	6.44	5.32	4.7	0.0	4.51	1.18	3.01	2.01	2.19
Merged-chr1-150015526-1	chr1	150015426	150015626	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54236.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	1.21	2.26	5.7	2.41	2.45	6.59	2.66	2.75	7.67	8.03	3.52	5.64
Merged-chr8-109681663-1	chr8	109681563	109681763	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 4 of 10)	MTB_Mm|LTR|ERVL-MaLR	11631.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	2.02	1.76	1.14	3.22	2.45	2.2	3.65	4.6	13.37	10.54	7.54	5.95
Merged-chr10-96605372-2	chr10	96605263	96605463	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11638.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	1.21	3.52	5.7	1.61	7.36	5.02	1.99	12.22	8.65	6.03	5.02	4.07
Merged-chr2-167382503-1	chr2	167382403	167382603	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-33325.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	2.02	3.52	1.71	5.63	5.73	1.25	0.33	3.53	5.11	2.01	1.0	3.45
Merged-chr4-18098292-1	chr4	18098192	18098392	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019724, intron 7 of 9)	intron (NM_019724, intron 7 of 9)	244834.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.25	0.0	0.8	1.64	0.63	3.65	4.93	0.0	0.0	1.0	0.0
Merged-chr13-73620875-1	chr13	73620775	73620975	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_146047)	TTS (NM_146047)	-6036.0	NM_001362387	21752.0	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	2.02	7.29	3.42	7.24	1.64	4.08	5.31	5.02	7.47	6.03	7.03	1.25
Merged-chr5-140162753-1	chr5	140162653	140162853	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152617, intron 11 of 16)	ORR1E|LTR|ERVL-MaLR	12165.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	1.21	3.52	3.42	0.8	2.05	3.45	3.65	3.39	0.79	2.51	0.5	0.31
Merged-chr1-133382215-1	chr1	133382115	133382315	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011439)	TTS (NM_011439)	18643.0	NM_175443	214253.0	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	2.83	3.02	1.14	3.22	8.18	17.25	3.65	2.13	2.75	9.54	9.04	2.82
Merged-chr1-16746109-1	chr1	16746009	16746209	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57653.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.25	1.51	2.28	5.23	4.09	5.02	2.66	4.49	2.56	3.01	2.51	8.46
Merged-chr8-68368768-1	chr8	68368668	68368868	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038181, intron 1 of 3)	MER63A|DNA|hAT-Blackjack	309.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.75	3.99	1.61	7.77	3.14	3.65	4.57	0.98	1.51	1.0	0.94
Merged-chr13-56429273-1	chr13	56429173	56429373	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9082.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	3.63	5.03	1.71	6.44	8.59	5.64	1.33	3.14	8.85	7.53	8.04	4.39
Merged-chr9-97307954-1	chr9	97307854	97308054	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62004.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	7.27	3.02	0.0	2.82	8.18	2.51	2.99	3.81	3.74	2.01	4.02	3.76
Merged-chr10-127598700-1	chr10	127598600	127598800	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	22448.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.4	2.52	0.57	4.02	2.45	4.39	1.66	3.93	3.34	5.52	3.52	3.76
Merged-chr18-34878599-1	chr18	34878499	34878699	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	17392.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	11.71	4.02	3.42	0.0	6.14	7.84	0.33	5.78	13.18	1.51	8.04	5.01
Merged-chr6-35148187-1	chr6	35148087	35148287	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-14450.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	5.65	6.04	2.85	4.02	4.91	1.25	4.32	4.51	4.92	5.52	8.04	5.95
Merged-chr14-40935325-1	chr14	40935225	40935425	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	12884.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	12.11	2.26	1.14	1.61	0.82	1.57	3.65	4.15	0.79	0.0	2.51	0.63
Merged-chr6-8028533-1	chr6	8028433	8028633	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	164084.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	2.42	7.04	8.56	6.44	6.14	1.25	0.66	0.36	0.0	0.5	0.5	0.31
Merged-chr16-52040185-1	chr16	52040085	52040285	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	8636.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.44	2.77	0.0	5.23	1.23	6.9	1.66	4.12	0.79	2.01	7.54	0.63
Merged-chr10-37342944-1	chr10	37342844	37343044	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-204018.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.83	1.51	0.57	2.82	0.82	2.51	5.31	2.58	5.51	7.03	6.03	1.88
Merged-chr14-73132816-1	chr14	73132716	73132916	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-9694.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	1.62	0.5	0.57	4.42	1.64	10.66	4.32	4.12	5.51	1.51	5.02	2.82
Merged-chr7-64077237-1	chr7	64077137	64077337	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76598.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	1.62	4.28	7.99	4.42	4.09	8.78	6.98	2.58	2.56	7.03	1.51	2.51
Merged-chr8-77482205-1	chr8	77482105	77482305	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-34851.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.23	2.52	3.42	7.24	3.27	11.6	5.31	4.21	10.82	8.03	3.52	3.76
Merged-chr6-134240584-1	chr6	134240484	134240684	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-155745.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	10.9	2.01	3.42	7.24	6.14	3.76	1.66	4.46	2.36	2.01	0.0	4.7
Merged-chr8-119813989-1	chr8	119813889	119814089	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	26590.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.85	4.28	1.71	6.84	3.27	2.2	5.31	3.0	4.52	3.51	8.04	4.7
Merged-chr1-57574716-1	chr1	57574616	57574816	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168042.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	1.62	1.51	0.0	2.41	5.73	5.02	3.32	9.7	4.33	9.04	12.06	3.13
Merged-chr7-44140637-1	chr7	44140537	44140737	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008454, exon 3 of 5)	exon (NM_008454, exon 3 of 5)	3347.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.0	0.5	7.99	0.8	4.09	0.94	5.98	4.4	1.97	4.02	1.51	1.25
Merged-chr2-158080029-1	chr2	158079929	158080129	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040609, intron 3 of 3)	intron (NR_040609, intron 3 of 3)	11768.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	6.86	7.8	9.7	2.41	2.05	5.96	1.66	4.12	6.29	3.01	2.51	12.22
Merged-chr8-126901907-1	chr8	126901807	126902007	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44014.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	2.02	4.28	2.28	2.82	1.23	4.7	1.33	5.83	5.11	1.0	4.52	3.13
Merged-chr19-5819742-1	chr19	5819642	5819842	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17070.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	1.62	12.07	3.42	4.42	6.55	5.96	4.32	2.94	5.11	7.03	5.02	5.01
Merged-chr8-12711910-1	chr8	12711810	12712010	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033546, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	7217.0	NR_033546	100038554.0	Mm.367723	NR_033546	ENSMUSG00000074469	Gm15348	-	predicted gene 15348	ncRNA	4.44	0.75	5.13	2.82	0.82	2.2	4.65	3.42	1.38	2.01	4.02	2.19
Merged-chr15-79928970-1	chr15	79928870	79929070	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144811, intron 2 of 6)	intron (NM_144811, intron 2 of 6)	3676.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	2.83	3.77	1.14	0.8	4.91	5.02	1.99	4.4	4.72	2.01	2.51	1.57
Merged-chr7-104218133-1	chr7	104218033	104218233	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	-662.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	2.83	1.01	0.0	0.0	8.18	1.57	5.31	3.0	5.51	1.0	8.54	2.82
Merged-chr6-122969311-1	chr6	122969211	122969411	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153197, intron 5 of 5)	intron (NM_153197, intron 5 of 5)	16667.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.81	1.51	0.57	2.41	5.73	3.45	3.32	6.79	0.98	0.0	1.51	1.57
Merged-chr3-19515713-1	chr3	19515613	19515813	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	7118.0	NM_025489	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.0	1.01	1.14	6.84	4.91	6.27	3.99	4.46	2.16	0.0	0.5	1.25
Merged-chr9-68888900-1	chr9	68888800	68889000	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	123554.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	10.9	6.54	5.7	9.65	3.27	5.64	4.98	5.19	5.11	1.0	8.04	5.33
Merged-chr6-54715899-1	chr6	54715799	54715999	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34275.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.44	5.03	2.28	11.26	10.23	2.2	2.99	4.71	5.7	5.52	16.08	2.19
Merged-chr16-32837011-1	chr16	32836911	32837111	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172615, intron 8 of 18)	intron (NM_172615, intron 8 of 18)	-26565.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	0.0	2.52	8.56	1.21	2.45	6.27	3.32	4.71	0.2	2.01	0.0	0.31
Merged-chr8-10373253-1	chr8	10373153	10373353	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001319151, intron 7 of 34)	intron (NM_001319151, intron 7 of 34)	219342.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	1.26	1.14	0.8	1.64	5.02	1.33	5.27	1.18	1.0	0.0	2.82
Merged-chr11-22872467-1	chr11	22872367	22872567	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12131.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.46	3.77	4.56	7.24	12.27	6.27	12.29	3.73	3.34	4.52	6.53	6.27
Merged-chr11-115247363-1	chr11	115247263	115247463	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033393)	TTS (NM_001033393)	19880.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	4.04	0.75	2.28	0.0	2.05	3.45	3.32	0.9	2.16	2.01	5.53	1.57
Merged-chrX-23709866-1	chrX	23709766	23709966	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	16815.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	6.86	5.03	4.56	4.02	0.82	4.7	4.65	6.03	10.82	6.53	3.52	4.7
Merged-chr6-128318566-1	chr6	128318466	128318666	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17753.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	2.83	2.52	7.42	3.22	4.91	3.45	3.65	4.96	3.74	8.03	3.01	10.34
Merged-chr12-110499390-1	chr12	110499290	110499490	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13651.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.81	0.0	0.0	0.0	5.32	4.7	3.65	4.26	9.44	3.01	0.0	1.57
Merged-chr10-127633353-1	chr10	127633253	127633453	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9633.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	2.01	0.0	4.83	3.27	1.88	0.0	3.2	1.18	5.02	3.01	5.33
Merged-chr7-132551427-1	chr7	132551327	132551527	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24971.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	4.85	4.53	2.85	1.61	5.73	6.27	5.65	3.9	4.92	5.02	4.52	5.95
Merged-chr1-9944976-1	chr1	9944876	9945076	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-858.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	3.23	3.02	13.69	10.46	13.91	4.7	5.31	2.5	11.8	7.53	5.53	5.01
Merged-chrX-77740971-1	chrX	77740871	77741071	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	54989.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	5.25	5.03	6.85	11.26	8.59	16.31	9.3	3.0	7.67	15.57	6.03	3.13
Merged-chr17-29371485-1	chr17	29371385	29371585	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10571.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	9.69	5.28	7.42	4.02	8.18	8.15	1.99	4.18	6.29	4.52	5.02	3.13
Merged-chr8-11575698-1	chr8	11575598	11575798	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17288.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	3.63	3.77	2.28	4.02	5.73	4.7	1.33	3.28	5.31	7.53	5.53	3.45
Merged-chr9-109876336-1	chr9	109876236	109876436	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007658, intron 1 of 14)	CpG	757.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	10.09	3.27	6.28	3.62	5.73	3.76	6.64	4.26	7.08	6.53	1.51	7.21
Merged-chr5-92493652-1	chr5	92493552	92493752	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	12005.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	2.83	2.01	3.42	0.4	3.27	6.27	4.98	4.82	2.16	6.53	3.01	4.07
Merged-chr15-76294325-1	chr15	76294225	76294425	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001195537)	promoter-TSS (NM_001195537)	-109.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	6.46	5.53	7.42	3.22	3.27	9.09	1.99	4.43	7.87	4.02	4.52	8.14
Merged-chr1-140531695-1	chr1	140531595	140531795	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 20 of 27)	intron (NM_001081027, intron 20 of 27)	124707.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	5.65	3.02	5.13	1.61	4.5	4.39	3.32	4.57	3.15	4.02	4.02	4.07
Merged-chr7-143459770-1	chr7	143459670	143459870	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001354981, intron 2 of 3)	CpG-13764	1280.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	3.23	2.52	1.14	1.21	4.09	3.45	5.65	3.28	4.52	3.01	5.53	7.52
Merged-chr6-113342654-1	chr6	113342554	113342754	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	1268.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.4	0.75	2.28	3.22	2.86	1.57	3.65	3.87	3.15	2.01	1.51	1.57
Merged-chr13-11907035-1	chr13	11906935	11907135	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	199910.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	1.21	2.01	3.42	2.01	4.91	5.33	1.66	6.39	6.29	3.51	8.54	6.27
Merged-chr7-4656076-1	chr7	4655976	4656176	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	2874.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	7.27	5.79	6.85	8.45	3.68	0.63	1.66	4.18	3.74	1.0	6.03	0.31
Merged-chr16-44777702-1	chr16	44777602	44777802	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	11966.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.75	0.0	5.23	3.27	5.02	4.98	4.01	0.79	0.5	0.5	3.13
Merged-chr18-34955264-1	chr18	34955164	34955364	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-913.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	2.02	5.28	3.42	4.42	8.18	8.47	2.33	5.44	4.92	4.52	8.54	6.89
Merged-chr13-115130187-1	chr13	115130087	115130287	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28223.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.81	2.01	1.14	0.0	6.55	3.14	1.66	5.21	4.33	7.53	5.53	4.07
Merged-chr2-150903779-1	chr2	150903679	150903879	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356549, intron 1 of 13)	intron (NM_001356549, intron 1 of 13)	952.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.83	0.75	3.42	4.02	4.5	1.88	4.32	3.5	3.74	0.5	5.02	3.13
Merged-chr12-36363809-1	chr12	36363709	36363909	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17641.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0.0	1.51	4.56	4.42	0.82	0.0	2.66	6.7	5.7	0.5	4.02	6.89
Merged-chr12-111745852-1	chr12	111745752	111745952	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	RSINE1|SINE|B4	-12997.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	1.62	0.25	2.85	2.41	5.32	6.9	1.0	3.79	5.31	5.02	6.03	2.19
Merged-chr2-148764265-1	chr2	148764165	148764365	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7232.0	NM_030059	78240.0	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	3.63	1.51	3.42	1.61	6.14	4.39	0.66	4.07	0.79	0.5	2.01	1.57
Merged-chr7-89235499-1	chr7	89235399	89235599	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	103288.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.63	2.01	2.28	4.02	8.18	11.29	2.66	2.94	2.56	8.54	1.51	0.0
Merged-chr15-33356959-1	chr15	33356859	33357059	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 4 of 7)	intron (NM_176073, intron 4 of 7)	48980.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	4.04	3.02	1.14	4.02	5.73	2.51	1.33	4.99	0.79	0.5	6.03	2.51
Merged-chr1-150395831-1	chr1	150395731	150395931	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133780, intron 3 of 51)	RMER6B|LTR|ERVK	-2751.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	6.86	5.03	0.0	5.63	10.23	6.9	5.31	4.04	7.87	8.03	5.02	3.76
Merged-chr11-52064553-1	chr11	52064453	52064653	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	B3|SINE|B2	-34271.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	2.42	3.52	6.28	4.83	3.27	5.96	4.65	4.79	7.08	5.52	5.02	11.28
Merged-chr10-85387306-1	chr10	85387206	85387406	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028709, exon 1 of 17)	5' UTR (NM_028709, exon 1 of 17)	492.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.81	0.25	0.0	0.0	1.64	0.0	0.0	0.0	9.44	5.52	6.53	5.33
Merged-chr14-120359793-1	chr14	120359693	120359893	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53341.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.27	1.01	4.56	6.03	5.32	4.39	2.33	4.51	4.72	4.02	2.51	1.88
Merged-chr10-80927771-1	chr10	80927671	80927871	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-2320.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.81	3.27	2.28	0.0	5.32	1.25	0.66	0.59	1.57	5.52	1.51	2.51
Merged-chr2-157838899-1	chr2	157838799	157838999	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-75754.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	7.27	1.51	4.56	1.21	3.27	3.45	6.31	4.63	2.75	4.52	4.52	5.95
Merged-chr14-70028567-1	chr14	70028467	70028667	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48878.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	18.57	5.79	4.56	0.8	3.27	2.51	2.99	1.65	4.92	10.54	9.55	8.77
Merged-chr4-144977285-1	chr4	144977185	144977385	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	84148.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.23	2.26	1.14	2.82	0.41	1.25	6.64	4.96	0.0	0.0	0.5	0.94
Merged-chr15-78848496-1	chr15	78848396	78848596	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027219, intron 2 of 2)	B1_Mur2|SINE|Alu	5849.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	1.62	3.02	1.14	0.0	0.0	2.2	2.99	0.79	3.34	2.01	3.01	1.25
Merged-chr13-99186409-2	chr13	99186334	99186534	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1611.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.65	4.53	4.56	3.22	5.73	2.2	1.0	5.58	6.29	9.54	5.02	5.95
Merged-chr9-108632079-1	chr9	108631979	108632179	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	17329.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	6.46	4.02	4.56	1.61	0.0	4.39	4.65	4.32	4.13	2.01	6.53	1.57
Merged-chr4-11008590-1	chr4	11008490	11008690	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-971.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	1.62	1.01	1.14	6.44	2.05	4.7	4.32	3.9	5.9	6.03	0.5	6.58
Merged-chr5-151021023-1	chr5	151020923	151021123	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68416.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	1.21	1.01	3.42	0.0	3.27	3.76	4.65	3.84	4.72	5.02	6.53	0.94
Merged-chr13-3743877-1	chr13	3743777	3743977	+	551.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60441.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	5.65	4.02	6.85	1.61	2.05	0.94	7.31	4.04	8.46	2.01	10.05	6.27
Merged-chr6-108873961-1	chr6	108873861	108874061	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER54B|LTR|ERVL	45320.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	2.42	2.01	1.14	4.02	5.73	0.0	4.65	4.63	1.18	0.0	0.0	0.63
Merged-chr2-118746739-2	chr2	118746633	118746833	+	551.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001301269, exon 1 of 1)	3' UTR (NM_001301269, exon 1 of 1)	975.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	3.23	5.79	0.57	9.65	5.32	2.51	3.32	3.39	8.65	3.51	5.02	6.27
Merged-chrX-23556543-1	chrX	23556443	23556643	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136508.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	1.21	2.01	5.13	1.61	0.82	3.76	1.0	4.63	2.36	3.01	5.53	3.13
Merged-chr17-23200102-1	chr17	23200002	23200202	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6850.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	1.62	5.28	2.28	0.8	1.64	2.2	4.65	3.25	3.74	3.51	3.52	2.51
Merged-chr12-100277116-1	chr12	100277016	100277216	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	507.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.85	2.01	0.0	3.22	6.55	8.47	2.33	2.8	1.77	4.02	3.01	4.39
Merged-chr7-81225197-1	chr7	81225097	81225297	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	B4A|SINE|B4	11393.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.83	2.52	1.71	0.8	1.23	5.33	6.31	3.95	5.9	4.52	2.51	1.25
Merged-chr4-3793369-1	chr4	3793269	3793469	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	42286.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	2.52	1.14	4.02	4.09	4.39	1.66	3.42	1.57	4.02	2.51	7.83
Merged-chr13-52042727-1	chr13	52042627	52042827	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54014.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.23	3.77	3.42	6.03	2.05	5.02	2.66	4.07	3.34	1.51	3.52	3.45
Merged-chr3-148226645-1	chr3	148226545	148226745	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	727990.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.81	3.02	3.42	4.42	4.09	1.88	3.99	4.4	0.0	1.0	3.01	1.25
Merged-chr7-126883909-1	chr7	126883809	126884009	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	1058.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	10.5	8.3	1.14	1.21	4.09	2.82	3.99	0.45	5.51	1.0	0.5	2.82
Merged-chr9-113645715-1	chr9	113645615	113645815	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-58563.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	1.62	4.02	10.27	1.61	4.91	2.2	1.99	1.04	3.34	4.52	5.02	3.45
Merged-chr5-5551359-1	chr5	5551259	5551459	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153116, intron 4 of 9)	L1_Rod|LINE|L1	8182.0	NM_153116	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	5.65	6.79	10.84	11.66	3.68	3.14	5.31	5.3	6.1	3.01	8.04	5.64
Merged-chr19-34612915-1	chr19	34612815	34613015	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001005858, exon 2 of 2)	3' UTR (NM_001005858, exon 2 of 2)	4958.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	1.21	4.28	6.28	4.42	4.5	3.14	2.66	5.55	2.56	1.51	7.03	7.52
Merged-chr4-124682455-1	chr4	124682355	124682555	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026031, exon 5 of 8)	exon (NM_026031, exon 5 of 8)	11099.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	3.23	4.53	0.0	2.41	6.55	8.47	0.33	4.04	6.49	5.02	6.53	4.07
Merged-chr17-47454842-2	chr17	47454752	47454952	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145489, intron 2 of 4)	intron (NM_145489, intron 2 of 4)	-17477.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	6.06	5.28	9.7	11.66	1.23	4.39	6.31	3.22	9.24	2.51	12.56	3.45
Merged-chr15-83038271-1	chr15	83038171	83038371	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4874.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.65	4.78	3.42	0.8	4.09	5.33	1.99	3.98	12.59	6.03	7.03	8.46
Merged-chr15-60855258-1	chr15	60855158	60855358	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30178.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	5.65	3.52	16.54	6.84	4.5	4.08	4.65	10.88	7.67	10.04	9.55	3.76
Merged-chr10-99468203-1	chr10	99468103	99468303	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-140968.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.83	2.01	2.28	6.44	3.68	0.0	4.32	4.54	3.54	3.01	3.52	4.39
Merged-chr10-80589584-1	chr10	80589484	80589684	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145421, intron 1 of 4)	RSINE1|SINE|B4	757.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.81	3.77	1.14	0.8	3.68	3.45	1.33	2.8	8.65	4.02	5.53	11.28
Merged-chr15-78754277-1	chr15	78754177	78754377	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	19168.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	2.42	2.77	3.99	1.61	4.5	4.39	5.31	4.49	2.16	3.01	4.02	5.33
Merged-chr5-110269306-1	chr5	110269206	110269406	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028273, intron 1 of 5)	intron (NM_028273, intron 1 of 5)	593.0	NM_028273	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	0.81	5.03	0.0	6.84	5.73	5.33	8.3	3.67	4.33	5.02	3.01	1.88
Merged-chr19-16067462-2	chr19	16067344	16067544	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65387.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	2.42	6.54	13.69	5.63	0.82	2.51	6.31	3.93	6.88	5.02	11.05	6.27
Merged-chr11-8662988-1	chr11	8662888	8663088	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	MIR|SINE|MIR	1547.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.42	1.76	0.57	0.8	3.68	1.57	6.31	3.03	3.15	4.52	2.01	3.45
Merged-chr17-81544652-1	chr17	81544552	81544752	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	193735.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.06	1.51	4.56	11.66	4.5	4.7	4.65	4.6	5.9	7.53	2.01	2.51
Merged-chr8-88244499-2	chr8	88244393	88244593	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 3 of 11)	intron (NM_001164499, intron 3 of 11)	-27910.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.23	3.52	7.42	2.82	6.95	5.02	4.32	4.15	8.65	10.04	9.55	5.33
Merged-chr2-18987748-1	chr2	18987648	18987848	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	RMER4B|LTR|ERVK	10373.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	1.01	0.0	0.0	5.73	4.08	0.0	7.99	2.56	8.54	10.05	5.95
Merged-chr8-94343452-1	chr8	94343352	94343552	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019415, intron 13 of 24)	intron (NM_019415, intron 13 of 24)	14244.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	6.06	3.02	6.85	4.02	7.77	6.27	5.98	4.88	6.49	4.52	10.05	7.21
Merged-chr6-52919250-1	chr6	52919150	52919350	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-9630.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	4.04	5.28	1.14	4.02	4.91	0.63	7.97	1.93	9.24	6.03	9.04	4.07
Merged-chr1-37473526-1	chr1	37473426	37473626	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	15079.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	2.02	0.5	1.14	2.82	1.64	5.02	2.33	4.6	5.7	1.51	3.01	6.89
Merged-chr2-165328968-1	chr2	165328868	165329068	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2489.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	2.83	0.5	0.0	0.8	1.64	6.27	4.65	3.28	5.7	3.01	5.53	4.07
Merged-chr3-68691325-1	chr3	68691225	68691425	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008351)	promoter-TSS (NM_008351)	-99.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.85	5.28	5.7	9.65	8.18	6.27	4.65	4.93	5.31	1.51	5.02	0.63
Merged-chr2-160364593-1	chr2	160364493	160364693	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2472.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	2.01	7.99	4.83	2.86	5.64	8.97	8.5	3.34	2.01	5.02	3.13
Merged-chr15-62120963-1	chr15	62120863	62121063	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81706.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	2.42	4.78	2.28	4.83	4.91	4.08	10.3	8.1	7.87	2.51	6.03	5.01
Merged-chr7-101343365-1	chr7	101343265	101343465	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019990, intron 4 of 6)	intron (NM_019990, intron 4 of 6)	-4704.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.23	0.25	6.85	2.41	3.27	2.51	5.31	3.28	4.72	4.02	1.51	2.82
Merged-chr2-128966728-1	chr2	128966628	128966828	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-674.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	2.02	0.5	2.28	0.0	3.27	6.9	1.33	2.5	2.75	0.0	2.01	0.0
Merged-chr7-81851838-1	chr7	81851738	81851938	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7163.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	2.83	2.52	2.28	5.63	6.55	3.45	4.98	4.01	2.36	8.03	7.54	3.76
Merged-chr10-9715847-1	chr10	9715747	9715947	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31125.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	1.62	0.5	4.56	0.4	3.27	5.02	7.64	4.79	3.34	8.03	6.53	1.88
Merged-chr6-89268443-1	chr6	89268343	89268543	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17282.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	2.42	2.01	2.28	2.41	2.86	6.59	1.33	3.48	4.52	2.51	7.03	4.07
Merged-chr12-86768021-1	chr12	86767921	86768121	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33652.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.63	8.55	5.7	3.62	4.91	14.74	3.32	4.37	6.1	7.53	7.54	5.01
Merged-chr13-52034584-1	chr13	52034484	52034684	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62157.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	1.76	6.85	6.03	4.5	5.33	3.32	4.51	3.34	0.5	2.51	5.95
Merged-chr17-17590650-1	chr17	17590550	17590750	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	33839.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.02	3.52	2.28	0.8	0.82	9.72	7.31	3.67	7.08	7.03	7.54	5.64
Merged-chr11-94391105-1	chr11	94391005	94391205	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1871.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	1.62	4.28	0.57	2.01	3.68	4.7	1.0	0.73	1.97	2.01	3.52	3.13
Merged-chr5-130360117-1	chr5	130360017	130360217	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-9341.0	NM_181045	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.81	1.26	3.99	0.0	2.45	3.76	1.66	1.01	0.39	1.0	0.0	0.94
Merged-chr6-33682063-1	chr6	33681963	33682163	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-347385.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.5	0.0	1.21	0.0	0.0	4.65	1.29	1.18	0.0	2.51	0.94
Merged-chr10-127521907-1	chr10	127521807	127522007	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028230, intron 1 of 11)	intron (NM_028230, intron 1 of 11)	537.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	3.63	4.53	1.71	1.61	2.45	9.41	4.32	2.5	2.36	6.03	4.52	0.94
Merged-chr14-30693870-1	chr14	30693770	30693970	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20979.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	1.26	1.14	2.41	5.32	5.96	1.99	5.44	3.93	3.01	2.01	2.51
Merged-chr6-67016706-1	chr6	67016606	67016806	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177558, intron 4 of 4)	intron (NM_001177558, intron 4 of 4)	-19893.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	1.62	2.01	1.14	5.63	0.82	2.2	4.98	4.43	1.38	1.0	4.02	0.63
Merged-chr2-155811930-1	chr2	155811830	155812030	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010808, intron 6 of 8)	intron (NM_010808, intron 6 of 8)	7273.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	2.83	4.53	0.57	5.63	7.36	8.78	3.99	3.64	9.24	10.04	3.52	3.45
Merged-chr6-67036127-2	chr6	67036037	67036237	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-462.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	10.09	6.79	5.7	4.02	8.18	3.76	8.97	5.97	7.67	3.51	9.04	9.71
Merged-chr11-105562650-1	chr11	105562550	105562750	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27336.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	7.67	1.01	3.42	2.01	0.82	4.39	1.33	4.01	1.57	6.03	7.54	3.13
Merged-chr4-126199940-1	chr4	126199840	126200040	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	1067.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	1.21	2.52	0.57	6.84	0.82	0.63	1.99	0.93	2.56	1.51	1.51	4.7
Merged-chr4-119847785-1	chr4	119847685	119847885	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	33107.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	2.01	1.71	4.02	1.64	5.02	0.33	5.64	3.34	0.5	2.01	1.88
Merged-chrX-140663734-1	chrX	140663634	140663834	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011845)	promoter-TSS (NM_011845)	-778.0	NM_011845	23947.0	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	2.42	2.77	0.0	1.61	5.32	6.27	5.31	4.46	8.26	5.02	2.01	4.07
Merged-chr3-138605316-1	chr3	138605216	138605416	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78048.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	1.51	2.28	1.61	1.23	0.0	3.99	4.29	0.39	0.5	4.02	4.07
Merged-chr13-32904666-1	chr13	32904566	32904766	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-6526.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	6.46	4.78	6.85	8.45	1.64	4.39	1.99	0.0	7.47	7.03	2.01	4.7
Merged-chr1-39547425-1	chr1	39547325	39547525	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028043)	TTS (NM_028043)	1415.0	NR_028555	100217461.0		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	1.62	0.25	6.28	2.41	5.73	2.2	0.66	5.92	5.7	3.01	8.04	1.25
Merged-chr6-50374863-1	chr6	50374763	50374963	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	7974.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	6.86	6.29	2.85	3.62	1.23	8.15	1.0	2.94	7.67	5.02	4.52	4.7
Merged-chr6-8029893-1	chr6	8029793	8029993	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	162724.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	2.83	5.53	2.85	8.85	1.23	0.0	0.0	0.5	1.57	0.5	0.0	0.31
Merged-chr3-149092819-1	chr3	149092719	149092919	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138184.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.85	1.01	7.42	2.41	2.45	0.63	4.65	5.27	5.51	2.01	2.01	2.19
Merged-chr10-17295385-1	chr10	17295285	17295485	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-199603.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.23	5.03	9.7	8.04	4.09	5.02	1.99	6.9	6.29	5.02	6.53	1.25
Merged-chr15-88145795-1	chr15	88145695	88145895	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-169079.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.4	0.5	3.99	0.0	2.45	0.31	6.31	4.29	0.0	0.0	0.0	0.0
Merged-chr9-95072191-1	chr9	95072091	95072291	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 12 of 15)	ORR1F|LTR|ERVL-MaLR	320362.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	2.02	2.26	3.42	1.61	2.86	0.0	3.99	6.22	1.57	1.51	3.52	6.27
Merged-chr8-123018595-1	chr8	123018495	123018695	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	MLT1E1A|LTR|ERVL-MaLR	23689.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.65	2.77	0.0	2.41	6.55	5.64	2.33	5.16	2.75	2.01	4.52	0.63
Merged-chr2-148874628-1	chr2	148874528	148874728	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	884.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.04	2.01	2.28	6.44	4.5	2.2	4.32	7.32	5.11	7.03	8.04	3.76
Merged-chr11-77346676-1	chr11	77346576	77346776	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 2 of 14)	intron (NM_177710, intron 2 of 14)	-1604.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	2.83	1.01	0.57	0.8	2.45	6.59	2.66	4.71	3.15	4.52	2.01	5.01
Merged-chr2-15029162-1	chr2	15029062	15029262	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165941, intron 8 of 11)	RLTR44B|LTR|ERVK	20150.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	1.21	1.01	0.57	2.82	0.0	0.63	2.99	2.58	9.44	8.03	8.04	4.7
Merged-chr15-84889587-1	chr15	84889487	84889687	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33458.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	8.48	4.53	10.27	6.03	2.05	3.76	3.99	5.75	6.88	3.01	8.04	4.07
Merged-chr4-59406175-1	chr4	59406075	59406275	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	32458.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.02	7.04	3.42	2.41	8.59	6.59	2.33	5.33	7.08	4.02	3.01	3.13
Merged-chr8-40496489-1	chr8	40496389	40496589	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13990.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	2.83	1.76	1.14	1.61	5.32	0.0	5.31	7.35	0.98	1.0	0.0	1.25
Merged-chr13-19833211-1	chr13	19833111	19833311	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8954.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	5.25	9.06	2.28	6.84	5.73	2.51	5.65	6.2	1.57	2.01	0.0	0.31
Merged-chr2-49359009-1	chr2	49358909	49359109	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92477.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.04	2.52	6.28	2.82	7.36	5.96	1.66	3.42	3.74	4.02	16.08	5.01
Merged-chr11-70174763-1	chr11	70174663	70174863	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	8140.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	4.44	0.5	0.0	1.61	3.27	0.0	2.99	4.43	1.18	2.01	5.02	2.51
Merged-chr1-172530682-1	chr1	172530582	172530782	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027972, intron 3 of 11)	intron (NM_027972, intron 3 of 11)	9552.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	3.63	4.28	5.13	1.21	4.91	8.78	3.65	3.7	9.44	2.01	5.02	5.64
Merged-chr6-54927076-1	chr6	54926976	54927176	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 11 of 11)	intron (NM_001171007, intron 11 of 11)	44585.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.42	1.26	4.56	0.4	5.32	6.59	5.31	2.16	10.03	13.56	6.03	5.64
Merged-chr15-75019699-1	chr15	75019599	75019799	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21668.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	1.21	5.53	0.0	1.61	1.23	2.82	0.0	0.08	6.49	7.53	12.06	7.21
Merged-chr16-49962425-1	chr16	49962325	49962525	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6595.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	4.04	2.52	1.14	2.41	6.14	9.41	5.31	5.1	4.33	2.01	6.03	3.45
Merged-chr15-99094097-1	chr15	99093997	99094197	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5387.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	4.85	5.79	6.85	2.82	0.0	3.76	3.99	2.64	5.51	9.04	13.06	9.4
Merged-chr10-117873339-1	chr10	117873239	117873439	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27365.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.44	5.53	1.14	3.22	3.68	4.39	3.32	3.9	6.29	11.05	8.54	1.57
Merged-chr13-52624994-1	chr13	52624894	52625094	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	28112.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.02	2.01	0.0	1.21	5.32	2.51	0.0	5.36	1.57	3.51	2.01	3.76
Merged-chr2-80617578-1	chr2	80617478	80617678	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024438, exon 1 of 4)	exon (NM_024438, exon 1 of 4)	364.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	3.23	4.53	9.13	5.23	7.77	9.41	7.97	4.4	3.15	8.54	8.54	5.64
Merged-chr6-52973476-1	chr6	52973376	52973576	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-63856.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	1.62	4.53	1.14	4.42	2.05	1.25	5.31	3.25	6.1	1.0	5.02	1.25
Merged-chr2-91080330-1	chr2	91080230	91080430	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-10015.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	2.42	1.26	4.56	2.41	5.32	6.9	2.66	2.5	6.29	7.53	4.52	6.58
Merged-chr7-97311692-1	chr7	97311592	97311792	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177412, exon 9 of 10)	exon (NM_001177412, exon 9 of 10)	14272.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	4.04	1.76	2.85	0.8	3.68	7.53	7.64	3.14	8.85	6.03	7.03	2.51
Merged-chr11-98937195-1	chr11	98937095	98937295	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-501.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.83	6.29	5.13	6.44	6.95	11.92	3.65	3.5	6.49	5.02	7.03	5.01
Merged-chr5-139370029-1	chr5	139369929	139370129	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029768)	promoter-TSS (NR_029768)	-284.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	8.88	3.02	0.57	4.83	6.95	4.08	1.66	5.55	5.7	3.01	8.54	3.76
Merged-chr13-52658657-1	chr13	52658557	52658757	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61775.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.85	8.05	4.56	1.61	7.36	14.42	4.98	5.05	7.47	22.09	12.56	3.45
Merged-chr6-113639739-1	chr6	113639639	113639839	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	ID_B1|SINE|B4	1272.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.25	3.02	1.14	2.41	4.91	0.94	2.66	1.49	10.62	4.52	3.52	4.7
Merged-chr7-34676294-1	chr7	34676194	34676394	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175140, intron 3 of 3)	intron (NM_175140, intron 3 of 3)	-20785.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	3.63	3.52	1.14	2.01	4.09	2.2	4.65	4.54	11.21	6.03	7.03	4.07
Merged-chr19-4305735-2	chr19	4305621	4305821	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130863, intron 1 of 21)	CpG	501.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.85	7.04	4.56	4.02	4.5	4.39	7.64	3.67	5.7	5.02	4.52	6.58
Merged-chr11-62127917-1	chr11	62127817	62128017	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029936, intron 2 of 12)	intron (NM_001029936, intron 2 of 12)	50893.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	8.48	5.28	3.42	3.62	4.91	6.9	1.33	5.44	11.21	8.03	5.53	4.39
Merged-chr11-52056393-1	chr11	52056293	52056493	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	RMER19B|LTR|ERVK	-42431.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	1.62	0.75	4.56	4.02	1.64	8.78	3.99	4.6	2.95	0.5	3.52	2.51
Merged-chr4-152103014-1	chr4	152102914	152103114	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_104381, exon 4 of 22)	non-coding (NR_104381, exon 4 of 22)	6295.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.81	4.53	5.13	0.0	2.05	1.25	0.33	0.79	0.59	3.01	3.01	2.82
Merged-chr6-145987351-1	chr6	145987251	145987451	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53229.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.23	1.01	6.85	1.61	0.82	1.57	6.98	4.32	1.97	4.02	1.51	1.57
Merged-chr4-102605163-1	chr4	102605063	102605263	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177980, exon 10 of 10)	exon (NM_001177980, exon 10 of 10)	15320.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.25	1.01	4.56	2.41	2.45	1.25	3.32	4.21	0.2	1.51	0.5	1.57
Merged-chr5-110417207-1	chr5	110417107	110417307	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-30080.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	5.25	2.01	2.28	4.02	2.45	6.27	5.31	3.98	7.67	1.51	9.55	3.13
Merged-chr10-95841545-1	chr10	95841445	95841645	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99118.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.81	2.01	2.28	3.22	1.64	1.25	9.63	5.33	1.38	2.01	1.51	3.13
Merged-chr11-105943700-1	chr11	105943600	105943800	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356374, intron 1 of 6)	intron (NM_001356374, intron 1 of 6)	787.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	5.25	3.52	10.27	4.83	3.27	8.15	1.66	4.68	3.54	5.02	4.52	2.51
Merged-chr8-46871272-1	chr8	46871172	46871372	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-115615.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	1.62	1.76	2.28	0.8	0.82	1.57	4.32	4.93	2.95	2.51	1.51	3.13
Merged-chr2-3657577-1	chr2	3657477	3657677	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-55881.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	2.42	1.76	7.42	4.02	4.5	4.08	1.99	3.95	6.69	7.53	17.08	8.77
Merged-chr19-53194281-1	chr19	53194181	53194381	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	50284.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	1.21	0.5	0.0	1.61	3.27	2.82	3.65	0.87	0.98	0.5	1.0	2.19
Merged-chr7-19173185-1	chr7	19173085	19173285	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3236.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	6.86	3.52	0.0	2.41	4.91	5.33	1.66	4.46	8.46	2.01	6.03	5.33
Merged-chr12-72664220-1	chr12	72664120	72664320	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025522, intron 1 of 6)	intron (NM_025522, intron 1 of 6)	608.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	1.21	1.26	2.85	2.82	4.91	3.76	2.33	4.51	3.54	5.02	2.51	4.07
Merged-chr4-105267309-1	chr4	105267209	105267409	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	109962.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.23	0.75	2.28	0.4	5.73	1.25	1.66	4.35	0.0	1.0	0.0	0.94
Merged-chr8-84069392-1	chr8	84069292	84069492	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	2556.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	4.04	1.01	13.69	2.41	7.77	9.41	2.66	4.15	9.24	7.03	6.53	4.07
Merged-chr16-64819284-1	chr16	64819184	64819384	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347245, intron 2 of 8)	MTC|LTR|ERVL-MaLR	32439.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.81	4.28	4.56	6.44	6.95	1.88	3.99	4.82	6.69	3.51	1.0	2.82
Merged-chr2-118729308-1	chr2	118729208	118729408	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-870.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	4.85	4.53	4.56	1.61	3.68	8.78	4.65	4.01	3.54	3.51	6.53	5.95
Merged-chr16-58299693-1	chr16	58299593	58299793	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108842.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	4.44	5.03	2.85	10.05	5.73	7.53	4.65	6.42	2.95	5.02	9.04	3.45
Merged-chr14-57827608-1	chr14	57827508	57827708	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_026401, exon 2 of 2)	3' UTR (NM_026401, exon 2 of 2)	1369.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	4.04	1.76	2.28	2.01	4.09	1.57	4.65	3.17	4.13	4.02	4.02	5.95
Merged-chr4-84837098-1	chr4	84836998	84837198	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47211.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	3.63	1.76	2.28	2.41	2.86	7.84	6.31	5.75	2.56	1.0	2.01	2.51
Merged-chr3-27605872-1	chr3	27605772	27605972	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-20877.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	2.42	2.52	2.28	2.01	5.73	4.08	1.99	3.25	2.75	2.51	2.51	2.19
Merged-chr16-20324132-1	chr16	20324032	20324232	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183158, intron 1 of 8)	intron (NM_183158, intron 1 of 8)	1272.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	4.04	0.25	0.0	0.0	4.91	4.39	5.31	4.35	0.2	3.01	1.0	4.39
Merged-chr2-80038159-1	chr2	80038059	80038259	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	743.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.5	1.71	0.0	3.27	3.76	5.31	4.99	3.15	1.0	3.52	1.25
Merged-chr1-128463749-1	chr1	128463649	128463849	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46333.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	4.44	3.27	3.99	6.84	0.82	4.7	5.31	4.82	1.97	0.5	5.02	2.51
Merged-chr10-127512095-2	chr10	127512002	127512202	+	550.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2837.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	7.67	4.02	4.56	2.82	5.73	13.48	3.32	5.83	8.06	9.54	5.02	5.33
Merged-chr2-11508747-2	chr2	11508653	11508853	+	550.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-6663.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	1.21	1.26	4.56	2.01	7.77	4.7	2.66	4.85	7.08	4.52	3.01	7.83
Merged-chr1-167392959-1	chr1	167392859	167393059	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025569, intron 1 of 5)	intron (NM_025569, intron 1 of 5)	838.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	5.65	2.01	1.14	2.01	7.77	5.02	1.0	3.11	3.93	5.52	7.54	5.01
Merged-chr14-13966708-2	chr14	13966586	13966786	+	550.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4834.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	7.27	4.02	5.7	1.61	2.45	5.02	2.66	1.91	2.56	0.5	1.51	0.0
Merged-chr5-90247824-2	chr5	90247716	90247916	+	550.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23820.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.0	2.52	11.41	8.45	6.14	4.08	7.31	4.35	8.06	7.03	8.04	5.33
Merged-chr13-12204610-2	chr13	12204494	12204694	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 24 of 32)	intron (NM_001081128, intron 24 of 32)	-18106.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	6.46	2.52	3.42	1.61	1.64	8.78	3.32	3.45	7.67	5.52	6.53	2.51
Merged-chr19-45436257-1	chr19	45436157	45436357	+	550.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360127, intron 2 of 13)	intron (NM_001360127, intron 2 of 13)	72523.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	6.46	2.26	5.7	2.41	5.73	4.08	3.65	3.93	7.67	9.54	9.04	5.95
Merged-chr11-98545987-1	chr11	98545887	98546087	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011771)	promoter-TSS (NM_011771)	44.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	5.65	7.55	0.57	0.8	6.95	8.78	6.31	2.89	5.7	5.02	2.51	7.83
Merged-chr6-51939272-1	chr6	51939172	51939372	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018773, intron 4 of 12)	intron (NM_018773, intron 4 of 12)	73277.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	4.85	0.25	2.85	1.21	8.59	2.82	5.31	5.44	5.11	2.01	4.52	2.51
Merged-chr10-93178045-1	chr10	93177945	93178145	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	MER110A|LTR|ERV1	15260.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	4.04	2.52	0.0	0.8	4.09	6.9	7.31	3.06	3.54	3.51	3.52	1.25
Merged-chr11-79252520-1	chr11	79252420	79252620	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	2175.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.27	4.53	0.0	0.8	1.64	7.53	0.66	2.5	7.47	5.52	8.54	2.51
Merged-chr6-32480955-1	chr6	32480855	32481055	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30186.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.25	2.01	1.14	7.64	6.95	0.94	0.0	5.61	2.75	1.51	6.03	3.76
Merged-chr9-49111506-1	chr9	49111406	49111606	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030709, exon 7 of 13)	exon (NM_030709, exon 7 of 13)	8727.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.0	0.75	1.14	4.02	2.05	5.02	1.99	5.27	1.38	0.0	2.01	0.63
Merged-chr4-152134786-1	chr4	152134686	152134886	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207689, intron 2 of 9)	intron (NM_207689, intron 2 of 9)	1539.0	NM_207689	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	6.86	1.01	3.42	2.41	2.05	2.2	1.0	2.44	5.11	6.03	10.05	5.01
Merged-chr13-23724968-1	chr13	23724868	23725068	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-13839.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.0	0.5	0.57	3.22	2.45	2.2	4.32	4.04	1.97	1.0	2.01	2.19
Merged-chr17-5422002-1	chr17	5421902	5422102	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-3235.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	1.62	1.51	2.28	2.41	4.91	4.7	5.65	4.09	4.52	6.53	11.56	5.64
Merged-chr7-63755174-1	chr7	63755074	63755274	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161683.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.4	2.77	1.14	3.22	2.05	3.76	4.32	4.65	3.93	1.0	3.01	5.33
Merged-chr6-49214334-1	chr6	49214234	49214434	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023670, exon 1 of 15)	exon (NM_023670, exon 1 of 15)	620.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	2.02	7.55	5.13	5.23	5.73	4.7	2.33	5.58	7.28	7.53	1.51	6.89
Merged-chr1-131977955-1	chr1	131977855	131978055	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145977, exon 3 of 5)	exon (NM_145977, exon 3 of 5)	7346.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.81	0.25	3.42	0.8	5.73	0.63	1.0	3.25	5.31	4.02	2.01	1.25
Merged-chr1-85800006-1	chr1	85799906	85800106	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	5989.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	5.25	1.26	3.42	7.24	4.91	3.45	0.66	5.13	3.54	2.51	3.52	1.88
Merged-chr7-104370786-1	chr7	104370686	104370886	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12140.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	5.65	6.54	6.85	6.84	2.05	5.64	6.98	4.65	10.23	7.53	3.52	5.95
Merged-chr8-47989902-1	chr8	47989802	47990002	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	CpG	649.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	7.27	3.27	14.26	7.64	10.23	2.82	12.29	13.35	4.92	8.54	8.54	10.34
Merged-chr13-41018545-1	chr13	41018445	41018645	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2295.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	4.04	3.52	3.42	1.21	5.73	5.02	1.99	3.98	5.9	2.51	3.52	2.51
Merged-chr19-57375333-1	chr19	57375233	57375433	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145505, intron 5 of 16)	RLTR16B_MM|LTR|ERVK	14324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	5.65	5.03	6.85	3.22	2.86	6.27	1.66	4.15	5.7	4.02	5.02	1.88
Merged-chr6-48047946-1	chr6	48047846	48048046	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	-152.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	4.04	2.01	0.57	6.03	6.55	4.7	9.97	6.0	4.33	4.02	7.03	3.13
Merged-chr3-55152243-1	chr3	55152143	55152343	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10002.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	1.21	7.04	2.28	5.63	4.5	4.7	2.66	5.69	6.49	2.01	5.02	6.89
Merged-chr2-58732467-2	chr2	58732338	58732538	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-22746.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.42	5.03	5.7	8.04	0.82	2.2	2.33	3.08	7.67	5.52	9.04	4.07
Merged-chr14-65167065-1	chr14	65166965	65167165	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68959.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.81	10.31	4.56	6.44	9.41	8.15	5.65	4.09	4.52	1.0	2.01	4.39
Merged-chr3-87114151-1	chr3	87114051	87114251	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001170985, intron 2 of 15)	L1_Mus3|LINE|L1	60596.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	6.46	6.04	0.0	10.46	3.27	7.53	3.32	0.0	4.52	1.51	5.02	2.82
Merged-chr9-25104824-1	chr9	25104724	25104924	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46957.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	3.23	1.51	2.28	8.04	4.09	5.02	2.99	4.93	3.74	3.51	7.54	2.19
Merged-chr7-102396093-1	chr7	102395993	102396193	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 3 of 11)	L2a|LINE|L2	-45602.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	2.83	0.75	2.28	1.61	4.09	4.7	1.33	4.68	2.56	3.01	4.02	1.25
Merged-chr11-53786532-1	chr11	53786432	53786632	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	MTD|LTR|ERVL-MaLR	16059.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.04	1.26	9.13	1.61	3.68	5.02	1.33	4.54	8.65	11.05	7.54	8.46
Merged-chr16-4458166-1	chr16	4458066	4458266	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-37668.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	2.42	3.02	5.7	0.8	4.5	7.21	0.66	4.04	2.95	1.0	8.54	4.7
Merged-chr17-10606323-1	chr17	10606223	10606423	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	150107.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	2.02	0.25	2.28	1.21	2.05	4.08	3.99	5.02	4.52	1.0	5.53	0.94
Merged-chr8-83699805-1	chr8	83699705	83699905	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-626.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	4.04	4.28	7.99	4.42	9.41	4.39	2.66	3.11	7.47	4.02	8.04	2.51
Merged-chr17-15536444-1	chr17	15536344	15536544	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9143.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	6.06	1.51	1.14	1.61	7.36	3.14	1.66	3.5	2.75	2.01	4.52	5.01
Merged-chr11-121781986-1	chr11	121781886	121782086	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48232.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	2.42	1.01	1.14	4.02	3.27	5.33	5.31	4.82	4.92	7.03	1.51	1.25
Merged-chr10-80174336-1	chr10	80174236	80174436	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027207, intron 2 of 2)	intron (NM_027207, intron 2 of 2)	1392.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.4	7.04	2.28	2.01	1.64	1.25	0.0	0.0	1.97	0.5	1.0	4.39
Merged-chr7-132828186-1	chr7	132828086	132828286	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347629, intron 3 of 3)	intron (NM_001347629, intron 3 of 3)	-14990.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	6.86	5.28	0.57	6.03	4.09	1.57	0.66	3.81	5.51	2.01	0.0	5.95
Merged-chr5-102045327-1	chr5	102045227	102045427	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	24594.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.25	1.26	3.99	0.8	7.77	2.82	2.99	4.99	1.77	1.0	4.52	2.19
Merged-chr19-58104766-1	chr19	58104666	58104866	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	53599.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	1.62	0.0	1.14	3.22	3.27	4.39	2.99	4.15	1.18	6.53	3.52	1.88
Merged-chr16-30184997-1	chr16	30184897	30185097	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82535.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	1.21	0.25	3.42	1.61	5.32	3.45	5.31	3.64	1.57	0.0	2.51	1.88
Merged-chr2-167702394-1	chr2	167702294	167702494	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11217.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.23	2.77	3.99	1.61	8.18	0.63	2.33	4.35	3.74	2.51	2.51	6.27
Merged-chr4-46137987-1	chr4	46137887	46138087	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033201)	promoter-TSS (NM_001033201)	488.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	2.42	2.77	2.28	6.84	1.64	3.45	4.65	4.46	4.13	4.52	3.52	7.52
Merged-chr4-33028410-1	chr4	33028310	33028510	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2913.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	3.23	1.01	3.42	2.01	1.64	1.88	4.32	3.39	3.34	6.03	4.52	3.45
Merged-chr16-30447892-1	chr16	30447792	30447992	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59362.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.62	0.25	0.0	3.22	0.82	0.63	1.33	0.98	7.47	2.51	5.53	5.01
Merged-chr16-11012922-1	chr16	11012822	11013022	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	4024.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	4.44	2.01	0.57	2.82	4.09	3.14	2.66	6.22	2.95	3.01	3.52	4.7
Merged-chr8-45454436-1	chr8	45454336	45454536	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-43817.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	9.69	6.29	6.28	8.85	5.32	4.7	1.33	7.57	3.93	3.01	2.51	10.02
Merged-chr18-75001292-1	chr18	75001192	75001392	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_028552).2	TTS (NR_028552).2	224.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	6.06	3.52	2.85	2.41	4.09	7.21	5.31	5.19	5.9	8.54	10.55	6.27
Merged-chr7-27185166-1	chr7	27185066	27185266	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4017.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	7.27	7.55	2.28	6.84	4.5	3.14	2.33	1.63	6.69	7.53	11.56	2.82
Merged-chr4-63557763-1	chr4	63557663	63557863	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-1000.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	5.25	5.79	3.99	8.85	2.86	8.15	4.65	4.12	8.26	8.03	2.51	9.71
Merged-chr3-94758165-1	chr3	94758065	94758265	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	28350.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.0	0.0	0.0	0.0	10.64	16.62	4.65	5.07	10.82	5.02	8.04	5.33
Merged-chr15-39768411-1	chr15	39768311	39768511	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_022722)	TTS (NM_022722)	22481.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.81	3.02	0.57	0.8	1.64	3.14	4.98	4.99	4.52	4.52	4.52	1.57
Merged-chr14-95154832-1	chr14	95154732	95154932	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-726422.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.0	0.0	2.28	0.0	0.41	0.0	0.66	0.48	9.64	10.04	8.54	12.22
Merged-chr17-34130072-1	chr17	34129972	34130172	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360530, intron 1 of 5)	RMER19A|LTR|ERVK	4554.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	1.21	2.26	11.41	1.61	2.86	4.39	1.66	3.5	1.38	3.01	2.51	2.19
Merged-chr10-45058297-1	chr10	45058197	45058397	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-8917.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.23	3.52	4.56	6.84	9.41	5.02	6.31	4.65	8.85	2.51	4.02	4.39
Merged-chr19-53257334-1	chr19	53257234	53257434	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2129.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	2.02	1.01	2.85	1.61	1.64	5.64	4.98	3.53	3.15	2.51	1.0	1.25
Merged-chr2-52420134-1	chr2	52420034	52420234	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	4740.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	5.65	2.52	9.13	4.42	4.09	4.7	4.65	3.5	6.29	9.04	7.54	3.76
Merged-chr1-144296500-1	chr1	144296400	144296600	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47396.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.27	4.53	4.56	0.0	3.68	8.78	1.33	1.74	8.06	7.03	1.0	0.94
Merged-chr4-118143917-1	chr4	118143817	118144017	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172382, exon 18 of 19)	exon (NM_172382, exon 18 of 19)	-8971.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.04	4.02	0.0	6.03	3.27	5.33	1.33	4.04	5.9	2.01	2.01	4.39
Merged-chr2-144043104-1	chr2	144043004	144043204	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	10002.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	8.48	6.04	6.28	13.27	3.68	0.0	3.32	0.98	2.36	1.0	0.0	3.13
Merged-chr12-38845986-1	chr12	38845886	38846086	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	62275.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	1.62	1.51	1.14	4.02	4.5	0.63	6.64	3.84	1.18	3.01	0.0	1.57
Merged-chr1-36308781-1	chr1	36308681	36308881	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1048.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	2.42	4.02	0.57	2.01	4.09	3.76	6.31	4.46	1.57	7.03	5.53	9.08
Merged-chr2-26559098-1	chr2	26558998	26559198	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21958.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	2.83	0.75	12.55	4.02	0.82	0.63	5.65	3.98	2.36	1.0	8.04	1.88
Merged-chr1-105992673-1	chr1	105992573	105992773	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	2267.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	4.85	5.79	7.99	4.02	4.09	6.59	7.64	3.73	1.57	3.51	13.06	1.88
Merged-chr6-46151831-1	chr6	46151731	46151931	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	L1M5|LINE|L1	1091770.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.62	0.0	0.0	2.41	2.45	1.25	4.65	4.74	0.0	2.01	0.0	0.31
Merged-chr3-135607898-1	chr3	135607798	135607998	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 13 of 24)	MER44A|DNA|TcMar-Tigger	83649.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.04	2.52	14.26	2.82	7.77	5.64	5.65	4.79	10.03	7.03	8.04	10.02
Merged-chr8-120740828-1	chr8	120740728	120740928	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2189.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	1.21	2.52	3.42	0.8	4.09	7.21	1.66	5.07	2.75	5.02	5.02	2.51
Merged-chr7-35741370-1	chr7	35741270	35741470	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	13084.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	4.04	4.02	11.98	10.46	7.36	5.02	9.3	14.83	0.59	2.01	0.0	0.0
Merged-chr13-77044579-1	chr13	77044479	77044679	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	90889.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.4	1.01	0.57	0.8	4.09	0.63	1.99	4.23	0.79	0.0	0.0	0.94
Merged-chr2-173528149-1	chr2	173528049	173528249	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028158, intron 3 of 3)	intron (NM_028158, intron 3 of 3)	5557.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	3.23	4.53	1.71	3.62	4.09	2.51	0.66	6.39	4.92	7.53	2.01	2.51
Merged-chr10-23522800-1	chr10	23522700	23522900	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172857.0	NM_010167	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	2.42	0.25	1.14	0.0	0.41	2.51	0.0	3.42	5.51	1.0	10.05	1.57
Merged-chr15-103375870-1	chr15	103375770	103375970	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9079.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	4.85	6.79	6.85	7.64	7.36	10.98	4.32	2.16	8.46	7.53	4.52	2.19
Merged-chr7-25782831-1	chr7	25782731	25782931	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	5902.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	1.62	3.02	3.42	0.8	2.86	5.02	0.0	3.84	2.75	2.51	2.51	0.94
Merged-chr10-51677735-1	chr10	51677635	51677835	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159389)	promoter-TSS (NM_001159389)	-25.0	NM_001159389	320995.0	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding	4.04	2.77	7.99	2.01	3.27	4.39	4.98	5.55	1.38	1.51	2.51	5.64
Merged-chr3-145950192-1	chr3	145950092	145950292	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12178.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	2.02	3.77	0.57	0.8	3.68	6.27	6.31	5.44	2.16	1.0	4.52	2.82
Merged-chr9-95578636-1	chr9	95578536	95578736	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18819.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.81	1.01	0.0	6.03	4.91	3.76	4.32	5.13	5.11	4.52	4.52	2.19
Merged-chr3-96730022-1	chr3	96729922	96730122	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	2411.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.04	5.28	7.42	6.44	4.91	7.21	2.33	5.13	7.08	10.04	6.03	4.39
Merged-chr4-132076891-1	chr4	132076791	132076991	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1578.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.44	4.28	2.85	4.02	4.09	4.08	6.98	3.59	3.93	4.52	5.02	2.82
Merged-chr10-116849012-1	chr10	116848912	116849112	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033333, intron 4 of 24)	intron (NM_001033333, intron 4 of 24)	47867.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	2.42	2.52	4.56	4.42	2.05	1.88	3.65	4.46	2.75	2.01	4.02	2.51
Merged-chr8-119676594-1	chr8	119676494	119676694	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023395, intron 1 of 6)	intron (NM_023395, intron 1 of 6)	10229.0	NM_023395	67866.0	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	6.46	5.03	1.71	8.04	7.36	7.84	1.33	3.7	3.74	6.03	10.55	6.27
Merged-chr17-46484715-1	chr17	46484615	46484815	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162864, intron 1 of 14)	intron (NM_001162864, intron 1 of 14)	2960.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	5.65	6.04	1.71	2.41	5.32	8.78	1.99	3.93	3.34	3.01	2.51	7.52
Merged-chr8-122889573-1	chr8	122889473	122889673	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 9 of 12)	intron (NM_001081379, intron 9 of 12)	41199.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.23	0.5	0.0	0.0	0.0	1.57	1.99	1.35	2.36	2.51	7.54	2.82
Merged-chr16-76325130-1	chr16	76325030	76325230	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	47919.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.23	2.26	4.56	2.01	2.45	4.08	5.98	6.53	5.9	3.51	5.02	1.88
Merged-chr9-16267523-1	chr9	16267423	16267623	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	110708.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.83	1.01	3.42	4.02	4.91	0.31	1.66	3.73	3.34	2.01	3.52	0.31
Merged-chr1-157382118-1	chr1	157382018	157382218	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	B4A|SINE|B4	-30234.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	1.21	0.0	0.0	0.0	0.0	0.63	4.65	3.36	0.98	1.51	1.51	1.25
Merged-chr3-54013366-1	chr3	54013266	54013466	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-142691.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.81	0.25	0.0	0.0	2.45	1.57	1.0	4.35	9.24	4.02	13.06	6.27
Merged-chr6-106441026-1	chr6	106440926	106441126	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308011.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.0	1.01	1.71	1.61	7.77	3.14	6.64	3.5	3.93	4.02	2.51	0.0
Merged-chr14-36937573-1	chr14	36937473	36937673	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027045, intron 3 of 10)	intron (NM_027045, intron 3 of 10)	-2005.0	NM_028407	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	2.42	2.26	5.7	6.03	8.18	2.82	4.65	4.68	11.6	3.01	2.51	4.39
Merged-chr6-100192866-1	chr6	100192766	100192966	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94492.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.44	3.02	6.85	4.42	3.27	1.57	5.31	4.96	1.97	1.51	1.0	2.51
Merged-chr7-49074624-1	chr7	49074524	49074724	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87534.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	2.02	3.52	5.13	4.83	6.55	3.14	1.66	7.6	2.95	3.01	3.52	2.19
Merged-chr7-4657009-1	chr7	4656909	4657109	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	1941.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	2.42	6.29	12.55	2.82	3.27	6.9	5.98	2.47	5.9	8.03	6.53	4.07
Merged-chr1-53816118-1	chr1	53816018	53816218	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-30903.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	4.04	1.51	4.56	2.01	5.32	3.14	3.65	4.32	3.74	2.51	5.02	0.0
Merged-chr4-59416597-1	chr4	59416497	59416697	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	22036.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.23	3.27	5.7	6.84	2.05	1.57	2.66	4.35	4.13	7.03	4.52	4.07
Merged-chr15-73134704-1	chr15	73134604	73134804	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 3 of 18)	MTD|LTR|ERVL-MaLR	44292.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	5.65	1.01	3.99	8.04	3.68	3.76	2.33	7.63	4.72	10.54	9.55	4.39
Merged-chr12-3236388-1	chr12	3236288	3236488	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	597.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	5.25	5.28	4.56	4.83	3.68	10.66	1.99	3.39	18.69	4.02	9.55	10.65
Merged-chr15-88828414-1	chr15	88828314	88828514	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8768.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	2.83	2.52	4.56	3.62	2.45	5.96	1.99	3.64	10.42	5.02	5.53	4.39
Merged-chr1-144292072-1	chr1	144291972	144292172	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1Md_T|LINE|L1	-42968.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.08	10.56	2.28	0.0	4.91	23.52	2.66	0.64	8.85	5.02	2.51	5.33
Merged-chr8-125052244-2	chr8	125052159	125052359	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	-1936.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	8.48	5.79	3.42	2.41	7.36	8.78	6.31	3.62	12.59	2.51	7.54	5.33
Merged-chrX-168824366-2	chrX	168824268	168824468	+	549.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009707, intron 1 of 12)	Lx2B2|LINE|L1	29269.0	NM_009707	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	9.29	5.53	8.56	8.85	8.18	0.94	4.65	5.33	9.44	8.03	7.03	4.07
Merged-chr7-128400854-2	chr7	128400747	128400947	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	17325.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.65	7.29	7.99	2.82	3.68	1.88	3.99	5.47	9.44	6.03	10.55	4.7
Merged-chr2-104001245-2	chr2	104001129	104001329	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175161, intron 3 of 4)	B2_Mm2|SINE|B2	-26570.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	8.48	4.02	2.28	5.63	8.18	4.39	9.63	4.37	2.95	4.52	17.08	5.33
Merged-chr4-126428533-1	chr4	126428433	126428633	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153402, intron 1 of 18)	intron (NM_153402, intron 1 of 18)	1009.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.85	3.27	3.99	4.83	3.68	5.33	4.98	4.46	7.08	4.02	3.52	6.89
Merged-chr16-92413180-1	chr16	92413080	92413280	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-13102.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.85	5.53	1.14	1.61	2.05	5.33	5.98	3.67	4.33	3.51	1.51	2.51
Merged-chr19-7240480-2	chr19	7240396	7240596	+	549.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027643, intron 1 of 7)	intron (NM_027643, intron 1 of 7)	726.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	1.21	9.56	1.14	9.65	3.68	0.31	3.65	3.9	4.52	2.01	7.54	8.46
Merged-chr1-86154107-2	chr1	86154019	86154219	+	549.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-661.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	2.42	6.54	0.0	4.02	7.36	6.27	3.65	2.55	4.72	5.52	3.01	5.64
Merged-chr8-124844681-1	chr8	124844581	124844781	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	18348.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	1.21	1.51	0.0	0.0	4.09	5.33	3.99	4.46	0.0	2.51	1.51	1.88
Merged-chr11-20166686-1	chr11	20166586	20166786	+	549.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-34726.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	9.29	2.52	13.69	9.65	5.73	4.39	2.66	2.41	4.72	2.51	3.01	2.19
Merged-chr2-49393571-1	chr2	49393471	49393671	+	549.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-57915.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	1.21	4.02	0.57	3.22	8.59	7.21	9.3	4.74	3.15	3.51	3.01	1.25
Merged-chr9-48532492-1	chr9	48532392	48532592	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	37149.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	4.04	3.52	4.56	6.44	1.64	5.33	4.98	3.39	6.69	3.01	4.02	3.45
Merged-chr8-10839163-1	chr8	10839063	10839263	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	43291.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.25	7.55	5.13	11.66	3.27	0.0	1.33	6.14	4.33	0.0	0.5	0.31
Merged-chr10-93163484-1	chr10	93163384	93163584	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_035452)	TTS (NR_035452)	699.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	5.25	1.76	3.42	6.44	2.05	1.88	4.65	4.71	9.83	5.02	4.52	4.07
Merged-chr18-65936432-1	chr18	65936332	65936532	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013833, intron 2 of 2)	intron (NM_013833, intron 2 of 2)	2657.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	5.65	1.51	3.42	8.04	6.55	4.08	3.65	4.68	3.15	4.02	1.51	6.58
Merged-chr4-144974651-1	chr4	144974551	144974751	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	81514.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.23	5.53	3.42	1.21	6.95	5.64	2.66	4.07	7.28	5.02	2.01	0.31
Merged-chr5-140614217-1	chr5	140614117	140614317	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008494, exon 7 of 8)	exon (NM_008494, exon 7 of 8)	6876.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.86	7.55	2.85	0.8	3.27	1.88	0.0	0.17	0.59	4.52	0.0	1.25
Merged-chr10-59921071-1	chr10	59920971	59921171	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30699.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	5.25	2.52	3.42	3.22	6.55	4.7	3.99	3.62	4.72	4.02	4.52	1.25
Merged-chr11-58939580-1	chr11	58939480	58939680	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-674.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	5.25	4.02	1.14	3.62	6.55	8.78	4.32	2.38	6.69	7.53	4.52	4.7
Merged-chr10-96541048-1	chr10	96540948	96541148	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-75953.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.81	5.53	3.42	2.41	3.27	1.25	4.32	3.25	2.16	8.03	4.02	2.82
Merged-chr6-124448627-1	chr6	124448527	124448727	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	14117.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	4.04	3.27	1.14	0.8	7.36	5.96	2.66	3.31	7.47	7.03	7.54	6.27
Merged-chr14-122645709-1	chr14	122645609	122645809	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	111381.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	3.23	4.53	4.56	4.02	5.32	4.08	2.66	4.37	4.92	6.03	4.02	7.83
Merged-chr14-76505062-1	chr14	76504962	76505162	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009366, intron 1 of 2)	intron (NM_009366, intron 1 of 2)	552.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	7.67	4.02	2.28	7.24	4.5	5.33	5.65	5.64	6.88	5.52	7.54	1.88
Merged-chr12-16868873-1	chr12	16868773	16868973	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26105.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.85	2.77	7.42	0.8	11.05	3.76	1.33	5.21	0.98	4.52	1.51	4.39
Merged-chr2-32835906-1	chr2	32835806	32836006	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	11326.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	5.65	5.03	3.42	4.83	6.55	3.14	5.98	5.1	6.1	2.51	1.0	5.33
Merged-chr1-135467152-1	chr1	135467052	135467252	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173437, intron 9 of 28)	intron (NM_173437, intron 9 of 28)	-12469.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	8.08	4.28	3.99	5.23	2.45	8.15	7.97	4.37	6.49	7.03	9.55	0.63
Merged-chr10-9674866-1	chr10	9674766	9674966	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177271, exon 1 of 2)	exon (NM_177271, exon 1 of 2)	342.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.81	4.53	0.57	0.8	0.82	1.25	6.98	5.1	2.16	2.51	3.01	5.95
Merged-chr18-39304348-1	chr18	39304248	39304448	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 19 of 21)	intron (NM_001361073, intron 19 of 21)	182897.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.85	3.27	4.56	1.61	0.82	5.02	3.32	5.33	4.33	5.02	3.52	5.01
Merged-chr4-118360963-1	chr4	118360863	118361063	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	964.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	2.42	2.77	1.71	5.63	8.18	7.21	5.31	3.59	3.93	1.0	1.0	0.0
Merged-chr14-9638212-1	chr14	9638112	9638312	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	MIR3|SINE|MIR	-245883.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.02	1.01	2.28	6.03	6.14	2.2	3.32	4.91	5.7	1.51	5.53	3.13
Merged-chr1-173935054-1	chr1	173934954	173935154	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001302651, exon 5 of 8)	exon (NM_001302651, exon 5 of 8)	7438.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	6.06	5.28	2.85	3.22	11.45	8.15	2.66	3.06	3.15	8.54	11.05	2.19
Merged-chr7-122207498-1	chr7	122207398	122207598	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11998.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.81	2.26	1.71	4.42	5.32	3.14	4.32	11.3	10.23	3.01	8.04	5.64
Merged-chr2-103007774-1	chr2	103007674	103007874	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65739.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.4	3.02	2.28	0.8	7.36	0.94	4.32	4.51	0.98	2.01	3.52	2.51
Merged-chr13-10344588-1	chr13	10344488	10344688	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	16215.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	1.62	2.52	1.71	1.61	6.55	3.45	1.99	5.83	2.36	2.01	1.51	3.76
Merged-chr15-55191902-1	chr15	55191802	55192002	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037937, intron 4 of 8)	L1PB4|LINE|L1	58466.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	2.02	0.0	0.0	0.8	2.86	2.51	4.32	4.12	1.38	0.0	1.51	1.57
Merged-chr15-99876928-1	chr15	99876828	99877028	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	-1472.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	8.08	3.27	3.42	4.83	6.95	5.33	5.31	4.07	13.18	8.54	7.54	3.13
Merged-chr2-132516460-1	chr2	132516360	132516560	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028286, intron 2 of 3)	ORR1A2|LTR|ERVL-MaLR	25732.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	4.85	4.53	6.85	0.8	7.77	7.53	2.66	3.95	3.93	4.02	9.04	7.83
Merged-chr6-37046433-1	chr6	37046333	37046533	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 12 of 32)	intron (NM_001347104, intron 12 of 32)	-236254.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	2.42	0.5	1.14	3.22	4.09	5.02	2.99	4.6	6.49	4.52	7.03	2.19
Merged-chr12-74009651-1	chr12	74009551	74009751	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	11890.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	6.46	2.26	0.57	4.42	7.77	3.14	3.65	3.87	0.98	11.05	2.51	1.25
Merged-chr1-80413968-1	chr1	80413868	80414068	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31964.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	1.62	2.01	2.28	3.22	2.45	0.31	7.31	4.15	3.34	0.5	0.5	1.88
Merged-chr12-86146438-1	chr12	86146338	86146538	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029601, intron 4 of 7)	L1MA6|LINE|L1	-22903.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	1.62	2.01	5.13	2.41	4.09	9.09	5.65	3.81	7.08	13.56	2.01	7.83
Merged-chr7-19083437-1	chr7	19083337	19083537	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190491)	promoter-TSS (NM_001190491)	-412.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	6.86	4.28	2.85	4.02	3.27	3.76	4.32	3.2	5.11	8.03	11.05	7.83
Merged-chr8-7964876-1	chr8	7964776	7964976	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	695897.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.81	1.51	0.57	1.61	1.64	3.14	5.31	10.37	7.28	3.51	11.05	3.45
Merged-chr19-5814323-1	chr19	5814223	5814423	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11651.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	3.63	3.77	0.0	0.4	4.09	4.7	1.0	2.78	4.92	0.5	2.51	1.25
Merged-chr10-28304032-1	chr10	28303932	28304132	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	229212.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.81	0.5	2.28	4.83	1.23	0.63	5.31	4.91	1.97	1.51	0.5	1.57
Merged-chr5-66242095-1	chr5	66241995	66242195	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17803.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.44	3.02	1.71	0.8	2.05	3.14	3.99	1.77	7.08	8.54	3.01	3.13
Merged-chr11-70597491-1	chr11	70597391	70597591	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-18403.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	4.04	4.78	9.13	4.42	2.45	5.33	2.66	3.36	6.88	6.53	4.02	3.76
Merged-chr11-106093324-1	chr11	106093224	106093424	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	MIRc|SINE|MIR	8422.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.65	3.27	5.7	0.8	4.91	12.86	0.0	3.64	5.31	8.03	5.02	3.45
Merged-chr1-30947721-1	chr1	30947621	30947821	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1989.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	1.62	1.01	0.57	0.4	5.32	1.88	0.66	4.01	0.79	0.5	2.51	2.19
Merged-chr2-112401986-1	chr2	112401886	112402086	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024254, intron 1 of 9)	HAL1|LINE|L1	22775.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	3.23	5.79	3.42	3.22	3.27	5.64	3.65	2.66	2.36	4.02	1.0	9.08
Merged-chr2-166228594-1	chr2	166228494	166228694	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45314.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	2.42	2.26	5.13	0.0	5.73	2.82	2.99	5.55	6.29	7.03	5.02	3.13
Merged-chr3-142393838-1	chr3	142393738	142393938	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1858.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.44	2.26	1.14	0.0	5.73	6.59	3.32	4.68	4.33	3.51	6.03	1.88
Merged-chr19-6400870-1	chr19	6400770	6400970	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 1 of 16)	intron (NM_011242, intron 1 of 16)	287.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	4.44	4.02	2.28	2.82	3.27	5.02	1.33	3.36	7.67	4.02	2.01	6.89
Merged-chr7-63931377-1	chr7	63931277	63931477	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7538.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.85	6.04	7.42	3.22	8.18	11.6	3.32	2.83	8.26	4.02	10.05	8.14
Merged-chr12-40600595-1	chr12	40600495	40600695	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	154542.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	1.62	1.51	3.42	5.23	2.86	3.76	6.64	5.41	2.95	4.02	0.0	0.94
Merged-chr7-46606687-1	chr7	46606587	46606787	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	33120.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	1.21	1.01	5.7	0.8	6.55	5.33	1.99	4.04	2.56	2.51	2.51	3.45
Merged-chr19-59194164-1	chr19	59194064	59194264	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-24135.0	NM_009501	22326.0	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	5.25	4.02	6.85	3.62	2.45	4.08	3.32	4.54	3.93	3.01	2.01	8.46
Merged-chr7-101297839-1	chr7	101297739	101297939	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_152152, intron 3 of 16)	intron (NR_152152, intron 3 of 16)	4249.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.4	5.53	1.14	4.42	1.64	2.82	0.0	1.63	5.9	1.51	4.02	2.51
Merged-chr17-69234332-1	chr17	69234232	69234432	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	ORR1E|LTR|ERVL-MaLR	42874.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.81	1.01	2.85	3.22	5.32	1.25	3.65	4.99	4.72	1.0	4.52	4.7
Merged-chr7-101321075-1	chr7	101320975	101321175	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019990)	promoter-TSS (NM_019990)	-38.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	7.67	3.77	2.85	4.83	4.5	2.2	4.32	3.7	4.92	6.03	5.53	4.39
Merged-chr8-94093536-1	chr8	94093436	94093636	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5275.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	2.83	4.53	7.42	9.65	2.86	7.21	0.33	4.71	3.54	5.52	5.53	3.76
Merged-chr11-47033336-1	chr11	47033236	47033436	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	222537.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.04	6.29	11.41	8.04	7.36	4.08	1.99	3.36	7.67	2.51	11.05	0.0
Merged-chr15-27643129-1	chr15	27643029	27643229	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12436.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	5.65	4.78	3.99	5.23	5.32	6.59	3.65	3.53	4.13	9.04	10.55	2.19
Merged-chr15-101846134-1	chr15	101846034	101846234	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008473, exon 9 of 9)	exon (NM_008473, exon 9 of 9)	4652.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	9.29	3.27	1.14	8.45	6.55	4.7	5.31	2.75	5.51	3.01	6.53	3.45
Merged-chr13-96107808-1	chr13	96107708	96107908	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	24769.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	1.62	2.52	3.42	2.41	0.0	5.02	1.66	0.34	10.03	5.02	9.04	3.13
Merged-chr1-128824400-1	chr1	128824300	128824500	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-232101.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.27	2.01	0.57	2.41	2.05	0.94	3.32	4.88	4.33	3.01	6.53	3.76
Merged-chr12-64967378-1	chr12	64967278	64967478	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1636.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	5.65	6.04	2.85	3.22	3.68	6.59	10.96	4.07	6.88	5.52	3.52	3.76
Merged-chr10-122738062-1	chr10	122737962	122738162	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	58747.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.42	4.53	3.99	0.4	3.27	4.39	1.0	3.31	8.06	1.0	4.52	6.89
Merged-chr8-64618834-1	chr8	64618734	64618934	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013494, intron 2 of 8)	intron (NM_013494, intron 2 of 8)	74275.0	NM_013494	12876.0	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|NF-alpha1|R74677|fat	carboxypeptidase E	protein-coding	1.62	1.76	2.28	6.84	2.05	4.08	6.31	4.49	4.13	1.51	6.53	4.07
Merged-chr9-65574854-1	chr9	65574754	65574954	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	5233.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.27	7.8	3.42	6.03	2.86	6.9	2.33	3.53	8.26	4.52	1.51	7.83
Merged-chr7-132736253-1	chr7	132736153	132736353	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	40663.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.83	1.76	3.42	6.44	1.23	5.64	1.33	4.21	1.77	2.51	4.52	2.51
Merged-chr15-72813102-1	chr15	72813002	72813202	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-2778.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.42	0.25	1.14	2.41	0.0	2.51	3.99	2.13	3.93	1.0	2.01	1.57
Merged-chr3-142588110-1	chr3	142588010	142588210	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6737.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	1.62	1.26	4.56	2.41	2.45	5.33	0.66	3.14	2.56	1.0	3.01	0.94
Merged-chr11-115285371-1	chr11	115285271	115285471	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_178035, exon 4 of 6)	exon (NM_178035, exon 4 of 6)	-8402.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	1.21	7.29	1.14	8.04	4.91	1.57	1.0	2.21	4.92	3.01	9.04	5.95
Merged-chr2-158116255-1	chr2	158116155	158116355	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009373)	TTS (NM_009373)	-24458.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	2.83	7.29	2.85	3.22	5.32	1.25	1.33	3.03	9.05	11.05	4.02	1.57
Merged-chr10-118865169-1	chr10	118865069	118865269	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	3734.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.81	4.53	2.85	4.02	4.91	5.02	1.33	3.42	5.31	7.03	2.51	5.33
Merged-chr14-7774211-1	chr14	7774111	7774311	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-43746.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	2.42	7.8	2.28	1.21	7.77	7.84	6.31	3.62	5.11	4.52	7.54	5.95
Merged-chr12-103371921-1	chr12	103371821	103372021	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4973.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	2.42	7.55	5.7	7.64	2.05	0.94	0.33	4.26	12.98	1.51	8.04	4.39
Merged-chr5-34519126-1	chr5	34519026	34519226	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-5147.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	7.67	5.53	1.71	2.41	8.18	3.76	1.99	2.3	3.15	5.52	3.01	2.51
Merged-chr7-100502014-1	chr7	100501914	100502114	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	8656.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.46	7.04	0.0	3.22	4.91	10.35	1.66	1.32	2.36	1.0	1.51	5.33
Merged-chr2-52845545-1	chr2	52845445	52845645	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	1.62	2.77	1.14	2.41	2.45	4.39	3.99	8.52	1.57	6.53	7.54	2.19
Merged-chr13-44657803-1	chr13	44657703	44657903	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72971.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.81	2.26	0.0	2.41	0.0	3.14	0.33	1.35	2.16	5.52	4.52	7.83
Merged-chr4-57026019-1	chr4	57025919	57026119	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-35628.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.0	1.51	5.7	0.0	2.45	6.27	3.32	5.24	0.59	2.01	1.0	0.94
Merged-chr19-11611676-1	chr19	11611576	11611776	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.0	3.27	0.57	0.0	0.82	1.25	2.66	0.81	8.06	4.52	9.04	1.57
Merged-chr1-143922591-1	chr1	143922491	143922691	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81558.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	1.01	0.0	0.0	1.64	0.63	4.32	3.2	1.38	4.02	3.52	0.31
Merged-chr17-56475439-1	chr17	56475339	56475539	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	1041.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.23	3.27	1.14	3.22	2.86	2.51	2.66	3.03	2.95	5.02	3.52	4.39
Merged-chr2-179648693-1	chr2	179648593	179648793	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	206262.0	NM_009867	12561.0	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	3.23	2.01	2.28	2.01	2.05	5.02	1.33	3.48	2.36	0.0	0.0	0.63
Merged-chr13-28860408-1	chr13	28860308	28860508	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	25014.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	2.42	0.5	0.0	0.8	2.45	0.63	7.64	4.88	0.0	2.01	2.01	0.31
Merged-chr5-30962476-1	chr5	30962376	30962576	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2149.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	9.29	3.27	3.42	4.42	5.32	1.57	3.32	4.35	8.85	4.02	0.5	8.14
Merged-chr13-47173382-1	chr13	47173282	47173482	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	L1MC3|LINE|L1	-20621.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.81	2.01	3.42	3.22	6.14	8.78	1.99	4.04	5.9	6.03	7.54	1.88
Merged-chr17-56111946-1	chr17	56111846	56112046	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025874, exon 9 of 9)	3' UTR (NM_025874, exon 9 of 9)	-2144.0	NM_020568	57435.0	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	3.63	2.52	7.99	5.63	4.09	4.08	1.33	4.18	1.97	5.52	6.53	2.19
Merged-chr6-87085242-1	chr6	87085142	87085342	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013528, intron 15 of 18)	intron (NM_013528, intron 15 of 18)	-19504.0	NM_001167938	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.63	2.01	0.0	2.01	2.05	5.02	4.32	4.37	1.38	3.51	1.0	3.76
Merged-chr11-118534902-1	chr11	118534802	118535002	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285436, intron 3 of 13)	intron (NM_001285436, intron 3 of 13)	58070.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	1.21	4.02	1.14	0.8	0.41	5.96	2.99	4.49	1.18	3.01	3.52	7.21
Merged-chr1-138848914-1	chr1	138848814	138849014	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_010714	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	4.04	3.02	0.57	5.23	0.0	0.31	3.99	3.59	1.57	2.51	1.0	5.64
Merged-chr7-118802037-1	chr7	118801937	118802137	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	53576.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.44	3.52	11.41	6.44	7.36	4.39	3.32	4.04	7.67	3.01	9.55	7.21
Merged-chr2-26747604-1	chr2	26747504	26747704	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	15884.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	2.02	3.02	0.0	2.01	0.0	5.33	7.64	3.17	7.28	1.0	11.56	3.45
Merged-chr12-69924206-1	chr12	69924106	69924306	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178628, intron 2 of 14)	B3|SINE|B2	-31043.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	8.08	3.02	5.7	1.61	6.55	7.53	2.99	3.06	7.67	4.52	12.56	2.51
Merged-chr3-96292770-1	chr3	96292670	96292870	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	1199.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	2.42	1.51	2.28	2.82	1.64	2.51	4.65	3.93	3.93	0.5	2.51	2.19
Merged-chr13-29985659-1	chr13	29985559	29985759	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010093, exon 1 of 7)	exon (NM_010093, exon 1 of 7)	404.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	1.21	8.55	11.41	6.03	9.82	7.21	2.99	5.92	11.21	9.54	6.03	8.14
Merged-chr9-45489622-1	chr9	45489522	45489722	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	MTD|LTR|ERVL-MaLR	-58390.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	1.14	0.0	1.64	0.0	0.0	0.0	7.67	10.04	7.54	7.21
Merged-chr18-36403385-1	chr18	36403285	36403485	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_026027)	TTS (NM_026027)	51110.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	8.48	10.06	7.99	3.22	4.09	3.76	1.33	2.52	2.95	2.51	4.02	5.33
Merged-chr7-4225343-2	chr7	4225252	4225452	+	548.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	-12402.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	3.23	1.76	7.99	1.61	4.5	3.14	3.32	5.8	9.24	10.54	4.52	7.83
Merged-chr5-29681864-1	chr5	29681764	29681964	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-54034.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	3.23	3.77	5.7	1.61	4.09	5.64	7.97	3.39	3.54	6.53	4.02	1.88
Merged-chr6-124425269-2	chr6	124425180	124425380	+	548.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-9425.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	4.85	6.54	7.42	4.83	11.86	3.45	1.66	3.2	8.46	6.53	8.54	5.33
Merged-chr7-133632672-2	chr7	133632571	133632771	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5004.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	8.48	3.02	3.42	5.23	6.55	2.82	1.99	3.5	7.67	2.51	12.06	5.01
Merged-chr13-92635854-1	chr13	92635754	92635954	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172588, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	24716.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	2.83	3.52	1.14	6.44	10.64	1.88	7.31	5.5	9.05	2.51	4.02	0.0
Merged-chr16-25041447-1	chr16	25041347	25041547	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18192.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	1.62	1.01	7.42	4.42	6.14	2.51	6.64	4.07	4.13	2.01	5.02	1.88
Merged-chr11-53765269-1	chr11	53765169	53765369	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1615.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	9.29	3.27	5.13	6.44	11.05	5.64	2.66	4.65	7.47	6.53	3.52	4.7
Merged-chr10-128743437-1	chr10	128743337	128743537	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358745, intron 3 of 25)	intron (NM_001358745, intron 3 of 25)	639.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	1.62	5.03	4.56	4.02	7.77	2.82	2.33	4.23	6.88	4.02	8.04	4.39
Merged-chr1-82987968-1	chr1	82987868	82988068	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50480.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	5.25	4.02	2.28	8.85	8.59	6.27	1.33	5.38	9.05	2.51	0.5	3.45
Merged-chr1-185331535-1	chr1	185331435	185331635	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-624.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	6.46	4.28	4.56	2.41	4.5	7.21	0.33	1.93	8.85	13.05	9.04	3.76
Merged-chr2-76672451-1	chr2	76672351	76672551	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355080, intron 1 of 4)	intron (NM_001355080, intron 1 of 4)	647.0	NM_001355079	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0.81	4.53	4.56	9.65	3.27	3.14	4.32	4.26	2.16	1.51	6.03	5.95
Merged-chr13-46930957-1	chr13	46930857	46931057	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1239.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.04	2.26	4.56	6.03	5.73	5.96	2.99	1.93	7.28	4.52	9.04	3.13
Merged-chr1-157502783-1	chr1	157502683	157502883	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-4013.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	5.25	2.26	4.56	3.62	4.5	1.25	1.99	5.94	5.11	7.03	3.01	1.25
Merged-chr8-70488597-1	chr8	70488497	70488697	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1239.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	8.48	4.53	3.99	6.44	4.91	2.2	2.33	5.97	3.93	2.01	9.55	0.94
Merged-chr12-79842411-1	chr12	79842311	79842511	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	82322.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.86	5.03	2.28	0.8	0.41	3.14	5.31	4.68	0.59	4.02	8.54	5.01
Merged-chr3-105803155-1	chr3	105803055	105803255	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1774.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	2.02	3.77	5.7	4.02	9.82	4.39	1.0	3.95	5.51	7.03	0.0	4.7
Merged-chr16-16535464-1	chr16	16535364	16535564	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	RMER10A|LTR|ERVL	-8053.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.81	1.01	0.0	0.8	4.09	2.82	2.99	1.99	7.08	2.01	9.55	1.88
Merged-chr17-35381023-1	chr17	35380923	35381123	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	1406.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	9.29	4.53	3.99	6.84	9.41	11.29	4.65	1.35	7.47	7.53	1.51	5.95
Merged-chr5-123580873-1	chr5	123580773	123580973	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7858.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	5.65	3.52	12.55	4.02	4.5	5.96	2.66	6.7	2.95	1.51	3.01	3.45
Merged-chr16-92385409-1	chr16	92385309	92385509	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1E|LTR|ERVL-MaLR	-2726.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	5.65	6.04	1.14	2.41	5.73	5.02	6.98	3.03	3.93	8.54	2.01	3.13
Merged-chr9-35103653-1	chr9	35103553	35103753	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-13075.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	8.08	1.01	2.28	6.84	4.09	0.63	1.66	3.45	10.82	3.01	9.04	4.07
Merged-chr10-81179152-1	chr10	81179052	81179252	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_028549)	TTS (NR_028549)	191.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	2.83	4.02	0.0	4.02	6.55	0.94	2.33	4.46	2.75	2.51	2.51	0.94
Merged-chr10-37235704-1	chr10	37235604	37235804	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96778.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.63	1.76	2.28	6.44	7.36	3.14	3.32	3.9	4.33	3.01	7.03	3.13
Merged-chr8-93011684-1	chr8	93011584	93011784	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36508.0	NM_001013764	244595.0	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.81	2.01	1.14	1.61	6.14	2.2	5.98	3.79	7.28	10.54	7.03	2.82
Merged-chr1-148993800-1	chr1	148993700	148993900	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	928639.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.04	4.53	1.71	1.61	3.68	3.14	4.98	6.76	8.46	5.52	11.56	2.19
Merged-chr9-62839411-1	chr9	62839311	62839511	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033175, intron 1 of 6)	intron (NM_001033175, intron 1 of 6)	624.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	1.62	3.52	2.85	4.02	9.82	5.33	1.66	4.85	5.7	2.51	4.02	3.76
Merged-chr12-112913961-1	chr12	112913861	112914061	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010588, exon 15 of 26)	exon (NM_010588, exon 15 of 26)	6580.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	1.01	1.14	2.01	1.64	5.33	3.32	4.96	0.59	1.51	0.5	2.51
Merged-chr3-35482446-1	chr3	35482346	35482546	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	183717.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	3.63	0.0	2.28	0.0	1.64	1.25	6.98	4.71	1.57	1.0	5.02	0.31
Merged-chr15-76523171-1	chr15	76523071	76523271	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1042.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	1.62	1.76	1.14	1.61	3.68	1.88	1.99	3.0	1.77	2.51	8.04	0.63
Merged-chr7-120634420-1	chr7	120634320	120634520	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-769.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	3.63	0.75	3.99	0.8	2.45	1.25	3.32	2.61	4.33	1.0	4.52	5.64
Merged-chr11-53785479-1	chr11	53785379	53785579	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_033332)	TTS (NR_033332)	15006.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	12.92	2.77	6.85	2.41	8.59	6.27	1.33	3.59	2.75	4.02	2.51	3.45
Merged-chr18-5187351-1	chr18	5187251	5187451	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21620.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	3.23	1.26	1.14	2.41	5.73	2.51	4.65	3.62	1.38	2.01	4.52	0.94
Merged-chr5-137122810-1	chr5	137122710	137122910	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6603.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	6.86	3.27	2.85	4.83	7.36	12.23	3.32	3.95	11.8	7.03	6.53	4.39
Merged-chr5-143312079-1	chr5	143311979	143312179	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172726, intron 2 of 5)	intron (NM_172726, intron 2 of 5)	3281.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	10.9	4.53	4.56	7.64	2.86	5.02	2.66	5.36	6.69	4.52	9.04	2.51
Merged-chr2-90543300-1	chr2	90543200	90543400	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37347.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.62	3.02	3.99	1.21	5.32	3.45	3.99	5.41	9.83	10.54	4.52	6.58
Merged-chr6-100144997-1	chr6	100144897	100145097	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	142361.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.46	3.02	6.28	2.82	6.55	2.2	3.99	9.5	3.54	4.52	3.01	5.33
Merged-chr1-69241845-1	chr1	69241745	69241945	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133786.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.81	3.02	1.71	1.21	1.64	0.0	2.99	1.07	1.38	1.0	1.51	0.0
Merged-chr2-167793887-1	chr2	167793787	167793987	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	102710.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	1.21	4.78	5.7	2.41	6.95	3.45	3.99	4.54	6.1	5.02	4.02	8.77
Merged-chr15-82345520-1	chr15	82345420	82345620	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	-526.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	4.04	1.51	8.56	2.41	8.18	7.53	2.99	2.16	1.57	5.02	0.0	1.57
Merged-chr5-49472768-2	chr5	49472672	49472872	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-187113.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.0	1.76	3.42	3.22	20.05	5.96	7.64	4.54	6.1	7.03	15.58	7.21
Merged-chr4-106875800-1	chr4	106875700	106875900	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35670.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.25	2.52	6.28	7.64	5.32	4.08	4.65	10.01	2.75	7.53	7.54	0.94
Merged-chr18-57583653-1	chr18	57583553	57583753	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-31256.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.85	3.02	6.28	5.23	3.27	2.51	4.32	3.48	12.39	4.02	9.04	2.19
Merged-chrX-162531142-1	chrX	162531042	162531242	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359103, intron 5 of 14)	(A)n|Simple_repeat|Simple_repeat	34374.0	NM_001359104	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	3.23	3.77	14.26	4.83	5.73	4.39	1.66	4.26	6.49	7.03	15.58	3.13
Merged-chr10-40358337-1	chr10	40358237	40358437	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	9029.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	2.42	0.75	2.85	0.8	1.23	0.94	6.64	3.95	2.36	1.51	7.03	2.51
Merged-chr4-41708526-1	chr4	41708426	41708626	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4991.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	3.23	2.77	3.99	4.83	1.64	6.59	2.99	4.09	4.72	6.53	10.05	2.82
Merged-chr12-72361078-1	chr12	72360978	72361178	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	47976.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	6.86	8.05	9.13	0.0	4.5	4.7	2.66	1.46	18.1	6.53	5.02	2.51
Merged-chr16-10565693-1	chr16	10565593	10565793	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177562, intron 3 of 22)	intron (NM_177562, intron 3 of 22)	20354.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.81	5.53	0.0	2.41	4.91	1.57	0.0	3.5	7.47	6.03	8.54	0.94
Merged-chr17-42840789-1	chr17	42840689	42840889	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009847, intron 3 of 17)	intron (NM_009847, intron 3 of 17)	35635.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.46	3.27	2.28	4.83	9.0	5.64	3.32	4.43	0.98	0.0	1.0	0.0
Merged-chr7-19404222-1	chr7	19404122	19404322	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286039)	promoter-TSS (NM_001286039)	-118.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	12.52	6.29	7.42	2.82	5.32	2.82	5.31	4.85	3.54	5.02	6.53	6.89
Merged-chr2-124670097-1	chr2	124669997	124670197	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16516.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.4	0.5	1.14	0.8	2.45	1.57	3.99	3.06	0.79	2.01	2.51	2.51
Merged-chr11-53776364-1	chr11	53776264	53776464	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001159396, exon 10 of 10)	exon (NM_001159396, exon 10 of 10)	5891.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	8.48	7.29	4.56	0.4	6.14	3.14	1.99	1.12	3.54	1.0	1.0	1.88
Merged-chr11-54127091-1	chr11	54126991	54127191	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011031, intron 13 of 15)	intron (NM_011031, intron 13 of 15)	26167.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	6.06	5.79	0.0	2.82	2.05	6.27	6.31	3.22	1.18	2.51	3.52	1.88
Merged-chr16-5195363-1	chr16	5195263	5195463	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013796)	TTS (NM_013796)	8649.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	2.83	2.52	3.42	2.01	2.86	6.59	3.99	4.74	2.16	7.03	1.0	2.82
Merged-chr1-152617140-1	chr1	152617040	152617240	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	8077.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.27	4.28	0.57	0.4	2.45	5.02	3.99	1.09	3.74	3.01	3.01	5.64
Merged-chr10-12017479-1	chr10	12017379	12017579	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	408255.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.4	3.52	2.28	4.42	1.64	5.96	2.33	5.83	0.0	2.51	3.01	1.88
Merged-chr4-43924902-1	chr4	43924802	43925002	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016678, intron 11 of 20)	intron (NM_016678, intron 11 of 20)	-32800.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	5.65	8.8	3.42	2.41	5.32	5.64	1.0	3.84	8.06	5.02	7.03	3.13
Merged-chr11-85186977-1	chr11	85186877	85187077	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	15881.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	5.65	4.53	3.42	5.23	6.95	5.02	3.65	5.05	8.85	3.01	2.51	6.89
Merged-chr11-106615779-1	chr11	106615679	106615879	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2849.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	7.67	3.77	5.7	8.85	5.32	2.51	3.65	4.6	2.56	2.01	3.52	10.02
Merged-chr6-29276706-1	chr6	29276606	29276806	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4080.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	1.62	2.77	4.56	1.61	8.18	6.59	0.33	0.95	2.56	3.01	0.0	3.13
Merged-chr7-19256729-1	chr7	19256629	19256829	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001282021)	TTS (NM_001282021)	15125.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.65	3.02	2.28	1.61	4.91	3.14	1.99	4.65	6.29	8.03	9.04	2.19
Merged-chr12-32637909-1	chr12	32637809	32638009	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182426.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	1.21	1.76	8.56	3.22	4.09	7.21	0.66	3.45	2.95	3.01	8.04	4.39
Merged-chr5-64751420-1	chr5	64751320	64751520	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52103.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.63	4.02	1.14	4.42	2.45	4.08	1.99	2.1	7.67	6.53	2.01	5.33
Merged-chr17-45737407-1	chr17	45737307	45737507	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	2901.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.65	4.02	3.42	5.23	9.82	1.25	6.98	2.64	3.15	3.51	3.01	2.82
Merged-chr9-58955742-1	chr9	58955642	58955842	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008684, intron 7 of 28)	B3|SINE|B2	80699.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	4.44	5.53	4.56	4.02	8.18	2.82	1.33	1.54	9.83	2.51	4.52	5.33
Merged-chr2-27753373-1	chr2	27753273	27753473	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 6 of 9)	intron (NM_001290481, intron 6 of 9)	42790.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.23	1.01	3.99	2.41	4.5	3.14	6.31	4.57	2.16	1.51	3.52	0.94
Merged-chr4-132035973-1	chr4	132035873	132036073	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	13105.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.85	4.53	9.13	6.03	12.27	5.02	4.32	3.25	4.33	12.05	6.53	7.52
Merged-chr9-104583431-1	chr9	104583331	104583531	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	13948.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.02	1.76	1.14	0.0	6.55	0.63	7.97	5.41	1.18	0.5	4.02	2.82
Merged-chr17-23664741-1	chr17	23664641	23664841	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153784, intron 2 of 9)	MIRb|SINE|MIR	4235.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	3.63	2.52	3.99	1.61	3.27	5.02	3.65	3.98	8.85	7.53	4.02	3.45
Merged-chr10-93167478-1	chr10	93167378	93167578	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	B4A|SINE|B4	4693.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	6.46	0.25	1.71	2.41	3.27	5.33	1.99	4.35	5.31	3.51	7.54	2.19
Merged-chr18-67715274-1	chr18	67715174	67715374	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008977, intron 1 of 9)	MTC|LTR|ERVL-MaLR	9347.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	6.06	13.58	6.85	4.83	6.95	6.27	5.65	5.97	4.72	1.51	9.04	9.71
Merged-chr13-68583828-1	chr13	68583728	68583928	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_138477, exon 2 of 7)	non-coding (NR_138477, exon 2 of 7)	1618.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	2.42	1.76	9.13	0.8	1.64	6.27	0.33	3.7	1.57	1.51	1.51	2.51
Merged-chr10-62338822-1	chr10	62338722	62338922	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	1599.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	2.42	1.51	3.42	2.41	2.45	5.02	1.33	3.62	1.97	7.03	3.01	4.39
Merged-chr6-129471181-1	chr6	129471081	129471281	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1598.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	2.02	2.52	8.56	0.8	1.23	5.33	2.99	4.71	6.69	6.53	10.55	8.46
Merged-chr2-94407359-1	chr2	94407259	94407459	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355691)	promoter-TSS (NM_001355691)	652.0	NR_027831	66457.0	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	1.62	2.26	5.7	0.0	2.45	3.45	5.65	4.18	2.16	3.51	4.52	2.19
Merged-chr2-73020026-1	chr2	73019926	73020126	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39580.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	1.62	0.5	3.42	0.8	3.27	5.02	1.33	8.36	5.9	3.51	1.51	4.7
Merged-chr10-37136579-1	chr10	37136479	37136679	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2347.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.23	7.04	6.28	0.0	4.09	6.9	7.64	4.71	7.67	10.54	4.02	7.52
Merged-chr2-145685071-1	chr2	145684971	145685171	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-16124.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.23	1.51	3.99	4.02	2.86	5.64	4.65	12.22	1.97	2.01	4.52	4.7
Merged-chr4-120949119-1	chr4	120949019	120949219	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005788, intron 2 of 5)	intron (NM_001005788, intron 2 of 5)	2582.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	3.63	6.54	2.85	4.02	7.36	5.33	1.99	4.12	3.54	3.01	3.01	2.19
Merged-chr7-18959620-2	chr7	18959512	18959712	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001029877, exon 4 of 4)	3' UTR (NM_001029877, exon 4 of 4)	-27912.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	3.23	7.55	2.85	2.01	5.32	2.51	1.33	4.32	6.1	8.54	12.06	7.21
Merged-chr4-53116501-1	chr4	53116401	53116601	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43394.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	12.11	4.28	3.42	4.83	10.23	2.2	5.98	6.64	5.11	3.51	7.54	3.45
Merged-chr7-81167299-2	chr7	81167196	81167396	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004184, intron 14 of 17)	B2_Mm2|SINE|B2	-46508.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.46	5.03	1.14	2.82	6.95	5.96	5.31	4.26	7.87	6.53	9.04	12.53
Merged-chr7-67549314-1	chr7	67549214	67549414	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	95922.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.81	2.01	3.42	3.62	4.5	5.96	1.99	1.85	3.34	7.03	1.51	2.82
Merged-chr9-56166315-1	chr9	56166215	56166415	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5245.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	1.01	0.0	0.0	14.73	8.78	3.99	3.45	6.49	13.05	4.52	0.63
Merged-chr15-99590811-1	chr15	99590711	99590911	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009701)	promoter-TSS (NM_009701)	-217.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	11.31	3.27	1.14	2.41	0.41	7.53	1.66	3.59	0.79	4.02	3.01	2.19
Merged-chr3-137610915-1	chr3	137610815	137611015	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-12757.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	2.83	4.02	6.85	5.23	8.59	0.31	4.98	4.51	7.47	1.0	8.04	1.88
Merged-chr17-28693778-1	chr17	28693678	28693878	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	1210.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.85	8.55	3.99	4.83	6.55	9.41	2.66	4.09	8.06	3.51	5.53	4.07
Merged-chr6-122608050-1	chr6	122607950	122608150	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	2037.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.81	1.01	0.0	3.22	8.59	5.96	1.33	1.82	3.34	7.53	4.02	6.89
Merged-chr6-87531154-1	chr6	87531054	87531254	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2105.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.46	1.76	1.14	0.0	1.64	5.33	3.65	2.07	8.26	4.02	5.02	7.52
Merged-chr10-37234430-1	chr10	37234330	37234530	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-95504.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.83	4.02	6.85	0.4	2.45	3.14	1.0	4.37	7.87	11.05	9.55	2.19
Merged-chr3-101291227-1	chr3	101291127	101291327	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3288.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.0	2.52	1.71	0.8	5.32	2.51	2.33	1.93	1.18	3.01	1.51	1.57
Merged-chr19-36390929-1	chr19	36390829	36391029	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029508, intron 1 of 8)	intron (NM_029508, intron 1 of 8)	11862.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	1.62	1.01	0.57	4.02	4.91	0.31	5.31	4.54	1.77	0.5	1.0	2.51
Merged-chr4-132304209-1	chr4	132304109	132304309	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-853.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.81	1.01	1.14	0.8	4.5	4.39	0.0	5.8	1.18	6.53	3.52	2.51
Merged-chr7-127207732-1	chr7	127207632	127207832	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144522, exon 1 of 9)	exon (NM_144522, exon 1 of 9)	736.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	4.04	6.04	3.99	3.22	6.14	2.2	4.98	4.74	6.88	5.02	3.52	5.95
Merged-chr11-94986446-1	chr11	94986346	94986546	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4766.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	2.83	1.51	2.28	2.41	3.27	5.02	2.99	2.66	1.18	7.53	6.03	3.76
Merged-chr1-172302549-1	chr1	172302449	172302649	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4485.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	2.83	9.06	1.14	1.61	4.09	6.27	1.0	3.95	6.69	3.51	6.53	3.45
Merged-chr13-58534691-1	chr13	58534591	58534791	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76186.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.85	4.53	6.85	4.83	12.27	6.9	8.64	3.76	7.08	5.52	3.01	1.88
Merged-chr7-139401138-1	chr7	139401038	139401238	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	644.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	4.04	5.03	6.28	0.8	0.82	4.39	3.65	6.5	5.7	4.52	4.02	3.13
Merged-chr11-43569432-1	chr11	43569332	43569532	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	32130.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	5.25	5.03	3.42	0.8	6.14	6.59	4.98	4.09	5.31	6.03	7.54	3.45
Merged-chr19-34198579-1	chr19	34198479	34198679	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	5645.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	2.42	4.02	2.85	1.61	2.86	3.76	2.99	3.62	7.87	2.51	8.54	5.33
Merged-chr3-130884122-1	chr3	130884022	130884222	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON15|Unknown|Unknown	-153724.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	2.02	2.26	0.57	2.41	3.68	1.57	1.33	5.72	4.33	3.01	3.01	2.51
Merged-chr11-114669929-1	chr11	114669829	114670029	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	1148.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	8.48	5.03	9.7	1.61	0.82	4.08	3.65	0.53	2.75	1.0	1.0	3.45
Merged-chr10-121515978-1	chr10	121515878	121516078	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39728.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.23	4.02	0.0	0.0	4.09	4.39	2.33	4.46	2.56	3.01	3.01	3.76
Merged-chrX-106045874-1	chrX	106045774	106045974	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	Lx6|LINE|L1	18650.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.4	0.75	1.14	0.0	0.82	1.88	2.66	3.42	1.18	1.0	3.01	2.51
Merged-chr14-105622347-1	chr14	105622247	105622447	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	1423.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	3.23	2.01	6.85	3.22	0.41	6.27	3.32	2.92	0.39	0.5	0.0	3.45
Merged-chr10-45122713-1	chr10	45122613	45122813	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011156, intron 9 of 14)	intron (NM_011156, intron 9 of 14)	55499.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.25	0.75	3.42	2.82	0.82	1.57	4.32	4.12	0.79	3.51	1.51	2.51
Merged-chr4-63206519-1	chr4	63206419	63206619	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8893.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	2.42	4.78	6.28	9.65	6.55	2.51	3.99	5.55	1.97	3.01	9.04	1.57
Merged-chr12-33301827-1	chr12	33301727	33301927	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-688.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.42	3.02	4.56	4.83	6.95	10.98	4.32	3.93	10.03	10.04	6.03	3.76
Merged-chr4-149549507-1	chr4	149549407	149549607	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	4390.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	4.85	6.04	3.42	8.04	7.77	3.45	2.99	5.21	3.54	1.0	8.04	3.13
Merged-chr10-20290596-1	chr10	20290496	20290696	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7092.0	NR_105840	102466647.0		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	5.65	6.79	2.85	4.02	6.55	1.88	4.32	4.21	5.11	1.0	7.54	6.27
Merged-chr3-103871906-1	chr3	103871806	103872006	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104070, intron 3 of 22)	(CAAA)n|Simple_repeat|Simple_repeat	11629.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	2.83	2.52	2.85	0.4	1.23	2.51	1.33	0.5	6.29	1.0	7.03	1.25
Merged-chr5-18006637-1	chr5	18006537	18006737	+	547.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44067.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.63	1.76	11.98	3.22	7.77	2.2	7.31	3.93	4.33	3.51	4.02	7.21
Merged-chr10-116580654-1	chr10	116580554	116580754	+	547.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001359248)	promoter-TSS (NM_001359248)	-118.0	NM_001359248	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	9.29	17.36	7.42	8.45	8.18	5.64	6.64	5.94	10.42	12.55	12.06	11.9
Merged-chr1-173939522-1	chr1	173939422	173939622	+	547.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	2970.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	0.0	0.0	0.0	0.8	0.0	0.63	0.66	2.64	6.49	3.01	8.04	8.46
Merged-chr12-84706701-1	chr12	84706601	84706801	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7894.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	6.06	1.76	0.0	2.01	6.55	4.08	3.32	3.95	7.28	3.01	7.54	3.13
Merged-chr1-85114905-1	chr1	85114805	85115005	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5052.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.63	3.77	0.0	5.63	7.77	8.15	3.65	4.79	3.15	1.51	3.52	1.25
Merged-chrX-142391760-1	chrX	142391660	142391860	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1225.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	4.44	8.05	7.99	7.64	7.36	2.51	5.31	3.98	9.05	7.53	3.01	4.07
Merged-chr1-72380991-1	chr1	72380891	72381091	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357519, intron 16 of 20)	C-rich|Low_complexity|Low_complexity	73570.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	2.02	7.04	1.71	4.83	6.55	4.39	8.64	6.03	0.59	0.0	0.0	0.0
Merged-chr9-104252659-1	chr9	104252559	104252759	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359740, intron 1 of 56)	Tigger7|DNA|TcMar-Tigger	10271.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.81	2.26	2.28	0.0	4.5	5.33	3.65	3.08	6.49	1.51	0.5	4.07
Merged-chr17-86438156-1	chr17	86438056	86438256	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-150978.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.81	1.76	0.0	2.41	1.64	6.27	3.99	4.54	1.57	1.0	4.02	1.57
Merged-chr5-21568057-1	chr5	21567957	21568157	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	24530.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.81	1.01	5.7	3.62	3.27	1.88	5.31	4.12	1.97	1.51	3.01	1.88
Merged-chr18-56675224-1	chr18	56675124	56675324	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32589.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.63	1.01	0.0	0.8	1.64	1.88	1.33	0.76	9.05	7.03	9.04	5.95
Merged-chr1-173743262-1	chr1	173743162	173743362	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-1453.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	4.85	6.79	1.14	4.02	2.05	1.88	1.33	1.6	5.11	7.53	9.55	8.46
Merged-chr2-15098580-1	chr2	15098480	15098680	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	43218.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	1.21	2.26	5.13	3.22	4.09	0.63	4.32	3.45	1.77	0.5	3.01	2.19
Merged-chr2-118900050-1	chr2	118899950	118900150	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1565.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	12.52	3.27	5.7	5.23	5.32	5.02	4.65	3.08	7.28	4.52	4.02	7.52
Merged-chr17-71021187-1	chr17	71021087	71021287	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083934, intron 1 of 36)	RSINE1|SINE|B4	1630.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	4.04	5.28	7.99	1.21	1.64	5.96	4.32	3.87	1.97	1.51	6.03	0.0
Merged-chr6-35122171-1	chr6	35122071	35122271	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001164413, intron 1 of 11)	intron (NM_001164413, intron 1 of 11)	11566.0	NM_001164412	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	8.48	6.54	10.27	2.41	0.0	1.57	1.33	1.04	10.42	2.01	2.01	5.01
Merged-chr15-58991334-1	chr15	58991234	58991434	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	57524.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.81	0.5	1.14	0.0	0.0	3.45	5.31	4.93	0.79	1.0	2.51	2.51
Merged-chr13-44601262-1	chr13	44601162	44601362	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129512.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.81	4.78	3.99	3.22	4.09	6.9	4.98	4.26	2.75	1.0	2.01	1.25
Merged-chr15-78843689-1	chr15	78843589	78843789	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027219, intron 1 of 2)	intron (NM_027219, intron 1 of 2)	1042.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	5.65	5.79	1.14	4.83	6.14	7.84	2.33	5.07	7.08	4.52	3.52	3.45
Merged-chr2-168250448-1	chr2	168250348	168250548	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18883.0	NM_001081134	241794.0	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275	potassium voltage-gated channel, subfamily G, member 1	protein-coding	6.86	2.01	9.13	5.63	5.32	2.51	1.66	5.66	4.92	6.53	13.57	6.27
Merged-chr8-75214449-1	chr8	75214349	75214549	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	505.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	1.62	6.79	5.7	0.8	4.91	5.64	7.31	4.79	0.98	0.0	2.01	2.51
Merged-chr4-3228848-1	chr4	3228748	3228948	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-43543.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	1.62	6.04	1.71	10.05	2.05	1.25	1.33	2.69	4.52	1.51	1.0	6.89
Merged-chr10-13884763-1	chr10	13884663	13884863	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	13483.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	0.0	2.52	3.42	4.83	4.5	4.39	1.66	5.19	4.33	12.05	6.03	7.21
Merged-chr6-28488523-1	chr6	28488423	28488623	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	(T)n|Simple_repeat|Simple_repeat	8175.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	3.63	5.53	4.56	2.82	7.36	9.41	0.66	3.08	8.46	10.54	2.51	3.45
Merged-chr11-69066167-1	chr11	69066067	69066267	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4642.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	2.42	2.77	4.56	0.0	2.86	4.7	2.33	2.1	7.08	4.02	1.51	9.08
Merged-chr6-67142381-1	chr6	67142281	67142481	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104974.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	1.21	3.02	3.99	8.85	1.64	9.72	2.99	5.02	4.52	0.5	1.0	2.51
Merged-chr3-14592322-1	chr3	14592222	14592422	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007892, intron 3 of 7)	Lx3A|LINE|L1	13651.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	2.42	0.75	1.14	2.41	3.27	3.45	4.32	8.05	5.11	2.01	1.0	1.88
Merged-chr4-139310012-1	chr4	139309912	139310112	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	696.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.02	0.75	0.57	0.8	1.23	5.64	0.0	1.68	1.38	0.0	3.52	0.63
Merged-chr8-78900190-1	chr8	78900090	78900290	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79038.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	1.21	2.52	0.0	4.42	0.82	0.0	1.99	2.44	3.93	3.51	6.53	1.25
Merged-chr7-35396380-1	chr7	35396280	35396480	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028120)	promoter-TSS (NM_028120)	387.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	4.04	1.76	2.85	3.22	10.23	5.96	11.96	4.88	7.87	6.53	6.03	3.76
Merged-chr12-112473994-1	chr12	112473894	112474094	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15454.0	NM_177039	319942.0	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	1.62	3.27	3.99	0.8	1.64	6.27	1.66	4.26	0.79	3.01	2.51	4.39
Merged-chr8-104393814-1	chr8	104393714	104393914	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	1993.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.65	0.5	2.85	1.61	2.86	0.63	1.99	4.35	2.56	2.01	3.01	1.57
Merged-chr18-47732901-1	chr18	47732801	47733001	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	56632.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	0.0	0.25	0.0	0.8	7.36	0.0	5.65	4.07	1.18	0.0	0.0	0.31
Merged-chr4-144907500-1	chr4	144907400	144907600	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	14363.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.81	1.01	1.14	2.41	2.05	1.57	3.32	4.74	1.57	4.02	2.51	1.88
Merged-chr8-3264364-1	chr8	3264264	3264464	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330056, intron 1 of 21)	Lx7|LINE|L1	15253.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.44	1.01	4.56	4.83	5.32	1.88	2.66	3.62	2.95	4.02	7.54	3.45
Merged-chr8-108984583-1	chr8	108984483	108984683	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	47723.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	3.23	2.26	2.28	4.02	7.36	2.82	3.99	6.79	4.13	1.0	6.53	4.07
Merged-chr13-37105151-1	chr13	37105051	37105251	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54907.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	1.21	1.51	1.14	1.61	5.32	3.45	2.66	6.87	0.39	5.52	6.03	1.57
Merged-chr5-110968835-2	chr5	110968731	110968931	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	MTC|LTR|ERVL-MaLR	-35313.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	5.65	5.28	6.28	3.62	5.73	3.14	3.99	4.82	6.69	3.01	12.06	2.19
Merged-chr1-125476374-1	chr1	125476274	125476474	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40647.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.4	2.01	0.0	0.4	7.36	0.94	2.66	4.6	3.93	2.51	5.53	2.82
Merged-chr9-46066859-1	chr9	46066759	46066959	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	54039.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	2.42	5.03	6.28	4.83	2.86	3.76	1.99	9.28	8.85	2.01	9.04	9.08
Merged-chr4-150099110-1	chr4	150099010	150099210	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177366, intron 2 of 3)	intron (NM_177366, intron 2 of 3)	11607.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	5.65	5.79	5.7	1.61	4.09	4.39	6.98	7.18	14.16	8.54	3.52	5.33
Merged-chr14-55011982-1	chr14	55011882	55012082	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-3472.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	6.06	3.02	9.7	3.62	6.95	9.41	1.66	3.81	0.98	0.0	0.0	0.0
Merged-chr5-99233367-1	chr5	99233267	99233467	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19560.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.65	3.52	1.14	4.02	3.68	7.21	7.31	4.35	5.7	4.52	4.02	2.19
Merged-chr11-54064659-1	chr11	54064559	54064759	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	4358.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	6.86	3.27	3.99	8.04	3.68	2.2	3.32	5.38	1.97	1.51	4.02	1.57
Merged-chr2-71882714-1	chr2	71882614	71882814	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360002, intron 3 of 10)	T-rich|Low_complexity|Low_complexity	7810.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.0	0.0	0.0	1.61	1.64	0.0	0.0	0.0	7.87	8.54	7.54	8.14
Merged-chr9-104270158-1	chr9	104270058	104270258	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7228.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	2.52	1.71	0.0	2.45	5.33	0.33	3.03	4.52	6.03	1.51	2.19
Merged-chr6-43462010-1	chr6	43461910	43462110	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	L1MA5|LINE|L1	19581.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	5.25	6.04	12.55	9.25	4.09	10.66	8.64	6.7	8.65	7.53	10.05	2.82
Merged-chr10-115248117-1	chr10	115248017	115248217	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025706, intron 1 of 16)	MTD|LTR|ERVL-MaLR	3376.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.4	12.07	5.7	2.01	2.86	3.45	3.65	3.73	0.79	2.51	3.52	1.88
Merged-chr7-100215495-1	chr7	100215395	100215595	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12112.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	7.27	2.01	3.42	1.21	7.36	10.66	2.66	5.38	10.82	9.04	3.01	2.82
Merged-chr4-141553737-1	chr4	141553637	141553837	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	7575.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	2.83	2.52	2.28	0.8	7.36	3.14	1.33	5.16	6.29	5.02	10.05	1.88
Merged-chr16-21651964-1	chr16	21651864	21652064	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	42701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.81	3.27	0.0	0.0	1.23	5.64	3.32	5.05	2.56	4.02	1.51	3.13
Merged-chr12-41149220-1	chr12	41149120	41149320	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	125130.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	1.51	1.14	2.41	2.86	2.2	5.98	5.58	1.77	0.0	0.5	1.25
Merged-chr11-34051643-1	chr11	34051543	34051743	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010696, intron 2 of 20)	L3|LINE|CR1	4715.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.23	5.03	4.56	0.8	9.41	7.53	6.31	0.59	4.52	0.5	1.51	1.88
Merged-chr9-89973902-1	chr9	89973802	89974002	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	64127.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	5.25	3.77	0.57	2.41	5.32	3.76	0.0	5.1	6.1	9.54	9.04	3.76
Merged-chr14-20257141-1	chr14	20257041	20257241	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12021.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0.81	2.26	0.0	0.8	0.0	5.64	1.66	4.51	3.54	2.51	2.01	1.88
Merged-chr13-108316960-1	chr13	108316860	108317060	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178683, intron 1 of 10)	intron (NM_178683, intron 1 of 10)	623.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	6.46	2.77	1.14	4.42	1.64	2.82	4.32	4.74	4.13	3.51	6.03	5.64
Merged-chr2-84633343-1	chr2	84633243	84633443	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	16137.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.81	5.03	3.99	0.8	4.09	5.02	1.66	4.71	6.88	2.51	7.03	3.13
Merged-chr17-27702592-1	chr17	27702492	27702692	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286743, intron 2 of 9)	CpG	17353.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	5.65	2.01	3.42	3.22	2.45	3.76	2.66	1.85	9.44	4.52	6.03	1.57
Merged-chr15-83157498-1	chr15	83157398	83157598	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	7853.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	2.83	5.79	2.28	6.44	5.73	4.39	0.0	3.93	5.7	8.54	2.01	1.25
Merged-chr17-23742652-1	chr17	23742552	23742752	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028416, exon 7 of 10)	exon (NM_028416, exon 7 of 10)	-2322.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.81	2.01	1.71	0.8	3.68	0.63	3.32	1.26	7.67	6.53	7.54	3.45
Merged-chr10-4433575-1	chr10	4433475	4433675	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024261, intron 1 of 4)	intron (NM_024261, intron 1 of 4)	970.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	4.04	5.79	4.56	3.22	6.14	4.7	3.99	3.48	10.62	2.01	4.52	1.88
Merged-chr15-86283323-1	chr15	86283223	86283423	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	5648.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.4	1.01	1.14	0.0	0.82	4.7	0.66	3.03	1.57	1.51	3.01	3.45
Merged-chr18-4236417-1	chr18	4236317	4236517	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70585.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.46	6.29	11.41	5.63	7.36	9.09	2.66	4.01	6.69	10.54	11.05	4.07
Merged-chr5-140827629-1	chr5	140827529	140827729	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2802.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	6.46	2.01	3.42	4.02	8.18	4.7	1.99	4.51	1.57	2.01	8.54	2.19
Merged-chr18-77797748-1	chr18	77797648	77797848	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-1358.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	3.23	6.04	11.41	9.25	3.68	3.45	7.64	8.33	4.52	3.51	10.55	4.07
Merged-chr9-21840383-1	chr9	21840283	21840483	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177030, intron 9 of 49)	intron (NM_177030, intron 9 of 49)	4873.0	NM_001080940	624219.0	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.81	7.8	10.27	4.02	3.27	2.51	3.32	3.81	2.16	3.01	1.51	3.76
Merged-chr6-38806524-1	chr6	38806424	38806624	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	30787.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	2.83	2.52	2.85	2.82	2.05	4.39	1.33	4.79	2.36	1.0	2.51	1.57
Merged-chr11-46449959-1	chr11	46449859	46450059	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4972.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	1.21	2.26	3.42	4.42	3.27	7.53	1.0	3.11	3.54	4.52	1.51	5.64
Merged-chr13-35074294-1	chr13	35074194	35074394	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-80150.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	4.85	7.04	6.28	8.04	6.95	4.39	2.66	3.45	2.95	8.54	5.53	3.13
Merged-chr4-132113579-1	chr4	132113479	132113679	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013622, exon 3 of 3)	exon (NM_013622, exon 3 of 3)	30907.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	4.85	3.77	10.27	2.41	7.36	5.64	0.0	8.05	7.87	4.52	11.56	5.64
Merged-chr17-45586573-3	chr17	45586457	45586657	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199113, intron 12 of 13)	B3A|SINE|B2	5836.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	8.88	5.79	1.14	4.02	7.36	13.48	1.33	3.14	4.33	7.03	10.05	9.4
Merged-chr19-58918798-1	chr19	58918698	58918898	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	-7039.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0.4	2.01	0.0	1.21	6.55	2.2	2.66	6.39	5.9	8.54	11.05	9.08
Merged-chr16-55954320-1	chr16	55954220	55954420	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11955.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	4.44	4.53	5.7	1.61	3.27	5.02	5.98	2.44	8.06	5.52	2.51	4.39
Merged-chr10-60351942-1	chr10	60351842	60352042	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	5091.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.06	3.02	2.85	5.63	6.55	2.51	1.33	6.03	5.51	3.01	5.02	2.19
Merged-chr12-41194890-1	chr12	41194790	41194990	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170800.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	4.04	3.02	2.28	8.04	1.64	2.82	3.99	6.95	2.75	1.51	10.05	2.19
Merged-chr8-22566352-1	chr8	22566252	22566452	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011394, intron 10 of 10)	intron (NM_011394, intron 10 of 10)	27461.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	3.23	2.01	3.42	4.83	4.91	5.64	1.0	4.54	2.36	5.02	2.51	2.51
Merged-chr14-55745056-1	chr14	55744956	55745156	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	628.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	1.21	2.26	1.14	2.41	2.05	2.51	0.66	2.55	7.08	4.52	8.54	1.25
Merged-chr11-54626686-1	chr11	54626586	54626786	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175258, exon 11 of 28)	exon (NM_175258, exon 11 of 28)	30540.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	8.88	4.78	2.28	5.63	3.27	6.59	1.99	4.54	6.49	7.53	1.51	1.25
Merged-chr6-87533827-1	chr6	87533727	87533927	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	-568.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.04	2.26	0.0	1.61	5.32	2.51	5.65	4.68	2.36	2.51	4.02	5.64
Merged-chr6-53721805-1	chr6	53721705	53721905	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99020.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	2.83	1.76	1.14	4.02	1.64	6.27	3.99	4.01	5.51	5.52	6.03	4.07
Merged-chr12-106055991-1	chr12	106055891	106056091	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029843, intron 6 of 13)	intron (NM_001029843, intron 6 of 13)	45728.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.23	2.26	1.14	3.62	4.5	4.7	2.33	2.47	3.93	7.03	13.06	3.13
Merged-chr14-70963719-1	chr14	70963619	70963819	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	73612.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.0	2.26	4.56	5.63	2.05	3.45	2.66	6.84	8.26	14.56	8.54	3.76
Merged-chr13-64190550-1	chr13	64190450	64190650	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28684.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.0	2.01	0.0	2.41	2.45	6.27	1.99	5.33	6.1	2.01	3.01	2.82
Merged-chr7-99917861-1	chr7	99917761	99917961	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001164258)	TTS (NM_001164258)	58643.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	8.08	6.04	3.42	3.22	6.55	5.02	5.98	4.01	3.15	5.02	7.54	3.13
Merged-chr2-165983600-1	chr2	165983500	165983700	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9037.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.06	2.77	3.42	2.82	4.91	6.27	4.32	11.02	7.28	8.54	9.04	4.07
Merged-chr14-30322511-1	chr14	30322411	30322611	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	30975.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	5.65	6.79	3.42	8.85	4.91	7.21	4.98	7.96	8.65	5.52	8.04	3.45
Merged-chr2-181213162-1	chr2	181213062	181213262	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011481)	promoter-TSS (NM_011481)	9.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	3.63	1.76	5.7	0.8	6.55	3.45	4.98	3.93	5.11	1.51	6.53	1.88
Merged-chr11-53463700-1	chr11	53463600	53463800	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290789, exon 2 of 7)	exon (NM_001290789, exon 2 of 7)	6495.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	7.27	5.79	2.85	5.63	5.32	3.14	8.3	5.61	5.11	8.54	4.02	3.45
Merged-chr6-49057941-1	chr6	49057841	49058041	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_053110, exon 11 of 11)	3' UTR (NM_053110, exon 11 of 11)	-15854.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	4.85	3.52	0.0	8.45	7.36	2.2	0.66	5.02	5.31	0.5	5.02	2.19
Merged-chr19-47050683-1	chr19	47050583	47050783	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	223.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	4.85	5.28	2.28	1.61	7.36	3.14	2.99	3.0	4.92	9.54	2.51	4.7
Merged-chr15-53474797-1	chr15	53474697	53474897	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128614.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.42	0.5	0.57	2.01	2.86	3.76	5.31	3.42	1.57	2.01	1.0	1.57
Merged-chr8-80029629-1	chr8	80029529	80029729	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	28379.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	2.02	5.53	12.55	10.46	4.5	2.2	3.99	2.13	3.74	3.01	3.01	3.76
Merged-chr2-92250642-1	chr2	92250542	92250742	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	29080.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	6.06	1.51	5.13	2.01	6.55	1.88	2.33	11.8	8.06	7.03	4.52	10.65
Merged-chr1-171767096-1	chr1	171766996	171767196	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013730)	promoter-TSS (NM_013730)	-36.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	3.63	7.8	4.56	4.02	5.73	3.76	3.32	4.04	6.88	4.52	7.03	5.64
Merged-chr11-106317556-1	chr11	106317456	106317656	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2994.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	2.42	4.78	0.0	0.8	5.73	2.2	3.99	4.15	0.98	2.01	0.5	6.27
Merged-chr2-51268741-1	chr2	51268641	51268841	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	26910.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	10.5	7.29	4.56	11.26	2.05	2.82	4.65	10.88	5.11	6.53	13.57	4.39
Merged-chr17-32162307-1	chr17	32162207	32162407	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008716, intron 2 of 32)	CpG	4545.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	8.08	5.03	6.28	0.8	1.64	2.51	4.32	3.7	2.16	1.0	7.54	5.64
Merged-chr3-152152091-1	chr3	152151991	152152191	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	13809.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	11.31	4.53	8.56	6.03	4.91	3.76	4.65	4.71	6.49	6.53	4.52	2.51
Merged-chr4-132636693-1	chr4	132636593	132636793	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-2353.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.63	2.01	1.14	1.61	8.18	7.53	1.33	2.72	3.93	5.52	2.01	5.95
Merged-chr9-50885417-1	chr9	50885317	50885517	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286553, intron 15 of 16)	intron (NM_001286553, intron 15 of 16)	28493.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.23	5.03	4.56	11.66	3.68	5.64	4.65	3.59	0.79	1.51	2.01	2.19
Merged-chr12-98261372-1	chr12	98261272	98261472	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1913.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	9.69	0.5	6.28	2.41	8.59	6.27	7.64	5.05	4.92	4.52	5.02	1.88
Merged-chrX-73439857-1	chrX	73439757	73439957	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028633, intron 9 of 9)	intron (NM_028633, intron 9 of 9)	-4514.0	NM_011907	24102.0	Mm.23312	NM_011907	ENSMUSG00000031372	Trex2	-	three prime repair exonuclease 2	protein-coding	4.04	6.54	9.13	7.24	1.64	5.33	0.0	2.5	9.05	1.0	5.02	5.01
Merged-chr6-29929709-1	chr6	29929609	29929809	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037740, intron 8 of 20)	Lx9|LINE|L1	12696.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	2.42	4.02	7.99	2.01	6.55	5.64	0.0	4.09	6.29	2.01	8.04	4.7
Merged-chr4-81743196-1	chr4	81743096	81743296	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-256183.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.4	2.01	1.71	5.23	6.55	2.82	1.0	2.44	5.9	7.53	9.55	0.63
Merged-chr17-32074690-1	chr17	32074590	32074790	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	16733.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	7.27	6.29	20.54	4.83	0.0	1.25	0.0	1.26	3.74	2.01	0.5	0.0
Merged-chr6-123185066-2	chr6	123184983	123185183	+	546.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004159, intron 3 of 5)	Lx8|LINE|L1	12060.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	4.44	3.52	2.28	1.61	4.09	6.27	7.64	3.73	7.28	3.01	10.55	2.19
Merged-chr1-180192018-2	chr1	180191927	180192127	+	546.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	1458.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	7.27	4.28	4.56	4.42	3.68	0.63	3.32	5.05	9.24	2.01	1.51	6.58
Merged-chr2-75636925-1	chr2	75636825	75637025	+	546.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22334.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.81	1.01	1.14	0.0	1.64	0.63	0.0	0.5	3.15	1.51	7.03	3.76
Merged-chr15-103488489-1	chr15	103488389	103488589	+	546.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 26 of 30)	intron (NM_153505, intron 26 of 30)	-14545.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	4.85	3.27	7.42	6.44	9.41	5.33	1.99	4.57	2.75	5.52	7.54	4.39
Merged-chr1-136136250-1	chr1	136136150	136136350	+	546.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	URR1B|DNA|hAT-Charlie	4860.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	1.62	5.28	2.28	2.01	4.09	3.14	3.32	7.43	11.6	8.54	8.54	5.33
Merged-chrX-167204564-2	chrX	167204471	167204671	+	546.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4647.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	4.85	5.28	0.57	1.61	4.5	7.84	2.33	4.12	7.87	7.03	4.02	3.13
Merged-chr1-153480595-3	chr1	153480494	153480694	+	546.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007842, intron 4 of 27)	B3|SINE|B2	7066.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	8.08	5.28	2.28	2.82	7.36	1.88	2.33	5.38	9.64	8.03	11.05	3.76
Merged-chr2-11662302-1	chr2	11662202	11662402	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	19510.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	3.23	4.02	3.99	6.44	0.82	4.08	0.0	4.65	5.11	3.01	7.54	2.19
Merged-chr1-161376935-1	chr1	161376835	161377035	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18503.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	6.86	9.56	4.56	2.41	6.95	3.14	9.3	0.81	4.72	3.51	0.0	4.07
Merged-chr14-84442716-1	chr14	84442616	84442816	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-847.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	2.02	4.53	1.14	1.61	5.73	4.39	7.97	3.81	3.93	3.01	1.51	0.31
Merged-chr19-36915855-1	chr19	36915755	36915955	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3744.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	7.67	2.26	3.42	2.82	2.05	2.82	2.99	2.83	7.08	1.0	5.02	6.89
Merged-chr2-6706381-2	chr2	6706286	6706486	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	15276.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	1.21	3.77	3.42	1.61	5.73	1.25	3.32	5.1	9.05	1.51	5.53	5.95
Merged-chr2-35111171-1	chr2	35111071	35111271	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1679.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.04	5.28	9.13	2.01	5.73	4.7	3.32	5.33	5.7	8.54	2.51	5.01
Merged-chr5-41281166-1	chr5	41281066	41281266	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	426525.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.81	2.01	2.28	4.42	2.86	0.94	0.33	2.75	7.08	9.54	17.08	7.83
Merged-chrX-60356784-1	chrX	60356684	60356884	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	37708.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	1.62	4.02	3.42	6.44	4.09	2.82	4.65	6.45	9.44	6.03	2.01	3.13
Merged-chr17-27622580-1	chr17	27622480	27622680	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	384.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	4.44	6.04	5.7	2.41	4.91	10.35	4.65	4.18	6.1	8.03	15.58	4.7
Merged-chr12-73341096-1	chr12	73340996	73341196	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 8 of 15)	intron (NM_001037717, intron 8 of 15)	54248.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.23	1.01	2.85	2.82	0.82	1.57	7.31	3.48	3.93	3.01	0.0	0.94
Merged-chr19-36555213-1	chr19	36555113	36555313	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163471, intron 1 of 20)	intron (NM_001163471, intron 1 of 20)	574.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	1.21	1.01	1.14	1.61	5.32	1.25	2.66	4.77	2.36	0.5	0.5	0.63
Merged-chr17-15529080-1	chr17	15528980	15529180	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1779.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	6.06	3.02	1.14	6.84	6.14	4.39	4.32	4.54	5.9	5.02	5.02	2.51
Merged-chr10-80358298-1	chr10	80358198	80358398	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001347124, exon 3 of 15)	exon (NM_001347124, exon 3 of 15)	1839.0	NM_001347124	216166.0	Mm.17613	NM_183152	ENSMUSG00000035486	Plk5	6330514A18Rik	polo like kinase 5	protein-coding	4.85	5.28	7.99	1.61	10.23	6.59	1.0	2.36	4.92	3.01	2.01	3.76
Merged-chr6-8021742-1	chr6	8021642	8021842	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 30 of 34)	intron (NM_001037865, intron 30 of 34)	170875.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	6.46	7.55	12.55	8.04	0.0	1.57	0.0	0.62	0.0	0.0	0.0	0.63
Merged-chr3-142263884-1	chr3	142263784	142263984	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 8 of 12)	MTB_Mm|LTR|ERVL-MaLR	-94459.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.81	3.52	4.56	0.4	0.0	0.0	6.31	0.9	4.92	9.54	13.06	6.89
Merged-chr8-86830359-1	chr8	86830259	86830459	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	54899.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	7.67	5.03	4.56	4.83	9.82	4.39	1.99	5.13	0.98	10.04	7.03	5.33
Merged-chr2-71318733-1	chr2	71318633	71318833	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172436, intron 5 of 17)	A-rich|Low_complexity|Low_complexity	48821.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	10.9	6.04	10.27	1.21	11.05	1.88	5.65	2.72	5.51	2.01	4.02	5.01
Merged-chr5-35215729-1	chr5	35215629	35215829	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62837.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	4.04	3.02	5.7	3.62	5.73	9.09	2.66	2.78	8.85	8.03	11.56	8.46
Merged-chr15-57926576-1	chr15	57926476	57926676	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	14377.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	1.62	3.77	0.57	2.41	2.45	5.02	2.99	3.2	8.46	4.52	7.54	2.82
Merged-chrX-167205378-1	chrX	167205278	167205478	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3840.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	3.23	8.3	1.14	4.83	0.82	8.47	1.66	3.73	3.74	5.52	5.53	6.27
Merged-chr4-53862109-1	chr4	53862009	53862209	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028053)	TTS (NM_028053)	36064.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	2.42	1.26	0.0	0.0	2.45	1.57	4.32	5.05	0.79	2.01	3.01	1.88
Merged-chr7-141193720-1	chr7	141193620	141193820	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001172064)	promoter-TSS (NM_001172064)	284.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	8.48	5.79	13.12	7.64	6.95	12.54	5.98	7.35	6.1	6.03	11.05	5.01
Merged-chr12-52010708-1	chr12	52010608	52010808	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-4201.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	2.02	2.52	1.14	2.82	1.64	4.7	3.65	4.23	4.52	8.03	1.0	1.57
Merged-chr16-18348812-1	chr16	18348712	18348912	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359108)	promoter-TSS (NM_001359108)	630.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	5.25	3.02	2.28	4.83	3.68	6.59	2.33	4.71	1.38	3.01	3.01	2.51
Merged-chr18-75214717-1	chr18	75214617	75214817	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	82600.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.23	0.75	3.99	2.41	2.45	1.88	5.31	4.63	1.18	0.5	1.0	1.25
Merged-chr7-30594276-1	chr7	30594176	30594376	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1334.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	3.63	2.01	6.85	3.62	1.23	12.54	6.31	3.79	6.1	5.02	4.02	1.88
Merged-chr2-92007633-1	chr2	92007533	92007733	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16537.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	1.62	2.77	0.0	1.61	2.45	4.7	2.66	4.54	2.36	1.0	2.51	0.94
Merged-chr6-82916059-1	chr6	82915959	82916159	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308374, intron 11 of 12)	B3|SINE|B2	23710.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	6.46	4.78	6.85	2.01	3.27	8.15	1.99	4.18	7.67	10.54	9.04	6.89
Merged-chr11-63924284-1	chr11	63924184	63924384	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2000.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	5.25	2.01	1.71	8.45	3.68	1.88	2.66	1.93	7.87	2.51	11.05	2.51
Merged-chr1-127982170-1	chr1	127982070	127982270	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	B4A|SINE|B4	113397.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	2.83	3.52	2.28	0.8	2.86	3.14	4.98	5.07	3.34	1.51	2.51	2.51
Merged-chr13-37295509-1	chr13	37295409	37295609	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49836.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.62	0.0	1.71	1.61	2.45	5.96	2.99	2.86	0.2	3.01	0.0	0.31
Merged-chr5-43276636-1	chr5	43276536	43276736	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177379, intron 5 of 10)	intron (NM_001177379, intron 5 of 10)	-41282.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	1.21	2.01	0.57	4.02	0.0	5.02	1.0	5.66	7.28	3.01	9.04	4.07
Merged-chr1-162624111-1	chr1	162624011	162624211	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15039.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	0.0	2.77	0.0	0.8	6.55	3.76	5.98	3.28	2.16	5.52	1.0	1.88
Merged-chr8-57427369-1	chr8	57427269	57427469	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-28554.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	1.62	5.03	3.99	3.22	6.14	3.45	4.98	4.12	1.18	1.0	1.0	0.0
Merged-chr2-6309613-1	chr2	6309513	6309713	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 4 of 6)	MLT1I|LTR|ERVL-MaLR	-13144.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.86	4.78	3.42	4.02	3.68	4.39	3.65	5.72	13.57	0.5	4.02	3.76
Merged-chr1-88272947-1	chr1	88272847	88273047	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	-3539.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.4	1.01	0.0	3.22	5.73	5.33	4.65	4.23	5.7	5.52	3.01	4.7
Merged-chr9-53818939-1	chr9	53818839	53819039	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028060)	TTS (NM_028060)	-31312.0	NM_025540	66402.0	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	4.04	4.53	2.28	0.0	1.23	5.02	1.0	3.93	8.46	1.51	5.02	5.33
Merged-chr5-32159889-1	chr5	32159789	32159989	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23417.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.23	0.75	2.28	0.0	4.5	0.31	5.31	1.35	3.54	3.01	1.51	2.51
Merged-chr4-148681669-1	chr4	148681569	148681769	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38352.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.42	3.52	4.56	2.41	1.64	6.59	2.33	2.13	10.03	3.51	9.55	1.57
Merged-chr2-160653149-1	chr2	160653049	160653249	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	7252.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.63	4.78	3.42	0.0	9.0	10.98	1.33	2.21	6.1	3.01	3.01	1.57
Merged-chr4-3800131-1	chr4	3800031	3800231	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	35524.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.08	7.29	3.99	0.8	0.82	3.76	1.99	2.27	2.56	1.0	1.51	0.94
Merged-chr15-99396902-1	chr15	99396802	99397002	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	3683.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.81	2.52	2.28	0.4	4.5	6.59	2.66	2.61	1.97	2.01	2.01	0.94
Merged-chr10-93182037-1	chr10	93181937	93182137	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	19252.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	3.23	6.04	4.56	8.85	1.64	4.08	5.31	9.03	0.39	0.5	1.51	0.0
Merged-chr11-75159740-1	chr11	75159640	75159840	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 17 of 18)	intron (NM_001002764, intron 17 of 18)	8412.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.42	1.76	7.42	1.21	0.82	2.82	1.33	0.81	7.08	6.03	5.02	5.64
Merged-chrX-101419184-1	chrX	101419084	101419284	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177987, intron 1 of 6)	intron (NM_001177987, intron 1 of 6)	730.0	NM_001177986	56364.0	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	6.06	4.53	7.99	3.62	4.91	2.2	3.99	3.73	4.33	7.53	6.53	5.64
Merged-chr7-49135251-1	chr7	49135151	49135351	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	26907.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	3.23	1.01	5.7	1.61	1.23	9.09	3.99	5.07	7.08	5.02	8.54	1.57
Merged-chr7-125472585-1	chr7	125472485	125472685	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	18957.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	5.25	7.29	3.42	4.83	4.5	3.14	3.99	4.6	8.85	1.51	6.03	2.19
Merged-chr12-17796105-1	chr12	17796005	17796205	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105296.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.85	2.52	1.71	0.8	2.05	3.45	1.33	3.28	5.31	11.55	2.01	5.95
Merged-chr9-106160923-1	chr9	106160823	106161023	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2785.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	2.83	6.29	3.99	5.63	6.55	5.02	2.99	5.05	7.67	1.0	2.01	3.45
Merged-chr9-47439135-1	chr9	47439035	47439235	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-91035.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.63	0.25	0.57	0.8	1.64	4.39	4.32	3.42	0.59	1.51	0.5	0.94
Merged-chr16-15889683-1	chr16	15889583	15889783	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007679)	TTS (NM_007679)	2397.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.67	2.52	11.41	3.22	6.95	2.2	6.31	3.2	9.44	8.54	10.05	3.45
Merged-chr2-10374083-1	chr2	10373983	10374183	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177386, intron 1 of 22)	CpG	1647.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	5.25	5.53	5.7	4.42	6.95	2.51	5.31	3.98	3.34	3.01	3.52	6.89
Merged-chr2-173081053-1	chr2	173080953	173081153	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	38472.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	1.62	1.01	1.14	2.41	2.86	4.08	1.33	5.16	2.75	14.56	0.5	0.63
Merged-chr6-6580650-1	chr6	6580550	6580750	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1992.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	6.46	5.79	6.85	5.63	6.14	4.39	6.98	5.78	0.0	0.5	0.0	2.19
Merged-chr11-55459927-1	chr11	55459827	55460027	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1281.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.65	3.52	5.7	0.8	4.09	2.51	0.66	3.34	4.72	18.08	5.02	5.33
Merged-chr9-44569789-2	chr9	44569675	44569875	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35117.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	3.23	4.78	5.7	4.83	3.27	4.7	1.0	3.39	7.47	9.04	14.57	5.33
Merged-chr2-121124905-1	chr2	121124805	121125005	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15114.0	NM_001160424	640543.0	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	0.81	2.26	1.14	0.0	3.68	1.88	5.31	3.87	0.0	1.0	1.51	1.25
Merged-chr2-52979720-1	chr2	52979620	52979820	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	ORR1D2|LTR|ERVL-MaLR	121852.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	2.52	2.28	2.41	9.0	3.14	1.33	4.23	1.57	4.02	2.51	0.94
Merged-chr14-27229615-1	chr14	27229515	27229715	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-8395.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.81	0.5	2.28	2.82	4.09	3.76	1.99	3.79	1.57	0.5	3.52	2.82
Merged-chrX-109123002-1	chrX	109122902	109123102	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	27595.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.81	3.27	0.0	1.61	3.68	9.72	6.98	3.36	5.7	9.04	5.02	5.64
Merged-chr8-11271009-1	chr8	11270909	11271109	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-41796.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.81	0.0	0.0	0.8	3.68	3.14	5.31	3.76	0.39	1.51	6.03	0.0
Merged-chr5-123280462-1	chr5	123280362	123280562	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52272.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.4	3.27	7.99	6.03	9.0	5.96	3.65	3.42	2.56	0.0	1.0	0.63
Merged-chr3-109354117-1	chr3	109354017	109354217	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	13434.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.4	1.01	1.71	2.41	3.27	3.14	4.65	7.12	0.39	0.0	0.0	0.94
Merged-chr9-31151272-1	chr9	31151172	31151372	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 17 of 17)	intron (NM_001357698, intron 17 of 17)	-19473.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	6.86	6.04	3.99	0.8	6.95	3.45	1.99	4.35	5.11	6.53	6.03	4.39
Merged-chr17-83512976-1	chr17	83512876	83513076	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	1357.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	2.83	1.76	3.42	1.61	5.73	0.31	3.32	0.14	0.79	0.0	0.0	2.82
Merged-chr6-116345331-1	chr6	116345231	116345431	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302385, intron 2 of 6)	intron (NM_001302385, intron 2 of 6)	7309.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	5.25	4.78	11.98	14.88	2.45	4.08	5.98	7.43	5.31	8.03	6.53	4.39
Merged-chr14-54230831-2	chr14	54230731	54230931	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23098.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.62	6.04	2.28	6.03	8.59	6.9	4.32	2.52	7.28	1.51	4.02	6.27
Merged-chr13-37964240-1	chr13	37964140	37964340	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29968.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.42	1.76	0.57	0.8	2.86	5.02	3.99	4.09	2.36	7.53	8.04	7.52
Merged-chr1-133087841-1	chr1	133087741	133087941	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099276, intron 15 of 32)	intron (NM_001099276, intron 15 of 32)	41829.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	2.42	2.77	2.28	5.63	2.86	4.39	1.66	1.15	8.26	12.55	9.04	6.58
Merged-chr3-88144185-1	chr3	88144085	88144285	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	1813.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	1.62	8.05	7.99	2.82	6.95	1.57	2.33	3.45	2.56	5.02	9.04	6.27
Merged-chr7-110646080-1	chr7	110645980	110646180	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	18423.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	10.09	4.28	10.27	2.82	0.82	2.82	3.99	2.19	6.29	8.54	6.03	2.82
Merged-chr5-25221849-1	chr5	25221749	25221949	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1023.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.81	2.52	2.28	0.0	4.91	0.94	1.99	2.97	3.15	5.02	9.55	8.14
Merged-chr4-154943907-1	chr4	154943807	154944007	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15830.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	8.08	6.79	2.28	2.82	4.91	20.07	4.98	5.44	15.14	11.05	9.55	4.7
Merged-chr10-94960995-1	chr10	94960895	94961095	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-16417.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.65	3.77	3.42	3.22	2.05	8.15	4.98	3.9	8.65	10.04	1.0	2.82
Merged-chr1-51518842-1	chr1	51518742	51518942	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-40443.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	1.21	3.27	5.7	2.41	5.73	3.45	3.32	4.91	3.15	4.52	6.03	1.57
Merged-chr19-6283249-1	chr19	6283149	6283349	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	6353.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	2.83	4.78	1.14	0.0	7.77	6.59	0.0	0.64	4.52	4.52	3.52	0.94
Merged-chrX-52791182-1	chrX	52791082	52791282	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001034059)	promoter-TSS (NM_001034059)	-18.0	NM_001034059	434778.0	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	1.21	0.5	4.56	0.0	2.45	0.31	6.64	4.65	0.98	0.0	4.52	2.19
Merged-chr3-135628942-1	chr3	135628842	135629042	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62605.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.04	3.52	6.85	1.61	4.91	6.9	6.98	4.85	5.11	14.56	6.53	3.13
Merged-chr6-97360187-1	chr6	97360087	97360287	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	99099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.42	2.01	3.42	2.41	2.86	3.14	4.65	6.64	3.93	5.52	2.51	7.83
Merged-chr13-70618953-1	chr13	70618853	70619053	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144837, intron 6 of 18)	intron (NM_144837, intron 6 of 18)	18681.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	3.63	4.53	7.99	0.8	5.73	4.7	1.0	4.12	2.16	8.54	9.04	1.57
Merged-chr4-63151843-1	chr4	63151743	63151943	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007443, intron 2 of 9)	intron (NM_007443, intron 2 of 9)	2329.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	1.62	2.77	2.28	0.8	8.59	6.9	4.32	2.66	0.2	4.02	1.0	2.19
Merged-chr9-18277635-1	chr9	18277535	18277735	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14632.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	4.85	2.01	1.14	3.62	5.73	4.39	7.97	4.88	3.74	2.51	6.53	0.94
Merged-chr11-117018637-1	chr11	117018537	117018737	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58146.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	4.85	3.52	10.27	6.44	2.86	5.02	1.0	4.37	5.11	5.02	2.01	5.64
Merged-chr7-82820846-1	chr7	82820746	82820946	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46487.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.83	4.02	3.42	1.21	6.55	0.31	4.65	4.4	3.15	2.01	3.52	2.19
Merged-chr11-9136658-1	chr11	9136558	9136758	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001159402)	TTS (NM_001159402)	18151.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	7.67	4.53	2.28	2.01	2.86	6.27	1.99	3.31	5.7	2.01	6.03	2.51
Merged-chr13-112142794-1	chr13	112142694	112142894	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145657.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.81	3.02	4.56	4.02	5.73	4.39	1.66	6.42	3.93	0.0	4.52	2.82
Merged-chr2-26578647-2	chr2	26578555	26578755	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2401.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	5.25	3.77	13.12	6.03	11.45	3.45	3.65	4.63	7.28	4.02	9.04	2.51
Merged-chr8-104369781-1	chr8	104369681	104369881	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	26026.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.81	2.01	2.85	0.8	5.32	3.45	3.99	5.78	1.18	1.51	5.02	5.95
Merged-chr2-25366179-1	chr2	25366079	25366279	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	-516.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	2.02	1.76	1.14	2.41	5.73	2.82	1.66	4.54	10.23	5.02	5.53	6.89
Merged-chr2-158534291-1	chr2	158534191	158534391	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145015, intron 5 of 14)	intron (NM_001145015, intron 5 of 14)	21495.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	4.04	2.26	5.7	4.83	6.55	5.96	1.99	4.4	6.69	2.01	9.55	4.39
Merged-chr2-26504402-1	chr2	26504302	26504502	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	475.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	9.69	3.52	6.85	7.24	8.59	4.08	7.64	2.75	5.51	2.51	9.55	5.64
Merged-chr2-136919558-1	chr2	136919458	136919658	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	20207.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	3.23	5.03	4.56	3.22	5.73	11.6	4.65	4.23	2.75	6.53	3.01	5.01
Merged-chr1-155070038-1	chr1	155069938	155070138	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	13226.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.63	0.25	3.42	3.22	6.14	4.7	6.64	3.81	8.65	9.54	6.53	5.33
Merged-chr11-106037469-1	chr11	106037369	106037569	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	597.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	1.21	3.27	0.0	2.41	2.45	6.59	1.99	3.39	9.24	8.54	2.01	2.19
Merged-chr12-51593469-1	chr12	51593369	51593569	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_007728, exon 1 of 11)	5' UTR (NM_007728, exon 1 of 11)	128.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	7.27	7.8	7.99	1.61	0.41	4.39	7.64	3.06	3.15	5.02	9.55	2.19
Merged-chrX-56692743-1	chrX	56692643	56692843	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-39018.0	NM_010211	14199.0	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	1.62	2.77	7.99	4.02	2.86	2.2	4.65	3.76	2.36	6.53	5.02	3.76
Merged-chr11-107625790-1	chr11	107625690	107625890	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198298, intron 14 of 31)	intron (NM_198298, intron 14 of 31)	-11932.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	4.85	2.26	3.42	2.82	7.36	0.31	2.99	5.94	5.11	6.53	4.02	6.27
Merged-chr10-96876539-1	chr10	96876439	96876639	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-159229.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	4.04	0.0	1.14	0.8	5.73	2.51	4.65	3.11	2.56	1.0	5.02	0.94
Merged-chr18-58570590-1	chr18	58570490	58570690	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	14350.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	1.21	1.01	0.0	3.22	2.45	4.08	0.66	6.11	2.75	7.03	1.0	3.76
Merged-chr4-40285851-1	chr4	40285751	40285951	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6430.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	1.21	2.52	5.7	2.41	6.14	2.51	1.99	3.48	9.83	6.53	5.02	5.33
Merged-chr19-3955301-1	chr19	3955201	3955401	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3507.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	2.42	3.77	3.99	1.61	4.91	6.27	1.33	3.98	3.74	4.52	5.02	3.45
Merged-chr10-43173406-1	chr10	43173306	43173506	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175407, intron 1 of 6)	CpG	1124.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	3.23	3.27	1.14	3.62	3.27	3.76	1.66	1.43	2.95	8.03	3.52	3.13
Merged-chr13-103918581-1	chr13	103918481	103918681	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	2005.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	7.67	8.3	1.71	2.01	3.68	6.59	1.0	4.01	7.47	4.02	4.02	5.95
Merged-chr7-16974376-1	chr7	16974276	16974476	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14697.0	NM_001007569	71691.0	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik|4930488B01Rik|AI844408|Pnma8a|R74771	PNMA-like 1	protein-coding	2.83	3.02	5.7	1.61	2.45	5.64	6.31	4.46	2.36	2.01	4.02	3.13
Merged-chr14-55629545-1	chr14	55629445	55629645	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153402, intron 18 of 28)	intron (NR_153402, intron 18 of 28)	6139.0	NR_153401	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	3.63	4.53	2.85	3.62	3.27	4.39	1.33	4.85	9.05	2.51	6.03	2.51
Merged-chr8-107437448-1	chr8	107437348	107437548	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	1050.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	3.27	9.13	4.42	1.23	1.88	4.98	4.51	5.31	5.02	4.52	6.27
Merged-chr12-73044803-1	chr12	73044703	73044903	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009189, intron 1 of 1)	CpG	1909.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	8.08	3.27	7.42	2.82	5.73	5.64	7.64	4.35	5.31	5.02	5.02	6.89
Merged-chr18-77813846-1	chr18	77813746	77813946	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-17456.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.81	6.79	1.14	5.63	8.18	3.45	2.99	5.16	10.23	4.02	6.53	6.27
Merged-chr13-93793558-1	chr13	93793458	93793658	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 2 of 7)	intron (NM_009712, intron 2 of 7)	2781.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	2.83	2.52	2.28	3.62	3.27	5.02	1.33	4.26	3.54	4.02	5.02	4.39
Merged-chr19-45746501-1	chr19	45746401	45746601	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3062.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	13.73	4.28	2.28	5.63	8.18	7.21	0.66	4.01	11.01	4.02	5.53	3.76
Merged-chr18-53247696-1	chr18	53247596	53247796	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	RSINE1|SINE|B4	2034.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.04	3.77	3.99	8.04	6.55	4.7	4.65	4.09	2.16	4.02	6.53	2.82
Merged-chr11-46442086-1	chr11	46441986	46442186	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025426, exon 3 of 3)	3' UTR (NM_025426, exon 3 of 3)	5125.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	3.23	6.04	3.99	9.65	5.73	5.33	2.66	3.79	3.54	0.5	3.01	5.33
Merged-chr13-41614691-1	chr13	41614591	41614791	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	8475.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.85	2.52	6.85	8.85	1.64	3.76	4.65	4.91	7.47	0.0	4.02	6.27
Merged-chr5-99406057-1	chr5	99405957	99406157	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-153130.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.81	0.75	3.42	0.8	2.45	5.64	2.66	3.67	4.13	2.51	3.01	5.01
Merged-chr10-59109263-1	chr10	59109163	59109363	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172788, intron 8 of 9)	ERVL-B4-int|LTR|ERVL	112584.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	6.46	6.54	6.28	5.63	4.91	9.09	4.65	3.62	4.72	5.52	5.53	4.39
Merged-chr8-26154066-2	chr8	26153968	26154168	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4101.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	8.88	1.76	7.42	4.02	2.86	5.02	3.99	6.87	6.49	6.03	11.56	6.89
Merged-chr18-7756935-2	chr18	7756826	7757026	+	545.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111906.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	7.67	6.54	9.13	2.41	2.86	2.51	1.66	3.34	9.24	9.04	7.54	7.83
Merged-chr1-170850069-2	chr1	170849938	170850138	+	545.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 3 of 15)	intron (NM_001081304, intron 3 of 15)	17733.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	8.08	3.52	9.7	4.02	4.5	3.14	5.31	2.21	7.47	4.52	6.53	4.7
Merged-chr17-34642574-1	chr17	34642474	34642674	+	545.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2309.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	2.42	4.53	0.0	3.62	4.5	5.64	5.31	4.23	4.72	9.54	3.52	2.51
Merged-chr2-157031026-2	chr2	157030919	157031119	+	545.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 7 of 14)	intron (NM_001164663, intron 7 of 14)	-23944.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	4.85	4.53	0.0	4.83	6.14	6.9	4.98	4.07	7.47	12.05	7.54	5.64
Merged-chr11-117826907-1	chr11	117826807	117827007	+	545.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-893.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.81	3.27	3.42	2.41	3.68	6.9	2.66	3.76	6.88	3.51	10.05	7.21
Merged-chr5-121592614-1	chr5	121592514	121592714	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	1210.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.81	8.8	10.27	8.85	9.41	1.25	5.65	4.43	6.1	6.03	7.03	2.82
Merged-chr16-13294405-1	chr16	13294305	13294505	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122667, intron 2 of 16)	intron (NM_001122667, intron 2 of 16)	29326.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.65	3.02	6.85	6.84	8.59	5.02	3.32	3.67	3.34	2.51	5.02	4.7
Merged-chr2-130629200-1	chr2	130629100	130629300	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080562, intron 1 of 5)	intron (NM_080562, intron 1 of 5)	827.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	6.86	1.51	1.14	1.61	6.14	4.39	2.66	2.72	0.79	7.03	2.51	5.64
Merged-chr6-38826058-1	chr6	38825958	38826158	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11253.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	3.22	3.27	3.14	5.65	4.12	0.98	0.0	1.0	2.51
Merged-chr5-77289838-1	chr5	77289738	77289938	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17081.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	2.02	4.53	6.28	2.41	4.09	2.82	0.0	3.28	11.21	6.53	8.04	4.07
Merged-chr11-86753260-1	chr11	86753160	86753360	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	4307.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	1.62	0.75	0.0	1.61	1.64	1.25	5.31	4.57	1.57	0.0	5.02	5.95
Merged-chr9-108338165-1	chr9	108338065	108338265	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-915.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	2.83	3.52	6.28	0.0	2.45	4.7	1.0	2.05	4.33	4.02	5.53	3.76
Merged-chr2-166714837-1	chr2	166714737	166714937	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1005.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.65	1.76	0.0	2.01	3.68	4.39	3.99	4.93	7.08	2.51	3.52	2.19
Merged-chr15-59005233-1	chr15	59005133	59005333	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	71423.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.85	1.26	2.28	2.41	2.45	5.33	2.66	4.29	3.54	3.51	3.52	5.33
Merged-chr11-74526684-1	chr11	74526584	74526784	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	63474.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.02	2.52	0.0	3.22	4.5	4.39	1.33	2.97	1.18	8.54	3.52	6.27
Merged-chr1-46852444-1	chr1	46852344	46852544	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	1174.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	7.67	2.01	3.42	4.02	7.77	5.96	3.32	5.58	15.54	7.53	5.02	8.77
Merged-chr13-24965734-1	chr13	24965634	24965834	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008156, intron 11 of 25)	ERVB7_2-LTR_MM|LTR|ERVK	22582.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	2.83	1.76	3.42	0.8	4.5	1.57	6.98	3.9	3.74	2.51	6.53	3.76
Merged-chr17-73005266-1	chr17	73005166	73005366	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86961.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.81	1.76	5.13	0.8	6.55	1.25	6.64	6.36	3.34	3.01	5.53	5.64
Merged-chr18-36384865-1	chr18	36384765	36384965	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	36241.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	3.63	7.04	10.27	4.83	3.27	3.45	1.33	3.17	2.36	1.51	5.53	1.57
Merged-chr2-161041418-1	chr2	161041318	161041518	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67668.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	6.06	5.28	15.4	4.42	4.5	3.76	1.66	3.5	7.28	10.54	5.53	5.64
Merged-chrX-94648728-1	chrX	94648628	94648828	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	12659.0	NM_008179	14853.0	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	0.4	4.02	2.28	4.02	1.64	5.02	3.65	4.21	0.0	0.5	1.0	0.0
Merged-chr12-111326274-1	chr12	111326174	111326374	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 7 of 36)	intron (NM_183016, intron 7 of 36)	51444.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.67	6.79	12.55	4.02	0.82	4.7	1.66	4.74	3.34	0.5	3.52	0.63
Merged-chr4-124228742-1	chr4	124228642	124228842	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	257217.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	2.02	3.02	6.28	8.45	6.14	11.92	1.66	5.36	5.9	4.02	9.04	4.7
Merged-chr1-7204923-1	chr1	7204823	7205023	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	116003.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.44	3.77	0.0	2.41	6.14	1.25	4.32	4.12	5.31	5.02	9.04	4.07
Merged-chr13-23401116-1	chr13	23401016	23401216	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	22750.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	2.02	4.78	2.28	2.41	4.91	5.02	1.0	2.44	1.97	1.0	0.0	0.63
Merged-chr16-52451979-1	chr16	52451879	52452079	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	1102.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	3.63	13.08	9.7	1.61	4.5	10.35	4.32	3.22	7.67	3.51	4.52	0.94
Merged-chr16-36936932-1	chr16	36936832	36937032	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1949.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	8.48	6.54	2.28	5.63	7.36	5.33	4.65	1.49	8.85	2.01	5.53	2.82
Merged-chr8-36937740-1	chr8	36937640	36937840	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001194940, exon 2 of 18)	exon (NM_001194940, exon 2 of 18)	14702.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.42	3.52	1.14	8.04	1.64	1.25	4.65	4.63	2.36	1.0	1.0	2.19
Merged-chr2-69676892-1	chr2	69676792	69676992	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081087, intron 3 of 5)	B2_Mm2|SINE|B2	6772.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	5.65	2.77	4.56	3.22	1.23	5.64	0.66	1.15	9.24	8.54	9.55	5.33
Merged-chr12-87444582-1	chr12	87444482	87444682	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013372)	promoter-TSS (NM_001013372)	-565.0	NM_001013372	654309.0	Mm.442579	NM_001013372	ENSMUSG00000079036	Nrp	-	neural regeneration protein	protein-coding	1.62	1.76	1.14	0.4	2.05	0.63	4.32	3.45	2.36	8.54	2.51	1.88
Merged-chr3-103019512-1	chr3	103019412	103019612	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-1034.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	1.62	1.76	5.13	0.0	2.05	2.82	3.99	0.95	7.87	3.01	3.01	2.82
Merged-chr2-144338310-1	chr2	144338210	144338410	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6230.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	4.44	3.27	4.56	2.01	6.14	4.7	2.99	2.1	8.26	7.53	3.52	10.96
Merged-chr7-88252790-1	chr7	88252690	88252890	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-25295.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.83	5.79	2.85	3.62	6.14	0.63	1.0	4.82	3.93	8.03	2.01	4.7
Merged-chr7-4789560-1	chr7	4789460	4789660	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029384)	promoter-TSS (NM_029384)	0.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	3.23	2.77	3.99	2.41	9.0	1.25	4.32	4.43	3.54	5.52	10.05	3.76
Merged-chr2-166026146-1	chr2	166026046	166026246	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	33509.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	3.02	4.56	3.22	4.91	4.7	1.66	4.35	7.08	5.52	1.51	1.88
Merged-chrX-106144064-1	chrX	106143964	106144164	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 1 of 2)	intron (NM_205820, intron 1 of 2)	789.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	1.62	1.01	1.14	1.61	0.82	5.02	2.33	5.52	3.34	1.51	1.0	2.51
Merged-chr2-163727582-1	chr2	163727482	163727682	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007398, exon 11 of 12)	exon (NM_007398, exon 11 of 12)	22657.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.23	2.26	3.42	3.62	3.68	5.64	0.66	5.58	4.72	1.51	3.52	1.25
Merged-chr8-64880836-1	chr8	64880736	64880936	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30912.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	6.86	0.5	0.57	0.4	10.64	4.08	4.32	5.75	7.67	3.51	7.03	7.21
Merged-chr4-148903132-1	chr4	148903032	148903232	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	49190.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	3.63	6.29	3.42	3.22	3.27	4.7	0.66	3.14	3.15	5.02	1.51	1.57
Merged-chr3-152191256-1	chr3	152191156	152191356	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356364, intron 1 of 2)	tRNA-Ala-GCY_|tRNA|tRNA	2589.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	5.65	7.8	4.56	3.22	2.05	7.21	7.97	1.65	2.95	5.52	2.01	3.45
Merged-chr10-59335078-1	chr10	59334978	59335178	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11782.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	1.62	3.02	2.28	1.61	5.32	5.02	5.98	4.74	2.56	0.0	3.01	0.31
Merged-chr2-90744489-1	chr2	90744389	90744589	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-881.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	2.42	2.52	9.13	1.61	4.91	5.02	3.32	5.13	6.69	4.52	10.55	7.52
Merged-chr12-35293870-1	chr12	35293770	35293970	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98973.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	1.62	3.27	2.28	1.61	1.23	1.25	3.99	3.45	6.1	7.03	3.52	1.25
Merged-chr1-138253116-1	chr1	138253016	138253216	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20622.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.85	0.25	2.28	1.61	6.55	3.14	4.32	4.26	2.95	3.01	5.02	2.51
Merged-chr6-145822339-1	chr6	145822239	145822439	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	13956.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.4	1.26	2.85	0.0	0.82	0.0	4.98	3.59	1.97	0.0	0.5	2.82
Merged-chr14-70859031-1	chr14	70858931	70859131	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	6098.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	2.42	1.76	7.99	0.0	6.55	1.25	0.66	2.97	0.2	1.0	1.0	0.63
Merged-chr7-41599768-1	chr7	41599668	41599868	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33763.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	1.62	1.01	4.56	3.22	2.05	5.64	2.99	4.09	1.77	1.0	2.01	1.88
Merged-chr10-61980656-1	chr10	61980556	61980756	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1548.0	NM_007731	12817.0	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	7.67	6.54	5.13	4.02	6.14	4.39	1.0	4.88	4.33	1.0	8.04	4.39
Merged-chr11-45649453-1	chr11	45649353	45649553	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-158630.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.42	0.0	1.14	3.22	2.05	1.25	4.65	4.65	2.36	2.01	4.02	3.13
Merged-chr17-29035259-1	chr17	29035159	29035359	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036613, intron 1 of 6)	B4|SINE|B4	2599.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.4	2.01	1.14	1.21	3.27	1.25	2.66	4.4	0.79	0.5	7.03	2.51
Merged-chr11-74840213-1	chr11	74840113	74840313	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	9289.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	1.21	1.76	1.14	2.01	6.14	0.31	0.33	5.13	2.56	1.0	0.5	4.7
Merged-chr2-160700470-1	chr2	160700370	160700570	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009408, intron 9 of 20)	intron (NM_009408, intron 9 of 20)	-30840.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	3.63	2.26	4.56	3.22	3.27	2.51	4.98	4.71	6.1	4.02	4.02	1.57
Merged-chr1-134098113-1	chr1	134098013	134098213	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13129.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	5.65	3.27	7.99	2.41	5.32	3.14	10.63	9.14	7.47	2.01	8.54	3.45
Merged-chr14-103650165-1	chr14	103650065	103650265	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361639)	promoter-TSS (NM_001361639)	-63.0	NM_198014	105439.0	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	8.08	5.53	3.99	7.64	18.41	3.14	5.98	4.26	6.1	2.01	8.04	6.58
Merged-chr13-46984085-1	chr13	46983985	46984185	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	30765.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	4.44	3.52	3.42	2.82	3.27	13.17	4.98	3.31	7.67	1.51	6.03	8.77
Merged-chr19-37543728-1	chr19	37543628	37543828	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-6690.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	1.62	3.77	1.14	2.01	2.45	5.64	1.0	3.11	4.92	3.01	8.54	2.82
Merged-chr11-83608234-1	chr11	83608134	83608334	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-15147.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	2.02	0.5	3.42	1.61	8.18	2.51	1.33	5.33	2.75	2.01	5.53	2.19
Merged-chr5-125177137-1	chr5	125177037	125177237	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	2077.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.63	0.75	0.0	0.8	0.82	4.7	0.0	4.01	3.34	3.51	2.51	1.88
Merged-chr11-114983314-1	chr11	114983214	114983414	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6572.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	1.21	0.0	0.0	0.0	6.14	15.68	4.98	3.53	0.2	0.0	0.5	1.57
Merged-chr5-20955480-1	chr5	20955380	20955580	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	-3658.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	1.62	2.77	1.14	5.63	1.64	4.7	3.99	5.27	3.74	1.0	0.5	1.25
Merged-chr7-111429611-1	chr7	111429511	111429711	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-306936.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	8.08	6.04	6.28	7.64	4.5	6.59	3.32	1.96	6.1	2.51	6.03	5.33
Merged-chr9-119981047-1	chr9	119980947	119981147	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1976.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	7.67	4.28	3.42	4.42	6.14	4.08	2.66	1.74	8.85	5.52	4.52	5.33
Merged-chr1-5018897-1	chr1	5018797	5018997	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	-163.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	2.02	2.52	1.14	4.02	4.91	2.2	5.31	5.13	3.34	4.52	2.51	10.65
Merged-chr11-59810873-1	chr11	59810773	59810973	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	793.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	1.21	2.26	1.71	0.8	3.27	5.02	3.32	4.01	3.74	5.52	5.02	6.58
Merged-chr8-10026404-1	chr8	10026304	10026504	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033622, intron 4 of 6)	L1M4|LINE|L1	19771.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.81	3.27	3.42	2.41	0.82	3.76	5.31	3.7	2.16	4.52	11.56	4.7
Merged-chr2-36265493-1	chr2	36265393	36265593	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	35067.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.23	2.01	2.28	3.22	4.09	6.27	0.33	3.5	1.77	3.51	4.52	1.57
Merged-chr13-49097787-1	chr13	49097687	49097887	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	50541.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	3.52	7.99	6.44	2.05	2.51	4.98	4.15	2.56	6.03	10.05	6.89
Merged-chr13-45945651-1	chr13	45945551	45945751	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	19340.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.63	1.51	6.85	0.8	6.14	6.27	1.0	3.98	2.56	1.0	1.51	0.63
Merged-chr3-84648268-1	chr3	84648168	84648368	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17924.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	1.51	6.28	3.22	0.82	2.2	2.66	0.53	6.1	4.52	10.05	5.64
Merged-chr7-24546710-1	chr7	24546610	24546810	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037143)	promoter-TSS (NM_001037143)	11.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	5.65	9.56	3.99	7.64	9.41	10.98	9.97	8.19	8.85	10.04	12.56	6.89
Merged-chr8-34530228-1	chr8	34530128	34530328	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110088.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	2.42	2.26	1.14	3.22	5.73	4.7	1.99	5.8	0.98	0.0	0.5	1.25
Merged-chr13-54685323-1	chr13	54685223	54685423	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	2485.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	1.21	4.53	2.28	0.4	2.45	1.88	2.33	4.01	4.72	5.52	2.51	5.33
Merged-chr8-124241116-1	chr8	124241016	124241216	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	9722.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.81	0.25	1.71	3.62	2.45	2.51	2.33	4.4	8.06	5.02	8.04	3.45
Merged-chr4-101355564-1	chr4	101355464	101355664	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	684.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	5.65	3.02	11.98	4.83	7.36	2.82	8.3	3.73	4.33	5.52	8.54	7.83
Merged-chr5-92442414-1	chr5	92442314	92442514	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-7215.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	2.83	0.5	2.85	0.0	1.64	2.51	2.99	0.39	3.54	0.0	0.5	3.45
Merged-chr9-35110016-1	chr9	35109916	35110116	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-6712.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.83	4.53	1.14	3.62	3.27	6.27	0.33	5.83	10.42	7.03	8.04	4.7
Merged-chr12-31947697-1	chr12	31947597	31947797	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177993, intron 1 of 8)	B3|SINE|B2	2548.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.85	4.02	3.99	2.01	5.32	5.64	0.66	1.01	9.83	6.53	4.52	3.45
Merged-chr7-121089806-1	chr7	121089706	121089906	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139310, intron 1 of 28)	intron (NM_139310, intron 1 of 28)	6368.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	4.85	3.27	5.7	0.8	3.27	7.21	2.99	3.5	11.01	1.51	7.03	7.52
Merged-chr3-96475101-1	chr3	96475001	96475201	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-22795.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	3.63	2.52	6.28	1.21	2.45	7.21	5.98	4.15	7.08	2.51	4.52	1.25
Merged-chr8-68362418-1	chr8	68362318	68362518	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172753, intron 8 of 9)	intron (NM_172753, intron 8 of 9)	-6041.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	2.26	0.0	4.42	4.91	3.76	4.32	5.66	0.0	0.0	1.51	0.63
Merged-chrX-56597386-1	chrX	56597286	56597486	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146234, intron 1 of 3)	intron (NM_146234, intron 1 of 3)	533.0	NM_146234	236792.0	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	2.42	2.26	6.28	0.4	0.41	3.14	5.98	4.88	6.69	0.0	6.03	6.58
Merged-chr4-75318319-1	chr4	75318219	75318419	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40027.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.63	1.51	1.14	7.24	3.27	7.21	11.29	3.45	3.74	3.01	7.54	2.82
Merged-chr18-61014692-1	chr18	61014592	61014792	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_201353)	promoter-TSS (NM_201353)	-493.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	4.44	1.01	1.14	2.41	2.05	5.33	1.33	3.9	1.18	2.51	7.03	6.27
Merged-chr18-82916480-1	chr18	82916380	82916580	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	1848.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.44	8.3	4.56	3.62	4.09	3.76	4.65	2.16	10.23	5.02	3.52	6.89
Merged-chr3-58411773-1	chr3	58411673	58411873	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2947.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	7.67	1.26	2.28	2.41	5.73	2.51	3.65	7.29	4.13	5.02	5.02	10.02
Merged-chr2-53001344-1	chr2	53001244	53001444	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MER119|DNA|hAT-Charlie	143476.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.85	2.01	6.85	0.8	4.5	5.33	2.33	4.4	4.13	2.51	7.03	0.31
Merged-chr17-65728211-1	chr17	65728111	65728311	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	44541.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.4	1.51	1.14	0.4	1.64	0.63	1.33	1.74	2.36	6.53	0.0	3.76
Merged-chr8-71610210-1	chr8	71610110	71610310	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-814.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	4.85	2.77	2.85	6.44	5.73	6.9	4.98	3.81	3.15	4.52	0.0	3.76
Merged-chr2-30705668-1	chr2	30705568	30705768	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15542.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	4.04	4.28	3.42	3.22	6.55	4.39	5.31	3.17	5.7	14.56	2.01	4.39
Merged-chr4-88475258-1	chr4	88475158	88475358	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-36332.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.25	3.52	2.28	0.8	0.82	2.2	3.99	3.67	3.93	4.02	3.52	1.57
Merged-chr18-67776102-1	chr18	67776002	67776202	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045376)	TTS (NR_045376)	1226.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	2.83	2.26	2.28	2.01	7.77	9.09	2.99	2.78	5.7	8.54	4.52	5.64
Merged-chr10-60730477-1	chr10	60730377	60730577	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	22305.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	2.42	3.52	1.71	2.01	3.68	1.25	4.65	4.54	1.77	2.01	3.52	2.19
Merged-chr2-165900346-1	chr2	165900246	165900446	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15508.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.23	2.26	7.99	0.8	9.0	10.66	4.98	3.14	7.47	6.53	3.01	0.94
Merged-chr13-5800047-1	chr13	5799947	5800147	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58045.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	2.01	3.99	0.0	4.5	5.96	3.99	3.73	3.54	2.01	3.52	1.88
Merged-chr2-31768784-1	chr2	31768684	31768884	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	8611.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.27	3.77	10.27	0.0	5.73	2.51	2.66	6.9	8.65	4.02	4.02	6.89
Merged-chr1-155533653-1	chr1	155533553	155533753	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6542.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	2.83	4.02	4.56	0.0	3.27	4.08	1.66	4.91	2.56	6.03	1.51	0.94
Merged-chr12-26414848-2	chr12	26414745	26414945	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105856)	TTS (NR_105856)	165.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	5.65	5.53	13.69	7.24	4.91	10.03	13.95	5.66	4.72	4.52	4.02	8.77
Merged-chr10-7391222-1	chr10	7391122	7391322	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	82255.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	3.23	2.01	1.71	2.01	3.68	3.45	2.99	5.21	2.16	1.0	4.52	0.63
Merged-chr19-5448820-1	chr19	5448720	5448920	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010235, intron 1 of 3)	CpG	1122.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	6.46	3.02	4.56	3.22	4.5	6.59	2.99	5.05	3.15	5.02	3.52	5.95
Merged-chr5-90908398-1	chr5	90908298	90908498	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	4499.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.06	2.52	6.85	0.0	7.77	8.47	1.0	1.12	10.03	5.02	6.03	1.57
Merged-chr1-7099093-1	chr1	7098993	7099193	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	10173.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.63	6.54	0.0	0.8	2.05	2.51	1.99	1.99	9.64	1.0	9.55	1.57
Merged-chr8-88757197-1	chr8	88757097	88757297	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60169.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.83	3.52	2.28	5.63	6.95	5.02	6.31	3.06	1.77	1.0	2.51	2.82
Merged-chr13-19952435-2	chr13	19952341	19952541	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128184.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	7.27	6.54	5.7	4.83	4.09	3.45	4.32	3.93	0.79	0.0	5.02	1.57
Merged-chr2-52917017-1	chr2	52916917	52917117	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	59149.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.23	9.31	0.0	6.03	2.86	12.86	2.66	4.35	8.46	5.52	7.03	3.76
Merged-chr17-17749577-1	chr17	17749477	17749677	+	544.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45636.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	5.65	6.79	3.42	8.04	4.09	5.64	5.65	4.15	4.72	5.52	10.05	4.39
Merged-chr16-32276065-2	chr16	32275965	32276165	+	544.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1396.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	4.44	10.06	11.41	4.83	2.86	0.63	4.98	5.69	6.29	7.03	5.02	1.25
Merged-chr12-34702736-1	chr12	34702636	34702836	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-173847.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.83	2.01	1.71	2.41	2.45	6.9	3.99	4.29	3.34	7.03	3.01	0.63
Merged-chrX-167357569-1	chrX	167357469	167357669	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313758, intron 4 of 6)	intron (NM_001313758, intron 4 of 6)	25180.0	NM_026662	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	4.44	3.02	6.85	2.41	3.27	2.51	7.97	4.88	3.74	4.02	9.55	1.88
Merged-chr8-122923656-1	chr8	122923556	122923756	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	75282.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.06	4.53	5.7	5.63	4.91	5.33	1.0	4.18	7.67	3.51	13.06	3.13
Merged-chr16-58702486-1	chr16	58702386	58702586	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16238.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	2.42	3.52	0.0	3.62	5.73	5.33	1.99	7.35	5.31	3.51	8.04	1.57
Merged-chr10-61602516-1	chr10	61602416	61602616	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177511, intron 1 of 3)	intron (NM_001177511, intron 1 of 3)	7032.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	1.62	3.52	5.13	2.41	0.82	4.39	0.33	4.68	3.15	2.01	3.52	4.07
Merged-chr13-98955796-1	chr13	98955696	98955896	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	28769.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.85	8.05	1.14	4.83	1.23	3.14	3.32	2.58	11.8	10.04	5.02	3.45
Merged-chr10-63021724-1	chr10	63021624	63021824	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079824, intron 1 of 9)	intron (NM_001079824, intron 1 of 9)	-1424.0	NM_001359260	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	1.62	2.52	3.42	4.83	7.77	1.88	5.31	4.07	5.9	4.52	1.0	3.76
Merged-chr16-23855418-1	chr16	23855318	23855518	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35426.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	1.62	1.01	7.99	4.02	2.45	5.02	3.32	8.41	4.52	2.01	5.53	1.88
Merged-chr9-78499303-1	chr9	78499203	78499403	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17579.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	6.06	2.26	1.14	2.41	3.27	4.08	2.66	5.64	9.24	2.01	9.04	4.39
Merged-chrX-167318413-1	chrX	167318313	167318513	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	MLT1J|LTR|ERVL-MaLR	12158.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	5.65	1.76	7.42	10.46	10.23	7.21	1.99	4.43	8.26	3.51	5.02	2.51
Merged-chr16-81434419-1	chr16	81434319	81434519	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113208, intron 2 of 17)	intron (NM_001113208, intron 2 of 17)	233722.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.81	1.01	3.42	2.41	6.55	1.25	2.99	4.57	1.57	4.52	0.5	1.57
Merged-chr11-115354417-1	chr11	115354317	115354517	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001346774, exon 12 of 19)	exon (NM_001346774, exon 12 of 19)	13302.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	5.25	6.79	7.42	8.85	4.91	8.47	2.66	2.02	5.31	2.51	5.53	5.64
Merged-chrX-17467003-1	chrX	17466903	17467103	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	105004.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	3.23	2.01	2.28	1.61	1.64	0.63	5.98	4.77	0.39	0.5	5.02	0.0
Merged-chr11-78828528-1	chr11	78828428	78828628	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001076681, intron 1 of 3)	ID_B1|SINE|B4	1933.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	6.46	0.75	1.71	1.21	6.55	4.7	0.0	4.01	5.9	5.52	4.52	3.13
Merged-chr11-104352315-1	chr11	104352215	104352415	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 7 of 14)	ID4_|SINE|ID	89976.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.04	1.51	10.27	2.82	2.86	2.51	1.33	5.94	8.26	6.03	5.02	11.28
Merged-chr6-29244073-1	chr6	29243973	29244173	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27709.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	2.02	2.52	0.0	0.8	2.86	5.02	1.0	4.82	5.9	1.51	3.52	2.51
Merged-chr16-17760839-1	chr16	17760739	17760939	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145479, intron 1 of 6)	intron (NM_145479, intron 1 of 6)	1218.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	1.62	7.29	7.42	8.45	3.68	3.14	0.66	1.09	7.47	9.54	11.05	4.39
Merged-chr17-6316964-1	chr17	6316864	6317064	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166629, intron 1 of 4)	CpG	510.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	3.23	4.02	2.28	4.83	2.45	5.02	2.33	5.1	4.72	11.55	11.56	8.14
Merged-chr9-62040346-1	chr9	62040246	62040446	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13556.0	NM_028748	74090.0	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	15.34	2.77	3.42	6.44	2.45	4.39	1.99	4.32	14.36	9.04	6.03	5.95
Merged-chr15-79514135-1	chr15	79514035	79514235	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2273.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	2.42	0.5	0.0	6.03	7.77	11.6	4.65	5.02	10.42	1.0	6.53	3.76
Merged-chr3-103335539-1	chr3	103335439	103335639	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079830, intron 11 of 18)	intron (NM_001079830, intron 11 of 18)	56246.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.81	4.28	4.56	4.83	3.68	3.76	1.99	5.05	5.31	3.51	4.52	8.14
Merged-chr18-67203007-1	chr18	67202907	67203107	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-2352.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.65	4.78	3.42	6.44	0.0	2.51	6.31	4.15	1.77	2.01	4.02	2.51
Merged-chr7-55967585-1	chr7	55967485	55967685	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	intron (NR_015495, intron 1 of 5)	5054.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	8.08	6.79	4.56	2.41	5.73	8.15	3.32	0.59	4.52	9.04	7.54	5.64
Merged-chr11-95687358-1	chr11	95687258	95687458	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20401.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	10.09	8.05	7.99	5.23	7.36	0.63	3.32	4.07	3.74	5.02	1.51	0.94
Merged-chr15-99224602-1	chr15	99224502	99224702	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010601)	promoter-TSS (NM_010601)	-374.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	3.23	4.02	2.85	6.84	2.45	3.45	4.32	3.73	5.51	1.51	5.02	5.64
Merged-chr1-54846512-1	chr1	54846412	54846612	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	79875.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.81	0.0	0.0	0.8	0.82	1.25	3.99	3.64	1.38	1.51	1.0	1.88
Merged-chr6-114655453-1	chr6	114655353	114655553	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	12356.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	3.23	5.53	1.71	2.41	6.14	5.96	5.98	5.27	7.47	7.53	9.04	3.45
Merged-chr10-19005434-1	chr10	19005334	19005534	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166402, intron 5 of 7)	intron (NM_001166402, intron 5 of 7)	6529.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.85	6.54	4.56	3.22	6.95	9.41	0.0	0.39	5.31	6.03	3.52	0.63
Merged-chr10-70035865-1	chr10	70035765	70035965	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-61256.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	1.62	0.0	1.71	4.83	0.0	0.31	0.66	0.84	4.72	4.02	8.54	6.27
Merged-chr19-3753961-1	chr19	3753861	3754061	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13460.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	4.04	2.01	0.0	6.84	2.05	4.7	6.31	3.93	9.64	4.02	3.52	5.01
Merged-chr2-29252340-1	chr2	29252240	29252440	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_029460, intron 1 of 1)	CpG	653.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	6.86	6.29	0.0	0.8	0.41	2.2	2.99	5.36	7.47	1.0	2.01	1.57
Merged-chr17-29486090-1	chr17	29485990	29486190	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4955.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	7.27	2.26	2.28	0.8	3.68	5.33	3.32	4.99	5.51	2.01	8.04	10.34
Merged-chr4-130264951-1	chr4	130264851	130265051	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356465, intron 2 of 9)	intron (NM_001356465, intron 2 of 9)	6483.0	NM_001356465	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	2.42	3.77	2.85	4.42	3.68	5.33	3.32	3.64	6.49	5.52	2.01	4.7
Merged-chr6-122591576-1	chr6	122591476	122591676	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	10868.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	2.42	0.5	1.14	0.8	8.18	6.59	0.66	4.04	5.31	5.52	4.02	3.45
Merged-chr3-21916110-1	chr3	21916010	21916210	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-160542.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.67	5.03	14.83	2.41	0.0	5.33	2.33	7.37	5.7	7.53	3.52	0.31
Merged-chr13-119614007-1	chr13	119613907	119614107	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9812.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.4	0.5	0.0	0.0	7.36	3.14	1.33	3.7	1.57	2.51	1.0	5.64
Merged-chr5-99219942-1	chr5	99219842	99220042	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	PB1D10|SINE|Alu	32985.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.86	2.52	0.57	0.8	5.73	6.59	3.32	4.29	7.67	11.05	6.03	1.57
Merged-chr17-27957138-1	chr17	27957038	27957238	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	47832.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.08	4.02	5.13	4.83	4.09	3.76	4.65	4.93	0.39	2.51	4.02	0.94
Merged-chr18-80470998-1	chr18	80470898	80471098	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1331.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	2.42	5.53	7.99	5.63	3.27	5.96	7.31	7.43	5.51	6.53	6.53	0.94
Merged-chr5-136138080-1	chr5	136137980	136138180	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028070)	promoter-TSS (NM_028070)	-701.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	5.65	2.77	10.84	4.83	1.64	6.59	4.32	2.13	11.01	4.52	2.01	1.88
Merged-chr7-81318994-2	chr7	81318862	81319062	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 14 of 21)	intron (NM_008803, intron 14 of 21)	26272.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	1.76	6.28	0.0	5.73	2.82	2.99	6.73	5.11	7.53	7.54	7.21
Merged-chr6-8420818-1	chr6	8420718	8420918	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88343.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.85	0.0	0.0	0.8	2.45	5.64	2.99	4.49	1.57	1.0	3.01	2.51
Merged-chr8-83166450-1	chr8	83166350	83166550	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	1098.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.67	4.78	8.56	9.65	6.14	10.98	12.29	3.93	4.92	8.03	5.02	7.21
Merged-chr7-99607802-1	chr7	99607702	99607902	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19301.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	4.44	3.77	4.56	2.82	2.05	4.39	8.3	4.49	2.56	1.0	2.51	0.63
Merged-chr7-126894951-1	chr7	126894851	126895051	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026827, intron 3 of 5)	L2c|LINE|L2	3327.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	7.67	5.03	4.56	6.44	6.14	14.11	3.32	1.46	10.42	8.54	8.54	2.82
Merged-chr10-5806999-1	chr10	5806899	5807099	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1534.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	3.63	2.26	6.28	2.82	3.68	5.96	1.66	3.42	7.28	3.01	9.55	5.95
Merged-chr8-46850314-1	chr8	46850214	46850414	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110569.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.23	3.02	0.0	1.21	1.64	2.51	6.31	4.01	2.95	4.02	3.52	5.95
Merged-chr17-35666301-1	chr17	35666201	35666401	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175137, intron 3 of 28)	intron (NM_175137, intron 3 of 28)	1291.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	5.65	1.51	3.42	4.02	0.82	5.02	5.31	5.92	5.31	7.03	1.51	3.45
Merged-chr9-113795485-1	chr9	113795385	113795585	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	2155.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.46	5.53	4.56	8.04	2.86	3.14	4.65	9.28	6.69	2.01	3.01	2.51
Merged-chr7-98165031-1	chr7	98164931	98165131	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007602, intron 1 of 12)	B3|SINE|B2	-2689.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	4.85	6.04	14.83	5.63	6.95	3.45	3.65	5.3	4.72	7.03	5.53	8.77
Merged-chr10-112270406-1	chr10	112270306	112270506	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359752)	promoter-TSS (NM_001359752)	-715.0	NM_001359752	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	1.21	1.76	0.0	2.01	2.05	2.82	3.99	3.98	1.57	2.01	1.0	3.13
Merged-chr17-17845406-1	chr17	17845306	17845506	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008215, intron 4 of 4)	B3|SINE|B2	9782.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.23	2.01	4.56	3.62	4.91	5.02	1.99	2.92	13.18	7.53	10.05	4.7
Merged-chr13-91361698-1	chr13	91361598	91361798	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26387.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	1.62	4.53	3.99	4.42	3.68	7.21	4.32	3.84	4.92	5.52	0.5	1.25
Merged-chr19-43695866-1	chr19	43695766	43695966	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 3 of 12)	L2c|LINE|L2	6177.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	7.27	2.01	1.14	0.0	1.64	2.82	4.32	3.73	8.26	2.01	8.04	7.52
Merged-chr3-96105514-1	chr3	96105414	96105614	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025614, intron 1 of 11)	intron (NM_001025614, intron 1 of 11)	987.0	NM_001025614	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	7.67	3.02	2.28	6.44	3.68	2.51	4.32	2.27	5.11	9.54	3.52	3.45
Merged-chr19-57483034-1	chr19	57482934	57483134	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029839, intron 4 of 6)	intron (NM_029839, intron 4 of 6)	-25530.0	NR_040306	78073.0	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA	3.63	2.26	1.14	4.42	5.32	5.64	4.65	3.93	3.74	4.52	3.52	0.63
Merged-chr19-25027958-1	chr19	25027858	25028058	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	ORR1E|LTR|ERVL-MaLR	28429.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	8.48	4.78	4.56	2.01	4.91	9.41	1.33	3.48	1.97	0.0	3.01	0.63
Merged-chr16-58503075-1	chr16	58502975	58503175	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	L1ME1|LINE|L1	20351.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	1.62	2.52	0.0	6.84	5.32	1.57	3.99	4.91	2.36	1.51	3.01	1.57
Merged-chr1-133177576-1	chr1	133177476	133177676	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46410.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	2.42	5.03	3.99	0.4	2.86	6.59	3.32	3.34	8.06	2.01	2.01	1.25
Merged-chr5-92375996-1	chr5	92375896	92376096	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12138.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	5.25	2.77	9.13	3.62	2.05	7.21	8.64	3.9	7.47	7.53	9.04	9.08
Merged-chr7-35029696-1	chr7	35029596	35029796	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26870.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.81	0.0	1.14	0.0	6.14	1.25	5.31	4.79	4.13	2.51	3.01	3.45
Merged-chr6-31471546-1	chr6	31471446	31471646	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 10 of 17)	ORR1F|LTR|ERVL-MaLR	72718.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.81	1.01	10.27	3.22	5.73	4.39	4.32	5.69	3.93	4.02	3.01	5.33
Merged-chr5-140756853-1	chr5	140756753	140756953	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32726.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	1.62	2.01	3.42	1.61	5.73	5.64	2.66	4.6	1.57	0.0	0.0	1.57
Merged-chr18-24047648-1	chr18	24047548	24047748	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26835.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	2.42	4.78	4.56	6.03	6.55	5.33	1.66	3.87	4.13	5.52	3.01	1.88
Merged-chr19-6292916-1	chr19	6292816	6293016	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	RSINE1|SINE|B4	-13541.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	6.06	11.32	1.14	8.04	3.68	4.39	1.33	1.43	5.31	7.03	1.51	2.82
Merged-chr13-113306495-1	chr13	113306395	113306595	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	96836.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	8.88	5.79	11.41	4.83	0.0	0.63	0.0	0.53	0.2	0.0	0.0	0.63
Merged-chr1-46890680-1	chr1	46890580	46890780	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356417, intron 2 of 10)	B1_Mur1|SINE|Alu	35096.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	4.04	10.31	9.13	2.41	2.05	1.57	2.33	1.26	11.6	6.53	3.52	2.51
Merged-chr5-76118577-1	chr5	76118477	76118677	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21696.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	3.23	1.51	4.56	0.4	1.64	4.39	0.33	5.8	4.33	1.0	8.04	1.88
Merged-chr11-61457102-1	chr11	61457002	61457202	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3110.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	3.23	1.01	11.41	8.04	7.36	1.57	8.64	4.63	3.74	3.51	8.54	4.07
Merged-chr7-100537638-1	chr7	100537538	100537738	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183270, intron 1 of 1)	intron (NM_183270, intron 1 of 1)	538.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.27	2.52	7.99	0.8	8.18	3.45	2.33	4.57	3.54	1.51	2.01	3.13
Merged-chr13-34726370-1	chr13	34726270	34726470	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13272.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.04	3.27	0.0	4.02	4.09	6.59	6.31	4.79	6.69	10.04	6.03	1.57
Merged-chr5-41857739-1	chr5	41857639	41857839	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13424.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	1.62	3.02	1.14	9.25	1.64	1.57	4.65	5.41	2.75	3.01	2.51	2.19
Merged-chr8-8225306-1	chr8	8225206	8225406	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	435467.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.21	1.26	0.57	2.01	0.82	6.27	0.66	4.63	1.97	1.0	5.02	0.63
Merged-chr5-63971254-1	chr5	63971154	63971354	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2357.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	2.02	2.26	6.85	4.83	4.91	6.27	2.33	4.99	6.29	6.53	8.54	3.76
Merged-chr3-89246964-1	chr3	89246864	89247064	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310625, intron 2 of 4)	intron (NM_001310625, intron 2 of 4)	491.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	2.42	2.01	6.28	7.24	4.5	2.82	5.65	4.23	5.31	5.52	5.53	4.07
Merged-chr16-75900380-1	chr16	75900280	75900480	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	8886.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.75	3.42	7.64	5.73	4.7	3.65	3.93	6.1	3.01	9.04	5.33
Merged-chr6-97397807-1	chr6	97397707	97397907	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	URR1A|DNA|hAT-Charlie	61479.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.81	2.01	8.56	1.21	0.82	1.88	2.66	3.17	4.52	2.51	0.5	6.89
Merged-chr2-168112142-1	chr2	168112042	168112242	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31138.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	3.63	6.04	4.56	8.45	6.14	2.2	0.33	1.99	6.69	8.03	5.02	4.07
Merged-chr5-146784812-1	chr5	146784712	146784912	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	MLT1E2|LTR|ERVL-MaLR	10144.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.65	0.5	7.99	0.0	5.32	4.08	7.97	2.69	8.26	7.53	8.04	3.45
Merged-chr13-42394739-1	chr13	42394639	42394839	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93263.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.5	9.13	4.83	0.82	6.9	5.98	3.59	8.26	5.02	6.53	2.51
Merged-chr6-17282405-1	chr6	17282305	17282505	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001277756, exon 2 of 2)	3' UTR (NM_001277756, exon 2 of 2)	1220.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.0	0.0	2.28	3.62	2.86	5.02	1.33	4.32	1.77	7.03	0.0	1.57
Merged-chr8-47670791-1	chr8	47670691	47670891	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	4368.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	2.26	2.28	1.61	0.41	5.02	2.66	5.02	6.69	4.52	7.03	2.51
Merged-chr4-117557411-1	chr4	117557311	117557511	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356405, intron 2 of 8)	L2c|LINE|L2	7046.0	NM_080469	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	2.83	3.77	1.14	4.02	5.73	8.78	1.66	3.81	1.57	0.5	4.02	1.25
Merged-chr6-89679578-1	chr6	89679478	89679678	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34625.0	NM_053228	113855.0	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	2.83	2.26	5.7	3.62	6.55	2.51	1.33	11.41	10.03	4.02	8.04	5.33
Merged-chr5-86079462-1	chr5	86079362	86079562	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7716.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	3.23	1.01	3.42	1.21	6.14	4.08	3.99	5.21	3.74	8.54	10.05	3.45
Merged-chr10-12968464-1	chr10	12968364	12968564	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-4205.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	1.62	2.01	0.0	1.21	6.14	10.35	7.31	4.09	7.28	2.01	7.54	3.45
Merged-chr19-34067238-1	chr19	34067138	34067338	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027340)	promoter-TSS (NM_027340)	-120.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.0	1.01	0.0	2.41	2.45	3.76	4.98	4.35	0.2	0.5	0.5	2.19
Merged-chr9-40636228-1	chr9	40636128	40636328	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49736.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.83	1.26	1.14	4.02	9.41	1.88	0.0	4.68	7.87	4.02	4.52	3.13
Merged-chr11-78095109-1	chr11	78095009	78095209	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	436.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	4.44	2.77	2.28	1.61	4.5	3.45	1.33	3.28	7.08	9.04	10.05	3.76
Merged-chr16-23498847-1	chr16	23498747	23498947	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359083, intron 2 of 10)	MIR3|SINE|MIR	21968.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.4	6.54	6.85	8.04	0.0	4.39	1.33	3.62	6.29	4.02	4.02	5.95
Merged-chr11-72946549-2	chr11	72946459	72946659	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14610.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	7.27	2.01	3.99	2.82	6.95	7.84	2.66	2.5	9.05	9.54	4.52	4.07
Merged-chr13-43725866-1	chr13	43725766	43725966	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9075.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	3.23	6.79	4.56	4.02	7.77	7.21	7.97	2.75	3.54	12.05	5.02	6.27
Merged-chr8-120700243-1	chr8	120700143	120700343	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31923.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	6.46	2.52	1.14	8.04	4.91	7.53	5.31	4.88	7.67	4.52	7.54	0.94
Merged-chr1-80772725-1	chr1	80772625	80772825	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-14172.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	5.73	3.76	4.98	4.6	1.97	1.51	3.01	2.19
Merged-chr10-81288819-1	chr10	81288719	81288919	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	2448.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	4.04	2.26	3.42	1.61	2.86	3.76	1.33	1.12	5.9	7.53	2.51	5.01
Merged-chr5-92149451-1	chr5	92149351	92149551	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	11513.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	2.02	4.28	1.14	0.0	4.09	2.51	1.0	6.11	2.75	1.51	4.02	1.88
Merged-chrX-102017426-1	chrX	102017326	102017526	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	53881.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	2.42	0.75	3.42	6.03	6.14	4.39	1.66	4.04	3.34	7.03	2.51	1.57
Merged-chrX-37109736-1	chrX	37109636	37109836	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026573, intron 1 of 9)	intron (NM_026573, intron 1 of 9)	586.0	NM_026573	68134.0	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	2.42	4.28	0.0	1.21	3.68	6.27	5.98	4.04	4.52	6.53	4.02	0.63
Merged-chr11-31847845-1	chr11	31847745	31847945	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-23095.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	1.62	5.28	1.14	3.62	2.86	7.84	4.98	4.35	8.06	2.01	4.52	6.27
Merged-chr1-51580281-1	chr1	51580181	51580381	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	16437.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	4.04	3.77	3.99	10.05	5.73	2.82	1.66	4.43	3.15	5.02	4.52	0.63
Merged-chr15-77336590-1	chr15	77336490	77336690	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29537.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	4.04	0.0	3.42	0.0	8.18	5.02	2.99	4.46	2.36	9.54	4.52	9.08
Merged-chr12-83730397-1	chr12	83730297	83730497	+	543.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362271, intron 9 of 11)	intron (NM_001362271, intron 9 of 11)	-33237.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	2.02	1.51	1.14	0.0	7.36	5.64	5.31	4.37	3.15	0.5	1.0	2.51
Merged-chr6-108662853-1	chr6	108662753	108662953	+	543.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-1919.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.83	1.01	3.42	2.82	4.91	5.33	4.65	3.2	0.79	0.5	1.0	2.51
Merged-chr16-94066384-1	chr16	94066284	94066484	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18876.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	4.44	1.01	3.42	8.85	2.86	3.76	3.99	5.78	1.97	2.51	5.02	4.39
Merged-chr7-68369965-1	chr7	68369865	68370065	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47459.0	NR_046208	71244.0	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.81	4.02	1.14	4.42	0.82	4.08	4.65	2.89	4.52	1.51	6.53	1.88
Merged-chr3-58734028-1	chr3	58733928	58734128	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045167, intron 3 of 7)	MTC|LTR|ERVL-MaLR	41439.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	3.23	4.53	3.42	0.0	2.45	8.15	10.3	4.43	3.54	5.52	3.01	0.63
Merged-chr8-68277083-1	chr8	68276983	68277183	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	555.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.44	2.52	3.99	4.42	5.32	8.47	0.66	3.17	3.93	2.51	2.01	3.76
Merged-chr7-117481077-1	chr7	117480977	117481177	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100098.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.02	3.02	3.99	1.61	1.64	0.63	10.3	4.71	2.56	1.0	6.03	0.63
Merged-chr7-5112822-1	chr7	5112722	5112922	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145013, intron 2 of 2)	MTD|LTR|ERVL-MaLR	4089.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	3.63	0.0	7.99	0.0	4.91	3.14	5.98	4.37	0.2	2.51	10.05	3.76
Merged-chr17-13760689-1	chr17	13760589	13760789	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010806, exon 1 of 33)	exon (NM_010806, exon 1 of 33)	148.0	NM_010806	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.65	2.52	0.57	3.62	1.23	4.39	6.31	4.74	6.1	10.54	11.56	0.63
Merged-chr1-82235665-1	chr1	82235565	82235765	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010570, exon 2 of 2)	3' UTR (NM_010570, exon 2 of 2)	55774.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	1.21	1.01	1.14	7.24	1.64	1.88	6.31	4.6	3.15	5.02	0.5	0.31
Merged-chr5-107978999-1	chr5	107978899	107979099	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	8078.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.42	1.01	1.14	5.63	4.09	6.27	3.99	5.94	2.36	4.02	5.02	6.27
Merged-chr4-41756608-1	chr4	41756508	41756708	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_155499)	promoter-TSS (NR_155499)	398.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	6.86	4.02	10.84	3.22	4.5	4.08	6.31	4.93	3.15	3.51	6.53	1.88
Merged-chr3-97230309-1	chr3	97230209	97230409	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2945.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	1.62	2.26	1.14	2.41	5.32	3.45	3.65	6.76	3.54	5.02	8.04	4.7
Merged-chr19-45544702-1	chr19	45544602	45544802	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15862.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	1.62	3.77	6.85	7.64	4.09	2.51	6.64	1.54	5.11	3.01	8.04	1.57
Merged-chr16-5206303-1	chr16	5206203	5206403	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12B2|LTR|ERVK	-2291.0	NR_027804	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	1.62	1.01	1.14	0.0	2.05	4.7	1.99	4.12	3.15	0.0	1.0	0.63
Merged-chr4-129066513-1	chr4	129066413	129066613	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	L1_Mus2|LINE|L1	8242.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.46	1.51	1.14	4.83	7.77	8.47	2.99	1.01	5.11	8.03	7.03	3.76
Merged-chr4-132793538-1	chr4	132793438	132793638	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	RSINE1|SINE|B4	2826.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	8.48	6.79	4.56	4.42	4.91	11.6	4.32	3.64	4.72	4.52	5.02	9.71
Merged-chr17-15375872-1	chr17	15375772	15375972	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-49.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	7.67	3.02	2.28	4.83	4.09	6.27	2.66	3.17	5.7	5.52	9.55	3.76
Merged-chr4-115096310-1	chr4	115096210	115096410	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7602.0	NM_001164557	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	4.85	6.29	10.27	2.41	5.73	4.08	2.66	5.72	6.88	1.51	3.52	3.13
Merged-chr18-56745266-1	chr18	56745166	56745366	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 8 of 10)	intron (NM_010721, intron 8 of 10)	37453.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	8.08	4.02	5.13	3.62	2.05	6.27	2.33	4.37	4.52	2.51	10.05	6.27
Merged-chr10-100629947-1	chr10	100629847	100630047	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37561.0	NM_001081246	66605.0	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0.81	5.53	5.13	2.41	9.0	1.25	2.33	4.23	8.06	8.03	4.02	1.57
Merged-chr4-46041000-1	chr4	46040900	46041100	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021883, intron 1 of 9)	MIR3|SINE|MIR	1778.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	1.62	3.02	1.14	2.01	4.91	1.88	3.65	2.61	3.54	8.03	1.0	2.51
Merged-chr2-71044302-1	chr2	71044202	71044402	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	11304.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.81	0.75	2.28	0.0	4.91	2.82	3.65	3.34	1.77	0.5	1.0	5.33
Merged-chr9-92147752-1	chr9	92147652	92147852	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45184.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	1.62	5.03	2.28	2.41	6.14	3.45	1.99	7.23	6.29	2.01	5.02	5.33
Merged-chr3-65002784-1	chr3	65002684	65002884	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357358, intron 1 of 13)	intron (NM_001357358, intron 1 of 13)	53572.0	NM_001357358	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	2.01	0.0	0.0	3.68	5.02	5.31	3.95	1.97	2.01	5.02	5.64
Merged-chr10-21850461-1	chr10	21850361	21850561	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31723.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	1.26	7.99	6.03	8.59	2.2	2.66	4.65	2.56	1.0	2.51	1.57
Merged-chr19-60892355-1	chr19	60892255	60892455	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	2606.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	9.29	4.28	5.13	2.01	7.77	9.41	6.31	2.94	8.46	10.04	8.54	2.51
Merged-chr1-137923868-1	chr1	137923768	137923968	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42587.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.25	0.57	1.21	4.09	0.63	1.33	5.94	0.98	5.52	4.52	1.57
Merged-chr2-73513918-1	chr2	73513818	73514018	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15569.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.65	2.52	2.85	3.22	4.09	4.7	3.65	6.56	4.13	4.02	1.0	0.31
Merged-chr4-53209405-1	chr4	53209305	53209505	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-36791.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.4	2.01	1.14	1.61	3.27	3.14	7.31	5.66	3.15	2.01	1.0	1.25
Merged-chr8-84973809-1	chr8	84973709	84973909	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	4187.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	8.08	2.01	3.99	3.62	4.09	2.82	0.66	1.65	0.79	1.51	2.01	4.7
Merged-chr9-62828265-1	chr9	62828165	62828365	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-10522.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	6.86	5.28	3.42	2.01	4.5	1.25	3.65	2.75	4.33	7.53	4.02	3.13
Merged-chr3-41083977-1	chr3	41083877	41084077	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-931.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	10.5	9.81	2.28	6.84	9.0	9.09	3.65	6.5	7.08	12.05	11.56	10.02
Merged-chr2-155442742-1	chr2	155442642	155442842	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1959.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	2.02	2.77	1.14	3.22	1.23	3.76	1.99	0.84	10.23	3.51	3.52	5.64
Merged-chrX-53710402-1	chrX	53710302	53710502	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110489, intron 5 of 6)	intron (NR_110489, intron 5 of 6)	6176.0	NR_110489	331578.0	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	0.81	1.01	1.14	1.61	2.45	0.94	6.64	3.53	2.36	2.01	4.52	3.76
Merged-chr9-65404840-1	chr9	65404740	65404940	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162923, intron 2 of 4)	L1MC4a|LINE|L1	6352.0	NM_001033158	70784.0	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	4.85	2.01	7.99	0.8	4.91	5.64	5.31	4.35	2.56	0.5	4.02	2.82
Merged-chr4-134251407-1	chr4	134251307	134251507	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001099296, exon 2 of 2)	exon (NM_001099296, exon 2 of 2)	2699.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	4.85	5.79	2.28	2.01	4.91	5.96	0.66	3.64	5.11	3.51	3.52	1.57
Merged-chr10-22356611-1	chr10	22356511	22356711	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-5283.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	6.46	4.78	0.57	2.01	7.77	8.47	3.65	1.23	0.39	2.51	0.0	0.94
Merged-chr2-38433923-1	chr2	38433823	38434023	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-77774.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.25	2.01	5.7	0.0	4.5	4.39	3.32	3.73	3.74	4.02	5.02	2.19
Merged-chr7-98052163-1	chr7	98052063	98052263	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 48 of 48)	intron (NM_008663, intron 48 of 48)	57085.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	1.21	0.0	0.0	0.8	0.0	1.25	1.99	0.0	6.1	6.03	5.02	7.52
Merged-chr16-56016572-1	chr16	56016472	56016672	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001024622, exon 5 of 5)	3' UTR (NM_001024622, exon 5 of 5)	13145.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	4.85	7.04	3.42	12.07	8.18	1.25	5.98	0.0	8.06	1.51	6.03	3.76
Merged-chr4-8699824-1	chr4	8699724	8699924	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	RSINE1|SINE|B4	9418.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.08	3.27	7.99	8.45	5.73	4.39	1.0	9.73	4.33	4.02	8.04	6.89
Merged-chr2-75892248-1	chr2	75892148	75892348	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172666, intron 13 of 19)	intron (NM_172666, intron 13 of 19)	46214.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	5.25	2.01	1.71	8.45	11.05	5.64	1.0	3.93	0.79	5.02	4.02	6.89
Merged-chr7-81211910-1	chr7	81211810	81212010	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1894.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.44	3.52	1.71	0.8	5.73	3.45	4.98	3.67	3.93	0.0	5.53	2.19
Merged-chr14-63085920-1	chr14	63085820	63086020	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30847.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	2.83	0.0	3.42	3.22	6.55	2.51	2.66	6.0	4.92	4.52	6.03	4.7
Merged-chr7-114294723-1	chr7	114294623	114294823	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-18607.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.83	2.52	3.99	3.62	1.64	3.45	4.32	1.07	2.95	1.51	2.01	2.51
Merged-chr2-58668197-1	chr2	58668097	58668297	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-86987.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.04	2.77	5.13	3.62	9.41	2.2	2.66	2.92	8.46	3.51	5.02	6.58
Merged-chr3-68778774-1	chr3	68778674	68778874	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17279.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	1.62	4.28	1.14	4.02	4.09	3.45	5.31	5.1	0.98	1.51	1.0	0.63
Merged-chr7-107599635-1	chr7	107599535	107599735	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	4584.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	6.46	2.77	6.28	2.01	4.91	7.53	5.31	4.04	3.74	7.03	1.0	3.45
Merged-chr19-16872752-1	chr19	16872652	16872852	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008023, exon 1 of 1)	exon (NM_008023, exon 1 of 1)	1078.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	6.46	6.04	0.57	4.02	3.68	2.51	6.31	3.81	3.93	3.51	2.51	1.88
Merged-chr3-68046009-1	chr3	68045909	68046109	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113419, intron 2 of 10)	intron (NM_001113419, intron 2 of 10)	-18793.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	2.42	2.52	2.28	2.41	5.73	2.51	0.0	3.93	4.52	2.01	4.02	1.57
Merged-chrX-73673348-1	chrX	73673248	73673448	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001142810, exon 1 of 13)	5' UTR (NM_001142810, exon 1 of 13)	215.0	NM_001142809	102857.0	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.81	1.01	4.56	2.41	2.86	5.02	5.31	4.57	0.98	5.02	7.03	1.57
Merged-chr17-35779151-1	chr17	35779051	35779251	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	6701.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.81	0.5	0.0	1.61	2.86	0.31	1.0	4.77	7.87	4.52	16.58	7.52
Merged-chr2-3715623-1	chr2	3715523	3715723	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	2165.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.25	9.31	1.71	2.41	4.5	4.08	1.33	4.63	2.75	3.01	5.02	4.07
Merged-chr9-72408440-1	chr9	72408340	72408540	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152222)	TTS (NR_152222)	1427.0	NR_152222	100502819.0	Mm.392319	NR_152222	ENSMUSG00000097211	BC065403	A930005F02Rik	cDNA sequence BC065403	ncRNA	5.65	7.55	6.85	3.62	0.0	4.7	1.0	4.32	5.9	3.01	3.01	1.88
Merged-chr11-85652304-1	chr11	85652204	85652404	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	L1MEc|LINE|L1	67440.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.04	3.27	1.14	4.83	8.59	3.76	6.64	4.54	2.95	0.5	2.01	3.13
Merged-chr8-82361020-1	chr8	82360920	82361120	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	41566.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.4	2.01	4.56	0.0	2.05	0.31	2.33	1.12	5.7	1.0	1.0	2.19
Merged-chr9-47643424-1	chr9	47643324	47643524	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	113072.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.65	4.53	1.14	4.83	4.09	7.84	1.33	4.6	4.33	8.54	2.51	3.76
Merged-chr9-13673478-1	chr9	13673378	13673578	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	11018.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.02	3.27	1.71	2.01	2.45	3.14	3.99	5.44	2.16	1.51	3.01	0.63
Merged-chr2-11554532-1	chr2	11554432	11554632	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-603.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.44	3.27	0.57	4.02	4.5	5.02	3.32	3.7	7.08	2.01	4.52	8.14
Merged-chr6-5324845-1	chr6	5324745	5324945	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-26472.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.0	0.5	1.14	0.0	0.82	0.63	1.0	0.0	7.87	2.51	8.04	10.34
Merged-chr1-165612912-1	chr1	165612812	165613012	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	RLTR19-int|LTR|ERVK	21629.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	1.21	2.52	0.0	4.83	4.5	1.88	5.31	4.15	5.51	0.0	4.02	0.31
Merged-chr14-103350086-1	chr14	103349986	103350186	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3286.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	2.02	6.29	0.57	4.83	1.64	2.51	5.98	4.6	5.31	5.52	4.02	4.39
Merged-chr2-45245277-1	chr2	45245177	45245377	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-127835.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.86	6.29	1.14	1.21	0.0	5.02	1.99	2.3	3.34	1.51	3.01	2.19
Merged-chr4-48046441-1	chr4	48046341	48046541	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1136.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	1.62	6.79	5.7	3.22	4.09	4.08	5.65	2.07	6.1	9.04	6.03	5.95
Merged-chr1-16305036-1	chr1	16304936	16305136	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	199154.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	8.48	4.53	0.0	3.22	3.27	4.7	2.33	4.82	4.72	6.03	7.03	0.63
Merged-chr6-134067157-1	chr6	134067057	134067257	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	MTD|LTR|ERVL-MaLR	31457.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.62	3.52	0.0	0.8	6.14	3.76	4.98	4.6	10.23	10.54	4.02	2.19
Merged-chr5-8423571-1	chr5	8423471	8423671	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190717)	promoter-TSS (NM_001190717)	733.0	NM_178766	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	2.42	3.27	0.0	1.21	5.73	3.76	7.97	5.41	2.95	5.52	6.03	2.19
Merged-chr17-83997943-1	chr17	83997843	83998043	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130994)	promoter-TSS (NR_130994)	-609.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	6.86	5.28	5.13	8.45	3.68	3.45	0.66	6.53	5.7	5.02	9.04	5.01
Merged-chr12-3674242-1	chr12	3674142	3674342	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	101258.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	1.21	0.0	2.28	2.82	3.68	7.21	6.64	2.86	12.39	7.03	8.54	1.25
Merged-chr6-148993951-1	chr6	148993851	148994051	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177192, intron 20 of 20)	intron (NM_177192, intron 20 of 20)	-47481.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	5.25	2.26	6.28	3.22	5.73	4.08	0.33	8.58	11.8	3.01	8.04	2.19
Merged-chr9-59340177-1	chr9	59340077	59340277	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153195, intron 5 of 15)	intron (NR_153195, intron 5 of 15)	13331.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	4.04	1.51	3.99	0.0	3.27	1.25	1.99	1.26	6.88	5.52	7.54	5.64
Merged-chr3-52444608-1	chr3	52444508	52444708	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72356.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	2.02	2.01	3.99	1.21	8.18	1.88	4.32	4.29	6.29	3.51	0.0	1.25
Merged-chr14-33235879-1	chr14	33235779	33235979	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	19056.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.83	1.51	2.28	8.04	3.68	8.78	3.32	3.87	3.74	7.53	5.53	2.51
Merged-chr10-80260025-1	chr10	80259925	80260125	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	987.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	1.62	1.76	1.71	0.8	0.41	2.51	2.99	0.59	5.11	7.03	0.5	1.25
Merged-chr1-74322621-1	chr1	74322521	74322721	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9989.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	2.42	1.51	2.28	4.02	3.68	5.02	3.32	1.09	4.72	2.51	17.08	7.21
Merged-chr16-94625094-1	chr16	94624994	94625194	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	MLT1G1|LTR|ERVL-MaLR	13675.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.63	6.29	5.7	4.02	4.91	0.63	1.0	3.31	6.49	7.03	3.01	5.01
Merged-chr14-120275195-1	chr14	120275095	120275295	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-474.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.27	6.04	11.41	13.27	9.0	10.98	20.59	15.7	16.33	14.06	13.06	16.29
Merged-chr11-77458440-1	chr11	77458340	77458540	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-5473.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.63	2.26	3.42	4.83	0.0	6.9	8.3	2.05	1.57	5.52	3.52	4.7
Merged-chr4-21879051-1	chr4	21878951	21879151	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172687)	promoter-TSS (NM_172687)	-595.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	4.85	2.52	11.41	0.8	5.73	0.63	1.33	4.88	2.36	3.01	3.52	1.25
Merged-chr5-86191567-1	chr5	86191467	86191667	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6334.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	4.85	6.79	2.28	11.26	1.64	3.14	2.99	3.81	8.06	9.04	6.03	5.64
Merged-chr11-65720148-1	chr11	65720048	65720248	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316368, intron 3 of 10)	intron (NM_001316368, intron 3 of 10)	14684.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	6.06	1.01	1.71	6.84	6.55	1.88	5.65	4.88	6.1	6.53	8.04	3.45
Merged-chr2-32385099-1	chr2	32384999	32385199	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008491, intron 5 of 5)	intron (NM_008491, intron 5 of 5)	2640.0	NM_008491	16819.0	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	3.63	1.76	3.99	3.22	1.64	4.7	1.33	2.66	4.13	5.02	5.53	4.7
Merged-chr12-75413922-1	chr12	75413822	75414022	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	2859.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	3.63	3.27	6.85	4.02	6.55	4.08	3.99	4.35	7.08	3.01	9.55	8.14
Merged-chr10-22358194-1	chr10	22358094	22358294	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3700.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	2.42	6.04	2.28	8.04	9.0	3.45	4.98	4.63	4.13	8.54	3.52	2.19
Merged-chr12-70101989-1	chr12	70101889	70102089	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081453, intron 1 of 28)	intron (NM_001081453, intron 1 of 28)	865.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.81	2.52	1.14	2.82	2.86	0.0	5.98	3.0	0.98	0.0	1.51	3.13
Merged-chr12-82441803-1	chr12	82441703	82441903	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 21 of 23)	RLTR31D_MM|LTR|ERVK	130454.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	7.67	7.04	5.13	3.22	4.91	4.7	1.66	3.73	12.39	7.03	1.0	2.19
Merged-chr12-76345956-1	chr12	76345856	76346056	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21065.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	2.83	2.26	6.85	3.22	5.73	4.39	3.65	5.47	8.46	6.53	8.04	2.82
Merged-chr7-84089168-1	chr7	84089068	84089268	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2663.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	2.42	0.5	0.0	0.0	1.23	5.64	1.99	3.81	3.15	7.53	3.52	3.76
Merged-chr4-57301847-1	chr4	57301747	57301947	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011207)	promoter-TSS (NM_011207)	-10.0	NM_011207	545622.0	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	7.27	1.26	3.42	2.82	1.64	8.47	1.33	4.51	0.39	0.5	3.01	1.57
Merged-chr2-112367433-1	chr2	112367333	112367533	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026519, exon 2 of 5)	exon (NM_026519, exon 2 of 5)	594.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	5.25	3.52	0.0	1.21	2.05	3.14	2.99	2.47	2.75	7.03	6.53	5.64
Merged-chr10-121316019-1	chr10	121315919	121316119	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-4623.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	3.52	1.14	6.03	3.68	3.76	4.65	4.49	4.92	12.55	5.02	5.33
Merged-chr5-8911725-1	chr5	8911625	8911825	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008830, intron 8 of 27)	intron (NM_008830, intron 8 of 27)	18004.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	1.62	4.02	0.57	1.61	4.91	5.64	3.65	1.54	2.16	0.5	4.02	3.45
Merged-chr19-36347686-1	chr19	36347586	36347786	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31381.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	2.83	2.52	2.85	2.82	0.82	2.51	5.31	4.4	3.15	2.01	0.0	1.88
Merged-chr13-64108482-1	chr13	64108382	64108582	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	-19281.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.4	0.0	7.99	5.63	1.64	0.0	0.0	1.65	8.26	2.01	12.06	3.76
Merged-chr14-56402581-1	chr14	56402481	56402681	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033043)	promoter-TSS (NM_001033043)	-116.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.0	0.5	0.0	0.0	0.0	0.63	0.0	0.34	5.51	3.51	8.04	4.07
Merged-chr6-31213116-1	chr6	31213016	31213216	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	5358.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.44	3.52	1.14	0.0	1.64	4.39	0.0	3.53	2.36	3.51	0.5	0.63
Merged-chr5-114658418-1	chr5	114658318	114658518	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_022017)	promoter-TSS (NM_022017)	3.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	7.67	6.04	3.99	6.03	4.5	4.39	5.65	5.86	9.24	8.54	11.56	4.39
Merged-chr3-115819570-1	chr3	115819470	115819670	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68489.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	2.83	3.52	1.14	0.0	3.27	4.08	5.31	4.88	6.88	3.01	2.51	5.33
Merged-chr1-72211757-1	chr1	72211657	72211857	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357488, intron 1 of 5)	CpG	550.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.81	2.01	1.71	2.01	0.0	5.33	0.66	2.27	0.79	0.5	1.0	0.94
Merged-chr5-25023164-1	chr5	25023064	25023264	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 2 of 15)	intron (NM_145401, intron 2 of 15)	-27411.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.42	1.01	3.99	0.4	6.95	3.14	6.64	4.63	3.15	3.51	0.0	1.57
Merged-chr1-39896715-1	chr1	39896615	39896815	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4198.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.04	0.0	3.99	1.21	0.82	0.63	1.99	6.64	7.08	0.5	2.01	5.33
Merged-chr19-5474445-1	chr19	5474345	5474545	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-245.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.81	2.26	0.0	0.8	0.41	4.7	0.0	3.79	3.74	3.01	1.0	3.76
Merged-chr2-18310451-1	chr2	18310351	18310551	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001190817, intron 3 of 12)	intron (NM_001190817, intron 3 of 12)	82379.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	8.88	2.52	2.28	7.64	4.5	1.57	3.32	5.16	3.34	9.54	5.02	2.19
Merged-chr3-89485359-1	chr3	89485259	89485459	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25788.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	9.69	4.53	2.28	5.23	8.18	10.66	4.65	3.22	7.47	5.52	12.06	3.76
Merged-chr2-90479319-1	chr2	90479219	90479419	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-145.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.27	6.29	4.56	2.01	7.36	4.08	3.99	3.34	3.34	1.51	3.52	3.45
Merged-chr10-128083812-1	chr10	128083712	128083912	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016774, intron 1 of 9)	CpG	505.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.81	2.01	4.56	0.0	11.05	3.76	6.64	2.75	2.75	2.01	0.5	5.01
Merged-chr19-3292218-1	chr19	3292118	3292318	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172252, intron 6 of 6)	intron (NM_172252, intron 6 of 6)	3298.0	NR_105950	102465594.0		NR_105950	ENSMUSG00000099261	Mir6984	Gm27771|mmu-mir-6984	microRNA 6984	ncRNA	8.88	2.26	5.13	0.8	4.09	5.64	1.66	2.58	8.65	5.52	11.56	9.71
Merged-chr6-99519245-1	chr6	99519145	99519345	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	1748.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.44	6.79	1.14	0.8	3.27	5.64	3.99	4.29	7.28	3.51	1.51	4.39
Merged-chr10-91207504-1	chr10	91207404	91207604	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151510)	TTS (NR_151510)	13115.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	9.69	2.01	1.14	0.8	3.27	6.9	5.31	2.72	7.67	7.03	10.55	2.51
Merged-chr9-47787733-1	chr9	47787633	47787833	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	30475.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.81	1.76	2.85	0.0	5.32	5.64	0.33	5.16	0.2	0.0	0.0	0.0
Merged-chr13-107795098-1	chr13	107794998	107795198	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	94966.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	1.01	1.71	0.4	2.45	3.14	1.33	2.97	1.57	1.51	1.0	0.0
Merged-chr7-43495586-1	chr7	43495486	43495686	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028737, intron 7 of 7)	intron (NM_028737, intron 7 of 7)	-5563.0	NM_001164518	210094.0	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	2.83	3.52	2.28	1.61	6.95	5.33	2.33	3.59	5.31	6.53	4.52	1.57
Merged-chr11-50259819-1	chr11	50259719	50259919	+	542.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175334, intron 4 of 4)	intron (NM_175334, intron 4 of 4)	-21287.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	3.23	1.01	0.0	4.83	3.27	5.33	5.31	3.39	2.56	0.5	9.04	0.94
Merged-chr15-99670618-2	chr15	99670501	99670701	+	542.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009597, exon 1 of 12)	5' UTR (NM_009597, exon 1 of 12)	224.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	4.04	7.55	5.13	8.04	4.09	3.76	1.0	1.35	5.11	15.06	6.03	6.27
Merged-chr4-128769432-1	chr4	128769332	128769532	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001009819)	TTS (NM_001009819)	10174.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	6.06	2.77	4.56	1.61	3.68	4.08	6.31	4.18	1.57	2.01	4.02	2.82
Merged-chr17-29033913-1	chr17	29033813	29034013	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036613, intron 1 of 6)	B1_Mm|SINE|Alu	1253.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.04	1.51	6.28	4.02	5.73	5.96	4.65	4.49	5.7	2.01	3.52	5.64
Merged-chr15-4580748-1	chr15	4580648	4580848	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-146462.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	4.04	2.77	2.28	2.41	2.05	4.08	3.32	9.11	6.1	3.01	8.04	1.88
Merged-chr1-87653279-1	chr1	87653179	87653379	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32967.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	2.42	2.01	3.42	3.22	6.95	3.14	9.63	1.88	7.28	2.51	7.54	4.39
Merged-chr16-17147628-1	chr16	17147528	17147728	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001306169)	promoter-TSS (NM_001306169)	-399.0	NM_001306169	76872.0	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	6.06	8.55	3.99	4.83	7.77	3.45	2.33	2.02	1.77	5.52	6.53	2.19
Merged-chr17-71252475-1	chr17	71252375	71252575	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001357336, exon 8 of 8)	3' UTR (NM_001357336, exon 8 of 8)	47821.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.4	0.25	3.42	1.61	1.23	5.33	1.0	3.67	1.18	2.51	2.51	3.13
Merged-chr12-80730730-1	chr12	80730630	80730830	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29985.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	6.46	5.53	2.28	1.21	4.91	4.7	1.0	5.07	1.57	0.0	3.01	0.63
Merged-chr2-30436299-1	chr2	30436199	30436399	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138748, intron 5 of 9)	intron (NM_138748, intron 5 of 9)	20249.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	1.62	0.0	1.14	0.0	6.14	7.21	5.31	4.21	6.69	7.53	9.55	6.58
Merged-chr1-127318528-1	chr1	127318428	127318628	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	113542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	2.01	1.71	4.02	5.73	1.25	3.65	5.83	3.15	1.0	1.51	2.82
Merged-chr11-102190981-1	chr11	102190881	102191081	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	1282.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	3.23	3.27	0.0	0.8	0.41	5.64	5.31	3.14	6.1	0.0	7.03	4.39
Merged-chr1-124103204-1	chr1	124103104	124103304	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-57645.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.42	4.02	2.85	6.84	11.45	7.53	4.65	4.93	5.31	1.51	10.55	3.45
Merged-chr18-39481704-1	chr18	39481604	39481804	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	5541.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.23	4.02	2.28	6.44	4.91	3.14	3.99	5.41	3.54	5.02	5.53	5.33
Merged-chr4-132784024-1	chr4	132783924	132784124	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12340.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	3.63	2.52	3.99	2.41	9.41	4.39	1.99	4.79	6.88	6.53	1.51	3.45
Merged-chr1-4963370-1	chr1	4963270	4963470	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177795, intron 2 of 5)	MTD|LTR|ERVL-MaLR	55364.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	2.42	2.26	6.85	3.62	3.68	1.88	4.32	8.69	6.1	2.51	9.04	6.27
Merged-chr12-73322757-1	chr12	73322657	73322857	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	35909.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.81	1.01	6.85	2.82	7.36	3.76	2.33	5.21	1.38	3.01	6.03	2.19
Merged-chr6-124425786-1	chr6	124425686	124425886	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9931.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	1.62	4.78	7.99	10.86	7.77	4.08	10.96	3.98	7.67	5.02	8.04	2.51
Merged-chr2-27728764-1	chr2	27728664	27728864	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18181.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.46	8.05	5.13	1.61	8.59	3.76	0.66	2.75	4.92	4.02	4.52	4.07
Merged-chr7-111663292-1	chr7	111663192	111663392	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360903, intron 1 of 10)	intron (NM_001360903, intron 1 of 10)	116685.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.81	0.5	0.0	4.02	1.23	1.25	7.64	4.04	1.97	1.0	3.52	2.51
Merged-chr11-79974262-1	chr11	79974162	79974362	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-11875.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	2.83	5.28	1.71	2.41	2.86	4.7	2.33	3.39	2.56	7.53	2.51	4.39
Merged-chr15-6388795-1	chr15	6388695	6388895	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	ID_B1|SINE|B4	2047.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	2.02	1.76	0.57	0.8	4.5	4.08	2.99	3.42	1.97	4.02	2.51	3.13
Merged-chr2-24385855-1	chr2	24385755	24385955	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	523.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	3.63	4.28	0.0	6.03	3.68	6.59	5.31	5.47	6.49	10.04	9.55	3.76
Merged-chr18-47734934-1	chr18	47734834	47735034	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54599.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	0.0	1.51	4.56	0.8	1.64	5.02	3.65	10.43	0.0	3.01	1.0	0.31
Merged-chr1-171871909-1	chr1	171871809	171872009	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289470, intron 3 of 8)	MER63C|DNA|hAT-Blackjack	32212.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.0	1.01	5.13	1.61	4.09	7.84	1.99	3.79	5.9	5.52	9.04	4.7
Merged-chr15-78610467-1	chr15	78610367	78610567	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028195, intron 7 of 12)	intron (NM_028195, intron 7 of 12)	13420.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.04	3.52	6.85	3.22	7.36	5.96	2.66	4.88	5.31	5.52	3.52	5.01
Merged-chr12-44936885-1	chr12	44936785	44936985	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	137598.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	1.01	1.14	1.61	2.45	0.63	4.32	2.27	7.08	10.54	7.03	5.33
Merged-chr6-81412541-1	chr6	81412441	81412641	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	483122.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.0	2.52	4.56	3.62	7.36	0.63	5.31	4.12	3.54	4.52	13.57	5.95
Merged-chr3-94841629-1	chr3	94841529	94841729	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	4062.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	5.25	1.76	1.14	1.21	4.09	3.14	4.65	4.04	5.31	0.5	2.01	7.52
Merged-chr16-55778703-1	chr16	55778603	55778803	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	43435.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.42	4.53	5.13	0.8	3.27	10.98	4.98	2.1	7.47	18.08	8.54	2.51
Merged-chr1-169459573-1	chr1	169459473	169459673	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71891.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	4.85	5.03	7.99	6.03	4.09	2.51	2.33	5.66	2.16	1.51	3.01	5.64
Merged-chr11-29148747-1	chr11	29148647	29148847	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	17996.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	4.85	1.01	2.85	3.62	4.91	6.59	6.64	3.25	9.44	4.52	3.01	3.76
Merged-chr5-38516437-1	chr5	38516337	38516537	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14285.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.23	3.52	1.14	0.0	6.55	2.82	3.65	3.95	7.87	4.02	8.04	6.58
Merged-chr2-132570943-1	chr2	132570843	132571043	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355651, intron 2 of 19)	B2_Mm2|SINE|B2	7305.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	2.83	1.51	5.13	6.03	1.23	0.63	2.99	5.33	9.83	5.52	3.01	4.07
Merged-chr5-86066283-1	chr5	86066183	86066383	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-700.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	4.44	5.53	2.28	2.82	6.14	1.57	2.33	6.28	9.05	10.04	10.05	5.64
Merged-chr9-121419812-1	chr9	121419712	121419912	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	16366.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.25	3.02	2.85	8.45	2.86	7.53	5.31	3.22	4.92	4.52	7.03	5.95
Merged-chr14-27337346-1	chr14	27337246	27337446	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	1309.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.65	4.53	3.42	3.22	1.64	6.59	1.99	3.81	7.67	5.52	9.04	8.77
Merged-chr5-110613604-1	chr5	110613504	110613704	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104449, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	10099.0	NR_104449	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	5.65	0.5	2.28	0.0	6.95	4.08	2.99	3.56	4.13	0.5	4.02	1.57
Merged-chr2-144330678-1	chr2	144330578	144330778	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026924, intron 2 of 3)	CpG	684.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	1.62	0.5	0.57	2.82	11.45	0.31	3.99	4.46	1.77	2.01	3.52	3.45
Merged-chr5-16424924-1	chr5	16424824	16425024	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-128571.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	1.62	2.01	1.14	5.63	2.45	5.33	9.97	3.84	1.97	5.52	6.03	3.76
Merged-chr3-94821495-1	chr3	94821395	94821595	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16072.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	5.25	3.27	1.14	3.62	6.95	6.59	1.33	3.14	6.69	11.05	1.0	3.45
Merged-chr5-150841374-1	chr5	150841274	150841474	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111233.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.44	3.77	3.42	9.65	3.27	4.08	6.98	4.43	7.28	4.02	5.02	8.77
Merged-chr7-132475251-1	chr7	132475151	132475351	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101147.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	6.46	2.01	3.99	4.83	5.73	6.27	2.66	4.04	7.08	5.52	8.04	6.58
Merged-chr9-62366890-1	chr9	62366790	62366990	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	25547.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.63	3.77	1.71	6.44	5.73	3.76	4.32	4.91	0.0	1.0	4.52	0.63
Merged-chr14-8109237-1	chr14	8109137	8109337	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	RMER15|LTR|ERVL	11026.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	5.65	1.76	0.0	4.42	0.82	1.25	1.66	4.91	1.77	9.54	7.03	2.51
Merged-chr17-32166100-1	chr17	32166000	32166200	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008716, intron 1 of 32)	CpG	752.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.81	4.02	4.56	3.22	5.32	2.51	1.33	3.62	9.44	1.0	3.52	2.51
Merged-chr1-21071254-1	chr1	21071154	21071354	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	7971.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.85	4.78	4.56	4.02	2.05	4.39	6.64	5.05	0.0	0.0	1.0	2.19
Merged-chr4-117130720-1	chr4	117130620	117130820	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001313916, intron 10 of 14)	intron (NM_001313916, intron 10 of 14)	3243.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	2.42	2.01	10.27	2.41	4.09	1.88	2.33	3.08	3.93	3.51	3.52	2.82
Merged-chr5-137290827-1	chr5	137290727	137290927	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290010, exon 2 of 5)	exon (NM_001290010, exon 2 of 5)	2573.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	4.85	4.02	2.28	5.23	4.09	6.59	1.33	2.13	5.31	3.51	5.53	5.01
Merged-chr11-97719281-1	chr11	97719181	97719381	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054051, intron 9 of 9)	intron (NM_054051, intron 9 of 9)	15847.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	3.63	1.76	0.57	0.4	2.45	7.53	1.66	4.12	6.49	10.54	5.02	2.82
Merged-chr15-31566773-1	chr15	31566673	31566873	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-2060.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	1.62	3.27	1.14	0.8	2.45	6.27	5.65	1.21	4.52	1.51	2.01	1.88
Merged-chr4-107783678-1	chr4	107783578	107783778	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-18581.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	7.27	6.79	10.27	4.83	3.27	3.45	3.32	2.3	1.77	6.53	8.04	1.88
Merged-chr5-118595112-1	chr5	118595012	118595212	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	34393.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	1.62	2.77	1.14	0.0	2.86	5.02	4.98	4.77	4.92	3.01	1.0	2.82
Merged-chr14-27355800-1	chr14	27355700	27355900	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5589.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.81	3.27	2.28	3.22	4.09	2.82	3.99	1.46	7.08	7.03	4.02	0.31
Merged-chr2-18840143-1	chr2	18840043	18840243	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-38325.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.44	5.53	10.84	4.42	4.5	4.08	5.31	3.31	3.74	0.0	10.05	3.45
Merged-chr5-143472873-1	chr5	143472773	143472973	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	8380.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	4.85	7.29	6.85	0.8	4.09	2.82	1.33	8.3	7.08	6.53	1.51	2.51
Merged-chr18-41954095-1	chr18	41953995	41954195	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2901.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	3.23	2.77	6.28	4.83	4.91	6.9	4.32	2.8	3.15	3.01	0.5	2.82
Merged-chr7-100497614-1	chr7	100497514	100497714	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011671, intron 4 of 7)	intron (NM_011671, intron 4 of 7)	4256.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.85	3.02	2.28	2.82	6.55	0.0	0.33	2.72	7.28	3.51	6.03	5.33
Merged-chr17-28879991-1	chr17	28879891	28880091	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034885, intron 5 of 9)	intron (NM_001034885, intron 5 of 9)	21580.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	1.62	3.77	0.0	2.41	3.68	5.96	1.33	4.29	7.47	6.53	3.52	3.45
Merged-chr18-69629906-1	chr18	69629806	69630006	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	283746.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.23	1.26	1.14	4.83	2.45	8.15	3.32	4.26	3.34	0.0	4.02	4.07
Merged-chr8-72013697-1	chr8	72013597	72013797	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-4071.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	4.85	8.55	2.85	8.04	0.0	0.0	0.0	0.48	8.46	7.53	13.06	4.39
Merged-chr8-33902966-1	chr8	33902866	33903066	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	26897.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.83	0.75	5.7	0.8	0.82	4.7	0.0	2.8	2.36	9.04	7.54	6.27
Merged-chr7-109516918-1	chr7	109516818	109517018	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2277.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	4.44	4.28	2.28	3.22	4.09	4.7	1.66	1.12	4.92	3.01	1.51	2.51
Merged-chr10-6983884-1	chr10	6983784	6983984	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039652, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	-3419.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.85	4.53	2.85	1.61	5.32	5.64	10.96	4.96	1.18	1.0	3.01	4.07
Merged-chr11-83224967-1	chr11	83224867	83225067	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015519, intron 3 of 3)	RMER17C|LTR|ERVK	1391.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	4.44	2.77	2.85	3.62	8.18	5.33	2.66	2.86	7.67	12.05	5.53	4.39
Merged-chr18-74190220-1	chr18	74190120	74190320	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17598.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	4.04	2.77	0.0	0.0	3.68	8.15	3.99	3.81	5.9	1.0	1.51	4.39
Merged-chr9-108346382-1	chr9	108346282	108346482	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1449.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	2.83	7.8	5.7	7.24	5.73	6.59	1.99	1.26	6.88	6.03	4.02	1.88
Merged-chr5-146734232-1	chr5	146734132	146734332	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011669)	TTS (NM_011669)	60724.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.4	0.5	2.85	2.41	4.09	0.0	4.65	3.2	8.46	9.54	6.03	6.27
Merged-chr4-136034695-1	chr4	136034595	136034795	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13046.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	2.42	1.26	0.0	0.4	4.09	4.08	4.65	4.21	2.56	4.02	0.5	2.51
Merged-chr7-4572062-1	chr7	4571962	4572162	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207270, intron 7 of 19)	intron (NM_207270, intron 7 of 19)	-24521.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	9.69	6.04	15.4	6.84	3.27	0.63	1.99	2.33	8.06	4.02	5.53	3.45
Merged-chr2-155134296-1	chr2	155134196	155134396	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	815.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	2.02	2.52	5.7	2.82	3.27	5.96	6.98	1.4	4.52	3.01	1.51	4.39
Merged-chr9-90200743-1	chr9	90200643	90200843	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001326294)	TTS (NM_001326294)	37765.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.02	2.01	4.56	4.42	3.27	0.63	4.65	1.4	1.18	6.03	5.02	2.19
Merged-chr6-82125403-1	chr6	82125303	82125503	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83775.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	1.62	2.01	0.0	0.8	0.0	1.88	4.98	7.57	0.0	0.5	0.5	2.19
Merged-chr10-80696703-1	chr10	80696603	80696803	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5117.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	6.06	1.51	6.85	1.21	6.14	1.88	2.66	5.94	7.28	7.53	5.53	3.45
Merged-chr9-47772022-1	chr9	47771922	47772122	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	46186.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	3.77	5.7	0.8	3.68	3.14	2.66	2.55	7.08	3.51	7.54	1.25
Merged-chr3-135485990-1	chr3	135485890	135486090	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	379.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	8.08	10.56	3.99	4.42	2.86	5.02	2.66	9.98	7.08	5.52	11.05	8.14
Merged-chr17-51111426-1	chr17	51111326	51111526	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	47952.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.06	2.01	2.28	0.0	7.36	1.25	2.33	4.82	4.13	1.0	3.52	5.64
Merged-chr16-90219817-1	chr16	90219717	90219917	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-925.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	4.04	3.27	2.85	7.64	7.77	7.21	1.66	1.12	8.65	6.03	7.54	5.95
Merged-chr6-72092838-1	chr6	72092738	72092938	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-4770.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	2.02	3.77	0.0	4.02	4.5	5.02	3.65	3.76	0.59	3.51	0.0	0.94
Merged-chrX-164962993-1	chrX	164962893	164963093	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029730, intron 4 of 14)	intron (NM_029730, intron 4 of 14)	17382.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	1.21	1.26	2.85	2.41	3.27	1.88	3.99	2.92	2.56	1.51	1.0	0.0
Merged-chr19-43584969-1	chr19	43584869	43585069	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27356.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	4.85	3.52	1.71	0.8	3.27	4.7	2.66	5.07	4.52	2.01	0.5	0.94
Merged-chr4-101670591-1	chr4	101670491	101670691	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	22808.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	1.62	0.5	1.14	0.8	4.09	5.96	3.32	3.59	3.93	1.0	7.54	0.94
Merged-chr9-61590116-1	chr9	61590016	61590216	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	217750.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.63	5.28	1.14	3.62	6.95	3.76	9.97	4.35	4.13	7.03	5.02	2.19
Merged-chr2-36252712-1	chr2	36252612	36252812	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008969)	TTS (NM_008969)	22286.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	2.02	4.78	10.27	7.64	5.32	0.63	2.33	3.64	7.87	3.51	9.04	5.95
Merged-chr10-37323132-1	chr10	37323032	37323232	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184206.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	1.62	1.01	0.57	4.02	6.14	0.94	3.32	0.08	6.88	4.02	7.03	7.21
Merged-chr2-65396258-1	chr2	65396158	65396358	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31858.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	4.85	6.29	2.85	7.24	2.45	3.45	5.31	6.42	3.74	1.51	11.56	6.27
Merged-chr13-3546854-1	chr13	3546754	3546954	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	RMER6A|LTR|ERVK	8779.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	1.21	6.04	2.28	4.02	6.55	3.76	3.99	4.21	4.33	11.05	9.55	5.95
Merged-chr2-94470887-1	chr2	94470787	94470987	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32701.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	1.21	2.26	2.28	3.22	9.0	3.76	2.99	6.81	5.7	6.53	9.04	9.4
Merged-chr10-7673847-1	chr10	7673747	7673947	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145706, intron 5 of 7)	B3|SINE|B2	6343.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	12.52	6.29	5.13	4.02	1.23	7.21	1.99	3.53	6.88	1.51	7.54	2.82
Merged-chrX-170677857-1	chrX	170677757	170677957	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001199212, exon 8 of 8)	exon (NM_001199212, exon 8 of 8)	5213.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	4.85	3.77	2.85	0.8	3.27	3.45	4.65	4.32	2.36	4.52	3.01	2.19
Merged-chr7-46770863-1	chr7	46770763	46770963	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005247, intron 16 of 22)	intron (NM_001005247, intron 16 of 22)	19030.0	NM_001357491	20209.0	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	3.23	3.52	2.28	4.83	0.82	0.63	4.65	4.54	1.77	1.0	1.0	4.7
Merged-chr13-44673823-1	chr13	44673723	44673923	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56951.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.83	1.01	1.14	1.61	5.32	1.88	1.33	2.21	3.15	4.52	2.01	5.01
Merged-chr11-94676664-1	chr11	94676564	94676764	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	829.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	2.02	2.01	3.99	6.03	1.64	5.64	5.98	3.36	4.13	2.01	8.54	2.51
Merged-chr11-55121523-1	chr11	55121423	55121623	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	23538.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	3.52	1.14	1.61	1.23	1.88	0.66	1.29	3.15	1.0	1.51	2.82
Merged-chr5-120600482-1	chr5	120600382	120600582	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029408, exon 2 of 5)	exon (NM_029408, exon 2 of 5)	11459.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	1.62	2.52	0.0	4.42	3.68	5.02	1.33	3.98	6.29	12.55	9.04	4.39
Merged-chr1-151575377-1	chr1	151575277	151575477	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	4004.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.75	0.0	0.8	5.73	2.51	3.65	4.18	5.51	4.02	11.56	4.39
Merged-chr9-90251916-1	chr9	90251816	90252016	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	18853.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.83	1.76	3.99	0.8	0.82	5.64	3.65	2.66	4.13	3.01	5.53	3.13
Merged-chr6-8336995-1	chr6	8336895	8337095	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	77707.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.4	3.02	2.28	1.61	6.14	2.82	2.33	4.79	1.77	7.53	6.53	2.82
Merged-chr18-9507967-1	chr18	9507867	9508067	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57813.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.42	0.75	2.28	2.82	5.73	3.14	3.32	9.0	2.36	0.0	1.51	3.76
Merged-chr11-64835304-1	chr11	64835204	64835404	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143731.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.23	3.27	1.71	0.8	0.82	5.02	1.0	3.45	7.87	1.51	7.03	5.01
Merged-chr11-100692479-1	chr11	100692379	100692579	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11792.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	1.21	0.0	3.99	2.82	4.91	0.94	0.66	1.6	3.74	3.01	1.0	1.88
Merged-chr5-124530188-1	chr5	124530088	124530288	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	1203.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.4	3.02	3.42	0.8	0.82	5.02	0.66	2.97	4.72	0.5	1.0	3.13
Merged-chr1-107492676-1	chr1	107492576	107492776	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18747.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	3.23	5.03	2.85	2.41	4.91	1.88	3.32	5.58	3.34	2.51	5.53	0.94
Merged-chr3-31087795-1	chr3	31087695	31087895	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7263.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	8.08	2.77	2.28	3.62	3.27	6.27	10.3	3.5	7.08	7.03	3.01	2.19
Merged-chr4-150194139-1	chr4	150194039	150194239	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009802, intron 4 of 7)	B3|SINE|B2	6996.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	4.85	4.78	0.0	2.82	2.45	5.64	1.33	4.32	7.67	4.52	7.54	5.95
Merged-chr10-81412294-1	chr10	81412194	81412394	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152732)	TTS (NR_152732)	2719.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	1.21	4.02	0.0	1.61	1.23	5.64	1.99	3.93	5.51	8.03	5.53	1.25
Merged-chr8-88635524-1	chr8	88635424	88635624	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	604.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	9.29	11.07	13.12	14.88	5.32	4.39	10.3	4.82	13.37	20.59	11.56	9.71
Merged-chr18-6244352-1	chr18	6244252	6244452	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2828.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	5.65	3.02	12.55	3.62	3.68	5.64	3.65	5.13	11.01	4.02	0.0	3.76
Merged-chr17-29496009-1	chr17	29495909	29496109	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_008842)	TTS (NM_008842)	4964.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.23	7.55	7.42	6.84	3.27	5.33	0.66	0.0	5.31	3.51	3.01	1.57
Merged-chr1-136234240-1	chr1	136234140	136234340	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028872)	promoter-TSS (NM_028872)	40.0	NM_028872	67313.0	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54|Inava	RIKEN cDNA 5730559C18 gene	protein-coding	4.04	6.79	0.57	11.26	1.23	2.82	4.65	1.15	3.74	0.5	3.52	4.07
Merged-chrX-164946700-1	chrX	164946600	164946800	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029730, intron 10 of 14)	intron (NM_029730, intron 10 of 14)	33675.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	2.02	7.8	1.14	7.64	4.5	2.51	3.65	5.55	2.75	0.5	8.54	1.57
Merged-chr16-58016999-1	chr16	58016899	58017099	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-262262.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	3.23	1.26	2.28	0.8	2.05	3.76	5.31	8.66	0.59	0.0	0.0	0.31
Merged-chr16-31928465-1	chr16	31928365	31928565	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-5386.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	2.83	3.52	1.14	4.02	4.09	1.57	2.66	1.35	6.29	1.51	8.54	3.76
Merged-chr15-79934254-1	chr15	79934154	79934354	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	-1608.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	5.65	2.52	0.0	3.62	4.5	6.27	1.0	0.9	9.83	10.54	2.51	0.63
Merged-chr11-75532491-1	chr11	75532391	75532591	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199283, intron 1 of 13)	intron (NM_001199283, intron 1 of 13)	379.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.27	3.27	5.13	2.41	0.41	1.25	2.33	5.1	7.28	7.03	3.52	5.01
Merged-chr11-64396530-1	chr11	64396430	64396630	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38802.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	8.48	6.79	10.27	7.24	1.64	1.25	3.65	0.98	4.72	8.03	7.54	5.33
Merged-chr3-104780146-1	chr3	104780046	104780246	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-910.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	6.46	5.28	3.99	2.41	1.23	4.7	5.65	1.99	8.65	8.03	12.56	4.39
Merged-chr10-19562798-1	chr10	19562698	19562898	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29151.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	2.83	2.77	1.14	3.22	4.09	4.7	12.62	7.54	5.51	2.01	6.03	4.39
Merged-chr5-130075947-1	chr5	130075847	130076047	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013837, intron 1 of 5)	(TTTTG)n|Simple_repeat|Simple_repeat	2621.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	2.42	0.75	1.71	2.41	3.27	0.0	3.99	4.4	3.34	2.01	0.0	1.88
Merged-chr11-32567551-1	chr11	32567451	32567651	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	34285.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.85	0.75	3.42	4.83	6.14	4.7	1.0	4.18	1.18	1.0	2.01	0.63
Merged-chr5-67756378-1	chr5	67756278	67756478	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009727, intron 14 of 35)	intron (NM_009727, intron 14 of 35)	91053.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.25	3.52	1.14	4.83	5.73	0.94	1.66	6.39	7.08	6.03	3.52	1.25
Merged-chr5-99279218-1	chr5	99279118	99279318	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26291.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.02	5.03	5.7	4.42	10.64	5.33	2.33	4.21	10.62	3.51	7.54	1.88
Merged-chr9-3184564-1	chr9	3184464	3184664	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15249.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.0	1.01	0.0	0.8	6.55	1.88	3.32	5.55	1.97	0.0	0.0	0.0
Merged-chr11-87986169-1	chr11	87986069	87986269	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168471, intron 1 of 2)	intron (NM_001168471, intron 1 of 2)	416.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	6.06	3.02	3.42	1.61	3.27	2.2	2.66	3.42	4.33	1.0	3.52	1.25
Merged-chr14-27352629-1	chr14	27352529	27352729	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-8760.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.62	2.01	1.71	2.01	7.36	1.57	5.31	4.43	1.18	1.0	0.0	1.25
Merged-chr1-177984261-1	chr1	177984161	177984361	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7137.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	5.65	5.28	1.14	10.05	0.82	1.88	3.99	1.07	1.77	2.01	0.5	1.25
Merged-chr19-5068056-1	chr19	5067956	5068156	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054042)	promoter-TSS (NM_054042)	-22.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	3.63	8.3	2.85	6.84	3.27	5.02	7.97	4.91	8.65	1.0	4.02	3.13
Merged-chr3-90220331-1	chr3	90220231	90220431	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-453.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	3.63	3.27	2.28	0.0	3.68	4.7	1.33	3.34	8.65	8.03	7.54	5.01
Merged-chr14-63127030-1	chr14	63126930	63127130	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	ID_B1|SINE|B4	4568.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.81	3.77	3.42	1.61	4.91	3.76	1.33	3.95	4.13	3.51	0.5	4.39
Merged-chr6-34994836-1	chr6	34994736	34994936	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16837.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.63	1.51	1.71	0.8	3.68	3.14	4.65	3.28	0.98	2.01	5.02	2.51
Merged-chr1-191227826-1	chr1	191227726	191227926	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3372.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	4.85	3.27	6.85	4.02	5.32	0.63	3.32	4.29	9.24	3.01	7.54	4.07
Merged-chr13-37855524-1	chr13	37855424	37855624	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	28131.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	1.62	0.5	6.28	3.62	5.32	6.59	4.98	3.17	5.31	5.02	2.51	1.25
Merged-chr18-24074550-1	chr18	24074450	24074650	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47269.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	7.67	2.52	13.12	4.42	5.73	2.2	2.99	5.19	5.11	3.51	5.02	4.39
Merged-chr2-45069487-1	chr2	45069387	45069587	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	40790.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	2.26	1.14	4.02	6.55	8.47	0.66	3.76	9.44	6.03	4.02	0.0
Merged-chr4-63868981-1	chr4	63868881	63869081	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7697.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	4.04	1.76	2.28	2.41	2.45	2.2	4.65	3.9	1.57	4.02	8.54	3.13
Merged-chr1-54569256-1	chr1	54569156	54569356	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11572.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.23	3.77	1.14	1.61	4.09	2.51	9.3	3.36	8.85	7.53	5.53	4.07
Merged-chr3-154332575-1	chr3	154332475	154332675	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040387, intron 2 of 2)	intron (NR_040387, intron 2 of 2)	1754.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0.4	2.01	1.71	8.85	1.64	3.14	5.31	3.87	2.56	0.0	4.52	1.57
Merged-chr4-31964568-1	chr4	31964468	31964668	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009316, intron 1 of 16)	intron (NM_009316, intron 1 of 16)	461.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.04	4.28	2.28	4.02	6.14	4.39	1.0	2.36	6.29	7.53	4.52	3.76
Merged-chr7-19473109-1	chr7	19473009	19473209	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-14615.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.04	2.26	1.14	3.22	1.64	2.2	4.32	4.09	4.13	2.51	10.05	0.94
Merged-chr19-37072649-1	chr19	37072549	37072749	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 7 of 10)	intron (NM_198300, intron 7 of 10)	-101194.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	6.06	0.5	3.42	0.8	1.64	1.88	2.33	6.25	9.05	4.02	11.05	4.7
Merged-chr13-9029819-1	chr13	9029719	9029919	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-33807.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	7.67	2.26	11.98	2.41	5.32	3.76	4.32	2.66	11.6	5.52	5.53	3.76
Merged-chr10-19004286-1	chr10	19004186	19004386	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001166402, intron 6 of 7)	intron (NM_001166402, intron 6 of 7)	7677.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.27	6.04	1.14	0.0	4.91	8.78	0.0	0.03	3.74	6.53	0.0	1.88
Merged-chr4-135270105-1	chr4	135270005	135270205	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	2655.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.25	8.8	7.99	2.41	5.73	4.7	1.66	1.37	2.36	4.02	2.51	2.82
Merged-chr2-73274614-1	chr2	73274514	73274714	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001005343, exon 2 of 2)	3' UTR (NM_001005343, exon 2 of 2)	2688.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	5.65	7.55	1.14	0.4	4.5	5.64	0.0	3.87	2.36	1.51	2.51	5.64
Merged-chr14-13237241-1	chr14	13237141	13237341	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121588, intron 2 of 3)	intron (NR_121588, intron 2 of 3)	47397.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.4	3.52	0.0	0.4	1.64	0.94	5.31	3.25	2.56	1.0	2.01	1.88
Merged-chr14-55147944-1	chr14	55147844	55148044	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31009.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	2.42	3.52	2.85	4.02	7.36	4.39	4.32	4.51	3.15	3.01	1.51	7.52
Merged-chr8-71205735-1	chr8	71205635	71205835	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_131056, intron 1 of 4)	intron (NR_131056, intron 1 of 4)	1213.0	NR_131056	330796.0	Mm.258257	NR_131056		Gm38415	E230016D10	predicted gene, 38415	ncRNA	12.92	4.02	9.13	6.44	6.55	7.21	8.3	2.61	4.52	11.55	6.03	6.27
Merged-chr9-118668792-1	chr9	118668692	118668892	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-42900.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.81	2.52	7.99	1.61	2.86	6.59	2.33	1.93	7.28	7.53	6.03	1.57
Merged-chr10-30771210-1	chr10	30771110	30771310	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32116.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	1.21	3.77	5.13	6.03	7.77	4.39	5.65	3.87	8.65	8.03	8.54	4.7
Merged-chr4-34614012-1	chr4	34613912	34614112	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181406)	promoter-TSS (NM_181406)	930.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	1.21	0.5	0.0	1.21	5.73	1.25	1.99	2.02	1.77	2.51	4.02	3.45
Merged-chr10-86107594-1	chr10	86107494	86107694	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	11740.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	2.42	1.51	11.98	6.03	4.5	1.25	0.66	0.48	8.46	8.54	3.01	1.88
Merged-chr11-74834837-1	chr11	74834737	74834937	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	3913.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	5.25	6.79	1.14	3.62	0.0	5.02	1.66	3.73	2.95	2.01	4.52	1.88
Merged-chr11-96310338-1	chr11	96310238	96310438	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3428.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.81	1.26	2.28	7.24	1.64	5.64	0.66	4.18	3.54	1.51	2.01	1.57
Merged-chr6-37003395-1	chr6	37003295	37003495	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 19 of 32)	intron (NM_001347104, intron 19 of 32)	-193216.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	1.01	2.85	0.4	2.45	0.0	3.32	3.45	1.57	1.0	3.52	2.51
Merged-chr16-30633453-1	chr16	30633353	30633553	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33730.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.04	4.78	1.14	4.83	3.68	7.53	3.99	4.21	5.51	14.56	6.03	4.39
Merged-chr18-69407019-1	chr18	69406919	69407119	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	60859.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.21	1.51	0.57	0.8	0.82	3.76	1.99	2.27	7.08	0.5	10.55	3.76
Merged-chr1-178527312-1	chr1	178527212	178527412	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-1813.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	4.04	7.8	6.85	12.07	4.91	3.14	1.0	7.37	8.46	6.03	8.54	5.64
Merged-chr2-129305414-1	chr2	129305314	129305514	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040371, intron 3 of 4)	intron (NR_040371, intron 3 of 4)	4558.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.46	2.01	1.71	0.4	0.82	2.2	0.66	2.21	3.34	4.52	3.52	3.76
Merged-chr17-7320080-1	chr17	7319980	7320180	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4580.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	1.62	0.0	0.0	0.0	0.82	1.88	0.33	0.39	6.29	2.01	3.01	7.52
Merged-chr5-103377956-1	chr5	103377856	103378056	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31358.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	6.46	6.54	2.28	6.03	2.45	1.25	4.32	4.21	3.93	1.51	1.51	3.76
Merged-chr8-41299553-1	chr8	41299453	41299653	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 22 of 37)	PB1D7|SINE|Alu	59794.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.81	3.27	7.42	6.84	1.64	3.76	4.32	3.25	10.82	7.53	6.53	2.51
Merged-chr3-15007131-1	chr3	15007031	15007231	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	35930.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	2.83	3.02	4.56	4.02	3.68	7.53	7.97	3.59	0.39	1.0	2.01	0.0
Merged-chr6-50221081-1	chr6	50220981	50221181	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018769, exon 7 of 10)	exon (NM_018769, exon 7 of 10)	40688.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.25	1.26	0.57	0.8	3.68	6.27	0.66	3.95	7.87	3.51	3.52	4.39
Merged-chr3-9082532-1	chr3	9082432	9082632	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20568.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	4.44	3.27	2.28	2.01	7.77	4.39	11.96	4.63	4.52	5.52	1.51	7.52
Merged-chr8-84570577-1	chr8	84570477	84570677	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 22 of 47)	intron (NM_001252060, intron 22 of 47)	92275.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.02	2.77	2.28	1.61	1.23	5.64	1.33	0.39	4.13	2.01	0.0	4.07
Merged-chr16-30062699-1	chr16	30062599	30062799	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2658.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.23	2.52	1.14	0.8	3.68	0.63	2.33	4.88	8.85	8.03	6.03	4.07
Merged-chr10-93768349-1	chr10	93768249	93768449	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-63206.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	3.63	2.26	10.27	8.85	4.09	8.47	5.65	5.13	5.51	9.54	16.58	6.58
Merged-chr1-165761684-1	chr1	165761584	165761784	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2074.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.65	1.51	6.85	1.61	3.68	3.45	2.99	1.32	10.03	4.02	8.54	3.76
Merged-chr6-97853638-1	chr6	97853538	97853738	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	46580.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.44	4.53	6.85	9.25	9.0	5.64	17.27	4.43	7.87	1.51	6.53	4.39
Merged-chr2-131096659-1	chr2	131096559	131096759	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-9894.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	10.09	2.52	3.42	0.8	9.0	1.25	4.65	4.46	4.52	4.02	0.0	1.25
Merged-chr13-34154426-1	chr13	34154326	34154526	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8538.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	7.27	6.54	0.0	5.23	6.14	1.88	3.65	5.24	8.46	1.51	3.01	3.13
Merged-chr16-75876156-1	chr16	75876056	75876256	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	33110.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	6.06	3.02	3.99	1.61	0.41	4.7	1.0	1.93	5.9	8.03	3.01	4.07
Merged-chr1-165764769-1	chr1	165764669	165764869	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	MIRb|SINE|MIR	1011.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.85	4.28	1.14	4.02	3.68	6.27	9.3	3.25	13.37	5.52	8.04	2.19
Merged-chr2-91279141-1	chr2	91279041	91279241	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175123, intron 8 of 8)	intron (NM_175123, intron 8 of 8)	14026.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	3.23	4.02	2.28	3.62	1.64	5.64	0.33	3.9	3.34	6.53	4.02	3.13
Merged-chr15-66815589-1	chr15	66815489	66815689	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	16240.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	2.42	2.52	3.99	0.0	4.5	2.82	3.32	3.08	2.75	4.52	4.02	0.0
Merged-chr19-43880402-1	chr19	43880302	43880502	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-634.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	1.62	1.51	4.56	3.22	9.41	5.64	3.32	3.39	4.33	3.01	7.03	2.19
Merged-chr1-184173929-1	chr1	184173829	184174029	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	139548.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	6.86	4.53	6.28	3.22	2.45	1.25	1.99	5.66	3.93	1.0	6.53	3.13
Merged-chr5-64268009-1	chr5	64267909	64268109	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37652.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	2.52	0.0	0.0	1.64	5.64	2.33	4.96	6.29	2.01	9.55	2.51
Merged-chr11-59223036-1	chr11	59222936	59223136	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	5126.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	6.06	5.53	10.27	5.63	0.82	5.96	0.33	6.22	6.29	5.02	9.55	3.45
Merged-chr2-150845928-1	chr2	150845828	150846028	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-3358.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.46	3.02	2.85	0.8	4.91	4.7	5.31	4.35	4.33	2.51	1.51	2.82
Merged-chr1-37154327-1	chr1	37154227	37154427	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63951.0	NM_001282010	12790.0	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	4.04	0.5	0.0	1.21	0.41	4.7	3.99	3.39	1.97	0.0	2.01	0.63
Merged-chr9-104277742-1	chr9	104277642	104277842	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14812.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.25	3.27	7.42	3.22	5.32	4.7	2.33	3.93	5.31	6.03	8.04	3.76
Merged-chr11-54106512-1	chr11	54106412	54106612	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136076, intron 2 of 15)	intron (NM_001136076, intron 2 of 15)	5588.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	1.21	2.26	6.85	3.62	0.41	5.96	3.32	4.54	4.72	2.01	3.52	3.76
Merged-chr2-59127898-1	chr2	59127798	59127998	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	32785.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	1.62	2.52	4.56	6.84	6.14	3.76	1.33	3.56	2.36	5.02	3.52	3.13
Merged-chr19-5041769-1	chr19	5041669	5041869	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_175383)	TTS (NM_175383)	415.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	6.86	4.78	7.42	11.66	4.91	8.47	3.99	2.72	2.95	8.03	7.54	6.27
Merged-chr1-134067313-1	chr1	134067213	134067413	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11842.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.04	2.01	3.99	4.42	7.77	6.27	0.66	4.6	5.9	3.51	2.01	2.19
Merged-chr11-54439234-1	chr11	54439134	54439334	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1055.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	8.08	6.04	5.7	5.23	1.64	6.59	2.99	4.57	12.59	5.52	8.04	3.76
Merged-chr7-118297826-1	chr7	118297726	118297926	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53919.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	2.42	3.77	3.42	4.02	4.5	1.57	1.99	3.64	5.9	13.05	12.56	0.63
Merged-chr12-73318265-1	chr12	73318165	73318365	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 4 of 15)	MER102c|DNA|hAT-Charlie	31417.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.83	0.0	1.14	1.61	0.0	0.0	5.31	4.23	0.39	2.01	0.0	2.82
Merged-chr16-36661826-1	chr16	36661726	36661926	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4251.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.25	3.02	1.14	8.85	9.0	8.15	2.33	3.56	4.92	9.04	7.03	6.27
Merged-chr18-84681501-1	chr18	84681401	84681601	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023149, intron 2 of 11)	intron (NM_023149, intron 2 of 11)	558.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	1.62	4.53	0.0	3.22	7.77	6.9	5.98	1.91	9.83	9.04	8.54	4.39
Merged-chr11-76642425-1	chr11	76642325	76642525	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-30045.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	1.01	4.56	2.41	4.5	4.7	1.0	8.36	4.92	3.51	3.52	5.01
Merged-chr13-59667957-2	chr13	59667862	59668062	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7822.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	1.21	4.28	9.13	4.02	9.82	5.02	1.66	4.54	9.44	8.03	9.55	6.89
Merged-chr16-91731959-1	chr16	91731859	91732059	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	2588.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.04	1.26	0.57	1.61	3.68	1.88	4.98	2.36	2.56	3.01	1.0	5.33
Merged-chr16-30940146-1	chr16	30940046	30940246	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	141286.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	7.67	5.28	8.56	3.22	5.32	6.27	2.66	2.07	7.87	8.54	2.51	3.13
Merged-chr6-4686196-1	chr6	4686096	4686296	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130188, intron 10 of 11)	intron (NM_001130188, intron 10 of 11)	61008.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	8.88	1.76	6.85	8.85	2.45	3.45	2.66	2.69	10.03	2.01	6.03	5.01
Merged-chr1-12990457-1	chr1	12990357	12990557	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172841, exon 1 of 9)	exon (NM_172841, exon 1 of 9)	678.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	2.02	6.54	4.56	0.4	0.82	4.7	7.97	3.73	3.54	4.02	4.02	5.95
Merged-chr2-44978690-1	chr2	44978590	44978790	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44487.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.65	11.82	3.42	3.22	7.36	1.57	7.31	0.48	2.75	3.01	7.54	0.63
Merged-chr6-120666596-1	chr6	120666496	120666696	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001128151, exon 1 of 19)	exon (NM_001128151, exon 1 of 19)	175.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	7.27	6.29	3.99	4.02	4.91	3.14	1.66	2.5	5.11	11.05	5.53	3.45
Merged-chr4-150092551-1	chr4	150092451	150092651	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	5048.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	7.27	1.01	4.56	0.0	2.45	6.59	2.66	3.73	1.38	4.52	4.02	2.51
Merged-chr17-87206570-1	chr17	87206470	87206670	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamRep605|LTR?|LTR?	-11628.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	1.62	2.77	5.7	7.24	4.91	1.88	3.65	3.73	3.93	2.01	0.0	3.13
Merged-chr6-72098846-1	chr6	72098746	72098946	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1238.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	2.28	1.61	1.64	0.0	3.32	2.41	0.39	0.5	1.0	4.39
Merged-chr14-74909239-1	chr14	74909139	74909339	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	38638.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	4.28	1.71	1.21	1.64	2.2	5.31	4.09	2.75	2.01	2.51	1.88
Merged-chr8-25774938-1	chr8	25774838	25775038	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026121, intron 2 of 4)	RSINE1|SINE|B4	10271.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	3.23	0.5	2.28	2.41	2.45	5.33	0.0	4.21	1.18	0.0	0.0	0.0
Merged-chr12-8508472-1	chr12	8508372	8508572	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-8463.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.02	0.5	0.0	0.8	1.64	2.51	0.33	0.06	9.05	8.03	7.54	4.39
Merged-chr2-24048825-1	chr2	24048725	24048925	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_080462, exon 2 of 7)	5' UTR (NM_080462, exon 2 of 7)	554.0	NM_080462	140483.0	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	6.86	0.25	0.0	2.82	8.59	3.45	7.64	4.91	5.51	3.51	5.02	5.95
Merged-chr11-32608441-1	chr11	32608341	32608541	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 12 of 18)	intron (NM_009288, intron 12 of 18)	-34114.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	1.21	1.01	0.0	2.41	10.23	4.39	4.65	4.63	4.72	2.51	2.01	0.94
Merged-chr14-55091881-1	chr14	55091781	55091981	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	167.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	3.23	4.53	10.27	4.02	1.64	6.27	10.96	4.32	6.29	1.51	5.53	6.27
Merged-chr4-119204920-1	chr4	119204820	119205020	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029198)	TTS (NM_029198)	9395.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	1.62	3.02	1.71	3.22	2.86	2.2	2.33	0.42	8.65	2.51	10.55	5.64
Merged-chr10-117709444-1	chr10	117709344	117709544	+	540.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1314.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.81	1.51	0.0	0.0	9.0	5.96	6.64	1.79	2.16	5.52	5.02	1.25
Merged-chr3-129724185-1	chr3	129724085	129724285	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010113, intron 6 of 23)	intron (NM_010113, intron 6 of 23)	901.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	4.44	3.52	4.56	3.22	2.45	0.63	2.99	3.36	5.9	4.02	5.53	5.95
Merged-chr4-134497524-1	chr4	134497424	134497624	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001285849, intron 1 of 2)	intron (NM_001285849, intron 1 of 2)	483.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	2.42	4.02	10.27	6.84	7.36	3.14	5.98	4.57	1.97	8.03	7.03	4.07
Merged-chr19-57138109-1	chr19	57138009	57138209	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001103177, intron 4 of 21)	intron (NM_001103177, intron 4 of 21)	-19085.0	NM_001103178	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	2.42	4.28	0.0	0.8	4.5	1.25	3.65	3.36	2.56	2.01	1.51	2.82
Merged-chr11-80181575-1	chr11	80181475	80181675	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2297.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.67	4.53	1.71	0.8	2.86	2.82	1.33	1.71	9.05	6.03	13.06	13.47
Merged-chr15-94539679-1	chr15	94539579	94539779	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172437, intron 2 of 8)	(GA)n|Simple_repeat|Simple_repeat	3828.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0.0	7.8	1.14	0.8	4.09	4.7	1.0	3.34	2.75	6.03	0.5	7.52
Merged-chr4-132895589-1	chr4	132895489	132895689	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11131.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	4.85	4.02	7.99	4.42	0.82	5.64	1.33	6.06	8.26	1.0	8.04	7.21
Merged-chr11-71224910-1	chr11	71224810	71225010	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040696, intron 2 of 14)	Lx6|LINE|L1	5823.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	8.08	2.77	0.57	8.04	0.0	0.0	0.0	0.0	1.57	3.01	6.03	2.19
Merged-chr6-149323993-1	chr6	149323893	149324093	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	14579.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	4.04	2.01	6.85	6.84	5.73	0.63	4.98	3.79	6.1	4.52	4.52	3.76
Merged-chr6-118302941-1	chr6	118302841	118303041	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110507, intron 4 of 5)	intron (NR_110507, intron 4 of 5)	5778.0	NR_110507	102632423.0	Mm.261755	NR_110507	ENSMUSG00000107933	Gm30498	-	predicted gene, 30498	ncRNA	3.63	1.76	2.28	5.23	7.36	0.63	3.32	8.33	2.75	2.51	4.02	5.64
Merged-chr9-66511119-1	chr9	66511019	66511219	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	3474.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	3.63	1.76	2.28	1.61	4.91	2.51	1.0	3.73	5.9	2.51	5.53	2.82
Merged-chr16-25967516-1	chr16	25967416	25967616	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 13 of 14)	intron (NM_173379, intron 13 of 14)	138268.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.23	4.53	0.57	4.83	8.18	7.53	4.98	4.18	6.69	7.53	9.04	4.7
Merged-chr9-60478826-1	chr9	60478726	60478926	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32209.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.75	0.0	0.0	4.09	3.14	1.99	6.14	5.11	4.02	1.0	5.33
Merged-chr10-117471790-1	chr10	117471690	117471890	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24355.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	1.01	4.56	0.8	2.45	0.63	4.65	3.25	4.13	2.01	3.52	3.13
Merged-chr7-80095826-1	chr7	80095726	80095926	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173011, exon 9 of 11)	exon (NM_173011, exon 9 of 11)	19524.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	8.08	2.77	9.7	6.44	4.5	0.31	2.99	3.31	7.87	11.55	9.04	6.58
Merged-chr9-25571574-1	chr9	25571474	25571674	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89977.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.81	2.26	0.0	0.0	4.91	6.27	2.33	3.93	5.11	6.53	3.52	3.13
Merged-chr8-70301056-1	chr8	70300956	70301156	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024922, exon 2 of 13)	exon (NM_001024922, exon 2 of 13)	1396.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	4.04	4.53	1.71	0.0	4.5	5.96	0.0	3.84	7.87	4.02	2.51	3.13
Merged-chr5-66385804-1	chr5	66385704	66385904	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310626, intron 8 of 15)	MLT1H|LTR|ERVL-MaLR	-48139.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	1.62	3.02	1.71	6.44	1.23	5.02	5.98	2.13	3.93	3.51	4.02	2.82
Merged-chrX-7862587-1	chrX	7862487	7862687	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290537, intron 3 of 9)	intron (NM_001290537, intron 3 of 9)	-15719.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	1.62	4.53	7.99	2.41	4.09	3.76	3.99	3.9	3.54	2.01	1.51	2.51
Merged-chr10-66831489-1	chr10	66831389	66831589	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88895.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.75	6.85	2.41	5.32	4.39	0.0	2.94	2.16	0.0	2.51	3.45
Merged-chr14-30217201-1	chr14	30217101	30217301	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136285.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	3.23	5.03	4.56	5.63	2.45	4.08	1.33	3.08	10.03	2.01	2.51	8.77
Merged-chr2-155787103-1	chr2	155787003	155787203	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010808, intron 1 of 8)	MTD|LTR|ERVL-MaLR	11761.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	3.23	3.77	2.28	4.83	4.09	8.78	7.31	4.88	8.85	5.52	7.54	2.82
Merged-chr4-34883727-1	chr4	34883627	34883827	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	-779.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	2.42	0.25	1.14	2.41	3.68	0.94	5.65	2.92	1.77	1.0	4.02	2.19
Merged-chr1-140180895-1	chr1	140180795	140180995	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	2516.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	1.62	2.52	1.71	1.21	4.09	4.39	3.32	4.15	0.59	2.01	2.01	2.51
Merged-chr2-61734404-1	chr2	61734304	61734504	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021526, intron 3 of 11)	intron (NM_021526, intron 3 of 11)	22710.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	2.42	5.03	1.71	1.61	4.09	10.03	3.65	3.56	8.46	12.05	10.05	1.88
Merged-chr16-21996841-1	chr16	21996741	21996941	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1299.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	4.04	4.02	3.99	5.63	4.09	5.96	3.32	3.22	4.52	6.03	4.02	3.76
Merged-chr7-121734295-1	chr7	121734195	121734395	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011326)	promoter-TSS (NM_011326)	-184.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	4.04	4.02	2.28	1.61	4.91	4.08	3.32	4.79	8.06	5.02	6.53	6.27
Merged-chr2-52425764-1	chr2	52425664	52425864	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-890.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	1.62	2.77	2.28	4.02	0.82	3.14	2.66	2.3	3.93	3.51	5.02	4.07
Merged-chr3-52048297-1	chr3	52048197	52048397	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	56709.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	1.62	1.51	0.57	3.22	2.45	3.76	1.99	4.6	8.26	10.54	6.53	11.28
Merged-chr9-45252201-1	chr9	45252101	45252301	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14506.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	2.83	2.26	0.0	0.4	8.59	3.14	5.31	5.13	6.88	5.02	11.05	2.19
Merged-chr12-11979842-1	chr12	11979742	11979942	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96943.0	NR_003964	627110.0	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	7.36	3.14	0.0	6.5	2.95	3.01	1.51	0.63
Merged-chr11-68853826-1	chr11	68853726	68853926	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-695.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	4.85	1.01	2.28	1.61	4.91	7.53	1.66	3.87	4.72	1.51	0.5	5.33
Merged-chr3-87501254-1	chr3	87501154	87501354	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001113238)	TTS (NM_001113238)	-24324.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.0	1.01	1.14	1.61	0.82	2.51	3.99	3.56	6.49	1.0	2.01	0.94
Merged-chr9-97020378-1	chr9	97020278	97020478	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2023.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	4.85	0.0	0.0	3.22	1.64	1.88	0.0	2.05	7.87	6.53	7.03	5.64
Merged-chr2-57356366-1	chr2	57356266	57356466	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010274, intron 11 of 16)	intron (NM_010274, intron 11 of 16)	117984.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.04	1.26	2.85	2.82	5.73	2.2	0.33	10.35	5.51	4.02	5.02	0.0
Merged-chr4-62396013-1	chr4	62395913	62396113	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139291, intron 3 of 3)	RLTR19-int|LTR|ERVK	12610.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.4	1.51	2.28	2.01	2.86	5.02	0.66	6.36	2.36	2.01	1.51	2.51
Merged-chr10-80401136-1	chr10	80401036	80401236	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1605.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	4.04	2.52	2.28	0.8	0.0	1.25	4.65	4.01	4.33	2.51	3.52	2.51
Merged-chr13-112635379-1	chr13	112635279	112635479	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145885, intron 5 of 21)	intron (NM_001145885, intron 5 of 21)	16931.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	8.48	5.79	22.82	4.02	4.09	8.78	5.31	3.98	12.59	12.05	25.63	4.7
Merged-chr10-78096804-1	chr10	78096704	78096904	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27436.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.63	1.01	6.28	4.02	4.5	10.35	4.32	4.07	6.69	7.53	19.6	4.07
Merged-chr16-4685353-1	chr16	4685253	4685453	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135112, intron 1 of 10)	intron (NM_001135112, intron 1 of 10)	1283.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	7.27	1.01	3.42	5.63	4.5	5.02	2.33	5.27	3.93	6.03	7.03	3.76
Merged-chr7-35030545-1	chr7	35030445	35030645	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26021.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	1.21	0.25	2.28	1.61	4.09	5.64	1.66	3.84	2.95	6.53	6.53	3.45
Merged-chr11-121685982-1	chr11	121685882	121686082	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12831.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	3.23	2.77	1.71	2.41	3.27	7.21	1.0	4.01	2.56	5.52	9.55	5.33
Merged-chr8-83091549-1	chr8	83091449	83091649	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177378)	TTS (NM_177378)	-73803.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.83	3.02	4.56	11.26	2.45	6.27	6.98	4.51	2.56	0.0	1.0	0.63
Merged-chr8-125489625-1	chr8	125489525	125489725	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3208.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.42	5.53	0.57	2.01	4.91	5.02	2.66	2.66	0.2	0.0	5.02	3.76
Merged-chr18-11807633-1	chr18	11807533	11807733	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31641.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	3.23	2.52	7.99	2.82	1.64	4.39	2.99	3.87	7.28	1.0	3.01	0.31
Merged-chr3-123168964-1	chr3	123168864	123169064	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	67185.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	3.23	1.01	1.14	0.8	4.5	4.7	2.33	2.36	6.1	5.52	16.58	7.21
Merged-chr1-87042147-1	chr1	87042047	87042247	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	47781.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.81	2.77	3.42	1.61	1.64	3.14	5.31	2.5	8.65	2.51	6.03	1.88
Merged-chr4-14865206-1	chr4	14865106	14865306	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	987.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	2.42	4.28	3.42	0.0	1.23	4.08	1.99	3.64	2.36	4.02	4.02	3.45
Merged-chr13-102888572-1	chr13	102888472	102888672	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128317.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	2.42	3.52	0.0	2.41	1.64	5.02	2.33	3.81	2.75	4.02	2.51	0.31
Merged-chr11-54988132-1	chr11	54988032	54988232	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 19 of 24)	B3A|SINE|B2	-25192.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.04	5.79	3.99	0.0	5.73	10.98	1.99	2.47	6.88	2.51	8.54	2.82
Merged-chr2-119156553-1	chr2	119156453	119156653	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033136, intron 1 of 12)	CpG	481.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	4.85	8.05	11.41	6.44	4.91	3.14	11.96	6.34	7.28	8.54	7.03	10.34
Merged-chrX-151519582-1	chrX	151519482	151519682	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1090.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	1.62	2.52	5.13	1.61	4.09	4.08	5.65	4.57	6.49	5.52	5.53	1.57
Merged-chr11-67112906-1	chr11	67112806	67113006	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_038055, exon 5 of 5)	non-coding (NR_038055, exon 5 of 5)	7174.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	1.62	3.02	4.56	0.0	1.64	4.39	0.66	4.68	6.49	6.53	2.51	1.88
Merged-chr16-10769045-1	chr16	10768945	10769145	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16491.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	2.42	2.52	4.56	0.8	0.82	4.7	0.33	3.87	7.87	0.5	2.01	6.89
Merged-chr11-118739062-1	chr11	118738962	118739162	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	21979.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	4.44	2.26	2.85	1.61	3.27	1.25	1.33	2.3	6.29	12.05	11.56	3.76
Merged-chr4-101689824-1	chr4	101689724	101689924	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27583.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.4	0.0	0.0	2.41	9.82	5.02	3.99	4.09	5.51	4.02	8.04	2.82
Merged-chr7-127016145-1	chr7	127016045	127016245	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030240, intron 2 of 2)	intron (NM_030240, intron 2 of 2)	1207.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	3.23	1.01	1.14	0.4	5.32	4.39	1.99	5.19	7.08	4.52	3.52	6.27
Merged-chr1-119522837-1	chr1	119522737	119522937	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-3317.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	4.44	2.52	0.0	0.8	2.86	6.9	1.99	4.4	4.72	1.51	13.06	3.45
Merged-chr8-4115477-1	chr8	4115377	4115577	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-9713.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	3.23	1.51	1.14	3.62	2.45	6.59	4.32	3.79	2.16	0.0	0.5	0.63
Merged-chr15-3356547-1	chr15	3356447	3356647	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001048178, intron 3 of 8)	intron (NM_001048178, intron 3 of 8)	-53021.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	1.21	7.04	12.55	0.0	3.27	2.82	3.99	4.37	2.95	2.01	6.03	5.01
Merged-chr5-24578318-1	chr5	24578218	24578418	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-851.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	2.42	4.02	1.14	6.03	2.86	6.9	8.64	2.24	4.72	5.52	8.04	5.33
Merged-chr5-140225308-1	chr5	140225208	140225408	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-50390.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	1.62	0.0	1.14	1.61	2.05	2.51	4.32	5.38	2.36	0.0	2.01	2.19
Merged-chr2-104002934-1	chr2	104002834	104003034	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-24865.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	3.23	3.52	2.85	2.82	4.91	1.88	0.33	5.58	3.74	1.0	9.55	1.25
Merged-chr8-44941707-1	chr8	44941607	44941807	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8501.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.4	0.5	0.0	0.8	1.64	3.45	5.98	3.93	2.75	1.0	9.55	2.82
Merged-chr4-11559450-1	chr4	11559350	11559550	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039556, intron 1 of 14)	intron (NM_001039556, intron 1 of 14)	530.0	NM_001256145	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	2.42	2.26	4.56	0.4	3.68	8.78	6.98	3.42	1.97	2.51	3.01	10.65
Merged-chr11-110464591-1	chr11	110464491	110464691	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-13924.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	1.62	1.01	1.71	0.0	0.82	1.57	1.99	0.08	7.47	10.54	7.03	4.39
Merged-chr5-146905977-1	chr5	146905877	146906077	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42680.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	2.01	1.14	1.61	2.05	6.59	5.65	3.53	3.34	7.03	8.04	6.27
Merged-chr19-4190984-1	chr19	4190884	4191084	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_178650)	promoter-TSS (NM_178650)	63.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	5.25	5.28	7.99	0.0	3.68	5.33	2.33	1.96	7.28	5.52	5.53	11.9
Merged-chr4-43322714-1	chr4	43322614	43322814	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 11 of 28)	intron (NM_177195, intron 11 of 28)	55555.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	1.21	4.28	5.7	2.41	3.27	5.33	4.32	4.23	0.59	0.5	1.0	0.63
Merged-chr14-70647226-1	chr14	70647126	70647326	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_181345)	TTS (NM_181345)	-4958.0	NM_008004	14171.0	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	13.33	5.53	0.57	0.0	4.91	6.27	2.33	4.91	3.74	8.03	7.03	3.13
Merged-chr17-31576841-1	chr17	31576741	31576941	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016670, intron 1 of 10)	ORR1F-int|LTR|ERVL-MaLR	12068.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	1.21	2.77	4.56	11.66	8.59	2.2	4.98	5.1	5.11	3.01	2.51	3.76
Merged-chr4-136449168-1	chr4	136449068	136449268	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20593.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.81	1.01	0.57	0.0	3.27	2.2	4.32	7.35	2.56	0.5	0.0	0.63
Merged-chr8-41235786-1	chr8	41235686	41235886	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-3973.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.44	4.02	0.0	1.21	3.27	0.94	5.31	3.87	4.33	1.51	3.52	4.07
Merged-chr14-21993876-1	chr14	21993776	21993976	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4275.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.23	6.29	0.0	10.46	2.86	0.94	8.97	4.12	4.33	5.02	7.03	0.94
Merged-chr10-111507858-1	chr10	111507758	111507958	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009344, intron 1 of 1)	intron (NM_009344, intron 1 of 1)	1572.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	1.62	2.77	0.57	0.0	2.05	6.27	4.65	3.76	5.31	5.52	5.53	3.13
Merged-chr6-131003518-1	chr6	131003418	131003618	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	243844.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	1.62	4.53	3.42	2.01	2.05	9.72	3.32	5.58	5.9	1.51	4.52	6.89
Merged-chr9-44483961-1	chr9	44483861	44484061	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	1136.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	9.29	5.53	2.28	2.41	4.5	3.14	4.98	1.09	5.11	2.51	13.57	7.21
Merged-chr6-122821961-1	chr6	122821861	122822061	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1777.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	4.04	6.29	8.56	4.83	3.27	1.57	2.33	3.93	7.08	4.52	3.01	5.33
Merged-chr14-55541005-1	chr14	55540905	55541105	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028994, intron 1 of 9)	intron (NM_028994, intron 1 of 9)	739.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	1.62	1.01	6.85	7.24	4.5	5.33	1.99	3.76	5.31	4.52	3.52	3.76
Merged-chr2-27657036-1	chr2	27656936	27657136	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20165.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.81	1.01	0.0	7.24	2.86	3.14	5.31	2.92	10.42	3.01	7.54	2.82
Merged-chr15-101309063-1	chr15	101308963	101309163	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15851.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	5.65	4.78	3.42	0.0	2.86	4.39	4.98	5.69	8.85	4.52	3.52	1.57
Merged-chr16-10990598-1	chr16	10990498	10990698	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	2523.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	6.46	3.02	1.14	8.85	0.82	0.0	1.33	1.77	3.34	2.01	1.0	0.94